LOCUS       DASPKR010000001         3042 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_129493, whole genome shotgun sequence.
ACCESSION   DASPKR010000001 DASPKR010000000
VERSION     DASPKR010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3042)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129493"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            186..>3042
                     /gene="uvrA"
                     /locus_tag="VD968_00005"
     CDS             186..>3042
                     /gene="uvrA"
                     /locus_tag="VD968_00005"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: protein motif:HMM:NF001503.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HYE12808.1"
                     /translation="MKDAIIVRGARQHNLKGFDVEIPRRSFTVITGPSGSGKSSLAFD
                     TIYAEGQRRYVESLSAYARQFLDQLERPDVDSVDGLSPAISIEQKTVSRSPRSTVGTV
                     TEVYDYLRLLFSSVGQPHCHICGAPITRQSVEQIVQNVLALPEGERVMVLAPVVRGRK
                     GEFKKELEKLAKDGFLRARVDGELVSLDEEIRLDKRRNHSIEAVVDRLLIKPGIGDRL
                     AESVRTALKLTSGAVLISVVDGEEKLYSERMACVNCGINVPPLEPRSFSFNSVYGACK
                     RCHGLGTVLEVDPAKVVADATERADKLFLGLHAADKQSAAFLKSALLAVIEHMGADPQ
                     STFAQLPAQVRDAFFHGVEGQITFRQGLYKYQGEWKGAVRHLSERMHSAPNERVREAL
                     EEMVSPVRCPDCEGRRLQPESLSVRIGGHGIADYTGLPIEEAVEAFDRLKLSEREEQI
                     AGLVLKEIRSRLRFLNTVGLGYLTLDRPSATLSGGEGQRIRLATQIGSQLRGVLYVLD
                     EPSIGLHPRDNQRLLETLAALRDLGNTVLVVEHDEETIRRADYVVDLGPAAGAHGGEI
                     VAAGTPDDVACNPESVTGLYICGKRSIEVPASRRKANGAAVTVRGARANNLKSIDAQF
                     PLGLLTVVTGVSGSGKSTLVDDILYRALARHVYGSLEEPGEFDAIDGLESVDKVIEID
                     QSPIGRTPRSNPATYTGLFTPIRELYAMLPESRERGYKPGRFSFNVRGGRCEACEGDG
                     MKRIEMNFLPDVYVLCDVCRGARYNRETLSVRYKGKSIAELLGTTVEEALPILENIPQ
                     IKQKLQTLLDVGLGYIKLGQAATTLSGGEAQRIKLARELSKRATGKTIYILDEPTTGL
                     HFADVHKLLDVLQRLVSLGNTVIVIEHNLDVIKSADHIIDLGPEGGASGGRVVACGTP
                     EEVARVRKSHTGQALRPLLNGRAANGNGHRPADGDGAD"
BASE COUNT          520 a         1110 c          961 g          451 t
ORIGIN      
        1 cctcggccgc gtcgccctcc gccgcacgcg ccggcgccgc cggcgccact ccggaccgcc
       61 ctggcacccc tagtgcacgg ggcggtctgg cgttcggccc gtctcgcggg cctcgggacc
      121 cgggtcccgc cggaacggcc cctgccccgg tgtttgttcg ggcccccgcg cttagattcc
      181 gccctgtgaa agacgccatc atcgtccggg gcgcccggca gcacaacctg aagggcttcg
      241 acgtcgagat cccccgtcgc agcttcacgg tgatcaccgg cccctccggc tccggcaagt
      301 cctcgctggc cttcgatacg atctacgccg aggggcagcg ccgctacgtc gagtcgctct
      361 cggcctacgc ccgccagttc ctcgaccagc ttgagcgccc cgacgttgac tccgtggacg
      421 gcctctcgcc cgcgatctcc atcgagcaga agaccgtctc gcgcagcccg cgctcgaccg
      481 tcggcaccgt cacggaggtt tacgactacc tgcgcctgct cttctcctcc gtcggccagc
      541 cgcactgcca catctgcggc gcgccgatta cgcgccagtc cgtcgagcag atcgtccaga
      601 acgtgctcgc gctccccgag ggcgagcgcg tcatggtgct cgcgcccgtt gtgcgcggcc
      661 gaaagggcga gttcaagaag gagctcgaga agctcgcgaa ggacggcttc ctgcgcgccc
      721 gtgttgacgg cgagctggtc tcgctcgacg aggagatacg cctcgacaag cggcgcaacc
      781 actctatcga ggccgtcgtt gaccgcctgc tcatcaagcc cggcataggc gaccgtctcg
      841 ccgagtcggt gcgcacggcc ctgaaactga cgagcggcgc cgtgctcatc tcggtcgttg
      901 acggcgagga gaagctctac tcggagcgca tggcctgcgt caactgcggg ataaacgtgc
      961 cgccgctgga gccgcgctca ttctccttca actcggtgta cggcgcgtgc aaacgctgcc
     1021 acggcctcgg cactgtgctc gaagttgacc cggctaaggt agtcgccgac gcgaccgagc
     1081 gggccgacaa gctcttcctc gggctccacg ccgccgacaa gcagagcgcg gccttcctga
     1141 agagcgcgct cctcgccgtc atcgagcaca tgggcgcaga cccgcagagc accttcgcgc
     1201 aactccccgc gcaggtgcgc gacgccttct tccacggcgt cgaggggcag ataactttcc
     1261 gtcagggcct ctacaaatat cagggcgagt ggaagggcgc cgtgcgacac ctctccgagc
     1321 gcatgcacag cgcgccgaac gagcgcgtgc gcgaggccct ggaagagatg gtctcgcccg
     1381 tgcgctgccc cgactgcgaa ggtcgccgcc tacagcccga gtcgctctcc gtgcgcatag
     1441 gcgggcacgg catcgccgac tacacggggc ttcccatcga ggaggccgtc gaggcgttcg
     1501 acagactaaa gctgagcgag cgagaggagc agatagccgg cctcgtcctc aaagagataa
     1561 ggtcgcgcct gcggttcctg aacaccgtcg ggctcgggta tctgacgctc gaccgcccgt
     1621 cggcgacgct ctccggcggc gagggccagc gcatacggct cgccacgcag ataggctcgc
     1681 agctccgcgg cgtcctatac gtcctcgacg agccctcgat cgggctgcac ccgcgcgaca
     1741 accagaggct gctggaaacg ctcgccgccc tgcgcgacct cggcaacacc gtgctcgtcg
     1801 tcgagcacga cgaggagact atacgccgcg ccgactacgt cgttgacctc ggccccgcgg
     1861 ccggcgcgca cggcggcgag attgtcgccg caggcacgcc cgacgacgtg gcctgcaatc
     1921 ccgagtccgt cacgggcctg tacatctgcg gcaagcgctc gatagaagtc cccgcctccc
     1981 gccgcaaggc caacggcgcc gccgtcacag tccgcggcgc gcgcgccaac aacctcaaga
     2041 gcattgacgc gcagttcccg ctcggcctgc tcacagtcgt caccggcgtt tcgggctcgg
     2101 gcaagtcaac gctcgttgac gacatactct accgcgcgct cgcgcgccac gtttacggct
     2161 cgctcgaaga gccgggcgag ttcgacgcaa tagacggcct cgagagcgtt gacaaggtca
     2221 tagagattga ccagtcgccc atcggccgca ctccgcgctc gaacccggcg acctacactg
     2281 gcctcttcac tccgatacgc gagctctacg cgatgctgcc ggagtcgcgc gagcgcggct
     2341 acaagccggg ccgcttctcc ttcaacgtca ggggcgggcg ctgcgaggct tgcgagggcg
     2401 acggcatgaa gcgcatcgag atgaacttcc tgccagacgt gtacgtcctc tgcgacgtgt
     2461 gccgcggcgc gcgctacaac cgcgagacgc tctcggtcag gtacaagggc aagtccatcg
     2521 ccgagctcct gggcacgacg gtcgaggagg cgctgccgat actcgagaac atcccgcaga
     2581 taaagcagaa gcttcagacg ctcctcgacg tagggctcgg ctacatcaag ctcggccaag
     2641 cggccaccac gctctcgggc ggcgaggcgc agcgcatcaa gctcgctcgc gagttgtcga
     2701 aacgcgccac gggcaaaacc atctacatac tcgacgagcc cacgacgggc ctgcacttcg
     2761 cggacgttca caagctcctg gacgttttgc agcggctggt ctcactgggc aacaccgtca
     2821 tcgtcatcga gcacaacctc gacgtgataa agtcggccga ccacatcatt gacctcggcc
     2881 ccgagggcgg cgcgagcggc ggccgcgtag tcgcctgcgg cacgcccgag gaggtcgcaa
     2941 gagtcaggaa gtcgcacaca ggccaggcgc tccgcccgct cctcaacggc cgcgccgcga
     3001 acggcaacgg ccacaggccg gcggacggcg acggcgccga ca
//
LOCUS       DASPKR010000002         2266 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1423629, whole genome shotgun sequence.
ACCESSION   DASPKR010000002 DASPKR010000000
VERSION     DASPKR010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2266)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1423629"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VD968_00010"
     CDS             <1..186
                     /locus_tag="VD968_00010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12809.1"
                     /translation="RSGDAPLGTEPLSEFRLGLQVKAAGLRFDAAGIKGLTDFSPRSG
                     VTFGVTYDTPAVFTPAK"
     gene            271..939
                     /locus_tag="VD968_00015"
     CDS             271..939
                     /locus_tag="VD968_00015"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HYE12810.1"
                     /translation="MFDWLAEVARWLHDFIREVPIYVAAPAMVLIGALDSSLLSLPEI
                     NDYLVVARCYSDPKAVFYFPLFAAAGSVIGCLLLYSIMRRGGQAVMRRRFSAENIARV
                     ERAYARFGFLALAVPALLPPPMPFKIFVATAGALEYPRWRFMVTIMIARSLRYYVEGT
                     LAVFYGEQVIEFMRHNGLAILSVAAGLVIVGIAVYVLVKHIKAPRRTAVEEAERAERG
                     GERS"
     gene            936..1562
                     /locus_tag="VD968_00020"
     CDS             936..1562
                     /locus_tag="VD968_00020"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HYE12811.1"
                     /translation="MKWLLRKITNGLTSVSDFLVTFGAAGLFAVALLDSALVPLPGGP
                     DAVMLLLSTRSPGWMPVYALAATAGSVIGCVILYHISRRAGRRALEKFPLEKQARVKA
                     LVDRYDVLSVLVASVLPPPFPFKLFVITAGVFRLSVWRFAAAVAAGRAFRFFLEGFLA
                     VRYGERAKEVLAENYPAVGVGLAAVIVVVFVLRGLLKRRRGAEAAAGQ"
     gene            complement(1556..>2266)
                     /locus_tag="VD968_00025"
     CDS             complement(1556..>2266)
                     /locus_tag="VD968_00025"
                     /inference="COORDINATES: protein motif:HMM:TIGR00573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease domain-containing protein"
                     /protein_id="HYE12812.1"
                     /translation="ASLVSEIVRDDWRLRVVEETDEVELLCGDDGALPLAGTDFVVFD
                     LETTGPKTPPCRIMELGACRVSRGRIVAEFKTLVNPQMPIPPFISGLTGIRDEMVAAA
                     PTFGEVAADWLDFVDMAVLVAHNALFDVRFINHELSLVFPGRRMHNPHLCTVSLARRV
                     LPDLKSFRLKALADHFSVPHKARHRAGDDARATAEVFLFLLELLDGNGVKDLDGARRF
                     QMPQTRADENGKHMSAPH"
BASE COUNT          332 a          731 c          790 g          413 t
ORIGIN      
        1 cgctcgggcg acgcgccgct cggcaccgag ccgctctccg agttccgcct cggccttcag
       61 gtcaaggccg cgggccttcg cttcgacgcc gccggcatca agggcctcac ggacttcagc
      121 ccgcgctcgg gcgtcacctt cggcgtcacc tacgacaccc ccgcggtctt cacgccagca
      181 aaataaaagc ggagccgggt gacgtgtgag gggcgacggg ttacaatgac gggcatagct
      241 cgtcatatat aacttgcgcc cgcaatcttt atgttcgatt ggctggccga agtcgcccgt
      301 tggcttcacg acttcataag ggaagttccc atctacgtcg ccgcgcccgc gatggtcttg
      361 atcggggcgc tcgactcttc gctcctgagc ctgcccgaga ttaacgacta cctcgtcgtc
      421 gcgcgctgct acagtgaccc gaaggccgtc ttctacttcc cgctcttcgc cgccgcgggc
      481 tccgtaatcg gctgcctgct gctctactca ataatgaggc gcggtggaca ggccgtgatg
      541 cggcggcgct tcagcgccga gaacatcgcg cgcgtcgagc gcgcgtacgc tcgtttcggc
      601 ttccttgcgc tcgcggtgcc ggcgctcctg ccgccgccga tgccgttcaa gattttcgtg
      661 gcgactgctg gcgcgctcga atacccgcgc tggcgcttca tggtgacgat aatgatcgcg
      721 cggagccttc gctactacgt cgaaggcacg ctcgcggtct tctacggcga gcaggtcatc
      781 gagttcatgc gccacaacgg gctcgcaatc ctgagcgtcg cggccgggct cgtaatcgtc
      841 ggcatagcgg tttacgtcct cgtcaagcac atcaaggcgc cgaggcgcac ggccgtcgag
      901 gaggccgaaa gggccgaaag gggcggcgag cgaagttgaa gtggctgctg cggaaaatca
      961 ctaacggcct gacgagcgtc tccgactttc tggtgacgtt cggcgcggcg ggcctcttcg
     1021 ccgtggcgct tctggactcg gcgctcgtgc cgctgccggg cggccccgac gcggtgatgc
     1081 tcttgctctc gacgcgctcg cccggctgga tgccggttta cgcgctcgcg gcgacggcag
     1141 gctcagtcat cggctgtgtc atcctctacc acatctcgcg ccgcgcgggc cgccgcgcgc
     1201 tcgagaaatt cccgctggag aagcaggcgc gcgtcaaagc tctggttgac aggtacgacg
     1261 tgctatcggt gctcgtcgcg tcggtgctgc ccccgccttt cccgttcaag ctcttcgtca
     1321 tcacggcggg cgtgttccgc ctgagcgtct ggcgcttcgc cgctgcggtg gcggcgggcc
     1381 gcgcgttccg cttcttccta gaaggcttcc tcgccgtgcg ctacggcgag cgggcgaagg
     1441 aggttcttgc ggagaactac ccggccgtgg gcgtcgggct cgccgccgtc atagttgtcg
     1501 tgttcgtgct gcgagggtta ctgaagcgca ggaggggcgc ggaggcggcc gccggtcagt
     1561 gaggcgcgct catgtgcttg ccgttctcgt ccgccctcgt ctgcggcatc tggaagcggc
     1621 gggcgccgtc gaggtctttg acgccgttgc cgtcgagcag ctccaaaagg aagaggaaga
     1681 cttcggccgt ggcgcgcgcg tcgtcgccgg cgcggtggcg cgccttgtgc gggacggaga
     1741 agtggtcggc gagggccttg aggcggaagc tcttcaggtc gggcagcacg cggcgcgcca
     1801 gtgagacggt gcagaggtgc gggttgtgca tgcggcggcc ggggaagacg agcgaaagct
     1861 cgtggttgat gaagcgcacg tcgaagaggg cgttgtgcgc gacgaggacg gccatgtcaa
     1921 cgaagtcgag ccagtcggcg gcgacctcgc cgaaggtcgg ggcggcggcc accatctcgt
     1981 cgcgtatgcc ggtgaggccc gagatgaagg gcggtatcgg catctgaggg ttgacgagcg
     2041 tcttgaactc ggcgacgatt cggccgcggc tcacgcggca ggcgcccaac tccatgatgc
     2101 ggcacggcgg ggtcttcggc ccggtcgtct ctaggtcgaa gacgacgaag tcagtgccgg
     2161 cgagcggcag cgcgccgtcg tcgccgcaca gaagctcgac ctcgtcagtc tcctcgacga
     2221 cgcgcaggcg ccagtcgtcc ctgacgatct cggagacgag cgaggc
//
LOCUS       DASPKR010000003         5218 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1682633, whole genome shotgun sequence.
ACCESSION   DASPKR010000003 DASPKR010000000
VERSION     DASPKR010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5218)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5218
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1682633"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..205
                     /locus_tag="VD968_00030"
     CDS             <1..205
                     /locus_tag="VD968_00030"
                     /inference="COORDINATES: protein motif:HMM:NF012881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12813.1"
                     /translation="SDEHFEVAIIPKTWAATNLSHLRPGDAVNLEADIIAKYVERIMT
                     AGRGQGADAPPLTLEKLSELGYK"
     gene            266..1333
                     /locus_tag="VD968_00035"
     CDS             266..1333
                     /locus_tag="VD968_00035"
                     /inference="COORDINATES: protein motif:HMM:NF021466.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008195 - phosphatidate phosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase domain-containing protein"
                     /protein_id="HYE12814.1"
                     /translation="MPTLFEKKLTFYPTYGYRPQDGSGVWRIPARAWVRNERPMPPDS
                     VIRLCVDEEGELSEKLFLRLKECVRDFVARDNEGEEVRFTFDGDPAREKFRLRGETDG
                     NGIIIEEFDLPDEAAGRIIAAQPDAGRGGWLKLTAETSGLSGKATSSSAVRLTEPHGL
                     SVVSDIDDTVKVTEVPAGKRAVLRRTFLMDYEEAEGMRERYQKILERNPDFDNVAFHY
                     VSGSPWQLFRLLHEFLVGTAGFPAGTFHMKGVNVDLEDFVSSFRDIGKLLAGSEDTER
                     QKREQISEVMRRFPGRKFILIGDSGERDPEVFRWLKGQFGDQVAKIYIRDVTELGEGA
                     ERLGGMLRLDTRGVCLQEGGD"
     gene            1451..2638
                     /gene="ribB"
                     /locus_tag="VD968_00040"
     CDS             1451..2638
                     /gene="ribB"
                     /locus_tag="VD968_00040"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HYE12815.1"
                     /translation="MPFAPIEEAAAELREGRMIIIVDDEDRENEGDLACAAECVTPEI
                     INFMATHARGLICMPLTEERCDELHLTMQVADNTSFLGTAFTVSIEARKGVTTGISAA
                     DRATTILTAVDPKTRPQDLARPGHVFPLRARKGGVLVRPGQTEAVVDMARIAGLYPAG
                     VICEILNPDGTMARLPQLEEFAACHDLKMITVADLVRYRMQKEVLVRRAVETDLPTVY
                     GRFRAVAFENVVNDEVHLAMVMGDVRTDEPVLVRVHTENVTCDMFGSLIDDTGFQLHA
                     ALEKIAAEGRGLVLYLRQRHNNLDLVHQLGTYALMQERGLTKEEASVETGYGKDRDYG
                     VGAQILHELGVRRILLLTNHPPKVSALEGFELEIVGNVPLGTPARAQSDGAREAKPLA
                     PNS"
     gene            2746..>5218
                     /locus_tag="VD968_00045"
     CDS             2746..>5218
                     /locus_tag="VD968_00045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12816.1"
                     /translation="MPADEQDESRAPESPDEGAPLKFEQPPGGGPSPLAPLTPKGRRV
                     GWRRVVNRRNAIWAGVVAAVAVVAIVLIALILYRTGQVDRIIARQIVDTLAKYNIRAE
                     VGSFETKFGPRTVELRDLRLYNSVTGAPIGNIERILAKVRIEDMWALNLRRNVNLEEL
                     TVDRPEIWVTFDEQGRSNFSELKIPPPDPNSRILFAYSTAHARVNGAVVHYDDDRYDI
                     SGEARNVRAEARPEDPSAPEESRMNLIDLWLSDSSFVYNGRPVENISIEVHARANQVR
                     ADIRELVLRSPVTEARLSGTLDDWRDLRYRMQVNATVDLTQTSEVLRAGTTMRGVGRL
                     EGTVTGEGDKYRVEGQVTSDALAADGVRLKALSVNATGSGQGSSYEAQGRAVAELLTA
                     GDFQINMVQVAGGVTGTGTDFRWVGDLRAAAARSGASSIAALVLQDAAAELRGGRLSG
                     AAKSLSAGSATFEGARVAGLQASGVEFAREEDGRARVTASGARAGTIVSGGTTVSGAE
                     ASQVEATINADESASVTVGRVTVGGVSAAGAKTGSINIAGVRLSVSPGGRVEGSSGDV
                     AVGTVAFTAGGGGHAEQVRLARPRFTLEPGGRYRASADLSLGGGVVGKMPLGPARAAV
                     VATGEQIQLNDFVAALGRGSARGNAVIATSPRASSSVATAFEGVDVGLLLAATTGNAV
                     PLTGAATGTADLRFPGTNFKAASGRLDARFEGATGRDESARTPLTGELALTADRGLFQ
                     IERANLRTGATELNARGRFSFEGGSDLAVNLNSADAAELQSVVMATGLLPDLEERVKE
                     FGVQLAGNLSFNGTLSGDLDDPLVNG"
BASE COUNT          896 a         1822 c         1745 g          755 t
ORIGIN      
        1 ctcggacgag cacttcgagg tcgccatcat ccctaagacc tgggccgcga ccaacctctc
       61 ccacctgcgg cccggcgacg ccgtcaacct cgaggcagac atcatcgcca agtacgtcga
      121 gcgcataatg acggccggtc gggggcaggg tgccgacgcg ccgccgctca ccctggaaaa
      181 gttgtccgaa ctgggttaca aatagcccgc gcctcgcccc gctctcgact ctcacgccgg
      241 cgccgcccgg gaaggagccc gagtcatgcc cactctcttc gagaaaaaac tgaccttcta
      301 cccgacctac ggctaccgcc cgcaggacgg ctcgggcgtc tggcgcatac ccgcgcgcgc
      361 gtgggttcgc aacgagcgcc cgatgccgcc cgactccgtc atacgcctct gcgtggacga
      421 ggagggcgag ctaagcgaga agctgttcct ccgcctaaag gaatgcgtcc gcgatttcgt
      481 cgcgcgcgac aacgagggcg aggaggttcg cttcaccttc gacggcgacc ccgccagaga
      541 gaaattccgc ctgcgcggcg agaccgacgg caacggcatc atcatcgagg agttcgacct
      601 gccggacgag gccgcgggcc gcatcatcgc cgctcagccc gacgcgggcc ggggcggctg
      661 gctcaagctc acggccgaga cgagcgggct gagcggcaag gccacctctt cgagcgccgt
      721 caggctcacc gagccgcacg gcctctcggt cgtctccgac atagacgaca ccgtcaaggt
      781 gacggaagtc ccggcgggca agagggcggt gctgcgccgc acgttcctga tggattacga
      841 ggaggccgag gggatgcgcg agaggtatca gaagatcctc gagcgcaacc ccgacttcga
      901 caacgtcgcc ttccactacg tctcgggcag cccgtggcag ctcttccgcc tcctgcacga
      961 attcctggtc ggcacggccg gcttccccgc cgggactttc cacatgaagg gcgtcaacgt
     1021 tgacctcgag gatttcgtca gctcgttccg ggacataggg aagctactcg ccggctcgga
     1081 ggacacggag cggcagaagc gcgagcagat ttcggaggtc atgcgccgct tccccggccg
     1141 caagttcata ctgatcggcg actcgggcga gcgcgacccc gaggtcttcc ggtggctcaa
     1201 ggggcagttc ggcgaccagg tggctaaaat ctacatacgc gacgtgacgg agctgggcga
     1261 gggggccgag cgcctgggcg gcatgctgag gctcgacacg cgcggcgtct gccttcagga
     1321 ggggggcgac tgatagaccg aaattcgtcc cctgccgggc taaagcggtc gcaaaaacgg
     1381 agagtttcgg ttaacatacc cctgctgttg gcatctctcc tgaacatctg ttctgagccg
     1441 gtttacgccc atgccttttg ctcccatcga agaggccgcc gctgagttgc gcgaaggccg
     1501 catgataatc atagtggacg acgaggatcg cgagaacgag ggcgacctcg cctgcgccgc
     1561 cgagtgcgtc acgcccgaga taatcaactt catggcgact cacgcgcgcg gcctcatctg
     1621 catgcccctg acggaagagc gctgcgacga gctgcacctc accatgcagg tcgccgacaa
     1681 cacctcgttc ctggggacgg ccttcaccgt ctcaatcgag gcccggaagg gtgtgaccac
     1741 cggcatttct gcggccgacc gcgccacaac gatactcacg gccgttgacc cgaagacgcg
     1801 cccgcaagac ctcgcccggc cgggccacgt cttcccgctg cgcgcgcgca agggcggcgt
     1861 gctcgtccgg cccgggcaga ccgaggcggt cgttgacatg gcgcgcatag cgggcctcta
     1921 cccggccggc gtcatctgcg aaattctcaa ccccgacggc acgatggcgc ggctgccgca
     1981 gctcgaagag ttcgcggcat gccacgacct caagatgatc acggtcgccg acctcgtccg
     2041 ctaccgcatg cagaaggagg ttttggtgcg gcgcgccgta gagacagacc tccccaccgt
     2101 gtacggccgc ttccgcgccg tggccttcga gaacgtcgtg aacgacgagg ttcacctggc
     2161 gatggtcatg ggcgacgtgc gcaccgacga gcccgtgctc gttcgcgtgc ataccgagaa
     2221 cgtcacgtgt gatatgttcg gctcgctcat tgacgacacg gggttccagc tccacgccgc
     2281 cctcgaaaag attgcggccg aggggcgcgg cctcgttctc tacctccggc agcgacacaa
     2341 caacctcgac ctcgtgcacc agctcggcac ctacgccctg atgcaggagc ggggccttac
     2401 gaaggaggag gcgagcgtcg agaccggcta cggaaaggat agagactacg gcgtgggcgc
     2461 gcagatactc cacgagctgg gcgtgcggcg catactgctg ctcaccaacc acccgccgaa
     2521 ggtgtcggcg ctcgaaggct tcgagctgga gatagtcggc aacgtgccgc tcggcacgcc
     2581 cgcgcgcgcg caaagcgacg gcgccagaga ggcgaagccg ctcgcgccga actcctgagc
     2641 ggcggcggcc gggaaccccg cccggccgag ccgccccggc ctctcacttt attttcataa
     2701 cccccgccgt cgaactcccc ctcgggcggc cgatgtgaaa gcactatgcc cgctgacgag
     2761 caagacgaaa gccgcgcccc cgagagcccc gacgaaggcg ccccgctcaa attcgagcaa
     2821 ccgcccggcg gaggcccctc gccgctcgcg cccctcacgc cgaaggggag gcgcgtgggc
     2881 tggcgccgcg tcgtcaaccg ccgcaacgcg atctgggccg gcgtcgtcgc ggccgtcgcg
     2941 gtcgtcgcaa tcgtgctcat cgcgctcatc ctctaccgca cggggcaggt tgaccgcatc
     3001 atcgcccgcc agattgttga tacgctcgcc aagtacaaca tacgcgccga ggtcggctcg
     3061 ttcgagacga agttcggccc gcgcaccgtc gagcttcgag acctgcggct atacaactcc
     3121 gtcaccggcg cgcccatcgg caacatagag cgcatactcg cgaaggttcg catcgaggac
     3181 atgtgggcgc tcaacctccg gcgtaacgtc aacctcgaag agctgactgt tgaccgcccg
     3241 gaaatctggg tgacgttcga cgaacagggc cgctctaact tctccgagct taaaatcccg
     3301 ccccccgacc ccaacagccg aatcctcttc gcctactcga ccgcgcacgc ccgcgtcaac
     3361 ggcgccgtcg tccactacga cgacgaccgc tacgacatct cgggcgaggc aaggaacgtc
     3421 cgcgccgaag cccgccccga agacccgagc gcgcccgaag agagccgcat gaatttgata
     3481 gacctctggc tctcagactc ctccttcgtc tataacggcc gccccgtcga gaacatcagc
     3541 atcgaagtgc acgcgcgcgc caaccaggtt cgcgcggaca ttcgcgagct cgtcctgcgc
     3601 tcgcccgtga cggaggcgcg cctctccgga acgctcgacg actggcgcga cctccgctac
     3661 aggatgcaag tcaacgcgac ggttgacctc actcagacct ccgaggtgct gcgcgccggg
     3721 acgacgatgc gcggcgtcgg ccggctggaa ggcaccgtga cgggcgaggg cgacaagtac
     3781 cgcgtcgaag gccaagtcac ttccgacgcg ctcgcagccg acggcgtgag gctgaaggcg
     3841 ttgagcgtga acgcgacggg ctcggggcag ggctcgtctt acgaggcaca gggccgggcg
     3901 gtcgccgagc ttctgaccgc gggcgacttc cagataaaca tggtgcaggt cgcgggcggc
     3961 gtgacgggga cggggactga cttccgctgg gtcggggatt tgcgcgccgc ggccgcgcgc
     4021 agcggcgcgt cgagcatcgc cgccctcgtc cttcaggacg cggcggccga gctgcgcggc
     4081 ggccgcctgt ccggcgcggc gaagagcttg agcgccggct ctgccacgtt cgagggggcg
     4141 cgcgtcgcgg gcttgcaggc ttcgggcgtc gagttcgcgc gcgaggagga cgggcgcgcg
     4201 cgcgtaacgg cctcgggcgc gcgcgcaggc accatagtct ctggcgggac gaccgtgagc
     4261 ggcgccgagg cttcgcaggt cgaggcgacg attaacgccg acgaatccgc gagcgtgacg
     4321 gtcgggcgcg tgaccgtggg cggcgtgagc gcggcgggcg caaagacggg cagcataaac
     4381 atcgccggcg tgcggctctc ggtctcgccg ggcgggcgcg tcgagggaag ctcgggcgac
     4441 gtggccgtcg gcaccgtggc tttcacggca ggcggcggcg gccacgcgga gcaggtgcgt
     4501 ctggcacgcc cgcgcttcac gctcgagccg ggcgggcgct accgcgctag cgccgacttg
     4561 agtttgggcg ggggcgtcgt cggcaagatg ccgctcggcc cggcgcgcgc ggcggtcgtg
     4621 gcgacgggcg agcagataca gctcaacgac ttcgtcgcag ccctcgggcg ggggagcgcg
     4681 cgcggcaacg ccgtcatagc gacttcgccg cgcgcctctt cgagcgtcgc caccgcgttc
     4741 gagggcgtgg acgtcggcct cctgctcgcg gcgaccacgg gcaacgccgt gccgctcacg
     4801 ggcgcggcca cgggcacggc cgacctgcgc ttccccggca cgaacttcaa ggcggcatcg
     4861 ggccggctcg acgcgcgctt cgagggcgcg accggccgcg acgaatccgc ccgcacgccg
     4921 ctcacgggcg agctggcgct tacggccgac cgcggcctct tccagataga gcgcgccaac
     4981 ctccgcaccg gcgcgaccga gcttaacgcc cgaggccgct tctccttcga gggcgggtca
     5041 gaccttgccg tcaacctgaa ctcggcggac gccgccgagc ttcagtcggt cgtgatggcg
     5101 acggggttgc ttcccgactt ggaagagcgc gtaaaagagt tcggcgtgca gctcgccggc
     5161 aacctcagct tcaacggcac gctctcgggc gacctggacg acccgctcgt caacggcc
//
LOCUS       DASPKR010000004         2464 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1294347, whole genome shotgun sequence.
ACCESSION   DASPKR010000004 DASPKR010000000
VERSION     DASPKR010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2464)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2464
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1294347"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1176)
                     /locus_tag="VD968_00050"
     CDS             complement(<1..1176)
                     /locus_tag="VD968_00050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12817.1"
                     /translation="MKAQPSPAEVAPEDDRGVLFKSVYRDEWEEINERRHQQLYLSPN
                     KARGREDAPPMNLVGLALSGGGIRSATFCLGLLQGLHKLRLLRIFDYLSTVSGGGYVG
                     GWWSAWLSRDQISSRAHAPSQGDDDVKVLPEDIKSPVSLMIKLRGSGDDVSIALRERF
                     SPEMKLLLATFNESDPTQRQLDEARAALAAELNRAIDDRLFSTLRYGAPRDGDTQSPL
                     HTPEANRLILEETYPCELKDIFPPREQIEPERFAAGAPEEGGGRPAGDGGGSESSMNA
                     WRDPIHHLRLFANYLTPRRGLLSYDTWRAVSVITRNLTLTWLVLLPVLTAVMLFGQLF
                     FLVAPSTRDDFLPKPPQAQAHRNTGEVFANRLKLIAMPVAGIAGLIGVLWIAWLLCLN
                     "
     gene            complement(1510..2358)
                     /locus_tag="VD968_00055"
     CDS             complement(1510..2358)
                     /locus_tag="VD968_00055"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HYE12818.1"
                     /translation="MKQYHDLLRTDLARGVEHEDRTGVGTVSHFGYQTAYDLREGFPI
                     VTTKRVPFRWIAEELFWFLSGDTNETNLRARGVDIWREWADLEHTSRFGREEGDLGPV
                     YGYLWRSFGGHYPARDGVDQIARLVREIEANPNSRRLIVTGWDPRVADSVDLPPCHTL
                     FQFKVERGRVLHCQLYQRSADAFLGVPFNISSYALLTHMLAHVCGLEVGDFVHTFGDL
                     HIYRNHLRQVEEVLSREPMPLPRLEIKDEAGALRGLEGLLAFRYEHLSLTGYRPHGKI
                     EAPVAV"
BASE COUNT          379 a          754 c          915 g          416 t
ORIGIN      
        1 gttcaggcag agcagccagg ctatccatag cacgcctatc agcccggcga tgcccgcgac
       61 gggcatggct atcagcttta gccggttcgc gaacacttcg cccgtgttcc ggtgcgcctg
      121 cgcctgtggc ggcttcggga ggaagtcgtc gcgcgtggag ggagcgacga ggaagaagag
      181 ctggccgaag agcatgacgg ccgtcaggac gggcaggagg acgagccacg tgagcgtgag
      241 gttgcgcgtg atgacggaga cggcgcgcca agtgtcgtag ctgagcagcc cgcggcgcgg
      301 cgtcaggtag ttggcgaaga ggcgcaggtg gtgaatcggg tcgcgccacg cgttcatgga
      361 gctttcgctg cccccgccgt cccctgcggg ccggccgccc ccctcctccg gcgcgccggc
      421 cgcgaacctc tcgggctcga tctgctcgcg cggcgggaaa atgtccttta actcgcaggg
      481 gtaagtctcc tcgagtatga gccggttagc ttcgggggtg tggagcgggc tctgcgtgtc
      541 gccgtcccgc ggggcgccgt accgcaaggt cgagaagagc ctgtcgtcta tcgcgcggtt
      601 cagctcggcg gcgagcgccg cccgcgcctc gtcgagctgg cgctgggtcg ggtcgctctc
      661 attgaaggtc gccagaagca acttcatctc cggcgagaag cgctcgcgca gcgcgattga
      721 cacgtcgtcg ccgctcccgc gcagctttat catgaggctc acggggctct ttatgtcctc
      781 gggcaaaacc ttcacgtcat cgtcgccctg cgacggcgcg tgggcgcgcg agcttatctg
      841 gtcgcgcgag agccaggcgc tccaccagcc gccgacgtag ccgccgcccg atacggtcga
      901 gaggtagtcg aaaatcctca ggagcctcag cttgtgcagc ccctgaagca gcccgaggca
      961 gaaggtcgcg ctgcgtatgc cgccgcccga gagcgcaagg cccacgaggt tcatgggcgg
     1021 ggcgtcctcg cgcccccgcg ccttgttcgg gctcagatag agctgctggt gccgccgctc
     1081 gtttatctct tcccactcgt ctctgtaaac ggacttgaag agtacgccgc ggtcgtcttc
     1141 cggtgcgact tcggcggggg agggctgggc tttcatctct taactcctgg cgaggcggcc
     1201 gagactccct tggcggggag tgtgggcggg attttcgggg ccggccgagg cggcgaggcc
     1261 cggtggcgga ggcggcgccg tcgcgcgtcg aaagacggct tcaggccggg aaagtcggcg
     1321 tttctggcgt aaggggcgcg cccggcgaat taaacttgta tgtgagcggc cccggacaat
     1381 gacggctcgc aggcgagcat gagaggtgcg ggattataaa cgcccagcgc cccttgtcaa
     1441 cccccggcga ttcgccctcg aatatatatg aagagccggc cgattatatt tcgcgccggg
     1501 gcggcggctt cagacggcga cgggcgcttc tatcttgccg tgcgggcggt agcccgtgag
     1561 cgagaggtgc tcgtagcgga aggcgagcaa gccttcgagg ccgcgcaagg cgccggcctc
     1621 gtccttgatt tcgagacgcg gcagaggcat cggctcgcgg ctgagaacct cttcgacttg
     1681 gcggaggtgg ttgcggtaaa tgtggaggtc gccgaaggtg tggacgaagt cgccgacttc
     1741 cagcccgcag acgtgcgcga gcatgtgggt cagaagggcg taggagctta tgttgaaggg
     1801 gacgccgagg aaggcgtcgg ccgagcgctg gtagagctgg cagtggagca cgcgcccgcg
     1861 ctcgactttg aactggaaga gcgtgtggca gggcggcagg tcaacggagt ctgcgacgcg
     1921 cgggtcccag cccgtcacga tgaggcggcg gctgttcggg ttcgcctcga tctcgcggac
     1981 gaggcgcgcg atctgatcga cgccgtcgcg cgccgggtag tggccgccga acgaccgcca
     2041 gaggtagccg tagacggggc cgaggtcgcc ctcctcgcgc ccgaagcggg aggtgtgttc
     2101 gaggtccgcc cactcgcgcc agatgtccac gccgcgcgcg cgcaggttcg tctcgttcgt
     2161 gtcgccggag aggaaccaga agagctcctc ggcgatccag cggaagggga cgcgcttcgt
     2221 cgtgacgatg gggaagcctt cgcgcaggtc gtaggccgtc tggtagccga agtgcgagac
     2281 ggtgccgacg cccgtgcggt cttcgtgctc gacgccgcgg gcgaggtcgg tcctcaggag
     2341 gtcgtggtac tgtttcatcg ctctcggggc gcggagggcg tcatctcagg agaaaggtca
     2401 gtgggtcggc ggccgtgcac tcggcgtact gcccgccgcc gaggaaggcg cgtgccggcc
     2461 tgtc
//
LOCUS       DASPKR010000005         5460 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_647531, whole genome shotgun sequence.
ACCESSION   DASPKR010000005 DASPKR010000000
VERSION     DASPKR010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5460)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5460
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_647531"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..529
                     /locus_tag="VD968_00060"
     CDS             <1..529
                     /locus_tag="VD968_00060"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HYE12819.1"
                     /translation="GLRQHALAVEAAMRAAAPRYGGPDADPDEWGMTGLLHDFDYEMF
                     PTPDEHPYKGANILCGRGYPERVIRAIMGHATYTGVPRDTPMARALFATDELCGFLVA
                     CALVRPSKSLDDLEVSSVKKKLKDKAFARSVIREDIRQGVEELGVPLEEHVRFVIEAL
                     KPVQDRIGLKGGGEG"
     gene            complement(540..878)
                     /locus_tag="VD968_00065"
     CDS             complement(540..878)
                     /locus_tag="VD968_00065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12820.1"
                     /translation="MRWKLLIAATLAATLVGAGGCLAAAHFLLGSAGSLPFGGGLAAS
                     AALLVPVAAVTFATVFVYRHTARRRALQAAATALLASALTLAALATGAALLGPPAPDP
                     SAPPAPPTKA"
     gene            1001..1921
                     /locus_tag="VD968_00070"
     CDS             1001..1921
                     /locus_tag="VD968_00070"
                     /inference="COORDINATES: protein motif:HMM:NF013761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HYE12821.1"
                     /translation="MVARSTLLFLSRHEGLKDFAARFRPFQKMTTRFVAGEDIEATVR
                     AIRDLNAIGCTASFDHLNEAVTSEEEAREEVREYLKILARIEETGINSNVSIKLTQFG
                     LGFDPELAYRNARTVVEEAARRGNFVRVDMEESAVTQTTLDIFRRLRAEFGLNDVGIV
                     VQSYLRRTYDDVQDLLKIPARIRLCKGAYNEPPEVAFPDKRDVDENYVRCMKLLLSSG
                     VYHGIATHDERMIDATIEHARKEGIARDAFEFQMLYGVRRDLQEKLAREGYRMRVYVP
                     YGKHWYPYFMRRLAERPANVWFVLKNLLKG"
     gene            1925..2425
                     /locus_tag="VD968_00075"
     CDS             1925..2425
                     /locus_tag="VD968_00075"
                     /inference="COORDINATES: protein motif:HMM:NF014062.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HYE12822.1"
                     /translation="MSENFVWILWAILGIILVIAEIFTPGFVLLWFGVGALAAAVASA
                     LGLGFGLQFLVFILLSTALTALSRTIFVNYFNRPDGPDALKVGADALPGQVGTVVTSS
                     SGALNEGAVKVFGSVWTAYPAEGEPPLEAGDRVVVEHLRGASIYVRRVGSMPEWRAME
                     LTDGEK"
     gene            complement(2533..4083)
                     /gene="gcvPB"
                     /locus_tag="VD968_00080"
     CDS             complement(2533..4083)
                     /gene="gcvPB"
                     /locus_tag="VD968_00080"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF003346.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
                     /protein_id="HYE12823.1"
                     /translation="MSTHTPKASTHITQNEALVFERSQTGRRGYMLPALDVDETPLDE
                     LLPADLRRDDDLEGVPELSEVDVVRHFTRISTWNYNIDLGMYPLGSCTMKYNSRLNER
                     VARIPGFADLHPLAPEAEAQGALAVMHELQQHLAEITGLPGVSLQPAAGAHGEMTGVM
                     MIRAFLDARDGAAEGDRPKRNVMLIPDSAHGTNPASAHLSGFTVKTIRSTSEGLTDME
                     HLRELCSSGDVAGLMLTNPNTVGIFERNIVEICKVIHDAGGLVYMDGANMNALVGVAR
                     PGDMGVDVIHLNLHKTFSTPHGGGGPGSGPCCCTAELEPFLPVPRVVAVQGGEDGRPR
                     YALDYDRPRSIGRVKAFYGNFGMHLRALAYILTHGNAGLREATEAAVLNARFVAAGLA
                     DTFDKPFAPPPMHEVLFTDKRQSRKGVHTLDIAKRLIDYGFHPMTIYFPLIVQGAMLI
                     EPTESVGRAELQQFVDAMKEIAREAIEDPETVLNAPHTTRIGRLDEAAAARKPVLRWR
                     PAEKSATA"
     gene            complement(4087..>5460)
                     /gene="gcvPA"
                     /locus_tag="VD968_00085"
     CDS             complement(4087..>5460)
                     /gene="gcvPA"
                     /locus_tag="VD968_00085"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF001696.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HYE12824.1"
                     /translation="KRSSRNKVRYIPNSPEERQEMLGGLGLGSAEELFDSIPSDVLLR
                     GPLKTPPALSEPELLDYFNALAARNTAATRPSFLGAGAYKHYAPTIIDNLLQRSEFFT
                     AYTPYQPEISQGTLQAIFEFQTLVCQLTGLDVANASMYDGSTATAEAVLMAERVTRRS
                     RVLVSGAVHPEYMHVTETYVAHAGIGLERLATDGATGRTLLDGDGPALDKTVAAVVVQ
                     SPNFFGCVEDLKALADRAHAVGALLVVVVTESASFGLLRSPGACGADIVVAEGQSFGV
                     PVSYGGPYVGLFATSEKYVRQIPGRLAGIAYDSQGRRGFVLTLATREQHIRREKATSN
                     ICTNEGLIALAATIYMTTMGRRGLQEVAAQCAQKAAYARRRIASIEGFSLPYSAPVFN
                     EFVVRAPAAAEGLLARLSSEHNITGGLALSRYFPDRANDILVCVTETNRRDDIDALAA
                     GLEKLTR"
BASE COUNT          868 a         1725 c         1975 g          892 t
ORIGIN      
        1 gggcctgcgc cagcacgcgc tcgccgtcga ggccgcgatg cgcgccgccg ccccgcgcta
       61 cggcggcccc gacgccgacc ccgacgagtg ggggatgacg gggctgctgc acgacttcga
      121 ctacgagatg ttccccacgc cagacgagca cccctacaag ggcgcgaaca tcctctgcgg
      181 gcgcggctac cccgagcgcg tcatccgtgc catcatgggc cacgcaacct acacgggcgt
      241 cccgcgcgac acgccgatgg cgcgcgcgct gttcgcgacc gacgagcttt gcggcttcct
      301 cgtcgcctgt gcgctcgtgc gcccttcgaa gagtttggac gacctcgaag tctcctccgt
      361 caagaagaag ctgaaggaca aggcgttcgc gcgctccgtc atccgcgagg acatacgcca
      421 gggcgtcgaa gagctgggcg tcccgctcga agagcacgtg cgcttcgtca tcgaggcgct
      481 caagcccgtg caggatcgta tcggtctcaa aggcggcggg gagggctgat tgttggcggc
      541 tatgctttcg tcggcggcgc gggcggcgcg gaagggtcgg gggcgggcgg gccgagcagg
      601 gcggcgccgg tcgcgagcgc cgcgagcgtg agcgcagagg ctagcagtgc ggtcgccgcg
      661 gcttgtagcg cgcgtcggcg cgccgtgtgg cgatagacga agaccgtcgc gaaggtgacg
      721 gccgcgacgg ggacgagcag cgcggccgag gccgcgagcc ccccgccgaa gggcagagag
      781 ccggccgagc ctagcaggaa gtgcgcggcc gcgaggcacc cgcccgcccc gacgagcgtg
      841 gcggccagcg tggcggcgat gagcagtttc cagcgcaccc gttaggccat tcaggatttt
      901 aagattgtcg ttccccggcg agggttctta taagcggggc aaggatagca caggcggcgc
      961 gggcggcaca cgggttcggc ggcgcgcagg tcaggagatt atggtcgcta gaagcacact
     1021 acttttcctt tcgaggcacg aggggctgaa ggacttcgcg gcgcgcttcc gcccgttcca
     1081 gaagatgacg acgcggttcg tcgcgggcga ggacatagag gccaccgtcc gcgccattcg
     1141 cgacctgaac gcgataggct gcacggcctc attcgaccat ctcaacgagg cggtcactag
     1201 cgaggaggag gcgcgcgagg aggttcgcga gtacctgaag attctcgctc gcatcgagga
     1261 gaccggcatc aattcgaacg tctcgataaa gctcacgcag ttcggcctcg gcttcgaccc
     1321 ggagcttgcc tacaggaacg cccggacggt cgtcgaggag gcggctcgtc gcggcaactt
     1381 cgtgcgcgtt gacatggagg agtccgccgt cacgcaaacc acgctcgaca tattccgccg
     1441 cctccgcgcg gagttcggcc tcaacgacgt gggcatagtc gtccagtcgt acctgcggcg
     1501 gacttacgac gacgtgcaag acctactgaa aatccccgcg cgcatacgcc tgtgcaaggg
     1561 cgcgtacaac gagccgcccg aggtggcctt ccccgacaag cgggacgttg acgagaacta
     1621 cgtgcgctgc atgaagctgc tcctgtcgag cggcgtctat cacggcatcg ccacgcacga
     1681 cgagcgcatg attgacgcca ccatcgagca cgcgcggaaa gaggggatcg ctagggacgc
     1741 cttcgagttc cagatgctct acggcgtgcg gcgcgacctg caggagaaac tggcgcgcga
     1801 gggctaccgt atgagagtct atgtgccgta cgggaagcac tggtatccct acttcatgcg
     1861 gcggctggcc gagcggcccg cgaatgtctg gttcgtgctg aagaatctgc tgaagggctg
     1921 atagatgagc gaaaacttcg tctggattct ctgggccata ctcggcatca tcctcgtcat
     1981 cgccgaaatc ttcacgcccg gcttcgtgct gctctggttc ggcgtggggg cgctcgccgc
     2041 ggccgtcgcg agcgcgctcg gcctcgggtt cgggctccag ttcctcgtct tcatactcct
     2101 ctcgactgcg ctcacggcgc tctcgcgcac catcttcgtc aactacttca accggcccga
     2161 cggccccgat gctctcaagg tgggcgccga cgccctaccg ggccaggtcg gcacggtcgt
     2221 cacttcgagc agcggggcgt tgaacgaggg ggccgtcaaa gtcttcggct ccgtctggac
     2281 tgcctacccg gccgagggcg agccgccgct cgaggccggc gaccgcgtcg tcgtcgagca
     2341 cctgcgcggc gcctccatat acgtccgacg cgtcggctcc atgcccgagt ggcgcgcgat
     2401 ggaattaacg gacggggaga aataataagt cacgcccgcc ttcgctgagg gccggagcgg
     2461 gcgagcgtaa aagtagagcg cgccgcgcgg gaggtaggcc cggcggcgcg ctctcgttcg
     2521 aggtcgaagt tgtcaggccg tcgcggactt ctcggcgggg cgccaccgca ggacgggctt
     2581 gcgcgcggcg gcggcctcgt cgaggcggcc tatgcgcgtg gtgtgcggcg cgttcaagac
     2641 cgtctcgggg tcttcgatgg cctcgcgcgc tatctccttc atcgcgtcaa cgaactgctg
     2701 tagctcggcc cggcctaccg actcggtggg ctcgatgagc atggcgccct gcacgatgag
     2761 cgggaagtag atggtcatcg ggtggaagcc gtagtcaatg agccgcttcg cgatgtcgag
     2821 cgtgtggacg cctttacgcg actgcctctt gtcggtgaag aggacttcgt gcatgggcgg
     2881 cggcgcgaag ggcttgtcga aagtgtcggc cagcccggcg gcgacgaagc gcgcgttcag
     2941 caccgcggcc tcagtcgcct cgcgaaggcc ggcgttgccg tgcgtgagga tgtaggcgag
     3001 cgcccgcagg tgcatgccga agttgccgta gaaggctttg acgcggccga tggagcgcgg
     3061 gcggtcgtag tcgagcgcgt agcgcgggcg gccgtcctcg ccgccctgaa cagcgacgac
     3121 gcgcgggacg ggcaggaagg gctcaagctc ggcggtgcag cagcaggggc ccgagccggg
     3181 gccgccgccg ccgtgcggcg tcgagaatgt cttgtgcagg ttgaggtgga taacgtcaac
     3241 gcccatgtcg ccggggcgcg cgacgccgac gagcgcgttc atgttcgcgc cgtccatata
     3301 gacgagcccc cccgcgtcgt ggatgacctt acaaatctct acgatgttgc gctcgaatat
     3361 gccgaccgtg ttcgggttcg tgagcatcag ccccgccacg tcgcccgatg agcacagctc
     3421 gcgcaggtgc tccatgtctg tcagcccctc gctcgtcgag cgtatggtct tgacggtgaa
     3481 gccggagagg tgggccgacg cggggttggt gccgtgggcc gagtcgggaa tgagcatcac
     3541 gttccgcttc gggcggtcgc cctctgcggc gccgtcgcgc gcgtcgagga aggcgcggat
     3601 catcatgacg ccggtcatct cgccgtgcgc acccgcggcc ggctgcaaag agacgccggg
     3661 cagccccgtt atctcggcca ggtgctgctg caactcgtgc atgacggcca gcgcgccctg
     3721 cgcctcggcc tcgggcgcga gcgggtgcaa gtccgcgaag ccgggtatgc gcgccacgcg
     3781 ctcgttgagg cgcgagttgt acttcatcgt gcaggagccg agcgggtaca tgccgaggtc
     3841 aatgttgtag ttccacgtcg agatgcgcgt gaagtggcgc accacgtcca cctcggaaag
     3901 ctcgggtacg ccttcgaggt cgtcgtcgcg gcggaggtca gccggcagaa gctcgtcgag
     3961 cggcgtctcg tcaacgtcga gcgcgggcag catgtagccg cggcggccgg tctgcgaacg
     4021 ctcgaagacg agcgcctcgt tctgcgtgat gtgcgtgctt gctttgggag tgtgcgtgct
     4081 catcggctat cgcgtaagtt tttcgaggcc cgcggcgagg gcgtcaatgt cgtcgcgcct
     4141 gttggtctcg gtgacgcaga cgagaatgtc gttcgcgcgg tcggggaagt agcgcgagag
     4201 cgcgaggccg cccgttatgt tgtgctcgga cgagagccgg gcgagcagcc cttcggccgc
     4261 cgcgggcgcg cgcacgacga actcgttgaa gacgggcgcg gagtagggga gcgagaagcc
     4321 ttcgatcgag gcgatgcggc ggcgcgcgta tgcagccttc tgcgcgcact gcgcggcgac
     4381 ttcctgaagg ccgcgtcgcc ccatcgtcgt catgtagatg gtcgcggcga gcgcgatgag
     4441 cccctcgtta gtgcagatgt tcgaggtggc cttctcgcgg cgtatgtgct gctcgcgcgt
     4501 ggccagcgtg agcacgaagc cgcggcgccc ctgcgagtcg taggctattc cggcgagacg
     4561 gcccggaatc tggcggacgt acttctcgct cgtggcgaac agcccgacgt aggggccgcc
     4621 gtaggagacg gggactccga aggactggcc ctctgcgacg acgatgtcgg cgccgcacgc
     4681 gccgggcgag cgcagcaggc cgaacgaggc cgactcggtg acgacgacga cgagcagggc
     4741 gccgacggcg tgcgccctgt cggcgagcgc cttcaagtcc tccacgcagc cgaagaagtt
     4801 gggcgactgc acgacgacgg ccgcgaccgt cttgtcgagc gccgggccgt cgccgtcgag
     4861 gagcgtgcgg cccgtcgccc cgtccgtagc tagccgctcg agcccgatgc cggcgtgcgc
     4921 gacgtaagtc tccgtgacgt gcatgtactc cgggtgcacg gcgccggaga cgagcactcg
     4981 cgagcggcgg gtgacgcgct cggccatgag cactgcctcg gccgtcgcgg tcgagccgtc
     5041 gtacatcgag gcgttggcaa cgtcgaggcc cgtcaactgg cagacgagcg tctggaactc
     5101 gaagatggct tgcagcgtcc cctgggagat ttcaggctgg tagggcgtgt aggccgtaaa
     5161 gaactcggag cgctgtagga ggttgtcaat gattgtcggc gcgtagtgct tataggcgcc
     5221 ggcgccgagg aagctcgggc gcgtggccgc agtgttgcgc gcggcgagcg cgttgaagta
     5281 gtcgagcagt tccggctcgg agagcgcggg cggcgtcttg agcggcccgc gcaggaggac
     5341 gtcggagggg atggagtcga agagctcttc ggccgagccg agcccgaggc cgccaagcat
     5401 ctcctgccgc tcttccggcg agttcgggat gtagcgcact ttgttcctac tgctccgttt
//
LOCUS       DASPKR010000006         8907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1812376, whole genome shotgun sequence.
ACCESSION   DASPKR010000006 DASPKR010000000
VERSION     DASPKR010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8907)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8907
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1812376"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2172
                     /locus_tag="VD968_00090"
     CDS             <1..2172
                     /locus_tag="VD968_00090"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HYE12825.1"
                     /translation="SADACPSTPPGASVNPSGCTAGECYGPPSGMVGWWTGDGHAADV
                     QGPTHENGATLNGAGFAAGKVGQSFSLDGIDDRVEIPDSPAVSPTGAITVDAWVMPDS
                     ITQPTAFVAKYDSSTSQISYFFGTNQGGKLEFYVSQSGTDSLARYALTDAEVITPGVF
                     SHVAATFDPQTQAIRIFVNGQEVASSLVLSGTVTSVFDGTQPLYLGAYKNGAGVITGH
                     FDGLMDEVELFNRALTPHEIKAIYDAGAAGKCKPPTADLSLTKSPSRSPAVVTRILTY
                     TLAVKNWGPSPAQSVVVTDNLPTNAAYVSTITPVGTCARSGSTVTCQLGDMAPGQTVN
                     VEVRVRPNQPATLTNTASVASQTFDPVSSNNSHTVQTQAVIAADLSIKKVASKDPSLV
                     NQIFNYKLTVTNDGPATATGAVVTDNLPSGPTFMSAEPSQGTCSHAAGVVTCQLGSVA
                     SGAAATVIVRIRPRQAGTLVNTASVAGAEHDQDTSNNSATVTTSAIQSADLSVSKTES
                     ADPVLVGSQVTYTVKVTNNGFVAATGVTMTDTLPAGLGFVSAATSQGSVTSAPPAGSS
                     GQVVVALGNISVGATATVTITVTANEPGAFTDSATAAGNEADHEPGNNTKKQTTTVVT
                     LQKLLLSASTVVGGCQPYPTGTVYLTGPAPAGGVTVSLSSTNAGASPQTTVFIPAGAL
                     KSAAFAVPTSPVLSVQSGSVRATLGAKTIGRSLTVTPGVCN"
     gene            2385..2903
                     /locus_tag="VD968_00095"
     CDS             2385..2903
                     /locus_tag="VD968_00095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12826.1"
                     /translation="MPPTDESTQEELTRRHRASVSLIIGALASTLLLMGLAVSGWLGG
                     PRRNPQLEGALRIVIVFFGLGAVYLRRTRFALMRLQDIAALRGPRGLLAHLQKTTLYV
                     VLIADAIAVMGFAITLMTGFGSDMLWLGAIAVLVLLYAWPRRAAWQRVVEATTAGAAD
                     AGAGRAAKGTTA"
     gene            2921..4945
                     /locus_tag="VD968_00100"
     CDS             2921..4945
                     /locus_tag="VD968_00100"
                     /inference="COORDINATES: protein motif:HMM:NF024821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE12827.1"
                     /translation="MTLTAAPSCLLALFLLAAPAAGARQQSGAGERAQSQAAPAAAPQ
                     QLSERERRAKAYAKMLEGQRHFSGVRTGTLTVEGLRRAQAAFKEAAELDPTLAEAHTA
                     LAEIALFFDDLAQAEESGRTAARINPDNLGAHRILSRVYTVKSKLGDSAFNRAAAEQA
                     VAELREVARIRPSDAEAHALLAELYLATNREAEAVAALRRWAELPASLDNRFYQLVTK
                     GRELSPDAANARLGEVLLRSGKPAEAAAAIRRAMSLEPDNPRYLEMLGEALEAGGSAD
                     QGVVNELSRLVAQQPQNTVAVGMLARAQSRAGRVDDGVATLRAGIAAVKPGEDRDRLN
                     LQLQLANLFDEAGRYDEAVGVYEEMLRARNIGTSPLASERDRRFASAVIASIVNLRQQ
                     AGQPEQAAAAVERLRGLLGSSDPAAEIQAVNLLRSQGKRDEALETVRAARKRFPEEPR
                     LLRLEAFTLADLGRVEEALGLIRPRLKGQPSDYDEYVVIASLLMGAGRGAEAVEAARK
                     ALDLAPADDPDRATNALLLLSSAQERAGDAKASEETLRRILAKEPDNATALNNLGYFL
                     TERNERLEEALEMIQRAVRAEPTNASFLDSLGWVYFKLGKLPEAERYLSDAARRNPSS
                     VAIQEHLGDLFERRGQREKALAAWRKALALATEAADTARIKAKLNGSPNK"
     gene            5619..6080
                     /locus_tag="VD968_00105"
     CDS             5619..6080
                     /locus_tag="VD968_00105"
                     /inference="COORDINATES: protein motif:HMM:NF012415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HYE12828.1"
                     /translation="MSPPAAAAYASRTSSVTVSAAATGDERRTFDLINAERQRRGRRP
                     LVWDGSLTRVARYHSQNMAREGFFNHVDRDGLDLSGRAELLDVRGWKALGENIAYNQG
                     YPDPSAFAVERWMISDKHRENILNGEFTHAGLGIARSSDGRVFFTQVFMKR"
     gene            6162..7079
                     /gene="ispE"
                     /locus_tag="VD968_00110"
     CDS             6162..7079
                     /gene="ispE"
                     /locus_tag="VD968_00110"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: protein motif:HMM:NF011202.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HYE12829.1"
                     /translation="MPGEKFTVPAFAKVNLSLRVLGRRADGYHEIRTVFQTVSLNDTI
                     HFEPTADGSLELVCAQPGVPADRSNLVLRAAAALRERFGVRAGARVFLEKRIPAGGGL
                     GGGSSDAAVTLLALAHVWGLETGRRELSDLGAKLGADVPFFLTGGRALGMGRGEEILP
                     LEDVPRQHLVVVTPPLSVSTAEAYRSLSAPALTKVEAAANLSVSRAEAEIPPSLCEVM
                     RNDFEPVVSRLHPETGRAREALLRAGARCAMLSGSGSSVFGVFDSEAGALAAGERAAG
                     SGAGWRAFACSTLTRAEYKRALGKCAAIL"
     gene            7109..7180
                     /locus_tag="VD968_00115"
     tRNA            7109..7180
                     /locus_tag="VD968_00115"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7141..7143,aa:Gln,seq:ttg)
     gene            7275..8240
                     /locus_tag="VD968_00120"
     CDS             7275..8240
                     /locus_tag="VD968_00120"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016445698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HYE12830.1"
                     /translation="MSTTGGIKVFSGNANRELAQEICDYLKCKLGSATTDRFSDGEFN
                     FQINENVRGADIFIVQPTCPPTDAHLMELLVMLDAFRRSSAERVTAVIPYYGYARSDK
                     KDRPRVPISAKLVSNLIATAGANRVLTMDLHAAQIQGFFDIPVDHLFAAPVFIGHYAE
                     HRLPNLTVVAPDTGGAERARAYAKRLTSADGSPAQLALCDKRREKANVAEVMNIVGDV
                     RGRSCLIVDDMCDTGGSLTKVAAALRAAGADRIHACFTHPVLSGRACRLMAESDIERV
                     VTTNTIPLQDEACELEKIRVLSIAPLLAEAIKSIHEETSVSSLFV"
     gene            8287..>8907
                     /locus_tag="VD968_00125"
     CDS             8287..>8907
                     /locus_tag="VD968_00125"
                     /inference="COORDINATES: protein motif:HMM:TIGR00731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HYE12831.1"
                     /translation="MAEREEITVRAELRAGRGKNDARRLRARGMVPLTVYGGEGEAVA
                     AAAPLRELAAILRSETGPNTIFTLEVDGVGPSEVLFLDRQIDPVRGRLVHADLRRLVR
                     GQEIEVTVPLHLDGEPEGVRNGGGILEQLLREVEVRCRPRIIPDAIHADVTALNVHDV
                     LHVSDLQAPEGVTILTEPETAVATVAVVREEQVEERTPEEEVSEPEV"
BASE COUNT         1535 a         3084 c         2913 g         1375 t
ORIGIN      
        1 tcggccgacg cgtgcccttc gacgcctccg ggcgcctccg tcaacccctc cggttgcacg
       61 gcgggcgagt gctacggccc gccttcgggg atggtcggct ggtggacggg cgacggacac
      121 gcggcagacg tgcaaggccc cacgcacgag aacggcgcga ctttgaacgg cgcaggcttc
      181 gcggccggca aggtgggcca atcgttcagc ctcgacggca tagacgaccg cgtcgagata
      241 cccgacagcc ccgccgtgag cccgacgggg gccatcaccg ttgacgcttg ggtcatgccc
      301 gacagcatca ctcagccgac cgccttcgtc gccaagtacg actcctcgac aagccagata
      361 agctacttct tcggcacgaa tcagggcggg aagctggagt tctacgtctc gcagtcgggg
      421 accgacagcc tcgcgcgcta cgccctcacg gatgccgagg tcatcacgcc cggcgtcttc
      481 tcgcacgtcg cggccacctt cgacccgcag acgcaggcca tcaggatttt cgtcaacggg
      541 caggaggtcg cctcctcgct cgtgctctcc ggcaccgtca cctccgtctt cgacggcaca
      601 cagcccctct acctcggcgc ctacaagaac ggcgccggcg tgatcacggg ccacttcgac
      661 gggctcatgg acgaggttga gttgttcaac cgcgcgctca cgccgcacga aataaaggcg
      721 atttacgacg cgggggcggc cggcaagtgc aagccgccga ccgccgacct gtcgctgacg
      781 aagagcccct cgcgctcccc tgcggtagtc acgcgcatcc tgacctacac gctcgcggtc
      841 aagaactggg ggccgtcgcc cgcgcagtcg gtcgtcgtca ccgacaacct gccgacgaac
      901 gccgcatacg tctcgacgat aaccccggtc ggcacctgcg cccgctcggg ctcgaccgtc
      961 acctgccagc tcggcgacat ggcgccgggc cagaccgtca acgtggaggt aagagtcagg
     1021 ccgaaccagc cggcgacgct gacgaacaca gcctcggtcg ctagccagac cttcgacccc
     1081 gtctcgtcta acaacagcca caccgtgcag acgcaggccg tcatagccgc agacctttcc
     1141 atcaagaagg tcgcgtcgaa agacccctct ctcgtaaacc agatattcaa ctacaagctg
     1201 accgtcacga acgacggccc ggccacggcc acaggcgccg tcgtcaccga caacctaccc
     1261 tctggcccca ccttcatgtc ggccgagccc tcgcaaggca cctgctcgca cgccgcaggt
     1321 gtcgtcacat gccagttggg ctcggtcgcc tctggcgcgg cggcaaccgt catcgtcagg
     1381 ataaggccgc ggcaggccgg cacgctcgtc aacacggcgt cggtcgcggg cgccgagcac
     1441 gaccaggaca cttcgaacaa ctccgcgacg gtgacgacct cggcgataca gagcgccgac
     1501 ctctccgttt ccaagaccga gagtgcagac cccgtgctcg tcggctcgca ggtcacctac
     1561 acggtgaagg tgactaacaa cgggttcgtc gccgcgaccg gcgtcacgat gacggacacg
     1621 ctgcccgcag ggctcgggtt cgtctcggcc gcgacctcgc agggcagcgt cacgtccgcg
     1681 ccgcccgccg gctcttccgg tcaggtcgtc gtcgccctcg gcaacataag cgtcggcgcg
     1741 acagcgaccg tcacgataac ggtaacggcg aatgagccgg gcgccttcac ggactcggcc
     1801 acggccgcag gcaacgaggc cgaccacgag cccgggaaca acacgaagaa gcagacgacg
     1861 actgtggtga cgctacagaa gcttttgctc tcggcctcga cggtcgtcgg cgggtgtcag
     1921 ccgtacccga cggggacggt ctatctgacg gggcctgctc cggctggcgg agtgaccgtc
     1981 agcctttcga gcacaaacgc cggcgcgtct ccccagacca ccgtcttcat ccccgctgga
     2041 gccttgaaga gcgccgcgtt cgccgtgccg acgtcgcccg tcctgagcgt gcagtcgggc
     2101 tccgtgcgcg cgacactggg cgcgaagact atcggcaggt ctcttaccgt cacccccggc
     2161 gtttgcaact gaagcgccgc ccgcggcgct gaagccggaa gcggcggccc tcgtctttaa
     2221 cttatgagac gagggccgcc gcttccggct tcagcgcgaa ggtgcttcgg cgcgggctcg
     2281 tttgccgggc gagcgaagcg ggtgctagaa tttttccagt cccctagagc aagtttcttg
     2341 cgcgcccgac gcccgtcggg ccgcccgcga ggccaggagc cattttgccg ccgaccgacg
     2401 agagcacgca ggaagagctg acgcgccgcc atcgggcctc cgtgagcctg atcatcggcg
     2461 cgctcgcctc gacgctgctg ctgatggggc tggccgtctc gggctggctc ggaggcccgc
     2521 gcaggaaccc tcagctcgaa ggcgccctgc gaattgtcat agtctttttc ggcctcgggg
     2581 cggtctatct gcgccgcacg cgctttgcgc ttatgcgcct gcaagacatc gccgcgctgc
     2641 gcggcccgcg cggtctgctc gcgcatttgc agaagacgac cctgtacgtc gtgctcatag
     2701 cagacgccat agccgtcatg ggcttcgcca taaccctcat gacgggcttc ggcagtgaca
     2761 tgctctggct cggcgcaatc gcggtcttgg tgctcctgta cgcctggccg cgccgcgccg
     2821 catggcagag agtagtagaa gccaccacag ccggggcggc agacgcaggc gcgggcaggg
     2881 ccgcgaaagg aacaaccgcg tgaagctttc caaccgactc gtgacactca ccgcggcgcc
     2941 ctcatgcctc ttagcactct tcctgctcgc ggcgcccgcg gccggcgcgc ggcagcagtc
     3001 gggcgcgggc gagcgcgcgc agtcacaggc ggccccggcc gccgccccgc agcagctttc
     3061 ggagcgcgag cgccgcgcga aggcttacgc gaagatgctc gagggccagc gccacttctc
     3121 gggggtgagg acggggacgc tcacggtcga ggggctgcgg cgcgcgcagg cggccttcaa
     3181 ggaggcggcc gagctcgacc cgacgctcgc cgaggcgcac acggccctcg ccgaaatcgc
     3241 gctcttcttc gacgacctcg cgcaggccga agagtcgggc cgcacggccg cgcgcattaa
     3301 ccccgacaac ctcggcgcgc acagaatcct ctcgcgcgtg tacacggtca agagcaagct
     3361 cggcgatagc gcgttcaacc gcgccgccgc cgagcaggcc gtagccgagc ttcgcgaggt
     3421 cgcgcgcata cggccgagcg acgcggaggc ccacgcgctc ttagccgaac tatacctcgc
     3481 gacgaaccgg gaggcggagg cggtagccgc gctgaggcgc tgggcggagc ttccggcctc
     3541 gcttgataat cgcttctacc agctcgtcac gaaggggcgc gagctttcgc ccgacgccgc
     3601 caacgcccgt ctcggcgaag tccttctgcg ctcaggcaag cctgccgagg ccgcggccgc
     3661 catacgccgc gccatgtcat tagagcccga caacccgcgc tacctcgaaa tgcttggcga
     3721 ggcattggag gcgggcggct ccgcagacca gggcgtcgtg aacgagttga gccggctggt
     3781 cgcgcagcag ccgcagaaca ccgtcgccgt cggcatgctc gcgcgggcgc agtcccgcgc
     3841 cggccgcgtt gacgatggcg tggcgacgct gcgcgcaggc atcgcagccg tcaagcccgg
     3901 cgaagaccgc gaccgcctga accttcagct ccagctcgcg aacctcttcg acgaggccgg
     3961 gcgctacgac gaggccgtcg gcgtctatga ggagatgctg cgggccagga acataggcac
     4021 ctcgccgctc gcctccgagc gcgaccgccg cttcgcctcc gccgtcatcg cgagcatcgt
     4081 caacctgcgc cagcaggccg gccagcccga acaggccgcg gcggccgtcg agcgactgcg
     4141 cggcctgctc ggcagcagcg acccggccgc cgagatacag gccgtcaacc tcctgcgctc
     4201 gcagggcaag cgcgacgagg cgctggagac cgtccgcgca gcccgcaagc gcttccccga
     4261 agagccgcgc ctgctccgcc tcgaagcctt cacgctcgca gacctcgggc gcgtcgagga
     4321 ggcgctcggc ctcatacgcc cgcgcctgaa gggccagccg agcgactacg acgagtacgt
     4381 cgtaatcgcg agcctcctga tgggcgcggg ccgcggggca gaggccgtcg aggccgcgcg
     4441 caaggccctc gacctcgccc cggccgacga ccccgaccgc gccacgaatg ccttgctgct
     4501 gctctcctcg gcgcaggagc gagccggcga cgcgaaggcc tccgaagaga cgctgcgtcg
     4561 catacttgcc aaagagcccg acaacgcgac ggcgctcaac aacctcggct acttcctcac
     4621 ggagcgcaac gagcggctcg aggaggcgct cgaaatgatc cagcgcgccg tgcgcgccga
     4681 gcccacgaac gcctccttcc tcgacagctt agggtgggtc tattttaagc tgggcaaact
     4741 ccccgaggcc gagcgctacc tgagcgacgc cgcgcgccgc aacccctcct cagtcgccat
     4801 acaggagcac ctcggcgacc tcttcgagcg gcggggccag cgcgaaaagg cgctcgccgc
     4861 ctggcgcaaa gccctcgcgc tcgcgactga agccgccgac actgcccgca taaaagccaa
     4921 gctgaacggc tcgccgaata agtaaaaacg cgccaacacg gtcttccgtc acgacgggcc
     4981 tttcctgatc tcaccgctcg gttaaaagtc tcacaatatt cgtgacaacg ttgtgaagat
     5041 tcggcaacgg ccccacatcc atcagcatct cagaccctcc caactcggcc atgctgacac
     5101 cggccgcgtt cacgactctt ccatcgaaaa aactgttgat taggttgaga ttagtgggta
     5161 aagtgtgcgc gcctttcaag cgggcataat ggtcggagcg ctagcttcat cagccccgac
     5221 cgcccgcatt ccaacctagt attttgtagt aaagcagttc tggcctccga gctttgagcg
     5281 ctgggccgtc gtgcgaaatt ctaattgacg actgtttaat ccatgtttta caattatcaa
     5341 caggttggcc ggttgcccct tcacggtctg tttgagagca cctccggccg ataaaagttt
     5401 taggagttcc cccaatgttt acaaggcggt tcccctgtag cgcgctcttt agaaagagtt
     5461 tacaagcgtg cgcaataatt tcggcggtca ccctcccgtg cgtccccaca tcggccacgg
     5521 gcaacggcac gaagcccgcc tccaagcccg ttgcccgcct gctttcgacc tcccgccagg
     5581 aaatccccgc aagaacccgc gcgcggctca tctcgcgcat gtcgccgccg gcggcggccg
     5641 cctacgcctc gcgcacctct tccgtcacgg tctcggccgc ggcgacgggc gacgagcggc
     5701 gcactttcga tttgataaac gccgagcgcc agcgccgcgg ccgcaggccg ctcgtatggg
     5761 acggctcgct tacacgcgtg gcgcgctacc actcgcagaa catggcgcgc gaggggttct
     5821 tcaaccacgt ggacagggac gggctggact tgtccgggcg cgccgaactt ctggacgtgc
     5881 gcggctggaa ggctttgggc gagaacatcg cgtataatca gggctacccc gacccttcgg
     5941 ccttcgccgt cgagcgctgg atgatctcgg acaagcaccg cgagaacatc ctgaacggcg
     6001 agttcacgca cgccgggctc gggatcgctc gctcttcgga cggcagggtt tttttcacgc
     6061 aggtcttcat gaagcgctga ggccgggagg cgtttaaccg ctgctgggct taaaacgcgg
     6121 ccggcgcttc ccccgcggag gaggcgccgg ccgcttacgt cgtgcccgga gagaagttta
     6181 cagtcccggc cttcgccaaa gtcaacctct cgctgcgcgt gctggggcgg cgcgccgacg
     6241 gctatcacga aatccgcacg gtcttccaga ccgtctccct aaacgacaca atccacttcg
     6301 agccgaccgc ggacgggagc cttgagctcg tctgcgcgca gccgggcgtc ccggctgaca
     6361 ggagcaacct tgtgctgcgg gccgccgcag ccttgcgcga gcgcttcggc gtgcgcgcgg
     6421 gcgcgcgagt cttcttggag aagcggattc cggcgggcgg cggtttgggc ggcggctcgt
     6481 cggacgcagc cgtgacgctc cttgcgctcg cgcacgtctg ggggctcgaa accggccggc
     6541 gcgagctgtc ggatttgggg gcgaagctgg gcgccgatgt gccgtttttc ctgacgggtg
     6601 gcagggcgct cgggatgggg cgcggtgaag agattctgcc gctcgaagac gtgccgagac
     6661 aacacttagt cgtggtcacg ccgcccctct cggtctcgac cgcggaggct tacaggagcc
     6721 tcagcgctcc cgccttgaca aaggtagagg cggccgctaa cctgtctgtt tcgcgcgcgg
     6781 aggccgaaat cccgccgtct ctctgtgagg tcatgcgcaa tgatttcgag ccggtggtga
     6841 gccgcctcca cccggagacg gggcgggcgc gcgaggcgct tttgagggcg ggcgcccgct
     6901 gcgcgatgct ttcgggcagc gggtcgagcg tcttcggcgt ttttgacagt gaggccggcg
     6961 cgctcgccgc gggcgagcgg gcagccggca gcggggctgg ctggcgcgcg ttcgcgtgct
     7021 cgacgcttac gcgcgcggag tacaagaggg cgctcggtaa gtgcgcggcg attctctgaa
     7081 aaggcggggc cgcgaacgag gaagggattg gggagtcgcc aagtggtaag gcaccggtct
     7141 ttggaaccgg cattcgtagg ttcgagtcct acctccccag ctaagaacta gaggtcaggg
     7201 gccggaagtc agaggtcagt taaagactgg cgcccgctga ctcctgacct ctggcctctg
     7261 acctctgaaa aaggatgagc accaccggcg gtatcaaagt cttttccggg aacgctaacc
     7321 gggagcttgc gcaggagatt tgcgactacc tgaagtgcaa gctcggcagc gcgacgaccg
     7381 acaggttctc ggacggcgag ttcaacttcc agataaacga gaacgtccgc ggcgccgaca
     7441 tcttcatcgt gcagccgacc tgcccgccga cggacgcgca cctgatggag ttgctcgtga
     7501 tgctagacgc gttccgccgc tcctcggccg agcgcgtgac ggccgtcatc ccctactacg
     7561 gctacgcgcg ctcggacaag aaggatcgcc cgagagtccc catctcggcg aagctcgtct
     7621 cgaacctgat agcgacggcc ggggcgaacc gcgtgctcac gatggacttg cacgcggcgc
     7681 agattcaggg cttctttgac atacccgttg accacctgtt cgcagcgccg gtcttcatag
     7741 gccactacgc cgagcaccgc ctgccgaacc tgaccgtggt cgcgcccgac acgggcgggg
     7801 cggagagggc gcgcgcgtac gccaagcgcc tgacctcggc ggacgggagc cccgcgcagc
     7861 tcgccctgtg cgacaagcgg cgcgagaagg cgaacgtcgc ggaggtcatg aacatcgtcg
     7921 gcgacgtgcg cggccgtagt tgcctgatag ttgatgacat gtgcgacacg ggcgggtctc
     7981 tgacgaaggt cgcggcggcg ctgcgcgccg cgggcgccga ccgcatacac gcgtgcttca
     8041 cgcatcccgt tctctcgggc agggcgtgca ggctcatggc ggagtccgac atcgagcgcg
     8101 tggtgactac gaacaccatc ccgctccagg acgaggcgtg cgagctggag aagataaggg
     8161 tgctcagcat cgcgccgcta ctggcggagg cgatcaagtc catacacgag gagacgagcg
     8221 tctcctcgct attcgtgtga tgcgcgctgc ggcggccgac cagccgagcg ccacttggga
     8281 gtgatcatgg cagagagaga agagataact gtgcgcgctg agctgcgcgc cgggcgcggt
     8341 aagaacgacg cgcgcaggct tcgcgcgcgc ggcatggtgc cgctgaccgt ttacggcggc
     8401 gagggcgagg ccgtcgcggc cgccgcgccg ctgcgcgagc ttgcggccat cctgcgctcc
     8461 gagacggggc cgaacaccat cttcacgctc gaggttgacg gcgtcggccc gagcgaggtg
     8521 cttttcctcg acaggcagat agaccccgtg cgcggccggc tcgtgcacgc agacctgcgc
     8581 cgcctcgtgc gcgggcagga gatagaggtc acggtgcctc tgcacctcga cggcgagccc
     8641 gagggcgttc gcaacggggg cgggatactc gagcaactcc tgcgcgaagt cgaggtgcgc
     8701 tgccgcccgc gcataatccc ggacgcgatc catgccgacg ttacggccct gaatgtccac
     8761 gacgtactgc acgtgagcga ccttcaggcg cccgagggcg tcaccatcct gacggagccg
     8821 gagacggccg tcgcgacggt cgccgtcgtg cgcgaggagc aggtcgagga gcgcacgccc
     8881 gaggaggaag tctccgagcc cgaagtc
//
LOCUS       DASPKR010000007         3677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1294714, whole genome shotgun sequence.
ACCESSION   DASPKR010000007 DASPKR010000000
VERSION     DASPKR010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3677)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3677
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1294714"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..647)
                     /locus_tag="VD968_00130"
     CDS             complement(<1..647)
                     /locus_tag="VD968_00130"
                     /inference="COORDINATES: protein motif:HMM:NF024294.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE12832.1"
                     /translation="MRLLITNGHVIDPSQGMNAGRDLLIEDGRVAGLLGRGEPRPDGA
                     EVFDATGLVVAPGFIDLHTHLREPGQEYKETIATGAAAAVAGGYASVCAMPNTDPVND
                     NPAVTSFIIEQAQAAGLANVFPVGAITKGSKGEELAEMGEMKRAGIVAVTDDGRPVPS
                     PGLMRRAMEYARGFGLTVMDHCEDRSLAAGGVMHEGAWSLRLGLRGAPALAEESDA"
     gene            complement(663..1703)
                     /locus_tag="VD968_00135"
     CDS             complement(663..1703)
                     /locus_tag="VD968_00135"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HYE12833.1"
                     /translation="MRTALQQKHLLGIRGMTAAEIALFLDTAEAFREISEREIKKVPT
                     LRGRTVINLFFEPSTRTRTSFEIAGKRLSADVINISASSSSVTKGETLLDTARNLEAM
                     GPDLIVIRHPSAGAPHQLARVCRASVVNAGDGAHEHPTQALLDAMTIRQRKGRVDGLN
                     VAIIGDILHSRVARSNAHLLTTLGASVRVAGPGTLAPPEFASLVEGGGLTVEPRIESA
                     LEGADVVMILRIQRERQDKAFLPSLREYAVHYGLNMKRLALAAPDAIVMHPGPMNRGI
                     EIASDVADGARSLILDQVANGLALRMAVLYLLGGGTGTTTASPTTPPQAETEPAPEPL
                     RAAVAASSESHG"
     gene            complement(1745..2311)
                     /gene="pyrR"
                     /locus_tag="VD968_00140"
     CDS             complement(1745..2311)
                     /gene="pyrR"
                     /locus_tag="VD968_00140"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: protein motif:HMM:NF003549.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HYE12834.1"
                     /translation="MELVEKARIMDGMRINRALARLASEIVEENHGAGHLYLIGIQRR
                     GVPLANRLADKIADLEGERPPVGVLDITLYRDDLSTVGANPVVNRTDLPVDVEGRNVL
                     LIDDVLYTGRTIRAALDQLIDFGRPRRVQLAVLVDRGKEHRELPIQADFVGKFVPTKK
                     SEIIKVMLDDFDGEEGVAIVERPHPAEG"
     gene            2517..>3677
                     /locus_tag="VD968_00145"
     CDS             2517..>3677
                     /locus_tag="VD968_00145"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYE12835.1"
                     /translation="MRSSINSYLGDYLRRGSETAFAHRRGLRVERWSYRRTAEAAYHF
                     ARELEARGVGRGERVLIWGVNSPEWVAAFFGCAARGAVVVPLDVESAPDFVARVREQT
                     KARLVLFSEETREAAGRLEGLPRLALEELEGTAARHSPEPFEAEGVGAGDLLEIIYTS
                     GTTAEPRGVVLTHGNLLANLAPIEEEVGKYLRWERLVHPIRFLSLLPLSHVFGQFMGI
                     FVPQLLGGEVFFQNSLNPSEIIGSIKRQRVSVVVTVPRLLETLREHVERQEEARGRLA
                     EFRRAIEEAKGAHPAARLWKFRRLHRRFGWKFWAFVTGGATLAEETETFWRRAGFAVL
                     QGYGMTETASLITVNHPFKSARGAVGKILPGHEVKLGEGGEILVRGKNVSPGY"
BASE COUNT          553 a         1176 c         1319 g          629 t
ORIGIN      
        1 gcgtccgact cctcggcgag cgccggtgcg ccgcgaaggc cgagccgcag agaccacgcg
       61 ccctcgtgca tcacgccgcc cgccgcgagc gacctgtcct cgcagtgatc catcaccgtc
      121 agcccgaagc cgcgcgcgta ctccatcgcg cggcgcatca atcccggcga agggacgggc
      181 ctgccgtcgt ctgtaacggc gacgatgccg gctcgcttca tctcgcccat ctcggcaagc
      241 tcctcgccct tcgagccttt ggtgattgcg ccgacgggga agacgttggc gaggccggcg
      301 gcctgagcct gctcgatgat gaagctggta acggcggggt tgtcgttgac ggggtcggtg
      361 ttcggcatgg cgcagacgga agcgtacccg cccgcgaccg cggcggccgc gcccgtcgcg
      421 atggtctcct tgtactcctg gcccggctcg cgcaggtgcg tgtgcaggtc aatgaagccg
      481 ggcgcgacga ccaggcccgt cgcgtcgaag acttctgcgc cgtcgggccg cggctcgccc
      541 cggccgagca agcccgcgac gcgcccgtcc tctataagca ggtcgcggcc ggcgttcatc
      601 ccttgcgaag ggtctatgac gtggccgttc gtgataagca gtctcatcag ttttgggtgc
      661 ggtcagccgt gcgactcgga gcttgcggcg acggcggcgc ggagcggctc tggcgcgggc
      721 tccgtctcgg cctgcggcgg cgtcgtgggc gaggcggtcg tcgtccccgt ccctccgccg
      781 aggaggtaga ggacggccat gcgcagggcg aggccgttag cgacctggtc gagtatgagc
      841 gagcgggcgc cgtcggccac gtccgaagct atctcgatgc cgcggttcat ggggccgggg
      901 tgcatcacga ttgcgtcggg cgcggcgagc gcgagccgct tcatgttcag gccgtagtgg
      961 actgcgtact cgcgcaagga ggggaggaag gctttgtcct gccgttcgcg ctgtatgcgc
     1021 aaaatcatca ccacgtcggc gccttcgagc gcgctctcga tacggggctc gaccgtcagc
     1081 cccccgccct ccacgagcga ggcgaactct ggcggcgcga gcgtgccggg gccggccacg
     1141 cggacgctcg cgccgagcgt cgtcaggagg tgcgcgttcg agcgcgcgac gcgcgagtgg
     1201 agtatgtcgc cgatgatggc gacgttgagg ccatctacgc gccccttgcg ctggcgtatg
     1261 gtcatggcgt cgagcagggc ctgcgtcggg tgctcgtgcg cgccgtcgcc cgcgttgacg
     1321 accgaggcgc ggcagacgcg cgcgagttgg tgcggggcgc cggccgaggg gtgacgtatt
     1381 acaatcaagt ccggccccat cgcttcgagg ttgcgcgccg tgtctaagag cgtctcgccc
     1441 ttcgtgacgg aggaggacga tgcgctgatg ttaatgacgt cggccgagag gcgtttgcct
     1501 gcaatctcaa aggaggtgcg cgtgcgcgtg gagggctcga agaagaggtt gatgacggtg
     1561 cggccgcgca gcgtcggcac cttctttatc tcgcgctcgg agatttcgcg gaacgcctca
     1621 gccgtgtcga ggaagagcgc gatctccgcg gccgtcatgc cgcgtatgcc gagcaggtgc
     1681 ttttgctgga gcgccgttct cattctttaa acaaaaaagg cggccatcgc tggccgccgc
     1741 ccctctaccc ttccgccggg tggggtcgct ctacgatggc gacgccctcc tccccatcga
     1801 agtcgtcgag catcaccttg attatctcgc tcttcttcgt cggcacgaac ttcccgacga
     1861 agtcggcctg tatgggaagc tcgcggtgct ctttgccgcg gtcaacgagt acggcgagct
     1921 ggacgcggcg cggccggcca aagtctatga gctggtcgag cgcggcgcgt atggttcggc
     1981 ccgtgtagag cacgtcgtct atgaggagga cgttgcggcc ctcgacgtcc acgggcaggt
     2041 ctgtgcggtt gacgactggg ttggcgccga ctgtggagag gtcgtcgcgg tagagcgtga
     2101 tgtcgaggac gccgacggga gggcgctcgc cttcgaggtc ggctatcttg tcggccagtc
     2161 ggttagccag aggcacgccg cgccgctgaa tcccgatgag gtagaggtgg cccgcaccgt
     2221 ggttctcctc gacgatctcg gaggcgagcc tcgccagcgc gcggttaatc cgcatgccgt
     2281 ccattatccg tgccttctcg actaattcca tcgcgcggga tactaacaca gcgccgcccg
     2341 gcgatggaag attcgcgcgc cgggactacc gaaagccgcg cctgcgggca agatgagaaa
     2401 gtgtcacaac gccccgtctc gagcccccca ccgcctcgac aatggtcggc gcgggacgca
     2461 aaatttatac gagcgcccgg gcgcgcggcg cggcggattt ttagggcaag gggtatatgc
     2521 gttcgagcat taatagctat ctgggtgatt atctccggcg gggctcggag acggccttcg
     2581 cgcacaggag gggcctgcgc gtcgagcgct ggtcgtacag gcggacggcg gaggccgcct
     2641 accacttcgc gcgcgaattg gaggcgcgcg gcgtagggcg tggcgagcgc gtgctcatct
     2701 ggggcgtgaa ctcgcccgag tgggtcgcgg cgttcttcgg ctgcgcggcg cgcggcgcgg
     2761 tcgtcgtgcc tctggacgtg gagagcgcgc cggatttcgt cgcgcgcgtg cgcgagcaga
     2821 cgaaggcgcg gcttgtgctt tttagcgagg agacgaggga ggcggccggg cgactggaag
     2881 ggctgccccg cctcgcgctc gaagagcttg aggggactgc cgcgcgacat tcacccgagc
     2941 cgttcgaggc cgagggcgta ggggccggcg acctgctcga gataatctac acgtcgggga
     3001 cgacggccga gccgcgcggc gtcgtgctca cgcacggcaa cctgctcgcc aacctcgcgc
     3061 ccatcgaaga ggaagtgggc aagtacctgc gatgggagcg gctcgttcac cctataaggt
     3121 ttttaagcct cctgccgctc agccacgtct tcgggcagtt catgggcatc ttcgtcccgc
     3181 aactgctcgg cggcgaagtc ttcttccaga attcgctcaa cccctcggag ataatcggga
     3241 gcataaagag gcagcgcgtc tcggtcgtcg tcacggtccc gcgcctgctc gaaacccttc
     3301 gcgagcacgt cgagcggcag gaggaggcgc gcggccgcct cgcagagttc cggcgcgcaa
     3361 tcgaagaggc gaagggcgcg caccccgccg cgcggctctg gaagttccgg cgactgcacc
     3421 gccgcttcgg ctggaagttc tgggccttcg tcacgggcgg cgccacgctc gccgaggaga
     3481 ccgagacgtt ctggcgccgc gccggcttcg cagttctgca aggctacggg atgactgaga
     3541 cggcctcgct catcaccgtc aaccacccgt tcaagtctgc gcgcggggcg gtggggaaga
     3601 ttctgccggg ccacgaggtg aagctcggcg agggcggcga gattctggtg cgcggcaaga
     3661 acgtctcgcc cggctac
//
LOCUS       DASPKR010000008        10756 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_389016, whole genome shotgun sequence.
ACCESSION   DASPKR010000008 DASPKR010000000
VERSION     DASPKR010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10756)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10756
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389016"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..573
                     /locus_tag="VD968_00150"
     CDS             <1..573
                     /locus_tag="VD968_00150"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HYE12836.1"
                     /translation="SERTFKVASELVRAGVKPAKVSQAVFASYPWSKIELLGEVLTTL
                     KRDESGRVAWLVQTQEMQRRTGASDEDGDGFVNYPMSCGDVEACAFFKETSPGTYRVS
                     LRSKCDVNVARIAERFGGGGHRNAAGCTFHGTVADAERDIVSLLVDAVDNRGVGAATG
                     PLPAQAALDARPQEVVAAAEHRGAERDARP"
     gene            700..1662
                     /gene="accD"
                     /locus_tag="VD968_00155"
     CDS             700..1662
                     /gene="accD"
                     /locus_tag="VD968_00155"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HYE12837.1"
                     /translation="MTWFKKRNQRIEPVPADERRVKTEGIFVKCPECDAALYRRELEE
                     SFQVCSHCKHHFRLDARTRLAMFYDEGKYEELDAEVTSTDPLEFTDTKPYKQRLEQAR
                     RATGLPEAVINGRGRVGGHLTFIAAMDFNFLGGSMGSAVGEKITRLIERAVRERGAVV
                     IVSQSGGARMQEGTLSLMQMAKISAALALLDEARLPYISVMTDPTTGGVTASFAMLGD
                     INIAEPKALIGFAGPRVIEQTIRQKLPKDFQTSEFLVEHGMLDAVIDRREMRAFLIRA
                     LDFMMNPEAQFKPVRARLPLGNGAGAPPELQQEEAPPTKLKVQS"
     gene            1668..2984
                     /locus_tag="VD968_00160"
     CDS             1668..2984
                     /locus_tag="VD968_00160"
                     /inference="COORDINATES: protein motif:HMM:TIGR01499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HYE12838.1"
                     /translation="MDFGESVAYLLGLGHETAAMKLGLEGIGRLLARLGDPHKVFTSV
                     QIAGTNGKGSTAAMLEAVCLAAGLRAGLYTSPHLVSITERVRVGGREVAPEEFARAAS
                     RVREAAEALEREGGALPTFFEQVTAIALTHFREAGVELAILETGLGGRLDATTAAGAS
                     VVAVTPVALDHQEHLGHTLAEIAAEKAAIIRPGVEAVVAPQEPEAAGVIERRCRDCGV
                     RPRRAEPFEAEGACGDGRLRGRVRTERREYGSACLALRGRHQLVNAAAAVALAEALID
                     AGFYVAPEHVLAGLETAEHAGRLEIDRGHGEPAMLFDGAHNPSGARALRDYLDEFAAG
                     RVTMVFGAMRDKALAEIGAILFPAAEHLVLTQPRNPRAAPVEELLRAVPAPAHSSTIA
                     LAPSSADALTIARAHTPPDGLVCVTGSLYLVGEVKAALAGAGSLRG"
     gene            2981..3481
                     /locus_tag="VD968_00165"
     CDS             2981..3481
                     /locus_tag="VD968_00165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12839.1"
                     /translation="MSVSRESRRLLWVSVGVALVGALVLLPLAWLATRMYQEAGQRRV
                     AAANEAAAIAALESISAAEHLYFQSKGEYGTFPQLVESGFFQAPLTGEGLVASGYAFT
                     LRVTPRSAERAPFYSVNADPLKSGGRDATGRRHFYIDSDITGMRYNEERPAGPSDKAR
                     QTVQQP"
     gene            3486..4055
                     /locus_tag="VD968_00170"
     CDS             3486..4055
                     /locus_tag="VD968_00170"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HYE12840.1"
                     /translation="MTDSNDGPPEVLATEEIYRGRIFDVAVDTVREGARTYTREVVRH
                     NGGAAAVACFDDGTVALVRQYRHPAGRYVLELPAGKLEEGEPPAVCAARELEEEVGAV
                     PGRMELLSEFFTTPGFCGEKIWVFLATELTETAPTHEEDELIEVVRLPVGRAVEMIGS
                     REIEDAKTVIGLLLAARRIGARAGGAAEP"
     gene            complement(4063..6303)
                     /locus_tag="VD968_00175"
     CDS             complement(4063..6303)
                     /locus_tag="VD968_00175"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HYE12841.1"
                     /translation="MNRQLLYNPLRWLIIGAGAVICVVSALNLKAEALDTRFLFLTIL
                     TVTVASRITVRMPSVNGRITISETFIFLTMLLYGGEAAVLLAAAEGVCASVRMVKKPA
                     NLLLNGGVMAASTFLTVWALRSCFGPIINLPHSSVPATYVSALCVMALVQYVVNTGLA
                     AAVQACKMGESVWHTWSKYCLWSSITYLAGAPAAYLIVKLIAAVGFSAVMVSTPIIGI
                     LYLTYRTYLKNIEVMAAAAKAEAAAAAEAEASAAQAEQARRHIEELSHYIAEQERISQ
                     ALKESKDHFRHAAFHDALTGLPNRMLITDNLRLALERAHRCAGYHFAVLFLDLDRFKN
                     VNDSLGHTVGDELLVAIARRLEAGLRPADMVARLGGDEFAILLDGISGVGDATGTAER
                     IQEALSAPFSLRGHEVFTTTSVGIALGGVGYESPEDILRDADIAMYRAKDKGKACHEV
                     FAASMYTRAVTLMQMENDLRRALEREELRVHYQPVVSLTTGRISGFEALVRWQHPERG
                     MVPPGDFIPMAEETGLILPLGLWVLREACRQVREWQGRSPMHRALTLSVNLSGKQFMQ
                     PDLVEHVEDVLRETDFDPRCLQLEITESVLMDSAESAVAMLEALRAIGARVSIDDFGT
                     GYSSLSYLHRFPINTLKIDRSFVGRMGPGVEKAEIVRTIVTLARNLGMEVVAEGVETL
                     DQSEQLRALECDYAQGYLYSKPVSGEAAGALLAKRSPWHLSYGDVPGESYPATALNNV
                     RYLKFA"
     gene            complement(6363..7202)
                     /locus_tag="VD968_00180"
     CDS             complement(6363..7202)
                     /locus_tag="VD968_00180"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE12842.1"
                     /translation="MTIHALKDKGDEPEVLAFLAERYRQTFFMAGLIRDNGFESPLNR
                     GTFYACRDAQGRLVGVALIGHFTLVETQSEEALAAFARCAKAHPFADVIAGDPESVER
                     FWHHYAPAGRAADLASRKLLFELREPAAAGEAVPGLRRATLAELPQVMEAQALMLYEE
                     KGVNPLASDPDGFRQRCARRIEQGRVWVWFRRGRLIFKADVMAETPETVYLEGVYVSP
                     EARGKGFGRRCVAQLGRHFAARTRSLCLLVNEQNKRAHAFYEKSGFSLTGYYEALYLQ
                     RSH"
     gene            complement(7335..9197)
                     /locus_tag="VD968_00185"
     CDS             complement(7335..9197)
                     /locus_tag="VD968_00185"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYE12843.1"
                     /translation="MTTPVQERVRQAGTGAETVSVILQLNGPASGPLNGLLESAGVRV
                     KGRFSNFNSIAVDLPAGTVEALKSYSEIVSVTLNKSVRSLGHVSATSGADAARTTSGI
                     NVLGLDGTGIGIAVLDSGMDSAHTSFLDKSNNVRVVVSHDFTGEGRTDDPYGHGTHVA
                     STVAGNGRISNANYIGIAPNANIINLRVLGSQGAGSVANVLGALDWVMTNRAAYNIRV
                     VNMSLGTLAVDSYRNDPMCRAVRRLVDAGVVVVAAAGNNGKDGAGRKVYGQVHSPGNE
                     PSALTVGATNTFGTNARGDDHVTTYSSRGPTRSFWTDTDGRKHYDNQIKPELVAPGNK
                     LVYAQARNNLLVTQNPQMDASVSPVSVRNMMFMNGTSMSAPVAAGAAALMLQANPRLT
                     PNMVKMILMYTAQRLPGFNVFEQGAGQLNIEGAVRLARLVRTDLTNSTPLGAPLLTSL
                     LPPAQQTTIAGHTFPWAQGIIAGRTYATGFNLIDRYQKAYGTGVLFGDGVLFGDGVLF
                     GDGVLFGDGVLFGDKIMNGDGVLFGDGQPLLPVGVLFGDGVLFGDGVLFGDGVLFGDG
                     VLFGDGVLFGDGVLFGDSAALNTAILMAQSATANGDGTASMAVSVDTGFDFLGY"
     gene            9580..10380
                     /locus_tag="VD968_00190"
     CDS             9580..10380
                     /locus_tag="VD968_00190"
                     /inference="COORDINATES: protein motif:HMM:TIGR00530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYE12844.1"
                     /translation="MTSSSEVTAEARDNPRTPEPRRPTLVNYLHSAAAIPLIYIYTVV
                     MATLSLLVSLWDPEGRRQHWCASAWSRMIARTVGARVRVVGAEHIEPGASYVFLSTHQ
                     SYMDIPVMLGYLPAQLRIAAKREVFRIPFLGWHMRRAGHISINRGSTTEAVESLRRAA
                     SEVRPGVSVFLYPEGTRSRDGRLQPFKKGGFKFALQTGLPVVPVAIVGTRALLPRDSI
                     VFRPGPVELRVSPPILTSGLADSDLPGLMQCTRAVMEGHFSGAPAGGS"
     gene            10546..>10756
                     /locus_tag="VD968_00195"
     CDS             10546..>10756
                     /locus_tag="VD968_00195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12845.1"
                     /translation="MTGKKKRRDEPGEAIETALAEIRASLAGLAEQFGAGGAQHRLGT
                     PVAFQPVFLPAMAPGEPAPTQNIPLG"
BASE COUNT         1773 a         3664 c         3592 g         1727 t
ORIGIN      
        1 tcggagcgca ccttcaaggt cgcctccgag cttgtgcgcg ccggcgttaa gcccgcgaag
       61 gtgtcgcagg ccgtcttcgc cagctacccg tggagcaaga tagagctgct gggcgaggtg
      121 ctgaccacgc tcaagcgcga cgagtccggg cgcgtcgcgt ggctcgtgca gacgcaggag
      181 atgcagcggc gcacgggcgc ctcggacgag gacggcgacg gcttcgtcaa ctacccgatg
      241 agctgcggcg acgtggaggc gtgcgccttc ttcaaggaga cctcgcccgg cacctaccgc
      301 gtctccctgc gctcgaagtg cgacgtgaac gtggcgcgca tcgccgagcg cttcggcggc
      361 ggcggccacc gaaacgccgc cgggtgcacc ttccacggaa ccgtcgccga cgccgagcgc
      421 gacatagtca gcctgctcgt tgacgccgtt gacaaccgag gcgtcggcgc ggccaccggc
      481 ccgctcccgg cccaggcagc gctcgacgcc cgcccgcagg aggtcgtggc agccgccgag
      541 caccggggcg cagagcgcga cgcgaggccc taaggcgcgg ccgggggcga ctgtcggcgc
      601 tttccgcgcg cggggctgct gtggtacgct tcagcgcgtc taagaagccc ccgcccagag
      661 aaaagaccgg acagagagga caggccccgc cgagcggcca tgacttggtt taagaagagg
      721 aaccagcgca tcgagcccgt ccccgcggac gagcggcgcg tcaagaccga aggcatcttc
      781 gtcaaatgcc ccgagtgcga cgccgcgctc taccgccgcg agctggaaga gtccttccaa
      841 gtctgctcgc actgcaagca ccacttccgc ctcgacgccc gcacgcgcct cgccatgttc
      901 tacgacgaag gcaagtacga ggagttggac gcggaagtca cctccaccga cccgctcgaa
      961 ttcacggaca ccaagcccta caagcagcgc cttgagcagg cccgccgcgc gacggggctg
     1021 cccgaggccg tcatcaacgg gcgagggcgc gtcggcggcc acctgacctt catcgccgcg
     1081 atggacttca acttcctggg cggctcgatg ggctcggccg tgggcgagaa gattacgcgc
     1141 ctcatcgagc gcgccgttcg agagcgcggc gccgtcgtca tcgtcagcca gtctggcggc
     1201 gcgcgcatgc aggaggggac gctcagcctg atgcagatgg cgaaaatctc cgctgcgctc
     1261 gcgctcctcg acgaagcgcg cctcccctac atctccgtga tgacagaccc gaccacgggc
     1321 ggcgtcaccg ccagcttcgc catgctcggc gacataaaca tagccgagcc caaagcgctc
     1381 ataggcttcg ccggcccccg cgtcatcgag cagaccatac ggcagaagct ccccaaagac
     1441 ttccagacct ccgagttcct cgtcgagcac ggcatgctcg acgccgtcat tgaccgccga
     1501 gagatgcgcg ccttcctgat acgcgccctc gacttcatga tgaacccgga agcgcagttc
     1561 aagcccgtcc gcgcgcgcct gccgctcggc aacggcgcgg gcgccccgcc cgagcttcag
     1621 caggaagagg ctccccccac taagctcaaa gttcagagtt agcggtcatg gacttcggcg
     1681 agtcggtcgc ttacctgctc ggcctcggcc acgagaccgc ggcgatgaag ctcgggctcg
     1741 aaggcatcgg ccgtctgctc gcgcggctcg gcgacccgca taaagttttc acctcggtgc
     1801 aaatcgccgg gacgaacggc aagggctcca ccgccgcgat gctcgaagcc gtctgcctcg
     1861 ccgcgggcct ccgcgccggg ctctacacct cgcctcacct cgtctcaatt acggagcgcg
     1921 tgcgcgtcgg gggccgcgag gtcgcgcccg aagagttcgc gcgcgccgcc tctcgcgtgc
     1981 gcgaagcggc agaggcgttg gagagggagg gcggcgcgct cccgaccttc ttcgagcagg
     2041 tgacggccat cgccctcacg cacttccgcg aggccggcgt ggagcttgcg atattggaga
     2101 cgggcctggg cggtcgcctc gacgccacga ccgccgcggg cgcttccgtc gtcgccgtca
     2161 cgcccgtcgc gctcgaccac caggagcacc tgggccacac gctcgcggag atagccgcag
     2221 agaaggccgc catcatccgt cccggcgtcg aggcggtcgt cgcgccgcag gagccggagg
     2281 ctgccggagt catcgagcgc cgctgccgcg actgcggcgt gcgcccgcgg cgcgcagaac
     2341 cgttcgaggc cgagggcgcg tgcggcgacg gccgcctccg cgggcgcgtg cgaaccgagc
     2401 ggcgcgaata cgggagcgcg tgcctcgcgc ttcgcggccg gcaccagctc gtcaacgcgg
     2461 ccgcggcggt cgcgctcgcc gaggcgctca ttgacgcggg cttttacgtc gcgccggagc
     2521 acgtcttggc cggccttgaa acggccgagc acgccgggcg cttggagatt gaccgcggcc
     2581 acggcgagcc cgccatgctc ttcgacggcg cgcacaaccc ctcgggcgcg cgcgccctgc
     2641 gcgactacct ggacgagttc gccgcgggcc gtgtcacgat ggtcttcggc gcgatgcgcg
     2701 acaaggcgct cgccgagatc ggcgcgatcc tcttcccggc ggccgagcac ctcgtcctga
     2761 cgcagccgcg caacccgcgc gccgccccgg tcgaagagct gctccgggcc gtgccggcgc
     2821 cggcccattc gagtacaatc gcgctcgcgc cgtcgagcgc cgacgcgtta acaatcgcgc
     2881 gcgcgcacac gccgcccgac ggtctcgtct gcgtgacggg gtcgctctac ctcgtcggcg
     2941 aagtcaaggc cgcgctcgcg ggcgcgggga gtttacgcgg atgagcgtta gtcgtgaatc
     3001 gaggcgactg ctttgggtct cggtcggcgt cgccttggtc ggcgccctgg tgctcctgcc
     3061 gctcgcgtgg ctggcgacca ggatgtacca ggaagcgggc cagcggcgcg tcgcggccgc
     3121 caacgaggcc gcggccatcg ccgccttgga gagcatctcg gccgccgagc acctctactt
     3181 ccagtccaaa ggcgagtacg gcactttccc gcagctagtc gagtcgggct tcttccaggc
     3241 gccgctcacg ggcgaggggc tggtcgcgag cggctacgcc ttcacgctca gggtgacccc
     3301 gcgctcggcc gagcgcgcgc ccttctacag cgtcaacgca gaccctctga agtcgggcgg
     3361 gcgcgacgcc acgggccgcc ggcacttcta cattgactcg gacataaccg gcatgcgcta
     3421 caacgaggag cgcccggccg gcccctccga caaggcgcgg cagaccgtgc agcagccgta
     3481 gtctcatgac cgactcgaac gacgggccgc ccgaggttct ggcgacggag gagatttacc
     3541 gcggccgcat attcgacgtg gccgttgaca ccgtgcgcga gggcgcgcgc acgtacacgc
     3601 gcgaggtcgt gcgccacaac ggcggggccg ccgccgtcgc ctgcttcgac gacgggacgg
     3661 tggcgctcgt ccggcagtac cggcacccgg cgggccgcta cgtgctggag ctgccggccg
     3721 gcaagctcga agagggcgag ccgcccgcag tctgcgccgc gcgcgagctc gaggaggagg
     3781 tcggcgccgt gccggggcgc atggagctgc tctccgagtt cttcaccacg cccggcttct
     3841 gcggcgagaa gatctgggtc ttcctcgcca ccgaactgac cgagacggcc ccgacgcacg
     3901 aggaggacga gctgatagaa gtcgtgcggc tgcccgtcgg ccgcgccgtc gagatgatag
     3961 gctcccgcga gatcgaagac gccaagaccg tcatcggcct gctcctcgcc gcccgccgca
     4021 tcggcgcccg agccggcggg gcggctgagc cgtaagcccc ggctacgcga acttgagata
     4081 tctgacgttg ttcagagcag tggcgggata actctccccg ggcacgtcgc cgtaagacaa
     4141 gtgccaaggc gacctcttcg cgagcagcgc cccggccgcc tcgccgctca ccggcttcga
     4201 gtacaggtag ccctgcgcgt aatcgcattc cagcgccctg agctgttccg actggtcgag
     4261 ggtttccacg ccttcggcga ccacctccat ccccaagttg cgcgcgagcg tgacgatcgt
     4321 ccgcacgatc tcagccttct cgacgcccgg gcccatgcgg cccacgaagg agcggtctat
     4381 ctttaaggtg ttaatcggga accggtgcag gtagctcagg gaggagtagc ccgtgccgaa
     4441 gtcgtcaatg ctcacgcggg cgccgatcgc cctcagggct tcgagcatcg ctaccgcgct
     4501 ctctgcgcta tccatcagca cgctttcggt aatctccagt tgcaggcagc gagggtcgaa
     4561 atcggtctcc cggagcacgt cctcgacgtg ctcgaccagg tctggctgca tgaactgttt
     4621 gcccgagagg ttcacgctca gggtgagcgc cctatgcatc ggcgaacggc cctgccattc
     4681 tcgcacctgg cggcacgcct cgcgcagcac ccacaggccg aggggcagaa tcagccccgt
     4741 ctcttccgcc atggggatga aatcgccggg cggcaccatg ccgcgctctg ggtgctgcca
     4801 gcgcaccagt gcctcgaacc cgctgatccg gccggtcgtc agcgaaacga cgggctggta
     4861 gtgcacgcgg agttcttcac gctcgagcgc gcggcgcaag tcgttctcca tctgcatgag
     4921 cgtgacggcg cgcgtgtaca tggacgcggc gaacacctcg tggcaggcct tacccttatc
     4981 cttggcccgg tacatggcga tgtctgcgtc gcgcaggatg tcttccgggg actcgtaccc
     5041 aacgccgccc agcgcgatgc cgacgctggt ggttgtgaag acttcgtggc cgcgcaggct
     5101 gaagggggcc gagagcgcct cctggatgcg ctcggccgtg ccggtcgcgt cgccgacccc
     5161 ggagatgccg tcgagcagga tcgcgaactc gtcgccgccg agccgagcca ccatgtccgc
     5221 cggccgcagg cccgcctcca gccggcgggc gatagcgacg agcagctcgt cgcctaccgt
     5281 gtgcccgagg ctgtcgttga cgttcttgaa gcggtcgagg tcgaggaaca gcaccgcgaa
     5341 atgataaccg gcgcaccggt gcgcgcgttc gagcgccagc cgcaggttat ccgtgatcaa
     5401 catccggtta ggcaggcccg tcagggcgtc gtggaaggcc gcgtgccgga aatggtcttt
     5461 gctctccttg agggcctggc tgatccgctc ctgctccgcg atgtagtgcg aaagctcttc
     5521 gatgtgccgg cgcgcctgtt cggcctgcgc ggcagaggcc tctgcctctg ccgcggcggc
     5581 ggcttcggcc ttggccgcgg ccgccatcac ttcgatgttt ttcaggtaag tccggtaggt
     5641 caagtagagg atgccgatga tcggagtcga gaccatcacg gccgagaagc cgaccgccgc
     5701 gatgagcttg acgatcagat aggccgcggg cgccccggcg aggtacgtga tggaagacca
     5761 gaggcagtat ttgctccacg tgtgccagac cgactcgccc atcttgcagg cctgcacggc
     5821 cgcggccagc ccggtgttga ccacgtactg caccagcgcc atgacgcaga gggcgctgac
     5881 gtaggtggcg ggcacggagc tgtgcggcag gtttatgatg ggcccgaagc aggagcgcag
     5941 cgcccagacg gtaaggaaag tggacgctgc catcacgccc ccgttgagca agaggttggc
     6001 gggcttcttc accatcctca ccgaggcgca gaccccttcc gccgccgcca gcaggaccgc
     6061 ggcctcgccg ccgtagagca gcatcgtgag gaagatgaag gtctccgaga tcgtaatccg
     6121 cccgttgacg ctcggcatcc gtaccgtgat gcgcgaggcg acggtgacgg tcaggatggt
     6181 caggaacagg aagcgcgtgt ctagcgcctc cgccttcaag ttcagggcgg agaccacgca
     6241 gatcaccgcg ccggccccga tgatcagcca cctcagtggg ttgtagagta gctgcctgtt
     6301 catggctttg cccgagaggg tgagaagtca gagcgccttg caagcgacag gtcagagcgg
     6361 ctttagtggc tccgctggag gtagagtgct tcgtaatatc cggtgaggct gaagccggac
     6421 ttttcgtaga aggcgtgcgc ccgcttgttc tgctcgttaa ccagcaggca gagcgacctg
     6481 gtgcgcgccg cgaagtggcg gcccagttgt gcgacgcagc gccggccgaa gcccttgccg
     6541 cgcgcctccg ggctgacgta cacgccttcg aggtagaccg tctcgggtgt ctcggccatc
     6601 acgtcggctt taaatatcag ccgcccgcgc ctgaaccaca cccacacgcg cccctgttcg
     6661 atgcgccgcg cgcagcgctg ccggaagccg tcggggtcgc tcgcgagcgg gttcacgccc
     6721 ttctcctcgt agagcatcag cgcctgcgcc tccatcacct gtggcagttc ggcgagcgtg
     6781 gcccgccgca agcccggcac cgcctcgccc gccgcggcgg gctcgcgcag ctcgaagagc
     6841 agcttgcggc tcgccaggtc tgcggccctg ccggcggggg cgtagtgatg ccagaaacgc
     6901 tccacgctct cggggtcgcc cgcgatcacg tccgcgaacg ggtgcgcctt tgcgcaccgc
     6961 gcgaaggccg ccagcgcctc ctcactctgc gtttcgacca gtgtgaagtg gccgatcagg
     7021 gcgacgccga ccaaccgccc ctgcgcgtcc ctgcaggcgt agaaggtgcc gcggttgagg
     7081 gggctctcga agccgttgtc gcggatgagg ccggccatga agaaggtctg gcggtagcgc
     7141 tcggcgagga aggcgaggac ttccggctcg tcacccttgt ctttcagggc gtgaatggtc
     7201 aaagagctgt cggtcgcgga aggtagcggg gtctcacccc gttcgaatgg gcgaagcctt
     7261 gtcagaaggg ccatggtgat gctccttgga gtctgtagat gggttgacca taagctaagt
     7321 cgaggcaatc tgcgtcagta gcctaagaag tcaaaacctg tatctaccga caccgccatc
     7381 gaagcggtgc catcaccatt agccgtcgcg gactgcgcca ttaagatggc ggtgttgagc
     7441 gcggcgctgt cgccgaagag caccccatcg ccgaagagga cgccatctcc gaagagtacc
     7501 ccgtcgccga ataagacccc atcgccgaag aggacgccgt cgccaaagag cacgccgtcg
     7561 ccaaagagta cgccgaccgg aagtaagggc tgaccgtccc cgaagaggac gccatcgcca
     7621 ttcataatct tgtcgccgaa gagcacccca tccccgaaga ggacgccgtc gccgaaaagc
     7681 acgccatcgc cgaacagtac cccgtcgccg aacagcacgc ccgtgccgta ggccttctga
     7741 taccgatcga tcaggttgaa gcccgttgcg taagttctac cggcgatgat gccctgcgcc
     7801 cacgggaagg tgtggccggc gatagtcgtc tgctgcgccg ggggcagaag tgatgtcagc
     7861 agcggcgccc ccaggggcgt gctgttagta aggtcggtgc gcaccagcct cgccaagcgg
     7921 actgcgccct cgatgttgag ctggcccgcg ccctgctcga acacgttgaa gccgggcagc
     7981 cgctgcgccg tgtacatgag gatcatttta accatgttcg gcgtcagccg cgggttggct
     8041 tgcagcatca gcgccgcggc acccgccgcg acgggtgcgg acatggacgt gccgttcatg
     8101 aacatcatgt tgcgcacgga cacggggctc acggaagcgt ccatctgcgg gttctgcgtg
     8161 accagcaggt tgttccgggc ctgcgcgtag accagcttat tgcccggggc taccagctct
     8221 ggcttgatct ggttgtcgta gtgcttgcgg ccgtcggtgt cggtccagaa gctgcgcgtc
     8281 ggcccgcggg agctgtaggt ggtgacatgg tcgtcgccgc gcgcgttggt gccgaaggtg
     8341 ttggtcgcgc cgacggtgag cgccgaaggt tcgttgcccg gcgagtggac ttggccgtaa
     8401 acctttctgc cggcaccgtc cttgccgttg ttccccgcgg ccgcgacgac caccacgccg
     8461 gcgtcaacca agcggcgcac ggcgcggcac atcgggtcgt tgcggtagga gtccacggcc
     8521 agcgtgccga ggctcatgtt gacgactcgg atgttgtagg cagcgcggtt ggtcatcacc
     8581 cagtcgagcg cgcctaggac gttggcgacc gagcccgcgc cctgcgagcc cagcacgcgc
     8641 aggttgatga tgttggcgtt cggcgcgatg ccgatgtagt tggcgttcga gatgcgcccg
     8701 ttgccggcca cggtggaggc gacgtgcgtg ccgtggccat aggggtcgtc cgtgcgcccc
     8761 tcgcccgtga agtcgtggct gacgacgacg cgcacgttgt tgctcttgtc gaggaaagag
     8821 gtgtgcgcgc tgtccatgcc ggaatcgagc acggcgatgc cgatgcccgt cccgtccaag
     8881 cccaggacgt tgataccgct ggtcgtgcgc gccgcatccg ccccagaggt cgcggagacg
     8941 tgaccgaggg agcggacgct cttgttcagc gtgacggaga cgatctcact gtaggacttc
     9001 aaagcctcga cggtgccggc cggcaggtca acggctatcg agttgaagtt gctgaagcgc
     9061 cccttcacgc gcacgccagc actttcgagc agaccgttga gcggcccgct ggccggcccg
     9121 ttcagttgca ggatcacgct caccgtctcg gcgcccgtac cggcttggcg cacgcgctcc
     9181 tgaacgggcg tggtcacact gtcggcctgt gctgaagcct gtgaggattg tgccttggcg
     9241 ttgtcgtata ccgaaacgcc cgcgatcata gagaccagca gcgagaaggt tgtcagcgat
     9301 gcgaagaggg gggaacgatt gggggtcttc attttttaac tcctagagca agtgagagtg
     9361 agtgtctctc cgtcatgcgc acgcttgcgc caaccccact tgagcaagac ccgtgccacg
     9421 cacctgaagt tggataatca gacacgacaa gggaaagtat ggcgattgat tgtctaaatc
     9481 ttcgctaaaa ttgatttcgg ttatgtcaga agaaagcaac ttgaattgtt ttggttaatt
     9541 tgactgagta ctgtcaaaat gaaggagaat gagttgctgg tgacgagtag ttctgaggtg
     9601 acggcagaag cccgcgataa cccacgcacg cccgagccgc ggcggccgac cctcgttaac
     9661 tacctccact cggccgccgc catcccgctc atatacatct acaccgtcgt catggcgacg
     9721 ctctcgctcc tcgtctctct ctgggacccg gagggccgaa ggcagcactg gtgcgcgtcc
     9781 gcctggagcc gcatgatcgc gcgcacggtc ggcgcgcgcg tgcgcgtcgt cggcgccgag
     9841 cacatagagc ccggcgcgtc ttacgtcttc ctctcgacgc accagagcta catggacata
     9901 cctgtcatgc tcggctacct gccggcgcag ttgcgcatcg cggccaagcg cgaggtattc
     9961 cgaatcccct tcctcgggtg gcacatgcga cgcgcaggcc acatctcaat taaccgcggc
    10021 tccacgacag aagccgtcga gagcctgcgg cgcgcggcct cagaggtgcg ccccggcgtc
    10081 tccgtcttcc tatacccgga aggcacgcgc tcgcgcgacg gccgccttca gcccttcaag
    10141 aagggcggct tcaagttcgc gcttcagacg ggcctgcccg tcgtcccggt cgccatcgtc
    10201 ggcacgcgcg cccttctccc gcgcgactca attgtcttcc gccccggccc cgtcgagctt
    10261 cgagtctcgc cgccgatact caccagcggc ctcgccgact cagaccttcc cggcctcatg
    10321 cagtgcaccc gcgccgtgat ggagggccac ttctcgggcg cgcccgccgg ggggtcttga
    10381 caactttcgg cgcccaggaa tatcgttcgc gcgccctggc atcgtcgggg agcggcctcg
    10441 cttaatcttc acgaggggaa ccaaccagtc ggccggcggc cgcgcctctg cgcagaggcg
    10501 cggcgcgacg cgtgcctgaa gaagctcgag gacggaggtg acgcgatgac gggaaagaaa
    10561 aagcgacgcg acgagccggg ggaggccatc gagaccgcgc tggccgagat tcgggcgagc
    10621 ctcgcgggcc tcgccgagca gttcggcgcg ggcggcgcgc agcaccgcct cgggacgccc
    10681 gtcgccttcc agccggtgtt cctcccggcg atggcccccg gcgagcccgc gccgacacag
    10741 aacatcccgc tcggcg
//
LOCUS       DASPKR010000009        11858 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_130376, whole genome shotgun sequence.
ACCESSION   DASPKR010000009 DASPKR010000000
VERSION     DASPKR010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11858)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11858
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130376"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..1168
                     /locus_tag="VD968_00200"
     CDS             92..1168
                     /locus_tag="VD968_00200"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HYE12846.1"
                     /translation="MEAENIERAQFVVMTGHTDEQPLAEIIGRLRVQRKTGRLRVEYD
                     GGPASFFFEDGQLIDAEMGSMRGVEAAYAALSLGGAPFNFNPLVRPPERSIARHEQQF
                     IRDLVEGRAREGRAEIRVAGADASQAIERAQAGAVEQQQQQLAPVPAEMLAPIEERLV
                     AVEGAIVSASRRFSRERLAYAVVIGFLTGLAVIMTLNSLLGPFFSDSAQPAAAVAPAP
                     PARPATAAAPETSAPEQQQSAGGAPVPATAAVIGTRREGGVPSARREHVVQVLVEVRD
                     GRVVDARVWNPRPGAGAYEQVALGMARERRYPDGFTGGERVKIRVVLPDKSETSGVET
                     PPDHSGVRRFSGTSRGRRPVRVNP"
     gene            1181..2635
                     /locus_tag="VD968_00205"
     CDS             1181..2635
                     /locus_tag="VD968_00205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12847.1"
                     /translation="MLFIRANSLPLALDEGERLRLLDELASATSLTPLLRSSRRRLFR
                     SLAPRGLDGEAASHAADEIERACASRPAPEGATGYTPGDLFFEADCALSLTFGEEQLS
                     ASVIYSLDTSGPLARLERFCRDVREALAKVRGEDEGGAGASQTAARAEWRPRSGAPAQ
                     GLARFIAGQPADFVRAAAALRGGRELTRASELMEEPEVRAFLRRVQEMRSEGYTPRRL
                     FAEAGTAPLQRMIEAGLLEREVRVSCRKSGHALFDLPTPDSLAAVTISRAKCSLCASP
                     VADERIEETINPSRLAVSLLEDGRWLSNRVYKVVRSLGVPDSEIASGPSTSHGESSLA
                     ADVCGNSFLFVTRDGDLTPAFCRRAAEAVEETEATHLVVVVTGSVEDEGRLRLYEFAW
                     RRARAGQDLSATIVEGLASLRAEVERAFSQAVNRELSRSLFPLDPALGFSAASFVLNW
                     FRLTRRQADRKAAGQSAEGAPAPLFPQLDRPLAS"
     gene            2868..3281
                     /locus_tag="VD968_00210"
     CDS             2868..3281
                     /locus_tag="VD968_00210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12848.1"
                     /translation="MDRPGDGDEGDLMARVMICDDDRAAAERLVAALRAAGHEAECCR
                     HTMDVLRAAADGRFDLIAVGLDMAGFGRSGALEALREIAPGTSLIAIHDRPAEIMRSA
                     THARLAAVLPRPVRVKDFMYAVACALKEPAAADLA"
     gene            3390..3911
                     /locus_tag="VD968_00215"
     CDS             3390..3911
                     /locus_tag="VD968_00215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12849.1"
                     /translation="MIKLSKRTGLLPALALALAVTGGAAAFAQRQLTGAAGAKPEVKV
                     SLTGSVTRGGKALSLGEVEGVKPGEVLDWQIVSTNEGGAAARDYKAVGHIPRGTVFVA
                     GSASAEGSTVTFSIDGGKTYSTLPVIEERQPDGTVKQVPAPVSMYTEVRYEWSDALAA
                     GGKLAASYKVRVR"
     gene            4033..6195
                     /locus_tag="VD968_00220"
     CDS             4033..6195
                     /locus_tag="VD968_00220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12850.1"
                     /translation="MRTRTTTPTLPRTLAAALLAAALACLVSLPAAAQQTAGGTTISN
                     TATATYEDPGGTPYETSSNTVVVTVANVSGLAVTPDDASGGGASGTVVAGEANGVMTF
                     VVSNTGNFADTVSFKGGGASFTVGGAITAANVTAAFFDANSNNVFDAGDTDLWSGPDM
                     TTASVPAGESRNVIVRFTVPAGATGTVDIQLGDAGGASPFDNQALSASAADVANTTAG
                     VNGRSEARGSRSLSVLSDARIQTYLTAPAGPINPGGDVNYVVHTCNVSASQAASATTL
                     TNVSNGSNSGVFEILPIPAQTALKAGQTFPAGTLYSTSALTDDPVTTAQWDGNAPANL
                     ANVRRIALNRGASLAGGACTSDVTVLVVIDANADADLPVLGIADSFANNTFGARITDQ
                     SADNVSGFGNGRADLSPAGSNPDGSNLSQPGNLDGDGVLLLTLIAKVGSVFNGPNGAP
                     RATGTAGNTNNDFTNRSVNTGIAGVAPGGSTTAAGASTFTNTVENPGNADDVFTLSVV
                     NFASLPAGTSLVITTANGSVTVDGANPSGSVTINVARGATANYTVQFNLPSGQTVLTG
                     YEAVIRATSTNTPSATNDTIDRLYTGFLRLVKSVTVDNATGVGGATDAVPGAHLVYAI
                     QYENVSLAQGTGSGSVTLTASNVVISEKGDEGSNNWATHTTQVVGGGQDPTDSTTGVI
                     TDGNSGLGVTAATNWLKDTIPSVAPGASGTFTFRRRIN"
     gene            6295..>11858
                     /locus_tag="VD968_00225"
     CDS             6295..>11858
                     /locus_tag="VD968_00225"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12851.1"
                     /translation="MTNARLSRLAAVAVALTLLATPAARSLGAARRDGPAVAGVEISN
                     RAEASYTDPQGLPHTTVSETVVVTVRTVAAVTVTPDETESSANVSPNDRVVRLFRVCN
                     TGNTPDFYSITSAEVSAPAAFVSAHFDSDGDGRLTDADRAITLGQTLSPRLTRGECTG
                     VLVSLDTNQGQTGQLIQIRITAQSSVRDAANIGASDVGTIINTLGDGPKISSPSDPQL
                     PPVKLVGGRASVTTSPGQPLDYLVHFRNSGDTPARSVVVSDDLPAGLEYVAGSLRLND
                     RALTDAEDADEGKAQDNRLRVLIAELAVGEEVRVAFQARVTAGVAHGTGLVNTAVVTP
                     ANAPAASSTTATAVVNPFGLVFQGRSPGTPIPGALVSLLTDPSSGSPLALAPDAGSAP
                     NEPNANPFNSDGQGRWSFVLSPQQIGTSQAPARYFLNVTAAGYRSRLIEVTVTPSPEG
                     ANLFTLAVRALDGQPVARAGGFELTEQAVEITRLAAFAMNVPMFESTTIELTKTADRP
                     SVEVGDVVSYRVEIRNATPVAVDDLVVRDQLPPSFHYAPNTARLEAPPEAPRSVEPES
                     RAAGLLVFRVGRVQAGSRAVLTYRVRVGANVREGDQFNAASATGVLTTGEQVSTPTAR
                     AAVRVRRGIFSSQQVIIGRVFDDANGDSQFDRDEKGVPGVRIYLNNGQSVVTDSEGLY
                     NFPVVNEGAQVLSLDPVTLPPGYALADTGRREDKSWSRLLRTPLGGGALLRQNFALRS
                     HDADAASSVASAGNALAPQDGARKPILAGNLFGGPTTTASPRSAEPKTPPPAAPGTYE
                     VAATETLEPVAPGEVRVLSPQPGETVSGAALEVRARVAAGWAVEVEVEGQRVPDTKIA
                     ERRVDQKNNVATFTFVGVGLKPGPNRVRVTAVGPDGARGATAELTAYGRGPAKRIEIV
                     PDRTEVSTGGRDSTTVRVRAFDQWGHPAADGTVALEVSTGRLMRLDDGKAVKPSSPAD
                     AAGKLEEQAASGQQIITLTGGEASVLFVGEGAPGNAEIRATTGAVEAKQTLRVTPEVR
                     PAILVGLAELTVGAGGPELSTGETAAGIRSRLAFFYRGRLDFMGTNLLTLAYDSNRPI
                     NRTAGHDRLFQFDPLDRAYPLFGDSSTRFEDAPSNSKLYFRLDRGRSYFMFGDIEPEG
                     GSVGLASYTRKLTGAKLHVENSSGDYVSVTGARPDTAYARDVFAGGALGFARLSHTEI
                     LPGSESVTIEVRDRRNPEIILSRETLVRSVDYNLDATLGEIFFLRPVSTFDFNFNLVQ
                     VVVAYEHRASGMSSAVYTGRAFKTFDRLGLKVGLSFVDQRQGEMGAFRMGGVDAEKRM
                     PRGGRLKLEWATSRGRVAVGGNVFTTEGADDRHDGNAYRVELEQPLPYREMMLRASFA
                     RADEGFINPFGATVTPGSQRADASVEMRARKSSRVRLSLTDERNKTSNVDNSRQTASL
                     LWTESFTDRLRVMAGFDFRRFRDETNDKQTDSNLLTVGAEWQATDKLQLSAKREQNLG
                     EADPSYPDQTTLAATYQWNQYTRLFFTQRLASAPIVPISDSALTGFASTGARRETAIG
                     VETRLGRYANLVSRYQLENGIDGTDSFAVIGLANRLSVTKQLALDLGYERGFHLAGKG
                     ESFNAAHLGFSWQPYEDFRTTARYEMRDRGGLGSVFTLGAQGRLGDNWTSMARYQLSR
                     TNFGGRDGQATSMTGALAWRPLRSDAAGLLFSYTRRDLTQEGSGITGGRLRDRSDLLS
                     SDGYYQATRNLELYGRFALKFGDTSSPQLAPASTLTYLTQGRAAYRLGQFIDIAGEGR
                     WLAQPASMTRRASFGTELGFWVLPDLRLGAGYNWAGAYEPFGTSLQPGRRGFYFTISS
                     KLSNLFDLFGTS"
BASE COUNT         1843 a         4575 c         3814 g         1626 t
ORIGIN      
        1 gagtacggcg agtgaagaag tcgttcacgg cggggcgcgg ttggtggtat aagtctcgcg
       61 aacctttctg acgttccttt ctccggcaga catggaagct gaaaacatcg agcgcgcgca
      121 gttcgtggtg atgaccggcc acacggacga gcagcctctg gcggaaatca tcgggcggct
      181 gcgcgtgcag aggaagacgg gcaggctgcg cgtcgagtac gacggcgggc ccgcctcctt
      241 cttcttcgag gacggccaac tcattgacgc cgagatgggc tcgatgcgcg gggtcgaggc
      301 cgcatacgcc gccctctccc tcggcggcgc gcccttcaac ttcaacccgc tcgtgcgccc
      361 gcccgagcga agcatcgcgc gccacgagca gcagttcata cgcgacctcg tcgagggccg
      421 cgcgcgcgaa gggcgagccg agataagggt cgcgggcgcc gacgcctcac aggcgattga
      481 gcgcgcgcag gcgggcgccg tcgagcagca gcagcaacaa ctcgcgcccg tgccggccga
      541 gatgctcgcg ccaatcgaag agcggcttgt cgccgtcgag ggcgcgatag tctccgcctc
      601 gcgccgcttc tcgcgcgagc ggctcgccta cgccgtcgtc ataggcttcc tcacggggct
      661 cgccgtcata atgacgctca actcactctt aggcccgttc ttctcagact ccgcgcagcc
      721 ggcggcggcg gtggcccccg ctccgcccgc gcggcccgcg acggccgccg cccccgagac
      781 ttcggcgccc gagcagcagc aatcggccgg gggcgcgccc gtcccggcaa ccgccgccgt
      841 gataggcacg cgcagggagg gcggagtccc gtccgcgcgg cgcgagcacg tcgtgcaggt
      901 gctggtggaa gtcagggacg gccgcgtcgt tgacgcgcgc gtctggaacc cccggcccgg
      961 cgcgggcgct tacgaacagg tcgcgctcgg gatggcgcgc gagcgccgct accccgatgg
     1021 cttcacgggc ggcgagcggg tgaagataag agtggtactg cccgacaagt ctgaaacctc
     1081 cggcgtggag acgccccccg accattcggg cgtgagacgc ttctcaggga cttcccgcgg
     1141 caggcggccc gttcgggtga acccttagag acttccgccg atgctcttca tccgagccaa
     1201 cagtctgccg ctcgccctcg acgagggaga gcgactgcgc ctgctcgacg agttggcctc
     1261 ggcgacgagc ctcacgccgc tactgcgctc gtcgcgacgc cgcctcttcc gctcgctcgc
     1321 gccgagaggt ctggacggcg aggccgcgtc gcacgcggcc gacgagattg agcgcgcgtg
     1381 cgcctcgcgc cccgcgccgg aaggcgcgac cggctacacg cccggcgacc tcttcttcga
     1441 ggccgactgc gccctctccc tcacgttcgg cgaagaacag ctcagcgcct ccgtcatcta
     1501 cagcctcgac acttcggggc cgctcgcccg cctcgaacgc ttctgccggg acgtgcgcga
     1561 ggcgctggcg aaagtcaggg gcgaagacga aggcggggcg ggcgcgagtc agacggccgc
     1621 tcgcgccgag tggcgcccgc gctcgggggc gcccgcgcag gggctcgcgc gcttcatcgc
     1681 gggccagccc gcggacttcg tgcgcgcggc tgcggcgctg cgcggggggc gggaactcac
     1741 gcgcgcctcc gagttgatgg aggagccgga ggtgcgcgcc ttccttcgcc gcgtgcagga
     1801 gatgcgcagc gagggctaca cgccgcgccg cctcttcgcc gaagccggca ccgcccccct
     1861 gcagaggatg atcgaagccg ggctccttga gcgcgaggtg cgcgtgagct gccgcaagtc
     1921 gggccacgcc ctcttcgatc tgccgacgcc cgactcgctc gcggccgtca ccatcagccg
     1981 cgccaagtgc agcctgtgcg cctcgcccgt cgccgacgag cgcatagagg agaccatcaa
     2041 cccttcgcgc ctcgccgtct cgctcctcga agacgggcgc tggctctcca accgcgtcta
     2101 taaggtcgtg cgctcgctcg gcgtccccga cagcgagata gcgagcggcc cctcgacctc
     2161 gcacggcgag tcgtcgctag ccgcggacgt gtgcggcaac tccttcctct tcgtcaccag
     2221 agacggcgac cttacgcccg ccttctgccg gcgcgcggcc gaggccgtcg aggagaccga
     2281 ggccacgcac ctcgtcgtcg tcgtcacggg ctcggtcgag gacgaggggc gcctgcggct
     2341 ctacgagttc gcctggcgcc gcgcgcgcgc cgggcaagac ctgagcgcaa cgattgtcga
     2401 ggggctcgcg tcgctccgcg cggaggtgga gcgcgccttc tctcaggccg tcaaccgaga
     2461 actgtcgcgc agcctcttcc ccctagaccc ggccctcggc ttcagcgccg cctccttcgt
     2521 cctcaactgg ttcaggctca cgcgccggca ggccgacaga aaggccgccg gccagtctgc
     2581 cgaaggcgcc cccgcccctc tcttcccgca gctcgaccgc ccgctcgcat cctgacttcg
     2641 gcccgcacgc ggccgcggcc cccggctgac gttttgtcag ccgcgctgac agattttccg
     2701 gccgcagtgt caacgcgcgc ccgcgcactc tctcaccaac ccgccgcctc ttaaacggca
     2761 aagctttgtg gccgcaaccg tttgcgccgc ccgcggggag cccgcgcgtg agcggcacag
     2821 actttgttat tgctcctcgg gccgggggcg cgtgcgccgc ccggcgattg gacagaccgg
     2881 gcgacggcga cgaaggggac ttgatggctc gcgtgatgat ttgcgacgac gaccgtgcgg
     2941 cggccgagcg gcttgtggcc gctctgcgtg ccgccggcca cgaggccgag tgctgccgcc
     3001 acacgatgga cgtgctgcgc gcggccgccg acgggcgctt cgacctgata gccgtcggcc
     3061 tggacatggc gggcttcggc cgcagcggcg ccctcgaggc gctgcgcgag atagctcccg
     3121 gcacttcgct catagccata cacgaccgcc ccgcagagat aatgcgctcg gccacgcacg
     3181 cgcgccttgc ggccgtgctc ccgcgccccg tccgcgtcaa agatttcatg tacgccgtcg
     3241 cgtgcgccct caaagagccc gcggcggcag acctcgcctg aagcgacttg gggctccccg
     3301 caagcgcccc gccatccttc aactcacgcg cgccgcgcgc ctttccgccc gacccacccg
     3361 atgaagacaa cgaatggagg agaagacaga tgatcaagtt aagtaaacgc acgggcctgc
     3421 tccccgcgct ggctctcgcc ctcgccgtga cgggcggggc cgcggccttc gcccagcggc
     3481 agctcacggg cgcggcgggc gcgaagcccg aagtcaaggt gagcctcacc ggcagcgtca
     3541 cgcgcggggg caaggccctc tcgctcggcg aggtcgaggg cgtcaagccc ggcgaggtgc
     3601 tcgattggca aatcgtctcg acgaacgagg gcggcgccgc cgcgcgcgac tacaaggcgg
     3661 tgggccacat cccgaggggg acggtcttcg tcgccggaag cgccagcgcc gagggctcga
     3721 ccgtaacctt cagcattgac ggcggcaaga cctactcgac cctgcccgtc atcgaggaga
     3781 ggcagccgga cggcacagtc aagcaggtgc cggcgcccgt ctcgatgtac acggaagttc
     3841 gctacgagtg gtcggacgcg ctggccgcgg gcggcaagct cgcagcctct tacaaggtgc
     3901 gcgtccggta ggagggagtc cgggcgcaca gcctgcggcc gcgccttgaa cacccgccgg
     3961 ggacggccac cccatccccg ccgcgagccg cgagcgcccc acaccaccgg ccaccgatga
     4021 ggaactaaaa agatgagaac cagaaccact acccccacgc ttccccgcac gctcgccgcg
     4081 gcgcttctgg ccgccgcgct cgcgtgcctc gtgtcgctgc ccgcagcggc gcagcagacc
     4141 gccggcggca cgaccatcag caacaccgcc acggccacct acgaggaccc gggcggcacg
     4201 ccctacgaga cctcctcgaa caccgtcgtc gtcactgtgg cgaacgtctc gggcctcgcc
     4261 gtcacgcccg acgacgcatc gggcggcggc gccagcggca ccgtcgtcgc gggcgaggcc
     4321 aacggcgtga tgaccttcgt cgtctcgaac accggcaact tcgccgacac cgtcagcttc
     4381 aagggcggcg gggcgagctt cacggtcggc ggcgctatca cggccgccaa cgtcacggcc
     4441 gccttcttcg acgccaactc caacaacgtc ttcgacgcgg gcgacaccga cctgtggagc
     4501 ggccccgaca tgacgaccgc ctccgtcccc gcgggcgaga gccgcaacgt catcgtccgc
     4561 ttcaccgtcc ccgcgggcgc gaccggcacc gttgacatac agctcggcga cgcgggcggc
     4621 gcatcgccct tcgacaacca ggcgctctcg gcctccgcgg ccgacgtcgc gaacacgacg
     4681 gccggcgtca acggccgatc cgaggcgcgc ggctcccgaa gcctctccgt gctctccgac
     4741 gcgcgcatcc agacttacct gacggcgccc gccggcccca tcaaccccgg cggcgacgtg
     4801 aactacgtcg tccacacctg caacgtgtcg gcctcgcagg cggcctcggc cacgacgctc
     4861 acgaacgtct cgaacggctc gaactcgggc gtcttcgaaa tactgcccat ccccgcgcag
     4921 accgcgctca aggccgggca gaccttcccg gccggcacgc tctactcgac gagcgcgctc
     4981 accgacgacc ccgtgacgac ggcccagtgg gacggcaacg ccccggcaaa cctcgcgaac
     5041 gtccgccgca tagccttgaa ccgcggcgcg agcctcgcgg gcggcgcctg cacctccgac
     5101 gtgacggtgc tcgtcgtcat tgacgcgaac gccgacgccg acctgcccgt gctcggcata
     5161 gccgactcgt tcgccaacaa caccttcggc gcgcgcatca ccgaccagtc tgccgacaac
     5221 gtctccggct tcggcaacgg ccgcgccgat ctttcgcccg ccggcagcaa ccccgacggc
     5281 tcgaacctct cgcagcccgg caacctcgac ggcgacggcg tgctgctgct gactctgata
     5341 gccaaggtcg gctccgtctt caacggcccc aacggcgccc cgcgcgccac gggtacggcc
     5401 ggcaacacca acaacgactt cacgaaccgt agcgtcaaca ccggcatcgc cggcgtcgcc
     5461 cccggcggct cgaccacggc cgcgggcgcc tcgaccttta ccaacacggt cgagaacccc
     5521 ggcaacgccg acgacgtgtt cacgctgtcg gtcgtcaact tcgcgtcgct ccccgccgga
     5581 acgtcgctcg tcatcacgac ggccaacggc tccgtcacgg ttgacggcgc gaacccctcg
     5641 ggcagcgtga ccatcaacgt cgcccgcggc gcgacggcca actacaccgt gcagttcaac
     5701 ctgccctcgg gccagaccgt gctcacgggc tacgaggccg tcatacgcgc cacgtccacg
     5761 aacacgccct cggccacgaa cgacacgatt gaccggctct acacgggctt cctgcggctg
     5821 gtcaagtccg tcaccgtgga caacgcgacc ggcgtgggcg gcgcgaccga cgccgtgccg
     5881 ggcgcgcacc tcgtctatgc catccagtac gagaacgtct cgctcgcgca ggggacgggc
     5941 tcgggcagcg tgaccctgac ggcctcgaac gtcgtcatca gcgagaaggg cgacgagggc
     6001 tcgaacaact gggccacgca cacgacgcag gtcgtcggcg gcgggcaaga cccgaccgac
     6061 agcacgaccg gcgtcatcac cgacggcaac tccggcctcg gcgtcaccgc cgcgaccaac
     6121 tggctgaagg acaccatccc gagcgtcgcc cccggcgcct ccggcacgtt caccttcagg
     6181 cgccggatca actaaaggca gatgtcagat gctagatgcc ggatgtcggc agccgacctc
     6241 tccggcatct agcatctgac acccgatatc tcacacctct tatcagtctt ctccatgact
     6301 aacgcccgtc tcagccgtct cgccgccgtc gctgtcgcac tcacgctcct ggccaccccc
     6361 gcggcccgca gcctgggcgc ggcacggcgc gacgggccgg ccgtggcggg cgtcgaaatt
     6421 tccaaccgcg ccgaggcgag ctacacagac ccgcagggcc tgccgcacac taccgtctcc
     6481 gagacggtcg tcgtcaccgt ccgcacggtc gccgccgtca cggtcacgcc cgacgagaca
     6541 gagtcttccg ctaacgtctc gccgaacgac cgcgtggtgc gcctcttccg tgtgtgcaac
     6601 acgggcaaca cgcccgactt ctactcgata acttcggccg aggtgagcgc cccggccgcc
     6661 ttcgtctccg cccacttcga ctcggacggc gacggccgcc tcaccgacgc cgaccgcgcc
     6721 ataacgctcg ggcagaccct gagcccgcgc ctcacgcgcg gcgagtgcac gggcgtcctc
     6781 gtctctttag acacgaacca ggggcagacc ggccagctca tacagatacg catcacggcg
     6841 cagtcgagcg tgcgggacgc cgccaacata ggcgcttccg atgtcggcac catcatcaac
     6901 acgctcggcg acggcccgaa aatatcttcg ccctcagacc cgcagctccc gcccgtcaag
     6961 ctcgtcgggg ggcgcgcgag cgtcacaacc tcgccgggcc agccgctcga ctacctcgta
     7021 cacttccgca acagcggcga cacgcccgcg cgctccgtcg tcgtgagcga cgacctgccc
     7081 gccggcctcg agtacgtcgc cggctccctg cgcttaaacg accgcgcgct caccgacgcc
     7141 gaggacgccg acgagggcaa ggcccaggac aaccgcctcc gcgtgctcat cgccgagctg
     7201 gccgtgggcg aagaggtgcg cgtcgccttc caggcgcgcg tcacggccgg ggtcgcgcac
     7261 ggcaccgggt tagtcaacac ggccgtcgtc acccccgcga acgcgccggc cgcctcgagc
     7321 acgaccgcca cggccgtcgt caaccccttc gggctggtct tccagggccg cagccccggc
     7381 acgcccatac ccggcgccct cgtctcgctg ctcacagacc cctcctccgg ctcgccgctc
     7441 gcgctcgcgc ccgacgccgg ctccgcgccg aacgagccga acgcgaaccc cttcaactcc
     7501 gacgggcagg gccgctggag cttcgtgctc tcgccgcagc agatcggcac ctcgcaagcg
     7561 cccgcgcgct acttcctgaa cgtgacggcg gcgggctacc gctcgcgcct gatagaagtg
     7621 acggtcacgc cctcgcccga gggagcgaac ctcttcacgc tcgcggtgcg cgccctcgac
     7681 ggccagcccg tcgcgcgcgc cgggggcttc gagctgaccg agcaggccgt agagattacg
     7741 cgcctcgcgg ccttcgcgat gaacgtgccg atgttcgaga gcacgaccat cgagcttaca
     7801 aagacggccg accgcccgtc ggtcgaggtg ggcgacgtgg tgagctaccg cgtcgagatt
     7861 cgcaacgcga cgcccgtcgc ggttgacgac cttgtcgtgc gcgaccagct cccgccgtcc
     7921 ttccactacg cgccgaacac cgcgcgcctc gaggcgccgc ctgaagcgcc gcgcagcgtc
     7981 gagcccgagt cgcgcgccgc cggcctactc gtcttccgcg tcggccgagt gcaggccggc
     8041 tcgcgcgcag tgctcaccta ccgcgtgcgc gtcggcgcca acgtccgcga gggcgaccag
     8101 ttcaacgcgg cctccgcgac gggcgtgctc acgaccggcg agcaagtctc gaccccgacg
     8161 gctcgcgccg ccgtgcgagt gcgccgcggc atcttctcgt cgcagcaggt catcatcggc
     8221 cgcgtgttcg acgacgcgaa cggcgactct cagttcgacc gcgacgagaa gggcgtcccc
     8281 ggcgtccgca tctacctcaa caacggccag tccgtcgtca cggactccga ggggctctac
     8341 aacttccccg tcgtcaacga gggcgcgcag gtgctctcgc tcgaccccgt cacgctcccg
     8401 cccggctacg cgctcgcaga caccggaagg cgcgaagaca agagctggtc tcggctgctc
     8461 cgcacgcccc tgggcggcgg cgcgctcctc cggcagaact tcgcgctccg ctcgcacgac
     8521 gccgacgcgg cctcttcggt cgcttcggcc ggcaacgccc tcgcgcccca ggacggcgcg
     8581 cggaagccca tcctcgccgg caacctcttc ggcggcccga cgacgacggc gtcgccccgt
     8641 tcggccgagc cgaagacgcc cccgcccgcc gcgcccggca catacgaggt ggcggcgacc
     8701 gagacgctag agcccgtcgc ccccggagag gtacgcgtgc tctcgccgca gccgggcgag
     8761 accgtctcgg gcgccgcgct cgaagtcagg gcgcgcgtcg cggccggctg ggccgtcgag
     8821 gtcgaggtcg agggccagcg cgtccccgac acgaagatcg ccgagcgccg cgttgaccag
     8881 aagaacaacg tcgccacctt caccttcgtc ggcgtcggcc tcaagcccgg cccgaaccgc
     8941 gtgcgcgtta cggccgtcgg ccccgacggc gcgcgagggg cgacggccga gcttacggcc
     9001 tacggccgcg gccccgccaa gcgcatcgag atagtgccgg acaggactga ggtctccacg
     9061 ggcgggcgcg attcgaccac ggtgcgcgtg cgcgccttcg accagtgggg ccaccccgcc
     9121 gccgacggca cggtcgcgct cgaagtctct acggggaggc tcatgcggct cgacgacggc
     9181 aaggccgtta agccttcctc gcccgccgac gccgcgggca agctcgaaga gcaggccgct
     9241 tcgggccagc agataatcac gctgactggc ggcgaagcct ccgtgctctt cgtcggcgag
     9301 ggcgcgcccg gcaacgccga gattcgcgcc acgaccggcg ccgtcgaggc caagcagacc
     9361 ttgcgcgtca cccccgaagt gcggcccgcc atactcgtcg gcctcgccga attgacggtc
     9421 ggcgcgggcg gccccgagct ctccacgggc gagaccgccg ctgggatacg cagccgcctc
     9481 gccttcttct accgcggccg gctggacttc atggggacga acctgctgac gctcgcctac
     9541 gacagcaacc gacccatcaa ccgcaccgcg ggccacgacc gcctgttcca gttcgacccg
     9601 ttggatcgcg cctacccgct cttcggcgac tcgtccacgc gcttcgaaga cgcgccgtcg
     9661 aactcgaagc tctacttccg cctagaccgc ggccgctcct acttcatgtt cggcgacatc
     9721 gagcccgagg gcggctcggt gggcctcgcc tcctacacgc gtaagctcac gggcgcgaag
     9781 ctccacgtcg agaactcgtc gggcgactac gtctcggtga cgggcgcccg ccccgacacg
     9841 gcctacgcgc gcgacgtttt cgcgggcggc gcgctaggct tcgcgcgcct ctcgcacacg
     9901 gagattctgc ccggctccga gtccgtcacc atcgaagtcc gcgaccgccg caaccccgag
     9961 ataatcctct cgcgcgagac gctcgtccgc tcggttgact acaacctcga cgcaacgctc
    10021 ggcgagattt tcttcctgcg gcccgtctcg accttcgact tcaacttcaa cctcgtgcag
    10081 gtcgtcgtcg catacgagca ccgcgcgtcg gggatgtcgt cggccgtcta tacgggccgc
    10141 gcgttcaaga ccttcgaccg cctcggcctc aaggtcgggc tctccttcgt tgaccagcgg
    10201 cagggcgaga tgggcgcgtt ccggatgggc ggcgtggacg ccgagaagcg aatgccgcgc
    10261 ggcggccgcc tcaagctcga gtgggcgacc tcgcgcgggc gcgtcgccgt cggcggcaac
    10321 gtcttcacga ccgagggcgc agacgaccgc cacgacggca acgcataccg cgtggaactg
    10381 gagcagccgc tcccctaccg cgagatgatg ctgcgcgcat ccttcgcgcg cgccgacgag
    10441 ggcttcatca accccttcgg cgccacggtg acgccgggct cgcagcgcgc cgacgcgtcc
    10501 gtcgagatgc gcgcgcgcaa gtcgtcgcgc gtgcgcctgt cgctcacgga cgagcgcaac
    10561 aagacctcga acgtggacaa cagccgtcag acggcctcgc tgctctggac ggagagcttt
    10621 acagaccgcc tgcgcgtgat ggcgggcttc gacttccgcc gcttccgcga cgagacgaac
    10681 gacaagcaga ccgactcgaa cctcctgacg gtcggcgccg agtggcaggc gaccgacaag
    10741 ctccagctct ccgcgaagcg cgagcagaac ttgggcgagg ccgacccgtc ctaccccgac
    10801 cagactactc tcgccgccac gtaccagtgg aaccagtaca cgcggctctt cttcacgcag
    10861 cgcctggcca gcgcgcccat cgtccccatc agcgactctg cgctcacggg cttcgcctcc
    10921 acgggcgcgc gccgcgagac ggccatcggc gtggagacac ggctcggccg ctacgcgaac
    10981 ctcgtctcgc gctaccagct agagaacggc attgacggca ccgacagctt cgccgtcatc
    11041 gggttagcca accgcctctc cgtcacgaag cagctcgccc ttgacctcgg ctacgagcgc
    11101 ggcttccacc tcgcgggcaa gggagagagc ttcaacgccg cgcacctcgg cttctcgtgg
    11161 cagccctacg aggacttccg cacgacggcg cgctacgaga tgcgcgaccg cggcggcctc
    11221 ggctccgtct tcacgctcgg cgcgcagggg cgcctcggcg acaactggac gagcatggcc
    11281 cgctaccagc tctcgcgcac gaacttcggg ggcagagacg gccaggcgac gagcatgacg
    11341 ggcgcgctcg catggcggcc gcttagaagc gacgcggccg ggctgctctt cagctacacg
    11401 cgcagggact tgacgcagga gggctccggc atcaccggcg ggcggctccg cgaccgctcc
    11461 gacctgctct cctcggacgg ctactaccag gcgacgcgca acctggagct ctacggccgc
    11521 ttcgccctga agttcggcga cacctcctcg ccgcagctcg cgccggcctc gacgctcacc
    11581 tacctcacgc aggggcgcgc ggcctaccgg ctcggccagt tcatagacat cgcgggcgag
    11641 ggccgctggc tcgctcagcc cgcgagcatg acgcgccgcg cctccttcgg caccgagctc
    11701 ggcttctggg tgctgcccga cctgcgcctc ggcgccggct acaactgggc gggcgcctac
    11761 gagcccttcg gcacgagcct acagccgggc cgccgcggct tctacttcac catctcgtcg
    11821 aagctctcga acctcttcga cctcttcggc acctcgag
//
LOCUS       DASPKR010000010         4194 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1813036, whole genome shotgun sequence.
ACCESSION   DASPKR010000010 DASPKR010000000
VERSION     DASPKR010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4194)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4194
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1813036"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..892)
                     /gene="atpB"
                     /locus_tag="VD968_00230"
     CDS             complement(<1..892)
                     /gene="atpB"
                     /locus_tag="VD968_00230"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HYE12852.1"
                     /translation="MFFLFGDEKQATATSAGHAAEATEHAAESGGHHTPLLVEKLNDA
                     FGPAVHDFQVHYTKPLWDKFFAIFKTNAESVFGPYTPENAIPWYTVMFVLAAVFSVVL
                     VLLLKPRRLSVDEPPNTQLLLESGVLAIRNLLVDNVGHHGLKYLPVVATFGVLILVSN
                     LMGLVPGLMSPTASTSVTFALGITSFVYYNAIGIKENGLFGHLRHFAGPVIWLAPLMF
                     PIELISNLVRPMSLGIRLFGNLFGDEQILGTIFGLVNWVLPVLIMPLSVFVAFMQTFI
                     FVLLSILYISEVSHAHHDDHG"
     gene            complement(893..1336)
                     /locus_tag="VD968_00235"
     CDS             complement(893..1336)
                     /locus_tag="VD968_00235"
                     /inference="COORDINATES: protein motif:HMM:NF015834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HYE12853.1"
                     /translation="MSEGADSVRGRAPGGRDEDPRAMERRIFRGMCVSVALAVLVSAA
                     LAPWRVTTGLLLGGLLSLLNHHWLRTSVAAVFGATPAGRRPRMRAARYVLRYAVVGGA
                     VWAAQALGLVSLGAALAGLCSFVPAALAEGFRQLYFAVLRREETS"
     gene            complement(1389..1601)
                     /locus_tag="VD968_00240"
     CDS             complement(1389..1601)
                     /locus_tag="VD968_00240"
                     /inference="COORDINATES: protein motif:HMM:NF021073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HYE12854.1"
                     /translation="MGEKEDAETTRKSSIAYAAGLSIFFAVLSCMGIGWALDRWLGKN
                     YWMVTGIIVGAVVGFYQFVRLITKIK"
     gene            complement(1633..1893)
                     /locus_tag="VD968_00245"
     CDS             complement(1633..1893)
                     /locus_tag="VD968_00245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12855.1"
                     /translation="MNLLKVLLALAVLALAVFGAFALFGLVAALLKYVILFGLIALVG
                     VGAYRLLSKPSRPEYGELTDADIEMLKTERLLEEMRRKQLMK"
     gene            complement(1994..3115)
                     /locus_tag="VD968_00250"
     CDS             complement(1994..3115)
                     /locus_tag="VD968_00250"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HYE12856.1"
                     /translation="MPNKAAQLYQLLRSTAREKRLGTVIFFITSRCNAKCETCFYHEE
                     LNRPGDMTFEQIERVSRTMPPVTDLWLSGGEPTLRHDASEVINLFVRNNGVRRVIIPT
                     NGLLKGRTREIVGRALGENAGLHLYLNVALDGYGETHDRVRGVPGNWGRTLDCIRALY
                     PLKDEHGDRFRLNVNTVVCAENYTELGRLSEFLWHNFRLDGHYFNIIRGETKAGDSIK
                     QVPERALPAIYAEAAALTKRYGERMFAGDDAATRFVKSVAYVGAITTHYRTQSANFAA
                     PAPWPFPCTAGETTAVVDYNGDVRACELRGKFASLADYDFDFGALWESEGRRAELSEI
                     DGGRACWCTHVCFIHDSMRHSRRAQLWEVPKNYLTRGSW"
     gene            complement(3105..>4194)
                     /locus_tag="VD968_00255"
     CDS             complement(3105..>4194)
                     /locus_tag="VD968_00255"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYE12857.1"
                     /translation="ASLFLQHYPAYELIFVSDDREDTALAVAEEVWKSLRGETVARVS
                     FVAAGRATDTGQKVHNLRAAVAAVSADSEVLVFVDTDARPSPDWLRSLVAPLAGVGVG
                     AATGYRWFLPVGGGLASHLRSVWNASIASALGPEGRRNFCWGGSTAIRRETFERLGVR
                     ERWRGAASDDYALTRALHEAGLPIRFVPACLTPSVEDCTFAELVEFTTRQLKITRVYA
                     PHLWRVVLVSNALFAVAFFGGLALALGRAAAGLTFAWPLFAVFAIFLLGVWKVFFRLR
                     AAALVLEGHHARLRAGVWAHLLLWPLTALLFLYNALAAARSRRIVWRGIAYRLKSPTE
                     TEIISAAPQDEPAAADDAPPVKEATHAQ"
BASE COUNT          737 a         1361 c         1446 g          650 t
ORIGIN      
        1 cgccgtggtc gtcgtggtgc gcgtgcgaca cctcgcttat gtagagtatc gagagcagca
       61 cgaagatgaa ggtctgcatg aaggcgacga agacgctcag gggcattatt aagaccggca
      121 gcacccagtt caccaagccg aagatggtgc cgagaatctg ctcgtcgccg aagaggttcc
      181 cgaacagtcg tatgccgagc gacatcggcc ggacgaggtt gcttatcagc tcgatgggga
      241 acatcagcgg cgcgagccat atgacggggc cggcgaagtg gcgcaggtgg ccgaacagcc
      301 cgttctcctt gatgccgatg gcgttgtaat agacgaacga agtgatgccg agcgcgaacg
      361 tcacgctggt cgaggcggtc ggcgacataa gccccggcac tagccccatc aaattcgata
      421 cgagtatgag cacgccgaac gtggcgacga cgggcaggta cttcaacccg tgatggccca
      481 cgttgtccac gagcaggttc ctgatggcaa gcacgcccga ctcgagcaga agctgcgtgt
      541 tcggcggctc gtcaacagaa agcctgcgcg gcttcaggag cagcacgagc acgaccgaga
      601 agacggccgc gagcacgaac atcaccgtgt accacgggat ggcgttctcg ggcgtgtagg
      661 ggccgaagac cgactcggcg ttcgtcttaa atatggcgaa gaacttgtcc cagagcggct
      721 tggtgtagtg aacctggaag tcgtggacag cggggccgaa cgcgtcgttc aacttctcga
      781 cgagcagggg cgtgtggtga ccgcccgact cggcggcgtg ctcggtggcc tcggccgcgt
      841 ggccggccga ggtggccgtg gcctgctttt cgtcgccgaa cagaaagaac atttacgaag
      901 tctcctcccg acgaaggact gcgaagtata actgcctgaa gccttcagcg agcgccgccg
      961 gcacgaacga gcagaggccc gcgagcgccg cccccagcga gacgagcccg agcgcctgcg
     1021 ccgcccagac cgcccctccc accaccgcgt agcggagcac gtagcgcgcg gccctcatgc
     1081 gcggccttcg gcccgccgga gtcgcgccga agacggccgc gaccgaggtg cgaagccagt
     1141 ggtggttcaa gagcgagagc agaccgccga gcagcagccc cgtcgtcacc ctccacgggg
     1201 cgagcgcggc gctcacgagg acggccagcg cgaccgacac gcacatcccc cggaatatgc
     1261 ggcgctccat cgcacggggg tcttcgtccc ggcctccggg cgcacggccg cgcacactgt
     1321 cggcgccttc actcatctcg tgaacgggtg attttacacg ccggccggcg cggctgtcga
     1381 gcgcgccctc acttgatttt cgttatcagg cggacgaact ggtagaagcc cactaccgcg
     1441 ccgacgatta tccccgttac catccagtaa ttcttgccga gccagcggtc gagcgcccag
     1501 cctatcccca tgcacgagag caccgcgaag aagatagaga gccccgcggc gtacgcgatg
     1561 ctgctcttcc gagtggtctc ggcgtcttcc ttttcgccca ccggcctccc tccccgcaag
     1621 tgctcgcggc acctacttca tcaactgctt ccgcctcatc tcttcgagca gccgctcggt
     1681 cttgagcatc tcgatgtccg cgtcggtcag ctcgccgtat tcgggccgcg aaggcttcga
     1741 caggagcctg taggcgccga cgccgactag ggcgatgagc ccgaaaagta tgacgtactt
     1801 cagcagcgcc gccacgaggc cgaagagcgc gaaggcgccg aagacggcga gcgcgagcac
     1861 cgccagcgcg agcaggactt tcaagagatt cataacggct tacctctcgt cgtaaatttc
     1921 ccgcccccga gacggtgcgg cttcacacag gatttacgct cgcgggcgtc ccgccgttcc
     1981 ctcgcctttc gcctcaccag ctaccgcgcg tcaggtagtt cttcggcacc tcccagagct
     2041 gcgcccggcg ggagtggcgc atcgagtcgt gtatgaagca gacgtgcgtg caccagcacg
     2101 cgcgcccgcc gtcaatctcg gagagttccg cgcgccggcc ttccgactcc cagagcgcgc
     2161 cgaagtcgaa gtcgtagtcc gccagcgacg cgaactttcc gcgcaactcg caggcgcgca
     2221 cgtcgccgtt gtagtcaacg acggccgtcg tctcgcccgc cgtgcagggg aagggccacg
     2281 gcgcgggcgc ggcgaagttg gcgctctgcg tgcggtagtg agtggtgatg gcgccgacgt
     2341 atgcgaccga cttgacgaag cgagtggccg cgtcgtcgcc cgcgaacatg cgctcgccgt
     2401 agcgctttgt gagcgcggcg gcctcggcgt agatggccgg cagcgcacgt tcggggactt
     2461 gcttgatgga gtcgccggcc ttcgtctcgc cgcggatgat gttgaagtag tggccgtcga
     2521 gccggaagtt atgccagagg aattctgaga ggcggccaag ctccgtgtag ttctctgcgc
     2581 agaccacggt gttgacgttc aggcggaagc ggtcgccgtg ctcgtccttg agcgggtaga
     2641 gagcgcggat gcagtcgagc gtgcgccccc agttaccggg gacgccgcgc acgcggtcgt
     2701 gcgtctcgcc gtagccgtcg agcgcgacgt tcaggtatag gtgcagcccc gcgttctcgc
     2761 cgagcgcgcg gccgactatc tcgcgggtgc gccctttgag cagcccgttc gtggggatga
     2821 tgacgcggcg cacgccgttg ttccggacga agaggttgat tacctcggag gcgtcgtggc
     2881 gcagcgtcgg ctcgccgccc gagagccaga ggtctgtgac gggcggcatg gtgcgagaga
     2941 cgcgctcgat ctgctcgaac gtcatgtcgc cgggcctgtt cagctcctcg tggtagaagc
     3001 aggtctcgca cttcgcgttg cagcgcgagg tgatgaagaa gattacggtg ccgagacgct
     3061 tctctcgcgc ggtcgagcgc agcagttggt agagctgtgc ggctttattg ggcatgggtc
     3121 gcttctttca ctggcggcgc gtcgtccgcc gcggccggct cgtcttgcgg ggcggcggag
     3181 atgatctcag tttcggtcgg cgatttcaaa cggtacgcga tgccgcgcca cacgatgcgg
     3241 cgcgagcggg cggccgcgag cgcgttgtag aggaacagca gcgccgtcag gggccaaaga
     3301 agcaggtgcg cccagacgcc cgcgcgcagc cgcgcgtggt ggccttcgag cacgagcgcc
     3361 gcggcgcgca gtcggaagaa gaccttccag acgccgagca gaaagatcgc gaagaccgcg
     3421 aagagcggcc acgcgaatgt gagccccgcc gccgcgcgcc cgagcgcgag ggcgagcccg
     3481 ccgaagaagg cgacggcgaa gagcgcgttc gagacgagca cgacccgcca gaggtgcggc
     3541 gcatagacgc gcgttatctt caactgccgc gtcgtgaact cgaccagctc cgcgaaggtg
     3601 cagtcctcga ccgatggcgt gaggcacgcg gggacgaagc gaatggggag gccggcttca
     3661 tggagggcgc gcgtgagcgc gtagtcgtcg gaggcggccc cgcgccagcg ctcgcgcacg
     3721 ccgaggcgtt cgaacgtctc gcgccttatg gcggtcgagc cgccccagca gaagttccgc
     3781 cgcccttcgg ggccgagcgc cgatgcgatg gacgcgttcc agaccgagcg caggtgcgag
     3841 gcgaggccgc cccctacagg gaggaaccag cggtagccgg tcgcggcgcc gacgccgacg
     3901 cccgcgagcg gcgcgacgag cgagcgcagc cagtcgggcg agggccgcgc gtcggtgtca
     3961 acgaagacga gaacctcgct gtcggcgctc acggctgcga cggctgcgcg caggttgtga
     4021 actttctgcc ccgtgtcggt cgcgcggccc gccgcgacga acgagacgcg cgcgaccgtt
     4081 tcgccccgca aactcttcca gacctcctcg gcgacggcca gcgccgtgtc ctcgcggtcg
     4141 tcggagacga agatcagctc gtaagccggg tagtgctgga ggaagagcga cgcg
//
LOCUS       DASPKR010000011         5184 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1037166, whole genome shotgun sequence.
ACCESSION   DASPKR010000011 DASPKR010000000
VERSION     DASPKR010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5184)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5184
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1037166"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..448)
                     /locus_tag="VD968_00260"
     CDS             complement(<1..448)
                     /locus_tag="VD968_00260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12858.1"
                     /translation="MRLSKRLHGMGGRAAEWLGRVRVWLRGVMPRVAAAAAVLFVLRL
                     LLAGTRAYRETPLGLLGLVTFLAVSATLTYYGLKFLVRLKRALLWRVRRRLVITYLFV
                     GLTPVVLLLVLGLMVALGGSAQAMARVVTVQLSATERQALGSARALA"
     gene            complement(518..1858)
                     /locus_tag="VD968_00265"
     CDS             complement(518..1858)
                     /locus_tag="VD968_00265"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE12859.1"
                     /translation="MSSLTYMELIRGNRPFRWLLAGQVVSELGNWFNLIAVLGLVRVV
                     TGAAPEATAVLIVLRLAPFALFAPLAGALVDRWSRRAVMIVSDLGRAVFALGFLLVRS
                     AEDLWIAYACTIISTVVSAFFEGAKNAAVPNVVGDRGLLAGNALMFSSRFLLMAVGSA
                     LGGAASYQFGYDAAFVINALSFVVSAYTVWLVPEEAVRSKQAAKPEPAAGRGVARVWR
                     DMRDGWRYIAGHRLVAAIIGINILWALGGGASSLVYERLGSVVFAGGGGMEGDAGVAA
                     VHAAVGAGLFAGMLLARRVGAHVEVRKTTPAFMGWAIFAHGVLFALSGLMPTLWLACV
                     VMFVSRALLGVEFAVQETLLMRLLPDSYRGRVGTTDRAAEISVMSLSGVMGGWLLSGP
                     LTPRSLAVASGLVSALPGLVWLALFAAGKLSMPARAQAGGGEEPRDEEALAHAG"
     gene            complement(1984..2928)
                     /locus_tag="VD968_00270"
     CDS             complement(1984..2928)
                     /locus_tag="VD968_00270"
                     /inference="COORDINATES: protein motif:HMM:NF013046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase"
                     /protein_id="HYE12860.1"
                     /translation="MKTAVIHHPVYEQHDTGPGHPESPERYAVVMKALREDGELWQRL
                     LEVEATAAPRGDVQAVHAPQHFKQVERAVSEGIGYLDADTVVSMRSLEAALRAAGGAC
                     LAVDMVMRGEAQNAFLPSRPPGHHATPDRAMGFCLFNTAAIAARYAQRHYREVERVAV
                     IDWDVHHGNGTQGVFYDDPSVFFFSAHQYPWYPGTGARGETGVGRGRGYTLNVPLRAR
                     TPASEHRRAFEAALEEIGAKFRPDFVVISAGFDSHAADPLGQLMLSDEDFVSMTRTVK
                     GWAREACSGRVLSCLEGGYNLSTLGATVRAHVRALAEE"
     gene            3181..3600
                     /locus_tag="VD968_00275"
     CDS             3181..3600
                     /locus_tag="VD968_00275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12861.1"
                     /translation="MCKVRILACLVCLIFLLTSIVPEALGQTRRKRSRFGRKARTAAI
                     IAGGAGVGALVGGKKGAAIGAGGAGLYAFNRRAARRHFKGRTRTIGSIASGSALGAGV
                     GGAVGGKRAAVAGAVLGGTGGYIYKRSRARRRVTRRY"
     gene            3740..4393
                     /locus_tag="VD968_00280"
     CDS             3740..4393
                     /locus_tag="VD968_00280"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HYE12862.1"
                     /translation="MSYDEEQHRRSRVVVETPTARREVVQQQTVRYPPERRGYSTGVL
                     VTVALVAIAATAILFLFLTNSGGDAETNVNVRAAMPAAPTPVMQQPVIVQPTPMTMPT
                     PLIIQAPPVTTAPPPVIVQAPPTTTDPAATAPPASSTAPPASANDDATIQQKIDKAFA
                     DDASVASANIDAIVISGKVVLTGTVATETLKQRAERLAYGVKGVRSVENRIAVAPAP"
     gene            complement(4469..4630)
                     /locus_tag="VD968_00285"
     CDS             complement(4469..4630)
                     /locus_tag="VD968_00285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12863.1"
                     /translation="MFRLEGEEGGGQTLEDAGRDERDYVRGRLREELGREPTEEEIDE
                     WLREHTEGY"
     gene            4850..>5184
                     /locus_tag="VD968_00290"
     CDS             4850..>5184
                     /locus_tag="VD968_00290"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYE12864.1"
                     /translation="MRTKTMELCGWGRRLRSRSRVARPENVSAVRLDGEPSVLARGLG
                     RSYGDAAQLAGGLVVLTERLNRFLSFDSSTGLLRAEAGTTMAEVLETFVPRGWFPSVT
                     PGTKFVTLGG"
BASE COUNT          860 a         1859 c         1738 g          727 t
ORIGIN      
        1 cggccagcgc gcgcgccgag ccgagagcct gccgctccgt cgcgctcagt tgcacggtca
       61 cgacgcgcgc catcgcctgc gcggaaccgc cgagcgccac catcagcccg agcacgagca
      121 ggagcacgac gggcgtcaag cccacgaaca gataggtgat gaccagccgc cggcgcactc
      181 gccacagcag cgcccgcttg aggcgcacga ggaatttcag gccgtagtag gtgagcgtag
      241 ccgagacggc gaggaaggtg acgagcccga gcagcccgag cggcgtctcg cggtaggcgc
      301 gcgtccccgc cagcagcagg cgcagcacga agagcacggc cgccgccgcc gccacgcgag
      361 gcatcacgcc ccgcagccac acgcgcacgc gccccagcca ctccgcggcg cgcccgccca
      421 tgccgtgcaa tcttttactc agtctcatct caggccgacc ccgcaaggtt acgacacacg
      481 cgcctgattt tactacggcc cgcgcgcggc gcctgtttca cccggcgtgc gcgagcgcct
      541 cttcgtcgcg cggctcctcg ccgccgcccg cttgcgcgcg cgcgggcatg gagagtttgc
      601 ccgcggcgaa gagcgcgagc cacacgaggc ccggcagcgc tgagactagc cccgacgcga
      661 cggcgagcga gcgcggcgtc agaggccccg acagcaacca gccccccatc acgcccgaca
      721 ggctcatcac ggatatttcc gcggcgcggt ctgtcgtgcc tacgcgcccg cggtaggagt
      781 cgggcagcag gcgcatcagg agcgtctcct gcacggcgaa ctcgacgccg aggagcgcgc
      841 gcgagacgaa catcactacg caggcgagcc agagcgtcgg catcaacccc gagagcgcga
      901 agaggacgcc gtgcgcgaag atggcccagc ccatgaaggc aggcgtcgtt ttgcgcacct
      961 cgacgtgcgc gccgaccctg cgcgcgagca gcatccccgc gaacagcccc gcgcccacgg
     1021 ccgcgtggac ggcggcgacg cccgcgtcgc cctccatccc cccgcccccg gcgaagacga
     1081 cgctccccag ccgctcatag acgagcgacg acgcgccgcc gcccaaagcc caaagtatgt
     1141 ttatgccgat gatggccgct accagcctgt gcccggcgat gtagcgccag ccgtcgcgca
     1201 tgtcccgcca gacgcgcgcg acgccgcggc ccgccgccgg ctccggcttc gccgcctgct
     1261 tcgagcgcac ggcctcttcg gggacgagcc agaccgtgta ggccgaaacg acgaaggaga
     1321 gcgcgttgat gacgaaggcc gcgtcgtagc cgaactggta gctcgccgcc cctccgagcg
     1381 cggagcccac ggccatcagg aggaaccgcg acgagaacat aagggcgttg ccggcgagca
     1441 ggccgcggtc gcccaccacg ttaggcacgg cggcgttctt cgcgccctcg aagaaggccg
     1501 agacgaccgt agagattatc gtgcaggcgt aggcaatcca gaggtcttcg gccgagcgca
     1561 cgagcaggaa cccgagcgcg aagaccgcgc gcccgaggtc tgacactatc atcaccgcgc
     1621 ggcgcgacca gcggtcaacg agcgcgcctg cgagcggcgc gaacagagcg aagggcgcga
     1681 gcctgagcac gatgagcacg gccgtcgcct ccggcgcggc gcccgtcacg acgcgcacca
     1741 gccccagcac ggcaatcagg ttgaaccagt tgccgagctc cgagacgacc tgccccgcga
     1801 gcagccacct gaacgggcgg ttgccgcgga tcagctccat gtaagtcagc gacgacatac
     1861 ggcgaaatag aaaaactacg agccgcctcg atttactttc ggcggctcgc cacaaaccaa
     1921 cccgaaaact ttagaactga cgctccccgt ggataacgac ggcgaagccc gccgggttcc
     1981 cgcctactct tccgcgagcg cgcggacgtg cgcgcggacg gtcgcgccga gcgtcgagag
     2041 gttgtagccg ccttcgaggc aggacaggac gcggcccgaa caggcctcgc gcgcccagcc
     2101 cttcaccgtg cgcgtcatag agacgaagtc ctcgtccgag agcatgagct gcccgagcgg
     2161 gtctgcggcg tgcgagtcga agccggcgga gatgacgacg aagtccggcc tgaacttcgc
     2221 gcctatctct tcgagcgcgg cctcgaaggc ccggcggtgc tccgaggcgg gagtgcgcgc
     2281 gcgaagcggt acgttcaaag tgtagccgcg cccccggccc acgcccgtct cgccgcgcgc
     2341 gccggtgccg ggataccacg ggtactggtg cgcggagaag aagaagaccg aagggtcgtc
     2401 gtagaagacg ccctgcgtgc cgttgccgtg gtgcacgtcc cagtctatga cggcgacgcg
     2461 ctctacttca cggtaatgcc tctgcgcgta gcgcgcggcg atggccgccg tgttgaagag
     2521 gcagaagccc atcgcgcggt cgggcgtggc gtggtggccg ggcgggcgcg agggcaggaa
     2581 ggcattctgc gcctcgccgc gcatcaccat gtcaacggcg aggcaggcgc cgcccgcggc
     2641 ccgcagcgcc gcttcgagcg agcgcataga gacgacggtg tctgcgtcga ggtagccgat
     2701 cccttcgctc acggcgcgct cgacctgctt gaagtgctgc ggggcgtgga cggcctgcac
     2761 gtcgccgcgc ggcgccgcgg tcgcctcgac ttccaggagt ctctgccaaa gctcgccgtc
     2821 ctcgcgcagc gccttcatca cgacggcgta gcgctctggg ctctcggggt ggccggggcc
     2881 cgtgtcgtgc tgctcgtaaa cagggtgatg tatgacggcc gtcttcatgc gggcgattat
     2941 gcgagagcgc ccgcgggcgg tcaaacaaca cgacggcggc agggcgggga gcttcgtgcg
     3001 agcatgaaat cagtacgttc gcggcccggg cgacgtgccg ggcgtgacgt aaaactcaac
     3061 gttttcgcag ccgtgcggcc ttcggccttg cgcggaatgg gttttgctga aagactggcg
     3121 cgtgagactt ctctccctta acagtcgggc gaattttcca acgggggttg agaaactttt
     3181 atgtgcaaag tcagaatcct tgcctgcctc gtctgcctta tcttcctttt gacgagcatc
     3241 gttcccgaag ctttaggaca gacaagacgg aagcgctcgc gcttcggccg taaggccagg
     3301 acggctgcca ttatcgcggg aggggccggc gtgggcgcgc tcgtgggcgg caagaagggc
     3361 gcggccatcg gcgcgggcgg cgcgggcctc tacgccttca accggcgcgc ggcgcgcagg
     3421 cacttcaagg ggcggacgcg cacaatcggc tcgatagcga gcggctccgc gctcggcgcg
     3481 ggcgtgggcg gcgcggtcgg cggcaagcgc gcggccgtcg caggcgctgt cctggggggt
     3541 acgggcggct acatttacaa gcgctcgcgc gcccgcaggc gggtcacgcg acgctactaa
     3601 ccggcaaagc gtgaggctgc cgaaagaggg cgcaggcgcg ggaggggacg agccctcccg
     3661 cggtttgcgc ttgccgccgc gcgcgtttta tataaaactt ccctcgctcg cctttcacta
     3721 aagacagtca ggagctttta tgtcatacga cgaagagcaa cacagacgca gccgcgtcgt
     3781 cgtggagact cccacggcgc ggcgcgaggt cgtgcagcag cagaccgtcc gctacccgcc
     3841 cgagcggcgc ggctactcga cgggcgtgct cgtcaccgtg gcgctcgtgg ctatcgcggc
     3901 cacggccatc ctcttcctat tcctgaccaa ctcgggcggc gacgccgaga ctaacgtcaa
     3961 cgtccgcgcg gccatgcccg cggcgccgac gcccgtcatg cagcagcccg tcatcgtgca
     4021 gccgacgccg atgacgatgc cgacgcccct catcatacag gcgccgccgg tcacgaccgc
     4081 gccgccgccc gtcatcgttc aagcgccccc gacgacgacc gaccccgccg cgactgcgcc
     4141 gcccgcctcc tcgacggccc cgcccgcgag cgcgaacgac gacgcgacca tacagcagaa
     4201 gatagacaag gcgttcgccg acgacgcgag cgtcgcctcg gcgaacatag acgccatcgt
     4261 catctccggc aaggtcgtgc tcacggggac ggtcgcgacc gagacgctga agcagcgcgc
     4321 cgagcggctg gcctacggcg tcaagggcgt gcgcagcgtc gagaaccgca tcgccgtcgc
     4381 gcccgccccc tgaagcgccg acgataaagc ttaaaaggca ggggccgcgc tcgtaggtca
     4441 ttccgagcgc ggccccagca cttgtctctt agtagccttc cgtgtgctcg cgcagccact
     4501 cgtctatctc ttcctcggtg ggctcgcggc ccagctcctc gcggaggcgc ccgcgcacgt
     4561 agtcgcgctc gtcgcgcccg gcgtcttcga gcgtctggcc gccgccctct tccccctcca
     4621 ggcggaacac cggcgccggc ctagactcct cacatctttc gacggacata gctcgccccc
     4681 tcttatttcg cgtcacgaat tctagtgttg tagcgcgcat agtatccgcg agcgcgcacc
     4741 gcgctgcaag agacggcgcc cgcgcgcggg gagcgcgttg cgcgcgggag cgcggaggct
     4801 ttaaactcgc aggcgctctt tcccgctctt cttttctttt ttcgacgcga tgcgcacgaa
     4861 gacgatggag ctgtgcggct gggggcggcg cctgcgctcg cgctcgcgtg tcgcgcgccc
     4921 tgagaacgtc tcggccgtgc gcctcgacgg cgagccgagc gtgctcgcgc gcggcctcgg
     4981 ccgcagctac ggcgacgccg cccagctcgc gggcggcctt gtagtcctca cggagcgcct
     5041 caaccgcttc ctctccttcg actcctcgac tggcctgctc cgcgccgagg ccgggacgac
     5101 gatggccgag gtgctcgaga ccttcgtccc gcgaggctgg ttcccttccg tcacgcccgg
     5161 caccaagttc gtcaccctcg gcgg
//
LOCUS       DASPKR010000012         4942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1683610, whole genome shotgun sequence.
ACCESSION   DASPKR010000012 DASPKR010000000
VERSION     DASPKR010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4942)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4942
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1683610"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            253..1248
                     /locus_tag="VD968_00295"
     CDS             253..1248
                     /locus_tag="VD968_00295"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE12865.1"
                     /translation="MKRLVASALVAALLLPAAAAAHTHGHRGAQDDLSKVEIKTTKVA
                     GSVYMLEGAGGNIGVTAGPDGVLIVDDQFAPLAEKIRAAIRPLGTGRLRFVLNTHWHG
                     DHTGSNAALSGEATILAHANVRRRLMAGATIFGQNIPPAPKEALPVITYDAGAQIHFN
                     GEEIRVVHFPAGHTDGDSVIFFTGSNVIHMGDDFFTARFPFVDITSGGSVEGLMRNVS
                     EIIAKAPADVKIIPGHGPLSTLDDLRAYHSMLRETTEHIRQRALAGKTLEQIKAEGLP
                     GKWASWGTGFIKTDFWIETVYRSLALGEKKAGAGAALRRDWLSLSLPAGLQFYAS"
     gene            complement(1344..2534)
                     /locus_tag="VD968_00300"
     CDS             complement(1344..2534)
                     /locus_tag="VD968_00300"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: protein motif:HMM:NF003766.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008973 - phosphopentomutase activity
                     [Evidence IEA];
                     GO_process: GO:0009117 - nucleotide metabolic process
                     [Evidence IEA];
                     GO_process: GO:0043094 - cellular metabolic compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HYE12866.1"
                     /translation="MTKDRPAFERITLVVLDSLGMGEMPDAAEWGDAGSDTLGHICES
                     RQVKLPNLQSWGLGNIRHLAGVPPVEAPRASYGRCALKSNGKDTTTGHWEMVGIILER
                     AFPTYPKGFPPEVLDRFVAETGVPGVLGNYPASGTEIIKELGEEHVRTGKPIVYTSAD
                     SVFQIAAHEETIPVPRLYEICETARRILSGEHEVGRVIARPFVGGPGSFKRTENRHDY
                     AVPPPRENLLPMLSGAGLEVVSVGKISSIYDAAGVTRELPGKNNEQSVDQTIEALRTT
                     ERGLIFSNLVDFDMLYGHRRDVEGYARALERFDERLPEIERAMRDTDLLVITADHGND
                     PTYRGTDHTREYAPLLAYGPRARAGVNLGDRRSLSDIGQTIAENFGLRLAAGESFLSS
                     VAER"
     gene            complement(2628..4511)
                     /locus_tag="VD968_00305"
     CDS             complement(2628..4511)
                     /locus_tag="VD968_00305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12867.1"
                     /translation="MKNRNSASPRAALVSAALLTVCAALAVVTLDLRSTRHYVKQFPF
                     KVETASREGEALVLLSSSAQGWTGSRLGEWATAVGVAFGVVIDIPEPLTGTVTLVRLL
                     DAGRGGGSLVAGREVVAKLPPAGSLLAEGGELFYALEPYGGDELVEEEFEGFDFAAGA
                     AAGRAWRWDGESFVALGADESAQLVARARERALKRHARTPQERGAGAPEGGWKLTQKY
                     ISASSDLGSLDLRGGRWALRSEGFINPAAGSGTLSLRLVNERSREGETLVRTHGGWAE
                     VSRAQYKELRDENFNVLAGQYVGPRPAPNAATLTAGLLFALLLPYFLLRHSLVRSIGQ
                     AMSYPDASPEHFPNLDRDALARYTSELEARGFVRLREYTVVSSSNVPPTRPLVFARLF
                     AHTELRLFAELGQIFGAEDAAISTGLSCAVFTTFEEGWTLCVTDREPNPVIYALRRPK
                     ALWLSRPGARLEELIEWHTDLRGQMVEVLDLRVIEDVRAEVFLRCSSESVEEMRRVMQ
                     KRGRLLLPFLFEHSRVSARPRHEWLGDYGLRAPYGWSPPAASGREGESGIGRARAAVA
                     NWVGVTNFVGNVLIAMSVVLLLFSYNPARGALYFRLALSVGGLALVYLPRLVGARKGA
                     AVR"
     gene            complement(4690..>4942)
                     /locus_tag="VD968_00310"
     CDS             complement(4690..>4942)
                     /locus_tag="VD968_00310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12868.1"
                     /translation="RVAREEMNQLARDSGGKTFAVADLRDARQAFRQVAEEIGTLYSL
                     GYYSTNPARDGAFRAIRVQVRGVAGAQVRAREGYQAPKS"
BASE COUNT          822 a         1663 c         1685 g          772 t
ORIGIN      
        1 cgtgaagctg gcggcgctcc tcgacaaatg ggagcggcgc gagcgcgagg tgaagattga
       61 ctacatcggc ttcaaaatcc ccgacgcctt cgtcgtcggc tacggcctcg acttcgccga
      121 gcgctaccgc aacctgccat acatcgcggt tctcaagaac cctgagattt agtaggcgga
      181 aggcagcaac acgcatcaag ctgttttcga ccgcattctg ccttctgcct tccttccaac
      241 aaaggagctt acatgaagag actcgtggcg tcggctctag tggccgcact gctcctgccc
      301 gcggcggccg ccgcgcacac gcacggccac cgcggcgcgc aggacgacct ctcgaaggtc
      361 gagataaaga cgacaaaggt cgcgggcagc gtctatatgc tcgaaggcgc gggcggcaac
      421 atcggcgtga cggccggccc cgacggcgtg ctcatcgttg acgaccagtt cgcgccgctc
      481 gccgagaaga ttcgcgcggc gataaggccg ctcgggacgg gccgcctgcg attcgtgctc
      541 aacacgcact ggcacggcga ccacaccggc tcgaacgcgg ctctcagcgg cgaggccacc
      601 atactcgcgc acgcgaacgt ccgccgccgg ctcatggccg gcgcgaccat cttcggccag
      661 aacatcccgc ccgcgccgaa ggaggcgctg cccgtcatca catacgacgc gggcgcgcag
      721 attcacttca acggcgagga gattcgagtc gtccacttcc ccgccggcca cacggacggc
      781 gacagcgtca tcttcttcac cggctcgaac gtcatacaca tgggcgacga cttcttcacc
      841 gcgcgcttcc ccttcgttga cataacgagc ggcgggagcg tcgagggcct gatgcgcaac
      901 gtctcggaga taatcgcgaa ggcgccggcc gacgtgaaga taatccccgg ccacggcccg
      961 ctctcgacgc tcgacgacct gcgcgcctac cactcgatgc tccgggagac gaccgagcac
     1021 atacgccagc gcgcgctggc cgggaagacg ctcgaacaga taaaggccga ggggctgccc
     1081 gggaagtggg cgtcgtgggg gacgggcttc atcaagaccg acttctggat cgagaccgtc
     1141 tatcgaagcc tcgccctcgg cgagaagaag gccggcgccg gcgccgcgct gcgccgagac
     1201 tggctaagcc tcagcctccc cgccggccta cagttctacg cctcctgaag cgccactaac
     1261 cgacatcaca agccgaaggc ccggaggggc cgccgcagtc tagcggcggc ccctccgggc
     1321 cttcggatgg tgcgtagttt cgattagcgt tcggcgactg aggagaggaa gctctcgccg
     1381 gccgcgaggc gcaggccgaa gttctccgcg atggtctggc ctatgtcgga gagcgagcgg
     1441 cggtcgccca ggtttacgcc tgcgcgggcg cgcgggccgt aggcgaggag aggggcgtac
     1501 tcgcgcgtgt ggtctgtgcc gcggtaggtc gggtcgttgc cgtggtcggc ggtgatgacg
     1561 aggaggtctg tgtcgcgcat ggcccgctct atctcgggca ggcgctcgtc gaagcgctcc
     1621 agggcgcggg cgtacccttc aacgtcgcgg cggtggccgt agagcatgtc gaagtcaacg
     1681 aggttcgaga agatgaggcc gcgctcggtc gttcgcagcg cctcgatggt ctggtcaacc
     1741 gactgctcgt tgttcttgcc cggcagctcg cgcgtcaccc ccgccgcgtc gtagatggag
     1801 cttatcttgc cgacggagac gacttcgagc ccggcgcctg agagcatcgg caggaggttc
     1861 tcgcgcggcg gaggcacggc atagtcgtgc cggttctcgg ttcgcttgaa tgagccgggc
     1921 ccgccgacga aggggcgggc gatgacgcgg ccgacctcgt gctcgccgct caaaatccgc
     1981 cgggccgtct cgcaaatctc gtagaggcgc ggcacgggga tagtctcctc gtgcgccgca
     2041 atctgaaaga ccgagtcggc cgaggtatag acgatgggct tgcccgttcg gacgtgctcc
     2101 tcgcccagct ccttaattat ctcagtcccc gaggccgggt agttgccgag cacgcccggc
     2161 actccggtct ccgcgacgaa gcggtctaag acttccggcg ggaacccttt cgggtaggtc
     2221 gggaaggccc gctcgaggat gatgccgacc atctcccaat gccccgtcgt cgtgtccttg
     2281 ccgttcgact tcaaggcgca gcggccgtag ctggcgcgcg gcgcctcgac gggcggcacg
     2341 cccgcgaggt ggcggatgtt gccgaggccc cacgactgaa ggttcggcag tttaacttgt
     2401 ctcgactcgc agatgtggcc gagcgtgtcg gagccggcgt cgccccactc ggcggcgtcg
     2461 ggcatctctc ccatgccgag gctgtcgagg actacgagcg tgatgcgttc gaaggcgggg
     2521 cggtctttcg tcatggcgtc ggcggccttt ccacgatctt aagagtgact gtcgtgccgc
     2581 cgattaaact acatccgcct atgcgtttca aaacgcgcgg agcccgctca cctcacggcc
     2641 gcgcccttgc gcgcgccgac gagcctcggc agatagacga gcgcgaggcc gccgacgctc
     2701 aaggcgagcc ggaagtagag cgcgccgcgg gcggggttgt aactgaagag taagaggacg
     2761 acggacatcg cgatcaggac gttcccgacg aagttcgtga cgcccaccca gttcgcgacc
     2821 gccgcgcggg cgcggccgat gcctgactca ccctctcggc ccgacgccgc gggcggcgac
     2881 cagccgtagg gcgcgcgcag cccgtagtcg cccagccact cgtggcgcgg ccgcgcgctg
     2941 accctagagt gctcgaagag gaaaggcaaa agcagccggc cgcgcttctg catcacgcgg
     3001 cgcatctcct cgaccgactc cgaagagcac cgcaggaaga cttcggcgcg cacgtcctcg
     3061 atgacgcgga ggtctaagac ttcgaccatc tggccgcgca ggtcggtgtg ccactcgata
     3121 agctcttcga gccgcgcgcc ggggcgcgaa agccagagcg ccttcgggcg gcgcagggcg
     3181 tagatgacgg ggttcggctc gcggtcggtc acgcagagcg tccagccttc ctcgaacgtc
     3241 gtgaagacgg cgcaggacag ccccgtagag atggcggcgt cttctgcccc gaaaatctgt
     3301 cccaactcgg cgaagaggcg cagctccgtg tgcgcgaaca ggcgcgcgaa gacgagcggg
     3361 cgcgtcggcg ggacgttgct cgaagagacg accgtgtact cgcgcaggcg cacgaagccc
     3421 ctcgcctcaa gctctgacgt gtagcgcgcg agcgcgtcgc ggtcgaggtt agggaaatgc
     3481 tcggggctcg cgtccgggta ggacatggcc tgccctatcg agcgcacgag ggagtggcgc
     3541 agaagaaagt agggcagcag caacgcgaac agcagccccg ccgtcaacgt ggcggcgttc
     3601 ggcgctgggc gcgggccgac gtactgaccg gccagcacgt taaagttttc gtcgcgcagt
     3661 tctttgtact gcgcgcggct aacctccgcc cacccgccgt gcgtgcgcac cagcgtctcg
     3721 ccctcgcgcg accgctcgtt cacgagccga agcgacaacg tgccgctgcc cgcggccggg
     3781 ttgatgaagc cctccgacct caaggcccag cgcccgccgc gcaggtcaag cgagccgagg
     3841 tcggacgagg ccgagatgta tttttgcgtg agcttccagc cgccctcggg cgcgcccgcc
     3901 ccgcgttcct gcggcgtgcg cgcgtgcctt ttgagcgccc gctctctggc gcgggcgacg
     3961 agttgcgcag actcgtccgc gccgagcgcg acgaagcttt cgccgtccca gcgccacgcg
     4021 cggcccgccg cggcccctgc ggcgaagtcg aacccttcaa actcctcttc aacgagctcg
     4081 tcgccgccgt aaggctcgag ggcgtagaag agctcgccgc cctccgcgag cagactgccc
     4141 gcgggcggaa gctttgctac gacttcccgc cccgccacga gcgagccccc cccgcgcccc
     4201 gcatcaagca ggcggacgag cgtgaccgtg cctgtcagcg gctcgggaat gtctatgacg
     4261 acgccgaacg cgacgccgac ggccgtggcc cactccccga gcctcgaccc cgtccagccc
     4321 tgcgcgctag aggacagcag gacgagcgcc tcgccttcgc gcgaggccgt ctcgaccttg
     4381 aacgggaact gtttaacgta gtggcgcgtc gagcgcaggt cgagcgtgac gaccgcgagg
     4441 gcggcgcaga ccgtgagcag cgcggccgag acaagcgcag ccctcggcga ggcggaattt
     4501 ctgtttttca tcggattcgg gaaccgggcc gggtgggaat tggccgccgg agagagtttg
     4561 ggtcgtcgct tacgccttca gaaacggagg ggcgaagggg ggaggccgta agcgtgcggg
     4621 cgcagcgtgc gccctacaaa catattagca tccgggcggg agcggtcggc aagttttttc
     4681 cttgcggttt tagctcttcg gggcttggta gccttcgcgc gcgcgaacct gcgcgcccgc
     4741 gacgccgcgc acctggacgc gtatggctcg gaaggcgccg tcgcgcgcgg ggttcgtgga
     4801 atagtagccg aggctgtaga gcgtgcctat ctcttcggcg acctgccgga aggcctggcg
     4861 cgcgtcgcgc agatcggcga cggcgaaggt cttgccgccg gagtcgcgcg ctagctggtt
     4921 catctcttcg cgcgccactc gg
//
LOCUS       DASPKR010000013         8189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_519662, whole genome shotgun sequence.
ACCESSION   DASPKR010000013 DASPKR010000000
VERSION     DASPKR010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8189)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8189
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_519662"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..2706)
                     /locus_tag="VD968_00315"
     CDS             complement(106..2706)
                     /locus_tag="VD968_00315"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional serine/threonine-protein
                     kinase/formylglycine-generating enzyme family protein"
                     /protein_id="HYE12869.1"
                     /translation="MIPGDTVLDARYQLEKKLGQGGMGMVFKARHIFIKTQHAIKVIL
                     PDLVGNDPSLTTRFRQEAMAAAAIRHQNTVSVTDYGIINGTTPFLVMEFVEGRSLHEI
                     LSTERRLEPARAIEIMLAVCAGVAAAHRQGIVHRDLKPLNILIKHDLPTAEAVKVLDF
                     GLAKIKSGELLGSFVAAQTQGMMGSPFYMAPEQWSDDDVDARSDIYSLGVILYQMLAG
                     EVPFKGNSIPSIMNKHLTTAPSPLRERGVEAPPLLESAIEHALEKDPKNRPLTVEEFM
                     GELRAALASLNGDAAAPAVGVSTVQMGKPDTIELGRAKAHIGLVTGAEDESADGAASL
                     ETVGDFGLRGGAARTSALAEEQPGNATQAQTPDSRTDELAAGGAPADAVGSGTARHRA
                     EHTVVEPPPIVWGKPTAPLGDASGEHAQAWAEAARAAEEAARLRAAEEARRRGAEEQQ
                     RREAEERERRETEERERLEAQERARRESEERERRESEERARRESEERAAREAEERNRR
                     EEQERAAATAALAARQQQAAAGLQAGGAQSVSQQVASQSAGVGAQPRSRTPLVVLGVG
                     LVVAVMLLGGLGLLAYFKLRGGEDSANVNAGGVGANSNAVSNSNSGARQSGPVRPDLV
                     PLQGGDFELGRSDVPPITEDLKREREAFLLWMYSQWPANSVTVKPFAIDRTEVTNAEY
                     ADFVKETGHAPPPAVWDGDRPKPGEENHPVRNVSYDDAVAFAAWRSRRDGVTYRLPTE
                     AEWEFAARGGDSSALYPWGPQWAAGLANVGAEAPRPVGSFPQGRTPQGVDDMIGNVWE
                     WTSSEAAMYRGNDRTALAPADRGKFVARGGSYASRPDGDEPITATSRRWLARGFRDPV
                     LGFRLVRAEN"
     gene            complement(3133..3810)
                     /locus_tag="VD968_00320"
     CDS             complement(3133..3810)
                     /locus_tag="VD968_00320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12870.1"
                     /translation="MKNLKCTACGLVNFSSAGECRRCGVALAECAGEGAEEAPRRRSL
                     KRRALAGVVLSLFALIGFYVSLLETSEGANLDQRVLVRRAVDLIEDSGLTRDAFLLRR
                     LANYRTTDNWWNRYVGHGEAYAATNFPFEIITLYPQFFDTATDDTERAVILLHEARHL
                     AGGGEEEACASVWRDKWRLGWTKERYGGTRVWQNVSEYTRRHAPQLFTCGQDGAQDCA
                     DIAEAKK"
     gene            complement(3868..5025)
                     /locus_tag="VD968_00325"
     CDS             complement(3868..5025)
                     /locus_tag="VD968_00325"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HYE12871.1"
                     /translation="MPVKIDDLLRAATQFGASDLHVKAGSQPYMRIGGELRPVMDAPR
                     LTQEDTLDMAFSMMSNRQKQRFKEESEADIAYGVSGLGRFRANIFQQRGTVGMVLRVI
                     PDMVRAITELGLPPVVETIAEEQRGLVLVTGTTGSGKSTTLAAMIDHMNATRGGHIIT
                     IEDPIEFLHRDKKSFVTQREVDVDTHSFAGALRGALRQDPDVILVGEMRDHETIETAL
                     TAAETGHLVLSTLHTLDATETIRRIVSSFTPHLQKSVRIQLAGILRAVVSQRLVRGVS
                     GGRVPAVEVMVSTSLIRDYIINEEKTSLIRDAIAAGTSQYGMQTFDQSLFNLYQAGLI
                     SLEEALRGSSNPDEFRLRVAGIRSASDQAKEEMERITTVSNNPPRQGVRDE"
     gene            complement(5436..6530)
                     /locus_tag="VD968_00330"
     CDS             complement(5436..6530)
                     /locus_tag="VD968_00330"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: protein motif:HMM:NF005146.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HYE12872.1"
                     /translation="MFNDDARKKDVKTPTIVQEVWHNGRFIKWDDARVHVMSHVLHYG
                     SSVFEGIRCYKTKRGPAIFRLREHMQRFLNSAKIYRMSHDWSLDTLCDAATQLVARSQ
                     LQQCYIRPIMFRSLDEERPAFGVNPFPNPMACYMGAWDWGKYLGDEAIEQGVDVCVSS
                     WNRLTPNSMPAMAKAGANYMNSQLIKMEAIINGFAEGIALDDRGYVSEGSGENIFLVH
                     DGKVVTPPLASSILPGITRDSVIEICRSLEIPLVESAIQRAALYVADEIFFTGTAAEV
                     TPIRSVDRIPVGEGKRGPITERVQKLFFEITSGEREAPGDWLTFVNERKASAAASPAE
                     SNGHNAAQARPAKNAQAPGARDAIHVTLTE"
     gene            6829..8112
                     /locus_tag="VD968_00335"
     CDS             6829..8112
                     /locus_tag="VD968_00335"
                     /inference="COORDINATES: protein motif:HMM:NF013413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HYE12873.1"
                     /translation="MTLRRAKLCAAGLWCAAALALCGGCATLKQDERKAGANPPAQSP
                     SAERARGGEEDVHRRAVAVDMHADTVQFMLDEGADINRRLATTHLDAVRMREGGLDAQ
                     FFSIWVEPNVYGSGGARAVERADAQIAKVRALAEEHPETWALAATAEDIRRAAAEGKL
                     SALMGLEGGYAIDGKIENVERYFRMGVRYMSLTWTYSLPWAGSSGDSAGQARGLDDFG
                     RRVVAEMNRLGMMVDVSHVSDKTFWDIVEVSGSPVIATHSNARAIAPEPRNLTDEMIR
                     AVARTGGVVCVVFYPAFVEPGWRAVKDRLDAEIAPLVSEAGRRAQGNGSIKRIARDRV
                     REREYAKRLPPVPVSRVVDHIDHIVRLVGVDHVGLGSDFDGIQAVPAGLASVAELPNL
                     TAELLRRGYTEEDVAKILGGNVLRVMEEVGRRAGR"
BASE COUNT         1235 a         2705 c         2796 g         1453 t
ORIGIN      
        1 agcgccacgg ccgcgaacgc gaaagaggcg ggcgcgagcc gacgccccgc ccggaactgt
       61 gcgaaaaact gcttcataaa gatcattcct taattaaacc ggaaatcaat tctccgcgcg
      121 cacgaggcgg aagccgagca ccgggtctcg gaagccgcgt gcgagccagc ggcgcgaggt
      181 agcggtgatg ggctcgtcgc cgtcggggcg gctcgcgtag gagcccccgc gcgcgacgaa
      241 cttcccgcgg tctgccggcg cgagcgccgt gcggtcgttg ccgcggtaca tcgcggcctc
      301 ggagctagtc cactcccaga cgttgcctat catgtcgtcc acaccctgcg gcgtgcgccc
      361 ctgcgggaag gagcccacgg gccgtggggc ttccgcgccg acgttcgcta gccctgcggc
      421 ccactgaggc ccccacgggt agagcgccga tgagtcgccg ccgcgcgcgg cgaactccca
      481 ctcggcctcg gtaggcagac ggtacgtgac gccgtcgcgg cgcgagcgcc aagcggcgaa
      541 agccacggcg tcatcgtagg agacgttccg gacggggtga ttctcctcgc ccggcttcgg
      601 gcggtcgccg tcccaaaccg cgggcggcgg cgcgtggccc gtctctttga cgaaatcggc
      661 gtactccgcg ttcgtcacct ccgtccggtc aatcgcgaat ggttttactg tgacgctgtt
      721 ggccggccac tggctgtaca tccagagcag gaacgcctcg cgctcgcgct ttaaatcctc
      781 cgtgatgggc ggcacgtccg agcggccgag ctcgaagtcg ccgccttgga gcgggacgag
      841 gtccggccgc accgggcctg actgccgcgc gcccgaattc gagttcgaga cggcgttgct
      901 gttagcgccc acgccgcccg cgttcacgtt cgcggagtct tctccgccgc gaagcttgaa
      961 gtacgcgagt aggccgagcc cgcccagcag catgacggcg acgacgagcc cgacgccgag
     1021 cacgacgagc ggcgttctcg agcgcggctg cgccccgacg cccgccgact gcgacgcgac
     1081 ctgctgcgag accgactgcg cgccgcccgc ttgcagcccg gccgccgcct gttgttgccg
     1141 cgccgcgagc gcggccgtcg cggcggcgcg ctcctgctcc tcacgacggt tgcgctcctc
     1201 ggcctcgcgg gccgcgcgct cttccgattc gcggcgagca cgctcctccg attcgcgtcg
     1261 ctctctctcc tccgactctc tgcgcgcgcg ctcctgcgct tcgaggcgct ccctctcttc
     1321 cgtctcccgg cgctcgcgct cctccgcctc gcgcctctgc tgttcttccg ccccgcgccg
     1381 gcgcgcctcc tccgcggccc tgagccgcgc ggcctcttcg gcggcgcgcg ccgcttcggc
     1441 ccacgcctgc gcgtgctcgc ccgaagcgtc gccgagcggg gcggtaggct tgccccaaac
     1501 tataggcgga ggctctacga ccgtgtgctc ggcgcggtgg cgcgccgtgc ccgagccgac
     1561 ggcgtcggcc ggcgcgccgc ccgccgcaag ctcgtcggtg cgcgagtcgg gcgtctgcgc
     1621 ctgcgtggcg ttgccgggct gctcttcagc cagggcgctc gtgcgcgccg cgccgccgcg
     1681 cagcccgaag tcgcccaccg tctcaaggct cgcggcgcca tcggccgact catcctccgc
     1741 gccggtcaca agcccgatgt gcgccttcgc ccggccgagc tcgatcgtgt cgggcttgcc
     1801 catctgcacg gtcgagacgc cgacggcggg cgcggccgcg tcgccgttca ggctcgcgag
     1861 cgcggcacgc agctcgccca tgaactcctc gaccgtcagc ggcctgttct tcgggtcttt
     1921 ctccagcgcg tgctcgatcg cgctctcaag gagcggcggg gcctccaccc ctcgctccct
     1981 gagcggcgag ggcgcggtcg tcaggtgctt gttcattatc gaggggatgc tgttcccctt
     2041 gaacggcacc tcgccggcga gcatctggta gaggatgacg ccgagcgagt agatgtcgga
     2101 gcgcgcgtca acgtcgtcgt cgctccactg ctcgggcgcc atgtagaagg gcgagcccat
     2161 catcccttgc gtctgcgcgg cgacgaacga gcccagtagc tcgcccgact ttatcttcgc
     2221 cagcccgaag tcgagcacct tgacggcctc ggccgtcggc aggtcgtgct taataaggat
     2281 gttcaggggc ttgaggtctc ggtggactat cccctgcctg tgcgcggccg ccacgcccgc
     2341 gcacacggcg agcataatct cgatggcgcg cgccggctcc agccgtctct ccgtcgagag
     2401 tatctcgtgg agcgagcgcc cctcgacgaa ctccatgacg aggaagggcg tagtgccgtt
     2461 gatgatgccg tagtcggtga cgcttacggt gttctggtgg cgtatggccg cggcggccat
     2521 cgcctcttgg cggaagcgcg tggtgagcga ggggtcgttg ccgaccaggt cggggaggat
     2581 gactttgatt gcgtgctgcg tctttatgaa gatgtggcgg gccttaaaga ccatccccat
     2641 cccgccctgc cccagcttct tttcgagctg gtagcgcgcg tcgagcaccg tgtcgccggg
     2701 gatcaaaaac ttcagatgat ccccgtcgct aggacagtgg ttgacggtat ccgggaagca
     2761 gcgatggcag gccgggcact ctttcatcta ggtcacttgc ggcgcgaccc gcgaaccccg
     2821 cgcggggcct cacgtcgcac gtcggggccg cacgacaact gccggacttc gtggcgcacg
     2881 cgcgaaaaat tctaacaact cgcctgaact atagcaaaag gaaaaaggta aaaggttctt
     2941 gcggccggcc gcgcacaggc gttgactacg tgcgtgcctc ccccgtcgaa gacagcgcgc
     3001 ggcccaccag gcacaatgtc accccccagc actgcaccgt ctccggcgcc gtcatcttcg
     3061 ccaacaccac ggggctcccg ccatccgtcc ccggagggct gaaggtcggt gcgcacgggc
     3121 gaccagtgcg ccctactttt tagcttcggc gatgtcggcg cagtcctgcg cgccgtcctg
     3181 gccgcaggtg aagagttgcg gcgcgtggcg gcgcgtgtac tcgctcacgt tctgccagac
     3241 gcgggtgccg ccgtagcgct ccttcgtcca gccgagccgc cacttgtcgc gccagaccga
     3301 ggcgcaagcc tcctcctcgc cgccgcccgc gaggtgacgc gcctcgtgca ggagtatgac
     3361 ggcgcgctcg gtgtcgtccg tcgccgtgtc gaagaactgc gggtagagcg tgatgatctc
     3421 gaaggggaag ttggtcgcgg cgtaagcctc gccgtggccg acgtagcggt tccaccagtt
     3481 gtcggtcgtg cggtagttgg cgagacgccg cagtaggaag gcatcgcggg tcaggccgct
     3541 atcttctatg aggtcaacgg cgcggcggac gagcacgcgc tggtcgaggt tcgcgccctc
     3601 cgaggtctct agcagggaga cgtagaagcc tatcagcgcg aagagcgaca ggacgacgcc
     3661 cgcgagcgcg cgcctcttca ggctgcgccg acgcggcgcc tcttccgcgc cctctccggc
     3721 gcactcggcc agcgcgacgc cgcagcgccg gcactccccg gccgacgaga agttcacgag
     3781 cccgcaggcc gtgcatttaa ggttcttcat gtgagcacgg gaggcgccac agcgttggtc
     3841 agtcagccgg cgggtgggcc cggctgttta ttcgtccctg acgccctgcc gcggcgggtt
     3901 gttgctgacg gtggtgatgc gctccatctc ctccttcgcc tggtcggagg cggagcgtat
     3961 gcccgcgacg cgcaggcgga actcgtccgg gttggacgag ccgcgcagcg cctcttcgag
     4021 cgagatgagg ccggcctggt agaggttaaa taacgactgg tcgaaggtct gcatgccgta
     4081 ctgagaggtc ccggctgcga tggcgtcgcg tatgagagag gtcttctcct cgttgatgat
     4141 gtagtcgcgt atgagagagg tggagaccat cacctcgacc gcggggacgc gcccgccgct
     4201 caccccgcgc accaggcgct gcgagacgac cgcgcgcagt atgcccgcga gctgtatgcg
     4261 gactgacttc tgaaggtgcg gcgtgaacga ggagacgatg cggcggatgg tctcggtcgc
     4321 gtcaagtgtg tgcagggttg agaggacgag gtggccggtc tctgcggcgg tgagcgcagt
     4381 ctctatagtc tcgtggtcgc gcatctcgcc gacgagtatc acgtccgggt cttgccggag
     4441 agcgccgcgc agtgcgcccg cgaacgagtg ggtgtcaacg tccacctcgc gctgcgtgac
     4501 gaaagacttc ttgtcgcggt gcaggaactc tatcgggtct tcgatggtga tgatgtggcc
     4561 gccgcgcgtc gcgttcatgt ggtcaatcat cgcggccagc gtcgttgact tgccggagcc
     4621 ggtcgtcccc gtcacgagca caagcccgcg ctgctcttcg gcgatcgtct cgacgacggg
     4681 cggaaggcca agctcggtga ttgcgcgcac catgtctggt atgacgcgta agaccatgcc
     4741 gaccgtgccg cgctgctgga agatgttggc gcggaagcgc ccgagcccag agacgccgta
     4801 ggctatgtcg gcctccgact cctccttgaa gcgctgcttc tgccggttcg acatcatcga
     4861 gaaggccatg tcgagcgtgt cctcctgcgt caggcgcggt gcgtccatga cggggcgcag
     4921 ctcgccgccg atgcgcatgt agggctgcga gccggccttc acgtgcaggt ctgaggcgcc
     4981 gaactgcgtg gcggcgcgaa ggaggtcgtc aattttgaca ggcatcgggg gctcttatgt
     5041 cctctcgggc gggttcgggg ccggcggccg gcacgggcgg taaaaagcgt ccgcttaccg
     5101 atttgcgcgc tttttcggaa agtttttcga cttgaggagg gccgcctact ctccggcggc
     5161 ctttcggggc gggggccgcg cggcggcctt taagccggct cgcgcgccga caagtattct
     5221 agctttccgc tcgcgccccg gtcaacattc attctcgctg acgcattatt tataatcttc
     5281 accggcgtcg tgcagctaca acaaatggag cggccccgcc taggcacggc ggcttgaacg
     5341 acattggtaa accccatttc ccgaggacga gaaaagggcg cccaaggcgg gcgccctttt
     5401 ctcgtgatga catattccgc gttgttttcg gccggctatt cggtgagcgt gacgtgtatg
     5461 gcgtcgcgcg cgcccggcgc ttgcgcgttc ttggcgggtc gcgcttgggc ggcgttgtgc
     5521 ccgttgctct cggccgggga ggccgccgcg gaagcctttc gctcgttgac gaaggtcagc
     5581 cagtcgcccg gagcctcgcg ctcgcccgag gttatctcga agaagagctt ctgcacccgc
     5641 tccgtaatgg ggccgcgctt gccctcgccg acggggatgc ggtcaacact tcgtatgggc
     5701 gtgacctcgg ccgcagtccc cgtgaagaag atttcgtcgg cgacgtagag cgcggcgcgc
     5761 tgtatggccg actcaacgag cgggatttcg agcgagcggc aaatctctat gacgctgtcg
     5821 cgcgtgatgc ccggcaggat ggaagaggcg agcggcggcg tcacgacctt gccgtcgtgg
     5881 acgaggaaga tgttctcgcc cgagccctcg ctgacgtagc cgcggtcgtc gagcgctatc
     5941 ccttcggcaa agccgttgat gatggcctcc atcttaatca actgcgagtt catgtagttg
     6001 gcgccggcct tcgccatagc gggcatcgag ttcggcgtca ggcggttcca cgacgagacg
     6061 cacacgtcca cgccctgctc gattgcctcg tcgccgaggt acttgcccca gtcccacgcg
     6121 cccatgtagc aggccatggg gttcgggaag gggttgacgc cgaaggcggg ccgctcctcg
     6181 tctagcgagc ggaacattat ggggcgtatg tagcactgct gtagctggct gcgggcgacg
     6241 agttgcgtgg cggcgtcgca gagggtgtcg agcgaccagt cgtgcgacat gcggtaaatc
     6301 ttcgccgagt tgaggaagcg ttgcatgtgc tcgcgcaggc ggaagatggc ggggcctcgc
     6361 ttcgtcttgt aacagcgtat gccctcgaag acgctcgagc cgtagtggag cacgtgcgac
     6421 atgacgtgaa cgcgcgcgtc gtcccacttg atgaagcgcc cgttgtgcca gacctcctgc
     6481 acgatggtcg gcgtcttaac gtccttcttc ctcgcgtcgt cgttgaacat aagaactcct
     6541 cgcttctcgg gtttaataaa gtagctgacc tcgcctcgct gccgcttcag atttcggggt
     6601 tcgggcgtgc cgaaggggtg gcgcctgggc acgtgtcacg gggtcaaggc ggacaaataa
     6661 tttcgactac ccgttctggt tctagcactt tttattcagg tgatgcacga tacattaaac
     6721 ccaactcgct tggcaaggtt gcagtcactc aggcagaatc actttgtttc cgagcagtat
     6781 taagttccga gagagcgcgc tctcgcgtgc gcgcttcggg ttattaagat gactctgcga
     6841 cgagcgaagc tatgcgccgc tggcctctgg tgcgcggccg cgctcgcgct gtgcgggggt
     6901 tgcgccactt tgaagcaaga cgaaagaaag gccggggcta atcctcccgc gcagtcgccg
     6961 tcggccgagc gagcgcgcgg cggcgaagaa gacgttcacc gccgcgccgt cgcggttgac
     7021 atgcacgccg acaccgttca gttcatgctc gacgagggcg cggacataaa ccggcgtttg
     7081 gctactacgc acctcgacgc cgtgaggatg cgcgagggcg ggctcgacgc ccagttcttc
     7141 tccatatggg tcgagccgaa cgtttacggc tcgggcggcg cgcgcgcagt cgagcgcgcc
     7201 gacgcgcaga tagcgaaggt gcgcgccctc gccgaagagc acccggagac ctgggcgctc
     7261 gccgcgacgg ccgaagacat tcgccgcgcc gcggccgagg gcaagctctc ggcgctgatg
     7321 ggcctggaag gcggctacgc gattgacggc aagatcgaga acgtggagcg ctacttccgc
     7381 atgggcgtgc gctacatgtc gctgacgtgg acttacagcc tgccgtgggc gggctcgtcc
     7441 ggcgacagcg cggggcaggc gcgcggcctg gacgacttcg gccgccgcgt cgtcgcggag
     7501 atgaaccggc taggcatgat ggttgacgtg tcccacgtct cggacaagac cttctgggac
     7561 atcgtggagg tttcgggctc gcccgtcatc gctacacact cgaacgcgcg cgcaatcgcc
     7621 ccggagccgc gcaacctcac ggacgaaatg atccgcgccg tcgcgcgcac gggcggggtc
     7681 gtctgcgtcg tcttctaccc ggcattcgtc gagccgggct ggcgagccgt caaggatcgg
     7741 ctcgacgccg agattgcgcc gctcgtgagc gaagctggca ggcgcgcgca gggcaacggc
     7801 tccatcaagc gcatcgcgcg cgaccgcgtg cgcgagcgcg agtacgcgaa gcgtctgcct
     7861 cccgtgccgg tctcaagagt cgttgaccac attgaccaca tcgtgcgcct cgtcggcgtt
     7921 gaccacgtag ggctcggctc cgacttcgac ggcatacagg ccgtccccgc cgggctcgcg
     7981 tcggtcgcgg agctgccaaa ccttacggcc gagcttttgc ggcgcggcta tacggaagag
     8041 gacgtggcga agattctcgg tggcaacgtc ctgcgcgtga tggaggaagt cgggcggagg
     8101 gccgggcggt gaagggcgcg gcgtccagga agggcgcgcc ggcgcggcca cgcatcggct
     8161 tccacgcgcc gattgccggg ggcctggcg
//
LOCUS       DASPKR010000014         2090 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1555038, whole genome shotgun sequence.
ACCESSION   DASPKR010000014 DASPKR010000000
VERSION     DASPKR010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1555038"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VD968_00340"
     CDS             <1..240
                     /locus_tag="VD968_00340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12874.1"
                     /translation="AAGASGVEVTLKTGKPGVAKFISPSSGLPVHPLTLTLTNTDQAT
                     FTIQTFDVGAPTAVNVSATANGTTKNARLDVTPSP"
     gene            complement(331..1059)
                     /locus_tag="VD968_00345"
     CDS             complement(331..1059)
                     /locus_tag="VD968_00345"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HYE12875.1"
                     /translation="MERRITSWRSPNVGMDMPLVAYGHDGHPLLMFPTWAADFLEYER
                     FYLIDSIRHLIEAGRLRVYSINSINRYTLMNDDAHPKWRAALMSHFDRYLTDEVLPLI
                     RHESGGREPLTSGASMGAYLAANAYFRHPDLFSGTIPMSGSYDVRSWFDGYHDDNVYY
                     NNPVEYLPNLNDDYYLPRLRRARAIVILSGQGAYEAPERSRELSAILHAKQIPHTLDI
                     WGPDVNHDWPWWRKMLPYWLNRLL"
     gene            1268..1342
                     /locus_tag="VD968_00350"
     tRNA            1268..1342
                     /locus_tag="VD968_00350"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1300..1302,aa:Asn,seq:gtt)
     gene            1507..1788
                     /locus_tag="VD968_00355"
     CDS             1507..1788
                     /locus_tag="VD968_00355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12876.1"
                     /translation="MPRGDKSKYTDKQKRQAEHIEEGYEERGLSEGEAERRAWATVNK
                     SSGGGKKPGGSGRGKKTNKAPAKKGGKKGGKASKGGGAKKGGSKKGGSK"
     gene            complement(1884..>2090)
                     /locus_tag="VD968_00360"
     CDS             complement(1884..>2090)
                     /locus_tag="VD968_00360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12877.1"
                     /translation="EEGYEERGLSEGEAERRAWATVNKSSGGGKKPGGSGRGKKTSKA
                     PAKKGGKKGGKASKGGSAKKGGSK"
BASE COUNT          376 a          657 c          688 g          369 t
ORIGIN      
        1 gcggcggggg cctcgggcgt ggaggtgact ctgaagaccg gcaagccggg ggtggcgaag
       61 ttcataagcc cctcgtcggg gctgcccgtc cacccgctca cgctcacgct gacgaatacc
      121 gaccaggcga ccttcacgat acagaccttc gacgtggggg cgccgaccgc cgttaacgtc
      181 agcgccacgg cgaacgggac gacgaagaac gcgcgcctgg acgtgacgcc gtcgccctga
      241 ggcgcggcgc tcaaagctcg aaggggtgag ccgtaaagga aagtcgcttc ctttacggct
      301 caccccttcg tctttttctc tcagccccgc tcagagcagg cggttcagcc agtagggcag
      361 catcttgcgc caccagggcc agtcgtgatt cacgtcgggg ccccagatgt cgagcgtgtg
      421 cggaatctgc ttggcgtgca gtatcgcgga gagctcgcgg ctgcgctccg gcgcctcgta
      481 ggcgccctgc cccgagagta tgactatggc gcgcgcgcgc cgcaggcgcg gcaggtagta
      541 gtcgtcgttc aggttcggca ggtactctac ggggttgttg taatagacgt tgtcgtcgtg
      601 gtaaccgtcg aaccacgagc gcacgtcgta gctcccgctc atcgggatcg tgccggagaa
      661 caaatctggg tggcggaagt aggcgttggc ggcgaggtag gcacccatgc tcgcgcccga
      721 ggtgagcggc tcgcgcccgc ccgactcgtg gcgtatgagc gggagcacct cgtccgtgag
      781 gtagcggtcg aagtgcgaca tcagcgcggc cctccacttc gggtgcgcgt cgtcgttcat
      841 cagcgtgtag cggttgatgc tgtttatcga atagacgcgc agccgaccgg cttcgatcag
      901 gtggcgtata gagtctatga ggtaaaacct ctcgtactcg aggaagtccg cggcccaggt
      961 cgggaacatc agcaacgggt ggccgtcgtg cccgtaggcg acgaggggca tgtccatccc
     1021 tacgttcggg ctcctccatg aagttatgcg gcgctccata cagaaactct cctcgcacgc
     1081 gccccgcggc ggccgcgccc gaaatcttca attagagtgt gttattacgg ggacagataa
     1141 tctctcaact acgcccccgc gcgcaaggcg ctggagcccc caagccggcc cgtttgacac
     1201 ccgcgcgaac gctctgctat aaaattttcg ccctcgcggg tgacgtcaaa accgcgcggc
     1261 gcgacaatcc gcagtagctc aatggcagag cattcggctg ttaaccgaag ggttgtaggt
     1321 tcgagtccta cctgcggagc caatttcttc aataagatac gggaagcctc cgggcttccc
     1381 gttttcgctt tttcccgttt cgatgttccg cctcacgccg cgctgccatc gcagggcgtg
     1441 ctatagttcg cgaagtttta cgagcatcgg ccgccgggcg accgcggcgg cggaagggag
     1501 gagagtatgc cgaggggcga caagtcgaag tacacggaca agcagaagcg gcaggccgag
     1561 cacatcgaag agggttacga ggagcgcggg ctgtcggagg gcgaggccga gcgcagggcg
     1621 tgggcgacgg ttaacaagtc ttcgggcggc ggcaagaagc cgggcggctc gggccgcggc
     1681 aagaagacta acaaggcgcc cgcaaagaag ggcggcaaga aaggcggcaa agcctcgaag
     1741 ggcggcggcg ccaagaaggg cggctcgaag aaaggcggct cgaagtagag cgccggaagg
     1801 tcaggggcgt aaacgcgaag acggggcgaa cggtttttgc cgtccgcccc gtcgctcatt
     1861 caagcccctg accttccggc gctctacttc gagccgccct tcttggcact accacccttc
     1921 gaggctttgc cgcctttttt gccgcccttc tttgcgggcg ccttgctagt cttcttgccg
     1981 cggcccgagc cgcccggctt cttgccgccg cccgaagact tgttaaccgt cgcccacgcc
     2041 ctgcgctcgg cctcgccctc cgacagcccg cgctcctcgt aaccctcttc
//
LOCUS       DASPKR010000015         2607 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1166845, whole genome shotgun sequence.
ACCESSION   DASPKR010000015 DASPKR010000000
VERSION     DASPKR010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2607)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2607
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1166845"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..241
                     /locus_tag="VD968_00365"
     CDS             <1..241
                     /locus_tag="VD968_00365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12878.1"
                     /translation="GSLTVRVEFKSGGAMTNNINVESFDLTGIFAALAREDFDRAANL
                     ARSLKSESPRSVATLAVARTALEKKGERAAALPED"
     gene            241..2169
                     /locus_tag="VD968_00370"
     CDS             241..2169
                     /locus_tag="VD968_00370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12879.1"
                     /translation="MMKGTRAAALLALALLPAAPPAAAQQQQSPPKTVKAGPKKSAPA
                     AEADPMAEIRRTTAVSLVNSLADDARMFRDPVLRARVQARSADALWETDRERAVALFR
                     RAWDEAESADAEAERRVAEERRRQERERGHFSIQLPPSLRTEVLRLASKRDRALGEEF
                     LKRLEAKRDEASGTTIDEPTDGDVDRHTSGATRRTDPFEAPAPIAKRLRLAIQLLQDG
                     DTERAIQFADPALGQVTGIALEFLAKLRQKNAKAADERYAALVGRAGADPASDANTAS
                     LLSSYLFTPSLFMTFTPTGGSSGNSWARDFPAPADISPQLRAAFFRAAAAILLRPTPT
                     PDQDRTSSGRAGWHMVIARLLPLFDHFAPDFSPGLRAKMASLAPDTPEGARSPRNNAL
                     TRGIIPEDPNRDRLQETLNRLPNAKTSAERDAVYVDAVFDALRQKDSRLEEFLNKIED
                     AELRQRLRAYIDYEAAQAAVRDKDDREALRLARSGSLTAIQRAWVLTEVARLIAKQEQ
                     GRAVELLDEALAEAKERIDAASPERASALVAIATQLISLDRARAWEVMLDAVKASNAA
                     RDYTGEDGRLTVRLQTKNMSMTSSNSAESFDLSGIFSTLAREDLQRAIDLARGFDGES
                     PRAVATLAIARSVLDAKK"
     gene            2273..>2607
                     /locus_tag="VD968_00375"
     CDS             2273..>2607
                     /locus_tag="VD968_00375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12880.1"
                     /translation="MNRTKWVERKFEFNLPVGVFPCVLERLRGTPARLEEMVRAVPAE
                     LLTARAGEAWTIQEQVGHLLDLDELHEGRLEDYAARLETLRPADMTNRKTYEADHNSA
                     PVERLLAEFR"
BASE COUNT          441 a          926 c          881 g          359 t
ORIGIN      
        1 gggcagcctg accgtccgcg tcgagttcaa gtcgggcggg gcgatgacga acaacataaa
       61 cgtggagagc ttcgacctga cgggcatctt cgcggcgctg gcgcgcgagg acttcgaccg
      121 cgctgccaac ctcgcgcgct ctctgaagag cgagtcgccg cgctctgtag ccacgctcgc
      181 cgtcgcgcgc acggcgctgg agaagaaggg cgagcgggcc gccgcgctcc cggaggattg
      241 atgatgaagg ggacgcgggc cgcggctctc ttggcactcg cgctgctgcc ggcggcgccg
      301 cccgccgccg cgcagcagca gcagtcgccg cctaagacgg ttaaggccgg gcctaagaag
      361 tcggcgcccg cggccgaggc cgacccgatg gcggagattc gccgcacgac ggccgtttcg
      421 ctagtaaact ccttggccga cgacgcgcgc atgttccgtg acccagtcct tcgcgcgcgc
      481 gttcaggcgc gctcggcaga cgccctctgg gagacggaca gggagcgcgc tgtcgcgctc
      541 ttccgccgcg cgtgggacga ggccgagtcg gcagacgccg aggccgagcg gcgcgtggcc
      601 gaggagcgcc gccggcagga gcgcgagcgc ggccacttct cgattcaact gccgccgagc
      661 ctacgcaccg aagtcctgcg gctcgcgtcg aagcgcgacc gcgcgctcgg cgaagagttc
      721 ctcaagcgcc tcgaagcgaa aagggatgag gcgtcgggga cgaccataga cgagccgacc
      781 gacggcgatg ttgaccggca caccagcggc gccacgcgcc gcacagaccc cttcgaggcg
      841 cccgcgccca tagccaagcg cctgcgcctc gccatacagc tcctacagga cggcgatacg
      901 gagcgcgcca tacagttcgc agacccggcg ctcgggcagg tgacggggat agcccttgag
      961 ttcctcgcta agctgcggca gaagaacgcg aaggccgccg acgagcgcta cgccgcgctc
     1021 gtcgggcgcg ccggcgcaga ccccgcgtct gacgccaaca cggcgtcgct gctttcgtcc
     1081 tacctcttca cgccttcgct cttcatgacg ttcacgccca ccggcgggtc gagcggcaac
     1141 tcctgggcgc gcgacttccc cgcccccgcc gacatctcgc cgcagctccg cgccgccttc
     1201 ttccgcgcgg ccgccgcgat actccttcgg ccgacgccta cgcccgacca ggacagaacc
     1261 tcctcgggcc gcgccggctg gcacatggtg atagcgcggc tgctgcctct cttcgaccat
     1321 ttcgcgcccg acttctcgcc gggccttcgc gcgaagatgg cctcgctcgc gcccgacacg
     1381 cccgagggcg cgcgcagccc gcgcaacaac gcgctcacgc gcggcatcat ccccgaagac
     1441 ccgaaccgcg accgattgca ggagacctta aaccgcctgc cgaacgcgaa gacctcggcg
     1501 gagcgcgacg ccgtctatgt tgacgccgtc ttcgacgcgc tgcggcagaa ggactcgcgc
     1561 ttggaagagt tcctgaacaa gattgaggac gccgagcttc gccagcgcct gcgcgcgtac
     1621 attgactacg aggcggcgca ggcggccgtg cgcgacaagg acgaccgtga ggcgctcagg
     1681 ctcgcgcgct ccggcagcct cacggcgata cagcgcgcgt gggtgctcac ggaggtcgcg
     1741 cggctcatcg cgaagcagga gcagggccgc gccgtcgagc tgcttgacga agcgctcgcc
     1801 gaggcgaagg agcgcataga cgcggcctcg cccgagcgcg caagcgccct cgtcgccatc
     1861 gccacgcagc tcatctcgct cgaccgcgcc cgcgcgtggg aggtgatgct cgacgccgtc
     1921 aaggcttcca acgccgcgcg cgattacacg ggcgaggacg gcaggctgac cgtccggctc
     1981 cagactaaaa acatgtccat gacttcgagc aacagcgcgg agagcttcga cctgtcgggc
     2041 atcttctcta cgctcgcgcg cgaagacttg cagcgcgcca tagacctcgc gcgcggcttc
     2101 gacggcgagt cgccccgcgc cgtcgccacg ctcgccatcg cgcgctccgt gctcgacgcc
     2161 aaaaagtagc gaagtgaagc aggggaatcg tgaaaggggc ggcgggccga acacccgccg
     2221 ccccttcgtc gttttaatgt ttatgctttc acaacggagg tgagcggccg agatgaacag
     2281 gacgaagtgg gtcgaaagga agttcgagtt taacttaccc gtcggcgtct tcccgtgcgt
     2341 tttggagcgg ctgcgcggga cgcccgcgcg gctcgaagag atggtgcgcg ctgtgccggc
     2401 cgaactgctg acggcgcgcg cgggcgaggc ttggacgatt caggagcagg tcggccacct
     2461 gctcgacttg gacgagctgc acgagggcag gctggaagac tacgccgcgc ggctcgaaac
     2521 tctgcggccg gccgacatga ccaaccggaa gacttacgag gccgatcaca actccgcgcc
     2581 cgtcgagcgg ctcctcgcgg agttccg
//
LOCUS       DASPKR010000016         2198 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1683830, whole genome shotgun sequence.
ACCESSION   DASPKR010000016 DASPKR010000000
VERSION     DASPKR010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2198)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2198)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2198
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1683830"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(268..1086)
                     /locus_tag="VD968_00380"
     CDS             complement(268..1086)
                     /locus_tag="VD968_00380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12881.1"
                     /translation="MQQGRTRLLPALLSALTLALAASTAAAQTSKSERLSEADDAAHI
                     LKEAADEPAAAAAVGEGRVERAGASLSIAEARPFTEFLEGEGPAPQSQGSARTYTPLT
                     PGQKMRRAFKSAFLDPTAYAVAAFTAGLTQLGEDDLPHKDTEDKVADWGSRTARNYGR
                     LATRRIFVGGVYPVIFKQDPRYERSPKKGFGSRTLHAISRVFVTRGDNGNLQPNWSRF
                     AGTATAHGLANLWEHSTPGHDRVGWDATLRRIPRSFLFDALNNIVFKEFLPDLF"
     gene            1264..>2198
                     /locus_tag="VD968_00385"
     CDS             1264..>2198
                     /locus_tag="VD968_00385"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE12882.1"
                     /translation="MYFKQFYLGCLAHASYLIGSGGEAAVVDPQRDVDEYVREAADRG
                     LKIKYVVETHLHADFVSGHRELAARTGAEIVFGERAGASFPHRAVRDGDELRVGKVVL
                     RFMETPGHTPESVSVLVIDTEVSPEPQKVLTGDTLFVGDVGRPDLAGARGYTPEMMAG
                     MMYESLHGKLLKLADAVEVWPAHGAGSMCGRNISKETSSTIGEQRRFNYALAPMPKDE
                     FVRMMTTDLAEPPPYFAKDAEINRAGAPALKELPRPRALSPREAASLVNQGHAVLDVR
                     LAAEFGAGHVPGSVNIGLGGQFASWAGTLLQIGTPL"
BASE COUNT          332 a          732 c          776 g          358 t
ORIGIN      
        1 gatagcatcg cacaaatgac catctgatgg aagcggccga ggcgtccggg cttcaacttc
       61 aaggcccgca aatacctgac gctctcaccg gcgccccggc cccgaaaggc tcgggcggcg
      121 ccacatagtc tgtgctcgcc ctttacgggg ccgagttgga gaagcccgag gccgaggggc
      181 gcgtgggcga ccgcctcgcc gtggggctca cgtccttccg cgccgtcctt gacacgaata
      241 gttgagcccg ccccgccgcc ttcgacgcta gaacaggtcg gggaggaact ctttgaagac
      301 tatgttgttg agcgcgtcga agaggaacga gcgcgggatg cggcggagcg tggcgtccca
      361 gccgacgcgg tcgtggcccg gcgtgctgtg ctcccagagg ttcgcaagcc cgtgcgccgt
      421 cgcggtgccg gcgaagcgcg accagttcgg ctgaaggttg ccgttgtcgc cgcgcgtgac
      481 gaagacgcgg ctgatggcgt gcagcgtccg gctgccgaag cccttcttgg gcgagcgctc
      541 gtagcgcggg tcttgcttga agatgacggg atagacgccg ccgacgaata tcctgcgggt
      601 ggcgagcctg ccgtagttgc gcgccgtgcg cgagccccag tcggcgacct tgtcctcggt
      661 gtccttgtgc ggcaggtcgt cctcgccgag ttgggtcagc cccgcggtga aggccgcgac
      721 ggcgtaggcc gtcgggtcga ggaaggccga cttgaaggcg cggcgcatct tctgccccgg
      781 cgtgagcggc gtgtaagtgc gcgccgaccc ttgcgactgc ggggcggggc cttcgccttc
      841 gaggaattcc gtgaaggggc gggcttcggc tatggagagc gaggcgcccg cgcgctcgac
      901 tcgcccctct ccgacggccg ctgccgcggc cggctcgtcg gcggcctcct taagaatgtg
      961 tgcggcgtcg tcggcttccg agaggcgctc cgacttactc gtctgcgcgg cggcggtcga
     1021 ggccgcgagc gcgagcgtca gggcggacag gagggccggg agcaagcggg tgcgtccttg
     1081 ttgcatcgtc agtttttctc cgtcgggcgt tggttcgttt gagcgtccag ggcgcattct
     1141 agcgcaagcg cgcgcaaacg gcacgttgtc taaaatcgcg gggaggaata gaatccccgc
     1201 gagcgcctct ccggcggcgg ccgtcgccgc ctccgccaca ccgcaaccga ggagtcctac
     1261 gcgatgtact tcaagcagtt ttatctcggc tgcctcgcgc acgcttcata tttgatcggc
     1321 tcgggcggcg aggccgccgt cgttgacccg cagcgcgacg ttgacgagta cgtgcgcgag
     1381 gcggccgacc gtgggcttaa aatcaagtac gtcgtcgaga cgcacctgca cgccgacttc
     1441 gtgagcggcc accgcgagct ggccgcgcgc acgggcgccg agatagtctt cggcgagagg
     1501 gcgggcgcct ccttcccgca cagggcggtg cgcgacggcg acgagcttcg cgtggggaaa
     1561 gtcgtcctca ggttcatgga gacgccgggc cacacgcccg agagcgtctc cgtactcgtc
     1621 atagacaccg aagtctcgcc cgagccgcag aaggttctca caggcgacac gctcttcgtc
     1681 ggcgacgttg ggcggcccga cctcgcgggc gcgcgcggct acacgcccga gatgatggcc
     1741 gggatgatgt acgagagcct tcacggcaag ctcctcaagc tcgccgacgc cgtcgaggtg
     1801 tggcccgcgc acggggccgg ctcgatgtgc gggcgcaaca tctcgaagga gacttcctcg
     1861 accataggcg aacagcgccg cttcaactac gcgctcgcgc cgatgccgaa ggacgagttc
     1921 gtccgaatga tgacgacaga cctggcggag ccgccgccct acttcgctaa ggacgcggag
     1981 ataaaccgcg ccggcgcccc cgccctcaag gagctgccgc gcccgcgcgc tctctcgccg
     2041 cgggaggccg cctctctcgt caaccagggc cacgcggttc tcgacgttcg cttggccgcg
     2101 gagttcggcg cgggccacgt ccccggctcc gtcaacatcg gcttgggcgg gcagttcgcc
     2161 tcatgggcgg gcacgctctt gcagataggc acgcccct
//
LOCUS       DASPKR010000017         4517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_131683, whole genome shotgun sequence.
ACCESSION   DASPKR010000017 DASPKR010000000
VERSION     DASPKR010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4517)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4517
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131683"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..767
                     /locus_tag="VD968_00390"
     CDS             <1..767
                     /locus_tag="VD968_00390"
                     /inference="COORDINATES: protein motif:HMM:NF016165.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transferrin receptor-like dimerization
                     domain-containing protein"
                     /protein_id="HYE12883.1"
                     /translation="FLQHLGIASLNLGFGGEDGGGSYHSVYDSFDHYTRFGDPNFDYG
                     VALAQVAGRAVLRLANADVLPLDFSNYAETVGRYVNEVSRLADDTREEIAEKNRRLAE
                     RTFEAVSDPTETFVAPRAEPPAPHLNFAPLRNALASLQASAARYESARGGPPARQALA
                     RRETKGALNAILMRVERAMTRDEGLPRRPWFKHHVYAPGFYTGYGVKTLPGVREAIEQ
                     HDWREADEQIVIAARAIESVAAEIDRAAALLAPAAR"
     gene            836..2170
                     /locus_tag="VD968_00395"
     CDS             836..2170
                     /locus_tag="VD968_00395"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE12884.1"
                     /translation="MYRHSTFKLVLLTVALTLAVTAIVIVVWEQLLRPPFFAWVEARY
                     PGEVHTRFRWNLQQRVEHFFISAMVDVFVVTLLLGLVNRKQRRLEAEEDRYRTLFEHA
                     NDGIAIMRADDHRIVEVNERFAAIVGVEAAQLAGRRFEDLGCETPDGAPAVLADSGEQ
                     EIIVCRPSGEALPALASANTLDIGGKRLVILIVRDLAERKRLEREREAMQAQLARNEK
                     AAALGQMAAQVAHEVNNPLAGLRLYTLHFKQRVAAKLPADELALIDKIVGGVERLSVV
                     TGQILDFARPLRLSPRRVNVVRVVEDALDLLGPHAAAAGVTVAREFGAPEIEATLDET
                     TFSSAIFNLALNAVQAMAEGGAGEKKLTVSARVSGGVLGVVVEDTGPGMSPEEVARAF
                     EPFYTTKSKGLGLGMPYARKVVEEHGGSMRVEGRAGAGTRITINLPAEGRGA"
     gene            2167..3597
                     /locus_tag="VD968_00400"
     CDS             2167..3597
                     /locus_tag="VD968_00400"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE12885.1"
                     /translation="MTARAGRVLIVDDEASVTDALSLILGGQGYVVETADSVAAAEEA
                     LRRAPQLPDLVFVDLRLPGGSGIDLLERIKAEGPDTEVILMTAHGSLDLAIEAIKKGA
                     FYYLEKPFTPDQVLTLAARAGQLVAVRRENALLRRTFVGESEFLGIVGRHAKMQRVYE
                     VIRAAAPSSASVLIEGESGTGKELVASALHLHSPRAEKPFIRINCAAIPRDLLESELF
                     GYRRGAFTGADRDKRGLIEAAAGGTLLLDEVTEMPLHLQSKMLRVLQERRVRRLGDEQ
                     ETAVDFRLVSATNQDTAAAVKEGLLRQDLYFRLSTVRVRLPPLREHLDDLPLLAERFL
                     ARYGEMNNKAVRAIAPDAYSLLYRYDWPGNIRELESAIEHAVLFCRGATVRPEDLPEH
                     IQGAQSAQAPFFIPPAATLEEIENEAIRLTLERTGGNIKRASEILNVHRPTLYRKLRR
                     MGLITSAADRPDSETHPGDDEPESAP"
     gene            complement(3774..>4517)
                     /locus_tag="VD968_00405"
     CDS             complement(3774..>4517)
                     /locus_tag="VD968_00405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12886.1"
                     /translation="TLSSSNAGVASVPASVNVAAGATSATFTVTTVGVNAATTVTVTA
                     AYGGATRTATLTVQPATTPPTAALSSLALNPTSVNGGGASQGTVTLTAAAPSGGALVT
                     LSSSSASASVPSSVTVPAGATSAGFTVTTQAVSSSVTATITAAYGGATRAATLTVNAQ
                     APPATDTVAIQRAEYDSDKRELRVEATSSNATAVLRVYVASTGQLIGTLTNNGGGRYG
                     GQFSVSTNPQTIVVRSSLGGSATRAVTAN"
BASE COUNT          706 a         1607 c         1525 g          679 t
ORIGIN      
        1 cgttcctgca acacctcggc atcgcctccc tgaacctcgg cttcggcggc gaggacggcg
       61 gcggctccta ccactccgtc tatgactcgt tcgaccacta cacgcgcttc ggcgacccca
      121 actttgacta cggggtggcg ctcgcccaag tcgctggccg cgccgtcctc cggctcgcga
      181 acgccgacgt gctgccgctc gacttctcga actacgcgga gacggtcggc cgctacgtca
      241 acgaggtctc gcgcctcgcc gacgacacgc gcgaggagat cgccgagaag aaccgccgcc
      301 ttgccgagcg caccttcgag gccgtctcag acccgaccga gacgttcgtc gcgccgcgcg
      361 ccgaaccgcc cgccccgcac ttaaacttcg cgcccttgcg gaacgcgctc gcctcgcttc
      421 aggcgagcgc cgcccgctac gagtccgccc gcggcggccc cccggcgcgg caggcgctcg
      481 cgcggcgcga gacgaagggc gcgctcaacg cgatactcat gcgcgtcgag cgcgcgatga
      541 cgcgcgacga gggcctcccg cgccggccct ggttcaagca ccacgtctat gcgcccggct
      601 tctacaccgg ctacggcgtg aagactttgc ccggcgtgcg cgaggccata gagcagcacg
      661 actggcgcga ggccgacgag cagatagtca tagccgcccg cgccatcgaa tcggtcgccg
      721 ccgagataga ccgcgccgcc gctctcctcg ccccggccgc acgctgagcc gatggcttat
      781 gtgcgcgcgc gactcagttc ggcagcgcgc cgccggacgg gcggctgaga aggacgtgta
      841 ccgacactcg accttcaagc tggtgctgct taccgtggcg ctcaccctag cggtgacggc
      901 catcgtgatc gtggtttggg agcagttgtt gaggccgccc ttcttcgcgt gggtcgaggc
      961 gcgctacccc ggcgaagtcc acacccgctt ccgttggaac ttgcagcagc gcgtcgagca
     1021 cttcttcatc tcggcgatgg tggacgtttt cgtcgtgacc cttctgctcg ggctggtcaa
     1081 ccgcaagcag cgccgcctcg aagccgagga agatcgctac cgcacgctct tcgagcacgc
     1141 caacgacggc atcgccatca tgcgcgccga cgaccaccgc atcgtcgaag tcaacgagcg
     1201 gttcgccgcc atcgtcggcg tcgaggccgc gcagttggcc ggccgccggt tcgaagacct
     1261 ggggtgtgag acgcccgacg gcgcgccggc tgtgctggct gactccggcg agcaggagat
     1321 catcgtttgc aggccgtcgg gcgaagcgct cccggccctc gccagtgcca acacgctcga
     1381 catcggcggg aagcggctcg tgatactcat cgtccgcgac ctcgcggagc gcaagcgttt
     1441 ggagcgcgag cgggaggcca tgcaggcgca gctcgcgcgc aacgagaagg cggcggcgct
     1501 cggccagatg gcggcccaag tcgcgcacga ggtcaacaac cctctggcgg ggctgcgtct
     1561 ctacacgctt cacttcaagc agcgggtcgc cgccaagctg cctgccgacg aactcgcgct
     1621 gattgacaag atcgtcggcg gcgtcgagcg gctcagcgtg gtaacggggc agatactcga
     1681 cttcgcgcga ccgctccggc tctcgccgcg gcgggtcaac gtcgtccgcg tcgtcgagga
     1741 cgcgctcgac ctgctcgggc cgcacgcggc ggcggccggc gtcacagtcg cgcgcgagtt
     1801 cggcgcgccc gaaatcgaag ccacgctcga cgagacgacg ttctcgtccg ccatcttcaa
     1861 cctcgcgctc aacgctgtgc aggcgatggc cgagggcggc gcgggcgaga agaagctgac
     1921 ggtctcggct cgcgtgtccg gcggggtgct cggcgtcgtc gttgaggaca cggggccggg
     1981 gatgtccccg gaggaggtcg ccagggcgtt cgagcctttc tacacgacca agagcaaggg
     2041 cctcgggctc gggatgccct acgcgcggaa ggtggtggag gaacacggcg gctcgatgcg
     2101 ggtcgagggg cgggccggcg cggggacgcg aatcacaatt aacctgccgg cggaagggag
     2161 gggcgcatga cggcgcgggc cggcagagtc ctcatcgtgg acgacgaggc gagcgtgacc
     2221 gacgcgctgt cgcttatact cggcggtcaa ggttacgtgg tcgagacggc cgacagcgtc
     2281 gccgccgccg aggaggcgtt gcggcgagcg ccgcaactcc ccgacctcgt cttcgtagac
     2341 ctgcgcttgc cgggcgggag cggcattgac ctgctcgagc gaatcaaggc cgaaggcccc
     2401 gacaccgagg tcatcctgat gaccgcgcac ggctcgcttg acctcgccat cgaggcgatt
     2461 aagaagggcg cgttctacta cctcgaaaag cccttcacgc ccgaccaggt gctgacgctg
     2521 gccgcgcggg ccgggcagct cgtcgccgtc cggcgcgaga atgccctgct caggcgtacc
     2581 ttcgtcggcg agagcgagtt cctcggcatc gtcgggcggc acgcgaagat gcagagggtc
     2641 tacgaagtca tccgcgccgc cgcgccctcg tcggcctcgg tgctcattga gggcgagtcg
     2701 gggacgggca aggaactggt cgccagcgcc ctccacctgc atagcccgcg cgccgaaaag
     2761 cccttcatcc gcatcaactg cgccgccata ccgcgcgacc tccttgagtc ggaactgttc
     2821 ggctaccggc gcggcgcgtt cacgggcgca gaccgcgaca agcgggggtt gatcgaggcg
     2881 gcagccggcg gcacgctcct cctcgacgag gtgacagaga tgcccctgca ccttcagtcg
     2941 aagatgctgc gcgtgttgca ggagcggcgc gtgcgacggc tcggcgacga gcaggagacg
     3001 gccgtcgatt tccgtctcgt ctcggcgacc aaccaggaca cggccgccgc ggtcaaggag
     3061 gggctgctgc gccaagacct ctacttccga ctgagcacgg tcagggtcag gctgcccccc
     3121 ttgcgcgagc acctcgacga cctgccgctc ctggccgagc gcttcctcgc gcgctacggc
     3181 gagatgaaca acaaggccgt ccgcgccatc gcgcccgacg cctactcgct cctgtaccgc
     3241 tacgactggc ccggcaatat acgcgagttg gagagcgcca tcgagcacgc cgtcctcttc
     3301 tgccgcggcg cgacagtccg ccccgaagac ctccccgaac acatccaagg ggcgcagtcg
     3361 gcccaagctc ctttcttcat cccccccgcg gcgacgcttg aggagataga gaacgaggcc
     3421 atccgcctga cgctggagcg cacgggcggc aacatcaaac gcgcctcgga aatcctcaac
     3481 gtccaccgcc cgacgctcta ccgcaagctg cgcaggatgg gcctcatcac cagcgccgcc
     3541 gaccgccccg actccgaaac acatcccggc gacgacgaac ccgagagcgc cccttgagtc
     3601 gcgcggaaaa gcatttctta actgcgcgag agccaccctt tccgagtcgc tgactgatta
     3661 aaactcttgt gagcccgtgg agcttcgccc ggcccggcgt ggccgcggcg cgggagaacc
     3721 tctcttctcc cgcgccgccc ttgcgtcggg gcgcatcgtc ccggcctgcc cttctaatta
     3781 gccgtgacgg cgcgcgtcgc cgaacccccg aggctactgc ggacgacgat ggtctgtggg
     3841 ttcgtgctga cggagaactg tccgccgtac ctgccgccgc cgttgttggt gagggtgcct
     3901 atcaactggc ccgtggacgc cacgtatacg cgcagcacgg cagtcgcgtt gctgctcgtc
     3961 gcctccacgc gcagttctcg cttgtccgag tcgtactcgg cgcgctggat ggcgacggtg
     4021 tcggtcgcgg gcggcgcctg cgcgttaacc gtcagagtcg ccgcccgcgt cgcgccgccg
     4081 taggcggccg tgatcgtggc cgtgactgac gacgagacag cctgcgtcgt gaccgtgaag
     4141 ccggcgctcg tcgcgcccgc cgggaccgtg acgctcgacg gcacggaggc cgacgcgctc
     4201 gaactcgaaa gcgtgacgag ggcgccgccc gaaggggccg ccgccgtcag cgtcactgtg
     4261 ccttgcgacg cgccgccgcc attcacgctc gtcgggttga gcgcgagcga tgacagggcc
     4321 gccgtcggcg gagtcgtcgc gggttgcacc gtgagcgtcg ccgtccgcgt cgcgccgccg
     4381 taagcggcgg tgacggtgac ggtcgtcgct gcgttgaccc cgacggtcgt cacggtgaaa
     4441 gtcgcgctcg tcgcgcccgc cgcgacgttg acgctcgcgg gcacagaggc cacgccggcg
     4501 ttgctgctcg aaagtgt
//
LOCUS       DASPKR010000018        20875 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1813667, whole genome shotgun sequence.
ACCESSION   DASPKR010000018 DASPKR010000000
VERSION     DASPKR010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 20875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20875)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20875
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1813667"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(475..945)
                     /locus_tag="VD968_00410"
     CDS             complement(475..945)
                     /locus_tag="VD968_00410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12887.1"
                     /translation="MTSNRKGLLKGASLLAFALLLAAPAAALAQVGYRDRQDRRQERR
                     EDRQERREERREERQERREERREARRGYGWGNYGGWGGSAQLRQTALNAGYNEGIKEG
                     RKDRQRGERFNFTDESDYRNATKDYSSRLGSRALYQRYFRQGFENGYRDGWNGY"
     gene            complement(1205..4741)
                     /locus_tag="VD968_00415"
     CDS             complement(1205..4741)
                     /locus_tag="VD968_00415"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE12888.1"
                     /translation="MKSPRPSHGALFKSLFVLFALAAFALALMAGRAGPPPASAQGPF
                     TGFRNFESPQVHPLAVTPDGKRLLAVNSPENRLSVFQLTGGAPVLTAEIPVGLEPVSV
                     AARSDREAWVVNWLSDSVSVVDLVTGNVTQSFDVGDEPTDVLFAGAGNGKAFVCVSGL
                     MQVKVFDAAAPTSSAPQVVQVRGKQPRSLARDAAGSRVFVSVFESGNQTAVVPEPVVT
                     RNGGLPSPQPAMAAGLPPAPRTGLVVKWNGTGWVDERGDARWTPAIRFSLADVDVAVI
                     DAATAAVTAELRGVGTLIGNAAYDPAGARLLVVNTDSQNFTRFEPNLRGRFIRTRVSS
                     VNPSDGASAAFDLNPHINYDDPAGSDAERAQSLGLPSDIARASDGTIYVAALGSAKVG
                     VLDPSGSVQSRVPVGQGPTGLALDEQRSRLYVLNRFEQTVSVVDTAARSELTRVAVGF
                     NPEPTEVREGRRFLYDTSNSAHGDVACASCHPGGHRDGLVWDLGDPQGKVDVINNPAG
                     GGSLFIRLNPVINFHPMKGPMMTQSLRGIFDSRQMHWRGDRNNIGEFNPTFVTLLGRP
                     RLLAPEEMAAFEAFLRTLVYPPNPLKNIDSSLPTDVPGFGGNAQRGSLLFNGSKLVAG
                     VEFCGVCHDSGLSGSNSVIAPASLLREPQDFKTPQLRGLYQKTGMENTPGEKLTAFGF
                     VHDGTIPDLMTFLRHPLFTFANDTDRRDVAAFLLTFDTGVPSILGVQTTVNAANKNSP
                     EVAARLDLFAAQVLMNRCDLVVRGIYKGEHRGFLYSKLTRKFETDRAGEAPLTRQELL
                     DAVVPGAELTFMGVLPGRGRRLSIDTDADGVLNGDAPPKSINVSGRVTDGSGNGVAGV
                     TVLLSGSQSATTETNADGRYFFGYVSTTGAHFVTPWKEGLSFGPAARELVNPASHQTA
                     DFTAAPAAAIDTSQFFVAQHYRDFLAREPDPAGLAFWAGGIDACGPDAACREVRRVNT
                     SAAFFLSIEFQETGYLVYRTYKAAFGDIAGKPVPVRLAQLTEGTQRIGQGVRVGIGDW
                     QGQLEANKQAFFLEWAQRPEFIERYPAGVSAQEFVGALDANAGGVLTSAEREALVAQL
                     ASNNTTEGRASVLRQVAENAELARREFNKAFVLMQYFGYLRRNPDDPPDTGMGGFNFW
                     LGKLNQFGGNYIEAEMVKAFISSIEYRNRFAQ"
     gene            complement(4907..7876)
                     /locus_tag="VD968_00420"
     CDS             complement(4907..7876)
                     /locus_tag="VD968_00420"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE12889.1"
                     /translation="MKRPVLTTKGWALLIVAAVLVAAGTLNFAQRLTHTAPPTDGIYW
                     EQTSRGIIAGQTAPGTANARKGIFGVQPGDRLLGIRLGEGRGDEVTSVSDVQIYLEEA
                     GRGGRIVYVIERLDASGRAAVYECEIDGLAPPPAWTRGSLYINLIGVVYLLVGLFVFF
                     KQGERAPYVLHFTALCLVAFVFHFYKPYGGYEDFDLSVSFMDGAALALFAPVFLHFCA
                     IYPARLRFSERRPWLVLLLYAPAAAIVAAQAVSLLPVVSPRLHFVSGLLPDDFSARVW
                     VAEVACFSAALVAGSFMLVRRFLKSESAIVRQQLKWVVWGSVLAVTPFTLLYAAGYLF
                     GAGYASTYLTETTRRWIEDGAVLPLVLIPLTFGNSVVRYRLMDVDMVVRRTAVYALTT
                     LALALMIGSVVYVAGLYAFGGEVITPGVISMRVIVAVAAMAVIVMTAAPLKNFLQERI
                     DRFFYGESYDLRAGLLDFGRTLSATTSLEPLLDSLVGRLQQVLGVERVAIFIEDSRAP
                     AGYRVARAAGLSNDLIVPPDFREMIRARSAEDGIVRADGLDLPADSNGFVRRSLHYYV
                     PCVVRGRMVAVIGLGRSTGGALLSSEDLEILRTVSGYVAVAIENSLLYQEQKERAEEL
                     TLLKEFNESIVESINVGILAVDASGRVTACNSTLEEMLGLRRDEATGSRVEELFAEDF
                     SETLRQVLGESGWELSELRHIYKLHTATRRGRPLILNVALAPLKRSDSTEHIGALVVL
                     EDVTSRVRLEEQLQQREKLSSIGLLAAGVAHEINTPLTGVSSYTQMLLGMLADTDPKH
                     ALLQKISRQADRATGIVNNLLNFSRTGNVMDFADVDVNRVLDDTLQLLEPQLRHGRIE
                     IERDYSGDLPRVFGNAGKLQQVFTNLLLNARDAIPDGGRIALSTTLDGPDAVRVVIAD
                     NGIGIAPENVARIYDPFFTTKGVGKGTGLGLAVSYGIVQEHSGHIAVESAPGRGTTFR
                     ITLPASGARARLQAASD"
     gene            complement(8208..10007)
                     /locus_tag="VD968_00425"
     CDS             complement(8208..10007)
                     /locus_tag="VD968_00425"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HYE12890.1"
                     /translation="MRKFYWRTSLVLFAALALSQAGLAPGALAAAGAPDRRASGLGTI
                     SGTILDGRGKPVAGALVKILRDGLNEVVRETKSSADGRFTTRVTPGRYLVRALAQGFT
                     PATFTAVQVSPSTELVYQFNLQPAGEGRTEPERRADRDDPKFKIRSQQIRRSVFHAGE
                     AETGVADEVAAEETEGAEGVAAAAEDENVAGKARVEGYVETFVADSANPELGGYAGLN
                     FAFKTPVTRDLDMIFAGQTGEFERLEATARLRAGARHRVSATFGGARLPVMNSAAVDS
                     TGTAGLALGLAGDDKLGQFSVRAVDEWVVRDGIVLVLGLDYSRFFGAGGDDSLTPRLG
                     VGFDVNARTRLHAAYAPGNSPATRADAETFEDDTVVFKETPGQAVALVDGRAVMERTS
                     RLEFGVERVIGENSSVEATAFFDTVDDRGVALFSSPLAGLTDAGSAALLSIANQQGGA
                     RGLRVVYTRRISQRLKASAGYAFGRGQQLSPEGFTSPEQLFQDAFFQTAAAQLDASVA
                     DGMTVRTVLRFSPRAAVFAVDPFAGRLAVYDPSLSILVTQELPNFGLPVRAQATLDAR
                     NVLDTLTGVEDGENFMSLGALRRTVRGGISLRF"
     gene            10357..11649
                     /locus_tag="VD968_00430"
     CDS             10357..11649
                     /locus_tag="VD968_00430"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE12891.1"
                     /translation="MSTPEVTLEQVRTTRLPGGLTVLTERMPALRSCTVGVWARRGSR
                     HEAAEWNGVCHFIEHAVFKGTETRTALDIAVESDRLGGHFDAYTTHELTGFAMKVIDS
                     ALPAAFDLLSDMLARPRFDEEELRREQKVIIEEMKMVEDTPDEFLAEIFSAAYFPGHS
                     LGRPIEGTPETVSTFGSGRTREYHARAYAPRNLVVAAAGNVEHGRLVELAARAFEGRG
                     LAAGDDVGDGGPPPAAAPILIQRKKELEQAHLILAAPFPSGRSADRYAAGLLSSIIGG
                     GTSSRLWQRVREERGLAYSVGAAASHFTDAGVFQIYAGTSPEQLDEVLDLALAELRRA
                     VREPVGEDELRLVKDQAVASILLGLESTSARAGSLARQEIFHGRRIPPDEVIARIEAV
                     TPDDLQRLAREFFKTESLALGALGDLNGFKVERARLEV"
     gene            11664..12134
                     /locus_tag="VD968_00435"
     CDS             11664..12134
                     /locus_tag="VD968_00435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12892.1"
                     /translation="MKALLTTIALCALAAAQSGAAAGGVEVVGFDWKYDGYLPVETVR
                     NSKSATSTRVRRGTDYVFKYRAQATVKNAGAKAVKAVEWDFVFSEAEGGRELKRYKLR
                     SKQQVRPGATALLSEDVFIKPEESTRHISDGRRSVSVTRVEFSDGSEWRAEGKR"
     gene            12134..12958
                     /locus_tag="VD968_00440"
     CDS             12134..12958
                     /locus_tag="VD968_00440"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE12893.1"
                     /translation="MRLTVLGSGSTGNALLICAGGTRVLVDAGLSARETARRLALVGE
                     DVARLDGVIVTHEHGDHAGGLRVLLKSLACPVFISGATRDAYIRERVHNSSDEARKRA
                     DALRDRTEEISSSQDFRIGEIDFHPFTVPHDAADNFGFTATHRGVKVATLMDFGCVTT
                     LVAEQLKGCSAIVIESNHSRDMLKACPVYPWELKQRILSRTGHLSNEDVADWLRESFD
                     GSAAHIVLAHLSQRANNPHVAKLSAEMALSERGGLFKSAAQVTLSHPKEPTPWIEL"
     gene            12943..13446
                     /locus_tag="VD968_00445"
     CDS             12943..13446
                     /locus_tag="VD968_00445"
                     /inference="COORDINATES: protein motif:HMM:NF024609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4019 domain-containing protein"
                     /protein_id="HYE12894.1"
                     /translation="MDRAVKAEGGRQRTEGERREAGGRFNRPRAAFCLLLSAFLLSGC
                     AEERRPIPGGAQETIDRVTEDIAAGRHDKVYEEAAPEWRGAVGAEEHGRILERVRERL
                     GAVRGRTLHTGREQQSASAPLSGHTLELTYQTSFERGDATERFTLVEREGRWLLAGYF
                     VSAEALK"
     gene            13459..14763
                     /gene="purB"
                     /locus_tag="VD968_00450"
     CDS             13459..14763
                     /gene="purB"
                     /locus_tag="VD968_00450"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HYE12895.1"
                     /translation="MIERYTLPEMGALWSERNKFEKWLEVELAVCEAHAEMGTIPREA
                     VEEIKGRAAFTVERIREIEKTTDHDVIAFTTALAESIGEPARFVHYGLTSSDVVDTAN
                     ALLLRDACGLLLDKLDALASVLRRRAFEFRRTPQIGRTHGVHAEPTSFGLTFALWFDE
                     TRRNRARLERAREVVSTGKISGAVGAFAHLDPEVEERVCARLGLKAAPVSTQVIQRDV
                     YAEYLTTLAIVASSLEKFALQVRHWQRTEVREAEERFRAGQKGSSAMPHKRNPILSER
                     ICGMARVVRGYAVVGLEDVALWHERDISHSSAERVVLPDASIALDYMLAKTASLLDNL
                     VVYPERMLENLNLTRGLVFSGQLLLALTRAGVSREEAYAWVQRNAMRAWDEGGDFRAL
                     VLDDADITARLGRDAAARVFSLETYLRNVDAVFRRVFGESEG"
     gene            complement(14812..15231)
                     /locus_tag="VD968_00455"
     CDS             complement(14812..15231)
                     /locus_tag="VD968_00455"
                     /inference="COORDINATES: protein motif:HMM:NF021221.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HYE12896.1"
                     /translation="MQNPNYGGPPGSAVGKSSIGLDGNVAAAIGYIVGLLALVLIFIE
                     KDNRFVRFHAIQSVLYAALATVTFVVLSIVLTIISIALAFASETLAAISGLLWTLLFL
                     LLVLAHLGCLIYAAVKSYQGQTFKLPIVGSLAEKFTK"
     gene            15424..15669
                     /gene="purS"
                     /locus_tag="VD968_00460"
     CDS             15424..15669
                     /gene="purS"
                     /locus_tag="VD968_00460"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:NF004630.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HYE12897.1"
                     /translation="MRAKVYVTLKRGVLDPQGKAIHHSVELMGYEGVRDVRQGKFFEI
                     ALDDRLGDEAARDAAERMAKDVLSNPVIEDFRVEIER"
     gene            15666..16364
                     /gene="purQ"
                     /locus_tag="VD968_00465"
     CDS             15666..16364
                     /gene="purQ"
                     /locus_tag="VD968_00465"
                     /inference="COORDINATES: protein motif:HMM:NF024897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HYE12898.1"
                     /translation="MKFGVIVFPGSNCDHDAYHVVSKHVGQPVDFVWHRETDLSGYDA
                     VIIPGGFSYGDYLRAGALARFSPVMASVKEFAARGGLVLGICNGFQILCESGLLPGAL
                     IRNKELHFICQHVHVRVETTETPFTHRLKAGEVLHLPIAHAEGNYVCDDETYCELVRE
                     DRIVFRYSDAAGELKGEANLNGSRDHIAGICSRGRNVLGLMPHPERACEELLGSSDGL
                     GLFGSLAATLAAQA"
     gene            16572..16916
                     /locus_tag="VD968_00470"
     CDS             16572..16916
                     /locus_tag="VD968_00470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12899.1"
                     /translation="MEYLFWALAGWCGTPWRRRWPWPWPPGPDPDPRGPHPEPWGPSP
                     DPWIIIKVLGIVGGIVGGIIFDRVFDGTPLPARSVGWMAATSFGALIVGRVVSEVGSL
                     VIPSGARANTRG"
     gene            17098..17709
                     /locus_tag="VD968_00475"
     CDS             17098..17709
                     /locus_tag="VD968_00475"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HYE12900.1"
                     /translation="MKRLYAAALLAALSLTALPLAAAPHAAADETAAAKLAIGSTIED
                     FKLPDADGKEHSLSSLKGAKGTVIIFVSTDCPVSNAYNERMEKLATDYKSRGISVIGI
                     NSNATETASQVKEHAAARGLTFPILKDAGNRVADRLQARATPEAYVLDASNKLAYRGR
                     IDNSRDGKSITSSELRDALEAILAGRPVEKTEVSAFGCSIKRV"
     gene            17725..18333
                     /locus_tag="VD968_00480"
     CDS             17725..18333
                     /locus_tag="VD968_00480"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HYE12901.1"
                     /translation="MMKSPLLSSTSLLLLGAALVLGGGGASAQKAGAPGQGAKPAPAS
                     PAPKAKVEEIKEAGLKSLLERGPAAGRPLLVNFWATWCVPCREEFPDLVKIREHYPTE
                     ALDFVLVSLDDASDIATTVPEFIESMRASHMPSYLLNADDPNAAINLVDPGWRGELPA
                     TFLFDRQGKLTFKHMGRVKPPELRAAIEQAIAAKPQEPAAQP"
     gene            complement(18356..18898)
                     /locus_tag="VD968_00485"
     CDS             complement(18356..18898)
                     /locus_tag="VD968_00485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12902.1"
                     /translation="MGEFGRWILHEDQKEVFEAFFAGMVFLAFVLLSTLLLLPAGRAW
                     AVWSFAKGYWLFLVVLYLTAAALLLAQRYFRMDLYSHPDAYVISGLAVSGFLQVGWSA
                     FAALTVRGHTAGATVWAAAALYFVGLLSCYAALVSVGALYMGHIYRLTNAGLALLSYV
                     LFSLWPAAGRALYGWFFDLF"
     gene            19070..>20875
                     /gene="purL"
                     /locus_tag="VD968_00490"
     CDS             19070..>20875
                     /gene="purL"
                     /locus_tag="VD968_00490"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HYE12903.1"
                     /translation="MKSEVITPEVVAAHNLTPEEYARIRELLGREPTFVELGVFSVMW
                     SEHCSYKSSRAHLRRLPTEGPRVIVPPGENAGVVDVGDGWCAAFKVESHNHPSFIEPF
                     QGAATGVGGILRDIFTMGARPVASMNSLRFGTLSHPAHGRRNRALLAGVVAGIAHYGN
                     AFGVATVGGEVVFDDAYSLNPLVNAFALGLVRHDQIFFGKAAGVGNPVLYVGAKTGRD
                     GIHGATMASAEFDEEALEKRPTVQVGDPFLEKLLLEACLEAMRSGAVAGIQDMGAAGL
                     TSSSCEMAARAGNGIELDLSLVPQREEGMTPYEIMLSESQERMLIVAHGGRERQVVDI
                     FRKWDLDAVVIGRVTGTGSVVVIHGGERVADIPARFLTDEAPRYERPMRAPVRVAGTD
                     SQVPAAGGEVPANASVVNADELDEVLEAPSTVVAGAGHDEALRRLLASPNVASKEWVY
                     RQYDHMVRTNTAVLPGADAAVVRIKETRRALAMCLDGNGRYCAVSPREGARLVVAEAA
                     RNVVCVGARPLAITNCLNFASPERPEVMWSFSEVVDGMAEACRALGTPVVSGNVSFYN
                     ETEGRGIHPTPVVGMVGLVEDVRRVVTQGFKREGQL"
BASE COUNT         3430 a         7058 c         7184 g         3203 t
ORIGIN      
        1 aaggggcttc gcttctagcg ttcgcgctgc tactcgcggc gccgacggcc gcgctcgcgc
       61 aggtcggcta ccgtgacagg caggatcgcc ggcaggagag ccgctcgccc tgccgcgcct
      121 tcgcgcgtgg gcgcggcgct cctacgaacg cgccggcccc gagctcgcac gtcgcggcgc
      181 atacggccgc cagcgcgcac gcgcacacgc aggcgcgcac gaaggctctg cccgaaggaa
      241 tgctcttgtt cataaaggag agaacccgtc cccgtgagtc tcaggagcca aagcgctgtg
      301 agattatcac cgggagggat aaaagcaagg gttttgttcg cgggcggggg ccggggaatt
      361 atgcgctcaa aggctcacgt cacgccggcc gcttgcgggc gcggcagacg aaagggcggg
      421 ggcgagcctt tcgacacgcc cccgccctag tctgcgtcgc cgacggcgga actatcagta
      481 gccgttccag ccgtcgcggt agccgttctc gaagccctgg cggaagtagc gctggtagag
      541 ggcgcggctg ccgaggcgcg agctgtagtc cttcgtcgcg ttgcggtagt cgctctcgtc
      601 cgtgaagttg aagcgctcgc cgcgctggcg atccttgcgc ccctccttga tgccctcgtt
      661 gtagccggcg ttcagggccg tctgccggag ctgagccgag ccgccccagc cgccgtagtt
      721 gccccagccg tagccgcggc gcgcctcgcg cctctcctct cggcgctcct gacgctcttc
      781 acgacgctcc tcgcgcctct cctgccggtc ttcgcgccgc tcctgccggc gatcctgcct
      841 gtcacggtag ccgacctgcg cgagcgcggc cgccggcgcc gcgagcagca gcgcgaacgc
      901 cagaagcgaa gcccctttca gtaacccttt acgattgctt gtcatctcta tcccctttgt
      961 tgtttcaacg tctcgcactc cgctgtcgga gtgacctttt ctcgccggaa tggataacaa
     1021 gcaccgtgcc acacgcgcac tgtcactcaa acgccgataa agcgcgggca ttcaacgcgc
     1081 gcacggccct cggctatacg ataccgtacc cgaatgcgac cacaacgtgg acgctcaggg
     1141 cacatcggcg gggccgttca caaaacttta aatctgcgaa cccgaggcgc agtctcaata
     1201 ttcattactg cgcgaagcgg ttgcggtact cgattgacga gatgaaggct ttgaccatct
     1261 cggcctcgat gtagttgccg ccgaactggt tcagcttgcc gagccagaag ttgaagccgc
     1321 ccatccccgt gtctggcggg tcgtccgggt tgcgcctgag gtagccgaag tactgcatca
     1381 agacgaaagc cttgttgaac tcgcgccggg cgagctccgc gttctcggcc acctgcctga
     1441 gcacagatgc ccgcccctcc gtcgtgttgt tcgaggcgag ctgcgccacg agcgcctcgc
     1501 gctccgcgga ggtcagcacg cctcccgcgt tcgcgtcgag cgcgccgacg aactcctgag
     1561 cgctaacacc tgcggggtag cgctcgatga actcagggcg ctgtgcccat tcgaggaaga
     1621 aagcctgctt gttcgcttca agttgcccct gccagtcgcc tatgccgacg cggacgccct
     1681 gacctatgcg ctgcgtgccc tcagtcaact gcgcgaggcg gacggggacg ggcttgccag
     1741 cgatgtcgcc gaacgcggcc ttgtaggttc gatagacgag gtagccggtc tcctgaaact
     1801 ctatggagag gaagaacgcg gccgacgtgt tcacgcgccg cacctcgcgg caggcggcgt
     1861 cggggccgca ggcgtcaatc ccgcccgccc agaatgcgag gccggccggg tcgggctcgc
     1921 gcgcgaggaa gtcgcggtag tgctgcgcga cgaagaactg agacgtgtca atggcggctg
     1981 cgggcgcggc cgtgaagtcg gccgtctggt gcgaggcggg gttgacgagc tcgcgcgcgg
     2041 cggggccgaa gctcaggccc tccttccatg gcgtgacgaa gtgcgccccc gtcgtcgaga
     2101 cgtagccgaa gaagtagcgg ccgtccgcat tcgtctccgt cgtcgcgctc tgcgagcctg
     2161 agagcaggac ggtgacgccg gccacgccgt tgccgctgcc gtcggtgacg cgcccgctca
     2221 cgttgattga tttgggcggg gcgtcgccgt tgagcacgcc gtccgcgtcc gtgtctatgc
     2281 tgaggcgccg gcccctgccg ggcagcactc ccatgaaggt cagctcggcg ccggggacga
     2341 cggcgtccaa aagttcctgc cgcgtcagcg gcgcctcgcc cgcgcggtcg gtctcgaact
     2401 tccgcgtcag cttcgagtag aggaagccgc ggtgctcgcc cttgtagatg ccgcgcacga
     2461 cgaggtcaca cctgttcatc agcacctgcg ccgcgaacag gtctaggcgc gccgccactt
     2521 cgggcgagtt cttgttcgcg gcgttgacgg tcgtctgcac gccgaggatg gacggcacgc
     2581 ccgtgtcgaa cgtgaggagg aaggcggcca cgtcgcggcg gtcggtgtcg ttggcgaagg
     2641 tgaataacgg gtggcgcagg aacgtcatga ggtcgggaat cgtgccgtcg tggacgaagc
     2701 cgaaggccgt caacttctcg cccggcgtgt tctccatccc cgtcttctgg tagaggccgc
     2761 gcaactgcgg cgtcttgaag tcctgcggct cgcgcagcag cgacgcgggc gctatcacgc
     2821 tgttcgagcc ggagaggccg ctgtcgtggc acacgccgca gaactcgaca cccgcgacga
     2881 gcttggagcc gttgaagagc aacgagcctc gctgcgcgtt ccccccgaag ccgggcacgt
     2941 cagtcgggag cgaactgtca atattcttga gcgggttcgg cggatagacg agcgtgcgca
     3001 ggaacgcctc gaaggcggcc atctcttccg gggctaggag ccgcggccgc ccgagcagcg
     3061 tcacgaacgt cgggttgaac tcgccgatgt tgttgcggtc gccgcgccag tgcatctggc
     3121 gggagtcgaa gatgccgcgc aaggactgcg tcatcatcgg ccccttcatc gggtggaagt
     3181 tgatgaccgg gttgaggcgt atgaagaggc tgccgccccc ggcggggttg ttgataacgt
     3241 ccaccttgcc ctgcgggtcg cccaagtccc agacgagccc gtcgcggtgg cctccggggt
     3301 ggcagctcgc gcaggccacg tcgccgtgcg ccgagttcga cgtgtcgtag aggaagcggc
     3361 gcccctcgcg cacttctgtc ggctccgggt tgaagccgac ggcgacgcgc gtcagctcgc
     3421 tgcgcgcggc cgtgtcaacg acgctcacgg tctgctcgaa gcggttgagc acgtagaggc
     3481 gcgagcgctg ctcgtcgagc gccaggcccg tcggcccctg gcccacgggg acgcgcgact
     3541 gcacggagcc agacgggtcg agcacgccga ctttcgcgga gccgagcgcg gcgacgtaga
     3601 tggtgccgtc ggaggcgcga gcgatgtcgg aggggagccc gaggctctgc gcgcgctccg
     3661 catccgaccc tgccgggtcg tcgtagttga tgtgagggtt gaggtcgaag gccgctgagg
     3721 cgccgtccga cgggttgacg ctcgaaaccc tcgtccttat gaagcggccg cgcaggttcg
     3781 gctcgaagcg cgtgaagttc tgcgagtcgg tgttcacgac gagcaggcgc gcgccggccg
     3841 ggtcgtaggc cgcgttgcct atgagcgtgc ccacgccgcg caattcggcc gtcactgcgg
     3901 cggtcgcggc gtctatgacg gccacgtcaa cgtcggcgag gctgaaccgg atcgcgggag
     3961 tccagcgcgc gtcgccgcgc tcgtccaccc acccagtgcc gttccacttg acgacgaggc
     4021 ccgtgcgcgg cgcgggcggc aggccggccg ccatcgcggg ctgcggggaa ggaagcccgc
     4081 cgtttcgagt gacgacgggc tcggggacga cggccgtctg gttgcccgac tcgaagacgg
     4141 agacgaagac gcgcgagccg gcggcgtcgc gggcgagcga gcgcggctgc ttgccgcgca
     4201 cctgcacgac ctgcggcgcc gacgaggtgg gcgccgccgc gtcgaagacc ttgacctgca
     4261 tcagccccga cacgcagacg aaagccttgc cgttacccgc cccggcgaag aggacgtccg
     4321 tcggctcgtc gcccacgtcg aagctctgcg tgacgttgcc cgtgaccagg tcaacgacgc
     4381 tcacggagtc ggagagccag ttgacgaccc aagcctcgcg gtcgctgcgc gcggcgacgc
     4441 tcacgggctc gagcccgacg ggtatctcgg ccgtgagcac gggagcgccg cccgtcagtt
     4501 ggaacaccga gagccggttc tcgggcgagt tgacggcgag cagtcgcttg ccgtccggcg
     4561 tcaccgcgag cgggtgaacc tgcgggctct cgaagttgcg gaagcccgtg aagggcccct
     4621 gcgccgaggc gggcggcggc cccgcccggc ccgccatcag ggcgagcgcg aaggccgcga
     4681 gagcgaacag gacgaagaga cttttgaata gggctccgtg agagggacga ggggacttca
     4741 tggcggcgac tcttttgtgc tcggggcgac gcggccgcac cggggcggcc tgcttgcggc
     4801 gccaacgggg aaggcgccgc gctcgggtgc ggaaagtgcg ggaaggttat acgcgcccgg
     4861 cgacggaagt caacgttttt cgcgtgcagc ggcagcgcgg gaagccctag tcgctcgcgg
     4921 cctgaagtcg ggcgcgggcg ccggaggcgg ggagcgttat gcggaaggtc gtgccccggc
     4981 ccggcgcgct ctcgacggcg atgtggcccg agtgctcctg cacgatgccg tagctgaccg
     5041 ccaggccgag gccagtcccc ttgccgacgc ccttcgtggt gaagaacggg tcgtagatgc
     5101 gcgcgacgtt ctcgggcgcg atgccgatgc cgttgtcggc aatcacaacg cgcacggcgt
     5161 cggggccgtc caacgtggtg ctcaaggcga tgcgcccgcc gtcgggtatg gcgtcgcggg
     5221 cgttgagcag gaggttggtg aagacctgct ggagcttgcc ggcgttgccg aagacgcggg
     5281 ggaggtcgcc cgagtagtcg cgctctatct ctatgcggcc gtggcggagc tgaggctcga
     5341 ggagttgcag cgtgtcgtcg agcacgcggt tcacgtcaac gtcggcgaag tccatgacgt
     5401 tgcccgtgcg cgagaagtta agcaggttgt tgactatccc ggtggcgcgg tcggcctgcc
     5461 ggcttatctt ctgaagcagg gcgtgcttcg ggtctgtgtc ggcgagcatc cccagaagca
     5521 tctgcgtgta ggaggagacc ccggtgagcg gcgtgtttat ctcgtgcgcc acgcccgcgg
     5581 cgagcaggcc gatggaggag agcttctcgc gctgctgaag ctgctcttcg agccggacgc
     5641 gcgaggtcac gtcctcgagc acgacgagcg caccgatgtg ctcggtcgaa tccgaccgct
     5701 tcaggggcgc gagcgcgacg ttaagtatca gggggcggcc ccggcgtgtc gccgtgtgca
     5761 gcttgtagat gtgccggagt tcggaaagct cccagcccga ctcgcccaag acctgccgaa
     5821 gcgtctcgga gaagtcctct gcgaaaagct cctcgacgcg gctgcccgtc gcctcgtccc
     5881 gccgcaggcc gagcatctct tcgagcgtgg agttgcaggc cgtcacgcgc cccgaggcgt
     5941 caacggcgag gatgccgacg ttgatggact cgacgatgga ctcgttgaac tccttcagaa
     6001 gagtcagctc ctcggcgcgc tccttctgct cctggtatag cagcgagttc tcaatggcta
     6061 cggcgacgta gcccgagacg gtgcgcagaa tctccaggtc ttcggacgag agcagcgccc
     6121 cgcccgtcga gcggcccagc ccgatgaccg ccaccatccg gccgcgcacg acgcatggca
     6181 cgtagtagtg gagcgagcgg cgaacgaagc cgttcgagtc ggccgggagg tctagcccgt
     6241 cggcgcgcac gatgccgtcc tcggccgagc gcgcgcgtat catctcgcgg aagtcgggcg
     6301 gcactatcaa atcattagag agcccggcgg cgcgcgccac gcggtagccg gccggggcgc
     6361 gggagtcctc gatgaagatg gcgacgcgct cgacgccgag gacttgctgt aggcggccga
     6421 cgagcgagtc gagcaggggc tccagagatg tcgtggccga gagcgtccgg ccgaagtcga
     6481 ggaggccggc gcgcaggtcg taactctcgc cgtagaagaa gcggtcaatg cgctcctgta
     6541 ggaagttctt cagcggcgcc gccgtcatca ctatcacggc catcgcggcg acggccacga
     6601 tgacgcgcat cgagattacg ccgggcgtga tgacctcgcc gccgaacgcg tagaggccgg
     6661 cgacgtaaac caccgagcct atcatcagcg ccagcgccag cgtcgtcagc gcatagacgg
     6721 ccgtgcggcg cacgaccatg tccacgtcca tcaggcggta gcgcaccacc gagttcccga
     6781 acgtgagcgg gatgagcacg agcggcagca ccgcgccgtc ctctatccag cggcgcgtcg
     6841 tctcggttag gtacgtgctc gcgtaacccg cgccgaacag gtagccggcc gcgtatagca
     6901 gcgtgaaggg cgtcaccgcc agcaccgagc cccacacgac ccacttgagc tgctggcgga
     6961 caatcgccga ctcgctcttc aggaagcgcc tgaccagcat gaacgagccc gcgacgagcg
     7021 ccgcggagaa gcacgcgacc tccgccaccc agacgcgcgc gctgaagtcg tcgggcagaa
     7081 ggcccgagac gaagtgaagg cgcggcgaga cgacgggcag gagcgagacg gcctgcgccg
     7141 cgactatcgc cgcggccggc gcgtagagca gcagcaccag ccacggcctg cgctcggaga
     7201 agcgcagccg ggccgggtag atggcgcaga agtgcaggaa gaccggcgcg aagagcgcca
     7261 gcgccgcccc gtccatgaag ctgacggaga ggtcgaagtc ctcgtagccg ccgtagggct
     7321 tgtagaagtg gaagacgaag gcgacgaggc agagagccgt gaagtggagc acgtagggcg
     7381 cgcgctcgcc ctgcttgaag aagacgaaga ggccgacgag cagatagacg acgccgatga
     7441 ggttgatgta gagagagccg cgcgtccacg ccgggggagg ggcgagcccg tcaatctcgc
     7501 actcgtaaac ggcggcgcgg cccgacgcgt caagccgctc gatgacgtaa acgatgcggc
     7561 cgccgcggcc cgcctcttcg aggtagattt gaacgtcgga gacggaagtg acctcgtcgc
     7621 cgcgcccctc gccgagcctt atcccgagga ggcggtcgcc cggctgcacg ccgaatatgc
     7681 ctttgcgcgc gttggccgtc cccggagcgg tctgcccggc gattatcccg cgcgaggtct
     7741 gctcccagta gatgccgtcg gtgggcgggg ccgtgtgggt gaggcgctgg gcgaagttga
     7801 gcgtgccggc ggcgacgagc accgccgcca caatgagcag cgcccaacct ttcgtcgtca
     7861 gcacggggcg tttcatcgaa atctcacacg gcctgtttta cgggacggcg ggcgccgtct
     7921 tttgttgagg cccgctcgcg cgcccggcct cccggccggg aggcccgtct aaatcaaaag
     7981 ttaagaagca atcactattc cagctttcgc cgcggccgcg ggccgcgttt tcggccggcc
     8041 ggcggggccg cggctcattc aaaaatccgt aaatgcctcc gaaaattcgg ataaagactt
     8101 aacacacaaa agccccgcgc tttgccgtgc agggcttcga gggggcgcgg gggctggctt
     8161 gttaaaaacg ccgcggcgag acgcatcaag gccgcggcgg ccgaaagtca gaaccttaac
     8221 gagatgcccc cgcgcaccgt cctgcgcaag gccccgagag acatgaagtt ttcgccgtcc
     8281 tcgacgcccg tgagcgtgtc gaggacgttc cgagcgtcga gcgtggcctg cgcgcggacc
     8341 ggcaggccga agttcggaag ctcctgcgtg accaagatgc tcagagacgg gtcatagacg
     8401 gccaggcggc ccgcgaacgg gtcaacggcg aagacggcgg cacgcggcga gaagcgcaag
     8461 accgtgcgga cggtcatgcc gtcggcgacg ctggcgtcta actgcgcggc ggccgtctgg
     8521 aagaaggcgt cctggaagag ctgctcaggg ctcgtgaagc cctcgggcga gagctgctgg
     8581 ccgcgcccga aggcgtagcc ggccgaggcc ttgagccgct ggcttatgcg ccgcgtatag
     8641 acgacgcgga ggccgcgcgc gccgccctgc tggttcgcga tgctgaggag cgctgcgctg
     8701 ccggcgtccg tgagccccgc gagcggcgag ctgaagagcg cgacgccgcg gtcgtcaacc
     8761 gtgtcgaaga aggccgtggc ctcgaccgag gagttctcgc ctatcacgcg ctcgacgccg
     8821 aactcgagac ggctcgtgcg ctccatgacg gcgcggccgt caacgagcgc gaccgcctgc
     8881 cccggcgtct ccttgaagac gacggtgtcg tcctcgaacg tctcggcgtc tgcgcgcgtc
     8941 gcggggctgt tgcccggcgc gtaggccgcg tgcaggcgcg tgcgcgcgtt cacgtcgaag
     9001 ccgacgccca gccggggcgt cagcgagtcg tcgccgcccg cgccgaagaa gcgcgagtag
     9061 tcgagcccga gcacgagcac tatgccgtcg cgcacgaccc actcgtcaac ggcgcgcacg
     9121 gagaattggc ccagcttgtc gtcgcccgcg agccccaacg cgaggcccgc ggtgccggtg
     9181 ctgtcaacgg ccgcgctgtt catgacgggg agccgcgcgc cgccgaacgt ggcgctaacg
     9241 cggtggcggg cgcccgcgcg caggcgggcc gtggcctcga gccgctcgaa ctcaccggtc
     9301 tgcccggcga agatcatgtc gaggtcgcgc gtgacgggcg tcttgaaggc gaagttcagc
     9361 ccagcgtagc cgccgagttc ggggttggct gagtcggcca cgaacgtctc gacgtagccc
     9421 tcgacgcggg ccttgccggc gacgttctcg tcctcggccg ccgccgcgac gccctcggcg
     9481 ccttcggtct cttcggccgc cacttcatcg gcgacgcccg tctcggcctc gcccgcgtgg
     9541 aagacggagc ggcgaatctg ctgcgagcga atcttgaact tggggtcgtc gcggtcggcg
     9601 cggcgctcgg gctcggtgcg gccctcgccg gcgggttgca ggttgaactg atagacgagc
     9661 tcggtggagg gcgagacctg cacggccgtg aaggtggcgg gggtgaaccc ttgcgcgagc
     9721 gcgcgcacga ggtagcggcc cggcgtgacg cgcgtggtga agcggccgtc ggccgagctc
     9781 ttcgtctcgc gcacgacttc gttcaggccg tcgcggagga ttttgacgag cgcccccgcg
     9841 accggcttgc cgcggccgtc gaggattgtg ccgctgatag tgccgaggcc agaagcgcgc
     9901 ctgtcgggcg ctccggccgc ggccagggcg ccgggcgcca gccccgcctg cgatagcgcg
     9961 agcgccgcaa agagcaccaa cgacgtgcgc cagtagaatt ttctcatcgc agcaaaacct
    10021 ccgggcgcgc ccccttgcgc ccgctccagg caccaaacta cgactcgctt aacctttgtc
    10081 tcgttcaggg cttacgccgg ggcgaggggc gagaccgact tcagcgctca cggcgcggcc
    10141 tctacggtta cggcgcggcc agctcccttc ggcggagagc gtattttccg ccaagcccgc
    10201 gagcagtgtc aagcatggtt tgcccctaac ttaccgtctg atgcgggttt tcgggggggt
    10261 ggtttgcccg gcgcttttcg gccgtgctac gatgcccggt caaactcccg aggcgcccga
    10321 accgcgggcg cgcacgtccg agagggtttt tatcttttga gcactcccga agtaactctt
    10381 gagcaggtta gaacgactag actgccgggc gggctgaccg tcctgaccga gcgcatgccg
    10441 gccctgcgct cctgcaccgt gggcgtctgg gcgcgccgcg gctcgcgcca cgaggcggcc
    10501 gagtggaacg gcgtctgcca cttcatcgag cacgccgtct tcaaaggcac cgagacgcgc
    10561 acggccctag acatcgccgt cgagtccgac cggctgggcg gccacttcga cgcctacacg
    10621 acgcacgagc tgacgggctt cgccatgaag gtcattgact cggcgctccc cgcggccttc
    10681 gacctcctct ccgacatgct cgcgcgcccg cgcttcgatg aggaggagct gaggcgcgag
    10741 cagaaggtga tcatcgagga gatgaagatg gtggaggaca ctcccgacga gttcctcgcc
    10801 gaaatcttca gcgccgcgta cttccccggc cactccctcg gccgccccat cgaaggcacg
    10861 cccgagaccg tctccacctt cggctccggg cgcacgcgcg agtaccacgc gcgcgcctac
    10921 gccccgcgga acctggtcgt cgcagccgcc ggcaacgtcg agcacggccg cctggtcgag
    10981 ctcgcggcgc gcgccttcga ggggcgcggg ctcgccgcgg gcgacgacgt cggggacggc
    11041 ggcccgccgc ccgcggccgc gccgatactc atacagagaa agaaggagct ggaacaggcg
    11101 cacctcatcc tggcagcgcc gttcccctcg ggccgcagcg ccgaccgtta cgcggcgggg
    11161 ctgttaagct cgataatcgg cggcgggact tccagccggc tctggcagcg cgtgcgcgag
    11221 gagcgcggcc tcgcatactc ggtcggggcc gcggcgagcc acttcaccga cgcgggcgtc
    11281 ttccagattt acgcgggtac ctcgcccgaa cagttggacg aagtcctaga cctcgcgctc
    11341 gcggagcttc gccgcgccgt gcgcgagccc gtgggcgaag acgagctgcg gctcgtgaag
    11401 gatcaggccg tcgcctcgat actgctcggg ttggaatcca cgagcgcgcg cgccgggtcg
    11461 ttagcgcgcc aggagatttt ccacgggcgc cgcatcccgc ccgacgaggt catcgcgcgc
    11521 atcgaggccg tcacgcccga cgacctgcaa aggctcgcgc gcgagttctt caagaccgag
    11581 tcgctcgcac tcggcgccct cggcgacctg aacggcttca aggtcgagcg cgcgcggctc
    11641 gaagtctgaa cgggaggcgg aggatgaagg ccctgctgac gaccatcgcg ctgtgcgccc
    11701 tcgccgcggc ccagagcggc gcggcggcgg gcggcgttga ggtcgtcggc ttcgactgga
    11761 agtacgacgg ctacctgccg gtcgagaccg tgaggaacag caagtctgcc acctcgacgc
    11821 gcgtcaggcg cggcaccgac tacgtcttca agtacagggc gcaggcgacc gttaaaaacg
    11881 cgggcgcgaa ggcggtcaag gccgtcgagt gggacttcgt cttctccgag gccgagggcg
    11941 gcagggagct gaagcggtac aaactgcgct cgaagcagca ggtgaggccg ggcgcgacgg
    12001 ccctcttgag cgaggacgtt ttcatcaagc cggaggagag cacccgccac ataagcgacg
    12061 ggcgccgctc ggtctccgtc acgcgcgtag aattctcgga cggctccgag tggcgcgcag
    12121 agggtaagcg ctgatgaggc tgacggtgct cgggagcggc tcgacgggca acgcgctgct
    12181 catctgcgcg ggcgggacgc gcgtgctcgt tgacgcgggc ctgagcgcta gggagacggc
    12241 gcggcgcctc gcgctcgtgg gcgaggacgt cgcgcgcctc gacggcgtga tcgtcacgca
    12301 cgagcacgga gaccacgcgg gcggcctccg cgtccttttg aagagcctcg cgtgcccggt
    12361 cttcatctcc ggcgcgacgc gcgacgccta catacgcgag cgcgtccaca actcctccga
    12421 cgaggcccgc aagcgcgcag acgccctgcg cgaccgcacg gaggaaatct cttcgagcca
    12481 ggacttccgc atcggcgaga ttgacttcca ccccttcacg gtcccgcacg acgccgcaga
    12541 caacttcggc ttcacggcca cgcaccgcgg cgtgaaggtg gcgacgctga tggacttcgg
    12601 ctgcgtgacg acgctggtcg ccgagcagct caagggctgc tcggcaatcg tcatcgagtc
    12661 gaaccacagc cgcgacatgc tcaaggcatg ccccgtctat ccgtgggagc tcaagcagcg
    12721 gatactgtcg cgcaccggcc acctctcgaa cgaggacgtg gccgactggc tgcgcgagag
    12781 cttcgacggc tcggccgccc acatcgtgct cgcgcacctc tctcagcgcg ccaacaaccc
    12841 gcacgtcgcc aagctctcgg ccgagatggc gctctcggag cgcggcggcc tcttcaagtc
    12901 ggccgcacag gtcacgctct cgcacccgaa agagccgacg ccgtggatag agctgtgaag
    12961 gcagaaggcg gaaggcaaag gacggaaggc gaaaggcggg aggcgggagg caggttcaat
    13021 cgcccgcgcg ctgccttctg ccttctgctt tccgccttcc tgctttcggg ctgcgccgaa
    13081 gagcggcgcc cgataccggg cggggcgcag gagacgattg accgcgtgac ggaggacatc
    13141 gccgccggcc ggcacgacaa agtttacgag gaggcggcgc ccgagtggcg cggggccgtc
    13201 ggggcggagg agcacggcag gattctggag cgcgtgcgcg agcggctcgg cgccgtgcgc
    13261 ggccgcacgc tccacacggg gcgcgagcag cagagcgcga gcgcgcctct ctcgggccac
    13321 acgctggagc ttacgtacca gaccagcttc gagcgcggcg acgccaccga gcgcttcacc
    13381 ctcgtcgagc gcgaaggccg ctggctgctc gccggctact tcgtcagcgc cgaggcgctc
    13441 aaatgagttc ctgactttat gatcgaacgc tacacgctgc ccgagatggg cgcgctctgg
    13501 tcggagcgga acaagttcga gaagtggttg gaggtggagc tggccgtctg cgaggcccac
    13561 gccgagatgg ggacgatacc gcgcgaggcc gtcgaagaga ttaaaggccg cgccgccttc
    13621 accgtcgagc gcatccgcga gatagagaag acgaccgacc acgacgtcat cgccttcacc
    13681 accgccctgg ccgaatccat cggcgagccc gcgcgcttcg tgcactacgg cctgacctcc
    13741 tcggacgtgg tggacacggc caacgccctc ctgctccgcg acgcctgcgg cctcctgctc
    13801 gacaaactcg acgctctggc ctccgttctg cgccgccgcg ccttcgagtt ccgcaggacg
    13861 ccccagatcg gccgcacgca cggcgtccac gccgagccga catccttcgg cctgaccttc
    13921 gccctctggt tcgacgagac gcgccgcaac cgcgcgcgtc tcgaacgcgc gcgcgaggtc
    13981 gtgtccacgg ggaagataag cggcgccgtc ggcgcgttcg cgcacttgga cccggaagtg
    14041 gaagagaggg tctgcgcgcg gctgggattg aaggcggcgc ccgtctccac gcaggtcata
    14101 cagcgcgacg tttacgccga gtaccttacg acgctcgcca tcgtcgcgtc gtcgcttgaa
    14161 aaattcgcgc tgcaagtccg ccactggcag aggacggagg tgcgcgaggc agaggagcgc
    14221 ttccgcgcgg gccagaaggg ctcctcggcg atgccgcaca agcgcaaccc gattctgtcg
    14281 gagcgcatct gcggcatggc gcgcgtcgtg cgcggctacg cggtcgtcgg gctagaagac
    14341 gtcgcgctct ggcacgagcg agacatctcc cactcctcgg ccgagcgcgt cgtgctgccc
    14401 gacgcctcca tcgcgctcga ctacatgctc gctaagacgg cctcgctcct cgacaatctc
    14461 gtcgtctatc ccgagaggat gcttgagaat ttgaacctga cgcgggggct cgtcttcagc
    14521 gggcagttgc ttctggcgct cacgcgggcg ggcgtctctc gcgaggaggc ttacgcctgg
    14581 gttcagcgca acgccatgcg ggcgtgggac gagggcggcg acttccgcgc gctcgtgctc
    14641 gatgacgcgg acatcacggc ccggctcggg cgcgacgccg ccgcgcgggt cttctcgctc
    14701 gaaacctacc tgcggaacgt tgacgccgtg ttccggcggg tgttcggaga aagcgaaggg
    14761 tgacgagtcg cagtcaactc atcacccttc gctttgccac cgcttcggcc gttacttcgt
    14821 gaacttctcg gcgaggctgc cgacgatggg cagcttgaac gtctggccct ggtaggactt
    14881 gacggcggcg tagatgaggc agccgaggtg cgccagcacc agcagcagga agagcagcgt
    14941 ccagagcagc cccgagattg ccgcgagcgt ctcggaggcg aaggccagcg cgatgcttat
    15001 gatcgtgagc acgatgctca gcacgacgaa ggtgacggtg gcgagggcgg cgtagagcac
    15061 ggactgtatg gcgtggaacc ggacgaagcg gttgtccttc tctatgaaga tgaggacgag
    15121 cgcgagcagc cccacgatgt agccgatggc ggcggcgacg ttgccgtcga gccctatgct
    15181 cgacttgccg acggcgctgc cgggggggcc gccgtagttg gggttttgca tcttgtttaa
    15241 gacttctcct ttgcttgaaa attctgccgg cgcggggcgg cgcgcctctc tttgcgcgcg
    15301 gccctccggc ctgctaaaag ttgtgcgcgt gcatgcgtct ttcgggcgcg ggcatcttat
    15361 gcgaacgccc gcgctaaagc aacaaacttc ttccctgcgc gcgcggggcc gaggagggga
    15421 catttgaggg ctaaagttta cgtcacacta aagcgcggcg tgctcgaccc gcagggcaag
    15481 gccatccacc actccgtcga gctgatgggc tacgagggcg tgcgcgacgt gcggcagggc
    15541 aagttcttcg agatagcgct cgacgaccgg ctcggcgacg aggccgcccg cgacgcggcc
    15601 gagcgcatgg cgaaggacgt tctatccaac cccgtcatcg aagacttccg cgtggagata
    15661 gagagatgaa attcggcgtg atcgtcttcc ccggctcaaa ctgcgaccac gacgcctacc
    15721 acgtcgtctc caagcacgtc ggccagcccg ttgacttcgt ctggcaccgc gagacggacc
    15781 tctccggcta cgacgccgtc ataatccccg gcggcttctc ctacggcgac tacctgcgcg
    15841 cgggtgcgct cgcccgattc tcacccgtca tggcgtcggt caaggagttc gccgcgcgcg
    15901 gcggcttagt cctcggcatc tgcaacggct tccagattct ctgcgagtcg ggccttctgc
    15961 ccggcgcttt gatacgcaac aaagagctcc acttcatctg ccagcacgtc cacgtccgcg
    16021 tcgagacgac cgagacgccc ttcacccaca ggcttaaggc cggcgaggtg ctccacctcc
    16081 ccatcgcgca cgccgagggc aactacgtct gcgacgacga gacctactgc gaactcgtga
    16141 gggaagaccg catcgtcttc cgctactcgg acgccgccgg cgagctcaag ggcgaggcga
    16201 acctcaacgg ctcgcgcgac cacatcgcgg gcatctgctc gcgcgggcgg aacgtgctgg
    16261 ggctcatgcc gcacccggag cgcgcgtgcg aagagctgct cggctcctcg gacggtctcg
    16321 gcctcttcgg ctctctcgcc gccacgctcg ccgcgcaggc ctgacgcgcg aaatacctgt
    16381 tgacttcccg cccggccggg acatatcttg ccgccgtctc gaagagccgt cctcgcgggc
    16441 gacgcacgcc cgcgcgcctc taccgacctg cctttcacgt ccgaacaaag ggggcgccgt
    16501 tctcacgaag gggcctcgct tccctcagaa gcaaacagct ttcccgctcg tctcgaaagg
    16561 aggaaacgtc tatggagtac cttttctggg cgctcgccgg ctggtgcggc acgccgtggc
    16621 ggaggcgttg gccctggcct tggccccccg gccccgaccc ggacccgcgc gggccgcatc
    16681 ccgagccgtg ggggccgagc cctgacccgt ggataatcat taaagtcctg ggaatcgtgg
    16741 gcggcatcgt cggcgggata attttcgacc gcgtcttcga cggcacgccg ctgcccgcgc
    16801 gctccgtcgg ctggatggcg gcgaccagct tcggcgcgct catcgtcggg cgcgtcgtct
    16861 cggaggtcgg cagcctagtc atcccgtccg gcgcccgcgc caacacccgc ggctgaaggt
    16921 cgcgccccgc gcgtctgcgg gaagagaggg ccgtgcctgc aggcgcggcc ctctcttatt
    16981 cgtgtccggc cgtcgcgtgt aaagtttgtg taaaacctgc ggcgcgcaac ttggaactcg
    17041 gggcgcgctc ggttaagctc tcggcgaaga ttaccgaaag gagttccctg aaagtttatg
    17101 aagaggctat acgccgccgc gctgctcgcc gccctttcgc tcacggccct tcccttagcc
    17161 gccgccccgc acgccgccgc cgacgagact gccgcggcca agctcgccat cggctcgacg
    17221 atcgaagact tcaagctgcc ggacgcggac ggcaaggagc actcgctctc gtcgctcaag
    17281 ggcgcgaagg ggactgtgat catcttcgtc tcgacggact gtccggtctc gaacgcctac
    17341 aacgagcgca tggagaagct cgccacggac tacaagtcgc gcggcataag cgtcatcggc
    17401 atcaactcga acgcgaccga gacggcctcg caggtcaaag agcacgccgc cgcgaggggg
    17461 ctcacgttcc cgatactcaa ggacgccggc aaccgcgtag ccgaccgcct gcaggcgcgc
    17521 gccacgcccg aagcttacgt gctcgacgcc tctaacaagc tcgcctaccg cggccgcata
    17581 gacaactcgc gcgacggcaa gtccataact tcgagcgagc tgcgcgacgc gctcgaagcc
    17641 atactcgccg gccgccccgt cgagaagacc gaggtgtcgg ccttcggctg ctccatcaag
    17701 cgcgtctagg ggcggccgca cggcatgatg aagtcaccgc tcctgtcgtc aacgtcgctg
    17761 ctgctgctcg gcgccgccct cgtcttaggt gggggcggcg cctcggcgca gaaggccggc
    17821 gcgccggggc agggcgcgaa gcccgctccc gcctcgcccg ccccgaaggc gaaggtcgag
    17881 gagattaagg aggccggcct caagtcgctg ctcgagcgcg gcccggccgc ggggcgcccg
    17941 ctgctcgtga acttctgggc gacgtggtgc gtgccgtgcc gcgaggagtt ccccgacctc
    18001 gttaaaatca gggagcacta cccgacagag gcgctcgact tcgtgctcgt ctccttggac
    18061 gacgcctccg acatcgcaac gaccgtcccc gagttcatcg agagcatgcg cgcctcgcac
    18121 atgccctcat acctcctgaa cgccgacgac cccaacgccg ccatcaacct cgttgacccc
    18181 ggctggcgcg gcgagttgcc cgcgaccttc ctcttcgacc gccagggcaa actgacattc
    18241 aagcacatgg gccgcgtaaa gccgcccgag cttcgggccg caatcgagca ggccatcgcc
    18301 gcgaagccgc aggagccggc cgcacagccg taggcgtcac ccgcctcgaa cctcgtcaaa
    18361 atagatcgaa gaaccagccg tagagcgccc ggcccgcggc gggccagagg ctgaagagca
    18421 cgtaggagag gagcgcgagg cccgcgttcg tgagcctgta gatgtggccc atgtagagcg
    18481 cgccgaccga gaccagcgcg gcgtagcagg agaggagccc cacgaagtag agcgccgccg
    18541 cggcccagac ggtagcgccc gccgtgtggc cccggacggt gagcgctgcg aaggcagacc
    18601 agccgacttg caggaagccg ctcaccgcga ggcccgaaat cacgtaggcg tccgggtgag
    18661 agtacaagtc catgcggaag tagcgctgtg ccagcaggag cgccgcggcc gtcaggtaca
    18721 gtacgaccag gaagagccag tagcccttgg cgaagctcca gaccgcccac gccctgcccg
    18781 cgggcaagag cagcagcgtg ctcagcaaca cgaacgcgag gaacaccatc cccgcgaaga
    18841 aggcttcaaa gacctccttc tgatcctcgt gcagaatcca cctgccgaac tctcccatag
    18901 gtctcaaaac ccccggccgc gctgccccgg cccgcgtatt ctactgcgcc gcgcgcgcga
    18961 agataaggcg gagggagttt caccccgccg ccgcgtttga agaaaacggc gcgcgccttt
    19021 atcctgtcct gtcctttcat ccgttacgag ggcaatcatc gctcccaaaa tgaagtctga
    19081 agtaatcacg ccggaagtcg tggccgcgca caacctgacg ccggaggagt acgcgcgcat
    19141 ccgagagctt ttggggcgcg agccgacgtt cgtcgagctg ggcgtcttct ccgtgatgtg
    19201 gtcggagcac tgctcttaca agtcttcgcg cgcgcacctg cggaggctcc cgaccgaggg
    19261 gccgcgcgtc atagtgcctc cgggcgagaa cgctggcgtg gttgacgtgg gcgacggctg
    19321 gtgcgccgcc ttcaaggtcg agtcgcacaa ccacccgtcc ttcatcgagc cgttccaggg
    19381 cgcggccacc ggcgtcggcg gcatcctccg cgacatcttc acgatgggag cgcgccccgt
    19441 cgcctcgatg aactctctgc gcttcggcac gctctcgcac cccgcgcacg gccggcgcaa
    19501 ccgcgcgctg ctcgcgggcg tcgtcgcggg catcgcgcac tacggcaacg ccttcggcgt
    19561 ggctaccgtc ggcggcgagg tcgtcttcga cgacgcctac tccttaaacc ccctcgtcaa
    19621 cgccttcgcg ctcggcctcg tgcgccacga ccagatcttc ttcggcaagg ccgcaggagt
    19681 aggcaacccc gtgctctacg tcggcgccaa gaccggaaga gacggcatac acggcgcgac
    19741 gatggcctcg gccgagttcg acgaagaggc gctcgagaag cgcccgaccg tgcaggtcgg
    19801 cgaccccttc ctcgaaaagc ttctgctcga agcctgcctc gaagccatgc gcagcggcgc
    19861 cgtcgcaggc atacaggaca tgggcgcggc gggactgacc tcttcgtcgt gcgagatggc
    19921 ggcgcgcgcc ggcaacggca tcgagctaga cctctcgctc gtgccgcagc gcgaggaggg
    19981 gatgacccct tacgagataa tgctttcgga gtcgcaggag cgcatgctca tcgtcgctca
    20041 cggcgggcgc gagcggcagg tcgttgacat cttccgcaag tgggacttgg acgccgtcgt
    20101 catcggccgc gtgacgggta cgggcagcgt cgtcgtcata cacggcggcg agcgcgtggc
    20161 cgacataccc gcgcgctttt tgacggacga ggcgccgcgc tacgagcggc ccatgcgcgc
    20221 ccccgtgcgc gtcgccggga cagacagcca ggtgcctgcc gccggcggag aagtgccggc
    20281 caacgcttca gtcgtcaacg ccgacgagct cgacgaagtc ctagaagcgc cgagcacggt
    20341 ggtcgcgggc gcgggtcacg acgaagcgct gcgccgcctg ctcgcctcgc ccaacgtcgc
    20401 gtcgaaggag tgggtctatc gccagtacga ccacatggtt cggacgaaca cggcggtgct
    20461 tccgggcgcg gacgccgccg tcgttcgcat aaaggagacg cgccgcgcgc tcgccatgtg
    20521 cctggacggg aacggccgct actgcgccgt gagcccgcgc gagggggcgc ggctcgtcgt
    20581 ggcggaggcc gcgcgcaacg tcgtctgcgt cggcgcccgc ccgctcgcga taacgaactg
    20641 cctgaacttc gcgtcgcccg agcggcccga agtgatgtgg tctttctccg aggtcgttga
    20701 cggcatggcc gaggcgtgcc gcgcgcttgg cacgcccgtg gtctccggca acgtctcctt
    20761 ctacaacgag accgaggggc gcggcataca ccccacgccc gtcgtcggca tggtcgggct
    20821 ggtcgaggac gttcggcgcg tcgtcactca agggttcaag cgcgaggggc aactg
//
LOCUS       DASPKR010000019         2240 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1037697, whole genome shotgun sequence.
ACCESSION   DASPKR010000019 DASPKR010000000
VERSION     DASPKR010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2240)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1037697"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..748
                     /gene="pheA"
                     /locus_tag="VD968_00495"
     CDS             <1..748
                     /gene="pheA"
                     /locus_tag="VD968_00495"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: protein motif:HMM:NF008865.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HYE12904.1"
                     /translation="FAAVAEGAADLALAPVENSLAGTVHQTYDLLLESRLTITAEVIH
                     PISHNLIGCSGATIESVRAVESHPVALAQCERFFAANPHVRRVPSDDTAASVRRVVER
                     GDPTRAAIAGARAARLYGGITLRARLEDHRENYTRFLLLAPSPPQSDERADKLSLVVR
                     LRHRPGALYAALEPLARRGIDLLKIESRPVRGEPWQYRFYLDLRAAAGEPRVVEALAE
                     LRRHAEEVRVLGCYPSARAAASEPELTRLK"
     gene            771..1850
                     /gene="aroF"
                     /locus_tag="VD968_00500"
     CDS             771..1850
                     /gene="aroF"
                     /locus_tag="VD968_00500"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: protein motif:HMM:NF006421.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HYE12905.1"
                     /translation="MVITMSAHASADEVSHVVGRVNECGYKAHVIRGASRTVIGAVGS
                     NGRRNELEALRAAPGVESVVPIVQPYKLVSWELRPERTIVGVGGVPIGGRGAVVIAGP
                     CSVESREQLFETARAVRRAGASMLRGGAYKPRTSPYDFQGLGIDALRLLQEASRETGL
                     PVVTEVMSETDVELVAEHADMLQVGARNMQNFALLRRLARTPRPVLLKRGPSATIKEW
                     LLAAEYLLAGGNPDVVLCERGIKTFETETRNTLDLAAVALVREVSHLPVVVDPSHATG
                     RRDLVPAAARAALAVGADGLMVEVHPRPERALSDGPQSLDLEGFARMMESFDEPPRRV
                     ARPAAILTRDACPPHAAYDEACELV"
     gene            complement(1869..>2240)
                     /gene="leuD"
                     /locus_tag="VD968_00505"
     CDS             complement(1869..>2240)
                     /gene="leuD"
                     /locus_tag="VD968_00505"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: protein motif:HMM:TIGR00171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HYE12906.1"
                     /translation="SREHAPWALLDYGFRAVIAPSFADIFANNCVKNGIAPVELTDEQ
                     VAELARRARETEGYGVTVDLERCEVRDGEGFSARFEMDEFRRRCLLEGLDEMGLTLLR
                     EDDIAAFEARRPRWLEMDARR"
BASE COUNT          350 a          787 c          758 g          345 t
ORIGIN      
        1 cttcgcggcg gtcgcggagg gtgcggccga cttggcgctc gcacccgtgg aaaacagcct
       61 cgccgggacg gtgcatcaga cttacgacct tctgctcgaa agccgtctga cgatcacggc
      121 ggaagtcata caccccatca gtcacaacct gatcggctgc tccggcgcga ccattgagtc
      181 cgtccgggcg gtcgagtcgc acccggtagc tctcgcgcag tgcgagcggt tcttcgccgc
      241 caacccgcac gtccgccgcg tgccgagcga cgacaccgcc gcgagtgtgc gccgcgtcgt
      301 cgagcgtggc gacccgacgc gcgccgccat cgcgggcgct cgcgccgcga ggctctacgg
      361 cggcattacc ttgcgagcgc ggctcgaaga ccaccgcgag aactacacgc gcttccttct
      421 gctcgccccg tcgccgccgc agagcgacga gcgggccgac aagctctctc tcgtggtgcg
      481 actgcgacat cggcccggcg ctctctacgc cgcgctcgaa ccgctcgcgc gccgcggcat
      541 agacctgctc aagatcgaga gccgccccgt ccgaggcgag ccgtggcagt accgctttta
      601 cctcgacctc cgggccgcgg ccggcgagcc gcgcgtcgtc gaggcgctcg ccgagctacg
      661 ccggcacgct gaggaagtgc gcgtccttgg ctgctaccct tcggcgcggg cggcggcctc
      721 cgaacccgaa ctcacacgac tgaaataaag taaggagagg cttttcgttt atggtcatca
      781 caatgtcggc acacgcttcc gcggatgaag tcagccacgt tgtcgggcgc gtcaacgagt
      841 gcggctacaa ggcgcacgtc atacgcgggg cgtcacgcac ggtcatcggc gcggtgggaa
      901 gcaacggccg tcgcaacgag cttgaggcgc taagggccgc gcccggcgtc gagtcggtcg
      961 tccccatcgt acagccgtat aagctcgtca gctgggagct gaggccggag cgcacgattg
     1021 tgggcgtggg cggcgtgcca atcggcgggc gcggcgcggt ggtcatcgca ggcccctgct
     1081 cggtcgagtc gcgcgagcag ttattcgaga ctgctcgcgc ggtgaggcgt gccggcgctt
     1141 cgatgctgcg cggcggcgcg tacaagccgc gtacttcgcc ttacgacttt cagggtctcg
     1201 gcatagacgc cctgcgcctt ttgcaggaag cgagtcgtga gacggggctg ccggtcgtca
     1261 cggaggtgat gagtgagacg gatgtcgagt tggtcgccga gcacgcggac atgctgcaag
     1321 tcggcgcacg caacatgcag aactttgcgc tgctccggcg tctcgcgcga acgccgcgcc
     1381 cggtgcttct gaagcgcggc ccttcggcga cgatcaagga gtggctgctg gctgccgagt
     1441 acctgctcgc aggcggcaac cccgacgtcg tgctctgcga gcgcggcatc aagaccttcg
     1501 agacggagac gcgcaacacg ctcgaccttg cggccgtcgc gcttgtgcgc gaagtctcgc
     1561 acctgcccgt agtcgttgac ccgtcgcacg ccacaggccg ccgcgacctc gttccggcgg
     1621 ccgcgcgcgc ggccctcgcc gtcggcgccg acggcctgat ggtcgaagtc cacccacgcc
     1681 ccgagcgcgc cctctcggac ggcccgcagt cgctagacct cgaaggcttc gcacggatga
     1741 tggagagctt cgacgagccg ccacgaaggg tcgcgcgccc ggccgcgata cttacgcgag
     1801 acgcgtgccc gccgcacgca gcctacgacg aggcgtgcga actcgtctga gttgccgccg
     1861 acggagtgtc agcggcgcgc atccatctca agccagcgcg ggcggcgggc ctcgaaggcg
     1921 gcgatgtcgt cttcacggag cagtgtcagc cccatctcgt cgaggccttc gagcaggcag
     1981 cggcgacgga actcgtccat ctcgaagcgc gcggagaagc cctcgccgtc tcgaacctca
     2041 cagcgttcga ggtcaaccgt cacgccgtag ccctccgttt cgcgcgcacg ccgcgcaagc
     2101 tccgccacct gctcgtccgt caactcgacc ggcgcgatgc cgttcttcac gcagttgttc
     2161 gcgaagatgt cggcgaacga cggcgcgatg acggcgcgga agccgtagtc gaggagcgcc
     2221 cacggcgcgt gctcgcgcga
//
LOCUS       DASPKR010000020         5382 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1167413, whole genome shotgun sequence.
ACCESSION   DASPKR010000020 DASPKR010000000
VERSION     DASPKR010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5382)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5382
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1167413"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(27..296)
                     /locus_tag="VD968_00510"
     CDS             complement(27..296)
                     /locus_tag="VD968_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12907.1"
                     /translation="MSTTTTTIAPATTAAPATSRRRRWPKVAAALLLALLAWAAFDLY
                     GPRSTSLRDFDADEVARLETAMTASPSVFTIEPPSRAISSRSTSK"
     gene            complement(293..2143)
                     /locus_tag="VD968_00515"
     CDS             complement(293..2143)
                     /locus_tag="VD968_00515"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5939 domain-containing protein"
                     /protein_id="HYE12908.1"
                     /translation="MRRKKEFHYRWEYELAASPRALWPLIADTNRFNRDAGLPGLLGR
                     ERDGGATAETKNARRRLRFSKLGVRVEWEEEPFEWVRPFRFGVVRRYKSGPVAEARIS
                     VELAAREGGGTRLVYQVWAAPRGALGRAVIPIQVGLISARKFAEVFRRYDERASRDER
                     PRGAAASTSSPLPERTLLNSLRQKLVADGAPPNLVALLAEEVTEADELSLSRVRPYAL
                     ADAWGERRRDVLELCLRATRSGMLDLRWELLCPMCRGAAQSAASLSDVRAEQHCDTCR
                     IDFTANFDRSVEVVFRPNPAVRRVEAREFCVGGPQVTPHVAVQQLIPAGGRREVAPAL
                     EEGHYRLRAMSLPGALSLLVTRDGAPSATLRAEAGGWPDEEPRVGTAPALSLENATDD
                     EQLFIIERAAWGDQAATAAEVTALQLFRDLFATEALRPGDRINVGQMTVLFTDLRDST
                     RLYREIGDAVAFGAVMNHFDVLREEIAREGGSIVKTLGDAVMAVFPRPAPALLAITRA
                     QAALASPPAGVRPLVLKAGIHAGPCIAVTLNGRLDYFGSHVNIAARLEPLSTGSDCVI
                     TEDVRRDPAVAELLGEEAGGFRVEPLETNLKGFDGERFRLWRVTRSGGER"
     gene            2373..2753
                     /locus_tag="VD968_00520"
     CDS             2373..2753
                     /locus_tag="VD968_00520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12909.1"
                     /translation="MAARKSGKKSSKKGGGSKGGAKRGAGSSGGSKKGSAGGSKKSAS
                     KKGGGKKGGASRKGGSKKSGSKRGGSKVLSKAKKIAGDVLSSAAIGALIGAVKSSADE
                     LESAAGKEGQPGGRKGGKSGGGRK"
     gene            complement(2851..3246)
                     /locus_tag="VD968_00525"
     CDS             complement(2851..3246)
                     /locus_tag="VD968_00525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12910.1"
                     /translation="MRPRHYALTIALALAAGLAGRALGDGLWAARVAEAREPARAEEE
                     RRWEYAAVTKAQFVGSPRGGTYWIAYFRGSGAQVFTVEAGVTESAQAKALSRMGDEGW
                     EMVGEGPLEVRQSGPGGTPTAIFFKRRKE"
     gene            complement(3435..3875)
                     /locus_tag="VD968_00530"
     CDS             complement(3435..3875)
                     /locus_tag="VD968_00530"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE12911.1"
                     /translation="MPYMTESLTDSPAEAKDGGKTILVVDDVSDNIILISLSLQDMGY
                     RVVTATNGEDALSVAKLARPDLILMDIAMPQQDGLAATRHIREQAELQDVPVIALTAF
                     DTEGFRQAAYDAGFNGYLTKPIDFDRLKKLMKMLLSGGKTSSLA"
     gene            complement(4203..5153)
                     /locus_tag="VD968_00535"
     CDS             complement(4203..5153)
                     /locus_tag="VD968_00535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12912.1"
                     /translation="MELVILLTILFWAVIPCLITVWMFREHGWSRGLGLLLGILTGPL
                     GILLALVLILISDRGRRGRRGKAFRLYYHFPVVGSLHVSTVWMLAGVATFLCVWALGG
                     VWYEFRLAREEADAGGQSVGGTVAKSQGQQPITAGSPTATQRAEAKAPAAGQINPASS
                     PSAPMLSSLAPQGIQAAQIAGRTDNTAPQGGQAVPPVASSNSSAGATATVAGVSLSPA
                     SPEPTQAAAPQPHASPPVMSREAAVSEVTRGLGARGHKVHASVSGDAQTSTLSLSGAT
                     LTREAGNQVIGNRRVREALKGAGVRIVVMINGQESWTYML"
BASE COUNT          905 a         1776 c         1850 g          851 t
ORIGIN      
        1 gccgtcgcgt tcggcgccgt gatgaatcac ttcgacgtgc tgcgggagga gatagcgcgc
       61 gagggcggct cgattgtgaa gacgctcggc gacgccgtca tggccgtctc taagcgggcg
      121 acctcgtcgg cgtcgaagtc gcgcaggctc gtgctgcgcg ggccgtagag gtcgaaggcg
      181 gcccaggcga gcagcgcgag cagaagggcc gcggccactt tgggccagcg cctccgtcgg
      241 ctcgtggcgg gcgcggcagt cgtcgccggg gctatcgtcg ttgtcgtcgt gctcatcgtt
      301 cgcctccact cctcgtcacg cgccagagcc tgaagcgctc gccgtcgaag cccttgaggt
      361 tggtttcgag cggctcgacg cggaagccgc ccgcctcttc gcctaaaagc tctgcgaccg
      421 ccgggtcgcg ccgcacgtct tcggtgatga cgcagtcgct gcccgtcgag agcggctcaa
      481 gccgcgccgc gatgttgacg tgcgagccga agtagtcgag ccgcccgttg agcgtgacgg
      541 cgatgcaggg gcctgcgtgt atgccggcct tgagcactag agggcgcacg cccgcagggg
      601 gcgaggcgag cgccgcctgc gcgcgcgtga ttgcgaggag cgccggcgcg ggccggggga
      661 agacggccat gacggcgtcg ccgagcgtct tcacaatcga gccgccctcg cgcgctatct
      721 cctcccgcag cacgtcgaag tgattcatca cggcgccgaa cgcgacggcg tcgcctatct
      781 ctcggtagag gcgcgtcgag tcgcgcaggt ctgtgaagag gacggtcatc tgcccgacgt
      841 ttatccggtc gccgggcctg agcgcttcgg tcgcgaagag gtctcggaag agctgaagcg
      901 ccgtcacctc cgcggccgtc gccgcctggt cgccccacgc cgcccgctcg atgatgaaga
      961 gctgctcgtc gtcggtcgcg ttctctagcg agagcgcggg ggccgtgccg acgcgcggct
     1021 cttcgtcggg ccagccgccg gcctcggcgc ggagcgtggc cgagggcgcc ccgtcgcgcg
     1081 tgacgagaag gctgagcgcg cccggcaggc tcatcgcgcg caggcggtag tggccctctt
     1141 cgagagcggg cgcgacttcg cgccggccgc cggcagggat gagctgctgc acggcgacgt
     1201 gcggcgtcac ctgcggccct ccgacgcaga actcgcgcgc ctcgacccgt cgcacggccg
     1261 ggttagggcg gaagacgacc tcgacggagc ggtcgaagtt cgctgtgaag tctatacggc
     1321 aggtgtcgca gtgctgctcg gcgcgcacgt cgctgagcga ggcggccgac tgcgccgcgc
     1381 cgcggcacat ggggcagaga agctcccagc gcagatcgag catccccgag cgcgtggctc
     1441 ggaggcacag ctccaaaacg tcgcggcggc gctcgcccca ggcgtctgcg agcgcgtaag
     1501 ggcgcacgcg cgagagcgaa agctcgtccg cctccgtcac ctcttcggcg agcagcgcga
     1561 cgaggttggg aggagcgccg tccgcgacga gtttttgacg gagcgaattg aggagcgtgc
     1621 gctcgggcaa ggggcttgat gtcgaggcgg cggcgccgcg cgggcgctcg tcgcgcgagg
     1681 cgcgctcgtc gtagcgtcgg aagacttcgg cgaacttgcg ggccgagatg agcccgacct
     1741 ggatggggat gacggcgcgg ccgagcgcgc cacgcggcgc ggcccacacc tgatagacga
     1801 ggcgcgtgcc gccgccctcg cgcgcggcga gctcgaccga gatgcgcgcc tctgcgacgg
     1861 ggccgctctt gtacctccgc acgacgccga agcggaaggg gcgaacccac tcgaacggct
     1921 cctcctccca ctcgaccctg acgccgagct tcgagaagcg caggcgcctg cgggcattct
     1981 ttgtttcggc ggtggcgccg ccgtctcgct cgcgcccgag caggccgggg agtcccgcgt
     2041 cgcggttgaa gcggttcgtg tcggcgatga gcggccagag cgcccgcggg ctcgccgcaa
     2101 gctcatactc ccagcggtag tgaaactctt tcttgcgtcg cacggcggaa agtctcaggc
     2161 ccgcgccgcg ggcgcccaca ttcttcccgc gcgccgccga cgagtcaata acattctccg
     2221 agacgttcac ggccacgcct tcaactacgc ccgagcggct cgtagcggat tcgcaagccg
     2281 gcacgcgagc gataaaagtt aatgacagcg cggccttcat ctgctaggtt gtggccgcag
     2341 tcgcaaatcg cacatcgaag gagactcaag gaatggccgc aaggaaatcc gggaagaagt
     2401 cgtctaagaa gggcggcggc agcaaggggg gggcgaagcg cggggcgggc tcgtcgggcg
     2461 ggtcgaagaa ggggtcggcc ggcggctcaa agaagtctgc gtcgaagaag ggcgggggca
     2521 agaagggcgg agcgtcgcgg aagggcggct cgaagaagtc cggctcgaag cgcggcggct
     2581 cgaaggttct gagcaaggct aagaagattg cgggcgacgt gctgagcagc gcggcgatcg
     2641 gcgccctcat cggcgccgtc aagagcagcg ccgacgagct tgagagcgcg gccggtaaag
     2701 aaggccagcc cggcggtcgg aagggcggca agtccggcgg cggtcgaaaa taaaaggacg
     2761 ggcgttagtg agcaggcggc gggctcggcg ctcccgtccg gcatcctctt aagagccgac
     2821 gcgcggagcg ccccgagccc gcctctcacg tcactctttc ctgcgcttga agaagatggc
     2881 cgtcggcgtg ccgccggggc ctgactgcct gacttcgagc gggccttcgc cgaccatctc
     2941 ccagccctca tcgcccatcc tgctcagcgc cttcgcctgc gcgctctcgg tgacgcccgc
     3001 ctcgacggta aagacctgcg cgccggagcc gcggaagtac gcaatccaat atgtgccgcc
     3061 ccgcggcgag cctacgaact gggccttagt gacggcggcg tattcccacc tgcgctcttc
     3121 ctccgcgcgt gcgggctcgc gagcctcggc gaccctcgcc gcccaaagcc cgtcgccgag
     3181 tgctcggccc gcaagccccg cggcgagcgc gagggctatc gtcaaggcgt aatgtcttgg
     3241 tctcattcgt cggcctcact tcgttggaat ctcgcgggcg cgtcgcccaa aggccgggcc
     3301 gcgcgcggtc ggaggactat aacaccgccc gcgacactta taacccgcgc ccgcatacac
     3361 gcccgccgcg gccgtcagtt ccggccgttc ggcgagtgcg ggttgaaaac ggggacgggc
     3421 ggccggcgtg gccttcaggc gagcgatgaa gtcttgccgc cggagaggag catcttcata
     3481 agcttcttca ggcggtcgaa gtcaatgggc ttagtgaggt atccgttgaa gccggcgtcg
     3541 tatgcggcct ggcggaagcc ttccgtgtcg aaggccgtga gcgcgatgac gggcacgtcc
     3601 tgaagctccg cctgttcgcg tatgtgccgc gtcgccgcaa gcccgtcctg ctgcggcatg
     3661 gctatgtcca tgagtatgag gtcggggcgc gcgagcttgg cgacgctcaa cgcgtcctcc
     3721 ccgttcgtcg ccgtcacaac ccggtagccc atgtcctgta gcgacaggct tatcagaatg
     3781 atgttatcgc tcacgtcgtc aacaaccagg atggtcttgc cgccgtcttt cgcctccgcc
     3841 gggctgtcgg tcaaactctc cgtcatgtag ggcattatta ctcttatcct ccgtaagacc
     3901 aaaacaaaac gcgcacgtct gacaaaagtc ggggttcggc tgcgctctcc ccttcacagc
     3961 cgaaccccga ctttgtgctc cccgatgcta gaccgggaat cagtctctta cgcgagacgc
     4021 catgagagat aacaacccgc gtgccacggc cctcgccgcg gggcttgacc cggaaagcag
     4081 aactttcctg gccttttaat cagagacagt tgaggccgag catttcggcc cgcagtggcc
     4141 ttacgaaatg gtaggcggcg tgaacgaaaa ggggcgcggg aggtttgaag gagaggggtt
     4201 tactagagca tgtacgtcca gctctcttgc ccgttgatca tcacgacgat acgcacgccc
     4261 gcgcctttga gcgcctcgcg gacgcggcgg ttgccaatca cttggttgcc tgcctcgcgc
     4321 gtgagcgtag cgcccgagag cgaaagcgtc gaagtctgcg cgtcgccgct caccgacgcg
     4381 tgaaccttat gcccgcgcgc gcccaacccg cgcgtcacct cggagacggc tgcctcgcgc
     4441 gacatgacgg gcgggctcgc gtgcggctgc ggcgccgcgg cttgtgtcgg ctcgggcgag
     4501 gcgggcgaaa gactgacacc tgcaaccgtc gccgtcgcgc ccgcggacga atttgacgac
     4561 gcgacgggcg gaacagcctg cccgccttgc ggcgcggtgt tgtccgtccg ccccgctatc
     4621 tgtgcggcct gaatgccttg tggcgccaaa ctgctgagca ttggtgcgct gggcgacgag
     4681 gccgggttga tctgccccgc cgcaggggct ttcgcctcgg ctcgctgtgt agccgttggc
     4741 gacccggctg taatcggctg ctgtccctgt gatttagcga ctgtcccgcc tacagactgt
     4801 ccccccgcat cggcctcctc gcgcgcaagc ctgaactcgt accagactcc gcccagcgcc
     4861 caaacgcaca ggaaagtcgc cacaccggcc agcatccaca cggtcgagac gtggaggctg
     4921 cccacgacgg ggaagtggta atagagtcgg aaagccttcc cgcgccggcc tcgccggccg
     4981 cggtcggaga taagtataag gactagcgcc agcaaaatcc ccagcgggcc ggtcagaatg
     5041 cctagaagaa ggccgagccc ccggctccaa ccgtgctccc gaaacatcca gacggtaatc
     5101 aggcagggga ttacggccca gaaaaggatt gtgagcagaa tgaccagttc catatgcgac
     5161 gggcgagggg cgagaaaacg gcagaccact tttaccacac atttccgccg cacagtcacc
     5221 gttttcttca aaggggccgc ccacaacgcc cgcgggcgca agccacaacc gaccgtcgtg
     5281 gcgactgacg gcgctgctca cccggttttg taaaaaaata gccgagaaaa gcgcgcgtgt
     5341 ggacgccgaa acttgacaag tctggtaagt ctttgatatt tc
//
LOCUS       DASPKR010000021         2233 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1426363, whole genome shotgun sequence.
ACCESSION   DASPKR010000021 DASPKR010000000
VERSION     DASPKR010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2233)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2233
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1426363"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1069)
                     /locus_tag="VD968_00540"
     CDS             complement(<1..1069)
                     /locus_tag="VD968_00540"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE12913.1"
                     /translation="MKSCPTCGKQYEDSNTLCPEDGTVLKRPAGQDALLGQVLDSKYR
                     IEEKIDEGGMGCVYRATHVLMEKTVAIKVLHPALAADDKIVARFTREARAASRISHPH
                     AINVTDFGESGSGVVYLVMEYLRGRTLKDVVRGEGPLPLARVVEIVRQVSGALEAAHA
                     EGVVHRDLKSDNIMLEEAAGGGDWAKVLDFGIAKIQQDVDKTDPGLTAPNIIIGTPQY
                     MSPEQCSQASGIDARSDIYSLGVILFEMLVGHVPFTGDSPTAIMMKHLQEPPPSVLDE
                     RKDLPAAVGRVIARSLAKRPEERYQNAGELYDALASAAAEGEPLAAGAEARAAETDRI
                     VVPTAAEGAARHTAADDADEAT"
     gene            1233..1622
                     /locus_tag="VD968_00545"
     CDS             1233..1622
                     /locus_tag="VD968_00545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12914.1"
                     /translation="MKPKDSDCYVDIWKDADFRGERLRVYGPAEYPNMLFEQGDWGDH
                     VGSLRVGPHAFVMAFAGRDFRDGMITLGPNDEVARLDDVKFDDEMDSLRVIDSMKIFD
                     RLLGREGAQNEPGGDAKKHGGKHRRKR"
     gene            1619..>2233
                     /locus_tag="VD968_00550"
     CDS             1619..>2233
                     /locus_tag="VD968_00550"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE12915.1"
                     /translation="MSRDHLFVVGGVAAGLAAAMEARRRSPDLAITVLERTADISYGA
                     CGLPYVIAGRIPSLEQLYAHAPEYFRERHGIDVRLNSEALEILPARSTLRFREAGEER
                     EASYSALVIATGAAAVCPPLPGHDLGGVFVLRHMRDGRRLLRYIEEARPRAAAVVGAG
                     YIGLEMAEAFASRGLRTTLVEASDKIMSVVGGRARDLAAEELRSN"
BASE COUNT          335 a          760 c          766 g          372 t
ORIGIN      
        1 cggtcgcctc gtcggcgtcg tcggcggccg tatgtcgcgc cgcgccctcg gcggcggtcg
       61 ggactacgat gcggtcggtc tcggctgcgc gcgcctcggc gcccgcggcc aggggctcgc
      121 cctcggcggc ggcagaggcg agcgcgtcgt agagctcgcc cgcattctgg tagcgttcct
      181 cgggccgctt ggcgagagag cgcgcgatga cgcggcccac ggccgccggc aagtctttgc
      241 gctcgtcgag caccgagggc ggcggctcct gaaggtgctt catcattatg gccgtcggcg
      301 agtcgcccgt gaatgggacg tggccgacga gcatctcgaa gaggatgacg ccgagcgagt
      361 agatgtcgga gcgcgcgtct atgccggaag cctgcgagca ctgctcgggc gacatgtact
      421 gcggcgtgcc tatgatgatg ttaggggcgg tcaggccggg gtcggtcttg tcaacgtcct
      481 gctgaatctt ggcgatgccg aagtcgagca ctttggccca gtcgccgccg cccgccgcct
      541 cttcgagcat gatgttgtcg ctcttgaggt cgcggtgcac gacgccctcg gcgtgcgcgg
      601 cctctaacgc gccgctcacc tgccgcacta tctcgaccac gcgcgcgagc ggaagaggcc
      661 cctcgccgcg cacaacgtcc ttgagcgtgc gcccgcgcag gtactccatc acgagataga
      721 cgacgcccga gccagactcg ccgaagtccg ttacgtttat cgcgtgcggg tgggatatgc
      781 gggaggcggc gcgggcctcg cgcgtgaagc gggcgacgat cttgtcgtcg gcggcgagcg
      841 ccgggtgcaa gacctttatg gcgacggtct tctccatcag gacgtgcgtg gcgcgataga
      901 cgcagcccat gccgccctcg tcaatcttct cctcgatgcg gtacttcgag tcgagcacct
      961 ggccgaggag cgcgtcctgg cccgccggcc tcttcagaac cgtcccgtcc tccgggcaga
     1021 gcgtgttcga gtcctcgtac tgcttaccgc atgtcgggca acttttcatc tggtggtttg
     1081 acgcctcgcc tccgtctcgg aagggggaag tttgagcgta ccacaccgat tccgcgccgc
     1141 gcaatacgaa ggcactccgg cggtcgtcgt gttgaacgcg cgggggcgct cgggttagac
     1201 tcgcctcccg gtcgtagaga caattcccga gtatgaagcc gaaggacagc gactgctacg
     1261 ttgacatctg gaaggacgcc gacttccgcg gcgagcgcct gcgcgtgtac ggcccggccg
     1321 agtaccctaa catgcttttc gagcagggcg actggggcga ccacgtcggc agcctccgcg
     1381 tggggccgca cgccttcgtg atggccttcg ccggccgcga cttccgggac gggatgataa
     1441 cgctcggccc caacgacgag gtcgcgcgcc tcgacgacgt gaagttcgac gacgagatgg
     1501 actccctccg cgtcattgat tccatgaaga tattcgaccg cctgctcggc cgcgaagggg
     1561 cgcagaacga gccgggcggc gacgccaaga agcacggcgg caagcaccgt cgcaaacgtt
     1621 gagtagagac cacctgttcg tcgtaggcgg cgtggccgcc ggtctagcgg ccgccatgga
     1681 ggcgcgccgc cgctcccccg acctcgccat cacagtgctt gagcgcaccg cggacatctc
     1741 ctacggcgcg tgcggcctcc cttacgtcat agccggccgc atcccctcgc tcgagcaact
     1801 ctacgctcac gcgcccgaat acttccgcga gcggcacggg attgacgtgc ggctcaacag
     1861 tgaggcgctc gaaatcctgc cggcccgctc cacgctcagg ttccgcgaag ccggcgagga
     1921 gcgcgaggct tcctacagcg cgctcgtcat cgcgacgggc gcggccgccg tctgcccgcc
     1981 cctgccgggc cacgacctcg gaggcgtctt cgtgctgcgc cacatgcgcg acggccgccg
     2041 gctgttacgc tacatcgaag aggcgcggcc ccgcgcggcg gccgtcgtcg gtgccggcta
     2101 catagggctg gagatggccg aggcgttcgc gagccgcggc ctgcgcacga ctctcgtcga
     2161 ggcgtccgac aaaatcatga gcgtcgtggg cgggcgcgcg cgtgaccttg cggctgaaga
     2221 gctgcgctcg aac
//
LOCUS       DASPKR010000022         4498 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_520516, whole genome shotgun sequence.
ACCESSION   DASPKR010000022 DASPKR010000000
VERSION     DASPKR010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4498)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4498
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_520516"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..716)
                     /locus_tag="VD968_00555"
     CDS             complement(<1..716)
                     /locus_tag="VD968_00555"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12916.1"
                     /translation="MPRRTDIRKILIIGSGPIVIGQACEFDYSGTQACKALTQEGYEV
                     ALVNSNPATIMTDPETADRTYVEPLTVETVAAVIERERPDALLPTVGGQTALNLAMAL
                     SDAGVLERYGVEMIGAKREAIRIAEDRELFKQAMDEEGLPVPRGGFAHSWAEAEKIVE
                     ETGYPAIIRPSFTLGGTGGGTAYHPEEFQEIVRAGLAASPVGQVLIEESILGWKEFEL
                     EVMRDIADNVVIICSIENFDP"
     gene            892..2058
                     /locus_tag="VD968_00560"
     CDS             892..2058
                     /locus_tag="VD968_00560"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE12917.1"
                     /translation="MLRPRALIFALFLVLFNAATAAAQTPRKAEDFYNRGIQRQAAGD
                     LEGAIADYTEAIKRDPRMHDAYNNRANVLLQKGDTAAAFADYAKVIEINPGDFMGYYN
                     RGVAYLNNSEHDKAAADFDRAIALNPRVAMVYNNRGNARQAKGDEAGALADYDKAIEL
                     APEMAIALNNRGVLHQNAGRLDAALADFNRAVAVAPRFAAAYNNRGAVMRAKGDARAA
                     LADFDKAVELAPEEAEYYFNRGITHQAAGDPDGAIADLDRAVALNPQASEHYTQRGVS
                     RQAKGDAAGALADFNKALELNAADALAYVNRGLLRQARGETDAALADYSQAVVINPQL
                     APAYANRGVIRLQKGQDKLAEQDFAEAIKLDASLKPSLEKYLEEMRKRAAKARK"
     gene            complement(2129..2950)
                     /locus_tag="VD968_00565"
     CDS             complement(2129..2950)
                     /locus_tag="VD968_00565"
                     /inference="COORDINATES: protein motif:HMM:NF013828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE12918.1"
                     /translation="MSSDKAKKIPPLFAVPERGAVADAPAESVQPARSTEAKAPAVCP
                     LCFGTGLEVVPGRGARKCECRAQDARSKLFQQARIPRRYEHCSLQNFYNVKGNSYIWR
                     AFGEAQRLIKEYYPGCDRGLLFMGPVGVGKTHLSVAILQGLIELGVPCLFYEFGALLK
                     EIQDSYNPVSKSSEMGVLSPVYQAEVLVLDELGASKPTDWVRDTMMQIINTRYNDKKL
                     TVFTTNYFDTRRSPTDETLEDRIGVRLRSRLYEMCKTVLIEGEDYRKRFDSTKQS"
     gene            complement(3225..4133)
                     /locus_tag="VD968_00570"
     CDS             complement(3225..4133)
                     /locus_tag="VD968_00570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12919.1"
                     /translation="MPPRPARSASVAIVLLAALSQMPRLFAQTARRGGQDTVIFAVEK
                     FDAVQIEPVVIYRRGAFVKPPVEETDAPGQSVENRAQAFVKEYFRPGRRLRLLFGGGE
                     SGSVSVVKYIEPGCVGLWAEVKAETQAKLGGNVQALATDSATLGRGPSSRRAPTEQER
                     AEALELARAAYAKNGVGAALVKKMQVTNLTATDLDRDGKSELVGSFLIDTRANSNEPI
                     DEAYALFVIFEPAGDKLKAGMTWFHHGSEAEFAERRFVDQLDIDGDGVGEVIAEGRYY
                     ESNDYVIYKRRQGRWQSVYQGGGGGC"
     gene            complement(4153..>4498)
                     /locus_tag="VD968_00575"
     CDS             complement(4153..>4498)
                     /locus_tag="VD968_00575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12920.1"
                     /translation="SVVVTLRFADGSNGCVAYLAEGDRALAKERVEIFGGGRSFVLED
                     FRAASLYSGGREEKLKLRAQDKGQAAQARAVCAVVAGGGQAPTALEDLAATSRATFRI
                     LESLRTGQAVDV"
BASE COUNT          764 a         1543 c         1413 g          778 t
ORIGIN      
        1 gggtcgaagt tctcaatcga gcagatgatg acgacgttgt ccgcgatgtc gcgcatcacc
       61 tccagctcga actccttcca gccgagtatg gactcctcta tgagcacctg cccgacgggc
      121 gaggcggcga gccccgcccg cactatctcc tgaaactcct cggggtggta ggccgtcccg
      181 cctcccgtcc cgccgagcgt gaaagagggg cggatgatgg cggggtagcc cgtctcctcc
      241 acgatctttt cggcctcggc ccaggagtgc gcgaagccgc cgcgcgggac gggcaggccc
      301 tcctcatcca tcgcctgctt gaagagctct cggtcttcgg ctatgcgtat ggcctcgcgc
      361 ttcgcgccta tcatctcgac gccgtagcgc tccagcacgc ccgcgtccga gagcgccatc
      421 gccaaattca gcgcagtctg accgccgacc gtgggcagca gcgcgtcggg ccgctcgcgc
      481 tctatgacgg cggcgacggt ctcgaccgtg agcggctcga cgtatgtgcg gtcggccgtc
      541 tccgggtcgg tcatgatagt cgccgggttc gagttgacga gggcgacctc gtagccctcc
      601 tgcgtgagcg ccttgcacgc ctgcgtcccc gagtagtcga actcgcaggc ctgccctatt
      661 acaatcggcc ccgacccgat gattaagatt ttgcgtatgt ctgtgcgtct tggcatcgaa
      721 gattcatgct accgggataa atgaaatcgg ggcattatac acgcaggcgc ggcgcggcat
      781 gaaccggccg cgccgcgccc gccgctggca tcgaaggggg cctcgccggg catcaaaaca
      841 ggcccggctt tcacagactt tgcgtataat aacgccaccg gagattcaat gatgctcaga
      901 ccgcgcgcgc tcatcttcgc gcttttcctc gtgcttttta acgcggcgac cgccgccgcg
      961 cagacgccac gcaaggccga agacttctac aaccgcggga tacagcgtca ggccgcgggc
     1021 gacctcgaag gcgcgatcgc cgactacact gaggccatca agcgtgaccc gcgcatgcac
     1081 gacgcctaca acaaccgcgc caacgtccta ctacagaagg gcgacaccgc ggccgccttc
     1141 gccgactacg ccaaagtcat agagattaac cccggcgact ttatgggcta ctacaaccgc
     1201 ggcgtcgcgt acctcaacaa ctccgagcac gacaaggccg ccgcggactt cgaccgcgcc
     1261 atagccctga accctcgggt cgcgatggtc tataacaacc gcggcaacgc gcgtcaggcc
     1321 aaaggcgacg aggcaggcgc gctcgcagac tatgacaagg cgattgagct cgcgcccgag
     1381 atggcgatag cgctcaacaa ccgcggcgtg ctccaccaga acgccgggcg gctcgacgcg
     1441 gcgctcgccg acttcaaccg cgccgtcgct gtcgcgcccc gcttcgccgc cgcctacaac
     1501 aaccgcggcg ccgtcatgcg cgccaaaggc gacgcgcgcg ccgcgctcgc cgacttcgac
     1561 aaggccgtgg agcttgcgcc cgaggaggcc gagtattact tcaaccgcgg catcacgcac
     1621 caggccgcgg gcgaccctga cggtgccatc gccgacctcg accgagccgt ggcgctcaac
     1681 ccgcaggcga gcgagcacta cacgcagcgc ggcgtctcgc ggcaggctaa gggcgacgcg
     1741 gccggcgcgc tcgctgactt caacaaggcc ctcgagctta acgcggccga cgcgctcgcg
     1801 tacgtcaacc gggggttgct ccgccaggcg cgcggcgaga cggacgcggc gctcgccgac
     1861 tactcgcagg cagtcgtcat caacccgcag ctcgcccctg cctacgccaa ccgcggcgtc
     1921 atacgcttgc agaaggggca ggacaagctg gccgagcagg acttcgccga ggccatcaaa
     1981 ctcgacgcga gcctcaagcc ctcgctcgaa aagtacctcg aagagatgag gaagcgggcc
     2041 gcgaaggcgc gcaagtaaaa cccgccgccg aaaacgaaaa ggggcgagtc tgctctcgcc
     2101 cctttcgccg aactcaattt cttccctctc acgactgctt cgtcgagtca aagcgcttgc
     2161 ggtagtcctc gccctcgatg aggacggtct tgcacatctc gtagagtctg ctacgcaaac
     2221 gcacgccgat gcggtcttcg agcgtctcgt ccgtgggcga gcgccgcgtg tcgaagtagt
     2281 tggtcgtgaa caccgtcagc ttcttgtcgt tgtagcgcgt gttgatgatc tgcatcatcg
     2341 tgtcgcgcac ccagtcggtc ggcttcgacg cgcccagctc gtccagcacc agcacctcgg
     2401 cctgatagac cggcgagagc actcccatct ccgaagactt cgacacgggg ttgtacgagt
     2461 cctgtatctc cttgaggagc gccccgaact cgtagaagag gcatggcacg cccaactcta
     2521 tcaacccctg aagtatcgcg accgagaggt gcgtcttgcc gacgcccact ggccccatga
     2581 agagcaggcc gcggtcgcag ccggggtagt attccttgat gagccgctgc gcctcgccga
     2641 aggcgcgcca gatgtaactg ttgcccttga cgttgtagaa attctgtagc gagcagtgct
     2701 cgtagcggcg cggtatgcgt gcctgctgga agagcttcga gcgcgcgtcc tgcgcgcggc
     2761 actcgcactt cctcgccccc cggcccggca cgacttcgag ccccgtcccg aagcagagcg
     2821 ggcagacggc gggcgccttt gcttccgtcg agcgcgcggg ctggacactc tcggcgggtg
     2881 cgtcggcgac cgcgcccctc tcaggcacgg cgaacagcgg cggaatcttt ttcgctttgt
     2941 ccgacgacat ccttaccgac ttgctttgtc tttagtggcc gcgcgggggt gttgctcttt
     3001 gcgcgggagg ctctctcgct ctcagtgtga agccgcgccc tcttcgggcg acgcggatta
     3061 tagcactcga aggagagatt gcaagacaat ctctcatgcg cgcatcgcgg cgcgaaagcc
     3121 cgcgtatttc gaggcaaaac tcgcccgcga gaatctaatg ttactgcccg tcggcatgcg
     3181 gctttttaat tccctttttt ccacaagtgg aaaagttttc gccctcagca gccgcccccg
     3241 ccgccctgat agacgctctg ccagcggccc tgtcgtcttt tgtagatgac gtagtcgttg
     3301 ctctcgtagt agcggccttc ggctatgacc tcgccgacgc cgtcgccgtc aatgtcgagt
     3361 tggtcaacga agcgccgctc ggcaaactcc gcctcgcttc cgtggtggaa ccacgtcatc
     3421 ccggctttta gcttgtcgcc cgcgggctcg aagatgacga agagcgcgta ggcttcgtct
     3481 atcggctcgt tcgagttggc gcgagtgtct atgaggaagc tcccgaccag ctccgacttt
     3541 ccgtcgcggt cgaggtcggt cgcggtcagg ttcgtcacct gcatcttctt gacgagggcg
     3601 gcgccgaccc cgttcttcgc gtaggccgcg cgcgcaagct caagggcctc ggcgcgctcc
     3661 tgctcggtcg gcgcgcgccg cgaagaaggg ccgcggccga gcgtggcgga gtcggtcgcg
     3721 agcgcctgga cgttgccgcc gagcttcgcc tgcgtctcgg ccttcacctc cgcccagagg
     3781 ccgacgcagc cgggctcgat gtatttgacg acggagacgc tgcccgactc gcctccgccg
     3841 aacagtagcc gcaggcgccg gcccggccgg aagtactcct tcacgaaagc ctgcgcgcgg
     3901 ttctctacgc tctggcccgg cgcgtccgtc tcctcgacag gcggcttgac gaaggcgccg
     3961 cgcctgtaga tgacgacggg ctcaatctgt accgcgtcaa acttctcgac ggcgaagatg
     4021 acggtatcct ggccgccgcg ccgcgcggtc tgcgcgaaga ggcgaggcat ctgcgatagg
     4081 gctgcgagga ggacgatggc gacgctagcg gagcgggcgg gtcggggggg cattcgtttc
     4141 ttctctccga gattaaacgt caacggcctg gcccgtgcgc aggctctcca aaattcggaa
     4201 ggtggcgcgg ctggtggcgg ccaggtcttc gagcgctgtt ggcgcctgcc cgcccccggc
     4261 gacgacggcg cagacggcgc gcgcctgcgc ggcctgcccc ttgtcctgcg cgcggagctt
     4321 gagcttctcc tcgcgcccgc ccgagtagag agaggccgcg cggaagtctt cgaggacgaa
     4381 ggagcggccg ccgccgaaaa tctcgacgcg ctctttcgcg agcgcgcggt cgccttcggc
     4441 gaggtaggcg acgcagccgt tcgagccgtc ggcgaagcgc agagtcacca ccacgctg
//
LOCUS       DASPKR010000023         6269 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_650032, whole genome shotgun sequence.
ACCESSION   DASPKR010000023 DASPKR010000000
VERSION     DASPKR010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6269)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6269
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_650032"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..263)
                     /locus_tag="VD968_00580"
     CDS             complement(<1..263)
                     /locus_tag="VD968_00580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12921.1"
                     /translation="MDGSGYSHDPGSDTLILTEGAPDPLVVGVGVAEDTYDSGTYETS
                     TSTVLTSPDGTSASSTSDGWYYARAEAAMGMNVETAAEGEYKV"
     gene            complement(499..1209)
                     /locus_tag="VD968_00585"
     CDS             complement(499..1209)
                     /locus_tag="VD968_00585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12922.1"
                     /translation="MKKRVLTSMLLTIVLSAFGVAAAMSKADESRAGKGAAGAAGPVQ
                     PAPPPPQQGGPDASTVDGSKTPELIPDHVAYSLLFRFLSERKSADEKERGRAYLKAMF
                     GCSHCGDHKERPESLSNDQMEALLAAAQEFGRQVSELDKRALRIRYQIPPEQGDVDLS
                     GLRGQQPPLPDAAAKAELARLQKEKEALTVRMAASLPARLGKDGAGKVQQFVRDVFKR
                     KIKYRPKSDNSSAAGNPA"
     gene            1866..4406
                     /locus_tag="VD968_00590"
     CDS             1866..4406
                     /locus_tag="VD968_00590"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE12923.1"
                     /translation="MPLPPNTRLGRYEIRSQIGAGGMGEVYLAEDTGLRRKVAIKVLP
                     ESLAQDKARLRRFEQEAFAASALNHPNILTIHEFGAEGGTHFIASEYVDGATLRARLL
                     HAPFTLGEALDVAIQIAQALAAAHEAKIIHRDIKPENIIVRRDGYVKVLDFGLAKLGE
                     HVPSAASAGSEHPTKPLLRTEAGKVIGTAPYMSPEQARGIPLDARTDIWSLGVVIYEI
                     LTGHMPFSGETRTDVIVSVLSREPLPISSYGRDVPPELVRVVSKALSKEVAGRYQTAT
                     ELRLDLEKIKKQLEFGESVNSSAGHNREEKERAPFTAATAHPTANDANVRTGGALDGA
                     AGTRNARPSPGLAGYLRPAQSRGAVYPALALALLAVVSAVAYFVLATSVDNRRIDSIA
                     VLPFENLSGNPGLTFVSDGLSEALIDRLSQLPQLKVISRHSSFAFRGANIDLRDVAAK
                     LGVRAIVTGNVAQVGDELVVRLDVVDAVENRHLTGVRFRRRPSDLLSVQSEIAQKATE
                     QLQVKLTDAQSKRLSENGTENSEAYRFYLSGLVELNGPQDVRGRALEYFERAVALDPD
                     FAAAHSEIAWVHWSRANGSSDPQALMPKAKAATERALAIDPDLAKAHVLKALLSEYEF
                     DWQGAEGEYRRAIELSPNLGFARNNYAFYLSVMGRQEDALAELEQQRIRDPINQRLAL
                     LQKGIILTQAKRFDEALQTYQEAQAVEPEREIPYFSLGYAYAGKGLYNEAAAYYKKSI
                     SLLGGEEKYSQPLVYLAAAYARMPEKRGEARAILRRIEAMSDYSSPALLAAAYSALDD
                     KDKAMVLLERSYIERDPLLRFIGTGYEYDGLRADPRFAGLTRRVGLSR"
     gene            complement(4430..>6269)
                     /locus_tag="VD968_00595"
     CDS             complement(4430..>6269)
                     /locus_tag="VD968_00595"
                     /inference="COORDINATES: protein motif:HMM:NF015380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="clostripain-related cysteine peptidase"
                     /protein_id="HYE12924.1"
                     /translation="GTMNNKEWTIMIYMAGDNNLAVDMAYAMEQIKGVVGEGANSPNL
                     FVYYDGNSPEIPTLYCDFSVPGKPKYVRSFMVPDKLYPVPAKHNENAAHRFSVVNFVN
                     WCVNKVEVEEGGEVTYGRRANRYALIFSGHSLGFQDVGLFRDETTGKSMKMEELYRTL
                     RRVVDTEGELKRKAKKDGLVGQELERETKELLGQRLDLLGFDSCVMGMLEVGYQFYPV
                     AETMIVSEGSVPNAGWTYAKILGSLACERGGDGVPQKVAEQFVRDFIKGQDAYTVGGV
                     SVDMAAWDLRYFIELIKAFDMLAEILTTCFDEEGSRIYRQMERVILQTHWRCQSYMYD
                     QNVDIGDFCELLDQECDRVIEELGGGDDVEILKEVQKRCRKVQDKLRKVVIVSGFSGG
                     AYQYSNGVSVFFPWSRDGYEVSRKNYESLYFSKEVKQNRRFSWTGFLKKYLYEVALRK
                     SEPATPFSPPGAKYRYDSGIKFAERSDSTTLAGEVGSKIAGQEGSKIAGQEGSKIAGQ
                     EGSKIAGQEGSKIAGQEGSKIAGQEGSKIAGQEGSKIAGQEGSKIAGQEGSKIAGQEG
                     SKLGGGGSAAFFNSLRLFKNIESRWDISGFTKKAEGSDLETPDADG"
BASE COUNT         1187 a         1949 c         1868 g         1265 t
ORIGIN      
        1 tcgaccttgt actccccctc ggcggcggtc tccacgttca tccccatggc ggcctcggcg
       61 cgcgcgtagt accagccgtc ggaggtggac gaagcgctgg tgccgtccgg gctcgtcagg
      121 actgtgctgg tcgaagtctc atacgtgccg ctgtcgtagg tgtcttccgc aaccccgacg
      181 cctaccacca aggggtcggg ggctccctcc gtcagaatga gtgtgtcgga gccggggtcg
      241 tgcgagtacc cggagccgtc cacagagtaa gagtccgaat actcggcctg accgaaggcc
      301 gaaggcgcgg cgagagcaca aaggagtgtc gccgcgatga acagacgaaa gcagggcgcg
      361 ggggcgtgac tctctcgccg cccctgtcgt cgggcgctct cattcgggat catggcaaga
      421 acctccttta ctttgcagca aggtttcagg cgaggtgacg cttcggcgcc cgcgcgtgac
      481 ttcgcgcggc gcgacgaatc aggccgggtt cccggcggcg gaggagttgt ccgacttcgg
      541 gcggtacttt atcttgcgct tgaagacatc ccgcacgaat tgctgcacct tcccggcgcc
      601 gtccttcccc aggcgggccg gcagcgaggc cgccatccgc actgtaagcg cctccttctc
      661 cttctgtaac cgggccaact cggcttttgc agccgcgtcc gggaggggag gttgctgccc
      721 ccggagcccc gacaaatcta cgtccccctg ttcaggaggg atttgatacc tgatgcgcag
      781 cgcccgctta tcgagctcac tcacctgacg cccgaactcc tgcgcggccg ccagcagcgc
      841 ctccatttga tcgttagaga ggctctccgg ccgctcctta tggtcgccgc aatgcgagca
      901 cccgaacatc gccttcaggt aggcgcggcc tcgctctttt tcgtccgcgc tcttacgctc
      961 ggagagaaac cggaagagca gcgaataggc tacgtggtcg gggatcagtt cgggagtttt
     1021 cgacccgtcc acagtcgagg cgtcggggcc gccctgttgc ggcggcggcg gcgcgggctg
     1081 aaccggcccc gcggcgcccg cggcgccctt tcccgcccgg ctttcatccg ccttcgacat
     1141 cgcggccgcg actccgaagg cactcagaac gattgtgagc agcatgctcg taagcactct
     1201 cttcttcatg aggtgtctcc tcccctgtgt gagttttcag gaaccagggc gcacacgggt
     1261 gcgcgccacg agccgcactt caagggctcg tgttcttaag agctagccgg tataagaata
     1321 atgaggaaga gccggaaggg cgcggcgctt tccctgtccg ggacggccga actaccgaac
     1381 gggaaaaagt cgaacagtca ccaacaagaa gcgattgcta accttccaac tctttccgga
     1441 atcagacagc ttcggggccg cgagggcgcc cgcgaaccac gcaaaaaaat tgtcgggggc
     1501 cgtcaaccga gtggggagat tgacgataaa tcggacgcct tttttgaagg cgcgcgtata
     1561 gataaaccaa cgcgcccggc ctgtcaaatg gaaaaaattt agcgaagctg taacaaaatt
     1621 ttatcgcgtc aggagggccg cccctgggcc cggcaggtgc ggccgagcgg gggccgacgg
     1681 cctcggcgac gtgcgcgggg aggttgatgc agtcgagtta gatggccgcg cgtcggccgt
     1741 taaagtggtc atactcatgc cgatttttca gtagcctcaa gaattatagc ccttttactt
     1801 tccaccgccc tgttataaag tcttgcgcaa attgcggccg cctcgcaatt accataatta
     1861 cgaatatgcc gcttccccct aacacgcggc tggggcgcta cgaaatccgc tcacaaatcg
     1921 gtgcgggcgg gatgggcgag gtgtatctgg ccgaagacac agggttgcgc cgtaaggttg
     1981 cgattaaggt gttgccggaa tcactcgcgc aggacaaagc ccgcctgcga cgcttcgagc
     2041 aggaagcctt tgctgcttcg gccctgaatc acccgaacat cctgacgata cacgaattcg
     2101 gcgcggaagg cgggacgcat ttcatcgcct cggaatacgt tgacggcgcg acattgcgcg
     2161 cccgcctgct acacgccccc ttcacactcg gtgaggccct ggatgttgcc attcagattg
     2221 cgcaggccct cgccgccgcg cacgaagcga agatcattca ccgcgacatc aagcccgaga
     2281 acatcattgt caggcgcgac gggtacgtca aggtgctcga cttcggcctg gctaagctcg
     2341 gcgaacatgt gccctcggcg gcgagcgcgg ggtctgagca cccgaccaag cccctgcttc
     2401 gcaccgaggc cggcaaggtg atcggcacgg ccccctacat gtcgcccgaa caggctcgcg
     2461 gcattcccct tgatgccagg acggacatct ggagcctggg cgtggtcatc tatgaaattc
     2521 tgacggggca tatgccgttt tccggcgaaa cccggaccga cgtcatcgtc tctgtgcttt
     2581 cgcgtgagcc gctcccgatt tcttcgtacg ggcgagacgt tccgcccgag ctcgtgcggg
     2641 tagtttcaaa ggcgctctcg aaagaggtgg caggaagata tcaaaccgcg acggaattgc
     2701 ggcttgacct ggagaagatc aaaaagcagc tcgaattcgg cgagagcgta aacagttcgg
     2761 cgggccacaa ccgggaggag aaggaaaggg cccctttcac ggcggcgacg gcccacccga
     2821 cagcgaatga cgctaacgtt agaacgggcg gcgcgctcga cggggccgcc ggcacgcgta
     2881 acgcccggcc gtcgcctggc cttgcaggtt atttacgccc ggcccaatcc cgcggggccg
     2941 tttacccggc cctcgcgctg gctctgttgg ctgtggtttc cgccgtcgcc tattttgttc
     3001 tcgctacgtc tgttgacaac cggcggatag attcgatcgc ggttctcccg ttcgagaatt
     3061 taagcggtaa cccgggcctg accttcgtat cggacggcct gagcgaggcc ttgatagacc
     3121 ggctctcgca gttgcctcag ttgaaagtca tctcccgcca ttcgagtttc gcgttccgcg
     3181 gggcgaatat agacctgcgc gacgttgcgg ccaaattggg tgtgcgggcg atcgtgacgg
     3241 gcaatgtggc tcaagtcggc gacgaactgg tcgtcaggct tgacgtcgtg gacgccgtcg
     3301 agaacaggca cctgacgggg gtgcggttcc ggaggagacc tagcgacctt ctgagtgttc
     3361 agagtgagat agcccagaag gctaccgagc agctgcaggt aaaactgact gacgcgcagt
     3421 caaaacgtct ctccgagaac gggactgaga actccgaggc ttatcgcttt tacctcagcg
     3481 gcttggtcga attgaacggg ccgcaggatg tgcgtggccg ggcgctcgaa tatttcgagc
     3541 gggcagtggc gctcgacccg gatttcgccg cggcccatag cgagatcgcc tgggttcact
     3601 ggtcccgggc gaacggcagc agcgacccgc aggcactaat gccgaaggcg aaggcggcga
     3661 cggagcgggc cctcgcaata gaccccgacc tcgcgaaagc ccacgtcctc aaggcgctgt
     3721 tgagcgaata tgagttcgac tggcagggcg ccgagggaga gtacaggcgg gcgattgagc
     3781 tgagccctaa tctcggcttc gcccggaata actatgcgtt ctatctttcg gtcatgggcc
     3841 ggcaggagga cgccctcgcc gaactcgaac agcagcgaat ccgtgacccg atcaatcagc
     3901 gcctggcgct gctacagaaa ggcatcatcc tcacgcaggc gaagaggttc gacgaggcgc
     3961 ttcagaccta tcaggaagct caggccgtag aaccggagag agagataccg tacttctctt
     4021 tggggtacgc ctacgccggg aagggtctct ataacgaggc cgcggcgtac tacaagaaat
     4081 ccatcagcct gctcggcggt gaagagaaat acagccagcc cctcgtctat ctggccgcgg
     4141 cctacgcgcg catgccggag aagcggggcg aggcgcgtgc catcctgcgc aggatagagg
     4201 cgatgagcga ctactcctcc ccggctcttc tggccgccgc ctactcggcg ctagacgata
     4261 aagacaaggc gatggtgctg ctggagcgtt cgtacatcga gcgcgacccg cttctgcgat
     4321 ttatagggac gggctacgag tacgacgggt tgcgcgccga cccgcgcttc gcgggcctga
     4381 cgaggcgggt cggtctcagt cgttagaggg ccggcgagcg gtgatgagtt tagccgtcgg
     4441 cgtcaggcgt ttctaggtcg gaaccctcgg cctttttcgt gaagcccgaa atgtcccagc
     4501 ggctctcgat gttcttgaag agccgcaagc tgttgaagaa cgcggccgag ccgccgcccc
     4561 caagtttaga gccttcctga cccgcaatct ttgagccttc ttggcctgca atctttgacc
     4621 cctcttgccc cgcgatttta gaaccttcct gcccggctat tttcgaccct tcctgcccgg
     4681 caatctttga accctcctga cccgctattt tggaaccctc ttgacctgcg attttagagc
     4741 cttcttgccc ggctattttt gaaccttctt ggcctgcaat cttcgaccct tcttggccgg
     4801 ctatcttcga gccgacctca cccgcgagcg tcgtcgagtc agaccgctcg gcgaatttta
     4861 ttcccgaatc gtacctgtac ttcgcgccgg gaggggaaaa cggcgtcgcc ggctcggact
     4921 tgcggagggc gacttcgtag aggtatttct taaggaaccc cgtccaagag aagcggcggt
     4981 tttgtttcac ctccttggaa aaatagaggc tctcgtagtt cttccgcgac acctcgtagc
     5041 cgtcgcgcga ccacgggaaa aacaccgaca ccccgttcga gtactggtaa gctcccccgc
     5101 taaatccgct gacgatgacg acctttctta gcttgtcctg caccttccga catctttttt
     5161 gcacctcctt caaaatctcc acgtcgtcgc cgccgccgag ttcctcgatg acccggtcac
     5221 attcctgatc cagcagctcg cagaaatcac cgatgtcaac attctggtcg tacatgtacg
     5281 actgacatct ccagtgggtc tggagtatga ctcgctccat ctgcctgtag atgcggctcc
     5341 cctcttcgtc aaagcatgtg gtgagaattt cggccaacat gtcgaacgct ttgatcagct
     5401 cgatgaaata gcgtaagtcc cacgcggcca tgtcaaccga gacgccgccc accgtgtaag
     5461 cgtcctgccc cttgatgaaa tccctgacga attgctccgc cactttttgg gggacgccgt
     5521 cgccgccccg ctcgcaggct aaacttccga gtatcttggc gtacgtccag ccggcgttcg
     5581 ggacgctgcc ctcggagacg atcatcgtct cggcgacggg gtagaactgg tagcccactt
     5641 cgagcatgcc catcacgcag ctgtcgaacc ccaagaggtc gagccgttgg ccgagcaact
     5701 ccttcgtttc gcgctccagt tcctgaccca ccagcccgtc tttcttcgcc ttgcgtttta
     5761 attcgccctc cgtatccacg acccgtctga gcgttcgata cagctcctcc atcttcatgg
     5821 atttgcccgt ggtctcgtct ctgaataagc cgacgtcctg aaagccgagg gagtggccgg
     5881 aaaagatgag cgcgtacctg ttggcgcggc ggccgtatgt gacctcgccg ccctcttcga
     5941 cctcgacctt gttcacacac cagttaacaa aattcaccac cgagaagcgg tgcgcggcgt
     6001 tctcgttgtg cttggccggg acggggtaga gcttgtctgg caccatgaac gagcggacgt
     6061 acttcggctt gcccggcacg gagaaatcac aatagagggt cggtatctcc ggcgagttgc
     6121 cgtcgtaata gacgaacagg ttcgggctgt tagcgccttc gcctaccacc cccttgatct
     6181 gctccatggc gtaggccatg tcaacggcca agttattatc gccggccatg tagatcatga
     6241 ttgtccattc tttgttgttc atcgttccg
//
LOCUS       DASPKR010000024         2489 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_909108, whole genome shotgun sequence.
ACCESSION   DASPKR010000024 DASPKR010000000
VERSION     DASPKR010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_909108"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..590)
                     /locus_tag="VD968_00600"
     CDS             complement(<1..590)
                     /locus_tag="VD968_00600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12925.1"
                     /translation="MTVKPSRREFTAREWRVVESHRTPASVQMFLSRLSYNREPCGAT
                     LRTFREVVRRGEAHCLEAALTAAVILEQHGYPPLLLSLESQDKLDHVLFVFRERGLWG
                     SVARSRDLGLHGRRPVFRTIRQLVWSYFEPYVDSTGRITGYGLASLRDLGDYDWRFSR
                     KNVWKVERHLQEIPHTPLRSSDARYRRLLARYKEFRA"
     gene            852..1037
                     /locus_tag="VD968_00605"
     CDS             852..1037
                     /locus_tag="VD968_00605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12926.1"
                     /translation="MHSAAERLTGQINDALTAVAAQAPEGVQELDALADRLERAARDM
                     AVAMRELAEERQQQGDE"
     gene            1274..>2489
                     /locus_tag="VD968_00610"
     CDS             1274..>2489
                     /locus_tag="VD968_00610"
                     /inference="COORDINATES: protein motif:HMM:NF006820.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HYE12927.1"
                     /translation="MTAIKQSPAREHGRKHSGVGLDACGIQGAPNVYWNLTTPELYEV
                     IVRRGEGVLSAHGALLVDTGEHTGRAAKDKAIVREPLSEDKVFWGEVNKEFPQGAFDR
                     LRDRMMRHASTLDLFVQDTYAGADPRYRLPVRVVTELAWHSLFARTMFINDDEGKANH
                     RPEFTIVNLPSFKADPAADGTRSQTFILMDFSKRLVLIGGTSYAGETKKSVFTILNYL
                     LPQRGVMSMHCSANVGQSGDVAIFFGLSGTGKTTLSADPARRLIGDDEHGWSDDGVFN
                     FEGGCYAKVIKLSEEAEPDIYRTTRMFGTVMENVVFDPATRLPDLDDASRTENTRAAY
                     PLTSIPNIVPEGYAGHPSNIIMLTADAFGVLPPVAKLTPEQAMYHFLSGYTAKVAGTE
                     RGVTEPQATFSTC"
BASE COUNT          466 a          832 c          821 g          370 t
ORIGIN      
        1 gcgcggaact ccttgtagcg cgcgagcagg cggcggtagc gcgcgtcgga ggagcgcagg
       61 ggcgtgtgcg gtatctcttg caggtggcgc tcgaccttcc agacattttt gcgcgagaag
      121 cgccagtcgt agtcgcccag gtcgcggagg ctcgccagcc cgtagccggt tatgcggccc
      181 gtgctgtcaa cgtaaggctc gaagtagctc caaacgagct gccttatcgt gcggaacacg
      241 ggccgtcggc cgtgcaggcc gaggtcgcgc gagcgtgcga cggagcccca caggccgcgc
      301 tcgcggaaga cgaagaggac gtggtcgagc ttgtcctgcg actccaagct gaggagcagc
      361 ggcgggtagc cgtgctgttc gagtatgaca gcggccgtga gcgccgcctc aaggcagtgc
      421 gcctcgcctc gcctcacgac ctcgcggaac gtgcggaggg tcgcgccgca cggctcgcgg
      481 ttgtagctca gccgcgaaag gaacatctgc acgctcgcgg gcgtcctgtg cgactcgacc
      541 acccgccact cccgcgccgt gaactcacgc ctcgaaggct taacggtcat cagccggaag
      601 caataacaga aaaaccacgg ggaggccaaa cggctgcctc tgctttcggc ctgccctcgg
      661 cttgaaaccg cgcgccgttt ggtgttaaga gatagctaaa gcgaaatcat tctggtatgt
      721 tgtttcgggg gcgcggcgcc taagcgcgac cgccccgcgc ggtaaaattt tgacgagcga
      781 gccgggttaa tcttgtgagc agcaatagta cgacttcccc ctcgaaaatt tcgacgcgcg
      841 ccgaaaagga agtgcattcg gcggcggagc ggctgacggg acagataaac gacgcgctca
      901 cggccgtagc cgcgcaggcg ccggaaggcg tgcaggagct ggacgcgctg gccgaccgcc
      961 tcgagcgcgc ggcgcgcgac atggccgttg ccatgcgcga gcttgcagag gagcgccagc
     1021 agcagggcga cgagtaggcc ccgctcgcgg cagactttca aagggctcat agaacgggag
     1081 cgctcccgcg cgcgccgcaa gcggccagcg cgcggccggc gctcctgcgt gcgtaagccc
     1141 caaatttgtt cggcgggcca acaaaggaaa ggcagaggcc gggcggcgag cccttggcgc
     1201 gcgacgaagg ccacaggccg acggcccgtt tacggtttac tattcaaagc ccgccgtccg
     1261 acgaggagaa tttatgaccg caattaaaca gagcccggcc agagagcacg ggcgaaagca
     1321 ttcgggcgtg gggctagacg cctgcggcat acagggcgcg cccaacgtct attggaacct
     1381 gacgacgccg gagctctacg aggtaatcgt gcgccgcggc gagggcgtcc tgtccgccca
     1441 cggcgcgctg ctggtggaca cgggcgagca cacaggccgc gccgccaagg acaaggccat
     1501 cgtccgcgag cctttgtcgg aagataaggt cttctggggc gaggtcaaca aggagttccc
     1561 gcaaggggcg ttcgaccgcc tgcgcgaccg gatgatgcgc cacgcctcga cgctcgacct
     1621 cttcgtgcag gacacctacg cgggcgctga cccgcgctac cgcctgcccg tgcgcgtcgt
     1681 gacggagctt gcgtggcact cgctcttcgc ccgcacaatg ttcatcaacg acgacgaggg
     1741 caaggccaac cacaggcccg agttcaccat cgtcaacctg ccgagcttca aggcagaccc
     1801 cgcggccgac ggcactcgct cgcagacctt catcctgatg gacttctcga agcgcctcgt
     1861 cctcatcggc ggcacctcct acgcgggcga gacgaagaag agcgtcttca ccatactcaa
     1921 ctaccttctg ccgcagcgcg gcgtgatgag catgcactgc tcggcgaacg tcgggcagtc
     1981 gggcgacgtt gctatcttct tcggcctctc ggggacgggc aagacgaccc tgagcgccga
     2041 cccggcccga cgactcatag gcgacgacga gcacgggtgg agtgacgacg gcgtcttcaa
     2101 cttcgagggc ggctgctacg cgaaggtcat caagctctcc gaggaggccg agcccgacat
     2161 ctaccgcacg acgcgcatgt tcggcaccgt catggagaac gtcgtcttcg acccggcgac
     2221 gcgcctcccg gacctcgacg acgcctcgcg cacggagaac acgcgcgcgg cctaccccct
     2281 gacgagcatc ccgaacatcg tgcccgaggg ctacgccgga cacccttcga acatcatcat
     2341 gctcacggcc gacgccttcg gcgtgctccc gcccgtggcg aagctcacgc ccgagcaggc
     2401 gatgtaccac ttcctctcgg gctacaccgc gaaggtcgcg ggcaccgagc gcggcgtgac
     2461 cgagccgcag gcgaccttct cgacctgct
//
LOCUS       DASPKR010000025         4098 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_650188, whole genome shotgun sequence.
ACCESSION   DASPKR010000025 DASPKR010000000
VERSION     DASPKR010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4098)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4098
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_650188"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..484
                     /locus_tag="VD968_00615"
     CDS             <1..484
                     /locus_tag="VD968_00615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12928.1"
                     /translation="ICGAMWLMFKYLQGREEAEELTPSPLARQREERLPPEPRLQLAP
                     GFKAKTSDGREVDLTYDIQAPTERAPQPQSEYWVVLADWQHQLHTYGWADEKAGTVRI
                     PVDEAIKRYAAQQQSKQQQQQPGGAQGRPTTGAQQQAVPGESQPSQSSSGHQAEPRHQ
                     "
     gene            481..1413
                     /locus_tag="VD968_00620"
     CDS             481..1413
                     /locus_tag="VD968_00620"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HYE12929.1"
                     /translation="MTYGSYKSGVISWKTKGAQRVFARLPLSAFCLLWLAAPAAAQYG
                     RPPMSTMPKGGAPDILKEVKIEQRLGSQVPLDATFRDESGRAVRLGEYFEDGKPVVLS
                     LVYYECPMLCNQILNGLVGALDGVSFTPGEEFRVVTVSFDPRETPEMAARKKETYLRR
                     YKREGAGDGWHFLTGEKAEIDRLAESAGFGYAWDERSNQFAHASAIMVTTPEGRLSHY
                     FYGIDYDPRALRLSLVEASDNKIGSPVDALLLYCYHYDPTTGKYGPVIMNILRVAGVL
                     TVAGVVALVLVLRKRGAGGRGERWDDEINVGGAA"
     gene            1460..2611
                     /gene="coxB"
                     /locus_tag="VD968_00625"
     CDS             1460..2611
                     /gene="coxB"
                     /locus_tag="VD968_00625"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HYE12930.1"
                     /translation="MSLTDQMLLAQVSVPFAPEQASTFAPEVDALYAYLWAITIFFST
                     LITAAIIFFAIKYRRRQPGELPRPRAGSLVLELTWTVIPLLIAMTIFVWATSLYFKVY
                     RAPKEAMEIYVVGKQWMWKFQHATGQREINELHVPVGSRVKLTMTTEDVIHSLYVPAF
                     RVKMDVVPGRYTQTWFEATKAGRYYLFCAEYCGTNHSGMGGFVEVMEPAAYQQWLAGG
                     TGSESAAAQGQKLFQDRGCASCHNVDPQGQQGRGPTLYGLFGRQQEIQGGQSVTVNED
                     YVRESILNPQAKLAAGFQPIMPTYAGQLSEEQVLQLIAYIRSLGAQEEQRQGGAGAGS
                     PVRNEGQQTMGGGVAPNAQRMNPVGPTQPAPRQSGPANSGSGGLTPPQR"
     gene            2659..>4098
                     /locus_tag="VD968_00630"
     CDS             2659..>4098
                     /locus_tag="VD968_00630"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HYE12931.1"
                     /translation="MSTQAIPESPRQEWRSRFPTVNYLNADYGIKSWLLTLDHKRIAL
                     LYLLSISFFFAVGGAYAAAIRLELLTPQGDLMQSHTYNKVFTHHGIMMVFFFLIPSIP
                     ATLGNFLIPMMIGAKDLAFPRLNLLSWYIYMVGGIVTFAALLNGGVDVGWTFYTPYSS
                     SFSNTYVTLAGLGIFINGFSSILTGLNFIVTIHTMRAPGMTWFRLPLFIWSHYATSLI
                     FILGTPVIAITILLVAVERLARIGIFDPRLGGDPVLFQHLFWFYSHPAVYIMILPAMG
                     VVSELVATFTRKNIFGYSFVAFSSIAIAVFGFLVWGHHMFTSSQSVYAGMIFSLISFV
                     VAIPSAVKVFNWTATMYKGSISYDTPMLYAFAFIGLFVIGGMTGLFLAALGLDIHVHD
                     TYFVVAHFHYIMVGGAVMGYLGGLHYWWPKMTGRMYPEGWGRFAALVIFVGFNLTFFP
                     QFLLGYLGMPRRYHAYPTDAPLWQVLHVMS"
BASE COUNT          699 a         1400 c         1303 g          696 t
ORIGIN      
        1 catctgcggg gcgatgtggc tgatgttcaa gtaccttcag gggcgcgagg aggcggagga
       61 gctcacgccc tcgccgctcg cgcgccagcg cgaggagcgc ctgccgcccg agccgcgcct
      121 acagctcgcg cccggcttca aggcgaagac ctcggacggc cgcgaggttg acctcaccta
      181 cgacatacag gcgccgaccg agcgcgcccc gcagccgcag tccgagtact gggttgtcct
      241 ggccgactgg cagcaccaac tgcacacata cggctgggcc gacgagaagg ccggcaccgt
      301 ccgcataccc gttgacgagg cgattaagcg ctacgccgcg caacagcagt cgaagcagca
      361 gcaacagcag ccgggcggcg cgcaggggcg gccgactacc ggcgcgcagc agcaggccgt
      421 ccccggcgag tcgcagccct cgcagtcaag ctcaggccac caagccgagc cgaggcacca
      481 atgacatacg gaagttataa gtcgggagtc ataagctgga agaccaaggg cgcgcagcgt
      541 gtcttcgccc gcctgccact ttcagccttc tgcctccttt ggctcgcggc tccggccgcg
      601 gcgcagtacg ggcgcccgcc gatgagcacg atgccgaagg gcggcgcgcc ggacatactg
      661 aaggaagtaa agatagagca gcggctgggg agccaggtgc ctttagacgc cacgttccgc
      721 gacgagtcgg gccgcgccgt ccggctcggc gagtacttcg aggacggcaa gcccgtagtg
      781 ctctcgctcg tctattacga gtgcccgatg ctttgcaacc agattctgaa cgggctcgtc
      841 ggcgctttag acggcgtgag cttcacgccg ggcgaggagt tccgcgtcgt caccgtcagc
      901 ttcgacccgc gcgagacgcc cgagatggcc gcgaggaaga aggagaccta cctgcgccgc
      961 tacaagcgcg agggcgccgg ggacggctgg cacttcctca cgggcgagaa ggccgagatc
     1021 gaccgcctcg cggaatcggc gggcttcggc tacgcctggg acgagcgctc gaaccagttc
     1081 gcgcacgcct cggccattat ggtcacgacg cccgaagggc gcctgtcgca ctacttctac
     1141 ggcattgact acgacccgcg cgctctcagg ctgtcgctcg tcgaggccag cgacaacaag
     1201 ataggcagcc ccgtggacgc gctcctgctc tactgctacc actacgaccc gaccacgggg
     1261 aaatacggcc cggtcatcat gaacatactg cgcgtggcgg gcgtgctgac ggtggcaggc
     1321 gtcgtcgcgc tcgtgctcgt gctccgcaag cgcggcgcgg gcgggcgggg cgagcgctgg
     1381 gacgacgaga taaacgtggg cggggccgcc tgagcgggcc ggcccggcgt gattatccct
     1441 cgggggaggg gagcttcgag tgagcctgac tgaccagatg cttctagcgc aagtgagcgt
     1501 gccgttcgcg cccgagcagg cgtcaacgtt cgcgcccgag gtggacgccc tctacgccta
     1561 cctttgggcg ataacgatct tcttctcgac gctgataacg gccgcaataa tcttcttcgc
     1621 catcaagtac cgccgccgcc agcccggcga gctgccccgc ccccgcgccg gctcgctcgt
     1681 gctggagctg acctggaccg tcataccgct gctgatagcg atgaccatct tcgtctgggc
     1741 cacatcgctc tacttcaagg tctatcgcgc gccgaaggag gcgatggaga tttacgtcgt
     1801 cggcaagcag tggatgtgga agttccagca cgcgacgggg cagcgcgaga taaacgagct
     1861 gcacgtcccc gtaggctcgc gcgtcaagct cacgatgacg accgaggacg tcatacacag
     1921 cctctacgtg ccggccttcc gcgtgaagat ggacgtggtg ccgggccgct acacgcagac
     1981 ctggttcgag gcgacgaagg ccggccgcta ctacctattc tgcgccgagt actgcggcac
     2041 gaatcactcg gggatgggcg gcttcgtcga ggtgatggag cctgcggctt accaacagtg
     2101 gctcgcgggc gggaccgggt cggagtcggc cgcggcgcag gggcagaagc tcttccagga
     2161 tcgcggctgc gcctcgtgcc acaacgttga cccgcagggg cagcaggggc gcggccccac
     2221 gctctacggg ctcttcggcc gccagcagga gatacagggc gggcagtccg tgacggtcaa
     2281 cgaggactac gtgcgcgagt caatactcaa cccgcaggcg aagctcgccg ccggcttcca
     2341 gcccatcatg ccgacctacg cgggccagct ctccgaggag caggtcttgc agctcatcgc
     2401 ctacatacgc tcgctcggcg cgcaagagga gcagcggcag ggcggcgccg gcgccggttc
     2461 gcccgtgcgc aacgaggggc agcagacgat gggcggcggc gtggcgccga acgcgcagcg
     2521 catgaacccc gtcggcccga cgcagcccgc gccgcgccag agcgggccgg ccaactcggg
     2581 ctcgggcggg ctcaccccgc cgcagcgtta gcggaggatt aagacggcga cggcggcagt
     2641 ttcagggacc aggcacttat gagcacacaa gcgataccgg agagcccgag gcaggagtgg
     2701 cgcagccgct tcccgacggt caactacctt aacgccgact acggcataaa gtcgtggctg
     2761 ctgacgctcg accacaagcg catcgcgctc ctctacctgc tctccatctc cttcttcttc
     2821 gcggtgggcg gggcgtacgc ggcggccata cgcctcgagc tgctgacccc gcagggcgac
     2881 ctgatgcagt cgcacaccta caacaaggtg ttcacgcacc acgggatcat gatggtcttc
     2941 tttttcctga tcccgtccat cccggcgacg ctcggcaact tcctcatccc gatgatgata
     3001 ggcgcgaaag acctggcctt cccgcgcctc aacctgctca gctggtacat atacatggtg
     3061 ggcggcatag tcaccttcgc ggcgctcctg aacggcggcg ttgacgtggg ctggacgttc
     3121 tacacgccct actcgtcctc gttctcgaac acctacgtca cgctcgccgg cctcggcatc
     3181 ttcatcaacg gtttctcgtc catacttacg ggcctgaact tcatcgtcac catacacacg
     3241 atgcgggcgc cggggatgac ctggttccgg ctcccgctct tcatctggtc gcactacgcc
     3301 acgagcttga tattcatact cggcacgccc gtcatagcca tcaccattct gctcgtggcg
     3361 gtcgagcgcc tcgcgcgcat aggcatattc gacccgcgcc tgggcggcga ccccgtgctc
     3421 ttccagcacc tcttctggtt ctactcgcac ccggccgtct atatcatgat actgcccgcg
     3481 atgggcgtcg tctccgagct ggtggcgacg ttcacgcgca agaacatctt cggctactcg
     3541 ttcgtggcct tctcctcgat agccatcgcg gtgttcggct tcctcgtctg gggccaccac
     3601 atgttcacgt cgagccagtc ggtttacgcc gggatgatct tctcgctcat ctcgttcgtg
     3661 gtcgccatac ccagcgcggt gaaggtcttc aactggacgg cgacgatgta caagggctct
     3721 atctcctacg acacgccgat gctctacgcc ttcgccttca tagggctgtt cgtcatcggc
     3781 ggcatgacgg ggctcttcct ggcggcgctc ggcctcgaca tccacgtcca cgacacctac
     3841 ttcgtcgtcg cgcacttcca ctacatcatg gtcggcggcg ccgtcatggg ctacctcggc
     3901 gggctgcact actggtggcc gaagatgacg gggcgcatgt acccggaggg gtgggggcgc
     3961 ttcgccgcgc tcgtcatctt cgtcggcttc aacctgacct tcttcccgca gttcctcctc
     4021 ggctacctcg gcatgccgcg ccgctaccac gcgtacccga ccgacgcccc gctctggcag
     4081 gtgctgcacg tgatgagc
//
LOCUS       DASPKR010000026         8471 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1685044, whole genome shotgun sequence.
ACCESSION   DASPKR010000026 DASPKR010000000
VERSION     DASPKR010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8471)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8471
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1685044"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(169..1392)
                     /locus_tag="VD968_00635"
     CDS             complement(169..1392)
                     /locus_tag="VD968_00635"
                     /inference="COORDINATES: protein motif:HMM:NF017984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0036297 - interstrand cross-link repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crosslink repair DNA glycosylase YcaQ family
                     protein"
                     /protein_id="HYE12932.1"
                     /translation="MPTTELSNSEARAVMLAAQGLLRRPRDAARKADVLAAIRRMGAL
                     QIDTIHVAARSPYLVLWSRLGDYEPRWLDELLAEGKLFEYWSHEACFLPAEDYPLYRH
                     RMLDPHSMGWKYSHEWISRHRAEIDSVLTYIREHGPARSSDFARTDGRRGGWWEWKPE
                     KRALEMLFTAGELMIARRQNFQRIYDLRERVLPLWDDSRLPPKEEARRALVLKAVRAL
                     GVAKAGWVSDYFRTNKSETAAAVVSMAEEGGLLRVRVAGWGEDAFAHPENRELIEQAS
                     SRRLRPARTTLLSPFDPLVWDRARAREMFGFDYRLECYTPAPKRRYGYFTLPILDRGR
                     LVGRLDPKAHRAEGVFEVKSLHLEPGVIVSDELAGRLARAIRECAAWHKTPEVKLGRT
                     NPPKLASLLRRALSA"
     gene            1628..1710
                     /locus_tag="VD968_00640"
     tRNA            1628..1710
                     /locus_tag="VD968_00640"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1661..1663,aa:Ser,seq:cga)
     gene            1725..1798
                     /locus_tag="VD968_00645"
     tRNA            1725..1798
                     /locus_tag="VD968_00645"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1759..1761,aa:Ala,seq:ggc)
     gene            1805..1876
                     /locus_tag="VD968_00650"
     tRNA            1805..1876
                     /locus_tag="VD968_00650"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1837..1839,aa:Gly,seq:gcc)
     gene            1924..1997
                     /locus_tag="VD968_00655"
     tRNA            1924..1997
                     /locus_tag="VD968_00655"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1958..1960,aa:Arg,seq:gcg)
     gene            2007..2077
                     /locus_tag="VD968_00660"
     tRNA            2007..2077
                     /locus_tag="VD968_00660"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2039..2041,aa:Gln,seq:ctg)
     gene            2241..2645
                     /locus_tag="VD968_00665"
     CDS             2241..2645
                     /locus_tag="VD968_00665"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016279 - protein-lysine
                     N-methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein"
                     /protein_id="HYE12933.1"
                     /translation="MSKGGACYEVRRTATGLGLFATKLIPKGKRIIEYTGPLITNEEV
                     ERRRRGKYFFGVDDKYSIDGSPRSNTARYINHSCLPNAEAIISSRRRIWIWSRRTIKP
                     GEEITFDYGKEYFDDHIRPKGCKCPKCSPARK"
     gene            2659..3861
                     /locus_tag="VD968_00670"
     CDS             2659..3861
                     /locus_tag="VD968_00670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12934.1"
                     /translation="MKRRRLLLASALCAAACLSCAHAAVAQALKLKPVRVRLARGKSF
                     DLNLPEGFGVSVAAQGLRRARFMAESPDGRVFLTDMHGLADNSRGAVYVLEDFDAAGK
                     SFGKITPYLTGLRNPNSLAFYTDPSGIHWLYLALTDRLVRYRYEPGDAAPRGEPEVLA
                     TFPDYGLSYKYGGWHLTRTVAVGEGGRIYVSVGSSCNACVEREDVRATVIEMNADGSG
                     RRFYARGLRNAVGLVWSGGRLFATNMAADHLGDHRPTDTMHAVSDGANYGWPYCYQSG
                     RRRLADAEHNPRGRKLDCRKVPEAYAAFDAHSSPLGLARFGRESAAEIRDSFLVALHG
                     STKKSLGRGYRVARVRGEGAAPEDFITGFLSAGKIHGRPAGLLPFGADAFLLTDDHAG
                     VVYYVYKK"
     gene            complement(3877..5034)
                     /locus_tag="VD968_00675"
     CDS             complement(3877..5034)
                     /locus_tag="VD968_00675"
                     /inference="COORDINATES: protein motif:HMM:NF044863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12935.1"
                     /translation="MTAPAYPAARAVAATVEAHFGRRAESARQRGRDGSLAPEPDART
                     VEAIIEAAFWASLRREEGFSPKISLALLPPEMAAQPLLFERRLALAPAALAKLAPAVE
                     RPGIHLGVWRDDDAEGGGLHVWGATRTLPRLCFVLEVIEPGLLVVKHPRSRDPGKFAN
                     VIVLKGDEVKVIDEAGASLPDCPSLLTSLLGLGAPPGISFDSVDVLVRLAVSMRAHGR
                     GGSLLVVPQGSEGWRESIVRPIPYAVTPPFGELAELMRRDPSERAEQVWQEALIDAVE
                     AVAGLTAVDGAAVISDAYDVLAFGAKISRRRGGAQVERISVTEPVVGGAAWRAHPSEL
                     GGTRHLSAAQFVLDQQDAVALVASQDGRFTVFAWSPCEAMVHAHRVETLLL"
     gene            5264..6457
                     /locus_tag="VD968_00680"
     CDS             5264..6457
                     /locus_tag="VD968_00680"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE12936.1"
                     /translation="MKRTELRFFAAAAAALALCAPLALGQSGATRPRRVNPVQPAPST
                     TDNAASTSRTPSVGARPQGTTASAYALLKQGQYEAALREAEQITAADAKNAEAWKIAG
                     FAQRNLKRYADAAESLQRAYDLRREAKVEDPEAEDALAEAYALSESYEKALPLLVAST
                     ARKGAPPRAGLLYLRGLAEVKTGRAADAERSFAAALRADPKDKGSLYYLGQMAFQKGD
                     YTTAVNMFNRATLVDPKLVQAWQLLTHAYLRRAQGATGPKADADYLAAVRASESLLRA
                     QDSEENAALHGQALIFAKQYAPAAAALERAAAGDSASGATLYLLGFAHSRAKNFPKAI
                     GALERAAAKTPDNAEIFRELGYVYEASKQYSQALAAYERGQQLAPTDAYFKESAERVR
                     PFAKQ"
     gene            6577..7083
                     /locus_tag="VD968_00685"
     CDS             6577..7083
                     /locus_tag="VD968_00685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12937.1"
                     /translation="MRTKNYSRARGALAGLGLVLVLALLAQPARAASWKGLEPFVSKR
                     ADVERVLGAPASDRVAENGTLHFNVSGGTVTVFFVTPKFVAAKKLSPSLEGTVLQIVL
                     QHERATDTPESLNLVQNSAFERQAKGPTEVYTNAKDGVIYTFIDSRLRTTRYSYSMEQ
                     LTRIQRGK"
     gene            7150..8373
                     /locus_tag="VD968_00690"
     CDS             7150..8373
                     /locus_tag="VD968_00690"
                     /inference="COORDINATES: protein motif:HMM:NF020933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair nuclease NurA"
                     /protein_id="HYE12938.1"
                     /translation="MLYRAHLIAALEERHEEFARFERALRDEVGGAAAALRSLSGKTA
                     DEVRRSVTSSQGEPRVTLPSDELDSAGAVVLPFGEAWRSHEEARRWALRVLENRVTFA
                     ADGSQIFPGREATVPVAAVQIACFENPHAPSGDYTKESFVSVLTPAELLGDGRAYESP
                     DQLVGVRRFELEAEAVCAFLERRRGWRARGERMPLAFFDNTLVISSRRKDTEVLFSKR
                     YTAALSELLRLSRECEVPVVGYVDNSYAPDIRDLLEALHAGARTAGGLFDAKILRALS
                     EGAPPLLRSWGDRTIFWHCRRPNLAASFYDEAGEPLVGFVYLQTTADCNPARLDIPAW
                     AQASGLVPEVADVVRAECVVGNGYPYAIETADQAAVMSANDRSEFLHLVEEFAARNGL
                     EFAVARKAASKGRRR"
BASE COUNT         1437 a         2937 c         2804 g         1293 t
ORIGIN      
        1 ggcgggaggc catccccgga tttgaaaaaa cttctctcgg cctttgagtt cacctggacc
       61 gaaaaaagat gaagagggcg caccgcctca agcggcctga caagaggttt gttcgagcac
      121 gcttccggat gtgaggccgg ccttgaaccg agccgggatg cgctcgggtc aggcagaaag
      181 ggctcgcctg aggagggaag ccaacttggg agggttcgtg cggcctaatt tcacctccgg
      241 ggtcttgtgc cacgcggcgc actcccgaat cgcccgcgcg agacgcccgg ccaactcgtc
      301 gctcacgatg acgccgggct caaggtgcag cgacttgacc tcgaagacgc cctccgcccg
      361 gtgcgcttta gggtcgaggc ggcctaccag cctgccccgg tcgagaatcg gcagcgtgaa
      421 gtagccgtag cgccgcttgg gagcgggcgt gtagcactca agacggtagt cgaagccgaa
      481 catctcgcgc gcccgcgccc tatcccacac gagcgggtcg aacggcgaga ggagagtggt
      541 gcgcgcgggc cgtagcctgc gggacgacgc ctgttcgata agctcacggt tctccgggtg
      601 cgcgaaggcg tcttcgcccc agcccgcgac cctgacgcgg agcagcccac cctcttcggc
      661 catggagacg acggcggcgg ccgtctcact tttgttcgtc cgaaagtaat cgctcaccca
      721 acccgctttg gcgacgccga gcgcgcgaac cgctttgagg acgagcgcgc gccgcgcctc
      781 ttctttcgga gggagccgcg agtcgtccca caacgggagg actcgctccc gcaggtcgta
      841 gatgcgttgg aagttttggc ggcgggcgat catcaactcg cccgccgtga agagcatctc
      901 cagcgcgcgc ttctcgggct tccactccca ccagccgcca cgccgtccgt ccgtgcgcgc
      961 gaagtcggac gagcgcgcgg ggccgtgctc gcgtatgtag gtcagcacgc tgtcaatctc
     1021 cgcgcggtgc ctgctgatcc attcgtgcga atacttccag cccatactgt gagggtcgag
     1081 catacggtgc ctgtagaggg gatagtcttc cgcggggagg aagcaggctt cgtgcgacca
     1141 gtattcaaag agcttgcctt ccgctaacag ttcgtcgagc cagcgcggct cgtagtcccc
     1201 gagccggctc caaaggacga ggtaggggct ccgcgcggcg acgtggatcg tgtctatctg
     1261 caaagcgccc atgcggcgga tagccgccag cacgtccgcc ttcctcgcgg cgtcgcgcgg
     1321 ccgccggagc aggccctggg cggcgagcat gacggcacgc gcctcgctgt tcgatagttc
     1381 ggtcgtcggc attcgagatc gggcggcgac aatacggacg ggcctcggcc ccgcggcagc
     1441 cgcgtcgaaa gcttttagca gcctccgctc agtcggcaca agcgcgaaat aattggcgcg
     1501 tgcggccgtc ggcacccgtc ggcttacggc gcgcggcagg catctgaagc ccgccttacc
     1561 gcatcaaaaa ccgattcgcg cgccacaagg cgccgggcgt gtatttttga caaccgaatc
     1621 ggctcgtgga gagttagtct aattggtaag gcaccagtct cgaaaactgg cgaccggaag
     1681 gtcttggggg ttcgagtccc tcactctccg ttctttctcg gttcggggcc gtagctcagt
     1741 ttggcagagc gcttgaatgg cattcaagag gtcagcggtt cgaccccgct cggctccatc
     1801 ccgcgcggga gtaactcagc ggtagagtgc gaccttgcca aggtcgaagt cgcgggttca
     1861 aatcccgtct cccgcttccg tcaggcggtg atgagaagca cgctgctcct catcatttct
     1921 cacgggcccg tagctcagcg gattagagcg cgaccctgcg gaggtcgagg ccgcacgttc
     1981 gagtcgtgcc gggctcattg tagtgttccg ggatcgtcta atggcaggac atctgactct
     2041 ggatcagaga attggggttc gagtccctgt cccggagttt cgttcgcgag cgcgtagctc
     2101 agtcggtaga gctcaagttc cacggacgtt aggcgcgaaa actattaagc tcgcgcgcgc
     2161 ccgcggcatc gacatgctcg acggcacgcc cgccgcccgg cggttaactt ccccgcggct
     2221 taccggctat acttcggcgc atgagcaagg ggggagcctg ttacgaggtc aggcgcacgg
     2281 ctacggggct ggggctgttc gcgacgaaac tcataccgaa gggcaagcgc ataatcgagt
     2341 acacaggccc cctcatcacc aacgaggagg tcgagcggcg caggcgcggc aaatacttct
     2401 tcggcgttga cgacaagtac agcatagacg gcagcccgcg tagcaacacg gcgcgctaca
     2461 tcaaccactc ctgcctcccc aacgccgagg ccatcatctc ctcccgccgc cgcatctgga
     2521 tttggtctcg caggacgatt aagcccggcg aggagatcac cttcgactac ggcaaggaat
     2581 acttcgacga ccacatcagg ccgaagggct gcaaatgccc gaagtgctcg cccgcgcgga
     2641 agtagattcg ctccccctat gaaaagaaga aggctactgt tggcctccgc gctctgcgcc
     2701 gcggcctgtt tgtcgtgcgc ccacgcggct gtggcgcagg cgctcaaact caagcccgtc
     2761 cgcgttaggc tcgcgcgcgg caagtctttc gacctgaatc tgcccgaggg cttcggggtg
     2821 agcgtcgccg cgcagggcct ccggcgcgcg cgcttcatgg ctgagagccc cgacgggcgc
     2881 gtattcctga ccgacatgca cggcctcgcc gacaacagcc gcggcgccgt ctatgtgctc
     2941 gaagacttcg acgccgccgg caagtcgttc gggaaaatca cgccctacct gaccggcctt
     3001 cgcaacccga acagcctcgc cttctacaca gacccgtcgg gcattcactg gctctacctc
     3061 gcgctcacag accgtctcgt gcgctacagg tacgagccgg gcgacgcggc cccgcgcggc
     3121 gagcccgagg tgctcgccac cttccccgac tacggcctga gctacaagta cggcggctgg
     3181 caccttacgc gaacggtcgc ggtgggcgaa ggcgggcgaa tctacgtctc tgtcggcagc
     3241 agttgtaacg cctgcgtcga gcgcgaggac gtgcgcgcga ccgtcatcga gatgaacgct
     3301 gacgggagcg ggcgtaggtt ctacgcgcgg gggcttcgca acgccgtggg gctcgtctgg
     3361 tcgggcggcc gtctgttcgc gacgaacatg gcggccgacc acctcggcga ccacaggccc
     3421 accgacacga tgcacgccgt ctcggacggg gcgaactacg gctggcccta ctgctaccag
     3481 tccggccgcc gccgcctcgc cgacgccgag cacaaccctc gcggccgcaa gctggactgc
     3541 cgcaaagtcc ccgaggctta cgccgccttc gacgcgcaca gctcaccgct cgggctcgcg
     3601 cgcttcggcc gggagagcgc ggccgagatt cgcgactcgt tcctcgtcgc gctccacggc
     3661 tcgacgaaga agagcctcgg gcgcggctac cgcgtggcgc gcgtgcgcgg cgagggcgcc
     3721 gcccccgaag acttcatcac agggttcctg agcgccggaa aaatccacgg tcgcccggcc
     3781 ggcctcctgc ccttcggcgc cgacgccttc ctgctcacgg acgaccacgc gggcgtcgtc
     3841 tattacgtct ataaaaagta ggccggccgc gcgagtttag agcaggagag tctcgacgcg
     3901 gtgcgcgtga accatcgcct cgcagggcga ccacgcgaag accgtgaagc ggccgtcctg
     3961 cgaggcgacg agcgcgacgg cgtcctgctg atccagcacg aactgcgcgg ccgacaggtg
     4021 ccttgtcccg ccaagctccg aagggtgcgc gcgccacgcc gccccgccga cgacgggctc
     4081 ggtgactgaa atgcgctcga cctgcgcgcc gcccctcctg cggcttatct tggcgccgaa
     4141 ggcgagcacg tcgtaggcgt cgcttatgac ggcggcgccg tccacggccg tcagccccgc
     4201 gacggcctcg acggcgtcaa tcagggcctc ctgccacacc tgctccgccc tctccgaagg
     4261 gtcgcgcctc atcaactccg cgagctcgcc gaacgggggc gtgactgcgt aagggatggg
     4321 gcgcacgatt gactcgcgcc agccttcgga gccttgaggg acgacgagga gcgagccgcc
     4381 gcggccgtgc gcgcgcatcg agacggcgag gcgcacgagc acgtcaaccg agtcgaagct
     4441 gatgccggga ggcgcgccga ggccgaggag cgaagtcagc agcgaagggc agtcgggcag
     4501 gctcgccccg gcctcgtcaa tcaccttcac ctcgtcgccc ttgagcacaa tgacgttggc
     4561 gaacttgcca gggtcgcggc tgcgcgggtg cttgacgacg agcaggcccg gctcgatcac
     4621 ttcgagcacg aaacagagcc gcggcagcgt gcgcgtcgcg ccccagacgt gcaggccgcc
     4681 gccctctgcg tcgtcgtcgc gccagacgcc gaggtgtatg cccggcctct cgacggcggg
     4741 cgcgagcttg gcgagcgcgg cgggcgcgag cgcaagcctg cgctcgaaga ggagcggctg
     4801 cgcggccatc tcgggcggga gcagggcgag cgagattttg ggcgagaagc cctcctcgcg
     4861 gcggaggctc gcccagaagg cggcttcgat tatcgcctcg accgtccgcg cgtcgggctc
     4921 gggcgcgagc gatccgtcgc ggccgcgctg gcgcgccgac tccgcccgcc ggccgaagtg
     4981 cgcctcgacg gtcgccgcca cggcccgcgc cgccgggtat gccggcgccg tcataagctc
     5041 tcgattcctg tcatcttaag ttccgctcca gccaagagaa taaccgccgc tgccttcatt
     5101 ctaagtttac ggcggcgccg tcacaaaccg cggcccgccg gccttgcggg cgaaccaaaa
     5161 gggcggcggc gcgcatccga agtgcggccc gctctcccgc gcacaaagtc cgccgcccga
     5221 agcgcttgaa ataacgcgcc cggctatgaa agactcctga accatgaaga gaacagagct
     5281 gagatttttc gccgccgcgg cagccgccct cgccctctgc gcgcccctcg cgctcgggca
     5341 gtcgggcgcg acccggcccc ggcgcgtcaa ccccgtgcag cccgcgcctt cgacgactga
     5401 caacgccgcg tccacgtcgc gcaccccttc cgtaggcgcg cggccgcagg ggacgaccgc
     5461 gagcgcctac gcgctcctaa agcagggcca gtacgaggcc gcgctacgcg aggcagagca
     5521 gataacggcg gccgacgcga agaacgccga ggcgtggaag atagccggct tcgcgcagcg
     5581 caacctgaag cgctacgccg acgcggccga gagcctacag cgcgcctacg acctgcgccg
     5641 cgaggcgaag gtcgaagacc cggaggccga ggacgccctg gccgaagcct acgcgctctc
     5701 ggagagctac gagaaggccc tgccgctgct cgtcgcctcg actgcccgca agggcgcgcc
     5761 cccgcgcgcg gggcttctct acctgcgcgg cctcgccgaa gtcaagaccg gcagggccgc
     5821 cgacgccgag cgctccttcg cggcggcgct gcgcgcagac ccgaaggaca agggctcgct
     5881 ctactacctc ggccagatgg ccttccagaa gggcgactac acgacggccg tcaacatgtt
     5941 caaccgcgcc acgctcgttg acccgaagct tgtgcaggca tggcagctcc tgacgcacgc
     6001 ctacctgcgc cgcgcgcagg gcgccacggg gccgaaggcc gacgccgact acctcgccgc
     6061 cgtccgcgca agcgagtcgc ttctgcgcgc gcaggacagc gaggagaacg cggcgctgca
     6121 cgggcaggcc ctcatcttcg ccaaacagta cgcgcccgcg gccgccgcgc tcgagcgcgc
     6181 cgccgcgggc gactctgcga gcggcgccac gctctacctc ctcggcttcg cgcactcgcg
     6241 cgccaaaaac ttcccgaagg ccatcggcgc cttagagcgc gcggccgcca agacgccgga
     6301 caacgccgaa attttccgcg agctgggcta cgtttacgag gcgtcgaagc aatactcgca
     6361 ggcgctcgcc gcgtacgagc gcggccagca gctcgcgccg acggacgcct acttcaagga
     6421 gtcggccgag cgcgtccgcc ccttcgccaa acagtagtcc caagctctaa gcccaagacg
     6481 ggagcaccgg cactgactca gtctgacagt gccggcgctc ccgttttcaa acttaaagct
     6541 tgaaacttgc gactattaag agctagcatc cgtcgtatga gaaccaagaa ttattcgcgg
     6601 gcgcgggggg cgctcgccgg cctcggtctc gttctcgtgc tggcgctgct cgcgcagcca
     6661 gcgcgggccg cgagctggaa ggggttggag ccgttcgtgt cgaagcgcgc ggacgttgag
     6721 cgcgtgctgg gcgcgccggc gtcggacagg gtggctgaga acggcacgct ccacttcaac
     6781 gtgtcgggcg gcacggtcac ggtcttcttc gtcacgccga agttcgtcgc ggcgaagaag
     6841 ctctcgccct cgctcgaagg cacggtgctc cagatcgtat tgcagcacga gcgcgcgacc
     6901 gacacgccgg agtcgctgaa cctcgtccag aactcggcct tcgagcggca ggccaagggc
     6961 ccgaccgagg tctatacgaa cgcgaaggac ggcgtcatct acaccttcat tgacagccgc
     7021 ctgcgaacca cccgctactc ctactcgatg gagcagctca cgcggataca gagggggaag
     7081 tgagccgggc gcgggttgcg ggctgatgag aagcacgctg tctgtcaatc cgcagtcggc
     7141 aatcccgtga tgctgtaccg cgcgcacctg atcgccgcgc tcgaagagcg gcacgaggag
     7201 ttcgcacgct tcgagcgcgc gctgcgcgac gaggtgggcg gggccgccgc cgcgctgcgc
     7261 tcgctctcgg gcaagacagc cgacgaagta aggcgctcgg tcacttcgtc gcagggcgag
     7321 ccgcgcgtca cgctcccctc tgacgagctc gattcggcgg gcgcggtcgt cctccccttc
     7381 ggcgaagcat ggcgctcgca cgaggaggcg cgtcgctggg cccttcgagt gctcgagaac
     7441 cgcgttacgt tcgccgcgga cgggagccag atttttccgg gccgcgaggc gacagtcccg
     7501 gtcgccgccg tccagattgc ctgcttcgag aaccctcacg cgccatccgg cgactacacg
     7561 aaagagagct tcgtgagcgt cctgacgccc gcggagcttc tcggcgacgg gcgcgcttac
     7621 gagagccccg accagctcgt cggcgtgcgc cgcttcgagc tggaagcgga ggccgtctgc
     7681 gccttcctcg aaaggcggag gggctggcgc gcgcgcggcg agcgaatgcc cctggccttc
     7741 ttcgacaaca cgctcgtcat ctcgtcccgc cgaaaggaca cggaggtgct cttctcgaag
     7801 cgctacacgg cggcgctctc ggagcttctg cgcctgtcgc gcgagtgcga agtccccgtc
     7861 gtcggctacg ttgacaactc ctacgcgccc gacatacgcg acctgctaga agccctgcac
     7921 gcgggggcgc gcacggccgg cggcctcttc gacgcgaaga ttctgcgcgc gctctctgag
     7981 ggcgccccgc cgcttttgcg ctcgtggggc gaccgcacca tcttctggca ctgccggcgc
     8041 ccgaacctcg ccgcgagctt ctacgacgag gcgggcgagc cgctcgtcgg cttcgtctat
     8101 ctgcaaacca ccgcggactg taaccccgcg cgcctcgaca tcccggcgtg ggcacaggcg
     8161 tcggggctcg tccccgaagt ggcggacgtt gtgcgcgccg agtgcgtcgt gggcaacggc
     8221 tacccttacg cgatagagac ggccgaccag gcggccgtca tgtcggcgaa cgaccgcagc
     8281 gagttcctgc atctagtgga agagttcgcc gcgcgaaacg ggctcgagtt cgccgtcgcg
     8341 cgcaaggccg cgagcaaggg gcgacgccgt tgagccgggg gcagaaatct gtcatcatct
     8401 ccccacggcg tgacgtaaga actccccgga gaagcgcatg agcagcagca ccgtcgagag
     8461 cggcggactt g
//
LOCUS       DASPKR010000027         5721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1685159, whole genome shotgun sequence.
ACCESSION   DASPKR010000027 DASPKR010000000
VERSION     DASPKR010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5721)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5721
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1685159"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..574
                     /locus_tag="VD968_00695"
     CDS             <1..574
                     /locus_tag="VD968_00695"
                     /inference="COORDINATES: protein motif:HMM:NF027968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-glucosidase C-terminal domain-containing
                     protein"
                     /protein_id="HYE12939.1"
                     /translation="RIELLHSLLFSLPGSPFLYYGDEIGMGDNIYLGDRDGVRTPMQW
                     SSDRNAGFSKADFEKLYFPVISNPVYGYNSVNVESQTRYDSSLLHWMRQMILLRKAHH
                     VFGRGTMTFLKPENRKIFAFTREHDGETVLCVFNLSQFAQPVELELSGFEGRSPVEML
                     GKTRFPAVTAAPYQLALAPWGFYWFLLEEK"
     gene            613..1053
                     /locus_tag="VD968_00700"
     CDS             613..1053
                     /locus_tag="VD968_00700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12940.1"
                     /translation="MLKALGSGLVGACALTLIHETARRLAPEVAPRMDVLGMRAIAKT
                     MRAVDAEPPAPLHEVALAGDIVSNSLYYSLVAVGDREDALRNGALLGLAAGLGAVFLP
                     KPLGLGSQPTERTPATQLMTVAWYLAGGLAAAAAYKALAPEDED"
     gene            1080..2318
                     /locus_tag="VD968_00705"
     CDS             1080..2318
                     /locus_tag="VD968_00705"
                     /inference="COORDINATES: protein motif:HMM:NF039204.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5715 family protein"
                     /protein_id="HYE12941.1"
                     /translation="MRARGLVPAAALLLAVLSSLVAAQGCRRREKAAASIPAPESAPP
                     AMVDPWREAALKVEADRGEPTGRGAPGVEVPPQLKHSEDRRLFLAVQIAEWRRGARAR
                     PHDFAELASLIRGGALVELPALGKDFILYGVGYSATDEPFTHYDKATGRGVTIYGGEE
                     ELKQERARIADELKQSGEELKALRKALAETPKAERELRKALQGEAAEKERAAAALKAR
                     QKLLDDFYNDGESRRLIAAERETLAALAADFGGRAYNLDDAASRKAMKVRMLSFLRPE
                     ALKILEEVAAGYAEKFERPLPVTSLVRPDEYQRQLRETNPNATLAEPPPHTTGLAFDI
                     FYKHMTAAEQNFLMAELARMRDEGRVEALRELRDHFHVFAFPSGRPDDELIRRVLEGD
                     TKKKKKAEPKAPARKPARKR"
     gene            complement(2336..3538)
                     /locus_tag="VD968_00710"
     CDS             complement(2336..3538)
                     /locus_tag="VD968_00710"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HYE12942.1"
                     /translation="MRTLARKESRSENPLEHNLRPHFEALARFDSTRALESSALYARL
                     RPEIERVLGSVETGEHAPPAAAARKSVRATAWNIERGAKLGGIAEVLGSHPVLSASDV
                     LLLTELDYGMARSRNRHVARELAGALGMSYAFAPCYIALSKGSGLESEVEGENEQSLH
                     GNAVLSRWPVRAARSVALPNGKDKMRGREKRLGSQRAVVCDVEHPSGAFRAVSLHLDA
                     HSSQRHRARQMGVVLDFVERLEPRLPVLVGGDWNTTTYDSSRAAYTILGFFRRVAMGP
                     GYFIRNHYLRPESWFDRHVFRELERRGYEFRTLNEPGAGTLFYDVKDLAAHRNLAEWV
                     PKWCFWFLERSLREHGGQCRLKLDWFAGRRIEPDPRRRPRVITDLRGPGGEPLSDHDP
                     IVLDFLLG"
     gene            3601..4890
                     /locus_tag="VD968_00715"
     CDS             3601..4890
                     /locus_tag="VD968_00715"
                     /inference="COORDINATES: protein motif:HMM:NF013056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HYE12943.1"
                     /translation="MAETEEQRPVWRRELVAGVTTFFTMAYIVVVNPSILSTEGTGMP
                     FAGVLTATVVVCFTMTLLMGLYARLPFAVAPGMGINAFFAYTLILGQRVPWPVALGMV
                     FWAGVLFLAVSVTPLRETIARAIPRTLRTAAAAGIGVFLTFIGLRSAGVVAADPVTFV
                     RLGDLDFRAPLMLLGVVVTVLLMKRKSPFAFLAGIFAVTLAAGAFGKVRAPESFFSPP
                     DFGSVFFKLDVLGALKLSLLPGIVAVMFTDLFDSISTFMGVSQAAGLLDEEGNPRRLR
                     EGLIVDSWATLGAGLAGTSSGTAYIESVAGINMGGRTGLTSVFTALCFLPCLFVAPLA
                     AAVPPYATAGVLVLVGVFMFSGVGSIPFERIEDALPAFLTVTLIPLTFSITQGILWGF
                     VTHAGLYVLAGRAREVHPVMYVLALISVGLLLLARHS"
     gene            4891..5409
                     /locus_tag="VD968_00720"
     CDS             4891..5409
                     /locus_tag="VD968_00720"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE12944.1"
                     /translation="MTVLETERLRLRKLSADSDGDAAFIMRLLNEPSFLRNIGDKGVR
                     DLEGARRYITEGPAASYERHGFGLYLVELKGTGEPAGICGLVRREELDGPDIGYALAP
                     EFWSKGYASEAAASVLEFARETLGLRRLAAVVNPDNLASIRLLERLGFRFQRRVTLSK
                     GGAEVRLFEAEL"
     gene            complement(5406..>5721)
                     /locus_tag="VD968_00725"
     CDS             complement(5406..>5721)
                     /locus_tag="VD968_00725"
                     /inference="COORDINATES: protein motif:HMM:NF013492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HYE12945.1"
                     /translation="VMDCDGIKLVAANPEIVSAEGEQEGEEGCLSVGKIHTPLKRPAR
                     VRLRAQGARGETFERDAEGLAARCFLHETDHCDGLLFIDRLTPLRRDMIKRRFQKVKK
                     WR"
BASE COUNT          875 a         1978 c         1940 g          928 t
ORIGIN      
        1 ccgcatagag cttctgcaca gccttctctt ctcgctgccg ggcagcccct tcctctacta
       61 cggcgacgag ataggcatgg gcgacaacat atacctcggc gaccgcgacg gcgtgcggac
      121 tccgatgcag tggtcgtcgg atcgcaacgc cggcttctcg aaggccgact tcgagaagct
      181 ctacttcccc gtcatcagca accccgttta cggctacaac tccgtcaacg tcgagtcgca
      241 gacgcgctac gactcgtcgc tcctccactg gatgcggcag atgattctct tgaggaaggc
      301 ccatcacgtc ttcgggcgcg gcacgatgac tttcctcaag cccgagaacc gcaaaatctt
      361 cgccttcacg cgcgagcacg acggcgagac ggtcttgtgc gtcttcaacc tctcgcagtt
      421 cgcgcagccc gtcgagctgg agctttcggg cttcgagggg cgctcgcccg tcgagatgct
      481 cggcaagacg cgcttccccg ccgtcaccgc ggccccctac cagctcgcgc tcgccccctg
      541 gggcttttac tggttcctat tggaagagaa gtgagtgaaa ataaccgagc caataattcg
      601 gaggcgacaa ggatgctgaa agctttaggg agcggcctgg tgggcgcgtg cgcgctcacg
      661 ctgatacacg agacggcgcg gcggctggcg ccggaggtgg cgccgcgcat ggacgtgctc
      721 ggcatgcgcg ccatagcgaa gacgatgcgc gccgtggacg ccgagccgcc cgcgccgctg
      781 cacgaagtgg cgctcgcggg cgacatcgtc tcgaactcgc tctactacag cctcgtagcc
      841 gtcggcgacc gcgaagacgc gttgcgcaac ggcgcgctgc tcggcctggc cgccggcctc
      901 ggcgccgtct tccttcccaa gccgctcggc ctcggctcgc agcccaccga gcgcacgccc
      961 gcgacgcagt tgatgacggt cgcgtggtac ttggccggcg ggctagccgc cgcggccgcc
     1021 tacaaggcgc tcgcccccga agacgaagac taaaggggcg cggcggcgcg agtttcccga
     1081 tgagagcaag ggggctagtc ccggcggcgg cgcttcttct ggcggttctc tcctcgctcg
     1141 tcgccgcgca gggctgccgc cgccgcgaga aggccgcggc gtccatcccc gcgcccgaga
     1201 gcgcgccgcc cgcgatggtt gacccgtgga gggaggcggc cctcaaagtc gaggcagacc
     1261 gcggcgagcc cacggggcgt ggcgcgccgg gcgtcgaagt ccccccgcag ctcaagcact
     1321 ccgaagaccg ccgcctcttc ctcgccgtgc agatagccga gtggcgcagg ggcgcgcgcg
     1381 cccgcccgca cgacttcgcg gagctagcct ccttgatacg cgggggcgcg ctcgtagagc
     1441 tacccgccct cggcaaggac ttcatactct acggcgtcgg ctacagcgcc acggacgagc
     1501 ccttcacgca ctacgacaag gccacgggcc gcggcgtcac catctacggc ggcgaggagg
     1561 agctgaagca ggagcgcgcg cgcatcgccg acgagctaaa gcagtcgggc gaggagttga
     1621 aggcgctccg caaggcgctc gccgagacgc cgaaggccga gcgcgagctg cgcaaggcgc
     1681 ttcaaggcga ggccgccgag aaggagaggg ccgccgcggc gctcaaggcg cgacagaagc
     1741 tgctcgacga tttttacaac gacggggagt cgcgccgact catcgccgcg gagcgcgaga
     1801 cgctcgcagc gctagccgca gacttcggcg ggcgcgctta taaccttgac gacgccgcgt
     1861 cgcgcaaggc gatgaaggtt cgcatgctta gctttctgcg gcccgaggcg ctgaagattc
     1921 tcgaagaggt cgccgccggc tacgcggaga agttcgagcg cccgctcccc gtcacgtcgc
     1981 tcgtccgccc ggacgaatac cagcgccagc tccgcgagac gaaccccaac gccacgctcg
     2041 ccgagccgcc cccgcacacg acggggctcg ccttcgacat cttctacaag cacatgaccg
     2101 cggccgagca gaacttcctc atggcggagc ttgcgcgcat gcgcgacgag ggcagggtcg
     2161 aggcgctccg cgagcttcgc gaccacttcc acgtcttcgc cttcccctcg ggccgccccg
     2221 acgacgagct gatacgccgc gtcctcgaag gcgacacaaa gaagaagaag aaagccgagc
     2281 cgaaggcgcc cgcgcggaag cctgcacgga agcgctagcg cccgccgggc cgtctctagc
     2341 ccaggaggaa gtcgaggacg atcgggtcgt ggtcggagag gggctcgccg ccggggccgc
     2401 gcaggtcggt gatgacgcgc gggcggcggc gcgggtcggg ctctatccgg cgcccggcga
     2461 accagtcgag cttgaggcgg cactggccgc cgtgctcgcg cagcgagcgc tccaaaaacc
     2521 agaagcacca cttcggcacc cactcggcga ggttccggtg cgccgccaaa tccttcacgt
     2581 cgtagaagag cgtgccggcg cccggctcgt tcaaagtgcg gaactcgtag ccgcgccgct
     2641 ccagctcccg gaacacgtgg cggtcgaacc agctctccgg ccggaggtag tggttgcgta
     2701 tgaagtagcc cggccccatc gcgacgcggc ggaagaagcc gaggatggtg taggcggcgc
     2761 ggctcgaatc gtaggtggtc gtgttccagt cgccgcctac gagcacgggc agccgcggct
     2821 ccaacctctc gacgaaatcc agcacgactc ccatctgccg ggcgcggtgg cgctggctcg
     2881 aatgggcgtc gaggtggagg ctcacggcgc gaaacgcgcc cgacgggtgc tccacgtcgc
     2941 acacgacggc gcgctggctg cccaggcgct tctcccgccc gcgcatcttg tccttgccgt
     3001 tcgggagtgc caccgagcgc gcggccctga cgggccagcg cgaaagcacc gcgttgccgt
     3061 ggagcgactg ctcgttctcg ccctcgacct cgctctcgag gccgctcccc ttgctgagcg
     3121 cgatgtagca gggcgcgaac gcgtagctca tcccgagcgc cccggccagc tcgcgcgcga
     3181 cgtggcggtt gcgcgagcgc gccatgccgt agtcgagctc cgtgaggagc agcacgtcgc
     3241 tcgcgctcaa gacggggtgc gagccgagca cctcggctat ccccccgagc ttcgccccgc
     3301 gctctatgtt ccaggcggtc gcgcgcacgg attttcgggc ggcggccgcg gggggggcgt
     3361 gctcgcccgt ctcgacgctc ccgagcacgc gctctatctc gggccgaagc cgcgcgtaga
     3421 gcgcagacga ctctagcgcg cgggtcgagt cgaaccgtgc gagcgcctcg aagtgcggcc
     3481 tgagattgtg ctccagaggg ttttcggagc ggctttcctt gcgggcgagt gttctcatcg
     3541 ggtcgcgggc gatggtacag tctcgcgcgg ccgactttca accgggggcg gtagtggccg
     3601 atggcggaga ctgaagaaca gcggcccgtg tggcggcgcg agctggtcgc gggcgttacg
     3661 accttcttca cgatggccta catcgtggtc gtcaacccct cgatactctc gaccgagggg
     3721 actgggatgc ccttcgcggg ggtgctcacc gccaccgtcg tggtctgctt cacgatgacg
     3781 ctgctgatgg gcctctacgc gcgcctgccg ttcgcggtcg cgccggggat gggcataaac
     3841 gccttcttcg cctacacgct catactcggc cagcgagtgc cgtggcccgt cgcgctcggg
     3901 atggtcttct gggccggtgt gctgttcctc gcagtctcgg tgacgccgct gcgcgagacg
     3961 atagcgcgcg ccatcccgcg cacgcttcgc accgccgcgg ccgcgggcat cggcgtcttt
     4021 ttaaccttca tcggccttcg gagcgcgggc gtggtcgccg cagaccccgt gaccttcgtg
     4081 cggctcggcg acctggactt ccgcgcgccg ctcatgctcc tcggcgtggt cgtcaccgtt
     4141 ctgctaatga agcgcaagag cccgttcgcg ttcctcgcag ggatattcgc agtcacgctc
     4201 gccgctgggg ccttcggaaa ggtgcgcgcg ccggagagtt tcttcagccc gccggacttc
     4261 gggagcgtct tcttcaagct cgacgtgctc ggcgccctga agctctcgct gctgcccggc
     4321 atcgtcgccg tcatgttcac agacctcttc gactcgatct cgaccttcat gggagtctca
     4381 caggcggcgg gccttctcga cgaggagggc aacccgcgcc gcctgcgcga ggggctcatc
     4441 gttgactcct gggcgacgct cggggcgggc ctcgccggca cctcttcggg gacagcctac
     4501 atagagtctg tggccgggat aaacatgggc gggaggacgg ggctcacgtc cgtcttcacg
     4561 gccctttgct tcctgccgtg cctattcgtc gcgccgctgg cggcggccgt gccgccctac
     4621 gcgacggccg gcgtgctcgt cctggtcggc gtcttcatgt tcagcggcgt cggctcaatc
     4681 ccgttcgagc gcatagagga cgcgctgccc gctttcctca cggtcacgct catcccgctc
     4741 actttctcca tcacgcaagg cattctctgg ggcttcgtca cgcacgcggg cctctacgtg
     4801 ctggcgggcc gcgcgcgcga ggttcacccc gtgatgtacg tgctggcgct catatcggtc
     4861 gggctactct tactcgcgag gcactcatag atgacagttc tggagactga aagactaagg
     4921 ctgcgcaagc tctcggccga ttcggacggc gacgccgcct tcatcatgcg gctgctgaac
     4981 gagccttcgt tcctgcggaa catcggcgac aagggcgtga gggacttgga gggcgcgcgg
     5041 cgctacatca cagaaggccc ggcggcgagc tacgagaggc acggcttcgg gctctacctt
     5101 gtggagctga aggggacggg cgagccggcc ggcatttgcg ggctggtcag gcgcgaagag
     5161 ctggacgggc cggacatagg ctacgcgctc gcgccggagt tctggtcgaa gggctacgcc
     5221 tcggaggcgg cggcgagcgt gcttgagttc gcgcgcgaga ctttgggcct gcggcgcctc
     5281 gcggccgtcg tcaaccccga caacctggcg tcaatacggc tgctcgaaag gctcggcttc
     5341 cgattccaac gcagggtgac gctctcgaag ggcggggctg aagtccgcct gttcgaggcc
     5401 gagctctaac gccacttctt caccttctgg aacctgcgct tgatcatgtc gcggcgcagg
     5461 ggcgtcaggc ggtcaatgaa gagcaggccg tcgcagtggt cggtctcgtg taggaagcag
     5521 cgggcggcca ggccctccgc gtcgcgctcg aaggtctcgc cgcgcgcgcc ctgcgcgcgg
     5581 aggcgcacgc gcgccggccg cttcaagggc gtgtgaatct tcccgaccga caggcagccc
     5641 tcctcgccct cctgctcgcc ctcggccgag actatctcgg ggttggcggc gacgagcttt
     5701 atcccgtcgc agtccatcac g
//
LOCUS       DASPKR010000028         3432 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1168315, whole genome shotgun sequence.
ACCESSION   DASPKR010000028 DASPKR010000000
VERSION     DASPKR010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3432)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3432
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1168315"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..762
                     /locus_tag="VD968_00730"
     CDS             <1..762
                     /locus_tag="VD968_00730"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYE12946.1"
                     /translation="SVGLYVFVSSISVYGDFSRPVDEDSPAATMPDETVEEITGETYG
                     PFKALSERAAERAMPGRTLVVRPGLIVGPHDPTVRFSYWTARVARGGEVLAPGRPGKQ
                     VQFIDARDLSDWIVRMAEERRTGVFNATGPERKLTMGEFLEECRAVSGSDASFTWVGE
                     DFLLERGVGEWGEMPLWLSDANQQSRYHNSVSIEKALAAGLTFLPLAETIRDTLAWLR
                     EGARPPAKDGVHTPDLTLRPERERELLAEWHEKTG"
     gene            complement(783..1208)
                     /locus_tag="VD968_00735"
     CDS             complement(783..1208)
                     /locus_tag="VD968_00735"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HYE12947.1"
                     /translation="MMTIRGVVCDREAYFVRDTATALDAADYMAGRDIGAVCVLDDAD
                     RLVGIFSERDILKRVIAERRDPAGVPIREVMSEPRGHITCDDTPHSALELMEKVGSRH
                     LPVMDGDKFIGMLSMRDIMRVEISEQGAELQLLHEYISH"
     gene            complement(1333..2358)
                     /locus_tag="VD968_00740"
     CDS             complement(1333..2358)
                     /locus_tag="VD968_00740"
                     /inference="COORDINATES: protein motif:HMM:NF033668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PA0069 family radical SAM protein"
                     /protein_id="HYE12948.1"
                     /translation="MRYVENPPNPWLSTSVEWVGEPPETRIEVFEETETRRVITHNDS
                     PDVGFDYSVNCYRGCTHACSYCFSRPTHEYLGFGAGTDFETRIVAKVRAPELLREEFM
                     RPSWRGDEIVFSFTSDPYLPLEAHYRLTRHCLEVCLEFRNPVGVVTKSALVRRDAELL
                     AELAREAGAAVYFSISTADPDISRALEPFTPPPEARFRAMAELSAAGVPVGLGIAPVI
                     PGLNDSDIPGLLKRAKEAGARTAFINLLRLPGSVAPYFEQRLRERLPTRADRVLSRLR
                     EARGGRLNSARFGERMRGKGEYWEVIEKSFRLHCARLGFNKTGRGHDGGGRRTFRRPS
                     PQGLLFE"
     gene            complement(2486..2866)
                     /locus_tag="VD968_00745"
     CDS             complement(2486..2866)
                     /locus_tag="VD968_00745"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYE12949.1"
                     /translation="MSGAGVTGLELLFLEVNSLDESLDFYAAGLGFEIESHERMAEPP
                     MATLRSGGLRLMLAQVPLAMARRGRGVHFFLTVADVEDFYARLRSRGFELAPPEDEGW
                     GGRFVTLEDPDRYRLFFVTWDERG"
     gene            complement(2863..>3432)
                     /locus_tag="VD968_00750"
     CDS             complement(2863..>3432)
                     /locus_tag="VD968_00750"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HYE12950.1"
                     /translation="VSLGGTDEKDFYSILGAGEGDAREEIERRYKRLARERHPDRGGD
                     EEEMKALNEAWRVLGDDTARLDYDSRRRARRPRQKYQAHTPASSPGAAADPFSGRIVG
                     AWFCLFVGLVLLFLVKAHYVRFLWPLALLALGLVFFGVLMAHGALTFARSRVGPGHLM
                     RRLVWAQEVVFWSCVVAGGYGVYLLLVAL"
BASE COUNT          559 a         1120 c         1217 g          536 t
ORIGIN      
        1 tcggtcgggc tctacgtctt cgtctcgtca atctctgttt acggagactt cagccggccc
       61 gtggacgaag attcgcccgc ggcgaccatg ccggacgaga cggttgagga gataacgggc
      121 gagacctacg gcccgttcaa ggccctgtct gagcgtgctg ccgagcgggc gatgccgggc
      181 cgcacgctcg tcgtccgccc cggcctcatc gtcggcccgc acgacccgac cgtgcgcttc
      241 tcctactgga cggcgcgcgt cgcccgcggc ggcgaagtgc tcgcgcccgg ccgccccggt
      301 aagcaggttc agttcattga cgcccgcgac ctctcggact ggatagtgcg aatggctgag
      361 gagcggcgca cgggtgtttt caacgcgacc gggcctgagc gcaagctgac gatgggcgag
      421 ttcctggaag agtgccgggc cgtgtcgggg agcgacgcga gctttacgtg ggtcggggag
      481 gattttctct tagagcgcgg cgtaggcgaa tggggagaga tgccgctctg gctctccgac
      541 gcgaaccagc agtcccgtta tcacaactcc gtgagtattg aaaaggcgct cgcggccggg
      601 ctcacgttcc tccctctcgc agagaccata cgcgacacgc tcgcgtggct gcgcgagggg
      661 gcgcgccctc cagcgaagga cggcgtgcac acgcccgacc tcacgctcag gcccgagcgc
      721 gagcgcgaac tgctcgccga gtggcacgaa aaaaccgggt gaggaagggc ggccgcggcc
      781 gctcagtgcg agatgtactc gtgaaggagc tgaagctctg cgccctgctc gcttatctcg
      841 acgcgcatga tgtcgcgcat cgagagcatg ccgatgaatt tgtcgccgtc catgacgggc
      901 aggtggcggc tcccgacctt ctccataagc tctagcgccg agtgcggcgt gtcgtcgcag
      961 gtgatgtggc cgcgcggctc gctcatcacc tccctgatgg ggacgcccgc cgggtcgcgc
     1021 cgctcggcga tgacgcgctt gaggatgtcg cgctcggaga agatgccgac gagcctgtcg
     1081 gcgtcgtcga gcacgcagac ggcgccgatg tcgcggcccg ccatgtagtc ggcggcgtcg
     1141 agcgccgtcg ccgtgtcgcg cacgaagtag gcttcccggt cacacacaac gcctctgatg
     1201 gtcatcatcc cagtcaactc cctccggtaa ccaggttcta gctcagagcg cgcgtattat
     1261 acaaaggcgg cccgccccat ttgaagagtt ttatgcgggc gggtttgtcc ctcttttctc
     1321 atcctgcgcg gctcactcga agaggagccc ctgcggcgag ggccggcgga atgtgcggcg
     1381 gccgcccccg tcgtggccgc gccccgtctt gttgaagccg aggcgcgcgc agtgcagccg
     1441 gaagctcttc tcgatgacct cccagtactc gcccttgccg cgcatgcgct cgccgaagcg
     1501 ggctgagttg aggcgcccgc cccgcgcttc gcgcaggcga gagagcacgc ggtctgcgcg
     1561 ggtcggcaga cgctcgcgca gccgctgctc gaagtagggc gcgacgctgc cgggaagcct
     1621 gaggaggttt atgaaggccg tgcgcgcgcc ggcttctttc gcccgcttca aaaggccggg
     1681 gatgtccgag tcgtttaggc cgggtatgac gggcgctatc ccgagcccca cggggacgcc
     1741 ggccgcggac agctcggcca tcgcgcggaa gcgggcctcg ggcggagggg tgaagggctc
     1801 gagggcgcgc gagatgtcgg ggtcggccgt cgagatggag aaatagacgg cagcgccggc
     1861 ctcgcgcgcc agctccgcga gcagctctgc gtcgcggcgc acgagcgccg acttcgtcac
     1921 gacgccgacg gggttccgga attcgaggca gacttcgagg cagtgccgcg tcagccggta
     1981 atgcgcttcg aggggaagat aggggtctga ggtgaaggag aagactatct cgtcgccccg
     2041 ccacgagggg cgcatgaact cctcccggag gagttcgggg gcgcgcacct ttgcgacgat
     2101 gcgcgtctcg aagtccgtgc cggcgccgaa gccgaggtac tcgtgcgtgg ggcggctgaa
     2161 gcagtaggag caggcgtgcg tgcagccgcg gtagcagttg accgagtagt cgaagcccac
     2221 gtcggggctg tcgttgtgcg tgatgacgcg gcgcgtctcg gtctcctcga agacctcgat
     2281 tctggtctcg ggcggctcgc ccacccactc gacgctggtc gagagccacg ggttcggggg
     2341 gttttcgacg tagcgcataa aagagttctc ccggccggcc cgtcggtgac gaatgggccg
     2401 ctggctgtca tccacttagg ctgttcggga gtttcgtaca gcgtgaatcg ggagcgcgaa
     2461 gtgaagtcat tatagcagca cttctttagc cgcgctcgtc ccacgtgacg aagaagaggc
     2521 ggtagcggtc ggggtcttcg agcgtgacga agcggccgcc ccagccctcg tcctctggcg
     2581 gcgcgagctc gaagccgcgc gagcgcagac gcgcgtagaa gtcttccacg tcggcgaccg
     2641 tcaggaagaa gtggacgccg cgcccgcgcc gcgccatcgc gagcggcacc tgcgcgagca
     2701 tcaaccggag gccgccggag cgcagcgtcg ccatcggcgg ctcggccatg cgctcgtgcg
     2761 actctatctc gaagccgagc cccgcggcgt agaagtcgag cgactcatcg aggctgttga
     2821 cctcgaggaa cagaagctcc aggcccgtca cgcccgcgcc gctcacaacg ccaccagaag
     2881 cagatagacg ccgtagccgc ccgcgacgac gcacgaccag aagacgacct cctgcgccca
     2941 gaccagccgc cgcatgaggt ggccggggcc gacgcggctc cgcgcgaacg tgagcgcgcc
     3001 gtgagccatc agcacgccga agaagacaag gcctagggcg agcagggcga gcggccagag
     3061 gaagcggacg tagtgcgcct tgaccaggaa gaggagcacc aggccgacga agaggcagaa
     3121 ccacgctccg acgatgcggc cgctgaaggg gtctgccgcg gcgccgggcg aagaggcggg
     3181 cgtgtgggcc tgatatttct ggcgcgggcg ccgggcgcgc cgccgagagt cgtagtcgag
     3241 tcgcgccgtg tcgtcgccga gcacgcgcca ggcttcgttg agcgccttca tctcctcctc
     3301 gtcgccgccg cggtcagggt ggcgctcgcg cgcgaggcgc ttgtagcggc gctcgatctc
     3361 ctcgcgcgca tcgccctcgc ccgcgcccag gatggagtag aaatcctttt cgtccgtgcc
     3421 gcccaaagag ac
//
LOCUS       DASPKR010000029        14778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1427208, whole genome shotgun sequence.
ACCESSION   DASPKR010000029 DASPKR010000000
VERSION     DASPKR010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 14778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14778)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14778
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1427208"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VD968_00755"
     CDS             <1..253
                     /locus_tag="VD968_00755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="glucosamine-fructose-6-phosphate
                     aminotransferase"
                     /protein_id="HYE12951.1"
                     /translation="YEKTHSNIVEVKAREGVVISVLTEGDEMSAKVSDHVIEIPPSSD
                     LLSPILAIIPLQLLAYHIAVRRGCDVDQPRNLAKSVTVE"
     gene            complement(688..7095)
                     /locus_tag="VD968_00760"
     CDS             complement(688..7095)
                     /locus_tag="VD968_00760"
                     /inference="COORDINATES: protein motif:HMM:TIGR03696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat-associated core domain-containing
                     protein"
                     /protein_id="HYE12952.1"
                     /translation="MKSARTVSPRRLLLAALLCALARPGAFAQSSPQTAARPDRGAVS
                     GAAYSVSDIESVNLTSGNVNISIPLASLPPVAGGKLSWTVSATYNSKLWNVTRAQHAY
                     IPNATWQPYTVDTPQLSDLGGWRVGGAYHLSVRNAHEDFDYEIPPPDGSLPYWERQLL
                     LREWYKVVLRTPDGAERELRPEGHAPYSGTQDFLRGYFDLLPSATNPVRYYSFDGTYL
                     TVIVKGVNDWTLFMPDGTQVVQTADGVQRVKDNNGNSIKIFSESGASFTNHYQDEQTG
                     REIKVIHDPAAGGGQGQFRVEYQVAGGAWMSVLVNMGTTTVRGKVYTTGGWDASVGEE
                     CQHERALTATGVSVVREIVFPQTEPGQAGRRFTFGYNSDATEQAAYGLYRPSCGAAPE
                     TLNTTASAGWGSLSQMTTPLGATVAYSYRLDHDNETPVLSTDSIAEEPITRKQVTHDG
                     TTDTWEYDSIGEAGGGVQNPDGTYSHEESYAHSPGYGYAVGRAGLVYRSTRSGVVVER
                     HWTNLTFAGAATGSPGGEVSFNPVVDAEYTTLTDAQGVALKMSAKTFSHDLNGNVTEV
                     KEYDWFSPSLVARDGERVPAGVPAEATLLRTTVTSYHDSPGTAASSSLVYAKRALARG
                     TPSIIRAVREASVGASITRFSYDGQAYGAAPTKGNVTQVSRLDDKGDAGASNDTWATA
                     SRTYDSYGNVLTATDANGNLTEFSYEDATHALPTKTTVDPLNGTGPQITRAAYDYFTG
                     LVTSTTDANNQTTEISYVNQLTGEPDPFARPGVVTAPAVAISGVTQRRKVSTFYEDAA
                     RRVRAESDLAAEGDRRLKSRETKDELGRVVLAEHGEGGAAYTISAQTAYVQMGRVVLT
                     SHPKRAGDGSTPEGWERVTRDAAGRVVEVATFQGAARPEPAGVQGTPAFKGAVTTSYW
                     ANETTVTDQDGKARKSVADALGRLSKVIEAPGVPGYGFETFYTYDQLGNLRRVEQGGQ
                     RRFFLYDSLSRLVRAKHPEQGAFPTDAEFPALSDSYPDGANNGLWSSGYKYDAAGNLI
                     KRRDARGVMTTYTYDGLNRNTTVRYAGETAPNATPAVNRSYDRATLGKGRPWKSEAAG
                     VALTTVNAYDESGRPAQHTQQFWLNNAWGQPFAVARAYDLAGNVASQTYPSGRSVGYT
                     YDAAGRLSSFAGNLGDGVSRAYSDSFIYDAAGRVRQERFGTQAPVYNKRFYNVAGQLS
                     EIRVSTFAADAPGQETNWNRGAIINHYSNQSWAGSGTDNNGNLRKQDIYVPGDEAVTG
                     FWLTTFFYDYDPLNRLARVREVQGGQEKWAQGYAYDRWGNRLVDAAASWDNSQTQWRV
                     PEPQFDAADLPATNRLYAPGDTALPDSQRRMRYDAAGNLTRDAYTGEGARAYDAENRM
                     TSAEFSASQAALYTYDADGRRVKRGAGAGAEVWQVYGFGGELLAEYAAGASPASPQKE
                     HGYRNGELLVTAGPPAPGAGPRTNVALASNGATASSSSSITGYPASSVINGDRRGLNW
                     GSGGGWNDSTADSYPDWVEVTFAGAKIINEVSVFTAQDNIASPLEPTEAMTFTQYGIK
                     SFDVEYWDGSAWATVPDGSVTDNSLVWRRFTFPPLTTPKVRVKVGGALFHHSRVVELE
                     AYEVPGAQLVAVVSSLGVLRNNYTGQVGMKVSVGAQPLTVTSLGRMCASGNAKAHTLK
                     VIKASDNTVAASASVSMSGCAPGQFKYAALASHVTLSANASYYVVSTEVSGGDKWHDY
                     SGTSLTPSTAASITSGAFSGNGTSWTPAGGAGNSYVPVDFKYTTAEADLRWLVADQLG
                     TPRMTLDPTGALDAVTRHDYLPFGEELPAGAAGRVTGQGYGQVDNVRQKFTGYERDVE
                     TGLDYAQARYYGNSTGRFTSPDPLLSSANPPSPQSWNRYSYVLNNPLLYVDPTGLEWR
                     INNTPNNDGLCTVSWYGEGDDRTGTTELKPDGSGRITYKISDKYQIELNPNGPAGQIV
                     AYGLNIMRSGTLAGYLLTSEPWGTPREVAQGWKITYTPEYEAEMMSWGAIRERPDIII
                     SAVGLANGVGRGLTARSTSSAVTEDVLVLGRGPMSRLERLAAQEGGRISTTSSTSARE
                     IFRMNYRDIRSSDRIIYYMDNVPRTLEEAIQIGGGQFSRAEVFMIQSRPDLLKKTRFK
                     FEF"
     gene            complement(7109..7936)
                     /locus_tag="VD968_00765"
     CDS             complement(7109..7936)
                     /locus_tag="VD968_00765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12953.1"
                     /translation="MRVKLPALRRCRTATSATAIFFALGLCAAALTVAGLRAGRRATS
                     AGAAAPVSQQPPASARSHRNLSLSPAAHAMSRRLGRRFREEGREVTVFACTLSVGDEA
                     RRARVRREQTGDSEVVEVTFANRDTLVWDAERGATSPGHEITDEDRAVVERIALDSPD
                     RFVLAQLRGASYYVVARGVRLSGDGGGDGYAGPLYDVVRVAGQEPEGGWRLYYIDSST
                     GLLGRVVSEWRGGQLVAELTGWGDHGGELWPSRTVWSLEGQVVMELTLTNVTNGPAQ"
     gene            complement(8175..9344)
                     /locus_tag="VD968_00770"
     CDS             complement(8175..9344)
                     /locus_tag="VD968_00770"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF022137.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HYE12954.1"
                     /translation="MGQPEVTITRKGAERARGGHLWVYRSDVRDAGGAAGGAVVRVRE
                     ERGRFLGQALYSDRSEIALRVLTAGDEEVGREWWRARMRSAAARREGLAREADAFRLI
                     YSEGDLLPSLIVDRYGDVLVVQTLSQGTEALKATIVELLVEEFAPRAIVERNDVRVRS
                     LEGLPLRSGVLWGGEPGEIEINQHGVRLLVSPLGGQKTGAFLDQRENHRAARSWARGR
                     ALDCFTFHGGFALSVAPACESVLGLDVSAEAVASARRNAELNGAANAEFREANVFDAL
                     REMEAAGASFDTIVLDPPAFAKNRASLPAAARGYKEINLRALKLLRPGGTLITCTCSY
                     HMTEPLFLETIASAARDARRRAQLVERRTQASDHPVLLGVPETLYLKCVVARVVE"
     gene            complement(9367..10617)
                     /locus_tag="VD968_00775"
     CDS             complement(9367..10617)
                     /locus_tag="VD968_00775"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF012585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HYE12955.1"
                     /translation="MAIKRIGILVGGGPAPGTNGVISAVVIEAVKAGCAAVGFHDGFE
                     WLAQRYTDEQHEMTIDEVSRIHVDGGVILGTSRRDITRDPESLDNTVAALRKLGIEAL
                     VTVGGDDLVKSSAAIERATAGEIRVVQVPKSIDNDLWLPLPVTTLGYETARHVGVELV
                     KRLMEDAKTTSRWYLGVTMGRPTGHLTLGIGKAAGATCTIIPEEFGGGGARVSLSDIC
                     DIVEGTVIKRRAMGRPHGVVLLSEALVEHFDPKEVAELQDVDRDAQGNIRVAEIDLGR
                     KVKSEVQARLERRGVKATVVDKTIGYELRCAPPIPFDAEYARDLGYAAFKHLSAGGSG
                     SMITTQGGEFEAVPFSDVLDPATGRGRQRFVDVGTESYQVARDYMMRLGRKDFRDGAW
                     VAKLAEAGGLTTVEFMSRFGKYAR"
     gene            complement(10634..11893)
                     /gene="pfp"
                     /locus_tag="VD968_00780"
     CDS             complement(10634..11893)
                     /gene="pfp"
                     /locus_tag="VD968_00780"
                     /inference="COORDINATES: protein motif:HMM:NF041103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphate--fructose-6-phosphate
                     1-phosphotransferase"
                     /protein_id="HYE12956.1"
                     /translation="MATKNVLAILVGGGPAPGINAVISAAAIEAANEGFEVLGVQDGF
                     KHLIREDASKVRPLRIEDVSRIHLDGGSVLGTARDNPTKSEKATRAVVETLRSLGVTH
                     LVTIGGDDTALSSSFVAERSGHQIRVVHVPKTIDNDLPLPAHVPTFGYQTARHVGVEL
                     VYNLMEDARSTKRWFVVVAMGRKAGHLALGIGKAAGATLTVIGEEFERETVAFSDICD
                     IVEGAIIKRRALGRQFGVAVLAEGLIEKLDPAELAELQDVERDEHGHIRFAEVDLARK
                     VKAEVQGRLAGRGLRVTIINKNIGYELRCADPIPFDAAYCRDLGYSAVRFLTSGGSEA
                     MISIQGGKMIPIPFADIREPGTGRTRVRMVNVASEGYRVAREYMIRLEPGDFADASWA
                     RKMAQAGNLSEEQFRDRFGYMSGHVSS"
     gene            12052..12516
                     /locus_tag="VD968_00785"
     CDS             12052..12516
                     /locus_tag="VD968_00785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012525265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:12190..12192,aa:Sec)
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HYE12957.1"
                     /translation="MPEVGDMAPDFELPSHLAKDKKVRLSDFRGKQNVVLAFYPLAWT
                     PVUTAQMPAYEADLDRFKGYDAQVLGISVDSVPCNAAWAKSLGGLSYDLLCDFHPKGE
                     VAKAYGAWREKDGISERALFIVDKQGKLAYKDIHDIGDQPDNEELLDVLRKL"
     gene            12608..13033
                     /locus_tag="VD968_00790"
     CDS             12608..13033
                     /locus_tag="VD968_00790"
                     /inference="COORDINATES: protein motif:HMM:NF019003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050485 - oxidoreductase activity, acting
                     on X-H and Y-H to form an X-Y bond, with a disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine/sarcosine/betaine reductase
                     selenoprotein B family protein"
                     /protein_id="HYE12958.1"
                     /translation="MPLSRKCVPFTPFEGELARSTVAIVSAGGVHLREQEPFNTADEL
                     GDLTFRVIPPDAGAPELMVSHHHYDHTDADRDINVVFPLDVLRDLREEGSIRELARKH
                     VGYMGYTMQLKAMYEGTAPEIANEIDRGSGADAVVLTGG"
     gene            13082..13342
                     /locus_tag="VD968_00795"
     CDS             13082..13342
                     /locus_tag="VD968_00795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12959.1"
                     /translation="MRGIPTVLITVSPEVSAQMRPPRALYPKGFRVGNSTGRPGMREL
                     QRKVLRDALSLLTADTRPGRVVTIEYPEYGEQYEPPKVKSKG"
     gene            13380..14492
                     /locus_tag="VD968_00800"
     CDS             13380..14492
                     /locus_tag="VD968_00800"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF002872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006002 - fructose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent 6-phosphofructokinase"
                     /protein_id="HYE12960.1"
                     /translation="MLKTIGLVTGGGDAPGLNAVIRAAVKTAVNEYGLRVIGVEDGYD
                     GLLGETCTRGLTAADVRGLLPRGGTLLGTRNRGRFVVREKGGVSHMPEEVFREAIGNM
                     GRLGIDALVAIGGEGTLAIASEFHRHGFPVVGVPKTIDNDLAATELTFGFMTALDIAT
                     EALDRLHTTAESHDRVMVLEVMGRHAGWIALYAGVSGGADVILIPEIPFSMENVAEKV
                     RERDGCGAQFSIIVVAEGAKEVEGEEVYVAAGDRQSAPRLGGIGHRVAEEVARRTGKE
                     SRCVVLGHLQRGGSPNAFDRLLATSYGSAAVRALMSGERGVMVAHQAATVRTVPLADA
                     VANIKTVPSDSQIVRTARDVGASFAAPDEGRQHQRC"
     gene            14519..>14778
                     /locus_tag="VD968_00805"
     CDS             14519..>14778
                     /locus_tag="VD968_00805"
                     /inference="COORDINATES: protein motif:HMM:NF015414.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HYE12961.1"
                     /translation="MTEGIKQKLQKELDELDTELRVHLPREIKRAKEFGDLRENAEYH
                     AALARQQFVQARIRDLRQRLSEVSSIDLSKIPRDRIAYGSTVV"
BASE COUNT         2389 a         4823 c         4967 g         2599 t
ORIGIN      
        1 ctacgagaag acgcactcga acatcgtcga ggtcaaggcg cgcgagggcg tcgtaatctc
       61 ggtgctcacc gagggcgacg agatgtccgc caaagtctcc gaccacgtca tagagatacc
      121 gccgtcctcc gacctcctct cccccatcct cgccatcatc cctctccaac tcctcgccta
      181 tcacatagcc gtccgccgtg gctgcgacgt tgaccagccc cgcaacttgg cgaagtccgt
      241 tacggttgag taggcctgtc accccggcct gcctcgcatg aggcaggccg ggtcattgct
      301 tcgctatatt acagccccaa cctccggaca tgtggatagc aataataatt tatcctcggg
      361 tactctaaat cttgcattta tattccgcta taagaaccgg ccttaccagg ttaagcattc
      421 ctatgagccc aaacacaatc gtcaattgca gcctgtaact catctaccgt tttatacatc
      481 ccgggggttg ctacgaattg tacactccga gggtacatct ccatatattt tctttggact
      541 atgaaattcc attcctttgt cttgataaca tccaagactt cgcctgcagc attgaccaca
      601 acaatagacc attgtggcgc gtatttacgc agtggctcac gcacatctaa gttatttatt
      661 aactcaaaaa ctctttcaac ggtcatgtta gaactcaaat ttaaaccgag tctttttcag
      721 taagtccgga cgagattgaa tcataaatac ctcggcccgc gagaattgcc cgcctcctat
      781 ttgtatagcc tcttcaagag tgcgcggcac attgtccatg taatagatga ttctatcgct
      841 actgcggata tctcgatagt tcatcctgaa tatttcccgc gcgctggtgc tgcttgttgt
      901 tgatatacgt cctccttctt gcgcggcaag cctctcaagc cttgacatag gcccgcggcc
      961 tagaacaagc acgtcctcag tgacagcgct actggtggag cgtgcagtga ggcccctgcc
     1021 aacgccgtta gcaaggccga cagcactaat aatgatgtca ggcctttcac gtatcgcccc
     1081 ccaactcatc atttctgctt cgtactcagg cgtgtatgta attttccacc cttgagcaac
     1141 ttcccgaggc gtcccccaag gctcagacgt caagagataa cctgccagag ttcccgaccg
     1201 cataatattc aagccataag cgactatttg tcctgccggc ccattgggat ttaactcgat
     1261 ttggtattta tcggaaatct tataggtaat tcgcccgcta ccatcgggct tcaactcggt
     1321 tgtaccggtt ctgtcgtccc cttccccgta ccaactaaca gtacacaagc catcattgtt
     1381 aggggtatta tttatgcgcc actccaaacc tgtcgggtcg acataaagca atggattatt
     1441 tagcacgtaa gaatagcggt tccagctttg cgggctaggg gggttggcag atgagaggag
     1501 agggtcaggt gaggtaaatc gtccagtgga gttaccataa tatctcgcct gcgcgtaatc
     1561 caaccccgtc tcaacatccc tctcataccc ggtaaacttc tgcctgacgt tatccacttg
     1621 accgtaaccc tgcccggtta cccggccggc ggcgccggcg gggagttctt cgccgaaggg
     1681 gaggtagtcg tggcgggtga cggcgtcgag ggcgcccgtc gggtcgagcg tcatgcgggg
     1741 ggtgccgagc tggtcggcga cgagccagcg gaggtcggcc tccgcggtcg tgtacttgaa
     1801 atccacgggg acgtaggagt tgccggcccc gcctgccgga gtccagctcg tgccgttgcc
     1861 gctaaaggcg ccgctggtga ttgaggcggc ggttgatggg gtgagagagg tgcctgagta
     1921 gtcgtgccac ttgtcgccgc cggagacctc cgtgcttaca acgtagtacg aggcgttagc
     1981 ggagagcgtg acgtgggagg cgagcgcggc gtacttgaac tgtcccggcg cgcagcccga
     2041 catggagacc gaggcggagg ccgccaccgt gttgtcagag gctttaatca ctttgagggt
     2101 gtgcgccttc gcgttgccgg aggcgcacat gcggccgaga gaggtgacgg tgagcggttg
     2161 ggcgccgacg ctcaccttca tcccgacctg acccgtgtag ttgtttcgga gcacgccgag
     2221 cgatgagacg acggcaacta gctgtgcgcc cggcacctcg taggcctcga gctcgaccac
     2281 gcggctgtgg tggaagagtg cgccgccgac cttgaccctc accttggggg tggtcagcgg
     2341 cgggaaggtg aaccggcgcc acacaaggct gttgtcagtc acactcccgt cgggcacggt
     2401 cgcccaggcc gagccatccc agtactccac gtcgaaagac ttaatgccgt actgagtgaa
     2461 cgtcatcgcc tcggtcggct ccaaagggct ggcgatattg tcctgcgcgg tgaagaccga
     2521 gacctcgttg atgattttag cgcccgcgaa ggtgacctct acccagtcgg ggtaggagtc
     2581 ggccgtggag tcgttccagc cgccgcccga gccccagttc aggccgcgcc ggtctccgtt
     2641 gatgacggag gaggccgggt agcccgtgat ggaggacgag gacgaggccg tcgcgccgtt
     2701 tgaggcgagc gccacgttgg tgcgcggccc cgcgccgggg gcgggaggcc cggccgtgac
     2761 gagcagctcg ccgttgcggt agccgtgctc cttctgcggc gaggcggggg aggcacctgc
     2821 ggcgtactcg gccagaagtt cgcctccgaa gccgtaaacc tgccagacct ccgccccggc
     2881 cccggcgccg cgcttcacgc gccgcccgtc ggcgtcgtag gtgtagaggg ccgcctgcga
     2941 cgcgctgaac tcggccgagg tcatcctgtt ctcggcgtcg taggcgcgag cgccttcgcc
     3001 cgtgtaggcg tcgcgcgtga ggttgcccgc cgcgtcatag cgcatgcgcc gttgcgagtc
     3061 gggcagggcc gtgtcgcccg gcgcgtagag gcggttggtc gcggggaggt ctgccgcgtc
     3121 gaactgcggc tcggggacgc gccactgcgt ctgcgagttg tcccaactgg cggccgcgtc
     3181 aacgagccgg ttgccccagc ggtcgtaagc gtagccctgc gcccacttct cctgcccgcc
     3241 ctgcacctcg cgcacgcggg cgagccggtt cagcgggtcg tagtcgtaga agaaggtcgt
     3301 gagccagaag cccgtgacgg cctcgtcgcc ggggacgtag atgtcctgct tgcgtaggtt
     3361 cccgttgttg tccgtgccgg agccggccca cgactggttg gagtagtggt tgatgatcgc
     3421 cccgcggttc cagttcgtct cctgccccgg cgcgtcggcg gcgaaggtgc tcacccttat
     3481 ctcggagagc tgcccggcaa cgttgtagaa gcgtttgtta tagacgggcg cctgcgtgcc
     3541 gaagcgctcc tgtcgcacgc ggcccgccgc gtcgtagatg aaggagtcgg agtaggcgcg
     3601 gctgacgccg tcgcccagat tgcccgcgaa ggaggagagg cggccggcgg cgtcgtacgt
     3661 gtagccgacc gagcggcccg acgggtaagt ctgcgacgcg acgttgccgg cgaggtcgta
     3721 agcgcgcgct accgcgaaag gctgccccca tgcgttattc aaccagaact gctgcgtgtg
     3781 ttgcgcgggc cgccccgact cgtcgtaggc atttacggtc gtcagcgcga cgcccgccgc
     3841 ctcgctcttc caggggcgcc ccttgcccag agtcgcgcgg tcgtaggagc ggttgacggc
     3901 cggcgttgcg ttcggcgcgg tctcgcccgc gtagcgcacc gtcgtgttgc ggttgaggcc
     3961 gtcgtaggtg taggtggtca tcacgccgcg agcgtccctg cgcttaatga ggttgccggc
     4021 ggcgtcgtac ttgtagccgg aagaccagag gccgttgttc gcgccgtcgg ggtaggagtc
     4081 tgagagcgca gggaactcag cgtccgtcgg gaacgcgccc tgctcggggt gtttggcgcg
     4141 cacgaggcgg gagagcgagt cgtacaggaa gaagcgccgc tggcctccct gctccacgcg
     4201 gcgcaggttc ccgagctggt cgtaagtgta aaaagtctcg aagccgtagc cggggacgcc
     4261 cggcgcttcg attaccttcg agagccggcc gagcgcgtcc gccacgctct tgcgcgcctt
     4321 gccgtcctga tcagtgacgg tagtctcgtt ggcccagtag gaggtcgtca ccgcgccctt
     4381 gaaggccggg gtgccttgca cgccggccgg ctcgggccgc gcggccccct ggaacgtcgc
     4441 gacctccacg acgcggcccg ccgcgtccct ggtgacgcgc tcccagcctt cgggcgtgct
     4501 gccgtcgccc gcgcgcttcg ggtgcgaggt cagcacgact cgtcccatct gcacgtaggc
     4561 ggtctgcgcc gagatggtgt aggcggcgcc gccctcgccg tgctcggcga gcacgacgcg
     4621 gcccaactcg tccttcgtct cgcgcgactt gagcctgcgg tcgccctcgg ccgccaggtc
     4681 cgactcggcc ctgacgcggc gggccgcgtc ctcgtagaag gtggagacct tccggcgttg
     4741 cgtgacgccg ctaatagcca ctgccggggc cgtcactact ccgggcctcg cgaacgggtc
     4801 gggctcgccc gtcaactggt tcacgtagct tatctcggtc gtctggttgt tcgcgtcggt
     4861 tgtgctcgtg acgagccccg tgaagtaatc gtaggcggcg cgcgtaatct gcggccccgt
     4921 cccgttcagg gggtcaacgg tcgtcttggt cgggagggcg tgcgtcgcgt cctcgtagga
     4981 gaactctgtg aggttgccgt tggcgtcggt cgccgtcagc acgttgccgt aagagtcgta
     5041 ggtgcgcgac gccgtggccc acgtgtcgtt cgaggcgcct gcgtcgccct tgtcatccag
     5101 gcggctgacc tgcgtcacgt tccccttcgt cggcgcggcc ccgtaagcct gcccgtcgta
     5161 gctgaagcgc gtgatgctcg cgcccacgct cgcctccctg acggccctaa tgatcgaggg
     5221 cgtacccctc gcgagcgccc gcttggcgta cacgagggag gaggaggcgg ccgtgccggg
     5281 gctgtcgtga tagctcgtga ccgtcgtgcg cagcagagtc gcttccgcag gcacgccggc
     5341 aggcacacgc tcgccgtcgc gcgcgacgag cgacgggctg aaccagtcgt actccttgac
     5401 ctcggtgacg ttgccgttaa ggtcgtgcga gaacgtcttc gcagacatct tcaaggcgac
     5461 gccctgcgcg tccgtcagcg tcgtgtactc ggcgtccacc accgggttga aactcacctc
     5521 gccgccgggc gagcccgtag cagcgcccgc gaacgtcagg ttcgtccagt ggcgctcgac
     5581 caccacgccg gaacgggtag atcggtacac aaggccggcc ctcccgacgg cgtagccgta
     5641 gcccgggcta tgagcgtagg actcctcgtg cgagtacgtc ccgtccgggt tctgcacgcc
     5701 gccccccgcc tcgccgatgg agtcatactc ccaggtgtcg gtcgtgccgt cgtgtgttac
     5761 ctgcttccgc gtgatcggct cctcggcgat cgagtccgtg ctcagcacgg gcgtctcgtt
     5821 gtcgtggtcg agcctgtacg agtaggcgac cgtggccccg agcggggtgg tcatctggct
     5881 gagagagccc cacccggccg aggcggtggt gttgagcgtc tcgggcgcgg ccccgcagga
     5941 ggggcggtag aggccgtacg ccgcctgctc tgtcgcgtcc gagttgtagc cgaaggtgaa
     6001 gcggcggccc gcctgccccg gctcggtctg cgggaagacg atctcgcgca ccacactcac
     6061 gccggtcgca gtaagcgccc tctcgtgttg gcactcctcg cccacggacg cgtcccaacc
     6121 ccccgtcgtg taaaccttgc cccgcacggt cgtcgttccc atgttgacga ggacgctcat
     6181 ccacgcgccg cccgccactt ggtactcgac gcggaactgc ccttgcccgc cgccggccgc
     6241 cgggtcgtgg atcactttaa tctcccgccc ggtctgctcg tcctgatagt ggttggtgaa
     6301 ggaagccccg gattcggaga atatcttgat gctgttgccg ttattatcct tgacgcgctg
     6361 gacgccgtcc gcagtctgca cgacctgcgt gccgtcgggc ataaaaagcg tccagtcgtt
     6421 gacgccttta actatgaccg tcaggtatgt gccgtcgaac gagtaatacc ggacggggtt
     6481 ggtcgcgctc ggcaggaggt cgaagtaacc gcgcaggaag tcctgcgtgc cggagtaggg
     6541 ggcgtggcct tcggggcgca gttcgcgctc ggccccgtcg ggcgtgcgca agaccacctt
     6601 gtaccattca cgcaggagga gttggcgctc ccagtagggc agactgccgt cgggcggggg
     6661 tatctcgtag tcgaagtctt cgtgggcgtt gcggacggag agatggtaag cgccgccgac
     6721 tctccacccg ccgaggtcgc ttagctgcgg cgtatctacg gtgtagggct gccacgtcgc
     6781 gttaggtata taggcgtgct gggcgcgcgt cacgttccag agcttgctgt tgtaagtggc
     6841 gctcaccgtc caagagagct tgccgccggc gacgggcggc agtgaggcca gcgggatcga
     6901 gatgttcacg ttgccgctcg tgaggtttac gctctcgatg tcggagaccg agtaggccgc
     6961 gcccgacacc gcgccgcggt cggggcgggc cgcggtctgt ggcgacgact gtgcgaaagc
     7021 ccccgggcgc gcgagggcgc aaagcagggc cgcaaggagg aggcgacggg gcgaaacggt
     7081 gcgggcgctt ttcatgagga acctccagct actgcgcggg gccgttcgtg acgttcgtaa
     7141 gggtaagttc catgacgacc tgcccctcca gagaccagac cgtccgcgag ggccacagct
     7201 cgccgccatg atcgccccag ccggtaagct cggcgacgag ttgcccgccg cgccattcgg
     7261 agaccactct gccgaggagg ccggtggagg agtcgatgta gtagagccgc cacccgccct
     7321 cgggctcctg cccggcgacg cgcaccacgt cgtagagcgg gccggcgtag ccgtccccgc
     7381 cgccgtcgcc ggacagcctc actcctcggg ccacgacgta gtaactggcg ccgcgcagtt
     7441 gcgccagaac gaaccggtcg gggctgtcga gcgctatcct ctcgacgacg gcgcgatcct
     7501 catcagttat ctcgtggccc ggtgaggtgg cgccgcgttc ggcgtcccac acgagggtgt
     7561 cgcgattggc aaacgtgacc tctacgactt cgctatcgcc cgtctgttcg cgccgaacgc
     7621 gcgcgcggcg agcctcgtcg cccacgctga gcgtgcaggc aaagacggtc acttcacggc
     7681 cctcttcgcg gaacctgcgc ccgagcctgc ggctcatggc atgtgcggcg gggcttaagg
     7741 agaggttgcg gtggctcctc gcgctggcgg gcggctgttg cgagacgggc gccgccgccc
     7801 cggctgaggt ggcgcggcgg ccggcgcgaa gccccgcgac tgtcagggcc gcggcgcaca
     7861 ggccgagcgc gaagaagatt gcggtcgccg acgtggccgt ccggcaccgc cggagggcag
     7921 gcagttttac tctcatgggc ttcggccgcg gctgtgcgcc gtgatggtcg tggcgattac
     7981 gtgaggctaa cggaggtggc cggtagcttc cgagagcgag gccgagtggt gggatttggt
     8041 tgcgtgattt tggaggcggg cgaacgctac gcctcgccgc gcgccttgtc aacaaaaaaa
     8101 ttcgcgccgg cgcagaacag cttcactgag aacagaggac ttaagggggt tgtgcaacac
     8161 gcgcggcgct ctttctactc gacgacgcgc gcgacgacgc atttcaggta gagggtttcg
     8221 gggacgccga gcaggacggg gtggtcgctc gcctgcgtgc ggcgctcgac gagctgtgcg
     8281 cggcggcggg cgtcgcgggc ggcggaggcg attgtttcca ggaagagcgg ctcggtcatg
     8341 tggtaggagc aggtgcaggt tatgagagtg ccgccggggc gcagcagctt gagggcgcgc
     8401 aaatttatct ccttgtagcc gcgcgcggcc gcggggaggc ttgcgcggtt cttggcgaag
     8461 gcgggcgggt cgaggacgat tgtgtcgaac gaagcgcccg cggcctccat ctcgcgcaac
     8521 gcgtcgaaga cgttcgcctc gcggaactcg gcgttcgccg cgccgttcaa ttccgcgttg
     8581 cgtcgggccg aggcgacggc ctcggccgac acgtccaagc ccagcacgct ctcgcaagcc
     8641 ggcgcgacgc tcagcgcgaa gccgccgtgg aaggtgaagc agtcgagcgc gcggccccgc
     8701 gcccacgagc gcgcggccct gtggttctcg cgctggtcga ggaaggcgcc ggtcttctgc
     8761 ccgcctagcg gcgagacgag gagccgcacg ccgtgctggt ttatctctat ctcgcccggc
     8821 tccccgcccc agagcacgcc ggagcgaagc ggcagccctt cgagggagcg cacgcgcacg
     8881 tcgttgcgct cgacgatcgc gcgcggagcg aactcctcga ccagcagctc gactatggtc
     8941 gccttcagcg cctcagtccc ctgcgaaagg gtctggacga cgagcacgtc gccgtagcgg
     9001 tcaactatga gagagggcag caggtctcct tccgagtaga tgaggcggaa ggcgtcggcc
     9061 tcgcgcgcca ggccctcgcg gcgggcggcg gccgagcgca tgcgcgcgcg ccaccactcg
     9121 cgcccgacct cctcatcccc ggccgtcagc acgcgcaggg ctatctcgga gcggtcgctg
     9181 tagagcgcct gaccgagaaa gcgcccgcgc tcctcgcgca cgcgcactac cgcgccgccc
     9241 gccgcgccgc ccgcgtcgcg cacgtcactc cggtaaaccc acaggtggcc gccccgcgcc
     9301 cgctcggcgc ccttgcgcgt gattgtgact tcgggctggc ccatcggacg ggttcgaggc
     9361 tccggcttat cttgcgtact tgccgaagcg ggacatgaac tcgacggtgg tgaggccgcc
     9421 ggcctcggcg agcttggcga cccacgcgcc gtcgcggaag tctttgcggc cgaggcgcat
     9481 catgtagtcg cgcgccacct ggtagctctc tgtgcctacg tcaacgaagc gctggcggcc
     9541 gcggcccgtc gccgggtcga gcacgtcgga gaaggggacg gcctcgaact cgccgccctg
     9601 cgtggtgatc atcgagccgg agccgccggc cgagaggtgc ttgaaggcgg cgtagccgag
     9661 gtcgcgggcg tactcggcgt cgaagggtat gggcggcgcg cagcgcagct cgtagccgat
     9721 tgtcttgtca acgacggtcg ccttcacgcc ccggcgctcg agccgcgcct gaacctcgct
     9781 cttgaccttg cggccgaggt caatctcggc gacgcgtatg ttgccttgcg cgtcgcggtc
     9841 aacgtcctga agctcggcga cctccttcgg gtcgaagtgc tcgaccagcg cctcggagag
     9901 caggacgacg ccgtgcgggc gccccatcgc gcggcgcttg atgacggtgc cttctactat
     9961 gtcgcagatg tctgagagcg agacgcgggc gccgcccccg ccgaactcct cggggatgat
    10021 ggtgcaggtg gcgcccgccg ccttgcctat gccgagcgtg aggtggccgg tgggccgccc
    10081 catcgtcacg cccaagtacc agcgcgaagt cgtcttagcg tcctccatca ggcgcttgac
    10141 gagctcgacg ccgacgtggc gcgccgtctc gtagccgagc gtcgtgacgg gcaggggcag
    10201 ccagaggtcg ttgtctatgc tcttaggcac ctgcacgacg cgtatctcgc ccgcggtcgc
    10261 gcgctcgatc gccgccgagc ttttcacgag gtcgtcgccg cccacggtga cgagcgcctc
    10321 gatgccgagc ttcctcaagg cggcgaccgt gttgtcgagg ctctcggggt cgcgcgtgat
    10381 gtcgcggcgc gaggtgccca ggatcacgcc gccgtcaacg tgtatgcgcg acacctcgtc
    10441 aatcgtcatc tcgtgctgct cgtccgtgta gcgctgggcc agccactcga agccgtcgtg
    10501 gaaccccacg gccgcgcagc ccgccttgac ggcctcgatg acgacggccg agatgacgcc
    10561 gttcgtcccc ggcgccggcc cgccccccac cagaatcccg attcgtttga tcgccatagg
    10621 agttaaaggg gagtcaggag gagacgtggc cgctcatgta gccgaagcgg tcgcggaact
    10681 gctcttccga gaggttgccg gcctgcgcca tcttccgggc ccaggaggcg tcggcgaagt
    10741 ccccgggctc tagccttatc atgtactcgc gcgcgacgcg gtagccttcg ctcgcgacgt
    10801 tgaccatgcg gacgcgcgtc ctgcccgtcc ccggctcgcg tatgtccgcg aaagggatgg
    10861 ggatcatctt gccgccctgt atgcttatca tcgcctcgct gccgccggag gtgaggaagc
    10921 ggacggcgct gtagccgagg tcgcggcagt aggcggcgtc gaaagggatg gggtcggcgc
    10981 agcgcagctc gtagcctatg ttcttgttga tgatggtgac gcgcaggccc cgcccggcga
    11041 gccggccctg gacctctgcc ttcaccttgc gcgcgaggtc aacctcggcg aagcgtatgt
    11101 ggccgtgctc gtcgcgctct acgtcctgca attccgcaag ctcggccggg tcgagcttct
    11161 caatcagccc ctcggccagc accgccacgc cgaactggcg gcccaacgcg cgccgcttga
    11221 taatcgcgcc ctcgactatg tcgcagatgt ccgagaaggc gacggtctcg cgctcgaact
    11281 cctcgccgat gacggtgagg gtggcgcccg ccgccttgcc aatgccgagc gcgaggtggc
    11341 ccgccttccg gcccatcgcg acgactacga accagcgctt cgtagagcgc gcgtcctcca
    11401 tcaggttata gacgagctcg acgccgacgt ggcgggccgt ctggtagccg aaggtcggca
    11461 cgtgagcggg gagcggcaaa tcgttgtcaa tcgttttggg gacgtggacg acgcgaatct
    11521 ggtggccgga gcgctcggcg acgaaggagg aggagagcgc cgtgtcgtcg ccgccgatgg
    11581 tgactaagtg cgtgacgccg agcgagcgca gcgtctcgac gacggcgcgc gtggccttct
    11641 cggacttcgt cgggttgtcg cgcgccgtgc cgagcacgga gccgccgtcc aggtgtatgc
    11701 gcgacacgtc ctcgatgcgc agggggcgca ccttcgaggc gtcctcgcgt atgaggtgct
    11761 tgaagccgtc ctgcaccccg agcacctcga agccctcgtt ggccgcctcg atggccgcgg
    11821 ccgagatgac cgcgttgatg ccgggggcgg gccccccgcc gacgagtatc gccagcacgt
    11881 tcttcgtcgc cattcttctc ccgccagtct gaagctttcc ggtttccggg gattgtacat
    11941 aaaagcggag cgcgagcgcg agccgccgcc gtcttgaaat ccggcccctt tcagagtagc
    12001 cttgagcacg aagggataaa tcttagaaaa ctctcggagg tgaattcttt aatgcctgaa
    12061 gtcggggaca tggccccgga cttcgagctg ccaagccacc ttgccaaaga caagaaggtg
    12121 aggctctcgg atttccgcgg caagcagaac gtcgtattag ccttttaccc gctggcctgg
    12181 acgcccgttt gaacggccca gatgccggcc tacgaagcgg acctggatcg cttcaaaggc
    12241 tacgatgccc aggttctggg catctcggtc gactcggtgc cgtgcaacgc ggcgtgggct
    12301 aaatcgctag gcgggctctc ttacgaccta ctgtgcgact tccacccgaa gggcgaagtc
    12361 gccaaggcct acggcgcgtg gcgcgagaag gatggcattt ccgagcgcgc gctcttcatc
    12421 gtggacaagc agggcaaact cgcctacaag gacatacacg acataggcga ccagcccgac
    12481 aacgaggagc tcctcgacgt gctccgcaaa ctctaagggg gagatgacag atgccaggtg
    12541 ctgggtgtca gtcgggggct tctctttgac cgacacctag catctggcat ctgtcaacta
    12601 ttctttcatg ccactttcgc gcaagtgcgt gccgttcacg ccgttcgagg gcgagctggc
    12661 gcgctcgacg gtcgcaatcg tctcggccgg cggcgtgcac ctgcgggagc aggagccctt
    12721 caacaccgct gacgagctgg gcgacctgac cttccgcgtc atcccgcccg acgcgggcgc
    12781 gcccgagctt atggtctcgc accaccacta cgaccacacg gacgccgacc gggacatcaa
    12841 cgtcgtcttc cccctcgacg tgctgcgcga cctgagggag gagggctcca tacgggagct
    12901 tgcgcgcaag cacgtcggct acatgggcta caccatgcag ctcaaggcca tgtacgaagg
    12961 caccgcgccc gagatagcga acgagataga ccgcggctcg ggcgcagacg ccgtcgtgct
    13021 gacgggcggt tgaccgaacg tctgccaccg cacggtcgta gcggtacagc gcgagataga
    13081 gatgcgaggc ataccgacgg tgctcatcac cgtcagcccc gaggtatcgg cgcagatgcg
    13141 cccgccgcgc gccctctacc cgaagggctt ccgcgtaggc aacagcacgg gccggcccgg
    13201 catgcgcgag cttcagcgca aggtgctgcg cgacgcgctc tcgcttctga cggcagacac
    13261 ccggcccggc cgcgtcgtca cgattgaata ccccgagtac ggcgagcagt acgagccgcc
    13321 gaaggtgaag agcaagggat gagcgagggc gggcgccgca gccccccgcg gctgggatta
    13381 tgttgaagac aatcgggctg gtcacggggg gcggggacgc gccgggcctt aacgccgtca
    13441 taagggcggc ggtgaagacg gcggtgaacg agtacgggct gcgcgtcata ggcgtcgagg
    13501 acggctacga cgggctcctg ggcgagacct gcacgcgcgg gctgacggcg gccgacgtga
    13561 ggggcctgct cccgcgcggc gggactctct taggcacgcg caaccgcggc cgcttcgtcg
    13621 tgcgcgagaa gggcggcgtc agccacatgc cggaggaggt ctttcgagag gcaatcggga
    13681 acatgggccg gctcgggata gacgcgctcg tcgccatcgg cggcgaaggc acgctcgcca
    13741 tcgcgagcga gttccaccgc cacggcttcc ccgtcgtcgg cgtccccaag acgattgaca
    13801 acgacctcgc cgccaccgag ctgaccttcg gcttcatgac cgcgctcgac atcgcgaccg
    13861 aggcgctcga ccgcctgcac accacggccg agtcgcacga ccgcgtgatg gtcttggaag
    13921 tgatgggccg ccacgccggc tggatagcac tctacgcggg cgtgtcgggc ggggccgacg
    13981 tgatactcat ccccgagatc cccttctcga tggagaacgt ggccgagaag gttcgcgagc
    14041 gcgacggctg cggcgcccag ttcagcatca tcgtcgtcgc cgagggcgcg aaggaggtcg
    14101 agggcgagga ggtgtacgta gccgcgggcg accgccagag cgccccgcgc ctgggcggca
    14161 taggccaccg cgtcgccgaa gaggtcgcgc ggcggacggg caaggagtcg cgttgcgtcg
    14221 tgctgggcca cctccagcgc ggcgggagcc ccaacgcctt cgaccggctg ctcgccacca
    14281 gctacggctc ggccgccgtg cgcgcgctca tgagcggcga gcgcggcgtg atggtcgcgc
    14341 accaggccgc gaccgtccga acggtgccgc tggcagacgc ggttgctaac ataaagaccg
    14401 tgccgtccga cagccagata gttcgtacgg cgcgcgacgt gggcgcctcc ttcgccgcgc
    14461 ccgacgaggg gcggcagcac caacgctgct gaaaccgaca acggagaacc gaaccgacgt
    14521 gaccgaaggc ataaagcaga agctacagaa ggagctcgac gagctcgaca cggagctgcg
    14581 cgtccacctg ccgcgcgaga taaagcgggc aaaagagttc ggcgacctgc gcgagaacgc
    14641 cgagtaccac gccgcgctag cacgccagca gttcgtgcag gcgcgcatac gcgacctgcg
    14701 ccagcgcttg agtgaagtct catctattga cctctcgaaa atcccccgcg accgcatagc
    14761 ctacggctca acggtcgt
//
LOCUS       DASPKR010000030         2570 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_521382, whole genome shotgun sequence.
ACCESSION   DASPKR010000030 DASPKR010000000
VERSION     DASPKR010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2570)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_521382"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..745
                     /locus_tag="VD968_00810"
     CDS             <1..745
                     /locus_tag="VD968_00810"
                     /inference="COORDINATES: protein motif:HMM:NF025616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4349 domain-containing protein"
                     /protein_id="HYE12962.1"
                     /translation="GDSQAAPVPAERKIIRNANISLEVDDVPKAAQRVATVAEARGGF
                     VVTSESRQQSAADDSKTYEIVTVEVRVPAAQFDAAVGEIRAAGGRVIEEKVTGQDVTE
                     EYIDLEARIRTHRALEAQFLEIMKQARTVADALQVQRELANVRTDIERLEGRRRFLEN
                     QTSLSTIKVTLRPPTPFVSAGGFGRGIREAFGDGIDIAATITLGLIRVVIALIPVVVL
                     VFLPLGLLVRYAVRRIRRPQPPAGTEKLP"
     gene            838..1359
                     /locus_tag="VD968_00815"
     CDS             838..1359
                     /locus_tag="VD968_00815"
                     /inference="COORDINATES: protein motif:HMM:NF022853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD
                     domain-containing protein"
                     /protein_id="HYE12963.1"
                     /translation="MLLTLAACSGGTSNTSTTGGANAAPTPAAATASPPTQQSSPQIV
                     TATVEEARMPAGGEGEAVVRLDIAEGFHVNANPPSDEFYIGTEVKAAPQEGITPGKPV
                     YPPAIRKKFQFSKKELAVYEGQAVIRLPLRADTAAAKGRHTFRAQIRVQPCDDKECLP
                     PRTIEAYIPVMVN"
     gene            1385..1600
                     /locus_tag="VD968_00820"
     CDS             1385..1600
                     /locus_tag="VD968_00820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12964.1"
                     /translation="MSKDLKRQPWLWAAGLGLVAAAALALVGNFDGAFVAAALGVLAW
                     FLDVRARLRPRYDEGPHAAGEDDDERA"
     gene            1587..1790
                     /locus_tag="VD968_00825"
     CDS             1587..1790
                     /locus_tag="VD968_00825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12965.1"
                     /translation="MREPKRRRLLPYRVLVVVILGAVLALLLAAFSVTSPLSPRAVLL
                     LFAGVLLLLAAAVEVIFRDIKRG"
     gene            complement(1843..2118)
                     /locus_tag="VD968_00830"
     CDS             complement(1843..2118)
                     /locus_tag="VD968_00830"
                     /inference="COORDINATES: protein motif:HMM:TIGR01764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYE12966.1"
                     /translation="MKGEHNTKEEAREEFLTARQLAAVLQVSESTVRRLAREGRIPCV
                     RLTPRLLRFNLKSVCRALDGAQRKAGQRRAEEDDGRDDAQLTFAEMF"
BASE COUNT          425 a          916 c          830 g          399 t
ORIGIN      
        1 gggcgactcg caggccgcgc ccgtcccggc cgagcgcaag atcatacgca acgctaacat
       61 ctcgctcgaa gtggacgacg tgccgaaggc cgcgcagcgc gtcgccacgg tcgccgaggc
      121 gcgcggcggc ttcgtcgtca cctccgagtc gcgccagcag tcggccgccg acgactcgaa
      181 gacctatgag atagtcacag tcgaggtgcg cgtccccgcc gcgcagttcg acgcggccgt
      241 gggcgagata cgcgctgccg gcgggcgcgt catcgaggag aaggtcaccg ggcaggacgt
      301 caccgaggag tacattgacc tcgaagcgcg catacgcacg caccgcgcgc tcgaagcgca
      361 gttcctcgaa atcatgaagc aggcccgcac ggtcgccgac gccctgcaag tccagcgcga
      421 gctggcgaac gtccgcacgg atattgaaag gcttgaaggg cgccgccgct tcctcgaaaa
      481 ccagacgagc ctctcgacga taaaagtgac gctgcgcccg cccacgccct tcgtgagcgc
      541 cgggggcttc gggcgcggca tccgtgaagc gttcggcgac ggcatagaca tcgccgcgac
      601 gataaccctc gggctcattc gggtcgtcat cgcgctcatc cccgtcgtcg tactcgtatt
      661 cctgccgctc gggctgctcg tccgctacgc cgtgcgccgc attcgacggc cgcagccgcc
      721 cgcaggcact gagaagctac cctgaacctg ggcgagccgg ccgccttgtg acttacgccc
      781 cgagacttta gacttcagcg catgcgtcga aagattctcc cggccctctc aacggccatg
      841 ctcctgactt tggccgcgtg ctccggcggc acgtctaaca cgagcacgac gggcggggcg
      901 aacgccgcgc cgactcccgc cgccgcgacg gcatcgccgc ccacgcagca atcctcgccg
      961 cagattgtca cggccacggt cgaggaggcc cgcatgcccg cgggcggcga gggcgaggcc
     1021 gtcgtgcggc tcgacatagc cgaaggcttc cacgtcaacg ccaacccgcc ctccgacgag
     1081 ttctacatcg ggacagaggt caaggcggcg ccgcaggagg gcatcacgcc gggcaagccc
     1141 gtctatcccc cggcaatcag gaagaagttc cagttctcaa agaaggagct ggccgtctat
     1201 gaggggcagg ccgtcatacg actacctttg cgcgccgaca cggccgccgc gaagggccgc
     1261 cacaccttcc gcgcgcagat acgcgtgcag ccctgcgacg acaaggagtg cctgccgccg
     1321 cgcaccatag aggcttacat cccggtcatg gtcaactgaa gtcttaggcg gagcgcgtaa
     1381 aggtttgagt aaggacttaa aaaggcagcc gtggctttgg gccgcggggc tcgggctcgt
     1441 cgccgccgcg gcgcttgcgc tcgtgggcaa cttcgacggc gcgttcgtcg ccgccgcgct
     1501 cggcgtgctc gcgtggttcc tggacgtccg cgcgcggctc cggccgcggt acgacgaagg
     1561 cccgcacgcg gccggcgagg atgacgatga gagagcctaa gcgccgacgc ctgctcccct
     1621 accgcgtgct cgtcgtcgtc atactcggcg ccgtgctcgc gctcctgctc gcggccttct
     1681 ccgtcacctc gccgctctcc ccgcgggcag tgctgctact gtttgcgggc gtcctgctgc
     1741 tgctcgccgc cgccgtcgag gtaatcttcc gcgacataaa aagaggctag ggccggcaga
     1801 aatcttctgc cggcccccag ccccgagcac cgccactctg gcctaaaaca tttccgcgaa
     1861 ggtgagttgc gcgtcgtccc tcccgtcgtc ctcttcggcg cggcgctggc ctgccttccg
     1921 ttgcgcgccg tcgagggcgc ggcagaccga cttaaggttg aagcgcagca ggcggggcgt
     1981 cagccgcacg cagggtattc gcccctcgcg cgcgaggcgg cgcacggttg actcgctcac
     2041 ctgaagtacg gcggcgagct ggcgcgccgt aaggaactct tcgcgcgcct cttccttcgt
     2101 gttgtgctcg cccttcaact ctttccgcct acttgtcttc gggacttaac cgctcgaacg
     2161 ggcgagggga gcgacgcgga ttatactcga cacaggcgcg cccccgccac ctcctcccgc
     2221 cgggcgggca tcctgcctgc gcgccgggcg catcaatccg tggccgcgcc tcctatcgcc
     2281 gggcgggcgg cgtgttataa tccgggccgc ttaaaagccg cgccgcctgc ctcccccaag
     2341 ccggccgaaa ccgaaagacc caagaactaa atgtcactga gctttaaata tctattcgga
     2401 gccgtcgtca tttccatgct cgtcgtggtg cccgcccccg ccgcggcgca gaaggtgaag
     2461 gagacgacgg gcgcgataaa ggggcgcgtg cgcgtggacg cgggcgccga cccctcggac
     2521 ataaaagtcg tgctgcggca gggcgagcgc gaggtggcgc acgccacgac
//
LOCUS       DASPKR010000031         7938 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_780415, whole genome shotgun sequence.
ACCESSION   DASPKR010000031 DASPKR010000000
VERSION     DASPKR010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7938)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7938
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_780415"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3549)
                     /locus_tag="VD968_00835"
     CDS             complement(<1..3549)
                     /locus_tag="VD968_00835"
                     /inference="COORDINATES: protein motif:HMM:NF016450.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12967.1"
                     /translation="MSANPVQNPLQKSAVGSGRRTSQPPARHDFSKIKTAVRIPNLIE
                     IQRDSYNRFLQMDLLPEEREPTGLQAVFRSVFPIADFRQTAELDFVEYHIGNWQCKCG
                     RLEGLRYLRANCKQCGSLVKVDPLVPGETLCHNCGTFNAVRPTLCDNCGEPVGLKHKH
                     DQQECQERGMTYSVPLKVKIRLTVYDKDPETETRSIRDIKEEEVFFGEIPLMTDNGTF
                     IINGTERVIVSQLHRSPGVFFEKAPVYLAKVIPYRGSWVEFEYDQKNLLYVRIDRKRK
                     FLASIFLRALGIWLNPQFESKSFGSDSQLEDAVKNAAFNDEDILRAFYISDDVRVEEG
                     RLFVRVREDGATNLVGMKAEHDLKGRGSSEPIVKAGKKVTASALRDLRKAHVPEVEVD
                     SQQFDGAYALADVVNTETGEVIVEANNEISPAKLQEIIESGVTELTVFFPERDDLGNV
                     LAQTLKKDVITKPVDALLEIYRKMRPGDPPTVQTAYKLFEGMFFDERKFDLSRVGRLK
                     FNIKMGREERDRIDDPLLSAGDFVQVISYLLKMRRNPVEYLADDIDHLGNRRVRAVGE
                     LLENQFRIGLVRMERAIKEKMSIQQEMQTTMPRDLINAKPVTAAVREFFGSSQLSQFM
                     DQTNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIS
                     SLSCFARINEFGFIESPYRKVVEGRVVEYVRVTNGGDTKLKPGDHVQEDEVTKANRRV
                     GADGRKAQYEPYPFYLTAWVEDKHVIGQANIELDEEGRIVNERNAARKAGEFMTAHRD
                     EIEYVDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQSVPLLRAESPYIGTGMEQ
                     VTARDSGAVVAARRDGIVDYVDSERIIVRADHNVDGTISREVTADIYTLTKFKRSNQN
                     TCINQRPIVQIGERISKGQVIADGPCTDRGELALGRNVLVAFMPWRGYNFEDAILVSE
                     RLVKDDYYTSIHIEELEIEARDTKLGPEEITRDIPNVGENMLRDLDDSGIIRIGAQVK
                     PGSILVGKVTPKGETQLTAEEKLLRAIFGEKAGDVKDASLQCPPGIDGTVVDVQVFTR
                     KGTERDARSLAIEQEEEERLRRDLEDEIRILREQRDARIHELFEGRKLAADLTVDREV
                     RIAKGETITREMLQGIEPKALRKAQLTTTRVDVAAEV"
     gene            complement(3882..4271)
                     /gene="rplL"
                     /locus_tag="VD968_00840"
     CDS             complement(3882..4271)
                     /gene="rplL"
                     /locus_tag="VD968_00840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HYE12968.1"
                     /translation="MAISNQEIVDALKEKSLLEAAELVRMIEEAFGVSAAAAAVAAAP
                     AAGGGGGEAAAPAEEKTEFDVVLQAAGGNKINVIKVVREITALGLKEAKDLVESAPKA
                     VKEGVSKEEAEAIRAKLADAGATVEVK"
     gene            complement(4487..4972)
                     /gene="rplJ"
                     /locus_tag="VD968_00845"
                     /pseudo
     CDS             complement(4487..4972)
                     /gene="rplJ"
                     /locus_tag="VD968_00845"
                     /inference="COORDINATES: protein motif:HMM:NF000955.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
     gene            complement(5045..5740)
                     /gene="rplA"
                     /locus_tag="VD968_00850"
     CDS             complement(5045..5740)
                     /gene="rplA"
                     /locus_tag="VD968_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009880170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HYE12969.1"
                     /translation="MPKQGKKYRAAFEKVEAGRKYTLEEGLAKVKEIAFAKFDETVEL
                     TMWLGVDPRKADQLVRGTVVLPHGLGKSKRVLVITQGDKVREAEEAGADFVGGEDMVD
                     RIKGGWLDFDAVIATPDMMRFVGQLGKVLGPRGLMPNPKTGTVTPDVATAVRETKAGK
                     VEYRVDKTGVIHVGIGKVSFDQDRLRENAQVLLDAVVKAKPSTAKGKYVKKVNLASTM
                     SPGVLLDETVYAR"
     gene            complement(5813..6238)
                     /gene="rplK"
                     /locus_tag="VD968_00855"
     CDS             complement(5813..6238)
                     /gene="rplK"
                     /locus_tag="VD968_00855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006676477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HYE12970.1"
                     /translation="MAKKITGYIKLQVPAGKANPAPPIGPALGQHGVNIMEFCKAFNA
                     KTAQMDPDLKVPVVITVYADRSFTFETKTPPAADLLKKAAGIAKGSGKPNREKVGSIS
                     RDKIEEIARLKMPDLNTSSLEAAVKTIEGTARNMGLNIE"
     gene            complement(6255..6815)
                     /gene="nusG"
                     /locus_tag="VD968_00860"
     CDS             complement(6255..6815)
                     /gene="nusG"
                     /locus_tag="VD968_00860"
                     /inference="COORDINATES: protein motif:HMM:TIGR00922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HYE12971.1"
                     /translation="MQQWFILHTYSGHEKKVRDSLKARIRDTELQNEITEVLVPTETV
                     VEMRGNKRVESSRMFYPGYVLVQIECDDRGHIPDNVFHLIKSTPKVTGFVGGQQPTPL
                     TPDEVNQIVHNVTEAAEKPKPKFTYAQGETVRIKSGPFASFTGKVEDVNSDKSTLKVV
                     VTIFGRSTPVELNFLDVEKVTFTEDE"
     gene            complement(6837..7208)
                     /gene="secE"
                     /locus_tag="VD968_00865"
     CDS             complement(6837..7208)
                     /gene="secE"
                     /locus_tag="VD968_00865"
                     /inference="COORDINATES: protein motif:HMM:NF012793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HYE12972.1"
                     /translation="MSKKEGEQMTANGHDEEEPEGSPGAESGGAAPRMARYGEGPEGR
                     AARRERGLKDEPRDGALARAGKFLRDIRAELGRVTWPTAIQVRNTTIITVVAVIFFAI
                     YLFAVDRIFAFVIDLFHGWLG"
     gene            complement(7246..7318)
                     /locus_tag="VD968_00870"
     tRNA            complement(7246..7318)
                     /locus_tag="VD968_00870"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7282..7284),aa:Trp,seq:cca)
     gene            complement(7371..7523)
                     /gene="rpmG"
                     /locus_tag="VD968_00875"
     CDS             complement(7371..7523)
                     /gene="rpmG"
                     /locus_tag="VD968_00875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005918839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HYE12973.1"
                     /translation="MPRDNITLQCTECKSRNYVTTKNKKTTPERLEFRKFCRRCRQHT
                     GHKETK"
     gene            complement(7581..>7938)
                     /gene="tuf"
                     /locus_tag="VD968_00880"
     CDS             complement(7581..>7938)
                     /gene="tuf"
                     /locus_tag="VD968_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003640798.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HYE12974.1"
                     /translation="LLLRGVERRDIERGQVIAKPGSITPHTKFRAEAYILTKEEGGRH
                     TPFFTGYRPQFYFRTTDVTGVAKLPEGVEMVMPGDNVAMEIELITPIAMEKGLRFAIR
                     EGGRTVGAGTISDIVE"
BASE COUNT         1217 a         2586 c         2488 g         1647 t
ORIGIN      
        1 gacctcggcc gccacgtcca cgcgcgtggt cgtcagctgc gccttgcgca gggccttcgg
       61 ctcgatgcct tgcagcatct cgcgcgtgat ggtctcgccc ttcgcgatgc ggacttcgcg
      121 atcaacggtc aggtcggccg caagcttgcg gccctcgaac agctcgtgga tgcgcgcgtc
      181 gcgctgctcg cggaggatgc ggatttcgtc ctccaggtcg cggcgcaggc gctcctcctc
      241 ttcctgctcg atggcgagcg agcgggcgtc gcgctccgtg cccttgcggg tgaagacctg
      301 cacgtcaacg accgtcccgt caatgccggg cgggcactgc aaggaggcgt ccttcacgtc
      361 gccggccttc tcgccgaaga tggcgcgcag cagtttctcc tcggcggtca actgcgtctc
      421 gcccttcggc gtcaccttgc cgacgaggat ggagccgggc ttgacctgcg cgccgatgcg
      481 gatgatgccg ctgtcgtcga ggtcgcggag catgttctcg ccgacgttcg ggatgtcgcg
      541 cgttatctcc tcggggccga gcttcgtgtc gcgggcctcg atctcgagct cctcgatgtg
      601 tatggacgtg tagtagtcgt ccttcacgag ccgctcggag actaggattg cgtcctcgaa
      661 gttgtagccg cgccacggca tgaatgcgac gaggacgttg cggcccagcg caagctcccc
      721 gcgatccgtg caggggccgt ctgctatgac ctgacccttc gagatgcgct cgcctatctg
      781 gacgatgggg cgctggttga tgcaggtgtt ctggttcgag cgtttgaatt tggtgagcgt
      841 gtagatgtcg gccgtcacct cgcgcgagat ggtaccgtca acgttgtggt cggcgcgcac
      901 gatgatgcgc tccgagtcaa cgtagtcaac gatgccgtcg cggcgcgcgg cgacgacggc
      961 gccggaatcc ctcgccgtca cctgctccat gcctgtgccg atgtagggcg actcggcgcg
     1021 cagcagaggc accgactggc gctgcatgtt cgagcccatt agcgcgcggt tcgcgtcgtc
     1081 gttctcgagg aacgggatga gcgaggccgc gaccgagacg agctgcttcg gggagacgtc
     1141 cacgtactct atctcgtcgc ggtgggccgt catgaactcg ccggccttcc gtgcggcgtt
     1201 gcgctcgttg actatgcggc cttcctcgtc gagctcgatg ttggcctgcc cgatgacgtg
     1261 cttgtcctcg acccaggcgg tcaggtagaa cgggtagggc tcatactggg ccttgcggcc
     1321 gtctgcgccg acgcggcggt tcgccttggt gacctcgtcc tcctggacgt gatcgcccgg
     1381 cttgagcttc gtgtcgccgc cgttcgtgac gcggacgtac tcgacgacgc gcccctcgac
     1441 gaccttcctg taaggcgact cgatgaagcc gaactcgttg atgcgcgcga agcacgagag
     1501 cgacgagatg aggccgatgt tcggcccctc aggcgtctca atcgggcaga tgcggccgta
     1561 gtgcgtgggg tgcacgtctc tgacttcgaa cccggcgcgc tcgcgcgaaa gtccgcccgg
     1621 cccgagggcc gagagcctcc gcttgtgcgt tatctcggag agcgggttcg tctgatccat
     1681 gaactgcgag agctgagacg agccgaagaa ctcgcgcacc gcggccgtca ccggcttcgc
     1741 gttgatgagg tcgcgcggca tcgtcgtctg catctcctgc tggatggaca tcttctcctt
     1801 aatcgcccgc tccatcctga ccaagccgat gcggaactgg ttctctaaca gctcgcccac
     1861 ggcgcgaacc cttcggttgc cgaggtggtc aatgtcgtcg gcgaggtact cgacggggtt
     1921 gcggcgcatc ttcaggaggt aggagatgac ctgcacgaag tcgccggccg aaaggagcgg
     1981 gtcgtcaatg cggtcgcgct cctcgcgccc catcttgatg ttgaacttca ggcggccgac
     2041 gcgcgagagg tcgaacttgc gctcgtcgaa gaacatgccc tcgaagagct tgtaggcagt
     2101 ctgcacggtc ggcgggtcgc cggggcgcat cttgcggtaa atctccagaa gcgcgtccac
     2161 cggcttcgtt atcacgtcct tcttcagggt ctgcgcgagg acgttgccga ggtcgtcgcg
     2221 ctcggggaag aagacggtca gttcggtcac gcccgactcg attatttcct gcaacttcgc
     2281 cgggcttatc tcgttgttgg cctcgacgat gacctcgccc gtctctgtgt tcacgacgtc
     2341 tgcgagcgcg taggcgccgt cgaactgctg cgagtcaacc tctacctccg ggacgtgcgc
     2401 cttgcgcagg tctcggaggg ccgaggcggt gaccttcttg ccggccttca cgatcggctc
     2461 cgaggagccg cggcccttga ggtcgtgctc ggccttcatg ccgacgaggt tggtcgcgcc
     2521 gtcctcgcgc acgcgcacga agaggcgccc ctcctcgacg cgcacgtcgt ccgagatgta
     2581 gaaggcgcgc agtatgtcct cgtcgttgaa ggcggcgttc ttgacggcgt cttcgagctg
     2641 cgagtcggag ccgaacgact tcgactcgaa ctgcgggttg agccaaatcc ctaaggcgcg
     2701 caggaatatc gaggccagga acttgcgctt gcggtcaatg cggacgtaga gcaggttctt
     2761 ctggtcgtac tcgaactcga cccacgagcc gcggtaaggg atgaccttcg ccagatagac
     2821 cggcgccttc tcgaagaaga cgccgggcga gcggtgtagc tgcgagacga tgacgcgctc
     2881 ggtcccgttg atgatgaagg tgccgttgtc cgtcatcagc ggaatctcgc cgaagaagac
     2941 ctcctcctcc ttgatgtcgc gtatggagcg cgtctcggtc tccgggtctt tgtcatagac
     3001 ggtgaggcgg attttgacct tgagcggcac ggagtaggtc atgccgcgct cctggcactc
     3061 ctgctggtcg tgcttgtgct tgaggccgac gggctcgccg cagttgtcgc agagcgtggg
     3121 ccgcacggcg ttgaacgtgc cgcagttgtg gcagagcgtc tcgccgggga cgagcgggtc
     3181 aaccttaacg agcgagccgc actgcttgca gttggcgcga aggtagcgca gcccctctag
     3241 acggccgcac ttacactgcc agttgcctat gtggtactcg acgaagtcga gctcggccgt
     3301 ctggcggaag tcggctatgg ggaagaccga gcggaagacg gcctgcaacc ccgtgggctc
     3361 gcgctcctcc gggagcaagt ccatctgcag gaagcggttg taggagtcgc gctgaatctc
     3421 tatgaggttc gggatgcgca ccgccgtctt gatcttcgag aagtcgtggc gggcgggcgg
     3481 ctggctcgtg cggcggcccg agccgacggc gctcttctgg agcgggttct gaaccgggtt
     3541 tgcggacatc ggagattcct taaatagctt tcggctatca gcagtcagcc gtcagctaat
     3601 atttattaaa gaggactgtt caaggccgcc cagcaacaac ctgctgacca ctgattgctg
     3661 aacgccgaaa gcttctttta aagacgccaa agcgcggcca gagcgcacga gtctctgacc
     3721 gcttctttcg gcggtaaact tgcttccgag ttgttgggag taagacagcg ccccaatact
     3781 cccctacctt agccgcgcgg cggccgacct gtcaagacag gttccgggcg ccggcgccgg
     3841 gctcgcctta aacgaaaccc ggcggccggc gccttgcaca cttacttcac ttcgacggtc
     3901 gcgccggcgt cggccagctt ggcgcggatg gcctctgcct cttccttcga gacgccttcc
     3961 ttgacggcct tcggcgcgct ctcgacgagg tctttggcct ccttcaggcc gagcgccgtt
     4021 atctcgcgga cgaccttgat gacgttgatc ttgttgccgc cagcggcctg aagtacgacg
     4081 tcgaactcgg tcttctcctc ggcgggcgcg gcggcctcgc cgccaccgcc gcctgccgcg
     4141 ggcgcggccg ccacggcagc cgcggccgcc gagacgccga acgcctcctc tatcatcctg
     4201 accagctcag ccgcctcaag aagactcttc tccttaaggg cgtcaacgat ttcctgattc
     4261 gagattgcca tgattacctc taatcctcct caaaagggtt ctagtgttgc tgtccttgtc
     4321 tgtgattcgc agcaggagaa cccacggggc gcgctgctct ggcccgttgc atcgcgggcc
     4381 tcgcggcgcg cccgaggcgg acgacctgac aaatcgtcgc gcccgtttta ccgcgtccgg
     4441 ctgactccaa tgagatttca aatttgaaat ctcaaatttc aaattcctaa gaggcggcct
     4501 cgccgccctt ctgctcgccc gcctgtcgga tgacgacggc gaggtttcgc ggcaccgccg
     4561 agatgacggt ggcgaggcgc tgcgcctgcg cgttgatgag gaacatgatc ttcgagacca
     4621 tgacctcctt cggcgggagc gtcgccaggg cctccacgtc cctgagcgcg atgacacggc
     4681 cctcgacgac gccggccttg aagctgaaca cctcggggtt gtccttggcg aacttcgaga
     4741 tggccttcga caattgcacg gggtcgccct cggcgagcgc cacggccgtc acgcccttga
     4801 agtgctcgac cgccgcctcg aagggagtgc cttctgcggc cctacgcgcc agagtgttct
     4861 tgacgaccga gtagctcgcg cccgcctcgc gcaggtggcg gcgcagctcc tgatccttgg
     4921 cgacggacat cttcttgaag cccacgagca tggcggtcgt ggccgcctgg aactgctgcg
     4981 agagggccta gaggtctttc tgcttctgtt ccctagtctt cataatagtc ccctgctccc
     5041 cctcttatct cgcgtaaacc gtctcgtcca ggagcacgcc ggggctcatc gtcgaggcga
     5101 ggttgacctt cttcacgtac ttgcccttcg cggtcgaggg cttggccttc acgaccgcgt
     5161 ccaggagcac ctgcgcgttc tcgcgcagcc tgtcctggtc gaaagagacc ttgccgatgc
     5221 cgacgtgtat gacgcccgtc ttgtcaacgc ggtactcgac cttgcccgcc ttcgtctcgc
     5281 gcacggccgt cgcgacgtcg ggagtgacgg tgccggtctt cgggttgggc atcaggccgc
     5341 gggggccgag caccttaccc aactggccga cgaagcgcat catgtcgggc gtggcgatga
     5401 cggcgtcgaa gtcgagccag ccgcccttaa tacggtcaac catgtcctcg ccgccgacga
     5461 agtccgcccc ggcctcctcg gcctcgcgaa ccttgtcgcc ctgagtgatg acgagcacgc
     5521 gcttcgactt gccgagcccg tgcggcagca cgacggtgcc gcgaaccaac tggtcggcct
     5581 tgcgcgggtc aacgcccagc cacatcgtca gctcgaccgt ctcgtcgaac ttagcgaagg
     5641 caatctcctt gaccttcgcg agcccctctt cgagggtgta cttcctgccc gcctcgacct
     5701 tctcgaaggc cgcgcggtac ttcttaccct gcttaggcat tatcttgtct ccgaggttca
     5761 agcgaagcgg ttcgcgcttc tccctctcag gaacgtgcgg cgcggcggcc gcctattcga
     5821 tgttgagccc catgttgcgg gcggtgcctt cgatggtctt gacggccgcc tcgaggctgc
     5881 tggtgttgag gtcgggcatc ttgaggcgcg ctatctcctc gatcttgtcg cgcgagatgg
     5941 agccgacctt ctcgcggttc ggcttgcccg agcccttcgc tatccccgcg gccttcttca
     6001 ggaggtctgc cgccgggggc gtcttcgtct cgaaggtgaa ggagcggtcg gcatagacgg
     6061 tgatgacgac cgggactttc aagtccgggt ccatctgggc cgtcttggcg ttgaacgcct
     6121 tgcagaactc catgatgttg acgccgtgct ggccgagcgc tggccctatc ggcggggccg
     6181 ggttggcctt gcccgccggc acctgcaact ttatgtaacc cgtaatcttc tttgccatga
     6241 tgtttaatag ccagttattc gtcttcggtg aaagtgacct tctccacgtc aaggaagttt
     6301 agctcgaccg gcgtcgagcg cccgaagatg gtgacgacga ccttgagcgt tgacttgtcg
     6361 gagttcacgt cctcgacctt gccggtgaac gatgcgaacg ggccggactt tatcctcacc
     6421 gtctcgccct gagcgtaggt gaacttcggc ttcggcttct cggccgcctc cgtcacgttg
     6481 tggactatct ggttcacctc gtcgggcgtc aaaggcgtcg gctgctgccc gccgacgaag
     6541 cccgtcacct tcggcgttga ctttatgagg tggaagacgt tgtcgggtat gtggccgcgg
     6601 tcgtcgcact ctatctgcac gagcacgtag ccggggtaga acatgcgcga cgactcgacg
     6661 cgcttgttgc cgcgcatctc gaccaccgtc tcggtcggca cgagcacctc ggttatctcg
     6721 ttctgtagct cggtgtcgcg tatgcgcgcc ttcagcgagt cgcgcacctt cttctcatgc
     6781 cccgagtagg tgtgaagtat gaaccactgc tgcataactt aaagcttccc cggcccttaa
     6841 cctagccacc cgtggaaaag gtcaatcacg aaggcgaaaa tgcggtcaac ggcgaacaga
     6901 tagatggcga agaatatgac ggcaacgacc gtgattatcg tggtgttcct gacctgaatg
     6961 gcggtcggcc acgtcacgcg gcccagctcg gcgcgtatgt cgcgcaggaa cttgcccgcg
     7021 cgcgccagag cgccgtcgcg cggctcatcc ttcagcccgc gctcgcgccg cgccgcgcgc
     7081 ccctccggcc cctcgccgta gcgcgccatg cggggggcgg cgccgcccga ctccgcgccc
     7141 ggcgagccct ccggctcctc ctcgtcgtgg ccgttcgcag tcatctgttc gccctctttc
     7201 ttcgacaccg acctttcctc tcgactcaat ctgcccgggg cccaacaggg gtatcaggat
     7261 tcgaacccga actttcggtt ttggagaccg acgtgctaac cgttgacact ataccccttc
     7321 agagaaattg aagactggcg cggggcttcg tcgcccccgc gccgcgtcgc tcacttcgtc
     7381 tctttgtggc cggtgtgctg gcggcagcgg cggcagaact tcctgaactc caggcgctcg
     7441 ggcgtcgtct tcttgttctt cgtcgtcacg tagttgcggc tcttgcactc tgtgcactgc
     7501 aacgtaatgt tatcgcgtgg cataacttaa accttctgtc gctgactaag cttaaaacct
     7561 ctcggccgcg gcgcgggggg ctactcgacg atgtctgata tggtgccggc ccccaccgtc
     7621 ctgcccccct cgcggatggc gaagcgcagc cccttctcca tcgctatcgg cgttatcagc
     7681 tctatctcca tggcgacgtt gtcgcccggc atcaccatct cgacgccctc cggcagcttc
     7741 gccacccccg tcacgtccgt ggtgcggaag tagaactgcg gcctgtagcc cgtgaagaac
     7801 ggcgtgtggc ggcccccctc ctccttcgtc agtatgtagg cctcggcccg gaacttcgtg
     7861 tgcggcgtta tactgccggg cttggctatg acctgccccc gctcgatgtc ccggcgctcg
     7921 acgcccctca gcagcagc
//
LOCUS       DASPKR010000032        11240 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1168815, whole genome shotgun sequence.
ACCESSION   DASPKR010000032 DASPKR010000000
VERSION     DASPKR010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11240)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11240
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1168815"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1003
                     /locus_tag="VD968_00885"
     CDS             <1..1003
                     /locus_tag="VD968_00885"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE12975.1"
                     /translation="AVEPAKEKGKGNGFVRALTAPFRALAKLFGSRKKSDAAKKREEK
                     AQPKQAGVVEAAVVGTAPETVKAPEAAPKPEEAQPSAPAAAPTVAKTAPTAGGARIVR
                     PGENGVVEAAKPKMWVPVIGGIPKDPLSQGRALLQHGYVQEAISELSIAASRPGPEIV
                     EANNLLGLAYDRMGWHLQAIECYKRALSVKPNDAVIIANLGYSLYLAEDRHGALKRLK
                     QAARLSPSTPVIHNNLGIVQARMGRYGDALKSFTRASNEYDAHVKLAGILELERRDRD
                     AAKHYEAALKLQPGTSALLERLVAIYERTGERNKAETARRALGQPQNPQRTATGGGG"
     gene            complement(1090..2505)
                     /locus_tag="VD968_00890"
     CDS             complement(1090..2505)
                     /locus_tag="VD968_00890"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE12976.1"
                     /translation="MSQQNTQPARILVAEDEANLRLVIQKELQRMGHEVKAAPDGEAA
                     LKLLEESNVDVLLTDISMPRMDGMELLRRVHERPNPPEVIMLTGHATVESAIEAMKLG
                     AYDYLSKPYRIAELDALVKQAAEKRRLRVDNARLRTLVERRTAAPEIVFVSEAMREVM
                     RLVERVAPSDASVLITGESGTGKELVANAIHRLSPRGESSFIDLNCAAFQESLLESEL
                     FGYEAGAFSGAKGRKLGLWELADNGTIFLDEVTELPPQLQSKLLRAIETNSFYRVGAV
                     RKVQVNVRIVAATNRDINEVVADGRFRADLLYRVNGFQISLPALRERPEDVEPLAQHI
                     LKRLGGAQSPELTPEALAALKSYHWPGNVRQLRNTLERAVLLSNDGRITTAELPPEIA
                     APATAFRPAAVSAAAATPGAAAATGAPGVPPPLREVERQQILAALEQTGWHRGKTAEI
                     LGISPSTLYRRLRDYNLTKRQ"
     gene            complement(2502..4568)
                     /locus_tag="VD968_00895"
     CDS             complement(2502..4568)
                     /locus_tag="VD968_00895"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE12977.1"
                     /translation="MSATPSVSEKTATLLVVEDDERARRSLQRTFESEGHRVVACADA
                     AAALRELHRQPCDLVVLDIELPGVSGLALCRLLRAQAATRRLPVIIVSSHDREEYKVE
                     AFAAGADDFVVKGPTARELVTRVGSHLDAAERERALEGSNRELAFLADLGRGLLHAMT
                     GAEVVRRVAGATYEGADAALCAAVLAEPGREDLTLCVFDREGSAEEEAGLLDAARLRA
                     WLATSPAASRRTGDPAEFFLKDERHAVEYAAPLRFEGRALGALVVGFDRAGDCGQTEE
                     RLVDAAAQQASLAARISSLYAAARSASAHLAREVERRTAEAESQRRFTEAIIDSLPVS
                     LYAVDRNYRVVAWNRNRELGGQGIPRRDVLGRNVFEVLTRQPREAMEREFERAFRTGE
                     MERIEQEGQGPDGSTRHWLVSKVPMRIDGEDVSHVITVGEDITERVAAGRAVARSEKL
                     AAVGRLAAGVVHEINNPLATISACAEALETRVAEGVFGSGADVEDLREYLQLIRGEAF
                     RCKQITNGLLEFSRARAVQHAPVNVSEVVESAARLLLHQKRGAAVRIDVELAGGLPFV
                     SGDEGQLQQAVIILAENAVDAMPDGGTLTLSTRLDAEAGDGGGVVIEVRDTGSGIPAE
                     IRERIFDPFFTTKEVGRGTGLGLAVCYGIVTEHGGRVGVDSTPGRGSVFTIHLPATPS
                     DGDRAA"
     gene            complement(4811..7357)
                     /locus_tag="VD968_00900"
     CDS             complement(4811..7357)
                     /locus_tag="VD968_00900"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HYE12978.1"
                     /translation="MILTGMADYNRPSRAYWLAVVSAGAAALAWALHRCLSLDAAAWA
                     QLLALVSLALVSGARPFRVPGTKSSVTAGDCFTFLAVIFLGVPAGVLAGAVDSLAGSL
                     RTSRRAPGRLAAPACAAVAVFVAGNLFYLVLAARGAVTRNPLGAREPVALEQLALPLA
                     LMALAQFTLSGLLGAALVALKSRRGAWRCWRDGYLWSPLTSFGCAFAALLAYGAIMKF
                     GLLYVALGVPVVAAALATYRTYFERVAEKTREAAELSRIHLATVEALATAIDAKDQTT
                     HCHVRRVQIYCARMGELMGLTPGEIKALKAGALLHDVGKLAVPDHILNKPGKLTEAEF
                     ERMKIHTSVGAQILERVGFPYPVVPIVRSHHERWDGRGYPDGLKGEEIPLTARILSVV
                     DCFDSVREERPWRRGMTHDEACALVRRGAGTHFDPCVVAVFLNHLPEFEREIAEQELG
                     HRGLTHAEFDARELLGENQQGAEAPLPPHMHTTDDPSTPDYLNQISNAHREVYALYEI
                     ARTFGSSLDIEDTMSVLVNKVGHVVPFELCVVYLLDELKGYATAAHVAGRHSELLRGR
                     AVAPGEGVVGFVLANRRPSYLLDPMLDFREVPLPEGFAFRSMVALPLSKGERTLGALA
                     VYSTEPRRYTDDHLRLLDTVARLASDALSNAMHHAETKSNAMTDTLTGLPNARAMYVR
                     FEQEASRARRTGRPFQVVMLDLDDFKQVNDTFGHKTGDRVLREVARILQAQLRDYDFL
                     ARYAGDEFVAILQDLTAEQVRELCERIERAVSRFSLHVRGDKHARVGISVGAAFYGAH
                     GETLDQLLIAADEAMYAVKSGHKRLARAGDAREDKPLALDAGDLASTAIN"
     gene            complement(7354..7566)
                     /locus_tag="VD968_00905"
     CDS             complement(7354..7566)
                     /locus_tag="VD968_00905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12979.1"
                     /translation="MITAPRSFSDSFAPLREIRSHAEPRADDAQTRPPAGEPCLAREE
                     SKRDGDDPQPATYNPQPATEPDGGRA"
     gene            8108..10498
                     /locus_tag="VD968_00910"
     CDS             8108..10498
                     /locus_tag="VD968_00910"
                     /inference="COORDINATES: protein motif:HMM:NF015148.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HYE12980.1"
                     /translation="MPTDSVDPARAAEAMEFPDRAGWRPDNPFLAAFRPFIPAAARLR
                     ELTPLPLIVGTLLGVIFGASSLYLVLKVGLTVSASIPVAVISITFFRILSKIGLRDAT
                     ILENNIVQTAGSAGESIAFGLGVTMPAIMILGFDLELTRVMLVAVLGGLLGILMMIPL
                     RRALIVQQHGILKYPEGTACAEVLKAGASRESLDAAHTDEASARVADEATTGGKIIFA
                     GFGVGFLYYGLQRVFKLWNEEPTKEFGEPFRGGSIALENNPALLGVGYIIGPRIASIM
                     FAGGVLSYLVLIPMITYFGAGLAAPLAPETAKLIGAMSIGDIQKNYILYIGAGAVAAG
                     GIISLVRSLPIIWHGLKGGISDLRGARGASDDAPRTDRDLSMKFVVGGIVVLVAAIML
                     FRSLNMNLLGALLIVAFGFLFVTVSSRLTGEVGSSSNPISGMTVATLLLTCLVFLLLG
                     WTAPPYFVTALSVGAIVCIASSNGGTTSQDLKTGFLVGATPKSQQIAILIGALASALL
                     LGPMLLQLNQGSTVYMPVANQADFRFPADFRAQQNEFEQSGGQPKRERSRFPGDDKEY
                     MVWHKTNTEHGPAGRYLVNDQGQPVYLVDPGINGIYKKTADGTSVDKFNAPKATLMSY
                     IIKGILSRELPWGLVLLGVFIAVVLELAGIPSLAFAVGVYLPVSASAPIFVGGMVRWL
                     VDKYLRRKFAGHRMTEEQLIAEGDRSPGVLLASGYIAGAALAGVIYAFLNVKEEIRTW
                     LGTREAWATANNPLFAGDYASLWAMIPFLIITVVLYAVGREWLLASRARADAGGPR"
     gene            10669..>11240
                     /locus_tag="VD968_00915"
     CDS             10669..>11240
                     /locus_tag="VD968_00915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12981.1"
                     /translation="MNRTILNARPLAVAPLFALLLLAAPAPAQTAQPQASPGPTPLAP
                     ARAYVAGTPSAAVHAFYKALGERRFREAFAMSVFRPAVEGLSQEEFEELRPDFERMAT
                     GVPAEIVLTGEQVSGEEATVFLKLGEGDKVKVEPVFLLREGGAWIVATGEGREGQKAI
                     KKSGRKFFFEARIEAHHQEVEQMLQRIKLA"
BASE COUNT         1720 a         3870 c         3882 g         1768 t
ORIGIN      
        1 cgccgtcgag ccggcgaagg agaaggggaa gggcaacggg ttcgtgcgcg cgctgacggc
       61 gcccttccgc gctctggcga aactcttcgg cagcaggaag aagtctgacg cggcgaagaa
      121 gcgcgaggag aaggcgcagc cgaagcaagc cggagtcgtt gaggccgctg ttgtcgggac
      181 tgcgccggaa accgtcaaag cccccgaagc ggcgccgaag ccggaggagg cgcagccgag
      241 cgcgccggcc gccgccccga cggtcgcgaa gaccgcgccg acggccgggg gcgcccgcat
      301 cgtccgcccc ggcgagaacg gcgtcgtcga agccgcgaag ccgaagatgt gggtgcctgt
      361 catcggcggc atcccgaaag acccgctctc gcaggggcgc gccctcttgc agcacggcta
      421 cgtgcaggag gcgatctcgg aactttcaat cgccgcctcg cggcccggcc ccgagatagt
      481 cgaggccaac aacctgctcg ggctcgcata cgaccgcatg ggctggcacc tacaggccat
      541 cgagtgctac aagcgcgcgc tctccgtcaa gcccaacgac gccgtcatca tcgccaacct
      601 cggctactcg ctctatctgg ccgaagaccg ccacggggct ctcaagcggc tcaagcaggc
      661 ggcgcggctt tcgccctcga cgcccgtcat acacaacaac ctcggcatcg tgcaggcgcg
      721 catgggccgc tacggcgacg cccttaagag cttcacgcgc gcctcgaacg agtacgacgc
      781 ccacgtaaag ctcgcgggca ttctggaatt ggagaggcgc gaccgcgacg cagcgaagca
      841 ctacgaagcc gcgctcaagc tacagcccgg cacctccgcc ttactcgagc gcctggtcgc
      901 catctacgag cgcaccggcg agcgcaacaa ggccgagacg gcacgccgcg ccctcggcca
      961 gccccagaac ccgcagcgca cggcgacggg cggcggaggc tgacgaagaa aaggtagaag
     1021 gcggaaagca gaaggcagtc aagacgctca ccatgtcttg gctgccttct gctttccgcc
     1081 ttctgtgtct tactgccttt tcgtcaggtt gtagtcgcgc aggcgccggt agagagtcga
     1141 gggggagatg ccgagaatct cggcggtctt gccgcggtgc cagccggtct gctcaagcgc
     1201 ggcgagtatc tgctggcgct cgacttcgcg gaggggcggc ggcacgccgg gcgcgcccgt
     1261 tgcggctgcg gcgccgggcg tcgcggccgc ggcgctgacg gcggcggggc ggaaggcggt
     1321 cgccggggcc gcgatttcgg gaggaagctc ggccgtcgtg atgcggccgt cgttggagag
     1381 caggacggcg cgctctaaag tgttccgtag ctgccggacg ttgccgggcc agtggtacga
     1441 cttgagcgcg gcgagggcct cgggcgtcaa ctccggcgac tgcgccccgc ccaaccgttt
     1501 gagtatgtgc tgcgccagcg gctcaacgtc ttcagggcgc tcgcgcaggg cggggaggct
     1561 tatctggaag ccgttgacgc ggtagagcaa gtccgcgcgg aagcggccgt cggccaccac
     1621 ctcgtttatg tcgcggttcg tggcggcgac gatgcggacg ttgacctgca ctttgcgcac
     1681 ggcgccgacg cggtagaacg agttcgtctc aatcgcacgc aggagctttg actgaagctg
     1741 cggcggaagc tccgtaactt cgtctaagaa tatcgtgccg ttatccgcaa gctcccacag
     1801 gcccagcttg cgccccttcg cgcccgagaa cgcgcccgcc tcgtagccga acagctccga
     1861 ttccagcagc gattcctgga acgccgcgca gttcaggtct atgaaagaac tctcgccgcg
     1921 cgggctcagg cggtgtatgg cgttcgcgac gagctccttg cccgtacccg actcgccagt
     1981 tatcaggacc gaagcgtcag aaggcgcgac gcgctccacc agccgcataa cctcccgcat
     2041 ggcctccgag acgaagacta tctcgggcgc ggccgtgcgc cgctcgacca gggtgcgcag
     2101 gcgcgcgttg tcaacgcgca ggcggcgctt ctcggccgcc tgcttaacga gcgcgtcgag
     2161 ctcggcgatg cggtagggct tcgataggta gtcgtaggcg ccgagcttca tggcctcaat
     2221 ggccgactcg accgtggcgt ggcccgtgag cattatcacc tcgggcgggt tcggccgctc
     2281 gtgcacgcgg cgcagaagct ccatgccgtc catgcgcggc atcgagatgt ccgtgagcag
     2341 cacgtcaacg ttgctctctt cgaggagctt caaggcggcc tcgccgtccg gcgccgcttt
     2401 cacctcgtgg cccatcctct gcaactcttt ctgtatgacg aggcgcaggt tggcctcgtc
     2461 ctcggcgacg aggattcttg ccggttgggt gttctgctgg ctcaagccgc tcggtctccg
     2521 tcggaaggtg tcgcgggcag gtggatcgtg aagaccgacc cgcgccccgg cgtcgaatcc
     2581 acgccgacgc gcccgccgtg ctccgttaca ataccataac agaccgcaag ccccagcccc
     2641 gtgccgcgcc cgacctcctt cgtcgtgaag aacgggtcga atatgcgctc gcgtatctcg
     2701 gccggtatgc cggagcccgt gtccctcacc tctataacga cgcccccgcc gtccccggcc
     2761 tcggcgtcga gccgcgtgct gagcgtgagc gtcccgccgt cgggcatcgc gtcaaccgcg
     2821 ttctcggcga ggatgatgac ggcctgctga agctgcccct cgtctcccga gacgaacggc
     2881 agcccgccgg ccagctccac gtcaatcctg acggccgccc cgcgcttctg gtggagcagg
     2941 agccgggcgg ccgactcgac cacctccgag acgttgacgg gcgcgtgctg cacggcgcgc
     3001 gcgcggctga actcgagcag cccgttcgtt atctgcttgc agcggaacgc ctcgccgcgt
     3061 attagctgca aatactcgcg gaggtcttca acgtcggcgc ccgagccgaa aactccttcg
     3121 gccacgcgcg tctccagggc ctcggcgcag gccgagatgg tggcgagcgg gttgtttatc
     3181 tcgtgcacca ctccggccgc gagccggcct acggccgcga gcttctccga gcgggcgacg
     3241 gcgcggcccg ccgcgacgcg ctccgttatg tcctcgccca cggtgatgac gtgcgacacg
     3301 tcctcgccgt caatcctcat cggcaccttg ctcacgagcc agtggcgcgt cgagccgtcc
     3361 ggcccctgcc cctcctgctc gatgcgctcc atctcgcccg tgcggaaggc gcgctcgaac
     3421 tcgcgctcca tcgcctcgcg cggctgtcgc gtcaagacct cgaagacgtt tcggcccagg
     3481 acgtcgcggc gcggtatgcc ctgcccgccc agctcgcggt tgcggttcca cgcgacgacg
     3541 cggtagttgc ggtcaacggc gtagagcgag acgggcaggc tgtcaatgat ggcttcggtg
     3601 aagcggcgct gcgactcggc ctcggccgtg cggcgctcga cctcgcgcgc caggtgcgcc
     3661 gacgcgctgc gcgccgccgc gtagagcgag gagatgcgcg ccgcgagcga cgcctgctga
     3721 gcggccgcgt caactaacct ctcctcggtc tgcccgcagt cgccagcgcg gtcgaagcct
     3781 acgacgagcg cgccgagcgc gcgcccctcg aaccgtagcg gcgctgcgta ctcgaccgcg
     3841 tggcgctcgt ctttgaggaa gaactcggcc gggtcgcccg tgcgcctcga cgccgcgggc
     3901 gaggtcgcga gccacgcgcg caggcgcgcc gcgtcgagga gccccgcctc ctcctccgcg
     3961 ctcccctccc ggtcgaagac gcacagcgtc agatcctccc tgcccggctc ggccagaacg
     4021 gcggcgcaca gggcggcgtc cgccccctcg taggtcgcgc ccgcgacgcg gcgcacgacc
     4081 tccgcgcccg tcatcgcgtg cagcaggccg cgcccgaggt ctgcgaggaa ggcaagctcg
     4141 cggttgctcc cttccaaagc gcgctcgcgc tcggcggcgt cgaggtgcga gccgacgcga
     4201 gtgacaagct cgcgcgccgt aggccccttc acgacgaagt cgtcggcgcc cgcggcgaac
     4261 gcctcgacct tgtactcctc gcggtcgtgc gacgagacga tgattacggg cagccggcgc
     4321 gtggcggcct gcgcgcgaag cagccggcac agcgcgaggc cgcttacgcc cggaagctcg
     4381 atgtccagga cgacgaggtc gcagggctgg cggtgcagct cgcgtagcgc ggcggccgcg
     4441 tcggcgcagg ccactacgcg gtggccctcc gactcgaacg tgcgctgtag gctccggcgc
     4501 gcgcgctcgt cgtcctcgac gacgaggagc gtcgccgtct tctctgagac gctgggagtg
     4561 gcagacatca gacttctttc gcgcgggcct tcagaggggg gttcgtgggc gcccgcggcg
     4621 tgggctaaaa gattttcaca cgcggaggca ttcggccccc gccccacaaa cgattgaaac
     4681 gaacgcccgc gggaaagtca agagacttgt cgccgccgcc gcgggaaaaa cggcgagccg
     4741 cggccacgcc gactgcccgc gatactggca gtcggcgtgg ccgcggctcg cggcttacca
     4801 gccgtgcttg tcagttgatg gcggtcgagg cgaggtcgcc ggcgtcgagg gcgaggggct
     4861 tgtcctcgcg ggcgtcgccg gcgcgggcca ggcgcttgtg gccggacttg acggcgtaca
     4921 tggcctcgtc ggcggcgatg aggagctggt cgagcgtctc gccgtgcgcg ccgtagaagg
     4981 cggcgccgac ggatatgccg acgcgcgcgt gcttgtcgcc gcgcacgtgg agggagaagc
     5041 gcgagacggc gcgctcgatg cgctcgcaga gctccctgac ctgctcggcc gtcaggtcct
     5101 ggagtatcgc cacgaactcg tcgcccgcgt agcgcgcgag gaagtcgtag tcgcgtagct
     5161 gcgcctggag tatgcgcgcg acttcgcgca gcacgcggtc gcccgtcttg tggccgaacg
     5221 tgtcgttgac ctgcttgaag tcgtcgaggt cgagcatgac gacctggaag gggcgccccg
     5281 tgcggcgtgc gcgcgaggcc tcctgctcga agcgcacgta catggcgcgc gcgttcggaa
     5341 ggcccgtcag cgtgtccgtc atcgcgttcg acttcgtctc ggcgtggtgc atggcgttcg
     5401 agagcgcgtc ggacgcgagg cgcgcgacgg tgtccagtag ccgcaggtgg tcgtccgtgt
     5461 agcggcgcgg ctccgtggaa tagacggcga gcgcgccgag cgtgcgctcg cccttcgaga
     5521 gcggcagcgc gaccatcgag cggaatgcga agccctcggg gagaggcacc tcgcggaagt
     5581 cgagcatggg gtcgagcaaa tatgacggac ggcggtttgc gagcacgaag ccgacgacgc
     5641 cctcgcccgg cgcgacggcg cggccgcgca gaagctccga gtggcggccc gctacatgcg
     5701 cggccgtggc gtagcccttc aactcatcca agagatagac gacgcacagc tcgaacggca
     5761 cgacatggcc gaccttgttg acgagcacgc tcattgtgtc ctctatgtcg agcgacgagc
     5821 cgaaagtgcg cgctatctcg tagagggcat agacctcccg gtgggcgttg gaaatctggt
     5881 tgaggtagtc aggcgtcgag gggtcgtccg tcgtgtgcat gtgtggcggg agcggggctt
     5941 cggcgccctg ctgattttcg ccgagcagct cgcgcgcgtc gaactcggcg tgcgtcagcc
     6001 cgcggtggcc cagctcctgc tcggctatct ctcgctcgaa ctcgggaagg tggttgagga
     6061 agacggcgac gacgcacggg tcgaagtgcg tgccggcgcc cctgcggacg agcgcgcacg
     6121 cctcgtcgtg cgtcatgccg cgccgccagg gccgttcttc gcgcacggag tcgaagcagt
     6181 caacgaccga aagtatgcgc gccgtcagcg gtatctcctc gcccttcaag ccgtccgggt
     6241 agccgcgccc gtcccagcgc tcgtggtgcg agcgcacgat ggggactacg gggtagggga
     6301 agcccacgcg ctctagtatc tgcgcgccga ccgaggtgtg tatcttcatg cgctcgaact
     6361 cggcctcggt gagcttgccc ggcttgttca ggatgtggtc ggggacggcg agcttgccaa
     6421 cgtcgtggag gagcgcgccg gccttgagcg cctttatctc gccgggcgtc agtcccatca
     6481 gctcgcccat gcgcgcgcag taaatctgca cccggcggac gtggcagtgc gtggtctggt
     6541 ctttggcgtc aatggcggtg gcgagggcct cgaccgtcgc gaggtgtatg cgcgaaagct
     6601 cggcggcctc gcgcgtcttc tcggcgacgc gctcgaagta ggttcggtag gtggcgagcg
     6661 cggcggcgac gacagggacg cccagcgcga cgtagagcag cccgaacttc attatcgcgc
     6721 cgtaggcgag gagcgccgcg aaggcgcagc cgaaggacgt cagaggagac cagaggtagc
     6781 cgtcgcgcca gcaacgccag gctccgcggc ggctcttcag agcgacgagc gccgcgccga
     6841 gcaggccgct caacgtgaac tgcgcgagcg ccatcagggc gagcggcagc gcgagctgtt
     6901 cgagcgcgac gggctcgcgg gcgccgagcg ggttgcgcgt gacggcgccg cgagcggcga
     6961 gcacaaggta aaagaggttg ccggcgacga agacggcgac ggccgcgcac gccggcgcgg
     7021 ccagacggcc cggcgcgcgg cgcgacgtgc ggagggagcc ggcgaggctg tcaacggccc
     7081 cggccagcac gcccgcgggg acgccgagga agatgacggc gaggaaggtg aagcagtcgc
     7141 ccgccgtgac gctagacttc gtgccgggga cgcggaaggg gcgcgcgccg gagacgaggg
     7201 cgaggctcac gagggcgagc agttgcgccc aggccgcggc gtcgagcgag aggcagcggt
     7261 ggagcgccca ggcgagcgcc gccgcgcccg ccgagacgac cgcgagccag taggccctcg
     7321 acggtcggtt gtagtcggcc attcccgtca gaatcaagcg cgccctccgt ccggttcggt
     7381 tgcgggttgc gggttgtagg tcgcgggttg cgggtcgtcg ccgtcgcgct tcgactcctc
     7441 gcgcgcgagg cacggctcgc ccgcaggcgg gcgcgtttgg gcgtcgtcgg cccgcggctc
     7501 ggcgtgcgac ctgatttcgc gcaggggcgc gaagctgtcg gagaaagacc tcggcgctgt
     7561 aatcatctcc ggcctcaaaa cgtttccgtc gccgggggcc agggccggga gcaaatcggc
     7621 cctcgccccc ggcgacggct gggggcaacg gcgggcaact cttgtggcac tcgcccgccg
     7681 agctgggtga gaaacatagg ggcgcgcggc ctcctttcaa atgcggccgg cgctcccctc
     7741 cttaaccttc gcgctgtggc gctattcaaa cttggtgcgg ctttacgggc cccgtgcgga
     7801 gggcccgcgg gccgcgcgtg ccgccgaccc tgcaagccgc gccttcccct ttaacaaccg
     7861 gcgtgccgcc cgccggcccg catgaaaatt atggaagtga cggttaagtt cacgcgcggc
     7921 gcgcgcccgg gcgcgccgcg gtcagcgtga cgcgtcaggc tgacgccgag tgagcagaat
     7981 gattacggcg cggccgtcgt cctcttccct tcttgcctcg ccgggcgggc cgcgtgtaaa
     8041 gtagcgcgca agtcaccaag gctcttccct tgcagcacga agaaaaatct gtcggaggtc
     8101 aatactgatg cccactgatt cggttgaccc ggcccgcgca gccgaggcca tggagttccc
     8161 ggatcgcgcc ggctggcggc ccgacaaccc cttccttgcg gccttccgcc cgttcatccc
     8221 ggcggccgcg cgcctgcggg agctgacgcc gctgccgctc atcgtcggca cgctgctcgg
     8281 cgtcatcttc ggcgcctcct cgctttacct cgtgctcaag gtcggcctga cggtcagcgc
     8341 ctctataccc gtggccgtca tctcgataac gttcttccgc atactctcca agatcggcct
     8401 gcgcgacgcg accatactcg agaacaacat cgtgcagacc gcgggctccg cgggcgagtc
     8461 aatcgccttc ggcctcggcg tcacgatgcc cgccatcatg atcctcggct tcgatttgga
     8521 gctgacgcgc gtgatgctgg tggccgtgct cggcggcctg ctgggaatcc ttatgatgat
     8581 cccgctgcgg cgggcgctca tcgtgcagca gcacgggatt ctgaagtacc cggaaggcac
     8641 agcgtgcgcc gaggtgttga aggcgggcgc gtcgcgcgaa tcgctcgacg ccgcgcacac
     8701 ggacgaggcg tcggcgcgcg tggccgacga ggcgacgacg ggcggcaaga ttatcttcgc
     8761 cggcttcggc gtgggcttcc tctactacgg ccttcagcgc gtcttcaagc tgtggaacga
     8821 ggagccgacc aaagagttcg gcgagccgtt ccgcggcggc tcaatcgcgc tcgagaacaa
     8881 cccggcgctc ctcggcgtcg gctacatcat cgggccgcgc atcgcctcta tcatgttcgc
     8941 gggcggcgtg ctctcctacc tagtcctgat cccgatgatc acttacttcg gcgcgggcct
     9001 cgccgccccg ctcgcgcccg agacggccaa gctcatcggc gccatgagca tcggcgacat
     9061 acagaagaac tacatcctat acatcggcgc gggcgccgtc gcggcgggcg gcatcatcag
     9121 cctcgtgcgc tcgctcccga ttatctggca cgggctcaag ggcggcatat ccgacctgcg
     9181 gggcgcccgc ggggcctcgg acgacgcgcc gcgcaccgac cgagacctct cgatgaagtt
     9241 cgtcgtgggc ggcatcgtcg tgctcgtcgc ggccatcatg ctcttccgct cgctcaacat
     9301 gaacctgctg ggcgcgctcc tcatcgtcgc cttcggcttc ctgttcgtga cggtctcgtc
     9361 gcgcctgacg ggtgaggtcg gttcctcttc taacccgatc tcgggcatga ccgtggcgac
     9421 gctgctcctg acgtgcctcg tcttcctgct cttggggtgg acggccccgc cctacttcgt
     9481 cacggcgctc tcggtcggcg caatcgtctg tatcgcgtcc tcgaacgggg gcaccacgtc
     9541 gcaggacttg aagaccggct tccttgtcgg cgcgaccccg aagtcccagc agatagccat
     9601 actcatcggc gcgctcgcct cggccctcct gctcgggccg atgctccttc agctcaacca
     9661 gggctcgacc gtttacatgc cggtcgcgaa ccaggcggac ttccgcttcc cggcggactt
     9721 ccgcgcgcag cagaatgagt tcgagcagtc tggcgggcag cccaagcgcg agcgctcgcg
     9781 cttccccggc gacgacaagg agtacatggt ctggcacaag accaacaccg agcacgggcc
     9841 cgcgggccgc tacctcgtca acgaccaggg tcagcccgtc tatctcgttg accccggcat
     9901 caacggcatc tacaagaaga cggccgacgg cacgtccgtt gacaagttca acgcgccgaa
     9961 ggcgacgctg atgtcctaca tcatcaaggg catactgagc cgcgagctgc cgtggggcct
    10021 cgtcctgctc ggcgtcttca tcgccgtcgt gctggagctt gcgggcatcc cttcgctcgc
    10081 cttcgcggtc ggagtctatc tgcccgtctc cgcctcggcg cccatcttcg tcggcggcat
    10141 ggtgcggtgg ctcgttgaca agtacctgcg ccgcaagttc gccggccaca ggatgaccga
    10201 ggagcagctc atagccgagg gcgacaggag ccccggcgtg ctactggcct ccggctacat
    10261 cgcgggcgcg gcgctcgccg gggtcatcta cgccttcctt aacgtgaagg aggagatacg
    10321 cacctggctc ggcacgcgcg aggcgtgggc gacggcgaac aacccgctct tcgcgggcga
    10381 ctacgcgagc ctgtgggcga tgatcccgtt cctgataatc acggtcgtgc tctacgcggt
    10441 cgggcgcgag tggctgctcg cctcgcgggc gagggccgac gcgggcggcc cgcgttaggc
    10501 gcttgacggc tttccgagcc ggatggaaaa atggttgacc gcgggcgctc ccctcccgcg
    10561 gtcaaccatt tcgtttttcg gcgcggcccc cgcgcggccg ccgccctccc gccggagact
    10621 aaacaagcca gatcctgact tcccgctttg ccgaacaggc ccgagacgat gaacagaacc
    10681 attctcaacg cgcgcccgct cgccgtcgcg cccctcttcg cgctccttct gctcgccgcg
    10741 cccgcgcccg cgcagacggc gcagccgcag gctagccccg gccctacgcc gttggccccc
    10801 gcacgggcct acgtggcagg cactccttcg gcggccgtcc acgcgttcta taaagcgctg
    10861 ggcgagcgcc gcttccgcga ggcgttcgcc atgtcggtct tccgcccggc cgtcgaaggc
    10921 ttaagccagg aggagttcga agagctgcgg cccgacttcg agcgcatggc gacgggcgtc
    10981 cccgccgaga tcgtgctcac gggcgagcag gtgagcggcg aagaggccac ggtcttcttg
    11041 aagctcggcg agggcgacaa ggtgaaggtc gagcccgtct tcctcctgcg cgagggcggc
    11101 gcctggatag tcgccaccgg cgaggggcgc gaggggcaga aggccataaa gaagagcggc
    11161 cgaaagttct tcttcgaggc gcgcatcgag gcgcaccacc aggaggtcga gcagatgcta
    11221 cagcgcatca agctcgcgca
//
LOCUS       DASPKR010000033         6342 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1815671, whole genome shotgun sequence.
ACCESSION   DASPKR010000033 DASPKR010000000
VERSION     DASPKR010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6342)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6342
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1815671"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..825)
                     /locus_tag="VD968_00920"
     CDS             complement(<1..825)
                     /locus_tag="VD968_00920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12982.1"
                     /translation="MARKKQGGAHDESRRRFIAGAALAGGALLAQTACAKGGGAGTKA
                     AKAVAANALASSPVLAAAGLGSRPSRVPADVVLDYSYDAVHLMNGAGAPLYAADEVYK
                     RFLARLREFPPEVLIVGKEAPFTHSFGPVLSFGGENRTQPLPRNLRGQDPLRRLTPSE
                     LGQRVKAISQFVADAHAAGVRHVVPYISPITMFGDADARLGFFEFYDRWDEYERAFQL
                     GPRPAGDPVSWTQQDPEGDVAFTMGEKQKLGSMRRYSMCVNNPGWRQWQMIVARWAA"
     gene            961..1581
                     /locus_tag="VD968_00925"
     CDS             961..1581
                     /locus_tag="VD968_00925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12983.1"
                     /translation="MSRRGGAPGAKEKTKTTLLVAAALALLAAAPPLAHGARQREDAP
                     RAPAYELEGTLADIKTKRKVTLVVVRAKTVDSRDTARSAIEEARSVEEAREAAGEEAR
                     AGANRRQRRRHAYAYNVVAEKLNNYMKKHGGMSAAMGLDDAEFVVIFNLLEYRRVLNS
                     IYPFGELFVVVNGPRPRLVWRSSKATFAEDAAGEFIKELKASRGQK"
     gene            complement(1823..2479)
                     /locus_tag="VD968_00930"
     CDS             complement(1823..2479)
                     /locus_tag="VD968_00930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12984.1"
                     /translation="MENALRGNTPDEALPLFSIIQGEALSLCAFMEAHRGEPYVAPGL
                     AEAIDSAAFATRHEMRRVFERELARLADDTEADKRASVADAHEVLRNCFQQATALIAN
                     SLDSRVSDVKLFGDVQVRRERSVQLCEDLNALLRVMRHVEEDFSPQAVTLFVMRLQDF
                     RLGSMRYLMQKDWAAIEAFLAQVPTLHSERKIKTFIHQFSGYLEVLLGHVRMRSVLSS
                     "
     gene            2744..3784
                     /locus_tag="VD968_00935"
     CDS             2744..3784
                     /locus_tag="VD968_00935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12985.1"
                     /translation="MLRALVLSAAALAASASGARAQWAAQQSGTTVRLRGVSAVSARV
                     AWASGDRGTYARTTDGGKTWRAGRVPGAEDLDFRDVDAFDADTAYLLAIGPGDRSRIY
                     KTVDGGRTWALQFKSGRAEAFFDCMAFWDRRRGVAMSDPVGGRFVVITTSDGGRTWAE
                     TPTAGMPPALEGEGGFAASGTCVAVAGRRDAWFGTGGPNGARVFRSGDGGRTWSASMT
                     PLVSDKAAGVFSVFFGDRMRGVVVGGDYTKEAEASGNVAVTTDGGRAWARPTGSGPRG
                     YRSCVAQAGRGALVAVGPSGSDYSLDGGRTWAALGDEGFHAVSFAKGTNAGWAVGEGG
                     RVARFTGRLGKG"
     gene            3789..4043
                     /locus_tag="VD968_00940"
     CDS             3789..4043
                     /locus_tag="VD968_00940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12986.1"
                     /translation="MGERGKPIRASEVGEYVFCARAWRLRVDGVKPTSGGEAREAGTR
                     WHRSHGRTVRRAKRLRALASLLFFLALALAAFALLLRVWR"
     gene            4040..4615
                     /gene="cas4"
                     /locus_tag="VD968_00945"
     CDS             4040..4615
                     /gene="cas4"
                     /locus_tag="VD968_00945"
                     /inference="COORDINATES: protein motif:HMM:TIGR00372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0043571 - maintenance of CRISPR repeat
                     elements [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas4"
                     /protein_id="HYE12987.1"
                     /translation="MMTALLLAVAFALVLLAVAAGVASRRAARGSGLPRGRMLYSDTG
                     FAVGKVAPTVAGEDGERQERPLLSRRHGLVGRPDYVVRTAEGIVPVEVKSSRCPPGGE
                     PYDSHVMQVAAYCLLAEDVLGERVPHGLIRYRDCDLKVEYTEELRGELLALLEEMREA
                     RRAEEVHRSHEEPRRCAGCSMREQCDESLAG"
     gene            complement(4623..5054)
                     /gene="dut"
                     /locus_tag="VD968_00950"
     CDS             complement(4623..5054)
                     /gene="dut"
                     /locus_tag="VD968_00950"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF001862.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HYE12988.1"
                     /translation="MSEKLMFLKLHPAARLPTRGSRGAAGLDLYSIEEVTLGAGERAA
                     VRTGLSVAIPEGFYGRVAPRSGLAVRSGLDVLAGVVDSDYRGEILCALINHGREPLTL
                     EAGARIAQLVIERIASPEPAWAENLSETERGAGGFGSTGGG"
     gene            5102..6208
                     /locus_tag="VD968_00955"
     CDS             5102..6208
                     /locus_tag="VD968_00955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12989.1"
                     /translation="MPRPLTATLCLCALLFFAGPAEGRQKMSAAAARRDREVAARFAP
                     TFRQGVGDRRRSDFITNFNFDGDWRGDNNWKNAEDPRFKLRAFVYYAVSETPTHLLIH
                     YALFHPQDYKGGGLRGPLLSEAIREGVRRGGRYDPTGLAEEAVLAHENDMEGCLVVVE
                     KQGDDLGAARVAYVETLSHNRFLKYAAAGGEGSKGVRVEGGRAELYVEPKGHGVEAYD
                     GGEGQRPKEGLIIYKFAGRAEDPEAETAGAEVGYDLLPLYTTIWPRALKGEGETFGAA
                     GDFALSVKVAGRRGRAGAAKKARLSRLGAAFRGSVGAANAARAPWGWHDSADRDLPAG
                     SWFFDPAATVKRHFKLGDTFSTDYTHAPFLGIFR"
BASE COUNT          942 a         2147 c         2299 g          954 t
ORIGIN      
        1 cgccgcccag cgcgccacta tcatctgcca ctgccgccag ccggggttgt tgacgcacat
       61 gctgtagcgg cgcatcgagc cgagcttctg cttctcgccc atcgtgaagg ccacgtcgcc
      121 ctccgggtct tgctgcgtcc aggagacggg gtcgcccgcg gggcgcgggc cgagctggaa
      181 ggcccgctca tactcgtccc agcggtcgta gaactcgaag aagccgaggc gcgcgtcggc
      241 gtcgccgaac atcgtaatcg gcgagatgta agggacgacg tgcctgacgc cggcggcgtg
      301 cgcgtccgcg acgaactgcg agatggcctt gacgcgctgg cccagttccg agggcgtgag
      361 tcgccgcagg gggtcttggc cgcggaggtt gcgcgggagg ggctgcgtcc tgttctcgcc
      421 gccgaaggag aggacggggc cgaagctgtg cgtgaagggc gcctccttgc cgacgatgag
      481 cacctcgggc gggaactctc gcagccgcgc gaggaacctt ttgtaaactt cgtcggccgc
      541 gtagagcggc gcgcccgccc cattcatgag gtggacggcg tcgtagctgt aatcgagaac
      601 cacgtcggcc ggcacccgcg acgggcgcga gcccaagccg gcggccgcca gcacgggcga
      661 agacgccagc gcgttcgccg cgaccgcctt cgcggccttc gtccctgcgc cgccgccctt
      721 cgcgcaagcc gtctgcgcga gcagcgcgcc gcccgcgagc gccgcgcccg ctatgaagcg
      781 gcgcctagac tcgtcgtgtg cccccccctg ctttttcctc gccactttga ttcctttcgc
      841 atgcccctcg ggattcaacg cggagacggc gacagtataa tttacgcggc cctcgcccgc
      901 acgcgcgcgc cggcgcggat aggtgttccg ccccggcccg cgcggcgtta tactcgccgc
      961 atgtcccgga gaggcggcgc gcccggcgcg aaggagaaga cgaagacgac gctgctcgtc
     1021 gcggccgcgc tcgcgctcct cgccgccgcg ccgccgctcg ctcacggcgc gcgccagcgc
     1081 gaagacgccc cccgcgcgcc ggcttacgag ctagaaggga cgctcgccga catcaagacg
     1141 aagcggaagg tgacgctcgt cgtcgtgcgc gccaagaccg ttgacagccg cgacaccgcc
     1201 cgctccgcca tcgaggaggc ccgctccgtc gaggaagcgc gcgaggcggc gggcgaggag
     1261 gcgcgcgccg gggcgaaccg acgccagcgc aggcgccacg cctacgccta caacgtcgtc
     1321 gccgagaagc ttaacaacta catgaagaag cacggcggga tgagcgccgc catggggctc
     1381 gacgacgcgg agttcgtcgt catcttcaac ctgctcgaat accgcagggt gctcaacagc
     1441 atctacccct tcggcgagct cttcgtcgtc gtcaacggcc cccgcccgcg cctcgtctgg
     1501 cgcagctcca aagccacgtt cgcagaggac gcggccggcg agttcatcaa agagttgaag
     1561 gcgtcgcgcg gccagaagta accgcggccg agccttcgtc tctaagccgc ggccggcccc
     1621 gtccccccct cacgcatcaa ttttgaggcc gcccgcccgt tcgccgctcg caggtgcccc
     1681 ctcacgcttc aggcgcgagc gcgcgcgccg ccgccggtac ggcggcccat tcggtccggc
     1741 cgggcggcct caatctctta acgcgcgaaa tcggcggcgt gggggtcagt cggcggggag
     1801 aaaattttcg gcgccggccc ggtcaactgg agaggacgga gcgcatgcgg acgtggccga
     1861 gaaggacttc gagatagccg ctgaactggt gtatgaaggt cttgatcttc ctctcggagt
     1921 ggagcgtcgg gacttgcgcg aggaaggctt cgatggccgc ccagtccttc tgcatgaggt
     1981 atcgcatgct ccccaggcgg aagtcctgaa ggcgcatgac gaagagcgtg acggcctgcg
     2041 ggctgaagtc ctcctcgacg tggcgcatca ccctcagcag cgcgttcaag tcctcgcaga
     2101 gctgcacgga gcgctcgcgc ctgacctgca cgtcgccgaa cagcttaacg tcgctcacgc
     2161 gcgagtcgag cgagttggcg atgagggcgg tggcctgctg gaagcagttg cgcaagacct
     2221 cgtgcgcgtc ggcgacgctc gcgcgcttgt cggcttccgt gtcgtcggct aagcgcgcca
     2281 gctcgcgctc gaagaccctg cgcatctcgt ggcgggtggc aaaggcggcg ctgtcaatcg
     2341 cctcggcgag gccgggcgcg acgtagggct cgcccctgtg cgcctccatg aaggcgcaga
     2401 ggctcagcgc ctcgccctgt atgattgaga agagcggcag cgcctcgtcg ggcgtgttgc
     2461 cgcgcagcgc gttctccacg acgtcgaggt agccgagcag cctcgtgagg tcttcgaaga
     2521 cgcccgagac gaagtggcgc agttcggtgg gccgaaggtt ctgcgtgagc gcgttgagtt
     2581 gggggtgcag gggcctcgaa cctcctgtgc ggcggtctcg cgctcggggc gtgcgcgtcg
     2641 ccgggggcgc gcaggttgta acaaggcggc ggcggccgtg tcaacaccaa tttccccgcg
     2701 gggaagtttt aagttttcgc gtttcggctc tatgctacgg cgcatgttga gggctttggt
     2761 tctgtccgcg gccgccctgg cggcctcggc ctcgggcgct cgggcgcagt gggccgcgca
     2821 gcagagcggg acgacggtga ggcttcgcgg cgtgagcgcc gttagcgcgc gcgtcgcgtg
     2881 ggcgagcggc gaccgcggga cttacgctcg cacgactgac ggcggcaaga cgtggcgcgc
     2941 gggccgagtg ccgggcgcgg aggatttaga cttccgcgac gttgacgcct tcgacgcaga
     3001 tacggcttac ctcttagcaa tcggccccgg cgacaggtcg agaatctata agaccgtgga
     3061 cggcggccgc acctgggcct tgcagttcaa gagcgggcgc gccgaggctt tcttcgactg
     3121 catggccttc tgggacaggc gccgcggcgt ggcgatgagc gaccccgtcg gcggccgctt
     3181 cgtcgtcatc acgacttcgg acggcgggcg cacgtgggcg gagacgccga cggcggggat
     3241 gccgcccgcg ctcgaaggag aaggcggctt cgcggcgagc ggcacgtgcg tcgcagtcgc
     3301 cggccgccgc gacgcgtggt tcggaacggg cggcccaaac ggcgcgcgcg tcttccgctc
     3361 gggcgacggc gggcggacgt ggagcgcctc gatgacgccg ctcgtgagcg acaaagcggc
     3421 cggcgttttc tccgtcttct tcggcgacag gatgaggggc gtcgtggtcg gcggcgacta
     3481 cacgaaggag gccgaagcgt cggggaacgt cgccgtcacg acggacggcg gaagggcgtg
     3541 ggcgcggccc acgggctcgg ggccgcgcgg ctacaggtct tgcgtggcgc aggccgggcg
     3601 cggcgcgctc gtagccgtcg ggccttcagg ctcggattac tcgctcgacg gcggccgcac
     3661 ctgggcggcg ctcggcgacg aaggcttcca cgccgtcagc ttcgctaaag ggactaacgc
     3721 gggctgggcc gtaggcgagg gcgggcgcgt cgcgcgcttc accggcaggc tcgggaaggg
     3781 ttgattcgat gggcgagcgc gggaagccga tacgcgcgtc ggaggtgggc gagtacgttt
     3841 tctgcgcgcg cgcgtggagg ctgagggttg acggcgtgaa gcccacctcg ggcggagagg
     3901 cgcgcgaggc cgggacgcgc tggcaccgct cgcacggccg gacggttcgc cgcgcgaagc
     3961 gcctgcgcgc gctcgcctct ctgctatttt ttctggcgct cgcgctcgcg gcgttcgctc
     4021 tgctgttaag ggtttggcga tgatgacggc gctgctgctg gccgtcgcct tcgcgctagt
     4081 cttgctcgcc gtcgcggcgg gcgttgcgtc gcggcgggct gcgcgcgggt cgggcctgcc
     4141 gcgcgggcgc atgctttaca gcgacacggg cttcgccgtc ggcaaggtcg cgccgacggt
     4201 cgcgggtgaa gacggcgagc ggcaggagcg gccgcttctg tcgcgcaggc acgggctggt
     4261 cgggcggccc gactacgtcg tgcggacggc cgagggcatc gtccccgtcg aggtgaagtc
     4321 ctcgcgctgc ccgccgggcg gcgagcccta cgactcgcac gtgatgcagg tcgcggccta
     4381 ctgcctgctc gccgaagacg tgctcggcga gcgcgtcccg cacgggctca ttcgctaccg
     4441 cgactgcgac ttgaaggtcg agtacaccga agagcttcgc ggggagctgc tcgcgctgct
     4501 cgaagagatg cgcgaggcga ggcgcgccga ggaggttcac cgcagccacg aggagccgcg
     4561 ccgctgcgcc ggctgctcga tgcgcgagca gtgcgacgag tcgctcgccg gctgaaggct
     4621 cgtcagccgc cgcccgtgct cccgaagccg cccgcgccgc gctcggtctc gcttaggttc
     4681 tcggcccatg cgggctcagg gctagcgatg cgctctatga cgagctgagc gatgcgcgcg
     4741 ccggcttcga gcgtcagggg ctcgcggccg tggttgatga gggcgcatag aatctcgccg
     4801 cggtagtcgc tgtcaacgac gcccgcgagc acgtcgaggc ccgagcgcac ggcgaggccc
     4861 gagcgcggcg cgaccctgcc gtagaagcct tcgggaattg cgaccgagag gcccgttctc
     4921 acggccgcgc gctcgcccgc gccgagcgtg acctcttcga ttgaatagag gtcgagcccc
     4981 gcggcgccgc ggctccccct cgtcggcagc cgcgcggccg ggtgaagttt caggaacatc
     5041 agcttctctg acatgcgccg atcatacgac gcatcaaaat aacaatcgag cgagacggaa
     5101 gatgccccgg cccctaaccg ccaccctctg cctctgcgcg cttctcttct tcgcaggccc
     5161 ggccgagggc aggcagaaga tgagcgccgc ggccgcgcgc cgcgaccgcg aggtggccgc
     5221 gcgcttcgcc cccaccttcc gccagggcgt gggcgaccgc cgccgctcgg acttcatcac
     5281 caacttcaac ttcgacggcg actggcgcgg cgacaacaac tggaagaacg ccgaagaccc
     5341 gcgcttcaag ttgagggctt tcgtctatta cgccgtcagt gagacgccga cgcacctcct
     5401 catacactac gccctcttcc acccgcagga ctacaagggg ggcggcctgc gcgggccgct
     5461 cctgagcgag gccatacgcg agggcgtgcg ccgcggcggg cgctacgacc cgacgggcct
     5521 cgccgaagag gccgtgctcg cgcacgagaa cgacatggag ggctgcctcg tcgtcgtcga
     5581 gaagcagggc gacgacttgg gcgcggcccg cgtcgcctac gtcgagacgc tctcgcacaa
     5641 ccgcttcctc aagtacgcgg ccgcgggcgg cgagggctcg aagggcgtga gggtcgaggg
     5701 cgggcgcgcc gagctgtacg tcgagccgaa gggccacggc gtagaggctt acgacggcgg
     5761 cgagggccag cgcccgaaag agggtttaat catctacaag ttcgccgggc gcgccgaaga
     5821 cccggaggct gagacggcgg gcgcagaagt cggctacgac ctgctgcccc tctacacgac
     5881 gatctggccg cgcgcgctca aaggcgaggg cgagacgttc ggcgcggcgg gcgacttcgc
     5941 cctgtcggtg aaggtcgcgg gccgtagggg gcgcgcgggc gcggcgaaga aggcgcggct
     6001 gagcaggctg ggcgcggcct tccgcggctc ggtcggcgcc gccaacgcag cgcgcgcccc
     6061 gtggggctgg cacgattccg ccgaccgcga cctgcccgcg ggctcctggt tcttcgaccc
     6121 ggccgcgacc gtcaagcgac acttcaagct aggcgataca ttctcaaccg actacacgca
     6181 cgcgcccttt ctcggaatct tcaggtgaga aagcagaagg cagaaggcag aaagcataag
     6241 gcagtcgaaa agcgcccgtg ctgtagctgc cttctgcttt ctgccttctg tcttatctcg
     6301 tctcttcgaa ctctgcgggg tcgtgctcgc ccgcgatgcc tg
//
LOCUS       DASPKR010000034        17497 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_781233, whole genome shotgun sequence.
ACCESSION   DASPKR010000034 DASPKR010000000
VERSION     DASPKR010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 17497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17497)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17497
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_781233"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..352)
                     /locus_tag="VD968_00960"
     CDS             complement(<1..352)
                     /locus_tag="VD968_00960"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HYE12990.1"
                     /translation="MTAPNNNGVTELMIAASRGDLARVDALLASGAETDARDAFGYTA
                     LMYAASAGHAAVVEALLDAGAEVQARSRNNQTGYDIAKSKGHEGVARLLRHARLFFAA
                     RDGDVQLVGELLDDG"
     gene            611..763
                     /locus_tag="VD968_00965"
     CDS             611..763
                     /locus_tag="VD968_00965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12991.1"
                     /translation="MLCRHCERPLTLLRLKCPTCRTRQPTWYLTAALLSAAAFVAVVY
                     AILRQH"
     gene            831..1388
                     /locus_tag="VD968_00970"
     CDS             831..1388
                     /locus_tag="VD968_00970"
                     /inference="COORDINATES: protein motif:HMM:NF013122.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HYE12992.1"
                     /translation="MLYNTKSLYTPALEPYELNERALIIDTETLGAGPTVEIIEVALA
                     DSEGRVIYESLVRPVFNRLPPPSRHERFPRAEIESAPEWPAVWEELAPLVDNRLLVAY
                     NAAFDRRALAATCSRYRQRTAERGWRCVMQLAKRLMGAKKSVTLEAACAHFSVEAGNH
                     RAARDVRATHALLMALLKESPPGGR"
     gene            1500..3587
                     /locus_tag="VD968_00975"
     CDS             1500..3587
                     /locus_tag="VD968_00975"
                     /inference="COORDINATES: protein motif:HMM:TIGR04312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choice-of-anchor B family protein"
                     /protein_id="HYE12993.1"
                     /translation="MRKRLLLLTALAALCALAALGWPSRAHDGEHHSPGGNGQPGGAP
                     LAAQGFTPCLNGAAGTFPCSNVDLASLLPIADIDGTDAAGVTSNDVWGWTDHQTGKEY
                     ALLGLSNGVAFVDITDPASPVHLGNLPTHSVNSLWRGVKVYRDHAFVISEAANHGLQI
                     FDLRQLRGRTAPAVTFGETAHYDNVSSTHTIAVNEETGFVYLAGSRPNPNKTVGVETC
                     GGRGLHMVDVRNPSSPAFAGCVDSDGYTHETQCVIYRGPDAAHRDREICFSANEDTVT
                     IVDVTNKANPVQLSRTTYAGRGYTHQGWLTDDHKNFLLNDELDETGQHVNTRTFVWDV
                     TDLDAPFVKNVQTLSTTAIDHNLYVRGRFVFESNYRSGVRVLDTANVAASGALSEVAF
                     FDVYPADDQPLFNGTWANYPFFASGTVIASGMEQGLFVLKPRVGLPVHIDYTPFFVRQ
                     HYRDFLSREPDEGGLAFWSHEIAACTTDAQCAEVKRINVSAAFFLSIEFQQTGYLVYR
                     FYKSAFGDMPGAPVPVRREEFLPDTRRIGEGVRVGIGDWAAQLEANKQAFALEFVSRQ
                     RFADAFPAAMTPAEFVNKLNANTGFALTQAEVDALVAELSADNTNAGRASVLRKVAEN
                     AELARREFNKAFVLMQYFGYLQRNPNDAPDTGFGGFNFWLGKLDEFQGNFIQAEMVKA
                     FITSIEYRQRFNQ"
     gene            3595..3990
                     /locus_tag="VD968_00980"
     CDS             3595..3990
                     /locus_tag="VD968_00980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12994.1"
                     /translation="MEGSRRPGLKTLTRWAGLKCPACGVASIVARPFQIKHHCPACRA
                     LFKREDGFFVGALAINVVTTEFVILATYVVSIFFVGQNFNALIYALLALAFAFPVAFY
                     HHAWAAWLTLDHIVESLPTHAEGGAPPAK"
     gene            4163..5962
                     /locus_tag="VD968_00985"
     CDS             4163..5962
                     /locus_tag="VD968_00985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12995.1"
                     /translation="MRVTLALTLVLIVAVLSSAQTRRRGAAAQAPPGGYWPPEKARQL
                     LEKTQTVRLAPDLSHLTTGERAAVAKLLEVGRIFQSLYERQRHERALEAYAELARRRG
                     AGARDLLDIYRLFQGPIATTLENKREPFLPVAATVPGKNVYPWGVTKAEVESFLASRP
                     DRRDSILDARTVVRRATAPELRADLASLRRHPALDALQPGLRRELESLLRRPDPEGFY
                     AVPYSVAYADEMVRSHALLNEAADAVQRDDEEFARYLRNRARDLLSNDYESGDASWVT
                     GRFKNLNAQIGAYETYDDELFGVKAFFAVSVLATRREETEALRSAMRGLQALEDSLPY
                     ERRKKVREDIPVGVYDVVADFGQARGPNTATILPNEAYLARRYGRTILLRANIMRNPE
                     LFQSTGSAWEAAVAPAHAPELTPDGNFYRTLWHEVGHYLGVDTTRGGQDLDAALQENA
                     SLLEEMKADLVSLFVAEALRKQGYYTAGQLRSVYASGVNRVLQNNPPRRDQPYQTMQL
                     MQWNFFLERGLLSFDRQSQRLRINYDKYHDVVGDLLKQVLEVQYEGDRAAADRFIERY
                     AKWDEPLHGAVAKNIRDRQRHRFRLFRYAALGE"
     gene            complement(6072..6932)
                     /locus_tag="VD968_00990"
     CDS             complement(6072..6932)
                     /locus_tag="VD968_00990"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HYE12996.1"
                     /translation="MTGAEGPVTELMKAASRGDYRAARRLIEEGGADVNARDQFGTTA
                     LVYAAAGGHVEVVRLLLASGADRGAKDSAGAGALERASAEGHGQVVALLRRDDEEGGA
                     GPESHGASAALAGTDKRLLAASREGDAAGVKELLASGADASARMPGSGWTPLIAAAFA
                     GEAEVVRLLLAAGADPRARTADGRTALHFAVSLGDAEATRLLLAAGADPEAADAGGWT
                     ALAAAACEGSLEVAAELLAGGADPRALNRLGETALDIARAHGHASIVELLEQHTAPRS
                     LTDGGANYAA"
     gene            complement(6959..8236)
                     /locus_tag="VD968_00995"
     CDS             complement(6959..8236)
                     /locus_tag="VD968_00995"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE12997.1"
                     /translation="MTPEQTTETRPARRTALVLASAAAALLLFSSCAWWVGRAGLARL
                     VADYGVRSGVRDAGGLAVELSPSDPESHYALAGLLTASGDYAGAARAYEQTLRLRPSD
                     YVVWLELGKAREQAGDVEGALAAFRESARLAPFYAQPRWQLGNTLLRAGRLDEALAEM
                     RAAAESDPKLYRTFLQAVWHVSGKDAGAVMEVARPRDPEESLALARFLARSGEPAAAV
                     KVYREAASRLPEGARRTVVAELIKAGGFAEAHEVWGGGSGAGQLTDGGFEATHRTDEG
                     GFGWRFADKVETVRASLDTQGPREGARSLRLEMAGNFEPSSRLLSQLVLVEPGARYRL
                     QFSARTRNLVTGGPVLVGVSLAEGEHEGRRLASAEPLPTGTTEGWRDFSLEFAAPEGA
                     RAVLVFVRRQECTALPCPAFGSLWLDRFGMKKL"
     gene            complement(8359..9054)
                     /locus_tag="VD968_01000"
     CDS             complement(8359..9054)
                     /locus_tag="VD968_01000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE12998.1"
                     /translation="MTTLKNRWPKVFALVLTVALTQVYVQADLLRAASARLAGSPAAQ
                     AQGRLTTRNDAPITAGGNQVKTGDTIFSGQAIQTPAGTGATVDLGPLGRVDIAPNADV
                     VITFEGNRIHVKVNRGCVIVYPSKGTPVVVEASGAVISDPNGGGPVDVCASDSGGAPI
                     IGKGAAAAAGAGAIAAPVVIAGTAAGISTGAVVGGLLGAGGLITAAIVVPCRRGANPS
                     PGTPRGRNDECRD"
     gene            complement(9208..10635)
                     /locus_tag="VD968_01005"
     CDS             complement(9208..10635)
                     /locus_tag="VD968_01005"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HYE12999.1"
                     /translation="MTKLMTGAASPSPQSAARDPRPASLLGRFVFYCALLLVAASAVP
                     YGSIEPWWEAAFVSAALALGCLWAVEAVLTGGWGLGRRDLLLLLPAVALTLFALFQTL
                     PLGAAAGAISADPFETRLFAAKVAALTLLGAILLRFGRARGRLHAMVIAVVGVGAASA
                     LFGILRQATQQEGEGFLLPHLVRGEGYAQFISRNQFCFMMEMALGPALCLAAARWGRP
                     GWRLFYLAALLPIGAALILANSRGGVLTLLCQLLFFAAVAAPSLLAARGGRETGPRVG
                     GGWRSALGSAAARVGLSTALAAAVVLAVVWVGGEPVVSNLSTVPEELGEMEQMIPRMN
                     TSRADIWRSTWKLFAEHPVAGVGFGGYWTAITRHHDASGDFVPQQAHNDYLDLLAGGG
                     IVGAGLVVWLVLSVLRRARAALAGGGTFRRAACLGALVGLFGVAVHSLVDFGLHITVN
                     AALAVVLSVVAAVDVPEEGAAAPYA"
     gene            complement(10649..12709)
                     /locus_tag="VD968_01010"
     CDS             complement(10649..12709)
                     /locus_tag="VD968_01010"
                     /inference="COORDINATES: protein motif:HMM:NF014740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate sugar
                     epimerase/dehydratase"
                     /protein_id="HYE13000.1"
                     /translation="MTTRSTPDDDSFVSRTLNEYGAKFNEVLNSPRVRRYITRRRIHF
                     ALDFLTFLLALALAYLLRFDFAPGWDNAADLLRQAAYVVPLQMLMLWYFDGYRLIWRY
                     VGMSEIGPFVRAAAASCGLLLLVRLLPSPVPNDWRVPLSIALIDAGLGFGGVLGLRIA
                     RRAVDEWKQRRENGERAQSAAPAAGRKAVLLIGAGRAGVLAAREIQGRGDMNLDIKGF
                     VDDDLSKHGKVISRIPVLGTTDDLPRLVRELGIDHVVITIAQTSRDNIRRIVRACEKI
                     PVRVRVIPGLYEILLGHVEVSRLRDVQIEDLLGRDPVDLDIEGICSFLGGKTVMVTGA
                     GGSIGSELVRQIARFGPSCLLLVERAEPALFQIDREVRELVDGFPIVPLIADVGDESR
                     MRNIMEEYRPQVIFHAAAHKHVPMMESNATEAVKNNVLATHNVGRLAGEFGAEVFVLI
                     STDKAVRPTSVMGASKRMAELAAQSLNGRYATRYVSVRFGNVIGSAGSVIPIFREQIR
                     KGGPVTVTHPDMVRYFMTIPEAAQLVLQAGGIGQGGEILILDMGEPVKILDLALDTIT
                     LSGYKPYEDIDVVVTGMRPGEKLFEELAFNEEQITKTRHPKIFIGKVQTYAETVVGEA
                     LARLSELSARGDEQAIRRYVSDLLPESNLTLGGADDEEARGDEPAEVQGAEAGRLAAA
                     KTFA"
     gene            complement(12986..14182)
                     /locus_tag="VD968_01015"
     CDS             complement(12986..14182)
                     /locus_tag="VD968_01015"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HYE13001.1"
                     /translation="MRETFLPFSPPLIGEEEIAEVVDTLRTDWITTGPKVKRFEEEFR
                     QYVGAPAALALNSCTAALHVALAALGVGPGDTVITTPLTFCSSVHVIEHTGARPLMAD
                     VSPDTLNIDPARVEEAVESVIKSGGRVRALLPVHLYGHPCDMGALMALARDHRLAVVE
                     DAAHALPASHEGRTVGSFASHYGDVPVFTCFSFYATKNLTTAEGGMLTGPQALVDEAR
                     VWSLHGMSRDAWNRYGEKGSWYYEVVRAGFKYNMTDIQAALGLHQLRKLDSFQRRRAE
                     IVSRYDEAFSRIEELTLPGRRPEVGHAWHLYVVRLKLERLTITREQFIEELKERRIGT
                     SVHFIPVHTHPYYRDKYGYRPEDFPVAYGEFRRMVSLPLNPRMSDRDVEDVIEAVSDV
                     VGKFRR"
     gene            complement(14216..14620)
                     /locus_tag="VD968_01020"
     CDS             complement(14216..14620)
                     /locus_tag="VD968_01020"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE13002.1"
                     /translation="MTKPPNGKPTILVVDDFDDIRDALRLVLEGRGYSVVAAQDGRQA
                     LHVAKEALPSLILMDLFMPKQDGFAAARAIRAEPELRGVPIVAVSAYGELGIEDELQK
                     KARAAGFNAYVAKPFDARELMTLITELLAEND"
     gene            complement(14681..15310)
                     /locus_tag="VD968_01025"
     CDS             complement(14681..15310)
                     /locus_tag="VD968_01025"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:NF014453.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HYE13003.1"
                     /translation="MRRFSKSFLFAKRAVDLVVASLALVVLSPLMLLIAVLVKLSSPG
                     PVLFRQRRLGRGGRPFVMYKFRTMLHNAPMVRNPDGSAFVGAGDPRLTRIGRLLRDYT
                     LDEIPQIFNVIKGDMSVVGPRPDLVEQLELYDDLMRRKLEVKPGMASLSLVHGRNSLP
                     WYKRAELDVRYVDNCSLRYDAEVFLKAFVLVLLRRGVYYSEDYKGEIGG"
     gene            complement(15307..15984)
                     /locus_tag="VD968_01030"
     CDS             complement(15307..15984)
                     /locus_tag="VD968_01030"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019213 - deacetylase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HYE13004.1"
                     /translation="MTGESRKVVLVVAAHPDDEVIGAGGTIARHAAAGDDVFITILTE
                     GASVQFPGEEEKAALKKRQARAAAETLGAREIFFGDFPDQRLDSLPVLEVNRFVEGVA
                     RRVNPNVIYTHHFADLNADHRVAYEAAAVAARPFSLTSFERLLCYSVDTIPHAGRGVP
                     NWNVYSDVAETLELKLRAMALYETEVREPPHPRSIEAMRQMALRNGAMVGLRAAEVFQ
                     SVLEVRR"
     gene            complement(16010..17227)
                     /locus_tag="VD968_01035"
     CDS             complement(16010..17227)
                     /locus_tag="VD968_01035"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYE13005.1"
                     /translation="MSQKIKIVHASTVDLGILFLRPQLRALKEDGFEVHAMCADGPWV
                     PSFEEEGFKVHRIAVRREMSPAADLKLLRELVGILRRERYTIFHAHTPKIELFGQLAA
                     RIAGVPIVLYTNHGFIFRGEMGGAKRSLLKNLARFSGLVSDFTLSQSAEDVEHAVRER
                     IYRRARVAYLGNGIDITRLDARRFPPEQVRAKKRELGVPEGNAVVGMVGRYVWEKGYR
                     EFFEAAKLIADKRPNVTFLTVGAALASERDPVEFGELRRLGVEDKFVVLKDRKDMDEL
                     YSVMDVVALPSYREGFPRSLMEAAAMSKPAVATDIPGCREAVVEGRNGFLVPLKDSAA
                     VAEKVGALLDDPALAARLGRGGRELAEDRFDERKVVERLKACYAELLRRKLPAYRVER
                     QGAALKVSRAGAE"
     gene            complement(17224..>17497)
                     /locus_tag="VD968_01040"
     CDS             complement(17224..>17497)
                     /locus_tag="VD968_01040"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024914.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE13006.1"
                     /translation="RAVLEAMYMGKAVVATRVAGTAEQIVDGESGVLVPPGDAPSMAE
                     AILSLLRDAGRRAAMGRSAAERARAEFSKEKMRRRTAQVFRELLKR"
BASE COUNT         2774 a         6190 c         5796 g         2737 t
ORIGIN      
        1 cgccgtcgtc gagcagttcg cccaccaact gcacgtcgcc gtcgcgcgcg gcgaagaaga
       61 ggcgcgcgtg cctgagcagc cgggcgacgc cctcgtggcc cttcgacttc gctatgtcgt
      121 agcctgtctg gttgttgcgg ctgcgcgcct gcacctcggc gcccgcgtcg agcagagcct
      181 ccacgacggc ggcgtggcct gcgctcgccg cgtacatgag ggccgtgtag ccgaaggcgt
      241 cgcgcgcgtc cgtctcggcg cccgaggcca gcaaagcgtc cacgcgcgcg aggtcgccgc
      301 gggaggccgc gatcatcagc tctgtcacgc cgttattgtt aggtgccgtc atctgcgcca
      361 cggtagggct tcgtgcggtc ggcggccgcc gctttctgct gcggccctct cgcgaggcgt
      421 cagattgtat caccggccgc ccctttgcgg aacagggttc ttaacttttc cgacgccacg
      481 gtacggtcgc gaattgaccg gcgcgggcgc cctcgggcac actctagcgg tagccacccc
      541 gactgctcta gcggcttcaa ccggatagca tgacgaagtg cccgtctccc cggacaggat
      601 tcgcctcaac atgctttgtc gccactgcga acgtcccctc acgctgctgc ggctgaaatg
      661 ccctacgtgc aggacgcgcc agcccacatg gtacttgacg gcggcgctgc tctcggcggc
      721 cgcgttcgtc gcggtcgtct atgcgatact gcgccaacac tgaggccgtc gccatataaa
      781 aatgacgcgc caggcgcgcc cgcttatctc gggcgcgcgt tcgccgagcc atgctctaca
      841 acacgaagtc actctacacg cccgctctcg agccctacga gctgaatgag cgcgcgctca
      901 tcattgacac tgagacgctg ggcgccggcc ccaccgtcga gataatcgag gtggcgctcg
      961 cggactccga gggccgcgtc atatacgagt cgctcgtccg ccccgtcttc aacaggctcc
     1021 cgccaccctc gcgccacgag aggttcccgc gcgcggagat cgagtcagcg cccgagtggc
     1081 cggcggtgtg ggaggagttg gcgccgctcg tggacaacag gctgctcgtg gcttacaacg
     1141 cggccttcga ccgccgcgcg ctggccgcca cctgctcgcg ctaccggcag cgcacggccg
     1201 agcggggctg gcgctgcgtc atgcagctcg ccaagcgcct gatgggggcg aagaagtccg
     1261 tgacgctcga agccgcgtgc gcgcacttca gcgtcgaggc cggcaaccac cgggccgccc
     1321 gcgacgtgcg ggccacgcac gcgctgctca tggcgctcct gaaggagtcg ccgcccggcg
     1381 gccggtagaa aaccatttgc catgcgccgc ccggcggtgg tagaacttcc gagcccgcag
     1441 tctccccgaa ggcgctttcg ccccgccccg aagccggggc ttcaccccgc gtgtaaaaga
     1501 tgagaaagag actcctgctc ctgactgccc ttgcggcgct gtgcgcgctc gccgcgctcg
     1561 gctggccctc gcgcgctcac gatggcgagc accacagccc cggcggcaac ggccagcccg
     1621 gcggcgcgcc gctcgccgct cagggcttta cgccctgctt gaacggcgcg gccggcacct
     1681 tcccttgcag caacgttgac ctcgcctcgc tcctgcccat cgcggacata gacggcacgg
     1741 acgcggcggg cgtcacctcg aacgacgtct ggggctggac tgaccatcag acgggcaagg
     1801 agtacgcgct gctcgggctc tcgaacggcg tcgccttcgt ggacatcaca gacccggcga
     1861 gccccgtcca cctcggcaac ctcccgacgc acagcgtcaa ctcgctctgg cgcggcgtca
     1921 aggtctatcg cgaccacgcc ttcgtcatca gcgaggccgc gaaccacggc ctccaaatct
     1981 tcgacctgcg ccagctccgc ggccgcaccg caccggccgt caccttcggc gagacggccc
     2041 attacgacaa cgtcagcagc acgcacacca tcgccgtcaa cgaggagacg ggcttcgtct
     2101 atctcgccgg cagccggccc aacccgaaca agacggtcgg cgttgaaacc tgcggcgggc
     2161 gcggcctcca catggttgac gtgcgtaacc cttcttcgcc agccttcgcc ggctgcgttg
     2221 actcagacgg ctacacgcac gagacgcagt gcgtcatata ccgcggcccc gacgccgcgc
     2281 accgcgaccg cgaaatctgc ttcagcgcca acgaggacac cgtcaccatc gttgacgtga
     2341 cgaataaggc caaccccgtc cagctctctc gcacgacata cgccggccgt ggctacacgc
     2401 accagggctg gctgaccgac gaccacaaga actttcttct taatgacgag ttggacgaga
     2461 cggggcagca cgtcaacacg cgcaccttcg tctgggacgt gaccgacttg gacgcgccct
     2521 tcgtcaagaa cgtgcagacg ctctcgacca cggcgattga ccacaacctg tacgtccgcg
     2581 gccgcttcgt cttcgagtcg aactaccgca gcggcgtccg cgtcctcgac accgccaacg
     2641 tcgccgcctc gggggcgttg agcgaggtcg ccttcttcga cgtttacccc gcggacgacc
     2701 agcccctttt caacggcact tgggccaact acccgttctt cgccagcggc accgtcatcg
     2761 ctagcggcat ggagcagggc ctcttcgtcc tcaagcctcg cgtcggcctc cccgtccaca
     2821 ttgactacac gcccttcttc gtccgccagc actaccgcga cttcctatcg cgcgaacccg
     2881 acgagggcgg cctcgccttc tggtctcacg agatcgccgc ctgcacgacc gacgctcagt
     2941 gcgccgaggt gaagcgcata aacgtctcgg ccgccttctt cctctccata gagttccagc
     3001 agaccggcta cttggtctat cgcttctaca agtcggcctt cggcgacatg ccgggcgcgc
     3061 ccgtccccgt caggcgcgaa gagtttttgc ccgacacgcg gcgcataggc gagggcgtgc
     3121 gagtcggcat tggcgactgg gccgcgcagc tcgaagccaa caagcaggcg ttcgcgctcg
     3181 agttcgtctc aagacagcgc ttcgccgacg ccttccccgc cgcgatgacg ccggccgagt
     3241 ttgttaacaa acttaacgcg aacaccggct tcgctctgac ccaggcggag gttgacgcgc
     3301 tcgtcgcgga gctttcggcc gacaacacga acgccgggcg cgcgagcgtc ctgcgcaagg
     3361 tcgcggagaa cgcggagctc gcccggcgcg agttcaacaa ggctttcgtc ctgatgcagt
     3421 acttcggcta cttacagcgc aacccgaacg acgcgcccga caccggcttc ggcggcttca
     3481 acttctggct cgggaagctc gacgagttcc agggcaactt catacaggcc gagatggtca
     3541 aggccttcat cacctcaatc gagtaccggc agcggttcaa ccagtgaggg gcgagtggag
     3601 ggctcacgca ggccgggcct gaagaccctg acgcgctggg cgggccttaa atgcccggcc
     3661 tgcggcgtag cttccatagt cgcgcggccc ttccagataa agcaccactg ccccgcgtgc
     3721 cgcgccctct tcaagcgcga ggacggcttc ttcgtcggcg cgctcgccat aaacgtcgtg
     3781 acgacggagt tcgtcatcct cgccacttac gtcgtctcga tcttcttcgt cgggcagaac
     3841 ttcaacgcac tcatctacgc cctgctggcc ctggccttcg ccttccccgt cgccttctac
     3901 caccacgcat gggccgcatg gctcacgctc gaccacatcg tagagtcgct gcccacgcac
     3961 gccgaaggcg gcgcgccccc ggcaaaataa atgcgccacg gggcgcgtgt gtaagtttga
     4021 aagggccgcc gcgccgagcg gcggccgtca gcctctatga tgctggcgca atatcagccc
     4081 ggcggcgccg ctttgaaaat caccgtccgg ccgtataatt cggtacggcc ttaacccagc
     4141 gaagccagag aggtgaaaga ctttgagagt gacactcgcg ctcacgctcg ttttaatcgt
     4201 cgccgtgctc tcgtcggcgc agacgcgccg ccggggcgcg gccgcgcagg cgccgcccgg
     4261 gggctactgg ccgccggaga aggcccggca gctcctcgag aagacgcaga ccgttcgcct
     4321 cgcgcccgac ctctcgcacc tgaccacggg cgagcgcgcg gccgtcgcga agctcctcga
     4381 agtcgggcgc atattccagt cgctctacga gcggcagcgc cacgagcgcg cgctcgaagc
     4441 ttacgcggag cttgcacgcc gccggggcgc aggcgcgcgc gacctgctag acatctaccg
     4501 cctcttccag gggcctatcg cgaccacgct ggagaacaag cgcgagccgt tcctgcccgt
     4561 cgccgcgacc gtgccgggca agaacgtcta tccgtggggc gtgactaagg ccgaggtcga
     4621 aagcttcctc gcctcgcgac ccgacaggcg cgactcgata ctcgacgcgc gcacggtcgt
     4681 ccgccgcgcg acggcgcctg agcttcgcgc agacctcgcg tcgctcaggc gccaccccgc
     4741 tctcgacgcg ctacagccgg gcctgcgccg cgagcttgaa agcctgctca ggcgccccga
     4801 cccggagggc ttctacgccg tcccctactc ggtcgcatac gccgacgaga tggtgcgctc
     4861 gcacgcgctc ctgaacgaag ccgcggacgc cgtgcagaga gacgacgagg agttcgcgcg
     4921 ctacctccgc aaccgcgcgc gcgacctgct ctcgaacgac tacgagtcgg gcgacgcctc
     4981 ctgggtaacc gggcgcttta agaaccttaa cgcgcagatc ggcgcctacg agacatacga
     5041 cgacgagctg ttcggcgtga aggccttctt cgccgtcagc gtcctcgcca cgcggcgtga
     5101 ggagaccgag gctctgcgca gcgccatgcg cggcttgcag gctctggagg actccctgcc
     5161 atacgagcgg cgcaagaagg tcagggagga catacccgtc ggcgtctatg acgttgtcgc
     5221 agacttcggg caggcgcgcg gccccaacac cgctaccatc ctcccgaacg aggcgtacct
     5281 cgcccgacgc tacgggcgaa cgatacttct gcgcgccaac atcatgcgca accccgagct
     5341 gttccagtcc acggggagcg cgtgggaggc ggcagtcgcg ccggcgcacg ccccggagct
     5401 tacgcccgac ggcaacttct accgcacgct ctggcacgag gtcggccact acctcggcgt
     5461 tgacaccacg cgcggcgggc aggacttgga cgcggccctg caggagaatg cgagcctgct
     5521 agaagagatg aaggcagacc tcgtctcgct cttcgtcgcg gaggcgctgc gcaagcaggg
     5581 ctactacacg gccgggcagt tgcgctccgt ctatgcgagc ggcgtcaacc gcgtcctcca
     5641 gaacaaccct ccgcgccgcg accagccgta ccagactatg cagctaatgc agtggaactt
     5701 cttcctcgag cgcgggctgc tctccttcga ccgccagtcg cagaggctgc ggatcaacta
     5761 cgacaagtac cacgacgttg tgggcgacct cctcaagcag gtgctcgaag ttcagtacga
     5821 gggcgaccgc gcggcggccg accgcttcat agagcgctac gctaagtggg acgagccgct
     5881 gcacggcgcg gtcgcgaaga acatacgcga ccgccagcgc caccgctttc gcctcttcag
     5941 gtacgccgcc ctcggcgagt gacacgcagg gccgcgcgcg gcgccgtaaa agagaaggcc
     6001 gggtgacgag aaagggcaat tccttcctcg tcacccggcc ttgcgcttga cagcgtggct
     6061 gccttcgctg actaggcggc gtaatttgcg ccgccgtccg tgaggctgcg cggcgccgtg
     6121 tgctgttcga ggagctcgac gattgaggcg tggccgtggg cgcgagcgat gtcgagcgct
     6181 gtctcgccga ggcggttgag ggcgcgcggg tctgcgccgc ccgcgagcag ctcggcggcg
     6241 acttcgaggc tgccctcgca cgccgcggcc gcgagcgcag tccagccccc ggcgtcggcc
     6301 gcctccgggt ctgccccggc cgcgagcagc agccgcgtgg cttcggcgtc gccgagcgag
     6361 acggcgaagt gcagtgccgt gcggccgtcc gccgttcgcg cgcgcgggtc tgccccggcc
     6421 gctaaaagga ggcggacgac ctcggcctcg cccgcgaagg cagccgcgat gagcggagtc
     6481 cagccgctgc ccggcatgcg cgccgaagcg tccgcgcccg acgcgagtag ttccttcacg
     6541 cccgcggcgt cgccctcgcg cgaggcggcg agcaaccgtt tgtccgtccc ggcgagcgcg
     6601 gccgacgccc cgtgcgactc aggccctgct ccgccctcct catcgtcgcg cctgagcagc
     6661 gcgacgacct ggccgtggcc ttcggctgag gcccgctcta gcgccccggc gccggcggag
     6721 tccttcgctc ccctgtccgc gcccgaggcg agcagtagcc gcacgacctc cacgtgcccg
     6781 cccgccgccg cgtacacgag cgcggtcgtg ccgaactggt cgcgcgcgtt cacatcggcg
     6841 ccgccctcct cgatgagccg gcgggcggcg cggtagtcgc cgcgcgacgc ggccttcatc
     6901 aactctgtga caggcccttc agcccccgtc attctttcgg ctccctcccc gccgtcagtc
     6961 atagcttctt catgccgaag cggtcgagcc agaggctccc gaacgcgggg cagggcaggg
     7021 ccgtgcactc ctgccgccgc acgaagacta aaacagcgcg cgcgccttcg ggcgccgcga
     7081 actcgagcga gaagtcgcgc cagccttcgg tcgtccccgt cggcagcggc tcggccgagg
     7141 cgagacgcct gccctcgtgc tcgccctccg cgagcgagac gcccacgagc acggggccgc
     7201 cagtgacgag gttacgcgtg cgcgcggaga actgcagccg gtagcgagcg cccggctcca
     7261 ccaggacgag ctgcgacaga agcctagatg atggctcgaa gttgccggcc atctctaacc
     7321 gcagcgagcg tgcgccctcg cgcggcccct gcgtgtcgag cgaggcgcgc accgtctcga
     7381 ccttgtcggc gaaccgccag ccgaagccgc cctcgtctgt gcggtgcgta gcctcgaagc
     7441 cgccgtctgt caactgcccc gccccgctgc ccccgcccca gacttcgtgc gcctcggcga
     7501 agccgcccgc cttgatcaac tccgcgacga ccgtgcggcg cgcgccttcg ggtagccgcg
     7561 aggccgcctc gcgatagacc ttcacggccg ccgcaggctc gccgctccgc gcgaggaagc
     7621 gcgcgagcgc gagcgactct tcggggtcgc gcggccgcgc gacttccatg accgcgcccg
     7681 cgtccttgcc ggagacgtgc cagacggcct gcaaaaatgt gcggtagagc ttagggtcgc
     7741 tctcggcggc cgcgcgcatt tcggccagcg cctcgtcaag ccggcccgcg cgcagcagag
     7801 tgttgccgag ctgccagcgc ggctgcgcgt agaagggagc cagccgcgcc gactcgcgga
     7861 aggccgcgag cgccccttcc acgtcgcccg cctgctcgcg cgccttcccc agctcgagcc
     7921 agacgacgta gtcggacggg cgtagccgaa gggtctgctc atacgcgcgc gcggccccag
     7981 cgtagtcgcc cgaggccgtc agcagcccgg cgagcgcgta gtgagactcg gggtctgacg
     8041 gcgagagttc gacggccagc ccgcccgcgt cgcgcacgcc cgacctcacg ccgtagtccg
     8101 cgacgagacg agcaagccct gccctcccta cccaccacgc gcaagaggag aagagcagca
     8161 gggccgcggc cgcggaggcg agcacgaggg ccgtgcgccg cgccggtctg gtttcggtcg
     8221 tctgttcggg ggtcacgcga gaagggtgga ggcgccgccg ggggcgggct taaaaactac
     8281 cgtcccctca gaacccgaag attctgaggg gacagggttg tgaacgagaa gtttgtttcg
     8341 cgccggggcc gcgaccgctc agtcgcggca ctcgtcgttg cgcccgcgcg gcgtgccggg
     8401 gctcgggttc gcgccgcggc ggcacgggac gacgatggcc gccgtgatga ggccgcccgc
     8461 gccgagcagg ccgccgacga ccgcgccggt gctgatgccc gcggccgtac ccgctattac
     8521 gaccggcgcc gcgatggcgc ccgcgccggc agcagcagcc gcgcccttgc cgatgatcgg
     8581 ggcgccgccg gagtcggacg cgcagacgtc aaccggcccc ccgccgttcg ggtcagagat
     8641 gacggcgccg ctagcctcga ctacgaccgg agtccccttc gacggataga cgatgacgca
     8701 cccgcggttg accttcacgt ggatgcggtt gccctcgaag gtgatgacca cgtcggcgtt
     8761 cggcgcgatg tcaacgcggc cgagcgggcc gaggtcaacg gtcgcgcccg tccccgcggg
     8821 cgtctgaatc gcctggcccg agaagatggt gtcgccggtc ttgacctggt tgccgccggc
     8881 cgtgatgggc gcgtcgttgc gagttgtcag gcgcccctgt gcctgcgcgg ccggcgagcc
     8941 cgcgagccgg gccgacgccg cgcgcaggag gtctgcctgt acgtaaacct gcgtgagcgc
     9001 tacggtcagc actagcgcga agactttggg ccaacgattc ttgagggtgg tcatatagtt
     9061 ttatctccga ccttcctggg ggaaaaggtc tgcatgtccc ccatcctaaa tgccacgcgg
     9121 attttagccc cgcaggccgt ttttaacaat accctgaagg gctagttttt tggcgccggg
     9181 cgcccctaag cgccgggagc gcggccgtta agcgtaaggc gcggcggcgc cctcctccgg
     9241 aacgtccacg gccgccacga ccgagagcac gacggcgagc gccgcgttca ccgttatgtg
     9301 cagcccgaag tcaacgaggc tgtggacggc cacgccgaag aggcccacga gcgccccgag
     9361 gcaggcggcg cgccgaaacg tgccgccccc ggcgagcgcc gccctcgccc gccgcagcac
     9421 ggacagcacg agccagacga caagccccgc gcccactatc ccgccgccgg cgagcaagtc
     9481 taggtagtcg ttgtgcgcct gctgcggcac gaagtcgccc gaggcgtcgt ggtggcgcgt
     9541 tatcgccgtc cagtagccgc cgaaacccac cccggccacc gggtgctcgg cgaagagctt
     9601 ccacgtcgag cgccagatgt ccgcgcggct cgtgttcatg cgcgggatca tctgctccat
     9661 ctcgcccagc tcttccggca cggtgctcag gttgctgacg acgggctcgc cgcccaccca
     9721 aacgaccgcg agcacgacag ccgcggccag cgccgtcgaa agcccgacgc gcgccgcggc
     9781 ggagccgagc gccgagcgcc agccgccccc cacgcgcggc cccgtctcgc gccccccgcg
     9841 cgcggccagc agcgacggcg cggccacggc ggcgaagaag aggagctggc acagcagcgt
     9901 cagcacaccg ccgcgcgagt tggcgagtat gagcgcagcg ccgatgggca gcaaagccgc
     9961 gaggtagaag agccgccagc cgggccggcc ccagcgcgcg gccgccaggc agagcgccgg
    10021 ccccagcgcc atctccatca tgaagcagaa ctggttgcgg cttatgaact gcgcgtagcc
    10081 ctcgccgcgc acgaggtgcg ggagcaggaa gccctcgccc tcctgctgcg tggcctgccg
    10141 cagtatgccg aagagcgcgc tcgcggcgcc gacgccgacg acggcgatca ccatcgcgtg
    10201 cagcctgccg cgcgccctcc cgaagcgcag cagtatggcg ccgagcaacg tgagcgccgc
    10261 caccttcgcg gcgaagaggc gcgtctcgaa ggggtctgcg cttatggcgc cagcggccgc
    10321 gccgagcggg agcgtctgga agagcgcgaa gagcgtaagg gcgaccgcgg ggagcaggag
    10381 gagcaggtcg cgccgcccga ggccccagcc gcctgtcaag accgcctcga cggcccagag
    10441 acacccgagc gctaacgccg ccgagacgaa ggccgcctcc caccacggct caatggagcc
    10501 gtagggaacg gccgacgcag cgaccagcag gagcgcgcag tagaagacga agcgcccgag
    10561 caggctcgcg ggtcgcgggt cgcgggctgc ggactgcgga ctgggtgagg ccgcgcctgt
    10621 catcaacttc gtcaacccgc agtcttcttc acgcgaaagt cttggcggcg gcgagccgcc
    10681 cggcctcggc gccctgcact tcggccggct cgtctccgcg cgcctcttcg tcgtccgcgc
    10741 cgccgagcgt caggttcgac tcgggcagca ggtcgctcac gtatcggcgt atggcctgct
    10801 cgtcgccgcg ggccgaaagc tcggagagcc gcgccagcgc ctcgccgacg accgtctcgg
    10861 cgtaggtctg caccttgcct atgaaaattt tcgggtggcg ggtcttggtt atctgctcct
    10921 cgttgaaggc cagctcctcg aagagtttct cgccggggcg catgcccgtc acgaccacgt
    10981 ctatgtcctc gtagggcttg tagcccgaga gggtgatggt gtcgagcgcg aggtcgagaa
    11041 tcttcacggg ctcgcccatg tcgaggatca ggatctcgcc gccctggccg atgccgccgg
    11101 cctgaaggac taactgcgcg gcctcgggga tggtcatgaa gtagcgcacc atgtcggggt
    11161 gcgtgacggt gacggggccg cccttgcgta tctgctcgcg gaagatgggg atgacggagc
    11221 cggccgagcc gatgacgttg ccgaagcgca cggagacgta gcgcgtggcg tagcgcccgt
    11281 tgaggctctg cgcggccagc tcggccatcc tcttcgacgc gcccatcacc gacgttggcc
    11341 gcaccgcctt gtccgtagag atgaggacga agacctcggc gccgaactcg ccggctagcc
    11401 ggccgacgtt gtgcgtggcg agcacgttgt tcttgacggc ctcggtggcg ttgctctcca
    11461 tcatggggac gtgcttgtgc gcggcggcgt ggaagatgac ctgcgggcgg tactcctcca
    11521 ttatgttgcg catcctcgac tcgtcgccca cgtcggcgat gagcgggacg atggggaagc
    11581 cgtcaaccag ctcgcgcacc tcgcggtcta tctggaagag cgccggctcg gccctctcga
    11641 ccagcagcag gcacgacggg ccgaagcgcg ctatctgccg gaccagctcg gagcctatcg
    11701 agccgcccgc gcccgtcacc atcacggtct tgccgccgag gaaggagcag atgccctcga
    11761 tgtccaggtc aacggggtcg cgcccgagca ggtcttctat ctgcacgtcg cgaaggcggc
    11821 tgacctcgac gtggccgagc agaatctcgt agaggccggg gatgacgcgc accctcacgg
    11881 gtatcttctc gcaggcgcgg acgatgcggc gtatgttgtc gcgcgaggtc tgcgcgatgg
    11941 tgattacgac gtggtcaatg cccagctcgc gcacgaggcg gggcaggtcg tcggtcgtcc
    12001 cgagcacggg gatgcggctt atgaccttgc cgtgcttgct gaggtcgtcg tccacgaacc
    12061 cctttatgtc gagattcatg tcgccgcgcc cctgtatctc gcgggcggcc agcacgcccg
    12121 cccggccggc gccgatcagc agcacggcct tcctgccggc ggccggggcg gcgctctgcg
    12181 cgcgctcgcc gttctcccgc cgttgcttcc actcgtccac ggcgcgccgc gctatgcgga
    12241 ggcccagcac tccgccgaag ccgagccccg cgtctatcag cgctatcgag agcggcacgc
    12301 gccagtcgtt cggcacgggc gagggtagca ggcgcaccaa caacagcagc ccgcaggagg
    12361 cggccgccgc cctcacgaag ggccctatct cggacatccc cacgtagcgc cagatgaggc
    12421 gatagccgtc gaagtaccac agcatgagca tctggagggg gacgacgtag gccgcctgcc
    12481 tgagaaggtc ggccgcgttg tcccagcccg gcgcgaagtc gaagcgcagc aggtaggcca
    12541 gcgcgagcgc cagcaggaac gtcaggaagt ccagggcgaa gtgaatcctc cgccgcgtga
    12601 tgtacctcct cacgcgcggc gagttgagca cctcgttaaa cttggcgccg tactcgttta
    12661 gtgtcctgct gacaaagctg tcgtcgtcgg gagttgatcg ggtcgtcatc gcggccggag
    12721 ttccttttga ggttaaaagc gaggcaaaat ttgtcgggaa aagccggccg ggcgcaggga
    12781 gtgctgcccg gctggcgaag cggccttaat gaaattaact ccgcgcggct gcgcgtcgaa
    12841 gttctggaag aactaaggac tggcgctttg agccggggcg ccggcgaagt tgcgccccgt
    12901 cgcctttccg tgtgcagggg gaagtgtatt ccaacaggcg ccccgacaca agtgttaaaa
    12961 ttctctccga acgcgcccgc gccggctacc gcctgaactt cccgaccacg tccgaaacgg
    13021 cctctatcac gtcctccacg tcgcggtcgc tcatgcgcgg gtttaagggg agcgacacca
    13081 tgcggcggaa ctcgccgtag gccacgggga agtcttcggg gcggtagccg tacttgtcgc
    13141 ggtagtaggg gtgcgtgtgg acggggatga agtggacgct ggtgcctatg cgccgctcct
    13201 tcagctcctc tatgaactgc tcgcgcgtaa tcgtcagccg ctccaacttc agccgcacga
    13261 cgtagaggtg ccaggcgtgc ccgacctcgg ggcggcggcc gggcagcgtc agctcctcga
    13321 ttcgggagaa cgcctcgtcg tagcggctca ctatctcggc gcggcgacgc tggaacgagt
    13381 cgagcttgcg tagctggtgc agcccgagcg cggcctgtat gtcggtcatg ttgtacttga
    13441 agccggcccg cacgacctcg tagtaccagg agcccttctc gccgtagcgg ttccaggcgt
    13501 cgcggctcat gccgtgcagg ctccacacgc gcgcctcgtc aacgagcgcc tgcggccccg
    13561 tgagcatccc gccctccgcg gtcgtcaagt tcttcgtggc gtagaaggag aagcaggtga
    13621 agaccggcac gtccccgtag tgcgacgcga aggagccgac cgtgcgcccc tcgtgcgagg
    13681 cgggcagcgc gtgggcggcg tcctcgacga cggcgagcct gtggtcgcgc gcgagcgcca
    13741 tcagggcgcc catgtcgcac gggtggccgt agaggtggac gggcagcagc gccctgacgc
    13801 gcccgcccga ctttatcacc gactcgacgg cctcctcgac gcgcgcaggg tctatgttga
    13861 gcgtgtcggg cgaaacgtcg gccatcaggg gccgcgctcc cgtgtgctct atgacgtgga
    13921 cgctggagca gaaggtcagc ggcgtcgtga tgaccgtgtc gccggggccg acgcccaagg
    13981 cggccagcgc cacgtgcagg gcggccgtgc aggagttcag ggcgagcgcg gcgggcgcgc
    14041 ccacgtactg cctgaactcc tcctcgaagc gcttgacctt cggccccgtc gttatccagt
    14101 cggtgcggag cgtgtcaacg acctcggcga tctcctcctc gccgatgagc ggcggtgaaa
    14161 acggaagaaa ggtttctctc acttggtatg ccctttgaag tttggagtag gggtttcagt
    14221 cgttctcggc cagcagctct gtgatgagcg tcatcagctc gcgggcgtcg aagggcttgg
    14281 cgacgtaggc gttgaagccg gcggcgcgcg ccttcttctg caactcgtcc tctatgccca
    14341 actcgccgta ggccgagacg gcgacgatgg ggacgccgcg cagctcgggc tctgcgcgta
    14401 tggcgcgcgc cgcggcgaag ccgtcctgct tcggcatgaa caagtccatg aggatgagcg
    14461 agggcagcgc ctccttcgcc acgtgcaggg cctggcgccc gtcctgcgcg gccacgaccg
    14521 agtagccacg accctcgagc acgagccgca gcgcgtcgcg tatgtcgtcg aagtcgtcaa
    14581 ctacaaggat ggtgggcttt ccgttggggg gtttcgtcat ttatgcctcc gtcacacggg
    14641 tcattccgtc ccctggctcg gccccgcgtt cgaggcggcg tcagccgcct atctcgccct
    14701 tgtagtcctc ggaataatag acgcccctgc gcagcagcac gagcacgaaa gcctttagga
    14761 agacctcggc gtcgtagcgc agcgagcagt tgtccacgta gcgcacgtcc aattcggcgc
    14821 gcttgtacca cggcagggag ttccggccgt ggacgagcga caggctcgcc atgcccggct
    14881 tgacttcgag cttgcgccgc atgaggtcgt cgtaaagctc gagctgctcc acgaggtcgg
    14941 gccgggggcc gacgacgctc atgtcgccct ttatgacgtt aaagatctgc ggtatctcgt
    15001 cgagcgtgta gtcgcgcagc aggcggccta tgcgcgtcag tcgcgggtct cccgcgccga
    15061 cgaaggccga gccgtccggg ttgcgaacca tcggcgcgtt gtgaagcatc gtgcggaact
    15121 tgtacatcac gaacggccgg ccgcccctgc ccagccgcct ctgcctgaag agcacggggc
    15181 cgggcgagct gagcttcacc agcacggcta tcaggagcat gagcggcgag agcacgacga
    15241 gcgcgagcga cgccactacg aggtcaaccg cgcgcttcgc gaacaggaaa gatttgctga
    15301 accgcctcat cgcctgactt ccagcaccga ctgaaaaact tccgccgccc gcaggcccac
    15361 catcgcgccg ttccggaggg ccatctgccg catcgcctcg atggagcgcg ggtgcggcgg
    15421 ctcgcgcacc tcagtctcgt agagcgccat cgcgcgcagc ttcagctcca gcgtctcggc
    15481 cacgtccgaa tagacgttcc agttcggcac gccccggccg gcgtgcggga ttgtgtcaac
    15541 cgagtagcag agcagccgct cgaaggacgt taggctgaag gggcgcgcgg cgacagccgc
    15601 ggcctcgtag gcgacgcggt ggtctgcgtt gaggtcggcg aagtggtgcg tgtaaatgac
    15661 gttcgggttg acgcgccgcg ccacgccctc gacgaagcgg ttcacttcga ggacgggcag
    15721 cgagtcgagc ctctggtcgg ggaagtcgcc gaaaaatatt tcgcgcgcgc cgagcgtctc
    15781 ggccgcggcg cgcgcctgcc gcttcttgag cgcggccttc tcctcctcgc cggggaattg
    15841 cacgctcgcg ccctcggtca ggatggttat gaacacgtcg tcgcccgctg cggcgtggcg
    15901 cgcgattgtg ccgcccgcgc ctatcacctc gtcgtccggg tgcgccgcga cgacgagcac
    15961 gacttttctg ctctcgcccg tcaactcttt tgtagcccct ctctgtcttt tactcggcgc
    16021 ccgcgcggct cactttgagc gccgcgccct gccgctcgac gcggtaggcc gggagtttgc
    16081 gccgcagaag ctccgcgtag caagccttca ggcgctccac caccttgcgc tcgtcgaagc
    16141 gatcctcggc cagctcgcgc ccgccgcgcc cgagccttgc tgcgagcgcc gggtcgtcca
    16201 gtagcgcgcc gaccttctcg gccacggccg ccgagtcctt tagagggact aggaagccgt
    16261 tgcggccctc gacgacggcc tcgcggcagc cggggatgtc cgtggcgacg gccggcttcg
    16321 acatggcagc ggcctccatc aggctgcggg ggaagccctc gcggtaggac gggagcgcca
    16381 ccacgtccat caccgagtaa agctcgtcca tgtccttcct gtccttaagc acgacgaatt
    16441 tgtcttcgac gccgagccgg cgcagttcgc cgaattcaac gggatcgcgc tcgctcgcga
    16501 gcgccgcgcc gaccgtgagg aaagtgacgt tcggcctctt atcggctatc agcttcgcgg
    16561 cctcgaagaa ctcgcggtag cccttctccc agacgtagcg gccgaccatg ccgacgaccg
    16621 cgttcccttc gggcacgccc agctcgcgct tcttggcgcg aacctgctcg ggcgggaagc
    16681 ggcgcgcgtc gaggcgcgtg atgtctatgc cgttgccgag gtaggcgacg cgcgcgcggc
    16741 ggtagattct ctcacggacg gcgtgctcaa cgtcctcggc gctctgcgac agcgtgaagt
    16801 cggagacgag gccggagaag cgcgcgaggt tcttcaaaag cgagcgcttc gccccgccca
    16861 tctcgccgcg gaagatgaag ccgtggttag tgtagagcac tatggggacg cccgcgatgc
    16921 gcgcggcgag ttggccgaac agctctatct taggcgtgtg cgcgtggaag atggtgtagc
    16981 gctcgcggcg aagtatgccg acaagctccc gcaggagttt caggtcggcc gccgggctca
    17041 tctccctgcg gacggcgatg cggtggactt taaacccctc ctcctcgaac gacgggaccc
    17101 acgggccgtc ggcgcacatg gcgtgaacct cgaagccgtc ctctttgagc gcgcggagtt
    17161 gcggccgcag gaacagaatc cccaggtcaa cggtcgaggc gtggactatc tttatcttct
    17221 ggctcatcgc ttcaaaagct ctcggaagac ttgggccgtc ctccgcctca tcttctcctt
    17281 gctgaactcc gcgcgcgcgc gctcggcggc gcttcggccc atcgcggcgc ggcgcccggc
    17341 gtcgcgcagg agcgacagta tcgcctcggc catgctcggc gcgtcgccgg gggggacgag
    17401 cacgccggac tcgccgtcaa caatctgctc ggccgtgccg gcgactcgcg tggcgacgac
    17461 ggccttgccc atgtacatcg cttcgagcac ggcgcgc
//
LOCUS       DASPKR010000035         2028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_651336, whole genome shotgun sequence.
ACCESSION   DASPKR010000035 DASPKR010000000
VERSION     DASPKR010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2028)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_651336"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VD968_01045"
     CDS             <1..240
                     /locus_tag="VD968_01045"
                     /inference="COORDINATES: protein motif:HMM:NF015289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HYE13007.1"
                     /translation="SLEGRKLLVIQSLDAHLRPQGAPLVALDAIGAGVSDLVFWCRGK
                     EASFPFRREDTPTDCTIVAIVDSDAHVTRGAGGRS"
     gene            237..542
                     /locus_tag="VD968_01050"
     CDS             237..542
                     /locus_tag="VD968_01050"
                     /inference="COORDINATES: protein motif:HMM:NF015289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031469 - bacterial microcompartment
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HYE13008.1"
                     /translation="MILARVLGNVVATQKNARYGGARVMMCQPVTPAGEETGATVLAL
                     DSVDAGVGDTVLIVQEGWGASTAATGEAGAAIDSAIVGVVDYIDLLADEPTRRPLFE"
     gene            539..1024
                     /locus_tag="VD968_01055"
     CDS             539..1024
                     /locus_tag="VD968_01055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13009.1"
                     /translation="MSSSDQEQIRALAERVARRLASQANEAGAAGAAPHAADAGDLSA
                     VRDGLADIRRRLAHIESHIGHEESHGPGARSAGDAARTGSVGAQAHGADDARGQTPAT
                     SLWLSGTYVPATEHPSQERFGIDEAVSEMVDFFEREKTCNLEPGGKPCDHCGMCSSRG
                     F"
     gene            1075..1446
                     /locus_tag="VD968_01060"
     CDS             1075..1446
                     /locus_tag="VD968_01060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13010.1"
                     /translation="MKAYSLDLRQKVLAAALRGDRTIREVADSFGVGTTFVDKVLALH
                     RKGEDLAPRPHGGGYPARLLPRHGRLLRAEVRRRKDSTLEELRAHLAAEAGLVVSAAT
                     VSRALARLDLPRKKKSGGVGA"
     gene            1427..2017
                     /locus_tag="VD968_01065"
     CDS             1427..2017
                     /locus_tag="VD968_01065"
                     /inference="COORDINATES: protein motif:HMM:NF033545.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HYE13011.1"
                     /translation="MAASERNNYKRGWFRRRARRLRHRRFVFVDETAVNTAMTRRYGR
                     APRGERVHDSAPRNYGAHTSVIGALGLRGLVATLAVEGAVDTICFDAYAEHLLGPRLR
                     RGDVVVLDNLTAHRASRIEEVAASRGAQVLWLSPYSPDFNPIEQCWSKIKTFLRGAKA
                     RTAGALDEALAQAIGLVTQSDIRGWFKHCGYSLARK"
BASE COUNT          297 a          713 c          726 g          292 t
ORIGIN      
        1 tcgctggagg ggcgcaagct cctcgtcatc cagtcgctcg acgcgcacct ccggccgcag
       61 ggcgcgccgc tggtggcgct cgacgccatc ggcgcgggcg tctccgacct cgtcttctgg
      121 tgccgcggca aggaggcgag cttcccgttc cggcgcgagg acacgccgac cgattgcacc
      181 atcgtcgcca tcgtcgattc cgacgcgcac gtgacgcgcg gcgcgggagg gcggagttga
      241 ttctggcgcg cgtgctcggc aacgtcgtgg cgacgcagaa gaacgcgcgc tacggcggcg
      301 cgcgcgtgat gatgtgccag cccgtgaccc ccgccggcga ggagacgggc gcgaccgtcc
      361 tcgcgctcga ctcggtggac gcgggtgtgg gcgacacggt tctgatcgtg caggagggat
      421 ggggcgcctc gaccgccgcg acgggcgagg cgggcgcggc gattgactcc gcgattgtcg
      481 gcgtcgttga ctacatcgac ttgctcgcgg acgagccgac acggagacct ttgtttgaat
      541 gagcagtagc gaccaggaac agattcgcgc gttggccgag cgcgtcgcgc gccgcctcgc
      601 ttcgcaggcg aatgaggcgg gcgcggccgg cgctgcccca cacgccgccg acgccggcga
      661 cctctcggcg gtgcgcgacg ggcttgccga catccgccgc cggctcgcac acatcgagtc
      721 gcacatcggc cacgaggagt cgcacgggcc gggcgcgcgc tcggcgggcg acgcggcccg
      781 cacaggttcg gtcggggcgc aggcgcatgg ggctgacgac gcgcgcggtc agacgcccgc
      841 cacctcgctc tggctgagcg gcacctacgt gcccgccaca gagcacccga gccaggagcg
      901 tttcggcatc gacgaggccg tctcggagat ggtcgatttc ttcgagcgcg agaagacgtg
      961 caacctcgaa cccggcggca agccctgcga ccactgcggc atgtgcagct cgcgcgggtt
     1021 ctaaagcgtc ttacgcttga gtgcgggtaa aggcccgcgg taatctgccg cgccatgaaa
     1081 gcctattccc tggacttgcg gcagaaggtc ttagccgcgg ccctgcgcgg cgaccgcacc
     1141 atccgcgagg tcgcggactc cttcggcgtc ggcacgacct tcgtcgataa ggtactcgcg
     1201 ctgcaccgca agggcgaaga cctcgcgccc cggccgcacg gcggcggcta cccggcccgc
     1261 ctgctgcccc ggcacgggcg cctgctgcgg gccgaggtgc ggcggcgcaa ggactcgacg
     1321 ctcgaagagc tgcgcgccca cctcgcagcc gaggccgggc tcgtggtgag cgccgcgacc
     1381 gtctcgcggg ccttagcccg cctcgacctg ccgcgtaaaa aaaagtctgg cggcgtcgga
     1441 gcgtaacaac tacaagcgcg gctggttccg ccgccgtgcc cgtcgcttgc gccatcgccg
     1501 gttcgtcttc gtggacgaga cggcggtcaa caccgcgatg acgcgccgct acggccgggc
     1561 gccccgcggc gagcgcgtgc atgactcggc gccccgcaac tacggcgcgc acacctcggt
     1621 gatcggcgct ttgggcttgc gcgggttggt ggcgacgctc gccgtcgagg gcgcggtcga
     1681 taccatctgc ttcgacgcct acgccgaaca cctgctcggc cctcggctca ggcgcggtga
     1741 cgtggtggtg ctcgacaacc tcacggcgca ccgggcgagc cgcatcgagg aggtggccgc
     1801 gagtcgcggc gcacaagtct tgtggctgtc gccgtactcg cccgacttca acccgatcga
     1861 gcagtgctgg tcaaagatca agacgttcct gcgcggggcc aaggcgcgca ccgcgggcgc
     1921 gctcgacgag gcgctggcgc aggccatcgg gctcgtcacg cagtcggaca tccgcggctg
     1981 gttcaagcac tgcggctact cactcgcacg caagtgagaa ccgcttta
//
LOCUS       DASPKR010000036         7571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1428177, whole genome shotgun sequence.
ACCESSION   DASPKR010000036 DASPKR010000000
VERSION     DASPKR010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7571)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7571
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1428177"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            205..690
                     /gene="greA"
                     /locus_tag="VD968_01070"
     CDS             205..690
                     /gene="greA"
                     /locus_tag="VD968_01070"
                     /inference="COORDINATES: protein motif:HMM:TIGR01462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0006354 - DNA-templated transcription
                     elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HYE13012.1"
                     /translation="MTEAIKQKLQNELDELDTELRVHLPREIKRAKEFGDLRENAEYH
                     AALARQQFVQARIRDLRQRLSEVSSIDLSKIPRDRIAYGSTVVLYDSERDEDVTYRLV
                     TPEESDPNAGLISTTSPVGRSLMGREEGDEVKVVTPAGARKFEIKSLKTLHDEAAAGE
                     G"
     gene            757..2097
                     /locus_tag="VD968_01075"
     CDS             757..2097
                     /locus_tag="VD968_01075"
                     /inference="COORDINATES: protein motif:HMM:NF021982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13013.1"
                     /translation="MRKTLALVALLTLLAPAAAHAQKVSKETITFRDKKRAYYLFVPE
                     GLSAERPAPLVLLLHGSGRNGLSLVDKWKELAKKEGFVIAGPDSADSQGWWLPGDGPD
                     FLHEVTEQIKSKLPVNPRRVYLFGHSAGANFALLMAVIESEYFAAAAVHAGAMRPEGQ
                     RFIDRAARKIPVLIQVGTEDPLFPVSVVRETRDAFKSRGFDVRLTEIPGHTHWYYDRA
                     PSINAEAWGFLKAHELAAEPRYEPYGPAAGGKAGARTRKATDAYNSGVRRHQSGDLAG
                     AVADYTRALEADPDFADALTNRAAARLTVGETAAALEDLTRSIALDPNNAVAYMNRGI
                     AHRALKRPAEAVADHTRSLALKPSAEAFYNRAVVRQESGEEDLALEDYSKAILYDAKM
                     AEAYVNRGLILLRRGRDAEAQADFDAAFRLNPALRPQYEPHIKNTRLIRESQKP"
     gene            2241..2972
                     /locus_tag="VD968_01080"
     CDS             2241..2972
                     /locus_tag="VD968_01080"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HYE13014.1"
                     /translation="MFGASIGRGAGRIINAMVQGLALRHINPNLLTVTGVSINVLCGV
                     MFGLGHFFWAGIILIVANLFDMLDGAVARKTGQVTRFGGFLDSTFDRISDMAAFVGLM
                     VFYARDTEFHSTLNVLLAGLAMVGSVLVSYASARAESLIPKCDVGFLRRPERVVLLII
                     GALSTHPGSDSLFANRMPAVLWVLAVGSFWTFAYRMYHTWVEVSRADAAPAPEAEAPR
                     QTVPEASHVKAAAEPGVGTPAPRRG"
     gene            3015..3887
                     /locus_tag="VD968_01085"
     CDS             3015..3887
                     /locus_tag="VD968_01085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13015.1"
                     /translation="MTTCPCCGARFDGDLTVSPCGSCGARAVGPPLARPERELPSYGH
                     AFVITAAGALLAIAFAAAVAGALLRRETFSLGWRALVSAGEAAAWGMKWTALPLSLAA
                     AAVCGRLYRRMLRDRTRFVGFGAARAGLAATALTAALLVTLIGVSVPERLRRRELALR
                     AAENARLYAGDAALRRYRQRFGTYPASLADLRRLDDPDCSLAEALAAVGAAEYRPETD
                     LASLSAGRPKSRLRRRAGEARVRNASARADADDVPGAGLVLTNYRLTLPGRDGRLGTA
                     DDLLMRDGLIVAAP"
     gene            3899..4189
                     /locus_tag="VD968_01090"
     CDS             3899..4189
                     /locus_tag="VD968_01090"
                     /inference="COORDINATES: protein motif:HMM:NF023580.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3592 domain-containing protein"
                     /protein_id="HYE13016.1"
                     /translation="MGILDIFRRKKTDDEAERRTTLLRAGRITEGTIFDVITDEAGAI
                     TQVFYNYEINGVQFESSQLLDHEQRRRPGDYFPGARVTVRFNPRQPGNSLVV"
     gene            4247..5785
                     /gene="accC"
                     /locus_tag="VD968_01095"
     CDS             4247..5785
                     /gene="accC"
                     /locus_tag="VD968_01095"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HYE13017.1"
                     /translation="MFKKILIANRGEIAVRVLRACREMGVSPVAVYSEADAAALHVRL
                     ADEAYLLGPAPSVESYLRIDRVIDAALRSGAEAIHPGYGFLAENAAFARAVRGAGLVF
                     IGPSPEAMELMGSKTSARRAAIEAGAPVVPGATESLSSLDDARETAARVGYPVMLKAA
                     AGGGGKGMRLVASEAEIASAFETARSEAASAFGDESVYIEKAVERPRHIEIQVFADSH
                     GNCVHLGERECSVQRRHQKVIEECPSPIDEPGLRERMGAAAVGIARRCDYLGAGTVEF
                     LVSDVTREFYFLEMNTRLQVEHPVTELVTGFDLVREQIRVAAGEPLSFSQGDVQWRGH
                     AIECRIYAEDPEQNFLPSPGRITTLAGPGGPGVRYDGGFYAGAEVPIHYDPLIAKLAV
                     WGRDRREAIERMRRALGDYRIGGIRTTVGFFREVMRDEEFVSGRLDTGFIPRFNERRG
                     RAREEQTGGAGDETAERDIALIAAALEWEESGQRDSLQQQAAPEAAPSRWKAAGRAAL
                     HERL"
     gene            5801..6304
                     /locus_tag="VD968_01100"
     CDS             5801..6304
                     /locus_tag="VD968_01100"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HYE13018.1"
                     /translation="MKLLAEMEGEQVALEVRREGGRVVAEVGGRRYELEARSLGGGEH
                     LLTHDGRVYDCRVAGAARAGEFEVSFRETAYRVALSDPKRLRGARAAAGHDAGRSEVS
                     APMPGKVVRVLVSEGEQVEAGAGLVVVEAMKMQNELKSPKTGRVVRIAAQPGATVNAG
                     EVLVTIE"
     gene            6325..7038
                     /locus_tag="VD968_01105"
     CDS             6325..7038
                     /locus_tag="VD968_01105"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase-like hydrolase"
                     /protein_id="HYE13019.1"
                     /translation="MPDLRVLLWDIDGTLVRTRRQGLFQDYTAPVLMRVFGTEGRLGD
                     LRVSGMTDMQIAFEALRAEGYTPEQVLERAAEIASLFTAELERLAAGGEEIYYALPGV
                     REALEAVSRPGRYLSALLTGNVEPAARLKLRLVGLDHFFRLPGAFGEDSHDRRDLPRL
                     AHERISRHTGLDLHPSQFIVIGDTPNDIACARHYGARAVAVATGRSYSAEDLLAHSPD
                     AVLPDLTDTGLLLDTLERL"
     gene            complement(7047..>7571)
                     /locus_tag="VD968_01110"
     CDS             complement(7047..>7571)
                     /locus_tag="VD968_01110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13020.1"
                     /translation="ERPITRTDQVQIYEELVRDNDGLLTNSFVRLFEHAKDNRLLPRG
                     WSPEGPYAEFTDPKGEARRDPGYIPRDARAGSEGSNTVVYRVPLKGLKGEPASVQARL
                     LYQALPPYYLRDRFSILDKGLSEKQTRETRRLKYFADYLNVQGTAIQDWKLVLECSRR
                     SLADGRAQLCAAGS"
BASE COUNT         1185 a         2727 c         2530 g         1129 t
ORIGIN      
        1 ccgcaccgcc cgcgacgtgg gcgtctcctt cggcgcgccc gacgaggacg cgcaccacca
       61 gcacgaggag cggcaggagt gctgaagacg ggtggcgggt gataggtgac gggtgttagg
      121 tagaagcaag ctgtctttac ccgtcacccg tcacctatca cccgtcaccg cttttgcata
      181 taatccgccg aggagggaat ctcagtgacc gaagccatca agcagaagct tcagaatgag
      241 ctggacgagc tggacacgga gctgcgcgtc cacctgccgc gcgagatcaa gcgcgcgaag
      301 gagttcggcg acctgcgcga gaacgccgag taccacgccg cgctcgcacg ccagcagttc
      361 gtgcaggcgc gcatacgcga cctgcgccag cgcctgagcg aagtctcctc tattgacctc
      421 tcgaaaatcc cccgcgaccg catagcctac ggctcaacgg tcgtgctcta cgactcggag
      481 cgcgacgagg acgtgaccta ccgcctcgtc acgcccgagg agagcgaccc caacgccggc
      541 ctcatctcga cgacctcgcc cgtcggccgc agcctcatgg ggcgcgagga gggcgacgag
      601 gtcaaagtcg taacccctgc gggcgcccgc aagttcgaga taaagagcct gaagactctg
      661 cacgacgagg cggccgcggg cgaaggttga cccgcacgcc cgccgccgtc tcacccgtaa
      721 acagcttgcg cgcccactat cctgcgccgt aaggccatga gaaagacgct cgcgctcgtc
      781 gcgctcctga cactgctcgc gcccgccgcc gcccacgcgc agaaggtctc gaaagagacc
      841 ataactttcc gcgacaagaa gcgcgcctac tacctcttcg tccccgaggg cctgagcgcc
      901 gagcgccccg cgccgctcgt cctcttgctg cacggctcgg ggcgcaacgg cctctcgctc
      961 gttgacaagt ggaaggagtt ggcgaagaag gagggcttcg tcatcgccgg ccccgactcg
     1021 gccgactcgc aaggatggtg gctaccgggc gacggccccg acttcctgca cgaagtcact
     1081 gagcagataa aatcgaaact gcccgtcaac ccgcgccgcg tctacctctt cggccactcg
     1141 gccggcgcca acttcgcgct gctgatggcc gtcatcgagt cggagtactt cgccgcggcg
     1201 gccgtccacg ccggggcgat gaggccggag gggcaacgct tcattgaccg cgccgcccgc
     1261 aagattcccg tcctcataca ggtcgggacg gaagacccgc tcttccccgt ctcggtcgtc
     1321 cgtgagacgc gcgacgcctt caagtcgcgc ggcttcgacg tgcgcctcac cgagattccc
     1381 ggccacacgc actggtacta cgaccgcgcg ccctccatca acgccgaagc gtgggggttc
     1441 ttgaaggcgc acgagctcgc ggccgagccg cgctacgagc cttacggccc cgccgcgggc
     1501 gggaaggccg gcgcgcgcac gcgcaaggcg accgacgcgt acaacagcgg ggtgcgccgc
     1561 caccagtcgg gcgacctcgc gggcgccgtg gccgactaca cgcgggcgct agaggccgac
     1621 cccgacttcg ccgacgcgct cacgaaccgc gccgccgcgc gcctcacggt gggcgagacg
     1681 gcggcggcgc tcgaagacct cacgcgcagc atcgcgctcg acccgaacaa cgcagtggcc
     1741 tacatgaacc gcggcatcgc ccaccgcgcg ctcaagcggc ccgccgaggc cgtggccgac
     1801 cacacccggt cgctcgcgct caagccctcg gccgaggcct tctacaaccg ggcggtcgtc
     1861 cgccaggagt cgggcgagga agacctcgcg ctcgaagact actcgaaggc catcctctac
     1921 gacgcgaaga tggccgaagc ctacgtcaac cgcggcctga tactcctgcg ccgcgggcgc
     1981 gacgccgagg cccaggccga cttcgacgcg gccttccgcc tcaaccccgc gctgcgccct
     2041 cagtacgagc cccacatcaa aaacacgcgc ctcatacgcg agtcgcagaa gccctgacgc
     2101 gcccggcggc cacttccttg acaagccgtt tgggcggttc ctatgatgag ccgtccacgt
     2161 cgaagcgggc gcaaagctcc ccacgcgcgg tgagttgcgg cccgcgtcgc tttaacgcgc
     2221 gagaagagag gccacctaat ttgttcgggg cgagcatcgg gcgcggcgcg ggccgcatca
     2281 tcaacgcgat ggttcagggc ctcgcgctcc gtcatatcaa cccgaacctc ctgaccgtca
     2341 cgggcgtctc cattaacgtc ctctgcggcg ttatgttcgg cctcggccac ttcttctggg
     2401 ccggcataat cctaatcgtc gccaacctct tcgacatgct cgacggcgcc gtcgcgcgca
     2461 agacgggcca ggtcacgcgc ttcggcggct tcctcgactc caccttcgac cgcatatccg
     2521 acatggccgc cttcgtcggt ctgatggtct tctacgcgcg cgacacggag ttccactcta
     2581 cgctgaacgt cctgctcgcc ggcctcgcga tggtcggctc cgtgctcgtc tcctacgcga
     2641 gcgcgcgcgc ggagagtttg ataccgaagt gcgacgtggg gttcctgcgc cggcccgagc
     2701 gcgtggtgct gctcatcatc ggcgcgctct cgacgcaccc cggctccgac agcctcttcg
     2761 ccaaccgcat gcccgcggtg ctctgggtct tggccgtcgg ctcgttctgg actttcgcct
     2821 accgcatgta ccacacgtgg gtcgaggtga gccgcgccga cgccgcgccc gcccccgagg
     2881 ccgaagcgcc gcggcaaacc gtacccgaag cctcgcacgt caaagctgcc gcggagccag
     2941 gcgtcggcac cccggcgccg cgccgcggct agcggccgca cggccgcgcc tttcgattcg
     3001 aggtgagaac gaagttgact acctgcccat gctgcggagc gaggttcgac ggcgacctga
     3061 cggttagccc gtgcggctcg tgcggcgccc gcgccgtcgg cccgccgctc gcgcgccccg
     3121 agcgcgagct tccctcttac ggccacgcct ttgtgattac ggcggccggc gcgctgctcg
     3181 ccatcgcgtt cgcggcggcc gtggcgggcg cgctcctgcg gcgcgagaca ttctcgctcg
     3241 gctggcgggc gctagtctcc gcgggcgagg cggccgcgtg gggcatgaag tggactgcgc
     3301 tcccgctctc gctcgccgcg gcggccgtgt gcggccgtct ctaccgtcgc atgctgcgcg
     3361 accgcacgcg cttcgtcggc ttcggcgcgg cgcgcgcggg cctggccgcg actgccttga
     3421 cggcggcgct gctcgtgacg ctcataggcg tcagcgtccc cgagcgcctg cgcaggcgcg
     3481 agctggcgct gcgcgcggcc gagaacgcgc ggctctacgc gggcgacgcg gcgctgcgcc
     3541 gctaccgcca gcgcttcggc acctacccgg cgtcgctcgc agacctgcgg cggctcgacg
     3601 acccggactg ctcgctcgcc gaggccctgg ccgcggtggg ggcggccgag tacaggcccg
     3661 agacagatct ggcttcgctc tccgccggcc gcccgaagtc gcgcctccgg cgccgcgcgg
     3721 gcgaggcgcg cgtgcgcaac gcctccgcgc gggccgacgc ggacgacgtg ccgggcgcgg
     3781 ggctcgtgct cacgaactac cgcctgacgc tgcccggcag ggacggccgg ttggggacgg
     3841 ccgacgacct gctcatgcgc gacgggctga tagtcgccgc gccctgaaac tttgacatat
     3901 gggaatcctc gacatattcc ggcggaagaa gacagacgac gaggccgagc ggcgcacgac
     3961 gcttcttcgc gcgggccgca tcaccgaagg caccatcttc gacgtgataa cggacgaggc
     4021 cggcgccatc acgcaggtct tctacaacta cgagataaac ggcgtgcagt tcgagtcgtc
     4081 gcagctcctc gaccacgagc agcggcgccg ccccggcgac tacttccccg gcgcccgcgt
     4141 cacagtccgc ttcaacccgc ggcagcccgg caactcactg gtcgtttaaa tcgggcgccg
     4201 gtcgccgggg gtttcgagct acgaccggcg cgcggcgcct ttccttatgt tcaaaaagat
     4261 acttatagca aaccgcggcg agatagccgt gagggtgttg cgcgcgtgca gggagatggg
     4321 cgtctcgccc gtcgccgtct attccgaggc ggacgccgcg gcgctgcacg tccgcctcgc
     4381 ggacgaggct tacctgctcg gccccgcgcc ctctgtcgag agctacctgc gcattgaccg
     4441 cgtgattgac gccgcgctcc gcagcggcgc cgaggcgatt caccccggct acggcttcct
     4501 cgccgagaac gccgccttcg cgcgcgccgt gcgcggcgcc ggcctggtct tcataggccc
     4561 ctcgcccgag gcgatggagc tcatgggctc gaagacgagc gcgaggcgcg cggccataga
     4621 ggccggagcg cccgtcgtcc ccggcgccac cgagtcgctc tcctcgctcg acgacgcgcg
     4681 cgagacggcc gcgcgcgttg gctaccccgt catgctcaag gcggcggccg ggggcggcgg
     4741 caagggcatg cggctcgtcg cctcggaggc ggagatagct tccgccttcg agacggcgcg
     4801 ctccgaggcc gcgtccgcct tcggcgacga gtccgtctat atcgagaagg ccgtcgagcg
     4861 cccgcgccac atagagattc aggtctttgc cgactctcac ggcaactgcg tgcacctcgg
     4921 cgagcgcgag tgctccgtac agcgccgcca ccagaaggtc atagaggaat gcccctcgcc
     4981 tattgacgag ccgggcctga gggagaggat gggcgccgcc gcggtcggca tcgcgcgccg
     5041 ctgcgactac ttgggcgcgg gtaccgtcga gttcttggtc tccgacgtta cgcgcgagtt
     5101 ctacttcctg gagatgaaca cgcgcctaca ggtcgagcac cccgtcacgg agctggtcac
     5161 gggcttcgac ctcgtgcgcg agcagatacg cgtggccgcg ggcgagccgc tctccttctc
     5221 gcaaggcgac gtgcaatggc gaggccacgc aatcgagtgc cgcatctacg ccgaagaccc
     5281 ggagcagaac ttcctgccct cgcccggccg catcacgacg ctcgccgggc cgggcggccc
     5341 cggcgtgcgc tacgacggcg gcttctacgc gggcgcggaa gtccccatcc actacgaccc
     5401 gctcatcgcg aagctcgccg tctgggggcg cgaccgccgc gaggccatcg agcgcatgcg
     5461 ccgcgcgctc ggcgactacc gcatcggcgg cataaggacg accgtcggct tcttccgcga
     5521 ggttatgcgt gacgaggagt tcgtctctgg ccggctcgac acgggcttca tcccgcgctt
     5581 caacgagcgg cgcggccggg cgcgtgaaga gcagacgggc ggagccggcg acgagacggc
     5641 cgagcgcgac atcgccctaa tagctgccgc gctcgaatgg gaagagtccg ggcagcgcga
     5701 ctcccttcaa cagcaggcgg cccccgaggc ggcgccgagc cgctggaagg ccgcgggccg
     5761 cgccgccctg cacgagaggc tttaaagggc tactccgctt atgaaacttt tggcagagat
     5821 ggaaggcgag caggtcgcgc tcgaagtcag gcgcgagggc gggcgcgtcg tcgccgaggt
     5881 cggcgggcgc cgctacgagt tggaggcccg gagcctcggc ggcggcgagc acctgctcac
     5941 gcacgacggg cgcgtctatg actgtcgcgt agcaggggcg gctcgcgcgg gcgagttcga
     6001 ggtgagcttc agggagacgg cctaccgcgt cgcgctctca gacccgaagc ggctgcgcgg
     6061 cgcgcgcgcg gcggcgggcc acgacgccgg ccgctccgag gtgtcggcgc ccatgccggg
     6121 caaggtcgtg cgcgtgctcg tctccgaagg cgagcaggtc gaggccggcg ccggcctcgt
     6181 cgtcgtcgag gcgatgaaga tgcagaacga gttgaagtcg cccaagactg gcagggtcgt
     6241 gcgtatcgcc gcgcagcccg gcgccaccgt caacgcgggc gaagtcctcg tcacaatcga
     6301 atgacggccg tcggctcaac tcccatgccc gaccttcgcg tacttctgtg ggacattgac
     6361 gggactctgg ttcgcacgag gcggcagggc ctcttccagg actacacggc gccggtgctt
     6421 atgcgcgtgt tcggcacaga ggggcgcctg ggcgacctga gagtgtcggg gatgaccgac
     6481 atgcagattg ccttcgaggc gctgcgcgcc gaaggttaca cgcccgagca ggttctcgag
     6541 cgcgccgccg agatagcttc gctcttcacg gcggagcttg agcgcctggc ggccggcggc
     6601 gaagagattt actatgcgct gcccggcgtg cgagaagcgc tcgaagccgt ctcgcgcccg
     6661 ggccgatacc tttcggcgct gcttacgggg aacgtggagc cagcggcgcg gttgaagctc
     6721 aggctcgtcg ggctagatca cttcttccgg ctccccggcg ccttcggcga agactcgcac
     6781 gaccgccgcg acctgccccg cctcgcgcac gagcgcatca gccgccacac cgggctagac
     6841 cttcacccct cgcagttcat cgtcattggc gacaccccga acgacatagc gtgcgcacgc
     6901 cattacggag cgcgcgcggt cgccgtcgca accgggcgca gctacagcgc cgaagacctt
     6961 ctggcccact cgcccgacgc agtcctcccg gacctcacag acaccgggct gctgctcgac
     7021 actctcgaac gactttaacc gccgcctcag cttcccgccg cgcagagctg cgcgcgcccg
     7081 tccgcgagag agcggcgcga gcattcgagc accagcttcc agtcctgaat cgcagtcccc
     7141 tggacgttca ggtagtcggc gaaatacttg agccgccgcg tctcgcgcgt ctgcttctcg
     7201 gatagcccct tgtcgaggat tgagaagcgg tcgcggaggt agtagggcgg gagcgcctga
     7261 tacaagagcc gcgcctgcac ggaggcgggc tcgcccttga ggcccttgag aggcacgcga
     7321 tagacgacag tgttcgagcc ttccgaaccg gcgcgtgcgt ccctcgggat gtagcccggg
     7381 tcgcggcgcg cctcgccctt cgggtctgtg aactcggcgt aggggccttc gggcgaccag
     7441 ccacgcggca gcagccggtt gtccttcgcg tgctcgaaca gccgcacgaa gctgttggtc
     7501 agcagcccgt cgttatctct aacaagctcc tcgtaaatct gaacctggtc ggtgcgcgtt
     7561 atggggcgct c
//
LOCUS       DASPKR010000037         2585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1428260, whole genome shotgun sequence.
ACCESSION   DASPKR010000037 DASPKR010000000
VERSION     DASPKR010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2585)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2585
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1428260"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            310..942
                     /locus_tag="VD968_01115"
     CDS             310..942
                     /locus_tag="VD968_01115"
                     /inference="COORDINATES: protein motif:HMM:NF024248.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HYE13021.1"
                     /translation="MKTTKLDERFFDSTRGRIVRLLRGGSSTVNELASSLELTDNAVR
                     VHLLSLERDGLVRQTGVQRGPRKPHFAYELTAEAERLFPKAYDALLNQVIATLKGRLP
                     PDVLEDVLREVGRSLAAQHSSVKTPAELEGRLQNALEVLKAIGGSPSLDREGGRLVIR
                     SGGCPLSAAVVEHPEVCGLAESLVAEIVGLPVRERCVRGDSPKCCFEVGD"
     gene            complement(984..1301)
                     /locus_tag="VD968_01120"
     CDS             complement(984..1301)
                     /locus_tag="VD968_01120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13022.1"
                     /translation="MAQSLYSKATHALRWFLLRRLPACKEMVRVMSESMERPLTPRER
                     VMLKLHLWVCAWCVWYLEQLRLLRESLRARAARAEAEGPPGVSLSAEARERIKSALHR
                     PPH"
     gene            complement(1305..1925)
                     /locus_tag="VD968_01125"
     CDS             complement(1305..1925)
                     /locus_tag="VD968_01125"
                     /inference="COORDINATES: protein motif:HMM:TIGR02943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE13023.1"
                     /translation="MIREQLTVARLSPDPGAWVDEHGDYLFRYAMFRLRDPSAAEDAV
                     QETLLAALQAYHTYAGRGSERTWLTGILRHKLTDHFRRLGRETPLSQLEGEEFEHGEC
                     FRPPGDEWEGHWAVDGAPSEWRETPESLAEQSEFFRALDDCLSPLPPRVSGAFVLREV
                     DGLGTEEICRAFGVSTNNLWVMLHRARLHLRRCLELNWFKPGSVKH"
     gene            2080..2262
                     /locus_tag="VD968_01130"
     CDS             2080..2262
                     /locus_tag="VD968_01130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13024.1"
                     /translation="MKLKPCRDCGEMVPSDARGCPTCARNLEAERMLAKYFWGLLVPA
                     VALLAGAVIYLMYGRT"
BASE COUNT          433 a          808 c          872 g          472 t
ORIGIN      
        1 aggaggttaa aaaacttgtc gagcccggcc aggatggggg ccacggtgaa cccgaggtgc
       61 aggatttggt aggcttgata gccggggctc gcggcgcgcg ttcccgcgtc gggagagaga
      121 ttctgtgccg cgttgccctc aaaaatgtgt tccatcttct aagccctcct ttaggcttga
      181 aacctgatat ttttgccgcg agctctctct tttccttaaa atacaccgtt ttccaaataa
      241 gtcaatgact tttttgactt attgtgtttt tcacgttatc ggtgtatatt cgcggctgct
      301 tggggacgga tgaagacgac taaactagac gagcgatttt tcgacagcac gcgcgggcgc
      361 atcgtgagat tgctgcgcgg cgggtcgagc accgtcaacg agttggcgtc aagcctcgaa
      421 ttgacagaca acgccgtccg cgttcacctg ctgtcactcg agcgggacgg cctcgtccgg
      481 cagaccggcg tgcagcgtgg cccgcgcaag ccgcatttcg cctacgagct gacggcggaa
      541 gccgagcgcc tcttccccaa agcctacgac gccctgctca atcaggtaat cgccacgtta
      601 aagggccggc tgccgcccga cgtgctcgaa gacgtgctgc gcgaggtcgg caggtctctg
      661 gccgcgcaac attcttcagt taagacgccc gccgaactgg aggggcgatt gcagaacgcg
      721 ttggaggtgt taaaggccat cggcggctcg ccgagcctgg acagggaggg gggcaggctc
      781 gtcatacgca gcggcgggtg cccgctctca gcggcggtcg tcgagcaccc agaggtgtgc
      841 gggcttgcgg aatcgctcgt ggcggagatc gtgggcctgc ctgtccggga gcgttgcgtc
      901 agaggagact cccccaagtg ctgcttcgag gtcggggact agacttcggc cgccgggtgt
      961 tcgcgccgcg cgcggttgaa ggtctagtgg ggcgggcggt gtagggcgct cttgatgcgc
     1021 tcgcgggctt ccgccgagag cgagacgccg ggcgggcctt cggcctcggc cctggccgcg
     1081 cgcgcccgca gcgactcccg caggaggcgg agctgttcga gataccagac gcaccatgcg
     1141 cagacccaga ggtgaagctt gagcatcacg cgctcgcggg gcgtgagcgg gcgctccatg
     1201 gactcggaca tcaccctcac catctccttg caggcgggga gccgccggag caggaaccac
     1261 cggagcgcgt gcgtcgcctt gctgtaaaga ctctgtgcca tcacctagtg tttgaccgac
     1321 ccgggtttga accagttaag ttccaggcag cgccgcaggt gaaggcgcgc gcggtgcagc
     1381 atcacccaga ggttgttcgt cgagacgccg aaggcccggc aaatctcctc ggtgccgagg
     1441 ccgtccacct cgcggaggac gaaggcgccg ctgacgcgcg gcggcagggg cgagaggcag
     1501 tcgtcgaggg ctcggaaaaa ctcgctctgc tcggctaagg actcaggcgt ctcgcgccac
     1561 tccgaggggg cgccgtcaac cgcccagtgc ccttcccact cgtcgcccgg cgggcggaag
     1621 cactcgccgt gctcgaactc ttcgccttcg agctggctca agggggtctc gcgccccagc
     1681 cggcggaagt ggtctgtcag cttgtgcctg aggatgccag tgagccacgt tcgctcggag
     1741 ccgcggccgg cgtaggtgtg gtaagcctgt agcgcagcca ggagcgtctc ctggacggcg
     1801 tcctcggcgg ccgaaggatc gcgcaggcga aacatcgcat acctgaagag gtagtcgccg
     1861 tgctcgtcaa cccaagcgcc ggggtcgggg gagaggcgtg cgacggttag ctgctctcgg
     1921 atcattgaaa tcggcttcgg cgggctggcc tgttgcaggc gcagcggggg aagggcctcc
     1981 gatttgcgac ttcttcaatg ctgaaaaaga ttgacccccc gggctcgctg gtatattagc
     2041 acaggtgtct cagcagcctc ggaggattcg ggggaggcga tgaagctcaa gccctgccgc
     2101 gactgcggcg agatggtgcc gtccgacgcg cgcggctgcc ccacctgcgc gcgcaacctg
     2161 gaagccgaga ggatgctcgc aaagtacttc tggggcctgc tcgtccccgc cgtcgccctc
     2221 ctcgcgggcg cagtcatcta cctcatgtac gggagaacgt agtcccaact tcgccttcat
     2281 cagacgcgtg agcggcctgc gcgcccgccc ctatcatcct caaatcgccc tcctgctccg
     2341 tcccctgccc ttagccttcg gctgccgcct gtcttcctcc tacacagatt cgagagtgga
     2401 ataacgcgtc gcccccgagg gattcatgcg tcggagcgac cacgcatgtg gtggtggtcg
     2461 gcttctgaga gagcgcgtag gggcgcggca ttcgtgcgcg ccgtctctcg cgctaatgac
     2521 ggccgcctct cgcgcgcgcc gggggcccag cgtgcggcgc ggcgcacgaa cgaattttta
     2581 aggag
//
LOCUS       DASPKR010000038         2342 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1039733, whole genome shotgun sequence.
ACCESSION   DASPKR010000038 DASPKR010000000
VERSION     DASPKR010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2342)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1039733"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..247)
                     /locus_tag="VD968_01135"
     CDS             complement(<1..247)
                     /locus_tag="VD968_01135"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: protein motif:HMM:NF013398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I"
                     /protein_id="HYE13025.1"
                     /translation="MATRFSATEPDDNSVDDAASRSVDLEKIERGIRLVLEGVGEDPE
                     RPGLLKTPQRVAEMYAELTEGMREDPRAHVDALPGDKH"
     gene            complement(279..1460)
                     /gene="larC"
                     /locus_tag="VD968_01140"
     CDS             complement(279..1460)
                     /gene="larC"
                     /locus_tag="VD968_01140"
                     /EC_number="4.99.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF014072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarC"
                     /protein_id="HYE13026.1"
                     /translation="MRTLYFDCFAGISGDMTLGALVSAGVDERLLVERLRLLGVEGYE
                     ISFERVERSGLSATRAVVRARGEKHHRHLADIRDIIFNSRLGDGVKERAATIFGRLAE
                     AEARVHGVPVERVHFHEVGAVDAIVDVVGACIGFELLGVERFVSSPLNVGSGTVEMAH
                     GRFPVPPPAVAELLKGAPVYSSGVGGELVTPTGAAIVSAVCESFGPLPTMRLEAVGYG
                     AGSREHEGFPNALRVLVGEAGDTEGAGSTEELAVVETNVDDATPQVIGHVLEQALARG
                     ALDCFVTPVLMKKGRPGSLVSILCRPEDRDSMFELLFTETTTIGARSYRVERRALERE
                     VVTVETEFGPVSVKVARLRGRVVGGTPEYEDCRAAAERACVPLRAVEAAARVAFVKQS
                     G"
     gene            complement(1460..2206)
                     /locus_tag="VD968_01145"
     CDS             complement(1460..2206)
                     /locus_tag="VD968_01145"
                     /EC_number="2.3.1.286"
                     /inference="COORDINATES: protein motif:HMM:NF001753.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0017136 - NAD-dependent histone
                     deacetylase activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacylase"
                     /protein_id="HYE13027.1"
                     /translation="MAKTDETFTSDDLRGRLRAARSVFVLTGAGVSAESGVPTFRGGG
                     RSAVWKGMPFEVISSAGMVQRDLPAVWEWFDYRRRSLSHCEPNPAHRALALWQDRFEH
                     FTLATQNIDGLHAAAGSRDVLELHGSVWATRCTRCGARADLRSFAEDERPPACRECGD
                     FVRPDVVLFGEIVPHAVFARAAEAASACDLCFVVGTSAVVYPAAQLPLLAREAGAYVV
                     EVNPEPTPLSDVCDEVLQGSAGEILPLLEF"
BASE COUNT          386 a          835 c          768 g          353 t
ORIGIN      
        1 cgtgcttgtc gccgggcagc gcgtcaacgt gcgcgcgcgg gtcttcgcgc ataccctcgg
       61 tcagctcggc gtacatttcg gcgacgcgct gcggcgtctt cagaagcccc ggcctctccg
      121 ggtcttcgcc cacgccttcg agcactagcc ggatgccgcg ctcgatcttc tcaagatcaa
      181 ccgagcggct cgccgcatca tcgaccgagt tgtcgtccgg ctccgtggcc gagaatctcg
      241 tcgccataaa ggattagcca agcctggctg tcatcatcct aacccgactg cttcacgaaa
      301 gcgacgcgcg ccgccgcctc gactgcccgc agcgggacgc acgcgcgctc ggcagcggcc
      361 ctgcaatcct cgtactcggg cgttcctccc acgacgcgcc cgcgaaggcg cgctaccttc
      421 acgctaacgg ggccgaactc cgtctctacc gttaccactt ccctttcgag cgcgcgcctc
      481 tccacgcggt atgagcgcgc gccgatggtt gtcgtctccg tgaagagcag ctcgaacatc
      541 gagtcgcggt cttcgggccg gcagagaatc gagacgagcg agccgggccg gcccttcttc
      601 atcaggacgg gcgtgacgaa gcagtcgagc gcgccgcgag cgagcgcctg ttcaagcacg
      661 tggcctatta cctgcggcgt cgcgtcgtca acgttcgtct caacgaccgc aagctcctcg
      721 gtcgagccgg cgccttccgt atcccccgcc tcgcccacga gcacgcgcag ggcgttcggg
      781 aagccttcgt gctcgcgcga gccggcgccg tagcctactg cttccaaccg catggtgggc
      841 agaggcccga aggattcgca cacggcgctc acgatggccg cgcccgtcgg cgtcacaagc
      901 tcaccgccga cgcccgaaga gtaaacaggc gctcccttaa gcagttccgc gaccgcgggc
      961 ggagggacgg ggaaacgccc gtgcgccatc tcgacggtgc cgctgcccac gttcagcggc
     1021 gaagagacga agcgctcgac gccgagaagc tcgaagccga tgcaggcgcc gaccacgtca
     1081 acaatcgcgt caaccgcgcc gacctcgtgg aagtgcacgc gctcgacggg gacgccgtgc
     1141 acccgcgcct ccgcctccgc cagccgcccg aaaatcgtcg ccgcgcgctc cttcacgccg
     1201 tcgccgagcc gcgagttgaa gattatgtcg cgtatgtcgg cgaggtggcg gtggtgtttc
     1261 tccccgcgcg cgcgcacgac tgcgcgcgtg gcggaaaggc cggagcgctc gacgcgctcg
     1321 aagcttatct cgtagccttc gactccgagc agccttagac gctcgacgag aagtctctcg
     1381 tcaacgcccg ccgagacgag cgcgccgagc gtcatgtcgc cgctgatgcc cgcgaagcag
     1441 tcgaagtaga gcgtacgcat cagaattcca acagcgggag aatctcgccg gcgctgcctt
     1501 gcagaacctc gtcgcacacg tcggagagcg gcgtaggctc cgggttgacc tctacgacgt
     1561 aggcgcccgc ctcgcgcgcg agcagcggca actgcgccgc cggatagacg acggccgaag
     1621 tccctacgac gaagcacagg tcgcacgcag aggcggcctc ggccgcgcgc gcgaaaacgg
     1681 cgtgcggaac tatttcgccg aagagcacca cgtcgggccg aacgaagtcg ccgcactcgc
     1741 ggcaggcggg cggccgctca tcctcggcga agctccgcag gtctgcgcga gcgccgcagc
     1801 gcgtgcagcg agtcgcccag acgctaccgt ggagttcgag cacgtcgcgc gagcccgcgg
     1861 ccgcgtgcag cccgtcaatg ttctgcgtgg cgagcgtgaa atgctcgaac ctgtcctgcc
     1921 agagcgcgag cgcgcggtgc gcggggttcg gctcgcagtg cgagagcgag cgccgccggt
     1981 agtcgaacca ctcccacacg gccggcaaat cgcgctgaac catgccggcc gaggagatga
     2041 cctcgaaggg catccccttc cagaccgccg agcggccgcc gccgcggaag gtcgggacgc
     2101 cgctctcggc cgagacgccc gcgcccgtca gcacgaagac gctgcgggcc gcgcgcaggc
     2161 ggccgcgcaa atcgtcggat gtgaatgtct cgtcagtttt cgccacgaat cgcagggatg
     2221 gtagcagagc gcggctggcg agtgtcaagc agggcggccg ggcgggctcg gttggcgcga
     2281 ctccgtttcg ctgcgctata ctttcgggcc ttcgggccgc cgcgttttcg gtattctttc
     2341 gt
//
LOCUS       DASPKR010000039         5780 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1169565, whole genome shotgun sequence.
ACCESSION   DASPKR010000039 DASPKR010000000
VERSION     DASPKR010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5780)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5780
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1169565"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1681
                     /gene="bshC"
                     /locus_tag="VD968_01150"
     CDS             <1..1681
                     /gene="bshC"
                     /locus_tag="VD968_01150"
                     /inference="COORDINATES: protein motif:HMM:NF021586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0071793 - bacillithiol biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bacillithiol biosynthesis cysteine-adding enzyme
                     BshC"
                     /protein_id="HYE13028.1"
                     /translation="STTESACFSTPEGAGLRVERLPFERVPGQSRLFLDYLKDPLALR
                     RFYPEAVRFHHELAARAPRVLAEHKTDRGALCDALEALNSSWGAPDEVLASVRRLRSP
                     GSVAVVTGQQAGLFTGPLYTIYKALSAVKLAACLTSRGTEAVPVFWIATEDHDWEEVQ
                     TAEVMACDGRLAGAGLPSELHAEGRPVGGVVLDESAGEATKRLFELLPSSEFVPELEA
                     LVGDAYRPGRTFGEAFARMLTAFTGRYGLVLLDPSDARLKRLAAPLYAEAARRAEEIA
                     AAAVERSRELERDGYHAQVHTSPDSFPLFISEGGARRALTRGGDGRYHAKGSERSWEA
                     GELASMAEAEPELFSPNVTLRAVVQDFLLPTVAYFGGAAEIAYFAQTAESYRALGRPV
                     TPILHRASLTIVERRTGRTLERYGLRLEDFFGGLDSVIARVVEEHLGADVARRMDETE
                     RAVGGALDRLQEELRGFDPTLADALASGRRKIEHQLTGLRARFHRARMSRDRAVLRQL
                     ERASASLYPEKSLQERHLNITSLVARHGPYFVQWAHDAIDLGAVEHQVVYL"
     gene            1711..3678
                     /gene="mutL"
                     /locus_tag="VD968_01155"
     CDS             1711..3678
                     /gene="mutL"
                     /locus_tag="VD968_01155"
                     /inference="COORDINATES: protein motif:HMM:TIGR00585.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HYE13029.1"
                     /translation="MPQIRVLSDHVANQIAAGEVVERPASVAKELVENSIDAGARRVE
                     VDVEAGGRRLLRVADDGCGMSRDDAVLAFERHATSKISSAEDLERVSTLGFRGEALPS
                     IASVARVELLTQPEGDSEGTRVLIEGGRMRDVAPAARPRGTTVAVRDLFFNVPARRKF
                     LRSEATESFHLANLVTHYALAHPEISFALTNNGREVLRASPAESLRERAYQIFGEEFL
                     ENLLEVEGGHAAVARVRGYVSAPRERRSTRDAQYLFVNGRFVRDRLVARALSEGYRSV
                     LPQGTYPAALLFLEVPPEEVDVNVHPAKTEVRFRRSAAVSDAVREAVRAALSSAGHVR
                     QEETFAGLEAEPPRAPGPYAPPAVSPSSTAVGGAARQEAIDFGRDATPAPEPLWLDVA
                     ERETASPSSPALGAVARNALATTAAAPDDRQPPPEVDESAAAGSEPAVAAAALPPLES
                     AAALARETAVESLSPGITPLGQMGESFIVATDSEGLLLIDQHVAHERILFDKYRALEQ
                     ERAAESQQLLVPETFDLTPAQAAAFGEVAAELERQGFGLMRLSGRTVAVRAVPADLPA
                     GDARNLLAEILDAVEAERRGRAGATLCDLVAARLACRAAVKSGTPLTHEKMRWLIERL
                     IATSSPATCPHGRPVILRIARRDIERGFRRP"
     gene            3814..>5780
                     /locus_tag="VD968_01160"
     CDS             3814..>5780
                     /locus_tag="VD968_01160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13030.1"
                     /translation="MTHATTLRLRVLLAFSLFGLATCLLGAPRSGAETPPQTSQPCAA
                     LPLPSAVGVPEYERRLIAFLKARCYQKWTADREVRDTGPFIHNTYYGTHPAVRVFYSP
                     EAWDWVKRRGRRGDPADGATIIKEQFAPPAEAGAPLNGWSIMVRDEKGAWDGWYWSGH
                     AVEAKYDSQMERFDPSKIDNKGQGFGTYCIRCHASAVAQTQTFSTARNVEEDPISYLV
                     QLPTFLPPARNTQLAQSNAPPPGAVTPRSPHDDQHLTAAPAHTPPAGASPPAPFPNEN
                     FDHVFSGQKGPPQFITSDQCMGCHSANDVNMSAAFLSPAVNLLPYTEWRSSMMGLAGR
                     DPVFHSQLESERAQFANSPAGNLDGFLDTKCFHCHGVMGQRQQVINSGGQHSVVSQQT
                     PSFNHEWVYALPSPPRYEYEGAALYGALARDGVSCAVCHQMADANPKLGTEASFTGDF
                     NLDKPGTVNGPYRDVLPLPMKHALGITPRYAPQITSSALCGSCHVVITPTLDAQGRQL
                     KGPDGKPLVFHEQTTYMEWLNSDYQNEPELSKRPVRVGGVQTCQDCHMPKTYKGLRVK
                     TRIANIEDNTYPFVDFRLPDKDLTLKVRDDYSRHTLVALNVFVNQMFQQFADVLGVST
                     GDYMYPRAADGTTPVAGLVTTENSMLELAQET"
BASE COUNT          884 a         2217 c         1867 g          812 t
ORIGIN      
        1 cagcacgacc gagtcagcct gtttcagcac gcccgagggc gcggggcttc gcgtcgagcg
       61 cctgcccttc gagcgcgtcc ccggccagtc gcgcctcttc ctcgactacc tcaaagaccc
      121 cctggcgcta cgccgcttct accccgaggc cgtgcgattt caccacgagc ttgcggcgcg
      181 cgcgccgcgc gtgctcgccg agcacaagac cgaccgcggc gcgctctgcg acgcgctcga
      241 agcgctcaac tcatcttggg gcgcgcccga cgaggtgctc gccagcgtgc ggcgcctgcg
      301 ctcgcccggc tcggtcgccg tcgtcacggg gcagcaggcc ggcctcttca cggggccgct
      361 ctacacgatc tacaaggcgc tctcggccgt gaagctcgcc gcctgcctca cctcgcgcgg
      421 caccgaggcc gtccccgtct tctggatagc gaccgaggat cacgactggg aggaggttca
      481 gaccgccgag gtcatggcct gcgacggccg gctcgcgggc gcggggctcc cctcggagct
      541 tcacgccgaa gggcggcccg tcggcggggt cgtgcttgac gagagcgccg gggaggcgac
      601 caagcgtctc ttcgagctgc tgccttcgag cgagttcgtc cccgagctgg aagcgctcgt
      661 cggcgacgcc taccggccgg ggcgcacgtt cggcgaggcg ttcgcgcgca tgctcacggc
      721 cttcacaggc cgctacggcc tcgtgctcct ggacccttcg gacgcgcgac tcaagcggct
      781 ggccgcgccg ctctacgctg aggccgcgcg ccgcgccgag gagatcgcgg ccgcggccgt
      841 cgagcgctcc cgagagctcg agcgcgacgg ctaccacgcg caggttcaca cctcgcccga
      901 ctcgttcccc ctgttcatct ccgaaggggg cgcgcggcgc gcgctcactc ggggcgggga
      961 cggccgctac cacgcgaagg gatcagagcg atcctgggag gcgggcgagc tggcctcgat
     1021 ggcggaagcg gagcccgagc tatttagccc gaacgtcacg ctgcgcgccg tcgtgcagga
     1081 cttcctgctc cccacggtcg cctacttcgg cggcgcggcc gagatcgcct acttcgcgca
     1141 gacggccgag agctaccgcg cgctgggccg tcccgtcacc cccatactcc accgcgcgag
     1201 cctgaccatt gtcgagcgcc gaactggccg cacgctcgaa cgctacggcc tgcgcctcga
     1261 agacttcttc ggcggcttag actcggtcat cgcccgcgtg gtcgaggagc atctaggcgc
     1321 agacgttgcg cgccgcatgg acgagaccga gcgggccgtg ggcggcgcgc tcgaccgctt
     1381 acaggaagag cttcgcggct tcgacccgac gctcgcggac gcgctcgcgt cgggccgccg
     1441 caagatagag caccagctca cgggccttcg cgcgcgcttc caccgagccc gcatgtcgcg
     1501 cgaccgggcg gtgctccgtc agctagagcg cgcctcggcc tcgctctacc ccgagaagag
     1561 cttgcaggag cgccacctga acatcacttc cctcgtcgct cgccacggcc cctatttcgt
     1621 ccagtgggcg cacgacgcga tagacctcgg cgccgtcgag caccaggtgg tttacctcta
     1681 gcgcccggcc gccgccggag tcaccgcgcc atgcctcaaa tcagagtcct ctccgaccac
     1741 gtcgcaaacc agatcgccgc gggcgaggtg gtcgagcgcc cggcctcggt ggcgaaggag
     1801 ctggtcgaga actcgattga cgcgggcgcc cgccgcgtcg aggtggacgt ggaggcgggc
     1861 gggcggagac ttctgcgcgt ggcggacgac ggttgcggga tgtcgcgcga cgacgccgtg
     1921 ctcgccttcg agcgccacgc cacgtccaag ataagctcgg ccgaagacct cgagcgcgtc
     1981 tcgacgctcg gcttccgcgg cgaggcgctg ccgtcaatcg cgtcggtcgc gcgcgtcgag
     2041 ctactcactc agcccgaggg agattcggaa ggcacgcgcg tcctcatcga gggcgggcgc
     2101 atgcgcgacg tggcgccggc cgcgcggccc cgcggcacga ccgtcgccgt gcgcgacctc
     2161 ttcttcaacg tcccggcccg caggaagttc ctgcgctcgg aggcgaccga gagcttccac
     2221 ctcgccaacc tcgtcacgca ctacgcgctc gcgcaccccg agataagctt cgccctcacg
     2281 aacaacggcc gcgaggtgct gcgcgcttcg ccggccgaga gcctccgaga gcgcgcctac
     2341 cagattttcg gcgaggagtt tctcgaaaac ctgctcgaag tcgagggcgg ccacgctgcg
     2401 gtcgcgcgcg tgcggggcta cgtctcggcc ccgcgcgagc ggcgctccac gcgcgacgcg
     2461 caatacctct tcgtcaacgg gcgcttcgtg cgcgaccgac tcgtggcacg cgcgctctcg
     2521 gaaggctacc gctctgtact gcctcagggg acttacccgg cggcgctcct cttcctcgaa
     2581 gtcccgcccg aagaggttga cgtgaacgtc cacccggcga agacggaggt gcgcttccgc
     2641 cgctccgcgg ccgtctccga cgccgtgcgc gaggccgtcc gcgccgcgct ctcctcggcc
     2701 ggccacgtca ggcaggaaga gactttcgcc ggcctcgaag ccgagccgcc gcgcgccccg
     2761 ggcccttacg cccccccggc ggtgtcaccc tcttcaacgg ccgtcggcgg ggccgcgcgg
     2821 caggaggcga ttgacttcgg ccgcgatgct acgcccgcgc ccgaaccgct ctggctcgac
     2881 gtggcggagc gggagacggc gagcccctca agccccgcgc tcggcgcggt ggcgcgtaac
     2941 gcgcttgcca ctacggccgc cgcgcccgac gaccgccagc cgccgcccga agttgatgag
     3001 agcgccgccg ccggaagcga gccggccgtc gccgcggcgg cgctcccgcc gctcgaatcc
     3061 gccgcggcgc tcgcgcgcga gacggcggtc gagtcgctct cgcccggcat aacacccctg
     3121 ggccagatgg gcgagagctt catcgtcgcc accgactcgg agggcctgct cctcatagac
     3181 cagcacgtcg cgcacgagcg catactcttc gacaagtacc gcgcgctcga acaggagcgc
     3241 gccgccgagt cgcagcagct actcgtcccc gagaccttcg accttacgcc cgcgcaggcc
     3301 gcggccttcg gcgaggtcgc cgcggagctg gagcgccagg gcttcggcct catgcgcctc
     3361 tccggccgca ccgtggccgt gcgcgcagtc ccggccgacc tgccggcggg cgacgcccgg
     3421 aacctgctcg ctgagatact ggacgcggtc gaggccgagc gccgggggag ggccggcgcg
     3481 acgctctgcg acctagtcgc cgcgcgcctc gcgtgccgcg ccgccgtgaa gtccggcacg
     3541 ccgctcacgc acgagaagat gcgctggctc atcgagcgac tgatcgcgac ctcctcgccc
     3601 gccacctgcc cgcacgggcg cccggtcatc ctccgcatcg cccgccgcga catcgagcgc
     3661 ggcttccgcc gcccctaaaa ttctgttgac acgcccggcg gcgaggcata cgcttgcggt
     3721 cacctcgccg gctcacggtt tcttctcttc cgaacaagct tcacaagtct tccggcccga
     3781 gacggccgcg ccgcgctgcc aaaggagaac gcgatgactc acgcgacgac gctacgcctc
     3841 cgagtgttgt tggccttctc gctcttcggc ctagcaacct gcctgctcgg cgcaccccgc
     3901 tccggcgccg agacgccccc gcaaacgtcg cagccctgcg ccgcgctgcc cctgcccagc
     3961 gcagtcggcg tccccgagta cgagcgcagg ctcatcgcct tcctcaaggc ccgctgctac
     4021 cagaagtgga cggccgaccg cgaggtcagg gacaccggcc ccttcatcca caacacctac
     4081 tacggcacgc acccggccgt gcgcgtcttc tactcgcccg aggcttggga ctgggtgaag
     4141 cgccgcggcc ggaggggcga ccccgccgac ggcgccacca tcatcaagga gcagttcgcg
     4201 ccgccggccg aggcgggcgc gcctctgaac ggctggtcca tcatggtgcg cgacgagaag
     4261 ggggcctggg acggctggta ctggtcgggc cacgccgtcg aggcgaagta cgactcgcag
     4321 atggagcgct tcgacccctc gaagattgac aacaaggggc agggcttcgg cacctactgc
     4381 atacgctgcc acgcctcggc cgtggcgcag acgcagacct tctcgaccgc gcgcaacgtc
     4441 gaggaagacc ccatctcata cctcgtgcag ttgcccacgt tcctcccgcc cgcgcgcaac
     4501 acgcagctcg cgcagtcgaa cgcgccgccg cccggcgccg tgacgccccg ctctccccac
     4561 gacgaccagc acctaacggc cgcccctgcg cacacgccac ccgcgggcgc cagccctcct
     4621 gcccccttcc ccaacgagaa cttcgaccac gtcttctccg gccagaaggg gccgccgcag
     4681 ttcattactt cggatcagtg catggggtgc cactctgcga acgacgtgaa catgagcgcc
     4741 gctttcctga gcccggccgt caacctcttg ccctacaccg agtggcgctc ctcgatgatg
     4801 ggccttgcgg gccgagaccc cgtcttccac tcgcagctcg agtcggagcg cgctcagttc
     4861 gccaactccc cggcgggcaa cctcgacggc ttcctcgaca ccaagtgctt ccactgccac
     4921 ggcgtcatgg gccagcgcca gcaggtcata aactccggcg gccagcacag cgtcgtcagc
     4981 cagcagaccc cgagcttcaa ccacgagtgg gtctatgcgc tgccctcgcc gccccgctac
     5041 gagtacgagg gcgccgcgct ctacggggcg ctcgcgagag acggcgtatc ctgcgcggtc
     5101 tgccaccaga tggcggacgc caacccgaag ctcggcacgg aggcgagctt caccggcgac
     5161 ttcaacctcg acaagcccgg caccgtcaac ggcccgtaca gggacgtgct gccgctgccg
     5221 atgaagcacg cgctcggcat cacgccccgg tacgccccgc agataacgtc gtcggcgctg
     5281 tgcgggagct gccacgtcgt cataacgccc acgctcgacg cgcagggccg ccagctaaaa
     5341 ggcccggacg gcaagcccct cgtcttccac gagcagacga cctacatgga gtggctcaac
     5401 agcgactacc agaacgagcc ggagctctct aagcgcccgg tccgagtcgg cggcgtgcag
     5461 acctgccagg actgccacat gccgaagacc tacaagggcc tgcgcgtcaa aacccgcatc
     5521 gccaacatag aggacaacac ctacccgttc gttgacttcc gcctgcccga caaggacctg
     5581 acgctcaagg tgcgcgacga ctactcgcgc cacacgctcg tggcgctgaa cgtcttcgtt
     5641 aaccagatgt tccagcagtt cgcggacgtg ctcggcgtct cgaccggcga ctacatgtac
     5701 ccgcgcgcgg cggacggcac cacgcccgtc gcggggctcg tgacgacaga gaactcaatg
     5761 ctggagctcg cgcaagagac
//
LOCUS       DASPKR010000040         3488 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_134812, whole genome shotgun sequence.
ACCESSION   DASPKR010000040 DASPKR010000000
VERSION     DASPKR010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3488)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3488
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134812"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1422)
                     /locus_tag="VD968_01165"
     CDS             complement(<1..1422)
                     /locus_tag="VD968_01165"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HYE13031.1"
                     /translation="MGSTRPALSAILALALLLLTSAPLAAAAPPARTPRRAAQEKKDE
                     KKKDDKKDAKDDKPKLSKVERKYQEIKKFSLDLYNKDADFRDEVQGAYRQKQREHSEY
                     AYFINTRNRQDSQVTRDGDKLKVDDTLYDNPLAQDYVNRVGQSLVPAGTTHLYAFKIT
                     LNPIPEARSLSTGTIYVSSGLLAQIDNEAQLAYVLSHEIAHVERDHWLEDVLVERGME
                     EYNEKQATKRRRIGMLASLATAAVASAGNAQATNVAFFSEAFIMPNILKLAVQDAVVA
                     WDTIQEDEADQLGLQYMLRRNYDAREVPKFFAGLQRTSRRDRRVGLGFMGNLERVVER
                     AQTVNALIGGLGGTLTDKLLIGTANIAALRANALPVQAPRPTGPDTGKSLDPSRDAAT
                     RAAAADRALGSGQMSAELKAKLDAGELIGSTAEFEAVMAELKRDNGVRALYYDMFQMA
                     RDNLEESLLIRSNDPYTHFYYGKV"
     gene            1705..2826
                     /gene="gcvT"
                     /locus_tag="VD968_01170"
     CDS             1705..2826
                     /gene="gcvT"
                     /locus_tag="VD968_01170"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: protein motif:HMM:NF001567.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HYE13032.1"
                     /translation="MSAPTLKQTPLNAAHRRLGGRMVDFGGWDMPVQYPSGTVEEHLR
                     TRTRSGLFDVSHMGEFEVRGPGAIALVNRLCSNDASKLVDGQAQYSALTTPEGTVVDD
                     LLVYRFGPEHLLLVVNASTTDKDWAWIESHRGDEEVRLTNRSSDFCQLALQGPDAARI
                     LQALTETPLEEIKYYHFREGGVAGVPSIISRTGYTGEDGFEVYAASEEAERLWDRLLD
                     AGNYGQQGGTLPCGLAARNTLRLEAGMALYGHEITEETTLLEANLGWITKLSKGDFIG
                     REALARQKEEGVRRRLVGFEVTERGIARDGQDVYVGGEKVGYVTSGSPAPYLKKNIGM
                     AYVPAEHAAAGTAIQIDVRGRMVGARIVPVPFYKREKKG"
     gene            2966..3361
                     /gene="gcvH"
                     /locus_tag="VD968_01175"
     CDS             2966..3361
                     /gene="gcvH"
                     /locus_tag="VD968_01175"
                     /inference="COORDINATES: protein motif:HMM:NF002270.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HYE13033.1"
                     /translation="MSNVPEGLYYSKDHEWLRVEGDTGTVGITDHAQSSLGDVVYVEL
                     PKVGETFSAHDSFGSVESVKAVSELFIPVAGEIVEVNSSLQDEPEKVNNDPYGDAWMV
                     RIRLSNKGEVDGLLTAAEYEDYLKSETEQ"
BASE COUNT          554 a         1089 c         1213 g          632 t
ORIGIN      
        1 gaccttgccg tagtagaagt gggtgtacgg gtcgttcgag cgtatcagta gcgactcctc
       61 caagttgtcg cgcgccatct ggaacatgtc gtagtagagg gcgcgcacgc cgttgtcgcg
      121 cttgagctcc gccatgacgg cctcgaactc ggccgtgctg ccgatgagct cgcccgcgtc
      181 gagcttggcc ttaagttccg ccgacatctg cccggagccg agcgcgcggt cggcggccgc
      241 ggcgcgcgtg gccgcgtcgc gcgaggggtc gagcgacttg cccgtgtcgg ggcctgtcgg
      301 tcgcggcgcc tgcacgggca gggcgttcgc gcgcagcgcc gctatgttgg ccgtgccgat
      361 aaggagcttg tcggtgagcg tgccgcctaa gccgccgatg agggcgttga cggtctgggc
      421 gcgctcgacg acgcgctcga ggttgcccat gaacccgagg ccgacgcggc ggtcgcgtcg
      481 cgacgtccgc tggaggcccg cgaagaactt cggcacctcg cgcgcgtcgt agttgcgccg
      541 cagcatgtac tgaaggccca actggtcggc ctcgtcctcc tggatggtgt cccaggcgac
      601 aacggcgtcc tggacggcga gcttcagtat gttgggcatg atgaaggctt cggagaagaa
      661 ggcgacgttg gtggcctgcg cgttgcccgc ggaggcgacg gccgctgtgg ctaggctcgc
      721 gagcatccct atccgcctgc gcttcgtggc ctgcttctcg ttgtactcct ccatgccgcg
      781 ctcgacgagc acgtcctcga gccagtggtc gcgctcgacg tgcgctatct cgtggctgag
      841 gacgtaggcg agctgcgcct cgttgtctat ctgcgccaga aggcccgaag agacgtaaat
      901 cgtccccgtc gagagcgagc gcgcctcggg gatggggttc agcgttatct tgaaggcgta
      961 gaggtgggta gtccccgcgg ggacgagcga ctggccgacg cggttgacgt agtcctgcgc
     1021 gagcgggttg tcgtatagcg tgtcgtcaac cttgagtttg tcgccgtcgc gcgtcacctg
     1081 cgagtcctgc cggttgcgcg tgttgatgaa gtaggcgtac tcgctgtgct cgcgctgctt
     1141 ctgccggtag gcgccctgga cctcgtcgcg gaagtcagcg tccttgttgt agaggtcgag
     1201 gctgaacttc ttaatctcct ggtacttccg ctccaccttc gacagcttcg gcttgtcgtc
     1261 cttagcgtcc ttcttgtcgt ccttcttctt ctcgtccttc ttctcctggg cggcgcgccg
     1321 gggcgtgcgc gcgggcggcg cggcggccgc gagcggcgcc gacgtaagaa gcaggagcgc
     1381 gagggcaagg atcgcggaca gggcggggcg ggtgcttccc atgttcatgt tgtcctccta
     1441 agagtgtcgg aatgtgacgg ccgcgcgcgg gggcgggcgc acgcgagttc ggcgaggctg
     1501 cctgcggcct tcaggcgcag ctcgggccct gattttagcg ggcgcaagct atcacaactg
     1561 ccgcggcgca gcaacacttt tgccgcgcaa gcgggcgcgc cggagcctcg cttgacctcg
     1621 tctcgcgcgg cgtgttaggt ttcgtgccta cgcactatca atactttttg cggcgggaat
     1681 ctccggctgg attgtgagac tggtgtgagc gcgcccacgc ttaagcagac gcccctgaac
     1741 gcggcgcaca ggcgtctggg cggccgcatg gtggatttcg gcggctggga catgcccgtg
     1801 cagtaccctt cggggacggt cgaggagcac ctgcgcacgc gaacgcgctc cggcctcttc
     1861 gacgtgtcac acatgggcga gttcgaggtt cgcggccccg gcgccatagc cctcgtcaac
     1921 cgcctctgct cgaacgacgc ctcgaagctc gttgacggcc aggcgcaata ctccgcgctc
     1981 accacgcccg aaggcacggt ggttgacgac ctgctcgtct atcgcttcgg cccggagcac
     2041 ctcctgctcg tcgtcaacgc ctcgacgacc gacaaggact gggcgtggat cgagtcgcac
     2101 cgcggcgacg aagaagtacg gctcacgaac cgcagctcgg acttctgcca gctcgccctt
     2161 caaggccccg acgccgcgcg catacttcag gcgctcaccg aaacgccgct cgaagagatt
     2221 aagtattacc acttccgcga ggggggcgtc gcgggcgtgc cttccatcat ctcgcgcacg
     2281 ggctacacgg gcgaggacgg cttcgaggtc tatgccgcct cggaggaggc cgagcgcctc
     2341 tgggacaggc tgctcgacgc cggcaactac gggcagcagg gcggcacgct gccctgcggg
     2401 ctcgccgcgc gcaacaccct ccggctcgaa gcgggcatgg cgctctacgg ccacgagata
     2461 acggaagaga cgacgcttct ggaagccaac ctcgggtgga taaccaagct gtcgaagggc
     2521 gacttcatcg ggcgcgaggc tctggcgcgg cagaaggagg agggcgtccg ccgcaggctc
     2581 gtcggcttcg aggtcacaga gcgcggcatc gcgcgcgacg ggcaggacgt ttacgtgggc
     2641 ggcgagaagg tagggtatgt cacgtcgggc agccccgcgc cgtacctgaa gaagaacatc
     2701 ggcatggcct acgtgccggc cgagcacgcc gccgcaggca ccgcgattca gatagacgtg
     2761 cgcgggcgca tggtaggcgc acggatcgtc cccgtgccgt tctacaagag ggagaagaag
     2821 gggtgagaag ctgtcagcgg tcggctttcg gccgtcagcc ttattcgata tttggtcggg
     2881 cggcccgtca gggcgcgaag tttttttgat aggcgcaaaa gctgaaagct gaccgcttac
     2941 tgccgacagc tttctcggag ggatcatgtc taacgttcct gaaggcttgt actacagcaa
     3001 ggatcacgag tggctgaggg tggagggcga cacgggcacg gtcggcatca cggatcacgc
     3061 gcagtcttcg ctgggcgacg tggtctatgt cgagttgccg aaggtcggtg agaccttctc
     3121 ggcgcacgac tcgttcgggt cggtcgagag cgtgaaggcc gtctcggagc ttttcatccc
     3181 cgtcgcgggc gagatcgtcg aggtcaactc gtcgctccag gacgagcccg agaaggtcaa
     3241 caacgacccc tacggcgatg cgtggatggt gcgcatacgc ctctcgaaca agggcgaggt
     3301 tgacgggctg ctcacggccg ccgagtacga ggactacctc aagtcggaaa cggagcagta
     3361 ggaacaaagt gcgctacatc ccgaactcgc cggaagagcg gcaggagatg cttggcggcc
     3421 tcgggctcgg ctcggccgaa gagctcttcg actccatccc ctccgacgtc ctcctgcgcg
     3481 ggccgctc
//
LOCUS       DASPKR010000041        14050 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1170065, whole genome shotgun sequence.
ACCESSION   DASPKR010000041 DASPKR010000000
VERSION     DASPKR010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 14050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14050)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14050
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1170065"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..824)
                     /locus_tag="VD968_01180"
     CDS             complement(<1..824)
                     /locus_tag="VD968_01180"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE13034.1"
                     /translation="MKLYCARWVLPVSSETIEHGAVAVEGTRVAGVGRREELSARFGG
                     AAVEDFGEAVITAGFVNCHTHLELTVMRGFLEREEADFSAWLKKLTVARMFRMTPEDL
                     YVSAAWGAVEAARAGVTCVGDACSEGANAMRALRDAGLRGVVYQEAFGPDASLAGGQF
                     DKARHAIDSLRAGETGLVRLGLSPHAPYTVSPPLLTMLARYAIAEGLPVMTHAAESRA
                     EEMLMLQGRGPFAEGYASRGFEFASPGVSTIRHLAATGLLDARPLLAHCVRVSEEE"
     gene            complement(821..2131)
                     /locus_tag="VD968_01185"
     CDS             complement(821..2131)
                     /locus_tag="VD968_01185"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE13035.1"
                     /translation="MTYRELLSSNPNFRRLWLGQVVSEIGDWLNNIAVLALAIELARG
                     RSVGLAIAVYAIARHLPLFIFGPVAGVVVDRVSRRRVMIAADIARAVLALGFLFAGRL
                     SSLAVIYVVGASLFSVSAFFNAAKRATIPNLVGGTEELLAANSLSASTTAATIAVGSA
                     LGGVAATALGRDAVFVINAVTFLASAEMIRRVRAGRRARAEAEERPARRASPAAFFSE
                     FREGLRYVGRDRVLAAVFVVAAGWGLGNGAARALYSIFGARLGEEAVASWGAAWRAAV
                     ERPTDFGISVLFVAMGLGGVLGAPLARRFNSAAGEGLGARMGRSLVLDGCGLAVFSLM
                     PNLLGAAAVLVAREMNFAIWWTAQQTIIMRRTNDAFAGRVFASYETLTTLMMVGSMLA
                     SGAAADAVGIRPVAACAGSVVMLSGAAWFVLRRRGAGREGRGRR"
     gene            complement(2128..2703)
                     /locus_tag="VD968_01190"
     CDS             complement(2128..2703)
                     /locus_tag="VD968_01190"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HYE13036.1"
                     /translation="MRRFLVAALILLALTAAGLYYFNRYWVHRYDALIARQAAVYRLD
                     PDLVWSIIHEETYFSPWKKGEAGEVGLMQVTPTVGREWAAETGMRELAGRMRSDPEGA
                     LLDPERNIQVGCWYLEKIAKAYRDTPGAEARVVAAYNAGPSRAAEWDRVAPGEPKLTA
                     EQFIERIDIPSTRAYVSNILRRYREKKAGGR"
     gene            complement(2826..3623)
                     /locus_tag="VD968_01195"
     CDS             complement(2826..3623)
                     /locus_tag="VD968_01195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13037.1"
                     /translation="MEETFEAIGLDVPSEKDFNHLAERAGDQGEPTQLSRRGVVLHGR
                     CWKLGEGLEVWTVLYESGTGEIFYADCRPGFRARYAQRISPWALTEYDEDGEAIVHGY
                     CDGSETEVLFELQNLTEVGPEGFRAQELHVGLCGLAYRARVHAPGRGEQRARWQPLEE
                     AAPSRAAHENDWCLAGRVVSFKTLRNPLSGSELYWAYLDLERLRLEVLVNSRALRGGP
                     LSVGATLSADVWLQGHVLDRRALLSRYEGRDMGVPKSALWSHLKRGN"
     gene            complement(3643..3867)
                     /locus_tag="VD968_01200"
     CDS             complement(3643..3867)
                     /locus_tag="VD968_01200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13038.1"
                     /translation="MYRKPRFLEELHSIREEMSREADYDVELFAEMVRSGARPRHGPA
                     RNIRGFRTRAPRAGQEEAAPKPAQRKRATG"
     gene            complement(3981..4454)
                     /locus_tag="VD968_01205"
     CDS             complement(3981..4454)
                     /locus_tag="VD968_01205"
                     /inference="COORDINATES: protein motif:HMM:NF013970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HYE13039.1"
                     /translation="MKQSIYLETSVVGAYLDNGEPFRRDLTMRWWEREMSEYNAVISP
                     LVVRELERVPEPHRTAYLKLVEPLERVELSEEAAILAEGYISRGIFHRKYIGDAVHVA
                     LASFHKIDYLVTWNFGHLANVRRQARIRLFNTAAGFFVPQIVTPEFLVSETTEKQ"
     gene            complement(4451..6031)
                     /locus_tag="VD968_01210"
     CDS             complement(4451..6031)
                     /locus_tag="VD968_01210"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HYE13040.1"
                     /translation="MRKLSRLAVGVMVAALVSAAGVEVAAGAGSSKQRERAERLVRAG
                     EFAEAERMFRELLAKDARDGQSRLGLSLALLKQRKNMDAYDQAARVVAVDPTSARAHA
                     LLGTALLNSGDFRLSVEEFRTALSFKDDDAMAIAGLAMVDFYENRLGASLAGLRRAAF
                     LDGGEPDYLFNLGQVAARHERYAEAATAYENFLRVAPKTDAERRARIRGLIDFLRYLG
                     TQSDLLSVGGPSRVTVPFEIVNNRPIIKVRVNNWKEPLRFVVDTGAGMCVISTTAAER
                     VGLKPVARGGMARAVGGGGRFEIVYAFLQTLNIGEAKVERVPLYIRQFYNEQEPVDGY
                     IGLAVVGKYLTTLDYGAGTMTLLRDDARQTAAAPGPSAVEIPIRTTSSGFWSGEVRVE
                     GVERPVNFIIDTGASISVVSEALSQRFELGRFERGGRIRVYGAAGLAENIQTLLLPQI
                     VFGTHPRRNVYAAVLDMEPINETAGFEQTGIVGGNVLRFYRVTFDFERAVVRLDPLAG
                     GPADKDLKSAPPVVTSQG"
     gene            complement(6045..6707)
                     /locus_tag="VD968_01215"
     CDS             complement(6045..6707)
                     /locus_tag="VD968_01215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13041.1"
                     /translation="MPRDREPVTVEKIRAAHRARRRDIRARLAEFDAVWRGATDERLW
                     EELVFCIFTAGASARMGLGSVEAVRPLLAEGTHEELAFALKGRHRYPVSRSGYIVATR
                     EHLRRDCRMRLRERLEGFDDPLERRDWLARERGIKGLGYKESSHFLRNVGLRGYAILD
                     KHILRCLAEVGVIESPQPPSTRARYLATEETLRAFARDLRIDFDELDLVLWSMKTGEI
                     LK"
     gene            7023..8417
                     /locus_tag="VD968_01220"
     CDS             7023..8417
                     /locus_tag="VD968_01220"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004185 - serine-type carboxypeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HYE13042.1"
                     /translation="MKTTRSLLALIILFSPLAARAQSASTAPPPAQQRPPVLQPTAKT
                     LPRPSTDAPVETDAAIIEDVLPLVEERPAFYNQGVLVEKLSGEVVREQAADQAYNPAS
                     AIKLATALVALRTFGPKHRFATTLWVTGSFDKATGTVTGDLIVSGRDPSFHDEHAVAI
                     ARELNQLGIRTVTGDLVIAPRFTMNFSWSSQRSGERFYDTLDVTRRPAAATRAWNDLR
                     FAMRDQAGLAATPSVAVMGAVYVDSVPKAARVVSTHYSPPLVDILKVLLCYSNNFMAE
                     RLGDQVGGAQGLARFLSTELGISAADMRIATASGLGVNRLTPRHMMRVYRALLDELHK
                     NRLKAADILPVAGIDPGTLEKRYANSVGRGSVIAKTGTLPRTDGGASALVGQMRARNG
                     EVLLFVILNQRGSVSRFRSWQDALVAELQGERGGPTPFTYTPQTLAMRLSASEFDSAR
                     AGNLEEYEPTTANQ"
     gene            9012..10148
                     /locus_tag="VD968_01225"
     CDS             9012..10148
                     /locus_tag="VD968_01225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13043.1"
                     /translation="MAERSRARVRDVRRGAEGFTMTQLLVTVAVVLIVSAFAVMRIAE
                     ARDHMRLTGAAREFASYVEKARVDSIRRHSQGGDATVTVTGPTSYTVLADFNYTGAPT
                     LRTYQLPPGVQFSNMQLTQPDGTVVNNAPAPVAIAFNWRGRTPTAYRVTLQNTRQSTS
                     VVSVSSSGEVSIDRSPIAIQPGAYGNANANPAPIGSGSETGGTSTGYTGGGSTGGGST
                     GGGDTGGGGGSTGGGGGDTGGGGDGGTDPDPDPTATPNPTATPTPTATPSATPSSTPT
                     PSSTPQTAQCTMTLSPSSLALRNGSGSTPQQGTVMVTFQNAPSGQTFSATELNGSHLV
                     LNKTGGGLKISTKNGAGNRGNFTVRVTPTPACGGAQDIAVSVAQ"
     gene            10168..10620
                     /locus_tag="VD968_01230"
     CDS             10168..10620
                     /locus_tag="VD968_01230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13044.1"
                     /translation="MSEWTKATKAGATERGFTMLETVIALFLAMVMGFGAISLFLYSV
                     NYNAGASDRARALALAQRTMETLRARDYLELANSDSTVVVTDYAAAAGTTDRRTFTVR
                     TAIGDYPLVGASRQKAIVVTVTPTNNKRWTGGGVTLRTFRASTEMGSN"
     gene            10652..11293
                     /locus_tag="VD968_01235"
     CDS             10652..11293
                     /locus_tag="VD968_01235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13045.1"
                     /translation="MKTHEPNTKASGAAGFSLMELMVALGITLGIMVIAAQLLAQSLG
                     VRARENARVEAIGDVQRALQVMSREVANAGLGLDGANGIVADDSEDQQLRIIANLNAF
                     TESPGDLLDSDEDVVFTIINNNTGGEPQRLITRQDVNSGQVTSLANRVDELDFDYLAA
                     DGTATTPDQAVKVRITVSVTLPAVGTQGSGGYQPASRVRLVSEATLRNQMLRK"
     gene            11304..12587
                     /locus_tag="VD968_01240"
     CDS             11304..12587
                     /locus_tag="VD968_01240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13046.1"
                     /translation="MKDFKSATPVRAGERGAALVTVMLVSLLMLSAGSALLLSTSMSA
                     ANTVDSTAEAQAYYAAEAGIQGALTALRGNIAPSAPLAGGALIDFRLALTPSDSNAPG
                     DPATAAGVARLSRWLPYSSRTTADTRVSLNSSAPNTCNPGCYSITISEPGTTVTPAGI
                     EPPRLVITSTGFGPKGARKVLRALVSNYRVILDPPATIVAAGGNTINFSLGSSNSSVL
                     SGNGARPAVAVSPANVTTAQGVVNALNEQGGGTQITPSDVGSLGMSVPEPWWLASPDA
                     ARAFLAELRAAAYDQNRVFTSKPADMGTLTSPKMTFIDNYNGGTLSLGAGFQGSGLLV
                     VTGNIETTGSTSFDGVILVLGRGVLTRSGGGDGVMTGSLIIASFDPNDPNADTFGTPT
                     LTVDGGGSLTMQFDPASIGRATRSTGRGVHGVVEN"
     gene            12734..>14050
                     /locus_tag="VD968_01245"
     CDS             12734..>14050
                     /locus_tag="VD968_01245"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE13047.1"
                     /translation="MPDILLVEDKESLRRVLRLTLEGAGYTVAEAEDARSAAQELARA
                     PFRLVLTDLRMPHGSGLDVLRASKAADPEAPVVLMTAYGSIDEAVQAMKDGAHDFLQK
                     PVDSNHLLLLVERALEQARLRTENILLREEWSRRYGFPRIIGESDAIKRAVAETQRVA
                     TTDTTVLLLGESGTGKELFARAVHHLSPRRDRPLVAVNCAAIPETLIESELFGHERGS
                     FTGATERRPGKFELASGGTIFLDEIGELPLSAQGKLLRAIEEKVVDRIGGRAPVPVDV
                     RVVAATNRDLQAAAERGEFRRDLYFRLAVFPVRVPPLRERGDDVALLARHFAAQYGKE
                     LRKREAALSDAAVEALRAHAWPGNVRELENAIERACILADSLTLSPADLGLAGPASPA
                     EGESTAGLDLSGTLAEAAERAARAVERRKIAEALRAHDGNKTRAAEE"
BASE COUNT         2269 a         5031 c         4718 g         2032 t
ORIGIN      
        1 atctcttctt cgctcacgcg cacgcaatga gcgagcagcg ggcgcgcgtc gagcaggccc
       61 gttgcggcca gatgtcgaat cgtcgagacg ccgggcgatg cgaactcgaa gccgcgcgag
      121 gcgtagccct cggcgaacgg cccgcgccct tgtagcataa gcatctcttc ggcgcgcgac
      181 tccgcggcat gggtcatgac aggcaggccc tccgcaatcg cgtagcgggc cagcatcgtg
      241 aggagcggcg ggctcaccgt gtagggcgcg tgcggcgaga gcccgagcct gaccagcccc
      301 gtctcgcccg cgcgcaacga gtcaatcgcg tgccgcgcct tgtcgaactg tccgccagcg
      361 aggctcgcgt ccgggccgaa ggcttcctga tagacgacgc cgcggagccc tgcgtcgcgc
      421 agagcgcgca tggcgttcgc gccctcggag cacgcgtcgc ccacgcaggt gacgcccgcg
      481 cgcgccgcct cgactgctcc ccacgcagcc gagacgtaga ggtcttccgg tgtcatgcgg
      541 aacattcgag cgaccgtgag cttcttaagc cacgcggaga agtccgcctc ctcgcgctca
      601 aggaaaccgc gcatgacggt cagctcaaga tgagtgtggc agttgacgaa gccggccgtg
      661 atgacggcct cgccgaagtc ctcgacggcc gccccgccga agcgcgccga cagctcttcg
      721 cggcggccga cgcccgcgac gcgcgtgcct tcgacggcga cggcgccgtg ctcaatcgtc
      781 tcggaactga ccggcagcac ccagcgcgcg cagtagagtt tcatcgtcgg ccccgcccct
      841 cccttcccgc gccgcgccgt ctcaggacga accacgcggc gcccgagagc ataaccacac
      901 tccccgcgca ggccgcaacc gggcgtatgc cgacggcgtc ggccgcggcg cccgaggcga
      961 gcatcgagcc taccatcatc agcgtcgtca gcgtctcgta ggatgcgaag acgcggccgg
     1021 cgaaggcgtc attggtgcgc ctcatgatga tggtctgctg cgccgtccac cagatggcga
     1081 aattcatctc gcgcgcgacc agcacggcgg ccgcgcccag caggttcggc atcaggctga
     1141 agacggcgag cccgcagccg tcgagcacta gcgagcggcc catgcgcgcg cccaggccct
     1201 cgccagcggc gctattgaag cggcgcgcga gcggggcgcc gagcactccg cccagcccca
     1261 tcgccacgaa gaggacggag atgccgaagt ccgtggggcg ctcgacggcc gcgcgccacg
     1321 cggcgcccca ggaggctacc gcctcctcgc cgagccgcgc gccgaagatg ctgtagagcg
     1381 cacgcgccgc gccgttaccc aggccccacc cggccgcgac tacgaagacg gccgcgagca
     1441 cgcggtcgcg cccgacgtag cgcaggccct ctcggaactc cgagaagaag gcggccggcg
     1501 acgcacgccg cgcgggcctc tcttccgcct cggcccgagc gcggcggccg gcgcggactc
     1561 gccttatcat ctccgccgag gcgaggaagg tcacggcgtt gatgacgaag acggcgtcgc
     1621 gcccgagcgc ggtggcggcg acgccgccga gcgcggagcc gacggcgatg gtcgcggccg
     1681 tcgtcgaggc cgagagcgag ttcgccgcca gcagctcttc agtgccgcca acgaggttcg
     1741 gtatcgtcgc gcgcttggcg gcgttgaaga aggcggagac ggagaagagc gacgcgccca
     1801 cgacgtagat gaccgcgagc gaagaaaggc gcccggcgaa taggaaaccc aaagcgagga
     1861 cggcgcgcgc gatgtctgcc gcaatcatca cgcggcggcg gctcacgcgg tcaaccacga
     1921 cgcccgccac ggggccgaag atgaagagcg gcaggtggcg cgcgatggca tagacggcga
     1981 tggcgagccc gacgctacgg ccgcgcgcga gctcgatggc gagcgccagc accgcgatgt
     2041 tgttgagcca gtcgcctatt tccgagacga cctgaccgag ccagaggcgc cggaagttcg
     2101 ggttagacga gagcagctcg cggtatgtca acgcccgccc gccttcttct cccggtatcg
     2161 gcgcagtatg ttcgagacgt aggcgcgcgt ggagggaatg tctatgcgct cgatgaactg
     2221 ctcggccgtg agcttcggct cgcccggcgc caccctgtcc cactcggcgg cgcggctcgg
     2281 gcccgcgttg taggcggcca cgacgcgcgc ctccgccccc ggcgtgtcgc ggtaggcctt
     2341 cgcaatcttc tccaagtacc agcagccgac ctgtatgttc cgctcggggt cgagcagcgc
     2401 gccctccggg tcgctgcgca tgcggcccgc cagctctcgc atgccggtct cggccgccca
     2461 ctcgcgcccg accgtcgggg tgacctgcat gagcccgacc tcgccggcct cgcccttctt
     2521 ccacgggctg aagtaggtct cctcgtgaat gatgctccac acaaggtcgg ggtcgagccg
     2581 gtaaacggcc gcctgccgcg cgatgagcgc gtcgtagcgg tgaacccagt atcggttgaa
     2641 gtagtaaagc ccggcggcgg tgagggcgag caggatgagg gcggcgacga ggaagcgtct
     2701 cattacagta ggcagaaggc agaaggcaga gggcagtaga aatactctct catccgtgtc
     2761 gttgcggcga aagcgccggc ggccattccg cgaacctgct gcttagtgcc ttctgcctac
     2821 ttctttcagt tcccccgctt caggtgcgac cagagcgccg acttggggac gcccatgtcg
     2881 cgcccctcgt agcgcgagag gagcgcgcgg cggtcgagga catggccctg tagccaaacg
     2941 tcggccgaga gcgtggctcc gaccgagagc gggccgccgc gcagcgcacg gctgttgacg
     3001 aggacttcga ggcggagacg ttcgaggtcg aggtaggccc agtagagctc gctgcccgag
     3061 agcgggttgc gcagcgtctt gaacgagacg acgcggccgg ccaggcacca gtcgttctcg
     3121 tgcgcggcgc gcgaaggcgc ggcctcttcg agcggctgcc agcgcgcgcg ctgctcgccg
     3181 cggcccggcg catgtacgcg cgcgcgatac gcgagcccgc aaaggccgac gtgcagctcc
     3241 tgcgcgcgga agccctcggg gccgacctcg gtcaagttct gaagctcgaa gagcacctcg
     3301 gtctcggagc cgtcgcagta gccgtggaca atggcctcgc cgtcctcgtc gtactcggtc
     3361 agagcccacg ggcttatgcg ctgcgcgtag cgcgcgcgga atccgggccg gcagtcggcg
     3421 tagaagatct cccccgtccc ggactcgtag agcaccgtcc agacttccaa accttcgccc
     3481 aacttccagc agcggccgtg aagcacgacc ccgcggcgcg atagctgcgt cggctcgccc
     3541 tggtcgcccg cgcgctcggc gaggtggttg aagtccttct cgctcggcac gtcgagccct
     3601 atcgcctcga acgtctcttc cataaatctc taaatgctcg aactaccccg tcgccctctt
     3661 gcgctgagcc ggcttcggcg cggcctcctc ctggccggcg cgcggcgcgc gcgtgcggaa
     3721 gccgcggatg ttgcgcgcgg ggccgtggcg cgggcgcgcg ccggagcgca ccatctccgc
     3781 gaacagctca acgtcgtagt ccgcctcgcg cgacatctct tcgcgtatcg agtgcagctc
     3841 ttcgaggaat ctcggcttgc ggtacatcgc aggtgaatcg taaatcggaa atcaaaaatg
     3901 gtaaagagcg gtgggcggat accggcggcg ggcgggagtt gcctctctca gtccgacgcc
     3961 agccattttc tattcgccgc tcattgcttt tccgtcgtct ccgagacgag gaactcgggc
     4021 gtgactatct gcgggacgaa gaacccggcg gccgtgttga agaggcgtat gcgcgcctgc
     4081 cggcggacgt tggcgaggtg gccgaagttc cacgtgacga ggtagtcaat cttgtggaac
     4141 gaggccaggg cgacgtggac tgcgtcgccg atgtacttgc ggtggaagat gccgcgcgag
     4201 atgtagccct cggcgagtat ggccgcctcc tcggatagct ccaccctttc gagcggctcg
     4261 acgagcttga ggtaggccgt gcggtgcggc tcaggcacgc gctctaattc gcggacgacg
     4321 aggggcgaga tgacggcgtt gtactccgac atctcgcgct cccaccagcg catcgtcagg
     4381 tcgcgccgga acggctcgcc gttgtcgagg taggcgccga cgaccgaggt ctcgaggtag
     4441 atgctctgct tcatccctgg ctcgtgacga cgggcggcgc ggacttcagg tctttgtcag
     4501 cggggccgcc cgcgagtggg tcgaggcgga cgacggcgcg ctcgaagtcg aaggtcacgc
     4561 ggtagaagcg cagtacgttg ccgccgacga tgccggtctg ctcgaagccg gccgtctcgt
     4621 taatcggctc catgtcgagc acggccgcat agacgttgcg gcgcgggtgc gtgccgaaga
     4681 ctatctgcgg cagcagcagc gtctgtatgt tctcggccag gcccgccgcg ccgtaaaccc
     4741 ttatgcggcc gccgcgctcg aagcgcccca gctcgaagcg ctgcgagagc gcctcggaga
     4801 cgaccgagat gctcgcgccc gtgtctatga tgaagttgac gggccgctcg acgccctcga
     4861 ccctgacctc gccgctccag aagcccgacg acgttgtgcg gatcgggatt tcgacggccg
     4921 aggggccggg cgcggcggcc gtctgccgcg cgtcgtcgcg caggagcgtc atagtgcccg
     4981 cgccgtagtc gagcgttgtc aggtacttcc ccacgacggc gaggccgatg tagccatcaa
     5041 ccggctcctg ctcgttgtag aactgtcgta tgtagagcgg cacgcgctct accttcgcct
     5101 cgccgatgtt caaggtctga aggaaggcat agacgatctc gaagcggccg cctccgccga
     5161 cggcgcgcgc catgccgccg cgcgcgacgg gcttgaggcc gacgcgctcg gccgcggtgg
     5221 tcgagatgac gcacatgccc gcgcccgtgt ccacgacgaa gcgcagaggc tccttccagt
     5281 tgttgacgcg aaccttgatg atggggcggt tgttgacgat ctcgaaaggc acggtgacgc
     5341 gcgacgggcc gcctacggag agcaggtcgc tctgcgtgcc gaggtaacgc aggaagtcta
     5401 tgaggccgcg tatgcgcgcg cggcgctccg cgtccgtctt gggcgcgacg cggaggaagt
     5461 tctcgtaggc cgtcgcggcc tcggcgtagc gctcgtggcg ggcggcgacc tgcccgaggt
     5521 tgaagaggta gtcgggctcg ccgccgtcta agaaagcggc gcggcgcagg cccgccaggc
     5581 tcgcgcccag gcggttctcg tagaagtcaa ccatcgcgag gccggctatg gccatcgcgt
     5641 cgtcgtcctt gaagctcagg gccgtgcgga actcctcgac cgagaggcgg aagtcgccgg
     5701 agttcaggag cgccgtgccg agcagggcgt gcgcgcgggc cgaggtcggg tcaacggcga
     5761 cgacgcgcgc ggcctggtcg taggcgtcca tgttcttgcg ctgcttgagg agcgcgaggc
     5821 tcaggccgag gcgcgactgc ccgtcgcgcg cgtccttcgc cagcagctcg cggaacatcc
     5881 gctcggcctc ggcgaactcg cccgcgcgca ccagccgctc tgcccgctcg cgctgcttgc
     5941 tgctcccggc cccggccgcg acctctacgc ccgccgccga aaccaacgcc gcgaccataa
     6001 ccccaaccgc aaggcgtgac agctttctca taagtggctc ccggctactt cagaatctcc
     6061 ccggtcttca ttgaccagag cacgaggtcg agctcgtcga agtctatgcg gaggtcgcgc
     6121 gcgaaggcgc gcaacgtctc ttcggtcgcg aggtatcgcg cgcgcgtcga gggcggctgc
     6181 ggcgactcga tgacgccgac ctcggcgagg cagcgcagta tgtgcttgtc gaggatggcg
     6241 tagccgcgca ggccgacgtt acgtaggaag tggctcgact ccttgtagcc caagcccttt
     6301 atcccgcgct cgcgcgcgag ccagtcgcgc ctctccaacg ggtcgtcgaa gccttcgagc
     6361 cgctcgcgca ggcgcatacg gcagtccctg cgcaggtgct cgcgcgtggc gacgatgtag
     6421 cccgagcgcg agaccgggta gcggtgccgg cccttgagcg cgaaggccaa ctcctcgtgc
     6481 gtcccctcgg ccaggagcgg cctgacggcc tcgacggagc cgagccccat ccgcgccgag
     6541 gcgcccgccg tgaagatgca gaagaccagc tcctcccaga gccgctcgtc cgtggccccg
     6601 cgccagaccg cgtcgaactc cgcgaggcga gcccgtatgt cgcgccgccg cgcgcggtgc
     6661 gcggccctta tcttctcgac tgtgacgggc tctctgtctc gcggcacgtg tcgcgctttt
     6721 caagggcgag gtctgctccg aacgggtcgg attttaggag cgcgcttccg gcgatgtcaa
     6781 cgaagaacgg ttcaaggcag cggcgcagct acttttcgga acgccggttg ctttgcgcgt
     6841 ttagtagcct cgcgtgcctg catgcatccc gtacgatgcg tgccggcatc aaagaggttc
     6901 gccccccgga actcttcccg cgtgaaaatt cggcgcgctt gtgcacggcg gctcttgtgc
     6961 tatcatgtcg cgcctttcaa acagcttacg acgggaaggc ccggcggtaa ggagtgagcg
     7021 agttgaagac gacgcgaagc ttactggctc tcatcatcct cttctctccc ctcgcggcgc
     7081 gcgcgcagtc cgcgagcact gcgccgcccc ccgcgcagca gcggccgccc gtgctccagc
     7141 cgacggcgaa gacgctgccg cgcccctcca ccgacgcgcc cgtcgagacc gacgccgcga
     7201 taatcgaaga cgtgctgccg ctcgtcgagg agcggccggc cttctacaac cagggcgtgc
     7261 tcgtagagaa gctctcgggc gaggtcgtgc gcgagcaggc cgccgaccag gcttacaacc
     7321 cggcctccgc catcaagcta gccaccgccc tcgtagccct gcgcacgttc gggcctaagc
     7381 accgcttcgc cacgacgctc tgggtcaccg gctctttcga caaggcgacg gggactgtca
     7441 ccggcgacct catcgtttcc gggcgcgacc cttcgttcca cgacgagcac gcagtagcca
     7501 tcgcgcgcga gcttaaccag ctcggcatac gcacggtgac gggcgacctc gtgatcgcgc
     7561 cgcgcttcac gatgaacttc agttggtctt cgcagcgctc gggagagcgc ttctacgaca
     7621 cgctcgacgt gacgcggcgc cccgcggccg ccacgcgcgc gtggaacgac ctgcgcttcg
     7681 ccatgcgcga ccaggcgggg ctcgccgcga cgccgagcgt cgccgtgatg ggcgccgtct
     7741 atgttgactc ggtgccgaag gccgctcgcg tcgtctcgac gcactactcg ccgccgctcg
     7801 ttgacatact caaagtcctc ctctgctact cgaacaactt catggccgag cgcctcggcg
     7861 accaggtcgg cggcgcgcag gggctcgcgc ggttcctctc caccgagttg gggatatcgg
     7921 ccgcggacat gcgcatagcg acggcgagcg gcttgggcgt caaccgcctc acgccgcgcc
     7981 acatgatgcg cgtctatcgc gcgctcctcg acgagttgca caagaacaga ctgaaggccg
     8041 ccgacatact gcccgtcgcc ggcattgacc ccggcacgct ggagaagcgt tacgccaaca
     8101 gcgtcgggcg cgggagcgtc atcgccaaga ccggcactct gccgcgcacc gacggcggcg
     8161 ccagcgccct cgtcggccag atgcgcgcgc gcaacggcga ggtgctgctc ttcgtcatcc
     8221 tcaaccagcg cggcagcgtc tcgcgcttcc gctcctggca ggacgcgctc gtcgcagagc
     8281 ttcagggcga gcgcggcggc ccaaccccct tcacctacac gccgcagacg ctggcgatgc
     8341 gcctctccgc ttcggagttc gacagcgcgc gcgccggcaa cctcgaagag tacgagccga
     8401 cgactgctaa ccagtaatct ctgtgaaaac gcgcgcgccc cggcaggccc gagagcctgc
     8461 cggggcgctc ctcgccggcg cgagcagtgt gtgcggtact gcccgcggcc gacgattctc
     8521 gcggggttgg ccgggctcgc tgtcgtgcga aggtttgcct gatagcggcg ccgcaccgcg
     8581 ccttcgctag tcagtctgcc cgaccggcca cacttcggcc gctggcgtag taagcaactc
     8641 acaagccgcc cccgcgcacg acagcctccc gcgcccttaa ctcactctct tcgtcaaact
     8701 tgcgccccgc gcctcgaccg gccgggcgcc cgcctgcgac gcacgcccgc cgccgcttct
     8761 gtttcagtcg gtaacaaggt gtgtaaccgg ctgccttcct gctgcgggcg ctggccgaag
     8821 ttgtgaagca tccttcccac actgtcactg aaggtgacgt gcgccgcctc acttcggccg
     8881 cccgcctgcg cgaaacgcgc gggttttccg cgaaaacccg tctggcaccg gccttgccga
     8941 agggctctgc gccggcgctt ttcggagcgc ggtcaatttt gaggctgagg aagctgcacg
     9001 gaggcaggca tatggccgag agaagcaggg cgagagtcag ggacgtgagg cgcggcgctg
     9061 aaggcttcac catgacgcag ttgctggtca cggtggccgt cgtgctgatc gtgtcggcct
     9121 tcgccgtcat gcgcatcgcc gaggcgcgcg accacatgcg cctgacgggc gcggcgcgcg
     9181 agttcgcgag ctacgtcgag aaggcgcgcg ttgactccat acgccgccac tcgcagggcg
     9241 gcgacgcgac cgtcacggtc acgggcccga cgagctacac cgtgctcgcc gacttcaact
     9301 acacgggcgc gccgacgctt cgcacctacc aactcccgcc cggcgtgcag ttctcgaaca
     9361 tgcaacttac gcagccggac ggcaccgtcg tcaacaacgc gccggcgccc gtcgccatag
     9421 cgttcaactg gcgcggccgc acgccgacgg cctaccgcgt caccctgcag aacacacggc
     9481 agagcacgag cgtcgtgagc gtaagcagct ccggcgaggt ctccattgac cgcagcccca
     9541 tcgccataca gcccggcgcc tacggtaacg ccaacgccaa cccggcgccg ataggcagcg
     9601 gcagcgagac cggcggcacg agcaccggct acacgggcgg cggctcgacc ggcgggggct
     9661 cgaccggagg cggcgacacc ggcggaggcg gcggctcgac cggcggaggc gggggcgaca
     9721 ccggcggagg cggggacggc ggtacagacc ccgaccccga cccgaccgcg acgcccaacc
     9781 ccacggccac gccgacgccc accgcgaccc cgtccgccac gcccagctcg acgcccacgc
     9841 cgtcgtccac gccgcagacg gctcagtgca cgatgacgct cagcccgagc tcgctggcgc
     9901 tcaggaacgg cagcggcagc acgccgcagc agggtactgt gatggtcacg ttccagaacg
     9961 cgccgtcggg ccagaccttc agcgccacag agctgaacgg cagccacctc gtgctcaaca
    10021 agacgggcgg cggcctgaag atttccacga agaacggcgc cggcaaccgc ggcaacttca
    10081 cagtgcgcgt caccccgacc ccggcctgcg gcggggcgca ggacatcgcc gtgagcgtcg
    10141 cgcagtagcg acttcgggag gctgaagatg agtgaatgga cgaaggctac aaaagcgggg
    10201 gcgaccgagc gcggcttcac catgctcgag acggtcatcg cgctcttcct ggcgatggtg
    10261 atgggcttcg gcgccatctc gctattccta tactcggtga actacaacgc cggggcgagc
    10321 gaccgcgcgc gcgccctcgc cctcgcgcag cgcacgatgg agactctgcg ggcgcgcgac
    10381 tacttggagc tcgcgaactc tgactccacg gtcgtcgtca cagactacgc cgccgcggcc
    10441 ggcaccaccg accgccgcac cttcactgtc cgcacggcca tcggcgacta cccgctggtg
    10501 ggggcctcgc ggcagaaggc gatagtcgtc acggtgacgc cgacgaacaa caagaggtgg
    10561 acgggcgggg gcgtgacgct caggacgttc cgcgcctcca cggagatggg cagcaactga
    10621 gggcgccgac ggcgcggccg gagcaacacc catgaagacg cacgaaccga acacgaaggc
    10681 cagcggcgcg gccggcttct cgctcatgga gctgatggtg gcccttggca tcacgctggg
    10741 catcatggtt atagcagcgc agctcctggc gcagtcgctc ggcgtgcgcg cccgcgagaa
    10801 cgcgcgcgtc gaggccatag gagacgtgca gcgcgccctc caggtgatgt cgcgcgaggt
    10861 ggcgaacgcc gggctcgggc tcgacggggc gaacggcatc gtcgcagacg actcggaaga
    10921 ccagcagctt cgcatcatcg ccaacctcaa cgccttcacc gagagcccgg gcgacttgct
    10981 cgactccgac gaggacgtgg tcttcaccat catcaacaac aacacgggcg gcgagccgca
    11041 gcgcctcatc acgcgccagg acgtgaactc ggggcaggtc acttcgctcg ccaaccgcgt
    11101 tgacgaactc gacttcgact acctcgccgc cgacggcact gccacgacgc ccgaccaggc
    11161 cgtgaaggtg aggatcacgg tcagcgtcac gctgcccgcg gtcggcacgc aggggagcgg
    11221 cggctaccag ccggcgtcgc gcgtgcgact cgtctccgag gccacgctgc gcaaccagat
    11281 gctcaggaag tgagggggat cggatgaaag acttcaagtc agcaacgcca gtgcgggccg
    11341 gcgagcgcgg cgcggcgctc gtcaccgtca tgctcgtctc gctgctcatg ctctcggccg
    11401 gcagcgcgct cctgctctcg accagcatgt cggccgccaa caccgtggac tcgaccgccg
    11461 aggcgcaggc ctactacgcg gccgaggccg gcatacaggg cgcgctcacg gccctgcgcg
    11521 gcaacatcgc gccgagcgcg ccgctcgccg ggggcgccct catagacttc cgcctggcgc
    11581 tgacgccctc ggactcgaac gcgccgggcg acccggcgac cgccgcgggc gtcgcgcgcc
    11641 tctcgcgctg gctaccctac agcagccgca cgaccgccga cacgcgcgtg agcctcaaca
    11701 gcagcgcccc gaacacatgc aaccccggct gctactccat aacgatctcg gagcccggga
    11761 cgaccgtcac gcccgccggc atcgagccgc cgcgcctcgt catcacctcg acgggcttcg
    11821 gcccgaaggg cgcgcgcaag gttctgcggg cgctcgtgag caactaccgc gtcatactcg
    11881 acccgcccgc gaccatcgtc gccgcgggcg gcaacaccat aaacttcagc ctcggcagct
    11941 cgaactcctc ggtactttcg ggcaacggcg cgcggccggc ggtggccgtc tcgccggcca
    12001 acgtcacgac ggcgcagggc gtcgtcaacg ccctgaacga acaggggggc ggcacgcaga
    12061 tcacgccctc cgatgtcggc tcgctcggga tgtcggtgcc ggagccgtgg tggctcgcga
    12121 gcccggacgc ggcccgcgcc ttcctcgcgg agctccgcgc ggcggcctac gatcagaacc
    12181 gcgtcttcac ctccaagcct gcggacatgg ggacgctgac ctcgcctaag atgaccttca
    12241 tagacaacta caacggcggc acgctcagcc tcggcgcggg cttccagggg tcgggccttc
    12301 tcgtcgtcac cggcaacatt gaaaccacag gcagcacgag cttcgacggc gtcatcctcg
    12361 tcctcggccg cggcgtgctg acccgcagcg gcggcggcga cggcgttatg accggctcgc
    12421 tcatcatcgc cagcttcgac ccgaacgacc cgaacgccga cacgttcggc acgcccacgc
    12481 tgaccgttga cggcggcggc agcctgacga tgcaattcga ccccgcctcc atcggcaggg
    12541 cgacgcgctc gacgggccgc ggcgtgcacg gcgttgtcga gaactgacgc cccgcacggg
    12601 cggcttaagg ccagaagcga ggcgccgcgg gcttgaaggc cccgcggcgc ctcggccttt
    12661 cccggcgccc ccttgcttga cacgcaaaac cgagaagtgg acattagtcg gcggccgact
    12721 gtcagcttct cttatgcccg acatcctgct cgtcgaagac aaggagagtt tgaggcgcgt
    12781 gctccgcctc acgctcgaag gcgccggcta caccgtggcc gaggctgagg acgcgcgctc
    12841 ggcggcgcag gagcttgcgc gcgccccctt ccggctagtc ctcacggacc ttcggatgcc
    12901 gcacggctcc ggcctcgacg tcctgcgcgc ctcgaaggcc gcagaccccg aagcgcccgt
    12961 cgttctcatg acagcctacg gctcgataga cgaggccgtg caggcgatga aggacggcgc
    13021 gcacgacttc ctgcagaagc ccgttgactc gaaccacctg ctcctgctcg tagagcgcgc
    13081 tctcgaacag gcgcggctgc gcacggagaa catactgctg cgcgaggagt ggtcgcgccg
    13141 ctacggcttc ccgcgcatca tcggcgagtc ggacgccatc aagcgcgccg tcgccgagac
    13201 gcagcgcgtc gccacgaccg acacgacggt gctgctgctc ggcgagtccg gcacgggcaa
    13261 ggagcttttc gcgcgcgccg tccaccacct ctcgccccgg cgcgaccgcc ccctggtcgc
    13321 cgtcaactgc gccgccatcc ccgagacgct catcgagtcg gagctgttcg gccacgagcg
    13381 cgggtcgttt accggcgcga ccgagcggcg ccccggcaag ttcgagctcg cctccggcgg
    13441 caccatcttc ctcgacgaga taggcgagct ccccctctcg gcgcagggga aactcctgcg
    13501 cgccatcgag gagaaggtcg ttgaccgcat cggcggccgc gcgcccgtgc ccgtggacgt
    13561 gcgcgtcgtc gcggcgacga accgcgacct acaggccgcg gccgagcgcg gcgagttccg
    13621 ccgcgaccta tacttccgcc tcgccgtctt ccccgtgcgc gtcccgcccc tgcgcgagcg
    13681 cggcgacgac gtggcgctgc tcgcgcgcca cttcgccgcg cagtacggca aggagcttcg
    13741 caagcgcgag gccgcactct cagacgcggc cgtcgaggcg ttgcgcgcgc acgcgtggcc
    13801 cggcaacgtc cgcgagctgg agaacgcaat cgagcgcgcc tgcatactcg ccgactcgct
    13861 cacgctctcg cctgcagacc tcggcctcgc aggccccgcc tcgcccgccg agggcgagag
    13921 cacagccggg ctcgacctgt cggggacgct cgcggaggcg gccgagcgtg ccgcccgcgc
    13981 cgtcgagcgc cgaaagatag ccgaggccct gcgcgcccac gatggcaaca agacgcgcgc
    14041 cgcagaggag
//
LOCUS       DASPKR010000042         2069 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_4684, whole genome shotgun sequence.
ACCESSION   DASPKR010000042 DASPKR010000000
VERSION     DASPKR010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2069)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4684"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..229
                     /locus_tag="VD968_01250"
     CDS             <1..229
                     /locus_tag="VD968_01250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13048.1"
                     /translation="TREEIEAHFAGRGYAQLKSDLADAAVAFLQPYQERVRSISDEEL
                     SRILREGAEKARAIAAETMRQAKERMGIVGA"
     gene            236..1066
                     /locus_tag="VD968_01255"
     CDS             236..1066
                     /locus_tag="VD968_01255"
                     /inference="COORDINATES: protein motif:HMM:NF014654.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HYE13049.1"
                     /translation="MSNEHTETPRPTEEATVASAAEGQPINVAGAKPEISTNQEGDSL
                     KLVLGEFAGPLDLLLYLIRQEQVSIYDIPIARITDEYLRYLRMMQGMDITMASDFLVM
                     AATLIEIKSRMLLPRDPAVSEEEQLADDPRRELVERLLEHQKYKAAAEMLWSRATVER
                     AVFTRAPIETDKNNPEVAAGAFDLLRVFQEILARRKEEVLLEIEREEVTMAEMLERLR
                     NSIFSAGELNLREFFERTQTRRELVLAFLSVLELVRTTEIKLFQSQTFGDIVARVSNQ
                     "
     gene            1070..1963
                     /gene="scpB"
                     /locus_tag="VD968_01260"
     CDS             1070..1963
                     /gene="scpB"
                     /locus_tag="VD968_01260"
                     /inference="COORDINATES: protein motif:HMM:TIGR00281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HYE13050.1"
                     /translation="MSKSSRKKRPEGGSEDAGTSESRAEAVAELDAALDEAPAGGDGS
                     AADRGGPHGLTDRVDPAGLASEEETGFDDEEERDVVIHDADAEDRRDEFERRAAEMRA
                     PGGADEGEGEVAPGGQPRQLAELMAICEALIFVSEEPLPAKAIADLLKEERGWVQMAV
                     EELAKEFNERNAGLMLREVAGGWQFATRPEHHEHIRAYLKSRPSAKLSLPALETLAVI
                     AYKQPVTVPEILEIRGVQSSSAIKTLLDKRLIVAKGRKETVGRPMMYGTSKEFLLQFG
                     LKDLSELPNVEDFEDLAGGAG"
BASE COUNT          409 a          676 c          698 g          286 t
ORIGIN      
        1 gacgcgcgaa gagattgagg cgcacttcgc aggccgcggc tacgcgcagt taaagagcga
       61 cctggccgac gcagccgtcg cgttcctcca gccttaccag gagcgcgtgc gctccatctc
      121 cgacgaggag ctgagccgca tcctgcgcga aggggccgag aaggcgcgcg ccatcgcggc
      181 cgagacgatg cggcaggcga aagagcgcat ggggattgtg ggggcttaaa cgaacttgtc
      241 gaacgagcac acagagacgc cgaggcccac cgaagaggcg acggtcgcca gcgcggccga
      301 aggccagccc atcaacgtcg cgggcgcgaa gcccgagatt tcgacgaacc aggagggcga
      361 ctcgctcaag ctcgtcctcg gcgagttcgc gggcccgctt gacctcctgc tctacctcat
      421 ccggcaggag caggtcagca tctacgacat ccccatcgcg cgcatcacgg acgagtacct
      481 gcgctacctg cgcatgatgc agggcatgga catcacgatg gcgagcgact tcctcgtgat
      541 ggcggccacg cttatagaga tcaagtcgcg catgctcctg ccgcgcgacc ccgcggtgag
      601 cgaagaagag cagctcgccg acgacccgcg ccgcgagctg gtcgagcggc tccttgagca
      661 ccagaagtac aaggccgcgg ccgagatgct ctggtcgcgc gcgacggtcg agcgcgcagt
      721 cttcacgcga gccccaatcg agacggacaa gaataacccg gaggtcgccg caggcgcctt
      781 cgacctgctg cgcgtcttcc aggagattct cgcgcgcagg aaggaagagg tgcttctgga
      841 gatagagcgc gaggaggtca cgatggccga gatgctcgag cgcctgcgca actccatctt
      901 ctcggccggc gagctgaatt tgcgcgagtt cttcgagcgc acgcagacgc gccgcgagct
      961 ggtgctcgcg ttcctctccg tcttagagct agtgcgcacc accgagataa agctcttcca
     1021 gtcccagacc ttcggcgaca tcgtcgcgcg cgtcagcaac caatagaaga tgagcaagag
     1081 cagcaggaag aagaggcccg agggcgggag cgaagacgca ggcacttccg agtcgcgcgc
     1141 cgaggccgtg gccgagctcg acgcagcgct cgacgaagcc ccggcgggcg gtgacggcag
     1201 cgcagccgac cggggcgggc cgcacggcct gaccgaccgc gttgaccctg cggggctcgc
     1261 ttcagaagaa gagacgggct tcgacgacga ggaggagcgc gacgttgtca tacacgacgc
     1321 cgacgcggaa gaccgccgcg atgagttcga gcggcgggcc gcggagatgc gcgcccccgg
     1381 cggcgccgac gagggcgagg gcgaagtcgc tccgggcggc cagccccgac agctcgccga
     1441 gcttatggct atctgcgagg ctctcatctt cgtctcggag gaaccgctgc ccgcaaaggc
     1501 catcgcagac ctcctgaagg aagagagggg ctgggtgcag atggccgtcg aggagctcgc
     1561 gaaggagttc aacgagcgca acgccgggct gatgctcagg gaggtcgccg gcggctggca
     1621 gttcgccacg cgccccgagc accacgagca catacgcgcc tacctgaagt cgaggccgag
     1681 cgcgaagctc tccctgcccg cgctcgaaac gctcgccgtc atagcctaca agcagcccgt
     1741 caccgtcccc gagattctcg aaatacgcgg cgtgcagtcc tcatcggcga taaagacgct
     1801 gctcgacaag cgcctcatcg tcgcgaaggg gcggaaggag acggtcggcc gcccgatgat
     1861 gtacggcacg tcgaaagaat tcctcctgca attcggcctc aaggatttga gcgagctgcc
     1921 caacgtcgag gacttcgaag acttggcggg cggcgccggg tgaagcctta ccagtatgct
     1981 taagagaaac agcctgttcg tcgccatcgc ctgcgccgcc ttcgctctca cggcctcccc
     2041 cttggcgcgc gcgcaagggg aggagcttc
//
LOCUS       DASPKR010000043         2037 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_523385, whole genome shotgun sequence.
ACCESSION   DASPKR010000043 DASPKR010000000
VERSION     DASPKR010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2037)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2037
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_523385"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..756)
                     /locus_tag="VD968_01265"
     CDS             complement(<1..756)
                     /locus_tag="VD968_01265"
                     /inference="COORDINATES: protein motif:HMM:NF012350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HYE13051.1"
                     /translation="MQVETVPQKSVGVGAGHGGAEPVREWHALTAEEGFARLQSGPRG
                     LTDAEAARRLGEFGPNELQASGQISPWTILLEQFKNVLIIILLLATALSAFLGHGVEA
                     VAITVIVLFAVVLGFVQEYRAERAIEALREMAAPNATAVRDGREKRVPARELVPGDLI
                     LLATGDKVPADARLVEAVNLQTVEAALTGESAPVEKHTERLADEALPTGDRKNMAYAG
                     TAVTYGRGRALVVATGMATEFGKIARMLEEVETT"
     gene            complement(746..1657)
                     /locus_tag="VD968_01270"
     CDS             complement(746..1657)
                     /locus_tag="VD968_01270"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016208 - AMP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HYE13052.1"
                     /translation="MKAPSKILIAYDGSACSDAALQDLRRAGLPPDADVVVLTVADVI
                     VPPPDEELPGQPAVRIPEFERHTRETREKAVKEARALAERAAGLVKDEFPSWRVKAEV
                     DCDSPPLALIKMADRLQADLIVVGSHRHAVAGGRLILGSTSQRVLYDAGCSVRVARCS
                     SGRREGPVRIIVGFSGTPDAEEAVAAVAARAWPEGSEARIVTAGRGPGRDSTSGAAER
                     LRATGLSVSEFVREGDPAHVLIAEAEGWDADSIFVGTRGLHGFQHLLHGSVASAVAGR
                     AQCSVEVARAARLAAPDESKGEYTHAG"
BASE COUNT          291 a          744 c          687 g          315 t
ORIGIN      
        1 cgtcgtctcg acctcttcga gcatccgcgc gatcttgccg aactcggtcg ccatccccgt
       61 ggcgacgacg agcgcgcggc cgcgcccgta ggtcacggcc gtgccggcgt aggccatgtt
      121 cttgcggtcg ccggtcggga gagcctcgtc cgcgagccgc tccgtgtgct tctcgaccgg
      181 cgccgactcg cccgtcagcg ccgcctccac cgtctgcaag ttcaccgcct caacgagccg
      241 cgcgtcggcc ggaaccttgt cgcccgtcgc gagcagaatc aagtcgccgg ggacgagctc
      301 acgcgcgggg acgcgcttct cacgtccgtc ccgcacggcg gtcgcgttgg gcgcggccat
      361 ctcgcgcagc gcctcgatgg cgcgctcggc gcggtactcc tgcacgaagc cgagcacgac
      421 cgcgaagagc acaatcacgg tgatggcgac agcctcgacc ccgtggccga ggaaggccga
      481 gagcgccgtc gccagcagca ggatgatgat gaggacgttc ttgaactgtt cgagcaggat
      541 cgtccaggga gagatttggc ccgaggcctg tagctcgttc gggccgaact ccccgaggcg
      601 gcgcgcggcc tcggcgtccg tcaggccgcg cgggccggac tgaagcctcg cgaagccctc
      661 ctcggccgtg agcgcgtgcc actcccgtac aggttcggcg ccgccgtggc ccgcccccac
      721 gccaacactt ttttggggga cggtttcaac ctgcatgtgt gtattctccc ttcgactcat
      781 ccggggccgc gagccgtgcc gcgcgggcca cctcgaccga gcactgcgcg cgcccggcca
      841 ccgccgacgc gacgctgccg tgcagcaggt gttggaagcc gtgcagcccc ctcgtgccga
      901 cgaagatgga gtcggcgtcc cacccctcgg cctcggcgat gaggacgtgc gccgggtcgc
      961 cctcgcggac gaactccgac acgcttagcc ccgtggcgcg cagcctctcc gccgccccgc
     1021 ttgtcgagtc gcggcccggc ccgcgtcccg cggtgacgat gcgcgcctcg ctgccctccg
     1081 gccacgcccg cgccgcgacc gcggcgacgg cctcctccgc gtcaggcgtg ccgctgaacc
     1141 cgacgattat ccgtaccggg ccttcacgcc gcccgctgga gcagcgcgcc acgcgcaccg
     1201 agcaccccgc gtcgtacaaa accctctggg acgtgctgcc gaggatgagg cggccgcccg
     1261 ccaccgcgtg cctgtgagag ccgaccacaa tgaggtcggc ttgcaggcgg tcggccatct
     1321 tgattaaagc cagggggggc gagtcgcagt ccacttcggc cttcacccgc cagcttggga
     1381 actcatcttt aacaagcccc gccgcgcgct cggccaaagc ccgcgcctcc ttgacggcct
     1441 tctctctcgt ctcacgggtg tgacgctcaa actcggggat gcgaaccgcg ggctggccgg
     1501 ggagttcctc gtccggcggc gggacgatga cgtcggccac cgtcagaacc accacgtcgg
     1561 cgtccggggg cagcccggcg cgtcgtaaat cctggagggc cgcgtcggag caagccgacc
     1621 cgtcgtaagc gatcagtatt ttagagggcg ctttcatcat ttacctcctc gcatcgggca
     1681 cacgtctgac aagcacggga ggctgacggc gctgggcggg cgggcgtgta cgctcaggca
     1741 ggtggcaggg agggtgggtg aagacgccgg cgcgggccgg atagcacggc agccgttcgg
     1801 ctggcgtgga agctcagtca tgcccttccc cttttcgcgc gtcagcgcaa gcgtgacttg
     1861 cggcggccgc gcaaaaggga aagacctcct gcgctgccgg gtgcagccgc aaaaggtctt
     1921 ggtcatcgag ctgtaagttt tggctctccc cggtgcgccg ggcgccttca cgtcgggcgc
     1981 cgtattgacg gcccaccgga cccgcaagcg gtgcgggcga cctactcccc tttcggg
//
LOCUS       DASPKR010000044        17715 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1558790, whole genome shotgun sequence.
ACCESSION   DASPKR010000044 DASPKR010000000
VERSION     DASPKR010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 17715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17715)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17715
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1558790"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1302)
                     /locus_tag="VD968_01275"
     CDS             complement(<1..1302)
                     /locus_tag="VD968_01275"
                     /inference="COORDINATES: protein motif:HMM:NF024821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13053.1"
                     /translation="MLPSFRPLAAAALFALVFACAPSSLAQERDEFGEAAADPVKLFN
                     QGQDAHARKEYELALEFYEEALKLRPEFPEAEHQRGVALVALKRLPEAEAAFRRAMQL
                     RPAWALPPLTLGLALAREPGRAADAEALLRRVLEIDAKSTHALSALAEFRARAGDKAE
                     ALALLRRATDASPGDAALWLARGAAEREAKDNSAAVKSFERALAIEPSNTAARMVRAE
                     LLIESGDAARASEELKSLEAAAKSDASLLISLANLYGMAGRAEDAQRVYESLPEEAKA
                     SDAGRRLGDALRVRCEDTQEARESLEKLVARDPKNASALACLGKLYRTSAPERSLEYY
                     GRAARLKPDDADYATGYAAALIQLRRFTEAAGILQQVLKAAPEHYEAHANFAAALYEL
                     KLYKQAIVEYKWIERARPELAIVHFLTGTAHDRLGEFEEALA"
     gene            1585..2502
                     /gene="larE"
                     /locus_tag="VD968_01280"
     CDS             1585..2502
                     /gene="larE"
                     /locus_tag="VD968_01280"
                     /inference="COORDINATES: protein motif:HMM:TIGR00268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent sacrificial sulfur transferase
                     LarE"
                     /protein_id="HYE13054.1"
                     /translation="MKSLAVEEEFASGAGEAPPAEVGAKEQRLRALFREMGSALVAFS
                     GGVDSTYVAHVANEELGARALCVTGVSPSLAASQREEVRALVERLGLRHETIDTEEVG
                     DPSYRRNTSDRCYFCKSELYSKLQPLARERGLAFVVDGSNTDDLGDYRPGREAARERG
                     VRSPLVEAGISKEDVRRLSLRAGLPTWDKPASPCLSSRIAYGTPVTIERLRTVDTGED
                     VMRAFGFREFRVRHHGELVRLEVAPAELDLALRRDVVDELARRFRALGFRYVTLDLHG
                     YRTGSMNEVLNSHQQSTVGDQHKDEKAES"
     gene            2539..3819
                     /locus_tag="VD968_01285"
     CDS             2539..3819
                     /locus_tag="VD968_01285"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HYE13055.1"
                     /translation="MTKAMMDDPRRVKEENPFESMMERFDRAAQLLNLNPDLYAVMRV
                     PNRELKVYIPVRMDSGRIEVFEGYRVQHNFARGPAKGGIRYSPDVTIDEVRALAAWMT
                     WKCAVVNVPFGGGKGGVVCDPAMMSLGELERLTRRYTAELIDFIGPEKDVPAPDMNTN
                     EQTMAWIMDTYSMHARHTVNAVVTGKPVELGGSRGRREATGRGLLFVIQEAIKRFKLA
                     PPSTRVVVQGSGNVGGIGARLLHEAGYKVIAISDMFGGIYNPAGIDIPAALTHLQATR
                     SLQEFPGAEQISNQELLELDCDVLAPCATENQITSENADRIKCRILAEGANGPTTAAA
                     DEILHNKGVFAIPDILANAGGVTVSYFEWVQDRMGYFWKEEVVNERLSDVMVASFNDV
                     VKYADQHHVDTRTAAYMLAIDRVAYDTRMRGIYA"
     gene            4313..6817
                     /locus_tag="VD968_01290"
     CDS             4313..6817
                     /locus_tag="VD968_01290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13056.1"
                     /translation="MRLARRALFAALTTLILMSAVTAQTLRPGNDPRNQAPTVGTGGP
                     PGGPTGLFTIYDGDTLRKGEFTFSIAYSNYDRDPGNVDISVIPLSFNIGLSDHLELFF
                     STEGYRGVNVNNPRHLSSFYLPNSQLFFGATTLGSGAAIILAPIRVSGTQGIQGQVFR
                     PAFVPAQGQFGGQPFVQFPFVGGTGPNFGLTGNAIAPPYTSQLGAAVGGDDGFFGGAA
                     SNFPGMGSVCGSILPGVVLTTRQIPANLTFNTLTVPQVFTTCPTYLPDAPFVNRLYGE
                     STFGVMQAGAKVRFTGPNNPLGVGLVGFYRWYLDKADDASGFNQMQRGAGTGASFGDI
                     GVVGFISGRLSRSVNLSANFGYILNGNPKSDLMGTEDAVLLDRPDELVAGIGMDFPVN
                     RHFQPMFEVKSVHYVGGRTPNSFENNPIDFLGGIRIFPRRWFGFSAWYRHHLNQQGDR
                     VFDFIGGDDDDGFEDIAGFRPSEDPHGFGFQFFIGRRNERLPTIFPNQPPTVTLSASS
                     SRVVLPAECATTEEPCAGCTPTASTVSLSASATDPDGDTLLYTYTTTGGRITGDGPNA
                     TLDLTGVAPGTYTVTVEVDDGCGCIAFNSTTVTVERCTCCPKPPDCPEVDVSCPADPV
                     APGSPITFTATVRGGDPNVTPTFNWTVSAGTISSGQGTSSITVDTTGLPGNSSVTATV
                     DVGGYPRNCPTSDSCTTPIREIRRARKIDEYGNIRFNDEKARLDNFAIELQNDPTSQG
                     YLVCYGGRRGREGEAQRRCDRAKDYLVNTRGIDAGRIVTVDGGFREDLTVELWLVPSG
                     AEPPTASPTVDPSEVQPTRAPARRRGRRRGRDDDEE"
     gene            7128..9524
                     /locus_tag="VD968_01295"
     CDS             7128..9524
                     /locus_tag="VD968_01295"
                     /inference="COORDINATES: protein motif:HMM:NF026220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HYE13057.1"
                     /translation="MKTLSPLLLTLALLLSFAAPRGAAARDDADSAGQRVMNWDVTGP
                     MGGDVRSLVIDPQDPNRLYFGTIDGQIYTSSDGGASWSRLGGFNRPGLLIDNLIVDPE
                     NSRVIYAAAHRHKEPGGFFKTTDGGQTWRESEQLKGEAIHSLTQSSKDPDMLLAGTNR
                     GIFRSENGGDTWEHLDTSSTPGLINVESLAVDPRDSDVIYAGTWYLPYKTTDGGRTWG
                     ITKTGIIDDSDIFAIEIDERNPDHVIMSACSGIYETRNAGAQWRKVNGIPSQSRRTRA
                     ILQNPAKPEIIYAGTTEGFWLSTNGGNDWKVTTNRQSFEVNAIAVHPKNPDVVYIGTN
                     NYGVMVSRDGGRNFAPSNDGYSGRRAYSILPDREQPNRIYATTINTATGGGYFYVSND
                     GGVTWALSARNMPNRLIAYSILQDPEDANVIYLGTNYGLYRSADRGASWAPVTAPKPK
                     PKKAPARRAARRGPAGASAAEAQQEPAAETAVATPAAKPKPNDTVKRAQEALNVAGFE
                     VGKPDGVAGTRTVAALRKFQAAKGVPVSGKLDAPTLVALGLAGGMQEAGAMADALQTA
                     PLYLTDTINALAHTYDAEGRHGMLAATNAGLFRTSDPSKGWERVPYGLNFDARTLCVA
                     TAEQEPDTVFVGTSNSGVLVTRDGGKSWEQARGIPTDAPVNVIERDAKRPERVYVGTT
                     QTLYVSHDGGRRWLRRGGNLPLGSFTSVLINPDNPDEVFVGNAYERGGRVFSTAEGGG
                     VFRSTDAGMNWQRLDPPLPSRRVWALAFDPSDTTKIFVGSHSAGVYVARRGSDSAASQ
                     "
     gene            9936..11912
                     /locus_tag="VD968_01300"
     CDS             9936..11912
                     /locus_tag="VD968_01300"
                     /inference="COORDINATES: protein motif:HMM:TIGR00717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HYE13058.1"
                     /translation="MSTEDNRPTTSGDESTNEQPAQAPAASDTAPAGDAPATTADAPA
                     AASAAAAGAGAQPAAQEQEQVPAAASASDDEDDDDGRGSRGSGGGGDFDFGAMLDQYE
                     QEQAQYQEGSVVRGTVVGVTERSVVIDFGFKSEGAVPVEEFMEGDQLTVKRGDEVEVL
                     IKSMESQEGVPVLSRADAVRMRAWDELEKAYRDGTPVKGRITERVKGGLRVDVDGVAA
                     FLPGSQVDVRPVRNLEALRNQEIEAKVIKLNRKRSNVVLSRKAILDEANDSRKGETLD
                     NLEEGIIVEGQIKNLTDYGAFVDLGGIDGLLHVTDMSWGRLQNPAEMFKVGETVQVKV
                     LKFDRERERVSLGFKQLLPDPWESVEERYPQRMRMEGKIASVTDYGAFIELEPGVEGL
                     VHVSEMTWSKRMKHPSKIVNVGETVNVEVLGVDPKNRRISLGMKQTQPNPWETLPERF
                     HIGDRVRGRVRNLTDFGAFVEVEDGVDGLVHVSDISWNKRIKHPGEVLKKGQEIEAVI
                     TNIDVENRRLSLSIKDTEPSAWDKFINEHQPGDIVRGRVTRFANFGAFVELAEGLEGL
                     CHVSELSDERVEKPEDAAQIGQEMDFRILRIEPESKKIGLSARAAKHDEPVADVKSYT
                     TDAGGGMASLGELADFFNKRSGGGGGSEGEGDNR"
     gene            12161..12427
                     /locus_tag="VD968_01305"
                     /pseudo
     CDS             12161..12427
                     /locus_tag="VD968_01305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900354.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
     gene            12567..13058
                     /locus_tag="VD968_01310"
     CDS             12567..13058
                     /locus_tag="VD968_01310"
                     /inference="COORDINATES: protein motif:HMM:NF023395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HYE13059.1"
                     /translation="MDRLYTPWRYDYIKGASGEKTGHGPDCVLCSIQARGDDEQSFII
                     HRAPRNYVVLNIYPYTTGHLMIVPYEHTADFSGLAKETSDELMDLAKRAQAVLQETYR
                     PHGFNLGINLGRAAGAGVTDHLHLHVLPRWSGDANFMTTVGETRVIPEDLRLTFDKLR
                     GRF"
     gene            complement(13091..13999)
                     /locus_tag="VD968_01315"
     CDS             complement(13091..13999)
                     /locus_tag="VD968_01315"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13060.1"
                     /translation="MKATLLAALMFLSLGAPAALAQDGAWESGIKAGDAAMAGRRYAE
                     AETAYRGAVKAAEKFKSKDPRSAAALIKLAESLSRQAKQAESEETAARALEALDRAVK
                     GSKPKDSEEEFYSTETQVSVLEKAGEVFSAGEKYAEAEPLFKRAVALREEAARVKEKP
                     KSNEDFMKFLAQATTRAQAKLAESYGRLAILYIKQRRHAEAEPLYLKAIAALEAEFGA
                     DAPPVADAVSRLATLYAIQDEFDKAEPLYARAVRAYEASGWLDKPETAAAMENYSLLL
                     RKTGREAEAAAMFERAKAVRAKLPPK"
     gene            complement(14007..16469)
                     /locus_tag="VD968_01320"
     CDS             complement(14007..16469)
                     /locus_tag="VD968_01320"
                     /inference="COORDINATES: protein motif:HMM:NF019317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDIG domain-containing protein"
                     /protein_id="HYE13061.1"
                     /translation="MKRQTRRPRLTSPFTEARKRLTRAVARPLYWLRPTTRFILCFLA
                     LALLSTLLLARTRPALPSAETYQVGDVVTADVVAPADISTEDARATERRREDARAATP
                     PVWRFDPSQTELAVQSFRTAWNGLRQQSELRQSGANSNGAQTNANGGQTERAEPVWPG
                     TGDDRAAIARAVVAHRFDPAALESLTRMMREAGGGYVYHERDSQHVRPEVSVVAARGG
                     EQSVVNTTQTRFVSLSAARESLRGRVSELAGWRPSERELLASAMLPLMRPTVTYEPDM
                     TREARDRAVAAVAPALVVLKRNQTIAREGDTVTEQMLGQFAAMRRYSHTERLPQLFIG
                     VFLFVCALYFGAWRFTEYRSTIAALPLSAARGFALVALSVLAQLALMRVSFAVAESIA
                     ARSTHAPTNDASLWTFAIPFAAAALLVTLLVDTQLALITAVLTAVFAGLLAPNGILTS
                     CFALVSSSAAIYGIGRYRERQSVTKAGLWVGAVNVASAVAVMLASQKPLTLNALLLAA
                     ACGLAGGLLTAIFTAGLMPAGESAFGILTDVRLLELSNADLPVLGQLALRAPGTNQHS
                     HAVGQLAEEACRAIGANPLLARIGALYHDIGKLGAPDHFVENQRGHNPHDRLRPRQSA
                     RIITSHVTYGLKLAREIGLPRQIADFIPQHHGTRTLHYFLRKAQAEATEGEAVNEDEF
                     RYPGPKPQFKEAAVMMLADSCEAAARSLARPDPDNIRTIVNKIFDAIVSDGQLDECDL
                     SLRELTRVRESITASLTAIYHARIDYPGFNPPSPDPSQAPLPLPEIDSEERGVSYSRP
                     AEVPISKGGEVEDEAIAGKHKR"
     gene            complement(16494..>17715)
                     /gene="hflX"
                     /locus_tag="VD968_01325"
     CDS             complement(16494..>17715)
                     /gene="hflX"
                     /locus_tag="VD968_01325"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HYE13062.1"
                     /translation="NSLEEEMARNRRAGRRASARDRAILVGVPTGPMSEAEESMAELR
                     ELAASAGIVVLAEIIQRRASLDPRTVLGKGKLDELLVRALRLGADLIVFDRELSPAQV
                     RAISEATDLKVIDRAQLILDIFAQRAQTSEGKIQVELAQLRYMLPRLIAGHDSAFSRL
                     AGGIGGRGPGETKLETDRRRVRDRINRLEKEIERQRMRRQERRKGRARRELPVISIVG
                     YTNAGKSTLLNTLTSSEVLAEQRMFATLDPTSRRLRLPREQEVIVNDTVGFIRDLPPD
                     LIAAFRATLEEISDSDLLIHLVDASNPRWQQQIESVERILSDLGHTDIPRLVVFNKSD
                     LVAPEDMEAIMRQASQAGARESFAVSALDAGSLRPVLERAGEILARDLTSQGRRAART
                     GGDGAEHEAEAVAR"
BASE COUNT         3001 a         6022 c         5946 g         2746 t
ORIGIN      
        1 ggcgagcgcc tcctcgaact cgccgaggcg gtcgtgcgcc gtccccgtga ggaagtggac
       61 gattgcaagc tcgggcctcg cgcgctctat ccatttgtat tcgacaatcg cctgcttgta
      121 aagcttcagt tcgtagaggg ccgcggcgaa gttcgcatgc gcctcgtagt gctcgggcgc
      181 ggccttgagg acttgctgta ggatgccggc cgcctcagtg aacctgcgga gctgtatgag
      241 ggctgcggcg tagcccgtgg cgtagtcggc gtcgtcaggc ttaaggcgtg cggcgcgccc
      301 gtaatattcg agcgagcgct cgggcgccga cgtgcggtag agcttgccga ggcaggcgag
      361 cgccgaggcg ttcttcgggt cgcgcgcgac gagcttttcg agcgactcgc gcgcctcctg
      421 cgtgtcttcg cagcggacac gcagagcgtc gccgagcctc cggcccgcgt cgctcgcctt
      481 cgcctcttcg ggaagagact cataaacgcg ctgcgcgtcc tccgcccgcc ccgccatgcc
      541 gtagaggttc gcgagagaaa tgaggagcga ggcgtcggac ttcgcggccg cttcgagcga
      601 cttcagctcc tcggacgcgc gcgccgcatc gcccgactcg atgagcaatt ccgcgcgcac
      661 catgcgcgcg gccgtgttcg agggctcgat ggcgagcgcg cgctcgaagc tcttaacggc
      721 agcgctgtta tccttcgcct cgcgctcggc ggcgccgcgc gcgagccaga gcgctgcgtc
      781 tccggggctc gcgtcggtcg cgcgacgaag aagcgcgagc gcctcggcct tgtcgccggc
      841 gcgcgcccga aactcggcga gcgccgagag cgcgtgcgtg ctcttcgcgt caatttctag
      901 cacgcgcctg agcagcgcct cggcgtcggc cgcgcgcccc ggctcgcgcg cgagcgcgag
      961 gccgagcgtc aggggcggca gcgcccacgc gggcctgagc tgcatcgcgc ggcggaaggc
     1021 ggcctcggct tcaggcaggc gcttgagcgc gacgagcgcc acccccctct ggtgctcggc
     1081 ctccgggaac tcgggccgga gcttcagagc ctcctcgtag aactcgagcg ccagctcgta
     1141 ctccttgcgc gcgtgcgcgt cctgcccctg gttgaagagc ttgacggggt ctgcggccgc
     1201 ctcgccgaac tcgtcgcgct cctgcgcgag cgaagacggc gcgcacgcga agacgagcgc
     1261 gaagagcgcg gctgccgcaa gcggtcggaa tgaaggaagc atttaaaaca ggcgcaaagc
     1321 ttaaaggtct cgaagctcgc tcacggaggg agaccggcgt gagtttcgcg ccgcaatata
     1381 acacgcgcgg cgcgcggcgc gcacgcgatg ctggatgcgc tcgcggcggg tgcgggttgc
     1441 gcgcgcatct tgcatgcgat aacattcgcg cccgtaagac ctaataacaa ctccaacgcc
     1501 gcagaggttt ccacgacgcc ggggagtcgc ccgcccgcaa gcgcacgaac gcgcgcggcc
     1561 actcgcccgg acggaagggg agaagtgaag agtctggccg tcgaagaaga gttcgcgagc
     1621 ggcgcgggcg aggcgccgcc cgccgaagtc ggggcgaagg agcagaggct tcgcgccctc
     1681 ttccgcgaga tgggctcggc gctcgtggcc ttctcaggcg gcgttgacag cacctacgtc
     1741 gcgcacgtcg cgaacgaaga gttgggcgcc cgcgcactct gcgtcacggg cgtctcgccc
     1801 agcctcgcgg cgagccagcg cgaagaggtt cgcgcgctcg ttgagcgcct cggcctccgc
     1861 cacgagacga ttgacaccga agaggtgggc gacccctcgt accgccgcaa cacgtcagac
     1921 cgctgctact tctgcaagtc ggagctttac tcgaaactac agcctcttgc gcgcgagcgt
     1981 ggcctcgcct tcgtcgtgga cggctcgaac acggacgacc tcggcgacta caggccgggc
     2041 cgcgaggcgg cgcgcgagcg cggcgtgcga agccccctcg tcgaggccgg catctcgaaa
     2101 gaggacgtgc ggcgcctgag ccttcgcgcg gggctcccca catgggacaa gcccgcgagc
     2161 ccctgcctct cttcgcgcat agcctacggc acgcccgtca cgatagagcg gctgcgtacc
     2221 gttgacaccg gcgaagacgt gatgcgcgct ttcggcttcc gcgagttccg cgtgcgtcac
     2281 cacggggaac tggtgcggct cgaagtcgcg ccagcggagt tagacctcgc gctgcgccgc
     2341 gacgttgttg acgaactggc gcgccgcttc cgcgcgctcg gcttccgtta cgtcacccta
     2401 gaccttcacg gctaccgcac cggctcgatg aacgaagtct taaacagcca tcagcaatca
     2461 acggtcggcg atcagcataa agacgagaaa gctgaaagct gactcctgac tgctgacagc
     2521 ttcttttcgg agacgattat gacaaaggcg atgatggacg acccgcggcg cgtaaaggag
     2581 gagaacccct tcgagtccat gatggagcgc tttgaccgcg ccgcgcagct cctgaacctc
     2641 aaccctgacc tctacgccgt gatgcgcgtg ccgaacaggg aactgaaggt ttacatccca
     2701 gtccgaatgg actcgggccg catagaggtc ttcgagggct accgtgtgca gcacaacttc
     2761 gcgcgcggcc ccgccaaggg cggcatacgc tactcgcccg acgtgacgat tgacgaggtg
     2821 agggcgctgg cggcgtggat gacctggaag tgcgccgtcg tcaacgtccc tttcggcggg
     2881 ggcaaagggg gcgtggtctg cgacccggcg atgatgtctc tgggcgagct ggagcgcctg
     2941 acgcgccgct acaccgccga gctgatagac ttcatcgggc cggagaagga cgtgccagcg
     3001 cccgacatga acaccaacga gcagacgatg gcctggatca tggacaccta ctccatgcac
     3061 gcgcgccaca ccgtcaacgc cgtcgtgacg ggcaagcccg tcgagctggg cggctcgcgc
     3121 ggacggcgcg aggccacggg gcgcggcctg ctcttcgtca tacaggaggc catcaagcgc
     3181 ttcaagctcg cgccgccgag cacgcgcgtc gtcgtgcagg ggtctgggaa cgtcggcggc
     3241 ataggcgcgc gcctcctcca cgaggccggc tacaaggtca tagccatctc cgacatgttc
     3301 ggcggcatat acaacccggc cggcatagac atcccggccg cgctcacgca cttgcaggcg
     3361 acgcgctcgc tacaggagtt ccccggcgcc gagcagattt ccaaccagga gcttctcgag
     3421 ctcgactgcg acgtgctcgc cccgtgcgcc accgagaacc agataacctc cgagaacgcc
     3481 gaccgcatca agtgccgcat actggccgag ggggccaacg ggcctaccac ggccgccgcc
     3541 gacgaaatcc tgcacaacaa aggggttttc gccatccccg acatactggc gaacgcaggg
     3601 ggcgtcaccg tcagctactt cgagtgggtg caggacagga tgggctactt ctggaaggag
     3661 gaggtcgtca acgagcgcct ctccgacgtg atggtcgcca gcttcaacga cgtggtcaaa
     3721 tacgccgacc agcaccacgt tgacacgcgc accgcggcat acatgctggc gatcgaccgc
     3781 gtggcctacg atacgcgcat gcgcggtatc tatgcgtgac aaaaatgtgt caggtttttt
     3841 cgggctaagt tgtgaaaaag tcttgatttc cgcgccgtag tggagtatgg tctggcggaa
     3901 attggtacgc cccggcaccc gtttgtttag ggtcaataga gagcgggagc ggggcgcgcc
     3961 gaccgagtgt tgacagcggc gcacccgttt tgtataagca ggtgcgctaa acctaagcaa
     4021 acagaaattc agttgagagg cgtcgtagag gcagtgcaag agtgcccgca gaacgcccct
     4081 cggtaaaggc gttcgaggct cctctcgctg ctccgctcca cctgcaagcg ttcggacgtt
     4141 ctgagggcgg tagcagtttc tttgaccagg gtttgtacgc ttgtagttgg agcgcccgcg
     4201 ccccagacag atgagttacc gggcccgaac tttcaagagc cccgcggtga ctccggggag
     4261 cacggtcgtc cccttccgca aaaatttaaa ctcatttcgc aggaggaatg cgatgagact
     4321 cgcgagaaga gcgctatttg ccgcgctcac caccttaatc ctgatgtcgg cagtcactgc
     4381 ccagacgctg aggccgggca acgacccgcg caaccaggcg cccactgtcg gcacgggagg
     4441 ccctccggga ggcccgaccg ggctcttcac catctacgac ggcgatacgc tgcgtaaggg
     4501 tgagttcacc ttcagcattg cctacagcaa ctatgaccgc gaccctggca acgttgacat
     4561 ctccgtcatc ccgctcagct tcaacatcgg gttgagcgac cacctcgagc tgttcttcag
     4621 caccgaaggg tatcgcggcg tcaacgtcaa caacccgcgc cacctgtcca gcttctacct
     4681 gccgaactcg cagctcttct tcggggccac cacgctcggt agcggcgcgg ccatcatcct
     4741 tgctcctatc agggtcagcg ggactcaggg catccagggg caggtcttcc ggccggcctt
     4801 cgtgccggcg caggggcagt tcggcggcca gccgttcgtg cagttcccgt tcgtcggcgg
     4861 cacgggcccg aacttcggcc tgacgggcaa cgccatcgcc ccgccctaca cgagccagct
     4921 cggcgcggcc gtgggcggcg acgacggctt cttcggcggc gcggcctcta acttccccgg
     4981 catgggctct gtctgcggca gcatcctgcc cggcgtcgtg cttacgacca ggcagatacc
     5041 ggccaacctg accttcaaca cactgacggt gccgcaggtg ttcaccacct gcccgaccta
     5101 cctgcccgac gccccgttcg tcaaccgcct ctacggcgag tccacgttcg gcgtcatgca
     5161 ggcgggcgcg aaggttcgct tcacgggccc gaacaacccg ctcggcgtcg gcctcgtggg
     5221 cttctaccgc tggtacttgg ataaggccga cgacgcctcc ggcttcaacc agatgcagcg
     5281 cggggccggc acgggcgcca gcttcggcga catcggggtg gtgggcttca tctcgggccg
     5341 cctgagccgc tcggtcaacc tttcggccaa cttcggctac atcctgaacg gcaatccgaa
     5401 gtccgacctg atgggcaccg aggacgccgt cctgctcgac cggcccgacg agctggtggc
     5461 cggcatcggc atggacttcc ccgtcaaccg ccacttccag ccgatgttcg aggtgaagtc
     5521 ggttcactac gtgggcgggc gcacgccgaa ctccttcgag aacaacccga ttgacttcct
     5581 cggcggcata cgcatcttcc cgcgccgctg gttcggcttc agcgcgtggt atcgccacca
     5641 cctgaaccag cagggcgacc gcgtcttcga cttcatcggg ggcgacgacg acgacggctt
     5701 cgaggacatc gccggcttca ggccgtcgga ggacccgcac ggcttcgggt tccagttctt
     5761 catcggccgc cgcaacgagc ggctcccgac catcttcccg aaccagccgc cgaccgtcac
     5821 gctctcggcc tcttcgagcc gcgtggtgct ccccgcggag tgtgccacga ccgaagagcc
     5881 ttgcgcgggc tgcacgccga ccgcatcgac cgtaagtctc tctgcctcgg cgactgaccc
     5941 ggacggcgac acactgctct acacctacac gaccaccggc ggccgcatca cgggcgacgg
     6001 cccgaacgcc acgctcgacc tgacgggtgt ggcgcccggc acctacaccg tgacggtcga
     6061 ggttgacgac ggctgcggct gcatcgcctt caactcgacg accgtgacgg tcgagcgctg
     6121 cacctgctgc ccgaagccgc cggactgtcc agaggttgac gtgagctgcc cggccgaccc
     6181 ggtcgctccc ggctcgccga taacgttcac tgccactgtg aggggcggcg acccgaacgt
     6241 tacgccgacc ttcaactgga cggtctcggc cggcacgatc agcagcggcc agggtacgag
     6301 ctcgatcacg gttgacacga cgggcctgcc cggcaactcg tcggtcacgg cgaccgtgga
     6361 cgtgggcggc tacccgcgca actgcccgac ctcggatagc tgcacgactc cgatccgcga
     6421 aatccgcagg gctcgcaaga tcgacgagta cggcaacatc cggttcaacg acgagaaggc
     6481 gcgtctcgac aacttcgcaa tcgagttgca gaacgacccg acttctcagg gctacctggt
     6541 gtgctacggc ggccgccgcg gccgcgaggg cgaggcgcag cgccgctgcg accgcgccaa
     6601 ggactacctc gtcaacacgc gcggcattga cgccgggcgc atagtgaccg tggacggcgg
     6661 cttccgcgaa gacctgacgg tcgagctctg gctcgtcccg tccggcgcgg agcccccgac
     6721 ggccagcccg accgttgacc cgagcgaggt gcagcccaca cgggctcccg cgcgccgtcg
     6781 cggccgccgt cgcggccggg acgacgacga ggagtaaacc ctaaaaccac tacggcgggc
     6841 cgcgcttcgc ggcacggccc gccgtactaa agacgcgggc ggcgctctcc gaaagggaat
     6901 cgccgcccgc tccgctttcc cccgacgccc gaaatccctt taaaatacaa ctggcttcgg
     6961 aggctgcggc atcaaaacgc ggtcgaaaac tgggcgccgg agcgcgcgag ggcgggctcg
     7021 ggggcgcgaa aatgtgatat agatattggc ccgtgcggcg cgctcgccgg ccgcaggtct
     7081 taaaactccc gacagctcaa gtggtgttgc cgatgacgaa tccttttatg aagacactgt
     7141 cccccctgct tttaaccctg gcgctgctgc tctctttcgc cgccccgcgc ggggcggcgg
     7201 cccgcgacga cgccgactct gccggccagc gcgtcatgaa ctgggacgtg acgggcccga
     7261 tgggcggcga tgtgcgctcg ctcgtcatag acccgcaaga ccccaaccgc ctctacttcg
     7321 gcactattga cgggcagatc tacacctcgt ctgacggtgg cgcgagctgg tcgcgcctcg
     7381 gcggcttcaa ccgccccggc ctcctcatag acaacctaat cgttgacccg gagaactccc
     7441 gggtcatcta cgctgccgcg caccgccaca aggagccggg cggcttcttc aagacgaccg
     7501 acggcggtca gacgtggcgc gagtccgagc agctcaaggg cgaggccatc cactccctga
     7561 cgcagtcctc gaaagacccg gacatgctgc tggccggcac caaccgcggc atcttccgct
     7621 ccgagaacgg cggcgacacg tgggagcacc tcgacacttc ctcgacgccg ggcctcatca
     7681 acgtcgagtc gctcgccgtt gacccgcgcg actccgacgt gatttacgcc ggcacgtggt
     7741 atctgccgta caagaccacc gacggcggcc gcacgtgggg catcaccaag accggcatca
     7801 ttgacgactc agacatcttc gccatagaga ttgacgagcg gaaccccgac cacgtcatca
     7861 tgtcggcgtg cagcggcatc tacgagacgc gcaacgccgg cgctcaatgg cgcaaggtca
     7921 acggcatccc gtcgcagtcg cgccgcacgc gcgccatact ccagaaccct gcgaagccgg
     7981 agataatcta cgccggcacg accgagggct tctggctctc gacgaacggc ggtaacgact
     8041 ggaaggtgac cacgaaccgc cagagcttcg aggtcaacgc catcgccgtc cacccgaaga
     8101 acccggacgt ggtttacatc ggcacgaaca actacggcgt gatggtctcg cgcgacggcg
     8161 ggcgcaactt cgcgccgtcg aacgacggct actcgggccg ccgcgcctac tcgatactgc
     8221 ccgaccgcga gcagcccaac cgcatctacg cgaccacgat aaacaccgcg accggcggcg
     8281 gctacttcta cgtcagtaac gacggcggcg tgacctgggc cctctcggcg cgcaacatgc
     8341 cgaaccgcct cattgcctac tccatcctcc aagacccgga ggacgccaac gtcatttatc
     8401 tgggcacgaa ctacggcctg taccgctcgg ccgaccgcgg cgcgagctgg gcgcccgtga
     8461 cggcgccgaa gcccaagccc aagaaggcgc cggcgcgccg cgcggctcgg cgcggccccg
     8521 cgggggcttc ggcggcggag gcgcagcagg agcccgcggc tgagacggcc gtagccacgc
     8581 ccgcggccaa gcccaagcct aacgacacgg tcaagcgcgc gcaggaggct ttgaacgtcg
     8641 ccggcttcga ggtcgggaag ccggacggcg tcgccggcac gcgcaccgtg gcggcgctca
     8701 ggaagttcca ggccgcgaag ggcgtccccg tctcgggcaa gctcgatgcg cctacgctcg
     8761 tcgcgctcgg cctcgcgggc ggcatgcagg aggcgggcgc gatggccgac gctttacaga
     8821 cggcgccgct ctacctgacc gacacgataa acgcgctggc ccacacctac gacgccgagg
     8881 ggcgccacgg catgctcgcc gcgaccaacg ccggcctgtt ccgcacctcc gacccgtcga
     8941 agggctggga gcgcgtcccc tacgggctga acttcgacgc gcgcacgctc tgcgtcgcga
     9001 ccgccgagca ggagcccgac accgtcttcg tcggcacctc caactcgggc gtgctcgtca
     9061 cgcgcgacgg cggcaagagc tgggagcagg cgcgcggcat ccctacggac gcgcccgtca
     9121 acgtcatcga gcgcgacgcc aagcgccccg agcgcgttta cgtcggcacg acgcagacgc
     9181 tctacgtctc gcacgacggc ggccggcgct ggctgcgccg cggcgggaac ctgccgctgg
     9241 gcagcttcac gagcgtgctg attaaccctg acaacccgga cgaggtcttc gtcggcaacg
     9301 cctacgagcg gggcgggcgc gtctttagca cggccgaagg cggcggcgtc ttccgctcga
     9361 cagacgccgg catgaactgg cagcggctcg acccgccgct cccgagccgc cgcgtctggg
     9421 cgctcgcctt cgaccccagc gacacgacga aaatcttcgt gggctcccac tcggccggcg
     9481 tctatgtcgc gcgccgcggc tcggactccg ccgcgagcca gtaaagaaaa ggggctgggg
     9541 ttctggagac tagaggctgg taaaacactt tctaactagc ctctagctcc agaccctggc
     9601 ccctttccac gttccagcct tgacacaccg tctccggcct gtgtaaattg ccttcctacc
     9661 tggcagaata gccggtgatt ggcgggtcac gcgggtgatc cacgggcacg aggaagaact
     9721 gttttcggtc gcctcttaac ctacgggcct tcttgagagg cccggcatcc cccgcctcaa
     9781 atcctccgtt ttcgtcaatc acccaaagct actctcacca gcagacgtca acgcccgtta
     9841 gcgccgacag ccggtcgtcg agacccttcg cgccgagcgt tgaacgtttg ctgccgggcg
     9901 gcggaatcaa accagcagga gccctacagg agttcatgtc caccgaagat aacaggccga
     9961 cgactagcgg cgacgaaagc accaacgaac aaccggcgca agccccggcg gcgagcgaca
    10021 cagcgcccgc gggcgacgcc ccggccacga ccgccgacgc gccggccgcg gcaagcgccg
    10081 cggctgcggg cgcgggcgct caacccgcgg cgcaggagca ggagcaggtc ccggcggcgg
    10141 cttcggcctc cgacgacgaa gacgacgatg acgggcgcgg ctcacgcggt agcggcggcg
    10201 gcggcgactt cgacttcggc gccatgctcg accagtacga gcaggagcag gcgcagtacc
    10261 aggaaggctc cgtagtgcgc ggcacggtcg ttggcgtcac cgagcgctca gtcgtcatag
    10321 acttcggctt caagtccgag ggcgccgtcc ccgtcgagga gttcatggag ggcgaccaac
    10381 tcaccgtcaa gcgcggcgac gaggtcgagg tgctcatcaa gagcatggag tcgcaggagg
    10441 gcgtccccgt gctctcgcgc gccgacgccg tgcgcatgcg cgcctgggac gagctcgaga
    10501 aggcttaccg cgacggcacg cccgtcaagg ggcgcatcac cgagcgcgtc aagggcggcc
    10561 tgagagttga cgttgacggc gtcgccgcct tcctcccggg ctcgcaggtg gacgtgcggc
    10621 ccgtgcgcaa tctcgaggcc ctgcgcaacc aggagatcga ggcgaaggtc attaagctca
    10681 accgcaagcg ctcgaacgtc gtgctctctc gcaaagcgat actcgacgag gcgaacgact
    10741 cgcgcaaggg cgagacgctc gacaacctcg aagagggcat cattgtcgag ggccagataa
    10801 agaacctgac ggactacggc gccttcgttg acctcggcgg aattgacggc ctcctgcacg
    10861 tgaccgacat gtcgtggggg cgcctccaga acccggccga gatgttcaag gtcggcgaga
    10921 ccgtgcaggt caaggtcttg aagttcgacc gcgagcgcga gcgcgtctcg ctcggcttca
    10981 agcagctcct gcccgacccg tgggagtcgg tcgaggagcg ctacccgcag cgcatgcgca
    11041 tggagggcaa gatcgcctcc gtcacagact acggcgcctt catcgagctc gagccgggcg
    11101 tcgagggtct cgtccacgtc tccgagatga catggtcgaa gcgcatgaag cacccctcga
    11161 agatcgtcaa cgtcggcgag acggtcaacg tcgaagtcct gggcgttgac ccgaagaacc
    11221 ggcgcataag cctcggcatg aagcagacgc agccgaaccc gtgggagacc ctgcccgagc
    11281 gcttccacat cggcgaccgc gtgcgcggcc gcgtccgcaa cctgaccgac ttcggcgcct
    11341 tcgtcgaggt cgaggacggc gtggacggcc tagttcacgt ctccgacatc tcctggaaca
    11401 agcgcatcaa gcaccccggc gaggttctga agaaggggca ggagatagag gcggtcatca
    11461 cgaacataga cgttgagaac cgccgcctct cgctctcgat aaaggacacg gagccgagcg
    11521 cctgggacaa gttcataaac gagcaccagc cgggcgacat cgtgcggggc cgggtgacgc
    11581 gcttcgccaa cttcggcgcc ttcgtcgagc tggccgaggg gctcgaaggc ttgtgccacg
    11641 tctcggagct ttccgacgag cgcgtcgaga agccggagga cgcagcgcag atagggcagg
    11701 agatggactt ccgcatcctg cgcatcgagc cggagtcgaa gaagatcggg ctctcggcgc
    11761 gcgccgccaa gcacgacgag ccggtcgctg acgtgaagag ctacacgacc gacgccggcg
    11821 gcggcatggc ctctctgggc gagctcgccg acttcttcaa caagcgctcc ggcggcggtg
    11881 gcggctccga gggggaaggc gacaaccgct agtcgggact gttcggcaaa taaaagcccc
    11941 gcgttgagtc tcgcgattca gcgcggggct ttcttcgtca ggggcgcgcc cccgcctgag
    12001 gccggctaaa tcgttggctg cacggacgtt ttgcccttga tacgcgctcg cggtttctgc
    12061 taagttactg cccggcccgc aaagcccccg tacacgtttg cccgcaccgg agtttcggcg
    12121 caaccctttc gaggaaagcc tctaacaggt ggtcaacacg atgacgaaag cagaactggt
    12181 cgaggacgtg gcgcgcgccg ccgagctgac gaagaaggac gccgagcgcc tcgtcgagat
    12241 cgtcttcgag agcatcatcg agacgctaaa ccacggcgag aagatagagc tgcgcggctt
    12301 cggcagtttc cgcgtgcgcg agcgcggcgc gcgccgcggc cgcaacccga agaccggcgc
    12361 gcccgttgac atcccggcca agcgcgtccc ctacttcaag cccggcaagg agttgaagga
    12421 gcttattaac gaagagccgg gcggcccttc agaagagcct gcgcccgcgg gcttcggtgc
    12481 ggccggggac gaggaggccg gcggcgggca gacgccgccg ctgatgtagc cggcgcgacg
    12541 ccgcgagtac aagggggagg cgaaggttgg acaggctcta cacaccgtgg cgttacgact
    12601 acatcaaggg ggcgagcggc gagaagaccg gccacgggcc tgactgcgtc ctatgctcca
    12661 tacaggcgcg cggcgacgac gagcagtcct tcataatcca ccgcgcgccc cgcaactacg
    12721 tcgtcctcaa catctacccc tacacgaccg gccacctgat gatcgtccct tacgagcaca
    12781 cggccgactt ctcgggcctg gctaaagaga cttcagacga gctgatggac ttggcgaagc
    12841 gcgcgcaggc cgtgctgcaa gagacttacc gccctcacgg cttcaacctc ggcatcaacc
    12901 tcggccgcgc ggccggcgcg ggcgtcacgg atcacctgca cctgcacgtg ctgccgcgct
    12961 ggtcgggcga tgccaacttc atgacgaccg tcggcgagac gcgcgtcatc cccgaagacc
    13021 tccgcctgac cttcgacaaa ctccgcggcc gcttctgaaa gcctgaactt tttcgcaacg
    13081 tgagggcctg ctacttgggc gggagcttcg cccggacggc cttagcccgc tcgaacatgg
    13141 cggccgcctc ggcctctcgc cccgtcttcc tgagcagcag cgagtagttc tccatcgccg
    13201 ccgccgtctc cggcttgtcg agccagcccg aagcctcgta ggcgcggacg gcgcgggcgt
    13261 agagcggctc ggctttgtcg aattcgtcct gtatggcgta gagggtcgcc agccggctca
    13321 cggcgtcggc gacgggcggc gcgtcggcgc cgaactcggc ttcgagggcc gcgatggcct
    13381 tcaggtagag cggctcggcc tcggcgtgcc tcctctgttt gatgtacagg atagccagcc
    13441 tgccgtatga ctcggcgagc ttggcctgag cgcgcgtggt cgcctgcgcg aggaacttca
    13501 tgaagtcctc gttgctcttc ggcttctcct tcacccgcgc ggcctcttcg cgcagcgcga
    13561 cggcgcgctt gaagagcggc tctgcctccg cgtacttctc accggccgag aagacctcgc
    13621 cggccttctc cagcacgctc acctgcgtct cggtgctgta gaactcctcc tcggagtctt
    13681 tcggcttcga gcccttgacg gccctgtcga gcgcctcgag cgcgcgggcg gccgtctctt
    13741 ccgactcggc ctgcttggcc tgacggctca gcgactccgc gagcttaatg agcgccgcgg
    13801 ccgagcgcgg gtctttcgac ttaaacttct cggcggcctt gacggccccg cggtaggcag
    13861 tctcggcctc ggcgtagcgc cgcccggcca tcgccgcgtc gcccgccttt atgcccgact
    13921 cccacgcgcc gtcctgagcc aaagcggcgg gggcgcccag ggacaaaaac atgagagcgg
    13981 cgagcagcgt tgctttcatc atcgccttac ctcttgtgct taccggcgat agcctcatcc
    14041 tcaacctcgc cgcccttact gatcggcact tcggccgggc ggctgtagga gacgccgcgc
    14101 tcctcgctgt ctatctcggg cagcgggagc ggtgcctgcg acgggtcggg cgagggcggg
    14161 ttgaagccgg ggtagtctat gcgcgcgtgg tagatggccg taagcgacgc ggttatggac
    14221 tcgcgcacgc gcgtcagctc gcgcagagag aggtcgcact cgtcgagctg cccgtcgctc
    14281 acgatggcgt cgaagatttt gttgacgatg gtgcgaatgt tatcggggtc ggggcgagcg
    14341 agcgagcgcg cggccgcctc gcaagagtcg gcgagcatca tcacggccgc ctccttgaac
    14401 tggggcttcg ggccggggta gcggaactcg tcctcgttga cggcctcgcc ctcggtcgcc
    14461 tcggcctgcg ccttccgcag gaagtagtgg agcgtgcgcg tgccgtggtg ctgcggtatg
    14521 aagtcggcta tctgcctcgg cagccctatc tcgcgcgcga gcttcaggcc gtaagtcacg
    14581 tgcgacgtga tgatgcgcgc gctctggcgc gggcgcaggc ggtcgtgtgg gttgtggccc
    14641 ctctggttct cgacgaagtg gtcgggcgcg ccgagctttc cgatgtcgtg gtagagcgcg
    14701 cctatgcgcg cgagcaaggg gttggccccg atggcgcggc aagcctcctc ggcgagctgg
    14761 ccgacggcgt gagagtgctg gttcgtccca ggcgcgcgca gggcgagctg gccgagcacg
    14821 ggcaggtctg cgttagagag ttcgagcagc cgcacgtcag tcagaatgcc gaaggccgac
    14881 tcgcccgccg gcatcagccc cgccgtgaat atcgccgtga gcagcccgcc ggccagcccg
    14941 cacgccgcgg cgagcagtag ggcgttcagg gtcaggggct tctgcgaggc gagcatgacg
    15001 gcgacggccg aggcgacgtt gacggccccg acccacaggc ccgccttcgt caccgactgg
    15061 cgctcgcggt agcgcccgat gccgtagatc gcggccgacg aggagacgag cgcgaagcac
    15121 gaggtcagaa tcccgttcgg cgcgagcagc ccggcgaaga cggccgtgag caccgccgtt
    15181 atgagcgcca actgcgtgtc aacgaggagc gtgaccagga gcgcggctgc ggcgaagggg
    15241 atcgcgaacg tccagaggct cgcatcgttc gtcggcgcgt gcgtggagcg ggcggctata
    15301 ctttcggcca cggcgaagct gacgcgcatg agggcgagct gcgcgagcac cgagagcgcg
    15361 acgagcgcga agccgcgcgc cgccgagagc ggcagcgccg cgatggtgct ccggtactcc
    15421 gtgaagcgcc acgcgccgaa gtagagtgcg cagacgaaga ggaagacgcc gataaagagc
    15481 tgcggcagcc gctcagtgtg gctgtagcgg cgcatggcgg cgaactgccc gagcatctgc
    15541 tccgtcacgg tgtcgccctc gcgcgcaatc gtctggttgc gcttgaggac gacgagcgcc
    15601 ggggcgacgg cggcgacggc gcggtctcgc gcctcgcgcg tcatgtcggg ctcgtaggtg
    15661 acggtcggcc gcatcagcgg gagcatggcc gacgccagaa gctcgcgctc cgaggggcgc
    15721 cagcccgcga gctccgagac gcggccgcgc aaactctcgc gcgccgccga gagcgagacg
    15781 aagcgcgtct gcgtagtgtt gaccacggac tgctcgcctc cgcgcgccgc gacgacgctg
    15841 acttcggggc ggacgtgctg agagtcgcgc tcgtgataga cgtagccgcc gccggcctcg
    15901 cgcatcatgc gggtcaggct ttcgagcgcg gccgggtcga agcggtgcgc gacgacggcg
    15961 cgcgcgatgg cggcgcggtc gtcgcccgtg ccgggccaga cgggctcggc ccgctcggtt
    16021 tgtccgccgt tcgcgttcgt ctgcgcgccg ttgctgttgg cgcccgactg cctaagctcg
    16081 gactgctggc gcagcccgtt ccaggcggtg cggaagctct gcacggccag ctcggtctgc
    16141 gaggggtcga agcgccagac gggcggggtc gcggcgcgcg catcctcgcg ccgccgctcg
    16201 gtcgcgcgcg cgtcctcagt cgagatgtcg gcgggcgcga ctacgtcggc cgtcacaacg
    16261 tctccgacct ggtaagtctc ggccgagggg agcgcggggc gcgtgcgcgc gagcaggagc
    16321 gtgctgagga gcgcgagcgc gaggaagcag agtatgaagc gcgtcgtcgg gcggagccag
    16381 tagaggggcc gcgcgacggc gcgcgtaagg cgtttgcgcg cttcggtgaa ggggctcgtt
    16441 aagcgggggc gtcgtgtctg tctcttcatc gttgatgagg gccgtcgcgc ccttcagcgc
    16501 gcgacggcct cggcctcgtg ctccgcgccg tcgccgcccg tgcgggccgc gcgcctgccc
    16561 tgggaagtca ggtcccgcgc gagaatctcg ccggcccgtt cgagcaccgg ccggagcgag
    16621 cccgcgtcaa gcgcggagac ggcgaagctc tctctcgccc cggcctgcga cgcctgccgc
    16681 attatcgcct ccatgtcctc gggggcgacg aggtcggact tgttgaagac gacgaggcgg
    16741 ggaatgtctg tgtggccgag gtcggagaga atcctctcga cagactcgat ctgctgctgc
    16801 cagcgcgggt tcgaggcgtc aacgaggtgg atgagaaggt cgctgtccga aatctcttcg
    16861 agcgtggcgc ggaaggccgc gatgaggtcg ggcggcaggt cgcgtatgaa gccgaccgtg
    16921 tcgttgacta tcacctcctg ctcgcgcggc aggcgaagtc ggcgcgaggt cgggtcaaga
    16981 gtcgcgaaca tgcgctgctc ggcgagcacc tcgctcgaag tcagcgtgtt gaggagcgtt
    17041 gacttgcccg cgttcgtgta gccgacgatg gagatgacgg gaagctcgcg ccgcgcgcga
    17101 ccctttcgcc gctcctgacg gcgcatgcgc tgccgctcga tctccttttc gagacggttg
    17161 atgcggtcgc gcacgcggcg gcggtcggtc tcgagcttcg tctcgccggg gccgcgcccc
    17221 ccgatgccgc ccgccagtcg agagaaggcc gagtcgtggc cggcaatcag gcgcggcagc
    17281 atgtatcgga gctgcgcgag ctccacctga atcttgccct cgctcgtctg cgcgcgctgc
    17341 gcgaatatgt cgagtatgag ctgcgcgcgg tctatgactt tcaggtcggt cgcctcggag
    17401 atggcgcgaa cctgcgcggg gcttagctcc cggtcgaaga cgatgaggtc tgcgccgagg
    17461 cggagggcgc gcaccagaag ctcgtcgagc ttgcccttgc cgagcacggt gcgcgggtcg
    17521 aggctcgcgc gccgctggat tatctcggca aggacgacga tgccggccga ggcggcaagc
    17581 tcgcgaagct cggccataga ctcttcggcc tcggacatcg ggcccgtagg gacgccgacg
    17641 aggatggcgc ggtcgcgcgc cgaggcgcgg cggccggcgc ggcggttgcg cgccatctcc
    17701 tcttcgagag agttg
//
LOCUS       DASPKR010000045         2341 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1429365, whole genome shotgun sequence.
ACCESSION   DASPKR010000045 DASPKR010000000
VERSION     DASPKR010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2341)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1429365"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1368)
                     /locus_tag="VD968_01330"
     CDS             complement(<1..1368)
                     /locus_tag="VD968_01330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13063.1"
                     /translation="MWKLDTESGRAEQVRITRRGSPAGPAVERLRVNDQFQELALSPD
                     GKKVAFVTRGEVFAASASDGGDATRVTTTSGIESQPAWAPDSRRLAYVSERNGSGQIF
                     LYDFATNTETQLTAGSHGDATPRFSPDGKWLAFERGGRELRALNMETKQERLVATSDL
                     ERPPLNSDRPFVWSPDSRWIAYMPVGAKLFRNVFVAPVEGEGKPQPVSFLANAGSNTV
                     SWSPDGTFILFDTGQRTEAGQLARVDLVPRTPRFREDQFRDLFKEETPKSVSPTLRKQ
                     ENQPQSPVPPREAPPSAPTPSPTPSPTPSTSPTPSPSPTPEAQKADAAKKQTEIVLEG
                     IRRRLSLLPVGVDVLYQTISPDGKWALMIAGAVGQTNLYVYPLDELAREPAVARQLTS
                     TPGFKSFAHFSPDSREVFYLENRRIQVAPLDPRTPARTLAVTAEMDVDFAREKLEVFE
                     QGWEYM"
     gene            complement(1420..2241)
                     /locus_tag="VD968_01335"
     CDS             complement(1420..2241)
                     /locus_tag="VD968_01335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13064.1"
                     /translation="MALRKMWACALAAAIMWQGAAAPRAQGGAGQRTEARAYFYEPAV
                     SPDRSEIAFVSGGDIWTVPSAGGEARLLVSHPATEYRPLYSPDGRRLAFTSARTGNGD
                     LYVLDFESGDTRRLTFDDGFDQLDAWSPDGRWLYFSSTSRDISASNDIFRVAADGGTP
                     MPVSADRYANESGAAPSPDGADLAFVGRGYLHWWRRGHSHLDESEIWVMRGHSTARYE
                     RLTEGGAKQSWPMWAGDGRTVFFMSDRGGAENVWKVAAAGGEARQVTRFNDGRVL"
BASE COUNT          355 a          790 c          822 g          374 t
ORIGIN      
        1 catgtactcc cagccctgct cgaagacctc taacttctcg cgcgcgaagt caacgtccat
       61 ctcggccgtg accgcgagcg tgcgcgcggg cgtgcgcggg tcgaggggcg cgacctgtat
      121 gcggcggttt tcgaggtaga aaacctcccg gctgtcgggc gagaagtgcg cgaagctctt
      181 gaagccgggc gtcgaggtga gctggcgcgc caccgctggc tcgcgcgcca gctcgtcgag
      241 cggatagacg taaaggttag tctgcccgac ggcgccggct atcatcagcg cccacttccc
      301 gtccgggctt atcgtctggt agagcacgtc cacgccgacg ggcagaaggc tcagccgacg
      361 ccttatccct tccagcacga tctcggtctg cttcttcgcc gcgtcggcct tctgcgcctc
      421 cggcgtgggc gacggggacg gtgtgggaga cgtcgaggga gtcggggaag gggtcgggga
      481 aggagtcggc gcgctcggcg gcgcctcgcg cggcgggacg ggcgactgcg gctggttctc
      541 ctgcttcctg agcgtcggcg acacggactt gggcgtttct tccttgaaga ggtcgcggaa
      601 ctggtcttcg cggaagcgcg gcgtgcgcgg cacgaggtca acgcgcgcga gctggcccgc
      661 ctcagtgcgc tgccccgtgt cgaagagtat gaaggttccg tccggcgacc acgagacggt
      721 gttgctgccg gcgttcgcta ggaagctgac gggctgcggc ttcccttcgc cctcgacggg
      781 cgcgacgaag acgttgcgga agagcttcgc gccgacgggc atgtacgcga tccagcggct
      841 gtcgggcgac cagacgaacg ggcggtctga gttgagcggc gggcgctcca aatcgctggt
      901 cgcaactaac ctctcctgct tcgtctccat gttgagcgcg cgaagctcgc gcccgccgcg
      961 ctcgaaggcg agccacttgc cgtcgggcga gaagcgcggc gtggcgtcgc catgcgagcc
     1021 cgccgtcaac tgcgtctccg tgttggtagc gaagtcgtaa aggaaaattt ggcccgagcc
     1081 gttgcgctcc gagacgtatg cgagcctgcg gctgtccggc gcccatgcgg gctgcgactc
     1141 aatccccgaa gtcgtcgtca cgcgcgtcgc gtcgccgccg tccgaggccg aggcggcgaa
     1201 gacttcgccc cgcgtcacga acgcgacctt ctttccgtcc ggcgagagcg caagctcctg
     1261 aaactggtcg ttcacgcgca gccgctcgac ggcggggccg gccggcgagc cgcgccgggt
     1321 gatgcgaacc tgctcggcgc ggcctgactc cgtgtcgagc ttccacacgc cgaagtcacg
     1381 ctcgaagact atcagccgtc cgtcgcgcga gatgctcggt cagagcacgc gcccgtcgtt
     1441 gaagcgcgtg acctgccggg cctcaccgcc cgccgccgcg accttccaga cattctccgc
     1501 gccgccgcgg tcggacatga agaagactgt gcggccgtcg cccgcccaca tcggccacga
     1561 ctgcttggcg ccgccctcgg tcagccgctc gtagcgggcg gtcgagtggc cgcgcatcac
     1621 ccagatttcc gactcgtcca aatggctgtg acctctacgc caccagtgaa ggtagccgcg
     1681 cccgacgaag gcgaggtctg cgccgtcggg cgagggcgcc gcgcccgact cgttcgcgta
     1741 acggtcggcg ctcacgggca taggcgtccc gccgtcggcg gcgacgcgga agatgtcgtt
     1801 gctggcggag atgtcgcgcg aggtcgagga gaagtagagc cagcggccgt cgggcgacca
     1861 ggcgtcgagc tggtcgaagc cgtcgtcgaa cgtcaggcgc cgcgtgtccc ccgactcgaa
     1921 gtcgaggacg tagaggtcgc cgttccctgt tcgggcggag gtgaaggcga gtcggcggcc
     1981 gtcgggcgag tagagcgggc ggtactcggt cgccgggtgc gagacgagca ggcgcgcctc
     2041 gccgcccgcc gagggaacag tccagatgtc gccgcccgag acgaaggcta tctccgagcg
     2101 gtcgggcgag acggccggct cgtaaaagta tgcccgcgct tccgtcctct ggcccgcgcc
     2161 gccctgcgcc ctcggcgcgg ccgcgccctg ccacataatc gccgccgcca gagcacacgc
     2221 ccacattttt cttaacgcca tccggcctcc gaagattctc cgagctggaa gttgatgaga
     2281 gcagtcgtgg cttcaactat aacagacgcg caggcgcacg cgctcggcaa actttcaggc
     2341 g
//
LOCUS       DASPKR010000046         3227 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_5441, whole genome shotgun sequence.
ACCESSION   DASPKR010000046 DASPKR010000000
VERSION     DASPKR010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3227)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5441"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            70..492
                     /locus_tag="VD968_01340"
     CDS             70..492
                     /locus_tag="VD968_01340"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HYE13065.1"
                     /translation="MVEASVFITIDPSNGLPIYMQIVSQIKTSIALGRLAPEDPLPSV
                     RQLALDLTVNPNTVARAYLELEFEGIIYKRQGHGTFVSSHGVEMSKNERRKVLSELVE
                     KALVEGVNLGLGEEELRETFERVLERIIQSRQAETVGR"
     gene            520..1449
                     /locus_tag="VD968_01345"
     CDS             520..1449
                     /locus_tag="VD968_01345"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE13066.1"
                     /translation="MSANDNFEFGENAIETENLGRKFGNFEAVRGVNMKVQRGTVFGL
                     LGINGAGKSTIIKMIIGHLRPTTGGVRVLGRALEDDLVEIRKRVAYVSENRYLYEWMT
                     VAESIKFTRAFHSTWDDEKAAQLLKRFSLPPDKKIKQLSRGNRARVCLLLALSFNPEL
                     IILDEPTSGLDPIVRRDFIENIVAEISEEGKTVLFSSHIVEEVERVADYVGIINDGEL
                     LLTSSIDDIKASYKRVRYATNGTRPELAGVPGILGVENGRHEQVLTVKGWGDETLRAL
                     GLRGVSEPEVLPVSLEEIFVSTVRAERERRANQ"
     gene            1446..2249
                     /locus_tag="VD968_01350"
     CDS             1446..2249
                     /locus_tag="VD968_01350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13067.1"
                     /translation="MNREMIKATLWKEWRETRWKWLAFAVAFHLPLFVAGLAITLEES
                     VQFDLHAMSDAIAGHVLEVALVAQSVFLITAGLFLLAFFAVGSVGAELDNRSIFFLFE
                     RPVRRGHILLIKYLLGAVQTMTCVGLSILSTLALVYAVLVAGSTHVTLEGSWGSFTNV
                     VANGTRGTVWTMIIGLMVYSATFLFSVLFEKWWIAVIAGAVSLVGMFYYFGGNLFDLI
                     ISAATRGQDGDIDLSLYGRLDPVPILVMLMVSTGLYFAAQYVFARKEMK"
     gene            2321..>3227
                     /locus_tag="VD968_01355"
     CDS             2321..>3227
                     /locus_tag="VD968_01355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13068.1"
                     /translation="MNRLMRKPFLFGGAAAVLLLVAVAWMFARPSAAEAPRLERLLPA
                     ETVGFVQVNNLREQALKVIESDAWRELSKENQAASSLFMMTANHAGALDASYALALVG
                     MGAAAGDRKPQPQFVLVAEFGSWDSRRTFDSRVLRSLRESSKKGVSIREEEYGDATIH
                     VVTSDGREDVTFVRKDRTLYLSNSADALKKVLDVRAGKAKSLETSETFARARSRSSAD
                     DGMFGYLDGAALTRLIESGPSSEENAGVAPFRQLFHGAGASSVQAASFTSAFEGGRVV
                     EHFAVNTTGKEGVLGTIATNPPTSQA"
BASE COUNT          559 a          987 c         1087 g          594 t
ORIGIN      
        1 tttttttgaa accttgcgtt gacccgctcc gtattcgggt gtactgtatt agtgagctag
       61 tacagtgagg tggttgaggc gagcgtgttc ataacgattg acccgtcgaa cgggctgccg
      121 atctacatgc agatcgtcag ccagattaag acgagcatag cgctggggcg gctggcgccg
      181 gaagacccgc tgccctcggt gcgtcagctt gcgctcgacc tgaccgtcaa cccgaacacg
      241 gtcgcccgcg catacctcga gctcgagttc gaggggatca tctacaagcg gcagggccac
      301 gggactttcg tttcgagcca cggcgtcgag atgtcgaaga acgagcgccg gaaggtcttg
      361 agcgagctgg tcgagaaggc tctggtcgag ggcgtcaacc tcggcctcgg ggaagaggag
      421 ctgcgcgaga cgttcgagcg cgtgctcgaa aggataatcc agtcgcggca ggccgagacg
      481 gtcggcaggt gattccgagg ctttcggctg aagataatta tgagcgctaa cgacaacttt
      541 gaattcggcg aaaacgccat cgagacggag aatctcggcc ggaagttcgg caacttcgag
      601 gcggtgcgcg gcgtcaacat gaaagtccag aggggtacgg tcttcggtct cctcggcatc
      661 aacggggcgg gcaagtcaac catcatcaag atgatcatcg gccacctccg gccgacgacc
      721 ggcggcgtgc gggtgctggg ccgcgcgctc gaagacgacc tagttgagat acgcaagcgc
      781 gtcgcttacg tctccgagaa ccgttacctc tacgagtgga tgactgtcgc cgagagcatc
      841 aagttcacgc gcgccttcca ctcgacgtgg gacgacgaga aggcggccca actcctgaag
      901 cgcttcagcc tcccgccgga caaaaaaatc aagcagctct cgcgcggcaa ccgcgcgcgc
      961 gtgtgcctgc tcctggcgct ctcgttcaac ccggagctta tcatcttgga cgagccgact
     1021 tcggggctcg accccatcgt gcggcgggac ttcatcgaga acatcgtggc ggaaatcagc
     1081 gaggagggga agaccgtcct cttctcgtcg cacatcgtcg aggaggtcga gcgcgtcgcc
     1141 gattacgtcg gcatcatcaa cgacggcgaa ctgcttttga cctcctcgat tgacgacatc
     1201 aaggcttcgt acaagcgcgt gcgctacgcg actaacggga cgcggccgga gctggccggg
     1261 gtgccgggca tcctcggcgt cgagaacggg cggcacgagc aggtcttgac cgtgaagggc
     1321 tggggcgacg agaccctgcg cgccctgggc ctgcgcggcg tgagcgagcc ggaggtcttg
     1381 ccggtctcgc tcgaagagat tttcgtgagc accgtccgcg cggagcggga gcggagggcg
     1441 aaccagtgaa ccgtgagatg attaaggcga cgctctggaa ggagtggcgc gagacgcgct
     1501 ggaagtggct cgccttcgcc gtggccttcc acctcccgct cttcgtcgct gggctcgcca
     1561 tcaccttgga ggagagcgtg cagttcgacc ttcatgcgat gagcgacgcg attgcgggac
     1621 acgtcctgga ggtcgcgctg gtggcgcagt cggtcttcct gatcacggcg gggctcttcc
     1681 tgctcgcctt cttcgccgtc ggctcggtcg gggcggagct ggacaaccgg agcatcttct
     1741 tcctgttcga gaggcccgtc cgccggggcc acatcctgct catcaagtac ctgctcggcg
     1801 cggtacagac aatgacgtgc gtcgggcttt cgatcctctc gacgctcgcg ctcgtttacg
     1861 ccgtgctggt cgccggctcg acccacgtga ccctcgaagg ctcgtggggc tctttcacga
     1921 acgtcgtcgc caacgggacg cgcggcacgg tgtggacgat gatcatcggc ctgatggttt
     1981 actcggcgac gttcctcttc tcggtgctct tcgagaagtg gtggatcgcg gtcatcgcag
     2041 gggccgtctc gctcgtcggg atgttctact acttcggcgg gaacctcttc gacttgatca
     2101 tcagcgccgc gacgcgcggc caagacggcg acattgacct ctcgctctac gggcggctcg
     2161 accccgtgcc catccttgtc atgctcatgg tctcgacggg gctctacttc gccgcgcagt
     2221 acgtcttcgc gcggaaggag atgaagtaaa gggccgcgct cgtcggccgc ggctttcgga
     2281 aattttaccc tcgcacgttt tcatcaatcg gaggtgtggt gtgaatagac tgatgcgcaa
     2341 accatttttg ttcggcgggg cggcggccgt gctgctgctc gtcgcggtcg cgtggatgtt
     2401 cgcgagaccc tcggcggccg aagcgccgcg gctcgaaagg ctcctgcccg cggagacggt
     2461 cggcttcgtg caggtcaaca acctccgcga gcaggccctg aaggtcattg agtcggacgc
     2521 gtggcgcgag ctttcgaagg agaaccaggc ggccagctcg ctctttatga tgacggcgaa
     2581 ccacgcgggc gcgctcgacg ctagctacgc gctggcgctc gtcgggatgg gcgcggcggc
     2641 gggcgaccgt aagccgcagc cgcagttcgt gctcgtcgcc gagttcggga gctgggactc
     2701 gcgccgcacc ttcgacagcc gcgtgctgcg ttcccttcgc gagtcttcta agaagggcgt
     2761 gagcatcagg gaggaggagt acggggacgc gaccatccac gtcgtcacct ctgacgggcg
     2821 cgaagacgtg accttcgtgc ggaaggaccg gacgctctac ctctcgaact ccgcggacgc
     2881 gctcaagaag gtcttggacg tgcgcgcggg gaaggcgaag tcgcttgaga cgagcgagac
     2941 tttcgcgcgg gcgcgctcgc gctcctcggc cgacgacggg atgttcggct acctggacgg
     3001 cgcggctttg acgcggctga ttgaaagcgg cccttcgtcc gaagaaaacg cgggcgtggc
     3061 gcccttccgc cagctcttcc acggcgcggg cgcaagctcc gtccaggcag cctccttcac
     3121 gagcgcgttt gagggcggcc gcgtggtcga gcacttcgcc gtaaacacga cgggcaagga
     3181 gggcgtgctc ggcacgattg cgacgaaccc accgacctcg caggcgc
//
LOCUS       DASPKR010000047         2496 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1429803, whole genome shotgun sequence.
ACCESSION   DASPKR010000047 DASPKR010000000
VERSION     DASPKR010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1429803"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..854)
                     /locus_tag="VD968_01360"
     CDS             complement(<1..854)
                     /locus_tag="VD968_01360"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYE13069.1"
                     /translation="MEFDLSEDQQQIKMSVREFAEGEIAPHVREWDERQHFPSELVPK
                     LAEQGFMGVIFPEEYGGAGMGYIEYATIIEELSRVDGSVGISVAAHNSLCSNHIYVFG
                     TEEQKRKYLVPLAQGKHLGAWGLTEPGAGSDASGTRTTAVRKGQGWVVNGSKNFITHA
                     IHGDTCVAVASTDRAMRSKGITAFIFEKGMKGFGPGKKEDKLGLRASETASVIFEDCY
                     VPDENRLGPEGLGFIQAMQILDGGRISIAALAVGIAQGAYESALKYSKERNQFGRPIS
                     EFQAIQFKL"
     gene            complement(989..1789)
                     /locus_tag="VD968_01365"
     CDS             complement(989..1789)
                     /locus_tag="VD968_01365"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HYE13070.1"
                     /translation="MSERLQKLIAAAGLASRRHAEELIEAGHVTVNGEVVREPGTKAD
                     PARDHIKVRGRLINPLLAGREKVYVLLNKPRGYLSSVSDPEGRPLVTDLVPHSLGRLH
                     PVGRLDFNTEGLLILTNDGELTNYVTAARNHVKKVYEVKVKGVPTEEQVERLRRGVRL
                     EDGVRTAPAEINRTAETGSNAWFEVVLGEGRNQQIRRMFDSIGHSVLKLRRTAIGPVR
                     DETLRPGSYRLLTPQEVARLKGERRGRAGKPGAKGRSAKKVAAKGRAR"
     gene            complement(1797..2378)
                     /locus_tag="VD968_01370"
     CDS             complement(1797..2378)
                     /locus_tag="VD968_01370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13071.1"
                     /translation="MLKRNSLFVVIACAAFALTASPAARAQEGDLPPVIYKNQRPQRR
                     VKVGRAEVFYFRGARVVRLMQLELQRDTGEALYVDMSFDLVGRRPAAPSVVHVTFARY
                     SSSAQFGDDAARKVSAVADGATLDLGQFDYSVFEGMSGVPFTEIMGADVSFKTIARLA
                     SSKSAALRLGGREVALTGEHLSALRDLVEAAKR"
BASE COUNT          380 a          841 c          799 g          476 t
ORIGIN      
        1 agcttgaact gtatggcctg gaactccgag atcgggcggc cgaactggtt gcgttccttc
       61 gagtacttga gggcggactc gtatgcgccc tgcgcgatgc ctactgcgag cgcggcgatg
      121 gagattcggc cgccgtcaag aatctgcatg gcctgtatga agcctaggcc ctccggcccg
      181 aggcggttct cgtccggcac gtagcagtct tcgaagatga cgctcgccgt ctcggaggcc
      241 cgaaggccga gcttgtcctc cttcttgccg gggccgaagc ccttcatgcc cttctcgaag
      301 atgaaggccg tgatgccctt cgagcgcatc gcgcggtcgg tcgaggccac ggccacgcac
      361 gtgtcgccgt ggatggcgtg cgtgatgaag ttcttcgagc cgttgacgac ccaaccctgc
      421 cccttgcgca cggccgtcgt gcgagtcccc gaggcgtcgg agcccgcgcc cggctctgtc
      481 agcccccacg cgccgaggtg cttcccctga gctagcggga cgaggtactt gcgcttctgc
      541 tcctcggtgc cgaacacgta gatgtggttc gagcatagcg agttgtgcgc cgcgaccgag
      601 atgcccacgg agccgtcaac gcgcgaaagc tcctcgatga tggtcgcgta ctctatatag
      661 cccatcccgg cgccgccgta ctcctcgggg aagatgacgc ccatgaagcc ctgctcggcg
      721 agcttcggga caagctcgga gggaaagtgc tggcgctcgt cccactcgcg cacgtgcggc
      781 gctatctcgc cctctgcgaa ctcgcgaacg ctcatcttta tctgctgctg gtcttcgctt
      841 aagtcgaact ccatctgtac ggactgcccc tcgggttaaa gatttttctg cggtcatttc
      901 attctacttg gaatgtggcg acaagcgaag cgcccgctaa cgggcgcttg tgctgtttat
      961 tctgcaacga atgccccggc ctttcgtcct accgcgcacg ccccttggct gcaaccttct
     1021 tcgcgctgcg ccctttcgct ccgggcttgc ccgcacgccc gcgcctctcg cccttgaggc
     1081 gcgcgacctc ctgcggcgtg agcagacggt agctgccggg cctgagcgtc tcgtccctga
     1141 cagggccgat ggccgtgcgc cggagtttca agacggagtg gccgattgag tcgaacatgc
     1201 ggcgaatctg ctggttgcga ccctcgccga gcacgacctc gaaccaggcg ttcgagcccg
     1261 tctcggccgt ccgatttatc tcggccgggg ccgtccgcac gccgtcttcg aggcggacgc
     1321 cgcggcgcag ccgctcgacc tgctcctccg tcggcacgcc tttgaccttc acctcataaa
     1381 ccttcttgac gtggttgcgg gcggctgtga cgtagttcgt caactcgccg tcgttcgtca
     1441 gtatcagcag cccttcggtg ttgaagtcga gccggcccac ggggtgcagg cggccgagcg
     1501 aatgcggcac gaggtctgtg acgagcgggc ggccctcggg gtctgagacg ctcgaaaggt
     1561 agccgcgcgg cttgttgagc agcacgtaaa ctttctcgcg ccccgcgagc agcgggttaa
     1621 tcaaccggcc gcgtaccttt atgtggtcgc gggcggggtc ggccttcgtc cccggctcgc
     1681 gcacgacctc gccgttgacc gtgacgtggc ctgcctcgat caactcctct gcgtgcctgc
     1741 gcgatgcgag gcccgccgcc gctatcagct tttggagtcg ctcgctcatc gcgcccctac
     1801 cgtttggctg cctcgaccag gtcgcgcagg gccgagaggt gctcgccggt cagcgcgact
     1861 tccctgcccc cgagccgcag cgccgcggac ttactcgacg cgagccgcgc gatggtcttg
     1921 aagctcacgt cggcgcccat gatttccgtg aaggggacgc cgctcatccc ctcgaagacc
     1981 gagtagtcga actgcccgag gtcgagcgtg gcgccgtcgg cgacggccga gaccttgcgc
     2041 gccgcgtcgt cgccgaactg cgccgacgat gagtagcgcg cgaacgtcac gtgcacgacc
     2101 gaaggcgcgg ccgggcggcg gcccacgagg tcgaagctca tgtcaacgta gagcgcttcg
     2161 ccggtgtcgc gctgaagctc caactgcatg agccgcacga cgcgcgcccc gcggaagtag
     2221 aagacctcgg cgcgcccgac cttcacgcgc cgctgcgggc gctggttttt atagatgacg
     2281 ggcggaagat ccccctcttg cgcacgcgcg gctggggagg ccgtgagagc gaaggcggca
     2341 caggcgatga cgacgaacag gctgtttctc ttaagcatac gggtaaggct tcactcggcg
     2401 ccgcccgcca ggtcttcgaa gtcctcgacg ttgggcagct cgctcaaatc cttgaggccg
     2461 aattgcagga ggaattcttt cgacgtgccg tacatc
//
LOCUS       DASPKR010000048         7588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_524125, whole genome shotgun sequence.
ACCESSION   DASPKR010000048 DASPKR010000000
VERSION     DASPKR010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7588)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7588
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_524125"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..629)
                     /locus_tag="VD968_01375"
     CDS             complement(<1..629)
                     /locus_tag="VD968_01375"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE13072.1"
                     /translation="MLEVETSGVMLFTDGGRRQSARGAEAPEAALVEAVRAGDREAFG
                     RLYHLYAPLVHGVLLARVPYDHVGDLVQDVFFTAFRKIGGLRDAARFGPWVAMIARNR
                     ATDFHRRARETEELKEGLAETPPATGEAAEALEAIRELPEAYRETLVLRLVEGMTGPE
                     IAERTGLQPASVRVNLHRGMKLLRERLGRKALRDERLPLGQDGRARRGGA"
     gene            complement(698..856)
                     /locus_tag="VD968_01380"
     CDS             complement(698..856)
                     /locus_tag="VD968_01380"
                     /inference="COORDINATES: protein motif:HMM:NF039953.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5989 family protein"
                     /protein_id="HYE13073.1"
                     /translation="MGKLSLAGEVWLFLRQNKKLWLLPIVIVLLLLGALLVFAQSSAL
                     APFIYTIF"
     gene            complement(896..1333)
                     /locus_tag="VD968_01385"
     CDS             complement(896..1333)
                     /locus_tag="VD968_01385"
                     /inference="COORDINATES: protein motif:HMM:NF039992.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SxtJ family membrane protein"
                     /protein_id="HYE13074.1"
                     /translation="MTEPGGRVRREHGGAGVATDAQARKTALVVAAVLLGVAAWNLYR
                     GRTVVVAVAGGTALLLIVVALAAPRAARLFHAAWMRLAVALGYVNSRVLLTLMYYGVF
                     APYGLASRLAGRDPLRRRSERGESYWVERKRTRQEREQFERLF"
     gene            complement(1326..3167)
                     /locus_tag="VD968_01390"
     CDS             complement(1326..3167)
                     /locus_tag="VD968_01390"
                     /inference="COORDINATES: protein motif:HMM:NF014589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase"
                     /protein_id="HYE13075.1"
                     /translation="MAVNILGISAYYHDSAACLVRDGRVVAAAQEERFTRKKHDHRFP
                     SRAVEFCLKHAGLRPDDLTHVAFYDKPLLKFERLLETYIDYAPRGLRSFLMAMPLWLR
                     EKLWAREQIEKESGFGGKVLFTEHHESHAASAFFPSPFESAAVLTMDGVGEWATSSYG
                     YGRGNELHLLRELHFPHSLGLLYSAFTYYTGFRVNSGEYKVMGLAPYGEPRYVGKILD
                     ELVDLREDGSLRLNMKYFDFAAGLTMTNAAFDRLFGGPPRKPEGELTQREMDLARSVQ
                     EVTEEAMLRMARHAHKQTGERNLCLAGGVALNCVGNGRILREGPFERVWVQPAAGDAG
                     GSLGAALSVWHQYLGNERRVEDVCRGRSDGMSGSYLGPEFSNEEIEEFLSSTGAQYKR
                     VGRAELAGTAARLLAAEKVVGWFQGRMEFGPRALGARSILGDPRSPRMQSQMNLKIKF
                     RESFRPFAPSILRERVSDFFELDCDSPYMLLVAPVREHLRREMTEGERRLFGIEKLNV
                     PRSVIPAVTHVDYSARVQTVRREDNELYYELLSAFERLTGCPVLVNTSFNVRGEPIVC
                     APAEAYACFMRTEMDCLVMGDFLLLKGEQAEAAEAADFSWQEEFQLD"
     gene            3311..3829
                     /locus_tag="VD968_01395"
     CDS             3311..3829
                     /locus_tag="VD968_01395"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dps family protein"
                     /protein_id="HYE13076.1"
                     /translation="MSSNVGAMPINIGIEEGDRREIADGLSRLLADTYTLYLRTHNYH
                     WNVTGPMFQTLHLMFETQYNELALAVDLIAERIRALGFPAPGTYAEFARLSSIKEEEG
                     VPSATEMIRKLVEGQEAVVRTARGIFPAVERVSDEPTADLLTQRMQLHEKTAWMLRSL
                     LAEEGTAAAKGA"
     gene            complement(3878..5587)
                     /locus_tag="VD968_01400"
     CDS             complement(3878..5587)
                     /locus_tag="VD968_01400"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HYE13077.1"
                     /translation="MPRAKKSARQGPPASQAPGSLEEFARAAESVAATTKKLEKAALL
                     GAYFDRLGDEDLARAARYFAGHVFPLSDARTTNVGTGLLRDAISEVTGLDVENLRPRY
                     VRLGDSGDVAFEAFTETRGGATSPSLTLAEAQSLVELLSGTRGTKNKKALLVGALSGA
                     TPLEAKYLVKLLAGDLRIGLKEGLVEDAVARAFGRPLADVARVNMFTGDIGETAVRAR
                     RGELEGVSMRLFHPIKFMLATAAEDLSDIARTMPEEFMVEDKFDGIRAQAHAQGGRVA
                     LYTRTLDEVTHRFPELVAPLQSLASDAVIDGEIVPVRGASILPFLELQKRLGRKTVGE
                     ELLRAVPVAFVAYDLLYAAGRVLIDEPLSARRAELEALAGGGDEAAALRLSGVKLLRE
                     VMALDEEFDAARSRGNEGLMIKDPRSRYKPGKRGREWLKLKRALATLDVVVTAVEVGH
                     GKRRHLLSDYTFAVRRSEEDPELLNVGKAYSGLTDAELAELTEWFRAHTLQEFAHGRV
                     RVVEPKIVLEVTFDRVQESKRHKSGYALRFPRILRLRDDKSPEEIDTLETVRRIAKEL
                     EAG"
     gene            complement(5597..6547)
                     /locus_tag="VD968_01405"
     CDS             complement(5597..6547)
                     /locus_tag="VD968_01405"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-binding protein"
                     /protein_id="HYE13078.1"
                     /translation="MREAPRIVSLLPSATEIVCALGLEDALVGVTHECDFPASVAGKP
                     RLTASRVSHETMTSREIDHAVRSQLDGHGSIYDLDEALLRELRPDLIITQELCEVCAV
                     SYKTVLQAARLLAGEARVLSLEPNTIRDIFANIREVGSLTGREAEAEAVVGELSVRLD
                     ALAVLLTEVETRPRTLVLEWLEPPFAPGHWVPEQVAFAGGDASFGSAGAKSRTTTADE
                     IRDYAPEVIVLAPCGYYKEDTLRALRSARLPAGWGELPAVHEGRAWAVDATSYFSRPG
                     PRVVEGAEILSRIIHPEVFGEPTELEAARVAPEMMLAAES"
     gene            6691..7056
                     /locus_tag="VD968_01410"
     CDS             6691..7056
                     /locus_tag="VD968_01410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13079.1"
                     /translation="MQETEGLRVEGAVDHIAVRSEDLRADVREFERLGFRVETLYEDW
                     AMLRDARGFGVALLPPGSKHPPHMALRVESREELEEAARRENRPVREHRDRSLSFYTR
                     GVGGQALEVIYYPPGYKKE"
     gene            7132..7584
                     /gene="tatA"
                     /locus_tag="VD968_01415"
     CDS             7132..7584
                     /gene="tatA"
                     /locus_tag="VD968_01415"
                     /inference="COORDINATES: protein motif:HMM:NF011430.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HYE13080.1"
                     /translation="MPTVLLVFEFLGTTELMVIALVALIIFGPRKLPEIGRKLGRGMA
                     EFKRASEDFKRTWEYEVEVERRQEAAPRVEQETAAARTSLLDEGSRGDTAEDIFTGQA
                     VHPTAEPDGAQTIPRTPPGATELPEAEANTAAAPAHEEPEAGAREPTA"
BASE COUNT         1234 a         2596 c         2563 g         1195 t
ORIGIN      
        1 gcacctcctc gtcgggctcg cccgtcttgt cccagaggta gtcgctcatc tctcaacgcc
       61 tttcgcccga gcctctcgcg caggagcttc atcccgcggt gcaggttcac gcgcacggag
      121 gcgggctgca atcccgtccg ctcggctatc tccggcccgg tcatgccctc gacgagcctg
      181 agcaccagcg tctcgcggta agcctcgggc agctccctta tagcttcgag cgcctcggcg
      241 gcctcgcccg tcgccggagg cgtctcggcc agcccctcct tcaactcctc ggtctcgcgc
      301 gcacggcggt gaaaatccgt cgcgcggtta cgcgctatca ttgccaccca agggccgaag
      361 cgcgcggcgt cgcgtaagcc gccgatcttc ctgaaggccg tgaagaacac gtcctgcacg
      421 aggtcgccga cgtggtcgta aggcacgcgc gcgagcagca cgccgtgcac gagcggcgcg
      481 tagagatggt agagccgccc gaacgcctcc cggtcgcccg cgcgcacggc ctcgacgagc
      541 gcggcctcgg gcgcttccgc cccgcgcgcc gactgcctgc gccctccgtc cgtgaagagc
      601 atcacgccgc tggtctcgac ctcgagcatt tcgggaatcc gcgagccttc cgaccttaga
      661 gacgcgtgcg ggggcgcgag cgttaacgcc tgagttttca gaatatggtg tagatgaagg
      721 gcgcgagcgc ggagctctgc gcgaagacga gcagggcgcc cagaagcagt agcactatga
      781 cgatgggcag cagccagagc ttcttgttct gccgcaggaa cagccagacc tccccggcca
      841 gtgagagttt gcccatgagc gccttaatcc tcccgtgctt cgaagaactt acttgtcaga
      901 acagccgctc gaactgctcc cgctcctgcc tggttctctt tctctcgacc cagtagctct
      961 ccccgcgctc cgagcgccgc cggagcgggt ctcggcccgc gaggcgcgac gcgagcccgt
     1021 agggcgcgaa cacgccgtag tacatcagag tcagcagcac gcggctgttg acgtagccga
     1081 gcgcgaccgc cagccgcatc cacgccgcgt ggaagaggcg cgccgcgcgc ggcgccgcga
     1141 gggcgacgac gattaagagc aacgcggtgc cgcccgcgac ggcgacgacg acggtgcgcc
     1201 cgcggtacag gttccacgcg gcgacgccga gcagcacggc cgcgaccacg agcgccgtct
     1261 tccgcgcctg cgcgtcggtc gcaacccccg cgccgccgtg ctcgcgcctg actctcccgc
     1321 ccggctcagt caagctggaa ctcctcctgc cacgaaaaat ccgccgcctc ggccgcctcc
     1381 gcctgctcgc cctttagcag aaggaagtct cccatcacga ggcagtccat ctccgttcgc
     1441 atgaagcagg cgtaggcttc ggccggggcg cacacaatcg gctcgccgcg cacgttgaag
     1501 gaggtgttga cgagcacggg gcagccggtg aggcgctcga aggctgagag cagctcgtaa
     1561 tacagctcgt tgtcctcgcg cctgacggtc tgcacgcgcg ccgaatagtc aacgtgcgtc
     1621 accgccggga tgacggagcg cggcacgttc agcttctcga tgccgaacag gcgccgctcg
     1681 ccctccgtca tctcgcgccg caggtgctcg cgcacgggcg cgaccagtag catgtagggc
     1741 gagtcgcagt cgagctcgaa gaagtcggag acgcgctcgc gcaagattga cggcgcgaac
     1801 gggcggaaac tttcgcggaa ctttatcttc aagttcatct gcgactgcat gcgcggcgag
     1861 cgcgggtcgc cgagtatgct gcgtgcgccc agggcgcgcg ggccgaactc catgcgcccc
     1921 tggaaccacc cgaccacctt ctccgcggcg agcagccgcg ccgccgtccc ggccagctcc
     1981 gcgcgcccga ctcttttgta ctgcgcgccg gttgaagaca ggaactcctc tatctcctcg
     2041 ttcgagaatt ccggcccgag gtaggagccg ctcatgccgt cggagcggcc gcggcagaca
     2101 tcctcgacgc ggcgctcgtt gcccaggtac tggtgccaga ccgagagcgc cgcgcccaga
     2161 gagccgcccg cgtcgcccgc ggcgggctga acccacacgc gctcgaaagg cccctcgcgc
     2221 agtatccggc cgttgccgac acagttgagc gcgacgcccc ccgcgaggca caggttgcgc
     2281 tcgcccgtct gcttgtgcgc gtggcgggcc atgcggagca tcgcctcctc ggtcacctcc
     2341 tgcacggagc gcgccaagtc catctcgcgc tgcgtcaatt cgccctcggg cttgcgcggc
     2401 gggccgccga agagacggtc gaacgccgcg ttcgtcatcg tgagccctgc ggcgaagtcg
     2461 aaatacttca tgttgaggcg caagcttccg tcttcgcgca ggtcaaccag ctcgtcgaga
     2521 atcttcccca cgtagcgcgg ctcgccgtag ggcgcgaggc ccataacctt gtactcgccg
     2581 gagttgacgc ggaagcccgt gtagtaggtg aaggccgagt agagaaggcc cagagagtgc
     2641 gggaagtgta gctccctgag caggtgcagc tcgttgccgc ggccgtagcc gtaggaggac
     2701 gtggcccact cgccgacgcc gtccatcgtg agcacggccg ccgactcgaa cggagagggg
     2761 aagaaggccg aggcggcgtg cgattcgtgg tgctcggtga agagaacctt gccgccgaag
     2821 cccgactcct tctctatctg ctcgcgcgcc cagagcttct ctcgcagcca caaaggcatc
     2881 gccatcaaaa acgaacgcag gccccgcggc gcgtagtcta tgtaggtttc caggagccgc
     2941 tcgaatttca ggagcggctt gtcgtaaaag gctacgtggg tcaggtcgtc gggccggagc
     3001 cccgcgtgct tcaggcagaa ctcgacggct cgcgagggga agcggtggtc gtgcttcttc
     3061 ctcgtgaagc gctcctcctg cgcggcggcg actacgcggc cgtcgcgcac caggcacgcg
     3121 gccgagtcgt ggtagtaggc tgaaatgccg aggatgttta ctgccatctt ttctgtagtc
     3181 gcggttacag acgcgggcgc gcgggagatt ttatactgtc ggcgtcgtgg gcgcgaacgc
     3241 ccgcggcggc cggttgaccg cgcgccggaa tgaaaataag ctagcggcaa aagggaggga
     3301 cataaaacta atgtcgagca atgttggggc gatgcccatc aacataggca tcgaggaggg
     3361 cgaccgacgc gagatagccg acggcctttc gcgcctgctt gcggacacct acacgcttta
     3421 tcttcgcacg cacaactatc actggaacgt cacggggccg atgttccaga cgctgcacct
     3481 tatgttcgag acgcagtaca acgagctggc cctcgccgtt gacctcatcg ccgagcgcat
     3541 acgcgcgctg ggcttccccg cgcccggcac ttacgccgag ttcgcgcgcc tctcttcaat
     3601 caaggaggag gagggcgtgc cgtccgcgac ggagatgata cgcaagctcg tcgagggcca
     3661 agaggcggtc gtccgcacgg cgcgcggcat cttccccgcg gtcgagagag tgagcgacga
     3721 gcccacggcc gacctgctca cgcagcgcat gcagctacac gagaagaccg catggatgct
     3781 ccgcagcctc ctcgccgagg aaggcacggc cgccgcgaag ggcgcgtaaa agaagaggct
     3841 ggagactagg ggctagaggc tggctaggag gtgactctta gccggcctct aactctttgg
     3901 cgatgcggcg caccgtctcg agcgtgtcaa tctcttctgg cgacttgtcg tcgcgaaggc
     3961 gcagtatgcg cgggaagcgg agggcgtagc cgctcttgtg ccgcttagac tcctgcacgc
     4021 ggtcgaaggt gacttctaac actatcttcg gctcgacgac gcgcacgcgc ccgtgcgcga
     4081 actcctgaag ggtgtgggcg cggaaccact cggtcagctc ggcgagctcg gcgtcggtca
     4141 gccctgagta agccttgccg acgttgagaa gctcggggtc ttcctccgag cggcgcacgg
     4201 cgaaggtgta gtcggagagg aggtgccggc gcttgccatg gccgacctcg acggcggtga
     4261 cgaccacgtc gagcgtggcg agcgcgcgct tcagcttcag ccactcgcgc ccgcgcttgc
     4321 ccggcttgta gcgggagcgc gggtctttaa tcatcaaccc ctcgttgccg cgagagcgcg
     4381 ccgcgtcgaa ctcctcgtct agcgccatga cctccctcaa cagcttcacc cccgagagcc
     4441 tcagcgccgc ggcctcgtcg ccgccgcccg cgagcgcttc gagctcggcc cttcgcgcgc
     4501 tcaaaggctc gtcaatcagc acgcgccccg cggcgtaaag caggtcgtag gcgacgaagg
     4561 cgacggggac tgcccgcaga agctcttcgc ccacggtctt gcggcccagc cgcttttgca
     4621 attcgaggaa gggcaggatt gaggcgccgc gcacggggac gatctcgccg tcaatgacgg
     4681 cgtcggaggc gagcgattgg agcggcgcga ccagttcggg gaagcggtgc gtcacctcgt
     4741 cgagcgtgcg cgtgtagagc gcgacgcggc cgccctgcgc gtgcgcctgc gcgcgtatgc
     4801 cgtcgaactt gtcctcgacc atgaactcct cgggcatcgt gcgcgcgatg tccgagaggt
     4861 cttctgccgc cgtggcgagc atgaacttga tagggtggaa caggcgcatc gagacgcctt
     4921 cgagctcgcc gcggcgggcg cgcacggccg tctcgcctat gtcgcccgtg aacatgttga
     4981 cgcgcgcaac gtccgctagc gggcggccga aggcgcgcgc gacggcgtcc tcgacgagcc
     5041 cctccttcag acctatgcgc aggtcgccgg cgagcagctt gacgaggtac ttggcttcga
     5101 gcggcgtcgc gccggagagg gcgccgacca gcagcgcctt cttgttcttc gtcccgcgcg
     5161 tcccgctcag aagctctacg agcgactgcg cctcggcgag agtgagagag ggggacgtcg
     5221 cgccgccgcg agtctcggtg aacgcctcga aggccacgtc gcccgagtcg cccaggcgca
     5281 cgtagcgcgg gcgcaggttc tccacgtcca agcccgtgac ctcgctaatg gcgtcgcgca
     5341 ggaggccggt gcctacgttc gtcgtgcgcg cgtcgctcaa ggggaagacg tggccggcga
     5401 agtagcgcgc ggcgcgcgcc aggtcttcgt cgccgaggcg gtcgaagtag gcgcccaaga
     5461 gcgcggcctt ctccagcttc ttcgtcgtcg ccgcgaccga ctcggccgcg cgcgcgaact
     5521 cttccagcga gcccggcgcc tgactggcgg gcggtccctg cctggcagat tttttagcgc
     5581 gcggcattgg cgggatttat gattctgcgg cgagcatcat ctccggggcg acgcgggcgg
     5641 cctccagctc ggtcggctcg ccgaagactt cggggtggat tatgcgggag aggatttcgg
     5701 cgccttcgac tacgcgcggg ccgggacggc tgaagtagct cgtcgcgtca acggcccagg
     5761 cccggccctc gtgcacggcc ggcagctctc cccagcccgc gggcaggcgc gccgaccgga
     5821 gcgcgcgcag agtgtcttcc ttgtagtagc cgcacggcgc gagcactatc acctcgggcg
     5881 cgtagtcgcg tatctcatcg gccgtcgtcg tgcgcgactt cgcgccggcc gagccgaacg
     5941 aggcgtcgcc gcccgcgaag gcgacctgct cgggaaccca gtggcctggc gcgaagggcg
     6001 gctctagcca ttcgaggacg agcgtgcgcg gccgggtctc gacttcggtg agcagcacgg
     6061 ccagcgcgtc gagccgcacg gagagctcgc cgactaccgc ctcggcctcc gcctccctgc
     6121 cggtcaggct ccccacctcg cgtatgttgg cgaagatgtc cctgatggtg ttcggctcga
     6181 gcgacagcac gcgcgcctcg ccggcgagca ggcgcgccgc ctgtaggacg gtcttgtagc
     6241 tgacggcgca gacctcgcag agctcctgcg tgattatcag gtcggggcga agctcacgca
     6301 gcagcgcctc gtcgaggtcg tagatggagc cgtggccgtc cagctgcgag cgcacggcgt
     6361 ggtcaatctc gcggctcgtc atcgtctcgt gcgagacgcg gctggccgtg agcctcggct
     6421 tgcccgcgac cgacgcgggg aagtcgcact cgtgcgtgac gccgacgagc gcgtcttcga
     6481 ggccgagcgc gcagacaatc tccgtcgccg acggtaaaag cgaaacgatg cgcggcgctt
     6541 ctctcaatcc gttgagccct tccgacttgt gcgttgtaag cttgcccgag cttggcgcac
     6601 gcgcgcgggg gctgtcaagg caggccgccc cgcgcggctt tcgcgcccgc acgccgaagg
     6661 gttacaatcc acgccgaagg gaggccggcg atgcaggaga cggagggttt gcgggtcgag
     6721 ggcgccgtgg atcacatagc cgtgaggtct gaagacctcc gcgcggacgt gcgcgagttc
     6781 gagcggttgg gcttccgcgt cgagacgctc tacgaggact gggcgatgct cagggacgcg
     6841 cgcggcttcg gcgtggcgct gctaccgccg ggttcgaagc acccgccgca catggctctg
     6901 cgcgtcgagt cgcgcgagga gctagaggag gccgcgcgcc gcgagaaccg gcccgtccgc
     6961 gagcaccgag accgctcgct ctccttttac acgcgcggcg tcggcggcca ggcgctcgaa
     7021 gtcatctact acccgccggg ctacaagaaa gaatagtttc aggttccggt ttcaagttcc
     7081 gagcgaccgc ccgacttgaa accccggagc cttgaacccg gaacttagct catgccgacc
     7141 gttcttctgg tcttcgaatt tctggggacg actgagctga tggtgatagc gctcgtggcg
     7201 ctcatcatct tcgggccgcg caagctcccc gagatagggc gcaagctcgg ccgcggcatg
     7261 gccgagttca agcgcgcctc cgaggacttc aagcgcacgt gggagtacga ggtcgaggtc
     7321 gagcgcaggc aggaggccgc cccgcgcgtc gagcaggaga cggcggccgc gcgcacttcc
     7381 ctgctcgacg aaggctcgcg cggcgacacg gccgaggaca tattcaccgg ccaggccgtg
     7441 cacccgacgg ccgagcccga cggcgcgcag accatcccgc gcaccccgcc cggcgcgacg
     7501 gagctccccg aggccgaagc caacaccgcc gcagcgcccg cgcacgaaga gccggaggcc
     7561 ggcgctcgcg aaccgacggc ttaaaagc
//
LOCUS       DASPKR010000049         7180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_135859, whole genome shotgun sequence.
ACCESSION   DASPKR010000049 DASPKR010000000
VERSION     DASPKR010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7180)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7180
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135859"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..496)
                     /locus_tag="VD968_01420"
     CDS             complement(<1..496)
                     /locus_tag="VD968_01420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13081.1"
                     /translation="MARESYEEVVWADAGRKLDGVCREAEEARRAGLNVLVVAHFEGT
                     LSAAAAALRERGIEHRSGSSLEPSSLCGAGASVWLALAAHMRKPESHASAAAGGPERL
                     RTIVAEHHPLASRDRAVVEAVRALPCAARVTFHAALTDPLFSRFGGERILGLMKRMGL
                     DESEP"
     gene            614..829
                     /locus_tag="VD968_01425"
     CDS             614..829
                     /locus_tag="VD968_01425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13082.1"
                     /translation="MPLESNSAASVSPALVFELDNGSSFTFNFQMDGRVTVIGFQDGR
                     VVTGSLEDEQVEELREALNEYVTKRKG"
     gene            890..2701
                     /locus_tag="VD968_01430"
     CDS             890..2701
                     /locus_tag="VD968_01430"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE13083.1"
                     /translation="MFYRAPAARSKTSPTLLIALLAGAFLYAPAEARAQQDFERDIDA
                     SGQVELRVKNRLGRVTVLAEDDRSQVSVRAASAGQPVGERDVRVETGTGSVTIDVERE
                     SARKRDAASDGRKVQLSPAQIERERIDVTVRVPARSRVVVETEAGAVDVVGNVSEAEV
                     RTDTGTIRADVPLDALRYSFRWSLSRPRFFSEVELPKVKQPRGGGYEISGRFGDNKKA
                     KKEERVRLDLETARGVLLFGVKDESRVPSDLRERELTEAARAVIRSGDVELIDAIRKA
                     APRLVGEYAATLPPREGEPVLGTRAANPFDVKTPAGAGLARVQARVTDRTGRAISGLT
                     AKDFTVTEDGQAREVREVTPATAPFNLVLLLDVSGSVEERLDFIRKAALAFVNTIGPQ
                     DRVAVVSFRDDVQLISEFTTDRQLLAQRIKRIQAGGATALYDALAYSLVHTLKPLRGE
                     RTGIVVLSDGDDNRSFVTLPAILEAVLESGAIIYPLYVPSGLIPASGAPQPVTTLDPM
                     RTRYLTLTSRAGEEGRKLAELSGGTFYPVTRVEQLQQAYDDVAAQLRTAYTITYESAA
                     GSRPGARVRVRVAREGASVRLSPAVGVAEGAAARPSP"
     gene            2783..3895
                     /locus_tag="VD968_01435"
     CDS             2783..3895
                     /locus_tag="VD968_01435"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE13084.1"
                     /translation="MKTRTASLLALAFLLLPFHSAPAGLARQEPPAAPAPTQTPTPTP
                     SPSPTPAPTPDEADDVERINTDLTNVLLSATDSKRRFVTTLKAEDLRVLEDGVEQRLI
                     SFQQETDAPLALAVLVDTSASQAGVLRDEQEAARAFFASVLRPGKDTGAVVSFTGITR
                     VEQPPTGERERLNAAIDATKVLYPVNSPECEDEDTPEEVRVRCQTAVWDAIAITSGEV
                     LSRTPETARRAIVLLSDGDDYSSKLTIYQSVEHAARNNVVVYSIGIRDRDVGVGDLRK
                     DNLRRVSEETGGRAFFPKNRAELDSAFAQVERELRSQYLLSYSPTNKARDGRYRRVTV
                     EIVNPALRKQKLRLLYRRGYYARGGERPAPAATNDD"
     gene            3961..5367
                     /gene="xseA"
                     /locus_tag="VD968_01440"
     CDS             3961..5367
                     /gene="xseA"
                     /locus_tag="VD968_01440"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HYE13085.1"
                     /translation="MTRPLLMSLFDEAERRPLTVSELTSQVRGTLENRFSAVWVEGEI
                     SNFKAAPSGHWYFTIKDEGAQVRAACFRGINSRIRFRPSDGLLVRVRGRLTVYEPRGD
                     YELMVEALDPVGAGALRVAFEQLKERLAAEGLFDEELKRELPILPRRIGVVTSPAGAA
                     VRDIIRTIERRTRTVSILVAPARVQGEGAGREIARALAALNEHHLRAVAQGRVEEQLD
                     AVIVGRGGGAAEDLWAFNDEELARAIRASALPVISAVGHETDFTIADFAADVRAATPT
                     AAAELVAEREDEIADYVESLTHNLVNSVRYRVISERARAQELAMSHGFDEVRSRLRAA
                     RSEADSAALRLERLLKERAARTRRRLDDAACRLSPAGMAARAAGARVRLALAGAGLEA
                     AARARQDDARGRLAVAAASLDALSPLAVLGRGYALAEDERGEILRKSSAAREGERVRV
                     RLAEGALRCRVEEVEGET"
     gene            5371..6117
                     /locus_tag="VD968_01445"
     CDS             5371..6117
                     /locus_tag="VD968_01445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13086.1"
                     /translation="MSHPTQGRGGRKSRIVIDVTKAQAEAQARRARGRGRGRRILSVA
                     ALVVLGVVLLAFAGGYFWWQSYKKGPAYSLALMVDAARRDDMQAVESLIDSDTIAQGF
                     IPQVIERLTGPNAPPLTPQARASVATALPQLIPRVRETAREEVAAMAKSAAGPLRTGA
                     NLPFPLFAVALSRAVNIKEEGDTAVVTIPGVDASSEMTMRRDGERWKVINVRDEQLAA
                     GIAARLAPSLPAQQQQQQQQQGQPRRRGGR"
     gene            6139..6444
                     /gene="xseB"
                     /locus_tag="VD968_01450"
     CDS             6139..6444
                     /gene="xseB"
                     /locus_tag="VD968_01450"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HYE13087.1"
                     /translation="MPRREQTVKEAAPQTFEAQLASLESIVRELEHGDLPLERSLELF
                     EQGVRLSRECQERLNEAERRIEVLLRGGDGSTLAVPFEADEFGVGAEDDTEDDESVF"
     gene            6425..>7180
                     /locus_tag="VD968_01455"
     CDS             6425..>7180
                     /locus_tag="VD968_01455"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF045485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004337 - geranyltranstransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="farnesyl diphosphate synthase"
                     /protein_id="HYE13088.1"
                     /translation="MMRASSEGRAADASLDEARAFLARVRSAVEAELGALVPPESAEP
                     RAVHAAIRWSLFAPAKRLRPALVFAAGETFGAQPAALTRTACAFEMIHTYSLIHDDLP
                     AMDDDDLRRGRPTCHVKFGEATAILAGDALQALAFRAIAEDERLDAARRVALVAELAR
                     SAGTPEGMVAGQALDLAAEAREGVTTGELELIHRRKTGALIRSAARAGALVAGASARQ
                     LECVTRYAEELGLLFQITDDLLDVTASAEDLGKT"
BASE COUNT         1136 a         2594 c         2471 g          979 t
ORIGIN      
        1 cgggctccga ctcgtcgaga cccatgcgct tcatcaggcc gagaatcctc tcgccgccga
       61 agcgcgagaa gagagggtct gtcagcgcgg cgtggaaggt cacgcgcgcg gcgcagggga
      121 gcgcgcgcac ggcctctacg acggcgcggt ccctcgaagc cagagggtgg tgctcagcca
      181 cgatggtgcg caggcgctcg gggccgccgg ccgccgccga tgcgtgcgac tccggcttcc
      241 tcatgtgggc cgcgagcgcg agccagaccg aagcacccgc cccgcacagc gacgacggtt
      301 caagagacga gcccgagcgg tgctctatcc cgcgctcgcg caaggcggcc gccgcggccg
      361 agagcgttcc ctcgaaatgc gcgacgacga ggacgttcag ccccgcgcgc ctcgcctcct
      421 cggcctcgcg gcagacgccg tcgagcttcc gccctgcgtc ggcccagacc acctcttcgt
      481 aactttcgcg cgccattgcc ccttcaggat accaccgccc gaggcgccac ttctgctaag
      541 atagcgccgc cgcggcctcg gtcgggccgc gcgctttcta aagactttct tcaaacgccg
      601 gagacttacg gggatgcccc ttgaatccaa cagcgccgcg agcgtctctc ccgcgctcgt
      661 cttcgagctg gataacggca gcagcttcac cttcaacttc cagatggacg ggcgcgttac
      721 cgtcataggc ttccaggacg gccgcgtcgt aacgggctcg ctcgaagacg agcaggtcga
      781 ggagctgcgc gaggccctca acgagtacgt cacgaagaga aaggggtgac ggcgcggccg
      841 gccccgcttc ccttgaccct cgcgcctgag cggggcaaga tcaacgcgta tgttttacag
      901 agcccccgcc gcacgcagca agacctcccc gacactcctg atcgcgctgc tcgcaggcgc
      961 gttcctctat gcccccgccg aagcgcgcgc gcagcaggac ttcgagcgcg acatagacgc
     1021 ctcggggcag gtcgagcttc gcgtcaagaa ccggctgggc cgggtgaccg tgctcgccga
     1081 ggacgaccgc agtcaggtct ccgtgcgcgc ggcctctgcg gggcagcccg tgggcgagcg
     1141 cgacgtgcgc gtcgagacgg gcacgggctc cgtcacgatt gacgttgagc gcgagtcggc
     1201 gcgcaagcgc gacgcggcct ccgacgggcg caaggtacag ctcagccccg cgcagatcga
     1261 gcgcgagcgc atagacgtga cggtgcgcgt gcccgcgcgc tcgcgcgtcg tcgtagagac
     1321 cgaggccggg gcggtggacg tggtcgggaa cgtctccgag gccgaggtca ggacagacac
     1381 cggcaccatc cgggccgacg tgccgctcga cgcgctgcgc tacagcttcc gatggagttt
     1441 gagccgaccg cgcttcttca gcgaggtgga gcttccgaag gtgaagcagc cgcgcggcgg
     1501 cggctatgaa atctccgggc gcttcggcga caacaagaag gcgaagaagg aggagcgcgt
     1561 ccggctcgat ttggagacgg cgcgcggcgt actcctcttc ggcgtcaagg acgagtcgcg
     1621 cgtcccctca gacctccgcg agcgcgagct gaccgaggcc gcgcgcgccg tcatacgcag
     1681 cggcgacgtg gagctgattg acgcgatacg gaaggccgcg ccccgcctcg tcggcgagta
     1741 cgccgccacg ctcccgccgc gcgagggcga gcccgtgctc ggcacgcgcg ccgcgaaccc
     1801 cttcgacgtg aagacccctg ccggcgccgg cctcgcgcgc gtgcaggcgc gcgtgacaga
     1861 ccgcacgggc cgcgccatca gcggccttac ggccaaagac ttcaccgtca cggaggacgg
     1921 gcaggcgcgc gaggtgcgag aggtcactcc ggccacggcg cctttcaacc tcgtgctgct
     1981 cctggacgtt tcgggcagcg tcgaggagcg gctcgacttc atccgaaagg ccgcgctcgc
     2041 cttcgtcaac accatcggcc cgcaggatcg cgtcgcggtg gtgagcttcc gcgacgacgt
     2101 gcagctaatc tccgagttta cgaccgaccg ccagctactc gcgcagagga taaagcgcat
     2161 acaggcgggc ggggccaccg cgctctacga cgcgctcgcc tactcgctcg tccacacgct
     2221 gaagcccctg cgcggcgagc gcacgggcat cgtcgtcctc tcggacggcg acgacaaccg
     2281 ctcgttcgtc acgctccccg cgatactcga ggccgtgctc gaatcgggcg cgataatcta
     2341 cccgctctac gtgccttcgg ggctcatacc cgcctcgggc gctccgcagc ccgtcacgac
     2401 actcgacccg atgcgcacga gatacctgac cctgacctcg cgcgccggcg aggaggggcg
     2461 caagctcgca gagctttcgg gcggcacctt ctaccccgtc acgcgcgtcg agcagttgca
     2521 gcaggcatac gacgacgtgg ccgcgcagct tcgcacggcc tacacgataa cttacgagtc
     2581 ggccgccggg tcgcggcccg gcgcgcgcgt gcgcgtgcgg gtcgcgcgtg agggcgcctc
     2641 cgttcgtctg tcgccggcag tgggcgtcgc cgagggcgcg gccgcgcgcc cctccccctg
     2701 aagccgttcg gaggaagagg agttttaaag ggcaaggggg agagagatgt tcgagccgag
     2761 attgaaaagg cgggcgccga gggtgaagac gcggacagct tctctcctgg cgctcgcctt
     2821 ccttcttctg cccttccact ccgccccggc cggcctcgcg cggcaggagc ctccggctgc
     2881 cccggcgccc acccagacgc cgacaccaac gccttcgcct tcgcctactc ccgccccgac
     2941 tcccgacgag gcggacgatg tcgagcgcat caacacagac ctcacgaacg ttctactgag
     3001 cgcgaccgac tcgaagcgcc gcttcgtcac gacccttaag gccgaagact tgcgcgtttt
     3061 ggaagacggc gtcgagcagc gcctcatctc cttccagcag gagacggacg cgccgctcgc
     3121 gctcgccgtc ctcgttgaca cgagcgcctc gcaggccggc gtgctccgcg acgagcagga
     3181 ggccgcccgc gccttcttcg cctcagtcct gcgccccggc aaggacacgg gcgcggtcgt
     3241 ctccttcacg ggcatcaccc gcgtcgagca gccgccgacg ggcgagcgcg aacggctcaa
     3301 cgccgccatt gacgccacca aagtcctcta ccccgtcaac agccccgagt gcgaggacga
     3361 agacacgccc gaggaggtgc gtgtgcgctg ccagacggcc gtctgggacg ccatagccat
     3421 cacctccggc gaggtgctct cacgcacgcc cgagacggcc cgccgcgcaa tcgtcctgct
     3481 ctcggacggc gacgactaca gcagcaagct caccatctat caatcggtcg agcacgccgc
     3541 ccgcaacaac gtcgtcgtct attcaatcgg catacgcgac cgcgacgtgg gcgtcggcga
     3601 cctgaggaag gataacctgc gccgcgtgtc ggaggagacg ggcgggcgcg ccttcttccc
     3661 caaaaacagg gcggagctcg actccgcctt cgcgcaggta gagcgcgagc tgcgctctca
     3721 gtacctcctc tcctactcgc ccaccaacaa ggcgcgcgac ggccgctacc gccgcgtcac
     3781 ggtcgagata gtcaaccccg cccttcgcaa acagaagctc cggctcctct accgccgcgg
     3841 ctactacgcc cgcggcggcg agaggcccgc gcccgccgcg acgaacgacg actgaagggc
     3901 gtcccgcccg gctcgtcgtt ccgcccccgc ggcctcttct ggtatccttc accccgagtt
     3961 atgacccggc cccttctaat gtcgctcttc gacgaagccg agcgccggcc gctcaccgtg
     4021 tcggagctga cctcgcaggt gcgcggcacc ctggagaacc gcttctccgc cgtctgggtc
     4081 gagggcgaaa tctcgaactt caaggccgcg ccctccggcc actggtactt caccatcaag
     4141 gacgagggcg cgcaggtgag ggccgcctgc ttccgcggca tcaactcgcg catacgcttc
     4201 cggccctcgg acgggctgct cgtccgcgtg cgcggccgcc tcacggtcta tgagccgcgc
     4261 ggcgactacg agctgatggt cgaggcgcta gaccccgtcg gcgccggcgc cctgcgcgtc
     4321 gccttcgagc agttgaagga gcgcttagcg gccgagggcc tcttcgacga agagctcaag
     4381 cgcgagctgc ccatcctccc gcgccgcata ggcgtcgtca cttcccccgc gggcgcggcc
     4441 gtccgcgaca tcatccgaac tatagagcgg cgcacgcgca ccgtgagcat cctcgtcgcc
     4501 ccggcgcgcg tgcagggcga gggcgccggg cgtgagatcg cgcgcgcgct cgcggcactg
     4561 aacgagcacc acctgcgcgc cgtcgcgcag gggcgcgtgg aagagcaact ggacgccgtc
     4621 atcgtcgggc gcggtggcgg cgcggccgaa gacctttggg ccttcaacga cgaggagctt
     4681 gcccgtgcca tacgcgcctc cgccctgccc gtgatttcgg ccgtgggcca tgagacggac
     4741 ttcaccatcg cggacttcgc ggccgacgtg cgcgcggcga cgccgacggc cgccgccgag
     4801 ctggtagccg agcgcgagga cgagattgcc gactacgtcg agtcgctcac gcacaacctg
     4861 gtgaactccg tccgctaccg cgtcataagc gagagggcgc gcgcgcagga gctcgcgatg
     4921 tcgcacggct ttgacgaggt gcgctcgcgc ctgcgcgcgg cgcgctcgga ggcagactcg
     4981 gcggcgctca ggctcgaaag gcttttgaag gaaagggcgg cgcgcacgcg ccgaaggctc
     5041 gacgacgccg cttgccgtct ctcgccagcg gggatggcgg cgcgcgcggc gggcgcgcgc
     5101 gtgcggctcg cgctcgcggg cgcggggctg gaggccgcgg cgcgggcgcg gcaggacgac
     5161 gcgcggggcc gcctcgccgt cgccgccgcc tcgctcgacg cgctctcgcc gctcgccgtg
     5221 ctgggccggg gctacgcgct cgccgaggac gagcgcggcg agatactccg caagtcttcg
     5281 gccgcgcgag agggcgagcg cgtgagggtt cggctcgccg agggcgcgct ccgctgccgc
     5341 gtcgaggaag tcgaggggga gacctaagcg atgtcgcatc cgacgcaggg gcgcgggggc
     5401 cgaaagagcc gcatcgtcat tgacgttacg aaggcgcagg ccgaggcgca ggcgcgccgc
     5461 gcgcgcgggc gcggccgggg ccgtcgaata ctttcggttg cggcgctcgt cgtgctcggc
     5521 gtcgtgctgc tcgccttcgc gggcggctac ttctggtggc agagctacaa gaaggggccg
     5581 gcctacagcc tcgccctcat ggttgacgcg gcgcggcgcg acgacatgca ggcggtcgag
     5641 tcgctcatag acagcgacac gatagcgcag ggtttcatcc cgcaggtgat agagaggctg
     5701 acggggccta acgcgccgcc gctcacgccg caggcgcgcg cctcggtggc gacggccctg
     5761 ccgcagctca taccgcgcgt gcgcgagacc gcccgcgagg aggtcgccgc gatggcgaag
     5821 tcggccgcgg ggcctctgcg cacgggcgca aacctcccgt tcccactctt cgcggtcgcg
     5881 ctctcccgcg ccgtcaacat caaggaggag ggagacaccg cggtcgtcac aatccccggt
     5941 gttgacgcga gctcggagat gaccatgcgc cgcgacggcg agcgctggaa agtcataaac
     6001 gtcagggacg agcagctcgc ggccggcatc gccgccaggc tcgcgccgag ccttcccgcg
     6061 cagcagcagc aacaacagca gcagcagggc cagccgcgcc gcaggggcgg ccgctaactg
     6121 aaactcacgg acgagagaat gccgagacga gaacagacag tcaaagaagc ggcgccgcag
     6181 accttcgagg cgcaactcgc gtcgctcgaa agcatcgtgc gcgagttaga gcacggcgac
     6241 ctgcctctgg agcgcagcct ggagcttttc gagcagggcg tgcggctctc gcgcgagtgc
     6301 caggagcgac tgaacgaggc cgagcgccgc atcgaagtcc tgctgcgcgg cggcgacggc
     6361 tcgacactag ccgtcccgtt cgaggccgat gagttcggcg tcggcgcgga agacgacacg
     6421 gaagatgatg agagcgtctt ctgaaggccg cgcggccgac gcctcactcg acgaggcgcg
     6481 cgcctttctc gctcgcgtgc gctcggcggt cgaggccgag ctgggcgccc ttgtgccgcc
     6541 cgagagcgcg gagccgcgcg ccgtccacgc ggcgattcgc tggagcctct tcgcgccggc
     6601 caagcgcctg cggccggcgc tcgtcttcgc cgcgggcgag accttcgggg cgcagcccgc
     6661 cgcgctcacc cgcacggcct gcgccttcga gatgatccac acctactcgc tcatacacga
     6721 cgacctgccg gcgatggacg acgacgacct gcggcgcggg cgccccacct gccacgtcaa
     6781 gttcggcgag gcgacggcca tactcgcggg cgacgccctc caggcactcg ccttccgggc
     6841 catagccgag gacgaaaggc tcgacgccgc gcgtcgcgtc gcgctcgtcg ctgagcttgc
     6901 gcgctcggcc ggcacccccg aggggatggt cgcggggcag gcgctcgacc tcgcggcgga
     6961 ggcgcgcgag ggcgtgacga caggcgagct tgagttgata caccggcgca agacgggcgc
     7021 gctgatacgc tcggcggcgc gggccggcgc gcttgtggcg ggcgcgagcg cgcggcagct
     7081 cgaatgcgtc acgcgctacg cagaagagct ggggctgctc ttccagataa ccgacgacct
     7141 gttggacgtc accgcctcgg ccgaagacct cggcaagacg
//
LOCUS       DASPKR010000050         6236 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_5737, whole genome shotgun sequence.
ACCESSION   DASPKR010000050 DASPKR010000000
VERSION     DASPKR010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6236)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6236
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5737"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1298
                     /locus_tag="VD968_01460"
     CDS             <1..1298
                     /locus_tag="VD968_01460"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HYE13089.1"
                     /translation="TGKQYEVPIADGTIRAIDLRQIKTGDDDFGLMTYDPAFMNTASC
                     KSTITYIDGDRGILEYRGYPIEQLAEHSTYLEVAYLLLYGELPTAEQLRQWTWNITHH
                     TFINENIKKVLDGFHYNAHPMGMFEAMVAALSTFYPEAKNVKDPACRQKQIHRLIAKA
                     PTIAAFAYRHRTGLQYAYPDNDLSYEGNFLNMMFKTTELKYKPNPVLERALSVLFILH
                     ADHEQNCSTSTMRTIGSAETDPYSSLAGAAAALYGPLHGGANEAVLRMLNEIGSVERV
                     PEYVKRVKAGEFRLMGFGHRVYKNYDPRARIIKQVAYEVFEVTGKDPLLDLALELERI
                     ALEDEYFVKRRLYPNVDFYSGIIYRAMRFPVDMFPVLFAIPRTSGWLAQWVEMLDDPE
                     QKIARPRQIYLGARTRDYVPLEKRGGAGAAAESATSAAG"
     gene            1441..1665
                     /locus_tag="VD968_01465"
     CDS             1441..1665
                     /locus_tag="VD968_01465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13090.1"
                     /translation="MLNNKQVRVIKRGERAGTIEAASRVVPAGGGAATEREIKTVVSG
                     WVSEHRRRAEEFRQTYTSLLKGAGFTPARG"
     gene            1857..1985
                     /locus_tag="VD968_01470"
     CDS             1857..1985
                     /locus_tag="VD968_01470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13091.1"
                     /translation="MSSTTGAASPPASVFIGAGQVKATLGSATVGRELSVTAGACP"
     gene            2083..2862
                     /locus_tag="VD968_01475"
     CDS             2083..2862
                     /locus_tag="VD968_01475"
                     /inference="COORDINATES: protein motif:HMM:NF013786.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HYE13092.1"
                     /translation="MATTDDQPFRNPEPCSYALAEDDVHVWRVPTDVAGSEVEALSGL
                     LSREERDRAARFRFKRDGDRFTVSRGRLRMLLSLYTGLEAGRIEFLTNEFGKPSLGGD
                     AARAGLRFNAAHSHELALYAFARWREVGVDVERVREDFDCEAVAANFFAPGEVEALRA
                     PSARRGARAFFDCWTRKEAYVKARGEGLSRPLDSSEVSLEPGAAASLLRAGGDAVEAA
                     RWALFDLDAGEGYAAALVVEGRGSRLECRRWPGSGATADLA"
     gene            2891..4804
                     /locus_tag="VD968_01480"
     CDS             2891..4804
                     /locus_tag="VD968_01480"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HYE13093.1"
                     /translation="MWGRGESGVTWCLHELFEAQAARTPEAVALASEEDELTYAELAA
                     LSSNIARQLRSLGVGPETPVGVLSGRSAGTIAALLGVLKAGGAYVPLSTSSPPQWVAF
                     MLEDIGVPVLLTERELADRLPSTYARVVILEELAATAGAEGRESPEPCVWPDNLAYVI
                     YTSGSTGTPKGVGVPHRAVCNQALWSRETFSLGEGDAVLQTAPLSSDVSVWEVFAALT
                     SGARLVLAPRGAEQDPGRLVEVVREQGVTTMYVAPPLLRAMLEAGGLERCRGLRRVLC
                     GGDVLSPELSQRFFSSLPEAELYNVYGPAETTVHATFWRCERGSARRSVPIGRPIANA
                     QTYVLDRRTRVQPVGLKGELYIGGAGLARGYLGRPDLTAEMFVPDPFSAEPGARLYRS
                     GDMARWLPEGALEFSGRRDRQVKVRGFRIELGEIEAALGSHPCVGAAVVLAREDVAGD
                     VRLVAYLVESGMVTRQELRGFLRERLPEHMIPSAFVTLEALPLRPDGKVDRRALPEPG
                     LSEAETARALSAQSYVEPRTDVEHLVASIWAELLGLERVGAEDNFFELGGDSILATRL
                     VSRLREAVGVGLSLRALFEAQTVEGMARAVEAELRGGAEGGKLARVLEETEMLSDEEV
                     NDLLNRESGEGGR"
     gene            4801..>6236
                     /locus_tag="VD968_01485"
     CDS             4801..>6236
                     /locus_tag="VD968_01485"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HYE13094.1"
                     /translation="MSDLKDRLSHLSPEERRLLELRLSERAGDGRQSIEKRGGEGYAF
                     PLSFAQQRLWFLEQLEPGGAAYNMPAALRLSGALDVEALRRALREIVRRHEVLRTTFT
                     VVDGQPMQLIHEPPELPLEVVEAGALAEEQVEEMLRGEALRPFDLAGGPLARFVLLRL
                     SREEHLLLLTLHHIISDGWSMGVLAHELSALYAAYAGWEVSPLPELPVQYADYALWQR
                     EWLRGEVLERELEYWRRTLADLPPPLELPADRPRPAVPGNAGALERFELPRELSESLK
                     ALSRQEGMTLFMTLLAAFQALLSRYTDREDILVGTAIANRARTEVEPLIGFFVNTLVL
                     RTDLSGDPSFRELLRRVRAATLGAYAHQEVPFERLVEELQPERELGRAPFSQVMFNLQ
                     NDPAAELDLPGLKVTRLPLVTGLTNSDLTLNMTEATGALKGEFEYSTELFDAETIRRM
                     VGVRRAVLPQDLWQRRFLHGGVPVRQARR"
BASE COUNT         1031 a         2073 c         2141 g          991 t
ORIGIN      
        1 ggactggcaa gcagtacgaa gtccccatcg ccgacggcac catacgcgcc attgaccttc
       61 ggcagataaa gaccggcgac gacgacttcg ggctgatgac ctacgacccg gcgttcatga
      121 acacggcgtc gtgcaagagc acgatcacct acattgacgg cgaccgcggg atcctggagt
      181 accgcggcta ccccatcgag cagctcgccg agcatagcac ctacctcgag gtcgcttacc
      241 tgctcctata cggcgagctg cccaccgcag agcagctccg ccagtggact tggaacatca
      301 cgcaccacac cttcatcaac gagaacatca agaaggttct ggacggcttc cactacaacg
      361 cacacccgat gggcatgttc gaggcgatgg tggccgcgct ctcgaccttc taccccgagg
      421 ccaagaacgt caaagacccg gcctgccggc agaagcagat tcaccgcctg atagcgaagg
      481 cgccgaccat cgccgccttc gcctaccgcc accgcaccgg cttgcagtac gcctaccccg
      541 acaacgacct ctcctacgag ggcaacttcc tgaacatgat gttcaagacg acggagctga
      601 agtacaagcc gaaccccgtg ctcgagcgcg ctctctccgt cctcttcata ctgcacgccg
      661 accacgagca gaactgctcg acgagcacga tgcgcacaat cggctcggcc gagaccgacc
      721 cgtactcgag cctcgcgggc gcggccgccg cgctctacgg cccgctgcac ggcggggcga
      781 acgaggccgt gctcaggatg ctcaacgaga taggctcggt cgagcgcgtc cccgagtacg
      841 tcaagcgcgt caaggccggc gagttccggc tgatgggctt cggccaccgc gtctataaga
      901 actacgaccc tcgcgcgcgc ataatcaagc aggtcgcata cgaggtcttc gaggtgacgg
      961 gcaaagaccc gctactagac ctcgcgctgg aactggagcg catcgcgctc gaggacgagt
     1021 atttcgtcaa gcgccgcctc tacccgaacg ttgacttcta ctccggcatc atctaccgcg
     1081 ccatgcgctt ccccgtggac atgttcccgg tgctcttcgc cataccgcgc acgtcggggt
     1141 ggctggcgca gtgggtcgag atgctcgacg accccgagca gaagatcgcg cgaccgcgac
     1201 agatttacct cggcgcgcgc acgcgcgact acgtgccgct cgaaaagcgg ggcggcgccg
     1261 gcgcggcggc cgagtcggcc acgtcggcgg ccggctgagc gccgtaagga attaccaggg
     1321 atgggcgggg cgcacaggat gaagaaattg tctttatcct gtccgccccg cccttttttt
     1381 acggccgggg tgattctttt tcgccgcgcc tcccgcgtta gatgacggga gggcaaggaa
     1441 atgcttaaca acaagcaggt gagggttatc aagcgcggcg agcgcgccgg cacaattgag
     1501 gcggcttcaa gggtcgtccc cgcggggggc ggggcggcga ccgagcgtga gataaagacg
     1561 gtcgtctcgg gctgggtcag cgagcaccgc cgccgcgccg aagagttccg acagacctac
     1621 acctccctgc tcaagggcgc aggcttcacc cccgcccgcg gctgaaggcg ccacggacag
     1681 attgacgaac tgccacgaaa agctccggcc ccaccgccgg ggctttttct attcccgaga
     1741 gaaatcggga cggcctgccc acccaacacg aaggctgcgg gcgccctcgt caacgcccgc
     1801 ggcatttact ttcccccggc ccgaaacgtt cgccggccgg cggggtgacc gcagagatgt
     1861 cgagcacgac gggggcggct agcccgccgg ccagtgtctt cataggggcg gggcaggtga
     1921 aggcgacgct cgggagtgcg accgtcggca gggagctgtc ggtgacggcg ggggcctgcc
     1981 cttgagcgga gggcggaggc ggtagagtag cgccgccgcc cccgcctttg tatcatcgtc
     2041 caaaactcct cttgcttaag gagccgaggc ggcggatacc gaatggcgac taccgacgac
     2101 cagcccttcc gaaatcctga gccgtgctct tacgcgctcg ccgaagacga cgtgcacgtc
     2161 tggcgcgtgc cgactgatgt cgcgggctcg gaggttgaag ccctgtccgg gctcctctcg
     2221 cgcgaggagc gcgaccgcgc cgcgaggttt cgcttcaaga gagacggcga caggttcacc
     2281 gtctcgcgcg gcaggctgag aatgctcctt agcctttaca cggggctcga ggccgggcgc
     2341 atagagttcc tcacgaacga gttcggcaag ccctcgctcg gcggcgacgc ggcccgcgcg
     2401 ggccttcgct tcaacgcagc ccactcgcac gagctcgccc tctacgcctt cgcgcgctgg
     2461 cgcgaggtcg gcgttgacgt agagcgcgtg cgcgaagatt tcgattgcga ggcggtggcg
     2521 gcgaacttct tcgcgcccgg cgaggtagag gcgctgcgcg cgccctccgc tcggcgggga
     2581 gcgcgcgcct tcttcgactg ctggacgcgc aaagaggcct acgtcaaagc gaggggcgag
     2641 gggctttcgc gccctttaga ctcctccgag gtgtcgctcg aaccgggcgc cgcggcgtcg
     2701 ctgctgcgcg cgggaggcga cgccgtagag gccgcgcgtt gggcgctgtt cgatctcgac
     2761 gcgggtgaag ggtacgcggc ggcgctcgtc gtcgagggcc ggggctcccg gctagaatgc
     2821 aggcggtggc cgggctcggg cgcgacggcc gacctggcat aaagttagtt caaggttctg
     2881 gaggcgtcgg atgtggggaa ggggcgagag cggggtgaca tggtgcctgc acgagctgtt
     2941 cgaggcgcag gcggcgcgca cgcccgaggc cgtggcttta gcgtcggaag aggacgagct
     3001 gacttacgcg gagctggccg cgctgtccag caacatcgcg cgccaactgc gctctctggg
     3061 cgtggggcct gagacgcccg tcggcgtctt gtcggggcgc tcggccggca cgatagcggc
     3121 cctcctcggc gtcctcaagg cgggcggcgc ttacgtgccc ttgagcactt cgagcccgcc
     3181 gcagtgggtc gccttcatgc tcgaggacat aggtgtgccg gtcttgctca ccgagagaga
     3241 gctggccgac agactgccct ccacctacgc gcgggtcgtc atcttagaag aactggcggc
     3301 gacggccggg gcggagggcc gagagagccc ggagccgtgc gtgtggcctg acaacctggc
     3361 ctacgtcatc tacacttccg gctctaccgg cacgccgaag ggcgtgggag tgccacaccg
     3421 cgccgtctgc aaccaggcgc tctggtcgcg cgaaaccttt tcgctgggcg aaggcgacgc
     3481 cgtgcttcag acggctccgc tcagctccga cgtatccgtc tgggaggtct tcgccgcgct
     3541 cacatcgggg gcgcgcctcg tactggcgcc gcgcggggcc gagcaagacc ccggccgtct
     3601 ggtggaggtc gtccgcgagc agggcgtgac taccatgtac gtggcgcctc cgctcctccg
     3661 agccatgctg gaagcaggcg ggctggagcg ctgccgtggc ctccgtaggg tcttgtgcgg
     3721 cggagacgtg ctctcgcccg agctttcgca gcgcttcttc tcgtcgctgc ccgaagcgga
     3781 gctgtacaac gtgtacgggc cggcggagac gaccgtgcac gcgacctttt ggaggtgcga
     3841 gcggggctcg gcgcggcggt cggttcccat cgggcgcccc atcgcaaacg cccagaccta
     3901 cgtgctcgac cggcgcacgc gcgtgcagcc cgtcggcctg aagggcgagc tgtacatagg
     3961 cggcgcgggg ctggcgcgcg gctacctcgg ccggcccgac cttaccgccg agatgttcgt
     4021 ccccgaccct ttcagcgccg agcccggcgc ccgcctctac cgcagcggcg acatggcgcg
     4081 ctggctgccc gagggcgcgc tcgaattctc cgggcgccgc gaccgtcagg tgaaggtgcg
     4141 tggcttccgc atcgagctcg gcgagataga ggccgcgctc ggctcgcacc cctgcgttgg
     4201 cgcggcggtc gtgctggcgc gcgaggacgt agcgggcgac gtaaggctcg ttgcctatct
     4261 ggtggaatcg gggatggtga cgaggcagga gcttcgcggc ttcctgaggg agcgcctgcc
     4321 tgagcacatg atcccttcgg ccttcgtcac gctcgaagcg ttgcccctga ggcccgacgg
     4381 caaggtggac aggcgcgcgc tgcccgagcc tggtctctcg gaggcggaga cggcccgcgc
     4441 cctgtccgcg cagtcatacg tcgagccccg gacggatgtg gagcatctgg tggcgtcaat
     4501 ctgggcggaa ctgctcgggc ttgagagggt cggcgccgag gacaacttct tcgagctggg
     4561 aggggactcg atcctcgcga cccggctcgt gtcgcgcctg cgcgaggcag tcggcgtcgg
     4621 gctgtcactc cgcgccctct tcgaggcgca gacggtcgag ggtatggcgc gggccgtcga
     4681 ggcggaactc cggggagggg cggaaggcgg aaagctcgcg cgggtcttag aggagacaga
     4741 gatgctttcc gacgaagagg tgaacgacct gttgaataga gaatcgggag aaggcggcag
     4801 atgagcgacc tcaaagaccg gctatcgcat ctttcgccgg aggagcggcg gctgctcgag
     4861 ctcaggctct cggagcgggc tggcgacggg cggcagtcca tcgagaagcg tggcggggag
     4921 ggatacgcct tccctctctc cttcgcgcag cagcggctct ggttcctcga acaactagag
     4981 ccgggcggcg ccgcgtacaa catgccggcg gccctgcgcc tgtcgggcgc gctcgacgta
     5041 gaggcgctgc ggcgcgccct ccgagagata gtcaggcggc acgaggtgct gcggactacc
     5101 ttcacggtgg ttgacggcca gcccatgcaa ctcatccacg agccgccgga actccctctg
     5161 gaagtagtag aagccggcgc gctggcagag gagcaggtcg aggagatgct acgcggggag
     5221 gcgctgcgcc ccttcgacct cgcggggggg ccgctcgcca ggttcgtgct gctgcggttg
     5281 agccgagagg aacatcttct gctcctgacg ctccaccaca tcataagtga cggctggtct
     5341 atgggcgtgc tcgcacacga gctgtcggcg ctctacgcgg cctacgccgg ctgggaggtc
     5401 tcgccgctgc cggagctgcc cgtccagtac gcggactacg ccctctggca gcgcgagtgg
     5461 ctccggggcg aagtcttgga gagggagctc gaatattgga ggcgcacgct ggccgacttg
     5521 cccccgccgc ttgagctgcc cgcagaccgc ccgcgcccgg cagtccccgg caacgccggc
     5581 gcgctcgaac gcttcgagtt accgcgcgag ttatcggaga gcctcaaggc gctcagccgg
     5641 caggagggca tgacgctctt catgacgctg ctcgcggcct tccaagccct cctctcccgc
     5701 tacacagacc gagaggacat tctggtcggc acggccatag ccaaccgcgc ccgcacggag
     5761 gtcgagcctc tcataggctt cttcgtcaac acgctcgtcc tgcgcacaga cctctccggc
     5821 gacccgtcct tccgcgaact gctgaggcgc gtgcgcgcgg cgaccctcgg cgcttacgcc
     5881 catcaggaag tgcctttcga gaggctggtc gaagagctac agcccgagag ggagttgggc
     5941 cgcgcgccct tctcccaggt gatgttcaac ctacagaacg acccggccgc ggagcttgac
     6001 ctgccggggc tcaaggtcac gcgccttccg ctcgtcacgg gcctgaccaa ctccgacctc
     6061 acgctgaaca tgacggaagc gacgggcgcg ctcaagggcg agttcgagta cagcacggag
     6121 ctcttcgacg ccgagacaat ccggcgcatg gtcggcgttc gacgagcagt ccttcctcag
     6181 gacctatggc agcgtcgatt tcttcatggc ggtgtacctg ttcggcaagc tcgccg
//
LOCUS       DASPKR010000051        10745 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_653189, whole genome shotgun sequence.
ACCESSION   DASPKR010000051 DASPKR010000000
VERSION     DASPKR010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10745)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10745
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_653189"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VD968_01490"
     CDS             <1..454
                     /locus_tag="VD968_01490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13095.1"
                     /translation="YVGAAVAGLVLLVVVVGGAGLFLLSGAKNKPAEPVQPTALTEEP
                     ARPSAPAEQPAAPPQTAAGDQTTPPATDDDDAAGTQAPAQVPAPSLKPSGTAPVLPAP
                     PATADTRQGGAQRPAAPRPAAPAQRQRPQAPASDAAARRRRALEALDQ"
     gene            530..1708
                     /locus_tag="VD968_01495"
     CDS             530..1708
                     /locus_tag="VD968_01495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13096.1"
                     /translation="MGFPKVKMNLTAWGARRAPLPSLLLAAALVTLFFPAHAAAQAKK
                     PISKDGLIKAVQINGLSTAELVEQIGQRGVNFQMTPAVEQEMRQAGAREEVIAAARSN
                     YRPGATTASSASTGRGAKPGAAAAVPKGAPLSRAEVVTMLEAGSPPARVEQFVEARGV
                     NFQLNAQATREIKAAGGTNSLVGAIAANYVAPGAPPRGRPAGTPAVNTTAARGPDYDD
                     LTDQATSAYAAKNAALATELLQRAIQLNSSHPRAYQLLGFTQLYLRGDLAGAEQNMRR
                     AIELGGSAAFRVFHDHAEGSFKQTCSGTLFVTKTNVTFKADDGRDTFEALDRDIKEIK
                     TNKFVGANPFGALLGGKGDVGAFHVKTTRNYNFAPLTEKKKESELIIKLVKEYGGVKG
                     "
     gene            1739..2881
                     /locus_tag="VD968_01500"
     CDS             1739..2881
                     /locus_tag="VD968_01500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13097.1"
                     /translation="MKLNTTIRQSKLFALALAAAAAAALLLAAPSSAQSNKPISRKGL
                     VESVKANGLSTVELVRIINRRGVAFEMTPDAEAELRSVGARPEVIEAARSNYRDPAPA
                     TPAVASRPTTNRPANVPSSGSSAPVPPGPPLSKNEIITMLQGGIAPARVEQFVEARGV
                     SFSVTPEVAREITAAGGNRSLVGAITEKATAETASSSSPFGADSGEAANSGAPTYDDY
                     IDRAQTAISAQDWSSAINYAQQAAQLDPQQPTAFTLLGTMLLYASRNVGGAEQAMSAA
                     IQRGGAAAFKVYHDHTGSFSQYCQGSFFVTKTGVSFKADDGLDTFETEDSNIKEAKTN
                     AWVGSEYGAFHIKPVQKINGRDNFNFAPATQQKAEAELILRMIRNF"
     gene            2937..4634
                     /locus_tag="VD968_01505"
     CDS             2937..4634
                     /locus_tag="VD968_01505"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13098.1"
                     /translation="MKRTTRLLVTLAAVIFLLNAPAPAAALPQKQQEADKQAAAGAAQ
                     LQRGNWRGAADSFRKALRANPNHVEASYGLGVAQMNLKQYQDALGAFSKVIELKPNAR
                     VQDALRGSGLIFFDQQRYKEVTDVFEHAKQWGQLTPSDYYFLGKSYAHMNRAAEALAA
                     MKLAAPPPQQFAHDAYFTLGFLLLTQNEAREAAAPLEQAAQLQPNHAPTLMLLGNAYL
                     VREKFQDAHDVLRRAASIDPNQFFTHYGLGYALMNLNRAEEAVGSFTAAMRLQPQSPE
                     AHVGMGNARLRLNQFKEAQGSFEQALRLKPDSADALLGMCVVYYSQGDYPALLDASEQ
                     AVRLAPSYANAHTMRGAALATVGQMREGLAAVRRAAQLEPENYWPHHVIAFIHVREDR
                     PQEALPEARRGVSLKPEYPETQNLLSYVLNQLGQHQEALTAAQAALRLKREPADEGWA
                     HYNIATALEKLNRREEALAAYRQSVAAYNQVGRTLDPDDLYLMGNAYLRLDQDRQAIM
                     AFRQSIRVRPSFAQARYNLGVAYFAAGDRKSAMAEYNELKRLDAAKAARLLKVIGGR"
     gene            4823..5347
                     /locus_tag="VD968_01510"
     CDS             4823..5347
                     /locus_tag="VD968_01510"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HYE13099.1"
                     /translation="MTRKQKAHIEFTLNGEPVEVAFAPHKTLLEVLREDLGLTGTKHG
                     CELGECGTCAVLVDGRSALSCLVLGLEAEGRRVETVEGMATPDGLHPLQETFADTGAA
                     QCGYCTPGFLLVAKELLAQRPDPTRDEIKEALSGNLCRCTGYIKIYEAVELAAARMRG
                     EEAELPRESVYGYE"
     gene            5334..7775
                     /locus_tag="VD968_01515"
     CDS             5334..7775
                     /locus_tag="VD968_01515"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HYE13100.1"
                     /translation="MATSNGNGRTGGGLNVVGRPFRKVDARSKCVGATKFADDIALPR
                     MLYCKILRSTEPHALIKSIDVSKALSLPGVLACITGEDLPIPYGILPVSQDEHALCVG
                     KVRFVGDPVAAVAAVDEDTAFEAMNLIEVEYERLQSITNIEEGALVDEPRIHDYGDHG
                     NVHKSVHLEFGDLDEGFAEADLIREDAFFYEGNTHLPMEQHAAVAHFDADGKLTLWSS
                     TQTPHYVHKALAKTLQMPAAHVRVIATPNGGGFGGKSDPFNHEIVVSELSRRTKRPVK
                     ITLTREEVFYCHRGRHPVLMKSRIGVKKDGSITALDFQSFLDGGAYGSYGVASTFYTG
                     ALQTVTYEVPRYRFRGMRAFTNKPPCGPKRGHGTPQPRFALEIQLDRVAEELGLDPAE
                     MRLKHLVKPYTVTANYLRIGSMGLGKCIEKVVAGSGWKSKFKQLPYGRGVGLACSSYI
                     CGAGLPIYWNSMPHSGVQLRLDRQGGVCVQCGSTDIGQGSDSVLAYIVAEILGIDPFD
                     IRVVTADTDLTPVDLGSYSSRVTLMTGNAAIQAAERARELLTRAVSEKLGVPVDNLSL
                     ADRRVFDVENPEVGMTFAEAVVLAEQKYGTIGTVGSYVPPRAPGRFKGAGVGPSPAYS
                     YSAAVAEVDVDVDTGFVNVGKIWVAHDIGKSINPMLVMGQVEGSVYMGLGEAIMEEMT
                     YRANRNVVHKFPSMLEYKSPTTLEMCEVFTYLVEDPDPNGPYGAKEVGQGPLLPVMPA
                     IANAVYDAVGVRIDEVPVTPEKVLAALRAKQQGKEPRFGPKGVPSVNWPEPLKVLTPA
                     EGGDGREMPRVAVHS"
     gene            7801..8793
                     /locus_tag="VD968_01520"
     CDS             7801..8793
                     /locus_tag="VD968_01520"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HYE13101.1"
                     /translation="MMRLPKFAYCAPKTVGEAVRLRGEAGPAGQFVAGGTDLYPNMKR
                     RQQTPETVISVGRIHELRRIEGDGKEGLRIGAGVSLTEVVEHPVVNRDYPSVARAARL
                     ISTPTLRNMGTIGGNLLLDTRCNYYDQNYEWRRSINFCMKKDGEVCWVAPGSPKCWAV
                     QSSDLVPLMVAMGARVRLVSTVGDRLVSAAGLYNDDGIDYLHKRPEELLTEIHLPPVD
                     GWRAVYKKLRRRGAFDFPVLGVAAAVRVGDRGEVEEAKVVLGGVAPAPLEVEAAGKAL
                     AGGPLDEGRIRAAAEACYLKARPLDNTDHLMNYRKQMARPFVMRALEELRQSLS"
     gene            8790..9425
                     /locus_tag="VD968_01525"
     CDS             8790..9425
                     /locus_tag="VD968_01525"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HYE13102.1"
                     /translation="MSFGGVAAVLLAAGRSRRMGAFKPLLPFGGVTVVESCVETLQAA
                     GAAETVVVVGHRAEDVRAALAGRGGLRFAVNEDATSEMGASIARGVEALSAATKAALV
                     ALVDHPAVPAAEVRKLVEAWVATGAPLVLPEWEGRGGHPVLVDMRLREELLSLDARGG
                     LRSLFAEHAGEMLRVPAGSPYVVRDMDTWGEYAALYRDVFGTEPPAAGGPA"
     gene            9587..10141
                     /locus_tag="VD968_01530"
     CDS             9587..10141
                     /locus_tag="VD968_01530"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HYE13103.1"
                     /translation="MFKRKPLRAIAAALAFLFALSGAVLVTPARAAAPLVFRLRTADG
                     GEITSEMLRGDVVVLAFGASWLPLSKSQVQKVQELADAYGPRNVRVYWVSTDSVKPQS
                     KNYASDEQLRSFASKNGLKIAVLRDPDGALFKQTGADQLPSIVILDREGEVSGAPIGG
                     LDPDPQRKLTQALSPRLDKLLAGQ"
     gene            complement(10214..>10745)
                     /locus_tag="VD968_01535"
     CDS             complement(10214..>10745)
                     /locus_tag="VD968_01535"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HYE13104.1"
                     /translation="RRAEILRAVGWPFETSPAGVDESLREGEPPEEYVRRLAREKAEA
                     AASSRLFGLVLGADTTVVVDGEILGKPEDEDDARRMLRALAGRWHEVLTGVALVRAES
                     GRAAVGVERTRVRFAEVSEEEIDWHARTGDVLDKAGAYAVQGRAALFIEAIEGDYWNV
                     VGLPVRLVYELARGMR"
BASE COUNT         1883 a         3810 c         3502 g         1550 t
ORIGIN      
        1 ctacgtcggc gcggccgtcg caggcctcgt ccttctcgtc gtggtcgtcg gcggcgcggg
       61 cctcttcctg ctctcgggcg cgaagaacaa gccggcggag cctgtgcagc ccaccgcgct
      121 cacggaagag cctgcgcggc cctcggcacc ggccgagcag cccgcggcgc cgccgcagac
      181 cgcggcgggc gaccagacaa ctccgcccgc cactgacgac gatgacgccg ccggcacgca
      241 agccccggcg caagtccccg cgccttcctt gaagccttcg ggcacggcgc ccgtcctgcc
      301 cgccccgccc gcgacggccg acacgcgaca gggcggcgca cagcgccccg cggccccccg
      361 gcccgcggcg cccgcgcaga ggcagaggcc gcaggccccc gcctcggacg ccgccgcccg
      421 gcgcaggagg gcgctcgaag cgctcgacca gtagcgcccg cctttttgag tctccgggca
      481 aactatgtgg gggcggggta gagccccgcc cccacgctct tcatcaagca tgggattccc
      541 gaaagttaag atgaacctga ccgcgtgggg cgcgcgccgc gctcccctcc cctcgctgct
      601 tctggcggcc gcgcttgtaa cactgttctt cccggcgcac gccgcggcgc aggccaagaa
      661 gcctataagc aaggacggcc tgattaaggc cgtgcagata aacggcctct cgacggccga
      721 gctggtcgag cagatagggc agcgcggcgt caacttccag atgactcccg ccgtcgagca
      781 ggagatgcgg caggccggcg cgcgcgagga ggtcatagcg gccgcgcgct cgaactaccg
      841 ccccggcgcg acgacggcga gctccgcttc gacgggccga ggcgcgaaac ccggcgcggc
      901 cgccgcagtc ccgaaggggg cgccgctctc gcgcgccgag gtcgtgacga tgctggaggc
      961 cgggtcgccc ccggcgcgcg tcgagcagtt cgtagaggcc cgcggcgtca acttccagct
     1021 caacgcgcag gcgacacgcg agattaaagc cgcgggcggc accaactctc tcgtcggcgc
     1081 catcgccgcg aactacgtcg cgcccggcgc gcccccgcgc ggccggcccg ccggaacgcc
     1141 ggccgttaac actacggccg cgcgcggccc cgactacgat gacctgaccg accaggccac
     1201 cagcgcctac gccgcgaaga acgccgcgct cgccaccgag ctgctacagc gcgccataca
     1261 gttgaactcc tcgcacccgc gcgcatacca gcttctcggc ttcacgcagc tctacctccg
     1321 gggcgacctc gcgggggcgg agcagaacat gcgcagggcg atagagctgg gcggctcggc
     1381 cgcgttccgc gtcttccacg accacgcaga aggctcgttc aagcagacct gctctgggac
     1441 gctctttgtc accaagacga acgtcacctt caaggccgac gacggccgcg acaccttcga
     1501 ggcgctcgac cgcgacatca aggagataaa gacgaataag ttcgtcggcg ccaatccctt
     1561 cggcgcccta ctcggcggca agggcgacgt gggcgccttc cacgtcaaga cgacgcgcaa
     1621 ctacaacttc gccccactca ccgagaagaa gaaggagtca gagcttataa tcaagctcgt
     1681 caaagagtac ggcggcgtca agggctaaag ggagcccgcg gccgcacgga ggtcggagat
     1741 gaaattaaac accaccatca ggcagagtaa gcttttcgcg ctggcgctcg cggccgcggc
     1801 cgccgcggcg ctgctcctgg cagccccctc gtcggcgcag agcaacaagc ccataagccg
     1861 caagggcctc gtcgagtcgg tcaaggccaa cggcctctcg accgtcgagc tggtgaggat
     1921 aatcaaccgc cgcggcgtcg ccttcgagat gacgcccgac gcagaggccg agcttcgcag
     1981 cgtcggcgcg cgccccgagg ttatagaggc cgcgcgctcg aactaccgcg acccggcccc
     2041 ggcgacgccc gcggtcgcct cgcggccgac taccaaccgc ccggccaacg tgccttcgtc
     2101 cggctcgtcg gcgcccgtgc cgccggggcc gccgctctcg aagaacgaga taataacaat
     2161 gctgcaaggc ggcatcgccc cggcgcgcgt cgagcaattc gtagaggcgc gcggcgtcag
     2221 cttctcggtc acgcccgagg tcgcgcgcga gataaccgcg gcgggcggca accgctcgct
     2281 cgtcggcgcc ataaccgaga aggcgaccgc cgagacggcg agcagctcct cgcccttcgg
     2341 cgccgactcc ggcgaggccg cgaacagcgg cgcgcccact tacgacgact acatagaccg
     2401 cgcacagacc gcgatctccg cgcaggactg gagctcggcc atcaactacg cgcagcaggc
     2461 cgcgcagctc gacccgcagc agcccaccgc cttcaccctc ctcgggacga tgctcctcta
     2521 cgccagccgg aacgtgggcg gcgccgagca ggcgatgagc gcggccatac agcgcggcgg
     2581 cgccgccgcc ttcaaggtct atcacgacca cacgggcagc tttagccagt actgccaggg
     2641 ctctttcttc gtcacgaaga ccggcgtcag cttcaaggcc gacgacggcc tcgacacctt
     2701 cgagaccgag gactcgaaca tcaaggaggc gaagacgaac gcgtgggtcg gctccgagta
     2761 tggcgccttc cacatcaagc ccgtgcagaa gatcaacggc cgggacaact tcaacttcgc
     2821 ccccgccacc cagcagaagg ccgaggccga actgatactg cgcatgatca gaaacttcta
     2881 gccgagagcg gggaggggcg acttcgcccc tccccctctt ccgcttcccc gacacaatga
     2941 agagaacgac acgccttctc gtcaccctcg ccgccgtaat attccttctc aacgcgcccg
     3001 cgccggccgc cgccctcccg cagaagcagc aggaggccga caaacaggcg gccgccgggg
     3061 cggcgcaact tcagcgcggc aactggcgcg gcgccgccga cagcttccgc aaggccctgc
     3121 gcgccaaccc caaccacgtc gaggccagct acggcctcgg cgtggcgcag atgaacctga
     3181 agcagtacca ggacgcgctc ggagccttct ccaaagtcat cgagctgaag cccaacgcgc
     3241 gcgtgcagga cgcgctgcgc ggttcgggcc tcatcttctt cgaccagcag cgctacaagg
     3301 aagtcacgga cgttttcgag cacgccaagc agtggggcca gctcacgccc tcggactact
     3361 actttctcgg caagtcctac gcgcacatga accgcgcggc cgaggcgctg gcggcgatga
     3421 agctcgccgc gccgcccccg cagcagttcg cgcacgacgc gtatttcacg ctcggcttcc
     3481 tgctcctgac ccagaacgag gcgcgcgagg ccgccgcccc cctggagcag gcggcgcagt
     3541 tgcagccaaa ccacgcgccg acgctcatgc tgctgggcaa cgcatacctc gtgcgggaga
     3601 agttccagga cgcgcacgac gtcctgcgcc gcgccgcctc catagacccg aatcagttct
     3661 tcacgcacta cgggctcggc tacgcgctga tgaacctgaa ccgcgcggag gaggccgtcg
     3721 ggtcgtttac ggccgcgatg cgtttgcagc cccagtcgcc cgaggcgcac gtcgggatgg
     3781 gcaacgcgag gctgcgcctc aaccagttca aggaggcgca gggctccttc gagcaggcgc
     3841 tgcgattgaa gcccgactcg gccgacgccc ttctcggcat gtgcgtcgtc tattactcgc
     3901 agggcgacta cccggcgctc ctcgatgcga gcgagcaggc cgtaaggctc gcgccctctt
     3961 acgccaacgc gcacacgatg cgcggcgcgg cgctcgccac cgtcgggcag atgcgggagg
     4021 ggctcgcggc cgtgcggcgc gcggcgcagc tagagcccga gaactactgg ccgcaccacg
     4081 tcatcgcctt catacacgtc cgcgaagacc gcccgcagga ggcactcccg gaggcgcgcc
     4141 ggggcgtgag cctcaagccc gaataccccg agacgcagaa cctcctgagc tacgtgctca
     4201 accagttggg ccagcaccag gaggcgctca cggccgcaca ggcggcgctc cggctcaagc
     4261 gcgagccggc tgacgagggg tgggcgcact acaacatcgc caccgccctc gaaaagctga
     4321 atcggcgcga ggaggcgctc gccgcctacc gccagtccgt cgccgcctac aaccaggtcg
     4381 gccgcacgct cgaccccgac gacctctacc tgatgggcaa cgcctacctg cggctcgacc
     4441 aggacaggca ggccatcatg gccttccgcc agtccatacg cgtcaggccc tcgttcgcgc
     4501 aggcgcgcta caacctcggc gtcgcctact tcgccgcggg cgaccgcaag tccgccatgg
     4561 ccgagtacaa cgagttgaag cgcctcgacg cagcgaaggc cgcccgcctc ctcaaagtta
     4621 tcggcgggcg ctaggagttc ggttcccaac gcggagggcg cagaggcacc gggcgcacgg
     4681 aggcggcgcg ggagccgctc tgtgggcttc tgtgcctctg cgccctccgc gttaagataa
     4741 tgcccggcgc acactcgcct cccgtcttag cgtcggcgcg ccggaactgc tatcattggc
     4801 ccttcttcat ttacccgaaa caatgacacg caaacagaaa gcgcacatag agttcaccct
     4861 gaacggcgag cccgtagagg tcgccttcgc gccgcacaag acgctgctcg aagtcctccg
     4921 cgaagacctt gggctcacgg gcaccaagca cggttgcgag ctcggcgagt gcggcacctg
     4981 cgccgtgctc gtggacggcc ggagcgccct ctcctgcctc gtcctcggtc tagaggccga
     5041 ggggcggcgc gtcgagaccg tcgaggggat ggcgacacct gacggcctgc accccttgca
     5101 ggagaccttc gccgacacgg gcgccgcgca gtgcggctac tgcacgccgg gcttcctgct
     5161 cgtcgccaaa gagctgctcg cgcagcggcc cgacccgacg cgcgacgaga taaaggaggc
     5221 gctctccggc aacctgtgcc gctgcaccgg ctacatcaaa atctacgagg cggtcgagct
     5281 cgccgcggcg cgcatgcgcg gcgaggaggc cgagcttccc agagagagcg tctatggcta
     5341 cgagtaacgg gaacgggcgg acgggcggcg gcctgaacgt cgtaggccgt cccttccgca
     5401 aggttgacgc gcgctcgaag tgcgtcggcg cgactaagtt cgcggacgac atcgcactcc
     5461 cgcgcatgct ctactgcaag attctgcgct cgaccgagcc gcacgcgctc atcaagtcaa
     5521 ttgacgtgtc gaaggcgctc tcgctgcccg gcgtcctcgc ttgtataacg ggcgaggacc
     5581 tgcccatccc ttacggcatc ctccccgtca gccaggacga gcacgcgctc tgcgtcggca
     5641 aggttcgctt cgtcggagac cccgtcgccg ccgtcgccgc cgttgacgag gacaccgcct
     5701 tcgaggcgat gaacctcata gaggtcgagt acgagcgcct gcaatccatc acgaacatcg
     5761 aagagggcgc cctcgttgac gagccgcgca tacacgatta cggcgaccac ggcaacgtcc
     5821 acaagagcgt ccacctagag ttcggcgacc tggacgaagg cttcgccgaa gcggatttaa
     5881 tccgcgagga cgccttcttc tacgagggca acacgcacct gccgatggag cagcacgccg
     5941 cggtcgccca cttcgacgcc gacggcaagc ttacgctctg gtcttcgacg cagacgccgc
     6001 actacgtcca caaggcgctc gccaagaccc ttcagatgcc ggccgcgcac gtgcgcgtca
     6061 tagcgactcc taacggcggc ggcttcggcg gcaagtctga ccccttcaac cacgagatcg
     6121 tcgtctcgga gctgtcaagg aggacgaagc gccccgtcaa gatcacattg acgcgcgagg
     6181 aggtcttcta ctgccaccgc ggccgccacc ctgtgctgat gaagagccgc atcggggtga
     6241 agaaggacgg ctcgattacg gcgctcgact tccagtcgtt cctcgacggc ggcgcctacg
     6301 gctcctacgg cgtggcgtcc accttctaca ccggcgcctt gcagaccgtc acatacgagg
     6361 tgccgcgcta ccgcttccgc ggcatgcgcg ccttcaccaa caagccgccc tgcggcccca
     6421 agcggggcca cggcacgccg cagccgcgct tcgccctcga aatccagctc gaccgtgtcg
     6481 ccgaagaact cggcctcgac ccggccgaga tgcgcctcaa gcacttggtg aaaccctaca
     6541 cggtgacggc caactacctt cgcataggct cgatgggatt aggcaagtgc atcgagaagg
     6601 tcgtcgccgg ctcgggctgg aagagcaagt tcaagcagtt gccttacggc cgcggcgtcg
     6661 gcctcgcgtg cagttcctac atctgcggcg cggggcttcc gatctactgg aacagcatgc
     6721 cgcactcggg cgtacagcta cggctcgacc gccagggcgg cgtctgcgtg cagtgcggct
     6781 cgaccgacat aggccagggg tctgattccg tgctcgccta catcgtcgcg gagattctag
     6841 gcatagaccc cttcgacatt cgcgtcgtca cggccgacac cgatcttacg cccgttgacc
     6901 tcgggagcta ttcgagccgc gtgactttga tgaccggcaa cgccgccata caggcggccg
     6961 agcgcgcgag agagcttttg acgagggccg tctccgagaa gctaggcgtc cccgtggaca
     7021 acctctcgct cgcagaccgc cgcgtcttcg acgtggagaa ccccgaagta gggatgacgt
     7081 tcgccgaggc ggtcgtcctc gccgagcaga agtacggcac catcggaacg gtcggctcct
     7141 acgtgccgcc gcgcgcgccc ggccgcttca agggcgcggg cgtaggcccc tcgcccgcct
     7201 acagctactc cgcggcggtc gccgaagttg acgtggacgt tgacacgggc ttcgtcaacg
     7261 tcgggaagat ttgggtggcg cacgacatcg gcaagagcat aaacccgatg ctggtgatgg
     7321 ggcaggtcga gggaagcgtc tatatgggcc tgggcgaggc catcatggag gagatgacct
     7381 accgcgccaa tcgcaacgtc gtccacaagt tcccctccat gctcgagtac aagagcccga
     7441 cgacgctgga gatgtgcgaa gtcttcacct acctcgtcga agacccagac ccgaacggcc
     7501 catacggcgc caaggaggtc ggccaggggc cgctcctccc cgtcatgccc gccatcgcca
     7561 acgccgtcta tgacgccgtc ggagtgcgca tagacgaagt ccccgtcacg cccgagaagg
     7621 tgctcgccgc gcttcgcgcg aaacagcagg gcaaggagcc gcgcttcggc ccgaagggcg
     7681 tcccctcggt caactggccc gagcccctca aggtcttgac gcccgccgag ggcggcgacg
     7741 gccgcgagat gccgcgcgtc gccgtgcatt cctaggagat gaggatttaa taagaccgtt
     7801 atgatgagac ttccgaagtt cgcttactgc gccccgaaga ccgtggggga agcggtgagg
     7861 ttgaggggcg aggcggggcc tgcggggcag ttcgtcgcgg gcgggactga cctctacccg
     7921 aacatgaaga ggcggcagca gacgcccgag accgtcatct cggtcgggcg catacacgag
     7981 ctgcgaagga tagaaggcga cggcaaagaa ggtctgagga taggcgcggg cgtgtcactc
     8041 acggaagtag tcgagcaccc ggtcgtgaac cgcgactacc cttcggtggc gcgcgcggcg
     8101 aggcttatct cgacgccgac gctgcggaac atggggacga taggcgggaa cctcctgctc
     8161 gacacgcgct gcaactacta cgaccagaac tacgagtggc ggcgctcgat caacttctgc
     8221 atgaagaagg acggcgaggt ctgctgggtc gcgcccggca gcccgaagtg ctgggccgtg
     8281 cagtcctcgg acctcgtgcc gctgatggtg gcaatggggg cgcgcgtgcg gctcgtctca
     8341 acggtcggcg accgtctcgt ctcggccgcg gggctctaca acgacgacgg catagactac
     8401 ctgcacaagc gccccgaaga gctgctcacc gaaattcacc tgccgcccgt ggacggctgg
     8461 cgcgcggttt acaagaagct caggcggcgc ggcgccttcg acttccccgt gctcggcgtg
     8521 gcggcggccg ttagggtcgg cgaccgaggc gaggtggagg aggcgaaggt cgtgttgggc
     8581 ggcgtcgccc ccgcgccgct ggaagtcgaa gcggcgggca aggcgctcgc gggcgggccg
     8641 ctcgatgagg ggcgcatcag ggcggcggcc gaggcttgct accttaaggc gcgcccgctc
     8701 gacaacacag accaccttat gaactaccgc aagcagatgg cgcgcccctt cgtcatgcgc
     8761 gccctcgaag agctgcggca gtctctgtca tgagcttcgg aggggtcgcg gccgtcctgc
     8821 tcgccgcggg gcgctcgcgg cgtatggggg cgttcaagcc gctcctgcct ttcggcggcg
     8881 tgaccgtcgt cgagagctgc gtcgagacgc tacaggccgc gggcgcggcc gagaccgtgg
     8941 tcgtcgtggg ccaccgcgcc gaagacgtgc gcgcggcgct cgccgggcgc ggtgggctgc
     9001 ggttcgccgt gaacgaagat gcgacgagcg agatgggcgc ctccatcgcg cgcggcgtcg
     9061 aggcgctatc ggcggcgacg aaggccgcgc tggtcgcgct cgttgaccac ccggccgtgc
     9121 cggccgcgga ggtgagaaag ctcgtcgaag cgtgggtggc gacgggggcg ccgctggtct
     9181 tgcctgagtg ggaggggcgt ggcggtcatc ccgtcctagt tgacatgcgg ctcagggaag
     9241 agctattaag cctcgacgcg cggggcggcc tgcgctccct cttcgccgag cacgccgggg
     9301 agatgctgcg cgtgccggcc ggctcgccat acgtcgtgcg tgacatggac acgtggggcg
     9361 agtacgcggc gctataccgc gacgttttcg gcacagagcc gccggccgcc ggcgggccgg
     9421 catgagacgg gccggggcga cttgtacgcc tttcaaacaa ccattctttt tgacggctca
     9481 tctaaagatt tcaggacagg cggcccgcaa gtgccgggcg cttttcggcg gttattaggg
     9541 cgacgaaaac agaattgccc gcgccggccg cctccgggag aagaagatgt tcaagcgcaa
     9601 acccctacgt gccatcgccg cggcgctggc ttttttgttt gccctgtcgg gcgccgtgct
     9661 cgtcacgccg gcgcgcgcgg ccgcgccgct cgtgttccga ctgcgcacgg ccgacggcgg
     9721 cgagataact tccgagatgc tgcgcggcga cgtggttgtg ctcgccttcg gcgcgtcttg
     9781 gctaccgctg tccaagtcgc aggtgcagaa ggttcaggag ctggcggacg cctacggccc
     9841 gcgcaacgtg cgcgtctatt gggtgagcac cgactcggtc aagccgcagt cgaagaacta
     9901 cgcctcggac gagcaactgc gctccttcgc cagcaagaac ggcctgaaga tagccgtgct
     9961 gcgcgacccc gacggcgcgc tcttcaagca gactggcgcc gaccagcttc cgtcaatcgt
    10021 catactcgac cgcgagggcg aagtctccgg cgcgcccatc ggcggcctcg accccgatcc
    10081 gcagcgcaag ctcacgcagg cgctctcgcc gcgcctcgac aagctactcg ccggccagta
    10141 atgaaaagtt aaggcgaaga gggaggacga aagccacggt ggctttcgtc ctccctcttt
    10201 tttgtctttc caattaccgc atcccgcggg caagctcata gacgagccgg acgggcaggc
    10261 cgacgacgtt ccagtagtct ccctctatcg cctcgatgaa tagcgcggcg cggccctgca
    10321 cggcgtaggc gccggccttg tcgagcacgt cgcccgtgcg ggcgtgccag tcaatctcct
    10381 cctccgacac ctctgcgaag cgcacgcgtg tccgctccac accgacggcc gcgcgccccg
    10441 actcggcgcg cacgagagca acgcccgtca ggacttcgtg ccagcgcccg gcgagcgccc
    10501 gcagcatcct tcgcgcgtcg tcttcgtctt ccggcttccc caaaatttcg ccgtccacca
    10561 ccacggtcgt gtcggcgccg agcacgaggc cgaagaggcg cgaagaggcg gcggcctcgg
    10621 ccttctcgcg cgcgaggcgg cggacgtact cctcgggcgg ctcgccttct cttaaggact
    10681 cgtcaacgcc ggccgggctc gtctcgaaag gccagccgac cgcgcgcaga atctcggccc
    10741 gcctc
//
LOCUS       DASPKR010000052         2025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_265648, whole genome shotgun sequence.
ACCESSION   DASPKR010000052 DASPKR010000000
VERSION     DASPKR010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265648"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            35..469
                     /locus_tag="VD968_01540"
                     /pseudo
     CDS             35..469
                     /locus_tag="VD968_01540"
                     /inference="COORDINATES: protein motif:HMM:NF013118.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
     gene            910..>2025
                     /locus_tag="VD968_01545"
     CDS             910..>2025
                     /locus_tag="VD968_01545"
                     /inference="COORDINATES: protein motif:HMM:NF028519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HYE13105.1"
                     /translation="MSKARVLRRGAALAACALLLALCAPSGASAQTGRSTVRGTVRDP
                     QGNVVAGATVTLSDAERNVSRTQTTNEEGSYTFPAVPPGTYRVEVEAAGFKKAAVSDV
                     QALVDTPVDINVELQPGLATETVTVTASTEAPLNTTDATLGSAFESRRIEELPLNARN
                     VVGLLSLQAGVTRGGYVNGGRADQANVTLDGVDNNEQQRGLDVVTDEAFASVLRSTPD
                     SLQEFRVITTNPNAEQGRSSGAQVSLVTKSGTNEWHGSLYEFHRNTVTTANDFFNNAA
                     GSYGPNDFAVLTGAARAGDPRAPRPQLIRNVFGGSIGGPLKKDRAFFFFNYEGFREAS
                     ETPVVREVPLPTLGQGIVRYRTASGFSDPGCPAGTPSG"
BASE COUNT          353 a          731 c          637 g          304 t
ORIGIN      
        1 ggccccggcg ctcgtccgca tacactcgca gtgcctgacg ggcgacgtct tcggctcgac
       61 gaagtgcgac tgcggccgcc agctgcgccg ggccatggag ctcatagagc gggaggggcg
      121 cggcgcggtc gtctaccaga tgcaggaggg gcgcggcata ggcatcatca acaagatccg
      181 cgcctacgcc ctccaggacg agggcgccga caccgtggag gccaacgagt gactcgggct
      241 cggcgttgac ctgcgcgagt accgccagtg cgccgaagtg ctctccgaca tggggctgtg
      301 cgaggtgagg ctgatgtcga acaacccgct gaagctgcgc gcgatggagg aggcgggcct
      361 gagggtcgtc gagcgcgtgg ctctcgaggt cgagccctcg gacgccgccg tccactacct
      421 gcggacgaag aagcagaagt tgggccacct gctcgaacag ataaagtaac ttctcacccc
      481 gtacattttc ttgcacgact ggggcgcccg ccgccacggc cctttaggcc ccggaacggc
      541 gggcgctttc gcgcggcgcg gcgccgcccg cccccagcga ccgtccaaaa tcttagaccg
      601 ccagtccata ttttcggata taatccgcga ccgttccagc agccttccgc gccgaaaccc
      661 ttgaaagccg ttacccttaa cctcgcgggg gaaagtcgcg ccgggcgtgg aacgacagtt
      721 gccgaactct tttgcataca tcatcaggcc cgccgaggcg cttttagtgc ggttctaaat
      781 tttcgcccgg cccgaaggct cgaaggcttc atccgtcagg tcacagctca gtttgcctgc
      841 ccgcgcgacg cgccgccccc gaggcgcctg cgccgctcgg ctgaaccacc taacctaagg
      901 agacggacaa tgtctaaagc cagagttcta aggaggggcg cggccctcgc ggcctgcgcc
      961 ctgcttctcg ctctgtgcgc cccctcgggc gcatccgcgc agacgggccg ctcaacagtg
     1021 cgcggcacgg tcagagaccc gcagggcaac gtcgtggcgg gcgccaccgt cacgctctcc
     1081 gacgccgaaa ggaacgtctc gcgcacgcag acgacgaacg aggagggcag ctacactttc
     1141 ccggccgtcc ctcccggcac gtaccgcgtc gaggtcgagg cagccggctt caagaaggct
     1201 gcggtctccg acgtgcaggc cctagttgac acgcctgttg acataaacgt tgagttgcag
     1261 cccggcctcg ccacggaaac cgtcaccgtg acggccagca ctgaggcccc cttgaacacg
     1321 acggacgcca cgctcggctc ggccttcgag agccgccgca tcgaggagct gcccttaaac
     1381 gcgcgcaacg tcgtcgggct gctctcgctt caggccggcg tcacccgcgg cggctacgtc
     1441 aacggcggcc gcgcagacca ggccaacgtg actctggacg gagttgacaa taacgagcag
     1501 cagcgcggcc tcgacgtagt caccgacgag gctttcgcct cggtgctgcg ctcgacgccg
     1561 gactcgctac aggagttccg cgtcatcacc accaacccga acgccgagca gggccgctcc
     1621 tccggcgcgc aggtctcgct cgtcaccaag tccgggacga acgagtggca tgggagtctc
     1681 tacgagtttc accgcaacac cgtcaccacg gccaacgact tcttcaacaa cgccgccggc
     1741 agctacggcc ccaacgactt cgccgtcctg accggggcgg cccgcgccgg cgacccgcgc
     1801 gccccgcgcc cgcagctcat ccgcaacgtc ttcggcggct caatcggcgg ccccctcaag
     1861 aaggacaggg ccttcttctt cttcaactac gagggcttcc gggaggccag cgagactccg
     1921 gtcgtgcgcg aggtgccgct cccgactctg ggccagggca tcgtccgcta ccggacggcc
     1981 agcggcttta gcgaccccgg ctgcccggcc ggcacgccct ccggc
//
LOCUS       DASPKR010000053        11250 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_783450, whole genome shotgun sequence.
ACCESSION   DASPKR010000053 DASPKR010000000
VERSION     DASPKR010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11250)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11250
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_783450"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..629
                     /locus_tag="VD968_01550"
     CDS             <1..629
                     /locus_tag="VD968_01550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13106.1"
                     /translation="RAFLLLAFSYPFVAFVARDAEAMERVPPILRGWVGALETVLLIA
                     TVAAAALWLGRQAQRWLRRRPLNLPKYLLLAAAVPMHWAVLLTPMPHKPIAIVAMLTV
                     YHNFQYHRLVWFHNRKYTRDGSCRERFGAAEFISRRLVHYVALGVLFGVWYQVPRQYV
                     NHAADPEAFMTQMASGFLWGYAFVHYYLDSKIWRVRRDPSVGKALSLG"
     gene            complement(708..1007)
                     /locus_tag="VD968_01555"
     CDS             complement(708..1007)
                     /locus_tag="VD968_01555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13107.1"
                     /translation="MATAASQMTQGSTSTGNTGTSLTAGGGKDVVESTLRTVDESTKT
                     ATGVSLFHILTLASIGGSLALFFAGKKSAAIFVGLWPPTFQALKSVADTNKENRK"
     gene            complement(1186..1644)
                     /locus_tag="VD968_01560"
     CDS             complement(1186..1644)
                     /locus_tag="VD968_01560"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYE13108.1"
                     /translation="MLFVKESVIHAPPERVFAFHELPGVLERLTPPWEKTRVVEHAAS
                     LRAGERTVVETRALGLWPVRFVAEHTAYDPPRMFEDVQLAGPFRRWRHRHIIRPHENG
                     AVLRDEIDFEPPLGRLGRAAARLLVLPRLRRLFDYRHRVTSEWCEGVARG"
     gene            1731..2312
                     /locus_tag="VD968_01565"
     CDS             1731..2312
                     /locus_tag="VD968_01565"
                     /inference="COORDINATES: protein motif:HMM:NF017778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine dioxygenase family protein"
                     /protein_id="HYE13109.1"
                     /translation="MTTTHTQTLAAADADAVTPPGSLASLVGRLAALDRAPSLPEVNE
                     WMRAAGPSAEELRPHVSFKEGTYARHRVFMNDYAELLVLCWRPGQRTPIHDHNGSFGA
                     VRVLSGVMWETLFEMDGGRGLAYKSARQWEPGQITGADIPDIHQLGNPDVSGQDLITL
                     HLYAPPLTSLNVYTVGRRDSYSTLWLNSWNPTI"
     gene            complement(2392..3819)
                     /locus_tag="VD968_01570"
     CDS             complement(2392..3819)
                     /locus_tag="VD968_01570"
                     /inference="COORDINATES: protein motif:HMM:NF016201.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HYE13110.1"
                     /translation="MEDREIKDLEKALEQIWDVARGFGLDPYPVRFEIVPATVMYEIG
                     SYALPGRYSHWTFGKAYHRMKTMYDFGLSKIYEVVINTNPSYGFLLETNSPVQNKLVM
                     AHVLGHVDFFKNNAYFSKTNRRMVETVSTHAGRMAEYEFRHGRKRVEQFLDAVLSIEE
                     HIDPNFFIRREVPAGPERERERAHSPKPAGRYDDLWDIGKKPDHGAPADEAQSQLARG
                     DRLPEKDLVYYIMRNSPSLEDWQRDVMAMVHEEMEYFVPQMQTKVMNEGWASYWHARI
                     MRELELPDVELLEFAELHSGVVSPHKGQLNPYYLGYKIFEDIERRWDDPSAGERERFG
                     RAGGEGRAKIFEVRELENDVSFLRNYLTEELCEELDLFVYELVDDEEWTVTEKRWERV
                     RDQLVANMTNFGFPYIVIADGDYNGNRELYLKHQYEGSELDSGYARKVLEHIYALWGR
                     PVHLETVVDEEPVRLHYNGEEHDED"
     gene            4212..7397
                     /locus_tag="VD968_01575"
     CDS             4212..7397
                     /locus_tag="VD968_01575"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE13111.1"
                     /translation="MKHKLSAIASAFAVLLCLSASAFGQETTGVIEVTTKDPQGGAVT
                     GVTITIQSRSRVDAANPTATGAGAFTRTVTTDENGFARVLQIPPGFYTVATTAVSGFG
                     ATTVTDVEVTLGRTTPVNITLRAGDVRETVTVTASDVVSIDPTSNRIQTNITAQAAEL
                     LPKGTNFTSLLQVAPAVRNEPLSGGFQVDGASGSENTFIIDGQEVTNFRTGTLNGNNN
                     IPFQFVQEVQVKSSGFEAEFGGATGGVINVVTKGGSNEWHGEFGTSFQPAGLQAGPRR
                     ILTNAFGDARYFQPPKDEGTNHFPTFNLSGPIIEDRAWFFASYSPQIRNTRRTINFID
                     TDDESIVGTETYNLRQTNHYAFMRLDSNIFNNLRFNGTWTWNPIAVEGELPALSDALS
                     GSPVDPADLRDHGGRQNSQNVTGQLTWTPNSKFVLTARGGYSFLNEAIGSYGVENIVG
                     QARIFISGLSVTSAIPAEAGGQRGSFNRLFSEQLLFDASRRRTFDADASYYVSGFGGR
                     HLIKGGYQLNALANDVFNTFIDQVSLRYGRDINFTSGVPASILPPTPGAIGSGLLQRF
                     SEKGSASSRNQAIYIQDNWQPTSRLSLNFGVRAERENAPSFIPGQASITFGFGDKIAP
                     RLGFAYDLTGDGRTKLFASYGRFFDRFKYELPRGSFGGNFFRVDYFEIFPGAGAFTNF
                     TPASILGSNPDIPGGRCPITSGLGRTRCQLDFRVASNSGLPLLEAGGIDPDIKPFRQT
                     EFTVGMERDLGSGFLFSSRFTHKQVDRAVEDIGFHNEAGSEIYIIGNPGEGLAREIYE
                     GFGFDSPKAVRDYDALELRLDKHSSKRYYFNASYTFSRLYGNYSGLASSDEDGRTSPN
                     VNRYFDQPFSAFTANAELDNGRLPTDRPHVFKFYGAYTLDWNDQFGALRGNSTEFSAF
                     TTAQSGTPLTTRFTFQSYDSIILDRRGDLGRTEAFTQTDFAIRHKVRFGESERFMFVF
                     DLDILNLFNEDNVLGVFDNISGFNFSGEEIGLSSDSIQAGGDFQRIPTLDRIRAIIND
                     PDEGGGPDERYGLANSFQAGRSVRLGFRFIF"
     gene            complement(7509..8540)
                     /locus_tag="VD968_01580"
     CDS             complement(7509..8540)
                     /locus_tag="VD968_01580"
                     /inference="COORDINATES: protein motif:HMM:NF024572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13112.1"
                     /translation="MIRGVRLALGLALVFAAAAPLAGAAQQSRRNVIMGHVFGESRLP
                     LSDVFVELLDDLGVTVNRTRTNSSGRYEFASLPEGRFRVRVLPYGTDYAEQAQEVIIS
                     NVSARGGGTGSEIQQKDFYLRLRPELSAGPFAAPGTVFAQEVPEAARRLYERGVAELR
                     AKKDREGFESLKGALDAFPDYFAALDRLGTEYAVRGNSNPAYFEAARVLLTRAVAVNP
                     GSYSSAFGLGFAQYNLGMTGEAVENFQRAVRLYDKSVNGHMWLGVALKKAGKLPQAEA
                     ALARAKKLSNGKVPEVHMRLAEVYSEQKRYGEAADELELFLKHQRDARDADKIRLLIM
                     QLREKAAAR"
     gene            complement(8593..9783)
                     /gene="yhbH"
                     /locus_tag="VD968_01585"
     CDS             complement(8593..9783)
                     /gene="yhbH"
                     /locus_tag="VD968_01585"
                     /inference="COORDINATES: protein motif:HMM:TIGR02877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0030436 - asexual sporulation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation protein YhbH"
                     /protein_id="HYE13113.1"
                     /translation="MTNDSQISGTIQRNDWSLQRKGIIDQERHKERVKEAIRKNLGSI
                     VSNEAIILSDGRRTVKVPIRSLDEYKFRFDHRKRKHVGTGDGRTRVGDVIAREGQPGQ
                     GAGRGQGPAGQGAGAEYYDAEVDIDELAALIFEDLQLPFLEEKAKRAVPSKTTRFNEI
                     RRTGVFSNLDKRRMIMENIKRNAREAREPRFGGVRKEDMRFKSWEEENRYESNAVVLA
                     LMDVSGSMGEFKKYIARSFFFWMVRFLRTKYDNVEIVFISHHTEAREVTEEQFFTQGE
                     SGGTVVSSAYQLALDVIAQRYPPRDWNIYPFHFSDGDNYYSDNEEAVRLADELIKTCN
                     LFGYGEIGEEGGGGYRRSSGALLSIFNDRLKQKGRFIGVRIDDKEDVYPALKQFFGSR
                     GVEV"
     gene            complement(9876..>11250)
                     /locus_tag="VD968_01590"
     CDS             complement(9876..>11250)
                     /locus_tag="VD968_01590"
                     /inference="COORDINATES: protein motif:HMM:NF018504.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13114.1"
                     /translation="HTYGGRHEDVRVHRVLFSEKQRVGIGTFSPSDPKSQDVTELTGS
                     IDLSTIGEVGVESDPRAYRFDGELNIANRGVMEFIEMLKCDEKFLYNLLTLSQEQSIK
                     TGRFAMIYADEVILSHTNENEYVAFAGNRKSEALQDRIILVRVPYNLRVSQEERIYDK
                     LLKQSDVLRNVHIAPNALKVAAMFAVMTRLEEPKRANVDIVKKMKLYDGEDVEGYKSK
                     DVRELKDEAVREGMDGISPRYIINRLSTALVRDGVTCINPIDALRAIKDGFEQHTGIT
                     PDQRERYLNLISAARKEYDEMAKTEVQRAFVYSFEEMARTMCNNYLDNVEAYCNKEKM
                     KDPITEEEMEPDEPLMRSIEEQIGVSENAKNTFRQEILIRISSYARKGKQFEHTSHER
                     LKEAIEKKIFADLKDVVKITTSAKTPDPDQLRRINEVVDRLVKEHGYCPVCANELLTY
                     VGTLLSR"
BASE COUNT         1871 a         3803 c         3498 g         2078 t
ORIGIN      
        1 accgcgcctt cctgcttttg gccttctcct accccttcgt cgccttcgtc gcgcgcgacg
       61 cggaggcgat ggagcgcgtc ccgccgattt tgcgcggctg ggtcggcgcg ctcgaaacgg
      121 tgctactaat cgccacggtc gcggccgcgg ctttatggct cgggcggcag gctcagcgct
      181 ggctcaggcg tcggccgttg aacctgccga agtaccttct gctcgccgcg gccgtgccga
      241 tgcactgggc cgtgctcctg acgccgatgc cgcacaagcc catagccatc gtcgcgatgc
      301 tcacggtcta tcacaacttc cagtaccacc gcctcgtctg gtttcacaac cgcaagtaca
      361 cgcgcgacgg ctcgtgccgt gagcgcttcg gcgcggcaga gttcataagc aggcggcttg
      421 tgcactacgt cgcgctcggc gtgctcttcg gcgtctggta tcaggtgccg cgccagtacg
      481 tgaaccacgc cgccgaccca gaggctttca tgacgcagat ggcctcgggc ttcctctggg
      541 gctacgcctt cgtgcactac tacctcgatt cgaaaatctg gcgcgtgcgc cgcgaccctt
      601 ccgtcggtaa ggctttgagc ctcggatgag ccgcctgaat gaagagaggg ccgcggggag
      661 tctgcctccg cggccctctc gcctttccgt gttgacgaag gaagcgccta cttcctgttc
      721 tccttgttcg tgtcggccac ggacttgagc gcctggaacg tcggcggcca gaggccgacg
      781 aagatggccg ccgacttctt gccggcgaag aagagcgcga gcgagccgcc gatggaggcg
      841 agcgtcagta tgtggaacag gctgacgccc gtcgccgtct tggtggactc gtcaaccgtg
      901 cggagcgtgg actcgaccac gtccttgccg ccgccggccg tcaaagaagt gcctgtgttg
      961 ccggttgagg tgctgccctg cgtcatttgc gaagctgctg ttgccattgg ctaattctcc
     1021 ctttgttcat tattgattta agtccagctc aacgccggag tccgcgcgcc ccttgagcac
     1081 ggcgacgccg aacaggacgg ccagcgacag gcccgcgatg agccagcccc gcccgtgccg
     1141 cgtttgattt cgggtcgttt tttcagacat gcaccgttag gattgctacc cgcgtgccac
     1201 accctcgcac cactcgctcg tgacccggtg gcggtagtcg aagaggcggc gcaggcgcgg
     1261 cagcacgagt agccgcgcgg cggcgcggcc gagccgccca agcggcggct cgaaatcaat
     1321 ctcgtcccgg agcactgcac cgttttcgtg cgggcgtatg atgtggcggt ggcgccagcg
     1381 cctgaacggg ccggcgagct gtacgtcctc gaacattcgc ggcgggtcgt aggccgtatg
     1441 ctcggcgacg aagcgcacgg gccagaggcc cagagcgcgc gtctcgacca cggtgcgctc
     1501 gcccgcgcgg aggctcgcgg cgtgctcgac gacgcgcgtc ttctcccacg gcggcgtcag
     1561 ccgctccagc acgcccggca gttcgtggaa ggcgaagacg cgctcaggcg gcgcgtgtat
     1621 cacactctct ttgacgaaga gcataaggtg aacctgttca cgccttgact tcgcgcacgg
     1681 cgcgcgagca tccttaaaaa cactgagccg cgcggaggtg agagacggac atgaccacga
     1741 cccacacgca gacgctcgcc gcggctgacg ccgacgccgt aacgccgccc ggctcgctcg
     1801 cctccctggt cgggaggctc gcggcgctcg accgcgcccc gagtctcccc gaggtgaacg
     1861 agtggatgcg cgcggcaggg ccttcggccg aggagcttcg cccgcacgtc tccttcaagg
     1921 aggggactta cgcgcgccac cgcgtcttca tgaatgatta cgccgagctg ctcgtcctct
     1981 gctggcggcc gggccaacgc acgcccatac acgaccacaa cggctcgttc ggcgccgtgc
     2041 gcgtgctctc cggcgtgatg tgggagacgc tcttcgagat ggacggcggg cgcggcctcg
     2101 cctacaagag cgcgcgccag tgggagccgg ggcagataac cggcgccgac atccccgaca
     2161 tacatcagct cggcaacccc gacgtgagcg gccaggactt gataacgcta cacctctacg
     2221 ccccgcccct caccagcctg aacgtctata cggtcggccg cagagactcc tacagcaccc
     2281 tctggctcaa ctcctggaac cctacgatat aaaagcagat tttggatatt agatattaga
     2341 cgctggtaag agccacgcct ttaccagcat ctggcatctg acatctacct tttagtcttc
     2401 gtcgtgctct tcgccgttgt agtgcaggcg gacgggctcc tcgtcaacga cggtttctag
     2461 gtggacgggg cggccccaga gcgcgtagat gtgctcgaga accttgcggg cgtagcccga
     2521 gtccagttcg gagccctcgt actggtgctt gaggtagagc tcgcggttgc cgttgtagtc
     2581 gccgtcggcg atgacgatgt aggggaagcc gaagttcgtc atgttggcga cgagctggtc
     2641 gcgcacgcgc tcccagcgct tttccgtcac cgtccactcc tcgtcgtcca ccagctcata
     2701 gacgaacagg tctagctcct cgcaaagctc ctcggtcagg tagttccgaa ggaacgacac
     2761 gtcgttctcc agctccctca cctcgaaaat cttcgcgcgc ccctcgccgc ccgcgcgccc
     2821 gaaccgctcg cgctccccgg ccgaggggtc gtcccagcgc cgctcgatgt cctcgaaaat
     2881 tttgtagccc aggtagtagg ggttgagctg ccccttgtgc ggcgagacca cgcccgagtg
     2941 cagctccgcg aactccagaa gctctacgtc cggcaactcc agctcccgca tgatgcgcgc
     3001 gtgccaatac gaggcccatc cctcgttcat caccttcgtc tgcatctgcg ggacgaagta
     3061 ctccatctcc tcgtgaacca tagccatcac gtcgcgctgc cagtcctcga gcgagggcga
     3121 gttgcgcatg atgtaataga cgaggtcttt ctcggggagg cggtcgccgc gcgcgagctg
     3181 gctttgcgcc tcgtcggcgg gcgcgccgtg gtcgggcttc ttgcctatgt cccagaggtc
     3241 gtcgtagcgg ccggcgggct tcgggctgtg cgcgcgctcg cgctcccgtt cggggccggc
     3301 cggcacctcg cggcgtatga agaagttggg gtctatgtgc tcttcgatgg agagcacggc
     3361 gtcgaggaac tgctcgacgc gcttgcggcc gtgcctgaac tcgtactcgg ccatgcggcc
     3421 cgcgtgcgtg gagacggtct cgaccatgcg gcggttcgtc ttcgagaagt aggcgttgtt
     3481 cttgaagaag tccacgtggc cgagcacgtg cgccatcacc agcttgttct gaacggggct
     3541 gttcgtctcg agcaggaagc cgtaagaagg gttcgtgttg atgacgacct cgtaaatctt
     3601 cgacaggccg aagtcgtaca tcgtcttcat gcggtggtag gccttgccga aagtccagtg
     3661 cgagtaacgg cccggcaagg cgtatgagcc tatctcgtac ataacggtcg ccggcactat
     3721 ctcgaagcgc acggggtagg ggtcgaggcc gaagccgcgc gccacgtccc aaatctgctc
     3781 cagggccttc tcgaggtctt tgatctcgcg gtcttccata cccccattgt ctgtcctgag
     3841 tggccggcgc cgcaagaact ttcccgccgg ccgcggccgg aagcgcaccc aggaaatcac
     3901 ccccgcaccg gccgtgcatt caattttttg gacataggta catttttttg ttaacatcca
     3961 gcccgtcccc gactcatctc tgcgcagtca taaagcaaaa aaccgaccgt cgtacgcctt
     4021 aagtcaagcg ttttcgcacg attttcaacc cggcctcgca tttagaacag aagtcccgtc
     4081 tgcacgcaaa gcccgtcacc ccgctttacg tctgggagca gggacttcag cccgtgtgtt
     4141 ccgccgcacg aacttacccc ggatgcgggc cagccccgtg cccactttcc cagcaactag
     4201 gagcgatgga gatgaaacat aaactctcgg caatagcttc agccttcgcc gtcctgctgt
     4261 gcctgtccgc ctcagccttc gggcaggaaa cgacgggcgt catagaggtg acgaccaaag
     4321 acccgcaggg gggcgccgtc accggcgtca cgataacgat ccagagccgc agccgcgtgg
     4381 acgccgcgaa tcccacggcc acgggcgcgg gcgccttcac gcggacggtg acgacggacg
     4441 agaacggctt cgcgcgcgtc ctgcaaatcc cgcccggctt ctacacggtc gccaccacgg
     4501 ccgtctccgg tttcggggcg accactgtga cagacgtgga ggtcacgctc gggagaacca
     4561 ccccggtcaa catcacgctc cgggccggcg acgttaggga gaccgtgacg gtgacggcgt
     4621 ccgacgtcgt ctcgattgac cctacgagca acaggattca gaccaacatc acggcgcagg
     4681 ccgccgagct gctgccgaag ggcactaact tcacgagcct tttgcaagtc gccccggccg
     4741 ttcgcaacga gcccttaagc ggcggcttcc aggttgacgg ggcctccggc tccgagaaca
     4801 ccttcatcat tgacggccag gaggtgacca acttccggac ggggacgctc aacggcaaca
     4861 acaacatccc gttccagttc gtgcaggagg tgcaggtcaa gtcttccggg ttcgaggccg
     4921 agttcggcgg cgcgaccggc ggcgtcatca acgtcgtcac caagggcggc agcaacgagt
     4981 ggcacggcga gttcggcaca tccttccagc ccgcgggcct tcaggccggc ccgcgccgta
     5041 tcctgaccaa cgccttcggc gacgccaggt acttccagcc gcccaaggac gagggtacga
     5101 accacttccc gaccttcaac ctgagcggcc ccatcatcga agaccgcgcg tggttcttcg
     5161 ccagctactc gccgcagata cgtaacacgc gccgcaccat caacttcatc gacaccgacg
     5221 acgagagcat cgtcggcacc gagacctaca acctgcggca gaccaaccat tacgcgttca
     5281 tgcgccttga cagcaacata ttcaacaacc tgcgctttaa cggcacgtgg acgtggaacc
     5341 cgattgcggt ggaaggcgag ctgcccgcac tctccgacgc cctctcaggc tcgcccgttg
     5401 accccgccga cctgagggat catggcgggc gccagaactc gcagaacgtc acggggcagc
     5461 tcacgtggac gccgaacagc aagttcgtcc tgacggcgcg cggcggctac agcttcctca
     5521 acgaggccat cggctcctac ggcgtggaga acatcgtcgg gcaggcccgc atcttcatca
     5581 gcggcctgag cgtcacgagc gccatccccg ccgaggcggg cgggcagcgc ggctcgttca
     5641 accgcctgtt ctccgagcag ctcctcttcg acgcctcgcg ccgacgcacc ttcgacgccg
     5701 acgccagcta ctacgtgagc ggcttcggcg gccgccacct cataaagggc ggctaccagc
     5761 tcaacgccct cgccaacgac gtgttcaaca ccttcattga ccaggtctcg ctccgctacg
     5821 ggcgcgacat caacttcacc tccggcgtcc cggcctcgat cctgccgccg acgcccggcg
     5881 ccatcggctc cggtctcctc cagcggttca gcgaaaaggg gagcgcgagc agcaggaacc
     5941 aggcgatcta cattcaggac aactggcagc cgacgagtcg gctgtcgctc aacttcggcg
     6001 tccgcgccga gcgcgagaac gcgccgagct tcataccggg ccaggccagc atcacgttcg
     6061 gcttcggcga caagatcgcc ccgcgcctcg gcttcgccta tgacctgacg ggcgacggcc
     6121 ggacgaagct cttcgccagc tacgggcggt tcttcgaccg cttcaagtac gagctgccgc
     6181 gcggctcctt cggcggcaac ttcttccgcg ttgactactt cgagatattc cccggcgccg
     6241 gggcgttcac taacttcacc ccggcgtcca ttctcggcag caaccccgac atccccggcg
     6301 ggcgctgccc catcacgagc ggcttgggcc gcacgcgctg ccagctcgac ttccgcgtcg
     6361 cctccaactc cggcctcccg ctcctcgagg ccggcggcat tgaccccgac atcaagccct
     6421 tccgccagac cgagttcacc gtcggcatgg agcgcgacct cggcagcggc ttcctcttca
     6481 gcagccgctt tacgcacaag caggttgacc gcgccgtcga ggacatcggc ttccacaacg
     6541 aggcgggcag cgaaatctac atcatcggca accccggcga gggactggcc cgcgagattt
     6601 acgagggctt cggcttcgac tcgcccaagg cggtgcgcga ctacgacgcg ctcgagcttc
     6661 ggctggataa gcactcctcg aagcgctact acttcaacgc gagctacacc ttcagccgcc
     6721 tgtacggcaa ctactccggc ctcgccagct cggacgagga cgggcgcacc agcccgaacg
     6781 tcaaccgcta cttcgaccag ccgttcagcg ccttcacggc caacgccgag ctcgacaacg
     6841 ggcggctgcc gaccgaccga ccgcacgtct tcaagttcta cggcgcctac acgctcgact
     6901 ggaacgacca gttcggcgcg ctgcgcggca acagcacaga gttctcggcc ttcaccacgg
     6961 cgcagagcgg cacgccgctc accacgcgct tcaccttcca gagctacgac agcatcatcc
     7021 tggacaggcg cggcgacctc gggcgcaccg aggcgttcac gcagaccgac ttcgccatcc
     7081 gccacaaggt tcgcttcggc gagagcgagc gcttcatgtt tgtcttcgac ctcgacatcc
     7141 tgaacctctt caacgaggac aacgtgctcg gggtcttcga caacatcagc ggcttcaact
     7201 tctctggcga ggagatcggc ctgtcgtccg actccattca ggccggcggt gacttccagc
     7261 ggataccgac gctcgaccgc atccgcgcga tcatcaacga cccggacgag ggcggcggcc
     7321 ccgacgagcg ctacggcctc gccaactcct tccaggcggg ccgcagcgtc cgcctcgggt
     7381 tccggttcat tttctaaggc ggcggcggct tctcgcccgc ctaaacccga aagcccatcc
     7441 gtcccggacg gatgggcttt cttttacccc gcgtttgaag gcgccggttt tacctcggcg
     7501 ccgggcctct agcgcgcggc cgccttctcc ctcaactgca ttatcagcaa cctgatcttg
     7561 tcggcgtcgc gcgcgtcccg ctggtgcttc aggaaaagct ccagctcgtc ggcggcctct
     7621 ccgtagcgct tctgctcgct gtaaacctcg gccagccgca tgtgcacctc cggcactttg
     7681 ccgttcgaga gctttttggc gcgcgcgagc gccgcttcgg cctgcgggag cttcccggct
     7741 ttttttagcg cgacgcccag ccacatgtgg ccgttcacgg acttgtcgta gagcctgacg
     7801 gcacgctgaa aattctcgac ggcctcgccg gtcatcccca ggttgtactg cgcgaagccg
     7861 agcccgaacg cgctcgaata gctgccgggg ttcacggcca cggccctcgt gaggaggacg
     7921 cgcgccgcct cgaagtaggc cgggttggag ttgccgcgca ctgcgtactc cgtccccagg
     7981 cggtcgaggg cggcgaagta gtcggggaag gcgtcgagcg cgcccttcag gctctcgaag
     8041 ccctctctat cctttttcgc gcgcagctcg gcgacgcccc gctcgtagag cctgcgggcc
     8101 gcctccggca cctcctgggc gaagaccgtg ccgggggctg cgaaggggcc cgcgctcaac
     8161 tccggcctca gccgcaggta gaaatccttc tgctggattt cgctcccggt gccgcccccc
     8221 cgcgccgaga cgttcgagat gatgacttcc tgcgcctgct cggcgtagtc agtcccgtag
     8281 ggcagcaccc tcacacggaa gcgcccctcg gggagggacg cgaactcgta gcggcccgac
     8341 gagttcgtcc tggtgcggtt gacggtcacg ccgaggtcgt cgagcagctc gacgaacacg
     8401 tccgagagcg ggagccgcga ctcgccgaag acgtggccca tgatgacgtt gcggcgggac
     8461 tgctgggcgg cgccggcgag gggcgcggcg gcggcgaaga cgagagcaag gccgagcgcg
     8521 agacgaacgc ctcttatcat gagcacctcc ggcgcggggg gagtttcgcg cgaagttttc
     8581 tgcggcgacc tctcagactt cgaccccgcg gctgccgaag aactgtttga gggcggggta
     8641 aacgtcttcc ttgtcgtcaa tgcggacgcc gatgaagcgc cccttctgct tgaggcggtc
     8701 gttgaagatg gagagcagcg cgcccgaaga gcgccggtag cctccgcccc cctcctcgcc
     8761 gatctcgccg tagccgaaga ggttgcaggt cttgatgagc tcgtcggcga gccggacggc
     8821 ctcctcgttg tccgagtagt agttgtcgcc gtcggagaag tggaaggggt atatgttcca
     8881 gtcgcgcggc gggtagcgct gcgcgataac gtccagggcg agctggtagg cggaggagac
     8941 gacggtgccg cccgactcgc cctgcgtgaa gaactgctcc tccgtcacct ccctcgcctc
     9001 cgtgtggtga gagatgaaga cgatctccac gttgtcgtac ttggtgcgca ggaatcgaac
     9061 catccagaag aagaaggagc gcgcgatgta cttcttgaac tcgcccatcg agccggagac
     9121 gtccatgagc gccagcacga ccgcgttcga ctcgtagcga ttctcctcct cccagctctt
     9181 gaagcgcatg tcctccttgc ggacgccgcc gaagcgcggc tcgcgcgcct cgcgcgcgtt
     9241 gcgcttgatg ttctccatta tcatccgccg cttgtccagg ttcgagaaga cgccggtgcg
     9301 gcggatctcg ttgaagcgcg tcgtcttcga cggcacggcc ctcttggcct tctcctcgag
     9361 gaaggggagc tgcaagtcct cgaagatgag ggcggcgagc tcgtcaatat caacttcggc
     9421 gtcgtagtac tcggcgcccg cgccctggcc ggcgggcccc tgcccgcggc ccgcgccctg
     9481 gccgggctgc ccctcgcgcg cgatcacgtc gccgacgcgc gtgcggccgt cgcccgtgcc
     9541 gacgtgcttg cgcttccggt ggtcgaagcg gaacttgtac tcgtcgagcg agcggatggg
     9601 gactttgacc gtgcggcgcc cgtcggagag gatgatggcc tcgttcgaga ctatcgagcc
     9661 gaggttcttc ctgatggcct ccttgacgcg ctccttgtgg cgctcctggt caatgatgcc
     9721 cttgcgctgc agagaccagt cgttgcgctg gatcgtccct gagatttgcg agtcgttcgt
     9781 catcgtaatc tctcgccgca gcctccaagc ggaacgcccg cgcttcacac cgaagcgcgg
     9841 gcgattcact gaccgacttc acctgcccgc gccgattagc gggagaggag cgtgccgacg
     9901 taggtcagca gctcgttggc gcagacgggg cagtagccgt gctccttaac gagccggtca
     9961 acgacctcgt tgatgcgccg cagctggtcg ggatcgggcg tcttggccga ggtcgttatc
    10021 ttcaccacgt ccttgaggtc ggcgaaaatc ttcttctcga tggcctcctt caggcgctcg
    10081 tgcgaggtgt gctcgaactg cttgcccttg cgcgcgtagg aagaaatcct gatgagaatc
    10141 tcctggcgga aggtgttctt ggcgttctcg ctgacgccta tctgctcctc gatggagcgc
    10201 atcaggggct cgtcgggctc catctcctcc tcggtgatgg ggtctttcat cttctccttg
    10261 ttgcagtatg cctcgacgtt gtcgaggtag ttgttgcaca tcgtgcgcgc catctcctcg
    10321 aacgaataga cgaaggcgcg ctgcacctcg gtcttcgcca tctcgtcgta ctccttgcgg
    10381 gccgccgaga tgaggttcag gtagcgctcg cgctggtcgg gcgtaatccc cgtgtgctgc
    10441 tcgaagccgt ccttgatggc gcgcagggcg tctatggggt tgatgcaggt gacgccgtcc
    10501 cggacgagcg ccgtggagag gcggttgatg atgtagcggg gcgagatgcc gtccatgccc
    10561 tcgcggacgg cctcgtcctt gagctcgcgc acgtccttcg acttgtagcc ctcgacgtcc
    10621 tcgccgtcgt agagcttcat cttcttgacg atgtcaacgt tggcgcgctt cggctcttcg
    10681 aggcgcgtca tgacggcgaa catggcggcg actttgagcg cgttcggcgc gatgtggacg
    10741 ttgcggagca cgtccgactg cttgagtagc ttgtcgtaga ttcgctcctc ctgcgagacg
    10801 cgcaggttgt aggggacgcg cacaaggatg atgcggtcct ggagcgcctc ggacttgcgg
    10861 ttgccggcga acgcgacgta ctcgttctcg ttcgtgtgcg agaggatgac ctcgtcggcg
    10921 tagatcatgg cgaagcggcc cgtcttgatc gactgctcct gcgacagcgt gagaaggttg
    10981 tacaaaaact tctcgtcgca cttgagcatc tcgatgaact ccatgacgcc gcggttggcg
    11041 atgttcagct cgccgtcaaa acggtaagcg cgcgggtctg attcgacgcc gacctcgccg
    11101 atggtcgaaa ggtcgatcga gccggtcagc tcggtcacgt cctgcgactt ggggtcggac
    11161 gggctgaagg tgccgatgcc gacgcgctgc ttctcggaga agaggacgcg gtggacgcgc
    11221 acgtcctcgt ggcggccgcc gtaggtgtgc
//
LOCUS       DASPKR010000054        18578 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1430679, whole genome shotgun sequence.
ACCESSION   DASPKR010000054 DASPKR010000000
VERSION     DASPKR010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 18578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18578)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18578
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1430679"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..354
                     /locus_tag="VD968_01595"
     CDS             <1..354
                     /locus_tag="VD968_01595"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HYE13115.1"
                     /translation="RKRRLTLAGESKPLVITHKPSAVYTREARRAGHSGTVRLNVKFG
                     PDGKVMTVEPLREQPYGLTMSAVKAAFDIEFTPAVEGGKPVPATRVIEYDFPSEQTVD
                     EASGVVDYTAPSARR"
     gene            367..1188
                     /locus_tag="VD968_01600"
     CDS             367..1188
                     /locus_tag="VD968_01600"
                     /inference="COORDINATES: protein motif:HMM:NF012804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HYE13116.1"
                     /translation="MDEQTARREIVRVGRLMYERSYVVSSDGNVSVRLGDDRVLATPT
                     QVNKGRMTEEMLAVTDLEGKALNDRRASSELAMHLLIYRERPEVRAVCHAHPPHGSAF
                     AVAGLAIDQPILSEVILTLGCVPLAEYGTPSTDELTDAMRPLVKHHNALLMANHGAVA
                     YGTDLWQAFDRLETLEHTAKIAILARALGGARDLPPGSVEKLIDIRERAGYLDERGRC
                     QACGYLHETQVVCRTGDRPPAPRASANGSGKISLTREELIELLSQAARTGAAGDF"
     gene            1225..1509
                     /gene="eutM"
                     /locus_tag="VD968_01605"
     CDS             1225..1509
                     /gene="eutM"
                     /locus_tag="VD968_01605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutM"
                     /protein_id="HYE13117.1"
                     /translation="MPQEALGMVETKGLVAMIEAADAMVKAANVTLVGYEKIGAGFVT
                     AIVRGDVAAVKAATDAGAAAARRVGELVSVHVIPRPHGSVDDALPVGSDR"
     gene            1517..1789
                     /locus_tag="VD968_01610"
     CDS             1517..1789
                     /locus_tag="VD968_01610"
                     /inference="COORDINATES: protein motif:HMM:NF015289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HYE13118.1"
                     /translation="MIIARILGTVVATQKDERLKGNKLLLVRPLNLDGSDGSGYVVAV
                     DTVGAGYHERVLVVAGSSARLAEGMKDRPVDAAIIGVVDTVDFIND"
     gene            1793..2077
                     /locus_tag="VD968_01615"
     CDS             1793..2077
                     /locus_tag="VD968_01615"
                     /inference="COORDINATES: protein motif:HMM:NF015289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HYE13119.1"
                     /translation="MQLARVIGNVVATVKNDSLEGRKLLVVQSLNAGLEPQGQPMVAL
                     DAIGAGVGELVFWCRGKEASFPFRREDTPTDCTVVAIVDSDGHVTRGGRK"
     gene            2074..2361
                     /locus_tag="VD968_01620"
     CDS             2074..2361
                     /locus_tag="VD968_01620"
                     /inference="COORDINATES: protein motif:HMM:NF015289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HYE13120.1"
                     /translation="MILARVLGNVVATQKNERYAGARVMLCQPVTPSGEEVGATLLAL
                     DSVDAGVGDVVIIVQEGWGASTAATGEQGAAIDSAIVGVVDRVDLLEDEKA"
     gene            2376..2804
                     /locus_tag="VD968_01625"
     CDS             2376..2804
                     /locus_tag="VD968_01625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13121.1"
                     /translation="MSGEQDKVRELAERVARRLSGGAGRQEGSGDAAEGGGGELADLR
                     RSLSEIQARLTHIESHITHDGRREETPERQAPRQPAAGSTWLSGTYVPAVSHPSQEQF
                     GGIGEAVSELVDFFESEKTCQMEPGGKPCDHCGVCSSRGF"
     gene            complement(2888..3538)
                     /locus_tag="VD968_01630"
     CDS             complement(2888..3538)
                     /locus_tag="VD968_01630"
                     /inference="COORDINATES: protein motif:HMM:NF015944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HYE13122.1"
                     /translation="MNKRRIALLAAVAFVTLTTSGCGYNTLVEKQQAVRGKWADVESR
                     LQRRADLIPNLFEAAKAAGVQEQEVFGQIAEARSRLLNATAAPPQGEGGDRSPEQRQE
                     IINAANTFGGTIGRLLSLQEAYPTLQSNQAFMNFQHELAGTENRINVAREDYNAAVTD
                     YNTARNRFPMVIAAKMYGFKDEPLFKAEEGARQAPQINAESLRRNQGGQQGTTNAR"
     gene            complement(3598..4341)
                     /locus_tag="VD968_01635"
     CDS             complement(3598..4341)
                     /locus_tag="VD968_01635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13123.1"
                     /translation="MANRVAQEAFNHLVGDLRATHGENLASVVLYGSAAAGDFVQLQS
                     DYNILIALHRITPEDLKMAHAPAREWRRLGHPLPVYFTFAELREAADVFPIEFHQMER
                     ARVVLYGRDPFDDFSFSDVNLRHQTEYELRSKLLQLRRLYIPASDSAGRLRDLMCDSL
                     ASFATLFAPVLMLHGAEPPVLKQDVVAATARLLGLDGATFERIFELRARGDGAELGEG
                     EADALFASYMEQIEAVIAAVDRVEVARGA"
     gene            complement(4418..5359)
                     /locus_tag="VD968_01640"
     CDS             complement(4418..5359)
                     /locus_tag="VD968_01640"
                     /inference="COORDINATES: protein motif:HMM:NF016424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HYE13124.1"
                     /translation="MTTTHRQRSFRAARWPAILLLLAFAAAAARAQSPRAYSESPLPS
                     PTGYVNDYANVIDPATKQRLETMLTNLKERADIEFAVVTVGTTGGTPIFDYALSVARG
                     WGIGSKEGEKAGGLFLVAAQDRKYYTQVSRHLEGDLPDGLLGEIQRTRFVPRAREGNY
                     SQGISDTMETYVATLAEKRGFQVEGIDQSRAYRETRRPTRTTGTSPTRSSLNAGACCC
                     IGAVVLIILLSVFSGRGRGGRGGRGRGGWGGGGGLLNALLLANVLSSLGGGGRRSSSG
                     WGGFGGGGGGSGWGGGGGFGGFGGGGDFGGGGAGGDW"
     gene            complement(5430..6221)
                     /locus_tag="VD968_01645"
     CDS             complement(5430..6221)
                     /locus_tag="VD968_01645"
                     /inference="COORDINATES: protein motif:HMM:NF014582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HYE13125.1"
                     /translation="MNFGELLLFGGLVALANVCGGLMLARPGTFERSKRLLRYLVALG
                     AGFMLAAIFIEILPEVVGLWAGAGASREEAAHGVLGAMTLLLGGYLLIHFFEHTIAPH
                     FHFGEETHPEAVVRPSAAYTAIGGLSIHTFFDGASVASAFVVDRKAGLLVFVAVLLHK
                     VPEGFTAASIILASGRTARRALAATLIIGAATLAGVLSVAVLQSRVTEAVVYALPFSA
                     GVTLYVAASDLIPEVNHLEEKNPLVSLVVFVGVALFYLLHLLIGG"
     gene            6531..6974
                     /locus_tag="VD968_01650"
     CDS             6531..6974
                     /locus_tag="VD968_01650"
                     /inference="COORDINATES: protein motif:HMM:NF014439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13126.1"
                     /translation="MLRGNYTARIDEKGRLKIPTTFRRYLEEKYATTEFYVTSLTGEC
                     ARIYPMPEWESIEQRLALLPSMDPARRKFLDRANYYGQQATMDAQGRVLIHPLLRRSA
                     GVLGDVAVLGYLTYLEVWELERFERRLQSDPYTEEDEASIARLGI"
     gene            7107..8021
                     /gene="rsmH"
                     /locus_tag="VD968_01655"
     CDS             7107..8021
                     /gene="rsmH"
                     /locus_tag="VD968_01655"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: protein motif:HMM:TIGR00006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HYE13127.1"
                     /translation="MLLTEAVRLLAPERGGLFVDATLGLGGHSEAILEASPEARVLGI
                     DRDREALRLAGERLARFGTRFRPAYGNFRDIRRLMSEAGEAEASGVLADLGVSSLQFD
                     TPERGFSFRHDAPLDMRMDTSGGEETAAELLRRLPEDEIARVIYEYGEERRSRRIARW
                     IVERRERGEPVETTAELAELVARAVGHKRSDKIHPATRTFQALRIAVNGELEGLGEFL
                     ETAVGLLQTQGRLAVISFHSLEDRVVKRAFRRLAGQCECGPRAPVCSCGARREVEILT
                     RRPVVPGGREVEENPRARSAKLRACLKL"
     gene            8139..8537
                     /locus_tag="VD968_01660"
     CDS             8139..8537
                     /locus_tag="VD968_01660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13128.1"
                     /translation="MRRMPQQYPNPYVTRGRDPRAARRQAILLASCLVLAAGFVSAVR
                     QQIVAVEYGYKTEELRRERERLLDEQQRLRLALEETTSPAHLGAAARARGMQLPRAGQ
                     LGAPARIEGGEHARPGALVGTAAAAAVAAR"
     gene            8631..10625
                     /locus_tag="VD968_01665"
     CDS             8631..10625
                     /locus_tag="VD968_01665"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HYE13129.1"
                     /translation="MVAVFLCAWMVLIGARLTYLQTFGHEWLRERAAKQQSGFEAASA
                     PRGLILDRRGRELARSVDVDSFFADPSKVESPDEAAAALSRALGTDEGALAARLREAK
                     ERGQPFVWLARRVSDEQSRAVRALDIKGVHSMQEPKRRYPAGPLAAHVVGFAGVDGGL
                     AGVEWAYDSTLKGESQKIFFDADARRRAFESRGEGPRPGRTVVLTIDQNVQYLVEQTL
                     SAAVERARAKSGAAIVLDPRTGEILALANAPAFDPNDASSATPESRRNDALQNIYEPG
                     STFKVVAYAGALEDKRTRPDEPIDCLGGGITVAGRFIRDHTPYGTLTTTEALAKSSNV
                     AAIKLGIRLGNERMYEYMRRFGFGAKTGVELPGETQGLLRQVKNWHGSSIGSLAIGQE
                     IGVTPVQMAAAYAAIANDGVRVAPHIVKEIRDHEGNVVELARPASERVVSAETAQTLR
                     RMLEMVTLKGTAKRAQLEGYTAAGKTGTAQKIDPKTRGYSKTKHVASFVGFAPVERPA
                     AVIIVVVDEPVGAYHGGDVAAPVFREIADQILPYLEVGPDQSPSEEAAPAGQLAASPQ
                     PRATAPAVEEGAAVVAVSLPEVVLRGGDGEVVYAAAGESALLMPDLRGRSVRDAALVC
                     ERLGLDLEAVGEGRAVRQSPSAGETVEAGQTVRIEFGRSD"
     gene            11056..12531
                     /gene="murF"
                     /locus_tag="VD968_01670"
     CDS             11056..12531
                     /gene="murF"
                     /locus_tag="VD968_01670"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR01143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HYE13130.1"
                     /translation="MRVRQAAEFMRAPGGARGKVFDKEIKGFSIDSRATREGELFFAL
                     SPEDYRRHCFTATSFADAHRFVPEALAQGAVAAVVRAERAGADEELRPLRDRLLPVDD
                     VIEALQLVARGVIDGWGGPVVGITGSAGKTTTKDLTAHVLGSTGRRALRSRKNFNNEL
                     GVALSVLQMESGGARPEEFDVAVLEMGMSVPGEIARHCRVAPPDVAVLTLVAPVHLEF
                     MGSVEAIAEGKAQLVEGMKPGGTAVLNADDERVLAMRAKAAHAGRVITYGLAEAADVR
                     AVGVETAGVGASRFVLKTPDGEAEVLLPMHGRHNVSNALAAAAAAVSFGVSVGQIAEA
                     LATAAPSEMRGEVLRFSEGFTVVDDSYNSNPRSLLSMAEAVAQGGEGVKRRVVVAGEM
                     LELGEEGAALHRAAGREIAGFGVDVLWGVRGLARELVEGARSAGMSYSATQFFDSSEA
                     AAEALAEFVRAGDLVLVKGSRGVHTERVVEVLRERYGLKKG"
     gene            12528..13688
                     /gene="mraY"
                     /locus_tag="VD968_01675"
     CDS             12528..13688
                     /gene="mraY"
                     /locus_tag="VD968_01675"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HYE13131.1"
                     /translation="MIYHIFYEWLFKALSATSGGESYFVKALNVFQYVTFRTAYAAIT
                     ALLISLVFGGRVIEALRRLKVGQEIREEGPQAHQAKRGTPTMGGVLIIGSVLISTLLW
                     ARLNSLYVWIILLATTAFAVIGFIDDYQKVAKKQSLGLTGRKKLAGQLAIALGVWGAL
                     FFFTYIGWADYSWKLGLPFFKRTALENITNIGPVVYLLFIAVVLLGFSNAVNLTDGLD
                     GLAISVTVIAMATLTAFTYVSGDARWADYLGLEHQKDIGELTVFCGAMVGASLGFLWF
                     NAPPAEVFMGDVGSLAIGGAVGTIGVLTKQELILVLIGGVYVVEALSVTLQVSFFKMT
                     KRSTGTGRRLFKMTPLHHHFEMSGWKEPKIVFRFLIIAILFALLSLSTLKLR"
     gene            13698..15110
                     /gene="murD"
                     /locus_tag="VD968_01680"
     CDS             13698..15110
                     /gene="murD"
                     /locus_tag="VD968_01680"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HYE13132.1"
                     /translation="MELDGKKVLVIGAARSGVAAARFLAARGALVVLNDRKEFIDWPN
                     EALALKSEGVVKLLAGEMPSWLLDQVELVVLSPGVPLKSIPVRYADRAGAEVIGEVEL
                     AWRFLRGRVVGITGTNGKTTTTTLVGELLKDAGVPAQVGGNIGTPLVSLVEASREDGW
                     TVAELSSYQLETISEFRPTVAVVLNLMPDHMDRYETFADYGAAKHRIFRNQTESDVAI
                     LNADDAVVSSWARGLRAHVVLFSTERELEEGLFLRGRELVSRTRDGERVILTRDDMQL
                     KGLHNVQNVLAALAAGLACGASPESMRETVRRFAPVEHRLERVAEVGGVTFYNDSKAT
                     NVDAAVKAVEALAEEPGRIVLILGGRGKNAPYAPLAPLVERKGRALVLIGEDADRIES
                     ELKSFAPVERAADMADAVRRAFAAAEPGDTVLLAPACASFDMFTSYEHRGRVFKEEVR
                     SIQQSAPGGRQESAALNAKG"
     gene            15142..16245
                     /gene="ftsW"
                     /locus_tag="VD968_01685"
     CDS             15142..16245
                     /gene="ftsW"
                     /locus_tag="VD968_01685"
                     /inference="COORDINATES: protein motif:HMM:TIGR02614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HYE13133.1"
                     /translation="MARKLQADEWLFAGVLALAMFGVVMVYSASAVVALSENQSQYYY
                     VKRQAIWTLIGLGAMWLGMRLDYRKLKGGGVAYGLLLVTAVLLLAVFAFPPINGARRW
                     IRFAGFSMQPSEMAKLALAVFLARFLERRAGEEGSFFKTFLPCSAVTGALALLVVAEP
                     DLGTAMMLVVICFVILFTAGARLRHLALAAAPALVALAGLLLFVPWRLKRMVTFLNPW
                     ADPQGAGYQVVQSLLAVGSGGVHGLGFTEGRQKMFFLPFAHSDFIFAVVGEELGLFGA
                     LGVVALFALFLWRGLRAAVRAPDRFGMLLGVGVVTGIVAQALFNMSVVLSLVPTKGIP
                     LPFVSYGGSSLVPTLFAAGVLLNISQHARFELR"
     gene            16251..17342
                     /gene="murG"
                     /locus_tag="VD968_01690"
     CDS             16251..17342
                     /gene="murG"
                     /locus_tag="VD968_01690"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: protein motif:HMM:TIGR01133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HYE13134.1"
                     /translation="MRVLIAAGGTGGHIYPGIAVAKEVMRRDPQSAVRFVGTARGLET
                     RLVPQAGFELSLIESAGLVNMGLAARLRGLMILPKSFVGARRLVKEFRPDVVAGAGGY
                     VSGPVLLTAALMKVPTLVMESNAVPGFTNRRLARFVDAAAVSFEAALPYFGGKGVVTG
                     NPVRREFFEAPPKKRDPTRFSLLVFGGSQGARAVNEAVVSALPHLAAYADVLRVTHQT
                     GKLDFERVRGAYEAAGWAERADVREYIDDMVAAFSSADLIVSRAGATTSFELMAAGKA
                     ALMVPLPGQLEQRRNAEVMQEAGAARMILQEELSGERLAREIGALVADPDSVTRMEEA
                     ARRLARGDAAKATVDLIEKLVSNQRSAVG"
     gene            17385..>18578
                     /gene="murC"
                     /locus_tag="VD968_01695"
     CDS             17385..>18578
                     /gene="murC"
                     /locus_tag="VD968_01695"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR01082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HYE13135.1"
                     /translation="MFRRIQHVHFVGIGGIGMSGIAEVLSNMGFRVSGSDLRRSDVTA
                     RLEERGVQIFEGHAAENVGDAHVVVRSTAVRDDNPEVVEARRRSVPVIPRAEMLGELM
                     RLKPHTVAVAGSHGKTTTTSMIATVLAHANLDPTVVVGGVVGAMGSNARLGKSDLMVV
                     EADESDRSFLMLTPTFAVVTNIDREHMDHYADMTDVRKCFADFVNKVPFYGASVLCLD
                     DPHVQAVIPEVVRRRVTYGLSAQADIAAREVRYDRQFGSVYQARLMGEPVGEVSLRVP
                     GLHNIYNSLAAIAIGLELEVPFATIAKALGEFTGVNRRFQFKGEAAGVIVVDDYGHHP
                     TEIRATLVAAKLGSAGRRMVVLFQPHRYTRTQDLMDEFARSFNNADVLMVTDIYAASE
                     RPIEGV"
BASE COUNT         3114 a         5949 c         6503 g         3012 t
ORIGIN      
        1 cgcaagcgcc ggctgacgct cgcgggcgag tcgaagccgc tcgtcatcac gcacaagccg
       61 agcgccgtct atacgcgcga ggcccggcgc gccggccact cggggactgt gcgccttaac
      121 gtcaagttcg gccccgacgg caaagtcatg accgtcgagc cgttgcgcga gcagccctac
      181 ggcctgacca tgtcggccgt gaaggccgcc ttcgacatag agttcacgcc cgccgtggag
      241 gggggcaagc ctgttcccgc gacgcgcgtc atcgagtacg acttcccgag cgagcagacc
      301 gttgacgagg cctccggcgt ggtggattac accgcgccgt cggcccgacg ttagttccca
      361 attttgatgg acgagcagac agcccggcgc gagatagtcc gcgtcggcag gctcatgtac
      421 gagcgctcct acgtcgtctc ctccgacggc aacgtaagcg tgcgcctcgg cgacgaccgc
      481 gtgctggcga cgcccacgca ggtcaacaag gggcgcatga ccgaggagat gctcgccgtc
      541 acggacctcg agggcaaggc gctcaacgac cgccgcgctt cgtccgagct cgcgatgcac
      601 ctgctcatct accgcgagcg ccccgaagtg cgcgccgtat gccacgcgca cccgccgcac
      661 ggctcggcct tcgccgtcgc gggcctcgcg attgaccagc ctatactctc cgaggtcata
      721 ctgacgctcg gctgcgtccc gctggccgag tacggcacgc cctcgaccga cgagctgacc
      781 gatgcgatgc gcccgctcgt caagcaccac aacgccctgc tcatggcgaa ccacggcgcc
      841 gtcgcctacg gcacggattt gtggcaggct ttcgaccgcc tcgaaacctt agagcacacg
      901 gcgaagatag cgatactcgc ccgcgccctg ggcggcgcgc gcgacctgcc gcccggctcc
      961 gtagagaagc tgattgacat acgcgagcga gcgggctacc tggacgagcg cggccgctgc
     1021 caggcgtgcg gctacctgca cgagacgcag gtcgtctgcc ggacgggaga caggccgccc
     1081 gcgccgaggg cttcggccaa cggctcaggc aagattagcc ttacgcgcga ggagttgatt
     1141 gagctgctca gccaggctgc gcgcacgggc gcggcggggg atttttaagg gtctatcgaa
     1201 tcaacgagag aagaggagaa gcgaatgcct caagaagcgt tagggatggt cgagaccaaa
     1261 gggctcgtgg cgatgataga ggccgcggac gcgatggtta aggcggcgaa cgtcacgctc
     1321 gtcggctacg agaagatagg cgcgggcttc gtcacggcca tcgtgcgcgg cgacgttgcg
     1381 gccgtcaagg cggcgaccga cgcgggcgcg gctgccgcac gccgcgtcgg cgagctcgtc
     1441 agcgtgcacg tcatcccgcg cccccacggc agcgtggacg acgccctgcc cgtcggctcg
     1501 gacagataag gaagtaatga tcatcgcgcg catcctcggc acggtcgtcg cgacgcagaa
     1561 ggacgagcgc ctgaagggca acaagctcct gctcgtgcgg cctttgaacc tcgacggctc
     1621 ggacggctcg ggctacgtcg tagccgttga caccgtcggc gccggctacc acgagcgcgt
     1681 gctcgtcgtc gcgggctcga gcgcacgcct cgccgagggc atgaaggaca ggcccgttga
     1741 cgccgccatc atcggcgtcg tggacaccgt tgatttcatc aacgactgac gtatgcagct
     1801 cgcgcgcgtt atcggtaacg tggtggcgac ggtgaagaac gactcgctcg aagggcggaa
     1861 gcttctggtc gtgcagtctc tgaacgcggg gctagagccg caggggcagc cgatggttgc
     1921 gctcgacgcc ataggcgcgg gcgtgggcga gctcgtgttc tggtgccggg gcaaggaggc
     1981 gagcttcccc ttcaggcgcg aggacacgcc gaccgactgc accgtcgtcg ccatcgttga
     2041 ctcggacggc cacgtgaccc gcggggggcg gaagtgatac tcgcgcgcgt gctcggcaac
     2101 gtcgtagcga cgcagaagaa cgagcgctac gcgggcgcgc gcgtgatgct ctgccagccg
     2161 gtgacgccct cgggcgagga ggtgggcgcg acgctgctcg ccctcgactc tgtggacgcg
     2221 ggcgtgggcg acgtggtgat aatcgtgcag gagggctggg gcgcctcgac cgccgcgacg
     2281 ggcgagcagg gcgcggccat tgactcggca atcgtcggcg tcgttgaccg cgttgatctt
     2341 ctggaagacg agaaagcctg agtgactttc agcgaatgag cggcgagcag gacaaagtgc
     2401 gtgagctggc cgagcgcgtg gcgcgtaggc tttcgggcgg cgcgggacgc caggaaggct
     2461 cgggcgacgc ggccgaaggc ggcggcgggg agctggccga cctgcgccgg agcctttcgg
     2521 agatacaggc gcggctcacg cacattgagt cgcacatcac gcacgacggc cggcgcgaag
     2581 agacgcccga acggcaagcc cctcgtcaac ccgccgcggg ctcgacgtgg ctgagtggca
     2641 cttacgtccc ggccgtctcg cacccgagcc aggagcagtt cggcggcatt ggcgaggccg
     2701 tctccgagct ggttgacttc ttcgagagcg agaagacctg ccagatggag cccggcggca
     2761 agccctgcga ccactgcggc gtgtgcagct cccgcggctt ttaaccttga tgacagaaac
     2821 gcgggagggg cggtcagcta cttgaccgcc cctcccgcgt tttaaagagt cgcgcgtcgc
     2881 cgccgcccta tcgcgcgtta gtcgtcccct gctggccgcc ctggttgcga cgtagcgact
     2941 ccgcatttat ctgcggcgcc tgacgcgcgc cctcttcggc cttgaagagg ggctcgtcct
     3001 tgaagccgta catcttcgcc gctatcacca tagggaacct gttgcgcgcg gtgttgtagt
     3061 cggtgaccgc cgcgttgtag tcctcgcgcg cgacgttgat gcggttctca gtccccgcca
     3121 gttcgtgctg gaagttcatg aaagcctggt tcgactgcaa cgtcgggtag gcctcctgca
     3181 gcgagagcag ccggccgatg gtgccgccga aggtgttagc cgcgtttatg atctcctgcc
     3241 tctgctcagg cgacctgtcg ccgccctcgc cctgcggcgg cgcggccgtc gcgttcagca
     3301 gtcgcgagcg cgcctcggct atctgcccga agacctcctg ctcctgcacg cccgcggcct
     3361 tcgccgcctc gaacaaattc ggtatcaggt cggccctgcg ttgcagcctg ctctccacgt
     3421 cggcccactt gccgcgcacg gcctgctgtt tctcgaccag agtgttgtag ccgcacccgc
     3481 tggtcgtcag cgtaacgaac gccacggcgg ccagcagtgc tatccttctt ttattcatca
     3541 tcatcctccc aaaaactcag cccgtaaaac tttaccctcc gaccactgac tctaaaccta
     3601 agcgccgcgc gcgacctcca cgcggtcaac cgcggcgatg acggcctcga tctgctccat
     3661 gtaggaggcg aagagcgcgt cggcctcgcc ctcgcccagc tccgcgccgt cgccgcgcgc
     3721 gcgcagctcg aatatgcgct cgaacgtcgc gccgtccagc cccagcagcc gcgccgtcgc
     3781 cgcgaccacg tcctgcttga gcacgggcgg ctccgcgccg tgcagcatga gcaccggcgc
     3841 gaacagcgtg gcgaagctcg cgaggctgtc gcacatcaga tcgcgcaggc gcccggccga
     3901 atcggacgcg ggtatgtaga ggcgtcttag ctgcaagagc ttgctgcgca actcgtactc
     3961 ggtctgatgg cgcaggttca cgtccgagaa gctgaagtca tcgaacgggt ctcggccgta
     4021 gagcacgacg cgcgcccgct ccatctggtg gaactctatg gggaaaacgt cggccgcctc
     4081 cctcagctcc gcgaaggtga aatagaccgg cagcgggtgc ccgagcctcc gccactcgcg
     4141 cgccggcgcg tgcgccatct tcaaatcctc aggagtgatg cggtgcagcg cgataagtat
     4201 gttgtagtcc gactgcaact gcacgaagtc gcccgcggcc gcagacccgt agagcacgac
     4261 cgacgcgagg ttctcaccgt gcgtcgcgcg caggtcgccg acgaggtggt tgaaagcctc
     4321 ttgcgcaact ctgttcgcca tcagcaactc cgatacgttg agccacaaac ctcgggcgcg
     4381 tgactgcgga acggcgcgcc cttcatcgtc gtcaaattta ccagtcgcct ccggctccgc
     4441 cgccgccgaa gtcgcctccg ccgccgaagc ccccgaagcc gcctccgccg ccccaacccg
     4501 agccgcctcc cccgccgccg aagccgcccc agccgctaga gcttctgcga ccgccgcccc
     4561 cgaggctgct caagacgttc gcgagcagca gcgcgttcag aagacccccg cctccgcccc
     4621 agccgccgcg cccgcgccct ccgcgaccgc cccggcccct gccggagaag acggagagga
     4681 gaattataag aaccactgcg cctatgcagc agcaagcgcc cgcgttcagg ctgcttctag
     4741 tcggcgacgt tcccgtcgtg cgagtgggac ggcgcgtctc gcggtaggcg cggctctggt
     4801 caatcccttc gacctgaaag cctcgcttct cggccagcgt cgcgacgtaa gtctccatcg
     4861 tgtcgctgat gccctgcgag tagttgccct ctctggcccg cggcacgaag cgcgtgcgct
     4921 gaatctcccc gagcagcccg tccggcaggt cgccttcgag gtgcctgctg acctgcgtgt
     4981 agtacttacg gtcttgggct gcgaccagga aaagcccgcc cgccttctcg ccttccttcg
     5041 agcctatgcc ccacccgcgc gccacagaca gcgcatagtc gaagatggga gtgccgcccg
     5101 tagtcccaac ggtgacgacc gcgaactcga tgtcggcgcg ctccttcagg ttcgtgagca
     5161 tcgtctccag gcgctgttta gtcgccgggt ctattacgtt cgcgtagtcg ttgacgtagc
     5221 ccgtggggga agggagcggc gactccgagt aagcgcgggg actttgcgcc cgcgccgccg
     5281 cggcggcgaa ggccaggagt aaaaggattg ccggccaccg ggcggcgcgg aaagaacgtt
     5341 ggcggtgcgt cgtcgtcact ttagtaacag ttgggaatta gtacgaaaaa caggccgcaa
     5401 ggttttcata gcaagcagcg cgccggcctt caaccgccga taagcaggtg cagcaggtag
     5461 aaaagcgcga cacccacgaa gactacgagc gagacgagag ggtttttctc ttcgaggtga
     5521 ttgacttccg gtatcaggtc gctggccgcc acgtacaacg tgacgccggc cgagaagggg
     5581 agcgcataga ccacggcctc ggtcacgcgc gactgcaaaa cggctacgct caggactccc
     5641 gcgagcgtag ccgctcctat tattaatgta gccgccaaag ccctgcgcgc cgtccgcccc
     5701 gacgccaaga tgattgaggc agccgtaaac ccctcgggaa ccttgtgcag gagcaccgcg
     5761 acgaagacca aaagccccgc tttacggtca accacgaagg cggaggcgac cgacgccccg
     5821 tcgaaaaagg tgtgaatcga aagcccgccg atggccgtgt aggccgccga agggcgcacg
     5881 accgcctcgg ggtgcgtctc ctcgccgaag tgaaagtgcg gggcgatggt gtgctcaaaa
     5941 aaatggatga gcaggtagcc gcccaaaagg agcgtcatcg cgcccagaac gccgtgagcc
     6001 gcctcctcgc gcgaggcccc cgcgcctgcc cacaaaccca caacttccgg caaaatctca
     6061 ataaaaatgg ccgccagcat aaagccggcg ccgagcgcca ctaagtagcg cagcaggcgt
     6121 ttgctgcgct cgaaggtgcc ggggcgtgcc aacatcaggc cgccgcagac gttcgcgagc
     6181 gccacaaggc cgccgaacaa aaggagttcg ccgaaattca tccgaaattc tgtacgcgcc
     6241 cgacttgtcc tgaatattta cgacttggcc ggcactatac agtaagcccg tccgattggc
     6301 tacggccgag gatgcaggcg aagtgcataa cgggatacac caaatggtgc ttaaaatttt
     6361 caatttgaca gtgtttttgc tcttgacagg cgcttaaggc gggcgtagta ttcgcggcgg
     6421 gtggtcaaaa gtggcggaaa gtgggctgat aagagcagct tgccgtcaat gcttagagtt
     6481 tcactttaag gtttaagcag cccctcgccc cgtccggcgc cgcaaagccc atgttaagag
     6541 gaaattacac ggcgcggata gacgaaaagg ggcgtttgaa aatcccgacc accttcaggc
     6601 gctacttaga agaaaagtac gcgactacag agttctacgt cacgagcctg accggggagt
     6661 gcgcgcgaat atacccgatg ccggagtggg agtccatcga gcagcgactg gctcttctcc
     6721 cctcgatgga cccggcgaga cgtaagttcc ttgacagggc taattactac gggcagcagg
     6781 cgacgatgga cgcgcagggg cgcgtgctca ttcacccgct gctgcgcagg tcggccggcg
     6841 tcctcggcga cgtggccgtg ctcggatatt tgacatattt ggaagtctgg gagttggagc
     6901 gtttcgagcg gcgtcttcag tccgacccct acacggagga ggacgaggct tcgatagcac
     6961 gactcggaat ttgaagaagg tgaagggttt agcggcatga gcggcaagcc gaaggccgga
     7021 actacgaact cgtcactttt cttcgagacc acggggcggt ggtgatggct gcgaccggag
     7081 gggggccggg agcgccccat cgccccgtgt tgctaactga ggccgtaagg cttctggcgc
     7141 ctgagcgcgg cgggctcttc gtggacgcga cgctgggctt gggcggccac agcgaggcaa
     7201 tcttggaagc ctcgcccgaa gcgcgggtgc tcgggattga ccgcgaccgc gaggctttaa
     7261 gactcgcggg ggagcggctg gcgcgtttcg gtacgcgctt ccgcccggcc tacgggaatt
     7321 tccgcgacat ccgacggctc atgtcggagg cgggcgaggc ggaggcgagc ggcgtcctgg
     7381 cagacctggg cgtctcgtcc ttgcagtttg acacgccgga gcggggcttc agcttccggc
     7441 acgacgcccc gctcgacatg aggatggaca cgtcgggcgg tgaggagacg gcggctgaac
     7501 tcctccgccg gctgcccgaa gatgagatcg cccgcgtcat atacgagtac ggggaggagc
     7561 gcaggtcgcg gcgaattgcc cgctggatag ttgaaaggcg cgagaggggc gagcccgtcg
     7621 agacgaccgc cgagcttgcc gagctggtgg cgcgggccgt gggccacaag cgctcggaca
     7681 agattcaccc ggccacgcgg acttttcagg cgctccgcat agccgtcaac ggcgaactcg
     7741 aaggcttggg ggaatttttg gagacggccg tcggtctttt acaaacgcag gggcgcctcg
     7801 ccgtcataag cttccactcg ctggaggatc gtgtcgtcaa gcgggctttc aggcggctcg
     7861 ccggccagtg tgaatgcggc ccgcgcgcgc ccgtctgctc ctgcggggcg cggcgcgagg
     7921 tcgagattct gacgcgcagg cccgtcgtcc ccggcgggcg ggaggtggaa gagaacccgc
     7981 gcgcgcggag tgccaaactg cgcgcctgtt tgaaactgtg agaacccctc aagaaggccg
     8041 ggctttaagg acgcctgtct gaaagtcgcc cggccccgct cccggtcttt cgcgagaccc
     8101 atccacctta cttcgccgaa cgacgaggcc cgatatagat gagaagaatg ccccagcagt
     8161 acccgaaccc ctacgtcacg cgcgggcgcg acccgcgcgc cgcgcgccgg caggcgatac
     8221 tgctcgcgag ctgcctcgtg ctcgccgcgg gcttcgtctc cgccgtgcgg cagcagatag
     8281 tcgcagtaga gtacggctac aagaccgagg agcttcggcg cgagcgcgag cggctcctcg
     8341 acgagcagca gcggctgcgg ctcgcgctcg aagagactac gtcgccggcg cacctgggcg
     8401 cggcggcgcg cgctcgcggg atgcagttgc cgcgcgccgg gcagctcggg gcgcccgcgc
     8461 gaatcgaggg cggggagcac gcgcgccccg gcgccctcgt aggcacggcc gccgcggcgg
     8521 cggtcgctgc acgctaggcg gggagtttta gaaggccgcc gtccgttatg cttgaacgaa
     8581 acggctcagt cagaaactta cgtcccgaca cttcacggcg gcgtgctctg gtggtcgccg
     8641 tttttctttg cgcgtggatg gttctcatcg gcgcgcgcct cacctacctt caaacgttcg
     8701 gccacgagtg gctaagggag cgcgccgcga agcagcagtc gggcttcgaa gcggctagcg
     8761 caccgcgcgg gctgatactc gaccgccgcg ggcgcgagct tgcgcgcagc gttgacgttg
     8821 actcgttctt cgccgacccc tctaaggtcg agagcccgga cgaggcggcg gcagcgctct
     8881 cgcgcgcgct cggcacggac gagggcgctt tggccgcgcg gctcagggag gcgaaggaga
     8941 gggggcagcc gttcgtctgg ttggcgcgca gggtgagtga tgaacagtcg agggccgtgc
     9001 gcgctcttga catcaagggc gtccactcga tgcaggagcc gaagcggcgc tacccggccg
     9061 ggccgctcgc ggcgcacgtc gtcgggttcg ccggtgttga cggcgggctc gccggggtcg
     9121 agtgggctta cgactcgacg ctcaagggcg agtcgcagaa gatcttcttc gacgccgacg
     9181 cgcgccgcag ggctttcgag agccgcggcg aggggcctcg gcccggccgc acggtcgtgc
     9241 tcacgattga ccagaacgtg cagtacctcg tagagcagac tttgagcgcg gccgtagagc
     9301 gcgctcgcgc gaagtccggc gcggcgatag tgctcgaccc gcgcacggga gagatactgg
     9361 cgctcgcgaa cgcgccggcc ttcgacccga acgacgcctc gtcggccacg cccgagtcgc
     9421 gccgcaacga cgcgctgcaa aacatctacg agcccggctc gaccttcaag gtcgtcgcct
     9481 acgcaggggc gctcgaagac aaaaggacgc ggcccgacga gcccattgac tgcctcggcg
     9541 gcggtatcac ggtcgccggc cggttcatac gcgaccacac gccctacggc acgctcacga
     9601 ccaccgaggc tctggcgaag tcgtcgaacg tcgccgccat caagctcggc attaggctcg
     9661 gcaacgagcg catgtacgag tacatgcgcc gcttcggctt cggcgcgaag acgggcgtgg
     9721 agctgccggg cgagacgcag ggcctgttaa ggcaggtgaa gaactggcac ggaagctcca
     9781 taggctcgct cgccatcggg caggagattg gcgtcacccc cgtgcagatg gccgcggcct
     9841 acgccgcgat tgcgaacgac ggcgtgcgag tagcgccaca catcgtaaag gagattcgcg
     9901 accacgaggg caacgtcgtg gagctggccc ggccggcgag cgaaagggtc gtgagcgcgg
     9961 agacggcgca gacgctccgc cgcatgctag agatggtgac gctgaagggg acggcgaagc
    10021 gcgcgcagct cgaaggctac acggcagccg ggaagacagg cacggcgcag aagattgacc
    10081 caaagacgcg cggctattcg aagacgaagc acgtcgcctc gttcgtcggc ttcgcgcccg
    10141 tagagaggcc ggccgccgtc atcatcgtcg tcgtggacga gccggtcggc gcctaccacg
    10201 gcggcgacgt ggccgcgccc gtcttcaggg agattgccga ccagatactt ccttacctcg
    10261 aagtcgggcc ggaccagtcg ccgtcggaag aggctgcgcc cgcgggccaa ctcgctgcgt
    10321 cgccgcagcc gcgcgcgacc gccccggccg ttgaagaggg cgccgccgtc gtcgcggtca
    10381 gcctgcccga ggtcgttctg cgcggcggcg acggcgaggt ggtctatgcg gcggcgggcg
    10441 agagcgcgct gctcatgccc gacttgcgcg gccgcagcgt ccgcgacgcg gcgctcgtct
    10501 gcgagcggct cgggctcgat ctcgaagcag tcggcgaggg gcgcgccgtc cggcagagcc
    10561 cctcggccgg cgagacggtc gaagcgggac agaccgtgcg gatagagttc ggcaggagcg
    10621 actgagagga aggagtcagc agccagcttt gaaaacccct ctggaaggct gactgtttga
    10681 ataagcgttt taatgcccca gacgaaaaag ctgagagctg atagctgacg gctgacggct
    10741 ttttcccccg gaaggtgaga tggcaaatca gagggctctg gtcaatttct cgcgggcggg
    10801 cgcgggcgaa acgggtgaga tgaggcggag aatttcggag tgccgggagc gtttgcgccg
    10861 caatcgggcg gcgcgcagaa taccggcacg cgctaaccca accggagaga gctcggcggc
    10921 gggagagacc gaactagcct ccctgtcgcg ggggctcggc gggcgggagg agaagattta
    10981 agtggcggcg gctctctctg aatcatgcgc gccgggccgg ccccgttaca tcccgaagcg
    11041 caggagagag ccggcgtgag agtcagacag gccgcggagt tcatgcgcgc gcccggaggg
    11101 gcgcgcggga aggtctttga caaagaaata aaaggtttct cgattgactc gcgcgcgacg
    11161 cgcgagggcg agctcttctt cgcgctctcg ccggaggact accgccgtca ctgcttcacg
    11221 gccacgtcct tcgccgacgc gcaccgcttc gtccccgagg ccctggcgca aggcgcggtg
    11281 gccgcggtcg tgcgcgcgga gcgcgccggc gccgacgaag agcttcgccc cttgcgcgac
    11341 aggctgctgc ctgtggacga cgtgatagag gctttgcagc tcgtcgcgcg cggggtgatt
    11401 gacgggtggg gcggcccggt cgtcggcatt acgggcagcg ccggcaagac tacgacgaag
    11461 gacttaacgg cgcacgtgct cggctcgacg ggccgaaggg ccctgcgcag ccgcaagaac
    11521 ttcaacaacg agcttggcgt cgccctctcc gtcttgcaga tggagtcggg cggcgcccgt
    11581 cccgaagagt tcgacgttgc cgtgctggag atggggatgt cggtgccggg cgagatcgcg
    11641 cgccactgcc gggtcgcccc gcccgacgtt gcggtgctga ctttggtggc gcccgtgcat
    11701 cttgagttca tgggctcggt cgaggcgatt gccgagggca aggcgcagct tgtcgagggg
    11761 atgaagccgg gcggcactgc cgtcttgaac gccgacgacg agcgcgtgct cgcgatgcgc
    11821 gcgaaggccg cgcacgccgg ccgcgtaatc acctacggcc tggccgaggc ggccgacgtt
    11881 cgggcggtcg gggtcgagac ggccggcgtc ggcgcgagca ggttcgtctt gaaaacgccg
    11941 gacggcgagg cggaggtcct gctcccgatg cacggccgcc acaacgtctc gaacgcactg
    12001 gcggcggcgg ctgcggccgt cagcttcggt gtcagtgtag ggcagatagc cgaggcgctc
    12061 gcgaccgcgg cgccttccga gatgcgcgga gaggttctgc gcttcagcga gggcttcacg
    12121 gtcgtggacg attcgtacaa ctcgaacccg cgctcgctgc tctcgatggc cgaggcggtt
    12181 gcgcaggggg gcgagggcgt caagcggcgc gtggtcgtcg cgggcgagat gctggagctg
    12241 ggcgaagagg gggcggcgct ccaccgcgcg gcggggcgcg agatagccgg cttcggcgtt
    12301 gacgtgctct ggggggtgcg cgggctcgcg cgcgagttgg tcgagggcgc gcgctcggcc
    12361 ggcatgagct actcggcgac gcagtttttc gactcctccg aggctgcggc cgaggcgctc
    12421 gccgagttcg tccgagccgg cgacctcgtc ctcgtcaagg gctcgcgcgg cgtccacacg
    12481 gaaagggtcg tggaggtttt gagggaacgg tacggactta agaagggatg atctaccaca
    12541 tcttctacga atggctcttc aaggccctct cggcgacgag cgggggcgag agctatttcg
    12601 tgaaggcgct gaacgtcttc cagtacgtga cgttccgcac ggcctacgcg gcgataacgg
    12661 cgctgctcat ctcgctcgtc ttcggcgggc gcgtcatcga ggcgctcagg cgcctcaagg
    12721 tcgggcagga gattcgcgag gaggggccgc aggcgcacca ggccaagcgc ggcaccccga
    12781 ccatgggcgg cgtgctcatc ataggctccg tgctcatctc gacgcttctg tgggcgcgcc
    12841 tcaacagcct ctacgtctgg ataatccttc tggcgacgac ggcgttcgcc gtcatcggct
    12901 tcatagacga ctaccagaag gtagcgaaga agcagagcct ggggctgacg ggcaggaaga
    12961 agctcgcggg gcagctcgcg atcgcactgg gcgtgtgggg cgcgctcttc ttcttcacgt
    13021 acatcggctg ggccgactac tcgtggaagc tggggctgcc gttcttcaag cgcacggcgc
    13081 tcgagaacat cacgaacatc ggccccgtcg tctatctcct cttcatcgcg gtcgtgctgc
    13141 tcggcttctc gaacgcggtg aatttgacgg acgggctcga cgggctggcg ataagcgtga
    13201 ccgtcatcgc aatggcgacc ctgaccgcct tcacatacgt gagcggcgac gcgcggtggg
    13261 ccgactatct cggcctcgag caccagaagg acatagggga gcttacggtc ttctgcggcg
    13321 cgatggtcgg ggcgagcctc gggttccttt ggttcaacgc gccgccggcc gaggtcttca
    13381 tgggcgacgt gggcagcctc gccatcggcg gggccgtcgg caccatcggc gtactgacga
    13441 agcaggagct gatactcgtg ctcatcggcg gcgtctatgt ggtggaggcg ctctcggtga
    13501 cgctccaggt ctctttcttc aagatgacga agcggagcac ggggacgggg cgccggcttt
    13561 tcaagatgac gccgctgcac caccacttcg agatgtcggg ctggaaggag ccgaagatag
    13621 tcttccggtt tctgataata gcgatactgt tcgcgctcct gagcctctcg acgttgaagc
    13681 tgcgctgagc gattgtcgtg gaactcgacg gcaaaaaagt cctggtcata ggagccgccc
    13741 gcagcggcgt ggcggcggcg cgcttcctcg ccgcccgcgg cgcgctcgtc gtcctgaacg
    13801 accggaagga gttcatagac tggccgaacg aggcgctggc tttgaagtcc gaaggcgtcg
    13861 ttaagctgct cgcgggcgag atgccttcgt ggctgttgga tcaggtcgag ctggtcgtcc
    13921 tgagccccgg cgtccccttg aagagcatac ccgtccgcta cgcagaccgc gcgggcgccg
    13981 aagtcatcgg cgaggtcgag ctggcgtggc gcttcctgcg cggccgcgtc gtaggcatca
    14041 cggggacgaa cgggaagacg acgacgacga cgctcgtcgg cgagctactc aaggacgcgg
    14101 gtgtcccggc gcaggtcggc ggcaacatcg gcacgccgct cgtctctctg gtcgaggcgt
    14161 cgcgcgagga cggctggacg gtcgcggagc tttccagcta ccagctcgag accatcagcg
    14221 agttccgccc gacggtcgcc gtcgtcctga acctgatgcc cgaccacatg gacaggtacg
    14281 agaccttcgc ggactacggc gcggccaagc accgcatatt ccgcaaccag accgagtcgg
    14341 acgtggcgat acttaacgcc gacgacgcgg tcgtctcttc atgggcgcgg gggctgcggg
    14401 cgcacgtcgt gctcttcagc acggagcgcg agctggaaga ggggttgttc ctgcgggggc
    14461 gcgagctggt ctcgcgcacg cgcgacggcg agcgcgtgat tttgacgcgc gacgacatgc
    14521 agctaaaggg cctgcacaac gtgcagaacg ttctggccgc gctcgcggcg ggcctcgcgt
    14581 gtggcgcctc gcccgaatcc atgcgggaga cggtgcggcg cttcgcgccc gtcgagcaca
    14641 ggctggagcg cgtggccgag gtcggcggcg taacgttcta caacgactcg aaggcgacga
    14701 acgtggacgc ggccgtcaag gcggtcgagg cgctcgcaga ggagccgggc cggatagttt
    14761 tgattctcgg cggccgcggc aagaacgcgc catacgcccc gctcgcgccg ttagtcgagc
    14821 ggaaggggcg cgcgctcgtc ctcataggcg aggacgcaga ccggatcgag agcgagctta
    14881 aaagcttcgc gcccgtcgag cgcgccgcgg acatggccga cgccgtgcgc cgcgccttcg
    14941 ccgcggccga gcccggcgac acggttctgc tcgccccggc gtgcgcgagc ttcgacatgt
    15001 tcacgagcta cgagcaccgc gggcgtgtgt tcaaggagga ggtcagaagc attcaacaat
    15061 cagcgcccgg cggccggcag gagtcggccg cgctgaacgc gaagggctga aagctgactg
    15121 ccgattgccg gaaagctttt tatggctcgg aagctacagg cggatgagtg gttgttcgcg
    15181 ggcgtgctgg cgctggcgat gttcggcgtc gtgatggtct atagcgcgtc ggcggtcgtc
    15241 gccctgagcg agaaccagag ccagtactac tacgtcaagc ggcaggccat ctggacgctc
    15301 atcgggctcg gcgcgatgtg gctggggatg cggctcgact acaggaagct caagggcggg
    15361 ggagtcgcct acgggttgct gctggtgacg gcggtgctgc tgctggccgt cttcgcgttc
    15421 ccgccgataa acggcgcgcg gcgctggata cgcttcgcgg gcttctcgat gcagccgtcg
    15481 gagatggcga agctcgcgct cgccgtcttc ctcgcgcgct tcctcgagag gcgcgcgggc
    15541 gaggaggggt cgttctttaa gacgttcctg ccgtgctccg ccgtgacggg cgcgctcgcg
    15601 ctgctcgtcg tggccgagcc ggatctgggg acggcgatga tgctcgtcgt catctgtttc
    15661 gtcatcctct tcacggcggg ggcgaggctc cggcaccttg cgctcgcggc cgcaccggct
    15721 ctcgtcgcgc tggcgggact gctgctgttc gtgccgtggc ggctaaagag gatggtcacg
    15781 tttttgaacc cgtgggccga cccgcagggc gcgggctacc aggtcgtgca gtcgctcctt
    15841 gccgtcggct cgggcggggt gcacgggctt ggcttcaccg aagggcggca gaagatgttc
    15901 ttcctgccgt tcgcccactc ggacttcatc ttcgccgtgg tgggcgagga gttggggctc
    15961 ttcggcgcgc tcggcgtggt cgcgctcttc gcgctattcc tgtggcgggg attgcgcgct
    16021 gcggtgcgcg cgccggacag gttcgggatg ctgctgggcg tgggggtcgt gaccgggata
    16081 gtcgcgcagg ctcttttcaa catgagcgtc gtgctgtcgc tcgtgccgac gaagggcata
    16141 ccgctgccct tcgtctccta cggcgggtcg tcgctggtgc cgacgctttt cgcggccggc
    16201 gtcctgctca acatctcgca gcacgcgcgc ttcgagctga ggtgacgggg gtgcgcgtgc
    16261 tgatagccgc gggtgggacg ggcggccaca tctaccccgg catcgccgtc gcgaaggaag
    16321 tgatgcggcg cgacccgcag tcggccgtgc ggttcgtagg caccgcacgc ggtttagaga
    16381 cgcggctcgt gccgcaggcg ggcttcgaat tgtcgctcat tgaatcggcg gggctcgtta
    16441 acatggggct ggcggcgcgc ctgcgcgggc tgatgatact gccgaagagt ttcgtcggcg
    16501 cgcggaggct cgtaaaagag ttccgccctg acgtggtggc gggcgcgggc ggctacgtct
    16561 cggggcctgt gctgctgacg gcggcgctga tgaaagtgcc gacgctcgtg atggagtcga
    16621 acgcggtgcc ggggttcacg aaccgcaggc tcgcgcgctt cgttgacgcg gcggccgtct
    16681 cgttcgaggc ggcgctccct tacttcggcg gcaagggcgt cgtgaccggc aaccccgtcc
    16741 gccgggagtt ctttgaggca ccgccgaaga agcgcgaccc cacgcgcttc tcgctcttgg
    16801 tcttcggcgg ctcgcagggc gcgcgcgcgg tcaacgaggc ggtcgtgtcg gcgctgccgc
    16861 atctcgcggc ctacgccgac gtgctgcgtg tgacacacca gacgggcaag ctcgacttcg
    16921 agcgcgtgcg cggcgcttac gaggcggccg gctgggccga gcgcgcggac gtgcgcgagt
    16981 acatagacga catggtcgcg gccttctcgt cggcagactt gatcgtctcg cgcgccggag
    17041 cgaccacgag cttcgagttg atggcggcgg gcaaggccgc gctgatggtg ccgctgcccg
    17101 gccagctcga acagcggcgc aacgccgagg tgatgcagga ggccggggcg gcgcggatga
    17161 tcttgcagga ggagctttcg ggcgagcgcc tcgcgcgcga gataggcgca ctcgtggcag
    17221 accccgacag cgtgacgagg atggaagagg cggcgcgacg cctcgcgcgc ggcgacgccg
    17281 cgaaggcgac ggttgatttg attgaaaagc tggtaagcaa tcagcggtct gcggtcggct
    17341 aaagacgaaa ggctgatagc tgaaaagctg actgcttcaa atttatgttc cggcgcatcc
    17401 agcacgtcca tttcgtaggc atcggcggca tcggcatgtc cggcatcgcc gaggttctgt
    17461 cgaacatggg cttccgcgtg tcgggctccg atttgcggcg gtcggacgtg acggcgcgtt
    17521 tggaggagag gggcgtacag atcttcgagg ggcacgcggc ggagaacgtg ggcgacgcgc
    17581 acgtggtcgt gcgctcgacg gccgtgcgcg acgacaaccc ggaagtggtc gaggcccgcc
    17641 ggcgctccgt ccccgtcatc ccgcgcgccg aaatgctggg cgagctgatg cggctcaaac
    17701 cccacaccgt cgccgtcgcc ggctcgcacg gcaagacaac gacgacctcg atgatagcca
    17761 cggtgctcgc gcacgcgaat ttagacccga cggtcgtagt cggcggcgtc gtcggcgcga
    17821 tgggctcgaa cgcgcgcctg gggaagagcg acctgatggt cgtcgaggcg gatgagagcg
    17881 accgctcgtt cctgatgctg acgccgacgt tcgcagtcgt cacgaacatt gaccgcgagc
    17941 acatggatca ctacgccgac atgacggacg tgcggaagtg cttcgccgac ttcgtcaaca
    18001 aggtgccgtt ctacggcgcg tccgtgctct gcctcgacga cccgcacgtg caggccgtca
    18061 tccccgaggt cgtccgccgc cgcgttactt acggattgag cgcgcaggcc gacatcgccg
    18121 cgcgcgaggt gcgctacgac aggcagttcg gctcggtcta ccaggcgcgc ctgatgggcg
    18181 agcccgtcgg cgaagtctcc ctgcgcgtgc cggggctgca caacatctac aactcgctgg
    18241 cggccatcgc catcgggctg gaactcgaag tgccgttcgc gaccatcgcg aaggcgctcg
    18301 gcgagttcac gggcgtcaac cggcgcttcc agttcaaggg cgaggccgcg ggcgtcatcg
    18361 tcgtggacga ctacggccac cacccgacgg agatacgcgc gacgctcgtc gcggcgaagc
    18421 tcggctcggc cggacgccgg atggtcgtgc tcttccagcc gcaccgctac acgcggacgc
    18481 aggacttgat ggacgagttc gcgcgctcct tcaacaacgc cgacgtgctg atggtgaccg
    18541 acatctacgc cgcgagcgag cggcccatcg agggcgtg
//
LOCUS       DASPKR010000055         6464 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1430886, whole genome shotgun sequence.
ACCESSION   DASPKR010000055 DASPKR010000000
VERSION     DASPKR010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6464)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6464
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1430886"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..641)
                     /locus_tag="VD968_01700"
     CDS             complement(<1..641)
                     /locus_tag="VD968_01700"
                     /inference="COORDINATES: protein motif:HMM:NF013568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13136.1"
                     /translation="MGSEVAEYRGQVEAVREAFEREFGRFARFGEGAGGSPPLAEAES
                     LLRELSDLRTRHTGKKSALAGLKKLIGRVPADERAAFGQVVQQLESEVAESLAAAESA
                     LRAQIAAARVERERVDVTLPGRRPRRGHVHPINIVRQRLEDIFVSMGYAVEDGPEVET
                     DFYNFTALNIPELHPARSPQDTFYTTDGLSLRSQTSTVQIRAMQRRRPPLRIVA"
     gene            complement(676..1053)
                     /gene="rplT"
                     /locus_tag="VD968_01705"
     CDS             complement(676..1053)
                     /gene="rplT"
                     /locus_tag="VD968_01705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HYE13137.1"
                     /translation="MPRAKRGNKRTERRKKILDLAKGYRGTKSKLYRSAKESVERGLK
                     FAYTGRKLKKRDFRSLWIVRIGAAARVNGLNYSQFMHGLSLAGIELDRKVLADLAANS
                     PDAFAELAGQARTAIANKPQPTA"
     gene            complement(1089..1292)
                     /gene="rpmI"
                     /locus_tag="VD968_01710"
     CDS             complement(1089..1292)
                     /gene="rpmI"
                     /locus_tag="VD968_01710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016998296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HYE13138.1"
                     /translation="MPKLKTHKGAAKRFRTTASGKVKRGHSHARHILTKKTAKRKRAL
                     DIDVLVSEADEVRIQRMLPYGRS"
     gene            complement(1344..2012)
                     /gene="infC"
                     /locus_tag="VD968_01715"
     CDS             complement(1344..2012)
                     /gene="infC"
                     /locus_tag="VD968_01715"
                     /inference="COORDINATES: protein motif:HMM:TIGR00168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HYE13139.1"
                     /translation="MSIPSFRGRGQRPDNRRAPATRINERIRVPEVRVIGEEGEQLGI
                     LNTRDAVRMAREKGMDLVEVAPNAEPPVCRIIDYGKFTYENKKKANEAKKKQVIIVVK
                     EVKFRPGTDDHDYNFKMKHARDWLQEGDKVKATIFFRGREITHRELGQQLLERLEKDL
                     AEFGEVEARPRMEGNQMFLIFAPKRHKGARHDGQKHEAPKTEGGVTQGPPVSSPDKGG
                     MVEG"
     gene            complement(2100..4082)
                     /gene="thrS"
                     /locus_tag="VD968_01720"
     CDS             complement(2100..4082)
                     /gene="thrS"
                     /locus_tag="VD968_01720"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HYE13140.1"
                     /translation="MSEINVQIGGGEPRALPSGVTVAEALKQADRDAARQALAAKVNG
                     REVDLSHRLDAAASNGEPVRVEAVLPGTLEGLDVIRHSTAHLLAAAVLDLFPGTQLGI
                     GPALLDDPRYGFFYDVIAPRMLTEEDLPAIEKRMRDFAKRNLAYRREDIPKAEALRVF
                     EERKEPLKCELISEKGGDHVSVYYIDGSPFIDFCLGPHVPNTNRLKAFKLLSLSGAYW
                     MGDAERPQMQRIYGTAFATQEELDAWLKQREEAERRDHRRLGRELDLFSIQDAYGAGL
                     VFWHPKGAVVRKAMEDYLYEELNRRGYTFVYTPHIAKRDLWVTSGHDQSYGDSMFSPV
                     KLEETEFRLKPMNCPFHIGIYRSQQRSYRDLPQRYAEMGTVYRAELSGTLHGLMRVRG
                     FTVDDAHLFCTPEQVRKEIDDCLDFVVDVFRTFGFEKVKFELSVKGSDASKQWLGSDD
                     DWAKAESALAEALDARGISYERMEGEAAFYGPKIDLKIEDAIGRLWQLGTVQWDFNLP
                     ERFELEYIGEDNKPHRPVMVHRALFGSIERFFGILIEQYTGAFPMWLAPVQVTVLPIT
                     DRVNEYAERVARELRGAGLRVETNLRGDKIGAKIRSAQLQKIPFMLVVGDREMEEGKV
                     AVRERSRGDVGVMSLEEFRQAAVRLARTRALTNDVT"
     gene            complement(4355..4431)
                     /locus_tag="VD968_01725"
     tRNA            complement(4355..4431)
                     /locus_tag="VD968_01725"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4395..4397),aa:Val,seq:gac)
     gene            4733..>6464
                     /locus_tag="VD968_01730"
     CDS             4733..>6464
                     /locus_tag="VD968_01730"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE13141.1"
                     /translation="MSPTLSLANNKDATAPRPRKGRPKRPSSLCLLLCIALASALTAS
                     AQSPGPQPAAQPSPTPTPYVRPRVVSPKPEPSPAASPAQTESPGQAQQPPQHQPQSEP
                     EEVDEGEVVRVDSNLVLIPASVVDARGRAMTDLKLEDFELRVDGEVKPIGDLSRAETP
                     VHIALLFDNSASLSAAREFEKQAAVRFFQSLVRPIDRAAVYSISTSPTLALPLTNDVR
                     RLVQTIEQFPKPDGATALFDTLSHAADYMYGVAGRKVIVLVSDGTDTVSDTTFDEALA
                     RALRADCQVYVVQTRQIEDPNLHDPFSEGLLAKLTEQTGGAVFAPRSIDELDTAFTQI
                     SLDLSQQYLLSYYPAEERKDKYFRFINLRVKNRPQARVRARKGFYPLAPGDHSAPAEL
                     AKAHGKFSATSRPDATAAAPTTPAADARRKPVAGTSTKAQAARDAVATTNRRIGPAGP
                     DDEERPRAAAAAPAPEPTATFTLTPVVSETQRRPAPTPSPSPAPPAPSQSLFSGGVAS
                     VAQPAPAPTATPTPTPTPAPAPTPAPKAEQTAAPKTPVSGGVLNSKAVALPRPVYPPA
                     AKSVGVYGKVV"
BASE COUNT         1025 a         2259 c         2036 g         1144 t
ORIGIN      
        1 gcgacgatgc ggagcggcgg gcgccggcgc tgcatcgcgc gaatctgcac ggtcgaagtc
       61 tgcgagcgaa ggctcaggcc gtcggtcgtg tagaaggtgt cctgcgggct gcgcgcgggg
      121 tgcagctctg ggatgttgag cgcggtgaag ttgtagaagt cggtctcgac ctcggggccg
      181 tcctctacgg cgtagcccat cgagacgaag atgtcttcga gccgctggcg cacgatattg
      241 atcgggtgga cgtggccgcg ccgcggccga cggccgggca gcgttacgtc cacgcgctcg
      301 cgctcgacgc gcgcggccgc tatctgtgcg cgcagcgccg actcggccgc ggcgagcgac
      361 tccgcgactt cggattcgag ctgctgcacg acctgcccga acgccgcgcg ctcatcggcc
      421 ggcacgcgcc cgatgagctt cttcaggccc gcgagcgcgc tcttcttccc cgtgtggcgc
      481 gtccgaaggt ctgaaagctc gcgcaagagc gactccgcct ctgccagagg cggcgagccg
      541 cccgcgccct ccccgaagcg agcgaagcgc ccgaactctc gctcgaacgc ttcgcgaacc
      601 gcttcgacct gcccgcggta ttccgctact tcggaaccca tctgatcccc cgtcctgaaa
      661 ggccggcgcg ccctgtcagg cggtcggctg cggcttgttc gctatggccg tgcgcgcctg
      721 gcccgcaagc tccgcgaagg cgtcgggcga gttggcggcg aggtcggcga gcaccttgcg
      781 gtcgagctcg atgccggcga ggctcaggcc gtgcatgaac tgcgagtagt tcaggccgtt
      841 gacgcgcgcg gccgcgccga tgcggactat ccagaggctg cggaagtcgc gcttcttcag
      901 cttgcggccc gtgtaggcga acttcaggcc gcgctcgacc gactccttag ccgagcggta
      961 cagcttcgac ttggtgccac ggtagccctt cgccaggtcg agaatcttct tgcgcctctc
     1021 cgtgcgcttg ttaccacgtt ttgcccttgg catgactaaa acctccttaa aaatgcagaa
     1081 gtcagagctc agctacgccc gtagggcagc atgcgctgta tgcgcacctc gtcggcctcg
     1141 gaaacgagca cgtctatgtc gagggcgcgc ttgcgcttgg ccgtcttctt cgtgagtatg
     1201 tggcgcgcgt gcgagtgccc gcgcttgacc ttgccggagg cggtcgtgcg gaagcgcttc
     1261 gccgcgccct tgtgcgtctt cagtttaggc ataattaaaa cctcccggaa aaatgaagtc
     1321 gtccttatcg cgacttctgt ccattaaccc tctaccatcc cacccttgtc gggcgacgag
     1381 acgggcggcc cctgcgtcac gccgccttcg gtcttcggcg cctcgtgctt ctgcccgtcg
     1441 tggcgcgcgc ccttgtggcg cttcggggcg aagatgagga acatctggtt gccctccatg
     1501 cgggggcgcg cctcgacctc gccgaactcc gcgaggtctt tctccaagcg ttcgaggagc
     1561 tgttgcccca gctcgcggtg cgttatctcg cggccgcgga agaagatggt ggccttgacc
     1621 ttgtcgccct cctgcagcca gtcgcgcgcg tgcttcattt tgaagttgta gtcgtggtcg
     1681 tcggtgccag ggcggaactt cacctccttg acgacgatga tgacctgctt cttcttagcc
     1741 tcgttcgcct tcttcttgtt ctcgtaggtg aacttgccgt agtcaatgat gcggcacacg
     1801 ggcggctccg cgttcggcgc gacctcgacc aagtccatcc ccttctcgcg ggccatcctc
     1861 acggcgtcgc gcgtgttgag gatgccgagc tgctcgccct cctcgcctat cacgcggact
     1921 tcgggcacgc ggattctctc gttgattcgc gtggcaggag cgcggcggtt gtccgggcgc
     1981 tgcccacggc ctcgaaatga cggaatactc acacctcctg agttagaggc tggggggtag
     2041 aggctagagg ctagttgata accaatcttc tgttaccagc ctctggcctc cccccagcct
     2101 catgttacgt cgttcgtcag agcgcgcgtg cgcgctaggc gcacggccgc ctgcctgaac
     2161 tcttcgagcg acatgacgcc cacgtcgccg cgcgagcgct cgcgcacggc caccttgccc
     2221 tcctccatct ctcggtctcc gacgacgagc atgaagggaa tcttctgcaa ctgcgcggag
     2281 cgtatcttcg cgcctatctt gtcgccgcgc aggttcgtct cgacgcgcag gcccgccccg
     2341 cgcagctcgc gcgcaacccg ctcggcgtac tcgttcacgc ggtctgttat cggcagcacc
     2401 gtcacctgca cgggcgcgag ccacatgggg aacgcccccg tgtactgctc gatgaggatg
     2461 ccaaagaatc gctcaataga gccgaacagc gcgcggtgaa ccatcacggg gcggtgcggc
     2521 ttgttgtcct cgccgatgta ctcaagctcg aagcgctccg gcaggttgaa gtcccactgc
     2581 acggtgccga gctgccagag gcggccgatt gcgtcttcaa tcttcaggtc tatcttcggc
     2641 ccgtagaagg cggcctcgcc ctccattcgc tcgtaagaga tgccgcgcgc gtcgagcgcc
     2701 tcggcgagtg cgctttcggc cttcgcccag tcgtcgtccg agccgagcca ctgcttcgag
     2761 gcgtcgctcc ccttcaccga tagctcgaac ttcaccttct cgaagccgaa ggtgcggaac
     2821 acgtcaacga cgaagtcgag gcagtcgtct atctcttttc gcacctgctc gggggtgcag
     2881 aacaggtgcg cgtcgtcaac ggtgaagccc cgcacgcgca tcaacccgtg cagagtgccc
     2941 gaaagctccg cgcgatagac cgtgcccatc tcggcatagc gctgcggcaa atcccggtaa
     3001 gagcgctgct gcgagcggta tatgcctatg tggaacgggc agttcatcgg cttcaggcgg
     3061 aactccgtct cttcgagctt caccggcgag aacatcgagt cgccgtagct ctggtcgtgc
     3121 ccgctggtga cccagaggtc gcgcttggcg atgtgcggcg tatagacgaa ggtgtagccg
     3181 cggcggttca gctcctcgta gaggtagtcc tccatcgcct tgcgcacgac ggcgcccttc
     3241 gggtgccaga agacgagccc cgcgccgtag gcgtcctgta ttgagaagag gtccagctcg
     3301 cggcccaagc ggcggtggtc gcgccgctcg gcctcctcgc gctgcttgag ccaagcgtca
     3361 agctcttcct gggtggcgaa ggccgtgccg tagatgcgct gcatctgcgg gcgctcggcg
     3421 tcgcccatcc agtatgcgcc cgagagcgag aggagcttga acgccttcag gcggttggtg
     3481 ttcggcacgt gcgggccgag gcagaagtct atgaacggcg agccgtctat gtaatagacg
     3541 ctgacatggt cgccgccctt ctcgcttatc agctcgcact tcagcggctc tttgcgctcc
     3601 tcgaatacgc gcagcgcctc cgccttcggt atgtcctcgc ggcggtatgc gaggttgcgc
     3661 ttggcgaagt cgcgcatgcg cttctcgatg gccggcaggt cttcctcagt cagcatgcgc
     3721 ggcgcgataa cgtcgtagaa gaagccgtag cgcgggtcgt ccaaaagcgc aggccctatg
     3781 cctagctgcg tccccggaaa gaggtcgagc acggccgcgg ccagcaggtg cgccgtcgag
     3841 tggcgtatca cgtctaagcc ttcgagcgtg ccgggaagca ccgcctcgac gcgcacgggc
     3901 tcgccgttcg acgcggcggc gtcgagcctg tgcgagaggt caacctctcg gccgttgacc
     3961 ttggcggcga gcgcctgcct tgcggcgtcg cggtcggcct gcttgagcgc ctccgcgacg
     4021 gtcacgcccg agggcagtgc gcgcggctcg ccgcctccga tttggacgtt tatctcactc
     4081 atggtcttct ctccccgcgc cgggccgcgc gccgcacggc ccgacaggcc ccgcaaactg
     4141 tgcggaggcc ccgcggaaag aaagcttcta actgacggcc gtcccgtggt cgggatttaa
     4201 actgacctta gatcggattc gacagaagcg ccctcgccgc gcggcctcgc ccgtttggcg
     4261 ggcggccagc gtcaactaaa atcgaaacgt agttcgcgtt cgcgtcaaca tttcgggctc
     4321 gggtcttccg gagcttcctg tcgaaaaaag aaagtggtag gcacgtgcgg atttgaaccg
     4381 cagaccccta ccgtgtcaag gtagtgctct accgggctga gctacgtgcc tgcacgaaac
     4441 cgagttacca aacaaacgct cccgaaaaag cggaaggcta agttaacaaa cggcttacgc
     4501 actgtcaagc ggccgccgcg ggcgggcgcc gcaaaaggct accgggaagc gccgcggaag
     4561 tgttagcata ggcgccgcct cggggccggc gcagcccctg cggcttcgga aaactacccg
     4621 gattggcctt ttccgtcctt catgcggccg cagcacttaa caaaaacttg gcttcacttc
     4681 cgcccggctc gccgcacgcc cgtcgcgcag atgagaacgg agatttaaaa ctttgtcccc
     4741 caccttgtcc cttgcgaata ataaagatgc gacggcgccg cgcccccgca agggccggcc
     4801 gaagcggccc tcaagccttt gccttctgct ctgcatcgcc ctcgcctccg ccctgacagc
     4861 ctcggcgcag tcgccggggc cgcagcccgc cgcgcagccc tcgcccacgc ccacgcccta
     4921 cgtccgcccg cgcgtagtct cgccgaagcc ggagccttcg cccgccgcgt cgcccgcgca
     4981 gacggaatcg cctggacagg cgcagcagcc gccgcaacac cagccgcagt ccgagcccga
     5041 ggaggttgac gagggcgagg tcgtgcgggt tgactcgaat ctcgtgctga tccccgcgtc
     5101 ggtcgtggac gcgcgcgggc gcgcgatgac cgacttgaag ctcgaagact tcgagctccg
     5161 cgttgacggc gaggtgaagc cgataggcga cctgagccgc gccgaaacgc ccgtccacat
     5221 cgcgctcctg ttcgacaaca gcgcaagcct ctcggccgcg cgcgagttcg agaagcaggc
     5281 ggccgtgcgc ttcttccagt cgctcgtgcg ccccattgac cgcgccgcag tctattccat
     5341 ctccacctcg cccacgctcg cgctgccgct cacgaacgac gtgcgccgcc tcgttcagac
     5401 catcgagcaa ttccccaagc ccgacggcgc caccgcactc ttcgacacgc tctcgcacgc
     5461 ggccgactac atgtacggcg tcgcgggccg aaaggtcatc gtcctcgttt cggatggcac
     5521 cgacaccgtc agcgacacga cattcgacga ggcgctcgcg cgggcgctgc gagccgactg
     5581 ccaggtttac gtcgtgcaga cgcgccagat cgaagacccg aacctgcacg acccgttctc
     5641 ggaagggctg ctcgcgaagc tcacggagca gaccggcggc gccgttttcg cgccgcgctc
     5701 tatagacgag ctcgacacgg ccttcacgca aatctctctc gacctctcgc agcagtacct
     5761 gctcagctac tacccggccg aggagcgtaa ggacaagtac ttccgcttca tcaacctgcg
     5821 cgtcaagaac cgcccgcagg cccgcgtgcg cgcgcggaag ggcttctacc cgctcgcgcc
     5881 gggcgaccac tcggcgccgg ccgagcttgc gaaggcgcac ggcaagttct ccgccacgtc
     5941 tcggccggac gcgacggctg cggcgccgac aactcctgcg gccgacgcgc gccgcaagcc
     6001 cgtcgcaggc acgagcacga aggctcaagc ggcgcgcgac gctgtcgcga ctacgaaccg
     6061 aagaatcggc ccggccgggc ctgatgacga ggagcgaccg agggctgccg ccgccgcgcc
     6121 tgcgcccgag ccgacggcca ccttcacact gacgcccgtc gtgtccgaga ctcagcgccg
     6181 gcccgctccg actccgtcgc cttcgcctgc gccgccagcg ccgagtcagt ctctcttttc
     6241 cggcggcgtc gcttcggtcg cgcagcccgc cccggcgccg accgcaacgc caacgccgac
     6301 cccaacgccg gctcccgccc cgacgccggc gccgaaggcc gagcagactg ccgcgccgaa
     6361 gacgccggtc tcgggcggcg tgctcaacag caaggccgtc gcgctgcccc ggcccgtcta
     6421 tcctccggcc gcgaagagcg tcggtgttta cggcaaggtc gtag
//
LOCUS       DASPKR010000056         2505 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1041938, whole genome shotgun sequence.
ACCESSION   DASPKR010000056 DASPKR010000000
VERSION     DASPKR010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2505)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2505
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1041938"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..625
                     /locus_tag="VD968_01735"
     CDS             <1..625
                     /locus_tag="VD968_01735"
                     /inference="COORDINATES: protein motif:HMM:NF012497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13142.1"
                     /translation="GTFLVAACITNGELEIKDCRPEHSAIVIAKLREAGVEIEEINQN
                     TLHVRCGSSGLRGRDVTTEPHPRFPTDMQAQYMALMTQAAGTSHITETIFENRFMHAS
                     EMQRMGARIHISGRTAVVEGPSRLAGARVQASDLRASACLVLAGLAAGGETTIDRVYH
                     IDRGYEKIESKLRSVGADIERVRESVTAQLPPVETVAAQREAEAGAV"
     gene            622..855
                     /locus_tag="VD968_01740"
     CDS             622..855
                     /locus_tag="VD968_01740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13143.1"
                     /translation="MTKVTVKEELRARVLAMVLAAVLVWYTSLVPAGAPARVIRPRSP
                     EDDEGRGGESRPRRAPQGEAIEELDWPEYIGLD"
     gene            866..1219
                     /locus_tag="VD968_01745"
     CDS             866..1219
                     /locus_tag="VD968_01745"
                     /inference="COORDINATES: protein motif:HMM:NF023395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HYE13144.1"
                     /translation="MAESQDCIFCKIAAGEIPSGKVFEDERAVAFRDINAQAPTHVLV
                     IPREHVASLEEAGDAQESMLGHLLLVAARVAREQGLKDSGYRTVINTGAGAGQSVFHL
                     HLHVLGGRPLSWPPG"
     gene            complement(1216..2358)
                     /locus_tag="VD968_01750"
     CDS             complement(1216..2358)
                     /locus_tag="VD968_01750"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HYE13145.1"
                     /translation="MADGDDSRRLSELTVGEARRALVYAAAVLLAAFLFLMLVGEVMV
                     ALLLGAVAGAYLLPVQEWLERRLRARAGSAVITILLIVVPLIAFVAYGWHELSGYSEA
                     VRGRREEIIGAVSASLSNYVAVENTRAFLQQAFTEAVVRSGAAVEELREKSVLLLVSA
                     TIFFFTVFYVLTQRARLASYIKLRIPGEFLPLYERLGENVGGALRGALFAVMVDQTAK
                     ALVIFVLNLVFGVPLAVALALLTFLIGFFPLLGEWAVYIPISIYLLVFRDDPTAAAVY
                     MLIGVMMTAASSLVLRPKLAARGAGRFNFYWMLVGLVAGFHAFGIPGVVLGPAILGFA
                     KAIMDTLVGDVKYETSLLKEEREQAAEDEGDGGSEATAGGPARAAD"
BASE COUNT          455 a          830 c          855 g          365 t
ORIGIN      
        1 gggcacgttc ctcgtcgccg cctgcatcac caatggtgag cttgagatca aagactgccg
       61 ccccgaacat tcggccatcg tcatcgcgaa gctgcgcgag gcgggcgtgg agatcgagga
      121 gatcaaccag aacaccttgc acgtgcgctg cgggagcagc gggctgaggg ggcgcgacgt
      181 gacgaccgag ccgcacccgc gttttcccac ggacatgcag gcgcagtaca tggcgctgat
      241 gacgcaggcc gcggggacga gccacatcac cgagacgatc ttcgagaacc gcttcatgca
      301 cgcctccgag atgcagcgca tgggcgcgcg catccacatc agcgggcgca cggccgtcgt
      361 cgaaggcccg tcgcggctcg cgggcgcgcg cgtgcaggcg tcagaccttc gcgcctcggc
      421 ctgcctcgtg ctcgcggggc tggcggcggg cggcgagacg acgattgacc gcgtctatca
      481 catagaccgc ggttacgaga agatcgagtc gaagctgcgc tcggtcggcg cagacattga
      541 gcgcgtgcgc gagtccgtta cggcgcaact cccgccggtc gaaacggtcg ccgcgcagcg
      601 tgaggcggag gccggcgcgg tttgacgaaa gttaccgtga aggaagagtt gagggcgcgg
      661 gtgctggcga tggtgctcgc ggcggtgctc gtctggtaca cgtccctggt gccggcgggc
      721 gccccggcgc gagtcatacg cccgcgctcg cccgaggacg acgaagggcg cggcggcgag
      781 tcgcggcccc gtcgtgcgcc gcagggcgaa gctatcgaag agctcgactg gccggagtac
      841 atcgggctgg attgaggcgg ggcttatggc tgagagtcag gactgcatct tctgcaaaat
      901 cgcggcgggc gaaatcccct cgggcaaggt cttcgaggac gagcgcgccg tcgccttccg
      961 cgacataaac gcgcaggcgc ccactcacgt gctcgtcatc ccgcgcgagc acgtcgcgtc
     1021 gctcgaagag gctggcgacg cgcaggagtc aatgctcggc cacctgctgc tcgtcgccgc
     1081 ccgcgtcgcc cgcgagcagg ggctgaagga ttcgggctac cgcaccgtca tcaacaccgg
     1141 cgcgggcgcg ggccagtcgg tcttccacct gcacctgcac gtcctgggcg gccgcccgct
     1201 ctcctggccg cccggctaat ccgccgcgcg cgcaggccct cccgccgtcg cctcactacc
     1261 cccgtcgcct tcgtcctccg cggcctgctc tctctcttcc ttcaggaggg aggtctcgta
     1321 tttaacgtcc ccgaccaggg tgtccatgat ggccttagcg aacccgagga tggcggggcc
     1381 gaggaccacg ccgggtatgc cgaaggcgtg gaacccggcg acgaggccaa cgagcatcca
     1441 gtagaagttg aagcggcccg cgcccctcgc ggcgagctta gggcggagga cgagcgaaga
     1501 ggcagccgtc atcattacgc ctatcagcat atagacggcc gcggccgtcg ggtcgtcgcg
     1561 gaagacgagc aggtagatgc tgatggggat ataaaccgcc cactcgccga ggagagggaa
     1621 gaagccaata aggaaagtca gtagcgcgag cgcgaccgcg agcggcacgc cgaagacgag
     1681 gttgagcacg aagatgacaa gggccttcgc cgtctggtca accatcaccg cgaagagcgc
     1741 gccgcgcaaa gcgccgccca cgttctcgcc gagccgttcg tagagcggga ggaactcgcc
     1801 ggggatgcga agctttatgt aggaggcgag gcgcgcgcgc tgagtcagca cgtagaagac
     1861 ggtgaagaag aagatggtcg cggagacgag gaggaggact gacttttccc tcaactcctc
     1921 gacggccgcg cccgagcgca ctacggcctc ggtgaacgcc tgctgtagga aggcgcgcgt
     1981 gttctcgacc gccacgtagt tcgagagcga cgcgctgacg gccccgatta tctcctcgcg
     2041 cctgccgcgg actgcctcgg agtagcccga aagctcgtgc cagccgtagg cgacgaaggc
     2101 gatgagcggg acgactatca gcagtatcgt tatcacggcg ctcccggcgc gcgcccgcag
     2161 gcgccgttcc agccactcct gcacgggcag gaggtacgcg cccgccaccg cccccaggag
     2221 cagcgccacc atcacctcgc cgacgagcat gaggaagagg aacgcggcca aaagcacggc
     2281 cgccgcgtag acgagcgccc gccgcgcctc gcccaccgtc aactcgctca gccgcctcga
     2341 atcgtcgccg tcagccattg cgggcaactg taacagacgt aaatcgcgaa tcgtaaatcg
     2401 cgagtcgtta aaggccgttc cttcggttca cggtttacga ctcgcgattg acggctttcc
     2461 gccgtttgtg cccgcggccg aagggcgcta aactctccgt ttcgg
//
LOCUS       DASPKR010000057         5783 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_913187, whole genome shotgun sequence.
ACCESSION   DASPKR010000057 DASPKR010000000
VERSION     DASPKR010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5783)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5783
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_913187"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /locus_tag="VD968_01755"
     CDS             complement(<1..279)
                     /locus_tag="VD968_01755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13146.1"
                     /translation="MATKKKASAKKAGAKKGGAKSSRKARALNLQPTIKPSAVVAAAE
                     TPSEFSQIPEQVQAFLRQTPVLRAPSAKPLGLTDLRKRVTEINARPTVS"
     gene            complement(524..739)
                     /locus_tag="VD968_01760"
     CDS             complement(524..739)
                     /locus_tag="VD968_01760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13147.1"
                     /translation="MSPPFNCFEPFAPTCGFARKAACRTRARRTPAEETLEDRVGVRL
                     RSRLYEMCRTVELDGDDYRKQLDAGKS"
     gene            723..1787
                     /locus_tag="VD968_01765"
     CDS             723..1787
                     /locus_tag="VD968_01765"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HYE13148.1"
                     /translation="MNGGDNSVMVEGVLPLELGGRRAARVLVAEREVEMREQALADRE
                     RTLAAEARMKFGEVLAEILKLGFTDDQLNAARRGYRLVNARVFEGRSAPLERSMTLVE
                     VNRLRSMREAAEGRVQVAMLELKNVVGMAPEEPLRLRGDFIELIGDLPPLAEATEQAL
                     ATRPDLRAARAAEALAEAQVEQARAEGRPDASLRAGYQRMKQGFMVNGIDERGRPAPV
                     EMTSHSVTFGVMIDLPVRNKNQGTIEAAVAQGEAARRRREFLELTIRREVAAAYARYE
                     KSARAMEIFRVGVRGQADANLEVIRKTYELGSKTLLDYIAEQRRYYEVESEFVDAVLG
                     TYRARVEISRASGSPELIKR"
     gene            1796..3172
                     /locus_tag="VD968_01770"
     CDS             1796..3172
                     /locus_tag="VD968_01770"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYE13149.1"
                     /translation="MEEEREEKVAETETREAAGGARVEKVRAEEVRVVREPRRKDKTA
                     VVAAVAVVAVAALALVLWLLSRGGAAGRVVPAPRSVAAPGAATTGGEAVVTSEPTVTV
                     SQESAARSGIKVEPVGEALAAEGGAAGQVATGVVQANAYRATPVVSLVGGILRRVDAE
                     LGQQVQRGQAVAVVFSDELAMAQSKYLTAVAELDEHHRHHRRTAQLVEIGAESREEME
                     QATTKLKTAESEVAAQRQRLQLLGLTPQRIAALRSPAQISSEVTLPAPVSGTVIERAA
                     NPGEVIEANKTVLRVADLSSVWVIGQVYEKDLARLSVGSGASVTSDAYPGRVFRGRVT
                     YVGPQLDPATRTAQARVELGNPGHALKIGMFVNVAFGSTGAAEATAPTVPASAVQNIN
                     NRQVVFLATQDPNTFIMRPVRLGAESNGRYPVLEGLFVGDRVVTEGSFMLRAEWLKLN
                     PGGGQQHH"
     gene            3204..3785
                     /locus_tag="VD968_01775"
     CDS             3204..3785
                     /locus_tag="VD968_01775"
                     /inference="COORDINATES: protein motif:HMM:NF021587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HYE13150.1"
                     /translation="MSNERERHERQAGAREEKRAQFAEGNKGGWGGVKIVALIVALAA
                     AAGYLVFANVGGDDAARPTKAAEVKATGADVGAGAGEVRVPLKDLEGGKAVFFEPELA
                     GGKSVRFFVVKAADGSYRAALDACEVCFHAKKGYEQKGSDMICRNCGRNFPVSDIGPH
                     NEGGCHPIALARTIEGDHLVIKASELEKGASYF"
     gene            3814..5085
                     /locus_tag="VD968_01780"
     CDS             3814..5085
                     /locus_tag="VD968_01780"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HYE13151.1"
                     /translation="MRISTIALANLRRRKGKALFLVAGISIGIATAVALLTLSGMIRE
                     EIGLQLDQYGANIVVVPKSNQLALDYGGVQVSGVAFDVSQLKDEDARRVHEIPYRNRL
                     AVVAPKILGAVEAEGRQVLLAGVDFEEEFKLKRWWRLVGERPAGEGDLLLGYDVAQAL
                     SLVEHVMEDKSFPVAPGAADVVDAGGSGSHAHHASGGYFRLVRDRVGVAGREFRVAGV
                     LTPTGGREDSMIFGRLQDVQALLGRPGQLSLIEVSALCQDCPVEDIVAQIAAQLPNAK
                     VSAIQQAVRARTETVERLTRFALAVSGVVLLIGGLMIFTTMTGAVVERTKEIGVLRAI
                     GFRRAHIIRGLMLEVLLVSTAGGLLGWASGLLASRALLPYFSQTGLGLSVDPKLALFS
                     VLAALAIGAASSVYPVLRASRLDPSEAVRYV"
     gene            5100..>5783
                     /locus_tag="VD968_01785"
     CDS             5100..>5783
                     /locus_tag="VD968_01785"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE13152.1"
                     /translation="MSFVVVKDVSKVYRAGGAASAETRVLSGVSVEVREGEFVSLMGP
                     SGSGKSTLLTVIGAMNRPTSGRLIVDGIDVYALSEERRADFRREYLGFVFQQHHLMPF
                     LTAAENVMLPLAILSMSAKEKRERAMSVLGKVGLGGKAARLPSQLSGGEQGRLAIARA
                     IVNDPPLLLADEPTGTLDTRTGEEVMRVLLDLNASGQTVFMVTHNPSNAALAHRVLNI
                     RDGRLCGEGI"
BASE COUNT          928 a         1877 c         2096 g          882 t
ORIGIN      
        1 cgacacggtg ggtctcgcgt tgatctcggt cacgcgcttg cgcaggtctg tgagcccgag
       61 cggcttggcg ctgggcgccc tgagcacggg agtctgcctc aggaacgcct gcacctgctc
      121 ggggatttgc gaaaattccg agggcgtctc ggccgcggcc acgaccgcgg acggcttgat
      181 ggtcggctgt aggttgagcg cgcgggcctt cctggaagac ttcgcgccgc ccttcttggc
      241 cccggccttt ttcgccgagg ctttcttttt ggttgccatg ctcttgtacc tctctcgaag
      301 ggttggtggg acgagtgact ctgaaccgag acaaggaact ccgaacgcgg cgcaattcac
      361 atgcctcgcg gggcggggcg ggaaatgtgc attaatgtac ctcgctcggc ggcgggcggc
      421 tcgggcgaga cttaaatacg agacaggccg tccacatttg tagacggccc gcgggcgcga
      481 gactctgtaa ctgttcgtcg gaggagacgg gcggcgcggc cgtttacgac ttgcccgcat
      541 cgagctgctt gcggtagtcg tcgccgtcca gctcgacggt gcggcacatc tcgtagaggc
      601 gggagcggag gcggacgccg acgcggtctt cgagggtctc ttccgcgggc gtgcggcgcg
      661 ctctggttcg gcaggcggcc ttgcgcgcaa acccgcaggt cggggcgaat ggctcgaagc
      721 agttgaacgg cggcgacaac tccgtgatgg tcgagggcgt gctgccgtta gagctcggcg
      781 gccggcgcgc ggctcgcgtg ctcgtcgccg agcgcgaggt cgagatgcgc gagcaggcgc
      841 tggccgaccg cgagcgcacg ctcgccgccg aagcccgcat gaagttcggc gaggtgctcg
      901 ccgagatact caagctcggg ttcacggacg accaactgaa cgccgcccgg cgcggctacc
      961 gcctcgtcaa cgcccgcgtc ttcgagggcc gcagcgcccc ccttgagagg agcatgactc
     1021 tcgtcgaggt caaccgcctg cgctcgatgc gcgaggccgc cgagggccgc gtgcaggtcg
     1081 ccatgctcga attgaagaac gtcgtcggca tggctcccga agagccgctc aggctccgcg
     1141 gcgacttcat cgagctaatc ggcgacctgc cgccgctggc cgaggccacc gagcaggcgc
     1201 tcgccacccg ccccgacctc cgggccgcgc gcgcggccga ggcgctcgcc gaggcgcagg
     1261 tggagcaggc ccgcgccgaa ggccgccccg acgcctccct gcgcgcaggc taccagcgca
     1321 tgaagcaggg cttcatggtc aacggcattg acgagcgtgg ccgccccgcc cccgtcgaga
     1381 tgacctcgca ctccgtcacc ttcggcgtga tgattgacct gcccgtccgg aacaagaacc
     1441 aggggacgat agaggcggcg gtcgctcaag gagaggcggc gaggcgcagg cgcgagttcc
     1501 ttgagctgac catccggcgc gaggtggccg cggcctacgc gcgctacgag aagtcggccc
     1561 gggcgatgga gattttccgc gtcggcgtgc gcgggcaggc cgacgccaac ctcgaagtca
     1621 tacgcaagac ctacgagctg ggctcaaaga ccctgctcga ctacatcgcg gagcagcggc
     1681 gctactacga ggtcgagtcg gagttcgttg acgcggtgct cggcacatac cgggcgcgcg
     1741 tggagatcag ccgcgcgtcg ggctcgccgg agctgataaa gaggtgagtg tgggcatgga
     1801 agaagagcgc gaagaaaaag tcgccgagac tgagacgcga gaggcggccg gcggcgcgcg
     1861 cgtcgagaaa gtgcgggccg aggaggtaag ggtcgtcaga gagccgcgca ggaaagacaa
     1921 gactgccgtc gtcgccgcag tcgccgtggt cgcagtcgcc gcgctggcgc tagtgctctg
     1981 gctgctctcg cgcgggggcg cggcggggcg cgttgtgcct gcgccgcgct cggtcgccgc
     2041 gcccggcgcg gccacgacgg gcggcgaggc ggtcgtgacc tccgagccga ccgtcacggt
     2101 ctcgcaggag tcggccgcgc gctccggcat caaagtcgag ccggtgggcg aggccctcgc
     2161 ggccgagggg ggcgccgccg gtcaggtcgc tacgggcgtc gtgcaggcga atgcctaccg
     2221 ggccacgccc gtagtctcgc tcgtcggcgg catactccgg cgcgtggacg ccgagctggg
     2281 ccagcaggtg cagagggggc aggcggtcgc cgtcgtcttc agcgacgagc tcgcgatggc
     2341 gcagtcgaag tatctgacgg cggtcgcgga gctggacgag caccacaggc accaccggcg
     2401 caccgcgcag ctcgtcgaga taggggcgga gagccgcgag gagatggagc aggctacgac
     2461 gaaattgaag acggccgagt cggaggtcgc cgcgcagcgc cagcgcctgc aactcctcgg
     2521 cctcaccccg cagcgcatag ccgctttgcg ctcgcccgcg cagattagct ccgaagtaac
     2581 tctccccgcg cccgtctccg gcaccgtcat cgagcgcgcc gcgaacccag gcgaggtcat
     2641 cgaggcgaac aagaccgtcc tgcgcgtcgc agacctgtct tccgtgtggg tcatcgggca
     2701 ggtctatgaa aaagacctcg cgcgcctgag cgtcggcagc ggcgcgtccg tgacgagcga
     2761 cgcctacccc ggccgggtct tccgcggccg cgtcacatac gttggcccgc agctcgaccc
     2821 ggccacgcga acggcgcagg cgcgcgtgga gcttgggaac cccggccatg cgctaaagat
     2881 aggcatgttc gtcaacgtcg cgttcggctc gacgggcgcg gccgaggcga cggcgcccac
     2941 cgtgcctgca tcggccgtgc agaacataaa caaccggcag gtggtattct tagccaccca
     3001 ggacccgaac actttcatca tgcggccagt gcggctcggg gccgagtcga acggccgcta
     3061 ccccgtgctc gaagggctct tcgtgggcga ccgcgtcgtc accgagggca gcttcatgct
     3121 cagggccgag tggctgaagc tcaaccccgg cggcggccaa cagcatcatt agaactgaca
     3181 accgaaacta caacggagga gttatgagca acgagagaga acggcacgaa agacaggcgg
     3241 gcgcgcgcga ggagaagagg gcgcagttcg ccgagggtaa taagggcggc tggggcggcg
     3301 tgaagatcgt cgccctcatc gtcgccctcg cggcagccgc tggctacctc gtcttcgcga
     3361 acgtcggcgg cgacgacgcg gcgcgcccga cgaaggccgc ggaggtgaag gcgacgggcg
     3421 ccgacgtggg cgcaggcgcc ggggaggtgc gcgtccctct gaaagacctt gagggcggca
     3481 aggccgtctt cttcgagccg gagcttgcgg gcggcaagag cgtccgcttc ttcgtcgtca
     3541 aggccgccga cggcagctac cgcgccgcgc tcgacgcctg cgaggtctgc ttccacgcca
     3601 agaagggcta cgagcagaag ggctccgaca tgatctgccg caactgcggt cgcaacttcc
     3661 ccgtcagcga cataggcccg cacaacgagg gcggctgcca ccccatcgcg ctcgcgcgca
     3721 ccatagaggg cgaccactta gtcatcaagg cgagcgagct ggagaagggc gcctcgtatt
     3781 tctaggccgc tcgcgggcgg gggagtttga gtgatgcgga taagcacaat agcgctggcg
     3841 aacctgcggc gccgaaaggg caaggccctc ttcctggtcg ccggcatctc tatcgggata
     3901 gcgacggccg tggcgctcct gaccttaagc gggatgatac gcgaggagat cggccttcag
     3961 ctcgaccagt acggcgccaa catcgtcgta gtgccgaagt ctaaccaact ggcgctcgac
     4021 tacggcggcg tgcaggtctc gggcgtggcc ttcgacgtga gccagttgaa ggacgaggac
     4081 gcgcggcgtg ttcacgaaat accgtaccgc aaccggctgg ccgtcgtcgc gccgaaaatc
     4141 ttaggcgccg tcgaggccga aggccggcag gttctcctcg ctggcgttga cttcgaggag
     4201 gagttcaagc tcaagcgctg gtggcgcctc gtcggcgaga ggcccgcggg cgagggcgac
     4261 ctgcttctgg gctacgacgt ggcgcaggcg ctctcgctcg tcgagcacgt gatggaagac
     4321 aagtccttcc ccgtcgcgcc gggcgcggcc gacgtggttg acgcgggcgg ctcgggttcg
     4381 cacgcgcacc acgcctcggg cggctacttc cgcttggtgc gcgaccgcgt gggcgtggcc
     4441 gggcgcgagt tccgcgtcgc gggcgtgctg acgcccacgg gcgggcgcga ggactcgatg
     4501 atcttcggcc ggcttcagga cgtgcaggcg cttctgggca ggcccggcca gttgagcctc
     4561 atcgaggtga gcgcgctctg ccaggactgc cccgtcgagg acatagtggc gcagatagcg
     4621 gcgcagctac ctaacgcgaa ggtctccgcc atccaacagg ccgtgcgcgc gcgcacggag
     4681 acggtggaga ggctgacgcg cttcgcgctc gccgtctctg gcgtggtgct cctcatcggc
     4741 gggctgatga tcttcacgac gatgacgggc gccgtcgtcg agcgcacgaa ggagataggc
     4801 gtgctgcgcg cgataggctt ccggcgcgcg cacatcatcc gggggctgat gttggaagtc
     4861 ctgctggtga gcacggcggg cgggctgctc ggctgggcct cggggctcct ggcgagccgt
     4921 gcgctcctgc cttacttcag ccagaccggc ctcgggcttt cggttgaccc gaagctcgcg
     4981 ctcttctccg tgctggcggc gctcgcaatc ggcgcggcga gcagcgtcta tccggtcttg
     5041 cgcgcctcgc ggctcgaccc gtccgaggcc gtccgctacg tttgaagggg gttttgggaa
     5101 tgtctttcgt agtcgtcaaa gacgtgagca aggtctatcg cgcggggggc gcggcgtcgg
     5161 ccgagacgcg tgtgctctcg ggcgtgagcg tcgaggtgcg cgagggcgag ttcgtctcgc
     5221 tgatggggcc ttcgggctcg ggcaagtcaa cgcttttgac cgtaatcggc gccatgaacc
     5281 gccccacctc ggggcgattg atagttgacg gcatagacgt ttacgccctg tccgaggagc
     5341 gccgcgccga cttccgccgc gagtacctag gcttcgtctt ccagcagcac cacctgatgc
     5401 cgttcctgac cgcggccgag aacgtgatgc tgccgctcgc catcctgagc atgagcgcga
     5461 aggagaagcg cgagcgcgcg atgtctgtgc tcgggaaggt ggggctcggg ggcaaggccg
     5521 cgcgcctgcc gtcgcagctc tcgggcggcg agcaggggcg cctggcgatt gcgcgcgcca
     5581 tcgtcaacga cccgccgctg ctgctggccg acgagccgac tgggacgctc gacacgcgga
     5641 cgggcgaaga ggtgatgcgc gtcttgctcg acctcaacgc ctcggggcag accgtcttca
     5701 tggtcacgca caacccctcg aacgccgcgc tcgcgcacag ggttctgaac atacgggacg
     5761 ggaggctctg cggcgaggga atc
//
LOCUS       DASPKR010000058         2078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_525305, whole genome shotgun sequence.
ACCESSION   DASPKR010000058 DASPKR010000000
VERSION     DASPKR010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2078)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2078
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_525305"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2078
                     /locus_tag="VD968_01790"
     CDS             <1..>2078
                     /locus_tag="VD968_01790"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SBBP repeat-containing protein"
                     /protein_id="HYE13153.1"
                     /translation="FGEAIAVDSSGNAYVTGNTFADNFPTVNPVQATFGGGGTDAFVT
                     KINAAGTAFVYSTYLGGSGMVGSTQPETGFGIAADSAGNAYVTGETNSNTGFPLANAI
                     QGTFGGGVSDAFVTKINAAGDAFVYSTYLGGGAQDAGEGIKADASGNTYVAGFTVSNN
                     FPIANAFQGTFGGVQDAFVTKLNPTGSALVYSTYFGGTGGEIAFGIAIDASGSVHLAG
                     STGSFNSLPTANAIQCARNSGQDLFITKFNAAASALVYSTYLGGSGTDSGEGIALDPS
                     NNAYIAGTTTSTDFPTVSPIQSANSGGPFGDAYVTKISDTSTGPVSSLQLTQTAPSVQ
                     EDVTSLTLTVQRTGDTSGPVTVDYATADGTASERSDYTTAVGTLRFAAGETSKTIDIL
                     VNEDSFVEGNETFTVTLTNATGGATLSCANAVATVQITDDAAEPATNVIDDPVIFTGQ
                     HYHDFLNRQADSDGLAFWADQITACGSDSACVDARRANVSAAFFLSIEFQQTGYLVFR
                     FYKGTFADSSGRPRGMPRYREFLRATQEIQRGVIVGEGDWQARLEANKQEFARRWVTS
                     PEFVAQFPETMTAAEFVDKLFANYEVTPTQAERDAAIAAFGAGGTEGRAAALRSVADS
                     GSVYNRQFNAGFVLAQYIGYLRRNPNDAPDTNYAGFDFWLAKMNSFSLPGEDVRDETV
                     ALSRVNRAEMV"
BASE COUNT          370 a          748 c          627 g          333 t
ORIGIN      
        1 tttggcgagg ctatcgcggt tgattcgtcg ggcaacgcct acgtcaccgg gaacaccttc
       61 gcggacaact ttcccacagt caaccccgtt caagccacgt tcggcggcgg cgggacggat
      121 gccttcgtca ctaagatcaa cgcggcgggt acggccttcg tctattcgac ttacctcggc
      181 ggctccggca tggtcggcag cacccaaccg gaaaccggct ttgggatcgc ggctgactcc
      241 gcgggcaacg cttacgtcac cggagaaacc aactcaaata ctggcttccc cctcgccaac
      301 gccattcaag gcactttcgg cggcggcgtc tccgacgcct tcgtcaccaa gatcaacgcg
      361 gcgggcgacg cgttcgttta ctcgacttac ctcggcggcg gcgcgcagga tgccggcgaa
      421 ggcatcaagg ccgacgcgtc cggcaacaca tacgtcgccg ggttcaccgt gtcaaacaac
      481 tttcccatcg ctaacgcctt ccaaggcacg ttcggcggcg ttcaggacgc tttcgtcacc
      541 aagctcaacc ccaccggctc cgcgctcgtc tattcaacct acttcggcgg cacgggcggc
      601 gagatcgcct tcggcatcgc gattgacgcc tccggcagcg tgcacctcgc gggaagcacc
      661 ggctccttta acagccttcc gacggccaac gccattcagt gcgcgcgcaa cagcggccaa
      721 gacctcttca tcacgaagtt caacgcggcg gcttcggcgc ttgtttactc gacctacctc
      781 ggcggcagcg gcacagacag cggcgaaggc atcgcgctcg acccgtcgaa caacgcttac
      841 atcgccggca caaccacttc gaccgacttc cccacggtca gccccatcca aagcgcgaac
      901 agcggcgggc cgttcggcga cgcctacgtg acgaaaatca gcgacacttc gacggggccg
      961 gtctcttcgc tccagctcac gcagacggcg ccctcggtgc aggaggacgt gacttcgctc
     1021 acgctcaccg tccagcgcac cggcgacacc tccggccccg tcaccgtcga ctacgcgacc
     1081 gccgacggca cggcctcgga gcgctccgac tacacgaccg ccgtcggcac gctgcgcttc
     1141 gccgcgggcg agacgtctaa gacgattgat atcctcgtca acgaggactc gttcgtggaa
     1201 gggaacgaga cgtttaccgt aacgctcact aatgcgacgg gcggcgcgac gctctcgtgc
     1261 gcgaacgcgg tcgccacagt ccagattacg gacgacgccg cggagcctgc gaccaacgtg
     1321 attgacgacc ccgtcatttt cacgggccag cactaccacg acttcctcaa ccggcaggcc
     1381 gactccgacg gcctcgcctt ctgggcggac cagataacgg cctgcggctc cgactcggcc
     1441 tgcgttgacg cgaggcgcgc caacgtctcg gcggccttct tcctctccat tgagttccag
     1501 cagaccggct acctcgtctt ccgcttctac aaggggacgt tcgccgactc gtcggggcgg
     1561 ccgcgcggga tgccgcgcta ccgcgagttc ctgcgcgcca cgcaggagat tcagcgcggc
     1621 gtcatcgtgg gcgagggcga ctggcaggcg cggctggagg cgaacaagca ggagttcgcc
     1681 cgccgctggg tcacgagccc cgagttcgtc gcgcagttcc ccgagacgat gaccgcggcg
     1741 gagttcgtgg acaagctctt cgcgaactac gaggttacgc ccacgcaggc cgagcgcgac
     1801 gcggccatcg ccgccttcgg cgcgggcggc accgaaggcc gggccgccgc cctgcgcagc
     1861 gtcgccgaca gcggctccgt ctataaccgg cagttcaacg cgggcttcgt gctggcgcag
     1921 tacataggct acctgcggcg caacccgaac gacgcgcccg acacgaacta cgccggcttc
     1981 gacttctggc tggcgaagat gaactccttc agcctgccgg gcgaggacgt gcgcgacgag
     2041 accgtggcgc tctcgcgcgt caaccgtgcc gagatggt
//
LOCUS       DASPKR010000059         2057 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1818519, whole genome shotgun sequence.
ACCESSION   DASPKR010000059 DASPKR010000000
VERSION     DASPKR010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1818519"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..976
                     /locus_tag="VD968_01795"
     CDS             <1..976
                     /locus_tag="VD968_01795"
                     /inference="COORDINATES: protein motif:HMM:NF012271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HYE13154.1"
                     /translation="YSDTGLQPATAYHYRVAAFNSTVDSGYSNTASAQTTDYPPAAPS
                     GLTAVAAAGGQISLSWADNSSNETGFDIDRCAGAGCTSFQTRAETPANTSTFNDGGLT
                     AGVVYRYRVRAFNGSGDSDFSNEAEATATGGTTQGKPAAPSNMSAAAVSSTQINLNWA
                     DNSTNEDGFKLYRSPDNVTFSRIATLGAGATSYSDGGRAAGTTYYYRVLAYNSSGNSP
                     HSNTASATTFPPAPAPPAAPTNLVATALSGTQVRLTWADNSTNEDGFRLYRSTDGKKF
                     AQVAKPAANVTAYTDSGLSSGQTYYYRARSYNSAGNSGNSNIAKVTTP"
     gene            997..>2057
                     /locus_tag="VD968_01800"
     CDS             997..>2057
                     /locus_tag="VD968_01800"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HYE13155.1"
                     /translation="MSSEVGDRLQVGVAARPVVRVVVREPAEPAAVVRWLFYAFAFSL
                     PFETVGEGFFEPPTILGGLLLASTLLQPGLFLRWPPAGVWCFAAYLYLFATLGALEPS
                     QYRPELLRSVFLLAQLLLLCWMAYCLMLDRRVAERALLALAAACALLALLQVTGVASR
                     ATDVGARVERVTAFGFHPNNLARILTLGLLALVGLTYGRGRSFFQPVFLSWPLAALIG
                     VALIQTGSRGGLLALGVGLTTLVLRGGSAKAKILNALGVLAVAGFFAVASMQSEVMRQ
                     RFERTVEEGDLARREQIYPAAWAMFRERPLAGWGPVASTYELGSRLGHPEEDNKNPHN
                     MLLYALVSSGVAGAVPLLAG"
BASE COUNT          300 a          752 c          679 g          326 t
ORIGIN      
        1 ctactccgac acggggctac agccggcgac cgcttaccac taccgcgtcg cggccttcaa
       61 cagcacggtt gactcgggct actcgaacac ggcgagcgcg cagacgaccg actacccgcc
      121 ggccgcgccg tcgggcctca ctgcggtcgc ggccgcgggc gggcagataa gtttgagctg
      181 ggcggacaac tcgtcgaacg agaccgggtt cgatattgac cggtgcgcgg gcgccggctg
      241 caccagcttc cagacgcgcg ccgagacgcc cgccaacacg agcaccttca acgacggcgg
      301 gctcacggcc ggcgtcgtct atcgctaccg cgtccgcgcc ttcaacggca gcggtgactc
      361 tgacttctcg aacgaggccg aggcaaccgc caccggcggc acaacgcagg gcaagcccgc
      421 cgccccgagc aacatgtcgg cggcggccgt gtcgagcacg cagataaacc tcaactgggc
      481 ggacaactcg acgaacgagg acggcttcaa gctctaccgc tcgcccgaca acgtcacctt
      541 ctcgcgcata gcgaccctcg gcgctggcgc cacgtcctac tcggacggcg ggcgcgcggc
      601 cgggacgacc tactactacc gcgtgttggc ttacaactcg tcgggcaact cgccccactc
      661 gaacacggcc agcgccacga ccttcccgcc ggcccccgcc ccgcccgcgg ctccgacgaa
      721 cctcgtcgcc acggcgctct ccggcacgca ggtcaggctc acgtgggcgg acaactcgac
      781 gaacgaggac ggcttcaggc tctaccgctc gaccgacggc aagaaattcg cgcaggtggc
      841 caagccggcc gcgaacgtga ccgcctacac ggattcgggc ctttcgagcg ggcagaccta
      901 ctactaccgc gcccgctcct acaactcggc cggaaactcc ggcaacagca acatcgcgaa
      961 ggtgacgacg ccgtagggat gttcgtcagc ccgtctatga gttccgaggt cggtgacaga
     1021 ttgcaggtcg gggtcgcggc gcggcccgtc gtgcgagtgg tcgtgcgcga gccggccgag
     1081 cccgccgcgg tcgtgcggtg gctcttctac gccttcgcct tctcgctccc gttcgagacg
     1141 gtcggcgaag ggttcttcga gccgcccacc atcctcggcg gcctgctgct ggcgagcacg
     1201 ctgttgcagc cgggcctctt cctgcgctgg ccgccggcag gcgtctggtg cttcgccgcc
     1261 tacctctacc ttttcgcgac gctcggcgcg ctcgagccgt cacagtaccg ccccgagctt
     1321 cttcgcagcg tctttctgct cgcgcagctc ctcctgctct gctggatggc ctactgcctc
     1381 atgctcgacc ggcgcgtggc cgagagggcg ctgctggcgc tggcggcggc gtgcgccctt
     1441 ctggcgctct tgcaggtgac gggcgttgcg agccgggcga cggacgttgg ggcgcgcgtc
     1501 gagcgcgtga cggccttcgg gttccacccg aataacctcg cccgcatact gacgctgggc
     1561 ctgctcgcgc tcgtcggcct cacctacggg cgcgggcgta gcttcttcca gcccgtcttc
     1621 ctgtcgtggc cgctggcggc gctcataggc gtcgcgctca tccagacggg ttcgcgcggc
     1681 ggcctgctcg cgctcggcgt cgggctcacg acacttgtgc tgcgcggcgg cagcgcgaaa
     1741 gcgaagatac tcaacgcgct cggcgtgctc gccgtcgctg gctttttcgc ggtggcctcg
     1801 atgcagtccg aggtgatgcg ccagcggttc gagcgcaccg tcgaggaggg cgatctcgcc
     1861 cgccgcgaac agatttaccc tgcggcgtgg gcgatgttcc gcgagaggcc gctggcgggc
     1921 tgggggccgg tcgctagcac ctacgaactg ggctcgcgcc tcggccaccc cgaggaggac
     1981 aacaagaacc cgcacaacat gctgctctac gcgctcgtat cgtcgggcgt agcgggcgcc
     2041 gtgccgctgc tcgcggg
//
LOCUS       DASPKR010000060         5534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_913436, whole genome shotgun sequence.
ACCESSION   DASPKR010000060 DASPKR010000000
VERSION     DASPKR010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5534)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5534
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_913436"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1471)
                     /locus_tag="VD968_01805"
     CDS             complement(<1..1471)
                     /locus_tag="VD968_01805"
                     /inference="COORDINATES: protein motif:HMM:NF015052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3536 domain-containing protein"
                     /protein_id="HYE13156.1"
                     /translation="MTIALVVHGHFYQPPRENPWTGLIDREPGAEPFDDWNERIHAEC
                     YRPNAHARIVDERGRVVRIVNNYANLSFNFGPTLLAWLERQHPETYARIIGADRESAP
                     LRGGHGNAIAQGYHHAILPLCNERDRRTQVRWGVGDFRLRFGREPESLWLPETACDAP
                     TLETLIEEGLRFVILSPHQAARVRPLGAGDWLAVQGGSVNTSVPYKFFHRDGSGRSVA
                     VFFYDGPTARAIAFEGLLASSRALADAFASRAARSGGPLVSVATDGESYGHHFRWGDR
                     CIAYTLEEEARRRGFLVTNYGEFLDRHEPQFEVELAAGPGGEGTAWSCAHGLGRWSRD
                     CGCHSGAPAGWDQRWRAPLRAALDLLRDDFAAKFESVGGDLFRDAWAARDDYVEVLSG
                     REGAREAFLARHARRALPDGERVIAFTLLEAARATLAMYASCGWFFDDVAGLETLIVL
                     RQAGRAIELMEELSLAPPVASFLDALSEARSNVPEKGNGA"
     gene            complement(1617..2480)
                     /locus_tag="VD968_01810"
     CDS             complement(1617..2480)
                     /locus_tag="VD968_01810"
                     /inference="COORDINATES: protein motif:HMM:NF022750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HYE13157.1"
                     /translation="MPRRSLLVATAAAVISIVLSSIALASDTPREHTPEKAPVPAVMP
                     FEPSEQLVYEGEFSKLLLRGIKIAELKFTASRPAAGAQGDGQPQPLLLTTHVESKGWF
                     RKLFGINFTYHVESTVQPDGFHALKTSKIDEQGKRLRTSEAVFDMSTKRVEWTERDPN
                     NQAQPPRVVTAALEGPTQDIVSAVYFLRTQPLTPGQSFNIAISDSGRVYQVPARVVAE
                     KKAMKSVLGKVPVVRIEVDLFGEGRPVEGKGKMNIWVTNDERHVPVKARLSHDMGQLD
                     LTLRSHGRAPQ"
     gene            complement(2510..3088)
                     /locus_tag="VD968_01815"
     CDS             complement(2510..3088)
                     /locus_tag="VD968_01815"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HYE13158.1"
                     /translation="MARRGGTWAQRWRVPLGFLCAAIFLALARPRPWTLAAGGAVALL
                     GLLIRAWAAGHIRKNDRLAVTGPYAYTRNPLYLGSFVLGLGFTVAASSSLWLLAALGG
                     AFALLFMGIYLPVMRVEAATLGELFGDEYRRYAEAVPLFLPRLTPYRSAAGGETKFDA
                     GLYLRYREYRAALGLLLAWGVLALKAVLAGLK"
     gene            complement(3078..4163)
                     /gene="waaC"
                     /locus_tag="VD968_01820"
     CDS             complement(3078..4163)
                     /gene="waaC"
                     /locus_tag="VD968_01820"
                     /inference="COORDINATES: protein motif:HMM:TIGR02193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HYE13159.1"
                     /translation="MRILFVKLGSIGDIVHTLPALAAVRRALPRAEISWAVERRAAEI
                     LRDNPLINTLIELDTKALRRVPMSGETLLAPRQQLRRLRASAFDIALDFQGLLKSAAV
                     ALLSGAPRRVGFSRGGLREPASRFLLTERVEVPSRTHVIRKNLALAEGALGVRAPESA
                     DDFEFHVAVAREHEREADGIIQISGREFAILNPGGGWPTKLWDAARFGALADQLYLRH
                     GLRSVVTYGPGERELAERVADGSRAGAAVPAGPTLKGFVSLASRARLYVGGDTGPTHL
                     AVAAGAPVVGLFGPTEWWRNGSPRADDVCVERDDIGCRTDCHRRSCSEWVCMDISVAR
                     ALKAAAERLARARAAAGAAVEVQDVGA"
     gene            complement(4207..4716)
                     /locus_tag="VD968_01825"
     CDS             complement(4207..4716)
                     /locus_tag="VD968_01825"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HYE13160.1"
                     /translation="MPEAEGNQRQTAAARILERNRLIARVAIARKGGARVVFANGCFD
                     LLHVGHVRYLEAARALGDILVVGINGDEQVRRLKGQGRPFVPERERAEVIASLRAVDY
                     VTVFHEPTVTELLLALRPDIHAKGTDYTEETVPERDVVRSYGGRTRIVGDPKDHSSTE
                     MLGKVTGDD"
     gene            complement(4722..>5534)
                     /locus_tag="VD968_01830"
     CDS             complement(4722..>5534)
                     /locus_tag="VD968_01830"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HYE13161.1"
                     /translation="MNLASLGARAAIVGAVGDDETGRALLDKLEAAGVDCGGVIVRPG
                     LRTTTKVRILAGQAHSPRQQVIRVDYEGGAGGEALAGELSARLGGVLASAEAVVVSDY
                     NYGAGGEAVTEFVRREAAGKILLADSRFRLEAFRGFTSATPNEEEVERWAGRPLEGVK
                     AVAEAGERLRALLGLRALLVTRGKNGFVLVEEGEDVFSAPAVGSHDAVDVTGAGDTVI
                     ATYALALASGASFRDAARLANHAGGIVVLKRGTATVSAAELLASVEGAGEAV"
BASE COUNT          861 a         1867 c         1942 g          864 t
ORIGIN      
        1 cggcgccgtt gcccttctcg gggacgttgc ttctggcttc ggagagggcg tcgaggaatg
       61 acgcgacggg cggcgcgagg ctcagctcct ccatcagctc aattgcgcgc cccgcttggc
      121 gtagcacgat gagagtctcg agacccgcga cgtcgtcgaa gaaccagccg cagctcgcgt
      181 acatcgcgag cgttgcgcgc gcggcttcca ggagcgtgaa ggcgatgacg cgctcgccgt
      241 ccgggagcgc gcggcgcgcg tggcgcgcga ggaaggcttc gcgcgcgccc tcgcggcccg
      301 acaggacttc gacgtagtcg tcgcgcgcgg cccacgcatc ccggaagagg tcgccgccca
      361 ccgactcgaa cttcgcggcg aagtcgtcgc gcagaaggtc gagcgcggca cgcagcggcg
      421 cgcgccagcg ctggtcccag cccgcgggcg cgcccgagtg gcagccgcag tcgcgcgacc
      481 agcggccgag gccgtgcgcg caactccacg ctgtgccttc gccgcccggc cccgcggcaa
      541 gctccacctc gaactggggc tcgtgtcggt ctaggaactc gccgtagttc gtgacgagga
      601 aacccctccg ccgcgcctcc tcttcgagcg tgtaggcgat gcagcggtcg ccccagcgga
      661 agtggtggcc gtaggattcg ccgtcggtgg cgacgcttac gagcggcccg cccgagcggg
      721 cggcgcgtga ggcgaaggcg tccgcgagcg cgcggctcga agccagaagg ccctcgaagg
      781 cgatggcgcg cgccgtgggg ccgtcgtaga agaagacggc tacggagcgg ccggagccgt
      841 cgcggtggaa gaacttgtaa ggcacggacg tgttgacgga gccgccctgc acggcgagcc
      901 aatccccggc gccgaggggg cgcacgcgcg cggcctggtg cggcgagagt atgacgaacc
      961 tgagcccctc ttctatgaga gtctcgagcg tcggagcgtc gcaggccgtc tcgggcagcc
     1021 agagcgactc gggctcgcgc ccgaagcgca ggcggaagtc cccgacgccc caacgaacct
     1081 gcgtgcggcg gtcgcgctcg ttacaaaggg ggagaatggc gtggtggtag ccttgcgcga
     1141 tggcgttgcc gtggccgccg cgaagggggg cgctctcgcg gtcggccccg atgattcgcg
     1201 cgtaagtctc cgggtgctgg cgctccagcc acgcgaggag cgtcgggccg aagttgaagc
     1261 tcaggttggc gtagttattg acgatgcgca cgacgcggcc gcgttcgtca acgatgcgcg
     1321 cgtgggcgtt cgggcggtag cactcggcgt gtatgcgctc gttccagtcg tcgaagggct
     1381 cggcgcccgg ctcgcggtca atcaggccag tccaggggtt ctcgcgcggc ggctggtaaa
     1441 agtggccgtg aacgaccagc gcaatcgtca tcgaaggcgg ctccgtctgc gtcttggaaa
     1501 ggctcggggc aaagctaaca tgatttcggc gagaatcaaa cggggcgcaa agacgaaggc
     1561 ggggcgactc gctcgtagtc gccccgcctt cgcgttcctg cttgctcccg taaagtttac
     1621 tgcggcgcgc ggccgtggct gcggagcgtc aaatcgagct ggcccatgtc gtgggagaga
     1681 cgggccttga cgggcacgtg gcgctcgtcg ttcgtgaccc agatgttcat cttgcccttg
     1741 ccctcgacgg ggcggccttc gccgaagagg tcaacctcga tgcgcacgac ggggactttg
     1801 cccagcacgc tcttcatcgc cttcttctcg gccacgacgc gcgccggcac ctgatagacg
     1861 cggcccgagt cgctgatggc tatgttgaag ctctggcctg gcgtgagcgg ctgcgtgcgt
     1921 aggaaataga cggcggagac gatgtcctgc gttggccctt cgagcgccgc ggtgacgacg
     1981 cggggcggct gcgcctggtt gttcgggtcg cgctccgtcc actcgacacg cttggtgctc
     2041 atgtcgaaga cggcctcgct cgtgcgaagg cgcttgccct gctcgtcaat cttgctggtt
     2101 ttaagggcgt ggaagccgtc gggctgaacg gtggactcaa cgtggtaggt gaagtttatg
     2161 ccgaagagct ttcgaaacca gcccttcgac tcgacgtgtg tcgtgagcag gagcggctgc
     2221 ggctggccgt cgccctgcgc gcccgcggcc gggcggctcg ccgtgaactt gagctccgct
     2281 atctttattc cgcgcaaaag gagcttcgag aactcgccct catagacgag ctgttccgac
     2341 ggctcgaagg gcatcacggc cgggacgggc gccttctcgg gtgtatgctc tctgggcgtg
     2401 tcggacgcga gcgcgattga agagagtaca atcgaaatga ccgcggcggc cgtcgctacg
     2461 agtaaacttc ttcgaggcat agcgtttttt cctttttccc ctttggttct tacttaaggc
     2521 cggccagaac tgcctttagg gcaagcacgc cccatgccag aagtaagccc agcgccgcac
     2581 ggtactcccg atacctgaga tatagcccgg cgtcgaactt cgtttcgccg cccgcggccg
     2641 agcggtacgg cgtcagtctg gggaggaaaa gcggcaccgc ctcggcgtag cgccggtatt
     2701 cgtcgccgaa tagctcgccg agcgtcgccg cttcgacgcg cataacgggc aggtagatgc
     2761 ccatgaaaag gagcgcgaac gcgccgccca gcgccgccag aagccatagg ctcgaggacg
     2821 cggcgaccgt gaagcccaac cccagcacga agctccccag gtaaagaggg ttacgcgtgt
     2881 aggcgtaagg gcctgtgacg gcgagccggt cgttctttct tatgtggccg gccgcccatg
     2941 ctcttatcag caacccgagg agggcgacgg cgccgcccgc cgcgagcgtc catgggcgcg
     3001 ggcgcgcgag cgcgaggaag atcgccgcgc acaggaagcc tagagggacg cgccagcgct
     3061 gcgcccacgt gccgccccta cgcgccaacg tcctgcacct cgacagcagc ccccgcggcc
     3121 gcgcgcgcgc gggcgagcct ttcggccgcc gctttgagcg cgcgcgcgac gcttatatcc
     3181 atgcagaccc actcggagca ggagcggcgg tggcagtcgg tgcggcagcc aatgtcgtcg
     3241 cgctcgacgc acacgtcgtc ggcgcgcggc gagccgttgc gccaccactc ggtggggccg
     3301 aacagcccga cgacgggcgc gccggccgcg accgcgaggt gagtcggccc ggtgtcgccg
     3361 ccgacgtaca gacgcgcccg acttgcgagc gacacgaagc ccttaagcgt cgggccggcc
     3421 ggcacggcag cccccgcgcg agagccgtct gcgactctct cggccaactc gcgctcgccg
     3481 gggccgtatg tgacgaccga gcgcaggccg tgcctcaagt aaagctggtc tgccagcgcg
     3541 ccgaagcgcg cggcgtccca gagcttcgtg ggccagcccc cgccggggtt cagaatcgcg
     3601 aactcccgtc cagaaatttg gattatcccg tccgcctcac gctcatgctc gcgcgcgacg
     3661 gccacgtgga actcgaaatc gtcggcgctc tcgggcgcgc ggacgcccag agcgccttcc
     3721 gccagagcga ggtttttcct tatgacatgc gtgcgggaag ggacttcgac ccgctcggtg
     3781 agcaggaagc ggctggccgg ctcgcgcagg cccccgcgcg aaaagccgac gcgccgcggc
     3841 gcgcccgaaa gcagggcgac ggcggcggat ttaaggagtc cctggaagtc taaggcgatg
     3901 tcgaaggccg aggcgcgcaa ccgacgcaac tgctggcgcg gtgccagcag cgtctcccca
     3961 gacatcggca cgcgcctcag cgccttcgtg tccagttcga tgagagtatt tatgagcggg
     4021 ttgtcccgca gaatttcggc agcccgccgc tcgaccgccc aggagatttc cgcccgcgga
     4081 agcgcccgcc gcacggccgc cagggccggc agcgtgtgga cgatgtcgcc tatgctcccg
     4141 agtttgacga agagaatgcg cattaaaact caagacgagc gacgcccaag acggggccgc
     4201 cgtctttcaa tcgtctcccg tcactttgcc cagcatctcc gtgctcgaat ggtctttggg
     4261 gtcgccgacg atgcgcgtgc ggccgccgta ggatcgtacc acatcgcgct cggggactgt
     4321 ctcctccgtg tagtctgtgc ctttggcgtg aatgtcgggg cggagcgcca acagcagctc
     4381 cgtcacggtc ggctcgtgga agaccgtgac gtagtcaacg gcgcggagcg atgcgatgac
     4441 ctctgcgcgc tcgcgctcgg ggacgaaggg gcggccttgg cccttgaggc gccgcacctg
     4501 ctcgtcgccg tttatgccga cgacgaggat gtcgccgagc gcgcgggcgg cttcgaggta
     4561 gcggacgtga ccgacgtgca gcaggtcgaa gcagccgttg gcgaagacga cgcgcgctcc
     4621 gcctttgcgc gcaatcgcca cgcgcgctat cagccggttg cgctcaagga ttcgcgccgc
     4681 ggccgtctgc ctctggttgc cttccgcttc aggcataagt tttagacggc ctcgcccgcg
     4741 ccctcgaccg aggcgagtag ctcggcggcg ctcacggtcg ccgtgccgcg cttcaggacg
     4801 acgatgccac ccgcatggtt ggcgagccgg gcggcgtcgc ggaagctcgc gcccgaggcg
     4861 agcgcgagcg cgtatgtggc gattacggtg tcgcccgccc ccgtcacgtc aaccgcgtcg
     4921 tgcgagccga cggccggggc ggagaagaca tcctcgcctt cttcgacgag cacgaagccg
     4981 tttttgccgc gcgtaacgag cagcgcccgc aggccgagca gcgctcgcag gcgctcgccg
     5041 gcctcggcga cagccttgac gccttcgagc ggccggcccg cccagcgctc gacctcttcc
     5101 tcgttcggcg tggccgaggt aaagcctcgg aaggcttcga gccggaagcg cgagtcggcg
     5161 aggaggattt tgccggcggc ctcgcgccgc acgaactccg tcaccgcctc gccgcccgcg
     5221 ccgtagttgt aatcggagac gacgacggcc tccgccgacg cgagcacgcc gccgagccgc
     5281 gcgctcagct cgccggcgag ggcctcgccc ccggcgccgc cctcgtagtc aacgcgtatg
     5341 acctgctgcc gcggcgagtg tgcctggccg gcgagtatgc gcactttcgt cgtcgtgcgc
     5401 aggccgggcc ggacgatgac gccgccgcag tcaacgcccg cggcttcgag cttgtcaagg
     5461 agggcgcggc ccgtctcgtc gtcgccgacc gcgccgacga ttgcggcccg cgcgccgagc
     5521 gacgcgaggt tcat
//
LOCUS       DASPKR010000061        19403 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_525454, whole genome shotgun sequence.
ACCESSION   DASPKR010000061 DASPKR010000000
VERSION     DASPKR010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 19403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19403)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19403
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_525454"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..899
                     /locus_tag="VD968_01835"
     CDS             <1..899
                     /locus_tag="VD968_01835"
                     /inference="COORDINATES: protein motif:HMM:NF012407.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HYE13162.1"
                     /translation="LPEGALEMLSSEFDAVLAGAFGDPRVPSNCHAEDILLGMRRGLD
                     LYINLRPVRLLHPRLTPLRDRGVEEINFVVFRENTEGAYSGAGGFLKKGTPDEIATQE
                     ELNTRKGVERIVVAAFEYARSKGKRRVTMADKSNVQRFGGDLWQRAFREVAARYPEVE
                     ANHQYVDATAMFMVLDPAQYGVIVTSNLFGDILTDLGAALQGGLGLAASGNIHPGRVS
                     LFEPVHGSAPPLAGKSVANPAGAILSAALMLEYLGHDEAAAAVDGAVRESIAAGETTR
                     DLGGALSTGQAGAAVRERIRRE"
     gene            980..1735
                     /locus_tag="VD968_01840"
     CDS             980..1735
                     /locus_tag="VD968_01840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13163.1"
                     /translation="MTKGQETAQRLIAILVIMAMLAVMGIPPTVIVFFAVVVYFVWRA
                     VQRSEQQDIKNVFDFYVSAAEILRDDEKRWYGFEIQSVIAEGERICRLMPDAPPLVHF
                     ALGALHHRAGDYEAAAESLAFVLEDERGDENHRLSPSAELRRYVEVLRRIEREPTEAP
                     VTMAAVRSLERARRSRAAAMLEESRARLAGAAAAARPERPAIEQHPHAAKEDSGLHAL
                     PPKARPPVVPTPQAPPPITDVLRDLYEEEKKTA"
     gene            1788..3581
                     /locus_tag="VD968_01845"
     CDS             1788..3581
                     /locus_tag="VD968_01845"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE13164.1"
                     /translation="MQVEPGKRVGSYVIEEPVGRGGMGVVYRGRHATLPRAVAIKSIS
                     PRGAHDLRRMRSRFEREAFVQAQLDHPGVVKVYDYVVSEQTYFIVMEYVEGRSLAQLI
                     RQEGGPLEINRALDLFEQILSAIAYAHTFTYRDEHGATHHGIVHRDLKPPNIMVTPDD
                     RVKVTDFGIVKLVGAAATDTSNVAYGSPRYVSPEQAGGEPVGQRSDIYSLGTILYEML
                     TGEPPFGGPSGSKDMTRTEILRAHREQQPRPPSELNTEVTPEIERVVLRALEKKPERR
                     FASAADFLRALRRASGRDPSVADSAGASGHTSLKGGAGTGALGETTDEILQDAYHTQP
                     ISAGSCPECGAAAGAGDSVCATCGHDLTASPATADLARRDATARQARQGVKLFAAVGA
                     LSLLLISLVYFVRLRGLDSAREPKGAAVVVATPAPTTAAAPGRDEGVPAGPLALLGAA
                     VKVDSTFDSYNTRPLTDGVTDVREIASMRFNQGNWVSAESPDAHWIELDFGGRARVTA
                     VYLFWGFDRGRYMPSRRVELQVPDGGAGGWRAVSALDPGSNYDRAAFEFEPVTTARLR
                     VFQPPQQGPSNRPFVMWVREVQAFGTKESRQ"
     gene            3586..4821
                     /locus_tag="VD968_01850"
     CDS             3586..4821
                     /locus_tag="VD968_01850"
                     /inference="COORDINATES: protein motif:HMM:TIGR00200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HYE13165.1"
                     /translation="MLTAEIIAVGSELLTPFRTDTNSLWLTDKLNGVGIEVKLKTVVG
                     DDDARLEETIRDALKRSTCVVVTGGLGPTEDDITRKIAARALGRRLALDDRVLEDIRA
                     KFMHWGRKMPEINARQAMVVEGAEVLDNPNGTAPGMYIEHEGRVVILLPGPPREMKPM
                     FETHALHKLSEKAGGVSVARRVLRVAGMGESAVDERIAPIYTQYKNPQTTILFNQSEI
                     EVHLTAQARTEAEAELLLDGLAGQIEERLGDAVFAFRGEMMEEVVGLRLAVSGFTIAV
                     AESCTGGLVAHRLTEVPGSSSYFMEGVVTYSNEAKTRLLGVPEELIAAHGAVSAEVAE
                     AMAEGVKARAGTDFGLSVTGIAGPSGGTPEKPVGLVFIALSDDAHTQHRRVMLPGDRH
                     LIRWRASQAALDLLRRRLI"
     gene            4821..5294
                     /locus_tag="VD968_01855"
     CDS             4821..5294
                     /locus_tag="VD968_01855"
                     /inference="COORDINATES: protein motif:HMM:NF025052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE13166.1"
                     /translation="MATLLLMCGLPGSGKTTLAKRLEVERGALRLTPDEWIVRLFGAD
                     LTPPALDWCRDPVEAVQWSVAERALQLGVSAILDFGFWSRLEREEFRARAAALGAGSE
                     VHFLDAPREVLLSRLSARNAERPHGTFRVTEAQLDLWLGVFEPPTAGELEPRPAG"
     gene            5379..5981
                     /gene="plsY"
                     /locus_tag="VD968_01860"
     CDS             5379..5981
                     /gene="plsY"
                     /locus_tag="VD968_01860"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HYE13167.1"
                     /translation="MLHALVLLAAYLSGSIPFGYLLVRARGGGDVRQTGSGGTGATNV
                     TRRAGKWAGLATLALDAAKGALAVVLARGLLGAGAGAEWWVAGAALAAVAGHVFPVWL
                     GFRGGKGVATGLGAFLGLVPLAVLCALPVFVLVVAATRYVSLGSITAAAVLPVCVWLL
                     AGRDAGPAFAAALAGGALIIFMHRANIGRLLRGEESKLKL"
     gene            5978..7012
                     /locus_tag="VD968_01865"
     CDS             5978..7012
                     /locus_tag="VD968_01865"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: protein motif:HMM:NF000942.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HYE13168.1"
                     /translation="MSGRQKSMRVAVMGAGGWGTALSLLAARAGGAVRLWSRNAAVVE
                     STNGKRENTAYLAGHRIPDSVTATCDAGEALEGAEVVILAAPSHATRELLGRVRGRTE
                     PGAVFVSATKGIEVETGKRISELVADVLGGDAGARFVCLSGPSFAQEVAAGRPTAVVA
                     AGSDPGLARLVQGALSVQNFRIYTNDDVTGVELGGASKNVMALAAGMVSGLGLGANSV
                     AALITRGLAEMTRLACAFGARPETMTGLAGLGDLVLTCTGGLSRNRRVGEELGRGRSL
                     GEVLAGMSEVAEGVRTARAVKLLADRSGVEMPITAEVNAVLYEGKGAREAVESLMSRP
                     LKGEFDGYES"
     gene            7016..7480
                     /gene="smpB"
                     /locus_tag="VD968_01870"
     CDS             7016..7480
                     /gene="smpB"
                     /locus_tag="VD968_01870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003564285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HYE13169.1"
                     /translation="MAEDVKVIVTNRAAFHEYHILATYEAGAVLTGTEVKSVRGGQIQ
                     LKESYVGVRDGEAWLFNAHIAHYSHGNRQNHDPVRTRKLLLNRREIDRLEEEATVKGM
                     TLVVTRVYLKKGRVKFEIGVARGKKLYDKRETEMRRTLDRETRAQLKERAKG"
     gene            7495..9021
                     /locus_tag="VD968_01875"
     CDS             7495..9021
                     /locus_tag="VD968_01875"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF002074.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HYE13170.1"
                     /translation="MEIQTSNRPAAEADVQAVAVAVFKDERADEGLLKDLDAATGGLV
                     RSVLESEELKGKEGETAYIHLAPSGGGLKAARLLLVGVGEREGYGLAQVSQFAGTAAR
                     LLRARNVKTVGLVPRAEGVAAGRAASSAVEGAVMALFEPDKYRTVDKEERTVDRLVVI
                     VEGADGAELKRGAERGRIVGESVNFTRDLANEPGAYMTPTIMAERAQEIANEFGLDID
                     VLDRARMEQEGMGALLSVAAGSDQPPKMMVLSYMPDGKSAVEDGEEYLALVGKGITFD
                     TGGISLKPGENMELMKYDMTGGATVLGVMRAVAQLKPPFPVLGIVPSTENMPSGKATK
                     PGDVVRAMSGKTIEVINTDAEGRLILADAVSYAKKLGATKIIDMATLTGAVSIALGDV
                     NTGVMGTDQELINEIIEAGREVGEKFWQLPLDKEYTKQIKSDIADIKNVGGRKAGTIT
                     AAAFIKEFADGVSWAHLDIAGTAWGDEAKPYRAKGPTGVAVRTLVNFIERAANSGAAK
                     "
     gene            9441..10250
                     /locus_tag="VD968_01880"
     CDS             9441..10250
                     /locus_tag="VD968_01880"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HYE13171.1"
                     /translation="MVDYYKVLGVKRTATAAEIKSAYRRLARQRHPDLNGGAEAAARE
                     FARISLAYRTLSDPHERAYYDSQLRRAASADFGGSVLRSNNPHAQRMRRAAVQARFDR
                     VVDRLIEAERRETFALQQAVFTTVTLFLSTFFVAMFKPRLWDGFQIVGRAIVFTLFVI
                     GLWHLAVRLKACFEHYTYKPKSIHDSIINAEGAKPDKPFTRFAASTFLVLGYAASLAA
                     GLFVGSQAQYITLFNDLPYLFGQHVRFDLFFYPPIAVLIVDTMHTVASKID"
     gene            10606..10872
                     /locus_tag="VD968_01885"
     CDS             10606..10872
                     /locus_tag="VD968_01885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13172.1"
                     /translation="MAKRITERQRLALKLEDLSDSEVNEVLDYISIMETMRRAVAMPG
                     VWEDDLVAALAESPENARARQAFEWEAVRRRAERRAALSYAARA"
     gene            10869..11750
                     /locus_tag="VD968_01890"
     CDS             10869..11750
                     /locus_tag="VD968_01890"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HYE13173.1"
                     /translation="MSGKTRPQQGSRQARAPRPRHTRGAAAVFLLILTTTALAASPRQ
                     STLTPQQHAIEVERARLSSADVEERRDAVMRLGAMGRPEASRAAAAALADASPVVRAT
                     AARAILSLGPGETSTLILPLLRDRDEFVRREAAYALGFTRSHVGVAELIRLLEADKQA
                     SVRAAAAVALGQIGDPSAATALAGALARRLPARGLLARITRRRVEEDEFVRRASAVSL
                     GQLRSREAVPVLITTLSDERAPADVRREAARALGLIGDPSAEAALRAAVISNDPHLAT
                     TAFEALRKLGRAPGGPT"
     gene            complement(11824..13020)
                     /locus_tag="VD968_01895"
     CDS             complement(11824..13020)
                     /locus_tag="VD968_01895"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYE13174.1"
                     /translation="MEKETTTTNTVLLDPDQKSPRAQEFEEKLGARIVGQERAVRRMS
                     GLYQIFLAGMNPPNRPVGTMLFLGPTGSGKTRVVEAAAEVLFGDQNAVIKIDCAEFQH
                     SHEIAKLIGSPPGYLGHRETSPMLTQENLDRFHTEDTRLSLVLFDEIEKASDSLWQLL
                     LGILDKATLTLGDNRRVDFSKTMVVMTSNLGAREMSELITGGIGFAPAKGEKNPNDTE
                     VDQKIYRTAVEAARRKFSPEFMNRIDKVVVFRSLKEHHLKQILELELQAVQDRIMKGA
                     GTKFVFHCSDAAKDFLLDEGIDFKYGARHLKRAIERFLVYPLSNLVATEQVGLGDLVH
                     VDMNEGGTKLTFSKRSGGALITDVADYDDDEQDKPAAKSGGAALPLPAAKVARRGQGR
                     GEKSEA"
     gene            complement(13542..14864)
                     /locus_tag="VD968_01900"
     CDS             complement(13542..14864)
                     /locus_tag="VD968_01900"
                     /inference="COORDINATES: protein motif:HMM:NF019606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HYE13175.1"
                     /translation="MSTENKGVEIAPAKGKLGVLLVGLGAVSTTFIAGVEAVKKGLAE
                     PVGSLTQMGSIRLGKRTDNRSPLIKDFVPLAGLDDIVFGAWDIFPDSAYEAALTAGVL
                     EKELLAQLKAPLQKIKPMKAVFDQQYVKRLNGTNVKEGKTKFELAEQLVEEIAEFKRR
                     NRCSRLVMVWAASTEIFLRPHAVHKTLKSFEQAMRDNHKAIAPSMIYAYAALKSGVPF
                     ANGAPNLTVDIPAMLELATEMNVPVCGKDFKTGQTLMKTILAPGLKSRMLGLHGWYST
                     NILGNRDGEVLDDPESFKTKEESKLSVLEYILQPEVYPQLYKDFSHVVRINYYPPRGD
                     NKEGWDNIDIFGWLGYPMQIKIDFLCRDSILAAPIVLDLALFLDLAQRAGMRGIQEWL
                     SFYFKSPMTAPGLYPEHDIFIQLMKLKNTLRHLRGEDLITHLGLEYYD"
     gene            15640..17916
                     /locus_tag="VD968_01905"
     CDS             15640..17916
                     /locus_tag="VD968_01905"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HYE13176.1"
                     /translation="MENKQPTQAMRWIIATQGIFPSDGGGNGSGFADETPYISEVRLL
                     SYDTALPQGWLECNGALLQVIPNAALFSLIGYTYGGGGSTFALPDLRGRVPVGIGQGA
                     GMSDVLRGQKFGAETNTLTTASLPAHTHSVNSGATGSTGSGLALVNAQPSLGLRMGVV
                     SNSFDISNVGTVRFFAGSIYPTGFVACDGRSLSTFSFLALHAKLGYTFGGSGNNFNAP
                     DLRGRTPIGKGQGDGLTNRTLGQQVGSENITFSVSDMPQHTHSHPGGATGPAGGAGQS
                     HSTMQPSLVLRPALSLTGSYNSFESFGTPTPAVGEVRFFAYNGELPTTNLWVECDGSV
                     HPTSDFDDNYNFEVYSSLVGGTYGGDGFESVGLPDLRGRATAGIGSGPGLTARTLAQK
                     FGLETVPALGINNLPAHTHELTTDMEITKKDSTDPVPVGSSFTYTLRIYNRGPSIAHN
                     VTVTDAVPAGLTVTGVSLHGTSDFTGTGCAPAGNSVTCNLGTMRVFDNTFDGAVKKGK
                     VIVNITATASLPGQYTNVAGVDADEADTNASDNIASQTTTVLGVASVEVTPDAVPGGS
                     NCQKALVKVTLTGVAPYDTFVSLSDDLTATTNIPALPSPLSLRIPQGQLMATLPIDTS
                     QLTATQAGQVTASFGDSSASAPLTVKPIGVRHITVSPGLVEGGLQQATATVTLDCAPS
                     SPVSVVLKSSKLFAAKFIDPTTSTAAQPVTALMTTKQANFTIETYSVGSNVGVNISAE
                     GEDNVQKNSRLDVLAPTP"
     gene            complement(18025..18100)
                     /locus_tag="VD968_01910"
     tRNA            complement(18025..18100)
                     /locus_tag="VD968_01910"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18064..18066),aa:Glu,seq:ttc)
     gene            complement(18186..18917)
                     /locus_tag="VD968_01915"
     CDS             complement(18186..18917)
                     /locus_tag="VD968_01915"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE13177.1"
                     /translation="MKPFKRLPVARGLLALALAATTLAGCSAVAWQKPAPAATPAPTP
                     APPADDSVERATSEPYTGDLSIFEDPGRAERLQVERVMDVLGIVEGSGVADIGAGSGW
                     FTVRAARRAGPRGTVYAVEINPDYVKHIERRAEEEKLSNVRAVLGKEDDPLLPERSVD
                     AVLILKTYHEIAQPVVLLKRLRAALRDGARVGVIDREGSGDDHGVSAEVVIKEAERAG
                     FALAERHDFVKGDRMDYFLVFRARR"
     gene            complement(18984..19226)
                     /locus_tag="VD968_01920"
     CDS             complement(18984..19226)
                     /locus_tag="VD968_01920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13178.1"
                     /translation="MLTSGDKSNRLYVGDDVEIGPSVSRELASLLFDPQTAGGLLVSI
                     EPGRAAEFVSRLRESYPAASVIGRVRERGPRLLVVE"
BASE COUNT         3196 a         6599 c         6483 g         3125 t
ORIGIN      
        1 cgctccccga gggcgctttg gagatgcttt cgagcgagtt cgacgcggtt ctggccgggg
       61 cgttcggcga cccgcgagtg ccttccaact gtcacgcaga agacatcctc ctcgggatgc
      121 ggcgcggctt ggacctttac ataaacctcc ggcccgtccg gctcttgcac ccgcgcctga
      181 cccccttgcg cgaccgcggc gtcgaagaga tcaacttcgt cgtcttccga gagaacaccg
      241 agggcgccta cagcggcgca ggcggctttc tgaagaaggg gacgccggac gagatagcta
      301 cgcaggagga gttgaacacg cgcaagggcg tcgagcgcat cgtcgtcgcg gcttttgagt
      361 atgcgcgctc gaagggcaaa aggcgcgtga cgatggccga caagtcgaac gtgcagcgct
      421 tcggcggcga cctctggcag cgcgccttcc gcgaagtcgc ggcgcgctac ccggaggtgg
      481 aggccaacca ccagtacgtt gacgcgacgg cgatgttcat ggtgctcgac cccgctcagt
      541 acggggttat cgttacgagc aacctgttcg gcgacatact cacagacctc ggcgcggcct
      601 tgcagggggg gctggggctc gccgcctcgg gcaacatcca ccccggccgc gtctcgctct
      661 tcgagcccgt gcacgggagc gcccctccgc tcgcggggaa atccgtcgcc aacccggcag
      721 gagctattct gagcgcggcc ttgatgctag aatacctcgg tcacgacgaa gcggcggcgg
      781 cagttgacgg cgccgtgcgc gagagcatcg ccgccggcga gacgacgcgc gacctcggcg
      841 gcgcgctctc caccgggcag gcgggcgcgg cggtgcggga aagaatcagg agggagtgat
      901 gagtgcagaa tgcagggcgc ggaattaaag aaggtgcttt aattccgcgc cctgcattct
      961 gcactccgca cctgtcttta tgactaaggg gcaagagacg gcgcagcgtc tgatcgcgat
     1021 actggtcatc atggcgatgc tggccgtgat gggcataccg ccgaccgtca tcgtcttctt
     1081 cgccgtcgtg gtctatttcg tctggcgcgc cgtccagcgc tcggagcagc aggacatcaa
     1141 gaacgtcttc gacttctacg tctccgccgc cgaaatcctg cgcgacgacg agaagcgctg
     1201 gtacggcttc gaaatccaga gcgtcatagc cgagggcgag cgcatctgcc gcctcatgcc
     1261 cgacgcgccg ccgctcgtcc acttcgccct cggcgccctg caccaccgcg cgggcgacta
     1321 cgaggcggcg gccgagagcc tcgccttcgt gctcgaggac gagcgcggcg acgagaacca
     1381 tcggctctcg ccctcggcag agttgcgccg ctacgtcgag gtgctgcgcc gcatcgagcg
     1441 cgagccgacc gaggcgcccg tcacgatggc cgcagtccga agcctggagc gcgcgcgccg
     1501 ctcgcgcgcg gccgctatgc tcgaagagag ccgcgccagg ctcgccggag cggcggccgc
     1561 cgcgcgcccc gagcgcccgg ccatcgaaca gcacccgcac gccgcgaagg aggattcggg
     1621 cctccacgcc ctgcccccga aggcccgccc gcccgtcgtc cccaccccgc aggcgccccc
     1681 gcccatcacc gacgtgctcc gcgacctcta cgaggaagag aagaagaccg cctgaagtgc
     1741 gccgctgcgg cagtcgcctc gcttttctgc tataacaaaa cgcagtcatg caggttgagc
     1801 cggggaagag agtcggcagc tacgtcatag aggagccggt aggtcgcggc gggatgggcg
     1861 tggtctatcg agggcgccac gcgacgctgc cgcgcgccgt agccattaag tcaataagcc
     1921 cgcgcggcgc gcacgacctc cgaaggatgc gcagccgctt cgagcgcgag gcgttcgtgc
     1981 aggcgcagct cgaccacccc ggagtcgtta aggtttacga ctacgtcgtc tccgagcaga
     2041 cctacttcat cgtcatggag tacgtcgagg ggcgctcgct cgcgcagctc atacgccagg
     2101 agggcgggcc gctcgaaata aaccgcgcgc tcgacctctt cgagcaaata ctctcggcca
     2161 ttgcctacgc gcacaccttc acctaccgcg acgagcacgg cgccacacac cacggcatag
     2221 tccaccgaga cctcaagccc ccgaacataa tggtcacccc cgacgaccgc gttaaggtca
     2281 cggacttcgg catcgtcaag ctggtgggcg cagcggcgac cgacacgtcg aacgtggcct
     2341 acggctcgcc gcgctacgtc tcgcccgagc aggcaggcgg cgagcccgtc ggccagcgct
     2401 ccgacatcta ctcgctcggc acgattctct acgagatgct cacgggcgag ccccccttcg
     2461 gcgggccttc gggctcgaag gatatgacgc gcacggagat acttcgcgcg caccgcgagc
     2521 agcagccgcg cccgccgtcg gagctgaaca ccgaggtgac gcccgagata gagcgcgtcg
     2581 tgctgcgcgc gctcgaaaag aagccggagc ggcgcttcgc gtctgccgct gacttcctcc
     2641 gcgctctccg acgcgccagc gggcgcgacc cgtccgtggc cgactcggcc ggcgcgtcag
     2701 gccacacgtc actcaagggc ggcgcaggca caggcgcgct cggcgagact acggacgaga
     2761 ttcttcagga cgcataccac acgcagccca tctccgcggg ctcctgcccg gagtgcggcg
     2821 cggccgccgg ggccggcgac tccgtgtgcg cgacgtgcgg ccacgacctg acggcctcgc
     2881 ccgcgacggc cgacctggcc cgccgcgacg cgacggcacg gcaggcgagg cagggcgtaa
     2941 aactcttcgc ggccgtcggc gcgctctcgc tccttctaat ctcgctggtc tatttcgtgc
     3001 gcctgcgcgg cctcgactcg gcgcgcgagc cgaagggcgc cgccgttgtc gtcgcgaccc
     3061 ccgccccgac caccgccgcg gctcccggcc gtgacgaagg cgttccggcc ggccccctcg
     3121 cgctgctcgg agccgcggtc aaggttgact cgaccttcga cagctacaac acgcggccgc
     3181 tcacggacgg cgtgacggac gtgcgcgaga tcgcctcgat gcgcttcaac cagggcaact
     3241 gggtctcggc cgagagcccc gacgcgcact ggatagagct cgacttcggc gggcgcgcgc
     3301 gcgtcacggc cgtctatctc ttctggggct tcgaccgggg ccgctacatg ccctcacgcc
     3361 gcgtcgagct gcaagtgccg gacggcggcg cgggcggctg gcgcgcagtc tccgccctcg
     3421 accccggctc caattacgac cgcgccgcct tcgagttcga gcccgtcacg acggcacggc
     3481 tgcgcgtctt ccagccgccg cagcaggggc cttccaaccg ccccttcgtc atgtgggttc
     3541 gcgaggtgca ggcgttcggg acgaaagaga gcaggcagta gaaagatgct aaccgccgag
     3601 ataatcgccg tcggctccga gctgctgacg cccttcagga ctgacaccaa cagcctctgg
     3661 ctgacggaca agctcaacgg cgtcggcatc gaggtcaagc taaagaccgt cgtgggcgac
     3721 gacgacgcgc gcctcgaaga gaccatacgc gacgcgctca agcgctccac ctgcgtcgtc
     3781 gtcacagggg gcctcggccc cacggaggac gacatcacgc gcaagatagc cgcccgcgcc
     3841 ctcggccgcc gcctcgccct agacgaccgc gtgctcgaag acatacgggc caagttcatg
     3901 cactggggcc gcaagatgcc ggagataaac gcgcggcagg cgatggtcgt agagggcgcc
     3961 gaagtcctcg acaacccgaa cggcaccgcg cccggcatgt acatcgagca cgagggccgg
     4021 gtcgtcatcc ttctgcccgg cccgccgcgc gagatgaagc cgatgttcga gacccacgcg
     4081 ctccacaagc tctccgagaa ggcaggcgga gtcagcgtcg cgcgccgcgt cctgcgcgtc
     4141 gccgggatgg gcgagtcggc cgtggacgag cgcatcgcgc ccatctatac gcagtacaag
     4201 aacccgcaga ccaccatcct cttcaaccag tccgagatag aagtccacct cacggcgcag
     4261 gcgcgcaccg aggccgaggc cgagctactt ctcgacgggc tcgccggcca gatagaagag
     4321 cggctcggcg acgccgtctt cgccttccgc ggcgagatga tggaggaggt cgtcggcctg
     4381 cgactggccg tcagcggctt caccatcgcc gtcgccgaga gctgcacggg cggcctcgtc
     4441 gcgcacaggc tgacggaagt ccccggctcg tcgtcatact tcatggaggg cgtcgtcacc
     4501 tactcgaacg aggcgaagac gcggctgctc ggagtcccgg aggagttgat agcggcgcac
     4561 ggggccgtca gcgccgaggt ggccgaagcg atggccgagg gcgtcaaggc gcgcgccggg
     4621 acggacttcg gcctctccgt cacgggcatc gccggccctt cgggcggcac gcccgagaag
     4681 cccgtcggcc tcgttttcat agcactctcc gacgacgcgc acacccagca ccgccgcgtg
     4741 atgctgcccg gcgaccgcca cctcatacgc tggcgcgcct cgcaggccgc cctagacctc
     4801 ctgcgcaggc gtttaatttg atggcgacgc tcctgttgat gtgcggcctg ccgggctcgg
     4861 gcaagacgac gctggcgaag cggctcgaag tcgagcgcgg cgccctccgg ctcacgcccg
     4921 acgagtggat cgtgaggctg ttcggtgcgg atttgacgcc gcccgcgctc gactggtgcc
     4981 gcgaccccgt cgaggccgtg cagtggtctg tggcggagcg cgcgcttcaa ttaggcgtca
     5041 gcgccatact cgacttcggc ttctggtctc gcttggagcg cgaagagttc agagcccgag
     5101 ccgccgcgct cggcgccggc tcggaagtcc acttcctcga cgcgccgcgc gaggtgcttc
     5161 tgtcccgcct gagcgcgcgg aacgccgaac ggcctcacgg cactttccgc gttaccgaag
     5221 cgcagctcga cctatggctg ggcgtgttcg agccgccgac cgccggcgag cttgagccgc
     5281 gccccgccgg ttagcggcgg cgccgttcct tgtcgtcgcg ctcggccgct tgctatagtc
     5341 gctcgccgtt ctaccatacc gcccgcgggg cctgttcatt gcttcacgcg ctcgtactgc
     5401 tagcggcgta cctttcgggc tcgatacctt tcgggtatct cctggtgcgc gcgcggggcg
     5461 gcggcgacgt tcggcagacc ggctcaggcg ggacgggcgc gacgaacgtg acgcgaaggg
     5521 cggggaaatg ggcgggcctt gcgacgctcg cgctcgatgc ggcgaagggc gcgctcgccg
     5581 tcgtgctcgc gcgcgggctg ctcggggcgg gggccggcgc cgagtggtgg gtggccgggg
     5641 cggcgctcgc cgcggtcgcg ggccacgtct tccccgtgtg gctgggcttc cgtggcggca
     5701 agggcgtagc caccggcctg ggggcgtttc tgggccttgt gccgctggcc gttctgtgcg
     5761 cgctgcccgt cttcgtgctc gtcgtcgcgg cgacgcgcta cgtctcgctc ggctcgatta
     5821 cggccgcggc ggtgctcccc gtctgcgtct ggttgctcgc ggggcgcgac gccggcccgg
     5881 ccttcgcggc cgcgctcgcg ggaggcgcgc tcattatttt catgcatcgc gccaacatcg
     5941 gccgcctcct gcgcggcgaa gagagcaagc tgaagctgtg agcgggcggc agaaatccat
     6001 gcgggtcgcg gtgatgggcg cgggcggctg ggggactgcg ctgagccttc tggcggcgcg
     6061 ggccgggggc gcggtgcggc tctggtcgcg caacgccgca gtcgtcgaga gcactaacgg
     6121 caagcgggag aacacggcgt atctcgcggg ccacaggata cccgattccg tcacggcgac
     6181 gtgcgacgcg ggcgaggcgc tcgaaggcgc agaggtggtg attctcgccg ccccctcgca
     6241 cgcgacgcgc gagcttctcg ggcgagttcg cggccgaacg gagccgggcg ccgtcttcgt
     6301 cagcgcgacg aagggcatcg aagtcgagac tgggaagcgc atctcggagc ttgtcgccga
     6361 cgtgctgggc ggcgacgcgg gcgcgcgctt cgtctgcctg tcggggcctt cattcgcgca
     6421 ggaggtcgcg gccggcaggc cgacggcggt cgtggccgcc ggctccgacc ccggcctggc
     6481 gcgtcttgtg cagggcgcgc tgagcgtgca gaatttccga atctacacga acgacgacgt
     6541 gaccggagtg gagctcggcg gcgcctcgaa gaacgtcatg gcgctcgccg cgggtatggt
     6601 ctcggggctg gggctcgggg cgaacagtgt ggcggcgctc ataacgcgcg gcctcgccga
     6661 gatgacgcgg ctcgcctgcg ccttcggtgc gagacccgag acgatgacgg gcctcgcagg
     6721 tcttggcgat ctggtgctca catgcacggg cggcctgtcg cgcaaccgcc gcgtcggcga
     6781 agagctcggc cgcgggcgct ctctcggcga agtgctcgca ggcatgagcg aggtggccga
     6841 gggagtgcgg acggcgcgcg cggtaaaact cttggccgac cgcagcggcg tcgagatgcc
     6901 catcacggcg gaggtcaacg ccgtgctcta cgaaggcaag ggcgcgcgcg aggcggtcga
     6961 gagcctcatg tcccgcccgc tcaagggcga gttcgatggc tacgagtctt gaaagatggc
     7021 tgaagacgtt aaggtgatag tgacgaaccg cgcggccttc cacgagtacc acatactcgc
     7081 cacctacgag gccggggcgg tgctgacggg gacggaggtc aagagcgtgc gcggcggcca
     7141 gattcagctc aaggagtcct acgtcggcgt gcgcgacggc gaggcgtggc tgtttaacgc
     7201 gcacatcgct cactattcgc acggcaaccg gcagaaccac gaccccgtgc gcacgcgaaa
     7261 actcctgctc aaccgccgcg agatagaccg cctcgaagag gaggcgaccg tcaaggggat
     7321 gacgctcgtc gtcacccgcg tttatctgaa gaagggccgc gtcaaatttg aaataggcgt
     7381 ggctcgtggt aaaaaattgt acgacaagcg cgagaccgaa atgcggcgca ccctcgaccg
     7441 ggagacgcgc gcacagttga aggagcgcgc caaaggatga ggggaattaa gactatggag
     7501 attcagacca gcaaccgccc cgcagccgag gccgacgttc aggccgtcgc agtcgccgtc
     7561 ttcaaggacg agagggccga cgaggggctg ctcaaagacc ttgatgctgc gacgggcggg
     7621 ctcgtccgct cggtactcga atccgaagag ctaaagggca aggagggcga gaccgcctac
     7681 attcacctcg cgccctcggg cggcggcctc aaggccgcgc ggctgctact cgtcggcgtc
     7741 ggcgagcgcg aggggtacgg gctcgcgcaa gtctcgcagt tcgcggggac ggccgcgcgg
     7801 ctcctgcgtg cgcggaacgt caagacagtc gggctagtgc cgcgcgccga aggcgtggcg
     7861 gccgggcggg cggcctcgtc ggcggtcgag ggcgccgtca tggctctgtt cgagccggac
     7921 aagtaccgca ccgttgacaa ggaggagagg actgttgacc gcctcgtcgt catcgtcgaa
     7981 ggcgccgacg gcgccgaatt gaagcgcggc gccgagcgcg gccgcatcgt cggcgagtcg
     8041 gtcaacttca cgcgcgacct cgccaacgag cccggcgctt acatgacgcc gaccataatg
     8101 gccgagcgcg cgcaggagat cgcaaacgag ttcggcctcg acattgacgt gctcgaccga
     8161 gcccggatgg agcaggaggg catgggcgcg ctcttgagcg tcgcagccgg ctccgaccag
     8221 ccgcccaaga tgatggtgct ctcctacatg cccgacggca aatcggcggt cgaggacggc
     8281 gaggagtacc tcgctctcgt cggcaagggc atcacgttcg acacgggcgg catctcgctc
     8341 aagccgggcg agaacatgga gttgatgaag tacgacatga cgggcggcgc gacagtcctc
     8401 ggcgtcatgc gcgccgtcgc gcagctcaag cctcccttcc ccgtgctcgg catcgtcccc
     8461 tctacggaga acatgccgtc gggcaaggcc acgaagcccg gcgacgttgt gcgcgccatg
     8521 tcgggcaaga ccatcgaggt cataaacacg gacgccgaag gcaggctcat tctcgccgac
     8581 gccgtctctt acgccaagaa gctcggcgcc accaagataa ttgacatggc gactctgacc
     8641 ggcgccgtct ccatcgccct cggcgacgtg aacacaggcg taatggggac ggatcaagag
     8701 ctcataaacg agataatcga ggcgggccgc gaggtcggcg agaagttctg gcagctcccg
     8761 ctcgacaagg agtacaccaa acagatcaag tccgacatag ccgacatcaa aaacgtcggc
     8821 gggcgcaagg ccggcaccat cacggccgcg gccttcatca aggagttcgc cgacggcgtc
     8881 tcctgggcgc acctcgacat cgccggcacc gcctggggcg acgaggccaa gccgtaccgc
     8941 gccaaaggcc cgacgggcgt cgccgtccgc acgctcgtca acttcatcga gcgcgcggcc
     9001 aactccggcg ccgcgaagta gtcgagctcc ttcagcgaaa gcttcggggg ccggggcctc
     9061 ccgctcggga ggccccggcc cccgcttttg tgaacccttc gggcggcccg gcgtctaaaa
     9121 tattgtcggc aaatcataaa aaagtcgttg caaatatcgc ggcgttcgtg ttggaatgtg
     9181 cggcaagagg cgaagggagc ggttgacaaa agtctgtcct cgcccccctc ggcggccgcc
     9241 cggggtgacg cgccgcccct tcgcccgaaa ccgctagccg gccggcacgc atcaaaggga
     9301 ttccgggcgc gacgagaccg ccggttttct ggtatattac cgccgtcggg ccgtcctctc
     9361 cgcccgcgaa cgtttgccgg ggcgcgctgc cgctgtagcc ccgcgcccgc ggaagtctcc
     9421 cgaagtttgg tcgaggcacg gtggttgact actacaaagt tctgggggta aagcgcacgg
     9481 cgacggcggc cgagataaag tcggcctacc ggcgcctggc gcgccagcgc caccccgact
     9541 taaacggcgg cgcggaggcg gccgcgcgcg agttcgcgcg aatctctctg gcctaccgca
     9601 cgctcagcga cccgcacgag cgcgcctact acgactccca actcaggcgc gcggcctcgg
     9661 ccgacttcgg cggctcagtc cttcgctcta acaacccgca cgctcagcgc atgcggcggg
     9721 cggccgtgca ggcacgcttc gaccgcgtcg ttgaccggct catagaggcc gagcgccgcg
     9781 agaccttcgc gctacagcag gccgtcttca cgacggtcac gctgttcctc tcgaccttct
     9841 tcgtggcgat gttcaagccg cgactctggg acggcttcca aatcgtcggc cgcgccatcg
     9901 tcttcacgct cttcgtcata gggctgtggc atctggccgt ccgcctcaag gcctgcttcg
     9961 agcactacac ctacaagccg aagtccatac acgactcgat catcaacgcc gagggcgcga
    10021 agcccgacaa gcccttcacg cgcttcgccg cctcgacctt ccttgtgctc ggctacgcgg
    10081 cgagcctcgc ggccggcctc ttcgtaggct cgcaggcgca gtacatcaca ttattcaacg
    10141 acctgcctta cctcttcggc cagcacgtcc gcttcgacct cttcttctac ccgcccatcg
    10201 ccgtcctcat cgtggacacg atgcacaccg tcgcctccaa gatagactga ccccgcaggc
    10261 ccccgccgcc taagccttgc gcacgcgggg ggcctcgtgt atatttcgcc gctagaagac
    10321 gcccctgaag ggcgcccgca actaacagcc gaatacattg aatgacgccg cggcggcagg
    10381 tagcacggag cccggccccg tgcttcgact ctcgctcgga agggtaaagt ttaagagttt
    10441 gctaatcccg gagactcgaa cgaaacaggt gaaggccaca caagagcgcg cgcgccccgc
    10501 gccgcgacac gacgccggcg gcagaccggc cgacgcacgt tcagccccgc caccacgtgc
    10561 ctgagcgagc tttgccgtcc ggcttcgcaa gggaggagcc gtccgatggc aaagcggata
    10621 acggaacgcc agcgcctagc cctcaaactc gaagacctct ccgactcgga ggtcaacgaa
    10681 gttctcgact acatctcgat aatggagacg atgcggcgcg ccgtggcgat gcccggcgtc
    10741 tgggaggacg acctcgtagc ggccctggcg gaatcgcccg agaacgcgcg cgcccgccaa
    10801 gccttcgagt gggaagcggt gcggcgccgc gccgagcgcc gcgcggcgct cagctacgcc
    10861 gcccgcgcat gagcggaaag accaggccgc agcaaggttc ccgtcaagcg cgcgccccgc
    10921 gcccgcgaca cacgcgcggc gcggccgccg ttttcttact tatcctcacg accacggcgc
    10981 tcgccgcctc tccccgtcag tccacgctca cgccccagca gcatgcgata gaagtcgagc
    11041 gggcgaggct ctcgtccgcg gacgtcgagg agcggcgcga tgcagtcatg cgcctcggcg
    11101 cgatggggcg gcccgaagcc tcccgcgcgg ccgccgcggc gctcgcggac gcgtcgccgg
    11161 tggtgcgtgc gacggccgcg cgcgcaatcc tctcgctcgg gccgggcgag acttcgaccc
    11221 tgatactgcc gctgctcaga gaccgcgacg agttcgtgcg ccgcgaggcc gcatacgctc
    11281 tgggcttcac tcgcagccac gtaggcgtgg cggagttgat acgcctgctt gaagcggaca
    11341 agcaggcttc cgtgcgggcg gcggcggccg tggcgctcgg gcagataggc gacccctcgg
    11401 cggcgacggc gctagccggg gcgctcgcgc ggaggctccc ggcccgcggc cttctggcgc
    11461 gcatcacgcg gcgtagagtg gaggaggacg agttcgtgcg ccgcgcctcg gccgtctcgc
    11521 tcggccagct caggagccgc gaggcggttc ccgttctcat cactacgctc tcggacgagc
    11581 gcgcgcccgc cgacgtgcgc cgcgaggccg cccgcgccct cgggctgata ggcgacccct
    11641 cagccgaggc ggcccttcga gcggccgtca tctcgaacga cccgcacctc gcgaccacgg
    11701 ccttcgaggc cctgcgcaaa ctcggccgcg cgcccggcgg cccgacctaa actctcgccc
    11761 gaataaaaaa tggccgggga ggcgacgacc tccccggcca ttttttatgc tcacccagtc
    11821 cgtctaggct tcggacttct cgccccggcc ctgcccgcgg cgcgcgacct tcgcggccgg
    11881 aagcggtagc gccgcgccgc cggacttcgc ggcgggcttg tcctgctcgt cgtcgtcgta
    11941 gtcggccacg tccgtgatga gcgcgccgcc cgagcgcttc gagaaggtaa gcttggtgcc
    12001 gccctcgttc atgtcaacgt ggacgaggtc gcctaagcca acctgctcgg tcgccaccag
    12061 gttcgacagc ggatagacga ggaagcgctc gattgcccgc ttcaggtggc gcgcgccgta
    12121 cttgaagtca atgccctcgt cgagcaggaa gtccttcgcc gcgtccgagc agtggaagac
    12181 gaacttcgtg ccggcgccct tcatgatgcg atcctgcacg gcctggagct cgagctcaag
    12241 aatctgcttg aggtggtgct ccttcaagct gcggaagacc actaccttgt caatgcggtt
    12301 cataaactcc ggcgagaact tgcgccgggc cgcctcgacc gccgtgcggt aaatcttctg
    12361 gtcaacctcg gtgtcgttcg ggttcttctc gcccttcgcc ggggcgaagc cgatgccgcc
    12421 ggtgatcagt tccgacatct cgcgcgcgcc caagttcgag gtcatgacga ccatcgtctt
    12481 cgagaagtcg acgcggcggt tgtcgcccaa ggtgagcgtc gccttgtcga gtatgccgag
    12541 caggagctgc cacagagagt cggaagcctt ctctatctcg tcgaatagga cgagagagag
    12601 ccgcgtgtct tcggtgtgga agcggtcgag gttctcctgc gtgagcatgg gcgaggtctc
    12661 gcggtggccg aggtagcccg gcgggctgcc gatgagcttc gctatctcgt gcgagtgctg
    12721 gaactcggcg cagtcaatct ttatgaccgc gttctggtcg ccgaacagca cctcggccgc
    12781 cgcctcgacg acgcgagtct tgccggagcc cgtcgggccc aggaagagca tcgtgccgac
    12841 ggggcggttc ggcgggttca tcccggcgag gaagatttgg tagaggccgc tcatgcggcg
    12901 caccgctcgc tcctggccta cgatgcgcgc gccgagcttc tcctcgaact cctgcgcgcg
    12961 ggggcttttc tggtcggggt caagaagaac cgtgttggtt gtcgtcgtct ctttttccat
    13021 cgctgcaacc atgattctga ctccttcgcc tggagcgacg ccggcgcgcg tcgtcggctt
    13081 gcggcgggcc gccacatttg gcgaccgccg gccgcgaggg ccgcgtcggc actactgctc
    13141 catgcaaaga gcgaaccgct gtcctctttg atgagtcgtt ttcagacgtg gtttgcttac
    13201 agcgctggcc gggggggacg gcgccgggta acgtgagcac tatatatacg actgagcgcc
    13261 ttttgtcacc ctaaatattc gggccgcgaa agtttttacg agcggcgcgc cgcgctgtaa
    13321 aaaattccgg cgtgacactt tccggcagcg cggggctgac aaataacgtc gggctccaac
    13381 tttagtatgc cggccggcgg cgccgggcca cacctaaatg tgaaaccgcg ggcgcgggat
    13441 ggagcaaagc gtgcggggcg aggggcgcgg cgggcgggcg aaagaagaag gcgcggcggg
    13501 ttgcccggcc gcgcctcccc gctcgggttt ggttgcccgc ctcagtcgta atattcaagg
    13561 ccgaggtggg tgatcaggtc ttcgccgcgc aggtggcgga gcgtgttctt gagcttcatg
    13621 agctgtatga agatgtcgtg ctcggggtag agccccggag ccgtcatcgg cgacttgaag
    13681 tagaaggaga gccactcctg tatgccgcgc atcccggcgc gctgcgcgag gtcgaggaag
    13741 agcgcgaggt cgaggacgat gggcgcggcg aggattgagt cgcggcagag gaagtcaatc
    13801 tttatctgca tcgggtagcc gagccacccg aatatgtcta tgttgtccca cccctccttg
    13861 ttgtcgccgc gcggcgggta gtagttgatg cggacgacgt gcgagaagtc cttgtagagc
    13921 tgcggataga cctcgggctg gagtatgtac tcgaggacgg agagcttcga ctcctccttc
    13981 gtcttgaacg actcggggtc gtcgaggact tcgccgtcgc ggttgccgag tatgttggtg
    14041 gagtaccagc cgtgcaggcc gagcatgcgc gacttcaggc ccggcgccag tatggtcttc
    14101 atcaacgtct ggccggtctt gaagtccttg ccgcagacgg ggacgttcat ctcggtcgca
    14161 agctccaaca tggccgggat gtcaacggtc aggttggggg cgccgttggc gaaggggacg
    14221 cccgacttga gcgcggcgta ggcgtagatc atagagggcg cgatggcctt gtggttgtcg
    14281 cgcatcgcct gctcgaagga cttcagcgtc ttgtggacgg cgtgcggcct gaggaagatt
    14341 tcggtcgagg ccgcccagac catcacgagg cgcgagcagc ggttgcgccg cttgaactcg
    14401 gcaatctcct cgacgagctg ctcggccagc tcgaacttcg tcttgccctc cttgacgttc
    14461 gtgccgttca ggcgcttgac gtactgctgg tcgaagacgg ccttcatcgg ctttatcttc
    14521 tggagcgggg ccttgagctg cgcgagcagc tccttctcca acacgccggc cgtgagcgcc
    14581 gcctcgtagg ccgagtcggg gaagatgtcc cacgcgccga agactatgtc gtcgagcccg
    14641 gcgagcggga cgaagtcctt gatgagcggc gagcggttgt cggtgcgctt gccgagccgg
    14701 atcgagccca tctgcgtgag gctcccgacg ggctcggcaa ggcccttctt gacggcctcg
    14761 acgcccgcga tgaaggtcgt gctcacggcc ccgaggccga cgagcagcac cccgagcttc
    14821 cctttggccg gcgctatctc tacgccctta ttctctgttg acaagtttgc tgttctcctt
    14881 tggaaatgtc ccgtcgagga tagcggaggc gagccccccg cgtcttgtca tatcttgcgc
    14941 aaaaagggcg ggggattgct ccgaagctcg gaggcggcgc aaggcccgtg cggcgggctc
    15001 gggcgcgggc ccgatgcggt cgcaggcggc gcggtactct attacagcca cccgtgccac
    15061 cgggcgcctt ccgtgcaata gactaccggc cgcttccgtg atactatccc gcccgtttca
    15121 aacgtgcgga gggcaccctt cgtcctcgtg ctgtcaggcg catcctgttc ccataccgct
    15181 ttcagcctcc gcccttacgc tccggatttc ccgaaacgct tcccgacacg gagccgcccg
    15241 gctcggccgc cgaaacgcct acggaggagt tttgccttgt tcgttgcccg ccctcttgtg
    15301 ccaaccgcgg cggcgcatgc ccgcgaacat tgtggatcgg ctagtagccc ccaactctga
    15361 aggagaaaac ctgtgacttc ccccacgcac ccgctacgct caacgttcct gcggctcacc
    15421 ctggtgctgg ccgccgtctg tgttgtcggt tcccccgtct ggcgcgtgag cgcgagcggc
    15481 ccttccgggc acgggcccgt ccgactgaag aatccgggtg cctcgcaact gcgtggcgtg
    15541 ctgcccgcag ggatggcggc cactggcgcg gcgccgtcgg ccgccatccc tgcggtgaca
    15601 gcgaccaccg gcagcaccgg ctctgccacg cccgcggcgg tggagaataa acagcccacc
    15661 caggccatgc gctggatcat cgccacccag ggcatcttcc cgtccgacgg cgggggcaac
    15721 gggagcgggt tcgctgatga aacgccctac atctcagagg tgcgcctgtt gtcatatgat
    15781 actgctctgc cccagggatg gctcgagtgc aacggggctt tacttcaggt cattccaaac
    15841 gccgcactat tctcgctgat aggctacact tatggcggcg gtggctcgac cttcgccctg
    15901 cccgatctgc gcgggcgtgt gccggtgggc atcggccagg gcgcgggcat gtccgacgtc
    15961 ctccgcggtc agaaattcgg cgcggagact aacactctga ccacggccag tctgcccgcg
    16021 cacacacaca gcgtcaacag cggggctacc ggctccaccg gctccgggct ggcgctggtc
    16081 aacgcgcagc cttcgctggg cctccgcatg ggggtcgtct ccaattcatt cgatatctcc
    16141 aacgtcggca cggtgcgatt ctttgccggc agcatttatc ctacaggctt cgtggcctgc
    16201 gacggccgct cgctctcgac gtttagcttc ctcgctcttc atgcaaagct gggctatacc
    16261 ttcggcggta gcggcaataa cttcaacgcg cccgacctgc gcgggcgcac cccgatcggc
    16321 aagggccagg gcgacggcct caccaaccgc accctcggcc agcaggtcgg ctcggaaaac
    16381 atcaccttct ctgtgagcga tatgccccag cacacgcact cccaccccgg cggcgcgacc
    16441 ggcccggcgg gtggcgcggg acagtcacat tccaccatgc agccctcgct cgtgctcaga
    16501 ccggcgctct cccttactgg gagctataat agttttgaga gtttcggaac gccgaccccg
    16561 gccgttggtg aagtgcgttt ctttgcttat aacggtgagc tgcccaccac taacctgtgg
    16621 gtggagtgcg acggctcggt gcatccgacg agtgatttcg acgacaacta caatttcgaa
    16681 gtctatagct ctttggtcgg cggtacctat gggggtgatg ggttcgaaag cgtgggtttg
    16741 cccgacctgc gagggcgcgc cactgccggc atcggcagcg ggccgggcct gaccgcgcgc
    16801 acgttggctc agaagttcgg gctggagact gtgcccgcgc tgggcattaa caacctgccc
    16861 gcgcacacac acgaattgac caccgacatg gagatcacca agaaggattc cacggacccc
    16921 gtgcccgtcg gctcttcctt cacctacacg ctcaggatat acaaccgcgg ccccagcatc
    16981 gcgcacaacg tcacggtcac cgacgccgtc cccgccggcc tcaccgtcac gggcgtctca
    17041 ctccacggga cgagcgactt caccggcacg ggctgcgccc ccgccggcaa ctcagtcacc
    17101 tgtaacctcg gcacgatgcg cgtcttcgac aacaccttcg acggggcggt caagaaaggc
    17161 aaggtcatcg tcaacatcac ggcgacggcc tcgctgccgg ggcagtacac gaacgtggcg
    17221 ggcgttgacg ccgacgaggc cgacaccaac gcgtcggaca acatagccag ccagacgacc
    17281 accgtcctgg gcgtcgcctc ggtcgaggtc acgcccgacg ccgtgccggg cggctcgaac
    17341 tgccagaagg ccctcgtcaa agtgactctg acgggcgtcg cgccctacga cacattcgtc
    17401 tcgctctcgg acgacctgac ggcgacgaca aacatcccgg ccttgccttc gccgctgtcc
    17461 ctacgcatcc cgcagggaca gttaatggcc accttgccca ttgacaccag ccagctgacg
    17521 gcaacgcagg cggggcaggt gacggcaagc ttcggcgact cgtcggcctc ggcgccgctc
    17581 actgtcaagc ccatcggcgt gcgccacatc acggtctcgc cggggctcgt cgaggggggg
    17641 ctacagcagg cgacggccac cgtcacgctc gactgcgccc cgtcgtcgcc cgtctcggtc
    17701 gtgctgaagt cgagcaagct gttcgcggcg aagttcatag acccgacgac tagcacggcg
    17761 gcgcagccgg tgacggcgct gatgaccacg aagcaggcca acttcacgat agagacctac
    17821 tcggtgggct ccaacgtcgg cgtcaatata agcgcggagg gggaggacaa cgtgcagaag
    17881 aactccaggc tagacgtgct cgcgcccacg ccttgatgcg ggggcgccat atgaggcgcg
    17941 gccgcggcgt gaaccgcccg cggcgaagat gtccgtaaac aagaacagcc accttgcggt
    18001 ggctgttctt gtttcacgga gatttggcgt cccgtacggg agtcgaaccc gtgtcgccgc
    18061 cgtgaaaggg cggtgtccta ggccactaga cgaacgggac gcgagcggtt ttctaccgga
    18121 aaacggcgac gtttaagtta acgtgcgccc cgcgggcgtg tcaaccgggc gaacccgtcc
    18181 ggcgctcacc tgcgcgcgcg gaagacgagg aagtagtcca tccggtcgcc tttgacgaag
    18241 tcgtgacgtt cggcgagcgc gaagccggcg cgctcggcct ccttaatcac gacttcggcc
    18301 gagacgccgt gatcgtcgcc cgagccctct cggtcaatga cgccgacgcg cgcgccgtcg
    18361 cgaagcgccg cacgaaggcg cttgagcagc accacgggct gcgcgatctc gtggtaggtc
    18421 ttgaggatga ggacggcgtc aacgctgcgc tcgggcagga gcgggtcgtc ttctttcccg
    18481 aggacggcgc ggacgttcga gagcttctcc tcttcggcgc ggcgctcgat gtgcttgacg
    18541 tagtcggggt ttatctcgac ggcatagacc gtccctcgcg gccccgcgcg ccgcgccgcg
    18601 cgaactgtga accagccgga gccggcgcct atgtcggcga cgccgctgcc ctcgacaatc
    18661 ccgagcacgt ccatcacgcg ctcgacctgc aacctctccg cgcggcccgg gtcttcgaaa
    18721 atcgagaggt cgcccgtgta gggctcgctc gtcgcgcgct ctacgctgtc gtcggcgggc
    18781 ggagccggcg tcggcgcggg agtcgccgcg ggcgccggct tctgccaggc gacggccgag
    18841 cagccggcca gtgtcgtggc ggcgagcgcg agcgccagca ggccgcgcgc taccgggagg
    18901 cgtttgaagg gcttcatggc ggcacggaat ttacaacagc cgcgtggcct cgggtgctgc
    18961 gattctgtaa aaggtttgta aagttattcg acgacaagga ggcgcgggcc gcgctcgcgc
    19021 acgcggccga tgacggaggc cgcggggtag ctctcgcgca ggcgcgagac gaactcggcg
    19081 gcgcggccgg gctcgattga gacgagcagg ccgccggccg tctgcgggtc gaagaggagg
    19141 ctcgcaagct cgcggctgac cgaagggcct atctcaacgt cgtcgcccac gtagaggcgg
    19201 ttcgacttat cgccgctcgt gagcatcccg gccgcggcca gctcaatcgc gccggggatg
    19261 agcgtcgccc cgcggcgtgc tggtggctcg aatcgtgcaa tcagcagggt gctgcacaga
    19321 ccccgaccag tctgcgaagg agtcgaccgt gaaaccccgc ctcctcccgg ccgctctcat
    19381 cttcgccctc gccgcgcacg ttt
//
LOCUS       DASPKR010000062         3643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1042381, whole genome shotgun sequence.
ACCESSION   DASPKR010000062 DASPKR010000000
VERSION     DASPKR010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3643)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3643
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1042381"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1158
                     /locus_tag="VD968_01925"
     CDS             <1..1158
                     /locus_tag="VD968_01925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13179.1"
                     /translation="IFLNPSDIGGRYSALSYFGMVPAALMGVDIRKLLDRAERVMHAC
                     SQVVPAAENPGARLGAILGECAKAGRDKLTIVADPKIESFGLWVEQLIAESTGKEGKG
                     IVPVAGEPLAAPSAYGDDRLFVSISVGRPDGETESKLKALEAAGHPVVYRTLTDAYDL
                     GEEFFLWEMATAFAGWRLGINPFDQPNVQESKDATRELLEAFKSEGSLREQTALVSEG
                     ELTLYADDETRAALPSGSLLESLRAHLSRAGAGDYIALLNYIEETPEHDALLQKIRTR
                     LRDATRCATTTGYGPRFLHSTGQLHKGGAANGVFLQITARDPRDLEIPGEPFTFSTLK
                     QAQALGDFRSLSARGRRAVRLDLGADSLAGLRRLHDLVAEALPVSGATGAM"
     gene            1256..2725
                     /gene="gndA"
                     /locus_tag="VD968_01930"
     CDS             1256..2725
                     /gene="gndA"
                     /locus_tag="VD968_01930"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: protein motif:HMM:NF006765.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004616 - phosphogluconate dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HYE13180.1"
                     /translation="MATPEQTPKTANIGMIGLAVMGENLARNIERNGYSVAVYNRPPS
                     GGEPDRVTKFMEENAGKQFIGTRSPEEFVKSLERPRKIILLVKAGDPVDWTVNQIKPF
                     LEPGDIIIDGGNSHFTDTERREKQLKAEGLNFIGSGVSGGEKGALLGPSLMPGGDRAA
                     YEQIRPIWEAIAAKVDDGPCVTYIGPGGAGHFVKMVHNGIEYGDMQLIAEAYDMMRRL
                     LGMSATEMADVFDEWNRGDLESFLIEITAKILRARDPETGGPLVDLVLDKAGQKGTGK
                     WTSQVALDLGVVIPTINAAVDTRTISGRKDERVEASRQIKGPQRAGHDGERAEMIAAI
                     RDALYASKICSYAQGMSLIQVASEHWGWGIDLGETARIWKGGCIIRARFLGKIKQAYE
                     RRADLPNLLLDPDFNDYIQRAQTNWRRAVTTAQLAGVPAPGMSASIGYFDSYRTAELP
                     LNLTQAQRDFFGSHTYERKDKPGAGFVHTEWEELLEKQG"
     gene            2739..>3643
                     /locus_tag="VD968_01935"
     CDS             2739..>3643
                     /locus_tag="VD968_01935"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HYE13181.1"
                     /translation="MTETVLENPLRAGMRLERTAEPCAVVIFGASGDLAKRKLLPALY
                     RLVQERLLPAEFAVVGMGRTPMTDEEFRARMRESVAEFSEAKQVDEEVWGSFARGLYY
                     LPSNIQNQEDYARLSELLGRVSRERGTGGNRLFYLSTAPEFYAEAIERLDAAGLTRGG
                     QGWARVIIEKPFGTSLDSARELNRQILRHLDERQIYRIDHYLGKETVQNLLVFRFANG
                     IFEPMWNRQYIDHVQITNAETVGVEGRGGYYEKSGVVRDMIQNHVFQVLSLVAMEPPA
                     TLSAEDVRDEKIKAMHSARAFTPERV"
BASE COUNT          679 a         1242 c         1170 g          552 t
ORIGIN      
        1 atcttcctca acccttcgga catcggcggg cgctactcgg cgctctccta cttcggcatg
       61 gtgcccgcgg cgctgatggg cgttgacatc cgtaagctgc tcgaccgcgc cgagcgcgtc
      121 atgcacgcct gctcgcaggt cgtgccggcc gcggagaacc ccggcgcgcg cctcggcgcc
      181 atactcggcg agtgcgcgaa ggcaggccgc gacaagctga ccatcgtcgc cgacccgaag
      241 atcgaatcct tcggcctctg ggtagagcag ttgatcgcgg agagcacggg caaggagggc
      301 aaaggcatcg tccccgtcgc gggcgagccg ctcgccgcgc cgtccgctta cggcgacgac
      361 cgccttttcg tctcaatctc cgtgggacgg cccgatggcg agaccgagtc gaagctcaag
      421 gcgctcgaag ccgccgggca ccccgtcgtc tatagaacgc tcacggacgc atacgacctc
      481 ggcgaagagt tcttcctctg ggagatggcg acggccttcg ccggctggcg gctcggcata
      541 aaccccttcg accagccgaa cgtgcaggag tcgaaggacg cgacgcgcga gcttctggaa
      601 gccttcaagt cggaagggag cctgcgcgag cagacggcgc tcgtctccga gggcgagctc
      661 acgctctacg cggacgacga gacgcgcgcg gcgctcccct cggggtcgct cctcgaatcg
      721 ctgcgggcgc acctctcgcg cgccggggcg ggcgactaca tcgcgctcct caactacatc
      781 gaagagacgc ccgagcacga cgcgctccta caaaagattc gcacgcggct gcgcgacgcc
      841 actcggtgcg cgactaccac cggctacggc ccgcgcttcc tgcactcgac ggggcagcta
      901 cacaagggcg gcgcggcgaa cggcgtcttc ctgcaaatca ccgcgcgcga ccctcgcgac
      961 cttgaaatcc ccggcgagcc cttcaccttc tcgacgctca agcaggcgca ggccctcggc
     1021 gacttccgct cgctctcggc caggggccgc cgcgccgtcc gcctagacct cggcgcagac
     1081 tccctcgccg gcctccgccg cctccacgac ctcgtcgccg aggccctgcc cgtttccggg
     1141 gcgacgggag caatgtagaa gctcagaagt cagagcgcgg aatgatgaat gaagacggct
     1201 cgtctgtagt tctacattct gcaccctgac ttctgcattg ttgaacagga gtgacatggc
     1261 tacccccgaa cagacaccga agaccgccaa tatcggaatg atagggctcg ccgtgatggg
     1321 cgagaacctg gcgcgcaaca tcgagcgcaa cggctactcc gtcgccgtct ataaccgccc
     1381 gccgagcggc ggcgagcccg accgcgtcac caaattcatg gaggagaacg ccggcaagca
     1441 gttcatcggc acgcgctcgc ccgaggagtt cgtaaagtct ctggagcgac cgcgaaagat
     1501 tatccttctg gtgaaggccg gcgaccccgt tgactggact gtcaaccaga taaagccctt
     1561 cctcgaaccg ggcgacatca tcattgacgg cggcaactcg cacttcacgg acacggagcg
     1621 ccgggagaag cagctcaagg ccgagggcct aaacttcatc ggctcgggcg tctcgggcgg
     1681 cgagaaggga gcgctcttag ggccttcgct gatgccaggc ggcgaccgcg ccgcctacga
     1741 gcagattcgc cccatctggg aggcaatcgc cgctaaggtg gacgacgggc cgtgcgtgac
     1801 ctacataggg ccgggcggcg cgggccactt cgtcaagatg gttcacaacg gcatcgagta
     1861 cggcgacatg cagctcatcg ccgaagccta cgacatgatg cggcgcctgc tcggcatgtc
     1921 tgccacggag atggccgacg tgttcgacga gtggaaccgc ggcgacctgg aaagcttcct
     1981 catcgagata acggcgaaga ttcttcgcgc ccgagacccc gagaccggcg gccctctcgt
     2041 tgacctagtg ctcgacaagg cgggccagaa ggggacgggc aagtggacga gccaagtcgc
     2101 cttagacctc ggcgtcgtca tcccgaccat caacgccgcc gttgacacgc gcacgatctc
     2161 cggccgcaag gacgagcgcg tcgaggcgag ccggcagata aaagggccgc aaagagccgg
     2221 ccacgacggc gagcgcgcgg agatgatcgc cgccatacgc gacgcgctct acgcctcgaa
     2281 gatttgctct tacgcgcagg ggatgagcct gattcaggtc gcctccgagc actggggctg
     2341 gggcattgac ctcggcgaga ccgcccgaat ctggaagggc ggctgcatca tacgcgcgcg
     2401 gttcctcggc aagataaagc aggcttacga acggcgagcg gatttgccga acctcctgct
     2461 cgaccccgac ttcaacgact acatccagcg cgcgcagacg aactggcgcc gcgccgtgac
     2521 gaccgcgcag ctcgcgggcg tgcccgcgcc ggggatgtcg gcgtcaatcg gctacttcga
     2581 ctcctaccgc acggcggagc ttccgcttaa cctcacgcag gcgcagcgcg acttcttcgg
     2641 ctcgcacacc tacgagcgca aggacaagcc cggcgccggc ttcgtccaca ccgagtggga
     2701 agagcttttg gaaaagcagg gctgaggcga ctcccaccat gactgaaaca gtcctcgaga
     2761 accctctgcg cgcggggatg cggcttgagc gcacggccga gccgtgcgcc gtcgtgatat
     2821 tcggtgcctc tggcgacctc gcgaagagga agctgctgcc ggcgctctac cgcctcgtgc
     2881 aggagaggct gctgcccgcc gagttcgcag tcgtcggcat gggccgcacg ccgatgacgg
     2941 acgaggagtt ccgcgcgagg atgagagagt ccgtcgcgga gttctccgaa gcgaagcagg
     3001 ttgacgagga ggtctggggc tccttcgcgc gcgggctcta ctacctcccg tcgaacatac
     3061 agaatcagga ggactacgcg cgcctctcgg agcttctcgg gcgcgtctcg cgggagcgcg
     3121 gcacgggcgg caaccgcctc ttttacctct ctaccgcgcc cgagttctac gccgaggcca
     3181 tcgagcgcct cgacgccgcg ggcctcacgc gcggcgggca gggctgggcg cgcgtcatca
     3241 tcgagaagcc gttcggcacg agcctcgaca gcgcccgcga gctgaaccgg cagattctcc
     3301 ggcacctcga tgagcggcag atttaccgta tagaccacta cctcggcaaa gagaccgtcc
     3361 agaaccttct ggtcttccgc ttcgccaacg gcatcttcga gccgatgtgg aaccggcagt
     3421 acatagacca cgtgcagatt acgaacgccg agacggtggg tgtcgagggg cgcggcggct
     3481 actacgagaa atcgggcgtc gtccgcgaca tgattcagaa ccacgtcttc caggtcctct
     3541 cgctcgtcgc catggagccg cccgccacgc tctcggccga ggacgtgcgc gacgagaaga
     3601 tcaaggccat gcactcggcc cgcgccttca cgccggagcg cgt
//
LOCUS       DASPKR010000063         3589 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1689600, whole genome shotgun sequence.
ACCESSION   DASPKR010000063 DASPKR010000000
VERSION     DASPKR010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3589)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3589
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1689600"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(226..>3589)
                     /locus_tag="VD968_01940"
     CDS             complement(226..>3589)
                     /locus_tag="VD968_01940"
                     /inference="COORDINATES: protein motif:HMM:NF013395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HYE13182.1"
                     /translation="STGLSVTANLTAIGGLASQSFADGGNNSFSFTATVAPGTTPGTK
                     SLPFTVSDAEGRTGSGTITLNVEQPAPVVEHIVISQVYGGGGNSGATYRNDYVELYNP
                     GTTSFDVTGWSLQYAAFDGSGWESNKAYLGGVIAPGEYYLVRLASGGATGAALQPANV
                     TGGINMSATNGKIALVKNLEGLSGADGQCPLEDPDLVDFVGYGTATCGEGGTKAPAGS
                     NTTALFRKSNGSTDTNNNANDFVSGTPNPRQTAPIVELGPAVITTDPRSGGSNAPRDA
                     SITVTFTEAVDLAPGWFDINCAVSGRHNDAAIYSGPVSYVITPDVNFSAGEQCTVTVY
                     AASVHDQDGDDSAANTDSLVSDHTWSFTISTGTAPPYPPSVHLTMGNPTGAVADTSKP
                     NNYLMEKPEFALSYNRDRGTPNWVSWHLSDDWTGSLSRVDTFRPDPAVPEDWYRVLHT
                     DYVGSGFDRGHMVPNADRDKETSIPINQATFLMTNMLPQAPDNNQGPWAVMEGYLRTL
                     NPANELYVVAGGVGTGGAGSAGAATTIAGGRVAVPSHTWKVALVLPKDGGDDLARVTC
                     GARTIAVIMPNVQGIRNNPWEGYLTTVDQVEALTGYDFFSNLPDAVENCVEAGTNGSN
                     PPGTAGQTVFTPEDTPAAINLDAVSPNNNPLTYVIVSGPAHGTLTGDGENVTYTPQGD
                     YHGDDSFTFKVNDGLRDSNISKVEISVTPVNDAPAASDDFKTTQEDTPLAFAAGDLTS
                     NDGAGAADESGQTLSVASVTATADTHGSVSLAAGQVTYTPDADYNGPASFTYKVCDDG
                     TTSGSPDSKCATGTVFVTVESVNDKPTLVNVPASATVNELAAYTFTAQAADVDGQALT
                     FSLVGAPDGAAIDGATGVFTWSPTEAQGGTGSPYDFKVRVSDGEAVAEATASITVNEV
                     NQAPVLSAIADQTVIVGGTLVFAASATDGDAPAQALTYSLVGAPAGASINSSTGVVTW
                     APTLAQAGQVHTFGVRVTDDGSPALSDEKAVRVGVGHTWSGVLQPVNADGSSVFKLGR
                     TVPVKFALTGQSAGITNAVARLYVAKVTNDVTGTEEEADSTSNATEGNLFRYSDGEYV
                     FNLSTSGLSAGTYQLRIDMGDGVLRTVRISLR"
BASE COUNT          501 a         1151 c         1304 g          633 t
ORIGIN      
        1 gcgcagtcgt cgcggcgtca acgcgcccgc aggcccggcg ctgaacggct ctaaagggta
       61 atccgactcg ctcataagga gcagcccccg cgccgcctcc gcaatctccg ccagcaactg
      121 ctcgtcgctt ttcatagaga agtaaaatga gggcggcccc ggcgtttact ccgacggggc
      181 cgccctctga aattggcggg tggccgaagc ccccgcctcg ccggcctacc tgagcgagat
      241 tctgaccgtg cggagcacgc cgtctcccat gtctatgcgg agttggtacg tgcctgcgct
      301 cagcccgctg gtgctcaggt tgaagacgta ctcgccgtcg gagtagcgga agaggttgcc
      361 ctccgtcgcg ttcgaggtcg agtcagcctc ctcctccgtg cccgtcacgt cgttcgtgac
      421 cttcgccacg tagagccgtg cgacggcgtt ggtgatgccg gcgctctgcc ccgtcagcgc
      481 gaacttcacg gggacggtgc ggcccagctt gaagaccgag ctgccgtcgg cgttgacggg
      541 ctgcaagacg cccgaccatg tgtgcccgac gccgacgcgc acggccttct cgtcggagag
      601 ggcggggctg ccgtcgtcgg tcacgcgcac gccgaacgtg tgaacctgcc cggcctgcgc
      661 gagcgtgggc gcccaagtga cgacgcccgt cgaggagttg atggacgcgc ccgcgggggc
      721 gcccaccaga ctgtaagtga gcgcctgagc gggcgcgtcg ccgtccgtgg ccgaggccgc
      781 gaagacgagc gttccgccga cgatcaccgt ctggtcggct atggccgaga gcacgggggc
      841 ctggttcacc tcgttgacag tgatgctggc cgtggcttcg gcgaccgcct cgccgtccga
      901 gaccctgacc ttgaagtcgt agggcgagcc agtgccgccc tgcgcctcgg tcggcgacca
      961 tgtgaagaca ccggtcgccc cgtcaatcgc ggcgccgtcg ggcgcgccga cgagcgagaa
     1021 ggtcagcgcc tgcccgtcaa cgtcggcggc ctgcgccgtg aaggtgtagg ccgccagttc
     1081 gttgacggtt gccgaggccg gcacgttcac gagcgtcggc ttgtcgttga ccgattcgac
     1141 cgtgacgaag accgtgccgg tcgcgcactt cgagtcgggc gagccggagg tggtgccgtc
     1201 gtcgcacacc ttgtaggtga acgaggccgg gccgttgtag tcggcgtcgg gcgtgtaagt
     1261 gacctgcccg gcggcgagcg agacgctgcc gtgcgtgtcg gcggtggcgg tgacggacgc
     1321 gaccgagagc gtctggcccg actcgtccgc cgcgcccgcg ccgtcgttcg aggtcaggtc
     1381 gccagccgcg aaggcgagcg gcgtgtcctc ctgcgtcgtc ttgaagtcgt ccgaagccgc
     1441 gggcgcgtcg ttgacggggg tgacggaaat ttccaccttc gagatgttcg agtcgcgcag
     1501 gccgtcgttg accttgaagg tgaagctgtc gtccccgtgg tagtcgcctt gcggcgtgta
     1561 ggtgacgttc tcgccgtcgc ccgtgagcgt gccgtgcgcg gggccgctca cgatgacgta
     1621 ggtgagcggg ttgttgttcg ggctcaccgc atcgaggttg atggcggcgg gcgtgtcttc
     1681 gggtgtgaag acggtctgcc cggccgtgcc cggcgggttc gagccgttcg tgccggcctc
     1741 gacgcagttc tcgaccgcgt cgggcaggtt cgagaagaag tcgtagcccg tcagcgcctc
     1801 gacctggtca accgtggtga ggtagccctc ccacgggttg ttccttatgc cctgcacgtt
     1861 gggcatgatg accgcgatgg ttctcgcccc gcaggtgacg cgcgcgaggt cgtcgccgcc
     1921 gtccttcggt aagacgagcg ccaccttcca cgtgtgcgaa ggcaccgcga cgcgaccgcc
     1981 cgcgatggtc gtggcggcgc cggcgctgcc cgccccgccc gtgcccacgc cgcccgcgac
     2041 gacgtaaagc tcgttggcgg ggttgagcgt gcgcaggtag ccctccatca ccgcccacgg
     2101 cccctgattg ttgtcgggcg cctgcggcag catgttcgtc ataaggaacg tcgcctggtt
     2161 gatcgggatg gacgtttcct tgtcgcggtc ggcgttcggc accatgtggc cgcggtcgaa
     2221 gccggagccc acgtagtcag tgtgcagaac cctgtaccag tcttcgggga cggccgggtc
     2281 gggccggaac gtgtcaacgc gcgagagcga gcccgtccag tcgtccgaca ggtgccagct
     2341 aacccagttg ggcgtgccgc ggtcgcggtt gtaggagagc gcgaactcgg gcttctccat
     2401 caggtagttg ttcggcttgc ttgtgtccgc gacggcgccc gtcgggttgc ccatcgtcag
     2461 gtggacggag ggcgggtagg gcggcgccgt gccggtcgag atagtgaacg accacgtgtg
     2521 gtcggacacg agcgagtcag tgttcgcggc agagtcgtcg ccgtcctggt cgtgaaccga
     2581 ggcggcgtaa accgtaacgg tgcactgctc gcctgccgag aagttaacgt ccggcgtgat
     2641 gacgtagctc accgggcccg agtaaatcgc ggcgtcgttg tgccgacccg acacggcgca
     2701 gttgatgtcg aaccagccgg gggcgaggtc aacggcctcg gtgaaggtga cggtgatgct
     2761 cgcgtcgcga ggcgcgttcg agccgccgga gcgcgggtct gtggtgatga ccgcggggcc
     2821 gagctcgacg atgggcgccg tctgccgcgg gttgggcgtc cccgacacga agtcgttggc
     2881 gttgttgttc gtgtcggtcg agccgttcga cttgcggaag agcgccgtcg tgttgctgcc
     2941 ggccggcgcc ttcgtgccgc cctcgccgca cgtggccgtg ccgtagccga cgaagtcaac
     3001 caggtcgggg tcttcgagcg ggcactggcc gtcggcaccc gagagccctt cgaggttttt
     3061 gacgagggca atcttgccgt tcgtcgcgct catgttgatg ccgcccgtga cgttggccgg
     3121 ctggagcgcg gcgcccgtgg cgccgcccga cgcgagacgc accaagtaat actcgcccgg
     3181 cgcgatgacg ccgccgaggt aagccttgtt gctctcccag ccgctcccgt cgaaggcggc
     3241 gtattgcaga gaccagcccg tcacgtcgaa ggaagtcgtg ccggggttgt aaagctcgac
     3301 gtagtcgttg cggtaagtgg cgccggagtt gccgccgccg ccgtaaacct ggctgatgac
     3361 gatgtgctca acgacgggcg cgggctgctc gacgttcaag gttatcgtgc ccgagcccgt
     3421 gcgcccttcg gcgtcggaga ccgtgaaggg cagcgacttc gtgccgggcg tcgtgccggg
     3481 cgcgaccgtg gccgtgaagg agaagctgtt gttgccgccg tcggcgaagg actgcgaggc
     3541 taagccgcct atggccgtca ggttcgcggt gacggacagg cccgtgctc
//
LOCUS       DASPKR010000064         4728 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1431703, whole genome shotgun sequence.
ACCESSION   DASPKR010000064 DASPKR010000000
VERSION     DASPKR010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4728)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4728
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1431703"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1719)
                     /locus_tag="VD968_01945"
     CDS             complement(<1..1719)
                     /locus_tag="VD968_01945"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HYE13183.1"
                     /translation="MPAFGKSAGSAGGSRSKAAKRAGKARKTEAPRKADGAAEPRAEA
                     STPEPKSVFKRDGDPFLVATAAEPQQTPAPRPTPPPASPAQRDATRPPGTEQRSPVPP
                     QSRLNVQDPTAPPGTQRTAPAQPPGTQIEQPAAPRTPTTTTTTTDPAQTQSTDPLAPA
                     TEELQEPEFPAVQPRPVPPMPSLARVGVVSGDTLPLTLNEAVRRALENNNDIEFARAD
                     VRLNEQTLLALEGVYDPVFTYRPEYNSSVRPVPNIFGGAGASGTVSTTDYNNDVSITR
                     QFGRGGGNYSYFFNNTRENTTSGASTLNPLFSSAQGVNFTQPLWRNRSIDRNRREIRV
                     QRKRLEQSDADFRRRTIEVISQVQRAYWDLVFALREEQNQIANLNLTRENFRRTEASV
                     AAGAVAPLERSEVQTELSNRESALLVATQNVTIAENNLKNLLLKDPLSPDWSKVIVPT
                     DTPTFDEAPLNLESALKEARANRPELRRLNLQEEISDIDIQYFKNQTKPQIDLTGTFS
                     TTGLAGTPAAATTTAGPLIPDPEVAQNRNASSFLLAEINRLRALRGEGPAQVPTVTVT
                     EGGNVPS"
     gene            2271..3278
                     /gene="gap"
                     /locus_tag="VD968_01950"
     CDS             2271..3278
                     /gene="gap"
                     /locus_tag="VD968_01950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011897301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0019682 - glyceraldehyde-3-phosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HYE13184.1"
                     /translation="MAIKVGINGFGRIGRNVLRASLGDADIDFVAVNDITDTKTLAHL
                     LKYDSILGNLEEEVSATEKGIRVGGDEFVVFAEKDPAQIPWESVGAEIVVESTGRFTN
                     AEDARKHLRGTVKKVIISAPAKNEDITIVLGVNEGSYDPAAHNVISNASCTTNCLAPV
                     AKVIHEKFGVVSAQMTTIHSYTNDQQLLDLPHKDLRRARAAALSMIPTSTGAAKAVAL
                     VLPELKGKFDGISVRVPTPNVSLVDVVIEVGRETTTEEVNQALKDAANEELEGILGFS
                     EEPLVSVDFRKNPNSSIVDADYTKVIGGNLVKVLSWYDNEWGYSCRVRDLIKFIAGKG
                     L"
     gene            3357..4559
                     /locus_tag="VD968_01955"
     CDS             3357..4559
                     /locus_tag="VD968_01955"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001036338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HYE13185.1"
                     /translation="MSKLSIRDLDLAGRRVFVRVDFNVPIKDGAVTDDTRITAALPTI
                     RFATERGARVVLASHLGRPKGERVEKYSLRPVHAYLAGVDFIKSVEFAEDCVGAEPRA
                     ASEALKDGEVLLLQNLRFHKGEEANDDAFARQLAELCDGLYVNDAFGAAHRAHASTAG
                     IVKHVERAAAGLLMEKELEYLGRALNNPERPFVAILGGAKVSDKIPVINSLITRRVDK
                     ILIGGAMAYTFFKAEGFTVGKSLVENEMLGTAREIKGRAEAEGVRLVLPTDHQVVDGF
                     DPLRSRKTIPIEFTNIGHVGLDIGAETVALFSRELEGAKTIIWNGPMGMFEEKGFEEG
                     TVGVARAVAGAAEAGATVIVGGGDSVAAVTDAGVADKITHISTGGGATLEFLAGDELP
                     GVAALNDK"
BASE COUNT          798 a         1496 c         1632 g          802 t
ORIGIN      
        1 gctcggcacg ttgccgcctt cggtcaccgt cacggtgggc acctgcgcag gcccctcgcc
       61 gcgcagcgcg cgcaggcggt taatctctgc gagcaagaag gagctggcgt tccggttctg
      121 cgcgacctct gggtcgggga tgagcggccc cgccgtcgtc gtggccgcgg ccggcgtgcc
      181 ggcgaggccg gtggtcgaga aggtgcccgt caggtcaatc tgcggcttcg tctggttctt
      241 gaaatattga atgtctatgt cgcttatctc ttcctgaagg ttcaggcggc gcagttcggg
      301 gcggttcgcg cgcgcctcct tgagcgccga ctcgaggttg agcggcgcct cgtcaaaagt
      361 cggcgtgtcg gtggggacaa tcaccttcga ccagtcgggc gagagcgggt ctttgagcag
      421 aaggttcttc aggttgttct cggcgatggt gacgttctgc gtggcgacga gcagcgccga
      481 ctcgcggttt gaaagctccg tctgcacctc ggagcgctcc agcggcgcga ccgcgccggc
      541 cgccacgctc gcttccgtgc ggcggaagtt ctcgcgcgta aggttgaggt tggctatctg
      601 gttctgctcc tcgcgcaggg caaagaccaa gtcccagtag gcgcgctgca cctgcgagat
      661 gacctcgatg gtgcggcggc ggaagtcggc gtccgactgt tcaagccgct tgcgctgcac
      721 tcgaatttcg cggcggttgc ggtcaatcga gcggttgcgc cagagcggct gagtgaagtt
      781 gacgccctgc gccgaggaga agagcgggtt cagcgtcgag gcgccggagg tcgtgttctc
      841 gcgggtgttg ttgaagaagt aagagtagtt gccgccgccg cgcccgaact ggcgcgtgat
      901 ggagacatcg ttgttgtagt ccgtggttga gacagtgccg gaggcgccgg cgccgccgaa
      961 gatgttcggg acggggcgca cgctgctgtt gtactcgggc ctgtaggtga agaccgggtc
     1021 atagacgcct tcgagggcga gaagcgtctg ctcattcagg cgcacgtcgg cgcgcgcgaa
     1081 ctctatgtcg ttgttgttct caagcgcgcg gcggacggcc tcgttgagcg tgagcgggag
     1141 cgtgtcgccg ctgacgacgc ccacgcgcgc gagcgaaggc atcggaggca ctggccgggg
     1201 ctgcacggcg gggaactcgg gctcctgcaa ctcctcggtc gcgggcgcga gcgggtctgt
     1261 gctctgcgtc tgagccgggt cggtggtcgt cgtcgtggtc gtgggggtgc gcggcgccgc
     1321 gggctgctcg atttgcgtgc cgggcggctg cgcgggggcc gtgcgttgcg tccccggagg
     1381 ggcggtcggg tcctgcacgt tcaggcgcga ctgcggaggg acgggagagc gctgctccgt
     1441 ccccggaggg cgcgtcgcgt cgcgctgagc gggggaggcg ggcgggggcg tcggccgggg
     1501 cgcgggcgtc tgctgcggct cggcggccgt ggctacgagg aaggggtcgc cgtcgcgctt
     1561 gaatacgctc ttcggctcgg gcgtggaggc ttcggcccgc ggctcggccg ccccgtcggc
     1621 cttgcgcggc gcttccgtct tcctcgcctt cccggcgcgc ttcgccgcct tagagcgaga
     1681 gccgcccgcc gagcccgcgc ttttcccaaa agcgggcacg gcgttcccga aagcgagaaa
     1741 cgcggagagg aggaggacgg cgggcgcctg ggcgtgccac gcgcgggcgc gcagtccctg
     1801 gggctgattt agcatgttca cttccatata cactctcgaa actaccggca ggagacttac
     1861 ggtcgccccg gcgcgcggtc aaagcacttc gctgtctgta gatgattgca aactccgcgc
     1921 cgctgccgcg atagtcggct cgtttttaac cacttaaggg cacaccggcg ggcctgagcg
     1981 tactacgcgc ggcccgcgcg cggtgtttca aaaacatgga cttagcggcg gccacgcacg
     2041 tccccgcggc ggcaggagtt ttgaggcgcg cgggccgctg agggttcgct tgacactgcg
     2101 agcgggcgcg gctatcttgc catgttaaag agcaagttac cgcaaccgac agggcttcaa
     2161 gcgcacacgt gcggaggggg cggagggcgc gcgccgcgcc cgcggccgac ttctgcgcgg
     2221 ggcggccccg gcctgttgag aatatcgcaa ccgtcaggag gcttccttaa atggcaatca
     2281 aggtcggcat aaacgggttc gggcgcatcg gccgcaacgt gctgcgggcc agcttgggcg
     2341 acgccgacat agacttcgtc gccgtcaacg acataaccga cactaagacg ctcgcgcacc
     2401 tgctcaagta cgactccata ctcggcaacc tcgaggagga agtctccgcg accgagaagg
     2461 gaatcagggt gggcggagac gagttcgtcg tcttcgccga gaaagacccc gcgcagatac
     2521 cgtgggagtc tgtcggcgcc gagatagtcg tcgagtcaac gggccgcttc acgaacgccg
     2581 aggacgcgcg caagcacctg cgcggcaccg tcaagaaggt catcatctcc gcgcccgcca
     2641 agaacgagga catcacgatc gtgctcggcg tcaacgaggg ctcttacgac ccggccgcgc
     2701 acaacgtaat ctcgaacgcc tcctgcacga cgaactgcct cgcgcccgtc gccaaggtca
     2761 tacacgagaa gttcggtgtc gtctccgcgc agatgacgac catccactcc tacacgaacg
     2821 accagcagtt gctcgacctg ccgcacaagg acttgcgccg cgcccgcgcc gccgcgctct
     2881 cgatgattcc gacctcgacg ggcgccgcga aggccgtcgc gctcgtgctc cccgaattga
     2941 agggcaagtt cgacggcatc tcggttcgcg tgccgacgcc gaacgtctcg ctcgttgacg
     3001 tggtgataga agttggccgt gagacgacga ccgaggaggt caaccaggcg ctcaaggacg
     3061 ctgccaacga ggagcttgag ggcatcctcg gcttctccga ggagccgctc gtctccgttg
     3121 acttccgcaa gaaccctaac tcgtcaatcg ttgacgccga ctacaccaaa gtcattggcg
     3181 gtaacctcgt caaggtgctc tcctggtacg acaacgagtg gggctactcc tgccgcgtcc
     3241 gcgaccttat caagttcatc gccgggaaag ggctctgaga aagtaatcag ccgtccgtaa
     3301 ccagttatag gctctccgtt gataactggt cactgacggc tgacggctga cgacttatga
     3361 gcaaactctc catcagagac ctcgacctag ccggcaggcg cgttttcgtg cgcgtggact
     3421 tcaacgtgcc gattaaggac ggcgccgtca cggacgacac gcgcatcacg gcggcgctgc
     3481 cgacgatacg cttcgcaacg gagcgcggcg cgcgcgtcgt gctcgcctcg cacctgggga
     3541 ggccgaaggg cgagcgcgtc gagaagtaca gcctccgccc cgtccacgcc tacctcgcgg
     3601 gcgttgactt cataaagtcc gtcgagttcg ccgaggactg cgtcggcgcc gagccgcgcg
     3661 ccgcgtccga ggccctgaag gacggcgagg tgctgctcct ccaaaatctt cgctttcaca
     3721 agggggagga ggcgaacgac gacgccttcg cgcggcagct agccgagctt tgcgacggcc
     3781 tctacgtcaa cgacgccttc ggcgccgcgc accgcgccca cgcctcgaca gccgggatcg
     3841 tgaagcacgt tgagcgcgca gcggccgggc tcctgatgga gaaggagctc gagtacctcg
     3901 gccgagcgct caacaacccg gagcggccct tcgtcgccat tctcggcggc gcgaaggtct
     3961 cggacaagat tcccgtcatc aactcgctca tcacccgccg cgtggacaag attctcatag
     4021 gcggcgcgat ggcctacacc ttcttcaagg ccgagggctt taccgtgggc aagtcgctcg
     4081 tcgagaacga gatgctgggc acggcccgcg agataaaggg ccgggccgag gccgagggcg
     4141 tcaggctcgt gctcccgacc gaccaccagg tcgttgacgg cttcgacccg ctcaggagcc
     4201 gcaagaccat ccccatagag ttcaccaaca tcggccacgt cgggctcgac atcggcgccg
     4261 agacggtcgc gctattttcg cgcgagctgg agggcgcgaa gacgatcatc tggaacggcc
     4321 cgatgggcat gttcgaggag aagggcttcg aggaggggac ggtcggcgtc gcgcgcgcgg
     4381 tcgccggggc cgcggaggcc ggcgcgaccg tcatcgtcgg cggcggcgac tcggtcgcgg
     4441 ccgtcaccga cgcgggcgtc gccgacaaga tcacacacat ctcgaccggc ggcggcgcga
     4501 ccctcgaatt cctcgccggt gacgaactgc cgggcgtcgc ggcgctcaac gacaaataga
     4561 attcagaagt caggagtcag aagtcagaat aaaaaaacag gaatggtcgc cgccttttta
     4621 ttctgactcc tggcttctga cccctgcctt atgagaagac ctgtcatcgc cggaaactgg
     4681 aagatgtaca agctggtcgc cgagtcagtg gagacggcgc tggcgctg
//
LOCUS       DASPKR010000065        13413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1302430, whole genome shotgun sequence.
ACCESSION   DASPKR010000065 DASPKR010000000
VERSION     DASPKR010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 13413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13413)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13413
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1302430"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..4560)
                     /locus_tag="VD968_01960"
     CDS             complement(<1..4560)
                     /locus_tag="VD968_01960"
                     /inference="COORDINATES: protein motif:HMM:NF014214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005615 - extracellular space [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M36 family metallopeptidase"
                     /protein_id="HYE13186.1"
                     /translation="MRLNRFLRASLFFAVVATVLVSSLFVSSAQKQGARLPREFDVRR
                     PQDAPRRAAAAAAARAPEAAQLKALRSLEGAAGAKLSVQYNRLTGTPRHMFARSGYLS
                     PPSAEAPERIARDFVRRWQGVFRFNEGDIESLRLKSRATLPDMGVTVLLFEQQVGGVP
                     VYKGEVLVNVNRAGQIMSVGGDSFPQLKVSNSLALTPAQAVAAAARSMGFADYEPREA
                     GTKRVPRSFGDLEPTFVEAPLFARGGPFSEDIAVTHVIFPVGAEGRHAYNFVLTAPQL
                     RGISWNHVVDAETGEVLRRSSLTSTFGDAGGGPINSRRATFRPDVQNVVESFNPVGTA
                     VGKVFDGMPTALSGRRTCSGNLPGRPCNGASGTGGTVGEGYGRSDAPGDRPDYQTDES
                     ETSRDNGRGFKESLVRARVVAPFAEPSTPLFSQIYNTPFGQVLRGFPDAANPTAANYG
                     SRFGWFYLPTGTGGVEIFESDNNRASTRAYKYEMSQEARQRNFPANSPTGNKSQPFSA
                     DLTPLASSVTLRDGRVLSSVFQSRYTEGNNVLVADDRFNDDDTTIGIRGYSANRHFDA
                     GRFTFTNGYEYGGQDADDAIPGTNGLVECTVINLCEVFFYPEGTEQDVYAGTVALFYY
                     TNLLHDYMYSVGFTEPTWNFQQDNFGLGGAGQDALSAQVQDGSGTDNASMNTGNDGSP
                     PRMQMFLFTEPTFRRSDGDFDFDVVAHEYYHGVSNRSVGKGEQDCLGNPLVGESGGQG
                     EGWSDAIACSMADDDAVGEYVTGEFDIGIRRLPYTNYRWSYASINGNGLSRRDQQPPD
                     ADPGAVPFEVHDVGEVFAAMLWDLRELLIMKDPAGVFFDGTRRLNGPALTSSEFFIGT
                     RKVRSIDMRHPIDYRAEFGTTAPGVTFSGAPEPPGGITPPEQLQSQVPTIKADEHIVR
                     PGLVTAEIQSLGHRNGPLATAVARGARLADTLVLRGMQLSPCQPSIVDTRDSILLADE
                     ELTGGENRSIIWRAFASHGVGQNAQSTTGEGDQSSVVVEDFTVPASVTVCEQLGPLAA
                     PDFALANSAANKVTVTVNGGVPVAGAAQYIISRSFTADGPFTKVGEIPATQTTFEDSN
                     LSGGQTYFYQVRASRDAETNCVSPAQTKSVTVTNGVVIAPAPTFFGVDQVIDPKTGTS
                     LVLKWNAAITPDPTGTVFSLCNDCVYDVYRVEHVEPGNGTQEPTFEPSEANRIAQGVA
                     GTEYTDTNLQLGQIYYYIVQARNPSGKLDTDDTGNRRVRWNAPTIDSFTSPTPFPLET
                     YESPSADARFQPPLQESGSDPQDGLPVWQRVTEEPQPGGSTSSMMYAPDFDPGSDGAQ
                     SDISTVIGPLTLSPTSIMEFDHKFSTEARFDGGVLEVAKGGPNFNSTPYPDNTTTFDL
                     GNYIIEGLYNARLDGDQLGVMLSHLQGRRAYTGIKGLHHVRVALGEFAPGGHNNQEGA
                     PIYLRFRMSSDVSTSNGEDSGWYVDNLVIHNLGTGSGTPTPTPTPTTTPTPTTTPTPT
                     PTVTPTPTATPTPTATPTPNASPTPL"
     gene            complement(4938..6644)
                     /locus_tag="VD968_01965"
     CDS             complement(4938..6644)
                     /locus_tag="VD968_01965"
                     /inference="COORDINATES: protein motif:HMM:TIGR03663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase activity-associated protein Agl23"
                     /protein_id="HYE13187.1"
                     /translation="MSTGSTKRRSSKRGEDLWGSQRVEVARPAAPPEEAEERVSARAW
                     LIAGALILVAAAALRLFAPGLKPLHHDEGVNGFFLTNIVRGAGWKYDPTNYHGPTLYY
                     LTLPVVAVTGLTTFALRFVTAAFGVGTVWLALCLRRRLGSVGSLAAAALIAVSPAAVY
                     YSRYYIHETLFLFFTLAMVVTALRFYETRRPLYLMLLSASTALLFATKETAFITVGTL
                     VLATLVSWAWASLTRAAAPPAPPQPARKRKGREAAYGRGEDFRPRRILAAFGPPGRAA
                     ALVVGALALFAFVWIVFYSSFFKNWQGAFWDSFRAFDVWSKTGTSEFHAKPFHTYLKW
                     LVQEEAPVLVLATAGTAAALFERRRNRFAIFAGAWAFGILLAYSLIPYKTPWLVLNFV
                     VPMCLAAGYALGAFDRMGPAGAKARAPVLVVGACAVLFAAYQTAVLNFSRYDDDRYPY
                     VYSHSRRELHDLVVELERLARRSGRGQSAGISVASPEYWPLPWYLRDYKGVAYDTRIL
                     SAYDPATTAVVIGRDSDIAAENQTPRLRSLLAGRYQQVGIYDMRPGVRLVVFARSDIA
                     GR"
     gene            complement(6610..8703)
                     /locus_tag="VD968_01970"
     CDS             complement(6610..8703)
                     /locus_tag="VD968_01970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13188.1"
                     /translation="MPFAFLLALAAVAGATTLTYLYDRDAPLWPRLCAGVCVGLAALG
                     LVGFALASLLGMTAGALALSGVAAASPLLLLLKPERRERLMADARRSVGATKKAGAGV
                     VVFYLAAAVLFWMVFAGAMYETREGVFTATDTNIGDLPFHVAVITGFAHGENFPPEHP
                     EFAGARLTYPFVVDFVTAMFVRAGATLEGALFWQNLAMMLALVGLLHRWALELTRDRA
                     AALMTPALVLLSGGFGWLAFAKEAATGERGVFGLLASLPHDYTIMRHIGYAWGNAVTA
                     LFVPQRSILLGVAVAIVVWTLWWQAAGEEPEAKGAGVKDKGRAGRKKPKRGGKAGRET
                     EAPAARDESLAFLLKPFRLTPMIAAGLVAGLLPLTHAHSFVVMMLMGACLALLQAGAL
                     MFWKDGREGAGLWAVWRPWAAFAAAASALAVPQMLWATSGSSVQAGRFFGWEFGWDNG
                     EENAVWFWVKNTGVFIPVLLAALALRWRPRLVTPRLLYFYLPFTLCFVVPNVYKLSPW
                     VWDNIKVLLYWWIASAPLVALVLARLWRRGGALKAAAAALLVAQTLAGGLDVWRAASG
                     AVAHRTFDADGLRLAELIMRETPPRSLILHAPTYNDPVYMTGRRTFLGYPGHIWSHGL
                     DHTGRERELKSIYAGGPDASALIASNRIQYVVVGPLEREEMRKYGLRINETFFQRYTK
                     VGEAGEYRLYKTTQQ"
     gene            8796..9896
                     /gene="ychF"
                     /locus_tag="VD968_01975"
     CDS             8796..9896
                     /gene="ychF"
                     /locus_tag="VD968_01975"
                     /inference="COORDINATES: protein motif:HMM:TIGR00092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HYE13189.1"
                     /translation="MLRAGIVGLPNVGKSTLFNALTAQASALAANYPFATIEPNVGVV
                     PVPDERLEPLAKLVKTTTIVPATVEFVDIAGLVRGASKGEGLGNQFLANIRETDAVIQ
                     VVRCFEDEQVIHVEGSVDPRRDIETIQIELALADLASAERRRERAQKTANGGDKAARD
                     EMGVIDKLLATLSEGRPARTVELDEQERAVARGLFLLTMKPTIYAANVDEAALADPDA
                     NPHVRTVREIAAAEGAEVVVICAQLEAELVALAPEERAGYLRELGLESSGVDELIRSA
                     YRLLGLMSFLTAGEKEVRAWTIPRGTRAPQAAGTIHTDIERGFIRAEVISYEELLRAG
                     SYAAAREQGLLRLEGKDYVMREGDVVHFRFNV"
     gene            9958..10224
                     /locus_tag="VD968_01980"
     CDS             9958..10224
                     /locus_tag="VD968_01980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13190.1"
                     /translation="MQDAPVQIDLGSVETLIGNLQFTFVVSPEGDAHLQLYASDPSSA
                     GKAGVSLMLDAGGYERLKAIIRGADGVIDRMISEGRIKRMVLPY"
     gene            10313..11881
                     /locus_tag="VD968_01985"
     CDS             10313..11881
                     /locus_tag="VD968_01985"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HYE13191.1"
                     /translation="MSPSRDDARPGAETKRGARAYSSPPVYLSNRPALSLGRGPETHA
                     ARKVQFKLAVSRAGDVAEQEADRAAERVVSAPEAEGVGPTAQGSGARETLRRSSEAGV
                     SLGAGDAPESVRGVLSSAGRQLDDGARAFMEPRFGMSFGHVRVHADDRAADSARDVGA
                     LAYTVGRDIVFGAGQFAPDTQSGRRLLAHELAHVAQQEPSPTLRRQPINSTPVNVSAV
                     AAEVQKLVRPDKKEKEALEKLNGLDMRDLLNVVEKLYNDIGDQNDEGKRRAFGILNGL
                     LATVPNDETKNVNVSRLRTAFDAAPSRHLRNPTSDTDLGTTPTHSASRREGQGKAKHV
                     AQIGDWGEDPLGNTWVRHSDGIRTYFGTTTPKKERSSAWLGNNPGNADYVKSLTKRAI
                     SSFRWGKGAHHFAIYFTAEDGAADLRDRIKTFQTVGNHVRAHLGNNPKENNNFELYIE
                     HIQSAAPGVSEGTPTSEWTTDDAKWRQLLAGYKKAEGWKEGKTLTAANVGTVSSDPKD
                     APAVEYYKTLLGAP"
     gene            12061..>13413
                     /locus_tag="VD968_01990"
     CDS             12061..>13413
                     /locus_tag="VD968_01990"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HYE13192.1"
                     /translation="MLAAQTHDRADKPAGAEPERADAAPAMRGAPLLPSLRPTPAPLP
                     LALQRKLTVGDPDDAYEEEADSVAERVMRMPDTTLFLRRKCNCGGECEECGAGAPRLM
                     RLASDRAGAGETAPPVVSEVLASPGRPLDAATREFMEPRLGLDLGGVRVHTGGRAAES
                     ARAVGALAYTVGRDIVFGLGQYAPDSGAGRKLLAHELAHVAQQSGGAPVVRRACAPGR
                     KGIGAQEPASKCAPGDPLFVHGPRLKFCTDSDELLEGQDKLFDDWRAKASAASSVELH
                     GNASTEGPSGDYNLKLSCHRAAAMAVKLASAGVSTPATLHAHGATAVYGDALENRNVV
                     LVTKAPVKKEEPKGEEKQEPKEKEKEPPKGTNQLDDCKEDAGQPASIRAAVSRALGDL
                     DTAISALAARPLTDHAKNSLFIVLRASDDATADTILDRLRKIRKGLPSVLITCDQKDK
                     I"
BASE COUNT         2231 a         4456 c         4774 g         1952 t
ORIGIN      
        1 cagcggcgtc ggcgacgcgt tgggcgtggg cgttgccgtc ggcgtgggcg tcgcggtcgg
       61 cgtcggggtc acggtcggcg taggcgtcgg tgtggtagta ggcgtcggcg tggttgtcgg
      121 cgtgggcgta ggcgtcggcg tacccgagcc tgtgccgagg ttgtgtatga cgaggttgtc
      181 aacgtaccag ccggagtcct cgccgttgct cgtgctcacg tccgagctca tgcggaagcg
      241 caggtagatg ggcgccccct cctggttgtt gtggccgccc ggcgcgaact cgccgagcgc
      301 gacgcggacg tggtgcagcc ccttgatgcc tgtgtaggcg cggcgccctt gcaggtgcga
      361 gagcatcacg ccgagctggt cgccgtcgag gcgcgcgttg tagagcccct cgatgatgta
      421 gttgccgagg tcgaaggtgg tcgtgttgtc cgggtagggc gtcgagttga agttcgggcc
      481 gcccttcgct acctcgagga cgccgccgtc gaagcgggcc tcggtcgaga acttgtggtc
      541 gaactccatg atggaggtcg ggctgagcgt gagcgggcct atgacggttg agatgtcgct
      601 ctgcgccccg tccgagccgg ggtcgaagtc gggcgcgtac atcatcgagg aggtcgagcc
      661 gccgggctgc ggctcctcgg tgacgcgctg ccagacgggc agcccgtcct gcgggtcgct
      721 gcccgactct tgcagcggcg gctggaagcg cgcgtcggcc gagggcgact cgtaggtctc
      781 gagcgggaaa ggcgtcggcg acgtgaagct gtctatcgtc ggggcgttcc agcgcacgcg
      841 gcggttgccc gtgtcgtcgg tgtcgagctt gccgctcggg ttccgcgcct gcacgatgta
      901 gtagtaaatc tggcctagct gtaggttcgt gtccgtgtac tccgtccccg cgaccccttg
      961 cgcgatgcgg ttcgcctccg agggctcgaa ggtcggctcc tgcgttccgt tgcccggctc
     1021 gacgtgctcg acgcggtaca cgtcatagac gcagtcgttg cagaggctga agaccgtccc
     1081 cgtcgggtcg ggagtgatgg cggcgttcca cttgaggacg aggctcgtgc ccgtcttggg
     1141 gtctatgacc tggtcaacgc cgaagaaggt gggggcgggc gcgatgacga cgccgtttgt
     1201 gacggtgacg ctcttggtct gcgcgggcga gacgcagttg gtctcggcgt cgcggctcgc
     1261 gcgcacctgg tagaagtacg tttggccgcc ggagaggttg ctgtcctcga aggtggtctg
     1321 cgtggcggga atctccccga ccttcgtgaa ggggccgtcg gccgtgaacg agcgcgagat
     1381 gatgtactga gcggcgcccg cgacggggac gccgccgttg acggtgacgg tgaccttgtt
     1441 ggccgcgctg ttggcgagcg cgaagtcggg cgcggcgagc ggcccgagct gctcgcagac
     1501 ggtgacggag gccggcaccg tgaaatcttc gaccacgacg ctcgactggt cgccctcgcc
     1561 cgtcgttgac tgcgcgttct gcccgacgcc gtggctggcg aaggcgcgcc agatgatcga
     1621 gcggttctcg ccgcccgtca gctcctcgtc ggcgaggagg atggagtcgc gcgtgtcaac
     1681 gatcgaaggc tggcagggcg acagttgcat gccgcgcagg acgagcgtgt cggcgaggcg
     1741 ggcgccccgc gcgacggccg tcgccagcgg gccgttgcgg tggccgagcg actgtatctc
     1801 ggccgttacc aagccgggcc ggacgatgtg ctcgtcggcc ttaatcgtcg gcacctgcga
     1861 ctgaagctgc tccgggggcg tgatgccgcc cgggggctcc ggcgcgccgc tgaaggtgac
     1921 gcccggagcg gtcgtgccga actcggctcg gtagtcaatg gggtggcgca tgtctattga
     1981 gcgaaccttg cgcgtcccga tgaagaactc tgagctggtg agcgcggggc cgttcaggcg
     2041 gcgcgtgccg tcgaagaaga cgcccgcagg gtctttcatt atcagaagct cgcgcaagtc
     2101 ccagagcatc gcggcgaaga cctcgcccac gtcgtgaacc tcgaagggga cggcgccggg
     2161 gtctgcgtcg ggcggctgct ggtcgcggcg gctgaggccg ttgccgttta tcgaggcgta
     2221 agaccagcgg tagttggtgt aaggcaggcg gcgtatgcct atgtcgaact cgccggtgac
     2281 gtactcgccc acggcgtcgt cgtcggccat cgagcaggcg atggcgtcag accagccctc
     2341 gccctggccg cccgactcgc cgacgagcgg gttgccgagg cagtcctgct cgcccttgcc
     2401 gaccgagcgg ttcgagacgc cgtggtagta ctcgtgcgcg accacgtcga agtcgaagtc
     2461 gccgtcggag cggcggaagg tgggctcggt gaagaggaac atctgcatgc gcggcggcga
     2521 gccgtcgttg cctgtgttca tgctggcatt gtcggtgccg gagccgtcct gcacctgcgc
     2581 ggagagcgcg tcctggcctg cgccgccgag gccgaagttg tcctgctgga agttccaggt
     2641 cggctccgtg aacccgacgc tgtacatgta gtcgtgcaac aggttcgtgt agtagaagag
     2701 cgcgacggtg ccggcataga cgtcctgctc ggtgccctcg gggtagaaga agacctcgca
     2761 gaggtttatg accgtgcact cgacgaggcc gttcgtgccg gggatggcgt cgtccgcgtc
     2821 ctggccgccg tactcgtagc cgttggtgaa ggtgaagcgg ccggcgtcga agtggcggtt
     2881 ggcgctgtag ccgcgtatgc cgatcgtagt gtcgtcgtcg ttgaatcggt cgtcggccac
     2941 gaggacgttg ttgccctcgg tgtagcgcga ctggaagacg gaggagagca cgcgcccgtc
     3001 gcgcagcgtt acgcttgagg cgagcggcgt gaggtctgcc gagaagggct gactcttatt
     3061 gccggtcggc gagttggcgg ggaagttgcg ctggcgcgcc tcctgcgaca tctcgtactt
     3121 gtacgcgcgc gtggaggcgc ggttgttgtc tgactcgaat atctcgacgc cgcccgtccc
     3181 cgtcggcagg tagaaccagc cgaagcgcga gccgtagttt gcggccgtcg ggttggcggc
     3241 gtcggggaag cctcggagca cctgcccgaa gggcgtgttg tagatttgcg agaagagcgg
     3301 cgtcgagggc tcggcgaagg gtgccacgac gcgcgcgcga accaggctct ccttgaagcc
     3361 gcggccgttg tcgcggctcg tctccgactc gtcggtctgg tagtcgggcc ggtcgcccgg
     3421 cgcgtcagac ctgccgtagc cctcgcccac cgtgccgccc gtccccgagg cgccgttgca
     3481 ggggcggccc ggcaaattcc ccgagcaggt tcttcggccc gagagcgccg tcggcatccc
     3541 gtcgaagacc ttgccgacgg cggtgcctac cgggttgaac gactcgacca cgttctgcac
     3601 gtcggggcgg aaggtggcgc ggcggctgtt gatggggcct ccgccagcgt cgccgaaggt
     3661 gctcgtcagg cttgagcggc gcagcacctc gcccgtctcg gcgtcaacga cgtggttcca
     3721 ggagatgccg cggagctgcg gcgcggtgag cacgaagttg tacgcgtggc gcccctcggc
     3781 gccgacgggg aagatgacgt gcgtgacggc gatgtcttcg gagaaggggc cgccgcgcgc
     3841 gaagagcggc gcctcgacga aggtcggctc gaggtcgccg aagctgcgcg ggactctctt
     3901 cgtgccggcc tcgcgcggct cgtaatcggc gaagcccata gagcgcgcgg ccgcggcgac
     3961 ggcctgcgcg ggcgtgagcg ccagggagtt cgagaccttc aactgcggga agctgtcgcc
     4021 gcccacgctc attatctggc cggcgcggtt tacgttgact aagacttcgc ccttatagac
     4081 ggggacgccg ccgacctgct gctcgaagag caggacggtc acgcccatgt cggggagcgt
     4141 cgcacggctc ttgagcctga gcgactcgat gtcgccctcg ttgaagcgga agacgccctg
     4201 ccagcggcgc acgaagtcgc gcgcgatgcg ctcgggcgct tcggcgctcg gcggcgagag
     4261 gtagccggag cgcgcgaaca tgtggcgcgg ggtgccggtc agcctgttgt actgcaccga
     4321 gagcttagcg cccgccgcgc cttcgagcga gcggagcgcc ttgagctgcg cggcttcggg
     4381 cgcgcgggcc gcggccgccg ccgcggcccg gcgcggcgcg tcctgcgggc ggcgcacgtc
     4441 gaactcgcgc ggcagccgcg ctccctgctt ctgcgccgag gagacgaaga gtgacgagac
     4501 cagaacggtt gcgactacag cgaagaacag cgacgcgcga aggaatctat tcagtctcat
     4561 ttccccagac ctttcggtga agctcccgcc ggagcgaaac gtcttctcga ctgtgggaac
     4621 gcccccggcc gcggcgcgcg gggcaagcgc gaaagctcaa gcggtcgcgg gctttaaaag
     4681 gtttgcgggc cgtggccgcg cgtcggggca ggaaaggcgc ggcctttaac ggagacggct
     4741 ccgcccgtcc gtctccctga aagcggcaga gttcggaaag attgcgggtg cgcgtagggg
     4801 cccgcgacta aaaaggggga agtgtttgtg gaacgggtga cgagagcgag gggggccttc
     4861 gtcgtcacct gcggacaagt agtgtcggaa tgtgtgagac tttaaacccc gtccgttgct
     4921 ttgtcaatca ggagattcta gcggccggct atgtcgctgc gggcgaagac gacgaggcgc
     4981 acgccggggc gcatgtcgta gatgccgacc tgctggtagc ggccggcgag gagcgagcgc
     5041 aggcgcggcg tctggttctc ggcggcgatg tcgctgtcgc ggcctatgac gaccgccgtg
     5101 gtcgccgggt cgtaggcgct gagtatgcgc gtgtcgtagg ccacgccctt gtagtcgcgc
     5161 aagtaccacg gcagcggcca gtactcgggc gaggcgacgc ttatccccgc gctctgcccg
     5221 cgcccggagc gccgggcgag ccgctcaagc tccaccacga ggtcgtgcag ctcgcgccgc
     5281 gagtgagaat agacgtaagg gtatctgtcg tcgtcgtacc ggctgaagtt gagcacggcc
     5341 gtctggtacg cggcgaagag cacggcgcag gcgccgacga cgagcacggg cgcgcgcgcc
     5401 ttcgcgcccg caggccccat ccggtcgaag gcgccgagcg cgtagcccgc ggccaggcac
     5461 atcggcacga cgaagttaag cacgagccac ggcgtcttgt acgggatgag cgagtaggcc
     5521 agcagaattc cgaacgccca cgcgcccgcg aagatggcga agcggttgcg cctgcgctcg
     5581 aagagcgccg cggccgtgcc ggccgtagcc agcacgagca cgggcgcctc ctcctgcacg
     5641 agccacttca ggtaagtgtg gaagggcttc gcgtgaaact cgctcgtccc cgtcttgctc
     5701 caaacgtcga aggccctgaa cgagtcccag aaggcgccct gccagttctt gaagaaggag
     5761 gagtagaaga ctatccagac gaaggcgaag agcgcgagcg ccccaacgac gagcgccgcg
     5821 gcgcgccccg gcgggccgaa ggccgcgagg attcggcggg ggcggaagtc ttcgccgcgg
     5881 ccgtaggcgg cttccctgcc cttcctcttg cgcgcgggct gcggcggcgc cgggggcgct
     5941 gcggcgcgcg tgagcgacgc ccaggcccac gagactaagg tggcgagcac gagcgtcccc
     6001 acggtgatga aggccgtctc cttcgtcgcg aacagcagcg ccgtcgaggc cgagagcagc
     6061 atgaggtaga gcggccgccg cgtctcgtag aagcggagcg ccgtgacgac catcgccagc
     6121 gtgaagaaga ggaagagcgt ctcgtgtatg tagtagcgcg agtaatagac ggcggcgggc
     6181 gagacggcta tgagcgcggc ggctgcgagc gagccgaccg agccgagccg gcgccgaagg
     6241 cagagcgcga gccacacggt gccgacgccg aaggcggccg taacgaagcg cagcgcgaag
     6301 gtcgtaaggc cggtgacggc gaccacgggg agcgtcaggt agtagagggt cgggccgtgg
     6361 tagttggtcg ggtcgtactt ccagcccgcg ccgcgcacga tgttagtcag gaagaagccg
     6421 ttcacgccct cgtcgtgatg cagcggcttc agccccggcg cgaagagccg aagcgcggcg
     6481 gccgcgacga gtatcagggc gcccgctatc agccaggcgc gcgccgagac gcgctcctcc
     6541 gcctcttccg gaggcgcggc cgggcgcgcg acctcgacgc gctgcgagcc ccagaggtct
     6601 tcgccgcgct tactgctgcg tcgttttgta gagccggtac tcacccgctt cgccaacctt
     6661 cgtgtacctc tggaagaaag tctcgttgat gcgcaggccg tacttgcgca tctcctcgcg
     6721 ctcgagcggc ccgacgacga cgtactgaat gcggttcgag gctatcagcg ccgaagcgtc
     6781 agggccgccc gcgtatatgc tcttcagttc ccgctcgcgc cccgtgtggt cgaggccgtg
     6841 cgaccagatg tggccggggt agccgaggaa ggttcgccgc cccgtcatgt aaaccgggtc
     6901 attataagtc ggcgcgtgga gaatcaaaga gcgcggcggc gtctcgcgca tgatcaactc
     6961 ggcgagcctc aagccgtcgg cgtcgaacgt gcggtgcgcg acggcgccgg aggccgcccg
     7021 ccaaacgtcc aggccgcccg cgagcgtctg cgcgaccagg agcgccgcgg ccgcggcctt
     7081 gagcgccccg ccccggcgcc aaagccttgc gagcacgagc gcgaccagcg gcgcggaggc
     7141 tatccaccag tagagcagga cttttatgtt gtcccacacc cacggcgaca gcttatagac
     7201 gttcggcacg acgaagcaga gcgtgaacgg caggtagaag tagagcagcc gcggcgtcac
     7261 gagccgcggg cgccaccgca gcgccagcgc cgccagaagc acggggatga agactcccgt
     7321 attctttacc cagaaccaga cggcgttctc ctcgccgttg tcccagccga actcccagcc
     7381 gaagaagcgg cccgcctgaa ccgacgagcc ggacgtggcc cagagcatct gcgggacggc
     7441 gagcgcagac gccgccgccg cgaacgccgc ccacggcctc cacacggccc agagcccggc
     7501 cccctccctt ccgtctttcc agaacatcaa cgctcccgcc tgcaaaagcg ccaggcacgc
     7561 gcccatcaac atcatcacca cgaagctgtg cgcgtgcgtg agcggcagca gccccgctac
     7621 gagcccggct gctatcatcg gggtcaaccg gaagggcttg agtaaaaatg cgagagactc
     7681 gtcgcgggcg gccggggctt ccgtctcgcg ccccgccttg ccgccgcgct tcggcttctt
     7741 cctgccggcg cggcccttgt ctttaacgcc cgcgcctttc gcttcaggct cttcgcccgc
     7801 cgcctgccac cagagcgtcc agaccactat ggcgacggcg acgccgagca gaatgctccg
     7861 ctgcgggacg aagagcgccg tgacggcgtt gccccacgcg tagcctatgt ggcgcatgat
     7921 cgtgtagtcg tgcgggaggc tcgcgagcag cccgaagacg ccgcgctcgc ccgtcgcggc
     7981 ctccttggcg aaggcgagcc agccgaagcc cccgctcaaa agcacgagcg ccggggtcat
     8041 cagcgccgcc gcgcggtctc gcgtcagctc gagcgcccag cggtgcagca ggccgacgag
     8101 cgcgagcatc atcgcgaggt tctgccagaa gagcgcgccc tcaagagtag cgcccgcgcg
     8161 cacgaacatc gccgtcacga agtccacgac gaacgggtag gtcagccgcg cgcccgcgaa
     8221 ctccgggtgc tcgggcggga agttctcgcc gtgcgcgaag cccgtgatga cggcgacgtg
     8281 gaagggcagg tctcctatgt tcgtgtccgt cgcggtgaag acgccctcgc gcgtctcgta
     8341 catcgcgccg gcgaagacca tccagaacag aacagccgcc gcgaggtaaa agacgacgac
     8401 gcccgcgccg gccttcttcg tcgccccgac cgaccgccgc gcgtccgcca tgagacgttc
     8461 gcgccgttcc ggcttcagca gcaggagcag tggcgacgcg gccgcgacgc cggagagggc
     8521 gagcgccccg gccgtcatgc ccaagagcga ggcgagcgcg aagccgacga gcccgagcgc
     8581 ggcgagcccg acgcacacgc ccgcgcacag gcgcggccag agcggcgcgt cgcggtcgta
     8641 caggtatgta agcgtcgtcg cgcccgccac ggccgcgagc gccagcagaa aggcgaaggg
     8701 cataagagaa tcccgagacc gcgcgattat acgcgagaac cggcaggtgc tagaataccg
     8761 ccatccggct taccgaattt aactgctgag gtcttatgct tcgtgcgggc atagtcgggc
     8821 tgccgaacgt cggcaagtcc acgctcttca acgcgctgac ggcgcaggcg tcggcgctcg
     8881 ccgccaacta ccccttcgcc accatcgagc cgaacgtcgg cgtcgtcccc gtccccgacg
     8941 agcgccttga gccgctcgcc aaactggtga agacgacgac catcgtgcct gccacggtcg
     9001 agttcgtgga catcgccggc ctcgtgcgcg gggcctcgaa gggcgagggg ctcggcaacc
     9061 agttcctcgc caacatacgc gagacagacg ccgtcataca ggtcgtccgc tgcttcgagg
     9121 acgagcaggt catacacgtc gagggctcgg ttgacccgcg ccgcgacata gagaccatac
     9181 agatagagct tgcgctcgca gacctagcct ccgccgagcg gcggcgcgag cgcgcccaga
     9241 agacggcgaa tggcggcgac aaggccgcgc gcgacgagat gggtgtcata gacaaactgc
     9301 tcgccactct gtccgaaggc aggcccgcgc gcacggtcga gctcgacgag caggagcgcg
     9361 ccgtcgcgcg cggcctcttc ctcctgacga tgaagccgac catctacgcc gccaacgttg
     9421 acgaggccgc gcttgccgac cccgacgcga accctcacgt gcggacggtg cgcgagatag
     9481 ccgccgcgga aggcgccgag gtcgtcgtca tctgcgcgca gctcgaagcc gagctggtcg
     9541 cgctcgcgcc cgaggagcgc gccggctacc tgcgcgagct cggcctcgag tcgagcggcg
     9601 ttgacgagct gatcaggagc gcctaccggc tgctcggcct catgtccttc ctgacggccg
     9661 gcgagaagga ggtgcgcgca tggactatcc cccgcggcac ccgcgccccg caggccgcag
     9721 gcaccatcca caccgacatc gagcgcggct tcatacgcgc ggaggtcata tcctacgagg
     9781 agcttttgcg cgccggctcc tacgccgccg ctcgcgagca gggcctgctc cgcctcgaag
     9841 gcaaggacta cgtcatgcgc gagggtgacg tagtccactt ccgcttcaac gtctgatgcg
     9901 cgggaggaac gagaggccgc cacggcggcg ggccggcgcc ggggagggaa catcacgatg
     9961 caagacgcgc ccgttcagat agacctcggc agcgtggaga cgctcatagg caacctgcaa
    10021 ttcactttcg tcgtcagccc cgagggggac gcgcacctac agctttacgc gagcgacccc
    10081 tcgagcgcgg gcaaggccgg cgtgtctctg atgctcgacg cgggcggcta tgagcgactg
    10141 aaagcgatca ttaggggcgc cgacggcgtc atagaccgga tgataagcga ggggcggatc
    10201 aagaggatgg tgctgccgta ctgaacgggt ttctgcggcc gacgaaggga cgacgaaagg
    10261 agcgttatcg ttgaccactt ccctgcgcag aaagcgcgac gagcgggagc gcttgagccc
    10321 atcgcgggac gacgcgcgac cgggggccga gacgaagcgc ggcgcgcggg cctactcgtc
    10381 gccgcccgtg tacctgagca accgcccggc gctcagcctc ggtcgagggc ctgagactca
    10441 cgcagcgcgg aaggttcaat tcaagctggc ggtcagccgg gcgggcgacg tggccgagca
    10501 ggaggccgac cgcgccgccg agcgcgtcgt gagcgcgccg gaggcggaag gcgtcggccc
    10561 aaccgcgcaa gggagcggag cgcgtgagac gctgcggcgc agcagcgagg cgggggtgtc
    10621 actcggcgca ggcgacgcgc cggagagcgt ccgcggcgtg ttgagttcag ccgggcgaca
    10681 gctcgacgac ggcgcgcgcg ccttcatgga gccgcgcttc ggcatgagct tcggtcacgt
    10741 ccgcgtgcat gcggacgata gggccgccga ctccgcgcgc gatgtgggcg cgctcgccta
    10801 caccgtcggc cgcgacatag tgttcggcgc gggccagttc gcacccgaca cgcagagcgg
    10861 ccgccgcctg ctcgcgcacg agttggcgca cgtcgcgcag caagagccct cgcccactct
    10921 ccggcgccag cccatcaaca gcacgcccgt caacgtcagc gccgtcgccg ccgaggtcca
    10981 gaagctcgtg cgccccgaca agaaagagaa ggaggcgctc gaaaagctca acggcctcga
    11041 catgcgcgac ctgctcaacg tcgtcgagaa gctctacaac gacatcggcg accagaacga
    11101 cgaggggaag cgccgcgcct tcggcatact caacggcctg ctcgcgaccg tgccgaacga
    11161 cgagacgaag aacgtcaacg tctcgcgcct gcgcaccgcc ttcgacgccg cgccctcgcg
    11221 acacctgcgc aaccccacga gcgacaccga ccttggcacc acgcccacgc actctgcctc
    11281 gcgccgcgag gggcagggca aggccaaaca cgtcgcgcag ataggcgact ggggcgaaga
    11341 ccctctgggc aacacgtggg tcaggcactc cgacggcata cgcacctact tcggcacgac
    11401 gacgccgaag aaggagcgct cctccgcctg gctcggcaac aaccccggca acgccgacta
    11461 cgtgaagtcg ctgacgaagc gcgccatcag ctccttccgc tggggcaagg gcgcgcacca
    11521 cttcgctatc tacttcacgg ccgaggacgg cgcggccgac ctgcgcgacc gcatcaagac
    11581 cttccagacc gtgggcaacc acgtgcgcgc gcacctcggt aacaacccga aggagaataa
    11641 caacttcgag ttgtacatcg agcatataca gagcgccgcg cccggcgtga gcgagggtac
    11701 gcccacctcg gagtggacga ccgacgacgc gaagtggcgg cagctcctcg ccggctacaa
    11761 gaaggccgaa gggtggaagg agggcaaaac gctcacggcc gccaacgtcg gcacggtctc
    11821 ctccgacccg aaagacgcgc ccgcggtcga gtactacaag acgctgctcg gggcgccgta
    11881 agcggtctgc acttaaagtc gttttccgct tcaacgtctg aggaatttcc cgcctgactt
    11941 cgcctccctg cccgccaaaa ccattgacag atggcggagc gcggcattac cctgcgcgcc
    12001 taaagcctcg cgagccctta cgaccatccg agcggcggag actgaaagcc tccgggtcaa
    12061 atgctggctg cgcaaacaca cgacagggcg gacaagcccg caggcgccga gcccgagcgt
    12121 gccgacgccg cgccggccat gcggggcgct ccgctgctcc cttccctccg cccgacgccc
    12181 gcgccgctcc ccttagcact ccaacgcaaa ctgaccgtcg gcgaccccga cgacgcttac
    12241 gaagaagagg cggatagcgt ggccgagcgc gtgatgcgca tgccggatac gaccctcttc
    12301 ctgcgccgaa agtgcaactg cggcggggag tgcgaggagt gcggggcggg ggcgccgcgg
    12361 ctaatgcggc tcgcctccga ccgcgccggg gccggcgaga cagcgccccc ggtcgtgagc
    12421 gaggtgctcg catctcccgg ccggccgctc gacgcggcga cccgcgagtt catggagccg
    12481 aggctcgggt tagacctcgg gggcgtgcgc gtccacacgg gcgggcgggc cgccgagtcg
    12541 gcgcgggccg tgggagcgct ggcatacacg gtggggcgcg acatagtgtt cggcctcggg
    12601 cagtacgcgc ccgactccgg cgcgggccgc aagctcctcg cgcacgagct tgcgcacgtc
    12661 gcccagcagt ccggcggagc gcccgtcgtg cggcgcgcct gcgccccggg gcgtaaaggc
    12721 atcggcgcgc aggagcccgc ctccaagtgc gcgcccggag acccgctgtt cgtccacggg
    12781 ccgcggctca agttctgcac ggactccgac gagcttttgg aggggcagga caagctcttc
    12841 gacgactggc gcgcgaaggc ttcggcggcc tcgtccgtgg agctgcacgg caacgcctcg
    12901 acggaggggc cttccggtga ctacaaccta aagctttcgt gccaccgcgc cgccgcgatg
    12961 gccgtcaagc tggctagcgc cggcgtctcc acgcccgcga cgctgcacgc gcacggcgcc
    13021 acggccgttt acggcgacgc gctggagaac cgcaacgtcg tgctcgtcac gaaggcgccc
    13081 gtgaagaagg aggagccgaa gggagaggag aagcaggagc cgaaggaaaa agagaaggag
    13141 ccgccgaagg ggacgaacca gctcgacgac tgcaaggagg acgccggcca gcccgcgagc
    13201 atacgcgcgg ccgtctcgcg cgccttgggc gacctcgaca cggccatctc ggcgctcgcc
    13261 gcgcgcccgc ttaccgacca cgccaagaac tccctcttca tagtcctgcg cgcgagcgac
    13321 gacgccacgg ccgacaccat cctcgacagg ctgcggaaga ttcggaaggg gctcccctcc
    13381 gtcctcatca cctgcgacca gaaggacaag att
//
LOCUS       DASPKR010000066         2296 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_655191, whole genome shotgun sequence.
ACCESSION   DASPKR010000066 DASPKR010000000
VERSION     DASPKR010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_655191"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..835
                     /locus_tag="VD968_01995"
     CDS             <1..835
                     /locus_tag="VD968_01995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13193.1"
                     /translation="FFPRLRGQLAAALGALALRPALASSLALVVVGVAVGALWFGRST
                     RQPEGAPSPKEVASSAGSKVDKPGAPSPVETGTGAPTVVTPGAGDADNNAVAAVPRQS
                     ARPAANGRAVITNASAPAEAVAAPTGDVIEVLEEHPVRQDDPLLAILPKQLEDPDEII
                     AAAGPLGPEQKEVARHVEKAEALLRSFRNVNYSAPGEAGAEGLAYERRLSRKLLEENT
                     SLQLEAETAGDKETRRVLSALEPFLLDISNMREKPTREEVRSIKRRMEKQEIIAALQV
                     Y"
     gene            906..2243
                     /locus_tag="VD968_02000"
     CDS             906..2243
                     /locus_tag="VD968_02000"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HYE13194.1"
                     /translation="MSDAIKPARRTTGARPAAALLFAAFALALSAAPARAQDRELLNR
                     LFQSTSTTDAAMRVFEQGRDLLNEGKFDQAARAFDRFLKEYPAHENADAGLYWLAYSY
                     DKQSLFSQAEGALTLLMQKYPKTRWLKDAKLLDYKVKSKLGKRVSVPDDPDCQNAELK
                     IIALQSLCQTDKARCSALIGDVLKSSAPCSPPVKRAAIALLARYGGPEAVPPLMQMAR
                     SEPDEALRRYAIQGLGTTGDERGLDLLRELAMSTEYDDESPTDSAIHALANHESPRAV
                     GILGDVIANGRNLKARQHAVTLLAGRRGENVADELLRLYDAVPDLSVRQYVVAGLGRR
                     REPRVVNRLVEIARTAPQPELRKQAIHAIPNRNEEQDLDVLLSLYDSERDEQLKTYIL
                     GAFGRYDNQRAYQKLMQVVRSNSEPLERRKHAISLLSRSKDPAVLKFLEDMLK"
BASE COUNT          419 a          835 c          743 g          299 t
ORIGIN      
        1 cttcttcccg cggctgcgcg ggcaactcgc cgccgcgctc ggcgctctgg cgctcaggcc
       61 cgccctcgcc tcctcgctcg cgctcgtcgt cgtgggcgtc gccgtcggcg cgctctggtt
      121 cgggcgctcc actcgacaac cggagggcgc gccttcgcct aaagaagtcg ccagctccgc
      181 cggcagtaag gttgataagc ccggcgcgcc ctcgccggtc gaaacgggca cgggcgcccc
      241 gacggtcgtc actccgggcg cgggcgacgc ggataacaac gcggtcgccg cggttcctcg
      301 tcagtccgcg cggcccgcgg ctaacggccg ggcagtcata acgaatgcct ccgcgccggc
      361 agaagcggtc gcggcgccga cgggcgacgt gatagaggtg ctcgaagagc acccggtcag
      421 gcaggacgac ccgctgctgg cgattctgcc caagcagctc gaagaccccg acgagatcat
      481 cgccgccgcg gggccgctcg gccccgagca gaaggaggtc gcgcgccacg tcgagaaggc
      541 cgaggcgctt ctgcgctcgt tccgcaacgt caactactcc gccccgggcg aggccggggc
      601 cgaagggctg gcctacgagc ggaggctttc gaggaagctg ctcgaagaga acacctcctt
      661 gcagctcgag gccgagacgg ccggcgacaa ggagacgagg cgcgtcctta gcgcgctcga
      721 gcccttcctg ctggacattt cgaatatgcg cgagaagccg acgcgcgaag aggtgcgctc
      781 gatcaagagg cgcatggaga agcaggagat aatagccgcg ttgcaggttt actgatggag
      841 ggcagggccg acgccgacgg cttcgaccgg gaacgcaatt aaaggaagaa agcaggaata
      901 aaatcatgtc tgacgcaatc aaacccgcac gccgcaccac tggagcgagg cccgcggccg
      961 ccctactctt cgccgccttc gcgctcgcgc tctcggctgc gcccgcgcgc gcgcaagacc
     1021 gcgagctgct caaccgcctc ttccagagca cgtccaccac cgacgccgcc atgcgcgtct
     1081 tcgagcaggg gcgcgacctc ctcaacgagg gcaagtttga ccaggccgcc cgcgccttcg
     1141 accgcttcct caaggagtac ccggcgcacg agaacgccga cgccggcctc tactggctcg
     1201 cctactccta cgacaagcag agcctgttct cccaggccga gggcgcgctc acgctcctga
     1261 tgcagaagta cccgaagacg cgctggctga aggacgccaa gctgctcgac tacaaggtga
     1321 agtcgaagct gggcaagcgc gtctccgtgc cggacgaccc cgactgccag aacgccgagc
     1381 ttaagatcat cgccctacag agcctctgcc agacggacaa ggcgcgctgc tcggccctca
     1441 tcggcgacgt gctcaagtcg agcgcgccgt gctcgccgcc cgtcaagcgc gccgcaatcg
     1501 cgctgctcgc ccgctacggc ggccccgagg ccgtcccgcc gctcatgcag atggcgcgga
     1561 gcgagcccga cgaggcgctg cgccgctacg ccatacaggg cctgggcacc acgggcgacg
     1621 agcgcggcct ggacctgctg cgcgagctgg cgatgagcac cgagtacgac gacgagagcc
     1681 cgaccgactc ggccatacac gcgctcgcca accacgagag cccgcgcgcc gtaggcatcc
     1741 tcggcgacgt gatagcaaac ggccgaaacc tcaaggcccg tcagcacgcc gtcacgctgc
     1801 tggccgggcg ccgcggcgag aacgtcgccg acgagctgct ccgcctctac gacgccgtgc
     1861 cggacttgag cgtccgccag tacgtcgtcg cggggctggg gcgccgcagg gagccgcgcg
     1921 tcgtcaaccg cctcgtagag atcgcgcgca cggcgccaca gccggaactc cgcaagcagg
     1981 ccatacacgc cataccgaac cgcaacgagg agcaagacct cgacgtgctg ctctcgctct
     2041 acgactcgga gcgcgacgag cagttgaaga cctacatact cggcgccttc ggccgctacg
     2101 ataaccagcg ggcctaccag aagctcatgc aggttgtgcg ctctaattcg gagccgctcg
     2161 aacgccgcaa gcacgccata agcctcttga gccgcagcaa agaccccgcg gtcttgaagt
     2221 tcctcgaaga catgctcaag tagtaggccc cgcgcttaac cgccaggggc ggccgccctc
     2281 cggcggcgcg gccgcc
//
LOCUS       DASPKR010000067         2665 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_267299, whole genome shotgun sequence.
ACCESSION   DASPKR010000067 DASPKR010000000
VERSION     DASPKR010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2665)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2665
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267299"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..786
                     /locus_tag="VD968_02005"
     CDS             <1..786
                     /locus_tag="VD968_02005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13195.1"
                     /translation="AARIRELGVEPGRVRVAGNVKFDAEGAGEMPLTAELRERFGLGG
                     DRPLVLAASTHAPEERAVLEAFKQLKGQEGARLLLAPRHPERFAEVASLLEASGLRWA
                     RRSSEPLESDKTCDVILLDSIGELRAAYPLAEVVFVGGSVAPVGGHNVLEPAQAARCV
                     VTGAHTSNFTSVVGAMAERGALVQLPALSEEEAPAALAAALGELLADPEARRRMGERA
                     LAVLAENRGATARTIEMLKPILQSRPGPEGRGPLKDSLLTSDL"
     gene            797..1837
                     /gene="lpxK"
                     /locus_tag="VD968_02010"
     CDS             797..1837
                     /gene="lpxK"
                     /locus_tag="VD968_02010"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: protein motif:HMM:NF014645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HYE13196.1"
                     /translation="MSLALAPFSLLYGAAVRARLALYSRGLLARDDVGAPVVSVGNLT
                     AGGTGKTPLVAWVARALAADGRRVCVLSRGHGRRDVSSRVVVSDGARVMAGVEEGGDE
                     PVMLAEELLGAAAVVCQADRAAAARWAREELGSEVFVLDDGFQHLRLARALDIVTVDG
                     TAPWGGGRLLPRGRLREPASGLRRAGCVVVTRSDMADDLEGLRAEVSVLTGGRAAVFA
                     SRVRVKGLRALGGRGGEVVDSDAAPRSVAALCAVGNPAAFFEQVRRAGLDLVLERAFP
                     DHHKYTQGELDEVSREAEAVGARAVLTTAKDAVKLRELSPPLPFYVVETDLEFDDEAA
                     LLRLVREAAGGR"
     gene            complement(1845..>2665)
                     /locus_tag="VD968_02015"
     CDS             complement(1845..>2665)
                     /locus_tag="VD968_02015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13197.1"
                     /translation="AGELYDALASAAAEGEPLTAARASAAAAETDRIVVPTAAEGAAR
                     HTAADDADEATVVSAGYATGGAAAMRTEELPPPVAPLPDSGFNPWRIAVPAIAALLIV
                     FAVVFAFQRRGASGEEQTGQPPLTADPNSQPVQTLTPPTGQAEHNLTPLVTPTPGAPA
                     GAGDLPATADPGSFAEANASTTPTPEGEGQADGQQTGEENANAGEGDKPKATPTPARA
                     IRLPNINASPEGGDDPPPPPRPTPKKPQPEASKPPAETKSGPSVDSSGPSAPAP"
BASE COUNT          298 a          892 c         1051 g          424 t
ORIGIN      
        1 gccgcgcgca tacgtgagct tggcgtcgag cccggccgcg tgcgcgtcgc agggaacgtc
       61 aagttcgacg cggaaggtgc gggcgagatg ccgctcacgg cggagttgcg cgagaggttc
      121 gggctgggcg gcgaccgccc gctcgtgctt gccgctagca cgcacgcgcc cgaagagcgc
      181 gccgtgctcg aagccttcaa gcaattaaag ggtcaagaag gggcgcgtct gctcctcgct
      241 ccgcgacacc cggagcggtt cgcggaggtc gcgtcgctgc tggaggcgtc gggcctgcgt
      301 tgggcgcggc gctcttcgga gccgctcgaa tccgacaaga cttgcgacgt gattctgctc
      361 gacagcatag gcgagcttcg cgccgcctac ccgctcgccg aggtcgtctt cgtcggcggg
      421 agcgtcgcgc ccgtcggcgg ccataacgtc ttggagccgg cgcaggccgc ccggtgcgtc
      481 gtcaccggcg cgcacacgtc gaacttcact tcggtcgtcg gcgcgatggc ggagcgcgga
      541 gcgctcgtgc aactccccgc gctctcggag gaggaggcgc ccgcagcgct cgcggccgcg
      601 ctcggcgaat tgcttgccga cccagaagcc cggcgccgca tgggcgagcg cgcgctcgcc
      661 gtgctcgctg agaaccgcgg cgcgactgcg cgcaccatcg agatgctcaa accgattctt
      721 cagagcaggc cggggccgga gggccgcggg cctttgaagg actctctgct cacctcagac
      781 ctctaacccc tgacctatga gtctcgcgct cgcaccgttc agcctgctct acggcgcggc
      841 cgtgcgggcg cggctggcgc tctactcccg cggcttgctc gcgcgcgatg acgtgggcgc
      901 gcccgtcgta agcgtcggca acctgacggc gggcgggacg ggcaagacgc cgctcgtcgc
      961 gtgggtggcc cgcgctctcg cggccgacgg caggcgcgtc tgcgtgctct cgcgcggcca
     1021 cgggcgcagg gacgttagca gtcgcgtcgt cgtctctgac ggggcgcgtg tgatggcggg
     1081 cgtagaagag ggcggcgacg agcctgtgat gttggccgag gaacttctgg gcgctgccgc
     1141 ggtcgtgtgc caagccgacc gcgcggcggc tgcgcgctgg gcgcgagaag agttgggctc
     1201 ggaggtcttc gtgctcgacg acggcttcca gcacctgcgg ctcgcgcgcg cgctcgacat
     1261 cgtgacggtg gacgggacgg cgccgtgggg cggggggcgg ctcctcccgc gcgggcgtct
     1321 gcgcgagccc gcgagcgggt tgaggcgcgc gggctgcgtc gtcgtcactc gctcggacat
     1381 ggccgacgac ttggaaggct tacgcgcgga agtgtcggtg ctgacgggcg ggcgcgcggc
     1441 ggtcttcgcc tcgcgagtgc gcgtgaaggg cttgcgcgcg ctcggcgggc gcggcggcga
     1501 agttgttgac agcgacgctg cgccgaggtc ggtcgcggcc ctctgcgccg tcggcaaccc
     1561 ggccgcgttc ttcgagcagg tgcggcgcgc agggttagac ctcgtgctcg agcgcgcctt
     1621 tcctgaccat cacaaataca cgcaaggcga attggacgaa gtctcgcgcg aggcagaagc
     1681 ggtcggcgcg cgcgccgtgc tcacgacggc gaaggatgcc gtcaagctgc gcgagctttc
     1741 ccctcccctg cccttttacg tggtcgagac tgatttggag tttgacgacg aggccgcgct
     1801 gctgcgtctt gtccgcgagg cggcgggtgg ccgctgaagt gttcttaagg cgcgggggcg
     1861 ctcgggccgg acgagtcaac cgaggggcct gacttcgttt cggcgggcgg cttcgatgct
     1921 tcgggctgcg gcttcttcgg cgtgggccgg ggcggggggg gcgggtcgtc gccgccctcg
     1981 gggctggcgt tgatgttcgg caggcggatg gcgcgcgcgg gcgtgggcgt cgccttcggc
     2041 ttgtcgccct cgccggcgtt cgcgttctct tcgcccgtct gctggccgtc ggcctggcct
     2101 tcgccctcgg gcgtcggcgt cgtcgaggcg ttggcctcgg cgaagctgcc ggggtctgcg
     2161 gtcgcgggga ggtcgccggc gcctgcgggc gcgccgggcg tgggcgtcac cagcggcgta
     2221 aggttgtgct cggcctgtcc cgtgggcggc gtcagggtct gtacgggctg gctgttgggg
     2281 tcggccgtga gcggcggctg cccggtctgc tcttcgccgg aggcgccgcg acgctggaag
     2341 gcgaagacga ccgcgaagac tatcagcagc gcagctatcg ccggcaccgc gatccgccac
     2401 gggttgaagc ccgagtcggg cagcggcgcg accggcggcg gcagctcttc cgtgcgcatc
     2461 gcggcggcgc cgcccgtcgc gtagcccgcg ctcacgacgg tcgcctcgtc ggcgtcgtcg
     2521 gcggccgtgt gtcgcgccgc gccctcggcg gcggtcggga ctacgatgcg gtctgtctcg
     2581 gccgcggccg ccgaggcgcg cgcggccgtc aggggctcgc cctcggcggc ggcagaggcg
     2641 agcgcgtcgt agagctcgcc cgcat
//
LOCUS       DASPKR010000068         7824 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1432177, whole genome shotgun sequence.
ACCESSION   DASPKR010000068 DASPKR010000000
VERSION     DASPKR010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7824)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7824
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1432177"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1336
                     /locus_tag="VD968_02020"
     CDS             <1..1336
                     /locus_tag="VD968_02020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13198.1"
                     /translation="YDPQKPSENFPAPWRGGPWGMGDITNYMTRAAFELLKHAADNRE
                     RWLRRFYEVGREAVRPRRPGELQGFRILPSENSGQLLDILRRGGVEMETMSRREPGRR
                     RARGVMRGGGRAGADWQELDTFVPLAQPYGAFAKALLERQNYPDLRDASGNPLPPYDV
                     TAHTLPLLMGVEVEPVYQPVRRGTLLRDESAEGGRAPTRPDQSRRPRVALYRSHVPSM
                     DEGWTRWVFEDNGISSASITDAEVRAGRLREKYDAVVIPDQSPRAILEGHRKGAMPDE
                     FTGGLGKDGVKALREFVAGGGTLVCLNRASNFAIEQFDLPLRDVTEGLRRTEFYVPGS
                     ILRTVLDTTHPLSKGMPRESIAWVEDSPVFEIKSDPLALPRVKIIARYPHSGSPLLSG
                     WLLGEERLRGRAALVEAGLGEGRVILFGFRPQYRAQSLATYPLLFNALAPSS"
     gene            complement(1365..1502)
                     /locus_tag="VD968_02025"
     CDS             complement(1365..1502)
                     /locus_tag="VD968_02025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13199.1"
                     /translation="MSPGQAAVGAAGEARQACEGAAVAAFKWLLDIVYIFFAVSMPAR
                     S"
     gene            complement(1577..1837)
                     /locus_tag="VD968_02030"
                     /pseudo
     CDS             complement(1577..1837)
                     /locus_tag="VD968_02030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183618.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
     gene            complement(1920..2462)
                     /locus_tag="VD968_02035"
     CDS             complement(1920..2462)
                     /locus_tag="VD968_02035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13200.1"
                     /translation="MTGRRRFISLAGAAVVLACLTPALAARRSQRGAGLEVSVPAGTE
                     VLIRARQDIFSSTVLEGETIDFFEVAEDVTVGGRVVIRRGARALARVVVAKRPRRLGR
                     GGKLEILVEQTVTVDGQWALLRGEPLKEKGRPRVAEMAGLAVFMGPGGAMLEGKNARI
                     KAGAVAKTLTAEEMSVAIRP"
     gene            complement(2466..2897)
                     /locus_tag="VD968_02040"
     CDS             complement(2466..2897)
                     /locus_tag="VD968_02040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13201.1"
                     /translation="MRSASVSLLLCAALLAAGARRAECRQSGAQAQPAQAAKADDAAE
                     KVRRKVEKIRIGGRITVKTKDGKKFHGAVRSIGETGFDIVEVDLHQVVTFDYADVKKA
                     QSGYGEKNLFGQRPDPKRTAIVGAAALVGLLTLIVLSIPRT"
     gene            complement(3079..4446)
                     /locus_tag="VD968_02045"
     CDS             complement(3079..4446)
                     /locus_tag="VD968_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009256459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HYE13202.1"
                     /translation="MEYTQAEILQTVRMTEMEHLDVRTVTLGLSLRDCARDTIEATAD
                     AAREKIEATAARLVPTVNEIGEEFGLSVANKRISITPVALIANRARAPRELLTLARAI
                     DEAAGVVGVDFVGGYSALVHKGMTRSESVFLDSIPEALAGTARLCSSLNVATTRAGVN
                     MDAVRRTGELIKEMAELTGDRGGLACAKFVCFANAVEDNPFMAGAFHGVGEPEAVINV
                     GVSGPGVVNHAVRHAPAGAPLDEVAELIKKLSFKLARAGELVGREAARRLGLRFGIID
                     LSLAPTPTPGDSVAEIIEALGFERAGTHGTTAALALLTDAVKKGGAMASSSVGGMSGA
                     FIPVSEDAGMIEAARLGALSLDKLEAWTSVCSVGIDMVAVPGSTSAATIAAIIADEMA
                     VGVMNNKTTAVRIIPAPGRDVGDTVEFGGLLGSAPIMPVNQFSSEAFIRRGGRIPAPI
                     HSLRN"
     gene            complement(4462..5016)
                     /locus_tag="VD968_02050"
     CDS             complement(4462..5016)
                     /locus_tag="VD968_02050"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HYE13203.1"
                     /translation="MFPEISRRCLSCGASVRPSARFCPQCGEEFGEAEQARTGEGDGA
                     RGASAPPNELPPPPPTREAEAPRFSAPPAREFHSFLQSVEGQPAGAAEPLTATTTPTP
                     RPAAQQPPADAQPAGQQAGEGVRGRVARVKENIRPRVERMRDEALVVLEETPDDSGLR
                     FIIIAAALFLVFLFFLFLSTTVLR"
     gene            complement(5073..5534)
                     /locus_tag="VD968_02055"
     CDS             complement(5073..5534)
                     /locus_tag="VD968_02055"
                     /inference="COORDINATES: protein motif:HMM:NF001220.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HYE13204.1"
                     /translation="MANEELIYRITRAVYGRLGAGADEREVEALVMDIYRAIEPIAAG
                     DGGAAPQGAGAVRGGGEGRSDRLIVSVFGVDNPGIVAGVSQILAEAGCSIIDINQTVV
                     QGKFAMVIVADITRARESAAALKERFREQGNRLGVRIYAQREDLFNAMHRI"
     gene            complement(5629..5964)
                     /locus_tag="VD968_02060"
     CDS             complement(5629..5964)
                     /locus_tag="VD968_02060"
                     /inference="COORDINATES: protein motif:HMM:NF015289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HYE13205.1"
                     /translation="MFLGKVVGTVWSTKKTPDLEGVRFLIVHPIDLDKEPTRNIVVVA
                     DRLGAGPGEVVMCAYGKAARSAVGNQEMSIEAAVVGIVDRMDMQEELARSDELVESSR
                     ELRARDNGR"
     gene            complement(6012..>7824)
                     /locus_tag="VD968_02065"
     CDS             complement(6012..>7824)
                     /locus_tag="VD968_02065"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYE13206.1"
                     /translation="VCGAMAAAALRDAARLGAMAVEETGYGIPDDKREKNRFAAEDVW
                     NYFKGLRTVGVVNESAEVMEIASPRGVVAGIIPSTNPTSTAIFKILIAIKSRNSIVLS
                     PHPSAAKCIAETARLMREAGVKEGLPPEAVGCMTSATIEGTEALMKHKLTAVILATGG
                     IGLVRAAYSSGKPAFGVGPGNVPVFVERTADIPLAVQNILTGKTFDNGTICASEQAVV
                     ADAPVAAQVRREFEAQGAHFLSASEADQLARVVATAQRALNPAIVGKSVEVIAKMAGL
                     SVPAGTRCLMAEVGGVGRDHPLSMEKLSPILAFYVEDGLERGAARCFEVLSYGGMGHT
                     AGIHTRSRDVARAFGTEMPASRVVVNTPTTHGAIGFSTALPPSMTLGCGSWGGNVTSD
                     NISPWHLMDIKRVAFETRAVPSKRPAARAAQQQPAAAPAAQRQPALAGSGGGVSRDEI
                     AKIVDRFLSARQPQQTGSPAAEPTGGPLPVAQPHAFVQQDVDIEPHRVSPSGGVAPQP
                     EAAPTAEAHAGNGGRQQSSQAQPAPPAQAPAASDGGKPATPAPAQTNGKRAVEFVCED
                     DVRRAIQKGEKIYVGARTIITPAARDMGEAAEVFAKA"
BASE COUNT         1161 a         2719 c         2675 g         1269 t
ORIGIN      
        1 ctacgacccg cagaagccgt cggagaattt ccccgccccc tggcgcggcg gcccgtgggg
       61 catgggcgac ataacgaact acatgacgcg cgcggccttc gagcttctca agcacgccgc
      121 cgacaaccgc gagcgctggc tccggcgctt ttacgaagtc ggccgcgagg ccgtccgacc
      181 acgccgcccc ggcgagctac agggcttccg catactccct tcggagaaca gcggccaact
      241 gctcgacata ctccgaaggg gcggggtgga gatggaaacc atgtcgcgga gggagcccgg
      301 ccggcgcagg gcgcgcggtg tgatgcgcgg aggcggcagg gccggggcag actggcagga
      361 gcttgatacg ttcgtccctt tagcgcagcc ctacggcgcc ttcgccaaag ccctgctcga
      421 aaggcaaaac taccccgacc tgcgcgacgc ctccggcaac ccgctcccgc cctacgacgt
      481 gacggcgcac acgctgccgc tgcttatggg cgtagaggtc gagccggtct atcagcccgt
      541 caggcgcggc actctcttgc gggacgagtc ggccgagggc ggccgcgcgc ccacgcgccc
      601 cgaccagtcc cgccggcccc gcgtcgcgct ctacaggtct cacgtcccct cgatggacga
      661 gggctggacg cggtgggtct tcgaggataa cgggattagt tccgcctcta tcaccgacgc
      721 ggaggtgcgc gccgggcgtc tgcgtgagaa gtacgacgcc gtcgtcatcc ccgaccagtc
      781 gccgcgagcg attctggaag gccaccggaa gggggcgatg ccggacgagt tcacgggggg
      841 cttagggaag gatggcgtca aagccttgcg cgagttcgtc gcgggcggcg ggacgctggt
      901 gtgcctcaac cgggcgtcta acttcgccat cgagcagttc gatctgcctc tgcgcgacgt
      961 gaccgagggc ctccggcgca cggagttcta cgtccccggc tctatcctgc gcacggtact
     1021 cgacacgacg caccctctgt cgaagggcat gccgcgcgag tcaatcgcat gggtcgagga
     1081 ctcgcccgtc ttcgagataa agagcgaccc gctggcgcta ccgcgcgtca agataatcgc
     1141 gcgctacccg cactcgggca gcccgctact gtcgggttgg ttgctgggcg aagagcgcct
     1201 gcgcgggcgc gcggcgctcg tggaggcggg cctcggcgag gggcgcgtta tactcttcgg
     1261 cttccgcccg cagtaccgcg cgcagtcgct agccacctat cctctgctct tcaacgcgct
     1321 cgcgccgtca agctagcggt cgaagactac gacgggcatg actgctacga gcgagccggc
     1381 atagacacgg cgaagaagat atagacgatg tcgagcagcc acttgaaggc cgcgaccgcc
     1441 gcgccctcgc acgcttggcg cgcctcgcct gccgccccga cggctgcctg ccccggcgac
     1501 atcactcgcc ttcgccgcgc ttcgacctga ccgagccgga aatcttcttg cgcgtcgtct
     1561 cgcccgtctc cagcacgggt atcccttcgt caacttctgc gtgcggtcgc ggtatgacgt
     1621 gcgtggtgac gacctcgccg acccggcgcg cggcggccgc gccagcgtcc acggcggcgc
     1681 gcaccgcccc gacttcgccg cgcactatcg ccgtcaccag ccccgcgtca atcttctcgt
     1741 accccaccag ccgaacgttc gccgccttaa ccatcgcgtc cgcggcctct atcatcgcca
     1801 cgaggccgcg gcactccacc atcccgagag cttccatgac tgagcccttc ccctcccgcg
     1861 atataaaaaa agaaacgccc gcgaaggcgt gaagcataac acaggacggg gcgcgccgct
     1921 cagggcctta tggcgacgga catctcttcg gccgtgagcg ttttcgcgac ggcgccggcc
     1981 ttgattctcg cattcttgcc ttcgagcatc gcgccccccg ggcccatgaa caccgcgagg
     2041 ccggccatct cggcaacgcg cgggcgcccc ttctccttaa gcggctcgcc ccggagcaag
     2101 gcccactgac cgtcaaccgt caccgtctgc tcgaccagga tttcgagctt cccgcccctc
     2161 ccgaggcggc gcggccgctt agccaccacg acgcgcgcca gagcgcgcgc gccgcgccgg
     2221 atgacgacgc ggcccccgac ggtcacgtcc tcggcgacct cgaagaagtc tatggtctcg
     2281 ccctcgagca ccgtgctgct gaagatgtcc tgccgggccc ttatgaggac ttctgtgccg
     2341 gcggggacgc tcacctcaag gcccgcgccc cgctgcgagc ggcgagcggc gagagccggc
     2401 gtgaggcagg caaggacgac ggccgcgccg gcgagactga tgaagcgacg acggcccgtc
     2461 attgtctaag tcctcgggat ggacaggacg atgagcgtta agaggccgac aagcgccgcg
     2521 gcgccgacga tggccgtgcg ctttgggtcg gggcgctggc cgaagaggtt cttctcgccg
     2581 tagcccgact gcgccttctt cacgtcggcg tagtcgaacg tcacgacctg gtgtaggtca
     2641 acctcgacta tgtcgaagcc cgtctcgccg atgctcctta ccgcgccgtg gaacttctta
     2701 ccgtctttgg tcttcacggt tatgcggccg ccgatcctta tcttctcgac cttgcgcctg
     2761 accttctcgg ccgcgtcgtc agccttcgcc gcctgcgccg gctgtgcctg cgcgcccgac
     2821 tgccggcact cggccctgcg cgcgcccgcc gccaggagcg ccgcgcagag caggagcgaa
     2881 acactcgcgc ttctcataac ctgaaagtct cctctcttcg gtttcggggc gtgctgaggc
     2941 tttcgtccct gcgctcgtga ctgcaacgcg ggtgccgcgc ggcccgtgca gcgaacttcc
     3001 cgagaagggc gcgcccggcg ggcccagcgg cgcagcaaaa ggaggacagt tggaggggcg
     3061 gcgggtttgt tgagcccgct agttcctgag cgagtgtata ggggcgggta tgcggccgcc
     3121 gcggcgtatg aaggcttcgg aggagaactg gttaacgggc atgatggggg cgctgcccag
     3181 caggccgccg aactctacgg tgtcgcctac gtcccggccc ggcgcgggga ttatgcgcac
     3241 ggcggtcgtc ttgttgttca tcacgccgac ggccatctcg tcggcgatga tggcggctat
     3301 ggtcgccgcg ctcgtcgagc cggggacggc caccatgtcg atgccaacgg agcagacgct
     3361 agtccaggct tcgagcttgt cgagcgagag ggcgcctagg cgcgcggcct ctatcatccc
     3421 ggcgtcctcc gagacgggga tgaaggcgcc gctcatcccg cccacggaac tggaagccat
     3481 cgcgccgccc ttcttgacgg cgtccgtgag gagcgcgagc gcggccgtcg tcccgtgcgt
     3541 gccggcgcgc tcgaagccga gcgcctcgat tatctctgcg acggagtcgc ccggcgtcgg
     3601 cgtcggcgcg agagacagat caatgatgcc gaagcgcagg cccaaccggc gcgcggcctc
     3661 gcggccgacc agctcgccgg cgcgcgccag cttgaaggag agcttcttaa tgagctcggc
     3721 cacctcgtcg agcggcgcgc ccgcgggcgc gtggcggacg gcgtggttca cgacgccggg
     3781 gcctgagacg cccacgttga tgacggcctc cggctcgccg acgccgtgga acgcgccggc
     3841 catgaacggg ttgtcctcga cggcgttggc gaagcagacg aacttcgcgc aggccaggcc
     3901 ccctcggtcg cccgtaagct ccgccatctc ctttatcaac tcgccagtgc ggcgcacggc
     3961 gtccatgttg acgcccgcgc gcgtggtcgc cacgttaagc gacgagcaga ggcgggccgt
     4021 gccggcgagc gcctccggga tggagtcgag gaagacagat tcggagcgcg tcatcccctt
     4081 gtggacgagc gcggagtagc cgccgacgaa gtcaacgccg acgacgccgg ccgcttcgtc
     4141 aatcgcgcgg gcgagcgtca gaagctcgcg cggcgcgcgc gcgcggttgg cgatgagcgc
     4201 gacgggcgtg atcgagatgc gcttgttggc gacgctcagg ccgaactcct cgcctatctc
     4261 gttgaccgtg gggaccaggc gcgctgccgt cgcctctatc ttctcgcggg cggcgtcggc
     4321 cgtcgcctct atggtgtcgc gcgcgcagtc tcgcagagag agcccgagcg tgaccgtgcg
     4381 cacgtcgagg tgctccatct cggtcatgcg gacggtctgg aggatttcgg cctgtgtgta
     4441 ttccataagc gggcccgggc gctacctcag aaccgtggtg ctcaggaaga ggaagaagag
     4501 gaagacgaga aagagggcgg cggcgatgat gatgaagcgc aggcccgagt cgtccggcgt
     4561 ctcttcgagg acgacgagcg cctcgtcgcg catcctctcg acgcgcggcc ggatgttttc
     4621 tttgacgcgc gcgacgcggc cccgcacgcc ctcgcccgcc tgctgccccg cgggctgcgc
     4681 gtctgccggg ggctgctgag ccgccggccg cggagtaggc gttgtcgtcg cggtcagtgg
     4741 ctccgcggcg cccgccggct ggccctccac ggactgaagg aaggaatgaa actccctcgc
     4801 cggcggcgcg gagaagcgcg gcgcctccgc ctcgcgcgtc gggggcggcg gcgggagctc
     4861 gttcggcggc gccgacgcgc cgcgcgctcc gtcgccttcg cccgtgcgcg cctgctcggc
     4921 ctcgccgaac tcctcgccgc actgcgggca gaagcgcgcg ctcgggcgca ccgacgcgcc
     4981 gcacgacagg cacctgcggg atatctctgg gaacatagga gcagaggccg gaggtcagtt
     5041 aaaagacctc ttctgacctt tggcgtctga catcagattc tgtgcatggc gttgaagagg
     5101 tcttcgcgct gcgcgtagat gcgcacgccg agccggttgc cctgctcgcg gaagcgctcc
     5161 ttgagcgccg cggccgactc gcgcgcgcgc gtgatgtcgg cgacgatgac catcgcgaac
     5221 ttgccctgca cgaccgtctg gtttatgtca atgatgctgc aaccggcctc ggcgagaatc
     5281 tgcgagacgc cggccactat gccggggttg tcaacgccga agacggagac gatgaggcga
     5341 tctgagcggc cctcgccgcc gccgcgcacg gcccccgcgc cctgcggggc cgcgccgccg
     5401 tcgcccgcgg caatcggctc tatcgcgcgg tagatgtcca tcacgagcgc ctcgacctcg
     5461 cgctcgtcgg cgcccgcccc cagacgcccg tacaccgccc gcgtgatgcg gtagatcagc
     5521 tcttcgttag ccatgctaag acagatgcta gatgtcaggt gctagatgct ggtttagagc
     5581 gccgccctat taaccagcat ctagcacctg acatctagca tctacttttt accttccgtt
     5641 gtcgcgggcg cgcagctcgc gcgacgactc gacaagttcg tccgagcgcg caagctcctc
     5701 ctgcatgtcc atccggtcaa ctattccgac gacggccgcc tctattgaca tctcctggtt
     5761 gccgacggcc gagcgcgccg ccttcccgta ggcgcacatc acgacctcgc ccggcccggc
     5821 gcccaggcgg tcggccacga cgacgatgtt gcgcgtcggc tccttgtcca ggtcaatcgg
     5881 gtggacgatg aggaacctca cgccctccag gtcgggcgtc ttcttcgttg accagaccgt
     5941 gccgacgact ttccctaaga acataagaaa tcggaagtcg ggggttcagc ttttagtctg
     6001 gccccgcgac ttcatgcctt cgcgaatacc tcggcggcct cgcccatgtc gcgcgcggcg
     6061 ggggtgatga tggtgcgggc gccgacgtaa atcttctcgc ccttctgtat ggcgcggcgc
     6121 acgtcgtcct cgcagacgaa ctcgacggcg cgcttgccgt tcgtctgcgc tggcgcgggc
     6181 gtcgcgggct tgccgccgtc actcgcggcc ggcgcctggg ccgggggcgc gggctgagct
     6241 tgagaagact gctggcggcc gccgttgccc gcgtgcgcct cggcggtggg cgcggcctcg
     6301 ggctgcggcg ccactccgcc cgatggcgag acgcggtgcg gctctatgtc aacgtcctgc
     6361 tgcacgaagg cgtgcggctg cgcgacgggg agcgggccgc ccgtgggctc ggccgcgggc
     6421 gagcccgtct gctgcggctg gcgcgcgctc aggaagcggt caactatctt ggctatctcg
     6481 tcccggctca cgccgccgcc cgagcccgcg agcgcgggct ggcgctgagc tgcgggggca
     6541 gccgcgggct gctgctgtgc ggcgcgggcg gccgggcgct tcgacggcac ggcgcgtgtc
     6601 tcgaaggcga cgcgtttgat gtccatcagg tgccacggag agatgttgtc ggacgtgacg
     6661 ttgccgcccc aggagccgca gcccagagtc attgagggcg ggagcgccgt cgagaaccct
     6721 atggcgccgt gcgtggtcgg cgtgttgacg acgacgcgcg aggcgggcat ctccgtgccg
     6781 aaggcgcgcg cgacgtcgcg cgagcgcgtg tgaatgccgg cggtgtggcc catgccgccg
     6841 taggagagaa cctcgaagca gcgcgcggcg ccgcgctcca acccgtcctc tacgtagaag
     6901 gcgagaattg gcgagagctt ctccatcgag agcgggtggt cgcgcccgac gccgcccacc
     6961 tcggccataa ggcagcgcgt ccccgccggt acgcttaagc ctgccatctt tgcgataact
     7021 tccacggact tcccgactat cgcggggttt aaggcgcgct gcgccgtcgc gacgactctg
     7081 gcgagctggt cggcctccga ggcggagagg aagtgcgcgc cctgcgcctc aaactcccgc
     7141 ctgacctgcg cggccacggg cgcgtcggcg acgacggcct gctccgaggc gcagatcgtc
     7201 ccgttgtcga aggtcttgcc cgtcaggatg ttctgcacgg cgagcgggat gtcggccgtg
     7261 cgctcgacga agacggggac gttgccgggg cctacgccga aggcgggctt cccagaggag
     7321 taggccgcgc gtacgagccc gatgccgccc gtggcgagta tgacggcggt cagcttgtgc
     7381 ttcatcaagg cttcggtgcc ttcgatggtc gcgctcgtca tgcagccgac ggcctcgggc
     7441 ggcaagcctt ctttcacgcc cgcctcgcgc atcagccgcg ccgtctcggc tatgcacttc
     7501 gcggccgagg ggtgcggcga gagcactatc gagttgcgcg acttgatggc gatgaggatt
     7561 ttgaagatgg ccgtggacgt ggggttggtc gaggggatga tgccggcgac gacgccgcgc
     7621 ggcgaggcta tctccatcac ctcggccgac tcgttaacga cgccgacggt gcggagcccc
     7681 ttgaaataat tccaaacgtc ctcggcggcg aagcggttct tctcgcgctt gtcgtcgggg
     7741 atgccgtagc ccgtctcctc gacggccatc gcgccgagcc gggcggcgtc gcgcaacgcc
     7801 gccgcggcca tcgccccgca gacg
//
LOCUS       DASPKR010000069         2686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1302697, whole genome shotgun sequence.
ACCESSION   DASPKR010000069 DASPKR010000000
VERSION     DASPKR010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1302697"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..601)
                     /locus_tag="VD968_02070"
     CDS             complement(<1..601)
                     /locus_tag="VD968_02070"
                     /inference="COORDINATES: protein motif:HMM:NF013197.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13207.1"
                     /translation="MIKTVEWTAEGVRMIDQRALPNEEKYLMLRSCEEVADAIKQMVV
                     RGAPAIGVSAAMGIALGASQAVGTSVEDLEQDFDYFCDVMSRTRPTAVNLFWAIERMR
                     ERFRRAKAEGADADSVKRQLIEEAQAIFRDDIESNRALGRFGGELIPDGATVLTHCNA
                     GALATAGDYGTALGVVRGARDMGKRVAVLADETRPFLQGA"
     gene            complement(770..1201)
                     /locus_tag="VD968_02075"
     CDS             complement(770..1201)
                     /locus_tag="VD968_02075"
                     /inference="COORDINATES: protein motif:HMM:NF025683.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4383 domain-containing protein"
                     /protein_id="HYE13208.1"
                     /translation="MAKTICKLLGVVFILVGILGFLAPGMLGMHLSLAHNLVHIISGA
                     LALYFGFAGTLSGARLFCIVFGVVYLLLGIVGFLAGGAGSHTVAGVPTGHHGAGDSSL
                     LAVLPGSLELATMDHIVHVLLGIIFLIGGFMTKADLDRAVD"
     gene            1382..1660
                     /locus_tag="VD968_02080"
     CDS             1382..1660
                     /locus_tag="VD968_02080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13209.1"
                     /translation="MLYSASNRGSNPNPCEVSKSMTPLVGPKRVTPEEAWGLVEAGLR
                     PVFIDTRNPRHWAQSDVQIPGSLRIWRAELEDRIGEVPRGRPLVTYCA"
     gene            1868..>2686
                     /gene="gatB"
                     /locus_tag="VD968_02085"
     CDS             1868..>2686
                     /gene="gatB"
                     /locus_tag="VD968_02085"
                     /inference="COORDINATES: protein motif:HMM:NF004012.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HYE13210.1"
                     /translation="MKSGWEAVIGLEIHAQLSTESKIFCGCSTRFGDEPNSNTCPVCL
                     GLPGSLPVLNRRAVELGARAALALGLRVNEVSVFARKNYFYPDLPKGYQISQYDRPFS
                     SDGRLEIMTAERDEGGHARDWRPMQIRITRLHLEEDAGKNVHEGLPETNRFSYIDLNR
                     AGTPLAEIVTEPDFRTSWEAYDYVNHVRRALQWVGASDADMEKGNLRCEANVSVRRKG
                     EGFGTKVELKNLNSVRFMQRAIEFEIERQIALIESGGKVSQETRLWDERAGETRV"
BASE COUNT          473 a          873 c          913 g          427 t
ORIGIN      
        1 gcgcgccctg taggaagggg cgcgtctcgt cggcgaggac ggcgacacgc ttgcccatgt
       61 cgcgcgcgcc gcgcacgacg ccgagggccg tgccgtagtc gcccgcggtg gcgagcgcgc
      121 ccgcgttgca gtgcgtcagc acggtcgcgc cgtcgggtat cagctcgccc ccgaagcggc
      181 ccagcgctcg gttcgactcg atgtcatcgc ggaagatggc ctgagcctct tcgattagct
      241 gccgcttgac tgagtcggcg tcggcgccct cggccttcgc gcggcggaag cgctcgcgca
      301 tgcgctcgat ggcccagaag aggttgacgg ccgtggggcg cgtgcggctc atcacgtcgc
      361 agaagtagtc gaagtcctgc tctaaatctt ccacggaagt cccgacggcc tgcgaggccc
      421 cgagcgctat ccccatcgcg gcagagacgc ctatcgcggg cgcgccgcgc acgaccatct
      481 gcttgatggc atcggccacc tcctcgcacg acctgagcat caggtacttc tcttcgttcg
      541 gcagcgcgcg ctggtcaatc atgcgcacgc cctcggccgt ccattcgacg gtcttgatca
      601 tgtcggtaaa agtctcctcg gtgtttatga gagccgggct tgattataga ggctcggggg
      661 cggctaagga cagcacagag gcgggccgcc cgcggccggc cctactttga gccggcggcg
      721 tcggcccgcc ccttgagctt cgcggcggag ttgcgcgccc tcgcccgcgt taatctaccg
      781 cccggtcgag gtcggccttc gtcatgaagc cgccgatgag gaagatgatc ccgagcagca
      841 cgtggacgat gtgatccatc gtggccagtt cgagcgagcc gggcagcacg gccagcaggc
      901 tcgaatcgcc cgcgccgtgg tggcccgtgg ggacgcccgc gaccgtgtgc gagccggcgc
      961 cgcccgcgag gaagccgacg atgccgagca gcagatagac gacgccgaag acgatgcaga
     1021 agaggcgcgc gcccgagagt gtccccgcga agccgaagta gagggcgagg gcgcccgaga
     1081 tgatgtgcac gaggttgtgc gcgaggctca ggtgcatgcc gagcatgccg ggggccagga
     1141 agcccagtat ccccacaagg atgaacacga cacccaagag tttgcagatt gtcttcgcca
     1201 tagcttttgt ttctcctcct cgggaaggta aggtggataa acacggtcgg ggcaccccgc
     1261 cgcgcgaggg ggccgtcacc ccgccccgcc tctgtaaaat gttcaaggtc gcggcattgt
     1321 acaacacaaa gcggggcttt gagccaacaa aatcgcgccc gttgagggcg aagtttggcg
     1381 ggtgctatac tcggcgtcga accgcggcag taacccgaac ccttgcgagg tctcgaagag
     1441 catgacgcct ctggtcgggc cgaagcgggt cacgcccgag gaggcctggg ggctcgtcga
     1501 ggcgggcctg cgccccgtct tcatagacac gcgcaacccg cgccactggg cgcagagcga
     1561 cgtgcagata ccgggcagct tacgcatctg gcgcgcagaa ctggaagata ggattggcga
     1621 agtgccgcgc ggccggcccc tcgtcaccta ctgcgcctga cactacgagc actcgagcgc
     1681 ccgtgcggcg ctcacgctcg aagagtacga ttacacagac atacacgtcc tcgtcggcgg
     1741 catcaacgcc tggcgcgacc gcgggctgcc gctggaaaag aaggcggaag gcagtaagca
     1801 gtaggcgggc tctaaggcgc acgcgcgaga tgacacggct ccttctgctt tctgcctgct
     1861 taaatttatg aaatctggct gggaggccgt catcggcctt gagattcacg cacagctgag
     1921 caccgagtcg aagattttct gcgggtgctc gacgcgcttc ggcgacgagc cgaactcgaa
     1981 cacctgcccg gtctgtctgg ggctgcccgg ctccctgccg gtgctcaacc gccgggcggt
     2041 cgagttgggc gcgcgggcgg cgctcgctct cggccttcgc gtcaacgagg tgtcggtctt
     2101 cgcgcgcaag aactacttct accccgacct gccgaagggc taccagattt cgcagtacga
     2161 ccgcccgttc tcttccgacg gccgcctcga aatcatgacg gccgagcgcg acgagggcgg
     2221 ccacgcgcgc gactggcggc cgatgcagat tcgcatcact cgcctgcacc tcgaagagga
     2281 cgccggcaag aacgtccacg agggcctgcc cgagacgaac cgcttctcct acattgacct
     2341 caaccgggcg gggacgccgc tcgccgagat cgtcaccgag ccggacttcc gcacctcttg
     2401 ggaggcttac gactacgtca accacgtccg ccgcgctttg cagtgggtcg gcgcgtcgga
     2461 cgcggacatg gagaagggga acctgcgctg cgaggccaac gtctccgtgc gcaggaaggg
     2521 cgaggggttc gggacgaagg tcgagctgaa gaacctcaac tcggtgcgct tcatgcagcg
     2581 cgccatcgag ttcgagatag agcggcagat tgcgctcatc gagtcgggcg ggaaggtctc
     2641 gcaggagacg cgcctgtggg acgagcgcgc gggcgagacg cgcgtg
//
LOCUS       DASPKR010000070         9257 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_138444, whole genome shotgun sequence.
ACCESSION   DASPKR010000070 DASPKR010000000
VERSION     DASPKR010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9257)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9257
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138444"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            190..1374
                     /locus_tag="VD968_02090"
     CDS             190..1374
                     /locus_tag="VD968_02090"
                     /inference="COORDINATES: protein motif:HMM:NF039257.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tectonin domain-containing protein"
                     /protein_id="HYE13211.1"
                     /translation="MKNAVTKILFAFLLTAMCGSAIFAQTAERINFEKEGSMSLVWEQ
                     MMPKGSTKTYVFRGEKDQTVSFALIEDTGKGKLNFDNFGTVDVSVIGRNQNFKLTEAR
                     DYYFTVINESNKQTSFRISISVTDAEGNPITLPIRNTISATHWKKMPSLGETPLLLAI
                     GAGNAVWAVDIKNKVYKLDNDKWTKTDFGGLYDNSTISKIVVDPDGYPWVLADTLIFR
                     LVNNRWTEMPGRANDIFISPLGLVWIVGASDSTGASDNNPILQWNETTRKWLKTKDPA
                     ATQIADSGGADAAYLLSLRNDGSVWFYGSPDNAHATKGRWKKMHGMYGTQLSIGGDGT
                     AWLVGDTEGNVEEGFVLYRLDNASNTWKKMEGKCLYLAVDMHGQAWIITRDGNIYQYI
                     GK"
     gene            1394..1921
                     /locus_tag="VD968_02095"
     CDS             1394..1921
                     /locus_tag="VD968_02095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13212.1"
                     /translation="MKLLLLTVTLLTAFVSACTVDTATPANNGVSNSNAPTSSNAAAV
                     KTEKTPAAGAENATSTNNNKSLESGQNSERVQFAAGKTETTLTRTIPANNSIDFVLNA
                     QSRQRMQYSVIYDDGSDTDIEVFLSEPGSQDISKTSDANQNNEFIIKKTGDHRITVQN
                     KTGNKVTVQFGVVIN"
     gene            1959..2306
                     /locus_tag="VD968_02100"
     CDS             1959..2306
                     /locus_tag="VD968_02100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13213.1"
                     /translation="MPPSVISGEQSDDLIVLFVSFEVYPSIPLSDRQAGSIGSLAWLL
                     LSAGTHKSFLLPLSSVQRILAYQLPFFSTTLPFLTPGIFNLPYPPFNPPFGFKSKRRI
                     KAGAHTVEFFRKI"
     gene            2305..2370
                     /locus_tag="VD968_02105"
     tRNA            2305..2370
                     /locus_tag="VD968_02105"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2353..2355,aa:Ser,seq:cga)
     gene            2649..6434
                     /locus_tag="VD968_02110"
     CDS             2649..6434
                     /locus_tag="VD968_02110"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HYE13214.1"
                     /translation="MRVAPAPISAYFFAVVFLLVSGSSAAAQTPGQLLLVTSYNNDRV
                     VRFDPVSGAFEGDFITPGGGGLDGPYGITYGPDGGLYVSGHNSDNVLRYDAQNGAFTR
                     AFVPAGSGGLDGPTDIVFGPDGHLYVTDYNNDRILRYNGATGAFIGTFVAAGSGGLDG
                     PNGFTFGPDGNLYVSSHNTDQVLRYNGTTGAFIDVFITAGSGGLDGPIGVVFHSGVLY
                     VASYVNQAVRAYDASTGAHLSSPFSLNSPTGLLVDSGGLLYMASFADHNVRRHQIGVG
                     SLSTLSGGLNAPVFMALTPTPPCTKAPVGMVSWWPGNQNGRDLMGNNYAALKNGATVA
                     PAKVAKGFSLDGVNDFAEAPDNPSLDITGAISVDAWVKPDTTAGNHIILSKYDSPASQ
                     QSYAFGVDNGQVHFTVYQTGDASVYRGAQTTVSIPAGQFSHVAATFNPSTQAIKIYIN
                     GVEAPAAPLGGSANVASIFDSTAPLRIGAVKNSGTGLLAFDGIIDEVELFARELTADE
                     VLAVWNAGGEGKCRECAPPPSGMLGWWPGDGSAHDIVGGHDGTLNNATFANGMVEQAF
                     DFTGLPGVVVPDAPELNPQTFTIDAWVTRAPFSCGVCAAFVAAKSGSDGNRGFELDFR
                     GDGSINFYLNGGTTGGHVPSTVLITDNGFHHLAATYDGQTMKLYIDGVLNNQKAVSTV
                     INYEAGRPLIIGGREFSSTTTYPGLIDELELFDRALSAEEIKSIYNAGAAGKCRACAP
                     PPTEMLSWWPAEGHTFDIQGTNHAALRNGATYVTGKVGQAFSLDGADDFVEVPNNAAL
                     NPTTITVDGWFYVRQTPSGEFYLVSKYENFAGWILRLGPDLVPAFSVHSLPSNHAAAT
                     SSVPVPLNAWVHLAGTYDGTTARIYVNGDETGSAALAGGYTPSNTPLRIGTATWFNGG
                     FTNGLVDEVEIFSRALDASEIRAIADAGRTGKCRVDLSVTKLDSPDPVLAGGEITYTI
                     AAKNLSDIVATNVTVTDQLPAGVSYVSDTGGCAHDAPNNRLTCAVGGLDPGQTFSFTV
                     TVKTVSTVNAVNLVTVDGDEPDSFPSNNRRKAETRVVNLSRFTLSDDRTTGGCQTAQL
                     ITGRVTLSSAAPAGGATVLLLSSNPSAASVPASVIVPEGQKSATFDVTPGAVSSPAFV
                     TFNAKLDSPQNPAFVLIQTLTVLPMRVRSLTLTPPTVASGEVSTGMATLSCAPAAQVT
                     VSLSSSKLSVGQVPPTLVIDAGDPTGLFNVTTGAPGRATIGATLNGATRNAGLTVTP"
     gene            6958..>9257
                     /locus_tag="VD968_02115"
     CDS             6958..>9257
                     /locus_tag="VD968_02115"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HYE13215.1"
                     /translation="MEIVEGQRFPKQFVHTLLAIGAGAVLLTLFRLPVAHLNYPLFLL
                     ALLAVHVSSRFDSACADDVWHFPAAPAFIFLAMFVFDGEAAVLLAASCAVGSSLLGRK
                     GLWAVGFDAALAALSAFVVVWTLRLTSGSIPALAADPLSLESLYAVGFGVLALSLASA
                     SVVAYGGSYRIDQPVWRNLAVTLFWKAVGNSAAGASALLAAAGVQFVGLGASLTVGAL
                     AAMLALVLPSVLRRDAKPHHSAAEGPREKAPSEVDRFRSAFDYAAIGMALVSTEGRWL
                     QVNHSLCEILGYTEKELLATDFLSVTHPDDLPTALSNISQLLKGKVQASQMEKRYINK
                     QGEEVWVHWSVSMVRDQYTKSIHLIFQIQDITDRKVAEQQLHHDAFHDALTGLPNRAL
                     FMDHLKLSIARAKRNQAALYAVLYLDLDRFKVINDSLGHTIGDQLLVGIADRLKKNLR
                     PGDTVARLGGDEFTVLIEDISDEKEAVQVAERIQKELSVPFTLSGREVFTTVSMGIAP
                     SSTGYERAEDILRDADTAMYRAKSLGKARYEIFDKAMHARAINLLQMETDMRRALERN
                     EFILHYQPIVALADFRLRGFEALVRWQHPERGFISPMDFIPVAEETGMIVPLGEWVLN
                     EACKQMRRWQKSFPSDPPLFMSVNLSSKQFSQNTLISKVAVILQETGIDPHCVKLEIT
                     ESVVMENIETATEMLRQLRALGVQLAIDDFGTGYSSLSYLHRFPIDTLKIDRSFVTRM
                     SENNENTEIVRTIVVLAQNLGMDVVA"
BASE COUNT         1853 a         3057 c         2667 g         1680 t
ORIGIN      
        1 cgattgcggt ttccgatccg agcggaaaaa atgttgacga ctacgacgcg agctgccacg
       61 gcaattttaa tttgccgaaa acgaaaaaag gcgactatcg aatcgtcatt accgaatgca
      121 aaaaagccga gccgtggaaa ggccctttca aaattaaggt gagcgcaacc gacaattaag
      181 gagagcgtca tgaaaaatgc agtcacaaaa attctgtttg cattcctcct gacggcgatg
      241 tgcggttcgg cgattttcgc tcagaccgcc gaacggataa attttgagaa agaaggttcg
      301 atgtcgctgg tttgggaaca gatgatgccg aaaggctcga cgaaaaccta cgttttccgt
      361 ggcgagaaag atcagacggt ctcctttgct ttgattgaag acacgggcaa aggcaagttg
      421 aatttcgaca atttcgggac ggttgacgtg agcgtcatcg gccgaaatca aaatttcaaa
      481 ttgactgaag ctcgcgacta ctattttacg gtcatcaacg agtcaaacaa acagacgagt
      541 ttcaggattt ccatcagcgt aacggatgcg gagggaaatc cgataacact gccgattaga
      601 aacaccatct cggcaacgca ttggaaaaaa atgccgagtc tgggcgagac tcctttgctg
      661 ctcgctatcg gcgccggaaa tgcggtctgg gcggttgaca tcaagaacaa ggtttacaaa
      721 ctggacaatg acaaatggac gaagacggat ttcggcggtc tgtacgacaa ctcgaccatc
      781 agtaagatcg tcgttgatcc cgacggttat ccgtgggtgc ttgccgacac gctgattttt
      841 cgactcgtca acaatcgctg gacggaaatg cccggccgcg ccaacgacat tttcatttcg
      901 cccttgggtc tcgtctggat cgttggcgcg agcgacagca ccggcgcaag cgacaacaac
      961 ccgatccttc agtggaacga gacgacgaga aagtggctta aaacgaaaga ccctgcggcg
     1021 acgcaaattg ccgacagcgg cggcgccgat gccgcatatt tgttgtcact ccgtaacgat
     1081 ggaagcgtct ggttttacgg ttcgcccgat aacgcgcacg cgactaaggg aagatggaag
     1141 aagatgcacg gcatgtacgg cacgcagctc agcatcggcg gagacggcac ggcttggctt
     1201 gtcggcgaca ctgaaggcaa cgtggaagaa ggatttgttc tttatcgttt agataacgct
     1261 tccaatacct ggaagaagat ggagggcaaa tgcctgtatc tcgccgttga catgcacggt
     1321 caagcgtgga tcatcacccg cgacggcaac atctatcaat acattggcaa gtaaaccgga
     1381 aaagaggaaa accatgaaac tattactttt aactgtaact ctgcttactg catttgtgtc
     1441 ggcttgcacc gtcgatacgg caacgcccgc caataacggc gtttcaaact ctaatgctcc
     1501 gaccagtagt aatgccgcgg cagtgaaaac cgaaaaaaca ccggcggcag gcgccgagaa
     1561 tgcgacttca acaaacaata acaaatcgct ggagtcagga caaaattcgg aaagagtcca
     1621 attcgcggca ggaaaaaccg agacgacttt gacgcgcacc attcctgcca acaattcgat
     1681 agactttgtt ttgaatgctc aaagcaggca gagaatgcag tatagcgtga tctacgacga
     1741 cggttcggac accgacatcg aagtattttt aagcgaaccc ggatcgcagg acatctccaa
     1801 aacttcagac gcgaatcaaa acaatgaatt cataatcaaa aaaacgggtg accatcgaat
     1861 tacggttcaa aacaaaaccg gaaacaaagt aaccgttcaa ttcggtgtag taatcaatta
     1921 accaacttca taaaaatata ctttgacggc aattcttttt gccgccatcc gtcatctctg
     1981 gcgagcaatc tgacgatttg attgttttgt tcgtcagctt tgaagtgtat ccctctatcc
     2041 cgctttccga ccggcaggct ggaagtatcg gctcgcttgc gtggctcttg ttatccgcag
     2101 gtacccataa atctttcctt ttgccgcttt cttctgtcca gcggattctg gcctaccagt
     2161 taccattttt ttcaactaca cttccctttc taactccagg cattttcaat ctcccttatc
     2221 ccccttttaa tccccctttc ggttttaaat cgaagagaag gattaaagcg ggcgctcata
     2281 ctgttgagtt tttcaggaag atttgagaga aaatctaact tgggctggct tttaaccagc
     2341 ggatcgcagg ttcgagccct gctcggctca tcaacccttt cgataagtaa aaggccactc
     2401 cgaagagtgg ccttttctga agccgaggcc cgccgcgcgc gccttcccca cgtcacctct
     2461 cacgcggcgc ccgaagctct acgcccgccg ataaattcct tgacgcgccg gcccggcccg
     2521 ttataatccc gtcacgcgca cacgcgaggc caggccgaaa acggaggcga ccgcgcctac
     2581 cgtctgcctc gcggcctaca ctccttgaat cccagagcag ccgttcttac acatcccgag
     2641 gtgaatagat gagagtcgcg cccgccccta tctctgccta cttcttcgcc gtcgtcttcc
     2701 tcttggtctc gggcagcagc gccgctgcgc agacgcccgg ccaactcctg ctcgtcacaa
     2761 gctacaacaa cgaccgcgtc gtgcgcttcg acccggtgag cggcgccttc gagggcgact
     2821 tcatcacgcc cggcggcggc gggctcgacg gcccctacgg catcacctac ggcccggacg
     2881 gggggctcta cgtctccggc cacaacagcg acaacgtcct gcgctacgac gcgcagaacg
     2941 gcgccttcac gcgcgcgttc gtgccggcgg gctcgggcgg gctcgacggg ccgaccgaca
     3001 tagtcttcgg ccccgacggc cacctctacg tcacggacta taacaacgac cgcatcctgc
     3061 gttacaacgg cgcgaccggc gccttcatcg gcaccttcgt cgccgcgggc tcgggcgggc
     3121 tcgacggccc caacggcttc acgttcgggc cggacgggaa cctctacgtt tcgagccaca
     3181 acactgacca ggtgctgcgc tacaacggca cgaccggcgc cttcattgac gtgttcatca
     3241 cggccggctc gggcggcctc gacggcccca ttggggttgt cttccactcg ggcgtgctct
     3301 acgtcgcttc atacgtcaac caggccgtca gggcctacga cgcctcgacc ggcgcgcacc
     3361 tcagcagccc cttctcttta aacagcccca cgggccttct ggttgactcc ggcggcctcc
     3421 tctacatggc cagctttgcg gatcacaacg tcaggcggca ccagatcggg gtcggttccc
     3481 tcagcacgct cagcggcggg ctgaacgccc cggtcttcat ggcgctcaca cctacgccgc
     3541 cctgcacgaa ggcgcccgtc gggatggtct cctggtggcc cggcaaccag aacggccgcg
     3601 acctaatggg gaacaattac gccgcgctga agaacggcgc gacggtcgcc ccggccaagg
     3661 tcgcgaaggg cttcagcctc gacggcgtga acgacttcgc cgaggccccc gacaacccct
     3721 cgctcgacat caccggggcc ataagcgttg acgcgtgggt gaagcccgac acgacggccg
     3781 gcaatcatat catcctctct aagtatgact cgcccgccag ccagcagagc tacgccttcg
     3841 gcgttgacaa cgggcaagtc cacttcaccg tctatcagac gggcgacgcc tccgtctatc
     3901 gcggggcgca gacgaccgtc tccataccgg cggggcagtt ctcgcacgtc gccgccacct
     3961 tcaacccttc aacccaggcg ataaagattt acataaacgg cgtggaggcg ccggccgcgc
     4021 cgctgggcgg ctcggcgaac gtggcctcga tcttcgacag cacggcgccg ctgcgcatcg
     4081 gcgcggtcaa gaactcgggc acgggcctcc tcgccttcga cggcatcatt gacgaggtcg
     4141 agctcttcgc ccgcgagttg acggccgacg aggtgctcgc cgtctggaac gcgggcggcg
     4201 agggcaagtg ccgcgagtgc gcccctccgc cttcgggcat gctggggtgg tggcccggtg
     4261 acggcagcgc gcacgacatc gtgggcggcc acgacggcac gctgaacaac gcgacgtttg
     4321 ccaacggcat ggtcgagcag gcgttcgatt tcacgggcct gcccggggtc gtcgtgcccg
     4381 acgccccgga gcttaacccg cagactttca ccattgacgc ctgggtcacg cgcgcgccct
     4441 tctcgtgcgg cgtctgcgcg gccttcgtcg ccgccaaatc gggctccgac ggcaaccgcg
     4501 gcttcgagtt ggacttcagg ggggacggct ccatcaattt ctatctcaac ggcggcacca
     4561 ccggcgggca cgtcccgagc accgtcctca tcacggacaa cggcttccac catctcgccg
     4621 cgacctacga cgggcagacg atgaagctat acattgacgg cgtcctcaac aaccagaagg
     4681 cggtcagcac cgtgatcaac tacgaggcgg ggaggcccct catcatcggc gggcgcgagt
     4741 tcagctcgac gaccacttac cccggcctga tagacgagct cgagctgttc gaccgcgcgc
     4801 tctcggccga ggaaatcaaa tccatctaca acgccggcgc ggccggcaag tgccgcgcgt
     4861 gcgcgccgcc gcccacggag atgctctcgt ggtggcctgc cgaggggcac acgtttgaca
     4921 tacaggggac gaaccacgcc gcgctccgca acggcgcgac ctacgtgacc ggcaaggtcg
     4981 ggcaagcgtt cagcctggac ggcgcggacg acttcgtgga ggtgccgaat aacgcagcgc
     5041 tcaacccgac aacgataacc gttgacgggt ggttctacgt caggcagacg ccctccggcg
     5101 agttttatct ggtcagcaag tacgagaatt tcgccggatg gattctgcgc ctcggcccag
     5161 accttgtgcc agccttctcc gtccacagcc tgccgagcaa ccacgcggcc gcgacttcgt
     5221 ccgtccccgt accgctgaat gcgtgggtgc acctcgcggg gacttacgac ggcacgaccg
     5281 ctcgcatata cgtgaacggc gatgagacgg gcagcgcggc gctggccggc ggctacacgc
     5341 cgtcaaatac gccgctgcgg atcggcacgg ccacgtggtt caacggcggg ttcaccaacg
     5401 gcctcgttga cgaggtggaa atcttctcac gcgcgctcga cgcctcggag attcgcgcca
     5461 ttgcggacgc aggccgcacg ggcaagtgcc gcgttgacct ctccgtcacg aagctcgact
     5521 cgcccgaccc cgtcctcgcg ggcggggaga ttacctacac catcgccgcc aagaacctga
     5581 gcgacatcgt ggcgacgaac gtcacggtca cagaccagct ccccgccggg gtctcttacg
     5641 tctccgacac gggcggctgc gcgcacgacg cgccgaacaa ccgcctgacc tgtgccgtcg
     5701 gcgggctcga ccccggccag accttctcct tcacggtcac ggtgaagacc gtctcgacgg
     5761 tgaacgccgt caacctcgtc acggtggacg gcgacgagcc ggattcgttc ccgtcgaaca
     5821 accggcggaa ggccgagacg cgcgtggtca acctctcgcg cttcacgctc tcggacgaca
     5881 ggacgaccgg cgggtgccag accgcgcagt tgataacggg gagggtgacc ctgtcgagcg
     5941 ccgccccggc cggcggcgcg accgtgctgt tgctgagcag taacccttcg gcggcgtcgg
     6001 tgccggcgag cgtcatcgtg ccggaggggc agaagagcgc gaccttcgac gtgacgcccg
     6061 gcgcggtcag ctcgcccgcc ttcgtgacct tcaacgctaa gctcgactcg ccgcagaacc
     6121 cggccttcgt gctaatccag acgctgacgg tgttgcccat gcgcgtaagg tcgctgacac
     6181 tgaccccgcc gacggtggcg agcggcgagg tttcgaccgg catggcgacg ctgtcctgcg
     6241 cgccggccgc gcaggtgaca gtctcgctgt cgagcagcaa gctgtcggtc gggcaggtgc
     6301 cgccgaccct cgtgattgac gcgggcgacc cgacggggct tttcaacgtc acgaccggcg
     6361 cgccgggcag ggcgaccatc ggcgcgacgc tcaacggcgc gacccgcaac gccggcctga
     6421 ccgtcacgcc ctagacttaa acaggccgcg cgaatgtcgg cggtgagcgc gaaggtgagg
     6481 ccgtcaagtc tcaccttcgc gctcaccgcc ttttttccgg ggccggcgcc ggccattttc
     6541 gactacgaaa aacctggaac tcggcccgcc ctgttccagt ttttttttcg gtttacagcc
     6601 gggatgatta tgctaggatg agtttgcggc ggccgcgccg aagtggtaga gagcgcgagc
     6661 ccgagcgctc atttcaagcc ccgaaccgag ccccaccttg cagttcacac cgtcgtacag
     6721 actctccttt cgccccgccc atcagattgc ctgattagtt ttttgtcata ctgaccgcgc
     6781 gcggcgaagc tcccccgaaa gcctccacgg cggcgccgct ttccgaaggt tatttgagcc
     6841 tccttccctt aaggcctgtg gcacccggct tgtaatcgaa tcgccgaagc ggggccgccg
     6901 ccgcaacggc ccgacggggc ctcctacgaa aacccaacac agacggcctg acccatcatg
     6961 gaaatagttg aaggacagcg cttccctaag cagttcgtgc atacgctcct ggcaatcggg
     7021 gcgggcgcgg ttctcctcac gctcttccgc ctgcccgtcg cacacctgaa ctacccgctc
     7081 ttcctgctcg ccctcctggc cgttcacgtc tcctcgcgct tcgactccgc gtgcgccgac
     7141 gacgtctggc acttccccgc cgcccccgcc ttcatcttcc tcgccatgtt cgtcttcgac
     7201 ggcgaggcgg ccgtgctgct cgccgcgtcg tgcgcggtcg gctcctctct gctgggccgc
     7261 aaggggctct gggctgtcgg cttcgacgcc gcgctcgcgg ccctgtcggc cttcgtcgtc
     7321 gtctggacgc tcaggctcac ctcgggctcg ataccggccc tggccgccga cccgttatcg
     7381 ctcgagtctc tctacgccgt cggcttcggc gtgctcgcac tctcgctcgc gagcgcgtcg
     7441 gtcgtcgcat acggcggctc gtacaggatt gaccagccgg tctggcgcaa cctggccgtg
     7501 actctcttct ggaaggcggt cgggaactct gccgccggcg cctccgcgct gctggccgcg
     7561 gccggcgtgc agttcgtcgg gctcggagct tctctgaccg taggcgcgct ggccgcgatg
     7621 ctggcgctcg tgctgcccag cgtcctccgg cgcgacgcca agccgcacca ctcggccgcc
     7681 gaggggccgc gcgagaaggc gccgagcgag gttgaccgct tccgcagcgc attcgactac
     7741 gcagcgatag ggatggcgct agtctcgacc gaggggcgct ggcttcaggt caaccactcg
     7801 ctctgcgaga tactcggcta cacggagaag gagctgctcg ccacagactt cctgtcggtc
     7861 acgcacccgg acgacctgcc cacggcgctc tcgaacataa gccagctcct caagggcaag
     7921 gtgcaggcgt cgcagatgga gaagcgctac atcaacaagc agggcgagga ggtctgggtt
     7981 cactggagcg tctcgatggt gcgcgaccag tacacgaaga gcatccacct catattccag
     8041 attcaggaca tcaccgaccg caaggtcgcc gagcagcagc tccaccacga cgccttccac
     8101 gacgcgctca ccggcctccc gaaccgcgcg ctcttcatgg atcacctcaa gctctcaatc
     8161 gcgcgcgcca agcgcaacca ggcggccctc tacgccgtgc tctacctcga cctcgatcgc
     8221 ttcaaggtca taaacgactc tctgggccac accatcggcg accagctcct cgtaggcatc
     8281 gccgaccggc tcaagaagaa cctgcggccc ggcgacaccg tcgccagact gggcggcgac
     8341 gagttcaccg tgctcatcga ggacatctcg gacgagaagg aggccgtgca ggtcgccgag
     8401 cgcatccaga aggagctgtc agtccccttc accctgagcg gccgcgaggt cttcacgacc
     8461 gtcagcatgg gcatcgcgcc cagctcaacc ggctacgagc gcgccgagga catactgcgc
     8521 gacgcggaca ccgccatgta ccgcgccaag tctctgggca aggcgcgcta cgagatattc
     8581 gacaaggcca tgcacgcgcg cgccatcaac ctcctccaga tggagaccga catgcgccgc
     8641 gcgctcgagc ggaacgagtt catactccac taccagccca tcgtcgccct cgccgacttc
     8701 cgcctgcgcg gcttcgaggc gctggtgcgc tggcagcacc cggagcgcgg cttcatctcg
     8761 ccgatggact tcatacccgt cgccgaagag accggcatga tagtcccgct gggcgagtgg
     8821 gtcttgaacg aggcgtgcaa gcagatgcgg cgctggcaga agtctttccc ttcagacccg
     8881 ccgctgttta tgagcgtcaa cctttcgagc aagcagttca gccagaacac gctcatcagc
     8941 aaggtcgccg tcatactcca ggagaccggc attgacccgc actgcgtcaa gctggagata
     9001 acggagtcgg tggtgatgga gaacatagag accgccaccg agatgctccg ccagctccgc
     9061 gccctcggcg tccagctcgc catagacgac ttcggcaccg gctacagctc gctctcctac
     9121 ctccaccgct tccccataga caccctcaag atagaccgct ccttcgtaac ccgcatgagc
     9181 gagaacaacg agaacaccga gatagtcagg acgatagtcg tgctggcgca gaacctcggc
     9241 atggacgtcg tggccga
//
LOCUS       DASPKR010000071         2906 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1819965, whole genome shotgun sequence.
ACCESSION   DASPKR010000071 DASPKR010000000
VERSION     DASPKR010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2906)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2906
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1819965"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..935)
                     /locus_tag="VD968_02120"
     CDS             complement(<1..935)
                     /locus_tag="VD968_02120"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE13216.1"
                     /translation="MSTEQFDVTIIGAGPGGYVAAVRGAQLGLKVALVEKDKRLGGTC
                     GLRGCIPTKALLMSAHYYEKAQKDLADFGIKVSDVQLAFADVQKRKDKVVMKNAKGVE
                     YLMKKNKVTTFGGAARLALPGKVEVTGADGKKQTISTKNIIIATGSVVRPIPGFETDG
                     ERVVNSDHILELKEVPKSLIVMGSGAVGVEFASIYARFGSEVTVVELLPRLMPLEDEE
                     ISKELEKSFRKHGIKSLTGTKLEKVEKTEGGVRVTGKDAKGGDVTLEAAMLLVAVGRM
                     PYLEGLGIEGTKIKVERGSIQVDEFCRTGEPGVYA"
     gene            complement(1108..1530)
                     /locus_tag="VD968_02125"
     CDS             complement(1108..1530)
                     /locus_tag="VD968_02125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13217.1"
                     /translation="MLRNLTAALLAAACCLLAAGCGGKEQAPGVEQLLGRLNPFTEEL
                     VRKVESAQNPSEGVSEAQKHLGAGKAALAEEIARLKRSPEFQRDAEARRKLLEAEVEG
                     TTRVSGLRTKYMDAAMSDPAFKAKLDRLVSDYQELFKD"
     gene            1612..1989
                     /locus_tag="VD968_02130"
     CDS             1612..1989
                     /locus_tag="VD968_02130"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HYE13218.1"
                     /translation="MKHSEGFLKLVEDARTRVREVTVEETLERLKAGARLVDVREDSE
                     WEAGHAAGAEHMGRGVIERDIEARVPDKSAELILYCGGGYRSALAADNLQRMGYREVF
                     SMAGGWKAWKDAGAPVREGRAGE"
     gene            2064..>2906
                     /locus_tag="VD968_02135"
     CDS             2064..>2906
                     /locus_tag="VD968_02135"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13219.1"
                     /translation="MKFDGAGRGESLFKRALPAAALVAACCAPAYARQEGGPMAVPSI
                     GKVMERRMEMSARSVDETLRRRFEEGKLSSTYPTDAAKARAGTMRAVSPEERKALALN
                     EKGISYFAKNKHDDAIKQYREAIRIYPNLAAAHNNLGSAQFALGSYKEAAESFARAAQ
                     IDATYGEAFFNLALAYIKLGSEKEANDALVAATRAYLTAGDEQFDSGEHKEAEASFKA
                     VLRIDPGYLPAHFRLGLVYNAAQRFEEAAESFRLVLRSQPKIAEVHENLAEALYGLRK
                     YEEAA"
BASE COUNT          483 a          962 c          953 g          508 t
ORIGIN      
        1 atggcataga cgccgggctc gcccgtgcgg cagaactcgt caacctgaat cgagccgcgc
       61 tcgaccttta tcttcgtccc ctcaatcccc aagccttcca gatacggcat gcgcccgacg
      121 gcgacgagca gcatcgcggc ctccaacgtc acgtcgccgc cctttgcgtc cttgcccgtg
      181 acgcgcacgc ccccttcggt cttctcgacc ttctccagct tcgtccccgt gagcgacttg
      241 atgccgtgct tgcggaaaga cttctcaagc tctttggaga tctcctcgtc ttcgagcggc
      301 atgagccgcg gcagaagctc taccacggtc acctccgagc cgaagcgcgc gtagatggag
      361 gcgaactcga cgccgacggc gcccgagccc atgacgatga gggacttcgg cacctctttc
      421 agttcgagta tgtggtcgga gttgacgacg cgctcgccgt cggtctcgaa gccggggatg
      481 gggcggacga ctgagcccgt ggcgatgatg atgttcttcg tgctgatcgt ctgcttcttg
      541 ccgtcggcgc cggtgacttc taccttgccg ggcagcgcga gccgtgcggc gccgccgaag
      601 gtcgtcacct tgttcttctt catgaggtac tcgacgccct tcgcgttctt catgacgacc
      661 ttatccttgc gcttctgcac gtcggcgaag gcgagctgca cgtccgagac tttgatgccg
      721 aagtcggcca ggtccttctg cgccttctcg tagtagtgcg ccgacatcag cagcgccttc
      781 gtcgggatgc agccgcgcag gccgcaggtg ccgcccagtc gcttgtcctt ttcgacgagc
      841 gcgaccttca accccaactg cgcgccgcgc acggccgcca cgtaaccgcc ggggccggcc
      901 cctatgatag tcacgtcgaa ctgttccgtt gacaatttcc ctctcctgtt aaaggctttg
      961 gcgcgcggcc ccggacggcg ctctctcccc tgacggaggg gccgcccgcc ctccgaacta
     1021 cggccgcgcg cctgtgttgg aaagctgttt caaagcggca ttatagcccc tcggccgggt
     1081 ttactccacc ggggccgcgc ggcgctccta gtccttgaaa agctcctggt agtcggacac
     1141 cagcctgtct agcttcgcct tgaacgccgg gtcggacatc gccgcgtcca tgtacttcgt
     1201 gcgcaggccg cttacgcgcg tcgtgccttc gacttcggct tcgagaagct tccttctggc
     1261 ctcggcgtcc cgctggaact cggggctccg cttgaggcgc gctatctctt ctgcgagcgc
     1321 ggcctttccc gcgcccagat gcttctgagc ctccgagact ccttcggaag ggttctgcgc
     1381 cgactcgacc ttgcgcacca gttcctccgt gaaagggttg agccggccga gcagttgctc
     1441 gacgccgggc gcctgctcct taccgccgca gccggcggcg agcaggcagc aggcggcggc
     1501 gagcagcgcg gcggtcaggt ttctaagcat cggcgctcca cagggtttat cgaggacggt
     1561 atgatgtagc aaagtggtaa aacgaaagtc aaacggctgg ggggcgaggc gatgaagcac
     1621 agcgaagggt tcctgaagct ggtcgaggac gccaggacgc gcgtgcgcga ggtgacggtc
     1681 gaggagaccc tggagcgctt gaaggcgggc gcgcgcctcg tggacgtgcg cgaggactcg
     1741 gagtgggagg cgggccacgc cgcgggcgca gagcacatgg gccgcggcgt catcgagcgc
     1801 gacatagagg cgcgcgtgcc cgacaagtcg gcggagctga ttctctactg cggcggcggc
     1861 taccgctcgg cgctcgccgc cgacaacctt cagaggatgg gctaccgcga agtcttctcg
     1921 atggccggcg gctggaaggc gtggaaggat gccggcgcgc ccgttcgcga agggcgggcg
     1981 ggcgagtagc aatctgaatt ctttcctctg tgctgctata atccggcccg ccagagaaaa
     2041 gttcggcggc aggaggtgcg tcaatgaagt tcgacggggc aggccgcggg gagagtctgt
     2101 ttaagcgagc gctgccggcg gcggcgctcg tggccgcgtg ctgcgcgccg gcctacgcgc
     2161 ggcaggaggg cgggccgatg gccgtgcctt cgataggcaa ggtcatggag cgccgcatgg
     2221 agatgtccgc gcgctccgtt gacgagacgc tgcgcaggcg cttcgaggaa gggaagcttt
     2281 cgagcaccta cccgacggac gccgccaagg cgagggcagg caccatgcgc gccgtctcgc
     2341 ccgaggagcg caaggcgctc gccttaaacg agaagggcat ctcctacttc gccaagaaca
     2401 agcacgacga tgctataaag cagtaccgcg aggccatacg catctacccg aacctcgcag
     2461 ccgcgcacaa caacctcggg agcgcgcagt tcgccctcgg cagctacaag gaggccgccg
     2521 agtcgttcgc gcgcgccgcg cagattgacg ccacatacgg cgaggccttc ttcaacctcg
     2581 ccctagccta catcaaactc gggagcgaga aggaggcgaa cgacgctctg gtggccgcca
     2641 cgcgcgcgta ccttacggcc ggcgacgagc agttcgactc gggggagcac aaggaggccg
     2701 aagcctcctt caaggcggtg ctccgcatag acccgggcta cctgcccgcg cacttccgcc
     2761 tcgggctcgt ctataacgcc gcgcagcgct tcgaggaggc ggccgaatcc ttccggctcg
     2821 tgctgcgctc gcagccgaag atagccgaag tccacgagaa cctggccgag gctctgtacg
     2881 ggcttcgcaa gtacgaggag gcggcc
//
LOCUS       DASPKR010000072         2254 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_267659, whole genome shotgun sequence.
ACCESSION   DASPKR010000072 DASPKR010000000
VERSION     DASPKR010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2254)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2254
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_267659"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..925
                     /locus_tag="VD968_02140"
     CDS             92..925
                     /locus_tag="VD968_02140"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: protein motif:HMM:NF013327.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HYE13220.1"
                     /translation="MNRLITAAVALPVLIASIIYPPLHLLFVALAVGAIVVALYEFWF
                     LAKRVGAKPDVVVGYTAVSGVLVAFFFDEPGTLVLIVPALVIAALVAEMLRGAPFDKM
                     ILSVGSTVLGVLYVAVLGGHLIAVRTGFDSPALSNPDAYSVSTHLLSFFFLVLMGSDT
                     GAYYTGRLLGKHKLAPKVSPGKTWEGAAGGMLASLIAAAIAHFWFFPELSLRAALPLA
                     AVMNVLGVVGDLTESALKRGANAKDAAKILPGHGGLLDRLDSLLFNAPLIYYFARFYF
                     Q"
     gene            937..2136
                     /locus_tag="VD968_02145"
     CDS             937..2136
                     /locus_tag="VD968_02145"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: protein motif:HMM:NF009114.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HYE13221.1"
                     /translation="MSSQGIAVLGSTGSIGCNTLKVVESFGDGRFRVVALAAGRNVKR
                     LAEQVGRHRPELVAVEDEGRAEELLAELRARGVEPPRVETGEAGMVSVATHGAARCVV
                     SATVGAVGFVPTLRALEAGKRVALANKETLVIAGELMTRAAARSGAELLPVDSEHNAI
                     HQCLRGERREEVRRLILTASGGPFRTKPLSAIAGATVEEAMRHPTWDMGAKITIDSAT
                     LMNKGLEVIEAHWLFGFGAEEIDIIVHPESVVHSMVELVDGSVIAQMGVTDMRHAIQY
                     ALTYPERHACQALPRLDLAKLSALHFEAPDTERFPCVQLAYRALREGGTLPAAMNAAN
                     EEAVAAFLRGAIRLTDIPRVIERVMGSHETRAASDLSVVLGVDRESRGRAREEIANLT
                     EPSKIVA"
BASE COUNT          340 a          788 c          737 g          389 t
ORIGIN      
        1 agccgtcgtc gcctaccagc gccgcgaccg gcgcttcggc ggcctgaagc tcgtcgcgaa
       61 cgcgaaatag ccgaccgccg cccgcttctc aatgaaccga ctaatcaccg ccgcagtcgc
      121 cctgcccgtc ctcatcgcct cgattattta cccgccgctg cacctgctct tcgtggcgct
      181 cgccgtgggc gcgattgtcg tggcgctcta cgagttctgg ttcctggcga agcgcgtggg
      241 cgcgaagcca gacgtggtgg tgggctacac ggcggtctcg ggcgtcctcg tcgccttctt
      301 cttcgacgag ccggggacgc tcgtcctaat cgtcccggcg ctcgtcatcg cggcgcttgt
      361 ggcggagatg ttgagaggcg cgccgttcga caaaatgatc ctctcggtcg gctcgaccgt
      421 gctcggcgtg ctctacgtcg ccgtgctggg ggggcatctg atcgcagtcc gcaccggctt
      481 cgactcgccg gcgctctcga acccggacgc ctacagcgtc tcgacgcacc tgctctcctt
      541 cttcttcctc gtgctgatgg gctcggacac gggcgcatac tacacggggc gcctgctcgg
      601 gaagcacaag ctcgcgccga aggtgagccc cggcaagacc tgggagggtg cggccggcgg
      661 catgctggcg agcctgattg cggccgcgat cgctcacttc tggttcttcc ccgagctttc
      721 gctgcgcgcg gcgctcccgc tcgcggccgt gatgaacgtg ctcggcgtgg tcggcgattt
      781 gaccgagagc gcgctaaagc gcggcgcgaa cgctaaagac gcggcgaaga ttctgcccgg
      841 ccacggcggc ctgctcgacc ggctcgatag cttgctcttc aacgcgccac tcatctacta
      901 tttcgcgcgg ttctactttc aatagctgac ttctttatgt cgtctcaggg aatcgccgtc
      961 ctcggctcga ccgggtcaat cggctgcaac acgctgaagg tggtcgagtc gttcggcgac
     1021 ggccgcttcc gcgtggtcgc gctcgcggcg ggcagaaatg ttaagaggct cgccgagcag
     1081 gtcgggcgcc accggcccga gctggtcgcg gtcgaggacg aagggcgcgc cgaagagctt
     1141 ctcgctgagc ttcgcgccag aggcgtcgag ccgccgcgcg tcgagacggg cgaggccggc
     1201 atggtctcgg tcgccacgca cggcgcggcg cgctgcgtcg tgagcgcgac ggtgggcgcc
     1261 gtcggcttcg tgccgacgct ccgagcgctc gaagccggca agcgcgtcgc gctcgccaac
     1321 aaggagacgc tcgtcatcgc gggcgagctg atgacgcgcg ccgccgcgcg ctcaggcgcg
     1381 gaactcctgc ccgttgactc cgagcacaac gccatccatc aatgtctgcg cggcgagcgc
     1441 cgcgaggagg tgcgccgcct cattctaact gcctcgggcg gccccttccg cacgaagcct
     1501 ttgagcgcaa tcgcgggcgc cacagttgag gaggccatgc gccacccgac ctgggacatg
     1561 ggcgcgaaga ttacgattga ctcggcgacg ctcatgaaca aggggctcga agtcatcgag
     1621 gcccactggc tcttcggctt cggcgcggag gagattgaca taatcgtcca ccccgagtcg
     1681 gtcgtccact cgatggtcga gctggttgac ggctccgtaa tcgcgcagat gggcgtgacc
     1741 gacatgcgcc acgccataca gtacgcgctc acctaccccg agcgtcacgc ctgccaggcg
     1801 ctcccacggc tcgacctcgc gaagctctcg gcgctccact tcgaggcgcc ggacacggag
     1861 cgtttcccct gcgtgcagct cgcctaccgc gccctgcggg agggaggcac gctccccgca
     1921 gccatgaacg cggcgaacga agaggccgta gccgccttcc tgcgcggcgc gatacggctg
     1981 accgacatcc ctcgcgtcat cgaaagagtg atgggctcgc acgagacccg cgccgcctcc
     2041 gacctgtccg tcgtcctcgg cgttgaccgc gagtcgcgcg ggcgcgcgcg ggaagagatt
     2101 gccaatctga ccgagccctc gaaaatcgtc gcctgaagcg gctcccgcca ttttcacgcc
     2161 tccggcgtga aactttaatc ccacgccgga ggcgccgagt ttgacggtcg cgctcgccgc
     2221 cgcttaaact tacgtgcaac tgccggccgg ggca
//
LOCUS       DASPKR010000073         3559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1820076, whole genome shotgun sequence.
ACCESSION   DASPKR010000073 DASPKR010000000
VERSION     DASPKR010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3559)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3559
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1820076"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..616
                     /locus_tag="VD968_02150"
     CDS             <1..616
                     /locus_tag="VD968_02150"
                     /inference="COORDINATES: protein motif:HMM:NF022604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2935 domain-containing protein"
                     /protein_id="HYE13222.1"
                     /translation="GPELAGPRGQAERFQQTFAGQLERARAASLDRGNYAAFNRSTVE
                     LVKPYAEFKHRMCDEQAAGRLQSLVWPAFFEHTGREAERFARRLEQFSRGDTSTDVKE
                     AAEFWTIIMGEHADFIAHLLDPEESELIRKAMQTSDAFRRMHKSAPSSKGQVEKAVDD
                     IIDFKTAAEKGIQTGRIRSIIHPALADHVRREALKAADELKRAA"
     gene            653..997
                     /locus_tag="VD968_02155"
     CDS             653..997
                     /locus_tag="VD968_02155"
                     /inference="COORDINATES: protein motif:HMM:NF016109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQ-loop repeat-containing protein"
                     /protein_id="HYE13223.1"
                     /translation="MRAPHSRKDNAICSGLCMEILGWAGTALVVVAYYPQIHHLYVER
                     CAWGISALTWLIWLAASVLLLTYCALRGEAMLAVVQGVNIAAIVTTLLLVRRSNRVCP
                     HHMKVAETAARR"
     gene            1092..1346
                     /locus_tag="VD968_02160"
     CDS             1092..1346
                     /locus_tag="VD968_02160"
                     /inference="COORDINATES: protein motif:HMM:NF021505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13224.1"
                     /translation="MHQMLIQFPFRLTATAVVFDVIYLARGGEAMAAVAYWMVNDYEA
                     QQAREPGGHGARSAPTLIHEGARQSRQRKREDEERAEGPG"
     gene            complement(1394..2281)
                     /locus_tag="VD968_02165"
     CDS             complement(1394..2281)
                     /locus_tag="VD968_02165"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYE13225.1"
                     /translation="MERKVASDYPQELLDLFDEYQHGRIDRRAFLDRAGKFAVGGLTV
                     AAIFESLRPNYAWAQQVKPEDKRIRVGYETVQSPSGNGSVKGYLARPAKSGKHPAVLV
                     IHENRGLNPYIEDVARRLALADFMAFAPDGLTSVGGYPGSDEKGAALFREVDGKKMTE
                     DFVAAAKWLKARSDSTGKLGAVGFCFGGGMVNQLAVRLGADLNAGVAFYGRQAGADDV
                     PKISAPLLLHYAGNDQRVNEGIAAYEAALKANKKTFTSHMYEGKQHGFHNDTTPRYDE
                     AAAKLAWARTLEFFNKHLR"
     gene            complement(2313..>3559)
                     /locus_tag="VD968_02170"
     CDS             complement(2313..>3559)
                     /locus_tag="VD968_02170"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE13226.1"
                     /translation="GHPGRAFMEQHRITVEDYEQFVGAEAVERILAKAEPLRDMHVVH
                     VNSTYQGGGVAEILLSMTLLMNNMGVRTGWRIIHGPPDFYGVTKKMHNALQGGEIELT
                     EQKKQIYEEVVYENALRNHLRHDLVVIHDPQPLQLIRHYKKRGPWVWRCHVDLSSPNP
                     ELWEYMAPFVERYDAVILSIPEYRQRLRAPQLFFMPAIDPFTIKNRELSEEEIDERLD
                     YYGIPRDLPLVVQVSRFDRWKDPQGVIRAFKLARKEVGATLVLLGNAATDDPEGEEVY
                     NSLLGSREERIIILSREDTALVNALQRRAAVVLQKSLREGFGLTVAEAMWKGTPVIGG
                     NVGGIRHQIEDGVNGFLVSSVEEAAARIVQLLKDEGLRARMGRQARETVRKKFLLTRY
                     LEQHLGLYNSFEATYRLRDGGR"
BASE COUNT          596 a         1147 c         1180 g          636 t
ORIGIN      
        1 ggggccggaa ctggccgggc cgcgcgggca ggccgagcgg ttccagcaga ccttcgccgg
       61 ccagttggag cgcgcgcgcg ccgcgagcct cgaccgaggc aactacgccg ccttcaaccg
      121 ctcgaccgtc gagctggtca agccttacgc cgagttcaag cacaggatgt gcgacgagca
      181 ggccgcgggc cgccttcaaa gcctcgtctg gccggccttc ttcgagcaca cggggcgcga
      241 ggccgagcgc ttcgcccgaa ggctcgaaca gttctcgcgc ggcgacactt cgacggacgt
      301 gaaggaggcc gcggagttct ggacaatcat catgggagag cacgccgact tcatcgcgca
      361 ccttttagac cccgaggaga gcgagctcat ccggaaggcg atgcagacga gcgacgcctt
      421 ccgccggatg cacaagagcg cgccatcgtc gaaggggcag gtcgagaagg ccgtggacga
      481 catcattgac ttcaagaccg ccgccgagaa gggtatccaa accgggagga taaggagcat
      541 catccacccg gcgctcgccg accacgtccg ccgcgaggcg ctgaaggccg cggacgagct
      601 gaagcgcgca gcgtaatcct tttgaggctc cttcgggagt gaggccgtcg ccgtgcgcgc
      661 acctcactcc cggaaggaca acgccatctg ctcggggctg tgtatggaaa tcttaggctg
      721 ggcggggacg gcactggtcg tcgtcgcgta ctacccgcaa atacatcacc tctacgtcga
      781 aaggtgcgcg tggggcatca gcgccctgac ctggctgatc tggctcgcag ccagcgtgct
      841 gctgctcaca tactgcgcgc ttcgcgggga ggccatgctg gcagtcgtgc agggcgtcaa
      901 catcgcggcc atcgtgacca ccctcctcct cgtgcgaagg agcaaccggg tctgcccgca
      961 tcacatgaag gtcgccgaga cggccgcccg gcggtgacca agcttttccg cgaaagacga
     1021 gagggatgct ggcggtaatc tcttcgcgga ggagaactca tggggggcaa agctaaggca
     1081 ctcgggcacc tattcaccaa atgctcatcc agttcccgtt ccggctaacg gcgacggcag
     1141 tcgtcttcga cgttatttac ttggcccggg gcggcgaggc gatggcggcc gttgcgtact
     1201 ggatggttaa cgactacgag gcgcagcaag ccagagagcc gggcggccac ggcgcgcgga
     1261 gcgcacctac gctcattcac gagggtgctc ggcagtctcg gcaaagaaag agggaagacg
     1321 aagagagggc ggaggggccg gggtagccgc gccgggagcg cgcaccgtga tagcccctca
     1381 cagttctcgg gcgtcatcgc aggtgcttgt tgaagaattc gagggtgcgc gcccacgcaa
     1441 gtttggcggc cgcctcgtcg tatcgcggcg tcgtgtcgtt gtggaagccg tgctgtttgc
     1501 cctcgtacat gtgcgacgtg aacgtcttct tgttggcctt gagcgccgcc tcgtaagccg
     1561 ctatcccttc gttcacccgc tggtcgttgc ccgcgtagtg cagcagcaac ggcgcggaaa
     1621 tcttcggcac gtcgtcggcg cccgcctggc ggccgtagaa agcgaccccg gcgttcaagt
     1681 cggcgccgag gcgcacggcc aactggttca ccatcccgcc gccgaagcag aagcccaccg
     1741 cgcccagctt gccggtggaa tctgaacgcg ccttgagcca tttggccgcc gcgacgaaat
     1801 cttcggtcat cttcttcccg tccacctcgc ggaagagggc ggcgcccttc tcgtcgctgc
     1861 cggggtagcc gccgaccgaa gtcagcccgt cgggcgcgaa ggccatgaag tcggcgagcg
     1921 cgaggcggcg cgcgacgtct tcgatgtagg ggttaaggcc gcggttttcg tggatgacga
     1981 gcacggccgg gtgcttcccg ctcttcgccg ggcgggccag atagcctttg acagaaccgt
     2041 tccccgaagg cgattgcacg gtctcgtagc ctacccggat gcgcttgtcc tccggcttca
     2101 cctgctgcgc ccatgcgtag ttgggccgca ggctctcgaa tatggcggcg acggtcaggc
     2161 cgccgaccgc gaacttgccg gcgcgatcca ggaaggcgcg gcggtcaatt cggccgtgct
     2221 gatactcgtc gaagaggtct aacaactctt gcgggtaatc gctcgccact ttacgttcca
     2281 ttcttcctcc ttgcatgggg ttaagcggat tcttaccggc cgccgtcgcg gagcctgtag
     2341 gtcgcctcga acgagttgta gaggccgagg tgctgctcga ggtagcgcgt cagcaggaac
     2401 ttcttcctca ccgtctcccg cgcctgcctg cccatgcgcg cgcgcaaccc ttcgtccttg
     2461 aggagctgaa cgatacgcgc ggcggcctcc tccacggacg agacgaggaa gccgttcacg
     2521 ccgtcctcga tctggtgccg gatgccgccg acgttgccgc cgatgacggg cgtccccttc
     2581 cacatcgcct cggcgaccgt caggccgaag ccctcccgta aggacttctg caggacgacc
     2641 gcggccctcc tctggagcgc gttcacaagg gccgtgtcct cgcgcgagag gatgattatg
     2701 cgctcctcgc ggctgccgag cagggagttg taaacctcct cgccctcggg gtcgtccgtg
     2761 gcggcgttgc cgagcagcac gagcgtggcg cccacctctt tgcgcgccag cttgaaggcc
     2821 cggatgacgc cctgcgggtc tttccagcgg tcgaagcggg atacctgaac gacgagcggg
     2881 aggtcgcgcg ggattccgta gtagtcgagc cgctcgtcta tctcctcttc actcagctcg
     2941 cggttcttga tggtgaaggg gtcaatggcc ggcatgaaga agagctgcgg cgccctgagc
     3001 ctctgccggt actccgggat gctgaggatg acggcgtcgt agcgctcgac gaagggggcc
     3061 atatactccc acagctccgg gttggggctc gacagatcca cgtggcagcg ccagacccac
     3121 ggccccctct tcttgtagtg acggatgagc tgtagcggct gcgggtcgtg gatgacgacg
     3181 aggtcgtggc ggaggtggtt gcgcagcgcg ttctcataga ccacttcctc gtagatctgc
     3241 ttcttctgct cggtcagctc gatctcgccg ccctgcaggg cgttgtgcat cttcttggtg
     3301 acgccgtaga agtcgggcgg gccgtggatg atgcgccagc cggtgcgcac ccccatgttg
     3361 ttcatcagca gcgtcatcga gagcagaatc tccgcgaccc cgccgccctg gtaggttgag
     3421 ttgacgtgga cgacgtgcat gtcgcggagc ggctcggcct tagcgagtat ccgctcgacg
     3481 gcctccgccc cgacgaactg ttcgtagtcc tcgacagtaa tcctgtgttg ttccataaag
     3541 gcccggcccg gatggcccc
//
LOCUS       DASPKR010000074         9047 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_914915, whole genome shotgun sequence.
ACCESSION   DASPKR010000074 DASPKR010000000
VERSION     DASPKR010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9047)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9047
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_914915"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1218
                     /gene="pabB"
                     /locus_tag="VD968_02175"
     CDS             <1..1218
                     /gene="pabB"
                     /locus_tag="VD968_02175"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: protein motif:HMM:TIGR00553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008153 - para-aminobenzoic acid
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HYE13227.1"
                     /translation="LLTRARGTRTPRARRGHVLSVLDERLAERRVARAPGAPLPGGAC
                     FVTLSYGLARQLEKLRTRERGCDAAAEPDAVLAFFDVLVVHDYASEETRLVGVSAERV
                     RETAASLRRSPGVGNDRARGEGGGEARFASNFSRAEYVAAVGRLREHIFAGDIYQANL
                     TQQFTCRPSAAATPERVFLRLRREHPASFAAFVRRGRRGAIVSASPERFLRVGGGSVE
                     AWPIKGTRPRGRTGEEDARLRAELLASEKDRAENVMIVDLMRNDLGRVCRYGSVEVTS
                     LCELQEHPTLFHLVSKVRGRLREGVTAGELLRATFPCGSITGAPKIRAMEILDEVETA
                     PRGVSMGAIGYFAFDGSADLNVAIRTITFGGDGAARFNVGGGVVADSDPEAEYEESLV
                     KARALMRALRDGE"
     gene            1226..2071
                     /locus_tag="VD968_02180"
     CDS             1226..2071
                     /locus_tag="VD968_02180"
                     /inference="COORDINATES: protein motif:HMM:NF013247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HYE13228.1"
                     /translation="MHERVSINGRLVKASEARLPAVTGATMHGRGVFTTLAVYHGRPF
                     LWEAHWSRLAEHAARAGVEMPFAEAEGHGALAKLIEANKVTRGRARLTVLARAARGPW
                     AVADAGGPASDLLIWTGDERKSEDETLSLTVSPHRLNTFSPLAGVKSVNYLDHVLAWE
                     EARSRDFDEAVVLNERGEVVSATMANLFWVKHGTAHTPALQTGALAGTTRARVMELAE
                     ELAVPVVEGAYTLHDVGDAEEIFLTSSALGVALVTAFDFHRYTVPVGSVALRLHEAFR
                     QLTLA"
     gene            2166..3929
                     /locus_tag="VD968_02185"
     CDS             2166..3929
                     /locus_tag="VD968_02185"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYE13229.1"
                     /translation="MASDGKDSGTGAHRLLAGGRAEVLCALMLAVMAAQMLLVIRQKS
                     ITVDEWVLIPAGYYHLTEGDFRPVNEHPPFAKILSALPLLTSGAVAPPIDPAPRHDYG
                     YFLGLFSQFWHSNAERLDTLAFWARVPAVMTTLLLGALVFHFARRHWGARAALFATLL
                     FTLEPTVLAHGRVVQTDIPSALSLLLFAFALYEYLKGPTAARAALVGLCAGLAAVTKF
                     SMIVLGPLLLLLMAALLVFAPRRGLRRASVAGHAVALGVAAVLAVNAAYLFRNRAPEP
                     LDEALRRLVVPAGASESLRAPLEFGYLALQKIFPADFIYGIGWQLGHAHEGHAAGLLG
                     EHSQHGWWYYFPVAFALKTTLPFLLLSAAALLWAVLSLRRGADGRVLVLVLPAALFTA
                     LLMMSTINIGVRYMLPAYPFLCILCGAFLDRVMVKKKHQLVLGSLVVAAPLAWAGVEA
                     VRAYPDHMSYTNQLTRGAPDWWHLSDSNVEWGDDVRPLALYLRERGERRVGAALLNWQ
                     LLELYGLEMAAVFVPPGEAREDVRYVAIGASLLNGSTVPGGFDNGVRLSEEERVNYFD
                     EFRRREPEKVFGNSIYLYRMK"
     gene            4053..4808
                     /locus_tag="VD968_02190"
     CDS             4053..4808
                     /locus_tag="VD968_02190"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenol monophosphomannose synthase"
                     /protein_id="HYE13230.1"
                     /translation="MSTDRTLIIIPTYNERENVAALVPEIFRHAPDADVLVIDDNSPD
                     GTADLAEELFGADARFSVMRRTGARGYGRSVVDGYRRALEAGYARLVQMDADFSHDPA
                     SVPALMRAGREADVVIGSRYCEGGRVENWPLRRRLLSRFANRYVGVITGLRVGDATSG
                     FRCYSQRALRHLLDGLVVAEGYAFLVEATYRAHRGGLRVAEVPITFTDRREGQSKISR
                     KVIFESVLMPWRLRFARRRGTEEPGLRAMNSEQ"
     gene            4917..5903
                     /locus_tag="VD968_02195"
     CDS             4917..5903
                     /locus_tag="VD968_02195"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYE13231.1"
                     /translation="MKRIIVLVALLAAASGCAQEAGNTNTTNTANVNASPVASPSPTG
                     VSLGDARAREEKVWDALKAKNWDAFGKLISDDHTYVTGDGIYNHEAAVEGVKKLNLTE
                     VTLTDWKVVNADADAYVVTYTVQAKGDYDGQPLGPKPTRESTAWVKRADAARGDGGWV
                     AVYHQDSEVVEPPQPAASPGSGSNSNSAPAGSPAASPAAGASPSGSPASGGAAAGPTD
                     SEKQAWAALQRKDWAAFESYLAEEQIEVEPVGVNSTRAETLAGVKQFDFSGATLSDFK
                     EVKIDTDAALVIYTVKATGPGWNPGGERHTTLWSNRNGRWRAVFHQGTYITK"
     gene            complement(5975..7048)
                     /gene="amrS"
                     /locus_tag="VD968_02200"
     CDS             complement(5975..7048)
                     /gene="amrS"
                     /locus_tag="VD968_02200"
                     /inference="COORDINATES: protein motif:HMM:TIGR04337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system radical SAM enzyme"
                     /protein_id="HYE13232.1"
                     /translation="MPLGARSASLAEVLDEMTAEAAEELTERFDDGSLRCYACGHRCL
                     IGEGKRGICKVRLNEGGRLLVPSGYVAALACDPTEKKPFFHAMPGSDTLTFGMLGCDL
                     HCGYCQNWLTSQALRDDAAGTAPRVVSAERLVSMARECGARMVGSSYNEPLITAEWAV
                     EVFTKAKAAGFKTAFISNGNATPQVLDYLRPVTDCYKIDLKTMSDRGYRRLGGVVGNI
                     LDTVRMVHERGFWEEIVTLVIPGFNDSEEELRSAAEFIASVSPDIPWHVTAFHPDYRM
                     TENSGTTAAQLVRACEIGREAGLRFVYAGNLPGRVGRWENTYCPACDALLVERYGYMI
                     RKMRIGADGLCPECATAIPGVWG"
     gene            7159..7830
                     /locus_tag="VD968_02205"
     CDS             7159..7830
                     /locus_tag="VD968_02205"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE13233.1"
                     /translation="MIIEQITLTPFQQQTRVLGCERTRRAVCVDPGEETDEIVGALER
                     HGLELQAIALTHAHMDHVGGVAALKRRRPGAEVILHEGDLPLYEGLPEQPGWLGIPRS
                     QWARLGFDYEAPPPVGRHWQDGETYAVGDLEFKVLHCPGHTPGHVVLFEPNERKVFVG
                     DCLFAGSIGRTDLPGGSTEQLLRSIREKILPLGDDVVVYSGHGPETTVGRERLTNPFL
                     TGRYF"
     gene            complement(7857..8063)
                     /locus_tag="VD968_02210"
     CDS             complement(7857..8063)
                     /locus_tag="VD968_02210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13234.1"
                     /translation="MADEKQKLPNEINPETGQFDARFMLWRVFCAENGIAVETLPSDL
                     KGEVRDRWDKLKNERLHRPTEEKE"
     gene            complement(8142..9032)
                     /locus_tag="VD968_02215"
     CDS             complement(8142..9032)
                     /locus_tag="VD968_02215"
                     /inference="COORDINATES: protein motif:HMM:NF021604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HYE13235.1"
                     /translation="MRHEDYKELLALEAAGALDAEEARALGAHLPSCRECRAELDALH
                     DAAAGLAYAVAPVAPPARLRESLLEQVRALGPRRAPAAEAAPPAVEATQAAEPLADRA
                     RDFVSRLGFWQLLAARPSFALGAALAVGLVFALSVVSYALWSRNAELRAEVARAGAEA
                     ARSREELERERAELARAREMGEMLASPGAGMARLAGKGPAPGASAVVAFDPSTGRAVL
                     ITSGLPPAPAGKAYQLWFIAGGKPLPGRVFKTDEAGRGRLDDRMPPGMPAAPTFAVTL
                     ERESGAPAPEGAIYLAGSAS"
BASE COUNT         1373 a         3109 c         3137 g         1428 t
ORIGIN      
        1 cttctcacgc gcgcgcgcgg cacacggacg ccgagggccc ggcgcggcca cgtgctatcg
       61 gtgcttgacg aaaggctcgc cgaacggcgc gtcgctcgcg cgcccggcgc ccctctgccg
      121 ggcggcgcgt gcttcgtcac gctctcttac gggctcgcgc ggcagctcga aaaactccgc
      181 acgcgcgagc gggggtgtga cgccgcggcc gagcctgacg ctgtactcgc cttcttcgac
      241 gtgctcgtcg ttcacgacta cgcgagcgaa gagacgcggc tggtgggcgt gtcggcggag
      301 cgcgtgcgcg agacggccgc gagcctgcgt cgctcgccgg gcgtcgggaa cgaccgcgcg
      361 cggggcgaag gcggcggcga ggcacgcttc gcgtcgaact tctcgcgcgc cgagtacgtc
      421 gccgcggtcg ggcgcctgcg cgagcacatc ttcgcgggcg acatatacca ggcgaacctg
      481 acgcagcagt tcacttgccg cccttccgcg gcggccacgc ccgagcgagt cttcctccgc
      541 ctcaggcgcg agcaccccgc ctcgttcgcg gccttcgtcc ggcgcggccg gcgcggcgca
      601 atcgtcagcg cgtcgcccga gaggttcctg cgcgtggggg gcggcagcgt ggaagcctgg
      661 ccgataaagg ggacgcggcc acgggggcgc acaggcgagg aggacgcgcg actgcgcgcc
      721 gagcttctgg cgagcgagaa agaccgcgcc gagaacgtga tgatagttga cctgatgcgc
      781 aacgacctag gccgcgtctg ccgctacggc agcgtggagg tcacgtctct ttgcgagctt
      841 caggagcacc cgacgctctt ccacctcgtg tcgaaggtgc gtgggcgctt gcgcgagggc
      901 gtgacggccg gcgagctctt gcgcgcgacg ttcccttgcg gctccatcac gggcgcgccg
      961 aagatacgcg cgatggaaat tttagacgag gttgagacgg cgccgcgcgg cgtctcgatg
     1021 ggtgccatcg gctacttcgc cttcgacggc tcggccgacc tgaacgtggc gatccgcacc
     1081 ataaccttcg gcggcgacgg cgcggcgcgc ttcaacgtgg gcggcggcgt cgtcgccgac
     1141 agcgaccccg aggccgagta cgaagagtct ctggtgaagg cgcgggcctt aatgcgcgcg
     1201 ctgcgcgacg gcgagtgagg gacgggtgca cgagcgcgtg agcataaacg ggaggctggt
     1261 gaaggcgtcg gaagcgcggc tgcctgcggt gacgggcgcg accatgcacg gccgcggcgt
     1321 cttcacgacg ctcgccgtct atcacggacg tcccttcctg tgggaggcgc actggtcgcg
     1381 cctcgccgag cacgcggcgc gcgcgggcgt cgagatgccc ttcgcggagg ccgaaggcca
     1441 cggcgcgctc gcgaagctga tagaggcgaa taaggtgacg cgcgggcgcg cgcgcctgac
     1501 cgtgctcgcg cgcgccgcgc gcgggccgtg ggcggtcgcg gatgccggcg ggccggcttc
     1561 cgacctgctc atctggacgg gcgacgagag gaagagtgag gacgaaacgc tttcgctcac
     1621 cgtctcgccg caccggctga acaccttctc gccgctcgcc ggggtgaaga gcgtcaacta
     1681 cctcgatcac gtgctggcct gggaggaggc gcgctcgcgc gacttcgacg aggccgtcgt
     1741 cttgaacgag cgcggcgagg tcgtctcggc aacgatggcg aacctcttct gggtgaagca
     1801 cggcacggcg cacacgcccg ccttgcagac gggcgcactc gcgggcacga cgcgggcgcg
     1861 cgtcatggag ctggccgaag agcttgccgt ccccgtcgtc gagggcgcgt acacacttca
     1921 cgacgtgggc gacgccgagg aaatcttcct cacgtcctcc gccctcggag tcgcgctcgt
     1981 gacggccttc gacttccacc gctacacagt cccggtcggc agcgtcgccc tgcgcctcca
     2041 cgaagccttc cgccagctca cgctcgccta aggcgcgccg ggccttctgc ctttttactt
     2101 tcccgcgccc gtcatccata atagcgccct tttgggagcc gctcggcgct cccgactacc
     2161 accgcatggc ctcagacggg aaagattcgg ggacgggcgc gcaccgcctt ctggcgggcg
     2221 ggcgcgcaga agttttgtgc gccctgatgc tcgccgtgat ggcggcgcag atgctcctcg
     2281 tcataaggca gaagagcatc acggttgacg agtgggtgct gataccggcc ggatactacc
     2341 acctgaccga gggcgacttc cgccccgtca acgagcaccc gccgttcgcg aaaatcctga
     2401 gcgcgctgcc gctccttacc tcgggcgccg tagcgccgcc catagacccg gcgcccaggc
     2461 acgactacgg atacttcctc ggcctcttca gccagttctg gcactcgaac gccgagaggc
     2521 tcgacaccct cgcgttctgg gcgcgcgtgc ccgcggtgat gacgacgctg ctgctcggcg
     2581 cgctcgtctt ccacttcgcc cgccgccact ggggcgcacg cgccgcgctc ttcgccacgc
     2641 tcctgttcac gcttgagccg acggtgctcg cgcacgggcg cgtcgtgcag acggacatac
     2701 cttctgcgct ctcgctcctc ctcttcgcgt tcgcgctcta cgagtacctg aaggggccga
     2761 cggcggcgcg cgcggcgcta gtcgggctct gcgcggggct cgcggccgtg acgaagttct
     2821 cgatgatagt gctggggccg ctgctcctcc tgctgatggc ggcgctgctc gtcttcgcgc
     2881 cccggagggg cttgcggcgc gcgtcggtcg cgggccacgc cgtcgcgctc ggcgtggcgg
     2941 ccgttctggc ggtcaacgcg gcctacctct tccgcaaccg cgcgcccgag cccctggacg
     3001 aggcgctccg ccggttggtc gtcccggccg gcgcgtccga gtctttgcgc gcgcccctgg
     3061 agttcggcta cctcgctttg cagaaaatct tccccgcgga tttcatctac ggcatcggct
     3121 ggcagttggg gcacgcgcac gagggtcacg ccgccgggct gctgggggag cacagccagc
     3181 acggctggtg gtactacttc cccgtcgcct tcgcgttgaa gacgacgctc ccgttccttc
     3241 tgctctcggc cgctgcgctc ctctgggccg tgctgagttt gcggcgcggg gccgacgggc
     3301 gcgtgctggt gctcgtgctg cccgcggcgc tcttcacggc gctgctgatg atgagcacga
     3361 taaacatagg cgtgcgctac atgctgcccg cctacccgtt cctgtgcata ctctgcggag
     3421 ccttcctcga ccgcgtgatg gtgaagaaga agcaccagct cgtcctgggc agcctggtag
     3481 tcgccgcgcc gctcgcgtgg gcgggcgttg aggccgtgcg cgcctatccc gaccacatga
     3541 gctacacgaa ccaactcact cgcggggcgc ccgactggtg gcacttgtca gactcgaacg
     3601 tcgagtgggg cgacgacgtg cgcccattgg cgctatactt gcgcgagcgg ggggaacgaa
     3661 gggtaggcgc ggcgctcctg aactggcagc tattggagct ttacggcctt gagatggcgg
     3721 ccgtcttcgt gccgccgggc gaggcgcgcg aggacgtgcg ctacgtcgcc atcggcgcga
     3781 gcctcctgaa cggctcgacc gtgccgggcg gcttcgacaa cggcgtgcgc ctgagcgagg
     3841 aggagcgcgt caactacttc gacgagttcc gccgccgcga gcccgagaaa gtgttcggca
     3901 actcgatata tctttaccgc atgaaatagc gactggcggt cagctatcag cagtcggctt
     3961 caagcggcgg cgccgggtgt cggtctcccc gcgacggccg ggctgctaag gctgaaagct
     4021 aaggctgact actgatagct gaaagctgac taatgagcac agaccgcact ctcatcatca
     4081 tcccgactta caacgagcgc gagaacgtcg cggcgctcgt cccggagatt ttccggcacg
     4141 cgcccgacgc ggacgtgctc gtcattgacg acaactcgcc ggacggcacg gccgacctcg
     4201 ccgaagagct tttcggcgcg gacgcgcgct tctctgtcat gcggcgcacg ggcgcgcgcg
     4261 gctacggccg tagcgtcgtt gacggctacc gccgcgcgct cgaagctggc tacgcgcgcc
     4321 tcgtgcagat ggacgcggac ttctcgcacg accccgcgtc agtccccgcg ctcatgcgcg
     4381 cgggccggga ggccgacgta gtcatcggct cgcgctattg cgagggcggg cgcgtcgaga
     4441 actggccgct caggcggcgg ctcctgagcc gcttcgccaa ccgctatgtc ggcgtgataa
     4501 cgggcctgcg cgtcggcgac gccacgagcg gcttccgctg ctacagccag cgcgctctcc
     4561 ggcacctgct cgacgggctc gtggtcgccg aagggtacgc cttcttagtc gaagccacct
     4621 accgagcgca ccgcggcggc ctgcgcgtcg ccgaagtccc catcaccttc acggacaggc
     4681 gcgagggcca gtcaaagatt tcccgcaagg tcatattcga gtcggtgttg atgccctggc
     4741 gcctgcgctt cgcgcgccgc cgcggcacgg aggagcccgg ccttcgggcg atgaactcgg
     4801 agcagtgagc ccgaggcgaa ccgccggccg ccgcccgcta atactccttg actccgcgcg
     4861 ccgtttagcg tagaacgcag gcgctctaca ataccccttt ccgcggagtt ctcccgatga
     4921 aaagaatcat cgtgctcgtc gcgctgctcg cggccgcctc aggctgcgcg caggaggcgg
     4981 gcaacaccaa caccaccaac acggcgaacg tgaacgcctc gcccgtcgcg tcgccgtcgc
     5041 ccacgggcgt ctctctcggc gatgccaggg cgcgcgagga gaaggtctgg gacgcgctca
     5101 aggccaagaa ctgggacgcc ttcggcaaac tcatctccga cgaccacaca tacgtgaccg
     5161 gcgacggcat ctacaaccac gaggccgcgg tcgaaggcgt caagaagctc aacctcaccg
     5221 aggtcacgct gacggactgg aaggtcgtca acgctgacgc cgacgcctac gtcgtgactt
     5281 acaccgtgca ggcgaagggg gactacgacg gccagcccct cggcccgaag cccacgcgcg
     5341 agagcaccgc gtgggtgaag cgcgccgacg ccgctagggg cgacggcggc tgggtcgccg
     5401 tctatcacca ggactcggag gtagtcgagc cgccgcagcc cgcggcttcg ccgggctcgg
     5461 gctccaactc caactctgcc ccggccggct cgccagccgc ctcgccggcc gcgggcgctt
     5521 cgccctcggg ctcgcccgcc tcgggaggcg cggccgccgg cccgaccgac agcgagaagc
     5581 aggcgtgggc cgcgctacag cgcaaggact gggcggcctt cgagagctac ctggctgagg
     5641 aacagatcga ggtggagccg gtgggcgtca acagcacgag ggccgagacg ttggcgggcg
     5701 tcaagcagtt cgacttctcg ggcgcgacgc tctccgactt caaggaggtg aagatagaca
     5761 cggacgccgc cctcgtcatc tacacggtca aggcgacggg gccgggctgg aaccccggcg
     5821 gcgagcgcca caccacgctc tggtctaacc gcaacggccg ctggcgcgcc gtcttccacc
     5881 aggggacata catcacgaaa taacggtaag aaggcggaag gcagtcaaga acgctcaccg
     5941 tgtcttgact gccttccgcc ttctgccttc cctctcaccc ccagacgccg gggattgccg
     6001 tggcgcattc ggggcagagg ccgtcggcgc cgattcgcat cttccttatc atgtagccgt
     6061 agcgctcgac gaggagcgcg tcgcaggcgg ggcagtacgt gttctcccag cggccgaccc
     6121 tgcccggcag atttccggca tagacgaacc gcagccccgc ctcgcgccct atctcgcagg
     6181 cgcgcacgag ctgtgcggcc gtcgtgcccg agttctccgt catgcggtag tcggggtgga
     6241 aggcggtcac gtgccagggg atgtcgggcg agacggaggc gatgaactcg gcggcgctgc
     6301 gaagctcctc ttccgagtcg ttgaagccgg ggatgacgag cgtgactatc tcctcccaga
     6361 aaccgcgctc gtgaaccata cgcaccgtgt cgagaatgtt cccgaccacg ccgccgaggc
     6421 gcctgtaccc gcggtcgctc atcgtcttaa ggtcaatctt gtagcagtcg gtcacgggcc
     6481 gcaggtagtc gagcacctgc ggcgtcgcgt tcccgttcga gatgaaggcg gtcttgaagc
     6541 ccgccgcctt cgccttcgtg aagacctcga ccgcccactc cgccgttatc agcggctcgt
     6601 tgtagctcga cccgaccatc ctcgccccgc actcccgcgc catagacacc agcctctcgg
     6661 ccgaaaccac gcgcggcgca gtgcccgccg cgtcgtcccg cagggcctgc gaggtcaacc
     6721 agttctggca gtaaccgcaa tgcaggtcgc agccgagcat gccgaaggtg agtgtgtcgg
     6781 agccgggcat ggcgtggaag aagggcttct tctcggtcgg gtcgcaggcg agggcggcga
     6841 cgtagcccga gggcacgagc aggcggccgc cctcgttgag gcgaaccttg cagataccgc
     6901 gcttgccctc gcctatcagg cagcggtggc cgcacgcgta gcagcgcaag ctcccgtcgt
     6961 cgaagcgctc ggtcaactcc tccgccgctt cggccgtcat ctcgtctaat acttcggcga
     7021 ggctcgccga gcgcgcgccc agtggcatgg cttccttcca gacttccgcc ggtggcggaa
     7081 aacggggggc tgttgtactt tctcggggga gtttcccgag acttatttta ctacttcggc
     7141 ggagtgtttt cacggggcat gattatcgag cagattacct tgacgccttt ccagcagcag
     7201 acgcgcgtgc tcgggtgcga gcggacgcgc cgggccgtgt gcgttgaccc cggcgaggag
     7261 acggacgaaa tcgtcggggc gctagagagg cacgggctgg agcttcaggc catcgcgctc
     7321 acgcacgcgc acatggatca cgtcgggggc gtggcggccc tcaagcgccg gcggccgggc
     7381 gcggaggtga tactgcacga gggcgacctg ccgctgtatg aggggctccc cgaacagccg
     7441 ggctggctcg gcataccgcg ctcgcagtgg gctcggctag ggttcgacta cgaggcgccg
     7501 ccgccggtcg ggcggcactg gcaggacggc gagacttacg cggtcggaga cctcgagttc
     7561 aaggtgctgc actgccccgg ccacacgccg ggccacgtcg tcctcttcga gccgaacgag
     7621 aggaaggtct tcgtgggcga ctgcctgttc gcgggatcaa tcgggaggac tgacctgccg
     7681 ggcggctcga cggagcagct tctgaggtct ataagggaga agattttgcc gctaggcgac
     7741 gacgtggtcg tctattcggg ccacgggccg gagacgaccg tggggcgtga gcggctgacg
     7801 aacccattcc tcacggggcg gtacttctag ggttgcggcg agaggcgggc gggccgctac
     7861 tccttctctt ccgtcggcct gtgaaggcgc tcattcttga gcttgtccca cctgtccctg
     7921 acttcgccct taaggtcgct cgggagcgtc tcgacggcta tgccgttctc ggcgcagaag
     7981 acgcgccaca gcatgaaccg cgcgtcgaac tgtcccgtct cggggttgat ctcgttcggc
     8041 agcttctgct tctcgtccgc cacttctcgc cagctcctag ctctccgagt cacttaaact
     8101 tttggcggac agtgtagcaa agaaagaagt caagtcagaa gtcaggacgc ggagcccgct
     8161 aggtagatgg cgccctcggg ggcgggggcg cccgactcgc gctcgagcgt gacggcgaag
     8221 gtgggcgccg cgggcatgcc gggcggcatc cggtcgtcga gacggccgcg gcccgcctcg
     8281 tcggtcttga agacgcggcc gggcaagggc ttgccgccgg ctatgaacca gagctggtaa
     8341 gccttgccgg cgggcgctgg cgggaggccc gatgttatga gcaccgcgcg accggtcgag
     8401 gggtcgaagg cgacgaccgc gctcgcgccg ggcgccggcc ccttgccggc gagccgcgcc
     8461 atgcccgctc cgggcgaggc cagcatctcc cccatctcgc gggcgcgggc gagctctgcg
     8521 cgctcgcgct ctaactcttc gcgcgagcgc gcggcctcgg cgccggcgcg ggcgacctcc
     8581 gcgcgaagct ccgcgttcct ggaccagagc gcgtaactta cgacggagag cgcgaagacg
     8641 aggccgacgg cgagcgccgc gccgagcgcg aacgaggggc gcgcggcgag cagttgccag
     8701 aagccgagcc gcgaaacgaa gtcgcgcgcg cggtcggcga gcggctccgc ggcctgcgtc
     8761 gcctctacag cgggcggggc cgcctccgcc gcgggagcgc gtcgggggcc gagagcgcgc
     8821 acctgttcaa gcaaactctc gcgcaggcgc gcgggcgggg cgacgggggc aactgcgtat
     8881 gcgagccccg cggcggcgtc gtgcaacgcg tcgagctctg cgcggcactc gcggcaggag
     8941 ggcaggtgcg cgccgagcgc gcgggcctcc tccgcgtcga gcgcgcccgc ggcttcgagc
     9001 gccagcaact ctttgtaatc ttcgtgccgc atctagacct taaaaac
//
LOCUS       DASPKR010000075         3831 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_8255, whole genome shotgun sequence.
ACCESSION   DASPKR010000075 DASPKR010000000
VERSION     DASPKR010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3831)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3831
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8255"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..512
                     /locus_tag="VD968_02220"
     CDS             <1..512
                     /locus_tag="VD968_02220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13236.1"
                     /translation="ATRERSAMAALREFFSLSPLWLRVGTVTAAVAVCALAALTLLRT
                     EITWGADGFAFRTGVPERVVQTVKTVETPSRDGYTREQVDAIAEERARQQVAEAERRW
                     ERERQQEQPASANAPAPKKSAPQLQLANAAKQRRRAPSPHVARRDVRLTDDDDESLPR
                     LSDLLSDVY"
     gene            528..1055
                     /locus_tag="VD968_02225"
     CDS             528..1055
                     /locus_tag="VD968_02225"
                     /inference="COORDINATES: protein motif:HMM:NF025173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic heavy metal sensor"
                     /protein_id="HYE13237.1"
                     /translation="MLTTDATPNRGRLSVFATPALALLFLLSPAAPEARAQEGPGAET
                     PPEPALSGRPRAGRNLIMRLNLTRDQMAQLREIRRQSEQEARPLARRLRMARRALDEA
                     IYADKVDESLIEERSREVAAAQAALVRLRALTELKVRRALTAEQLQSFRELRQRARTR
                     QRLQRHMLRRPPEAP"
     gene            1178..1945
                     /locus_tag="VD968_02230"
     CDS             1178..1945
                     /locus_tag="VD968_02230"
                     /inference="COORDINATES: protein motif:HMM:TIGR00056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE13238.1"
                     /translation="MNFALRALLEVQETSLLAARAARRLFRRPAYIPEMFTQMDIIGV
                     GSLTIILLTGFFTGGVLALQTYPTLKYYGAQDQTGRLVATALVRELGPVLSGLMVAGR
                     VASAIAAELGSMVVSQQIDAMRALGTDPIRKLVAPRLIALLVTLPLITLIADAVGIFG
                     GWTVSTQLFNIGSSSFTSSAWEGLTTDDIWGGFVKSAAFALIIGTVACRQGLKTEGGT
                     VGVGRSTTTAVVMTSILIIVADFFITKALQVILGLPT"
     gene            1957..2865
                     /locus_tag="VD968_02235"
     CDS             1957..2865
                     /locus_tag="VD968_02235"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYE13239.1"
                     /translation="MATTDIEVSERGGAHGAVSGAAAESTFAEVDDRGRAVPAIEFRD
                     VHLSFDDRKILDGLSFKVQKGETKIILGGSGGGKSTTIKLILGLLKPDSGRVLVDGED
                     ITEHSEAQMMSVRKKIGMVFQEGALFDSLSVYDNVAYRLHEQGVPEEEVEQEVRRMLR
                     FVNLEDAIDKMPIELSGGMRRRVGIARALIGGPKIILFDEPTAGLDPPTSRTICELAI
                     KLRDLEDVSSIFVTHEMNNVKYLTNEYAVVNDEGEIVFEKEGERLCLINTKVLMLRDG
                     KITFQGSDEALHKSPDSYIQRFIRGY"
     gene            2949..>3831
                     /locus_tag="VD968_02240"
     CDS             2949..>3831
                     /locus_tag="VD968_02240"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HYE13240.1"
                     /translation="MPPTKKGVGLRELRVGLLIVVSVGVLIFLVLNASGDISPFSRKI
                     QLKSRFQNADGLRRGSEVRLAGVRIGKVDDVRLLPPSDRETDPKVEATFSIDSEIDGR
                     PATELIRTDSKARMGSPSILGTDKIINVNPGTAFGQPVKDGDVLATDAEASTYQELAG
                     SGNELMQQLNKLSAQFTDIAGKVNRGEGTIGRFINDEAFYNNLNTTIRDVNDVVRQIE
                     SGQGSAGRFIQDPALYNNLNNVSSSLQSIADDLRRGRGTAGRLLTDEALYNDMRTAVA
                     RFNRSADEINFIVADLRQ"
BASE COUNT          697 a         1328 c         1199 g          607 t
ORIGIN      
        1 gtgcgactcg cgagcgctcg gctatggcgg ccctgcgcga gttcttctcg ctctcgccgc
       61 tctggctgcg agtcggcacg gtcacggctg ccgtcgccgt ctgtgcgctc gccgcgctca
      121 cgctcctccg gacggaaatc acatggggcg cggacggctt cgccttccgc acgggcgtcc
      181 ccgagcgcgt cgtccagacc gtcaagacag tcgagacgcc ttcgcgggac ggctatacgc
      241 gcgagcaggt tgacgccatc gccgaggagc gcgcgcgcca gcaagtggcc gaggccgaga
      301 ggcgctggga acgggagcgg cagcaggagc agcccgcctc cgccaacgcg cccgcgccta
      361 agaagagcgc gccgcagctt caactcgcga acgccgctaa gcagcgcagg cgcgcgccct
      421 cgccgcacgt cgcgcgccgc gacgtgcggc tcacggacga tgacgacgag agcctaccgc
      481 gcctctccga ccttctcagc gacgtttact gatttcgagg tcttcgaatg ctaacgaccg
      541 acgcgacacc gaacaggggc aggctttccg tcttcgcgac gcccgccctc gcgctcctat
      601 tccttctctc ccccgccgcc ccggaggccc gcgcacagga agggccgggg gcggagacgc
      661 cgcccgagcc cgcgctctcc ggccgcccgc gcgccggccg caacctgatt atgcggctca
      721 acctcacgcg cgatcagatg gcgcagctcc gcgagatacg ccgacagagc gagcaggagg
      781 cgcgccctct cgcgcgccgc ctccggatgg cgcgccgcgc gctcgacgaa gccatctacg
      841 ccgacaaagt tgacgagtcg ctcatagagg agcgctcgcg cgaggtcgcg gccgcgcagg
      901 ccgcgctcgt gcggctacgc gccctgaccg agctaaaggt tcgccgcgcg ctcaccgccg
      961 agcagctcca atccttccgc gagctacgcc agagagcgcg cacgcgccag cgcttgcaga
     1021 ggcacatgct gcggcgcccg cccgaagccc cgtagtggct cctttttact gcttgacgcc
     1081 cccgcccctt tccgcacatc ataagcccga tagctcttag aaccgacata ggcccgcaag
     1141 acggggaggc gctccttttt caggccccga ccttttcatg aacttcgccc tgcgcgccct
     1201 gctagaggta caggaaacca gcctgcttgc ggcgcgcgcc gcgcgtaggc tattccgccg
     1261 cccggcctac atccccgaga tgttcacgca gatggacata atcggcgtgg gctcgctcac
     1321 aatcatcctg ctcacgggct tcttcacggg cggcgtgctc gcgctacaga cctaccccac
     1381 actcaaatac tacggcgcgc aggatcagac cggccggctt gtagcgacgg ccctggtgcg
     1441 cgagctcggg cccgtgctga gcgggctgat ggtggcgggc cgcgtggcgt cggcgattgc
     1501 ggccgagctg ggctcgatgg tcgtctcgca gcagattgac gcgatgcggg cgctcgggac
     1561 agaccccatc cgcaagctgg tcgcgccgcg cctcatcgcc ctgctcgtca cgctgccgct
     1621 catcacgctc atcgccgacg ccgtcggcat cttcggtggc tggactgtct cgacgcagct
     1681 cttcaacatc ggctcgagct ccttcacatc gtcggcgtgg gagggcctga cgaccgacga
     1741 catctggggc ggcttcgtca agtcggccgc cttcgcgctc ataataggga ctgtggcgtg
     1801 ccggcagggg ctgaagacag agggcggcac cgtcggcgtc ggccgctcga ccacgacggc
     1861 cgtcgtgatg acctcgatac tgataatcgt cgcggacttc tttattacga aggctcttca
     1921 ggttattctt ggcctgccga cttagaggcg cccgggatgg caacgaccga catagaggtg
     1981 agcgagcggg gaggcgcgca cggtgccgtc agcggcgccg cggccgagtc aaccttcgcc
     2041 gaggttgacg accgcgggcg cgccgtcccg gccatcgagt tccgcgacgt tcacctctca
     2101 ttcgacgacc ggaagattct cgacggcctc agcttcaagg tgcagaaggg cgagacgaag
     2161 ataatcctcg gcgggtcggg cggcgggaag tcaacgacca tcaagctcat actggggctg
     2221 ctgaagccgg actcgggccg cgtcctcgtt gacggcgagg acataaccga gcacagcgag
     2281 gcccagatga tgtccgtgcg caagaagata ggcatggtct tccaggaggg cgcgctcttc
     2341 gactcgctct ccgtctatga caacgtcgcc taccgcctgc acgagcaggg cgtccccgag
     2401 gaagaggtcg agcaggaggt gcgccgcatg ctccgcttcg ttaacctcga ggacgccata
     2461 gacaagatgc cgatagagct ctcgggcggc atgcgccggc gcgtaggcat tgcgcgcgcg
     2521 ctcatcggcg gcccgaagat aatcctcttc gacgagccga ccgcgggcct ggacccgccg
     2581 acgtcccgca caatctgcga gctggctata aagctgcgag acctcgagga cgtgtcctcc
     2641 atcttcgtca cgcacgagat gaacaacgtc aagtacctga cgaacgagta cgcggtcgtt
     2701 aacgacgagg gcgagatcgt cttcgagaag gagggcgagc ggctctgcct catcaacacc
     2761 aaagttctga tgctgcgcga cggcaagata accttccagg gctcggacga ggcgctgcac
     2821 aagtcgcccg actcctacat acagcggttc atccgcgggt actgacagaa aggagaagtg
     2881 acggtgacga gttatgagtg acgagtagat tctgtcttta taactcatca cacgtcacta
     2941 aagtttccat gcctccaacg aaaaagggcg tcggcctcag ggagctgcgc gtggggctct
     3001 tgatagtcgt ctccgtcggc gtgctcatct tcctcgtgct caacgcctct ggcgacatct
     3061 cgcccttctc gcggaagatt cagctcaagt cgcgcttcca gaatgcagac gggctgcgcc
     3121 gcggctcgga ggttaggctc gcgggcgtcc gcatcggcaa ggttgacgac gtgcggctgc
     3181 tcccgccctc ggacagggag accgacccga aggtcgaggc gaccttctcg attgacagcg
     3241 agatagacgg caggcccgcc accgagctca ttcgcaccga ctcgaaggcg cgcatgggct
     3301 cgcccagcat cctcggcacc gacaagatca tcaacgtaaa ccccggcacc gccttcggcc
     3361 agcccgtcaa ggacggcgac gtgctcgcca cagacgccga ggcgagcacc taccaggagc
     3421 ttgccggctc cggcaacgag ctgatgcagc agctcaacaa gctgtcggcg cagttcaccg
     3481 acatcgccgg caaggtcaac cgcggtgaag gcaccatcgg ccgcttcatc aacgacgagg
     3541 ccttctacaa caacctcaac accacgatac gcgacgtgaa cgacgtggtg cgccagatcg
     3601 agtcgggcca aggctcggcc ggccgcttca ttcaagaccc ggcgctctac aacaacctca
     3661 acaacgtcag ctcatctctc cagtccatcg ccgacgacct gcgccgcggc cgcggcacgg
     3721 cgggccgcct gctcacagac gaggcgctct acaacgacat gcgcactgcg gtggcgcgct
     3781 tcaaccgctc ggccgacgag ataaacttca tcgtcgcgga cctccggcag g
//
LOCUS       DASPKR010000076         6410 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_786086, whole genome shotgun sequence.
ACCESSION   DASPKR010000076 DASPKR010000000
VERSION     DASPKR010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6410)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6410
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_786086"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..259)
                     /locus_tag="VD968_02245"
     CDS             complement(<1..259)
                     /locus_tag="VD968_02245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13241.1"
                     /translation="MHRLTKLIFLTLCAFGFGTSVLAQTEQGPGALDGDGGWVVAAYV
                     GGARTAASSLSVSQPELGNDLTFEGVRFRSRSFDPPLYYGLR"
     gene            631..2646
                     /locus_tag="VD968_02250"
     CDS             631..2646
                     /locus_tag="VD968_02250"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HYE13242.1"
                     /translation="MTRSCGLIVAALGGVALVGWFVGSTALRGFRAGYIPMAPNTALV
                     FIVLGALLAALPGAAPRVATAARVGAALTAALVSARLYEYATGADMGVDGWAFSFPAE
                     RLGLAPVGKMAFFTAATFLPLSAALLLLTLPDRHRWAHDVAKALAVIVTFIGLAFSLG
                     YCYGAPLMYGGQSIPMALNTAIAFLLSGTGLLARATARDVAERRQAQAALRRAHGELE
                     ELVARRTSERDNLTYYDPLTGLPNRTLFEDRLAHALTRTDRNGQPLAVMLIGLDRFKT
                     INETLGYLTGDRVLRAVAERLTAHLRTSDTVARWGGNEFALLLTNIRRSEDAARVAES
                     IQEVLRPLFSVAGHDLCVTASIGIGVCPNDGDDPHTLLRNAGGALSQARAQGGDAYHF
                     YAAEMNAGALRRLVLENELRRAIEREEFVVHYQPRVQTGTNRVVGVEALVRWQHPERG
                     LIPPADFIPLAEETGLIVPIGEWVLRTACAQNKRWQEEGAEPLPVSVNICARQFLQQD
                     IAEVVDRALAETGLEARFLELELTESTIMADAEFAARVLGRLGERGVRASIDDFGTGY
                     SSLSYLKRLPVDTLKIDRSFIRDSVSNGDDTAIVTGVVNLAHSLRLKVVAEGVETEEQ
                     MKLLSGLECDEMQGYLFSRPLPAGEVRRILFAGREALVGRGSRAGTA"
     gene            2805..3194
                     /locus_tag="VD968_02255"
     CDS             2805..3194
                     /locus_tag="VD968_02255"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE13243.1"
                     /translation="MSQKKGSVLIVEDMAELRQLLCELLGGPYECRAVRAAEEGLEML
                     AEAEPDVIITDVKLPGMSGPEFLAEVRRRHPGVPVIVVTGGDAVLRERDFMEMGAFGY
                     LLKPYLVGEVESLVWRAVECRRGGAGR"
     gene            complement(3203..4135)
                     /locus_tag="VD968_02260"
     CDS             complement(3203..4135)
                     /locus_tag="VD968_02260"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYE13244.1"
                     /translation="MKVKPFAILRWSAAPCLSLAAAAAQLPPLDEREKNLPPRLLPAV
                     RAEHAFARASVAKGMKEAFLASAADDAVLFRAGPVNAKELWSKADPAPTALLTWFPTY
                     ADVSLAGDMAYTTGPWEIRPNPSDKEPAAAGHFVTVWRPQGDGAWKYVADIGIRHAPP
                     PPTLQGIQFPAGVRGKAKSAGGDAEPARRELAAAEERYARDSASLGAGAALLAQAAPD
                     VRLYRQGALPYVGRRAAEGALKGKTERATWQTAKMAVSSSGDLGYSYGTYEIKAAPSD
                     DKPSERGGYLRIWKKQGKAWRVVLDITNPAPASG"
     gene            complement(4132..4785)
                     /locus_tag="VD968_02265"
     CDS             complement(4132..4785)
                     /locus_tag="VD968_02265"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYE13245.1"
                     /translation="MRNPQMRAIATREDIRDLILDATDRLLSRYGYKKMTMEDLAQEV
                     GIGKGTIYLHFPSKEEVVLSHVDRIVERLKVELRQIAGGAGRPAARLRRMLLARVLYR
                     FDSVQHYTESLSDLLAALRPGLLARRRRHFEDEAEIIAVVLLEGRREGELDFRGEASA
                     TARTLLTATNALLPYSLSARELGKREDVEREASNVVQLLLEGLLSRTPGETKRSPRG"
     gene            complement(4866..5540)
                     /locus_tag="VD968_02270"
     CDS             complement(4866..5540)
                     /locus_tag="VD968_02270"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HYE13246.1"
                     /translation="MSDLIPTARTAVRRLPKRAAYDRETVYGILDEGLVCHVGFVVEG
                     QPFVIPTAYGRDGDHLYFHGAKASRMLKALSHGAELCLTVTLLDGLVLARSAFHHSMN
                     YRSVVVFGRARVVESDEEKTRALRAFTEHVVPGRWDAVRPPNKQELDATLVLALPLSE
                     ASAKVRTGPPIDDEEDYEFPVWAGVIPLRLETLGATPDPRLEKTTPLPEDLKHFDASA
                     RRLTRA"
     gene            5670..>6410
                     /locus_tag="VD968_02275"
     CDS             5670..>6410
                     /locus_tag="VD968_02275"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HYE13247.1"
                     /translation="MAKLPTSLLPAAVSLEGGAGSPLYRRLYESLRRAILAGQLKPGA
                     RLPSTRDMAAELKVSRNTVLNAFEQLLAEGYVEGQTGSGTYVSRRLPEELLNARGSER
                     RVAKRPRPGVRLSRRGEALAATSSSVSRTAEGARAFRPGSPAIDAFPFEIWSRLTARH
                     WRRPRRDLLNYGDPAGHWPLREAIAAYLGTARAVTCEPEQVIVVAGAQQGLDLTARLL
                     LDEGDAAWVEEPGYLGAKGALAAAGARLV"
BASE COUNT         1011 a         2124 c         2225 g         1050 t
ORIGIN      
        1 cgcggaggcc gtagtagagg ggagggtcga atgacctcga ccggaagcgg acaccctcga
       61 aggtcaggtc attgcctaac tccggctgcg acacggacag ggaggaagcg gccgtacgtg
      121 caccgccgac gtaagcggca actacccacc ctccgtcgcc gtcgagtgct cccgggcctt
      181 gttcggtttg cgctaacacg ctcgtaccga agccgaaggc acagagtgtg agaaaaatca
      241 gttttgttaa acggtgcatc acatccctcc gcttgctaat taagccggaa tataatggtt
      301 gtgtgaagta aagaggaagc gcctaacgct aggcaccgcc cgccgcggcc gttaacacgc
      361 ttcaccagcg tgcacgccat catgcctggt ggccgccccg ctcttcgcct ccaccacaac
      421 gaagccgtcc tcaatacgat gctcttgcgt caagggaaat gctcgcctca tcatatacag
      481 aaacattatt attgacaggc ggcgcctctg gcgcccaaaa ttaaatttac ctgccccggc
      541 gcctcacgtt cggcgagcgg agggtaatcc ctcccgcccc gccttaaatc cgtggagcct
      601 cggtccgtgg acatcaggcg ttacggaatg atgacgcggt cgtgcggcct gattgtggca
      661 gcgctcgggg gcgtcgccct ggtcggctgg ttcgtcggct ccaccgcgct taggggcttc
      721 cgcgccggct acatccccat ggcgccgaac acggcgctcg tcttcatcgt gctgggcgcg
      781 ctgctggcgg ccctgcccgg agctgccccg cgtgtggcga ccgccgcgcg cgtcggggcc
      841 gccctgacgg ccgcgctcgt ctccgcgcgc ctctacgagt acgccacggg cgccgacatg
      901 ggcgtggacg ggtgggcctt cagcttcccc gccgagcgcc tcgggctggc gccggtcggg
      961 aagatggcct tcttcaccgc cgctactttc ctgcccctga gcgcggcgct cctgctcctg
     1021 acgctccccg accggcaccg ctgggcgcac gacgtggcga aggcgctggc cgtaatcgtc
     1081 accttcatcg gcctggcgtt ctccctcggg tactgttacg gggcgccgct catgtacggc
     1141 gggcagtcca tcccgatggc gctcaacacg gccatcgcct tcctcctctc cggcaccggg
     1201 ctgctcgcca gggccacggc gcgcgacgtc gccgagcggc ggcaggcgca ggcagcgcta
     1261 cgcagagctc acggcgagct tgaagagttg gtagcgcgtc gcacgtccga gcgcgacaac
     1321 ttaacttatt acgaccctct gaccgggctg cccaaccgca cgctgttcga ggacagactc
     1381 gcccacgcgc tcacgcggac agaccgcaac gggcagccgc tggcggtcat gttaatcggc
     1441 ctcgaccgct ttaaaactat caacgaaact ctcggctacc tcaccgggga cagggtgttg
     1501 cgcgccgtcg ccgagcggct tacggcccac ctgcgtacga gtgacacggt ggcgcgctgg
     1561 ggcggcaacg agttcgcgct actgctgacg aacatccgcc gctccgagga cgccgcaagg
     1621 gtcgcggagt ccatccagga agtcctgcgc ccccttttct ccgtcgcggg ccatgacctg
     1681 tgcgtcaccg ccagcatcgg catcggcgtc tgcccgaacg acggcgacga cccgcacacg
     1741 ctcctgcgta acgccggcgg cgccctgtcg caggcccggg cgcagggagg ggacgcctac
     1801 catttttacg cggcggagat gaacgccggg gccttacggc ggctggtgct ggagaacgaa
     1861 ctgcgccggg ccatcgagcg tgaggagttt gtagtccact accagccgcg cgtgcaaacc
     1921 ggcacgaaca gggtcgtggg ggtcgaggcc ctcgtccgct ggcagcaccc cgagcggggc
     1981 ctgatcccgc cggcggactt catccccctg gccgaagaga ccggcctgat cgtccccatc
     2041 ggcgagtggg tgctgcgcac agcctgcgcg cagaacaaga ggtggcagga ggagggggcc
     2101 gagccgctgc cggtctccgt caacatctgc gcgcgccagt tcctgcaaca ggacatcgca
     2161 gaggtggtgg acagggcttt ggcggagacg gggctcgagg cgcggttcct ggagcttgag
     2221 ctgacagaga gcacaatcat ggccgacgcg gagttcgcgg cccgggtcct gggcaggctg
     2281 ggggagaggg gggtgcgtgc ttctatagac gacttcggca ccggctactc ctcgctgagt
     2341 tatctgaagc ggctgcccgt tgacacgctg aagatagacc gatccttcat ccgcgactcc
     2401 gtgagcaacg gggacgacac ggcgattgtg acgggcgttg taaaccttgc gcacagcctg
     2461 aggctgaagg tggtcgcgga gggcgtggag acggaggagc agatgaaact cctaagcggg
     2521 ttggagtgcg acgagatgca gggctacctg ttcagccgcc cgctgccggc aggagaggtg
     2581 aggcgaatac tgttcgccgg tcgggaggcg ttagtcgggc gcggctcgcg tgccgggacg
     2641 gcgtgacgct ccccacgccg gctccggcaa accgtcgtcg cccgccgccc aaggcggtat
     2701 aatcccggcg cgactcacgc tggcggcgcg cccctgcacc tcacccctat tctcacgaga
     2761 ggctaaagcg gcttcccctc gcctcacgac tcacgggggc aaagatgtca cagaagaagg
     2821 gctcagtcct tattgtcgag gatatggccg agctgcgcca actgctgtgc gagctgctgg
     2881 gagggcctta cgagtgccgg gcggttcggg cggccgagga ggggctagag atgctggcgg
     2941 aggccgagcc ggacgtgatt atcacggacg tgaagctgcc ggggatgagc ggcccggagt
     3001 tcctggccga ggtgcgaagg cgccaccccg gcgtccccgt catcgtagtg accggcggcg
     3061 acgcggtgct tagggagcgg gacttcatgg agatgggcgc gttcggctac ctgctcaagc
     3121 cgtacctcgt aggcgaggtg gaatcgcttg tgtggagggc cgtcgagtgc cgccgcggcg
     3181 gcgccggccg atgaaggaga ggctatccgg aggcgggagc ggggttggtg atgtcgagga
     3241 cgacgcgcca ggctttgccc tgcttcttcc agattcgcag gtagccgccg cgctcggacg
     3301 gcttatcgtc ggagggcgcg gccttaatct cgtaggtgcc gtaggaatag ccgaggtcgc
     3361 cggacgacga gaccgccatc ttcgccgtct gccacgtcgc gcgctcggtc tttcccttga
     3421 gcgccccttc ggccgctcgc cggccgacgt aaggcagcgc gccctgccgg tagagcctca
     3481 cgtcgggcgc ggcctgcgcg agcagggccg cccccgcacc gagcgacgca gagtctctcg
     3541 cgtacctttc ttcggcagcc gccagctcgc gccgcgcggg ctccgcgtcg ccgcccgccg
     3601 acttcgcctt gccgcgaacg cccgccggga actggatgcc ctggagcgtg ggcggcggcg
     3661 gggcgtgtcg gatgccgatg tcggcgacgt acttccaggc gccgtctcct tgcgggcgcc
     3721 atacggtgac gaagtggccc gcggcggcgg gctccttgtc cgaagggttc gggcgtatct
     3781 cccaggggcc tgtcgtgtag gccatgtcgc ccgcgagtga aacgtccgcg taggtcggga
     3841 accacgtgag caaagcagtc ggcgccgggt ctgccttcga ccagagctct ttggcgttca
     3901 caggccccgc gcggaagagc acggcgtcgt ccgcggccga ggcgaggaag gcttccttca
     3961 tgcccttcgc gaccgaagct cttgcgaagg cgtgctcggc gcggacggct ggcaggagtc
     4021 gcgggggaag gttcttctcc ctctcgtcga gcggcgggag ctgagccgct gccgccgcga
     4081 gcgaaaggca aggcgccgcc gaccagcgca ggattgcgaa cggctttacc ttcatcccct
     4141 tgggctcctc ttcgtctcgc cgggcgtcct cgacaggagc ccttcgagca gcagttggac
     4201 gacgttggaa gcctcgcgct ccacgtcttc gcgcttgccc agctcccgcg cgctcaggct
     4261 gtagggcagc agcgcgttcg tggccgtgag cagcgtgcgc gcggtcgcag aggcttcgcc
     4321 gcggaagtcg agctcgccct cgcgccggcc ttcgagcagg acgacggcga tgatttcggc
     4381 ctcgtcctcg aagtggcggc gccgtcgcgc gagcaagccc ggccgcagcg ccgccagcag
     4441 gtcactcaag ctctccgtgt agtgctgaac gctgtcgaag cggtagagca cccgcgcgag
     4501 gagcatccgg cgcaggcgcg ctgcgggcct gcccgcgccg cccgctatct gcctcaactc
     4561 gaccttgagc cgctcgacga tgcggtcaac gtgcgagagg acgacctcct cctttgaggg
     4621 gaagtgcagg tagatcgtcc ccttgccgat gccgacctcc tgcgccaggt cttccatcgt
     4681 catcttcttg tagccgtagc gcgagagcag ccggtctgtg gcgtcaagta tcaggtcgcg
     4741 tatgtcttcg cgcgtcgcaa tcgctcgcat ttgggggttt cgcacggctc cgtgaccgga
     4801 atcgaatttc ggtcaggagt atgcggcccg agaggacggg ctgtcaacga aatcgcgggc
     4861 ggaagttaag ccctcgtgag gcggcgggcg gaggcgtcga agtgcttgag gtcttcgggc
     4921 aggggggtcg tcttctcgag ccgagggtcg ggggtggcgc cgagcgtctc caaacgcagc
     4981 gggatgacgc cggcccagac gggaaactcg tagtcctcct cgtcgtctat gggcggcccc
     5041 gtccggactt tggccgaggc ttccgaaagc gggagcgcga gcacgagcgt cgcgtcaagc
     5101 tcctgcttgt tcggtggccg caccgcgtcc cagcggcccg gcacgacgtg ctcggtgaaa
     5161 gcgcggagcg cgcgcgtctt ctcctcgtcc gactcgacaa cgcgcgctcg gccgaagacg
     5221 acgactgacc tgtagttcat cgaatggtgg aaagcggagc gcgcgagcac gaggccgtcg
     5281 aggagcgtta cggtcaggca aagctccgcg ccgtggctca gcgccttcag catgcggctg
     5341 gccttcgcgc cgtggaagta gagatgatcg ccgtcgcgcc cgtaggcggt cgggatgacg
     5401 aacggttgcc cctcgacaac gaagccgacg tggcagacga gcccctcgtc cagaatccca
     5461 tagacggtct cgcggtcgta agccgcgcgc ttgggcagac gacggacggc ggtgcgcgct
     5521 gtcgggatga gatcgctcat aaaggtctcg aacctcctcg gcgcaaggca tacttgcccc
     5581 gcgacgccgt gaacgctaac acgaattggc acggcctcaa gctccatttt agctgttcac
     5641 ggggggccaa tctcttttac catgtcggca tggcaaagct cccaacatcg ctcctgcctg
     5701 cggccgtctc gctcgaaggc ggcgcgggct cgccgctata ccggaggctc tacgagagcc
     5761 tgcggcgcgc tatcctggca ggccaactta agccgggcgc gcgcctgccc tcgacgcgcg
     5821 acatggccgc ggagttgaag gtctcgcgaa acactgtgct gaacgccttc gagcaactgc
     5881 tggccgaagg ctacgtcgag gggcagacgg gctcggggac atacgtctcg cgcaggctcc
     5941 ccgaggagct gctcaacgcc cgcggctcgg agcgtcgggt ggcgaagagg ccgcgccctg
     6001 gcgtcaggct ctcgcgccgc ggcgaggcgt tagcggcgac gagctcgagc gtctcgcgga
     6061 cggcggaagg cgcgcgcgcc ttccgcccgg gctcgcccgc gattgacgca ttccccttcg
     6121 agatttggtc gcggctgacg gcgcgccact ggcggcggcc tcgtcgagac ctgctcaact
     6181 atggcgaccc ggccggccac tggcctctgc gcgaagcgat tgcggcctac ctcggcacgg
     6241 cgcgcgccgt cacgtgcgag ccggagcagg tcatagtcgt ggcgggcgcg cagcaggggc
     6301 tcgatcttac ggcgcggctg ctgctcgacg agggcgacgc cgcgtgggtg gaagagccgg
     6361 gctacctcgg cgcgaaaggc gcgctcgccg cggccggcgc gcgactcgtc
//
LOCUS       DASPKR010000077         5963 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_915350, whole genome shotgun sequence.
ACCESSION   DASPKR010000077 DASPKR010000000
VERSION     DASPKR010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5963)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5963
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_915350"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1614
                     /gene="recG"
                     /locus_tag="VD968_02280"
     CDS             <1..1614
                     /gene="recG"
                     /locus_tag="VD968_02280"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF008168.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HYE13248.1"
                     /translation="TKRLREIMHALLARLDDSAFRETLPPELIERQRLAARADATRRI
                     HFPAEDVPLADYERARSPAHLRLIFEEFFWVAVAIALRKDERVKEPKGAVIEITEGMR
                     RRMLSVLPFTLTGAQERAVNRILEDMQSDVPMNRLLQGDVGSGKTAVALLAMLAAMEN
                     GYQAALMAPTEILAEQHARNVKRALAPTPYRVELLVGSLKASEKRRLHKDLASGEIAA
                     AVGTHALIQEAVSFSKLGLVVIDEQHRFGVLQRAALRERGFNPDVLVMTATPIPRSLA
                     MTVYGDLDVSVIDELPPGRTPVKTVVVGEDKRAGVYKGIEREVRAGRQVYVVYPLVEE
                     SEKMDLKDATRMFEHLRDRVFPQFAIGLLHGKMKPSEKEEVMRRFVAGEIHVLVATTV
                     VEVGVDVPNASVMVVEHAERFGLSQLHQLRGRVGRGAEQSYCVLVASDKQTAVARERL
                     GIMEETSDGFRIAEKDLEIRGPGEVMGTRQSGVPTFRVGNLVRDLQILEEARREAEHY
                     LTARRNTRETSLLIERVRADARFGLAAIG"
     gene            1632..2231
                     /gene="rsmD"
                     /locus_tag="VD968_02285"
     CDS             1632..2231
                     /gene="rsmD"
                     /locus_tag="VD968_02285"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: protein motif:HMM:TIGR00095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HYE13249.1"
                     /translation="MIYICLVRVIAGQYRGRVLKNPQGLQARPTSDRLRETLFNVLAP
                     RLEGARFLDLCAGTGAIGIEALSRGASFVTFVDRVHKMCALVEENLDLLGVPEEMTEV
                     VKSDAAEYLKRTVKGGGQDWRGGSEPWDIVYFDPPYASDYLAVIREFARHTAPLLRAA
                     GLLVVEHHHKNALPDSLGGIRRWRVLKQSDSALSFFEAA"
     gene            2234..2635
                     /locus_tag="VD968_02290"
     CDS             2234..2635
                     /locus_tag="VD968_02290"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HYE13250.1"
                     /translation="MTEPKGRERRLKPRFSATLPCAVELPDEARDILFPGERMQCRTR
                     DLSESGVGLVAPSIYVGYACVVDEGRALKLTIELPDGPVVLGTTAAHYLRAGGGETDG
                     YLIGMRITSASDEHRARYVAYLETLNAAEQG"
     gene            2751..3917
                     /locus_tag="VD968_02295"
     CDS             2751..3917
                     /locus_tag="VD968_02295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13251.1"
                     /translation="MIHTLKCPSCSAPLDYEDESDKASIRCPFCENRVVVPDSMRRTG
                     PQVHVHSFSTGRRPPVIKVHPVATLVIVGGILAVVGAIIYSVTRTIANVASAVPSVPS
                     APRPALPAPPRPEPKPTPAGFASTVMEFGSEGIGPGMFKDARSIAVDGEGRIYVGEYT
                     GGRVQVFDAAGKFLTQWMVDPKMPLRDLAADRRGTVYVAQSGKIHRYEGPTGRPLGEM
                     QHPHAGFDSLFTTPDGGLLAAAYRGGQDDIVRFDSSGNATKTIRKAFSDYNDHTEMDM
                     NVAEDGEGNVYVLGFFNSAVLKFSPQGRFVNKFGGQGEEPGLFRSPRSIAVDGLGRVY
                     VSDTKGIQVFDPNGRYLDVFEPANVTFGMVFNDKNELFIAARTKVIKCALNNKK"
     gene            3940..5016
                     /gene="tsaD"
                     /locus_tag="VD968_02300"
     CDS             3940..5016
                     /gene="tsaD"
                     /locus_tag="VD968_02300"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HYE13252.1"
                     /translation="MLVLGVESSCDETAAALVRDGREMVSSVISSQIETHKRFGGVVP
                     ELASREHLDKIVTVVEEAFSRAGVAKEEIDGVAVTQGPGLVGSLLVGLSYAKAMAYAL
                     EKPFVGVNHIEGHIYSVVFDNPPIEYPAFALIVSGGHTNLFLVPEPGKYRVLARTRDD
                     AAGEAYDKVAKMLGLGYPGGPVIERLAREGDPRAVRFSVPRMGDGRPDFSFSGLKTAV
                     SKHVRETGLRPVAPGEEPSQAVKDLAASFQDVVIRSLVGTTERLAEEHRPRTLIVAGG
                     VACNMALRAASAEAGARLGVPAYFPSRHLSTDNAAMIAAAGTVKLQAGERAGLDLNAD
                     VSLRLQNMGLEADAAGRGRARYRL"
     gene            complement(5146..5496)
                     /locus_tag="VD968_02305"
     CDS             complement(5146..5496)
                     /locus_tag="VD968_02305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13253.1"
                     /translation="MRRRNLALAFAFILAVCHAPAFAAGTGEEDTDTLKVGAKVVEVN
                     DHHISVIARTGVEHVIATDDAATVVKLKGKRVSLKDLRVGDVVTVELDEKKQVKFARN
                     VTIAVRDGSTLASN"
     gene            complement(5762..>5963)
                     /locus_tag="VD968_02310"
     CDS             complement(5762..>5963)
                     /locus_tag="VD968_02310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13254.1"
                     /translation="TVFRLKGHGMPALGGRGRGDLFVSVTLVTPTTLTREQRRLLEQL
                     AEIEEKDLGDKGLMDKVRDIFG"
BASE COUNT          997 a         2066 c         1963 g          937 t
ORIGIN      
        1 acgaagcgcc tgcgcgagat tatgcacgcg ctgctcgcga ggctcgacga ctcggccttc
       61 agggagactc tcccgcccga gctgatagag cggcagcggc tcgcggcccg cgccgacgcc
      121 acgcggcgca tacactttcc cgccgaggac gtgccgctcg ccgactacga gcgcgcgcgc
      181 agccccgcgc acctacgcct catcttcgag gagttcttct gggtcgccgt cgccatcgcc
      241 ctgcgaaagg acgagcgcgt caaggagcct aagggcgcgg tcatcgagat aacagagggg
      301 atgcgccgcc gcatgctctc ggtgctgccc ttcacgctga cgggagcgca ggagcgcgcg
      361 gtcaaccgca tactcgaaga catgcagtcg gacgttccca tgaaccggct gctacagggc
      421 gacgtgggaa gcggcaagac ggccgtcgcc ctgctcgcca tgctggccgc gatggagaac
      481 ggctaccagg cggcgctcat ggcgccgacc gagattctcg ccgagcagca cgcccggaac
      541 gtcaagcgcg cgctcgcgcc gacgccctac cgcgtagagc ttctggtcgg ctcattgaag
      601 gcgagcgaga agcgccggct ccacaaagac ctcgcctccg gcgagatcgc agcggccgta
      661 ggcacgcacg cgctcataca ggaggcggta tcgttctcca aactcggcct cgtcgttata
      721 gacgagcaac accgcttcgg cgtcctacag cgcgcggccc ttcgcgagcg cggcttcaac
      781 cccgacgtgc tggtgatgac ggcaacgccc atcccgcgct cgctcgccat gaccgtctat
      841 ggcgacctgg acgtgtccgt catagacgag ctgccgccgg gccgcacgcc cgtcaagacc
      901 gttgtggtcg gcgaggacaa gcgggccggc gtctataagg gcatcgagcg cgaggtgcgc
      961 gcgggccgcc aggtctatgt cgtctatcct ctggtcgagg agtcggagaa gatggacttg
     1021 aaggacgcga cgcgcatgtt cgagcacctg cgcgaccgcg tcttcccgca gttcgcgata
     1081 gggcttttgc acggcaagat gaagccctcg gagaaggagg aggtcatgcg ccgcttcgtc
     1141 gcgggggaga ttcacgtgct cgtggcgacg accgtggtcg aggtcggcgt tgacgtgccg
     1201 aacgcctccg tgatggtcgt cgagcacgca gagcgcttcg gcctctcgca gctccaccag
     1261 ctccgcgggc gcgtcgggcg cggcgccgag cagtcctact gcgtcctcgt cgcctccgac
     1321 aagcagacgg ccgtggcgcg cgagcggctc ggcatcatgg aggagacttc ggacggcttc
     1381 cgcatcgccg agaaagacct cgaaatccgc ggccccggcg aggtgatggg cactcgccag
     1441 tccggcgtcc cgacgttccg cgtcggcaac ttggtgcgcg acctgcagat tctcgaagag
     1501 gctcggcgcg aggccgagca ctacctcacc gcgcgccgca acacgcgcga gacttccctc
     1561 ctcatcgagc gcgtccgcgc cgacgcgcgc ttcggcctcg cggccatcgg ctagcgacga
     1621 aattatccct tttgatttat atttgtctgg tgagggtcat agcgggacag tacaggggga
     1681 gggttctgaa aaacccgcag gggttgcagg cgcggcccac gtcggaccgg ctgcgcgaga
     1741 cgctcttcaa cgtgctggcg ccgcgcctcg aaggcgcgcg gttcctcgac ctgtgcgccg
     1801 gcacaggcgc cataggcatc gaggctctgt cgcgcggcgc gtccttcgtc accttcgttg
     1861 accgcgttca caagatgtgc gcgctcgtag aggagaacct cgacttgctc ggcgtccccg
     1921 aagagatgac ggaggtcgtc aagagcgatg ccgcggagta cctgaagaga accgtgaagg
     1981 ggggcgggca ggactggcgc ggcggctcag agccctggga catcgtttac ttcgatcccc
     2041 cttacgcgtc ggactacctg gcggtcataa gggagttcgc gcggcacacg gccccgctgt
     2101 tgcgagcagc ggggctgctc gtcgtcgagc accaccacaa gaacgcgctt cccgactctt
     2161 tgggcggcat acgccgctgg cgcgtgctca agcagagcga ctcggcgctc agctttttcg
     2221 aggcggcctg agcatgacgg aacctaaagg gagggagcga cgacttaagc cgcgcttctc
     2281 ggcaaccctg ccgtgcgcgg tcgagctgcc cgacgaggcg cgcgacatac tcttccccgg
     2341 cgagcgcatg cagtgccgca cgcgcgacct gagcgagagc ggcgtcggcc tagtcgcgcc
     2401 ctccatctac gtcggctacg cctgcgtcgt tgacgagggc cgcgcgctca agctcaccat
     2461 cgagctgccg gacggccccg tcgtgctggg gacgacggcc gcgcactacc tacgcgcggg
     2521 cggcggcgag acggacggct acctcatcgg aatgcgcatc acctccgcca gcgacgagca
     2581 ccgcgcacgc tacgtcgcat acctcgaaac cttaaacgcc gccgagcagg gctgaggccg
     2641 cccgcgctcg ggtggcacag cccctgctcg cccccgccac ggagccgccg ccccgcgtgt
     2701 tctgcatcgc ccccctcctg cgatagaatg tcgcccgaga gagagcgcat atgattcaca
     2761 cactcaaatg cccttcctgc tcggcgccgc tcgactacga ggacgagagc gacaaggctt
     2821 ccatacgctg cccgttctgc gagaaccgcg tggtcgtccc cgactcgatg cgccgcaccg
     2881 ggccgcaagt ccacgtccac tcgttctcga cgggccgccg cccgcccgtc ataaaggttc
     2941 acccggtcgc cacgctcgtc atcgtcggcg ggatactggc cgtcgtcggc gcgataatct
     3001 actccgtcac gcgcaccatc gcgaacgtcg cgagcgccgt gccgagcgtg ccgtctgcgc
     3061 cgcgcccggc cctgcccgcc ccgccgcggc ccgagccgaa gccgacgccc gcgggcttcg
     3121 ccagcaccgt catggagttc ggcagcgagg gcatagggcc ggggatgttc aaggacgcgc
     3181 gctcaatcgc cgttgacggc gaggggcgca tatacgtcgg ggagtacacg ggcgggcgcg
     3241 tgcaggtctt cgacgccgcg ggcaagttcc tgacgcagtg gatggttgac ccgaagatgc
     3301 cgctgcgcga cctcgcggcc gaccgccgcg gcaccgtcta tgtcgcgcag agcgggaaga
     3361 ttcaccgcta cgaaggcccg accggcagac cgctcggcga gatgcagcac ccgcacgccg
     3421 gcttcgacag cctgttcacg acgcccgacg gcgggctgct cgccgctgcg taccgcggcg
     3481 ggcaggacga catagtgcgc ttcgactcct cgggcaacgc cacgaagacc atacgcaagg
     3541 cgttcagcga ctacaacgac cacaccgaga tggatatgaa cgtcgccgag gacggcgagg
     3601 gcaacgtcta tgtgctcggc ttcttcaact ccgcggtgct caagttctcg ccgcagggcc
     3661 gcttcgtcaa caagttcggc gggcaggggg aggagccggg cctcttccgc tcgccgcgct
     3721 cgatagccgt tgacgggctg gggcgcgtct atgtgagcga cacgaagggg atacaggtct
     3781 tcgacccgaa cggccgctac ctcgacgtgt tcgagccggc caacgtcacc ttcggcatgg
     3841 tcttcaacga caagaacgag ctgttcatcg ccgcccgcac gaaggtcatc aagtgcgcgc
     3901 taaacaacaa gaagtagtaa cagggggggg aagtcttaga tgcttgtgct cggcgttgaa
     3961 agctcctgcg acgagacggc ggcggcgctc gtgcgcgacg gccgcgagat ggtctcgtca
     4021 gtcatctcgt cgcagataga gacgcacaaa cgcttcggcg gcgtggtgcc ggaactcgcc
     4081 tcgcgcgagc acctcgacaa gatagtgacg gtcgtcgagg aggcgttctc gcgcgccggc
     4141 gtcgcgaagg aggagattga cggcgtcgcc gtcacgcagg ggccggggct cgtcgggtcg
     4201 ctcctcgtcg ggctctccta cgcgaaggcg atggcctacg cgctcgaaaa gcccttcgta
     4261 ggcgtcaacc acatcgaggg ccacatctac tctgtagtct tcgacaaccc gccgattgag
     4321 tacccggcct tcgcgctcat agtctccggc gggcacacga acctcttcct cgtcccggag
     4381 ccgggcaagt accgcgtgct cgcccgcacg cgcgacgacg cggccggcga ggcttacgac
     4441 aaggtcgcga agatgctggg cctcggctac cccggcggcc ccgtcatcga gcggctcgcg
     4501 cgcgagggcg acccgcgcgc cgtgcgcttc agcgtcccgc gcatgggcga cggccgcccc
     4561 gacttcagct tcagcggtct gaagacggcc gtctcgaagc acgtccgcga gaccggcctg
     4621 cggcccgtcg cgcccggcga agagccctcg caggccgtca aagacctcgc ggcaagcttt
     4681 caggacgtgg tcatccgctc gctcgtcggc acgacagagc ggctggccga agagcaccgg
     4741 cctcgcaccc tcatcgtggc gggcggggtc gcgtgcaaca tggccctgcg cgccgcgtcc
     4801 gcggaggcgg gcgctcgcct cggcgtcccc gcctacttcc cctcccggca cctttccaca
     4861 gacaacgcgg cgatgatcgc cgccgccggc accgtcaagc tacaggcagg cgagcgagcc
     4921 gggctcgact taaacgccga cgtgtcgcta cggcttcaga acatgggttt ggaggctgac
     4981 gcagccgggc gcggccgcgc ccgctacagg ctttagaagg aggggcgccg gagaatcgaa
     5041 agccgcccgg cttcgctagg agcgagggag ccgggcggct tcgctttgcc ggccgacgtt
     5101 caggcgccgg tcggctaaat tgttcgcggc atcgggcgcg ccagcctagt tcgacgcgag
     5161 agtgctgccg tcccgaaccg cgatggttac gttgcgggcg aacttgacct gcttcttctc
     5221 gtccagctcg accgtaacga catcccccac gcgcaggtct ttgagagaga ctcgcttgcc
     5281 cttgagtttc accaccgtcg cagcgtcgtc cgtcgcgatc acgtgctcta cgcccgtgcg
     5341 cgcgatcacg gatatgtggt ggtcgttcac ctcgaccacc ttcgcgccca ccttgagcgt
     5401 gtccgtgtcc tcttcgcccg tcccggccgc gaaggccggg gcgtgacaga ccgccagaat
     5461 aaacgcaaac gctaacgcga ggtttcttcg tctcatccct ttgtcctacg cctttcgcag
     5521 gatttacgca cggagcctca cggcaaccca catgccgcgg ccgcgcgccc gggctcaggc
     5581 gcgcgaatta cgcggtaact gcgccacgcg cgcccctgcg acgcacctcc tcccgtgact
     5641 cgcttcgcgc tatccgtaca gaaacgggcg tttcgtatcg gtacaattcg cgcccggcgg
     5701 ggcgcaaaaa aggccgcgcc aaccggcgcg gccttcgtct ctgaatcgcc cttgtagggc
     5761 tttagccgaa gatgtcgcga accttgtcca tgagcccctt gtcgcccaaa tccttctcct
     5821 caatctcggc gagctgttcg agcaggcggc gctgctcgcg cgtgagcgtc gtgggggtaa
     5881 cgagcgtgac ggagacgaag aggtcgccgc ggccccggcc gccgagcgcg ggcatgccgt
     5941 gacctttgag gcggaagacc gtg
//
LOCUS       DASPKR010000078         3868 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_915367, whole genome shotgun sequence.
ACCESSION   DASPKR010000078 DASPKR010000000
VERSION     DASPKR010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3868)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3868
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_915367"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1523)
                     /locus_tag="VD968_02315"
     CDS             complement(<1..1523)
                     /locus_tag="VD968_02315"
                     /inference="COORDINATES: protein motif:HMM:NF012906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13255.1"
                     /translation="MRVSLLKAVCLLALAACAAHAQPRAAAGGRAPKTVVALHDGWKF
                     RQAGGTDWREAAVPGCVHTDLLRHRLIEDPFYRDNERKLQWIGKTDWEYETTFRAGPA
                     LLARRNVELVFEGLDTYATVTLNGVRLLEADNMFRTWRVGARGALKEGENTLRVVFRS
                     PINEVLPRMKTLGHELPASNDQGEKTSPHTRKAPYQYGWDWGPRFVTSGVWKPVRLEA
                     WDDARIESLRVAQKRLDDRLATLTVEAEVVSSADAEATLHVEAHAGGRAAASARERVK
                     LRSGTQRVSVTLNITSPRRWWPAGLGPQNLYTVSARLAIGGNAVDEAATRVGLRTLEL
                     RQKPDEWGKSFEFVVNGVPVFARGGNWIPADSFPTRVTRERYRELLTSARDANMNMLR
                     VWGGGIYEADDFYDLCDELGLLVWQDFMFACSMYPGDREFLDNVRAEAVDNIKRLRNH
                     PSIVLWCGNNEVETAWQHWGWKQSLPAKLWDDYLKLFHGVLPEAVAEHDPSRPYWPSS
                     "
     gene            1701..3818
                     /locus_tag="VD968_02320"
     CDS             1701..3818
                     /locus_tag="VD968_02320"
                     /inference="COORDINATES: protein motif:HMM:NF012931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 20 glycosylhydrolase"
                     /protein_id="HYE13256.1"
                     /translation="MILRTAATLLILLLCAAPSRARQTAGGHNLMPVPASVEFGAGRL
                     PVTKSFTVAARGHTDERLRAGVERALRRLEGRTVMELARGLAPDAASAALVVECRAPG
                     AAVPSLGEDESYTLDVSERQAVLSAPTVVGALRGLETFLQLVGGDRGGFFVPAVRVRD
                     RPRFPWRGLMIDIARHYQPPEVLKRNLDAMAAVKLNVLHWHLTEDQGFRVESKKFPRL
                     HLLGSDGLFYTQEQVRDIIAYARERGIRVVPEFDIPGHATAWLVGHPELGSAPGPYTI
                     ERRPGIFEPALDPTREEVYKFLDAFLGEMAALFPDAYMHIGGDENEGKQWDRNPRIQA
                     FMKAKGIKDNHALQTYFNQRVLAILKKHGKRMMGWDEIFQPDLPKDVVIHSWRGQTAL
                     AEAARRGYDGVLSNGYYIDLMFPASQHYLNDPVPAGSTLTPSEAAHVLGGEATMWSEW
                     VTPETIDSRIWPRTAAIAERLWSPREVRDVEDMYRRLAVVSARLEELGLEHERNQAVM
                     LRRLAGGRESRSLETLASLVEPVKEYRRYQQRPQTMLSPLTGLVDAARADSGAARRFA
                     SLVDEMLADAPRFESRSAELHRELSAWRDAASELEAVMDGSPALHEARPLADDLSALG
                     AAGLEALSYLSRGVTAPPEWREARLAALEQAAKPKAAVELAVVGAVRQLVAAAAELER
                     LGAMTPAEWNRHVRAAASPPPAK"
BASE COUNT          575 a         1374 c         1320 g          599 t
ORIGIN      
        1 gagctgggcc agtagggcct cgaagggtcg tgctcggcga ccgcctcggg cagcacgccg
       61 tggaagagtt tcaggtagtc gtcccagagc ttcgcgggga ggctctgctt ccagccccag
      121 tgctgccagg cggtctcgac ctcgttgtta ccgcaccaga gcacgatgct cgggtggttc
      181 cgcagccgct tgatgttatc cacggcctcg gcgcgcacgt tgtccagaaa ctcacggtct
      241 ccggggtaca tgctgcacgc gaacatgaag tcctgccaga cgagcagccc gagctcgtcg
      301 cacaggtcgt agaagtcatc ggcctcgtaa atccctccgc cccagacgcg cagcatgttc
      361 atgttggcgt cgcgcgccga agtcagaagc tcgcggtagc gctcgcgcgt gacgcgcgtg
      421 ggaaagctgt ccgccggaat ccagttgccg cccctcgcga agacgggcac gccgttgacg
      481 acgaactcga agctcttccc ccactcgtcc ggcttctgcc gaagttcgag cgtgcgcagg
      541 ccgacgcgag tcgcggcctc gtcaacggcg ttgccgccga ttgcgagccg cgcgctcacc
      601 gtgtagaggt tctgcggccc gagccccgcg ggccaccagc gccgcgggct cgtgatgttg
      661 agcgtgacgg agacgcgctg cgtgccgctt ctgagcttga ctcgctcgcg cgccgaggcc
      721 gcggcgcgcc cgccggcgtg agcctcgacg tggagcgtcg cctccgcgtc ggcggaagag
      781 acgacctcgg cctcgacggt cagggtcgcc agcctgtcgt cgagccgctt ctgcgcgacg
      841 cgcaggctct cgatgcgcgc gtcgtcccac gcctccaacc tgaccggctt ccagacgccg
      901 ctcgtcacga agcgcggccc ccagtcccag ccgtactgat aaggcgcctt gcgcgtgtgc
      961 gggctggtct tctcgccctg atcgttgctc gcgggaagct cgtgcccgag cgtcttcatg
     1021 cgcggcaaca cttcgttgat gggcgagcgg aagaccacgc gcagggtgtt ttcaccttcc
     1081 ttcaaggcgc cgcgcgcccc cacgcgccac gtgcggaaca tgttgtcggc ttcgagcagc
     1141 cgaacgccgt tcagcgtcac ggtcgcgtag gtgtccaagc cctcgaagac cagctcgacg
     1201 ttgcggcgcg cgaggagggc ggggccggcg cggaaggtcg tctcgtattc ccagtcggtc
     1261 tttccgatcc actggagctt ccgctcgttg tcgcggtaga aggggtcttc gattagacgg
     1321 tggcggagca ggtctgtgtg cacgcagccg ggcacggcgg cctcgcgcca gtccgtgccg
     1381 cccgcctgac ggaacttcca gccgtcgtgc agcgcgacga ccgtcttggg ggcgcgcccg
     1441 ccagcagccg cgcgcggctg cgcgtgggcg gcgcaggccg cgagcgcgag aaggcacacc
     1501 gctttgagga gggaaactct catgcgccga ttgctttact tttaccggcg ttaattctgt
     1561 aacctcaagt atgacaccgt aacttacgcc gcgccgcccc gtttccgggc gagactgccg
     1621 tcgccgggcc cggccgcccg gcaagccaaa atcacaggct cgcacaactt tcgcactccg
     1681 acgcagccgc gagggctcgt atgatactgc gcacagccgc cacgctcctt attttactgc
     1741 tctgcgccgc gccgtcgcgc gcgcgccaaa ccgccggggg tcacaacctg atgccggtgc
     1801 cggcgtccgt cgagttcggc gcggggcgcc tgcccgtcac gaagtcgttc actgtggccg
     1861 cgcggggcca cacggacgag cgcctgcgcg ccggcgtcga gcgcgccctg cgcaggctcg
     1921 aaggccgcac cgtcatggag ctcgcgcgag ggctggcgcc ggacgcggcc tcggcagcgc
     1981 tcgtcgtcga gtgccgcgct ccgggcgccg ccgtgccttc gttgggcgag gacgaatcct
     2041 acacgctcga cgtgagcgag cgtcaggccg tgctctcggc cccgaccgtc gtgggcgccc
     2101 tccgcgggct cgaaaccttc ctgcaactcg tcgggggcga ccgcggcggc ttcttcgtgc
     2161 ccgcggtgcg cgtgcgcgac cggccgcgct tcccctggcg cgggctcatg atagacatcg
     2221 cgcgccacta ccagccgccc gaagtcctca agcgcaacct cgacgcgatg gccgccgtca
     2281 agctcaacgt cctgcactgg catttgacgg aagatcaggg cttccgcgtc gagagcaaga
     2341 agttcccgcg cctgcacctg ctcggctccg acggcctctt ctacacgcag gagcaggtgc
     2401 gagacatcat cgcctacgcg cgcgagcgcg gcataagggt cgtgcctgag ttcgacatcc
     2461 ccggccacgc gaccgcgtgg ctcgtcggcc acccggagtt ggggagcgcg cccggccctt
     2521 acaccatcga gcgccgcccc ggcatattcg agcccgcctt agacccgacg cgcgaggagg
     2581 tctataagtt cctcgacgcc ttcctcggcg agatggcggc gctcttcccc gacgcctaca
     2641 tgcacatcgg cggcgacgag aacgagggca agcagtggga caggaacccg cggattcagg
     2701 ctttcatgaa ggccaaaggc atcaaggaca accacgccct tcagacctac ttcaaccagc
     2761 gcgtgctcgc catcctcaag aagcacggca agcgcatgat gggctgggac gaaatcttcc
     2821 agcccgacct gccaaaggac gtggtcatac actcctggcg cgggcagacg gcgctcgccg
     2881 aggcggcgcg gcgcggctac gacggcgtgc tctcgaacgg ctactacatt gacctcatgt
     2941 tccccgcgtc gcagcactac ctgaacgacc ccgtgccggc cggctcgacg ctcacgccct
     3001 cggaggcggc gcacgtcctc ggcggcgagg cgacgatgtg gagcgagtgg gtcacgcccg
     3061 agacgattga ctcgcgcatc tggccgcgca cggcggccat cgccgagcgc ctctggtccc
     3121 cgcgtgaggt cagggacgtg gaggacatgt accggcggct cgccgtcgtg agcgcgcggc
     3181 tggaggagct agggcttgag cacgagcgga atcaggcggt gatgctgcgc aggctagcgg
     3241 gcgggcgcga gtcgcgctct ctcgaaacgc ttgcctccct cgtcgagccc gtaaaggagt
     3301 acaggcgcta ccagcagcgc ccgcagacga tgctctcgcc gctcacgggg ctcgttgacg
     3361 cggcgcgggc ggacagcggg gccgcgcgcc gcttcgcatc gctggtggac gaaatgcttg
     3421 ccgacgcccc gcgcttcgag tcgcgctcgg cggagcttca ccgcgagctg tccgcgtggc
     3481 gcgacgcggc ctcggagctt gaggccgtca tggacggctc gcccgcgctc cacgaggcgc
     3541 gcccgctcgc cgacgacttg tcggcgctcg gcgcggccgg cctggaagcg ctctcctacc
     3601 tttcgcgcgg ggtgacggcg ccgcccgagt ggcgcgaggc gcggctcgcc gcccttgagc
     3661 aggcagcgaa gccgaaggcg gccgtcgagc tcgccgtcgt cggcgccgta cggcagctcg
     3721 tcgcggccgc ggccgaatta gagcggctcg gcgcgatgac gccggccgag tggaacaggc
     3781 acgtcagggc cgccgcgtcg ccgccccccg cgaagtgagc gcgggccgcg gcctgtaagg
     3841 gagcgaggcc gtcaagccct tgccttgc
//
LOCUS       DASPKR010000079         7438 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1303722, whole genome shotgun sequence.
ACCESSION   DASPKR010000079 DASPKR010000000
VERSION     DASPKR010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7438)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7438
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1303722"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..317
                     /locus_tag="VD968_02325"
     CDS             <1..317
                     /locus_tag="VD968_02325"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HYE13257.1"
                     /translation="GPFETIAQETGAKDSAIVRRSDVWIAPGHNSVFKDDAGQDWIAY
                     HAINVRRPYVSDAIGGDRSVRRVMLIDRLEYRDGWPRVEAGSPSKGRVKGPAMNRPAG
                     TR"
     gene            325..2166
                     /locus_tag="VD968_02330"
     CDS             325..2166
                     /locus_tag="VD968_02330"
                     /inference="COORDINATES: protein motif:HMM:NF014850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HYE13258.1"
                     /translation="MKNLRQTLRRLAALAACAVLLAGAAMAQAVPRPEHPRPDFVRAD
                     WQTLNGTWEFEFDDANRGLAERWFEPSTGKRFSKTIVVPFAFQSRMSGIGDTSFHDVV
                     WYRRALNVPENFLRDGRRVTLNFGAVDYEAEVWVNGLHAGSHRGGHVGFSFDITDLLK
                     GGANAVVVRAFDPSTDRTLPRGKQFWRPKSESIWYTRTTGIWQPVWIESVGPVHVRRL
                     RVTPDVDNSQVGVEAVLSGTAQGLKLRTTVRLANQVQAQSEVAAVTARPLAVHKLNEQ
                     RLWAPWEPTLYDLTVELVGQSGQVLDRVESYFGQRKVSTHDGRVYLNNYPYYLRLVLD
                     QGYWPDSLLTPPSDEAMQFDIKTAKAMGLNGARKHQKVEDPRWLYWADKLGFFVWGEM
                     ANAQDYTDEYVARFTDEWQQIVARDYNHPSIIVWVPLNESWGVLDIFTNRQQQEHAKT
                     MYYLLRSLDPTRLVIDNDGWEHTDATDLFALHDYARTGEELAARYKILETEPAKVPRN
                     GRDALALGYKYNGSPFVLTEFGGIAYRVGGRRAENEWGYSGIEPTKEAMLKRLDGLVK
                     AIVSNKAWAGYCYTQLTDVEQEINGLMTYDRKLKAEPEEFKRIFEQR"
     gene            2183..3346
                     /gene="galK"
                     /locus_tag="VD968_02335"
     CDS             2183..3346
                     /gene="galK"
                     /locus_tag="VD968_02335"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004335 - galactokinase activity [Evidence
                     IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HYE13259.1"
                     /translation="MIEPGKIRRAFAELYGREPRLFRAPGRVNLIGEHTDYNGGFVLP
                     VAIDRETVVAAAPRADRRVRAYSLNMGEAAEFDLGVPGERRRGIWLDYVEGMARALME
                     GGTNLVGADLMILSDVPAGAGLSSSAALEVSAGLALATVAGEEVDRVALALAGQRAEH
                     TYVGTMCGIMDQFIAALASPGHALLIDCRSLEAMQVPLDTGEVTIAVCDSRVKHELSS
                     SEYNARRAECERGVELLRAALPGIRQLRDVSVADFREHESLLPEPVRSRCRHVVTEDE
                     RTLATVEALRRSELGEVGRLMYASHESLRDDYEVSCKELDALVELARGCAGVVGSRMT
                     GGGFGGSTVTLVRRDALEEFTSRVSEGYRARTGLETKIYVSEPAGGAAEVTWH"
     gene            3356..4438
                     /locus_tag="VD968_02340"
     CDS             3356..4438
                     /locus_tag="VD968_02340"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HYE13260.1"
                     /translation="MSSIRDVAREAGVSTATVSHVINNTKYVSEEVRARVLEAIERRG
                     YYPNAHARSLASGRSQILGLIISDISNPFFPELVKSIETAAFERGYDVVLANTNYDPE
                     RTSHYVRRFIERKVAGVALMTSELGTALVGELARREVSVVFLDLGEPGVHMSNLCVDY
                     KQGIAEAIAHLVSLGHREVAFIGGPQQLRSAARRLEAFRASMRKYLPRASPRVYYGDF
                     KLEGGRRAACEILAGEELPTAVVAANDMMALGAVAELRAAGLHIPRDVSVVGFDDIAF
                     TALAEPQLTTVCLPRAELGRRAVEALMTTLEHPDQLGVEINIPTYLVIRGSTAPARVR
                     RPPVAAGARSAGRAAARGVRPGRAKS"
     gene            4472..6082
                     /locus_tag="VD968_02345"
     CDS             4472..6082
                     /locus_tag="VD968_02345"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HYE13261.1"
                     /translation="MKMVLARLLRLTTAWLAVLIAVSSSTTVAQRRAEYWNPVEPGDY
                     PDPSVIRVGNDYWATATSSEWGPEYPLLHSRDLVNWRIVGTIFKEKPAWSVGNYWAPE
                     IAEHRGRFFIYYTARKKGGPLCVAVATAPRPSGPYRDHGPLVCQEVGSIDGFPVTDER
                     GRRYLLWKEDGNSVSKPTPIWAQRLSADGTRLVGERKELIRNDQPWEKHATLPYGDLV
                     EGPALVRRNGYFYMFYSGNFCCARECNYMVGVARARNLLGPWEKNPANPIMAGNDEWK
                     CPGHGTLVTDARGRDWFLYHAMSAKDTVYVGRQAMLDEVRWGRDGWPTINDGRGPSSR
                     AASPHSVRETEAADYRFFDDFTTATLRHGWQWPHVAPPTLKVEPARQGWLAVTPAGAQ
                     SESPVGAVVARTTTVGDYEATTLVETGRLTGGASAGLSAFGDLENALGLSVGGGKLTL
                     WRREKNEHRVVETADAPRGASLHIRMRARGGHRYRFAVSRDGRDWRDVGDEIDGAYLP
                     PWDRGVRVALVAGGSTARFGYLRMEPTK"
     gene            6112..7101
                     /locus_tag="VD968_02350"
     CDS             6112..7101
                     /locus_tag="VD968_02350"
                     /inference="COORDINATES: protein motif:HMM:NF012742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYE13262.1"
                     /translation="MKSFNYGRRAALLLMFALALLGLGLAGCRKEGGGGGGRKEGKLR
                     VGFSQTETDGPWRIAETKSMQDEAAKRGHELIFTNARGDTATQVSNLEDLIAQRVDAI
                     FLAPREAKGFEGPLQAAKEAGIPVILIDREIEGKAGEDYVTFIGSNFVEEGRRAGEWL
                     AKQTNGKAGIVELLGTPGSSVAIDRHNGFAEAIKSHPDMKIIASQDGNFTRAQGQKVM
                     ETLIQAHNKAITAVYAHNDEMALGAIQALKSAGMNPGKDVIVVSVDGQKSALEAIMRG
                     EMNATVECNPRFGPVAFDTLERHLRGEKVEPKITIPDRFFDTTNAAQFVNEAY"
     gene            7107..>7438
                     /locus_tag="VD968_02355"
     CDS             7107..>7438
                     /locus_tag="VD968_02355"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYE13263.1"
                     /translation="MKEEPLLRMEGIRKVFSGVVALDGVDFRLERGEVHALVGENGAG
                     KSTLIKVMTGAYRRDGGRVLLEGREVNFNSPEDAQAEGVVAVYQEVNLLMFRTVAENI
                     FLGREPRR"
BASE COUNT         1305 a         2464 c         2570 g         1099 t
ORIGIN      
        1 tggggccttt cgagacgata gcgcaggaga cgggcgcgaa ggacagcgcg atcgtgcgcc
       61 gcagcgacgt gtggatcgcc cccggccaca actcggtctt caaggacgac gccgggcagg
      121 actggatcgc gtaccacgcc ataaacgtcc ggcgccccta cgtctcggac gcaatcggcg
      181 gcgaccgaag cgtccgccgc gtgatgctga ttgaccggct cgaataccgc gacggctggc
      241 cgcgcgtcga ggcgggctct ccgtcaaaag gcagagtgaa ggggccggcc atgaaccgcc
      301 ccgctggcac acgataaagc tttgatgaaa aacctgagac aaacccttcg gcggctggcg
      361 gcactcgcgg cctgtgccgt gctgctcgcg ggcgccgcga tggcgcaggc cgtcccgcgc
      421 cctgagcacc cgcgccccga cttcgtccgc gcagactggc agaccctaaa cggcacttgg
      481 gagttcgagt tcgacgacgc gaaccgcggc ctcgccgagc gctggttcga gccttcgacg
      541 ggcaagcgtt tctctaagac catcgtcgtc cccttcgcct tccagtcgcg catgagcggc
      601 atcggcgaca cctccttcca cgacgtggtc tggtatcggc gcgcgctcaa cgtccccgag
      661 aacttcctcc gggacggccg gcgcgtcacg ctcaacttcg gcgccgtgga ctacgaggcc
      721 gaggtgtggg tgaacggcct gcacgccggc tcgcaccgcg gcggccacgt cggcttctcc
      781 ttcgacatca cagacctgct caaaggtggc gccaacgccg tcgtcgtgcg cgccttcgac
      841 ccctcgaccg accgcacgct gccgcgcggc aagcagttct ggcggccgaa gtccgagagc
      901 atctggtaca cgcgcacgac cggcatatgg caaccggtct ggatagagtc ggtcggccca
      961 gtccacgtca gacgcctgcg cgtcacaccc gacgttgaca actcgcaggt cggcgtcgag
     1021 gcggtcctga gcggaacggc gcaggggctc aagctccgaa cgactgtgcg gctagccaat
     1081 caggttcaag cgcagtccga ggtggcagcc gtgacggcgc ggccgctcgc cgtccacaag
     1141 ctcaacgagc agaggctgtg ggcgccgtgg gagccgacgc tctacgacct gacggtcgag
     1201 ctggtgggac agtcggggca ggtgctcgac cgcgtcgaga gctacttcgg ccagcggaag
     1261 gtgagcacgc acgacgggcg cgtctatctc aacaactacc cttactacct ccgcctggtc
     1321 ctcgaccagg gctactggcc cgacagcctc ttgacgcccc cctcggacga ggccatgcag
     1381 ttcgacataa agacggcgaa ggcgatgggc ctcaacggcg cgcgcaagca ccagaaggtc
     1441 gaagacccgc gctggctcta ctgggccgac aagctcggct tcttcgtctg gggcgagatg
     1501 gcgaacgctc aggactacac ggacgagtac gtcgcgcgct tcacagacga gtggcagcag
     1561 atcgtggcgc gcgactacaa ccacccctcg ataatcgtct gggtgccgct gaacgagtcg
     1621 tggggcgtgc tcgacatatt cactaaccgg cagcagcagg agcacgccaa gacgatgtac
     1681 tacctgctgc gctccttaga ccccacgcgc ctcgtcatag acaacgacgg ctgggagcac
     1741 accgacgcca cagacctctt cgccctccac gactacgcgc gaacgggcga agagctggcc
     1801 gcgaggtata aaatcctcga gaccgaaccg gccaaagtcc cccgcaacgg ccgcgacgcg
     1861 ctcgccctag gctacaagta taacggctcg ccgttcgtgc tcacggagtt cggcggcatc
     1921 gcctaccgcg tcggcgggcg ccgcgcggag aacgagtggg gctattccgg catcgagccg
     1981 acgaaggagg cgatgctcaa gcgcctcgac gggctcgtca aggcaatagt ctcgaacaaa
     2041 gcctgggccg gctactgcta cacgcagttg acggacgtgg agcaggagat aaacgggctg
     2101 atgacctacg accgcaagct gaaggccgag cccgaggagt tcaagaggat tttcgagcag
     2161 cgctagcgcc gagggccgag gggtgatcga accgggcaaa atcaggcgcg ccttcgcgga
     2221 gctctacggg cgcgagccgc gactgtttcg cgcgcccggc cgcgtgaacc tgataggcga
     2281 gcacacggac tacaacggcg gcttcgtcct gcccgtcgcg attgaccgag agaccgtggt
     2341 cgccgccgcg ccgcgcgcag accgccgcgt gcgcgcctac tctttaaaca tgggggaggc
     2401 ggccgagttc gacctgggcg tgccggggga gaggcgccgc ggcatctggc tcgactacgt
     2461 cgaaggaatg gcgcgggcgc tcatggaggg cgggacgaat ctggtcggcg ccgaccttat
     2521 gattctctcc gacgtgccgg ccggggcggg cctctcgtcg tcggcggcgc tggaggtctc
     2581 cgcggggctc gcgctcgcga cggtcgcggg cgaggaagtt gaccgcgtgg cgctcgccct
     2641 cgcgggccag agggccgagc acacctacgt cgggacgatg tgcggcataa tggatcagtt
     2701 catagccgcg ctcgcgagcc ccggccacgc gctcctgatt gactgccgct cgctcgaagc
     2761 gatgcaggtg ccgctcgaca cgggcgaggt gacaatcgcc gtctgcgact cgcgcgtgaa
     2821 gcacgagctg tcctcgtctg agtacaacgc gcgccgtgcg gagtgcgagc gcggcgtgga
     2881 gctgctccgg gccgcgctgc ccggcatcag gcagctcagg gacgtgagcg tagcggattt
     2941 tagggagcac gagtcgctcc tgcccgagcc ggtgcgcagc cgctgccggc acgtcgtgac
     3001 ggaggacgag cggacgctag cgacggtcga ggcgctgcgc cgctcggagc tgggcgaagt
     3061 ggggcggctc atgtacgctt cgcacgagag cctgcgcgac gactacgagg taagctgcaa
     3121 ggagcttgac gcgctcgtcg agcttgcgcg cggctgcgcg ggggtcgtcg gctcgcgcat
     3181 gacgggcggc ggcttcggcg gctcgaccgt cacgctcgtc cggcgcgacg ctctcgaaga
     3241 attcacctcg cgggtctcgg aaggctaccg cgcgcgcacg gggctcgaga cgaaaatcta
     3301 cgtctccgag ccggcgggcg gcgcggccga agtgacttgg cattaagttg agtctatgag
     3361 cagcatccgc gacgtggcgc gcgaggcggg cgtctcgacg gcgaccgtct cgcacgtcat
     3421 caacaacacg aagtacgtct ccgaggaggt tcgggcgcgc gtgctcgagg cgatagagcg
     3481 gcgcggctac tacccgaacg cgcacgcgcg cagcctcgcc tcgggccgca gccaaatttt
     3541 gggccttatc atctcggaca tctcgaaccc gttcttcccg gagcttgtga agtccattga
     3601 gactgcggcc ttcgagcgag gctacgacgt ggtgctcgcg aacacgaact acgacccgga
     3661 gcgcacctcg cactacgtcc gccgcttcat cgagcgcaag gtggcgggcg tggcgctgat
     3721 gacctcggag ctgggcacgg cgctcgtggg cgagctggcg cggcgcgaag tctctgtagt
     3781 cttcctcgac ctgggcgagc cgggcgtcca catgagcaac ctctgcgtgg attacaagca
     3841 gggtatcgcg gaggcgatag cccacctcgt ctcgctcggc cacagggagg tggcgttcat
     3901 tggcggcccg cagcaactcc gctcggcggc gcggcggctc gaagccttcc gcgcctcgat
     3961 gcgtaagtac ctgccgcgcg cgtcgccgag ggtctattac ggcgacttca agctcgaggg
     4021 cggccgtcgc gcggcctgcg agattctggc gggcgaggag ctgccgacgg cggtcgtggc
     4081 agcgaacgac atgatggcgc tcggggcggt cgccgagctg cgcgcggcgg ggctgcacat
     4141 accgcgcgac gtgtcggtcg tgggcttcga cgacatagcg ttcacggctc tggccgagcc
     4201 gcagctcacg accgtgtgcc tgccgcgcgc ggagctggga cggcgcgcgg tcgaggcgct
     4261 gatgacgacg ctcgagcacc cggatcagct cggcgtggag ataaacatac cgacctacct
     4321 ggtcatacgc ggctcgacgg cgccggcgcg cgtgcgccgg ccgccggtcg cggcgggcgc
     4381 tcgctcggcc ggccgggcgg cggcgagggg cgtgcgcccc ggccgagcga aaagttaaag
     4441 aacgcggggg tgacggatga agaggacgat gatgaaaatg gtgctggccc gattgcttcg
     4501 actgactacg gcctggcttg cggtcttgat agcagtctcg tcgtcaacaa ctgttgcgca
     4561 gcggcgcgcg gagtactgga acccggtcga gccgggcgac tacccagacc cttccgtgat
     4621 tcgcgtgggt aacgactact gggcgacggc gacctcttcg gagtgggggc cggagtaccc
     4681 tctgctgcac tcgcgcgacc tcgtcaactg gcggatagtc ggcacgatct tcaaggagaa
     4741 gcccgcgtgg tcggtcggca actactgggc gccggaaatc gccgagcacc gtggccgctt
     4801 cttcatctac tacacggcgc gaaagaaagg cggcccgctc tgcgtagcag ttgccacggc
     4861 cccgcggccc tccgggcctt accgcgacca cgggccgctc gtctgccagg aggtcggctc
     4921 gattgacggc ttccccgtca cggacgagcg cggccgccga taccttctct ggaaggagga
     4981 cggcaactcc gttagcaagc ctacgcccat ctgggcgcag cgcctttcgg ccgacggcac
     5041 gcgcctcgtc ggcgagcgaa aggaactcat ccgcaacgac cagccgtggg agaagcacgc
     5101 cacgctccca tacggcgacc tcgtggaagg cccggcgctc gtgcgccgca acggctactt
     5161 ctacatgttc tactcgggca acttctgctg cgcgcgcgag tgcaactaca tggtcggcgt
     5221 cgcccgcgcg cgtaacctgc tcgggccgtg ggagaagaac cccgcgaacc ccatcatggc
     5281 cggcaacgac gagtggaaat gccccggcca cggcactctg gtcacggacg cgcgcgggcg
     5341 cgactggttc ctctaccacg cgatgagcgc caaagatacg gtttacgtcg ggcggcaggc
     5401 gatgctcgac gaggttcgct gggggcgcga cggctggccg acgattaacg acgggcgcgg
     5461 cccgagcagc cgcgccgcct ccccgcacag cgtccgcgag acggaggcgg ccgactaccg
     5521 cttcttcgac gacttcacga cagcgacgct ccgccacggc tggcagtggc cgcacgtcgc
     5581 gccgcccacc ctgaaggtcg agcccgcgcg tcagggctgg ctcgccgtca cgcccgcggg
     5641 cgcgcagagc gagagccccg tgggcgccgt tgtcgcgcgc acgacgaccg tgggcgatta
     5701 cgaagcgacg acgttggttg agacgggccg acttacgggc ggcgcgtcgg ccggcctctc
     5761 ggccttcggc gaccttgaga acgctctggg cctgagcgtc ggcggcggca aactcacgct
     5821 ctggcgcagg gagaagaacg agcacagggt cgttgagacg gcggacgcgc cgcgcggcgc
     5881 ctctctgcac atacgcatgc gagcgcgcgg cggccaccga taccgcttcg ccgtcagccg
     5941 agacggccgc gactggcgcg acgtgggcga tgagattgac ggcgcgtacc tgccgccctg
     6001 ggacaggggc gtgcgcgtcg cgctcgtggc cggcggctcg accgcccgct tcgggtacct
     6061 gagaatggaa ccgactaagt gattcctgaa atcaaaaccg gagatgacaa gatgaaatcg
     6121 ttcaactacg ggcgccgcgc cgccctcctg ctcatgttcg cgctggcgct tttggggctc
     6181 gggctcgcgg ggtgccgcaa ggagggcggc gggggcggcg gcaggaagga agggaagctg
     6241 cgcgtcggct tctcgcagac agagacggac ggcccatggc gcatcgccga gacgaagagc
     6301 atgcaggacg aggccgccaa gcgcggccac gagctgatat tcacgaacgc gcgcggcgac
     6361 actgccacgc aggtctcgaa cctcgaagac ctcatagcgc agcgcgttga cgccatcttc
     6421 ctcgcgccgc gcgaggccaa gggcttcgag gggcctttgc aggcggcgaa ggaggccggc
     6481 atacccgtca tactcattga ccgcgagata gagggcaagg ccggcgagga ctacgtcacc
     6541 ttcatcggct cgaacttcgt cgaggagggg cgccgggccg gcgagtggct cgccaagcag
     6601 acgaacggca aggccggcat cgtcgagctt ctggggacgc ccggctcgtc cgttgctatt
     6661 gaccgccaca acggtttcgc tgaggccatc aagtcgcacc ccgacatgaa gatcatcgcc
     6721 tcgcaggacg gcaacttcac ccgcgcccag gggcagaagg tgatggagac gctcatacag
     6781 gctcacaaca aggcgatcac ggccgtctat gcgcacaacg acgagatggc gctcggcgcc
     6841 atacaggccc ttaagtcggc ggggatgaac cccggcaagg acgtgatagt cgtctcggtt
     6901 gacgggcaga agtcggcgct cgaagccatc atgcgcggcg agatgaacgc cacggtcgag
     6961 tgcaacccgc gcttcggccc cgtcgccttc gacacgttag agcgccacct gcgcggcgag
     7021 aaggtcgagc cgaagataac catccccgac cgcttcttcg acacaacgaa cgccgcccag
     7081 ttcgtcaacg aggcgtactg acctctatga aagaagagcc gctcctccgc atggagggaa
     7141 tacgcaaagt cttctcgggc gtcgtggcgc tcgacggcgt tgacttccgc ctcgagcgcg
     7201 gcgaggttca cgcgctcgtg ggcgagaacg gcgcgggcaa gtcaacgctg ataaaggtga
     7261 tgacgggcgc gtaccgccgc gacggcgggc gcgtgctcct cgaaggccgc gaggtcaact
     7321 tcaactcgcc ggaggacgcg caggccgagg gcgtcgtcgc cgtctatcag gaggtcaatc
     7381 tccttatgtt ccgcaccgtg gccgagaaca tcttcctcgg ccgcgagccc cgccgctt
//
LOCUS       DASPKR010000080         4285 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_527538, whole genome shotgun sequence.
ACCESSION   DASPKR010000080 DASPKR010000000
VERSION     DASPKR010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4285)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4285
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527538"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..532
                     /locus_tag="VD968_02360"
     CDS             <1..532
                     /locus_tag="VD968_02360"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF017200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S16 family serine protease"
                     /protein_id="HYE13264.1"
                     /translation="GDVMQESAQAALTCIKARAERLGMNLEFIRKRDLHIHIPEGAIP
                     KDGPSAGVTMATAMASALTRATVRKDVAMTGEITLRGRVLPVGGIKEKLLAAHRFGMS
                     TVIIPKDNEKDLEDVPEEVRADMTVQLVETIDDVLGLALEDACPADAGEAAPASQPPV
                     WTAEQPAAGGSPTMAE"
     gene            780..1214
                     /locus_tag="VD968_02365"
     CDS             780..1214
                     /locus_tag="VD968_02365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13265.1"
                     /translation="MTDKAKSAELIIRLYELRREEVMRKARNWFASFHPETFEELVAT
                     AFGEHSAYYRMVTTYWDMACSFVNHGAIDAEMFNDANGEQVLVFAKIQPFLEQVRAGG
                     NPDYMQHLERAVLAMPEADKRIAYMREMSKKLSERAAEAQKA"
     gene            1278..1898
                     /gene="yihA"
                     /locus_tag="VD968_02370"
     CDS             1278..1898
                     /gene="yihA"
                     /locus_tag="VD968_02370"
                     /inference="COORDINATES: protein motif:HMM:TIGR03598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HYE13266.1"
                     /translation="MKVTSASFVKSAFEESQWPRDRRPEVAFLGRSNVGKSSLINSLL
                     RVKGLARTSSTPGRTQSLNFFLINERFYFVDVPGYGFARAPREVREGWGKLVTDYLAK
                     RDSLVLSIHIVDSRHEPTTLDLQLREWLLSRGRPFLTVATKADKLSQNELHKNLARAR
                     RALGAVGGGTDAGGELVAYSATTGRGRERVWHALEEAVTASPQSPS"
     gene            2245..3672
                     /gene="rho"
                     /locus_tag="VD968_02375"
     CDS             2245..3672
                     /gene="rho"
                     /locus_tag="VD968_02375"
                     /inference="COORDINATES: protein motif:HMM:NF006886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HYE13267.1"
                     /translation="MSRERTTRTRTSRAGANGAADRDALSKAATATAEIPPDVETDGE
                     ADGFDEAAAQRDGVETFNLATLKEMSISKLTQVAKDLDVPGATGMRKQELIFKVLAAQ
                     TEKSGLIFSEGVLETLPDGFGFLRAPEYNYLPGPDDIYVSPSQIRKFDLRTGDTVSGQ
                     IRPPKEGERYFALIKVEAINFEAPGESRDKVFFDNLTPLYPDEQLRMETNTDHIVGRV
                     IDLVTPLGKGQRALIVAPPRTGKTMMLQAIANSISNNHPEVSLIVLLIDERPEEVTDM
                     QRSVQGEVISSTFDEPPTRHVQVADMVIEKAKRLVEHKRDVVILLDSLTRLARAHNAV
                     VPPSGKILSGGIDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDDVIFEEF
                     KGTGNSEIHLDRRLSDKRLFPAIDLQRSGTRKEELLISKEDLNRIWVMRRVLNPLSPV
                     EQMEVVLERLGKTKNNAEFLASMQS"
     gene            3831..>4285
                     /locus_tag="VD968_02380"
     CDS             3831..>4285
                     /locus_tag="VD968_02380"
                     /inference="COORDINATES: protein motif:HMM:NF019924.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch synthase"
                     /protein_id="HYE13268.1"
                     /translation="MRVAFLSSEAVPFAKTGGLGDVAGALPKALEGAGVDVALVHPLY
                     DTTERRHLEEKVFDNLEVEWLGQRRRVGVWFSESAGAPAFLIESPEYFARGRVYGFPN
                     DHYRFAFFSRAALALMGRLGLGAPDIIHGNDWPCGFALVWLLAGRPWGG"
BASE COUNT          813 a         1435 c         1389 g          648 t
ORIGIN      
        1 cggcgacgtg atgcaggagt ccgctcaggc cgcgctcacc tgcatcaagg cccgcgccga
       61 gcgcctaggg atgaacctcg agttcatacg aaagcgcgac ctgcacatac atatacccga
      121 gggcgctata ccgaaggacg gcccttcggc cggcgtgacg atggcgacgg ccatggcctc
      181 ggcgctcacg cgcgccaccg tgcgcaagga cgtggcgatg acgggcgaga taaccctgcg
      241 cggaagggtt ctgccggtcg gcggcataaa ggagaagctg ctggcggctc accgcttcgg
      301 catgagcact gtcatcatcc cgaaggacaa cgagaaggac ttggaggacg tgcccgagga
      361 ggtgcgcgcc gacatgacag tccagctcgt cgagacgatt gacgatgtgc tcgggctggc
      421 gctcgaagac gcctgcccgg ccgacgctgg cgaggcggcc ccggcctccc agccgcccgt
      481 ctggactgcg gagcagcccg cggccggcgg ctcgcccacg atggccgagt gagtgaagac
      541 gcgggcggcg gggccgactg ctaacagagt cggccccgcc gcccgcgctc tatcttcagc
      601 ccggcggttg acagttcgcc gccccgcctg taaagttcgc acttcccggc gtcacaatcc
      661 agcaggcagc catagataat cagggaaagc ccgctgcgcc tcgcttttcg cccgtccgcc
      721 cgccgaagcg ggaatcaccg gctgacaaaa tccgaccaaa actttatgga gaagcaatca
      781 tgaccgacaa ggccaagagc gccgaactga tcataaggct ctacgagctt cgccgcgagg
      841 aggtcatgcg caaggcacgc aactggttcg cgtcgttcca ccccgagact ttcgaggagc
      901 tggtggcgac cgccttcggc gagcacagcg cctactaccg gatggtgacg acctactggg
      961 acatggcctg ctccttcgtc aaccacggcg caattgacgc agagatgttc aacgacgcca
     1021 acggcgagca ggtgctcgtc ttcgccaaaa tccagccctt ccttgagcag gtgcgcgcgg
     1081 gcgggaaccc cgactacatg cagcacctcg agcgcgccgt gctcgccatg ccggaggccg
     1141 acaagcgcat cgcctacatg cgcgagatgt cgaagaagct ctccgagcgc gctgccgagg
     1201 cgcagaaggc gtaggggcat agacgggcgg cgggttgcga gtcggagtta aaactcgcag
     1261 cccgccgccg ctcgagcatg aaggtaacga gcgcaagttt cgtcaagagc gctttcgagg
     1321 agtcgcagtg gccgcgcgac cgaaggcccg aggtggcctt cctcggccgc tccaacgtcg
     1381 ggaagtcgag cctgataaat tcgctgctgc gcgtcaaggg gctggcgcgc acgtcctcga
     1441 cgccgggcag gactcagtcg ctgaacttct tcctgattaa cgagcgcttc tacttcgttg
     1501 acgtgcctgg gtacggtttc gcgcgcgcgc cccgcgaggt gcgcgagggc tgggggaagt
     1561 tggtcaccga ttaccttgca aagcgcgact cgcttgtgct atcaattcac atcgtagatt
     1621 cgcgccacga acccacgaca cttgatttgc agctcaggga atggctcctc tcaaggggga
     1681 ggcccttcct gacggtcgcc acaaaggcgg acaagctctc gcagaacgag ctgcacaaga
     1741 acctcgcgcg cgcccgaagg gctctgggcg ccgtgggcgg tggcacggac gcgggcggcg
     1801 agttggtcgc gtactccgcg acgacgggcc gcggtcgcga gcgcgtctgg cacgctctcg
     1861 aagaggcagt taccgcctca ccacaatccc cctcttgaga ttcgggctgc cgtggcctct
     1921 ctcgcaaccg cgcggggcgg gccggcatct aaacggcgca cgggtaacct aagcgcgcga
     1981 atttaagtcg gggccggagg gccgggcgtg cctaagctca cgcacgcgcc gcgcccggcc
     2041 gaacgccgcg cgacccggcg accttgtcag acgcgccctc cgcggagggc gtgccaacaa
     2101 taggaaccat tcccgacata gtatcggcaa taatttcact aaccattgaa aggaaccgag
     2161 gcgcggccgc gcgagcacag ccggcacgcc gcagaggtca gttgcacgag caccccggcg
     2221 ggtgcgactg agagaagaac tgaaatgtca cgagaacgca caacacgcac acgcacgagc
     2281 cgcgcgggcg caaacggcgc ggccgacagg gacgcgctca gcaaggccgc cacggccacg
     2341 gccgagatac cgcccgacgt cgagacggac ggcgaggcgg acggattcga cgaggccgcc
     2401 gcccagcgcg acggcgtaga gactttcaac ctggcgacgc tcaaggagat gtccatctcg
     2461 aagctgacgc aggtggcgaa ggacttggac gtgccgggcg cgaccgggat gcgcaagcag
     2521 gagctgatat tcaaggtgct cgcggcgcag accgagaaga gcggcctcat attctccgag
     2581 ggcgttttgg agacgctgcc cgacgggttc ggattcctgc gcgcgcccga gtacaactac
     2641 ctgcccggcc ccgacgacat ctacgtctcg ccctcgcaga tacgcaagtt cgacctgcgc
     2701 accggcgaca ccgtctccgg ccagatacgc ccgcccaaag agggcgagcg ctacttcgcg
     2761 ctcatcaagg tcgaggccat caacttcgag gcgccgggcg agtcgcgcga caaggtcttc
     2821 ttcgacaacc tgacgccgct ctaccccgac gagcagctcc gcatggagac caacaccgac
     2881 cacatcgtcg gccgcgtcat agacctcgtc acgccgctcg gcaagggcca gcgcgccctc
     2941 atcgtcgcgc ctccccgcac cggcaagacg atgatgctcc aggccatcgc caactcgata
     3001 tctaacaacc accccgaggt ctcgctcatc gtgctgctca tagacgagcg ccccgaggag
     3061 gtcacggaca tgcagcgctc ggtgcagggc gaggtcatct cctcgacctt cgacgagccg
     3121 cccacgcgcc acgtgcaggt cgccgacatg gtgatagaga aggcgaagcg gctggtggag
     3181 cacaagcgcg acgtggtcat cctgctcgac agcctgacgc gcctcgcgcg cgcgcacaac
     3241 gcggtcgtcc cgccctcggg caaaatcctc tctggcggca ttgacgccaa cgccctgcag
     3301 cgcccgaagc gcttcttcgg cgcggcgcgc aacatagaag agggcggaag cctgaccatc
     3361 atcgcaacgg ccttgattga cactggctcg cgcatggacg acgtcatctt cgaggagttc
     3421 aagggcacgg gcaacagcga gattcacctc gaccgccgcc tctccgacaa gcggctgttc
     3481 cctgccatag acctccagcg gtcgggcacg cgtaaagaag agctgctcat ctcgaaggaa
     3541 gacctcaacc gcatctgggt catgcgccga gtgctcaacc cgctctcgcc cgtcgagcag
     3601 atggaagtgg ttctggagcg cctcggcaag accaagaaca acgccgagtt cctcgcctcg
     3661 atgcagagct agcgaatggg cggcgggggc cgttgacggg agggccgctg tcggcacccg
     3721 tcacttgtca cccgccgctc ctttcgcata ctattccccc aggctctagc agttaaatcc
     3781 ccactccaaa gccgtctcct ctaagggagc ggtgtgagca gaaggggccg gtgcgcgtcg
     3841 catttctctc ttccgaggct gttcctttcg ccaagacggg cggtctgggg gatgtcgcgg
     3901 gcgcgctgcc gaaggcgctg gagggggcgg gggttgacgt ggcgctcgtc cacccgctct
     3961 acgacacgac ggagaggcgc cacctcgaag agaaggtctt tgacaacctc gaggtcgagt
     4021 ggctggggca gcgccgccgc gtcggcgtct ggttcagcga gtcggccggc gcgcccgcct
     4081 tcctgataga gtcgcccgaa tacttcgcgc gcggccgcgt ttacggcttc ccgaacgacc
     4141 actaccgctt cgccttcttc agccgggcgg cgctggcgct catgggcagg ctcggcctgg
     4201 gcgcgcccga catcatccac ggcaacgact ggccgtgcgg cttcgctctc gtgtggctgc
     4261 tggcggggcg gccgtggggc gggtt
//
LOCUS       DASPKR010000081        12536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1044481, whole genome shotgun sequence.
ACCESSION   DASPKR010000081 DASPKR010000000
VERSION     DASPKR010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12536)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12536
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1044481"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1393)
                     /locus_tag="VD968_02385"
     CDS             complement(<1..1393)
                     /locus_tag="VD968_02385"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13269.1"
                     /translation="MHSFKLARVRSLACLLAALCCLTLTARAQTPESTDDAATEIKSF
                     ERLEWRQIGPANMGGRTADVEGVPGRPEVVYVATASGGLWKTTNGGVRWSPVFDRQGT
                     ISIGDIALEPGNPDVVWVGTGEANPRNSVSFGDGVYKSTDGGKTWQHVGLRDSERISR
                     ILINPRDPNVVYVGALGHAFGINEERGVFMTTDGGKTWSKTLYVDAEHGIADMDIDPS
                     NPNVLYAAVWKFKRTPWTHTSGSEKGGVFRSTDGGRTWKRLEGGLPKLVGRIGVKVAP
                     SNPSVVYAITEAKDGTLWRSDDRGETWRNVSKETRIVSRGFYYTDLRVDPQNENRVYA
                     IASTLFVSIDGGRTFRSITGRTHIDYHALWIDPTNPKRMWQGQDGGVAVSYDAGESWE
                     YVNNMPLGQFYQIHADNRQPFYHLVGGLQDNGTWTGPSRTREPSGILNDDWRMVSFGD
                     GFFALNHADDPDLY"
     gene            1578..3794
                     /locus_tag="VD968_02390"
     CDS             1578..3794
                     /locus_tag="VD968_02390"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13270.1"
                     /translation="MRTTPGLRRQQLLKFNTRTLVKLLLLAAAGLSPSCALTEEKPRP
                     TEAGWAAFVETIAGDGTPGFADAPAGAQARFREPFGVAVGADGSVFVSDAGKTNAIRK
                     LSPRGEVSTLAGGREGFADGAGAAASFDTPSGLAVDADGNLYVADTGNNRVRKVTPEG
                     TVSTLAGDGTRGSRDGPAAQAQFDAPLGVAVDNDGNVYVADTYNDRVRLITKSGEVKT
                     IAGAAGGPSYSDGDALGAALFDTPCAVAVAPGGELFIADTGNNRVRRLTKEGEVITVP
                     FVFEGAAAEGDGAPAPGFVSKPVGLAVTHDGFLYVTEMDRGRVVQVSPDGRARRVAGL
                     GPGFSDGDAQAARFNQPSGLALDATGSLVVADAANCLVRRVRAAAQGDAGRVDEKQAV
                     APPALPAPAGPLPRLGGEAFGEGPFPWPLDPQDRPHEVSATMGEVRGSYDTDDSRHHL
                     HSGLDVFGTHGQVVRAVFEEKVSSPLPNWGFGGLNEGLRVGLFSYIHIRVGRDERDEM
                     LDGTPFVAVAGADGKTSRVRVRRGTRVRVGDALGTINRMYHVHMNLGPPGAEINPLML
                     APAGFRDRIAPTIEAVKLFDESGAELKGRRAGRLLLRGRVRVVVDAFDRNDSNGERRR
                     LGLYKLGYQLLLPDGSPAPGFESPRVTIEFDRLPPDPEATKIAYADESGITVYGSART
                     RFLYELTNTVRDGLASHGLWDTSRLPPGDYTLRILASDFNGNEAEAGRDLPVTIEP"
     gene            complement(3881..6016)
                     /locus_tag="VD968_02395"
     CDS             complement(3881..6016)
                     /locus_tag="VD968_02395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13271.1"
                     /translation="MLSKARLILAAALVMCACAAASAQNDLPKALLSVNPDDAAPAAR
                     KYYVDVTMDVPLGDAMHEQLGGASPPVIGVLAAKGKPVPDQGAFKNMFLIAPLDELEP
                     ADRAPLFKALFRMYVPEKIYLDPAHPEKLLDPFADFNALKLSVIITNYIGEDGGSVVR
                     SVPVAKAVERELTTEFPTCRPGEVALTFPYDPQDPFSLKRAVKLHDYLNRRLRPRLGE
                     VKIEVEPLTRDKVTTIGVKEMRLTPEATREVEARTLTINQTVAACFIPDRGLPTEKFD
                     ARLTLPSDAPADLLHPRVTAGLAGRSAEASPKVFVDKEKAVGVRPIEKDLNIGVSLIS
                     SVADEEQEDGPAIRRRNTIGTLDLRLGFFRDVERLTVKGVSEGEIRPMKVCGEVVEHK
                     PATGADPESITIVGETFTLAPGLRLTGVRPGTQQCLHFKYVDAGGRLTETNTNPLPAG
                     VPPDPPFAPRISGLEDPDVTAGTYSIFTPFYVDAKVSTGKIVKDTLSLNRVVLGTQEE
                     LRYYANNFRFPTYYRFIFQGNHASDRDFKQGEFKGTFMFRPVFGPLNHPFDPSNTRSV
                     GRELCPRCKPPFKLIPIRYGFEFVPLVGAEFGRTYFRRRPAEAVTPSDTVKRVFFGFD
                     STVNPTPRLSLTAQEIFYVRGESKEDRYRNYFLGEAAYRLTDLFDSRAAHSIFFSWER
                     GGQPPFDEADVNVLKFGYRLTATTIFSRF"
     gene            complement(6082..6390)
                     /locus_tag="VD968_02400"
     CDS             complement(6082..6390)
                     /locus_tag="VD968_02400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13272.1"
                     /translation="MATEAQVTPFFYAQLNNDARDETVAAGANWRSHPLSFFYSSEVS
                     VDIAVKRVMLQMLALEHATLPDFLWVNLRNMVNRATSAGDAVTIIAQVSSGAVHEPIG
                     "
     gene            6656..7471
                     /locus_tag="VD968_02405"
     CDS             6656..7471
                     /locus_tag="VD968_02405"
                     /inference="COORDINATES: protein motif:HMM:NF015402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BtpA/SgcQ family protein"
                     /protein_id="HYE13273.1"
                     /translation="MFTSLFPESKPVVGVIHVGALPGTPASEAGVDEIAASAVREAAL
                     YRDAGVDAVAVENMHDVPYLRGSVGPEIVAAMAVIGLEVKRGARFPTGVQILAGANTE
                     AVAAAHAAGLDFVRAEGFAFAHVADEGWIESSAAELLRYRRKIGAGRVQVWADVKKKH
                     SSHAVTSDVSLGATAEAAEFMRADAVIVTGSVTGAPPRVEDVREAKAHCRVPVLLGSG
                     IAPENVSEFYDEADGFIVGSYFKEGGHWANAVDARRVERLTGAVRRLRDGARG"
     gene            complement(7482..8867)
                     /locus_tag="VD968_02410"
     CDS             complement(7482..8867)
                     /locus_tag="VD968_02410"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HYE13274.1"
                     /translation="MIKSCGALAGSAALAAGLERFGLVGALARASDASDYKALVCVFL
                     EGGNDGNNTVVPLDEYDAPGGYAAVRASSGLAVPRASLLPVSPPSQQGLAYGFHPSLV
                     ELQALFKQGRLAVLCNAGTLVRPLTRTLYRSGVGHPYQLFSHPDQLGQQQACVSAAQT
                     GWGGRVADLMAGLNGSAPLLPMNVSVAGASLFTTGELTRQLVINPGLPLHDAFSIDYG
                     SYVFPSSREAAIAAFNNIRKGATGGLLGAAAEPVEQAARARQAIPTDPVLPPLEAGQT
                     DFPPTPIGFQLRQVAKLISLRAQLGVRRQIFFCLIPGFDHHSNQHSALNGHGVLLLQL
                     SKAMKAFHDATVRLGVADSVTTFTLSDFGRTLDPSGSGAAVGSDHAWGSHHLIMGGAV
                     RGGDFYGTFPVLALGGPDDADDRGRWIPTTSTEQYAATLALWFGLPEADLPAVFPLVG
                     RFETPNLGFMS"
     gene            complement(8901..11054)
                     /locus_tag="VD968_02415"
     CDS             complement(8901..11054)
                     /locus_tag="VD968_02415"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 family protein"
                     /protein_id="HYE13275.1"
                     /translation="MRTRTQLTRLARALGLCLALPLCAAAQTEGAAPVLVTEPDSTRA
                     VALDPVRMTPGPFTAVAPVPFGADAATRVVVFATNVRLYVGETAGAFGAEAEDGRGRT
                     YRLKVEHAGPVPGFAGLTQFTVRLDPSMADAGDVLLRVTLRGMTSNRVRLAVGREGGG
                     PPDDVGSVPTPAPAVPPAPLPAATPDPYTGPATSADAVRFLEQSSFGPTPAEVERAKA
                     MGLRAYLEEQFAAAPSGYPTLPLVPIDSRLYCGSDYPCLRDNYTMHPLQTRFFRNAFY
                     GRDQLRQRVAFALHQVFVVSAKDLNQASWYAPYLQALDRNAFGSFRALMHDVTLNAAM
                     GEFLDSEGNTKEKPNENFAREILQLFTIGPDLLNADGTPRLDEQGNRTPAYTQATVND
                     FARVFTGWVYANPPAGSQGLINFLDPMQPVERFHDAGAKTLLGGAHLPAGQTAAQDLS
                     AALDNIFNHPNVGPFVSQRLIRHLVTSNPSPAYVGRVSAVFDDNCAGFYPDAGCTRER
                     GDLKSVVRAILLDPEARGDVKTDPAYGRLREPALYAAGLCRAFGVRGLGPGINNIVES
                     DGYLTPWVAGMGQDIWKPPTVFGYYPDDYTVPGTTLRGPEFGAHTSTTVLGRVWFASQ
                     MVFRGGIGARATPENTTGTFINTTPFHPLAAEPAKLVAALDALLLHGTMTPAMRSEII
                     RVVETYPATYPNYLRDRTWVAVFLIVSSPQYHLQK"
     gene            11249..12499
                     /locus_tag="VD968_02420"
     CDS             11249..12499
                     /locus_tag="VD968_02420"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE13276.1"
                     /translation="MKEMRGLLSVVASGLMAAALCSVASARQASGGAEWPQWRGPNRD
                     GVSKETGLLKQWPEGGPPLVWKAQGAGIGYSSLAVANGRVYTMGLRGEREYVIAFDAA
                     TGKELWATPNGSAYRDSRGDGPRGTPTVDGERLYALGGNGDLSTLDAKTGKVVWAMNV
                     LEKFGASNIGWGISESPLVLGEKLLINPGGRGASLVALDKRDGRVLWKSASDKAGYSS
                     AIPVQAGGKTQVVFFTQERAVGVDPADGKILWEYAKPSNDTANVATPVARGNRVFISS
                     DYGTGGGVVEIKPDGAGAREVYFTREMRYHHSTSILVGEHLYGFSGAVLTAMRFDTGE
                     IAWKDRSVGKGSLAYADGMLYALSENGVVGLIEATPAGYRERGRFQIPQGSRNTWAHP
                     VVAGGRLYLRDQDTIYAFDVRQKK"
BASE COUNT         1946 a         4075 c         4520 g         1995 t
ORIGIN      
        1 ggtacaggtc tgggtcgtcg gcgtggttta aggcgaagaa gccgtcgccg aacgagacca
       61 tgcgccagtc gtcattcaag atgcccgagg gctcgcgcgt gcggctgggg ccagtccaag
      121 tgccgttgtc ctgaaggccg ccgaccaggt ggtagaaggg ctgacggttg tctgcatgaa
      181 tctgatagaa ctgccctagt ggcatgttgt tgacgtactc ccaactttcg cccgcgtcgt
      241 aggagacggc gacgcctccg tcctgcccct gccacatgcg cttagggttc gtcgggtcta
      301 tccagagcgc gtggtagtca atgtgagtgc ggcccgttat ggagcggaac gtccggccgc
      361 cgtcaatcga gacgaagagc gtggaggcga tggcatagac ccggttctcg ttctgcgggt
      421 caacgcggag gtctgtgtag tagaagccgc gcgagactat gcgcgtctcc ttcgagacgt
      481 tgcgccacgt ctctccgcgg tcgtccgagc gccacagcgt cccgtccttc gcctccgtga
      541 ttgcatagac gaccgagggg ttcgacggcg cgaccttgac gcctatgcgc cccaccagtt
      601 tcggcaggcc cccttcgagc ctcttccacg tgcgcccgcc gtcggtcgag cggaacacgc
      661 cgcccttctc gctcccggag gtgtgcgtcc acggcgtgcg cttgaacttc cacaccgccg
      721 cgtagagcac gttcgggtta gacgggtcta tgtccatgtc ggcgatgccg tgctcggcgt
      781 caacgtagag cgtcttggac caggtcttcc cgccgtcggt cgtcataaac acgccgcgct
      841 cctcgtttat gccgaaggcg tggccgagcg cgcccacgta aaccacgttc gggtcgcgcg
      901 ggtttatgag tatgcgcgag attcgctcgg agtccctgag ccccacgtgc tgccaggtct
      961 tgccgccgtc ggttgactta tagacgccgt cgccgaagga gacggagttt cgcgggttcg
     1021 cctcgcccgt gccgacccag acaacatcgg ggttgccggg ctcgagcgcg atgtcgccga
     1081 tggagatggt gccttgcctg tcgaagacgg gcgaccagcg cacgccgccg ttcgtcgtct
     1141 tccacaggcc gcccgaggcg gtcgcgacat agacgacttc ggggcggccg gggactccct
     1201 ccacgtcggc cgtgcgcccg cccatgttgg ccgggcctat ctgcctccat tcgaggcgct
     1261 cgaaggactt tatctcggtg gccgcgtcgt ccgtgctctc gggcgtctgc gcgcgcgcgg
     1321 tcagtgtcag gcagcagagc gcggccagaa ggcatgcgag cgagcgcacg cgggcgagct
     1381 tgaagctgtg catctattca ggctcctcgg gcggttggat agagagtggc gcgcgtcagg
     1441 ataaaccaga cgcgggcgcg aacggaagag gcgcggcgaa aaagcgccga aggcgcggag
     1501 gcagggggcc ggttagcctt ttgcgctccc gccttttatc atcactgccg agccttcaga
     1561 cggaagaacg aaccgacttg cgaacaacac ccggcctccg ccgccagcaa ctactgaagt
     1621 tcaacacgcg cacactcgtc aagctcctgc tgctcgcagc cgcggggctc tcgccttcgt
     1681 gcgcgctgac cgaggagaag ccgcgcccga ccgaggcggg ctgggccgcc tttgtcgaga
     1741 cgattgctgg cgacggcacg cctggcttcg ccgacgcgcc cgcaggcgcg caggcacgct
     1801 tccgcgagcc cttcggcgtg gccgtcgggg cggacggcag cgtcttcgtc tcggacgcgg
     1861 gcaagaccaa cgcaataagg aagctttcgc cgcgcggcga ggtctcgacg ctcgcagggg
     1921 ggcgcgaagg cttcgccgac ggcgcgggcg cggcggcctc attcgacacg ccctcggggc
     1981 tcgccgttga cgcggacggg aatctctacg tcgccgacac gggcaataac cgcgtgcgga
     2041 aggtcacgcc cgaaggcaca gtctcgacgc tcgcgggcga cggcacgcgc ggctcgcgcg
     2101 acgggccggc cgcgcaggcg cagttcgacg cgcccctggg cgtcgctgtt gacaacgacg
     2161 ggaacgttta tgtcgctgac acctacaacg accgcgtgcg gctcataacg aagtcgggcg
     2221 aagtgaagac tatcgcgggc gcggctggcg gccccagcta ctcggacggc gacgcactcg
     2281 gggccgcgct cttcgacacg ccctgcgccg tcgccgtcgc ccccggaggc gagcttttca
     2341 tagccgacac cggcaacaac cgcgtgcgcc gcctcacgaa ggagggagag gtaatcaccg
     2401 tccccttcgt cttcgagggc gcggccgcgg aaggggacgg cgcccccgcg cccggcttcg
     2461 tctcgaagcc cgtggggctc gccgtcacgc acgacggctt cctgtacgtg accgagatgg
     2521 atcgcggccg cgtcgtgcag gtctcccccg acggccgcgc acgccgcgtc gccggcctcg
     2581 gccccggctt ctctgacggc gacgcgcagg cggcgcgctt caaccagccg tcggggctcg
     2641 cgctcgacgc aactggctcc ctcgtcgtcg cagacgccgc gaactgcctc gtacgaagag
     2701 ttcgagcggc cgcgcaaggc gacgccgggc gcgttgacga gaagcaggcc gtcgcgcctc
     2761 ccgccctgcc ggcgccagcc gggccgctcc cgcgcctggg cggcgaggcg ttcggcgaag
     2821 gccccttccc ctggccgctc gacccgcagg acaggccgca cgaggtctcg gcgacgatgg
     2881 gcgaggtgcg cgggagctac gacaccgatg acagccgcca ccacctgcac agcggtctcg
     2941 acgtgttcgg cacgcacggc caggtcgtgc gcgccgtctt cgaagagaag gtctcaagcc
     3001 ccctgccaaa ctggggcttc ggcggcctga acgaggggtt aagagtcggc ctcttctcct
     3061 acatacacat ccgcgtcggg cgcgacgagc gcgacgagat gctcgacggc acgcccttcg
     3121 tcgccgtcgc gggcgccgac ggcaagacct cgcgcgtgcg agtgcggcgc gggacgcgcg
     3181 ttcgcgtggg cgacgcgctc ggcaccatca accgcatgta ccacgtccac atgaatctcg
     3241 gcccgcccgg cgccgaaatc aacccgctca tgctcgcgcc cgcgggcttc cgcgaccgta
     3301 tcgcaccgac gattgaggcg gtcaagcttt tcgacgagtc gggcgcggag ctgaaggggc
     3361 ggagggcggg gcgcctcctc ctgcgcggcc gagtgcgcgt ggtcgttgac gccttcgacc
     3421 gcaacgactc gaacggcgag cgacgccgcc tcggcctcta caagctcggc taccaactgc
     3481 ttttgcccga cgggagcccc gcgcccggct tcgagagccc gcgcgtcaca atcgagttcg
     3541 accgcctgcc gcccgatccc gaagctacca agatcgccta cgccgacgag agcggcataa
     3601 ccgtttacgg cagcgcgcgg acgcgcttcc tctacgagct gacgaacaca gtccgcgacg
     3661 gcctcgcctc gcacggcctc tgggacacct cccggctccc gcccggcgac tacacgctcc
     3721 gcatcctcgc ctccgacttc aacggcaatg aggccgaggc ggggcgcgac ctgcccgtca
     3781 caatcgagcc ttagagcgcc cgacgaaagc gaggaggggc gcgggggcga agcggttcgc
     3841 ccccgcgccc ctcctccggc ggcctcccgg cccgagtctg tcagaagcgg ctgaagatag
     3901 tcgtggccgt cagcctgtag ccgaacttga gcacgttcac gtcggcctcg tcgaaggggg
     3961 gctgcccgcc gcgctcccag gagaagaaga tgctgtgcgc ggcccgcgag tcgaagaggt
     4021 cggtcaggcg gtaggcggcc tcgccgagga agtagttgcg gtagcggtct tccttcgact
     4081 cgccgcggac gtagaagatt tcctgtgccg tgagcgagag cctcggcgtc gggttcacgg
     4141 tcgagtcgaa gccgaagaag acgcgcttga cagtgtccga gggcgtgacg gcctcggccg
     4201 gccggcggcg gaagtacgtt cggccgaact ccgccccgac gagcgggacg aactcgaagc
     4261 cgtagcggat ggggatgagc ttgaagggcg gcttgcacct ggggcatagc tccctcccga
     4321 cagagcgcgt gttcgacggg tcgaacgggt ggttgagcgg gccgaagacg gggcggaaca
     4381 tgaacgtccc cttgaactcg ccctgcttga agtccctgtc ggaggcgtgg ttgccctgga
     4441 agatgaagcg gtagtaggtc gggaagcgga agttgttcgc gtagtagcgc aactcctcct
     4501 gcgtgccgag caccacgcgg ttgagcgaga gcgtgtcctt gacgatcttg cccgtagaga
     4561 ctttggcgtc cacgtagaag ggcgtgaaga tgctgtaggt gcccgcggtc acgtccgggt
     4621 cttcgagccc gctgatgcgg ggcgcgaagg gcgggtcggg cggcacgccg gcgggcagcg
     4681 gattggtgtt cgtctcggtg agccgcccgc ccgcgtccac gtatttgaag tgaaggcact
     4741 gctgcgtgcc cggcctgacg cccgtcaggc gcagccccgg cgcgagggtg aaagtctcgc
     4801 cgacgatggt gatggactcg gggtcggcgc cggtcgccgg cttgtgctct acgacctcgc
     4861 cgcacacctt catcggcctg atctcgccct ccgacacccc tttgactgtg agccgctcca
     4921 cgtcgcggaa gaacccgagc cgcaggtcga gcgtcccgat ggtgttccgg cggcggatgg
     4981 cgggcccgtc ctcctgctcc tcgtcggcga cagagctgat gagcgagacg cctatgttca
     5041 agtccttctc gatggggcgc acgcccacag ccttttcttt gtccacgaag accttcggcg
     5101 acgcctcggc cgacctgccg gcgagccccg ccgtcacgcg cgggtgtagg aggtctgcgg
     5161 gcgcgtcgga gggcagcgtc agccgcgcgt cgaacttctc ggtcggcagc cccctgtccg
     5221 ggatgaagca ggccgcgacg gtctggttta tcgtgagcgt cctggcctct acctccctag
     5281 tggcctcggg cgtcagcctc atctctttca cgccgatggt cgtgaccttg tctctagtga
     5341 gcggctcgac ctctatcttc acctcgccga gcctcggcct cagcctcctg ttcaggtaat
     5401 cgtggagctt gacggccctc ttcaatgaaa aggggtcttg ggggtcgtag gggaaggtca
     5461 gggcgacctc gcctggccgg cacgtgggga actcggtcgt cagctcgcgc tcgacggctt
     5521 tcgccaccgg cacggagcga acaaccgagc caccgtcctc gcctatgtag ttggtgatga
     5581 tgaccgagag cttcagcgcg ttgaagtcag cgaaggggtc gagcagtttt tccgggtggg
     5641 ccgggtcgag gtagattttt tcggggacgt acatcctgaa caacgctttg aacagcggag
     5701 ccctgtccgc cggctccaac tcgtcgagcg gcgcgatgag gaacatgttt ttgaacgcgc
     5761 cctgatcggg gacgggcttc cccttcgcgg cgaggacgcc gatgacgggt gggctggcgc
     5821 ccccgagctg ctcgtgcatc gcgtcaccga gcggcacgtc catagtcacg tccacgtaat
     5881 acttccgggc ggccggggct gcgtcgtcag ggttgacgct cagcagcgcc ttcggcaagt
     5941 cgttctgcgc cgacgcggcc gcgcacgcgc acatgacgag cgcggcggcc agaatcaacc
     6001 tggctttcga gagcatagtc ttctccccga gtttatgtgg ttgacggctg tggttgatgt
     6061 tcccccgcgg gaggggccgc ctcaaccgat gggctcgtgg acggcgcccg acgatacctg
     6121 cgcgatgatg gtgacggcgt cgcccgcgga cgtggccctg ttcaccatgt tcctgaggtt
     6181 cacccagagg aagtcgggca gggttgcgtg ctcgagcgcg agcatttgca gcatcaccct
     6241 cttgacggcg atgtccacgg agacctcgct gctgtagaag aaggacagcg ggtgtgaccg
     6301 ccagttggcg ccggccgcga cggtctcgtc gcgcgcgtcg ttgttgagtt gtgcgtagaa
     6361 gaaaggcgtg acctgggcct ctgttgccat cattgactcc tttcctgaaa ggcggggcgg
     6421 gttcgcccgg cggtgcgcgc agttcaagcc aggtttgtga aggcttcgga tgaaacgtgg
     6481 aagccgggcc gccgcggaag aggcgcggcc cgcgtgacgg cgcgcgcgcg catcatactc
     6541 gccccgcccg caaagtcaac agttatcact gtcgctaaca tatgccggcc ccggcgcaaa
     6601 catttcagcc gcgcgccgtt gacacgcgcg ctcggcccgc gctaaaccgg gtgccatgtt
     6661 cacctctctt ttccctgagt cgaagccggt cgtcggcgta attcatgtgg gggcgctgcc
     6721 ggggacgccg gcctcggagg cgggcgttga cgagatagcg gcgtcggccg tgcgcgaggc
     6781 cgcgctgtac cgcgacgcgg gcgttgacgc cgtggccgtc gagaacatgc acgacgtgcc
     6841 gtacctgcga ggctcggtcg ggccggagat agtcgcggcg atggccgtca tagggctcga
     6901 agtgaagcgc ggggcgcggt tccccacggg cgtacagatt ctggcgggcg ccaacactga
     6961 ggccgtcgcc gcggcgcacg ccgccgggct cgacttcgtg agggccgagg gcttcgcatt
     7021 cgcgcacgtg gccgacgagg gctggattga gtcttcggcc gccgagcttt tgcgctacag
     7081 gcggaagata ggcgcgggcc gcgtgcaggt ctgggccgac gtgaagaaga agcactcctc
     7141 gcacgccgtc acctcggacg tgagcctcgg cgcgacggcc gaggccgcgg agttcatgcg
     7201 cgctgacgcc gtcatcgtca cgggctccgt gacgggcgcg ccgccgcgcg tcgaggacgt
     7261 gcgggaggcg aaggcgcact gccgcgtacc cgtcctgctc ggctcgggca tcgccccgga
     7321 aaacgtctcg gagttctacg acgaagccga cggcttcatc gtcggctcgt atttcaagga
     7381 gggcggccac tgggcgaacg ccgtggacgc gcgccgcgtc gagcgcctga cgggcgccgt
     7441 gcggcggctg cgggacgggg cgcgcggatg aaaggcgcgc ttcaggacat gaagccgagg
     7501 ttaggcgtct cgaagcggcc gacgagcggg aagacggcgg gcaggtctgc ctcgggcagg
     7561 ccgaaccaga gcgcgagcgt ggcggcgtac tgctcggttg acgtggtcgg tatccagcgg
     7621 ccgcggtcgt ccgcgtcgtc cgggccgccg agcgcgagca ctgggaaggt gccgtagaag
     7681 tcgccgccgc gcacggcgcc gcccattatg aggtggtggc tgccccacgc gtggtcggag
     7741 ccgaccgcag cgcccgagcc ggaagggtcg agcgtgcggc cgaagtcgga gagcgtgaag
     7801 gtcgtcacgc tgtcggccac gcccagtcgg acggtcgcgt cgtggaacgc cttcatggcc
     7861 ttgctcagtt ggagcagcag cacgccatgg ccgttcaagg ccgagtgctg gttgctgtgg
     7921 tggtcgaagc ccggtatcag gcagaagaag atctggcggc gcacgcccaa ctgcgcgcgc
     7981 aggctgatga gcttcgccac ctgcctgagc tggaagccta tcggggtggg cgggaagtcc
     8041 gtctgcccgg cttcgagcgg cgggagcacg gggtctgtcg ggatggcctg tcgcgcccgc
     8101 gcggcctgct cgaccggctc ggctgcggcg ccgagcaggc cgcccgtcgc gcccttcctt
     8161 atgttgttga aggcggcgat ggcggcttcg cggctcgaag ggaagacgta ggagccgtag
     8221 tcaatgctga aggcgtcgtg gagcggaagg ccggggttga ttacgagctg ccgcgtcagc
     8281 tcgcccgtcg tgaacaggct cgcgcccgcg accgagacgt tcatcggcag aagcggcgcc
     8341 gagccgttta agcccgccat caaatccgcc acgcgcccgc cccagccggt ctgcgcggcg
     8401 gagacgcacg cctgctgctg ccccaactga tccgggtgcg agaagagctg gtacgggtgg
     8461 ccgacgccgc tcctgtagag cgtgcgcgtc agcggccgca cgagcgtccc cgcgttgcac
     8521 aggacggcga ggcgcccctg cttgaagagg gcctgaagct ctacgaggct cgggtggaag
     8581 ccgtacgcga gcccctgctg gctcggcggc gagacgggca ggaggctcgc tcgcgggaca
     8641 gcgaggcccg acgatgcgcg cacggcggcg tagccgcccg gcgcgtcgta ctcgtcgagg
     8701 gggacgacgg tgttgttgcc gtcgttgccg ccttcgagga agacgcagac gagcgccttg
     8761 tagtcggagg cgtcggacgc gcgcgccagc gcgcccacca ggccgaacct ttcgagcccc
     8821 gcggcgagcg cggccgagcc ggcgagcgcg ccgcaggact taatcaaaaa attccttctc
     8881 gtctccgaca tctcgcctgc tcacttctgc aaatggtact gcggggagct aacgattaga
     8941 aagactgcca cccacgtgcg atccctcaga tagttcgggt aggtagccgg gtacgtctcg
     9001 acgacgcgga ttatctccga gcgcatggcc ggcgtcatcg tgccgtggag cagcagggcg
     9061 tccagcgcgg cgacgagctt tgcgggctcg gccgcgagcg ggtggaaggg ggtggtgttg
     9121 atgaaggtgc cggtcgtgtt ctctggcgtc gcgcgcgcgc ctatgccgcc gcggaagacc
     9181 atctgcgagg cgaaccagac gcgcccgagc accgtcgtgc tggtgtgagc gccgaactcc
     9241 gggcccctta gcgtcgtgcc ggggacggtg tagtcgtccg ggtagtagcc gaagacggtc
     9301 ggcggcttcc agatgtcctg ccccatgccg gccacccacg gcgtcaggta gccgtcgctc
     9361 tcgacgatgt tgttgatgcc ggggcctaag cccctcacgc cgaaggcgcg gcaaagcccc
     9421 gcggcgtaga gcgccggctc gcgcagtcgg ccgtaagccg ggtcggtctt tacgtcgccg
     9481 cgcgcctccg ggtctaagag tatcgcgcgc acgaccgatt tcaggtcgcc gcgctcccgt
     9541 gtgcagccgg cgtcggggta gaagccggcg cagttgtcat cgaagacggc ggagacgcgg
     9601 ccgacgtagg ccgggctcgg gttgcttgta acgaggtggc gtatgagccg ctggctcacg
     9661 aaggggccga cgttcgggtg gttgaagatg ttgtcgagcg cggccgacaa gtcctgcgcg
     9721 gcggtctgcc cggcggggag atgcgcgccg ccgagcaggg tcttcgcgcc tgcgtcgtgg
     9781 aagcgctcga cgggctgcat ggggtcgagg aagttgatga gcccctgcga gccggccggc
     9841 gggttcgcat agacccagcc ggtgaagacg cgcgcgaagt cgttaacggt cgcctgcgtg
     9901 taggcgggcg tgcggttccc ctgctcgtcg agccggggcg tgccgtcggc gttcaggagg
     9961 tcggggccga tggtgaagag ctgtaggatt tcgcgggcga agttctcgtt cggcttctcc
    10021 ttcgtgttgc cctctgagtc gaggaactcg cccatagcgg cgttgagcgt tacgtcatgc
    10081 atcaacgcgc ggaagctgcc gaaggcgttg cggtcgaggg cttgcaggta aggcgcgtac
    10141 cagctcgcct ggttcaaatc cttcgccgag acgacgaaaa cctggtggag ggcgaaggcg
    10201 acgcgctgcc gcaactggtc gcgcccgtag aaggcgttcc tgaagaagcg cgtctgcaac
    10261 gggtgcatcg tgtagttgtc gcgcaggcac gggtagtcgc tcccgcagta gaggcggctg
    10321 tcaatcggca cgagcggcag agtggggtag ccgctgggcg ccgcggcgaa ctgctcttcg
    10381 aggtatgcgc ggaggcccat cgccttcgcg cgctcgacct cggcgggcgt ggggccgaag
    10441 gaggactgtt cgaggaagcg cacggcgtcc gccgacgtgg ccgggccggt gtaagggtcg
    10501 ggcgtcgcgg ccgggagcgg cgcgggcggg acggccggcg cgggcgtagg caccgagccc
    10561 acgtcgtcgg gcgggccgcc gccctcgcgg cccacggcga gccgcacgcg gttgctcgtc
    10621 atgccgcgaa gggttacgcg cagcagcacg tcgcccgcgt cggccatcga ggggtcgagg
    10681 cggacggtga actgcgtcag ccccgcgaag ccggggacgg ggcccgcgtg ctcgaccttg
    10741 aggcggtagg tgcgcccccg cccgtcctcc gcctcggcgc cgaaggcgcc ggcagtctcg
    10801 cccacgtaca ggcggacgtt cgtggcgaag acgacgacgc gcgtggccgc gtccgcgccg
    10861 aaggggacgg gcgcgaccgc cgtgaagggg ccgggcgtca tgcggacggg gtcgagcgcg
    10921 acggcgcgcg tcgaatcggg ttcggtgacg aggacgggcg ccgcgccttc cgtctgcgcc
    10981 gcggcgcaca ggggcagcgc gaggcatagg ccgagcgcgc gtgcgagccg tgtcagttgc
    11041 gtgcgcgttc tcatctcgga cggggcgtca ggggagactt cgtttcgaga aggcgcgcgg
    11101 attatacaac gggctcgccc cgcgaggcgc gactaatttc cggcctgccc ccgagcccgt
    11161 gctcacgact ttttgcaaga ttttacaaac gggccggcgc gggctacata taatcgcgga
    11221 aatcaggagt tcgtggccgg gaggatttat gaaggagatg agaggcctgc tgtcggtagt
    11281 cgcttccggg ttgatggcgg cggcgctctg ctcggtcgct tcggcgcggc aggcatcggg
    11341 cggggcggag tggccgcagt ggcgtggccc gaaccgcgac ggcgtgtcga aggagacggg
    11401 gctcctcaag cagtggcccg agggcgggcc gccgctcgtg tggaaggcgc agggcgccgg
    11461 catcggctac tcttcgctcg cggtggcgaa cggccgcgtc tatacgatgg gccttcgcgg
    11521 cgaaagggag tacgtcatag ccttcgacgc ggcgacgggc aaggagctct gggctacgcc
    11581 gaacggctcg gcctaccgcg acagccgcgg cgacggcccg cgcggcaccc cgaccgttga
    11641 cggcgaacgc ctctacgcgc tcggcggcaa cggcgacctc tcgacgctcg acgcgaagac
    11701 gggcaaggtc gtgtgggcga tgaacgtcct cgagaagttc ggcgcgtcca acatcggctg
    11761 gggcataagc gagtcgccgc tcgtcttagg cgagaagctt ctgataaacc ccggcgggcg
    11821 cggcgcatcg ctcgtcgcgc tcgacaagcg cgacggccga gtgctctgga agagcgcgag
    11881 cgacaaggcc ggctactcgt ccgctatccc ggtgcaggcg ggcggcaaga cgcaggtcgt
    11941 cttcttcacg caggagcgcg ccgtcggcgt tgaccccgcg gacgggaaga ttctgtggga
    12001 gtacgcgaag ccctcgaacg acacggccaa cgtcgccacg ccggtcgcgc gcggcaaccg
    12061 cgtcttcatc tcgtcggact acgggacggg cgggggcgtc gtcgagataa agccagacgg
    12121 tgccggcgcc cgggaggtct atttcacgcg ggagatgcgc taccaccaca gcacctccat
    12181 tctcgtcggc gagcacctct acgggttctc gggcgcggtg ctgacggcca tgcgcttcga
    12241 cacgggcgag atagcttgga aggacaggag cgtcggcaag ggctcgctcg catacgccga
    12301 cgggatgctc tacgcgctga gcgagaacgg cgtcgtcggg ctgattgaag cgacgccggc
    12361 cggctaccgc gagcgcggcc gcttccagat accgcagggc tcgcgcaaca catgggcgca
    12421 ccccgtagtc gcgggcggcc gcctctacct ccgcgaccag gacaccatct acgccttcga
    12481 cgtgcggcag aagaagtaag acggcaacga gataggaaag agaagagggt tgacga
//
LOCUS       DASPKR010000082         2514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_397910, whole genome shotgun sequence.
ACCESSION   DASPKR010000082 DASPKR010000000
VERSION     DASPKR010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2514)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2514
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397910"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..254
                     /locus_tag="VD968_02425"
     CDS             <1..254
                     /locus_tag="VD968_02425"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYE13277.1"
                     /translation="VVPRAEVVAYAHEWAKKLSEGPAFAHAMTKQMIEGEHEMSLEGA
                     IEAEAQAQAVCMQHPDYREAYEAFVQRREPRFEGRPAEG"
     gene            254..970
                     /locus_tag="VD968_02430"
     CDS             254..970
                     /locus_tag="VD968_02430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13278.1"
                     /translation="MSIANFARAAPLLLCLAAAAAAQERQPDPSRHFQRAREIGDTTA
                     PGATFEFESSGYSYRIASNGAGRRMKGSDVRRFSLRLEGVDWIERVSYQEYQDNILLV
                     WWVNDGGGAAAYVARLEQPSMRARWKQLVPALNVMAVREQGSLYLNGYGFLGRLDLGT
                     GEYLWRLDHKESHDDFHRRRGREESGSEARKLMLPSSDFGPPEFDGDTVIYREVGQYK
                     RPPLKAVHVNRKSGKIVRIE"
     gene            989..2161
                     /locus_tag="VD968_02435"
     CDS             989..2161
                     /locus_tag="VD968_02435"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYE13279.1"
                     /translation="MARDSFIEETPFFADEHARLAAGVADFAAREVAPRETAAEERGE
                     DEHFREMLALLAQADLLRYSVARPAGHEPLDARALCVVREALAYRSAMADLAFVMQGL
                     GTYALSLAGSEHVRDFWLERARTGRAVAAFALTEPEAGSDVSNVQTTARREGDGYRID
                     GRKCFISNAGVADFYTVFARTGSRPDGRAQLSAFIVGARMPGFRVRARTRLVAAHPIG
                     EIEFESLRVPEEDRLGEEGDGFRLAMQTMDMFRASVGAAACGMARRALDEAVRYARGR
                     RQFGAALADHQLVQEKLARMQTELDAARLLVYRAAHLKDVGGTGLTRAASEAKLFATE
                     AAQRIVDEAVQIHGGYGLVRGSAVERLYRDVRALRIYEGTSEIQKLIIARELLREQ"
     gene            2190..>2514
                     /locus_tag="VD968_02440"
     CDS             2190..>2514
                     /locus_tag="VD968_02440"
                     /inference="COORDINATES: protein motif:HMM:NF024842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HYE13280.1"
                     /translation="MRINVIGGGPAGLYFALLMKRHDASHRVTVFERNPPGATFGWGV
                     VFSGRTLATLREADPESHRRIAESFEAWDNVDVVYRDTKISVRGNSFSGIARIKLLNI
                     LQERCA"
BASE COUNT          409 a          870 c          877 g          358 t
ORIGIN      
        1 gcgtggtgcc gcgcgcggag gtggtcgcct acgcgcacga gtgggcgaag aagctctccg
       61 agggccccgc gttcgcgcac gccatgacca agcagatgat cgagggcgag cacgagatgt
      121 ccctcgaggg ggccatcgag gccgaggcgc aggcgcaggc cgtctgcatg cagcaccccg
      181 actaccgcga agcctacgag gccttcgtgc agaggcgcga gccgcgcttc gagggtcgcc
      241 ccgccgaggg atgatgagca tcgcaaactt tgcgcgcgcg gccccgctcc tcctgtgcct
      301 cgcggccgcg gccgcggcgc aggagcggca gcccgacccg tcgcgccact tccagagggc
      361 acgcgagata ggcgacacga ccgcgccggg ggcgaccttc gagttcgagt cgtccggcta
      421 ctcctaccgc atagcctcca acggggccgg gcgccgcatg aagggcagtg acgtgcggcg
      481 cttcagcctg cgcctcgaag gcgtggattg gatagagcgt gtctcttatc aggagtacca
      541 ggacaacatc cttctggtct ggtgggtcaa cgacggcgga ggggccgcgg cctacgtcgc
      601 gcggctcgag cagccctcca tgcgcgcccg gtggaagcag ctcgtccctg ccctcaacgt
      661 catggccgtc cgcgagcagg gctccctgta cttaaacggc tacggctttc tcggcaggct
      721 cgacctcggg acgggcgaat acctctggcg gctcgaccat aaggagagcc acgacgactt
      781 tcaccgccgc aggggccgcg aagaaagcgg cagcgaagcc cgaaaactga tgctaccttc
      841 ttcggacttc gggccgccgg agttcgacgg cgacacggtg atttacaggg aggtcggcca
      901 gtacaagcgc ccgcctttga aggcggttca cgtcaacagg aagtcgggca agatcgtccg
      961 catcgagtag ggtctcggga agaccggcat ggcgcgcgat tcgttcatag aggagacgcc
     1021 ctttttcgcc gacgagcacg cgaggctcgc ggccggcgtg gccgacttcg ccgcgcgcga
     1081 ggtcgcgccg cgcgagacgg ccgccgagga gcgcggcgag gacgagcact tccgcgagat
     1141 gctagcgctg ctcgcgcagg cagacctcct gcgctactcg gtcgcccgcc ccgccggcca
     1201 cgagccgctc gacgcacgcg ccctctgcgt cgtgcgcgag gcgctcgcgt accgctcggc
     1261 gatggcagac ctcgccttcg tcatgcaggg cctgggaacc tacgccctta gcctcgccgg
     1321 ctccgagcac gtgcgcgact tctggctcga acgcgcgcgc acgggccgcg ccgtcgccgc
     1381 cttcgcgctc accgagcccg aggccggctc cgacgtgtcg aacgtgcaga cgaccgcccg
     1441 ccgcgaaggc gacggctacc gcatagacgg ccgcaagtgc ttcatctcga acgcgggcgt
     1501 ggccgacttc tacacggtct tcgcgcgcac gggctcccgg cccgacggcc gcgcgcagct
     1561 ctcggccttc atcgtcggcg cgcgcatgcc gggcttccga gtgcgcgctc gcacgcgcct
     1621 cgtagcggct caccccatcg gcgaaataga gttcgagagc ctgcgcgtcc ccgaggaaga
     1681 ccgtctaggc gaagagggcg acggcttccg actcgcgatg cagacgatgg atatgttccg
     1741 cgcgagcgtg ggcgcggccg cgtgcggcat ggcccggcgc gcgctcgacg aggcggtgcg
     1801 ttacgcgcga gggcgccggc agttcggcgc cgcgctcgcc gaccaccagc tcgttcagga
     1861 gaagctcgcg cgtatgcaga ccgagctcga cgccgcacgc ctgctcgtct atcgcgccgc
     1921 gcacctgaag gacgtgggcg gcacggggct gacgcgcgcc gcgagcgagg ccaagctctt
     1981 cgccacggag gccgcgcagc gtattgttga cgaggccgtg cagattcacg gcggctacgg
     2041 gctcgtgcgc ggctccgcgg tcgagcgcct ctaccgcgac gtgcgcgcgc tgcgaatcta
     2101 cgaaggcacc tccgaaattc agaagctcat catcgcccgc gagctgttaa gggagcagta
     2161 aagaagcctg cggcgggcgc cggcgacaca tgaggataaa cgtaatcggc ggggggccgg
     2221 cggggctcta cttcgcgctg ctgatgaagc ggcacgacgc gtcgcaccgc gtaacggtct
     2281 tcgagcgcaa cccgccgggc gcgacgttcg gttggggcgt ggtcttctcc ggcaggacgc
     2341 tcgccactct gcgcgaggca gaccccgagt cgcaccgccg catcgccgag agcttcgagg
     2401 cgtgggacaa cgttgacgtg gtctatcgcg acacgaagat aagcgtccgc ggcaacagct
     2461 tctccggcat cgcgcgcata aagctcctca acatcctgca ggagcggtgc gccg
//
LOCUS       DASPKR010000083         3043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_786464, whole genome shotgun sequence.
ACCESSION   DASPKR010000083 DASPKR010000000
VERSION     DASPKR010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3043)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3043
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_786464"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1353
                     /locus_tag="VD968_02445"
     CDS             <1..1353
                     /locus_tag="VD968_02445"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: protein motif:HMM:NF006006.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HYE13281.1"
                     /translation="ALAIARERDEEARQGRLRGPLHGVPVLIKDNIDTADRMKTTAGS
                     LALVNARPQRDAFVVERLRQAGAVIIGKTNLSEWANFRSTRSTSGWSARGGQTRNPYA
                     LDRNPCGSSSGSGAAVAANLCLAAVGTETDGSIVCPASACGIVGIKPTLGMVSRSGII
                     PIAHSQDTAGPMARTVADAAALLQALAGFDARDRETERGAALRDADFARSLDPAALRG
                     ARIGVARKSFGFNDRVDKLMEEALDVMKRSGAVLVDPADLPTHGKFDDSEFEVLLYEF
                     KADLNKYLASLAPGGDHPRTLAGLIEFNERNSDREMPYFGQEIFIRAEKKGPLTERAY
                     RAALRKNHLLARAQGIDAVMRRHRLDAIVAPTGGPAWTTDLVNGDHFSGGSSSPAAVA
                     GYPNITVPAGFVHGLPVGISFFGRAFTEARLIGLAYAYEQLTKHRQPPRLSPGAGLRG
                     "
     gene            1535..>3043
                     /gene="boxC"
                     /locus_tag="VD968_02450"
     CDS             1535..>3043
                     /gene="boxC"
                     /locus_tag="VD968_02450"
                     /EC_number="4.1.2.44"
                     /inference="COORDINATES: protein motif:HMM:TIGR03222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_process: GO:0010128 - benzoate catabolic process via
                     CoA ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-epoxybenzoyl-CoA dihydrolase"
                     /protein_id="HYE13282.1"
                     /translation="MINFETAPERYKHWKLAVEGRVATLSMDVQEDETLAEGYKLKLN
                     SYDLGVDIELADAVQRLRFEHPEVKVVVVTSLKPRIFCAGANIYMLGTSSHAFKVNFC
                     KFTNETRCAIEDASVHSGQRYVAALNGTASGGGYELAIACDEIYLVDDGNSAVSLPEV
                     PLLGVLPGTGGLTRLVDKRKVRRDRADVFSTLAEGLKAKRAKEWGLIDGYFPTSKFQE
                     GVEARVRELVGADGDGRAGPGIKLNPFDVEVSAGGREYRHVSLRVNRERRYADLTMRG
                     PEGAQPESADEVLRLGDSYWPLRAYRELDDALLHLRMNEPEVGLVCLRTAGDAEGVLA
                     VDRFLAANKDYWLVREIILNMARVLRRMDLTAKSFFALAEPGGCFAGNLLELLLASDR
                     SYMLNDPGERVELAVSALNSGALPMSNGLTRMQSRFLAEPERAREALGHEGPFSTEEA
                     EEAGLVTFAPDDLDWEDEVRVAIEERTSLSPDALTGMEASLRFAGPETLDTKI"
BASE COUNT          513 a         1083 c          997 g          450 t
ORIGIN      
        1 gcgctcgcca tcgcccgcga gcgggacgag gaggcgcggc agggccgact gcgggggccg
       61 ctgcacggcg tccccgtcct cattaaggac aacatagaca cggccgaccg catgaagacg
      121 acggcaggct cgctggcgct cgtcaacgca cggccgcagc gcgacgcctt cgtcgtcgag
      181 cggctccggc aggccggcgc cgtcatcatc ggcaagacca acctgagcga gtgggcgaac
      241 ttccgctcga cgcgctcgac gagcggctgg agcgctcgcg gcggccagac gcgcaacccc
      301 tacgcgctcg accggaaccc ttgcggctca agctccggct ccggcgccgc cgtcgccgcg
      361 aacctctgcc tcgccgcggt cggcaccgag acggacggct caatcgtatg ccccgcttcg
      421 gcctgcggca tcgtcggcat aaagccgacc ctcgggatgg tgagccgctc cggcataatc
      481 cccatcgcgc acagccagga cacggccggc ccgatggccc gcaccgtggc cgacgcggcc
      541 gcgctgcttc aggccctcgc cggcttcgac gcgcgcgacc gcgagaccga gcgcggcgcc
      601 gccctgcgcg acgcggactt cgcgcgctcg ctcgaccccg cggcgctgcg gggcgcgcgc
      661 ataggcgtcg cgcgaaagtc cttcggcttc aacgaccgcg ttgacaagct catggaagag
      721 gcgctcgacg tgatgaagcg ctccggcgcc gtcctcgttg acccggccga cctgcccacg
      781 cacggcaagt tcgacgactc cgagttcgag gtgctgcttt acgagttcaa ggcagacctc
      841 aacaagtacc tcgcctctct cgctccgggc ggcgaccacc cgcgcacgct cgccggcctc
      901 atcgagttca acgagcgcaa cagcgaccgc gagatgccct acttcggtca ggagattttc
      961 atacgcgccg agaagaaagg gccgctcacg gagcgcgcct accgcgcggc gctcaggaag
     1021 aaccacctgc tcgcgcgcgc tcaggggata gacgccgtca tgcgcaggca ccgcctcgac
     1081 gcaatcgtcg cgcccaccgg cggccccgca tggacgacag acctcgtgaa cggagaccac
     1141 ttctcgggcg gaagctcaag cccggcggcg gtcgccggct acccgaacat cacggtgcca
     1201 gccggcttcg tccacggcct gcccgtcggc atctccttct tcggccgggc cttcaccgaa
     1261 gcccggctca tcgggctcgc ctacgcatac gagcagctga ctaagcaccg ccagcccccg
     1321 cgcctctcgc ccggcgccgg cctgcgcggc taagacattc accgcggagg cacaaaggca
     1381 cgaaagaaat cccaatttct ttttcgtgcc tttgtgcctc cgcggtgagt attcccccgc
     1441 cccgcgcgcg aatgcattcc ggcccgcaag cctgtataat tgccgtttcg tgccagcgaa
     1501 ctcattccga ccgtcggaga ctgtgtgaac cgaaatgatt aatttcgaga ccgcgccgga
     1561 gcgctacaag cactggaagc tggccgtcga gggccgtgtg gcgacgcttt cgatggacgt
     1621 gcaggaggac gagacgctcg cggaaggcta caagctcaag ctcaactcct acgacctcgg
     1681 cgttgacata gagttggccg acgccgtcca gcgcctgcgc ttcgagcacc ccgaggtcaa
     1741 ggtcgtcgtc gtcaccagcc tcaagccccg catcttctgc gccggcgcaa acatctacat
     1801 gctcggcacg tcaagccacg ccttcaaggt caacttctgc aagttcacga acgagacgcg
     1861 ctgcgccatt gaggacgctt ccgtccattc gggccagcgc tacgtcgccg cccttaacgg
     1921 cacggcctcg ggcgggggct acgagctcgc gatagcctgc gacgagattt acctggttga
     1981 cgacggcaac tccgccgtct ctctgcccga agtccccctg ctcggcgtgc tgcccggcac
     2041 gggcgggctc acgcgcctcg ttgacaagcg gaaggtcagg cgcgaccgcg ccgacgtgtt
     2101 ctcgactctc gccgagggcc tcaaggccaa gcgcgcgaag gagtgggggc tgattgacgg
     2161 ctacttcccg accagcaagt tccaggaggg cgtcgaggcg cgggtgcgcg agctggtcgg
     2221 ggcggacggc gacggtaggg cggggccggg aataaaactc aaccctttcg acgttgaggt
     2281 gagcgcgggc gggcgcgagt acaggcacgt ctcgcttcgc gtcaaccgcg agcggcgcta
     2341 cgcggacttg accatgcgcg gcccggaggg cgcgcagccc gagtcggccg acgaagttct
     2401 caggctcggc gactcgtact ggccgctgcg cgcctaccgc gagcttgacg acgccctgct
     2461 ccaccttcgc atgaacgagc ccgaagtcgg cctggtctgt ctgcgcaccg cgggcgacgc
     2521 ggagggcgtg ctcgcagttg accgcttcct cgcggccaac aaagactact ggctcgtgcg
     2581 cgagatcatc ctcaacatgg cgcgcgtgct gcgccggatg gacttgacgg ccaagagctt
     2641 cttcgcgctg gccgagccgg ggggctgctt cgccgggaat ctgcttgagc ttctgctcgc
     2701 ctccgaccgg agctacatgc tcaacgaccc cggggagagg gtcgagctgg ccgtgagcgc
     2761 gctaaactcc ggggcgctgc cgatgtcgaa cgggctgacg cgcatgcagt cgcgcttcct
     2821 cgccgagccg gagagggcgc gagaggcgct cggacacgaa ggcccgttct cgaccgagga
     2881 ggcggaggag gcggggctcg tgaccttcgc gccggacgac ctcgactggg aggacgaggt
     2941 gcgcgtcgcc atagaggagc gcacgtcgct ctcgcccgac gcgcttacgg ggatggaggc
     3001 aagccttcgc ttcgccggcc ccgagacgct cgacaccaaa atc
//
LOCUS       DASPKR010000084         3308 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1304147, whole genome shotgun sequence.
ACCESSION   DASPKR010000084 DASPKR010000000
VERSION     DASPKR010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3308)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3308
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1304147"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(197..631)
                     /locus_tag="VD968_02455"
     CDS             complement(197..631)
                     /locus_tag="VD968_02455"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HYE13283.1"
                     /translation="MSTFETKKQVSAGGVVVRRRHGKVEVALISVGERARWQLPKGLV
                     GRGETPEQAALREVREETGLSCEVVAPLDTVEYWYFSKGGGGRVRFHKHVHFFLMSYR
                     SGDVAEHDEEVNEARWFEAGEALEALAFKGEREVLAQVLGML"
     gene            complement(667..849)
                     /locus_tag="VD968_02460"
     CDS             complement(667..849)
                     /locus_tag="VD968_02460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13284.1"
                     /translation="MSKSFKCEVCRKAAETLHMRNSDGKWVCTFCIPERELDECEGLR
                     ERLGLKPARSQRRKAA"
     gene            complement(870..1208)
                     /locus_tag="VD968_02465"
     CDS             complement(870..1208)
                     /locus_tag="VD968_02465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13285.1"
                     /translation="MKIEEKKRRADRVEEFTAAEQRSARAERVKVFEAEPYGWIAQSE
                     SGAERGYHLFRDPETRTLACTCADFIFRGNAEPGFECKHVSAVLKYLGRQHLRFFYDP
                     RQQEQRSRAA"
     gene            complement(1289..1813)
                     /locus_tag="VD968_02470"
     CDS             complement(1289..1813)
                     /locus_tag="VD968_02470"
                     /inference="COORDINATES: protein motif:HMM:TIGR01662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HYE13286.1"
                     /translation="MAETGAGLLPVKLYIFDADGTLRRSTVPGRPCPNKPGEWELIPG
                     VRERLAGIDWGPRGARFGVATNQGGVGLGYLSLGVARGMLVEMVEQAFGLRPPPGSIE
                     ICWHAPFRNCPCRKPKPEMLLRLMRRFRAGEHETLFVGDMETDEEAARRAGTRFAWAH
                     DFFGWGDEQPACPL"
     gene            1928..2464
                     /gene="idi"
                     /locus_tag="VD968_02475"
     CDS             1928..2464
                     /gene="idi"
                     /locus_tag="VD968_02475"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:NF002995.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004452 - isopentenyl-diphosphate
                     delta-isomerase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HYE13287.1"
                     /translation="MPLEKVILVDELDREVGSAEKLRAHRDGAMHRAFSVFVFDSAGR
                     LLLQKRAKGKYHSGGLWSNTCCGHPRPGETVASAAARRLREEMGFGCELRPAFEFVYR
                     AELDGGLIEHEYDHVLVGRFDGEPRPEASEVEEWAWLGLEELRRELLTSPAGYSFWLR
                     AAMRSGDWRKLDSMLRAA"
     gene            2659..3255
                     /locus_tag="VD968_02480"
     CDS             2659..3255
                     /locus_tag="VD968_02480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13288.1"
                     /translation="MRAFRPRALGATLLLLLASAPYVVADIARPAESKPDYNRVRTDL
                     PRRHMLIESRPEAREARLRVPRSLLEELAPASSQATGGAALFGATPARTVVAGVFLSL
                     SLALAGMLLARSRRQAVGRVAVVAVGSLVCAAAFAVGALANVGPPPRPNALDPQTLIK
                     AVSAGATISGDVRVEIVEDGDELKLVVPTRKRAGGDDE"
BASE COUNT          509 a         1129 c         1099 g          571 t
ORIGIN      
        1 aggactgcga cggggttttc aaagacatca ccgtcatagt ccagaccgcg cacgccatgc
       61 gcaacatgaa cggcatcgcc tacccggatg agaccgtatt ctgggagcgc ctgagcatca
      121 ccaagcgcat agtccactaa ctcctcggcg cggcagttcg ggcggagcgg cggctcgcgt
      181 gtccgagcgc cgcgcgtcag agcattccga gcacctgcgc cagaacctcc cgctcgccct
      241 tgaacgcgag cgcctccaaa gcctcaccgg cctcgaacca gcgggcctcg ttcacctctt
      301 cgtcgtgctc tgccacgtcg cccgaccgat agctcatcag gaagaagtgc acgtgcttgt
      361 ggaagcgcac gcgcccgccg cctcccttcg agaagtacca gtattctacg gtgtcgagcg
      421 gcgctactac ctcgcagctc agccccgtct cctctcggac ttcgcgtaac gcggcctgct
      481 ctggcgtctc gcctcggccc acaagtcctt tcggcaactg ccagcgcgca cgctccccga
      541 cggaaatcag cgcgacttcc accttcccgt gccgccgcct aacgacgact ccgccagcgg
      601 agacctgctt cttcgtctcg aacgtgctca cggtaagggg attatagacg cagcccgtgc
      661 gggatttcag gcggctttgc ggcgctgcga gcgggcgggc ttaagaccga ggcgctcgcg
      721 caggccctcg cactcgtcca actcgcgctc ggggatgcag aaggtgcaga cccacttgcc
      781 atccgagttg cgcatgtgga gcgtctcggc ggccttgcgg cagacttcgc acttgaaact
      841 cttactcatg gcttctggtc aaactcctgt tatgccgcgc gcgagcgctg ctcctgctgg
      901 cgcgggtcgt aaaaaaagcg taggtgctgg cggccgaggt acttgagcac cgccgagacg
      961 tgcttgcact cgaagccggg ctcggcgttg ccgcggaaga tgaagtcggc gcaggtgcag
     1021 gcgagcgtgc gcgtctcggg gtcgcggaag aggtggtagc cgcgctccgc gcctgactct
     1081 gactgcgcga tccagccgta aggctccgcc tcgaaaacct tcacgcgctc ggcccgcgcc
     1141 gagcgctgct cagccgcggt gaactcctcc accctgtccg cacgtctctt tttctcctct
     1201 attttcatgg gacgaattat agcacaaggc gtccgtgggt ggaacagcgt ttcatgtgcg
     1261 ggacagagat ttttttggcg ggaaagcttc agagagggca ggccggctgc tcgtcgcccc
     1321 agccgaagaa gtcgtgagcc cacgcgaagc gcgtgccggc gcggcgggcg gcttcttcgt
     1381 ccgtctccat gtcgccgacg aagagcgtct cgtgctcccc tgcgcggaag cggcgcatga
     1441 ggcgcagcag catttcgggc ttgggcttgc ggcaggggca gttgcggaag ggcgcgtgcc
     1501 agcagatttc gattgagccg ggcggcggcc gcaggccgaa agcttgctcg accatctcga
     1561 cgagcatgcc ccgcgcgacg ccgaggctca ggtagccgag gccgacgccg ccctgattcg
     1621 tcgccacgcc gaagcgcgcg ccgcgcggcc cccagtctat cccggccagc cgctcgcgca
     1681 cgccgggtat caactcccac tcgcccggct tattggggca gggccgtccc ggcacggtcg
     1741 agcgccgcag cgtcccgtcc gcgtcgaaga tgtagagctt gacgggcagc agccctgccc
     1801 ctgtctcggc catgccgcgg agtctaagcc cgaacctttg agtatcgctg ttgcttttgt
     1861 ggagaatttg cgagcaggtc gagggccgtc gcttgacgtt tggcgcgggg gcgggcaaaa
     1921 cagtggggtg ccgttggaaa aggtcatact cgttgacgag ctggacaggg aagtgggctc
     1981 ggccgaaaag ctccgggcgc acagggacgg ggccatgcac agggccttct cagtcttcgt
     2041 gttcgactcc gcggggcggc ttctgctaca aaagagggcg aaggggaagt accactcggg
     2101 cgggctctgg tcgaacacgt gctgcgggca cccccggccc ggcgagacgg tcgcgtctgc
     2161 ggcggcgcgc cgcctgcgcg aggagatggg cttcggctgc gagctgcggc ccgccttcga
     2221 gttcgtctat cgcgccgagc tcgacggcgg cctaatcgag cacgagtacg accacgtcct
     2281 cgtcggccgc ttcgacggcg agccgcgccc tgaagcctcg gaggtcgagg agtgggcgtg
     2341 gctcggcctc gaagagcttc ggcgcgagct tctcacgagc cccgcaggct acagcttctg
     2401 gctgcgcgcc gcgatgcgct cgggcgactg gcgcaagctc gactcgatgc tgcgcgccgc
     2461 ctgacgcggc ccgccacggc tgcgatgttg acgacagcag cgccgtcatc aatcctcttt
     2521 cgccgccaac cctctcctcc gtttcatcat caattcgatt gacacggggc gcgcggctgg
     2581 gctagatatc tccggccccg gttcgtaatg caaccctcgc cgcctgtaac gttaagattc
     2641 ttcccaagga gttcccctat gagagccttc cgccctcgcg cgctcggcgc gacgcttctg
     2701 cttttgctcg cctccgcgcc ctacgtcgtc gcagacatcg cgcgcccggc cgagagtaag
     2761 cccgactaca accgcgtccg cacagacctg ccgcgccgtc acatgctaat cgagtcgcgg
     2821 cccgaggcgc gcgaggcgag gctccgcgtg ccgcgctccc tgctcgaaga gctggcgccc
     2881 gcttcttcgc aggcgactgg gggggccgcc ctcttcggcg cgacgcccgc gcggacggtc
     2941 gtcgcgggcg tcttcctctc gctctcgctg gcgctcgcgg ggatgctgct cgcgcgctcg
     3001 cgccgccagg ccgtggggcg cgtggccgtc gtcgccgttg ggagcctggt gtgcgcggcc
     3061 gccttcgcag tcggcgcgct tgccaacgta ggcccgccgc cgcggccgaa cgccctcgac
     3121 ccgcagacgc taatcaaggc cgtctcggcg ggcgcgacga tttcgggcga cgtgcgcgtc
     3181 gagattgtcg aggacggcga cgagttgaag ctcgtagtcc ctacgaggaa gcgcgcgggc
     3241 ggtgacgacg agtagcatgc agagcgttgt cgagttgaag ggcttgcggc aaagcggcga
     3301 gggcgcgg
//
LOCUS       DASPKR010000085         5134 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_9331, whole genome shotgun sequence.
ACCESSION   DASPKR010000085 DASPKR010000000
VERSION     DASPKR010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5134)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5134
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9331"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..852)
                     /locus_tag="VD968_02485"
     CDS             complement(<1..852)
                     /locus_tag="VD968_02485"
                     /inference="COORDINATES: protein motif:HMM:NF017321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYE13289.1"
                     /translation="MSPRRKDTLFEEPPRAEAPPAEGAPLAERMRPRTLEEFVGQRHL
                     TGEGRVLRRVIEGGGLLPSLILWGAPGTGKTTLARLLALRTDSLFVPLSAVFSGVKDL
                     RAAIAEAREEKRLGRRTILFVDEIHRFNKAQQDALLPAVEDGTVTLIGATTENPSFEV
                     IGALLSRSRTLVLEPLNEEDVLTLLRRALEDEERGLARLRPVVSDELLARMAHAAGGD
                     ARVALTSLEAAVEATEPGKGGERVVTEETVAEALGRARYAYDKGGEEHYNLASALIKS
                     LRNSDTDA"
     gene            1060..1266
                     /locus_tag="VD968_02490"
     CDS             1060..1266
                     /locus_tag="VD968_02490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13290.1"
                     /translation="MNNAKDMLRIVGIILLGLFVLVVGVPLVLTAAGIVVSTIIWLAV
                     LLIKVAVTLAVIYLVLVGVRALLR"
     gene            1377..2102
                     /locus_tag="VD968_02495"
     CDS             1377..2102
                     /locus_tag="VD968_02495"
                     /inference="COORDINATES: protein motif:HMM:NF018389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1176 domain-containing protein"
                     /protein_id="HYE13291.1"
                     /translation="MMKRGSAGALLALALGAAAAGGCARQGATTGAGAGATPAAKAEN
                     ATARQTASPAQQTPPPPQQPTARAATPPKSGELTREDRNAWRGILRWPDDCERAYERT
                     SASVGGAAKLEFYELASGRHLVRVTCAGGAYQPSQVFALLDETGAQPSAKVIRFEAYE
                     SPGDDLEKVEAEELWGLADFDAKTKRLRVLNKFRGPGDCGTLATYAFNETGAKLVELR
                     AKTRCDGRGAEDPESWKKIVPAP"
     gene            2229..2804
                     /locus_tag="VD968_02500"
     CDS             2229..2804
                     /locus_tag="VD968_02500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13292.1"
                     /translation="MKFDRKKFFDEYKSRFATKLNQSQVDGIEQLLAFIENDPAMTDV
                     RWIAYMMATVKHECAERWQPIEEFASGQQYEGRKDLGNTEKGDGRRFKGRGYVQITGR
                     ANYRKFSQRLSIDLVGNPLLALDPPTSYKIASLGMRQGLFTGKALIDYIHDSVCDYRN
                     ARRIINRLDKADKIKGHAEKLELALRASQLS"
     gene            complement(2897..5056)
                     /locus_tag="VD968_02505"
     CDS             complement(2897..5056)
                     /locus_tag="VD968_02505"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HYE13293.1"
                     /translation="MMASLRRRSAPEKHEDDSGRPAARPGASREPASRALSQPPLYFT
                     NLSALRLAADDGPRRAMTKAARPDVPVSAPDDPSEREADRVAEQVMRAPAPAVQRACA
                     CGGACSACKSPAVEEEEEAGVVRPKRAAGPAGAQAGTAPPGVRDALGSPGRPLDAATS
                     AFFGERFGYDFGQVRVHTGAEAAASAESLGALAYTFGRDVVFAEGRYEPHTEAGRRLL
                     AHELTHVVQQRPGVVQRACSPDNTRDYDARAAAARRHAAYRALRAPARAVAEDIIRIA
                     RSRDNCLYYMEQLERLLNTPDAPREEVAQEQSEETQVEAAQEQQRLQQPAAQSVSNVE
                     EERSAASGAAGALTRRRGRGGVFFYVDQRDPNRIVVRARVRLQARGRGSAQDVANVRS
                     LEDGIEKHSSTTGYTVDLVFVDAGGPDVFTVGVDPSQPVTATNWVGDDLGLAHELHHL
                     LGLGDRYDYITSHAANPTMPMADRLHWFRVQLRQTEPENPESIMGGGAHPLDDDVCRV
                     AGLDLATCTTARQQRRAIEAARHQAFIRCQRAYEILSGITPASPFDRPGYPTRNQLDQ
                     AGAWTLARRLFGEAVSLDQLTEIVGQMRSRLTPGLVIEAAPAGDAQCSNRAGYVTGMR
                     PPVRLCPTFFTDSAEQQVRTMIHEAAHLVRISEASGESYCGMYDCQTSCGGFNTADTW
                     AHFIHCLSTGRADSAALRPPPQPPPLPPGGRLPHPVP"
BASE COUNT          797 a         1723 c         1832 g          782 t
ORIGIN      
        1 ggcgtccgtg tccgagttcc gaagggactt gatgagcgca gacgcgaggt tgtaatgctc
       61 ctcgccgccc ttgtcgtagg cgtaacgcgc gcggcccagg gcctccgcga ctgtctcctc
      121 ggtcactact ctctcgccac ccttgcccgg ctccgtcgcc tcgacggccg cttcgagcga
      181 ggtgagcgcc acgcgcgcgt cgccacccgc ggcgtgcgcc atgcgggcga gcagttcgtc
      241 cgaaactacg gggcgcagcc gcgcgagccc gcgctcctcg tcctctagtg cgcggcgcag
      301 gagcgtgagc acgtcctcct cattcaaggg ctccaggacg agggtgcggc tgcgcgagag
      361 gagggcgcct atgacctcga acgaggggtt ctctgtcgtc gcgccgatga gcgtgacggt
      421 gccgtcctct acagcgggca gcagagcgtc ctgctgcgcc ttgttaaagc ggtgaatctc
      481 gtcaacgaag aggattgtgc ggcggccgag ccgcttctcc tcgcgcgcct cggcgatggc
      541 cgcgcgcaag tctttgacgc cggagaagac ggccgagagc gggacgaaga gcgagtcggt
      601 gcgaagggcc agcaggcggg cgagcgtggt cttgcccgtg cctggcgcgc cccagagtat
      661 gagcgagggc aagagccctc cgccttcgat tacgcggcgg agcacgcgcc cctcgcccgt
      721 caggtgccgc tggccgacga actcttcgag cgtgcgcggg cgcatgcgct cggccagggg
      781 cgcgccctcg gcgggcggcg cctccgcgcg gggcggctcc tcgaaaagcg tgtctttcct
      841 gcggggcgac atgaccgaag ttttatcggg ggaacgggga cgagcttagc ataaaaaggc
      901 gcgcgccggg cggggggcgg gcgacataat tttgtgacta caaaagactg gcggcgggtg
      961 tagaatcttg gacggaacga tgactcaccc gccttcgtat agggtggcgt gacagacgct
     1021 gccccttaag gattcgggca gcgtcagtga ggtgaaatta tgaataacgc aaaagacatg
     1081 cttcgtatcg tcggaataat tctcctgggg ctgttcgtgc tcgtcgtggg cgtcccgctc
     1141 gtgctgaccg cggccggcat cgtcgtcagc acaatcatct ggctagcggt gctcctcata
     1201 aaagtcgccg tgacgctcgc ggtcatctac ctcgtcctcg tgggcgtgcg cgcgttgctg
     1261 cgctgaggcg cccgggcggg ggcggaaact cccgtaaaaa aacttgaagc aaaagcgttg
     1321 cccgtgcgat agagtgcacg ggcaacgctt ttcgcttttg aggaggcaca gccgggatga
     1381 tgaagagggg ttccgcgggc gccctgctcg cattggcgct gggcgccgcc gcggcgggcg
     1441 ggtgcgcgag gcagggcgcg acgacggggg cgggcgccgg cgcgacgccg gccgctaagg
     1501 ctgagaacgc gacggcgcgg cagacggctt cgcccgcgca gcaaacgcct ccgccgccgc
     1561 agcagccaac cgcgcgcgcc gcgacgccgc cgaagagcgg cgagctgacg cgcgaagacc
     1621 gaaacgcctg gcgcgggatt ctgcgatggc cggacgactg cgagcgcgcg tacgagagga
     1681 cttccgcgag cgtgggcggc gcggcgaagc tcgagttcta cgagcttgcg tcgggccgcc
     1741 acctcgtgcg cgtgacgtgc gcgggcggcg cttaccagcc gtctcaggtc ttcgccctcc
     1801 tggacgagac cggcgcccag ccttcggcga aggtcatacg cttcgaggct tacgagtcgc
     1861 caggcgacga cctcgaaaag gtcgaggctg aggagctttg gggcctcgcg gacttcgatg
     1921 cgaagacgaa gcggctgcgc gtcctcaaca aattccgagg ccccggcgac tgcggcacgc
     1981 tcgccacata cgccttcaac gagacgggcg ccaagctcgt cgagcttcgg gccaagacgc
     2041 gttgcgacgg ccgaggcgcc gaagacccgg agagctggaa gaagatcgtc ccggcccctt
     2101 gaggcggtcg gggagcggcg ccacgaaagg gttgcaatcg tcgtcgcaat cgggtagctt
     2161 gcagcgcgct cagccagttc tcttaaacgc caagctctcc aacccttccc acccgaacgg
     2221 aggctgcaat gaagttcgac cgcaagaagt tcttcgacga gtacaagtca cgcttcgcca
     2281 cgaaattaaa ccagagccag gtggacggca tcgagcagct cctcgccttc atcgagaacg
     2341 acccggcgat gacggacgtg cgctggatcg cttacatgat ggcgaccgtc aagcacgagt
     2401 gcgccgaacg ctggcagccg atagaggagt tcgcctcggg gcagcagtac gaggggcgca
     2461 aagacctcgg caacacagag aagggcgacg ggcgccgctt caaggggcgc ggctacgtgc
     2521 agataacggg gcgcgccaac taccgcaagt tctcgcagcg cctgagcatt gacctcgtcg
     2581 ggaacccctt gctagcgctc gacccgccca cgagctacaa gatagccagc ctcggcatgc
     2641 gccaggggct ctttaccggc aaggccctca ttgactacat acacgactcc gtctgcgact
     2701 accgcaacgc gcgccgcatc atcaaccgtc tcgacaaggc cgacaagata aagggccacg
     2761 ccgagaagct cgagctcgcc ctgcgcgcca gccaactctc ctgacgcgag cccgaagatg
     2821 aaaaaggggc ggcggcgagc cggttaaagg cccgcccgcc gcctctatgt tcgtggcagc
     2881 gccgtcgttt aattcttcaa ggaaccgggt ggggcagcct gccgccgggc gggagcggcg
     2941 ggggctgcgg cggcggcctg agcgccgcag agtcggcgcg ccccgtgctc aggcagtgga
     3001 tgaagtgcgc ccaggtgtcg gccgtgttga acccgccgca agaggtctgg cagtcgtaca
     3061 tgccgcagta agactcgccg ctcgcctcgc ttatcctgac gaggtgggcc gcctcgtgga
     3121 tcatggtgcg cacctgctgc tcggcggagt cggtaaagaa tgtcgggcac agtcgcacgg
     3181 gcgggcgcat gccggtcacg tagccggcac ggttactgca ctgtgcgtcg ccggcgggcg
     3241 ccgcctctat caccagcccc ggcgtcaggc gcgagcgcat ttggccgact atctccgtga
     3301 gctggtcgag cgagaccgcc tcgccgaaca gccgcctcgc cagcgtccaa gcgccggcct
     3361 ggtctagctg gttcctcgtc gggtagccgg ggcggtcgaa ggggctggcg ggcgtgatgc
     3421 cggagagtat ctcgtaggcg cgctggcagc gtatgaacgc ctggtggcgc gccgcctcta
     3481 tcgcgcggcg ctgttgccgg gccgtcgtgc acgttgccag atcgagcccc gccacgcggc
     3541 aaacgtcgtc gtcgagcggg tgcgcgccgc cgcccatgat ggactcaggg ttctcgggct
     3601 cggtctgccg tagctgcacg cggaaccagt gcaggcggtc ggccatcggc atggtcgggt
     3661 tggccgcgtg ggatgttatg tagtcgtagc ggtcgccgag cccgagcagg tggtgcagct
     3721 catgggcgag accgaggtcg tcgccgaccc agttggtcgc cgtcacgggc tgcgagggat
     3781 caacgccgac cgtgaacacg tcggggccgc ccgcgtccac gaagacgagg tcaacggtgt
     3841 agcccgtggt ggaggagtgc ttctcgatgc cgtcctccaa gctgcggacg ttcgccacgt
     3901 cctgcgcgct gccgcggccc ctcgcctgaa ggcgcacgcg cgcgcgcacg acgatcctgt
     3961 tcgggtctct ctggtcaacg tagaagaaga cgccgccccg cccgcgccgc cgcgtcagcg
     4021 cgccggccgc cccggaggcg gcgctgcgct cctcctcgac gttcgacacg ctctgcgcgg
     4081 cgggctgctg tagcctctgc tgctcctggg cggcctcgac ctgcgtctcc tcggactgct
     4141 cctgggccac ttcctcgcgc ggggcgtccg gcgtgttcag cagccgctcc aactgctcca
     4201 tgtagtagag gcagttgtcg cgcgagcgcg cgatgcggat gatgtcttcc gcgacggcgc
     4261 gggcgggcgc gcgcaaggcc ctgtaggccg cgtgccgtcg cgcggccgcg gcccgggcgt
     4321 cgtagtcgcg cgtgttgtcg gggctgcaag ccctctggac gacgccgggg cgctgctgca
     4381 cgacgtgcgt cagctcgtgc gcgagcagcc gcctgccggc ctccgtgtgc ggctcgtagc
     4441 ggccctcggc gaacaccacg tcgcgcccga aagtgtaggc cagcgcgccc agagactcgg
     4501 ccgaggccgc cgcctcggcg cccgtgtgga cccgaacctg cccgaagtcg tagccgaaac
     4561 gctcgccgaa gaaagcggaa gtggccgcgt cgagcggccg gcccggactg ccgagcgcgt
     4621 cgcgcacgcc cggaggcgca gtgccggcct gcgcgcccgc tggccctgct gcgcgcttcg
     4681 gccgcaccac cccggcctct tcctcttcct ctaccgcggg agacttacac gccgagcacg
     4741 ccccgccgca ggcgcacgcg cgctggacgg ccggcgcggg cgcgcgcatg acctgttcgg
     4801 cgacgcggtc ggcctcgcgc tccgaagggt cgtcgggcgc gctgacgggg acatcgggcc
     4861 tcgccgcctt ggtcatagcc cggcgaggcc cgtcgtcggc ggcgaggcgg agcgcggaca
     4921 ggttcgtgaa gtagaggggc ggctgtgaga gggcgcgcga cgcgggctcg cgcgaggcgc
     4981 cggggcgcgc ggccgggcgg ccgctgtcgt cttcgtgctt ctcgggagca ctccgcctgc
     5041 gcagtgaggc catcatctct aacgctcctt cccggcgccg cccgtcgcgc ggcggccggc
     5101 gtgaggcccg gctcttcagg gcgtgaactc gact
//
LOCUS       DASPKR010000086         2705 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1433881, whole genome shotgun sequence.
ACCESSION   DASPKR010000086 DASPKR010000000
VERSION     DASPKR010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2705)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2705
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1433881"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..392
                     /locus_tag="VD968_02510"
     CDS             <1..392
                     /locus_tag="VD968_02510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13294.1"
                     /translation="DRNKKFRTKDDKGGITPPMLDRGFEEIDYLSYVSVPVVSNVGYR
                     EEMALGLINVDTKLFAADADDLEGAEETLEGDRTILTLKIKPDELETLAEKLYMHDDE
                     AVNYLEDMRCIVIPLLELYAKCRQGAP"
     gene            complement(396..1202)
                     /locus_tag="VD968_02515"
     CDS             complement(396..1202)
                     /locus_tag="VD968_02515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018286761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbbQ/NirQ/NorQ/GpvN family protein"
                     /protein_id="HYE13295.1"
                     /translation="MAERAIEEYTVTEEPFYLSVGREVELFEAAHAARLPVMLKGPTG
                     CGKTRFVEHMAWRLGRPLITVACHEDLSATDLVGRFLLEGDETVWHDGPLTAAVRNGA
                     ICYLDEVVEARKDTVVIIHPLTDDRRRLPIEKRGTILDAPPAFMLVVSYNPGYQSILK
                     DLKQSTRQRFVAMEFDYPPPELEAEIVAREGGVSPDEARDLVLIGQKVRNLRGHGLEE
                     GVSTRLLIYAAQLTARGIPPVAAAEVALCSPITDDRDLQRSIREIVTTVI"
     gene            1338..2456
                     /gene="mnmA"
                     /locus_tag="VD968_02520"
     CDS             1338..2456
                     /gene="mnmA"
                     /locus_tag="VD968_02520"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HYE13296.1"
                     /translation="MKIAVAMSGGVDSSAAAAILKAEGHELVGFTMQLWNQRRGLSVG
                     EDGEPLPSRCCSLDDVYDARRVAEDLGFPFYVLNLEREFERDVVAPFVQSYLEGETPI
                     PCVACNSRLKFASLDRMARSLGCEKVATGHYARVGHDPATGRHRLLRGTDSRKDQSYF
                     LWELTQDQLSRALFPLGGMTKGEAREAARSAGLSVAEKKESQEICFVPDGDYAGFIDR
                     YLEAEGRAGEAPSRGEIVDTSGRVIGEHTGVHRYTVGQRRRIGVTRELPLYVVRVEPE
                     RGRVVVGGAEELLSHEFTAAGVNWVAFDEPTGPVRADVRVRYRHEEAPAAITPLAGGR
                     ARVRFDEPQRAVTPGQATVFYRGEEVIGGGWIVKDRGQ"
BASE COUNT          468 a          877 c          914 g          446 t
ORIGIN      
        1 gggacaggaa caagaagttc cggacaaagg acgacaaggg ggggatcacc cctccgatgc
       61 tagaccgcgg cttcgaggag atagactacc tctcctacgt ctccgtgccc gtggtgagca
      121 acgtcggcta ccgcgaggag atggcgctcg gcctcatcaa cgttgacacg aagctcttcg
      181 ccgccgacgc cgacgacctc gagggcgccg aagagacgct cgaaggcgac cgcacaatac
      241 tgaccctgaa gattaagccg gacgaactgg aaacgctggc cgagaagctc tacatgcacg
      301 acgacgaggc cgtgaactac ctggaagaca tgaggtgtat cgtcataccg ctgctcgagc
      361 tctacgccaa gtgccggcag ggcgcgccct gacacttaaa tcacggtcgt gactatctcg
      421 cgtatgctgc gctggaggtc gcggtcgtcc gttatgggcg agcagagggc gacctcggcg
      481 gcggccacgg gcgggatgcc gcgcgccgtt agctgcgcgg cgtagatgag cagccgcgtc
      541 gagaccccct cctcaagccc gtggccccgc aagtttctaa ccttctgccc gatgagcacc
      601 aggtcgcgcg cctcgtcggg cgagacgccg ccctcgcgcg cgactatctc ggcctcgagc
      661 tccggcggcg ggtagtcgaa ctccatcgcg acgaagcgct ggcgcgttga ctgcttcagg
      721 tctttgagta tggactggta gccggggttg tagctgacga cgagcatgaa ggcgggcggc
      781 gcgtccagaa tcgtcccgcg cttctcgatg ggcaagcgcc ggcggtcgtc ggtcagcggg
      841 tggatgatga cgacggtgtc cttgcgcgcc tcgaccacct cgtccaagta gcagatcgcg
      901 ccgttgcgga cggccgccgt gagcgggccg tcgtgccaga cggtctcgtc gccttcgagc
      961 aggaagcggc cgaccaagtc cgtggccgag aggtcttcgt ggcacgcgac cgtgatgagc
     1021 ggccgcccca gccgccacgc catgtgctcg acgaagcgcg tcttgccgca gcccgtaggg
     1081 cctttgagca tgacgggcag gcgcgcggcg tgcgccgcct cgaacagctc cacctcgcgc
     1141 ccgaccgaaa ggtagaaggg ctcttccgtt accgtgtatt cctcaatcgc tctctcagcc
     1201 ataagaatct tcagggctgc gcgcgcgagt gcgccgcggg ctcgattcgg gtatcctaaa
     1261 cgaaggctcg gcggggcatc ttaacacccg gcgtgaacgg gcggcaaacg ggcgtttttc
     1321 gagggttttg acgggaaatg aagatagcgg tggcgatgag cggcggcgtt gactcttcgg
     1381 cggcggccgc gatcctgaag gccgagggcc acgagctcgt cggcttcacg atgcagctct
     1441 ggaaccagcg gcgcggcctc tccgtgggcg aggacggcga gccgctgccc tcgcgctgct
     1501 gctcgctcga cgacgtttac gacgcccgcc gagtggccga agatttgggc ttccccttct
     1561 acgttttaaa cctcgagcgc gagttcgagc gcgacgtggt cgcgcccttc gtccaaagct
     1621 acctcgaagg cgagacgccc atcccctgcg tcgcctgcaa cagccgactc aagttcgcct
     1681 cgctcgaccg catggcccga agccttggct gcgagaaggt cgctacgggc cactacgccc
     1741 gcgtcgggca cgacccggcc acgggccgcc accggctact cagggggacg gactcgagga
     1801 aggatcagag ctacttcctc tgggagttga cgcaggatca gctctcgcgg gcgctcttcc
     1861 cgctcggcgg gatgacgaag ggggaggcgc gagaggcggc gcgctccgcg ggcctgagcg
     1921 tcgccgagaa gaaggagtcg caggagatct gcttcgtccc cgacggcgac tacgccggct
     1981 ttatagaccg ctacctcgaa gccgaggggc gcgcgggcga ggcgccgagc cggggcgaga
     2041 tagttgacac ttcggggcgc gtgataggcg agcacacggg cgtccaccgc tacaccgtcg
     2101 ggcagcgccg ccggataggc gtcacgcgcg agctgccgct ctacgtagtg cgcgtcgagc
     2161 ccgaacgggg ccgcgtcgtc gtcggcggcg ccgaagagtt actctctcac gagttcacag
     2221 cggccggcgt caactgggtc gccttcgacg agccaacggg tcccgtccgc gcagacgtgc
     2281 gcgtccgcta ccgccacgag gaggccccgg ccgccatcac gccgctcgca gggggccgcg
     2341 cgcgcgtgcg ctttgacgag ccgcagcgcg ccgtcactcc gggccaggcc accgtcttct
     2401 accgcggcga agaggtcata ggcggcgggt ggatagttaa agacagaggg cagtaggcag
     2461 aaagcaatag gcagtaaaaa cgcacatccc gtctcgactg ccttctgcct gctgctttcc
     2521 gccttctaaa ctttccggcc ctgccgcgcg taataaagcc ggcgcgcctc ccgcctcccc
     2581 gggggctttt atttcaggaa gtgggtaaat tctctatggc aatgtcaacg acccgtaagg
     2641 tgcttttgat aataacgggg cttgtgctcg tgctggtcgt ggtcgtcggg ctcgtcgtgg
     2701 cgctc
//
LOCUS       DASPKR010000087         2403 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1304608, whole genome shotgun sequence.
ACCESSION   DASPKR010000087 DASPKR010000000
VERSION     DASPKR010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1304608"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..513
                     /gene="modA"
                     /locus_tag="VD968_02525"
     CDS             <1..513
                     /gene="modA"
                     /locus_tag="VD968_02525"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HYE13297.1"
                     /translation="VATVERLRAEGLLSEGTAATYARGRLVLWSPAGSGVRRVEDLAG
                     AGVKRVAVAKSDVAPYGRAAVEAMRALGVWAVVEPKVVYSQSVMQARQFAASGNAEAA
                     FLPRSLVKEGEGSFVEIEERLHAPVEQALAVVRASPRQREARQFAEFVLSEEGRGILK
                     AYGYAPPAGR"
     gene            complement(518..1528)
                     /locus_tag="VD968_02530"
     CDS             complement(518..1528)
                     /locus_tag="VD968_02530"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13298.1"
                     /translation="MDEMMTPDTPQGQPEPIPFPFNMRNYCPYEPIEKRIAGIRALVV
                     NCLLTDRSHLSQLALDEWGADADAKLARERQISRLALGNIESNIRRLVRAPDIREAHL
                     SEVSEKVEEFKPHAIIISGTLTDFDYYNPEMLRRFGDFVTKTRAPVLAICGSHQLIGI
                     CFGAHCVTLRNREPRDERAEAREFEYQYRFVRITDASDPIFEGIDDKGNRVWQDYTTE
                     GRILRVWQNHGLQLDHVPEGFKLLAAAYKCHNQMMVKRTEGQLIYTVQFHLEKSFQDL
                     TSSHERVDPNLKPGEKKRKLREQASNRSRWAHPNESRDGRILFENFLRLALDHSRKAG
                     NA"
     gene            complement(1564..2115)
                     /locus_tag="VD968_02535"
     CDS             complement(1564..2115)
                     /locus_tag="VD968_02535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13299.1"
                     /translation="MRSAAAGARTAGAERAGRPASVEALVAQLREGLGGEWPARVYRE
                     RVLPLRTRSHAVPAAASPAARVEVLHTLLGVELKVGRRRMSCPDLATARYLSVFARAG
                     VREAAVPYDITKVSRAADEMESAWQRMILMADRLTEGRAKSARARLRSAARREVRREI
                     EEAGAGAAVPQFRQETRQRPRRI"
     gene            complement(2208..>2403)
                     /locus_tag="VD968_02540"
     CDS             complement(2208..>2403)
                     /locus_tag="VD968_02540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13300.1"
                     /translation="YLRLIVVMFFRERTTQWHPPVVPASMALVLILTVAGVLFLGLFP
                     GSVIDAFRARQPDAAVTSLR"
BASE COUNT          340 a          787 c          857 g          419 t
ORIGIN      
        1 gtagccaccg tagagcggct gcgcgctgaa gggctgctgt ccgaaggcac ggcggcgaca
       61 tacgcgcgcg gccgcctcgt cctatggtcg ccggccggct cgggcgtgcg gcgcgtggag
      121 gacttggcgg gggcgggggt gaagagggtc gcggtggcta agtcggacgt ggcgccttac
      181 gggcgcgcgg ccgtcgaggc catgcgcgcg ctgggcgtct gggccgtggt cgagccgaag
      241 gtcgtctatt cgcagtcggt catgcaggca cgccagttcg ccgcgagcgg gaacgcggag
      301 gcggccttcc tcccgcgctc gctcgtgaaa gagggcgagg gcagcttcgt cgaaatcgag
      361 gagcgcctgc acgcccccgt tgagcaggcg ctcgcggtcg tgcgcgcctc gccgaggcag
      421 cgggaggcga ggcagttcgc cgagttcgtg ctgagtgaag aggggagggg aatcctcaag
      481 gcttacggct acgcgccgcc cgccgggcgg tagcggctca ggcgttgccg gccttgcgcg
      541 agtggtcgag ggcgaggcgc aggaagttct cgaagaggat gcggccgtcg cgcgactcgt
      601 tcgggtgcgc ccaccgcgag cggttgctgg cctgctcgcg gagcttccgc ttcttctcgc
      661 cgggcttgag gttcgggtca acgcgctcgt ggctgctcgt caagtcctgg aaggattttt
      721 ccaggtggaa ctggacggtg tagatgagct gaccctcggt tcgcttgacc atcatctggt
      781 tgtggcactt gtaggcggcc gcgagcagct tgaagccctc gggcacgtgg tcgagctgga
      841 ggccgtggtt ctgccacacg cgaagtatcc gaccctcggt cgtgtagtcc tgccagaccc
      901 tgttgccctt gtcgtctatc ccctcgaata tggggtcgga cgcgtcggtg atgcgcacga
      961 agcggtactg gtactcgaac tcgcgcgcct ctgcgcgctc gtcgcgcggc tcgcggttgc
     1021 ggagcgtgac gcagtgggcg ccgaagcaga ttcctatgag ctggtgcgag ccgcagatgg
     1081 cgaggacggg ggcgcgcgtc ttcgttacga agtcgccgaa gcggcgcagc atctccgggt
     1141 tgtagtagtc gaagtcggtg agcgtgccgc tgattatgat ggcgtgcggc ttgaactcct
     1201 cgaccttctc cgacacctct gacaggtgcg cctcgcgtat gtcaggggcg cggacgagcc
     1261 tccgtatgtt gctctcgatg ttgccgagcg cgagccggga tatttggcgc tcgcgcgcga
     1321 gcttcgcatc cgcgtcggcg ccccactcgt cgagggcgag ctgcgagagg tggctcctgt
     1381 cggtgagcag gcagttgacg acgagcgcgc gtatgccggc gatgcgcttc tctatcggct
     1441 cgtaggggca atagttccgc atgttgaagg ggaaaggtat cggctccggc tggccctgcg
     1501 gagtgtcggg cgtcatcatc tcgtccatag tctctgtgta aaacccctta atcgttcccc
     1561 ttattagatg cgccgggggc gctgtctggt ctcctgcctg aattgcggga ctgccgcgcc
     1621 cgcccccgcc tcttcgatct cccgcctgac ctcgcgccgc gcggccgagc gcagccgcgc
     1681 gcgggcgctt ttggcgcgcc cctcggtcaa tcggtcggcc atcaaaatca tgcgttgcca
     1741 ggcggactcc atctcgtcgg ccgcgcgcga gaccttcgtg atgtcgtagg ggactgccgc
     1801 ctcgcgcacg cccgcgcgcg cgaagaccga gaggtagcgc gccgtcgcca agtccgggca
     1861 ggacatccgt cgccgcccga ccttcagctc gacgccgagc agcgtgtgca gcacctcgac
     1921 ccgggccgcg ggcgacgcgg ccgccgggac tgcgtgcgag cgcgtgcgca gcggcaacac
     1981 cctctcgcga tagacgcgcg ccggccactc cccgccgagc ccctcgcgca actgcgcgac
     2041 cagcgcctcg acggaggcgg ggcgccctgc tctttcggcg cccgccgtcc tggccccggc
     2101 ggcggcactc ctcatcgccc tcccgtccac acttgacgaa gggcggggct gcgccggcta
     2161 aaagtcagcg ccagcctccc gcccgtggtt tcaattaacg tttagcttta ccggaggctc
     2221 gtcacggcag cgtcgggctg gcgcgcccgg aaggcgtcaa taacgcttcc ggggaacagc
     2281 ccgaggaaca gcacgcctgc cacggtcagt atcagcacga gcgccatgct cgcgggcacc
     2341 accggcgggt gccactgtgt cgtgcgctcc cggaagaaca tcacgactat cagccgcagg
     2401 taa
//
LOCUS       DASPKR010000088        10211 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_398779, whole genome shotgun sequence.
ACCESSION   DASPKR010000088 DASPKR010000000
VERSION     DASPKR010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10211)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10211
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398779"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1237
                     /locus_tag="VD968_02545"
     CDS             <1..1237
                     /locus_tag="VD968_02545"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HYE13301.1"
                     /translation="SSPVYSPDGRFLAYRSQATPMFESDRWRLMLYDRQSKTTKELLP
                     KLDTSVESITFTPDSRHIYFTAGERGRHPVFVASVADGSVKKIVEGFNDDVKVSQDGR
                     LLVFTRSTAATPVEIYTAPLTAPDAAGAAAALTRTNDELMRQYALRPAEEVTWAGAGG
                     AKISGWLVKPANFDPSKKYPLLVLIHGGPQGAWNDNWGYRWNPQVFAANGYVVFQPNP
                     RGSTGFGQQFTNEISGDWAGKVYEDIMNGVAMVADMPFVDRENVAAAGASYGGYMVNW
                     ILGHNDHPRVKFKTLVSHAGVFNTVSMYGVTEELWFAEWEFKGTPWDNPELYAKWSPH
                     LFVKNFKTPTLVTHGEIDYRVPVGEGLQLFTALQRQGVPSKLVVFPDEGHWILKPANS
                     QFWYTTVLDWLDSHLKRRA"
     gene            1387..2937
                     /locus_tag="VD968_02550"
     CDS             1387..2937
                     /locus_tag="VD968_02550"
                     /inference="COORDINATES: protein motif:HMM:NF005545.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYE13302.1"
                     /translation="MRDADKRVVIIGAGPAGLTAAYELGKAGVRAVVLEKDDVVGGLS
                     RTLRHKGFHFDIGGHRFFTKVGAVDDLWREVLPNGDFLRRRRLSRIYYDKKFFHYPLR
                     LGPTLSNLGLRNSALILASYLRARLFPLRREETFEQWVTNRFGRRFFRLFFKTYTEKV
                     WGIPCDEITAEWAAQRIKDLSLFTAIKNVFVKPRAGDSGSVIKTLVEEFDYPSRGPGM
                     MWERMAALVERGGGEILTGARVERLVCRGGRVEAVEVERAGERLRVEGTHFVSSMPAR
                     ELVGKLYPAAPAPVREAAHALNYRDFIVVMLVVGRAEVFPDNWLYIHEPEVRLGRVQN
                     YKNWSPEMVPDASKTCLGLEYFCFEGDGLWAMPDAELIELGKRELERLGLVCAAEVED
                     GTVVRVEKAYPVYDSTYRESLALMRDHLRGIDNLQLVGRNGMHRYNNQDHSMLTAMLA
                     VENILGADFDLWQVNAEGEYHEEVRRSAGPAAGELFGRLASTQPHVPTRVRAARPPVI
                     PVEQYDEP"
     gene            2927..3964
                     /locus_tag="VD968_02555"
     CDS             2927..3964
                     /locus_tag="VD968_02555"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE13303.1"
                     /translation="MNLEPPLISVVVPVHQGGPALARCLAALRASEFKDFEIVVADDA
                     STDGAAEGLGDDVKVVRLARRSGPAAARNAGARAARGPLLLFVDADVLVRPGTLSRVA
                     SDFERRPEIAALFGSYDDAPAEPDFVSQYKNLQHHFTHQRGREEAETFWAGCGAVRRE
                     AFEAAGGFDEARYTEPSVEDIELGYRLRRSGYPILLDKALQVKHLKRWTLRSLLRADI
                     FRRAVPWSRLILERRGMINDLNLRATERACACLVALSAAALALSALEPLLLAAAAALL
                     ASVAVLNREMYAFFLQRRGVRFAALAFALHALYYLYSGATFALLWLAHALKGRRAAAS
                     GLEHAQSKSRG"
     gene            3939..5678
                     /locus_tag="VD968_02560"
     CDS             3939..5678
                     /locus_tag="VD968_02560"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYE13304.1"
                     /translation="MPKAKAGAKRQGRKRAAAKAAPVPVAAGLSAADGGARTSRGEWI
                     FLGALVAAAFVFRLLMALRDHDVLWDGYYYGVLGKNLIRGNFSEGMSTYWSPLYPLLV
                     GVSSLFFSDLKFAASFVSVVAGTLTVAAVYFLIRDLYGRAEAGVGAALTAAYPQLVLY
                     SAVFLTEATYTLLFVCGMHAGWLALSRRGGRHFLLAGLAFGACYLVKPEAFAYAGLLT
                     FVAAASAFVARRLLTKETLLNVALVAVGFLVLAAPYVLYLRAQTGRWTLSEKTAMHLH
                     GAVNIYKLTPDGEGTLADRLWVGGRRGESAAGGRRGGSESFARPPAGGQTPSLAARLT
                     TNLPKESRTLLKVVPAPLLALALLGLAAPPWSRARAAREGYILLFLLSTLAGYAVTTS
                     VNEARLLTPLVPAFACWWARAVVIIEAWIARGYSALRGAGEPAARRRAALRAVLVAAL
                     CLALVPWSVSVLGRGARSGYGREGVGRWLAANSAGGPLMAAAPWPAFYSGGEHLFLPL
                     EPYPTVIEYARRKGVSFIVIEEDTTSPHMRFLFQPGGEERAAADLAPAYRYDYEGKPG
                     HRIVVYKLTAASP"
     gene            5728..7293
                     /locus_tag="VD968_02565"
     CDS             5728..7293
                     /locus_tag="VD968_02565"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYE13305.1"
                     /translation="MTALFALALAAGAFFRLEGLGRKVVWFDEAVTLTLVSGRTGAEV
                     RRALAAGEPGAEQLRELQRVKPGSRVGDVVSEVGRTDPQLPPLYFVAARLWAQTFADS
                     PAGVRAVSAVFGVLALPCFYWLCREMFGPGPSPAVATALLAVSPFHVAYAQEARPYSL
                     WALLTIVSSAALLYALRAQTAQAWALYAVSAAAGLYAHALFAAVVGAHALYIAAAELR
                     LSGARKFRPTKAALGFALSAALALAAFAPWALKIREAAATVEAKTAWAREEVGAGPML
                     KSWAHGLARVFLDLGGRSAAEASEPYGVVSPLTEAALWPLAALALFALYRVCRDAPRR
                     AWLLVLLLAACVFVPLAGADLALGGKRSTVGRYLFPTYLAAQAAVAHLLASRALVVGG
                     RRARAWGAALAVVVACGLASCAVMWREETWRNKGQLTGMRGVVRVVNASERPLVVTTF
                     AGMNAGNALALAHSLDSRARFRFIADAREPVPPPPTEVFYLGLTESARRRLAEAGRRL
                     EPAGPPELWRMVR"
     gene            7307..8377
                     /locus_tag="VD968_02570"
     CDS             7307..8377
                     /locus_tag="VD968_02570"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HYE13306.1"
                     /translation="MALRRLKVGVLGCGRVARLVHLPALARLPCVEVCAVADCDPEAR
                     EAAARHARGASAHASTGELLERSGADAVIICLPSALHAGATISALEAGKHVYLEKPIA
                     TSLEDGRSVVAAWRRSGMVGMVGFNFRLSRLYAAARRHIQAGALGEIIGARTVSANRG
                     ELPGWKRSRATGGGVLLDLGSHHFDLARFLFGREVARVSARTRSVASEADTASVQFEL
                     DGGLTVQSFFSSCAPAEDRFEVFGTAGRLSVDRHLSLISLEGAGDAAPTRARKAAALA
                     HSLARSPHGFSKTLRPAAEPSYREALACFVRAAREGGQARPDFADGFHSLASVLAAEE
                     SAAAGDGRWVAPARLDDEDTAG"
     gene            8358..9569
                     /locus_tag="VD968_02575"
     CDS             8358..9569
                     /locus_tag="VD968_02575"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYE13307.1"
                     /translation="MKILLVNDYGVPAGGAELSLMLLRDSLRARGHDTRVFASSARPF
                     ASAEGFADEECFGTVTRLRTLLQTANPSAARELRRVLREFRPDVVHVKLFLTQLSPLI
                     LPELRGVPSLYHAVWYRAVCPTGTKLLPGGAQCEARAGRVCYRAGCLPLRDYLPLSLQ
                     MKLWRRWAGVFRAVVANSEATRRRLVAEGIGPVEVIWNGVPARPPRPPLPPEPLIAFA
                     GRLVREKGADVLLRAFAQVSGRAPGARLLIAGEGPERARLEALAVELGVASRVEMTGR
                     LTREELERRFEPAWAQAVPSLFEEPFGVVAAEASMRGTALVASDTGGLAEIVREGETG
                     LLVPQGDAGALADALALLLCDRALAERMGAAGRAFALEHFGEETYADRFLAVYERLVR
                     GEAKGGEGLHV"
     gene            9562..>10211
                     /locus_tag="VD968_02580"
     CDS             9562..>10211
                     /locus_tag="VD968_02580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13308.1"
                     /translation="MSETPLVLLGVDGADHRLVLRWAAEGHLPTLASLMGRGCWATIG
                     GPEQVCEHGSSLSLLSGVSRSRHGYYFMRQLVPGTYDLRTFSYADADALPFWSRLAGT
                     GKRVAVIDAPDSRPVKGVEGIQLANWAVHEPATAPNAPCAEPPELLEEALAAFGPRIP
                     VLEFKPGATFEDDLEMYRRFLRRVRRKGEMCRRLLGRGEGFDLIAVGFFESHTAAHR"
BASE COUNT         1368 a         3644 c         3543 g         1656 t
ORIGIN      
        1 ctcctcgccc gtctattcgc cggacggccg cttcctcgcc taccgctcgc aagctacgcc
       61 catgttcgag agcgaccgct ggcgcctgat gctctacgac cggcagtcga agacgacgaa
      121 agagctgctg cccaagctgg ataccagcgt cgagagcata acgttcacgc ccgactcgcg
      181 gcacatatac ttcacggccg gcgagcgcgg ccgccacccc gtcttcgtcg cctcggtcgc
      241 cgacggctca gtgaagaaaa tcgtcgaggg cttcaacgac gacgtgaagg tctcacagga
      301 cggccgccta ctcgtcttca cgcgctcgac cgccgcgacc cccgtcgaga tttacacggc
      361 tccgctcacc gcccccgacg ccgcgggcgc ggccgccgcc ctaacgcgca cgaacgacga
      421 attgatgcgg cagtacgcgc tccgcccggc ggaggaagtg acctgggcgg gcgcgggcgg
      481 cgcgaagata tcgggctggc tggtcaagcc cgccaacttc gacccgtcga agaagtaccc
      541 gctcctcgtg ctcatacacg gcgggccgca gggcgcatgg aacgacaact ggggctaccg
      601 ctggaacccg caggtcttcg ccgccaacgg ctacgtcgtc ttccagccga acccgcgcgg
      661 ctcgacgggc ttcggccagc agttcaccaa cgagatttcc ggcgactggg ccggcaaggt
      721 ttacgaggac ataatgaacg gcgtggcgat ggtggccgac atgccgttcg ttgaccgcga
      781 gaatgtcgcg gcggcggggg cctcctacgg cggctacatg gtcaactgga tactgggcca
      841 caacgaccac ccgcgcgtga agttcaagac gctcgtctcg cacgcgggcg tcttcaacac
      901 cgtgagcatg tacggcgtga ccgaggagct ctggttcgcc gagtgggagt tcaaggggac
      961 gccgtgggac aacccggagc tttacgcgaa gtggtcgccg cacctcttcg tcaagaactt
     1021 caagacgccc acgctcgtca cgcacggcga gattgactac cgcgtccccg tgggcgaggg
     1081 ccttcaactc ttcacggcgt tgcagcggca gggcgtccca tccaagctcg tcgtcttccc
     1141 cgacgagggc cactggattc tgaagcccgc caactcgcag ttctggtaca ccaccgtcct
     1201 cgactggctg gactcgcacc tgaagcgcag ggcataaagc gcgctctcgc cagctaaggg
     1261 cgcgcgggcc ggcgccgggc cgcgcgccct tacttttcgc ctcgctgccc cggcttgcct
     1321 tccccgcgcg gtttcgttta ccttccacgt tgccctacgt ctagccgccg ccgagttttc
     1381 ttcccgatga gagacgccga caagagggtt gtgattatag gggccgggcc cgccggcctc
     1441 acggccgcat acgagttggg caaggccggc gtgcgcgccg tcgtcttaga gaaggacgac
     1501 gtggtgggcg ggctttcgcg cacgctccgg cacaagggct tccacttcga catcggcggc
     1561 caccgcttct tcacgaaggt cggcgccgtt gacgacctct ggcgcgaggt gctcccgaac
     1621 ggcgacttcc tccgccgccg ccgcctctcg cgcatctact acgacaaaaa attcttccac
     1681 taccccctgc ggctcggccc cacgctctcg aacctcggcc tccgcaactc cgcgctgata
     1741 ctcgccagct acctgcgcgc gcgcctcttc cccctccggc gcgaggagac tttcgagcag
     1801 tgggtgacga accgcttcgg ccgccgcttc ttccggctgt tctttaagac ctacaccgag
     1861 aaggtctggg gcataccctg cgacgagata acggccgagt gggccgcgca gcgcatcaaa
     1921 gacctctcgc tcttcacggc gataaagaac gtcttcgtca agccgcgcgc gggcgactcc
     1981 ggctcggtca tcaagacgct cgtagaggag ttcgactacc cttcgcgcgg ccccggcatg
     2041 atgtgggaga ggatggcggc gctcgtcgag cgcggcggcg gcgagattct cacgggcgcg
     2101 cgcgtcgagc gcctcgtgtg ccgcggcggg cgcgtcgagg cagtcgaggt cgagcgcgcc
     2161 ggcgagcgct tgcgcgtcga aggcactcac ttcgtgagca gcatgccggc gcgcgagctc
     2221 gtcgggaagc tttacccggc cgcccccgcg cccgtccgcg aagccgcgca cgcgctcaac
     2281 taccgcgact tcatcgtcgt catgctcgtc gtgggccgcg ccgaagtctt cccagacaac
     2341 tggctctaca tacacgaacc ggaggtcagg ctcggccgcg tacagaacta caagaactgg
     2401 agccccgaga tggtgccgga cgcgtcgaag acgtgcctcg ggctcgaata cttctgcttc
     2461 gagggcgacg gcctttgggc gatgccggac gcggagctta tcgagctcgg caagcgcgag
     2521 ctggaaaggc tcgggctcgt ctgcgcggcc gaggtcgagg acgggacggt cgtgcgcgtc
     2581 gagaaggcat accccgtcta tgactcgacc taccgcgagt cgctcgcgct gatgcgcgac
     2641 cacctgcgcg gcattgataa ccttcagctc gtcggccgca acggcatgca tcgctataac
     2701 aaccaggatc actcgatgct gacggccatg ctcgccgtcg agaacatact cggcgccgac
     2761 ttcgacctct ggcaggtgaa cgcggagggc gagtaccacg aagaggtcag gcggagcgcc
     2821 ggcccggccg cgggcgagct gttcgggcgc ctcgcctcca cgcagcctca cgtgcctacg
     2881 cgcgtgcgcg ccgcgcgccc gcccgtcatc cccgtcgagc agtacgatga accttgagcc
     2941 cccgctcatc tcagtcgtcg tccccgtcca ccagggcggc cccgccctcg cgcgctgcct
     3001 cgcggccctg cgcgcctccg agttcaaaga cttcgagatc gtcgtcgccg acgacgcctc
     3061 gacggacggc gcggcggaag ggctgggcga cgacgttaag gtcgtgaggc tcgcgcgccg
     3121 ctccggcccc gcggcggcgc gcaacgcggg cgcccgcgcc gcgcgcggcc ccttgctcct
     3181 cttcgtggac gccgacgtgc tcgtgcgccc cggaacgctc tcgcgcgtcg cttcggattt
     3241 cgagaggcgg cccgagattg ccgcgctctt cggctcctac gacgacgcgc cagccgagcc
     3301 cgacttcgtc tcgcagtaca agaacctgca acaccacttc acgcatcagc gcgggcgcga
     3361 ggaggcggag accttctggg ccggctgcgg cgccgtgcgc cgcgaagcct tcgaggcggc
     3421 gggcggcttc gacgaggcgc gatacaccga gccttccgtc gaggacatag agctcggcta
     3481 caggctgcgc cgctcgggct accctatcct cctcgacaaa gcgcttcagg tgaagcacct
     3541 taagcgctgg actttgcgct cgctcctgcg cgcggatatt ttcaggcggg ccgtgccgtg
     3601 gtcgaggctg atactcgaaa ggcgcgggat gattaacgac ctgaacctgc gcgcgacgga
     3661 gcgtgcgtgc gcgtgcctcg tcgcgctctc agccgcggcg ctcgccctct ccgcgctcga
     3721 gcctctgctc cttgcggccg cggcggcgct gctcgcctcg gtcgccgtcc tcaaccgcga
     3781 gatgtacgcc ttcttcctgc aacgcagggg cgtgcggttc gcggccttgg ccttcgcgct
     3841 tcacgcgctc tactaccttt acagcggcgc gaccttcgcg ctcctgtggc tcgcgcacgc
     3901 gctcaagggg aggcgcgccg ccgcgtcggg cctcgaacat gcccaaagca aaagccgggg
     3961 ctaagagaca ggggcggaag cgcgccgcgg cgaaggctgc gccagttccc gtcgccgccg
     4021 ggctgtcggc cgccgacgga ggcgcgcgca cgtcgcgcgg tgagtggatt tttctgggcg
     4081 cgctcgtcgc ggcggcgttc gtgttccggc tgctcatggc gctgcgcgac cacgacgttc
     4141 tttgggacgg ctactactac ggcgtgctcg ggaagaacct tatccgcggg aacttctccg
     4201 aggggatgag cacgtactgg tcgccgctct acccgctgct ggtcggcgtc tcgtcgctct
     4261 tcttctcaga cctgaagttc gcggcgagct tcgtttcggt cgtcgcgggg acgctcaccg
     4321 tcgcggcggt ctatttcttg atacgcgacc tctacggccg cgccgaggcg ggcgtgggag
     4381 ccgcgctcac ggccgcgtac ccgcagctcg tgctctactc ggccgtcttc ctgacggagg
     4441 cgacctacac gctgctcttc gtctgcggta tgcacgccgg gtggctcgcg ctctcgcgcc
     4501 gcggcggccg ccacttcctg ctcgccggcc tcgccttcgg cgcttgctac ctagtcaagc
     4561 cggaggcgtt cgcttacgcg ggcctgttga ccttcgtcgc ggcggcctcg gccttcgtcg
     4621 cccggaggct gttgacgaag gagacgcttc taaacgtcgc gctcgtcgcc gtcggctttc
     4681 tcgtgctcgc cgccccctac gtcctttacc tgcgcgcgca gaccggccgc tggacgctca
     4741 gcgagaagac ggccatgcac ctgcacggcg ccgtcaacat ctacaagctg acgcccgacg
     4801 gcgaaggcac gctcgccgac cgcctgtggg tcggggggcg ccgcggcgag tcggcggccg
     4861 gagggcggcg cgggggctct gagtctttcg cgaggccccc agccggcggg cagacgccct
     4921 cgctcgcggc gaggctcact acgaatctgc cgaaggagtc gcggacgctc ttgaaggtcg
     4981 tgccggcgcc gctgctcgcg ctcgcgctac tggggctagc ggccccgccg tggtcgcgcg
     5041 cgcgcgcggc gcgcgaaggg tacatcctgc tcttcctgct ctcgacgctc gcaggctacg
     5101 ccgtaacgac ttccgttaac gaagcccgac tgctcacgcc cctcgtcccc gccttcgcct
     5161 gctggtgggc gcgcgccgtc gtgattatcg aagcgtggat tgcgcgcggg tactcggccc
     5221 tccgcggcgc gggcgagccg gcggcccggc ggcgagcggc gctgcgggcc gtgctcgtcg
     5281 ccgcgctgtg ccttgcgctc gtgccgtggt ctgtgagtgt gctagggcgc ggggcgcgct
     5341 ccggctacgg gcgcgagggg gtggggcgct ggctcgccgc gaactcggcg ggcggcccgc
     5401 tcatggccgc cgcgccgtgg cccgccttct actccggcgg cgagcacctc ttcctcccgc
     5461 tggagcccta cccgacggtg atagagtacg cgcggcgcaa gggcgtgagc ttcatcgtca
     5521 tagaggagga cacgacgagc ccgcacatgc gattcctctt ccagccgggc ggcgaagagc
     5581 gcgcggcggc cgacctcgcg cccgcgtacc gctacgacta cgagggcaag cccggccacc
     5641 gcatcgtcgt ctataaactg actgccgcga gcccctgaag tttgccgccg gcgcccgctg
     5701 accgccttga acaagcgcac gacaatcttg accgccctat tcgcgctggc gctcgcggcc
     5761 ggggcgttct tccgcctcga agggctcggc aggaaggtcg tctggttcga cgaggccgtg
     5821 acgctcacgc tcgtctcggg ccggacgggc gcggaggtga ggcgcgcgct cgcggcgggc
     5881 gagccgggcg ccgaacagtt gcgcgagctt cagcgcgtaa agccgggtag ccgcgtgggc
     5941 gatgtcgtgt ccgaggtcgg gcgcacagac ccgcagctcc cgccgctcta cttcgtggcg
     6001 gccaggctct gggctcagac gttcgcagac tcgcccgcgg gcgtgcgcgc ggtctcggcc
     6061 gtcttcggcg tgctggcgct gccgtgcttc tactggctct gccgcgagat gttcgggccg
     6121 gggccgtcgc ccgccgtcgc aacggcgctc ctcgccgtct ccccgttcca cgtcgcttac
     6181 gcgcaggagg cgaggccgta cagcctctgg gctctgctca cgattgtttc gagcgcggcg
     6241 ctgctctacg cgctgcgagc ccagaccgcg caggcttggg cgctctacgc cgtgtctgcc
     6301 gcggcgggcc tctacgctca cgcgctcttc gccgccgtgg tgggcgcgca cgcgctctac
     6361 atcgcggccg ccgagttgag gctttcgggc gcgcgaaagt tcaggccgac gaaggcggcg
     6421 ctcgggttcg ccctctcggc cgccctggcg ctcgccgcct tcgcgccgtg ggccttgaag
     6481 attcgcgagg ccgcagcgac ggtcgaggcc aagaccgcat gggcgcggga agaggtgggc
     6541 gccggcccga tgctcaagag ttgggcgcat gggctcgcgc gcgtcttcct cgacttgggc
     6601 gggcggagcg ccgcggaggc cagcgagccc tacggcgtcg tgagcccgtt gacggaagcg
     6661 gcgctgtggc ccttagcggc gctcgcgctc ttcgcgctct accgcgtgtg ccgcgacgcc
     6721 ccgcgccgcg cctggctgct cgtcctgctc ctcgccgcgt gcgtcttcgt gccgctcgcg
     6781 ggcgcagacc tcgcgttggg cgggaagagg tcaacggtcg ggcgatacct cttccccacg
     6841 tatctcgcgg cgcaggcggc cgtggcgcac ctgctcgcct cgcgcgcgct cgtagttggc
     6901 gggcggcgcg cgcgggcgtg gggcgcggcg ctcgcagtcg tcgtcgcctg cgggctagcc
     6961 tcgtgcgccg ttatgtggcg cgaggagaca tggcgcaaca aggggcagtt gaccggcatg
     7021 cgcggcgtcg tgcgcgtcgt caacgcctcg gagcgcccgc tcgtcgtcac gaccttcgcg
     7081 gggatgaacg ccggcaacgc gctcgcgctc gcccacagcc tcgactcgcg cgcgcgcttc
     7141 cgcttcatcg ccgacgcccg cgagcccgtg cctccgccgc cgactgaagt cttctacctc
     7201 ggcctcacgg agtctgcgcg gcgcaggctc gcggaggcgg ggcgcaggct cgagcccgcc
     7261 ggcccgcccg agctctggcg gatggtaaga tgaaagggag acgcgggtgg ctttgaggcg
     7321 cttgaaggtc ggcgtactgg gctgcgggcg cgtcgcgcgg ctggtgcacc tgcctgcgct
     7381 cgcgcgactt ccgtgcgtgg aggtgtgcgc cgtcgccgac tgcgaccccg aggcgcgcga
     7441 ggccgcggcg cgccacgcga gaggcgcgag cgctcacgcc tcgacgggcg aactgctgga
     7501 acgttccggc gccgacgccg tcatcatctg cctgccgagc gcgctgcacg ccggggcgac
     7561 aatctcggcg ctcgaagccg gaaagcacgt ctatctcgag aagccgatag caacttcgct
     7621 cgaagacggc cgctcggtcg tcgccgcgtg gcgccgcagc ggcatggtcg gcatggtcgg
     7681 cttcaacttc cgcctgagcc gcctctacgc ggcggcgcgc aggcacattc aggcgggcgc
     7741 gctcggcgag ataatcggcg cgcgcacggt ctctgctaac cggggtgagc tgcccgggtg
     7801 gaagaggtcg cgcgcgaccg gcggcggcgt gctcttagac ctcggctcgc accacttcga
     7861 tttggcgcgc ttccttttcg ggcgcgaggt cgcgcgggtg agcgcccgca cgcgctccgt
     7921 cgcgagcgag gccgacacgg cgtccgtgca gttcgagttg gatggcgggc tcacggttca
     7981 gtccttcttc tcctcgtgcg cgcccgcgga ggatcgcttc gaggtcttcg gcaccgcggg
     8041 gcggctgtcg gttgaccgcc acctctcgct catctctttg gagggcgccg gggatgccgc
     8101 gccgacgcgg gcgcggaagg ccgccgcgct cgctcactcg ctcgcgcgga gcccgcacgg
     8161 cttctcgaag acgctgcggc ccgcggccga gccttcctac cgcgaggcgc tcgcctgttt
     8221 cgtgcgcgcc gcgcgcgagg gcgggcaggc tcggccggat ttcgcggacg ggtttcacag
     8281 cctcgcctcg gtgctagcgg ccgaagagtc cgccgcggcg ggcgacggga ggtgggtcgc
     8341 gcccgcgcgg ctcgacgatg aagatactgc tggttaacga ctacggcgtg ccggccggcg
     8401 gcgccgagct ttcgctcatg ctgctgcgcg actctttgcg cgcccgcggc cacgacaccc
     8461 gcgtcttcgc gagcagcgcc cgcccgttcg cctcggccga gggcttcgcc gacgaggagt
     8521 gcttcggcac agtcacgcgc ctgcgcacgc tccttcagac ggcgaacccc tcggcggcgc
     8581 gagagctgcg ccgcgtgcta agggagtttc ggcccgacgt ggttcacgtc aagctcttcc
     8641 tgacgcagct ctcgccgctc atactgcccg agctgcgcgg cgtgccgtcg ctctaccacg
     8701 ccgtctggta tcgcgccgtc tgcccgacgg ggacgaagct actgccgggc ggcgcgcagt
     8761 gcgaggcgcg cgcggggcgg gtctgctacc gtgccgggtg cctgccgctg cgcgactacc
     8821 tgcctctaag cttgcagatg aagctctggc ggcgctgggc cggggtcttc cgcgcggtcg
     8881 tcgcgaacag cgaggcgacc cggcgccgcc tcgtcgccga aggcataggg cctgtcgagg
     8941 tcatctggaa cggcgtcccc gcgcggccgc cgcgcccgcc gctcccgccc gagccgctga
     9001 tagccttcgc cggccggctc gtgcgcgaaa agggggcgga cgttctgctg cgcgccttcg
     9061 cgcaagtctc ggggcgcgcg cccggagcgc ggctgctcat cgcgggcgaa ggcccggagc
     9121 gcgcgcggct cgaagcgctc gccgtcgagt tgggagtcgc gtcgcgcgtc gagatgacgg
     9181 gacgcctcac gcgcgaggag ttggagcggc gcttcgagcc cgcgtgggcg caggccgtgc
     9241 cgtcgctgtt cgaggagccc ttcggcgtcg tggccgcgga agcctcgatg cgcgggacgg
     9301 ccctcgtggc gagcgacacg ggaggcttag ccgagatagt tcgggaaggc gagacgggac
     9361 tgctagtgcc gcagggagac gcgggcgctc tcgccgacgc gctcgcgctc ctgctctgcg
     9421 accgcgctct ggccgaacgg atgggcgcgg ccgggcgtgc ctttgccctc gaacatttcg
     9481 gggaggagac ttacgcggac agattcctcg cggtctatga gaggctcgtg cgcggggagg
     9541 cgaagggggg cgaagggctt catgtctgag acgcctctgg tcttgctggg agtggacggc
     9601 gccgaccaca ggctcgtgct ccgttgggcg gcagaaggcc acctgcccac gctcgcgtct
     9661 cttatggggc gcgggtgctg ggcgacaatc ggcggccccg aacaggtctg cgagcacggc
     9721 tcgagccttt cgctcctgag cggcgtctct cgctcgcgcc acggctacta tttcatgcgg
     9781 caactcgtcc ccggcacata cgacctgcgc accttctcct acgctgacgc tgacgccctc
     9841 cccttctggt cgcgcctcgc tgggacgggc aagcgggtcg ccgtcataga cgcgcccgac
     9901 agccgccccg ttaaaggcgt cgagggaata cagctcgcca actgggccgt gcacgagccg
     9961 gcgaccgcgc cgaacgcgcc gtgcgccgag ccgcccgagc ttctcgaaga ggcgctcgcc
    10021 gccttcggcc cgcgcatacc cgtcctggag ttcaagccgg gcgcgacctt cgaagatgac
    10081 ctggagatgt accgccgctt tctgcgccgc gtccgccgca agggcgagat gtgccggcgg
    10141 ctcttggggc gcggcgaggg cttcgacctc atcgccgtcg gcttcttcga gtcgcacacg
    10201 gcggcgcacc g
//
LOCUS       DASPKR010000089         8006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_9926, whole genome shotgun sequence.
ACCESSION   DASPKR010000089 DASPKR010000000
VERSION     DASPKR010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8006)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8006
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9926"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..716)
                     /locus_tag="VD968_02585"
     CDS             complement(<1..716)
                     /locus_tag="VD968_02585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13309.1"
                     /translation="MHGKAFVLAFALAAAHALMCAAPAEGSGGGARPQRRASSARRAA
                     PSKVAQEEVVRFPRLGEVRVRAVEARGRQPRVEFASAATGRLLFSATLGSSDPESFRP
                     TLSPGVSPIEPFVRFMSVSADGLPSPMVAAVAVRPGGSDHGFETTLIGEVAGRLKVLT
                     PEPGWTPIQGGVFVGDLGGGRGPGMAVWEFIWADDEAHYDRHRYAARLYKFDRRRAVF
                     RRFDALRSKEKHESGEAALEG"
     gene            complement(730..1407)
                     /locus_tag="VD968_02590"
     CDS             complement(730..1407)
                     /locus_tag="VD968_02590"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HYE13310.1"
                     /translation="MQYNTNAPAPARRAFAFVAAAAYVAVLAVSAAAQSASPSASASA
                     GAPQPAPTARGSATVTLTATAAAPKVGDPAPDFKLPYATQEKIFFRPDERMTLSSLRG
                     KNVILAFYPADWSGGCTTEVCTFRDTFADLAKLNATILGISGDYVFSHHEWAKHHKLQ
                     FPLLSDHDHAVAKAYASYNEQYGLNNRTVFLIDKDGVVRYVNLAFKAGDKKDYDTLRA
                     ELEKLAK"
     gene            complement(1425..2069)
                     /locus_tag="VD968_02595"
     CDS             complement(1425..2069)
                     /locus_tag="VD968_02595"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: protein motif:HMM:NF015146.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HYE13311.1"
                     /translation="MAASPAGKSLEVRRAEFAALVAEAARCRRCEAMCGRRAVLSELN
                     GRVGARVMFVGEAPGRQGGDRTRVPFSGDQSGRNFTRYLASIALPREDIFITNSALCN
                     PRTESGANRKPTRSEVENCSEFLRRQIETVGAPVVVTLGAVSLAALRAVEYHQLSLKE
                     NVGQVHEWHGRLLVPLYHPSPQVLASHRREAQQLEDYKAVARALRRAERRHAAS"
     gene            complement(2073..3041)
                     /locus_tag="VD968_02600"
     CDS             complement(2073..3041)
                     /locus_tag="VD968_02600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13312.1"
                     /translation="MKLSRIAPLVCALALAGCSSDMNANNASKASATPASTATPAAQS
                     LSQTERPQKIKDQMSQRGEQDAAAPTLRVIEPAEGASISGSTVRVRLSLSGDLKGYKP
                     HKDPATQMGNHIHIILDNQPYEAYYELDQPFELRNVSEGRHTLRVFPSRPWHESYKND
                     GAFQMVTFEVKGGGDPSKPTTTNSGQKVADAANSNAAASNANTSPTPEGKDMQASTAG
                     AVDRAKPLLTYSRPKGEYKGADADAIMIDFWLSNAKLRGDGGEYRVRYSVDGGEAKFI
                     EKWEPVWLSGWAAGKHTVKLELVDASGNVVENGGYNSTSRDITVVR"
     gene            complement(3144..3797)
                     /locus_tag="VD968_02605"
     CDS             complement(3144..3797)
                     /locus_tag="VD968_02605"
                     /inference="COORDINATES: protein motif:HMM:NF014796.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-Mn family superoxide dismutase"
                     /protein_id="HYE13313.1"
                     /translation="MTDVKVYKPKQFDLSGLNGISDRTLEMHFKLYEGYVTNTNTLTA
                     KIAEYLADGKVDQEEMPAYSELTRRMGFEYNGMVLHEWYFGNMKKGSTTTDPEPNSNF
                     RRLAEQSFGSYDTWKADFVSVGKMRGVGWAICYQDPVNQTLSNHWITLHEVGNVAGFV
                     PVLVMDVWEHAFLLDYKPADRPKYIEAFFSNIDWQACDQRLRQGVSSRPAAAGEAGQ"
     gene            complement(3922..4701)
                     /locus_tag="VD968_02610"
     CDS             complement(3922..4701)
                     /locus_tag="VD968_02610"
                     /inference="COORDINATES: protein motif:HMM:NF017945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate hydroxylase PuuD"
                     /protein_id="HYE13314.1"
                     /translation="MFETTLNIPVGLAAFQDIFHAPSGDELMRIIFRWLHFVAGITWI
                     GMLYFFNLVNVDFMKALDAPTKKVVVPNLMPKALWYFRWGALVTVLAGISYYAMYIIR
                     PDVVNNRAAGGEASIALVFLGWLAISVLFWAIYFFLLPRLTKDGRVLGAVTAVLVILM
                     SVLIVWCLNEQLTHRTFTASNKTLSIGIGGALGIIMLFNVWGIIWPAQKRIIAGTVSG
                     EAAPPELARRAFLASRTNAWLSLPMLFFMATSHGDYIILGR"
     gene            complement(4873..7026)
                     /locus_tag="VD968_02615"
     CDS             complement(4873..7026)
                     /locus_tag="VD968_02615"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HYE13315.1"
                     /translation="MKRLFNRTLLSLAALALLGLSTASAQQPGRARRGAQRPAPQAKP
                     SPTPSPAPTPAAPAIAETPLQPGQRARFDVTHYRLDVELVPGQHQLNATGEVTFTPLD
                     NTRTVVLELNGSLKIESIERNGRQLTNFVQDQAGLDTIGPHVRIDLGEVVAAGQPQTL
                     RMRWTGALVTPEGGPLATKRLAYVGPDMSYLMYAARWFPFHEYAADRATSEITITVPA
                     GYEVAGASDEPVAAQAKAGKSAFRFVQRQPTLVGNFAVGRYITRALRINGYEIAFYVL
                     PGSEGFIEPYAQLVGEALQFYTQKYGQPAFGTRLSVVQIDDASLDAYAGQGIAFLSPR
                     FFTAGRQATLDERLLREVAYQWWGLTVGLKSFDDAWLSQGLAEWSSYAFREQRLQGAA
                     LETAQRDMLERALMFEQSASISRAPSTLDDQSAAYQAVVFYKGAMVFRMLRDVMGPQK
                     FDELLRRYASEFRGRNASIDDFERLANAVAGESMRHFFARWVEGTGVPEFASDYQIIR
                     TRGGKFRARGTVRQNMESLRLPVEVQLRAEGDDAVTTLFIADKSEDFDFESKGKPIEI
                     IVDPHNRLLRTSEELRVSVVARRGLELFREGQYIEAQRQLEEALKMDKSNSWVYYNLG
                     LIYLEQRNYDPAIDNFKAALDGNLRPAWIEAWAHIKMGNAYDAKGDRARAVNEYKKAV
                     ESEIEFDNAQKVAKQFLETPYDPKALAQQAQSGAK"
     gene            7225..7647
                     /locus_tag="VD968_02620"
     CDS             7225..7647
                     /locus_tag="VD968_02620"
                     /inference="COORDINATES: protein motif:HMM:NF015048.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog domain-containing protein"
                     /protein_id="HYE13316.1"
                     /translation="MSSNGDPAIRITLLPRDTNPQGTIFGGIILSYIDIAGAVEAHRR
                     TGLERFVTVAMREVVFHEPVFVGDLVSFYAETRRIGTTSITIGVVVEAERYGGTSERI
                     KVTEAEVIYVAVDANRRKMRIPENAKENLENVELHETS"
     gene            7766..>8006
                     /locus_tag="VD968_02625"
     CDS             7766..>8006
                     /locus_tag="VD968_02625"
                     /inference="COORDINATES: protein motif:HMM:NF012455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HYE13317.1"
                     /translation="MSLARRVTAEAVGTGMLLAAVVGSGIMGERLSGGNVAVALLANT
                     VATGAALIALILAFGQISGAHFNPAVTLADASQGGL"
BASE COUNT         1256 a         2547 c         2801 g         1402 t
ORIGIN      
        1 ccttcgagcg cggcctcgcc gctctcgtgc ttctccttcg agcggagcgc gtcgaagcgg
       61 cggaacacgg cgcggcggcg gtcgaacttg tagaggcggg cggcgtagcg gtgacggtcg
      121 tagtgcgcct cgtcgtccgc ccagatgaac tcccagacgg ccatccccgg cccacgccct
      181 ccgccgaggt cgccgacgaa gacgccgccc tgaatcggcg tccagcccgg ctcgggcgtg
      241 agcaccttaa gccgccccgc gacctcccct atcagagtcg tctcgaagcc gtggtcggag
      301 ccgccgggcc tgaccgccac cgcggcgacc atcggcgacg gcagcccgtc ggcgctcacg
      361 ctcatgaagc ggacgaacgg ctcgatgggc gagacgccgg ggctcaaagt cggcctgaag
      421 gattcggggt ctgaggagcc gagtgtcgcc gagaagagca gtcggcccgt tgctgcggag
      481 gcgaactcga cgcgcggctg ccgcccccgc gcctcgacgg cgcgcacccg cacctcgccc
      541 agacggggaa agcgcaccac ctcctcttgc gccaccttcg acggcgccgc gcggcgcgcc
      601 gacgaggcgc ggcgttgtgg ccgcgcgccc ccaccgcttc cctccgcggg ggcggcgcac
      661 atgagtgcgt gcgccgccgc gagcgcgaag gcgaggacaa aagctttgcc gtgcatgttc
      721 agcgggggtt tacttggcga gcttttccag ctcggcgcgg agcgtgtcgt agtccttctt
      781 gtcgccggcc ttgaaggcga ggttgacgta gcgcacgacg ccgtccttgt ctatgaggaa
      841 gaccgtgcgg ttgttgaggc cgtactgctc gttatagctg gcgtaggctt tggcgaccgc
      901 gtggtcgtgg tcggagagga gcgggaactg tagcttgtgg tgcttcgccc actcgtggtg
      961 cgagaagacg tagtcgccgc tgatacccag tatggtcgcg ttgagcttgg cgaggtctgc
     1021 gaaggtgtcg cggaaggtgc agacctccgt agtgcagccg ccagaccagt cggccgggta
     1081 gaaggcgagt atgacgtttt tgccgcgtaa agaggagagc gtcatacgct cgtcggggcg
     1141 gaagaagatt ttctcctgcg tcgcgtaggg gagcttgaag tcgggcgcgg ggtctccgac
     1201 cttcggcgcc gcggccgtcg cggtcagcgt gacggtcgca gagccgcgcg ccgtgggagc
     1261 gggctgcggg gctccggccg aggccgaggc gctgggcgaa gcggactgcg cggcggccga
     1321 gacggcgagc acggccacgt aagcggccgc ggcgacgaac gcgaaggcgc ggcgcgcggg
     1381 cgcgggggcg tttgtgttgt actgcatcac ttttttgaac ctcttcagct tgcggcgtgt
     1441 cggcgctcgg cgcggcgtag ggcgcgcgcg accgccttgt agtcttcgag ctgctgcgcc
     1501 tcgcgccggt gcgaggcgag cacctgcggg ctcgggtggt agagcgggac tagcaggcgc
     1561 ccgtgccact cgtgaacctg cccgacgttc tccttgagag agagttgatg atactcgacg
     1621 gccctgaggg cggcaagcga gacggccccg agcgtgacga cgacgggggc gcccacggtc
     1681 tcgatctgcc ggcgaaggaa ctcggagcag ttctcgacct ccgagcgcgt cggcttgcgg
     1741 ttagcgcccg actccgtgcg cgggttgcag agcgccgagt tggttatgaa gatgtcctcg
     1801 cgcgggaggg cgatggaggc taggtagcgc gtgaagttgc ggcccgactg gtcgccggag
     1861 aaggggacgc gcgtgcggtc gccgccctgc cggcccggcg cctcgcccac gaacatcacg
     1921 cgcgcgccca cgcgcccgtt gagctcgctc aaaaccgcgc gcctgccgca catcgcctcg
     1981 cacctgcggc agcgggcggc ttcggccacg agcgccgcga actccgcgcg cctcacctct
     2041 aaactcttcc cggcggggct cgcggccacg gctcacctga cgacggtgat gtcgcgcgag
     2101 gtcgagttgt agccgccgtt ctcgacgacg ttgccagagg cgtcaaccag ctccagcttg
     2161 accgtgtgct tgccggccgc ccagcccgag agccagacgg gctcccactt ctctatgaac
     2221 ttcgcctcgc cgccgtccac cgagtagcgc acgcggtatt cgccgccgtc gcccctgagc
     2281 ttcgcgttcg agagccagaa gtcaatcatg atggcgtcgg cgtccgcgcc cttgtactcg
     2341 cccttcgggc ggctgtaggt gaggagcggc ttcgcgcggt caaccgcgcc ggccgtgctc
     2401 gcctgcatgt ccttgccctc gggcgtgggc gacgtgttgg cgttgctcgc cgcggcgttc
     2461 gagttcgcgg cgtcggccac cttctgcccc gaattggtcg tcgtcggctt cgacgggtcg
     2521 ccgccgccct tcacctcgaa ggtgaccatc tggaaggcgc cgtcgttctt gtaactctcg
     2581 tgccacgggc gcgacgggaa gacgcgcagc gtgtggcggc cctcggagac gttgcgcagc
     2641 tcgaagggct ggtccagctc gtagtaagcc tcgtagggct ggttgtcgag tatgatgtgt
     2701 atgtggttgc ccatttgcgt cgcagggtct ttgtgcggct tgtagccctt gaggtcgccg
     2761 gagaggctga ggcgcacgcg cacggtcgag cccgaaatgg acgcgccctc ggccggctcg
     2821 attaccctga gcgtcggcgc ggccgcgtcc tgctcgccgc gctgcgacat ctggtcttta
     2881 atcttctgcg ggcgctcggt ctgcgagagc gactgcgccg cgggcgtggc ggtagaggcg
     2941 ggcgtcgccg acgccttcga ggcgttgttc gcgttcatat ccgaagagca gcccgcgagc
     3001 gccagcgcgc acacgagcgg cgcgatacga gagagtttca tgccgtcctc cgaaaaagtg
     3061 cttttgaaat caggttcacc acaaaggcac gaataagaat tgtctccttg cgccttcgcg
     3121 ataagaacag ctgttggccc gaactactgg ccggcttcgc ccgccgcggc ggggcgcgac
     3181 gagacgccct ggcgaaggcg ctggtcgcac gcctgccagt ctatgttcga gaagaaggcc
     3241 tcgatgtact tgggccggtc ggccggcttg tagtcgagca ggaaggcgtg ctcccacacg
     3301 tccatcacca gcacggggac gaagcccgcg acgttgccga cctcgtgcag cgttatccag
     3361 tggttcgaga gcgtctggtt gacggggtcc tgatagcaga tggcccagcc cacgccgcgc
     3421 atcttgccga cggagacgaa gtcggccttc caggtgtcgt agctcccgaa ggactgctcg
     3481 gcgaggcggc ggaagttcga gttcggctcc gggtctgtcg tcgtcgagcc cttcttcatg
     3541 ttgccgaagt accactcgtg cagaaccatg ccgttgtact cgaagcccat cctgcgcgtg
     3601 agctccgagt aggcgggcat ctcctcctgg tcaaccttgc cgtcggctag gtactcggcg
     3661 atcttcgcgg tgagcgtgtt ggtgttcgtg acgtagccct cgtagagctt gaagtgcatc
     3721 tccagcgtcc ggtctgagat gccgttcagg cccgagaggt cgaactgctt gggcttatag
     3781 accttcacgt ccgtcataaa gcgttcctcc ctgttattaa tgccgcgctt tgaagtcgtg
     3841 ccggcattat aacaggcaaa aagcccggcc gtcagggagg gcgccctccc tgacggccgg
     3901 gctcccgccc gtcggccctt cttaccggcc gaggatgatg tagtcgccgt gcgaagtcgc
     3961 catgaagaag agcatgggga gcgagagcca tgcgttagtg cgcgaggcga ggaaggcgcg
     4021 gcgcgccagc tcgggcggcg cggcctcgcc cgagaccgtg ccggcgatga tgcgcttctg
     4081 cgccggccag atgatgcccc agacgttgaa gagcatgatg atgcccagag cgccgccgat
     4141 gcctatggag agcgtcttgt tgctcgccgt gaaggtgcgg tgcgtgagct gctcgttcag
     4201 gcaccagacg atgaggacgg acatcagtat gacgagcacg gccgtcacgg ccccgagcac
     4261 gcgcccgtcc ttggtcagcc tcggcagcag gaagaagtag atggcccaga agaggacgga
     4321 gattgcgagc cagcccagga agacgagggc gatgctggcc tcgccgcccg cggcgcggtt
     4381 gttcacaacg tcgggccgga tgatgtacat cgcgtagtag gagatgcccg cgagcacggt
     4441 gacgagcgcg ccccaccgga agtaccagag cgccttcggc atcaggttgg ggacgacgac
     4501 cttcttcgtc ggcgcgtcga gcgccttcat gaagtccacg ttgacaaggt tgaagaagta
     4561 gagcatgcct atccaggtta tccccgcgac gaagtgcagc cagcggaaga tgatgcgcat
     4621 cagctcgtcg cctgacggcg cgtggaagat gtcttgaaac gcggcaaggc cgacggggat
     4681 gttaagggtt gtctcgaaca tctatgtcct ccggtttcgc ctgactttcg tgtttacggc
     4741 gcgagagatt agcacaaaag cgcgcatgcg gcgcaacaat cttgcgcgac ggcgcggggc
     4801 ggggcgggca aaaaaagaga ggcgcccccg agggagcgcc tctccggttt ttgagcccct
     4861 gttaccgccg cgtcacttcg cgccggactg cgcctgctgc gcgagcgcct tcgggtcgta
     4921 gggcgtctcg aggaactgct tggcgacctt ctgcgcgttg tcgaactcga tctcggactc
     4981 gacggccttc ttgtactcgt tgacggcgcg ggcgcggtcg cccttcgcgt cgtaggcgtt
     5041 gcccatcttg atgtgcgccc aggcctctat ccacgcgggg cgcaggttgc cgtcgagcgc
     5101 ggccttgaag ttgtctatgg ccgggtcgta gttgcgctgc tcgagataaa tcaggccgag
     5161 gttgtaatag acccacgagt tcgacttgtc catcttgagc gcctcttcga gctggcgctg
     5221 cgcctctatg tactgcccct cgcggaacag ctcgagcccc cgccgcgcga ccaccgagac
     5281 tcgcagctct tcggacgtgc gaagcagccg gttgtgcggg tcaacgatta tctcgatggg
     5341 cttgcccttc gactcgaagt cgaagtcctc gctcttgtcg gcgatgaaga gggtggtgac
     5401 ggcgtcgtcg ccctcggcgc gcagctgcac ctcgacgggc aggcgcaggc tctccatgtt
     5461 ctggcggact gtgccgcgcg cgcggaactt gccgccgcgc gtgcgtatga tctggtagtc
     5521 ggatgcgaac tcggggacgc ccgtgccctc gacccagcgc gcgaagaagt ggcgcatgct
     5581 ctcgccggcc acggcgttcg ccagccgctc gaagtcgtca atcgaggcgt tgcggccgcg
     5641 gaactccgag gcgtagcggc gcaggagctc gtcgaacttc tgcggcccca tcacgtcgcg
     5701 cagcattcgg aagaccatcg cgcccttgta gaagacgact gcctggtagg cggccgactg
     5761 gtcgtcgagc gtcgagggcg cgcgcgagat cgaggccgac tgctcgaaca tgagggcccg
     5821 ttccagcatg tcgcgctgcg ccgtctccag agcggcgccc tgaaggcgct gctcgcggaa
     5881 ggcgtaggaa ctccactcgg ccaggccctg cgagagccac gcgtcgtcga aggacttcag
     5941 gcccacggtc aggccccacc actggtaggc gacctcgcgc agcaaacgct cgtcgagcgt
     6001 ggcctgccgg cccgccgtga agaagcgcgg cgagaggaag gctatgccct gcccggcgta
     6061 tgcgtcgagg ctcgcgtcgt caatctgcac gactgagagg cgcgtgccga aggccggctg
     6121 cccgtacttc tgcgtgtaga actgtagggc ctcgccgacg agctgcgcgt agggctcgat
     6181 gaagccctcg ctgcccggca gcacgtagaa ggctatctcg tagccgttga tgcgaagcgc
     6241 cctcgtgatg tagcggccga cggcgaagtt gccgaccaga gtgggctggc gctgcacgaa
     6301 gcggaaggct gacttgccgg ctttggcttg cgccgcgacg ggctcgtcgc tcgcgcccgc
     6361 cacctcgtag ccggcaggca ccgtgatcgt tatctcggag gtcgcgcggt cggcggcgta
     6421 ctcgtggaag gggaaccagc gcgcggcgta catcaggtac gacatgtcgg ggccgacgta
     6481 cgcgagccgc ttcgtcgcga gcgggccgcc ctcgggcgtg acgagcgcgc ccgtccagcg
     6541 catgcgcagg gtctgcggct ggcccgcggc gacgacttcg ccgaggtcta tgcggacgtg
     6601 cgggccgatg gtgtcgaggc cggcctgatc ctggacgaag ttcgtaagct ggcggccgtt
     6661 gcgctcgatg gactcgatct tgagcgagcc gttaagctcc aggacgaccg tgcgtgtgtt
     6721 gtcgagcggc gtgaacgtca cttcgccagt ggcgttcaac tggtgctggc ccggcacaag
     6781 ctcaacgtct aggcggtagt gcgtcacgtc gaagcgcgcg cgctgacccg gctggagcgg
     6841 cgtctcggcg atggccgggg ccgcgggcgt cggggctggg ctgggggtcg ggctcggctt
     6901 ggcctgcggg gcgggcctct gtgcgccgcg tcgcgcgcgg ccgggctgct gggcggaggc
     6961 ggtcgagagc cccaggaggg cgagcgccgc cagcgataaa agcgttcggt taaaaagtct
     7021 cttcatcgtc tcgggcttcc tgcttcggaa ccatacgccc ggcgcggcct ccgtgacaag
     7081 cgtggcggag agggcggggg cgggcggcgc tgttcgcgtt tctcttctgc ggcaagcgtt
     7141 tggatgtgcc ttttccgctt gccgttgtac ggccaccccg gcttgacagg cccgccgggg
     7201 cgccttcatc ctctggcgga aaatatgagc tcaaacggcg acccggccat acgcataacg
     7261 ctcctgccga gagacacgaa cccgcagggg acgattttcg gcggcataat cctcagctac
     7321 atagacatcg ccggggcggt cgaggcgcac cggcgcacgg ggctcgaacg gttcgtgacg
     7381 gtcgccatgc gcgaggtcgt cttccacgag cctgtcttcg taggcgacct agtgagcttc
     7441 tacgcagaga cgcgccgcat cggcacgacc tccatcacca tcggcgtcgt cgtcgaggcc
     7501 gagcgctacg gcgggacatc cgagcgcata aaggtcacgg aggccgaggt catctacgtc
     7561 gccgttgacg ccaaccgccg caagatgcgc attcccgaaa acgccaaaga aaaccttgaa
     7621 aatgtagagc tacacgaaac gtcttaacgc cgtcggagcc actttgaggc tggcgttgca
     7681 cgggtggggc atacgcgaaa gaactatgct cgccacattc gcttaaacga aggttcttgc
     7741 gcgtctgccg cttggggaat ctgcaatgag cttggcgagg cgggtcacag ccgaggcggt
     7801 cggcacgggg atgctgcttg ccgccgtcgt cggctccggc ataatggggg agcggttgtc
     7861 aggcggcaac gttgccgtcg ccctgctcgc caacaccgtc gccaccggcg cggcgctcat
     7921 agccctcata ctggccttcg ggcagatttc aggcgcacac ttcaacccgg cggtgacgct
     7981 cgctgacgct tcgcaaggcg ggcttg
//
LOCUS       DASPKR010000090         7086 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_398844, whole genome shotgun sequence.
ACCESSION   DASPKR010000090 DASPKR010000000
VERSION     DASPKR010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7086)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7086
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398844"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..338)
                     /locus_tag="VD968_02630"
     CDS             complement(<1..338)
                     /locus_tag="VD968_02630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13318.1"
                     /translation="MEQILRQTWGFIFRDLSLTRRYMSWVVVFTFYAIVNSATVVLIG
                     VAANDRALTLTLLVGVLLWGFLSVLFNEIANSITYERWEGTLEYTFMAPVSRFIHLAG
                     VSIYSTFYAVV"
     gene            complement(340..1158)
                     /locus_tag="VD968_02635"
     CDS             complement(340..1158)
                     /locus_tag="VD968_02635"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE13319.1"
                     /translation="MSNLGIEVRRLHKYFRKRKGVLRKRSTDVHALRDVSFEVSLGET
                     YGLLGPNGSGKSTLIRVLSTLLVPDAGEVRLLGHRIPGEEHLVRRKIGRVSVDAAFYK
                     KLSARENLLYSALLYGMEARSAERRALEILEELGLEGEKFTGPLEEMSRGMQQKVAIT
                     RALLVNPPLLLLDEPTTGLDPKSKRDVQTFLERVRREEGTTILLTSHDMAETERLCRR
                     IGFIAHGRLIAEGTAEELKERAGAASLDDAFIALAGEKLEDGEEKERGGALVGA"
     gene            complement(1355..2692)
                     /locus_tag="VD968_02640"
     CDS             complement(1355..2692)
                     /locus_tag="VD968_02640"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HYE13320.1"
                     /translation="MPAPRNRPALERRRFLSSVGKGLGLAALSSSTVASLLKDVAAAA
                     RRVEHMTAEEAARDEDFWFEIQQAFSVTRGIVNLNNGGVSPSPRVVTEALVRYAWQQE
                     DATAYTMWQILEPQTETVRTGLAELFGCDREEVAITRNASDSLEALLFGFDLRPGDEV
                     LTTTQDYPRMLTTLRQRERREGVRLKTIKIPTPPRDPSEITAAFEAAVGPRTRLLLVS
                     HMVNITGQITPVREICEMARRRGVETIVDGAHSFAQFRFTRAELGCDYYGTSLHKWLH
                     APKGTGMLYVRRDKIAKLWPLMAAEEQQSGDIRKFEETGTRSAAPRLAVGEALLFHQG
                     VGPERKEARLRFLARYWMNNLKGLPGVRFNTSFDDRQSCAIANVQLEGTEPGALCAYL
                     MTRHKIFATPIVHEEFKGVRVTPNVYTTLKELDRFCEVMAGVTRKGLPKLPAT"
     gene            complement(2720..5221)
                     /locus_tag="VD968_02645"
     CDS             complement(2720..5221)
                     /locus_tag="VD968_02645"
                     /inference="COORDINATES: protein motif:HMM:NF013239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 31 protein"
                     /protein_id="HYE13321.1"
                     /translation="MTSSPRIRAIVPFVAALFFCLVAPAGASAAWRAAGDVKSVERQA
                     DGAVLTLTSGARASVTFRDIEVVRVRLAPSGEFERDFSYAVEPKDRKTVAATVREDRD
                     SVRISSLNGTTVVVRRSPFLVTVLDASGRVVVEDDPARPASFDPATGAVETSKRRAEW
                     EVYYGLGEKAAPTFSRDTQHFVMWNTDTYGYPRGLDPIYQSIGFFTALRHEKGKGLAY
                     GLFLDNTTRTYFDMGKTDPARITFGAASGELNYYVFTGGAERSPKKIIGDYTDLTGRA
                     PLPPLWALGNQQSRWSYFPEARVREIARRYRETRIPADVIYLDIDYMDGYRVFTWDKS
                     RFPDPPKLISDLRRDGFRTVLIIDPGIKVDENYRVYKEGRDGGHFVKAADGSEFHGSV
                     WPGVCAFPDFTSAKAREWFASYYSRHLEEGVAGFWNDMNEPGIFLSDKTPKPDIYHHP
                     MKTFPLDARHAGDGRPGTHARYHNVYGMQMARSTFEGLRRLRPEERPFVLTRAGYAGV
                     QRFSAVWTGDNVASWDHLRLSVTMLLNMGVSGVPFVGSDVGGFSGSPSAELYARWLQA
                     AALTPFLRSHTEANTKDQEPFAYGPAFTDINRASIELRYRLLPYLYTLFEEHTRTGAP
                     VMRPLWLEYPDDSRTYLADDEYMVGRDLLVAPVLSEGAVKRRVYFPAGDAWVDWWTGR
                     RYEGGTDAEVDAPLNRLPLFARAGAAIPTQPVVQHTGEMPKAPLTLVVVAGGRAPAAS
                     RIYEDAGEGYEHLRGASRTTTAAVDGNSVKLSRSGSYNSARSLASIEFLGVTSAPREA
                     RAGGRPAAGLAFDAAAGRATVPMPPGGADEISIVP"
     gene            complement(5278..6999)
                     /locus_tag="VD968_02650"
     CDS             complement(5278..6999)
                     /locus_tag="VD968_02650"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HYE13322.1"
                     /translation="MRLRTTFAGLLAFALCLSIAPVGALSARAPRRQTPATLLLFNGK
                     VFTADARGTVAEAVAVSGNRIVAVGTTAGLRSRFRAEREVDLRGRLVTPGFNDAHIHF
                     IGGGLSLLRVDLNGARTLEEAKRRVAARAREVKPGAWVLGRGWDHTLWGGQWPTRKDL
                     DEVAPDNPVFLQRVDGHVSWANSLALQKAGVTAATRAPEGGEILRDASGEPTGILKET
                     AAGLVGRVVPQPTAEEMAEGLGRALAEARRYGITSVQDNSGYEATKLYREFLKSGRLT
                     VRVAEWQNFEDKVEELKRQRAEFAAFKDDPLLLRLTALKGYVDGTLGSRTAAMLAPFS
                     DDPNNSGIPRRPPEELTRMIVERAKEGFQIALHAIGDRANRMALDGFAAAAGQPLSQA
                     ASPFRHRVEHAQVVAPTDFARFRDLGVVASMQPSHAISDKRWAQERLGEYRVLGAYSW
                     HTMMAHGVRVPFGTDWPVEPINPYLGLYAAVTRQSTEGDPAGGWWPQERLSVADAIRC
                     YTAEGAYASFEEREKGQIAAGMLADLVVHSRDLLTIKPEEILQTEADMTVFDGRVVHE
                     RKPAPAG"
BASE COUNT         1087 a         2298 c         2500 g         1201 t
ORIGIN      
        1 acgaccgcgt agaaggtcga gtagatgctc acgcccgcca ggtgtatgaa ccgcgagacc
       61 ggcgccatga acgtgtactc cagcgtcccc tcccagcgct cgtaggttat cgagttggct
      121 atctcgttaa agagcactga gaggaagccc cacagcagca cgcccaccag gagcgtcaaa
      181 gtcagcgcgc ggtcgttcgc cgcgacgccg atgagcacaa cggtcgccga gttcactatc
      241 gcgtagaagg tgaagaccac cacccacgac atgtagcgcc gcgtcaggct caggtcgcgg
      301 aagatgaagc cccacgtctg cctaagtatc tgttccattt caggccccca ccagcgcgcc
      361 gccgcgctcc ttctcctcgc cgtcctcaag cttctcgccc gcgagcgcta tgaacgcgtc
      421 gtcgagcgag gccgcgcccg ccctctcctt caactcttcg gccgtgcctt cggcgatgag
      481 gcggccgtgc gcgatgaagc ctatgcgccg gcacagccgc tcggtctccg ccatgtcgtg
      541 cgaggtgagc aggatggtcg tcccctcctc gcgccgcacg cgctctaaaa aggtctgcac
      601 gtcgcgcttg ctcttcgggt cgagccccgt ggtcggctcg tccaggagca ggagcggcgg
      661 gttgaccaga agagcgcgcg ttatcgccac cttctgctgc atgccgcggc tcatctcttc
      721 gagcggcccg gtgaacttct cgccttcgag gcccagttct tcgagtatct cgagcgcgcg
      781 ccgctcggcc gagcgcgcct ccatgccgta gagcagggcg gagtagagga ggttctcgcg
      841 cgccgagagc ttcttgtaga aggccgcgtc cacgctcacg cgcccgatct tccggcgcac
      901 gaggtgctcc tcgcccggta ttcggtggcc gaggaggcgc acctcgcccg cgtcggggac
      961 gagcagcgtc gagagcacgc gtatgagcgt tgacttgccc gagccgttcg gccccagcag
     1021 cccgtaggtc tcgcccagcg agacctcgaa cgacacgtcg cgcagcgcgt gcacgtccgt
     1081 agagcgcttg cgcaggacgc ctttgcgttt gcggaagtat ttgtgaagac ggcggacttc
     1141 tatgcccaga ttcgacattg gcctacacac ctttccggcc gattgcgtag ccggataacc
     1201 gctttccagt tttggggtgg aaagagaaga gacgacggtt cggtcgtctg cggcgggttc
     1261 taagcgagcc agatgcgaat catgaacttc atgtcgagcc tcacttctcg tgggtgaggg
     1321 caaggatagg ctacggcgcg gcttttggca agctttatgt cgccgggagc ttgggcagcc
     1381 cttttcgggt gacgccggcc atgacttcgc agaagcggtc gagctccttg agggtcgtat
     1441 agacgttggg cgtgacgcgc acgcccttaa actcttcgtg aacgatgggc gtggcgaaaa
     1501 tcttgtggcg ggtcatcagg taagcgcaca gcgcgcccgg ctcagtgcct tccagttgga
     1561 cgttcgcgat ggcgcaggac tggcggtcat cgaaggaggt gttgaagcgc acgccgggca
     1621 ggcccttcag gttgttcatc cagtagcgtg cgaggaagcg cagccgcgcc tccttgcgct
     1681 cggggcctac gccctggtgg aagagcagcg cctcgcctac ggccagacgc ggcgcggccg
     1741 agcgcgtccc cgtctcctcg aacttcctga tgtcgccgga ctgctgctcc tccgcggcca
     1801 tgagcggcca tagcttcgct atcttgtccc tgcggacgta gagcatcccc gtccccttcg
     1861 gcgcgtgcag ccacttgtgc agagaggtgc cgtagtagtc gcaccccagc tcggcgcgcg
     1921 tgaaacggaa ctgcgcgaag gagtgcgcgc cgtccactat cgtctcgacg ccgcggcggc
     1981 gcgccatctc gcatatctcg cggacgggag ttatctgccc cgttatgttg accatgtgcg
     2041 agaccagcag gagccgcgtg cgggggccga cggcggcctc gaacgcggcg gttatctcgg
     2101 aagggtctcg gggcggcgtc gggattttta ttgtcttaag ccttacgccc tcgcgccttt
     2161 cgcgctggcg cagggtggtg agcatgcgcg ggtagtcctg cgtggtggtg aggacttcgt
     2221 cgccgggcct gaggtcgaag ccgaagagca gggcttcgag cgagtccgag gcgttgcgcg
     2281 tgatggcgac ctcctcgcgg tcgcagccga acagctccgc gagccccgtc ctcaccgtct
     2341 cggtctgcgg ctctagtatc tgccacatcg tgtaggccgt ggcgtcctcc tgctgccacg
     2401 cgtatcgcac cagagcctcc gtgacgacgc gcggcgaggg cgagacgccg ccgttgttta
     2461 aattcacgat gccgcgcgtg accgagaagg cctgttgaat ctcgaaccag aagtcctcgt
     2521 cccgcgcggc ctcttcggcc gtcatgtgct cgacgcgacg cgcggccgcc gcaacgtcct
     2581 tgaggagcga cgcgaccgtc gaggacgaga gcgcagccag ccccagcccc ttgccgacgg
     2641 acgagaggaa gcggcggcgt tcgagcgcgg ggcggtttcg tggtgcgggc atggctttta
     2701 acctccgggc cgcgcgggcc tacgggacta tcgaaatctc gtcggcgccg ccgggcggca
     2761 tggggacggt ggcgcggccc gccgcggcgt cgaaggcgag gccggcggcg gggcggcccc
     2821 ccgcgcgcgc ctcgcgaggc gcggaggtca cgccgaggaa ctctattgag gcgagcgagc
     2881 gcgccgagtt gtaagagccg gagcgcgaga gcttgacgga gttgccgtca accgcggcgg
     2941 tcgtcgtgcg cgaggcgccg cgcaggtgct cgtagccctc gcccgcgtcc tcgtagatac
     3001 ggctcgccgc aggggcgcgc ccgcccgcga cgacgacgag cgtgagcggc gccttcggca
     3061 tctcgcccgt gtgctgcacg accggctgtg tggggattgc cgcgcccgcg cgcgcgaaga
     3121 ggggcagtcg gttcaggggc gcgtcaactt ccgcgtccgt gccgccctcg tagcggcggc
     3181 ccgtccacca gtcaacccat gcgtcgcccg cggggaaata gacgcgccgc ttgacggccc
     3241 cctccgagag caccggcgcc accagcaggt cgcggccgac catgtactcg tcgtcggcga
     3301 ggtaggtgcg cgagtcgtcc gggtattcga gccagagcgg gcgcatcacg ggcgcgcccg
     3361 tgcgcgtgtg ctcctcgaag agcgtgtaga ggtaggggag cagccggtag cgcagctcga
     3421 tgctggcgcg gttgatgtcc gtgaacgcgg ggccgtatgc gaagggctcc tggtcttttg
     3481 tgttggcctc ggtgtgcgag cgtaggaacg gcgtgagcgc ggcggcctgt agccaacgcg
     3541 cgtaaagctc ggcagagggg ctgccggaga agccgcccac gtccgagccg acgaagggca
     3601 cgccggagac gcccatgttt aagagcatcg ttaccgaaag ccgcaggtga tcccaactgg
     3661 cgacgttgtc gcccgtccag accgcggaga agcgctgcac tccggcgtag cctgcgcgcg
     3721 tcaggacgaa ggggcgctcc tcgggcctga gccgacgcag tccctcgaag gtcgagcgcg
     3781 ccatctgcat cccgtaaacg ttgtggtagc gcgcgtgcgt gccgggccgg ccgtcgcccg
     3841 cgtggcgcgc gtcgagcggg aaggtcttca tcgggtggtg gtagatgtcg ggcttgggcg
     3901 tcttgtcgct caggaagatg cccggctcgt tcatgtcgtt ccagaagcct gcgacgccct
     3961 cttcgaggtg ccggctgtag taggaggcga accactcgcg cgccttcgcg gaggtgaagt
     4021 cggggaaggc gcagacgccg ggccagaccg agccgtgaaa ctccgagccg tccgcggcct
     4081 tgacgaagtg gccgccgtct cgcccctctt tgtaaacgcg gtagttctcg tcaaccttta
     4141 tgccggggtc aataatcagg acggtgcgga agccgtcgcg gcgcaggtcg gagatcagct
     4201 tcggcgggtc ggggaagcgc gacttgtccc aggtgaagac gcggtagccg tccatgtagt
     4261 caatgtcgag gtagataacg tcggcgggta tgcgcgtctc gcggtagcgt cgcgcaatct
     4321 cgcgcacgcg cgcctcgggg aagtaagacc agcgcgactg ctggttgccc agagcccaga
     4381 gcggcgggag cggcgcccgc cccgtcaggt cggtgtagtc gccgatgatt tttttaggcg
     4441 agcgctcggc gccgcccgtg aagacgtagt agttgagctc gcccgacgcc gcgccgaacg
     4501 tgatgcgcgc cgggtcggtc ttgcccatgt cgaagtatgt gcgcgtcgtg ttgtcgagga
     4561 agaggccgta ggcgaggccc ttgcccttct cgtgcctgag cgccgtgaag aagccgattg
     4621 actggtatat ggggtcgagg ccgcgcgggt agccgtaggt gtccgtgttc cacatcacga
     4681 agtgctgcgt gtcgcgcgag aaagtgggcg cggccttctc gccgaggccg taatagactt
     4741 cccactccgc ccgcctctta gaagtctcga cggcgcccgt cgcggggtcg aacgaggctg
     4801 gccgcgccgg gtcgtcctcg acgacgacgc ggcccgacgc gtcgagcacg gtgacgagga
     4861 aggggctgcg gcgcacgacg acagtcgtgc cgttcaagga ggagattctt acggagtcgc
     4921 ggtcttccct gaccgtggcc gcgacggtct ttcggtcttt cggctcgacg gcgtaggaga
     4981 agtcgcgctc gaactcgccc gagggcgcga gcctgacacg cacgacctct atgtcgcgga
     5041 acgtgaccga ggcgcgcgcc cccgacgtga gcgtgagcac ggcgccgtcg gcctgcctct
     5101 cgacgctctt cacgtcgccg gcggcgcgcc acgcggccga ggctcccgcc ggcgcgacga
     5161 gacaaaagaa gagggcggcg acgaagggga cgatggctcg gattctcggg ctgctggtca
     5221 taagtcggtc gtgcgcgtcg gagttgtctc ggaggcttcg gcgggggcgg ggcgtcgtca
     5281 gcctgccggc gctggcttcc tttcgtggac gacgcggccg tcgaagacgg tcatgtcggc
     5341 ctcggtctga agaatctctt cgggcttaat agtcagtaag tctctggaat ggacgacgag
     5401 gtctgcgagc atgccggcgg caatctgccc cttctcgcgc tcctcgaagg atgcgtaggc
     5461 gccctcggcc gtgtagcagc gtatggcgtc ggcgacggag agccgctcct gcggccacca
     5521 gccgcccgcg gggtcgccct cggtgctctg tcgcgtgacg gcggcgtaga ggccgaggta
     5581 agggttgatg ggctcgacgg gccagtcggt cccgaacggg acgcggacgc cgtgggccat
     5641 catcgtgtgc cacgagtagg cgccgagcac gcggtactcc cctaagcgtt cttgcgccca
     5701 gcgcttgtcc gagatggcgt gcgagggctg catcgaggcg acgacgccga ggtcgcggaa
     5761 gcgcgcgaag tcggtgggcg cgaccacctg cgcgtgctcg acgcggtgcc gaaacggcga
     5821 ggcggcctgc gagagcggct gcccggccgc ggcggcgaac ccgtcgagcg ccatgcggtt
     5881 ggcgcggtcg ccgattgcgt gaagcgcgat ttgaaagcct tctttcgccc gctcgactat
     5941 catgcgcgtc agctcctcgg gcgggcggcg cgggatgccg ctgttgttcg ggtcgtctga
     6001 gaagggcgcg agcatcgcgg cggtgcgcga gccgagagtg ccgtcaacgt agcccttgag
     6061 cgccgtcagc ctgagcagca gagggtcgtc cttgaacgcg gcgaactcgg cgcgctggcg
     6121 cttcaattcc tcgaccttgt cctcgaagtt ctgccactcg gcgacgcgca cggtgagcct
     6181 gcctgacttc aaaaactcgc ggtagagctt cgtcgcctcg tagcctgagt tgtcttgaac
     6241 cgaagttatc ccatagcgcc gagcctcggc gagagcgcgc ccgagcccct cggccatctc
     6301 ctcggcggta ggctgtggca cgacgcggcc caccagcccc gccgccgtct ccttcagaat
     6361 cccggtcggc tctccagacg cgtcgcgcag aatctcgccg ccctcgggcg cgcgcgtcgc
     6421 ggcggtgact ccggccttct gcaacgcgag cgagttcgcc cagctcacgt ggccgtccac
     6481 acgctgtagg aagacggggt tgtccggcgc gacttcgtcc aggtctttgc gcgtcggcca
     6541 ctggccgccc cagagcgtgt gatcccatcc gcgccccaga acccacgcgc ccggcttcac
     6601 ctcgcgcgcg cgcgcagcca cgcgccgctt cgcctcttcg agcgtgcgcg cgccgtttaa
     6661 gtcaacgcgg agcagggaga ggccgccgcc gatgaagtgt atgtgcgcgt cgttgaagcc
     6721 gggcgtgacg agccggccgc gcaggtcaac ctcgcgctcg gcgcggaagc gcgagcggag
     6781 cccggcggtc gtgcctactg cgacgatacg gttgcccgag acggccactg cctcggcgac
     6841 tgtgccgcgc gcgtcggccg tgaagacctt gccgttgaag agtagaaggg tggcgggcgt
     6901 ctgccgccgc ggggcgcggg ccgagagcgc gccgacgggc gcgatcgaga ggcacagcgc
     6961 gaaggccagc aggccggcga aggttgtgcg caggcgcatc gtctatgttt tcttcggaag
     7021 aggttcgaga gcgaacgcct ttatatcacc aaaccggcgc gattcgtaga gccgcagcgc
     7081 cggcta
//
LOCUS       DASPKR010000091         5536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_140540, whole genome shotgun sequence.
ACCESSION   DASPKR010000091 DASPKR010000000
VERSION     DASPKR010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5536)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5536
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140540"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..656
                     /locus_tag="VD968_02655"
     CDS             <1..656
                     /locus_tag="VD968_02655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13323.1"
                     /translation="RMASAGAPKRNGRPALFRLAFVPVAAAACLLVVAAGSLYVWQQR
                     KTTPAVATQAGGDGGRARPVQVAESREGEGAASSARDDEGGADSNDAAPADADNNSGR
                     GQKTVRGARRARAFEPARRASTTDVRSEGGGFEFTQHGASVIAGPGRTGQRVASATAL
                     RIPLRASAEPLEVLFRDERGALQRVPMRSVSFGSQEPVAGVRAKAVPASLKSREGVW"
     gene            661..2637
                     /locus_tag="VD968_02660"
     CDS             661..2637
                     /locus_tag="VD968_02660"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HYE13324.1"
                     /translation="MTFAVPNFMRAAAFRASALACALVLSAPAAAAQEAAAPLPPGQA
                     TPVAQPPAAFAEQKPSARTAPRAPVPKAPQPAAAPAQAPRPAQPAAPAAPPRVVTVVH
                     RLSGWKLLAWLAASGPAFEIDELPSSSDVLTNVVAGFVSRDNKTVVARLPRAEAELEP
                     TPSPASAPGFFAGQSVQSPEQSGFTLVTSDGRRIPAKFIGLDAPTGLSMLEAAEPLVA
                     PGAHPFGDEGDTEDPSVGQTVKLYAPALLEATQTPAARPAPPAAGYVYMSIFQTEGKL
                     TEIKRAPSGKPSEVVARAASATPAWTGAIATDGEGSVLGIVSRSGSGETQIVPVQTMR
                     LALERVLARGASVPQPWLGARGDAAYRTAIELWEKKGWRPEKAMPFIREGRGVLLTSV
                     APGTPAATAGLRPGDVVWRVGDRDVRGVEDLSSVIQEAGAGSTLDFTVWRSFETEPLK
                     FAVELRGSQNPALATADRELSAARARLRALNADVQSYKLELQRLKGSARTSDEAALAE
                     MSSRVRAAEESIAEVLRQVTEAEMRVAEAAARGEWSARFSHAPAPPGPAAPSPLQSFG
                     LRAVGLTPRSAARLGASGGALVLSVRPESQAAGAGLRAGDVVETINGRRFSLLDLRRL
                     LRNPGAGTLTLVVVRDRKRQIVTLPPAPEPPRQP"
     gene            2792..4144
                     /locus_tag="VD968_02665"
     CDS             2792..4144
                     /locus_tag="VD968_02665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13325.1"
                     /translation="MLQEAVECYHRLLEDRELAESSRRLLDEGLERAKLIFGGRRLSP
                     YLRPHFVTEQDFERVTRVCETVWGAIQKVKDAAVEDESVVDELGLTEVERELVRIDPG
                     YRAVSPTSRLDSFLIEDDYNFVELNGESPAGIAYADAAFEIFTGLPVMRRFAESYRLR
                     RFHGSPLMLETLLAAYREFAGARAVERPSIAIVDLKGLPTQKEFELFREFFEREGYPA
                     AICSPDELEFSGGRLRSGPFEIDIVYKRLLVNEYLPIMEESPALLDAYRARAFCMVNS
                     FRSKLIHKKALFAVLTDERYARLLTEREREVIAAHVPWTRKVRPGKTTKGGEEIDLLE
                     YVSANRDRLVLKPNDDYGGHGIYIGWGCEGASWGEAISAALDDGDYLVQERVRTARET
                     FPALGEDGSVVFAEQLVDLDPLLFNGRVGSAFTRLSSTELANVSSGGGMVPTFIIGRN
                     "
     gene            4162..4488
                     /locus_tag="VD968_02670"
     CDS             4162..4488
                     /locus_tag="VD968_02670"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HYE13326.1"
                     /translation="MNFVNSETPQDERRRFERSRLIIDVFFDGADLTGVASTKDISPG
                     GLYMNTRSELPEGAALTLRIPLEGRDVVCNGEVVYSNPGRGVGVTFQGLSDEDRAAIE
                     RVVAKG"
     gene            4527..>5536
                     /locus_tag="VD968_02675"
     CDS             4527..>5536
                     /locus_tag="VD968_02675"
                     /inference="COORDINATES: protein motif:HMM:NF010039.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylate-amine ligase"
                     /protein_id="HYE13327.1"
                     /translation="MTPERYTLGIEEEFHIVDPQTRELRSRVTEILEEGTTILGEQLK
                     PEMIQSQIEVGTNICANIEEARTDITRLRSVISGLARSKGLEIVAASTHPISHWRDQQ
                     IFNDARYKLLIDELQMVASSLLICGMHVHVGIPDRERQVHIMNATRYFLPHVLALSTS
                     SPFWLGFNTGLKSYRSEVFKKFPRTDIPDHFDSYDAFERYVSLLVKTGCIDNGKKIWW
                     DVRPHPFFPTLEFRVCDIPTRIDDTVAISALIQAIVAKLDRLIDKNLGFRLYRRALIQ
                     ENKWRAVRYGLGGKLIDFGKQKEVPVCDLIRELLEFVDDVLDDLGSRREVEHINTILD
                     RGT"
BASE COUNT          895 a         1983 c         1801 g          857 t
ORIGIN      
        1 cgcgcatggc ctcggccggc gccccgaaac gcaacggccg cccggcgctc ttccgtctcg
       61 cgtttgtccc ggtggctgcc gcggcgtgcc tgctcgtcgt cgccgctggc tcgctctacg
      121 tctggcagca gaggaaaacg accccggccg tggcaacaca ggccggcggg gatggcgggc
      181 gggcgcggcc cgttcaggtc gctgagagcc gcgagggcga aggtgccgct tcgtcggcgc
      241 gtgatgatga aggcggcgct gactcgaacg acgccgcgcc cgccgatgct gataacaatt
      301 ccgggcgcgg gcagaagact gtgcgcggcg cgcggcgtgc gcgcgccttt gagcctgcga
      361 ggcgggcttc tacgaccgac gttcgttcag aaggcggcgg cttcgagttc actcagcacg
      421 gcgcgagcgt catcgcaggc cccggccgca cgggacagcg ggtcgcgtcc gcgacggcct
      481 tgaggattcc gcttcgcgcc tcggcggagc cgctcgaagt cctgttcagg gacgagcgcg
      541 gcgcgttgca gcgcgtgccg atgcgctcgg tcagcttcgg ctcgcaggag ccggtcgcgg
      601 gcgtgcgcgc caaggccgtc cccgcctcgc tcaagagcag ggagggcgtc tggtagtttt
      661 atgactttcg ccgttccgaa tttcatgcgg gccgcagcgt tccgggcgtc agcgctcgcg
      721 tgcgcgctcg tcctgtccgc cccggccgcc gcggctcagg aggccgcggc ccctctgcca
      781 cccggccagg cgaccccggt cgcgcagccg cctgccgcct tcgcagagca gaagccgtcg
      841 gcgaggactg cgccgcgcgc gcccgtgccg aaggcgccgc agccggctgc ggcgcccgcg
      901 caagcgccgc gccccgcaca gccggctgcg ccggccgcgc cgccccgagt cgtgacggtc
      961 gtgcaccggc tgagcggctg gaagctactc gcctggctcg ccgcgagcgg cccggccttc
     1021 gagatagacg aactgccttc aagctccgac gtgctcacga acgtcgtcgc tggcttcgtc
     1081 tcgcgggaca acaagactgt cgtcgcgcgc ttgccccgag ccgaggcgga gcttgagcct
     1141 accccctcgc cggcctccgc gcccggcttc ttcgcgggcc agtccgtgca gtcgcccgag
     1201 cagtccggct tcacgctcgt cacgtcagac ggccgccgca tccccgcgaa gttcatcggc
     1261 ctcgacgccc cgaccggcct ctcgatgctc gaagccgccg aaccgctcgt cgcgccgggc
     1321 gcgcacccct tcggcgacga gggggacacg gaagaccctt cggtcggcca gacggtcaag
     1381 ctctacgcgc ccgcgctgct cgaagccaca cagacgcccg ccgcacggcc cgcgccgccg
     1441 gccgcgggct acgtctatat gagcatcttc cagacggaag gtaagctgac cgaaatcaaa
     1501 cgcgcgccct cgggaaagcc ctccgaggtg gtcgcgcgcg ccgcgagcgc gacgcccgcc
     1561 tggactggcg ccatagcgac cgacggcgag ggctccgtcc tcggcatcgt ttcgcggagc
     1621 ggatcgggcg agacgcagat tgtgcctgta cagacgatga ggctcgcgct ggagagagtg
     1681 ctcgcgcgcg gcgcgagcgt gccgcagccc tggctcggcg cacggggcga cgcggcctac
     1741 cgcaccgcca ttgagctttg ggagaagaag ggctggcggc ccgagaaggc catgcccttc
     1801 atacgcgagg ggcgcggcgt gctgctcact tcggtcgccc ctgggacgcc agccgcgacg
     1861 gccgggctac ggcccggcga cgtggtctgg cgcgtcggcg accgcgacgt tcgaggcgtc
     1921 gaagacctct cttctgtcat acaggaggcc ggcgcgggct cgactttaga cttcaccgtc
     1981 tggcgctcgt tcgagaccga gccgctcaag tttgcagtcg agcttagggg ctcgcagaac
     2041 cccgcgctcg ccacggccga ccgggagctt tcggcagcgc gcgcccgcct gcgagccctg
     2101 aacgcagacg ttcagtccta caagctcgaa ttgcagaggc tcaagggctc tgcgcgaacc
     2161 tccgacgagg ccgcgctcgc cgagatgtct tctcgcgtgc gtgcggcgga agagtcaatc
     2221 gccgaggtgc tccgacaggt caccgaggca gagatgcgcg tcgccgaggc cgccgcgcgc
     2281 ggcgagtgga gcgcgcgctt ctcgcacgcc ccggccccgc ccggccccgc cgccccgagc
     2341 ccgctacaat ccttcggcct gcgcgcggtg ggccttacgc cccggagcgc cgcgaggctc
     2401 ggcgcctccg gcggcgcgct cgtcctctca gtccggcccg agagccaggc cgcgggcgcg
     2461 ggccttcgcg caggcgacgt ggtcgagacc atcaacggcc gccgcttctc gcttctagac
     2521 ctccgacggc tcctccgcaa ccccggcgcg ggcacgttga ccctcgtcgt cgtccgcgac
     2581 cgtaagcggc agatcgtcac gctcccgccc gccccggaac cgccccggca gccataagcc
     2641 cggttgcgga atgggggtta agagacaggc tcttctaatc cgcattccga agcccgcatc
     2701 ccgcaatcgc tttttcccca ccggcacgca tctgtgctaa tcttgtccca ccgctcgttt
     2761 taacgaaccc acggaaggct ctcgaacaga aatgcttcaa gaggcggttg agtgctacca
     2821 ccggctgctc gaggataggg aactggccga atcctcccgg cgattgctcg acgaggggct
     2881 ggagcgtgct aagctcatct tcggcggccg ccgcctctcg ccctacctcc gcccgcactt
     2941 cgttaccgag caggacttcg agcgcgtcac gcgcgtctgc gagacggtct ggggcgcgat
     3001 tcaaaaggtt aaagacgccg ccgtcgagga cgagtccgtg gttgacgagc ttggcctgac
     3061 cgaagtagag cgagagctgg tgcgcattga ccccggctac cgcgccgtgt cccccacctc
     3121 gcgcctcgac tcgtttctga tcgaggacga ctacaacttc gtcgagctga acggcgagag
     3181 ccccgccggc atcgcctacg ccgacgccgc cttcgagatt ttcaccggcc tccccgtcat
     3241 gcggcgcttc gccgagagct accgcctgcg ccgcttccac ggcagccccc tcatgctcga
     3301 aacgctcctc gccgcctacc gcgagttcgc cggggcgcgc gcagtcgagc gcccctccat
     3361 cgcaatcgtt gatttgaagg gcctgcccac gcagaaggag ttcgagctgt tccgcgagtt
     3421 cttcgagcgc gaaggctacc ccgcggccat ctgctcgcca gacgagcttg agttctcggg
     3481 cgggcgcctg cgctcgggcc cgttcgagat agacatcgtc tataagcggc tgctcgtcaa
     3541 cgagtatttg ccgataatgg aagagtcgcc ggcgctcctc gacgcatacc gcgcgcgagc
     3601 cttctgcatg gtcaacagct tccgctcgaa gctcatacac aagaaggcgc tcttcgccgt
     3661 cctcacggac gagcgctacg cccgcctcct caccgagcgc gagcgcgagg tcatcgcggc
     3721 gcacgtcccc tggacgcgca aggtgcggcc ggggaagacg acgaagggcg gcgaagagat
     3781 tgacctgctc gagtacgtga gcgcgaaccg cgaccgactg gtgctgaagc ccaacgacga
     3841 ctacggcggc cacggcatct acatcggctg gggctgcgaa ggcgcgtcgt ggggcgaggc
     3901 catctccgcg gcgctcgacg acggcgacta cctcgtgcaa gagcgcgtgc gcacggcgcg
     3961 cgagaccttc ccggccctcg gcgaggacgg ctctgtcgtc ttcgccgagc agttggttga
     4021 cctcgaccca ctgctcttca acggccgagt aggctcggcc ttcacgcggc tctcctcgac
     4081 ggagcttgcc aacgtctcgt cggggggcgg aatggtgccg accttcatca tcggcagaaa
     4141 ctagcgcggg ggtcttcgga gatgaacttc gtcaacagcg agacgccgca ggacgagcgc
     4201 aggcgcttcg agcgctcgcg cctcatcata gacgtgttct tcgacggcgc cgacctgacc
     4261 ggggtcgcga gcaccaaaga cataagccca ggcggcctct acatgaacac gcggtcggag
     4321 ctgccggagg gcgccgcgtt gaccttgcgc atccccctcg aagggcgcga cgtggtctgc
     4381 aacggcgagg tcgtctatag caaccccggc cgcggcgtgg gcgtcacctt ccaggggcta
     4441 tccgacgaag accgcgccgc gatagagcgc gtagtggcga agggctgagc ggcgcggagc
     4501 cggcagcctc acagggggaa tacgagatga ctccagaacg ctacacactc ggcatcgagg
     4561 aggagttcca catcgttgac ccgcagacgc gggagctgcg ctcgcgcgtg accgagatac
     4621 tggaggaggg gactacgatc ctcggcgagc agctcaagcc cgagatgatc cagtcgcaga
     4681 tagaggtcgg caccaacatc tgcgccaaca tcgaggaggc gcgcaccgac atcacgcgac
     4741 tgcgctcagt catctccggc ctcgcgcgct cgaaggggct cgaaatagtc gccgcctcca
     4801 cgcaccccat ctcgcactgg cgcgaccagc agatcttcaa cgacgcgcgc tacaagctcc
     4861 tcattgacga gcttcagatg gtcgcgagct cgctgctcat ctgcggcatg cacgtccacg
     4921 tcggcatccc cgaccgcgag cggcaggttc acataatgaa cgccacgcgc tacttcctgc
     4981 cgcacgtcct ggcgctctcg acctcttcgc ccttctggct cggcttcaac acgggtctga
     5041 agtcctaccg ctcagaggtc ttcaagaagt tcccgcgcac cgacatcccc gaccacttcg
     5101 attcctatga cgccttcgag cgctacgtca gcctgctcgt caagaccggc tgcatagaca
     5161 acggcaagaa aatctggtgg gacgttcggc cgcacccctt cttcccgacc ttggagttcc
     5221 gcgtctgcga cataccgacg cgcatagacg acacggtagc aatctccgcc ctcatccagg
     5281 ccatcgtcgc caagctcgac cgcctgatag acaagaacct cggcttccgg ctctaccgcc
     5341 gcgcgctgat acaggagaac aagtggcgcg ccgttcgcta cgggctcggc ggcaagctga
     5401 tagacttcgg caagcagaag gaagtccccg tgtgcgacct catacgcgag cttctggagt
     5461 tcgtggacga cgtgctcgac gacctcggct cgcgccgcga ggtcgagcac atcaacacga
     5521 ttctggatcg cggcac
//
LOCUS       DASPKR010000092        11627 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1175499, whole genome shotgun sequence.
ACCESSION   DASPKR010000092 DASPKR010000000
VERSION     DASPKR010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11627)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11627
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1175499"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1298)
                     /locus_tag="VD968_02680"
     CDS             complement(<1..1298)
                     /locus_tag="VD968_02680"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13328.1"
                     /translation="MLARKLFCLALLVAAPWPPAAAGQDGGGGARPRPTPDELARHLS
                     AAETFQLSGDLARAGAENRAVAGIALARLGAIAIRERQLQAAVRLLRESLAAREDARA
                     RTDLAIAHMRLLEVDAAVAEARAALGLDEKNARARHVLGKLLYMKADYAAARAELERA
                     VVLEPDLDAAYTLGMTYLRLRQLDRAKLLFEEMQAALGGSAQAHVLFGRAYQETGYPA
                     EAEAQFRRAIAVDPKAPRAHFYLAYVILREGGSERLKEAAEGFEREARQSPQDFYAQF
                     FAGVLAAGDGDHAKAVRHLSEAVRLKPESGDAHLYLGQSQAELNDPAAEKTLRRAVEL
                     TTDVSQQSFQVKRAHFLLGRILLKSGRREEAERELAKARELQGQSLESSRQEVGAIVN
                     QVASPPSAPSPPGEATAPSHLVASGDKGGGAAAEPGGDGVL"
     gene            complement(1513..5046)
                     /locus_tag="VD968_02685"
     CDS             complement(1513..5046)
                     /locus_tag="VD968_02685"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE13329.1"
                     /translation="MSEATTCRSQAPVRGALALCLLLALLAGAAAPASAQKSSGQITG
                     SVVDPNGAALPDTAIVVTQVGTNLRREVNTNQDGIYSVPDLPSGTYRITATKTGFKEA
                     IVENLTVNVATTTRQDLTMEVGQVGETVNIVASDVQIQQETGALGDVVTGEQVRELPL
                     NGRSFVQLTQLQPGVSPAANFDSKNKGLFSGVDFSVNGNTTQSNLFLIDGANNNDTGS
                     NRTILLYPSIEAIGEFTMLRNSFSPEYGQASGAIISIVTRGGENAFHGSLFYFGRNDA
                     LNAADYFANKVGGRKDKLRRNDFGGSIGGPIIKDRLFFFYSQEFNKEIRGQTRFGSVP
                     TLAERRGDFSQPRFAPNGQRCSGPAIGNGRPGSDTQVIPQASLSPAGLALVNVYPEPN
                     IPSPNDCNNWRESTNSPIDFREENVRIDLKVNNNHRLFGRYTQDHWENPAPILFNAGL
                     WGDDAFPGVESSWQQPSRQAAIKLSSTIGGEAVNEVQFSYSANRINITPELGGDINES
                     LSTLIPGFFPESIKLNEGQRAHPTFWGGIAPYGSNFGPDLWTAAPWKNALDIYSFRDD
                     FSKVKGNQTFKLGFLYDRASKDEDSLGAAASESPQFWGACCANNSGNYLADILTRGSR
                     FGFAETSTQPVALTRYRNFELYFGDTWKVRPNLTLELGTRYSYFPEPFDAEDRMSSFD
                     LRFYDPTRPPSDFCNGLVVPPGTNPCAGIPGQSTPREGVNRALRENDKNAIAPRLGLA
                     WDPFGNGKTAIRAGLGQFFQRERVSIALGMVANAPFALGIGGERTLDDNGPGTFVVSG
                     PPGGAPSRSQDPSALLPNTWQWNLTVDQELWKDAVLEVGYVGNRALHQLISYDVNQVL
                     PQNRVAAAFCPDGGCVNNLRPARNFGFIVGFARAGTADYHSMQTMFKTRLFGRSQLQA
                     AYTWSHSIGDAPLDDSSGGASVNTRTDTYDGRIDRGNTGIHRPHIFVLNTVMYLPTFK
                     GSNGFVRSALGGWEFATIYTASSGSAITPRVANGSISNLQQGGLAGTGTSQSNVRPNR
                     APGVPCRPSGGDPEQIINPEAFTLVGAVIGEPGDASRGSCLGPGINNVDMSFYKNFTP
                     SWLKGTFGEAARVQFRLEFFNAFNHTQFRADSLQNNMFVNAGGNPVVCGLTPCSPTNR
                     VITGFTRNGGFGRSGTTRGPREIQYALKLVF"
     gene            5518..6909
                     /locus_tag="VD968_02690"
     CDS             5518..6909
                     /locus_tag="VD968_02690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13330.1"
                     /translation="MELQKEQKLAQLERVLNSRALQNSESLKAFLRFVVEKTVEEGEV
                     QLKEYVIATEVFGRNSDYDSRIDSVVRVQAGRLRAKLQEYYATEGKADRIVIDLPKGH
                     YHPVFTHAGDHGHEPATTAAAVHTSEAGANGHAPAGHAPDALTSTETAAPGVVRRVPL
                     LLGFVIALLCVSVAGLAVWNRELRRQAEAARARPSDSAEFRAVWGAIMSDPEPPLLVL
                     SNPAVYRFINRSDPEPLTQRALRLSPEQTQALLEAPEFKGQYPQYAGQPPQLIPSLGM
                     YTGMGEAIGLYRLTDLFRSAGRDIMLKQSRFVSASDLKYKNVILLGSIYVNEWTRKLP
                     AGERFAYTFSATIENRDPRPGEEPLYKPEFDPQTGELRVDYALVTVKPNVSGEHAVMT
                     LAGIYSEGTEAAAEFVTTRNHLAVLAQRLNESGGAAGPPRYYQALLRVGVENGTPTTI
                     TLVALHTLGKPGE"
     gene            6932..7546
                     /locus_tag="VD968_02695"
     CDS             6932..7546
                     /locus_tag="VD968_02695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13331.1"
                     /translation="MHKRLLLAATLAAATTLLSPSAAVSQTQGPPTGAIGDKNLRNEA
                     DPARTRSNELDRIKRDADKPAEKAAPSFPQIKEDFERIQLINSEVLQAAPRPDYKRIA
                     DAAAEIKKRASRLSANLFPPEAEKQSKARKGAEAEEPQELKALLAAVDGAIISFVNNP
                     VFQNTKVVNPEDSARARGDLERVVKLSGKLSKEADRLSKSAVQE"
     gene            complement(7628..9529)
                     /locus_tag="VD968_02700"
     CDS             complement(7628..9529)
                     /locus_tag="VD968_02700"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HYE13332.1"
                     /translation="MTKKITRRDFIICSAAAAAGLGLPDDGSAQGRGARRRSAGGPRL
                     LRSFDARVRPILASMTLEEKIGQMVQAEITGLKDDSDVERYFLGSLLSGGNADPKTGN
                     RLEDWTDMYDGYQSRALRTRLRVPLLYGVDAVHGHNNVIGAVVFPHNIGLGCTRNPRL
                     VERAARVTAEEVRATGINWTFAPCVAVPRDERWGRTYEGFGESPELARQLGAAAVRGF
                     QGEDLSDPLSVLACAKHFAGDGGTLYGTGIPKAPGSSERWPFDRGDVRLTERELRRVH
                     MQGYVSAIRAGVGSIMPSYSSWNGVKCSGSRRLLTEILKQEMGFDGFLISDYDAIDEL
                     PGDYKSQIEQSVNAGMDMFMVPNKYRELYSLLTELVREGRVPRSRIDDAVRRILRVKF
                     AMGLMGAGRSHMADRRLHRSFGSAEHRRVARECVRESVVLLKNEGRALPLSKNLRRVH
                     VAGKSADDIGNQCGGWTIAWQGASGEVTTGGTTILKAIRGAVSRSTRVTYSKDGEGAG
                     GADVCVVVVGEKPYAEMLGDREDLSLDAEDAAAVSNAKRAGVPVVVVLVSGRPLIVNE
                     ALRAADAFLAAWLPGTEGQGVADVLFGDFRPTGKLSFSWPRSMSQIPVNVGDRAYNPL
                     FPYGFGLTF"
     gene            complement(9823..10173)
                     /locus_tag="VD968_02705"
     CDS             complement(9823..10173)
                     /locus_tag="VD968_02705"
                     /inference="COORDINATES: protein motif:HMM:NF012684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor-like protein"
                     /protein_id="HYE13333.1"
                     /translation="MKALPESDEDLLRECEVETFRSGGPGGQHVNKVETGVRLRHTPT
                     GIVVTSREARSQHRNKLNCLRKLREEFARLTRRRAPRVPTRPTRASKQRTLEAKARRS
                     RVKRLRSSKPPADD"
     gene            complement(10170..10529)
                     /locus_tag="VD968_02710"
     CDS             complement(10170..10529)
                     /locus_tag="VD968_02710"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HYE13334.1"
                     /translation="MITVANRIYVRPEYGEAFEARFRERAGLVDRMPGFVSNMVLRPV
                     NEGDPYVVFTVWQSRQDFLNWVRSDAFTKGHAQSGTLPREAFSGPNALEMHEVVQDSA
                     RPDMEPEPRGGPFKMHG"
     gene            complement(10554..11390)
                     /locus_tag="VD968_02715"
     CDS             complement(10554..11390)
                     /locus_tag="VD968_02715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13335.1"
                     /translation="MQSENESQDGRAAEGRAGDLLTLAEEATSPAARADLLREAAEEL
                     ARLRRFVAARAVLGELVALDASRHGARERLEELRRAAVGQESGARFGKVLVFSGHMTD
                     APGRARERFPARKEPAVRGRIEAQLDEWGVGAGDLAISSAARGGDLLFAEACRARGAE
                     VWLFIALPDEEFLEESVRGAEGDWERRYRDLLAREGVRTFWQPERLGPAPEGSCVFAR
                     TNVWMINVARAEADDPRNLYAILVWDEKPTGDGPGGTSDFAARVRRVGGHLAPVVNPT
                     LL"
BASE COUNT         1816 a         3903 c         4052 g         1856 t
ORIGIN      
        1 agcacgccgt cgccgcccgg ctcggccgca gcgcccccgc ccttgtcgcc tgaggcgacg
       61 agatggctcg gcgccgtcgc ctcgcccggc gggctcggcg cgctcggggg gctcgccacc
      121 tggttgacga tggcgcccac ctcctgccga gagctttcga gcgactggcc ctgtagctcg
      181 cgcgccttcg ccaactccct ctcggcctcc tcgcgccgcc ccgacttcag aaggatgcgg
      241 cccagaagga agtgcgcgcg cttgacctgg aagctctgct gcgacacgtc ggtcgtcaac
      301 tcgacggcgc ggcgaagagt cttctcggcg gcggggtcgt tcagctccgc ctgcgactga
      361 ccgaggtaga ggtgcgcgtc gcccgactcg ggcttgagcc gcacggcctc cgaaaggtgg
      421 cggacggctt tggcgtggtc gccgtcgccc gccgcgagga cgccggcgaa gaactgcgcg
      481 tagaagtcct gcgggctctg acgggcttcg cgctcgaagc cttcggcggc ctccttcagc
      541 cgctcgctcc cgccctcgcg gaggatgacg taggcgaggt agaagtgggc gcgcggggcc
      601 ttcgggtcaa cggcgatggc gcggcggaac tgcgcctcgg cctccgcggg gtagcccgtc
      661 tcctgatagg cgcggccgaa gaggacgtgc gcctgcgcgc tgcccccgag cgcggcctgc
      721 atctcctcga agagcagctt ggcgcggtcg agctgcctaa gccgcaggta ggtcatgccg
      781 agcgtgtagg ccgcgtcgag gtcgggctct aacacgacgg cccgctcgag ctccgcgcgg
      841 gcggcggcgt agtcggcctt catgtaaagg agcttgccga ggacatggcg ggcgcgcgcg
      901 ttcttctcgt cgagcccgag cgcggcgcgg gcctcggcga ccgccgcgtc aacttcgagc
      961 aggcgcatgt gcgcgatggc gaggtcggtg cgggcgcgcg cgtcctcgcg cgcggcgagc
     1021 gactccctga gcaggcggac tgccgcctgt agctgccgct cgcggatggc gattgcgccg
     1081 aggcgcgcga gcgctatccc ggcgacggcg cggttctccg cgcccgcgcg cgcgaggtcg
     1141 cccgagagct ggaaagtctc cgcggcgctg aggtggcgcg ccagctcgtc cggcgtgggg
     1201 cgcggccgcg caccgccccc cccgtcctgg cccgccgcgg cgggcggcca gggggcggcg
     1261 acgagcagcg cgaggcagaa gagcttgcgg gcgagcatag tcgtaagtcg tgaaaaagaa
     1321 gctgtcagcc atcagcggtc agcaatcagc aaaagcaaaa ctgaaagttg ataactgaaa
     1381 gctgatagct gacgtctgat tgctgattgc ttcaaacgat gccgaaggga ggcgcggaca
     1441 taataacagg gaggcaaagc tgacagtcaa gctttgcctc cccgcccgcc cggagtcttg
     1501 atcagttgaa ggtcagaaga ccagcttgag cgcgtactgt atctcgcgcg ggccgcgcgt
     1561 cgtgcccgac ctgccgaagc cgccgttgcg tgtgaacccc gtgatgacgc ggttggtcgg
     1621 gctgcaaggg gtgagaccgc agacgacggg gttgccaccg gcgttgacga acatgttgtt
     1681 ctgaaggctg tcggcgcgga actgcgtgtg gttgaaggcg ttgaaaaact cgagcctgaa
     1741 ctgcacgcgg gccgcctcgc cgaacgtccc cttgagccag gagggggtga agttcttgta
     1801 gaacgacatg tccacgttgt tgatgccggg gccgaggcac gagccgcgcg aggcgtcgcc
     1861 cggctcgccg atgaccgccc cgaccagcgt gaaggcttcg gggttgatga tctgctcggg
     1921 gtcaccgccg ctcgggcggc acgggacgcc aggcgcgcgg ttcggccgca cgttggactg
     1981 gctcgtgccc gtcccggcta agccgccctg ctggaggttc gagatgctgc cgttggccac
     2041 gcgcggcgtg atggccgagc cggagcttgc cgtgtagatg gtggcgaact cccagccgcc
     2101 gagggcgctg cggacgaagc cgttcgagcc cttgaaggtc ggcaggtaca tgacggtgtt
     2161 gagcacgaag atgtgcgggc ggtggatgcc ggtgttgccg cggtcgatgc gcccgtcgta
     2221 ggtgtcggtg cgcgtgttga cgctcgcgcc gccgctggag tcgtcgaggg gggcgtcgcc
     2281 gatggagtgc gaccacgtgt atgcggcctg gagctgtgac ctgccgaaga gccgcgtctt
     2341 gaacatggtc tgcatcgagt ggtagtcggc cgtcccggcg cgcgcgaagc cgacgatgaa
     2401 gccgaagttg cgcgcggggc ggaggttgtt gacgcagccg ccgtcggggc agaaggccgc
     2461 cgcgacgcgg ttctgcggca gcacctggtt gacgtcgtag ctgatcagct ggtggagcgc
     2521 gcggttgccc acgtagccca cttcgagcac ggcgtccttc cagagctcct ggtcaacggt
     2581 caggttccat tgccaagtgt taggcagcag cgcgctcggg tcttgcgagc gcgagggcgc
     2641 gccgcccggc gggccggaga cgacgaaggt gccggggccg ttgtcgtcga gcgtgcgctc
     2701 gccgcctatg ccgagggcga atggggcgtt cgccaccatg ccgagggcga tgctgacgcg
     2761 ctcgcgttgg aagaactggc cgaggccggc gcgtatggcc gtcttgccgt tgccgaacgg
     2821 gtcccacgcc agcccgaggc gcggggcgat ggcgttcttg tcgttctcgc gcagcgcgcg
     2881 gttgacgccc tcgcgcggcg tgctctggcc ggggatgccg gcgcaggggt tcgtgcccgg
     2941 cgggacgacg aggccgttac agaagtccga gggcggccgc gtcgggtcgt agaaccgcag
     3001 gtcgaaggag gacatgcggt cttcggcgtc gaacggctcg gggaagtagg agtagcgcgt
     3061 gcccagctcg agcgtcaggt tgggcctgac cttccaggtg tcgccgaagt agagctcgaa
     3121 gttgcggtag cgcgtgagcg ccacgggctg cgtgctggtc tcggcgaagc cgaagcggct
     3181 gccgcgcgtc aggatgtcgg ccaggtagtt gccggagttg ttggcgcagc aggcgcccca
     3241 gaactgcggc gactcggagg ccgccgcccc tagcgagtcc tcgtccttcg aggcgcggtc
     3301 gtagaggaag ccgagcttga aggtctggtt gcccttgacc ttcgagaagt cgtcgcggaa
     3361 cgagtagatg tcgagcgcgt tcttccaggg ggccgccgtc cagaggtcgg ggccgaagtt
     3421 gctgccgtag ggcgcgatgc cgccccagaa ggtcgggtgg gcgcgctggc cctcgttgag
     3481 cttgatgctc tcggggaaga agccggggat gagggtcgag agactctcgt tgatgtcgcc
     3541 gccgagctcg ggcgtgatgt tgatgcggtt ggccgagtag gagaactgca cctcgttgac
     3601 ggcctcgccg ccgatggtcg agctcagttt gatggcggcc tggcgcgagg gctgctgcca
     3661 actgctctcg acgccgggga aggcgtcgtc gccccacagc ccggcgttga agaggatggg
     3721 ggcggggttc tcccagtggt cttgcgtgta gcgcccgaag aggcggtggt tgttgttgac
     3781 cttcaggtct atgcggacgt tctcctcgcg gaagtcaatg ggcgagttcg tggactcgcg
     3841 ccagttgttg cagtcgttcg ggctggggat gttcggctcg gggtagacgt tgacgagcgc
     3901 caggcccgcc gggctgaggc tggcctgcgg gatgacctgt gtgtcggagc cgggccggcc
     3961 gttgccgatg gccgggccgc tgcagcgctg cccgttgggc gcgaagcgcg gctggctgaa
     4021 gtcgccgcgc cgctcggcca gggtcgggac gctgccgaag cgcgtctgcc cgcggatctc
     4081 cttgttgaac tcctgcgagt agaagaagaa gagcctgtcc ttgatgatgg ggccgccgat
     4141 ggagccgccg aagtcgttgc ggcgcagctt gtccttgcgg cccccgacct tgttggcgaa
     4201 gtagtcggcg gcgttcaggg cgtcgttgcg cccgaagtag aagaggctgc cgtggaaggc
     4261 gttctcgccg ccgcgcgtga cgatggagat gatcgcgccc gaagcctgcc cgtactcggg
     4321 gctgaagctg ttgcgaagca tcgtgaactc gccgatggcc tcgatggacg ggtagagcag
     4381 tatggtgcgg ttcgagccgg tgtcgttgtt gttggcgccg tctatgagga agaggttgct
     4441 ctgcgtggtg ttgccgttga cggagaagtc aacgcccgag aagaggccct tgttcttgct
     4501 gtcgaagttc gcggcgggag agacgcccgg ctgtagctgc gtgagctgca cgaagctgcg
     4561 gccgttcagg ggcagctccc tcacctgctc gcccgtgacc acgtcgccca gcgcgcccgt
     4621 ctcctgctga atctgcacgt cgctggcgac gatgttgacc gtctcgccta cctgcccgac
     4681 ctccatcgtc aagtcctgac gggtcgtcgt cgcgacgttg accgtcaggt tctcgacgat
     4741 cgcctccttg aagcccgtct tggtcgccgt gatgcggtag gtgccgctcg gcaggtcggg
     4801 gacggagtag atgccgtcct gattggtgtt gacctcgcgg cggaggttcg tcccgacctg
     4861 cgtgacgacg atggcagtgt cgggcagcgc cgcgccgttc gggtcaacga ccgaccccgt
     4921 tatctgcccc gaagacttct gcgcgctcgc cggggcggcc gcccccgcca ggagcgccag
     4981 cagcaggcag agcgccagcg cgccccgcac gggcgcctga ctccggcacg tagtcgcctc
     5041 actcatgtcc gtatcctcca tcgggacttt ggttcgccgc ggggagcgtc cgacaccctc
     5101 gctctcgata gcacctaaga aagcttggcg gaaaggaaag taaatacaga agctaaggcc
     5161 ggggcgcagt ttaagccacg cgacgcctcg gccgcagtta ccgcgcgtat aacacggtga
     5221 attatctcta ttcgcccgca taacatgccc ggccggggac tgttacatcg gggatgtaac
     5281 ttcgttacat cgccaaaggc ccgcaaaccg ggcctgcggc gcggcctcgg cccgtatgcg
     5341 cggggccgta cggttgttga aaacggttcg cgggtttata atccggcgcg tcagcgaccg
     5401 ggattgccag cctttgtttt gacacacaac aatttcaggg cccgacagag cgcggggggc
     5461 cgctagctcc gccgcgccta aacgcttcgc tcgcccagcg ctctcacaac tgacgctatg
     5521 gagttgcaga aggaacagaa gctcgcgcaa ctcgaaaggg ttctcaacag ccgcgcgctg
     5581 caaaactcgg agagcctgaa ggcgttcctg cgcttcgtcg tcgagaagac ggtcgaggag
     5641 ggcgaggtgc agctcaaaga gtacgtcatc gccacggagg tcttcggccg caacagcgac
     5701 tacgactcgc gcattgactc cgtggtgcgc gtgcaggccg gccgcctgcg cgcgaagctt
     5761 caggagtact acgccaccga aggcaaggcc gaccggatcg ttattgacct cccgaaaggc
     5821 cactaccacc ccgtcttcac gcacgccggc gaccacggcc acgagccggc gacgacggcc
     5881 gcagccgtcc acacctcgga agcgggcgcg aacggccacg cccccgcggg ccacgcgcca
     5941 gatgcgctga cgagcacaga gacggccgcg ccgggcgtcg tgcgccgcgt gccactgcta
     6001 ctcggcttcg tcatcgcgct gctgtgcgtc tcggtcgcgg ggctcgccgt ctggaaccgg
     6061 gagctgcggc ggcaggccga ggccgcgcgc gcgaggccct ccgactccgc ggagttcagg
     6121 gccgtctggg gcgcgatcat gagcgacccc gagccgccgc tcctcgtctt gagcaacccg
     6181 gccgtctatc gcttcataaa caggtcagac cccgagccgc tgacgcagcg cgccctgcgg
     6241 ctgagcccgg agcagacgca ggcgctcctg gaagcccctg agttcaaggg gcagtacccg
     6301 cagtacgcgg gccagccgcc gcagctcatc ccctcgctcg gcatgtacac ggggatgggc
     6361 gaggccatag ggctctaccg cctgactgac ctcttccgct ctgcggggcg cgacataatg
     6421 ctcaagcaga gccgcttcgt cagcgcctcc gacctcaagt acaagaacgt catcctgctc
     6481 ggcagcatct acgtcaacga gtggactcgc aagctccccg cgggcgagcg cttcgcctac
     6541 accttctccg cgaccatcga gaaccgcgac ccgcggccgg gcgaggagcc gctttacaag
     6601 ccggagttcg acccgcagac gggcgagctg agggttgact acgcgctcgt caccgtcaag
     6661 ccgaacgtct cgggcgagca cgccgtgatg acgctcgccg gcatatacag cgaaggcacc
     6721 gaggcagcgg ccgagttcgt caccacgcgc aaccacctcg cagtcctcgc ccagcgcctg
     6781 aacgagtcgg gcggcgcggc cggcccgccc aggtactacc aggcgctcct tagagtcggc
     6841 gtcgagaacg gcacgccgac caccatcacg ctagtcgcgc tgcacactct cggcaagccc
     6901 ggcgagtgag cgcggcgagg aggcgcggcc catgcacaaa cggcttctgc tcgcggcgac
     6961 actcgcggcg gccacaactc ttctgtcccc atcagctgcc gtctcacaga cgcaggggcc
     7021 gcccaccggg gccatcggcg acaagaacct gcgcaacgag gccgacccgg cccgcacccg
     7081 ctcgaacgag ctcgaccgca tcaagcgcga cgccgacaag cccgccgaga aggccgcgcc
     7141 gagcttcccg cagataaagg aagacttcga gcgcatacag ctcatcaaca gcgaagtcct
     7201 acaggccgcc ccgcggcccg actacaagcg catcgccgac gcggccgccg agataaagaa
     7261 gcgcgcctcg cgcctgagcg ccaacctctt cccgcccgag gcggagaagc agtcgaaggc
     7321 caggaagggc gcggaggcgg aagagccgca ggagctcaag gctcttttgg ccgccgtgga
     7381 cggcgccatc atcagcttcg tcaacaaccc cgtcttccag aacacgaagg tcgtcaaccc
     7441 cgaagactcg gcgcgtgcca ggggcgacct cgaaagggta gtcaagctga gcggcaaact
     7501 gagcaaggag gccgacaggc tgagtaagtc cgccgtccag gagtaattgc tgattgcagg
     7561 atgaagggag agggttgacg acagcgctac cgtcgtcaac cctctccgct tttctaatcc
     7621 gcaatcgtca gaacgtcagc ccgaagccgt aagggaagag cgggttgtag gcgcggtcgc
     7681 cgacgttgac ggggatttga gacatcgagc gcggccagga gaatgagagt ttccccgtcg
     7741 gcctgaagtc gccgaagagc acgtcggcga cgccctgccc ctcagtcccc ggaagccacg
     7801 ccgcaaggaa agcgtccgcc gcccgcagcg cctcgttgac tatcagcggc cgccccgaga
     7861 cgagcacgac cacgacgggg acgcccgccc gcttcgcgtt cgagacggcc gccgcgtcct
     7921 cggcgtccag agagaggtct tccctgtcgc ccagcatctc cgcgtagggc ttctcgccca
     7981 ctaccaccac gcacacgtcc gcgccgcccg ccccctcgcc gtccttcgag taggtcacgc
     8041 gcgtcgagcg cgagaccgct ccccgtatgg ccttgaggat cgtcgtgccg ccggtcgtca
     8101 cctcgccgct cgcgccctgc cacgctatcg tccatccgcc gcactggttg cctatgtcgt
     8161 cggcgctctt gccggcgacg tgcacgcgcc tgaggttctt cgagagcggc agcgcccgcc
     8221 cctcgttctt caggagcacc acggactcgc gcacgcactc gcgcgcgacc ctgcggtgct
     8281 cggccgagcc gaaactgcgg tgcagcctcc tgtccgccat gtgcgaacgg cccgcgccca
     8341 tcaaccccat ggcgaacttg acgcgcagta tgcgccgcac ggcgtcgtct atgcgcgacc
     8401 gcgggactcg gccctcgcgc acaagctcag tgagcagcga gtaaagctcc cggtacttgt
     8461 tcggcaccat gaacatgtcc atgccggcgt tgaccgactg ctctatctgg ctcttgtagt
     8521 cgcccggcag ctcgtctatg gcgtcgtagt cggagatgag gaacccgtcg aagcccatct
     8581 cctgcttgag aatctcggtg agcagccggc ggctgcccga gcacttgacg ccgttccagc
     8641 tgctgtaaga aggcatgatc gagccgacgc ccgcgcgtat ggccgagacg tagccctgca
     8701 tgtgcacgcg gcgcagctcg cgctcggtga ggcgcacgtc gccgcggtcg aacggccagc
     8761 gctcgctcga ccccggcgcc ttcgggatgc ccgtgccgta gagagtgccg ccgtcgcccg
     8821 cgaagtgctt ggcgcaggcg aggacgctca aagggtcgga gaggtcttcg ccctggaagc
     8881 cccggacggc ggcggcgccg agctggcgcg caagctcggg cgactcgccg aagccctcat
     8941 acgtcctgcc ccagcgctcg tcgcgcggga cggcgacgca gggcgcgaac gtccagttga
     9001 tgcccgtggc gcgcacctcc tcggccgtga cgcgcgcggc cctctcgacc aggcgcgggt
     9061 tgcgcgtgca gcccaggccg atgttgtgcg ggaagacgac ggcgccgatg acgttgttgt
     9121 ggccgtgcac ggcgtccacg ccgtagagga gcgggacgcg cagccgcgtc ctgagggcgc
     9181 gggactggta gccgtcgtac atgtcagtcc agtcttcgag ccggttgccg gtcttcgggt
     9241 ctgcgttgcc gccgctcagg agcgagccga ggaagtagcg ctcaacgtcg gagtcgtcct
     9301 taaggccggt tatctcggcc tgaaccatct gcccgatctt ctcttcgagc gtcatgctgg
     9361 cgagtatcgg ccgcacgcgc gcgtcgaagg agcgcagcag cctcggcccg cccgccgagc
     9421 ggcggcgcgc gccgcgcccc tgcgcgctcc cgtcgtcggg gaggcctagg cccgcggctg
     9481 ctgcggccga acagattatg aagtcgcggc gcgttatttt tttcgtcata aaaggagccg
     9541 gtcgcctcga ggggtcgaag atttttcgca gagcgtgcag gccgtgaggg agttgcgggc
     9601 gcgcgcgacg cacccgggga gggctggccc tcctccccgt ccgccggcgc agtcgcgcgc
     9661 ctccgcagcg cggccgctcg gccctcgccc tgccgaacag ggtggcccac tccgagggcc
     9721 tgcggcgcct tgaagccaca cttgtacgac ggcgcccgcc tgaaacgtaa gtgacaaacg
     9781 gttaactggg acgtgagaca cgtccgcgcg gggctttcgc gctcagtcgt cggctggagg
     9841 ttttgaagag cgtaggcgct tgacgcgcga gcggcgcgct ttggcttcga gcgtgcgctg
     9901 cttcgaggcg cgcgtcgggc gcgtggggac gcgcggggcg cggcggcggg tgaggcgcgc
     9961 gaactcctcg cgcagcttgc gcaggcagtt caacttgttc ctgtgctggc tgcgcgcctc
    10021 gcgggaggtt acgacaatac ccgtaggcgt gtgccggagc cgcacgcccg tctcgacctt
    10081 gttgacgtgc tggccgccgg ggccgcccga gcggaaggtc tcgacctcgc actcgcgcag
    10141 caagtcttcg tcagactccg gcagcgcctt catccgtgca tcttgaaagg cccgccccgc
    10201 ggctcgggct ccatgtcggg gcgcgcggag tcctgcacga cctcgtgcat ctcgagcgcg
    10261 ttcggccccg agaaagcctc gcgcgggagc gtccccgatt gcgcgtggcc tttggtgaag
    10321 gcgtcggagc gcacccagtt gaggaagtcc tgcctgctct gccagacggt gaagacgacg
    10381 taggggtcgc cctcgttgac gggccggagc accatgttcg agacgaagcc cggcatcctg
    10441 tccacgagcc ccgcgcgctc gcggaagcgc gcctcgaagg cttcgccgta ctcgggcctg
    10501 acgtatatgc ggttcgcgac ggttatcaaa acgcgctcac tctcctttat gaattacagc
    10561 agcgtcgggt tgacgacggg cgcgaggtgg ccgcccactc ggcgcacgcg cgcggcgaag
    10621 tcggacgtgc cgccggggcc gtcgcccgtg ggcttctcgt cccagacgag tatggcgtag
    10681 aggttgcggg ggtcgtcggc ctcggcgcgc gcgacgttta tcatccagac gttcgtgcgc
    10741 gcgaacacgc acgagccttc cggcgccggc ccgagcctct cgggctgcca gaacgtgcgc
    10801 acgccctcgc gcgcgagaag gtcgcggtag cgccgctccc agtcgccctc ggcgccgcgc
    10861 acggactctt ccaggaactc ttcatcgggg agtgcgatga agagccaaac ctcagcgccg
    10921 cgcgcgcggc aggcttcggc aaagagcagg tcgccgccgc gcgccgcgct cgatatggcg
    10981 aggtcgcccg cgcccacgcc ccactcatcc aactgcgcct cgatcctccc gcgcacggcc
    11041 ggctccttgc gcgcggggaa gcgctcccgc gcgcgccccg gcgcgtccgt catgtggccg
    11101 ctgaagacga gaaccttgcc gaagcgcgcg cccgattcct gcccgacggc agcgcgccgc
    11161 aactcttcca ggcgctcgcg agcgccgtgc cgcgacgcgt cgagcgcgac tagctctccg
    11221 agcaccgcgc gcgccgccac gaaacggcgc aggcgtgcga gctcttcggc cgcctcccgc
    11281 aggaggtctg cgcgggccgc gggcgatgtc gcctcctccg cgagcgtgag caggtcgccc
    11341 gcccgccctt cggccgcgcg accgtcctgc gattcatttt cactctgcat ggcttttaat
    11401 cagtttagcg ttgaggcgtg agccgaactt taccacagag tcgagggcag ggctcggaga
    11461 aagtcaatcc ggcccactcc cccgacaggc cggcagaatt gacaccgcac cgcgcacgcc
    11521 ttaatctcct ccgtgtcggc cgaagccggc ggcccgcccg tccccgactc gcaacggccc
    11581 acgccgcgga atttttccgg aacgataatt cccttcacgt aaacacc
//
LOCUS       DASPKR010000093        11522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1821993, whole genome shotgun sequence.
ACCESSION   DASPKR010000093 DASPKR010000000
VERSION     DASPKR010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11522)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11522
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1821993"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..942)
                     /locus_tag="VD968_02720"
     CDS             complement(<1..942)
                     /locus_tag="VD968_02720"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HYE13336.1"
                     /translation="MGSKGAGGGARLLRVLGLTFGLAVTVGNTIGAGILRTPGEVAAQ
                     LPGAWAILGVWAAGAAYALLGANSLAELATMMPRSGGQYVFARRAFGGYAGFVVGWSD
                     WVSTCGSVAAVAIVIGEYAGALLPALSGRAAAVASAVTLGFALLQWRGVRWGSRAQTL
                     TSLMKALAFVAVIAACFALGGGGALGGAEEARAGAGAGAVTLLAVTLALQSVIYTYDG
                     WTGVIYFSEEVADPARDIPRSMFGGVLLVALIYLLFNLALLYVLPVARLAGAELAAGE
                     AASELFGPRGDTLVRALTVVALLSSVNALLLIATRVPF"
     gene            complement(953..2854)
                     /locus_tag="VD968_02725"
     CDS             complement(953..2854)
                     /locus_tag="VD968_02725"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HYE13337.1"
                     /translation="MRQTRARALAVSACLLIIISTGARLSPRAQGGAAGSAARPAPEI
                     SYTVSMPRPHTHLLEVEMWLRYRPGSAPASVELVMPVWTPGSYLVREFARHVQDFDAT
                     AGIAGHMLAWRKTDKSTWRVEKPGLREVRVRYKVYSNERSVRTNELDDRGALWNNAAL
                     LMYPSGHLQAPSTLRVVPFGGWTVATGLPAAPGGEPNLFRAENFDVLYDSPFLAGNLR
                     TISFDVRGVPHRIVLDGEGNYDAERLRRDFKRVVEAAVELMGDVPYRDYTFLISLGPT
                     GGGGLEHLNSTLLTWRRFGFSADADLRDLYKLVAHEFFHLWNVKRIRPDALGPFDYTR
                     ENYTRLLWAAEGLTSYYEDLLVRRAGLMTDKDYLGIAARSIQALQETPGRLEQSLEEA
                     SFDAWIKYYRPDENTVNSAVSYYDKGAIVGMLLDLEIRRRSKGSRSLDDVMRYLYEEF
                     AKKNRNYTPEDFRRAAERAAGSGLEEFFRRYVAGREELDYDPALAAVGLRLDTTGAGE
                     PAGRAAAGAFLGATLAEEGGRLLVRNVPAGTPAYEQGINADDQIVAVDGYRATRAFLD
                     ARLRDKRPGDTLALTVFREDELRTFTVKLGSRADAAYRIVPVAEPTEEQRRNYQSWLA
                     APFPSQGRR"
     gene            3053..3523
                     /gene="trxA"
                     /locus_tag="VD968_02730"
     CDS             3053..3523
                     /gene="trxA"
                     /locus_tag="VD968_02730"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HYE13338.1"
                     /translation="MAISVCGRCGAKNRVDERAAAAGKLPVCGRCGAKLGAPAPAAEP
                     LFDTSRPVKVTDQSFERDVLEASNSLPVMLDCWAEWCGPCRMVAPVLDQLAAESAGRY
                     LIAKLDVDENPRTAAALRVNSIPTLFIYRGGQPVERIVGAQPKHVLAARLSAHL"
     gene            complement(3538..6324)
                     /locus_tag="VD968_02735"
     CDS             complement(3538..6324)
                     /locus_tag="VD968_02735"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13339.1"
                     /translation="MRTALLCFAFALTILSTAGSAEAGRQKQTPAAKPKAKATAPAAK
                     KKPGAGAQAAKAKAPAAKPKASPAAKPTGEEALKAELAEIVKLASAAERVERLKSFLK
                     ANEKSPLRPKAQELLTSARAALGDERLRSSDRAGGIELFRAAVLEAPAEMPDKLFFEV
                     VSQLPANLYVLGEREAAFELARAVEERASSKAPRLLSVAAFYLGAERPEEAERVARQA
                     VALQPDMAAAHQALGAAYRFSLRLDEAAAEYARALELDPKSAAARRSLADLKRATGKA
                     EEALALYREQLAAEPQDSGARAGLVLSLFDAGRRAEAERELEAALMEQASNLPLLVGA
                     SYWYAAHGEAARAIELAERAVALEPRYRWVWTRVALARALLAARRPLDAERELRRARS
                     LGSFPTLDYELAVALAAAGLYEEAAEELSRSFRVENGQIVTRLAGRVEARGADFEELL
                     APERRAGLFQFKGAGKAAEARTLKGLLAFHEATRAAAADGALDDSAAEAAREFASGDD
                     AMRAYRNLYVADRLAQRSPGHKLVLERAEAAIGGVDAALSTQVAPIALFAGTEEMRML
                     RQRVVETGEPLNYVGVQPEVLSRVMRGRIEELAGWALYNQGRTAEAVVRLRRAVSVLP
                     EGTIYWRSAEWRLGAALEASGSAREALAAYVKSYRARPDETRRSVIEALYKRLNNGST
                     SGLEELLDPSLAAPATASARPTPRPQPTPEVPEGWTPIETKRSDATGSASAESSPAKS
                     GEPAATPSETTKATPTQPEASPSPSPSPPPTPTPSPSPEAPPAPAPSPAAAVGPSPTP
                     AQTEAATPTPSPEQPKPTPSPGPQEATRKSAPPAGACTLALSEPSVAVKANGGRATVT
                     LTAANHTGAAPPRIQPSTPNWADIIVLAEPRTASDDKASVRFTVMSTSGKAGPFVVNF
                     ASPCGKQQLAVNVQ"
     gene            complement(6409..8184)
                     /locus_tag="VD968_02740"
     CDS             complement(6409..8184)
                     /locus_tag="VD968_02740"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HYE13340.1"
                     /translation="MAQTHSPRRPRAKAYLLLAALLLALAPAGGAMQRRSARPRPEAR
                     PAAPEQQKRARPRLVLLIAVDQFRYDYLERFGDLFVAGGLRRLLRDGASWTNANYDHV
                     PTETAPGHATMMTGAWPAETGIVANDWYERNDKGDGGRRVNNVEDPDAKLLGGGGEKE
                     RAATPRRLLASTLGDELRLATNHRSKVIGVSLKDRSAILPAGRHASAAYWYSADTGRM
                     VSTDYYFARMPAWAEAFNAARPAEKYLGRAWERLLPNEAEYLRRAGPDDPEWEWKPAK
                     ADRSSSLFPHMLPAAAGDTYFEQLQSTPFASDLLVAFAKEAIASESLGADDDTDVLTV
                     SFSSNDFVGHRFGPYSQEVMDITLRTDGQVAELLDFVDRRVGLANTLVAFTADHGVAP
                     VPEHAAGLNLPGRRVSQSDVRARVKEGLNERFRRAGDTRDRGDDYFLEYTAKNGNVYF
                     NLEALRRDGVPREEAERAACDGALRVRGVARCFTRTQLERGAVSPADPVARRALHGFN
                     PRRSGDIVLVMEAFNLVVTYTADHFAPYSYDTHVPVIIMGAGVAPGRYANPATPADIA
                     PTLARLVGVQAPSNAVGRVLLEAIR"
     gene            8258..8839
                     /locus_tag="VD968_02745"
     CDS             8258..8839
                     /locus_tag="VD968_02745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13341.1"
                     /translation="MITSPREEARGFTGSGATILSGFEEEYDRLVAEAQERASARGRG
                     DVADYLTLRAANDRLRSGAVERLLETFTGLAGELNRSGAALQLSRTEAHRFRVGASTM
                     VGTRLVLRRGVRSLTIEAGWPRSPRDGVVRGGGLASARLAHFGDRASDEELLLVASAG
                     GEEPRWLVLDDKAGARTEMAEDRARRHVAKLLA"
     gene            9177..9836
                     /locus_tag="VD968_02750"
     CDS             9177..9836
                     /locus_tag="VD968_02750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13342.1"
                     /translation="MTDRRFTVLTFAALMLGSLLVPAAANAQGTIWDRVRERARERRE
                     EEVRRGRRDDDYYRRGRGGRMSDYERRALRDVARRLESRSRDLERDVDYLLDHSRYDG
                     SRREDRINSEVQGFRRAADRFQNVAGDSQDLYRSRDDAQRLFTEAAQVDRLLSRIRLD
                     SRTFNDWAQIRADLRTVADIYGIRFRDFDDRNYRRDDDFYRRRDRDRHRRRGNNDWRW
                     E"
     gene            complement(10104..11132)
                     /locus_tag="VD968_02755"
     CDS             complement(10104..11132)
                     /locus_tag="VD968_02755"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE13343.1"
                     /translation="MDETRARVFLAEGRAAEAEKLVRSAVQVLERGGEQSLLAEALTT
                     KGLALARLGREDEAREVLGRAVEVAESAGDVEGAGQAALTLMEELGSKLAPHELSDTF
                     ERAYGLLAGSRHAGNKDRLLACARRVLYSAGVLQVPATWEGFSFMEAVRRYEARLIEA
                     ALTDADGVVTRAAQLLGLSRQSLDSMLRRRHNRLVTLRAPTEPRRSSLMFREGDCPDT
                     RLVTILHAEDDEPVADAVRETLEAEGWQVEVCADGLAALERLAGSERYDLLIFDNQLP
                     GISGIELTRQARSMAHRQQTPIIVLTASRVEAEARRAGANAFLRKPDDLPYIAETVAR
                     LLARKIKQ"
BASE COUNT         1643 a         4068 c         4043 g         1768 t
ORIGIN      
        1 gaacggcacg cgcgtcgcta tcagcaggag cgcgttgacg ctgctcagca gcgcgacgac
       61 cgtcagcgcg cgcacgagtg tgtcgccgcg cggcccgaac agctcggagg cggcctcgcc
      121 cgccgcaagc tcagcgcccg ccaggcgcgc gacgggcagg acgtagagca gagcgaggtt
      181 gaacaggagg tatatgaggg cgaccaggag tacgccgccg aacatcgagc gcgggatgtc
      241 gcgcgccggg tcggcgacct cctcggagaa atatatgacg cccgtccagc cgtcgtatgt
      301 gtatatgacc gattgcagcg cgagcgtcac cgcgagcagc gtcacggcgc ccgcgcccgc
      361 gccggcccgc gcctcttccg ctccgccgag cgcgccgccc ccgccgaggg cgaagcacgc
      421 cgcgatgacg gcgacgaagg cgagcgcctt catcaggctc gtcagcgtct gcgcgcggct
      481 gccccagcgc acgccgcgcc actgcaagag cgcgaagccg agcgtcacgg ccgaggcgac
      541 cgccgcggcg cggcccgaga gcgcgggcag gagcgcgcca gcgtactcgc ctatcacgat
      601 ggcgacggcc gcgaccgacc cgcacgtcga gacccaatcg ctccagccga cgacgaagcc
      661 cgcgtagccg ccgaacgccc ggcgcgcgaa gacgtactgc ccgcccgagc gcggcatcat
      721 cgtcgcaagc tcggccagcg agttcgcgcc cagcagcgcg taggccgcgc ccgcggccca
      781 cacgccgagt atcgcccacg cgccgggcag ttgcgccgcg acctcgccgg gcgtgcggag
      841 gatgccggcg ccgattgtgt tgcccaccgt aactgccagc ccgaacgtga ggcccagcac
      901 gcgcagcagc cgcgccccgc cgcccgcgcc ttttgagccc atccttctct cctcagcgcc
      961 tgccctgcga ggggaagggc gcggcgagcc aggactggta gttgcgccgc tgctcttcgg
     1021 tcggctccgc gacggggacg atgcggtacg cggcgtctgc gcgcgagccg agcttgacgg
     1081 tgaaggtgcg aagctcgtcc tcgcggaaga ccgtgagcgc gagcgtgtcg cccggtcgct
     1141 tgtcgcggag tcgcgcgtcg aggaaggcgc gcgtggcgcg gtagccgtca accgccacaa
     1201 tctggtcgtc ggcgtttatg ccctgctcgt atgctggcgt ccccgcgggg acgttgcgga
     1261 ctagaagtcg cccgccctcc tcggcgagcg tcgcgccgag gaaggccccg gcggccgcgc
     1321 gcccggccgg ctcgcccgcg cccgtcgtgt ctaaacgcag gccgacggcg gcgagcgccg
     1381 ggtcgtagtc gagctcttcg cgccctgcga cgtagcggcg gaagaactct tcgagcccgg
     1441 agccggccgc gcgctcggcc gcgcgacgga agtcctcggg cgtgtagttg cggttcttct
     1501 tcgcgaactc ctcgtagagg taacgcatca cgtcgtcgag cgagcgcgag cccttcgagc
     1561 ggcggcggat ttcgaggtcg agcagcatac cgactatcgc gcctttgtcg tagtaggaga
     1621 cggccgagtt cacggtgttc tcgtcgggcc ggtaatactt tatccacgcg tcgaagctcg
     1681 cctcttcgag gctctgctca agccttcccg gcgtctcctg caaagcctga atggatcgcg
     1741 ccgcgatgcc gagataatcc ttgtccgtca tcagcccggc gcggcgcacg agcaggtctt
     1801 cgtagtagct cgtcagcccc tctgcggccc aaagcagccg cgtgtagttc tcgcgcgtgt
     1861 agtcgaaggg gccgagcgcg tccgggcgta tgcgcttgac gttccagagg tggaagaact
     1921 cgtgcgcgac gagcttgtaa aggtcccgga ggtctgcatc ggcggagaag ccgaagcggc
     1981 gccatgtgag cagcgtcgag ttcaggtgct ccaggccgcc gccgccagtc ggcccgagcg
     2041 agatgaggaa cgtgtagtcg cggtaaggca cgtcgcccat cagctcgacc gcggcctcaa
     2101 cgacgcgctt gaagtcgcgg cgcaggcgct cggcgtcgta gttgccctca ccgtccaaaa
     2161 ctatccggtg cgggacgccg cgcacgtcga agctgatggt gcggaggttg ccggcgagga
     2221 agggcgagtc gtagagcacg tcgaagttct ccgcgcggaa caggttcggc tcgccgcccg
     2281 gcgccgccgg gagccccgtc gccaccgtcc agccgccgaa ggggacgacc ctgagcgtcg
     2341 agggcgcctg gaggtggccc gacgggtaca tcagaagcgc cgcgttgttc cagagtgcgc
     2401 cgcggtcgtc cagctcgttc gtgcgcaccg agcgctcgtt ggaatagacc ttgtagcgca
     2461 cgcgcacttc gcgcaagccc ggcttctcga cgcgccacgt gctcttgtcg gtctttcgcc
     2521 acgcgagcat gtggccggcg atgccggcgg tcgcatcgaa gtcctgcacg tggcgggcga
     2581 actcgcgcac gaggtaggag ccgggcgtcc agacgggcat gacgagctcg accgacgcgg
     2641 gcgccgagcc cggacggtag cgcagccaca tctcgacttc gagcaggtgc gtgtgcggtc
     2701 gcggcatcga gaccgtgtag gagatttccg gggccggccg cgccgccgag cccgcggcgc
     2761 cgccctgcgc tcgcggcgag aggcgtgcgc ccgtcgagat gatgattagc aggcacgccg
     2821 agacggccag agcccgcgcg cgcgtttgac gcatcgttag cttcccttcg accgaaatgt
     2881 tttcgcggga gagtctgcct gaatcttaca acgaagcccg cgcgccgggc gaaccgggcg
     2941 ggcgccgcgg ctgcttcttc cgtcccggcc cagagttgtg tcaaactcag tgcatggcgc
     3001 ggcggcccac ggcttattgc cctcaggcac gccgttcggg agggttcgag cgatggcgat
     3061 tagcgtgtgc ggaaggtgcg gggcgaagaa ccgcgtggac gagagggcgg ccgcggcggg
     3121 caagctcccc gtctgcggca ggtgcggggc gaagctcggg gcgccggcgc cggccgccga
     3181 gccgctcttc gacacgagcc gccccgtcaa ggtcacagac cagagcttcg agcgcgacgt
     3241 tctggaagcc tcgaacagcc tgcccgtcat gctcgactgc tgggccgagt ggtgcggccc
     3301 gtgcaggatg gtcgcgcccg tcttagacca gctcgccgcg gagtcggccg gccgctacct
     3361 catcgccaag ctcgacgttg acgagaaccc gcgcacggcc gcggccctcc gagtcaatag
     3421 catccccacg ctcttcatct accgcggcgg ccagccggtc gagcgcatcg tcggagcgca
     3481 gcccaagcac gtcctcgccg cccgcctctc cgcacacctc tgaaatgaaa gaccatccta
     3541 ctgcacgttg acggcgagct gctgcttgcc gcatggcgag gcgaagttga cgacgaaggg
     3601 gccggccttg ccgctggtgg acatgacggt gaagcgcacg gaggctttgt cgtcggacgc
     3661 cgtgcgcggc tcggcgagga cgatgatgtc ggcccaattc ggcgtcgagg gctgtatgcg
     3721 cgggggcgcc gcgcccgtgt ggttcgcggc cgtgagcgtg acggttgccc tgccgccgtt
     3781 cgccttgacg gcgacggaag gctcgctgag cgcgagcgtg caggcgcccg cgggaggcgc
     3841 agatttgcgc gtagcctcct gcggccccgg cgaaggggtc ggcttcggct gctcgggcga
     3901 gggggtaggc gtcgcggctt ccgtctgggc cggagtgggc gaaggcccta cggccgcggc
     3961 cgggctcggc gcgggcgcag gcggcgcttc gggcgaaggc gaaggcgtgg gagtcggcgg
     4021 cggtgaaggt gaaggcgaag gcgacgcctc cggttgggtg ggcgtcgcct tcgtcgtctc
     4081 tgacggcgtc gccgcgggct cgcccgactt cgcaggtgac gactctgctg atgcggagcc
     4141 cgtagcgtcg ctcctcttcg tctcgatggg cgtccagccc tccggcactt cgggcgtggg
     4201 ctgcgggcgc ggcgtggggc gcgcgctcgc ggtcgccggg gccgcgagcg aagggtcgag
     4261 cagctcttcg agcccgctcg tcgagccgtt gttcagcctc ttgtagagcg cttcgatgac
     4321 ggagcggcgc gtctcgtcgg ggcgcgcccg gtagctcttg acgtatgcgg ccagcgcctc
     4381 gcgcgcgctc ccgctcgctt cgagggccgc gcccagtcgc cactcggcgc tgcgccagta
     4441 gatcgtgcct tcgggcagca cgctcaccgc gcgccgcaag cgcacgacgg cctcggccgt
     4501 gcggccctgg ttgtacaggg cccagccggc aagctcctct atgcggccgc gcatcacgcg
     4561 cgaaagcacc tcgggctgca cgccgacgta gttgagcggc tcgcccgtct cgacgaccct
     4621 ctgccgcagc atgcgcatct cttccgtgcc tgcgaagagc gcgatgggcg cgacctgcgt
     4681 cgagagcgcc gcgtccacgc cgcctatcgc ggcctccgcg cgctcgagga cgagcttgtg
     4741 gcccggcgag cgctgcgcga ggcggtcggc gacgtagagg ttccggtagg cgcgcatcgc
     4801 gtcgtcgccc gacgcgaact cgcgcgcggc ctcggccgcc gagtcgtcga gcgcgccgtc
     4861 cgcggccgcg gcgcgcgtcg cctcgtggaa ggcgagcagg cccttgagag tgcgcgcctc
     4921 ggcggccttg cccgcgccct tgaactggaa gaggccggcc cggcgctcgg gcgcgagcag
     4981 ctcctcgaag tccgcgccgc gcgcctcgac gcggcccgca aggcgcgtga ctatctggcc
     5041 gttctccact ctgaacgagc gcgaaagctc ctcggccgcc tcctcgtaaa gccccgcggc
     5101 ggcgagcgcg acggccagct cgtagtcgag cgtcgggaag ctgcccagag agcgcgcccg
     5161 cctcagctca cgctcggcgt cgagcgggcg cctggccgcg agcagggcgc gcgcgagcgc
     5221 cacgcgcgtc cagacccagc ggtagcgcgg ctcgagcgcg acggcgcgct cggcgagctc
     5281 gattgcgcgt gccgcctcgc cgtgcgccgc gtaccagtag gacgcgccta ccaggagcgg
     5341 caggttgctc gcctgctcca ttagcgcggc ttccagttcg cgctcggcct cggcgcggcg
     5401 gcccgcgtcg aagagcgaga gcacgagccc ggcgcgcgcg cccgagtcct gcggctcagc
     5461 ggcgagctgc tcgcggtaga gcgcgagcgc ctcctcggcc ttgcccgtcg cgcgcttgag
     5521 gtccgcgagg ctgcggcgcg cggctgccga cttcgggtcg agctcgagcg cgcgggcgta
     5581 ctcggccgcg gcctcgtcca ggcggagcga gaatcggtac gcggcgccga gcgcctggtg
     5641 agcggccgcc atgtccggct gcaaggcgac ggcctgccgc gcgacgcgct cggcctcctc
     5701 gggccgctcg gcgccgaggt agaaggccgc gacgctcagg agccgcggcg ccttcgagct
     5761 tgcgcgctcc tcgacggcgc gcgcaagctc gaaggcggcc tcgcgctcgc cgagcacgta
     5821 gaggttcgcg gggagctgcg agacgacctc gaagaagagc ttgtcgggca tttctgccgg
     5881 cgcctccaag acggccgcgc ggaacagctc gatgccgccc gcacggtcgc tggagcgcag
     5941 gcgctcgtcg ccgagcgcag cccgcgcgct cgtcaggagc tcctgcgctt tgggcctgag
     6001 cggcgacttt tcgttggcct tcaggaagct tttgagcctc tcgacgcgct cggccgcaga
     6061 cgcgagcttc acgatctcgg ccagctccgc cttcagcgcc tcctcgcccg tcggcttagc
     6121 cgcggggctc gccttcggct tggcggccgg cgccttcgcc ttcgcggcct gagccccggc
     6181 gccgggcttc ttcttggcgg cgggcgcggt cgccttcgcc ttcggcttcg cggcgggcgt
     6241 ctgcttctgc cggcccgcct cggcggagcc ggccgtcgaa aggatggtga gggcgaaagc
     6301 gaagcaaagc agggctgttc tcataaatct ttggccgtcg aatgaaagta tctacccgcg
     6361 cgtcgggacg gcgacaatga tgcggccgcc ctcaggcgta tggcaagctc acctgatggc
     6421 ttcgaggagg acgcggccga cggcgttgct gggcgcctgc acgccgacga ggcgcgcgag
     6481 cgtgggcgct atgtcggcgg gcgtggccgg gttcgcgtac cggcctggcg cgacgcccgc
     6541 gcccataatg attacaggga catgcgtgtc gtaggagtag ggcgcgaagt ggtcggccgt
     6601 gtaggtgacg accaggttga acgcctccat gacgagcacg atgtcgccgc tgcggcgcgg
     6661 gttgaagccg tgcagcgccc ggcgcgcgac cgggtcggcc ggcgagaccg cgccgcgctc
     6721 aagctgcgtg cgcgtgaagc agcgcgccac gcctcgcacc ctcagcgcgc cgtcgcacgc
     6781 ggcgcgctcg gcctcctcgc gcggcacgcc gtcgcggcgg agcgcctcaa ggttgaaata
     6841 gacgttcccg ttcttcgccg tgtactcgag gaagtagtcg tcgccgcggt cgcgcgtgtc
     6901 acccgcgcgt cggaagcgct cgttgagccc ctccttcact ctggcgcgca cgtcgctctg
     6961 gctcacgcgg cggccgggca ggttcagccc cgcggcgtgc tccggcacgg gggcgacgcc
     7021 gtggtcggcc gtgaaggcga ccagggtgtt ggctagcccg acgcggcggt caacgaagtc
     7081 gagcagctcg gccacctgcc cgtccgtgcg cagcgtgatg tccatgacct cctggctgta
     7141 aggcccgaag cggtggccga cgaagtcgtt cgaggagaag ctgacggtga gcacgtccgt
     7201 gtcgtcgtcg gcgcccagcg actcgctggc tatcgcctct ttggcgaagg ccacgagcag
     7261 gtcgctcgcg aacggcgtgc tctgcaactg ctcgaagtaa gtgtcgcccg ccgcggccgg
     7321 cagcatgtgc gggaagaggc ttgagcttcg gtcggcctta gcgggcttcc actcccactc
     7381 ggggtcgtcc ggccccgcgc gtcgcaggta ctccgcctcg ttcggcagaa gcctttccca
     7441 ggcgcgccct agatacttct cggcggggcg cgcggcgttg aacgcctcgg cccacgcggg
     7501 catgcgcgcg aagtagtagt cggtcgagac catccggccc gtatcggcgc tgtaccagta
     7561 ggcggccgag gcgtggcggc cggcgggcag tatggcgctc cggtctttga gcgagacgcc
     7621 tatgactttc gagcggtggt tggtggcgag ccgcagctcg tcgccgagcg tggaggccag
     7681 caggcgccgc ggcgtggcgg cgcgctcctt ctcgccgccg ccgccgagta gcttcgcgtc
     7741 ggggtcttcg acgttgttga cgcgccggcc gccgtcgcct ttgtcgtttc gctcgtacca
     7801 gtcgttggcg acgatgccgg tctccgcggg ccacgcgccc gtcatcatcg tggcgtggcc
     7861 gggcgcggtt tccgtgggga cgtggtcgta gttggcgtta gtccaagagg cgccgtcgcg
     7921 gagcagtcgc cggaggccgc ccgcgacgaa gaggtcgccg aagcgctcaa gataatcata
     7981 ccggaactgg tcaaccgcga tgaggagcac gagccgcggc cgcgctctct tctgctgttc
     8041 aggggccgcc ggcctcgcct ccgggcgcgg ccgcgcgctg cggcgctgca tggcgccgcc
     8101 ggccggcgct agcgcgagca ggagcgcggc gagcaggagg taagccttag cgcgcgggcg
     8161 gcgcgggctg tgcgtctgtg ccatcgtcgt tttcttcata aggcgcggcg gaagcgttcg
     8221 cggtcgggct catgctgttc aggacttttg tggcggcatg ataacatcgc cgcgcgagga
     8281 ggcgcgaggc tttacaggtt cgggggcgac gattttgagc ggcttcgagg aagagtacga
     8341 caggcttgtg gccgaggcgc aggagcgcgc gagcgcgcgc gggcgcggcg acgtggccga
     8401 ctacctcacg ctgcgcgccg ccaacgaccg ccttcgctcg ggcgcggtcg agcggcttct
     8461 tgagaccttc acgggcctcg caggcgagct taaccgctct ggcgccgcgc tacagctctc
     8521 gcgcacggag gcgcaccgct tccgcgtcgg cgcctctacg atggtcggca cgcggctcgt
     8581 gctgcgccgc ggggtgcgct cgctcaccat cgaggccggc tggccgcgct cgccccgcga
     8641 cggcgtcgtg cgcggcgggg gcctggcgag cgcgcgcctc gcgcacttcg gcgaccgcgc
     8701 ctccgacgaa gagctcctgc tcgtggcctc cgcgggcggc gaggagcccc gctggcttgt
     8761 cctcgacgac aaggccggcg cccgcacgga gatggccgaa gaccgcgccc gccgccacgt
     8821 cgctaagctg ctggcctaag tcgtctcacc ttcagtaacc aattatccgt tttaagcccg
     8881 ggccctcacg atttgcggcg cggcctgcac gttttgggac ggcgcgccgc gcacggtagg
     8941 gtttaactcc ttccgcccct cctgcgcgcg ctcgtcgctt tcggcgcgtt ttcccgaaga
     9001 gttccgccgc ccgcgcccaa gcggcacagg gcttgcccga ccgcctgtcg gttatttgag
     9061 ccgctcgcaa tgatccccag accgacgcgg cgacgataga cgggccgaac cgcccgcacg
     9121 ccctcccgca agtgtccccg gcggtcgcct ttgaaaacac gaaggagaca agcaagatga
     9181 ctgaccgacg tttcaccgtt cttacattcg ccgccctcat gctcggctcg ctgctagtgc
     9241 ccgcggcggc caacgcgcaa ggcaccatct gggatcgcgt gcgcgagcgg gcgcgcgagc
     9301 ggcgtgagga ggaggttcgg cgcgggcgcc gcgacgacga ctactaccgg cgcggccgcg
     9361 gcgggcgcat gagcgactac gagcggcggg cgctgcgcga cgttgcgcgc cgcctcgaga
     9421 gccgcagccg cgacctcgag cgcgacgttg actacctgct cgaccacagc cgctacgacg
     9481 gctcgcggcg cgaagaccgc atcaactccg aagtgcaggg cttccgccgc gccgccgacc
     9541 gcttccagaa cgtagccggc gacagccagg acctctaccg cagccgcgac gatgcccagc
     9601 gactcttcac ggaggccgcg caggttgacc gactgctgag ccgcatacgg ctggactcgc
     9661 gcaccttcaa cgactgggcg cagatacgcg cggacctccg caccgtcgcc gacatttacg
     9721 gcatacgctt ccgcgacttc gacgaccgca actaccgccg cgacgacgac ttctaccgcc
     9781 gccgcgaccg ggaccgccac cgccgtcgcg gcaacaatga ctggcggtgg gagtaagcag
     9841 gctctaaacc gttaactaag acgccgggcg cgaccgaagc cccggccgag acaaaagtga
     9901 atggcgcggc accttgagag ccgcgccatt catattattg cgcttgacga aagccacggg
     9961 agcgggcgcg cccctcggat gtggcggggc cgccgcgcgc ccacccacgc ttcggcggcc
    10021 ccgcggcgcg cccggttcgc ctccggcggg cgcgcctcgc ggggcgcacg cgcaaagagc
    10081 gacgcgcgcg ccccgctctt ccgtcactgc ttgatcttcc gcgcgagcag gcgcgcgacc
    10141 gtctcggcta tgtaaggcag gtcgtcgggc tttctgagga aggcgttcgc cccggcccgt
    10201 cgcgcctccg cctcgacacg gctcgccgtg agcacgatta tcggcgtctg ctgtctgtgc
    10261 gccatcgacc gcgcctgtcg ggtaagctca atgccgctta tgcccgggag ctggttgtcg
    10321 aagatgagta ggtcgtagcg ctccgagcca gcgaggcgct cgagcgccgc gagcccgtcg
    10381 gcgcagacct cgacctgcca gccttcggcc tcgagcgtct cgcggactgc gtcggccact
    10441 ggctcgtcgt cctcggcgtg aagaatcgtg acgaggcgcg tgtcggggca gtcgccctcg
    10501 cggaacatga ggctgctgcg gcgcggctcg gtcggggcgc gcagcgtcac gaggcggttg
    10561 tgcctccggc gcagcatcga gtcgaggctc tgccgcgaga gccctagcaa ctgcgccgcg
    10621 cgcgtaacca cgccgtccgc gtccgtgagc gcagcctcta tcagccgtgc ctcgtagcgc
    10681 cgcactgcct ccatgaaaga gaagccctcc caggtcgcag gcacctgcaa gacgcctgcg
    10741 gagtagagca cacgccgcgc gcacgcgagc agccggtctt tgttgcccgc gtgccttgag
    10801 cccgctagca gcccgtaggc gcgctcgaac gtgtcgctca gttcgtgcgg ggcgagcttc
    10861 gagcccaact cttccatcaa cgtcagcgcc gcctgccccg ccccctccac gtcgcccgcg
    10921 ctctccgcca cctcgacggc ccgccccaga acctcccgcg cttcgtcttc tcggcctagc
    10981 cgcgccagcg ccagcccctt tgtcgtcaga gcctcagcca gcagcgactg ctccccgccc
    11041 ctctccaaca cctgcaccgc cgaccgcacc agcttctccg cctcggccgc cctcccctcc
    11101 gccagaaaca ccctcgcccg agtctcgtcc acctgcgcta agtggacgtt atcacccaag
    11161 ctcgttacaa gagcctgcgc acgatcaaga tgttcgtgcg cctcatcgaa cctgccaatt
    11221 gtactgaaaa ggaacccgag attattttcg acgcaacctt gatagcgtct atgccctgcc
    11281 tgctcgaaat ggtagctggc cgccgcatac tcaattagcg cccgatctct gtaatcagca
    11341 cggccttcaa tttgagcctg atttactaac aaattcgcga acccgttgtg gaatcttcct
    11401 ttcatcgcat gattgcggct cttttcaaat agaggcgaag cttccatata aagtctcaac
    11461 gcatcgttat ggcggcctgc tgacttttca acgatggcgc tacgaagcaa cactaatgct
    11521 tt
//
LOCUS       DASPKR010000094         2611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_10365, whole genome shotgun sequence.
ACCESSION   DASPKR010000094 DASPKR010000000
VERSION     DASPKR010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10365"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1202)
                     /locus_tag="VD968_02760"
     CDS             complement(<1..1202)
                     /locus_tag="VD968_02760"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HYE13344.1"
                     /translation="MLQCPKCGRTFDAGETVCPDDAAPLRADDTLRSHAPVDPLLGRV
                     LDDKYRLDARLGEGGMGAVYRATHLLIERPVAVKVLSTRLVTDEAARERFRREALAAG
                     RIQHSNAVAVTDFGETSDGLVYIVMELLEGRSLRDVLAREAPLDPARAVSLMLQTSAA
                     VAAAHEAGVIHRDLKPGNIFVVQRPSAPYLVKVLDFGIAKLGAGAAGDAAFHDTLTGT
                     GVMIGTPRYMSPEQCDGATLTPASDVYSLGVILYEMLTGQTPFTGATPLALALKHSSE
                     TPRPPRELVQTIPPALESLVLRALAKAPEERQRDAGELRRELYEVAERLGLEHSAGFS
                     APTIETLRDAGTETPSGRLVIDIERMRRSRAASASTTEAAPTGTDENEAKRTAGNASP
                     RAAEVERAA"
     gene            complement(1325..1498)
                     /locus_tag="VD968_02765"
     CDS             complement(1325..1498)
                     /locus_tag="VD968_02765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13345.1"
                     /translation="MPEYEGEGTITGEQSPVKIEESPNMKVHGEPPPGSPMPGAENPD
                     SDTVNNEINPNTE"
     gene            complement(1522..>2611)
                     /locus_tag="VD968_02770"
     CDS             complement(1522..>2611)
                     /locus_tag="VD968_02770"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF003792.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HYE13346.1"
                     /translation="AVDILLCRSERPLPRELRSKIALFCNVKEHAVIAAEDVGNIYEV
                     PLAFHEQGLDNLIVTSLGLEERAAQSELTRWRELVATIRDPAGHARIGIVGKYVELED
                     SYKSLREALTHGGVANNLRVDVTWVESESLMGDDFEDRLRDFDAILVPGGFGKRGVAG
                     MIRAISYARRTQTPYFGICLGMQTAVIEYARNVCGLVGADSTEFDPETPYPVIFKLRD
                     LANVEDLGGTMRLGAWECLLAERSLAREVYGGAPQISERHRHRYEFNPEFREQLERAG
                     LVFSGVSVDGRFVEMVELPRDAHPWFLGCQFHPEYKSKPLAPHPLFASFVRAAYRNRM
                     RDEASAVVEAEETEPAAAERAQVLAGDD"
BASE COUNT          392 a          887 c          905 g          427 t
ORIGIN      
        1 gcggccctct caacttccgc ggcgcggggc gaagcgttgc cggccgtgcg cttcgcctcg
       61 ttctcgtccg ttcccgtggg ggccgcttcc gtcgtgctcg cggaggcggc gcggctgcgg
      121 cgcatacgct cgatgtctat aacgagcctg cccgacggag tctcagtccc ggcgtcgcgg
      181 agcgtctcga tggtgggagc gctgaagcca gcagagtgct cgaggcccag acgctccgcc
      241 acctcgtaaa gctcgcggcg gagctcgccc gcgtcccgct gccgctcctc cggcgctttg
      301 gccagcgcgc ggagcaccag cgattcgagc gcgggcggta tcgtctgcac aagctcgcgc
      361 ggggggcggg gcgtctccga tgagtgcttg agcgcgagag ccagcggggt cgcgcccgtg
      421 aacggcgtct gccccgtcag catctcgtag aggatcacgc cgagcgagta aacgtccgag
      481 gctggcgtca gcgtcgcccc gtcgcactgc tccggcgaca tgtatcgcgg cgtgcctatc
      541 atcacgcccg tccccgtcag cgtgtcgtgg aaggcggcgt cgcccgcggc gcccgcgccc
      601 agcttcgcga tgccgaagtc gagcaccttg acgaggtagg gcgcgctcgg ccgctgcacg
      661 acgaagatgt tgcccggctt caagtccctg tgaatcacgc cggcctcgtg cgcggcggcg
      721 acggcagccg aggtctggag catgagcgag acggcgcgcg ccgggtctag cggcgcctcg
      781 cgcgcgagca cgtcccgcag agacctgccc tctaaaagct ccatgacgat atagacgagc
      841 ccgtccgaag tctctccgaa gtcagtgacg gccaccgcgt tcgagtgctg tatgcgcccc
      901 gcggcgagcg cctccctgcg gaagcgctcg cgcgcggcct cgtccgtcac cagccgcgtg
      961 ctcaagacct tcacggcgac ggggcgctcg atgagcaggt gcgtggcgcg atagacggcg
     1021 cccatgccgc cctcgccgag ccgcgcgtcg agcctgtact tgtcgtcgag cacccgcccg
     1081 aggagcgggt caaccggcgc gtgggagcgg agagtatcgt cggcccgcag cggcgccgcg
     1141 tcgtcggggc agacggtctc gcccgcgtcg aatgtgcgac cgcatttcgg gcattggagc
     1201 atggctacgg gctaagagtc agcaacgcgc gggggagcct tgaggataaa cacgccgacc
     1261 gtccaggtgc aaccggagac cggccctgga cggtcggctt gaggggctcg cgcgcacggg
     1321 cgcttcactc ggtgttaggg ttaatctcgt tgttgacggt gtcgctgtcc gggttctccg
     1381 cacccggcat gggcgagccg ggcggcggct cgccgtggac cttcatgttg gggctctcct
     1441 caatctttac ggggctttgc tcccccgtaa tagtcccctc gccttcgtac tcgggcatga
     1501 caacctcctg tgcttcgata atcaatcgtc gccggccaga acctgcgcgc gctcggcagc
     1561 ggccggctca gtctcctcgg cctcgacgac ggccgacgcc tcgtcgcgca tgcggttacg
     1621 gtacgcggcc cgcacgaaag atgcaaacag agggtggggc gcgagcggct tcgacttgta
     1681 ctcggggtgg aactggcagc ccaaaaacca cgggtgcgcg tcgcgcggca gctcgaccat
     1741 ctcgacgaag cggccgtcca ccgagacgcc gctgaagacg agcccggcgc gctcgagctg
     1801 ctctcggaac tccgggttga actcgtatcg gtgccggtgg cgctcgctta tctgcggggc
     1861 gccgccgtaa acctcgcgcg cgaggctccg ctcggcgagc aggcactccc aggcgccgag
     1921 gcgcatcgtc ccgcccaaat cttcgacgtt agccagatcg cgcagcttga agatgaccgg
     1981 gtagggcgtt tcggggtcga actccgtcga gtccgcgccc accagcccgc agacgtttcg
     2041 cgcgtactcg atgacggccg tctgcatgcc gaggcagatg ccgaagtagg gcgtctgcgt
     2101 ccgccgcgcg taggagatgg cgcggatcat gcccgcgacg ccccgcttgc cgaagcctcc
     2161 ggggacgagt atggcgtcga agtcgcgcag gcgatcctcg aagtcatcgc ccatcaaact
     2221 ctccgactct acccaggtaa cgtccacgcg caggttgttg gcaacgccgc cgtgcgtgag
     2281 cgcctcgcgc agagacttgt aggagtcttc gagctcgacg tacttgccga caatgccgat
     2341 gcgggcgtgg cccgcggggt cgcgtatggt cgcgaccagc tcacgccagc gcgtcagttc
     2401 gctctgcgcg gcgcgctctt cgaggccgag cgaggtgaca atgaggttgt cgagcccctg
     2461 ctcgtggaat gcgagcggca cctcgtagat gttcccgaca tcctcggcgg cgatgacggc
     2521 gtgctccttg acgttgcaga agagggctat cttcgagcga agctcgcgcg gcagcgggcg
     2581 ctccgagcgg cagagcagta tgtcaacggc g
//
LOCUS       DASPKR010000095        10202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1691952, whole genome shotgun sequence.
ACCESSION   DASPKR010000095 DASPKR010000000
VERSION     DASPKR010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10202)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10202
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1691952"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1002)
                     /locus_tag="VD968_02775"
     CDS             complement(<1..1002)
                     /locus_tag="VD968_02775"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13347.1"
                     /translation="MFYAPARGMAEARDRAPLGPALLVAFAAHGGYLLYVLWPYVSAG
                     GVPGRPAGLAVVGWKAAGALLFACIVFVPVVVFVSNVVERRASFGLMLRQEYAPVASA
                     VLYARAAASLAALPLAALVRSSGVEAASYEQSTQMLSDMARQSGTTLEQILAESPYLM
                     PESFANTIFLPFLIVWLVVAVREAMRFSWARALLAVLGSGLAMVPLTAMLSRVFEWVL
                     MSPFLLLLLVFMMRGYIGELMRGQRARAAFRQNLEAATLNPADASAHYNLGLIHQGRG
                     ELDEARKRFERAVEIDAEEVDSHYQLGRIAREQGRLSDAINHFGEVVARDPAHAQHEI
                     "
     gene            complement(1133..1819)
                     /gene="lepB"
                     /locus_tag="VD968_02780"
     CDS             complement(1133..1819)
                     /gene="lepB"
                     /locus_tag="VD968_02780"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:TIGR02227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HYE13348.1"
                     /translation="MGLFRRKRAGAHVFGDVHFEDDRDIEVQRPRDESRAHFWAEARL
                     LMRDLLFALMIMALVLVFVAQPVKVEGTSMLPRLHDGERIFVNKLIYYGLPELERGDI
                     VVFWFPDDPTKSYIKRIIGLPGETVQMRAGRVFVNGRELAEPYLDPAHNAAPDDRPPV
                     YVRPHYYFVMGDNRDNSSDSRAWGLVPAKYIYGKALFRYWPLSEASVIRHETEYPGVP
                     RKRPVQEVEE"
     gene            2043..2414
                     /locus_tag="VD968_02785"
     CDS             2043..2414
                     /locus_tag="VD968_02785"
                     /inference="COORDINATES: protein motif:HMM:NF012442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HYE13349.1"
                     /translation="MIKLDIVNRVAERTGVPKMKAEQAVDALFHSMKEALSRGERIEL
                     RGFGVFVVKPRKRGVGRNPRTGEEVAIPSGKTIRFKPGKELQAHGFDSEHDEGDHDDD
                     QNSSDSAADSHGGDATRPPEF"
     gene            2495..3529
                     /locus_tag="VD968_02790"
     CDS             2495..3529
                     /locus_tag="VD968_02790"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HYE13350.1"
                     /translation="MSETVRSIPTFITPAGAFPRRAARPTAREWARHWALFLLTALTA
                     TWAGVTFALPLGDIPEPAVALSTPLDYLLFVPKYYLLELRAMASFALSHPLYIGEGLK
                     FSAALLSILLAHEAGHYVACRIYGVEATLPFFIPMPPPFMAGTLGAFIKIKSHIPSRR
                     ALFDIGVAGPLAGFLVIIPVAALALLTARPHEAPLPLEGIIVFNDPLLLRLLAGPLGV
                     EDLPGIAPNPFYFAAWIGLLVTSLNLLPVGQLDGGHAVYALAGGRRHRLVGRLAFLSM
                     AVLAPLGLLLHGAPSGFLYVILLFVMLRMRHPEAADESDRLGRTRTVVAALTLVVFIL
                     SFTPFPLTIK"
     gene            complement(3589..3957)
                     /locus_tag="VD968_02795"
     CDS             complement(3589..3957)
                     /locus_tag="VD968_02795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13351.1"
                     /translation="MRSFLIRLSVALAAFVLGVTAAAAFGVSLWPRARHSYRKSIYVS
                     PPARHRQYDCPKRMRSFEHPAPPVMPTLPEMPAPPAPPAEVETLPSEHGAERRIRIRR
                     PDGSVEVIELKTEARPGGNF"
     gene            complement(4056..5072)
                     /locus_tag="VD968_02800"
     CDS             complement(4056..5072)
                     /locus_tag="VD968_02800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13352.1"
                     /translation="MADYRDKLDEWREAARRKARELDEKYNIRERVEEGARAAGDAAR
                     RGADTVKTGADRARAEAERLGEDFDVREHAGEVRARAEEAREQAGRAAEEAARLAREV
                     GERVRGAGQKAGERAGEVLGGAKKYYESASRVVGAGARATRLTSASTRGLYRAYDWAR
                     QNPKQAIVVTLSLAAGVRAGAAFPGLDAVLLGAHPHWLTHSALPVWAVRRLGKKFDSY
                     IREREQLIAAGELDEAERRRVEFERNAVRYVGAPLLGAFSCAAGLAIWAQILQPGPVV
                     GAPISWLLGGNPVLDAVWLFANGVICFQQGYKFFMIALRDQEDAARIVRELKGLLPAA
                     AAGA"
     gene            complement(5170..6114)
                     /locus_tag="VD968_02805"
     CDS             complement(5170..6114)
                     /locus_tag="VD968_02805"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HYE13353.1"
                     /translation="MSATQFSILVVDDEPDKLQLLAFALREEGYEVHTATDGESGLAA
                     VERHQPDLIITDVMMPRMNGYEMIRRVRSNPRTKFIPVIIQSAARVEAHDMRLGSEVG
                     ALGYITDPLDIDLLRARARTLLDFKRYLDSCEEAAFTDHLTGLANRRRFERQLEREAA
                     RTERYGHPFCLLLIDIDNFKEVNDTQGHDAGDEAIRRVGGAIQTATRGIDTCARIGGD
                     EFAVILPETDIERGLEVAERLRAAIAAVGGGGITASLGVAEMPASAHDGGALRAAADA
                     ALYEAKRAGRDRACRAPAAAPPGEGRAGPNHTPALGVS"
     gene            6425..7138
                     /locus_tag="VD968_02810"
     CDS             6425..7138
                     /locus_tag="VD968_02810"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYE13354.1"
                     /translation="MSHRRACDLTQEDRAEIIRDSEIGPSLDPETLARLAAASTAVDA
                     RRRRFIYRAGDAADSLFVIESGRVKICSMDAETGREAVIDIIGPGALFGESSLYSAGV
                     REKCALAYENARLLQIPAGEFREAMGASRGLYDYTFRMLGQRLTRAERRVADFALDAI
                     PARLDKLLAEMSERYGQPSPGGVLIDLPLPHREIASIVGSTRESVTVRLNALKRAGII
                     DFVDRKILIKTPAATTAAV"
     gene            7207..7425
                     /locus_tag="VD968_02815"
     CDS             7207..7425
                     /locus_tag="VD968_02815"
                     /inference="COORDINATES: protein motif:HMM:NF015821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HYE13355.1"
                     /translation="MKCPICRRPAAWEDNPFRPFCSERCKLLDFGAWVNEEYGVPAEE
                     TAPSLEGGETPPGEAGEGPEARGEYRDR"
     gene            7477..8121
                     /locus_tag="VD968_02820"
     CDS             7477..8121
                     /locus_tag="VD968_02820"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HYE13356.1"
                     /translation="MRLTFNKVLSARGALAAALVAALAFAAGCEMDGASKKRPRAAAE
                     TPRGQRPPATSRPMPPVEPAHAAGARRGGWTQLDGRRAALEDFRGQVVVLDFYATYCP
                     PCEEEVPHLVKLQREHGPRGLKVIGLNVGGEEDQAKVPGFVKKLGIQYQLANPDEETV
                     DTFLAGNSSIPQTFVFDRQGRMVEHFVGYDLEVAARLEAAIKSALDAKPAGEGE"
     gene            8223..9662
                     /gene="pyk"
                     /locus_tag="VD968_02825"
     CDS             8223..9662
                     /gene="pyk"
                     /locus_tag="VD968_02825"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: protein motif:HMM:NF004491.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HYE13357.1"
                     /translation="MRRAKILATIGPASRDTAVLEALLSAGANGVRINMSHGTQEEHS
                     DVIRRARAVAERLRRPLAVLVDLSGPKIRTGMLKGGQPVTLENNAVFTITTRSVVGDS
                     REVSTNYQGLARDVRPGTRILLDDGMIDLVVESTTETDVVARVVNGGPLGERKGINLP
                     GVALPIPSLTDKDRRDLQWAVREGADYIALSFVRRAEDCLEAKALIKSAGGGQPLVAK
                     IEKSEAIDNMEAVIEAADGVMVARGDLGVETSVELVPVYQKRIIEAANVKGKVVITAT
                     QMLQSMISEPRPTRAEASDVANAVWDGTDAVMLSGETAAGKFPVLAVATMARIVESAE
                     SGIKTEAGDITRWAGKQSGRVSRALCEAAAFAAEEISARTIAVITESGLMARRLAALR
                     PAQRIVALTSNRQVRNELSLVWGVESLLHARCDNAEDMLRVCERTLVEAAAAQQGETL
                     VLMAGRLSGMGLSSSVTLYTVGGPLPRQL"
     gene            9681..>10202
                     /locus_tag="VD968_02830"
     CDS             9681..>10202
                     /locus_tag="VD968_02830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13358.1"
                     /translation="MAADWQISFGDSAELLRPAYFALSALLSTLVLRDARRRAGFGPP
                     SVAAWALFVLAFPPVFLPLYLAARLFTSGAATSTSTQDDGAQTAGGEIDEKAAVPPSR
                     ARGLLRAVVPAYALTLVAIFAAYFYADYSSFDAHMARAERAKLYNRPARAVEEYRAAL
                     AMREDAHARKLLGL"
BASE COUNT         1601 a         3593 c         3393 g         1615 t
ORIGIN      
        1 gatctcgtgc tgcgcgtgcg cggggtcgcg cgccacgacc tcgccgaagt ggttgatggc
       61 gtcggagagc cgcccctgct cgcgcgcgat ccggcccagc tggtagtgcg agtccacctc
      121 ctcggcgtct atctcgacgg cccgctcgaa gcgcttgcgc gcctcgtcca gctcgccgcg
      181 cccctggtga atcagcccga ggttgtagtg ggccgaggcg tccgccgggt tgagcgtagc
      241 ggcctccagg ttctgcctga aggccgcgcg cgccctctgc ccgcgcatca actcgccgat
      301 gtagccgcgc atcatgaaga cgagcagcag cagcaggaac ggcgacatca agacccactc
      361 gaagacgcgg ctgagcatcg ccgtaagcgg caccatcgcc agcccgctgc ccaaaacggc
      421 caacagagcc cgcgcccacg agaaacgcat cgcctcgcgc acggccacga cgagccacac
      481 gatcaggaac ggcagaaata tcgtgttcgc gaagctctcc ggcatcaggt aggggctctc
      541 ggcgagaatc tgctcgagcg tagtgccgct ctgccgcgcc atgtccgaga gcatctgcgt
      601 ggactgctcg tagcttgcgg cctccacccc gctggagcgc acgagcgcgg ccagagggag
      661 agccgccagg ctcgccgccg cccgcgcgta gagcacggcc gaggccacgg gcgcgtactc
      721 ctgcctgagc atcaggccga agctggcgcg ccgctcgact acgttcgaga cgaagacgac
      781 gacggggacg aagactatgc aggcgaagag aagcgccccg gccgccttcc accccacgac
      841 cgcgaggccc gccggcctcc ccggcacgcc ccctgccgag acgtaaggcc agaggacgta
      901 gagcaggtag ccgccgtgcg cggcgaaggc gacgagcagc gctggcccca gaggggctcg
      961 gtcgcgcgcc tcggccatcc cgcgcgccgg cgcgtagaac atcaacagta ggggtcgcag
     1021 ccagtcagcc attaaaacag tgggcagaag gcagaaagca gaaggcggcg atagtttgca
     1081 atctcaaatt tgaaatttca aatcgcggga tagccatcat cctgactgcc ttctattctt
     1141 cgacttcctg cacgggccgc ttgcgcggga cgccggggta ctcggtctcg tggcgtatga
     1201 cgctcgcctc cgacagcggc cagtagcgga agagcgcctt gccgtagatg tacttggccg
     1261 ggacgagccc ccacgcgcgc gagtcgctcg agttgtcgcg gttgtcgccc atcacgaagt
     1321 agtagtgcgg gcggacatag acgggcggtc ggtcgtcggg cgcggcgttg tgggcggggt
     1381 cgaggtaggg ctcggccagt tcgcggccgt tgacgaagac gcggccggcc ctcatctgca
     1441 cggtctcgcc cggcaggccg atgatgcgct tgatgtagct cttcgtgggg tcgtccggga
     1501 accagaagac gacgatgtcg ccgcgctcga gctccggcag gccgtagtat atgagcttgt
     1561 tgacgaaaat cctctcgccg tcgtgcagcc gcggcagcat cgaagtccct tcgaccttga
     1621 cgggctgcgc gacgaagacg agcaccagcg ccattatcat caaggcgaac aggaggtcgc
     1681 gcatcagcag ccgggcctcg gcccagaagt gcgcgcgcga ctcgtcgcgg gggcgctgaa
     1741 cttctatgtc tcggtcgtcc tcgaagtgga cgtcgccgaa gacgtgcgcg ccggccctct
     1801 ttcgcctgaa caagcccatc cgaagccctc tccgacgccc gcggcgccct aaaagcttac
     1861 accgtccgag gttagccgcc cgcccgaggc tttgtcaacg cggcccacac gggcgcgcgc
     1921 ttcgccgccc ggaagcttga cagccgtcgc ggcgcgtctc tattatcgcg gcgtaaagtg
     1981 ttgcaggact tacacaaaca cggccggcgg ccggggccgg cccggaggag gcagcgagcg
     2041 aagtgattaa actcgacata gtcaaccgcg tcgccgagcg cacgggcgtg ccgaagatga
     2101 aggccgagca ggccgtggac gcgctcttcc actcgatgaa agaggcgctc tcgcgcggcg
     2161 agcgcataga gctgcgcggc ttcggcgtct tcgtcgtaaa gccccgcaag cgcggggtgg
     2221 ggcgcaaccc gcgcacggga gaggaggtcg ccataccctc cggcaagacc atccgcttca
     2281 agcccggcaa ggagttgcag gcgcacggct tcgacagtga gcacgacgag ggcgaccacg
     2341 acgacgacca gaatagcagc gactccgccg ccgactccca cggcggcgac gcgacccgcc
     2401 cgcccgagtt ctaagcagat gccgggtgcc ggatgttagg tgctggcgaa ggggaaaccg
     2461 gcatctaaca tccggcatct agcatctgtc tcttatgtcc gaaaccgtcc gcagcatacc
     2521 cactttcatt accccggccg gcgccttccc gcgccgcgcg gcgcgcccga ccgcgcgcga
     2581 gtgggcgcgc cactgggccc tttttctgct cacggcgctc acggccacgt gggccggcgt
     2641 gaccttcgcg ctcccgctcg gcgacatccc cgagccggcg gtcgcgctct cgacgccgct
     2701 cgactacctg ctcttcgtcc cgaagtatta cctcctggag cttcgggcga tggcatcctt
     2761 cgcgctctcg cacccgttgt acataggcga gggcctgaag ttctcggcgg cgctgctctc
     2821 gatactgctc gcgcacgagg ccggccacta cgtcgcgtgc cgaatctacg gcgtcgaggc
     2881 gacgctcccc ttcttcatcc cgatgccgcc tcccttcatg gccggcacgc tcggcgcctt
     2941 catcaagata aagtcgcaca tcccttcccg ccgcgcgctc ttcgacatcg gcgtcgctgg
     3001 cccgctcgcg ggcttcctcg tcatcatccc cgttgcggcg ctcgcgctcc tgacggcccg
     3061 cccgcacgag gcgccgctcc cgctcgaagg cataatcgtc ttcaacgacc cgctgctgct
     3121 caggctcttg gccgggccgc tcggcgtcga agacctaccc ggcatagcgc cgaacccctt
     3181 ctacttcgcc gcgtggatcg gccttctggt gacgagcctg aaccttctgc ccgtcggcca
     3241 gctcgacggc ggccacgccg tctatgcgct ggcgggcggg cgccggcaca ggctggtggg
     3301 gcgcctggcc ttcctctcga tggcggtgct cgcgccgctc gggcttctgc tgcacggcgc
     3361 gccgagcggc ttcctctacg tcatactgct cttcgtcatg ctccggatgc gccaccccga
     3421 ggccgcggat gagtcggaca ggctcggccg cacgcgcacg gtcgtcgccg cgctcacgct
     3481 cgtcgtcttc atactctcgt tcacgccttt cccgctaacc atcaaataat agagggccgc
     3541 gcgaccagtc gggtcgcgcg gccctctcac gtaactcccg cgccggggct agaagttccc
     3601 gcccgggcgc gcctccgtct taagctctat gacctcgacc gacccgtccg gccggcgtat
     3661 gcgtatgcgc ctctcggcgc cgtgctccga cggcagcgtc tcaacttcgg ccggcggcgc
     3721 cgggggggcg ggcatttctg gcagtgtggg catcacgggc ggcgccgggt gctcgaacga
     3781 gcgcatgcgc ttcgggcagt cgtactgcct gtgacgggcg ggcggcgaga cgtaaattga
     3841 cttgcggtag ctgtgccgcg cgcgcggcca gagcgagacg ccgaaggccg cggcggccgt
     3901 cactcccagg acgaaggccg cgagcgcgac ggagaggcgg ataagaaagc tgcgcatatt
     3961 aacttctcaa actccttccc tctggttgtt tgccgacacg ataacgcaag tgcgcgcccg
     4021 ccggctcatc tttcttgtaa cgcacttgta aaacttcagg ccccggccgc ggcggcgggc
     4081 agcaggccct tcagctcgcg cacgatcctc gcggcgtcct cctgatcgcg cagcgctatc
     4141 atgaagaact tgtagccctg ctggaaacat atcacgccgt tggcgaagag ccacacggcg
     4201 tcgaggacgg ggttaccgcc caggagccag cttattggcg cgccgacgac ggggccgggc
     4261 tgtagaatct gcgcccagat ggccagaccc gcggcgcaac tgaacgcgcc gagcagcggc
     4321 gcgccgacgt agcggacggc attgcgctcg aactcgacgc ggcggcgctc ggcctcgtcc
     4381 agttcgccgg cggcgattag ctgctcgcgc tcgcgtatgt acgagtcgaa cttcttcccg
     4441 agccttcgca ccgcccagac gggcagcgca gagtgcgtaa gccagtgcgg gtgcgcgccg
     4501 agcagcacgg cgtccaggcc ggggaaggcc gcgcccgcgc gcacgcccgc cgccagcgag
     4561 agcgtgacga cgatggcctg cttagggttc tgccgcgccc agtcgtacgc gcggtagagg
     4621 ccgcgcgtcg aggccgacgt gagccgcgtc gcgcgcgcgc ccgcgcccac gacgcgcgac
     4681 gcgctctcgt aatacttctt cgcgccgccc aggacttcgc ccgcgcgctc gcccgccttc
     4741 tggcccgcgc cgcgcacgcg ctcccccacc tcgcgggcta ggcgcgcggc ctcctctgcg
     4801 gcgcgccccg cctgctcgcg cgcctcttcg gcccgcgcgc gcacttcgcc cgcgtgctcg
     4861 cgcacgtcga agtcttcgcc gaggcgctcg gcctctgcgc gcgcgcggtc ggcgccggtc
     4921 ttgacggtgt cggcgccccg gcgggcggcg tcgcccgcgg cgcgcgcgcc ctcctcgacg
     4981 cgctcgcgta tgttgtactt ctcgtccagc tcgcgcgcct tgcgcctcgc ggcctcgcgc
     5041 cactcgtcga gcttgtcccg gtaatcggcc atttcaaaat ccctctgaaa acgcagaatg
     5101 cagagtgcag ggtgatgaat gagaggcagg gtttaattca tcattctgca ctccgcactc
     5161 atcacctcct taagatacgc cgagcgcggg cgtgtggttc gggccggcac ggccttcgcc
     5221 cggcggcgcc gcggccggcg cgcggcaggc gcggtcgcgg cccgcgcgct tggcctcgta
     5281 gagcgcggcg tcggccgcgg cccggagcgc gccgccgtcg tgcgcggacg cgggcatctc
     5341 ggcgacgccc aggctcgccg ttatccctcc tccgccgacg gcggcgattg cggcgcgcag
     5401 gcgctcggcg acctccaacc cgcgctcgat gtccgtctcc ggcagtatga cggcgaactc
     5461 gtcgccgccg atgcgggcgc acgtgtctat gccgcgcgtc gcggtctgga tggcgccgcc
     5521 gacgcggcgt atcgcctcgt cgcccgcgtc gtggccctgc gtgtcgttca cctctttgaa
     5581 gttgtctatg tctatgagca gcaggcagaa cgggtgaccg taacgctccg tccgcgcggc
     5641 ctcgcgctct agctgccgct cgaagcggcg gcggttcgcg agccccgtca ggtggtcggt
     5701 gaaggccgcc tcctcgcacg agtcgaggta gcgcttaaag tcgagcaggg ttcgcgcccg
     5761 cgcgcgcagg aggtcaatgt cgagggggtc tgtgatgtag ccgagcgcgc cgacctcgga
     5821 gcctagccgc atgtcgtgcg cctcgacgcg cgcggccgac tgtatgatga cgggtatgaa
     5881 cttagtccgc gggttagagc gcacgcggcg tatcatctcg tagccgttca tgcgcggcat
     5941 catcacgtcc gtgatgatga ggtcgggctg gtggcgctcg accgccgcga ggcccgactc
     6001 gccgtccgtg gccgtgtgaa cctcgtagcc ctcctcgcgc agcgcgaagg ccaggagctg
     6061 gagtttgtcg ggctcgtcgt caaccacgag gatgctgaat tgggtcgcgc tcataaggga
     6121 gtcgaaaaca ggtcttgcgc gcacagcccc ttcgtgctat tgtgcgcggt aattcaaagg
     6181 gacggttccc gccccgcgtc agttgaaaaa cagcttacct catcgggcgg gaataaagtt
     6241 tatatttttg ggttcacctc gcggcacagg cgctttccac gctcgcttta actctctttc
     6301 ccggtcaagg caggtcccga ggaacggttt aaccctcgtc cgtttgatgc cgcccgcgcg
     6361 tgcgcccgtg ctccggcgcg cgcccttaaa agttccctga ctccaaccca gaggatttcc
     6421 cccgatgtca caccgacgcg cctgcgacct tactcaggaa gaccgcgccg agattatacg
     6481 cgactcggag ataggcccga gcctagaccc cgagacactc gcccgactgg ccgccgcctc
     6541 gacggccgtg gacgcccgcc gccgccgctt catctaccgc gcgggcgacg cggccgactc
     6601 gctcttcgtc atcgagagcg gccgcgtcaa aatctgctcg atggacgccg agacgggccg
     6661 cgaggccgtc atagacataa tcggccccgg cgccctcttc ggcgagtcgt cgctctactc
     6721 ggcgggggtg cgcgagaagt gcgcgctcgc ttacgagaac gcgaggctcc tgcaaatacc
     6781 tgcgggggaa tttagggagg ccatgggggc tagccgtggg ctttatgatt acaccttccg
     6841 catgctcggt caacgcttga cgagggcgga gcgcagggtg gccgacttcg ccctcgacgc
     6901 gatacctgcg cgcctcgaca agctcctcgc cgagatgagc gagcgctacg ggcagccgtc
     6961 tccgggcggc gtcctcatag atttgccgct cccgcaccgc gagatagcct ccatcgtcgg
     7021 ctcgacgcgc gagagcgtga ccgtccgctt gaacgccctg aagcgcgcgg gtatcattga
     7081 cttcgtagat cggaaaatac tcatcaaaac gcccgcggcg acgaccgccg cggtctaaaa
     7141 gctgtcggcg gtcggctttc agcttttgga gcgcgccggg cggtttagct gattgctgac
     7201 agctttatga agtgccctat ctgccggcgc cccgccgcct gggaagacaa ccccttccgc
     7261 cctttctgtt ccgaacgctg caagctgctc gacttcggcg cgtgggtcaa cgaggagtac
     7321 ggcgtccccg ccgaagagac tgccccctcg ctcgaaggcg gcgagactcc gcccggcgag
     7381 gccggcgaag gccccgaagc gcgcggcgag taccgcgacc gctagcccgc gtgtagaata
     7441 gtgtgcgtga gtgaccgggg agggtttcgg ccgaggatgc gcctgacatt caacaaagtc
     7501 ttaagcgcgc ggggggcgct ggccgccgcg ctcgtcgccg cgctcgcctt cgcggccggg
     7561 tgcgagatgg acggcgcgtc gaagaagcgg ccgcgggccg cggccgagac gccgcgcggc
     7621 cagcgcccgc cggcgacgag caggcccatg ccgcccgtcg agcccgcgca cgccgccggt
     7681 gcgcgccgcg gcggctggac gcagctcgac ggcaggcgcg ccgccctcga agacttccgc
     7741 ggccaggtcg tcgtcctaga cttctacgcc acctactgcc cgccctgcga ggaggaagtg
     7801 ccgcacctcg tcaaattgca gcgcgagcac ggcccgcgcg gcctgaaggt catcggcctc
     7861 aacgtcggcg gcgaggagga tcaggccaaa gtccccgggt tcgtcaagaa gctcggcata
     7921 cagtaccagc tcgccaaccc cgacgaggag accgttgaca ccttcctagc cggcaactcc
     7981 tccatcccgc agaccttcgt cttcgaccgg cagggccgca tggtcgagca cttcgtcggc
     8041 tacgacttgg aggtggcggc gcggctagag gcggcaatca agtcggcgct cgacgcaaag
     8101 cccgcgggcg aaggcgagta actaaaagtc gaaccgagga gtctccgggt gtggagtcta
     8161 gacggctttt gttttagact ccgggctctg aagactccat tttcatttcg aggggacgaa
     8221 gggtgaggag agccaagata cttgccacga tcggcccggc gtcgcgcgac acggccgtgc
     8281 tcgaagcgct cctgtcggcc ggcgccaacg gcgtgcggat aaacatgtcg cacggcacgc
     8341 aggaggagca ctcggacgtg atccgccggg cgcgcgcagt ggccgagcgc ctgcgccggc
     8401 cgctcgccgt gctcgttgac ctctcggggc cgaagataag gacgggcatg ctcaagggcg
     8461 gccagcccgt aacgcttgag aacaacgccg tcttcaccat caccacccgc tcggtcgtcg
     8521 gcgactcgcg cgaggtctcc acgaactacc agggcctcgc ccgcgacgtg cgccccggca
     8581 cccgcatact gctcgacgac ggcatgattg atctggtcgt cgagagcacg accgagacgg
     8641 acgtggtcgc gcgcgtcgtc aacggcggcc cgctcggcga gcgcaagggc ataaacctgc
     8701 cgggcgtcgc gctccccata ccttcgctca cggacaagga caggcgcgac ctacagtggg
     8761 ccgtgcgcga gggcgccgac tacatcgccc tctccttcgt gcggcgcgcc gaggactgcc
     8821 tcgaagcgaa ggcgctgatt aagtcggcgg gaggcgggca gccgctcgtc gccaagatcg
     8881 agaagtccga ggctatcgac aacatggagg ccgtcatcga ggccgccgac ggcgtgatgg
     8941 tcgcgcgcgg cgacctcggg gtggagacga gcgtcgagct agtccccgtc tatcagaagc
     9001 gcatcatcga ggcggcgaac gttaaaggca aggtcgtcat caccgccact cagatgctcc
     9061 agtccatgat aagcgagccg cggccgacgc gcgccgaggc gtccgacgtt gcgaacgccg
     9121 tgtgggacgg caccgacgcc gtgatgctct cgggcgagac cgccgccggc aagttcccgg
     9181 tactggcggt cgcgacgatg gcccgcatcg tcgagtcggc cgagtcgggg ataaagacgg
     9241 aggccggcga cataacccgc tgggcgggca agcagtcggg gcgcgtgagc cgcgcgctgt
     9301 gcgaggcggc ggcgttcgcc gcggaggaga taagcgcgcg caccatcgcc gtcatcacgg
     9361 agtcggggct gatggcgcgc aggctcgcgg cactgcggcc ggcgcagcgc atcgtcgcgc
     9421 tcacgtccaa ccggcaggtg cggaacgagc tgtcgctcgt ctggggcgtc gagtcgctcc
     9481 tgcacgcgcg gtgcgacaac gcggaggaca tgctcagggt ctgcgagcgc acgctcgtcg
     9541 aggcggccgc ggcgcagcag ggcgagacgc tcgtcctgat ggccggcagg ctctcgggga
     9601 tgggcctctc cagctccgtc acgctctaca ccgtcggcgg cccgctgccg cggcagctct
     9661 aggcctctct ctgcgcgcgc gtggccgccg actggcaaat ctccttcggc gactcggccg
     9721 agcttctgcg cccggcctac ttcgccctct cggcgctcct ctcgactctg gttctgcgcg
     9781 acgcgcgccg gcgcgccggc ttcggcccgc cctcggtcgc cgcctgggcg ctcttcgtgc
     9841 tcgccttccc gcccgtcttc ctcccgctct atctcgccgc gcgactcttc acaagcggcg
     9901 cagcgacatc aacgagcaca caagatgacg gggcgcaaac cgccgggggc gaaattgacg
     9961 agaaggccgc cgtcccgccg tcgcgggctc gcggcctgct gcgcgcggtc gtccccgcct
    10021 acgcgctgac tctcgtcgcg atcttcgccg cctattttta cgccgactac agcagcttcg
    10081 acgcgcacat ggcgcgggcc gagagggcga agctctacaa ccggcccgcc cgcgcggtcg
    10141 aggagtaccg cgcggcgctc gccatgcgcg aggacgcgca cgcgcgcaag ctgctcgggc
    10201 tc
//
LOCUS       DASPKR010000096         2150 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1046015, whole genome shotgun sequence.
ACCESSION   DASPKR010000096 DASPKR010000000
VERSION     DASPKR010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1046015"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..851)
                     /locus_tag="VD968_02835"
     CDS             complement(<1..851)
                     /locus_tag="VD968_02835"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYE13359.1"
                     /translation="MTTSVSSKFRLASRLERVGFSDIVKIRNRIMELKAGGAPVYQFE
                     GGEPFLTTPEPIKEAMTRALAENRTRYAPSSGIPELRSAIASKLRERNRVPAREEDVI
                     VLNGGMQGLFAAFQSVVEPGEEVLVFSPFWTPIKDLIAHCRGNTVLVRTEDARRDGFA
                     ETLARLSTDKTRAVYFNTPQNPTGAVFTREECETVARFARERDLVVIADEAYEDLVYD
                     GEHVSIASLEGMFERTITSYTLSKSYAMTGWRVGYAVAAEPWMTGLRKCLLYSTNGVS
                     TPSQWAAL"
     gene            1210..1812
                     /locus_tag="VD968_02840"
     CDS             1210..1812
                     /locus_tag="VD968_02840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13360.1"
                     /translation="MTSNKILPVALVAALLGGTVGALVMRPGKSAETAQVAGVAAKAQ
                     PVEVADNKTASDNDMLEQELAEETKNLSDEEKALFREGFIEGVRASREAELTAPATRT
                     AARSSAAPAATRVVYRNTARRASTRQAPRRVYYDYGQTKGRSFWQKHRDKLTVAIGTG
                     AGAAIGGAIGGKKGALIGALSGAGGSALYTYKLRKRNRNY"
     gene            1888..>2150
                     /locus_tag="VD968_02845"
     CDS             1888..>2150
                     /locus_tag="VD968_02845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13361.1"
                     /translation="MLFAQWAAPWSTGAARFVSGEGGTGVEAEAGQAASRRAGERAAA
                     AAALPSPVAFRESEGRGLLVEVWVNGRGAYTFALDTGAGATILS"
BASE COUNT          361 a          698 c          751 g          340 t
ORIGIN      
        1 agcgcggccc actgcgaggg cgtcgagacg ccgttggtcg agtagagcag gcacttgcgc
       61 agccccgtca tccacggctc ggccgcgacg gcgtagccaa cgcgccagcc ggtcatcgcg
      121 taagacttcg agagcgtgta ggaggtaatc gtgcgctcga acatgccttc gagcgaggcg
      181 attgagacgt gctcgccgtc atagacgagg tcttcgtaag cctcgtcggc gattacgacg
      241 aggtcgcgct cgcgcgcgaa gcgcgccacc gtctcgcact cctcgcgggt gaagacggcc
      301 cccgtcgggt tctgcggcgt gttgaaataa acggcgcgcg tcttgtcggt cgagaggcgc
      361 gcgagcgtct cggcgaagcc gtcgcggcgg gcgtcttccg tgcggactag aacggtgttg
      421 ccgcggcagt gggcgatgag gtctttaatc ggcgtccaga agggcgagaa gacgagcacc
      481 tcctcgccgg gctcgacgac cgactggaag gcggcgaata ggccctgcat gccgccgttc
      541 aggactatca cgtcctcttc gcgcgcgggg acgcggttgc gctcgcgcag cttcgatgcg
      601 atggccgacc gaagctccgg tatgccggac gagggcgcgt agcgcgtgcg gttctcggcg
      661 agcgcgcgcg tcatcgcctc ctttatcggc tcgggcgtcg tcaggaaggg ctcgccgccc
      721 tcgaactgat agacgggcgc gccgccggcc ttcagctcca ttatcctgtt gcgtatcttg
      781 acgatgtctg agaaccccac gcgctcgagg cgcgaggcga ggcggaactt cgatgaaacg
      841 gacgtggtca cgacagagcg gcgtacctcc ggaagtctgg ggcgagcaag ggcggattat
      901 agacccgcgc tcgcgaaagc gtccaatcgt gcgccccgcc aagcgttgag gatatgggtt
      961 acacgcgcag tccaaatcgt gtacgcgccc cgccgccgtg ccgctgaggg cggggccgtt
     1021 tcttgtcgtt cgatgacgaa ataattgtgt ttcggccgta aaagccgccc cgcagcgtct
     1081 atttgctaga gtgaggcggg aggggccggg gctcggcttc tgaggaacgc cgtttgccaa
     1141 aagccagggc gcgtacattc tctcgtgcgt cttaaaagaa ctaagaagaa ctgaggagac
     1201 accgaaccca tgacatcgaa caagattcta cccgtcgccc tggtcgcggc cctgctcggc
     1261 ggcacggtcg gcgcgctggt gatgcgcccc ggtaagagcg cggagaccgc tcaggtcgcc
     1321 ggcgtcgcag ctaaggccca gccggtcgag gtggccgaca acaagacggc ttccgacaac
     1381 gacatgctcg aacaggagct ggccgaagag accaagaacc tctcggacga ggagaaggcg
     1441 ctcttccgcg agggcttcat cgagggcgtg cgcgcctcgc gcgaggccga gctgacggcc
     1501 cccgcgacga ggacggccgc tcgctcgtcc gccgctccgg ccgcgacgcg cgtcgtctat
     1561 cgcaacaccg cgcgccgcgc ctcgacgcgt caggcgccgc gccgcgttta ctacgactac
     1621 ggtcagacca agggccgctc gttctggcag aaacaccgcg acaagctgac ggtcgccatc
     1681 ggcaccggcg ctggcgcggc catcggcggc gccatcggcg gcaagaaggg cgcactcatc
     1741 ggcgcgctct cgggcgctgg cggctcggcg ctctacacct acaagctgcg caagcgcaac
     1801 cgcaactact aagaccgggg cgggggaact tccgtgggga gactgaagtc aagagtcttc
     1861 ggcgcggcct cagttctgac ccttgccttg ctcttcgcac agtgggcagc cccctggtca
     1921 acgggggctg cccgcttcgt ttcgggcgag ggcgggacag gcgttgaggc tgaagccggt
     1981 caggccgctt cgcggcgggc gggcgagcgc gcggcggcag cagcggcgct cccttcgccc
     2041 gtcgcattcc gcgagtcgga ggggcgcggc ctgctcgtcg aagtctgggt caacggccgg
     2101 ggcgcgtaca ctttcgcgct cgacaccggc gcgggcgcga ccatcctctc
//
LOCUS       DASPKR010000097         6046 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1305621, whole genome shotgun sequence.
ACCESSION   DASPKR010000097 DASPKR010000000
VERSION     DASPKR010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6046)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6046
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1305621"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(237..992)
                     /locus_tag="VD968_02850"
     CDS             complement(237..992)
                     /locus_tag="VD968_02850"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE13362.1"
                     /translation="MGLEGKVAIVSGGARGIGRACSERLAQAGADVVVNYLKDERAAR
                     EVYTAVGSAGRKAILVRADVSTVEGAERVSAATLEVFGRADVLVCNAGLWRGAPVEGM
                     SEALWDEVIDVNLKGTWALCRAFVPTMKQAGYGRIVVISSTAGQRGEAFYSNYAASKG
                     GQISFVKSLAVELAPHGINVNAVAPGWVDTEMTADALSGAEARRVAEAAIPIGRVATA
                     DDIALPVLFLCSEWAKHINGEVLNVNGGSVLCG"
     gene            complement(1063..1794)
                     /locus_tag="VD968_02855"
     CDS             complement(1063..1794)
                     /locus_tag="VD968_02855"
                     /inference="COORDINATES: protein motif:HMM:NF019342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HYE13363.1"
                     /translation="MHRPLIGITMRHELETERFYLARDYGEAVEAAGGAPVHISLIPR
                     AGYIEEIVGRLDGVLLPGSASDVDPARYGRDPHKRLGAVHTLRDETDALVLGAAERRG
                     LPLFCICYGMQAWNVFRGGTLIQDIESQVSQAIKHEQGVPRARPSHRLRVQPESLLAR
                     LTGGEALFVNSHHHQAIETLGRDLKATAWAGDGLVEAVEDTTAGRWAVGVQWHPELGW
                     ASDKLSHGLFEAFINASRASASDNA"
     gene            1916..2461
                     /gene="hslV"
                     /locus_tag="VD968_02860"
     CDS             1916..2461
                     /gene="hslV"
                     /locus_tag="VD968_02860"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015365078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HYE13364.1"
                     /translation="MKRSAPAIRSTTILLVRRGANVALAGDGQVTLGDTVMKSGARKV
                     RRLYNDKILAGFAGTSADAFSLLARFESKLEQYHGNLERAAIELSKEWRTDKILRHLE
                     AMLIVADEKSSFLLSGNGDVIAPDGGVLAIGSGGPYALAAARALVEHTEMSAREIAGE
                     ALKLAGEICIYSNQNIIIEEI"
     gene            2480..3910
                     /gene="hslU"
                     /locus_tag="VD968_02865"
     CDS             2480..3910
                     /gene="hslU"
                     /locus_tag="VD968_02865"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HYE13365.1"
                     /translation="MVIYLSGEVDDEARLDEMTPRQIVAELDKFVVGQHAAKRAVAIA
                     LRNRVRRQKLPPEMAADVMPKNIIMIGSTGVGKTEIARRLARMSNSPFIKIEASKFTE
                     VGYVGRDVESMIRDLTEIAVDMVREERLDEVADKAEHNAEERLLDLLLPPRPSSGFYN
                     FDAEDDEDTSSAAAPAGAERDDQSQKTREKLRAQLRDGKLDNRLVEMEVREKSFPTIE
                     VAGPQGVEEMGINMKDMLGNLFQGRTKRQRMRVREALEYLVQEEEESLVDMDAVARQA
                     LERLETSGIIFLDEIDKIAGREQGSGPDVSREGVQRDLLPIVEGTTVNTRYGMVRTDH
                     VLFIAAGAFHVSKPSDLIPELQGRFPIRVELDSLTLEDFKRILTEPKNSLVKQYRALL
                     ETEGIDLEFTEEGVDALARFAVRVNEQTENIGARRLHTIMEKVLDEISFLGPDLEPKR
                     QVIDADYVNRTLAEIVKDQDLSRYVL"
     gene            4084..5046
                     /locus_tag="VD968_02870"
     CDS             4084..5046
                     /locus_tag="VD968_02870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13366.1"
                     /translation="MQRGNRVILSWPAPRRNASDSSVQSIRRVDVFRLAESADDPLAL
                     TEEEFSSRATLIGSVPFESAGAPGETLTYVDELALGEPVRLRYAVRYVNASGQRASFS
                     NFLIIEPAPSVSLPPALAPQAEVSQNAVTLRWQPPEANVDGTRPANILGYNVYRATRA
                     QNEPAQTPLNPEPLTATRFDDQTFKFGEEHTYVVRAVSLGTGGDPVESLNSNALTVLP
                     VDTFPPSPPAGLTAASSPSPLRISIFFAASPERDVAGYNLYRSNDPGLPKERWAKLNR
                     SPLDRTTFQDEGVESGVKYFYYATAVDTAGNVSQPSEVVSETAP"
     gene            5052..5834
                     /locus_tag="VD968_02875"
     CDS             5052..5834
                     /locus_tag="VD968_02875"
                     /EC_number="3.7.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HYE13367.1"
                     /translation="MKICRFVHPETQSPSYGIVEGDSVHALSGELSDGNLSLEDRGAA
                     FPLTTVRTLPPVMPSKIVCVGRNYRAHAEELGNPMPAEPLLFLKAPSAIIGDGDSILL
                     PEVSERVEHEGELAVVIGRSAKKLSDSDDPFAHILGYTCLNDVTARDLQRKDVQFTRA
                     KSFDTFCPVGPYVVTGLDPLDLKVETRVNGEVRQSGRTSAMAFAVPFLVRYISRVMTL
                     EPGDLIATGTPAGVGPLRDGDTVEVEVEGVGALRNDVRSASR"
     gene            5846..>6046
                     /locus_tag="VD968_02880"
     CDS             5846..>6046
                     /locus_tag="VD968_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012858492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYE13368.1"
                     /translation="MSSKGFTQTEIVVSAQELSKNYGDRAAVDRVRFEVRRGETFGLL
                     GPNGAGKSTTMRMIACRTTPTAG"
BASE COUNT         1161 a         2149 c         1737 g          999 t
ORIGIN      
        1 ggtttccctt accggcctga ctctcgatac tatccgcgac ggatagaagc ctgtgcgcga
       61 cgatgcgcag ttcctccacg tctcagcgga ctgcgttcag ccgcagcccc cgcgcgtaga
      121 agaagatcac cctccgcgcc ttctccgtgt atcgctcgaa catgatctca acgtcaccgg
      181 aacgttaatg cattgctcca agcggaacga caaaaacgct tgaacagtaa gggaaactat
      241 ccacagagca cggagccgcc gttgacgtta agaacctccc cgttgatgtg cttcgcccac
      301 tcactgcaaa ggaatagcac ggggagcgca atgtcgtccg ccgtcgcgac cctcccgatg
      361 ggtattgccg cttcggcgac cctgcgcgcc tccgcgccag agagcgcgtc ggcggtcatc
      421 tccgtgtcaa cccacccggg cgccaccgca ttgacgttga ttccgtgcgg ggccagctcg
      481 accgcgagag atttgacgaa agaaatctgc ccgcctttcg acgccgcgta attcgagtaa
      541 aaagcctccc cgcgctgccc ggccgtggag cttatgacga caatacgacc gtagcccgcc
      601 tgcttcatcg taggcacgaa cgctcggcac agcgcccagg tgcctttcag atttacgtca
      661 atcacctcgt cccagagggc ttcgctcatc ccttcgaccg gcgcccccct ccaaaggccc
      721 gcgttgcaca cgagcacgtc ggcgcgcccg aagacttcca aagtggccgc tgaaactctt
      781 tccgcaccct caactgtcga aacgtcagcc cttacgagaa ttgccttgcg ccccgcgctc
      841 cccacggcag tgtacacttc ccgcgcagcc ctctcgtcct tcaaatagtt tacgacgaca
      901 tcggcccccg cctgcgccag acgctccgag caagccctcc cgatgccgcg cgccccgccc
      961 gagacgatcg cgaccttccc ttccaacccc aaacctttaa gaagaccctg aatagatcaa
     1021 cccccgccaa taattttgaa gatctatgaa ggcttaacac cctcaggcgt tatcagacgc
     1081 ggacgcccgg ctggcgttaa taaatgcttc aaagaggccg tgggagagtt tgtccgatgc
     1141 ccaccccaac tcggggtgcc actgcacgcc gactgcccaa cggccggcgg tcgtatcctc
     1201 aacagcctcc actaggccgt cgccggccca cgcggtcgcc tttaaatccc gcccgagcgt
     1261 ctcaatcgcc tgatggtgat ggctgttaac gaaaagggcc tccccgcccg tgagcctcgc
     1321 caaaaggctt tcgggctgaa ctctcagacg gtgcgagggc cgcgcgcgcg ggactccctg
     1381 ttcgtgcttt atagcctgcg agacctgcga ctctatgtcc tgaatcaaag tcccgccacg
     1441 gaagacgttc catgcctgca tcccgtagca gatgcagaaa aggggcaggc cgcgcctctc
     1501 tgcggccccg agcacaagcg cgtcagtctc gtcgcgcaag gtgtgcactg cgcctagcct
     1561 cttgtgcggg tcgcgcccgt acctcgccgg gtcaacgtcc gaggcgctgc cgggcaggag
     1621 cacaccgtcg agcctgccga caatctcctc gatgtaaccc gccctgggga ttagagagat
     1681 gtggactggc gcgccgcccg ccgcctcgac tgcctctccg taatcacgcg ccaggtaaaa
     1741 cctctcggtc tcgagctcgt ggcgcatggt tatgccgata aggggtctgt gcataacttt
     1801 ctaagacgga aaactcccgc gcgcccatca tagcgcaaaa ccttcgcgcg cgcccgcgcg
     1861 ccggggccgc ccgcttgact ccctccactt cactttctat agtgcttttc tcgcgatgaa
     1921 acgctccgcc ccagcaattc gaagcaccac catcctgcta gtgcgccgcg gcgcgaacgt
     1981 cgcgctagcg ggcgacgggc aggtcacgct cggcgacaca gtcatgaaga gcggcgcgcg
     2041 gaaggttcgg cgcctctaca acgacaagat tctcgcgggc ttcgcgggca ctagcgccga
     2101 cgccttctcg ctgctcgcgc gcttcgagtc gaagctcgaa cagtaccacg gcaacctcga
     2161 gcgcgcggcc atagagctca gcaaggagtg gcgcaccgac aagattctgc gccacctcga
     2221 agccatgctc atcgtcgccg acgagaagtc ttcgttcctc ctctcaggca acggcgacgt
     2281 gatcgcgccc gacggcggag tgctcgcaat cggctcgggc ggcccctacg ctctggcggc
     2341 cgcgcgcgcc ctcgtcgagc acaccgagat gagcgcccgc gagatcgcgg gcgaggccct
     2401 caagctcgcg ggcgaaatct gtatctactc caaccagaac atcatcatcg aggagattta
     2461 aagcgccctc cctttcgtta tggtgattta cctttcaggc gaggttgacg acgaggcgcg
     2521 tctcgacgag atgacgcccc gccagatcgt tgccgagctc gacaagttcg tggtcggaca
     2581 gcacgccgcc aagcgcgccg tcgccatcgc cctgcgcaac cgcgtgcgac ggcagaagct
     2641 cccgcccgag atggcggccg acgtgatgcc caagaacatc atcatgatcg gctctaccgg
     2701 cgtcggcaag accgagatag cacgccgcct cgcgcgcatg tccaactcgc ccttcatcaa
     2761 gatagaggcg tcgaagttca cggaggtcgg ctacgtgggc cgcgacgtgg agagcatgat
     2821 acgcgacctg accgagatag ccgtggacat ggttcgcgaa gagaggctcg acgaggtcgc
     2881 cgacaaggcc gagcacaacg cggaggagcg cctcctggac ctcctgctcc cgccacgccc
     2941 ctcttccggc ttctacaact tcgacgcaga ggacgacgaa gacacgtcct cggccgccgc
     3001 acccgcgggc gccgagcgcg acgaccagtc ccagaagacg cgcgagaagc tgcgcgcgca
     3061 gctcagggac gggaagctcg acaaccggct ggtggagatg gaggtgcgcg agaagagctt
     3121 cccgaccata gaggtcgccg gcccgcaggg cgtcgaggag atgggcatca acatgaaaga
     3181 catgctcggc aacctcttcc aggggcgcac caaacgccag cgcatgcgcg tgcgcgaggc
     3241 gctcgagtac ctcgtgcagg aggaggagga gagcctcgtt gacatggacg ccgtcgcgcg
     3301 gcaggccctc gaacggcttg agacctccgg cataatcttc ctcgacgaga tagacaagat
     3361 agcgggccgc gagcaggggt ccgggccgga cgtttcgcgc gagggcgtcc agcgcgacct
     3421 tctgcccatc gtcgaaggca cgaccgtcaa cacgcgctac ggcatggtgc gcacagacca
     3481 cgtgctattc atcgccgcgg gcgccttcca cgtctcgaag ccttccgact tgataccgga
     3541 gcttcagggc cgcttcccca tccgggtcga gctcgactcg ctcacgctcg aagacttcaa
     3601 gcgcatactg accgagccca agaactcgct cgtcaaacag taccgcgcgc tactagagac
     3661 cgagggcata gacctggagt tcacggaaga gggcgttgac gccttagcgc gcttcgccgt
     3721 ccgcgtcaac gagcagaccg agaacattgg cgcccgccgc ctgcatacca tcatggagaa
     3781 ggtcttggac gagataagct tcctcggccc ggacctcgag cccaagcggc aggtcataga
     3841 cgccgactac gtcaaccgca cgctcgcaga aatcgtcaaa gaccaggacc tcagccgcta
     3901 cgtcttatga agaagccaca aggcagaagc cgcagggcgg atggcgcgag gcacaaaaga
     3961 ccgtttctgc ccgccttctg ccttctgctt tctgccgtct ttctattcac agcgtgcggc
     4021 aaacgccgtc cgcctctccc ccccgtcgag cgcgtcccgc agaggacgga gctgctatcg
     4081 ggcgtgcagc gcggcaaccg tgtgatcctt agctggcccg ccccccgccg caacgcctcc
     4141 gactcgagcg tgcagagcat acgccgcgtt gacgttttcc ggctcgccga gtcagccgac
     4201 gacccgctcg cgctcacaga ggaggagttc tcctcgcgcg ccacactcat cggctcagtc
     4261 ccgttcgaga gcgccggggc gcccggcgaa accctcacct acgttgacga gctagcgctc
     4321 ggcgagcccg tgaggctccg ctacgccgtg cgctacgtaa acgcttcggg gcagcgcgcc
     4381 tccttctcga acttcctgat aatcgagccc gcgccgagcg taagcctccc gcccgcgctc
     4441 gccccacagg ccgaggtctc gcagaacgcc gtcacgctcc gttggcagcc gcccgaggcg
     4501 aacgttgacg gcacacgacc cgcgaacatt ctcggctaca acgtctatcg cgccacgcgc
     4561 gcacagaacg agcccgcgca gactccccta aacccggagc ctttgacggc gacgcgcttc
     4621 gacgaccaga ccttcaagtt cggcgaggag cacacttacg tcgtccgcgc agtctccctc
     4681 ggcacgggcg gcgaccccgt cgagagcctc aactcgaacg ccctgacggt cttgcccgtt
     4741 gacaccttcc ccccttcccc ccccgccggc ctgaccgccg cctcctcgcc ctctcccctt
     4801 cgcatctcga tcttcttcgc cgcgagcccc gagcgcgacg tggccggcta caacctctac
     4861 cgctcgaacg accccggcct ccccaaagaa cgctgggcga agctcaatcg ctcgcccctc
     4921 gaccgcacga cgttccagga cgaaggcgtg gagtcgggcg tgaagtattt ctactacgcg
     4981 accgccgttg acacggccgg caacgtgagc cagccttcgg aagttgtctc ggagacagcg
     5041 ccttaaacct tatgaagatt tgccgcttcg tccaccccga aacacagtcg ccgagctacg
     5101 gcatcgtcga gggggattcc gtgcacgccc tctcgggcga gctctccgac ggcaacctct
     5161 cgctggaaga caggggggcc gccttcccgc ttacgaccgt gcgaacactt cccccggtca
     5221 tgccctcgaa aatcgtctgc gtcggccgaa actatcgcgc tcacgccgaa gagctcggca
     5281 acccaatgcc cgccgagccg ctcctcttct tgaaggcccc ctccgcaatc atcggcgacg
     5341 gcgactcaat cctcctcccc gaagtttcag aaagagtaga gcacgaaggc gaactcgccg
     5401 tcgttatcgg acgctcggcg aaaaaacttt ccgactccga cgaccccttc gcgcacatcc
     5461 tcggctacac atgcctcaac gacgtgacgg cgcgcgacct tcagcgcaag gacgtgcagt
     5521 tcacgcgcgc caaatccttc gacaccttct gccccgtcgg cccttacgtc gtcacggggc
     5581 ttgaccctct tgaccttaag gtcgagaccc gcgtcaacgg cgaagtgcgc cagagcggcc
     5641 ggacgagcgc gatggccttc gcagtcccct tccttgtccg ctacatttcc cgcgtgatga
     5701 ctctggagcc gggggacttg atcgcgacgg gaacgcccgc cggcgtgggc cccctgcgtg
     5761 acggcgacac ggtcgaggtc gaagtcgagg gcgtcggcgc gctccgcaac gacgtgcgct
     5821 cggcctcgcg ctgaaggcag ggtctttgtc ttcgaagggt ttcacacaga cggaaatcgt
     5881 cgtctccgcc caggagcttt ccaaaaatta cggagaccgg gcggcggttg accgcgtgcg
     5941 cttcgaggtt cgaaggggcg agaccttcgg gctgctcggc ccgaacggcg ccgggaagtc
     6001 aacgacgatg cgcatgatcg cgtgccgcac gacgccaacg gcaggg
//
LOCUS       DASPKR010000098         3462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_10875, whole genome shotgun sequence.
ACCESSION   DASPKR010000098 DASPKR010000000
VERSION     DASPKR010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3462)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3462
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10875"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..355
                     /locus_tag="VD968_02885"
     CDS             <1..355
                     /locus_tag="VD968_02885"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE13369.1"
                     /translation="HLGAHGQLQGLGAHWELWMLQQGGLTNLEALRAATLHGAQYLGL
                     DGELGSIEPGKLADFAIFDRNPLANIRNSETVSLVMINGVLYSTENMDEIYPQQRPRQ
                     PFFWERREEPPRAQQ"
     gene            complement(415..627)
                     /locus_tag="VD968_02890"
     CDS             complement(415..627)
                     /locus_tag="VD968_02890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13370.1"
                     /translation="MAGQEGAGRESFPKRESTGEGSNSGNAGEGEAQTGEGGEGGYGE
                     GRTQDNMAGQGTGQIGGPYGDRETER"
     gene            complement(718..1746)
                     /locus_tag="VD968_02895"
     CDS             complement(718..1746)
                     /locus_tag="VD968_02895"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HYE13371.1"
                     /translation="MTTTLTFVIIIILVALIFDYINGFHDAANSIATVVSTRVLSPGA
                     AVVWAAFFNFIAFLVLGEAVAKTIGKDMVDIKAIPGDWQLWVLLCGLIGAITWNLITW
                     YYGIPSSSSHALVGGYAGAAIAAAGFGVILPSGWTKTVIFIVLSPLIGALLGFAIMVT
                     VMWAFRFWAPHRVDKVFRKGQLISAALFSLGHGGNDAQKTMGIIVGVLVASNIDPHAT
                     HDIPLWVVLICHAAIGLGTLSGGWRIVHTMGSRITKLKPVGGFSAESAAALSIIGVTL
                     GGIPVSTTHTITGAIVGVGATRRLSAVKWGVASRIVWAWVLTIPLSAAIAALSFALYR
                     AASGLGSS"
     gene            complement(1768..2391)
                     /locus_tag="VD968_02900"
     CDS             complement(1768..2391)
                     /locus_tag="VD968_02900"
                     /inference="COORDINATES: protein motif:HMM:NF013982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HYE13372.1"
                     /translation="MPRFSLIPKEEQYFALFRQMTSYIFDASRSLTELLDSPPGDRPK
                     HLTHIKSIEHACDELIHSIVTKLNSSFITPFDREDIYMLSGALDDIVDLMDDAARSLV
                     MYNVEETTEYARQFGDVLQRMAVQLHEVVASLERPSGMAERLVEIHRLENEGDDLYHE
                     AIGELFKGTPDPLYVIKWKEIYEKLEGAVDRCERAANIIESVIIKHA"
     gene            2566..3195
                     /locus_tag="VD968_02905"
     CDS             2566..3195
                     /locus_tag="VD968_02905"
                     /inference="COORDINATES: protein motif:HMM:TIGR00393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HYE13373.1"
                     /translation="MSESHFGQVAGLLLMESEAVAQAARRLDPAEVERAVSLLSACRG
                     KVVLVGVGKSGNVAQKIAATLTSTGTVSVFLHPSDALHGGIGLVAADDVVVVLSNSGE
                     TAEIVELLPYLQHRRAPVVAIVGNTDSTLARRADVVLDASVEQEACPLNLAPTTSTTV
                     ALAVGDALAMTLMRVKRLTPEDFALNHPGGRLGKRLTLKVSDLMHGGGE"
     gene            3214..3462
                     /locus_tag="VD968_02910"
                     /pseudo
     CDS             3214..3462
                     /locus_tag="VD968_02910"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
BASE COUNT          617 a         1100 c         1159 g          586 t
ORIGIN      
        1 gcacctcggc gcgcacgggc agttgcaggg cctgggcgcg cactgggagc tctggatgct
       61 tcaacagggc gggctgacta acttggaggc gctcagggcg gcgacgctgc acggcgcgca
      121 gtaccttggg ttggacggag aactcggctc catagagccg ggcaagctgg cggacttcgc
      181 tatattcgac cgcaaccctc tcgccaacat acgcaacagc gagaccgtca gcctcgtcat
      241 gataaacggc gtactctact cgacggagaa catggacgag atttacccgc agcagcggcc
      301 gcgccagccc ttcttctggg agcgccgcga agagccgccc cgcgctcagc agtaaaacag
      361 tagaaggcag aaggcagtca ggaagatttc ctctactgcc ttctgccttc tttactatct
      421 ctccgtctcc cggtcgccgt aggggccgcc tatctggccc gtgccttggc cggccatgtt
      481 gtcctgcgtg cggccctcgc cgtagccgcc ctcgccgcct tcgcccgtct gagcctcgcc
      541 ctcgcccgcg ttgccggagt tgctgccctc gccggttgac tcgcgcttcg ggaagctctc
      601 gcgccccgcg ccctcctgtc ctgccatagc ctctgcctcc tagccttttg gttttacgac
      661 gtaccgtatg cgtgcgcggt gacgcgccgc tggaggtgaa ggggcaaggg gcgtgcctca
      721 ggatgagccg aggccgctgg cggcgcggta gagggcgaag gagagcgcgg cgattgcggc
      781 cgagaggggg atggtaagaa cccacgccca cacgatgcgg ctggcgacgc cccacttgac
      841 ggccgacagg cgccgcgtgg ccccgacgcc gacgattgcg cccgttatgg tgtgggtggt
      901 cgagacaggt atgccgccga gcgtgacgcc gatgatggag agcgcggcgg ccgactcggc
      961 gctgaagccg ccaacgggct tgagcttagt gatgcgcgag cccatcgtgt ggacgatgcg
     1021 ccagccgccc gagagagtcc ccaagccgat ggcggcgtgg cagatgagca cgacccatag
     1081 cggtatgtcg tgcgtcgcgt gcgggtcaat gttcgaggcg acgagcacgc ccactatgat
     1141 gcccatcgtc ttctgcgcgt cgttgccgcc gtggccgagg ctgaagagcg cggccgagat
     1201 tagctgcccc ttgcggaaga ctttgtccac gcggtgcggc gcccagaaac ggaacgccca
     1261 catcaccgtc accattatcg caaaccccag cagcgcgccg atgagcggcg agagcacgat
     1321 gaagatgacc gtcttggtcc agcccgaggg gagtatcacg ccgaagcccg cggcggcgat
     1381 ggccgcgccc gcgtagccac ccacgagcgc gtgcgaagag ctcgaaggta tgccgtaata
     1441 ccatgtgatg aggttccatg ttattgcgcc tatcagcccg cacaaaagca cccacagctg
     1501 ccagtcgccg ggtatcgcct ttatgtccac catgtccttg ccgatggtct tggcgacggc
     1561 ctcgccgagc acgaggaagg cgatgaagtt gaagaaggcg gcccagacga cggccgcgcc
     1621 cggcgagagg acgcgcgtcg agacgacggt cgcaatcgag ttcgccgcgt cgtggaaccc
     1681 gttgatgtag tcgaagatga gcgcgaccag aatgatgatg atgacgaagg tcagcgtggt
     1741 tgtcataaga ggtgccgggc gctcgtctca ggcgtgcttg atgatgacgc tctcgatgat
     1801 gttggcggcg cgctcgcagc ggtcaaccgc cccctcaagc ttctcgtaaa tctccttcca
     1861 cttgatgacg tagagcgggt cgggcgtccc cttgaagagc tcgccgatgg cctcgtggta
     1921 gaggtcgtcg ccctcgttct cgaggcggtg aatctcgacg agccgctccg ccatccccga
     1981 cggccgctca agcgacgcca cgacctcgtg gagctgcacg gccatgcgct gaagcacgtc
     2041 gccgaactgg cgcgcgtact cggtcgtctc ctcgacgttg tacatgacga gcgagcgggc
     2101 ggcgtcgtcc atgaggtcaa cgatgtcgtc gagcgcgccc gagagcatgt atatgtcctc
     2161 gcggtcgaag ggcgtgatga aggacgagtt gagcttggta acaatggagt gtatcagctc
     2221 gtcgcacgca tgctcgattg acttgatgtg cgtgaggtgc ttgggcctgt cgcccggggg
     2281 gctgtcgaga agctcggtga gcgagcgcga cgcgtcgaag atgtaggagg tcatctgccg
     2341 gaagagggcg aagtactgct cctccttcgg tatcaggctg aagcgtggca tgaagggctt
     2401 tccccctgac ctgtcggttt ttatgaaaga gaagctgaaa tatagacgaa tgcctgagcg
     2461 ttgtctatac gcgggccgaa ctcgaaatta aatcgccgcc gaatcacaga gcgggcgcgc
     2521 gcccgccttg catcatcgcc cgcgaacgtt tttaatcgta gtccgatgag cgaatcgcac
     2581 ttcgggcagg tcgcgggcct gctccttatg gaatcagaag ccgtagcgca ggcggcacgg
     2641 cggctcgacc ccgcggaggt cgagcgagcc gtctcgctgc tctcggcctg ccgcggcaag
     2701 gtcgtgctcg tcggcgtggg caagtccggc aacgtcgccc agaagatagc cgcgacgctg
     2761 acgagcacgg gcaccgtctc ggtcttcctg cacccctcgg acgcgctgca cggcggcatc
     2821 ggcctcgtcg cggccgatga cgtggtcgtc gtgctcagca acagcggcga gacggccgag
     2881 atagtcgagc ttctgccata cctacagcac cgccgagcgc ccgtagtggc aatcgtcggc
     2941 aacaccgact ccacgctcgc gcggcgagcc gacgtggtgc tcgacgcctc ggtcgagcag
     3001 gaggcctgcc ccctgaacct cgcgccgacg acgagcacga cggtcgcgct cgccgtcggc
     3061 gacgccctgg cgatgaccct gatgcgggtc aagcggctga cgccggagga cttcgcgctg
     3121 aaccatccgg gcgggcgtct gggcaagcgg ctgacgctca aggtctcaga cctgatgcac
     3181 ggcggcggcg agtgaccgaa cgtctcggcc gacgcgccgc tcttagaagt cgtgcgcgag
     3241 atcagccggg gcggcctggg cgcggtcaac gtcacggacg cgtcgggccg actggtcggc
     3301 atcatcacgg acggcgacgt gcggaggact ttgcagacgg cgaacctctc ggaactcgac
     3361 aagctcaaga gcggggcgat gatgacgcac aaccccgtcg tcgtccaacc cgagatgctc
     3421 gcgcacgccg cgctccaatt gatggagaac cggccgtcgc aa
//
LOCUS       DASPKR010000099         2568 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_141253, whole genome shotgun sequence.
ACCESSION   DASPKR010000099 DASPKR010000000
VERSION     DASPKR010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2568)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_141253"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1174)
                     /locus_tag="VD968_02915"
     CDS             complement(<1..1174)
                     /locus_tag="VD968_02915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HYE13374.1"
                     /translation="MLSPGVGATAQTGDEGLVDPPPLIISEFRLSGPGGDLDEFIEIY
                     NNSNAALTVNAPDGSSGFALVASDGLARFLIPNGTVIPARGHFLGVNSVGYSLASYAA
                     GNGATAAGDAAYTEDIPENAGLALFATSDPANFDYGWRLDAAGSDEEADPLYREGAGY
                     PSLFFSRLESSFTRRLCSAPMTCTGFPRDTNDNAADFIFVDTMHHSAGAGARLGAPGP
                     EGLSSPIRRAGSGLSASLLDPLVDAHTSPNFFRDRAFTGDYNAAFGTVSFRRAFTNNT
                     GASITALRFRVADITTAVQPYEIGDLRPRSSGAVTVTLSDGSTANVQGTSREEPPAQD
                     GRGGGFNTSLSVGTINLASPLAPGESVNLQLVAGVEQTGDFRLCVTVETLPATGSEV"
     gene            complement(1562..>2568)
                     /gene="lpxB"
                     /locus_tag="VD968_02920"
     CDS             complement(1562..>2568)
                     /gene="lpxB"
                     /locus_tag="VD968_02920"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: protein motif:HMM:TIGR00215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HYE13375.1"
                     /translation="AITGLVEIGRALPRFMSAYRALKRAAVERRPDAVILVDWPDFNL
                     PLARALRRRGLRVIYYISPQLWAWRSYRARQVRRDVDLMLTILPFERDWYAARGVTQV
                     EFVGHPFAGSARPRYGREEFCARNGLDASRAVVALLPGSRRKEFERHLPLMLDAAARV
                     ARERDGTQFVVALASRRSPEEAARVISASPHAPTLGGRLSVSRHESREALASADAAAV
                     CSGTATLEAAVVGTPLVVVYKESVLNWHTLGRLINVEHYGLVNLIAGRRVAPELIQND
                     FTGERLARELLGLLDPGRNARAREQLREAAARLGEGGASRRAADAVIRAVRRWRAERS
                     "
BASE COUNT          389 a          821 c          986 g          372 t
ORIGIN      
        1 gcacttcgga gccggtggcc gggagcgtct ccacggtcac gcagaggcgg aagtcgcccg
       61 tctgctcgac gcccgcgacg agttgcaggt tgacgctctc gccgggcgcg agcggcgacg
      121 cgaggttgat tgtgcctacc gagagcgagg tgttgaagcc gccgccgcgg ccgtcctgcg
      181 cgggcggctc ttcgcgcgac gtgccctgca cgttcgccgt gctcccgtcg gagagcgtca
      241 cggtgacggc cccggagctg cgcgggcgca ggtcgcctat ttcgtacggc tggacggcgg
      301 tggttatgtc ggccacgcgg aagcgcagcg ccgtgatgct ggccccagtg ttgttggtga
      361 aggcgcggcg gaagctgacg gtgccgaagg cggcattgta gtcgccggtg aaggcgcggt
      421 cgcggaagaa gttcggggaa gtgtgggcgt caacgagcgg gtcgaggagc gatgcggaga
      481 gcccggagcc cgcgcgcctt atggggctcg acagcccttc aggccccgga gcgccgagcc
      541 tcgcgccggc gcccgcgctg tggtgcatcg tgtcaacgaa gatgaagtcg gcggcgttgt
      601 cgttcgtgtc gcgcgggaac cccgtacagg tcatgggcgc ggagcagagc ctgcgcgtga
      661 agctgctctc cagccggctg aagaagagcg aagggtagcc ggcgccctcc ctgtagagcg
      721 ggtcggcttc ttcgtcggag ccggccgcgt cgagccgcca gccgtagtcg aagttggccg
      781 ggtcggacgt ggcgaagagc gccagccccg cgttctccgg gatgtcttcg gtgtaggcgg
      841 cgtcgcccgc ggcggtcgcg ccgttgcccg cggcgtagga ggccagcgag tagccgacgg
      901 agtttacgcc gaggaagtgg cctcgcgccg ggataaccgt gccgttcggg atgaggaagc
      961 gcgccaagcc gtccgaggcg acgagcgcga agccggatga gccgtccggc gcgttgacgg
     1021 tcagggccgc gttcgagttg ttgtagattt cgatgaactc gtcgaggtct ccgccggggc
     1081 cgctcaggcg gaactccgag atgatgagcg gcggcgggtc aaccagtcct tcgtcgcctg
     1141 tctgggccgt ggcgccgacg cccggcgaga gcaagaaaag gagcgctaga gtgagaagtt
     1201 tcgcggggcg cgaacgagag acgaaaagca ttgttccctc ctggatgaat ctggccgcct
     1261 cggcaaggcg gacgaatggg cttcggcggg gagccacatt gagcctgacg aaccaacacg
     1321 acggccgcga cctcccgccg ccgcgccaaa ggcaggcggg ccgcggccgg gccgaggtca
     1381 tgcctcgggc gtcgggaatt tagaccgtta gttgctcaga ccggagagat gcttgcttga
     1441 cagagaccgg gaagcgtccg agccgcgagt tagattgttc tcgggggtgc gaacatttta
     1501 gccgacgcgc gggcgttgtc aaccggaaat tgccccggcc ggacggccgg gcggcccggg
     1561 cctaagacct ctcggcgcgc cagcgcctga cggcgcggat gacggcgtcg gctgcgcgtc
     1621 gggaggcgcc gccctcgccg aggcgtgcgg ccgcctcgcg gagttgctcg cgcgcgcgcg
     1681 cgttgcgccc ggggtctagg agcccgagca gttcgcgcgc gaggcgctcg cccgtgaagt
     1741 cgttctgtat aagctcaggc gcaacgcgcc tgcccgcgat gaggttcacg agcccgtagt
     1801 gctcgacgtt tatcagccgg ccgagcgtgt gccagttgag caccgactcc ttatagacga
     1861 cgacgagggg cgtgccgacg accgcggcct cgagcgtcgc cgtgccgctg cacacggccg
     1921 ccgcgtcggc cgaagcgagc gcctcgcgcg actcgtgtcg cgacacactg agccgccctc
     1981 cgagtgtcgg ggcgtgcggg ctcgccgaga ttacgcgggc ggcctcctcg ggcgagcggc
     2041 gtgaggcgag cgcgacgacg aactgtgtgc cgtcacgttc gcgcgccacg cgcgccgcgg
     2101 cgtcgagcat cagcggcagg tggcgctcga actccttgcg gcggctgccc ggcaggagcg
     2161 cgacgaccgc gcgcgaggcg tccaggccgt tgcgcgcgca gaactcctcg cggccgtagc
     2221 gcggccgcgc cgagcccgcg aacgggtggc ccacgaactc gacttgcgtg acgccgcgcg
     2281 cggcgtacca gtcgcgctcg aaggggagga tggtgagcat caggtcaacg tcgcggcgaa
     2341 cctgccgcgc gcggtacgag cgccaggccc agagctgcgg gcttatgtag tagatgacgc
     2401 gcaggccccg gcggcgcagg gcgcgagcga gcggcaggtt aaagtcgggc cagtcaacga
     2461 gaattactgc gtcggggcgg cgctcgaccg cggcgcgctt gagcgcccgg taagccgaca
     2521 tgaaccgtgg cagcgcgcgg cctatttcaa cgagccccgt tatcgcca
//
LOCUS       DASPKR010000100         4317 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1435421, whole genome shotgun sequence.
ACCESSION   DASPKR010000100 DASPKR010000000
VERSION     DASPKR010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4317)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4317
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1435421"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..638
                     /locus_tag="VD968_02925"
     CDS             <1..638
                     /locus_tag="VD968_02925"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYE13376.1"
                     /translation="ARSARVRSLLEEVRAIPEGARVLEVGSGAHGLVFYFGAGRGVGV
                     DPLACDYAVLFPAWQRRALTIAAAGEALPFADSSFDVVLCDNVIDHAERPGKIVKELA
                     RVLAPAGLLYFTVNVHHAIYSAAAAAHAAWNAAGLRFEIGPFADHTVHLTPAAARRLF
                     DGLPLRIISERDDIADAKAAARRGRPRHAGDRLKRLFFKNATYEVIAEKRG"
     gene            714..1424
                     /locus_tag="VD968_02930"
     CDS             714..1424
                     /locus_tag="VD968_02930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13377.1"
                     /translation="MGKGETVGGRGAAKGARPEGAARCRRKFLRYFPGGFRSEKYVEW
                     ERGYKWETHERWEEALNQVEFRRLLRDGEFAEVAARAVRVEQRSRYSMIFSFEKMALR
                     DAVKTDDGARSFAEGLYDFLHGAGGAERKFERWVEVVASLPRRQTRVLTWPLVTVFGF
                     IAQPQTHIFLKPTVTRRAAEAYGFDFRYKSRPSWETYASLLEFAEAIRRDQRDLRPRD
                     MIDLQSFIWVQGSDEYPD"
     gene            complement(1435..3066)
                     /locus_tag="VD968_02935"
     CDS             complement(1435..3066)
                     /locus_tag="VD968_02935"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE13378.1"
                     /translation="MNRRELLAAFLGVPVALATCGRGEKAEALPEGEVVGASEGLGHM
                     LRGGLKIEPAPDAWESAGVVVVGGGVAGLAAAWRLLKAGVEDFVLLELEREAGGTSRG
                     GERHGVVPYPWGAHYLPAPLKENRALVLLLGEMGVLEGVDEEGEPVVAEQFLCRDPEE
                     RVFYRGRWYEGLYLHAGESGEEARQLAAFNAEVDRWAAWRDARGRRAFSIPVSSSSDD
                     AEAAALDRVSMAEWMRSKGLTSARLRWLVDYSCRDDYGLTVEQTSAWAGLFYFASRMK
                     AEGAEAQPLITWPEGNARLVRHLREAAGARVRLGLAASDVRPTDEGVEVVAVGHDGRE
                     ARGFRARHCIFAAPQFVARHVLRPYREQPPPHLAEFEYGAWMVANLFLEDRPRQGLGF
                     PLAWDNVLYESPSLGYVVATHQRGLDRGPTVFTYYYPLTDDDPRAARERLLSTGRDGW
                     AEVALSDLRRAHADIRRLTRRLDVMRWGHAMVRPRPGFIWGGARAAAQRPHRSVHFAH
                     TDLSGVALFEEAFDQGLRAAEEVLKLRGVSSESLR"
     gene            complement(3059..>4317)
                     /locus_tag="VD968_02940"
     CDS             complement(3059..>4317)
                     /locus_tag="VD968_02940"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: protein motif:HMM:NF002956.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HYE13379.1"
                     /translation="LFLTFAHLSYFQLVLYSTVFLIGALVGLEIPLLMRILKDHLDFK
                     ELVARVLAFDYVGALVASLLFPIFLVPKLGLVRTSLLFGILNAAVGLWATWLMRPLIK
                     GSVSRLRAQACVVIAVLAVCLIKADALTSLAEDAMFADDIVYSRTTHYQRIVVTQGRA
                     GFQLFLNGNLQFSSADEYRYHEALVHPAMALAGEGGRAVRRVLVLGGGDGLAVREVLR
                     HPSVEHVTLVDLDPDMTELSRRFPPLAELNGRAFDDPRVRVVNEDAMLWLERDEPPFD
                     AAVIDFPDPNTFALGKLYTTRFYRMLRERLAPGAAVSVQCTSPLFARASFWCIVRTME
                     AAGLAVRAYHAAVPSFGVWGFALARSEPFEPPATAPPGLRFLDDSAMRAMFVLPRDLG
                     PVPVEINRLDNQSLVRYYEAEWRLYE"
BASE COUNT          704 a         1484 c         1525 g          604 t
ORIGIN      
        1 gggcgcgctc cgcccgcgtg cgttcgctgc tcgaagaggt gcgggccatc ccggaaggcg
       61 cgcgcgtgct cgaagtcggg agcggcgcgc acggcctcgt cttctacttc ggcgcgggcc
      121 gaggcgtggg cgttgacccg ctagcgtgcg actacgcggt gctcttcccc gcgtggcagc
      181 gacgcgcgct gacaatcgcc gccgcgggcg aggccctacc cttcgcagac tcctccttcg
      241 acgttgtgct ctgcgacaac gtcatagacc acgccgagcg gcccgggaag atagtcaaag
      301 agctcgcgcg cgtgctcgcg cccgcggggc tgctctactt cacggtcaac gtccaccacg
      361 cgatctattc ggcggccgcg gcggcgcacg ccgcctggaa cgccgccggc ctgcgcttcg
      421 agataggccc cttcgcagac cacaccgtcc acctcacgcc cgcggccgcg cgccgacttt
      481 tcgacggcct cccccttcgc ataatcagcg agcgcgacga catcgctgac gccaaagccg
      541 ccgcccgccg cggccggccg cgccacgcgg gcgaccgcct caaaagactc ttcttcaaaa
      601 acgcgaccta cgaagtcata gccgagaagc gcggctgaaa actgttctgg caaaagcgcc
      661 ggccgggagt attatcctgt gacgagatca actgtcacgg gaggtcgggc gtcatgggca
      721 aaggcgagac tgtgggcggc cgcggggcgg cgaagggggc gcggcctgag ggcgcggcgc
      781 gttgccgcag gaagtttttg cgctacttcc ccggagggtt ccgctcggag aagtacgtcg
      841 agtgggagcg cggctacaag tgggagactc acgagcgatg ggaggaggcg ctcaaccagg
      901 tcgagttccg caggctcctg cgcgacggcg agttcgccga ggtcgccgcc cgcgccgtcc
      961 gcgtcgagca gcgcagccgc tacagcatga tcttctcctt cgagaagatg gcgctgcgcg
     1021 acgccgttaa gaccgacgac ggcgcgcgct cattcgccga agggctctac gacttcctgc
     1081 acggcgccgg gggcgccgag cggaagttcg agcgctgggt cgaggtggtg gccagcctcc
     1141 cgcgccgcca gacgcgcgtg ctcacgtggc ctctcgtcac cgtcttcggc ttcatcgccc
     1201 agccgcagac tcacatcttc ctcaagccga ccgtcacgcg cagggcggcc gaggcttacg
     1261 gcttcgactt ccgctacaag tcgcgcccct cctgggagac ctacgcgagc ctgctggagt
     1321 tcgccgaggc catccgccgc gaccagcgcg accttcgccc gcgcgacatg attgaccttc
     1381 agtccttcat atgggttcag ggctcggacg agtacccgga ctaagacggt tccctcacct
     1441 gagactttcg gaagagacgc cgcgaagctt caggacttct tccgccgcgc ggaggccctg
     1501 gtcgaaagcc tcctcgaaga gcgcgacgcc ggagaggtct gtgtgcgcga agtggacgga
     1561 gcggtggggg cgctgcgcag cggcgcgggc gccgccccat atgaagccgg ggcgcgggcg
     1621 caccatcgcg tggccccagc gcatcacgtc gagccgtcgc gtgaggcggc gaatgtctgc
     1681 gtgcgcgcgc cgcaagtccg agagggcgac ttcggcccag ccgtcccggc cggtcgagag
     1741 caggcgctcg cgcgccgcgc gcgggtcgtc gtcggtgagc gggtagtagt aggtgaagac
     1801 ggtggggcct cggtcgagcc cgcgctggtg cgtggcgacg acgtagccga gcgaggggct
     1861 ctcgtagagc acgttgtccc aagcgagcgg gaagcctaag ccctgccggg gcctgtcttc
     1921 gaggaagagg ttcgcgacca tccacgcgcc gtactcgaac tccgcgaggt gcggcggcgg
     1981 ctgttcgcgg tagggccgga ggacgtggcg cgcgacgaac tgcggcgcgg cgaagatgca
     2041 gtggcgtgcg cggaagccgc gggcctctcg cccgtcgtgg ccgacggcca cgacctcgac
     2101 gccttcgtcg gtcggccgca cgtccgaggc ggcgagcccg agccgcacgc gcgcgcccgc
     2161 cgcctcgcgc aggtggcgca cgagtcgcgc gttcccttcc ggccaggtga tgagcggctg
     2221 cgcctccgcc ccttccgcct tcatgcgcga ggcgaagtag aagaggccgg cccacgcgct
     2281 cgtctgctcg acggtgagcc cgtagtcgtc gcggcaggag tagtcaacga gccaccgcag
     2341 ccgcgccgaa gtcaacccct tcgagcgcat ccactcggcc atcgagacgc ggtcgagcgc
     2401 cgcggcctcc gcgtcgtccg aagacgagga gacggggatg gagaatgcgc ggcggccgcg
     2461 cgcgtcgcgc caggcggccc aacggtcaac ctcggcgttg aaggccgcga gctgtcgcgc
     2521 ctcctccccc gactcgcccg cgtgcaggta gagcccctca taccagcggc cgcggtagaa
     2581 gactcgctcc tctgggtcgc ggcagaggaa ctgctccgcg actacgggct cgccctcttc
     2641 gtccacgcct tcgagcacgc ccatctcgcc gagcaggagg acgagcgccc ggttctcctt
     2701 cagcggcgcc ggcaggtaat gcgcgcccca cgggtacgga acgacgccgt ggcgctcacc
     2761 cccgcgagaa gtgccgcccg cctcgcgctc taattcgagc aggacgaaat cctctacccc
     2821 ggctttcaaa agtctccacg ccgccgcaag gcccgccacg ccgccgccca cgacgacgac
     2881 gcccgcgctc tcccaggcgt cgggcgcggg ctcaatcttc agcccgcctc tcagcatgtg
     2941 gccgagccct tcggaggcgc cgaccacctc gccttcgggc agcgcctctg ccttctcccc
     3001 gcgcccgcac gtcgcgagcg ctacgggcac gccgaggaag gcggcgagca gctcgcgcct
     3061 attcatagag tctccactcg gcctcgtagt agcggacgag cgactggttg tcgaggcggt
     3121 ttatctccac ggggacgggg ccgaggtcgc ggggcaggac gaacatggcg cgcatggcgg
     3181 agtcgtcgag gaagcgcagg cccggcgggg ccgttgcggg cggctcgaag ggctcgctgc
     3241 gcgcgagcgc gaatccccag acgccgaagg aaggcacggc cgcgtggtat gcgcgcaccg
     3301 cgaggcccgc ggcctccatc gtgcggacga tgcaccagaa cgaggcgcgg gcgaacagcg
     3361 gcgacgtgca ctgcacggag acggcggcgc cgggcgcgag ccgctcgcgc agcatgcggt
     3421 agaagcgcgt cgtgtagagc ttgccgaggg cgaaggtgtt cgggtcgggg aagtcaatca
     3481 ccgcggcgtc gaagggcggc tcgtctcttt cgagccagag catcgcgtct tcgttgacga
     3541 cgcggacgcg cgggtcgtcg aaggcgcgcc cgttaagctc ggcgagcggc gggaagcggc
     3601 gcgaaagctc cgtcatgtcg gggtcgaggt caacgagcgt gacgtgctcg accgaagggt
     3661 gcctgagaac ctctcgcacg gcgaggccgt cgccgccgcc cagcacgagc acgcggcgca
     3721 ctgcgcggcc gccctcgccc gccagagcca tcgccgggtg gacgagcgcc tcatggtagc
     3781 ggtactcgtc cgcggagctg aactgaaggt tgccgttcag gaagagctgg aagccggcgc
     3841 gaccctgcgt gacgacgatg cgctggtagt gcgtcgtcct ggaatagacg atgtcgtcgg
     3901 cgaacatcgc gtcctcggct agcgaggtca gagcgtcggc ctttatcaaa cagacggcca
     3961 gcacggctat caccacgcaa gcctgcgcgc gcagccgcga cacgctgccc ttaatcagcg
     4021 gccgcatcag ccacgtcgcc cagaggccca cggcggcgtt cagtatcccg aagagtagag
     4081 aggttcgcac gagccccagc ttcggcacga ggaagatggg gaagagcagc gaggcgacga
     4141 gcgcgccgac gtagtcgaag gcgaggacgc gcgcgaccag ctccttgaaa tcgaggtggt
     4201 cttttagtat ccgcatcagg agcgggattt cgagcccgac gagcgcgccg atcagaaaga
     4261 ccgtcgagta gaggacgagc tggaagtagc tcaggtgcgc gaaggtgagg aacagta
//
LOCUS       DASPKR010000101         6458 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_399921, whole genome shotgun sequence.
ACCESSION   DASPKR010000101 DASPKR010000000
VERSION     DASPKR010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6458)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6458
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399921"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..665)
                     /locus_tag="VD968_02945"
     CDS             complement(<1..665)
                     /locus_tag="VD968_02945"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/oligopeptide/nickel ABC transporter
                     ATP-binding protein"
                     /protein_id="HYE13380.1"
                     /translation="MSAQPVQMGAGGGVFAPVQGSGDPLIAIRELKVHFDLGGGTVLD
                     KLVGGSRVKRVVKAVDGVTIDILPGETLGLVGESGCGKSTLGRALLRLTEPTGGQVLF
                     RGRDLARLSQRELRTHRRHLQMIFQDPYASLNPRMTVAQIVGEPLETFGLAGTRAERD
                     ERVRELMSTVGLSPRFLKRYPHEFSGGQRQRIGIARALAVDPDFIVADEPISALDVSI
                     QSQ"
     gene            complement(662..1729)
                     /locus_tag="VD968_02950"
     CDS             complement(662..1729)
                     /locus_tag="VD968_02950"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE13381.1"
                     /translation="MSSQNGNLLSVRGLRTYFQTEDGTVKAVDGISFDLKRGETLGIV
                     GESGSGKSVTNLSIIRLIPDPPGKIVSGEVLFQGRDILALPPDEVRKIRGKRISMIFQ
                     DPMTSLNPFMKISRQLMELTQLHLGHTKEQAHEHAVKMLETVGIPEARARADSYPHEF
                     SGGMRQRVMIAMALSCEPELLIADEPTTALDVTIQAQILELIRKLKEETGTSVILITH
                     DLGVVAGMTDDIIVMYAGKVFEQAPTRELFATPGNPYTKGLLKSVPDPAHEQGKELYQ
                     IPGLPPDLANLPAGCPFAPRCYRAEEVCHREFPPFVQLNAEHFSLCHFAEEVYAASRS
                     EREGRAGAAPSTDIPQGGAGV"
     gene            complement(1735..2844)
                     /locus_tag="VD968_02955"
     CDS             complement(1735..2844)
                     /locus_tag="VD968_02955"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE13382.1"
                     /translation="MNEERTPKVPTEEGRGQAPQEAGGPALTPRGTPARPPVARREGD
                     EIHAFPETAVGEADVRTEGRLAGAGTSLWRDAWRRLLKNKLAVFGMVVVGLIVVACLL
                     GPPLIKAATGFAYDTIPSDTRELQSFPPFTAPDGGFSWAHPMGTDSSGRDVLARVLQG
                     GRISLMVGIIATLVSLVIGVTWGATAGYLGGKVDDVMMRIVDVLYAIPYMMIVIVLLA
                     FFGGQTPLGQIFLLFAALGAVSWLTMARIVRGQIMSLKNQEFVLAARATGVPVPKIIF
                     RHLVPNALGPVIVYATLTIPSVMLQEAFLSFLGLGVQAPYASWGSLASDGIQNIAIFP
                     WQLIFPGVTMALTLFSLNFMGDGLRDALDPQMRKF"
     gene            complement(2849..3769)
                     /locus_tag="VD968_02960"
     CDS             complement(2849..3769)
                     /locus_tag="VD968_02960"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYE13383.1"
                     /translation="MFRFIVRRLIVTVPMVLIVVSLTWGLIRLAPGNFYTGEKKLPAA
                     IEKNLREKYGLDKPWYVQYGRMMKNILRLDFGNSLKYESESVNDILKRTLPVSAALGL
                     CAYLLALVVGVAFGTLAALRQNSRLDYASMALAMLGISLPNFVLGPLLVLVFALTLYW
                     LPPARWGGFPSWNLVLPVLTLSAVYMAYIARLTRSGMLEVLRSDYIRTARAKGLRERD
                     VVLRHALRGGLLPVVSFTGPALAMLIAGTVVVERIFAMPGLGNYFINANLNRDEPLII
                     GIVAFISVTILIFNLLVDIAYGIIDPRIRY"
     gene            complement(3805..5784)
                     /locus_tag="VD968_02965"
     CDS             complement(3805..5784)
                     /locus_tag="VD968_02965"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HYE13384.1"
                     /translation="MSKQTRARAAALLLATALLAASCTTEASSEFFGKIEPPPGQTLR
                     YISGSEPESLDPQMSSGQPEARIHMALYEGLVEYHPKTMEPMPAVAESWVIDEDATEL
                     VFRMRRNARFSNGDPITAHDFVYTFRRGLRPGLGSRSAYMAYDIKYAQAFNEGGAFVR
                     DPATGRFVTAAEAEGTGATAPASVASADELHRRELSKLGEDAAPDTDFHRLIHEPARL
                     VVPGDEKGRADAAKKSPKLAALIAGKEFVPVRGEDIGVEAVDDYTVRVTLRQPAPHFV
                     GMLAHQFFRVVPRKAVEQFGPAWTKPENFVGSGAFKLQSHRPYNEIVVVPNPNYWDAA
                     TVRLERIVFYPLEDLTTMLNLYKAGDVDAVYNHTVPAPWLKSGVRHKKDYMDAPENAT
                     EYYMVNTTKPPMNDKRVRKALALAVDREALADYKVSAKPNGAFVPEGIFRGYPRPAGY
                     GFDVEQARRLLAEAGYRDASGRFDPKKFPVSEVEITYNTSESNKAVAELIQAQWKQNL
                     GITVPLNNVEWKVFLNMRSKLEYKGIARAGWIGDYMDPYTFLSIFTTETGGDNGTGWF
                     DPKYVEMLNAANSEPDQAKRYQLLAKAEEYLLDAAPFLPLLTQATNWMKKPYVKGLYP
                     NPGTMHAWKYVYIEHDRAKWDRGVPDLSTDTLASR"
     gene            complement(6040..>6458)
                     /locus_tag="VD968_02970"
     CDS             complement(6040..>6458)
                     /locus_tag="VD968_02970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13385.1"
                     /translation="DFDVARRSIVLQTTDEETNMLALFGDPVPTSADDDEAAGGASPS
                     PTSPATPAEPGAAPSESPADPARRPLILTEEEALRELPAIPLYFASSYALVKPYVEGF
                     EPNLLDAHSLKRVRLNTAWKPPEGASQSRSARVFTP"
BASE COUNT         1046 a         2015 c         2266 g         1131 t
ORIGIN      
        1 atctgcgact gtatggaaac gtcgagggcg gagatgggct cgtcggccac gatgaagtcg
       61 gggtcaacgg ccagcgcccg cgcgatgcct atgcgctggc gctgcccgcc cgaaaactcg
      121 tgcgggtagc gcttcaggaa gcgggggctc aggccaacgg tggacatcaa ctcgcgcacc
      181 ctctcgtcgc gctcggcgcg cgtgccggcg agcccgaagg tctccaaggg ctcgcccaca
      241 atctgcgcga ccgtcatgcg cgggttaagc gaggcgtacg ggtcttggaa gatcatctgg
      301 aggtggcggc ggtgcgtgcg cagctcgcgc tgggagaggc gcgcgaggtc gcggccgcgg
      361 aagagcacct gcccgcccgt cggctcggtc aggcgcagca gggctcgccc gagcgttgac
      421 ttcccgcagc cggactcgcc tacgagcccg agcgtctcgc ccggcagtat gtcaatcgtg
      481 actccgtcaa cggccttgac cacgcgcttt acgcgcgagc cgccgacgag cttatcaaga
      541 acagtcccgc cgccgaggtc gaagtgaacc ttcagttcgc gaatcgcgat gagcgggtcg
      601 cccgagccct gcaccggcgc gaacactccg ccgcccgcgc ccatctgaac cggctgcgcg
      661 ctcatacgcc ggcaccccct tgcggaatat cggttgacgg cgcggcgccg gcgcggcctt
      721 cgcgctcgga gcgcgaagcg gcatagacct cctcggcgaa gtggcagagc gagaaatgct
      781 cggcgttgag ctgcacgaag ggcgggaact cgcggtggca gacctcctct gcgcggtagc
      841 agcgcggtgc gaagggacag ccggcgggca ggttggcgag gtcgggcggc aggcccggta
      901 tctggtaaag ctccttgccc tgctcgtgcg cggggtcagg gactgacttg agcagcccct
      961 tcgtgtaggg gttgccgggc gtcgcgaaca gctcgcgcgt cggcgcctgc tcaaagacct
     1021 tgccggcgta catgacgatt atgtcgtcgg tcatccccgc gacgacgccg aggtcgtgcg
     1081 tgatgaggat gacgctcgtg ccggtctcct ccttgagctt ccttatcagt tcgagaatct
     1141 gcgcctggat ggtaacgtcg agcgccgttg tcggctcgtc ggcaattaga agctcgggct
     1201 cgcaggagag cgccatcgca atcatcacgc gctggcgcat gccgcccgag aactcgtgcg
     1261 ggtagctgtc ggcccgggcg cgcgcctccg ggatgcccac ggtctcgagc atctttacgg
     1321 cgtgctcgtg cgcctgctcc ttcgtgtggc cgaggtgtag ctgcgtcagc tccatgagtt
     1381 ggcgcgagat tttcatgaag gggttgagcg aggtcatggg gtcctggaag atcatgctga
     1441 tgcgcttgcc gcgaatcttc ctgacctcgt cgggcggtag cgcgagtatg tcgcgcccct
     1501 ggaagagcac ctcgccggag actatcttgc ccggcgggtc ggggattagc cggatgatgg
     1561 agaggttcgt gaccgacttg ccggagcccg actcgccgac gatgccgagc gtctcgccgc
     1621 gcttcaggtc gaagctgatg ccgtccaccg ccttgaccgt gccgtcctcg gtctggaagt
     1681 aggtgcgcag tccccttacg gaaagcaggt tgccgttctg gctgctcatg gctctcagaa
     1741 tttccgcatc tgcgggtcga gggcgtctcg caggccgtcg cccatgaagt tgagtgagaa
     1801 gagcgtgagc gccatcgtca cgccggggaa tatgagctgc caggggaaga tggctatgtt
     1861 ctgtatgccg tcgctggcga ggctccccca tgatgcgtag ggcgcctgca ccccgaggcc
     1921 gaggaaggag aggaacgcct cctgtagcat gacgctcggg atggtgagcg tcgcatagac
     1981 gattacgggg ccgagcgcgt tagggacgag gtggcggaag atgatcttag gcacgggcac
     2041 gcccgtcgcc ctcgcagcga gcacgaactc ctggttcttc agggacatta tctgcccgcg
     2101 cacgatgcga gccatcgtga gccacgaaac ggcgcccagc gccgcgaaca gcaggaaaat
     2161 ctgcccgagc ggcgtctgcc cgccgaagaa ggccagaagc acgatgacta tcatcatgta
     2221 ggggatggcg tagagcacgt caacgatgcg catcatcacg tcgtcaacct tgccgccgag
     2281 gtagcctgcg gtcgcgcccc atgtgacgcc gatgacgagt gagacgagag tcgcgatgat
     2341 gccgaccatc agcgatatgc ggccgccctg aaggacgcgc gcgagcacgt cgcggccgga
     2401 gctgtccgtc cccatcgggt gagcccagga aaaaccgccg tccggcgcag tgaatggcgg
     2461 gaacgactga agctcgcgcg tgtccgaggg gattgtgtcg taggcgaagc ccgtcgccgc
     2521 cttaatcagg ggcggcccca gcaggcacgc gacgacgatg aggccgacta cgaccatgcc
     2581 gaagaccgcc agcttgttct ttaggagtct gcgccaggcg tcgcgccaga gcgaagtgcc
     2641 tgcgcccgcg agccggcctt ccgtgcgcac gtccgcctcg cccacggccg tctcggggaa
     2701 ggcgtgaatc tcgtcgccct cgcggcgcgc gacgggcggg cgggcgggcg tcccccgcgg
     2761 cgtgagagcc gggccgcccg cctcctgcgg cgcttgccct cggccctcct cggtcggcac
     2821 tttcggggtt ctctcttcgt tcatggcttc agtagcgtat gcgcgggtca atgatgccgt
     2881 aggcgatgtc cacgagcagg ttgaagatga gaatcgtgac ggagatgaag gcgacgatgc
     2941 cgatgatgag cggctcgtcg cggttcaggt tcgcgttgat gaagtagttg cccaggcccg
     3001 gcatcgcgaa tatgcgctcg accaccacgg tgccggcaat cagcatcgcc agcgcgggcc
     3061 ccgtgaagga gacgaccggc agcagcccgc cgcgcagcgc gtgacgcagt acaacgtcgc
     3121 gctcgcgcag gcccttcgcg cgcgccgtgc gtatgtagtc cgagcgcaga acctccagca
     3181 tccccgagcg cgtcagccgc gcgatgtatg ccatatagac ggccgagagc gtcaggacgg
     3241 ggagcaccaa gttccagctc gggaagccgc cccaccgcgc gggcggcagc cagtagagcg
     3301 tgagcgcgaa gacgagcacg agcagcggcc cgagcacgaa gttcggcagc gatatgccga
     3361 gcatcgcgag cgccatcgag gcgtagtcga gccgcgagtt ctggcggagc gccgccagcg
     3421 tgccgaaggc gacgcccacg acgagcgcga gcaggtaggc gcagaggccg agcgccgccg
     3481 agacggggag ggtgcgcttg agtatgtcgt tgaccgactc gctctcgtac ttcaaagagt
     3541 tcccgaagtc gaggcggagg atgttcttca tcatccgccc gtactgcacg taccagggct
     3601 tgtcgagccc gtacttctcg cgcaggttct tctctatcgc cgcgggcagc ttcttctcgc
     3661 ccgtgtagaa gttgccgggc gcgagcctta tcagccccca ggtgagcgag acgacgatta
     3721 gcaccatcgg tacggtgacg atgagtcgcc tgacgatgaa gcggaacatt taaaaagcct
     3781 cctgggctct ttctcatcct cgcgtcagcg ggacgcgagc gtgtcggtcg agaggtcagg
     3841 cacgcccctg tcccacttcg cgcggtcgtg ctcgatatag acgtacttcc acgcgtgcat
     3901 cgtgccgggg ttcgggtaga ggcccttgac gtagggcttc ttcatccagt tcgtcgcctg
     3961 cgtgagcagc ggcaagaacg gcgcggcgtc taagaggtac tcctcggcct tcgcgagcag
     4021 ttggtagcgc ttcgcctggt cgggctcgct gttggcggcg ttcagcatct cgacgtactt
     4081 cgggtcgaac cagcccgtgc cgttgtcgcc ccccgtctcg gtcgtgaaga tggagaggaa
     4141 cgtgtagggg tccatgtagt cgcctatcca gccggcgcga gcgatgccct tgtactcgag
     4201 cttcgagcgc atgttgagga agaccttcca ctcgacgttg ttgagcggga cggtgatgcc
     4261 gaggttctgc ttccactgcg cctgaatgag ctccgcgacc gccttgttag actccgaggt
     4321 gttgtaggtt atctcgacct cgctcacggg gaacttcttc gggtcgaagc ggcccgaggc
     4381 gtcgcggtag cccgcctcgg cgagcaggcg cctggcctgc tccacgtcga acccgtagcc
     4441 ggccgggcgc gggtagccgc ggaagatgcc ctcggggacg aacgcgccgt tgggcttggc
     4501 gctcacctta tagtcggcca gcgcctcgcg gtcaacggcg agggcgagcg ccttgcgaac
     4561 gcgcttgtcg ttcatcggcg gcttcgtcgt gttcaccatg tagtactcgg tggcgttctc
     4621 gggcgcgtcc atgtagtcct tcttgtgacg gacgccgctc ttgagccacg gggcggggac
     4681 ggtgtggtta tagacggcgt caacgtcgcc cgccttgtag aggttgagca tcgtcgtcag
     4741 gtcttcgagc gggtagaaga cgatgcgctc cagcctgacg gtcgccgcgt cccagtagtt
     4801 cgggttgggg acgactacta tctcgttgta ggggcggtgc gactggagct tgaaggcgcc
     4861 gctgccgacg aagttctcgg gcttcgtcca ggccgggccg aactgctcga cggcctttcg
     4921 cggcacgacg cggaagaact ggtgcgcgag catgcctacg aagtggggcg ccggctgccg
     4981 cagcgtgacg cgcacggtgt agtcgtcaac ggcctcgacg ccgatgtcct cgccgcggac
     5041 ggggacgaac tccttgccgg cgatgagcgc cgcgagcttc gggctcttct tggcagcgtc
     5101 ggcccggccc ttctcgtcgc cggggacgac cagccgcgca ggctcgtgaa tgagcctgtg
     5161 gaagtccgtg tcgggggcgg cgtcctcacc cagctttgaa agctcgcggc ggtgcaactc
     5221 atccgccgag gcgaccgacg cgggggccgt cgcgcccgtt ccttcagctt cggcggccgt
     5281 cacgaagcgg cccgtcgcgg ggtcgcgcac gaaggctccg ccctcgttga aggcttgcgc
     5341 gtactttatg tcgtaggcca tgtaggcgct gcgcgagccg aggccggggc gcaggccgcg
     5401 ccggaatgta tagacgaagt cgtgcgcggt gatggggtcg ccgttcgaga agcgcgcgtt
     5461 gcggcgcatg cggaagacaa gctcggtcgc gtcctcgtca atcacccagc tctccgcgac
     5521 ggcgggcatc ggctccatcg tcttcgggtg atactcgacg aggccctcgt agagcgccat
     5581 gtgtatgcgc gcctcgggct ggccggagct catctgcggg tcgagcgact ccggctctga
     5641 gccggagatg tagcggagcg tctgacccgg cggcggctcg attttgccga agaactcaga
     5701 cgaagcctcc gtcgtgcagg aggcggccag gagcgcggtg gcgagcagga gggcggcggc
     5761 gcgcgcgcgc gtttgtttcg acatggcgac tttactcccc ttcacacaca agaagcgcgg
     5821 gagagatgac tcgctgctcg cgaaaagctc gacttgccgg ggaaactaag ctcggcgcta
     5881 ttctactgcg actgttttgc agcgagaaat tatcacgcgc tatggcttcc aatcaaggcg
     5941 cgccttactg gcacgccgct ttgaagcagc gatgccgcgc gctgcgagcc ccgttgctcg
     6001 ccgcccgtga tttttacaac tgcgggatat tttggcgcgt cagggcgtga agactcgcgc
     6061 cgagcgggac tggctcgctc cctctggcgg cttccatgcg gtgttaagcc gcacgcgctt
     6121 gagtgagtgt gcgtccagca ggttgggctc gaacccctcg acgtagggtt ttacaagcgc
     6181 gtaggacgag gcgaagtaga gcgggattgc gggcagctcc ctgagcgcct cttcttcggt
     6241 caggatgagc gggcggcggg cggggtcggc cggcgactca ctcggggcgg cgccaggctc
     6301 ggcgggcgtg gcaggcgacg tgggggaggg cgaagcgccg ccggcggcct cgtcgtcgtc
     6361 cgcagaagta gggacggggt cgccgaacag ggcgagcatg ttcgtctctt cgtcggtcgt
     6421 ctgaaggacg atgctgcggc gcgccacgtc gaagtcgc
//
LOCUS       DASPKR010000102         5001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_788209, whole genome shotgun sequence.
ACCESSION   DASPKR010000102 DASPKR010000000
VERSION     DASPKR010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5001)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5001
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_788209"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2559)
                     /locus_tag="VD968_02975"
     CDS             complement(<1..2559)
                     /locus_tag="VD968_02975"
                     /inference="COORDINATES: protein motif:HMM:NF018190.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5916 domain-containing protein"
                     /protein_id="HYE13386.1"
                     /translation="MNYLKKAAALCLLTVACAQLTRAQLFSALSPTPTPAPKPTPSAT
                     PTPAPATPVKAVAGKSVPALPPEKASPVRVPRFDAAPVIDGKLDDAVWKQAAVLKDFY
                     QINPGDNVEPTAPTEVFIGYDSKHLYLAFRAYDDPAKVRATVARRDNVFGEDNVRVML
                     DTFDDQRKAYVLGFNPLGVQQDGIMTEGVTTDFSVDIVMESKGAITSDGYVVEVAVPF
                     KSLRYEAGKGKNWGLHVWRNIDRNSDEIDSWVPIARDKSGTLNQAGKITGLEEISAER
                     TLELIPSVTLSETGRRVRAIETPAGRFINDPLTLDPGLTAKLVASSAMTLDLAVNPDF
                     AQVEADSLVVTTNQRFPIFFAEKRPFFLEGIEIFKTPLTAVHTRSIVDPDIALKLTGK
                     RGRNTYGVMFASDNGPGNLSRDDRNFVRDTALSQNASEVARRDALSKVMDRNATVGVM
                     RVKRDVGRENSLGLIATSYNFVDKYSHLGGVDGRFRLDKMTTVTFQLLGTTSHLPRFY
                     PEEGETADRSEQGLGYLATLYRQGRNWSMELYGEGYTQNYRADVGFTSRTNTNFNSLF
                     VGYNSDPNQKARVVRKHFHNFTHIDYDFQGRMQIWESEFNTEWGFQRNSYLGVAYEYA
                     YERLFEEEFGSTRAAVGRTTARLFPSLAGQLPPCDPFGTLAPPLADDPTTEENESRRR
                     VPRCTFYGERTERSTSKNHFFLYGGIRPSKKYNLSARAVYRDGHFDFDFGAGRRFPRV
                     SPAALLLGQGAPRDPGPGGLFELRTTFVYQPTDELNVSLDYTKNRLRRYDTDRLAFDV
                     NLFSLRTTYQFTRFLFARARIDYESAPRRARGQFLLGWAPNPGTSFYVGYNDDVT"
     gene            complement(2830..3600)
                     /locus_tag="VD968_02980"
     CDS             complement(2830..3600)
                     /locus_tag="VD968_02980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13387.1"
                     /translation="MKHRSIGVLIIAAAALAAAPQASQELSALKDSLAGRARAGILQA
                     LLNLQPRGAARQMVARAAKPAACEAEKSAVARKAEPADRQGRRDSSARQQAEQYEELA
                     MIVDPNVLGVGPEKAESVVLASAEEPIDVSVRAHDLAMIIPPSEGNIQGVATASAPST
                     RVRRIPKNDVRSTFIAAGGDVEFEFTAEGARRELEEALKEAEAARSAGEATRLLKVKR
                     AVRNVAATPPVAAPSRPRRAPAPFWAAEDERDVIPSGE"
     gene            4079..>5001
                     /locus_tag="VD968_02985"
     CDS             4079..>5001
                     /locus_tag="VD968_02985"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HYE13388.1"
                     /translation="MRYRRFGRTGWQVSEIGYGMWGMGSWSGSDDEESMNSLRRAVEL
                     GVNFFDTAWAYGEGRSEALLGRLVREHADRRLYTASKIPPKNRKWPSRREYTLDETFP
                     PDHIEEYVHSSLRNAGLESFDLMQFHVWEDAWLEDDRWARKMDELKSQGLVGAVGVSI
                     NRWEPWNGVRAVRSGLVDAVQVIYNIFDQNPKDELFPACREMGVAVIARVPFDEGTLT
                     GTLTKESRWPEGDWRNTYFVPENLIPSVERADRLKPIAGRAGMSMPEMALRFILSEPA
                     VSTIIPGMRKIKNVEANAAASDAGPLPEAVLA"
BASE COUNT          806 a         1550 c         1769 g          876 t
ORIGIN      
        1 ggtcacgtcg tcgttgtagc cgacgtagaa ggaggtgccg gggttcggag cccacccgag
       61 gaggaactgg ccgcgcgcgc ggcgcggcgc cgactcgtag tcaatccgcg cgcgcgcgaa
      121 gaggaagcgc gtgaactggt aggtagtgcg cagcgagaag aggttcacgt cgaaggcgag
      181 gcggtcagtg tcgtagcggc gcaggcggtt cttcgtgtag tcgagcgaga cgttcagctc
      241 gtcggtcggc tgatagacaa aggtcgtgcg aagctcgaag aggccaccgg ggcccgggtc
      301 gcgcggcgcc ccctgcccga gcagcagcgc cgctgggctc acgcgtggga agcggcggcc
      361 ggcgccgaag tcgaagtcga agtggccgtc gcgatagacg gcgcgcgcgc tcaggttgta
      421 cttcttgctc gggcgtatgc cgccgtaaag gaagaagtgg ttcttcgagg tcgagcgctc
      481 ggtgcgctcg ccgtagaagg tgcagcgcgg gacgcggcgg cgcgactcgt tctcttcggt
      541 cgtcgggtcg tccgcgagcg gcggggcgag cgtgccgaag gggtcacagg gcgggagctg
      601 tcccgcgagc gaggggaaga gccgggcggt cgtgcggccg acggccgcgc gcgtcgagcc
      661 gaactcctcc tcgaacaggc gctcgtaggc gtactcgtat gcgacgccca ggtatgagtt
      721 gcgctggaag ccccactcgg tgttgaactc gctctcccag atttgcatgc gcccctggaa
      781 gtcgtagtca atgtgcgtga agttgtggaa gtgcttgcgc acgacacgcg ccttctggtt
      841 cgggtcggag ttgtagccga cgaagaggct gttgaagttg gtgttcgtgc gcgaggtgaa
      901 gccaacgtcg gcgcggtagt tctgcgtgta gccctcgccg taaagctcca tgctccagtt
      961 gcgcccctgc ctgtagagcg tggcgaggta gccgaggccc tgctccgagc ggtcggccgt
     1021 ctcgccctcc tccgggtaga agcgcggaag gtgcgacgtg gtgccgagga gctggaacgt
     1081 cacggtcgtc atcttgtcga ggcggaagcg gccgtccacg ccgccgaggt ggctgtactt
     1141 gtcaacgaag ttgtagctgg tggcgatgag gccgaggctg ttctcgcgcc ccacgtcgcg
     1201 cttgacgcgc atgacgccga cggtcgcgtt gcgatccatc accttcgaga gcgcgtctcg
     1261 ccgcgcgacc tccgacgcgt tctgcgacag ggccgtgtcg cgcacgaagt tgcggtcgtc
     1321 gcggctcagg ttcccggggc cgttgtcgct cgcgaacatc acgccgtagg tgttgcgccc
     1381 gcgcttgccc gtgagtttga gcgctatgtc cgggtcaact atcgagcgcg tgtggacggc
     1441 cgtgagcggc gtcttgaata tctcgatgcc ttcgaggaag aaggggcgct tctcggcgaa
     1501 gaatatgggg aagcgctggt tagtggtgac gacgagagag tcggcttcga cctgcgcgaa
     1561 gtcggggttg accgcaaggt cgagcgtcat ggcggacgag gcgacgagct tggccgtcag
     1621 ccccggatcg agggtcagcg ggtcgtttat gaagcggccc gcgggagtct ctatggcgcg
     1681 cacgcgcctg cccgtctccg agagcgtgac gctcgggatg agctcgagcg tgcgctcggc
     1741 cgagatctct tccaggcccg ttatcttccc cgcctggttg agcgtgccgg acttgtcgcg
     1801 cgcaatcggc acccacgagt caatctcgtc gctgttgcgg tctatgttgc gccagacgtg
     1861 caggccccag ttcttcccct tccccgcctc gtagcgtagc gacttgaacg ggacggcgac
     1921 ctcgacgacg tagccgtcgc tcgttatcgc ccccttcgac tccatgacga tgtcaacgct
     1981 gaagtcggtg gtgacgccct ccgtcatgat gccgtcctgc tgcacgccga gcgggttgaa
     2041 gccgagcacg tatgccttgc gctgatcgtc gaacgtatcg agcatcacgc gcacgttgtc
     2101 ctcgccgaag acgttgtcgc ggcgcgcgac cgtcgcgcga accttggccg ggtcgtcgta
     2161 ggcgcggaag gccaggtaga ggtgcttaga gtcgtagccg atgaagacct ccgtgggcgc
     2221 ggtcggctcg acgttgtctc cggggtttat ctggtagaag tccttgagca ctgcggcctg
     2281 cttccacacc gcgtcgtcga gcttcccgtc aatcaccggc gccgcgtcga agcgcgggac
     2341 tcggacgggg cttgccttct cgggcgggag cgccgggacg gattttccgg caaccgcctt
     2401 aacgggcgtc gcgggcgcgg gcgttggcgt cgccgaaggc gtgggcttcg gagccggagt
     2461 gggcgtgggc gagagagctg agaagagttg tgcgcgcgtg agttgcgcgc aggcgaccgt
     2521 gagcaggcaa agagccgccg cttttttcaa gtagttcatc gggccatccg tctggtttgg
     2581 aagtcttcgc ggattgaggc gccgcggcgc acttaggttt acgcgcgagc ggcctccccg
     2641 ctcgcattcg tggcggggag gcgcgttcgt tgccccgtgc ttacccttcg ggattcgagc
     2701 gaggtcgctt cggaaattcg acctggggag ttaaacgaag gcggcgctcc ggggggcgga
     2761 gccgtgcgat gatgccagcg cgaggaagaa gttgcaagcc gcgaagggcc gcggcgaggc
     2821 gccgccccgc tactcccccg acgggatgac gtcgcgctcg tcctcggcgg cccagaaggg
     2881 cgcgggcgcc cggcgcgggc gggaaggcgc agcgacgggc ggcgttgcag cgacgttcct
     2941 gaccgcgcgc ttgaccttca atagtcgtgt tgcctcgccg gccgaacgcg cggcctctgc
     3001 ttccttaagt gcctcctcaa gctcgcggcg ggcaccctca gccgtgaact cgaactcgac
     3061 gtcgccgccg gcggcgatga aagtagagcg cacgtcattc ttgggtatcc ttcgcacgcg
     3121 ggtcgaaggc gctgaggcgg tggctacgcc ctgaatgttg ccctcggacg gcgggattat
     3181 catggcgagg tcgtgggcgc gcaccgacac gtcaatcggc tcctcggccg acgcaagcac
     3241 gacgctctcg gccttttcag ggccgacgcc gaggacgtta gggtcaacta tcatcgcgag
     3301 ctcttcgtac tgctcggcct gctgccgggc cgaagagtcg cggcggccct gcctgtcggc
     3361 tggctcggcc ttgcgcgcga ccgcgctctt ttcggcttcg catgcggccg gcttcgcggc
     3421 gcgcgcgacc atctgcctgg cggcgccgcg cggctgaagg ttcaggagcg cctgaagaat
     3481 ccccgcgcgg gcgcggcccg cgagcgaatc cttgagcgcc gaaagctcct gcgaggcctg
     3541 cggagcggcc gccagtgccg ccgccgcgat tatcagtacg ccgattgacc tgtgtttcat
     3601 tttcttcgcc cgcctgctct gaagcttttc gcggtcgcgc cgggccgtct ctaattcttc
     3661 cggccccgaa aacctctcgc gccctgcttt ctacctgcaa aacaccgggc gccggggttt
     3721 cgtggcaaca tttttttcgc ttacaatgac gcccgtctcg actaagacgt taacaaccaa
     3781 cacgccgcgg gagcccgccg gtttgaattt tttcgccaca cgcggcgtcg gcaacagcgc
     3841 cctcgttcgc cctgttagtg cggccgttcg ctaataggtt tcagaaaaaa tcgccggcgg
     3901 gtttcaattt ttgcgcacgg gcgcgcctcg ccgagcttcc agtatgcacg cgggcgcgag
     3961 gcgcgggcca cgcaattgtg acgagacgcc ttcagggctg acgaagcgcg ggaaacgcgg
     4021 gacgagcggg cgcgctgttc gggaacgaac aggaggcgga caaatcttag gaggagagat
     4081 gaggtacagg cgattcgggc ggacgggctg gcaggtcagc gagatcggct acggcatgtg
     4141 gggcatgggg agttggagcg gctcggacga cgaagagtcc atgaactccc tccggcgcgc
     4201 cgtcgagttg ggcgtcaact tcttcgacac ggcatgggcc tacggcgagg gcaggagcga
     4261 agcgctgctc ggccggctgg tgcgcgagca cgccgacagg cggctctaca cggcctcgaa
     4321 aatcccgcct aagaatcgga agtggccgag ccgccgagag tacacgctcg acgagacgtt
     4381 ccctcccgac cacatagagg agtacgtcca cagcagcctg cgcaacgcgg gcctcgaaag
     4441 cttcgacctc atgcagttcc acgtatggga ggacgcgtgg ctcgaagacg accggtgggc
     4501 gaggaagatg gacgagctta aaagccaggg gctcgtcggc gccgtcggcg taagcatcaa
     4561 ccgatgggag ccgtggaacg gcgtgcgcgc cgtccggagc ggcctcgttg acgccgtgca
     4621 agtcatctac aacatcttcg accagaaccc gaaggacgaa ctgttccccg cctgccgcga
     4681 gatgggcgtc gccgtcatag cgcgcgtccc cttcgacgaa ggcacgctca cggggacgct
     4741 caccaaggag agccgttggc ccgagggcga ctggcgcaac acctacttcg tccctgagaa
     4801 cctgatcccc agcgtcgagc gcgccgaccg cttgaagccc atcgcgggcc gcgcagggat
     4861 gagcatgcca gagatggccc tgcgctttat cctgagcgag cctgccgtct cgaccatcat
     4921 ccccggcatg aggaagatca agaacgtcga ggcgaacgcc gcggcgagcg acgcggggcc
     4981 gctcccagaa gcggtgctcg c
//
LOCUS       DASPKR010000103         4378 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1046753, whole genome shotgun sequence.
ACCESSION   DASPKR010000103 DASPKR010000000
VERSION     DASPKR010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4378)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4378
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1046753"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..550
                     /locus_tag="VD968_02990"
     CDS             <1..550
                     /locus_tag="VD968_02990"
                     /inference="COORDINATES: protein motif:HMM:NF015922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA gyrase C-terminal beta-propeller
                     domain-containing protein"
                     /protein_id="HYE13389.1"
                     /translation="INAVNVDDGDELLGVVLTDGTKRIFIATHDGLAIRFDEQDVRPM
                     GRAARGVRGVDLRKGDYVVSVAAVSADDSERMLSISECGFGKQTPITTYRLQSRGGKG
                     VINMKTTEKTGKVVAVFPVEDDSEVMIITKQGKLIRIEANEIRKTGRGAQGVRLIKTD
                     GGDKVTSASLLDVSAQEEVVVA"
     gene            complement(751..2199)
                     /locus_tag="VD968_02995"
     CDS             complement(751..2199)
                     /locus_tag="VD968_02995"
                     /inference="COORDINATES: protein motif:HMM:NF024298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HYE13390.1"
                     /translation="MNTRARSLSYALALTLISTNLCCAQTAGRDPLAAAYSPQPRHTE
                     RIYGVEFSPDGRLIATASWDGTVKLWDTESGRERRTLAGHGWGVYHAAFSPDGKLVAT
                     ASRDWTAKIWDAATGHELRTLAGHTLAVKAVAWSPEGRRLATASNDGTVRLWDAATGR
                     ELRSLRHKEGAGADVYSVAWAPDGRTVAAGNGDGTVSLWGAESGREAQVLRGAAASLI
                     WAVAFSPDGRTLASLGSMAPDVKLWEVATGRLLRSLEARAAEGSQEAVLSIAWSPDGR
                     TLAAGGASVDERQRRYHGWVKLWGAAEGGELRSAHAHVQGASAVAFSPDGSLLASASE
                     DATLKLWRAPTLDAVKTLSASPQESRGDKFFSLEGPPPPEAVLQGTPAGERLNEWLGA
                     FNTGNVYLMRGFARERFSMRALADRTADERALADLKLFGKTGALEFRRVESSSDSEVK
                     ALAQSARTGETKTITLRVEEGAAGGVVSVEVK"
     gene            complement(2292..3047)
                     /locus_tag="VD968_03000"
     CDS             complement(2292..3047)
                     /locus_tag="VD968_03000"
                     /inference="COORDINATES: protein motif:HMM:NF014448.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HYE13391.1"
                     /translation="MTGAGESTRVGVRVLLFGAAREAASASDLSLTLEGPATARDVLE
                     RVLADHPALRRLRPALLVAVNQEYVRDLGAPVEDGSEVAIFPPVSGGSEGEGGGDGAQ
                     DFFELTTGPIDVGSVARRVVPRRCGATVTLDGYAREFTAGRGRTLYLVYEAYAPMALA
                     EMRRLGREAHNRFDIAHIGIVHRTGRTEIGETSVVISVSAPHRRAAFEACEWAIRELK
                     RTVPIWKKEFFEDGSVWVEGEGAPAQAAQGGEE"
     gene            complement(3047..3748)
                     /locus_tag="VD968_03005"
     CDS             complement(3047..3748)
                     /locus_tag="VD968_03005"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HYE13392.1"
                     /translation="MSDALEKVRGVRELPLFPLPLVLFPGVPLPLHIFEERYRRMLAD
                     VRVSNNLFGLSYFDPNSGEGERPTVGHVGCATEVVEAQQLPDGRSNILTLGLVRYRLA
                     EYVERGDPYLVGRVEFFEDDEEDPRLLAKRAREVTEVFMRIARAMRAISDERGQLPEL
                     PEGEPERLSFLVAAVVEMDAEAKQQLLELHSTTERLRRLYALLKQAVGPYESRARTHD
                     LAKGNGHAGRPVGFE"
     gene            complement(3821..>4378)
                     /locus_tag="VD968_03010"
     CDS             complement(3821..>4378)
                     /locus_tag="VD968_03010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13393.1"
                     /translation="AVHAGVMEAVAREARPHDPGSGAPAPIIEIALRGHLGFKNSLLD
                     LRKIREEALKATGALHVMVKNQSVPVEYAVAAGLDADTSRAERERRIVEDLIARDNRF
                     RDRAREIAELVLEAKRRALGDESPESILDLIEQKLGARPAADVQDRPAHPNETAAAPA
                     PAALHALERNAGRAISDQLSAVSND"
BASE COUNT          642 a         1531 c         1506 g          699 t
ORIGIN      
        1 catcaacgcc gtcaacgttg acgacggcga cgagttgctc ggcgtcgtgc tcacggacgg
       61 caccaagcgc atcttcatcg ccacgcacga cgggctcgcc atacgcttcg acgagcagga
      121 cgtgcgcccg atggggcgcg cggcgcgcgg cgtgcgcggc gttgacctgc gcaagggcga
      181 ctacgtcgtc tcggtcgcgg ccgtctcggc ggacgactcc gagcgcatgc tctcgatctc
      241 cgagtgcggc ttcggcaagc agacgccgat cacgacctac cgcttgcagt cgcgcggcgg
      301 caagggcgtc atcaacatga agacgacgga gaagaccggc aaggtcgtcg ccgtcttccc
      361 cgtcgaggac gactccgagg tgatgataat cacgaagcag ggcaagctca tacgcatcga
      421 ggccaacgag atacgcaaga ccggccgcgg cgcgcagggt gtccgcctga ttaagaccga
      481 cggcggcgac aaggtcactt cggcctcgct cctcgacgtg tcggcgcagg aagaggtggt
      541 cgtggcttga cgcctcaacc ccgatatcag gaacaaaagt aaaagccccg gccgcaaacg
      601 aacggccggg gcttttactt gctcggtgac gcgctttcgg gcgcttcctt tagtcaagcg
      661 gcggagcctg cggccgactg cctggccgat agcggagcgg gaaattcacc gcgaagacga
      721 cgagtgcgac gacgggcagg cgcataccct ttattttact tccacagaga cgacgccgcc
      781 cgccgcgcct tcctcaaccc tgagcgtgat tgtcttcgtc tcgccggttc gcgctgactg
      841 cgcgagcgcc ttcacctcgc tgtccgaaga cgactcgacg cgccggaact cgagcgcgcc
      901 ggtcttcccg aagagtttca ggtctgcgag cgcgcgttcg tcggccgtgc ggtcggcgag
      961 cgcccgcatc gagaagcgct cgcgcgcgaa gccgcgcatg agatagacgt tccccgtgtt
     1021 gaaggcgccg agccactcgt tgaggcgctc gcccgcggga gtcccctgca agacggcctc
     1081 cggagggggc ggcccttcga gcgagaagaa cttatcgccc ctcgactcct gcgggctcgc
     1141 gcttaaggtc ttaactgcgt cgagcgtcgg cgcgcgccag agcttcagcg tcgcgtcctc
     1201 gctcgccgaa gccagcagac tgccgtcggg gctgaaggcc acggccgacg cgccctgcac
     1261 gtgcgcgtgg gccgagcgca actccccgcc ctccgccgct ccccagagct tcacccagcc
     1321 gtggtagcgt cgctgccgct cgtccacgct cgcgccgccc gccgcgagcg tgcgcccgtc
     1381 cgggctccac gcgattgaca ggacggcctc ctgcgagccc tccgccgcgc gcgcttcgag
     1441 cgagcgcagg aggcggcccg tcgccacctc ccagagctta acgtccggcg ccatgctgcc
     1501 gagggaggcg agcgtgcggc cgtcggggct gaaggcgacc gcccagatta agctagcggc
     1561 tgcgccgcgc aagacctgcg cttcgcggcc cgactccgct ccccagaggc tcacggtgcc
     1621 gtcgccgttg ccggccgcga ccgtgcgccc gtccggcgcc cacgcaacgc tgtaaacgtc
     1681 tgcgcccgcg ccctccttgt gcctgagact gcgcagctct cgcccggtcg cggcgtccca
     1741 gagccttaca gtcccgtcgt tgctcgccgt ggcgagcctg cgcccttcgg ggctccaagc
     1801 caccgccttg acggcgagcg tgtggcccgc gagcgtgcga agctcgtggc ccgtcgccgc
     1861 gtcccaaatt ttcgccgtcc agtcgcggct cgccgtggcg acgagtttcc cgtcggggct
     1921 gaaggccgcg tgatagacgc cccagccgtg gccggcgagc gtgcgccgct cgcgccccga
     1981 ctctgtatcc caaagcttga cggtgccgtc ccaactcgcc gttgcaatca gccgcccgtc
     2041 cgggctgaac tcgacgccgt agatgcgctc cgtgtggcgc ggctgcggag agtaggccgc
     2101 cgccaggggg tcgcgccccg ccgtctgcgc gcagcacagg ttggtcgaaa ttaaagtgag
     2161 ggctagagcg taagagagac ttcgggcgcg agtgttcatg tgcagaccgg ccggccgccg
     2221 ttgctcctcg aagcttgaac gagcttcacc gtcacgcccc taaagacacc cgccccagcc
     2281 gcgcggttcc ttcattcttc accgccctgc gccgcctgcg cgggcgcgcc ctcgccttcg
     2341 acccagacgg agccgtcctc gaagaactct tttttccaga tggggacggt gcgcttcaac
     2401 tcgcgtatgg cccactcgca cgcctcgaag gcggcgcgcc gatgcggggc gctgacgctt
     2461 atgacgaccg aggtctcgcc tatctccgtc cgtcccgtgc ggtggacgat gccgatgtgc
     2521 gcgatgtcga aacgattgtg tgcctcgcgc ccgagccgcc gcatctcggc gagggccatc
     2581 ggcgcgtagg cttcatagac gaggtagagc gtgcgcccgc gccccgctgt gaactcgcgc
     2641 gcgtagccgt cgagcgtgac cgtcgcgccg cagcggcgcg ggactacgcg gcgcgcgacc
     2701 gagcccacgt caatcggccc ggtcgtaagc tcgaagaagt cctgcgcgcc gtcgccgccg
     2761 ccttcgcctt ccgagccgcc gctcacgggc gggaagatgg cgacctcgct gccgtcctcg
     2821 accggggcgc ccaggtctct gacgtactcc tgattgaccg cgacgagcag cgccggtcgc
     2881 aggcgccgca gggcggggtg atccgcgagc acgcgctcca gaacgtcgcg ggcggtggcg
     2941 gggccttcga gcgtgagcga caagtctgag gcggaggccg cctcgcgcgc cgcgccgaag
     3001 aggaggacgc gcacgccgac gcgcgtgctt tctcccgcgc ccgtcatcat tcgaagccca
     3061 cggggcggcc cgcgtggccg ttgcctttgg cgaggtcgtg cgtgcgcgcg cggctctcgt
     3121 acgggccgac ggcctgcttg agcagcgcgt agaggcgccg cagccgctcc gtcgtcgagt
     3181 gaagctccaa aagctgctgc ttggcctcag cgtccatctc gaccacggcg gcgacgagga
     3241 aggagaggcg ctcgggctcg ccctcgggga gttcaggcag ttggccgcgc tcgtcgctta
     3301 tggcgcgcat ggcgcgggcg atgcgcatga agacctcggt gacttcgcgg gcgcgcttcg
     3361 cgaggagccg cgggtcttcc tcgtcgtcct cgaagaactc gacgcggccg accaggtacg
     3421 ggtcgccgcg ctcgacgtac tccgcgagcc ggtaacgcac gagcccgagc gtgaggatgt
     3481 tggagcgccc gtccgggagc tgctgcgcct ctacgacttc ggtcgcgcag ccgacgtggc
     3541 cgaccgtggg gcgctcgccc tcaccggagt tcgggtcgaa gtaagagagg ccgaagaggt
     3601 tgttcgagac gcgcacgtcc gccagcatgc gccggtatcg ctcctcgaaa atgtggagcg
     3661 gcagcggcac gcctgggaag agcacgagcg ggagcgggaa gagcggaagc tcccgcacgc
     3721 ctcttacttt ttccagtgcg tcggacatgg gttagccgtc agcagtcagc tatcagcgct
     3781 cagccgaaga cgatgattgg aagagtgatt cttgttcccg tcagtcgttg ctgacggccg
     3841 acagctgatc gctgatcgct cttcccgcgt tgcgctcgag cgcgtggagc gcggccgggg
     3901 ccggcgccgc ggcggtttca ttcgggtggg caggcctgtc ttgcacgtcc gcggcggggc
     3961 gcgcgccgag cttctgctct atcaggtcga ggatgctctc gggcgattcg tcgccgagcg
     4021 cgcggcgttt ggcttcgagc accagctctg cgatctcgcg ggcgcggtcg cggaagcggt
     4081 tgtcgcgtgc tatcaggtct tcgactattc ggcgctcgcg ctccgcgcgc gaggtgtctg
     4141 cgtcgaggcc ggcggcgacg gcgtactcga cggggacgct ctggttcttg accatgacgt
     4201 ggagcgcgcc cgtcgccttg agcgcctcct cccggatctt ccgcaaatcc aggagcgagt
     4261 tcttgaagcc cagatgcccg cggagcgcta tctcgatgat gggcgcgggc gcgccggagc
     4321 cggggtcgtg cgggcgcgcc tcgcgcgcga ccgcctccat gacgcccgcg tggacggc
//
LOCUS       DASPKR010000104        12350 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_11307, whole genome shotgun sequence.
ACCESSION   DASPKR010000104 DASPKR010000000
VERSION     DASPKR010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12350)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12350
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11307"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..601)
                     /locus_tag="VD968_03015"
     CDS             complement(<1..601)
                     /locus_tag="VD968_03015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13394.1"
                     /translation="MTEKKSKYDTDPLDPDFVRRTEPLMGGTGGVGAGEETTPLPRRD
                     PALEEPTRRFGEELSDSYPSVFVPPTYQPPRAPQPQPFTTFGAGPHQPPATTAPPPGP
                     SSPYNPAGAYGYQQQPGPSSRPVEKLGIPENIANVLPYLPFWIGLVAAVVELIIVPRT
                     ETRTRFHAAQGLAVQLAITAGSIAFDLIGGVTGRNFGGTI"
     gene            complement(645..1076)
                     /locus_tag="VD968_03020"
     CDS             complement(645..1076)
                     /locus_tag="VD968_03020"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HYE13395.1"
                     /translation="MTASLPAIKLPRELAEQLCAHAREAAPEECCGLLGGRAGRAESV
                     YRLRNVAGDRLTAYEAAPEELFAAQRLMRERGEELVAIYHSHPRSEEPRPSPTDVRLA
                     FYPSAVYLIIGSRAGGECVVRAFRISEREGRWEPAALEGGG"
     gene            complement(1092..2411)
                     /locus_tag="VD968_03025"
     CDS             complement(1092..2411)
                     /locus_tag="VD968_03025"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE13396.1"
                     /translation="MKRFVCALLLSLLAWQPGARSQSGQGAEKAAAPKRLAVRAARMI
                     DVRSGSVVRDAVVLVEGERVTAAGARLSVPAGVEVIDLGDATILPGLIDCHTHITSQP
                     TNYYEDIFRRSPIDYAVVAHVYARRTLEAGFTTVRDVGSGEFIDVALRNAINAGTIQG
                     PRMQVATLAVGATGGHADLTGFSPYIKFGQFSGIADGEAEIRKLIRFEVKNGADLIKL
                     VATAGVLSEEESVGAPQYTQEEMAAAVDEAAMWGRKVAAHAHGAEGIKRAVRAGVASI
                     EHGSFLDEEGIRLMKQRGTYLVADVYNDDYILAEFSRLGYPDKIIEKEKLVGRTQREN
                     FQKAVRAGVKVAYGTDAGVYPHGWNGKQFAHMVRWGMTPAQAIQAATLNAADLLGWSD
                     RVGTLEAGRFADLIAVRGDPLRDVTELERVAFVMKGGAVVKNELRGR"
     gene            complement(2426..2917)
                     /locus_tag="VD968_03030"
     CDS             complement(2426..2917)
                     /locus_tag="VD968_03030"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HYE13397.1"
                     /translation="MSDGDRDRALREHLLYLLRGGGAHIKFDEVVNDFPAGLMNGRAA
                     GVPYTPWRLLEHMRIAQWDILEFSRSAAHVSPPWPEGYWPPEGAEADEAAWRASAEAF
                     RADLGAVEELVADPSVDLYARIPHGDGQTVLREALLVADHNAYHLGALATLRRALEAG
                     RGH"
     gene            complement(2934..4748)
                     /gene="aspS"
                     /locus_tag="VD968_03035"
     CDS             complement(2934..4748)
                     /gene="aspS"
                     /locus_tag="VD968_03035"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HYE13398.1"
                     /translation="MAINLDHLGELERTHSCGELRAGDAGKTVVLMGWVAVRRDFGPL
                     TFVDLRDRDGLTQIVFDADEAGEAHARAKEVRGEYVVAVRGEVVLRDESARNPKLSTG
                     DIEVRAREILVLNEARTPPFQLDAPPDKLAAEEVRLKYRYLDLRRPQLQSNLRLRHRA
                     VAEIRSYMNEQGFTEIETPILIKSTPEGARDYVVPSRLYPGKFYALPQSPQIFKQICM
                     IAGLDKYYQIARCFRDEDLRADRQPEFTQLDVEFSFATREQVYRLIEGLLVRVFRLVG
                     AELPAQFPRLSYAEALRRFGSDKPDLRYGMELQDLSAAVGGTTFAPFASALEKGGEVK
                     GLVVRGGAHLSRKALDELQEFVRRYGAGALAWVKLGDELHSSLLKALGEEAVTRMASA
                     AGAEKGDAVLVVAGGAKTVAASLGALRIEVARREKLAPQGAFAPLWVTEFPMFEYDES
                     DGRYYAMHHPFTSPLDEDLPLLESALEGGETDLLGRIRAKAYDTVVNGIEVAGGSVRI
                     HRRDVQRLVFKALGLSEEKARARFGFFLDALEYGTPPHGGIASGIERLMMALTGIENI
                     RDVMAFPKTASAADLMIDAPGEIEAQQLDELRIRIAED"
     gene            complement(4753..6153)
                     /gene="hisS"
                     /locus_tag="VD968_03040"
     CDS             complement(4753..6153)
                     /gene="hisS"
                     /locus_tag="VD968_03040"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR00442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HYE13399.1"
                     /translation="MPGKTQPARGMRDFLPADVRRREHVINAIKGVYERYGFEPMETP
                     AVENIETLMGKYGEEGNQLVFKILKRGEHERTGEADLALRYDLTVPLARVVAEYGDRL
                     PRFFKRYQIQPVWRADRPARGRFREFYQCDVDCIGTRSPVVEAELIAAASDALNSLGF
                     TNFTIRLNHRQVLAGVLEAAGITADKHGDALVALDKLDKVGREGVARELASRGIGAES
                     GDRLLGFFERLPELERAAEFVADGDRAAEVSQRGAYNHAALGRLVEFVGGHDAGALGI
                     ENLRQIVEHVAAYGVADKIKIDPSLARGLSYYTGAIMEINVPDLAGSLGGGGRYDNLV
                     GMFSGRVVPACGFSLGMERIIVVMAERGMFPEDLEGAAADVLVTIWDEESVRDSLAFA
                     AALRREAPGLRVDVYPEADKLGKQLKYASSRGVPFVVVIGDEERARGEVALKKMKTGE
                     QRTVKREEAARALRDD"
     gene            complement(6158..6823)
                     /locus_tag="VD968_03045"
     CDS             complement(6158..6823)
                     /locus_tag="VD968_03045"
                     /inference="COORDINATES: protein motif:HMM:NF020965.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyloxyacyl hydrolase"
                     /protein_id="HYE13400.1"
                     /translation="MIRNGGAVVILLLLAAAAAAQERASLAPGGSSVKPAAGDGEQLI
                     GGSYGSERPVNEYGVWGGFSPGSPTLIGKTEGARLGVVAVRFARLLARGDHVALKYTL
                     DAVPLASLSFPAGGGERKTITGAGLSPVGFQVNFRRREKWQPFAQASGGFLYFGERVP
                     DRDGAQFNFTADFGGGVQWKVGARRAWTVGYRYQHLSNGYRAANNPGFDANLFYVGYS
                     IFR"
     gene            complement(6831..7358)
                     /locus_tag="VD968_03050"
     CDS             complement(6831..7358)
                     /locus_tag="VD968_03050"
                     /inference="COORDINATES: protein motif:HMM:NF012360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HYE13401.1"
                     /translation="MIRPFRGKSPQIHPTAFVEDSAQIIGDVHIGAGSSVWFGAVVRG
                     DVYYIRIGERTNIQDGSVVHVANGTHATILEDEVTVGHNVTLHGCRVGRGCLVGMGSV
                     VMDGVEVGEKSLIAAGALVSPGTIIPPRSLVMGFPAKVKRELTDEEVAGLDVFWQNYV
                     GYTRQYREEYGIEGE"
     gene            7509..7679
                     /locus_tag="VD968_03055"
     CDS             7509..7679
                     /locus_tag="VD968_03055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13402.1"
                     /translation="MPTETPPPYFPQNPLSPGDEKTARRVRLAFYGCAALAALAVLAA
                     VVGLVYLVRSLL"
     gene            7708..9663
                     /locus_tag="VD968_03060"
     CDS             7708..9663
                     /locus_tag="VD968_03060"
                     /inference="COORDINATES: protein motif:HMM:NF019239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13403.1"
                     /translation="MDRRNPPLLLFGAAALTLLLAPLCAAARDSRKASDEWLSVRSQN
                     FLVVGQAGEDEMRRAAQRLEEYRAAFSRLLSGEHFDFSVPTTVILFRDDAAYTPYKPL
                     LGGRLAAGVAGHFQPGAEVNYITIALDSEGGRDSSTLLHEYAHLLVNNYFRLAPLWVK
                     EGLAEYYSTARLSKDRRRLTLGGPIRARARALRAGAWLPLRTLFAVDQQSPHYFEAGK
                     RGEFYAESWALVHYLMSAGRREQFSRLLGLLAEGATIDDALREALHTDAAALEAELLA
                     YVAANRYAERTEAIDGARAAAEQMPVRALSRAESLYYLGDLLLRSDRRDAAEEHLRRA
                     LEADPSLAAANVSIGVLLKARGSYAEARAHLERATASDPSSHLAHYHLADTLYREGVG
                     EGLKEPSISAFEEKTSRVRAGLVRASEIAPGFVEARKLLAAVELDRGAGPDEAAAVLV
                     RALAVAPRRADLKLLLAQALTAKGDFAGARRLTAEVEAHGGDPLLREQARRVFAHIAE
                     REEREAAAREREREEAARAEQAEAAEPGPLQPCDMPLRGPQRKALRFDGAQACGRLLR
                     IECDEGDSVSLLFEGGERILRLRAAALNRIRFVTYTAQVKTGQLTCGPRQPADYVLVT
                     YRPRRDDKSATDGEAVAVEFIPEGWNN"
     gene            complement(9698..10135)
                     /locus_tag="VD968_03065"
     CDS             complement(9698..10135)
                     /locus_tag="VD968_03065"
                     /inference="COORDINATES: protein motif:HMM:NF025719.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsbRD N-terminal domain-containing protein"
                     /protein_id="HYE13404.1"
                     /translation="MPLTEIANRIESGAGRLVEAWVEAVRSDATIRSDEDLTEGGLVD
                     HVPQLIEEVCAVLRSGRRPTIENTHEARVHAYTRFRQGYRARDLVRETSLLRTILSDH
                     VAGLLRAPRGHADPLPHLEAIRTINLYMDEELRYAVSIYTESQ"
     gene            complement(10113..10502)
                     /locus_tag="VD968_03070"
     CDS             complement(10113..10502)
                     /locus_tag="VD968_03070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13405.1"
                     /translation="MISQDDFDQFVSNYNNDYQYLLTRASRGSYDCLISSFIVLKDLH
                     DVIMKLHETTQLEFRVVAYPLTFRGSDAFLRGLGFDGEEIARIYGFLRHVKLTQGKEF
                     EECVEEGVAFCGVGAPPQQRNAPDRDS"
     gene            complement(10742..>12350)
                     /locus_tag="VD968_03075"
     CDS             complement(10742..>12350)
                     /locus_tag="VD968_03075"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE13406.1"
                     /translation="EARRADVLASIIKTSDDAIFSKTLDGTITSWNAGAERLYGYAAP
                     EVLGRSVSLLIPPGQAGELDSILERLRRGEHVDHYETERVRKDGSRVNVSLTVSPVEG
                     EGGRVVGASVIARDITGRLRAEAERARLLGQERRLRAEAEEASRLKDEFLATVSHELR
                     TPLTAIQGWALLLNSGQLDDAAARRAAAVIERNARAQKQIINDLLDVSRFISGKMRLE
                     VERVALGRVVAEAVEAVRLAAQAKGIEIEGPGADQPDVHVSGDPDRLQQIVWNLLTNA
                     VKFTPQGGRVAVALTERDGHAEISVSDTGCGIAPDFLPYVFDRFRQADGSTTREHGGL
                     GLGLAIVRHLVELHGGTVRAESEGSGSGCVFTVRLPLLRDAERGLRIDEGKDGGRIDE
                     GYEIRNPSPAFLSGLRVLVVDDDAETLALLRTMLAGRGAEVSAASSAGEALAALERDG
                     ADVLVSDIGMPGGDGYELIRRVRAGEAAAGLPAARRVPALALTAYARAEDSVRALAEG
                     FQAHLAKPVEPAELWRAVARLGRGLGV"
BASE COUNT         1815 a         4300 c         4251 g         1984 t
ORIGIN      
        1 agatagtgcc gccgaagttg cgccccgtga cgccgcctat caggtcgaag gctatcgagc
       61 cggccgtgat ggcgagctgc acggcgagcc cctgcgcggc gtggaagcgc gtgcgcgtct
      121 cagtgcgcgg gacgatgatt agctcgacga cggccgcgac caggcctatc cagaatggca
      181 ggtagggcag cacgttcgcg atgttctcgg gtatgccgag cttctcgacg gggcgcgagc
      241 ttgggccggg ctgctgctgg tagccgtagg cgcccgcggg gttgtagggc gacgaaggcc
      301 ccggaggcgg cgccgtggtc gcgggcggct ggtgcggccc cgcgccgaaa gtcgtgaagg
      361 gctgcggctg cggcgcgcgc ggcggctggt acgtgggcgg cacgaagaca gacgggtacg
      421 agtcagacag ctcctcgccg aaacggcgcg tcggctcttc gagagcgggg tcgcgacgag
      481 gcaggggcgt tgtctcctcg cccgcgccga cgccgcccgt cccgcccatg agcggctctg
      541 ttcgccgcac gaagtcgggg tcgagcgggt ctgtgtcgta cttgctcttc ttctccgtca
      601 tgccgtcttt tacgaatcga gcggcgctcg ggttctcttg cggcctaccc tccgccctcc
      661 agcgccgcgg gctcccagcg cccctccctc tcggagatgc ggaaggcgcg cacgacgcac
      721 tcgccgcccg cgcgcgagcc gattatcaaa taaacggccg aaggataaaa ggcgagcctc
      781 acgtccgtcg gcgacggccg cggctcttcc gagcgcgggt gcgagtggta tatcgccacc
      841 agctcctcgc cgcgctcgcg catgaggcgc tgcgcggcga aaagctcctc gggcgcggcc
      901 tcgtaggccg tgagcctgtc gccggccacg ttgcgcagcc gatagaccga ctcggcccgc
      961 cccgcgcgcc cgcccaggag gccgcagcac tcctcgggcg ccgcctcgcg cgcgtgcgcg
     1021 caaagctgct cggccagctc gcgcggaagc tttatggccg ggaggctcgc tgtcacggcg
     1081 gtcagagccc ctcacctgcc gcgcagctcg ttcttgacga cggcgccgcc cttcattacg
     1141 aaggcgacgc gctcgagctc ggtcacgtcc ctgagcgggt cgccgcggac ggcgatgagg
     1201 tcggcgaagc ggccggcctc gagagtgccg acgcggtctg accagccgag caggtctgcg
     1261 gcgttaaggg tcgcggcctg tatggcctgc gcgggagtca tgccccagcg aaccatgtgc
     1321 gcgaactgct tgccgttcca cccgtgcgga tagactccgg cgtccgtgcc gtaggccacc
     1381 ttgacgccgg cgcggacggc cttctggaaa ttctcgcgct gcgtgcgccc gacgagcttc
     1441 tccttctcga ttatcttgtc ggggtagccg aggcgcgaga actccgcgag gatgtagtcg
     1501 tcgttataga cgtcggctac gaggtaggtg ccgcgctgct tcatcaggcg tatgccctcc
     1561 tcgtcgagga aagagccgtg ctcgatggag gcgacgccgg cccggacggc gcgcttgatg
     1621 ccctcggccc cgtgcgcgtg cgcggcgacc ttcctgcccc acatcgcggc ctcgtccacg
     1681 gccgcggcca tctcctcctg cgtgtactgc ggggcgccga cggactcctc ctcggagagc
     1741 acgcccgcgg tcgcgacgag cttgatcaag tcggcgccgt tcttgacctc gaagcgtatg
     1801 agcttgcgta tctcggcctc gccgtcggcg atgcccgaga actggccgaa cttgatgtag
     1861 ggcgagaagc ccgtgaggtc tgcgtggccg cccgtcgcgc cgacggcgag cgtggcgacc
     1921 tgcatgcgcg gcccttgaat ggtgcccgcg ttgatggcgt tgcgcagcgc gacgtctatg
     1981 aactcgccgg agcccacgtc gcgcacggtc gtgaaccctg cctccagcgt gcgccgcgca
     2041 taaacgtgcg cgacgacggc gtagtcaatg gggctgcggc ggaagatgtc ctcgtagtag
     2101 ttggtcggct gcgaggtgat gtgcgtgtgg cagtctatga ggccgggtag gatggtcgcg
     2161 tcgccgaggt ctatgacttc gaccccggcc ggcacgctca ggcgcgcgcc cgcggccgtg
     2221 acgcgctcgc cctctacgag cacgacggcg tcgcgcacga ccgagccgct ccgcacgtct
     2281 atcatccgcg cggcgcgaac cgcgagccgc ttcggcgccg cggccttctc cgccccctgc
     2341 cccgactgcg agcgcgcccc gggctgccaa gctagcagcg acaaaagcag tgcgcagacg
     2401 aaacgtttca ttctcttctc ctccgtcaat gcccgcgccc ggcttcgagc gcccgcctga
     2461 gtgtggcgag cgcgccgagg tggtaagcgt tgtggtcggc gacgagcagc gcctcgcgca
     2521 ggactgtctg gccgtcgccg tgaggtatcc gcgcgtagag gtcaacggac gggtctgcga
     2581 caagctcctc caccgccccg aggtctgcgc ggaaggcttc ggcgctcgcc cgccacgcgg
     2641 cctcgtcggc ctcggcgccc tccggcggcc agtatccctc gggccacggc ggcgagacgt
     2701 gcgcggccga gcggctgaac tccagtatgt cccactgcgc gatgcgcatg tgctccagaa
     2761 gccgccaggg cgtgtacggc actcctgcgg cacgcccgtt cattagcccg gcggggaagt
     2821 cgttaaccac ctcgtcgaac ttgatgtgcg cgcctccgcc ccgtagaagg tagagcaggt
     2881 gctcgcgcag ggctcggtct ctgtctccgt cactcatggc ttgaaaacgc ctttcagtct
     2941 tccgcgatgc gtatgcgaag ctcgtccagc tgctgcgcct ctatctcacc gggcgcgtct
     3001 atcatgaggt ctgcggccga ggcggtcttg gggaaggcca tcacgtcgcg tatgttctcg
     3061 atgcccgtga gcgccatcat aaggcgctcg atgccggagg cgatgccgcc gtggggcggc
     3121 gtgccgtact ccaaggcgtc gaggaagaag ccgaagcgag cgcgcgcctt ctcttctgag
     3181 aggccgagcg ccttgaagac cagccgctgc acgtcgcggc ggtggattct taccgagccg
     3241 cccgccacct ctatgccatt gacgacggtg tcgtaagcct tcgcgcgtat ccggccgagc
     3301 aggtccgtct cgccgccctc gagcgcgctc tctaggagcg gcaggtcttc gtcgagcggc
     3361 gacgtgaacg ggtggtgcat cgcgtagtat cgcccgtccg actcgtcgta ctcgaacatc
     3421 gggaactccg tcacccacag cggcgcgaac gcgccctgcg gcgcgagttt ctccctgcgc
     3481 gcgacctcga tgcgcagggc gccgagcgag gccgcgaccg tcttcgcgcc ccccgcgacg
     3541 acgagcacgg cgtctccctt ctccgccccg gccgccgacg ccatgcgcgt caccgcctcc
     3601 tcccccaatg ctttcaggag cgacgagtgc agctcgtcgc cgagcttgac ccaggcgagc
     3661 gcgcccgcgc cgtatcgcct gacgaactcc tgcagctcgt cgagagcctt gcgcgacagg
     3721 tgcgcgccgc ccctgaccac gagccccttg acctcgccgc ccttttcgag cgccgaggcg
     3781 aagggcgcga acgtagtccc accgaccgcc gcggagaggt cttgcagctc catcccgtag
     3841 cgcaggtcgg gcttgtccga gccgaagcgg cggagcgcct cggcgtaaga aagccgaggg
     3901 aactgcgccg gaagctccgc gccgacgagg cggaagacgc gaaccagcaa gccttctatc
     3961 agcctgtaaa cctgctcgcg cgtggcgaag ctgaactcaa cgtccagctg cgtgaactcg
     4021 ggctgtcggt cggcccgcag gtcttcgtcg cggaagcagc gcgctatctg gtaatacttg
     4081 tcgagcccgg cgatcatgca aatctgcttg aagatctgcg gcgactgcgg cagcgcgtag
     4141 aacttccccg gatagaggcg cgaaggcacg acgtagtcgc gcgccccctc gggcgttgac
     4201 ttgatgagga tgggcgtctc tatctcggtg aagccctgct cgttcatgta ggagcgaatc
     4261 tccgcgacgg cgcggtggcg aaggcgcagg ttggactgaa gctgcgggcg gcgcaaatcc
     4321 aggtagcggt acttgagacg cacctcctcg gccgcgagct tgtcgggcgg ggcgtcgagc
     4381 tggaagggcg gcgtgcgcgc ttcgttgagg acgagaatct ctcgcgcgcg aacctcaatg
     4441 tcgccggtcg agagcttggg gttgcgcgcc gactcgtcgc gcagcacgac ttcgccgcgg
     4501 acggcgacga cgtactcgcc gcgaacctcc ttggcacgcg cgtgcgcctc gccggcctcg
     4561 tcggcgtcga agacgatctg cgtcaacccg tcgcggtctc tcaagtcaac gaaagtcagc
     4621 ggcccgaagt cgcggcgcac cgcgacccag cccatcaaga cgacggtctt cccggcgtcc
     4681 cccgcgcgca gctcgccgca cgagtgtgtc cgctccaact ctcccaggtg gtcaaggttg
     4741 attgccataa tcttaatcat cgcgcagcgc gcgggccgcc tcttcgcgct ttacggtgcg
     4801 ctgctcgccg gtcttcatct tctttagcgc gacctcgccg cgcgctcgct cttcgtcgcc
     4861 gatgacgacg acgaagggga cgccgcgcga ggaggcgtac ttgagctgct tgccgagctt
     4921 gtcggcctcg gggtaaacgt ccacgcgcaa cccgggcgcc tcgcgcctga gcgcggcggc
     4981 gaaggcgagc gagtcgcgca ccgattcttc gtcccatatc gtcacgagca cgtctgccgc
     5041 agcgccctcc aaatcttccg ggaacatccc gcgctcggcc atgacgacga tgatgcgctc
     5101 catgcccagc gagaagccgc acgcggggac tacgcggccg gagaacatgc cgacgaggtt
     5161 gtcgtagcgc ccgccgccgc cgagagagcc ggcgaggtcg gggacgttta tctccataat
     5221 cgcgcccgtg tagtaggaga ggccgcgcgc gaggctcggg tcaatcttta tcttgtcggc
     5281 gacaccgtag gccgctacgt gctcgactat ctggcgcaga ttctctatgc cgagcgcgcc
     5341 tgcgtcgtgg cctccgacga actcgacgag gcggccgagc gcggcgtggt tgtacgctcc
     5401 ccgctgagac acttcggccg cgcggtcgcc gtcggcgacg aactccgcgg cgcgctcaag
     5461 ctcgggcagc ctctcgaaga agccgagcag ccggtcgccg ctctcggccc ctatgccgcg
     5521 cgaggcgagc tcgcgcgcga cgccctcgcg gccgaccttg tcgagcttgt cgagcgcgac
     5581 gagggcgtcg ccgtgcttgt cggccgttat ccccgcggct tcgaggacgc ctgcgagcac
     5641 ctgccggtgg ttgagccgga tggtgaagtt cgtgaagccg aggctgttga gcgcgtcgct
     5701 cgcggcggcg attagttcgg cctcgacgac gggcgagcgg gtgccgatgc aatcaacgtc
     5761 gcactggtag aactctcgga agcggccgcg cgcggggcgg tctgcgcgcc agacgggctg
     5821 aatctggtag cgcttgaaaa acctggggag cctgtcgccg tactctgcga cgacgcgcgc
     5881 gagcggcaca gtcaggtcgt agcggagcgc gaggtctgcc tcgcccgtcc gctcgtgctc
     5941 gccgcgcttg aggattttga agacgagctg gttgccctcc tcgccgtact tccccatgag
     6001 cgtctcgatg ttctcgaccg ccggagtctc catcggctcg aagccgtagc gctcatagac
     6061 gcccttgatg gcattgatga cgtgctcgcg ccgccgcacg tcggcgggca ggaagtcgcg
     6121 catgccacgc gccggttgtg ttttacctgg catccgttca gcggaagatc gagtagccga
     6181 cgtagaaaag gttcgcgtcg aagccggggt tgttcgcggc gcggtagccg tttgagaggt
     6241 gttgatacct gtagccgacc gtccacgccc ggcgcgcgcc gaccttccac tggacgccgc
     6301 cgccgaagtc ggccgtgaag ttgaactgcg cgccgtcgcg gtcggggacg cgctcgccga
     6361 agtagaggaa gccgccgctc gcctgcgcga agggctgcca cttctccctg cgacggaagt
     6421 tcacctggaa gccgacgggc gagaggcccg cgcccgtaat ggtctttcgc tcgcccccgc
     6481 ccgcggggaa agagagcgag gcgagcggga cggcgtcgag cgtgtacttg agcgcgacat
     6541 gatcgccgcg cgcgagcagg cgcgcgaagc ggacggcgac gacgccgagg cgcgcgccct
     6601 cggtcttgcc gatgagcgtc ggcgagcccg gcgagaagcc gccccagacg ccgtactcgt
     6661 tgaccggcct ctcggagccg taagagccgc cgatgagttg ctcgccgtct ccggccgccg
     6721 gcttcacgct tgagccgccg ggcgcgagcg aggcgcgctc ctgcgccgcc gctgcggccg
     6781 cgagcaaaag caggatgacg acggctccgc cgttgcgaat catggccccc tcattcgcct
     6841 tcgatgccgt actcctcccg gtactggcgc gtgtagccga cgtagttctg ccagaacacg
     6901 tcgagcccgg ccacctcctc gtcggtcaac tcccttttga ccttagcggg gaagcccatg
     6961 acgagcgagc gcggcgggat tatcgtgccg ggcgagacga gcgcgcccgc cgctatcaga
     7021 gacttctcgc cgacctcgac gccgtccatc acgaccgagc ccatcccgac cagacacccc
     7081 cggccgacgc ggcagccgtg gagcgtgacg ttgtggccga cggtcacctc gtcttccaga
     7141 atggtcgcgt gcgtgccgtt ggcgacgtgg acgaccgagc cgtcctgaat gttggtgcgc
     7201 tcgccgatgc gtatgtagta aacgtcgccg cgcacgactg cgccgaacca gacggacgag
     7261 ccggcgccga tgtgcacgtc gccgattatc tgcgcgctgt cctcgacgaa cgcggtaggg
     7321 tgaatctgcg gcgacttgcc tcggaagggt cgaatcataa aggggcgggc gctcctgctg
     7381 aaaaaggctt acggctcggt ggcgaaaacg tagcacggcc gccgcgcgcc gggcaagcaa
     7441 ggcggtaacc gcgacccgcg gccgttcgtg ctacaatcgc ccggccggct taaggagaga
     7501 agagagacgt gccgacggag accccgcctc catacttccc gcagaatccg ctctcgccgg
     7561 gagacgagaa gacggcccga agggtcaggc tcgccttcta cggctgcgcc gcgctcgctg
     7621 cgctggccgt cctcgccgcc gtagtcggat tggtttacct cgtccgctcg ctcctttaag
     7681 cggcccgccg ggctgccgcg ttaagtgatg gacagacgaa atccccccct cctgctcttc
     7741 ggcgcggcgg cgctcacgct gctgctcgcg ccgttgtgcg ccgcggcgcg cgactcccgg
     7801 aaggcgagcg acgagtggct gagcgtgcgg tcgcagaact tcctcgtcgt cggccaggcg
     7861 ggcgaggacg agatgaggcg cgccgcgcag aggctcgaag agtaccgcgc tgccttctcg
     7921 cgcctgctct ccggcgagca cttcgacttc tcagtcccca cgaccgtcat tctcttccgc
     7981 gacgacgcgg cctacacgcc ctacaagccc ctgctcggcg gcaggctcgc cgcgggcgtc
     8041 gccggccact tccagcccgg cgccgaggtc aactacatca ccatcgcgct agactccgaa
     8101 ggcgggcgcg actcttccac actcctgcac gagtacgcgc acctgctcgt caacaactac
     8161 ttccgcctcg cgccgctttg ggtcaaggag gggctcgccg agtactacag cacggcacgc
     8221 ctctcgaaag accgcaggcg ccttacgctc ggcggcccga tacgcgcccg cgcgcgggcg
     8281 ctgcgcgcgg gcgcgtggct ccccctgcga acgctcttcg ccgttgacca gcagtcgccc
     8341 cactacttcg aggccgggaa gcgcggcgag ttctacgccg agtcgtgggc gctcgtccat
     8401 tacctgatgt ccgcgggcag gcgcgagcag ttctcgcgtc tgctcgggct gctggccgaa
     8461 ggggcgacga ttgacgacgc gctgcgcgag gctttgcata cggacgccgc cgcgctcgaa
     8521 gcagagcttt tggcttatgt cgcggcaaac aggtacgcgg agaggactga ggcgattgac
     8581 ggcgcgcgcg cggccgcaga gcagatgccc gtccgcgctc tctcgcgcgc ggagtcgctc
     8641 tactacctcg gcgaccttct gctccgctcg gacaggcgcg acgcggccga ggagcacctg
     8701 cgccgcgcgc tcgaagccga cccgtcgctc gccgccgcca acgtctcgat aggcgtgctg
     8761 ctcaaggcgc gggggagcta cgccgaggcg cgcgcgcatc tcgaacgcgc gacggcctcc
     8821 gacccgtcca gccacctcgc ccattatcac ttggccgaca cgctctaccg cgagggcgtt
     8881 ggcgagggct tgaaggagcc ttcgatcagc gccttcgagg agaagacctc gcgtgtgcgc
     8941 gccgggctcg tgcgcgcctc ggagattgcg ccgggcttcg tagaggcacg gaagctcctc
     9001 gcggccgtcg agctcgacag gggcgccggc cccgacgagg ccgccgcggt gcttgtgcgc
     9061 gcgctcgctg tggcgccgcg ccgcgccgac ttaaaactgc tgctcgcgca ggccctcacc
     9121 gcgaagggcg acttcgcggg cgcgcgcagg ctcacggccg aggtcgaggc ccacggcggc
     9181 gacccgctgc tgcgcgagca ggcccgcagg gtcttcgcgc acatcgccga gcgcgaggag
     9241 cgcgaggccg cggcgcgcga gagggagcgc gaagaggctg cgcgcgccga gcaggccgag
     9301 gcagccgagc ccggcccctt gcagccctgc gacatgcccc tgcgcgggcc gcagcgtaag
     9361 gcccttcggt tcgacggcgc ccaagcctgc ggccgcctcc tgcgcataga gtgcgacgag
     9421 ggcgactccg tctcgctcct cttcgagggc ggcgagcgca tcctgcgcct gcgcgcggcg
     9481 gcgctcaacc gcatacgctt cgtcacctac acggcgcagg tcaagacggg ccagctcacc
     9541 tgcggcccgc gccagcccgc cgactacgtc ctcgtcacat accgcccgcg ccgcgacgac
     9601 aagtccgcaa cggacggcga ggccgtcgcc gtcgagttca tccccgaagg ctggaacaac
     9661 tgaaaagaag tagtcagtag aaaggcagtc ctactggcta ctgtgattcc gtgtagatgg
     9721 agacggcgta gcgcagctct tcgtccatgt agaggtttat ggtgcggatg gcttcgaggt
     9781 gcgggagcgg gtctgcgtgg cctctggggg cgcgaagcag cccggcgacg tggtcggaga
     9841 ggatcgtgcg tagcagcgag gtctcgcgca cgaggtcgcg ggcgcggtag ccctggcgga
     9901 agcgcgtgta ggcgtggacg cgcgcctcat gcgtgttctc gatggtcggc cggcggcccg
     9961 agcgcaggac ggcgcagact tcttcgatta gctgggggac gtggtcaacg aggccgccct
    10021 ccgtcaagtc ttcgtccgag cggatggtgg cgtccgaccg aacggcctcg acccacgcct
    10081 cgaccagccg gccggcgccc gactctatac ggttagctat ctcggtcagg ggcatttcgt
    10141 tgttgcggcg gcgcgcccac cccgcagaag gccacgccct cctcgacgca ctcctcgaac
    10201 tccttgccct gggtgagctt cacgtggcgg aggaagccgt agatgcgcgc tatctcttcg
    10261 ccgtcgaagc ctaagccccg gaggaacgcg tcgctcccgc ggaacgtgag cgggtaggcg
    10321 accactcgga actcaagctg cgtcgtctcg tgcagcttca ttatcacgtc gtgcaggtct
    10381 ttcaggacga tgaacgacga gatcaggcag tcgtagctgc cgcggctcgc gcgcgtcagc
    10441 aggtactggt agtcgttatt gtaattcgag acgaactggt cgaaatcgtc ctggctgatc
    10501 atcaaggcgc tcccctggcc gaagccttct ccgcgggtgt ggaaggggga acgcggtcgg
    10561 tctgcacgtc ggcggtgttc gttgtcggcg cgcgtcgccc gcttcgcctt cgacgagaaa
    10621 cctcgtgggg gagagagacg gcctcggtcg tcgcgctcgg gcggccgcgg cgcgcggccc
    10681 cgtttcttta cgccaactgc cgtgcgggag tcaatccccg ccgcgcgctt tcgcgccggg
    10741 gtcagacgcc caggccgcgg ccgaggcggg ccaccgcgcg ccaaagctcg gccggctcga
    10801 cgggcttggc gaggtgcgcc tggaagcctt cggcgagcgc gcgcacgctg tcctcggcgc
    10861 gggcgtaggc cgtgagcgcg agcgccggga cgcggcgcgc ggccgggagg ccggccgccg
    10921 cctcgcccgc gcgcacgcgg cgtatcagct cgtagccgtc gccgccgggc atgcctatgt
    10981 cgcttacgag cacgtcggcg ccgtcgcgct ccagcgccgc gagcgcctcg ccggctgacg
    11041 aggcggcgga gacttctgcc ccgcggcccg cgagcatcgt gcgcagcagc gcgagcgtct
    11101 cggcgtcgtc gtccacgacg agcacgcgca gcccgctcag gaatgcgggg ctcgggttgc
    11161 ggatttcgta cccttcatca atacggcccc cgtctttgcc ctcgtcaatc cgcaacccgc
    11221 gctccgcatc ccgcagtaaa gggagcctga cggtgaagac gcagccgctc cccgagcctt
    11281 cgctctcggc gcgcacggtg ccgccgtgca gctcgactaa atggcggact atcgcgagcc
    11341 cgaggccgag gccgccgtgc tcgcgcgtcg tcgagccgtc ggcctggcgg aagcggtcga
    11401 agacgtaagg caggaagtcc ggcgcgatgc cgcagccggt gtcgctcacg gaaatctccg
    11461 cgtggccgtc gcgctccgtg agcgcgacgg ccacacgccc gccctgcggc gtgaacttga
    11521 cggcgttcgt gagcaggttc cagacgatct gctgtaggcg gtcggggtcg ccggagacgt
    11581 ggacgtctgg ctggtcggcg cccggcccct ctatctcgat gcccttcgcc tgggccgcta
    11641 gccgcacggc ctcgaccgcc tcggctacca ccctgcccag agcgacgcgc tcgacttcga
    11701 gccgcatctt ccccgagatg aagcgcgaaa cgtcgagcag gtcgttgatt atctgcttct
    11761 gcgcgcgggc gtttcgctcg atgacggccg ccgcgcgtcg cgccgcagcg tcgtctagct
    11821 ggcccgagtt gagcagcagc gcccagccct gtatggcggt gaggggcgtg cggagctcgt
    11881 gcgagacggt ggctaggaac tcgtccttga ggcggctcgc ctcctctgcc tctgcgcgca
    11941 ggcgccgctc ctgtccgagc aggcgcgcgc gctcggcctc cgcgcgcagg cgccccgtta
    12001 tgtcgcgcgc gattacggag gcgccgacga cgcggccgcc ctcgccctcg acgggcgaga
    12061 ccgtgagcga gacgttcacg cgcgagccgt cctttcgcac ccgctcggtc tcgtagtggt
    12121 caacgtgctc gccgcggcgc aggcgctcga gtatggagtc gagctcgccc gcctgcccgg
    12181 gcgggatgag cagcgatacg ctacggccca agacctcggg ggccgcgtag ccgtagagcc
    12241 gctcggcgcc ggcgttccag ctagttatcg tgccgtcgag cgtcttgctg aagatggcgt
    12301 cgtcggaggt cttgattatc gaggccagca cgtcggcgcg gcgcgcctcg
//
LOCUS       DASPKR010000105        12699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_788454, whole genome shotgun sequence.
ACCESSION   DASPKR010000105 DASPKR010000000
VERSION     DASPKR010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12699)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12699
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_788454"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(34..330)
                     /locus_tag="VD968_03080"
     CDS             complement(34..330)
                     /locus_tag="VD968_03080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13407.1"
                     /translation="MSDQGSRTLVIQRVHEEARDIRAFDALPEGAAPPHGLDFRPGQV
                     ARLRVGAAGAAYFAIASAPEDDEIEFLVKLSNDPASRALYETGVGRTLSRRDWT"
     gene            496..1707
                     /locus_tag="VD968_03085"
     CDS             496..1707
                     /locus_tag="VD968_03085"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE13408.1"
                     /translation="MKRSPLVVILLTVFIDLVGFGIVIPVLPYYLESERFRASPIALG
                     LLFSSYSVMQLIFSPVLGRWSDRHGRRPVLLLSLIGSGVGFVILGAAETLLMLFVGRI
                     IAGITGGNISTAQAYIADVTTPEDRAKGMGLFGAAFGLGFIFGPAIAGVLSPIDISLP
                     FYFAGALSFANAVLLYFTLPETVTPGHPARSTRRGWAHFAHSLRQRRLALVVGIYFLF
                     VVAFSIMTTVFALFTMYRFGYDAAHNGYLFAYIGLLAVIVQGGLIGRLVRRYGELPLV
                     IVGALLLGINLIILPYVGPLAGGIAGLLAVMTCFSIGNSFATPTLTSLASKSVGEAEQ
                     GGVMGVTQSAASLARAIGPAVGGWLIYSATAPRHIDDNSVRLTFFTASGIMFAALALA
                     LYLRREPEPLG"
     gene            complement(1720..2172)
                     /locus_tag="VD968_03090"
     CDS             complement(1720..2172)
                     /locus_tag="VD968_03090"
                     /inference="COORDINATES: protein motif:HMM:NF016246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HYE13409.1"
                     /translation="MLPIYTIGHGRHAFADFLALLRRYEVELVCDVRSAARSRWPQFN
                     GRVLAESLKENGIGYEWLPECGGKVVAPPEELARGIDRIMELASDARVALMCSESRPL
                     TTHSRPRANCHRVGLLGPPLRARGARLVHILPDGDAIEIDETAVPSIW"
     gene            complement(2225..2833)
                     /locus_tag="VD968_03095"
     CDS             complement(2225..2833)
                     /locus_tag="VD968_03095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13410.1"
                     /translation="MKGIGPGRVRDILDHEPKYVRVERERRYLLRALPEGVSLRDEHA
                     QITDNYITGTRLRLRKSRWVPTGEWSLKLTQKHAPAPPDFSRALITTLYLNRAEYEAL
                     SVFEANEIRKNRYYLRRDGRLYSVDVFLGDLHGLILAETDFDSDEEMDAFPPPPFAFA
                     DVTREELFTGGRLAYLSADGLRDGIKDVVSSQQSVAAPCRDD"
     gene            complement(2830..4836)
                     /locus_tag="VD968_03100"
     CDS             complement(2830..4836)
                     /locus_tag="VD968_03100"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HYE13411.1"
                     /translation="MTAGERAAAKRPDRVRFGGRVLFLTEDVSLVRRQLEAGEDLGYD
                     PERPLMNNISTDEITPGWVCFYYDETLGEYVYVGMREGAVRKDEVKRGGFSVVVSGLS
                     KGCGSSRETAPFAEKAAGVELVIAKTIEKIYGQNCQNIGLLTSTDFGLIERIRRGEEI
                     PLEEFTRGLDPLSKAIVEHGGLFSYNKARLAGRVEPPAIGTKRRPMNIVEKIIARHAF
                     VRAGQIGVEAVRPGDALFAVADVRFSHEYVTPMAESLFKQALGRDARVTEPESVFAFR
                     DHLTFLGRVMPEDKKKMGLLERANGLATTQESFTDQQGIRLYGGTEERGSEAICHNAV
                     VEDIALPGQLVIGTDSHTCMAGVLGCFAFGVGSTDMANAWYTKDIRVKVPETVRFVLK
                     GSKRADVSAKDVMLVILATDYMKEGKGIGQVLEFAGEGLRDWPIDERATLTNMAVEAG
                     GFTGIIEPDEVVLEYLTRTRGLNAEEVRGGFLRSDPDAEYAASFEIDLSEIRPMVATP
                     GDPRNGIPVEELGEPVKIDIAYGGSCTGGKMADMDMYAAVLGRAVEQGRRVAPGVHLY
                     LQFGSQKIKEYARSRGYIEIFERAGAELIDPSCGACINAGPGASRDPEQVTVSAQNRN
                     FPGRSGPGKVYLASPYVVAASAIAGRIVAPEEFLREPEGELVGA"
     gene            4988..5638
                     /gene="can"
                     /locus_tag="VD968_03105"
     CDS             4988..5638
                     /gene="can"
                     /locus_tag="VD968_03105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000651584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0015976 - carbon utilization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HYE13412.1"
                     /translation="MSDLKELLENNRAWSEGIKAHDPGFFRALERQQSPRYLWVGCAD
                     SRVPATQLVGLLPGELFVHRNVANVVVHTDFNCLSVLQFAVDVLKVEHVIVCGHYGCG
                     GVQAAMKNSRLGLIDNWLRHVQDVMHAHEGRLAGIEDEAARLDRLCELNVVEQVINVG
                     RTTIVQEAWGRGQRLTVHGWIYGVGDGLLRDLGISVTSTEELSAARERAVGASGGV"
     gene            5635..6225
                     /locus_tag="VD968_03110"
     CDS             5635..6225
                     /locus_tag="VD968_03110"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HYE13413.1"
                     /translation="MSAAGAAEPFGLLLIKGFLGEQERREIVAEMRAARGGPATVYGR
                     GGSGSVDERVRSASRLSLPEATVEALRGRLSGLKREVEEHFGLSLGECEEPQFLRYGP
                     GDFFVAHQDGNTGMLRLEQESRLVSVVIFLSRRGEGQDDGDYGGGSLVFHERRGAGRF
                     PLAGEPGDLVAFRAETTHEVTPVTSGERLSIACWYR"
     gene            6321..7154
                     /locus_tag="VD968_03115"
     CDS             6321..7154
                     /locus_tag="VD968_03115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13414.1"
                     /translation="MTIKTRGLLASLLLAAALASGCKPSGETGSNAPGNSAGADNTTA
                     KKTAPPTKPNEDGTIPSGTGVEKEKPSPGKGNVQGRVLYNEKPAAGIEVKLCSTFNRF
                     LGGCGGETFTTKTDANGEYLIKDVPPKTYEGLVVKVFDSDYYVFATSGIVSSAKYKIE
                     EGQTFFAPDTNLFKQDLKLLSPKAGSKVAGDGIEVKWGPYPDAAYYKLSIYADSSSGA
                     QPNYDYIGRRVDGESFSLDKPLTPGTYTVKLEAYNGNDVKLAESSADIKFTVTGDAAA
                     K"
     gene            7166..8101
                     /locus_tag="VD968_03120"
     CDS             7166..8101
                     /locus_tag="VD968_03120"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase family
                     protein"
                     /protein_id="HYE13415.1"
                     /translation="MTETARPAHEPSAEALRWVERAAGTGARVRSASPLAGATSSLLY
                     AVEVERGGVAFELVLRQFASAEWLKEEPDLARHEAEALRRAARAGVPAPELVAFDETG
                     DEAGGRPSTLMTRLPGRVVLRPDDSGAWARGLAEAAVSVHEVPAGDFPWEFYPYTDPA
                     RAAPPEWSSARGLWERAIETARGPRPAFIPRFIHRDYHPNNVLWQGGRVSGVVDWVNA
                     CRGPGGFDVTWCRQNLALLHGVAEADRFLSAYERAAGSGSEYHPYWDLLALTELTAGP
                     PGVYEGWAAFGVEGLTDELTSRRADEYLASVLARV"
     gene            8134..8838
                     /locus_tag="VD968_03125"
     CDS             8134..8838
                     /locus_tag="VD968_03125"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE13416.1"
                     /translation="MSLTERTKAFIRSALPGGVRIYRGVRGLGRRAWRARPPGMEAVF
                     SEIYRRNLWGDAESVSGRGSTLARTRVIREVLPGLLEDLGARTLLDAPCGDFNWMRHV
                     RLAGVSYVGADVVPEIVARNRREHGGPGREFVALDITSDPLPRADVILCRDCLIHLPF
                     RQARSAVENFKRSGSRFLLATTHTLVRENADAPLGGWRSLNLELPPFGFPRPLRLVTE
                     DEEAGKCLGLWRLEDL"
     gene            8856..9659
                     /locus_tag="VD968_03130"
     CDS             8856..9659
                     /locus_tag="VD968_03130"
                     /inference="COORDINATES: protein motif:HMM:NF014536.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,6-N-acetylglucosaminyltransferase"
                     /protein_id="HYE13417.1"
                     /translation="MTPTVGFVLLTHARPAMIRRLADRLDRMFGGPPVVCHHDFSKCD
                     LPVEEFPPNVSFVRPHTVTGWGEFATTEATVRAVRQLYEGPGGPDWFVLLSGADYPVK
                     PAASILEDLRSADCDAFIHHEPIRAGAFENDWQGLCHWRYCAPEPNPFTPEFRCFAGS
                     QWFTAGRRAAEHIIAFHEKNPDTVDRFRGLKLTEECYFQCVLANEPRLRLCNKSLRYT
                     DWSAGGSHPKTLTTEDLPALLATRAHFARKFDDEVDARVLDELDAVVGP"
     gene            10372..>12699
                     /locus_tag="VD968_03135"
     CDS             10372..>12699
                     /locus_tag="VD968_03135"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYE13418.1"
                     /translation="MLIAALVIVSLLGLGALLFALRRLKAGEARRARAEAELAEALKR
                     LEEERRERALADAEAAGRLEALRAEAAEARAALSRAESAPTDTKPDEGEAAGAAEVSD
                     AQALAWSMDAFFQQTTHPRQLLGHETFERGVEVLCSDSYRPHELLAKGLGESVVLACM
                     AFEAMARRADARGSAERIIERLNDIYYWPRFFAMRALEAYARRPVAAEVLARVNSSWQ
                     DSVPSEVLAEFLERRRQAGDPVTFEALARQLERQHVTPYQAGELRVILGQLDHVVPRE
                     VVEQFEAWQDEAGLAESLKTIGRVWEREGGPKGSGEVFVLDSVAERVSEIESALKRDP
                     ARSVILVGDPGVGKTAVVRALADRLGRERWVVFESSAAEVLAGQQYIGQLEERVQTIV
                     RTAGGRRALWFVPNFQETLWAGQHKFSPVGVLDLLMPSIESGLLKIVGEVPSAAYEQL
                     MRLRPKLRTVMQTCRVQPLGDEETLELGRRWAELHGTTRHAWAGMHEGVDTSYVAPRA
                     SRQTLREALQLAKQYLGDKAAPGNLMGLLDATHRRLLAEDGESKAREITPDDLLVTLS
                     QMTGLPLQILDEREGLDLARLRAFFESRVLGQPEAVECLVERVALVKAGLTDPTRPQG
                     VFLFVGPTGTGKTEIAKTLAEFLFGSPDRMIRLDMSEFMAPESLDRILGESHATSDTP
                     ALVNQIRKQPFSVVLLDEFEKAHPQVWDLFLQVFDDGRLTDRRGNTADFRHSVIIMTS
                     NLGATLPAGAGIGFSQEQAQFAAGAVERAVGRAFRR"
BASE COUNT         1986 a         4272 c         4353 g         2088 t
ORIGIN      
        1 ccccggcggc tacgagtggg ccggctcgac cggctacgtc caatccctcc tcgacaacgt
       61 cctccccacc ccggtctcgt agagggcgcg gctcgccggg tcgttcgaga gcttgacgag
      121 gaactcgatc tcgtcgtcct cgggcgcgct ggcgatggcg aagtaggccg cgccggccgc
      181 gccgacgcgc aggcgcgcga cctgtccggg ccggaagtcg aggccgtgcg gcggcgcggc
      241 gccttcgggc agggcgtcga aggcgcggat gtcgcgggcc tcctcgtgga cgcgttggat
      301 gacgagcgtg cgactcccct ggtcactcat aagggcttcc cggcgatgaa tgtttgggtt
      361 tgcggaacgc ggcgagtgta gcgcacggcg gcgcgggccg tccagaaggt gggtttcgag
      421 ttgcgggttt cgggtttcgt gtttaaaact ctctcttcaa cccgaaactc gaaacgcgga
      481 actcgtaacc tctgtatgaa gcgctccccg ctcgtggtca tcctcctgac ggtcttcatc
      541 gacctcgtcg gcttcggcat cgtcatcccc gtcctgccgt actacctgga gagcgagcgg
      601 ttccgcgcct cgccgatcgc gctggggcta ctcttctcgt cctactcggt gatgcagctc
      661 atcttctcgc cggtgctcgg ccggtggtcg gacaggcacg ggcggcggcc cgtcctgctt
      721 ctgagcctga tcgggtcggg cgtcggcttc gtcatcctcg gcgcggccga gacgctcctg
      781 atgctcttcg tcgggcgcat catcgcgggc atcacgggcg gcaacatctc gacggcgcag
      841 gcctacatcg ccgacgtgac gacgcccgag gaccgcgcca aggggatggg gctgttcggc
      901 gcggccttcg ggctcggctt catcttcggc ccggccatcg ccggggtgtt gagccccatt
      961 gacataagcc tgccgttcta cttcgcgggc gcgctctcgt tcgcgaacgc cgtgctgctc
     1021 tacttcaccc tgcccgagac ggtgacgccc ggccacccgg cgcgctcgac ccgcaggggc
     1081 tgggcgcact tcgcccacag cctgcgccag cgcaggctcg cgctcgtcgt cggcatctac
     1141 ttcctcttcg tcgtcgcctt ctcgataatg acgaccgtct tcgcgctctt cacgatgtac
     1201 cgcttcgggt acgacgcggc gcacaacggc tacctgttcg cctacatcgg cctgctggcg
     1261 gtgatagttc agggcgggtt gataggcagg ctggtgaggc gctacggcga gctgccgctc
     1321 gtcatcgtcg gcgcgctgct gctcgggata aacttgataa tactgcctta cgtcgggccg
     1381 ctcgcgggcg ggattgccgg cctgctggcc gtgatgacct gcttctcaat cggcaactcc
     1441 ttcgcgacgc ccacgctcac ctccctcgcg tcgaagagcg tgggagaggc cgagcagggc
     1501 ggcgtaatgg gcgtgacgca gtcggccgct tctctcgcgc gcgccatcgg cccggccgtc
     1561 ggcggctggc tcatctacag cgcgacggcg ccgcgccaca ttgacgacaa ctccgtccgg
     1621 ctcaccttct tcaccgcctc cggcataatg ttcgccgccc tcgcgctcgc cctctacctg
     1681 cgccgcgagc ccgagccgct cggctaaatt ttcctttgct caccagattg aagggacggc
     1741 ggtctcgtca atctctatcg cgtcgccgtc gggcaggatg tgcacgaggc gcgcgccgcg
     1801 cgcacggagg ggcgggccga gcaggccgac gcggtggcag ttggcgcggg ggcgcgagtg
     1861 cgtggtgagg gggcgcgatt ccgagcacat gagggcgacg cgggcgtccg acgccagctc
     1921 cattatgcgg tcaatgccgc gcgcaagctc ttcgggcggc gcgaccacct tgccgccgca
     1981 ctcgggcagc cactcgtatc cgatgccgtt ctccttcagg ctctcggcga gcacgcgccc
     2041 gttgaactgc ggccagcgcg accgcgcggc gctgcgaacg tcgcacacca gctcgacctc
     2101 ataccgcctc agcagcgcga ggaagtccgc gaacgcgtgc cgcccgtggc cgatggtgta
     2161 gatggggagc ataagagaaa cagtggggaa gaaccttcgg caccgaatcg tcagggcgtc
     2221 ggcgtcagtc gtcgcggcac ggggcggcta ctgactgctg gctactgact acatctttaa
     2281 ttccatcccg cagcccgtcc gcgctcaggt atgcgaggcg gccgccggtg aacagttcct
     2341 cgcgggtcac gtcggcgaag gcgaagggcg gcggggggaa ggcgtccatc tcctcgtccg
     2401 agtcgaaatc ggtctcggcg aggatgaggc cgtgcaggtc gccgaggaaa acgtccacgg
     2461 agtagagccg cccgtcgcgg cgcaggtagt agcggttctt gcgaatctcg ttggcctcga
     2521 agactgagag cgcctcgtac tcggcgcggt tgaggtacag ggtggtaatc aacgcgcgcg
     2581 agaagtcggg cggggcgggc gcgtgcttct gcgtgagctt gaggctccac tcgccggtcg
     2641 gcacccagcg cgacttgcgc aggcgcagcc gcgtccccgt gatgtagttg tccgttatct
     2701 gagcgtgctc gtcgcgcagc gagacgccct cgggcagagc gcgcaggagg tagcggcgct
     2761 cgcgctccac gcgcacgtac ttcggctcgt ggtcgagtat gtcgcggact cggcccggcc
     2821 cgatgccctt catgcgccga ccagctcccc ctcgggctcg cgcaggaact cttccggcgc
     2881 gacgatgcgg cccgcaatcg cggaggccgc gacgacgtag gggcttgcca ggtaaacctt
     2941 cccggggccg ctgcggccgg ggaagttgcg gttctgcgcg ctcaccgtca cctgttcggg
     3001 gtcgcgcgag gcgcccggcc ccgcgttgat gcatgcgccg caagaggggt caatcagctc
     3061 ggcccctgcg cgctcgaata tctcgatgta gccgcgagag cgcgcgtact cctttatctt
     3121 ctgcgagccg aactggaggt agaggtggac gccgggcgcc accctgcggc cctgctcgac
     3181 ggcgcgcccg agcaccgcgg cgtacatgtc catgtcggcc atcttcccgc cggtgcatga
     3241 gccgccgtag gctatgtcta tcttgacggg ctcgcccaac tcctcgacgg ggatgccgtt
     3301 gcgcgggtcg ccgggcgtgg cgaccatcgg gcggatttcc gagaggtcaa tctcgaagct
     3361 cgcggcatac tcggcgtcgg ggtcgctgcg gaggaagcct ccacggactt cttcggcgtt
     3421 gaggccgcgc gtgcgcgtga ggtattcgag gacgacctcg tccggctcga tgatgccggt
     3481 gaagccgccc gcctctacgg ccatgttcgt cagcgtcgcc cgctcgtcaa tgggccaatc
     3541 cctcagcccc tcgcccgcga actcgagaac ctggccgatg cccttaccct ccttcatgta
     3601 gtcggtcgcg agtatgacga gcatcacgtc tttggccgac acgtcggcgc gcttactgcc
     3661 tttgaggacg aagcggacgg tctcggggac tttgacgcgg atgtctttcg tgtaccaggc
     3721 gttcgccatg tcggtcgagc ccaccccgaa ggcgaagcag ccgagcacgc ccgccatgca
     3781 ggtgtgcgag tcggtgccga tgacgagttg gccggggagc gcgatgtcct cgacgacggc
     3841 gttgtggcag atggcctcgg agccccgctc ctccgtcccg ccgtagagcc ttatgccctg
     3901 ctggtcggtg aagctctcct gcgtcgtagc gagcccgttg gcgcgctcca gcaggcccat
     3961 cttcttcttg tcctcgggca ttacgcggcc gaggaaggtg aggtggtcgc ggaaggcgaa
     4021 gaccgactcg ggctcggtga cgcgcgcgtc gcgccccaaa gcctgcttga agaggctttc
     4081 ggccataggc gtcacgtact cgtgcgagaa gcgcacgtcg gcgacggcga agagcgcgtc
     4141 gccggggcgg actgcctcga cgccgatctg cccggcgcgg acgaaggcgt ggcgcgcgat
     4201 tatcttctcg acgatgttca tcggccgccg cttcgtcccg attgccggcg gctcgactcg
     4261 gcccgcgagc cgggccttgt tgtagctgaa gagcccgccg tgctcgacta tggccttcga
     4321 gagcgggtcg aggccgcgcg tgaactcttc gagcggaatc tcctcgccgc gcctgattcg
     4381 ctctatcagg ccgaagtcgg tcgaggttaa caggccgatg ttctggcagt tctggccgta
     4441 tatcttttcg atggtcttgg cgatgacgag ttcaacgccg gcggccttct cggcgaacgg
     4501 cgccgtctcg cgcgaggagc cgcagccctt cgagagcccc gagacgacga cggagaagcc
     4561 gccccgtttt acttcgtcct tcctgaccgc gccctcgcgc atgccgacat agacgtactc
     4621 gccgagcgtc tcgtcgtagt agaagcagac ccagcccggc gttatctcgt cggtcgagat
     4681 gttgttcata agcggccgct cggggtcgta gcccaaatcc tcgcccgcct ccaactgcct
     4741 gcggacgagc gacacgtcct cggtcagaaa cagcacgcgc ccgccgaacc gcacgcggtc
     4801 gggcctcttc gccgccgccc tttcaccagc cgtcatgttc actccttaag aatgtgcgta
     4861 tgattgccgc gaccgaaacg aaattataaa cgagacgggg cctaacctgc gaccgcccgg
     4921 tggcggccgc gccctcttta cgcttgtgcc gcgcggcgcc gcttgtgtaa tcttcgtcgc
     4981 gcgaagtatg agcgacttaa aagaactcct cgagaacaac cgggcgtggt ctgagggcat
     5041 aaaggcgcac gacccgggct tcttccgtgc gctcgagcga cagcagtcgc cgcgctacct
     5101 ctgggtgggc tgcgccgaca gccgcgtgcc ggccacgcag ctcgtcggcc tcctgccggg
     5161 cgagcttttc gtccaccgca acgtcgccaa cgtcgtcgtg cacaccgact tcaactgcct
     5221 ctccgtcctc cagttcgccg ttgacgtgct caaggtcgag cacgtcatcg tctgcgggca
     5281 ctacggctgc ggcggcgtgc aggcggcgat gaagaactcg cggctggggc tgattgacaa
     5341 ctggctgcgc cacgtgcagg acgtcatgca cgcgcacgag gggcgactgg cagggatcga
     5401 ggacgaggcc gcgcggctcg acaggctctg cgagcttaac gtcgtcgagc aggtcataaa
     5461 cgtcggccgc acgaccatcg tgcaggaggc gtgggggcgc gggcagcggc ttacggttca
     5521 cggctggatt tacggcgtgg gcgacgggct gctgcgcgac ctgggcataa gcgtcacgag
     5581 cacggaagag ctttcggccg cgcgcgagag ggcggtcgga gcctcgggcg gtgtatgagc
     5641 gcggcgggcg cggccgagcc gttcggccta ctcctgatta agggcttcct cggcgagcag
     5701 gagcgccggg agattgtcgc cgagatgcgc gccgcgcgag gcggccccgc caccgtgtac
     5761 gggcgcggcg gctcgggctc tgtggacgag agggtgcgca gtgcttcgcg cctgagtttg
     5821 ccagaagcga cggtcgaggc cttgcggggc aggctctccg ggctcaagcg cgaagtcgaa
     5881 gagcacttcg gtctgagcct cggcgagtgc gaggagccgc agttcctacg ctacggcccc
     5941 ggagacttct tcgtggcgca ccaggacggg aatacgggga tgctccgtct cgaacaggag
     6001 tcgcgcctcg tctccgtcgt catattcctg agccggcggg gcgaaggcca ggacgatggc
     6061 gactacggcg gcggctctct cgtcttccac gaaaggcgcg gcgccgggcg ctttcccctg
     6121 gcgggcgagc ccggcgatct ggtcgccttc cgcgcagaga ctacgcacga ggtcacgccc
     6181 gtcacgagtg gcgagcggct ctcgatagca tgctggtaca ggtgaagaag tttggaaggg
     6241 cgtacccgag cgccgtttgc gagcgaaggg gttttccgtt cgcggaaagt ttaggacttc
     6301 ggacgaagga gaattatccc atgacgatta aaaccagggg gcttttggcc tccctcctgc
     6361 tcgcggccgc gctcgcctcg ggctgcaagc cttcgggcga gacgggctcg aacgccccgg
     6421 gcaactcggc cggcgcggac aacacgacgg cgaagaagac tgcgccgccc acgaagccca
     6481 acgaggacgg cacgatcccc tcggggacgg gcgtcgagaa ggagaagcct tcgcccggca
     6541 aggggaacgt gcagggccgc gtcctgtaca acgagaagcc ggcggccggc atagaggtca
     6601 agctctgctc gaccttcaac cgcttcctag gcggctgcgg cggcgagacg ttcacgacca
     6661 agacggacgc gaacggcgag tacctcatca aggacgttcc gcccaagacc tacgaggggc
     6721 tcgtcgtcaa ggtcttcgac tcggactact acgtcttcgc cacctccggc atagtcagct
     6781 cggccaagta caagatcgag gaggggcaga ccttcttcgc gcccgacacg aacctcttca
     6841 agcaggactt gaagctgctg agcccgaagg ccggctcgaa ggtcgcgggc gatggcatag
     6901 aggtcaagtg gggaccgtac cccgacgccg cctactacaa gctgagcatc tacgccgact
     6961 cgtcgtcggg cgcgcagccc aactacgact acataggcag gcgcgttgac ggcgagtcat
     7021 tctcgctcga caagccgctc acgcccggca cctacactgt caagctcgag gcctacaacg
     7081 gcaacgacgt taagctggcc gaaagctcgg ccgacataaa gttcaccgtg acgggcgacg
     7141 ccgccgcgaa gtaaggggcg cgcggatgac tgagacggcc cgccccgcgc acgagccctc
     7201 ggcagaggcg ctgcgctggg tggagcgtgc ggcggggacg ggcgcgcgcg tgcgctccgc
     7261 ctcgccgctc gcgggcgcga cctcctccct cctctacgcc gtcgaggtcg agcgcggggg
     7321 cgtagcgttc gagcttgtgc tccgccagtt cgcgagcgca gagtggctca aagaagagcc
     7381 cgacctcgcg cgccatgagg ccgaggcgct gcggcgcgcg gcccgcgcgg gcgtccctgc
     7441 gcccgagctt gtcgccttcg acgagacggg cgacgaggcg ggcggccggc cctcgacctt
     7501 gatgacacgg ctgcccggcc gcgtcgtgct tcgccccgac gactccggcg cgtgggcccg
     7561 cggtctcgcc gaggccgccg tctccgtcca cgaagtcccg gccggagact tcccctggga
     7621 gttctaccct tacaccgacc ccgcgcgcgc cgcgccgccc gagtggtctt cggcgcgcgg
     7681 gctctgggag agggcaatcg agaccgcgcg cgggcctcgc cccgctttca tcccgcggtt
     7741 catacaccgc gactaccacc cgaacaacgt gctctggcaa gggggccgtg tgagcggcgt
     7801 cgttgactgg gtcaacgcgt gccgcgggcc gggcggcttc gacgtgacgt ggtgcaggca
     7861 gaacctcgcg ctgctccacg gcgtcgcgga ggccgaccgc ttcctcagcg catacgagcg
     7921 ggcggccggc tccggctcgg agtatcaccc ctactgggac ttgctcgcgc tgacggagtt
     7981 gacggcgggg ccgcccggcg tgtatgaggg gtgggcggcg ttcggggtcg agggcctcac
     8041 ggacgaactg acgagtaggc gcgcggacga gtacctcgcg agcgtactgg cgcgagtttg
     8101 atgattccgg cgtcggaggg gggccgggcc gccttgagct tgacggagag gacgaaggct
     8161 ttcatcaggt cggcgctccc gggcggcgtg aggatttacc gcggcgtgag ggggctgggg
     8221 cgtcgcgcct ggcgcgcccg cccgccgggc atggaggcgg tcttctcgga gatataccgc
     8281 cggaacttgt ggggggacgc agagtccgtc tcaggcaggg gctcgacact cgcgcgcacg
     8341 cgcgtgataa gggaagtgct gccggggctg ttggaagacc tgggcgcccg cacgctcctc
     8401 gacgcgccgt gcggtgactt caactggatg cggcacgtac ggctcgcggg cgtcagctac
     8461 gtcggggccg acgtagtgcc ggagatcgtc gcgcgtaacc ggcgcgagca cggcggcccc
     8521 ggccgcgagt tcgtcgccct cgacataacg agcgacccgc tgccgcgcgc cgacgtcatc
     8581 ctatgccgcg actgcctcat acacctcccc ttccgccagg cgcgctcggc cgtcgagaac
     8641 tttaagagga gcggctcgcg gttcctgctc gcgacgactc acaccctcgt ccgggagaac
     8701 gccgacgccc cgctcggcgg ctggcgctcg ctcaacctcg aactgccccc cttcggcttc
     8761 ccgcgcccgc tccggctcgt cacggaggac gaggaggccg gcaagtgcct gggcctgtgg
     8821 cggctcgaag acctttaagg agccgggcgc gtttcatgac cccgaccgtc ggcttcgtac
     8881 tgctcacgca cgccaggccc gccatgattc ggaggctcgc cgacaggctc gaccgcatgt
     8941 tcggtggccc gcccgtcgtc tgccaccacg acttctcgaa gtgcgacctg cccgtcgaag
     9001 agttcccgcc caacgtgtct ttcgtccgcc cgcacacggt gacgggctgg ggcgagttcg
     9061 cgacgaccga ggccactgtg cgcgccgtcc gccagctcta cgaagggccg ggcggccccg
     9121 actggttcgt gctcctgagc ggcgccgact accccgtcaa gcccgccgcc tctatacttg
     9181 aagacctccg ctcggccgat tgcgacgcct tcatacacca cgagccgata cgggccggcg
     9241 ccttcgagaa cgactggcag gggctctgcc actggcgcta ctgcgcgccc gagcctaacc
     9301 ccttcacgcc ggagttccgc tgcttcgccg gcagccagtg gttcacggcc gggcgtcgcg
     9361 ccgccgagca catcatcgct ttccacgaaa aaaaccccga cacagttgac cgcttccgcg
     9421 gcctcaagct cacggaagag tgctacttcc agtgcgtgct agccaacgag ccgcgccttc
     9481 gtctctgcaa caaaagcctc cgatacacgg actggtctgc gggcggctcg caccctaaga
     9541 ccttaacgac ggaagacctg cccgccttgc tcgccacgcg cgcgcacttc gcgcgcaagt
     9601 tcgacgacga ggtggacgcc cgtgtgctcg acgagctcga cgccgtcgtc ggcccatgaa
     9661 atttccacct gtggaaatcc tgtgaagatt aagtttctga atgcggcgaa aaagctaaaa
     9721 ctgggctgaa aactgcgcga aaaaattttt agaaaaaagt cttgacagcc tctgggggcg
     9781 tgcgtatagt ccgcctcccg tcgcggttct caagggagcc gtgaccggcg aagggatcgg
     9841 cgggcagggg cggcaacgct tcagcccgag ggcaagagcc ggcggtaagg tttctgccat
     9901 tgacgccctc gccgaagccg aaaggcttgc gcaggagaat gccggcaggc gctctccggg
     9961 ccgcgcggat aaaaacgcga cggcgccccg aaggagtgat cgcccgaggg gtagcgacgc
    10021 cgctcaactc cggttgagcc tcgttgtcca gaacgtagac tggaggtgga ggaaaagcca
    10081 ccagaacaaa aaccaaacgg cgccgtccct gcgggggcgg gaattggcga aagtcaattc
    10141 gagccgaccg ggggtttccg gcaaccgcta gccaacgccc cgggatacaa ataggcgact
    10201 tcaagcgtgt acatgcgggg tcgccgttcc ccaggatcgc ttcggtggtt ctagcgggaa
    10261 ttcaggttgc gccgccgctc ctccgggagt cggcggcgca atctttttcc cgttgtgtta
    10321 ccatcgctcc cgcctacgtg taagcccccg gcacttcagc cgacccgaaa aatgctcatc
    10381 gccgcactcg taatcgtcag cctcctcggc ctcggcgcgc tcttgttcgc gctgcggcgg
    10441 ttgaaggccg gggaggcgag gcgcgcccgc gccgaggccg agctggccga agcgctcaag
    10501 cgtctggaag aggagaggcg cgagagggcg ctcgccgacg cggaggcggc ggggaggctt
    10561 gaggccctgc gcgcggaagc ggccgaggcg cgcgccgccc tctcccgcgc cgagagcgcg
    10621 ccgacagata cgaagccgga cgagggcgaa gccgcgggcg cggcggaggt ctcggacgcg
    10681 caggcgctcg cgtggagcat ggacgcgttc ttccagcaga ccacgcaccc gcgccaactc
    10741 ctcgggcacg agacgttcga gcgcggcgtc gaggttctgt gcagcgactc ctaccggccg
    10801 cacgagctgc tcgcgaaggg cttgggcgag agcgtcgtgc tcgcctgcat ggcgttcgag
    10861 gcgatggcgc gccgagccga cgcgcgcggc tcggccgagc ggataatcga aaggctcaac
    10921 gacatctact actggccgcg cttcttcgcc atgcgcgcgc tcgaggctta cgcgcgccgc
    10981 cccgtcgccg ccgaagtgct cgcgcgcgtg aactcaagct ggcaggactc cgtgccttcc
    11041 gaggtgctcg ctgagtttct cgaaaggcgg cgccaggcgg gcgaccccgt caccttcgag
    11101 gcgctcgccc gtcaactcga acgccagcac gtcacgccgt atcaggccgg cgagctgcgc
    11161 gtcatactcg ggcagcttga ccacgtcgtg ccgcgcgagg tcgtggagca gttcgaggca
    11221 tggcaggacg aggcggggct cgccgagtct ctgaagacga tagggcgagt gtgggagcgc
    11281 gagggcgggc cgaagggctc gggcgaagtc ttcgtgctcg actctgttgc cgagcgcgtc
    11341 tcggagatag agtcggccct gaagcgcgac ccggcgcgct cggtgattct ggtcggcgac
    11401 ccgggggtgg gcaagaccgc cgtcgtgcgc gcgctcgcag acaggctcgg gcgcgagcgg
    11461 tgggtcgtct tcgagtcgag cgcggccgaa gtgctcgccg gccagcagta cataggccag
    11521 ctcgaagagc gcgtgcagac gatagtgcgc acggcgggcg ggcgccgcgc gctctggttc
    11581 gtgccgaact ttcaggagac gctctgggcc gggcagcaca agttcagccc cgtcggcgtg
    11641 ctcgacctcc tcatgccttc gatagagagc gggctcctga agatagtggg cgaggtgcct
    11701 tccgccgcct acgagcagtt gatgcggttg cggccgaagc tgcggacggt gatgcagacc
    11761 tgccgcgtgc agccgctcgg cgacgaggag acgttagagc tcggccgccg ctgggcagag
    11821 cttcacggca cgacccggca cgcttgggcc ggcatgcacg agggcgttga cacttcctac
    11881 gtcgcgccgc gcgcctcgcg gcagacgctt cgcgaggctt tgcagcttgc gaagcagtac
    11941 ctcggcgaca aggccgcgcc cggcaacctc atggggctgc tcgacgcgac gcaccgccgc
    12001 ctccttgcag aggacggcga gtcgaaggcg agggagatca cgcccgacga ccttctggtc
    12061 acgctctcgc agatgacggg gctgccgctg caaatcttgg acgagcgcga ggggctagac
    12121 ctcgcgcggc ttcgagcctt cttcgagagc cgcgtgctgg gccagcccga ggcggttgag
    12181 tgcctggtcg agcgcgtcgc tctcgtcaaa gcgggcctga cagacccgac gcgcccgcag
    12241 ggcgtcttcc tcttcgtcgg cccgacgggg acgggcaaga ccgagatagc caagacgctc
    12301 gccgagttcc tcttcggctc gcccgaccgc atgatccgcc tcgacatgag cgagttcatg
    12361 gcgccggagt cgctcgaccg catactcggc gagtcgcacg cgacgagcga cacgcccgcg
    12421 ctcgtcaacc agatacgcaa gcagcccttc tcggtcgtcc tcctcgacga gttcgagaag
    12481 gcgcacccgc aggtctggga cctcttccta caggtcttcg acgacgggcg gctgaccgac
    12541 cggcgcggca acacggccga cttccgacac tccgtcatca tcatgacctc gaacctcggc
    12601 gcgactctgc cggcgggcgc gggcataggg ttctctcagg agcaggcgca gttcgcggcc
    12661 ggcgccgtcg agcgcgccgt ggggcgcgcc ttccgccgc
//
LOCUS       DASPKR010000106         3471 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_658755, whole genome shotgun sequence.
ACCESSION   DASPKR010000106 DASPKR010000000
VERSION     DASPKR010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3471)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3471
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_658755"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VD968_03140"
     CDS             complement(<1..224)
                     /locus_tag="VD968_03140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13419.1"
                     /translation="MPALILLLLLGQDAPVPLPQPPPGPAATTREGERRFLDPKKVPA
                     EGPSSTSFMAPGWKIESFSYGDLNGDAREDV"
     gene            complement(251..1204)
                     /locus_tag="VD968_03145"
     CDS             complement(251..1204)
                     /locus_tag="VD968_03145"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HYE13420.1"
                     /translation="MRFPFELPRGREFDAVGFGLNAVDHLVVVPSYPEFDTKIRLVTH
                     AVSAGGQTATAMVGLRRLGLKTAYAGRFGSDEAGRFGLEAVRAEGVNVEWAEVVEGAR
                     NQIAFILIDARTGERTIIWDRDERLAYREDEAPRGFARRGRVLHMDAHDPPACARLAR
                     EARGAGTVVTIDIDNIYDGLSELLPLVDVLISSKEFPQRLTGVSDERAALVEVKARLR
                     PEAVVGMTLGERGAVVFHGGAFLEAPAFAVPGGCRDTTGAGDAFHTGFLYALLRGEEI
                     EGCLTTACAVAALKCRDLGARTALPTQQELDNFLAAEGETA"
     gene            1323..3467
                     /gene="uvrC"
                     /locus_tag="VD968_03150"
     CDS             1323..3467
                     /gene="uvrC"
                     /locus_tag="VD968_03150"
                     /inference="COORDINATES: protein motif:HMM:NF001824.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HYE13421.1"
                     /translation="MTLEEKLKNLPTSPGVYLHKDEGGKIIYVGKAKNLKNRVRSYFQ
                     SGRGHDRKTRELVRRIRDLEFIVTDNEVEALVLESNLIKQHRPRYNVLLKDDKQYPHL
                     KLTINEPFPRVMITRRIQRDGALYYGPYLPASLARRTIDLINRTFQLRTCDIEIDGKL
                     PRPCLEYHIKRCLGPCVKELCKPDEYAEAVRDVKLFLEGRNKELADDYERRMAAASDE
                     MRFEMAAKYRDLRKTVLAVSEQQKMARAADLDVDIFGFYREGPRLALQLFTMREGKIV
                     GRREFFWEDLPEDDSFEASAFLSEVLTQYYSTDYVPREVHVPADFEDRELLEKALTAR
                     KGRRVRILDPQRGEKRDMIALVEKNAQIAFEQRFRVLKPDMERVLEELQEVLELPRFP
                     SRIESFDVSNISGAENVAAMVVCENGKMNRAEYRRFRIKSIEGANDPGSMREAVFRRY
                     RRQLDEGNPLPDLVMIDGGKAQLAAAASALSELGLEALPAVGVVKPPRRHNEVSHLLV
                     KGREHAPVYLDSHSPVLRLIQMIRDETHRSAVTYHRKRRELRDFTSELTAIPGVGEKR
                     KNRLLRNLGSIQKIALAGVEDLSPFVGRKTAGDIVEHFRRQRALAGVAESEVAASGGE
                     AVVVTTPSGEVAGLHHPEDPTVMTDETIADEHIETRLVDPEGDAEDLQPIRSVDHEGR
                     PRQRRKTTRKPGERSTNPHAVRREKLSGEGGE"
BASE COUNT          609 a         1179 c         1169 g          514 t
ORIGIN      
        1 acgtcctcgc gcgcgtcgcc gttcaagtcg ccgtagctga acgactctat cttccacccc
       61 ggcgccatga aagaggtgct cgaaggcccc tcggccggga ctttcttcgg gtcgaggaag
      121 cgccgctcgc cctcacgggt ggtcgcggcg gggccgggcg ggggctgcgg cagcggcact
      181 ggggcgtcct gccccagtaa gagtaaaagg atgagagccg gcacgtctgt cgtcctccgg
      241 tgaagatgcg tcaggccgtc tcgccttcgg cggcgaggaa gttgtctagc tcctgctgcg
      301 tggggagtgc cgtgcgcgcc ccgaggtcgc ggcacttgag cgcggcgacg gcgcaggccg
      361 tcgtcaggca gccctctatc tcctcgcccc gcaggagcgc gtagaggaag cctgtgtgga
      421 aggcgtcgcc cgcgcccgtc gtgtcgcggc agccgccggg gactgcgaag gcgggcgcct
      481 caagaaaggc tccgccgtgg aagacgacgg cgccgcgctc gccgagcgtc atgccgacga
      541 ccgcctcggg cctgagccgc gccttgacct ccacgagcgc ggcgcgctcg tccgacactc
      601 ctgtgagcct ctgcgggaac tccttcgacg agatgagcac gtcaacgagc ggcagcaact
      661 ccgacagccc gtcgtatatg ttgtctatgt ctatggtgac gacggtgccg gcgccgcgcg
      721 cctcgcgcgc cagcctggcg cacgcgggcg ggtcgtgggc gtccatgtgg agcactcggc
      781 cccggcgcgc gaagccgcga ggcgcctcgt cttcgcggta ggcgaggcgc tcgtccctgt
      841 cccatatgat cgtgcgctcg cccgtgcgcg cgtctatgag gatgaatgct atctggttgc
      901 gggcgccctc cacgacttcc gcccattcga cgttgacgcc ctcggccctg acggcttcga
      961 gcccgaagcg gcccgcctcg tcagagccga agcggcccgc gtaggccgtc ttcaagccca
     1021 gcctccgcag gccgaccatc gccgtcgccg tctgcccgcc cgcgctcacc gcgtgcgtga
     1081 cgagccggat tttcgtgtcg aactcggggt acgaggggac gaccacgagg tggtcaacgg
     1141 cgttcaggcc gaagccgacg gcgtcgaact ctctcccgcg gggaagctcg aaggggaatc
     1201 gcacgcgcgc attatacccg cgagacgggc gtcgcgccgc caatttcgcg gccgcgcgcg
     1261 cgatgcgcta aactgtcggg cggggcgaga acactgatga cggcgagggg ctagaggcgg
     1321 ctttgacgct cgaagagaag ctgaagaacc ttcccacgtc gcccggcgtc tatctgcaca
     1381 aggacgaggg cgggaagata atctacgtcg ggaaggcgaa gaaccttaag aaccgcgtgc
     1441 gctcctactt ccagtcgggg cgcggccacg accgcaagac gcgcgagctg gtgcgccgca
     1501 tacgcgacct agagttcatc gtcacggaca acgaagtcga ggcgctcgtc ttagagtcga
     1561 acctgatcaa gcagcaccgg ccgcgctaca acgtgctctt gaaggacgac aagcagtacc
     1621 cccacctcaa gctcaccata aacgagccgt tcccgcgcgt gatgataacg cgccgcatac
     1681 agcgcgacgg cgctctctac tacgggccgt acctgcccgc gtcgctcgca cggcgaacca
     1741 tagacctcat caaccgcacc ttccagctcc gcacctgcga cattgagatt gacggcaagc
     1801 tcccgcgccc gtgcctcgaa taccacatca agcgctgcct ggggccctgc gtgaaggagt
     1861 tgtgcaagcc ggacgagtac gccgaggccg tgcgcgacgt gaagctcttc ctcgaagggc
     1921 gcaacaagga gctcgcggac gactacgagc ggaggatggc ggccgcctcc gacgagatgc
     1981 gcttcgagat ggcggcgaag taccgcgacc ttcgcaagac cgtgctcgcc gtctccgagc
     2041 agcagaagat ggcgcgcgcc gccgacctcg acgttgacat attcggcttc taccgcgagg
     2101 ggccgcgcct cgccttgcag ctcttcacca tgcgcgaggg gaagatagtc ggccggcgcg
     2161 agttcttctg ggaggacttg cccgaggacg actcgttcga ggcgtcggcg tttttgagcg
     2221 aggtgctcac acagtactac tcgaccgact acgtgccgcg cgaggttcac gtccccgcgg
     2281 acttcgaaga ccgcgagctt ctggagaagg cgctgacggc gcgaaagggc cgccgggtgc
     2341 ggatactcga ccctcagcgc ggcgagaagc gcgacatgat agcgctcgtc gagaagaacg
     2401 cgcagatagc cttcgagcag cgcttccgcg tcttgaagcc cgacatggag cgcgtgctcg
     2461 aagagcttca ggaggttctg gaactcccgc gcttcccctc gcgcatagag tcgttcgacg
     2521 tgtcgaacat ctcgggggcg gagaacgtgg cggcgatggt cgtctgcgag aacggcaaga
     2581 tgaaccgcgc cgagtaccgc cgcttccgca tcaagtcaat cgagggcgcg aacgaccccg
     2641 gctcgatgcg cgaggccgtc ttccgccgct accgcaggca gctcgacgaa ggcaaccctc
     2701 tgcccgacct cgtgatgatt gacggcggga aggcgcagct cgcggccgcc gcgtcggcct
     2761 tgagcgagct ggggctggaa gcgctgccgg ccgtcggcgt cgtcaaaccc ccgcggcgcc
     2821 acaacgaggt ctcgcacctg ctggtgaagg ggcgcgagca cgcgcccgtc tatctcgact
     2881 cccactcgcc cgtgctgcgg ctcatacaga tgatacgcga cgagacgcac cgctcggccg
     2941 tcacctacca ccggaagcgg cgcgagcttc gagacttcac ctcggagctc acggccattc
     3001 cgggcgtcgg cgagaagcgc aagaaccggc tgctcaggaa cctcggctcg attcagaaga
     3061 tagcgctcgc gggcgtggaa gacctctcgc ccttcgtcgg cagaaagacg gccggtgaca
     3121 tcgtcgagca cttccgtcgg cagcgcgcgc tcgcgggcgt cgccgagagt gaagtcgcgg
     3181 cgtcgggcgg cgaggcggtg gtcgtgacca cgccttcggg cgaggtggcg gggctgcacc
     3241 acccggaaga cccgaccgtg atgacagacg agacgattgc cgacgagcac atcgagacgc
     3301 ggctcgttga ccccgagggc gacgccgaag acttgcagcc catacgctcc gttgaccacg
     3361 aaggccgccc gcgccagcgc cgcaagacca cccgcaagcc cggcgagcgc tccaccaacc
     3421 cgcacgccgt ccgccgcgag aagctctccg gcgagggcgg ggaatgaggg c
//
LOCUS       DASPKR010000107         3829 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1435972, whole genome shotgun sequence.
ACCESSION   DASPKR010000107 DASPKR010000000
VERSION     DASPKR010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3829)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3829
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1435972"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..348
                     /locus_tag="VD968_03155"
     CDS             <1..348
                     /locus_tag="VD968_03155"
                     /inference="COORDINATES: protein motif:HMM:NF014453.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HYE13422.1"
                     /translation="NSLGSLIPSSLYGRAKRGLDLLLALLLLPVALPLLVVAAVAIKR
                     DSPGPVFFTQLRVGYRGEIFRIWKLRTMRPGGEGRHYTEGEDPRITRAGRLLRKYRID
                     ELPQILNILRGSR"
     gene            345..1871
                     /locus_tag="VD968_03160"
     CDS             345..1871
                     /locus_tag="VD968_03160"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE13423.1"
                     /translation="MKATLKNFRSALAAAAALLALSLFSAGAGAQDQSAGQPAPQETP
                     PPPAAPRPVSVPRPADQTLKNGLRVIVVEDRDMPLVTTQLLVKNGGEVDPPQLSGLAD
                     MTASLLTKGTKTRTAPQIAQEIEALGGVINTGAGWDASRATVNVLSSKIEPAMAVLAD
                     VVRNPVFSAEEIERLRQQYIDDRNVAMNDPGTLASFVASRVVFGDSPYGHPIAGTLES
                     LPRITREHVVELHSRYYRPDNAVLVIGGDIAAADAFKLAERLFGDWAKPSSPLPSPQT
                     SAATAGGAKKQRVVVVDMPGAGQAAVVLARRGIRRTDPDFFRGIVTNAVLSGYSGRLN
                     QEIRIKRGLSYGARSSLDVRRDVGPFVASSQTKNPSGAEVAGLLLGELARLSESLVSE
                     AELTPRKAVLIGGFGRSLETTEGLVAQIASLALYGLGLDEINRYIAGVQAVTPADIQK
                     FAGGRLPAAEADIIIVGEAKEFVEPLRKQFGSVEVIPAPELDLNSAALRKPAGGATRR
                     "
     gene            1875..2519
                     /locus_tag="VD968_03165"
     CDS             1875..2519
                     /locus_tag="VD968_03165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13424.1"
                     /translation="MRATRAAFRAALTAALMACAFSICASAQDDGGGGAFITAKSDSS
                     AVARALSHRNPTARRDAAEGLARAAAVEHRRLVEGYRAQERDARVKLALDWALYRMGR
                     GESLFALVGALDEKKLAEQSVAYLKQLDSPDPLYVFLGRVNGNTLIRVLEVLASVGDA
                     ATLERLKPFTESLDPLIADAARFAEREINIRLEETPVPEPKRERKVGQAEKTEP"
     gene            2570..>3829
                     /locus_tag="VD968_03170"
     CDS             2570..>3829
                     /locus_tag="VD968_03170"
                     /inference="COORDINATES: protein motif:HMM:TIGR00148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HYE13425.1"
                     /translation="MHRNLRSFLELLRRENDLVSVGAEVDPHLELAEVHRRVIARGGP
                     ALLFEKVKGSRYPVVTNLFGTERRIELAFGPKPEALVRRAVHLAESLMPPRPSALWRE
                     RSLALEALRLGTRRVRRAPVTEVVDRPARLDELPVLTTWQEDGGPFFTLPLVYTEHPE
                     TGKHNLGMYRMQRHDARTTGMHWQIHKGGGFHYHEAEARGDALPVTVFLGGPPALILS
                     AIAPLPEDVPELVLASVLAGEKIRVADNPLEGFTHRLVAEAEFALVGRVPPRERRAEG
                     PFGDHYGYYSLQHDYPVFNVEAVFHRKDAIYPATVVGKPRQEDFFIGDYLQKLLSPLF
                     PLVMPSVRDLWTYGETGFHSLAAAVVRERYGREALVSAFRILGEGQLSLTKFLLLTDA
                     PQDLRDFPRLFEHVLARFRPETDLFVFS"
BASE COUNT          606 a         1383 c         1238 g          602 t
ORIGIN      
        1 aacagtctgg gctcgctcat tccgtcgtcg ctctatggcc gggcgaagcg gggattggac
       61 ctgctgcttg ctctgctgtt gcttccggtg gccctgccgt tgctggttgt ggctgcggtc
      121 gcgatcaagc gggacagccc ggggccggtt ttcttcacgc agttgcgggt cggctatcgc
      181 ggcgagatct tccggatctg gaagctgcgg acgatgcggc cgggcgggga gggcaggcat
      241 tacaccgaag gcgaggatcc gcggatcacg cgggccgggc ggctcttgcg caagtaccgg
      301 atcgacgagc tgccgcagat cctgaacatc ttgcggggga gccgatgaaa gcaacgctga
      361 aaaacttccg ctcggcgctc gcggccgcgg ccgcgcttct cgcgctctcg ctcttctcgg
      421 ccggggccgg cgcgcaggat caaagcgcgg gccagcccgc gccgcaggag actccgcccc
      481 ccccggccgc gccgcgcccc gtgagcgtcc cgcgcccagc cgaccagacg ttgaagaacg
      541 ggctgcgcgt catcgtcgtg gaagaccggg acatgccgct cgtcaccacg cagctactcg
      601 tcaagaacgg cggcgaggtt gacccgccgc agttgagcgg cctcgcggac atgacggcct
      661 cgcttctgac gaaggggacg aagacgcgca cggcgccgca gatagcgcag gagatcgagg
      721 cgctcggcgg cgtcataaac acgggcgcgg gctgggacgc ctcgcgcgcc accgtcaacg
      781 tgctctcgtc gaagatagag cctgcgatgg ccgtcctcgc cgacgttgtg cgcaaccccg
      841 tcttctccgc cgaggagatc gagcggctcc gccagcagta catagacgac cgcaacgtgg
      901 cgatgaacga ccccgggacg ctcgcctcct tcgtcgcctc gcgcgtcgtc ttcggcgact
      961 cgccctacgg ccacccgata gccggcacgc tcgaatcgct cccgcgcatc acgcgtgagc
     1021 acgtggtcga gcttcactcc cgctactacc gccccgacaa cgccgtcctc gtcatcggcg
     1081 gcgacatcgc cgcggccgac gccttcaagc ttgccgagcg gctgttcggt gactgggcga
     1141 agccttcctc gcctctgccg agcccgcaga cctccgccgc aactgcgggc ggggcgaaga
     1201 agcagcgggt cgtcgtcgtt gacatgccgg gcgcgggcca ggccgcggtc gtgctcgcgc
     1261 gccggggcat acgccggaca gacccggact tcttccgcgg catagtcacg aacgccgtgc
     1321 tctccggcta ctccggccgc ctcaaccagg agattcgcat caagcggggc ctaagctacg
     1381 gcgcgcgaag ctctctggac gtgcggcgcg acgtggggcc gttcgtcgcg tcgtcgcaga
     1441 cgaaaaaccc gtcgggcgcg gaggtggcgg gcctcctcct cggcgagctc gcgcggctct
     1501 cggaatctct tgtgagcgag gccgagctta cgccgcgcaa ggccgtgctc atcggcggct
     1561 tcggccgctc tctggagacg accgaggggc tcgtcgccca gatcgcatcg ctcgcgctct
     1621 acgggcttgg cctggacgag ataaaccgct acatcgcggg cgtgcaggcc gtcacgccgg
     1681 ccgacataca gaaattcgcg ggcgggcggc tcccggcggc cgaggccgac atcatcatcg
     1741 tcggcgaggc gaaggagttc gtcgagcccc tgcgcaagca gttcggtagc gtcgaagtca
     1801 tccccgcccc ggagcttgac cttaacagcg ccgcgcttcg caagccggcg ggcggcgcga
     1861 cgaggaggta aatgatgaga gcaacgcgag ccgccttccg cgcggccctg accgccgcac
     1921 tcatggcctg cgccttctca atctgcgcct cggcgcagga tgacgggggc ggcggcgcct
     1981 tcatcacagc gaagagcgac tcttcggcag tcgcccgcgc actctcgcac cgcaacccga
     2041 cggccaggcg cgacgcggcg gaagggctcg cgcgcgccgc tgctgtggag cacaggcgtc
     2101 tggtcgaggg ctacagggcg caggagcgcg acgcgcgcgt caagctcgcg ctcgactggg
     2161 cgctctaccg catggggcgc ggcgagagcc tgttcgcgct cgtcggcgcc ctcgacgaaa
     2221 agaagctggc cgagcagtcg gtcgcctacc tcaagcagct cgatagcccc gaccctctct
     2281 acgtcttcct cgggcgcgtg aacggcaaca ctctcatccg cgtcctcgaa gtcctcgcct
     2341 cggtcggcga cgcggcaacg ctcgaacgct tgaagccctt caccgagtcg ctagacccgc
     2401 tcatcgccga cgccgcacgc ttcgccgagc gcgagataaa catccgcctc gaagagactc
     2461 ccgtccccga gccgaagcgc gagcgcaaag tcggtcaggc ggagaagacg gagccttaaa
     2521 actttcacgc tttgacaagc tggctggttg tgatttactc gtcggcgaga tgcaccgcaa
     2581 cctccgctcg ttcctcgaac tgctacggcg cgagaatgac cttgtaagcg tcggggcgga
     2641 agttgacccc catcttgagc tggcggaagt ccaccgccgc gtcatcgccc gaggcggccc
     2701 cgcgctcctc ttcgagaaag ttaagggcag ccgctacccc gtcgtcacga acctcttcgg
     2761 cacggagcgc cgcatcgagc tagccttcgg ccccaagccc gaggcgctgg tccgccgcgc
     2821 ggttcatctg gccgagtcgc tcatgccgcc gcgcccctcg gcgctctggc gcgagcgctc
     2881 gctcgcgctc gaagccctgc ggctcggcac gcgccgcgtg cgccgcgcgc ccgtcacgga
     2941 agtggttgac aggccggccc ggctcgacga actgccggtg ctcacgacct ggcaggagga
     3001 cggcggcccc ttcttcaccc tcccgctcgt ctataccgag caccccgaga cgggcaagca
     3061 caacctcggc atgtaccgaa tgcagcgcca cgacgcgcgc actaccggca tgcactggca
     3121 gatacacaag ggcggcggct tccactacca cgaggccgaa gcgcgaggag acgcgctccc
     3181 ggtcacggtc ttcttaggcg gcccgcccgc gctcatcctc tctgccatcg cgccgcttcc
     3241 cgaagacgtc cccgagcttg tgctcgcttc cgtcctcgcg ggcgagaaga ttcgcgtggc
     3301 tgacaatccg ctcgaaggct tcacgcacag gctcgtggcc gaggccgagt tcgcgctcgt
     3361 cgggcgagtc ccgccccgag agcgccgcgc ggaaggcccc ttcggcgacc actacggcta
     3421 ttactcactc caacacgact acccggtctt caacgtcgag gccgtcttcc acaggaagga
     3481 cgccatctac ccggccaccg tggtcggcaa gccccggcag gaagacttct tcataggcga
     3541 ttacctgcaa aaactcctct cgccgctctt cccgctggtg atgccgagcg tgcgcgacct
     3601 ttggacatac ggcgagacgg gcttccactc gctcgccgcc gccgttgtgc gcgagcgcta
     3661 cgggcgcgag gcgcttgtct ccgccttccg catactcggc gaggggcagc tctcgctcac
     3721 aaagtttctg ctgctcacgg acgcgccgca ggacttgcgc gactttccgc gcctcttcga
     3781 gcatgtcctc gcgcgcttcc gccccgagac agacctcttc gtcttctcg
//
LOCUS       DASPKR010000108         4004 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1176936, whole genome shotgun sequence.
ACCESSION   DASPKR010000108 DASPKR010000000
VERSION     DASPKR010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4004)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4004
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1176936"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VD968_03175"
     CDS             complement(<1..245)
                     /locus_tag="VD968_03175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13426.1"
                     /translation="MRLPARLCAVAALACLAYFAAGSISTAQVQPVTAGQVIISELRY
                     RGPNGIRDEFVEIYNNTNSPITVQAIDASAGWGLAAS"
     gene            478..1983
                     /gene="ffh"
                     /locus_tag="VD968_03180"
     CDS             478..1983
                     /gene="ffh"
                     /locus_tag="VD968_03180"
                     /inference="COORDINATES: protein motif:HMM:TIGR00959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HYE13427.1"
                     /translation="MFESLSDKLKRALKNLRGEGVLTPEHVDAALREIRMALLEADVN
                     YKVAKDFIASVKEKAEGQQVWQELKPSEQVVKIVFDELVELLGGTSSRLVFTKASPNV
                     VMIVGLQGSGKTTSTGKIAMWLAKNQQRKPLLVSTDVNRPAAREQLKVIAKATGQAIF
                     EKPESNDPVELAREAYRHAQQTGYDTLLIDTAGRLHIDDELMEELVRIKADTRPVEIL
                     FVADAMTGQDAVRSGEEFHRRVGITGVVLTKMDGDARGGAALSIKQVTGQPVKFVGVG
                     EKYDALEPFYPDRIAQRILGMGDVLSLIEEVQQKVDQQEAESQLQKLQKNQFTLDDFR
                     SQLRQVKKLGSFSKIMKLLPDQLLGGIGMPQLDEEQSAEMEAQLKRTEAIIDSMTREE
                     RGDHKLLNASRRRRIARGSGTSVAEVNQLVKQYVEMRQMMQQLSRSGMFGGGGGFKNR
                     MARRVAGMMGMPDVSGMMGEGGGNGDAGLPPGPPAAGAGRRKKKPRHKKRK"
     gene            2006..2278
                     /gene="rpsP"
                     /locus_tag="VD968_03185"
     CDS             2006..2278
                     /gene="rpsP"
                     /locus_tag="VD968_03185"
                     /inference="COORDINATES: protein motif:HMM:TIGR00002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HYE13428.1"
                     /translation="MLAIRLMRMGAKKSPSYRIVVKEKLSKRDGAYVENVGFYNPTRE
                     PLELRLDMERVNYWIGKGAQPTDTVRQLIRRASKAEAAAAGEQPSA"
     gene            2293..2529
                     /locus_tag="VD968_03190"
     CDS             2293..2529
                     /locus_tag="VD968_03190"
                     /inference="COORDINATES: protein motif:HMM:NF024483.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HYE13429.1"
                     /translation="MLRDAVELIVKNLVREAEAVDVREVERDRSTTVIEVRVAQADVG
                     KVIGRQGRTVKALRSLLYAAGQKHNRRFVLEIVE"
     gene            2526..3068
                     /gene="rimM"
                     /locus_tag="VD968_03195"
     CDS             2526..3068
                     /gene="rimM"
                     /locus_tag="VD968_03195"
                     /inference="COORDINATES: protein motif:HMM:TIGR02273.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HYE13430.1"
                     /translation="MSAPGEGDAGELVAVAKVMKVRGVRGEVVGELLTDFPERFKRVS
                     ELTAVGPGGARQRLRLERHWHHGARVVFKFEGFDTPEESAALVGAELAVPESEAVELG
                     EGEFFDWQLVGCRVETVGGEPLGTVREVMHLGGDAPVFVIKDDARGKEHLVPFAESIC
                     VEVDIRNKLIRVDPPDGLIE"
     gene            3131..3853
                     /gene="trmD"
                     /locus_tag="VD968_03200"
     CDS             3131..3853
                     /gene="trmD"
                     /locus_tag="VD968_03200"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: protein motif:HMM:TIGR00088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HYE13431.1"
                     /translation="MRFDIITIFPDFFGAVFDFGIVRRARAAGLVEIEAHDLRRWAHD
                     RHRVVDDRPFGGGDGMVLKPEPIFEAVEALAGSADARELREAGRRVVLLSPQGQVLTQ
                     ALAGELAEAAQVVLICGRYEGVDERVAEALATDEVSIGDYVLSGGEPAAVVLVDAVVR
                     LLPGALGSETSAVNESFSEGLLDFPNYTRPPEFRGMRVPEVLLSGHHAEVERWRRQAA
                     LEKTRRNRPDLLERAGGAVENI"
BASE COUNT          742 a         1217 c         1414 g          631 t
ORIGIN      
        1 tccgacgccg ccaggcccca cccggcggac gcgtcaatcg cctggacagt tatgggcgaa
       61 ttcgtgttgt tgtaaatctc gacgaactcg tcgcggatgc cgttcgggcc tcggtagcgc
      121 agctcactta tgatgacttg gccggccgtg acgggctgta cctgggctgt ggaaatgctg
      181 ccggcggcga agtaggccag gcaggcaagg gcggcgacgg cgcacaggcg cgcgggcaga
      241 cgcatagaac ctccttagac gagaaacggg ttgaaactgc cgggggcggc aggggcttaa
      301 acttacagtt tgccgttgat tgcgaaaaat acttcgggcg catattacca ccaaactttt
      361 tggccgagaa cccctttatt ctccccgcgc cgcctatccc cctttccttg acaccactta
      421 ccggcgcctt tatcatcctt gttttcggcg ggggccggaa ggcgcgtctg taagggtatg
      481 ttcgagtctt tatccgacaa gctgaagcgt gcgctcaaga acctgcgcgg cgagggcgtg
      541 ctcacgcccg agcacgtgga cgccgccctg cgcgaaatcc gcatggcgct ccttgaggcc
      601 gacgttaact acaaggtcgc caaggacttc atcgcgtcgg tcaaggagaa ggccgagggg
      661 cagcaggtct ggcaggagct gaagccgtcg gagcaggtcg tcaagatagt cttcgacgag
      721 ctggtcgagc ttctgggcgg cacgagctcg cggctcgtgt tcacgaaggc gagcccgaac
      781 gtcgtgatga tcgtcggcct gcaagggtcg ggtaagacga cctcgacggg caagatagcc
      841 atgtggcttg ccaagaacca gcagcgcaag cccctgctgg tctcgacgga cgtgaaccgc
      901 ccggcggcgc gcgagcagct aaaggtaata gctaaggcga cggggcaggc gatattcgag
      961 aagcccgagt cgaacgaccc ggtggagctg gcgcgcgagg cttaccgcca cgcgcagcag
     1021 accggctacg acacgctcct gatagacacg gccggccgcc tccacattga cgacgagctg
     1081 atggaagagc tcgtcaggat aaaggccgac acgcgccccg tcgagattct cttcgtcgcc
     1141 gacgcgatga cgggacagga cgccgtccgc tccggcgagg agttccaccg ccgcgtcggc
     1201 atcacgggcg tggtgctcac gaagatggac ggcgacgcgc gcggcggcgc cgcactctcc
     1261 atcaagcagg tgacggggca gcccgtgaag ttcgtcggcg tcggcgagaa gtacgacgcg
     1321 ctcgagccct tctacccgga ccgcatcgcg cagcgcatac tcggcatggg cgacgtgctc
     1381 tcgctcatcg aggaggtgca gcagaaggtt gaccagcagg aggccgagag ccagctacag
     1441 aagctacaga agaaccagtt cacactggac gacttccgca gccagctccg ccaggtcaag
     1501 aagctcggct cgttctcgaa gataatgaag cttctgcccg accagctctt gggcgggata
     1561 gggatgccgc agttggacga agagcagtcg gccgagatgg aggcgcagct caagcgcacc
     1621 gaggccatca ttgactcgat gacgcgcgag gagcgcggcg accacaagct cttgaacgcg
     1681 agccgccgcc gccgcatcgc gcgcgggtcg gggacgagcg tggcggaggt caaccagctc
     1741 gtcaagcagt acgtcgagat gcggcagatg atgcagcagc tctcgcgctc cggcatgttc
     1801 gggggcggcg ggggattcaa gaaccgcatg gcccgccgcg tggccggcat gatgggcatg
     1861 cccgacgtga gcggcatgat gggcgagggc ggcggcaacg gagacgccgg cctgcccccc
     1921 ggccctcccg ctgccggcgc cggccgcagg aagaagaagc cgcggcacaa gaagaggaag
     1981 taagcagtca gctttcggag gaagaatgtt agcaatcaga ctcatgcgaa tgggcgcgaa
     2041 gaagagccct tcgtaccgca tcgtcgtcaa ggagaagctg tcgaagcgcg acggcgccta
     2101 cgtcgagaac gtcggcttct acaacccgac gcgcgagcct ttggagcttc ggctcgacat
     2161 ggagcgcgtc aactactgga tagggaaggg cgcgcagccg accgacaccg tccgccagct
     2221 catacgccgc gcctcgaagg ccgaggccgc cgcggccggc gagcagcctt cggcctgaag
     2281 ccccgacgac tgatgcttag agacgccgtc gagttgatcg tcaaaaacct cgtgcgcgag
     2341 gccgaggccg ttgacgtgcg cgaggtggag cgcgaccgct cgaccaccgt catcgaggtg
     2401 cgcgtcgcgc aggcggacgt gggcaaggtc ataggcaggc aggggcgcac cgtgaaggcc
     2461 ctgcgctcgc tgctctacgc ggcggggcag aagcacaacc gccgcttcgt gctggaaatc
     2521 gtcgaatgag cgcgccgggc gagggcgacg ctggtgagct ggtcgccgtc gcgaaggtca
     2581 tgaaggtgcg gggcgtgcgc ggcgaggtcg tgggcgagct tttgacggac ttccccgagc
     2641 gcttcaagcg cgtctcggag ctgacggccg tcggccccgg cggcgcgcgg cagcggctcc
     2701 ggcttgagcg ccactggcac cacggcgccc gcgtcgtctt caagttcgag ggcttcgaca
     2761 cgccggaaga gtcggccgcg ctcgtggggg cggagctggc cgtccccgaa tcggaggcgg
     2821 tcgagctggg cgagggagag ttctttgact ggcagctcgt cggctgccgc gtggagaccg
     2881 tcggcggcga gccgctcggc accgtccgcg aggtgatgca cctcggcggc gacgcgcccg
     2941 tcttcgtcat taaagacgac gcgcgcggca aagagcacct ggtgccgttc gcagagagca
     3001 tctgcgtcga ggtggacata cggaacaagc tcatacgggt tgacccgccc gatgggttga
     3061 tagagtagat gtcggatgct agatgctagg cgtcacttaa agccggccac taacatccag
     3121 cacccgcttt atgcgctttg acattatcac gatcttcccc gacttcttcg gcgcggtctt
     3181 cgacttcggc atcgtgcgga gggcgcgggc agcggggctc gtcgagatag aggcgcacga
     3241 cctgcgccgg tgggcgcacg accggcaccg cgtggttgac gacaggccgt tcggcggcgg
     3301 cgacgggatg gtcttaaagc ccgagcccat cttcgaggcg gtcgaggctc tggcgggctc
     3361 ggccgacgcg cgggagttga gggaggcggg ccgccgcgtc gtgctgctgt cgccgcaggg
     3421 gcaggttttg acgcaggcac tcgcggggga gctggccgag gcggcgcagg tcgtcctgat
     3481 ctgcggccgc tacgagggcg ttgacgagcg cgtggcggag gcgctggcga ccgacgaggt
     3541 ttccataggc gactacgtgc tctcgggcgg cgagccggcg gccgtcgtac tcgtggatgc
     3601 cgtagtcagg cttttgccgg gcgcactggg gagcgagact tcagccgtca acgagtcgtt
     3661 ctccgaaggg ctgctcgact tcccgaacta cacgcgcccg cccgagttcc gcggcatgcg
     3721 cgtccccgaa gtgctcctga gcggccacca cgccgaggtc gagcgctggc ggcggcaggc
     3781 cgcgttggag aagacgcggc gcaaccgccc tgatttgtta gagagagcgg gcggcgccgt
     3841 agagaatatt tagttatcag ttaagtcgtt cggacgacag tttttcgagg tgaattatga
     3901 accgcttgga catgatagag aaggcgcagt tgcgcacgga catcccggac ttcgcgcccg
     3961 gcgacaccgt ccgcgtgcag gtgcgcatca aggagtcgga gact
//
LOCUS       DASPKR010000109         2295 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1177315, whole genome shotgun sequence.
ACCESSION   DASPKR010000109 DASPKR010000000
VERSION     DASPKR010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2295)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1177315"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..>2295
                     /locus_tag="VD968_03205"
     CDS             44..>2295
                     /locus_tag="VD968_03205"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE13432.1"
                     /translation="MVGRTLLNYRITEKLGAGGQGTVYKATDERLGRTVVIKVLAPEL
                     TAREVNLKRFEREAQLASSLDHPNICTIYGLHEIDGLHFIAMQYIEGKNVRQLVGGRP
                     LALDSALSIAYQVTDALAAAHAKGIIHRDIKAGNVMVTDRGLVKVLDFGLAKLLEDEK
                     KKGGDVHLTELGVPYGTATYAAPEQATGQKVDHRADIFSTGVLLYEVLAGTWPFRGQT
                     TVEVRYAVLHDTPEPVSEVRKDNPPESLQRILDRSLAKRPEERYQRIAEMRDDLRAVI
                     REVAGASGAEASLSPAGDVLPVTAPPRHHGPEGGGFGRAFRRWWRSLTGGEAQPTSMP
                     PPSRSASAQSRGAHTSAHSSAPGSPHVSQFETQKSIAILPFRNLANDPEASFYEFSLA
                     DAVTTELARVRQLIVRPSSLIVKYQGREVDPRDAGHELGVSAVLSASFLRAGGSLRVN
                     AQLIDVETGDMLWSDRIDATASDIIALQDTIAQRIAKGLNVEQRGAAAGEQQKPATQS
                     TAAYEQYLRGRDFFAKFLFHTLDTADCDKAVEHFQHAIRLDPTFALAHSALGACYANR
                     VLKGLGDVEDYELAESAFSRALELDPELVEARMLMVFIYLSRGEKAKARAEVARLTKQ
                     APNEAAVYFVKGALNRLDGEYDRALRAFERLARLDPAARVVASYNRARVFMYQHRLDD
                     ALLELEQGARIEPDHPLVRTFRAVVLGRRGDVAEAVKILSDVLEEHPQMHGIRPLLAQ
                     QLIKQGDTEAA"
BASE COUNT          395 a          858 c          728 g          314 t
ORIGIN      
        1 cttccggtcg cgaatcaaaa actaaaatcg caaatcaaaa tttgtggttg gcaggacgct
       61 cctcaactac cgcatcacgg agaagctcgg cgcgggcggg cagggcacgg tctataaggc
      121 gacggacgag cgcctcggcc gcaccgtcgt catcaaggtg ctcgcgccgg agcttacggc
      181 ccgcgaggtc aacctcaagc gcttcgagcg cgaggcgcag ctcgcctcct ccttagacca
      241 cccgaacatc tgcaccatct acggcctgca cgaaattgac ggcctgcact tcatcgcgat
      301 gcagtacatc gaggggaaga acgtccgcca gctcgtgggc ggccgccccc tcgctttgga
      361 cagcgcgctc tccatcgcct accaggtgac cgacgccctc gccgccgcgc acgcgaaggg
      421 catcatccac cgcgacataa aggccggcaa cgtcatggtc acagaccgcg gcctcgtcaa
      481 ggtgctagac ttcggcctag ccaagctcct cgaagacgag aagaagaagg gcggcgacgt
      541 tcacctgact gagctgggcg tcccctacgg cacggccacc tacgccgcgc ccgagcaggc
      601 cacgggccag aaggttgacc accgcgcgga catcttctcg acgggcgtgc tgctctacga
      661 ggtgctcgca ggcacctggc cgttccgcgg gcagacgacc gtggaggttc gctacgcagt
      721 cctgcacgac acgcccgagc ccgtctcgga ggtgcgcaag gacaacccgc cggagtcgct
      781 acagcgcata ctcgaccgct cgctcgccaa gcgccccgaa gagcgctacc agcgcatcgc
      841 ggagatgcgc gacgacctgc gcgccgtcat ccgcgaggta gcgggcgcgt cgggcgcgga
      901 ggcgagctta agcccggcgg gcgacgtgct gcccgtgacg gcgccgcccc ggcaccacgg
      961 ccccgagggc ggcggcttcg gccgcgcctt ccggcgttgg tggcgtagcc ttacgggcgg
     1021 cgaggcgcag ccgacttcga tgccgccgcc ctcgcgctcg gcctccgcgc agtcgcgcgg
     1081 ggcgcacacc tcggcccact cctccgcccc cggctcgccg cacgtcagcc agttcgagac
     1141 gcagaagtcc attgccatcc tccccttccg caacctcgcc aacgaccccg aagctagctt
     1201 ctacgagttc tcgctggccg acgccgtgac cacggagctc gcgcgcgtgc ggcagctaat
     1261 cgtgcgcccc tcgtcgctca tagttaagta ccagggccgc gaggttgacc cgcgcgacgc
     1321 cggccacgag ctcggcgtga gcgccgtgct gtcggcgagc ttcctgcgcg cgggcggcag
     1381 cctccgcgtc aacgcgcagc tcatagacgt cgagaccggc gacatgctct ggagcgaccg
     1441 cattgacgcc accgcctcag acatcatcgc cctacaggac accatcgcgc agcgcatcgc
     1501 gaagggcctg aacgtcgagc agcgcggcgc ggccgcgggc gagcagcaga agcccgccac
     1561 gcagagcacg gccgcctacg agcagtacct gcgcgggcgc gacttcttcg ccaagttcct
     1621 cttccacacg ctcgacacgg ccgactgcga caaggccgtc gagcacttcc agcacgccat
     1681 ccgcctcgac ccgacgttcg cgctcgcgca cagcgcgctc ggcgcctgct acgccaaccg
     1741 cgtgctgaag ggcctcggtg acgttgagga ctacgagctc gcggagagcg ccttcagccg
     1801 cgcgcttgag ttagaccccg agctggtcga ggcccgtatg ctcatggtct tcatatacct
     1861 ctcgcgcggc gagaaggcga aggcgcgggc cgaggtcgcc cggctaacca agcaggcgcc
     1921 caacgaggcg gccgtctatt tcgtcaaggg cgcgctcaac cgcctggacg gcgagtacga
     1981 ccgcgccctg cgcgccttcg agcgcctcgc gcgccttgac ccggccgcgc gcgtcgtcgc
     2041 gagctacaac cgcgcccgcg tcttcatgta ccagcaccgc ctcgacgacg cgctgctgga
     2101 gctcgaacag ggcgcgcgca tcgagcccga ccacccgctc gtccgcacct tccgcgccgt
     2161 cgtgctcggc cgccgcggcg acgtggccga ggccgtgaag attctcagcg acgtgctcga
     2221 agagcacccg cagatgcacg gcatacggcc gctcctcgcg cagcagctaa tcaagcaggg
     2281 cgacacggag gcggc
//
LOCUS       DASPKR010000110         6730 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_400841, whole genome shotgun sequence.
ACCESSION   DASPKR010000110 DASPKR010000000
VERSION     DASPKR010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6730)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6730
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_400841"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2345)
                     /locus_tag="VD968_03210"
     CDS             complement(<1..2345)
                     /locus_tag="VD968_03210"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYE13433.1"
                     /translation="MSHEPPAEGSAGSYSTAEWIERLQTAEVAPYWLSAIIESADDAV
                     ISKTLDGIITSWNRGAELLFGYTADEMIGRSITVLIPEDHPDEEPAILARLRRGQRIG
                     HYETVRVRKDGSRVEVSLTVSPIRGADGTIIGASKIARDITEKQTAQRKLAETAERLN
                     LALEAARLGDWSWDAATDVVTLSEAAAQIFGIEPGSRVTWQQMRGMLHGEDAERARIA
                     VEESVAGGGDYDIEYRVVARGGSLRWVSAKGRGIYDDSGRARGMLGVVQDITHRKQTE
                     QTLAEQAEALRIIYEIGQVVSAELDLKKIVQAVTDAATELTGARFGSFFYNVLNEEGA
                     SYMLYTLSGAPRSAFEHFPMPRATDLFGPTFRGEGALRIPDVHKDPRYGKNSPYYGMP
                     AGHLPVTSYLAVPVVSRSGEVLGGLFFGHPEPGMFTEQHERIVTGLAAQASVAMDNAR
                     LYEAAKRARAEAEASAAENERLYREAQEAGRLKDEFLATLSHELRTPLTAILGWAHLL
                     RANKFDEGSQSRAFETIERNARAQAQLIDDLLDVSRVITGKLRLDIRPVEPGSFIEAA
                     IEAVRPAAEARGVRLQKVIDTGVVSVAGDPVRLQQVVWNLLSNAIKFTPRGGRVQVRL
                     ERVNSHIEISVSDDGAGIKPEFLPHVFDRFRQADQKTTRQHGGLGLGLSIVRHLVELH
                     GGTVRAESDGEGRGSTFTVLLPVAPVYWPEEAGARLHPAARETLPRYECPERLDGLRV
                     LVVDDERDARELLAAGLGQCGAEVVTASSAEEALEAMTRGK"
     gene            2540..5998
                     /locus_tag="VD968_03215"
     CDS             2540..5998
                     /locus_tag="VD968_03215"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYE13434.1"
                     /translation="MRTNSTTSYSSEERFRAVLEQAPFSIQVMSADGRILRVNRAWEE
                     LWGVTLEQIEGYNILEDRQLVEKGIMPYIVRAFSGEAVEIPPVLYDPNATIPDITRHV
                     EPQRWTKAVAYPIKDAGGRVVEIVLMHEDITARVAAEQSLKESEARYRALFETTSDGI
                     MVVSEEGRYVDVNESLCRILKAPRERLLGAHFSDFMLPERLDDARRAFDILRETGTFT
                     GDFPVRAADGSTVELEWNSRANFLPGLHVCVARDVTERRRAEEETARLSAQVEAERRR
                     LESLVASVPGVVWEAWGEPGASAQRINFVSGYVERMLGYTVGEWLSTPNFWLRIVHPD
                     DRERAARNASERFARGETGINRFRWVTKDGRAIHVETRSTVILDEHGRPAGMRGVTMD
                     ITEQVRQEANEHFLAEASTALSASLDYETTLATVARLAVPHFADWCAVDMLDSGGTAR
                     RLAVAHVDPAKVEWAREIYERYPPDPAEPRGLYNVLRTGESEYYPEITDQILVEGARD
                     PEHLEIMRRVGFRSVMLVPLKTRDGVLGVITFVNTESDRAHTPEDLAFAESLAARASL
                     AVENARLYRAEQQTRREAERTSDRLARLQAVSSALSHALTPEEVATAVIEQGLSSLGA
                     HAGAVVSLDASGEWLELTATLGFPPEVAGKWGRFPVSAAVPIAEAVRSQLPVFVESFD
                     DWGERYPCLGPLASVSGSRALVALPLNVEGRVIGALGLSFARPQGFADDDRAFMLALA
                     QQCALALSRARLYETEQRLRAEAEAANRVKDEFLATVSHELRTPLTAIVGWASMLRSN
                     VLDADSTARAVETIERNAKAQTQIIEDLLDVSRIITGTLTLNAHASDLGPVVDAAVDS
                     VRPAAASKGITIVAETEPGLGSVWGDPARLQQVMWNLLANAVKFTPPGGEVRVSVARS
                     GERARVTVSDTGQGISPDFLPFVFDRFRQADQRITRQHGGLGLGLSIVRHLVELHGGS
                     VRAESEGEGRGSTFTVELPFTASGEAEAGAPAAAHSPAGGAAASASDLAPSLDGLRVL
                     LVDDEPDARTLLTTVLEQRGAKVRAVASAAEALAELAEFGPDVLVSDIGMPGEDGYTL
                     LRKVRALGPSEGGRVPAVALTAYAREEDRMRALLAGYQVHVAKPVNPSEFIAVVGGLA
                     GVNFGK"
     gene            complement(6091..6387)
                     /locus_tag="VD968_03220"
     CDS             complement(6091..6387)
                     /locus_tag="VD968_03220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13435.1"
                     /translation="MPRGDKSKYTDKQKRQAEHIEEGYEERGLSEGEAERRAWATVNK
                     SSGGGKKPGGSGRGKKTNKAPAKKGGKKGGKASKGGGAKKGGSKKGGSKKGGSK"
     gene            complement(6563..6637)
                     /locus_tag="VD968_03225"
     tRNA            complement(6563..6637)
                     /locus_tag="VD968_03225"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6603..6605),aa:Asn,seq:gtt)
BASE COUNT          995 a         2367 c         2312 g         1056 t
ORIGIN      
        1 aactttcccc gcgtcatggc ttccagggcc tcctctgcgg atgacgcggt gacgacctca
       61 gccccgcact ggccgagccc cgcggcgagc aactcccgcg cgtcccgctc gtcgtccacg
      121 acgagcaccc gcaggccgtc gagcctctcc ggacactcgt agcgcgggag cgtctcgcgc
      181 gcggccgggt gcaagcgggc gcccgcctcc tcgggccaat atacgggcgc gacgggcagc
      241 agcaccgtga aggtggagcc gcgcccctcg ccgtcgctct cggcgcggac ggtgccgccg
      301 tggagctcga caaggtggcg gacgatggag agcccgaggc cgaggccccc gtgctgccgc
      361 gtcgtcttct ggtcggcctg gcggaagcgg tcgaagacgt gggggaggaa ctcgggcttg
      421 atgccggcgc cgtcatcgct cacggagatt tcgatgtgcg agttgacgcg ctcgagcctg
      481 acctgcacgc gcccgccgcg cggcgtgaac ttgatggcgt tcgacaggag gttccagaca
      541 acctgctgga gccgcacggg gtcgcccgcc accgagacga cgcccgtgtc aataaccttt
      601 tgcaggcgca cgccgcgcgc ttcggccgcg ggcctgacgg cctcaatcgc ggcctcgatg
      661 aaggagccgg gctctacggg ccttatgtcc agccggagct tgcccgttat gacgcgcgac
      721 acgtcgagca ggtcgtctat gagctgcgcc tgagcgcggg cgttcctctc aatcgtctcg
      781 aaggcgcggg actgcgagcc ctcgtcgaac ttgttggcgc gcagcaggtg cgcccagccg
      841 aggatggccg tcagcggcgt gcgcagctcg tgcgagagcg tggcgaggaa ctcgtccttg
      901 agccggccgg cctcctgagc ctcgcggtag agccgctcgt tctcggccgc cgaggcctcg
      961 gcctccgcgc gcgctcgctt cgccgcctcg tagagccgcg cgttgtccat cgcgaccgac
     1021 gcctgggcgg cgagccccgt gacgatgcgc tcgtgctgct cggtgaacat gcccggctcc
     1081 gggtggccga agaagaggcc gccgagaacc tcgcccgagc gcgagacgac ggggactgcc
     1141 aggtagctcg tcacgggcag gtggcccgcg ggcatgccgt agtaaggcga gttcttgccg
     1201 tagcgcggat ctttatgcac gtccgggatg cgcagggcgc cctcgccgcg gaaggtcggg
     1261 ccgaagaggt ctgtggcgcg cggcatgggg aagtgctcga aggccgagcg cggcgcgccc
     1321 gacagggtgt agagcatgta ggaggcgccc tcttcgttca gcacgttgta gaagaaggag
     1381 ccgaagcgcg cgcccgtcag ctccgtcgcc gcgtccgtga cggcctgcac gatcttcttc
     1441 aagtccaact cggccgagac tacctggccg atctcgtaga tgatccgcag cgcctcggcc
     1501 tgctcggcca gcgtctgctc ggtctgcttc ctgtgagtga tgtcctgcac caccccgagc
     1561 atgccgcgcg cgcggcccga gtcgtcatag atgccgcgcc ccttggccga gacccagcgc
     1621 agcgacccgc cccgcgcgac gacgcggtac tctatgtcgt agtcgccccc tccggcgacg
     1681 gactcctcga ccgcgatgcg ggcgcgctcg gcgtcctcgc cgtggagcat gccgcgcatc
     1741 tgctgccagg tgacgcgcga gccgggctcg atgccgaata tctgagcggc cgcctcggag
     1801 agcgtgacca cgtcggtcgc ggcgtcccag ctccagtcgc cgaggcgcgc ggcttcgagc
     1861 gcgaggttca ggcgctcggc cgtctcggcg agcttgcgct gggcggtctg cttctccgtt
     1921 atgtcgcgcg ctatcttcga cgcgccgatt atcgtcccgt cggcgcccct gatgggcgag
     1981 accgtcagcg agacctccac gcgcgagccg tccttacgca cgcgaacggt ctcgtagtgg
     2041 cctatgcgct ggccgcggcg caggcgcgcg agtatggccg gctcctcgtc ggggtggtct
     2101 tcgggtatga ggacggtgat ggatctgcct atcatctcgt cggccgtgta gccgaagagc
     2161 agctcggcgc cgcggttcca gctcgtgatg atgccgtcga gcgtcttgct gatgacggcg
     2221 tcgtcggccg actcgatgat ggccgacagc cagtagggcg cgacctcggc ggtttgcagt
     2281 cgctcgatcc actcggcggt gctgtagctg ccggccgagc cttctgcggg cggttcgtgg
     2341 gacatggtca ggcttagacg gtctccgggc cttcggggcc gtgggctaaa taggggaaag
     2401 caagggggtg ccggcgatta tacacacccc cgctttattt gcacgccgct tttgtgcccg
     2461 ccgccgggcg gcgcgcggcg gcgcggccgt gctattctct cccggcctcg aggcgaaaag
     2521 aattcgacgc cggcccccga tgagaacgaa ctccaccacg tcctattcct cggaggagcg
     2581 cttccgcgcc gtcctcgaac aggcgccatt cagcatacag gtgatgtccg cggacgggcg
     2641 gatactgcgc gtcaaccgcg cgtgggagga gctttggggc gtcacgctcg aacagattga
     2701 gggctacaac atcctcgaag accggcagct cgtcgagaag ggcataatgc cctacatcgt
     2761 gcgcgccttc tcgggcgagg ccgtcgagat accgcccgtc ctctacgacc cgaacgccac
     2821 catccccgac atcacgcgcc atgtggagcc gcagcgctgg acgaaggccg tcgcctatcc
     2881 gattaaggac gcagggggcc gcgtcgtcga gatcgtgctc atgcacgagg acatcacggc
     2941 gcgcgtggcg gccgagcagt ctctgaagga gagcgaggcg cgctaccgcg cgctcttcga
     3001 gacgacgagc gacggcatca tggtcgtcag cgaagagggg cgctacgtgg acgtgaacga
     3061 gagcctctgc cggatactga aggcgccgcg cgagcgcctc ctgggcgcgc acttcagcga
     3121 cttcatgctg cccgagcgcc tggacgacgc gcgccgcgcc ttcgacatcc tgcgcgagac
     3181 cggaacgttc acgggcgact tccccgtgcg cgcggccgac gggagcaccg tcgagctgga
     3241 atggaactcc cgcgcaaact tcctgccggg cctgcacgtc tgcgtcgcgc gcgacgtgac
     3301 ggagcgcagg cgcgcggaag aggagaccgc gcggctctcc gcgcaggtgg aggccgagcg
     3361 caggaggctc gagagcctgg tggcgagcgt ccccggcgtg gtgtgggagg cgtggggaga
     3421 gccgggcgcc tcggcccagc gcatcaactt cgtgagcggc tacgtcgaga ggatgctggg
     3481 ctacacggtg ggggagtggc tctcgacgcc caacttctgg ctccggatag tccacccgga
     3541 cgacagggag cgcgcagccc gcaacgcctc cgagcgcttc gcccgcggcg agacgggcat
     3601 caaccgcttc cgctgggtga cgaaggacgg ccgcgccata cacgtcgaga cgcgctcgac
     3661 cgtgatactc gacgagcacg gccgcccggc aggcatgcgc ggcgttacga tggacataac
     3721 cgagcaggtc aggcaggagg ccaacgagca cttcctggcc gaggcgagca cggcgctctc
     3781 cgcctcgctc gactacgaga cgacgctcgc cacggtcgcg cgcctcgccg tcccccactt
     3841 cgccgactgg tgcgccgttg acatgctcga ctccggcggc acggcgcggc gcctcgccgt
     3901 cgcgcacgtt gaccccgcga aggtcgagtg ggcgcgcgaa atctacgagc gctacccgcc
     3961 cgacccggcg gagccgcgcg gcctctacaa cgttcttcgc acgggcgagt cggagtacta
     4021 cccggagata accgatcaga ttctcgtcga gggcgcgcgc gacccggagc atttggagat
     4081 catgcgccgc gtgggcttcc gctcggtgat gttagtcccc ctgaagacga gggacggcgt
     4141 gctcggcgtc atcacgttcg tcaacacgga gtcggatagg gcgcacacgc cggaagacct
     4201 cgccttcgcc gagagcctcg cggcgcgcgc ctcgctcgcc gtcgagaacg cgcggctcta
     4261 ccgcgccgag cagcagacgc gccgcgaggc cgagcgcacg tccgaccgcc tcgcgcgcct
     4321 ccaggccgtc tcctccgcgc tatcgcacgc gctcacgccc gaggaggtcg ccacggccgt
     4381 catcgagcag gggctgagct cgctgggcgc gcacgcaggc gcggtcgtct cgctcgacgc
     4441 atcgggcgag tggctggagc ttacggcgac gctcggcttc ccgccggagg tggcggggaa
     4501 gtgggggcgg ttccccgtct ccgccgcggt gccgatagcc gaagccgtgc ggagtcaact
     4561 gcccgtcttc gtcgagtcgt tcgacgactg gggcgagcgc tacccctgcc tcgggccgct
     4621 cgcgtccgtg tcgggcagcc gcgcgctggt cgcgctgcct ttgaacgtcg aggggcgcgt
     4681 aataggcgct ttgggcctca gcttcgcgcg cccgcagggg ttcgccgacg acgaccgcgc
     4741 cttcatgctc gcgctcgcgc agcagtgcgc gctcgccctc tcccgcgcgc gcctctacga
     4801 gaccgagcag cgcctgcgcg cggaggcgga ggccgccaac cgcgtcaagg acgagttcct
     4861 cgccaccgtc tcgcacgagc tccgcacgcc cctcacggcg attgtcggct gggccagcat
     4921 gctccgctcg aacgtgctcg acgccgactc caccgcgcgc gctgtcgaga ccatcgagcg
     4981 aaacgccaaa gcgcagacgc agataatcga agacctcctc gacgtgtcgc gcatcatcac
     5041 aggaacgctc accctgaacg cgcacgcctc cgacctcggc cccgtcgtgg acgcagccgt
     5101 tgactccgtg cggccggccg cagcatcgaa gggcatcacg atagtcgcgg agacggagcc
     5161 cggcctgggc tcggtgtggg gcgaccccgc gcgcctgcaa caggtgatgt ggaacctgct
     5221 cgcgaacgcc gtgaagttca cgccgccggg cggcgaagtc cgcgtctcgg tcgcgcgctc
     5281 gggcgagcgg gcgcgcgtca cggtctccga cacggggcag gggataagcc ccgacttcct
     5341 gcccttcgtc ttcgaccgct tccgccaggc cgaccagcgc atcacgcggc agcacggggg
     5401 cctcggcctc gggctctcca tcgttcgcca cctcgtcgag ctccacggcg gctccgtccg
     5461 cgccgagagc gagggcgagg ggcgcggctc caccttcacg gtcgagttgc ccttcacggc
     5521 gtcgggcgaa gcggaggccg gcgccccggc cgcggcacac tccccggccg ggggcgcagc
     5581 cgcgtcggcc tccgacttgg ccccctcgct cgacggcttg cgggtgctgc tggttgacga
     5641 cgagccggac gcgcgcacac tgctcacgac ggttcttgag caacgcgggg cgaaggtgcg
     5701 cgctgtcgcg tcggccgccg aggcgctcgc cgagctcgcc gagttcgggc ccgacgtact
     5761 ggtgagtgac atagggatgc cgggcgagga cggctacacg ctcttgcgca aggtgagggc
     5821 gctcggcccc tcggagggcg ggcgcgtccc ggccgtcgcc ctgacggcct acgcgcgcga
     5881 ggaggatcgc atgcgggcgc tgctcgccgg ctaccaagtt cacgtcgcta agcccgtcaa
     5941 cccgtccgag ttcatcgccg tcgtcggcgg gcttgccggc gtcaacttcg gcaagtgaac
     6001 tagccccggc ggggcgtaaa cgcgaagacg gggcgaacgg tttttgccgt ccgccccgtc
     6061 gctcattcaa gcccctgacc ttccggcgct ctacttcgag ccgcccttct tagagccgcc
     6121 tttcttcgag ccgcccttct tggcgccgcc gcccttcgag gccttgccgc ctttcttgcc
     6181 gcccttcttt gcgggcgcct tgttagtctt cttcccgcgg ccggagccgc ccggcttctt
     6241 gccgccgccc gaagacttgt taaccgtcgc ccacgccctg cgctcggcct cgccctccga
     6301 cagcccgcgc tcctcgtaac cctcctcgat gtgctcggcc tgccgcttct gcttgtccgt
     6361 gtacttcgac ttgtcgcccc tcggcatact ctcctccctt ccgccgccgc ggtcgccacg
     6421 cggccgatgc tcgtaaaact tcgcgaacta tagcacgccc tgcgacggca gcgcggcgtg
     6481 aggcggaaca tcgaaacggg aaaaataacg ggaaaagcga aaacgggaag cccggaggct
     6541 tcccgtatct tattgaagaa attggctccg caggtaggac tcgaacctac aacccttcgg
     6601 ttaacagccg aatgctctgc cattgagcta ctgcggatga tagcttgtca acacggcggc
     6661 ggtctgaaga gcggcgctac gtgagaagag ttttatagca gacggcccgc ggaggcgtca
     6721 agcggggcgc
//
LOCUS       DASPKR010000111         3400 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1177410, whole genome shotgun sequence.
ACCESSION   DASPKR010000111 DASPKR010000000
VERSION     DASPKR010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3400)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3400
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1177410"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            196..855
                     /locus_tag="VD968_03230"
     CDS             196..855
                     /locus_tag="VD968_03230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13436.1"
                     /translation="MKKHVLVALVMCVTVSAIVFGIAGTSQEVRPQKQVAGARGGESL
                     REAAKRNGSAIASAHPNNLRLYEDVASLAGDSSAVVVGSVKSRSSSLLQPAGRMVVTD
                     YTVGVGEVLKGGLQPGSDVTVRTPGGRVVFEDGTTAEVQMPDYWKTPQQGKTYLLFLQ
                     KRGPQNFVLLGGPQGMFEVTPEGSVVPQVRASDKLMQNYNGKDFAAVRQEIPATAAGR
                     N"
     gene            891..1835
                     /locus_tag="VD968_03235"
     CDS             891..1835
                     /locus_tag="VD968_03235"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HYE13437.1"
                     /translation="MTRKVVVISFLALVATGSLMALAGGQHDPSPAARRELESRGIEV
                     NETSLLASVRKGDEDAVALLLAAGVSPDAADSQDKEKPTALSVAAMGGRAGVVRALLA
                     RGARANLAGRDGRTALMWAAWKGYTDIIEALLDAGADVNAEDAGGSTPLLFASSERRF
                     DTAFLLLNRGASPRARGRHGHTALSYAVLGGQEALARALISKGADLNVRDERRRTPLM
                     HAIMVGNLDMARMLVEAGANVNLADASGVTALMFAAEEGKIELTKLLLAKGANPHTRD
                     AAKTTALSRAQARGDVEAERLLNDKMFGQEKKEFKTWP"
     gene            1862..>3400
                     /locus_tag="VD968_03240"
     CDS             1862..>3400
                     /locus_tag="VD968_03240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13438.1"
                     /translation="MISEDAFSMPGSAGPSPGAAPRLFSSLRRLAAHRPWLCAVAVPC
                     AVLAAGVARDAAALLRYPAAVGLDGYYYVLQINALQQTGALHFPTGAPLVLYLMAGVG
                     YLTGEPVLAVKTTGLLLHFALGLGVLALLRSLTRSPWPGALGAAMVSASSLRLYMTAE
                     FVSNLGGLTFLVWAAWCALRYFRLRRRAWAAAALVLLAGGALSHRSILPLAASLALTS
                     VFAQFFLAPARGRAARMVALLALAALWLSPAVLATQGLFDLPPRLAGAISATPRPPFD
                     RYALAEEIILLLAAPLCILLIAKARPGAPGAAEVVIVSLALFSLLFTLNPFLNPQGGW
                     VGLAGRARGLAYIQAALLVPGLLWLLWRRSRLLVLYAAAALVPLMLLSAAAPPPRGIS
                     RDYLAERSVLTETLPALRVDVAPNSIVVARHGDEFLVTALTGLPSQQTPPNDSPRYGT
                     VYWLLHQAPPQTLDGSTIVLREGADGRFVGLLEDGRLRAKLGGLSDPERRRLFARNPH
                     LRRAF"
BASE COUNT          482 a         1176 c         1174 g          568 t
ORIGIN      
        1 accccaactg cgggcaggag tgccacaccg tctgcacgca ggtctgcacg accgagtgca
       61 cggtgtggga cgactacggc tactgctact ggtacgagca ggtctgcgac ccgcccgagt
      121 gccacgtcga gtgctggtag gccaactcgc gggcgcgggg ttagaccgtg tgactgaact
      181 ttgggagacg caaagatgaa aaagcatgtt ctcgtcgctc tggtgatgtg cgtgactgtg
      241 agcgccatcg ttttcggcat cgcggggact tcgcaggagg tcaggccgca gaagcaggtc
      301 gcgggcgcgc gcggcggcga gtcgctgcgc gaggcggcga agcgcaacgg ctcggcgata
      361 gccagcgcgc acccgaacaa cctgcgcctc tacgaggacg tggcgtcgct cgcgggcgac
      421 agctcggccg tcgtcgtcgg ctccgtcaag tcgcgctcga gcagcctgct ccagccggcc
      481 ggccgcatgg ttgtcaccga ctacacggtg ggcgtcggcg aagtcctgaa aggggggcta
      541 cagccgggct cggacgtgac tgtgagaact ccgggcgggc gggtcgtctt cgaggacggg
      601 acgacggccg aggtgcagat gcccgactac tggaagacgc cgcagcaggg gaagacctac
      661 ctgctcttcc tacagaagag ggggccgcag aacttcgtcc tgctcggcgg gccgcagggc
      721 atgttcgagg tcacgcccga agggtcggtc gtcccgcagg tgcgcgcctc ggacaagcta
      781 atgcagaact acaacggtaa ggattttgcc gccgtgcgcc aggagatacc tgcgacggca
      841 gccggccgca actgagttcg gcccggcact tcaccgagga ggtcgcgatt atgacgcgca
      901 aggttgttgt catcagcttc ttggcgctcg tcgccacggg cagtctcatg gcgctcgcgg
      961 gcgggcagca cgacccttcg cccgctgccc gacgcgagct ggaaagccgc ggcatcgagg
     1021 tcaacgagac ttcgctactc gccagcgtcc ggaagggcga cgaggacgcc gtggcgctat
     1081 tgctcgccgc gggcgtaagc cccgacgccg ccgactcgca ggacaaggag aagcctacgg
     1141 ccctgtccgt agccgccatg ggcggccgtg caggcgtcgt gcgcgcactg ctggctcgcg
     1201 gagcgagggc caacctcgca ggccgcgacg ggcgaaccgc cttgatgtgg gccgcgtgga
     1261 agggctacac ggacataatc gaggcgctgc tcgacgcggg cgccgacgtt aacgccgaag
     1321 acgcgggcgg cagcacgccg ctactgttcg cctcgtcgga gcggcgcttc gacactgcct
     1381 tcctgcttct gaacaggggc gcgagcccgc gcgcgcgcgg caggcacggc cacactgcgc
     1441 tgagctacgc ggtgctcggc ggccaggagg cgcttgcgcg cgcccttatc tcgaagggcg
     1501 ccgacctgaa cgtgcgggac gagcggaggc ggacgcccct tatgcacgct atcatggtcg
     1561 gcaacctcga catggcgcgc atgctggtcg aggcgggcgc gaacgtcaac cttgccgacg
     1621 cctccggcgt cacggcgctg atgttcgccg ccgaggaggg caagatcgag ctgacgaagc
     1681 tgctgcttgc gaagggggcg aaccctcaca cccgcgacgc cgccaagacc actgccctct
     1741 cgcgcgcgca ggcccgcggc gacgttgagg ccgagcggct tctgaacgac aagatgttcg
     1801 ggcaggagaa gaaggagttc aagacctggc cgtaagcctc cgcggcgagg ccgggaacct
     1861 tatgattagt gaggacgctt tcagcatgcc ggggagcgca ggcccttcgc cgggggcggc
     1921 cccccggctc ttttcctccc tgcgtcggct cgcggctcac cgcccgtggt tgtgcgcggt
     1981 ggccgtgccg tgcgcggtgc tggccgcggg cgtggcccgc gacgcggcgg cgctgctgcg
     2041 ctacccggcc gccgttgggc tagacggcta ctactacgtc ctacagatca atgccctgca
     2101 acagaccggc gctttgcact tccccacagg cgcgcccctc gtgctctacc tcatggccgg
     2161 cgtgggctat ctgacgggcg agccggttct cgccgtcaag acgacggggc tgcttctgca
     2221 cttcgccctc gggctgggtg ttctcgccct tctgaggagc ctcacgcgct cgccgtggcc
     2281 cggcgcgctc ggggccgcca tggtctcggc ctcaagcctc cgcctttaca tgaccgccga
     2341 gttcgtctcg aacctcggcg gcctgacctt tctcgtctgg gccgcgtggt gcgcgctccg
     2401 ctacttccgg cttagacgac gggcgtgggc cgcggcggcg ctcgtgctgc tcgcgggcgg
     2461 ggcgctcagc caccgctcga ttctgcccct ggctgcctcg ctcgcgctca cgtccgtttt
     2521 cgcacaattt ttcctcgccc ctgcgcgcgg ccgtgctgcg cgcatggtgg ccctgctggc
     2581 gctcgcggcc ctctggctct ccccggccgt gctcgccacg cagggcctct tcgatttgcc
     2641 gccgcggctc gcgggcgcga tttcggcgac gccgcgcccg cccttcgacc gctacgcgct
     2701 ggccgaggag ataattctgc tgctcgccgc gcctctctgc atccttctta tcgcaaaggc
     2761 gcggccgggc gccccgggcg ccgcggaggt cgtgatcgtc tctttagccc tcttcagcct
     2821 tttattcacg ctcaacccgt tcctcaaccc tcaaggcgga tgggtgggcc tcgcgggtcg
     2881 cgcccgcggc ctcgcataca tacaggccgc actgctcgtt ccgggcctgc tgtggttact
     2941 gtggcgaagg agccgcctgc tcgtccttta cgccgccgcg gcgctcgtgc cgctcatgct
     3001 tctgagcgcc gccgccccgc cgccgagggg gattagccgc gactatctgg ccgagcgctc
     3061 ggtgctgacg gagacgctgc ccgcgcttcg cgtagatgtt gcgccgaact ctatcgttgt
     3121 cgcgcgccac ggcgacgagt tcctcgtgac agcgttgacg gggctcccct cacagcagac
     3181 ccccccgaac gattctccgc gctacggcac tgtttactgg ctgctgcacc aggcgccgcc
     3241 gcagacgctc gacggctcga cgattgtgct ccgcgagggc gcggacggtc gcttcgtggg
     3301 gttgttagag gacggccgct tgcgtgcgaa gctgggcggc ctgagcgacc cggagcggag
     3361 acggctcttc gcacggaacc cgcacctgcg ccgggccttc
//
LOCUS       DASPKR010000112        12162 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1436553, whole genome shotgun sequence.
ACCESSION   DASPKR010000112 DASPKR010000000
VERSION     DASPKR010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12162)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12162
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1436553"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..2206)
                     /locus_tag="VD968_03245"
     CDS             complement(74..2206)
                     /locus_tag="VD968_03245"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HYE13439.1"
                     /translation="MQALWKALTAPLLVLIVALAPLTSLAADFKREVVYQIITDRFFD
                     GSTANNNPSQSPGLYDSTKTNWRAYWGGDLQGIQQKMSYLAGLGVTAIWISPHVDNLN
                     ANIPDGNGNPTASYHGYQGRDFKRTEEHFGDTTNGWAAFDNFVTAAHQAGIKVIVDFA
                     PNHSTQDNAGEFGALYDNGTLLGNYTNDTNGYFHHNGNIVNWDDRYQVQYYTLFNLAD
                     LNQEHATIDAYMKAAAKLYQDHGVDGFRIDAIKHITWGWQYSLANSIYTYKDSFLFGE
                     WYQSGTSDPLYRDSYKFANKSGISMLDFPLNTAIRNVFGSNANFSEIENVLVAEANNF
                     TWDEDLVTFIDNHDMTRFLSLNNNQTRLHQALAFILTQRGIPCIYYGTEQYLFDNTSG
                     GGDPYNRPMMNSFNTSTTAYTLTNRLSTLRRNNTAVAYGSHQQRWINPDVYIYERKFF
                     GNTVLVAINKGASATQITGLNTALPAGTHSDYLTGLLGGSSITVTTGSGGNNPVAAFS
                     LPAGAVAVWQRTESGGTPQIGSVGPTAAQPGVKVTLGGKNFGTTQGTVKFGTTTATVN
                     SWSATKIVATVPSVTNGNYNVTVTNSSGQVSNGIQFTVLTAKLIPVTFTVYNASPTQV
                     GDYIFLTGNTVELSNWATTWDAAVGPMLTPNYPNWFLNVSVPAGQTIQFKFIKIAAGG
                     AVTWEAGANHTYTVPTSGTGFVNVNWQY"
     gene            complement(2412..3443)
                     /locus_tag="VD968_03250"
     CDS             complement(2412..3443)
                     /locus_tag="VD968_03250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13440.1"
                     /translation="MRSRIVSACALAACASLPAWGAAAAAGAGAPAAQESKQEAKISG
                     GERDAAEKINKAKGPEAKLQAASEFIKKYPQSSLRPKVVEAVLASIQEATDAQLKISL
                     AEAFASVFNGPGEAEHAHGMLITAYLDTEKAEDAFRLAGPWLQKNPDDVDTMRRLAVV
                     ALNESIRGNNKFVEQGRQYGAKAIEMIESGRKPAGADDAQWANYKKQYHHALYRETGI
                     LAMRAGDSAATRQRLEKAAELGSPDPTVYLILSDIVYSDYEQTARQHQAAAAGPAKNE
                     LLKKANEQLDKVIEAYARAVAMTEGSPQHKEANTGMRQELEKYYKFRHNDSTDGLQQL
                     IDKYKKPAQ"
     gene            complement(3582..4154)
                     /gene="efp"
                     /locus_tag="VD968_03255"
     CDS             complement(3582..4154)
                     /gene="efp"
                     /locus_tag="VD968_03255"
                     /inference="COORDINATES: protein motif:HMM:NF001810.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HYE13441.1"
                     /translation="MALIGANELKRKMMIEVDGEPYAVVDVTFASPSARGATTMVRTR
                     LRHLLTGAVLEKSFRSGEKFGEPDVQLSPASFLYADAGGFHFMDEETFEQFALPQEQV
                     GDDRGYMTEGLRLQILKYNGDAVAMQLPQFVELAVAQTEPGVAGDRASGRDLKPATLE
                     TGLEARVPLFIKEGERVRVNTQTGEVVGRA"
     gene            complement(4193..6697)
                     /locus_tag="VD968_03260"
     CDS             complement(4193..6697)
                     /locus_tag="VD968_03260"
                     /inference="COORDINATES: protein motif:HMM:TIGR01701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FdhF/YdeP family oxidoreductase"
                     /protein_id="HYE13442.1"
                     /translation="MSEREQTRQAVAARGEAAEESSAVQPTHYHSRMEAEREAAGAEF
                     VHEVGDSSGAGVPGSRAGVRAQPPEDFTGGRVTAPEEVAGGLKAVWVATKHAAGEMGL
                     LRGARTLLRVNQKDGFDCPGCAWPDPDGERSHAEFCENGAKAVAEEATTARVTPDFFR
                     RWSVADLSQKSDYWLGKQGRITHPFVLRRGATHYEPVEWDDAFKLIAEELNSLASPDE
                     AAFYTSGRTSNEAAFLYQLFVRQFGTNNLPDCSNMCHESSGRGLTETIGVGKGTVTLE
                     DFRKASAVFVIGQNPGTNHPRMLTTLRDAKRRGCKIVHVNPLPEAGLNRFKHPQHPID
                     LVGGGTPLTDLFLQVRVNGDVALLKGLMKEVLEEESRRPGQVLDHAFIEEKTSGFEEF
                     RRALDSVGWEEIVEQSGVAREQIREAAEIFINSERTIVCWAMGLTQHKNAVSNVQEIV
                     NLLLLRGQIGRPGAGACPVRGHSNVQGDRTMGIWERPSDAFLDSLAREFDFEPPRRHG
                     LDTVETIKAMHDRRVKVFFAVGGNFLSATPDTEFTARALQNCRLTAHVSTKLNRAHLV
                     TGEQALILPCLGRTERDVQAGGEQFVSVENSMGVVHSSRGSLAPASEHLLSEPVIVAR
                     LARAVLGAKSKVNWEWLVEDYDRIRDLIERAIPGFDDYNRRVREPGGFYLPNLAREGT
                     FKTSTGRANFTVHELPRHELAPGQFLMMTVRSHDQFNTTIYGLDDRYRGIHNERRVVF
                     LNPEDLAEAGVSAGQVVDLVSHFEGEERRARRFIVVPYRIPRRCAATYFPEANVLVPV
                     RSVAEKSNTPASKSVVISLRPSAEPLRYDYDSADGR"
     gene            6862..7323
                     /locus_tag="VD968_03265"
     CDS             6862..7323
                     /locus_tag="VD968_03265"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HYE13443.1"
                     /translation="MNAFQLLKEDHQKVSGIFQQLEPTTENAIKTRQELFARLKQELD
                     IHAHIEETIFYPSIKREAETREIVLEGFEEHRVVKTLLGELEGMDVGAEEWAAKLKVL
                     KENVEHHVEEEEGEMFQKARQVLSEEQIEDLGAQMEEEKKNQKAKTSSAGA"
     gene            7482..7850
                     /locus_tag="VD968_03270"
     CDS             7482..7850
                     /locus_tag="VD968_03270"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYE13444.1"
                     /translation="MDQRVETIIRLMQADFCRKLSLDEMARAVNLSPSRLRHLFKEET
                     ALTPAQYLRRVRMQRADSLLAGTFMRVKEISHAVGMFNSSSFVRAYKKIRGQSPSEYR
                     RSSFLPGGDGPWEHDSQIVQ"
     gene            8127..8768
                     /locus_tag="VD968_03275"
     CDS             8127..8768
                     /locus_tag="VD968_03275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13445.1"
                     /translation="MTFRRGAQTASDQARRPDPTTILARVRKAKARGATEVTFPAPKA
                     FYADVGSLDEALLHYDAVIAKPVGKTSFLLDTHNVSTFYKFQIVERLSASKIGQASPL
                     SRSLPAGLPPAGPNQFYLMTGGGELTLEGVRVTVQSDMGELSPSQNYLLLMRLDQSGG
                     AGMVELGPYGVFKVGPDDAVESIVAKAHLLKSDMESRYGNSVARLRAELRRRN"
     gene            8819..9712
                     /locus_tag="VD968_03280"
     CDS             8819..9712
                     /locus_tag="VD968_03280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13446.1"
                     /translation="MRLYVCLFFLVGVCFLTFSGAAQTVCPECFYDQVPPVGHGQVDG
                     RTALNVFAEGFPSGQDEIVATAITVAAQGWNSATDTGAPGGNQIPYHLQTTSEPDQAD
                     FIVRLGTPTGSACASIDITAQPPVITVSMTAVESGNLEAILKHEFGHRFGLANAVGSA
                     ACGTSTSIMRGHAPGGCTMVVQEIQPSDVAQVRRNFDPSTRPTCTEPGGAASPMQEET
                     GPSCPDNDFDGVTTCDGDCDDFDPSYTYDCYYNYYQYPECYARYEVTDYYYCTSSDGG
                     ETWSCRYQYSTWEYMYTYCYY"
     gene            9753..10451
                     /locus_tag="VD968_03285"
     CDS             9753..10451
                     /locus_tag="VD968_03285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13447.1"
                     /translation="MRKRIILVCTMAMTVVAIMVLARAQDIGPVTLRERALVTGNYVK
                     IASASQTPMFQDLDQLGAASTLIIKGTVRENISKLSADGNFISTNYTVVVDQVFKGSL
                     VTVNDSITVSIPGGKVGFRGRTPDKPAFAEVKAPWFKRMEDGKQYYLFLSPDRPAPTT
                     QNIPNPSGLVPFLPTGGPQGVFEVAGGVVKTHSGRPLDPVRAYNNAAVSSFNQQVVVA
                     AQPHSPTVLVPVDH"
     gene            complement(10577..11131)
                     /locus_tag="VD968_03290"
     CDS             complement(10577..11131)
                     /locus_tag="VD968_03290"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HYE13448.1"
                     /translation="MGRKHGPYTIESSECLHRDEFGEFWVDEVVKPNGERGRYATMRM
                     LPGISVLALDGEGFVYLVKQFRYAVGKESVEAVAGGVEGGESEEEAARRELREELGVE
                     AGELVDLGLVDAVTSQVFSPSRIFLARDLKFGADADGDEVERLEPLKVRLEEAVRMVL
                     EGEITQSTTAVLVLKADRYLQDEG"
     gene            complement(11160..11705)
                     /locus_tag="VD968_03295"
     CDS             complement(11160..11705)
                     /locus_tag="VD968_03295"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE13449.1"
                     /translation="MAAEVTTVRPARSAHSPAPTQPNAPALAGAASFVVIGSGAAGCV
                     AAGLLADRVGRTVVTSAAMIVSGACCVLVGFAYGASPALLLAVAAVWGASVVADSAQF
                     SACVTELGDARYMGTALTVQTCCGFLLTTVSIHLIPLLVGWVGWRYAFVALAPGPALG
                     TLAMLRLRRLPEAARIAHGRR"
     gene            11599..12063
                     /locus_tag="VD968_03300"
     CDS             11599..12063
                     /locus_tag="VD968_03300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13450.1"
                     /translation="MTTNDAAPASAGALGCVGAGLWADRAGRTVVTSAAMCVSGACCL
                     LVGFLYGAHPALLLAVAAVWGASVVADSAQFSACVTELGDPRYMGTALTVQTCCGFLL
                     TTASIHLVPAVADADGWRYAFAALAPGPLLGTLAMLRLRRLPEAARIAGGRR"
BASE COUNT         2001 a         3888 c         4086 g         2187 t
ORIGIN      
        1 ggattaagag cgcccttaga tgcttttatc ccgcataccc tgtgaacccc tcccgaggct
       61 ctaatccgag gctctaatac tgccagttga cgttgacgaa gcccgtcccc gaggtgggga
      121 cggtgtaggt gtggttggcc ccggcctccc acgtgacggc gccgcccgcg gcgatcttga
      181 tgaacttgaa ctgtatggtc tgcccggcgg ggacgctcac gttcaggaac cagttcgggt
      241 agttgggcgt gagcatcggg ccgacggcgg cgtcccatgt ggtcgcccag ttgctaagct
      301 cgacggtgtt gcccgtcagg aagatgtagt cgcctacctg cgtggggctg gcgttataga
      361 cggtgaaggt gacggggatg agcttcgccg tcagcaccgt gaactgtatg ccgttcgaga
      421 cctggcccga cgagttcgtg accgtcacgt tgtagttgcc gttcgtcacg ctcggcaccg
      481 tggcgacaat cttcgtcgcc gaccacgagt tcaccgtcgc cgtcgtcgtc ccgaacttca
      541 cagtcccctg cgtcgtgccg aagttctttc cgccgagcgt gactttcacg ccgggctgcg
      601 ccgcggtcgg gccgacggag cctatctgcg gcgtgcctcc cgactcagtg cgctgccaga
      661 cggcgaccgc gcccgcgggc agcgagaagg cggcgacggg gttattgccg cccgagcccg
      721 tcgtgaccgt gatggacgag ccgccgagca ggcccgtcaa atagtcggag tgggtgccgg
      781 ccgggagcgc cgtgttcagg cccgttatct gcgtcgccga ggcgcccttg ttgatggcga
      841 cgagcacggt gttgccgaag aacttccgct cgtagatgta aacgtccggg tttatccagc
      901 gctgctggtg cgagccgtaa gcgacggccg tgttgttgcg ccggagcgtc gagagccggt
      961 tcgtaagggt gtaggccgtc gtcgaggtgt tgaaggagtt catcatcggg cggttgtacg
     1021 ggtcgccgcc gcccgacgtg ttgtcgaaga ggtactgctc cgtgccgtag tagatgcagg
     1081 gtatgccgcg ttgcgtgagg atgaaggcga gggcctggtg caggcgcgtc tggttgttgt
     1141 tcaggctgag gaagcgcgtc atgtcgtggt tatctatgaa agtgacgagg tcttcgtccc
     1201 acgtgaagtt gttcgcttcg gcgacgagga cgttctctat ctcgctgaag ttggcgttcg
     1261 agccgaatac gttgcgtatg gcggtgttca aggggaagtc gagcatcgag atgccgctct
     1321 tgttggcgaa cttgtaggag tcgcggtaga gagggtcgct cgtgcctgac tgataccact
     1381 cgccgaagag gaagctgtcc ttgtaggtgt agatggagtt ggcgagtgag tactgccagc
     1441 cccaagtgat gtgcttgatg gcgtcaatgc ggaagccgtc cacgccgtga tcctgataga
     1501 gcttggcggc cgccttcatg taggcgtcaa tggtggcgtg ctcctggttg aggtcggcga
     1561 ggttgaagag cgtgtagtac tgaacctggt agcggtcgtc ccagttcacg atgttgccgt
     1621 tgtggtggaa gtagccgttg gtgtcgttgg tgtagttgcc gaggagggtg ccgttgtcgt
     1681 agagggcgcc gaactcgccg gcgttgtcct gcgtcgaatg attcggcgcg aagtcaacga
     1741 ttaccttgat gcccgcctgg tgcgcggccg tcacgaagtt gtcgaaggcc gcccagccgt
     1801 tcgtcgtgtc gccgaagtgc tcctcggtgc gcttgaagtc gcggccctgg tagccgtggt
     1861 aggaggccgt cgggttcccg ttgccgtcgg gtatgttggc gttcaggttg tcaacgtgcg
     1921 gggaaatcca gatggccgtc acccccagcc ccgcgaggta ggacatcttc tgctgtatgc
     1981 cctggaggtc gccgccccag taggcgcgcc agttggtctt ggtcgagtcg tagaggccgg
     2041 gcgactgcga ggggttgttg ttggcggtcg agccgtcgaa gaagcggtcg gtgattatct
     2101 gatagacgac ctcgcgcttg aagtcggccg cgagcgaggt gagcggcgcg agcgcgacga
     2161 tgaggacgag caggggcgct gtcagggctt tccaaagagc ttgcatggtg gggtctctcc
     2221 cgcgggcggc tggccccgct ctaagcgcgc cgggcggcgc gcgtcgtcgg agggtcgtgc
     2281 gaggcttacg gcttcctaac cctttcggcg gcccggcaag tgcggccgcg ccgagggggc
     2341 gtgagtatag caaagagggg ggcaaggcgc gggggccgaa cgtcgggcct gtcggccccc
     2401 gcctgtcgtg actactgcgc gggcttcttg tacttgtcta tgagctgctg gaggccgtcg
     2461 gtcgagtcgt tgtggcggaa cttgtaatac ttctctagct cctgccgcat cccggtgttc
     2521 gcctccttgt gctgcgggct gccttcggtc attgccacgg cgcgcgcgta agcctctatg
     2581 accttgtcga gctgctcgtt ggccttcttg agcagttcgt tcttagcggg gccggcggcc
     2641 gccgcctggt gctggcgcgc cgtctgctcg tagtcgctat agactatgtc gctcagtatc
     2701 agatagacgg tcgggtcggg cgagcccagc tcggccgcct tctcgagcct ctggcgcgtg
     2761 gcggcgctgt cgcccgcgcg catggcgagg atgcctgtct cgcggtagag ggcgtggtgg
     2821 tactgcttct tgtagttggc ccactgcgcg tcgtcggccc ccgcgggctt gcggcccgac
     2881 tcaatcatct ctatggcctt agcgccgtac tgccggccct gctcgacgaa cttgttgttg
     2941 ccgcgtatag actcgttcaa ggctacgacg gcgaggcgcc gcatcgtgtc gacgtcgtcg
     3001 gggttcttct ggagccaggg gcccgcgagc cggaaggcgt cctcggcctt ctccgtgtcg
     3061 aggtaggcgg tgatgagcat gccgtgggcg tgctcggcct cgccggggcc gttgaagacg
     3121 gaggcgaaag cctcggccag agaaatcttg agctgcgcgt cggtcgcctc ctgtatggag
     3181 gcgagcacgg cctcgacgac cttcgggcgt agagagctct gcgggtactt ctttatgaac
     3241 tccgaggcgg cctgtaactt cgcctccggc cccttcgcct tgtttatctt ctcggcggcg
     3301 tcgcgctcgc cgcccgaaat cttcgcctcc tgcttcgact cctgcgccgc gggcgcgccg
     3361 gctcccgctg cggccgccgc cccccacgcc ggcaacgatg cgcacgccgc cagagcgcac
     3421 gccgaaacga ttcttgacct catgtgcatc accccgttcg gattctgatt tattcccgac
     3481 ctgcgtttac gcgctaggtt acaacaggcc agaggctgga gactaggggc tagaggctgg
     3541 ttaaagagaa tgtttttaaa ctagcctcca gcctcttctt ttcacgcgcg gccgacgacc
     3601 tcgccggtct gcgtgttgac gcgcacgcgc tcgccctcct tgatgaagag cgggacgcgc
     3661 gcctcgaggc cggtctccag cgtggcgggc ttaaggtcgc gccccgaggc gcggtcgccc
     3721 gcgacgcccg gctcggtctg agcgacggcg agctcgacga actgcgggag ctgcatggcg
     3781 acggcgtcgc cgttgtactt gagtatttgg aggcgcagcc cttccgtcat gtagccccgg
     3841 tcgtcgccca cctgctcctg tgggagcgcg aactgctcga acgtctcttc atccatgaag
     3901 tggaagcccc cggcgtccgc gtagaggaac gaggcgggcg acagttgcac gtccggctcg
     3961 ccgaacttct cgccggagcg gaagctcttc tcgaggaccg cgcccgtgag caggtggcgc
     4021 aggcgtgtcc gcaccatcgt cgtcgcgccg cgcgccgagg gcgacgcgaa ggtaacgtcc
     4081 acgacggcgt agggctcgcc gtcaacctca atcatcatct tccgcttcag ctcgttcgcg
     4141 cctatcaggg ccacgcggct ctctcctcaa gtgagtaaaa gtattcggtt cgtcatcggc
     4201 cgtcggcgct gtcgtagtcg tagcgcagcg gctcggccga ggggcgaagg cttatcacga
     4261 cggacttgga ggccggcgtg ttgctctttt cggcgacgct gcggacgggg actaagacgt
     4321 tcgcctcggg gaagtaggtc gcggcgcagc gtcgcggtat ccggtagggg acgacgatga
     4381 agcggcgcgc ccgtcgctcc tcgccctcga aatggctcac gaggtcaacc acctgaccgg
     4441 ccgagacgcc ggcctcggcc aagtcttcgg ggttcaagaa gaccacgcgg cgctcgttgt
     4501 gtatgccgcg gtagcggtcg tcgaggccgt agatggtcgt gttgaactgg tcgtggctgc
     4561 ggacggtcat catgaggaac tgccccggcg caagctcgtg gcgcggcagc tcgtggacgg
     4621 tgaagtttgc gcgccctgtt gaagttttga acgtgccttc gcgcgcgagg ttgggcaggt
     4681 agaagccgcc gggctcgcgc acgcggcggt tgtagtcgtc gaagccgggt atggcgcgct
     4741 ctatcaggtc gcgtatgcgg tcgtagtctt cgaccagcca ctcccagttg accttgctct
     4801 tcgcgccgag cacggctcgc gccaggcgcg cgactatgac gggctcgctt aagagatgct
     4861 cggacgcggg cgcgaggctc ccgcgcgagg agtggacgac gcccatcgag ttctcgacgc
     4921 tcacgaactg ctcgcctccg gcctgcacgt cgcgctcggt gcggccgagg cagggcagta
     4981 tcagcgcctg ctcgccggtg acgaggtgcg cgcggttgag cttcgtggag acgtgcgccg
     5041 tcagccggca gttttggagc gcgcgggcgg tgaactcggt gtcgggcgtg gcagagagga
     5101 agttgccgcc gacggcgaag aagactttga cgcggcggtc gtgcatggcc ttgatggtct
     5161 cgacggtgtc gaggccgtgg cggcgcggcg gctcgaagtc gaactcgcgc gccagcgagt
     5221 cgaggaaggc gtccgaaggc cgctcccaga tgcccatcgt gcggtcgccc tgcacgttcg
     5281 agtggccgcg cacggggcat gcgcccgcgc cgggccgccc tatctgaccg cgaagaagaa
     5341 gcaggttgac tatctcctgc acgttcgaga cggcgttctt gtgctgcgtg agccccatgg
     5401 cccagcagac gattgtgcgc tccgagttga tgaagatttc cgccgcctcg cgaatctgct
     5461 cgcgcgccac cccgctctgc tcgactatct cttcccaccc tacggagtcg agcgcgcgcc
     5521 tgaactcctc gaagccggag gtcttctctt ctatgaatgc gtggtctaaa acctgaccgg
     5581 ggcggcgcga ctcttcttcc agcacctcct tcatcaagcc cttcagcagg gccacgtcgc
     5641 cgttgacgcg gacttgcagg aagaggtctg tgagaggggt gccgccgccg actaaatcta
     5701 tcgggtgctg cgggtgcttg aagcggttga ggccggcttc gggcaggggg tttacgtgaa
     5761 caatcttgca gccgcgcctt ttcgcgtcgc ggagcgtggt gagcatgcgc gggtggttgg
     5821 tgccggggtt ctggccgatg acgaagacgg cagaggcttt acggaagtct tcgagcgtga
     5881 ccgtcccctt gccgacgccg atggtctccg tcaggccgcg ccccgaagac tcgtggcaca
     5941 tgttcgagca gtcgggcagg ttgttagtgc cgaactgtcg gacgaatagc tggtatagaa
     6001 aggcggcctc gttcgacgtg cggcccgaag tgtagaaggc agcctcgtcg ggcgacgcga
     6061 gtgagttaag ctcttcggcg attaacttga aggcgtcgtc ccactcaacc ggctcgtagt
     6121 gcgtggcgcc gcgccgcagc acgaaggggt gcgttatgcg cccctgcttg ccgagccagt
     6181 agtctgactt ctgcgagagg tctgcgacgc tccagcggcg gaagaagtcg ggggtgacgc
     6241 gcgccgtcgt cgcctcctcg gcgacggcct tcgcgccgtt ctcgcagaac tcggcgtgcg
     6301 agcgctcgcc gtcagggtcg ggccacgcgc agcccgggca gtcgaagccg tccttctggt
     6361 tgacgcgaag gagcgtgcgc gcgccgcgca gcagtcccat ctcgccggcg gcgtgcttcg
     6421 tcgcgaccca cacggccttc aggccgcccg cgacctcctc tggcgccgtg acgcgcccgc
     6481 ccgtgaaatc ctccggcggc tgcgcgcgca cgcccgcgcg cgagcccggc acgcccgcgc
     6541 cggaactgtc gccgacctcg tggacgaatt cggcgccggc cgcctcccgc tcggcctcca
     6601 tgcgcgagtg gtagtgcgtc ggctgcacgg ccgaagactc ctcggccgcc tcgccgcgcg
     6661 ccgccaccgc ctgccgcgtc tgctcccgct cgctcatcgt gtcggttccc tttgcgccga
     6721 gagtttacta cagcggccga cgccgcccga aacgcccgcc gcccgactgg cactcggctt
     6781 gattgttaat cgtggggcgc tcgtgcgcgc gtatcgttag cgtgcaggcg cagggtttta
     6841 acaaacgaca ggagggaaca gatgaacgct tttcagcttt tgaaagagga tcaccagaaa
     6901 gtttcaggca tcttccagca gctcgagccg acgaccgaga acgccatcaa gacgcggcag
     6961 gagctgttcg cgcgcctcaa gcaggagctc gacattcacg cgcacataga ggagacgatc
     7021 ttttacccgt ccatcaagcg cgaggccgag acgcgcgaga tagtgctcga aggcttcgag
     7081 gagcaccgcg tcgtcaagac gctgctcggc gagctggaag gcatggacgt cggcgccgag
     7141 gagtgggccg ccaagctcaa ggtcttgaag gagaacgtcg agcaccacgt cgaggaggag
     7201 gagggcgaga tgttccagaa ggcccgccaa gtcctgagcg aggagcagat cgaagacctc
     7261 ggcgcgcaga tggaggaaga gaagaagaac cagaaggcca aaacctcatc cgccggggcg
     7321 tgagcgcggc cccgccgagt ttccggagcg cgggacggct cgcccgcccc gcgctctttc
     7381 ttcgcctcaa ggattcctca accaccctcc acttaacatt acgcacccca caaccctctc
     7441 ttaaccctcg cgctactttt gatctgaagg agttacctca tatggatcaa agggtggaga
     7501 cgatcattcg cctcatgcaa gccgacttct gccgtaagct ctcgctcgac gagatggcgc
     7561 gggccgtgaa cctctcgccg tcgcgcctgc gccacctgtt caaggaggag acggcgctga
     7621 cgcccgccca atacctgcgg cgggtcagga tgcagcgggc ggacagtctg ctcgcgggta
     7681 cgttcatgcg cgtgaaggag atcagccacg ccgtcggcat gttcaacagc agctccttcg
     7741 tgcgggccta caagaagatt cgcgggcagt cgccgtccga atacagaagg agcagctttc
     7801 ttcccggcgg cgacggcccg tgggagcacg atagccagat agtgcagtga atagccactt
     7861 cggcaaataa aattctcttg cggcggggaa cgcgaagtag taaaaagctg gcaccccgaa
     7921 aaattcagcg gagaccttaa acaggtcggg ggcgccgtga cgcctcgcac accggcagcg
     7981 ccccggcacg actttcacgg cgccccgtgc gcggcggaca gccgcggggg ctcggggcgg
     8041 cacaaacgtc ggagatgacg ccgatgagat ataaaattgc gtcgctaacc atcttgctgg
     8101 cggtcgccgc ggtggccgca ttaggaatga cttttcgaag aggggcacag acggcctcgg
     8161 atcaggcgag gcggcccgac ccgacgacga tccttgcgcg cgtgcggaag gcgaaggcga
     8221 ggggcgcgac ggaagtgacc ttcccggccc cgaaggcgtt ctacgccgat gtcggcagtc
     8281 tggacgaggc ccttttgcac tacgacgccg tcatcgccaa gcccgtcggg aagacgagct
     8341 tcctgctcga cacccacaac gtctcgacct tctacaagtt tcagatcgtg gagaggctgt
     8401 ccgccagcaa gatcgggcag gcgagcccac tctcgcggag cctgccagcc gggctgccgc
     8461 ccgccgggcc taaccagttc tacctgatga cgggcggcgg ggaactgacc ctcgaagggg
     8521 ttagagtcac cgtccagtcc gacatgggcg aactctcccc gtcgcagaac tacctactcc
     8581 tcatgagact cgaccagtcg ggcggcgccg gcatggtcga gctcggcccg tacggcgtct
     8641 ttaaagtcgg ccccgacgac gccgtcgaat ccatcgtcgc gaaagcgcac ttgctgaaga
     8701 gcgacatgga gagccgctac gggaattccg tcgcccggct gagggcggaa ctccggcgcc
     8761 gtaactaacc cccgctaaaa ctcgacccac gacatttaag ctgtgaggga ggcggcttat
     8821 gaggctctac gtgtgtctgt ttttcctcgt cggcgtctgc tttctgactt tctcgggcgc
     8881 ggcccagacg gtctgccccg agtgcttcta cgatcaggtg ccgcccgtcg ggcacggcca
     8941 agtggacggg cgcaccgcgc tcaacgtctt cgccgagggg ttcccttctg ggcaggacga
     9001 gatagtcgcc accgccataa cggtcgcggc gcaggggtgg aactcggcca cggacacggg
     9061 cgcgccgggg gggaaccaga ttccctacca cttacagacg acctcggagc cggatcaggc
     9121 cgacttcatc gtcaggctgg ggacgccgac cggcagcgcg tgcgccagca ttgacatcac
     9181 cgcccagccg cccgtcatca ccgtcagcat gaccgccgtc gagagcggga acctcgaagc
     9241 catcctcaag cacgagttcg gccaccggtt cggcctcgcc aacgcggtcg gctccgcggc
     9301 ctgcggcacg agcacctcca tcatgagggg gcacgcgccg ggcggctgca ccatggtggt
     9361 tcaggagatt cagccctccg acgtggcaca ggtgaggagg aatttcgacc cgagcactcg
     9421 cccgacctgc accgagccgg gaggcgccgc ctctcccatg caggaggaga cggggccttc
     9481 gtgccccgac aacgacttcg acggcgtgac gacctgcgac ggggactgcg acgacttcga
     9541 cccgtcctac acctacgact gctactacaa ctattaccag tacccggagt gttacgcccg
     9601 ttacgaggtg acagactact actactgcac cagtagcgac ggcggtgaga cttggtcttg
     9661 tcggtatcaa tactcgacat gggaatacat gtacacgtat tgctactact gaggcacggg
     9721 tccgacgact tctttacggg ggactaacag ttatgaggaa gcgaatcatc cttgtgtgca
     9781 cgatggcaat gacggtcgtc gccatcatgg tgttggcccg cgcgcaggac atcgggccgg
     9841 tcacgctgag ggagcgggcg ctcgtgacgg gcaactacgt gaagatcgcg agcgccagcc
     9901 agacgccgat gttccaggac ctcgatcagt tgggcgcggc gagcaccctc atcatcaagg
     9961 gcaccgtcag ggagaacatc agcaagctct cggcggacgg caacttcatc tcgaccaatt
    10021 acacggtggt cgttgaccaa gtcttcaagg gcagcctcgt gacggtgaac gactcgatca
    10081 cggtgagcat acccggcggc aaggtgggct tccgggggag gacgcccgac aagcccgcgt
    10141 tcgcggaggt caaggcgcct tggttcaaga ggatggagga cggcaagcag tactacctct
    10201 tcctgtcgcc cgacaggccc gcgccgacga cgcagaacat cccgaacccc tccggcctcg
    10261 tcccgttcct gccgaccggc gggccgcagg gagtgttcga ggtcgccggg ggcgtcgtga
    10321 agacgcacag cggtcgcccc ctagaccccg tccgggccta caacaacgcc gccgtctcca
    10381 gcttcaacca gcaggtggtg gtggcggcgc agccgcattc tccgactgtc cttgtgccgg
    10441 tagatcacta gccccgacgc agctttaccg ccggggcgag gccggctggg aggccacgca
    10501 aacgcacggc gttcttcatt agcgctcccg cccatcttcc tgacgggaag atgggcggga
    10561 gcgtgcgcgc ctaaatttac ccctcgtctt gaaggtatct gtcggccttg agcacgagca
    10621 cggcggtcgt tgactgcgtt atctctccct caagaaccat cctcacggcc tcttccagcc
    10681 tgaccttcaa aggctcaagc cgctcgacct cgtcgccgtc ggcgtcggcg ccgaacttca
    10741 ggtcgcgcgc gaggaatatg cgcgaaggcg agaagacctg cgacgtgacg gcgtcaacca
    10801 gcccgaggtc aaccagctct ccggcctcga cgcccagctc ctcccgaagc tcgcgccgcg
    10861 cggcctcctc ctccgactcg cccccctcga cgccgcccgc caccgcctcg acgctctcct
    10921 tccccacggc gtagcggaac tgcttcacga gatagacgaa gccctcgccg tccagcgcga
    10981 gcaccgagat tcccggcagc atcctcatcg tcgcgtagcg cccgcgctcg ccgttaggct
    11041 tcaccacctc gtcaacccag aactccccga actcgtcgcg gtgcaggcac tccgaagact
    11101 ctatcgtgta aggcccgtgc ttgcgtccca tgaaacctcc ttgaaaagtt gagagcccct
    11161 cagcgcctcc cgtgcgcgat gcgcgcggcc tcgggcagcc tccgcagccg gagcatggcg
    11221 agcgtgccga gcgcggggcc gggcgcgagc gcgacgaagg cgtagcgcca gcccacccac
    11281 ccgaccagga gcggtatcag atgaatcgag acggtcgtga gcaggaagcc gcagcaggtc
    11341 tgcacggtga gcgccgtccc catgtagcgc gcgtcgccca gctccgtcac gcacgccgag
    11401 aactgcgccg agtcggccac gacgctcgcg ccccacacgg ccgccaccgc gagcagaagc
    11461 gccgggctcg ccccgtaagc gaatccgacg agcacgcagc acgcgccgct tacaatcatc
    11521 gccgcggacg tgacgacggt gcgccccacg cggtcggcca gaagccccgc ggcgacgcag
    11581 cccgcggcgc ccgagcctat gacaacgaac gacgcggccc cggcgagcgc gggcgcgttg
    11641 ggctgcgtcg gggcggggct gtgggccgac cgcgcgggcc ggacggtcgt gacctcggcg
    11701 gcgatgtgcg tgagcggcgc gtgctgcctg ctggtcgggt tcctgtacgg cgcgcacccg
    11761 gcgctgctgc tggcggtggc ggccgtgtgg ggcgcgagcg tggtggccga ctcggcgcag
    11821 ttctcggcct gcgtcaccga actcggcgac ccgcgctaca tggggacggc gctgaccgtc
    11881 cagacctgct gcgggttcct gctgacgacg gcctcgatcc acctcgtccc cgccgtcgcc
    11941 gacgcggacg gctggcgcta cgccttcgcg gcgctcgcgc ccggccccct gctcggcacg
    12001 ctcgccatgc tgcggctgcg ccggctgccc gaggcggcgc ggatcgcggg cggtagaagg
    12061 taagggccgc gaaccgtgaa tcgtgaatag agaaaaggcc gttccgattc acgattcacg
    12121 gttggcgatt cacgattcac gaaaggggtt tcatggggaa ga
//
LOCUS       DASPKR010000113         5596 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_142816, whole genome shotgun sequence.
ACCESSION   DASPKR010000113 DASPKR010000000
VERSION     DASPKR010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5596)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5596
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142816"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..578
                     /locus_tag="VD968_03305"
     CDS             <1..578
                     /locus_tag="VD968_03305"
                     /inference="COORDINATES: protein motif:HMM:NF020071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent helicase C-terminal
                     domain-containing protein"
                     /protein_id="HYE13451.1"
                     /translation="TSRRSTSAPRSGGAPFADREDVGRLLARVEFVARTFPEANLPEL
                     GEEDVLAALASMCEGRRSFAELREAARRGELLEHLRARLTPEQSRLLATMAPERVALA
                     SGRQARVQYEPGQSPYVASRLQDFFRMREAPRIAAGRAPLVLHLLAPSQRPVQVTSDL
                     AGFWSRHYPRVRRELGRRYPRHAWPEDPLNP"
     gene            764..997
                     /locus_tag="VD968_03310"
     CDS             764..997
                     /locus_tag="VD968_03310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13452.1"
                     /translation="MPELRGKQATEDVKEEWKRAYDYYLRAPGVPHNKKLDRTERINY
                     VADQMKLTRKQAKRRVKNYEAWQRNIKKGLVTP"
     gene            1021..1749
                     /locus_tag="VD968_03315"
     CDS             1021..1749
                     /locus_tag="VD968_03315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13453.1"
                     /translation="MQSLSHQPSAAKGAPPDLGAEVERLEVLLSERRAELSALQAELR
                     DFKVRYAHTVGARLAELAEVEAEIRKAQAGALGLDEEGEDEGEEERAASFYETRPAPS
                     GGAGLKRLFWSVARMFHPDHASDEQEARRRHSIMAEASRAYRDGDVDSLHSLLGDEHL
                     QSFCASAGRDEEPEDLPTRLLNLKEELRTIEFGIKRARHDGLYQLMLKARSEAAEGRD
                     ALASMAESITRQIAKARRRLEHFS"
     gene            1808..2062
                     /locus_tag="VD968_03320"
     CDS             1808..2062
                     /locus_tag="VD968_03320"
                     /inference="COORDINATES: protein motif:HMM:NF015639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HYE13454.1"
                     /translation="MECRVGCGACCVAPSISTPIPGMPEGKPAGVRCVQLTSDNRCLL
                     FGRPERPAVCTSLRPTEEMCGLSAREAYTRLARLERRTKK"
     gene            2276..2686
                     /locus_tag="VD968_03325"
     CDS             2276..2686
                     /locus_tag="VD968_03325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13455.1"
                     /translation="MRSSIVSIALALSLCAASAVAVSAKVKSRTLTVGSDFLVGSTLV
                     KKGTYKLAYDDQTGELTVSDKQKNVVARATVRAERRAQGKRGWDVTLAPRGGQLALVS
                     LAFPEDKQTLFVGDATASGSGATQGNGSGSANQK"
     gene            complement(2756..3715)
                     /locus_tag="VD968_03330"
     CDS             complement(2756..3715)
                     /locus_tag="VD968_03330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13456.1"
                     /translation="MPRPRVLLLVSFCALLLTRGAAQAAQPEAGSRDRDLKRAEAVLD
                     KLRLLDSAAGSAPDLRPFRAAADGLYPGILVQVSELPDGALKTDLATAVALYESARRL
                     RADAPAPDCRRELRASYLRLCRESAGGGGRAALLFAKARMHARWAEVALSHRRGDAGA
                     ATLAALDEIRAERRADLILARRALAALKSLAEGFQSPPAVGDDGDAARPLSASTAAPT
                     DAELSAALDGVDLLLASLPRDRAQQLLRNARNHLRDALALRRTALAGTALTVSARALG
                     ARERLDRPGLDAAAAARAYLQNRRGALNFIRRAEEALEETQNQ"
     gene            complement(3865..4164)
                     /locus_tag="VD968_03335"
     CDS             complement(3865..4164)
                     /locus_tag="VD968_03335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13457.1"
                     /translation="MAQAASTLRSPSTPPQPRRPRLRELGIYRLPDGREFVVSTLFHD
                     GCSLYTPHAWATFGLPEYWVDSEGRLLRTGDPTGWRAQDLTDTGKTTDYPKPVLL"
     gene            4426..>5596
                     /locus_tag="VD968_03340"
     CDS             4426..>5596
                     /locus_tag="VD968_03340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13458.1"
                     /translation="MRIRLKHPLLAALALLCLASAARADIKIKSRTSFGGQPGAETTV
                     YIKGKRQRSETAGQMATVMQCDLRRTVQLNGTTKTYMVSPFDDGSAEQPQTAPPAGAR
                     EPSRRGGIVTTTMTMTDTGERKTMFGYTARRIKTSMVTESSPDACDKQKSRMESDGWY
                     IDLAVEFDCYDKAATAGYSYQRPGGCRDEHRFKRVGAARMGYPVQVTTTMYDESGRAT
                     SSFTQEVLEISKAALDAALFDVPADYRLVKDASEMYSASAVMNAAQGGDDDDNDDAAD
                     QASTGGMPVNVAGGASQAQAAEGPKKPGVVRIGLVLPKATAAEGVDSNVLAEAVRNTT
                     ASYLAGPALEIVKLDARPPEQAEAEALKRECDYVLTMTVAHKKGGGGGFGMFKKIA"
BASE COUNT          982 a         1889 c         1924 g          801 t
ORIGIN      
        1 gcacttcgag gcgctcgacc tcggccccga ggtcgggcgg cgcccccttc gccgaccgcg
       61 aagacgttgg gcggctgctc gcgcgcgtcg agttcgtcgc gcgcaccttc cccgaagcga
      121 acctccccga gctgggcgag gaggacgttc tcgccgcgct cgcctcgatg tgcgaaggcc
      181 gccggagctt cgcagagctg cgcgaggcgg cgaggcgcgg cgagctgtta gagcacctgc
      241 gcgcgcgcct cacgccggaa cagtcgcggc tgctggccac gatggcgccc gagcgcgtcg
      301 cgctcgcatc gggccgccaa gcacgcgtcc agtacgagcc gggccagagc ccctacgtcg
      361 cctctcgcct gcaagacttc ttccgcatgc gcgaggcgcc gcgcatagcg gccgggcgcg
      421 cgccgctagt cctgcacctg ctcgcgccca gccagcgccc tgtgcaggtc acttcagacc
      481 tcgccggctt ctggtcacgc cactaccctc gcgtgcgccg cgaactgggc cgccgctacc
      541 cgcgccacgc ctggcctgaa gacccgctca acccctgaac gttccgaatt acaggttcta
      601 agtgaagaat ctgtcttcga cctggagcct gtgactcggg acctgaaact ttcttcgcgg
      661 ccgtgattga aaactgttta gcatgtgtga aagaatgttt gggcattgtt ctatcaatct
      721 taaataaatt tcagccaccc cccgttaaag gaacccgacc gacatgcctg agttacgcgg
      781 caagcaagca accgaagacg ttaaagagga gtggaagcgc gcatacgact actacctacg
      841 cgcccccggc gtcccccaca acaagaagct cgaccgcact gagcgcatca actacgtcgc
      901 cgaccagatg aagttgacgc gcaagcaggc caagcggcgc gtgaagaact acgaggcctg
      961 gcagcgcaac atcaagaagg ggctcgtcac tccctaagag ccgggcggcg cgcgagtctc
     1021 atgcagagtc tttcccacca gccttccgcg gcgaaggggg cgccgcccga cctcggggcc
     1081 gaggtcgagc gcctcgaagt gctcctctcg gagcggcgcg cggagctttc ggccttgcag
     1141 gccgagctgc gcgacttcaa ggtgcgatac gcgcacacgg tcggcgcgcg ccttgccgag
     1201 ctggccgagg tcgaggccga gatacgcaag gcccaggccg gcgcgctcgg gctcgacgag
     1261 gaaggggagg acgaaggcga agaggagcgc gccgcgagct tctacgaaac gcgccccgcg
     1321 ccctcgggcg gcgccgggtt gaaaaggctc ttctggtcgg tggcgcgcat gttccacccc
     1381 gaccacgcct ccgacgagca ggaggcgcgc cgccggcact ccatcatggc cgaggcgtcg
     1441 cgcgcctacc gcgacggcga cgttgacagc ctgcactcgc tcctgggcga cgagcacctg
     1501 caatccttct gcgcctccgc cggccgtgac gaggagccgg aagacctccc cacgcgcctg
     1561 ctcaatttga aagaagagct gcgcaccatc gagttcggca tcaagcgcgc gcgccacgac
     1621 ggcctctacc agctcatgct caaggcgcgc tcggaggccg ccgaggggcg cgacgccctc
     1681 gcctcgatgg ccgagagcat cacccgccag atagcgaagg cgcgacgtcg cctcgaacac
     1741 ttttcttaga ggctaggggc cagttagaag aaagtcttcc actagcctct agcctcttta
     1801 tcaagctatg gaatgtcgtg tcgggtgcgg cgcgtgctgc gtggcgcctt cgataagcac
     1861 gccgataccg gggatgcccg agggtaagcc cgcgggcgtt cgctgcgtgc agctcacgtc
     1921 tgacaaccgc tgcctcctct tcggccgccc cgagcgcccg gccgtctgca ctagcctgcg
     1981 ccccaccgaa gagatgtgcg gcctgtcggc ccgcgaggct tacacgcgcc tcgcgcgcct
     2041 cgaacgccgc acgaagaagt gaacgaagcg gcgaaccgaa gccgcccctc cctccgcccg
     2101 ctcacgtcca ttattcagta cctcccccgg cgcggcccgt gcgccgaaag gcgcgtctcg
     2161 tcacatttct gttcacgccg cgcgcccgct gctttaagtt cgtccgcgac ggccgccgca
     2221 gagcgcggcc cgggcgccca cccgagacga agttcaggcg aagaaggagc acgaaatgag
     2281 aagcagcata gttagcatcg cacttgcgct cagcctgtgc gcggcctcgg ccgtcgcggt
     2341 gtcggcgaag gtaaagagca ggacgctcac cgtcgggtct gacttccttg tcgggagcac
     2401 gctcgtcaag aagggcactt acaagctggc ctacgatgac cagacgggcg agcttacggt
     2461 ctcggacaag cagaagaacg tcgtggcgcg cgcgacggtg cgcgccgagc ggcgcgcgca
     2521 agggaagagg ggctgggacg tgacgctcgc gccccgcggc ggccagctcg cgctcgtgag
     2581 cctcgccttc cccgaagaca agcagaccct cttcgtcggc gacgcgacgg cctccggctc
     2641 gggcgccacg caaggcaacg gctcgggcag cgccaaccag aagtaaaaaa cttcggcgta
     2701 ggcggcggga gaggccgccg cccgcacttt tcgagcgcct cacttaactt cgggcttact
     2761 gattctgagt ctcttcgaga gcctcttcgg cgcgccttat gaagttgagg gcgccgcgcc
     2821 ggttctgtag gtaggcgcgc gcggcagcgg cggcgtcgag gccgggacgg tcgagtcgtt
     2881 cacgcgcgcc gagcgcgcgg gcgctcacgg tcagcgccgt gccggcgagc gccgtgcggc
     2941 gcagagcgag cgcgtcgcga aggtggttgc gcgcgttgcg aagtagttgc tgcgcgcggt
     3001 cgcgcggcag cgaggcgagc agcaggtcaa cgccgtcgag cgcggcggaa agctccgcgt
     3061 cggtcggcgc cgccgtgctc gcggagaggg ggcgggcggc gtcgccgtca tcaccaaccg
     3121 ccggcggcga ctggaagcct tcggcgagcg acttgagggc cgcgagggcg cggcgcgcga
     3181 gaataaggtc tgcgcgccgc tcggcccgta tttcgtcgag ggcggcgagg gtggcggcgc
     3241 ctgcgtcgcc ccgccggtga cttagcgcga cctcggccca acgcgcgtgc atgcgcgcct
     3301 tcgcgaagag gagcgcggcg cggccgccgc cccccgcgct ctcgcggcac aggcggaggt
     3361 aggacgcgcg cagctcgcgc cggcagtcgg gcgccggggc gtccgcgcgc aaacgtcgcg
     3421 ccgactcgta gagcgcgacg gccgtcgcca ggtcggtctt gagcgcgccg tccggaagct
     3481 cggaaacctg tacgagtatg ccggggtata ggccgtcggc agccgcgcga aacggccgca
     3541 gatcgggcgc cgagcccgcg gccgagtcga gaagcctgag cttgtcgagc acggcctccg
     3601 cgcgcttcaa atctctgtcg cgactgcccg cttcgggctg ggcggcctgc gccgcgccgc
     3661 gggtgaggag cagggcgcag aaggagacga gaaggagaac tctcggccgg ggcatgagga
     3721 agtgaaaggc cgaatttccc ggaacttcct caaaccgctt ccggaaaacg gccgcggggc
     3781 agaataacga aaaggctccg gcgcggggct cacccaaatt cgcccccgcg ccggagcctt
     3841 aaatctttgg tgtcaggcgt gccgtcagag gaggacgggc ttcgggtagt cggtcgtctt
     3901 gcccgtgtct gtcaggtctt gggcgcgcca tcccgtgggg tcgcccgtgc gaagcagccg
     3961 gccttcggag tcaacccagt actcggggag cccgaaagtg gcccacgcgt gcggcgtgta
     4021 gaggctgcaa ccgtcgtgga agagcgtgct gacgacgaac tccctgccgt cgggcaggcg
     4081 gtatatgccc agctcgcgaa gcctcggcct gcggggctgt ggcggagtgg atggagagcg
     4141 cagcgtggag gctgcctgag ccatgataga cctccgtttt aaaacgctcg ggcttgggga
     4201 ggccgcgtcg tcgaaatatt taagcgtcgg gcaagttgaa ttgagcgaaa tatagcacag
     4261 attctcgccg ccgttatgta cgaacggcga cgctcgcgcc cgccccccgc ggcagcgggg
     4321 cgaaaaatat tccggccgag gctgattgcc gaccggccgc acttgcgcgt tagaaggtgg
     4381 ggccgcctgc ggccccgctt tccgggaacg agggagccca tacttatgcg aatcagactc
     4441 aagcacccac tcttagcggc actggcgctc ctgtgcctcg cgtcggcggc gcgcgccgac
     4501 atcaagatca agtcgcgcac cagcttcggc ggccagcccg gcgccgagac gaccgtctat
     4561 atcaagggca agcgccaaag gagcgagacg gccggccaga tggcgaccgt catgcagtgc
     4621 gacctgcgcc gcaccgtcca gttgaacggc acgacgaaga cctacatggt ctcgcccttc
     4681 gacgacggct ccgcggagca gccgcagacc gccccgcctg cgggggcgcg cgagccctcg
     4741 cgccgcggcg gcatagtcac caccacgatg acgatgaccg acacgggcga gcgtaaaacc
     4801 atgttcggct acacggcccg gcgcataaag acctcgatgg tcacggagtc ttcgcccgac
     4861 gcctgcgaca agcagaagtc gcgcatggag tccgacggct ggtacataga cctcgccgtc
     4921 gagttcgact gctacgacaa ggccgcgacc gcaggctaca gctaccagcg gccgggcggc
     4981 tgccgcgacg agcaccgctt caagcgcgtg ggcgcggcca ggatgggcta cccagtgcag
     5041 gtcacgacca ccatgtacga cgagtcgggc agggcgactt cgagcttcac gcaggaggtt
     5101 ctggagattt cgaaggccgc gctagacgcg gcgctcttcg acgtgccggc cgactaccgg
     5161 ctcgtgaagg acgcctccga gatgtactcc gcctcggccg tgatgaacgc cgcgcagggc
     5221 ggcgatgatg acgacaacga cgacgctgcc gatcaggctt cgacgggcgg gatgcccgtg
     5281 aacgtcgccg gcggcgcgtc tcaggcgcag gcggccgagg ggccgaagaa gccgggcgtc
     5341 gtccgaatcg ggctcgtgct cccgaaggcg accgcggccg agggggttga ctcgaacgtg
     5401 ctggccgagg ccgtcaggaa cacgaccgcc agttacctcg cggggcccgc gctcgaaatc
     5461 gtcaagctcg acgcacgtcc gcccgagcag gccgaggcgg aagcactgaa gcgcgagtgc
     5521 gactacgtcc tgacgatgac ggtggcgcac aagaagggcg ggggcggcgg cttcggcatg
     5581 ttcaagaaga tagcgc
//
LOCUS       DASPKR010000114         5087 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_659873, whole genome shotgun sequence.
ACCESSION   DASPKR010000114 DASPKR010000000
VERSION     DASPKR010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5087)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659873"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..466
                     /locus_tag="VD968_03345"
     CDS             <1..466
                     /locus_tag="VD968_03345"
                     /inference="COORDINATES: protein motif:HMM:NF014533.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HYE13459.1"
                     /translation="GLSLGVLVVEASEKSGSLITARLALEQGREVYAVPGNITSRNSF
                     GTNYLIKGAGAKLVQAWQDVVSEFPAELAALMLPPEPSEKKKGTGPPLPSDITDGERA
                     VLALIPPDEPAHIDALAEASGLAVQELAGVLLSLELRDLVSQLPGKCFVRKL"
     gene            764..4465
                     /locus_tag="VD968_03350"
     CDS             764..4465
                     /locus_tag="VD968_03350"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13460.1"
                     /translation="MKTRATHGTTPLQRVRDGLARRARAGYALALAVALGLAPALLPA
                     GAEAAPGDLDTTFDADGKQTTNFYGRLDKAYAVAVQTDGKIVVAGDLLNTATGAGDFA
                     LARYNADGSLDATFGGDGRVSTDFGGGAGGDDHAYGVVVQADGKIVAAGAAFNGTTNY
                     DFALARYNTDGSLDTSFSGDGKVMTDIPAAAGPNQSNYGHAVAIQPGGAKIVVAGYTN
                     GGNNGSDDFAVARYNASDGSLDTSFDTDGMRTVNIRATGSNSSWDNAYGVVVEADNQI
                     VMAGHADGSDGSATGQDFALVRLNESGSFDTAVGGNGRRTATFGTGNTTDGGRAIALD
                     GSGNVVVAGWTSAGDNSTYDFAVARYSAAALTLDTAFSGDGKQTVSFDDLANSVLNSA
                     EARGVAFSGNDIIVAGVSAIFSSSSDFAVARLTSNGSLDTSFDSDGKQTVDFFGAADE
                     ANAMALTADGSAVVAGLTNTPAHTKGIDFGVAQISPSGSLDTDFSGDGRQNTDFHTSA
                     EDATALAVQPDGKAVVAGFVLSEQGDYDFAVARYNTDGSLDATFGDDGTVRTNLHPTS
                     AVHDQAYAVAVQPDGRIVVAGHSNFDFALVRYNADGSLDTSFDADGIVTTAASQVSGN
                     DDTARAVLVQPDGRIVVAGYAMAGTSVVHYNFAAARYNSDGLLDANFNPAGAVVDGSA
                     VPGLMRINASSGQQHDQAYALRRQPDGKLVLAGYASLSTQDFAVVRLNSDGSADTTFD
                     SDGIVTRDLGSSTDTAYGVAIQVDGRIVAVGTNNAQDFALARFNPNGSRDNNTGSDST
                     PGDFFGASGAGGGVVTTDFNGSGDEAFAVRVTSGGKLVVAGYAADAVTGFRDFALARY
                     NTDGSLDTNADADPALHFSTDGKLTTDFTGSHDQAAALAMPADGSILVAGTAGAFTGD
                     TDFALARYLRSESDLVLKSDDLSGSVVEGSTGSFDIRVRNAGPSEAHNVTFTATIPAG
                     LTFSSADTTAGSCSELGGTVTCDLGTLADNAEATVTIEAVGSTVGTHTLNTSASSDEF
                     DWIESNNTRPYKVTVVELVSLTLSEATTVGGCGTPTGVVRLSGDAPAGGAVVTLSSNN
                     AAASVPATVTVQGGSTQASFPITPNPVSSGVQATITAALGGDSYNQTLTVRSGRITTF
                     TADDTTPPTNSSATGTVTINCVAPAGGLTIPLASNRPKVASVPSSVVIQAGQSSANFQ
                     ITTGSVVGQAVISATHNGRAMYVRLNVGP"
     gene            4691..4879
                     /locus_tag="VD968_03355"
     CDS             4691..4879
                     /locus_tag="VD968_03355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13461.1"
                     /translation="MLAIIGGLALCLAALFFMYTDAVSRATEALLDRVEVALAKRELR
                     RAPRREGDRVGVTVFTHS"
BASE COUNT          894 a         1817 c         1642 g          734 t
ORIGIN      
        1 cggcctctcg ctcggcgtgc tcgtcgtcga ggcgtccgag aagtctggct cgctcatcac
       61 ggcgcggctc gcgctcgaac agggcaggga agtttacgcc gtgccgggca acatcacgag
      121 ccgcaactca ttcggcacga actacctcat taagggcgcg ggcgcgaagc tggtgcaggc
      181 gtggcaggac gtagtctcgg agttccccgc agagttggcc gcgctgatgc tcccgcccga
      241 gccttccgag aagaagaagg gaaccgggcc gccgctccct tctgacatta ccgacggaga
      301 gcgcgccgtg ctcgccctca tcccacccga cgagcccgcg cacatagacg ctctggccga
      361 agcctcgggg ctagccgtgc aggaactcgc cggcgtgctg cttagccttg agcttcgcga
      421 cctcgtgagc caactgcccg gcaagtgttt tgtaaggaag ttgtgaggcg gctgggaccg
      481 ggcggaaaaa gctggacatc cgtggggggc gcggatagaa tgccggcccg aaataaggcg
      541 aaaggggaat tcggcgcccc gttggcatcc ctcgccgagg cacccgcctt ttcccactcc
      601 aagaaagatt tcacccttac gccataccat atgtgcggcg agagcgccgc cccgcgaacg
      661 gggccgtccg ccgtgcgcca acacctgaca cgcaggccgc acatacacca cccgtagcgc
      721 cgggcttgcc tcaaacagcc atccagcccc caggagagag agcatgaaaa ccagagccac
      781 tcacggaacg accccccttc agagagtccg ggacggcctc gctcgccgcg cgcgcgcggg
      841 ttacgccctc gcgttagccg tggccctcgg cctcgccccg gcgctactgc cggcgggcgc
      901 cgaggcggcg ccgggcgacc tcgacactac gttcgacgcc gacggcaagc agacgaccaa
      961 cttctacggc cgcttggaca aagcctacgc cgtcgccgtc cagactgacg gcaaaatcgt
     1021 cgtggccggg gaccttttaa acaccgctac cggcgcgggg gacttcgcgc tggcgcgcta
     1081 caacgccgac ggctcgctcg acgccacgtt cggcggggac ggccgcgtga gcaccgactt
     1141 cgggggcggg gccgggggcg atgaccacgc ctacggcgtc gtcgtccagg ccgacggtaa
     1201 gatcgtggcc gcgggtgccg ccttcaacgg caccactaac tacgacttcg ccttagcgcg
     1261 ctacaacacc gacggctcgc tcgacacttc tttcagcggc gacggcaagg tcatgaccga
     1321 cataccggcc gccgcgggcc cgaaccagtc caactacggg cacgccgtcg ccatacagcc
     1381 gggcggggcg aagatagtcg tggccggcta tacgaacggc ggcaataacg gcagcgacga
     1441 cttcgccgtg gcgcgctaca acgccagcga cggctcgctc gacacctcat tcgacacgga
     1501 cgggatgagg acggtcaaca taagggcgac gggctccaac agcagttggg acaacgccta
     1561 cggcgtggtc gtcgaggcgg acaaccagat cgtcatggcc gggcacgccg acggcagcga
     1621 cggctccgcc acggggcagg atttcgccct cgtgcgcctg aacgagagcg gctcgttcga
     1681 cacggcggtc ggcggcaacg ggaggaggac ggccaccttc ggcaccggca acaccaccga
     1741 cgggggccgg gccatcgccc tcgacggaag cggcaacgtc gtcgtcgccg gctggacttc
     1801 cgcgggcgac aacagcactt acgacttcgc cgtggcgcgc tacagcgccg ccgccctcac
     1861 gctcgacacc gccttcagcg gcgacggcaa gcagaccgtg agcttcgacg acctcgccaa
     1921 ctccgtcctc aacagcgccg aggcgcgcgg cgtcgccttc tccggcaacg acatcatcgt
     1981 cgcgggcgta tccgccatct tcagcagcag cagcgacttc gccgtggcgc ggttgacctc
     2041 gaacggcagc ctcgacacct ccttcgactc cgacggcaag cagaccgttg acttcttcgg
     2101 cgccgcggac gaggcgaacg ccatggcctt gacggcggac ggcagcgccg tcgtcgccgg
     2161 cctgaccaac acgcccgcgc acacgaaggg cattgacttc ggcgtggcgc agataagccc
     2221 gagcggctcg ctagacacgg acttcagcgg cgacggcagg cagaacacag acttccacac
     2281 cagcgcggag gatgcgactg ctctcgccgt gcagccggat ggcaaggcgg tcgtcgccgg
     2341 gttcgtcctg agcgagcagg gcgactacga cttcgccgtg gcccgctaca acacggacgg
     2401 ctcactggac gcaaccttcg gggacgacgg gacggtcagg acgaaccttc acccgacctc
     2461 tgccgtccac gatcaggcct acgccgtcgc cgtacagccg gacggccgta tagtcgtcgc
     2521 cggccactcc aacttcgact tcgcgctagt gcgctacaac gcggacggct cgctcgacac
     2581 ttcgttcgac gccgacggca tagtgacgac cgcggcctcg caggtgtccg gtaacgacga
     2641 cacggcgcgg gccgtgctcg tccagccgga cggccgtata gtcgtcgccg gctacgccat
     2701 ggccggcacc tccgtcgtcc actacaactt cgcagccgcc cgctacaact cggacggctt
     2761 gctcgacgct aacttcaacc cggccggcgc cgtcgttgac ggcagcgccg tccccggcct
     2821 gatgagaatt aacgcctcca gcggccagca gcacgaccag gcctacgccc tccgccgcca
     2881 gccggacggc aagctcgtcc tcgccggcta cgcctcgctc tcgacgcagg acttcgccgt
     2941 cgtccggctc aactccgacg gcagcgccga cacgaccttc gactccgacg gcatcgtgac
     3001 gagggacttg ggcagctcga cggacaccgc ctacggggtc gccatccagg tggacggccg
     3061 catagtcgcc gtcggcacga acaacgcgca ggacttcgca ctcgcgcgct tcaacccgaa
     3121 cggtagccgc gacaacaaca ccggcagcga ctcgacgccc ggcgacttct tcggcgcgag
     3181 cggcgcgggc ggcggcgtcg tgaccacgga cttcaacggc tcaggcgacg aggcgttcgc
     3241 cgtccgcgtc acgtcgggcg gcaagctggt cgtggccggc tacgccgccg acgccgtgac
     3301 gggcttcagg gacttcgcgc tggcgcgcta caacacggac ggctcgctcg acacgaacgc
     3361 cgacgcggac cccgccctcc acttcagcac cgacgggaaa cttacgaccg acttcaccgg
     3421 ctcacacgac caggccgcgg cgctcgccat gcccgccgac ggctctatcc tcgtcgccgg
     3481 cacggccggg gcctttaccg gcgacacgga cttcgcgctc gcccgctacc tgcgctccga
     3541 gtccgacctc gtgctcaagt ctgacgacct gtcgggctcc gtagtagagg gcagcaccgg
     3601 ctccttcgac ataagggttc gcaacgccgg cccgtccgag gcgcacaacg tcaccttcac
     3661 cgccaccatc ccggcggggc tcaccttctc ctcggccgac acgacggccg gctcctgctc
     3721 cgagctgggc ggcaccgtca cctgcgacct cggcacgctg gccgacaacg ccgaggccac
     3781 cgtcaccatc gaggccgtcg gctccacggt cggcacccac accctgaaca cctcggcatc
     3841 gtccgacgag ttcgactgga tcgagtcgaa caacacgcgg ccctacaagg tgaccgtggt
     3901 cgagctggtc tcgctaacgc tctcggaggc gacgaccgtg ggcggctgcg gcacgccgac
     3961 aggggtcgtg cgcctgagcg gcgacgcgcc cgcgggcggg gccgtcgtca cgctctcaag
     4021 caacaacgcg gccgcgagcg tccccgcgac cgtcaccgtg cagggcggct cgacgcaggc
     4081 gagcttcccc atcacgccca accccgtgag ctccggggtg caggccacca tcacggccgc
     4141 gctcggcggc gactcgtaca accagacgct caccgtcagg tcggggcgca taacgacgtt
     4201 cacggcggac gacaccaccc cgccgacgaa ctcgtccgcc accggcaccg tgacgatcaa
     4261 ctgcgtggcg ccggccggcg gcctcaccat cccgctggcg tcgaaccggc cgaaggtcgc
     4321 atcggtgcct tcgtcggtcg tgatacaggc gggacagtcg agcgccaact tccagatcac
     4381 gaccggcagc gtcgtagggc aggcggtgat ctcggccacg cacaacggcc gcgccatgta
     4441 tgtgaggctc aacgtcggcc cgtaaagccg tccgggggcg ggcgcggaga ggcccggcgg
     4501 gggaatcacc cccgccgggc ctcttcgtgt tacgggcgga taaaaggctc tccgatgtga
     4561 ttctttccgg gcgcggttcc cgcgttattt cgtgagggcg gctacatgct gacagaagcg
     4621 gccgccgggg agattgaaac aatattcagt cggtttttgg ggggcggtca tggaatacac
     4681 gacgggtcaa atgctggcaa taataggcgg gttggcgctc tgtcttgcgg cgcttttctt
     4741 catgtacacg gacgcggtct cgcgcgcgac cgaggcgctg ctcgaccgcg tcgaggtagc
     4801 tctcgcaaag cgcgagcttc ggcgcgcccc gcggcgcgag ggcgaccggg tgggcgtcac
     4861 cgtattcacg cactcataag acgggcgaag ggaatcgagg ggggctcttg ggaagggtca
     4921 cggctttgag aaggggtttt cgcgcggcgt ccggggcggg cgccgcgcct tttttatggg
     4981 cgaaaaaaaa ttcctgccgg gtgattcaat ccgcgcggct tttgcgcgtt aacctgtgta
     5041 aggggatgcg cgggacggca taacttcatt cctcttaacc cttacac
//
LOCUS       DASPKR010000115         4258 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1307418, whole genome shotgun sequence.
ACCESSION   DASPKR010000115 DASPKR010000000
VERSION     DASPKR010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4258)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4258
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1307418"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VD968_03360"
     CDS             <1..207
                     /locus_tag="VD968_03360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13462.1"
                     /translation="PVENFLRESLERAAEQKSEYDVALLFSTHGGLELEEAARSLGGR
                     VVFREERKGQWVAVVEGEGRPPSP"
     gene            564..1760
                     /locus_tag="VD968_03365"
     CDS             564..1760
                     /locus_tag="VD968_03365"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HYE13463.1"
                     /translation="MRKEISKRHWKTCAAVCALALLSASSPGTRGDDRPVKGRTLLDV
                     ARQASVIVLGHVESVSTDGAGVQRAVVSVKRAFRGQPGSTVTVLGSVRNPDEARFNPN
                     RSVLLFLAPTRAAGVYQCVKGDAGKYSVFPGEEGRVAELAEEYAKYSAGREPTAAARE
                     GHRRVVRNFIAAPLRDRHFTAGLLEEFDAGVSAADLDWLKERARDEKADPTVRAWAAR
                     HLGRLRAKGEAPTLLNLVSSPEPLVRGGAVWALGALGAVEHEGVILKALDDPSPGVRQ
                     TAVEVLGKLKSPNSVGALMRRLEQEPSTLVRAAIVTSVGNIPGEEARRAVERLGGPSV
                     GARLRRVTRGGERAEEPGSGESPEARPTRFGPEPRPTAAPSDDPPRNPRQRPGVKSDD
                     PAREEN"
     gene            1762..3447
                     /locus_tag="VD968_03370"
     CDS             1762..3447
                     /locus_tag="VD968_03370"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HYE13464.1"
                     /translation="MRHTRLSARRTFLAICFALGLCAAEARADHTVYLDFTTRGFDLS
                     EYGINDAYTVEAVKSLIRELMHADYASYEVNFVTFQPPNGRYTRVIFGGYDMRSGSSS
                     YGTVSADASDQGFTGTGLGSWQQDESVAFVFSDQFSTEVEWQGWDATAPRISNAIAGT
                     ASHELGHILSLCHENAYDDGPACGDTGTDPDVNEHIMATGLTGLQSDDRATADRFFSY
                     HVSSNILLEAVQTRCFHTAMGSLNNSDARADLLYGRFQSPTEVRWYGRKSSGTAFGDY
                     TTWVTDGGDADDIFLAGDVDNDKDADLVYGRVFSATKVTWYVRKSDGTKFGDYATWAT
                     DAGDAGDIFRLADVNADGRADLVYGRVFSSTQVTWYVRKSNGSSFGDYETWVTDGGDE
                     GNIFFVADVNNNKRADLVYGYIFSPTQVTWYVRKSSGSSFGGYETWVTDGGDEGDRFL
                     VADLDADGDADLAYGRKDGADFSDQSVVIWYARKSDGTKFGDYTTWSSDAGDAGDTFR
                     IADLTGDKRADLLYGRKINFDTVKWYARNSSGSGFGGYTIWADNASDEGDLIP"
     gene            3588..>4258
                     /locus_tag="VD968_03375"
     CDS             3588..>4258
                     /locus_tag="VD968_03375"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE13465.1"
                     /translation="MPYEIFLALKYLRVRRGRRVAGWTAVAAVVGIACGVAALVFALT
                     LARGFRGELRDKILRGTAHVTVARAGGGSGVGEARSVAARLRGVEGVASAAPTSYGGA
                     LLSGPAGAAYAVLRGVDSVGGRAPEQPRRTVTAGSADALFASPPGAGGEQPANVLLGE
                     ELAERTGLVAVGAEGWLLTGEPRGGAEGFAARSRRVRVAGLFRTGLFEYDSAWAYLSL
                     EEAGRA"
BASE COUNT          695 a         1517 c         1461 g          585 t
ORIGIN      
        1 ccggtcgaga acttcctgcg agaatcactt gagcgagccg ccgaacagaa atccgagtac
       61 gacgtggcgc tcctcttctc cacgcacggc gggcttgagc ttgaagaggc cgcgcgctcg
      121 ctcggtggtc gcgtcgtctt ccgagaagaa aggaaggggc agtgggtcgc cgtcgtggag
      181 ggcgaggggc gaccgccgtc gccgtgaaaa accgcttgcc cgccccgccc ccggtgttat
      241 aatccgcgcc gttacgcgct tctgaccccg cgggcggccc cggccgcgga aacttcggcc
      301 acgggccgcc gacgaacacc tcctagagac tcaaaccagc gcccgacaac cccgaggaac
      361 aaacggcctt cgacgcctgc ttcaccgggc gccgcagccc cggcatcacg gccggccaaa
      421 acatgcccga gcccgaaacg gctcgccttt cctgaacggt tgccttaccg agccgagtca
      481 atcctcgcga ctcgcccgaa agacacctcc acacaaaccg ggccgggtca acgcccggcc
      541 cgcctcagag aggagtaacc aacgtgcgaa aagaaataag taaacgacac tggaagacgt
      601 gcgccgctgt ctgcgccctc gccctcctgt cggcgagctc gccgggaacg aggggcgacg
      661 acaggccggt caaaggccga acccttctgg acgtggcacg ccaggcgagc gtcatcgtcc
      721 tcgggcatgt cgagagcgtc tcgaccgacg gggcgggcgt gcagcgggcc gtcgtcagcg
      781 tgaagcgagc cttccgcggg cagccgggca gcaccgtcac cgtgctcggc tccgtccgca
      841 accccgacga ggcccgcttc aacccgaatc ggagcgtcct gctcttcctc gccccgacgc
      901 gcgccgccgg cgtctatcag tgcgtgaagg gcgatgccgg caagtacagc gtcttccccg
      961 gcgaggaggg gcgcgtcgcg gaactggccg aggagtacgc gaagtactcc gccggccgcg
     1021 agcccacggc cgcggcgcgc gagggccacc gccgggtcgt gcgcaacttc atcgccgcgc
     1081 cgctgcgcga ccgccacttc acggcgggcc tgctcgaaga gttcgacgcg ggcgtcagcg
     1141 ccgccgacct cgactggctg aaggagcgcg cgcgcgacga gaaggccgac ccgactgtgc
     1201 gcgcctgggc cgcgcgccac ttgggccgcc tgcgcgcgaa gggcgaggcg ccgacgctct
     1261 tgaatttggt ctcgtcgccg gagccgctcg tgcgcggcgg cgccgtctgg gcgctcggcg
     1321 cgttgggcgc cgtcgagcac gagggcgtca tcctgaaggc gctcgacgac ccctcgcccg
     1381 gcgtgcggca gaccgccgtt gaggtgctcg gcaaactcaa gtcgccgaac tcggtgggcg
     1441 cgctgatgag gcggctcgaa caggagccga gcacgctcgt ccgcgccgcc atcgtgacca
     1501 gcgtcgggaa catccccggc gaggaggccc gccgcgccgt cgagaggctg ggcggcccct
     1561 ccgtgggcgc gcgcctcagg cgcgtcacgc gcggcggcga aagggccgag gagccgggct
     1621 ccggggagtc gccggaggcc aggccgacgc gcttcggccc cgagccgagg ccgacggccg
     1681 ccccgtcgga cgacccccct aggaacccca gacagaggcc gggcgtcaag tctgacgacc
     1741 ccgccaggga ggagaactga catgcgccac acccgattat cggcacgccg aacattcctc
     1801 gcgatctgct tcgcgctcgg cctctgcgcg gccgaggcgc gggccgacca caccgtctat
     1861 ctcgacttca ccaccagagg cttcgacctc tccgagtacg gcatcaacga cgcctacacg
     1921 gtcgaggcgg tcaagtccct gatacgcgag ctgatgcacg ccgactacgc cagctacgag
     1981 gtgaacttcg tcaccttcca gccgcccaac ggcaggtaca cgcgcgtcat cttcggcggc
     2041 tacgacatgc gctccggctc gagctcctac ggcacggtca gcgccgacgc gagcgaccag
     2101 ggcttcacgg gcacgggcct gggctcctgg cagcaggacg agtcggtggc cttcgtcttc
     2161 tccgaccagt tcagcaccga ggtcgagtgg cagggctggg acgccaccgc cccccgcatc
     2221 tccaacgcca tcgccggcac cgccagccac gaactcggcc acatcctcag cctctgccac
     2281 gagaacgcct acgacgacgg ccccgcgtgc ggcgacacgg gaactgaccc ggacgtgaac
     2341 gagcacatca tggcgaccgg cctcaccggg ttacagtcgg acgaccgcgc cacggctgac
     2401 cgcttcttca gctaccacgt gagcagcaac atcctgctag aagccgtcca gacgcgctgc
     2461 ttccatacgg cgatggggtc gctcaacaac tccgacgcgc gggccgacct cctctacggc
     2521 cgcttccaat cgcccaccga ggtcagatgg tacgggcgca agtcgagcgg cacggccttc
     2581 ggcgactaca cgacgtgggt cacggacggc ggcgacgccg acgacatctt cctcgcaggc
     2641 gacgtggaca acgacaagga cgcggatctc gtgtacggcc gcgtcttcag cgccacgaag
     2701 gtcacatggt acgtgcgtaa gtccgacggg acgaaattcg gcgactacgc gacgtgggcc
     2761 accgacgcgg gcgacgccgg cgacatcttc cggctggccg acgttaacgc cgacggcagg
     2821 gccgacctcg tctatggccg cgtcttcagt tcgacgcagg tgacttggta cgtgcgcaag
     2881 tccaacggca gttccttcgg cgactacgag acgtgggtca cggacggcgg cgacgagggc
     2941 aacatcttct ttgtcgccga cgttaacaac aacaagcggg ctgacctcgt ctatgggtac
     3001 atattttcgc ccactcaggt cacctggtac gtgcgcaagt ctagcggcag ctccttcggc
     3061 ggctacgaga cgtgggtcac tgatggcggc gacgagggcg accgcttcct cgtcgcggat
     3121 ctagacgccg acggcgacgc cgacctcgcc tacgggcgca aggacggcgc cgacttctcc
     3181 gaccagtcgg tcgtcatctg gtacgcgcgc aagtccgacg ggacgaaatt cggcgactac
     3241 acgacgtggt cgagcgacgc gggcgacgcg ggcgacacct tccgcatcgc cgacctgacg
     3301 ggcgacaagc gggccgacct gctctacggg cggaagataa acttcgacac ggtgaaatgg
     3361 tacgcgcgca actccagcgg cagcggcttc ggcggctata ccatctgggc cgacaacgcg
     3421 agcgacgaag gcgacctcat cccctgacga cggcccgaga aacgggttgc cccggcgcgc
     3481 cgcgacgggg cttaatccag cgggcggcgg cgtgcgcaac acgccgccgc ccgccgtctt
     3541 gagttcaaaa tccccgcccc ttcctgcata ctgccccctg ttcccttatg ccttacgaga
     3601 tattccttgc gctgaagtac ctgcgcgtgc ggagggggcg gcgcgtggcc gggtggactg
     3661 cggtcgcggc cgtcgtcggc atcgcgtgcg gggtcgcggc gctcgtcttc gcgctgacgc
     3721 tggcgcgcgg cttccgcggg gagctgcgcg acaagattct gcgcggcacg gcgcacgtga
     3781 cggtggcgcg cgccgggggc ggctccggcg taggcgaggc gcgctcggtg gccgcgcggc
     3841 tgcgcggcgt cgagggtgtc gcctccgccg cgccgacaag ctacggcgga gcgctgctga
     3901 gcggccccgc gggcgccgcc tacgccgtgc ttcggggcgt tgactcggtc ggtgggcgag
     3961 cgcccgagca gccgcgccgc acagtcacgg ccgggtctgc ggacgccctc ttcgcgagcc
     4021 cgccgggcgc gggcggcgag cagccggcga acgttcttct aggcgaggag cttgccgagc
     4081 gcacagggct tgtcgcggta ggcgccgaag ggtggctcct gacgggcgag ccgcgcggcg
     4141 gcgccgaagg gttcgcggcg cggtcgcggc gcgtgcgcgt cgcggggctc ttccgcacgg
     4201 gcctgttcga gtacgactcg gcgtgggctt acctctcgct cgaagaggcc gggcgcgc
//
LOCUS       DASPKR010000116         3095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1048494, whole genome shotgun sequence.
ACCESSION   DASPKR010000116 DASPKR010000000
VERSION     DASPKR010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3095)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3095
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1048494"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..593
                     /locus_tag="VD968_03380"
     CDS             <1..593
                     /locus_tag="VD968_03380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13466.1"
                     /translation="DGGGSGGAPSAASHDAAQLSQPKLSTARIRQVKVYGRLGESLNL
                     YDDLVRGRTVTFNFITAPCAAPCEQAAVFRETRRRMGERLGPYVKLITVVAGADWKAG
                     LQRMAAEYGAGDEWTFVAVDDGKLTGLLDALGVPTAARAASPPPLVVYNDSTGYSMHL
                     GGASPVTLLIKSIDDASSKDPVVPGVDDVTRLPPRL"
     gene            646..876
                     /locus_tag="VD968_03385"
     CDS             646..876
                     /locus_tag="VD968_03385"
                     /inference="COORDINATES: protein motif:HMM:NF016165.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin receptor-like dimerization
                     domain-containing protein"
                     /protein_id="HYE13467.1"
                     /translation="MTRDEGLPRRPWFKHHVYAPGFYTGYGVKTLPGVREAIEQHDWR
                     EADGQIVIAARAIESVAAEIERAAALLAPAAR"
     gene            995..>3095
                     /locus_tag="VD968_03390"
     CDS             995..>3095
                     /locus_tag="VD968_03390"
                     /inference="COORDINATES: protein motif:HMM:NF015714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HYE13468.1"
                     /translation="MPFASGVLLSALAAPPLAACLAACAAATAFALLSLKRKRLPAAT
                     RSIVFAFACAGAALGVIEARPGASGVRAFYESGKLRSGDPVELTGVMERAPEEAPDGL
                     ALSLRVESLRHGAREERATGRVELFATVEGERARKLYESLELRRGARLRVMTALRRAE
                     RFRNPGVATVAERLDRRGVSASGSVKSPLLVERLDDEPVFLPLVWLDDWRARLVRAAD
                     ETFSPPTAGVFKAAFLGNRRGLTRETAGAFREGGTFHVLVISGLHITFLGGLAWWAAR
                     RLTRRRLLQWAASVACVWLYSVGVGAETSVVRAALMFTAAALAPALGRRSASLNALGG
                     AALALLAWRPSSLFDPSFQLTFLSALAIVALALPLLSNMKAAGEWRPSRAAPRPPEAP
                     AWLLALSEALYWRERRWRREMARSTHSYKLFKSRWAARLGRFGAQAPLRFAFAALVVT
                     ASVQLALLPLSVLYFHRLALASLALNAYTGALMALLAASSCAALALSAASAQLASPFV
                     WTAETATRMMAGGVKPFASAGVAGLRLPEYSGAAAAVYALYFVPLIVIARALLNWRPV
                     GDGPPIKNERPRRARALKLASVALVIMLVVIIAHPSSAGGSGGRLRVDFLDVGQGDAA
                     LITTPDGTTLLVDGGGRPRFAGDDDGEAFEPDVRGVGDSVVSEYLWWRGLSRVNYLFA
                     THADADHAEGLGDVARNF"
BASE COUNT          403 a         1127 c         1052 g          513 t
ORIGIN      
        1 gagacggtgg cggcagcggc ggcgcgccgt ccgccgcgtc acacgacgcg gctcagctca
       61 gccagccgaa gctttcgacg gcgcggatca gacaagtcaa ggtgtacgga cggctaggcg
      121 agagtctcaa cctgtacgac gatctcgtcc gcgggaggac cgtcaccttt aactttatca
      181 ccgccccgtg cgccgccccg tgcgagcagg ctgccgtctt ccgcgaaacc cgtcggagga
      241 tgggcgagcg gctggggcct tacgtcaaac tgattaccgt cgtcgcgggg gccgactgga
      301 aggcggggct gcaacggatg gccgccgagt acggcgcggg cgacgagtgg acgtttgtcg
      361 ccgtggacga tggcaagttg acggggctgc tcgacgcact tggcgttccg accgcggccc
      421 gtgccgcgtc cccgccgccg ctcgtcgtat acaacgacag caccggctac tcgatgcacc
      481 tcgggggcgc gagccccgtc acgctgctca ttaaatccat tgacgacgcc tcgtcgaaag
      541 atcctgtggt gccgggggtg gatgacgtga cccgcctgcc gccccgcctc tgaaacggta
      601 agcccacatc taacaggggg acagtcacat catctgacgt cggcgatgac gcgcgacgag
      661 ggcctgccgc gccggccctg gttcaagcac cacgtctacg cgcccggctt ctacaccggc
      721 tacggcgtga agaccctgcc cggcgtgcgc gaggccatag agcagcacga ctggcgcgag
      781 gccgacgggc agatagtcat agccgcccgc gcgatcgaat cggtcgccgc cgagatagag
      841 cgcgccgccg ctctcctcgc cccggccgcg cgctgagccg cggcgggagt cttgtaagaa
      901 ggggcgggcg gtgctaaagt ccgccccgcc gtaaatgaac gagccggctc ctcaaagccc
      961 ttcgttcgcc tccttcccac tccttgctac gggtgtgcct ttcgcttcgg gcgtgctgct
     1021 ctctgcgctc gccgcgcccc ctctcgccgc ctgcctcgcg gcctgcgccg ccgcgaccgc
     1081 cttcgcgctc ctgagcctga agaggaaaag actgcctgcc gcgacgcgct caattgtctt
     1141 tgccttcgcg tgcgccggcg cggcgctggg cgtcatagag gcgaggccgg gcgcttcggg
     1201 cgtgcgcgcc ttctacgaga gcgggaagct tcggtcgggc gaccctgttg agctgacggg
     1261 cgtgatggag cgcgcgcccg aggaggcgcc cgacggcctc gcgctctcgc ttcgcgtgga
     1321 gagtttgagg cacggcgcgc gtgaagagag ggcgaccggg cgcgtcgagc ttttcgcaac
     1381 tgtcgagggc gagcgggcgc gcaagctcta cgagtcgctt gagcttcgca ggggagcgcg
     1441 cctgcgggtg atgacggcgc tccgccgcgc ggagaggttc cgaaaccccg gcgtcgccac
     1501 tgtcgccgag cgcctcgacc gccgcggcgt ctcggccagc gggtctgtca agagccctct
     1561 tctcgtcgag cgcctcgacg acgagccggt gtttttgccc ctcgtctggc tggacgactg
     1621 gcgcgcgcga ctcgtcaggg ccgctgacga gacgttctcg cctccgactg cgggcgtctt
     1681 taaagccgcc ttcctcggca accgtcgcgg cctcacccgc gagacggccg gagccttccg
     1741 cgagggcggc accttccacg tgctcgtcat aagcggcctg cacataacct tcctcggcgg
     1801 cctggcgtgg tgggccgcgc gccggctcac caggcgcagg ctccttcagt gggccgcctc
     1861 ggtcgcgtgc gtgtggctct actccgtagg cgtcggcgcg gagacttccg tcgtgcgcgc
     1921 ggcgctgatg ttcacggccg ccgcgctcgc gcccgcgttg ggcaggcgct cggcgtcgct
     1981 caacgctttg ggcggcgccg cgctcgcgct cctggcctgg cgcccgtcga gcctcttcga
     2041 cccgtcgttc cagctcacgt tcctctccgc gctcgcaatc gtcgcgctcg ccctgccgct
     2101 gctctcgaac atgaaggcgg cgggagagtg gcggccgtcg cgcgcggcgc cgcgcccgcc
     2161 cgaagccccc gcgtggctgc tcgcgctctc cgaggctctc tactggcggg agcgccgctg
     2221 gcgccgcgag atggcgcgct cgacgcacag ctacaaacta ttcaagtcgc ggtgggccgc
     2281 gcggctcgga cgcttcggcg cgcaggcgcc gctccgattc gccttcgccg ctttggtagt
     2341 cacggcttcg gtgcagctcg cgttgctccc gctctcagtc ctctacttcc accgcctcgc
     2401 gctcgcctcg ctcgcgctca acgcctacac gggcgcgctc atggcgctgc tcgccgcctc
     2461 ttcgtgcgcc gcgctcgcgc tctcggccgc gagcgcgcag ctcgcctcac ccttcgtgtg
     2521 gacggccgag accgcgacgc gcatgatggc cgggggcgtc aagccgttcg catccgcagg
     2581 cgtcgctggc ctgcgactgc ccgagtactc cggcgcggcc gcggccgtct atgccctcta
     2641 cttcgtgccg ctcatcgtca tcgcacgcgc cctgctcaac tggcggcccg tgggagacgg
     2701 cccgcctatc aagaacgaaa gaccgaggcg cgctcgcgct ctcaagctcg cttcggtcgc
     2761 cctcgtcatc atgctcgtcg tgatcatcgc gcacccttcg agcgcgggcg ggagcggcgg
     2821 caggctgcgc gttgacttcc tcgacgtggg acagggcgac gccgcgctga ttacgacgcc
     2881 cgatggcacg actctgctcg ttgacggcgg gggccgcccg cgcttcgcag gcgatgatga
     2941 cggcgaggca ttcgagcccg acgtgcgcgg cgtaggcgat agcgtcgtct ccgagtatct
     3001 ctggtggcgc ggcctctcgc gcgtcaacta cctcttcgcc acgcacgccg acgccgacca
     3061 cgccgaaggg ctcggcgacg ttgcgcgcaa cttcg
//
LOCUS       DASPKR010000117         6394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1437441, whole genome shotgun sequence.
ACCESSION   DASPKR010000117 DASPKR010000000
VERSION     DASPKR010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6394)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6394
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1437441"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..444)
                     /locus_tag="VD968_03395"
     CDS             complement(<1..444)
                     /locus_tag="VD968_03395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13469.1"
                     /translation="MNRTPVLFLNVLIIATCGLVYELLAGTLASYVLGDSVTQFSLII
                     GIYLFSMGVGAWLSRFLERDLARRFVDVEIAVAVLGGLSAPLLFLTFAHLSYFQLVLY
                     STVFLIGALVGLEIPLLMRILKDHLDFKELVARVLAFDYVGALVAS"
     gene            complement(567..845)
                     /locus_tag="VD968_03400"
     CDS             complement(567..845)
                     /locus_tag="VD968_03400"
                     /inference="COORDINATES: protein motif:HMM:NF015927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF350 domain-containing protein"
                     /protein_id="HYE13470.1"
                     /translation="MLTRLLIAQANTSATPIARGMSPTELGYVLLSTAIFTLFGLIVF
                     AIAYAIIVKAAPFSVRKELEEDHNIALAIVIGSIILGIALIIAAAIQG"
     gene            complement(845..1030)
                     /locus_tag="VD968_03405"
     CDS             complement(845..1030)
                     /locus_tag="VD968_03405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13471.1"
                     /translation="MLSKLYLLLGGGLLLLYVGATWMGWEMSLAPRQQLPADVRNTPG
                     GYRTYIYPWHSGFRGGK"
     gene            complement(1130..3166)
                     /locus_tag="VD968_03410"
     CDS             complement(1130..3166)
                     /locus_tag="VD968_03410"
                     /inference="COORDINATES: protein motif:HMM:NF025158.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4178 domain-containing protein"
                     /protein_id="HYE13472.1"
                     /translation="MAYRANCPACGADVTFKAGSSVVVVCEFCHSVVARTDRGVEDIG
                     KVADVVESGSPLEVGLRGVWQNVAFELTGRAQLQHAAGGIWDEWYAAFADGRWGWLAE
                     AQGRFLLTFEIQVPEPRALPFYDQLQLGQPVAAIPSQPPPVVAEKGSATMAGAEGEIP
                     YLLRPGETYFYADLSGQDGVFGTLDYGSHPPSVFVGREVTLEQLGLAHATRTREREAR
                     KVTASKLGCPNCGGPLELRAPDRTERVACPNCGSLLDVNQGEFRYLKTLEPKGWGMSL
                     PLGAVAEWGGAQFTLIGFMVRSVEFEGVRYYWQEYLLYNPAAGFRWLVESDGHWSFVE
                     PVAPGEITETNGAVFRGKRFKIFQDATARCEYVQGEMYWKVTVGERARATDYVRPPLM
                     LSKEVSVSSGGKAKTESEEVNWSLGTYVPVKEIERKYNVNLPRPSKVAPNQPFRHKAV
                     YAYWALLMFVALLAGVANLVTAPRRLVFSDSYRLQPTPTPTPTPAAATNPRDTVTARL
                     PPVPPSPRIPPGEGTQVIFTDAFELDGRRNVRVSGTANVENNWLYVAGDLINEETGLV
                     QQFHLPIEYYSGVEGGEAWSEGGKNETAFLSSLPAGRYTMRLEAQWENWNQAVPPQLT
                     VRVEQGVPRVVNLVLLLVALSVVPVLIAWWHFSFERRRWADSSFNPYDSEESDE"
     gene            complement(3166..3546)
                     /locus_tag="VD968_03415"
     CDS             complement(3166..3546)
                     /locus_tag="VD968_03415"
                     /inference="COORDINATES: protein motif:HMM:NF014705.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosylmethionine decarboxylase"
                     /protein_id="HYE13473.1"
                     /translation="MLTVGTEWLVEASGCDAEALRDVERLRALFSRAVEELSLRVVGE
                     PVWHKFPGAGGVTGLALLSESHLACHTYPEFGFATFNLYCCRERPRWPWDERLRELIG
                     ARAVSVRRFSRQLPEAEAARGGAG"
     gene            3741..4766
                     /locus_tag="VD968_03420"
     CDS             3741..4766
                     /locus_tag="VD968_03420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13474.1"
                     /translation="MPEAFRAAPALLLIVALLAPPAAAQKDEGRRAALRRAFIEAFGE
                     HLEIASDELTRRSAWHGAGLYWLVHAMPKRAGYFRLKYRYRNVDHVNPKDPTHEFVER
                     TMGFRVGERGCPRRPRHAHVCVGDTLILPFVAGDSRNDFAEHVFTLDAYHPPSNDDAE
                     TYERPHDEKTFSSEPVNNPAGAFLKYVGRHSSYSPHRALGYTMEFYATFEAVAPGRFN
                     LLLAASPPPEGAAPAARLAGSVPVIVVERGAPITALVPRASVRGYSQRFESTWGEGYP
                     VTPLILQPGERVTLPYHAFSVRGRDPGPGERAKDPAPFITLLPFHVDPAQGFNEWVVG
                     RPPVKKQ"
     gene            4909..6147
                     /locus_tag="VD968_03425"
     CDS             4909..6147
                     /locus_tag="VD968_03425"
                     /inference="COORDINATES: protein motif:HMM:NF015413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HYE13475.1"
                     /translation="MLYLSQLLGRPIRDMEGERVATIKDVIVRLGEDHPPVTGVVARY
                     RRRDFFMPRARIEKLDEQGVRLSSDVLDLRPFARRDGEVLLAKDVLDKQLIDVDGKRV
                     VRVNDVQLIGVGGEWRVTGADVSLQGLWRRLTPHNFIGTNRPVEVIDWADVGYLATDA
                     ATVQLKSSRDKLARLHPVEIARLAEALSYHQGAEVVEALDDETAAETLEEMSEEDQAR
                     IIGDMDEERAADILEWMSPDEAADVLGDLPEEKAEDLLERMESEEKADVAELLPYEDD
                     EAGGLMTTEFVAVPKNLTVGEAIARLREMAETPNMIYYLYVVEEEGSWRICGVIALRS
                     LILADPDAPLSEVMRTEFQYARPTDSAREVAETIAEYNLLALPVVDDMGDIAGIVTVD
                     DAMELLLPKGWRQRIPKVFS"
     gene            6185..>6394
                     /locus_tag="VD968_03430"
     CDS             6185..>6394
                     /locus_tag="VD968_03430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13476.1"
                     /translation="MYDLFAANTPPLWAWLAGGPPALAWSYLCLRLAAYLKCEKGLRT
                     GYTRKTYHVLIFMTAVAAQAVWGLPG"
BASE COUNT         1118 a         2167 c         2117 g          992 t
ORIGIN      
        1 cgaggcgacg agcgcgccga cgtagtcgaa ggcgaggacg cgcgcgacca actccttaaa
       61 atcgaggtgg tctttgagta tccgcatcag gagcgggatt tcgagcccga cgagcgcgcc
      121 gatcagaaag accgtggagt agaggacgag ctggaagtag ctcaggtgcg cgaaggtgag
      181 gaacagtagc ggcgcggaga ggccgccgag gacggcgacg gctatctcca cgtccacgaa
      241 gcgccgcgcc aagtccctct caaggaatcg cgacaaccac gcgcccacgc ccatcgagaa
      301 gaggtatatg cctatgatga gcgagaactg cgtgaccgag tcgcccaaaa cgtatgaggc
      361 gagcgtcccc gccagcagct catagacgag cccgcacgtg gcgatgataa ggacgttgag
      421 gaagaggacg ggcgtgcggt tcataaagca gtagccagta gccggtagcc agtggaggaa
      481 tcttcgtctt cggagcggtc agagttacag cgcgggcgcc cgcctcgcgg agcctaccga
      541 ccactgccta ctgactaccg gctacttcac ccctgtatcg ccgccgcgat gatgagcgcg
      601 atgccgagga tgatggagcc gatgacgatg gcgagggcga tgttgtgatc ctcttcgagc
      661 tccttgcgca cggagaaggg cgccgccttg acgatgatcg cgtaggcgat ggcgaatacg
      721 atcaggccga agagggtgaa gatcgccgtg ctgagcagga cgtagccgag ttcggtgggc
      781 gacatcccgc gggcgatggg cgtcgcgctc gtgttcgcct gcgcgatgag tagtctagta
      841 agcatcattt tcctccgcgg aagccggaat gccaggggta gatgtaagtg cggtagccgc
      901 cgggcgtgtt gcgcacgtcc gccgggagct gttggcgcgg cgcgaggctc atctcccagc
      961 ccatccacgt cgccccgacg tagagcagga gcagcccgcc cccgagcaag agataaagtt
     1021 tactgagcat tcgttctcca gagatgagtt atgagtgatg agtaatgagt aaaaatcatt
     1081 cgcccctcct acgcaataaa atcttcaaaa cgctcaatct tcttactcat cactcatcac
     1141 tttcttctga gtcgtatggg ttgaaggagc tgtcggccca gcgccgccgc tcgaagctga
     1201 agtgccacca ggctatgagc acggggacga cggagagcgc gacgagcagg agcacgaggt
     1261 tgacgacgcg cggcacgccc tgctcgactc gcaccgttag ctgcggcggc accgcctggt
     1321 tccagttctc ccactgcgct tcgagccgca tcgtgtagcg cccggccggc agcgacgaaa
     1381 ggaacgccgt ctcgttcttc ccgccctcgc tccacgcctc gccgccctcg acgcccgagt
     1441 agtactcaat cggcaggtgg aactgctgca cgagccccgt ctcctcgttg atgaggtcgc
     1501 ccgcgacgta gagccagttg ttctcgacgt tcgcagtccc ggacacgcgc acgttgcggc
     1561 gcccgtcgag ctcgaaggcg tcggtgaata tgacctgcgt tccctcgccc ggggggatgc
     1621 gcggcgaagg cggcacgggc ggcagccgcg ccgtcacggt gtcgcgcggg ttcgtggcag
     1681 cggccggagt aggcgtgggc gtcggcgtcg gttgcaggcg gtagctgtcg ctaaagacga
     1741 gcctgcgcgg cgccgtcacg aggttggcga cgcccgcgag cagcgcgacg aacatgagca
     1801 aggcccagta ggcgtacacg gccttgtggc ggaagggctg gttcggcgcg accttgctcg
     1861 ggcgcgggag attgacgttg tacttgcgct ctatctcctt gacggggacg tatgtgccga
     1921 gcgaccagtt gacctcctcc gattcggtct tcgccttccc tcccgagctt accgagacct
     1981 ccttcgagag catcagcggc ggccgcacgt agtccgtggc gcgcgcgcgc tcgccgaccg
     2041 tgaccttcca gtacatctcg ccctgcacgt actcgcagcg cgcggtcgcg tcctggaaaa
     2101 tcttgaagcg cttgccgcgg aagactgcgc cgttcgtctc cgttatctct ccgggcgcga
     2161 ccggctcgac gaagctccag tggccgtcgg actctacgag ccagcggaag cccgcggccg
     2221 ggttataaag gaggtactcc tgccagtagt agcgtacgcc ctcgaactcg acgctcctga
     2281 ccatgaagcc tatgagcgtg aactgcgcgc cgccccactc cgcgaccgcg ccgagtggca
     2341 gagacatgcc ccagcccttc ggctctaagg tcttcaggta tcggaactcg ccctggttca
     2401 cgtcgaggag cgagccgcag ttcgggcagg ccacgcgctc ggtgcggtcg ggcgcgcgca
     2461 gctccagcgg gcctccgcaa ttcgggcagc cgagcttcga ggctgtgact ttccgggcct
     2521 cgcgctcgcg cgttcgggtg gcgtgcgcga gcccgagctg ttcgagcgtg acttcgcggc
     2581 cgacgaagac cgagggcggg tgcgagccgt agtctagcgt gccgaagacg ccgtcctgcc
     2641 ccgagaggtc tgcgtagaag tacgtctcgc cggggcgcag caggtaggga atctcgccct
     2701 cggcccccgc catcgtggcc gagcccttct cggcgacgac gggaggcggc tgcgagggga
     2761 tggccgcgac gggctggccg agttgaagct ggtcgtagaa cggtaaggcg cggggctccg
     2821 gcacttgaat ctcgaaggtg aggaggaagc gcccctgcgc ctctgctagc cagccccagc
     2881 ggccgtcggc gaaggcggcg taccactcgt cccagatgcc gccggccgcg tgctgaagct
     2941 gcgcgcgccc cgtcagctcg aacgcgacgt tctgccagac cccgcgaagg ccgacttcga
     3001 gcggcgagcc cgactcgaca acgtcggcca cctttccgat gtcctcgacg ccgcggtctg
     3061 tgcgcgccac gaccgagtgg cagaactcgc agaccacgac gacggacgag ccggccttga
     3121 acgtaacgtc cgcgccgcac gcggggcagt tcgcgcggta cgccatcagc ccgccccccc
     3181 gcgcgccgcc tcggcctcgg ggagctggcg gctgaaccgg cgcacgctca ccgccctcgc
     3241 gcctatcagc tcgcgcaggc gctcgtccca cggccagcgc gggcgctcgc ggcagcagta
     3301 gaggttgaag gtcgcgaagc cgaactcggg gtatgtgtgg caggcgaggt gcgactcgga
     3361 gagcagcgcg aggcccgtca cgccgcccgc gccggggaac ttgtgccaga cgggctcgcc
     3421 gacgacgcgg aggctcaact cctcgacggc gcgcgagaag agcgcgcgca ggcgctccac
     3481 gtcgcggagc gcctcggcgt cgcagcccga ggcctcgacc aaccactcag tcccgaccgt
     3541 cagcatcgtc tgtgtgaaaa ctctgccctg aagagaagat gaccgatggg gaagaacgcc
     3601 gccccgaatg gcgcgagcat aggcgaaagg cgggcgcgat tgcaacaact cttttcccgc
     3661 ccgcgcaaga cgcccgcgct gcgccgttct acaatcgccc cggacgaagc aaaccgggtc
     3721 gaaggagaac gacgaacgcc atgcccgaag ccttccgcgc cgcccccgcc ctcctactca
     3781 tcgtcgcgct gctcgccccg cccgccgccg cgcagaagga cgaggggcgc cgcgccgcgc
     3841 tccgccgcgc gttcatcgag gcgttcggcg agcacctgga gatagcctcc gacgagttga
     3901 cacgccgctc cgcctggcat ggcgcggggc tctactggct tgtgcatgcc atgccgaaac
     3961 gcgcgggcta cttccgtctc aagtaccggt acaggaacgt tgatcacgtc aacccgaaag
     4021 acccgacgca cgagttcgtc gagcgcacga tgggcttccg cgtgggagag cgcggctgcc
     4081 cgcgccgtcc gcgccacgcg cacgtctgcg tcggcgacac gctcatactg cccttcgtcg
     4141 cgggcgactc gcgcaacgac ttcgccgagc acgtcttcac tctcgacgcc taccacccgc
     4201 cgtcaaacga cgacgcggag acctacgaac ggccccacga cgagaagact ttcagcagcg
     4261 agcccgtcaa caacccggcc ggcgccttcc tcaagtacgt cggccggcac tcgagttact
     4321 cgccgcaccg cgcgctcggc tacacgatgg agttctacgc cacgttcgag gccgtggcgc
     4381 ccggccgctt caaccttctg ctcgccgcga gcccgccgcc cgaaggcgcc gcgccggccg
     4441 cccgcctcgc cggctcagtc cccgtcatcg tcgtcgagcg cggcgcgcct ataaccgcgc
     4501 tcgtcccccg cgcgagcgtg cgcggctaca gccagcgctt cgagtcaacc tggggcgagg
     4561 gctaccccgt cacgccgctc atactccagc ccggcgagcg cgtcacgctc ccctaccacg
     4621 ccttcagcgt gcgcggccgc gaccccggcc ccggagagag ggcgaaagac cccgcgccct
     4681 tcatcaccct ccttcccttc cacgttgacc ccgcgcaggg cttcaacgag tgggtagtcg
     4741 gccgcccgcc cgtcaaaaaa cagtagtcag tagaagtaca gtctccgtga aagcgtaggg
     4801 gtgaaagcgt caacgagccg gtcgcggagc gctactgact actccttttg cctttgccgc
     4861 gcgcggtggc tatgatgcct gcgactgttc gggagtgata attcgggcat gctgtacctt
     4921 tcgcaactgc tcggccgccc gatacgcgac atggagggcg agcgcgtggc gacgataaag
     4981 gacgtgatag tgcgcctcgg cgaagaccac ccgcccgtga cgggcgtggt cgcgcgctac
     5041 cgccgccgcg acttcttcat gccccgcgcg cgcatcgaga agctcgacga gcagggcgtg
     5101 cgcttaagct cagacgtttt agacctgcgc cccttcgcgc ggcgcgacgg cgaggtgctg
     5161 ctcgcaaagg acgtgctcga caagcagctc atagacgttg acggtaagcg cgtcgtgcgc
     5221 gtcaacgacg tgcagctcat aggcgtcggc ggcgagtggc gcgtcaccgg cgcggacgtt
     5281 tcgctccagg gcctctggcg gcgcctgacc ccgcacaact tcatcggcac caaccgcccc
     5341 gtcgaggtca ttgactgggc cgacgtcggc tacctggcga ccgacgccgc caccgtgcag
     5401 ctcaagtcct cgcgcgacaa gctcgcgcgc ctccaccccg tcgagattgc gcgactcgcg
     5461 gaggccctct cctaccacca gggcgccgag gtcgtcgagg ccctcgacga cgagaccgcc
     5521 gccgagaccc tcgaagagat gtccgaggag gatcaggcgc gcatcatcgg cgacatggac
     5581 gaggagcgcg ccgccgacat actcgaatgg atgtcgcccg acgaggcggc cgacgtgctc
     5641 ggggacttgc ccgaggagaa ggccgaagat ttgctcgaac gtatggagag cgaggagaag
     5701 gccgacgtgg ccgagcttct cccttacgag gacgacgagg ccggcggcct catgacgacc
     5761 gagttcgtcg cggtgcctaa gaacctcacg gtcggcgagg ccatcgcgcg cctgcgcgag
     5821 atggcggaga cgccgaacat gatttattac ctgtacgtcg tcgaggagga gggctcctgg
     5881 aggatttgcg gcgtcatcgc gctccgcagc ctcatactcg cagacccgga cgcgccgctc
     5941 tcggaggtca tgcgaaccga gttccagtac gcgcgcccga cggactccgc ccgcgaggtg
     6001 gccgagacca tagccgagta caacctgctc gccctgccgg tggttgacga catgggcgac
     6061 atcgccggca tcgtcaccgt tgacgacgcc atggagctgc tgctccccaa aggctggcgc
     6121 cagcgcatcc ccaaggtttt cagttaaact gccggcggcg cgcgcccgag atcagatgaa
     6181 cgccgtgtac gatctcttcg ctgcgaacac gccgccgctg tgggcgtggc tggcgggcgg
     6241 ccccccggcg ctcgcgtggt cgtacctgtg cctgcggctg gcggcgtatt tgaaatgcga
     6301 gaaggggttg aggacgggct acacgcggaa gacttaccac gtgctgatat ttatgacggc
     6361 cgtcgcggcg caggccgtgt ggggcctgcc gggc
//
LOCUS       DASPKR010000118         9478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_12922, whole genome shotgun sequence.
ACCESSION   DASPKR010000118 DASPKR010000000
VERSION     DASPKR010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9478)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9478
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12922"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..946)
                     /locus_tag="VD968_03435"
     CDS             complement(<1..946)
                     /locus_tag="VD968_03435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13477.1"
                     /translation="MFSVPQIICPSCSATMPYTAAACPGCKRRMVGVGYPARSPGPRK
                     PPDLGPTPFVECRAPGCHYFVTASDTVCPNCGADEPSRAGRRGRLGAFLKARDSQGLL
                     FSLILLIFTAVLLAFYALDGGDRALPWVIVVGGFASAAAGWGLTRLLRRAFDLAGAGG
                     GAAAAGSGALRHSETTIMQRLVEIRRRGQQVEAALARAHPEAVGRMAEAREALKGARQ
                     LLRRQHARYGMKLVEIEAARWQNGLAPLIHNLGELTFEQNENRLRALDAAVAEGARLR
                     SKAEKHREALGDGGEVEEFARKVSETLESCARIREALAG"
     gene            complement(973..2340)
                     /locus_tag="VD968_03440"
     CDS             complement(973..2340)
                     /locus_tag="VD968_03440"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE13478.1"
                     /translation="MGRKSILVVDDEKSQREILEMILSGEGYDVTTAASGEAALRIAR
                     EKRFDLALTDLKMTGMDGIELLAKLLAFDSSIIVILLTAHGSIDSAKEALRRGAFDYL
                     EKPFERDALLDTIRRALSRLDALDQEIISASSEMEAVKKMILKVARSNSTVLIRGESG
                     TGKELIARAIHTQSPRADQMFQAVNCAAINENLLESELFGHEKGSFTGAHAEKKGLFE
                     VADHGTLFLDEIGELDVSMQAKLLRALQEREIRRVGGTRPIKIDVRVVAATNRDLRAM
                     AQDGRFRDDLYYRINVLSIDVPPLRERREDIPVLMEFFLKKHTRNTSRLIRGLTPEAR
                     KVMLDYAWPGNVRQLESAIERAILLAEADYITVEDLPLEVRQETRPLAEGAGFKLPAE
                     GVNFEDVERNLILQAMERTDYNITKAAKLLGLTFRTLQYRLEKFGIKRPDRHGGPAEE
                     EEAEE"
     gene            complement(2406..3923)
                     /locus_tag="VD968_03445"
     CDS             complement(2406..3923)
                     /locus_tag="VD968_03445"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE13479.1"
                     /translation="MRLPKLFYSFRTRLLLVLAVLLVATLGVQYYLFRREELRRAVIL
                     SEQEQALFASTEMALASITSRVYFEELDRRRPVPFLEEQAGRVINILVVNEQGRIDDS
                     LDPRYAPTMKDGVATYFNVSDPAVSLPRLVETGQTATRLRQMLPAAPPPTDRPIAGEP
                     RAFPIQVETSEGPYYIIVVLGAAKTPHTDSWWDVAQPLLPTIIVFVLATTAAAFLVLR
                     FTRPVKELSRATQRVAAGDFSFRVPSEDRRDEVGRLAATFNEMIAQLGRMRDLESQIK
                     QAEQSAVIGRLASAIAHEIRNPLNYINLTLDHLRTTLAPNDPAKRELVLRLTAQLKAE
                     VARINTRISEFLKYTRPASLDLRPLDLRETLTDALRMVEVQAAESGVEARMEEEGRVP
                     PVLGDAESLRSVFTNLIINGMQSLEGEGGRLLVRLSARDGRARVEVSDTGRGISPEHL
                     PKIFEPYFSTKETGTGLGLAIVKKAVEDHNGTVTVESREGEGTTFAVELPTVERG"
     gene            4274..5965
                     /locus_tag="VD968_03450"
     CDS             4274..5965
                     /locus_tag="VD968_03450"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HYE13480.1"
                     /translation="MTPKFPSPRTIALSVCLTVLLLAAPAAANAAASKSKKTPAKPKA
                     AAAKTAAKGRASARENRRDKAAARKGADRRREERASKAARGKTRNERAAKGSKASRRD
                     RREERAEKQSRAKDTRKMSKRERMAEARREAERRRREAAERARQIAIARAAAIARARA
                     AEQALKEESRNNILSDETTGEDLEVRRVAVEALGSRAGSVVVMNPKTGQVYTVVNQSW
                     ALRRGFKPCSTIKLVTGLAGLNESVIDPVQTVNIGTGSFSLDLTDSLALSNNGYFQRV
                     GGQVGFEKMMEYSRKFGLGQPTGINHPFENPGRLPVFKEGYAVNHMSSHGDDIEVTTI
                     QLANMASTIANGGKRLVPHLPRTPQESVRFKREVKAELDVPQDHLRRLVPGMIGAVNY
                     GTARRAYDPTQTVAGKTGTCTGQGTKLGLFTSYGPVHDPQLAVAVIIRGPGSGGKWAA
                     AVAGDIYRRLSHRFGTRPGTAPMLANDMLAPRPKIDPSKAALVSDEERDDEAADQTDA
                     YVVSESQEQSAPTNGATLPSLQKTSRSVQRPAAAPTPSPSPVETRPRRVNNNKPE"
     gene            6333..7472
                     /locus_tag="VD968_03455"
     CDS             6333..7472
                     /locus_tag="VD968_03455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13481.1"
                     /translation="MKNTVRVLTLIALAATFSLPALAQDAAATQSTASQTEEEQRSAK
                     YAEFLKLYKGTPEQQKQAADIGREYVAKYGSNTADENNAQIVKFIQGWLARYDKAVRD
                     YEFDQAVRNNQVPRAFELGRQVGAAEPDNVTVQLRLALLGLNAAAAKNEANNADTIQA
                     AKRALQLVESGKTPDKDNWAPFPNRDEAIGALNFTLGWLLLKTDPVTASNHLVKVAQS
                     NTRFKKDPTTYYSLGSAYYNSPEFQRMLTEYNEKYAGKEPVPEGVALLDKINHVLDRV
                     IDAYARAVAATTDATQKAAFMKALTAVYKARYDKEDGVQELVNTVASRPLPLLSDPVK
                     MTPPPTTPATGTTTTPSGSATSGATTTTPASTNGTKPATPPKPKR"
     gene            7576..8310
                     /gene="rnc"
                     /locus_tag="VD968_03460"
     CDS             7576..8310
                     /gene="rnc"
                     /locus_tag="VD968_03460"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR02191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HYE13482.1"
                     /translation="MTKKGSTREAPSDLGALEERLGYEFKDRALLERALTHRSYAHEN
                     VRSGEEEKARAMHNEALEFVGDSVLGLVVADALFRAHPDVTEGELSRMKHRLVSTQTL
                     ARAARALQVGESLRVGRGEEKTGGRRKRALLADAFEAVLAAVFIDGGFDEAGRFVARA
                     LGRELEEATPESAAAADYKTLLQERLQAERRVTPHYDLIETEGPPHSHTFHVEVVWDE
                     QRARGSGKTIKAAEMDAARRALEGME"
     gene            8455..9420
                     /gene="lepB"
                     /locus_tag="VD968_03465"
     CDS             8455..9420
                     /gene="lepB"
                     /locus_tag="VD968_03465"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:NF021981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HYE13483.1"
                     /translation="MSREQTGAGLAEPPAGAEEYEAGREGARGGGSTPGGFAERKPQG
                     PPRGVLREYFESLVVTALMALFGMTFVVQAVKVPTGSMQNTILIGDHLLVNKFIFAPG
                     PPAPFLPQREVRRGDIIVFKYPGKYPSEQFEHYNVNDTLPDNTPFKTNYVKRVIGLPG
                     ERVEIRGTEVFVNGALIEEHRVPALNPPQHDNPATSGDESGAPLRDERTGRPLIDENA
                     PDTGGAPYNVFWKPQTLRGAEPETGGETSFDVPEGHYLVLGDNRENSQDSRFWGFVPR
                     HLVIGRAMFVYWSYDESAPQTGGPVGFIQDFFVNTRWRRTGTLVK"
BASE COUNT         1630 a         3215 c         3182 g         1451 t
ORIGIN      
        1 ggccggcgag cgcctcgcgt atgcgtgcgc aggactcaag cgtctcggag accttgcgcg
       61 cgaactcttc gacctcgccg ccatccccga gcgcttcgcg gtgcttctcg gccttcgagc
      121 gcaggcgcgc gccctcggcg accgcggcgt cgagggctct cagtcggttc tcgttctgct
      181 cgaaggtaag ctctccgagg ttgtgtatga gcggcgcgag gccgttctgc cagcgcgcgg
      241 cctctatctc gacgagcttc atgccgtagc gcgcgtgctg ccggcggagg agttggcgcg
      301 cgcccttaag cgcctcgcga gcctcggcca tgcgcccgac ggcctcgggg tgcgcgcggg
      361 cgagcgcggc ctcgacctgt tgcccgcgcc tccttatctc gacgagcctc tgcataatcg
      421 tcgtctcgct gtggcgcagc gcgccggagc cggccgccgc ggcgccgccg ccggcccccg
      481 cgaggtcgaa ggctctgcgg agcagtcgcg tcaagcccca cccggcggcc gcggaagcga
      541 accccccgac gacgatgacc cacggcagag ccctgtcgcc gccgtcgagg gcgtagaagg
      601 cgagcaggac tgccgtgaag attaagagga ttaaagagaa gaggagaccc tgactgtcgc
      661 gcgccttcag gaacgcgccg agccggcccc gacgcccggc ccgcgacggc tcgtcagccc
      721 cgcagttcgg gcagaccgtg tcgctcgcgg tcacgaagta gtggcagccc ggcgcgcggc
      781 actcgacgaa gggggtgggg ccgaggtcgg ggggcttgcg cgggccgggc gagcgcgccg
      841 ggtagccgac gcccaccatg cgccgcttgc agcccgggca ggcggcggcc gtgtagggca
      901 tcgtcgcgct gcacgagggg cagattatct gggggacgct gaacatactg gcgcaaaggc
      961 ttcggcgcgc cgctactcct cggcctcctc ctcttccgcg gggccgccgt ggcggtcggg
     1021 ccgcttgatg ccgaacttct cgagccggta ctggagcgtg cggaaggtga ggccgaggag
     1081 cttggcggcc ttcgtgatgt tgtagtcggt acgctccatc gcctgaagga tgaggttgcg
     1141 ctcaacgtcc tcgaagttga cgccctcggc cgggagcttg aagccggcgc cctcggccaa
     1201 gggccgcgtc tcctgccgga cttcgagcgg caggtcttcg accgtgatgt agtcggcctc
     1261 ggcgaggaga atcgcgcgct cgattgcaga ctccaattgg cggacgttgc cgggccatgc
     1321 gtagtcgagc atgaccttgc gggcctcggg cgtaaggccc cgtatcagcc gggaggtgtt
     1381 tcgcgtgtgc ttcttcagga agaattccat gaggacgggg atgtcctcgc ggcgctcccg
     1441 gaggggcggg acgtcaatgg agaggacgtt gatgcggtag tagaggtcgt cgcggaagcg
     1501 cccgtcctgc gccatcgcgc gcaggtcgcg gttggtggcg gcgacgacgc gcacgtcaat
     1561 cttgatgggg cgcgtgccgc cgacccggcg gatctcgcgc tcctgtaacg cgcgcaggag
     1621 cttggcctgc atggagacat cgagctcgcc aatctcgtcg aggaagagcg tgccgtggtc
     1681 ggcgacctcg aacaggccct tcttctcggc gtgcgcgccg gtgaacgacc ccttctcgtg
     1741 gccgaagagc tcggattcga gcaggttctc gttaatcgcg gcgcagttga cggcttggaa
     1801 catctggtct gcgcgcgggc tctgcgtgtg tatggcgcgg gctatcagct ccttgcccgt
     1861 gccggactcg ccgcgtatga ggacggtgga gttcgagcgc gcgaccttca ggatcatctt
     1921 cttgacggcc tccatctccg aggaggcgga gataatctcc tggtcgagcg cgtcgaggcg
     1981 cgagagcgcc cgccggatgg tgtcgagcag tgcgtcgcgc tcgaacggtt tttcgaggta
     2041 gtcgaaggcg ccgcgcctga gcgcctcctt agccgagtca atcgagccgt gcgcggtcag
     2101 caggatgacg atgatggagg agtcgaaggc gaggagcttg gcgagcagct ctatgccgtc
     2161 catgcccgtc atcttcaggt ctgtgagcgc gaggtcgaag cgcttctcgc gcgcgatccg
     2221 tagcgctgcc tcgcccgagg cggccgtcgt cacgtcgtag ccctcgcccg agagaatcat
     2281 ttcgagaatt tcgcgctgcg acttctcgtc gtcaacgaca aggatgcttt ttcggcccat
     2341 cagtgaacct cagatgtcag atgctgggtg ctggtctaga aacacttctg actagcatcc
     2401 agcatctagc ctctctctac cgtcggcagt tccaccgcga acgtagtgcc ttcgccctcg
     2461 cggctctcta ccgtgacggt gccgttgtgg tcttcgacgg ccttcttgac gatggcgagg
     2521 ccgaggcccg tccccgtctc cttcgtggag aagtacggct cgaaaatctt ggggaggtgc
     2581 tccggcgaga tgcctcggcc cgtgtccgag acctcgacgc gcgcgcgccc gtcgcgcgcc
     2641 gagagcctga cgagtaggcg cccgccctca ccttccagag actgcatgcc gttaatgata
     2701 aggtttgtaa agaccgaacg taaagactcg gcgtcgccga gcacgggagg cacccgcccc
     2761 tcctcctcca tgcgcgcctc gacgccggac tcggcggcct gcacctcgac catacggagc
     2821 gcgtccgtga gcgtctcgcg caagtccagg ggcctcaagt cgagactggc cgggcgcgtg
     2881 tacttgagga actcgctgat gcgggtgttg atgcgcgcga cctctgcctt gagctgggcc
     2941 gtgaggcgca gcacaagctc ccgcttcgcc gggtcgttgg gcgcgagcgt agtgcgcagg
     3001 tggtcgagcg tgagattgat gtagttgagc gggttgcgta tctcgtgcgc gattgcggag
     3061 gcgagccggc cgatgacggc cgactgctcg gcctgcttta tctgcgattc caggtcccgc
     3121 atgcgcccga gctgcgcgat catctcgttg aaggtggcgg cgagtcggcc gacctcgtcg
     3181 cgccggtctt ccgacgggac tcggaatgag aagtcgcccg cggcgacgcg ctgcgtggcg
     3241 cgcgagagct ccttgacggg gcgcgtgaag cgcaggacga ggaaggcggc ggccgtcgtg
     3301 gcgagcacga agacgatgat ggtcggcagc agcggctgcg caacgtccca ccaggagtcg
     3361 gtgtgcggcg tcttggcggc gcccaggacg acgatgatgt agtaaggccc ctcgctcgtc
     3421 tcgacctgta tggggaaggc gcgcggctcg ccggcgatgg ggcggtcagt gggcggcggg
     3481 gccgcgggca gcatctggcg caggcgggtc gcggtctgcc ccgtctctac cagccggggc
     3541 aggctcacgg ccgggtcgga gacgttgaag taggtcgcga cgccgtcctt catcgtcggc
     3601 gcgtagcgcg ggtcgaggct gtcgtcaatg cgcccctgct cgttgacgac gaggatgttg
     3661 atgacgcggc cggcctgctc ttcgaggaag gggacgggcc gtcgcctgtc cagctcctcg
     3721 aaatagacgc gcgacgtgat ggaggcgagc gccatctccg tgcttgcgaa gagcgcctgc
     3781 tcctgctcgg agaggatgac ggcgcgcctc agctcctcgc gccggaagag gtagtactgc
     3841 acgccgagcg tggcgaccag aagcacggcc agcacaagca gcagccgcgt ccggaagctg
     3901 tagaagagtt tgggcaggcg catttttttt gtgttgccgc cgggctcgga cagatgttat
     3961 agtcggggcg gtctcgagcg caaacccctc cgtgagaccg aattagcagt ctctccgttt
     4021 tagctggtgc gaaaaagaag tccttgaagg ttagccagag agcttgaagg gaaagtcttt
     4081 gtcgtggctt ttgagcgctt cgagttagtc accacggggc cgcgcgcgga aggcgctggc
     4141 gcggcccggc acgcaagcaa agctctgtac agttaggccc tgaaagtcaa cccggccgag
     4201 cggtcgcttc ccctcgtctt tgagcgccgc cgcggtcgcc ctgcttgttt tttaagctga
     4261 ggatgaagtt tcgatgaccc caaagttccc gtccccccgc acgatcgcgc tctccgtctg
     4321 cttaaccgtt ctgctgctgg ccgcgcccgc tgcggccaac gccgccgcct ctaaatcaaa
     4381 aaagactccg gcgaagccga aggccgctgc cgcgaagacc gccgcgaagg gtagggcttc
     4441 ggcgcgcgaa aacaggcgtg acaaggcggc cgcgcgcaag ggcgccgaca ggcggcgcga
     4501 ggagcgcgcc tcgaaggcgg cgcgcgggaa gaccaggaac gagcgggcgg cgaagggctc
     4561 gaaggcttcg cgccgcgacc ggcgggagga gcgggccgag aagcagtcgc gcgccaaaga
     4621 cacgcgcaag atgtcgaagc gcgagcgcat ggccgaggcc cggcgcgagg ccgagcgccg
     4681 ccgccgcgag gccgccgagc gcgcgcgcca gatagccatc gcgcgcgccg ccgcaatcgc
     4741 ccgcgcgcgc gccgccgagc aggccctcaa ggaggagagc cgcaacaaca ttctgagtga
     4801 cgagacgacg ggtgaagacc ttgaggtgcg ccgcgtcgcc gtcgaggcgc tcggcagtcg
     4861 cgcaggctct gtcgtcgtga tgaacccgaa gacggggcag gtctatacgg tcgtcaacca
     4921 gagctgggcg ctgcgccgcg gcttcaagcc ctgctcgacc atcaagctcg tcacgggcct
     4981 cgccggcctc aacgagagcg tcattgaccc cgtgcagacc gtcaacatcg gcacgggcag
     5041 cttcagcctc gatctcaccg actcactcgc gctctcgaac aacggctact tccagagggt
     5101 cggcgggcag gtcggcttcg agaagatgat ggagtactcg cgcaagttcg gcctgggcca
     5161 gccgaccggc atcaaccacc cgttcgagaa ccccggccgc ctgcccgtct tcaaggaggg
     5221 ctacgccgtc aaccacatgt cctcgcacgg cgacgacatc gaggtcacga ccatacagct
     5281 cgccaacatg gcctcgacga tagccaacgg cggcaagcgc ctcgtcccgc acctaccgcg
     5341 cacgccgcag gagagcgtcc gcttcaagcg cgaggtcaag gccgaattgg acgtgccgca
     5401 ggatcacctg cgccgcctcg tccccggcat gataggcgcc gtcaactacg gcacggcccg
     5461 ccgcgcatac gacccgacgc agaccgtcgc cggcaagacc ggcacctgca ccgggcaggg
     5521 gactaagctc gggctgttca cctcctacgg ccccgtccac gacccgcagc tcgccgtcgc
     5581 cgtcatcatc cgaggccccg gctcgggcgg gaagtgggcc gcggccgtcg cgggcgacat
     5641 ctaccgccgc ctcagccacc gcttcggcac tcgccccggc acggcgccca tgctcgccaa
     5701 cgacatgctc gcgccgcggc ccaagattga cccgagtaag gcagctctcg tgagcgacga
     5761 ggagcgcgac gacgaggccg ccgaccagac ggacgcctac gtcgtgagcg agtcgcagga
     5821 gcagtcggcg cccacgaacg gcgccacgct gccttcgttg cagaagacct ccaggagcgt
     5881 gcagcgcccg gcggccgcgc ccacgccttc cccctcgccc gtcgagaccc gcccgcgccg
     5941 cgtcaacaac aacaagcccg agtaagacga gaggcagcgg tctcaccttt taggtttaag
     6001 gcgccgatcc tgaagagtcg ctcagggtcg gcgctattac tttgggctcg gggccgggag
     6061 tctggaactt tttttacatt gaacttgttt tcccctgctt gacactgttc gggcgcttgt
     6121 tgcagtatct cgcgcgtaaa gaagtcctgg cctgtacgaa cccctttttc tccctcggaa
     6181 ggagccttgc gagcccctcg gaaagcggca actgcccgcg accggcgcgc atctgaacga
     6241 gcacgcggcg cctgaggctg gagcgcgctg cccctttggc ggaatccgaa ataccagcga
     6301 cggaaggtta gcgcacggag gagttgcgac ccatgaaaaa cacagtaaga gttctgacct
     6361 taattgcgct cgcggccacg ttctcgctgc cggcgctcgc gcaggacgcc gccgctacgc
     6421 agagcacggc gtcgcagacg gaagaggagc agaggtctgc caagtacgcc gagttcctca
     6481 agctttacaa gggcacgccc gagcagcaga agcaggccgc cgacatcggc agggagtacg
     6541 tcgccaagta cggctcgaac accgccgacg agaacaacgc gcagatcgtc aagttcatac
     6601 agggctggct ggcgcgttac gacaaggccg tccgcgacta cgagttcgac caagctgtca
     6661 ggaataacca ggtgccgcgc gccttcgagc tcggcaggca ggtaggcgcc gccgagcccg
     6721 acaacgtcac ggtgcagctc aggctcgcgc ttctgggcct gaacgccgca gccgccaaga
     6781 acgaggccaa caacgccgac accatacagg ccgccaagcg cgctctacag ctcgtcgagt
     6841 ccggcaagac gccggacaag gacaactggg cgcccttccc gaaccgcgac gaggccatcg
     6901 gcgcgctcaa cttcaccctc ggctggctcc tgctcaagac cgacccggtg acggcgtcca
     6961 accacctcgt caaggtggcg cagtcgaaca ccaggttcaa gaaggacccg acgacctact
     7021 acagcctcgg gagcgcctac tacaacagcc ccgagttcca gcgtatgctc accgagtaca
     7081 acgagaagta cgccggcaag gagcccgtcc ccgagggagt cgcgcttctg gacaagatta
     7141 accacgtcct cgaccgcgtg attgacgcct acgcgcgcgc cgtcgcggcc acgacggacg
     7201 ccacgcagaa ggcggccttc atgaaggcgc tgacggccgt ctataaggcc cgctacgaca
     7261 aggaggacgg cgttcaggag ctggtcaaca ccgtcgcctc gcggccgctg ccgctgctga
     7321 gcgaccccgt gaagatgacg ccgccgccga cgacgcccgc gaccggcacc accaccacgc
     7381 cgtccggctc cgccaccagc ggcgctacga ccacgacccc ggcctcgacc aacggcacga
     7441 agccggccac gccgcccaag cccaagcgct gacgccggtc gccggtcgca aaaacgcgcg
     7501 ctaacccgac gagagcgccg gcgtgacttt caaagtcacg ccggcgctct cggctttttt
     7561 gctacaatcc gccgcatgac gaagaagggc tcgacgcggg aggcgccgtc ggacttgggc
     7621 gcgctcgaag agcgcctcgg ctacgagttc aaagaccgcg ctcttttgga gcgcgcgctc
     7681 acgcaccgct cctacgccca cgagaacgtg cgctcgggcg aggaggagaa ggcgcgcgcc
     7741 atgcacaacg aggcgctcga gttcgtcggc gactccgtcc tcgggctcgt cgtcgccgac
     7801 gcgctcttcc gcgcgcaccc ggacgtgacc gagggcgagc tctcgcgcat gaagcaccgg
     7861 ctcgtgagca cgcagacgct cgcgcgcgcc gcccgcgccc ttcaggtcgg cgagtcgctg
     7921 cgcgtcggcc gcggggagga gaagacgggc ggccgacgca agcgcgccct gctcgccgac
     7981 gccttcgagg ccgtgctcgc ggccgtcttc atagacggcg gcttcgacga ggccgggcgc
     8041 ttcgtcgccc gcgcgctggg ccgcgagctt gaggaggcca cgcccgagtc ggccgccgca
     8101 gccgactaca agacgctcct acaggagcgc ttgcaggccg agcgccgcgt cacccctcac
     8161 tacgacctca tcgagaccga ggggcctccg cactcgcaca ccttccacgt cgaagtcgtc
     8221 tgggacgagc agcgcgcccg cggcagcggc aagaccatca aggccgccga gatggacgcc
     8281 gcacgccgcg ccctcgaagg gatggagtag gcggaaggca aaggacagaa ggcagtaagc
     8341 agtaggcaga aggcagtcaa gaccaacccg gttctgactg ctttctgcct tccgcccttc
     8401 tgccttctgt cctcgcttga ccgccctcgg ccgcgttatc tacgatggct gcatatgagc
     8461 agggaacaga cgggggcggg gctggccgag ccgccggcgg gcgcggagga gtacgaggcg
     8521 gggcgcgagg gcgcgcgcgg cgggggctcg acaccgggcg gcttcgcgga gcgaaagccg
     8581 caggggccgc cgcgcggcgt gctgcgggag tatttcgagt cgctggtcgt cacggccctg
     8641 atggcgctct tcggcatgac cttcgtcgtg caggccgtca aggtgccgac cggctcgatg
     8701 cagaacacca tcctcatcgg cgaccacctg ctcgtcaaca agttcatctt cgcgccgggg
     8761 ccgcccgccc ccttcctgcc gcagcgcgag gtacgccgcg gcgacatcat cgtcttcaag
     8821 taccccggca agtacccctc ggagcagttc gagcactaca acgtcaacga cactctgccc
     8881 gacaacacgc cgttcaagac gaactacgtc aagcgcgtca tcggcctgcc cggcgagcgc
     8941 gtcgagatac gcgggaccga agtcttcgtc aacggcgcgc tgatcgaaga gcaccgcgtc
     9001 cccgcgctca acccgccgca gcacgacaac cctgcgacga gcggcgacga gtccggcgcc
     9061 cccttgcgcg acgagcgcac gggaaggccg ctcattgacg agaatgcgcc cgacacgggc
     9121 ggcgccccct acaacgtctt ctggaagccg cagacgctcc gcggcgccga gcccgagacg
     9181 ggcggcgaga cctccttcga cgtgcccgag ggccactacc ttgtgctcgg cgacaaccgc
     9241 gagaacagcc aggacagccg cttctggggc ttcgtcccgc gccacctcgt catcggccgc
     9301 gccatgttcg tctattggtc ttacgacgag agcgccccgc agacgggcgg ccccgtcggc
     9361 ttcatacaag acttcttcgt aaacacgcgc tggcgccgca ccggcaccct agtcaaataa
     9421 gtcgtaaaca attcgtgact ctttcgactc ccggcgcgcc gacactacgg cgccggag
//
LOCUS       DASPKR010000119         5607 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1566266, whole genome shotgun sequence.
ACCESSION   DASPKR010000119 DASPKR010000000
VERSION     DASPKR010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5607)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5607
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1566266"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..633)
                     /locus_tag="VD968_03470"
     CDS             complement(<1..633)
                     /locus_tag="VD968_03470"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HYE13484.1"
                     /translation="MLSQVVELIESKRRFAITSHIRPDGDSLGSSLGLFWLLRALEKD
                     VEVIMRDPVPHAYQKLPGSELVRVTPSVDRPYDAVFVIECSDVSRPGLVDLEKQFVVN
                     IDHHSTTALFGDINWIDSTASAVGEMIYNLCKAIGVRVTKEIAECVYTALITDTGSFH
                     YSNTSERTFKVASELVRAGVKPAKVSQAVFASYPWSKIELLGEVLTTLKRD"
     gene            complement(689..1102)
                     /gene="rbfA"
                     /locus_tag="VD968_03475"
     CDS             complement(689..1102)
                     /gene="rbfA"
                     /locus_tag="VD968_03475"
                     /inference="COORDINATES: protein motif:HMM:TIGR00082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HYE13485.1"
                     /translation="MRRPEKLAESIREEVIQIVGYELEDPRVASVTVTEVRVSENLRD
                     ARVFFTAEGTEAERVEALKALQKAAPYVRRQLSMSLNLRYTPELHFVRDTVEESAARV
                     EALLTDIGQERADQPSPAEGAAGEQERSKEVTGDA"
     gene            complement(1154..4021)
                     /gene="infB"
                     /locus_tag="VD968_03480"
     CDS             complement(1154..4021)
                     /gene="infB"
                     /locus_tag="VD968_03480"
                     /inference="COORDINATES: protein motif:HMM:TIGR00487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HYE13486.1"
                     /translation="MTAAHTSKVRIYDLAKELKMESKRLIEEVRREGVDVSVPSNTIS
                     KELAEKIRNKYFPKKEVSAPRSIRVVKKAKPAEGEAATHDDAAHAPAPAEAPVPEVYA
                     GQGEQGAPAAEQPEAGSAPSARPFTPRILKPRPPVARAEHPTVAPSDGSAAAAPAPEP
                     TTASADQQQMTPATEFAPAAEQLPAQAPPPAAQADDAAAPAASAPPTATAPPAGRQVR
                     TLRLTPDAIKAGMQPGQRAPVPVAPPRPAAGEPARGRAGRDERRGGRAGRGHFEVDDA
                     LRATPGETATPQTVYTPTVDPRRPGGRGGRRGRPVHAKDAGRGGRGREHDFMPPPRAM
                     TLEGRIAQSLNVPAAGAAAGAGDLKTVRLVEGSTVKEFAEKLGIKPKDIVTLLLQRGV
                     FATINQALNTEVARDLGRRFGFDVQFVDFEEMVAEEEFEEMLERDVDDVELPRAPVVT
                     VMGHVDHGKTSLLDGIRATNVAAGEAGGITQHIGAYSVNVTNPDDPGEERRVVFLDTP
                     GHEAFTMMRARGAKATDVVVLVVAADDGVMPQTIEAIEHARAAHVPIVVAINKIDRPD
                     ANPDRVKQELANQGLQPVDWGGDTEMVPVSAKRRENLDTLLETILLTADILNLKASPT
                     RLASGVVLEAKLDRGRGAVATVLVQQGTLRVGDPFIVGQIFGKVRAMYNDRGEHIDEA
                     GPATPVEVLGLQGVPQAGETFQVVADITKAQQISHHRQMVARQQTLAQTTKRGIEALG
                     EAQVKELLAIVKADVQGSVEVLKSTLTKLSTDQVKVRVIRSGVGAITESDVLLASATQ
                     TEAAGRAVVVIGFNVRPEVRASELAKQEHVDIRLHSIIYKLEEEIRAAMIGMLDKIET
                     ERILGRAEVLQTFKVPRAGTVAGCTVREGVIRRNARARLIRDGVVAWEGDIASLRRVK
                     DDVSEVREGYECGIALHNFNDVKVGDQIEAYVIEQVAATEL"
     gene            complement(4210..>5607)
                     /locus_tag="VD968_03485"
     CDS             complement(4210..>5607)
                     /locus_tag="VD968_03485"
                     /inference="COORDINATES: protein motif:HMM:NF024582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HYE13487.1"
                     /translation="PQVVTSRTSPELLKRLFEMEVPEIYDGTVVIKSAVREPGERAKI
                     AVASTERDVDPVGACVGMKGSRVQAIIRELRGEKIDIIEWSDEPSVFAANALSPAKVN
                     QVRITDIERRQMEVIVNEDQLSLAIGKRGQNVRLATKLVGWNIDIRSEEEIKREVALQ
                     MGAMIASGEAVPLERLQGMNPAMVSTLAEHGVSDIESLANATVDDIAEYLDVSIDQAE
                     ALIGAAQAVVESARVAAEAEEAAAAGDAAEASAGEASEGEGAAEGGEESAAGAEAASG
                     AEGEARPVEQHAASVEPDPGADPGEVEPSEEMIAEGYDEAARTRAPFAAEETILASES
                     ADPIPSTEVEQMSADELLLQGAGRDLRPDTITPAPDISSAEAAVIQNSGAFVEEERPS
                     TLLDETDGVAGPVVREDEGEDDSPQSPRSGLAAEASAPEVQISSEPSLAGEGEPAPVE
                     NVAGDEAEDASGTAQ"
BASE COUNT          737 a         1900 c         1961 g         1009 t
ORIGIN      
        1 gtcgcgcttg agcgtggtca gcacctcgcc cagcagctct atcttgctcc acgggtagct
       61 ggcgaagacg gcctgcgaca ccttcgcggg cttaacgccg gcgcgcacaa gctcggaggc
      121 gaccttgaag gtgcgctccg aagtgttcga gtagtggaaa ctgcccgtgt cggtgatgag
      181 cgccgtatag acgcactccg ctatctcttt ggtgacgcgg acgccgatgg ccttgcagag
      241 gttgtagatc atctcgccga cggccgaggc ggtcgagtca atccagttga tgtctccgaa
      301 gagggccgtc gtcgagtggt ggtctatgtt gacgacgaac tgcttctcca agtcaacgag
      361 gccggggcgc gagacgtccg agcactcgat gacgaagacg gcgtcgtagg ggcggtcaac
      421 cgagggggtg acgcgcacga gctccgagcc ggggagcttc tggtaggcgt gcgggacggg
      481 gtcgcgcatg atgacttcca cgtccttttc gagcgcgcgc agcagccaga agaggccgag
      541 cgaggagccg aggctgtcgc cgtcggggcg tatgtgcgag gtgatcgcga agcgtcgctt
      601 cgactcgatc agctcaacga cttgactgag catgtctatc cagaaagtgg cgggcgacgg
      661 gtgacgagtt aagacagctt cttactcgtc acgcgtcgcc cgtcacttct ttactcctct
      721 cttgttcgcc agccgcgcct tcggcggggg agggctggtc tgctctctct tgcccgatgt
      781 ccgtgagcag cgcctcgacg cgcgcggccg actcctcgac cgtgtcgcgc acgaagtgaa
      841 gctcgggagt gtagcggagg ttgagcgaca tgctcaactg gcggcggacg taaggggcgg
      901 ccttttgcag cgccttgagc gcctcgacgc gctccgcctc agtcccctcg gccgtgaaga
      961 agacgcgcgc gtcgcgcagg ttctccgaga cgcgcacctc cgtcaccgtc acggacgcga
     1021 ccctcgggtc ttccagctcg taccccacga tctggatgac ctcctccctt atgctctccg
     1081 ctagcttctc cggccttctc ataaaagcgt gcgccgggaa cctttccctg attcccggcg
     1141 ctcaactccc gtcttacagt tcggtggccg ccacctgctc gatgacgtaa gcctcgatct
     1201 ggtcgccgac cttcacgtcg ttgaagttgt gaagggcgat gccgcactcg tagccctcgc
     1261 ggacttccga gacgtcgtcc ttcacgcggc gcagggatgc gatgtcgccc tcccacgcca
     1321 cgacgccgtc gcgtatcagg cgcgcgcgcg cgttgcggcg tatgacgccc tcgcgcacgg
     1381 tgcagcccgc caccgtcccc gccctcggca ccttgaaggt ctgtaggact tcggcgcggc
     1441 ccaggattcg ctcggtctca atcttgtcga gcatgcctat catggccgcg cgaatctcct
     1501 cctcgagctt gtagatgatc gagtggaggc gtatgtcaac gtgctcctgc ttggcgagct
     1561 cgctggccct gacctcgggc cggacgttga agccgataac gacgacggcc cggccggccg
     1621 cctcggtctg cgtggccgag gcgagcagca cgtccgactc cgtgatggcg ccgacgcccg
     1681 agcgtatgac cctgaccttc acctgatcgg tggagagctt ggtgagcgtg ctcttcaaga
     1741 cctcgaccga gccctgcacg tcggccttga cgatggcgag cagctccttg acctgcgcct
     1801 cgcccagggc ctctatgccg cgcttcgtgg tctgcgcgag cgtctgctgg cgcgcgacca
     1861 tctggcggtg gtgcgaaatc tgctgcgcct tcgtgatgtc ggcgacgacc tggaaggtct
     1921 cgccggcctg cggcacgccc tgaaggccga ggacttcgac gggggtcgcg gggcctgcct
     1981 cgtcaatgtg ctcgccgcgg tcgttgtaca tggcgcgcac cttgccgaaa atctggccga
     2041 cgatgaaggg gtcgcccacc cgcagagtgc cctgctggac gagcacggtc gcgactgcgc
     2101 cgcgcccgcg gtcgagcttc gcttcgagga cgacgcccga ggccaaccgc gtcgggctcg
     2161 ccttcaggtt cagtatgtcg gccgtgagca ggatggtctc aaggagcgtg tcgaggttct
     2221 cgcgccgctt ggcggagacg ggaaccatct ccgtgtcgcc gccccagtcc acgggctgga
     2281 ggccctgatt cgccaactcc tgcttgacgc ggtcggggtt cgcgtccggg cggtcaatct
     2341 tgttgatggc gacgacgatg ggcacgtgcg cggcgcgcgc gtgctcgatg gcctcgatgg
     2401 tctgcggcat gacgccgtcg tcggccgcga cgacgagcac gaccacgtcg gtcgccttcg
     2461 cgccgcgggc gcgcatcatt gtgaacgcct cgtggcccgg cgtgtcgagg aagacgacgc
     2521 ggcgctcctc gccggggtcg tcggggttcg tgacgttcac gctgtaggcg ccgatgtgct
     2581 gcgtgatgcc gccggcctcg cccgcggcga cgttcgtggc gcgtatgccg tcgagcaagg
     2641 aggtcttgcc gtggtcaacg tggcccatga cggtgacgac gggcgcgcgc ggcagctcca
     2701 cgtcgtccac gtcgcgctcc aacatctcct cgaactcttc ctcagcgacc atctcctcga
     2761 agtcaacgaa ctgcacgtcg aagccgaagc ggcggccgag gtcgcgggcg acctctgtgt
     2821 tgagcgcctg gttgatggtg gcgaagacgc cgcgctgaag gagcagcgtc acgatgtcct
     2881 tcggcttgat gccgagcttc tcggcgaact ccttgacggt cgagccctcg acgaggcgga
     2941 cggtcttcaa gtcgcccgcg cccgcggccg cgccggcggc cggcacgttg agcgactggg
     3001 cgatgcggcc ttcgagcgtc atggcgcgcg gcggcggcat gaagtcgtgc tcgcgcccgc
     3061 gcccgccgcg gcccgcgtcc ttcgcgtgga cgggccggcc gcgccggccg ccgcggcccc
     3121 cgggccgccg cgggtcaacc gtgggcgtat agacggtctg cggcgtcgcg gtctcgccgg
     3181 gcgtcgcgcg cagggcgtcg tcaacctcga agtggccgcg gcctgcgcgg ccgccgcgcc
     3241 tctcgtcccg gcctgcgcgg ccgcgcgcgg gctcgccggc ggcgggccgg ggcggcgcga
     3301 cggggacggg ggcgcgctgc ccaggttgca tgccggcctt gatggcgtcg ggcgtgagcc
     3361 gcaacgtcct tacctgcctg cccgccggag gggctgttgc ggtcggaggg gcggaagcgg
     3421 ccggcgcggc cgcgtcgtcg gcctgagccg ccgggggggg cgcctgtgcc ggcaactgct
     3481 cggcggccgg cgcaaactct gtggctggtg tcatctgctg ctggtctgcg ctagccgtcg
     3541 tcggctcggg cgcgggcgcg gcggccgcgc tgccgtcgga aggggcgacg gtggggtgct
     3601 cggcgcgcgc tacgggcggg cgcggcttga gtatgcgcgg cgtgaacggg cgcgcggaag
     3661 gtgcgctccc cgcctcgggc tgttcggccg cgggcgcgcc ctgctcgccc tgcccggcat
     3721 agacttcggg gacgggcgcc tcggcgggcg cgggggcgtg cgcagcgtcg tcgtgcgtcg
     3781 cggcctcgcc ctctgcgggc ttggccttct tgacgacgcg gatggagcgc ggcgccgaga
     3841 cctctttctt ggggaagtac ttgttgcgga tcttctcggc cagctctttg gagatggtgt
     3901 tggacggcac gctcacgtcc acgccctcgc gccgcacctc ctcgatgagg cgcttggact
     3961 ccatcttcag ttctttagca aggtcgtaga tccgaacctt agacgtgtgg gctgctgtca
     4021 tgcactcctt acttcgacgc ttgggaaatt cacggcgtcg cgcgctctca aggttaagtg
     4081 tcgaaccgcc ccttaacctc ccccggtggg tgggcgcgcg cggcgctccg cgggccggag
     4141 aagggttctc aaggcgggca acaggcccgc gcttctccgt gggagcggcg cgggcccgtg
     4201 cggctgcggt cactgtgcgg tgccagaagc atcttcggcc tcgtcaccgg caacattttc
     4261 aactggcgcc ggctcgcctt cgcccgcaag cgaaggctcc gacgaaatct gcacctcggg
     4321 ggccgaagcc tccgccgcca ggcccgagcg cggcgactgc ggggagtcgt cttccccttc
     4381 gtcttcgcgc acgaccggcc cggccactcc gtccgtctcg tccaggagcg tgctgggccg
     4441 ctcctcctcg acgaaggcgc cggagttctg aatcacggcc gcctcggccg agcttatgtc
     4501 gggcgcgggc gtgatggtgt cgggccgcag gtctcggccc gcgccctgga ggagaagctc
     4561 gtccgccgac atctgctcga cctcggtcga ggggatgggg tctgccgact cggaggcaag
     4621 aattgtctcc tcggcggcga agggcgcgcg cgtgcgcgca gcctcgtcgt agccctcggc
     4681 gatcatctcc tcggaaggct cgacctcgcc ggggtctgct ccggggtctg gctcgacgga
     4741 tgcggcgtgc tgctcgacgg ggcgagcttc gccttccgcg cccgaagcgg cttccgcccc
     4801 ggccgccgac tcctcgccgc cttcggccgc gccttcgcct tctgaagcct ccccggcgct
     4861 cgcttcggcg gcgtcgccgg cagcggcggc ttcttcggcc tcggcggcga cgcgggcgct
     4921 ctcgacgacg gcctgcgcgg cgccgatgag cgcctcagcc tgatcaatac taacgtccaa
     4981 gtactctgcg atgtcgtcca cggtggcgtt cgcgagcgac tcgatgtccg agacgccgtg
     5041 ctcggccagc gtcgagacca tcgccgggtt catgccctgc aagcgctcta gcgggacggc
     5101 ctcgcccgag gcgatcatgg cgcccatctg caaggcgacc tcgcgcttga tctcttcctc
     5161 gctgcgtatg tctatgttcc acccgacgag cttggtggct agccgcacgt tctggccgcg
     5221 cttgccgatg gcgagagata gctggtcttc gttgacgatg acctccatct ggcgccgctc
     5281 gatgtcggtg atgcgaacct ggttgacttt ggcgggcgaa agggcgttgg cggcgaacac
     5341 gctcggctcg tctgaccact cgattatgtc aatcttctcg ccgcgcagct cgcggattat
     5401 ggcctgcacg cgcgagccct tcatgccgac gcaggcgccg acggggtcaa cgtcgcgctc
     5461 ggtggaggcg acggcaatct tcgcgcgctc gcccggctcg cgcacggccg acttgatgac
     5521 gaccgtgccg tcgtaaatct caggcacctc catctcgaag aggcgcttga ggagttcggg
     5581 cgacgtgcgc gaggtgacga cctgcgg
//
LOCUS       DASPKR010000120         5279 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_531836, whole genome shotgun sequence.
ACCESSION   DASPKR010000120 DASPKR010000000
VERSION     DASPKR010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5279)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5279
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_531836"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..660)
                     /locus_tag="VD968_03490"
     CDS             complement(<1..660)
                     /locus_tag="VD968_03490"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HYE13488.1"
                     /translation="MSERIYRDPVHNIIRLRTDTDEGRLMVRLVDSFEFQRLRRVKQL
                     GLALFTYQGAEHSRFAHSLGVLHLMTRVLDRLGERYPIDPEARAAARAAALLHDVGHG
                     PFSHVMEKVLGFHHEAWTVRAVTSEETEIGRVLASFSGSLPARVAEIIEGRFQPAFLA
                     QLVSSQLDVDRMDYLLRDSLMTGAKYGYYDLEWVVNAIEVDEQAGRIYVSARGLYAVE
                     EY"
     gene            complement(820..4704)
                     /locus_tag="VD968_03495"
     CDS             complement(820..4704)
                     /locus_tag="VD968_03495"
                     /inference="COORDINATES: protein motif:HMM:NF028519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HYE13489.1"
                     /translation="MSRKSFEGLGAAARLALCALAVQLLLSGGLSASAQTGRSNVRGT
                     VRDPQGNVVAGATVTLANAEKNFTRTQTTNEEGGYTFTAVPPDAYRLEVESPGFKKTT
                     VAEVRALVDTSVEVDVQMEVGLPSEQVTVTGSTDAPLNTTDATIGNTFERRRIVELPL
                     NANNVVGLLSLQPGVTRSGYVNGGRADQANVTLDGVDVNEQQAGLDVVTDEAFASVLR
                     ATRDSLQEFRVTTTNPNADQGRSSGAQVSLVTRSGSNEWHGSLYETHRNTVTTANDFF
                     NNAAGSYGPEDLPVQLGQARVGDPRVPRPQLLRNVFGGSIGGPLKKDRAFFFFNYEGF
                     REASETPVVREVPLPSLGQGIVRYRNADGQIVNVTPEQIAALFPETGGINPNILPVLA
                     DAARRYPANDASVGDGLNTGGFRFNAKTPAELNTYIARFDFNLTDRQTFFARGNYQND
                     LVTRNVYGGPDCGIDSPADNIQCFPDTPPLTIWNHPKGVAFGHTWTASNTLVNRFTYG
                     FTRASFTNAGESDENRVTFRFIFAPSGYRRGLSRTTPVHNFVDDVSWVRGNHTYGIGG
                     NVRLIRNNRTSFGASFDDAIINPSYYNFSGDVLLTDFDGNPLFPDLDSSSNDLRDALA
                     TVIGRYSQYNANLVYDQSGALQPVGTPTERSFATEEYELYWQDSWRVRQNFTLNYGVR
                     WSTSTPVYERNGLQVVPTPSLGEYFRRRVESAERGVPFNDLITFVPGGKANDGPGYYD
                     QDWNNFAPSVSFAWSPDLGDNWLGRLVGRKGNSVIRGGFRMTYDRIGSQLAVNFDLNN
                     LAGFTSARNINANTFDVCCGALGPLFTGFNPTVRALDFPGATGPIPANLQFPLTVPAD
                     EDQRIEVSLDDTLTTPYNYNVNVSYGRELGRGLSFETSYVARFGRNLLATRDIMQLNN
                     IRDPQSGMTFYEAMNLLVDARYQARPIASIQNIPFFENLFPGLAGTFDVLGTPTQLTA
                     TQAAYRRVAFPSVGGRDTTDYTFVQLLWDDQPIARFNNMFYQPQFAALSAFSTIARSN
                     YNSAQFSLRQRLRNDLTFDFNYTLSHSLDSASGLQNSTSYGTAFIVNALDPDQNYASS
                     DFDVRHIVNANWLVGLPVGRGRALLGDARGITDAVLGGWNLTGIFRWNSGLPIQTPFD
                     CCVWATNWNVQSNGVRARPVESSPTRQGSPNVFSDPRAVYQSFRNARPGEVGDRNVLR
                     GEGFVTLDAGLTKNFTMPWEGHQLQFRWEIFNVTNTQRFDGQTIADLSLGGDPFLGGE
                     PGGDFGKFTSTQAPLNETKAGRVMQFTLRYQF"
BASE COUNT          817 a         1560 c         2006 g          896 t
ORIGIN      
        1 gtactcctcg acggcgtaga ggccgcgcgc cgagacgtat atgcgcccgg cctgctcgtc
       61 aacctctatg gcgttgacga cccattcgag gtcgtagtag ccgtacttgg cgcccgtcat
      121 cagcgagtcg cgcagaaggt agtccatgcg gtcaacgtcg agctgcgagg agaccaactg
      181 cgcgaggaag gcgggctgga agcggccctc gattatctcg gccacgcgcg cggggagcga
      241 cccggagaag gacgcgagca cccggcctat ctcggtctcc tcgctggtga cggcgcggac
      301 agtccacgcc tcgtggtgga agcccaggac cttctccatg acgtgcgaga aggggccgtg
      361 gcccacgtcg tgcagcagcg ccgcggcgcg cgcggcggcc cgcgcctccg ggtcaatcgg
      421 gtagcgctcg ccgaggcggt cgagcacgcg cgtcatgagg tggagcaccc cgagcgagtg
      481 tgcgaagcgt gagtgctcgg cgccctggta cgtgaagagg gcgaggccga gctgcttgac
      541 gcggcgcagg cgctggaact cgaacgagtc aacgagccgc accatcagcc gcccctcgtc
      601 cgtgtcggtg cgcaggcgga tgatgttgtg cacggggtcg cggtagattc gctcgctcac
      661 gattccgcga gtctatcaca ggaaaaagtg cgggaggcag agtgcggagt gacgaaataa
      721 agaaaagtct tattcgtcac tccgcgcccc gcctccgcgc ttaaaaagag ggccggggcc
      781 gaagccccag cccgtagagg ggagttggaa cgccgccggc tagaactggt agcggagcgt
      841 gaactgcatg acgcggcccg ccttcgtctc gttgagcggg gcctgggtgg aggtgaattt
      901 gccgaagtcc ccgcccggct cgccgccgag gaaggggtcg ccgccgaggc tcaggtcggc
      961 gatggtctgg ccgtcgaagc gctgagtgtt ggtgacgttg aagatttccc agcggaactg
     1021 aagctggtgg ccctcccagg gcatcgtgaa gttcttcgtc aggcccgcgt cgagcgtgac
     1081 gaagccctcg ccacgcagga cgttgcggtc gccgacctcg cccggccgcg cgttgcggaa
     1141 ggactgatag acggcccgcg ggtcgctgaa gacgttcggg ctgccctgcc gggtcggcga
     1201 agactccacg gggcgcgcgc gcacgccgtt ggactgcacg ttccagttcg tcgcccacac
     1261 gcagcagtcg aagggcgtct ggatgggcag ccccgagttc cagcggaaga tgcccgtcag
     1321 gttccagccg ccgaggacgg cgtccgtgat gccccgcgcg tcgcccagaa gcgcgcggcc
     1381 gcgcccgacc ggcaggccga cgagccagtt ggcgttgacg atgtggcgca cgtcgaagtc
     1441 ggagctggcg tagttctggt cggggtcgag cgcgttgacg atgaaggccg tgccgtagct
     1501 ggtcgagttc tggaggcccg aggcgctgtc gagcgagtgc gagagcgtgt agttgaagtc
     1561 gaaggtgagg tcgttgcgca gccgttggcg caaggagaac tgcgccgagt tgtagttcga
     1621 gcgcgctatc gtcgagaagg ccgatagggc ggcgaactgc ggctggtaga acatgttgtt
     1681 gaagcgcgcg atgggctggt cgtcccagag gagctggacg aaggtgtagt cggtcgtgtc
     1741 gcgcccgccg acgcttggga aggccacgcg gcggtaggcc gcctgcgtcg cggtcagttg
     1801 cgtcggcgtg ccgagcacgt cgaacgtccc ggcgaggccg gggaagaggt tctcgaagaa
     1861 cggtatgttc tggatcgagg cgatgggccg cgcctgatag cgcgcgtcca cgagcaggtt
     1921 catcgcctcg tagaaggtca tgcccgactg cgggtcgcgg atgttattga gctgcatgat
     1981 gtcgcgcgtg gcgagcaggt tgcgcccgaa gcgcgcgacg taggaggtct cgaacgagag
     2041 cccgcggccc agctcgcgcc cgtaggagac gttgacgttg tagttgtagg gcgtcgtcag
     2101 cgtgtcgtcc agggagacct cgatgcgctg atcctcgtcg gccgggacgg tcagggggaa
     2161 ctgaaggttg gccggtatcg ggccggtcgc gccggggaag tcgagcgcgc gcaccgtcgg
     2221 gttgaagccc gtaaagagcg gccccagggc gccgcagcac acgtcgaaag tgttggcgtt
     2281 gatgttgcgg gccgaggtga acccggcgag gttgttgagg tcgaagttga cggcgagctg
     2341 gctgccgatg cggtcgtagg tcatgcggaa gccgccgcgt atgacgctgt tgcccttgcg
     2401 cccgacgagc ctgccgagcc agttgtcgcc caggtcgggc gaccacgcga acgagaccga
     2461 cggcgcgaag ttattccagt cctgatcgta gtagccgggg ccgtcgttgg ccttgccgcc
     2521 ggggacgaag gtgatgaggt cgttgaaggg cacgccgcgt tcggcgctct cgacgcggcg
     2581 gcggaagtat tcgcccaggc tcggcgtcgg cacgacctga aggccgttgc gctcatagac
     2641 gggcgtggag gttgaccagc gcacgccgta gttgagcgtg aagttctgcc ggacgcgcca
     2701 ggagtcctgc cagtagagct cgtactcctc ggtggcgaac gagcgctcgg tcggcgtgcc
     2761 gacgggctgg agcgcgcccg actggtcata gacgaggttg gcgttgtact gcgagtagcg
     2821 cccgatgacg gtggcgagcg cgtcgcgcag gtcgttgctg ctgctgtcga ggtctgggaa
     2881 gagcgggttg ccgtcgaagt ccgtgagcag cacgtccccg gagaagttgt agtacgaggg
     2941 gttgatgatg gcgtcgtcga aggacgcgcc gaaggaggtg cggttgttgc ggatgaggcg
     3001 gacgttgccg ccgatgccgt aggtgtggtt gccgcgcacc cacgacacgt cgtccacgaa
     3061 gttgtggacg ggcgtggtgc gcgagagccc ccgccggtag cccgacggcg cgaagatgaa
     3121 gcggaaggta acgcggttct cgtccgactc gccagcgttc gtgaaggagg cgcgcgtgaa
     3181 gccgtaggtg aagcggttga cgagcgtgtt cgaggccgtc caggtgtggc cgaaggcgac
     3241 gcccttcggg tgattccaga tagtgagcgg gggcgtgtcg gggaagcact ggatgttgtc
     3301 ggcggggctg tctatgccgc agtcggggcc gccgtaaacg ttgcgcgtga cgaggtcgtt
     3361 ctggtagttg ccgcgcgcga agaaggtctg ccggtccgtc aggttgaagt cgaagcgggc
     3421 gatgtaggtg tttagctcgg cgggcgtctt ggcgttgaag cggaagccgc cggtgttgag
     3481 gccgtcgcct acgctggcgt cgttggccgg gtagcgccgc gccgcgtcgg caagcacggg
     3541 cagtatgttg gggttgatgc cgcccgtctc ggggaagagc gcggctatct gctcgggcgt
     3601 gacgtttacg atctggccgt cggcgttgcg gtagcgcact atgccctgcc cgagggaggg
     3661 gagcggcacc tcgcgcacta caggcgtctc gctggcctcg cggaagccct cgtagttgaa
     3721 gaagaagaag gcccgatcct tcttgagggg gccgccgatt gagccgccga agacgttgcg
     3781 caggagctgc gggcgcggca cgcgcgggtc gcccacccgc gcctggccga gctgcacggg
     3841 caggtcttcc ggcccgtagc tgccggcggc gttgttgaag aagtcgttgg ccgtggtgac
     3901 ggtgttgcgg tgcgtctcgt agaggctacc atgccactcg ttcgacccgg agcgcgtgac
     3961 gagcgagacc tgcgcgccgg aggagcggcc ctggtctgcg ttcgggttgg tggtcgtgac
     4021 gcggaactcc tgtagcgagt cgcgtgtggc gcgcagaacg ctggcaaagg cttcgtcggt
     4081 gaccacgtcg agaccggcct gctgctcgtt cacatccacg ccgtccagag tcacgttggc
     4141 ctggtcggcg cggccgccgt tgacgtagcc ggagcgcgtg acgccgggct ggagtgacag
     4201 cagcccgacg acgttgttgg cgtttagggg gagctcgacg atgcggcgcc gctcgaacgt
     4261 gttgccgatt gtcgcgtccg tcgtgttcag gggcgcgtcg gtgctgcccg tcacggtgac
     4321 ctgctcgctc ggcaggccga cttccatctg cacgtcaacc tccacgctcg tgtcaacgag
     4381 cgcgcgcacc tcggcgacgg tcgtcttctt gaagccgggg gactcaactt cgaggcggta
     4441 ggcgtcgggc gggacggccg tgaaggtgta gccgccctcc tcgttagtcg tctgcgtgcg
     4501 cgtgaagttc ttctcggcgt tcgcgagcgt gacggtggcg cccgccacga cgttgccctg
     4561 cgggtctctg accgtgccgc gcacgttgga gcggccggtc tgcgccgatg cgctcaggcc
     4621 gcccgagagc aacaactgaa ccgcgagggc gcacagcgcg agccgcgcgg ccgcgccgag
     4681 cccctcgaaa ctctttctgc tcatcttgac ctccatgctt gatagggcct tccaagtgtt
     4741 tcggaggcgg gggaagacac gctctccggg tcgggataac gaagggccgg cgggcaattc
     4801 gcattcctcc tgcgcgatcg cggcgccgca cggccgcgcg ctcaatgccg gttagtaccg
     4861 aataatggac ggcaccgagt gcgcgccgcg taagcgcgcg ggcgcggctc ggtgccgcga
     4921 actgaaattt ggacttcggc ggcttcagcc cacgcgcgcc gggcggtgcg gcgtgcgcgg
     4981 cgggctgcgc gactcgccgc gcttatacga aaatctgtaa aggctcataa ggattttcgg
     5041 atggcggccg ggcggcgaag gcgttgtaaa ggggcggcgc cgggactata ctgccgcgcg
     5101 caaacctcgc cgcgcgggct cactgacggg aggcaggcca tgaagaattt cagttcgggg
     5161 cggggcgtcg tcggcctcgc ggcgctttcg gtcgcggcgg tcttgctcgc ggcgccgctt
     5221 tgcgcgcgtg cgcagtcggg cacgggcagg cgaatcccca cggggacggg taggccctc
//
LOCUS       DASPKR010000121         6067 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1825143, whole genome shotgun sequence.
ACCESSION   DASPKR010000121 DASPKR010000000
VERSION     DASPKR010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6067)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6067
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1825143"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..438
                     /locus_tag="VD968_03500"
     CDS             <1..438
                     /locus_tag="VD968_03500"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE13490.1"
                     /translation="TQEVFVRVYRSLDQYDPKQGDLQNWLMRLARNLIIDDYRRRQRS
                     PQDTQAEDLEGHTYHLRAAGNTPQREMERRELGEQVQAGIDKLPPDLRTCVILRDIEE
                     LSYQEIVDLLKIPEGTVKSRINRGRIELAKILRRMRVVAMSDV"
     gene            479..1297
                     /locus_tag="VD968_03505"
     CDS             479..1297
                     /locus_tag="VD968_03505"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HYE13491.1"
                     /translation="MLCTDFEDRLTDYLDGALAAEAQRSCAEHAMRCPVCHELLNEVK
                     NAIVECRASEPPPPSQGLEARILQSTAPETSMACEEFEEHLTDYLDGFLPAPLYHRWE
                     RHAAVCERCTELPGQVVRAIGACYSYISEERPLPAGLHERILHATLGTAEAREVRPPV
                     GARLAEWLRGWLDVVVSPQLATVATMVLLAVLVGTSTVSDDGSIGGMYRAGLRVAAET
                     YAQGADRADDLKRVTEGLVNSPAKQQQGGQQQAPAEGGGGDAEAGDKQPGQQSR"
     gene            1347..2135
                     /locus_tag="VD968_03510"
     CDS             1347..2135
                     /locus_tag="VD968_03510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13492.1"
                     /translation="MMNCAYHLTNRAVVQCSRCARPLCPACDHRIRGFPYCQDCIVAG
                     VEVLQQQQSRASGAPVAVRRKTSPFVALLLSFLVPGMGAAYNGQTSKAIVHFTIFASF
                     FQMATVTGGMPFFLLGIAATYIYAAVDAVRTAQLIRAGLAPDAESDAIARRLYGNPLA
                     WACTMITLGTIFLLHTLFGVRLPVRELLPVLLVLLGAYMLFDYLRSRARRDVPNFDSM
                     RRPPSVVGNATASFPSEVTRFGTGELATQVTARQGGAWPTEPRV"
     gene            2202..2420
                     /locus_tag="VD968_03515"
     CDS             2202..2420
                     /locus_tag="VD968_03515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13493.1"
                     /translation="MSSLVMAAGKWGGIVALITLLIVLVKQLIALVSFLMFAIKVALI
                     LAFIALMVVLAMLIFGRRSRRRREAEGL"
     gene            2817..3671
                     /locus_tag="VD968_03520"
     CDS             2817..3671
                     /locus_tag="VD968_03520"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HYE13494.1"
                     /translation="MKRDERLYAFIVAHTSRSRSRIRRISIHKRWLKASGVLAALVLC
                     TALYGLYGLTQQAAHMRIEEENERLRLENERQRQQLKKLENRVDAIEDASRRLSEISG
                     VSHEEEGTDALGAGGPWLNLDAAAVSALEARAAHLESDLRAHEAALRERARVPSIWPI
                     EGGEVTDSYGVRGNPFGGGSSEFHLGQDIAAPRGTPVVAAADGVVVKADWQSGYGQIV
                     ILDHGNGLTTHYAHLSKIEVTEGQELTRGSQLGQVGSTGRSTGPHLHYEVRIGDVAVS
                     PLHYLPAR"
     gene            4050..4256
                     /locus_tag="VD968_03525"
     CDS             4050..4256
                     /locus_tag="VD968_03525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002439184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HYE13495.1"
                     /translation="MPRITGKVKWFNNAKGYGFIEQPGSSDIFVHYSAIQGDGFKTLE
                     EGQTVEFEVTQGPKGPQAEKVIKM"
     gene            complement(4430..5074)
                     /locus_tag="VD968_03530"
     CDS             complement(4430..5074)
                     /locus_tag="VD968_03530"
                     /inference="COORDINATES: protein motif:HMM:NF041621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MXAN_5187 C-terminal domain-containing protein"
                     /protein_id="HYE13496.1"
                     /translation="MSIRENKFARRAKERDARREKKGLVFDTPPSVDEQLGRLEEDIR
                     RLKVEFDIYFNGAAKRPPYDTKGRVETIIKRLADDRTLTFAQRYRYNSLTAHYTSFLQ
                     LWRRTMQEREEGRGPHAPRHTHRPAPQPQAAPSVFVCADARNDVATVKTLFHALVEAK
                     KRCGEPTDELSFPRFHRMVAEKSEALKSRAGCERVHFSVAVHEGRVSFKAKAEK"
     gene            complement(5171..>6067)
                     /locus_tag="VD968_03535"
     CDS             complement(5171..>6067)
                     /locus_tag="VD968_03535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13497.1"
                     /translation="WAEARGFGGVAELLRNAPAAARASAAPRRAEVARSVAVTIERFP
                     ADLDDSDDSAPEDDGADTAVEAEVEEVVKSAAGRRDDFTFLSDFQRPSHPSAGRGFFG
                     TWQAKAGAGLLLVACGVAGYAAWLNSRARVASTPPQAAPTPTLQTVATPQAAAAVTPS
                     PLASPSPLPDAQQFPGMPPGAVAPYPTTGQPYYIPPDPALANAPQVPAVISESGQPED
                     PQRSRRRTDAATREQSAANTNADGQGSEARADGDSNTARPDASTRPARPSAPTTDRQQ
                     PQPPSSSPTPAERRKVIQWPPQ"
BASE COUNT          979 a         1971 c         2060 g         1057 t
ORIGIN      
        1 acgcaggagg ttttcgtccg cgtctatcgc tcgctcgacc agtacgaccc gaagcagggc
       61 gacctgcaaa actggctgat gcgcctcgcc cgcaatttga taattgacga ctaccgccgc
      121 cgccagcgct cgccgcagga cacgcaggcc gaagacctcg aaggccacac ctaccacctg
      181 cgcgcggccg gcaacacccc gcagcgcgag atggagcggc gggagttggg cgagcaggtg
      241 caggccggca tagacaagct gccgccggat ttgcgcacct gcgtcatcct gcgcgacata
      301 gaggagctga gctaccagga gattgttgac ctcctgaaga tacccgaggg gacggtcaag
      361 tcgaggataa accgcggccg catcgagttg gcgaaaatcc tccggcggat gcgggtggtc
      421 gccatgagcg acgtttgaca gaagaatcag gagaacccgt ggtggagctg atttagagat
      481 gctttgcact gatttcgaag acaggctgac ggactacctc gacggcgcac tcgccgcaga
      541 ggcgcagcgc tcgtgcgccg agcacgccat gcgctgcccc gtctgccacg agcttttgaa
      601 cgaggtcaag aacgccatcg tagagtgccg cgcctccgag ccacccccgc cgtcgcaggg
      661 cctcgaggcg cgcattctcc agagcacggc gcccgagact tcgatggcct gcgaggagtt
      721 cgaggagcat ctgaccgact acctcgatgg gttcctgccg gccccgctct atcatcgttg
      781 ggagcgccac gcggccgtct gcgagcgctg caccgagctg cccggccaag tcgtccgcgc
      841 catcggcgcc tgctactcct acataagcga agagcggccc ctgccggccg gcctgcacga
      901 gcgcatactg cacgcgacgc tcggcacagc ggaggcgcgc gaggttcgcc cgcccgtggg
      961 cgcacgcctc gccgagtggc tgcgcggctg gctcgacgtg gtcgtctcgc cgcagctcgc
     1021 gaccgtcgcc acgatggttc tgctcgccgt gctcgtcggc accagcaccg tctccgacga
     1081 cggctcaatc ggcggcatgt accgcgcggg ccttcgcgtc gcggccgaga cctacgcgca
     1141 aggcgccgac cgcgccgatg acctcaagcg cgtcaccgag ggtttagtca actccccggc
     1201 gaagcagcag cagggcgggc agcagcaggc gccggccgag ggcggcggag gcgacgccga
     1261 ggcaggcgac aagcagcccg gccagcagag ccgttaacgt cttcgggaga acgagcagag
     1321 gggttcgggg agcttaagtg aacggcttga tgaactgcgc ataccacctg acgaaccggg
     1381 ccgtcgtgca gtgcagccgc tgcgcccggc cgctgtgccc tgcgtgcgac caccgcatac
     1441 gcggcttccc ctactgccaa gactgcatcg tcgcgggcgt cgaggtgctg caacagcagc
     1501 agtcgcgcgc ctcgggagcc ccggtcgccg tccggcgaaa gacatcgccg ttcgtcgcgc
     1561 tgctgctctc cttcctagtc cccggcatgg gcgccgccta caacgggcag acctccaagg
     1621 caatagtcca cttcacgatc ttcgcgagct tcttccagat ggcgaccgtg acaggcggga
     1681 tgcccttctt cctgctcggc atcgccgcga cctacatcta cgccgccgtt gacgccgtga
     1741 ggacggcgca gctcatacgc gcggggctcg cgcccgacgc cgagtccgac gccatagcgc
     1801 gccgcctcta cggcaacccg ctcgcgtggg catgcacgat gataacgctc ggcacaatct
     1861 tcctcctgca cacgctcttc ggcgtgcgcc tgcccgtgcg cgagctgctc cccgtcctgc
     1921 tcgtgctctt gggcgcctac atgctcttcg actacctgcg ctcgcgcgcg cggcgcgacg
     1981 tgccgaactt cgactcgatg aggcgcccgc cgtccgtggt cggcaacgcg acggcttcgt
     2041 tcccgtcgga ggtgaccagg ttcgggacgg gcgagctcgc cacgcaggtc acggcccggc
     2101 agggcggcgc gtggcccacg gagccgcggg tttaaatttt tctgttagaa tgagcgccgg
     2161 ggcttaagag gtttcgggcg aaggtcaagg agatttacaa gatgtcatca ttggtcatgg
     2221 ccgcgggcaa gtggggcggt atcgtcgcgc tcatcacact gctcatcgtt ctggtcaagc
     2281 agctcatcgc gctcgtcagc ttcctgatgt tcgccatcaa ggtcgcgctc atccttgcct
     2341 tcatagctct catggtcgtc ctcgccatgt tgatattcgg caggcgctca cgccgccgac
     2401 gcgaggccga ggggctttaa gcgccccctc ggccgacgaa ggccgaacag tttttctcat
     2461 aacgcccgcc gactgaaacc gtgctccggt cagtcggcgg gcgtttttcg gccgtaaaca
     2521 gcgccggccg gccccggccg actgtacggc tccgctccga acggtttgca atctcccgcc
     2581 ctctgtgtta ggttacggcc ccttgtgcag ccctagctag ctagcccgag ctaaagcacc
     2641 accaagatcg ggcctcgcgg gaagcacctt caggtagggt cacacacaaa gaaccctgga
     2701 aatttatttg ctttcgcact cgtcgccttc tttcggcgga aagtgccttt cgcgcccatc
     2761 cgtgtgctct cccccatgaa agccacgcgg aaggggagcc caaggagcac acaccgatga
     2821 aacgagacga gcgtctttac gcttttatcg tcgcacacac ctcgcgttcg cgttcccgca
     2881 ttcgccgcat atccatacac aagcgctggc tcaaggcctc gggcgtccta gccgcgctcg
     2941 tgctctgcac ggcgctctac ggcctctacg gcctcacgca gcaggccgcg cacatgcgca
     3001 tagaggagga gaacgagcgc ctgcggctgg agaacgagcg ccagcgccag cagctcaaga
     3061 agttagagaa ccgcgttgac gcgatagagg acgcctcgcg ccgcctctcg gagatttccg
     3121 gcgtatcgca cgaggaggaa ggcacggacg cgctcggcgc aggcggcccc tggcttaacc
     3181 tcgacgcggc ggccgtctcg gcgctcgaag cgcgcgccgc gcacctcgaa agcgacctga
     3241 gggcgcacga ggccgcgctc agggagcgcg cccgcgtgcc ttcgatctgg ccgattgagg
     3301 gcggcgaagt cactgacagc tacggggttc gcggcaaccc gttcggcggc ggctcctccg
     3361 agtttcacct gggccaggac attgccgcgc cgcgcggcac gcccgtcgtg gccgcggccg
     3421 acggcgtcgt cgtcaaggcc gactggcaga gcggctacgg ccagatcgta atcctcgacc
     3481 acggcaacgg gctgacgacc cactacgcgc acctctcgaa aatcgaagtg actgaaggtc
     3541 aagagcttac gcggggctcg cagttgggcc aggtcggctc gaccgggcgc tcgacggggc
     3601 cacacctcca ctacgaggtg cgcatcggcg acgtggccgt aagcccgctg cactacctgc
     3661 cggcccgata ggctcaggcg gcgccgccgc ggcggcaagt gcttgcagcg gagtattttg
     3721 tgcttgacag ccggcgggct ttcgcttagt atgcgccgtc gctctgaaga gcgcaaggcg
     3781 acttaaagtc gctgctttgt taggtttgca agctttcggc aatgaagtct cagtcggttt
     3841 tagtacctgt ccgctttgga tgaactggcg agcgcgccct aagcgcgttg gaggtcatcc
     3901 ggggcgggct tttttgttgg agttttcggg tgcgcccgtg cttgcagggc gcgcgccggc
     3961 tctttgaggt caactctgcg ggtggtctcg ggcctgaaac ggcgcggggc tggccctttt
     4021 caccgaatcg ttaggaggat tcgacagcta tgcctagaat taccggtaag gtcaagtggt
     4081 tcaacaacgc gaagggctac ggcttcatcg agcagcccgg ctcttccgac atcttcgttc
     4141 actacagcgc catacagggc gacggcttca agaccctcga ggaggggcag accgtcgagt
     4201 tcgaagtgac gcaggggccg aaggggccgc aggccgagaa agtgatcaag atgtaatctc
     4261 cccgacgttg ttcagctttc gttgaaggcc actgaccgct tccgggctcc tcgctacaga
     4321 gccggcaagc gcaaaggagc agaaaagcaa ggcactcaag aaagcaagaa agcagaaggc
     4381 agtcaggacc ggataggtcc tgactgcctt ctgctttctg ccttcttttt tacttttcgg
     4441 ccttcgcttt gaagctcacg cgcccctcgt ggacggcgac ggagaagtgg acgcgctcgc
     4501 agccggcgcg gctcttgagc gcctcggact tctcggcgac catgcggtgg aagcgcggga
     4561 aggagagttc gtcggtcggc tcgccgcagc gcttcttggc ctcgacgagc gcgtggaaga
     4621 gcgttttgac ggtcgccacg tcgttgcgcg cgtcggcgca gacgaagacg gacggggcgg
     4681 cctgcggctg cggggccgga cggtgcgtgt ggcgcggcgc gtgcgggccg cgcccttcct
     4741 cgcgctcctg catggttctg cgccagagtt gcaggaaaga ggtgtaatgc gccgtgagcg
     4801 agttgtagcg gtagcgctgg gcgaaggtga gcgtgcggtc gtcggcaagg cgtttgatga
     4861 tggtctcgac gcgccccttc gtgtcgtaag gcggccgctt ggcggcgccg ttgaagtata
     4921 tgtcgaactc gaccttgagg cggcgtatgt cctcttcgag ccggcctagc tgctcgtcaa
     4981 cgctcggcgg cgtgtcgaag acgagcccct tcttctcgcg tcgggcatcg cgctccttcg
     5041 ccctgcgggc gaacttgttc tcgcgtattg acaagtgttt actctcctga ccggggcggc
     5101 aggggcggcc ggaagccgca gggccccgac ttctaatcta gggtttcggc tcagagggtg
     5161 tcaataagtt ttactgcggc ggccactgta tgaccttgcg gcgctctgcg ggcgtgggcg
     5221 acgaggaggg gggctgcggc tgttgtcggt ctgtggtggg ggcggagggg cgagccgggc
     5281 gcgtcgaagc gtcggggcgc gcggtgttgc tgtcgccgtc ggcgcgggct tcactgccct
     5341 gcccgtcggc gttcgtgttg gcggcgctct gctcgcgcgt ggcggcgtcg gttctgcggc
     5401 gggagcgctg cgggtcttcg ggctggccgc tttccgagat gacggcgggg acttgcggcg
     5461 cgttggcgag cgcggggtcg ggcgggatgt aatagggctg ccccgtcgtc gggtaaggag
     5521 cgacggcgcc cggaggcatc cccggaaatt gctgtgcgtc ggggagcggc gagggcgagg
     5581 cgagaggcga aggcgtgacg gcggcagcgg cctgcggcgt cgcgactgtt tgcagtgtgg
     5641 gcgtcggggc ggcttgcgga ggcgtgctcg cgacgcgcgc gcgtgagttg agccatgcgg
     5701 cgtagcccgc cacgccgcac gcgacgagca ggaggcccgc cccggccttc gcctgccatg
     5761 tgccgaagaa gcctcggccc gcgctggggt gcgacggcct ctggaagtcg ctcaggaacg
     5821 tgaagtcgtc gcggcgaccc gccgcgctct tcacgacctc ctccacctcg gcttcgacgg
     5881 ccgtatcggc gccgtcatct tcgggcgcag agtcgtctga gtcgtcgagg tcggcgggga
     5941 atctctcgat tgtgacggcg acgctacgcg cgacttcggc gcggcgcggc gcggcgctcg
     6001 cccgtgcggc ggccggcgcg ttcctgagca actcagcaac tccgccgaag ccgcgcgcct
     6061 cggccca
//
LOCUS       DASPKR010000122         4336 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_13739, whole genome shotgun sequence.
ACCESSION   DASPKR010000122 DASPKR010000000
VERSION     DASPKR010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4336)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4336
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13739"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1341
                     /gene="pnp"
                     /locus_tag="VD968_03540"
     CDS             <1..1341
                     /gene="pnp"
                     /locus_tag="VD968_03540"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: protein motif:HMM:NF008805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HYE13498.1"
                     /translation="VDALKKEIVESHPEDQPERRQMAKKVFDHLKEKIFREDILGNRR
                     RPDGRRFSEIRPIDVEVGWLPRVHGSALFTRGETQAIVTATLGTKDDEQFMDDLETGE
                     IKRRFLLHYNFPHYSVGEVGRFGSTSRREIGHGALARRALEPVLPSEEEFPYSLRIVS
                     DITESNGSSSMATVCGGSLSMMDAGVPIKAAVAGVAMGLVMEGNRYAILSDIAGAEDH
                     YGDMDFKVAGTRDGITALQMDIKIGGINAQIMAEALAQAKKGRLHILSVMEQAIREPR
                     EDLSPYAPRIITIKINPDRIRDVIGPGGKIIRSIVEETGAKIDVEDDGTVFIATADGE
                     AAQAAVARIRGLTAEAEIGETYLGTVSRIVDFGAFVEIFPGTDGLLHISEIAEHRVRD
                     VRDELKEGQQILVKCIGKEGNKIKLSRKAVLRDEKAKGGGQAQKAEAAGHGDND"
     gene            1595..2260
                     /locus_tag="VD968_03545"
     CDS             1595..2260
                     /locus_tag="VD968_03545"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HYE13499.1"
                     /translation="MRRQAFRPTAATLGLLLALAAPARAATITYTDVVQPAGTLGAAR
                     SASELRLRVVPQSGRVAPAESLTTPQTGSHQPAQEQQQSGQQPDTTTAQPGTVTVADP
                     ALQQSGGQVETVDLGDVTGTVCDCGEIPVPEVAKRGFPWWLGFAGVPLICVSGICFGG
                     EEECVVNCGGPTPTPTPEIPIPEPLTLVLFGTGLLALGAGARRRHGRRLLEDEAAAAA
                     EEV"
     gene            2268..3302
                     /locus_tag="VD968_03550"
     CDS             2268..3302
                     /locus_tag="VD968_03550"
                     /inference="COORDINATES: protein motif:HMM:NF019911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEGA domain-containing protein"
                     /protein_id="HYE13500.1"
                     /translation="MPTRTKVPAKAVRALTIAALLALLATASLPYAAHAKQKNRKNQP
                     TIGRIEVSTNPGGYPIYINGTPAGETTDYVRSIDLEPGAHTVEIVFPNNTRWQQTFQV
                     VTGRKYCIALNYRPSTISVQPLPTSPCPYPVNVTAPAQVGDGDIVTFTADVGYTGQSA
                     LNYTWTVSPPAARILTGAGTPTITVDSAGLGNRRLTAILVVDDGSGDRNCRQTAQAAT
                     AVTGIRPPEGPKRFDEFPSVAFDDDKARLDNLAIELQNNPGASGYIISYAGRRSRAGE
                     AERMNRRAAQYLTSTRGISAGRVVTINGGYRESNSYEIWIVPQGATPPAPTPTINPAD
                     VQPPGRRRRY"
     gene            3551..3715
                     /locus_tag="VD968_03555"
     CDS             3551..3715
                     /locus_tag="VD968_03555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13501.1"
                     /translation="MAEGEGSSNTGVVAILVIFLIVVLVALFAWRGGLFGGGKTDVNI
                     KVDAPAGSTK"
     gene            3862..>4336
                     /locus_tag="VD968_03560"
     CDS             3862..>4336
                     /locus_tag="VD968_03560"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Catalyzes a two-step reaction, first charging a
                     glycine molecule by linking its carboxyl group to the
                     alpha-phosphate of ATP, followed by transfer of the
                     aminoacyl-adenylate to its tRNA; Derived by automated
                     computational analysis using gene prediction method:
                     GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HYE13502.1"
                     /translation="MSAPNIETIVSLAKRRGFVFPSSEIYGGLGSAWDYGPLGVELAN
                     NIKRAWWRWLVYGRDDMEGLDSSIILNPLVWKYSGHEATFSDPLVDCRACKSRFRADK
                     LVEEFGGDAATLSDIKCPNCGKTDWTEPRPFNMMLQTRLGAVADDDPSALAYLRPE"
BASE COUNT          794 a         1511 c         1405 g          626 t
ORIGIN      
        1 gtcgacgccc tcaagaagga gatcgtcgag tcgcaccccg aggaccagcc cgagcgtcgg
       61 cagatggcca agaaggtctt cgaccacctc aaggagaaaa tcttccgcga ggacatcctc
      121 ggcaaccgcc gccgccccga cggccggcgc ttcagcgaga tccgccccat cgacgtcgag
      181 gtcggctggc tcccgcgcgt ccacggctcc gccctcttca cgcgcggcga gacgcaggcc
      241 atcgtcaccg cgacgctcgg cacgaaggac gacgagcagt tcatggacga cctcgagacg
      301 ggcgagatca agcgccgctt cctgctccac tacaacttcc cgcactactc ggtcggcgag
      361 gtcggccgct tcggctccac ctcgcgccgc gagatcggcc acggggcgct cgcgcgccgc
      421 gcgctcgaac ccgtgctccc ctcggaggag gagttcccgt actcgctccg catcgtctcg
      481 gacatcacgg agtcgaacgg ctcctcgtcg atggcgaccg tctgcggcgg ctcgctctcg
      541 atgatggacg cgggcgtgcc catcaaggcg gcggtcgcgg gcgtcgcgat ggggctcgtg
      601 atggagggga accgctacgc catcctctcc gacatcgccg gggcggaaga ccactacggc
      661 gacatggact tcaaggtggc cgggacgcgc gacggcatca ccgccctaca gatggacata
      721 aagatcggcg gcatcaacgc ccagatcatg gccgaggccc ttgcgcaggc caagaagggg
      781 cgcctccaca tcctcagcgt catggagcag gccatcaggg agccgcgcga ggacttgtcc
      841 ccttacgccc cgcgcatcat caccatcaag atcaaccccg accgcatacg cgacgtcatc
      901 gggccgggcg gcaagataat ccgctccatc gtcgaggaga ccggggcgaa gatagacgtc
      961 gaggacgacg gcacggtgtt tatcgccacg gccgacggcg aggccgcgca ggcggccgtc
     1021 gcgcgcatac gcggcctgac ggccgaggcc gagataggcg agacgtacct cggcaccgtc
     1081 tcgcgcatcg tggatttcgg cgccttcgtc gagattttcc ccggcaccga cggcctgctg
     1141 cacatctccg agatagccga gcaccgcgtc cgcgacgtgc gcgacgaact caaggagggg
     1201 cagcagattc tcgtcaagtg catcggcaag gagggcaaca agataaagct ctcgcgcaag
     1261 gccgtgctgc gcgacgagaa ggccaaaggc ggcggccagg cccagaaggc cgaggcggcc
     1321 ggccacggcg acaacgacta aacgccccga ctcggttaat tttctggcag aaaaagggtt
     1381 cgccccgcgg ggcggccctt tttttatctt gacaccgggg ccggggcgcg ggtttaatgt
     1441 gctgccgaaa ctggaatgta cgggccattc agcgtctctt ccctgtgcag agactccacg
     1501 gaagtctccc cgcaagtcgt tttgattgtg gatgcttaac gaagaagcgc ccgccccgcg
     1561 ttttctgagg ggaaccaagg aggacgaccc cacaatgagg cgtcaagctt ttcgccccac
     1621 ggccgcgacg ctaggattgc tgctcgcgct ggccgcgccc gcgagggccg cgaccataac
     1681 ctacacggac gtggttcaac cggccgggac cctcggcgcc gcgcgctcgg cctccgagct
     1741 gcgcctccgc gtagtcccgc agagcggcag ggtcgccccc gccgagagcc tcacgacccc
     1801 ccagacggga tcgcaccagc ccgcacagga acagcagcag tcgggccagc agcccgacac
     1861 caccaccgcg cagcccggca ccgtgacggt cgcagacccc gcgctccagc agagcggcgg
     1921 gcaggtcgag acggttgacc tcggcgacgt gaccggcacg gtctgcgact gcggcgagat
     1981 tccggtgcct gaagtcgcga agcgcggctt cccctggtgg ctcgggttcg cgggcgtccc
     2041 gctcatctgc gtctcgggca tctgcttcgg cggcgaggag gagtgcgtag tcaactgcgg
     2101 cgggccgacg ccgacgccca cgcccgaaat ccccatcccc gagcctctga cgctcgtgct
     2161 gttcgggact ggcctgctcg cgctcggcgc cggcgcgcgc cgccgccacg gccgcaggct
     2221 gcttgaggac gaggctgcgg ccgcggccga ggaggtctaa gcgtctcatg ccgacacgaa
     2281 cgaaagtccc cgcaaaggcc gtccgcgcgc tgacgatagc ggcgctgctc gcgctcctgg
     2341 cgaccgcctc gctcccatac gccgcgcacg ccaagcagaa gaacaggaag aaccagccga
     2401 cgatagggcg catcgaggtc tcgacgaacc ccggcggcta ccccatctac attaacggca
     2461 cccccgccgg cgagaccacg gactacgtgc gctccataga cctcgagccg ggcgcgcaca
     2521 cggtcgagat agtcttcccg aacaacacgc gctggcagca gaccttccag gtagtcacgg
     2581 gccgcaagta ctgcatcgcg ctcaactacc gcccgagcac gataagcgtc cagccgctcc
     2641 cgacttcgcc ctgcccgtac cccgtcaacg tcacggcgcc cgcgcaggtc ggcgacggcg
     2701 acatcgtcac cttcacggcc gacgtgggct acacgggcca gtccgcactg aactacacct
     2761 ggactgtgag cccgcccgcc gcgcgcatac tcacgggcgc aggcacgccg actatcaccg
     2821 ttgactccgc gggcttgggc aaccgccgtc tgaccgcgat actcgtcgtt gacgacggct
     2881 cgggcgaccg caactgccgt cagaccgcgc aggcggcgac cgccgtcacg ggcatacggc
     2941 cgcccgaggg gccgaagcgc ttcgacgagt tcccgtccgt ggccttcgac gacgacaagg
     3001 cgcggctcga caacctcgcc atagagcttc agaacaaccc cggcgcgagc ggctacataa
     3061 tctcctacgc gggccgccgt tcgcgcgccg gagaggccga gcgcatgaac cgccgcgccg
     3121 cccagtacct gacgagcacg cgcggcataa gcgcgggccg ggttgtgacg atcaacggcg
     3181 gctaccgcga gtcgaactcc tacgagattt ggatcgtgcc gcagggcgcg acgccgcccg
     3241 cgccgacgcc cacaatcaac ccggccgacg tgcagccccc cggccgcagg cggcgctact
     3301 gaggcggcgg agccgagaca gcagaggcgg aagagaagag cacgacttct cttccgcctt
     3361 ttcatttgct gcgtgtggca cggctttttc ttaaccaacg aaggaagcgc gcggcggcgt
     3421 actgttatca aacgtgtggg cgcgcacccg actaattttc gcagtgtgag agcttagtaa
     3481 cctcgcgttt ttaggtcgcc cgaccggcct ctcggcgggc gtcaaatttg agaaggaggg
     3541 ttttgcagac atggcggaag gcgaaggctc aagcaacacg ggagtcgtgg caatactggt
     3601 gatcttcctg atcgtcgtgc tggtcgcgct cttcgcgtgg cgcggcgggc tgttcggcgg
     3661 cggcaagacc gacgtgaaca taaaggttga cgcgcccgcc ggctcgacga agtaacggcc
     3721 gaaagtcatc aagcgggaag ccggagaggg gaggcggcgg ccgacggcgc ttagggtcgg
     3781 ccgcccgccc ccttcttttc atttaccgcg cgcggctgct aacatgcggg caaaccggcg
     3841 aacggccaac ggagaatagt cttgtccgca ccgaacatag aaaccatcgt gtcgctcgcg
     3901 aagcggcgcg gcttcgtctt cccctcgtcg gagatttacg gcgggctggg cagcgcatgg
     3961 gactacggcc cgctcggcgt cgagctcgct aacaacatca agcgcgcgtg gtggcgctgg
     4021 ctggtttacg gtcgcgacga catggagggg ctcgactcct ccatcatcct caacccgctc
     4081 gtctggaaat attccgggca tgaagcgacc ttcagcgacc cgctcgtgga ctgccgcgcg
     4141 tgcaagtcgc gcttccgcgc cgacaaactc gtggaggagt tcgggggcga cgccgcgacg
     4201 ctctccgaca tcaagtgccc gaattgcggg aagacagact ggacggagcc gcgccccttc
     4261 aacatgatgc tgcagacgcg gctcggcgcg gtcgcggacg acgacccgag cgcgctcgcc
     4321 tacctgcggc ccgaga
//
LOCUS       DASPKR010000123         7130 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_144246, whole genome shotgun sequence.
ACCESSION   DASPKR010000123 DASPKR010000000
VERSION     DASPKR010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7130)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7130
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144246"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2437
                     /locus_tag="VD968_03565"
     CDS             <1..2437
                     /locus_tag="VD968_03565"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HYR domain-containing protein"
                     /protein_id="HYE13503.1"
                     /translation="ATNGTIGDGQATGTITDTSVASPVIISELRTSGPDGSGDDFVEL
                     LNTTDSDITVSTLGGWSIVASGSGCSTTPAVVGVIPENAVIPARGNYLLAGPDYSLGA
                     VGAADAALSDIADDRNVGLFTTSDLSNVSSDTRLDAVGFGANTTGTCELLREGSNLPA
                     AMGSTAQHSFVRKVTLGQTHDTGDNSADFVLVSTSAPTAVGAGTPTLGAPGPEGTAGP
                     TGPVPCLAPTGSTLFARDLIEPSAGEDGAPNVVRDALAVGPNASFGTIEFRRKFTNNT
                     GAALTTLRFRVVSLSTAPASAGSADLRALDSSTIVVATAGGPVTVQGTTLGQPTPQAS
                     GGGVNSTLAVGSVTTATPIPSGSSVSIRAVFGVEQTGDYDIAFVLESTPGSGKDTWKL
                     AGHTEDGGHTDRGCNRKPVANAGADQSEECSGGQAMVELDGSGSTDPDGDTPLTYDWS
                     EGTTPLGSGEMLSVSLSYGSHTITLTVTDPSGDSSQDTVTVNVIDTTDPDVTAPPGIT
                     VNTGPGATSCGVEIPVSDLGEGSATDGCEGSLPVERTGVPSGNFYPVGPTTITYKAVD
                     AAGNEGTATQTVTVIDNTPPVVSPPASIQTTSDPGSCSADVDPGTATAMDNCAVQSIS
                     GTRSDNQALEDPYPVGTTTITWKATDVHGNEATATQTVTVTDDQAPTLNSSVAVTTMG
                     PPFNHAMVNVGLSGTATDNCPGTVGMHVSVFSDEDDGAGPHSPDAIDIGIGSLKLRRE
                     RDGDLNGRVYLVVVKATDASNNTTVSCNTVTVPLSNSAPSLSSVTAQASAAAAFCSAN
                     GGAPPAGYFAVGP"
     gene            2596..5331
                     /gene="polA"
                     /locus_tag="VD968_03570"
     CDS             2596..5331
                     /gene="polA"
                     /locus_tag="VD968_03570"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HYE13504.1"
                     /translation="MPSKKASKPKEPTERVFLIDSFSHIFRAFFAPMGGRSEPLTTSG
                     GQVTQAVFVFTNMLRKLLADEKPHYIAAVFESGEPTFRHEMNVGYKANRIAPPEDLES
                     QIPYIIRVCEAYNVPILNAPGFEADDVIGALALQAAERGLQAVIVSNDKDMCQLVRDP
                     WVVCMRNNSQNVKRKEPVPPVEWCDEAWVEQRFGVPPSQIVDLLGLMGDSVDNIPGAP
                     GIGAKGAVQIVKQFGSVEQALERWEDVKHKTYRESLRDNRELILQSKELATIRTDVNI
                     KLDLDRLRCKPPDRAAAYKLFRELEFQSLTREFADAAAEAGVTVSERNYKRVRKASEL
                     ESLVRKLWDADHWGFAVAGSTPPGAGQQVSVRSAEPPRGIAISYAPHTSHYVNFEEFE
                     GGREQAVAMLGDVLGNGLLSKSVHDLKRAAALLSAVGVEVEGVTDDTLLAAYLLDPVR
                     SRYDLGDLAREAVNADGWTEPAAEAWSADDWRAAEAADYTAQAADVLHGRVLEHGLEA
                     IYNEIEIPLAPLLYRIERAGLRVDTSVLGELSAFFGAELEKLTTQIYKAAGREFKINS
                     PKQVGEVLEELNISTGRKTATGQISTNRAVLEELAQSYELARLIIEFRELDKLKATYT
                     DALPPLIGPDGRIHSELNQTVTATGRLSSSNPNLQNIPIRTELGRRIRRAFVPDAGKV
                     FVAADYSQLELRLLAHITRDEHMLDAFQKGEDIHERTARLVFGAKTKEELKEKRRFAK
                     IVNFAIAYAVEPFGLSQRVGITRKEAKQVIEDYYKTYTGIRRFMEEVPERTRETGVVR
                     SLYGRIRPIPAINDRNANIRFRAEREAINMPIQGTASDIVKIAMLKSDEALRREGLEA
                     QMVMQVHDELLVEAPRKEAPRVAEILKREMETAVELDVPLEVEVGTGGNWMDVKK"
     gene            5350..>7130
                     /locus_tag="VD968_03575"
     CDS             5350..>7130
                     /locus_tag="VD968_03575"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE13505.1"
                     /translation="MPEERDDDGRVVHSRPGGEAGEAARAVSAVESRLSAAFAGARGG
                     LWRALLPLVVGFALIVSLVYLLGRLSRETVSDVRFDTQGEERALSGTLRILLDMRLAL
                     SRLDTEARLRARSEAGTRSVILPPSDLRLRTERGAVEELLPEFDRLPLKDEALKRDVR
                     ERVVGYVEITRDLERYSLEGFEAYRELDGRLRTLISGVTEDRQATEIRRDRTLEEVRG
                     EIEFLMWLAVVTGLVVATATFLEVWRRFRQMRRGFEALRRERQFSAQMIEGMPSAVAA
                     LDGDDRIRSANASFFDAFPGAHLGASIHDKLAPPEGLKLLAAATSSRVSRSTYRGRWR
                     LPGREEGRERVFDVYSSPLEIEGEDGQLLTLVDVTEAAEAEQELRRQEALAAVGQAAA
                     QVAHEIKNPLGSIRLGVAMLRDMTKDREAITTIDLVERGIEHLSKLTLDVTQFSRRRQ
                     LAPTDVDLHDLLAESLDLVTDKLRERQTPVERDFRAEPARGHWDEDQLRQVFVNLLAN
                     AADASPPGSPVTVATERTHLRTPDRRQDGEGDALSPGVRVVITDRGPGMDGPTRARIF
                     EPFFTTKKKGTGLGLAIAKQIVEQHGGT"
BASE COUNT         1260 a         2531 c         2336 g         1003 t
ORIGIN      
        1 cgcgacgaac ggcacgatag gcgacgggca ggcgacgggc acgataaccg acacgtcggt
       61 cgcgagcccc gtcatcatct cggagcttcg cacgagcggc cccgacggct cgggcgacga
      121 cttcgtcgag ctgctcaaca ccaccgacag cgacataacg gtctcgacgc tgggcggctg
      181 gtctattgtc gccagcggct cgggctgctc gacgacgccc gcggtggttg gcgtcatccc
      241 agaaaacgcg gtcatcccgg cgcgcggcaa ctacctgctc gcggggcctg attacagcct
      301 cggcgccgta ggcgctgccg acgccgcgct ctccgatatt gcggacgacc gcaacgtcgg
      361 cctcttcacc acgtctgacc tgtcgaacgt aagctccgac acgcggctcg acgccgtcgg
      421 cttcggcgct aacacgacag gcacgtgcga gctgctgcgc gagggctcga acctgccggc
      481 ggcgatgggc agcaccgcgc agcacagctt cgtgcgcaag gtgactctcg gccagacgca
      541 cgacaccggc gacaactcgg ccgacttcgt gctggtctcg accagcgcgc cgacggccgt
      601 cggcgccggc actccgacgc tcggggctcc tgggccggaa ggcacggcag gcccgaccgg
      661 cccggtgcct tgcctcgccc cgacgggctc gaccctcttc gcgcgcgatc tgattgagcc
      721 gagcgcgggc gaagacgggg ctcctaacgt cgtgcgcgac gctctggcgg tcgggccgaa
      781 cgcctcgttc ggcacgatag agttccgccg gaagttcacg aacaacaccg gcgctgcttt
      841 gacgacgctg cggttccgcg tcgtcagcct ctcgaccgct ccggcctcgg ccggctcggc
      901 agacctccgc gcgctcgact cgtccacgat cgtcgtagcg acggcgggcg ggcctgtgac
      961 cgtacaaggg acaactctcg ggcaacctac cccgcaggct tccggcggcg gcgtcaactc
     1021 gacgctcgcc gtcgggagcg tgacgacggc gacgcccatc ccgtcgggct cctccgtcag
     1081 catccgcgca gtgttcggcg tggagcagac gggcgactac gacatagcgt tcgtgctcga
     1141 atccacgccg ggctcgggca aggacacctg gaagctcgcc ggccacacgg aggacggcgg
     1201 ccacaccgac cgcggctgca accgcaagcc ggtcgcgaac gccggggccg accagtccga
     1261 ggagtgctcg ggcgggcagg cgatggtgga gctcgacggc tctggctcga cagacccgga
     1321 cggcgacacg cccctgacct acgactggtc ggagggcacg acgccgctcg gctccggcga
     1381 gatgctcagc gtgagcctct cctacggctc gcacaccata acgctcacgg tgaccgaccc
     1441 gagcggcgac tcgtcgcagg acacggtcac cgtcaacgtc atagacacga ctgaccccga
     1501 tgtgacggcc ccgccgggca taaccgttaa tacgggcccc ggcgccacgt cttgcggcgt
     1561 cgagataccc gtctcggatc tcggcgaagg gtcggcgacg gacggctgcg agggcagcct
     1621 ccccgtcgag cgcacgggcg tcccgtcggg gaacttctac cccgtcggcc cgaccacgat
     1681 cacctacaag gcggttgacg ccgccggcaa cgaaggcacg gccacgcaga ccgtgacggt
     1741 cattgacaac acgccgccgg tcgtgtcgcc gccggccagc atacagacca cgagcgaccc
     1801 cggctcctgc tcggcggatg ttgaccccgg cacggccacg gcaatggaca actgcgccgt
     1861 ccagtcaatc agcggcacgc gcagcgacaa ccaggcgctc gaggacccgt accccgtagg
     1921 cacgacgacc atcacgtgga aggccacgga cgtgcacggc aacgaagcga cggccaccca
     1981 gaccgtcacg gtcacggacg accaggcgcc cacgctcaac tcgtccgtcg ccgttacgac
     2041 gatggggccg ccgttcaacc acgcgatggt aaacgtgggc ctctcgggca cggccaccga
     2101 caactgcccc ggcactgtgg ggatgcatgt ctccgtcttc tccgacgagg acgacggcgc
     2161 cggcccgcac tcgcccgacg cgattgacat aggcatcggg tcgctcaagc tccgccgcga
     2221 gcgcgacgga gatttgaacg gccgcgtcta tctagtcgtc gtcaaggcga ccgacgcctc
     2281 aaacaacacg accgtgagct gcaacaccgt cacggtcccc ttgagcaaca gcgcgccctc
     2341 gttgtcgtcc gtgacggcgc aggcctcggc cgcggccgcc ttctgctcgg ccaacggcgg
     2401 cgcgccgccc gcgggctact tcgcagtcgg cccgtagtct gacgaaccga ccgcgggcgg
     2461 cgcgcaccca cgccgcccgc gcctgacagg ccggggccgc ggcactcgca atgaagtgcc
     2521 gcggccccgg cctctttcta ccggcacttg ctaatacttg tcacccgtcc gcctcattcc
     2581 ttatcatcaa agcaaatgcc gtcgaaaaaa gcatcgaagc cgaaggagcc gaccgagcgc
     2641 gtcttcctta tagattcgtt ctcccacata ttccgcgcct tcttcgcgcc gatgggcggg
     2701 cgctcagagc cgctgacgac gagcggcggg caggtcaccc aggccgtatt cgtcttcacg
     2761 aacatgctga ggaagcttct ggcggacgaa aagccccact acatcgccgc cgtcttcgag
     2821 tcaggggagc cgacgttccg ccacgagatg aacgtcggct acaaggccaa ccgcatcgcg
     2881 ccccccgaag acctcgaatc gcaaatcccg tacatcatcc gcgtctgcga ggcgtacaac
     2941 gtcccgatac tcaacgcccc gggcttcgag gccgacgacg ttatcggcgc gctcgccctc
     3001 caggccgccg agcggggcct tcaggccgtc atcgtctcga acgacaagga catgtgccag
     3061 ctagtgcgcg acccgtgggt cgtctgcatg cgcaacaact cgcagaacgt gaagcggaag
     3121 gagcctgtgc cgcccgtaga gtggtgcgac gaggcgtggg tcgagcagcg cttcggcgtg
     3181 ccgccctcgc agatcgtgga tttgctgggc ctgatgggcg actcggttga caacatcccc
     3241 ggcgcgcccg gcataggcgc aaagggcgcc gtgcagatag tcaaacagtt cggctcggta
     3301 gagcaggcgc ttgagcgatg ggaggatgtc aagcacaaga cctaccgcga gagtctgcgc
     3361 gacaaccgcg agctgatact ccagtcgaaa gagctggcga ctattcgcac ggacgttaac
     3421 atcaagctcg acctcgaccg cctgcgctgc aagccgcccg accgcgccgc agcctacaag
     3481 ctcttccgcg agctcgaatt ccagtccctg acgcgcgagt tcgccgacgc cgcggccgag
     3541 gccggcgtca cggtgagcga gcgtaactac aagcgggtga ggaaggcgtc cgagcttgag
     3601 tcgctcgtcc gaaagctctg ggacgcggat cactggggct tcgccgtcgc gggctcgacg
     3661 ccgcccggcg ccggccagca ggtctccgtc cgctccgcgg agcccccgcg cgggatcgcc
     3721 atctcctacg cgccgcacac ctcgcactac gtcaacttcg aggagttcga gggggggcgc
     3781 gagcaggccg tcgccatgct cggagacgtt ctcgggaacg gcctgctctc gaagtcagtc
     3841 cacgacctga agcgcgccgc ggcgctgctc tcggcggtcg gcgtcgaggt cgaaggcgtc
     3901 acggacgaca cgctgctcgc cgcctacctg ctcgacccgg ttcgcagccg ctacgactta
     3961 ggcgacctcg cgcgcgaggc ggtgaacgca gacggctgga ctgagcccgc cgccgaagcg
     4021 tggtcggccg acgactggcg cgcggccgag gccgccgact acacggcgca ggctgccgac
     4081 gtgctccacg gccgcgtgct cgaacatggc ctcgaagcca tctacaacga gatagaaatc
     4141 ccgctcgctc cgctcctcta ccgcatcgag cgcgcgggcc tgcgcgttga cacctccgtg
     4201 ctcggggagc tttcggcctt cttcggcgcg gagctcgaga agctcacgac gcagatttac
     4261 aaggccgccg gccgggagtt caagatcaac tcgcccaagc aggtaggcga ggttctcgaa
     4321 gagctgaaca tcagcaccgg ccgcaagacc gccacgggcc agatttcaac gaaccgcgcc
     4381 gtcctcgaag agcttgctca atcctacgag ctggcgcgac taatcatcga gttccgcgag
     4441 ctggacaagc tcaaggccac ctacacggac gccctcccgc ccctcatcgg ccccgacggg
     4501 cgcatacatt cagagttaaa tcagacggtg actgcgaccg ggcggctctc ctcctcgaac
     4561 cccaacctcc agaacatccc catacgcacg gagctgggcc gacgcataag gcgggcgttc
     4621 gtccctgacg ccggcaaggt cttcgtcgcg gccgactact cgcagctcga gcttcggctg
     4681 ctagcgcaca tcacgcgcga cgagcacatg ctcgacgcct tccagaaggg cgaggacata
     4741 cacgagcgca ccgcccgcct cgtcttcggc gcgaagacga aggaggagct aaaggagaag
     4801 cgccgcttcg ccaagatagt caacttcgcc atcgcctacg ccgtcgagcc cttcggcctc
     4861 tcccagcgcg tcggcatcac gcgcaaggag gccaagcagg tcatcgaaga ctactacaag
     4921 acctacaccg gcatccggcg cttcatggag gaggtgccgg agcggacgcg cgagaccggg
     4981 gttgtgcgct cgctctacgg ccgcatacgc cccatacccg caatcaacga ccgcaacgcc
     5041 aacatacgat tccgcgccga gcgcgaggcc atcaatatgc cgatccaagg aaccgcgagt
     5101 gacatcgtaa agatcgcgat gctcaaatcg gacgaggcgc tcaggcgcga ggggctggag
     5161 gcgcagatgg tcatgcaggt tcacgacgag ctgctggtgg aggcgccgag gaaggaggcg
     5221 ccgcgcgtcg ccgagatact caagcgcgag atggagacgg cagtcgagct ggacgtgccg
     5281 ctcgaagtcg aggtcggcac gggcggcaac tggatggacg tgaagaagta gttccgggct
     5341 caggcactca tgccagaaga gagggacgat gacgggcgcg tggttcacag ccggccgggt
     5401 ggcgaggccg gggaagcggc gcgcgccgtc agcgccgtcg agtctcgcct gtccgcggcc
     5461 ttcgcgggcg cgcgcggcgg cctgtggagg gcgctcctgc cgctcgtggt cggcttcgcg
     5521 ctcatcgtct cgctcgtcta tctgctaggc cgcctgagcc gcgagaccgt cagcgacgtg
     5581 cgcttcgaca cgcagggcga ggagcgcgcc ctgtcgggca cgctgcgcat cctgctcgac
     5641 atgcggctcg ccttgagccg gctcgacacc gaggcgcgcc ttcgcgcgcg ctccgaggcc
     5701 gggacgcgca gcgtcatact cccgccgtcg gacttgcgcc tccgcaccga gcgcggcgcc
     5761 gtcgaggagc tgctgcccga gttcgaccgc ctgcctctga aggacgaggc gctcaagcgg
     5821 gacgtgcgcg agcgcgtcgt cggctacgtc gagattacga gagacctgga aaggtactcg
     5881 ctcgaaggct tcgaggctta tcgcgagctt gacgggcgct tgaggacgct catctcgggc
     5941 gtgacggagg acaggcaggc gacggagatt cgccgcgaca ggacgctcga agaggtgcgc
     6001 ggcgagatag agtttctgat gtggctcgcc gtcgtgacgg ggctcgtcgt cgccaccgcc
     6061 accttcctcg aagtctggcg gcgcttccgg cagatgcggc gcgggttcga ggcgctcagg
     6121 cgcgagcggc agttcagcgc gcagatgatc gaaggcatgc cgagcgccgt cgccgccctc
     6181 gacggcgacg accgcatacg ctcggccaac gcctcattct tcgacgcctt ccccggcgcg
     6241 cacctcggcg cctccatcca cgacaagctc gcgccgcccg agggcctgaa gctactcgcc
     6301 gccgccacgt cgtcgcgcgt ctcgcgctcg acctaccgcg ggcgatggcg cctgcccggc
     6361 cgcgaggagg gccgagagcg cgtcttcgac gtttactcgt cgcctttgga aatcgagggc
     6421 gaggacggcc agctcctgac gctggtggac gtgaccgagg cggccgaggc cgagcaggag
     6481 ctccgccggc aggaggcgct cgccgccgtc gggcaggcgg ccgcgcaggt cgcgcacgag
     6541 ataaagaacc cgctcgggag catacggctg ggggtggcga tgctgcgcga catgacgaaa
     6601 gaccgcgagg ccatcaccac cattgacctg gtcgagcgcg gcatcgagca cctgtcgaaa
     6661 ctcacgctcg acgtgactca gttctcgcgc cgccggcagc tcgcgcccac ggacgttgac
     6721 ctccacgacc tgctcgccga gagcttagac ctcgtcaccg acaagctgcg cgagcggcag
     6781 accccggtcg agcgcgactt ccgcgccgag cccgcgcgcg gccactggga cgaggatcag
     6841 ctccgccagg tgttcgtcaa ccttctcgcc aacgccgccg acgcgagccc gcccggctcg
     6901 cccgtcaccg tcgcgaccga gcgcacgcac ctgcgcaccc ccgacaggcg ccaggacggc
     6961 gagggcgacg cgctctctcc cggcgtgcgc gtcgttataa cagaccgcgg ccccggcatg
     7021 gacgggccga cgcgcgcccg aatattcgag ccgttcttta cgacgaagaa gaaggggacg
     7081 gggctcggcc tcgccatcgc caagcagata gtcgagcagc acggcggcac
//
LOCUS       DASPKR010000124         5018 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1695495, whole genome shotgun sequence.
ACCESSION   DASPKR010000124 DASPKR010000000
VERSION     DASPKR010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5018)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5018
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1695495"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            810..2549
                     /locus_tag="VD968_03580"
     CDS             810..2549
                     /locus_tag="VD968_03580"
                     /inference="COORDINATES: protein motif:HMM:NF019351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HYE13506.1"
                     /translation="MPKLSKTRLKEIENAAKNRREIVEARLSRRDLMRMGLLTAGGML
                     VAKSGLSARAVSAAGTPLGPPVGPTTTPFVDDLPIPPVAQGSTTPLTPTPSIVPLPGE
                     SRVEAHQRYNEFHPQKYYEFPVREGLHKFHRDMSAQTIWGFNGITPGVTYHAYYNEPI
                     LVRLRNELPAEHVGYGDPTISTHQHNGHTPSASDGFPTNYNYPGSFYDYHYPNVRAGV
                     DAYGPGGDERETMNFLWYHDHRMDFTAQNSYKGLAGFYLLFDERDSNNENDTNPNAFQ
                     LPSGQYDVPLFLADKVFDSAGNLFFDLFNLDGILGDKFTVNGKIQPVFRVARRKYRFR
                     ILDGGPSRFYQLYLTNGTRSNVKPPMTMISNDGNLLPFPIPVNFVRLSVAERRDVIVD
                     FTNCQIGDEIYLENRLVQDDGRGPDEDLEARTKLMKIIVDRDAPDPSRIPAQFRSLPT
                     IPDTEVKRTRTWRFERQNGQWAVNGQFFNEEIPRAVIPKGDAEEWVLQNNSGGWHHPI
                     HIHFEEFQILSRNGRPATGIEVARKDVVELGPNEEIRIRMRFRDFVGKYVMHCHNTLH
                     EDHAMMIRWDIQG"
     gene            2566..3222
                     /locus_tag="VD968_03585"
     CDS             2566..3222
                     /locus_tag="VD968_03585"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HYE13507.1"
                     /translation="MERRTLLKRLGHASLAAAPAIVTASASARAQVSPAPEKKRGPRD
                     GYFPDVVLRTHENKQVRFYEDLIQGRIVVINMFYARCEGICPGMTANLVRVQRLMSDR
                     IGRDIFMYSITLKPGQDSPAVLADYARAYKIGPGWQLLTGAPSDIEALRRKLGFVDPD
                     PVLDRTLSTHTGVVKYGNETLDRWGACPAMKAPQQIVKTILIADHPKNLPFYKGGARS
                     "
     gene            3219..4241
                     /locus_tag="VD968_03590"
     CDS             3219..4241
                     /locus_tag="VD968_03590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HYE13508.1"
                     /translation="MKRIVTAVRLLVALAALLTASTAFRAQAQTSTTDTTNDAGNGPV
                     VGDGSEGLAFDGTHLWVASQFGDTLTKIHAATGTVVGTFKVGARPLGVAFDGTHVWVS
                     SFLDNTVTKLEAGKGAVVGVYPVGNGPGGVLFDGAYVWVANRKSGTVSKLDVRGTLVG
                     TFPVGRRPVSMAYDGSSVWVANSSSNNVTKLDAASGVALGTFPVGDGPFGIAFDGTDL
                     WVSNFFSQSVMKLRRLDGALVGTYKTGDGPSAVFYDKAVGIIVVNNGSNNLMQLRQSD
                     GVAVSTSATTTGPINVAFDGTNLWVVSTGSNRMTVKNTYPSSGTPDASPGVPRTLDTA
                     VVSTTK"
     gene            4414..>5018
                     /locus_tag="VD968_03595"
     CDS             4414..>5018
                     /locus_tag="VD968_03595"
                     /inference="COORDINATES: protein motif:HMM:NF039593.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HYE13509.1"
                     /translation="MRTGTGLSIRTLTRFSVVAAFLLLSAHAAEVAGQPTHVGHGRAS
                     QARRDARPSEKRSKGARAAATPKATPRPVVYSCPMHPEVTSGAPGSCPKCRMDLEAKA
                     PDGRDGGGSVGAPSAASHDAAQLSQPKLSAARIRQVKVYGRQGESLNLYDDLVRGRTV
                     AFNFITVPCAAPCEQAAVFRETRRRMGERLGPYVKLITVVAG"
BASE COUNT          953 a         1724 c         1554 g          787 t
ORIGIN      
        1 gggggcgaca cgcgcgctgc gcgcccccag attgcaagtt cactcttcga cgatgacaaa
       61 gggccggagt cgcctgtaaa cgagcccgac gcctcagacg agtacccgcc tcggcgaaat
      121 gtgtttcagg gtgaaacacg aaagcgcgcg tggtgatgcg cggtgaaaca cccgcggagg
      181 cgcgaaggtt cgtccgacgt gagcccgggg ttgatgtgcg acgaagttcc gcaagaatat
      241 gaaatcgaat tgtcgaaact gaataacctc gcgtcacagg cacgcgcctt gcttattagc
      301 ccgcggccag agcaattctg ccggtgttta tttccggcct tcgcggttgc ggcgtccgcg
      361 ccgccagcgc gaactcacgt tcccggatta aacagttgac gtatctctcc gccgagacgc
      421 ctcgtcggtg gtcgaacctc gccgggcagc gacgctcagg gctgcgtcgt aaagcaaacg
      481 gcccggcgag gttttcactg aggtgagctt cgccgagggt tgtccaagtg tgcccgcgtc
      541 gccgccgcgc ggagccggaa gacgcacgcg acgacattta agtcagcccc gttgtatttc
      601 gcgagccgtt ctccgcactg ttactacgtt accacggcgc gcagatgcac gaccgccacc
      661 gtcagtcgcg cgcgactacg cggccacact cataacacct gaatttagag cgaggcggct
      721 ggaaaaatct tcgagcacgc cttcatcaag acaccccgag agattgactc agtttgtttc
      781 gacggaatcg agaggagact gaacctagca tgccgaagtt gtcgaaaacc cgcttgaagg
      841 agatcgagaa cgccgccaag aaccggcgtg agatcgtcga agccaggctc agccggcgcg
      901 acctgatgag gatgggcctg ctcacggcgg gcggcatgct cgtcgccaag tccggcctga
      961 gcgcgcgcgc cgtgtccgcc gccgggaccc ccctcgggcc cccggtcggc cccacgacta
     1021 ccccgttcgt tgacgatctg ccgatcccgc ccgtcgcgca aggctcgacc acgccgctca
     1081 cgccgacgcc gtccatagtg ccgctgccgg gcgagagccg cgtggaggcg caccagcgct
     1141 acaacgagtt ccacccccag aagtattacg agttccccgt gcgcgagggg ctgcacaagt
     1201 tccaccggga catgtcggcg cagaccatct gggggttcaa cggcatcacg cccggcgtca
     1261 cctaccacgc ctactacaac gagccgatcc tcgtccgcct gcgcaacgag ctgccggccg
     1321 agcacgtcgg atacggcgac ccgaccatct cgacgcacca gcacaacggc cacactccct
     1381 cggcgtctga cggcttcccg actaactaca actacccagg cagcttctac gactaccact
     1441 acccgaacgt ccgcgccggg gtggacgcct acgggccggg cggcgacgag cgcgagacga
     1501 tgaacttcct gtggtatcac gaccaccgca tggacttcac cgcgcagaac tcctacaagg
     1561 gcctcgccgg cttctacctg ctcttcgacg agcgcgactc gaacaacgag aacgacacca
     1621 acccgaacgc cttccagctg ccgagcgggc agtacgatgt gccgctcttc ctcgccgaca
     1681 aggtcttcga cagcgccggc aacctcttct tcgacctctt caacctcgac ggcattctcg
     1741 gcgacaagtt caccgtcaac ggcaagattc agcccgtctt ccgcgtggcg cggcgcaagt
     1801 accgcttccg catcctcgac ggcggcccct cgcgcttcta ccagctctac ctgacgaacg
     1861 gcacccgcag caacgtcaag cctccgatga cgatgatctc gaacgacggc aacctgctgc
     1921 ccttccccat ccccgtcaac ttcgtccgcc tgagcgtcgc cgagcgccgc gacgtgattg
     1981 tggacttcac caactgccag atcggcgacg agatttacct ggagaaccgt ctggtgcagg
     2041 acgacgggcg cggtccggac gaagacctcg aagcgcgcac caagctcatg aagatcatcg
     2101 tcgaccgcga cgcgcccgac ccgagccgca tcccggctca gttccgctcg ctgcccacca
     2161 tcccggacac cgaggtcaag cggacgcgga cgtggcgctt cgagcggcag aacgggcagt
     2221 gggccgtcaa cggccagttc ttcaacgagg agatcccgcg cgccgtcatc ccgaagggcg
     2281 acgccgagga gtgggtcttg cagaacaatt ccggcggctg gcaccacccg atccacatcc
     2341 acttcgagga gttccagatt ctctcgcgca acgggcggcc cgccaccggg atcgaggtcg
     2401 cgcgcaagga cgtggtcgaa ctggggccga acgaggagat caggattcgg atgcgcttcc
     2461 gcgacttcgt cggcaagtac gttatgcact gccacaacac cctccatgag gatcacgcga
     2521 tgatgatccg gtgggacatt caaggctaga gggaggcgtc gaacgatgga gagaagaact
     2581 ctactcaaga gactggggca cgcctcgctg gccgccgcgc cggcgatagt cacggcttcg
     2641 gcctcggccc gcgcccaggt ctcgcccgcg ccggagaaga agcgcgggcc gcgcgacggc
     2701 tatttccccg acgtggtgct gcgcacgcac gagaacaagc aggtcaggtt ctacgaggac
     2761 ttgattcagg gccgcatcgt cgtcatcaac atgttctacg cgaggtgcga aggcatctgc
     2821 cccggcatga cggcgaacct cgtcagggtg cagcggctga tgagcgaccg catcgggcgc
     2881 gacatcttca tgtactccat cacgctcaag ccgggtcagg attcgcccgc cgtgcttgcc
     2941 gactacgcgc gcgcttacaa gatcgggccg gggtggcagt tgctgacggg cgcgccctcg
     3001 gacatcgagg cgctccgccg caagctcggc ttcgtcgacc cagacccggt gctcgaccgc
     3061 acgctctcga cgcacaccgg cgtcgtcaaa tacggcaacg agacgctcga ccgttggggc
     3121 gcttgcccgg ccatgaaggc cccgcagcag atcgtcaaga ccatcctgat tgcagaccac
     3181 ccgaagaact tgccctttta caaaggagga gcccgctcat gaaaagaatc gtaacggcag
     3241 tccgcctgct cgtcgcgctg gcggcactgt tgaccgcctc gacggcgttc cgggctcagg
     3301 cgcagacctc gacgaccgac acgaccaacg atgccggcaa cggccccgtc gtcggcgacg
     3361 gctcggaggg cctcgccttc gacggcacgc acctctgggt ggcgagtcag ttcggcgaca
     3421 cgctcacgaa gattcacgcg gcgaccggca cggtcgtcgg caccttcaag gtcggcgctc
     3481 gcccgctcgg cgtggccttc gacggcacac acgtctgggt gagcagcttc ctcgacaaca
     3541 cggtcaccaa gttggaggcc ggcaagggcg cggtggtcgg cgtctacccg gtgggcaacg
     3601 gccccggcgg cgtcctcttc gacggcgcat acgtctgggt ggcgaaccgc aagagcggca
     3661 ccgtctcgaa actcgacgtg cgtggcacgc tcgtcggcac cttcccggtg ggccgccgcc
     3721 cggtgagcat ggcctacgac ggcagcagcg tctgggtcgc caacagcagc agcaacaacg
     3781 tcacgaagct ggacgcggcg agcggcgtcg cgctcggcac cttccccgtc ggcgacggcc
     3841 cgttcggcat cgccttcgac gggactgacc tgtgggtctc gaatttcttc agccagagcg
     3901 tgatgaagct gcgccgcctg gacggggcgc tcgtcggaac ctacaagacg ggcgacggcc
     3961 cctccgccgt cttctatgac aaggcggtcg gcatcatcgt cgtcaacaac ggcagcaaca
     4021 atctcatgca gttgcgccag tccgacggcg tcgccgtcag cacctcggcc acgacgaccg
     4081 ggccgatcaa cgtcgccttc gacgggacga acctctgggt cgtgagcacg ggcagcaacc
     4141 gcatgacggt gaagaacacc tacccgtcga gcggcacccc ggacgccagc cccggcgtcc
     4201 cgcgcacact cgacaccgcg gtcgtttcga cgacgaaata aacgggcgcg caggcgacgc
     4261 gccgccgtgc ccgtcgcccg cgcgcttcga cagatggcag tacgacgtga gagcagattt
     4321 ggaatttcat atttcatcac ctccaatctg aactctcggt cttccaccct gtgcgttcat
     4381 gttgattact ctcgcggaag ggacgaacga gccatgagaa caggaacggg cctcagcatc
     4441 cgcacgctca cgcgattttc agtcgtcgcg gcgttcctgc tgctttccgc acacgcggcg
     4501 gaagtcgcgg gtcagcccac gcacgtgggg cacgggcgcg cgtcgcaggc tcgccgcgac
     4561 gcgcggcctt cggaaaaaag atcgaagggc gcgcgcgccg ccgcgacgcc gaaggcgacg
     4621 ccgcgcccgg tcgtctactc ctgcccgatg cacccggagg tcacgtccgg cgcgccgggc
     4681 agttgtccga agtgtcggat ggatttggag gctaaagcgc cggacgggcg agacggtggc
     4741 ggcagcgtcg gcgcgccgtc cgccgcgtca cacgacgcgg ctcagctcag ccagccgaag
     4801 ctttcggcag cgcggatcag acaagtcaag gtatacggac ggcaaggcga gagtctcaac
     4861 ctgtatgacg atctcgtccg cgggaggacc gtcgccttta acttcatcac cgtcccgtgc
     4921 gccgccccgt gcgagcaggc tgccgtcttc cgcgaaaccc gtcggaggat gggcgagcgg
     4981 ctggggcctt acgtcaaact gattaccgtc gtagcggg
//
LOCUS       DASPKR010000125         3739 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1826146, whole genome shotgun sequence.
ACCESSION   DASPKR010000125 DASPKR010000000
VERSION     DASPKR010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3739)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3739
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1826146"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..859
                     /gene="miaA"
                     /locus_tag="VD968_03600"
     CDS             <1..859
                     /gene="miaA"
                     /locus_tag="VD968_03600"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: protein motif:HMM:TIGR00174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HYE13510.1"
                     /translation="LALRFGGEVVNCDSVQVYREIEIATAKVPFEERRGVPHHLIDFV
                     PPDVSYTAADWARDALRAIDEIEARGRLAILVGGTGFYLRALRQPFFDAPPTDAVLRR
                     RLAALRERHGAEHLHRLLRRLDPRAGARLNPRDWARVQRALEVRLQTGAPISEQQPQR
                     PAAPPHAARLRVLALNPPRAELYRRINERAEAHFRAGLVEEVRRLLARGVPASSSALG
                     AHGYRRVVEHLRGERTLESAVEQTKLDVRHYAKRQLTWFRREPGVEWLEGFGEDPAVQ
                     QEAASRLGL"
     gene            978..1286
                     /gene="hfq"
                     /locus_tag="VD968_03605"
     CDS             978..1286
                     /gene="hfq"
                     /locus_tag="VD968_03605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003095657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006378 - mRNA polyadenylation [Evidence
                     IEA];
                     GO_process: GO:0016070 - RNA metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HYE13511.1"
                     /translation="MDTKSTPQNIQDAFLNTVRREKDTVTIYLMNGAKLSGRIRSFDK
                     FSVLLESGAQEQLIFKHAISTILHARRSTGEHRAPHHAHDPQPSGEAGADQPGGRAEG
                     "
     gene            1334..1972
                     /gene="tmk"
                     /locus_tag="VD968_03610"
     CDS             1334..1972
                     /gene="tmk"
                     /locus_tag="VD968_03610"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HYE13512.1"
                     /translation="MASAFITFEGIDGSGKSTQMRMLASELRLRGQEVVSTREPGGTS
                     LGLRLRRVLLDAEEQVDPLAELLLYAADRAQHVRKLVRPALESGHVVLSDRYADATVA
                     YQGAGRGFPDELVAELVALATGGLMPDLTLIFDLTVDESQRRARKRAGRRAKQDRLDV
                     EDAAFHTRVRDAYLRIAASEPERVRVIDAGGSVQETQAQVMRHVMPLIEARS"
     gene            2000..3040
                     /locus_tag="VD968_03615"
     CDS             2000..3040
                     /locus_tag="VD968_03615"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF024575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HYE13513.1"
                     /translation="MFGSLIGNERAKETLRRMLRQGRLPGALLLAGEEGLGKKLFAVE
                     VARAFMCRAKEGVEGCGVCPACVRAAKFELPASDDKDEFRKVIWSGHRDVGQIRPYNR
                     SILVDAVRDLERECNFRPVEGSARVFLIEHAEGLNESSSNALLKTLEEAPPTTHLILI
                     TSRPAALLPTIRSRCQTVRFAPLTPEELEGYLVKTRKRSGEEARLAARLSGGRPAVAL
                     GINLDTYRERRDAMLGVVEALAGGAADRSRLLRAAEELSDAKNKDEFEPRLDVLETLV
                     RDLWLVALGGEGAPVVNDDLRGRLARAARDVGPSRPPRWLARVEELRSQLAVNVNRRV
                     AADALFLGMAAD"
     gene            3088..3717
                     /locus_tag="VD968_03620"
     CDS             3088..3717
                     /locus_tag="VD968_03620"
                     /inference="COORDINATES: protein motif:HMM:NF039455.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6445 family protein"
                     /protein_id="HYE13514.1"
                     /translation="MRRFLMAVDGFYPNPDRVRAKALEMDYVEPDGLVGWRTKPYFPA
                     RVRERIEKILRARINVWPDDPEDVELSNGTFFFGLSAGRLAETVGVHYDYPAAYVTMV
                     VYLTPGAAHDAGTSLWQHRPTGLTAAPTPADARRLGTTVAELERVLLRDSTRPRRWCE
                     LDRVGNLYNRAVFYRSGLLHSATRHFGSSLRNGRVYQTFRFGVDWKPAL"
BASE COUNT          593 a         1364 c         1223 g          559 t
ORIGIN      
        1 tctggccttg cgcttcggcg gcgaggtcgt caactgcgac tccgtacagg tctatcgcga
       61 gatcgagatc gcgaccgcca aagtcccgtt tgaggagcgg cgcggcgtcc cgcaccacct
      121 gattgacttc gtgccgcccg acgtcagcta caccgcagcc gactgggcgc gcgacgctct
      181 gagggcgatt gacgagatag aggcccgcgg ccgcctcgca atcctcgtcg gcggcacggg
      241 attttacctt cgcgccctcc gccaaccctt cttcgacgca ccgccgacgg atgcggtctt
      301 gcgccgccgt ctcgccgccc tgcgcgaacg gcacggcgcc gagcacttgc acagattgct
      361 ccgccgcctc gatccgcgcg cgggcgcgcg cctcaacccg cgagactggg cgcgcgtgca
      421 gcgcgccctc gaagtgcgtc tccagaccgg cgcgccaatc tcggagcagc agccgcagcg
      481 gcctgcagcc ccgccgcacg cggcgcgcct tcgcgtctta gccctcaacc ccccgcgcgc
      541 ggagctttac cgccgcatca acgagcgcgc cgaggcacac ttccgcgccg ggctcgtcga
      601 ggaggtgcgg cggctcctcg cgcgcggcgt gccggcctcg tcgagcgcgc tcggcgcgca
      661 cggctatcgc cgcgtcgtcg agcacctgcg cggagagcgc acgctcgaga gcgccgtcga
      721 gcagacgaag ctcgacgtcc gacactacgc caagcgccag ctcacgtggt tccggcgcga
      781 gccgggcgtc gagtggctcg aaggcttcgg cgaagacccg gccgtccagc aagaggccgc
      841 atcgcggctc ggcctctgaa ggtgggcgga agtcttgttt tttctgtaaa ctttgggcga
      901 agaactttga acttcgagct tgttgggtgt aatctgaacc gtctcggggt agtctggaag
      961 agcatgcggg gtcggccgtg gacacgaaat caactcccca aaacatacag gacgcgttcc
     1021 tcaacacggt tcgccgcgag aaggacaccg tcaccatata ccttatgaac ggcgcgaagc
     1081 tgtcggggcg catccgtagc ttcgacaagt tctccgtcct gttggagtcg ggcgcgcagg
     1141 agcagctcat cttcaagcac gccatctcga ccatcctgca cgcgcgccgc tcgacgggcg
     1201 agcaccgcgc gccgcaccac gcgcacgacc cgcagccctc gggagaggcg ggcgccgacc
     1261 agcccggcgg ccgcgccgaa gggtgagcgg ccccgccgcg cgcggcgccg tagaacggag
     1321 actctgacag cctttggcct ctgctttcat caccttcgaa ggaatagacg gcagcgggaa
     1381 gtcaacgcag atgcgcatgc tcgcgagcga gctgcgcctg cgggggcagg aggtcgtctc
     1441 gacgcgcgag ccgggcggga cctctctggg cctgcgcctc cgccgcgtgc tgctagacgc
     1501 ggaggagcag gttgacccgc tcgccgagct tctgctctac gccgcagacc gcgcgcagca
     1561 cgtccgcaag ctcgtccgcc cggctttgga gtcgggccac gtcgtcctgt ccgaccgcta
     1621 cgcagacgcc acggtcgcct accagggcgc aggccgcggc ttcccagacg agctcgtcgc
     1681 cgagcttgtg gcactcgcca ccggcgggct gatgcccgac ctcacgctca tctttgacct
     1741 cacggttgac gagagccagc gccgcgcccg caagcgcgca ggccgacggg ccaaacaaga
     1801 caggctcgac gtcgaggacg cggccttcca cacgcgcgtc cgcgacgcgt acctccgaat
     1861 cgccgcctcc gagcccgagc gcgtccgcgt catagatgcc ggcggctcgg tgcaggagac
     1921 gcaggcgcag gtcatgcgcc acgtaatgcc tctgatagaa gccagaagtt agaagccctc
     1981 tgccctcact tcgactttta tgttcggctc actgattggc aacgagcgcg cgaaggagac
     2041 gctgcggagg atgctccgtc aggggcgtct gcccggcgcg cttctgcttg cgggcgagga
     2101 ggggttagga aaaaaactct tcgccgtcga ggtcgcgcgc gccttcatgt gccgcgcgaa
     2161 ggagggcgtc gaagggtgcg gcgtctgccc ggcgtgcgtg agggccgcga agttcgagct
     2221 gcccgcctcg gacgacaagg acgagttcag gaaggtcatc tggagcggac acagggacgt
     2281 ggggcagatt cgcccttaca accgctcgat tctcgttgac gcagtccgag acctcgagcg
     2341 cgagtgcaac ttccgccccg tcgagggctc ggcccgcgtc ttccttatag agcacgccga
     2401 gggcctgaac gagtcgtcct cgaacgcgct gctcaagacg ctcgaagagg cgccgcccac
     2461 gacgcacctg attctcataa cctcgcgccc ggcggcgctg ctgccgacca tacgctcgcg
     2521 ctgtcagacc gtccgcttcg cgccgctcac gcccgaagag ttggagggct acctcgtcaa
     2581 gacgcgcaag cgctcgggcg aggaggcgcg cctcgcggcg cggctctccg ggggcaggcc
     2641 cgccgtcgcg ctcggcatca acctcgacac ctaccgcgag cggcgcgacg cgatgctcgg
     2701 cgtggtcgag gcgctcgcgg gcggcgcagc agaccgctcg cggctgctgc gcgccgccga
     2761 agagcttagc gacgcgaaga ataaggacga gttcgagccg cgtttagacg ttctggagac
     2821 gctcgtgcgc gacctctggc tcgtcgctct gggcggcgag ggcgcgcccg tcgtcaacga
     2881 cgatttgcgc gggcggctcg cgcgcgcggc ccgtgacgta ggcccctcgc gcccgccgcg
     2941 ctggctcgcg cgcgtcgagg agctgcgctc gcagctcgcc gtaaacgtca accggcgcgt
     3001 cgccgccgac gcgctcttcc tcggcatggc cgccgactag cgcgcgccgc ctctctctca
     3061 cagcccgacc cacggaggga caagcccttg agacgcttcc tcatggccgt tgacggcttc
     3121 tacccgaacc ccgaccgcgt gcgcgcgaag gcgctcgaga tggattacgt cgagcccgac
     3181 ggccttgtgg gctggcgcac gaagccctac ttccccgcgc gcgtgcgcga gcgcatcgag
     3241 aaaatcctgc gcgcccgcat aaacgtctgg cccgacgacc ccgaagacgt tgagctcagc
     3301 aacggcacct tcttcttcgg cctctcggcg ggccggctgg ccgagaccgt gggcgtccac
     3361 tacgactacc ccgccgccta cgtcacaatg gtcgtctatc tgacgcccgg cgccgcccac
     3421 gacgcgggca cgtcgctctg gcagcaccgc cccaccggcc tcacggccgc gcccacaccg
     3481 gccgacgcac ggcgcttagg cacgacggtc gccgagctcg agcgcgtgct gcttcgcgac
     3541 agcacgagac cgcggcgctg gtgcgagcta gaccgcgtcg gcaacctcta caaccgcgcc
     3601 gtcttctacc gctccggcct cctgcactcc gccacgcgcc acttcggcag cagcctccgc
     3661 aacggccgcg tctatcagac cttccgcttc ggcgttgact ggaagcctgc gctctaaaac
     3721 taaaaggccg gcgcccgtc
//
LOCUS       DASPKR010000126         3083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1308892, whole genome shotgun sequence.
ACCESSION   DASPKR010000126 DASPKR010000000
VERSION     DASPKR010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3083)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3083
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1308892"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1241)
                     /gene="larA"
                     /locus_tag="VD968_03625"
     CDS             complement(<1..1241)
                     /gene="larA"
                     /locus_tag="VD968_03625"
                     /inference="COORDINATES: protein motif:HMM:NF033504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent lactate racemase"
                     /protein_id="HYE13515.1"
                     /translation="MIVDFPYPGYERIAAVEVPDENLLGVYAPRPVGQVREEEVLGGG
                     FAEPYGAPHLRDAVRPTDRVLVLVDDATRGTPLPRLLKRGVGKLWAAGVSDGQIRLLT
                     AQGTHRRMTEGELKQKLGEFYGRFETHQHDWLDESNLHEFGRTSDGTRVTANRLLREA
                     DFVIGLGSIVPHRVKGFSGGAKIAFPGVSGREMQERNQWEASGRTAEAVMGVAENPTR
                     QRTEEAARLVGLNYIANVVTDADKKIVGCFVGDTVEAHRAGCKLSREINAARLPRRAG
                     IVLVDSHPADRDFWQSAKGFYSGTMAVRDGGTLVVVSPNPEGVADNHPNLLEIGYRPY
                     DEIVRMVEAGEIAGVVGAAILADLAQVVDRADCVLVSPGITREETERLGFRYAETAQE
                     ALRMAFERQGRGAEVAVLRHGG"
     gene            complement(1279..1716)
                     /locus_tag="VD968_03630"
     CDS             complement(1279..1716)
                     /locus_tag="VD968_03630"
                     /inference="COORDINATES: protein motif:HMM:NF015444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPC domain-containing DNA-binding protein"
                     /protein_id="HYE13516.1"
                     /translation="MKSKLLHDGGEKTFVLVFDTGDEVVAGLLDFAKEHKLAASMTAI
                     GAFERATLGFFESERKDYKKIHINEQVEVMSLIGNIALDESGQPKVHAHVVVGRRDGT
                     AHGGHLLEAYVRPTLEVILVESPEPLRRKMNAEVGLPLIDLTE"
     gene            complement(1743..>3083)
                     /locus_tag="VD968_03635"
     CDS             complement(1743..>3083)
                     /locus_tag="VD968_03635"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HYE13517.1"
                     /translation="VAMLADAACRHALNNRGVAHITFPVDYQEKEPKGKGTMHKVEGH
                     TSSRWSPPVVVPPEDELKLAAFILNEAKKPVVLVGQGALGAGGEVIELADKLGAPVVK
                     ALLGKAVIPDDHPLTTGGLGLLGTGPSQEAMEQADALLIIGSSFPYMEYLPKPGQAKG
                     VQIDDKPDRIGLRFPVDVGLVGDAKPTVAALSRFVTRKEDRSFLEQAQAGMKDWWELM
                     RTRAQKDDVPIKPQRVAWELSELVAEDAIISTDSGTITTWIARQFKIRGQQKFSCSGT
                     LATMACGLPYAIAAKVAFPERQSIAFVGDGGFTMLMCEFLTAVKYNLPIVVVIIKNNT
                     LGQIKWEQIVFLGNPEYGCELHNPDFAKYAEACGGLGFTVERPEEIRPTLEQALASGR
                     PTVVEVVVDPFEPPMPPKVSAEQALHFAEALAKGQPAGGKIALTLFRDKLSELF"
BASE COUNT          532 a         1050 c          900 g          601 t
ORIGIN      
        1 ccgccgtgcc gcagcaccgc gacctccgcc ccgcgcccct gccgctcaaa agccatcctc
       61 aatgcttcct gcgccgtttc ggcgtagcga aaaccgagtc gctccgtctc ctcgcgcgtg
      121 atacccggcg aaaccagaac acagtctgcg cggtcaacga cctgagccaa gtccgcgagt
      181 atggccgcgc ccaccacgcc ggcgatttcg cccgcctcga ccattcttac aatctcatcg
      241 taggggcggt agccgatctc aagtaggttc gggtggttat cggccacccc ctctgggtta
      301 ggcgagacga cgacgagcgt accgccatcg cgcacggcca tcgtgcctga gtaaaacccc
      361 ttagccgact gccagaagtc ccggtctgcc gggtgcgagt caacgagcac gataccagcg
      421 cgccgcggca gacgcgcggc gttgatttcg cgcgagagct tacaacccgc tcggtgtgct
      481 tcaaccgtgt ccccgacgaa gcagccgacg atctttttgt cggcgtcggt gacgacgttg
      541 gcgatgtagt tgagaccgac gaggcgcgca gcctcctccg tcctctggcg cgtcgggttc
      601 tcggcgacgc ccatcacggc ctccgccgtg cgcccggacg cctcccactg attcctctct
      661 tgcatctccc gccccgacac gccggggaat gcgatcttcg ccccgcctga aaaacctttc
      721 acgcggtgcg gcacaatcga tccgaggcct atcacgaaat ctgcttccct gagcagtctg
      781 ttggccgtca cgcgcgtccc gtcgctcgtg cgcccgaact cgtgaaggtt cgactcgtcc
      841 agccagtcgt gctgatgcgt ctcgaaccgc ccgtagaact cgccgagctt ctgcttcagc
      901 tcaccttcgg tcatcctgcg gtgagtgccc tgcgccgtca gcagtcgaat ctgcccgtcc
      961 gagactcccg ccgcccacaa cttcccgacc ccgcgcttga gtagtcgcgg gagaggggtg
     1021 ccgcgcgttg cgtcgtcaac gaggacgagc acgcgatccg tcggcctcac tgcgtcgcgc
     1081 aggtgcggcg caccgtaggg ttcggcgaag ccgcccccca gcacctcttc ttccctcacc
     1141 tgcccgacgg ggcgcggcgc gtagactccc agaaggttct cgtccggcac ctcgaccgcc
     1201 gcgatacgct cgtaaccggg gtatgggaag tcaacgatca aggcgtgacc tttcgacccg
     1261 aaactgagag tcttcggctc actccgtcaa atcaatcagc gggaggccga cctccgcgtt
     1321 catcttccgg cgaagcggct ctggcgactc gacgagtatg acttccagcg ttggtcggac
     1381 gtatgcctca agcaggtggc cgccgtgtgc cgtaccgtcc cgacggccta cgacgacgtg
     1441 cgcgtgcacc ttcggctgcc cgctttcatc aagggcgatg ttgccgatga gagacattac
     1501 ctcgacctgc tcgttgatat gaatcttttt gtagtccttt cgctccgact cgaagaagcc
     1561 caacgtggcg cgctcgaacg cgcctatcgc ggtcatgctc gccgcgagtt tatgctcctt
     1621 ggcgaagtcg agcagccccg ctaccacctc gtcgcccgtg tcgaacacaa ggacgaacgt
     1681 cttttcgccg ccgtcatgaa gtaattttga tttcacggga gacctcgcag ggtaagctca
     1741 cgtcaaaaca actcgctcaa cttatctcgg aacagcgtca gcgcgatctt gccgcccgcg
     1801 ggctgcccct ttgccaaagc ctcggcgaag tggagcgcct gctctgcgct caccttcggc
     1861 ggcatcggcg gctcgaacgg atcaacgacc acctcgacca cagttggcct gccggacgca
     1921 agggcttgct caagcgtcgg gcgtatctct tccggtctct cgacggtgaa gcctagcccg
     1981 ccgcacgcct ctgcgtactt cgcaaaatcc gggttgtgca gctcgcagcc gtactcgggg
     2041 tttccgagaa agactatctg ctcccactta atctggccga gcgtgttgtt cttaataatg
     2101 acaacgacga tgggcaggtt gtacttgacg gcggtcagga actcgcacat caacatcgtg
     2161 aagccgccgt cgccgacgaa ggcaattgat tgcctttcag gaaaagcgac cttcgccgcg
     2221 attgcataag gcaggccgca cgccatcgtc gcaagcgtgc ccgaacaact gaacttctgc
     2281 tgcccacgga ttttgaactg ccgcgcgatc cacgtcgtga tcgtgccgga gtcggtcgag
     2341 atgatcgcgt cttccgccac caactctgac aactcccacg cgacgcgctg cggcttgatc
     2401 ggcacgtcgt ctttctgtgc gcgcgtgcgc atcaactccc accaatcttt catcccggcc
     2461 tgcgcctgtt cgagaaaact tcgatcctct ttgcgcgtga cgaagcgcga gagcgcggcg
     2521 acagtcggtt tggcgtcgcc gacgaggccg acatcgacgg gaaaacgcag gccgatgcgg
     2581 tcgggcttgt cgtctatctg cacgcccttc gcctgaccgg gcttcggcag gtactccatg
     2641 taggggaatg aagagccgat gatgaggagc gcgtcggcct gctccatcgc ctcttgcgac
     2701 gggccagtgc cgagcagccc gagcccgccc gtcgttaaag ggtggtcgtc cggaatgacg
     2761 gccttgccga gcagcgcctt aacgacgggc gcgccgagtt tgtcggctag ttcgatcacc
     2821 tctccgcctg cgccgagagc gccctgaccg acgaggacga ccggtttctt ggcctcgttg
     2881 aggatgaagg ccgcgagctt cagttcatct tccggcggga cgacgacggg aggcgaccag
     2941 cggctcgaag tgtgcccctc gaccttgtgc atcgtaccct tgcccttcgg ctctttctcc
     3001 tgatagtcaa cggggaaggt gatgtgcgcc acccctcggt tgttgagtgc gtggcggcac
     3061 gcggcgtcgg cgagcattgc tac
//
LOCUS       DASPKR010000127         3104 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_662040, whole genome shotgun sequence.
ACCESSION   DASPKR010000127 DASPKR010000000
VERSION     DASPKR010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3104)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3104
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_662040"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..1257
                     /locus_tag="VD968_03640"
     CDS             88..1257
                     /locus_tag="VD968_03640"
                     /inference="COORDINATES: protein motif:HMM:NF023260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3352 domain-containing protein"
                     /protein_id="HYE13518.1"
                     /translation="MRKDRTLYLSNSADALKKVLDVRVGKAKSLETSETFARARSRSS
                     ADDGMFGYLDGAALTRLIESGPSSEENAGVAAFRQLFHGAGASSVQAASFTSAFEGGR
                     VVERFAVNTTGKEGVLGTIATNPPTSQALLALVPEDALQAFDASIAGAPQAFDQFLTL
                     VSQVAVQAGKKNPQDIFTEVSNKTGLDLRNDLIGQLGAEVCVAQLRNGDDLGGIFILN
                     VKDEQAFARTLEKFAGHKKRAVTSREYKGVVIRNIAGEEGRGLEYAFVGGNLVASGEG
                     RLVERVIDTAQGGPSLAQTAAFREAAAGVSNPQFIYFNTNADYVERLGNVLKSGEQEF
                     KSSGRAATLKPSFAFGVSKPEGLFVESRTPLGTFPRLLAAVTSKLGDRERAKGSE"
     gene            1494..2105
                     /locus_tag="VD968_03645"
     CDS             1494..2105
                     /locus_tag="VD968_03645"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE13519.1"
                     /translation="MTAEHELIRRAQAGDLEAFCRLAALHERRVYSLALHFCRRPEDA
                     EDLSQEVWLKAFRSISGFEFRSGFYTWLRQILVNSFLNHARSTTMTLDGEKTAVKLDS
                     LEDFEGDTMTAAMAQTAAESEGAVHRRLMVGRVYEALGELTPQQRLVFLLKHRDGMTC
                     REIAETFGCSTGSVKKSLFRSLVKLRSALGVRSPELEPMTAGE"
     gene            2127..>3104
                     /locus_tag="VD968_03650"
     CDS             2127..>3104
                     /locus_tag="VD968_03650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13520.1"
                     /translation="MHDCETTKERLVELLFGELGGAAKARALEELGACADCREQYRSM
                     AATLEIFDEAAEGALPAEGFWAGYGERLRKRMAQELSTDMLTGALPFARGEYRLTFLE
                     DEGLTRRLARELRSVARDAELTWPEFKRDPLGFASRSAHVYSNATWRFFSQRNVAFAT
                     FSSILFVTLFLGAVFGLERLRASRAAANLAAVREDLQFLGMVDDIPREQEEPEEGAAG
                     TAKGSGGGQKPKQERPQGGGGGGRQEQLPASFGKLPQASLAPPILPPNPHPPAVKSPS
                     LPVLPTIQADPTLFPPDARPLPYGDPKSSSATPSAGPGVGDGIGTGSGPG"
BASE COUNT          535 a         1024 c         1059 g          486 t
ORIGIN      
        1 taagaagggc gtgagcatca gggaggagga gtacgggatg cgaccatcca cgtcgtcacc
       61 tctgacgggc gcgaagacgt gaccttcgtg cggaaggacc ggacgctcta cctctcgaac
      121 tctgcggacg cgctcaagaa ggtcttggac gtgcgcgtgg ggaaggcgaa gtcgcttgag
      181 acgagcgaga ctttcgcgcg tgcgcgctcg cgctcctcgg ccgacgacgg gatgtttggc
      241 tacctcgacg gcgcggcttt gacgcgtctg attgaaagcg gcccttcgtc cgaagaaaac
      301 gcgggcgtgg cggccttccg ccagctcttc cacggcgcgg gcgcaagctc cgtccaggcg
      361 gcctccttca cgagcgcgtt tgagggcggc cgcgtggtcg agcgcttcgc cgtaaacacg
      421 acgggcaagg agggcgtgct cggcacgatt gcgacgaacc cgccgacctc gcaggcgctc
      481 ctcgcgctcg tccccgaaga cgcgctgcaa gccttcgacg cctcgattgc cggggcgccg
      541 caggccttcg accagttcct gacgctcgtc agccaggtcg ccgtgcaggc ggggaagaag
      601 aacccgcagg acatcttcac ggaggtctcg aacaagaccg ggctcgacct gcgcaacgac
      661 ctgatcgggc aactcggcgc ggaggtctgc gtcgcacaac tgcggaacgg cgacgacctc
      721 ggcggcatct tcatactgaa tgtgaaggac gaacaggcgt tcgcgcggac gctcgaaaag
      781 ttcgccgggc acaagaagcg ggcggtcact tcgcgcgagt acaagggcgt cgttatcagg
      841 aatatcgcgg gcgaggaggg gcgcgggctt gagtacgcgt tcgtgggcgg gaacctcgtc
      901 gcgagcggcg aagggcgtct ggtcgagcgc gtgattgaca ctgcacaggg cgggccttcg
      961 ctcgcgcaga ccgcggcctt ccgcgaggcg gccgcgggcg tcagcaaccc gcagttcatc
     1021 tacttcaaca ccaacgccga ctacgtcgag cgcctcggca acgtcctcaa gagcggcgag
     1081 caggagttca agtcttcggg ccgcgccgcg acgctcaagc cgagcttcgc cttcggcgtc
     1141 tcaaaaccgg agggcctctt cgtcgagagc cgcacgccgc tcggcacgtt cccgcgcctg
     1201 ctcgcggccg tcacctcgaa gctgggcgac cgggagaggg cgaagggttc ggagtgagtc
     1261 gagccattag caactaataa cttcgccact aaggcacaaa ggcacggaac gagccccctc
     1321 tttcgtgcct ttgtgcctta gtggtcaata gtttttctcc caccgccaag gcggcccgtc
     1381 caacttatca cgcccggccc gtcatcagag caaaaaaatc gcggcggctc gccaaccact
     1441 ccggcgccgc agttgtctat tgctacgacc ttcaggcgaa gggaatctgg agtttgaccg
     1501 cagagcatga actgatacgg cgcgcgcagg cgggcgacct cgaagccttc tgcaggctcg
     1561 ccgccctcca cgagcggcgc gtctattcgc tggcgctcca cttctgccga cgccccgagg
     1621 acgccgaaga cctctcacag gaggtttggc taaaggcgtt ccgctcaatc agcggcttcg
     1681 agttccgctc gggtttctac acatggctga ggcagattct ggtcaactcg ttcctcaacc
     1741 acgcgcgctc gacgaccatg acgctcgacg gcgaaaagac ggccgtgaag ctcgacagcc
     1801 tcgaagactt cgagggcgac acgatgactg ccgccatggc gcagaccgcc gccgagtcgg
     1861 agggcgccgt gcacaggcgc ctgatggtcg ggcgggttta cgaggcgctc ggggagttga
     1921 caccgcagca gaggctcgtc ttcctgctca agcaccgcga cgggatgacg tgccgcgaga
     1981 ttgcagagac gttcggctgc tcgacgggct cagtgaagaa atctctgttc cgctcgctcg
     2041 tgaagctgcg ctctgcactg ggggtgcgct cgcccgagtt agagcccatg acggccggcg
     2101 agtaatttaa cgtaaggcga cgggtgatgc acgactgcga gacgacaaag gaaaggctgg
     2161 tggagctgct cttcggcgag cttggcgggg cggcgaaggc gcgcgcgctc gaagagcttg
     2221 gggcgtgcgc cgactgccgc gagcagtacc gctcgatggc ggcgacgctt gagattttcg
     2281 acgaggcggc cgagggcgcg ctcccggccg agggcttctg ggcgggttac ggagaaaggt
     2341 tgcgtaagcg tatggcacaa gaactctcga ccgacatgct gacaggggcg ctgccgttcg
     2401 cgcggggtga gtaccgcctg acgttccttg aggacgaagg cttgacgcgg cggctggcgc
     2461 gagagcttcg ctcggtggcg cgcgacgcgg agttgacgtg gcccgagttc aagcgcgacc
     2521 cgctcggctt cgcctcgcgc tcggcacacg tttactcgaa cgcgacctgg cgcttcttct
     2581 cgcagcgcaa cgtcgcgttc gcgaccttct cctccatcct cttcgtcacg ctcttcctcg
     2641 gcgcagtctt cgggctcgag cgcctgcgcg cctcgcgcgc cgccgcgaac ctcgccgccg
     2701 tgcgcgaaga cctccaattc ctcggcatgg ttgacgacat cccgcgcgag caggaggagc
     2761 cggaggaggg cgcggccggc acggccaagg gctcaggcgg cgggcagaag ccgaagcagg
     2821 agcggccgca gggcggcggc gggggcggcc gccaggagca gctgccggcc tccttcggca
     2881 agctgccgca ggcgtcgctg gcccccccca tactgccccc caacccgcac ccgccggcgg
     2941 tgaagagccc gtcgctgccg gtgctgccga ccatacaggc cgacccgacg ctcttcccgc
     3001 ccgacgccag gccgctgccc tacggcgacc cgaagtctag ctcggcgacg ccctcggccg
     3061 gccccggcgt gggcgacggc ataggcaccg gctcggggcc gggc
//
LOCUS       DASPKR010000128         2786 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_533154, whole genome shotgun sequence.
ACCESSION   DASPKR010000128 DASPKR010000000
VERSION     DASPKR010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2786)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2786
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_533154"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..995)
                     /gene="argB"
                     /locus_tag="VD968_03655"
     CDS             complement(108..995)
                     /gene="argB"
                     /locus_tag="VD968_03655"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HYE13521.1"
                     /translation="MSRQRLDLLREALPYIRRFKGKTFVVKLSGKVTEEREQLASLAE
                     ELALLYQVGIRLCVVHGGGKQLTELAEQLGVEQTIINGRRVTDDATLDMAKMIFAGKI
                     NTDILAALRHRGVDAVGLSGVDGNIVHAERRPPKEIVNRETGVRAEVDFGHVGDVVEI
                     NDRLLQVLLDHDYLPVVSSLGADSEGRVFNINADTIAAEIAVRLQAEKLVMLSDVDGI
                     YLRPGEQATKISRLTVEEVNALVRDGVASGGMIPKLQNIAETLARGVRSAHIIKGSLR
                     NALLSEVFTDEGTGTMIVA"
     gene            complement(995..2005)
                     /locus_tag="VD968_03660"
     CDS             complement(995..2005)
                     /locus_tag="VD968_03660"
                     /EC_number="2.1.3.9"
                     /inference="COORDINATES: protein motif:HMM:NF003384.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_function: GO:0043857 - N-acetylornithine
                     carbamoyltransferase activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylornithine carbamoyltransferase"
                     /protein_id="HYE13522.1"
                     /translation="MRHFLTTADRTREELERLLDSALRFKRGDDIQKPLAGRSVALVF
                     FNPSLRTRASMQVGVYELGGNAVVLEPGGTSWTIEHRDGVVMDGDKTEHVAEFVRVLG
                     RYCAGVGVRTFAAMKSWEEERRDPVLAAFAKYSEVPVINLESAMHHPCQSLADMLTVR
                     EKLGAGRRRLLLTWAWHPKPLPMAVPNSFALAAAQMGHDLVIARPPGYGLDEELMEDI
                     RARAEAAGGSVRVTEDVEAAFDGAQAVYAKSWGGRGLYGDAAADIAHREAYRSLWTVD
                     AAKMRRTDDAVFMHCLPVRRNVIVSDEVIDSPRSAVIDEAENRLHAQKAVLTDLLAGG
                     RR"
     gene            complement(2016..>2786)
                     /locus_tag="VD968_03665"
     CDS             complement(2016..>2786)
                     /locus_tag="VD968_03665"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYE13523.1"
                     /translation="FHGRTADSISATFLGKYRELGRPNVPGHLCAEFGSAESVAALAD
                     ETVAAVMLEPIQSMAGVREAGPEFFAALRRLCDERGMLLIYDEVQTGVGRTGEWFFAG
                     SEAGGGVVPDIMTLAKALGSGVPVAACLTTEGVASSVKENDLGTTFGGGMLAMAAVEA
                     TLEAIEADGMLANAREREAQLRGLLAGVAGVTRLRGRGLLLGVEFEEPLAARAQSALL
                     ERRIITGTSSDPRVLRLLPPLCLKAEEAELFVEALKGF"
BASE COUNT          427 a         1012 c          885 g          462 t
ORIGIN      
        1 tccctcggct tcgagggcgg ggcgttcgac gagccgaagg cgtccgaggt gcgcgaccgc
       61 cttcgcgcgt ccatcgagaa gctttagacg cccaaaactc cgccgcgtca ggcgacgatc
      121 atcgtccccg tcccctcgtc cgtgaagact tcggagagga gcgcgtttcg gagcgacccc
      181 tttatgatgt gggcgctccg cacgccgcgg gcgagcgtct ccgcgatgtt ctgaagcttc
      241 ggtatcatcc cgcccgaggc gacgccgtcg cgcacgagcg cgttcacctc ctcgaccgtc
      301 aggcgcgaaa tcttcgtggc ctgctcgccc ggccgaaggt atatgccgtc cacgtccgag
      361 agcatgacga gcttctcggc ctgtaggcgc acggctatct cggcggcgat ggtgtcggcg
      421 ttgatgttga agacgcggcc ctctgagtcc gcgccgagcg aggagacgac cggcaaatag
      481 tcgtggtcga gcagcacctg aagcaggcgg tcgtttatct ccacaacgtc gccgacgtgg
      541 ccgaaatcaa cctcggcgcg cacgcccgtc tcgcgattca cgatctcctt cggcggccga
      601 cgctcggcgt ggacgatgtt gccgtcaacg cccgagagcc ccacggcatc gaccccgcgg
      661 tggcgaaggg cggcgagtat gtcggtgttt atcttcccgg cgaaaatcat cttcgccatg
      721 tcgagcgtgg cgtcgtccgt gacgcgccgg ccgttgatta tcgtctgctc gacgcccaac
      781 tgctcggcca gctccgtcaa ctgcttcccg ccgccgtgca cgacgcacag gcgtatgccg
      841 acctggtaaa ggagcgcgag ctcttcggcg aggctcgcca actgctcgcg ctcctccgtc
      901 accttccccg agagcttcac gacgaaggtc ttgcccttga agcggcgtat gtagggcagc
      961 gcctcgcgca ggaggtctag tctctgccgg ctcatcagcg gcgccccccg gcgagtaaat
     1021 ctgtgaggac ggccttctgc gcgtggaggc ggttctcggc ctcgtctatg acggcggagc
     1081 gcggcgagtc aatcacctcg tccgagacga tgacgttgcg gcgcacgggc aggcagtgca
     1141 tgaagacggc gtcgtccgtc cgccgcatct tcgccgcgtc aaccgtccag agcgagcggt
     1201 aagcttcgcg gtgagctatg tcggctgccg cgtcgccgta gagccctcgc ccgccccagc
     1261 tcttcgcata gacggcctgc gcgccgtcga aggccgcctc aacgtcctcc gtcacacgca
     1321 cgctcccgcc cgccgcctcg gcgcgggcgc gtatgtcttc catcaactct tcgtcgagcc
     1381 cgtagccggg cgggcgcgct atcacgaggt cgtggcccat ctgcgcggcg gcgagcgcga
     1441 agctgttcgg cacggccatc ggcagcggct tcgggtgcca ggcccacgtc agaagcaggc
     1501 gcctgcgacc ggcgcccagc ttctcgcgca ccgtcagcat gtcggcgagc gactggcagg
     1561 ggtggtgcat cgccgactcc aaattgatga cggggacttc cgaatacttc gcgaaggcgg
     1621 cgagcaccgg gtcacgccgc tcctcctccc agctcttcat cgccgcgaag gtgcgcacgc
     1681 ctacgcccgc gcagtagcgg ccgagcacgc gcacgaactc ggcgacgtgc tcggtcttgt
     1741 cgccgtccat cacgacgccg tctcggtgct cgatagtcca gctcgtcccg cccggctcta
     1801 ggacgacggc gttcccgccg agctcataga ctccgacctg catcgaggcg cgcgtgcgca
     1861 gggaagggtt gaagaagacg agtgcgacgg agcggccggc gagcggcttc tgtatgtcgt
     1921 cgccgcgctt gaagcggagc gccgagtcga gcaggcgctc gagctcctcg cgcgtgcggt
     1981 cggcggtcgt taagaaatgc ctcatcaatt ttccttcaga aacctttcag cgcctcgacg
     2041 aacaactccg cctcctcggc cttcaggcag agcggcggca gcagcctcag cacgcgcggg
     2101 tcgctcgacg tgcccgtgat gattcgcctc tctaacaggg ccgactgcgc gcgcgccgct
     2161 agcggctctt caaattcgac gccgaggagc agcccccgcc cgcgcaggcg cgtcacaccg
     2221 gcgacgcccg ccagcagccc tctcaactgc gcctcccgct cgcgcgcgtt cgcgagcatc
     2281 ccgtccgcct cgattgcttc gagcgtcgcc tccaccgccg ccatcgccag catcccgccg
     2341 ccgaaggtcg tgccgaggtc gttctctttc acggacgagg ccacgccctc cgtcgtcagg
     2401 cacgccgcga cggggacgcc gctcccgagc gccttcgcga gcgtcatgat gtcaggcacc
     2461 acgccgccgc cggcttcgct ccccgcgaag aaccattcgc ccgtgcgccc cacgcccgtc
     2521 tgaacctcgt cgtaaataag tagcatcccg cgctcgtcgc acagccgccg gagcgccgcg
     2581 aagaactccg gtccggcctc gcgcacgccc gccattgact gaatcggctc cagcatcacg
     2641 gccgccaccg tttcgtccgc gagggcggcg accgactcgg ccgagccgaa ctcggcgcac
     2701 aggtggcccg gcacgttggg ccgccctagc tcgcggtact tgccgagaaa ggtcgcactg
     2761 atggagtcgg ccgtgcgccc gtggaa
//
LOCUS       DASPKR010000129         3224 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_921580, whole genome shotgun sequence.
ACCESSION   DASPKR010000129 DASPKR010000000
VERSION     DASPKR010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3224)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3224
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_921580"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1223)
                     /locus_tag="VD968_03670"
     CDS             complement(<1..1223)
                     /locus_tag="VD968_03670"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYE13524.1"
                     /translation="MPSVPPPADLPNNTITKDSPAEFQIGELAPYWLAAIIESAEDAV
                     VTKTLDGVITSWNRGAERIFGYTAEEVIGRPINILIPADHPDEEPAILARLRAGQRIE
                     HYETVRVRKDGSFVDISLTVSPIRGPDGRIIGASKIARDISERKRAEEALRQREEELT
                     DFIENSAVGLHWVAADGTILWANQAELDLLGYTREEYVGHHIAEFHADREVIQDILER
                     LTRDETLHSYEARLRCKDGSIRYVLISSNVRRRDGEFLHTRCFTRDITERRQAEESLR
                     LYGRVLDNMVEGVSVTDEQGFIIYTNPAEDEMFGYARGELVGQHVTVQNTYPPDENER
                     IVREVIEQLKKRGVWSGEWSNRRKDGTPFTTFARITALEISGRKHWVCVQEDITERKR
                     AAAELQATEHRFTMF"
     gene            1706..2164
                     /gene="moaC"
                     /locus_tag="VD968_03675"
                     /pseudo
     CDS             1706..2164
                     /gene="moaC"
                     /locus_tag="VD968_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001612668.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
     gene            complement(2210..>3224)
                     /locus_tag="VD968_03680"
     CDS             complement(2210..>3224)
                     /locus_tag="VD968_03680"
                     /inference="COORDINATES: protein motif:HMM:NF041635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="STM3941 family protein"
                     /protein_id="HYE13525.1"
                     /translation="SDVNPADETVIELNKAKLVLIILGAGAFVAAGAWMLSLDAAAVS
                     SERSFAYFFNDATLVRGLGLVTVVFFGFCGLYAARALFDKKPGLILSRAGIVDNASAV
                     SAGFIPWSDVAGAGVLEIEKQKMLVIQVRSPQKYIGRGGPLRRALNRANYKMVGSSIT
                     IPAITLKIDFAELVSLFNQYQRTYAAGADTSGPMPMRHAHTPATLPEHVGPGERLLNW
                     SPVAVKGTLGAGGIAILVLTLSSLDLLFRIQPPFWAGFAASMLPALIFFLAVPDFLPL
                     KIVRPAQWVAVVWYLVFAALAILLSVSRGLESVDFLLVGFVLLGAWPCIVAIRGLRAG
                     RAT"
BASE COUNT          590 a         1009 c         1058 g          567 t
ORIGIN      
        1 atgaacatcg tgaagcggtg ctcggtcgcc tgcaattcgg cggcggcccg tttgcgctcg
       61 gtgatgtcct cctggacgca gacccagtgt ttgcggccgg agatttcgag cgcggtgatg
      121 cgggcgaagg tggtgaatgg cgtgccgtcc ttccggcggt tgctccactc ccctgaccag
      181 acgcccctct tcttgagctg ctcgattact tcccggacga tccgctcgtt ctcatccggc
      241 gggtaggtgt tctgcacggt gacgtgctgc ccaacgagct cgccccgcgc gtagccgaac
      301 atctcgtcct cggccgggtt ggtgtagatg atgaagccct gctcgtccgt gacgctgacg
      361 ccctctacca tgttgtcgag cacgcgcccg tagagcctga gggactcctc cgcctgcctg
      421 cgctctgtga tgtctctggt gaagcagcga gtgtggagga actccccgtc ccgcctgcgc
      481 acgttggagc tgatgaggac gtacctgatg gagccgtcct tgcagcgcag ccgcgcctcg
      541 tagctgtgca gcgtctcgtc gcgcgtgagc cgctcgagga tgtcttggat gacctctcgg
      601 tcggcgtgga attccgcgat gtgatggccg acgtactcct cgcgcgtgta gccgagcagg
      661 tcgagttccg cctgattcgc ccacaggatg gtcccgtccg ccgccaccca gtgcaggccg
      721 accgcagagt tctcgatgaa gtccgtcagc tcctcctcgc gctggcgcag cgcctcctcc
      781 gcacgcttcc gctcggagat gtcgcgggcg atcttcgagg ccccgatgat ccggccgtcg
      841 gggcctctga tgggcgacac agtcagcgag atatcgacga acgagccgtc cttgcgcacc
      901 cttacggtct cgtagtgctc aatgcgctgg cccgcgcgga ggcgagccag gatggccggc
      961 tcctcgtcag ggtggtccgc agggatcagg atattaatcg gccgcccgat cacttcctcg
     1021 gccgtatagc cgaagatgcg ctcggccccc ctgttccagc tagtgatcac gccgtcgagt
     1081 gttttggtga cgacggcgtc ttcggcggac tcgatgatgg cggcgagcca gtagggggcc
     1141 agttcgccaa tttgaaactc ggccggcgaa tctttcgtga ttgtattgtt cggtagatct
     1201 gctggtggag gaacgctggg catagacaca tttatcggta gaaataaata gacgtagcga
     1261 tgggggaagc acaggggaac tggctggcta taccaagtcc gccccgaata gtaccacgac
     1321 ttcgcctcgc cccgagaggg tttccgtagt gatcaagtcg tgtgtcggtc gtgtgataag
     1381 tgactgccct gcgcgaagcg aacggcgaaa gcatccgcca ttaagacgct aaaagtcaac
     1441 gatttcacgt ctcattgcga cgaagagaag gagatgccca tcaccacctt gccggccggc
     1501 ccggaggcga ttcgtctaga ccgtgcccgt cccgccaagg ctgcgatcac gttgttgagc
     1561 gggactgttg cggcgcacgc acggtacccg cctggatgtt gctctacgac cttagaagct
     1621 gaatgaagaa gagcaatcca caatggagaa attcaggctc cgcccccttg cttcgcccgc
     1681 gcacttcggg gtttactctg aagtcatggg cgagctttca cacctggaca aagaagggcg
     1741 cgtctcgatg gtggacacgg gggctaaggc cgcgacggcg cgcagggccg tggcttcggc
     1801 gcacgtcgtg atgtcgcccg agacggtggc ggccgtgcgc gccagccgca ccccgaaggg
     1861 cgaccccgtc gagacggcgc gcatcgcggg catcatggcc gccaagcgca cggccgagct
     1921 gatacccttg tgccacccgc tgccgctcac gcacgtggac gtgcgcgcgg aggtgcgtga
     1981 cgacggcgtc tatctcgaag ccgaggcggc tacgacggcg cagaccggcg tcgagatgga
     2041 ggcgctcacg gccgcggccg tcgcggcgct gaccgtctat gacatgctga aggccgtcga
     2101 gaagggcatg cggataaccg aagtgcggct cgaagaaaag accggcggga agtccggccc
     2161 gtggaggagg gggcagaggg cggagggcga agcgtcacct gccggcggct caggtcgcgc
     2221 gcccggcccg cagcccgcgg atcgcgacga tgcagggcca cgcgcctagc aggacgaagc
     2281 cgacgagtag gaaatcgacc gactcgagcc cgcgggagac tgacagcagg atagccagcg
     2341 cggcgaagac cagataccag accaccgcga cccactgcgc cgggcggacg attttgagag
     2401 ggagaaagtc cggcaccgcc aggaagaata tgagcgcggg cagcatggag gccgcaaagc
     2461 cggcccagaa aggcggctgt attcggaaaa gcaggtctag cgaagagaga gtcagcacga
     2521 gtatcgcaat cccgcccgcg ccgagggtgc ctttgaccgc gaccggcgac cagttcaaca
     2581 accgctcgcc aggcccgaca tgctcaggaa gtgtcgcggg cgtgtgagcg tggcgcatcg
     2641 gcatcggccc agacgtgtcg gcccctgccg cgtatgttcg ctggtactgg ttaaagagcg
     2701 agaccagctc cgcgaagtca atctttagcg tgatcgcggg gatggtgatc gagctgccca
     2761 ccatcttgta gttggccctg ttgagagccc gcctcaaagg cccgccgcgg ccgatatatt
     2821 tttgagggct ccttacctgg attaccaaca tcttctgctt ttctatctcg aggacgcccg
     2881 cgccggccac gtcagaccac gggatgaacc ccgccgagac ggcgctcgcg ttatcaacga
     2941 tgccggccct gctcaatatc agtccgggct ttttgtcgaa cagcgccctg gcggcgtaca
     3001 gcccgcagaa cccgaagaac acgaccgtca cgagcccgag gccccggacg agcgtcgcgt
     3061 cgttaaaaaa gtacgcgaac gagcgctcgg agctgacggc ggccgcgtcg agggagagca
     3121 tccacgcccc ggccgccacg aaggcgccgg ccccgagtat gatcagaacg agcttcgcct
     3181 tgttcagttc gattaccgtc tcgtcggctg ggttcacgtc gctc
//
LOCUS       DASPKR010000130         3026 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_792154, whole genome shotgun sequence.
ACCESSION   DASPKR010000130 DASPKR010000000
VERSION     DASPKR010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3026)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3026
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_792154"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..345
                     /locus_tag="VD968_03685"
     CDS             <1..345
                     /locus_tag="VD968_03685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13526.1"
                     /translation="KLSKDYQDVLSTFKIVAAMLLFPATWIALAVAAYLWAGWRWALA
                     ALLVAPPAGYVALRFSEEFDRFAAGTRAALIFVTERGFFRRLLEERRAIRREILALGD
                     EAERAGALKTGA"
     gene            complement(418..1614)
                     /locus_tag="VD968_03690"
     CDS             complement(418..1614)
                     /locus_tag="VD968_03690"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HYE13527.1"
                     /translation="MRKLLILACLFLSAAAQAAGQAAAQPSPEAMKARDELYAGARAY
                     RDGRFAEAQRHFERALELDPTQKNTQLFIARSIQQQYKAGVQTPENVAKGEEAVAAYE
                     RVLANDPLNDDAFKAIVFLYGQMRNEEMVREVLTRRAYDSSAPNEKRAEALVILASKQ
                     WQCSYDITERKEHKETVQQADKLVIKYSKPADPADYMKAQQCAAEGLRLADEAVQLDP
                     SSANAWAYKANLLHESAKLADMEGSAEQKADYERQYAEAQGRHEAAKREAEQKKREAA
                     AAGEAPEAGGRRVPVEMPGVPPPSKPKGAIVPAGVLNGKAVSKPNPAYPAEAKAAGAQ
                     GTVTVRILVDEQGRVERAEAVSGHPALRPAAVEAARRARFSPTLVGGKPVKVSGTLTY
                     NFVLER"
     gene            1822..2769
                     /locus_tag="VD968_03695"
     CDS             1822..2769
                     /locus_tag="VD968_03695"
                     /inference="COORDINATES: protein motif:HMM:NF022588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2911 domain-containing protein"
                     /protein_id="HYE13528.1"
                     /translation="MKSFARLTGLAAAALVAVLCSAGLAQAQLRLPRPSQKASVTQTI
                     GVTDVSVTYSRPGVKGRKIWGDPPAGAAAGTATLDDARSRPADAVLVPYGRVWRAGAN
                     EATLFRVTDDVLINGQPLPAGGYSLHMIPGRDEWTIIFNKDEGQWGSFSYDEKKDALR
                     IKVKPETSAANQEWLSYTIEPETESTARVNLRWEKLTVPFTVEVKDVKALAIAKAREA
                     LAAAKPDDWQSPLQAANYALNNKLDLNEAMRWAEQSIKAKENFNNLGLKARILAAQGK
                     TADAVATGEKALQVGKAANANAQAMANFEKTLAEWKSKM"
     gene            complement(2800..>3026)
                     /locus_tag="VD968_03700"
     CDS             complement(2800..>3026)
                     /locus_tag="VD968_03700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13529.1"
                     /translation="TILGIFLLAFYFKRVGGTAAFAGAGAGEAVVLYCFFRTEIAYLW
                     FNVIGALVVIATALAINPFTKRKGGQGDSP"
BASE COUNT          478 a         1021 c         1007 g          520 t
ORIGIN      
        1 aagctctcga aggactacca ggacgtgctc tcgaccttca agatagtcgc cgccatgctg
       61 ctcttcccgg cgacatggat tgcgctggcc gtcgcggctt acctttgggc gggttggcgc
      121 tgggctcttg cggcgctcct cgtcgcgccg cccgccggct acgtcgcgct gcgcttctcg
      181 gaggagttcg accgcttcgc cgccggcact cgcgccgcgc tcatcttcgt caccgagcgc
      241 ggcttcttcc gccgcctgct cgaagagcgc cgcgccatac gccgcgaaat cctcgccctc
      301 ggcgacgagg ccgagcgcgc cggcgccctc aagaccggcg cttgacggga acagtcgtta
      361 agatattcgc cgcggaggca aaaagggctc gggctctcat tcgtgccttc gtggtgctta
      421 gcgctctaag acgaagttgt aggttagggt gcctgagact ttgacgggct tgccgccgac
      481 gagggtgggg gagaagcgcg cgcggcgtgc ggcctcgacc gccgccgggc gcagggccgg
      541 gtggccgctc acggcctccg cgcgctcgac cctgccctgc tcgtccacga gtatgcgcac
      601 cgtcaccgtg ccttgcgcgc ccgcggcctt cgcctcggcc gggtaggccg ggttgggctt
      661 gcttaccgcc ttgccgttca ggactcccgc ggggacgatt gcgcccttcg gcttagacgg
      721 cggcggcacg ccgggcatct cgacgggcac gcgccgcccg ccggcctcgg gcgcttcgcc
      781 cgccgcggcg gcctcccgct tcttctgctc ggcctcgcgc ttggccgcct cgtggcgccc
      841 ctgcgcctcg gcgtactggc gctcgtagtc ggccttctgc tcggcgctcc cctccatgtc
      901 ggcgagcttg gcgctctcgt gcaagaggtt cgccttgtag gcccatgcgt tagcgctcga
      961 agggtcgagc tgaacggcct cgtcggcgag gcgcaggccc tcggcggcgc actgctgcgc
     1021 cttcatgtag tcggccgggt cggccggctt cgagtacttg atgacgagct tgtccgcctg
     1081 ctgtacggtc tctttgtgct ccttccgctc cgttatgtcg taggagcact gccactgctt
     1141 gctggcgagg atgacgagag cctcggcgcg cttctcgttc ggggcggaac tgtcgtaggc
     1201 gcggcgcgtg agcacctctc gcaccatctc ctcgttccgc atctggccgt agaggaagac
     1261 gatcgccttg aaggcgtcgt cgttcagggg gtcgttcgcg aggacgcgct cgtaggcggc
     1321 tacggcctcc tcgcccttcg cgacgttctc gggcgtctgt acgcccgcct tgtactgctg
     1381 ctgtatcgag cgcgcgatga agagctgcgt gttcttctgc gtcgggtcta gctcgagggc
     1441 gcgctcgaag tggcgctgcg cctcggcgaa cctgccgtcg cggtaggcgc gcgctcccgc
     1501 gtaaagctcg tcgcgggcct tcatcgcctc ggggctcggc tgcgcggccg cctgccccgc
     1561 cgcctgcgcc gcggccgaga gaaaaaggca tgccagaatc agtagctttc tcatcagagt
     1621 cctccgaccg tctcaaaatt tcggcggcta acttacacct gcccgggcgg gaagggaagc
     1681 cttaaacttt ttacaagagc gtgagcactt gcggcgcctt ttttgttacc atctcggccc
     1741 gccgccggaa gacattcaag ggcagtgcgc gcttttcaag ccgtctaaat tatttaaccc
     1801 gattcaagag gagaactcga tatgaagagc ttcgcaagac tcacgggcct ggctgccgcg
     1861 gcgctcgtcg ccgtgctctg ctcggccggg ctcgcgcagg cacagctacg cctgccgagg
     1921 ccgagccaga aggcgagcgt cacgcagacc atcggcgtca cggacgtttc cgtcacctac
     1981 agccgccccg gtgtgaaggg gcgcaaaatc tggggcgacc cgcccgcggg cgccgccgcc
     2041 ggcacggcca cgctcgatga cgcgcgctcg cggcccgccg acgccgtcct cgtcccctac
     2101 ggccgcgtct ggcgcgcggg cgccaacgag gccacgctct tccgcgtcac cgacgacgtg
     2161 ctcataaacg gccagccgct cccggccggc ggctacagcc tgcacatgat accggggcgc
     2221 gacgagtgga ctatcatctt caacaaggac gaagggcagt ggggcagctt ctcctacgac
     2281 gagaagaagg acgcgctccg catcaaggtc aagcccgaga cgagtgccgc caaccaggag
     2341 tggctctcct acacgattga gcccgagacg gagagcacgg cgcgcgtcaa cctcaggtgg
     2401 gagaagctga ccgtcccgtt caccgtggag gtgaaggacg tgaaggcttt ggcgatagcg
     2461 aaggcgcgcg aggccctggc cgcggccaag cccgacgact ggcagtcgcc cttgcaggcg
     2521 gcgaactacg cgctcaacaa caagctcgac ctcaacgagg ccatgcgctg ggccgagcag
     2581 tccatcaagg ccaaagagaa cttcaacaac ctcggcctca aggcccgcat actcgccgcg
     2641 cagggcaaga ccgcggacgc agttgcaaca ggcgagaagg ccctacaggt cggcaaggcc
     2701 gccaacgcca acgcgcaggc tatggctaac ttcgagaaga cgctcgccga gtggaagtct
     2761 aaaatgtagg gaaggcggaa ggccgaaggg cgaaggcggt cagggcgagt cgccctgacc
     2821 gccttttctc tttgtgaatg ggttgatggc gagcgccgtg gcgatgacga cgagggcgcc
     2881 gatgacgttg aaccagaggt aggctatctc cgtgcggaag aagcagtaga gcacgactgc
     2941 ctcgcccgcc ccggcgcctg cgaaggcggc ggtgccgccg acgcgcttga agtagaaggc
     3001 caggaggaat atgccgagga ttgtgc
//
LOCUS       DASPKR010000131         9887 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1310373, whole genome shotgun sequence.
ACCESSION   DASPKR010000131 DASPKR010000000
VERSION     DASPKR010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9887)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9887
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1310373"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(218..841)
                     /locus_tag="VD968_03705"
     CDS             complement(218..841)
                     /locus_tag="VD968_03705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13530.1"
                     /translation="MTKLSAFRAALALVCLALAFGCIGRGKYVPLDKEKLKGAGRIYF
                     VPLGDFPPDKVETLVTYYWGKYGLSIETAPPVPISPAAVDAPRRQLIAEQAVALMKQA
                     NPELVKDPEAILIGLTGVDMYIAQYTWQFTFSWRQEGRYAVVSDARMRLGSGALPEDK
                     LDSRLRKMVTKNIGILYYRLPQSDDPRSVLYKDVGGLAELDYMGEEF"
     gene            complement(914..4402)
                     /locus_tag="VD968_03710"
     CDS             complement(914..4402)
                     /locus_tag="VD968_03710"
                     /inference="COORDINATES: protein motif:HMM:NF014214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005615 - extracellular space [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M36 family metallopeptidase"
                     /protein_id="HYE13531.1"
                     /translation="MTLSLAAVLAALAAAPARHSGVAAGPRGVPAVDPNALAAGLRAP
                     TPEQLAAAERLRASHGGRASVRWNALAGSPAVVKDFLTEPFAGTPEEAARAFVAANAA
                     LFGVGPSALVLAEQREALGGYLLRFQQRVGEVDVLGGGLGLVLTKDGRVRMVLGSTFR
                     DAEGAQTSPAISASAAASSARASLEPYAVPPTAIATLPPSSALDELERQLAPALAHGP
                     SLNVFPVADGYRLAWNVLTFSRNPFGVFSTQVDATDGSVLARENLVRRFQGELPYTAD
                     IFPKHPTLANPDTGELKLDERGEPEGMRRVNLRGFNPGTNATGVDGTLAGPRALVRNM
                     LAVKQPFAQAAGGTWHFRQNNPPFESQPNEADDLAEPAGHIDEVGVFFFINYLMEYLD
                     DLHRRGDAAHNPEGEGDFPDAYPNSDRPLVGLAHFPNELGVISDDGPLRRLVDTASPD
                     ALARSLLGLDDAIAVPVTVVASTSEGSRKITVNPTAYGHGYLFNDLAKESGVVYHESM
                     HSISTPIAGFEGLPEGRAIDESQADLWAYALTGDDAVGRYVIRGARFRQRLRAAGQNP
                     EAYTQIRSARSSLKYSQLGTRAGQFFHHHRDGEIFSATMFDLRELLIASEPEKTSARP
                     SLLDGQLAPISKGQDAWERLFLGMLYILSTGAPDTFTGARDALIEADRMLYPSDSNDP
                     ASPGRHEALIWQVFASHEMGVNAAAPNGGRQIISTRVTPFAAAQESTAAPGGVTVAPA
                     SANSLRVSWKPVQGAFAYEVFKRKAGTAGKRQFAGVPAHPYFDGDDSTTGWSHVAYAV
                     APATSYEDRGAVQETFAPAGLSAVSDASGFNELLGTEYAVRALSVNAGGQVGVSDLSA
                     GASVNVKLKDITSAVSTSVSNMVTSGGVTEFDQTLTNNGVGSPDGTAYAPVSFQIVAT
                     SDPSVTVLNADNGGDGRSAAAVFRYDQTLPAGATSAPRRLRFNNPHGLPFTFDAVITA
                     RVRTGASPANGSQPGDGQQSLTAVTETYRGTIVAGDIGLQLADGLTYVDVPFKVCASA
                     RRVRGVLAVTSPSGGTPTLGQIASPGTMPDLDFELRDSAGNVLAVSNNVGSGEEVNAF
                     LTPGETYIYRVVGFLSGPADFQITSTQFVEGSGGCADGTAGATFLPAAQGLIAVTPLR
                     LTINPATRLASAQALN"
     gene            complement(4678..6357)
                     /locus_tag="VD968_03715"
     CDS             complement(4678..6357)
                     /locus_tag="VD968_03715"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HYE13532.1"
                     /translation="MLDLSSRTQKLWRALVALYLITALAASPAPARQSGAAAAPAAAL
                     TDAERGLAERIKAENIKEITTALSAPAMQGRGTGQPGGEMAAQFIADRFKKLGLKPLG
                     DKGSYFQSIKFREFQVTPETSLRVGDSSLKLGEDFYVSHPFSGDKDVSGRLVFVGFGI
                     QTAGRERDDLKGIDVSGKIVVVIEGPPRGVTRDQWRKMKAGFLIKKNLFALGAAGLIM
                     ANSGTEETPYQMLADYMTRRQLEPAGENQLPPQFPPFLGVSDAGAEKLFAASGTTYAQ
                     ALERAHRGEFVSQDLKLQAKVKVKLRNAKATAANVVGYVEGTDAKLKEEAVVYTAHYD
                     AFGVGEDGRVFPGAADNALGVAEMLAVAEALAASPPRRSVVFLAVTGEEYGLHGAEFW
                     VKNPTWKLKQVAANLNFDGIGTEVYGPLKKLVGFGAEHSNLGALLESVAAATGNQVMP
                     DPMPEERSFYRSDHYAFVKRGVPALFLMGAPDIDRQALVARVREYQAKHYHLPTDTVR
                     PEWDWEGPRALAQVGAVLGWRAANADAMPAWLASSPFNRKRGTDEPPPDEP"
     gene            complement(6416..>9887)
                     /locus_tag="VD968_03720"
     CDS             complement(6416..>9887)
                     /locus_tag="VD968_03720"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13533.1"
                     /translation="LHRLRLMGLKLDNGTWTGGGTAAHRSTEIAPRPPEPQPTEQRKQ
                     VTVLFADLAGLSALYEGADAEEMGETLGALWRRVDGVVEEHGGVVDKHVGDTLLALWG
                     AREAREDDPERAVRAALAMQAAASEFVVKEMGARAGANGALAPAGAVAQPVPAAAVGA
                     AATADGSGQQQQGPLRIGISTGLVLLGGSAGAMTATGDAVQVASRLQQAAPVGAVLLS
                     HDTYRHVRGVFSVHPPETMRLEGRAHPLEVYRVKRAKPRAFRVQTRGVEGVETRTVGR
                     EGEMRQLMGAVETVFEERELQVVTVLADAGVGKSRLLYDISNWVELRPDLWYVFNGRA
                     GESMQALPYSLVRDVFSYRFEIQDSDSPSVARRKLEEGLLAMSGAGEGSVAAEEVRMR
                     AHFIGQLIGFDFSESRHLSGILEDARQIRDRAFHYAGQFFADVTRSYPAVLYLDDIHW
                     ADDGSLDFVDYLARNCSRAPMFVLCLARPSLLERRPAWGEGQENHTRLRLQPLSKRES
                     RQLVGEILRRARGVPSELRELIVGGAEGNPFYVEELIKMLIDQRVIVTGAEEWTVDAS
                     RLGQVQVPPTLTGVLQARLDKLTQTEKAVLQRASVVGRVFWDGAVRDLGAKLTGAIRR
                     ETVLDSPGREGGPSSDGVTEVLESLRRKELIYRREASSFAGAIEYTFKHALLRDVTYE
                     SVLRRERREYHRRAAEWLARHSGGRAGEYAGVVAEHYERAQDSAAAADWYGRAGRQAR
                     ETYAPETAIKFYRKALEFLPAGAGAGDEASRLARRVEWNEGLGEVLRVQARYAEAVEA
                     YAAMRAAAEASGDNVAQARAWNETALVRSSQGDIRATYESTQHAEALARTAGESAEAR
                     EELARALNLQSQASSRLGDSRAAMMLADRALVISTELGEAGRRVRADSLKSLGMAYHM
                     VGRFEEADRYKEQALQMFRELEDRLRVGNLLNSLGETARLRGDYRAAFARYQEALAIA
                     REVGNRNGEILYFSNLGGARVGLGEHEAAEADLRQAIEMGASAGYIGLSENYRFLAES
                     LAGQGRLDEALEAALRALELGREVDNQEHVGEAWRALGLVASRRGAAVEVGGERYDAG
                     RCFAESVGVFERINMEAEHARTLRDWARHELAHGDRDEARRLWQRALDTFTRLRMTLE
                     VERMAEEGRN"
BASE COUNT         1387 a         3399 c         3504 g         1597 t
ORIGIN      
        1 ggctcacaag ctcgcacctg ttgtagtcaa tgccggcgtc catcccgccg tagcgataaa
       61 cctcctcgaa cccggacgcc ttcaggtctt cgatgacgcg gttccacgtc cccgtctcga
      121 cgttctcaat cctgtgccgc acccgcgccc cttccggccc gcctcctgtg ccggccggcc
      181 cggtcttgaa gtcgaacctt actccgccgg gccggcgtca gaactcctcg cccatgtaat
      241 cgagctcggc gaggccgccc acgtccttgt agaggacgct gcgcgggtcg tcgctctgcg
      301 gcaggcggta gtaaagaatc cctatgttct tagtaaccat cttcctcagc ctgctgtcga
      361 gcttgtcctc ggggagggcg ccggagccca gccgcatcct cgcgtcggac acgacggcgt
      421 acctgccctc ctgccgccaa ctgaacgtga actgccaggt gtactgcgcg atgtacatgt
      481 ccacgcccgt caggccgatg agtatcgcct ccgggtcttt gaccagctcg gggttggcct
      541 gcttcatgag cgctacggcc tgctcggcga ttagctgccg gcgcggggcg tccaccgcgg
      601 cggggcttat ggggacgggc ggagctgtct cgattgacag gccgtacttg ccccagtaat
      661 aggtgactaa agtttccacc ttgtcgggcg ggaagtcccc gagcgggacg aagtatatcc
      721 tccccgcgcc cttcaacttc tccttgtcta acgggacgta cttcccgcgg ccgatgcagc
      781 cgaaggcgag cgcgaggcaa accagcgcga gggccgcgcg aaacgcggag agcttcgtca
      841 tgagcacatt ctaacggctc gcgcgcgaaa acgggcagcc cttcggccgc ccgccttcgc
      901 gttcagaggg agttcagttg agcgcctgcg ccgaggcgag cctcgtcgcg gggttgattg
      961 ttaagcgcag gggcgtgacc gctatgagcc cttgcgccgc cggcaggaaa gttgcgcccg
     1021 cggtgccgtc cgcgcagccg cctgagcctt cgacgaactg cgtgctcgtg atctggaagt
     1081 cggcggggcc gctgaggaag ccgacgacgc ggtagatgta ggtctcgccc ggcgtcagga
     1141 aggcgttcac ctcctcgccg gagccgacgt tgttggagac ggcgagcacg ttgcccgccg
     1201 agtctcgcag ctcgaagtcg aggtcgggca tcgtgccggg cgaggctatc tgcccgagcg
     1261 tcggcgtgcc gcccgacggc gaggtgacgg cgagcacgcc gcgcaccctg cgcgcgctcg
     1321 cgcagacctt gaacggcacg tcaacgtatg tgagcccgtc ggctagctgt aggccgatgt
     1381 cgcccgcgac gatagtgcct cggtaagttt cggtcacggc cgtcaggctc tgctggccgt
     1441 cgccgggctg gctgccgttc gctggcgagg cgccggtgcg cacgcgcgct gtgattacgg
     1501 cgtcgaaggt gaagggcagg ccgtgcgggt tgttgaagcg caggcggcgc ggcgcggagg
     1561 tcgcgccggc cgggagcgtc tggtcgtagc ggaagacggc ggccgcgctt ctgccgtcgc
     1621 cgccgttgtc ggcgttgagc accgtcacgc tcgggtcgga ggtggcgact atctggaagc
     1681 ttacgggcgc gtaggccgtg ccgtccggcg agcccacgcc gttgttcgtg agagtctggt
     1741 cgaactccgt gacgccgccc gaagttacca tgttcgagac gctggtgctg acggccgacg
     1801 tgatgtcctt cagcttaacg ttcaccgacg cgcccgcgct caagtcggag actcctactt
     1861 gcccgcccgc gttgacggag agggcgcgca cggcgtactc agtcccgaga agctcgttga
     1921 agcccgaggc gtcggagacg gcgctcaggc ccgccggagc gaaggtctcc tgcaccgcgc
     1981 ccctgtcctc gtagctcgtc gcgggcgcga ccgcgtaagc gacgtggctc cagcccgtcg
     2041 tcgagtcgtc gccgtcgaaa tacgggtggg cggggacgcc cgcgaactga cgctttccgg
     2101 ccgtgcctgc cttccgcttg aagacttcat acgcgaacgc gccctgcaca ggcttccacg
     2161 agacgcggag cgagtttgcg gaggccgggg cgaccgtgac gccgcccggc gcggccgtgc
     2221 tctcctgagc ggccgcgaac ggcgtgactc tcgtggagat gatctggcgg ccgccgttgg
     2281 gcgccgcggc gttcacgccc atctcgtgcg aggcgaagac ctgccagatt agcgcctcgt
     2341 ggcggcccgg cgaggccggg tcgttcgagt cagacgggta gagcatgcgg tcagcctcga
     2401 tgagcgcgtc gcgcgcgccc gtgaaggtgt cgggcgcgcc cgtgctcagt atgtagagca
     2461 tgcctaagaa gagtcgctcc cacgcgtcct gccctttgct tatcggcgcg agttgcccgt
     2521 cgaggagcga ggggcgtgcg gaggttttct ccggctcgga cgcgatgagc agctcgcgca
     2581 ggtcgaacat tgtggcggag aaaatctcgc cgtcgcggtg gtggtggaag aactggccgg
     2641 cgcgcgtgcc gagctgcgag tacttgagcg acgagcgcgc cgagcgaatc tgcgtgtagg
     2701 cttcggggtt ctgccccgcg gcgcgcaggc gctggcggaa gcgcgcgccg cgtatgacgt
     2761 agcggcccac ggcgtcgtcg cccgtcagag cgtaggccca caggtctgcc tgcgactcgt
     2821 caattgcgcg cccctcgggc aggccctcga agccggctat cggcgtcgag atcgagtgca
     2881 tgctctcgtg atagacgacg ccgctctctt tggcgaggtc gttgaagagg tagccgtggc
     2941 cgtaggccgt cgggttgacg gtaatcttcc gactgccctc ggatgtgctc gcaacgacgg
     3001 tgaccgggac ggcgatggcg tcgtcgaggc cgaggagcga gcgcgcgagc gcgtcggggc
     3061 tcgccgtgtc aacgaggcgg cggagcggcc cgtcgtcgga aatcacgcca agctcgttcg
     3121 ggaagtgggc gagcccgacg agcggccggt cgctgttcgg gtatgcgtcc gggaagtcgc
     3181 cctcgccctc ggggttgtgc gcggcgtcgc cgcggcggtg caggtcgtcc aaatactcca
     3241 tcaggtagtt gatgaagaag aagacgccga cttcgtcaat gtggccggcg ggctcggcga
     3301 ggtcgtccgc ctcgttcggt tgtgactcga acggcgggtt gttctggcgg aagtgccagg
     3361 tgcctccggc cgcctgcgcg aaaggctgct tgacggcgag catgttgcgc accagcgccc
     3421 gcggcccggc gagcgtgccg tcaacgccgg tcgcgttcgt gccgggattg aagccgcgaa
     3481 ggtttacccg ccgcatccct tcaggctcgc cgcgctcgtc gagcttcagc tcgcccgtgt
     3541 cggggtttgc gagcgtcggg tgtttgggga agatgtcggc cgtgtagggc agttcgccct
     3601 ggaagcggcg cacgaggttc tctcgcgcga gcacgctgcc gtccgtagcg tcaacctgcg
     3661 tcgagaagac gccgaagggg ttgcgcgaaa acgtcaggac gttccacgcg aggcggtagc
     3721 cgtcggcgac ggggaagacg ttgagcgaag gcccgtgcgc gagggccggc gcgagctggc
     3781 gctcaagctc atcgagcgcg gaggagggcg ggagcgtagc gattgccgtc ggcgggacgg
     3841 cgtaaggctc aagagacgcc cgcgcgctcg acgcggcggc cgacgccgag atcgcgggcg
     3901 aggtctgcgc cccctcggcg tcgcggaagg tcgagccgag caccatcctg acccgcccgt
     3961 ctttcgtcaa cacgagcccg agcccgccgc ccagcacgtc cacttcaccg acgcgctgct
     4021 ggaacctgag caggtagccg ccgagcgcct cacgctgctc ggcgaggacg agcgcggacg
     4081 gccctacgcc gaagagcgcg gcgttggcgg cgacgaaggc gcgcgcggcc tcctcgggcg
     4141 tgcctgcgaa gggctccgtt agaaagtcct tgacgacggc gggcgagccc gcgagcgcgt
     4201 tccagcgcac cgacgcgcgc ccgccgtgcg aggcccggag tctttcggcg gccgcgagct
     4261 gttcgggcgt aggcgcccgc aggccggccg ccagcgcgtt cgggtcaacc gcaggcacgc
     4321 cgcgggggcc ggcggctacg cccgaatgac gcgcgggcgc cgccgcgagc gccgccagca
     4381 cggcggcgag agacagagtc aaaaaagatt tggctttggg gcggaagcgt tgcggcctca
     4441 tcgtctgtaa cctccggctt tcgttggcga ggggaaatcg agcgtcgcgc tgtggcgaca
     4501 ggtacagctt attcaggggg cttgaggaat tcttgagctt gcggggaacg gctcggcgaa
     4561 gaacgccggc ctccccgtca acgccccgtc atacgtggaa tggcgagctt ggcgggcgcg
     4621 cggggaacgt tccccgcgcg ccctccgcgc tcatgctcgc ttctgtcgcc cccggcgtca
     4681 tggctcatcg ggcggaggct cgtccgtgcc gcgcttgcgg ttgaagggcg aggaggcgag
     4741 ccaagcgggc atcgcgtcgg cgtttgcggc ccgccagccc aggacggcgc cgacctgcgc
     4801 cagggcgcgc ggcccctccc agtcccactc cggccgcacg gtgtctgtgg gcaggtggta
     4861 gtgcttcgcc tggtactccc tgacgcgcgc gacgagcgcc tgcctgtcta tgtcgggcgc
     4921 gcccatcagg aagagcgccg gcaccccgcg tttgacgaag gcgtagtggt cggagcggta
     4981 gaaggagcgc tcctccggca tcgggtcggg catgacttgg ttgcccgtcg ccgccgcgac
     5041 cgattcaagg agcgcgccca gattcgagtg ctcggcgccg aagccgacga gcttcttgag
     5101 agggccgtac acttccgtgc ctatgccgtc gaagttaagg ttggcggcca cctgcttgag
     5161 cttccacgtc gggttcttca cccagaactc ggcgccgtgc aggccgtact cctcgcccgt
     5221 gacggcgagg aagacgacgg agcggcgcgg cggcgaggcc gcgagcgcct cggcgacggc
     5281 gagcatctcc gcgacgccca gcgcgttgtc ggccgcgccc gggaagacgc gcccgtcctc
     5341 gcccacgccg aaggcgtcgt agtgcgccgt atagacgacg gcctcctcct tgagcttcgc
     5401 gtcagtcccc tcgacgtagc cgacgacgtt tgcggccgtc gccttcgcgt tcctgagctt
     5461 gaccttcacc ttcgcctgaa gcttcaagtc ctgcgagacg aactcgccgc gatgcgctcg
     5521 ctcgagggcc tgcgcgtagg tcgtccccga ggcggcgaag agcttctccg cccccgcgtc
     5581 gctcacgccg aggaagggcg ggaactgcgg ggggagctga ttctcgccgg ccggctctaa
     5641 ctgccggcgc gtcatgtagt cggccagcat ctggtagggc gtctcctccg tgccggagtt
     5701 cgccatgatg aggcccgcgg cgccaagcgc gaacaggttc ttcttgatga ggaagccggc
     5761 cttcattttc ctccactggt cgcgcgtcac gccgcgcggc ggcccctcga tgacgacgac
     5821 tatcttgccg gaaacgtcta tgcctttgag gtcgtcgcgc tcgcgccccg ccgtctgtat
     5881 gccgaagccg acgaagacga ggcggccgct cacgtcctta tcgccgctga aggggtgcga
     5941 gacgtagaag tcctcgccga gctttagcga cgagtcgccg actctcaaag aggtctcggg
     6001 cgtgacctgg aactcgcgga acttgattga ctggaagtaa gagcccttgt cgccgagcgg
     6061 cttgaggccg agcttcttga agcggtcggc gatgaactgc gcggccatct cgccgccggg
     6121 ctggcccgtg ccgcgcccct gcatggcggg cgccgaaagg gccgtcgtaa tctccttgat
     6181 gttctcggcc tttatgcgct cggcgaggcc gcgctcggcg tcggtgaggg cagccgccgg
     6241 agcggccgcc gcccccgact gccgggctgg cgccggtgag gccgcgagcg ccgtgattaa
     6301 gtagagcgcg acgagcgcgc gccagagctt ctgcgtgcgg gaacttaagt ctaacaagct
     6361 tgatgactcc tgtgacttcg gtctggggtg aaggggcggg ccggggccgc gctgtttaat
     6421 tccggccttc ctctgccatg cgctcgactt cgagcgtcat ccgcaggcgg gtgaaggtgt
     6481 cgagggcgcg ctgccagagg cggcgggcct cgtcgcggtc gccgtgcgcc agctcgtggc
     6541 gcgcccagtc gcgcaaggtg cgggcgtgct cggcctccat gttgatgcgc tcgaagacgc
     6601 cgacgctctc ggcgaagcag cggccggcgt cgtagcgctc gccgccgacc tctacggccg
     6661 cgccgcgccg cgaggccacg agcccgagcg cgcgccacgc ctcgcctacg tgctcctggt
     6721 tgtcaacctc gcggcccaac tccagcgcgc gcagggccgc ttcgagcgcc tcgtccaggc
     6781 gcccctgccc ggcgagcgac tcggccagga agcggtagtt ctccgaaagg ccgatgtagc
     6841 cggcggaagc gcccatctct atcgcctgcc gcagatccgc ctcggccgcc tcgtgctccc
     6901 cgagccctac gcgcgcgccg ccgaggttgc tgaagtagag aatctcgccg ttgcggttcc
     6961 cgacctcgcg cgcaatcgcc agcgcctcct ggtagcgcgc gaaggccgcg cggtagtcgc
     7021 cccgcagccg cgccgtctcg ccgaggctgt tgaggaggtt gccgacgcgc aggcggtctt
     7081 ccagctcgcg gaacatctga agcgcctgct ccttgtagcg gtcggcctcc tcgaagcgcc
     7141 cgaccatgtg gtaggccatg cccagagact tgaggctgtc ggcgcgcacg cgccttccgg
     7201 cctcgcccag ctcggtcgag atgacgagcg cacggtcggc gagcatcatg gccgcgcggg
     7261 agtcgccgag gcgagagctg gcctggctct gtaggtttaa ggcgcgggcg agctcctcgc
     7321 gcgcctcggc cgactcgccc gccgtgcgcg cgagcgcctc ggcgtgctgc gtgctctcgt
     7381 aggtcgcgcg tatgtcgccc tggctgcttc gcaccagcgc cgtctcgttc cacgcgcgcg
     7441 cctgcgcgac gttgtcgccg gaggcttcgg ccgccgcgcg catcgcggcg taggcctcga
     7501 ccgcctcggc gtagcgcgcc tgcaccctca agacctcgcc gagcccctcg ttccactcga
     7561 cgcggcgggc gagccgcgaa gcctcgtcgc ccgcgccggc gcccgctggg aggaattcga
     7621 gcgccttgcg gtagaactta atggccgtct cgggcgcgta ggtctcgcgc gcctgccggc
     7681 cggcgcggcc gtaccagtcg gccgcggccg cggagtcctg cgcgcgctcg tagtgctcgg
     7741 cgacgacgcc cgcgtactcg cccgcgcgcc cgccgctgtg gcgcgcgagc cactcggcgg
     7801 cgcggcggtg gtactcgcgc cgctcgcgcc tgagcacgct ctcgtaggtc acgtcgcgga
     7861 ggagcgcgtg cttgaaggtg tactcaatgg cgccggcgaa ggacgaagcc tcccgccggt
     7921 agatgagctc cttgcgtcgc agagactcca aaacttccgt gacgccgtcc gacgagggcc
     7981 cgccctcgcg ccccggcgag tcgaggactg tctccctgcg tatggcgccc gtgagcttcg
     8041 cgcctaagtc gcgcacggcg ccgtcccaga aaacgcggcc gacgaccgag gcgcgctgca
     8101 aaacagcctt ctcggtctgc gtcagcttgt cgaggcgggc ttgcagcacg cccgtcaggg
     8161 tcggaggcac ctgaacctgc cccagacggc tcgcgtccac cgtccattcc tctgccccgg
     8221 tgacgatgac gcgctggtca atgagcatct tgataagctc ttcgacatag aaggggttcc
     8281 cctcggcccc gccgactatc agctctcgga gttccgaagg cacgccgcgc gcgcgcctga
     8341 gaatctcgcc gacgagctgg cggctctccc tcttcgagag cggctggagg cgcagccgcg
     8401 tgtggttctc ctgcccctcg ccccacgcgg gccggcgctc caggagcgac gggcgcgcga
     8461 ggcagaggac gaacatcggc gcccgcgagc agttgcgcgc gaggtagtca acgaagtcga
     8521 gcgagccgtc gtcggcccag tgtatgtcgt cgaggtagag cacggcgggg taggagcgcg
     8581 tcacgtcggc gaagaactgg ccggcgtagt ggaaggcgcg gtcgcgtatc tgtcgcgcgt
     8641 cctcgagtat gccggagagg tggcgactct cggagaagtc gaagccgatg agttggccta
     8701 tgaagtgcgc gcgcatgcgc acctcctcgg cggccacgga gccctcgccc gcgccgctca
     8761 tggcaagcag cccctcttcc agcttgcggc gcgcgaccga gggcgagtcg ctgtcctgaa
     8821 tctcgaagcg gtaggagaac acgtcgcgca cgagcgagta gggcagggcc tgcatggact
     8881 cgcccgcgcg cccgttgaag acgtaccaga ggtctggccg cagctcgacc cagttgctta
     8941 tgtcgtaaag cagccgcgac ttgccgacgc ccgcgtccgc gagcacggtc acgacctgaa
     9001 gctcgcgctc ctcgaagacg gtctcgacgg cgcccatgag ctgcctcatc tcgccctcgc
     9061 gccccaccgt gcgcgtctcg acgccctcca ccccgcgcgt ctgcacgcgg aaggcgcgcg
     9121 gcttggcgcg cttcacgcga tagacttcga gggggtgcgc gcgcccttcg agccgcatcg
     9181 tctccggcgg gtggacgctg aagacgccgc gaacgtggcg gtaggtgtcg tgcgagagaa
     9241 gcaccgcgcc gaccggcgcc gcctgctgaa gccggctcgc gacctgcact gcgtcgcccg
     9301 tggccgtcat tgccccggcc gagccgccga gcagcacgag ccccgtgctt atgcctatcc
     9361 gcagaggccc ctgctgttgc tgcccggagc cgtcagcggt cgccgccgcg ccgactgccg
     9421 ccgccgggac gggctgggcg accgcgccgg cgggggcgag cgcgccgttt gcgcccgcgc
     9481 gcgcgcccat ctccttgacg acgaactcgc tggcggccgc ctgcatggcg agcgccgcgc
     9541 gcacggcgcg ctccgggtcg tcctcgcgcg cctcgcgcgc cccccagagc gcgaggaggg
     9601 tgtcgcccac gtgcttgtca acgacgcctc cgtgctcctc cactaccccg tcaacgcgcc
     9661 gccacagggc gcccagcgtc tcgcccatct cctccgcgtc ggcgccctcg tagagcgcgg
     9721 agaggccggc gaggtctgcg aagaggactg tgacctgctt gcgctgctct gtgggctgcg
     9781 gctcgggcgg gcgcggtgct atctcggtcg agcggtgcgc ggccgtgccg ccgcccgtcc
     9841 acgtcccgtt gtcgagcttg aggcccatga gcctgagcct gtgcagg
//
LOCUS       DASPKR010000132        18582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_275347, whole genome shotgun sequence.
ACCESSION   DASPKR010000132 DASPKR010000000
VERSION     DASPKR010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 18582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18582)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18582
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275347"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..492
                     /locus_tag="VD968_03725"
     CDS             <1..492
                     /locus_tag="VD968_03725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13534.1"
                     /translation="LLAPALGLAAAVALHAGWNAAAFFAITYESGAYVVLTYLLVMVP
                     VFVGLLAVVVAALRREGRLLREHLRCDLERGLLAREEYERLCSLRGRASASLGALAGG
                     GGIKAWRARTRLNRAASELAFLRSRVARGLAPAGGPCAEREAEFVRQIQGLQRELAAG
                     GRR"
     gene            508..1284
                     /locus_tag="VD968_03730"
     CDS             508..1284
                     /locus_tag="VD968_03730"
                     /EC_number="3.1.4.17"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004114 - 3',5'-cyclic-nucleotide
                     phosphodiesterase activity [Evidence IEA];
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-nucleotide phosphodiesterase"
                     /protein_id="HYE13535.1"
                     /translation="MKIKLLPSTIDAEGRATAEQRLSCFLVDDRVTIDAGSIAIALDD
                     SQRQRVRDVIITHPHMDHIATLPIFVDDLFGTLSEPVRVHAAEEVCRMIERNVFNGTV
                     YPPFHKFSNSRTRVMEFVPFRAGEEFRAAHLRVKAVAVNHIVPTYGMLLTDGERTIAF
                     SSDTSATEEFWRLANSAPRLDALLIEASFPNSMSALAEKSGHLTPASLARELGKLEHE
                     GLDILAVHLKPSFRAQLVEELAGLGVPRLRAMEPGREYSW"
     gene            complement(1376..3943)
                     /locus_tag="VD968_03735"
     CDS             complement(1376..3943)
                     /locus_tag="VD968_03735"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pre-peptidase C-terminal domain-containing
                     protein"
                     /protein_id="HYE13536.1"
                     /translation="MKRARILRPAAALRRPAATLTLLTLAALATLGGAGWLGASGARA
                     AAPQKARKTLPGRTPQALAGPKSDAKQNVIRRSERASRAKAAAAGEAAAQPRADRACV
                     ANTINVGQTINAQLTTDDCALGDGTVYDSYTFQGTAGNQIAVTMTSTQFDTYLFIIAD
                     DGETVLNENDDSSGSTTNSRIPPAGMVTLPYTGTYEILANAFDPGDTFGTYTITLTGA
                     GQCASAGSITAGQTVNGALSTSDCKLLDETFYDLYTFNGTAGQRIAISLNSTAFDAYL
                     YLLDPAFTVLGEDDDDSGVGGTLNSRLPDGTGFITLPYTGTYLIAANNLGTQDQPSPT
                     GSYTLTVTAAAGECPTTPINVGQTVNGTLSQGECLLTDETLFDAYTFTGTAGQQIAVT
                     MTSTAFDAFLYLLGPDKAILAQNDDGGGGTNSRIPATTGFFTLPSNGTYYILANTLPL
                     GPSQSDPDPASPTGNYTLALTEPAPPVADVQFSAANYPASEDAPNTVTITVTRTGPTT
                     GESVVNYATSNGTANDRSDYTAAYGRLRFAAGETSKTFDVFITDDAFDEPDETFTVSL
                     SSPTGANLGAQSSATVTIDSNDVGNGPSPVKAASFNAEFFVRQHYRDFLNRNADAGGL
                     AFWTNQLSNCSNPPPADLLVCRINVSAAFFLSIEFQETGYLVYRTYKAAFGNLPNAPV
                     PVRLREFLADTRQIGEGVIVGTPGWPEKLEANKDAYMLEFVGRPEFLAAYPSTMTPAQ
                     FVDALNANAGGALSQEERDQQVAALSANNTAQGRADVLRAVAEDEQLRQAEFNKAFVL
                     MQYFGYLRRNPNDAPDTGFGGYNFWLGKLNEFQGNFINAEMVKAFITSIEYEQRFGQ"
     gene            complement(4207..4536)
                     /locus_tag="VD968_03740"
     CDS             complement(4207..4536)
                     /locus_tag="VD968_03740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13537.1"
                     /translation="MTKGRGRSWAGWLAGAAGLAAGAVGAVVLVRRIKRAPGEGRKSI
                     YPEYNRGAADRWARPGMSATFRAELMPGRSRQERTFRVAEVLASGRVRLEGFAGEHTE
                     TEFEPVR"
     gene            complement(4658..4933)
                     /locus_tag="VD968_03745"
     CDS             complement(4658..4933)
                     /locus_tag="VD968_03745"
                     /inference="COORDINATES: protein motif:HMM:NF024585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HYE13538.1"
                     /translation="MTYVVCEPCVNCRYTDCVVVCPVEAFHLDDNAVWINPETCIDCD
                     ACVPECPVEAIFAEDKVPDEWAHYTAINAEKSLSGLPIISEKLEPLC"
     gene            complement(5098..5619)
                     /locus_tag="VD968_03750"
     CDS             complement(5098..5619)
                     /locus_tag="VD968_03750"
                     /inference="COORDINATES: protein motif:HMM:NF019241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HYE13539.1"
                     /translation="MRDAVAENFLAEARGYLLGDYLPKIERCLERLTDEQIWWRAGEQ
                     SNSVGNLTLHLAGNARQWVVCGVGGGEDRRVRDAEFAARGGATREELRALLRSTLEEV
                     DAVLARLGPAELQEGRRIQGLDVTVLGAVFHVVEHFSMHTGQIILLTKLLTGTDLAFY
                     SFPGNDARREWER"
     gene            complement(5624..5812)
                     /locus_tag="VD968_03755"
     CDS             complement(5624..5812)
                     /locus_tag="VD968_03755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13540.1"
                     /translation="MKKSSAKKGPRAGGGRSLQASVRKPVAPPGHPIARAKPEERAHP
                     AERKAKHKRPPGDGEGVE"
     gene            complement(6072..6305)
                     /locus_tag="VD968_03760"
     CDS             complement(6072..6305)
                     /locus_tag="VD968_03760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13541.1"
                     /translation="MKKKTPIKVIKRDERARQQKQATQDVAAERKSAQETARDMVATV
                     TQWVNEFQQKRRTETARAIKTLFADGTPQASKA"
     gene            6884..7786
                     /locus_tag="VD968_03765"
     CDS             6884..7786
                     /locus_tag="VD968_03765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13542.1"
                     /translation="MTVALPTVAMRLSELTILYLAAAAPFGVAHYASRRGGGGLHARA
                     LLKSTAAALAWPVMVTLLLLRRSREAESGGAHDAAQAPDERRVEGAKRATVNALRKVE
                     DVCEEAGASEGEAERHAFFAARECVERYTGLALACAASSSDAGPSHREMELCRIAGRA
                     GDDLLVAGRCAHRRNVTRLVAHRERARSELVHALAGVRELTFALEGAAAGRASEALLG
                     ALARAIELLSLFDDRETVVRAARLLDAECARLRRLGGEAGAFEAAPLAGRQEGGVGCT
                     TQAEATAFATTLRRTTTRASASTG"
     gene            7705..8349
                     /locus_tag="VD968_03770"
     CDS             7705..8349
                     /locus_tag="VD968_03770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13543.1"
                     /translation="MYDTGGSHSVCDNAPAYYDARERVNWLKGELARDERRAALARNG
                     DDEAAAQLMLKPVATEDAYRWFGTFLGLFPPAAIFGRIFQAPFARGDYAWLGFLCLLA
                     LALCCSVGRSVGGRLGQKVDNPRARTAVMTLLAALPVAIAWGVITGGTGGLVFFGIGA
                     LVGPFFAIPVALAGFLAFMQLHRLLSRGGMIEERHLFPLTFGLPCVIAAAILGM"
     gene            8439..10235
                     /locus_tag="VD968_03775"
     CDS             8439..10235
                     /locus_tag="VD968_03775"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE13544.1"
                     /translation="MLLALLLLSLFTLVLLGFYVFVAAPRSRAHQTFAAFIACLALWT
                     VNDIVMWGFGGGEALARWWASTSFVLSLLLQFSLVVFAWVFPEGGGVPARRAAVLFAP
                     GAVLVPAALAGMMWDEISFDGAAFRIRLTPLAYAFGLYIYGLFAYGFALLYRKYRRYR
                     GGLWGQQLGAILWALVITATLKTVANIALPLAGVYTLLPVGSVFVLVGVIIYAYAITN
                     FKLFSLQSALDQFRLFPIAYKVALSIAAVAVLSFALFQIPIVWWSFAGQTAEAWKRYL
                     VFSVVTALVPNLVLVALVIRIISRPLRRLTEAAVDVAGCGYGTQVELKSNDEVGLLAA
                     SFNEMSRKMAEDIERLRALNEQLIRTEKLAAAGTLAAGVAHEVNNPLASISSLIQILQ
                     TRPLTPENEAETREMLRLAQTQIARITQVLRDMMDFARQRPPARAPLDLSRTVEASLR
                     LASFDKAFKRLRVSAEFDPRAPLVAADAGQMQQVFLNLLLNARDATPDGGDLRVKTFY
                     DEAAGEVVAEIEDTGHGVAPEDMAHIFDPFFTTKGTAGAGLGLAVCYGIVTAHGGRIE
                     VGPAAGGGTVARVALPVRERADGGGAANQLTG"
     gene            10243..11610
                     /locus_tag="VD968_03780"
     CDS             10243..11610
                     /locus_tag="VD968_03780"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE13545.1"
                     /translation="MTTTTPLILIAEDEDLMRAIISRLLGEAGYRVAAVASAEEALEV
                     FAAEDVAVTLTDIRMAGMDGLALLDRVKAIDPEALVIVMTAYSSVDSAVAALRKGAYD
                     YVTKPFVNEDLLQSVKNAIRQRELFRENRLLRRELDSRYSFSEIVGTSEALQQVFRLV
                     EKVAATSTNILIYGESGTGKELIARAIHHNSPRSGRPFVAVNCGALPESLLESELFGH
                     TKGAFTGAAAARAGLFRSAEGGTVFLDEIGEISPAMQVRLLRAVQEHEVTPVGSSAPV
                     QFDARIICATNRDLEREVTEGRFREDLFYRLNVIEVHLPPLRERREDIPLLVRHFVTR
                     TAREQQQVEKPVEPAAMTALINYNWPGNVRELQNAVERAFTLSGERLDLESLPPRVRD
                     AAAKAGPESVRDPDGLRPTLAEIERRHILDTLAAVNQDKARAANILGIDLSTLYRKLK
                     RYDAV"
     gene            12019..15348
                     /locus_tag="VD968_03785"
     CDS             12019..15348
                     /locus_tag="VD968_03785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13546.1"
                     /translation="MTKNARALAASLNREIVDDQPDRLSIHTHRIRLTQANLPYQPVD
                     GKRLPSEKHFAVYADQIVLEGVLQNPGRNIELHAREIIIDKPATLDVAGAYAEKDFKP
                     GDVPTQKDAKPGADGTDGENATPGGNAGSIVIDAHHLVNKTSGPRTQTVAELNAVGSQ
                     ILAEHPLKIDDTATLPAIEIGRKKIYDNYEVVITLENGRVEGLSHLTLESARADRTIN
                     RIALRLTLSGLTVTGTTQFTGNRRLATQAFACKIDASATLKTDGSVSDLRSDLSFVSD
                     TPIKLDMQNPDGTLQAGALNTIRDRITAHIGSGGIETLVKAFGSRLGGSALTLLAGGG
                     RGGRGQDGHAGNRGEAGPDGAKTSKHGVETDGGYGFPEEAIGKNGSQGGRAGSPGLSA
                     DGGKGGRIALNVMLPLELSAVYGISGGDGGVQASPGERGPGGPGGTGAVCHMYNAKTG
                     RPIDDMQAPDGKEGPLGDVAKSTGSKGSPGASGEPLKFNGAPYTGGTVPACTFAGLAQ
                     ALSLSQLLITQNATDQDFLNAKKEEELVAVADGYTWLININQPFTDSTITIDTARVSK
                     PEQQVRARIHNSAVVSLMRLQQGLDYYGHSYNWTPVLNLTNLLARTSEIIQLGKVVED
                     QFNRYLDKKLTDKERMKAFGQAKEEIDSKLAKFVAEIEKLKPQIESLWTEVEKHSEAM
                     RRQRTLLLEGELKFKDELIKYLREQNDLTFEAFLDILGTVIGCAGGVVEGIGGIKTAI
                     NALKKAEEFSKQVKGVVEIFKKAKATIDNISKAYSSVKDAFDDGNPNAAKILVEGEEF
                     DKMLKEYLGKFDAAGELRKAMDYYLTLAQARNMAAYNYTTLVAQMLTIQAQHDQMYQG
                     IQHINAEIAAYQDNVLPIYTAYLKDAYEDVQRNLLRNIYQENRAYQYWSLKNRQLKTD
                     DLNIATLTKTHADLISDIDGYREESDSYSPFNQKVIISAERYPNEFAAMRESRVLTFE
                     LDIQQEPGFQNMRYIIARKFKLEFPEVAGGKHVLFLNLVHSGEAVLNSDTNLDKPGAL
                     HVFSHRPRVAPYKIDYEHPENTAGGNLGEDSQGYIGLSPFTLWRLDFNPKGNEWLDLS
                     TLKTVVLTFSGRMLGPKARLP"
     gene            complement(15543..15773)
                     /locus_tag="VD968_03790"
     CDS             complement(15543..15773)
                     /locus_tag="VD968_03790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13547.1"
                     /translation="MDELIRQVTERAGISEAQARSAVETVMGFLKNRLPEPIGGQLEG
                     FLGGAGGAVGGVADKAGDVLGGLGGMFGGKKD"
     gene            complement(15808..16074)
                     /locus_tag="VD968_03795"
     CDS             complement(15808..16074)
                     /locus_tag="VD968_03795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13548.1"
                     /translation="MNERDFFDERQETKRASYSCPHCRERADYDVRWLRRTKKAQPPR
                     GMNEQQKAQFSKARDYMVRVDDTLTCARCRRRFDIPNFQTVVFI"
     gene            complement(16095..16358)
                     /locus_tag="VD968_03800"
     CDS             complement(16095..16358)
                     /locus_tag="VD968_03800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13549.1"
                     /translation="MVEAVGWASSFILVLTIAKQVYKQWQEGRSEGVSKWLFVGQISA
                     SLGFTVYSWLVNNWVFVVTNSLMLVNGLLGLLIVIRHRRRASA"
     gene            complement(16426..16785)
                     /locus_tag="VD968_03805"
     CDS             complement(16426..16785)
                     /locus_tag="VD968_03805"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE13550.1"
                     /translation="MKKILVVEDDEVARELMRMSLVRQGYEVLSAEDGVRGYEMAVAA
                     RPDLIVTDVWMPAADGIHLVRRVRDTPGLESTPIIVTTGFGTGSASITLAQGADAYEP
                     KPVNPVSLIETVRRLLS"
     gene            complement(16814..17155)
                     /locus_tag="VD968_03810"
     CDS             complement(16814..17155)
                     /locus_tag="VD968_03810"
                     /inference="COORDINATES: protein motif:HMM:NF017922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HYE13551.1"
                     /translation="MSDYAPRRGPAVEPREIMQESDAGLRVTWADGRVCRYGAPQLRR
                     LCPCAQCVNEFTGERVLKAESVPEDLKIEDVDIVGRYALNFRWSDGHDTGIYSFRYLR
                     EVCEAGEEGAA"
     gene            complement(17165..17497)
                     /gene="ytxJ"
                     /locus_tag="VD968_03815"
     CDS             complement(17165..17497)
                     /gene="ytxJ"
                     /locus_tag="VD968_03815"
                     /inference="COORDINATES: protein motif:HMM:TIGR04019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol system redox-active protein YtxJ"
                     /protein_id="HYE13552.1"
                     /translation="METDFKRVADSGALEELFARSHEAPVLVFKHSNACPISAAAYRQ
                     MKQFKDDVSLIVVQESRELSREVESRTGVRHETPQALVLRNGQAAWTASHFNITADAV
                     ERAMKENQ"
     gene            complement(17589..>18582)
                     /locus_tag="VD968_03820"
     CDS             complement(17589..>18582)
                     /locus_tag="VD968_03820"
                     /inference="COORDINATES: protein motif:HMM:NF025684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4384 domain-containing protein"
                     /protein_id="HYE13553.1"
                     /translation="MRNSQMCLKFLAAAALLALVCGASATARQQGQDEQKVVEDFVGS
                     RGVSFDEPAASTAAEKPKPRPTPRPTPRPQKQTGAGKAGTASAKTKKAGAGQSSTSGS
                     QTAAGPSIIQQAGGPASSGAGGARPVGLGYTIYMKDRLGGLSVAEPTRQFKSGDAIAI
                     ALETNTDGYLYVFNAEDGRDPVMLFPHVLLDGGSNRVSAHERVTYPADVNYSFEFDDR
                     PATEHLYIVVSRRPLEGVPSGEALAAYCGARREDCYWRPTPEQWEKIKAGATGPRVKE
                     AKSVLVADAQKPLRPAALTRGIKIKKSEPAPSVVRVNDSADSDVLVTRIELAHR"
BASE COUNT         3025 a         6203 c         6177 g         3177 t
ORIGIN      
        1 ctcctcgcgc ccgcgctggg actggccgcg gccgtcgcgc tgcacgccgg ctggaacgcc
       61 gccgccttct tcgcgataac ctacgagagc ggcgcctacg tcgtgctcac gtacctgctc
      121 gtgatggtgc cggtcttcgt ggggctgctc gccgtagtcg tcgcggcgct caggcgcgag
      181 gggcggctgc tgagagagca cctgcgctgc gacctcgagc gcggcctgct cgcgcgcgag
      241 gagtacgagc ggctctgctc gcttcggggc cgcgcgtccg cctcgctcgg cgcgctcgcg
      301 ggcggcgggg gaatcaaggc ttggcgggcg cgcacgcgtc ttaaccgcgc cgccagcgaa
      361 ctcgccttcc tgcgcagccg cgtcgcgcgc ggcctcgccc cggccggcgg cccgtgcgcc
      421 gagcgcgagg ccgagttcgt ccgacagatt caagggctcc agagggagct ggcggcgggc
      481 ggccgccgct agccggagcc gacgagcgtg aagataaaac tcctgccgag cacgattgac
      541 gcagagggcc gcgccacggc ggagcagcgc ctgagctgtt tcctggtgga cgaccgcgtg
      601 acgattgacg cgggcagcat cgccatcgcc ctcgacgact cgcagcggca gcgggtgcgc
      661 gacgtgataa tcacgcaccc gcacatggat cacatcgcca cgctccccat cttcgttgac
      721 gacctcttcg gcacgctctc ggagccggtg cgcgtccacg ccgccgaaga ggtctgccgc
      781 atgatcgagc gcaacgtgtt caacggcacc gtctatcctc ccttccacaa gttcagtaac
      841 tctcgcacgc gcgtcatgga gttcgtcccc ttccgcgcag gcgaggagtt ccgcgccgct
      901 cacctccgcg tcaaggcggt cgccgtcaac cacatcgtcc cgacctacgg gatgctgctc
      961 acggacggcg agaggacgat agcgttcagc tccgacacct ccgcgaccga ggagttctgg
     1021 cggctcgcta actccgcccc gcgcctcgac gccctgctca tagaggcttc gttcccgaac
     1081 tcgatgtcgg cgctcgccga gaagtcgggc cacctgacgc ccgcctccct cgcccgcgag
     1141 ctcggcaagc tcgagcacga ggggctagac attctcgccg tccacctcaa gccctccttc
     1201 cgcgcgcagc tcgtcgagga gctcgcgggc ctgggcgtcc cacgcctccg cgcgatggag
     1261 ccgggccgcg aatatagctg gtaaaaattt tcccggcgtg aaaaggcttc ggcccggcgg
     1321 agagtaaagg ctctccgccg ggccgaagtt tttaaggcgg gcgggcgccc cggccttact
     1381 ggccgaagcg ctgctcgtac tcgattgagg tgatgaacgc cttgaccatc tcggcgttga
     1441 tgaagttgcc ctggaactcg ttgagcttgc cgagccagaa gttgtagccg ccgaagcccg
     1501 tgtcgggcgc gtcgttcggg ttcctcctca ggtacccgaa gtactgcatc agcacgaacg
     1561 ccttgttgaa ctccgcctgc cgcagctgct cgtcctcggc caccgccctg agcacgtccg
     1621 cgcgcccctg cgccgtgttg ttggccgaaa gcgccgccac ctgctggtcg cgctcctcct
     1681 gcgagagcgc cccgcccgcg ttggcgttca gggcgtcgac gaactgcgcc ggggtcatcg
     1741 tgctcgggta tgcggccaag aactcgggcc tgccgacgaa ctccagcatg taggcgtcct
     1801 tgttggcctc gagcttctcg ggccagcccg gcgtgccgac tatcacgccc tcgcctatct
     1861 ggcgggtgtc ggcgaggaac tcccggaggc ggacggggac gggcgcgttc ggcaggttgc
     1921 cgaaggccgc cttgtaagtc cggtagacga ggtagcccgt ctcctggaac tctatcgaga
     1981 ggaagaaggc ggccgacacg tttatgcggc agacgagcag gtcggccggc ggcgggttcg
     2041 agcagttgct cagttggttc gtccagaagg cgagaccgcc cgcgtcggcg ttgcggttga
     2101 ggaagtcgcg gtagtgctgg cggacgaaga actcggcgtt gaagctcgcc gccttgacgg
     2161 ggctcgggcc gttgccgacg tcgttgctgt ctatggtgac ggtcgcgctg ctctgcgcgc
     2221 cgaggttggc gcccgtcggg ctggagagcg agactgtgaa ggtctcgtcc ggctcgtcga
     2281 aggcgtcgtc ggtgatgaag acgtcgaagg tcttcgaggt ctcgccggcg gcgaagcgca
     2341 ggcggccgta ggcggccgtg tagtcggagc ggtcgttggc cgtgccgttc gaggtggcgt
     2401 agttgacgac tgactcgccc gtggtcggcc ccgtgcgcgt gacagtgatg gtcacggtgt
     2461 tgggcgcgtc ctcgctggcc gggtagttcg cggcgctaaa ctgcacatcg gccacgggcg
     2521 gcgcgggctc cgtcagcgcc agcgtgtagt tgccggtcgg cgacgccggg tcggggtcgc
     2581 tctggctggg cccgaggggc agcgtgttgg cgagtatgta gtaagtcccg ttgctgggca
     2641 gcgtgaagaa gccggtcgtg gcggggatgc gcgagttggt gccgccgccg ccgtcgtcgt
     2701 tctgcgcgag gatcgccttg tcgggcccga gcaggtagag gaacgcgtcg aaggccgtcg
     2761 aggtcatcgt gacggcaatc tgctgccccg ccgtgcccgt gaaggtgtag gcgtcgaaga
     2821 gtgtctcgtc ggtcaaaagg cactcgccct gcgagagcgt gccgttgacg gtctggccta
     2881 cgtttatcgg cgtcgtcggg cattcgcccg cggcggccgt cacggtcagg gtgtagctgc
     2941 ccgtcggcga gggctgatcc tgcgtgccga ggttgttcgc ggctatcagg tacgtccccg
     3001 tgtagggcag cgtgatgaag ccggtgccgt cgggcagtcg ggagttgagt gtgccgccga
     3061 cgccgctgtc gtcgtcgtcc tcgcctagca cggtgaaggc cgggtcgagc aggtagaggt
     3121 aggcgtcgaa ggccgtcgag ttgagcgaga tggcgatgcg ctgccccgcg gtgccgttga
     3181 aggtgtagag gtcgtagaac gtctcgtcga ggagcttgca gtcgctcgtc gagagcgcgc
     3241 cgttgacggt ctggcccgcc gttatcgagc ccgcgctggc gcactggccc gcgcccgtga
     3301 gcgtgatcgt gtacgtgccg aaggtgtcgc cggggtcgaa ggcgttggcg agaatctcgt
     3361 aagtccccgt gtaggggagc gtcaccatcc ccgcgggcgg gatgcgcgag ttcgtcgtgc
     3421 tgccggagct gtcgtcgttc tcgttgagca cggtctcgcc gtcgtcggcg atgatgaaga
     3481 ggtaggtgtc gaactgcgtc gaggtcatcg tgacggctat ctggttgccg gccgtcccct
     3541 ggaacgtgta gctgtcgtaa accgtcccgt cgcccagggc gcaatcgtcc gtcgtgagtt
     3601 gcgcgttgat cgtctggccg acgtttatgg tgtttgcgac gcacgcacgg tcggcccgcg
     3661 gctgcgcggc tgcttcgccc gcggcggcgg ccttagcgcg cgaggcgcgc tccgagcggc
     3721 ggatgacgtt ctgcttcgcg tcggacttcg ggccggccag cgcctgcgga gtgcgcccgg
     3781 gcagggtctt gcgtgccttc tgcggggcgg ccgcgcgggc gcccgaggcg cctagccagc
     3841 cggcgccgcc gagcgtcgcg agcgccgcga gtgtcaggag cgtgagcgtc gccgcagggc
     3901 gcctgagcgc ggcggcgggg cgaagaatcc ttgcacgttt cactggggtc attcctttcg
     3961 agtgagcgag gcgcacgtcg gggagcggcg tctgtggagc gagccgctac ggctcgggta
     4021 agacgtaagt cagttcacgg tcggttgctt gttaaggttg atggcgggag agcggaggcg
     4081 acttcgctgg ccgccgccgg gccgtggaat tctgcgactg cgtaatagtg catgcgccag
     4141 ggcgctaagt caaatgcgca agttgtgagg aatcaagggc gagcgggcgc tcccggcccg
     4201 cccgtttcag cgcaccggct cgaactcggt ctcggtgtgc tcgcccgcga agccttcgag
     4261 ccggacgcgc ccgctcgcga gcacctcggc gacgcggaag gttcgctcct ggcggctccg
     4321 gccgggcata agctcggcgc ggaaggtggc gctcatgccg ggccgcgccc agcggtcggc
     4381 ggcgccgcgg ttgtactcgg ggtagatcga cttcctccct tcgcccggcg ccctctttat
     4441 acgcctcacc agcacgaccg cgcccaccgc gcccgcggcg agccccgccg cgcccgcgag
     4501 ccacccggcc caactccgcc ccctgccttt agtcacacgg ctcatcggaa gagccccacg
     4561 gaagacccgc gatacacgcg tgcgcgcgca aggccgagcc acttgcgcct gatgggctcg
     4621 gccttgcgcg cggaagagac tcggggtcgc gccgccctca gcagagcggc tccagtttct
     4681 cgctgatgat ggggaggccg ctcagagatt tctccgcgtt aatggctgtg tagtgcgccc
     4741 actcgtccgg caccttgtcc tcggcaaaga tggcttcgac ggggcattcg gggacacagg
     4801 cgtcgcagtc tatgcaggtc tcggggttaa tccagacggc gttgtcgtcg aggtgaaaag
     4861 cctcgacggg gcagacgacc acacagtcag tgtagcggca gttcacacac ggttcacaca
     4921 cgacatacgt cattcagatt ggcctcctca agatgtgtat gacggcggcg gcggcgggcg
     4981 cgcgactgcc cgctcacgtt cgggcgcggc ccgcgccggc aatccaggaa tgtcacttcg
     5041 ccggatatat taagcacgaa caggcgagtt ttgaaagggc aaaatgcagt tttcggttca
     5101 gcgctcccac tcgcggcgcg cgtcgttgcc tgggaagctg tagaaggcca ggtctgtacc
     5161 cgtgaggagc ttcgtgagga ggattatctg gcccgtgtgc atcgagaaat gctcgacgac
     5221 gtggaagacg gcgccgagca ccgtcacgtc taagccctgt atgcggcgcc cctcctgaag
     5281 ctccgcgggg ccgaggcgcg cgagcaccgc gtcaacctct tcgagcgtgg agcgcaagag
     5341 cgcgcgcagc tcttcgcgcg tcgcgccgcc gcgcgcggcg aactccgcgt cgcgcacgcg
     5401 gcggtcttcg cctcccccga cgccgcacac gacccactgg cgggcgttgc cggcgaggtg
     5461 aagcgtgagg ttgccgacgc tgttcgactg ctcgcccgcg cgccaccata tttgctcgtc
     5521 ggtcaggcgc tcgaggcagc gctcgatttt gggcaggtag tcgccgagca ggtagccgcg
     5581 cgcctccgcc aggaagttct ctgcgaccgc gtcccgcacg gcactactcc acgccctcgc
     5641 cgtcgccggg cggccgcttg tgcttggcct tgcgctccgc ggggtgcgcg cgctcctcgg
     5701 gctttgcacg cgcgatgggg tggcccggcg gcgcgacggg ctttcgcacc gatgcttgaa
     5761 gtgaacgccc gccgccagcg cgcgggcctt tctttgcgct gctcttcttc atcggcgaat
     5821 ctccggcgct tcaggagtgc tcaaggcgcg aatgtatgcc cgctcgccgc gcgtgtcaac
     5881 actttcggcg acggcgaaga gaaagcgcgc gacggcgcgg gcgggggcgt cgcttcttga
     5941 gagtcgccga ccgccgcgcc ctagtcaagt ggctcggagc ccttcaggcc cggctcaggc
     6001 ttacgcactg agtagctctt ctgacctgtc tcgtttgtcg cgtgtgtatg aggggaggga
     6061 gagccgcccg cctacgcctt gctggcctgc ggggtgccgt cggcgaacag ggtcttgatg
     6121 gcgcgcgcgg tctccgtgcg gcgcttctgc tggaactcgt tgacccactg cgtgacggtc
     6181 gcgaccatgt cgcgagcagt ctcctgcgcc gacttgcgct ccgccgccac gtcctgcgtg
     6241 gcctgcttct gctggcgagc cctctcgtct cgcttgataa cctttatcgg ggttttcttc
     6301 ttcataacct tttgtccgtt gtgcgcgttg cgcgtgtgct ctcttaagac gaacagcgcg
     6361 ggtgaaaagt tccggtttgt tcggttcccg tctgccgcct ccggctggcg cgaggaagaa
     6421 gagcaaaccg aaggccacaa cttcccgcgc ggcgtggcaa gacgaccgct aaccgcggcc
     6481 gtgaagacat cgcaataaaa ctttgacatc tgaggccgtc gaggccgccc gctgacgagg
     6541 ttttcgcgga aaggtacttc gagagctatg tcagagatgc gcggcgagcc cgtcatgttg
     6601 cctgaacact ttcggtcagg ccgcatccag tttggtgtat gtcacgcaac atgcacgggc
     6661 acaccgccgc gcgcgtggcc tcattacgta caggcgccgt cgcggccgcg ctgcttttgc
     6721 agattgccaa gctcacccgt tggccgcgct ctttgccaaa gaccggcgcc cgccccctcg
     6781 aaggccgctt cccctcccga cgctacgcgt cccgcgtaat cggcggattt gtcgagcact
     6841 cttgaacgcc cgacggccgc ccgtcttgcg cccgcgcgct ggcatgaccg ttgcccttcc
     6901 cacggtcgcc atgcgcctga gcgagctgac aatcctttac cttgctgcgg cggcgccctt
     6961 cggcgtcgcg cactacgcct cgcggcgcgg gggcggtggg ctccacgcac gcgcgctgtt
     7021 gaagtccaca gccgccgcgc tcgcctggcc cgttatggtt acactgctcc tgctcaggcg
     7081 ctcgcgcgag gcggaaagcg gcggcgcgca cgacgccgct caggcgcccg acgagcgcag
     7141 ggtcgagggc gcgaagcgcg cgacggtgaa cgcgcttcgc aaggtcgaag acgtttgcga
     7201 ggaggcgggc gcgtcggagg gcgaggccga gcggcacgcc ttcttcgccg cccgcgagtg
     7261 cgtcgagcgc tacactggtc tggcgctcgc ctgcgctgcg tcgagttccg acgcaggccc
     7321 ctcgcatcgc gagatggagc tgtgccgcat agcgggccgc gcgggcgacg accttctggt
     7381 ggcgggccgc tgcgcgcacc ggcggaacgt cacgcggctg gtagcgcacc gcgagcgggc
     7441 gcgctcggag ttggttcacg cactagcggg cgtgcgcgag ctgacgttcg cgctcgaagg
     7501 agcggcggcg ggccgcgcgt cggaagcctt gctcggcgcg ctcgcgcgcg cgattgagct
     7561 gctttcgctc ttcgacgacc gcgagaccgt cgtcagggcg gcgcggctct tggacgccga
     7621 gtgcgcgcgc ttgcggcggc tgggaggaga ggcgggcgcg tttgaggcgg cccccctcgc
     7681 gggccggcag gaaggaggcg tgggatgtac gacacaggcg gaagccacag cgtttgcgac
     7741 aacgctccgg cgtactacga cgcgcgcgag cgcgtcaact ggctgaaggg cgagctggcg
     7801 cgcgacgagc gcagggccgc gctcgcgcgc aacggcgacg acgaggcggc agcgcagctc
     7861 atgctcaagc ctgtcgcgac cgaggacgcc taccgctggt tcggcacctt cctcgggctc
     7921 ttcccgcccg cggccatctt cgggcgcata ttccaggccc cattcgcgcg tggcgactac
     7981 gcgtggcttg gcttcctttg cctgctcgcg ctggccctgt gctgctcggt cgggcgctcg
     8041 gtcggcgggc ggctggggca gaaggtcgat aaccctcgcg cgcgcacggc ggtgatgacg
     8101 ctgctggcgg cgctgccggt cgcaatcgcg tggggcgtca tcacgggcgg gacgggcggc
     8161 ctcgtcttct tcggcatagg cgcgctcgtc ggccccttct tcgcgattcc ggtggcgctc
     8221 gcgggcttcc tcgccttcat gcagcttcac cggctgctct cgcgcggtgg tatgattgag
     8281 gagcgccacc tgttcccgct gacgttcggc cttccgtgcg tgattgccgc cgcgatcctg
     8341 gggatgtaag aaagcgtagg cagaaggcgg aaagcagaag gcagacataa ctcatccgtt
     8401 gcgcctgcct tccgctttcc gccttctgcc ttcttcttat gctgctagcg ctgctcctcc
     8461 tttcgctctt cacgctggtg ctgctgggct tctacgtctt cgtggcggcg ccgcgcagcc
     8521 gcgcccacca gactttcgcg gccttcatcg cgtgcctggc gctctggact gtcaacgaca
     8581 tcgtgatgtg gggcttcggc ggcggcgagg cgctcgcgcg ctggtgggcg agcacgagct
     8641 tcgtgctcag cctgctcctg cagttctcgc tcgtcgtctt cgcgtgggtc ttccccgagg
     8701 gcgggggcgt gccggcgcgc cgtgcggccg tcctcttcgc gcccggcgcg gtgctggtgc
     8761 cggccgcgct cgccggcatg atgtgggacg agatcagctt cgacggcgcg gccttcagga
     8821 taaggctgac tccgctcgct tacgccttcg gcctctatat ctacgggctg ttcgcatacg
     8881 gcttcgcgct gctctaccgt aaatacaggc gctaccgcgg cgggctctgg gggcagcagc
     8941 tcggcgcaat cctctgggcg ctcgtcatca cggcgaccct gaagacggtc gcgaacatcg
     9001 cgctcccgct cgccggcgtt tacacgctgc tgccggtcgg ttccgtcttc gtgctcgtcg
     9061 gcgtcatcat ctacgcctac gccatcacga acttcaagct cttctcccta cagtcggcgc
     9121 tcgaccagtt ccgcctcttc cccatcgcct acaaggtcgc gctctccatc gcggcggtcg
     9181 ccgtcctgag tttcgcgctc ttccaaatcc ccatcgtctg gtggagcttc gcggggcaga
     9241 cggccgaggc gtggaagcga tacctcgtct tcagcgtcgt gacggccctc gtgccgaacc
     9301 tcgtcctcgt cgcgctcgtc atacgcatca tctcgcggcc gctccgcagg ctcaccgagg
     9361 ccgccgtgga cgttgccggc tgtgggtacg gcacgcaggt cgagcttaag agcaacgacg
     9421 aggtcggcct cctcgccgcg tccttcaacg agatgagccg caagatggcc gaggacatcg
     9481 agcgtctgcg cgccttaaac gagcagctca tacgcacgga gaagctcgcg gccgccggca
     9541 cgctcgccgc gggcgtcgcc cacgaggtca acaaccctct ggcctccatc tcgtcgctca
     9601 tacagatttt gcagacgcgg cccctcacgc ccgagaacga ggcagagacg cgagagatgc
     9661 tgcggctcgc gcagacgcag atagcgcgca tcacgcaggt cttgcgcgac atgatggact
     9721 ttgcgcgcca gcgcccgccc gcgcgagccc cgctcgacct ttcgcgcacg gtcgaggcga
     9781 gcctgcgcct cgcgagcttc gacaaggctt tcaagcggct gcgcgtctcg gccgagttcg
     9841 acccgcgcgc cccgctcgtc gcggccgacg cagggcagat gcagcaggtc tttttaaacc
     9901 tcctcttgaa cgcgcgcgac gccacgcccg acgggggcga cctccgcgtg aaaacgttct
     9961 atgatgaggc ggccggcgag gtcgtggccg agatagagga cacgggccac ggcgtcgcgc
    10021 ccgaagacat ggcgcacatc ttcgacccgt tcttcacgac gaaggggacg gccggcgcgg
    10081 ggctcgggct cgccgtctgc tacggcatcg taacggcgca cggcggccgc atagaggtcg
    10141 ggcccgccgc gggcggaggc accgtcgcgc gcgtggcgct ccccgtccgc gagcgcgccg
    10201 acggcggagg cgccgcgaac caactcacag gatgacgacc cgatgaccac gacgacgccg
    10261 ctgatactca tcgcagagga cgaagacctg atgcgcgcga tcatctcgcg cctgctgggg
    10321 gaggccggct accgcgtcgc ggccgtggcg agcgccgagg aagcgctcga agtcttcgct
    10381 gccgaggacg tggccgtcac gctcaccgac atacgcatgg ccgggatgga cgggctcgcc
    10441 ctgctcgacc gcgtcaaggc gattgacccc gaagcgctcg tgatagtgat gacggcctac
    10501 tcttcggttg actcggccgt ggcggcgctc cgaaagggcg cctacgacta cgtcaccaag
    10561 cccttcgtca acgaagacct cctccagtcc gtcaagaacg ccatacgcca gcgcgagttg
    10621 ttccgcgaga accggctgct gcggcgcgag ctcgacagcc gatacagctt ctccgagata
    10681 gtcggcacct cggaggcgtt gcagcaggtc ttccgcctcg tcgagaaggt cgcggcgacg
    10741 agcacgaaca ttctcatcta cggcgagtcc ggcacgggca aggagctgat agcccgcgcc
    10801 atacaccaca acagcccccg gtcggggcgc cccttcgtcg ccgtcaactg cggggcgctc
    10861 ccggagtcgc tcctggagag cgagctgttc ggccacacga agggcgcctt cacgggcgcg
    10921 gccgcggcgc gcgccggcct cttccgctcc gcggagggcg gcacggtctt cctcgacgag
    10981 ataggcgaga taagccccgc gatgcaggtg cgcctgctcc gcgccgtgca ggagcacgag
    11041 gtcacccccg tcgggtcgtc ggcgcccgtg cagttcgacg cgcgcatcat ctgcgccacc
    11101 aaccgagacc tcgagcgcga agtcacagag gggcgcttcc gtgaagacct cttctaccgc
    11161 ctgaacgtca tagaggttca cctgccgccc ctccgggagc ggcgcgagga cataccgctc
    11221 ctagtccgcc acttcgtcac gcgcacggcc cgcgagcagc agcaggtcga aaagcccgtc
    11281 gagcccgcgg ccatgacggc gctcatcaac tacaactggc ccggcaacgt ccgcgagcta
    11341 cagaacgccg tcgagcgcgc cttcaccctg agcggcgagc gcctcgacct cgaaagcctc
    11401 ccgccgcgcg tgcgcgacgc cgccgcgaag gccggccccg agagcgtccg cgaccccgac
    11461 ggcctccgcc ccacgctcgc cgagatagag cgccgccaca tcctcgacac cctcgccgcc
    11521 gtcaaccagg acaaggcccg cgccgccaac atcctcggca tagacctctc caccctctac
    11581 cgcaagctca agcgctacga cgccgtgtga gctgggccga aagagagact tattagctcc
    11641 ggcagtcgct ccggtctgag ttattcctac ctcgccctaa aaaggggagc cccgcggcat
    11701 atacatattc gacccggggc gactacgcgc gaagatttcc ttgccgccgg gtcggtggat
    11761 tgggcatgat aggggcgtcg ccagggcggc cccttcgtct tctcatgcct cgtggcggag
    11821 gtagaacgca ccattcggct tttgccacct tattacctag tcagaccgca tcagtcggtc
    11881 taatacatcc acggagggga gaaaatcaac gcgagcgcgt ttaaggcgct cgttaaggcc
    11941 gctgtggcac agaatgggcc gacggcgaag aaacggtaga ctacgcatcg acaaatcctt
    12001 tatcgagaga ggcccgagat gacgaagaac gcgcgcgccc tggctgcttc actaaatcgc
    12061 gagattgtcg acgatcaacc cgatcggctc agcattcaca cacaccgcat tcgtctgacc
    12121 caggcgaatc tgccctatca gcccgtggac ggcaaacgac tgccatcgga aaagcatttt
    12181 gcggtttatg ccgaccagat cgttctagag ggcgtgctgc agaaccccgg ccgcaacatc
    12241 gagttgcacg cccgcgaaat tatcatcgac aaaccggcga cgctggatgt cgctggcgcc
    12301 tacgccgaga aggatttcaa gcccggggac gtaccgacgc agaaggacgc caaacccggc
    12361 gccgacggca ccgacggcga gaacgccaca ccgggcggca acgccggcag tatcgtcatc
    12421 gacgcgcatc acctcgtgaa caagacgtcg ggccctcgaa cgcagaccgt cgccgaactg
    12481 aacgccgtcg gctcgcagat tcttgccgaa cacccgctga agatcgacga caccgccacg
    12541 ctgccggcga tcgaaatcgg ccggaaaaag atctatgaca actacgaggt ggtcatcacg
    12601 ctcgagaacg gtcgcgtcga aggcctcagc catctcacgc tcgaatccgc gcgggccgac
    12661 agaaccatca accggatcgc actgcgactc acgctctccg ggttgacggt cacgggcacc
    12721 acccaattca cggggaaccg gcgcctcgcg acgcaggcgt tcgcatgcaa gatcgacgcg
    12781 agcgcgactc tcaagaccga tggctcagtc agcgatctgc gcagcgatct gtcgttcgtg
    12841 tctgacactc ccatcaagct ggacatgcag aaccccgacg gcacgctgca ggcgggcgcg
    12901 ctgaatacga tccgcgaccg gatcaccgcg cacatcggca gcggcggtat cgaaacgctc
    12961 gtgaaagcgt tcggcagccg gctgggcggc tcggcgctga ccctgctcgc cggcggcggg
    13021 cgcggcgggc gtggacagga cgggcacgca ggcaatcgtg gcgaagccgg gccggacggg
    13081 gccaagacct cgaagcacgg ggtggaaacc gacggcggct acgggttccc tgaagaagcg
    13141 ataggcaaga acggatcaca gggcgggcgc gccggctctc ccgggctgtc cgccgacggc
    13201 ggaaaaggcg gaaggatcgc gctgaacgtg atgctgcccc tcgaactctc cgcggtttac
    13261 ggcatctccg gcggcgacgg cggcgtgcaa gccagtcccg gcgagcgggg ccctggaggg
    13321 cccggcggga ccggagcggt ctgccatatg tataacgcca agaccggccg gcccatcgac
    13381 gacatgcaag ctcctgacgg caaagaaggc ccattgggcg atgttgccaa gagcaccggc
    13441 agtaaaggat ctccaggcgc gagcggagag ccgctgaagt tcaacggcgc gccgtacacc
    13501 ggcgggaccg tgcccgcgtg cacgttcgcg gggctcgccc aagcgctaag cctgagtcag
    13561 ttgctcatta cccagaacgc caccgatcag gacttcctca acgcgaagaa agaggaggaa
    13621 ctggtcgcgg tggccgacgg ctatacctgg ctaatcaaca tcaaccagcc cttcaccgat
    13681 tccacgatca cgatcgacac cgcgcgggtc tcgaagccgg agcagcaggt gcgcgcgcgc
    13741 attcacaaca gcgcagtggt gtcgttgatg cgcctccaac aggggctcga ttactacggg
    13801 cacagctaca actggacgcc ggtgttgaac ctcaccaatc tgcttgccag gaccagcgag
    13861 atcatccagc tcggcaaggt ggtcgaagac cagttcaacc gctacctgga caagaagctg
    13921 accgacaagg aacgcatgaa ggctttcggt caggccaagg aggaaatcga ttccaagctc
    13981 gccaagttcg tcgccgagat cgaaaagctg aagccgcaga tcgagagtct ctggaccgaa
    14041 gtcgaaaagc actccgaagc gatgcgccga cagcggacgc tgctgctgga aggggaactg
    14101 aagttcaagg acgaactgat taagtatctg cgcgagcaga acgatctcac cttcgaggcg
    14161 tttctcgaca ttctgggcac agtgatcggg tgtgccggcg gtgtcgtgga gggcattgga
    14221 ggcatcaaga ccgccatcaa cgcgctgaag aaggccgagg aattcagcaa gcaggtcaag
    14281 ggcgtcgtcg aaatcttcaa gaaggccaag gccaccatcg acaacatcag caaggcgtac
    14341 tcatcggtca aagatgcttt cgacgacggc aacccgaacg ccgccaagat cctggttgaa
    14401 ggcgaagagt tcgacaagat gctgaaggag tatctgggta agttcgacgc cgccggcgag
    14461 ctgcgcaagg ccatggacta ctacctgacg ctggcgcagg cgcgcaacat ggccgcgtac
    14521 aactacacca cgctggtcgc gcagatgctg accattcagg cgcaacacga tcagatgtat
    14581 cagggcatcc agcacatcaa cgccgaaatc gccgcttatc aggacaacgt gctgccaatc
    14641 tacaccgcct atctgaagga cgcgtacgaa gacgtccagc gcaacctgct gcggaacatc
    14701 tatcaggaga accgggccta ccagtactgg tcgctcaaga accggcagtt gaagaccgat
    14761 gacctgaaca tcgccacgct gaccaaaacg cacgcagacc tgatctcgga catcgacggt
    14821 taccgcgagg agagcgattc gtactccccg ttcaatcaga aggtgatcat ttccgcggaa
    14881 cggtatccga acgaatttgc cgccatgcgc gagtcgcgcg tattgacctt cgagctggat
    14941 attcaacagg agccgggatt ccaaaacatg cgctacatta tcgcacgcaa gttcaagctg
    15001 gaattcccgg aggtggcggg cggcaagcac gtactgtttc tcaatctggt tcacagcgga
    15061 gaggcggtgc tgaacagcga cacgaacctg gacaagccgg gcgccctgca cgtcttcagt
    15121 caccggccgc gtgtggcacc ttacaagatc gactacgagc atccggagaa caccgccggc
    15181 ggcaatctcg gcgaggacag tcagggctac atcggcctca gcccgttcac cttgtggcga
    15241 ctcgatttca atcccaaggg taacgaatgg ctcgatctca gtaccctcaa gaccgtggtg
    15301 ctgaccttct cgggccggat gctggggccc aaggcgcgat tgccctgagt cacagaggag
    15361 ggcgctcctt cgcttgagcg cgtttggcgc gccgaagctc gatgagggaa ggcgggcccg
    15421 gcgcgcggcc cgtcattgcc ggagggcatc gctcgaaagc caataagact ttaaaaacgt
    15481 aaagccgcgg ggctcgccgt ctgacgagcc ccgcggcttt acccgatgat ggttctctcg
    15541 cgctagtctt tcttgccgcc gaacatgccg ccgaggccgc cgagcacgtc gccggccttg
    15601 tcggccacgc cgccgacggc cccgcccgct ccgccgagga agccttcgag ctggccgcct
    15661 atcggctcgg gcaggcggtt cttgaggaag cccatgacgg tctcgaccgc cgagcgggcc
    15721 tgggcctcgc ttatgccggc gcgctccgta acctgtctga ttagctcgtc catgaatgac
    15781 cctcctgtga ttgaggcggc gtcgccttca gatgaagacg acggtctgga agttcgggat
    15841 gtcgaagcgc cggcggcagc gcgcgcaggt cagcgtgtcg tcaacgcgca ccatgtagtc
    15901 gcgcgccttc gagaactgag ccttctgctg ctcgttcatg ccgcgggggg gttgcgcctt
    15961 cttcgtgcgg cgcagccagc gcacgtcgta gtcggcgcgc tcgcggcagt gagggcacga
    16021 gtagctcgcc cgcttcgtct cctgccgctc gtcgaaaaag tctctctcgt tcataagaaa
    16081 accggcatct cactttaagc cgacgcccgg cgccggtggc gtatgacaat caggagcccg
    16141 agcagcccgt tgacgagcat gagcgagttg gtgacgacga agacccagtt gttcaccagc
    16201 cagctataaa ctgtgaaccc gagcgaggcc gaaatctggc cgacgaagag ccacttcgag
    16261 acgccctcgc tcctgccctc ctgccactgc ttatagacct gcttggcgat ggtcagcacg
    16321 agtatgaatg agctggccca gccgacggct tctaccaaga ctctatcgcc cccttgcccg
    16381 gactgctgtt taatgccgcg ccgtcattat cggctaaaac ccgcctcacg acaaaagcct
    16441 gcgcaccgtc tcgatgagcg acacggggtt gacgggcttg ggctcgtagg cgtccgcccc
    16501 ctgcgcgagc gtgatgctcg cgctgccggt gccgaagccg gtggtcacga ttatcggcgt
    16561 gctctcgagc cccggcgtgt cgcgcacgcg cctgacgagg tgtatgccgt cggccgcggg
    16621 catccatacg tccgtcacta tcaggtcggg ccgcgcggcc acggccatct cgtagccgcg
    16681 cacgccgtcc tcggccgaca gaacctcgta gccctgcctc acgagcgaca tgcgcatcag
    16741 ctcgcgcgcc acttcgtcgt cctcgaccac gagaatcttc ttcatatgaa cggccggggg
    16801 ggcggcaggg ccttcaggcc gcgccttctt cgcccgcctc gcacacttcg cgcaggtagc
    16861 ggaagctgta tatccccgtg tcgtgaccgt cgctccagcg gaagttaagc gcgtagcgcc
    16921 cgactatgtc aacgtcctct atcttcaggt cttcggggac tgactcggcc ttgagcaccc
    16981 gctcgcctgt gaactcgttg acgcactgcg cgcacgggca gagcctgcgc agttgcggcg
    17041 cgccgtagcg gcacacgcgc ccgtcggccc acgtgacgcg aagcccggcg tcggactcct
    17101 gcattatctc gcgcggctcg accgccgggc cgcgcctcgg ggcgtagtcg ctcatcgccg
    17161 cggcctactg gttctctttc atggcccgct cgacggcgtc ggccgtgatg ttaaagtgcg
    17221 acgcagtcca ggccgcctgc ccgttgcgaa ggacgagcgc ctgcggcgtc tcgtgccgga
    17281 cgcccgtgcg cgactcgacc tcgcgcgaca gttcgcggct ctcctgcacg acgatcaagg
    17341 aaacgtcgtc cttgaactgc ttcatttgcc tgtaagcggc ggcgcttatg gggcaggcgt
    17401 tgctatgctt gaagacaagc acgggcgctt cgtgcgagcg ggcgaaaagc tcttcgagcg
    17461 cgcccgagtc ggcgacccgc ttgaaatccg tctccatcga ggccactccc gttctcggaa
    17521 aatttattag ctctaggcgc gatattagcc cgcgcggcgg cgctaaagca aaagcgcgca
    17581 cgcccgcctc acctgtgcgc gagctctatg cgcgtgacga gcacgtccga gtcggccgag
    17641 tcgttcacgc gaacgaccga gggcgcgggc tcgctcttct ttatcttgat gccgcgcgtg
    17701 agggccgcgg gccgcaaggg cttctgcgcg tcggcgacga ggacgctctt ggcctccttg
    17761 acgcgcgggc ccgtggcgcc cgcctttatc ttctcccact gctcaggcgt cgggcgccag
    17821 tagcagtcct cgcgccgcgc gccgcagtag gccgcgagcg cctcgcccga ggggacgcct
    17881 tcgagcggcc gccgcgagac gacgatgtag aggtgctcgg tggcggggcg gtcgtcgaac
    17941 tcgaaggagt agttaacgtc ggcagggtag gtgacgcgct cgtgcgcgct gacgcggttc
    18001 gagccgccgt cgagcagcac gtgtgggaag agcatgacgg ggtcgcggcc gtcctccgcg
    18061 ttgaagacgt agaggtagcc gtccgtgttc gtttcgagcg cgatggcgat tgcgtcgcca
    18121 gacttgaact gccgcgtggg ctcggcgacc gacaggccgc ccagccggtc tttcatgtat
    18181 atcgtatagc cgagcccgac gggccgcgcc ccgcctgcgc ccgacgacgc agggccgccc
    18241 gcctgctgaa taatggacgg ccccgcggcc gtttgactgc cggatgttga cgactggccc
    18301 gcgccggcct tcttcgtctt cgcggaggca gtgcccgcct tccctgcgcc cgtctgcttc
    18361 tgggggcgcg gggtcgggcg cggcgtcggg cgcggcttgg gcttctcggc cgccgtgctc
    18421 gccgccggct cgtcgaagct aacgccgcgc gagccgacga agtcttcgac caccttctgt
    18481 tcgtcctgtc cctgttggcg cgccgtcgcg ctcgcgccgc agacgagagc gagcagggcg
    18541 gcggccgcca aaaattttaa gcacatttga ctgttcctca tg
//
LOCUS       DASPKR010000133         7151 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_146049, whole genome shotgun sequence.
ACCESSION   DASPKR010000133 DASPKR010000000
VERSION     DASPKR010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7151)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7151
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146049"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..366)
                     /locus_tag="VD968_03825"
     CDS             complement(<1..366)
                     /locus_tag="VD968_03825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13554.1"
                     /translation="MKTASNHPSRTNRQQSVSIAAVLFFLVVAAFAFIPARPAEGAKE
                     SPAPRAERPAAGVHGELEDEGPASQQKEDKPPAPSDGCVKCHTGVEDPHVTKLRNGPS
                     CVDCHGGNGTATTKETAHTA"
     gene            complement(394..2262)
                     /locus_tag="VD968_03830"
     CDS             complement(394..2262)
                     /locus_tag="VD968_03830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13555.1"
                     /translation="MERLPKGRGPRRTRARAALLLALLLPLQQAAPAAAAFDHEGDAD
                     VPPSREEHYDALVASLAEFFFGARAPQTPQATPTPSPTPTPAQQPEGKGDATGPAKDE
                     TSKPLQYPLPDWQPLGNAGPKTVSPVDPASEEFIPMPDRWRFPWPRYDRYDPKKGTPW
                     VTGGTFDPFNQNVAKADYPIFGNHTFLNLNLQSASTLNPRTVAVGGRRDQFFTNQNVV
                     MGAEIFKGDTVFEPKRWAVRVTTVANFNFLANNTLNPFDSRRGNSRLAVEEAFFEKRL
                     KVVSPNFDFISVRAGMQNFTSDFRGFLFSENQLGVRFFGNLNANRDQYNLAFFSMRQR
                     DETSQLHSFDRRRQHVFIFNWFHQDFITKGYTALFSFHQNTDRGRVTGDRAALDVSYL
                     GFHGDGKWGRLNVSHAFYQALGRDRRNRLTGSRESINAQMAAFEGSIDRDWARWRGSF
                     FFASGDGDITDGSARGFDMIQDNPNFAGGPFQFWSQQATAVGGGLGLLKNKFSLLPNL
                     RNKFNDRANFVNPGLLLWNFGGDFRVTPKMKVITNLSYLRFARPNSLRQLTGDSGIDG
                     GIGTDLSAGVKFRPFLNENLFIVAGGAVLFPHGGYARMIGSTRPLFSPTFAFQVAF"
     gene            complement(2503..3297)
                     /locus_tag="VD968_03835"
     CDS             complement(2503..3297)
                     /locus_tag="VD968_03835"
                     /inference="COORDINATES: protein motif:HMM:NF021371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2071 domain-containing protein"
                     /protein_id="HYE13556.1"
                     /translation="MSARYVDRLTIRRRPAGLPLMRQWWGKLLFMHWPVAPSLLRQLI
                     PPQLSIDTHEGQAWVGIVPFTMWGVRPYFAPPMPGLSSFHELNVRTYVHFDGVPGVLF
                     LSLDITSTVATWAARQFFFLPYHNAEISLRQSGQTIDYSSRRVQQGAPAASFDARWKI
                     GERLPQSEPDSLAFFLTERYCLYTAYDEQLYRARIFHQPWPLCSAEVSSYESSMVEAL
                     GLPTPTGEPLLHYAEELKVDIWPLMRVRKGTQSHLFEPANASEIFG"
     gene            3430..4221
                     /locus_tag="VD968_03840"
     CDS             3430..4221
                     /locus_tag="VD968_03840"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: protein motif:HMM:NF013670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HYE13557.1"
                     /translation="MKPKRLTPTALLLLALCAAAFAQAGKDNPKTSKPAEKVSRAKGA
                     TEHAAPVVCIDPGHPSEVASGRNEQNGTNETRVAWSVALKLRESLLARGYEVVMTKSA
                     EGELVRNKDRALVANRARAALMVRLHCDASVERGFAIYYPDRPGRAKDGSTGPGSPVV
                     EASRRAARAVHSGMAELLAGSLNDNGIRTDYQTKVGREQGGALTGSIFSEVPVVTIEM
                     VVLSDPQDAEFIKSEEGQRRMAEAIAEGVGRFVGPAHASSPRRQD"
     gene            4253..5422
                     /locus_tag="VD968_03845"
     CDS             4253..5422
                     /locus_tag="VD968_03845"
                     /inference="COORDINATES: protein motif:HMM:NF024704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YARHG domain-containing protein"
                     /protein_id="HYE13558.1"
                     /translation="MSDPYAKLKRAAAALALLLAAHALALAAQEEAFDRLSKLDFSKE
                     RVERLDLKDLSLWELQRLRGIIFGRHGRVFKDRDIQDYLKEQEWYEPRTGFQNSMLNE
                     TERANLDLIREMEAAKHDFIEPGDMRWWQTRIIGTDELGTHTAAEWRILRAEVEAVHG
                     KRFDDQPWLQQYFEDRYWYKPDPNYDAKRLSEKERRNIATIDAAMRKQRGGVSLSPGD
                     LEHFENREITEAMLAGLSLHELRLLRNEIYARRGRQFKTEWLSQYFWSQPWYQPREDA
                     SEPELSPVEKKNVETIVAYERRVKDDLSRKPLPKGLLEGMFLEDARKLRQEIYARHGK
                     VFKDRWLQKYFQSFDWYKANPRYSDAVLSAVERQNIAAIAAYEKKATSVLDAVEG"
     gene            5580..>7151
                     /locus_tag="VD968_03850"
     CDS             5580..>7151
                     /locus_tag="VD968_03850"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HYE13559.1"
                     /translation="MICPQCQLPLREGALFCTRCGTRTEHGRASGAGPAQADPERTAE
                     AGAHRVGVTEIEGDADALLGRVLDGKYEITGRLGAGGMGAVYRARRVHIGDEVAVKVL
                     HTRFVGDETLLERFRREARAAAQLHHPNVVTIHDYGEASGPQGFAYIVMELVAGLSLR
                     ELLSREGRLGVPRAVSLMRDVCAGVAAAHRREIVHRDIKPDNIIVLPPDDDHDSERVK
                     VVDFGIAKLRDMASDSTLTQAGAVVGTPFYMSPEQCRGEPLDARADVYSLGALLYEML
                     AGSPPFTAPSVTGVIAKHLTEPLPPLPRDLRAPPALEAAVTRALSKDREGRQRDAAEF
                     AREIQSASSSTARPFAGAEGFLPTGSTPSQVVPVPVPRPAQPAPQAPPPRPQITTPPP
                     PRPRSWLKIALALFVGALLVSGAVVAAWLTMPGAQSNRRVAVNARPSPVQVKTPPQRR
                     TPTPTPTPTPEAPAPAAAEALREEVGATIEDWAEATSERDIDAHMAFYADTLETFYTK
                     SGVPAAEVRAARERAF"
BASE COUNT         1257 a         2327 c         2458 g         1109 t
ORIGIN      
        1 tgcggtgtgc gccgtctctt tcgtcgtcgc cgtgccgttg ccgccgtggc agtcaacgca
       61 cgacgggccg ttgcgcagct tcgtcacgtg cgggtcttcg acgcccgtgt ggcacttcac
      121 gcagccgtcc gaaggcgcgg gcggcttgtc ctccttctgc tgagaggcag gcccttcgtc
      181 ctcgagttcg ccgtgcacgc ccgccgcggg gcgctccgcc cgtggcgcgg gcgactcctt
      241 cgcgccctcg gccggccgcg ccgggatgaa ggcgaaggcc gctacgacaa ggaagaagag
      301 aaccgcggcg atgctgaccg actgctgccg gttagtgcgg gagggatgat tgctggcggt
      361 cttcatgtcc taaagtttcc gtgtaggccc ggctcagaaa gcgacctgga atgcgaaggt
      421 gggcgagaat agcgggcgcg tgctgcctat catgcgcgcg tagccgccgt gcgggaagag
      481 caccgcgccg cccgccacga tgaagaggtt ctcgtttaag aacggccgga acttaactcc
      541 cgcgctcagg tcggtgccga tacccccgtc tattcctgag tcgcccgtta actgcctcaa
      601 agagttcggc cgcgcgaagc gcaggtacga caggttcgtt atcaccttca tcttcggcgt
      661 cacgcggaag tcgccgccga agttccagag cagcagcccc gggttgacga agttggcgcg
      721 gtcgttgaac ttgttccgca ggttcggcaa gaggctgaac ttgttcttga gaagccccag
      781 cccgcccccg acggccgtgg cctgctgcga ccagaactgg aacgggccgc ccgcgaagtt
      841 cgggttgtcc tgaatcatgt cgaagccgcg cgccgagccg tccgtgatgt cgccgtcgcc
      901 cgaggcgaag aagaaagagc cgcgccagcg agcccagtcg cggtcaatcg agccctcgaa
      961 ggccgccatc tgcgcgttga tgctctcgcg gctgcccgtc aggcggttgc gcctgtcgcg
     1021 gccgagcgcc tgatagaagg cgtggctcac gttcagcctc ccccacttgc cgtcgccgtg
     1081 gaagccgagg taggacacgt cgagcgcggc gcggtcgccg gtcacgcggc cgcgatccgt
     1141 gttctggtgg aagctgaaga gagcggtgta tcccttcgtg atgaagtcct gatggaacca
     1201 gttgaagatg aagacgtgct ggcggcggcg gtcgaagctg tggagctgag aggtctcgtc
     1261 gcgctggcgc atcgagaaga aggcgaggtt gtactggtcg cggttcgcgt tcaggttgcc
     1321 gaagaagcgc acgccgagct ggttctcgga gaagaggaaa ccgcggaagt cgctcgtgaa
     1381 gttctgcatc ccggcgcgca ccgagatgaa gtcgaagttg gggcttacga ccttcaggcg
     1441 cttctcgaag aaagcctcct cgacggcgag gcgcgagttg ccgcggcgcg agtcgaaggg
     1501 gttaagggtg ttgttggcga ggaagttgaa gttggcgaca gtggtcacgc gcacggccca
     1561 gcgcttcggc tcgaacaccg tgtcgccctt gaaaatctcc gcccccatga cgacgttctg
     1621 gttagtgaag aactggtcgc ggcgcccgcc gacggcgacg gtgcgggggt tgagcgtgct
     1681 cgcgctctgg aggtttaagt tcaggaaggt gtggttgccg aagatggggt agtcggcctt
     1741 cgcgacgttc tggttgaagg ggtcgaaggt gccgcccgtc acccacggcg tccccttctt
     1801 cgggtcgtag cggtcgtagc gcggccaggg gaagcgccag cggtcgggca tcggtatgaa
     1861 ctcttccgac gcggggtcaa cgggcgagac ggttttgggg ccggcgttcc cgagcggctg
     1921 ccagtccggc aacgggtact gcaaaggctt cgacgtctcg tccttcgccg gccctgtcgc
     1981 gtcgccctta ccctcgggct gctgcgcggg cgtgggcgtc gggctcggtg tgggagtcgc
     2041 ctgcggcgtc tgcggcgcgc gggcgccgaa gaagaattcg gcgagcgacg cgacgagcgc
     2101 gtcgtagtgc tcctcgcgcg agggcggcac gtcggcgtcg ccttcgtggt cgaaggcggc
     2161 tgccgcgggc gcggcctgct gaagcggaag gagcagggcc agtagcagcg cggctcgcgc
     2221 gcgcgtgcgg cgcggccccc ggccttttgg caagcgttcc atcgtcggct gtccccgtcg
     2281 agatgctgtg cgggctttag cgtcggcggc gcggccgcac gctcacaaaa aaaggccgcc
     2341 ggcccggtgc ggcgcccgaa gttaaactgc gtgagggttg tccttgataa agaaagagct
     2401 agcgaaaaga gccttgcgag ggcttcggcc tgtcagttgt ttacgagtgc ggctacaaaa
     2461 taggtcagcc gccgaaacga gtcaagaatt ttttaatccg gctcagccga aaatctcgga
     2521 ggcgttggcc ggctcgaaca ggtggctctg cgtccccttg cggacgcgca tcagcggcca
     2581 tatgtcaacc ttcagctcct cggcgtagtg gaggagcggc tcgccggtgg gcgtgggcag
     2641 gccgagcgcc tctaccatgg acgactcgta ggaggagact tcggccgagc acagcggcca
     2701 cggctggtgg aatatgcgcg cgcggtatag ctgctcgtcg taggccgtgt agaggcagta
     2761 gcgctcggtg aggaagaagg caagcgagtc gggctccgac tgcggcaggc gctcgcctat
     2821 cttccagcgc gcgtcgaagg aggcggccgg ggcgccctgc tgcacacgcc gcgagctgta
     2881 gtcaatcgtc tgccccgact gccgaaggct tatctcggcg ttgtggtagg gaaggaagaa
     2941 aaactggcgc gcggcccacg tagccaccgt gctagtgatg tcgagcgaga ggaagaggac
     3001 gccggggacg ccgtcgaagt ggacgtaagt ccgcacgtta agctcgtgga aagagctcaa
     3061 gcccggcatc gggggcgcga agtagggccg gacgccccac atcgtgaacg ggactattcc
     3121 gacccacgcc tgcccctcgt gcgtgtctat ggagagctgc ggggggatga gctgccgcaa
     3181 gaggctcggc gcgacgggcc agtgcatgaa gaggagcttg ccccaccact gccgcatgag
     3241 cggcagtccc gcgggcctgc gtcggatggt caggcggtca acgtatcgtg cgctcatgcc
     3301 cttctaaaat aatacggccg ggcgtgcgcg gggaagtttt cggcgtgaag tttgacagcg
     3361 cctcgggtcc cgacgaataa tctgctcgcc gacttagtgc gcccgtcgag actcgccgaa
     3421 ctgaccgaga tgaagcctaa aaggctaacc cccacagccc tccttttgct cgccctgtgc
     3481 gccgcagcct tcgcgcaggc cgggaaggat aacccgaaaa cgtcgaagcc ggcggagaaa
     3541 gtttcgcggg cgaagggcgc taccgagcac gccgcgcccg tcgtctgcat agaccccggc
     3601 cacccctcgg aagtcgcgag cggccgcaac gagcagaacg gcacgaacga gactcgcgtc
     3661 gcgtggtcgg tcgcgctaaa gctgcgcgag agtcttctcg cgcgcggcta cgaggtcgtg
     3721 atgacgaaat cggccgaggg cgagctggtt aggaacaaag accgcgcgct cgtcgccaac
     3781 cgcgcccgcg cggcgctgat ggtcaggctc cactgcgacg cgagcgtcga gcgcggcttt
     3841 gccatctatt accccgaccg tccgggccgc gccaaggacg ggagcaccgg ccccggctcc
     3901 ccggtcgtcg aggccagccg ccgcgccgcg cgggccgtcc actcggggat ggccgagctt
     3961 ctcgcgggct cacttaacga caacggcata cgcaccgact accagaccaa agtcgggcgc
     4021 gagcagggcg gcgcgctcac aggctcgatc ttctcggaag tgccggtggt gacaatcgag
     4081 atggtcgtct taagcgaccc gcaggacgcg gagttcatca agtccgagga agggcagagg
     4141 cgcatggccg aggcgattgc cgaaggcgtc gggcgcttcg tcggccccgc ccacgcaagt
     4201 tcgcctcgca ggcaggatta aaaccccaag aacgcgaaag gagcgttccc cgatgtcaga
     4261 cccctacgca aaactaaaac gggccgcggc ggcgctcgcg ctactgctgg ccgcacacgc
     4321 gctcgcgctg gcggcgcagg aggaagcctt cgaccgcctg tcgaagctgg acttctcgaa
     4381 ggagcgcgtc gagcgcctgg acctaaaaga cctctcgctc tgggagttgc agcgactgcg
     4441 cggcatcatc ttcggccgcc acggccgagt cttcaaagac cgagacattc aggattacct
     4501 gaaggagcag gagtggtacg agccgcgcac gggcttccag aactccatgc tcaacgagac
     4561 ggagcgcgcc aacctcgacc tgatacgcga gatggaggcc gccaagcacg acttcatcga
     4621 gccgggcgac atgcgctggt ggcagacgcg catcatcggc accgacgagt tggggacgca
     4681 cacggccgcc gagtggcgga tactgcgcgc cgaggtcgag gccgtccacg gcaagcgctt
     4741 cgacgaccag ccgtggctcc agcagtactt cgaggatcgc tactggtaca agcccgaccc
     4801 aaactacgac gccaagcgcc tgagcgagaa ggagcgccgc aacatagcga ccattgacgc
     4861 cgcgatgcgc aagcagcgcg gcggcgtctc gctctcgccc ggcgacctcg agcacttcga
     4921 gaaccgcgag ataaccgagg cgatgctcgc cggcctgagc ctccacgagc tgcggctgct
     4981 ccgaaacgaa atctacgcgc ggcgcggccg gcagttcaag accgagtggc tgtctcagta
     5041 tttctggtcg cagccctggt atcagccgcg cgaggacgcg tccgagcccg agctttctcc
     5101 ggtcgagaag aagaacgtcg agaccatcgt cgcctacgag cgcagggtca aggacgacct
     5161 cagccgcaag cctctgccga aggggcttct cgaaggcatg ttcctcgaag acgctcgcaa
     5221 gctccggcag gaaatctacg cgcgccacgg caaggtcttc aaagaccgct ggctgcaaaa
     5281 gtatttccag agcttcgact ggtacaaggc gaaccccagg tactctgacg cggtgctctc
     5341 ggccgtcgag cggcagaaca tcgcggccat agccgcctac gagaagaagg cgacgagcgt
     5401 cctcgacgca gtcgagggtt gataaggccg actccggccc cgcgtgtcgg ggcctacaac
     5461 ttggcgattt cggattgcgg attgctgatt tgaagactgt ggacagatga cggcggcgcc
     5521 gtcgtcaaca ctcccggccc cttcgacccg caatccgcaa tctacaatcc gcaatcaaaa
     5581 tgatttgtcc acagtgccaa ctgcccctgc gcgagggcgc gctgttctgc acgcgctgcg
     5641 gcacgcgcac ggagcacggg cgcgcctcgg gcgcgggccc cgcgcaggcc gaccccgagc
     5701 ggacggcgga ggccggcgcg caccgcgtgg gcgtgaccga gatcgagggc gatgccgacg
     5761 cgctgctggg ccgcgtgctc gacggcaagt acgagataac ggggcggctc ggcgcgggcg
     5821 ggatgggcgc ggtctatcgc gcccggcgcg tccacatcgg cgacgaggtg gcagtcaaag
     5881 tcctgcacac caggttcgtg ggcgacgaga cgctcctcga gcgcttccgc cgggaggcgc
     5941 gcgccgccgc gcagctacac cacccgaacg tcgtcaccat acacgactac ggcgaggcga
     6001 gcggcccgca agggttcgcc tacatcgtca tggagttggt cgccggctta agcctgcgag
     6061 agcttttaag cagggaaggc aggctgggcg tgccgcgcgc cgtctcgctc atgcgagacg
     6121 tttgcgcggg cgtggccgcc gcgcaccgcc gcgagatagt ccaccgcgac ataaagcccg
     6181 acaacatcat cgtgctcccg ccggacgacg accacgactc ggagcgcgtc aaggtcgttg
     6241 acttcggcat cgcgaagctg cgcgacatgg cctctgactc gacgctcacg caggccggcg
     6301 ccgtcgtcgg aacccccttc tacatgtcgc ccgagcagtg ccgcggcgaa cccctcgacg
     6361 cccgcgccga cgtttactcc ctcggcgcgc tcctctacga gatgctcgcc ggctcgccgc
     6421 ccttcacggc gccgagcgtg acgggcgtca tagcgaaaca cctgacggag ccgctaccgc
     6481 cgctcccgcg agacctcaga gcgccgcccg cgctcgaggc ggccgtcact cgcgcgctct
     6541 cgaaagaccg cgaggggcgg cagcgcgacg ccgcagagtt cgcccgcgaa atccagtccg
     6601 catcgtcgtc aacggcgcgg ccgttcgcgg gcgcagaagg cttcctgccc accggctcga
     6661 cgccctcgca ggtcgtcccc gtgcctgtgc cacgccccgc acagcccgcg ccgcaggcgc
     6721 cgccgccgcg gcctcaaatc accaccccac cgccgccgcg cccgcgctcg tggttgaaga
     6781 tagctctggc gctcttcgtc ggcgcgctct tggtgtcggg cgcggtggtc gcggcgtggc
     6841 tcacgatgcc gggcgcgcag tcgaacaggc gcgtcgccgt taacgcgcgg ccgtcgccag
     6901 tgcaggttaa gactccgccg cagaggagaa cgcccacgcc gactccgaca ccgactcccg
     6961 aggcgccggc gccggccgcg gcggaagcgt tgcgcgagga ggtcggcgcg accatcgaag
     7021 actgggccga ggcgacgagt gagcgcgaca tagacgcgca catggccttc tacgccgaca
     7081 cgctcgaaac cttctacacg aagagcggcg ttccagccgc ggaggtgcgt gccgcgcgcg
     7141 agcgcgcctt c
//
LOCUS       DASPKR010000134         8329 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_146152, whole genome shotgun sequence.
ACCESSION   DASPKR010000134 DASPKR010000000
VERSION     DASPKR010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8329)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8329
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146152"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..627)
                     /locus_tag="VD968_03855"
     CDS             complement(<1..627)
                     /locus_tag="VD968_03855"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYE13560.1"
                     /translation="MKILQISSARGFGGGERQLLSLTRGLRERGHEVHVALDPDSPLG
                     RALTRDAAAVPCLRADGLNVTAVRNLARFVRERGVEVVHAHTGYDYPRAAAAVRLSRS
                     RARLVLTRHVLFPMSRINRITLADASRVIAVSEAVARALRARRIFPDEKIRVVHNGVD
                     FEAWARARARTRPRRDETLRVGIIGELSEVKGQADFVRAAALVVRRSTR"
     gene            complement(664..1356)
                     /locus_tag="VD968_03860"
     CDS             complement(664..1356)
                     /locus_tag="VD968_03860"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HYE13561.1"
                     /translation="MIKSVIFDVDGTLVDSVDLHARAWQEALAHFGKDFPFERVRYQI
                     GKGGDQLMPVFLSEEELEKFGDELEEYRGRLFKREYLPRVRGFPRVRQLFERILADGL
                     SIALASSAKQEELEAYKKIAGINDLVDEETSADDAEKSKPHPDIFEAALGRLGNPPAG
                     EVLVIGDTPYDAEAAGKAGLRTVGFLCGGFPEEDLRAAGCFEIYEGAADLLARYDDSP
                     LARRGSGAAARG"
     gene            1659..2159
                     /locus_tag="VD968_03865"
     CDS             1659..2159
                     /locus_tag="VD968_03865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13562.1"
                     /translation="MSKLITGVFKTRVAAEAAVDAIIKRGYTRDDISVLMSDATRSKE
                     FAIETGTRAADGLGIGAAVGGSVVAVLAAIAAVGTTVLLPGIGLIVSGPLAAALAGAG
                     AGGAAGGLIGALVGAGIPEHRAKVYDASLRAGGILIGVEPHTGEEADKIEQLLGDLGA
                     EHVRQE"
     gene            complement(2260..2466)
                     /locus_tag="VD968_03870"
     CDS             complement(2260..2466)
                     /locus_tag="VD968_03870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HYE13563.1"
                     /translation="MANRDEMEGKFDQVKGSVKEGVGRATGDEEMEAEGSMDKLKGDV
                     QEGYGGAKRKIGDVLEDVGDAVRR"
     gene            complement(2773..5994)
                     /locus_tag="VD968_03875"
     CDS             complement(2773..5994)
                     /locus_tag="VD968_03875"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE13564.1"
                     /translation="MPKQPLFNTARALAMLLFCVALGAAGARAQSTTDGAIGGTVRDP
                     NGAVVTNATVTARNEETNRETTATTDDEGRFRIPQLQPGNYTVTVSASGFSNYQQQKV
                     VVEVGRVNSLDVALTVGTAAETVEVTSEAPVVETTRQDFSTNINQTSINELPINGRRW
                     SNFAILTPGSSPDGNFGLISFRGISGLLNNSTVDGGDNNQAFFSEERGRTRISYSISQ
                     SAIREFQVNTSNYSAEYGRAAGGVINAVTKSGTNEFHGDAFYYQRNNSWGARNPRAFI
                     TSFSPATGVSIAGYKPEDVRHQFGGTVGGPIVPDKLFFFFSYDQQKRNFPGLAIFESA
                     SYLNTVNRSALTSRGLTNTQIDNALNFINSLTGEVPRKGDQTLFLPKIDWQVNSSNNF
                     SFTYNRLRWDSPAGIQTQATNTRGRASFGDDFVDIDWFTLRLQSAVTPTFLNEARFQY
                     GRDNEYQNSQEPLAGEPLTADGGTRSPRIRLDNGVEFGKPEFLERRAFPDEKRFQFAD
                     NVTLSRGNHTIKLGLDINHVKDVIDNLRFEAGEYRYNNINDFIIDYTNAITAGGLPGT
                     VNCVANTSRFRGRCYTSNFLQGFGPTRSEFSTNDYNFYIQDDVRVTPKLTLNLGLRYE
                     YQTSPDPQIPNPALPQTSQLADDKDNFGPRLGFAYDIKGDGRTVWRAGYGVYFGRTPN
                     AQISNALTNTGVATAQTQASISPTSSSAPVFPNILPSAAGVAPAVQFFANDFENPEIH
                     QADLILEHQIAKNTAVSISYLVSIGKKLPIYIDTNICPPGSGRSATVGGVNCAATIPA
                     TVSLPVFDGPFAGQTVTVPFFGGPTGNARPNPAFAALTEIRSVVRSDYHAMVLQANRR
                     YTDGLQFQTSYTLASAKDTGQTSAAFPQTNTPANPFDFLGEAGTSSLDVRHKFVASVV
                     WSPDFFGDQGDGDGLGRAIFNGFTIAPVFQAYSGRPRTGFVSGFFANPAGTQNAGGGL
                     SGSGGSSRFPLLPRNSFRERPIYNFDLRVSRRFHIREEMAFEVLGEVFNVFNRTQGTS
                     YNNTLYTIRNNRFEVNPSFGEVTEASGTLFRERQVQLAVRFQF"
     gene            complement(6386..>8329)
                     /locus_tag="VD968_03880"
     CDS             complement(6386..>8329)
                     /locus_tag="VD968_03880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13565.1"
                     /translation="KYTQPSDGALDDTHDRPPLVLRATVDPSGVNRPVIVVVNHTRSF
                     IDIELVAGDGLDVRAKRKAQAESIAGLFQELQTNNPGVPVIAVGDYNAFQFNNGYDDP
                     VSVMKGNPTPDDQIVVDQSPDVVDPNFANLIDDLPAAEQYSFIFEGTPQALDHVLVNT
                     AARARNTRVAVGRVNADFPEVPAAAFASDASRPERNSDHDPVVAYFTLAERHPPGSFI
                     ITEFRFRGPGLAPGGDTAAAGRPLKRRGGKARPERADDPPSNDEFIEFYNNTDSDMEV
                     STSDGSDGWALVASDGVVRFVIPNGTVIPARNYYLAVNENGYSLGNVGPGAEGDFFYT
                     ADIPDGAGIAIFRTSNPANFTESERLDAAGYASAPALYREGAGLDTGPGDAVGGAETT
                     SDLEHSFVRTMDRRTTGRPKDINDNADDFVLVMTEPNTSTSPTAVLGAPGPQGMEAPK
                     EMNAQFPISLIDPQRTTAEPPNRTRNLNDSRGLNGTMALRKTITNETGQDIGFLRFRI
                     VEFTTFNSAQLSPQQAELISINSEDGDLDFCSDFEVQITGGSTVEVHGTSREEPPAQP
                     NGGGLNSTLIAICAPLPGETTIAEGASFNVEFLFAVNRPGNFRFFINVEALPVQTQQP
                     SKPSVRGLRKTASPALKGGRLRP"
BASE COUNT         1269 a         2485 c         3107 g         1468 t
ORIGIN      
        1 tcgcgtcgag cgacgcacaa caagggcggc ggcgcgcacg aagtcggcct gccctttgac
       61 ttcgctcagc tcgccgatta tcccgaccct aagagtctca tcgcgtctag gccgggtccg
      121 ggccctggcg cgcgcccagg cttcgaagtc aacgccgttg tggacgacgc gaatcttctc
      181 gtcgggaaat attcggcggg ctcggagcgc gcgcgcgacg gcctcggaga ccgctatcac
      241 gcgcgaggcg tcggcgagcg tgattctgtt gatgcggctc atggggaaga gcacgtggcg
      301 cgtgaggacg aggcgcgcgc gcgagcggga gagccggacg gccgcggccg cgcgggggta
      361 gtcgtacccc gtgtgcgcat gcacgacctc gacgccgcgc tctctgacga agcgcgcgag
      421 attgcggacg gcagtgacgt tgagcccgtc tgcgcgcagg caagggacgg cggccgcgtc
      481 tcgtgtaagg gcgcggccga gcggcgagtc ggggtcgagc gcgacgtgga cttcgtggcc
      541 gcgctctctc aggccgcgcg tgagcgagag aagttggcgc tcgccgccgc cgaaaccgcg
      601 cgcggagctt atctgaagta tcttcacgcg cgacgattgt atgacaaatc gcgcgcccgc
      661 gtgtcagccg cgcgccgccg cgccggagcc gcgccgcgcg agcggtgagt cgtcgtagcg
      721 cgccagcagg tctgcggcgc cttcgtaaat ctcgaagcag ccggcggcgc gcaggtcttc
      781 ttcggggaag cctccgcaca ggaagccgac cgtgcgcagg cccgccttgc ccgcggcctc
      841 ggcgtcgtag ggcgtgtcgc cgatgacgag aacttcgccc gcgggagggt tgccgagccg
      901 cccgagcgcc gcctcgaaga tgtccgggtg cggcttggac ttctcggcgt cgtcggccga
      961 agtctcttcg tcaacgaggt cgttgatccc cgcaatcttt ttgtaagcct caagctcctc
     1021 ctgcttggcc gaggaggcga gggcgatgct caggccgtcg gcgagtatgc gctcgaagag
     1081 ttggcgcacg cgcgggaagc cgcggacgcg cggcaggtat tcgcgcttga agagacggcc
     1141 gcggtactcc tcaagctcgt cgccgaactt ctccaactct tcctccgaga ggaagacggg
     1201 catgagctgg tcgccgccct tgcctatctg gtagcgcacg cgctcgaagg ggaagtcctt
     1261 gccgaagtgc gcgagcgcct cctgccaggc gcgcgcgtgc aggtcaacgg aatcaacgag
     1321 cgtcccgtcc acgtcgaaga tgacagactt gatcacacag atttctcccg gccgaaaatt
     1381 cgcccacgcg caaaggcagg cacgcgccgt tccagccacg aagacgtgcg cgcggctgcg
     1441 ggcgcgccgc gcggcggctg acagcgaaca gaacacaggc gcgcgttatg tcccggtttg
     1501 gtacgcgcgg caggaagtca gaagagggcg ggctcggtgc gggccggccc tatcgtcttt
     1561 cgctgcatga catgaaggcg cggggccgaa aaccggcacg gctcttgccg aatcagacct
     1621 ttagttcggt gtgcctgaaa ggcggaggtc tgaagtttat gtctaagctg atcacgggag
     1681 ttttcaagac acgcgtcgcg gccgaggcgg ccgttgacgc aatcatcaag cgcgggtaca
     1741 cgcgcgacga cataagcgtg ctgatgtccg acgcgaccag gagcaaggag ttcgcaatcg
     1801 agaccggcac gcgcgcggcc gacgggctcg gcatcggcgc ggccgtcggc ggcagcgtcg
     1861 tagccgtgct cgcggcgata gcggccgtcg gcacgaccgt cctgctgccc ggcatagggc
     1921 tcatcgtgtc ggggccgctg gcggcggcgc tcgcgggggc cggggcgggc ggcgcggcgg
     1981 gcggcctcat tggcgctctc gtcggcgccg gcatcccgga gcaccgcgcc aaagtctatg
     2041 acgcgagcct gcgcgcgggc ggcatactca taggcgtcga gccccacacg ggcgaggagg
     2101 cagacaagat agaacaactg ctcggagacc tcggggcgga gcacgtcagg caggagtaag
     2161 gcgaaagcgg ccgggcgaga aagctgaagg ggccgcgggg cgaacgcgtt cgccccgcgg
     2221 ccccttagtg tttaatgtcg gtggagcgcg caggcgcgct caccggcgca cggcgtcgcc
     2281 cacgtcttcg agcacgtcgc ctatcttgcg cttggcgccg ccgtagccct cctgaacgtc
     2341 gcccttgagc ttgtccatcg agccttcggc ctccatctcc tcgtcgccgg tggcgcggcc
     2401 gacgccctcc ttcacggagc ccttcacctg atcgaatttg ccttccatct cgtccctgtt
     2461 cgccatgacc tcgtcctcct tagaaagtaa gaaacgccct cgaaagaaag ggagagcaca
     2521 cacacagtcg cgtcatacgc ctgtcgtgga gggcaagggt catgccagca ctgcgcctgc
     2581 tcgcgctcgt cgctcgaagt cgttcaggcg cggggggatg tggggacggc accgccttca
     2641 acttcggcgg gcgggcgccc ggcgaggccg cgcgtttccg tacggcctcg ccctgtctta
     2701 ggacaaagaa aaagaggggc gcgaccgtaa cgaaggtcgc gccccggaag ggttaaggta
     2761 ggcgtgcgct ttttagaact ggaagcgcac ggcgagctga acctgtcgct cgcggaagag
     2821 cgtgccgctc gcctcggtga cctcgccgaa ggaggggttg acctcgaagc ggttgttgcg
     2881 gattgtgtag agcgtgttgt tgtagctcgt gccctgcgtg cggttgaaga cgttgaagac
     2941 ctcgccgagg acttcgaacg ccatctcctc gcgtatgtgg aagcggcggg agacgcgcag
     3001 gtcgaagttg tagatgggcc gctcgcggaa cgagttgcgc ggcagcagcg ggaagcgcga
     3061 cgacccgccc gagccgctca ggccgccgcc ggcattctgg gtgcccgcgg ggttggcgaa
     3121 gaagccggag acgaagcccg tgcgcggccg gcccgagtag gcctggaaga ccggcgcgat
     3181 ggtgaagccg ttgaagatag cgcggccgag gccgtcgccg tcgccctggt cgccgaagaa
     3241 gtcgggcgac cacacgacgc tggcgacgaa cttgtgccga acgtcgagcg acgaggtgcc
     3301 ggcctcgccg aggaagtcga aggggttggc cggcgtgttc gtctgcggga aggcggccga
     3361 ggtctggccc gtgtccttcg ccgaggcgag cgtgtagctg gtctggaact gcaggccgtc
     3421 cgtgtagcgg cggttggcct gcaagaccat cgcgtggtag tccgagcgga cgacgctgcg
     3481 aatctcggtg agcgcggcga acgcagggtt aggccgcgcg ttgcccgtgg ggccgccgaa
     3541 gaaaggcacc gtcacggtct ggccggcgaa ggggccgtcg aagaccggga gagacacggt
     3601 cgccgggatg gtggcggcgc agttgacgcc gccgaccgtg gcgctgcggc ccgagccggg
     3661 cgggcagatg ttcgtgtcaa tgtagatcgg gagcttcttg ccgatgctca cgaggtagga
     3721 gatcgagacg gccgtgttct tcgctatctg gtgctcgagg atgaggtcgg cctggtggat
     3781 ctcggggttc tcgaagtcgt ttgcgaagaa ctgcacggcc ggcgcgacgc ccgccgccga
     3841 aggcaggatg ttcgggaaga cgggcgcgct cgacgaggtc ggcgagatgc tggcctgcgt
     3901 ctgcgcggtg gcgacgcccg tgttggtcag ggcgttcgat atctgcgcgt tcggggtgcg
     3961 cccgaagtag acgccgtagc cggcgcgcca gaccgtgcgg ccgtcgccct tgatgtcgta
     4021 ggcgaagccg aggcgcggcc cgaagttgtc cttgtcgtcg gcgagctgcg aggtctgcgg
     4081 cagcgcgggg ttcggtatct gcgggtcggg cgaggtctgg tactcgtagc gcaggccgag
     4141 attgagcgtg agcttcggcg tcacgcggac gtcgtcctgg atgtagaagt tgtagtcgtt
     4201 ggtggagaac tccgagcggg tcgggccgaa gccctgcagg aagttgctcg tgtagcagcg
     4261 gccgcggaag cggctcgtgt tcgccacgca gttgaccgtg ccgggcaggc cgcccgccgt
     4321 gatggcgttc gtgtagtcaa tgatgaagtc gttgatgttg ttgtagcggt actcgcccgc
     4381 ctcgaagcgc aggttgtcaa tcacgtcctt gacgtggttg atgtcgaggc cgagcttgat
     4441 ggtgtggttg ccgcgcgaga gcgtgacgtt gtcggcgaac tggaagcgct tctcgtcggg
     4501 gaaggcgcgg cgctcgagga actcgggctt gccgaactcc acgccgttgt cgaggcgtat
     4561 gcgcggcgag cgcgtgccgc cgtcggccgt gagcggctcg cccgcgagcg gctcctggct
     4621 gttctggtac tcgttgtcgc ggccgtactg gaagcgcgcc tcgttgagga acgtgggcgt
     4681 cacggccgat tgcagccgga gcgtgaacca gtctatgtca acgaagtcgt cgccgaagct
     4741 ggcgcggccg cgcgtgttcg tcgcctgcgt ctgtatgccg gcgggcgaat cccagcggag
     4801 gcggttgtag gtgaagctga agttgttcga gctgttcacc tgccagtcaa tcttgggcag
     4861 gaagagcgtc tggtcgccct tgcgcggcac ctcgccggtc aggctgttga tgaagttgag
     4921 cgcgttgtct atctgcgtgt tggtcaggcc gcgtgacgtg agcgccgagc ggttgacggt
     4981 gttgaggtag ctggccgact cgaatatggc gaggccgggg aagttgcgct tctgctggtc
     5041 gtaggagaag aagaagaaca gcttgtcggg gacgatcggg ccgccgacgg tgccgccgaa
     5101 ctggtggcgc acgtcctcgg gcttgtagcc ggcgatggag acgcccgtcg cgggcgagaa
     5161 gctggttatg aaggcgcggg ggttgcgcgc gccccagctg ttgttgcgct ggtagtagaa
     5221 ggcgtcgccg tggaactcgt tggtgccgct cttggtgacg gcgttgatga cgccgccggc
     5281 ggcgcgcccg tactcggccg agtaattcga ggtgttgacc tggaactcgc gtatggccga
     5341 ctgcgagatg gagtagctga tgcgggtgcg gccgcgctcc tcggagaaga aggcctggtt
     5401 gttgtcgccg ccgtcaacgg tcgagttgtt cagcaggccc gatatgccgc ggaagcttat
     5461 gaggccgaag ttgccgtcgg gcgaagagcc aggcgtaaga atggcgaagt tagaccatcg
     5521 gcggccgttg atgggcagct cgttgatgga ggtctggttg atgttggtcg agaagtcctg
     5581 ccgggtggtc tcgacgacgg gcgcctcgct cgtgacctcg acggtctcgg cggcggtgcc
     5641 gaccgtgagc gccacgtcta gcgagttgac acgcccgacc tcaacgacga ccttctgctg
     5701 ctggtagttg ctgaagcccg aggcggagac ggtcacggtg tagttgccgg gctgtagctg
     5761 cgggatgcgg aagcggccct cgtcgtcggt ggtggccgtc gtctcgcggt tcgtttcctc
     5821 gttgcgcgcc gtcacggtgg cgttggtcac gaccgcgccg ttcgggtcgc gcacggtgcc
     5881 gcctatcgcg ccgtcggtcg ttgactgcgc gcgggcgccg gccgcgccaa gtgcgacgca
     5941 gaagaggagc atcgcgaggg cgcgggcggt attaaaaagg ggctgtttgg gcataatcct
     6001 tccttttcta gcttcggagt ctgttcgggt atttccggga acgggagcca ttccttcagc
     6061 gtttcccggg gccgtcggct gtacctgtct gtacgtgaaa gatggctagg gtgaaagtca
     6121 aaacttaatc ttacgggaag atgttttcgc tagtcttaag acggcgcaaa cgtactgtta
     6181 aatactacat tcgcggcgcg cgcgcaaggc aaaaagggcc gccgcgccaa ctttttcggg
     6241 cgcgcccatt tcgcgcgatt ttgcggggaa aatcgcagct tcccgggggc aaaaaccggg
     6301 gccgcgccgc acgccgcccc gaccgaatcc gaaggtcggg gcggcgtgcg gcgcggcccg
     6361 cgcgggctgc cgcccgcaga gccttttacg gcctgagccg gccgcccttc agggcgggcg
     6421 atgccgtctt gcgtagcccc ctgacggagg gcttggaggg ctgctgtgtc tggacgggca
     6481 gcgcctcgac gttgatgaag aagcggaagt tgcccggcct gttcacggcg aagaggaact
     6541 ctacgttgaa cgacgcgcct tccgcgattg tggtctcgcc cggtagcggc gcgcagatgg
     6601 cgatgagcgt cgagttcagg ccgccgccgt tcggctgcgc gggcggttct tcgcgggagg
     6661 tgccgtgcac ctcgacggta gagccgccgg ttatctgaac ttcgaagtca gagcagaagt
     6721 ccaagtcgcc gtcctcactg tttatggaga tgagttccgc ctgctgcggc gacaattgcg
     6781 cggagttgaa ggtcgtgaac tcgacgatgc ggaagcgcag gaagcctata tcctggcccg
     6841 tctcgttcgt gatggtcttg cgtagagcca tcgtgccgtt caggccccgc gaatcgttca
     6901 agttgcgcgt gcggttgggc ggctctgccg tcgtcctttg cgggtctatg agcgagatgg
     6961 ggaactgcgc gttcatctcc ttcggcgcct ccatgccctg cgggccgggc gcgccgagca
     7021 cggccgtcgg cgaggtgctc gtgttcggct cggtcatcac gagcacgaag tcgtcggcgt
     7081 tgtcgtttat gtccttcggg cggcccgtcg tgcgcctgtc catcgtgcgg acgaagctgt
     7141 gctcgaggtc ggatgtggtc tcggcgccgc cgacggcgtc gccggggccg gtgtcgagcc
     7201 ccgcgccctc gcggtagagc gcgggggccg aggcgtagcc agcggcgtcg agccgctccg
     7261 actcggtgaa gttcgcgggg ttcgacgtgc ggaatatggc gatgcccgcg ccgtcgggga
     7321 tgtcggccgt gtagaagaag tcgccctcgg cgccggggcc gacgttgccg aggctgtagc
     7381 cgttctcgtt gacggcgagg tagtagttgc gcgccgggat gacggtcccg ttcgggatga
     7441 cgaagcgcac gacgccgtcc gaggcgacca gcgcccagcc gtccgagccg tccgaggtcg
     7501 agacctccat gtccgagtcg gtgttgttgt agaactcgat gaactcgtcg ttagagggcg
     7561 ggtcgtcggc gcgctcgggc cgggccttgc cgccgcgccg cttgagggga cggcccgcgg
     7621 ccgccgtgtc gccgcccggc gcgaggccgg ggccgcggaa gcggaactcg gtgatgatga
     7681 acgagccggg cgggtgccgc tcggcgagcg tgaagtaggc cacgacgggg tcgtggtcgg
     7741 agttgcgctc gggccgcgag gcgtccgagg cgaaggcggc ggccgggacc tcggggaagt
     7801 ccgcgttgac gcgcccgacg gccacgcgcg tgttgcgcgc gcgcgcggcc gtgttgacga
     7861 gcacgtggtc cagagcctgc ggcgtcccct cgaagatgaa gctgtactgc tcggccgcgg
     7921 gcaggtcgtc tatgaggttg gcgaagttcg ggtcaacaac gtccgggctc tggtcaacga
     7981 ctatctggtc gtcgggcgtc gggttaccct tcatgacgct gacggggtcg tcgtagccgt
     8041 tgttgaactg gaaggcgttg tagtcgccga cggcgatgac cggcacgccg gggttgttgg
     8101 tctgcaactc ttggaagagt ccggcgatgg actcggcctg cgccttgcgc ttggcgcgca
     8161 cgtcgaggcc gtccccggcc accagttcga tgtcgatgaa cgagcgcgtg tggttgacga
     8221 cgacgatgac ggggcggttg acgccggagg ggtcgaccgt cgcgcgcagg acgaggggcg
     8281 ggcggtcgtg cgtgtcgtcg agcgccccgt cgctcggctg cgtgtactt
//
LOCUS       DASPKR010000135         2659 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1311061, whole genome shotgun sequence.
ACCESSION   DASPKR010000135 DASPKR010000000
VERSION     DASPKR010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2659)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1311061"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1449)
                     /locus_tag="VD968_03885"
     CDS             complement(<1..1449)
                     /locus_tag="VD968_03885"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HYE13566.1"
                     /translation="MLVKTEQDEIQSFLADASNLAGGHAQSVVFPESAEEAAEFLARA
                     SRERTPVTVAGAGTGIVGGRVPFGGAVLSTRRLNRIEEIVVDESGGGRAVVGAGVVLA
                     DFQREAEARGLFYPPDPTERSCQLGGTIATNASGARSFKYGPTRRYVRRLRVALATGD
                     VLDIGRGEIFADAGGRLSLPLAGGRSIEARLPSYTMPRTRKHAAGYFSAPGMDALDLF
                     VGSEGTLGVIAEAELDLLPRPEGVLAGIVFFEAEDGLLAFVREARSLSFAARAGGAPA
                     AVDARALEYFDSESLKFLRERYPLVPLRAACAVFFEQEVTAEAEEAVMSAWLELLERH
                     GALVDDSWFGTSEHDRLEMREFRHHLPVMVNEWLARHGQRKVSTDAAVPDEAFPEMLA
                     LYKSTLRSMGLRHVVFGHIGDNHVHVNILPRDGFERLAAQEAYARFIRRAVEAGGTVS
                     AEHGVGKIKREYLRELYGDRHLREMADLKRAFD"
     gene            complement(1456..>2659)
                     /locus_tag="VD968_03890"
     CDS             complement(1456..>2659)
                     /locus_tag="VD968_03890"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HYE13567.1"
                     /translation="EELEWWEPQLIKEGKLVEAQRLHQRTMYDLEMIKEMGFCRGIEN
                     YSRHLTGKPPGAPPPTLLDYLPEGTIVVIDESHQTVPQVRGMFNGDQSRKRTLVEYGF
                     RLPSAMDNRPLNFEEFEARIGQTIYVSATPGPYELTRTGGEVVEQIIRPTGLTDPAVE
                     VRPVRGQIDDLLGECRARAERNERVLVTTLTKKMAEDLTEYFAEVGVRVRYLHSDIET
                     LERIRILRDLRRGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSESSLIQTIG
                     RAARNANGMAILYADKVTDSMRRAIGETERRRQIQMEYNREHGITPQTIIKPVEATLV
                     TAYEADYFKVPLDLDRIEEYTAGNIEATIARLEQEMRAAAKNLEFERAAELRDRVKYL
                     RERELQMT"
BASE COUNT          386 a          891 c          924 g          458 t
ORIGIN      
        1 gtcgaaggcg cgcttcaagt ccgccatctc gcgcaagtgc cggtcgccgt aaagctcgcg
       61 caggtactcg cgctttatct tcccgacgcc gtgctcggcc gagacggtgc cgcccgcttc
      121 gacggcgcgg cgtatgaacc gagcgtaagc ctcctgcgcc gccagccgct cgaagccgtc
      181 gcgcgggagt atgttgacgt ggacgtggtt gtcgcctatg tggccgaaga cgacgtggcg
      241 cagccccatc gagcgcagag tgctcttgta gagcgcgagc atctcgggga acgcctcgtc
      301 ggggacggcg gcgtcggtcg agaccttgcg ctggccgtgg cgcgcgagcc actcgttgac
      361 catgacgggg agatggtgcc ggaactcgcg catctccaaa cggtcgtgct cgctcgtgcc
      421 gaaccacgag tcgtccacga gcgcgccgtg ccgctcaagc agttcaagcc acgcggacat
      481 cacggcctcc tccgcctcgg cggttacctc ctgctcgaag aagacggcgc aggccgcgcg
      541 cagcgggacg agcgggtagc gctcgcgcag gaacttaagc gactctgagt cgaagtattc
      601 gagggcgcgg gcgtcaacgg ccgcgggggc gccgcccgcg cgcgctgcga aggagagcga
      661 gcgcgcctcg cgcacgaagg cgagcaggcc gtcttccgcc tcgaagaaga ctatgccggc
      721 gagcacgcct tcggggcgcg ggaggaggtc aagctcggcc tcggctatga cgccgagggt
      781 gccttcgctg ccgacgaaga ggtctagtgc gtccatgccc ggcgccgaga agtagccggc
      841 ggcgtgcttg cgcgtccgcg gcatcgtgta ggacgggagc cgcgcctcta tgctccggcc
      901 gcccgctaga gggaggctca gccggccgcc cgcatcggcg aagatttcgc cgcgccctat
      961 gtcgagcacg tcgcctgtcg cgagcgccac gcgcagccgc cgcacgtagc ggcgcgtcgg
     1021 cccgtacttg aagctgcgcg cgcccgaggc gttcgtcgca atcgtgccgc ccagttggca
     1081 gctacgctcg gtcgggtcgg gcggatagaa gaggccgcgc gcctccgcct cgcgctggaa
     1141 gtcggcgagc accacacccg cgccgacgac cgcccgaccg ccgccgcttt cgtcaacgac
     1201 tatttcttca atccgattca gccggcgcgt cgagagcacc gcgcccccga acggcacacg
     1261 cccgccgact atcccggtgc cggcgcccgc gaccgtgacg ggggtgcgct cgcgcgacgc
     1321 gcgggcgagg aactcggccg cctcttccgc gctctcgggg aagaccacgc tttgtgcgtg
     1381 gccgcccgcg aggttgctcg cgtcggcgag gaacgactga atctcgtcct gttcggtttt
     1441 gacgagcatg ggcgttcagg tcatctgaag ctcgcgctcg cggaggtact tgacgcggtc
     1501 gcgcagctcg gcggcgcgct cgaactcgag gttcttggcg gcggcgcgca tctcctgctc
     1561 caaacgggct atcgtcgcct cgatgttgcc ggccgtgtac tcctctatgc ggtcgaggtc
     1621 tagcggcacc ttgaagtagt cggcctcgta ggctgtgact agcgtggcct cgacgggctt
     1681 gatgatggtc tgcggggtga tgccgtgctc gcggttgtac tccatctgaa tctgccggcg
     1741 gcgctcggtc tcgccgatgg cgcggcgcat cgagtcggtc actttgtcgg cgtagaggat
     1801 cgccatgccg ttggcgttgc gggcggcgcg gcctatggtc tgtatgagcg acgactcgga
     1861 gcgcaggaag ccctctttgt cggcgtcgag tatggcgacg agcgagactt cgggcaggtc
     1921 tagcccctcg cgcaggaggt tgatgccgac gagcacgtcg aactcgccgc ggcgcaggtc
     1981 gcgcaagatt cgtatgcgct ccagagtctc tatgtccgag tgcaggtagc ggacgcgcac
     2041 ccccacctcg gcgaagtact cggtcaagtc ctccgccatc ttcttcgtga gcgtcgtcac
     2101 cagcacgcgc tcgttgcgct cggcgcgagc gcggcactcg cccaggaggt cgtcaatctg
     2161 tccgcgcacg gggcgcacct cgacggccgg gtctgtcagg ccagtcggcc ggattatctg
     2221 ctcgacgacc tcgccgcccg tgcgcgtcag ctcgtaaggg ccgggcgtcg cggagacgta
     2281 gatggtctgg cctatgcgcg cctcgaactc ctcgaaatta aggggccggt tgtccatcgc
     2341 cgagggcagg cggaagccgt actcgacgag cgtgcgcttg cgcgactggt cgccgttgaa
     2401 catgccgcgc acctgcggga ctgtctggtg cgactcgtct atgacgacga ttgtgccttc
     2461 gggcagatag tcgaggagcg tgggcggggg cgcgcccggc ggcttgcccg tcaggtggcg
     2521 cgagtagttc tcgatgccgc ggcagaagcc catctcctta atcatctcca ggtcgtacat
     2581 cgtgcgctgg tgcaggcgct gcgcctcgac gagcttcccc tccttgatta gctgcggctc
     2641 ccaccactcc agctcttcg
//
LOCUS       DASPKR010000136         4286 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_793021, whole genome shotgun sequence.
ACCESSION   DASPKR010000136 DASPKR010000000
VERSION     DASPKR010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4286)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4286
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_793021"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..559)
                     /locus_tag="VD968_03895"
     CDS             complement(<1..559)
                     /locus_tag="VD968_03895"
                     /inference="COORDINATES: protein motif:HMM:NF012702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13568.1"
                     /translation="MHRPRRLRRREGLRAMVREARVAPENLVLPLFACPGEGVRREVS
                     SMPGVFNLSVDEVAREAAAAFEAGVPAVILFGLPESKDETASGAYAERGIVQEAIRAV
                     RRAVPDMIVVADTCLCEYTSHGHCGVVRGGEVLNDESLELIARTAVSQAEAGADIVAP
                     SAMMDGQVGAIRESLDGAGFEHVAVM"
     gene            714..787
                     /locus_tag="VD968_03900"
     tRNA            714..787
                     /locus_tag="VD968_03900"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:748..750,aa:Met,seq:cat)
     gene            complement(977..1585)
                     /locus_tag="VD968_03905"
     CDS             complement(977..1585)
                     /locus_tag="VD968_03905"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HYE13569.1"
                     /translation="MSVPSDREGLRFPCECVSGRGSGYSDPWTGITKNKLLPNGTKEE
                     ILNLLVREPKTISQLAAELNLSPPSVYAHVSDMLKSELLRESEEWEKKHPSERYYEPN
                     FPVFRAEECAKFEALCREMAEQVVALFEKKRPQMERAYNKTDFASRGWELSDVTQCLY
                     ANMQRNARALLEQRGILRAPEKHANGVEWVFWAEEPKADGNR"
     gene            1838..2725
                     /locus_tag="VD968_03910"
     CDS             1838..2725
                     /locus_tag="VD968_03910"
                     /inference="COORDINATES: protein motif:HMM:NF022604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2935 domain-containing protein"
                     /protein_id="HYE13570.1"
                     /translation="MTDNTGRITRRDILLTGGAALAGTTLLGTLSNIAWGQTTKQLGV
                     TTKNGGTKPIYVPDSGTNDPVAHSLADNLFWTDILMEHAKFFVMLMPGPELAAQRGRA
                     EQFQASFASQFAKAQSASLDRSNFAAFNRSTVELVKPFVDFKHEMKAAQEAGKLNSLV
                     WPLFFEHTAREAERFTRRLDRLSRGEAALERGEVVDFWTMIMAEHADFVAHLLDPQEN
                     ALVQKAMQTSTAFRGLHAQKPASKDPVEKAVNDIIDFKVAAGKGIQTGTIKSIIHPAL
                     ADHVRREAGKFADELKRAA"
     gene            2885..3271
                     /locus_tag="VD968_03915"
                     /pseudo
     CDS             2885..3271
                     /locus_tag="VD968_03915"
                     /inference="COORDINATES: protein motif:HMM:NF021505.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2231 domain-containing protein"
     gene            3389..>4286
                     /locus_tag="VD968_03920"
     CDS             3389..>4286
                     /locus_tag="VD968_03920"
                     /inference="COORDINATES: protein motif:HMM:NF014795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HYE13571.1"
                     /translation="MAETAADVLVEGIIDWGVDTVFGLPGDGINGIMEALRQRQDRVR
                     FIQVRHEEAAAFMACAYAKYTGRLGCCLATSGPGGIHLLNGLYDAKMDQAPVLAITGQ
                     TYSDLKGSKFQQEVNMALLFEDVSVYNQEVINPEQVAMLADAACRHALNNRGVAHITF
                     PVDYQEKEPKGKGTMHKVEGHTTSRWSPPIAVPPEEELKLAALILNEAKKPVILIGQG
                     ALSAGEEVIELADKLGAPVVKALLGKAVIPDDHPLTTGGLGLLGTGPSQEAMEQADAL
                     LIIGSSFPYMEYLPKPGQAKGVQ"
BASE COUNT          846 a         1403 c         1270 g          767 t
ORIGIN      
        1 acatcacggc cacgtgctcg aagcccgcgc cgtcgagcga ctcgcgtatg gcgcccacct
       61 gcccgtccat catggccgac ggcgcgacga tgtcggcccc ggcttcggcc tggctcacgg
      121 ccgtgcgggc gatcagctcc aacgactcgt cgttcaagac ctcgccgccg cgcaccacgc
      181 cgcagtggcc gtgcgacgtg tactcgcaaa ggcaggtgtc ggcgaccact atcatgtctg
      241 ggacggcccg ccgcacggcg cgtatggcct cctggacgat gccgcgctcg gcgtaggctc
      301 ccgaggccgt ctcgtccttc gactcaggca gcccgaacag tatgacggca gggactcccg
      361 cctcgaaggc cgcggcggcc tcgcgcgcga cctcgtccac ggagaggtta aagacgcccg
      421 gcatggacga gacctcacgt cgcacgccct cgcccgggca cgcgaagaga ggcagcacga
      481 ggttctctgg cgcgacgcgc gcctcgcgca ccatcgcgcg cagcccctcg cgccgccgca
      541 gccgcctggg gcgatgcaca agctcactca tttccgctat ctctcactta acagaggggt
      601 aagaccgatg acggccgaat gatacgtccc gcccgccgcc aacgcaaacc accgcgccca
      661 cccacttgac ctttccgcaa cgaactttaa taatgaacct ctcttctcaa cgtggcgggg
      721 tagctcagct ggtgagagcg tgggattcat aaccccaagg tcgggagttc aagtctcccc
      781 cccgctattc accttacctc ctacgactca ggtatttgcc gcctgccggc tggccccgaa
      841 cgggactagc cggcaatttt gtcgtggccg gaagcctaca ctctctgtaa cggacgttgc
      901 gcgagtatct ccgcttctgg aagtaagctc ggcgcgactc ccttccagca gaagacgttt
      961 agacggcaga gaatcgtcac ctgttaccgt ctgccttcgg ctcctccgcc caaaacaccc
     1021 actcgacgcc gttagcatgc ttctcgggcg cgcggagaat tccgcgttgc tcaagcaggg
     1081 cgcgcgcgtt gcgctgcatg ttggcgtaca agcactgcgt cacgtccgag agttcccaac
     1141 cacgactcgc aaagtcggtc ttgttatagg cgcgctccat ctgcgggcgc ttcttctcga
     1201 atagggcgac cacctgttcg gccatctccc gacatagagc ctcgaacttg gcgcactcct
     1261 cggccctgaa gaccggaaag ttcggctcgt agtaacgctc ggacgggtgc ttcttctccc
     1321 actcctcgga ttccctgaga agctcgctct tcagcatgtc gctgacgtgc gcgtaaacgc
     1381 tcggcggcga gagattaagc tccgcggcga gttgagagat ggtcttcggc tcgcgcacca
     1441 agagattcag aatctcttct ttagtcccgt taggaaggag cttattttta gtaattcctg
     1501 tccacgggtc actgtagccg ctgccccgcc ccgacacaca ctcgcagggg aaccgtaacc
     1561 cctcacgatc actaggcacg ctcatcagac acccctttac agacccgctt ttagggagta
     1621 tcctaaaagc ccagtcctct aaaaaatacc cccggcctct cagccaaggg gacacgaaac
     1681 gttgacgcgt atgttcgcgg tggaacgtaa cattgaccgc cgtatttatg caaagccggg
     1741 agacccggcg cgctacggat tttacaccct cgcttccgag cacaagagac gcccccttcg
     1801 gtccgcccta attttttatc aaaggaggta agggaagatg actgataaca cgggccggat
     1861 cacgcgccgc gacatcctcc tcacgggagg ggccgcctta gcgggaacta ctttgcttgg
     1921 cacgttgtcc aacatcgcgt ggggacaaac tacgaagcag ctgggcgtga cgactaaaaa
     1981 cggcgggacg aagccaatct acgtgccaga ctccggcacg aacgaccccg tcgcgcactc
     2041 gctcgccgac aatttgttct ggaccgacat cctgatggag cacgccaagt tcttcgtcat
     2101 gctgatgccg gggccggagc tggcggcaca gcgtgggcgg gcggagcagt ttcaggcgtc
     2161 cttcgccagc cagttcgcca aagctcagag cgccagcctc gaccgctcga acttcgccgc
     2221 cttcaaccgc tcgaccgtcg aactcgtgaa gccgttcgta gacttcaagc acgagatgaa
     2281 ggcggcgcag gaagcgggca agctgaacag tctcgtctgg ccgcttttct tcgagcacac
     2341 ggcacgcgaa gccgagcggt tcacgaggcg gctcgacaga ctctcgcgcg gcgaggccgc
     2401 gctggagcgg ggcgaggtgg ttgacttctg gacgatgatc atggccgagc acgccgactt
     2461 cgtcgcgcac ctgctcgacc cgcaagagaa cgcgctcgtc cagaaggcga tgcagacgag
     2521 cacggccttc cgcggcctgc atgcgcaaaa accggcctcg aaagacccgg tcgagaaggc
     2581 tgtgaatgac atcatcgact tcaaggtcgc agccgggaaa ggcatccaga ccggcacgat
     2641 caagagcatc atccacccgg cgcttgcaga ccacgtccgg cgcgaggccg gcaagttcgc
     2701 cgacgaactg aagcgcgcgg cgtaaactat caccattttt cgagaggagg ccgcagcttt
     2761 gagaagcggc ctcctctctt ataaggagat agctatggca agtcctgcaa gtcttggtcg
     2821 gcatccgatt cacccgatgc tcatcccgtt cccgctggca ctctagttct cctcgttcgt
     2881 cgcggacgtg atctaccttt ggcgcggcaa tcccgtgtgg cgagactgga tcgcgttcta
     2941 tacgctctta ggcggcacca tcatggcggt ggtggccgcc gtgcccggcc tcatcgactg
     3001 gctttcgatt acagatcggg aggtgaagaa gatcgccaac tggcacgcgc gcctcaacgt
     3061 tatcgcccta ctgatcttcg cggccagctt ttacctgcgc acgacgagcg gcgcagagtt
     3121 ggtgggcgga agctacacca tccccttcgt gctctccgtc ataggcgtta tcctgatcac
     3181 gatctccggc tggctcggcg gcgagttggt cttcaggcac ggcgtggcgg tagaccggca
     3241 atccgacacg ggagcggaag tgaaaagtta aagcgcgcga cgcttgatgc gcgcttccgg
     3301 cgtgcgaggg aagagtcatt aacacgactc cggattcgca gtgctcggga tgaagcctat
     3361 cttcacccgt cgctgagggg gaaagagtat ggcagagaca gccgctgacg tgctcgtcga
     3421 gggcattatt gattggggcg tggatacggt cttcggactg ccgggcgacg gcatcaacgg
     3481 catcatggag gctctccggc agcggcagga tcgcgtgcgc ttcatacagg tgcgccacga
     3541 agaggccgcc gccttcatgg cctgcgccta cgccaagtac acgggtcgct tgggctgctg
     3601 cctcgctacc tccggccccg gcggcataca tctccttaac ggcctctacg atgccaagat
     3661 ggatcaagcg cccgtgctcg ccatcacggg gcagacctac tccgacctga agggcagcaa
     3721 gttccagcag gaggtgaaca tggcgctcct cttcgaggac gtgtctgtct ataaccaaga
     3781 ggtcatcaac cccgaacaag tagcaatgct cgccgacgcc gcgtgccgcc acgcactcaa
     3841 caaccgaggg gtggcgcaca tcaccttccc cgttgactat caggagaaag agccgaaggg
     3901 caagggcacg atgcacaagg tcgaggggca tacgacgagc cgctggtcgc cgcccatcgc
     3961 cgtcccgccg gaagaagagc tgaagctagc ggccctcatc ctcaacgagg cgaagaagcc
     4021 cgtcatcctc atcggtcagg gcgctctcag cgcgggcgaa gaggtgatcg agttggccga
     4081 caaactcggc gcgcccgtcg tcaaggcgct gctcggcaag gcggtcattc cggacgacca
     4141 cccgctgacg acgggcgggc tcgggctgct cggcactggc ccgtcgcaag aggcgatgga
     4201 gcaggccgac gcgctcctca tcatcggctc ttcattcccc tacatggagt acctgccgaa
     4261 gcccggtcag gcgaagggcg tgcaga
//
LOCUS       DASPKR010000137         2974 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_922875, whole genome shotgun sequence.
ACCESSION   DASPKR010000137 DASPKR010000000
VERSION     DASPKR010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2974)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2974
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_922875"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..270)
                     /locus_tag="VD968_03925"
     CDS             complement(<1..270)
                     /locus_tag="VD968_03925"
                     /inference="COORDINATES: protein motif:HMM:NF024842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE13572.1"
                     /translation="MKKVVIVGGGVSGLAAAHRALELSAERREARPEVLLLEASERLG
                     GTVRTLRREGFLLEGGPDSFISEKPAALELAKRLGIAGRIIETSPA"
     gene            complement(304..1329)
                     /locus_tag="VD968_03930"
     CDS             complement(304..1329)
                     /locus_tag="VD968_03930"
                     /inference="COORDINATES: protein motif:HMM:NF000689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HYE13573.1"
                     /translation="MAETFDALLVVSFGGPEGMGDVMPFLENVLRGRNVPAERMREVA
                     HHYEMFGGVSPINAQNRALIAALERELGEKGPRLPVYWGNRNWHPMLADTLRRMRDEG
                     VRSALAFVTSAYSSYSGCRQYREDIERARAEVGDGAPRVEKLRAFFNHPGFVGPNVEH
                     VRAALDEIPADRRGSAYLAFTAHSIPSAMAANCDYQEQLLETCMLVAEGAGHPRWRLV
                     FQSRSGPPTQSWLGPDICDYLRGLQAEGARDVVVSPVGFISDHMEVLYDLDTEARRLA
                     GELGLNLVRAATVGTHPKFVSMIRELILERTDGSAPRRALGSLPPRPDVCRPDCCLPA
                     SRPSAGA"
     gene            complement(1338..2414)
                     /gene="hemE"
                     /locus_tag="VD968_03935"
     CDS             complement(1338..2414)
                     /gene="hemE"
                     /locus_tag="VD968_03935"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: protein motif:HMM:NF013381.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HYE13574.1"
                     /translation="MSEATKPVTSPEGMSRELWDSPFMRACRREQVPHTPVWLMRQAG
                     RYMKEYRDVRARHTFLEMCKKPEVAAEVTVYAAHRLNVDAAIIFADILLIIEPMGLEL
                     EFAKGEGPVIHNPVRSAEDLGRLREVEDASSLSYVYDAIRLTRRELKPDIPLIGFCGA
                     PFTLASYIIEGGGSKNYVNTKRLMWTDPGAWHALMSLIARALPRYLNAQVEAGAQAVQ
                     IFDSWVGALSPDDYREFVLPHTRAVIEQVKPGVPVIHFGMGTATLLELMREAGGDVIG
                     LDWRVRLGEAWARLGDVAVQGNFDPIALFTNPEVIRQRARIILDQAANRPGHIFNLGH
                     GILPETPVENVVALVEAVQELSRR"
     gene            complement(2551..>2974)
                     /locus_tag="VD968_03940"
     CDS             complement(2551..>2974)
                     /locus_tag="VD968_03940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13575.1"
                     /translation="VGKASCEARVENNTTHTVNDGVPQRAKWSRVECSFPVVKRWDKT
                     DGGKGQPNTNEMFKMASNPGEYEFKVLWNNKLARSIKFTVGPEGKLDNGIAAANKLGI
                     DRVVVPVAVLGDQDGAWDKAAWKTDAFYGHPLTGFNAP"
BASE COUNT          462 a          983 c         1014 g          515 t
ORIGIN      
        1 cgccgggctc gtctcgatga ttctgccggc tatgccgagc cgcttcgcca gctcgagcgc
       61 cgccggcttc tcggagatga aagagtcggg gccgccttcg agcaggaacc cttcgcggcg
      121 cagagtcctg accgtcccgc cgagccgttc ggaggcttcg agcagcagga cttcgggccg
      181 cgcttctcga cgctcagcgc tcagctcaag ggcgcggtgc gcggccgcca gcccgctcac
      241 gccgccgccg acgatgacga ccttcttcat cggggttcgg aattcgtgat ttgaaatttc
      301 aaatcatgct ccggcggacg ggcgcgaggc gggcaggcag cagtcggggc gacaaacgtc
      361 cgggcgcggc gggagcgagc cgagcgcgcg ccgcggcgcg ctgccgtccg tccgctcaag
      421 gataagctct cgtatcatcg agacgaactt cgggtgcgtc ccgacggtcg ccgcgcgcac
      481 gaggttgagg ccgagctcgc cagccagccg ccgcgcctct gtgtcgaggt cgtagaggac
      541 ttccatgtgg tcggagatga agccgacggg cgagacgacc acgtcgcgcg cgccctcggc
      601 ttgaagcccg cgcaggtaat cgcagatgtc cggcccgagc cagctttgcg tgggcgggcc
      661 gctgcggctc tggaatacga gacgccagcg cgggtggccc gcgccctccg cgaccagcat
      721 gcacgtctca agtaactgtt cctggtagtc gcagttcgcc gccatcgccg aagggatgct
      781 gtgcgcggtg aacgcgaggt acgccgaccc gcgcctgtca gcagggattt catcgagcgc
      841 cgcgcggacg tgctcgacgt tcggcccgac gaagccgggg tggttgaaga aggcccgcag
      901 tttctcgacg cgcggcgcgc cgtcgcccac ctcggcgcgc gcacgctcga tgtcctcgcg
      961 gtactggcgg cagccggagt aagagctgta ggcggaggtg acgaaggcga gcgcgctacg
     1021 caccccttcg tcgcgcatgc ggcgcagggt gtcggcgagc atggggtgcc agttgcggtt
     1081 gccccagtaa acgggaaggc gcgggccttt ctccccgagc tcgcgctcga gcgcggctat
     1141 cagcgcgcgg ttctgtgcgt tgatggggct cacgccgccg aacatctcgt agtggtgcgc
     1201 gacctcgcgc atgcgctccg cggggacgtt gcggccgcgc aggacgttct cgaggaaggg
     1261 catcacgtcg cccatcccct cggggccgcc gaacgagacg acgagcagcg cgtcgaaagt
     1321 ctcagccact tgaactctta tctcctgctc agctcctgga cggcctcgac taaggcgact
     1381 acgttctcga ccggcgtctc ggggaggatg ccgtggccga ggttaaagat gtggccggga
     1441 cgattggccg cctggtcgag aattatcctg gcgcgctggc ggatgacctc ggggttagtg
     1501 aagagggcga tggggtcgaa gttgccctgc acggccacgt cgcccagccg cgcccacgcc
     1561 tcgcccaaac gcacgcgcca gtcgaggccg ataacgtcgc cgcccgcctc gcgcatcagc
     1621 tccagcagcg tcgccgtccc catgccgaag tgtatgacgg ggacgcccgg cttgacctgc
     1681 tcgatgacgg cgcgggtgtg cgggagcacg aactcgcggt agtcgtcggg cgagagcgcg
     1741 cctacccacg agtcgaaaat ctgcacggcc tgcgcgccgg cctcgacctg cgcgttgagg
     1801 tagcgcggca gagcgcgcgc aatcagcgac atcagcgcgt gccaggcgcc ggggtctgtc
     1861 cacatcagcc gcttggtgtt gacgtagttc ttcgagccgc cgccctcgat tatgtatgag
     1921 gcgagcgtga agggcgcgcc gcagaagcct atgagcggga tgtcgggttt gagttcccgg
     1981 cgcgtcagcc gtatggcgtc atagacgtag gagagcgacg acgcgtcctc gacttcgcgc
     2041 aggcggccca ggtcttcggc cgagcgcacg gggttgtgta tgacggggcc ttcgcccttc
     2101 gcgaactcta gctcgagccc catcggctcg atgatgagca gtatgtctgc gaagatgatg
     2161 gcggcgtcaa cattcaggcg gtgcgccgca tagaccgtga cctcggccgc aacctcgggc
     2221 ttcttgcaca tctcgaggaa ggtgtgccgg gcgcgcacgt cgcggtactc cttcatgtag
     2281 cgcccggcct gtcgcatgag ccagacgggc gtgtgcggca cctgctcgcg gcggcaggcg
     2341 cgcatgaagg ggctgtccca aagctcacgg ctcatcccct ccgggctcgt cacgggctta
     2401 gtcgcttcgc tcatcagttc agtgtggcag gaacccttcc cgctcttgtc ggagcgccga
     2461 caatataaca gaaggatgga gaacgaaggg aatgcctcac ggcgtcgcct tcatccccca
     2521 tcctcccgcc ttcgccatta cgacggaggc ttacggcgcg ttgaagcccg tcagcgggtg
     2581 gccgtagaag gcgtcggtct tccaggccgc cttgtcccac gcgccgtcct ggtcgccgag
     2641 gacggcgacg gggacgacga cgcggtcaat cccgagcttg ttggccgcgg cgatgccgtt
     2701 gtcgagcttc ccttcggggc cgaccgtgaa cttgattgag cgggccagct tgttattcca
     2761 aagcaccttg aactcgtact cgccggggtt cgaggccatc ttgaacatct cgttggtgtt
     2821 gggctgaccc ttaccgccgt ccgtcttgtc ccaccgcttc acgacgggga agctgcactc
     2881 gacgcgcgac cacttcgccc gctgcggcac gccgtcgttg accgtgtgcg tcgtgttgtt
     2941 ctcaacccgt gcctcgcaac tggccttgcc tacc
//
LOCUS       DASPKR010000138         2158 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1441472, whole genome shotgun sequence.
ACCESSION   DASPKR010000138 DASPKR010000000
VERSION     DASPKR010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2158)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2158
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1441472"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..451)
                     /locus_tag="VD968_03945"
     CDS             complement(<1..451)
                     /locus_tag="VD968_03945"
                     /inference="COORDINATES: protein motif:HMM:NF015791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate epimerase"
                     /protein_id="HYE13576.1"
                     /translation="MKKIVTAAEMREVDRLTTELYATPSLLLMEAAAGAAARVIASHF
                     SHDLSGRRVQILCGRGNNGGDGAALARALLTAGARVDLVLFGRAEDSRGDARTNFDIV
                     RGLAGAGGTASPSSLAFSQCEGAAEWESLANSHGNYEVVVDALFGTGL"
     gene            complement(785..1552)
                     /locus_tag="VD968_03950"
     CDS             complement(785..1552)
                     /locus_tag="VD968_03950"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HYE13577.1"
                     /translation="MLNRIRALARPFTLGLAAIAFLALAPSAAKADEVFVAGYTNGCF
                     STDPNVPCNPPATNATQQNSLLGLFYTNSTFSGTTASGFLAFGGAPTPQGTQSVDNLG
                     SFFLDATVPANYNGNTFTLRVTFTAPQGIVGNASQVFTATLTGTVRTDQSGGVRIDFD
                     DVANQGILFTFQDANCEPNPNPNAVPPGQFTTCGNGSFMLQINDLSINPGNNAALNGN
                     IIAGQQVIPEPATMVLLGTGLAGIAAGARRRRKAAKK"
BASE COUNT          380 a          639 c          740 g          399 t
ORIGIN      
        1 tgaggcccgt gccgaagagc gcgtcaacga ctacttcgta attcccgtgc gagttcgcga
       61 gcgattccca ctcggctgcc ccttcgcact gcgagaacgc gagtgacgaa gggctcgccg
      121 tgccgcccgc gcccgcgagc ccgcgcacga tgtcgaagtt ggtgcgggcg tcgcccctag
      181 agtcttcggc gcgcccgaag aggacgaggt caacgcgcgc gcctgccgtc aggagcgcgc
      241 gggcaagggc cgcgccgtcg ccgccgttgt tgccgcgccc gcagaggatt tgaacgcgcc
      301 tgcccgagag gtcatgcgag aagtgcgagg cgatcacgcg cgccgcggcg ccggccgccg
      361 cctccatcag gagcagcgaa ggcgtcgcgt aaagctccgt cgtcaggcgg tcaacctcgc
      421 gcatctcggc tgccgtgact atcttcttca cgcgcgggat gataacacgg acggtgaggg
      481 gagcgggcgg gctagggcgg ggcgaaagtg gccggcgctg gggcctcgca cggcgccgcc
      541 aaaaatagaa aaaggcgcct tctgcgcctg ccccctgccg ctacgcctac cgcctcgccg
      601 agcaaccttg tcgtgtaact cagggaaatg ttcaatcggg ttggctctcc agaaaaaatc
      661 agccccaggc gaaaatattt tcgtcttggc gcggtgcgag gtttctggaa cgaaaaagcc
      721 gggccggctg tggggccggc ccggctttcc aggaacttgc cgtcagggaa cggcgggaga
      781 agagttactt tttggcggcc ttgcggcggc ggcgggcgcc ggccgctata ccggccagcc
      841 ccgtgccgag cagtaccatc gtcgccggct caggtatcac ctgctgcccg gcgatgatgt
      901 tgccgttcag cgcggcgttg ttcccggggt taatcgagag gtcgttgatt tgcagcatga
      961 acgagccgtt gccgcacgtc gtgaactgtc ccggcgggac tgcgttcggg ttcgggttgg
     1021 gctcgcagtt agcgtcctgg aaggtgaaca ggatgccctg gttggccacg tcgtcgaagt
     1081 ctatgcggac gccgccgctc tggtcggtcc tcactgtccc cgtcagcgtc gccgtgaaga
     1141 cctgcgaggc attgccgacg atgccctgcg gggcggtgaa cgtcaccctg agcgtgaagg
     1201 tgttcccgtt atagttagcc gggacggtcg cgtcgaggaa gaagctaccg aggttgtcga
     1261 ccgactgtgt cccctggggc gtgggggctc cgccgaaggc gaggaagccg ctggcggtcg
     1321 tgccgctaaa ggtcgaattg gtgtagaaga ggccgagcag cgagttctgc tgcgtggcgt
     1381 tagtggcagg cgggttgcac ggcacgttcg ggtcggtgct gaagcaaccg ttcgtgtagc
     1441 cggcgacaaa aacctcgtcg gccttcgccg cgctgggggc gagtgctagg aaggcgatag
     1501 ccgcgaggcc gagggtgaac ggccgagcca gcgccctgat gcggttgagc atgatttact
     1561 tcctccgtcg ttccttttgc gagagcctgt tttgttaagc actcagccaa ctatccgttt
     1621 gaccgcttcc gggcgggagc ggggcaagct cgcagccggc gggtaatcga gcgaagggca
     1681 aaccgcacct tgacgccgtc gctcagaagg aagaacagtg cgtaaagcct gaatgaccgt
     1741 cggccaacag gggcaaactg gcggccggag gcgtcttcaa acctactaga ctctggtaag
     1801 cctaagtaaa cacctaattc ttcggcgatt tcagaaaagt ggaagggaat ttacccgctt
     1861 ccagaaaatt tgtaaagctt tattttggag gcgtaaaagc ataggagggg gccgtcgtga
     1921 ccccctccta tgctcgcttc cgggcgattt gccgcaggcg aagatgattc gagtttcgct
     1981 tgtgccccgc taaattattc cttagtggcc ccgcggcggc ggcgtgcgcg cgcggccagg
     2041 ccggccaggc cggtgccgaa cagtatcatc gtcatcggct cggggatggg gttagccctc
     2101 gccacgtcgc tgtcgccgtt gttgacatcc tggaagcggg cgaaaattgc ctgcgcta
//
LOCUS       DASPKR010000139         2679 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_146980, whole genome shotgun sequence.
ACCESSION   DASPKR010000139 DASPKR010000000
VERSION     DASPKR010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146980"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..778
                     /locus_tag="VD968_03955"
     CDS             <1..778
                     /locus_tag="VD968_03955"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE13578.1"
                     /translation="RIGAGGGGGGGQQQQGITPDAVSARDRRVGEIRRMLRDAEAYGR
                     AQDAYARDPRSTPRPDTDLRLAALVPYVRGERPVILRADRERDIRGAVRFAEEMKLRA
                     VILGGSDAWKAAQFLKEKNVPVILDSILNLPLREDDPYDTLYENAAKLQAAGVRFCIS
                     AGDSGAHVRDLPFHAGMAAAFGLPKAEALKAVTLYPAQIMGVADRLGSIEQGKLANLV
                     VTDGDLLEARTNVRHVFIAGRQIPLVSRHTMLYEQFKDRK"
     gene            1018..2052
                     /locus_tag="VD968_03960"
     CDS             1018..2052
                     /locus_tag="VD968_03960"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HYE13579.1"
                     /translation="MKISATLRTSVAALALALALAPAALAQEGSAQHTPTANTSVPSG
                     QKTKLKGFVVSRGSDGFVVQDYNGARTHVVLTDRTSVKTKGGFFGGGTNYAATAITRG
                     LNLEVEGRGDASGNLVAEKIRFGDSDLRAARTLEANVVPVEGRVGEAEGRLGAAEQNA
                     QRMSGQVDELAAISNAARGGAVAAQEAADRAVEGVRVANDRIGSLDDYTPQQSITVNF
                     KNRSAVLTPEAKQTLDQVAEYAKGAKGYLIEVTGYAYEWRDKATNRRVSEQRAESIVR
                     YLVETHNIPVRRILTPFGYGNLNPVAENTTRDGRAQNRRAEVRVLVNRGLAAPGYDAN
                     QSKVSAATPE"
     gene            2163..>2679
                     /locus_tag="VD968_03965"
     CDS             2163..>2679
                     /locus_tag="VD968_03965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13580.1"
                     /translation="MPNLSLEKQLERLEELKRPAGAGGRARLRSLLSGLARRRFDDAP
                     SLIRFHEALLFLRAYPQSPSLLRQTERLLAAFKRRVDRLRDSEDFYEFAEPRVSGIAG
                     TYFSAIFGYDITRWLAARYPSRVEIEWEGYESAAQLAAVLPRFLPLMEENAYVEYSLP
                     YREWLRAAKGRE"
BASE COUNT          487 a          947 c          857 g          388 t
ORIGIN      
        1 ccgcatcggc gccgggggcg ggggcggagg cggccagcag cagcagggca tcacgcccga
       61 cgccgtaagc gcccgcgacc ggcgcgtcgg cgagatacgc cgcatgctcc gcgacgccga
      121 agcctacggc cgcgcgcagg acgcatacgc gcgcgaccct cgctcgacgc cgcggcccga
      181 cacagacctt cggctcgccg ccctcgtccc gtacgtgcgc ggcgagcgcc ccgtcatact
      241 gcgcgccgac cgcgagcgcg atatacgagg ggccgtgcgc ttcgccgaag agatgaagct
      301 cagggccgtc atactcggcg gcagcgacgc gtggaaggcg gcgcagttcc tgaaggagaa
      361 gaacgtcccc gtcatactcg acagcatcct gaacctgccg ctgcgcgagg acgaccccta
      421 cgacacgctc tacgagaacg ccgcgaagtt gcaggccgcc ggagtgcgct tctgcatctc
      481 ggccggcgac tcgggtgcgc acgtccgcga cctgcccttc cacgccggca tggccgcggc
      541 cttcggcctg ccgaaggcgg aggcgctcaa ggccgtcacg ctctacccgg cgcagataat
      601 gggagtggcc gaccgtcttg gctcaatcga gcagggcaag ctcgccaacc ttgtcgtcac
      661 cgacggcgac ctcctcgagg cccgcaccaa cgtccgtcac gtcttcatcg ccggccggca
      721 gataccgcta gtcagccgcc acacgatgct ttacgagcag ttcaaggaca ggaagtaaga
      781 gaaggcggaa ggcagtcaga acgctcaggg cgtcttggct gccttctgcc tactgttttt
      841 ttgcaacagg ctcgcaaggt aatcgcaacc aacgcggcgc ggctttgcct gtatcgtccc
      901 cggaaagaaa atcactgccc cgacaaatgt cttaaaaggc acctcgctta agacgccgct
      961 tgtctcaagg tcgcagtgaa tccgaatcac atctgtggga agaaagggac gattaagatg
     1021 aagatttccg cgactctaag aacctcggta gcggcgctcg cgctggctct cgcgctcgcg
     1081 cccgctgcgc ttgcgcaaga gggctccgcg cagcacacgc cgactgccaa cacctcggtg
     1141 ccttcgggcc agaagacgaa gctcaagggc ttcgtcgtca gccgcggctc ggacggcttc
     1201 gtcgtgcagg actacaacgg cgcgcgcacg cacgtcgtcc ttactgaccg cacgagcgtc
     1261 aagactaagg gcggcttctt cggcggcggc accaactacg ccgccaccgc catcacgcgc
     1321 ggcctcaacc tcgaggtcga ggggcgcggc gacgcctccg gcaacctcgt cgccgagaag
     1381 atacgcttcg gcgacagcga cctccgggcc gcgcgcacgc tcgaagccaa cgtcgtcccc
     1441 gtcgaggggc gcgtgggcga ggccgagggg cgtctgggcg ctgccgagca gaacgcccag
     1501 cgcatgtcgg ggcaggttga cgagttggcc gccatctcga acgccgcgcg cggcggggcc
     1561 gtggccgctc aggaggctgc cgaccgcgcc gtcgagggtg tgagggtcgc caacgaccgc
     1621 ataggctcgc tcgacgacta cacgccgcag cagagcatca ccgtcaactt caagaaccgc
     1681 agcgccgtgc tcacgcccga ggccaagcag acgctcgacc aggtggccga gtacgcgaag
     1741 ggcgcgaagg gctatctcat cgaagtcacg ggctacgcat acgagtggcg cgacaaggcg
     1801 acgaaccgcc gcgtgagcga gcagcgcgcc gaatcaatcg tccgctacct cgtcgagacg
     1861 cacaacattc ccgtccggcg gatactcacg cccttcggct acggcaacct gaaccccgtc
     1921 gccgagaaca ccacccgcga cggccgcgca cagaaccgcc gcgccgaagt ccgcgtgctc
     1981 gtcaaccgcg gcctcgccgc gcccggctac gacgcgaacc agagcaaggt ttcggcagcg
     2041 acgccggaat aaaaccgaag acgactgaag tgacgaaggg ggccgggccg cttatcgggc
     2101 ggcccggccc cttctccgtg gttgttgtag agcccgcccc gtttcattta agctgccggc
     2161 gcgtgccgaa cctttctctc gaaaagcagc tcgaacgcct cgaagaactt aagcgccccg
     2221 ctggcgccgg cgggcgtgcg cgcttgagga gcctgctgtc cgggctcgcg cgccgccggt
     2281 tcgacgacgc gccgtctctc atacgcttcc acgaagcgct cctcttcctg cgcgcctacc
     2341 cgcagagccc gtcactgctc aggcagactg aaaggctgct cgccgcgttc aagcgccgcg
     2401 tggacaggct gcgcgactcg gaggacttct atgagttcgc cgagccgcgc gtctccggca
     2461 tcgccggcac ctacttctcc gcaatcttcg gctacgacat aacgcgctgg ctcgccgccc
     2521 gctacccttc gcgcgtcgag attgaatggg aaggctacga gtctgcggcg cagctcgcgg
     2581 ccgtgctgcc tcgcttcctg ccgctcatgg aggagaacgc atacgtcgaa tattcgctcc
     2641 cgtaccggga gtggctgcgc gcggcgaagg ggcgcgagc
//
LOCUS       DASPKR010000140         5322 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_147236, whole genome shotgun sequence.
ACCESSION   DASPKR010000140 DASPKR010000000
VERSION     DASPKR010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5322)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5322
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147236"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1503)
                     /locus_tag="VD968_03970"
     CDS             complement(<1..1503)
                     /locus_tag="VD968_03970"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HYE13581.1"
                     /translation="MRKVLAAAVLACLAAGRAPTAVEAKGMEADLVIVNAEVRTMDAA
                     RPQAEAVAVFGNRIAAVGTSAEVRRLAGARTRVVDARGALVLPGFNDSHVHFLSGGFQ
                     LSSVDLRDASTPQEFAERIRRFAERLPEGRWVTGGDWDHERWPGAPLPTKELIDAFTA
                     RTPVFVNRLDGHMALANSLALKLAGVTRETKDPPGGLIVRDPATGEPTGVLKDAAMSF
                     VWSKIPAPTFEEKLAAARAATEHAARLGVTSVQDMSAGDDVGVYQTLLERGELKTRIY
                     AVAPLPRWERLKAVGLRRAFGGAMLRVGGFKGFSDGSLGSTTALFFEPYLDAPGTSGL
                     PGDEMFPEGAMLARVEGADAAGLQVMIHAIGDRANDQILSIFEQVARKHGERDRRFRI
                     EHAQHLRKEEIAEFARQKVIASMQPYHAIDDGRWAEKRIGPERAKGTYAFRSLLDAGA
                     ALAFGSDWTVAPLDPLLGIYAAVTRRTLDGKNPSGWVPEQKITVEEAVRAY"
     gene            1624..3060
                     /locus_tag="VD968_03975"
     CDS             1624..3060
                     /locus_tag="VD968_03975"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HYE13582.1"
                     /translation="MDKLITQLTDLLGAGRVKHERDELLAYECDGLPHYKAMPRAVVF
                     PETTKEVSAVMRLLASERVAVVPRGAGTGLSGGALCDGGVCVELARMRRVLKVDAENR
                     LAVVETGLVNAHVSRAVARHGLYYAPDPSSQATCTIGGNIAENAGGIHCLKYGTTVDH
                     VLGARVVLYGGEVVELGGAGGGAAGYDLMGVFVGSEGTFGVATEATLRLLPVALSVRT
                     LLADFTDIGAASRAVSSIIAAGVVPAALEMVDNATIRAVEASVFAAGMPLDAEAALLV
                     ELDGLEAGIDAEVERVRAICRESGAREVRLAADEPERKRLWAARKGAFGAMGRLAPDV
                     MIQDAVVPRSRLPEVLASLVRIGAEHRLRLANVFHAGDGNLHPFISFDSRDADEARRV
                     TEAGREMMLTCVRAGGTITGEHGVGLDKRGYLPLIFTDDDMRAMLAVRAAFDPSGLCN
                     PGKIIPVLKGCGEARAVAPAPATCGRIK"
     gene            3144..4400
                     /locus_tag="VD968_03980"
     CDS             3144..4400
                     /locus_tag="VD968_03980"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HYE13583.1"
                     /translation="MLAGVVGDEHVATGEVAGGVRAVVSPASAEEACEVLRAARAEGF
                     GVVPAGAGSWLDAGNPTGSPVVILKTERMTRIIEHEPADLVATVQAGVTLSDFNRAAG
                     RAGQWLPLDPPGAGAATLGGVAATGLAGAQALGYGPPRSHVLGMRVALADGTLVRAGG
                     RVVKNVAGYDLCKLFVGSYGTLAVILEVTFKLRPRPASEATIVARADDWWKLLGAARA
                     VCSSQLLPAAAELLSPRMAEALGLHDAAGGAALLVRFAGTAEAVAYQLGRAGEIVKEH
                     GGTAVETLANDSSLWAGLAAVSAGDCSGVVVWRAGVSPSGLGRFIPEAEKLIGTAETL
                     WHAGAGDGRLRVLGPAPDAAALSSLREVARQAGGALVIERAPEGLKRSLDAWGLAGGA
                     ARLMRRVKEQLDPSGLLSPGRFNLDG"
     gene            4393..>5322
                     /locus_tag="VD968_03985"
     CDS             4393..>5322
                     /locus_tag="VD968_03985"
                     /inference="COORDINATES: protein motif:HMM:NF014774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heterodisulfide reductase-related iron-sulfur
                     binding cluster"
                     /protein_id="HYE13584.1"
                     /translation="MAEAQTKLAGALSAEARKILACVHCGLCLEACPTYVQTGDENDG
                     PRGRIYLMRAVEEGRLAAESRSFERHIDRCLGCRACESACPAGVEYGRLLEAARADIS
                     AAGRRRGWTSRLLRLVLRHVWLRPARLRFAFRLARLTRDSKLPRAALALGLAKILPAR
                     LGLALALLDASAPARKEPKGKVSPALKGSEGEQVLLFEGCVTEGLFARVNRATARVLS
                     ANGFRVSAPAGQVCCGALHAHAGDLEGARELARRNLEAFGGAGRAAVVTNAGGCGAML
                     ASYAHLFEHDEEHAALARDFSERVRDVSQQLDTA"
BASE COUNT          716 a         1819 c         1976 g          811 t
ORIGIN      
        1 gtacgcgcgc acggcctcct cgaccgtaat cttctgctcg ggaacccagc ccgacgggtt
       61 cttgccgtcg agcgtgcggc gcgtgacggc cgcgtagatg ccgagaagtg ggtcgagcgg
      121 cgccacagtc cagtcggagc cgaaggcgag cgcggcgccc gcgtcgagga gcgagcggaa
      181 ggcgtaagtg cctttggcgc gctccgggcc tatgcgcttc tcggcccagc ggccgtcgtc
      241 tatggcgtgg tagggctgca tcgaggcgat gaccttctgg cgggcgaact cggctatctc
      301 ttccttgcgg aggtgctgcg catgctcgat gcggaagcgg cggtcgcgct cgccgtgctt
      361 gcgcgcgacc tgctcgaaga tggaaagaat ctggtcgttg gcgcggtcgc cgatggcgtg
      421 aatcatcacc tgaagcccgg ccgcgtcggc gccctcgact cgggcgagca tggcgccctc
      481 ggggaacatc tcgtcgccgg gcagtcccga ggtgcccggc gcgtcgaggt agggctcgaa
      541 gaagagggcc gtcgtggagc cgaggctgcc gtcggagaag cccttgaagc cgccgaccct
      601 gagcatcgcg cccccgaagg cgcggcggag gcctaccgct ttcaggcgct cccaccgcgg
      661 caggggcgcg acggcgtaga tgcgcgtctt tagctcgccg cgctcaagaa gcgtttgata
      721 gacgccaacg tcgtcgccgg ccgacatgtc ctgcacgctc gtcacgccga ggcgcgcggc
      781 gtgctctgtc gcggcgcgcg cggcggcgag cttttcttcg aacgtgggcg cggggatttt
      841 cgaccagacg aagctcatcg cggcgtcctt gaggacgccc gtgggctcgc ccgtagccgg
      901 gtcgcggacg atgaggccgc cgggcgggtc tttcgtctcg cgagtgacgc cggcgagctt
      961 gagggcgagg ctgttggcga gcgccatgtg gccgtcgagg cggttgacga agacgggcgt
     1021 cctcgccgtg aaggcgtcaa tcagctcctt cgtcggcagc ggcgcgcccg gccagcgctc
     1081 gtgatcccag tcgccgcccg tcacccagcg cccctcgggc aggcgctcgg caaagcgccg
     1141 tatcctctct gcgaactcct gcggcgtcga ggcgtcgcgc aaatcaacgc tcgagagctg
     1201 gaagccgccc gacaggaagt gcacgtgcga gtcgttgaag ccgggcagca cgagcgcgcc
     1261 gcgggcgtca acgacgcgcg tgcgcgcgcc ggccagccgc cttacttctg cgctcgtgcc
     1321 gacggcggcg atgcggttcc cgaagacggc cacggcctcg gcctgcggcc ttgccgcgtc
     1381 catcgtgcgc acttcggcgt tcacgattac gaggtctgct tccatccctt tcgcttcgac
     1441 ggcggtgggc gcgcggcccg ccgcgaggca cgccagcacg gccgcggcca gaacttttct
     1501 catcctcatc ggtgcggtgc gtcgcccgcg cggcgggcct gaagttgttt gaattgcggg
     1561 aacgacgggc gcgtagtgta tcattgcggc gccgccttcc ggtaggattt tccgaagccc
     1621 gtcgtggaca agctaatcac acaactgacg gatttgctcg gcgccggccg cgtcaagcac
     1681 gagcgcgacg agctgctcgc ctacgagtgc gacggcctgc cgcactacaa ggccatgccg
     1741 cgcgccgtcg tcttccctga gacgaccaaa gaggtctcgg ccgtgatgcg cctgctcgcg
     1801 agcgagcgcg tcgcggtcgt cccgcgcggc gcggggacgg gcctctctgg cggcgcgctg
     1861 tgcgacggcg gcgtctgcgt ggagctcgcc cggatgcggc gggtgctgaa ggttgacgcg
     1921 gagaaccggc ttgccgtcgt cgagactggt cttgtcaacg cccacgtctc gcgcgccgtc
     1981 gcgcgccacg gcctgtacta cgcgcccgac ccttcgagcc aggcgacctg caccatcggc
     2041 ggcaacatcg ccgagaacgc gggcggcata cactgcctga agtacgggac gaccgttgac
     2101 cacgtgctcg gcgcgcgcgt cgtgctctac ggcggggagg tcgtcgagct cggcggcgcg
     2161 ggcggcgggg cggcgggcta cgacctcatg ggcgtcttcg tcggctccga ggggactttc
     2221 ggcgtggcga cggaggcgac gctgcggctc ctgcccgtcg cgctttcggt gcggactctg
     2281 ctcgcggact tcaccgacat cggcgcggcg agccgcgcgg tctcttccat catcgcggcg
     2341 ggcgtcgtcc ccgcggcgct cgagatggtt gacaacgcga ctatccgcgc cgtcgaggcg
     2401 agcgtgttcg cggccgggat gcccctggac gccgaggcgg cgctgctcgt cgaactggac
     2461 gggctggaag ccgggattga cgcggaggtc gagcgcgtgc gcgcaatctg ccgcgagagc
     2521 ggagcgcgag aggtcaggct cgcggccgac gagcccgaga ggaagcggct ctgggccgcg
     2581 cgcaagggag cgttcggcgc gatgggccgg ctcgcgcccg acgtgatgat tcaggacgcg
     2641 gtcgtgccgc gctcgcggct gcccgaagtc ctcgcctcgc tcgtccgcat aggcgccgag
     2701 caccgcctgc gcctcgcaaa cgtcttccac gcgggcgacg ggaatctaca ccccttcatc
     2761 tccttcgact cgcgcgacgc tgacgaggcg cggcgcgtca cggaggccgg ccgcgagatg
     2821 atgcttacgt gcgtgcgcgc gggcgggacg atcacgggcg agcacggcgt aggcttagac
     2881 aagcggggct acctgccgct catcttcacg gacgacgaca tgcgagcgat gctcgccgtg
     2941 cgcgccgcgt tcgacccgtc cgggctttgc aaccccggca agataatccc cgtgctcaag
     3001 ggctgcggcg aggcgcgcgc cgtcgccccg gcgccggcaa cgtgcggcag aataaagtag
     3061 agccagtggc ggcgcccccc tcgccggcgc gtgccgttcg ggtttcgact gcggcgacac
     3121 gcgcgcccct tccgttaaag aagttgctgg ccggcgtcgt cggtgatgag cacgtcgcga
     3181 cgggcgaggt ggcgggcggc gtgcgcgccg tagtctcgcc tgcttcggcc gaggaggcgt
     3241 gtgaagtact gagggccgcg cgcgccgaag ggttcggagt cgtgccggcc ggcgcaggct
     3301 catggctcga cgcggggaac ccgaccggca gccccgtcgt catcttaaag accgaacgga
     3361 tgacgagaat tatcgagcac gagccagccg atctcgtggc gacggtgcag gcgggcgtga
     3421 cattgtcgga cttcaaccgt gcggcggggc gggcgggtca gtggctccct ctcgacccgc
     3481 ccggcgcggg cgcggcgact ttgggaggcg ttgccgcgac gggcctggcc ggggcgcagg
     3541 cgctcggcta cggcccgcct cgctcgcacg tgctaggcat gcgagtggcg ctcgccgacg
     3601 ggactctggt gcgagcgggc ggccgcgtcg tcaagaacgt cgccggctac gacctctgta
     3661 agctgttcgt cggaagctat ggcacgctcg ccgtgattct cgaagtgacc ttcaagctca
     3721 gaccccgccc cgcgagcgag gcgactatag tggcgcgcgc ggatgactgg tggaagctac
     3781 tcggggccgc gcgggccgtc tgttcgtccc agcttctgcc cgccgcggcc gaactgctct
     3841 cccctcgcat ggccgaagct ctcgggcttc acgacgccgc gggcggggcg gcgctgctcg
     3901 tgcgcttcgc cggcacggcg gaggcagtcg cttaccaact cgggcgcgcg ggcgaaattg
     3961 tgaaggagca cggcggcaca gccgtcgaaa cgctggcaaa cgattcgtcg ctctgggcgg
     4021 ggctagcggc cgtgtcggcg ggtgactgta gcggcgtcgt agtctggcgc gcgggcgtgt
     4081 cgccgtcagg gttgggccgt ttcatcccgg aggcggagaa gctcatcggg acggccgaaa
     4141 cgctctggca cgcgggggcg ggcgacggcc gtctgcgcgt tctcggcccc gcgcccgacg
     4201 cggcggcgct ctcgtctctg cgtgaagtgg cgcggcaagc gggcggcgct ctcgtcatcg
     4261 agcgcgcgcc cgaggggttg aagcgctcgc tcgacgcgtg gggcctcgcg ggcggcgccg
     4321 ccaggctgat gcggcgcgtg aaggagcagc tagacccgtc gggccttctt tcgcccggcc
     4381 ggttcaatct cgatggctga agcgcagaca aaactcgcgg gcgcgctctc ggccgaggcg
     4441 cggaagattc tggcttgcgt ccactgcggg ctctgcctcg aagcatgccc gacctacgtg
     4501 cagaccggcg acgagaacga cgggccgcgc ggccgcatat acctcatgcg cgcggtcgag
     4561 gaggggcggc tcgccgccga gtcgcgctcg ttcgagcgcc acatagaccg ctgcctcggg
     4621 tgccgcgcct gcgagagcgc ctgcccggcc ggcgtagagt acggccggct gctcgaagcc
     4681 gcgcgcgcgg acatttcggc cgcgggccgg cggcgcggct ggacttcgag gctcctgcgc
     4741 ctcgtgctac gccacgtctg gctgcggccg gcgcggctgc gcttcgcttt taggctggcg
     4801 cggctcacgc gcgactcgaa gctgccgcgc gcggcgctcg ccctcgggct cgctaaaatt
     4861 ctcccggccc ggctcgggct cgcgctcgcc ctgctcgacg cttccgcgcc cgcgcgcaaa
     4921 gagccgaagg ggaaagtcag ccccgcactt aaaggcagcg agggcgagca ggtcttgctc
     4981 ttcgagggct gcgtgaccga gggtttgttc gcgcgcgtca accgcgcgac agcgcgcgtg
     5041 ctctcggcga acggcttccg cgtgagcgcg cccgcggggc aggtctgctg cggcgcgctg
     5101 cacgcgcacg ccggagacct cgaaggcgcg cgcgagctcg cccgccgcaa cctcgaagcc
     5161 ttcggcggcg cgggccgcgc tgcggtggtg acgaacgcgg gcggctgcgg cgccatgctc
     5221 gcctcctacg cgcacctgtt cgagcacgac gaggagcacg ccgcgctcgc gcgcgacttc
     5281 agtgagcgcg tgcgcgacgt gagccagcag ctcgacaccg cc
//
LOCUS       DASPKR010000141         2327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1312034, whole genome shotgun sequence.
ACCESSION   DASPKR010000141 DASPKR010000000
VERSION     DASPKR010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1312034"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..520)
                     /gene="tadA"
                     /locus_tag="VD968_03990"
     CDS             complement(<1..520)
                     /gene="tadA"
                     /locus_tag="VD968_03990"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: protein motif:HMM:NF008113.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HYE13585.1"
                     /translation="MQEREVFEGGPEGAAGPDERWMREALSAAREAAARGEVPVGACV
                     VSASGELLAAAGNRTRTDCDPTAHAEVVALREAARRLGNYRLTGAVAYSTVEPCAMCA
                     GALVQARVARLVYGAKDERAGAVESVFRVCDTGSLNHRMELTPGVLEDECRALMREFF
                     RARRRTAAAPRDA"
     gene            721..1761
                     /locus_tag="VD968_03995"
     CDS             721..1761
                     /locus_tag="VD968_03995"
                     /inference="COORDINATES: protein motif:HMM:NF021539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2270 domain-containing protein"
                     /protein_id="HYE13586.1"
                     /translation="MKTDRPSRVTATLSGAERVTGSQPQQRPAPANEPETASIHQTVS
                     PEQVTPAARATAAAPRKATTAEFSTAMVHFYRGEVSRANTWRNRLDTTTNWAVLTTGA
                     TLSFAFSSPINPHFVILINTVLVFFFLFMEARRYRYYEIWSSRVRMLETGFFTQILAP
                     DQQVDDAWAQMLVDDLKTPRFTISEWEAVGRRLRRNYLWIFALLAASWNLKVYMHPVP
                     AYDFNAFVDRATIGVIPGEIVFMVGVFINAGLLVFALATVRLQQATGEVLTERDFHPI
                     KSMTDWTRAAAERRRTATVRRAKKARERARSPRPAGSVTGEWRRSDIHRSQPPDGDIH
                     RTQFPHRDRVIK"
     gene            1848..>2327
                     /locus_tag="VD968_04000"
     CDS             1848..>2327
                     /locus_tag="VD968_04000"
                     /inference="COORDINATES: protein motif:HMM:NF012447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid lyase"
                     /protein_id="HYE13587.1"
                     /translation="MIELYGQALTLGEVARVARGGGGVSLSAAARERMEASRRTVERI
                     VAESRVVYGVNTGFGKLSDVTVGADELRELQVNLVRSHACGVGPPLPEDETRAMMLLR
                     TNVLAVGLSGARPVVAETLLAMLERGVHPVIPEKGSVGASGDLAPLAHLALCCMGEGE
                     "
BASE COUNT          359 a          840 c          778 g          350 t
ORIGIN      
        1 cggcgtcacg cggcgctgcg gccgtgcgtc ggcgggcgcg gaagaactcc cgcatgagcg
       61 cgcggcactc atcttcgagc acgcccggcg tcaactccat cctgtgattc aaagagccgg
      121 tgtcgcagac gcggaagaca gactcgaccg cgccggcccg ctcgtccttt gcgccgtaaa
      181 ccagccgcgc gaccctcgcc tgcacgagcg cgcccgcgca catagcgcag ggctctacgg
      241 tcgagtaggc gacggcgccc gtcaggcggt agttgccgag gcggcgcgcc gcctctctta
      301 aagccaccac ctcggcgtgg gccgtcgggt cgcagtccgt gcgggtgcgg ttgcccgcgg
      361 cggctaacag ctcgcccgag gcgctcacga cgcacgcgcc gacggggact tcgccgcgcg
      421 cggccgcctc ccgcgcggcg ctgagcgcct cccgcatcca acgctcgtcc ggcccggccg
      481 cgccttcggg gccgccctca aagacctctc gctcctgcat ggtcacgcgc gcccgcggcg
      541 gtgaggccgc gggcaaaaag tgactatagg gggccgcgcg cgcgcgtgtc aagcagggcc
      601 gtttcgggcc gggcgacgcg cccgcgctca cgttttttgt cgccgcgcgc cgggcgcgtg
      661 ttatcatcgg cgacgtgccg cctccccggc cgcgagcgcg agggcctcga agattcgacg
      721 atgaagacag accgccccag cagagttacc gccacgctgt ccggcgcgga gagggtgacg
      781 ggaagccagc cgcagcagcg ccccgccccc gccaacgagc ccgaaaccgc atccatacac
      841 cagacggtct cgcccgagca ggtcacgccc gccgcgcgcg cgacggccgc cgccccgcgc
      901 aaggccacca ccgccgagtt cagcacggcg atggttcact tctaccgcgg cgaggtctcg
      961 cgcgccaaca cctggcgcaa ccggctcgac accactacta actgggccgt gctcacgacg
     1021 ggcgcgacgc tgtcgttcgc cttctcgtcc cccatcaacc cgcacttcgt catcctcatc
     1081 aacaccgtgc tcgtcttctt cttcctcttc atggaggcgc gccgataccg ctactacgag
     1141 atttggtcga gccgcgtcag gatgctagag accggcttct tcacgcagat actcgcgcct
     1201 gaccagcagg ttgacgacgc gtgggcgcag atgctcgttg acgatcttaa aaccccccgc
     1261 ttcaccatca gtgagtggga ggccgtcggc cggcggctgc ggcgcaacta cctatggatt
     1321 ttcgcgctgc tcgccgccag ctggaatttg aaggtctata tgcaccccgt cccggcctac
     1381 gacttcaacg ccttcgttga ccgcgcgaca atcggcgtca tccccggcga gatagtcttc
     1441 atggtcggcg tcttcattaa cgccggcctg ctagtcttcg cgctcgccac cgtccgcttg
     1501 cagcaggcga ccggcgaggt gctcacggag cgcgacttcc accccatcaa gagcatgaca
     1561 gactggacgc gcgcggcggc cgagcggcgc cgcactgcga cagtccgccg cgccaagaag
     1621 gcgcgcgagc gggcgcgctc gccgcgcccc gccggcagcg tcaccggcga gtggcgccgc
     1681 tcggacatac accgctcgca gccgcccgac ggcgacatac accgcacgca gttcccgcac
     1741 agggacagag tgattaaata gaggccagcg gctagagacc ggaggctagt aagaagaggc
     1801 gttttttaac tgtcctctag tctctagccg ctggcccctg actttttatg attgagttgt
     1861 acggacaggc gctgacgctg ggggaggtgg cgcgcgtggc gcgcgggggc gggggcgtgt
     1921 cgctctcggc cgcggcgcgc gagcgcatgg aggcttcgcg gcggactgtg gagcggatag
     1981 tcgcggagtc gcgcgtcgtt tacggagtca acaccggctt cgggaagctc tcggacgtga
     2041 ccgtgggcgc cgacgagctt cgtgagctac aggtcaacct cgtgcggagc cacgcgtgcg
     2101 gcgtcggccc accgctgccc gaggacgaga cgcgggcaat gatgctgctg cgcacgaacg
     2161 tcctcgccgt cggcctgagc ggcgcgcggc ccgtcgtggc cgagacgctg ctcgcgatgc
     2221 tcgagcgcgg cgtgcacccg gtcataccgg agaagggctc ggtcggcgcg agcggcgacc
     2281 ttgcgccgct cgcccacctc gcgctctgct gcatgggcga gggcgag
//
LOCUS       DASPKR010000142        14533 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1052846, whole genome shotgun sequence.
ACCESSION   DASPKR010000142 DASPKR010000000
VERSION     DASPKR010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 14533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14533)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14533
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1052846"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..354
                     /locus_tag="VD968_04005"
     CDS             <1..354
                     /locus_tag="VD968_04005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13588.1"
                     /translation="EEARPSEVVSGAHAVRNSTPAREMRTARTAPRPATMNASYGPRP
                     AAREEEITTDFIPLMQGAQGAGLDSGAVVRVELPRSALASLGLPVNAERAHERVKADV
                     VVGEDGTARAIRFVR"
     gene            414..1742
                     /locus_tag="VD968_04010"
     CDS             414..1742
                     /locus_tag="VD968_04010"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HYE13589.1"
                     /translation="MRQRKSLTAAALSLSLLSGGLTAFAQDRRPARGEQQRQSEAERK
                     ERVERELILTQHGGDFHIRVPGPAEPGAPPFGRDTFVYLSTEMSLPGKTVKGAPYSAE
                     AVTETVQTLADGNRIVRKNTAQVYRDGEGRTRREFTLNALGPWASQDDAPRTVSIVDP
                     VAGVSYSLDARTRTAHKVPLGPMRSLQAAPGGHAEVFSILRSGRGGDVKPVDMKGVKS
                     TLQGRVLSKAEAVNASGLKEREMVAVKIKVGASGSVESAEAVVGENAALRAAAVEAAR
                     KWSFKPGEAETGAILFKFDGRASAPGEIARVFEMSKEETANGAKATTVLAFDEPGVET
                     QQLGKQLVEGVEAEGTRTTRTIPAGEIGNEQPIQIVSERWYSPELQVVVMTRHSDPRM
                     GETTYKLTNVVRGEPSAPLFQVPSDYTVREAPAFGPRALRRSKVPAPDFQ"
     gene            complement(1850..2089)
                     /locus_tag="VD968_04015"
     CDS             complement(1850..2089)
                     /locus_tag="VD968_04015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13590.1"
                     /translation="MSEFKEARWAVMSERGREAAGLPYAEAAALVRELKSSGVSGLCV
                     ITDEAASRLPGAGKGNGRGGVTRKRRRASKKEGAA"
     gene            2245..4245
                     /locus_tag="VD968_04020"
     CDS             2245..4245
                     /locus_tag="VD968_04020"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HYE13591.1"
                     /translation="MKKLSLLFSLPLLLCGACATEQKPAATQNGAASQAGGGDQAFKS
                     LHDRYVVEFLRRNPTVNTYLGGAGLDPSLREADGRLRDHSAQALADEDRWLSETQKSF
                     EGVAPDSLSPARRIDREVALAQIRFLLHQHQQRRYQERAVDTYVSEPFRAIDWQLQGM
                     TKVGEGDKTYGTPEEWALAAKRVADIPRFLTVAQQQLEAGVKSGNTADHRMLRRDGIN
                     TSEANAKYFGEELPKLAAERVAPGPDRDQLLSQIRDAGRQAADAYRKFGDFVRTTFFD
                     TSAGAPGGLAPKQQFAADRFAMGAQEYDWAIKNNLRMETTSAQLYDGAMAIVEGTRKE
                     MMELARKVGEKRGMQLPEDGAVAVRAVFDELSKDYPKSDDEMVAWYRDTCFRIVDYGR
                     KTGVFDVPADYKLDVTVTPPPLLASIDGAAYYPAPPFKTSGVGRFYVTPTGNDEAALK
                     DNNRAALADLAVHEGFPGHDWHFKVMTQFKNDIAPVRWLTPGAVEDSSSMWQDSMASE
                     GWALYSEALMAEPAQGAPEGFYTPEERLYQLRGKLYRDLRVRIDTGIHTGRMSYDEAT
                     DLFSEVVDFLPGKCSDASRTEAKRASCESAERAIFRYSKWPTQAITYRLGKDQIYALR
                     ADASRLVGDKFSPKDFHLLFMKQGTIPVGYFREELLRELQKK"
     gene            complement(4299..5540)
                     /locus_tag="VD968_04025"
     CDS             complement(4299..5540)
                     /locus_tag="VD968_04025"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE13592.1"
                     /translation="MPKEILLMALDSIRAHKLRSFLTVFGIVVGVVVVIVVASLLTGV
                     RQSIIDVIAEYGTNNIYAFHLSTGFTSGPNLEEERTRKPLRHEDAEAIRRGAPAVEEV
                     ATVLLVAWWDSTIQYQGKNHRRGQVQGVTASYAAAANLNIGAGRFISESDDDNRRSVM
                     VIGLNIADALFPGKSPEEIVGIEVKLGGRPFEIIGVLEKRKAAIFGENEEDNLVFIPF
                     RTARQVSPGSEYILIIVRAREGHFREAMDQTEEILRRQRGVKFDQPNNFDLGTADKFI
                     NQFDSIMGMIGLFAIAVSSIGLMVGGIGVMNIMLVSVTERTQEIGVRKAVGARRRDIV
                     RQFLYEAMTLTFMGGVIGVLLAIAISKIIAFLFPSLPAAIPLWAVVAGLLVSVGVGLV
                     FGVWPAFKASRLDPIECLRYE"
     gene            complement(5584..6834)
                     /locus_tag="VD968_04030"
     CDS             complement(5584..6834)
                     /locus_tag="VD968_04030"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE13593.1"
                     /translation="MRTLYTFYADAAKIAVQSIFAHKLRAFLTLIGIIIGVASVVVVG
                     AAISGLNTYVMDKVTAVLGTNHFMIARIAHAGELSEEEWEKMNRRNKRLEVEDYEWVR
                     ANCAACAEVGAQYEWRVDLKHEGEELFGTEILGVTANMASIEEKTIAEGRFLLPQEVE
                     TAAMVVVLGHDVREKFFPAVDPVGRRLSVRGIPLEIVGVEEKRGSMLGQSLDNHAYIP
                     LTTFRKIFGVGGRQSIQIHGKAASREQFQRAIEDARLALRNKHKLKGNEEDDFGLVNT
                     GEVSNAVDALTGGIAAVVMPITFISLLVGGIVVMNIMLVSVTERTFEIGLRKALGATR
                     RQVLLQFLIESSFLTTLGGLIGIALAAAATSLIAGAFSITMTITPGYIVLSLAVSGGI
                     GMIAGIYPAFRASRLDPIVALARK"
     gene            7075..8391
                     /locus_tag="VD968_04035"
     CDS             7075..8391
                     /locus_tag="VD968_04035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13594.1"
                     /translation="MPAARPSARALALAALLASLLALPAPLPTPTRVAACPVVPPTPL
                     RMLYKKSALVVVAEAGETARELSAEPLYEGGPRMVTLKTTFHVSESLKGDPSETRPVV
                     NFWGGYAGMRVEGDYQKGDRALLFLEADEGRDGYTLADYRYGAKRLPEDDLKVYVQRI
                     RELSAILGTEKPDEAALLEWLVRCAEEKATRWEGAYELSATIVSTDEEEEEEEEQVSL
                     EEGGEGEEPAAEEGPAEDAAGEEAAAEETTEESPEAAQGEAPVEGSAENVTLARLGGL
                     GTDLEPGFASKLSDEQRERLYSALFKADEVGDGEIALLRLARDSGDARLVPFLVKHLQ
                     GMDAEPTYDAHPLILALAHALDDKEIKRLAKDYVSNAPYTEYVEEEEEAAAEGEEADY
                     EGEDEEEADSGEPKVKGVDRRREMLRAFLAAVDNKIQYDLAMQLSR"
     gene            complement(8404..9705)
                     /locus_tag="VD968_04040"
     CDS             complement(8404..9705)
                     /locus_tag="VD968_04040"
                     /inference="COORDINATES: protein motif:HMM:NF015722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HYE13595.1"
                     /translation="MDERAEQIAREMGDARAATLKLFDLVEREDDLRESPGFGYRPLL
                     WHLAHVGVFEAYWLLQKVGGEPPPDERYERIFDPIRTPREESKNLPARREMESYLSRV
                     RDGALRRLERFDFDSSDPLLRDGYVFQLVLEHERQHQETLAYLLQLLDPSKKSRPDDA
                     RDLQPARPSSTSGGMIDVPAGTFEMGSVWPRSFAYDNELPARAVSLPAFRIARLPVTN
                     AEYARFVAEGGYERREFWGEEGWACREREGWRHPLHWRCEGREGWRVRGMFGEGALEG
                     EQPVTGVSWHEAEAFARFSKKRLPTEEEWERAASWDGRRKRRFAWGDEPPSPELCNSG
                     GRLWGTAEVGSFPAGASVEGCLDMTGNVWEWTSTPFEGFPGFEPFPYPEYSETWFDGD
                     HRVLKGGSWATSDSVLRTSFRNFFRRPFRIAFAGIRLAEGA"
     gene            9821..10840
                     /gene="egtD"
                     /locus_tag="VD968_04045"
     CDS             9821..10840
                     /gene="egtD"
                     /locus_tag="VD968_04045"
                     /EC_number="2.1.1.44"
                     /inference="COORDINATES: protein motif:HMM:NF021530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030745 - dimethylhistidine
                     N-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HYE13596.1"
                     /translation="MPSPRGELTSERLRLVSLGGDRTREEFAEDVRRGLTAGRKSLPP
                     KYFYDELGSRLFEAICLLPEYYLTRAEAEIFERHSEEIVEAATDGSRLTLVEMGSGSA
                     SKTRRIIEAVLRRQPRLLYVPVDISTAALEESAHALLGDYPALSVAAYAGDYDAALPR
                     LGENFGDGARALVLFLGSNIGNFDRDGARAFLRKLRGVLRAGDRLLLGADLKKDPATL
                     EAAYDDPLGVTAAFNLNLLARINRELGADFDPRSFRHVALYDAGSGRVEMHLESLRGQ
                     EVEVRALGLGVRFAAGERLHTENSYKYDAGELSALAAETGFRLRRTWLDSAGRFSSNL
                     LAAED"
     gene            10865..12241
                     /locus_tag="VD968_04050"
     CDS             10865..12241
                     /locus_tag="VD968_04050"
                     /inference="COORDINATES: protein motif:HMM:NF016032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0042398 - cellular modified amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-cysteine ligase family protein"
                     /protein_id="HYE13597.1"
                     /translation="MAQHSRVAKGGEGFPLLTDPVGADSAPLFVENLLRGEKPPAEWL
                     CGIEFELFGYDRSRGFERINAEQVQKVLAGFAPSSNDLVYEGGALVEVSDGHMNRLTV
                     EPGGQIEFSGAPKRSLAEVEREVRRHLARLAEIAESNRLCFVAVGFDPLRSLEDQRWF
                     PKQRYDVMRPYLATRGARAWDMMTRTCSVQCNLDYGAPDDLRKKFLAGNRLAPVVTAI
                     FANSPFERGRPSGYKSTRAAAWLATDPDRCGPAPPASSDDFAPAEYVAYALDVPMIFA
                     QRGGRYVGSVAGTRFRDFAAGGRAGLSPVFGDWADHLTTVFTDARLKQHIELRSADCN
                     DLETSLAVQALWKGLLYDSAALDEALRLAPRLDRADAMALRESVAREGLAARRAGVDV
                     LAIARELVALAAEGLGRTAPEEARYLDVLTERVARDGVCPADILLRNWEGSWAGSVER
                     ALEHLRVA"
     gene            12249..13061
                     /locus_tag="VD968_04055"
     CDS             12249..13061
                     /locus_tag="VD968_04055"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYE13598.1"
                     /translation="MRDETEGEARHVDDGAAVVFRGVTYAPIPDGAPVISDLDLEIRR
                     GETLVLLGESGCGKTTTLRLVNRLLVPTSGAVLVEGRDTREWDEIALRRRTGYVIQDA
                     GLFPHFTVARNVGLVPSLEGWDAGRTAARVEELLRLVGLEPEKFADRYPSELSGGQRQ
                     RVGVARALAADPPLLLMDEPFGALDPLTRASLQREFAELQRRLGKTVVFVTHDVREAL
                     LLGTRVALMSAGRIVLLGTPEEFLRSDEPHARAYRATIEAPAGARPAEGGAP"
     gene            13058..>14533
                     /locus_tag="VD968_04060"
     CDS             13058..>14533
                     /locus_tag="VD968_04060"
                     /inference="COORDINATES: protein motif:HMM:NF015995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease/substrate-binding
                     protein"
                     /protein_id="HYE13599.1"
                     /translation="MSPFEFIARNWREVLALTGEHLLLVAVSTAIAVAVGLPLGLLLT
                     RRPRFKRPVLAVANVLQTVPSLALFGLLIPLPLVGGIGARTAAVALVLYALLPVIRNT
                     VTGVEGVDRGVREAAVAMGMTPSQILRQVELPLAAPVILAGVRVATVICVGVATIAAA
                     IGAGGLGMYIFRGLRQYDNNLLLAGAIPAALLALAADAGLGLLESRMDVRRRRRRDGG
                     SAAARRVVLAAVVLAVMAFGAYALLRRGGGGGGERAVVGSKDFTESIILAEMLAQMLE
                     ERGVRVERRFELGGNLAHDSLVSGRIDFYPEYTGTSFTAILKHAPLTDPRAVYEQVRR
                     EYAERFNVEASAPLGFSNDFAILVRGDDARRLGIKTVSEAAAHAPKWRAGFGQDFMSR
                     ADGYEGFARAYGLRFAARPREMDLSLSYRALAEREVDVIAGNSTDGMIATLGLAQLED
                     DRHYFPPYEAVLVVRRDALERLPRAREVLQRLAGSISTEEMR"
BASE COUNT         2384 a         5088 c         4870 g         2191 t
ORIGIN      
        1 gaagaggctc ggccgagcga agtagtcagc ggcgcgcatg ccgtcaggaa ctcgacgccc
       61 gcgcgcgaga tgaggactgc gcgcacggcc ccgcggcccg ccacgatgaa cgcgagctac
      121 ggcccccggc cggcggcgcg cgaggaagag atcacgaccg acttcatacc gctcatgcag
      181 ggcgcgcaag gggcggggct cgactcaggc gcggtcgtcc gggtcgagct gccacgctcg
      241 gcgctcgcct ccctgggcct gcccgtcaac gccgagcgcg cgcacgagcg cgtcaaggcc
      301 gacgtggtcg tcggcgagga cggcacggcc cgagccatac gcttcgtccg ctgaaccgac
      361 ggccggaatt ttgcgaccag cgggaatact ttactgagga aggaagacga gtgatgagac
      421 aacggaaatc tttaacggcg gcggcgctct cgctctcgct cctgtcgggc gggctcaccg
      481 ccttcgcgca ggacaggcgc ccggcgcgcg gcgagcagca gcggcaaagc gaggccgagc
      541 gcaaggagcg ggtcgagcgc gagctgatac tgacgcagca cggcggcgac ttccatattc
      601 gcgtccccgg ccccgccgag ccgggcgcgc cgcccttcgg cagggacacc ttcgtttatc
      661 tctcgaccga gatgagcctc ccgggcaaga cggtcaaggg cgcgccctac tcggccgagg
      721 ccgtgaccga gaccgtgcag acgctcgccg acggcaaccg catcgtgcgc aagaacaccg
      781 cgcaggtcta tcgcgacggc gaggggcgca cgcgccgcga gttcacctta aacgccctcg
      841 gcccctgggc gtcgcaggac gatgcgccgc gcaccgtctc gatagttgac ccggtggcgg
      901 gcgtcagcta ctcgctcgac gcgcgcacgc gcaccgccca caaggttccg ttaggcccca
      961 tgcgctcgct tcaggcagcg cccggcggcc acgccgaagt cttctcgatc ctccgctccg
     1021 gcaggggcgg cgacgtgaag cccgttgaca tgaagggcgt gaagtccacg ctccaggggc
     1081 gcgtgctcag caaggccgag gccgtgaacg cctcgggcct gaaggagcgc gagatggtgg
     1141 cagtcaagat taaggtcgga gcgtcgggct cggtcgagtc ggccgaggcc gtcgtcggcg
     1201 agaacgccgc gctgcgcgcc gccgcggtcg aggccgcgcg caagtggagc tttaagccgg
     1261 gcgaggccga gaccggcgcc atcctcttca agttcgacgg ccgcgcgagc gcccccggcg
     1321 agattgcgcg cgtcttcgag atgtctaagg aggagaccgc caacggcgcg aaggcgacca
     1381 ccgtgctcgc cttcgacgag cccggcgtgg agacgcagca gctcggcaag caactcgtcg
     1441 agggcgtcga ggccgagggg acgcgcacca ctcgcaccat ccctgccgga gagataggca
     1501 acgagcagcc catacagatc gtcagcgagc gctggtactc gcccgagctt caggtcgtgg
     1561 tgatgacgcg ccacagcgac ccgcgaatgg gcgagacgac ctacaagctg acgaacgtcg
     1621 tccgcggcga gccttcggcc ccgctcttcc aggtgccttc ggactacacg gtgcgcgagg
     1681 cgccggcctt cggcccgcgc gccctccgcc gctcgaaggt tcccgcgccc gactttcagt
     1741 aggaagcccc tgattaacga catatcgccg cggcgccttc gcgtgagaca agcacgcgaa
     1801 ggcgccgcgg cgatatgcta agacttccgg cctgaaaaat tttacgccct cacgccgcgc
     1861 cctctttctt cgacgcgcgc cggcgcttcc gcgtcacgcc cccgcggccg ttacccttgc
     1921 cggcgccggg cagccggctc gcggcctcgt ccgtgatgac gcacaggccg ctcacgcccg
     1981 agcttttcaa ctcgcgcacg agcgcggcgg cctcggcgta aggcagcccc gcggcctcgc
     2041 gcccgcgctc actcatcacg gcccaacgcg cctctttaaa ctcgctcatc aattagaagt
     2101 ttaacaaccg cccgcgaggc cgaacaagcg ggccgcgctt gcggccgtcg gcgcgcgggc
     2161 gttaatctct ggctacgaaa tcagagacgg ggcgcgaagc ccgaagcctt tccccggctc
     2221 gagccacacc cgaaggaaca gaagatgaaa aaactgtcac tgctcttttc cctcccgctc
     2281 ttgctgtgcg gcgcgtgcgc gaccgagcag aagcccgcgg cgacgcagaa cggcgcggcg
     2341 tcgcaagccg gcggcggcga ccaggcgttc aagtcgctgc acgaccgcta cgtcgtagag
     2401 ttcctgcgcc gcaacccgac cgtgaacacg tacctcggcg gcgccggcct cgacccctcc
     2461 ttgcgcgagg ccgacggccg cctgcgcgac cactccgccc aggcgctcgc cgacgaagac
     2521 cgctggctat ctgagacgca gaagtccttc gagggggtcg cgcccgactc gctctcgccc
     2581 gcgcgccgca tagaccgcga agtcgcgctc gcgcagatac gcttcctcct gcaccagcac
     2641 cagcagcgcc gctatcagga gcgcgccgtt gacacctacg tctccgagcc cttccgcgcc
     2701 atagactggc agctccaggg catgacgaag gtcggcgagg gcgacaagac ctacggcacg
     2761 cccgaggagt gggcgctcgc cgccaagcgg gtcgccgaca tcccgcgctt cctcaccgtc
     2821 gcgcagcagc agctagaggc gggcgtcaag tccggcaaca cggccgacca ccgcatgctg
     2881 cgccgcgacg gcataaacac ctccgaggcc aacgccaaat atttcggcga ggagttgccc
     2941 aagctcgccg ccgagcgcgt cgcccccggc cccgaccgag accaactcct ctcccagatt
     3001 cgggacgccg gccgccaggc cgccgacgcc taccgaaagt tcggcgactt cgtccgcacg
     3061 accttcttcg acacttcggc cggagcgccc ggcgggctcg cccccaagca gcagttcgcc
     3121 gccgaccgct tcgctatggg cgcgcaggag tacgactggg cgattaagaa caacctccgc
     3181 atggagacga catcggcgca gctctacgac ggcgcgatgg cgatagtcga aggcacgcga
     3241 aaagagatga tggagctcgc gcgcaaggtg ggcgagaagc gcggcatgca gttgccggag
     3301 gacggggccg tggccgtgcg cgccgtcttc gacgagctgt cgaaggacta cccgaagtcg
     3361 gacgacgaga tggtcgcgtg gtacagggac acctgcttcc gcatcgttga ctacgggcgg
     3421 aagaccggcg tgttcgacgt gccggccgac tacaagctcg acgtgacggt gacgcccccg
     3481 cccctgctcg cctcgattga cggcgccgcc tactaccccg cgccgccgtt taagacgagc
     3541 ggcgtcgggc gcttctacgt cacgccgacg ggcaacgacg aggcggcgct caaggacaac
     3601 aaccgcgctg cgctcgcaga cctcgccgtc cacgagggct tccccggcca cgactggcac
     3661 ttcaaggtga tgacgcagtt caagaacgac atcgcgcccg tcaggtggct gacgcccggc
     3721 gcggtcgagg actccagctc gatgtggcag gactctatgg cgtccgaagg gtgggcgctc
     3781 tacagcgagg ccctcatggc cgagcccgcg cagggcgcgc ccgagggctt ctacacgccc
     3841 gaggagcggc tctaccagct ccgcggcaag ctctaccgcg acctccgcgt gcgcatagac
     3901 acgggcattc acaccggccg gatgagctac gacgaggcga cagacctctt ctccgaggtc
     3961 gttgacttcc tgccgggcaa gtgctccgac gcttcgagga ctgaagccaa gcgcgcgagt
     4021 tgcgagtcgg ccgagcgcgc catcttccgc tactcgaagt ggcccacgca ggccatcacc
     4081 taccgcctcg gcaaagacca gatatacgcc ctgcgcgccg acgcctcgcg cctcgtgggc
     4141 gacaagttct cgcccaaaga cttccacctc ctcttcatga agcaaggcac catccccgtc
     4201 ggctacttcc gcgaagagct cctcagggag ttgcagaaga aatagggaga agagcaagag
     4261 aggcttgttg gggcggccca ctgcgggccg ccccaacttt attcgtagcg caggcactcg
     4321 atggggtcta ggcgggaggc tttgaaggcg ggccagacgc cgaagactaa cccgacgcct
     4381 acggagacta gcaggcccgc gactacggcc cacagcggga ttgccgccgg gagcgagggg
     4441 aagaggaagg cgattatctt gctgatggct atggcgagca gtacgccgat gacgccgccc
     4501 atgaatgtga gcgtcatcgc ctcgtagagg aactgccgga ctatgtcgcg gcggcgcgcg
     4561 cccaccgcct tgcgcactcc tatctcctgc gtcctctcgg tcacggagac gagcatgatg
     4621 ttcatgacgc cgatgccgcc gaccataagg ccgatgctcg agacggcgat ggcgaagagc
     4681 cctatcatgc ccatgatgct gtcgaactgg ttgatgaact tgtcggcggt gccgaggtcg
     4741 aagttgttgg gctggtcgaa cttcacgccg cgctggcggc gcagtatctc ctcggtctga
     4801 tccatcgcct cgcggaagtg gccctcgcgc gcgcgcacta ttatcagtat gtactcgctg
     4861 ccgggcgaga cctgccgcgc cgtgcggaag gggatgaaga cgaggttgtc ctcctcgttc
     4921 tcgccgaaga tggcggcctt gcgcttctcc aagactccga ttatctcgaa ggggcggccg
     4981 ccgagtttca cctcaatccc gactatctcc tcgggcgact ttccggggaa gagcgcgtcg
     5041 gcgatgttga ggccgatgac catcacgctg cggcggttgt cgtcgtccga ctccgagatg
     5101 aagcgcccgg cccctatgtt caggttggcg gccgccgcgt agctggcggt gacgccctgc
     5161 acctgccccc gccggtggtt cttgccctgg tactgaatcg tgctgtccca ccacgcgacc
     5221 aggagcacgg tcgcgacctc ctcgacggcc ggcgcgccgc gccgtatggc ctcggcgtcc
     5281 tcgtgccgga ggggcttgcg cgtgcgctcc tcttcgaggt tcggccccga cgtgaagccg
     5341 gtggagaggt ggaaggcgta gatgttgttc gtgccgtact cggcaatcac gtcaatgatg
     5401 gactggcgca cgcccgtcag aagcgacgcg acgacgatga cgaccacgac gcccacgacg
     5461 atgccgaaga ccgttaggaa gctgcggagc ttgtgcgcac gtatgctgtc gagcgccatc
     5521 agcagaatct ctttcggcaa aaacttcggg gctctcagct tcatatgggc gtgaaagact
     5581 gacttacttc ctggcgagcg cgacgatggg gtcgaggcgc gaggcgcgga aggccgggta
     5641 gatgccggct atcatgccta tcccgcccga gaccgcgagc gagaggacta tgtagcccgg
     5701 cgttatcgtc atcgttatcg agaaggcgcc ggctatcagg ctcgtcgccg cggccgcgag
     5761 cgcgatgccg atgagcccgc ctaaggtcgt gaggaacgac gactctatca ggaactgcaa
     5821 gagcacctgc ctgcgcgtcg cgcccagcgc cttcctcaag cctatctcga aggtgcgctc
     5881 cgtgacggag accagcatga tgttcatcac gacgatcccg cccacaagga gcgatatgaa
     5941 agttatcggc atgacgaccg ccgcgatgcc gcccgtcagg gcgtcaacgg cgttgctgac
     6001 ctcgcccgtg ttgacgaggc cgaagtcgtc ctcctcgttg cccttgagct tgtgcttgtt
     6061 ccgcaaggcg aggcgcgcgt cctcgatcgc gcgctggaac tgctcgcgcg aggcggcctt
     6121 gccgtgaatc tgtatgctct gccggccgcc gacgccgaag attttacgga aggtcgtcaa
     6181 gggaatgtag gcgtggttgt ctaacgactg cccgagcatc gagccgcgct tctcctcgac
     6241 cccgacgatt tcgagcggga tgccgcgcac gctcaggcgc cggcccacgg ggtcaaccgc
     6301 agggaagaac ttctccctga cgtcgtggcc gaggactacg accatcgccg ccgtctcgac
     6361 ctcctgcggc agcaggaagc gcccctcggc tatggtcttc tcctctatcg aggccatgtt
     6421 ggcggtgacg ccgagtatct cggtgccgaa aagctcctcg ccctcgtgct tgaggtcaac
     6481 gcgccactcg tactgcgcgc cgacctctgc gcaggcggcg cagttcgcgc gcacccactc
     6541 gtagtcctcc acctccagcc gcttgttgcg gcggttcatc ttctcccact cctcctccga
     6601 cagctcgccc gcgtgcgcta tgcgcgcgat catgaagtgg ttcgtgccga gcacggccgt
     6661 caccttgtcc atgacgtagg tgttcaggcc cgatatggcg gcgcccacca cgacgaccga
     6721 agcgacccct atgatgatgc ctatcagagt gaggaaggcg cgcagcttgt gcgcgaatat
     6781 tgactggacg gcgatcttcg ccgcgtcggc gtagaaggtg tagagcgttc tcataagggg
     6841 cgagcgcggc cgggcggaag gtcgttcctt ccccgccgat aatacgccgc gcgcgccgtc
     6901 aatgtttacc ggcgcggcgg tgagaaaaat ttcgacgggg gcgcaaggaa cctttttcgc
     6961 gaagactgtg tctaagtcgg caggtaggaa aaatcaaact ctcaaggcgc gggggccaca
     7021 gcccgtctcc tcccctgccg gggtttcctg cgcccgaacg gaaaggagag gcccatgccc
     7081 gccgcccgcc cttccgcgcg cgcgctcgcc ctcgcggcgc tgctcgcttc cctccttgcc
     7141 ctgcccgccc cgctcccgac gcccacgcgc gtcgcggcct gccccgtggt tccgcccacg
     7201 ccgctgcgca tgctctacaa gaagagcgcg ctcgtcgtcg tggccgaggc cggggagacc
     7261 gcgcgtgagc tgagcgccga gccgctctac gagggcggcc cgaggatggt gactctcaag
     7321 actaccttcc acgtctcgga gagcctcaag ggagacccga gcgagacgcg ccccgtagtc
     7381 aacttctggg gcggctacgc cgggatgcgc gtggagggcg actaccagaa gggcgaccgc
     7441 gcgctgctct tcctagaggc ggacgagggg cgcgacggct acacgctcgc ggactaccgc
     7501 tacggcgcga agcgccttcc ggaagacgac ctgaaggtct atgtgcagcg cataagggaa
     7561 ctctcggcca tactgggcac ggagaagcct gacgaggccg cgctgctcga atggctcgtg
     7621 cgctgcgcgg aggagaaggc cacgcggtgg gagggcgcct acgagctttc ggccacgatt
     7681 gtctcgacgg acgaagagga ggaggaagaa gaggagcagg tctcgctcga agagggcggc
     7741 gagggcgaag agccggccgc cgaagagggg ccggccgaag acgctgccgg ggaagaagcg
     7801 gcggccgaag agacgacgga agagtcgccc gaagccgcgc agggcgaggc gcccgtcgaa
     7861 ggcagcgccg agaacgtcac gctcgcaagg ctcgggggct taggcacaga cctcgagccg
     7921 ggcttcgcct cgaagctaag cgacgagcag agggagcgcc tgtactcggc gctcttcaag
     7981 gccgacgagg tgggcgacgg cgagatcgcc ctgctgcgtc tcgccagaga ctcgggcgac
     8041 gcgcgcctcg tccccttcct cgtcaaacac ctccagggca tggacgccga gcccacctac
     8101 gacgcgcacc cgctgatcct cgcgctcgcg cacgcgctcg acgacaagga gataaagagg
     8161 ctcgccaaag actacgtctc gaacgcgccc tacacagagt acgtcgagga ggaagaggaa
     8221 gcggcggccg aaggcgagga ggctgactac gaaggggagg atgaggaaga ggccgactcg
     8281 ggagagccga aggtcaaggg cgttgaccgc cgacgcgaga tgctgcgcgc cttcctcgcc
     8341 gccgttgaca acaagattca gtacgacctc gcaatgcaac tgagccgcta ggcggcgccg
     8401 ccgtcatgcg ccctcggcga ggcgtatgcc ggcgaaggct attcggaagg ggcggcggaa
     8461 gaagttccgg aacgaggttc tgagcaccga gtcgctcgtc gcccacgagc ctcctttgag
     8521 cacccggtgg tcgccgtcga accaggtctc ggagtattcc gggtagggga agggctcgaa
     8581 gccggggaag ccctcgaacg gcgtcgaagt ccactcccag acgttgcccg tcatgtcgag
     8641 gcagccctcg acggaagcgc ccgcggggaa actcccgacc tcggcagtcc cccacagtcg
     8701 cccgccggag ttgcaaagct cgggtgaggg cggctcgtcg ccccacgcga agcggcgctt
     8761 gcgccgcccg tcccaggagg ccgcgcgctc ccactcctcc tcggtcggca ggcgcttctt
     8821 cgagaagcgc gcgaaggctt cggcctcgtg ccagctcacg cccgtcacgg gctgctcacc
     8881 ttcgagcgcg ccctcgccga acatgccgcg cacgcgccac ccttcgcggc cctcgcaccg
     8941 ccagtggaga gggtgtcgcc agccctcccg ctcgcggcac gcccagccct cttcgcccca
     9001 gaactcgcgc cgctcgtagc cgccctcggc gacgaagcgt gcgtactcgg cgttcgtgac
     9061 cggcagccgc gcgattcgga aggcgggcag agagaccgcg cgcgcgggca gctcgttgtc
     9121 gtatgcgaac gaccgcggcc acacggagcc catctcgaac gtgccggccg gcacgtctat
     9181 catcccgccc gatgttgacg aagggcgtgc cggctgaagg tctctcgcgt cgtcggggcg
     9241 cgacttcttg gacgggtcga ggagttgcag gaggtatgcg agcgtctcct ggtgctggcg
     9301 ctcgtgctcc aagactagct ggaacacgta gccgtcgcga aggagagggt cgcttgagtc
     9361 gaagtcgaag cgctcgaggc ggcgcagcgc gccgtcgcgc acgcgcgaaa gatagctttc
     9421 catctcgcgg cgcgcgggga ggttcttcga ctcctcgcgc ggcgtcctga tggggtcgaa
     9481 gatgcgctcg tatcgctcgt cgggcggggg ctcgccgccg accttctgca gcagccagta
     9541 agcctcgaag acgcctacgt gcgcgaggtg ccagaggagg gggcggtagc cgaagccggg
     9601 gctttcgcgc aggtcgtcct cgcgctcgac taggtcgaag agtttaagag tcgcggcgcg
     9661 cgcgtcaccc atctcgcgcg ctatctgttc ggcccgttcg tccatcgtca cctcggcggc
     9721 ttccgtgtac ggcctcgtac cgaatgagtt atcatagcgg ccgagcgtaa gacaaggcgg
     9781 cgcggtcccg aagcccgtaa ggaaagttga gcccgaacag atgccgagcc cccgcggcga
     9841 acttacgagc gagcgcctgc gactcgtgag cctcggcggc gaccgaacgc gcgaggagtt
     9901 cgccgaggac gtgcggcgcg gcctcacggc ggggcggaag tccctaccgc cgaaatattt
     9961 ttacgacgag ttgggctccc gcctcttcga ggccatctgc ctcctgcccg agtattacct
    10021 gacgcgcgcc gaggccgaga tattcgagcg ccattcggaa gagattgtcg aggcggccac
    10081 cgacggctcg cgcttgacgc tcgtcgagat ggggtcgggc agcgcctcga agacgcggcg
    10141 catcatcgag gctgtgctcc ggcgccagcc gcgactgctc tacgtcccgg ttgacatctc
    10201 gaccgccgcc ctcgaagaga gcgcgcacgc gctgctcggc gactaccccg cgctgagcgt
    10261 cgcggcctac gcgggcgact acgacgcggc gctcccgcgc ctcggcgaga acttcggcga
    10321 cggcgcgcgg gcgctcgtcc tcttcctcgg ctcgaacata ggcaacttcg accgcgacgg
    10381 cgcgcgcgcc ttcctgcgaa agctccgcgg cgtgctccgc gctggcgacc gtctgctgct
    10441 cggcgccgac ctgaagaaag acccggcgac cctcgaagcc gcctacgacg acccgctcgg
    10501 cgtcacggcc gccttcaacc tcaacctcct cgcgcgcatc aaccgcgagc tgggggccga
    10561 cttcgacccg cgctccttcc gccacgtcgc gctctacgac gcggggagcg gccgcgtcga
    10621 gatgcacctg gagagcctgc gcgggcagga ggtcgaggtg cgcgccctcg gcctcggcgt
    10681 gcgcttcgcc gcgggcgagc gcctgcacac cgagaactct tacaagtacg acgcgggaga
    10741 gctctccgcc ctcgcagccg agaccggctt ccggctgcgg cgcacctggc tcgactcggc
    10801 gggccgcttc agcagcaacc tcctcgccgc cgaagactga gacagccgaa ccgggataca
    10861 cctcatggct caacattcga gagtggctaa gggcggcgag gggttcccgc ttctgaccga
    10921 ccccgtcggg gccgactccg ccccgctctt cgtcgagaat ttgcttcgcg gcgagaagcc
    10981 cccggccgag tggctgtgcg gcatagagtt cgagctgttc ggctacgacc gctcgcgcgg
    11041 cttcgagcgc atcaacgcgg agcaggtgca gaaagttctc gccggcttcg cgccctcgtc
    11101 caacgatctg gtttacgagg gcggcgccct cgtcgaagtg agcgacgggc acatgaaccg
    11161 cctgacggtc gagccgggcg ggcagataga gttctcgggc gcgcccaagc ggagcctcgc
    11221 cgaagtcgag cgcgaagtcc gccgccacct cgcgcgcctg gcagagatag ccgaaagcaa
    11281 ccggctctgc ttcgtcgccg tcggcttcga ccccctgcgc tcgctcgaag accagcgctg
    11341 gttcccgaag cagcgctacg acgtcatgcg cccctacctc gccacgcgcg gcgcgcgcgc
    11401 gtgggacatg atgacgcgca cctgctccgt gcagtgcaac ctggactacg gggcgcccga
    11461 cgacctgagg aagaagttcc tcgcaggcaa ccggctcgcg cccgtcgtca cggccatctt
    11521 cgccaactct cccttcgagc gcgggcggcc ctcgggctac aagtccacgc gcgcggcggc
    11581 gtggctcgcg acagaccccg accgctgcgg ccccgcgccg cccgcctcct ccgacgactt
    11641 cgcgcctgcc gaatacgtgg catacgccct cgacgtgcct atgatcttcg cgcagcgcgg
    11701 cggccgctac gtcggctcgg tcgcaggcac gcgcttccgc gacttcgccg cgggcggccg
    11761 cgcagggctc tcgcccgtct tcggcgactg ggccgaccac ctgacgaccg tcttcaccga
    11821 cgcgcgcctc aagcagcaca tagagctccg ctcagccgac tgcaacgacc tcgaaacttc
    11881 gctcgccgtg caggccctct ggaagggtct gctctacgac tccgccgcgc tggacgaagc
    11941 gctcaggctc gcgccccgcc tcgaccgcgc cgacgcgatg gcgcttcgcg agagcgtcgc
    12001 gcgcgaaggg ctcgccgctc gccgcgcggg cgttgacgtg ctcgccatcg cgcgcgagtt
    12061 ggtcgcgctc gcggccgagg gcttgggccg gacggcgccc gaagaggcgc gctacctcga
    12121 cgtgctcacc gagcgcgtcg cccgcgacgg cgtctgcccc gccgacatac tcctgcggaa
    12181 ctgggagggc tcgtgggccg gctcggtcga gcgcgcgctc gagcacctgc gcgtcgcctg
    12241 aaaccgctat gagagacgag acggagggcg aggcgagaca cgttgacgac ggcgctgccg
    12301 tcgtcttccg cggcgtgacc tacgcgccga ttcctgacgg cgcgcccgtc atcagcgacc
    12361 tcgacctgga aatccgccgc ggcgagacgc tcgtgctgct cggcgagtcg ggctgcggca
    12421 agacgacgac gctccggctc gtcaaccgcc tgctcgtgcc gacctcgggc gccgtcttag
    12481 tcgaagggcg tgacacgcgc gagtgggacg agattgcgct gcggcgccgc acgggttacg
    12541 tcattcagga cgccggcctc ttcccgcact tcaccgtggc ccgcaacgtc gggctcgtcc
    12601 cctcgctcga aggctgggac gcggggcgca cggccgcgag ggtggaggag ttgctgcgcc
    12661 ttgtcggctt agagcccgag aagttcgccg accgttaccc ttcggagctt tcgggcggac
    12721 agcgccagcg cgtgggcgtc gcgcgggcgc tcgccgccga cccgccgctt cttctgatgg
    12781 acgagccctt cggcgcgcta gacccgctga cgcgcgcctc gctccagcgc gagttcgcgg
    12841 aactgcaaag gcggctcggc aaaactgtcg tcttcgtcac gcacgacgtg cgcgaggctc
    12901 tcctcctggg gacgcgcgtc gccctgatga gcgccggccg catcgtgctt ctaggcacgc
    12961 cggaagagtt cctgcgctcc gacgagcctc acgcgcgcgc ctaccgcgcg acgattgaag
    13021 cgccggccgg agcacgaccg gcggagggcg gcgccccgtg agccccttcg agttcatcgc
    13081 ccgcaactgg cgggaggtgc tcgcgctcac gggcgagcac ctcctgctcg tcgccgtctc
    13141 gaccgctatc gcggttgccg tcgggctccc cctcgggctc ctgctcacgc gccgtccgcg
    13201 cttcaagcgc cctgtgctcg ccgtcgccaa cgtcctgcaa actgtcccga gcctcgcgct
    13261 cttcggcctg ctcataccgc tcccgctcgt aggcggcatc ggcgcgcgca cggccgccgt
    13321 ggcgctcgtg ctctacgcgc tgctgcccgt catacgaaac accgtcaccg gcgtcgaggg
    13381 cgttgaccgg ggcgtgcgcg aggccgcggt ggcgatgggg atgacgccgt ctcagattct
    13441 gcgtcaggtc gagctgccgc tggccgcgcc cgtcatactc gcgggcgtgc gcgtggcgac
    13501 cgtcatctgc gtgggcgtgg cgaccatcgc cgctgccatc ggcgcgggcg ggctcggaat
    13561 gtacatcttc cgggggctcc ggcagtacga caacaacctt ctgctcgcgg gcgcgattcc
    13621 cgccgccctg ctcgcgctcg cggccgacgc cgggctcggc ctgttggagt cgcgcatgga
    13681 cgtgaggcgc aggcggcggc gtgacggggg gagcgcggcc gcgcggcgag tcgtgctggc
    13741 ggccgtcgtg ctcgccgtca tggccttcgg cgcctacgcg ctgctgcgtc gcggcggggg
    13801 cgggggtggc gagcgtgcgg tcgtcggctc gaaggatttc accgagtcca tcatcctcgc
    13861 cgagatgctc gcgcagatgc tcgaagagcg cggcgtgcgg gtcgagaggc gcttcgagct
    13921 tggcgggaac ctcgcgcacg actcgctcgt ctcgggccgc atagacttct accccgagta
    13981 cacgggaacg tccttcaccg cgattctcaa gcacgcgccc ttgacagacc cgcgcgccgt
    14041 atatgagcag gtcaggcgcg agtacgccga gcgcttcaac gtcgaggcga gcgcgccgct
    14101 cggcttcagc aacgacttcg ccatactcgt ccgcggcgac gacgcgcgcc gcctcgggat
    14161 aaagaccgtc tctgaggccg cggcgcacgc gccgaagtgg cgcgcgggct tcgggcagga
    14221 cttcatgtcg cgcgccgacg gctacgaggg cttcgcgcgc gcctacgggc tgcgcttcgc
    14281 cgcgcgcccg cgcgagatgg acttgtcgct ctcttaccgc gcgctggccg aacgagaggt
    14341 ggacgtgatt gccggcaact cgaccgacgg catgatcgcc acgctcggcc tcgcgcagct
    14401 cgaagacgac cgtcactact tcccgcccta cgaggccgtt ctggtcgtgc gccgcgacgc
    14461 gctcgaacgc ctcccgcggg cgcgcgaggt tctacagagg ctcgcgggct ccatctcgac
    14521 cgaagagatg cgc
//
LOCUS       DASPKR010000143         5043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_794081, whole genome shotgun sequence.
ACCESSION   DASPKR010000143 DASPKR010000000
VERSION     DASPKR010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5043)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5043
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_794081"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VD968_04065"
     CDS             <1..316
                     /locus_tag="VD968_04065"
                     /inference="COORDINATES: protein motif:HMM:NF015113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HYE13600.1"
                     /translation="RSIAPFDVVVTVTNVKNTEMVEAGERLYEQLTAAGLDVLLDDRD
                     ERAGVKFKDADLIGIPLRLTVGKKIAEGRVELFDRATKQSDDVALEDVAAEAQRRALA
                     GL"
     gene            complement(324..1277)
                     /locus_tag="VD968_04070"
     CDS             complement(324..1277)
                     /locus_tag="VD968_04070"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HYE13601.1"
                     /translation="MGESTAVLLFVGSVAAVYVLAACALARAALRRLGWLGESSRAVR
                     RAERASLALAGLGLLCFAYGYVVEPYWPEVTRVRIESAKLAGAERPVRLVHISDLHCD
                     PEARLEGRLPKIIAAERPDLIVFTGDSLNSPEGLPVLRELLPRLTAIAPTFAVRGNWD
                     TWYWGRLELFGATGVKELRGEAVRVEAGGARLWVAGAPYGLTGDPRGGIERALGGVPP
                     GEFAVFLYHTPDEILEAAATGRVDLYCAGHTHGGQVALPFYGALVTLSKFGKKYESGL
                     YREGPTHLYVNRGVGMEGGHAPRVRFFARPEITVIEIAPGG"
     gene            complement(1282..2751)
                     /locus_tag="VD968_04075"
     CDS             complement(1282..2751)
                     /locus_tag="VD968_04075"
                     /inference="COORDINATES: protein motif:HMM:NF014503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13602.1"
                     /translation="MINKKHRVSLLLFIVLHSALCTLFVGCGARRSPDLARVFAGVRG
                     REGKLPVIVIPGILGSRIVNRKTGEVVWPSALRSSVDGLSLPATPNLEANRDELVAAR
                     IVETARLARFAPEVYVYHGLLRALEDYGGYREGDWDNPPEGGDRDTFYVFPYDWRRDN
                     VETARLLVRRVEALKLRLGRPDLRFNVVAHSMGGLVARYAAMYGDRDLPAAGAAPAPD
                     WRGSDFVNKIFMFGVPNEGSMEAFATLLEGYSVTEGLRRRVRLLNKLSREDALTAPSM
                     FQLLPHRAQARFLDENLKPIDVDLYDAETWRRYGWSAAADPEFRSAYARGEPRGQESP
                     THRGTLEELDAYLSAVLDRARRFHEALDAPAGDSPVKLFAFGGDCEETLTAPVVFRDE
                     KQGRWVTLTRPRSLKAADGRKLSRREVIHAMYEPGDGRVTRPSLMGLNLAGRRASAFY
                     ATPLPVAYAVFACDLHSDLQINKTLQDNALTLLVNELAD"
     gene            complement(2755..3516)
                     /gene="larB"
                     /locus_tag="VD968_04080"
     CDS             complement(2755..3516)
                     /gene="larB"
                     /locus_tag="VD968_04080"
                     /inference="COORDINATES: protein motif:HMM:NF033503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarB"
                     /protein_id="HYE13603.1"
                     /translation="MDLKEIERLLRAFKTGELDEREAARRIGELHFEDIGHSRVDHAR
                     ASRQGFPEVVFGAGKTRQQVVEIVESIARRAPNLLVTRTDEATFGEVRNVCTEAEWHP
                     AARMIRVMRDRTERGAGTVLVVTAGTSDIPVAEEAALTAEAMGNRVERVWDAGVAGIH
                     RVMAERERLRRARVVVVAAGMEGALPSVVGGLVSVPVIAVPTSVGYGASFGGLAALLG
                     MLNSCASNVTVVNIDNGFGAGFVASLINREVRGEE"
     gene            3641..4273
                     /locus_tag="VD968_04085"
     CDS             3641..4273
                     /locus_tag="VD968_04085"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: protein motif:HMM:TIGR00421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0106141 - flavin prenyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin prenyltransferase UbiX"
                     /protein_id="HYE13604.1"
                     /translation="MELTVAVTGASGSIYAQRTLFQLAASGAVERVNLIMSGSALVVA
                     RVEAGAKIAEGDVRAVNEWAGLAADSKLVRFHRLDNMAAPPSSGSHPQAGMVVVPCSM
                     GTLGAIASGAGTNLIHRAADVTLKEGRKLVLVVRETPFNAIHIENMLRLAHAGARVMP
                     ASPGFYHRPQTIEQLVDHLVFRVLDQFGVPHTQATRWRGDPAGASAAGAE"
     gene            4270..4767
                     /locus_tag="VD968_04090"
     CDS             4270..4767
                     /locus_tag="VD968_04090"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE13605.1"
                     /translation="MNKQMTQTEWRRGPHTISTDRARLDIEAVHDYLANHSYWALGRS
                     LEVVRRSVEHSLCFGLYEGERQVGFARAVTDYATFAYLADVYVLEEARGRGLGKWLVS
                     TVLAHPDLQGLRRWLLATRDAHELYRPFGFRELERPEFYMGILNEGGGGGRFVAEGED
                     GGSAG"
BASE COUNT          807 a         1737 c         1752 g          747 t
ORIGIN      
        1 gcgctcgata gcgcccttcg acgtggtcgt gaccgtgacg aacgtgaaaa acacggagat
       61 ggtcgaggcc ggcgagcggc tctacgagca gcttacggcc gcggggctcg acgtgctgct
      121 cgacgaccgc gacgagcgcg ccggcgtcaa gttcaaggac gcggacctca tcggcatccc
      181 cctacgccta actgtcggca agaagatagc cgaggggcgc gtcgagctct tcgaccgcgc
      241 cacgaagcag tcggacgacg tagccctcga agacgtagct gccgaagcgc agcgccgcgc
      301 cctcgccggg ctgtgagagg cgctcacccg cccggcgcga tttctatgac tgtgatttcg
      361 ggccgcgcga agaagcgcac gcggggcgcg tggccgccct ccatgccaac gccgcggttg
      421 acgtagaggt gcgtcgggcc ttctcggtaa agcccgctct cgtacttctt tccgaacttc
      481 gagagcgtga ccaaggcgcc gtagaagggc agagcgacct gaccgccgtg cgtgtggccg
      541 gcgcagtaga ggtcaactcg gcctgtggcc gcggcttcga gaatctcgtc gggcgtgtgg
      601 tagaggaaga cggcgaactc gcccggcggc actcccccga gcgccctttc gatcccgccg
      661 cgcgggtcgc cggtcaggcc gtagggcgcg cccgcgaccc agagtctcgc gcccccggcc
      721 tccactctca cggcctcgcc gcgcagttcc ttcacgcccg tcgcgccgaa cagctccaaa
      781 cgcccccagt accacgtgtc ccagttcccg cgcacggcga aggtcggcgc aatcgcagtg
      841 aggcgcggca gaagctcgcg cagcaccggc aagccttcgg gcgagttcag ggagtcgccc
      901 gtaaacacga tgaggtcagg ccgctcggcc gcgatgatct tgggcaggcg gccttcaaga
      961 cgcgcctccg ggtcgcagtg aaggtcggag atgtggacga ggcggacggg cctctcggcg
     1021 cccgcgagct tcgccgactc gattctcacg cgcgtcacct ccggccagta gggctcgacg
     1081 acgtatccgt aggcgaagca caagaggccg aggccggcga gcgcgagcga cgcgcgctcc
     1141 gcgcgccgca cggcgcgcga actctcgccc agccagccca ggcgcctcaa ggctgcgcgc
     1201 gcgagcgcgc acgccgcgag cacatagacg gccgcgaccg agcctacgaa gagcagcact
     1261 gcggttgatt cgcccatcgc ttcagtcggc cagctcgttc acgaggagcg tgagcgcgtt
     1321 gtcttgcagc gtcttgttga tttgaaggtc gctgtggagg tcgcaggcga agacggcgta
     1381 ggcgacgggg agcggggtgg cgtagaaggc gctagcgcgc cggcccgcga ggttcagacc
     1441 catgagcgag gggcgcgtca cgcggccgtc gcccggctcg tacatggcgt ggatgacctc
     1501 gcggcgcgag agcttgcgcc cgtccgcggc cttcagagag cgcgggcgcg tgagagtgac
     1561 ccaccgcccc tgcttctcgt cgcggaagac gacgggcgcc gtgagcgtct cctcgcagtc
     1621 gccgccgaag gcgaagagct tgacgggaga gtcgcccgcg ggcgcgtcga gggcctcgtg
     1681 gaagcggcgc gctcggtcga gcacggccga gaggtaagcg tccagctctt cgagcgtccc
     1741 cctgtgcgtg ggcgactcct gcccgcgcgg ctcgccgcgc gcgtaggccg agcggaactc
     1801 cgggtcggcc gccgccgacc agccgtagcg ccgccacgtc tccgcgtcgt agaggtcaac
     1861 gtctatcggc ttcaggttct cgtcgaggaa gcgcgcctgc gcgcggtgcg ggaggagctg
     1921 gaacatcgag ggcgcagtca aagcgtcctc gcgcgagagc ttgttgagca gtcggacgcg
     1981 gcggcgcaag ccctccgtga ccgagtagcc ttcgaggagc gtggcgaacg cctccatcga
     2041 gccctcattc ggcacgccga acatgaaaat cttgttgacg aagtcgctgc cccgccagtc
     2101 gggcgcgggc gccgctccgg cggccggcag gtctcggtcg ccgtacatcg ccgcgtagcg
     2161 cgcgactaag ccgcccatcg agtgggccac gacgttgaag cgaaggtcgg gccgcccgag
     2221 cctgagcttc aaagcctcga cgcggcgcac gagaagccgc gcggtctcga cgttgtccct
     2281 ccgccagtcg taagggaaga cgtagaaggt gtcgcggtcg cccccctcgg gcgggttgtc
     2341 ccagtctccc tcgcggtagc cgccgtagtc ttcgagcgcg cgcagcagcc cgtgatagac
     2401 atagacctcg ggcgcgaagc gcgcgagccg cgccgtctcc actatgcgcg ccgccaccag
     2461 ctcgtcgcgg ttggcctcga ggttcggcgt cgcgggcaaa ctcagcccgt caaccgacga
     2521 gcgcagcgcc gaaggccaga ccacctcgcc ggttttccgg ttcacgatgc gcgagccgag
     2581 tatgccgggg atgacgatga cgggcagctt cccctcacgc ccgcgcacgc ccgcgaacac
     2641 gcgcgccagg tcgggcgagc gccgcgcgcc gcagccgacg aagagagtgc agagcgcgga
     2701 gtgcaggacg atgaataaga ggagcgagac tctgtgtttc ttatttatca tccatcactc
     2761 ttcgccccgc acttcgcggt tgatgaggga agcgacgaag cccgcgccga agccgttgtc
     2821 tatgttgacg actgtgacgt tcgacgcgca ggagttgagc atgccgagca gggcggccag
     2881 gcccccgaag gaggcgccgt agccgacgct cgtggggacg gcgatgactg ggacggagac
     2941 gaggccgccg acgacggaag gcagcgcgcc ttccatcccc gccgccacga ctacgacgcg
     3001 cgcgcggcgc aggcgctcgc gctcggccat gacgcggtga atccccgcca cgcccgcgtc
     3061 ccagacgcgc tcgacgcggt tgcccatcgc ctcggccgta agggccgcct cctccgcgac
     3121 ggggatgtcg ctcgttccgg cggtgacgac gagcacggtc cccgcgccgc gctccgtgcg
     3181 gtcgcgcatg acgcgaatca tgcgcgccgc aggatgccac tcggcctcgg tgcagacgtt
     3241 gcgaacctcg ccgaaggtcg cctcgtcggt gcgcgtgacg agaaggttgg gcgcgcgccg
     3301 tgcgatgctc tcgactatct cgacgacctg ctgccgcgtc ttacctgcgc cgaagacgac
     3361 ttcggggaag ccctgccggg aggcgcgcgc gtggtcaacg cgcgagtggc ctatgtcctc
     3421 gaagtgcagc tcgcctatgc ggcgcgcagc ctcgcgctcg tctagctcgc ccgtcttgaa
     3481 ggcgcgcagc agtcgctcta tttcctttaa atccataagc gaaaaaacgg cacgccccga
     3541 cggcgcgcgg acgggcattc tagcacccgc gccgcgcgcg cccgaagccc gcccgcttgc
     3601 ccgcgccgcg ccgcgccgcg taagatgcgc ttgctatttt atggagttga ccgtagcagt
     3661 aacgggggcg tcgggctcga tatacgcgca gcggacgttg tttcaactgg ccgctagcgg
     3721 cgcggtcgag cgcgtgaacc tgattatgtc gggctcggcg ctcgtcgtcg cgcgcgtgga
     3781 ggcgggcgct aagatcgccg aaggcgacgt gcgcgccgtc aacgagtggg cgggcttggc
     3841 ggccgactcg aagctggttc gcttccaccg gctcgacaac atggcggcgc cgccttcgtc
     3901 gggctcgcac ccgcaggccg gcatggtcgt cgtgccttgc tcgatgggga cgctcggcgc
     3961 gatagcctcc ggcgccggga cgaaccttat tcaccgcgcg gccgacgtga cgctgaagga
     4021 ggggcgcaag ctcgtcctcg tcgtgcgcga gactcccttc aacgcgatac acatcgagaa
     4081 catgctcagg ctcgctcacg ccggggcgcg cgtgatgccg gcgagccccg gcttctacca
     4141 ccggccgcag accatcgagc agctcgttga ccacctcgtc ttccgcgtgc tcgaccagtt
     4201 cggagtcccg cacacgcagg ccacgcgctg gcgcggcgac cccgcgggcg cctccgccgc
     4261 cggggccgaa tgaacaagca gatgacgcag accgagtggc ggcgcggccc gcacacgata
     4321 agcacagacc gcgcgcgcct cgacatcgag gccgtgcacg actacctcgc gaaccacagc
     4381 tactgggcgc tcgggcgctc gcttgaagtc gtgcgccgct cggtggagca ctcgctctgc
     4441 ttcgggctct acgagggcga gaggcaggtg gggttcgcgc gcgccgtcac ggactacgcg
     4501 acgttcgcat acctcgcgga cgtttacgtg ctcgaagagg cgcgcgggcg gggattgggc
     4561 aagtggctgg tcagcaccgt gctcgcgcac ccggacttgc agggcctccg ccgctggctg
     4621 ctcgccacgc gcgacgcgca cgagctctac cgccccttcg gcttcaggga gcttgagcgc
     4681 cccgagttct acatggggat tctgaacgag ggcgggggcg gagggcggtt cgtggccgaa
     4741 ggcgaagacg gcgggtcggc cggctgaatt ggcagagtgc gacccggcgc gcccgagcct
     4801 tcggcaattt gcaaagcccg gccggcttaa ttcagaattt ctaaggcccg cacccgacgg
     4861 cccgcccttt gccttaacgc agaatgcaga tggcttcaac gaccgcgaac atacgcacca
     4921 cgctcgagat gataaagatc gagcacacgc tcttcgcgct gcccttcgcc ttcctgggcg
     4981 cggtgctggc agcgggtggc cttccctccc tgtggcaact cacgtggatt acggccgcga
     5041 tgg
//
LOCUS       DASPKR010000144        11205 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_17856, whole genome shotgun sequence.
ACCESSION   DASPKR010000144 DASPKR010000000
VERSION     DASPKR010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11205)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11205
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17856"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..705
                     /locus_tag="VD968_04095"
     CDS             <1..705
                     /locus_tag="VD968_04095"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HYE13606.1"
                     /translation="DAQARRPSSVSPPPRRPVEGRAAQCESFDASLVNQGHAVLDVRS
                     AAEFGAGHVPGSVNIGLGGQFASWAGTLLQIGTPLILVADAEEKVDEAVTRLARVGHE
                     NVRGYLRGGAQEWRSAGFDLAVLPQVTVEELRRRLEEDEGLQVLDVRRPAEFAAGHVP
                     RAVSTPLSPRLREEAAPRLDPARPVAVVCAGGYRSSAAASLLKRHGLHNLLNVAGGTG
                     AWVAAGFPVEKPSGAN"
     gene            883..1881
                     /locus_tag="VD968_04100"
     CDS             883..1881
                     /locus_tag="VD968_04100"
                     /inference="COORDINATES: protein motif:HMM:TIGR01777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HYE13607.1"
                     /translation="MSKGRVVVAGGSGFLGRSLTEELLKTGREVVVLTRSARGKRLPA
                     GARAVEWDGRTLGPWARELEGAEAVVNLAGRSVNCRYTARNRREIVESRVNSVEALGR
                     AARACSSPPAVFVQAASLAIYGDAGARVCDETAPAGHGFPAEVCLRWEHAFNSLDLPA
                     TRKVLLRVGFALGRGGGALQTLARLARFYLGGTVGEGRQYVSWLHVKDFNRIVLWCIE
                     RADAEGVFNATGPCPVTNAEFMCELRSALRRPWSPRTPAWAVRVGAFLMRTEAELALA
                     GRRCIPERLVERNFKFLYTNLEAALADIFTPRPEAKEAAGRARRRAEKERLVLKRS"
     gene            2013..3569
                     /locus_tag="VD968_04105"
     CDS             2013..3569
                     /locus_tag="VD968_04105"
                     /inference="COORDINATES: protein motif:HMM:NF016196.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 family protein"
                     /protein_id="HYE13608.1"
                     /translation="MLVATFHGYGAAWLAVRMLFRPHRPVKVFGLTVWPQGMIPRHRE
                     RLAQTIGNAVGNELVSQETVVHALFETGFFQSRVEGLVGSYTEDLLNRNYTTVLDALP
                     KSVRAPVLDALGALQLRVAEHIAAALRSEETAEALTRFVDRRVDEALAQRLGDAVSDE
                     TFEQVLGFVENRFRGVVNEPGFEQKVREFVSARVDDLARSRATLAEMFTPQTVDIIKE
                     RVDREVPPIVQQLTEIATNRRTRTQIGALIKREVDDYYQQLNFFKKIFISRERIHHEV
                     DDLVNKTLPRRVGEYLSGEAFEQQAEEFLNSTIDGVLAKPVNELVGQIAPDKLEMIKE
                     QIAERILSLARGAELSASVSAYATDALQRVKPHTLRALLEHARPDSAEQLKSFLSRGL
                     MSVLSREETARTINAILSAQVEKLLVAPLGRVGDLVPEDKVRRASAVLTERINAAAAE
                     RLPAAIAEFDIGGIVREKVSGYPIKKLEELVLSVAKQHLRTIELFGLLIGFVIGVVQA
                     AYMYVRVFWR"
     gene            3735..4685
                     /locus_tag="VD968_04110"
     CDS             3735..4685
                     /locus_tag="VD968_04110"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYE13609.1"
                     /translation="MLARRVILAALLACSASGAARAQDFIRYDRFESERSDRLTGGRV
                     ERAEFEPGNPDIRLTLNVPSFRLTLWQGDREVKSYWVGVGMKDYPIYIGEREATQVIW
                     NPAWIPPASDWVSKRGGVRPGEVIKASDPRNPLGKVKIPLGDAYLIHQAAKTTDLGSL
                     VSHGCVRMLRSDLYDLAEKINAAHSYPVSPKRIAAAKRGSRQLVAQLPEPVPVDINYD
                     TLVVENGVLHIYPDVYDRRTNTVARLRAELESSGVSASALDDDTLKTMLDSVKPRTQF
                     VVEVSSIERGSALADGRTESVLPRPARPPAKRRVRAAAGR"
     gene            complement(4695..5348)
                     /locus_tag="VD968_04115"
     CDS             complement(4695..5348)
                     /locus_tag="VD968_04115"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13610.1"
                     /translation="MSSTKRGRGGAPARLTEAGMRRALRELSARDPDLARILSEHGPP
                     QWWEREEGFATLVFIILEQMVSLASARAAYERLVAAVAPSPLTPESFLALDGDALRRA
                     GFSRQKADYCRRLAVEVSEGRLDIPALARMSDEGVRAELTKIKGVGPWTADIYLLRAL
                     LRPDAWPAGDLALQIAAQEAKRLPARPTAAQLEALGQQWRPWRAVAARLLWNLYLNR"
     gene            complement(5362..7092)
                     /locus_tag="VD968_04120"
     CDS             complement(5362..7092)
                     /locus_tag="VD968_04120"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HYE13611.1"
                     /translation="MSSKTFVRAAGATLIAAAALVGGIVGGRAFGTQRASVGGAGGRV
                     TSDYNEALSVISDNYVDAVDYEKASEAAIQGMLWSLDPHSNFFTKAEYQRLLQDQESR
                     FTGIGVSILRHRDGVYVQTPIEGTPAARAGLRFGDRIVEVDGRDAREWSTQEVSKAVR
                     GPEGERVTIKIERAGTAAPQYFTIVRASVPQPSIRNVFMIRPGVGYVGMTGGFTQTTA
                     EELTDALERLRREGMQQLVLDLRGNPGGLLDQSIKVASKFVARGAPVVSVRGRGGEEV
                     REYKNNIGDPVDHPLVVLINRNSASASEIVAGAVQDHGRGLIVGETSFGKGLVQKVYQ
                     LPYGAGLTLTTAKYYTPYGRSIQRDYSAGSIYDYYTRHAPGAEPSPQTPTHPTHAETP
                     SRQTAASPTPTATPSPTPTPGGPAIRTAAGRVFYGGGGIAPDYEVKPLDVTSPVRSRI
                     FEESFHFVRRLIGGEIAGLESYRLTAGPQFGRYPRPTDLPVSEDVVKAFREFARRDPE
                     SGLKPAQLDAEIEYVKLRLREDIISAAYGGDAASRFLLESDPQLLRALELLPEARALA
                     ENVRRILASN"
     gene            7248..8102
                     /locus_tag="VD968_04125"
     CDS             7248..8102
                     /locus_tag="VD968_04125"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dolichyl-phosphate beta-glucosyltransferase"
                     /protein_id="HYE13612.1"
                     /translation="MSLSLSIVIPAYNEAARIGSTLEEIFRYLGEQKGAAEVIVVDDG
                     SSDETVKVTEGVFSSPARGRTEARVIRVEPNRGKGNAVRTGLLAARAPVALFSDADLS
                     TPITETPKLVEPIRSGQYDVVFGSRALDRSLIGVHQPWAREQSGRVFNLIMRLATGLP
                     YWDTQCGFKAFRMDVCRPVVEGAVIDRFGFDVELLYVAHAAGLRMLEYPVRWNDVAGS
                     KVGLRTGLQGFGELRQVRRNARRGLYDGAVRRAREAAARARGSRPVPPEEAGPESDVS
                     PELAAQRI"
     gene            8273..9031
                     /locus_tag="VD968_04130"
     CDS             8273..9031
                     /locus_tag="VD968_04130"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: protein motif:HMM:NF003625.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HYE13613.1"
                     /translation="MTARLNINIDHVATVRQARRAPEPSVVAAAMLCEQAGADGITVH
                     LRGDRRHIQTDDLFTLRRAVTTYLNVEMAATEEMMAVALDARPDAVTLVAERPDEITT
                     EGGLDVAENFDTVRRSVDRLREAGLFASIFIDPEARQIEAARDAGAQQVELCTASYCD
                     STLGARAVHAEGRALAEGELARLREAAALAAQYGLHVAAGHGLTYRNVGAVASIREIT
                     EFNIGHNVIARAVLTGLAEAVREMRARIREAQQA"
     gene            complement(9086..>11205)
                     /locus_tag="VD968_04135"
     CDS             complement(9086..>11205)
                     /locus_tag="VD968_04135"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF11 domain-containing protein"
                     /protein_id="HYE13614.1"
                     /translation="GNTAEWTGGAMNCNSGAITCDISGSTFSGNNATGGYGGALAFFN
                     GGVKTVTNSTVSGNTANQDGGGIVSHSGTLNLNFVTIAGNTCDNDNNGQGEGGGLQRV
                     FATVNLKNSIIADNVDKGGQSHQIYGTITSQGYNHIEGTAGGTFTPTTGDITTGDPAL
                     TALAANGGPTSTRLPAYNSPVLDTIPLGTNGCASGAGAVTKDQRGATRATDGNADGVS
                     GCDKGAAELGKLVGGIQAAAEPATYTFLSGANQVSLNVTNDGTNLDYLRVTDIAFNHP
                     NATAPVQTGKYWIISGLRSDKTTQATADYTVNLTLPYATADSLDQVCRHSGGGVWDCA
                     ATSFAANASVTRTGVSQFSDWAVGDNEAPTDLEVTKKDSVDPVPLGSSFNYELRVYNR
                     GPNVAEDVTVTDTIPAGLTVTGISMHATSDYTGAGCSFTGNTVTCSLGTMRVFDNTFD
                     GAVKKGKALVYVNVTASQAGQYTNEANVSSGAPDPNSSNNAGRQTTTVLGLSSVEVTP
                     GDVIGGANCQKATVRVTLTGIAPYDTYVEVSDDLAATTNIPASSSPAQLRIPAGQSSA
                     SLTINTVTVGAVQAGQVTASFGASASAPLTVRPNGVKWVQVSPSDIVGPGTVTATVNL
                     ECQPTEPLTVTLRSSKPFVARFVNPSNNTAANPVVVQMTTKQATFSVEAYAVDADTGI
                     NLSAQGADGVQRNVRLDVLKPTP"
BASE COUNT         1681 a         3827 c         3890 g         1807 t
ORIGIN      
        1 gacgcgcagg cgcgtcgtcc atcatctgtt tctcccccgc cccgacggcc ggtagaaggg
       61 cgggcggctc aatgtgagag ctttgacgcc tcgctcgtca accagggcca cgcggttctc
      121 gacgttcgct cggccgcgga gttcggcgcg ggccacgtcc ccggctccgt caacatcggc
      181 ctgggcgggc agttcgcctc gtgggcgggc acgctcttgc agataggcac gcccctcatc
      241 ctcgtcgccg acgccgagga gaaggttgac gaggccgtga cgcgcctcgc gcgcgtaggc
      301 cacgagaacg tgcgcggcta cctgcgcggc ggcgcgcagg agtggcgctc cgccggcttc
      361 gacctcgccg tgctcccgca ggtgacggtc gaggagttgc ggcggcggct cgaagaggac
      421 gagggcttgc aggtcttaga cgtgcgacgc cccgcggagt tcgcggccgg ccacgtcccg
      481 cgcgccgtga gcacgcctct ctcgccccgc ctgcgcgagg aggcggcccc gcgcctcgac
      541 cccgcgcgcc ccgtcgcggt cgtctgcgcg ggcggctacc gttccagcgc cgccgcgagc
      601 cttcttaaga ggcacggcct gcacaacctc ctcaacgtcg cgggcggcac cggcgcgtgg
      661 gtcgccgccg gcttccccgt cgaaaaaccc agcggagcga actagccagc agtcagactt
      721 taaagcccgg cggcgacggc ttcgcaaatt gctaggctgc cgccgccggg ctcgcctttt
      781 gcaagcctga aaacctcaaa tcctcagtaa ctcgcgcggc acgcgccttg aagaaacctc
      841 cggcgggagc gctgatgttc ccggaaggag gcgcgcgtcg ttatgtctaa aggccgggtc
      901 gtcgtcgcgg gcgggagcgg ctttctgggc cgctcgctca cggaagagtt attgaagacg
      961 gggcgcgagg tcgtcgtgct cacgcgcagc gcgcggggta agcgactgcc cgcgggcgcg
     1021 cgcgccgtcg agtgggacgg ccgcacgctc ggcccctggg cgcgcgagct tgagggcgcc
     1081 gaggccgtcg tcaacctcgc aggccgaagc gtcaactgcc gctacacggc gcggaaccgc
     1141 cgcgagatag tcgagtcgcg cgtcaactcg gtcgaagcgc tcggccgcgc cgcgcgcgcg
     1201 tgctcttcgc cgcccgccgt cttcgtgcag gccgcctcgc tcgccatcta cggcgacgcg
     1261 ggcgcgcgcg tctgcgacga gaccgcgccc gccggccacg gcttcccggc ggaagtctgc
     1321 ctgcgctggg agcacgcctt caactcgctc gacctgcccg cgacgcgcaa ggttctgctc
     1381 cgcgtcggct tcgcgctggg ccggggcggc ggcgcgctcc agacgctcgc gcgactcgcg
     1441 cggttttacc tcggcggcac ggtcggggag ggccgccagt acgtaagctg gctgcacgtc
     1501 aaagacttca accgcatcgt cctctggtgc atcgagcgcg ccgacgctga gggcgtcttc
     1561 aacgccaccg ggccctgccc cgtcactaac gccgagttca tgtgcgagct gcgcagcgcg
     1621 ctccgacgcc cctggagccc tcgcacgccc gcgtgggccg tgagggtcgg cgccttcctc
     1681 atgcggactg aggccgagct cgcgctcgcg ggccgccgct gcatccccga acgcctcgtc
     1741 gagcgcaact tcaagttcct ctacacaaac ctcgaagccg ccctcgccga catcttcacc
     1801 ccgcgccccg aggcgaagga agccgcgggg cgcgcgcgcc gccgcgcgga gaaagagagg
     1861 ctcgtactga agcggagcta aggcgccgcc gcgattgacg ccctccgccc cgtgcgttta
     1921 gcatcccttt cgtctcggaa aattttcgcg gcgcgcgcac gtgtgaggtt ccggccataa
     1981 gcggagaggt cgcactagag ctcctcgtca tcatcctcgt agcaaccttc cacggctacg
     2041 gcgcggcctg gctcgccgtg cggatgctgt tccgcccgca ccggcccgtg aaagtcttcg
     2101 gcctcaccgt ctggccgcag ggcatgatac cccgccaccg cgagcgcctc gcgcagacca
     2161 tcggcaacgc cgtcggcaac gagttggtct cgcaggagac ggtcgtccac gcgctcttcg
     2221 agaccggctt cttccagagc agggtcgagg ggctggtcgg ctcctacacc gaagacctgc
     2281 tgaaccgcaa ctacacgacc gtgctggacg cgctcccgaa gtctgtgcgc gcgcccgtgc
     2341 tcgacgcact cggcgcgttg cagctacgcg tggcagagca catcgccgcc gcgctgcgga
     2401 gcgaggagac ggccgaggcg ctcacgcgct tcgttgaccg gcgcgtggac gaggcgctcg
     2461 cgcagcgcct cggcgacgcc gtcagcgacg agacgttcga gcaggtcttg ggcttcgtcg
     2521 agaaccgctt ccgcggcgtc gtcaacgagc ccggcttcga gcagaaggtg cgcgagttcg
     2581 tctcggcccg cgttgacgac ctcgcccgca gccgcgcgac cctagccgag atgttcacgc
     2641 cgcagaccgt ggacatcatc aaagagcggg ttgaccgcga ggtgccgccc atcgtccagc
     2701 agctaacgga gattgcgacg aacaggcgga cgcgcacgca gataggcgcg ctcatcaagc
     2761 gcgaggttga cgactactac cagcagctca acttcttcaa gaagattttc atctcgcgcg
     2821 agcgcataca ccacgaggtt gacgacctcg tgaacaagac gctgccgcgc cgcgtcggcg
     2881 agtacctctc gggcgaggcg ttcgagcagc aggccgagga gttcctgaat tcgaccatag
     2941 acggcgtgct cgccaagccc gtcaacgagc tcgtcgggca gatagctccc gacaagctgg
     3001 agatgatcaa ggagcagata gccgagcgga tactctcgct cgcccgcggc gcagagcttt
     3061 cggcctccgt ctcggcctac gcgaccgacg cgctgcagcg cgtaaagccg cacacgctca
     3121 gggcgctcct ggagcacgcg cggcccgact cggccgagca gctcaagagc ttcctctccc
     3181 gcggcctgat gagcgtgctc tcgcgcgagg agacggcccg caccataaac gccatcctct
     3241 ccgcgcaggt cgagaagctc ctggtcgcgc cgcttggccg ggtcggcgac ctggtgccgg
     3301 aggataaggt caggcgcgcc agcgccgtgc tcaccgagcg cataaacgcc gcggcggccg
     3361 agcggctgcc ggcggcgata gccgagttcg acatcggcgg catcgtccgc gagaaggtct
     3421 cgggctaccc catcaagaag ctcgaagagc tcgtgctctc cgtcgccaag cagcacctgc
     3481 gaaccatcga gctcttcggc ctcctcatag gcttcgtcat cggcgtcgtc caagccgcct
     3541 acatgtacgt ccgcgtcttc tggcgctaga gccgccgcgc taaaaccccc gcccgcggtt
     3601 gcgccgcaca agcctttcgg cgcataacat taccaacccc ccggccctcg gcggactcta
     3661 attcacttcg ggccgcgcga cgctctcccc gccgcgcggg ccatttttgt caaagggagg
     3721 cggtttaaga ctttatgtta gctcgacggg tgattttggc ggcgctgctg gcgtgctcgg
     3781 cctcgggggc ggcgcgggcg caggacttca tacgctacga ccgcttcgag tcggagcgct
     3841 ccgacaggct gacgggcggg cgcgtcgagc gcgccgagtt cgagccgggc aaccccgaca
     3901 taaggctcac gctcaacgtg ccttcgttcc gcttaacact ctggcagggc gaccgcgagg
     3961 ttaagtccta ttgggtcggc gtcggcatga aggactaccc catctacatc ggagagcgcg
     4021 aggccacgca agtcatctgg aacccggcgt ggataccgcc cgcgagcgac tgggtcagca
     4081 agcgcggagg cgtgcgcccc ggcgaggtga tcaaggcgag cgacccgcgc aacccgctcg
     4141 gcaaggtcaa aatccctctg ggcgacgcct acctcattca ccaggccgcg aagacgacgg
     4201 acctggggag cctcgtctcg cacggctgcg tccgcatgct gcgctcagac ctctacgacc
     4261 tcgcggagaa gataaacgcg gctcactcct acccggtctc gccgaagagg atagcggccg
     4321 ccaagcgcgg gagccgccag ctcgtagcgc agctccccga gcccgtgccg gttgacatca
     4381 actacgacac gctcgtcgtc gagaacgggg tgctgcacat ctacccggac gtttacgacc
     4441 ggcgcacgaa caccgtcgcg cgcctccgcg cggagcttga gtcgagcggg gtgagcgcct
     4501 cggcgctcga cgacgacacg ctcaagacga tgctcgactc cgtcaagccg cgcacgcagt
     4561 tcgtcgtaga ggtctcgagc atcgagcggg gcagcgccct cgccgacggc cgcaccgaat
     4621 ccgtcctccc ccgcccagcg cgcccgcccg cgaagaggcg cgtcagggct gccgcggggc
     4681 gttgagagtt cccttcacct gttgaggtag aggttccaga ggaggcgggc ggcgactgcg
     4741 cgccaggggc gccactgctg gccgagggct tcgagctgcg ccgcggtcgg gcgcgcgggc
     4801 aatcgcttgg cctcctgcgc ggcgatttgt agggcgaggt cgcccgcggg ccatgcgtcc
     4861 ggccgcaaga gcgccctcag aaggtatatg tccgcagtcc acgggccgac gccctttatc
     4921 ttcgtaagct ccgcgcgcac cccctcgtcg ctcatgcggg cgagagcggg gatgtcgagc
     4981 ctgccttccg agacttccac ggcgagccgc cggcagtagt ctgccttctg ccggctgaag
     5041 cccgcgcgcc tgagcgcgtc gccgtcgagc gcgagaaacg attcgggcgt gagcggcgac
     5101 ggcgcgacgg cggctacgag ccgctcgtag gccgcgcgcg ccgaggcgag cgacaccatc
     5161 tgttcgagga ttatgaagac gagcgtggcg aagccttcct cgcgctccca ccactgcggc
     5221 ggcccgtgct cggagagaat gcgcgcgagg tctgggtcgc gcgccgacag ctcgcggagg
     5281 gcgcgccgca tgccggcctc cgtgagcctg gcgggcgccc cgccccgtcc cctcttcgtg
     5341 gaagacatcc ccggcgagct tttagttcga ggcgaggatt ctgcggacgt tctcggcgag
     5401 ggcgcgcgcc tcgggcagaa gctccagggc gcgcaggagt tgcgggtcgc tctcgagtag
     5461 gaagcggctt gccgcgtcgc ccccgtaggc cgcggagatg atgtcttcgc gcagccgcag
     5521 cttgacgtac tcgatttcgg cgtcgagctg cgcgggcttg aggccgctct cggggtcgcg
     5581 gcgcgcgaac tcgcggaagg ccttgacgac atcttcgctg acgggcaggt cagtcgggcg
     5641 cgggtagcgg ccaaactgcg gccccgcggt caggcggtag ctttcgagcc ccgctatctc
     5701 gccgccgatg agcctgcgga cgaagtggaa cgactcctcg aatatgcgcg agcgcacggg
     5761 cgaggtcacg tccaggggct tgacctcgta gtcgggcgcg atgccgccgc cgccgtagaa
     5821 gactcggccg gccgcagtcc gtatggcggg gccgccgggc gtgggcgtcg gcgagggcgt
     5881 ggccgtaggg gtcgggctcg cggccgtctg ccgggacggg gtctcggcgt gcgtcgggtg
     5941 cgtgggagtc tgcggcgagg gctccgcgcc cggcgcgtgt cgcgtgtagt agtcgtagat
     6001 ggagccggcc gagtagtctc gctgaatcga gcggccgtag ggcgtgtaat acttcgccgt
     6061 cgtaagcgtc agccccgcgc cgtaggggag ctgatagacc ttctgcacga gccccttgcc
     6121 gaaagaggtc tcgccgacga tgaggccgcg gccgtgatcc tgaaccgccc cggccacgat
     6181 ctcggaggcc gaggccgagt tacggttaat caggacgacg agcgggtggt caacggggtc
     6241 gcctatgttg ttcttgtact cgcgcacctc ctcgccgccg cgcccgcgca cggagacgac
     6301 cggtgcgccg cgcgccacga acttgctcgc gaccttgatg gactggtcga gcaggccgcc
     6361 ggggttgccg cgcaggtcta ggactagctg ctgcatgcct tcgcggcgga gccgttcgag
     6421 cgcgtcggtc agctcctcgg cggtcgtctg cgtgaagccg cccgtcatcc ctacgtagcc
     6481 gacgcccggc cgtatcataa agacgttgcg gatagagggc tgaggcaccg aggctcggac
     6541 tatcgtgaag tactgcgggg cggccgttcc cgcgcgctct atcttgatgg tgacgcgctc
     6601 gccctcgggg cctcggacgg ctttcgagac ctcctgcgtt gaccattcgc gcgcgtcgcg
     6661 cccgtcaacc tcgacgatgc ggtcgccgaa gcgcaggccc gcgcgcgccg cgggcgtccc
     6721 ctcgatgggc gtctgcacat agacgccgtc gcggtggcgc aggatggaga cgcctatgcc
     6781 cgtgaagcgc gactcctggt cttgaagtag gcgctggtac tcggccttcg tgaagaagtt
     6841 cgagtgcggg tcgagcgacc agagcatgcc ctgtatggcg gcctcgctcg ccttctcgta
     6901 gtcaacggcg tcaacgtagt tgtcggatat gacggagagg gcctcgttgt agtcggaggt
     6961 gacgcgcccg cccgcgcccc ccacggaggc gcgctgcgtg ccgaaggcgc ggccgccgac
     7021 gatgccgcca acgagcgccg ccgcggcgat tagggtcgcg cccgcggcgc gcacgaaagt
     7081 cttgctgctc atttctagct ccgaaccggc cggggaaggg gagacgcgca aacccgcggg
     7141 agggatttta ccaccgcccg gcggccgcgc ctaaacggcc gcgggcgcgc cggctgcggc
     7201 ctgtgctata ttcgctcgct aactatttcg ggctcccacg caagcagatg tctctatctc
     7261 tctccatcgt catcccggcc tacaacgagg cggcgcgcat aggctcgacg ctcgaagaga
     7321 ttttccgata tctcggcgaa cagaagggcg cggccgaggt catcgtcgtt gacgacggct
     7381 cctcggacga gaccgttaaa gtcacggaag gcgtgttctc ttcgcccgcg cgcgggcgga
     7441 ctgaggcgcg cgtcatacgc gtcgagccga accgcggcaa gggcaacgcc gtccgcaccg
     7501 gcctgctcgc ggcgcgcgcg cccgtcgcgc tcttctccga cgcagacctc tccaccccca
     7561 tcaccgagac ccccaagctc gtcgagccca tacgctcggg ccagtacgac gtcgtgttcg
     7621 gctcgcgcgc gctcgaccgc agtctcatag gcgtccacca gccctgggcg cgcgagcaga
     7681 gcgggcgcgt cttcaatctg ataatgaggc tggcgacggg gctgccctac tgggacacgc
     7741 agtgcggctt taaggcgttc aggatggacg tgtgccggcc cgtcgttgag ggcgctgtga
     7801 ttgaccgctt cggcttcgac gtggagctgc tctacgtcgc gcacgcggcc gggctgcgga
     7861 tgctggaata tcccgtccgc tggaacgacg tggccgggag caaggtgggc ttacgcaccg
     7921 gccttcaagg cttcggcgag ctgcggcagg ttcgacgtaa cgcgcgccgc gggctctacg
     7981 acggggccgt acgccgcgcc cgcgaggctg ccgcgcgcgc ccgcggcagc aggcccgtcc
     8041 cgcccgaaga ggcgggcccc gagagcgacg tttcgcccga gcttgccgcg cagagaatct
     8101 gaaaggcgga aggcggaagg gcggaaggca gccggttcag caccgcaaga gaagtttttt
     8161 tacagcattc tgcttcccgc cttccgcctc cttgagtttt ccgattggta cggcccgcgc
     8221 ggcggaaaat ggcgcttgcg ggcgcgcgcg ccggggctaa gcttgttgcg ttatgacggc
     8281 gaggctgaac ataaacattg accacgtggc gaccgtgagg caggcgcggc gcgcgccgga
     8341 gccgagcgtt gtggcggccg cgatgctgtg cgagcaggcc ggcgccgacg gcatcaccgt
     8401 ccacctgcgc ggcgaccgcc ggcacataca gacggacgac ctcttcacgc tccgccgcgc
     8461 cgtcaccact taccttaacg tcgagatggc cgccaccgaa gagatgatgg ctgtcgcgct
     8521 ggacgcccgc cccgacgccg tcacgctcgt cgccgagcgc ccggacgaga taacgaccga
     8581 gggcggcctc gacgttgccg agaacttcga caccgtccga cgctcggttg accgcctccg
     8641 cgaggccggc ctcttcgcga gcatcttcat agacccggaa gcgcgccaga tagaggccgc
     8701 gcgcgacgcg ggcgcgcagc aggtcgagct gtgcacggcc agctactgcg actcgacgct
     8761 cggcgcgcgc gcagtccacg ccgagggccg cgcgctcgcc gaaggggaac tcgcgcgcct
     8821 gcgcgaggct gcggcgctcg ccgcgcagta cggcctgcac gtcgccgcgg gccacggcct
     8881 aacctaccgc aacgtcggcg ccgttgcctc gatacgcgag atcaccgagt tcaacatcgg
     8941 ccacaacgtc atagcgcgcg ccgtcctcac cggcctcgcc gaagccgtcc gcgagatgcg
     9001 cgcgcgcata cgcgaggcgc agcaggcgta accgcccgaa tcacggaagc cccggcgagg
     9061 cgcggcgaga tgcgcgaggc ccgccctaag gcgtgggctt cagcacgtcg agcctcacgt
     9121 tcctctgcac gccgtccgcg ccctgcgcgc ttaggtttat ccccgtgtcg gcgtccaccg
     9181 cgtaggcctc aaccgagaat gtggcctgct tcgtcgtcat ctgcacgacg acggggttcg
     9241 cggcggtgtt gttcgagggg ttaacgaacc tcgccacaaa cggcttgctc gaccgcagtg
     9301 tgaccgtcag gggctcggtc ggctggcatt cgaggttgac cgtggccgtg acggtgccgg
     9361 ggccgacgat gtcggacggc gagacctgca cccacttcac gccgttcggt ctgaccgtca
     9421 gcggtgcgga cgccgacgcg ccgaagctcg ccgtcacctg acccgcttgg actgcgccga
     9481 cagtgaccgt gtttattgtc agcgaggccg acgactgccc cgccgggatg cggagctgcg
     9541 cgggcgagga cgaagcgggg atgttcgtcg tggccgcgag gtcgtcagag acctcgacgt
     9601 aagtgtcgta tggggctatg cccgtaagcg tcaccctgac cgtcgccttc tggcagttgg
     9661 cgcccccgat gacgtcgccg ggcgtgacct cgacggagga gaggccgagc accgtcgtcg
     9721 tctgccgccc cgcgttgttc gaggagttgg ggtcgggcgc gccgctggag acgttggcct
     9781 cgttcgtgta ctgcccggcc tgcgaggccg tgacgttgac gtagacgagc gccttgccct
     9841 tcttcaccgc gccgtcgaag gtgttgtcga agacgcgcat cgtgcctaag gagcaggtga
     9901 ccgtgttgcc ggtgaacgag cagcccgcgc ccgtgtagtc ggaggtggcg tgcatggaga
     9961 tgccggtgac ggtcaggccg gccgggattg tgtcggtgac ggtgacgtct tcagccacgt
    10021 tagggccgcg gttgtagacg cgaagctcgt agttgaagga ggaacccagg gggaccgggt
    10081 caaccgagtc tttcttcgtt acctccaagt cggtgggggc ctcgttgtcg ccgacggccc
    10141 agtcggagaa ctgcgagacg cccgtgcgcg tgaccgaggc gttcgccgcg aagctcgtgg
    10201 ccgcgcaatc ccacacgccg ccgccggagt gccggcagac ctggtcaagg gagtcggccg
    10261 tggcgtaggg cagggtcagg ttgacggtgt agtcggccgt cgcctgcgtc gtcttgtccg
    10321 agcgaaggcc ggagataatc cagtacttgc ccgtctgcac cggcgccgtc gcgttggggt
    10381 ggttgaaagc gatgtcggtg acgcgcaggt agtcgaggtt cgtgccgtcg ttcgtgacgt
    10441 ttaggctcac ctggttggcg ccgctcagga acgtgtaggt cgccggctcg gccgcggcct
    10501 gaatgcctcc gacgagcttg ccgagttcgg ccgccccctt gtcgcagccc gacacgccgt
    10561 cggcgttgcc gtccgtcgcg cgcgtcgcgc cgcgctggtc tttggtgacg gcgccggcgc
    10621 ccgacgcgca gccgttcgtg ccgaggggga ttgtgtcaag tactgggctg ttgtaggccg
    10681 ggaggcgggt gctggtcggc ccgccgttgg ccgcgagggc ggtgagcgca gggtcgcctg
    10741 ttgtgatgtc gccggtggtg ggggtgaagg tgccgcccgc cgtcccctcg atgtggttgt
    10801 agccctgcga ggtaatcgtg ccgtagattt ggtgcgactg gccgcccttg tcaacgttgt
    10861 cggcgatgat gctgttcttg aggttgaccg tggcaaatac ccgctggagg ccgccgccct
    10921 cgccctgtcc gttgttgtcg ttgtcacagg tgttgcccgc gatggtgacg aagttcaggt
    10981 tgagcgtgcc gctgtgtgac actatgccgc cgccgtcctg gttcgcggtg ttcccgctga
    11041 cggtcgagtt ggtgacggtc ttgacgccgc cgttgaagaa cgccagcgcg ccgccgtagc
    11101 ctccggtcgc attgttgccg ctgaaggtgc tgccggagat gtcgcaggtg atggcgccgc
    11161 tgttgcagtt catcgcgccg cctgtccact cggctgtgtt gccgg
//
LOCUS       DASPKR010000145        18961 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_147686, whole genome shotgun sequence.
ACCESSION   DASPKR010000145 DASPKR010000000
VERSION     DASPKR010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 18961)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18961)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18961
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147686"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(148..1686)
                     /gene="atpD"
                     /locus_tag="VD968_04140"
     CDS             complement(148..1686)
                     /gene="atpD"
                     /locus_tag="VD968_04140"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HYE13615.1"
                     /translation="MSTPNGNSAGNARPLGRVVQVIGPVLDVEFGDGYLPSIYTALRV
                     TSEGFDVPSPIDIIAEVEQHLGEGRVRTVSMQPTEGVVRGMTVIDTGGPITMPVGETT
                     LGRVLNVIGQPVDNLGPVNSEQRYPIHRHAPTLDEQSTELQMFETGIKVVDLIQPFLR
                     GGKIGLFGGAGVGKTVLIMELINNVAMKHSGFSVFAGVGERTREGNDLLREMVESKVI
                     NFGESFYENWEKTGNFDMTKVDMNAIGQSKVALVYGQMTEPPGARLRVALSGLTVAEY
                     FRDQGLDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPNLATEMGELQERITSTRT
                     GSITSIQAVYVPADDYTDPAPATTFAHLDAVTALSRQIVELGIYPAVDPLASTTRILD
                     PRIVGEAHYNTAQSVKQILQRYKDLQDIIAILGLDELSEEDKLVVSRARKIQRFFSQP
                     FHVAEQFTGLQGKFVPIADTIRGFQEIVDGKHDDLPERAFYLVGSIEEAREQAERIAR
                     EVGE"
     gene            complement(1831..2127)
                     /locus_tag="VD968_04145"
     CDS             complement(1831..2127)
                     /locus_tag="VD968_04145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13616.1"
                     /translation="MEINDEAKEIVQELGAAINSAVERSSEVAGAIERLREAGYDMEL
                     TLRLEIGLRRNSPDDEDDDGDVASSPSSSAARLELTDEDRQTLRSMKIRFDEPD"
     gene            complement(2277..3365)
                     /locus_tag="VD968_04150"
     CDS             complement(2277..3365)
                     /locus_tag="VD968_04150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13617.1"
                     /translation="MFLGPSFFARLPLFSGISVSAPARHERPSARRARPNAAAEAARA
                     RIKEARRLLEASPARSTDAVTLAVEGGSGVHLLRLRKEEFLREGGETVAVSSLGETLR
                     VSVVRPNYVNTSVRVTGAGGRELRPLLVQYPIERNGALSEVAYYASAHPAASSDATAR
                     AGGEYVRTMLDEAAARLAGKGKTISPDVVDVAERLCFVEHADHKRFMTEDRGALFSEI
                     QTLYALNAGDTYRYSVSSAGAGGMVQMIPSTYDMVRRLHPSAGLKEDFVEGMRDHSNA
                     LEAMLLYMQGTWDDLLRSEDVVAALSTGTATQAELLAAGYNSNPARLPRYLRAGGDAW
                     RQLIPSETQMYLRIYASVESLVGFEDRS"
     gene            3652..5271
                     /locus_tag="VD968_04155"
     CDS             3652..5271
                     /locus_tag="VD968_04155"
                     /inference="COORDINATES: protein motif:HMM:TIGR00641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HYE13618.1"
                     /translation="MSTKTDAAGRERRAAFETPSGIKLPNDFNPSNTEPPDYERDLGA
                     PGEFPFTRGVRRSMYRGRLWTMRQYAGYATAEESNARYKFLLSQGTTGLSVAFDLPTQ
                     IGLDSDDPLAAGEVGKVGVAIDSVEDMERLFDGIPLGSVSTSMTINATASTLLCLYIA
                     VARRQGVPADKLQGTVQNDILKEYIARGTYIYPPAPSLRLVTDTFAYCAAEVPNWNTI
                     SISGYHIREAGSTAVQEVAFTLADGVAYVEAATAAGLRVDEFAPRLSFFFNAHNNLLE
                     EVAKYRAARRLWARLMRDRFGARDPRSMMLRFHTQTAGSTLTAQQPEVNVVRTTIQAL
                     AAALGGTQSLHTNAMDEALALPTEQAARLALRTQQVIAYESGVADTVDPLAGSYAVEH
                     LTSEIERLALGYIEKIDAMGGMLRAIETGYVQREVQEAAYQYQRAVETGDSVVVGVNR
                     FRSEDDAGVPTLRIDPSVEQAQVERVRSLRERRDAERTEVALTLLEDAARGTENLLPR
                     ILACVEALATVGEISNRLRRVWGEYREAVTL"
     gene            5303..5761
                     /locus_tag="VD968_04160"
     CDS             5303..5761
                     /locus_tag="VD968_04160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13619.1"
                     /translation="MNKKLIAAALLACLAPGAPAVTRAQSADGPEAVARDFYEWYTGR
                     LDSEDFSPLKRRREALRYLTPEFHRRAPRIIADEMVDIFICAQDWQPGWGDDIKFSAG
                     PVRGSRAQVTATFNYGPENQASVRLTLRRAAGRWRIDGADCLGPSGDPAP"
     gene            5800..6846
                     /locus_tag="VD968_04165"
     CDS             5800..6846
                     /locus_tag="VD968_04165"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE13620.1"
                     /translation="MTHLLEVKNLRTHFQTRAGLVRAVDGVSFHLGEGELLGLVGESG
                     CGKSITALSVMRLVGAPGKIVGGEVWFGGENLLLASEERMREIRGDDIAMIFQDPMTS
                     LNPVFTVGEQIAEALRLHRGLSRAQAREAAVEAMREVAIPDPARRADDYPHQLSGGMR
                     QRVMIAMALACDPKLLIADEPTTALDVTIQAQILELIDGLRRTRNLAVLLITHDLGVV
                     AEVADRVAVMYTGRIVEESPVGELFARPKHPYTEGLLNSVPKLTAAGVGKAERLSTIE
                     GVVPKPTNLPEGCHFAPRCPRRMPRCTEGDIPLYQLEGGVSVRCVLYDLTAAVAADRE
                     IGRAPGGGFVGSQG"
     gene            6830..7885
                     /locus_tag="VD968_04170"
     CDS             6830..7885
                     /locus_tag="VD968_04170"
                     /EC_number="7.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017953348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HYE13621.1"
                     /translation="MEARANERGQTVPRAEAAAARAREGGREELVRVRGLFKHFPVKD
                     SDDVVRAVDGVTFEIFRGETLGLVGESGCGKSTVGRCLLRLIEPTRGEIRFGGEDVLS
                     MSGGDLRRLRREMQIIFQDPYASLNPRMRVRDIVAEPLVIHGIGGRAERRERVADLLK
                     KVGLDPDYMNRYPHEFSGGQRQHIGIARALALNPKLIVADEPVSALDVSVQAQVINLL
                     EDLQKEFDLTYLFISHGLAVVEHISDRVAVMYLGRIVEVASAEELYANPLHPYTRALL
                     SAIPVPDPTRKRERIVLKGDVPTPINPPSGCRFHTRCPDAVPECSQVDPDLREVTPGH
                     TVACIRVPGWHDAPTAA"
     gene            8057..9043
                     /locus_tag="VD968_04175"
     CDS             8057..9043
                     /locus_tag="VD968_04175"
                     /inference="COORDINATES: protein motif:HMM:NF016764.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YIP1 family protein"
                     /protein_id="HYE13622.1"
                     /translation="MIRRTYAYIVFGAGALLVVAGLLKLLPGSVGAGAALCFLGLAFF
                     GLSFVPHRPPEDRHARSAGAEVGGVEVPAPPAPAAPPPMPFLARLTGMFFEPSQVFKN
                     LRWHPRWLAPLVVIVLLNFVYATAFTQRLTPERIVNFTTDKVIQSFNLPHDQAEAMKR
                     EQIDAMKSPPRVALGAVGQFVGAFVLMCILAGLALLAVLLLGGSIGFWQALSVLAHAT
                     LPAAIIERALSLVILYLKAPEDIHPVLGQQGLVTDNLGALFNPAQNPVLFSAASFIGV
                     LAFYRLWLTATGLRNGSTRVSSGMAWTVAVGFWAVGLLFAIAMSALFPQFIS"
     gene            complement(9156..9917)
                     /locus_tag="VD968_04180"
     CDS             complement(9156..9917)
                     /locus_tag="VD968_04180"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE13623.1"
                     /translation="MSDATLTTPEPSALAPGDLLAHDAVPASLISMRDIWRTYQMGSE
                     ELHALRGVSFDVQRGEYLAIIGPSGSGKSTLMNLIGCLDTPTRGRYWINGKLVSDMED
                     DELARIRNQEIGFVFQTFNLLARATALHNVELPLIYAGISAAERREKAKQALASVELS
                     DRMTHRPNELSGGQRQRVAIARALVNHPSILLADEPTGALDTKTSHEIMALFERLHAE
                     GNTIIVVTHEHDVAARAHRVISIRDGQIEKDERIK"
     gene            complement(9914..11491)
                     /locus_tag="VD968_04185"
     CDS             complement(9914..11491)
                     /locus_tag="VD968_04185"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HYE13624.1"
                     /translation="MAVSRKKKVIIAVAAVAVLAMIVVISIFARGTDQPEVTVVKVEV
                     RPELKSTVTASGEVRPIRFVNLTSEVQGRIVEISVNPGDPVTTGQPLVRVDPTQLESS
                     AAAAAASAQAAISDVQNARTAVLSAENNVAQQQQTLASAEVALAQSRQAVNTAQTSVD
                     REQVNLAAAQRELKRTTELIESGVASRSQYDLAQDNYKQAQVALKTAQAQLESAKIAV
                     EESKARVNAARVGVRDAQIGVQRARQSVSSSEARANQQQAILRGESSLSRKSVTLSPL
                     TGVVVDIPARVGQFTLASTSTTSLMTIADMTTINVEVNVDETEISQVEVGQSAKVKVD
                     AMGERDIEGTVTQKNPLAVSRSDMQGGGITNRVNVQEAKEFKVVIELKNMPDDVRKAL
                     RPGMTSTATITTKTKQNVVAVPLQAIVEKQPTPQPTPAGGGAQQPAAPAQPPGEKPKD
                     IKGVYVMDGNKVKFVPVETGITGESDIEIVSGLSAGLEVITGPSRVLRTLKEGDAVKR
                     QEKKPGGPGDQGEADKK"
     gene            11868..12482
                     /locus_tag="VD968_04190"
     CDS             11868..12482
                     /locus_tag="VD968_04190"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HYE13625.1"
                     /translation="MIACERCHTENLDGAQYCDECGAVLSVASAPPLPSPAQDGGGAA
                     ASASGVAGPQPAPPAPAFSPARTSLSSRQQQSLPRAAEGKSGALGGEGGPHAKLVIHR
                     GRSVGKEFMLSDDESHIGRWDADGGIFPDVDLDADDPEAKVSRRHARITRRAGQYFIE
                     DLGSTNGTFVNRGRRLLPGDRQQLRDGDEVIVGKTFLRFHVLGG"
     gene            12570..14525
                     /locus_tag="VD968_04195"
     CDS             12570..14525
                     /locus_tag="VD968_04195"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE13626.1"
                     /translation="MLSCQHCGAAVASEDRFCGNCGLALASTGQQSPPAAARASGHGG
                     PDDPSRHFRESVRAATGEPLSVSGEIGQRPSAEQLQPTLIETPSPFAEGFDADQEDDL
                     DTAAPDEPEGEAAAAEATGDALPDAPTPAHETPAAAEPAPPAWEPAPFSAGEQTGAGA
                     SPALDPEDSPGTAARPSRQTGDVPPRPSGSRTGGSRRASSQLEPGTLLYGRYEIVKRI
                     GGGGMGAVYYAKDKNLGDAPRAVKEMIQSHLDESQQEKAIADFKRESMLLASLEHPSI
                     PTIYDYFYDDTASRFYLVMKYISGGDCLARLRNAPGGRIDELTVTDWGTQTADVLHYL
                     HSQRPPIIYRDLKPANLMIDGNTGRVMLIDFGIARWVQKEEKGVTAVGTMGYAPPELF
                     SGKVEPRSDIYSLGATMFHLLTGSDPQDNPLLIFDFTKNPAPRQINPGISNEMERILM
                     RTVEYEPERRFVSAAELRAALATHTERLRAGSVTYGVVAGVSPQGGAAQTLAVEMVYC
                     GFCGKTISSEDVFCAHCGARQPIAAASASLRAARSTARLVVTGTTELDATFPLSKESN
                     LVGRTDPQSNIFPDIDLSRFDPETKISRRHARIWREGETFLLEDLGSVNGTVVNDAVR
                     LGPRQPRPLASGDRLRLGETTLHFLIG"
     gene            14593..15114
                     /locus_tag="VD968_04200"
     CDS             14593..15114
                     /locus_tag="VD968_04200"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HYE13627.1"
                     /translation="MSVRLEQKATASAAPAPAVAARPPGPRPEVNFERLRAPFSLRCG
                     AVLIDYILLVGLLAFATLLARLFDDTGRGAGPFLTVGYAAVVMVAAINLVLLPGLSGR
                     TLGKWVAGLRVERLDGVPLSFGRALLRHLAGYPLTLLTLGLGFLLAAFNSRGRALHDL
                     LAGTVVVRARRSR"
     gene            15142..16722
                     /locus_tag="VD968_04205"
     CDS             15142..16722
                     /locus_tag="VD968_04205"
                     /inference="COORDINATES: protein motif:HMM:NF024821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13628.1"
                     /translation="MRSLCPSCGAETFAGARFCRRCGAAVRAAEVDAEVSPTAGTVPL
                     TGEPSRTTDSLGGDEKNLSPATSRVSRAELERILKTEAPPPQQHSAVTRPGAAARLAD
                     GDDAEATLVSPPIDEATRPAFGVDFDEELTITVPRPAPAAESAAEGGDEHDGRAVETV
                     SPRQQSPQQPRRRAWPFVLAASFAVLLFATAAGWFAYRYLRGPSRPAAGAAGPVAPPA
                     PDARQLFEEKLAEAEGLLAQGDITAAMARLREANSLDPANTRARLRLGELLWDTGARR
                     EAIEELRAASRSSPEDFTVWRRLATAQFAEGLYADAAESYRRLIALAGAGAADPNDLL
                     SYADALRNSGRAEEAAAVYKRLASGPAHDFAELARVRLGELAQPTPQPTPTPRREEPG
                     VQEGGEVASSTTTEPAAPAQQQQATPTPQPTPAPQRPPAQQQLTPAEHYRRGVELWSS
                     NRAAAFAEFQAAAGGGVVDANYYLGLSYVEGKNPRALNRAALLAALRHFQIAQRGQFA
                     EQSRRYARQLEQEFDRTR"
     gene            16796..18517
                     /locus_tag="VD968_04210"
     CDS             16796..18517
                     /locus_tag="VD968_04210"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HYE13629.1"
                     /translation="MPELVVNYPDRGPDNFTLGRLRITIGRSARNDLCVPDPFASRVH
                     AEVRREGDQYLLQDLGSANGTYYNGSRLEGTVPLTHGGRIQIGETEIVFNDRSADALN
                     AATTFEEEGDADAPLPEATIAFDSAHHTTSGLLEAIEGARTQTSGRYAAQAVVPQRAT
                     DHGDLLALISKVGVTLLASATLDETLREVARLVFDAVPAERCLIMLRDEQAGDLRVRA
                     AEMRDRGTDVGEVRVSRTIVEEVVNQGRSVLTSDAQHDPRFKSSTVTFQGIRSVLAVP
                     LGVGDRVFGMIYADSPLTESRFTEDHLKVLTTLGSVAAIRVENTRLLEEHLEQERFER
                     EMQLAREIQQRFQPTAPPAVAGYELQGISFPSYQIGGDYYDFILCTDRRLVVALGDVS
                     GKGTSAALLMSSLHAAVHAQVASCRPLTETISAVNRYLADNTPPNRFVTLFYAELDAV
                     TGSLSFINAGHNPPLIAHSGGTTEQLGAGGLPLGILPDFDYREGRTQLQPGDVLVAYS
                     DGVTEQQNPSGEEFGTARLQEVIERNIDRSAAAIRDKIEAALSAFAQGTPAGDDITLL
                     IVKRAKA"
     gene            complement(18525..>18961)
                     /locus_tag="VD968_04215"
     CDS             complement(18525..>18961)
                     /locus_tag="VD968_04215"
                     /inference="COORDINATES: protein motif:HMM:NF026066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HYE13630.1"
                     /translation="ERLATLMEIRGDDRFRVRSYRNASEVIETWPTPLRVIAEEEGAR
                     GLQALPGVGKAISGKIVELLERGTFEAWEKLKAETPESVLDLLKVEGVGIKTASALYQ
                     QFKVSSLEDLRQFVEGGGLDLLDNVGEKTAERVRASVSRLLR"
BASE COUNT         2965 a         6547 c         6381 g         3068 t
ORIGIN      
        1 cccggcaccg tcaccgagtc cacctgctcc gacagaagcc gccgctgcgg cgtgatgaca
       61 tcgagttgga gagccataag agaagtgatg agtgcggggc gcgtggtgca gaacttttaa
      121 ttcagcaccc cgcaccccgc acttggttta ttccccgact tcgcgggcga tgcgctcggc
      181 ctgctcgcgg gcctcttcga tggagccgac gaggtagaag gcgcgctcgg gcaggtcgtc
      241 gtgcttgccg tcgacgatct cctggaagcc gcggatggtg tcggcgatgg ggacgaactt
      301 gccctggagg ccggtgaact gctcggcgac gtggaagggc tgcgagaaga agcgctgaat
      361 cttgcgcgcg cgcgagacga ccagcttgtc ctcttccgag agttcgtcga ggccgaggat
      421 ggcgatgatg tcctgcaggt ccttgtagcg ctggaggatc tgcttgacgg actgcgccgt
      481 gttgtagtgg gcctcgccga cgattctcgg gtcgaggatg cgcgtggtcg aggccagcgg
      541 gtcgacggcc gggtagatgc ccagctcgac tatctggcgc gagagcgccg taacggcgtc
      601 gaggtgcgcg aacgtcgttg ccggcgcggg gtctgtgtag tcgtcggccg gcacatagac
      661 ggcctgaatc gaggtgattg agccggtgcg cgtcgaggtg atgcgctcct gtaattcgcc
      721 catctcggtc gcgaggttcg gctggtagcc gacggccgag ggcattcggc ccaggagcgc
      781 cgagacttcc gagccggcct gcgtgaagcg gaagatgttg tccacgaaga ggagcacgtc
      841 gaggccctgg tcgcggaaat actctgcgac cgtcaggccc gagagcgcga cccgcaggcg
      901 cgcgcccggc ggctccgtca tctgcccgta aacgagcgca accttcgact ggccgatggc
      961 attcatgtcc accttcgtca tgtcgaagtt gccggtcttc tcccagttct cgtagaacga
     1021 ctcgccgaag ttgatgacct tcgactcgac catctcgcgc agcaggtcgt tgccctcgcg
     1081 cgtgcgctcg ccgacgcccg cgaagaccga gaagcccgag tgcttcatgg cgacgttgtt
     1141 aatgagctcc atgatgagca cggtcttgcc gacgccggcg ccgccgaaca ggccgatctt
     1201 gccgccgcgc aggaagggct ggatgaggtc aacgaccttg atgccggtct cgaacatctg
     1261 caactcggtg gactgctcgt cgagcgtggg cgcgtggcgg tgtatcgggt agcgctgctc
     1321 ggagtttacg gggccgaggt tgtcaacggg ctggcctatg acgttgagga cgcgcccgag
     1381 ggtcgtctcg ccgacgggca tcgttatcgg cccgcctgtg tctatgacgg tcatgccgcg
     1441 caccacgccc tcggtgggct gcatcgagac ggtgcggacg cgcccctcgc ccaagtgctg
     1501 ctcgacctcg gcgatgatgt ctatgggcga cggcacgtcg aagccctcgc tcgtgacgcg
     1561 caaggccgtg tagatggacg gcaggtagcc gtcaccgaac tcgacgtcta agacggggcc
     1621 gatgacctgc acgacgcgcc ccagcgggcg agcgttgccg gccgagtttc cgttaggcgt
     1681 ggacatactt ctcttagtgc tcctctagtt tgataaagcc gtcggaaggc gagttaatgc
     1741 gctgttttgt aagctgaaaa ggtaacacaa ggcgcggccg cgtggcaaaa ggcggggccg
     1801 gaacgggcgg gagggtcggc gggcgaacct ttaatcaggc tcgtcgaagc ggattttcat
     1861 gctgcgcaac gtttggcggt cttcgtcggt gagctccaaa cgggccgcgg aggatgatgg
     1921 cgaggaggcg acgtcgccgt catcgtcttc gtcgtcgggt gagttccggc gcaggccgat
     1981 ctccaggcgc agggtcagct ccatgtcgta gccggcctcg cgcagccgct cgatggcccc
     2041 ggcgacttcg gaggagcgct cgaccgcgga gtttatggcc gcgcccagct cctgcacaat
     2101 ctctttggcc tcgtcgttaa tctccaaacg cgcgtctctc taaagagaaa aatcagggag
     2161 agggtgatgc tacgccagcg ccaatcggcg gtcaaccaca cgggttagaa aagcgaagag
     2221 gtgcgggtga cggcagcgct gccgtcaccc gcacctcttt aaatccgcac tctacattat
     2281 gatctgtcct cgaagcccac gaggctctcg accgaggcgt agatgcgcag gtacatctgc
     2341 gtctcggagg ggattagctg ccgccaagcg tcgccgccgg cgcggaggta gcggggcagg
     2401 cgcgcggggt tcgagttgta gccggccgcg agaagctcgg cctgcgtcgc agtccctgtc
     2461 gagagggccg cgacgacgtc ttcgctcctg agcaggtcgt cccaagtccc ctgcatgtag
     2521 agcagcatcg cttcgagcgc gttcgagtgg tcgcgcatgc cttcgacaaa gtcctccttg
     2581 aggccggccg aggggtgcag gcgccttacc atgtcataag tcgagggtat catctgcacc
     2641 atgccgcccg cgcccgcgga gcttacggag tagcggtagg tgtccccagc gtttaaggcg
     2701 tagagagtct ggatttcgct gaagagggcg ccgcggtctt ccgtcatgaa gcgcttgtgg
     2761 tcggcgtgct ctacgaagca gagccgctcg gccacgtcaa ccacgtcggg cgagatcgtt
     2821 ttgcccttgc ccgccagccg cgccgcggcc tcgtccagca tcgtgcggac gtactcgccc
     2881 ccggcgcgcg ccgtcgcgtc gctcgaagcg gccgggtgcg cggaggcgta gtaggcgact
     2941 tcggagagcg caccatttcg ctcaatcggg tactgaacga gcaggggccg aagctcgcgc
     3001 ccgcccgcgc ccgtcacgcg caccgacgtg ttgacgtagt tgggccgaac gacgctcacc
     3061 ctgagcgtct cgccgagcga ggagacggcg accgtctcgc ccccctctct caaaaactct
     3121 tccttccgaa gcctgagcag gtgaacccct gagccgccct cgacggccag cgtcaccgcg
     3181 tcggtcgagc gcgccgggga cgcttcgagc aggcggcgcg cctccttgat gcgcgcgcgg
     3241 gcggcttcgg ccgcggcgtt cgggcgggcg cgccgcgccg acggtcgttc gtgccgcgcc
     3301 ggggcggaaa cggatatgcc ggagaagagg gggagccgtg cgaagaagct gggcccaaga
     3361 aacacgaata tcgggagaac agaaaaaagc gtctttctca tcgtatgcga gggtctcgat
     3421 tgtccgaacg attattgtga aacccggcgt gaccggaaga agttttgcag tccatctgac
     3481 gtgcgcggcg ccctttccgt tgcttcgcgc ggggcgttca atttggcgca gggtaagcgc
     3541 acacacgggc gggcgccggg gcgcacagaa agcgtccgtt gcccgcgggc ggggcgtgtg
     3601 ctaggctcgg aaaaaaaggt acgctcgcct acaaaagaag gtggccgaag tatgagcacg
     3661 aagacagacg ccgcgggccg cgagcggcgc gcggcgttcg agacgccctc cggcataaag
     3721 ctcccgaacg acttcaaccc gtcgaacacg gagccgcccg actacgagcg cgacctcggc
     3781 gcccccggcg agttcccttt cacgcgcggc gtgcgccgca gcatgtaccg cggccgcctc
     3841 tggacgatgc gacagtacgc cggctacgcc acggccgagg agtcgaacgc ccgctacaaa
     3901 ttccttctct cgcaaggcac gaccggcctc tcggtcgcgt ttgatttgcc gacgcagatc
     3961 ggcctcgact ccgacgaccc gctcgcggcc ggcgaggtcg gcaaggtcgg cgtcgcgatt
     4021 gactcggtcg aggacatgga gcgcctcttc gacggcatcc cgttaggctc cgtctcgacc
     4081 tcgatgacga taaacgcgac ggcctcgacg ctgctctgcc tctacatagc agtcgcgcga
     4141 cggcagggcg taccggccga caagcttcag gggacggttc agaacgacat actcaaggag
     4201 tacatcgcgc gcggcaccta catctacccg cccgcgccct ctttgcggct agtcacagac
     4261 accttcgcct actgcgccgc cgaggtgccg aactggaaca ccatctccat ctccggctac
     4321 cacatacgcg aggccggctc taccgccgtg caggaggtcg ccttcacgct ggccgacggc
     4381 gtcgcctacg tcgaggcggc cacggccgcg ggcctgcgcg ttgacgagtt cgccccgcgc
     4441 ctctcattct tcttcaacgc gcacaacaac cttctggaag aggtcgcgaa gtaccgcgcc
     4501 gcgcgcaggc tctgggcccg tctcatgcgc gaccgcttcg gcgcgcgcga cccgcgctcg
     4561 atgatgctca ggttccacac gcagacggcc ggctctaccc tgacggcgca gcagccagag
     4621 gtcaacgtcg tccgcacaac catccaggcg ctggccgcgg cgctgggcgg cacgcagtcg
     4681 ctccatacga acgcgatgga cgaggcgctg gccctgccga ccgagcaggc agcccggctc
     4741 gccctgcgca cgcagcaggt catcgcctac gagtcgggcg tggccgacac ggttgacccg
     4801 ctcgctggct cctacgccgt cgagcacctg acgagcgaga ttgagcggct cgcgctcggc
     4861 tacatcgaga agatagacgc gatgggcggg atgttgcgcg ccatagagac gggctacgtg
     4921 cagcgcgagg tacaggaggc ggcctaccag taccagcgcg ccgtcgagac gggcgactcg
     4981 gtcgtcgtcg gtgtcaaccg cttccgctcc gaggacgatg cgggcgtccc gacccttcgc
     5041 atagacccgt cggtggagca ggcgcaggtc gagcgcgtcc gctccctgcg cgagcgccgc
     5101 gacgccgagc gcacggaggt cgccctcacc ctcctcgaag acgccgcgcg cggcaccgag
     5161 aacctcctgc cccgcatact cgcatgcgtc gaggcgctcg ccaccgtcgg cgagatcagc
     5221 aaccgcctcc gccgcgtctg gggcgagtac cgcgaggccg tcaccttgta gcgaaccctt
     5281 aaacgacacc ggggaatcac ctttgaataa gaaactcatc gccgccgcgc tgctcgcgtg
     5341 cctcgcgccg ggggcgccgg ccgtaacccg cgctcagagc gccgacgggc cggaggcggt
     5401 cgcccgcgac ttctacgagt ggtacacggg caggctcgac agcgaagact tcagcccgct
     5461 caagcggcgg cgcgaggcgc tgcgctactt gacgcccgag ttccaccgcc gcgcgccccg
     5521 catcatcgcc gacgagatgg ttgacatatt catctgcgcg caggactggc agcccggctg
     5581 gggagacgac atcaagttct ccgccgggcc ggtgcgcggc tcgcgcgcgc aggtcacggc
     5641 caccttcaac tacggccccg agaaccaggc cagcgtgcgc ctgacgctgc gccgcgccgc
     5701 gggacgttgg aggatagacg gcgccgactg cctcggcccc tccggcgacc ccgcgccata
     5761 gtcttgtgaa gtgcgggcgg gtagaatgcc cgggctctta tgacacacct gctcgaagtc
     5821 aaaaacttgc ggacccactt ccagacgcgc gcggggctcg tgcgcgcggt ggacggcgtg
     5881 agctttcatt tgggcgaggg cgagctgctg ggattggtgg gcgagtccgg gtgcgggaag
     5941 tcaataacgg cgctgtcggt gatgcggctg gtgggcgcgc cggggaagat tgtgggcggg
     6001 gaggtttggt tcggcggcga gaacctgctg ctcgcctccg aagagcgcat gagggagatt
     6061 cgcggcgacg acatcgccat gatcttccag gacccgatga cctcgctcaa cccggtcttt
     6121 acggtgggcg agcagatagc cgaggctctc aggctccacc gcggcctctc tcgcgcgcag
     6181 gcgcgcgagg cggccgtcga ggcgatgcga gaggtggcga taccggaccc ggcgcggcgc
     6241 gccgacgact acccgcacca gctctcgggc gggatgcgcc agcgcgtgat gattgcgatg
     6301 gcgctcgcgt gcgaccccaa gctcctcatc gccgacgagc cgaccacggc gttagacgta
     6361 accatacagg cgcagattct cgaactgatt gacgggctgc ggcgcacgcg caacctcgcc
     6421 gtgctcctca tcacgcacga cctgggcgtg gtcgcggaag tcgcggaccg cgtcgccgtc
     6481 atgtacacgg gccgcatcgt ggaggagtcg ccggtcgggg agcttttcgc gcgcccgaag
     6541 cacccttaca cggaagggct tctgaactcc gtgccgaagc tgacggccgc gggcgtcggc
     6601 aaggccgagc ggctctcgac catcgagggc gtcgtgccga agccgacgaa cctgccggag
     6661 ggctgtcact tcgcgccccg ctgcccgcgc cgcatgccgc gctgcaccga aggcgacata
     6721 ccgctctacc agctcgaagg cggcgtctcg gtgcgctgcg tgctgtacga cttgacggcg
     6781 gccgtcgcgg ccgaccgcga gataggccgc gcgcccggag ggggattcgt tggaagccag
     6841 ggctaacgag agggggcaga ccgtcccgcg ggcggaagcg gctgcggcgc gcgcgcgcga
     6901 gggcgggcgc gaggagcttg tgcgcgtgcg cgggctcttc aagcacttcc ccgtcaagga
     6961 cagcgacgac gtcgtgcgcg ccgttgacgg cgtgacgttc gagattttcc gcggagagac
     7021 gctcgggctc gtcggcgagt ccggctgcgg caagtcaacc gtgggccgct gcctgctcag
     7081 gctcatcgag ccgacgcgcg gcgagattcg ctttggcggc gaggacgtgc tctcgatgtc
     7141 gggcggggat ctgcggcgcc tgcgccgcga gatgcagata atattccagg acccttacgc
     7201 gagcctcaac ccgcgcatgc gcgtccgcga catcgtcgcc gagccgctcg tcatacacgg
     7261 catcggcggc cgcgccgaac gacgcgagcg cgtcgcagac ctgctcaaaa aagtcggcct
     7321 cgaccccgac tacatgaacc gctacccgca cgagttctcc ggcgggcagc ggcagcacat
     7381 aggcatcgcg cgcgcgctcg ccctgaaccc gaagctgata gtggcggacg agccggtctc
     7441 ggccctcgac gtgtccgtgc aggcgcaggt catcaacctg ctcgaagacc tgcaaaagga
     7501 gttcgacctc acctacctct tcatctcgca cgggctggcc gtagtcgagc acatctccga
     7561 ccgggtcgcc gtcatgtacc tcgggcgcat cgtcgaggtc gcctcggccg aagagctcta
     7621 cgcgaaccct ttgcaccctt acacgcgggc actgctctcg gccatacccg tcccggaccc
     7681 gacgcgcaag cgcgagcgca tcgtcttgaa gggcgacgtg ccgacgccta taaacccgcc
     7741 ctccggctgc cgcttccaca cgcgctgccc cgacgccgtc cccgagtgct cgcaagttga
     7801 cccagacctg cgcgaggtca cgcccggcca caccgtcgct tgcatacgcg tccccggctg
     7861 gcacgacgcg ccgacggcgg cgtaaggaag tggccggtta aaaaaacttc tcctgtccag
     7921 cctctagccc ctagcctctg tctttgaaac cctgagtttc gcggccgcgt aaatttagca
     7981 gcccgccggt gcggcatctt cagaagggaa gccggagggc gctctctcat cccgaaacga
     8041 agtgaggaat ctccccttga tacgtcgcac ttacgcgtac atcgtcttcg gcgccggcgc
     8101 cctgctcgtc gtcgcggggt tgctgaaact cctgccaggg agcgtcgggg ccggggccgc
     8161 gctgtgcttc ctgggcctgg cctttttcgg gctgagcttc gtcccgcacc gcccgccgga
     8221 agaccggcac gcccgctcgg ccggcgccga ggtcgggggc gtcgaagtcc cggccccgcc
     8281 cgcgcccgcc gcgccgccgc cgatgccgtt cttagcgcgg ctcaccggca tgttcttcga
     8341 gccgtcgcag gtcttcaaga acctgcgctg gcacccgcgc tggctcgcgc cgctcgtcgt
     8401 catcgtgctg ctgaacttcg tctatgcgac ggccttcacg cagcgcctga cgccggagcg
     8461 catcgtcaac ttcacgaccg acaaggtgat ccagagcttc aacctcccgc acgaccaggc
     8521 ggaggcgatg aagcgcgagc agatagacgc gatgaagtcg ccgccgcggg tcgcgctcgg
     8581 cgccgtcggc cagttcgtcg gcgcgttcgt cctcatgtgc atactggcgg ggctcgccct
     8641 gctggccgtc ctgctgctcg gcggtagcat agggttctgg caggcgctct cggtgctcgc
     8701 gcacgccacg ctgccggccg ccatcatcga aagggctctg agcctcgtca tcctttacct
     8761 caaggccccg gaagacattc accccgtgct cggccagcag gggctcgtga ccgacaacct
     8821 cggcgcgctc ttcaacccgg cgcagaaccc cgtgctcttc tcggccgcga gcttcatagg
     8881 cgtcctcgcc ttctacaggc tgtggctgac ggcgacgggc ctgcgcaacg gcagcacgcg
     8941 cgtcagctcc ggcatggcct ggacggtcgc cgtaggcttc tgggccgtcg gcctcctctt
     9001 cgccatcgcc atgagcgcgc tgttcccgca gttcatctct tagagcaggg atagccgcag
     9061 aggctcagag ataagaaggc agaaggaaga aggcagccga agaattcccc gactgccttc
     9121 ttccctctgt gcctatcccc tccgcgcgtt aaagcttact ttatcctctc gtccttctcg
     9181 atctggccgt cgcgtatgga gatgacgcgg tgggcgcgcg cggccacatc gtgctcgtgc
     9241 gtgacgacaa tgatggtgtt gccctcggcg tgcaggcgct cgaagagcgc cattatctcg
     9301 tggctcgtct tggtgtcgag cgcgccggtg ggctcgtcgg cgagcagtat cgaggggtgg
     9361 ttgacgaggg cgcgcgcgat ggcgaccctc tggcgctggc cgcccgaaag ctcgttcggg
     9421 cggtgcgtca tgcgatccga gagctcgacg gaggcgagcg cctgcttcgc cttctcgcgc
     9481 cgctcggccg ccgagatgcc cgcgtagatg agcggcagct cgacgttgtg aagggccgtc
     9541 gcgcgcgcga gcaggttgaa ggtctggaag acgaagccta tctcctgatt gcgtatgcgc
     9601 gcgagctcgt cgtcctccat gtcggagacg agcttgccgt taatccagta gcggccgcgc
     9661 gtcggcgtgt cgaggcagcc gatcaggttc atcaaagttg acttgcccga gcccgacggg
     9721 ccgatgatgg cgaggtactc gccgcgctgc acgtcgaagg agacgccgcg cagggcgtgc
     9781 agctcctcgg agcccatctg gtaggtgcgc cagatgtcgc gcatcgagat gagagaggcc
     9841 ggcacggcgt cgtgcgcgag taggtcgccg ggggcgagcg ccgagggctc gggcgttgta
     9901 agcgtagcgt cgctcatttc ttgtcggcct ctccctggtc gccggggccg cccggcttct
     9961 tctcctgccg cttgacggcg tcgccctcct tgagcgtccg cagcacgcgg ctcgggcctg
    10021 tgatgacctc caggccggcc gaaaggccgc tcactatctc gatgtcggac tcgccggtga
    10081 tgccggtctc gacggggacg aacttcacct tgttgccgtc catgacatag acgcccttga
    10141 tgtccttcgg cttctcgccc ggcggttgcg cgggcgcggc cggctgctgg gcgccgccgc
    10201 cggccggcgt gggctgaggc gtcggctgct tctcgacgat ggcctggagg gggacggcga
    10261 cgacgttctg cttcgtcttc gtcgtgatgg tcgccgtcga ggtcatgccg ggccgtagcg
    10321 ccttgcgcac gtcgtcgggc atgttcttca gttcgatgac gaccttgaac tccttggcct
    10381 cctggacgtt gacgcggttg gttatgccgc caccctgcat gtccgagcgc gagaccgcca
    10441 gcgggttctt ctgcgtgacg gtgccttcga tgtcgcgctc tcccatcgcg tccaccttga
    10501 ccttcgccga ctgcccgacc tcgacctgcg agatctcggt ctcgtcaacg ttgacctcga
    10561 cgttgatggt cgtcatgtcc gctatggtca tgagcgacgt ggtcgaggtg ctcgcgagcg
    10621 tgaactggcc gacgcgcgcg ggtatgtcaa cgacgacgcc ggtgagcggc gagagcgtga
    10681 ccgacttgcg gctgagcgac gactcgccgc gcaggatggc ctgttgctgg ttagcccgcg
    10741 cctcgctcga cgagacgctc tggcgggcgc gctgcacgcc tatctgcgcg tcgcggacgc
    10801 caacgcgggc ggcgttcacc cgggccttcg actcctcgac cgctatcttc gccgactcca
    10861 actgcgcctg cgcggtcttt aaagcgacct gcgcctgctt gtagttgtcc tgcgcgaggt
    10921 cgtactgcga gcgcgaggcg acgcctgact ctataagctc ggtcgtgcgc ttaagttccc
    10981 tctgcgccgc ggcgaggttg acctgctcgc ggtcaacgct cgtctgcgcg gtgttaacgg
    11041 cctggcgcga ctgcgcgagc gcgacctcgg cggaggcgag cgtctgctgc tgttgcgcga
    11101 cgttgttctc ggccgagagc acggccgtgc gcgcgttctg cacgtcggag atggcggcct
    11161 gcgcgctggc ggctgctgct gccgcggagg attcgagctg cgtggggtca acgcgcacga
    11221 gaggctggcc cgtggtgacg gggtcgccgg ggttgacgct tatctcgacg atgcggccct
    11281 gcacctcgct cgttaggttg acgaagcgta tggggcgaac ctcgcccgag gccgtgacgg
    11341 ttgatttgag ctcgggcctg acctcgacct tgacgacggt gacttcgggc tggtcggtgc
    11401 cgcgcgcgaa aatgcttatg acgactatca tcgcgaggac tgcgacggcc gcgaccgcga
    11461 ttatgacttt cttcttccgg cttacagcca tggggtttct acttccttct ctctcaaggg
    11521 gtgtgggacg ggtcgggtcg gaacctgcaa gattctcacg ggaccggcgc cgaatcaaag
    11581 gcggctgcct ctgggtctgc ccgtgtcgcc ggcaaatctt ctacgtccga aaaggtggaa
    11641 cagtttcaaa aacggtgggg gtttgtcggc cgacagttac ccttctctcc ggccatttac
    11701 cgccatcttt gatgcgttgt ggcggtttcg ggtttcgcgg tacaatgtgc gcccggcagc
    11761 ttcgcgcgcg cgcctctgcg gcccgcgggc gccggggcct aaagggggca tctccggggc
    11821 gtttcagccc gcaccgccag gtcaaaaacg aagggcccga agacgaaatg atcgcctgcg
    11881 aaaggtgcca tacggagaat cttgacgggg cgcagtactg cgacgagtgc ggggccgtgc
    11941 tctcggtcgc ctccgcgcct ccgctaccgt cgcccgcgca ggacggcggc ggcgcggccg
    12001 cttcggcttc cggcgtcgcc gggccgcagc cggcgccccc cgccccggcc ttctcgccgg
    12061 cgcgcacgtc cctctcttcg cggcagcagc agtcgctgcc gcgcgcggcc gaaggcaagt
    12121 cgggcgcgct ggggggcgag ggcgggccgc acgcgaagct cgtcatacac cgcggccgct
    12181 ccgtcggcaa ggagttcatg ctgagcgacg acgagtcgca cataggccga tgggacgccg
    12241 acggcggcat attcccggac gttgacctag acgccgacga cccggaggcg aaggtctcgc
    12301 gccgccacgc gcgcataacg cgccgcgcgg ggcagtactt tatcgaggat ttgggctcga
    12361 cgaacggcac cttcgtcaac cgcggccggc gcctgctgcc cggcgaccgg cagcagctac
    12421 gcgacggcga cgaggtcatc gtcggcaaga ctttcctgcg tttccacgtg cttggcgggt
    12481 gaggaatgcg gagtgcagaa tgatgaacag aagccgcccg tctttattca tcattctgca
    12541 ctccgcactc tgcactcagt aatcgaatga tgttgtcctg tcaacactgc ggcgcggcgg
    12601 tcgcttcgga agaccgattc tgcggcaact gcgggctggc tctcgcgagc accggccagc
    12661 agtcgccgcc cgcggccgcg cgcgcgtccg gccacggcgg gccggacgat ccgtcgcgcc
    12721 acttcaggga gtccgtgcgc gccgccacgg gcgagcccct gagcgtttcg ggcgagatag
    12781 gacagcggcc gtcggccgaa cagctccagc cgaccctcat cgagacgccc agccccttcg
    12841 ccgaagggtt cgacgctgac caagaggacg acctcgacac cgccgccccc gacgagccgg
    12901 agggagaggc cgcggccgcc gaagcgaccg gcgatgcgct ccccgacgca ccgacgcccg
    12961 cgcacgaaac gcccgcggcg gccgagcccg ccccgcccgc gtgggagccg gcccctttct
    13021 ccgcgggcga gcagaccggc gccggcgcga gcccggcgct cgaccccgaa gattcgccgg
    13081 ggacggcggc gcgcccttcg cgccagacgg gcgacgtccc gccgcgaccg agcggctcgc
    13141 gcacgggagg gtcgcgccgc gcctccagtc agttggagcc ggggacactc ctctacggcc
    13201 gctacgagat agtcaagcgc atcggcggcg gcggcatggg cgccgtctat tacgcgaagg
    13261 acaagaacct cggcgacgcc ccgcgcgccg tcaaggagat gatccagtcg cacctcgacg
    13321 agtctcagca ggagaaggcg attgccgact tcaagcgcga gtccatgctg ctcgcgtctt
    13381 tagagcaccc gagcatcccg accatctacg actacttcta cgacgatacg gcctcgcgct
    13441 tctacctcgt gatgaaatac atctcgggcg gcgactgcct ggcgcgcctt cgcaacgcgc
    13501 cgggcgggcg catagacgag ctgaccgtca ccgactgggg cacgcagacc gccgacgtcc
    13561 tccactacct gcacagccag cgcccgccca tcatctaccg cgacctcaag cccgccaacc
    13621 tgatgattga cggcaacacc gggcgcgtca tgctcataga cttcggcatc gcgcgctggg
    13681 tgcagaagga ggagaagggc gtcacggccg tcggcacgat ggggtacgcc ccgcccgagc
    13741 ttttcagcgg gaaggtcgag ccgcgctcgg acatctactc cctgggcgcg acgatgttcc
    13801 acctgctcac gggctccgac ccgcaggaca acccgctgct catcttcgac ttcacgaaga
    13861 acccggcgcc gcgccagata aaccccggca tctcgaacga gatggagcgg atactgatgc
    13921 gcaccgtcga gtacgagccg gagcggcgct tcgtctcggc cgccgagctg cgcgcggcgc
    13981 tcgcgaccca caccgagcgg ctcagggccg gctcggtcac ctacggcgtc gtggcggggg
    14041 tgagcccgca ggggggcgcc gcgcagacgc tcgccgtcga gatggtctat tgcggcttct
    14101 gcggcaagac catctcgtcc gaggacgttt tctgcgcgca ctgcggcgcg cgccagccga
    14161 ttgcggccgc gagcgcttct ttgcgcgccg cccgctcgac ggcccggctg gtcgtgacgg
    14221 gcacgacgga gctggacgcg accttcccct taagcaagga gagcaacctc gtcgggcgca
    14281 cagacccgca gtcgaacatc ttccccgaca tagacctttc gcgtttcgac ccggagacga
    14341 aaatctcccg tcgccacgcg cgcatctggc gcgagggcga gacgttcctg ctcgaagacc
    14401 tcggctcggt caacggcacc gtcgtcaacg acgccgtgcg gctggggccg cgtcagccgc
    14461 gccccctcgc cagcggcgac cgcctgcgcc tcggcgagac cacgctgcac ttcctgatag
    14521 gataaccgtc ggcgatcagc cttcagcttt ttgccttacg aaccctggct ttaagctgac
    14581 cgccgagtga ttatgtccgt tcgactcgaa cagaaagcga cggcctcggc ggcgccggcc
    14641 cctgcggtgg cggcgcggcc cccgggcccg cgcccggaag ttaacttcga gcggctgcgc
    14701 gcgcccttct cgctgcggtg cggcgcggtg cttattgact acatactgct cgtcggcctg
    14761 ctcgcattcg cgacgctgct ggcccgcctg ttcgacgaca cggggcgcgg cgcgggcccg
    14821 ttcctgaccg tgggctacgc ggctgtcgtc atggtcgccg cgatcaacct ggtgctgctg
    14881 ccgggcctga gcgggcgcac cctcggcaag tgggtcgccg gcctgagagt cgagcggctc
    14941 gacggcgtgc cgcttagctt cggccgcgcg ctgctccggc atctggccgg ctacccgctc
    15001 acgctcctga cgctggggct cggcttcctg ctcgccgcct tcaactcgcg cggccgcgcg
    15061 ctgcacgacc tcctggccgg caccgtcgtc gtccgcgcgc ggcggtcgcg gtagccgccc
    15121 cgcccgaggc cctttaagaa gatgcggtcg ctttgcccaa gctgcggcgc ggagactttc
    15181 gcgggcgcgc gcttctgccg ccggtgcggg gctgccgtgc gcgcggccga ggttgacgcg
    15241 gaggtctcgc cgacggcggg cacagtcccg ctcaccggcg agccttcgcg cacgaccgac
    15301 tcgctcggcg gcgacgagaa gaacctttcg cccgcgacct cgcgcgtgag ccgcgcagag
    15361 ctcgagcgca tacttaagac cgaggccccg cctccgcagc agcactcggc cgtcacgcgc
    15421 cccggcgcgg ccgcccggct cgcggacggc gacgacgcgg aagccactct cgtctcgccc
    15481 ccgattgacg aggcgacgcg ccccgccttc ggcgttgact tcgacgaaga gctgaccatc
    15541 acagtcccgc gcccggcgcc cgcggccgag agcgcggccg aaggcggcga cgagcatgac
    15601 ggccgtgctg tcgagacggt ctcgccgcgg cagcagtctc cgcagcagcc gcgccgtcga
    15661 gcctggccct tcgtcctcgc cgcgagcttc gccgtgctgc tcttcgcgac ggccgccggg
    15721 tggttcgcat ataggtactt gcgcgggcct tcgcgcccgg ccgcgggcgc ggcggggcct
    15781 gttgcgcccc ccgcgcccga cgcccggcag ttgttcgagg agaagctcgc ggaggccgaa
    15841 gggctgctcg cacagggcga catcacggcg gcgatggcgc ggctgcgcga ggcgaactcg
    15901 ctcgacccgg cgaacacgag ggcgcggctg cggctcggcg agcttctgtg ggacacgggc
    15961 gcgcgccgtg aggcgataga ggagctgcgc gccgcctcgc gcagctcacc cgaagacttc
    16021 accgtgtggc gcaggctcgc caccgcgcag ttcgccgaag ggctctacgc cgacgcggcc
    16081 gagtcttacc gccgcctcat cgcgctcgcc ggcgcggggg cggcagaccc gaacgacctg
    16141 ctctcctacg ccgacgcgct gcgcaactcc ggccgcgcgg aggaggcggc ggccgtttat
    16201 aagcgcctcg cgtccggccc cgcgcacgac ttcgcggagc ttgcgcgcgt gcgcctcggg
    16261 gagttggcgc agccgacgcc gcagcccacg cccacgccgc gccgcgagga gccgggcgtg
    16321 caggagggcg gcgaggtcgc ctcgtcaacc acgaccgagc cggccgcgcc cgcgcagcag
    16381 cagcaggcga cgcccacgcc gcagccgacg ccggcgccgc agaggccgcc ggcgcagcag
    16441 cagctcacgc cggccgagca ctaccgtcgc ggagtggagc tgtggtcgtc gaaccgcgcg
    16501 gccgccttcg ccgagttcca ggcggctgcg ggcggcggcg tcgttgacgc caactactac
    16561 ctcggcctct cctacgtgga gggcaaaaac ccgcgcgccc tgaaccgcgc ggccctcctg
    16621 gccgcgctgc gccacttcca gatagcgcag cgcgggcagt tcgccgagca gtcgcgccgc
    16681 tacgcgcgcc agctcgaaca ggagttcgac aggacaagat agtagtgcgg aagtcagagc
    16741 gcggagtgat gaattaaaac ttcttcatcc cgcaccccgc acttatcatt cgattatgcc
    16801 tgagctagtc gtcaactacc ccgaccgcgg ccccgacaat ttcacgctgg gccggctgag
    16861 gatcaccatc gggcgctcgg cgcgcaacga cctgtgcgtg cccgacccgt tcgcctcgcg
    16921 cgtccacgcc gaagtgaggc gcgagggcga ccagtacctc ctgcaagacc tcggctccgc
    16981 caatggcacc tactacaacg gctcgcggct ggaaggcacc gtgccgctca cgcacggcgg
    17041 ccgcatacag attggcgaga ccgaaattgt cttcaacgac cgctcggccg acgcgctgaa
    17101 cgccgccacc accttcgagg aggagggcga cgccgacgcg ccgctgcccg aggcgaccat
    17161 cgcgtttgac tcggcgcacc acacgacctc gggcctcctg gaagccatag agggcgcgcg
    17221 cacgcagacc tccgggcgct acgccgcgca ggccgtcgtc ccgcagcgcg ccacggacca
    17281 cggcgacctg ctagccctca tctcgaaggt cggcgttacg ctcctcgcgt cggccacgct
    17341 cgacgagacg ctgcgcgaag tcgcgcgcct cgtcttcgac gccgtcccgg ccgagcgctg
    17401 cctgataatg ctgcgcgacg agcaggccgg ggatctgcgc gtgcgcgccg cagagatgcg
    17461 cgaccgcggc acggacgtgg gcgaggtgcg cgtcagccgc accatcgtcg aggaggtggt
    17521 caaccagggt cgctcggtgc tcacctccga cgcgcagcac gacccgaggt ttaagtcgag
    17581 cacggtcacg ttccagggca tacgctccgt gctggcagtc ccgctgggcg tcggcgaccg
    17641 cgtcttcggc atgatctacg cagactcgcc gctcaccgag tcgcgcttca cggaggatca
    17701 cctgaaggtg ctgacgacgc tcggctccgt cgccgccata cgcgtcgaga acacgcgcct
    17761 tctggaagag cacctcgagc aggagcgctt cgagcgagag atgcagctcg cgcgcgagat
    17821 tcagcagcgc ttccagccga ccgccccgcc cgcggtggcg ggctacgagc ttcagggcat
    17881 aagcttccct tcctaccaga taggcggcga ctactacgac ttcatactct gcaccgacag
    17941 gcggctcgtc gtcgcgctcg gcgacgtttc tggcaagggg acttccgcgg cgctcctgat
    18001 gtcttcgctg cacgcggccg tccacgcgca ggtcgcctcg tgccgcccgc tcacggagac
    18061 catcagcgcc gtcaaccgtt atctggccga caacacgccg cccaaccgct tcgtcacgct
    18121 cttctacgcc gagctggacg ccgtgacggg ctctctctcc ttcatcaacg ccggccacaa
    18181 cccgccgctc atcgcgcact cgggcggcac gaccgagcag ctcggggcgg gcgggctccc
    18241 actgggcatc ctccccgact tcgactaccg cgaggggcgc acgcagctcc agcccggcga
    18301 cgtgctcgtg gcctactccg acggcgtcac ggagcagcag aacccctcgg gcgaggagtt
    18361 cggcacggcg cgcctccagg aagtgattga gaggaacatt gaccgctcgg ccgcggccat
    18421 acgagacaag atagaggcgg cgctctcggc cttcgcgcag gggacgccgg ccggcgacga
    18481 catcacgctc ctcatcgtga agagggcgaa ggcctgaggc gcgtttagcg tagcagtcgg
    18541 ctgacgctgg cgcggacgcg ctcggccgtc ttctcgccga cgttgtcgag caggtcgagc
    18601 ccgccgccct cgacgaactg gcgaaggtct tcgagcgaag agaccttgaa ctgctggtag
    18661 agggccgacg cggtctttat gccgacgcct tcgactttta gaaggtcgag caccgactcg
    18721 ggcgtctcgg ccttgagctt ctcccacgcc tcgaacgtcc cgcgctcaag cagctccaca
    18781 atctttccgc tgatggcctt cccgacgccg ggcagcgcct gcaagccgcg ggctccctcc
    18841 tcctccgcta tcacgcgcag cggcgtcggc caggtctcta tgacctcgga ggcgttgcgg
    18901 taggagcgca cgcggaagcg gtcgtcgccg cgaatctcca tgagagtcgc cagccgctcg
    18961 a
//
LOCUS       DASPKR010000146        10292 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1053401, whole genome shotgun sequence.
ACCESSION   DASPKR010000146 DASPKR010000000
VERSION     DASPKR010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10292)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10292
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1053401"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VD968_04220"
     CDS             complement(<1..497)
                     /locus_tag="VD968_04220"
                     /inference="COORDINATES: protein motif:HMM:NF015666.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HYE13631.1"
                     /translation="MHIAVIGTGYVGLVTGACFAEFGVNVTCVDLDADKIAKLKEGVI
                     PIYEPGLDQIVAKNTQAGRLHFTTDIRTAVEQALVIFLAVGTPPKEDGSADLRFIDEA
                     ARSIAEHMNGYKVVVTKSTVPVGTGERLRRQVRRRRVEEGPEGRVPDEVRLRHRLEPG
                     VPARGR"
     gene            complement(679..1392)
                     /locus_tag="VD968_04225"
     CDS             complement(679..1392)
                     /locus_tag="VD968_04225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13632.1"
                     /translation="MTSRTWSRTPITLALTLAILCTYSMVGLAQQGQTGPTGDLSVVG
                     EVTVNGTSAISGATVFSDSTVTTGQNSSAVVSLGKLGRVELLPNSSLKLSFTDTGMTG
                     MLDQGRVRISSSSGVSAVVTTKDGSAVADLNQPNVFMVDVECGDTLVATQSGKVELRA
                     GNTVKQIAAGNQDTAGTASGPGTRCTRYQMPEMEGLSGAGLAALLLGVGGAIAAAIFA
                     AQGDDITFGDGPIVISPSR"
     gene            complement(1700..2746)
                     /locus_tag="VD968_04230"
     CDS             complement(1700..2746)
                     /locus_tag="VD968_04230"
                     /inference="COORDINATES: protein motif:HMM:NF013292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoaspartyl peptidase/L-asparaginase"
                     /protein_id="HYE13633.1"
                     /translation="MASCLPLGVRASTQAAGGGQTATTALKPFGFVIHGGAGTIERSR
                     MTPEREAAYRSKLTEALLAGFQVLDKGGSGLDAVVAAIVLLEDSPLFNAGKGAVFTSA
                     GTNELDASIMDGSTLKAGAVAGLKRVKNPIKLARLVMEQSPHVMMTGEGAEEFGRQKG
                     AELVDPKYFFTEERWQQLQRRKQEEKAEPPKKSGLDGRAVEPESLLLLEDKKFGTVGA
                     VCLDRAGNLSAGTSTGGMTNKRFGRVGDSPIIGAGTYSSNQSCAVSCTGDGEFFIRTV
                     VAHDLAAMMQYGGKSLKESGDAVIEKVGKLGGTGGLIAIDRQGNFAMPFNTSGMYRGY
                     VGPDGRPHVQIYRD"
     gene            complement(2938..3285)
                     /locus_tag="VD968_04235"
     CDS             complement(2938..3285)
                     /locus_tag="VD968_04235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13634.1"
                     /translation="MRQPTFFEKEPRPGGADAERLVLYALGDFQARGKVLAGRELPLD
                     RLRGALRRAAEAFGVEDLNDEQSASALSSLGASVLRVPTFFAKHPFRVTVPEPLARRA
                     LEFHREMRKTEET"
     gene            complement(3303..3887)
                     /locus_tag="VD968_04240"
     CDS             complement(3303..3887)
                     /locus_tag="VD968_04240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13635.1"
                     /translation="MRAEKVLPGLAAAALLLCAACATAAAQGSRRAAAAGDEEFGPIV
                     RSYLSYLRDQQEVVDDRVSRREVDRKYYLHNSNRIRALREMAVRIARESENDFLPELE
                     AVSSDEFDLLFEEPLPKPATLSEGQTLDFKFRYLGAVTVRREKFYLFARLDPYEQAEL
                     RKKGEAAKPQGAPAAAAQPPEPDPASRPRRVGQP"
     gene            4073..5332
                     /gene="coaBC"
                     /locus_tag="VD968_04245"
     CDS             4073..5332
                     /gene="coaBC"
                     /locus_tag="VD968_04245"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HYE13636.1"
                     /translation="MSSDVAGESGHAGGGEFAGRRVALGISGGIAAYKAVEVLRGLQR
                     AGCAVRVGMTRRACEFVTPLTFRAISGSHVVVDDYAADNPDPIAHITFSQSVELLVVA
                     PATANIIAKFANGVADDFLTSTYLASNAPVLVAPAMNTTMLLHPATQRNLARLRQDGV
                     RVVEPDAGEMACGTIGPGRLSDPQLIVGAALEVLRESARRRYDMAGERVLITAGATRE
                     EIDPVRFISNHSSGRMGFALAEAARSRGAEVTVVAGVTSVAPPAGVRVLRAVSAEEMR
                     AAVMGEVEGATVFVAAAAVADYRPAKRADSKMKKSEEALTLTLEPTPDILAEVARARR
                     DGLLVVGFAAETERVAEHARSKLERKGLDAVVANDLTQDGAGFDKETNVVTILTRGAA
                     APVSLPLMSKLEAAHRVLDEVVRLRGR"
     gene            complement(5432..9346)
                     /locus_tag="VD968_04250"
     CDS             complement(5432..9346)
                     /locus_tag="VD968_04250"
                     /inference="COORDINATES: protein motif:HMM:NF014869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M4 family metallopeptidase"
                     /protein_id="HYE13637.1"
                     /translation="MPRDTQLLKGAKPKLILALSLALALAAAVSAAVFVGSPAAQASG
                     ADTVKASAASAAALSKLQATGGQVGKSNVSRATGVFDFVMATLGGVLVGDGGNGAPEE
                     RAVSFLREHGGLVGMSMAERGALGVAAPASPLRAAGMTTDSVGSTHVRLNQYYRGLPV
                     FGAQVVVHMNASGITGVNGNYVPGINAGTTPTVTAAQAAATALKQQVGPSPLSVNKTE
                     LAIYRKGLLEGYQGDSVLAYNVELSNTQGLREQVWIDAGTGSVLNRIQLQHQGLDRNI
                     YTPEYEESFRVRKEGDPNTPGQTPGTSGADPINNLYLFAGQTYNMFASAFGRDSYDGA
                     GHSLHSVYLVNDICPNAYWNGVTTNYCPDFDADDVVAHEWGHAYTQFTHGLIYSYQSG
                     ALNESYSDVFGETMDLLNGVDAEGGSNNSQPRPNGQRWQIGEDVPTINAQQLGFLRDM
                     WSPTTYGDPDKVSSGSYACGSDDGGGVHTNSGVPNHAFAMLVDGKTFNGQTVQGIGFT
                     RALHIYFRAMTVYQTPTTDFAQHADALEASCQDLIGQSLNGIKFNSASGSASGDVITA
                     QTCEQVSKAMLAVEMRQSSPCPVSILLNPDEPAACDGATDIFVEDWETGDDGWTRTST
                     GVTADWEADDTVAPGNDKQRLRNFNLTSDLPEGGGSGSAIHAPNPAIGDDGGGTCTPG
                     GDYSGQFNITSASIEIPTGAEDLKMRFDHYVATEAGYDGVQVELSVNDGAFELVPNGN
                     YIFNAPNRALTSTLDGNTNPNAGEDAWSGTNVGTPANQPPGSWGTTIIDLSSLASPGD
                     SIKVRFTSSQDGCNGVDGWYVDNIRVYYCPTLEAPTLSIGADYQDPDPDGKYTLTWTR
                     PAGASGPDVLQESSVCGPLLSDDASSLANWTAANGPAADPVKPMWQAAPAGQKPNHNS
                     ASFWANPVSEQETQTTFATLTYNNAITIPSSGITTLSFDEWYFNEDDDRGFVEVSEDN
                     GATWTPVYTNNRPMGDLPDAGADAFASEGLTRKNIDMTVYSGKTLRLRFRYALGQSNF
                     FVFFQYGWYVDNIAITNDSFTNVATTDGTSFTVLGRPNGSRCYRVRTTYNFDGLLAAS
                     PYSNQVGANVERVGPPAVNLANLLLTPNGSPARGDAFINACRNSYVGKVTLAAPAPAG
                     GQEVALSNSNPKATVPNSVVVPEGQTTATFNYTVEPVDSTTVGVVSAASGDVTVVRTL
                     TIRPMWVLAVLPSVLSITGGQTMTAQIRMECVVAPSDITVKLRSSDTSVATVPSEVVV
                     PKGQRNKSFTIQTNPVSSAKQVRFKASANGSDKNSPIVTVNP"
     gene            9573..>10292
                     /locus_tag="VD968_04255"
     CDS             9573..>10292
                     /locus_tag="VD968_04255"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012321002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HYE13638.1"
                     /translation="MDERSELREMLRALAEDVAESAAYLRELGADGLEGLSPDVLAGA
                     ERPDAGAQPPAREYRPAPPKPPTKTIPPALARNASADKPKSPPRALTAPPLRADGPTS
                     ALYQTAMPTKKPVRKPSPDPPEPRETLFGDITPKDELSLGTPGETFDDIRADVGECVR
                     CPLHQGRTKIVHTEGNQRARLMFVGEAPGADEDASGRPFVGRAGQLLNKIIEAIGLKR
                     EDVLIGNINRCRPPGNRTPTTD"
BASE COUNT         1577 a         3315 c         3575 g         1825 t
ORIGIN      
        1 cgccctcgcg caggaactcc gggttcgaga cgatgccgaa gtcgaacttc gtctggtact
       61 cggccttcag gtccttcttc cacacgacgt cgccggactt gacgtcgcag ccgctcgccc
      121 gtgcccacgg ggacggtgga cttcgtgacg acgaccttgt agccgttcat gtgctcggcg
      181 atggagcgcg cggcctcgtc tatgaagcgg aggtcggccg agccgtcctc tttgggcggc
      241 gtgccgacgg cgaggaagat gacgagcgcc tgctcgacgg cggtgcggat gtccgtggtg
      301 aagtggaggc ggccggcctg cgtgttcttg gccacgatct ggtcgaggcc cggctcgtag
      361 atggggatga cgccttcctt gagcttggcg atcttgtcgg cgtcaaggtc cacgcaggtg
      421 acgttgacgc cgaactctgc gaaacaggcg cccgtcacga gcccgacgta gcccgtcccg
      481 atgactgcga tgtgcattac cttttgaaga acctttcagg agctgagatg ggccgcggcc
      541 ccgtgcgggc gattatctca gacaaaagct tgcgggtcac gcgcagcttg cgccgcgtga
      601 cccgcaaagg tgtggggact tcggagtgtc taaagcggaa ccgtcaccgg gctcaaccgg
      661 ggtcgcgccg gggcgacctt agcgggacgg gctgatgacg atggggccgt cgccgaacgt
      721 gatgtcgtcg ccctgcgccg cgaagatggc cgcggcgatt gcgccgccga cgccgagcag
      781 gagggccgcc aggccggcgc cgctcaggcc ctccatctca ggcatctggt agcgcgtgca
      841 gcgcgtgccg gggccgctgg ccgtgccggc cgtgtcttgg ttaccggcgg cgatctgctt
      901 gacagtgttg ccggcgcgca gctcgacctt gcccgactgc gtcgcgacca gcgtgtcgcc
      961 gcactcaacg tcaaccataa agacgttagg ctggttgagg tcggccacgg ccgagccgtc
     1021 cttcgtcgtc accacggcgc ttacgcccga ggacgaggag atgcggacgc ggccctggtc
     1081 gagcatgccg gtcatgcccg tgtcggtgaa gctcagcttg aggctagagt tcggcagcag
     1141 ctcgacgcgc ccgagtttgc cgaggcttac gacggcgctg gaattctgtc ccgtcgtgac
     1201 ggtgctgtcc gagaagacgg tcgcgcccga gatggcgctc gtgccgttga cggtgacctc
     1261 accgaccacg gacaggtcgc ccgtagggcc tgtctgcccc tgctgggcga ggccgaccat
     1321 cgagtaggtg cacaagatgg cgagcgtcaa agccagcgtg atgggcgtac ggctccaagt
     1381 tctgctagtc attacttctc ctcccgtagg tgaaactgtc gaaatttttc agagagagcg
     1441 cgtcgcgagc cccttcttag ccggggctcg catgagacga tgttgtgtgt ttttcttatc
     1501 tcgccaaccc gtcccagtca acagcccgcg ctgaacatct cataaaagca ggcatgagag
     1561 ccattgaggg ctacaaaatg accccgcttt atttacacga aacaggcccc tgtgtcaata
     1621 aacatttccg tgaattcaac gatttttcaa caatttgggg gcgcgcggcg cgtctcccga
     1681 gggcaggaga gaggggcgtt caatccctat aaatctgtac gtggggtcgc ccgtccggcc
     1741 cgacatagcc ccggtacatc ccagacgtgt tgaacggcat agcgaaattg ccctgccggt
     1801 ctatggcgat gaggccgcct gtcccgccga gtttcccgac cttctcgatg acggcgtcgc
     1861 ccgactcttt caagcttttc ccaccgtatt gcatcatggc ggcgaggtcg tgggcgacca
     1921 cggtgcgtat gaagaactcg ccgtcgccgg tgcaggagac ggcgcaggac tggttgcttg
     1981 agtaagtccc tgcgccgatg atgggcgaat cgcccaccct tccgaagcgc ttgttcgtca
     2041 tcccgcccgt cgaagtcccg gccgaaaggt tcccggcgcg gtcgaggcag acggcgccga
     2101 cggtgccgaa cttcttatct tcaagaagga gcagactttc cggctcaaca gcacgcccgt
     2161 cgaggccaga cttcttcggc ggctcggcct tctcctcctg cttgcggcgc tgtagctgct
     2221 gccaacgctc ttccgtgaaa aaatatttcg ggtcaaccag ttctgcgccc ttctggcggc
     2281 cgaactcctc ggccccttcg ccggtcatca tgacgtgcgg cgactgctcc atgacgagcc
     2341 gcgccagttt tattgggttt ttgacgcgct ttaggccggc gaccgcgccg gccttgagcg
     2401 tcgagccgtc cataatcgag gcgtccagct cgttcgtgcc ggcgctcgta aagacggcgc
     2461 ccttcccggc gttaaaaagc ggcgagtctt ccaaaagcac aattgcggcc actacggcgt
     2521 cgagcccgct cccgcccttg tcgagaacct gaaagcccgc gagcagcgct tccgtcagct
     2581 tcgagcggta ggccgcctcg cgctcgggcg tcatgcggct gcgctcaatt gtccccgcgc
     2641 cgccgtgtat gacgaagccg aagggcttga gcgccgtcgt cgctgtttgc ccgccgccgg
     2701 ccgcctgcgt cgaggcgcgc acgcccaagg gcaggcaaga agccacggcg gcggcgcccg
     2761 ctccacccag gaatcttcga cggcctttgt cagcggctcg gcccaaaaca gtctccgccc
     2821 ttcgaggggc caaaaaaaac tgaacgcact tttgtctttg gaactagcgg gcatgttagc
     2881 agaggctccg ggcgggcgca atctgattct accggcgcgg cgtaagcagt ttcagcccta
     2941 agtctcttcg gtctttctca tctcgcggtg gaattcgagg gcgcggcggg cgagcggctc
     3001 ggggactgtc acgcgaaagg ggtgcttggc gaaaaaggtc gggacgcgga ggacgctcgc
     3061 gccgagcgag gagagcgcgg aggccgactg ctcgtcgttt aagtcttcga cgccgaaggc
     3121 ttcggccgcg cgccggagcg ccccgcgtag gcggtcgagc ggtagctcgc gcccggccag
     3181 gactttcccg cgcgcctgaa aatcgccgag cgcgtagagc acaagccttt cggcgtcggc
     3241 cccgccgggc cgcggctctt tctcgaagaa tgtgggctgg cgcatgtcga aaggcgcgga
     3301 cttcagggct ggccgacgcg gcggggccgc gaggcggggt cgggctcggg cggctgcgcg
     3361 gccgcggcag gcgcgccttg cggcttcgcg gcctcgccct tcttcctcag ctcggcctgc
     3421 tcgtatgggt cgaggcgcgc gaagaggtag aacttctcgc gccggacggt cacggcgccc
     3481 aggtatctga acttgaagtc gagagtctgc ccctcactca gggtcgccgg cttggggagc
     3541 ggctcctcga agagcaggtc gaactcgtcc gaagagacgg cctccagttc gggcaggaag
     3601 tcattctcgc tctcgcgggc gatgcgcacg gccatctcgc gcagcgcgcg tatgcggttc
     3661 gagttgtgca ggtagtactt gcggtcaacc tcgcggcggc tcacgcggtc gtcaacgacc
     3721 tcctgctggt cgcggaggta gctgagatag ctccgcacga tggggccgaa ctcttcgtcg
     3781 cccgccgcgg cggcgcgccg cgagccctgc gcggccgcgg tcgcgcacgc ggcgcaaagg
     3841 aggagcgcag cggcggcgag ccccggcaaa actttttctg ccctcaacac tctgcttgca
     3901 cctcgaacac tcgcgcgcgt gcttcagtcg tcggtcgtgt cttcaaactc gtcgggggtt
     3961 tcggggcgtg atgcgtgaga gtttagcaca aagcgcgccc ggcggcggaa gtgtgccgat
     4021 tgcgcgcccc gtgtgggggt gataaattca cggcggtcgc ttcatacagc ttatgtcgtc
     4081 agacgttgcc ggagagtcgg gtcacgcggg cggcggcgag ttcgccggcc gtcgcgtcgc
     4141 gctcggcatc tcgggaggga tcgccgctta caaggccgtc gaggtcttgc ggggcttgca
     4201 gcgcgcgggc tgcgcggtgc gcgtcgggat gacgaggcgc gcgtgcgagt tcgtgacccc
     4261 gctcaccttc cgggccatct cgggctcgca cgtcgttgtt gacgactacg ccgccgacaa
     4321 ccccgaccca atcgcgcaca taaccttctc gcagtccgtc gagcttctcg tcgtcgcgcc
     4381 cgcgaccgca aacatcatcg ccaagttcgc taacggcgtc gccgacgact tcctgacctc
     4441 gacttacctt gcgtcgaacg cgcccgtgct cgtcgcgcca gcgatgaaca cgacaatgct
     4501 tctgcacccg gcgacgcaga ggaacctagc gcggctgcgt caggacggcg tgcgcgtcgt
     4561 cgagcccgac gcgggcgaga tggcctgcgg caccatcggg ccgggccgcc tgagcgaccc
     4621 gcagttgata gtcggggccg cgctcgaggt gctgcgcgag tctgcgcggc gccgctacga
     4681 catggcgggc gagcgcgtgc taatcacggc gggcgcgacg cgcgaggaga ttgacccggt
     4741 gcgcttcatc tcgaaccact cctcggggcg catgggcttc gcgctcgctg aggcggcgcg
     4801 ctcgcgcggc gcggaggtga cggtcgtcgc tggcgtgacg agcgtcgcgc ctccggcggg
     4861 cgtccgggtc ttgcgcgccg tgtcggcgga ggagatgcgc gcggccgtga tgggcgaggt
     4921 cgagggcgcg accgtcttcg tcgcggcggc ggccgtggcc gactaccgcc cggcgaagcg
     4981 cgccgactcg aagatgaaga agtcggagga ggctttgacg ctcacactcg agcccacgcc
     5041 cgacatactc gccgaagtcg cccgcgcgcg ccgcgacggg ctgctagtcg tgggcttcgc
     5101 ggcagagact gagcgcgtcg cggagcacgc gcgctcgaag ctagagcgca aggggctgga
     5161 cgccgtagtg gcgaacgacc tgacgcaaga cggcgcgggg ttcgacaagg agacgaacgt
     5221 cgtgaccatc ctcacgcgcg gcgcggcggc gcccgtttcg ctcccgctta tgtcgaagct
     5281 cgaggcggcg caccgcgtcc tggacgaggt ggtgcgcctg cgcgggcgct aggcccggcg
     5341 cgggcagaaa agttcaaaga gaaaggcggc gcggggagtt tgactccccg cgccgccttt
     5401 ctcttctgcc gcctctaagg cgggtttgtg gttacgggtt gacggtcacg atgggcgagt
     5461 tcttgtcgga gccgttggcc gacgccttga acctcacctg cttggccgaa gagaccgggt
     5521 tggtctggat ggtgaacgac ttgttgcgct gccccttcgg cacgacgacc tcgctaggca
     5581 cggtggcgac cgacgtgtcg ctgctgcgta gcttaaccgt tatgtcgctg ggcgccacga
     5641 cgcactccat ccttatctgc gccgtcatcg tctggccgcc cgtgatgctc aacacgctgg
     5701 ggaggacggc caagacccac atcggcctga tggtcagcgt gcggacgacc gtcacgtcgc
     5761 ccgacgccgc cgagacaacg cccaccgtcg tcgagtcaac gggctcgacc gtgtagttga
     5821 aggtcgccgt cgtctggcct tccggcacga cgaccgagtt cggcaccgtc gccttcgggt
     5881 tggagttaga cagcgcgacc tcctggccgc cggcaggcgc cggggccgcg agcgtcacct
     5941 tgcccacgta gctgttcctg caggcgttga tgaacgcatc gccgcgcgcc ggactgccgt
     6001 tgggcgtgag cagcaggttc gcgaggttga cggccggcgg gccgacgcgc tcgacgttgg
     6061 ccccgacctg gttgctgtag gggctggccg ccagcaaccc gtcgaagttg taggtcgtgc
     6121 gcacgcggta gcagcgcgag ccgttgggcc gcccgaggac ggtgaacgac gtgccgtcgg
     6181 tcgtggcgac gttagtgaag ctgtcgttcg tgatcgcgat gttgtccacg taccagccgt
     6241 actggaagaa cacgaagaag ttcgactggc cgagcgcgta gcggaagcgc agccgtagtg
     6301 tcttcccgct gtagacggtc atgtctatgt tcttccgcgt aaggccctcg gaggcgaacg
     6361 cgtcggcgcc cgcgtcgggc aggtcgccca tcggccggtt gttcgtgtag acgggcgtcc
     6421 acgtcgcccc gttgtcctcg gagacttcga cgaagccccg gtcgtcgtcc tcgttgaagt
     6481 accactcgtc gaagctcagc gtggtgatgc ccgaagaggg tatcgttatc gcgttgttgt
     6541 aggtcagcgt ggcgaacgtc gtctgggtct cctgctccga gacggggttg gcccagaagg
     6601 acgcgctgtt gtggttcggc ttctgccccg cgggcgccgc ctgccacatc ggcttgaccg
     6661 ggtctgcggc aggcccgttg gccgccgtcc agttggcgag gctcgaggcg tcgtccgaga
     6721 gcagcggccc gcagacgctc gactcctgaa ggacgtcagg gcccgaggcg ccggccgggc
     6781 gcgtccacgt gagcgtgtac ttgccgtccg ggtcggggtc ctggtagtcg gcgcctatcg
     6841 agagcgtggg cgcctctagc gtcgggcagt agtagacgcg gatgttgtcc acgtaccagc
     6901 cgtccacgcc gttgcagccg tcctggctgg aggtgaagcg gactttgatg gagtcgccgg
     6961 ggctcgccag cgacgacagg tcaatgatgg tcgtgcccca agagcccggc ggctggttgg
     7021 ccggcgtgcc gacgttcgtc cccgaccatg catcctcgcc cgcgttcggg ttggtgttgc
     7081 cgtcaagggt gctcgtcagc gccctgttcg gggcgttgaa gatgtagttg ccgttcggca
     7141 ccagctcgaa ggcgccgtcg ttgacgctca gctcgacctg gacgccgtcg tagcccgcct
     7201 cggtcgccac gtagtggtcg aacctcatct tcaggtcttc ggcgccggtc gggatctcga
     7261 tcgaggcgct ggtgatgttg aactggcccg agtagtcgcc gccgggcgtg caggtgccgc
     7321 cgccgtcgtc gcctatcgcg gggttcgggg cgtggatggc gctgccggag ccgccgccct
     7381 cgggcaggtc ggaggtaagg ttgaagttcc taagcctctg cttgtcgttg ccgggggcga
     7441 ccgtgtcgtc ggcctcccag tcggcggtca cgccggtgct ggtgcgcgtc cagccgtcgt
     7501 cgcccgtctc ccaatcctcg acgaagatgt cggtcgcgcc gtcgcaggcg gccggctcgt
     7561 ccgggttgag caggatcgag acggggcagg gcgaggactg gcgcatctcg acggcaagca
     7621 tggccttgga gacctgctcg caggtctggg ccgtgatcac gtcgccggag gcgctgccgc
     7681 tggccgagtt gaacttgatg ccgttcaggg actggccgat gaggtcttgg cacgaagcct
     7741 cgagcgcgtc ggcgtgctgc gcgaagtcgg tcgtgggcgt ctggtagacc gtcatggcgc
     7801 ggaagtagat gtgcagcgcc ctcgtgaagc ctatgccctg gaccgtctgg ccattgaagg
     7861 tcttgccgtc aacgagcatt gcgaaggcgt ggttggggac gcccgagttg gtgtggacgc
     7921 cgccgccgtc gtccgagccg caggcgtagc tgcccgagga gaccttgtcg gggtcgccgt
     7981 aggtcgtcgg cgaccacatg tcgcggagga agccgagctg ctgggcgtta atggtgggca
     8041 cgtcctcgcc tatctgccag cgctgcccgt tggggcgcgg ctgcgagttg ttcgacccgc
     8101 cctcggcgtc aacgccgttg agcaggtcca tcgtctcgcc gaagacgtcg gagtaggact
     8161 cgttgagagc gcccgactgg tacgagtaga tgagcccgtg cgtgaactgc gtgtaggcgt
     8221 ggccccactc gtgcgcgacc acgtcgtcgg cgtcgaagtc ggggcagtag ttcgtcgtca
     8281 cgccgttcca gtaggcgttc gggcagatgt cgttgacaag gtagacgctg tgcagcgagt
     8341 ggccagcgcc gtcgtaggag tcgcggccga aggccgaggc gaacatgttg taggtctgcc
     8401 cggcgaacag gtaaaggttg ttgatggggt cggcgcccga cgtgcccggc gtctggcccg
     8461 gcgtgttggg gtcgccctcc ttgcggacgc ggaaggactc ttcgtactcc ggcgtgtaga
     8521 tgttgcggtc gagcccctgg tgctggagct gtatgcggtt aaggacgctg cccgtccccg
     8581 cgtctatcca gacctgctcg cgcaggccct gcgtgttcga gagctcgacg ttgtaggcca
     8641 acacgctatc gccctggtag ccctcgagca ggcccttgcg gtagatggcg agctccgtct
     8701 tgttgacgct cagtggcgag gggccgacct gctgcttgag tgccgtcgcg gcggcctgcg
     8761 ccgccgtcac ggtcggggtc gtgccggcat tgatgccggg gacgtagttg ccgttgacgc
     8821 ccgtgatgcc cgacgcgttc atgtggacga cgacctgcgc gccgaagacc ggcaggcccc
     8881 tgtagtactg gttcaagcgg acgtgagtcg agccgacaga gtcggtcgtc atccccgcgg
     8941 cgcgcagcgg cgaggccggg gccgcgacgc cgagcgctcc ccgctcggcc atgctcatgc
     9001 ccaccagacc gccgtgctcg cgaaggaacg agacggcgcg ctcctcgggg gcgccgttgc
     9061 cgccgtcgcc gacgagcaca ccgcccaacg tcgccatgac gaagtcgaag acgcccgtcg
     9121 cgcgcgagac gttcgacttg ccgacctgcc cgccggtggc ctgaagcttg gagagggccg
     9181 cggccgacgc ggccgaggct ttgacggtgt cggcgccgct cgcctgcgcg gcggggctcc
     9241 cgacgaaaac ggcggcagag acggcggccg ccagcgcgag ggcaagagag agggccaaaa
     9301 tcagtttggg cttagccccc ttgagtagct gtgtgtcacg tggcatggtg ctattctccg
     9361 tttatatttt tgcctgacgg gtcgcgcgcc tggggcggcc tgccgtgcga ggttgaaacc
     9421 aaaaccgact gcgatagtga cactttactc ggccgggttg aggaattctt gaggcagact
     9481 tgaggcgggc gaaagccccg gttgagccct gtttttcgcg ggtttttgct gaacttcgcg
     9541 ggcaaatcgt gcgataatcc acaggaagcg tgatggacga acgttcggag ttgagagaga
     9601 tgcttagggc gctcgccgag gacgtggccg agtcggccgc ctacctgcgc gagcttggcg
     9661 cggacgggct tgagggcctg agcccggacg ttctggccgg cgccgagcgg cccgacgcgg
     9721 gggcgcagcc ccccgcgcga gagtatcgcc ccgctccgcc gaagcccccg actaagacca
     9781 tcccgcccgc gctcgcacgc aacgcctcgg ccgataagcc gaagagcccg ccgagagcct
     9841 tgaccgcccc tccgctccgc gcggacgggc cgacttcagc cctttaccag acagcgatgc
     9901 ccaccaaaaa acctgtcaga aagccttcgc ccgaccctcc cgagccgcgc gagacgctct
     9961 tcggcgacat cacgccgaag gacgagctga gcctaggcac tcccggcgaa accttcgatg
    10021 acatacgcgc cgacgtcggc gagtgtgtcc gatgcccgct tcatcagggc cgcacgaaga
    10081 tcgtccacac ggaagggaac cagcgcgccc gcctcatgtt cgtcggcgag gcgccgggcg
    10141 ccgacgagga cgcctcgggc cgccccttcg tcggtcgagc gggccagctc ctcaacaaga
    10201 tcatcgaggc catcggcctc aagcgcgagg acgtgctcat cggcaacatc aaccgctgcc
    10261 gcccgcccgg caaccgcacg cccacgaccg ac
//
LOCUS       DASPKR010000147         8207 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_277420, whole genome shotgun sequence.
ACCESSION   DASPKR010000147 DASPKR010000000
VERSION     DASPKR010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8207)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8207)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8207
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277420"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..566
                     /locus_tag="VD968_04260"
     CDS             <1..566
                     /locus_tag="VD968_04260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13639.1"
                     /translation="TLLLLLASAPYVVADIARPAESKPDYNRVRADLPRRYMLIESRP
                     EAREARLRVPRSLLEELAPASSQATGGAAIFGATPARTVVAGVFLSLSLALAGMLLAR
                     SRRQAVGRVAVVAIGSLACAAAFAVGALANVGPPPRPNALDPQTLVKAVSAGATISGD
                     VRVEIVEDGDELKLVVPTRNRARGDDE"
     gene            553..1593
                     /locus_tag="VD968_04265"
     CDS             553..1593
                     /locus_tag="VD968_04265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13640.1"
                     /translation="MTTSSMQSVVELKGLRQSGEGARRAALPFAAACSLALLGAGALA
                     GWAPVGLSVVTVFLFAGPHNWFEFRYFVSRLPVSWGQSRNFFATAIAGVVLLTAGYAA
                     LPLLGSALVWSGSEWSTAAAVWNSLLIGWVALLVLLRGRLSPRRDWSWALPVGSSLVA
                     LNWLAPYALSLALVYLHPLVALWFLDRQLLRTRRSWSRAYRLCLLALPVVLCALWWKL
                     AAAPPLLADDELSLRIVRHAGADMLAGVSSHLLVSTHVFLETLHYGVWLVAMPLAGAA
                     AAPWRLRSIPLVRHPRGWPRLVVTALVLGAAAVVALWLCFAADYPTTRDIYFTVAVAH
                     VLAEVPFLLRML"
     gene            1602..2009
                     /locus_tag="VD968_04270"
     CDS             1602..2009
                     /locus_tag="VD968_04270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13641.1"
                     /translation="MRASDLWLFLPFGYALTVLLETPVLAVALSRRHTLRRRLLAGLW
                     LTACTYPVVVLVLPLILEGYSRAAYLTVAEIFAPAAECALFLAAFGLGGGGGRRDALR
                     DCAAITAANLLSFGAGEVLGAFGWLGLFSAAAK"
     gene            complement(2298..2780)
                     /locus_tag="VD968_04275"
     CDS             complement(2298..2780)
                     /locus_tag="VD968_04275"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE13642.1"
                     /translation="MGIKSNAAALPTTAILTLRPARLEDSERLLAWRNERAALAASRT
                     LLPIPFEEHARWFPASLCDPLKSIYIVEVEGEPAGYARAEWRGEAWELSWLLAPDHRG
                     RRLSYPMVWALVESTHGPVEAYIRTGNVASRKAAEAAGLRLSGRDGDFLIYSNRIARP
                     "
     gene            complement(2932..3004)
                     /locus_tag="VD968_04280"
     tRNA            complement(2932..3004)
                     /locus_tag="VD968_04280"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2969..2971),aa:Lys,seq:ctt)
     gene            complement(3066..4835)
                     /locus_tag="VD968_04285"
     CDS             complement(3066..4835)
                     /locus_tag="VD968_04285"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HYE13643.1"
                     /translation="MRKFNLTALALLLGVSFLVPPLPAWSQSAGGSGGAAAAVAPAAG
                     AAASPTFAAARSSAERITADKLKEILYFIASDEMAGRDTPSEGLDATAKYIADRLKKL
                     KLKPAGDKGSYFQRIKLRRTQVDLENTSAQLGDRKFRVGEGFLPTGRVSGEAEGQLVY
                     AGHGWVIRSKGVNAYEGIDVKDKIVVVAGNGTAPPPGVTNADIKALPGGDWETPVSYA
                     QKHGAKGLVLIPRNFERTWRYGPRLLGRASYSVPRLTGGSASEEDEDDEDKPEPPGVV
                     SIIPSREMLAALFAGERAEGAGIIQAALGAGGAEPLKSFALSPEKRLRMSVRLTAEDA
                     STQNVVGIVEGRDSVLKKEYVALGAHYDHVGTAARGYGCRPVGSDSICNGADDDGSGT
                     TALLAMAEAFSKGKRPRRSVLFVWHAGEEHGLWGSEYFTEFPTVPLENVVAQLNIDMI
                     GRSKRPGDTNPRNRMLSGPDEIYVIGSRMMSTELAELSESVNRSLLGLKFNYHYDEPG
                     DPERLFYRSDHFNYAKKGIPIIFYFDGIHEDYHQPTDSADKIDYEKLEKVTRTVFVTA
                     SELANAPRRPAIDKRLPPERMTR"
     gene            4971..5043
                     /locus_tag="VD968_04290"
     tRNA            4971..5043
                     /locus_tag="VD968_04290"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5004..5006,aa:Arg,seq:ccg)
     gene            5113..>8207
                     /locus_tag="VD968_04295"
     CDS             5113..>8207
                     /locus_tag="VD968_04295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13644.1"
                     /translation="MLRRLPVCLLSLSVLLSSFVTLPARAQQPAAAAAQDAAKKNEPW
                     DVEGDHGPATTIEFDTDEGTWMSCDVSPDGQKIVFDLLGDIYVMPIAGGRAELLSGGV
                     SWEVQPRWSPDGKWVAFTSDRDGGDNIWVIGADGQNRRQVTKETNRLLNTPAWTPDGQ
                     YLLARKHWTDARSAGAGEIWMYHINGGGKGVQLTEKPNWTANIGEPVVDPKGRFVYFV
                     SSGAFDYNKNVYDNIYWIDRYDLEKGRRSTFVRGAGGSIRPQVSPDGKLLSFLRRVGL
                     KTVLFVREIETGREWQVFDGLTRDQQETWALFGTYPGYSWTPDGKAIVITAGGKFLRI
                     NVETKQAAPIPFTARVSQKVSDAVRFPVKVAPERDRARLLRWAERNGDRVIYSALGKL
                     HVKEGDAAPRRLEITEDGTGGATGDRYLVYAPNFSLDGRRITFVTWNDAEKGAVWVAS
                     SDGTGARKITTAADQYANPVFSADGSKVAYLKGRGSVYHEENLASESQFEIHYWDGRR
                     HNYVMDLQSRGPNARMPVLTFDPEGERLFFMEAGGGPGPSPTAPAQFITYLSSVKLDG
                     DDFKRHIEGNYVTEIIPSPDFKWVFFKELHKLYVAPLPKVGKPVKLSSTETGVPVKSV
                     STASGAWLSWSPDSKSVQWTLGEDFYEQSLDNVFRALAKDEKIPEPRRTRIGFDFETA
                     RPRGSVALTNARIVTMRGDEVIERGTILVEDNRIKAVGARVQIPAGAKRIDLAGKTVT
                     PGLIDVHAHMGYDTLDIIPERQWPYWANLAYGVTTTHDPSASTQTVFAQSEMVKAGVM
                     VGPRVFSTGYILYGAESPEKAVVNSYTDARGHLERLKAVGAFSVKSYNQPRRDQRQRI
                     IRAARDLSMMVVPEGGSTLHANMTQILDGHTGIEHAIPVAPLYKDARTLFARSRTQYT
                     PTLIVGYGGIWGENYWYQHSNVYENRKLLRFTPRKVIEPRARRRMMAGEDDFYHFELA
                     KVVKDYVRAGGKAHLGAHGQLQGLGAHWELWMLQQGGLTNLEALRAATLHGAQYLGLD
                     G"
BASE COUNT         1267 a         2801 c         2745 g         1394 t
ORIGIN      
        1 cgacgcttct gcttttgctc gcctccgcgc cctacgtcgt cgcagacatc gcgcgcccgg
       61 ccgaaagtaa gcccgactac aaccgcgtcc gcgcagacct gccgcgccgt tacatgctaa
      121 tcgagtcgcg gcccgaggcg cgcgaggcga ggctccgcgt gccgcgctcg ctgctcgaag
      181 agctggcgcc cgcttcttcg caggcgactg ggggggccgc catcttcggc gcgacgcccg
      241 cgcggacggt cgtcgccggc gtcttcctct cgctctcgct ggcgctcgcg gggatgctgc
      301 tggcgcgctc gcgccgtcag gccgtggggc gcgtggccgt cgtcgccatc gggagcttgg
      361 cgtgcgcggc cgccttcgcc gtcggcgcgc tagccaacgt aggcccgccg cctcggccga
      421 acgccctcga cccgcagacg ctagtcaagg ccgtctcggc gggcgcgacg atttcgggcg
      481 acgtgcgcgt ggagattgtc gaggacggcg acgagctgaa gctcgtagtc cctacgagga
      541 accgcgcgag aggtgacgac gagtagcatg cagagcgtcg tcgagctgaa gggcttgcgg
      601 caaagcggcg agggcgcgcg gcgcgcggcc ctgcccttcg ccgccgcgtg ctctctcgcg
      661 ctcctgggcg cgggcgcgct cgcgggctgg gcgcccgtgg ggctctcggt cgtgacggtc
      721 ttcctcttcg cggggccgca caactggttc gagttccgct acttcgtctc gcggctgccc
      781 gtgagctggg ggcagtcgcg caacttcttc gcgacggcga ttgcgggcgt ggtgctgctg
      841 actgccggct acgccgcgct gccgctgctg ggcagcgcgc tcgtctggtc gggctcggag
      901 tggagcacgg cggcggccgt gtggaacagc ctgctgatag gctgggtggc gctgctcgtg
      961 ctccttcgcg ggcggctctc gccgcgccgc gactggagct gggcgctgcc ggtgggctcc
     1021 tcgctcgtcg cgctcaactg gctcgcgccc tacgcgctca gcctcgccct cgtctatctg
     1081 cacccgctcg tggcgctctg gttcctcgac cggcagctcc ttcgcacgcg ccgcagttgg
     1141 agccgcgcgt accgtctctg cctgctcgcc ctgcccgtcg tgctgtgcgc gctctggtgg
     1201 aagctagcgg ccgcgccgcc gctcctcgcc gacgacgagc tgtctcttcg catcgtgcgg
     1261 cacgcaggcg cggacatgct cgccggggtc tcgtcgcacc tcctggtctc gacgcacgtc
     1321 ttcttagaga cgctgcacta cggcgtctgg ctcgtcgcta tgccgctcgc gggcgcggcg
     1381 gccgcgccgt ggcggctgcg ctcgatcccg ctcgtgcgcc acccgagggg ctggccgcga
     1441 ctcgtggtga cggcgctagt cctcggcgcg gcggcggtcg tcgccctctg gctctgcttc
     1501 gcggccgact acccgacgac gcgcgacatt tacttcaccg tggccgtcgc gcacgtcctc
     1561 gcggaagtcc ccttccttct gcgcatgctg taggcgaggg gatgcgagct tccgacctct
     1621 ggctcttcct gcccttcggc tacgccctca cagtcctact tgagacacca gtgctcgccg
     1681 tcgccctctc gcgcaggcac acgctccggc gccgtctcct cgcgggcctg tggctgacgg
     1741 cctgcaccta ccccgtcgtc gtgctcgtgc tcccgctgat attggaaggc tactcgcgcg
     1801 cggcttacct gaccgtcgcg gaaatcttcg cgcccgctgc cgagtgcgcg ctcttcctcg
     1861 ccgccttcgg cctcggcgga ggcgggggcc gccgcgacgc ccttcgcgac tgcgcggcga
     1921 taacggcggc caacctgctc tccttcggcg caggcgaagt gctcggagcc ttcggctggc
     1981 tcggcctctt cagcgcggcc gccaaatagt taaggacagt cgcaacagtc cccttacgtg
     2041 gccggagtta ggccaggtct tatagccaca gcctgagcgc gctgaacagc cctctgcggc
     2101 ggtgggtgag ctgccgggcc ggacgactgt gaggccgcga tgatctacgc gaagtcatag
     2161 tgcctggtga tgacgggacc ggcgtcggcg agggcgaata atgatttcat cgccggctcc
     2221 ttacgtgctt tgatagggcc gggcgtgccg tacagagttc ggcctcccgt taagggcggg
     2281 gcaaaaggcg cgggggccta cggccgtgct attcgattcg agtagatgag aaaatccccg
     2341 tccctgccgg aaaggcgcag tccggccgcc tcggcggcct tgcgggacgc cacgttgccg
     2401 gtgcgtatgt aagcctcgac ggggccgtgg gtggattcga cgagcgccca caccatcggg
     2461 tagctgagcc tgcgccccct gtgatccggc gcgagaagcc aactgagttc ccacgcctca
     2521 cccctccact cggccctggc ataacccgcg ggctcgcctt cgacttcgac tatgtaaatg
     2581 cttttgaggg ggtcgcagag tgaggcgggg aaccatcggg cgtgttcctc aaagggtatg
     2641 ggtaatagcg tccggctcgc cgcgagcgcg gcccgttcgt tacgccacgc cagaagcctc
     2701 tctgagtcct caagccgggc gggccgcagc gtcaggattg ctgtcgtcgg gagtgccgct
     2761 gcgttgctct taatgcccat gtcagcaccc tgtatagcgt gaagagggtg acaatggccg
     2821 acgcggtggc gaggtaatgt ctaactaaca cgggcggcgc cggctgtagg ccgagtttgg
     2881 cctcggggcg cttcagaggg tttgaaaggg cgtctattgc cgggaaaaag atgggccgtg
     2941 taggactcga acctacgacc cgatgattaa gagtcatctg ctctaccaac tgagctaacg
     3001 gcccgggttt aagacaaatt acacggcgcg ccgagcgggt gtcaagaagg ccgcccgcgc
     3061 gccgcctagc gcgtcatgcg ctctggcggg agccgcttgt caatggccgg gcgccggggc
     3121 gcgttcgcca gctccgaggc cgtgacgaag accgtgcgcg tgaccttctc cagcttctcg
     3181 tagtcaatct tgtcggcgct gtccgtgggc tggtggtagt cctcgtggat gccgtcgaag
     3241 tagaagatga tgggtatgcc cttcttcgcg tagttgaagt ggtcgctgcg gtagaagagg
     3301 cgctcggggt cgccgggctc gtcgtagtgg tagttgaact tcaggccaag gagcgagcgg
     3361 ttgacagact cgctcaactc cgcaagctcc gtgctcatca tccttgagcc gatgacgtaa
     3421 atctcgtcgg ggccggaaag cattcggttg cgcgggttcg tgtcgccggg gcgcttgctg
     3481 cggccgatca tgtctatgtt gagctgcgcg acgacgttct ccagcgggac ggtcgggaac
     3541 tcggtgaaat actccgagcc ccagaggccg tgctcctcgc cagcgtgcca cacgaagagg
     3601 acggagcggc gagggcgctt acccttcgag aaggcctcgg ccatcgcgag cagcgcggtg
     3661 gtgccggagc cgtcgtcgtc cgcgccgttg catatcgagt cggagccgac gggccggcag
     3721 ccgtaacctc tggcggccgt gccgacgtgg tcgtagtggg cgccgagcgc gacgtactcc
     3781 ttcttgagaa cggagtcgcg gccctcgact atgccgacga cgttctgcgt gctcgcgtcc
     3841 tcggccgtga gcctgacgct catgcgcagc cgcttctccg gcgagagcgc gaaactctta
     3901 aggggctcgg cgccgcccgc cccgagcgcg gcctgtatga tgcccgcgcc ttcagcccgc
     3961 tccccggcga agagcgccgc gagcatctcg cgcgagggga ttatcgagac gacgcccggc
     4021 ggctcgggct tgtcttcgtc gtcttcgtcc tcctcactcg cgcttccgcc tgtgaggcgc
     4081 ggcacggagt agctggcgcg ccctagcagg cgcgggccgt agcgccacgt gcgctcgaag
     4141 tttcggggta tgaggacgag gcccttcgcg ccgtgcttct gcgcgtagct tacgggcgtc
     4201 tcccagtcgc cgcccggcag agcctttatg tccgcgttcg tcacccccgg cggcggcgca
     4261 gtcccgttgc cggcgacgac gacgatcttg tctttaacgt ctatcccctc gtatgcgttg
     4321 acgcccttcg agcgaatgac ccagccgtgg ccggcataga cgagctgccc ctcggcctcg
     4381 ccgctcacgc ggcccgtcgg caggaagccc tcgccgacgc ggaacttgcg gtcgccgagc
     4441 tgcgcggagg tgttctccaa atccacctgc gtgcggcgca gcttgatgcg ctggaaatag
     4501 gagcccttgt cgccggccgg cttcagcttg agcttcttga ggcggtcggc gatgtacttg
     4561 gccgtggcgt cgaggccctc ggagggcgtg tcgcgccccg ccatctcgtc cgaggcgatg
     4621 aagtagagaa tctccttcag cttgtctgcc gtgatgcgct cggcgctaga gcgcgcggcc
     4681 gcgaaggtcg gcgacgcagc cgcgcccgcg gccggagcga cagcagcggc ggcgccgccc
     4741 gacccgccag ccgactgcga ccatgccggc agcggcggca caaggaacga cacgccgagc
     4801 aagagcgcca gcgccgtcaa gttaaacttt cgcatctact ctccgtttca ccgaaatgtt
     4861 ggggttcgtt cgatgatagc gcgcgccgcc cgagttcgcc agcgagcgcg caccgggcgc
     4921 tcctcaaccc ttttgcgcgc catccgcatc tatgcgagaa tgctccacgc gcgcctgtag
     4981 ctcagtggat agagcacctg cctccggagc agggggccgc acgttcgagt cgtgccaggc
     5041 gcaatttact tcctcttcct ttaaacgaaa caaccgcccg agactttgaa cgcccaggtg
     5101 tgaggtgaaa ctgtgctcag aagattgccc gtctgcctgc tctccctgtc agtcttgctt
     5161 tcgtccttcg tgacccttcc ggcgcgggcg cagcagcctg ccgcggccgc cgctcaggac
     5221 gccgcgaaga agaacgagcc gtgggacgtg gagggcgacc acgggcccgc gacgaccatc
     5281 gagttcgaca cggacgaggg aacatggatg agctgcgacg tgtcgccgga cgggcaaaag
     5341 atcgtcttcg acctgctcgg cgacatctac gtcatgccga tcgcgggcgg gcgggcggag
     5401 cttctatcgg gcggggtttc gtgggaggtg cagccgcgct ggtcgcccga cggcaagtgg
     5461 gtcgcgttca cctccgaccg cgacgggggc gacaacatct gggtcatcgg cgccgacggc
     5521 cagaaccgcc ggcaggtgac gaaggagacc aaccgccttt tgaacacccc ggcgtggacg
     5581 cccgacgggc agtacctgct cgcgcgcaag cactggacgg acgcgcgctc ggccggcgcg
     5641 ggcgaaatct ggatgtacca cataaacggc ggcggcaagg gcgtgcagct cacggagaag
     5701 ccgaactgga cggccaacat cggcgagccc gtcgttgacc ccaaagggcg cttcgtctat
     5761 ttcgtctcct ccggcgcgtt cgactacaac aagaacgttt acgacaacat atactggata
     5821 gaccgctacg acttggagaa ggggaggcgc tcgaccttcg tgcgcggcgc gggcggctcc
     5881 atccggccgc aggtctcgcc cgacggcaag ctactctcgt tcctgcgccg cgtggggctg
     5941 aagaccgtgc tcttcgtccg cgagattgag acgggccgcg agtggcaggt cttcgacggc
     6001 ctcacgcgcg accagcagga gacctgggct ctgttcggca cgtaccccgg ctactcctgg
     6061 acgcccgacg gcaaggcaat cgtcatcacc gcgggcggca agttcctccg cataaacgtc
     6121 gagacaaagc aggccgcgcc catccccttc accgcccgcg tctcgcagaa ggtgagcgac
     6181 gccgtgcgct tccccgtcaa ggtcgcgccc gagcgcgacc gcgcgcgcct tcttcgctgg
     6241 gccgagcgca acggcgaccg cgtcatctac agcgcgctcg gcaagctcca cgtcaaggag
     6301 ggggacgccg cgccccgccg cctggaaatc acggaggacg gaacgggcgg cgccacgggc
     6361 gaccgctacc tcgtctatgc tccgaacttc agcctagacg gccgccgcat aaccttcgtc
     6421 acgtggaacg acgcggagaa gggcgccgtc tgggtcgcga gctccgacgg tacgggcgct
     6481 cggaagatca cgaccgccgc cgaccagtac gccaaccccg tcttctcggc ggacggctcg
     6541 aaggtcgcgt acctcaaggg gcgcgggagc gtctatcacg aggagaatct ggcgagcgag
     6601 tcgcagttcg agattcacta ctgggacggg cgccgccaca actacgtgat ggacttgcag
     6661 agccgcggcc ccaacgcccg catgcccgtg ctcaccttcg acccggaggg cgagcgactc
     6721 ttcttcatgg aggccggcgg cggccccggc ccctcgccca cggcgcccgc ccagttcatc
     6781 acgtaccttt cgagcgtcaa gctcgacggc gacgacttca agcgccacat cgagggcaac
     6841 tacgtcacgg agataatccc ttcgcccgac ttcaagtggg tcttcttcaa agagctgcac
     6901 aagctctacg tcgcgccgct gccgaaggtg ggcaagcccg tcaagctcag ctccaccgag
     6961 acgggcgtcc ccgtcaagag cgtctcgacg gcgtcgggcg cttggctgtc ttggtcgccc
     7021 gacagcaagt ccgttcagtg gacgcttgga gaggacttct acgagcagag cctcgacaac
     7081 gtcttccgcg cgctcgccaa ggacgaaaaa atccccgagc cgcgccgcac gcgcataggc
     7141 ttcgacttcg agacggcgcg gccccgcggc tccgtcgccc tcaccaacgc gcgcatagtt
     7201 accatgcgcg gcgacgaggt catcgagcgc ggcacgatcc tcgtcgagga caaccgcatc
     7261 aaggccgtgg gcgcgcgcgt ccagattccg gcgggtgcca agcgcattga cctcgcgggc
     7321 aagaccgtca cccccggcct catagacgtt cacgcccaca tgggctacga cacgctcgac
     7381 ataatccccg agcgccagtg gccctactgg gcgaacctcg cctacggcgt gacgacgacg
     7441 cacgacccct cggcctccac ccagaccgtc ttcgcgcagt ccgagatggt caaggctggc
     7501 gtgatggtcg gcccgcgagt cttctcgacg ggctacatac tctacggcgc ggagagcccc
     7561 gagaaggccg tcgtcaactc ctataccgac gcacgcggcc atcttgagcg cctcaaggcc
     7621 gtcggcgctt tctccgtcaa gagctacaac cagccgcggc gcgaccagcg ccagcgcatc
     7681 atacgcgccg cgcgggattt gagcatgatg gtggtgccgg aggggggctc gactctccac
     7741 gccaacatga cgcagatact ggacggccac accgggatag agcacgccat acccgtcgcg
     7801 ccgctctaca aggacgcgcg cacgctcttc gcgcgcagcc gcacgcagta cacgccgact
     7861 ctcatcgtcg gctacggcgg aatatggggc gagaactact ggtatcagca ctcgaacgtc
     7921 tatgagaacc ggaagctcct gcggtttacg ccgcgcaagg tgatcgagcc gcgcgcgcgc
     7981 cgccgcatga tggccggcga ggacgacttt taccacttcg agctggcgaa ggtcgtgaag
     8041 gattacgtcc gcgccggggg caaggcgcac ctcggcgcgc acgggcagtt gcagggcctg
     8101 ggcgcgcact gggagctctg gatgcttcaa cagggcgggc tgactaactt ggaggcgctc
     8161 agggcggcga cgctgcacgg cgcgcagtac cttgggttgg acggaga
//
LOCUS       DASPKR010000148         3495 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1183213, whole genome shotgun sequence.
ACCESSION   DASPKR010000148 DASPKR010000000
VERSION     DASPKR010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3495)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3495
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1183213"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..357
                     /locus_tag="VD968_04300"
     CDS             <1..357
                     /locus_tag="VD968_04300"
                     /inference="COORDINATES: protein motif:HMM:NF015415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13645.1"
                     /translation="ARVLLPRPAPGARHYYRKVGTRKAQAISKVCFAGLAPVEDGAVR
                     EVRICLGSVAPTVLRCRRTEELLRGRRVDDETIRAAREEIAAEVSPIDDVRSTARYRT
                     RVAQNLLEEFLTALPS"
     gene            650..1399
                     /locus_tag="VD968_04305"
     CDS             650..1399
                     /locus_tag="VD968_04305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13646.1"
                     /translation="MQNYPNSPLPPGGYGMPPQPPQKKGLSKGLKIFIVLALVFVIGG
                     GALLILGGVGFYVLTRRAQEAAGTAGSPLSGLTTSPADDGDEAEGPSPTAEQSAAIAG
                     GQSAEWAQQEISWTVPQKWRQHSADSSSLLWRSPGSWDAASLIANIAPMGSDFPTEVS
                     LNSYYDSFKRDKQKYSDVRWLKLGGIKGVMFRESSPESPDSPQRLQWIGYRDYKGQTQ
                     YVTIMLASRGKDFARHEDALYGILYSTEFSR"
     gene            complement(2006..>3495)
                     /locus_tag="VD968_04310"
     CDS             complement(2006..>3495)
                     /locus_tag="VD968_04310"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE13647.1"
                     /translation="VLALLPFSAAPARSQVKMPTTRIASVLQPSQSPLVTFRLLFMTG
                     SAHDPKGKEGVASLTAAMLAEAGSRSMTYEQIVEAMYPMATSFGWQVDKEMSVFSGTT
                     HADNLEKYYGLIRDMLLDPGFREEDFTRLKADAVNFLKVSLREGNDEELGKEYLYNII
                     YAGHPYEHHSMGRLSSLEKLTLADVRDFYRQNYTQANLIVGLAGGYPAEFASRVEADF
                     AAKLPAGAPKPLKVAQPKVAPGMRVEIVKRETRATAISLGFPIAVNRSHKDWPALALT
                     ASYLGQHRNSASHLYQRLREARGLNYGDYAYVEYFPRGMFQFMPDPNLGRQSQIFQIW
                     IRPVEPQNAHFTLRAALYEFDKLVRNGMPQADFESMRNFLMKYSDVLTATQNARLGYA
                     LDSRYYGIGDYGQFMREQLSRLTLADVNRAIRQHLKGDRLRVVVVTKDAESLRDAIVK
                     GAPSPITYNSPKPADILAEDKVIEKYKINVRPAQVVIVPVERVFQ"
BASE COUNT          611 a         1137 c         1184 g          563 t
ORIGIN      
        1 gcgcgcgtgc ttctgccgcg cccggcgccc ggcgcgcgcc actactaccg caaagtcggg
       61 acgagaaagg cgcaggccat ctcgaaggtc tgcttcgcgg ggctcgcgcc cgtcgaagac
      121 ggcgccgtgc gcgaagtgag aatctgcctg gggagcgtcg cgcccacggt gctccgctgc
      181 cgccgcactg aagagcttct gagggggcgc cgcgtggatg acgagacaat ccgcgccgcc
      241 cgagaggaga ttgcggcgga agtctctccg attgacgacg tgcgctcgac ggcccgctac
      301 cgcacgcgcg tcgcgcagaa cctgctggaa gagttcctga ccgcgctgcc gtcttaaaac
      361 ttcctcactg acgagcgccg cgagggccgg gtggcctacc cagcgggcga gctgcgagtt
      421 gacgccggcc tgcaagggca tcagcgcccc cgccatcagt gcgattaaca gatagaccca
      481 ggccatcggc tctccgaaga gggagtatcg gtctttaagt aaaggcgccc gccagtataa
      541 cgcctcgccg ccgcgcttcc cgaaaactga ttaccgattc gcgcccgtcg tgatatagtc
      601 ccgcgccgtg ccagcccgtt gaataccaac cgaaggagcc gcaaaagata tgcagaacta
      661 tcccaactcg ccgctgccgc cgggcggcta cggcatgccg ccgcagcctc cgcagaagaa
      721 gggcctctcg aagggcctga aaatcttcat cgtcctcgcg ctagtcttcg tcatcggcgg
      781 cggggcgctc ctgatactcg ggggcgtcgg cttctacgtc cttacgcgca gggcgcagga
      841 ggccgcgggc acggccggct cgcccctcag cggccttacc acttcgcccg ccgacgacgg
      901 cgacgaggcc gaagggcctt cgcccaccgc ggagcagtct gcggcgatag ccggcggcca
      961 gtctgccgag tgggcgcagc aggagatttc gtggacggtg ccacagaagt ggcgccagca
     1021 ctcggccgac agctcgagcc tcctgtggcg ctcgcccggc agttgggacg ccgcttcgct
     1081 catcgccaac atagcgccga tgggctcgga cttcccgacc gaagtgagcc tcaacagcta
     1141 ctacgacagc ttcaagcgcg acaagcagaa gtacagcgat gtgcggtggc tcaagctcgg
     1201 cggcataaag ggcgtgatgt tccgcgagtc atcgcccgag agcccggaca gcccgcagcg
     1261 cctacagtgg ataggctacc gcgactacaa gggccagacg cagtacgtca ccatcatgct
     1321 cgcctcgcgc ggcaaggact tcgcccgcca cgaggacgcg ctatacggga tactctactc
     1381 gaccgagttc tcgcggtagc cgaagctcag ggggaaagtg gccgcgggcg ggagaaccgc
     1441 tcgcggccac tttcgtttga aacgtatcaa ctgccggagg cataacgaca gggacgggga
     1501 ttatgtctcg ccccgcccgg cggacgatgc cgcgtccgca taccagcaga aaggagcatc
     1561 actaagtgac aaagaaaaag ccggtgagta agaaggtcgg gcgaaagcaa acggcggggg
     1621 gtggcgccgc ggcccgcccc ccgaaggcga ccaagcaggc agggccggat gagcgcggcg
     1681 cgcgcccggc gccggacgtg gacgaactga tccaaggagt gctggcgctt atagaacagt
     1741 atctgcttcc tgcgtcacgg cgcgctttct ccatccccgc cccgccccgg cccggcccga
     1801 gcccgagccc cagcccttca ccgaggccag gccacccgac cgtgccgggc ggcggcctgc
     1861 agcccgcgcc gaccatgccg gacaccgacg gcttctggag agggctggag gaccttaggc
     1921 gacggcagca cccaatctaa gaatgaggcc ggccgcgccg ccagcactgg cggcgcggcc
     1981 ggccacggca cacgagagcc cccgcctatt ggaacactcg ctcgaccggc acgatgacga
     2041 cctgcgccgg gcggacgttg attttgtatt tctcgattac cttgtcctcg gcgagtatgt
     2101 cggccggctt gggcgagttg taggtgatgg gcgagggcgc gcccttgact atcgcgtcgc
     2161 gcaaggattc ggcgtccttc gtgacgacga cgacgcgcag acggtcgccc ttcaggtgct
     2221 ggcgtatggc gcggttcacg tcggccaggg tcaggcgcga gagctgctcg cgcatgaact
     2281 ggccgtagtc gccgatgccg taataccggc tgtcgagcgc gtagccgagc cgcgcgttct
     2341 gcgtggccgt gagcacgtcc gagtacttca tcaggaagtt gcgcatggac tcgaagtcgg
     2401 cctgcggcat gccgttccga acgagcttgt cgaactcgta gagcgcggcg cgcagcgtga
     2461 agtgcgcgtt ctgcggctcg acgggccgaa tccatatctg gaaaatctgc gactggcgcc
     2521 ccaggttcgg gtcgggcatg aactggaaca taccgcgcgg gaaatattcg acgtacgcgt
     2581 agtcgccgta gttcaagccc cgcgcctcgc gcagccgctg gtagaggtgg ctcgcgctgt
     2641 tgcggtgctg gccgaggtaa gaggccgtga gcgcgagcgc cggccagtcc ttgtgcgagc
     2701 ggttgacggc gatggggaag cccagagaga tggcggtcgc gcgcgtctcg cgcttgacta
     2761 tctcgaccct cattccgggc gcgaccttcg gctgcgcgac cttcaggggc ttcggagcgc
     2821 ccgcgggcag cttcgcggcg aagtccgcct cgacgcgcga tgcgaactct gccgggtagc
     2881 cgcccgcgag cccgacgatc aggttggcct gcgtgtagtt ctgccggtag aagtcgcgca
     2941 cgtccgcgag cgtaagcttt tctagcgacg agagccgtcc catgctgtgg tgctcgtagg
     3001 ggtggccggc gtagatgatg ttgtagaggt actccttgcc cagctcctcg tcgttgccct
     3061 cgcgcaggga gaccttgagg aagttgacgg cgtcggcctt cagccgcgtg aagtcctcct
     3121 cccggaagcc ggggtctagg agcatgtcgc gtatgaggcc gtagtacttc tcgaggttgt
     3181 cggcgtgcgt cgttcccgag aagacgctca tctccttgtc aacctgccag ccgaaggacg
     3241 tagccatcgg gtacatcgcc tcgactatct gctcgtaagt cattgagcgc gagccggcct
     3301 cggcgagcat cgcggccgtc agcgacgcga cgccctcctt gcccttgggg tcgtgggccg
     3361 agcccgtcat gaagagcagg cggaaggtta cgagcggcga ctgcgaaggt tgcagtacgc
     3421 ttgcgattct tgtcgtcggc atctttacct gcgagcgggc cggggctgcg gagaagggga
     3481 ggagcgccag caccg
//
LOCUS       DASPKR010000149         6423 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1442597, whole genome shotgun sequence.
ACCESSION   DASPKR010000149 DASPKR010000000
VERSION     DASPKR010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6423)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6423
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1442597"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..914)
                     /locus_tag="VD968_04315"
     CDS             complement(<1..914)
                     /locus_tag="VD968_04315"
                     /inference="COORDINATES: protein motif:HMM:NF024634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HYE13648.1"
                     /translation="MKKAQLFVILALLAMLAAINLWSKDPSKSFFGGLPWWGWAAVSL
                     SLLVAALWFVLRDARRARLLLENPLPIKEEEDGGAIKLTREQLEKYDPDGPEYPHPVI
                     ITERCIGCHACVDACPHDVLSIVNGFATPVARDQCMEDTACQVECPVNPKACIVVNTT
                     KKIPPRKVPNRDSSFQTNVPGCYIIGDVSGTPLIKNATNEGADCVRFIAEELRSGAAP
                     EPKAQVEVAIIGVGPAGLSAAMTAQKLGLSYVAIEQDRVLATIEAYPANKYVFFKPET
                     MEARGGVRPDGAGAQREAILEAWAAAMR"
     gene            complement(943..2439)
                     /locus_tag="VD968_04320"
     CDS             complement(943..2439)
                     /locus_tag="VD968_04320"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HYE13649.1"
                     /translation="MQTQASRFIIEREDLDVDPVTVTADGLRVGRLPSCELVLNHPTV
                     SRLHAGINGADGRFYLFNFSSSSATTLNGRVIQTEAAEVLADGDVVQIGPFFLYVGRE
                     GDDALSLRVTLEVAVNAGDAEARPESIPPAPVAARQPRAGQPSVEMARALNVFWEKRK
                     REAGKMHRQSLLRPQKPMRVLGKARFNWTPTRDLVRPWPFSVFVWGFAAVAVFAVVAA
                     LTYAQAFSPAPISTAHSRGAIQSNPPIAQRANAGSCTSCHTLAASVESSCASCHRTDA
                     FKATVTKKHVEAGVGCTACHVEHQGTEHRPAVASLETCTNCHNDANKKTFNGRRVGTA
                     HGGAHGYPVTAGAWSWPGLPEEEWAQKSPETRKLVSQMANAVRKPTEKRDPEDVRRSA
                     EFHALHIHRVKAPAGWPSNREGEMSCSSCHRAFSPIDRETPRTTCGACHNGDRGGKFE
                     AVLAADRPNCISCHVQHVEGRRSWGRSMLAAAAEEAPSRNAPADAPRR"
     gene            complement(2445..4919)
                     /locus_tag="VD968_04325"
     CDS             complement(2445..4919)
                     /locus_tag="VD968_04325"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HYE13650.1"
                     /translation="MPREIKKHKTILDAIGKVDIISELLSRRDGHFEHELDLEVIAYG
                     RNYNGKKVGPYVQLLEYDAGEHVVREGDWGGNTFYITVDGALDVLVRDPETGQDRKVG
                     EIQPGASFGEMSVLAGVPRNATVAVPAGSKARVLEVRRPALRLLRKLPKFGQALDQNY
                     RKHGLGRTLIDVRQATGNAFSPELIEKLGRSARFTVYAKHHALFREGDPIDRIIFIRN
                     GWVRRVRGLTKGAVIGEMLVAGLGEGAGVDFLGAGNCLGLEGVERDAEWAYTATVLQR
                     TEVLEVAVPRLRADRELRETLVKTFSEFSLADDDVRVSSGLDRFLISATEREIATGVV
                     DGTNLLVMDMDKCVRCGNCSMACHQVHGRSRLLRRGIHIERPKRPGSQAEQHVLVPSV
                     CMHCQDPECLTGCPTGAIGRFENGQIDIDPKTCIGCGDCATQCPYNAITMIPRKAEAV
                     PPKTLAGRLKGWLSLAPPAPPQPVTAIDNLLATKCNLCAGTALNPPGAKRAAYSCEEN
                     CPTGALVRVNPREYFTEVNTRLGLAYRDQTHAVGRDIHKRDPVARLWHALGILMTIAA
                     TGGTIWGMLRYGLDEPIGGTWLTMRWLTGLVGLGGVAAVMTYPARKQVYRRRAGALRY
                     WMLAHVYLGIVAGIVLLLHGGRTTGGLLTSLLMISFDAVILTGLFGVAVYLVVPRVMT
                     SIEGEPLLVEDLRARRDELSETLAEVGQRSSESLREFIRKRVRGKVFSFSYLLRQYLK
                     REPLSELLAAARENYEEEARGLDPESRQLLLEAVEATVTLRRVDSLIYLHQLLKLWLA
                     PHVVATSLMLALMLVHVIQVVLFAAR"
     gene            5220..5885
                     /locus_tag="VD968_04330"
     CDS             5220..5885
                     /locus_tag="VD968_04330"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE13651.1"
                     /translation="MSATYPTNELLFSAAAAAAEVSLPAVEVTEAMSDHRLLEATRGG
                     DEAAFAEIVRRYRNQITNYVYRMTNDYDLAVDLAQETFMRVYLAAERYQTSFAFSTYI
                     YRIATNLAISELRRRKRRRLVSLTGFFRESERGGEAAELDLPDLSPLQDTSVAEGERR
                     AAVARAIATLPEKYRAPLVLRDVEERSYEEIASILQMSEGTVKSRINRARSFLRDKLR
                     AYI"
     gene            5898..>6423
                     /locus_tag="VD968_04335"
     CDS             5898..>6423
                     /locus_tag="VD968_04335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13652.1"
                     /translation="MRDCKATRVEIEEASGALPLGGAAREHVAACAACKEFYAECASL
                     RRLVGELERVSAPDDFDRRLRARMASAGASKRNGRPALFRLAFVPVAAAACLLVGAAG
                     SLYVWQQRKMTPAVATQAGGEGGRARPVQVAESREGEGAAASAARNDESGADSNDAAP
                     ANADNTSGRGQKTVR"
BASE COUNT          992 a         2078 c         2294 g         1059 t
ORIGIN      
        1 tcacgcatcg ccgccgccca cgcttcgagg atggcctcgc gctgcgcgcc cgcgccgtcg
       61 gggcggacgc ctccgcgcgc ctccatcgtc tcgggcttga agaagacgta cttgttcgcc
      121 gggtaggctt cgatggttgc gagcaccctg tcctgctcga ttgccacgta ggagaggccg
      181 agtttttggg cagtcatcgc ggccgagagg ccggcggggc ctacgccgat gatggcgacc
      241 tcgacttgcg ccttcggctc gggcgccgcg ccagagcgaa gctcctcggc gatgaagcgc
      301 acgcagtcgg cgccctcgtt agtggcgttc ttaatcaggg gcgtccccga aacgtcgccg
      361 atgatgtaac agccggggac gttcgtctgg aagctcgagt cgcggttagg caccttgcgc
      421 ggcggtatct tcttcgtcgt gttgacgacg atgcacgcct tcgggttgac ggggcattcg
      481 acctgacagg ccgtgtcctc catgcactgg tcgcgggcga cgggcgttgc gaagccgttg
      541 acgatggaga gcacgtcgtg cgggcatgcg tcaacgcagg cgtggcagcc gatgcagcgc
      601 tcggtgatga tgacggggtg cgggtattcg gggccgtcgg ggtcgtactt ctctagctgc
      661 tcgcgcgtga gcttaatagc cccgccgtcc tcctcttcct taataggcaa agggttttcg
      721 aggaggaggc gtgcgcgccg cgcgtcgcgc aggacgaacc agagcgccgc gaccaggagg
      781 gagaggctga cggcggccca gccccaccag ggcaggccgc cgaagaagct cttactcggg
      841 tctttcgacc agaggtttat cgccgcgagc atcgcgagca gggcgagtat gacgaatagc
      901 tgtgccttct tcataagtcg gggttgaaag gtgcggcgcc gctcacctgc gcggcgcgtc
      961 ggccggggcg ttgcggctcg gcgcctcctc ggcagcggcc gccagcatcg agcggcccca
     1021 cgagcggcgg ccctcgacgt gctgcacgtg gcaggagatg cagttcggcc ggtctgcggc
     1081 gagcaccgcc tcgaacttgc cgccgcggtc gccgttgtgg cacgcgccgc aggtcgtgcg
     1141 cggcgtctcg cggtcaatcg gcgagaaggc cctgtggcac gaagagcatg acatctcgcc
     1201 ctcccggttc gagggccagc ccgccggcgc ctttacgcgg tggatgtgca gggcgtggaa
     1261 ctcagcgctg cgtcgaacgt cctcggggtc acgcttctcc gtcggcttcc tcacggcgtt
     1321 cgccatctgc gagacgagct tgcgcgtctc cggcgacttc tgcgcccact cctcctcggg
     1381 cagccccggc caagaccatg ccccggccgt gacggggtag ccgtgcgcgc cgccgtgcgc
     1441 ggtgccgacg cgcctgccgt taaaagtttt cttgttcgcg tcgttgtggc agttggtgca
     1501 ggtctcaagg ctcgcgaccg ctgggcggtg ctcagtcccc tggtgctcga cgtggcaggc
     1561 cgtgcagcct acgccggcct ccacgtgctt cttcgtgacg gtggccttga aggcgtccgt
     1621 tcggtggcac gacgcgcagc tcgactcgac cgaggcggcc agcgtgtggc aagaggtgca
     1681 ggagcctgcg ttcgctcgct gcgcgatagg cgggttcgac tgaatcgctc cgcgcgagtg
     1741 ggccgtggag atgggcgcgg gcgagaacgc ctgcgcgtaa gttaaagcgg cgacgaccgc
     1801 aaagacggcg acggcggcga agccccagac gaagacggag aagggccacg ggcgtacgag
     1861 gtcccgcgtc ggcgtccagt tgaagcgcgc cttgccgagc acgcgcatcg gcttctgcgg
     1921 gcgcagcagc gactgccggt gcatcttgcc ggcctctcgc ttgcgcttct cccagaatac
     1981 gttgagcgcc cgcgccatct cgaccgaggg ctggcccgcc cgcggctgcc gcgccgcaac
     2041 cggtgcgggc gggatggact ccgggcgcgc ctcggcgtcg cccgcgttga cggcgacttc
     2101 gagcgtgacg cgcagggaga gcgcgtcgtc gccctcgcgg ccgacgtata ggaagaaggg
     2161 gccgatctgc accacgtcgc cgtcggccag cacctcggcc gcctcggtct ggatgacgcg
     2221 gccgttcagc gtggtcgcgc tcgagctact gaagttgaac aggtagaagc ggccgtctgc
     2281 gccgttgatg ccggcgtgca ggcgcgagac ggtcgggtgg ttcaagacta gctcgcagct
     2341 cggcaggcgc ccgaccctca gcccgtcggc cgtgacggtg acggggtcaa cgtccaagtc
     2401 ctcgcgttcg atgatgaagc ggctggcctg agtctgcata gggttcagcg ggcggcgaag
     2461 agcacgacct gtatgacgtg gacgagcatg agcgcgagca tgagcgaggt ggcgacgacg
     2521 tgcggcgcga gccagagctt taatagctgg tgcaggtaaa ttagcgagtc aacgcgccgg
     2581 agcgtcacgg tcgcctcgac cgcttcgagg aggagctgcc gcgactcggg gtcgagcccg
     2641 cgcgcctcct cctcgtaatt ctcgcgcgcg gcggcgagaa gctcggagag cggctcgcgc
     2701 ttcaggtatt ggcgcaggag gtatgagaag gaaaagacct tgccgcgcac gcgcttgcgt
     2761 atgaactctc ggagcgactc gctgctgcgc tggccgacct cggccagagt ctcgctaagc
     2821 tcgtcgcgcc gcgcgcgcag gtcttcgacg aggagcggct cgccctctat gctcgtcatc
     2881 acgcgcggga cgacgagata gacggccacg ccgaagaggc cggtgagtat cacggcgtcg
     2941 aacgagatca tcaggagcga tgtcagcaag ccccccgtcg tcctgccgcc gtggagcagc
     3001 agcacgatgc ctgcgacgat gccgagatag acgtgcgcga gcatccagta gcggagcgcc
     3061 cccgcgcgcc tgcgatagac ctgcttgcgc gccgggtagg tcatcacggc cgcgacgccg
     3121 ccgaggccca cgagccccgt gagccagcgc atcgtgagcc acgtcccgcc aatcggctcg
     3181 tcgaggccgt agcgcagcat gccccaaatc gttccgccgg tcgcggcgat ggtcatgagg
     3241 atgccgagcg cgtgccagag gcgcgccacc gggtcgcgct tgtgtatgtc gcggccgacg
     3301 gcgtgcgtct ggtcgcggta ggcgaggccg agccgcgtgt ttacttcagt gaaatactcg
     3361 cgcgggttga cgcgcacgag cgcgcccgta gggcagttct cctcgcagga gtaggccgcg
     3421 cgtttggcgc cgggcgggtt aagggccgtg cctgcgcaaa ggttgcactt ggtagcgagc
     3481 aggttgtcga tggccgtaac gggctgcggc ggcgcgggcg gcgcgaggct tagccagcct
     3541 ttgagacggc cggcgagcgt cttgggcggc acggcctcgg ccttgcgcgg tatcatcgtg
     3601 atggcgttgt aggggcattg cgtggcgcag tcgccgcagc cgatgcaggt cttcgggtca
     3661 atgtctatct ggccgttctc gaagcggccg atggcgcccg tggggcagcc cgtaaggcac
     3721 tcggggtcct ggcagtgcat gcagaccgag gggacgagga cgtgttgctc ggcctgcgag
     3781 ccggggcgct tcggccgctc tatgtgtatg ccgcgccgca gcaggcgcga gcggccgtga
     3841 acctggtggc aggccattga gcagttgccg cagcgcacgc acttgtccat gtccatgacg
     3901 agcaggttcg tgccgtcaac cacgcccgtc gctatctcgc gctcggtggc cgagattaag
     3961 aacctgtcga ggccggagga gacgcgcacg tcgtcgtctg cgagcgagaa ctccgagaag
     4021 gtcttgacga gcgtctcgcg cagctcgcgg tcagcgcgga ggcgcgggac ggcgacttcc
     4081 agaacctcag tcctttgcag gacggtcgcc gtgtaggccc actcggcgtc gcgctcgacg
     4141 ccttcgagcc cgaggcagtt gcccgcgccg aggaagtcaa cgcccgcgcc ttcgcccagt
     4201 cccgccacca gcatctcgcc gatgaccgcc cctttggtga ggccccgcac gcgccgaacc
     4261 cagccgtttc ggatgaagat gatgcggtca atggggtcgc cctcgcggaa gagcgcgtgg
     4321 tgcttggcat agacggtgaa gcgcgccgac ctgcccagct tctcgataag ctcggggctg
     4381 aaggcgttcc cggtagcctg ccgaacgtca atgagcgtgc ggccgaggcc gtgcttgcgg
     4441 tagttctggt cgagcgcctg cccgaacttc gggagcttcc gcagcaggcg gagcgccggg
     4501 cggcggactt ccagcacgcg cgccttcgaa ccggcaggca ccgcgaccgt ggcgttacgg
     4561 ggcacgcccg ctagcacgga catctcgccg aaactcgcgc cgggctggat ttcgccgacc
     4621 tttctgtcct gccccgtctc ggggtctcgg acgagcacgt cgagcgcgcc gtcaaccgtt
     4681 atgtagaagg tgttgccgcc ccagtccccc tcgcgcacta cgtgctcgcc ggcgtcgtac
     4741 tccaggagct ggacgtaggg gccgaccttc ttgccgttgt agtttcggcc gtaggctatg
     4801 acttccaggt cgagctcgtg ctcgaagtgg ccgtcgcggc gcgagagtag ttccgagatg
     4861 atgtcaacct tcccgatggc gtccaggatg gtcttgtgct tctttatctc tctgggcata
     4921 cggctcaggc tttgaagaat taagaaggag cagccgctgt aagaagtgct gaaagcttaa
     4981 aagaggccgc attataacac ccgagcgcgc gcccgcgggc gccgaaattt tggaacccgc
     5041 ccggcggccc cgcgtgtacg aggggtgtcg ggcccggcag ggcggggcgg gggtgtataa
     5101 ttcgcggctg gcagggccgc ggcgcccggc ccccggccag ggcctaaagc gagggggcga
     5161 gcggtcgtgt agagatttac cgtgacgagt tagccgagcg ccgggcctgc ccttcctgga
     5221 tgagcgccac ctaccctacg aacgaactgc tgttctcggc ggcggccgcg gcggcggaag
     5281 tgtctctccc ggcggtggaa gtgacagagg cgatgtctga ccaccgtctg ctagaggcga
     5341 cgcgcggcgg cgacgaggcg gccttcgccg agatcgtccg gcgctacagg aaccagatca
     5401 cgaactacgt ctatcgcatg acgaacgact acgaccttgc cgttgacctg gcgcaggaga
     5461 cgttcatgcg cgtctattta gcggccgagc gataccagac gagcttcgcc ttctcgacct
     5521 acatctaccg catcgccacg aacctcgcca tctcggagct gcgccgccgc aagcgccgcc
     5581 ggctggtctc gctcacgggc ttcttccgcg agagcgagcg gggcggagag gccgccgaac
     5641 tcgacttgcc tgacctctcg cccttgcagg acaccagcgt ggccgagggc gagaggcgcg
     5701 ctgccgtggc gagggcgatt gcgacgctcc ccgagaagta ccgcgcaccg ctcgtcctgc
     5761 gcgacgttga ggagcgcagc tacgaggaga tcgcctccat cctccagatg agtgagggca
     5821 cggtgaaatc gcgcatcaac cgcgcccgct ctttcctgcg cgacaagctg cgggcgtaca
     5881 tttgaggaag taagagcatg agggactgca aagccacccg cgtcgagata gaagaggcct
     5941 cgggcgccct gccgctcggc ggcgcggcgc gcgagcacgt ggccgcctgc gcggcctgca
     6001 aggagttcta cgcggagtgc gcctcgttac ggcgcctggt gggcgagctg gagagggtct
     6061 cggcgccgga cgatttcgac aggcggctgc gcgcgcgcat ggcctcggcc ggcgcctcga
     6121 agcgcaacgg ccgcccggcg ctcttccgtc tcgcgtttgt accggtggct gccgcggcgt
     6181 gcctgctcgt cggcgccgct ggctcgctct acgtctggca gcagaggaaa atgaccccgg
     6241 ccgtggctac acaggccggc ggggaaggcg ggcgggcgcg acccgttcag gtcgctgaga
     6301 gccgcgaggg cgaaggcgcc gccgcttccg cggcgcggaa tgatgaaagc ggcgctgact
     6361 cgaacgacgc cgcgcccgcc aatgccgata acacttccgg gcgcgggcag aagactgtgc
     6421 gcg
//
LOCUS       DASPKR010000150         3892 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1312797, whole genome shotgun sequence.
ACCESSION   DASPKR010000150 DASPKR010000000
VERSION     DASPKR010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3892)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3892
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1312797"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..351)
                     /locus_tag="VD968_04340"
     CDS             complement(<1..351)
                     /locus_tag="VD968_04340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13653.1"
                     /translation="MSTQGNGNKGEDILSEGPNETSVRGIGGNVSGSGPAPESEPGSV
                     VAGRPAPPPGKLTKADFASDQEVRWCPGCGDYAILNNVQKVMPELGIPREKIVFVSGI
                     GCSSRFPYYMNTYGF"
     gene            complement(532..2400)
                     /locus_tag="VD968_04345"
     CDS             complement(532..2400)
                     /locus_tag="VD968_04345"
                     /inference="COORDINATES: protein motif:HMM:TIGR03710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HYE13654.1"
                     /translation="MSAIIDTPPAEELQRNLEELETVTIRFAGDSGDGMQLTGTQFTN
                     TSAVVGNDISTLPDFPAEIRAPAGSLPGVSGFQLNFSSRDIRTPGDQPNVLVAMNPAA
                     LKVNLPDLEDGGTVIINSDEFNKENLKKANYQSSPLEDETLRGYRVHKLPITSLNIRA
                     LQEAGVQLSRKEMDRCKNFFALGVLYWLYDRPMEPTLEWIKDKFGKKPEIQKANEVAL
                     KTGYNFADTTEVFTTHYKVRKAVIAPGKYRKITGNEATAIGFVAAAELAGRPLFYGSY
                     PITPASDILHELSRHKNFGVKTFQAEDEIAAVCAAIGAAFAGHVGLTGTSGPGVALKQ
                     EAIGLAVMTELPLVIVNVQRGGPSTGLPTKTEQADLFQAVWGRNGECPAIVLAPATPA
                     ECFTMAIESVRLAFKYMTPVFYLSDGYLANGAEPWLLPDLNELPKIEINFVTNPEGFM
                     PYARDEGTLARPFALPGTPGLEHRIGGIEKQHLTGNVNYDPENHHFMVMMRQAKVDRA
                     VQDIPDVEVFGDPEGKVLVLGWGSTYGSITSAVEKLRAEGKPVSSAHLRHLNPFPANL
                     GEVLRRFETVIIPEMNLGQLCTMVRAKYLVDAVAYSKVKGRPFQIREIVRKVEEYL"
     gene            complement(2675..3409)
                     /locus_tag="VD968_04350"
     CDS             complement(2675..3409)
                     /locus_tag="VD968_04350"
                     /inference="COORDINATES: protein motif:HMM:NF016408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HYE13655.1"
                     /translation="MFRPGRNPKEQTHADDTADHTPQTPAHGSYNASTPSSAQPAAGG
                     ATVTEAYQQSVHTPTTSRAVTESESLARDIKEGTLTGFVGNGTTLQGEASFKGMLRVD
                     GHLSGRVSSDDGTLIVSTNGRVDANVEVAVAQIYGTVNGDITATKRIEMGRVAKVTGN
                     IETPALVIEQGAIFEGSCRMSQLKEALDKQERAASAPSASSSSASANSSSSSSRASSA
                     PAKSASGDGAASGAAAGSPASSEVTT"
BASE COUNT          599 a         1198 c         1351 g          744 t
ORIGIN      
        1 gaacccgtac gtgttcatgt agtaggggaa gcgcgacgag cagccgatgc cggagacgaa
       61 gactatcttc tcgcgcggga tgcccagctc cggcatcacc ttctgcacgt tgttcagtat
      121 cgcgtagtcg ccgcagcccg ggcaccagcg cacctcctgg tcggaggcga agtccgcttt
      181 ggtgagcttg cccggaggcg gcgcgggcct ccccgcgacg accgacccgg gctcgctctc
      241 cggcgccggg ccgctgcccg acacgttgcc gcctatgcca cgcacgctcg tctcgttcgg
      301 cccctcgctc aaaatgtctt cacccttgtt cccgttgcct tgtgtgctca tctcttttcc
      361 tctgatccga tgcggccgca gtcggctatc tcgaattcaa gcttgtaagg attagtgccg
      421 ttgacgctga ccgagaccgc atgcttgacg gcgccgcgcc gccgaagacg aactgcccgc
      481 gcgccttcag actttaaact actctctaaa tcactagcgg gtgccacggc atcacaggta
      541 ctcctcgacc ttgcgcacga tctcccgaat ctggaagggg cggcccttga ccttcgagta
      601 ggcgacggcg tcaacgaggt acttggcgcg caccatcgtg cagagctggc cgaggttcat
      661 ctcggggatg atgaccgtct cgaagcggcg cagcacctcg cccaggttcg cggggaacgg
      721 gttgaggtgg cgcaggtgcg cggaggatac cggcttccct tcggcccgca gcttctcgac
      781 ggccgaggtt atcgagccgt aggtcgagcc ccagcccagg actaagacct tgccttcggg
      841 gtcgccgaaa acttccacgt cgggtatatc ctgcacggcg cggtcaacct tcgcctgccg
      901 catcatcacc atgaagtggt ggttctcggg gtcgtagttg acgttgcccg tcaggtgctg
      961 cttctcaatg ccgccgatgc ggtgctcgag ccccggagtg ccgggcagcg cgaaggggcg
     1021 cgcgagcgtc ccctcgtcgc gagcgtaggg catgaagccc tcggggttcg tgacgaagtt
     1081 aatctcgatc ttcggcagct cgttcaggtc gggcagcagc cacggctcgg cgccgttggc
     1141 gaggtagccg tccgagaggt agaagaccgg cgtcatgtac ttgaaggcga ggcgcacgga
     1201 ctcaatcgcc atcgtgaagc actcggccgg cgtcgctggc gcgagcacta tcgcggggca
     1261 ttcgccgttg cggccccaga cggcctggaa caagtccgcc tgctcggtct tcgtcggcag
     1321 gcccgtagag gggccgccgc gctgcacgtt gacgatgact aagggcagct ccgtcatcac
     1381 cgcgagcccg attgcctcct gcttcagggc gacgccgggg ccgcttgtgc cggtcaggcc
     1441 gacgtggccg gcgaaggcgg cgcctatggc ggcgcagacg gcggctatct cgtcctcggc
     1501 ctggaaggtc ttgacgccga agttcttgtg gcgcgaaagc tcgtggagga tgtcggaggc
     1561 cggcgttatc gggtacgagc cgtagaagag cgggcggccg gcaagctccg cggcggcgac
     1621 gaagccgatg gcggtcgcct cgttgcccgt gatcttgcgg tacttgcccg gcgcgatgac
     1681 ggccttgcga accttgtagt gcgtggtgaa gacctcggtc gtgtccgcga agttgtagcc
     1741 ggtcttcagc gccacctcgt tggccttctg gatttcgggc ttcttgccga acttatcctt
     1801 gatccattcg agcgtcggct ccatcggccg gtcgtagagc cagtagagga cgccgagcgc
     1861 gaagaagttc ttgcagcgat ccatctcctt gcgcgagagc tgcacgccgg cctcctgcaa
     1921 ggcgcgtatg ttcagcgacg tgatcggcag cttgtggacg cgatagccgc gcagggtctc
     1981 gtcctccagc gggctcgact ggtagttggc cttcttgagg ttctccttgt tgaactcgtc
     2041 ggagttgatg atgacggtgc cgccgtcctc gaggtcgggc aggttgacct tgagcgcggc
     2101 cgggttcatg gcgacgagca cgttgggctg gtcgccgggc gtgcgtatgt cgcgcgagga
     2161 gaagttgagc tggaagccgg agaccccggg cagcgagccc gcgggcgcgc gtatctcagc
     2221 ggggaagtcc ggcaaagtcg agatgtcgtt gccgacgacg gccgaagtgt tcgtgaactg
     2281 cgtgcccgtc aactgcatgc cgtcgccgga gtcgcccgcg aagcgtatgg tgacggtctc
     2341 tagctcttcg aggttacgct gtagctcttc tgccggcggc gtgtcaatga tggcgctcat
     2401 atgctttaac tcgttcctct gcgtctgggt ttaaaggggg gttgtccggc ctgcgggaag
     2461 caaagtcatc ggctctaacg gctgaagcgg cgtggaagaa acccagccca tgattcgaag
     2521 tcattctaca cagcgggcgc gcgtaaactc aagcgagggc gccggagacg cggaaagccc
     2581 ccgccgcccc gtgaagggcc gcgggggctt tcgcccttcg cgccgtacgc cgcccccgtg
     2641 cggaggcttg taagcgtggg tgggcgcgcg gacttcaggt cgtgacttcc gagctggcgg
     2701 gcgagcctgc ggcggcgccg ctggccgcgc cgtccccgga agctgacttg gccggggcag
     2761 aagaggcgcg tgacgaagac gacgaagagt tcgccgatgc cgaggacgag gaggccgaag
     2821 gcgccgaggc ggcgcgctcc tgcttgtcga gcgcctcctt gagctggctc atgcggcagc
     2881 tcccctcgaa tatcgcgccc tgctcgatga cgagcgcggg cgtctctatg ttgcccgtga
     2941 cctttgcgac gcgccccatc tcgatgcgct tcgtggcggt gatgtcgccg ttgacggtgc
     3001 cgtaaatctg cgcgaccgcc acctcgacgt tggcgtccac ccgcccgttg gtcgagacga
     3061 tgagcgtgcc gtcgtccgag gagacgcgtc ccgagaggtg gccgtcaacg cggagcatgc
     3121 ccttgaagct ggcctcgccc tggagggtcg tgccgttgcc gacgaagccg gtcagcgtcc
     3181 cctccttgat gtcgcgggcg agcgactcgc tctcggtgac ggcgcgtgag gtggtcgggg
     3241 tgtggacgga ctgctggtag gcttcggtga cggtcgcgcc gccggcggcg ggctgcgccg
     3301 acgacggcgt cgaagcgttg tagctgccgt gggcgggcgt ctgcggggtg tggtcggccg
     3361 tgtcgtcggc gtgggtctgt tccttcggat ttcttcccgg tctaaacatg tcgcattctc
     3421 cctgaaaggc ttggttggag cggccggcgg ggacgggtcg gccccgcgtc gggccaaaag
     3481 gggcgcgcgc cgcgcacctc aagtctgcat gaaggccgtt gagaatggag agtcgtcggt
     3541 gtttcgacac cgcccggccg cgcccgcggg cggcggccgt caaggagcgc ggccgatgat
     3601 aattcaaaag gcgtgggaag gcaaaagctg caaaacggag ttttcggttt ccagttttta
     3661 gttttcggct cccggtctta gctgaaaact ggaaaccgaa aactccttcc cccgatttac
     3721 gatccgcgcc cttttcattt accatgcgcg catcccaact tccgaaggag agtttcagag
     3781 atgaccggtc agatggtcga gttccagagt aacggcggca gcgcccgcgg gtatctgtcg
     3841 gcgccggagg gcgggagggg gccgggcgtc gtcgtgctcc aggagtggtg gg
//
LOCUS       DASPKR010000151         3650 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_18278, whole genome shotgun sequence.
ACCESSION   DASPKR010000151 DASPKR010000000
VERSION     DASPKR010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3650)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3650
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18278"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            880..1395
                     /locus_tag="VD968_04355"
     CDS             880..1395
                     /locus_tag="VD968_04355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13656.1"
                     /translation="MAQTYTCAYCRHEAAFPFAACPLCGREAAQATAGEVALVCYKCD
                     FETGAQIANCPVCGHPLVTPTRVRVLGVILMALGAFLVVFMGAITIFVAGVVAHSSDP
                     DATTRFDGGAKELALIYAVFGAVMAFGLGCLVAGLWQAWHGRRNPKLTKAVLAVAFVL
                     ALLASLVPALL"
     gene            1443..2342
                     /locus_tag="VD968_04360"
     CDS             1443..2342
                     /locus_tag="VD968_04360"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HYE13657.1"
                     /translation="MKRLTLTSLAVLLCAASCLAQASGNVAYSNEGRGQSRAEQNERN
                     KRAAADVASQTGMFIDASVLANVKADEHVAVFGVTAECAAVPECGQKVDAAVASFTRD
                     VRQLGVAPDDVFVDFVAQNKIYAYQIEGNIAREKLVGFELKKNVLVHYKDRLLLDKLV
                     VAASRSDIFDLIKVDYVVRDPAAVQSRLAEEAARVVREKAARYEKLLGKRMLPAQVYA
                     DKPSIYYPTEMYDSYTAQESEQINQDYYSNRERYTVQRARKSRTFFFNALTADNFDHV
                     INPVVTEPVVQFTLYLKVRYEMP"
     gene            2563..3198
                     /locus_tag="VD968_04365"
     CDS             2563..3198
                     /locus_tag="VD968_04365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13658.1"
                     /translation="MGQRIAATRREFLWSGALAGGALSLGAAAACSEPPGITVARPLL
                     VRTGEKTVAITHQPLEAPVLYFDKGLGRIYVAPEYRERAIKFMNASVTKEGVWAFAVG
                     GDPPAKEEAKEEEYREWDPTKDPKKGDVRIIERECVNVTFTFNCVPVLGSNPPVWWKC
                     NPLTYGQCVGTRVRLCWEVYKVVGMCTDYADKDCTRALGQSEAVDWFCLEE"
     gene            complement(3426..>3650)
                     /locus_tag="VD968_04370"
     CDS             complement(3426..>3650)
                     /locus_tag="VD968_04370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13659.1"
                     /translation="RGDREGLRRVHETVLKGKTRAQMIARNHSVNERKRAEKAEIAEW
                     FTVWLNQPEIFDDWLSLRRSSKDFREKFSE"
BASE COUNT          652 a         1135 c         1216 g          647 t
ORIGIN      
        1 tacgcgcagg acatgggcgg cccgaaatcc cgtgccacaa cgacggagct agtcccgctc
       61 tagcgcaagc agtcaaagcg cccgctgttg cgaataacgg gggatgaagc tatgaacttc
      121 gcccgaaggg tggtcgtaat cttctgagac cgtgcctgag ttgataattt cagtgaggct
      181 ttagatgtat tgccctaaat gtagccggca gcaagtctcc gaagacgttc gcttctgttc
      241 gcgttgcggt ctccaactcg acgccgtaag agggttgctc ggggaagacg caggcacccc
      301 ggcagcgggc gaagccgagc cccggctcac tcccgcgcgc aacagggaca tccttttagg
      361 ggcgacggtc atgctcgtcg gctccgtcgc agtcgcctta attatgatca gcaccgcggc
      421 tggaacgcct ttgcaggcgg tcattatccc gctactgatt ctatggctgg ggctcgccgc
      481 cgcgcttttg ctctcgggcc acgccgcgcg ggaagtgtcg aaactctttt caaaggaagc
      541 tcctgccccg cttcgggagt ctcttcgggc tcagtcacgc gggtcagcgc ctccgccggg
      601 gctttgccga ccgcccagag cacgcccgtg ccggggccgg gctcgtggcg ctccggcacg
      661 gcggagttgg cgcggccgtc gagcataacc gaacagacga ccgactctct ggatatgaaa
      721 aggggctcgt gagaagcgcc gtcggcgcgg gaccgggccg gcgcggcatc gagaatgtga
      781 agtctgaagc ggcggcgccg tccgaggagg cgccgccgcc gtttttgcgg agaattttta
      841 attgaccgag ggggcgggcg ccgataatat ccgcgctcga tggcacagac ttacacctgc
      901 gcatactgcc ggcacgaggc ggcgttcccc ttcgccgcat gccccctgtg cgggcgcgag
      961 gcggcgcagg caaccgcggg cgaggtcgcg ctcgtctgtt acaagtgtga cttcgagacg
     1021 ggggcgcaaa tcgctaactg ccccgtgtgc ggccacccgc tagtcacgcc gacgcgcgtg
     1081 cgcgtgctcg gggtgatcct tatggcgctg ggcgccttcc tcgtggtctt catgggggcg
     1141 ataactatct tcgtcgcggg cgtcgtggcg cactcctcag accccgatgc gaccacccgc
     1201 ttcgatggcg gcgcgaaaga gctggcgctc atctacgccg tcttcggcgc ggtcatggcc
     1261 ttcgggctgg gctgccttgt ggccggcctg tggcaggcgt ggcacggcag gcgcaacccg
     1321 aagctgacga aggcggtgct ggccgtggcg ttcgtgctcg cgctgctcgc gtcgctcgtg
     1381 ccggcgctcc tttgaactcc cgataaactt ccgaccgaaa aacgagagga gcttagacag
     1441 agatgaagag gctcacactt acttcactcg cggtattgct ctgcgcggcg tcgtgcctcg
     1501 cgcaggccag cggcaacgtc gcatactcga acgagggccg cgggcagtcg cgcgcagagc
     1561 agaacgagag gaacaagcgc gccgccgcgg acgtggcgtc gcagaccggc atgttcattg
     1621 acgccagcgt gctcgccaac gtcaaggcag acgagcacgt agccgtcttc ggcgtgacgg
     1681 ccgagtgcgc ggccgtcccc gagtgcgggc agaaggttga cgcggccgtc gcctcgttca
     1741 cgcgcgacgt caggcagctc ggcgtcgccc ccgacgacgt gttcgttgac ttcgtcgcgc
     1801 agaacaagat ttacgcgtac cagatagagg gcaacatcgc gcgggagaag ctcgtgggct
     1861 tcgagctgaa gaagaacgtg ctcgtccact acaaggacag gctgctgctc gacaagctgg
     1921 tggtcgcggc gtcgcgctcg gacatcttcg acctgatcaa agttgactac gtcgtgcgcg
     1981 acccggcggc cgtgcagagc aggctcgccg aggaggccgc ccgcgtcgtg cgcgagaagg
     2041 ccgcccgcta cgagaagctt ctggggaaga ggatgctgcc cgcgcaggtc tatgccgaca
     2101 agccgagcat ctactacccg accgagatgt acgactccta cacggcgcag gagtcggagc
     2161 agataaacca ggactactac agcaaccgcg agcgctacac cgttcagcgc gcgcgaaaga
     2221 gccgcacctt cttcttcaac gcgctgacgg ccgacaactt cgaccacgtg ataaaccccg
     2281 tcgtcacgga gcccgtcgtg cagttcacgc tctacctcaa ggtcaggtac gagatgccct
     2341 gagcagccgc ccgcccgcgc gcggctcccg ggcgaggccg cgcgcgggct cccgccactc
     2401 gcttcttcaa ggctattgac acgggagcgc agacgagaat atcttgcgtg cgctttcgca
     2461 gccccctcgc gctctcactc ccctcgattg aagctcgcct cgcgtcatcc atatctcacc
     2521 tcgacccgcc agtaaaactt taggaaggag ggctcgcggg taatgggcca aagaatagcc
     2581 gctacgcgta gggaattttt gtggtcgggg gctctggccg ggggcgccct gtcgctgggc
     2641 gccgcggccg cgtgctccga gccgccgggg attacggtgg cgcggccgct actcgtgagg
     2701 acgggcgaga agacggtggc gatcacacac cagccgttag aggcgcccgt cctgtacttc
     2761 gacaaggggc tcggcagaat ctacgtcgcg cccgagtacc gcgagagggc gataaagttc
     2821 atgaacgcct cggtgacgaa ggaaggcgtg tgggccttcg ccgtcggcgg ggacccgccc
     2881 gcgaaggagg aggccaagga ggaagagtat cgggagtggg acccgaccaa agacccgaag
     2941 aagggggacg tgaggatcat cgagcgcgag tgcgtgaacg tgaccttcac ctttaactgc
     3001 gtccctgttc tcggctccaa cccgcccgtc tggtggaagt gcaacccgct cacctacggc
     3061 caatgcgtgg gtacccgcgt caggctctgc tgggaggtct ataaagtggt cggcatgtgc
     3121 accgattacg ctgacaaaga ctgcacgcga gcactcggac agtcggaggc ggtggactgg
     3181 ttctgcctcg aagagtgaaa gtggggggcg agactttact cctctatgag cgagtgcttg
     3241 aagaggcgct ggcacgcgac ggcagggcgc aggccccctt cgtgcgcggc cgcggcggcc
     3301 acctcggggc gcggaagaat tagccacaga ggcatggggg aggtagaaag cagttaagag
     3361 acggtcgagc ggtttgactg ccttctgcct tcttctccgt gcatcctcgc ctgtgtggct
     3421 aattgttatt cggagaattt ttcccggaag tctttggagc tgcggcgcag cgagagccag
     3481 tcgtcaaaga tttcgggctg gttgagccag acggtgaacc actcggctat ctcggccttc
     3541 tcggcgcgct tgcgctcgtt gactgaatgg ttgcgggcga tcatctgcgc gcgcgtcttg
     3601 cccttcaaga ccgtctcgtg gacgcgtctg aggccctcgc ggtctcccct
//
LOCUS       DASPKR010000152         6455 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_148235, whole genome shotgun sequence.
ACCESSION   DASPKR010000152 DASPKR010000000
VERSION     DASPKR010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6455)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6455
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148235"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..188
                     /locus_tag="VD968_04375"
     CDS             <1..188
                     /locus_tag="VD968_04375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13660.1"
                     /translation="NQWFDEAQFESYRRLGQICAKAAFGKLKSVEKLKRSTRLSPALI
                     EEMFAEVNLKFNACHQA"
     gene            253..732
                     /locus_tag="VD968_04380"
     CDS             253..732
                     /locus_tag="VD968_04380"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF012413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0005542 - folic acid binding [Evidence
                     IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HYE13661.1"
                     /translation="MAIIGIVAVDRAGAIGKGGSLPWRYPADMKFFRERTTGHAVLMG
                     HKTWLTLKAPLKGRLNIVLTRRAEPEPRESVVWLRDSESALALARYLKCDLFVIGGAQ
                     IFEAFARAIDRWLVTEIPETVEGADTFMPPGFLTGFEPYDSRVLEPELKVTFYRRSG"
     gene            complement(724..1932)
                     /locus_tag="VD968_04385"
     CDS             complement(724..1932)
                     /locus_tag="VD968_04385"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYE13662.1"
                     /translation="MPIIAQLAWLVFYCWLAAGALTLLALLRLRPLKPTGAPAGPGRS
                     PFVSILVPARNEERRVLAGSVRSMLAQDYGRFEVVAVNDRSTDATGLILRSLAAEDAR
                     LHVIEGGEPPEGWLGKPNALRQALAASQGEWVLATDADMIFHPAALRTAVGRALSLGL
                     DAFTIFPDFQAHTFWERVFIPIWGWSMLVLFPLDLVNHPKVPLAAGIGGFFLMRREAL
                     ERIGGFGAVRDEVLDDFRLAAALKRSGAPIRAEPAPALAWTRMYSGFRGLWESATKNW
                     FSAVGFSPALGALTLLWTLAVGVLPPLAGLACAALVLAGVGGEPARQLLVPTLGVWAV
                     QAAIVGVMNRRAGVPAVYGLTAPLGFALTCAVLSYSAFGVLSGRGLEWRGRRFYERGG
                     VRPPRGGRSA"
     gene            complement(1938..3296)
                     /locus_tag="VD968_04390"
     CDS             complement(1938..3296)
                     /locus_tag="VD968_04390"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HYE13663.1"
                     /translation="MNFYENVLGLIGRTPLIKLNRLTEGIKATVLAKMESLNPGYSVK
                     DRIGVSMIAAAEREGVLKPGGTIIEATSGNTGIGLALAAAVKGYRCIFVMTDKASVEK
                     VRYLKALGADVVVVPVSAKPGTPDHYVETARRIARETPNSFYPDQYSNPNNPEAHYRT
                     TGPELWEQTEGRITHFVSGLGTGGTISGTGRYLKEKNPGIRVVGADPYGSVFKTYKET
                     GRTHEVTPYLVEGIGQEIVPANVHIKYVDEIINVTDRDSFELSRQLGRKEGIFCGGST
                     GTNLAAALKVAKDLDETGVVVFIVCDTGEHYLTKHHSDEWLREKRLLEPKRMTAGLIN
                     STKGEPAVPRMVSASPQDTVAGALARMGEHGFTQMPVIEDGRAVGALRESRLLAKVLG
                     KRELLQSPVSEVMEESFPVVDVDATSQEVTRLLRRSPAVLVEEFGRITGIITRHDMLD
                     VQ"
     gene            complement(3362..3490)
                     /locus_tag="VD968_04395"
     CDS             complement(3362..3490)
                     /locus_tag="VD968_04395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13664.1"
                     /translation="MPAREKVREQVRRARRVPGLGRYVTILALAALISLMLCRPEG"
     gene            3741..4175
                     /locus_tag="VD968_04400"
     CDS             3741..4175
                     /locus_tag="VD968_04400"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE13665.1"
                     /translation="MPEEFPHDMRPGRARRNGHAHGPRTILLAEDDPDVRLMFKMVLE
                     ARGYRVVEAADGPETVRIAEGEHPDLIMMDLQLPRLNGFAVARFVRQHDRLKGVPIVV
                     VSGHDPAKHRQLAMAAGCNAYLHKPVDFEQLEELLASLLPSR"
     gene            complement(4179..5201)
                     /locus_tag="VD968_04405"
     CDS             complement(4179..5201)
                     /locus_tag="VD968_04405"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HYE13666.1"
                     /translation="MAKAKEIEGLDCGAEAGAGARLILSARFEEMRGYRAAALDWSDI
                     EGVHDMRVASRRLRSAVRDFAPYMRRGGKRLDEARESLKRLADALGEVRDLDVEIAEL
                     EKLAAEAPDEEAAEGARLILAEREERRGLARARLTPEITEEALEDARRLLARALDPPR
                     RRGKKKNGDDGERGESLAEAGDRIVLRLWDELRALSASLYRPLKTKPLHRMRIAAKRL
                     RYAMELFAACRGRTLKKLASEVADLQKALGDLHDCDVWVEEFGGFLAEGSEDGGAHSA
                     MRRRAALWLLEHFAEARTRHYRDALGIWRGWERDRFGARLAEALKGEGVDEEGADAQP
                     AVAAGQ"
     gene            complement(5205..6125)
                     /locus_tag="VD968_04410"
     CDS             complement(5205..6125)
                     /locus_tag="VD968_04410"
                     /inference="COORDINATES: protein motif:HMM:NF014587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HYE13667.1"
                     /translation="MKLAAIDIGSNSIKLVVAEAAAGGDSFAVLAREKEVVRLGHETL
                     TRGLLSPGAIARAAETVGRFRAVAEARGSESVTAIATASMRAARNAADFVAEVERRTG
                     VRVEVLSGEEEARLIGVASAHGCSGGLPLVNVDIGGGSTEVSLMRGGEARELSSVPLG
                     AVGLTEKFIESDPPRRKELEALRDEVRSAFEPPAREMRGARWVRATGTSGTIIALGDV
                     LRRRREAAGGEIPLWPLARLNKKLAGMTLAERRAVPGISAQRAEIVVAGGQILEGAMC
                     ALGINMLRTCDFALREGVVIDRLRRRGADV"
     gene            complement(6139..>6455)
                     /locus_tag="VD968_04415"
     CDS             complement(6139..>6455)
                     /locus_tag="VD968_04415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13668.1"
                     /translation="VRDIYGIALVPDLVLYLRAGRAEVLVSRVLESGRKFDYWESGMD
                     LNLGEDFYDSFVEYQTRLLREFDRMSGEYGFRTVDASRTIRRVAADLRRAVARVIDGG
                     EE"
BASE COUNT          987 a         2316 c         2151 g         1001 t
ORIGIN      
        1 ccaaccagtg gttcgacgag gcgcagttcg agagctaccg ccggctcggg cagatatgcg
       61 cgaaggccgc cttcggcaag ctgaagtcgg tcgagaagct aaagcgctca acgcgcctct
      121 cgcccgcgct catcgaggag atgttcgccg aagtcaacct caagttcaac gcgtgccacc
      181 aggcctgagc gccgcacgcg cgcctcggcg tgatagactg tcggccgctc ggaggaggcg
      241 cgcggcggga ggatggcgat tataggcatc gtggcggttg accgcgccgg ggccatcggc
      301 aagggcggca gtttgccctg gcgctacccc gccgacatga agttcttcag ggagcggacg
      361 acgggccacg ccgtcctgat gggccacaag acctggctaa cgctcaaggc gcctttaaag
      421 gggcggctga acatcgtgct tacgaggcgc gccgagccgg agccgcgaga gtctgtcgtg
      481 tggctgcgcg actcggagtc ggctctggcg ctagccagat atctcaagtg cgacctcttc
      541 gtcatcggcg gcgcgcaaat cttcgaggcg ttcgcgcgcg cgattgaccg ctggctcgtc
      601 accgaaatcc cagagacggt cgagggcgca gacaccttca tgccgcccgg cttcctcacg
      661 ggcttcgagc cttacgactc gcgagtgctt gagcccgagc ttaaagtcac cttctaccgc
      721 cgctcaggct gagcggccgc cgcgcggcgg cctgaccccg ccccgctcgt agaacctccg
      781 ccccctccac tccaagcccc gcccgctcag cacgccgaag gccgagtagg agagcacggc
      841 gcaggtcagc gcgaacccca gcggcgccgt caggccatac acggcgggga cgcccgccct
      901 cctgttcatg accccgacta ttgcggcctg aacggcccag accccgagcg tcggcacgag
      961 cagttgccgc gccggctcgc cgcccacccc cgcgagcacc agcgcggcgc acgccaggcc
     1021 cgcgagcggc gggagcacgc ccacggcgag cgtccagagg agcgtcaagg ccccgagcgc
     1081 gggcgagaag ccgacggccg agaaccagtt cttagtggca ctctcccaga ggccgcggaa
     1141 gcccgagtac atgcgcgtcc acgcgagcgc gggcgcgggc tctgcgcgta tgggcgcgcc
     1201 cgagcgtttg agggccgcgg cgaggcggaa gtcgtccaac acttcgtcgc gcacggcgcc
     1261 gaagccgcct atgcgctcga gcgcctcacg acgcatgagg aagaagccgc cgatgccggc
     1321 cgcgagcgga accttcgggt ggttgacaag gtcgagcggg aagagcacga gcatgctcca
     1381 gccccagatg gggatgaaga cgcgctccca gaacgtgtgc gcctggaagt cggggaagat
     1441 ggtgaaggcg tcgagcccga gcgagagggc gcggcccacc gccgtgcgca gcgccgcggg
     1501 gtggaagatc atgtcggcgt cggtcgcgag cacccactcg ccctgcgagg ccgcgagcgc
     1561 ctgccgcaaa gcgttgggct tgccgagcca cccctcgggc ggctccccgc cttcgatgac
     1621 atgcagcctc gcgtcctcag ccgccagtga gcgcagtatc aggccggtgg cgtcggtcga
     1681 gcggtcgttc acggccacca cctcgaaccg gccgtagtcc tgcgcgagca tcgagcgcac
     1741 ggagcccgcc agcacgcgcc gctcctcgtt gcgcgccggg acgagtatgg agacgaaagg
     1801 cgaccggccc ggccccgcgg gcgcgcccgt gggcttcagc ggccgcagcc gcaacaaggc
     1861 gaggagcgtc agcgcgccgg ccgccagcca gcagtagaag acgagccagg caagttgggc
     1921 gatgatgggc aacttctcta ctgcacgtct agcatgtcgt ggcgggtgat gatgccggtg
     1981 atgcggccga actcttcgac gaggacggcg gggctgcggc gcagcaggcg cgtgacctcc
     2041 tgcgaggtgg cgtcaacgtc aacgacgggg aagctctcct ccatcacctc gctgacgggc
     2101 gactgtagca gctcgcgctt gccgagcacc ttcgcgagca ggcggctctc gcgcagcgcg
     2161 ccgacggcgc ggccgtcctc gatgacgggc atctgcgtga agccgtgctc gcccatgcgc
     2221 gccagcgcgc cggccacggt gtcctgcggc gaggccgaga ccatgcgcgg cacggccggc
     2281 tcgcccttcg tcgagttgat gagccccgcc gtcatgcgct tcggctcgag cagccgcttc
     2341 tccctcagcc actcgtcgga gtggtgcttg gtcaggtagt gctcgcccgt gtcgcagact
     2401 atgaagacga cgacgcccgt ctcgtccaag tctttcgcta ccttgagcgc cgccgcgagg
     2461 ttcgtcccag tcgagccgcc gcagaagatg ccctccttgc gcccgagctg gcgcgatagc
     2521 tcgaacgagt cgcggtcggt gacgttgatt atctcgtcca cgtacttgat gtggacgttc
     2581 gccggcacta tctcttgccc gatgccttcg accaggtagg gcgtgacctc gtgcgtgcgc
     2641 cccgtctcct tataggtctt gaagaccgag ccgtaggggt ctgcgcctac gacccggatt
     2701 cccgggttct tctccttcag gtatcggccc gtccccgaaa tggtgccgcc cgtcccgagc
     2761 cccgagacga agtgcgtgat gcgcccctcg gtctgctccc agagctccgg ccccgtggtg
     2821 cggtagtgcg cctcggggtt gttggggttc gagtactggt cggggtagaa gctgttcggc
     2881 gtctcgcgcg cgatgcggcg ggcggtctcg acgtagtggt cgggcgtgcc gggcttggcc
     2941 gagacgggga cgacgacaac gtcggcgccg agcgccttca agtacctgac cttctcgacc
     3001 gaggccttgt cggtcatgac gaagatgcag cggtagccct tgacggccgc ggctagcgct
     3061 agcccgatgc ctgtgttgcc ggacgtcgcc tcgatgatgg tgccgccggg cttgagcacg
     3121 ccttcgcgct cggcggccgc gatcatcgag acgccgatgc ggtctttgac ggagtagccg
     3181 gggttcaggc tctccatctt cgcaaggacg gtggccttta tcccttcggt caggcggttg
     3241 agtttgatta ggggggttcg gccgatgagg ccgaggacgt tttcgtagaa gttcatatca
     3301 tctccgggtt acaggccgga gtttacaacg gaaatcagcg gcgctgccag ccgggcctgg
     3361 ctcagccctc cgggcggcag agcatgagag atatgagcgc ggcgagcgca agaatcgtga
     3421 cgtagcgccc gaggcccggc acgcggcgcg cgcgcctcac ctgctcccga actttttcgc
     3481 gtgcgggcat tgttgtgggc cgcgcccgcg cagtctgttc gcttccgccc actgacgcgc
     3541 gacggggccg aatttcaccg cccgattgta agttcgcgta cagacccgcc cggcgcgcgc
     3601 agatatactc cgcgccacgt tcgcggatcg ggaaaggcgg gggcggcgct gccacgagcg
     3661 ccgcccccga cacacaaagg cccgcagccc acacacgcca ccgcgcccgt taggaaagga
     3721 cgtgcgactt gatccctcgt atgccagaag agtttcctca cgacatgcgc cccggccgcg
     3781 cgaggcgcaa cggccacgct cacgggccgc gcacgatact cctcgccgag gacgacccgg
     3841 acgttcggct gatgtttaag atggtgctcg aggctcgcgg ctaccgcgta gtcgaggcgg
     3901 ccgacgggcc ggagaccgtc cgcatagccg agggcgagca ccccgacctg ataatgatgg
     3961 acttgcagct cccgcgcctt aacggcttcg ccgtcgcgcg cttcgtccgc cagcacgacc
     4021 gcctcaaggg cgtccccatc gtcgtcgtct cgggccacga cccggccaag caccgccagc
     4081 tcgcgatggc cgccggctgc aacgcctacc tgcataaacc agttgacttc gagcagctcg
     4141 aagagctgct cgcgagcctc ctgccctcgc gctgatcctc actgccccgc cgcgacggcc
     4201 ggttgcgcgt cagcgccctc ttcgtcaacg ccttcgccct ttaacgcctc tgccagccgc
     4261 gccccgaacc ggtcgcgctc ccagccccgc cagatcccga gcgcgtcgcg gtagtgccgg
     4321 gtgcgcgcct cggcgaagtg ttcgagcagc cagagggccg cgcgcctgcg catggcggaa
     4381 tgggcgccgc cgtcttccga gccttcggcg aggaagccgc cgaactcctc gacccaaacg
     4441 tcgcagtcgt gcaggtcgcc cagcgccttc tgcaagtcgg ccacctcgga ggcgagcttc
     4501 ttaagcgtcc gcccgcggca ggccgcgaat agctccatcg cgtagcgcag ccgctttgcc
     4561 gcgatgcgca tcctgtgaag cggcttcgtc ttgagcggcc tgtagaggct cgcgctcagc
     4621 gcgcgcagct cgtcccaaag ccgcagcact atgcggtcgc ccgcctcggc cagactctct
     4681 ccgcgctcgc cgtcgtcgcc gttcttcttc ttcccgcgcc tgcgcggggg gtcgagcgcg
     4741 cgcgccagaa gccgccgggc gtcttcgagc gcctcttccg ttatctcggg cgtgagccgc
     4801 gcgcgggcga gaccgcggcg ctcctcgcgc tcggccagaa tcaggcgcgc gccctcggcc
     4861 gcctcctcgt cgggcgcctc ggcggcgagc ttctcgagct ccgcgatctc aacgtccagg
     4921 tcgcgcacct cgccgagcgc gtcggcaagg cgtttgagag actcgcgcgc ctcgtctagt
     4981 cgcttgccgc cgcgccgcat gtagggcgcg aagtcgcgca cggcgctgcg cagcctgcgc
     5041 gacgcgacgc gcatgtcgtg gacgccctcg atgtcagacc agtcgagcgc cgccgccctg
     5101 tagccgcgca tctcctcgaa gcgcgccgaa agaatcagcc gcgcgccggc gccggcctcc
     5161 gccccgcagt cgagcccctc aatctctttc gctttcgcca ttttctaaac gtcggcccct
     5221 cgtcggcgta gtcggtctat gacgaccccc tcgcgcaaag cgaagtcgca cgtgcggagc
     5281 atgtttatcc cgagcgcgca catcgcgcct tcgagaatct gcccgcccgc tacgactatc
     5341 tcggcgcgct gcgcgcttat gccggggacg gcgcgccgct cggccagggt catgccggcg
     5401 agctttttgt tcaggcgcgc gagcggccag agcggaatct cgccgcccgc agcctcgcgc
     5461 cttcgccgca gcacgtcgcc gagcgcgatg atggttcccg aagtccccgt cgcgcgcacc
     5521 cagcgcgccc ccctcatctc gcgcgcgggc ggctcgaagg ccgagcgcac ctcatcgcgc
     5581 agcgcttcca gctccttccg cctcggaggg tcggactcga tgaacttctc ggtcagcccc
     5641 acggcgccga gaggcactga agacaactca cgcgcctcgc cgccgcgcat aagagagact
     5701 tcggtcgagc cgccgcctat gtcaacgttg acgagcggca ggccgcccga gcagccgtgc
     5761 gcggaggcga cccctatgag cctcgcctcc tcctcgccgg agagcacctc gacgcggacg
     5821 cctgtgcggc gctcgacctc cgcgacgaaa tcggcggcgt tccgcgcagc gcgcatcgag
     5881 gcggtcgcga ttgccgtgac gctctcggag ccgcgcgctt cggcgaccgc gcggaagcgc
     5941 ccgacggtct cggccgcgcg ggctattgcg cccggcgaga gcaggccccg cgtgagcgtc
     6001 tcgtggccta gcctgacgac ctccttctcg cgcgcgagca cggcgaacga gtcgcccccg
     6061 gctgccgcct cggccacgac gagctttatc gagttcgagc cgatgtctat ggccgcgagc
     6121 ttcatgagag gcaggccgct actcttcccc gccgtctatg acgcgggcga cggcgcggcg
     6181 caggtctgcg gcgacgcggc gtatcgtgcg cgaggcgtca acggttcgga agccgtactc
     6241 gccgctcatc cggtcgaact cgcggagcag gcgcgtctgg tactcgacga agctgtcgta
     6301 gaagtcctcg ccgaggttca agtccatgcc cgactcccag tagtcgaact tccgccccga
     6361 ctccaacacg cgcgagacga gcacttcggc gcggcccgcg cgcaggtaca agaccagatc
     6421 gggcacgagc gcgatgccgt agatgtcccg caccc
//
LOCUS       DASPKR010000153         2905 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_148316, whole genome shotgun sequence.
ACCESSION   DASPKR010000153 DASPKR010000000
VERSION     DASPKR010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2905)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2905
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148316"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..984
                     /locus_tag="VD968_04420"
     CDS             <1..984
                     /locus_tag="VD968_04420"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE13669.1"
                     /translation="SAKMQAVYQMIETVAAVQSTVLITGESGTGKEMVARAIHNLSPR
                     SDKPFMPINCGAFTETLLESELFGYVRGAFTGATANRKGLFEAADRGTIFLDEIGEMS
                     PTMQVKLLRVLQERKVRPVGAHEETAVDTRVIAATNRDLAAMVKQGSFREDLFYRVSV
                     IPIELPPLRERREDIPDLVEHFVQKFCEQTGRSLGVSERATELLERYSWPGNVRELEH
                     TIERAVALERTDRIQPESLPQAVTNYNPSSVAPSAFELPEQGLNLVAHLDHLEKTYLL
                     EALRRTGGNQTRAAEVLHMSVRSLRHLLDKHGIRSITAQLRSDAASSRGGE"
     gene            1429..1890
                     /locus_tag="VD968_04425"
     CDS             1429..1890
                     /locus_tag="VD968_04425"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HYE13670.1"
                     /translation="MHTKKGQQGFSLVELLIVVAIIGIIAAIAIPNLLASRRAANEAS
                     AISTVRTIGTAQTTYASTYGNGVYATMQQLYDQKFIDGAVLNATPTAPKSGYSFAITN
                     PTGAGFVTGAAPANGNVGGRQFSSDESGIIYAAPQSGSTPPTTTSGSPIGN"
     gene            2034..2498
                     /locus_tag="VD968_04430"
     CDS             2034..2498
                     /locus_tag="VD968_04430"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HYE13671.1"
                     /translation="MQHPKDGQRGFSLVELLIVVAVIGILAAVSIPNLLASRRAANEA
                     SAIQTMRTLSSAEGTYASTYGNGVYGTMQQLSDLKLIDSAIRNATAMVPKSGYSFAIT
                     NPTGSGYVSAAAPALGTMGSRQFSSDESGIIYAAPQSGSTPPTTTSGTPIGN"
     gene            2552..>2905
                     /locus_tag="VD968_04435"
     CDS             2552..>2905
                     /locus_tag="VD968_04435"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HYE13672.1"
                     /translation="MKTRLRKLLEEPLLLLAAPCPLAVRYPSRPMNSLRTCVFPCAGF
                     GTRFFPATKVIPKEMLPLVDKPILQYGIEEARDSGFDKLIIVTSKGKETILDHFDRTA
                     ELERSLRERGKNDLLA"
BASE COUNT          554 a         1063 c          858 g          430 t
ORIGIN      
        1 tcggccaaga tgcaggccgt ctatcagatg atcgagacgg tggccgccgt gcagtcaact
       61 gtgctcatca ctggcgagtc cggcaccggc aaggagatgg tcgcgcgcgc catacacaac
      121 ctctccccgc gctccgacaa gcccttcatg cccatcaact gcggcgcgtt caccgagacg
      181 cttttagagt ctgagctttt cggctacgtc cgcggcgcct tcacgggcgc gacggcgaac
      241 cgcaaggggc tcttcgaggc cgccgaccgc ggcacgatct tcctagacga gataggcgag
      301 atgtcgccca ccatgcaggt caagctgctg cgcgtccttc aggagcgcaa ggtgcgtccc
      361 gtcggcgcgc acgaggagac ggccgttgac acgcgcgtca tagccgcgac gaaccgcgac
      421 ctagcggcga tggtcaagca gggcagcttc cgcgaagacc tcttctaccg cgtctccgtc
      481 atccccatcg agctcccgcc actgcgggag cgccgcgagg acatacccga cctcgtcgag
      541 cacttcgtgc aaaaattctg cgagcagacg ggccgctcgc tcggcgtctc ggagcgcgcg
      601 acagagcttc tggagcgcta ctcctggccc ggcaacgtgc gagagctcga gcacaccatc
      661 gagcgcgccg tcgcgctcga gcgcaccgac cgcatacagc ccgagtccct gcctcaggcc
      721 gtgacgaact acaacccttc gagcgtggcg ccctcggcct tcgagctgcc cgagcagggc
      781 ctcaacctcg tcgcgcacct agaccacctg gagaagacct acctgctcga agccctgcgc
      841 cgcacaggcg gcaaccagac gcgcgccgcc gaggtgctcc acatgagcgt ccgaagcctg
      901 cgccacctcc tcgacaagca cggcatacgc agcatcaccg cccagctacg ctccgacgcg
      961 gcctcctccc gcggcggcga gtagctggag acccgctcgg caactctctc gtagcgcccg
     1021 cggcgtggga ctgggcgccg cgccgggagc gcttctgcga ttcagaattc cgggaacgcc
     1081 tcacgccatt tccgggaacc gcccgcacac ttccccttta aatcacgtca cttacggcag
     1141 ttcggcaggt tgtcactttt cgtcacgggc gcctgccgaa aattgttagg agggtaaata
     1201 ttgcgcgccg ggcgcggaga gggggcgcgc tgaagtttgc cgctaaatcc ggccaaaagc
     1261 gagggtgacg agggcgcggc gggcgccgcc agcctaagtg gcacgcccct tgtaactgac
     1321 ctcggcgacc gaaccgcgcg ttagcggcgc gtagcctgag acgagggccg acaacgcgag
     1381 aaatcttcag cagagtaaac cccatctctt aaggagcacc agaagaagat gcacacgaaa
     1441 aaaggccagc agggcttctc gctcgtcgag ttgctgatcg tcgtcgcgat catcggcatc
     1501 atcgccgcca tcgccatccc gaacctcctc gcctcccgcc gcgcggccaa cgaggcctcg
     1561 gccatctcca ccgtccgcac catcggcacc gcgcagacga cctacgcctc gacctacggc
     1621 aacggcgtct atgccacgat gcagcagctc tacgaccaga agttcataga cggcgcggtg
     1681 cttaacgcca cgccgacggc cccgaagagc ggctacagct tcgccatcac caacccgacg
     1741 ggcgccggct tcgtcacggg cgcggccccg gccaacggca acgtgggcgg ccgccagttc
     1801 tcctccgacg agagcggcat catctacgcc gccccccagt cgggcagcac gccgccgacg
     1861 accacctccg gctcgcccat cggcaactaa cacgcgggcg actcggcaag cagagcgaag
     1921 ggggacgggg tcagaccgac gccgccccct tttgctttag cgccccggca cgcagtttgt
     1981 taatcggtgc ggcggacgct ccgcgggccg cggcggaaag gctctcgaac aacatgcagc
     2041 acccgaaaga cgggcagcgg ggcttctcgc tagtcgagct tttaatcgta gtcgcggtga
     2101 tagggatact cgccgccgtc tcgatcccga acctcctcgc ctcccggcgc gcggccaacg
     2161 aggcctcggc catacagacc atgcgcacgc tctcgagcgc cgaaggcaca tacgcctcga
     2221 cctacggcaa tggcgtttac ggcacgatgc agcagctctc agacctgaag ctcattgaca
     2281 gcgccatcag gaacgctacc gccatggtcc cgaagagcgg ctacagcttc gccataacga
     2341 acccaacggg ctccggctac gtgagcgccg ccgcgcccgc gctaggcacg atgggaagcc
     2401 gccagttctc ttccgacgag agcggcatca tctacgccgc cccgcagtcc ggcagcacgc
     2461 cgcccacaac gacatcgggg acgcccatcg ggaactgaaa cttccggcga cggccacggc
     2521 gccgcgcccc tcgccccccg aaacgcgccg catgaagacg cgcctcagaa aacttctcga
     2581 agagccgctc ctgctcctcg ccgcgccctg ccctcttgct gtgcgatatc cttcgcgccc
     2641 gatgaacagc ctccgcacgt gcgttttccc ctgcgcggga ttcgggaccc gctttttccc
     2701 ggccacgaag gtcatcccga aggagatgct cccgctcgtc gacaagccca tcctgcagta
     2761 tggcatcgag gaggctcgcg actccggatt cgacaagctc atcatcgtca cctccaaagg
     2821 gaaggagacg atcctcgacc acttcgatcg cacggccgag ctcgagcgat cgctgcgcga
     2881 gcgcgggaag aacgacctgc tcgcg
//
LOCUS       DASPKR010000154         7639 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_536728, whole genome shotgun sequence.
ACCESSION   DASPKR010000154 DASPKR010000000
VERSION     DASPKR010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7639)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7639
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_536728"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /locus_tag="VD968_04440"
     CDS             <1..257
                     /locus_tag="VD968_04440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13673.1"
                     /translation="TVVWKAKFDAAPYLTLHRFGVSAGKQVELMVSLPLVEGVGADAW
                     LARAVEQFNATCESLKIDGKNKFGTRLKPDKITAALKAKR"
     gene            262..1137
                     /locus_tag="VD968_04445"
     CDS             262..1137
                     /locus_tag="VD968_04445"
                     /EC_number="2.4.2.28"
                     /inference="COORDINATES: protein motif:HMM:NF005657.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioadenosine phosphorylase"
                     /protein_id="HYE13674.1"
                     /translation="MTKAAIGIIGGSGLYQMPELKEVEEVSVGTPFGPPSDAFIVGTL
                     EGVRVAFLPRHGRGHRLLPTELPFRANIYAMKKLGVERILSASAVGSLQERYAPLDMV
                     IPDQFFDRTRARARESTFFGDGIVAHITFAHPVCPQVGDVLEESCRVAEVRAHRGGTY
                     LCMEGPAFSTKAESNVYRSWGMDVIGMTNLQEAKLAREAEICYSTLALVTDYDCWHEE
                     HDAVSVETVVEYLNKNVRNAQIIMREAVRRLASTARDCECGSALKSAIFTPQELWPEP
                     TTERLAEIIKKYRKQ"
     gene            1151..1627
                     /gene="bamD"
                     /locus_tag="VD968_04450"
     CDS             1151..1627
                     /gene="bamD"
                     /locus_tag="VD968_04450"
                     /inference="COORDINATES: protein motif:HMM:NF024915.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HYE13675.1"
                     /translation="MRKFILLGGAALALSLSAQAMRAQSGTVAKGPDPETVKDLEAEK
                     SAMHELGVARHYFKMKKAYVAAFKRTEELIAGYPEFSRLDEALYIAGMSSLYLSEGKG
                     KQAVPKAPAERAAEFTPEALRSNARAYLARLVKEFPESKFRKDADEALAQLGPEKQ"
     gene            1726..2670
                     /locus_tag="VD968_04455"
     CDS             1726..2670
                     /locus_tag="VD968_04455"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HYE13676.1"
                     /translation="MSLLVVGSVAFDAVETPFGSREKMLGGSATHFSLSASFFTDVRV
                     VGVVGEDFGGEEMRVFEERGINTDDLERVAGETFFWRGRYDFDLNTAHTLDTRLNVFA
                     DFRPKLSEASQRSRMVFLGNIQPELQRGVRREVRGAELVALDTMNYWITSVPEQVEAA
                     IREVDVVIINDAEARQLSKEPNLIKAARRILSWGPRALVIKRGEYGAAMFTDGAYFAI
                     PAYPLESVFDPTGAGDTFAGGFMGYLASSGTVDEAAMRRAIIFGSVMASFNVEEFGTE
                     RVQRLTHREINERFSAFKRMTHFEEIPFERPAAAATEK"
     gene            2773..3168
                     /locus_tag="VD968_04460"
     CDS             2773..3168
                     /locus_tag="VD968_04460"
                     /inference="COORDINATES: protein motif:HMM:NF020967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HYE13677.1"
                     /translation="MFCPVCESEYREGITRCPDDGAELVARLTPENSPHDHSEARYVP
                     LHNIGSPAEAEMVNDILTQNGIRSAVQSGGMDAFAPLLSTSSPGALVLVDERDFDRAQ
                     EIYNSFFGSDTTPLTGATDEEEKGGEDDD"
     gene            3202..3588
                     /gene="cutA"
                     /locus_tag="VD968_04465"
     CDS             3202..3588
                     /gene="cutA"
                     /locus_tag="VD968_04465"
                     /inference="COORDINATES: protein motif:HMM:NF015077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HYE13678.1"
                     /translation="MAEAGSAAIVVMMTAGSEEEASRLAEMLVGAHLAACVQIMQKME
                     SVYRWKGEVHRAPEFLLLVKTTAACFDELEREVRALHTYDTPEIIALPATHVSAPYHE
                     WLTSNAFPPLVSRLAGGDDGPDGQDS"
     gene            complement(3585..4331)
                     /locus_tag="VD968_04470"
     CDS             complement(3585..4331)
                     /locus_tag="VD968_04470"
                     /inference="COORDINATES: protein motif:HMM:TIGR00730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HYE13679.1"
                     /translation="MSENDQAGIEAQGARHTTQDEQLLETPRADEFTHTDTWRVFRIM
                     GEFVEGFDELATVDRGVAIFGSARTPADSPFYAAAQETAALLVEAGFAVITGGGPGIM
                     EASNRGALDAGGVSIGCNIELPFEQQPNPYQTRSLTFKYFFVRKTMFVKYSTAFIIFP
                     GGFGTLDELFEALTLIQTRKIRNFPVVLFGSEFWGGMMRWVEEQLLGSKYIAEGDLRL
                     LHLTDSPSEVVDIVVRSQSALDRLGEGYDY"
     gene            complement(4406..5164)
                     /locus_tag="VD968_04475"
     CDS             complement(4406..5164)
                     /locus_tag="VD968_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002487914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HYE13680.1"
                     /translation="MLHNKFGIIFGVANKRSIAWASAQACMEAGARLAFTYQSERLRE
                     NVEGLTAGTESPLAQCDVTKPEEVEATFAMVRERFGRLDFLIHSLAFAPREALEGEFV
                     QTTREAFLTALDISAYSLTELARAAAPLMTEGGSIVSMTYYGAEKVVPNYNVMGVAKA
                     ALEASTRYLASDLGKRGVRVNAISAGPINTLAARGVGNLSAMLKHHAEHAPLRRNVEA
                     REVGNAALFLCSPLSSGITGEVLHVDCGYNIMAF"
     gene            complement(5237..5590)
                     /locus_tag="VD968_04480"
     CDS             complement(5237..5590)
                     /locus_tag="VD968_04480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13681.1"
                     /translation="MLDDKFGIIFDVANKRSIAWASAQAAAETGGGEELTTFEVIAFA
                     VGVASLFVSFLALWVCFHFKSEADRVADETRRLLSEIRSESEAITRFGIGELERYGAA
                     ARSLMKRKNPRGRNG"
     gene            complement(5655..6638)
                     /locus_tag="VD968_04485"
     CDS             complement(5655..6638)
                     /locus_tag="VD968_04485"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HYE13682.1"
                     /translation="MAEVESLTGAGGGETVRCRYCGQLNQTRADAGQPRCGRCRLLLS
                     NEPHRKFADLNKHDYVHPADSRALAALRAIPGMDKAVTKLLNITGEPLINVIFMASAV
                     RVTPTQCPDLYAKLQVACTTLGVDMPELYVQQSPVVNAFTYGVDRTIIVLYSALLERL
                     TDEEVLAVIAHEVGHIHAEHVLYLTAARLLQAIADGAIAVSPIHNLVAMLISASMEAA
                     LKAWMRKAELSCDRAALLITQNPDVIGRTMMKLCGGTFASKVDYEQFLQQARDFQKNY
                     DDRALDRFWADIITSGLTHPFPIWRVSEILKWVESGEYGRLIEGAPASAAA"
     gene            complement(6768..>7639)
                     /gene="purH"
                     /locus_tag="VD968_04490"
     CDS             complement(6768..>7639)
                     /gene="purH"
                     /locus_tag="VD968_04490"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: protein motif:HMM:NF002049.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HYE13683.1"
                     /translation="HQLAALYETGEGGIAQAELLGGKEMSFNNYVDADAAWQLVCDFD
                     ETACAIIKHMNPSGVGTAATAEEAYRKALATDPVSAFGGVVAFNRRVDELAARALTEI
                     FTEVVIAPDYEEGAVEILKSKKNLRVLRAGEARRPEGLDFKHITGGVLVQTRDTHRLT
                     NADLKVVTKRAPTEEETGALLFAWTVCKHTKSNAIVYARAGQTVGVGAGQMSRVDSAR
                     IGAMRAQLPLAGSVAASDAFFPFRDGLDEVARHGVTAVIQPGGSVRDEEVIAAADSHG
                     IAMVFTGVRHFRH"
BASE COUNT         1342 a         2465 c         2519 g         1313 t
ORIGIN      
        1 gcaccgtggt ctggaaggct aagttcgacg cggcgccgta cctcacgctc caccgcttcg
       61 gcgtctcagc cggcaagcag gtcgagctga tggtctctct cccgctcgtc gagggcgtgg
      121 gcgcagacgc ttggctcgcc agggccgtcg agcagttcaa cgccacgtgc gagtcgctta
      181 agattgacgg taagaacaag ttcggcaccc gcctcaagcc ggacaaaata acggcagcgc
      241 tgaaagcgaa acggtaagac gatgacgaaa gccgcaatcg gcatcatagg gggcagcggc
      301 ctctaccaga tgcccgagtt gaaagaggtc gaagaggtaa gcgtgggaac gccgttcggg
      361 ccgccgtcgg acgccttcat cgtcggcaca ctcgaaggcg tcagggtcgc gttcctgccg
      421 aggcacggcc gcggccacag gctcctgcct accgagcttc cgttccgcgc caacatctac
      481 gcgatgaaga agctcggcgt cgagcgcatt ctctcggcct ccgccgtggg ctccttgcag
      541 gagcgttacg cgccgctcga catggtcatc cccgaccagt tcttcgaccg cacgcgcgcc
      601 cgcgcccgcg agtcaacctt cttcggcgac gggatagtcg cgcacataac cttcgcgcac
      661 ccggtctgcc cgcaggtcgg cgacgtgctc gaagagtctt gccgcgtggc cgaagtccgc
      721 gcgcaccgcg gcggcaccta cctctgcatg gaagggcccg ctttctctac gaaggccgag
      781 tcaaacgtct atcgctcgtg gggcatggac gtcatcggca tgacgaactt gcaggaggct
      841 aagctggcgc gcgaggccga aatctgctac tcgacgctcg ccctcgtcac ggactacgac
      901 tgctggcacg aagagcacga cgccgtctcg gtcgaaacgg tggtcgagta cctcaacaag
      961 aacgtccgca acgcgcagat aatcatgcgc gaggccgtgc ggcgactcgc ctcaactgcg
     1021 cgcgattgcg agtgcggctc cgcgctcaag agcgcgatct tcacgccgca ggaactctgg
     1081 cccgagccga caacggagag gctcgccgag atcatcaaaa agtaccggaa gcagtgacgg
     1141 aggtgtttta atgagaaagt ttatcctgct cggcggcgcc gcgctggcgc tctcactatc
     1201 cgcacaggcc atgcgcgcgc agtcgggcac ggtcgcgaag gggccggacc cggagacggt
     1261 gaaggatttg gaggcggaga agagcgcgat gcacgagctg ggcgtggcgc gccactactt
     1321 caagatgaag aaggcttacg tcgccgcctt caagcgcacg gaggagctga tagcaggcta
     1381 ccccgagttc tcgcggctcg acgaggcgct ctacatcgcc ggcatgagta gcctctacct
     1441 gtccgagggg aagggtaagc aggccgtccc gaaggcgccg gccgagaggg ccgccgagtt
     1501 cacgccagag gcgcttcgct cgaacgcccg ggcctacctc gcccggctcg tcaaggagtt
     1561 ccccgagagc aagttccgca aggacgccga cgaagcactc gcgcagctcg gcccggagaa
     1621 gcagtaggca ggaggcagaa ggcagaaggc agtcgagggc gccttcttcg gctgctttct
     1681 gccttccgcc ttcttcacga atcccacaca ggagacctaa aacaagtgtc attgctggtt
     1741 gtcggttcgg tggcgttcga cgctgtcgag acgcccttcg ggtcgcgcga gaagatgctg
     1801 ggcggctcgg ccactcactt ctcgctctcg gcgagcttct tcacggacgt gcgggtcgtc
     1861 ggcgtcgtgg gcgaggactt cggcggcgag gagatgcgcg tcttcgagga gcgcggcatt
     1921 aacaccgacg acctcgagcg cgtcgcgggc gagaccttct tctggcgcgg ccgttacgac
     1981 ttcgacttga acaccgccca cacgctcgac acgcgcctca acgtcttcgc agacttccgg
     2041 ccgaagctat cggaagcctc ccagcgctcg cgcatggtct tcctcggcaa catccagccc
     2101 gagttgcagc gcggggtgcg gcgggaggtg aggggcgcgg agctggtcgc cctcgacacg
     2161 atgaactact ggatcacttc cgtccccgag caggtcgagg ccgccatacg cgaggttgac
     2221 gtggtcatca tcaacgacgc cgaggcccga cagctctcga aggagccgaa cctgataaag
     2281 gccgcgcgca ggattctctc gtgggggccg cgcgccctgg tcatcaagcg cggcgagtac
     2341 ggcgccgcca tgttcaccga cggcgcctac ttcgccatcc cggcataccc gctcgagtct
     2401 gtctttgacc cgacgggcgc cggcgacacc ttcgccggcg gcttcatggg ctacctcgcg
     2461 agctccggaa cggtggacga ggccgccatg cggcgcgcga tcatcttcgg ctcggtgatg
     2521 gcctccttca acgtcgagga gttcggcacc gagcgcgtgc agcgcctcac gcaccgggag
     2581 ataaacgagc gcttcagcgc cttcaagcgc atgacccact tcgaggaaat ccccttcgag
     2641 cgcccggcgg cggcggccac ggagaagtga agcgccgcgc cgggactttt tacggccgcc
     2701 ccgccgctct tgatgtataa tccgtgcgcc gctttaagtt cccgagaaga ttccgaggtg
     2761 ggggattcat aaatgttctg tcccgtttgc gagtcggagt acagggaggg catcacgcgc
     2821 tgcccggacg acggcgcgga gctggtagcg cgcctcacgc ccgagaacag cccgcacgac
     2881 cacagcgagg cgcgttacgt gccgctgcac aacataggct ctcccgccga ggccgagatg
     2941 gtcaacgaca tcctcacgca gaacggcata cgctcggccg tgcagtcggg cggcatggac
     3001 gccttcgcgc cgctgctctc gacgagctcc cccggcgcgc tcgtcctcgt tgacgagcgc
     3061 gacttcgacc gcgcgcagga aatctacaac tccttcttcg gcagcgacac cacgcccctc
     3121 accggcgcga ccgacgagga ggagaagggc ggagaggacg acgactgagc gctctggcgg
     3181 ctccccttcg gaggtctatt cgtggctgaa gcaggctcgg cggcgattgt cgtgatgatg
     3241 acggcgggga gcgaggagga ggcttcgcgc ctggcggaga tgctcgtcgg cgcgcacctc
     3301 gccgcgtgcg tccagataat gcagaagatg gagtcggtct atcgctggaa gggcgaggtt
     3361 caccgcgcgc cagagttcct gctgctggtg aagacgacgg ccgcctgctt cgacgagctg
     3421 gagagggagg tgcgcgctct ccacacctac gacacgccgg agataatcgc gctgcccgcc
     3481 acgcacgtct ccgcgcccta ccacgagtgg ctgacctcga acgccttccc gccgctcgtc
     3541 tcgcgcctcg cgggcggcga cgacggcccc gacgggcagg acagctagta gtcgtagccc
     3601 tcgcctagac ggtcgagcgc gctctggctg cgcacgacta tgtcaaccac ctcggacggc
     3661 gagtccgtca ggtgcagcag ccgcaggtcg ccctcggcga tgtacttcga cccgagaagc
     3721 tgctcctcga cccaccgcat catcccgccc cagaactccg agccgaacag cacgacgggg
     3781 aagttcctta tcttgcgggt ctgtatgagc gtgagcgcct cgaacagctc gtcgagcgtg
     3841 ccgaagccgc cggggaagat gatgaaggcc gtgctgtact tgacgaacat cgtcttgcgc
     3901 acgaagaagt atttgaaggt gagcgagcgc gtctggtacg ggttaggctg ctgctcgaaa
     3961 ggcagctcga tgttgcagcc gatggagacg ccgcccgcgt cgagcgcgcc gcggttcgaa
     4021 gcctccatga tgccggggcc gccgcccgta atcaccgcga agcccgcctc gaccagcagg
     4081 gccgccgtct cctgcgccgc tgcgtagaag gggctgtcgg cgggcgtgcg cgccgagccg
     4141 aatatggcga cgccgcggtc aacggtcgcc agctcgtcga agccctcgac gaactcgccc
     4201 atgatgcgga acacccgcca cgtgtccgtg tgagtgaact cgtcggccct cggcgtctcg
     4261 agcagttgct cgtcctgtgt cgtgtgccgg gcgccctgcg cctcgatccc cgcctggtcg
     4321 ttctcagaca tgattagaag caattagcaa tcagcggccg gctttcagtt aaaaacaaaa
     4381 agatgattgc ccgccgctgt tcgctttaaa aagccatgat gttgtagccg cagtccacgt
     4441 gtaggacttc gccggtgatg ccggaggaga gggggctgca aaggaagagg gcggcgttgc
     4501 cgacctcgcg ggcctcgacg ttgcggcgta ggggcgcgtg ctcggcgtgg tgcttgagca
     4561 tggcggagag gttgccgacg ccgcgcgcgg cgagcgtgtt gatggggccg gcgctgatgg
     4621 cgttgacgcg cacgccccgc ttgccgaggt cggaggccag gtagcgcgtg ctcgcctcta
     4681 gcgccgcctt agccacgccc atcacgttgt agttcggcac caccttctct gcgccgtagt
     4741 aggtcatgga gacgatgctg ccgccctcgg tcatcaacgg cgccgcggcg cgcgcgagct
     4801 cggtcagcga gtaggcgctt atgtcgagcg ccgtcaggaa ggcttcgcgc gtcgtctgca
     4861 cgaactcgcc ttcgagcgcc tcgcgcggcg cgaacgcgag gctgtggatg aggaagtcga
     4921 ggcggccgaa gcgctcgcgc accatcgcga aggttgcctc gacctcctcg ggcttcgtca
     4981 cgtcgcactg ggcgagcggc gactcggtgc cggccgtcaa gccctcgacg ttctcgcgca
     5041 ggcgctcgct ctgataggtg aaggcgaggc gggcgcccgc ctccatgcag gcctgcgccg
     5101 aggcccaagc tattgagcgc ttgttagcga cgccgaagat gatgccaaac ttgttgtgta
     5161 gcatagagtc gcagtcctta tgcacgcccg ggccgtaata ccatataccg cgaaacgcgg
     5221 ctctcgcccg aacctcttaa ccgtttctcc cccgcgggtt ttttcgcttc atcagactac
     5281 gcgctgccgc gccgtagcgc tcaagctcgc cgatgccgaa acgggtgatg gcttcagatt
     5341 cagaccttat ctcgctaagg agcctccggg tctcgtcggc aactctgtca gcctcacttt
     5401 tgaagtggaa gcaaacccat aacgccaaga acgagacgaa gagggaggca acgcctaccg
     5461 cgaatgcgat tacctcgaaa gtagttaact cttccccccc gcctgtctcc gcggcggcct
     5521 gcgccgaggc ccaggctatt gagcgcttgt tcgcaacgtc gaagataatc ccgaacttat
     5581 cgtctagcat aacctgctac cttttaaatc gtgtgccgcg ccagccgcta cacacgacct
     5641 atgagcgtag ccggtcatgc ggcggcgcta gcgggcgcgc cttcgatgag gcgcccgtac
     5701 tcgccgctct cgacccattt aaggatttcc gacacgcgcc agatggggaa ggggtgcgtc
     5761 agccccgagg tgattatgtc ggcccagaag cggtcgagcg cgcggtcgtc gtagttcttc
     5821 tggaagtcgc gcgcctgctg taggaactgc tcgtagtcaa ccttagacgc gaaggttccg
     5881 ccgcacagct tcatcatcgt ccggccgatg acgtccgggt tctgcgtgat gagcagcgcg
     5941 gcgcggtcgc aagaaagctc ggccttgcgc atccacgcct tgagcgccgc ctccatcgag
     6001 gccgaaatca gcatcgcgac gaggttgtga atcggcgaga cggcgatggc gccgtcggcg
     6061 atggcctgaa gcagccgcgc ggccgtcagg tacagaacgt gctcggcgtg tatgtggccg
     6121 acctcgtggg cgatgacggc gagcacctcc tcgtccgtga gccgttcgag cagcgcggag
     6181 tagaggacga tgatggtgcg gtcaacgcca tacgtgaagg cgttgacgac gggcgactgc
     6241 tggacgtaaa gctccggcat gtcaacgccc agagtggtgc aggcgacctg tagcttggcg
     6301 tagaggtcgg ggcattgcgt gggggtgacg cgcaccgcgc tcgccatgaa gatgacgtta
     6361 atgagcggct cgcccgtgat gttcaggagc ttcgtcacgg ccttgtccat gccgggtatc
     6421 gcccgcaggg cggcgagcgc gcggctgtcg gccgggtgta cgtagtcgtg cttgttgagg
     6481 tctgcgaact tcctgtgcgg ctcgttcgag agcaggaggc ggcagcgccc gcagcgcggc
     6541 tgcccagcgt cggcccgcgt ctggttgagc tgtccgcagt agcggcagcg gacggtctcg
     6601 ccgccgcccg cgccggtcag ggattcgact tcggccatct attgtcccct tcggagaaag
     6661 tgaaaccgac aggcccacgg ggaagacgca ctgtttcggt aagcctgttc gttgccgcaa
     6721 gtatagcaga gaagaagcct tcggcaatcg gcggccgggc gccggcttta gtgcctgaag
     6781 tgcctgacgc cggtgaatac catcgcgatg ccgtgggagt cggctgccgc gatgacttct
     6841 tcgtcgcgga ctgagccgcc gggctgtatg acggccgtga cgccgtggcg ggcgacctcg
     6901 tcgaggccgt cgcggaaggg gaagaaggcg tcggaggcgg cgacggagcc ggctaatggg
     6961 agctgcgcgc gcatagcgcc gatgcgcgcc gagtcaacgc gcgacatctg cccggcgcct
     7021 acgcccaccg tctgcccagc ccgcgcatag acgatggcgt ttgacttcgt gtgcttgcag
     7081 accgtccacg cgaaaaggag cgcccccgtc tcttcctcgg tcggcgcgcg cttcgtcacg
     7141 accttgaggt ctgcgttagt aaggcggtgc gtgtcgcgcg tctgcacgag cacgccgccg
     7201 gtgatgtgct taaagtccaa cccttcgggc cgtcgcgcct cgcccgcgcg tagaacccgc
     7261 aggttcttct tcgacttcag aatctcgacg gcgccctcct cataatcggg cgcgatgacg
     7321 acctccgtga aaatctcagt cagggcgcgg gcggccagct cgtcaaccct gcgattgaag
     7381 gccacgacgc cgccgaaggc cgagacgggg tctgtggcta gcgccttcct gtaagcctct
     7441 tcggccgtcg cggccgtgcc gacgccggaa gggttcatgt gcttgattat ggcgcaggcc
     7501 gtctcgtcga agtcgcagac gagctgccat gcggcgtcgg cgtcaacgta gttgttgaag
     7561 gacatctctt tgccgccgag caactccgcc tgcgcgatgc ccccttcacc cgtctcatag
     7621 agcgcggcga gttggtgag
//
LOCUS       DASPKR010000155         4799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1443409, whole genome shotgun sequence.
ACCESSION   DASPKR010000155 DASPKR010000000
VERSION     DASPKR010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4799)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4799
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1443409"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..632)
                     /locus_tag="VD968_04495"
     CDS             complement(<1..632)
                     /locus_tag="VD968_04495"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: protein motif:HMM:NF014499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HYE13684.1"
                     /translation="MRLKRSSGILLHPTSLPGRFGIGDLGGEAYEFVDFLAAAGQGYW
                     QVMPLGPTGYGDSPYSSFSASAGNTNLVSPEKLAEAGLLKAVDLDGAPDLPEERVDYG
                     KVIDYKRGLLEKAFENFKAKLSGDGALRSDYEGFLDFASAWLEDYALFSALKDEHGGK
                     SWHEWPAGLARREAAALREARDEFGGRIEAHKFFQYAFFQQWLKLKRYAN"
     gene            complement(664..2709)
                     /locus_tag="VD968_04500"
     CDS             complement(664..2709)
                     /locus_tag="VD968_04500"
                     /inference="COORDINATES: protein motif:HMM:TIGR01561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HYE13685.1"
                     /translation="MAEVVRELAFTPEEARDAEATLGREWLVTNGLGGFASGSLAGVP
                     TRRYHGLLVSALHTPLGRTVMLNHLSEWLRLPAGGRYQLGGQERAGGRLELPGAECLR
                     AFRLEDGLPVWLFEAGGALLEKRVLMPHMQNTVHLSYRLLDGPEEVRLKLRPAVQFRP
                     LEAPVSRAVTEPHTITAVEDRIELSSGAEFPPLRLKIYGRDATFALDGRSFDDIFYRA
                     EARRGYDHTGRLWSPGYFSVDVTREAGATLVASTESWQLIAALPPEEAAAAEGERRRR
                     LLASAHPNARASVAAELVLAADQFVITPSGRQEDAARAHATGEELRSVIAGYHWFTDW
                     GRDTMISLEGLTLTTGRQAEAGWILRTFGHYVRDGLIPNMFPDGSTEGLYHTADATLW
                     FFHAVDRYVRATGDLATLEALMPKLFEIVERHTEGTRFGIKVDERDGLLRQGEEGYQL
                     TWMDAKCDGWVVTPRRGKAVEINALWYNALRLLEGWARRLGGDEAARPLAEAAARAYR
                     SFNERFWYEEGGHLYDVVDGDDGRDDPACRPNQLLAFSLGHPVLERSRWESVLKVARE
                     QLLTPTGLRSLSPRHPDYRPNYHGDLRTRDAAYHQGTVWAWLIGPFIDAWLKTYPQDR
                     AGARRLLEGFAPHLNEAGVGSVSEIFDAEPPYTPRGCIAQAWSVAEVLRCWALTSEG"
     gene            complement(2702..4666)
                     /gene="treZ"
                     /locus_tag="VD968_04505"
     CDS             complement(2702..4666)
                     /gene="treZ"
                     /locus_tag="VD968_04505"
                     /inference="COORDINATES: protein motif:HMM:TIGR02402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malto-oligosyltrehalose trehalohydrolase"
                     /protein_id="HYE13686.1"
                     /translation="MGAENIRRRLPVGAEVLPSGAGTHFRVWAAGRKLVEVVVERVGA
                     FALEPEEGGHFSGLARGVGEGALYRFRLDGGERLFPDPASRHQPGGPHGPSRVVDATR
                     YRWQDAGWRGAAVKGQVIYELHVGPFTREGTWAAAARELEELAALGVTVVEMMPAAEF
                     PGRFGWGYDGVSLFAPTRLYGEPDDLRRFVDEAHRVGVAVILDVVYNHLGPDGNYLRE
                     FSPDYFTDRHKTEWGDAINFDGPGSRGAREFFLSNARYWVEEFHFDGLRLDATQSIQD
                     DSPAHFLSELTAEVRDAARGRRTIIVGENEPQHARLLRPVPEGGYGLDALWNDDFHHS
                     AVVALTGRREAYYTDYLGAPQEFVSSAKRGFLYQGQRYKWQRGRRGTPTRGLAPEAFV
                     SFIENHDQVANSARGERLHRLASPGRLRAMTALLLLAPATPMLFQGQEFASSAPFLYF
                     ADHSGELARKVREGRREFLAQFASVATPETQALLPDPADPDTFERCKLDFSERERNSK
                     VYELHRDLLRLRREDAVLASQAAGGIDGAVLGDEAFLLRLFGEEGDDRLLLFNFGRDL
                     LLNPAPEPLLAPPEGSIWTVLWSSESHRYGGAGTPPPETRDNWRLAGHSALVMAPARA
                     GGAEDLAAGVGEVSEEEETRRELLGRLRDG"
BASE COUNT          718 a         1645 c         1679 g          757 t
ORIGIN      
        1 tcgttggcgt agcgcttgag cttgagccac tgttggaaga acgcgtactg gaaaaacttg
       61 tgagcctcga tccggccgcc gaactcatcg cgcgcctccc ggagcgccgc cgcttcgcgc
      121 cgcgcgagcc cggcgggcca ctcgtgccac gacttcccgc cgtgctcgtc cttcagggcg
      181 ctgaagagcg cgtagtcttc gagccacgcg gaggcgaagt cgaggaagcc ttcgtagtca
      241 ctgcgcagcg cgccgtcgcc cgagagcttc gccttgaaat tctcgaaagc cttctccaac
      301 aggccgcgct tatagtcaat caccttgccg tagtcaacgc gctcctcggg aaggtccggc
      361 gcgccgtcta aatccacggc tttaagcagg ccggcctcgg cgagcttctc ggggctcacg
      421 aggttggtgt tgccggcgga ggccgagaac gaagagtacg gcgagtcgcc gtagccggtc
      481 ggcccgagcg gcatcacctg ccagtagcct tgccccgccg cggcgaggaa gtcaacgaac
      541 tcgtaagcct cgccgcccag gtcgccgatg ccgaagcggc ccggcaggct cgtagggtgc
      601 agcagtatcc cgcttgatcg tttgagtctc atctttcccc cttcgctcgg ttttagaacc
      661 tgactaaccc tcggaagtca aagcccagca gcgcagcacc tcggcgacgc tccacgcctg
      721 cgcgatgcag ccgcgcggcg tgtagggcgg ctcggcgtcg aagatttcgc tgacggagcc
      781 gacgcccgcc tcgttcaagt gcggcgcgaa gccttcgagc agtcggcgcg cgcccgcgcg
      841 gtcttgcggg taagtcttca gccatgcgtc tatgaagggg cctatgagcc aggcccagac
      901 cgtgccctgg tggtaggcgg cgtctcgcgt gcgcaggtcg ccgtggtagt tcggcctgta
      961 gtcggggtgg cgcggcgata gcgagcgcag ccccgtgggc gtgagcagtt gctcgcgcgc
     1021 gaccttcaag accgactccc agcgcgagcg ttccagcacc gggtggccga gcgagaaggc
     1081 gagcagttgg ttggggcggc aggcggggtc gtcgcgcccg tcgtcgccgt caaccacgtc
     1141 gtagaggtgg ccgccctcct cgtaccagaa gcgctcgttg aaggagcggt aggcgcgggc
     1201 ggcggcctct gcgagcggcc gcgccgcctc gtcgccgccc agacggcgcg cccacccttc
     1261 cagcaggcgg agcgcgttat accagagcgc gtttatctcg acggccttgc cgcgccgcgg
     1321 cgtcaccacc cagccgtcgc acttcgcgtc catccacgtc aactggtagc cctcctcgcc
     1381 ctgacgcagg aggccgtcgc gctcgtcaac ctttatcccg aagcgcgtgc cttcggtgtg
     1441 ccgctcgact atctcgaaga gcttcggcat gagggcttcg agcgtggcga ggtctccggt
     1501 tgcgcgcacg tacctgtcaa cggcgtggaa gaaccagagc gtcgcgtcgg ccgtgtggta
     1561 gagcccttcg gtgctgccgt cggggaacat attcgggatg aggccgtcgc ggacgtaatg
     1621 gccgaaggtg cgcagaatcc agccggcctc cgcctggcgc cccgtcgtca gcgtcagccc
     1681 ttcgaggctt atcatcgtgt cgcggcccca gtcggtgaac cagtggtagc cggcgatgac
     1741 ggagcggagc tcttcgcccg tggcgtgcgc gcgcgcggcg tcctcctgcc ggcccgaggg
     1801 cgttatgacg aactggtcgg cggcgagcac cagttcggcc gctacactgg cgcgcgcgtt
     1861 cgggtgggcc gacgcgagca gccggcgcct gcgctcgccc tctgcggcgg cggcctcttc
     1921 gggcggcagg gcggctatga gctgccagct ctccgtggag gcgacgagcg tggcgcccgc
     1981 ctcgcgcgtc acgtcaacgc tgaagtagcc ggggctccat agccggcccg tgtggtcgta
     2041 gccgcgccgg gcctccgcgc ggtagaagat gtcgtcgaag ctcctgccgt cgagcgcgaa
     2101 ggtcgcgtcg cggccgtaga ttttgagtcg cagcggcggg aactccgcgc ccgaagaaag
     2161 ttctatgcgg tcttcgacgg ccgtgatggt gtgcggctcc gtgacggcgc ggctgaccgg
     2221 ggcttcgagc gggcggaact gcacggcggg ccggagcttc agtcgaacct cctcggggcc
     2281 gtcgagtagg cggtagctca ggtgcacggt gttctgcatg tgcggcatca gcacgcgttt
     2341 ctccaggagg gcgccgcccg cctcgaagag ccagacgggc aggccgtctt cgaggcggaa
     2401 cgcgcgcagg cactctgcgc ccggaagctc cagcctgccg cccgcgcgct cctgcccgcc
     2461 gagctggtag cggccgcccg caggcaagcg cagccactcc gaaaggtggt tgagcatgac
     2521 ggtgcgaccg agcggcgtgt gaagcgccga gactaacagg ccgtggtagc gccgagtcgg
     2581 cacgcccgcg agcgaccccg acgcgaaccc gcccaggccg ttcgtcacta gccactcgcg
     2641 cccgagcgtg gcttccgcgt cgcgcgcctc ctcgggcgtg aacgccaact cgcgaaccac
     2701 ttcagccatc cctcaacctc ccgagcagct ctctgcgcgt ctcctcttct tcgctcacct
     2761 caccgacgcc cgcggccaaa tcttccgccc cgcccgcccg cgcgggcgcc atgacgagcg
     2821 cggagtggcc cgcgagccgc cagttgtccc ttgtctcggg cggcggcgtg cctgcgccgc
     2881 cgtatcggtg tgactcgctc gaccacagca ccgtccagat tgagccttcg ggcggcgcga
     2941 gcagcggctc cggcgcaggg ttgagcagaa ggtcgcggcc gaagttgaag aggagcaggc
     3001 ggtcgtcacc ttcttcgccg aagaggcgga gcaggaaagc ttcatcgccg agcacggcgc
     3061 cgtcaatccc gcccgcggcc tgcgaggcta gaacggcgtc ctcgcgcctg agccgcagga
     3121 ggtcgcggtg aagctcgtaa actttgctgt tgcgctcgcg ctcggagaag tcgagcttgc
     3181 agcgctcgaa ggtatcgggg tcggcggggt cgggcagaag cgcctgcgtt tcaggcgtgg
     3241 cgacgctagc gaactgcgcg aggaattcgc gccggccctc gcgcaccttc cgggcgagct
     3301 cgcccgagtg gtcggcgaag tagaggaagg gcgccgacga ggcgaactcc tgtccctgaa
     3361 aaagcatggg cgtggcgggc gccagcagca gcagcgccgt catcgcgcgc aggcgcccgg
     3421 ggctcgcgag ccggtgtagg cgttcgccgc gcgcggagtt ggcgacctgg tcgtggttct
     3481 ctatgaagct gacgaaggct tcgggcgcga ggccgcgcgt gggcgtgccg cgccggccgc
     3541 gctgccactt gtagcgctgg ccctggtaaa gaaagccgcg cttggcggag gagacgaact
     3601 cctgcggcgc gccgaggtag tccgtgtagt atgcctcgcg cctgcccgtg agcgcgacga
     3661 cggcgctgtg atgaaagtcg tcgttccaga gcgcgtcaag gccgtagccg ccctccggga
     3721 ccggccgcag cagccgggcg tgctgcggct cgttctcgcc gacgattatc gtccgccggc
     3781 cgcgcgcggc gtcgcgaacc tccgccgtta gctcggagag gaagtgcgcg ggcgagtcgt
     3841 cctgaatgct ctgggtggcg tctaagcgca ggccgtcgaa gtggaactcc tcgacccagt
     3901 agcgggcgtt cgatagaaag aactcgcgcg cgccgcggct gccggggccg tcgaagttta
     3961 tcgcgtcgcc ccactcggtc ttgtggcggt cggtgaagta gtcgggcgag aactcgcgca
     4021 ggtagttgcc gtcggggccg aggtggttat agaccacgtc gagtatgacg gcgacgccga
     4081 cacggtgggc ctcgtccacg aagcggcgga ggtcgtcggg ctcgccgtaa agccgcgtcg
     4141 gcgcgaagag cgaaacgccg tcgtagcccc agccgaaccg gccggggaac tccgccgccg
     4201 gcatcatctc gacgacggtc acgcctaagg cggcaagctc ttcaagctcg cgcgcggccg
     4261 ccgcccaagt cccctcgcgc gtgaaggggc cgacgtgcag ttcgtatatc acctgcccct
     4321 tgacggcggc gcctcgccac ccagcgtcct gccatcggta tctcgtcgcg tcaaccacgc
     4381 gcgaggggcc gtgcggccct ccgggctggt gccgcgaggc ggggtcgggg aagagccgct
     4441 cgcccccgtc gaggcggaat cggtagagcg cgccctcgcc taccccgcgc gcgagcccgg
     4501 agaagtggcc gccctcctcg ggctcaagcg cgaaggcgcc gacgcgctcg acgactacct
     4561 ctacgagctt gcgccccgcc gcccacacgc ggaagtgcgt gccggcgccc gacggcaaca
     4621 cctcggcccc gacgggcaga cgcctgcgaa tgttctccgc ccccattctt cttcttcgct
     4681 tcggccggaa tttaagtcgg tgggattcta aaacaaacgc gggcgcgggc ggtagcgaca
     4741 cggcccgcgc tcgcgttaat gttacacacg ccgacgatgc tgaccctgcc gatagattc
//
LOCUS       DASPKR010000156         5731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1184016, whole genome shotgun sequence.
ACCESSION   DASPKR010000156 DASPKR010000000
VERSION     DASPKR010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5731)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5731
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1184016"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1248)
                     /locus_tag="VD968_04510"
     CDS             complement(<1..1248)
                     /locus_tag="VD968_04510"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF018444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HYE13687.1"
                     /translation="MEEIFGRGGLIARAHPDYEHRPGQIQMAEAVLRAFEERRHLIVE
                     AGTGTGKTLAYLVPAVAAALERRTRVVVSTGTKNLQEQLMGKDIPFLQRVLPRKFTAA
                     YMKGRGNYACLQRIKRAETSPVLEGLEDVDYFDEVRRWARDSGTGDRAELVELPENLS
                     FWRHIDARSEICLGQKCPDYDACFITRMRQRALDADIVIVNHHLFFADLALRGGEYGQ
                     VLPDYSAVIFDEAHQIEDVAAEYFGAQVSNYQIEDLLRDLQQLPVTDSAVNRELTRSS
                     GRVARFAEQFWMGFTRAAAAGEARGDEGRWPLVPGTFARRTAAGDVQATPLGESYLGL
                     DGALERLETTLDVIKDKPPEVENLLRRIRETRFNLEFIVAGDDRRYVYWAERRGRGLF
                     LRASPIDVSTLLQDKLFERVETVV"
     gene            complement(1723..1863)
                     /locus_tag="VD968_04515"
     CDS             complement(1723..1863)
                     /locus_tag="VD968_04515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13688.1"
                     /translation="MPDTDRPQGEVDPSEDTGVDPSEGTGVDPSEDGGDNVDPSEDTG
                     DR"
     gene            complement(2033..3316)
                     /gene="glyA"
                     /locus_tag="VD968_04520"
     CDS             complement(2033..3316)
                     /gene="glyA"
                     /locus_tag="VD968_04520"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HYE13689.1"
                     /translation="MSDLLNAPLAEVDPLVSRAVADEVRRQAEGLELIASENFVSEAV
                     LEAMGSVFTNKYAEGYPRKRYYGGCEFTDVVEQAAIDRAKELFGAEHANVQPHSGSQA
                     NMAVYLSALEYGDAILGMNLSHGGHLTHGHPLNFSGFSYNVAEYGVSRETEQIDYDEL
                     ESKAREHRPKLIVCGASAYPRTIDFARIGEIARSVGARVMADIAHIAGPVAAGFHPSP
                     VPHADYVTTTTHKTLRGPRGGLILCRAEHATEVDKKLFPGIQGGPLVHIIAAKAVAFG
                     EALRAEFKEYQRRTLANAKALAAGLQEQGFRLVSGGTDNHLLLVDVFMGGRGVTGKVA
                     EKALEAAGITVNKNTIPFDTNKPFVASGVRLGTPALTTRGMGEAEMREVAGLIAAVLR
                     EPESEGVRERVRRSVRELAARFPLYPKRARAAGAE"
     gene            3536..4657
                     /locus_tag="VD968_04525"
     CDS             3536..4657
                     /locus_tag="VD968_04525"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HYE13690.1"
                     /translation="MRALEAAFALSLLFVLMIIDPNLAPGQTAGPQQQPPDTTVDAAT
                     RKEVIDNLLKRLNDSYVFPETAAKMGQSVRARAAAGEYDKIESARQFAETITAHLREV
                     SRDKHLGVHFFHRGAPPEEEDDDREPSAEQREQMRRQAARVNFGFERVERLPGNVGYL
                     DFRFFIDPEVGKETVAAAFNFLANTDALIIDLRKNGGGDPKMVALICSYLFGPEPVHL
                     NDLYWREGNRTEEYWTLKEVAGRRYAGKDVYVLTSNRTFSGAEEFSYNLKNLKRATII
                     GETTGGGAHPGRGMRLAKNFGAFIPTGRAISPVTKTNWEGTGVEPDVKVPADQALKVA
                     HLAALKKGAERLTDEDLKREYQRHIDMLQKELGDAQAKK"
     gene            4803..>5731
                     /gene="proS"
                     /locus_tag="VD968_04530"
     CDS             4803..>5731
                     /gene="proS"
                     /locus_tag="VD968_04530"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HYE13691.1"
                     /translation="MRWSKYFIPTLREDPADAEVVSHRLLLRAGFIRQLGSGIYSFLP
                     LGWRVAQRATKILREEMNRIGGQEFFLPALHPAEVWKESGRWTAIGEDMFRFHDRKGA
                     DMCLGMTHEEIFTSIARHEVRSYKQLPQVWYQIQIKFRDEPRPKSGLMRLRTFIMKDA
                     YTFDVDRAGLDRSFEDQREAYKRIFTRCGLKFAIVEASSGAMGGSESNEFIVKTPAGE
                     DLIASCEACGYAANVEKATSRLPAVEDEAGPAAPEEFPTPGVRTIEDLVTFPGGAAAD
                     RQIKSLVYFATDAVTQEQYAVLALLRGDHPLHET"
BASE COUNT          968 a         1909 c         1885 g          969 t
ORIGIN      
        1 cacgaccgtc tcgacgcgct cgaacagctt gtcttgcagc agggtggaca cgtcaatcgg
       61 cgacgcgcgc aggaagaggc cgcgcccccg ccgctcggcc caatagacgt agcggcggtc
      121 gtcgcccgcg acgatgaact ctaggttgaa gcgcgtctcg cgtatgcggc gcagaaggtt
      181 ctcgacctcg ggcggcttat ccttaatcac gtcgagagtc gtctctaggc gctcgagcgc
      241 gccgtcgagg ccgaggtagc tttcgccgag gggcgtcgcc tgcacgtcgc ccgcggcagt
      301 cctgcgcgcg aacgtccccg gcacgagcgg ccagcgcccc tcgtcgccgc gcgcctcgcc
      361 cgctgccgcg gcgcgcgtga agcccatcca gaactgctcg gcgaagcgcg ctacgcggcc
      421 cgacgagcgc gtcaattcgc ggttgacggc ggagtcagtg acggggagtt gttgcaggtc
      481 gcgcaggagg tcttcgatct ggtagttaga gacctgcgcg ccgaagtact cggcggccac
      541 gtcctctatc tggtgcgcct cgtcgaagat gacggccgag tagtccggga gcacttggcc
      601 gtactcgcca ccgcgaagcg caaggtctgc gaagaagagg tggtggttga cgattacgat
      661 gtctgcgtcg agggcgcgct ggcgcatgcg cgttataaag catgcgtcgt agtccgggca
      721 cttctggccg aggcagattt ctgagcgcgc gtctatgtgg cgccagaagg agaggttctc
      781 gggcagctcg acaagctccg cgcggtcgcc cgttcctgag tcgcgagccc agcggcgcac
      841 ctcgtcgaag tagtcaacgt cttcgagccc ttcgagcacg ggcgacgttt cggcgcgctt
      901 tatcctctgt aggcaggcgt agttgccgcg ccccttcatg tacgcggcgg tgaacttgcg
      961 cgggagcacg cgctggagga aggggatgtc cttccccata agctgctcct gcaagttctt
     1021 cgtccccgta gagactacga cgcgcgtgcg gcgctcgagc gcggcggcga cggccgggac
     1081 gaggtacgcg agcgtctttc ccgtccccgt gcccgcctcg acgatgaggt gccggcgctc
     1141 ctcgaaggcg cgcagcacgg cctcggccat ctgaatctgg ccgggcctgt gctcgtagtc
     1201 tgggtgcgcg cgcgctatca ggccgccgcg cccgaaaatc tcttccataa agcttgagtc
     1261 gagaaggcca accgactact cgcgggtggg agcgcgcggg agcctctacg gtgccgttcg
     1321 tctaacgttc cccattttac ccgtttgggc cggaaaagtc ttaaacgtcg gcgaaaaaag
     1381 tgggcgccgc gcgccggggc ttttccgaag cctcgtggcc gcgcggcgcc ctcgcgttcg
     1441 gggtgctcag gcgctcgcct gtcgggcgga gggcacgcgt ttggtcgcct aactcaacca
     1501 cggccccgct cgtctttacg gccccccgaa tccctttccg aaatcggtcg ccgtactatt
     1561 acgcgcgaaa cgcgcgcgga aactccaacg ctgtttttta agcctcccga tgttttaaag
     1621 gcgcctctgc cggcacgggc ttccgaggaa gaggcgggcg gcgcgacgtc gaacaccgcg
     1681 ccgcccgggt tgagaggttt ttttgtaagc gcggagactg ttttagcggt cgccggtgtc
     1741 ctcagacggg tcaacgttgt cgccgccgtc ttcggagggg tcaacacccg taccctcgga
     1801 ggggtcaaca cccgtgtcct cggaggggtc aacttcgcct tgcggtctgt ctgtatcggg
     1861 catgaggttc tctcctttac tgttcgcagg tcgagacggg ccgccgggcc cggcgcgaat
     1921 gtcgtttgtc gagcgaggtg tcagaactct ggcgccgtca gcgcccgtgc gcccgccgcc
     1981 tcaggtaaga aggagtcaag ggccgaaacg tccagcgccc gcgccgcccg cttcattcgg
     2041 cgccggcggc gcgcgcacgc ttcgggtaga gcgggaagcg tgcggccagc tctctgacgg
     2101 agcggcgtac gcgctcgcgc acgccttccg actcgggctc gcgcagcacg gccgcgatga
     2161 gccccgcgac ttctcgcatc tcggcctcgc ccataccgcg cgtcgtgagc gcgggcgtgc
     2221 cgagccgcac gcccgacgcg acgaagggct tgttggtgtc gaacgggatg gtgttcttgt
     2281 tgacggttat gccggccgcc tctaaagcct tctcggccac cttgcccgta acgcccctgc
     2341 cgcccatgaa cacgtcaacg agcaagaggt ggttgtccgt cccgcccgag acgaggcgga
     2401 agccctgctc ctgaagcccg gcggcgagtg ccttggcgtt cgcgagcgtg cggcgctggt
     2461 actccttgaa ctccgcgcgt agggcctcgc cgaaggccac ggccttcgcc gcgatgatgt
     2521 ggacgagcgg gccgccctgt atgccgggga agagtttttt atcaacttcc gtggcgtgct
     2581 cggcgcggca gagtatgagg ccgccgcgcg gcccccgcag ggtcttgtgc gtggtggtgg
     2641 ttacgtagtc tgcgtgcggc acgggcgagg ggtggaaccc cgcggcgacg gggccggcta
     2701 tgtgcgcgat gtcggccatg acgcgcgcgc cgaccgagcg cgctatctcg ccgatgcgcg
     2761 cgaagtcaat ggtgcgcggg taggccgagg cgccgcatac gatgagcttc ggcctgtgct
     2821 cgcgagcctt gctctccaac tcgtcgtagt ctatctgctc ggtctcgcgc gagactccgt
     2881 actctgcgac gttgtaggag aagcccgaga agttcaaggg gtggccgtgc gtgaggtggc
     2941 cgccgtgcga gaggttcatg ccgagtatcg cgtcgccgta ctcgagtgcc gagagataga
     3001 cggccatgtt ggcctgcgag cccgagtgcg gctgcacgtt ggcgtgctcg gccccgaaca
     3061 gctcctttgc gcggtcaatc gccgcctgct cgaccacgtc ggtgaactcg cagccgccgt
     3121 agtagcgctt gcgcgggtag ccttcggcgt acttgttcgt gaagaccgag cccatcgcct
     3181 caagcacggc ctcgctgacg aagttctcgg acgcgatgag ctcgaggccc tcggcctgcc
     3241 ggcgcacctc gtcggcgacg gcgcggctga cgagcgggtc aacctccgcg agcggcgcgt
     3301 tcaaaaggtc gctcatctct cctcctcaaa aggccccgca gattcggttt ttcggtatgg
     3361 ctttgtaaaa gcgccccgat gttacatcac ggcccggcgc cgcggcaacg cggggccgcc
     3421 ggggccgtaa atccccgcgc gtctaaaaac tggaacttat cccccgtccc gtcgtaacat
     3481 atgaccagaa ctcgcattcg gtcacgagtc agaaaaaccg ggaggagaat tttcgatgag
     3541 agccttggaa gccgccttcg cactgtcgct cctgttcgtg ctgatgatta ttgaccccaa
     3601 cctggcgccg gggcagaccg ccgggccgca gcagcagccg cccgacacga cggtggacgc
     3661 ggcgacgcga aaggaagtga ttgacaacct cctgaagcgc ctcaatgaca gctacgtctt
     3721 ccccgagacc gccgcgaaga tggggcagtc ggtgcgcgcg cgcgcggcgg cgggcgagta
     3781 cgacaagatc gagagcgccc gccagttcgc cgagacgatc acggcgcacc tgcgcgaggt
     3841 cagccgcgac aagcacctcg gcgtccactt cttccaccgc ggcgctccgc ccgaggagga
     3901 ggacgacgac cgcgagccct cggccgagca gcgcgagcag atgcgccggc aggccgcgcg
     3961 cgtcaacttc ggcttcgagc gcgtcgagcg cctgcccggc aacgtcggct accttgactt
     4021 ccgcttcttc atagaccccg aggtcggcaa ggagaccgtc gccgccgcct tcaacttcct
     4081 cgccaacacc gacgccctca tcatagacct ccgcaagaac ggcggcggcg accccaagat
     4141 ggtcgcgctc atctgctcct acctcttcgg ccccgagccc gtgcacctga acgacctcta
     4201 ctggcgcgag ggcaaccgca ccgaagagta ctggacgctc aaggaggtcg ccgggcgccg
     4261 ctacgcaggc aaggacgtgt acgtgctcac gagcaaccga accttctcgg gcgccgagga
     4321 gttctcctac aacctcaaga acctgaagcg cgcgaccatc ataggcgaga cgacgggcgg
     4381 cggcgctcac ccggggcgcg gcatgcgcct cgcaaagaac ttcggtgcct tcatcccgac
     4441 gggccgcgcc atcagccccg tcacgaagac gaactgggag gggacgggcg tcgagcctga
     4501 cgttaaagtc ccggccgacc aggccctgaa ggtcgcgcac ctcgcggcgc ttaagaaggg
     4561 cgccgagcgt ctcacggacg aagacctcaa gcgcgagtac cagcgccaca tagacatgct
     4621 ccagaaggag ctaggcgacg cgcaggccaa gaagtaatca ctcgattaaa ttcaagacgg
     4681 agccgcgagc tgaggtctcg cggctccgtt tcgcgtttgc cttccccctc ggcctgcgcg
     4741 agaatgtccg cctcattcag tggagctatt tcttacccaa ggagagcccg tcaaaaactt
     4801 ctatgcgctg gtcaaaatat ttcatcccga ctttacgcga agacccggcg gacgccgagg
     4861 tcgtctcgca ccgcctgctg ctgcgcgccg gcttcatacg gcagctcggc tcggggattt
     4921 actccttcct gccgctcggg tggcgggtcg cgcagcgcgc gacgaagata ctgcgcgagg
     4981 agatgaaccg gataggcggg caggagttct tcctgccggc gctacacccc gcggaggtct
     5041 ggaaggagtc tgggcgctgg acggccatcg gcgaggacat gttccgcttc cacgaccgca
     5101 agggcgccga catgtgccta ggcatgacgc acgaggagat tttcacgtca atcgcgcgcc
     5161 acgaggttcg ctcctacaag cagctcccgc aggtctggta tcagatacag ataaagttcc
     5221 gcgacgagcc gcgccccaag tccggcctga tgcgcctgcg caccttcata atgaaggacg
     5281 catacacctt cgacgttgac cgcgccggcc tcgaccgctc cttcgaggat cagcgcgagg
     5341 catacaagcg catcttcacg cgctgcgggc tgaagttcgc catcgtcgag gcaagctccg
     5401 gcgcgatggg aggctccgag tcgaacgagt tcatcgtgaa gacgcccgcg ggcgaagacc
     5461 tcatagcctc gtgcgaggcg tgcggctacg ccgccaacgt cgagaaggcg acctcgcgcc
     5521 tgcccgccgt ggaggacgag gcgggcccgg ccgcgcccga agagttcccc acgcccggcg
     5581 tccggacaat cgaagaccta gtgaccttcc ccggcggcgc agcagcagac cgccagatca
     5641 agtcgctcgt ctatttcgcg acggacgccg tgacgcagga gcagtacgcg gtgctcgcgc
     5701 tcctgcgcgg cgaccacccg ctgcacgaga c
//
LOCUS       DASPKR010000157         4965 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_407841, whole genome shotgun sequence.
ACCESSION   DASPKR010000157 DASPKR010000000
VERSION     DASPKR010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4965)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4965
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407841"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1291)
                     /locus_tag="VD968_04535"
     CDS             complement(<1..1291)
                     /locus_tag="VD968_04535"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HYE13692.1"
                     /translation="MFSDQFRRGEAEKSRFSGVKASRLVSSLSGVAWKAFQSVNTRLP
                     EGEAIRPKWAPGPLLKSYERTAPPLGFPRETDSLCPRCVQEVRTAVISGETPLETLMH
                     SHPGEIKAQIFEEDGRVFMTKTCPRHGEFRDVLASDSRFLERVESLFFGRDFRAAEDA
                     HIHRHGTSNIKFGRGAVLTVDLTNRCNMMCNPCFMDANQVGYVHEPTFEDTKAILDRA
                     VSFKPRRQIIILFSGGEPTLSPHFLEACAHAKKVGFYRILAATNGIRFAESEEFCRQA
                     KEAGMHGVYLQFDGVSEEKNKHRGVGNLFDVKLRAIENLAAAGIKVTLVTTIVNTVNN
                     DAIGQIVEFAAKNIDKVQTIAFQPVSFTGRDEDVPDDVRHRQRYTLACMASDLDSQLG
                     GRLKPLRDWFPLSSYSAFTSVMDMLQGAEAPWGWSSCN"
     gene            1642..3663
                     /locus_tag="VD968_04540"
     CDS             1642..3663
                     /locus_tag="VD968_04540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13693.1"
                     /translation="MLAVRPLEPQVETAENLLQNAGFEKDDDRNNLPDAWTVLRGSFA
                     LDPGVKYRDKRGLRVSTTDPEAAPVIYQTVPCKPGGEYYFRAWVRGQGLAGSSPIGAG
                     VFMGWTGKDGKYLGGEYPPGLMGTFNWALVEGKVVIPEEATVIHFGCYLHRGTTGTAW
                     FDAACVEPVRPGPLTVYVLWPHYRGVVVPPIVKPFRAEISLRRMGQWGKRQATVRSEL
                     RDSRGNVVAKAEAVFAPAESVKTLELQVPKSLPLGKYRWWFGLFNVTGQTLLDEGEYG
                     VTASASMPAVHFDEAGNTIVNGSRFFPLGVFMGPTEDEHLARIAAAGFNTVLSYGHGL
                     GEGTAPEQSTRAFFDRAQRHGLRVFYHTLNFYEGTKGFINTGHPSGLDAARYFATQVS
                     DHPALLAYYTADEPHPSLVPKLRDMYNRLVETDFNHPCYQVHHLGNQTDGRVIATHLQ
                     LFYDSHDVVGVDPYVVPCSPLDLVAVWTEGALGSTRRAKPVWVVPQLHDLSAYETTDK
                     APDYCLEPKLREPTFAERRCMAYLALTAGAKGLIFYNYYDLFRTTGEVLLPATDPLVQ
                     RRLGEFHQLGQELRFIIPPLLRWERIPLTFAPATTPVRRISMRMGKTLYFLLANPTKQ
                     QQTVRVALPPGDWREAKARHGGLTVALAGARLDVTLPAVGSGDVVVNAA"
     gene            3749..4582
                     /gene="lpxA"
                     /locus_tag="VD968_04545"
     CDS             3749..4582
                     /gene="lpxA"
                     /locus_tag="VD968_04545"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: protein motif:HMM:NF003657.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HYE13694.1"
                     /translation="MTTPTEIHPTAVVSPRAELARGVRVGPFAVVEDDVLIGEGCEIG
                     THAVVKRFTTMGARNRVFEHACVGGEPQDFKYKGEPSALVIGVDNLIREYVTIHRACG
                     EGSVTRLGSRNFLMAGSHVAHNCEVGDDNTFANGVALAGHVLVEDHVFMSSNVGAHQF
                     VRFGRFAMVGGKSKIVQDVLPFFITDGNPPRVRGINSVGLRRGGFSAEARRTIKRAYQ
                     LLFRARLTLERSLEAISQLDDENAAHLVAFIRASRRGFTRAERDTAGGAEGGLLFKIP
                     G"
     gene            4579..>4965
                     /locus_tag="VD968_04550"
     CDS             4579..>4965
                     /locus_tag="VD968_04550"
                     /inference="COORDINATES: protein motif:HMM:NF016494.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LpxD N-terminal domain-containing protein"
                     /protein_id="HYE13695.1"
                     /translation="MSGEGAGKTVAELAALVGGSVRGDGGALVARVASIERAGEGDVV
                     FVEDEKLFEGARSCGASCVIAPAGAPLEGAPSVIEVARPKLAFALAAVALAPPRRRAP
                     GVHPSARVSEGARLGEGVHVAAAAFVG"
BASE COUNT          792 a         1700 c         1686 g          787 t
ORIGIN      
        1 agttgcacga agaccagccc cagggtgcct ccgcgccctg aagcatgtcc atcacagagg
       61 tgaacgccga ataggacgag agcgggaacc agtcgcgcag gggcttcagg cggccgccga
      121 gctgcgagtc taagtccgag gccatgcagg cgagcgtgta gcgctggcgg tggcgcacgt
      181 cgtcgggaac gtcctcgtcg cgtcccgtga aggagacggg ctggaaggct atggtctgaa
      241 ccttgtcaat gttcttcgcc gcgaactcga ctatctggcc gatggcgtcg ttgttgacgg
      301 tgttgacgat ggtcgtgacc agcgtgacct ttatgccagc ggccgcgagg ttctcgatgg
      361 cgcgcagctt cacgtcgaag aggttgccga cgccgcggtg cttgttcttc tcctccgaca
      421 cgccgtcgaa ctgtagatag acgccgtgca ttccggcctc tttggcctgg cggcagaact
      481 cctcgctctc ggcgaagcgt atgccgttcg tggcggcgag tatgcggtag aagcctacct
      541 tcttggcgtg ggcgcaggct tcgaggaagt ggggcgagag cgttggctcg ccgcccgaga
      601 agaggatgat tatctgccgg cgcggcttga aactaacggc gcggtcgagt atggccttgg
      661 tgtcctcgaa cgtgggctcg tggacgtagc cgacctggtt tgcgtccatg aagcacgggt
      721 tgcacatcat gttgcagcgg ttcgtcaggt caaccgtgag aaccgcgccg cgcccgaact
      781 tgatgttgga ggtgccgtgg cggtgtatgt gcgcgtcctc ggcggcgcgg aagtcgcggc
      841 cgaaaaagag cgactcgacg cgctcgagga agcgcgagtc cgaggcgagc acgtcgcgga
      901 actccccgtg gcgcgggcag gtcttcgtca taaagacccg tccgtcctcc tcgaaaatct
      961 gcgcctttat ctcgccgggg tgcgagtgca tgagcgtctc gagaggcgtc tcgccggaga
     1021 tgaccgccgt gcggacttcc tgcacgcagc gcgggcacaa agaatcggtc tcgcggggga
     1081 agccgagcgg cggcgccgtg cgctcgtagg atttcaggag cggccccggc gcccacttcg
     1141 gccgtatggc ctcgccctcg ggcaggcgcg tgttgacgga ctggaaagcc ttccacgcca
     1201 cgcccgacag gctcgacacg agcctggaag ccttgacacc actgaagcgg cttttctccg
     1261 cctcgccccg gcggaactgg tcgctgaaca agagtctctc tccttaatcg ccgcgggccg
     1321 cggccgtccg catcttgaat cgcgccgcgc gacgccggtc ggcctggcgt gcgcgcaaat
     1381 acttgcagcg cgacatgata gcggcattac ggggggaagg caagggggca ggaccctcgc
     1441 tgccggcctt ctagctcggc gggcggaatg ttattgacag tgcggcccgt cgggcgtata
     1501 agcccgttga agttccgtca ccctttgcga acgcccttcc gcgttcgctg cccgtcctcg
     1561 cgggaaaact ccgaaataac gctcttcccg cggacgagcg ccccccaggc gcccgagcgc
     1621 acccgcccga aaggagaaac tatgctggca gtccgccccc ttgagccgca ggtcgagacg
     1681 gccgagaacc tcttgcagaa cgcggggttc gagaaggacg acgaccgcaa caacctgccc
     1741 gacgcgtgga ctgtgctccg cggaagcttc gcccttgacc cgggtgtgaa gtacagggac
     1801 aagcggggcc tgcgggtgag cacgaccgac cccgaggccg cccccgtcat ataccagacc
     1861 gtcccctgca aacccggcgg tgagtactat ttccgcgcgt gggtcagggg gcaggggctg
     1921 gcgggcagca gccccatcgg ggccggcgtc ttcatgggct ggacgggcaa ggacggcaag
     1981 tacctcggcg gcgagtaccc gccgggcctc atggggactt tcaactgggc gctcgttgag
     2041 ggcaaggtcg tgataccgga ggaggccacc gtcatccact tcggctgcta cctccaccgc
     2101 ggcacgaccg gcacggcctg gttcgacgcg gcgtgcgtcg agcccgtgag gcccggcccg
     2161 ctcaccgttt acgtcctgtg gccccactac cgcggcgtag tcgtcccgcc catcgtcaag
     2221 cccttcaggg ccgaaatctc cctgcggcgc atggggcagt ggggcaagcg gcaggcgacc
     2281 gtgcgctcgg agctgcgcga ctcgcgcggg aacgtggtgg cgaaggccga ggcggtcttc
     2341 gcgccggctg agagcgtcaa gactttagag ttgcaagtgc cgaagagcct gccgctcggc
     2401 aagtaccgct ggtggttcgg cctcttcaac gtgacggggc agacgctgct cgacgagggc
     2461 gagtacggcg tgacggcctc ggcctcgatg cccgccgtcc acttcgacga ggcggggaac
     2521 acaatcgtca acggctcgcg cttcttcccg ctcggcgtct ttatggggcc gaccgaggac
     2581 gagcacctcg cgcgcatcgc ggccgccggc ttcaacaccg tgctctccta cggccacggc
     2641 ctcggcgaag gcacggcccc ggaacagtcc acgcgcgcct tcttcgaccg cgcgcagcgc
     2701 cacggcctgc gcgtcttcta ccacacgctc aacttctacg agggcacgaa ggggttcatc
     2761 aacacaggcc acccctcggg cctcgacgcg gcgcgctact tcgctacgca ggtcagcgac
     2821 cacccggcgc tgctcgccta ctacacggcc gacgagccgc acccctcgct cgtgccgaag
     2881 ctccgggaca tgtacaaccg cctcgtcgag acggacttca accacccctg ctaccaggtg
     2941 caccacctcg gcaaccagac ggacgggcgg gtcatcgcca cccacctgca actcttctac
     3001 gactcgcacg acgttgtggg cgttgaccct tacgtcgtgc cttgctcgcc gttagacctc
     3061 gtggccgtct ggacggaggg ggcgctcggc tcgacgcgca gggccaagcc ggtctgggtc
     3121 gtgccgcaac tccacgacct gagcgcttac gaaacgaccg acaaggcgcc ggactactgc
     3181 ctcgagccca agctgcgcga gccgaccttc gccgagagac gctgcatggc ctacctcgcg
     3241 ctcacggccg gggcgaaggg gctgatcttc tacaactact acgacctgtt caggacgacc
     3301 ggcgaagtct tgctccccgc gacagacccg ctggtgcagc gcaggctggg cgagttccac
     3361 cagctcggcc aagaactgcg gttcatcatc ccgccgctgc tccgctggga gcgcatcccg
     3421 ctcacgttcg ccccggcgac gacgcccgtg cggcggattt cgatgcggat gggcaagacc
     3481 ctctacttcc tcctggcgaa cccgacgaag cagcagcaga cggtgcgcgt cgcgctgccg
     3541 ccgggcgact ggagagaggc gaaggcccgg cacggcggcc ttaccgtcgc gctcgcgggc
     3601 gcgcggctcg acgtgacgct cccggccgta ggctctggcg acgtggtggt gaacgccgct
     3661 tgatgacatt cgcgggcgtc agcccccgcg gccgcgcccc cgggcgtttg cagccggccg
     3721 ctgcgcgcat gtaccatcgt ggccctggat gacgaccccc actgagattc acccgaccgc
     3781 cgtcgtgagc ccccgcgcgg agctagcgcg gggcgtgcgc gtcgggccgt tcgccgtcgt
     3841 cgaagacgac gtgctcatcg gcgagggctg cgagataggc acgcacgccg tcgtcaagcg
     3901 cttcacgacg atgggcgcgc gcaaccgcgt cttcgagcac gcgtgcgtcg gcggcgagcc
     3961 gcaggacttc aaatataagg gcgagcccag cgcgctcgtc atcggcgtcg acaacctcat
     4021 acgcgagtac gtcaccatac accgcgcgtg cggcgagggc agcgtgacgc gactgggcag
     4081 ccgcaacttc ctgatggccg gctctcacgt ggcgcacaac tgcgaggtgg gcgacgacaa
     4141 cacgttcgct aacggcgtgg cgctcgccgg ccacgttctc gtcgaggatc acgtcttcat
     4201 gtcgtcgaac gtgggcgcgc accagttcgt gcgcttcggg cgcttcgcga tggtcggcgg
     4261 aaagtcgaag atagtgcagg acgtgctgcc cttcttcata acggacggca acccgccgcg
     4321 cgtgcgaggc ataaacagcg tcggcctccg tcgcggcggc ttttcggccg aggcgcgccg
     4381 aacgatcaag cgcgcatacc agctcctctt ccgcgcgcgc ctcacgctcg agcgctctct
     4441 cgaagccatc agccagctcg acgacgagaa cgccgcccac ctcgtcgcct tcatacgcgc
     4501 ctcgcgccga ggcttcacgc gcgccgagcg cgacacggcc ggcggcgccg agggcggcct
     4561 cctcttcaaa atccccggat gagcggcgag ggcgcaggaa agacggtcgc tgagcttgcg
     4621 gccctcgtgg gcgggagcgt caggggcgac ggcggcgcgc tcgtcgcccg cgtggcctca
     4681 atcgagcgcg cgggcgaggg cgacgtggtc ttcgtcgagg acgagaagct cttcgagggc
     4741 gcgcgctcct gcggcgcgtc gtgtgtgata gcgccggcgg gcgcgccgct cgaaggcgcg
     4801 ccgagcgtca tcgaggtcgc gaggcccaaa ctcgccttcg ccctcgccgc cgtggcgctc
     4861 gccccgccac ggcggcgcgc gcccggcgtc cacccttcgg cgcgggtctc ggagggcgcg
     4921 cgcctcggcg agggcgttca cgtcgcggcg gcggcgttcg tcggc
//
LOCUS       DASPKR010000158         2703 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_925344, whole genome shotgun sequence.
ACCESSION   DASPKR010000158 DASPKR010000000
VERSION     DASPKR010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2703)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2703
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_925344"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..627)
                     /locus_tag="VD968_04555"
     CDS             complement(<1..627)
                     /locus_tag="VD968_04555"
                     /inference="COORDINATES: protein motif:HMM:NF013112.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13696.1"
                     /translation="MKKVGFISLGCPKNLVDSEVMMGRLKEQGYEITHDAEEADTLVV
                     NTCGFIDAAKKESVEAILEAARLKSEGKCQRLVVAGCLVERYRDELRAEIPEVDAFIG
                     TSQIDDITKAADARANGRQLPVLPLGNQTATYLYDESTPRVLATPSHYAFVKIAEGCD
                     RPCAFCFIPQMRGHFRSRRFGSVVAEAQQLAARGVKELILVAQDSSRYG"
     gene            complement(655..2691)
                     /locus_tag="VD968_04560"
     CDS             complement(655..2691)
                     /locus_tag="VD968_04560"
                     /inference="COORDINATES: protein motif:HMM:NF023418.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3488 and transglutaminase-like
                     domain-containing protein"
                     /protein_id="HYE13697.1"
                     /translation="MEIPDGDGRRARADICGRRSASPLHAALSSIKLLQVKADRDWLF
                     LYLISFFEVLLAAGLGLGPAFLAALALHVFCALLAVVCFELRRSSRLAPESESRLLVA
                     NDYRLLRRAAMGRRGGAGRALSRLPFAAACLFLLIFALALPVFFLAPRASGSGLTMPG
                     GAGSTGYVGFSDRVTLGDIGRLQSSNQLVMRVRVEGPGASQNLRWRGVALDHFDGKRW
                     TQTPARAETKPAYSGDLVRLGTTEDLGRLTTQTFFLEAIDTPVLFAAPRAVAVQGPLP
                     YVRRDGDDGLSSRPHDQERLTYRVFSDTFEPTPERLRADRMPDPRGATPNLRRDVRDY
                     LQLPETLDTRIASHAYMVWRRSGARNVYDAARAIEAHLSQNAYGGDYSYSLDMRATGP
                     DPLSDFLFNVRSGHCEYFSSAMVVMLRTLRIPARVVNGFGEGEYNEASGAYVVRQADA
                     HSWVEVYFPESDAWVTFDPTPVSGRPAGASGGGLAGQLRRYADALDLFWLQYVVAYDK
                     QGQRSLARTIRSQFNQYRFAATRSADGLWAALSSRAPGASGAGGSLLAVVASPLVYGP
                     GAALLGLGALLVLRGKGFKLRGSRARAGSEKPAARVVEFYARMSAALEARGLRRRDDQ
                     TPREFAEAVGSPEVLKITEAYHRVRFGSEKLTGAEAAEVERCLRRVESSAVAIQ"
BASE COUNT          455 a          898 c          951 g          399 t
ORIGIN      
        1 gccgtagcgc gaagagtcct gcgcgacgag tatcaactcc ttgacgcccc gcgcggcgag
       61 ctgctgcgcc tcggctacga cagagccgaa gcggcggctg cggaagtggc cgcgcatctg
      121 cgggatgaag cagaaggcgc aggggcggtc gcacccctcg gctatcttga cgaaggcgta
      181 gtgcgagggc gtggcgagca cgcgcggcgt tgactcgtcg tagaggtagg tggccgtctg
      241 gttgccgagc ggtaggacgg gaagctggcg cccgttagcc ctcgcgtcgg ccgccttcgt
      301 gatgtcgtca atctggctgg tgccgatgaa ggcatcaacc tcgggaatct ccgcgcgcag
      361 ctcgtcgcgg tagcgctcga cgaggcaccc cgccacgacg agccgctgac acttcccttc
      421 ggacttaagg cgggcggctt cgagtatcgc ctcgaccgac tccttcttcg ccgcgtcaat
      481 gaagccgcag gtgttgacga cgagcgtgtc ggcctcctcg gcgtcgtgcg ttatctcgta
      541 gccctgctcc ttgagccgcc ccatcatcac ctcgctgtca acgaggttct tcgggcagcc
      601 cagacttatg aaaccgactt tcttcattaa agactcaatc ccaggaatta ctgactactg
      661 aatggcgacg gccgacgact ccacgcggcg caggcagcgc tcgacttcgg cagcctcggc
      721 cccagttaat ttttccgagc cgaagcgcac gcggtggtag gcttccgtta tcttcaggac
      781 ttccggcgac cctacggctt cggcgaactc gcgcggcgtc tggtcgtcgc gccgccgcag
      841 gccgcgcgct tccagtgccg cgctcatgcg cgcgtaaaac tcgacgacgc gggctgccgg
      901 cttctccgac ccggcgcgtg cgcgcgagcc ccttaactta aagcccttcc cgcgcaggac
      961 gagaagcgcc cccagcccta agagcgccgc gccggggccg taaacgagcg gcgaggcgac
     1021 gacggccaag agcgagccgc ccgcccctga agcgcccggc gcgcgcgacg aaagggccgc
     1081 ccagaggccg tcggccgagc gcgtcgcggc gaagcggtac tggttaaact ggctgcggat
     1141 cgtgcgcgcg agcgagcgtt ggccctgctt atcataagcg acgacgtact gtagccaaaa
     1201 caggtcgagc gcgtctgcgt agcgccgcag ttggcccgcg agcccgcctc ccgacgcgcc
     1261 cgccgggcgc cccgagacgg gcgtcgggtc gaacgtgacc caggcgtccg actcggggaa
     1321 atagacttcc acccacgagt gcgcgtcagc ctgccggacg acgtaggcgc cggacgcctc
     1381 gttgtactcg ccctctccga agccgttgac tacgcgcgcc ggtatccgca gcgtccgcag
     1441 catcaccacc atcgccgacg agaaatactc gcagtggccg gagcgcacgt tgaagaggaa
     1501 gtcggagagc gggtcaggcc ccgtggcgcg catatcgagg gagtacgagt agtcgccgcc
     1561 gtaggcgttc tggctcaggt gcgcttcgat tgcgcgggcc gcgtcataga cgttgcgcgc
     1621 gcccgagcgc cgccagacca tgtaggcgtg gctcgcgatg cgcgtgtcga gcgtctcggg
     1681 cagttgcagg tagtcgcgca cgtcgcgccg caggttcggg gtggcgccgc gcgggtcggg
     1741 catgcggtcc gcgcgcaggc gctcgggcgt cggctcgaac gtgtcggaga agacgcggta
     1801 cgtgagccgc tcctggtcgt gcggtcggga gcttaggccg tcgtcgccgt cgcggcggac
     1861 gtacggcaga ggcccctgca cggcgacggc gcgcggggcg gcgaagagga cgggcgtgtc
     1921 aatggcttcg aggaagaagg tctgagtagt cagtcgcccg aggtcttcgg tcgtgccgag
     1981 gcgcacgagg tcgcccgagt aggcaggctt cgtctccgct cgcgcgggcg tctgcgtcca
     2041 gcgcttgccg tcgaagtggt ctaaggcgac gccgcgccac ctcagattct gcgaagcgcc
     2101 cggcccctcg acgcggacgc gcatgacgag ctggttgctg ctctgaaggc ggcctatgtc
     2161 gccgagcgtg acgcgatccg aaaagcccac gtagccggtc gagcccgcgc cgcccggcat
     2221 agtaagcccg ctgcccgaag cccgcggcgc caggaaaaag accggcagcg cgagcgcgaa
     2281 gatgagcagg aagaggcacg cggcagcgaa gggcaggcgg ctgagcgcgc ggcccgcccc
     2341 tccgcgccgc cccatggccg cgcggcgcag gagcctgtag tcgttggcga cgagcagccg
     2401 gctctcgctc tcgggcgcga gccggctcga acgacgaagc tcgaagcaga cgacggcgag
     2461 cagcgcgcag aagacgtgca gggcgagcgc agcgaggaac gcaggcccga gccccagccc
     2521 cgcggcgagc agcacctcga agaaagatat gagatagagg aagagccagt cgcggtcggc
     2581 cttcacttgc aagagcttta tcgaggagag agcagcgtga agtggactag cgctgcgacg
     2641 cccgcatata tctgcccgcg ctcgccggcc gtcgccgtct ggtatttcca gtcgaggtag
     2701 aag
//
LOCUS       DASPKR010000159         2831 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1055116, whole genome shotgun sequence.
ACCESSION   DASPKR010000159 DASPKR010000000
VERSION     DASPKR010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2831)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2831
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1055116"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2600)
                     /locus_tag="VD968_04565"
     CDS             complement(<1..2600)
                     /locus_tag="VD968_04565"
                     /inference="COORDINATES: protein motif:HMM:NF019605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYE13698.1"
                     /translation="MKLSPTEIYSGRNVFIIGATGFVGKVALSMLLDRFPGVGRVYVT
                     VRARSKEESETRFWNNVITAPPFDPLRERYGGAFDGFVRDKVRIVNGDIGEDRLGFTE
                     EEAEAVAGDIDVLINSAGNVTFNPTLESALRTNVVGTQNVIAFAKRMRRPALVHVSTC
                     FVAGNRSGPVWESDPVIGYFPRREELPGVEFSVEQEIRDCARLSERVKEEARDALQAA
                     RFRESARRRLIEEGRDPDDLDAMGLAVARERKLWTRERLTELGIERAEFWGWPNIYTY
                     TKSLGEQLVAAEAGLVRSIVRPSIVESAMSYPFPGWNEGFTTTAPLIFIALKGQTQIP
                     VNEKLVLDITPVDQVASVMLAVAAETMAREPRLVYQAATGDSNPNTMERIIGLLGLHK
                     RKHFSEKETGFRLVNEIAGRMENKAVTPEWFDMTSTPMVNAAAKKVSGLLDRVRPRWG
                     GGRFTDIVDRAKATVDRVEEVTRETKAAFELFRPFMVENEYVFRADNVRSLFGQLRKD
                     ERHLLVWNPEAFDWYDYWMNVHFPGLKKWVFPTLEEDMRAQPRRAYTYRDLLELFETS
                     SKRFSTRVAMRIERDGRKEQYTYADIHELATRAAAFFASRGVRPADRVLLASHNAPEW
                     GISYFGVLKAGATCVPVDPESSTDEIVNFVRASDATGVILGDRAADEHPGLAERLAEA
                     GLDARIWRYAEIFELTDEKSEIERVSLLPARVTANTVASLIFTSGTTGVPKGVMLSHK
                     NLTNMVSMLSSVFEMDTGDGVLSVLPLYHTFEFSTGFLTPFSRGTQITYLPDLTGEEL
                     ARAIKNGHVTGMVGVPALWELLHRRITSRLHENGEWVGRAADAMMRFNSWLRDRTPLN
                     LGQVLFRPIHA"
BASE COUNT          437 a          924 c          973 g          497 t
ORIGIN      
        1 gcgtgtatgg gccggaagag aacttggccg aggttcaacg gcgtgcggtc gcgaagccaa
       61 ctgttgaagc gcatcatcgc gtcggccgcg cgcccgaccc actcgccgtt ctcgtgcagg
      121 cggctcgtga tgcgccggtg caggagttcc cacagcgccg ggacgccgac catgcccgtg
      181 acgtgcccgt tctttatggc gcgcgcgagc tcctcgcccg tgaggtcggg caggtaagtt
      241 atctgcgtgc cgcggctgaa cggcgtcagg aagccggtcg agaactcgaa cgtgtggtag
      301 agcgggagca cggagagcac accgtcgccc gtgtccatct cgaagaccga cgagagcatg
      361 gacaccatgt tcgtcaggtt cttgtgcgag agcatgaccc ctttgggcac gcccgtcgtc
      421 cccgaggtga agatgagcga ggcgaccgtg ttcgccgtca cgcgcgccgg cagcagcgag
      481 acgcgctcga tctcgctctt ctcgtccgtc agctcgaata tctccgcgta gcgccagatt
      541 cgggcgtcga gcccggcctc ggcgaggcgc tcggccaggc cggggtgctc gtcggctgcc
      601 ctgtcgccga ggatgacgcc cgtggcgtcg ctcgcgcgca cgaagttgac gatctcgtcc
      661 gttgagcttt ccgggtcaac cgggacgcag gtggcgcctg ccttcaggac gccgaagtag
      721 cttatgcccc actcgggcgc gttgtggctc gcgagcagca cgcggtcggc gggcctgacg
      781 ccgcgcgagg cgaagaaggc ggcggcgcgc gtcgcgagct cgtgaatgtc ggcgtaggtg
      841 tactgctcct tgcgcccgtc gcgctcgatg cgcatggcga cgcgcgtgga gaagcgcttc
      901 gacgaagtct cgaacaactc caaaaggtcg cggtaagtgt aggcgcgcct gggctgcgcg
      961 cgcatgtcct cttcgagcgt ggggaagacc cacttcttca ggccggggaa gtggacgttc
     1021 atccagtagt cgtaccagtc gaacgcctcg gggttccaga cgaggaggtg gcgctcgtcc
     1081 ttgcgcaact gcccgaagag cgagcgcacg ttgtcggcgc ggaagacgta ctcgttctcg
     1141 accatgaagg gccggaacag ctcgaaggcg gccttcgtct cgcgcgtcac ctcctccacg
     1201 cggtcaacgg tcgccttcgc gcggtcaacg atgtctgtga agcggccacc gccccagcgg
     1261 gggcgcacgc ggtctagcag gcccgagacc ttcttcgccg cggcgttgac catcggcgtc
     1321 gaggtcatgt cgaaccactc gggcgtgacg gccttgttct ccatccggcc cgcgatctcg
     1381 ttgactagac ggaagcccgt ctccttctcc gagaagtgct tgcgcttgtg gaggccgagg
     1441 agcccgatga tgcgctccat cgtgttcggg ttcgagtcgc ctgtcgccgc ctgatagacg
     1501 aggcgcggct cgcgcgccat cgtctccgcc gcgacggcca gcatgacgga ggcgacctgg
     1561 tcaacgggcg tgatgtcgag tacgagcttc tcgttgacgg gtatctgcgt ctgccccttg
     1621 agcgcgatga agatgagcgg cgccgtcgtc gtgaagccct cgttccagcc ggggaagggg
     1681 taggacatcg ccgactcgac gatggaaggg cggacgatgg agcgcacgag gcccgcctcg
     1741 gccgcgacga gctgttcgcc gagcgacttg gtgtaggtgt agatgttagg ccagccccag
     1801 aactccgcgc gctctatccc aagctcggtc agcctctctc tcgtccacag cttgcgctcg
     1861 cgcgcgacgg ccagccccat cgcgtcgagg tcgtccgggt cgcgcccctc ttcgatgagg
     1921 cgcctgcggg cgctctcgcg gaagcgcgcg gcctgcaggg cgtcgcgcgc ctcttctttg
     1981 acgcgctcgc tcaggcgcgc gcagtcgcgt atctcctgct cgacggagaa ctcgacgccc
     2041 ggcagctcct ctcgccgcgg gaagtagcct atgacggggt cgctctccca cacaggcccg
     2101 gagcggttgc cggcgacgaa gcaggtcgag acgtggacga gggcgggccg ccgcatgcgc
     2161 ttggcgaagg cgatgacgtt ctgcgtgcct acgacgttcg tgcggagcgc gctctcaaga
     2221 gtcgggttga aggtgacgtt gccggcgctg ttgattagaa cgtcaatgtc gcccgcgacg
     2281 gcctcggcct cctcctccgt gaagccgagg cgatcctcgc ctatgtcgcc gttgacgatg
     2341 cgaaccttgt cgcggacgaa gccatcgaac gccccgccgt agcgctcgcg taaggggtcg
     2401 aagggcgggg ccgtgatcac gttgttccag aagcgcgtct cggactcttc cttcgagcgc
     2461 gcgcgcaccg tcacatagac gcgcccgacg ccggggaagc ggtcgagcag catcgagagc
     2521 gcgaccttcc ccacgaagcc agtcgccccg atgatgaaga cgttcctgcc gctgtaaatt
     2581 tccgtcggcg atagcttcat agaatcttcg gtcaggcgcg cacattatcc cccgccggcg
     2641 agcggcttgg gaagcgcgcc gccccgcctc agctcatgtc gcagaggcag atgcagggct
     2701 ggtggagcat ggttatctgg gcggagcggc ccacgtagct gcgggccatc gctatcgcct
     2761 cggtcaaatt gtcggcgcgc tcccatccca ttatggcggg gacgtgcgcg ttctcggcgc
     2821 cggcggctat g
//
LOCUS       DASPKR010000160         2032 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1572544, whole genome shotgun sequence.
ACCESSION   DASPKR010000160 DASPKR010000000
VERSION     DASPKR010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1572544"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1893)
                     /gene="argS"
                     /locus_tag="VD968_04570"
     CDS             complement(<1..1893)
                     /gene="argS"
                     /locus_tag="VD968_04570"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF012952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HYE13699.1"
                     /translation="MEKDERLLNLSELQRRLRLRVSQAAASRFGVELEQVPAEVPPRT
                     ELGDLAFPVAFELAKRVKQATGEKRNPRAIAEELKQELESAEEVARVEVAGAGYLNVF
                     FDRGLLLSKLASGASEAREDESAAAPDSKPKRMVEHTSVNPNKAAHIGHLRNSVIGDT
                     FVRILRASGERVEVHNYIDNTGVQVADVVVGFQHLEGMTLEEVRALDESLTGERPFDY
                     YCWDLYARVGLFYRNGDADAKEDPEKLKLRVETLHALEEGGNPTAELADYVATRIVHA
                     HLRTMGRLGIRYDLLPRESEVLHFLWEHAFERMKASGAIRFEEEGRNRGCWVMPMETH
                     EGTDEHEADKVIVRSNGTVTYTGKDIAYQLWKLGQVDLNFYFKPFRTYPDGHTVWTTT
                     SVKEEAAADAPAFGGGATVYNVIDSRQSYPQDVVRRGVAAVAPQAGEAASVHLSYEMV
                     ALSPAAAEELGLELTAEERARPFVEMSGRRGLGVKADDLIDRLEENERREVEERHPGL
                     AEERKREVAHTLAVSALRYFLLKWTRNSVIVFDFKEAQSTTGESGPYCLYAAVRANSI
                     FRKLRTGELEEGKRLLAPGGGLPAETSARVSEIFEGSTGGELWALTTLAGRLGDALAQ
                     AASAAEP"
BASE COUNT          319 a          693 c          659 g          361 t
ORIGIN      
        1 aggctcggcg gccgaggcgg cctgcgcgag cgcgtcgcct agtcggccag ctagagtcgt
       61 cagcgcccaa agctctccgc ccgtcgagcc ctcgaaaatt tccgagacgc gcgcggacgt
      121 ctccgccggc aagccgcccc cgggcgcaag caggcgcttc ccctcttcca actcgccggt
      181 tcgcaacttg cgaaagattg agttggcgcg cacggccgcg tagaggcagt aaggcccgga
      241 ctcgccggtg gttgactgcg cctccttgaa gtcgaagacg atgacggaat tgcgcgtcca
      301 cttcagaagg aagtagcgca gggcgcttac ggcgagcgtg tgcgcgacct cgcgcttgcg
      361 ctcttcggcc aagccggggt ggcgctcctc gacctccctg cgctcgttct cttcgagccg
      421 gtcaatcagg tcgtcggcct tgacgcccag gccgcgccgc ccgctcatct cgacgaaggg
      481 ccgagccctc tcctcggccg taagctcaag gccaagctcc tcggccgcgg cgggcgagag
      541 cgccaccatc tcgtatgaga ggtgcacgct cgcagcctcg cctgcctgcg gggcgacggc
      601 agccacgccg cgcctgacaa cgtcctgcgg gtaggactgc cgcgagtcaa tgacgttata
      661 gacggtcgcg ccgccgccga acgcgggcgc gtcggccgcg gcctcttctt tgacgctcgt
      721 cgtagtccag accgtgtggc cgtcggggta ggtgcggaaa ggcttgaaat agaagttcag
      781 gtcaacctgc ccgagcttcc atagctggta ggcgatgtct ttgccggtgt aggtgacggt
      841 gccgttcgag cggacgatta ccttgtcggc ctcgtgctcg tcggtgcctt cgtgcgtctc
      901 catcggcatc acccagcagc cgcggttgcg cccctcctcc tcgaagcgta tcgcccccga
      961 cgccttcatg cgctcgaagg cgtgctccca gaggaagtgc agcacttcag actcgcgcgg
     1021 cagaaggtcg taacggatgc cgagccgtcc catcgtcctg aggtgggcgt ggacgatgcg
     1081 cgtggcgacg taatcggcaa gctccgccgt ggggttcccg ccctcttcga gcgcgtgcag
     1141 ggtctcgacc ctgagcttca gcttctcagg gtcttccttc gcgtccgcgt cgccgttgcg
     1201 atagaagagg ccgacgcgcg cgtacaggtc ccagcagtaa tagtcgaacg gccgctcgcc
     1261 ggtgagcgac tcgtcgaggg cgcgcacctc ttcgagcgtc atgccttcga ggtgctggaa
     1321 gcctacgaca acgtctgcga cctgcacgcc cgtgttgtca atgtagttgt ggacttcgac
     1381 gcgctcgccc gaggcgcgga gaatgcggac gaaggtgtcg cctatgacgg agttgcggag
     1441 gtggccgatg tgagcggcct tgttcgggtt gacgctcgtg tgctcgacca tgcgcttcgg
     1501 cttcgagtcg ggggcggcag cgctttcatc ctcgcgcgcc tcgctcgcgc ccgaggccag
     1561 cttagagagc agaagcccgc ggtcgaagaa gacgttcagg tagcccgcgc ccgcgacctc
     1621 cacgcgcgct acctcttcgg ccgactcaag ctcctgcttc agctcctcag caatagcgcg
     1681 cgggttgcgc ttctcgcccg tcgcctgctt gacgcgcttc gccagttcga aagcgactgg
     1741 gaaggcaagg tcgccgagct ccgtgcgcgg aggcacctct gccgggactt gctcaagctc
     1801 gacgccgaac cggctcgcgg ccgcttgact gacgcgcagg cgcagccttc tctgcaactc
     1861 ggacaggttc aagaggcgtt cgtccttttc cacgaaagaa taccgaaaac gcggcggccc
     1921 gaaggcccga aagtatagcg cagcgaaacg gagtcgcgcc aaccgagccc gcccggccgc
     1981 cctgcttgac actcgccagc cgcgctctgc taccatccct gcgattcgtg gc
//
LOCUS       DASPKR010000161         5648 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_796212, whole genome shotgun sequence.
ACCESSION   DASPKR010000161 DASPKR010000000
VERSION     DASPKR010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5648)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5648
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_796212"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..1480)
                     /locus_tag="VD968_04575"
     CDS             complement(158..1480)
                     /locus_tag="VD968_04575"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYE13700.1"
                     /translation="MRVLSITAGAAQMYCGSCLRDNALASEMIRRGHDVVLVPLYTPT
                     LTDEPNVSRGRVFFGGISVYLEQHSRLFRHTPRWLDRLWDSELALRLATRRSIATNPR
                     MLGELTVSMLRGEEGNQRKELGKMLDWLRAEPPFDLITLPYTLLIGLAKPLREALGRP
                     VLYTLQGEDLFLEGLEEPYRRESLRLIREAVSEVDAFISVSDYYAGFMRDYLDIPAEK
                     IRVVPLGINLRGYEPRAARPEGLPFTVGYFARVAPEKGLHVLAEAYRVAREGGLTDAR
                     LEAAGYMGAEHEGYLKDVERRMKGWGLGDEFSYRGALDREGKIEFLRGLDVLSVPATY
                     DEPKGIFLLEAMACGVPVVQPRRGAFTEIVERTGGGLLVEPDDPAALADGLKRLARDA
                     ALSGRLGADGRDGVREHYNIGLMAERTLEVYESLLGLQPERGRQVAHA"
     gene            complement(1494..2924)
                     /locus_tag="VD968_04580"
     CDS             complement(1494..2924)
                     /locus_tag="VD968_04580"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYE13701.1"
                     /translation="MLHIPLLRKGEPYRSLEVARAAHYRTREPFVEISQANAGLVRRD
                     LLGQSEARAALAKFSGEELLEICSRAAEHFVGGELPLGDSAQGPEDYVRQVSATTGLP
                     HVLVRRNMEKIRGVLAGMGGVLRGLTRGLDLRVLDRGFGEAGAQVLSYYPRAQALGVV
                     LPSNSPAVHALWTPAVALKTPLVLKPGAAEPWTPYRLVEAFARAGAPREAFSYYPTDH
                     AGAAEILRACGRGMIFGDASSVGAWKDDPRVEIHGPGYSKIYIGEDCVDEWESHLDVI
                     AASVIENGGRSCVNASGVWAPRHAAEIAEALAERLARFVPRAEDDPEAILAPFADARV
                     AERINDSVESALRAEAGARDVTAERRGGPRLVTWQGCSYLLPTVVLCESAEHPLANRE
                     FLFPFASVVPVREEDVPEAFGPSLVVTAITRDESLIRRLLESPDVGRLNVGAVPTSVV
                     RWDQPHEGNLFEHLYARRAFYSAAAV"
     gene            complement(2936..4024)
                     /locus_tag="VD968_04585"
     CDS             complement(2936..4024)
                     /locus_tag="VD968_04585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13702.1"
                     /translation="MAAKEETLETRIRGAREELDAWVREVVAWHFDPETGSPFWLERA
                     ARLGFDPRREVQTYDDLSRFGFFEDEWLRGGPVRRWVPRGLAHRPVYVFETGGSTGVP
                     KSRISIEDFRIDYELFSRTLPDEFFPPGSDWLMLGPSGPRRLRLAVEHLAQHRGGICF
                     TVDLDPRWVIKLIKTGQRQQAEEYKRHVIEQGLTVLRAHENVRCLFTTPKLLEALCEK
                     ISLKKAGITGVFCGGTEMTPQFHRFAVEELLEGAYFAATYGNTLMGLAVHKPRAEGDP
                     FDIIYYPPAPRAVIEVVDPDEPSRVVGYGETGRVRLTTLTKEFFMPRFLERDEAEREP
                     PCDPYPWDGVRNVRPFSRLQTTVVEGVY"
     gene            complement(4178..4786)
                     /locus_tag="VD968_04590"
     CDS             complement(4178..4786)
                     /locus_tag="VD968_04590"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HYE13703.1"
                     /translation="MGFRVRGKKNSDARAAPDWSREELLSAAARGRASDVERLLAAGA
                     DVEARSAAHNYTALVLAAAGRHTSVVEILLGGGADVDAKDVGGKTSLIHAATVGDEAV
                     VEALLNAGADVNARDSRGLTALMWAVSAGHAGVVKVLLEAGADAGAEDECGRTAFDHV
                     RGSGGLNAGFGMWLFSSRSRRPDKEMTRLLDAYRAESAEDGA"
     gene            complement(4895..>5648)
                     /locus_tag="VD968_04595"
     CDS             complement(4895..>5648)
                     /locus_tag="VD968_04595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13704.1"
                     /translation="APSAFGQAEYSDSYSVDGSGYSHDPGSDTLVLTEGAPDPVVVGV
                     GVAEDAYDSGTYETSTSTVLTSPDGSSASSTSDGWYYARAEAAMGMNVETAVEGEYKV
                     ESQHTYYRVQEEQPCYDYSMPCYQAKARPDSLFGAMFMPASYTPLRASAARPRAYPYY
                     FTIIRFTRFFFFLSTVYTGYQNSGFIGCGGNTPWAYLLWCADTRNCGFRARICAGFGA
                     DFLQGTALRISYYWGNVCITRFRYIYHPPRCS"
BASE COUNT          902 a         1913 c         1927 g          906 t
ORIGIN      
        1 tgccgtcgcc gttgtcggcc ccattatcga gacggcgtcg ccgcgcgaga gctttaagct
       61 aacacccgac agtatcagca gagcgccccg cggcgccctg tactccttcg taagattgct
      121 gacttccagc actgggttag aaacgggcgg cggcgcttta tgcgtgcgcg acctggcgac
      181 cgcgctcagg ttggaggccg aggaggcttt catagacttc gagcgtacgc tcggccatca
      241 gccctatgtt gtagtgctcg cgcacgccgt cgcggccgtc ggcgccgagg cggccggaga
      301 gcgccgcgtc gcgcgcgagg cgcttgaggc cgtcggccag cgcggccggg tcgtcgggct
      361 cgacgaggag gccgccgccc gtgcgctcga caatctcggt gaaggcgccg cggcgtggct
      421 gcacgacggg gacgccgcac gccatcgctt cgagcaggaa gatgcctttc ggctcgtcgt
      481 aggtcgcggg gacggagagc acgtcgaggc cgcgcaggaa ctctatcttc ccttcccggt
      541 cgagcgcgcc gcggtagctg aattcgtcgc ccaagcccca acccttcatg cgccgctcca
      601 cgtccttcaa atacccttcg tgctcggcgc ccatgtagcc ggcggcttcg agccgcgcgt
      661 cggtcaagcc tccctcgcgc gccacacggt aggcttcggc cagcacgtgc agccccttct
      721 cgggcgctac gcgcgcgaag tagccgacgg tgaatggcag cccctcgggg cgggcggcgc
      781 gcggctcgta gccgcgcagg tttatgccga gcggcacgac gcgaatcttc tcggcgggga
      841 tgtcgagata gtcgcgcatg aagccggcgt agtaatcgct cacggagatg aaggcgtcaa
      901 cttcgctcac ggcctcgcgt atgagccgga gcgactctcg ccggtatggc tcctcgaggc
      961 cctcgagaaa gaggtcttcg ccctgaagag tgtagaggac ggggcggccg agcgcctcgc
     1021 gcagaggctt ggcgaggccg atgaggagcg tgtagggtag ggttatcaag tcgaagggcg
     1081 gctccgcgcg cagccagtcg agcatcttcc cgagttcctt gcgctggttc ccttcctcgc
     1141 cgcggagcat cgagacggtc agctcgccga gcatccgggg gttcgtggcg attgagcggc
     1201 gggtggcgag gcggagcgcg agctccgagt cccagaggcg gtctagccag cgcggcgtat
     1261 ggcggaacag ccgcgagtgc tgttcgagat agacgcttat gccgccgaag aagacgcggc
     1321 cgcggctcac gttcggctcg tccgtcagcg tcggcgtgta gagcgggacg agcacaacgt
     1381 cgtggccgcg ccttatcatc tcggacgcca aggcgttatc gcgcaggcag ctcccgcagt
     1441 acatctgcgc cgcgccggcc gtgattgaca ggactctcat gcgtgaaagc gaatcagacg
     1501 gccgcggcgc tgtagaaggc gcggcgcgcg tataggtgct cgaacaggtt gccctcgtgc
     1561 ggctgatccc agcgcacgac gctcgtcggc accgcgccga cgttcaagcg ccccacgtcg
     1621 ggcgactcga gcagccggcg tatcaaactc tcgtcgcgcg ttatcgccgt gaccacgagg
     1681 ctcgggccga acgcctcggg aacgtcctcc tccctcacgg ggacgacgct cgcgaacggg
     1741 aagaggaact cgcggttggc gagcgggtgc tcggccgact cgcaaagcac gaccgtcggc
     1801 aggaggtacg agcagccctg ccacgtgacg aggcgcgggc ctccgcgccg ttcggccgtc
     1861 acgtcgcgcg cgcccgcctc cgcgcgcagg gccgactcga ccgagtcgtt gatgcgctcg
     1921 gccacgcgcg cgtctgcgaa gggcgcgagt atcgcttcgg ggtcgtcctc ggcgcgaggc
     1981 acgaagcggg ccaggcgctc ggcgagagcc tccgcaatct ccgccgcgtg ccggggcgcc
     2041 cacacgcccg acgcgttcac gcaagagcgc ccgccgttct ctatgaccga ggcggcgata
     2101 acgtcgaggt ggctctccca ttcgtcaacg cagtcctcgc cgatataaat cttgctgtag
     2161 ccggggccgt gaatctctac gcgcgggtcg tccttccagg cgcctaccga ggaggcgtcg
     2221 ccgaagatca tcccgcgccc gcaggcgcgc aagatttcgg cggcgcccgc gtggtcggtc
     2281 gggtagtagg agaacgcctc gcgcggcgcg cccgcccgcg cgaaagcctc gacgaggcgg
     2341 tagggcgtcc acggctcggc cgcgccgggc ttaaggacga gcggggtctt taaagcgact
     2401 gcgggcgtcc agagcgcgtg aacggcgggc gagttgctgg gcagcacgac gccgagcgcc
     2461 tgcgcgcgcg ggtagtagct caggacttgc gcgcccgcct cgccgaagcc gcggtcgagc
     2521 acgcgcaggt ctaagccccg agtcaagccg cgcagcacgc cccccatgcc ggccagcacg
     2581 cctcttatct tctccatgtt cctgcgcacg agcacgtgcg gcagccccgt cgtcgccgac
     2641 acctgacgga cgtaatcctc cggcccctga gcggagtcac cgagcggcag ctcaccgcct
     2701 acgaagtgct cggccgcgcg cgagcagatt tcgagaagct cctcgcccga gaatttagcg
     2761 agcgcggcgc gcgcctccga ctggcccagg aggtctctcc gcacgagccc ggcgttcgcc
     2821 tgacttatct cgacgaaagg ctcgcgcgtc cggtagtgag ccgcgcgcgc gacttccaag
     2881 ctcctgtacg gctcgccctt gcgtaagagt gggatgtgca gcataagcga cggccttaat
     2941 agactccttc gacgacggtc gtttgcaggc gcgagaaggg acggacgttg cggacgccgt
     3001 cccacgggta cgggtcgcag ggcggctcgc gctctgcctc gtcgcgctcg aggaagcgcg
     3061 gcatgaagaa ctctttcgtg agtgtcgtga gcctcacgcg gcccgtctcg ccgtagccga
     3121 ccacgcgcga gggctcgtcc gggtcaacca cttcgatgac ggcgcgcggg gcgggcgggt
     3181 agtagatgat gtcgaagggg tcgccctcgg cgcgaggctt gtggacggcg agccccatca
     3241 aagtgttgcc gtaggtcgcg gcgaagtagg cgccttcgag aagctcctcg acggcgaagc
     3301 ggtggaactg cggcgtcatc tcagttccgc cgcagaagac gccggtgatg ccggccttct
     3361 tcagggagat tttctcgcag agcgcttcga gcagtttcgg cgtcgtgaac aggcagcgaa
     3421 cgttctcgtg cgcgcgcaag accgtcagcc cctgctcgat cacgtggcgc ttgtactcct
     3481 cggcctgctg gcgctggccc gtcttgatga gcttgatgac ccagcgcggg tcgaggtcaa
     3541 cggtgaagca gatgccgccg cggtgctgcg ccaggtgctc gacggccagg cgcaggcggc
     3601 gcggcccgga ggggccgagc atcagccagt cggagccggg ggggaagaac tcgtcgggga
     3661 gcgtgcggct gaatagttcg tagtctatgc ggaagtcctc gatgctgatg cgcgacttcg
     3721 gcacgcccgt cgagccgccc gtctcgaaga cgtaaacggg gcgatgggcc aggccccgtg
     3781 gcacccagcg gcggacgggg ccgccgcgca gccactcgtc ctcgaagaag ccgaagcgcg
     3841 agaggtcgtc gtaagtctga acctcccggc gcgggtcgaa gccgagccgg gcggcgcgct
     3901 cgagccagaa gggcgagccc gtctcggggt cgaagtgcca cgcgacgacc tcgcgcaccc
     3961 acgcgtccaa ctcctcgcgc gcgccccgga ttcgcgtctc aagagtctct tctttagccg
     4021 ccatctcgcc gacgagatta cccgcacgcg gtctcggcgc acaacccgta aacggcaaaa
     4081 actggcggcc ggttttgtaa aaaggtattt acaacgggag gcgagttgcc ggcggtttgg
     4141 ccgcgtcggg ccggccgtag aagcgccgcg aggggcgtta ggcgccgtcc tccgcgcttt
     4201 ccgccctgta ggcgtctagc agccgggtca tctctttatc gggccggcgc gagcgggagc
     4261 taaatagcca catcccgaac ccggcgttga ggcctccact gccccggacg tggtcgaatg
     4321 ccgtgcgacc gcactcgtct tcggcgccgg catcggcgcc ggcctccagc agcactttaa
     4381 cgacccccgc gtgcccagcc gaaacggccc acattaaggc cgtcagcccg cggctgtccc
     4441 tggcgttcac gtcagcgccg gcgttcagta acgcctcgac gaccgcctcg tccccgacgg
     4501 tcgcggcgtg gatcaggctg gtcttccccc ccacgtcctt cgcgtcaacg tcggcgcccc
     4561 cgcctaacag aatctccacg acgctggtat ggcgcccggc cgcggccagc accaaagcgg
     4621 tgtagttatg ggccgcgctt ctggcttcca cgtcggcgcc cgccgcgagt aagcgttcca
     4681 cgtcgcttgc gcgcccgcgc gccgcagccg acagcagctc ttcacggctc caatcggggg
     4741 cggcgcgggc gtcgctattt tttttacccc tcaccctaaa gcccataacc gcctcccggc
     4801 cgggggcgcc ccctcgggtt taaagtataa cggcctgacg gccgggccgc gtcaggccgt
     4861 tatacgccgc gccgcttctt acgttcccgg ccccctaaga gcatctgggc gggtggtata
     4921 tgtacctgaa gcgtgtgatg cacacgttgc cccagtagta actaatccgc agtgccgtgc
     4981 cttgcaggaa atcggccccg aagccggcac atatcctcgc acggaagccg cagtttctgg
     5041 tgtccgcgca ccagagcagg tacgcccacg gggtgttccc cccgcacccg atgaaaccgg
     5101 agttctgata cccggtgtag acggtgctga ggaagaagaa gaaccgcgtg aaccttatta
     5161 tggtgaagta gtaggggtag gccctcggcc tggcggccga cgcccggagg ggcgtgtacg
     5221 aggcgggcat gaacatggcg ccgaacaggc tgtccgggcg ggccttcgcc tggtaacacg
     5281 gcatgctgta gtcgtagcac ggctgctctt cctgcacccg gtagtacgtg tgctgagact
     5341 cgaccttgta ctccccctcg acggcggtct ccacgttcat ccccatggcg gcctcggcgc
     5401 gcgcgtaata ccagccgtct gaggtggacg acgcgctgct gccgtccggg ctcgtcagga
     5461 ccgtgctggt cgaagtctca tacgtgccgc tgtcgtaggc gtcctccgca accccgacgc
     5521 ccaccaccac ggggtcgggg gcgccctccg tcagaacgag cgtgtcggag ccggggtcgt
     5581 gcgagtaccc ggagccgtcc acagagtaag agtccgaata ctcggcctga ccgaaggccg
     5641 aaggcgcg
//
LOCUS       DASPKR010000162         5091 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_667033, whole genome shotgun sequence.
ACCESSION   DASPKR010000162 DASPKR010000000
VERSION     DASPKR010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5091)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5091
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_667033"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            365..514
                     /locus_tag="VD968_04600"
     CDS             365..514
                     /locus_tag="VD968_04600"
                     /inference="COORDINATES: protein motif:HMM:NF039824.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo0937 family membrane protein"
                     /protein_id="HYE13705.1"
                     /translation="MLWTILVVLLVLWLLGLVGGVGGGLIHLLLVIAAVILVINLLSG
                     RRPVV"
     gene            complement(661..1578)
                     /locus_tag="VD968_04605"
     CDS             complement(661..1578)
                     /locus_tag="VD968_04605"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYE13706.1"
                     /translation="MSKPPERAAEGREQPAAYLYMLSSSLAFATMGAMSHLAGERSDW
                     QLVAVARTSVAFVLSALLAVSAGVRPVLFGPGVLWVRSLAGSAGVLCAFYALTHLPIS
                     TALTLSNTVPLWVTLLAWPTLGQKPSASVWLAVAVGLAGIVLIQRPDLTGDRLAALLA
                     LGNAACTAVAMIGLNRLGRLDARAVVTHFSGVSTVATLAFLLLPGQRIDYGALGGAGT
                     AALLAGVGIAGTLGQLAMTKAFALGQPARVSVVGLMQIVFALGFDLVIWHRRLDALTV
                     AGIALVAVPSAWLMLHNPLKKSTPIHTTA"
     gene            complement(1649..1722)
                     /locus_tag="VD968_04610"
     tRNA            complement(1649..1722)
                     /locus_tag="VD968_04610"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1686..1688),aa:Ile,seq:cat)
     gene            complement(1803..2351)
                     /locus_tag="VD968_04615"
     CDS             complement(1803..2351)
                     /locus_tag="VD968_04615"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HYE13707.1"
                     /translation="MIFNSVGEIFDEIDAARDRLVRSVEGLTAEQQNFAPEPGRWSAA
                     EILEHLAATENGVVRLCRATLNKLEGAGKLRAEGQPFAPVTIEEHIERSRRERYKAPE
                     QIAPGGGVPVADSLARLAESRETLRSLRPRIETADCAGTYFPHPAFGPLNLYQWLAFV
                     GAHETRHLAQIEALKEAMQARN"
     gene            complement(2378..3637)
                     /locus_tag="VD968_04620"
     CDS             complement(2378..3637)
                     /locus_tag="VD968_04620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13708.1"
                     /translation="MLRERLVTVGRVRALASALAACVLAAACGGGGVTDLGLSARPRS
                     LRDVPAARLAFRFEPDVSEDALPERLKKDEAEEPLAAVRTAFETARPDDALMRTVLDP
                     EGQRALALYGTSGTDNDFRIDLYSATGQFIRNILPADLTGVFPAEAAWSPGGTQILFA
                     GIRNPAATASPTPFDAAPVPPDLSRPPESDPSAALPTPTPTAAPLIAPVAAFRTEQIY
                     VGDRDGNNLRPLTKNEGLIYFKLAWSPDGQQIAALACREDEWLARRTEGKLPAGRPRI
                     VTLDGVERLLDDRLTEVKPVWSPDGSKVATAFDYDVAVYDAASGAPTAGQMSVGEALR
                     AASVEYDLRVSRKGGAQAEGAAPPPAQTDGVLLSFNPVVRLEWVEPATLLAQTAFVRF
                     YSNDPLPTVKYTRWHVLRIYPQAAVLQ"
     gene            complement(3699..4481)
                     /locus_tag="VD968_04625"
     CDS             complement(3699..4481)
                     /locus_tag="VD968_04625"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYE13709.1"
                     /translation="MAEGEYRHIRFRVEDRVARVTLARPPLNILDIAMMREIDAALTD
                     CMGRRDVVAVVFDASKGSRAFSAGVSIEEHREETIYQMLESFHAIFRTMEQMAKPALA
                     VVDGAALGGGCELVAGCDVVISSSRARYGQPEIKLGVFPPVAAVLLPRIIGERRAREL
                     ILTGELFDAQEALRLGLVSYVVEADQLETKLQEILSRLRELSAPALEMARRALDVARG
                     RPFLEALSKAEDIYLNELMKTEDAREGVTAFIEKRRPDWRNR"
     gene            complement(4546..>5091)
                     /locus_tag="VD968_04630"
     CDS             complement(4546..>5091)
                     /locus_tag="VD968_04630"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYE13710.1"
                     /translation="AGAELAAGEAASELFGPRGDTLVRALTVVALLSSVNALLLIATR
                     VPFAMGRDRLFPPRAVGVNEGGTPAVALAASALVALLFVAGGGFGQVIAVLAFFFVLN
                     YAVSFAAVFALRRSAPDAQRPWRALGHPWTTALALAGSVGFMLSAFLSSTRDSLIALA
                     LLALSYPAYLLVRRALGASVL"
BASE COUNT          803 a         1658 c         1850 g          780 t
ORIGIN      
        1 ttgagccctg cgcgcgaagc ccgtgcctat gaccccgatt ctcacgacgc ctccggcgcc
       61 caagcgaagc ccccgaacga gtcagtttga atgaacgacc ttagcgcgcg aacatactgt
      121 atgggtgaag gaaaggcaaa catacggggc cgcgagtgac aggattgggt acggcgaagt
      181 cgagggcgct gatgttgaag attcaagagg gcgaggtcgc cctacggggt caaaacaagc
      241 catttcagcg gcttaggggc gcgcccgggc gccgccgtgc gtagatggca cggccgttgc
      301 cctagcgtct gtcacgcaag gcaagggatt aaacgggtag gcagataaac gggaggaatg
      361 aaagatgctt tggacgattc tggtggtgct gcttgtgctc tggcttctcg ggttggtcgg
      421 cggcgtgggc ggcgggctga ttcacctgct gcttgtcatc gcggccgtca tcctcgtcat
      481 taaccttctg tcgggccgca ggccggtggt ctaaccgcgc gcgactcttt cgttgaacgc
      541 ttagcttaag gcgtcggccc gcggcgggcc gatttgatga gggaccgggg cgacggcgcc
      601 tctgttccgt ccacaacgac gacggcgctc cttcttcgct gaggggcgcc gttctatttt
      661 tcatgccgtc gtgtgaatcg gcgtgctctt cttcaaaggg ttgtggagca taagccaggc
      721 cgaagggact gcgacgaggg cgatgccggc gacggtcagc gcgtccaggc ggcggtgcca
      781 gatgaccagg tcgaagccga gcgcgaagac tatttgcatc agccccacga ccgagacgcg
      841 cgcgggctgc cccagcgcga acgccttagt catcgccaac tgcccgagcg tgcctgctat
      901 ccctacgccg gccagcagcg ccgccgtccc cgcgccgccg agcgcgccgt agtctatgcg
      961 ctgccccggc agcagcagga aggctagcgt ggcgacggtc gagacgcccg agaagtgcgt
     1021 gacgacggcg cgcgcgtcga gacgcccgag cctgttcagg ccgatcatag cgaccgccgt
     1081 gcaggcggcg ttgccgagcg cgaggagcgc ggccagccgg tcgcccgtca agtccggccg
     1141 ctgtatgagc actatccctg ccaacccgac ggcgacggcg agccacaccg aagcgctcgg
     1201 cttctgcccg agcgtaggcc acgcgagcag cgtgacccag agcggcacag tgttcgataa
     1261 cgtcagggcg gtcgagattg gcaggtgcgt gagggcatag aaggcgcaca gcacgcccgc
     1321 gctccccgcg aggctgcgaa cccagagcac tccggggccg aacaggactg gccgcacgcc
     1381 cgccgagacg gcgagcagcg cggagagcac gaaggcgacg gaggtgcgcg cgacggcgac
     1441 gagttgccag tcgctgcgct cgcccgcgag gtggctcatc gcgcccatcg tcgcgaaggc
     1501 gagcgagctc gacagcatgt aaaggtaagc ggcgggctgc tcccgcccct ccgccgctct
     1561 ctcgggaggc ttcgacatca gacgggcgag agcttaacac cccgcgcccg gagtgtcagc
     1621 cccgcccttt tggcgtgttc gattgggatg ccctctgtag gactcgaacc tacaaccaac
     1681 ggattatgag tccgctgctc tgaccgattg agctaagagg gcgtgagcat tacgcgactt
     1741 caagagatta taaagtccgc gtggcggggc cgcaagcgcg ccccgccgtc cggtcttacg
     1801 gctcagtttc gcgcctgcat ggcctccttg agcgcctcta tctgcgcgag gtggcgcgtc
     1861 tcgtgggcgc cgacgaaggc gagccactgg tagaggttca gggggccgaa ggccgggtgc
     1921 gggaagtacg tgccggcgca gtcggcggtc tctatgcggg ggcggaggga gcgcagggtt
     1981 tcgcgcgact cggcgaggcg agcgagcgaa tcggcgacgg ggacgccgcc gccgggcgcg
     2041 atctgctcgg gggccttgta gcgctcgcgg cggctgcgct cgatgtgctc ttcgatggtg
     2101 acgggcgcga agggctggcc ttctgcgcgg agtttgcccg cgccttcgag cttgttgagg
     2161 gtcgctcgac agaggcgcac gacgccgttc tcggtggcgg ccaggtgctc gagaatctcg
     2221 gcggcagacc agcggcccgg ctccggcgcg aagttctgct gctccgccgt cagcccctcg
     2281 acgctgcgga cgaggcggtc gcgcgccgcg tctatctcgt cgaaaatctc gccgacgctg
     2341 ttgaaaatca tcgtgtgggg aactcctttc tgaagtctca ttgcaggacg gcggcctgcg
     2401 ggtagatgcg cagcacgtgc cagcgcgtgt acttgacggt tggcagcggg tcgttgctgt
     2461 agaagcgcac gaaggccgtc tgcgccagga gcgtcgccgg ctcgacccat tcgagccgca
     2521 cgacggggtt gaaggagagc agcacgccgt ccgtctgcgc cgggggcggc gcggcgccct
     2581 cggcctgcgc cccgcccttc ctggagacgc ggaggtcgta ctcgaccgac gccgcgcgca
     2641 gtgcttcgcc cacgctcatc tgcccggcgg tgggcgcgcc gctggccgcg tcatagacgg
     2701 ccacgtcgta gtcgaaggcg gtcgcgacct tcgagccgtc gggcgaccag acgggcttga
     2761 cttcggtcag tcggtcgtcg agcaggcgct ccacgccgtc gagcgtgacg atgcgtggcc
     2821 gccccgctgg cagtttgcct tccgtgcggc gcgcgagcca ctcgtcctcg cggcaggcga
     2881 gcgccgctat ctgctgcccg tccggcgacc acgcgagctt gaagtagatg agcccctcgt
     2941 ttttcgttag cggccggagg ttgttgccgt cgcggtcgcc cacgtaaatc tgctccgtcc
     3001 tgaaggcggc gacgggcgcg atgagcggcg cggccgtggg cgtaggggtc ggcagcgcgg
     3061 ccgacggatc gctctcgggc gggcgcgaaa ggtctggcgg gacgggcgcg gcgtcgaagg
     3121 gagtcgggct ggccgtcgcg gcagggttgc gtatgccggc gaagagtatc tgcgtgccgc
     3181 cgggcgacca cgcggcctcg gcggggaata cgccggtcag gtctgcgggc aggatgtttc
     3241 ggatgaactg ccccgtcgcg gagtagaggt caatgcggaa gtcgttgtcg gtgccgctcg
     3301 tgccgtagag cgcgagcgcg cgctgacctt cggggtcgag cacggtgcgc atgagcgcgt
     3361 cgtcgggccg agccgtctcg aaggcggtgc ggacggccgc gagcggctcc tcggcctcgt
     3421 cctttttaag ccgctcgggc agggcgtctt cgctcacgtc cggctcgaag cggaaggcga
     3481 ggcgggcggc cggcacgtcg cgcagagagc ggggccgcgc gctcaacccg aggtctgtga
     3541 ctccgccgcc gccgcacgcc gcggccagca cgcacgcggc gagcgccgac gccagcgcgc
     3601 gcacgcgccc cactgtcacg agccgctccc ttaacattct cttcctcaaa cgcagatgat
     3661 aggtacggct cggcgggcgt gtcaacgagg gctgcgcgtc agcggttgcg ccagtcgggg
     3721 cggcgcttct cgatgaaggc cgtgacgccc tcgcgcgcgt cctcggtctt catcagctcg
     3781 ttcaggtata tgtcttcggc cttcgagagg gcttcgagga agggtcggcc gcgcgcgacg
     3841 tcgagggcgc ggcgggccat ctccagggcg ggcgccgaca gctcccgcag gcgcgagagt
     3901 atctcctgaa gcttcgtctc aagctggtcg gcctcgacga cgtagctaac gagcccgagc
     3961 cgcagcgcct cttgagcgtc gaacagctcg cccgtaagga tcagctcgcg cgcgcggcgc
     4021 tcgcctatga ttcgagggag cagcacggcc gcgacgggcg ggaagacgcc gagctttatc
     4081 tcgggctggc cgtagcgcgc gcgcgagctc gagatgacca cgtcgcagcc ggcgaccagc
     4141 tcgcagccgc cgccgagggc cgcgccgtca acgacggcca gcgcgggctt cgccatctgc
     4201 tccatcgtgc ggaagatggc gtggaaggat tcgagcatct ggtagatggt ctcctccctg
     4261 tgctcctcga tggagacgcc ggcgctgaag gcgcgcgagc ccttcgaggc gtcgaagacg
     4321 acggcgacca cgtcgcgccg gcccatgcag tccgtgagcg ccgcgtctat ctcgcgcatc
     4381 atggcgatgt cgagtatgtt gagcggcggg cgcgcgagcg tcacgcgcgc cacgcggtct
     4441 tccacacgga agcgtatgtg cctgtactcg ccctctgcca tcgaaccgaa aacctccgcg
     4501 cgtggattgc cgggcctcac ggcagtctat cacggccgca atcattcaca ggacagacgc
     4561 gccgagggcc cgccttacga gcaggtaggc cgggtagctg agagcgagga gcgccagggc
     4621 gatgaggcta tctcgcgtgc tgctcaaaaa cgcgctcagc atgaagccga ccgagccggc
     4681 cagcgcgagc gccgtcgtcc agggatggcc gagcgcgcgc cagggccgct gcgcgtcggg
     4741 ggcgctgcgg cgcagggcga agacggcggc gaaggagacg gcgtagttta agacgaagaa
     4801 gaaggcgagc accgctatga cctgcccgaa gccgccgccc gcgacgaaga ggagcgcgac
     4861 gagcgcgctg gcggcgagcg cgacggcggg cgtgccgccc tcgttgacgc cgacggcgcg
     4921 cggcgggaac aggcggtcgc gccccatcgc gaacggcacg cgcgtcgcta tcagcaggag
     4981 cgcgttgacg ctgctcagca gcgcgacgac cgtcagcgcg cgcacgagtg tgtcgccgcg
     5041 cggcccgaac agctcggagg cggcctcgcc cgccgcaagc tcagcgcccg c
//
LOCUS       DASPKR010000163         5984 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_796510, whole genome shotgun sequence.
ACCESSION   DASPKR010000163 DASPKR010000000
VERSION     DASPKR010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5984)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5984
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_796510"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1642)
                     /locus_tag="VD968_04635"
     CDS             complement(<1..1642)
                     /locus_tag="VD968_04635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13711.1"
                     /translation="MTRPSRLSLRPTPDSLAAVAVSLAPLLYFLPATRGRLFLSPDDG
                     VIFNIPLRSAAARIAAEGYLPLWNPYLFGGMPLHGAAQAGLLFPLNWFFLFFDAPAAT
                     NLMMLSTYALAALGAYLFARRAGSGLLGSVLTSLVYQWCGFLVAQVGHTNIVQTAALL
                     PWVLWAVEGYGATGRRGRAVTLSALVALQVFAGHQQTLAYSLLLAAAYALVMWRAAPA
                     RKWYLWSLIFLAAGLVLAAVQILPTYELMRNSLRAKTSFDFFSSFSLPPRFLLTFLAP
                     YVLGGGDGRLFLAPYVSEPFYGEYIGYVGLGALMLAAVALPLRRDARAKFWWAVAVVA
                     LALALGRNWPFKLYGVIYYTPVLGLFRVPARHMMEVDFALAVLAGRGLTALASAENRK
                     RAARLALAVGAGVTLLTLLVVTVGRPAAFRLSREAPVTLMRAPELFLPVALAALSAWA
                     LWRFASRASRATAVLLVAVVALDLCLWGQSSGWRVASPTRKSELWSTPEEVEFLRGRA
                     PREPFRILTVPQTFDPAAPVNAAEQPSGPLVLALQPDTY"
     gene            1630..3420
                     /locus_tag="VD968_04640"
     CDS             1630..3420
                     /locus_tag="VD968_04640"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYE13712.1"
                     /translation="MDESLNQGRRAAGELGFDWRRAAESARAWASARRAGLACAALLS
                     VMSLQMLSVVARKSITVDEIVMIPAAYYHLAAGDFQLVHEHPPLSKILAGVPLLFIQP
                     AEAGPAKIRAPRGSPEAKWAMQESFWEENRAAFGAICFWARVPAVALTAGLGVLLFAF
                     ARGLFGARAAVLAVALYSLEPTVLAHGRVVQTDVPAAFGYLLTFFALYRYARSRTLRG
                     AAFVGAAGGLAVLAKFSMLLVGPVLAAFFLWLIWRAPREGKTRKAVAAHAALAAAALV
                     VVVNAAYFFQSRALGAADARWIAQSFPASAGAVTAAVNILSYLFPTDFVLGVFWQIWH
                     NREGHPASLLGQYSPHGWWYYFPVAFSLKTTLPFLLLSLASLAWAAARWVKTKEPRLF
                     VVLAPFALYTAFVLLSGITIGVRYYLPAYVFLFILGGVLLDRLLASRAPAVALAFALL
                     CWAAVEAARAYPDHMSYMNQLARGRPRWWYLSDSNVEWGDDVRALAEYLRARGETRVR
                     GAFLAGFLTLSHYGVSYVDLLAPEGTELPRARYTAIGASFLNGSTVPLRRTAGRLQTD
                     EERVNTFDAYRRREPEAVFGGSIYLFRNED"
     gene            3410..5347
                     /locus_tag="VD968_04645"
     CDS             3410..5347
                     /locus_tag="VD968_04645"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYE13713.1"
                     /translation="MKTDAEGRGFVRRRGAGVALVVVLAAGAVLYAAGAGRNPPGFYI
                     DESSIAYNAHLIATTGRDEHGREWPLFFRAFGDYKNPVYVYLLAAVFALAGPSVIAAR
                     LLSASAGVLTAAALAALGARLSGRRVVPPLVAMTALLTPWLFELSRVVIEVAMYPLAV
                     ALFLLAVRRATGGDRWRWTDSLLVAASLALLTYTYSVGRLLAPLLALGLALFARRGRA
                     RPVLLTWALYALSLAPLAVFNLRHPGALTGRFRLITYIKPQTTYAEAAAEFVRHFAGN
                     LNPWRLLVTGDPNQDQIASIYNTGLLLGATFVLAVAGACVAAVRARRGDGWWLFVLYG
                     LAASVVPASLTNDHTHMLRLAALPVFAVVLTAPALEWLLDDGRARRWALAAAVALTLA
                     QGAHFQWLYRRHEQAPRRAHLFDRDYPTEILPAALSAAGGRRVYLADALPIPGYIQAF
                     WHASLRGLPVSTFERLPPDAPAPEGSAVITTEDVRPRCRALAEDEPYTVCLMEGAPRA
                     PAPLPAEGFRASLSVAAAPARLRTGERAEVLVVLRNESAATWRARERGGSPLQVHVGN
                     HWLGSDGRAVVNDDGRGPLPRDLAPGDEAEVRLTVNAPKRPGDYLLEIDVLQEGVSWF
                     GPKGSPTLRLPVKVVARGWLD"
     gene            complement(5355..>5984)
                     /locus_tag="VD968_04650"
     CDS             complement(5355..>5984)
                     /locus_tag="VD968_04650"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HYE13714.1"
                     /translation="ARECFRPLAFGETEEARRRLGVGDEFLLAVGTIEPRKNLPALVR
                     AFGEVVRERPRSDLQLVIAGGRGWLSGPLSAAIEESHARQRVHFVGYVPDETLRALYS
                     SCRAFVYPSFYEGFGLPPLEAMSCGAPVVAGRTPAVAEVTGGAARLVNPESPREIAEA
                     LIELLDSEEARRRLSEAGLRRASGFSWERTARMTSEVYEEALKRRGGRE"
BASE COUNT          848 a         2087 c         2159 g          890 t
ORIGIN      
        1 tgtatgtgtc aggctgcaag gcgagcacga gggggccgga gggttgctcg gccgcgttga
       61 ctggcgccgc agggtcgaac gtctgcggga ctgtgaggat tctgaagggt tcgcgcggcg
      121 cccgcccgcg aaggaactcg acctcctcgg gcgtgctcca cagctcactc ttgcgcgtgg
      181 ggctcgcgac gcgccagccg ctcgactggc cccagaggca caggtcgaga gcgacgacgg
      241 cgactaggag gacggccgtc gcccgcgacg cgcgcgaggc gaagcgccag agcgcccatg
      301 cgctcaacgc cgcgagcgcg acggggagga aaagctccgg cgcgcgcatt agtgtcacgg
      361 gcgcctcgcg cgagagccgg aaggcggcgg gcctgcctac tgtgacgacc agcagagtta
      421 agagcgtgac gcccgcgcca accgcgagcg cgagcctcgc cgcgcgcttc cggttctcag
      481 cagacgcgag cgccgttaat cccctgccgg ccagcaccgc gagcgcgaag tcaacttcca
      541 tcatgtggcg cgcggggacg cggaagaggc cgagcacggg cgtgtagtaa atgacgccgt
      601 agagcttgaa gggccaattg cggccgagcg cgagcgcgag cgccacgacg gcgacggccc
      661 accagaactt agcccgcgcg tcgcgccgca ggggcagcgc gacggcggcg agcatgagcg
      721 cccccaatcc aacgtagccg atgtactcgc cgtagaacgg ctccgagacg tagggcgcga
      781 ggaagaggcg gccgtcgccc ccgcccaaga cgtagggcgc gaggaaggtc aggaggaagc
      841 gcggcggcag gctgaacgac gagaagaagt cgaaggaggt cttggcgcgg aggctgttgc
      901 gcatcaactc gtaggtcggt aagatttgca ccgccgcgag cacgagccca gccgccagaa
      961 agatcagcga ccacagatac cacttccgcg cgggggccgc gcgccacatc actaaggcgt
     1021 aggccgccgc aagaagcaga gagtatgcga gcgtctgctg gtggcccgcg aagacttgca
     1081 gggcgacgag cgcgctgagg gtgacggcgc ggcccctccg ccccgtcgcc ccgtaaccct
     1141 cgacggccca gagaacccac gggagcagcg cggccgtctg cacaatgtta gtgtggccca
     1201 cctgcgccac gaggaagccg caccactgat agacgaggct cgtgagcact gagcccaaca
     1261 ggcccgaccc cgcgcgccgc gcgaacaggt acgcgccgag cgccgccagc gcgtaggtcg
     1321 agagcatcat caggttcgtc gccgcgggcg cgtcgaagaa gaggaagaac caattgagcg
     1381 ggaagagcag gccggcctgc gccgcgccgt gcagcggcat cccgccgaag aggtaagggt
     1441 tccagagcgg aaggtaccct tcggccgcga tgcgcgccgc cgccgagcgg agcgggatgt
     1501 taaagatgac gccgtcgtcg ggcgaaagaa agaggcggcc gcgcgtggcc ggcaggaagt
     1561 agaggagagg ggcgagcgag actgcgacgg ccgcgagcga gtcgggcgtg ggtctaaggc
     1621 tcaggcgcga tggacgagtc attaaatcag gggcggcgtg cggcgggcga gttgggcttc
     1681 gactggcggc gtgctgcgga gtctgcgcgc gcgtgggcct cggcgcggcg cgcggggctc
     1741 gcgtgcgcgg cgctgctctc cgtcatgtcg ctgcaaatgc tctccgtggt cgcgcgcaag
     1801 agcatcaccg ttgacgagat agtgatgata ccggcggcat actaccacct cgcggcgggc
     1861 gacttccaac tcgtccacga gcacccgccg ctctcgaaga tactcgccgg agtgccgctc
     1921 ctcttcatac agccggccga ggcggggccg gcgaagatca gggcgccgcg cggctcgccc
     1981 gaggcgaagt gggctatgca ggagagcttc tgggaggaga accgcgccgc gttcggggcg
     2041 atctgcttct gggcgcgcgt tcctgccgtc gccctgacgg cggggctggg cgtgctcctg
     2101 ttcgccttcg cgcgcgggct gttcggggcg agggcggcgg tgctggccgt cgcgctatac
     2161 agcctcgagc cgacggtgct cgcgcacggg cgcgtcgtgc agactgacgt gccggcggcc
     2221 ttcggctacc tgctcacctt cttcgcgctc taccgctacg cgcgctcgcg cacactccgc
     2281 ggcgccgcat tcgtcggcgc ggcgggcggc ttagccgtgc tcgcgaagtt ctcgatgctg
     2341 ctggtcggcc ccgtgctcgc ggccttcttt ctgtggctca tctggcgcgc gcctcgcgag
     2401 gggaagactc gtaaggccgt ggccgcgcac gcggcgctcg cggccgcagc cctcgtcgtc
     2461 gtcgtcaacg ccgcgtactt tttccagagc cgcgcgctcg gcgcggctga cgcgcgatgg
     2521 atagcgcagt cgttccccgc gagcgcgggc gcggtgaccg cggccgtaaa tatcctctct
     2581 tacctcttcc cgacagactt cgtgctaggc gtcttctggc aaatctggca caaccgcgag
     2641 gggcatccgg ccagtttgct cgggcagtac agcccgcacg gctggtggta ttacttcccc
     2701 gtggccttct ctttgaagac gacgctgccg ttccttctgc tctcgctcgc atcgctcgcg
     2761 tgggcggccg cgcgttgggt gaagacgaaa gagcctcgac tcttcgtcgt gctcgcgccg
     2821 ttcgcgctct acacggcctt cgtgctgctg agcggcataa ccatcggcgt gcgctactac
     2881 ctgccggcct acgtcttctt attcatcctg ggaggcgtgc tgctcgaccg gctgctcgcc
     2941 tcgcgggcgc cggccgtcgc ccttgcgttc gcgctccttt gctgggcggc cgtcgaggcc
     3001 gcgcgcgcct acccggacca catgagctac atgaaccagc tcgcgcgcgg ccggccgcgc
     3061 tggtggtact tgtccgactc gaacgtggag tggggcgacg acgttcgcgc gctcgccgag
     3121 tacctgcgcg cgcgcggaga gacgcgagtg cgcggcgcgt tcctcgcggg cttcctgacg
     3181 ctcagccact acggcgtctc ctacgttgac ctgctcgcgc cggaaggcac ggaacttccg
     3241 cgggcgcgct acacggccat aggcgcgagc ttcctcaacg gctcgacggt gccgctgcgc
     3301 cggactgcgg ggcgcttgca gacggacgag gagcgcgtga acaccttcga cgcctaccgt
     3361 cggcgcgagc ccgaggccgt cttcggcggc tcgatctacc tcttcaggaa tgaagactga
     3421 cgcggagggc cgaggcttcg tgcggcggcg cggcgcgggc gttgcgctcg tcgtcgtgct
     3481 ggcggcgggc gccgttcttt acgccgccgg cgcgggccgc aacccgcccg gcttctacat
     3541 agacgagtcg tccatcgcat acaacgcgca cctcatcgcc acgacggggc gcgacgagca
     3601 cggccgggag tggccgctct tcttccgcgc cttcggcgac tacaagaacc ccgtttatgt
     3661 ctatctgctc gccgccgtct tcgcgctagc ggggccgtcg gtgattgcgg cgcggttgct
     3721 gagcgcgtcg gcgggcgtgc tcaccgcggc ggcgctcgcc gcgctcggcg cgagactctc
     3781 ggggcggcgc gtggtcccgc ccttggtcgc gatgacggcg ctgctgacgc cgtggctctt
     3841 cgagctgagc cgcgtcgtca tagaggtcgc aatgtacccg ctcgcggtcg cgctcttcct
     3901 gctcgcagtg cggcgcgcga ccgggggcga caggtggcgg tggacagact cgctgctcgt
     3961 cgccgcgtcg ctcgcgctcc tgacctacac ttattctgtg ggccggctgc tcgcgccgct
     4021 cctcgcgctc gggctcgcgc tgttcgcgcg gcgcggccgg gcgcggccgg tgctcctgac
     4081 gtgggcgctc tacgcgctct cgctcgcgcc cctcgccgtc ttcaacctcc gccaccccgg
     4141 cgcgctcacg ggccgcttcc ggctcatcac ctacataaag ccgcagacga cttacgcgga
     4201 ggccgcggcg gagttcgtca ggcacttcgc agggaacctc aacccctggc ggctgctcgt
     4261 gacgggcgac cctaaccagg atcagatagc gagcatctac aacacgggac tgctgctcgg
     4321 cgcgaccttc gtgctcgccg tcgcgggcgc gtgcgtggcg gccgtgcggg cgcggcgcgg
     4381 cgacgggtgg tggctcttcg tgctctacgg gctcgcggct tcggtcgtcc ccgcgtcgct
     4441 cacgaacgat cacacgcaca tgcttcggct cgcggcgctg cccgtcttcg cggtcgtgct
     4501 gacggcgccg gcgctcgaat ggctgctgga cgacgggcgg gcgcggcgtt gggctctcgc
     4561 cgcggcggtc gcgctcacgc tggcgcaagg ggcgcacttc cagtggctat accgccgtca
     4621 cgagcaggcg ccgaggcgcg cacacctctt cgaccgcgac tacccgactg aaattttgcc
     4681 ggccgcgctc tccgcggcgg gcgggcggcg cgtctatctc gccgacgcgc tgccgatacc
     4741 cggctacata caggccttct ggcacgcgtc gctgcggggc ctgcccgtct ctaccttcga
     4801 gaggctcccg cccgacgccc ccgcgcccga aggctcggcc gtcatcacta ccgaggacgt
     4861 gaggccgcgc tgccgcgcgc tcgcggagga cgagccgtac acggtctgcc tcatggaagg
     4921 cgcgccgcgc gcgcccgcgc cgctcccggc cgaaggtttc cgcgcgagct tgagcgtcgc
     4981 ggccgcgccc gcgcggctgc gcacgggcga gcgggccgaa gtgctcgtcg tcctcaggaa
     5041 cgagagcgcg gccacctggc gcgcgcgcga gcgcggcggc tcgcccttgc aggtgcacgt
     5101 cggcaaccac tggctaggtt ccgacgggcg cgcggtcgtg aacgacgacg ggcgcggccc
     5161 cctgccgcgc gacctcgcgc ccggcgacga ggcggaagtg cgcctcaccg tcaacgcgcc
     5221 caagcggccg ggcgattatc tgctggagat agacgtgctt caggaaggag tctcgtggtt
     5281 cggcccgaag ggctcgccca cgctcaggct gcccgtcaag gtcgtcgcgc gcgggtggct
     5341 cgattagcgc cgcgtcactc ccggcccccg cgccgcttta gagcctcctc gtaaacttcc
     5401 gaggtcatgc gggcggtccg ctcccaggag aacccggagg cgcggcggag gccggcttca
     5461 gagagccggc ggcgggcctc ctcggagtcg agcagttcga tgagggcttc ggctatctcg
     5521 cgcgggctct cggggttgac caggcgcgcg gcgccgcccg tcacctcggc gacggcgggg
     5581 gtgcggcccg cgacgacggg cgcgccgcag ctcatcgctt cgagcggcgg caggccgaag
     5641 ccctcgtaga acgacggata gacgaaggcg cggcaggagg agtagagagc gcgcagggtc
     5701 tcgtccggca cgtagccgac gaagtgcacg cgctggcgcg cgtgcgactc ttcgatggcg
     5761 gccgacagcg ggccgctcag ccacccgcgc ccgccggcta tgacgagctg aaggtcgctg
     5821 cggggccgct cgcgcacgac ctcgccgaag gcgcgcacga gcgccggcag gttcttgcgc
     5881 ggctcgatgg tgccgaccgc caggaggaac tcgtcgccga cgccgagcct tcgccgggcc
     5941 tcttcggtct ccccgaacgc gagcggccgg aagcactcgc gcgc
//
LOCUS       DASPKR010000164         3112 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1055695, whole genome shotgun sequence.
ACCESSION   DASPKR010000164 DASPKR010000000
VERSION     DASPKR010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3112)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3112
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1055695"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..549)
                     /locus_tag="VD968_04655"
     CDS             complement(<1..549)
                     /locus_tag="VD968_04655"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HYE13715.1"
                     /translation="MVAILEQRKLRDFDWLLTLLALAIAVFGTWQIYNAQPDKSYWTK
                     QLLGLGVSAAVMLIVAFTDYRKLVNIAPVFYAFGLLLLVIVLVPGIGLKINGQRAWIG
                     VPGLGQFQPSEFMKIPTVLMLARYFGRPRQSALTVKETLMGIAIMALPIGLILLEPDS
                     GQAITYMPLLAVVLFLSSVRMWL"
     gene            795..2279
                     /locus_tag="VD968_04660"
     CDS             795..2279
                     /locus_tag="VD968_04660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13716.1"
                     /translation="MIDIFERDIRRTGEGRDQLGFVREPRAVSYSQLSGADWKPLLPG
                     NKAAAATTFLAPVATGSPLAALLGQQFAPIATPIVFSGFSPEAIAQFAPQLQSQGLLP
                     VSGVGGSSPLSPLGKVTDETLLPGSSVSVQLVRGDYSVAASGTVTHRDGERIYAFGHP
                     FLSLGSSDMPMSESSVVTVIPNTLNSFKLTVPGQMVGAVSQDRATGIYGQLGRAPKMI
                     PVQINLHTNREQVETFRYEVANDEFLTPLLLNMTIYSTITSSERSLGDSTVSVRGKIE
                     VKGQEPVYLERRFSAMSASISAAGSVAGPVAALLTSGFDGVELGQITLDIAAADARRA
                     ATLDRVSLNQNEVRGGDTVEVQAFVRTESGRQFIQRIPVEIPRDVPPGQLVLFVGDGG
                     SLQQASATQSFVPQDLGQLVGAINRIKKNDRLYVKLFRVTNGAVIGTDEMPNLPPSFV
                     ATLNSDRSTGGHTPTTLSPIAEKELPPAEHVVSGQQLIAINVNR"
     gene            complement(2345..>3112)
                     /locus_tag="VD968_04665"
     CDS             complement(2345..>3112)
                     /locus_tag="VD968_04665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13717.1"
                     /translation="RAEDAASRLRVLALAWFVVPVAFFSLSGSKLPGYVLPALPGAAL
                     LAADRVHRYVRGEGGLTAMRVTGVLALLLFAAGLAYAFQGSLPWGGGAGAPGLSTACA
                     LFVVAPAGASGALALLWPGRRALCATAVATGSLLTVVLIAGCALGPAAKRESVRGLLI
                     TAAEQGHGSLPVFQLHAVERSAEFYAAGRLAYDAAGEPLKFEGANQVEEAVRRSGGSG
                     LVLVPTEHEGQLTGWEPFDARVLGSNGSYSLVLVKVR"
BASE COUNT          532 a         1117 c         1008 g          455 t
ORIGIN      
        1 gagccacatc cggaccgagg agaggaagag gacgacggcg aggagcggca tgtaggtgat
       61 ggcctgcccg gagtccggct cgaggaggat gaggccgatg gggagcgcca tgatggcgat
      121 gcccatcagc gtctccttca cggtcagcgc cgactggcgc ggccgcccga agtagcgcgc
      181 cagcatcagc accgtgggga tcttcatgaa ctccgacggc tggaactggc cgaggcccgg
      241 cacgccgatc cacgcccgct ggccgttgat cttgagcccg atgccgggga cgagcacgat
      301 gacgagcagg agcagcccga aggcgtagaa gacgggcgcg atgttgacca gcttgcggta
      361 gtccgtgaag gccacgatga gcatcacggc cgccgagacg ccgagcccga gcagctgctt
      421 cgtccagtag ctcttgtcgg gctgcgcgtt gtagatctgc cacgtcccga agacggcaat
      481 cgccagcgcc agcagcgtca gcagccagtc gaagtcgcgg agcttgcgtt gttcgaggat
      541 tgcaaccata aaacaggtgc cgggtgccgg gcgccgggcg tcgggcgcga ccggctttca
      601 ccgacgcccg acgcccggca ccccgacacc tatcttttcg cgatctgttc cggcgccggc
      661 ttgggcgcga gttcggggta gactttggcg acgtactggt cgtagacggc gcggacggcc
      721 ggggcggcgt aggtgccgcc tacgccttcc cgttctcgaa agagcccatc gcgggcatca
      781 cgcccatcaa gcagatgata gacattttcg agcgcgacat ccgtcggacg ggcgaaggcc
      841 gcgaccaact cggcttcgtg cgcgagccgc gcgccgtatc ctactcgcag ctctcggggg
      901 ccgactggaa gccgctgctg ccgggcaaca aggctgccgc cgcaacgact ttcctagcgc
      961 ctgtggcgac gggctcgccg ctcgccgcgc tgctcggcca gcaattcgcg cccatcgcaa
     1021 cgccgatcgt cttcagcggc ttctcgccgg aggcgatagc tcagttcgcg cctcagcttc
     1081 agtcgcaggg gctccttccc gtctcgggcg tcggcggctc gtcgccgctc tcgcctctcg
     1141 gcaaggtgac ggacgagacg ctgttgccgg gctcatccgt gagcgtgcag ctcgttcgcg
     1201 gcgactactc ggtcgcggcc tccggcaccg taacgcaccg cgacggcgag cgcatatacg
     1261 ccttcggcca cccgttcctg agcctcggct cgtccgacat gcccatgtcc gagtcgtcgg
     1321 tcgtcaccgt catcccgaac acactgaact ccttcaagct gacggttccg gggcagatgg
     1381 tcggcgccgt ctcgcaggat cgcgccacgg gcatctacgg ccagctcggc cgcgcgccca
     1441 agatgatccc cgtgcagata aacctgcaca cgaaccgcga gcaggtcgag actttccgct
     1501 acgaggtcgc aaacgacgag tttctgacgc ccctgcttct gaacatgacg atctacagca
     1561 ccatcacttc gagcgagcga agcttgggcg actcgaccgt gagcgtgcgc ggcaagatcg
     1621 aggtcaaggg gcaggagccg gtctatcttg agcgccgctt ctcggccatg tcggccagca
     1681 tctcggccgc gggctctgtg gcgggcccgg tcgcggcgct gctcacgagc ggcttcgacg
     1741 gcgtggaatt gggccagata accctcgaca tcgccgcggc cgacgcccgc cgcgccgcga
     1801 cgctcgaccg cgtctccctc aaccagaacg aagtccgcgg cggcgacacc gtcgaggttc
     1861 aggcgttcgt ccgcacggag tcgggccggc agttcataca gcgcattccc gtcgagattc
     1921 ccagggacgt acctccgggc cagctcgtgc tcttcgtagg cgacggcggc tctttgcagc
     1981 aggcttccgc gacgcagagc ttcgtgccgc aggacttggg tcagctcgtc ggggcgatca
     2041 accgcatcaa gaagaacgac cggctctacg tgaagctctt ccgcgtcacg aacggcgccg
     2101 tcataggcac ggacgagatg ccgaaccttc cgccctcctt cgtcgccacg ctcaacagcg
     2161 accgaagcac cggcggccac acgcccacga cgctctcgcc cattgccgag aaggagcttc
     2221 cgcccgccga gcacgtcgtt tcgggtcagc agctaatcgc catcaacgtt aaccgctgag
     2281 gcttcgagct cgagcgcaga cgaagagggg ggcgcgacgg tgcgcccccc tcttcgtctg
     2341 ttcactacct gaccttcact aggacgagcg agtagctgcc gttactgccg agcacgcgag
     2401 cgtcgaaggg ctcccagccc gtcaactgcc cctcgtgctc cgtaggcacg agcacgaggc
     2461 cgctcccgcc gctccgcctt acggcctcct cgacctggtt cgcgccctcg aacttcagcg
     2521 gctcgccggc cgcgtcgtag gcgaggcggc ccgcggcgta gaactccgcg gagcgctcga
     2581 ccgcgtgaag ttgaaagacg ggcagcgagc cgtgtccctg ctccgccgcc gtaatgagca
     2641 gtcccctgac cgactcgcgc ttcgccgccg gcccgagcgc gcaacccgct atcagcacta
     2701 cggtcaacaa actcccggtc gccacggcgg tcgcgcacag cgcacgccgc cccggccaga
     2761 ggagcgccag cgccccgctc gcgccagccg gcgcgacgac gaagagcgcg caagccgtcg
     2821 aaagccctgg cgcgcccgcg ccgccgcccc acggcagcga gccctggaac gcgtaagcga
     2881 gccccgcggc gaagagcaga agcgcgagca cgcccgttac acgcatcgca gtgaggccgc
     2941 cctcgccgcg cacgtagcgg tgcacgcggt cggcggcgag cagcgccgcg cccggcagag
     3001 cgggcagcac gtagcccggc agcttcgacc ccgacagcga aaagaacgcg accggcacaa
     3061 caaaccacgc gagcgccaga accctcagcc tgctcgccgc gtcctccgcg cg
//
LOCUS       DASPKR010000165         3435 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1701133, whole genome shotgun sequence.
ACCESSION   DASPKR010000165 DASPKR010000000
VERSION     DASPKR010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3435)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3435
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1701133"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1167
                     /locus_tag="VD968_04670"
     CDS             <1..1167
                     /locus_tag="VD968_04670"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HYE13718.1"
                     /translation="GLKGAVLFYDAQVEYAERLAVENALAARESGARVLTYARVERLI
                     KEGGAVRGVEFTDTLGGGSHKARSRVVLNAAGPWVDEVLGGEAGRGEPLVGGTKGSHV
                     VVGAFEGAPGVALYSEAIEDGRPFFVIPWDGKFLVGTTDERYSGDLDRVDASPREVEY
                     LLREANRLLPSANLTPGRVLYTYSGVRPLAFAGSRAEAAVTRRHFVRPSRLLGLFSLV
                     GGKLTTYRSLAEQAVSLVFKELGRRPRPCETMTTPLPGAVSFDEFGRHFRERSTLAPR
                     STERLLKIYGSRAGLVLELAGRHHELREVISEETGSVAAEVVFSFESEMAETLSDCLF
                     RRTMVGLNSAAGTDAAERAAAVAQKFLGWGEERAAREVENYAGEVERLRPRVPE"
     gene            complement(1232..1537)
                     /locus_tag="VD968_04675"
     CDS             complement(1232..1537)
                     /locus_tag="VD968_04675"
                     /inference="COORDINATES: protein motif:HMM:NF024622.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4032 domain-containing protein"
                     /protein_id="HYE13719.1"
                     /translation="MIPFKLDYVIEQALAPRAGEEQKLLRKLAGVRLTPGEAASEWPR
                     VLEHKWFMSERLGRDTGLRVAAIDYFENVRLPRARHTEAKSRVPWLRSTTQAQRVMA"
     gene            1721..2632
                     /locus_tag="VD968_04680"
     CDS             1721..2632
                     /locus_tag="VD968_04680"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYE13720.1"
                     /translation="MELSQLRTFREVAETLSFTRASQKLNLTQSAVSHQIKALETELG
                     EPLFIRAKRGVKLSEAGRLALEYTERILEEAAALREHISGRDHEPRGRVRAAAATQAF
                     VHLFADLFESFMREHEGIELSFRTTVSTEQTVADITGGAADVGFASLPVYSPALQVTE
                     LFEDELVLVVGPHHRFAGRAQVDMGELRRERFILFEHGASIRRATDAFFKRVDLRPDL
                     ALESNDTYFIKLMVEHGLGISLLPSWAAREETQAGKLARLRIAGHHLKRSVAMVALGR
                     FQPSPTRAFIAYILAHKAELQETARAV"
     gene            2635..3195
                     /locus_tag="VD968_04685"
     CDS             2635..3195
                     /locus_tag="VD968_04685"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HYE13721.1"
                     /translation="MKTTPETMRALELRSYEGGEGSLALAERPVPRPGRGEVLVRVAA
                     SPVNPSDLMFLRGMYVRKRLPVVPGFEGSGEVVASGGGFLASYLKGRRVACAAPLDGD
                     GTWAEFMVAPASQCIPLRKETDTEQAAAMIVNPFTAWALMGIAQRRQARAVVQTAAAG
                     ALGRMIVRLAASRGVGLINVVRRREQ"
BASE COUNT          553 a         1179 c         1122 g          581 t
ORIGIN      
        1 gggctgaagg gcgccgtgct cttctacgac gcgcaggtcg aatatgccga gcgcctcgcc
       61 gtcgagaacg cgctggcggc gcgcgagtcg ggcgcgcgcg tgctcaccta cgcgcgggtc
      121 gagaggctga ttaaagaggg cggcgccgtc cgaggtgtcg agtttacaga cacgcttggc
      181 ggcggctctc acaaagcccg ctcgcgcgtc gtcctaaacg ccgcggggcc gtgggttgac
      241 gaggtgttgg gcggagaggc cgggcgcggc gagcccctcg tcggcgggac gaagggcagt
      301 cacgtcgtcg tcggcgcgtt cgagggcgcg cccggcgtcg ccctctactc cgaggcgatt
      361 gaagatggca ggcccttctt cgtcatcccc tgggacggga aatttttagt cggcacgacc
      421 gacgagcgct actcgggcga ccttgaccgc gtagatgcca gcccacgcga ggtcgagtac
      481 cttctgcgcg aggcgaaccg gctgctccct tccgcgaacc tgacgcctgg ccgagtgctc
      541 tacacgtact cgggcgtgcg cccgctcgcc ttcgccggct cgcgcgccga agcggcggtg
      601 acgcgtcgcc acttcgtgcg cccgtcacgc cttctgggcc tcttctcgct cgtcggcggg
      661 aagctcacca cctaccgcag cctcgccgag caggcagtct ctctcgtctt caaagagcta
      721 ggccgcaggc cgcggccgtg cgagacgatg acgacgccgc tgcccggcgc cgtcagcttc
      781 gacgagttcg ggagacattt ccgcgagcgc agcacgctcg cgccccgaag caccgagcgg
      841 ctccttaaaa tctacgggtc gcgcgcgggg cttgtgcttg agttggccgg gcggcaccac
      901 gagttgcgcg aagtcataag cgaagagacc gggagcgtcg ccgccgaggt cgtcttctcg
      961 ttcgagagcg agatggcaga gacgctatca gactgtctgt tcaggcgcac gatggtcggc
     1021 ctgaactcgg ccgccggcac cgacgcggcc gagcgcgcag ctgccgtagc gcagaagttt
     1081 ctgggatggg gcgaagagag ggccgcccgc gaagtcgaaa actacgcggg cgaagtcgag
     1141 cgccttcgcc cccgcgtgcc tgaatgattt aagggggcgg ggctatcaat gtccccgccc
     1201 ccgcctgctt atcagaaact gccgccgcag ctcacgccat cacgcgctgg gcctgcgtcg
     1261 tgctgcgaag ccacggcacg cgcgacttcg cttcggtgtg tcgcgcgcgc gggagccgca
     1321 cgttctcgaa gtagtctatc gcggccaccc ggagccccgt gtcgcgcccc agccgctcgc
     1381 tcatgaacca cttgtgctcg agcacgcgag gccactccga tgcggcctcg cccggcgtca
     1441 gcctcacgcc cgcaagcttt cttagaagct tctgctcctc gcccgcccga ggcgcgagcg
     1501 cctgctctat cacgtaatcc agcttgaaag gaatcatcta aatcgtcccc cttctgctcg
     1561 cgcccgaagc ccatccccga ggcgccttcc gtctgttcgc tgtttttccc gaaggttcga
     1621 cgtggatgat aggcacgggt ttgcccggcg gtctagctca ttgttttaat ccctgttatt
     1681 aactatattc atcgctgacc cctcgaaaga gagctaagcg atggagcttt cacagttacg
     1741 cacgttccgc gaagtggccg agacgctcag tttcacgcgg gcgtcacaga aacttaacct
     1801 cacgcagtcg gccgtgagcc accagataaa ggctctggag acggagctgg gcgagccgct
     1861 cttcatacgc gccaagcgcg gcgtgaagct ctcggaggcc ggccgcctcg cgctcgaata
     1921 caccgagcgc atcctggaag aggccgccgc gctgcgcgag cacatatcgg ggcgtgacca
     1981 cgagccgcgc gggcgcgtgc gagcggccgc cgccacgcag gccttcgtgc acctcttcgc
     2041 agacctcttc gagtccttca tgcgcgagca cgaaggcata gagctctcct tccgcacgac
     2101 cgtgagcacg gagcagacgg tagcagacat cacgggcggc gccgccgacg tgggcttcgc
     2161 ctccctcccg gtctattcgc ccgcgcttca ggtcacggag ctgttcgagg acgagcttgt
     2221 gctggtcgtc ggcccgcacc accgcttcgc cggccgggcg caggttgaca tgggggagct
     2281 gaggcgcgag cgcttcatac tcttcgagca cggcgcttcg atacgccgag ccacggacgc
     2341 cttcttcaag cgcgttgacc tgaggcccga cctcgcgctc gaatccaacg acacatactt
     2401 cataaagctc atggtcgagc acgggctcgg gatatcgctc ctgccctcct gggcggcgcg
     2461 cgaggagacg caggccggca agctcgcccg gctccgcatc gcgggccacc acctgaagcg
     2521 ctcggtcgcc atggtggcgc tcggccgctt tcagccctcg ccgacgcgcg ccttcatcgc
     2581 ctacatcctc gcccacaagg cggagcttca ggagaccgcg cgcgcggttt gagcatgaag
     2641 acgacgcctg agaccatgcg ggctttggag cttcgctctt acgagggcgg agagggctcg
     2701 ctcgcgctcg ccgagaggcc cgtgccgcgg cccggaaggg gcgaagtgct cgtgcgcgtg
     2761 gctgcctcgc ccgtgaaccc ctccgacctg atgtttttgc gcggcatgta cgtgcggaag
     2821 cgcctgcccg tcgtccccgg cttcgagggc agcggcgagg tcgtcgcctc cggcggcggc
     2881 ttcctcgcct cgtacctgaa gggcaggcgc gtggcctgcg ccgccccctt agacggcgac
     2941 ggcacatggg ccgagttcat ggtcgcgccc gcctcgcagt gcataccgct gcggaaggag
     3001 actgataccg agcaggccgc cgcgatgatc gtcaacccct tcacggcgtg ggcgctgatg
     3061 ggcatagccc aaaggcggca ggcgcgcgcc gtcgtgcaga cggcagcggc tggcgcgctc
     3121 gggcgcatga ttgtccggct agccgcgtcg cgcggcgtcg ggctcattaa cgtcgtgcgg
     3181 cgccgcgagc aatagaactg ctaatcgttt taacatcact taagagcctt gtgaggcaat
     3241 attgtagcgg ttagcgcggg cgcccacaag ccgacgtaac ctccgccatt tcaggcagat
     3301 aacatagatg ccgacgcctt cggccgggat gctcagacag agggccggcg ccccgctacc
     3361 cttcgcgcat ccccggaacg aaaagcacct tcccgcccgt catgtcctgc acgtactggc
     3421 cgagcccttc ggcgg
//
LOCUS       DASPKR010000166         2398 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_926460, whole genome shotgun sequence.
ACCESSION   DASPKR010000166 DASPKR010000000
VERSION     DASPKR010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2398)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_926460"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..492)
                     /locus_tag="VD968_04690"
     CDS             complement(<1..492)
                     /locus_tag="VD968_04690"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13722.1"
                     /translation="MLKPFARHATALFAVLLLSALVPAQAPPAPAQPRPFKIRYRLAM
                     PQPESHLFEVQIEVAGTAGERSVEFQMPRWSPGRYAVFDFAKNVQEVSAMGRCLPEER
                     CGSRDFPVERVDTQTWRVASAGSDEVRLSYKVFADDLSGTFSQLDERHANFNGGSVFM
                     YVAG"
     gene            complement(670..>2398)
                     /locus_tag="VD968_04695"
     CDS             complement(670..>2398)
                     /locus_tag="VD968_04695"
                     /inference="COORDINATES: protein motif:HMM:TIGR03696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RHS repeat-associated core domain-containing
                     protein"
                     /protein_id="HYE13723.1"
                     /translation="AGHVAYGNSTSAGYTYDGGARLTAKSLAGPSGPLAELGYGWNDL
                     FELTGIKDGLTPSKTQTFGYDPVGRLAQASGSYPQKIYKYDGGGNIELKDGVTYESDG
                     YRVTQGAANGQKVFAAAYDANGNMVSAERNGQGATYRYDGDNQLVQSGGVTMSYDHAG
                     RRVVKSVAGGPTIYYVAPHYQVAVFPDGSRQRTRFIFGDDGLVASMTDVEAGSPPQTA
                     GLPAPGTFYLHKDHILSTLVQTDDAGRLVTSISYEPYGEIGAVEGADTLQQKFTGKEW
                     DDAAGLYYFGARYYDPFIGRFITPDDRLGAPLGRRDALNRYAYVINDPVNNFDPTGHS
                     IFSDIISYAVDGLLIVGGIAAMALGGPVGAVVGGAMLGAGVSGLASNISTQVSGKQFS
                     WAGWGEQLGIGAATGLIAGGIAVGAGAVVDSLAEAGNAAFKIGQVGRLAVNVTAGVVG
                     NAGANMVGTVLNNLATHASLTSGLGSSALLGAVLGGAAAGLSEGVASKLSRVVTMDTA
                     ATEEDERLVQNTIWQSNSLAGDTMPYARVLDATMRNNVLLTLPGVGFSAIGAGFSVLQ
                     AKGWWPQWP"
BASE COUNT          366 a          811 c          828 g          393 t
ORIGIN      
        1 gcccgcgacg tacatgaaga cggagccgcc gttgaagttg gcgtggcgct cgtctagctg
       61 cgagaaggtg ccggagaggt cgtcggcgaa gaccttgtag gagaggcgca cctcgtcgga
      121 gcccgcggag gcgacgcgcc aggtctgcgt gtcaaccctc tcgacgggga agtcgcggct
      181 gccgcagcgc tcttcaggca ggcagcgccc catcgcgctc acctcctgca cgttcttcgc
      241 gaagtcgaag acggcgtatc ggcccggcga ccaccggggc atctggaact cgaccgagcg
      301 ctcgcccgcc gtcccagcaa cctctatctg cacctcgaac aggtgcgact cgggctgcgg
      361 catcgccagc ctgtacctta tcttgaaagg gcgcggctgc gccggcgcgg gcggtgcctg
      421 cgcgggcacg agcgcggaca ggagcaggac ggcgaagagg gcggtcgcgt ggcgtgcgaa
      481 gggttttagc attccgaagc ggctccgaag tttcaagtac gggacgacgg ggagacaaag
      541 gcatggcgcg cgggcgggat tatcggcgcg cgcggcggcg ggtgtcaaaa acggatcgcg
      601 ggccgtgggc cgcgggttag gaggcggcgt gcctctcatc aatccgcggc ccacggcgcg
      661 cgaccgtcgt cagggccatt ggggccacca tcccttcgcc tgcaagaccg agaagcccgc
      721 gcctatggcg ctgaagccga cgccgggcag ggttaaaagg acattgttcc gcatcgtcgc
      781 gtccaacacg cgcgcgtagg gcatagtatc gccggccagg gagttcgact gccaaatcgt
      841 gttctgcacc agccgctcgt cttcctccgt cgctgccgta tccatcgtga ccactcttga
      901 gagctttgag gctacgccct ccgaaaggcc tgcggcggcc ccgcccagca ccgcgccgag
      961 cagtgcggaa gagccgaggc cggaggtgag cgacgcatgc gtggcgaggt tgttgagcac
     1021 cgtcccgacc atgttcgcgc ccgcgttgcc gacgacgccc gccgtcacgt tcaccgccaa
     1081 gcgcccgacc tggccgatct taaaggcagc gttccccgcc tccgcgagtg agtccacgac
     1141 ggcgccggcc ccgacggcga tgccgcccgc gatcaggccc gtcgccgccc ctatgccgag
     1201 ctgctcgccc cagcccgccc aactgaactg cttccccgac acctgcgtcg agatgttcga
     1261 ggccagcccg ctcaccccgg cgccgagcat cgccccgccg accaccgccc ccaccggccc
     1321 gcccaacgcc atcgccgcta tgccgcccac tatcagcaag ccgtcaaccg cgtaggagat
     1381 gatgtcgctg aagatgctgt gccctgtcgg gtcgaaattg ttgacggggt cgttgattac
     1441 gtaggcgtag cggttgagag cgtcgcgcct gccgaggggg gcgccgagcc tgtcgtccgg
     1501 cgtgatgaag cggccgatga aggggtcgta gtagcgcgcg ccgaagtagt agagccccgc
     1561 ggcgtcgtcc cactccttgc ccgtgaactt ctgctgtaag gtgtcggccc cctcgacggc
     1621 gccgatctcg ccgtaaggct cgtaagagat gctggtgacg agccggccgg cgtcgtcggt
     1681 ctgcacgagc gtgctgagta tgtgatcctt gtgcaggtag aacgtgccgg gcgcggggag
     1741 gcccgccgtc tgcggcggcg agccggcctc cacgtcggtc atggaggcga cgaggccgtc
     1801 gtcgccgaat atgaatctcg tgcgctggcg gctcccgtcc gggaagacgg ccacctggta
     1861 gtgcggggcg acgtagtaga tggtcggccc gcccgcgacg ctcttaacga cgcgcctgcc
     1921 ggcgtggtcg tagctcatcg tgacgccgcc ggactgcacg agctggttgt cgccgtcgta
     1981 acggtaggtc gcgccctggc cgttcctttc ggcggagacc atgttgccgt tggcgtcgta
     2041 ggcggctgcg aagaccttct gcccgttcgc agccccctgc gtcacgcggt agccgtccga
     2101 ctcgtatgtg acgccgtcct tcagctcgat gttgccgccg ccgtcgtact tgtaaatctt
     2161 ctgcgggtag ctcccgctgg cctgcgcgag gcgcccgacg gggtcgtagc cgaaggtctg
     2221 cgtctttgag ggcgtgagcc cgtccttaat tccggtcagc tcgaagaggt cgttccagcc
     2281 gtagccgagc tcggcgagcg ggccggaagg ccccgcgagc gacttcgccg tgagccgggc
     2341 gccgccgtcg tacgtgtagc cggcggaggt cgagttgccg taagccacat gccctgcc
//
LOCUS       DASPKR010000167         2266 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1832268, whole genome shotgun sequence.
ACCESSION   DASPKR010000167 DASPKR010000000
VERSION     DASPKR010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2266)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1832268"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..846)
                     /locus_tag="VD968_04700"
     CDS             complement(<1..846)
                     /locus_tag="VD968_04700"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE13724.1"
                     /translation="MYEVVVVGGGVGGLTAAALLAARGLSVCLLERGPDAGGCAAAFE
                     HAGRRYEPGAGLYSCWQRGDIHERVFAELPVGPPEVELIRTPYVVHLPDGARVRVGLP
                     SGEHFAELRAAFPECAGEAERFYLELAPVAEALHDAALRSPGLAAASPLERLKLLARA
                     GRESTKILAGMGKRAADYLGGTSPRFRRFIDAQLQIFAQAPSRDCAYLYAAVALAQPL
                     RGMYTMRGGAQSLPDSLAESIRKSGSTVRLNTPALRLAYDSRGRAAGVQLLSGETVEA
                     GRAVIS"
     gene            complement(859..1740)
                     /locus_tag="VD968_04705"
     CDS             complement(859..1740)
                     /locus_tag="VD968_04705"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HYE13725.1"
                     /translation="MGSPLRPQPPQYESAHAVFGQGAETAADMEAGFNPDNPPWGVAA
                     AALVWVASIVLMVFVPLVTVLPYLVYRMLGTGSPPSEYSLQTDPNVLFVSIVGTIPAH
                     ILTLVVVWAVVTGGKVRRPFWRTIGWGWGRHFGLLLSVGAAVVLLVGGGLVAYFLGGE
                     KTPFERMLESSAAARFATAFLATATAPLVEELVYRGVMFPAFRRALGTVWAVLIVAAL
                     FSAVHVSQYYNNAGVIAAVSMLGLALTLVRAYTGRVLPCFVIHLVFNAVQVAILIFDY
                     FNPGKPAGDAQAGLFFY"
     gene            complement(1791..>2266)
                     /locus_tag="VD968_04710"
     CDS             complement(1791..>2266)
                     /locus_tag="VD968_04710"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYE13726.1"
                     /translation="LPAQLRIAAKREVFRIPFLGWHMRRAGHISINRGSTTEAVESLR
                     RAASEVRPGVSVFLYPEGTRSRDGRLQPFKKGGFKFALQTGLPVVPVAIVGTRALLPR
                     DSIVFRPGPVELRVAPPVPTAGLADSDLPALMRRVREEMAKSFSESGGTLLRSDF"
BASE COUNT          396 a          735 c          841 g          294 t
ORIGIN      
        1 gctgatgacg gcgcggccgg cctcgacggt ctcgccgctc aaaagctgca cgcctgccgc
       61 gcggccccgc gagtcgtagg cgaggcggag cgcgggcgtg ttcagacgga cagtgctgcc
      121 gctcttcctt attgactcgg cgagcgagtc ggggagcgac tgcgcgccgc cgcgcatcgt
      181 gtacatgccg cgcaggggct gcgcgagagc gaccgccgcg tagaggtacg cgcaatcgcg
      241 gctcggggcc tgcgcgaaga tttggagctg cgcgtctatg aagcgtcgga agcgcggtga
      301 agtgccgccg agatagtcgg cggcgcgctt gcccatgccg gcgaggattt tcgttgactc
      361 gcggcccgcg cgcgcgagca gcttgaggcg ttcgagcggc gacgcggccg cgaggccggg
      421 ggagcgcagg gcggcatcgt gcagcgcctc ggcgacgggc gcgagctcta agtagaagcg
      481 ctcggcctcg cccgcgcact cggggaaggc cgcgcgcagc tccgcgaagt gctcgccgct
      541 cgggagccct acgcgcacgc gcgcgccgtc cggcagatgc acgacgtagg gcgtcctgat
      601 tagctcgact tcgggcggcc cgacgggcag ctccgcgaag acgcgctcgt gtatgtcgcc
      661 ccgctgccag cacgagtaga gcccggcgcc cggctcgtag cggcggccgg cgtgctcgaa
      721 ggcggcagcg cacccacccg cgtccggccc cctctcaagg aggcacacac tcaagccccg
      781 cgccgccagc agcgccgccg ccgtcaggcc cccgacgcca ccgccaacga ccaccacttc
      841 gtacataaaa gcgcggagtc agtagaagaa cagccccgcc tgtgcgtcgc ccgcgggctt
      901 gcccgggttg aagtagtcga agatgaggat ggcgacctgc acggcgttga agacgaggtg
      961 gatgacgaaa cagggcagca cgcgccccgt gtaggcgcgg acgagcgtga gcgcgaggcc
     1021 gagcatgctg acggcggcga tgacgcccgc gttgttgtag tactgcgaga cgtggacggc
     1081 cgagaagagc gcggcgacta tcaggacggc ccatacggtg cctaacgcgc gccggaaggc
     1141 ggggaacatc acgccgcgat agaccagctc ttcaacgagc ggcgcggtcg ccgtagcgag
     1201 gaaggcggtg gcgaagcgcg cggccgcgga gctttcgagc atccgctcga acggcgtctt
     1261 ctcgccgccg aggaagtagg ccacgagccc gccgcctacg agcagcacga cggcggcgcc
     1321 gacgctcaga agcagcccga agtggcggcc ccatccccag cctatcgtgc gccagaaagg
     1381 gcgcctgact ttcccgcccg tcacgaccgc ccagactacg acgagcgtca ggatgtgcgc
     1441 tgggatcgtg ccgacgatgc tgacgaacag gacgttaggg tctgtctgta gggagtattc
     1501 gctcggcggc gagccagtgc cgagcatccg gtaaacgagg taaggcaaga cggtcacgag
     1561 cggcacgaag accatcaaga cgatgcttgc gacccagacg agcgcagccg ccgcgacgcc
     1621 ccacggaggg ttgtcggggt tgaagcccgc ctccatgtcg gcggccgtct ccgccccctg
     1681 cccgaagacg gcgtgcgcgc tctcgtattg tggcggctgc ggtcgaagag gtgatcccac
     1741 cccggcagtg taagagaggc gagcgcggag ggtcaaacgg gagagggaac tcagaagtca
     1801 gaacgaagga gcgttcctcc cgactcgctg aagctcttag ccatttcttc gcgaacgcgc
     1861 cgcatgaggg ccgggaggtc tgagtcggcg aggccggccg tggggacggg cggcgcgacg
     1921 cgaagctcga cggggccggg gcggaagacg attgagtcgc gcggcagaag ggcgcgcgtg
     1981 ccgacgatgg cgacagggac gacgggcaag cccgtctgaa gcgcgaactt gaagccgccc
     2041 ttcttgaagg gctgaaggcg gccgtcgcgc gagcgcgtgc cttccgggta taggaagacg
     2101 gagacgccgg ggcgcacctc cgaggccgcg cgccgcaggc tctcgacggc ttctgtcgtg
     2161 gagccgcggt taattgagat atggcctgcg cgtcgcatgt gccagccgag gaaggggatt
     2221 cggaagacct cgcgcttggc cgcgatgcgc aactgcgccg gcaggt
//
LOCUS       DASPKR010000168         3419 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_280708, whole genome shotgun sequence.
ACCESSION   DASPKR010000168 DASPKR010000000
VERSION     DASPKR010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3419)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3419
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280708"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..1571
                     /locus_tag="VD968_04715"
     CDS             72..1571
                     /locus_tag="VD968_04715"
                     /inference="COORDINATES: protein motif:HMM:TIGR00196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HYE13727.1"
                     /translation="MLCGRGNNGGDGAALARALLTAGARVDLVLFGRIEDSKGDARTN
                     FDIVRGLAGAGGTASPSSLAFTQCEGAAEWESLAGSHGSYEVVVDALFGTGLTRPLEG
                     AHARVVEHIDALRSARMGGARPLIVSLDLPSGLDADRAQPIGPAVRADITVTFTAPKP
                     ANVLPPASRFNGRLYTADIGSPRALLDASPSRLFLTEAEDARAWLEATRYAPGSYKNS
                     HGHALVVAGSRDMTGAAVLCASAAMRAGAGLVTLAAPASILPAVAARLPAEVMTAPLS
                     ETPAGGVAFEALGEVERLSERATVVAVGCGLTREHESTRRFVRELIARRTKPVIVDAD
                     GLNALAPWPSELRGTADAPVILTPHEGEMLRLMGARDRSALEDRARAVSEFAAGHRLV
                     VALKGERTLIAAPDGRVLVNATGNRGLGTAGSGDTLTGIIAGFNAQAYATLKGQADAV
                     AATAAAVYVGGLAADIAAAEVGVRALSASDVRERMGAALLALDPEGETP"
     gene            1568..2029
                     /gene="tsaE"
                     /locus_tag="VD968_04720"
     CDS             1568..2029
                     /gene="tsaE"
                     /locus_tag="VD968_04720"
                     /inference="COORDINATES: protein motif:HMM:NF014426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HYE13728.1"
                     /translation="MTARERAEIQSGEVASQSPEETFEAGRRVGERLRGGETLLLGGA
                     LGAGKTVFVKGLAAGLGLDPDEVSSPSFTLVNRHPEGRLVLYHLDLYRLAEGASAAHA
                     VDLDEILADERAVVVIEWAERMGRYPLPEPVWRVSIDGDGAEPRRIVIEEA"
     gene            2058..2489
                     /locus_tag="VD968_04725"
     CDS             2058..2489
                     /locus_tag="VD968_04725"
                     /inference="COORDINATES: protein motif:HMM:TIGR04191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrxA/BrxB family bacilliredoxin"
                     /protein_id="HYE13729.1"
                     /translation="MPYSEILIKPMREDLTRIGIEETRTPEQVEDAIKNTKGTLMVVV
                     NSVCGCAAGKARPGVAMAMAGEPRPDRAVTVFAGADVEATARAREHFAPYPPSSPQIA
                     LFKDGRLVFMLERHQIENRHAEEIAQELRQAFERHCAPVGA"
     gene            2553..3122
                     /locus_tag="VD968_04730"
     CDS             2553..3122
                     /locus_tag="VD968_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13730.1"
                     /translation="MSQLTLDTPLVALDKCGVERLGSATARKLALAVAQVSGKSDASA
                     VAVEDLLNYLPMRYEDRSNLARIEDLRDGVEASLELYVRVSGGFQVGKSRGPKAPPLF
                     IFEVTAGDPEKTGKPVVVWWFVSGRQAARIVAYYRQQFARGARFVAFGKWEWDARRNT
                     FALRLAKPDELEMLPGTFTPPENALIRIA"
BASE COUNT          515 a         1237 c         1186 g          481 t
ORIGIN      
        1 ggccccgccg gcggcgcggg agcctgcgct agcgcgcgca cagcccgccc cgccgcctcc
       61 acgtcgttca aatcctctgc gggcgcggca acaacggcgg cgacggcgcg gccctcgccc
      121 gcgcgctcct gacagccggc gcgcgcgttg acctcgtcct cttcgggcgt atcgaagact
      181 ctaagggcga cgcccgcact aacttcgaca tcgtgcgcgg gctcgcgggt gcgggcggca
      241 cggcgagccc ttcgtcgctc gcattcacgc agtgcgaagg ggcagcagag tgggaatcgc
      301 tcgcgggctc gcacgggagt tacgaagtag tcgttgacgc gctcttcggc acgggcctca
      361 cgcggccgct ggaaggcgct cacgcccgcg tcgtcgagca cattgacgcg ctccgctccg
      421 cgcgcatggg cggcgcacgc ccgctcatcg tctcgctcga cctgccttcg ggcctcgacg
      481 cggacagggc gcaacccata ggcccggccg tgcgcgcgga catcacggta accttcacgg
      541 cgccgaagcc cgcgaacgtg ctcccgcccg cctcgcgttt caacgggcgg ctctacacgg
      601 ccgacatagg ctcgccgcgg gcgctcctcg acgcctcgcc ttccagactt tttctgaccg
      661 aagctgaaga cgcccgtgca tggctcgaag cgacgcgcta cgcgcccggc tcctacaaga
      721 attcgcacgg ccacgctctc gtcgtcgcgg gctcgcgcga catgacgggc gcggccgtgc
      781 tctgcgcctc ggcggcaatg cgcgcgggag cggggctcgt gacgctcgcc gcgccggcct
      841 cgattctgcc ggctgtcgcg gcgcgccttc ccgcggaggt gatgactgcg ccgctgtccg
      901 aaacgcccgc gggcggcgtc gccttcgagg cgctgggcga ggtcgagaga ctctccgagc
      961 gcgcgacggt cgtcgccgtc ggctgcggcc tcacgcgcga gcacgagagc acccgccgct
     1021 tcgtgcgcga gctgatagcg cgccgcacga agcccgtcat agttgacgcc gacggcctga
     1081 acgcgctcgc gccgtggccg tcggagcttc gcgggacggc agacgcgccc gtcatcctca
     1141 ctccgcacga gggcgagatg cttcggctca tgggcgcgcg ggaccgctcg gcgctcgagg
     1201 accgcgcgcg cgcagtctcg gagttcgcgg cgggacaccg gctcgtcgtc gcgctcaagg
     1261 gcgagcgcac gctcatcgcg gcgccggacg gccgcgtgct cgtcaatgct acaggcaacc
     1321 gcggcctcgg cactgccggc tccggcgaca cgctgacggg gataatcgcc ggcttcaacg
     1381 cgcaagccta cgccacgctt aagggtcagg ccgacgccgt tgctgccacg gccgcggccg
     1441 tctatgtggg cgggctcgcg gcagacatcg cggccgccga ggtgggcgtg cgcgccctct
     1501 cggcctcgga cgtgcgcgag cgaatgggcg ccgccctgct cgcgctcgac ccggaaggag
     1561 agacgccttg acggcccgcg agcgcgcaga gattcagtcg ggcgaggtcg cctcgcaaag
     1621 ccccgaagag accttcgagg ccggccggcg cgtcggcgag cgtttgcgcg gcggcgagac
     1681 gcttctgctc ggcggcgcgc tcggcgcggg caagaccgtg ttcgtgaagg ggctcgccgc
     1741 cggtctcggc ctagacccgg acgaggtttc gagcccgtcc ttcacgctcg tcaaccgcca
     1801 cccggaaggg cgactcgtgc tctaccacct tgacctttac cggctcgccg aaggcgcttc
     1861 ggccgcgcac gccgttgacc tcgacgagat tctcgccgac gagcgcgccg tcgtcgtcat
     1921 cgagtgggcc gagcggatgg ggcgctaccc tctgcccgag cccgtctggc gcgtctcaat
     1981 tgacggcgac ggcgccgagc cccgccgcat cgtgatcgag gaagcctgaa accgaaaacc
     2041 gaaggagtga aacacccatg ccctactctg aaattcttat caagccgatg agggaagacc
     2101 tgacgcgcat aggcatcgaa gagacgcgga cgcccgagca ggtcgaggac gctataaaga
     2161 acacgaaggg gacgctgatg gtcgtcgtca actcggtctg cggctgcgcg gccggcaagg
     2221 cgcggcccgg cgtggcgatg gcgatggcgg gcgagccccg cccggatcgc gccgtcacgg
     2281 tcttcgccgg cgcggacgta gaggctacgg cccgcgcccg cgagcacttc gcgccctacc
     2341 cgccctcctc gccgcagata gcgctcttca aggacggccg cctcgtcttc atgctcgagc
     2401 gccaccagat cgagaacagg cacgccgagg agatagcgca ggagctccgc caagccttcg
     2461 agcggcactg cgcgcccgtc ggcgcctaga aggcggcagg cagaaagcag agggcagaca
     2521 gggcgccccc atcctgactg cctctctacc ctatgtctca actcacactc gacacaccgc
     2581 tggtcgcgct ggacaagtgc ggcgtggagc gcctgggctc cgcgacggcg cggaagctag
     2641 cgctggcggt cgcgcaggtg tcgggcaagt cggacgcctc ggccgtagcg gtagaagacc
     2701 ttttgaacta cctgccgatg cgctacgagg acaggtcgaa cctcgcgcgc atcgaagatt
     2761 tgcgcgacgg cgtggaggct tcgctggagc tttacgtgcg cgtgtccggc ggcttccagg
     2821 tcgggaagag ccgcgggccg aaggcgccgc cgctcttcat cttcgaggtc acggcgggcg
     2881 accccgagaa gaccgggaag cccgtcgtcg tatggtggtt cgtctccggg cggcaggccg
     2941 cccgcatcgt cgcctactac cgccagcagt tcgcgcgcgg cgcccgcttc gtggccttcg
     3001 gcaagtggga gtgggacgcg cgccgcaaca ccttcgcgct ccgcctcgcg aagcccgacg
     3061 agttggagat gctgcccggt accttcaccc cgcccgagaa cgcgctcata cgaatcgcct
     3121 agcaggccga gacgggcgcc gccgacggcg acggcacggg cgcgcctgtc gagggcgtag
     3181 ttgacgaaga cgccgtcgag gaggccaccg acccggctct ggcggcgatc cacgtaggcc
     3241 ggcgcgtccc cgtctatcgc aagctcggcg agttccgcac gaagcgcctg cgcgagatta
     3301 tgcacgcgct gctcgcgagg ctcgacgact cggccttcag ggagactctc ccgcccgagc
     3361 tgatagagcg gcagcggctc gcggcccgcg ccgacgccac gcggcgcata cactttccc
//
LOCUS       DASPKR010000169         2581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1315804, whole genome shotgun sequence.
ACCESSION   DASPKR010000169 DASPKR010000000
VERSION     DASPKR010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2581)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2581
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1315804"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VD968_04735"
     CDS             complement(<1..251)
                     /locus_tag="VD968_04735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13731.1"
                     /translation="MNAAGDAAKAPGRWRALALLAFAELLGMSLWFSASAVAPAISAE
                     WRLDETQAGWLTLSVQFGFVAGTLISALANLPDVLNSRRL"
     gene            complement(268..747)
                     /locus_tag="VD968_04740"
     CDS             complement(268..747)
                     /locus_tag="VD968_04740"
                     /inference="COORDINATES: protein motif:HMM:NF042610.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6789 family protein"
                     /protein_id="HYE13732.1"
                     /translation="MNGILAGALAGLAATVPMSAAMKLMHEQLPEHEQYPLPPRAVTM
                     EIAEEAGVKEQMTETEREAATWASHFGYGTACGALYGAVAGGSKINPALAGAGFGLAV
                     WAGSYLGWLPAAGILRPATEHPPRRSALMIAAHLVWGVTTGLLVSQLSDGRSRGSGR"
     gene            808..1485
                     /locus_tag="VD968_04745"
     CDS             808..1485
                     /locus_tag="VD968_04745"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HYE13733.1"
                     /translation="MSATGDGWRRAALWDVDGTLVDSSELHWLSWREALAAESFPITR
                     GQFAATFGQRNDEILRGYFGAGLPDAEVARVAEAKETLYRGLVRTRGLELLPGVGAWL
                     ERLRRAGWLQAVASSAPRANLEAIAEALGVREYFSAVVSAEDVERGKPDPQVFLAAAG
                     RLGVEPGACVVVEDAPAGTEAARRAGMRSIGVLSSHTQLRADVVVRTLEELDEDAFEK
                     LLEGGRG"
     gene            1494..2372
                     /locus_tag="VD968_04750"
     CDS             1494..2372
                     /locus_tag="VD968_04750"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HYE13734.1"
                     /translation="MRRTLFVVSALALLCAAGCAGAGRGAQSQEGEAARKSVEVKAPD
                     LAPYFKGRPGTFVLYDLKNDRYLRHDPKRAAERFPPFSTFKIPNSIIGLETGVIKDAE
                     FEMKWDSEKYPPSGDTAPFNTWWQDQTLRTAFKRSAVWYYRELALMVGEKRMKEMVSK
                     LGYGNEDISGGLDRFWLGSTLKISADEQVEFLKAFHQGRLPVSERSVGIVKEIMVIEE
                     TPEYKLSGKTGGGPLGERRFLGWLVGFLETKDNTHFFAIQIEGPTYVSIRDERLRLTK
                     QILTDLGLMKKAGAGQ"
     gene            2478..>2581
                     /locus_tag="VD968_04755"
     CDS             2478..>2581
                     /locus_tag="VD968_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000103948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13735.1"
                     /translation="MSLIDSVHAREILDSRGNPTVEAEVYLVSGEVGRA"
BASE COUNT          429 a          886 c          865 g          401 t
ORIGIN      
        1 agccgccgcg agttgagcac gtcgggcagg tttgcgagcg cggatatgag cgtccccgcg
       61 acgaagccga actgcacgga gagcgtgagc cagccggcct gcgtctcgtc gagccgccac
      121 tccgcggaga tggccggcgc gaccgcagag gccgagaacc aaagcgacat ccccagcagt
      181 tccgcgaagg cgagcagcgc gagcgcccgc cagcggccgg gcgctttggc agcgtcgccg
      241 gctgcgttca agacggcagc gctcccgtca acgcccactc ccgcggcttc gcccgtctga
      301 gagctggctg accagcagcc ccgtcgtcac gccccacacg aggtgcgcgg caatcatcag
      361 cgcgctgcgt cgcggcgggt gctcggtcgc gggccgcaaa atccccgccg ccgggagcca
      421 gcccaggtaa ctccccgccc agacggcgag gccgaagccc gcgccggcga gcgcggggtt
      481 tattttcgac ccgcccgcga ccgcgccgta gagcgcgccg cacgccgtcc cgtagccgaa
      541 gtgcgacgcc cacgtcgcag cctcgcgctc cgtctccgtc atctgctctt tgacgccggc
      601 ctcctcggct atctccatcg tcaccgcgcg cggcggcaaa gggtactgct cgtgctccgg
      661 caactgctcg tgcatgagct tcatcgccgc agacatcggc acggtcgccg caagccccgc
      721 gagcgcgccc gcgagaatcc cgttcatcgc ttcgcccctc cccctgttag ttgtcgcaag
      781 cgtcctatga ttttaaacta accccgcatg agcgcaacgg gagacggctg gcgccgcgcg
      841 gcgctgtggg acgtggacgg cacgctcgtg gattcgagcg agctgcactg gctctcctgg
      901 cgcgaggcgc tcgcggccga gagcttcccc ataacgcgcg ggcagttcgc ggccacgttc
      961 gggcagcgca acgacgagat tcttcgcggc tactttggcg ccggcctccc agacgcggag
     1021 gtggcgcgcg tggccgaggc gaaggagacg ctctaccgcg ggctcgtccg cacgcgcggc
     1081 cttgagcttc tgccgggcgt cggcgcgtgg ctcgaaagat tgaggcgcgc ggggtggctc
     1141 caggccgtgg cttcttcggc gccgcgcgcg aacctcgaag ccattgcaga ggcgctcggc
     1201 gtgcgggaat acttttcagc cgtcgtgtcg gccgaggacg tggagcgcgg caagcccgac
     1261 ccgcaggtct tcctcgccgc ggcaggccgc ctcggcgtag agcccggcgc gtgcgtggtc
     1321 gtcgaggacg cgcccgcggg caccgaggcc gcgcgacgcg ccggcatgcg ctcaatcggc
     1381 gtgctatcct cgcacacgca gcttcgcgcc gacgtggttg tgcgcacgct cgaagagctt
     1441 gacgaagacg ccttcgaaaa acttctcgaa ggcgggcggg ggtgatgatg aaggtgagaa
     1501 gaacgctgtt cgtggtgtcg gcgctcgcgc tcctgtgcgc cgcgggctgc gcgggggcgg
     1561 ggcgtggcgc gcagtcgcag gagggcgaag ccgcgcggaa gagtgttgaa gtcaaggcgc
     1621 ccgacctcgc cccttacttc aaaggcaggc cggggacttt cgtcctctac gacctgaaga
     1681 acgaccgcta cctgcgccac gacccgaagc gcgccgccga gcgcttcccg cccttctcga
     1741 ccttcaaaat cccgaactcg ataatcggcc tcgagaccgg cgtcataaag gacgcggagt
     1801 tcgagatgaa gtgggactcg gagaagtacc cgccctcggg cgacacggcg cccttcaaca
     1861 cgtggtggca ggaccagact ctgcgcacgg ccttcaagcg ctcggccgtc tggtactacc
     1921 gcgagcttgc gctgatggtc ggcgagaaga ggatgaagga gatggtctcg aagctcggct
     1981 acgggaacga ggacatctcg ggcggcctgg accgcttctg gctcggcagc acgctcaaga
     2041 tttccgcaga cgagcaggtc gagttcctca aggctttcca ccaggggcgc ctgcccgtct
     2101 cggagcgctc ggtcgggatc gtgaaagaga tcatggtcat agaggagacg cccgaataca
     2161 agttgagcgg taagaccggc ggcggccctc tcggcgagcg ccgcttcctc ggctggctcg
     2221 tcggcttcct cgagacgaaa gacaacacgc acttcttcgc catccagatc gaaggcccca
     2281 catacgtctc catacgcgac gagcgcctcc gcctcacgaa gcaaatcctc accgacctcg
     2341 ggctcatgaa gaaggcgggc gccgggcagt agcgattgcc cgccgcggtc ttgctaccgg
     2401 ctactgcctg ccgcatccct tgtgttagtc tttcagcgca aattcaaccc acagcaatcc
     2461 gggggcgcga ctcttttatg agcctgattg attccgtcca cgcgcgcgag attctggact
     2521 cgcgcgggaa cccgaccgtc gaggccgaag tttatctcgt aagcggcgag gtggggcgcg
     2581 c
//
LOCUS       DASPKR010000170         5476 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_539190, whole genome shotgun sequence.
ACCESSION   DASPKR010000170 DASPKR010000000
VERSION     DASPKR010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5476)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5476
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_539190"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1295
                     /gene="murC"
                     /locus_tag="VD968_04760"
     CDS             <1..1295
                     /gene="murC"
                     /locus_tag="VD968_04760"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR01082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HYE13736.1"
                     /translation="RRSEVTERLEKLGAKFMEGHAAENMLNSPHVVVRSTAVRDDNPE
                     VVEARRRSVPVIPRAEMLGELMRLKPHTVAVAGSHGKTTTTSMIATVLAHANLDPTVV
                     VGGVVGAMGSNARLGKSDLMVVEADESDRSFLMLTPTFAVVTNIDREHMDHYPDMMDV
                     RKCFADFVNKVPFYGASVLCLDDPHVQAVIPEVVRRRVTYGLSAQADIAAREVRYDKQ
                     FGSTFQVRRMGEPVGEVSLHVPGLHNIYNALAAIAVGLELEVPFATVAKALSEFAGVN
                     RRFHLKGEAAGVIVVDDYGHHPTEIRATLVAAKLGSAGRRMVVLFQPHRYSRTQDLME
                     EFARSFNNADVLMVTDIYAASEDPIEGVSAEALVEAVHRFGHKDARHVGSVDDAARAL
                     LEEVRAGDMVITLGAGNVFRVGDRLVELLREREAAGKE"
     gene            1292..2260
                     /gene="murB"
                     /locus_tag="VD968_04765"
     CDS             1292..2260
                     /gene="murB"
                     /locus_tag="VD968_04765"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: protein motif:HMM:NF010480.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HYE13737.1"
                     /translation="MTEARATIGAEQRDSLVEEIARRAGVRAERGRRFADLTSLRVGG
                     SIDWLLLPETEEQAAAVVGALEEAGLAWRVLGAGSNVLADDREHRYVVVSMREVKGEA
                     RFGGERVSVSAGFSLPRLCVEAARKGLAGIEGLGGIPGTVGGALWMNAGAYGQEIGQV
                     VETVRVARGGRVVEVPGSEVKWDYRHTSFKEGELLLGCTLKLRSDDPEAIKARMEEAK
                     QKRFSTQPHGARSAGCFFKNPPGSGQSTGKMIDEMGMKGERRGGALVSPVHANFIVTE
                     GEGARAADALAIAEEIRERFRREHGVELEYEVELWGADGEFKDERE"
     gene            2274..3386
                     /locus_tag="VD968_04770"
     CDS             2274..3386
                     /locus_tag="VD968_04770"
                     /inference="COORDINATES: protein motif:HMM:NF020067.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HYE13738.1"
                     /translation="MREQVITPRGGRGAAAGRGAKGGASASQRPAARRPRAAAKPSRS
                     KGLNWKRVLAFAPLALKLLLAVSFGALAFVGYRTAASASFFKVRSVDVVGAERASREE
                     IRQAVLRHSSDEGVWRADLEAIGRDVRALPWVRTAVVTRVLPDGLRVRVAERTGVVIA
                     RTSGGKLAWFDEEGVMLGPASPGEPHFFVRGLEESRSEEARRHNRERVAVALDLSRAW
                     EREGLARRVSEVNLADLNDVRVHLAGDDARIQVILGGEDYARRFRQALEKLEEVGRAQ
                     SDGQCVTYILMTRGRSATFGRRPCAEVNAVAPQPAAQAAAEGGATGDTAVPSSTEPAR
                     GAVQRAEKKPEKKSKPREGTEQKPRQDVASRPRRVG"
     gene            3424..4770
                     /gene="ftsA"
                     /locus_tag="VD968_04775"
     CDS             3424..4770
                     /gene="ftsA"
                     /locus_tag="VD968_04775"
                     /inference="COORDINATES: protein motif:HMM:TIGR01174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HYE13739.1"
                     /translation="MAKHVSHTVGLDIGTSRVTCIIGEPGDGGLVDVVGIGESEARGL
                     RKGVVVDPEAAVEAITRAVEEAERMSGLEAEEVAINLSGSHITSFNGQAIVAVSGRER
                     EPSHENGHGRRSSYGGHSSHMVVAGRDREITQDDVRRAIESASAMQLAAGREIVDRLP
                     QEFIVDDQDGINDPVGMIGARLAVKVHVVTSPVTARQNVINSVNRAGLVVGEMVLEQL
                     AAAEAALTDDDKEFGSALLDIGAETSGLVIYQRGAVQHTAVFALGGSHFTNDIAFGLR
                     TPIPEAEKIKRNHGCACSLSLSESERGELVEVPSVGGRPPRQLSRQILCDILQPRAEE
                     VLSHVADEIREAGWEGLLSSGVVLTGGGSLLNGMVEIAEQVFDAPVRLGYPERDRFGG
                     LIEDIQSPAWAAASGLCLMAQRAKSAEMRASAARAQAQGGFGALVSKFRNRFGSIF"
     gene            4915..5310
                     /locus_tag="VD968_04780"
     CDS             4915..5310
                     /locus_tag="VD968_04780"
                     /inference="COORDINATES: protein motif:HMM:NF012320.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13740.1"
                     /translation="MTPEGRPPGSGINIFIDDDPPITGARIKVIGVGGGGGNAVNRMI
                     EAGIEGIEFLVANTDLQALKRSRAPIKIQLGGKLTKGLGAGANPDIGRNAALEDTEKI
                     IEALEGADMVFVTTGLGGGTGTAAPSPIA"
BASE COUNT          940 a         1800 c         1947 g          789 t
ORIGIN      
        1 tgcggcgctc ggaggtgacg gagcggctcg aaaagttggg cgcgaagttc atggaagggc
       61 acgcggccga gaacatgctc aactcgccgc acgtcgtcgt ccgctcgacc gcggtgcgcg
      121 acgacaaccc ggaagtggtc gaggcccgcc ggcgctccgt ccccgtcatc ccgcgcgccg
      181 agatgctggg cgagctgatg cggctcaagc cccacaccgt cgccgtcgcc gggtcgcacg
      241 gcaagacgac gacgacctcg atgatagcca cggtcctcgc gcacgcgaat ttagacccga
      301 cggtcgtagt cggcggcgtc gtcggggcga tgggctcgaa cgcgcgcctg gggaagagcg
      361 acctgatggt cgtcgaggcg gacgagagcg accgctcgtt cctgatgctg acgccgacgt
      421 tcgcagtcgt cacgaacatt gaccgcgagc acatggatca ctaccccgac atgatggacg
      481 tgcggaagtg cttcgcagac ttcgtcaaca aggtgccgtt ctacggcgcg tccgtgctct
      541 gcctcgacga cccgcacgtg caggccgtca tccccgaggt cgtccgccgc cgcgtcactt
      601 acggattgag cgcgcaggcc gacatcgccg cgcgcgaggt gcgctacgac aagcagttcg
      661 gctccacgtt ccaggtgcgc cgcatgggcg agcccgtcgg cgaagtctct ctgcacgtgc
      721 ccgggctgca caacatctac aacgcgcttg cggccatagc cgtcgggctc gaattggaag
      781 tgccgttcgc gaccgtagcg aaggcgctct cggagttcgc gggcgtcaac cgccgcttcc
      841 acctcaaggg cgaggcggcg ggcgtcatcg tcgtggacga ctacggccac cacccgaccg
      901 agattcgcgc caccctcgtc gccgcgaagc tcggctcggc cgggcgccgc atggtcgtcc
      961 tgttccagcc gcaccggtac tcgcgcacgc aggacttgat ggaggagttc gcccgctcct
     1021 tcaacaacgc cgacgttttg atggtcacgg acatctacgc ggcgagcgaa gaccccattg
     1081 agggcgtctc ggccgaggcg ttagtcgagg ccgtccaccg cttcggccac aaggacgcgc
     1141 gccacgtcgg ctccgtggac gacgccgcgc gcgccctgct cgaagaggtc agggcgggcg
     1201 acatggtgat tacgctcggc gccggcaacg tcttccgcgt gggcgaccgg ctggtcgagc
     1261 ttttgaggga gagggaggcc gcgggcaaag agtgacggaa gcgcgagcca cgatcggggc
     1321 cgagcagcgt gactctcttg ttgaagagat cgcgcgccgg gcgggcgtgc gcgcggagcg
     1381 cggtcgtcgc ttcgccgatc tgacctcctt gcgcgtcggc ggctcgattg actggctgct
     1441 gctgcccgag acggaagagc aggccgcggc cgtcgtgggc gcgctcgaag aggccgggct
     1501 cgcgtggcgc gtgctcggag cgggcagcaa cgtcctggcc gacgaccgcg agcaccgcta
     1561 cgtcgtcgtc tctatgcgcg aggtgaaggg cgaggcccga ttcggcggcg agcgcgtgtc
     1621 ggtgagcgca gggttttcgc tcccgcgcct ctgcgtcgag gccgcgcgca aagggctcgc
     1681 cggcatcgag ggcctgggcg ggatacccgg cacggtcggc ggtgcgctct ggatgaacgc
     1741 gggcgcctac gggcaggaga tagggcaggt ggtcgagacc gtaagggtcg cgcgcggcgg
     1801 gcgggtcgtc gaggtgccgg ggagtgaggt caagtgggac taccgccaca cctctttcaa
     1861 ggagggcgag ctgctgctgg gctgcacgct caagctaagg tctgacgacc ccgaggcgat
     1921 caaggctcgg atggaggagg cgaagcagaa gcgtttctcg acgcagccgc acggcgcgcg
     1981 ctcggccggc tgcttcttca agaacccgcc ggggtcgggc cagagcacgg ggaagatgat
     2041 tgacgagatg ggaatgaagg gcgaacggcg cggaggcgct ctggtctcac ccgtccacgc
     2101 caacttcatc gtcaccgaag gcgagggcgc gcgcgcggca gacgcgctcg ctatcgccga
     2161 agagatacgc gagcgcttcc gccgcgagca cggagtcgag ctcgagtacg aggtagagct
     2221 ttggggcgcc gacggcgagt tcaaggacga aagggagtag tcgggtagtt cagatgaggg
     2281 agcaggtaat cacaccgagg ggcgggcgcg gggcggcggc cggcaggggc gccaaaggcg
     2341 gcgcctctgc gtcgcagcgc ccggccgcgc gccggccgcg cgcggcggcg aagccttcgc
     2401 gctcgaaggg cctcaactgg aagagggtgc tcgccttcgc gccgctcgcg ctcaagctct
     2461 tgctcgccgt ctcgttcggc gcgctggcct tcgtgggcta ccgcacggcc gcctccgcct
     2521 ccttcttcaa ggtcaggtcg gtggacgtcg tcggcgccga gcgcgcctcg cgcgaagaga
     2581 ttcggcaggc cgtgctccgg cactcttccg atgagggcgt ctggcgcgca gacctcgaag
     2641 ccatcggccg agacgtgcgc gcgctgccgt gggttcgcac ggccgtcgtc acgcgcgtgc
     2701 tgcccgacgg gctgcgcgtg cgcgtcgccg agcgcacggg cgtcgtcatc gcccgcacct
     2761 ctggcggcaa gctcgcgtgg ttcgacgagg agggcgtgat gctcgggccg gcctcgcccg
     2821 gcgagccgca cttcttcgtc cgcggccttg aggagtcgcg ctcggaagag gcccggcgcc
     2881 acaaccgcga gcgcgtcgcc gtcgccctcg acctctcgcg cgcgtgggag cgcgaagggc
     2941 tagcgcgccg cgtgagcgaa gtcaacctcg ctgacttgaa cgacgtgcgc gtccacctcg
     3001 cgggcgacga cgcgaggata caagtaatac tcggcggcga ggactacgcg cgccgcttcc
     3061 gccaggcgct cgaaaagctc gaagaggtcg gccgcgcgca gtctgacggc cagtgcgtca
     3121 catacatcct tatgactagg ggccgcagcg ccaccttcgg ccgccggccg tgcgccgagg
     3181 tgaacgccgt ggcgccgcag cccgccgcgc aggccgctgc cgagggaggc gcgaccggag
     3241 atacggccgt cccctcatca accgagcccg cgcgcggcgc cgtgcagcgg gccgagaaga
     3301 agcccgagaa gaagtcgaag ccgcgtgagg gaacagagca gaagccgcgg caggacgtgg
     3361 cctcgcggcc gcgccgggtc ggatgaggcg aaccttgtct gaagttggag gagcgagagc
     3421 ttaatggcta aacacgtgtc gcacaccgtc ggcctcgaca tagggacgag ccgcgtcacc
     3481 tgcatcatcg gcgagccggg cgacggcggg ctcgttgacg tggtcggcat aggcgagtcg
     3541 gaggcgcgcg gcctgcgcaa aggggtggtc gttgaccccg aggcggcggt cgaggcgata
     3601 acgcgcgccg tcgaggaggc cgagcgcatg agcgggctcg aggccgagga ggtagccata
     3661 aacctctccg gctcacacat cacgagcttc aacggccagg ccatcgtcgc cgtctccggc
     3721 cgcgagcgcg agccctcgca cgagaacggc cacggccggc gctcttccta cggcggccac
     3781 tcctcccaca tggtcgtggc ggggcgagac cgcgagataa cccaggacga cgtgcgccgc
     3841 gcaatcgagt cggccagcgc catgcagctc gccgccgggc gcgagatcgt tgaccgcctg
     3901 ccgcaggagt tcatcgttga cgaccaggac ggcatcaacg accccgtcgg catgataggg
     3961 gcgcgcctcg ccgtcaaagt ccacgtcgtc acgagcccgg tgactgcgcg ccagaacgtc
     4021 atcaactccg tcaaccgcgc cggcctcgtc gtcggcgaga tggtgctcga acagctcgcc
     4081 gcggccgagg ccgcgctcac cgacgacgac aaggagttcg gctccgccct cctggacata
     4141 ggcgccgaga cctcgggcct cgtgatctac cagcgcggcg ccgtgcagca cacggccgtc
     4201 ttcgccctcg gcggctcgca cttcacgaac gacatagcct tcgggctgcg cacgcccata
     4261 cccgaggccg aaaagattaa gcgcaaccac ggctgcgcgt gcagcctgag cctgtctgag
     4321 tcggagcgcg gcgagctggt cgaggtgcct tcggtgggcg ggcgcccgcc gcgacagctc
     4381 tcgcgccaaa tcctttgcga catactccag ccgcgcgccg aggaggtgct ctcgcacgtc
     4441 gccgacgaga tacgcgaggc cggttgggag gggctgctct caagcggcgt ggtgctgacg
     4501 ggcggcggct cgctcttaaa cggcatggtc gagatcgccg agcaggtctt cgacgcgccg
     4561 gtgcggctcg gctacccgga gcgcgaccgc ttcggcgggc tcatagagga catacagagc
     4621 ccggcgtggg ccgccgcttc gggcctgtgc ctgatggcgc agcgggccaa atcggcggaa
     4681 atgcgggcgt cggccgcgcg cgcgcaggcg cagggcggct tcggggcgct cgtctcgaaa
     4741 tttcgcaatc gtttcggtag tattttctga gaagatgttg tatgctgccg cgccagccgg
     4801 cacaatatct agccctcaat atattgttga ggtcggcgcg cacagcccaa gataaccgct
     4861 tgagaccttc ggggcggtca aaaagcttca gaaggagaga ggaacttgca aactatgaca
     4921 ccggaaggcc gtccgccggg cagcgggata aacattttca ttgatgacga cccgccgatc
     4981 accggggctc gcatcaaggt cataggcgtc ggcggcggcg gcggcaacgc cgtcaaccgc
     5041 atgatcgagg caggcataga gggcatagag ttcctcgtcg cgaacacaga ccttcaggcc
     5101 ctgaagcgct cgcgcgcgcc gatcaaaatc caactgggcg gcaaactcac gaagggcctg
     5161 ggcgccggcg caaacccaga catcgggcgc aacgccgcgc tcgaagacac cgagaagata
     5221 atcgaggcgc tcgaaggcgc cgacatggtc ttcgtcacga cgggcctggg cggcgggacg
     5281 gggacggccg ccccaagccc catcgcttaa ataacgctct aaccagtccc accatcaaga
     5341 aattatgcca gctcagggtt tcaaaagaga tcgtggcagg tcatggttga agattgggtt
     5401 accggcatgg cttcccgcac aggcacagcc ggaaccggcg gcgactaaca tgcgttaaag
     5461 cgcgcaagta tccccg
//
LOCUS       DASPKR010000171        10171 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1316261, whole genome shotgun sequence.
ACCESSION   DASPKR010000171 DASPKR010000000
VERSION     DASPKR010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10171)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10171
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1316261"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            217..378
                     /locus_tag="VD968_04785"
     CDS             217..378
                     /locus_tag="VD968_04785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13741.1"
                     /translation="MKDRKNFRVAALAFLYAVAFASALRRAPTPEAFRRAEARASLPA
                     AGQTEGAGA"
     gene            460..708
                     /locus_tag="VD968_04790"
     CDS             460..708
                     /locus_tag="VD968_04790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13742.1"
                     /translation="MPYLKDQCLVLDELSGYREAYDGGEGPPMKDGVTAWQGTRMLWR
                     AEAPPGAELQASGEKIFAVTKTSSKVLIEEVRVPQGAR"
     gene            722..1477
                     /locus_tag="VD968_04795"
     CDS             722..1477
                     /locus_tag="VD968_04795"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYE13743.1"
                     /translation="MSILIAEDNVAQRRYLRELLEREFAEHSPVIEAADGDEALKLAL
                     KERPRLCVFDIQMPRLSGVKAARSVWREFPQARIIFWTQFPHEIYINEIRKIVRSVEP
                     QPAYGFIHKNNPESRFLRFVAAVLEDGADMIDPAFKDSFKRPLLTEFEAEALYYLALG
                     LSNWAIARKCSLSLRGVESRLATLYEKLFVSTPEGTPHEAYDKLAYNMRTRAFFEALR
                     RGLINSDELEKASGDLEAWIERDRRRFLNEPKH"
     gene            1474..4887
                     /locus_tag="VD968_04800"
     CDS             1474..4887
                     /locus_tag="VD968_04800"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HYE13744.1"
                     /translation="MRKRKAKGGRRKAEGGRRSRRAALLPTAFCLLLTAFYLLPSRAQ
                     NETTGLHRWGAVTLFHGLPSDQVRAVAQGGDGVMWFGTDAGLARYDGRRIQTVTGEGL
                     AGRRFLALRFDRGGALWAGTDDGAFVRAADSNSFVAVKGTKGKQVTAVAAGEPGRALL
                     ATADGVVFDGRREGAGGAPSAEALGAGLTTATGKAQPLALTSVARVGDSVLVGTRGRG
                     LMTIGAEGEAKEVTGRPRAFFVRAIEHGEGGSVAFGAETSASDGGVFLAEGGKLARPS
                     KLAGATGNVTALAFAPGGELYAGTDGRGVFRYRAGQLVEHFTFSGTAGGLRSDSVNAV
                     FVDREGVVWFGTTRGVCRYDPRGVRAEQLSEETEGNFVRSLYRTRRGRMLAGTNRGLF
                     VGEEGGGAARWKAVEEMSGKTVYSISEDASGRVLVGTGVGLYVGLQPETRAGAPVRFA
                     PEEKAKPEDKSAAEPTEEKAGAAPQPKGEAGEGAAAEPKAAGSAETGEAAKEKGEAGA
                     EKDERAAVRKSAEPALSGSVRAIASFGGAVFVATYGRGVERFDGPGRRALVWPRQGED
                     ARGREVISLFADSARERLWVGTANAGAFYFDGSEVKQEPALGQLAASTVWGFGGGSDG
                     WLWVATNRGLYAFREGGGLVEVAPGVDARGVVAIPREGTQGAPGAWCATAGLGVLKVA
                     LDPEFGAVKSRLDTEHGLPTQSAFAVLPADGEGDVSRASLLIGTTRGLVRYEPGSLPP
                     VLKLTRVTASRAYQPEELRGGPLRLEYPQDGLVLDVSANASRTFPEQFQYAFVLRDSE
                     GRAIKRKLSHDSQFQADSLAAGTYRVTARAYSLDLVPSDPLELEFTVARAPFPRTILL
                     LSVLLALALVALLWAYFQHRRVVRSREELREANSQLAAARMQLANEAESERRRIAHDL
                     HDQTLADLRRLLLLTDEMQEQQQGAVAAPPALPPAAAAAATTTKAAGPSALRAEIESI
                     SQEIRRICEDLSPSVLENVGFAAALEFALASALAQLPPDCKFSYDFACDENLEERLRF
                     APGVQMQIYRIVQEAVSNVCRHAGATRVEMSVHLDGAGDFTLTLADDGRGFEPAGRKS
                     QPTGGRGLAGIKARAALIEAEVNWSRRPEHEGGGTVFTLRKRAAKGAEG"
     gene            complement(4932..5306)
                     /locus_tag="VD968_04805"
     CDS             complement(4932..5306)
                     /locus_tag="VD968_04805"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYE13745.1"
                     /translation="MMEETGGGAPTHGAGGRRRVSVAEALARLPGPGGERFAAVLEHG
                     SLVVEIYAPRGLDAQGPHTRDELYVVVEGRGEFLNGGARAEFAPGDVLFVPAGVEHRF
                     ENFTDDLVVWVVFYGPEGGEAA"
     gene            5453..6481
                     /locus_tag="VD968_04810"
     CDS             5453..6481
                     /locus_tag="VD968_04810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13746.1"
                     /translation="MLFRKRPAVVLGLLLMALSAFALTPSSASVQDRQPSAAQQPTNR
                     PPTITLQSDSQVVTLCPESESLSSPRVRLKAEGVSPDGNPLRYRWNVSGGRLEGDGTD
                     VVWDLSGAQPGVYTANVTVESGPSGADPLCTAFTSTKVVVRTCPPPRPVCPNVSIYCP
                     DIAQAGAPVTFTASISGGTPGITPTYNWRVSAGTILTGQGTPTITVDTAGLAGQPISA
                     TVEVMGYNLECRASCQSSVPSPPNPTRTDEFGEIQRDDEKARLDLFAIELQNSPGAQG
                     YIIAYGGRRTRYGDGNKRAQRARDYLVNTRGISSDRIVTVDGGQRETGSTELWIVPPG
                     ATPPRPRY"
     gene            6707..7111
                     /locus_tag="VD968_04815"
                     /pseudo
     CDS             6707..7111
                     /locus_tag="VD968_04815"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            complement(7355..8062)
                     /locus_tag="VD968_04820"
     CDS             complement(7355..8062)
                     /locus_tag="VD968_04820"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYE13747.1"
                     /translation="MQNEPRPLSKNHILSRLPPEDYERFRPHLEPVELRHSQILHEAG
                     EPIGHVYFPHRAMVSLISHTAAGESVEVGVVGFEGVAGISAVLGVDISPHEAMVQYPD
                     GGSRVKVGALREEFKRGGALHDLLLRYTQGLLLQTSQVAACNRLHTLAERLARWILMS
                     QDRCRCEDLPFTHEFLALMLGVRRPGVTEAAVSLQAEGYISYRRGHIKIIDREGLEQY
                     ACECYPVVRAEFDLLTA"
     gene            complement(8292..8660)
                     /locus_tag="VD968_04825"
     CDS             complement(8292..8660)
                     /locus_tag="VD968_04825"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE13748.1"
                     /translation="MSKKILVVDDTTDTRDLVHLYLKNAGYTVFLAADGGEGLYQAKM
                     DEPDLIITDMNMPNLDGFGMIRELRATEQFANLPIIALTAYGAEQLERAREAGANEAV
                     TKPMIMEELVELVNLLLDPP"
     gene            complement(8781..9623)
                     /locus_tag="VD968_04830"
     CDS             complement(8781..9623)
                     /locus_tag="VD968_04830"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE13749.1"
                     /translation="MSKVWFITGAGRGMGVDIAKAALAAGHKVVATGRNTDKVAQAVG
                     ESADLLVVKLDVTDPSDAEAAVKAAVDRFGRIDVLVNNAGNFYAGFFEEISPDDFRAQ
                     VETNLFGPVNVTRAALPVMRARRSGLVITISSLAGVVGQEFVSAYCASKFGVEGWMEA
                     LAPEVAPFGIRTMIVEPGFFRTELLTEESTKYPEPSIDDYAEKTRQTVTAWKGMNGLQ
                     GGDPAKLAKALIRLASQDEPPLRWAAGADAVQAVEQKAKDLLAQADAYRELSSSLAHD
                     DTSD"
     gene            complement(9900..9973)
                     /locus_tag="VD968_04835"
     tRNA            complement(9900..9973)
                     /locus_tag="VD968_04835"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9937..9939),aa:Arg,seq:acg)
BASE COUNT         1778 a         3412 c         3269 g         1712 t
ORIGIN      
        1 gagcctcggc gccgaactgc tcaacctgcg ctttcggccc ctctggcgtc ggattatcgt
       61 cgcgggcggg taggcgcgcg acgcgggagc caacagtccg cgcgccgaag cacacgcccc
      121 gcccacatgt gtctctccca acgtgcgcgc gtgtggatat ccacattgac cgccgccgcg
      181 ccgcgggcga ttgttcccct acgaggaggg ctggcgatga aagacaggaa aaacttccgc
      241 gtcgcagcgc tcgccttcct ctacgccgtg gccttcgcct ccgcgctgag gcgtgcgccg
      301 acgccggaag ccttcaggcg tgccgaggcg cgtgcctcgc tccctgccgc ggggcagacg
      361 gaaggcgcgg gcgcttgaga ctggtccaac acgcccgatc tcgagcggtg gaagagccgc
      421 aacaacggcg aggcgctacc gtttgactac ggcgcggtct tgccgtacct gaaagaccag
      481 tgcctcgtct tagacgagct ctccggctac cgcgaggctt acgacggcgg cgaaggcccg
      541 ccgatgaagg atggcgtcac ggcttggcaa ggcactagaa tgctctggcg cgcggaggct
      601 ccgcccggcg cagagttgca ggcgagcggc gagaagattt tcgccgtcac gaagacgagc
      661 agcaaagtcc taatcgaaga ggtacgagtg ccgcagggcg cgcgctgaga gcctcccgct
      721 tatgtcaatc cttatcgcag aagacaacgt cgcgcagcgg cgctacttga gagagctgct
      781 ggagcgcgag ttcgcagagc actcgcccgt gatagaggcc gccgacggcg acgaggccct
      841 caagctcgct ttgaaggagc ggccgcgcct gtgcgtcttc gacatacaga tgccgcgcct
      901 ctctggcgtc aaggcggccc gtagcgtgtg gcgcgagttc ccgcaggcgc gcatcatctt
      961 ctggactcag ttcccgcacg aaatttacat aaacgagatt cgcaagatcg tgcgctccgt
     1021 cgagccgcag cccgcatacg gcttcataca caagaacaac cccgagtcgc gcttcctgcg
     1081 cttcgtcgcc gccgtcctcg aagacggggc cgacatgatt gaccccgcgt tcaaggactc
     1141 cttcaagcgg ccgctcctca ccgagttcga ggccgaggcg ctctactacc tcgcgctggg
     1201 cctgtctaac tgggcgattg cgcgcaagtg ctctctctcc ttgcgcggcg tcgagagccg
     1261 tctcgccacg ctctacgaga agctcttcgt ctccacgccc gaaggcacgc cgcacgaggc
     1321 ttacgacaag cttgcctaca acatgcgcac gcgcgccttc ttcgaggcgc tgcgccgcgg
     1381 cctcatcaac tccgacgagt tggagaaagc ctccggcgac ctcgaagcct ggatagagcg
     1441 cgaccgcagg cgattcctca acgagccaaa gcattgagaa agcggaaggc aaagggcgga
     1501 aggcggaagg cggaaggcgg aaggcggtca aggcgcgccg cgctgctgcc gaccgccttc
     1561 tgccttctgc ttactgcctt ctatctcctg ccttcccgcg cgcagaacga gacgacgggc
     1621 ctgcaccgct ggggcgccgt cacactcttc cacgggctgc cgagcgacca ggtgcgcgcc
     1681 gtcgcgcaag gcggcgacgg cgtgatgtgg ttcggcacgg acgcggggct cgcgcgctac
     1741 gacggccgcc gcatacagac cgtgacgggc gaggggctcg ccggccgtcg cttcctcgcg
     1801 ctgcgcttcg accggggcgg cgcgctctgg gcggggacgg acgacggagc gttcgtgcgc
     1861 gcggccgact ccaactcttt cgtcgccgtc aaggggacga agggcaagca ggtgacggcc
     1921 gtcgccgcgg gcgagccggg ccgcgcactg ctagcgaccg ccgacggcgt ggtcttcgac
     1981 ggccgccgcg aaggcgcggg cggcgcgccc tcggccgagg cgttgggcgc ggggctcact
     2041 accgccacgg gcaaggctca gccgctcgcc ttgactagcg tcgcgcgcgt cggcgactcc
     2101 gtgctcgtag ggacgcgcgg ccgcggcctt atgacaatcg gcgccgaagg cgaggcgaag
     2161 gaggtcacgg ggcggccgcg cgcgttcttc gtgcgggcga ttgagcacgg cgagggcggc
     2221 tcggtcgcct tcggcgcgga gacttccgcc tcggacggcg gcgtcttcct cgcggaggga
     2281 ggcaagctcg cgcgcccctc gaagctcgcc ggcgccacgg gcaacgtcac cgcgctcgcg
     2341 ttcgcgcccg gaggcgagct ctacgccggc acggacggcc gcggcgtctt ccgctaccgg
     2401 gcggggcagc tcgtcgagca cttcaccttc tcggggacgg ccgggggctt gcgctccgac
     2461 agcgtcaacg ccgtcttcgt tgaccgggag ggcgtcgtct ggttcggcac tacgcgcggc
     2521 gtctgccgct acgacccgcg cggcgtgcgc gccgagcagc tctcggagga gaccgagggc
     2581 aacttcgtgc gctcgctcta ccgcacgcgc cggggccgga tgctggcggg gacgaaccgc
     2641 ggcctcttcg tcggcgaaga gggcggcggg gcggcgcgct ggaaagcggt cgaagagatg
     2701 tcgggcaaga ccgtctattc gatctcggag gacgcgtcgg gccgcgtgct cgtcggcacg
     2761 ggcgtcggcc tctacgtcgg cctgcaaccc gagacgcggg ccggcgcgcc cgtcaggttc
     2821 gcgcccgagg agaaggcgaa gccggaagac aagtcggccg cagagccgac cgaggagaag
     2881 gccggcgcgg cgccgcagcc gaagggcgaa gctggcgaag gcgcagccgc cgagccgaag
     2941 gccgccggct cggctgagac cggcgaggcc gcgaaagaga agggcgaggc gggcgcagag
     3001 aaggacgaga gggcggccgt caggaagtcg gccgagccgg cgctgagcgg gagcgtgcgc
     3061 gcgatagcct ctttcggcgg cgccgtcttc gtcgcgacct acgggcgcgg cgtcgagcgc
     3121 ttcgacggcc ccggccgccg cgccctcgta tggccccggc agggcgagga cgcgcgcggc
     3181 cgcgaggtca taagcctttt cgcggactcg gcgcgcgaac gtctctgggt ggggacggcc
     3241 aacgcgggcg cgttctactt cgacgggagc gaggtcaaac aggagccggc gctcgggcag
     3301 ctcgcggcga gcacggtctg gggcttcggc gggggctcgg acggctggct ctgggtcgct
     3361 acgaaccgcg gcctctacgc cttccgagaa ggcggcgggt tggtggaggt cgcgcccggc
     3421 gttgacgcgc gcggcgtcgt cgccatcccg cgcgaaggca cgcagggcgc gccgggcgct
     3481 tggtgcgcca ccgcggggct cggcgtccta aaggtcgcgc tcgaccctga gttcggcgcc
     3541 gtcaagtcgc gtctagacac cgagcacggc ctgcctacgc agagcgcatt cgccgtgctg
     3601 cccgcggacg gcgagggcga cgtgagccgc gcttcgctcc taataggcac gacgcgcggc
     3661 ctcgtccgct acgagccggg cagcctcccg cccgtgctaa agctcacgcg cgtcacggcc
     3721 tcgcgcgcgt accagcccga ggagctgcgg ggcggccccc tgcggctcga atacccgcag
     3781 gacgggctcg tgctcgacgt gtctgcgaac gcctcgcgca ccttccccga gcagttccag
     3841 tacgccttcg tgctgcgcga ctcggagggg cgcgcaatca agcgcaagct ctcgcacgac
     3901 tcgcagttcc aggccgactc gctcgcggcc ggcacctacc gcgtcacggc ccgcgcttac
     3961 tctttagacc tagtgccttc cgaccccctt gagcttgaat tcaccgtcgc gcgagcgccg
     4021 ttcccgcgaa cgatactcct gctctcggtg ctcttagcgc tcgcgctagt cgcgctcctg
     4081 tgggcctact tccagcaccg cagggtcgtg cgcagccgcg aggagctgcg cgaggccaac
     4141 agccagctcg cagccgcgcg catgcagctc gcgaacgagg ccgagtccga gcgccggcgc
     4201 atcgcgcacg acctccacga ccagacgctc gcagacctcc gccgcctgct cctactgacc
     4261 gacgagatgc aggagcaaca gcagggcgcc gtcgccgcgc cgcccgcgct cccgcccgcg
     4321 gcggcggccg cggccacgac gacgaaggcg gccggcccct cggccctgcg cgccgagata
     4381 gagtccatct cgcaggagat tcgccgcatc tgcgaagacc tctcgccctc ggtcttggag
     4441 aacgtaggct tcgcggcggc gctggagttc gcgctcgcct ccgctctggc gcagctcccg
     4501 cccgactgca agttctccta cgacttcgcg tgcgacgaga accttgaaga gcggctgcgc
     4561 ttcgcgcccg gcgtgcagat gcagatttac cggatagtgc aggaggccgt gagcaacgtc
     4621 tgccgccacg ccggggctac gcgcgtcgag atgagcgtgc atctcgacgg cgcgggcgac
     4681 ttcacgctca cgctcgccga cgacgggcgc ggcttcgagc cggccggccg gaagtcgcag
     4741 ccgacgggcg gccgcggcct cgccggcata aaggcccgcg ccgccctcat cgaggccgaa
     4801 gtaaactggt cgaggcgccc cgagcacgaa ggcggcggca ccgtcttcac cctccgcaaa
     4861 cgcgcggcga aaggcgcgga gggttgacga cagcagcgtt gtcgtcaacc ctccctcctt
     4921 aacccgaaat cctaagccgc ctcgccgcct tcggggccgt agaagacgac ccacacgact
     4981 aagtcgtcgg taaagttctc gaacctgtgc tcgacgccgg ccggcacgaa gagcacgtcg
     5041 ccgggcgcga actccgcgcg cgcgccgccg tttaagaact cgccgcgccc ctcgacgacg
     5101 acgtaaagct cgtcgcgcgt gtgcggcccc tgcgcgtcaa ggcccctggg cgcgtaaatc
     5161 tcgacgacca ggctgccgtg ctcaaggact gccgcgaacc tctcgccgcc cggccccggc
     5221 aggcgcgcga gcgcctccgc taccgagacc ctgcgcctcc cgccggcccc gtgcgtgggc
     5281 gctccgccgc cggtttcttc catcattttt cgcctcacct ccctagattt gcgcccgcgg
     5341 cttggaaacg gggcgggatt ggcagttttc tgtcggtgta aaaataccgt tgtggcggtt
     5401 acggttttgg tttaccctgt cggccggcaa ataacaactt aaggagtcgg acatgctctt
     5461 tcgtaagcgc cccgcagtcg tcctcgggct gctgctcatg gcactatcgg ccttcgcgct
     5521 gacgccctcg agcgcctcgg tgcaagaccg ccagccttcg gcagcgcagc agccgaccaa
     5581 ccgcccgccg accatcacgc tccaatcgga ctcgcaggtg gtcacgctct gccccgagtc
     5641 agagagcctg tcgagcccgc gcgtgcgcct caaggcagag ggcgtgagcc cggacggcaa
     5701 cccgctgcgc taccgctgga acgtctcggg cggcaggttg gagggcgacg gcaccgacgt
     5761 cgtttgggac ttgtcgggcg cgcagcccgg cgtctatacg gccaacgtca cggtcgagag
     5821 cggcccgtcg ggcgcagacc cgctctgcac ggccttcacc tcgacgaagg tggtcgtgag
     5881 aacctgcccg ccgccgcgcc ccgtatgccc gaacgtctcg atctactgcc ccgacatcgc
     5941 gcaggccggc gcccccgtca cgttcaccgc ctccatcagc ggcggcacgc ccggcatcac
     6001 gcccacgtac aactggagag tctccgccgg cacgatcctg actggtcagg ggacgcccac
     6061 catcacggtt gacacggccg gcctcgcggg ccagcccatc agcgcgaccg tcgaggtgat
     6121 gggctacaac ctggagtgcc gtgcctcctg tcaaagctct gtgccgtcgc cgcccaaccc
     6181 gacgcgcacg gacgagttcg gcgagattca gcgcgacgac gagaaggccc gcctcgacct
     6241 cttcgcaatc gagctacaga acagccccgg cgcgcaaggc tatatcatcg cctacggcgg
     6301 ccgccgcacg cgctacggcg acggcaacaa gcgcgcccag cgcgcccgcg actacctcgt
     6361 caacacccgc ggcatcagct ccgaccgcat cgtgaccgtt gacggcggtc agcgcgagac
     6421 gggctccacg gagctctgga tcgtcccgcc gggcgcgacg cccccgcggc cgaggtatta
     6481 gcaaagcacg gctaacaatg aaaggctcgc cgacccgagg aggtcggcga gccttttaac
     6541 ttatttccac cttgccttac ctcaccggca agtcgccgcc ctcgtcgagg acttccggcc
     6601 aaacttcccg ccccgcgccg tcgtccccgt cggcctcgcc cgcgaggcgg acgcgcaacg
     6661 cccaggcggg gagtggtatt tcggagagcc taaaacggcg cgcagccgcc gcaatatccc
     6721 tttacccgcg tccgtccgta ccgcgttaac agagcacagg cggcgacaag gtgcggagag
     6781 actaaaggca ggctccgcat atcagaataa caaccttgtc tttgccatgc gcgacggccg
     6841 gcccgttctg ttgcgcacgc tggacaggtt gcatttcaag ccgactttga agcgcgccaa
     6901 gctgccagag acgatccgtc tgtacgacct gcgccacacc tgcgcgacac ttctcctatc
     6961 ggcgggcgag catccgaagg tagtcagcga aaggctggga cacaccagta tcacgctcac
     7021 gctggacgtt tacagtcacg tgctgccgac tatgcaggag gcggcgtcac aaaaaatgga
     7081 gggcatcttg ttcggcagta aggtgagatg aatttccgcc aattcaacat tacagcgcga
     7141 tttcaccggt aataaataac gccgagcgaa ataaagccta gcaatctatt atcagtagat
     7201 tgataggctt ttaaagcgtt tctgtagcgg ctaaactttg aaagccacct ccgtttagct
     7261 cttatcaatt ccacacttga gttattttgt ggaataggta gctactacgg atttacacta
     7321 cacgcgtctt gtgcctagca acgccactta gaactcaggc cgtcaggagg tcgaactcgg
     7381 ccctcaccac ggggtagcac tcgcaggcgt attgctccag cccttccctg tctatgatct
     7441 tgatgtggcc ccgccggtag ctgatgtagc cttcggcctg gaggctgacc gcggcctcgg
     7501 tgacgcccgg gcgcctgact ccaagcatca gcgcgaggaa ctcgtgcgtg aacggcaggt
     7561 cttcacaccg gcagcggtct tggctcatca atatccagcg cgccagccgc tccgccagcg
     7621 tgtgcaggcg gttgcaggcg gcgacctgcg aggtctgcaa cagcagcccc tgcgtgtagc
     7681 gcaggaggag gtcgtgtagc gccccgccgc gcttgaactc ctcgcgcagc gccccgacct
     7741 tcacccgcga cccgccgtca gggtactgga ccatcgcctc gtgcggggag atgtccacgc
     7801 ctaagaccgc cgagatgccg gccacgccct cgaagccgac gacgccgacc tcgaccgact
     7861 cgcccgcggc cgtgtgcgag atcagagaga ccatcgcgcg gtgcgggaag tagacgtgcc
     7921 ctatgggctc gccggcttcg tgcaggattt ggctgtggcg cagctcgacc ggctccaggt
     7981 gtggccggaa gcgttcgtag tcttcgggcg gcaagcggga gaggatgtgg tttttgctaa
     8041 gcgggcgagg ttcattctgc atcgggcttc tccagagttt ccggtcgcgc gtgtgaacgc
     8101 gagttgacgg cacgaggaga aggctgtata ggcccgtccc gatgtcgaat gtttggttgt
     8161 caaaagatca gcgggcaagc tgtatgagag gagtatacac ccccccctac aaaattgata
     8221 cccagcggcc gtacgctaca gactatgata cggcatcgga ttgtgggaga agcgcataac
     8281 actggcggac gttacggcgg atcgagtaac aagtttacaa gctcaaccag ttcttccatg
     8341 atcattggct tagtcacggc ctcgttagcc ccggcctccc tcgccctttc gagttgttct
     8401 gccccgtatg cggtcagggc aattattggc aggttggcga attgttctgt cgccctcagt
     8461 tctcgaatca tgccgaagcc gtccaggttc ggcatattca tatcggtgat gattaaatca
     8521 ggctcatcca tcttcgcctg atatagcccc tcgcccccgt ccgccgccag gaagaccgta
     8581 tagcccgcgt ttttcaaata caggtgcact aagtcgcggg tgtcagtggt gtcgtcaacg
     8641 acaaggattt tcttggacaa gctactccct tatagttatg acgagtgttc cttcactttt
     8701 agcgccgtcc acagcaaaac tcaaccctta tttgaggcag tgcataattc cactgaaagg
     8761 ttccttcgtg gaatgagcga ctagtcgctc gtgtcgtcgt gcgcgagcga tgaggacagt
     8821 tcgcggtagg cgtcggcctg ggctaacagg tctttggcct tctgttcgac tgcctggaca
     8881 gcatcggcac ctgcggccca gcgaagcgga ggctcatcct gactcgcaag ccggatgagc
     8941 gccttggcga gcttggcggg gtcaccgccc tgcaagccgt tcattccttt ccaggcggta
     9001 acggtctgcc tagttttctc ggcgtagtcg tctatcgagg gttcggggta cttcgttgac
     9061 tcctccgtga gcaactcggt gcggaagaag cccggctcga cgatcatcgt gcggatgccg
     9121 aacggcgcga cctcgggggc gagcgcctcc atccagccct cgacgccgaa cttcgacgcg
     9181 cagtaagcgg aaacgaactc ctgcccgaca accccggcga gcgaggaaat tgtaatgacg
     9241 agccccgagc gccgggcgcg catgacgggt agcgcggcgc gggtgacgtt caccgggccg
     9301 aacaggttgg tctcgacctg cgcccggaag tcatcggggc tgatctcctc gaagaacccg
     9361 gcgtagaagt tgccggcgtt gtttacaagc acatcaatgc ggccaaatcg gtcaacagca
     9421 gccttaaccg cagcttcggc gtcggaaggg tcggtaacgt ccagcttcac aactaacaag
     9481 tccgcggatt ctccaaccgc ctgtgccacc ttgtcagtat tgcgacccgt agcgaccacc
     9541 ttgtggcctg cggccaaagc agccttagca atatcgacac ccataccgcg ccctgcgcct
     9601 gtaataaacc aaactttgct catatttgta cccctttcct tgcaacctta tcagatttca
     9661 actcaacaag cgttaccggc aacaaatccc cactgtaaag tccaatgtgt tattccacaa
     9721 aaaggttctt ttgtggaatt caggcgcttc acatcttacg acactttatt acccttgatc
     9781 tgaacaaact atagcaatgt gtgctgcggt aatctgtcgc tttgaagttg gcacactata
     9841 ggcacacaaa acgggaaagg gcagccgcgt ggctgccctt aacttattga aactattaat
     9901 gcacccggca tgactcgaac atgcgacctt ctgattcgta gtcagacgct ctatccaact
     9961 gagctacggg tgcgaattgt tgtcggaaag aagtttacgg gcgggcctgt tgagtgtcaa
    10021 gcgggtgtgt catcgggcta agggctcacc gcgcgaagta gccggggcgg gagcgggcta
    10081 tggcgtcggg gcgcgtgact tggacgctta tggcgcgcca cttgccgtcg cgccggcccg
    10141 tgttcgacga ctggtatgtg atgctgtaga g
//
LOCUS       DASPKR010000172         3849 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_668545, whole genome shotgun sequence.
ACCESSION   DASPKR010000172 DASPKR010000000
VERSION     DASPKR010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3849)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3849
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_668545"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2133)
                     /locus_tag="VD968_04840"
     CDS             complement(<1..2133)
                     /locus_tag="VD968_04840"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF014563.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobN"
                     /protein_id="HYE13750.1"
                     /translation="MKVTFLYVGTSLLAPLRQAEGEINRRHSLGLRVAAHNLGAPLAA
                     EEWGAIERELGESSVVFVTHVTDGENASRLIRLLRHEGGDGRAVIVINCMPELMRLTR
                     MGRLSFGGSRAQGEEDGRARRLLKGVGGWMGRQARPLGRGSRHTQYLKLVERMPALLR
                     LVPGAGRLGDAKHYLQLFCYFLQPTPANVRSMLLYALKHYGAGARLARVAVPPPESVP
                     AVGAYHPDAPSVFESFESYRAWHDRRARRQKTPALDPSNTIGLLLMRTHVVSDSRRHY
                     DALIRAVEREGLTVLPVISTFMDNRDACEQFFVEAAGGRDDERAAVERGAKRSRVSQI
                     VSLTGFSFVGGPAMNDSEAAVNFLRGLNRPLRSAVSLDTQTVEAWQDSWTGLNPVQAG
                     MQVAIPEIDGATEPFVYGGMPAGGPEPVAIEERCRRVARRLRRWNRLQSAPRGEIKLA
                     LVLFCFPPNKGNIGTAADLDVFPSVFETLRRLKSEGYAVKLPAGADELRELMLGGNSE
                     SFGSVANVAYRMSVEEYRRLCPFVSEIEKEWGAAPGKINTFGRELLIQGVRLGNVLVA
                     VQPTFGYEGDPMRLLMSRGGAPHHGFAALYTYLEKVFRADAVVHVGTHGALEFMPGKQ
                     VGLSEGCWPDRLIGELPHLYLYSVNNPSEGSIARRRSYAELISYLTPPVEDAGLYRDL
                     AALKELLLAYRQTADETERQRLYEAIEAK"
     gene            complement(2148..>3849)
                     /locus_tag="VD968_04845"
     CDS             complement(2148..>3849)
                     /locus_tag="VD968_04845"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF014563.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cobaltochelatase subunit CobN"
                     /protein_id="HYE13751.1"
                     /translation="DRRVLELYEQVLEVERRLIPTGLHVFGRAPGADECADLLRMVAS
                     FDRPELGARALPDLVAEGLRLGAYEELLRARDEGGLLRRERVEAVVREAVSVFLDEGA
                     AAAARRLESAARVPAAESAKVFGLLTKVLEGLKGSGELDGLVLALRGEYVEPGPGADI
                     VQNPSILPTGRNTHAVNPYTVPSHSAYARAERVVKSLLERHRSEHGRLPRAMALVLWG
                     LDNIKTQGEGVAQALWLLGVRPVRDSLGRVTEVEPIPLERLGRPRIDVVMTVSGIFRD
                     LFGATMLLLDKAVRSVASLDEPPEQNYVRANVLAESAAGGVGFEEAALRVFSNAPGSY
                     GANVNFMVMDSQWEHSGALGDLFMTRKCFAYGRGRDGRAVEGREARAALSRALSRVEA
                     TYQNVDSFEIGITDVDHYFEYLGGVTNAVEREAQARPAVYLSDALSRDARVRSLPEMV
                     RLETRAKTLNPKWYEGMLSHGFRGVAEIESHVTNTFGWSATTDAVDDWVYEEVARTFV
                     LDEGMIERLSRLNPHSARSLVARLLEAEGRGFWEAEAAVVERLREIFSLLEDRVEGIA
                     "
BASE COUNT          590 a         1340 c         1318 g          601 t
ORIGIN      
        1 cttcgcctcg atggcctcgt agagccgctg ccgctccgtc tcgtccgcgg tctggcggta
       61 ggcgagcagc agttctttga gcgcggccag gtcgcggtag agtccggcgt cttcgaccgg
      121 gggcgtcagg taagagatca gttcggcgta agagcggcgg cgcgcgatcg agccttccga
      181 agggttgttg acgctgtaga ggtagaggtg cggcagctcg ccgatcagac ggtcgggcca
      241 gcacccttcc gaaagtccga cctgcttgcc cggcatgaac tccagcgcgc cgtgcgtgcc
      301 gacgtggacg accgcgtccg cccggaagac cttttccaga taggtgtaga gcgccgcgaa
      361 gccgtggtgc ggcgctccgc cgcgcgacat cagcaggcgc atggggtcgc cctcgtagcc
      421 gaaggtcggc tgcacggcga ccagcacgtt ccccaggcgc acgccctgaa tcagaagctc
      481 tctgccgaac gtgtttatct taccgggcgc cgcgccccac tccttctcaa tctccgaaac
      541 gaaggggcag agccttctgt actcttcgac gctcatccgg tatgcgacgt tcgcgacaga
      601 accgaagctc tcggagttgc cgcccagcat cagctctcgc agctcgtcgg cgcccgcggg
      661 cagcttgacc gcgtagccct ccgacttgag ccggcgcagc gtctcgaaga cgctcgggaa
      721 aacgtccagg tcggcggccg tgccgatgtt gcccttgttg ggcgggaagc agaagaggac
      781 gagcgcgagc tttatctcgc cgcgaggggc cgactgtagc ctgttccatc ggcgcaggcg
      841 gcgcgcgacg cggcggcagc gctcctctat cgcgactggc tcggggccgc ccgcaggcat
      901 tccgccatag acgaatggct cggtcgcgcc gtcaatctcg gggatggcga cctgcatccc
      961 ggcctgaacg gggttcaggc ccgtccacga atcctgccac gcctcgacgg tctgcgtgtc
     1021 aaggctgacg gcggagcgca gcggccggtt caggccgcgg aggaagttga cggcggcctc
     1081 gctatcgttc atcgccggcc cgcccacgaa gctgaagccc gtgagcgaga ctatctggct
     1141 cacgcgcgag cgcttcgctc ccctctcgac ggcagccctc tcgtcatccc tccctcccgc
     1201 ggcttcgacg aagaactgct cgcacgcgtc gcggttgtcc atgaaggtcg agatgacggg
     1261 cagcacagtc aggccctcgc gctcgacggc gcggatgagc gcgtcgtagt gcctgcgcga
     1321 gtcgctcacg acgtgcgtgc gcatgagcag caggccgatt gtgtttgagg ggtcgagcgc
     1381 gggcgtcttc tgccggcgcg cgcggcggtc gtgccacgcg cggtacgact cgaacgactc
     1441 gaagaccgag ggcgcgtccg ggtggtacgc gcccacggcc gggacggact cgggcggcgg
     1501 aaccgcgacg cgcgcgaggc gtgcgcccgc cccgtagtgc ttcagggcgt agaggagcat
     1561 cgagcggacg ttcgcgggtg tgggctgtag gaagtagcag aagagttgca ggtagtgctt
     1621 cgcgtcgccg agccgcccgg cgcccggcac gagccggagc agcgccggca tgcgctcgac
     1681 gagtttgagg tactgcgtgt gccgcgagcc gcggccgagc ggccgcgcct gtctgcccat
     1741 ccagccgccg acacccttga gcagccgccg cgcccgccca tcctcttccc cttgcgcccg
     1801 gctcccgccg aaactcagtc gccccatcct cgtcagccgc atcaactccg gcatgcagtt
     1861 gatgacgatg acggccctgc cgtccccgcc ttcgtgcctg agcagccgaa tgaggcgcga
     1921 ggcgttctcg ccgtcagtca cgtgcgtgac gaagaccacg gacgactcgc cgagctcgcg
     1981 ctctattgcc ccccactctt ccgcggcgag cggcgcgccg aggttgtgag ccgccacgcg
     2041 taggcccagc gagtgccggc ggttaatctc gccttccgcc tgcctgagcg gcgccagcaa
     2101 actcgtcccg acgtatagga aggtgacttt catctcgcgc tgagccttca ggcgatcccc
     2161 tcgacgcggt cttcgagcag ggagaagatt tcgcgcaggc gctcgacgac ggccgcctcc
     2221 gcctcccaga acccgcgccc ctcggcttcc aggagccgcg cgacgagcga gcgggccgag
     2281 tgcgggttca ggcggctcag gcgctcgatc atcccttcgt ctaagacgaa ggtgcgcgcg
     2341 acctcctcat agacccagtc gtccacggcg tctgtcgtag cgctccagcc gaaggtgttc
     2401 gtgacgtggc tctcgatctc ggcgacgccg cggaagccgt gacttaacat cccctcgtac
     2461 cacttcgggt tcaaggtctt ggcgcgcgtc tcaaggcgca ccatctcggg gagcgagcgg
     2521 acgcgggcgt cccgcgagag ggcgtcggag agatagaccg ccgggcgggc ttgcgcctcg
     2581 cgctcgacgg cgttcgtgac gccgccgagg tactcgaagt agtggtcaac gtccgtgatg
     2641 cctatctcga acgagtcaac gttctggtag gtcgcctcga cgcgcgagag cgcgcgtgaa
     2701 agcgcggcgc gcgcctcgcg cccctcgacc gcgcgcccgt cgcgcccgcg cccgtaggcg
     2761 aagcacttgc gcgtcatgaa gaggtcgccg agcgcgcccg agtgctccca ctgcgaatcc
     2821 atcaccatga agttgacgtt cgcgccgtag ctgcccggcg cgttcgagaa gacgcgaagc
     2881 gccgcctcct cgaagccgac gcccccggcc gccgattcgg ccagaacgtt ggcgcgcacg
     2941 tagttctgct ccggcggctc atcgagcgag gcgaccgagc gcacggcctt gtcgagcagg
     3001 agcatcgtcg cgccgaagag gtcgcggaat atgcccgaga cggtcatcac aacgtctatg
     3061 cgcgggcggc cgagccgttc gagcggtatg ggctcgactt cggtcacgcg cccgagcgag
     3121 tcgcgcacgg gccggacgcc caacagccag agcgcctgcg cgacgccctc gccctgcgtc
     3181 ttgatgttgt cgaggcccca gagcaccagc gccatcgcgc gcggcaggcg gccgtgctcg
     3241 gagcggtggc gctcgagcag acttttgacg acgcgctcgg cgcgcgcgta ggccgagtgc
     3301 gaggggactg tgtaagggtt gacggcgtga gtgttcctgc ccgtcgggag tatggaaggg
     3361 ttttggacta tgtccgcgcc ggggccgggc tcgacgtact cgccgcgcag cgcgagcact
     3421 aggccgtcaa gctcgccgct ccctttcagc ccttccagaa ccttagtgag cagcccgaag
     3481 actttcgccg actcggcggc ggggactcgc gccgcggatt cgagacggcg ggccgcggcg
     3541 gcagctcctt catcaagaaa gaccgagacg gcctcgcgca cgaccgcctc gacgcgctcg
     3601 cgcctgagca ggccgccctc gtcgcgcgcg cggagcagct cctcgtaagc gcccagcctg
     3661 agcccttcgg cgacgaggtc gggcagggct cgcgcgccaa gctccggccg gtcgaaggag
     3721 gcgaccatgc gcagtaggtc tgcgcactcg tccgcgccgg gcgcgcggcc gaagacgtga
     3781 aggcccgtcg gtatcagccg ccgctcgacc tccaagacct gctcgtagag ctcgagcacg
     3841 cgccggtcg
//
LOCUS       DASPKR010000173         5823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_21642, whole genome shotgun sequence.
ACCESSION   DASPKR010000173 DASPKR010000000
VERSION     DASPKR010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5823)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5823
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21642"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1170)
                     /locus_tag="VD968_04850"
     CDS             complement(<1..1170)
                     /locus_tag="VD968_04850"
                     /inference="COORDINATES: protein motif:HMM:NF025053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein
                     phosphatase"
                     /protein_id="HYE13752.1"
                     /translation="MTENPTGVRVETATVTDRGLNERRPLNEDSMLCDPAHSIFAVAD
                     GVGGAEAGEVASKAAIEILQQAFDGHAAGEDAEDLMEIAIQRANDQIYRQSREQPQLS
                     MMATTIVALHVDGLRATVGHVGDSRLYSLTPDGTLRRETEDHSVVEEEVRAGRMTPEQ
                     AANHPSRNVISRALGAESSVEVDLRTFDFGSGTTFLLCSDGITRHIADDELAGLLQSV
                     PDLEEACAEMKRLCFERGAEDNLTAVLVRVGGAGEGSHDEEATLIRERPSLDAARAAH
                     AASASPPTLRRPFNDAAAVKHESGAVGTSQNGGATSNVAPAAKRSGGALRAVAVLFLV
                     AAAVAFAFFVGMMFERRGRAKLAGVLPQATPFPAVTPVPAPSVESPEARFAERLRA"
     gene            complement(1167..2879)
                     /locus_tag="VD968_04855"
     CDS             complement(1167..2879)
                     /locus_tag="VD968_04855"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HYE13753.1"
                     /translation="MKNRASTHLLLLLLIVGFEIVGYMAVYQSALLRGYEPSTVGAAR
                     DLLLYVPIIGLLFWLSRAMRFRGSWALYTTAILLFSVGQLVQYRLYSDPEYGSGNTAQ
                     ARAEKTQVQRMRYIAQYYDADKKKLMGLEATAPQPQATPQITRRAQVSVGRALTSSFT
                     WIPLFAFLAMAAAYWLCTQDKYLNWLQRHSFVIVLVTLVPLAAAVLWSSAGKFLGEMT
                     PWEPSKIPFLVGFAGILTAHYRELARTYWGMPRARNIVPLVIMGLIPFIPFFALKDFG
                     QMLVFSGAYATLYLVAVRRWPQLLVFVGSLVLVVVILVVGALPPQVQEKVPTLSTVAA
                     PVRAILPDRIKQRFHLWLDGFAPPSPDVEWWKGDYEDALKENPRMRELAEESPAMQKT
                     VNVDVWFDRIAFQPSQATFGISAGGVSGRGLGLGFAEVIPVADSDYIYAAIGEELGLL
                     GGAVVFLALLVFVNAGVRTSIEARDMFTKLCAAGLTAFMGFQALVNIGGTTRALPMTG
                     ITLPFVSHGGFSLITSFAMLGMLLAFSHRNASDAEAAARPAARFTPLRAAAEDEPRIP
                     EAVQ"
     gene            complement(2902..4143)
                     /locus_tag="VD968_04860"
     CDS             complement(2902..4143)
                     /locus_tag="VD968_04860"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HYE13754.1"
                     /translation="MYSNPSYTLKEVQDESVWIRLNANERDRPLVNRALGAYYIPGST
                     FKTAVMVAAFNHGMQGSKFNCSGAGFYAERGAKPIFDAGGAGEVHGTIGIDTALEVSC
                     NQYFAQLAIKLGPEKLAEALRQLGMTPTNSPAEALRGRKQPQIWNTSMPSVARALAPR
                     EATVALYPKMRDYDLGLVGFGQGYAGQMTPFEMALVAAAIGNLEGKLMKPKIEYDVPP
                     AVWAQATTSQHAAEMRRIMGLVTGGPSGTATRVFANVHAQGILTGGKTGTAEKEVPVY
                     DPKTGEIKMQKKIERDTRGNPIREYMVPVLSPEFRIDSWFLCIAPLENPQLAIAVIVE
                     GGGYGATAAAPIAAGLVLKARDLGLLGAAAPAQQPGQQPQQQQSQPGGRRQQPARPAA
                     SPQQQPARPVARQRDGATTGR"
     gene            complement(4080..4850)
                     /locus_tag="VD968_04865"
     CDS             complement(4080..4850)
                     /locus_tag="VD968_04865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13755.1"
                     /translation="MLLLADIPEKQPALLSIIYVAGLGLMALLLLVSLVLGARRRRTA
                     LDAVAPADLPAEVRERLGATSTNRGLKALRWVFILLALAVFGFHVYWAKYAPETNERF
                     QELSYKDLRNRRLAESTLRGWVLDRSGSLERALALYRRGPGGQIVREYPLDAEMAQLF
                     GSDRGDPGLERALFGVQSGAAPEVSDILMERDIKQPANLDVRLTIDSELQKEAVALLK
                     GGTAPSSSSTRRRVSCWRCTATRPTRLKRCRTRASGFA"
     gene            complement(4888..5706)
                     /locus_tag="VD968_04870"
     CDS             complement(4888..5706)
                     /locus_tag="VD968_04870"
                     /inference="COORDINATES: protein motif:HMM:NF028007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HYE13756.1"
                     /translation="MSKDKEKKRDEALVERLFRRVFESMGSVVDRKLGREAEAQTGFT
                     TTKLIERMKHLIDERSRDDGQGRHIAPHLFKLKVEWGTHSEAPPEYIKELENEVLAAA
                     IDHINDQRLRTLAPVKVETSADIFTSGIAVDPTFGEFEEELKKRDEAARLKSELKDAV
                     PRAQKPSPDVAVVARVTLPTGPSQKTLSFRPGGRRLGVGRVADNDLQLDHPSVSKIHA
                     ALVMNREGTLLVADTGSTNGTFINGRRLSYGEARQIEDGDVVSFGDAEVRFKRA"
BASE COUNT          896 a         1903 c         2045 g          979 t
ORIGIN      
        1 tgccctgagc cgctcggcga agcgcgcctc ggggctctcg accgaggggg ccggcacagg
       61 cgtcacggcc gggaagggag tcgcctgcgg cagcacgcct gctagctttg ctcgccctct
      121 gcgctcgaac atcatcccaa cgaagaaggc gaacgcgacc gcggccgcaa cgaggaagag
      181 cacggcgacg gctcgaagcg ccccgcccga gcgcttcgct gcgggcgcga cgtttgatgt
      241 ggcgccgccg ttctgtgatg tcccgacggc gccgctttcg tgcttgactg ccgcggcgtc
      301 gttgaagggt ctgcgaagtg tgggaggcga tgcggatgcc gcgtgggccg cgcgcgctgc
      361 gtcgagcgac gggcgctcgc gtatgagcgt cgcctcctcg tcgtgcgagc cctcgcccgc
      421 gccgccgacg cggaccagca cggccgtcaa attgtcctcg gcgccgcgct cgaagcagag
      481 ccgcttcatc tcggcgcacg cctcttccaa gtcggggacg ctctggagga ggccggcaag
      541 ctcgtcgtcc gcgatgtggc gcgtgatgcc gtcggagcag agcaggaagg tcgtgccgct
      601 cccgaagtcg aaggtgcgga ggtcaacctc tacggagctt tcggcgccga gcgcgcggct
      661 gatgacgtta cggctcgggt ggttggcggc ctgctcgggc gtcatgcgcc ctgcgcgcac
      721 ctcctcctcg acgacggagt ggtcttcggt ttcccgccgc agcgtcccgt cgggcgtgag
      781 gctgtagagt cgcgagtcgc cgacgtggcc cacggtcgcg cgcaggccgt ccacgtggag
      841 cgcgacaatc gtcgtcgcca tcatggagag ctgaggctgc tcgcgcgact ggcggtaaat
      901 ctggtcgttg gcgcgctgaa tcgcaatctc catcaggtct tcggcgtcct cgcccgcggc
      961 gtgcccgtcg aatgcctgct gaagaatctc tatggctgcc ttcgaggcga cctcgcctgc
     1021 ctcggcgccg cccacgccgt cggccacggc gaatatgctg tgcgcggggt cgcacagcat
     1081 cgagtcctcg ttgagcggcc gccgctcgtt caggccgcgg tcggtgacgg tcgccgtctc
     1141 gacgcgcact cccgtggggt tttctgtcat tgaaccgcct ccggtattcg tggctcatcc
     1201 tcggcggcgg cccgcaaggg cgtgaaccgt gccgcgggcc gcgcggccgc ctcggcgtcg
     1261 ctcgcgttgc ggtgcgagaa cgcgagcagc atcccgagca tggcgaagct tgtgatgagg
     1321 ctgaaacccc cgtggcttac gaaggggagc gtgatgcccg tcatggggag ggcgcgggtc
     1381 gtgccgccga tgttgactag cgcctggaag cccatgaagg ccgtgaggcc cgccgcgcag
     1441 agcttcgtga acatgtcgcg cgcctcgatg gaggtgcgca ccccggcgtt gacgaagacg
     1501 agcagggcga ggaagacgac ggcgccgccc aagagcccca actcttcgcc gatggctgcg
     1561 tagatgtagt cggagtcggc gacggggatg acttctgcga agccgagccc gaggccccgg
     1621 ccgctcacgc cgcccgcgga gatgccgaag gtggcctgag aaggctggaa ggcgatgcgg
     1681 tcgaaccaga cgtcaacgtt gacggtcttc tgcatcgcgg ggctctcctc ggccagctcg
     1741 cgcatgcgcg ggttctcctt gagcgcgtcc tcgtagtcgc ccttccacca ctcaacgtcc
     1801 ggcgaaggcg gggcgaagcc gtcgagccag aggtggaagc gctgcttgat gcggtcgggg
     1861 agaatagcgc gcacgggcgc cgcgacggtc gagagcgtcg gcaccttctc ctgcacctgc
     1921 ggcggcagcg cgcccacgac gaggatgacg acgacgagca cgagcgagcc cacgaagacg
     1981 aggagctgcg gccagcgccg aacggcgacg aggtagagcg tcgcgtatgc gccgctgaag
     2041 acgagcatct gcccgaagtc cttcagcgcg aagaagggta tgaaggggat gagccccatt
     2101 atgacgagcg gcacgatgtt ccgggcccgc ggcatccccc agtaggtgcg cgcgagctct
     2161 cggtagtggg ccgtcagaat gcccgcgaag ccgacgagga agggaatttt cgagggctcc
     2221 cacggcgtca tctcgccgag gaacttgccc gcgctcgacc agagcaccgc cgccgccaga
     2281 gggacgagcg tgacgagcac gatgacgaag ctgtggcgct gtagccagtt caggtactta
     2341 tcctgcgtgc agagccaata cgccgcggcc atcgccagga aggcgaagag cggaatccac
     2401 gtaaaagacg acgtgagcgc ccggccaacg gagacctgcg cgcggcgcgt tatctgcggt
     2461 gtggcctgcg gctgcggcgc agtcgcctct aggcccatca gcttcttctt gtcggcgtcg
     2521 tagtactgcg cgatgtagcg catgcgctgc acctgcgtct tctcggcgcg cgcctgggcc
     2581 gtgttgccgg agccgtactc ggggtcgctg tagaggcggt actgcacgag ctggccgacg
     2641 gagaagagca gaatcgccgt cgtgtagagc gcccaactcc cccggaagcg catcgcgcgc
     2701 gagagccaga acagtaggcc gatgatgggg acgtagagca ggaggtcgcg cgcggccccc
     2761 acggtcgaag gctcgtagcc gcgcagcagc gccgactgat agacggccat gtagccgact
     2821 atctcgaagc cgactatcag gagcagaagc agtaggtgag tagaagccct gtttttcatg
     2881 ttcccttgtt cgatggcttt gctaacgccc cgtggtcgcc ccgtcgcgct gccgagcgac
     2941 cgggcgcgcg ggctgctgct gcggagaagc ggccgggcgg gccggctgct gcctgcgccc
     3001 gccgggctgg ctctgttgct gctgcggctg ctgccccggc tgttgtgccg gggcggcggc
     3061 gccgagcaag ccgaggtcgc gcgccttgag cactagcccc gcggcgatgg gcgccgcggc
     3121 cgtggcgccg tagccgccgc cctcgacgat gacggcgatg gcgagctgcg ggttctcaag
     3181 tggcgcgatg cagaggaacc aactgtctat gcggaactcg ggcgagagga cgggaaccat
     3241 gtactcgcgt atggggttgc cgcgcgtgtc gcgctcgatc ttcttctgca tctttatctc
     3301 gccggtctta gggtcataga caggcacctc tttctctgcc gtgccggtct tgcctccggt
     3361 caaaatcccc tgcgcgtgga cgttggcgaa gacgcgcgtg gccgtccccg acggcccgcc
     3421 cgtgacgagc cccatgatgc ggcgcatctc ggcggcgtgc tgggaggtgg tggcctgagc
     3481 ccagacggcg ggcggcacgt cgtactcgat cttcggcttc atcagcttcc cttcgaggtt
     3541 gccgatggcc gcagcgacga gcgccatctc gaacggggtc atctgacccg cgtacccctg
     3601 cccgaacccg acgaggccga ggtcgtagtc gcgcatcttc gggtagagcg cgaccgtggc
     3661 ctcgcgcggg gcgagagcgc gcgccaccga aggcatgctc gtgttccaga tttgcggctg
     3721 cttgcgcccg cgcagagcct cggccgggga gttcgtgggc gtcatgccta gctggcggag
     3781 cgcctccgcc agcttctcgg ggccgagctt gatggcgagc tgcgcgaagt actggttgca
     3841 ggagacttcg agcgcggtgt ctatgccgat ggtgccgtga acctcgcccg cgccgcccgc
     3901 gtcgaagatc ggctttgcgc cgcgctcggc gtagaagccc gcgcccgagc agttgaactt
     3961 cgagccctgc atgccgtggt tgaaggcggc gaccatgacc gccgtcttga aggtcgagcc
     4021 cggaatgtag taggcgccga gtgcgcggtt gacgagcggc ctgtcgcgct cgttggcgtt
     4081 caggcgaatc cagacgctct cgtcctgcac ctctttaagc gtgtaggacg ggttgctgta
     4141 catcgccaac agctcacccg tctgcgggtt gaggacgacg acggcgccgt gccgcccttg
     4201 agcagcgcga ccgcctcctt ctgaagctcg ctgtcaatgg tgaggcgcac gtcgaggttg
     4261 gcgggctgct tgatgtcgcg ctccatcagt atgtcagaga cctcgggcgc ggcgccgctc
     4321 tgcacgccga agagggcgcg ctctaggccg gggtcgccgc ggtcggagcc gaagagctgc
     4381 gccatctcgg cgtctaacgg gtactcgcgg acgatctgcc cgccggggcc gcgccggtag
     4441 agcgcgagcg cgcgctccaa actcccggag cggtcgagaa cccagccccg cagcgttgac
     4501 tcggcgagcc gtcggttgcg caggtctttg tagctcaact cctggaagcg ctcgttcgtc
     4561 tcgggcgcgt acttcgccca atagacgtgg aagccgaaga cggcgagcgc gagcagtatg
     4621 aagacccagc gcagcgcctt gaggccgcgg ttcgtagagg tcgcgcccag acgttcgcga
     4681 acctctgcgg gcaggtctgc gggcgcgacg gcgtcgaggg ccgtccgcct gcgccgcgcg
     4741 ccgagcacga gcgacacgag cagcaggagc gccatcagcc ccagccccgc cacgtaaatg
     4801 atgctcagca gcgccggctg cttttcggga atgtcagcga gtaacaacat aaatttcaaa
     4861 gacagcgggg aatcattcct gaccgcttca cgccctcttg aacctgactt cggcgtcgcc
     4921 gaagctgact acgtccccgt cctctatctg ccgcgcctcg ccgtaggaga ggcggcggcc
     4981 gttgatgaaa gtgccgttgg tagagcccgt gtcggcgacg agcagagtgc cttcgcggtt
     5041 catcacgagc gccgcgtgga ttttcgagac gctcgggtgg tcgagctgca agtcgttgtc
     5101 ggccacccgg ccgacgccca ggcgccgccc gccgggacgg aagctcaggg tcttctggct
     5161 cggccccgtc gggagcgtga cgcgcgcgac tacggcgacg tcgggcgagg gcttctgcgc
     5221 cctcggcacg gcgtccttaa gctccgactt aagccgcgcg gcctcgtcgc gcttcttcag
     5281 ctcctcctcg aactcgccga aggtcgggtc aacggctatc cccgaagtga aaatgtcggc
     5341 gctcgtctcg accttgacgg gcgcgagcgt gcgcaggcgc tggtcgttga tgtggtcaat
     5401 ggcggcggcg agcacctcgt tctccaactc cttgatgtac tctggcggcg cctcggagtg
     5461 cgtaccccac tcgaccttga gcttgaagag gtggggggcg atatgccggc cctggccgtc
     5521 gtcgcgcgag cgctcgtcta tgaggtgctt catgcgctcg atgagcttgg tggtggtgaa
     5581 gccggtctgc gcctccgcct cgcggccgag cttgcggtca acgaccgagc ccatgctctc
     5641 gaagacgcgg cggaacagcc gctcgaccag cgcctcgtcg cgcttcttct ctttatcctt
     5701 gctcatgcga agcgggccgc cttgacaaaa tctctcccgc gcgccggccg cgggcgaaaa
     5761 agccggggga gcgaaaacgt tttgcttgaa tttcggctgc ggtcattcta gccgaaaccc
     5821 gcc
//
LOCUS       DASPKR010000174         4802 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_410855, whole genome shotgun sequence.
ACCESSION   DASPKR010000174 DASPKR010000000
VERSION     DASPKR010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4802)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4802
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410855"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            152..1090
                     /locus_tag="VD968_04875"
     CDS             152..1090
                     /locus_tag="VD968_04875"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYE13757.1"
                     /translation="MSRALVTGGAGFIGSNVAGLLVEEGYDVVVLDNLSTGYRENLAG
                     LPPVRFVEGDVRDERAVGEAVEGAETVFHLAASVGNTRSIERPVEDSEVNVIGTLRVL
                     EAARRAGARKIVCSSSAAIFGELKRLPIDESHPCEPGSPYGVSKLAEEKHCLAYAALH
                     GMEAVCLRYFNVYGVNQRYDAYGNVIPIFAHRMLGGEPLTVYGDGEQTRDFVNVRDVA
                     RANLLAARARGVSGAFNIASGESVTVNKLVGLMREAGGLSVEVEHAPPRKGDVLHSLA
                     DISAAREALGYEPAVNLRDGLAEYMAWAKAETLQGR"
     gene            1087..1629
                     /gene="rfbC"
                     /locus_tag="VD968_04880"
     CDS             1087..1629
                     /gene="rfbC"
                     /locus_tag="VD968_04880"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR01221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HYE13758.1"
                     /translation="MSEESNVKETKLKGAFIVAPKVFEDERGFFAPSWSLKDLPEEIY
                     PRIVESNITYNPRKGTLRGMHYQAAPRGQAKIVRCTRGAVYDVIIDLRPDSPTFKQWL
                     GVELTAENRLTLCVPKEFAHGYQTMTDDSELFYVVSDYYSGEHAAGVRWDDPAFGIVW
                     PEAPDRIIIKRDREYADFTL"
     gene            1626..2618
                     /locus_tag="VD968_04885"
     CDS             1626..2618
                     /locus_tag="VD968_04885"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017944086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HYE13759.1"
                     /translation="MKRALITGITGQDGSYLAEHLLDEGYEVHGLVRRVAMEDPERRF
                     TRIAHLLDRVTLHGASLESYASIFHIFSKHEFEECYHLAAQSFVAESFADGFSTMNTN
                     INGTHYVLAALRELQPRCRFYFAGSSEMFGKVRETPQKETTPFHPRSPYGISKVAGFD
                     LTRNYREAYGMYCASGILFNHESPRRGFEFVTRKITSTVAKIKAGEATELRLGNLDAR
                     RDWGHAADYVRAMRLMLQRDEPDDYVVATGETHTVQEFCERAFAEVGLDWREFVRVDE
                     RFLRPAEVELLIGDSAKARRELGWEPRHTFASLIKEMVGEDVKAIGGDRSRAAG"
     gene            2667..3872
                     /locus_tag="VD968_04890"
     CDS             2667..3872
                     /locus_tag="VD968_04890"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYE13760.1"
                     /translation="MKIVWISHSGEPNGGAELSLWEAARGLAGRGVELHAVVPESRGL
                     GERLEAAGARVWVVPFAWWVGRGRWRAPRYRLKRAGRNLFYLPRLRRLLTRLSPDVVM
                     SNTLAVPSGALAARWAGLPHVWYVHELFGVEGHGLYFDWGQSASLSLMDRLSERILVN
                     SETVLRSFSPHVSGEKLRVVRYAVEVPERTLPASVGQKGLKLIQVGLLSPGKRQEDAV
                     RALALLAARGLDVRLKLLGDEARGYESLLPALCRELGVEGRVEFVPFSLDPFSHIAAA
                     DVVVMCSRGEAFGRVTVEAMKLGKPVVGADSAGTAELIRDGETGLLFRLGDAEDLARA
                     IGTLYAAPALVVEMGERARAWATASFSSEGYASALIEVFKEVAGAAGRVGRTAGAAEL
                     SASRLKSKA"
     gene            3869..>4802
                     /locus_tag="VD968_04895"
     CDS             3869..>4802
                     /locus_tag="VD968_04895"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE13761.1"
                     /translation="MKFGLVSHALPPSASGQAVTLWHLLRGVPAEGYCLMSGRDWEGS
                     GAPGLASQRLPANYYRLPEEFVIRRGYRFGVNWARQGFNIPYGVARRARRIRRILERE
                     GCRAVVACTGELLDLPAAYLAARGLGLPFYAYIFDHYSYREWYDPVMQAWARRIESKV
                     FRRAEKVIAVNEVLRDDLRSQYGVEPALIHNSFDIRPYAALADEPFEPRPDGEVRIVY
                     TGAIYEAHYDAFRDLLAALERLGRPEVKLHAYTTQRAEELAGRGIGGPAVVFHPHLSV
                     AEMPGVQRRADLLFLPLAFESPYPDLVRTSAPVKF"
BASE COUNT          763 a         1642 c         1662 g          735 t
ORIGIN      
        1 accgcgactc cgaaatcctg acgacgaaga ttaagagggt tgacatctcg aaggccgtgc
       61 gcgacctcgg ccacaagaac tccttcggcc tcgaagaggg catgaggatt accgccgact
      121 ggatgcgcga cgtttacaac ctcaggtgac tatgagcagg gcattggtga cgggcggggc
      181 gggcttcatc ggctcgaacg tcgcggggct tctcgtggag gagggctacg acgtggtcgt
      241 gctcgacaac ctctcgacag gctaccgcga gaacttggcg gggctgccgc ccgtgcgctt
      301 cgtggagggc gacgtgcgcg acgagcgggc ggtcggggag gccgtggaag gggccgagac
      361 ggtcttccac ctcgcggcct cggtcggcaa cacgcgctca atcgagcggc ccgtcgagga
      421 ctcggaggtg aacgtgatcg gcacgctgcg cgtgctggag gccgcgcggc gcgcgggcgc
      481 gcgcaagatc gtctgctcct cttcggccgc gatattcggc gagctgaagc ggctgccgat
      541 tgacgagagc cacccctgcg agccgggctc gccctacggc gtgagcaagc tcgcggagga
      601 gaagcactgc ctggcctacg cggcgctgca cgggatggag gccgtgtgcc tgcgctactt
      661 caacgtctat ggcgtcaacc agcgctacga cgcctacggc aacgtcatcc ccatcttcgc
      721 ccaccgcatg ctcggcggcg agccgctcac ggtttacggc gacggcgagc agacgcgcga
      781 cttcgtcaac gtccgcgacg tcgcgcgcgc gaacctcctg gccgcgcgcg cgcgcggcgt
      841 ctccggcgcc ttcaacatag cgtcgggcga gagcgtgacc gtcaacaagc tcgtcggcct
      901 catgcgcgag gcgggcggcc taagcgtcga ggtcgagcac gcgccgcccc gcaagggcga
      961 cgtgctgcac agcctcgccg acatctcggc cgcgcgcgag gcgctgggct acgagccggc
     1021 cgtaaatttg cgagatgggc tcgcggagta catggcctgg gcgaaggccg agacactaca
     1081 gggaagatga gcgaagagtc gaacgttaaa gagacgaagc tgaagggcgc gtttatcgtc
     1141 gcgccgaagg tgttcgaaga cgagcgcggg ttcttcgcgc cgagctggtc tttgaaggac
     1201 ttgccggagg aaatctaccc gcgcatcgtc gagagcaaca tcacctacaa cccgcgcaaa
     1261 ggcacgctgc gcgggatgca ctaccaggcc gcaccgcgcg ggcaggccaa gatcgtgcgc
     1321 tgcacgcgcg gcgccgtcta tgacgtgata atagacctgc ggccggactc gccgaccttc
     1381 aagcagtggc tcggcgtaga gctgacggcg gagaaccggc tcacgctctg cgtgccgaag
     1441 gagttcgcgc acggctacca gacgatgacg gacgactcgg agctcttcta cgtcgtctcg
     1501 gactactact cgggcgagca cgcggccggc gtccgctggg acgaccccgc gttcggcatc
     1561 gtgtggccgg aggccccgga caggatcata atcaaaaggg acagggagta cgccgacttt
     1621 actctatgaa aagggcattg ataaccggca tcacggggca ggacggcagc tacctggccg
     1681 agcacctgct cgacgaaggc tacgaggttc acggcctcgt gcgccgcgtc gcgatggaag
     1741 acccggagcg gcgcttcacg cggatcgcgc acctgctcga ccgcgtcacg cttcacggcg
     1801 cgagcctcga gtcctacgcc tccatcttcc acatcttcag caagcacgag ttcgaggagt
     1861 gctaccacct cgccgcgcag tcgttcgtcg ccgaaagctt tgccgacggc ttctcgacga
     1921 tgaacacgaa cataaacggc acgcactacg tcctcgccgc gctcagggag cttcagcccc
     1981 gctgccgctt ttacttcgcc ggctcgtccg agatgttcgg caaggtgcgc gagacgccgc
     2041 agaaggagac gacgcccttc cacccgcgct cgccctacgg catcagcaag gtcgccggct
     2101 tcgacctgac gcgcaactac cgcgaggctt acgggatgta ctgcgcctcg ggcatattgt
     2161 tcaaccacga gagcccccgg cgcggcttcg agttcgtgac gcgcaagatc acctcgaccg
     2221 tggcgaagat aaaggcgggc gaggccacgg agctccgcct gggcaacctc gacgcgcgcc
     2281 gcgactgggg ccacgcggcc gactacgtcc gcgccatgcg cctgatgttg cagcgcgacg
     2341 agccggacga ctacgtcgta gccaccggcg agacgcacac agttcaggag ttctgcgagc
     2401 gcgccttcgc cgaggtcggc ctcgactggc gcgagttcgt gcgcgtggac gagcgcttcc
     2461 tgcggcccgc cgaggtcgaa ctgctcatag gcgactccgc gaaggcccgg cgcgagctgg
     2521 gctgggagcc ccgccacacc ttcgcctcgc tcatcaagga gatggtcggc gaagacgtga
     2581 aagcgatagg gggcgacagg tcgcgggcgg cgggctgaaa actcgtcccc tccgccgcgc
     2641 gccacccccc actctctaaa ctccccatga agatcgtctg gatttcccac agcggcgagc
     2701 cgaacggagg ggcggagctg agcctgtggg aggccgcgcg cgggctggcg gggcgcggcg
     2761 tggagctgca cgccgtcgtg ccggagtcga ggggcctggg cgagcggctc gaggccgcgg
     2821 gcgcgcgcgt ctgggtcgtg ccgttcgcct ggtgggtggg ccgcgggcgc tggcgcgcgc
     2881 cgcgctacag gctcaagcgc gcgggccgga acctcttcta cctgccgagg ctccgccgcc
     2941 tgctcacgcg cctctcgccg gacgtggtga tgtcgaacac gctggccgtg ccttcgggcg
     3001 cgctcgcagc gcgctgggcc gggctgccgc acgtctggta cgtccacgag ctgttcggcg
     3061 tcgagggtca cggcctctac ttcgactggg ggcagtcggc cagcctctct ctgatggaca
     3121 ggctttcgga gcggatactc gtaaactccg agactgtgct ccgcagcttc agcccgcacg
     3181 tctcggggga gaagctgcgc gtcgtgcgct acgccgtcga ggtgcctgag cgcaccctgc
     3241 ccgcctcggt cgggcagaag ggcctgaagc tcatacaggt cgggctgctc tcgccgggca
     3301 agcggcagga ggacgccgtg cgcgcgctcg cgcttctggc cgcgcgcggg ctcgacgtgc
     3361 gcctcaagct cctcggcgac gaggcgcgcg gctacgagtc gctcctgccg gcgctctgcc
     3421 gcgagttggg ggtggagggg cgcgtcgagt tcgtcccctt cagcctcgac cccttctcgc
     3481 acatagccgc ggccgacgtg gtcgtgatgt gctcgcgcgg cgaggcgttc ggccgggtca
     3541 cggtcgaggc gatgaagctc ggcaagcccg tagtcggcgc cgacagcgcc ggcacggccg
     3601 agctgattcg cgacggcgag acgggcctgc tcttccggct cggcgacgcc gaagacctcg
     3661 cgcgcgcaat cgggacgctg tacgcggcgc cggcgctcgt cgtggagatg ggcgagcgcg
     3721 cccgcgcctg ggccacggcc tccttcagca gcgagggcta cgcctcggct ctcatcgaag
     3781 tcttcaagga agtggcaggc gcggccggcc gtgtgggacg gacggccggc gcggccgagc
     3841 taagcgcgtc gcgcttgaag tcaaaggcat gaaattcggt ctggtatcgc acgcgctccc
     3901 cccctcggcc tcggggcagg ccgtgacgct ctggcacctc ctgcggggcg tgccggcgga
     3961 gggctactgc ctcatgtccg ggcgcgactg ggagggctcg ggcgcgccgg ggctcgcgtc
     4021 gcagaggctg cccgcgaact actaccggct tcccgaggag ttcgtcataa ggcgcggcta
     4081 ccgcttcggc gtcaactggg cgcggcaggg cttcaacatc ccctacggcg tcgcgcgccg
     4141 cgcgcgccgc atacgccgca tccttgagcg cgaaggctgc cgcgccgtcg tcgcgtgcac
     4201 gggcgagctt ttagacctcc cggccgcgta cctcgccgcg cgcggcctcg ggctcccgtt
     4261 ctacgcgtac atcttcgacc actactccta ccgcgagtgg tacgaccccg tcatgcaggc
     4321 gtgggcgcgc cgcatcgagt cgaaggtctt caggcgcgcc gagaaggtca tagccgtcaa
     4381 cgaagtgctg cgcgacgacc tgcgcagtca atacggcgta gagcccgcgc tcatacacaa
     4441 ctcgttcgac atacgcccct acgcggcgct cgccgacgag ccgttcgagc ctcgccccga
     4501 cggcgaggtg cgcatcgtct atacgggcgc catctacgag gcgcactacg acgccttccg
     4561 cgatcttctg gccgcgctcg aacggctcgg gcgccccgaa gtgaagctcc acgcctacac
     4621 tactcagcgg gcggaggagc tggccgggcg cggcataggc ggccccgccg tggtcttcca
     4681 cccgcacctc tccgtcgccg agatgcccgg tgtgcagcgg cgcgcagacc ttctgttttt
     4741 gccgctcgcc ttcgagtcgc cctaccccga cctggttcgc accagcgcgc ccgtcaagtt
     4801 cg
//
LOCUS       DASPKR010000175         4594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_281588, whole genome shotgun sequence.
ACCESSION   DASPKR010000175 DASPKR010000000
VERSION     DASPKR010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4594)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4594
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281588"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..447)
                     /locus_tag="VD968_04900"
     CDS             complement(<1..447)
                     /locus_tag="VD968_04900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE13762.1"
                     /translation="MQTAIEVGRGFEAGLIGRAPASARPVIQFEGVHKTYTMGDVEVH
                     ALRGVSLTIREREFVAVMGASGSGKSTMMNIIGCLDRPTRGRYVLDGADVSSLSKDER
                     ADIRNSKLGFVFQGFNLLSRTSALENVELPMLYAGVEPAERRRRALG"
     gene            complement(469..2124)
                     /locus_tag="VD968_04905"
     CDS             complement(469..2124)
                     /locus_tag="VD968_04905"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYE13763.1"
                     /translation="MKWVRAKLGTRRRLAFVFAAVALLCAGGFWMWGGGASAAEFTTA
                     KVERGSLRNSVTATGTLQAVTTVEVGSQASGTISALYADFNTTVKKGQVIAQLDPATV
                     QAQVQQARANLEQARAGLEQARAGLAQARAGVGQSSAGVADAQAKALAAGSTAQTQRA
                     GVTSAEANLAVLKAQLDDAASVLRQEESLLKSGVISRREYETAQTNYRTAQARYNQAQ
                     AQLNQARLSEQSASSSGQAQARAQVQQAQSQVEQSRAQVRQAEAQVLNAAAQVEQAGA
                     ALRLSEVNLANTTIRSPIDGVVVSRDVDVGQTVAASLSAPTLFTIANDLTQMQVMANI
                     DQADIGLVERAKAVRFDVDAFPGEEFEGSIRQIRLNPVSAQNVVTYNVVIDVANPEQK
                     LKPGMTANLTVTIDERRDVLKVPNAALRFSGPQLTEEQQAERAERRRERAASGEQAGQ
                     QRQGGERGGGDFAPASAPVLEGQTRRVWVLGAEGRAEPRRIKVGLSDGSATEVVEGEL
                     REGEVVITGQTVAASQRAQQGAGQQTAPGFGGQPRGAGGGRRR"
     gene            complement(2283..3050)
                     /locus_tag="VD968_04910"
     CDS             complement(2283..3050)
                     /locus_tag="VD968_04910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13764.1"
                     /translation="MRLLKHLSLAAFAAALLAAGAATARAQAGAAAAVELSRTRAELI
                     KATEDYKKSTEDFIALKQAEIERAEQKHAQLKELVAEGLLARRELEASEQALASLRSS
                     LETLRAQVADSDHLIAEIEAAEELAKSQPVVAAGAGNSFLKPTARISPAAVVLRHTGA
                     ANWSVANLSGVQAFFASTFGRPLPLSAVGQTATHDRMGFDHRRAVDVPLHPDSAEGRA
                     LINYLHSQGITFIAFRAAVPGSATGPHIHIGPPSHRL"
     gene            3308..3844
                     /locus_tag="VD968_04915"
     CDS             3308..3844
                     /locus_tag="VD968_04915"
                     /inference="COORDINATES: protein motif:HMM:NF025173.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic heavy metal sensor"
                     /protein_id="HYE13765.1"
                     /translation="MKRLGKIKTLGLAAVAGLALAAPVAIAQTGAQDGQAQKPERGER
                     RHGKGFGRGHRGGGHGFGLRGLNLTEDQQARVRQIHQAAAERTRPLREQLRAKHVELR
                     ELQEGGTFNEALATQKLTEAASIQARLMGEQFRAHQEVLSVLTAEQKAQLEQQREQRK
                     QRREQRKNRRGERPGELM"
     gene            3931..4557
                     /locus_tag="VD968_04920"
     CDS             3931..4557
                     /locus_tag="VD968_04920"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE13766.1"
                     /translation="MRGEELEQASDLELARLAREGDEPAFAEIVRRYGPRVFRVAGRF
                     FRRPEQVEEAAQEIFLRAFTQLESFEGRGSLEGWLTRIATTTSLNMLRGARRRPELSI
                     SDLTEDEGAWLDEKTASGAAERHHAAERGAVAADLAEKVLGTMSADDRLVLTLVDGEE
                     MPVRDVAEMTGWSESNVKVKAFRARRRMREAVEKLLGRGGGRERVGKG"
BASE COUNT          711 a         1592 c         1568 g          723 t
ORIGIN      
        1 cccgagcgcc cgccgccgcc gctcggccgg ctcgacgccc gcgtagagca tcggcagctc
       61 gacgttctcc agcgccgacg tgcgcgaaag caggttgaag ccctggaaga cgaagccgag
      121 cttgctgttg cgtatgtcgg cgcgctcgtc cttcgagagg cttgacacgt cagcgccgtc
      181 gaggacgtaa cggccgcgcg tcgggcggtc gagacagccg atgatgttca tcatcgtgga
      241 cttgcccgag ccggacgcgc ccattacggc gacgaactcc ctctcgcgta tggtcagcga
      301 gacgccgcgc agggcgtgaa cctctacgtc gcccatcgtg taggtcttgt gaaccccttc
      361 gaactgtatg acgggccgcg ccgaggccgg ggcgcggcct atcagccccg cctcgaaccc
      421 gcgcccgacc tcgattgccg tctgcatcat ccctgcccct taatctctct acctgcgcct
      481 cccgccgccg gcgccgcgcg gctggccgcc gaagccgggc gccgtctgct gccccgcgcc
      541 ctgctgcgcg cgctgcgagg ccgcgaccgt ctgcccggtg atgacgacct cgccctcgcg
      601 cagctcgccc tcaacaacct ccgtggccga gccgtccgag aggcccacct ttatcctgcg
      661 cggctcggcc cgcccttcgg cgccgagcac ccaaacccgg cgcgtctgac cttcgagcac
      721 gggggcgctg gccggcgcga agtcgccgcc gccgcgctcg ccgccctgac gctgctgccc
      781 ggcctgctcg cccgaggccg cgcgctcgcg ccgcctctct gccctctcgg cctgctgctc
      841 ttcggtgagc tgcggccccg agaaacggag cgccgcgttc gggactttga gcacgtctct
      901 gcgctcgtca atcgtcacgg tcaggttcgc cgtcatgccg ggcttgagct tctgctccgg
      961 gttcgcgacg tcaatcacga cgttgtacgt gacgacgttc tgcgcgctca cggggttgag
     1021 gcgaatctgg cgtatcgagc cctcgaactc ctcgccgggg aaggcgtcaa cgtcgaacct
     1081 gactgccttc gcgcgctcga ccaatccgat gtcggcctgg tcaatgttgg ccatgacctg
     1141 catctgcgtc aggtcattgg cgatggtgaa gagcgtcggg gccgaaaggc tcgcggctac
     1201 ggtctgcccg acgtccacgt cgcgcgagac cactacgccg tcaataggcg agcgtatggt
     1261 cgtgttggcg aggttgacct ccgagagcct gagcgccgcc ccggcctgct cgacctgagc
     1321 ggcggcgtta agaacctgcg cctcggcctg ccgcacctgc gccctcgact gctcgacctg
     1381 cgactgtgcc tgctgcacct gcgcgcgcgc ctgcgcctgc cccgagctag aagccgactg
     1441 ctcgctcagg cgggcctggt tgagctgggc ctgcgcctgg ttgtagcgcg cctgcgccgt
     1501 cctgtaattc gtctgcgccg tctcgtactc acgccgggag atgacgccgc tcttcaggag
     1561 cgactcctcc tgcctgagca cgctcgccgc gtcgtcgagc tgagccttga gcacggcgag
     1621 gttcgcctcg gcgctcgtga cgcccgcgcg ctgagtctgg gcggtcgagc ctgcggccag
     1681 cgccttcgcc tgggcgtcgg cgacgcccgc gctcgactgg ccgacgccgg ccctcgcctg
     1741 cgccagcccc gcgcgtgcct gttcgagccc ggcccgtgcc tgctcaagat tggcgcgtgc
     1801 ctgctgaacc tgcgcctgca cggtcgccgg gtcgagctgc gctatgacct gccccttctt
     1861 gacagtcgtg ttgaagtcgg cgtagagcgc cgagattgtg ccggaagcct ggctcccgac
     1921 ctcgacggtc gtgacggcct gtagcgtccc ggtcgccgtc acggagttgc gcaaactccc
     1981 gcgctcgacc ttcgccgtcg tgaactcggc cgcgctcgct ccgccgcccc acatccagaa
     2041 gccgcccgcg cacaggagcg ccaccgcggc gaacacgaac gccagccgcc tcctcgtccc
     2101 caacttagcc ctgacccact tcatctctcg aaaccccttc cagactaaaa aagccagtca
     2161 caaaaccggc ccacatatag acagacaccg gaaagcccgc cccggttaca cgaagagaag
     2221 gcggaaggca gtcaaaccac gacgagcgta tttactgcct ttcgccccct gctttctgcc
     2281 ttttaaagtc tgtgcgaggg cgggccgatg tgtatgtgcg ggccggtggc ggagccaggg
     2341 acggcggcgc ggaaggctat gaaggtgatg ccctgcgagt gcaggtagtt gatgagcgcc
     2401 cggccctctg cgctgtcagg gtggagcggc acgtcaacgg cgcggcggtg gtcgaagccc
     2461 atgcggtcgt gcgtcgccgt ctgcccgacg gcgctcagtg ggagcggacg gccgaaggtg
     2521 gaggcgaaga acgcctgcac gcccgagagg ttcgccacag accagtttgc ggcgcccgtg
     2581 tggcgcagga cgacggcggc cgggctgatt ctggccgtgg gcttgaggaa agagttgccc
     2641 gcgcccgcgg cgacgacggg ctgcgatttg gcaagctcct cggcggcctc tatctctgcg
     2701 atgagatggt cggaatcggc gacctgcgcg cggagcgttt cgagcgacga gcgcagagag
     2761 gctagcgcct gctcgctcgc ttcaagctcg cgccgggcga ggaggccctc ggcgacaagc
     2821 tccttcaact gcgcgtgttt ctgctcggcg cgctcgattt cagcctgctt gagcgcgatg
     2881 aaatcctccg tgcttttctt gtaatcctcc gtggccttta tcagctcggc gcgcgtccgc
     2941 gaaagctcga cggccgccgc ggcgcccgcc tgagcgcgcg ccgtcgccgc gcctgccgcg
     3001 agcagggccg cggcgaaggc cgccaaactt aaatgcttta aaagtctcaa aactttaatc
     3061 gccgctcccc cgcgcagaag tcatacgccg gagtgcgcgt gcgcggttcc atttgatgag
     3121 tgagggggcg ggccgattgc ccgcgcgcta aattttaggg gcgggtgtaa cgggccgcac
     3181 ccgcgcggtg tctgaccttg cgggggaagg cgaccgccac aggcgcgccc tcccccgtaa
     3241 gttcgcaaaa gcaactcctc cccgcggcat ataactgatg taaactaagg agcacggagt
     3301 tacagagatg aagagactcg gtaagattaa aacactcggc ctcgcggccg tcgccggcct
     3361 cgcgctggcg gcccccgtcg ccatcgcgca gactggcgcg caggacgggc aggcgcagaa
     3421 gcccgagcgc ggcgagcgcc gccacggcaa gggcttcggc cgcggccacc gcggcggcgg
     3481 tcacggcttc ggcctccgcg gcctgaacct gaccgaagac cagcaggcgc gcgtccgcca
     3541 gattcaccag gccgcggccg agcgcacgcg cccgctgcgc gagcagctcc gggccaagca
     3601 cgtggagctt cgcgagcttc aggagggcgg caccttcaac gaggcgctcg ccacgcagaa
     3661 gttgacggag gcggcctcca tccaggcacg gcttatgggc gagcagttca gggcgcacca
     3721 ggaggtgctc tccgtgctca cggccgagca gaaggcgcag ctcgagcagc agcgcgagca
     3781 gcgcaagcag aggcgcgagc agcgcaagaa ccgccgcggc gagcgcccgg gcgagttgat
     3841 gtaacagcct tcgcgttggg ccgaggccgt gggcgtgacc ccgacgacgc gcacggcctc
     3901 ggccccgcgc gaaccaaaag cggggagcgc ttgcggggcg aggagctcga acaggcttct
     3961 gacttggagc tcgcgcgcct cgcgcgtgaa ggcgacgagc ctgccttcgc tgagatagtc
     4021 cggcgctacg gcccgcgcgt cttccgcgtg gcaggccgct tcttcaggcg gcccgagcag
     4081 gtcgaggagg ccgcgcagga gattttccta cgcgccttca cgcagctcga atcgttcgag
     4141 gggcgcggct ctttggaagg atggctcacg cgtatagcga cgacgacgag cctcaacatg
     4201 ctgcgcggcg cgcgccgaag gcccgagctg tccatctccg acctgacgga ggacgagggc
     4261 gcgtggctcg acgagaagac ggcctcgggc gcggccgagc gtcaccacgc ggccgagcgc
     4321 ggcgccgtcg cggccgatct ggccgagaag gtcttgggga cgatgtcggc ggacgaccgt
     4381 ctggtgctaa cgctggttga cggcgaggag atgccggtca gggacgtggc ggagatgacg
     4441 ggctggtctg agtcgaatgt gaaggtgaag gcgtttcgag cgcggcgccg gatgcgcgag
     4501 gcggtggaga aactgctcgg gcgcggcggc ggccgggaaa gagttggcaa gggatgaaag
     4561 acgggcacat aacagagatt ctcgacggcg cgcc
//
LOCUS       DASPKR010000176         3174 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1187282, whole genome shotgun sequence.
ACCESSION   DASPKR010000176 DASPKR010000000
VERSION     DASPKR010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3174)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3174
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1187282"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1531)
                     /locus_tag="VD968_04925"
     CDS             complement(<1..1531)
                     /locus_tag="VD968_04925"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HYE13767.1"
                     /translation="MRILKSSTFKSLAVSVCVSLCVAALWGGGLLDSLCEVFLLKSPA
                     GASVPPQWWAALLLVLGAGAGAAYAVERAGACRAALFVGCAGAAACVASLAASKLLQL
                     DVVFAPTMLAASLSLFAAQARRLWEIDAALTRSVQRVASRPSALEGRGANARLMCGLK
                     LLATVLPLDEAVIFRLDAAGLPEQAARLRTESNGAAAALPGSPEPDRNDAWREGVALC
                     ERAVRSRSLATREGAAGTAVALPLEHDGAAVGALLLRLRGGFDETDRPLLANVSAQFA
                     RDLQRDEARSLDVPQPPQTFASTRAARQRLESVGVLSGLLTEQGFAAHALSEARDAHA
                     VAYLDGTLACVNPRMLEAARVTAAECRALDLFGLLERFRAGVFDEPSIAVRRVLQTGQ
                     PYERELTYAERGQTLALRIALVTDAAFSKETPARAAKQEGASALPLCLAVTVRDVTRI
                     KEYEKLKSDMLSLMSHELRTPITSINGFAELLMADENVPEESREFLGIISSESQRLTR
                     MI"
     gene            complement(1647..3056)
                     /gene="selA"
                     /locus_tag="VD968_04930"
     CDS             complement(1647..3056)
                     /gene="selA"
                     /locus_tag="VD968_04930"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004125 - L-seryl-tRNA(Sec) selenium
                     transferase activity [Evidence IEA];
                     GO_process: GO:0016260 - selenocysteine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HYE13768.1"
                     /translation="MPEPDSAQDLSALPSVDALLRTPEARALRGRLGAGHLTTLARAV
                     TGELREELRARDGSPSREELLAEGARRLTLSAERELSSGLRRVINATGVVLHTNLGRA
                     PLSESARRAVSEEAAGYCTLEYDTETGARGRRGARAEELLAALAGAEAALVVNNCAAA
                     ALLVLAALGRGGEAVVSRGELVEIGGDFRVPDVMAQSGVRMVEVGTTNRTRLSDYEAA
                     VSDSTRVIVRVHPSNYRIVGFTSAPPLGELAELAHSRGLLLYEDAGSGALIDLAPHGL
                     AGEPVISQSVADGADVVTFSGDKLLGSAQAGLVVGRREVIERLRRFPLYRALRADKLA
                     LAALEATLEAYRRGDAAREVPALRMLSATRDEMEGRARAFARQLGERVGAGALTPEVI
                     EGRSAVGGGSAPTTHPPTALVALSHATLSAAALDERLRRSRPPVVARILDDRVVIDLR
                     TVAETEESELLEALAGIQF"
BASE COUNT          485 a         1132 c         1139 g          418 t
ORIGIN      
        1 ctatcatgcg cgtcaggcgc tgcgactccg agctgatgat gccgaggaac tcgcgcgact
       61 cctcggggac gttctcgtcg gccatgagga gttcggcgaa gccgttaatg ctcgtgatcg
      121 gcgtgcgcag ctcgtgcgac attaaagaca gcatgtcgct cttgagtttc tcgtactcct
      181 tgatgcgcgt cacgtccctg accgtcacgg cgaggcagag cgggagcgcc gacgcgccct
      241 cctgcttcgc cgcccgcgcg ggcgtctcct tcgagaaggc ggcgtcggtg acgagcgcga
      301 tgcggagcgc gagcgtctgg ccgcgctcgg cgtaggtcag ctcgcgctcg taaggctgcc
      361 ccgtctggag cactcggcgc acggctatcg agggctcgtc gaagacgccc gcgcggaagc
      421 gctcgagcag cccgaagagg tcgagcgcgc ggcactcggc cgccgtgacg cgcgccgctt
      481 cgagcatgcg agggttgacg caggcgagcg tgccgtcgag gtaagcgacg gcgtgcgcgt
      541 cgcgcgcttc cgagagggcg tgcgcagcga agccctgctc ggttagcagc cccgagagca
      601 cgcccacgga ttcgagccgc tggcgcgcgg cacgcgtcga ggcgaaagtc tgcgggggct
      661 gcggcacgtc gagcgagcgg gcctcgtcgc gctgaaggtc gcgcgcgaac tgcgcgctca
      721 cgttcgcgag cagcggccgg tcagtctcgt cgaagccccc gcgcagccga agcagcagcg
      781 ccccgacggc ggcgccgtca tgttcgagcg gcagcgcgac ggccgtcccc gcggcgccct
      841 cgcgcgtagc cagcgagcgc gaccggacgg ctcgctcgca gagggccacg ccctcgcgcc
      901 atgcgtcgtt cctgtccggc tcgggcgagc ccggcagcgc cgccgccgcg ccgttcgact
      961 ccgtgcgcag tcgcgccgcc tgctcgggca gccccgccgc gtcgaggcgg aatatcacgg
     1021 cctcgtccag cggcagcacg gtcgccagaa gcttcagccc gcacatcaaa cgagcgttcg
     1081 cgccgcggcc ttccagcgcc gaagggcgcg acgccacgcg ttgcacgctg cgagtcagag
     1141 ccgcgtcaat ctcccagagc ctgcgcgcct gcgcggcgaa gagcgagagc gacgccgcga
     1201 gcatcgtcgg cgcgaacacc acgtcgagtt gcaagagctt cgacgccgcc aaactcgcga
     1261 cgcacgccgc cgcccccgca cagccgacga acaaggccgc gcggcacgct cccgcgcgct
     1321 cgacagcgta ggccgcgccc gctcccgctc ccaggacgag cagaagcgcc gcccaccact
     1381 gcggcggcac gctcgcgccc gcgggggact tgagcaggaa gacctcgcac agcgagtcga
     1441 gcaagccccc gccccaaagc gcggccacgc acagcgacac gcacacagag acggcgagcg
     1501 acttgaaggt tgacgacttt aatattctca aggcttaagg gcggggcaag gcttcggaag
     1561 gaagttccca gactgcgggc cggcgcgcct gtctcggccg ccacaaacat catacacggc
     1621 gtcagcgcgc ccgttcaaga ggagctttag aactgtatgc cggcgagagc ttcgaggagt
     1681 tcgctctctt cggtttcggc cactgtgcgc aggtctatga cgacgcggtc gtcgagtatg
     1741 cgtgcgacga cgggcgggcg cgagcgccgc agcctctcgt cgagcgccgc ggcggagagc
     1801 gtcgcgtgcg agagcgcgac gagcgcggtg ggcgggtgcg tcgtcggcgc agagccgccg
     1861 cccacggccg agcggccttc gattacttcg ggcgtgagcg cgccagcgcc gacgcgctcg
     1921 ccgagttggc gggcgaacgc gcgggcgcgc ccctccattt cgtcgcgcgt ggcggagagc
     1981 atgcgaagcg cagggacttc gcgcgccgcg tcgccgcgcc tgtaggcttc gagcgtggct
     2041 tccagcgcgg cgagcgcgag cttgtcggcg cggagcgccc tgtagagcgg gaaccgccgc
     2101 agccgctcga ttacctcgcg gcggccgacg acgaggcccg cctgcgccga gcccaagagc
     2161 ttgtcgccgc tgaacgtcac aacgtcggcg ccgtccgcga cggactgact tatgaccggc
     2221 tcgcccgcga ggccgtgggg cgcgaggtca atgagggcgc cggagcccgc gtcctcgtag
     2281 agcagcaggc cgcgggagtg tgcgagctcg gcaagctcgc cgagcggggg cgccgacgtg
     2341 aagccgacga tgcggtagtt cgacgggtgg acgcgcacga tcacgcgcgt cgaatcgctg
     2401 acggccgcct cgtagtcgga gagccgcgtg cggtttgtcg tcccgacctc gaccatgcgc
     2461 acgcccgact gcgccatcac gtcggggacg cggaagtcac ctcctatctc gaccagctcg
     2521 ccgcgcgaga ctacggcctc gccgccgcgc ccgagcgccg cgagcacgag cagggccgcc
     2581 gcggcgcagt tgttgacgac gagcgcggct tccgcgcccg cgagcgcggc tagaagctct
     2641 tcggcacgcg cgccgcgtcg cccgcgcgcg ccggtctcgg tgtcgtactc gagcgtgcag
     2701 taaccggcgg cctcctcgga gaccgcgcgc cgcgccgact ccgagagcgg cgcgcgaccg
     2761 aggttcgtgt gcagcacgac gcccgtcgcg tttattacgc ggcgcaggcc ggacgatagc
     2821 tcgcgctcgg ccgagagagt gaggcggcgc gcgccctccg cgagcaactc ctcgcgcgag
     2881 ggcgagccgt cgcgcgcgcg cagctcttcg cgcagttcgc ccgtcacggc ccgcgcgagc
     2941 gtagtcaggt gtccggcgcc caagcgcccg cgcaatgcgc gcgcctcggg cgttcgcagc
     3001 agtgcgtcca ccgaggggag cgcgctcaag tcttgggccg aatccggctc gggcatcggg
     3061 aagggtagtc agaagctaga cgttggtgat aatttctaaa gtgcgcccgt cgcgcggtcg
     3121 gtattctacg ccgcggcgcg ccccttagag aaaccgaaat gagcaacccc caca
//
LOCUS       DASPKR010000177         4057 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1702778, whole genome shotgun sequence.
ACCESSION   DASPKR010000177 DASPKR010000000
VERSION     DASPKR010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4057)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4057
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1702778"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1225
                     /locus_tag="VD968_04935"
     CDS             <1..1225
                     /locus_tag="VD968_04935"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYE13769.1"
                     /translation="KVGIYGDLSGQTSSFGQSTKNGAVMAIEEINAAGGINGRKIEWV
                     MEDDQGQPAQAATVVTKLINQDRVHAILGEVASTNSLAAAPKAQEAKIPMITPSSTNP
                     KVTQVGDYIFRVCFTDDFQGAVAAKFAANTLKAKKAAILGDFNSDYSKGMSQYFVQEF
                     TGSGGQIIERQTYTQTDADFKGQLTAIRAAAPDVIFVPGYYGQVGVIAKQAKELGITA
                     PLLGGDGWDAPQLWDLGGTALNGAYMVNHYSIDDPSPAIKKFVDAYRKRYNGTDPDAI
                     AALGYDAMNVLADAIRRSGSTCPAKLRDAIAQTANFTGVTGAITLNQNRDAVKPAVVF
                     ELRDRKFIYKETIQPSGGAAGSASPGASPAAAASPVGGNANTGAATNGNAATNANANA
                     AGAGTTGGNQGNANH"
     gene            1242..2159
                     /locus_tag="VD968_04940"
     CDS             1242..2159
                     /locus_tag="VD968_04940"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYE13770.1"
                     /translation="MDTFVQQLINGLTVGSIYALIALGYTMVYGILRLINFAHGDVYM
                     IGAFVGFFLAHGLGFAAEPSFLGLGVTLVGAMVAAALVGMAIERFAYRPVRKYARMTT
                     LITAIGVSLLIENLGVVIFGNAPRAFPSLIENNQYTLFGKAAISSTQLLIFGVSIVLM
                     LILQWIVYRTKVGTAMRAVSFNLNSAKLMGINTDAIIVFTFALGSALAAAGGVLTAQY
                     NPTIYPLMGIITGLKAFVAAVLGGIGNIPGAVLGGLLIGAAETLVVGYGQLVGIPSTY
                     RDAVAFAILILVLLFRPSGLLGTTVQEKV"
     gene            2226..3362
                     /locus_tag="VD968_04945"
     CDS             2226..3362
                     /locus_tag="VD968_04945"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HYE13771.1"
                     /translation="MPGFAKRVLSVAVIAAALFAASALLSDEGLFGFGVPRYWAHVLM
                     LAGINVTLAVSLNLINGFTGQFSIGHAGFMAIGAYASAYLTVYHGQAWERQLSGAVGE
                     TLATALVFLLALLVGAVVAGLAGLVVGVPSLRLRGDYLAIVTLGFAEIIRIVILNLDV
                     VGGATGFTVPGRANFLWVGSFAVITILVVHNVVRSDAGRALISIREDELAAEAMGINS
                     TRYKVLSFVIGSMFAGIAGALFGHYTKFLSTADFTFLRSFEIIIMIVLGGMGSITGSV
                     LGALVITILPEFLRQLPAVGGYNLADLRLVIYSALLILIMLTRPQGVLGEREFGLHWL
                     RRAQKAPEGDKQAGEEKGVPITQEPGSVVRNEAGRDAVGGTEER"
     gene            3359..>4057
                     /locus_tag="VD968_04950"
     CDS             3359..>4057
                     /locus_tag="VD968_04950"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE13772.1"
                     /translation="MSREPEPSAVRATKEDGVVAEAARTARSQEVTGPSGVVLRTDKA
                     TIRFGGLVAVNELDMAVREGEIYGLIGPNGAGKTTIFNLLTGVYKPTSGEIYFHGKRV
                     DGLRPYEIARRGVSRTFQNIRLFPGMTVLENVMTACHLHSRQSLADAVLRTPRFARDE
                     REHRDFCMELLAIFDLARFKDEGGTSLPYGNQRRLEIVRALATRPKLLLLDEPAAGMN
                     PSEQDDLLNLIRQIR"
BASE COUNT          698 a         1420 c         1280 g          659 t
ORIGIN      
        1 aaaggtcggc atctacggcg acctctcggg gcagacctcc agcttcgggc agtccacgaa
       61 gaacggcgcc gtcatggcga ttgaggagat caacgccgcg ggcggcatca acggccggaa
      121 gatcgagtgg gtgatggagg atgaccaggg ccagcccgcg caagccgcca cggtcgtcac
      181 caagctaatc aaccaggacc gcgtccacgc catcctcggc gaggtggcct cgacgaacag
      241 cctcgccgcc gcgccgaagg cgcaagaggc gaagattccg atgataacgc cctcgtccac
      301 aaacccgaag gtgacgcagg tgggcgacta catcttccgc gtctgcttca cggacgactt
      361 ccaaggcgcg gtcgctgcca agttcgccgc aaacaccctt aaggcgaaga aggccgccat
      421 actcggcgac ttcaactccg actactcgaa gggcatgagc cagtacttcg tacaggagtt
      481 cactggctcg ggcggtcaga taatcgagcg gcagacctac acgcagaccg acgccgactt
      541 caaggggcag ctcacggcca tacgcgccgc cgcgcccgac gtaatcttcg tccccggcta
      601 ctacgggcag gtcggcgtca tcgccaagca ggccaaggag cttggcatca cggcgcccct
      661 cctgggcggc gacggctggg acgcgccgca gctctgggac ctgggcggga cggcgctgaa
      721 cggcgcctac atggtcaacc actattcgat tgacgacccg agcccggcga ttaagaagtt
      781 cgtagatgcc taccggaagc gctacaacgg cacagacccg gacgccatcg ccgcgctcgg
      841 ttacgacgcg atgaacgtgc tcgccgacgc catacgccgc tccggctcga cctgcccggc
      901 gaagctgcgc gacgccatcg cgcagacggc taacttcacg ggcgtcaccg gcgcgataac
      961 cctcaaccag aaccgcgacg ccgtcaaacc cgccgtcgtc ttcgagctgc gcgaccgcaa
     1021 gttcatctac aaggagacca tacagccttc gggcggcgcg gccggctccg cctcgcccgg
     1081 agcgtcgcca gcggccgcgg cttcgcccgt aggcgggaac gcaaacaccg gcgcggctac
     1141 gaacggcaac gcggcgacta acgcgaacgc gaacgcggcc ggcgccggca cgaccggcgg
     1201 caaccagggg aacgcgaacc actagccgga ggccgggacg catggacacc ttcgttcagc
     1261 aactcatcaa cggcctgacc gtcggctcga tctacgcgct catcgcgctc ggctacacga
     1321 tggtttacgg catcctccgg ctcatcaact tcgcgcacgg cgacgtgtac atgatcggcg
     1381 cgttcgtcgg cttcttcctc gcccacgggc tcggtttcgc cgccgagccg tcgttcctcg
     1441 gcctcggggt gacgctcgtc ggcgcgatgg tcgcggcggc gctggtcggg atggcgatag
     1501 agcgcttcgc ctaccggccc gtgcgcaagt acgcgcgcat gacgacgctg ataaccgcaa
     1561 tcggcgtctc gctcctcata gagaacctcg gcgtcgtcat cttcggtaac gcgccgcgcg
     1621 ccttccccag cctcatagag aacaatcagt acacactctt cgggaaggcc gcgatatcca
     1681 gcacccagtt gctcatcttc ggcgtctcca tcgtgctgat gctcatcttg cagtggatcg
     1741 tctaccggac gaaggtcggg acggcgatgc gcgccgtctc cttcaacctc aactcggcga
     1801 agctgatggg catcaacacc gacgccatca tcgtcttcac cttcgcgctc ggctcggcgc
     1861 tggccgcggc cggcggggtg ctcacggcgc aatacaaccc gaccatctac ccgctgatgg
     1921 gcatcatcac gggcctgaag gctttcgtag cggccgtgct cggcggcata ggcaacatcc
     1981 ccggcgccgt cctgggcggg ctgctcatcg gcgcggccga gacgctcgta gtcggctacg
     2041 gccaactcgt cggcatcccc tcgacctacc gcgacgccgt ggccttcgcg atactgattc
     2101 tcgtcctgct cttccgcccg tcgggcctgc tcggcacgac cgtgcaggag aaggtatgaa
     2161 agtagtgggt gacgagttag aggctcctac tcgtcacccg tcacccacca ctcatcactg
     2221 aatctatgcc aggtttcgct aaaagggtgt tgagcgtggc cgtcatcgcc gccgcgctct
     2281 tcgccgcgag cgcgctgctg agcgacgagg ggctgttcgg gttcggcgtg ccgcgctact
     2341 gggcgcacgt cctgatgctg gcgggcatca acgtcaccct cgcagtctcg ctgaacctca
     2401 tcaacgggtt tacgggccag ttctcaatcg gccacgcggg cttcatggcg ataggggcct
     2461 acgcgtcggc ctacctgacc gtctatcacg ggcaggcatg ggagcggcag ctctcgggcg
     2521 cggtcggcga gacgcttgcg accgcgctcg tcttcctgct ggcgctcctg gtcggcgccg
     2581 tggtcgctgg gctggcgggg ctcgtagtcg gcgtaccctc gctgcgcctg cgcggcgact
     2641 acctcgccat cgtcacgctc ggcttcgccg agattatccg catcgtcatc ctgaacctcg
     2701 acgtggtcgg aggcgccacc ggcttcaccg tgccgggccg cgccaacttc ctctgggtcg
     2761 gctccttcgc cgtcataacc atactcgtcg tccacaacgt cgtccgctct gacgcggggc
     2821 gcgcgctcat ctccatacgc gaggacgagc tcgcggccga ggcgatgggc atcaactcga
     2881 cgcgctacaa ggtgctctcg ttcgtcatcg gctcgatgtt cgccggcatc gccggggcgc
     2941 tcttcggcca ctacacgaag ttcctctcga cggccgactt caccttcctg cgctcgttcg
     3001 agatcatcat aatgatcgtg ctcggcggta tgggctcgat aacggggtcg gtgctgggcg
     3061 cgctcgtcat cacgatactg cccgagttcc ttcgccaact gccggcggtc ggcggctaca
     3121 acctcgcgga cctgcgcctc gtcatctact ccgcgctcct gatactcata atgctcacgc
     3181 gcccgcaagg ggtgctgggc gagcgcgagt tcgggctgca ctggctgcgg cgcgcgcaga
     3241 aggcgcccga gggcgacaag caggccggcg aggagaaggg cgtccccatc acgcaggagc
     3301 ccggaagcgt cgtccgaaac gaggcgggcc gcgacgccgt cggggggacg gaggagagat
     3361 gagcagggag ccggagccga gcgcggtgcg cgcgacgaag gaggacggcg tcgtggccga
     3421 ggccgcgcgc actgcgcgct cgcaggaggt cacgggccct agcggcgtgg tgctgcgaac
     3481 cgacaaggcg acaatacgct tcggcggcct cgtcgccgtc aacgagctgg acatggccgt
     3541 gcgcgagggc gaaatctacg ggctcatcgg cccgaacggc gcgggcaaga cgaccatctt
     3601 caacctgctt accggcgtct ataagccgac ctcgggcgag atttacttcc acggcaagcg
     3661 cgttgacggc ctccgcccct acgagatcgc gcgccgcggc gtgtcgcgca cgttccagaa
     3721 catacgcctc ttccccggca tgaccgtgct ggagaacgtc atgactgcct gccacctgca
     3781 ctcgcggcag tcgctcgccg acgccgtctt gcgcactccg cgcttcgcgc gcgacgagcg
     3841 cgagcaccgc gacttctgca tggagcttct ggcgatcttc gacctcgcgc gctttaagga
     3901 cgagggcggc acctccctgc cttacggcaa ccagcgccgc ctggagatcg tgcgcgcgct
     3961 cgccacgcgc cccaaactcc tactgctcga cgagcccgcg gccggcatga acccgtcgga
     4021 gcaggacgac ctcctgaacc tgatacgcca gatacgc
//
LOCUS       DASPKR010000178         3009 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_22196, whole genome shotgun sequence.
ACCESSION   DASPKR010000178 DASPKR010000000
VERSION     DASPKR010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3009)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3009
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22196"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..682
                     /locus_tag="VD968_04955"
     CDS             <1..682
                     /locus_tag="VD968_04955"
                     /inference="COORDINATES: protein motif:HMM:NF014907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13773.1"
                     /translation="QREINERLLKQEGTENQYVIHEEMGKWMTDNVTVVRYNDRLKAT
                     DEKLQELLDRFKRISLNDSNMWATHALPHARQLHNMLQLARVITLGALNRNESRGAHY
                     KPDFPNRDDENFLKTTIAEYSDEGPVFSWEPVDVSLIKPRKRDYSKGKQEQGKAASGG
                     RAESSPAKEGAAQVPASGWEQRPPNTSGPATWGQDKEKVDRSVSGDVETRSERGAPIE
                     DAGGKNPV"
     gene            726..1505
                     /gene="sdhB"
                     /locus_tag="VD968_04960"
     CDS             726..1505
                     /gene="sdhB"
                     /locus_tag="VD968_04960"
                     /inference="COORDINATES: protein motif:HMM:NF006391.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HYE13774.1"
                     /translation="MSEQTNGRQTKAAPREVVLRVRRRDRQGAEAYWEEFAIPHRPNL
                     NIISCLMEIRKNPVTRDGKRTTPPVWDMNCLEQVCGICTMVINGRARQSCSALVDQLE
                     QPITLEPMRKFPNVRDLVVDRSEMFEHLKRVKAWVEIDGTHDLGPGPRMDQDDVAERY
                     AYSRCMTCGCCLEACPQYGDGNYIGPQAIAQVRYQNMHPTGKMTRDERLSAIMGEDGI
                     TNCGNAQNCVRACPMSIPLTKAIYEENRETVIYGLFGWLRK"
     gene            1729..>3009
                     /locus_tag="VD968_04965"
     CDS             1729..>3009
                     /locus_tag="VD968_04965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13775.1"
                     /translation="MSKRTRIKSVVAALYVIAAIAAALTGSRAGAQDRSKPSAEPQSS
                     FTPSVEEPFDVVLRRDKAARPRVMAAARKLLEERYDLSRRVDPAVKMTRGKPVPVGPT
                     ARLKRGVTWEQLGRMTPAEIREKDLFPYLPLPHVSHPVGGMVFPQVHIKVQPRLERFD
                     MEFDIPDHFLPEFPPAIFLTTRPDLGDVSKGQLITIENFYELFNGILNPKQLDGVRLL
                     VTQFPQQQFNATADRKTERADGMQGVTCFDCHVNGHTLGAAHLVGDIRPQENRRRIET
                     PSLRGVNIQRLFGSQRALRTVEDFTEFEQRAAYFDGDPVMAAKKGLNILERGHQVHNM
                     AEFQELLDFPPAPKLNVFGRLDRSKATPAEARGEDLFFGKAKCAECHTPPYYTDGTMH
                     DLQVERFFRPRMEGGMMITKQGPIKTFPLRGIKES"
BASE COUNT          611 a         1026 c          942 g          430 t
ORIGIN      
        1 gcagcgcgag ataaacgagc ggctcctgaa gcaggagggg actgagaacc agtacgtcat
       61 acacgaggag atgggcaagt ggatgacgga caacgtgacg gtcgtgcgct acaacgaccg
      121 cctgaaggcg acggacgaga agctgcagga gttgctcgac cgcttcaagc gcatctcgct
      181 caacgactcg aacatgtggg cgacgcacgc gctcccgcac gcccggcagc tacacaacat
      241 gctccagctc gcgcgcgtca tcacgctcgg cgccttgaac cgcaacgagt cgcgcggcgc
      301 gcactacaag cccgacttcc ccaaccgcga cgacgagaac ttcctcaaga ccaccatcgc
      361 cgagtattcg gacgaggggc cggtcttctc ctgggagcca gtggacgtgt ctttgattaa
      421 gccccgcaag cgcgactaca gcaagggcaa gcaggagcag ggcaaggcgg cctcgggcgg
      481 ccgggccgaa agctcgcccg ctaaagaagg ggccgcgcaa gtccccgcct cgggctggga
      541 gcagaggccg ccgaacactt cggggcctgc cacctggggg caggacaagg agaaggttga
      601 ccgctcagtc tccggcgacg tggagacccg cagcgagcgc ggcgcgccga ttgaagacgc
      661 gggcggcaag aaccccgtct agctgagggt cggccgcact aacaacataa ggttgacttg
      721 aaggtatgag cgaacagacg aacggccggc agacgaaagc ggcgccgcgg gaagtagtcc
      781 tgcgcgtcag gcgcagggac aggcagggcg cggaggcgta ctgggaggag ttcgccatac
      841 cccaccgccc gaacctcaac atcatctcct gcctgatgga gataaggaag aacccagtca
      901 cccgcgacgg gaagcgcacg acgccgcccg tctgggacat gaactgcctg gagcaggtct
      961 gcggcatctg cacgatggtc ataaacgggc gcgcgcgcca gtcgtgctcg gcgctcgttg
     1021 accagctgga gcagcccatc acgctagagc ccatgcgtaa attcccgaac gtgcgcgacc
     1081 tcgtagttga ccgctccgag atgttcgagc acctcaagcg ggtgaaggcg tgggtcgaga
     1141 ttgacggcac gcacgacctc ggccccggcc ctcgcatgga tcaggacgac gtggccgagc
     1201 gctacgccta ctcccgctgc atgacgtgcg gctgctgcct cgaagcctgc ccgcagtacg
     1261 gcgacggcaa ctacattggc ccgcaggcca tcgcgcaggt tcgctaccag aacatgcacc
     1321 cgacggggaa gatgacgcgc gacgagcgcc tgtcggccat catgggcgag gatggcatta
     1381 ccaactgtgg gaacgcgcag aactgcgtcc gggcatgccc catgtcaatc ccgctcacga
     1441 aggccatcta cgaggagaac cgtgagacgg tcatctacgg cctgttcggc tggctgagga
     1501 agtagggacg cccggacgcc ctgctaccgc cgtcacaggc gcgccccgcg ggcctgtgac
     1561 gacaggcccg ccgagattat aaattccccc ccacaagctc tagcccgaca gacttaactc
     1621 aaacgccggc cggacccgag gcccgcgcgc cggcccgacc ttctccttcc agcgaacgag
     1681 ccacgggcgg caggccgtaa ccctcgcgac ccttcggaaa ggagtgtcat gagcaagaga
     1741 acgcgaatca agtcagtcgt cgctgccctt tacgtaatag cggccatcgc ggccgcgctg
     1801 accggctcgc gcgcgggagc gcaggacagg tcgaagcctt cggccgagcc gcagtcctcc
     1861 ttcacccctt cggtcgagga gcccttcgat gtcgtgctca ggcgcgacaa ggcagcgcgc
     1921 ccgcgcgtga tggccgccgc gcgaaaactg ttagaagaac gctatgacct ctctcggcgc
     1981 gttgacccgg ccgttaagat gacgcgcggc aagcccgttc cggtcggccc gaccgcgcgc
     2041 cttaagcgcg gcgttacgtg ggagcagctc gggcgtatga cgcccgccga gatacgcgag
     2101 aaagacctct tcccgtacct gccgctcccg cacgtcagcc accccgtcgg cgggatggtc
     2161 ttcccgcagg ttcacatcaa ggtgcagccg cggcttgagc gcttcgacat ggagttcgac
     2221 atacccgacc acttcctgcc ggagttcccg cccgcgatct tcctgacgac gcggcccgac
     2281 ctcggcgacg tgtcgaaggg gcaactcatc accatcgaga acttttacga actcttcaac
     2341 gggatactca accctaagca gctcgacggc gtgcggctgc tcgtgacgca gttcccgcag
     2401 cagcagttca acgcgacggc cgaccgcaag accgagcgcg ccgacggcat gcagggcgtc
     2461 acctgcttcg actgtcacgt caacggccac acgctggggg ccgcccacct cgtcggcgac
     2521 atacgcccgc aggagaaccg ccgccgcatc gagacaccga gcctccgcgg cgtcaacata
     2581 cagcgcctct tcggctcgca gcgcgccctt cgcacggtcg aggacttcac cgagttcgag
     2641 cagcgggccg catacttcga cggcgacccc gttatggcgg caaagaaggg cctgaacatt
     2701 ctcgagcgcg gccaccaggt tcacaacatg gccgagttcc aggagcttct ggactttccg
     2761 cccgcgccca agctcaacgt ctttggccgg ctcgaccgct cgaaggcgac gcccgccgag
     2821 gcgcgcggcg aagacctctt cttcggcaag gccaagtgcg ccgagtgcca cactccgccc
     2881 tactacaccg acggcactat gcacgaccta caggtcgagc gcttcttccg cccgcgcatg
     2941 gaaggcggga tgatgattac caagcagggg ccgattaaga ccttccctct gcgcggcatc
     3001 aaagagtcg
//
LOCUS       DASPKR010000179         3385 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_798984, whole genome shotgun sequence.
ACCESSION   DASPKR010000179 DASPKR010000000
VERSION     DASPKR010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3385)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3385
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_798984"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..492)
                     /locus_tag="VD968_04970"
     CDS             complement(<1..492)
                     /locus_tag="VD968_04970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13776.1"
                     /translation="MPVSRRRFIKRGAGFVSAGVILPHVWLREARGQAPAAARKLVLI
                     QLQGGNDGLNTLIPFTDPKYYQFRPTLALSESELFDAQGRSTILGGEPFGLHPSLGEM
                     KSLYDAGKVAVLRGVGYPNPSLSHFFSMDIWHTADIDGNNRIGWLGSYADMALGDVAG
                     LPAI"
     gene            complement(502..1947)
                     /locus_tag="VD968_04975"
     CDS             complement(502..1947)
                     /locus_tag="VD968_04975"
                     /inference="COORDINATES: protein motif:HMM:NF020390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 domain-containing protein"
                     /protein_id="HYE13777.1"
                     /translation="MTILSYNQAAHLLRRMGFGGPPSEIEGLVALGREGAVDYLLNYD
                     RIDNGPMEEVMSQCFDFGDGFDREKFSAGGGELRRWWFTRMVYTRRQFEEKMTLFWHN
                     YFATGTSKVPAQHMCLQNLTLRAHATAQFDTLLLKVAQDPAMIVWLDNQANVVGSPNE
                     NFARELQELFTTGIRDVVTGEANYTEADVREVARAFTGWRCRRTDRFNKFAMEFYIDP
                     ARHDEGDKTIFGQTANFNGQDVVQLLAARRSTARFLTKKLFEFFVHPLTHSPADRALI
                     DSFADVYVASGHSVKELVRSIFTSDHFFSSRAMFALIKMPVEFIVGSIRMLGATYLPG
                     PPALKAPQPLSVPSVFMGQEILNPPDVAGWDLNMGWINTASMMERFNFANALLANRDT
                     TSVGVFVTNDQLRSYASPDITETVQNFLSRLGPIKVNKETVRQLRYYLSMDNKGAITS
                     GSGFTLNDRTVDKKLRGLARLIMCMPEFQLN"
     gene            complement(1999..2937)
                     /locus_tag="VD968_04980"
     CDS             complement(1999..2937)
                     /locus_tag="VD968_04980"
                     /inference="COORDINATES: protein motif:HMM:NF014600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HYE13778.1"
                     /translation="MFSAALAVLLALAASVARPSAGQSQAAQRASADGASADGAVTPT
                     AAVRERRAAPAAEPSAFEPAARRNLVLKYELSWAFGGKQQRGWYLYSPLITRLIGAEG
                     EEAAGDHFASALARWQRSAGLEASGVLDDETLYRMVSAWQGARLKDKSLPTPDQLFTA
                     PASDFYDASRPDELRQVERETYAAYKRMVAAAAADPSLGLKLSADGGLAPEEKFFKII
                     SSFRSRAHQERLRRQSPGSGRAGLAVNSPHFTGRALDIYVGGEPVETRDSNRALQVQT
                     RAYKWLVRNGDKFGFRPYYYEPWHWEYVGRTASTGR"
     gene            complement(3114..>3385)
                     /locus_tag="VD968_04985"
     CDS             complement(3114..>3385)
                     /locus_tag="VD968_04985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13779.1"
                     /translation="VEAVRALPCAARVTFHAALTDPLFSRFGGERILGLMKRMGLDES
                     EPVSHPLISGAVRKAQEKIEKKVHGELPVSSAEDWFKYNLRDGSL"
BASE COUNT          575 a         1077 c         1108 g          625 t
ORIGIN      
        1 gatggcgggc agccccgcca cgtcgccgag cgccatatcc gcgtaggagc cgagccagcc
       61 gatgcggtta ttaccgtcga tgtcggcggt gtgccatatg tccatcgaga agaagtgcga
      121 caggctgggg ttcgggtagc ctaccccacg cagcacggcc accttccctg cgtcgtagag
      181 cgacttcatc tcgccgaggg acgggtgcag gccgaacggc tcgccgccga ggatggtgga
      241 gcggccctgt gcgtcgaaca actccgactc gctcaaggcg agggtcggcc tgaactggta
      301 gtacttcggg tcagtgaagg gtatgagcgt gttcaggccg tcgttgccgc cctgaagctg
      361 tatcagtaca agcttgcgcg ccgcggccgg cgcctggccc cgcgcctcgc gcagccagac
      421 gtggggcagt atcacgccgg ccgacacgaa ccccgccccg cgcttgatga agcgcctcct
      481 acttacaggc ataagccact cctagttgag ctggaactcc ggcatgcaca tgatgaggcg
      541 ggccagcccg cgcagcttct tgtccactgt ccggtcgttg agggtgaatc ctgagccgga
      601 ggtgatggcg cccttgttgt ccatcgagag atagtacctc aactgcctga cggtctcttt
      661 gttcaccttt atcggcccga gccgcgagag gaagttttgg accgtctcgg tgatgtccgg
      721 gctggcgtag ctcctcaatt ggtcgttggt gacgaagacc ccgacgctcg tcgtgtcgcg
      781 gttcgccagc aacgcgttgg cgaagttgaa ccgctccatc atgctggccg tgtttatcca
      841 ccccatgttc aagtcccacc cggcaacgtc gggcgggttg aggatctcct gccccatgaa
      901 gaccgagggg actgagagcg gctgcggggc cttgagcgcg ggcgggccgg gcaggtacgt
      961 cgccccgagc atacgtatag acccgacgat gaactccacc ggcatcttta ttagagcgaa
     1021 catggcccgc gagctgaaga aatgatccga ggtgaagata ctccgaacca gttccttcac
     1081 tgagtggccg ctggcgacgt acacgtctgc aaagctgtct atgagcgccc tgtcggcggg
     1141 gctgtgggtc agcgggtgaa cgaagaattc gaagagtttt ttcgtcagga agcgtgcggt
     1201 ggagcggcgt gcggccagga gttgcacaac gtcttggccg ttgaagttcg cggtctgacc
     1261 gaagatggtc ttgtcgcctt cgtcgtgccg ggccgggtct atgtaaaact ccatcgcgaa
     1321 cttattaaac ctgtccgtcc tgcggcacct ccagcccgtg aaggcgcgcg ccacctccct
     1381 cacgtcggcc tccgtgtagt tggcctcgcc cgtcacgacg tcgcgtatgc ccgtggtgaa
     1441 gagttcctga agctcgcggg cgaagttctc gttcgggctc ccgacgacgt tcgcctggtt
     1501 gtcgagccag acgatcatgg ccgggtcttg cgcgaccttc aggagcagcg tgtcgaactg
     1561 cgctgtcgcg tgtgcgcgca gcgtgaggtt ctgtaggcac atgtgctgcg cgggcacctt
     1621 cgaagtgccc gtggcgaaat agttgtgcca gaacagagtc atcttctcct cgaactggcg
     1681 ccgcgtgtaa accatcctcg taaaccacca gcggcgcagc tcaccgccgc cggcgctgaa
     1741 cttctcgcgg tcgaacccgt ccccgaagtc gaagcactgg ctcatcacct cttccatcgg
     1801 gccgttgtca atccggtcgt agttgaggag gtagtccacc gccccctcgc gccccagcgc
     1861 gacgaggccc tctatctccg agggcgggcc gccgaagccc atccttctga gcagatgagc
     1921 cgcctggtta tagctcaaaa tcgtcatcgc agatttctct ggtgaggtta aggtaaggag
     1981 acccgttagg aggggaggct atcggcccgt gctagcagtt ctgcctacat attcccagtg
     2041 ccagggctca taataataag gccgaaaccc gaatttgtca ccgttcctga cgagccactt
     2101 gtaggcgcgc gtctggactt ggagggcgcg gttcgagtcc ctggtctcga ccggctcgcc
     2161 gcctacgtat atgtcgaggg cgcggcccgt gaagtgaggg ctgttgacgg cgaggccggc
     2221 gcggcccgag cccggcgact ggcggcgcag ccgctcctgg tgcgcgcgcg agcggaacga
     2281 ggagattatc ttgaagaact tctcctcggg cgcgagcccg ccgtccgcgg agagcttcaa
     2341 accgagcgaa gggtctgcgg ccgcggccgc gaccatccgc ttgtaggcgg cgtaggtctc
     2401 gcgctcgacc tgccgcaatt catcggggcg cgatgcgtcg tagaagtctg aagccggggc
     2461 cgtgaagagc tgatcaggcg tcggtaggct cttatccttg aggcgcgcgc cctgccacgc
     2521 ggagaccatg cggtagagcg tctcgtcgtc gagcacgccg ctcgcctcaa gccccgccga
     2581 gcgctgccag cgcgcgagcg ccgaggcgaa atggtcgccc gcggcctctt cgccttcggc
     2641 cccaatgagg cgcgtgataa gcggcgagta caagtaccag ccgcgctgct gcttaccgcc
     2701 gaacgcccag ctcagctcgt acttcagaac caggttgcgg cgcgcggccg gctcgaaggc
     2761 ggaaggctcc gcggcggggg cggctcgcct ttcgcgcacg gccgcggtgg gcgtcacggc
     2821 cccgtcggcg ctcgcgccgt cggccgaagc cctctgcgcc gcctgcgact ggcccgcgct
     2881 agggcgcgcg acggaagcgg cgagggcgag caggacggcc aaggccgccg agaacactac
     2941 cgcgttagct ttgtaattct tcattcccgc ccgaatactt agctgcctga aaggtttgtt
     3001 taaaaggtga ggtcggccct tgcgcgacag catatcagat gcccgagagc cccgcacggt
     3061 tcgacgggcc gggcggtctt tctgaaggcg gccgccgtcc gcaatcctta cgctcagagg
     3121 gagccgtcgc gcaggttgta cttgaaccag tcctcggccg agctaacggg cagctccccg
     3181 tgaaccttct tctctatctt ctcctgcgcc ttcctgacgg ccccgctgat gagagggtgc
     3241 gagacgggct ccgactcgtc gagacccatg cgcttcatca ggccgagaat cctctcgccg
     3301 ccgaagcgcg agaagagagg gtctgtcagc gcggcgtgga aggtcacgcg cgcggcgcag
     3361 gggagcgcgc gcacggcctc tacga
//
LOCUS       DASPKR010000180         4721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1317510, whole genome shotgun sequence.
ACCESSION   DASPKR010000180 DASPKR010000000
VERSION     DASPKR010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4721)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4721
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1317510"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1337)
                     /locus_tag="VD968_04990"
     CDS             complement(<1..1337)
                     /locus_tag="VD968_04990"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HYE13780.1"
                     /translation="MFERYTEKARRVIFFARYEASQFGAPAIEPEHLLLGLMREDKTL
                     TSRFLARAQASLEAIRKEIEGRAPLREKISTSVELPLAPETKRVLAFAHEESDRLQHR
                     HIGTEHLLLGLLREERSMAAEILYERGLRLNAVREEVSRQAGGEARMSPKKETPHLAE
                     FSRDLTEDAQNDKLDPLVGREGEIERLVQILCRRTKNNPVLIGEPGVGKTAIVEGLAQ
                     RIVTGDVPSFLENKRILSLDLSLIVAGTKYRGQFEERLKQIMRELVENPQYIVFIDEL
                     HTLVGAGSAEGSLDAANILKPALSRGEIQCIGATTPAEFRKSIEKDRSLERRFQAVKV
                     PPPSEEEAISILEGVRERYEAFHQVRYTDDAIEAAVYQSNRYIPDRFLPDKAIDVIDE
                     AGARVKLRARRDSMSGAAARNEIAERDYDSRSMYPKSFLSTSSPLTEEDEMLLS"
     gene            1561..3303
                     /locus_tag="VD968_04995"
     CDS             1561..3303
                     /locus_tag="VD968_04995"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13781.1"
                     /translation="MKRIANFMAASLFAASLAASALAQGAPDPAAHFNRGAEHHAAGR
                     LREAAEEYERAVRLKPDFFEAHMNLGLAHMQSGEFERAAESSRRAVSLRPDSPEAHVN
                     LGSAYAGAGKLAEAVKAFEQALRLKPDWPPALLALGAAHARAGRHDAAMAPLQRALEL
                     RPDDAVVHQHVAAAYSLAGRHDAAAEHFSRVTLLRPGSAPDLFNLGLALKSAGKFEEA
                     AAAFERGLAIKEDADAYFYLGMLHADAGRHEKAVEAYEKSVRLAPDAGGTSYNLGLSY
                     VRLGKHEKAAEAFARAVRLAPAHLDAHTKLFASLSLAGRYKEAAAAMEAYVRLRPEDP
                     EAHFQLGNTYMIAGEFEKALASLTEALRLKPDHELAQDRLKITRARMEGAAEAAALRD
                     KVEREPGNTQALARLAFLYYFTGRHDDSIEIFKKLLRLTPDDAEAHHRLAITYTEAGR
                     YEESIEHYKRVIQLKPPHHVLQWSLATAYGKSGRYEESIAPLKEALKLKPDFTHALYD
                     LGIAYTALGKHEEAAEAFRQLLRVEPRNADAYLKLGLAYLQLGDRLRAEQQYQILRDI
                     DRQAAAELLARLRR"
     gene            complement(3318..4010)
                     /locus_tag="VD968_05000"
     CDS             complement(3318..4010)
                     /locus_tag="VD968_05000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE13782.1"
                     /translation="MISEDMGLVVEGLRKSFPSPSGGRVEVLRGVSLAVGAGEAVAVV
                     GASGAGKTTLLHVLGGLEEAGAGVARAGDFLITGASVAELAAWRGRGVGFVFQSHRLL
                     TALTAEENVALPLMVARAGRREAMERAREMLGAVGLSERARHSPGELSGGERQRVAVA
                     RALVTRPRLVLADEPTGALDSRTGAEVGALLLGLCRASRACLLVATHNEALARTCDRA
                     LALLDGVVVESV"
     gene            complement(4007..>4721)
                     /locus_tag="VD968_05005"
     CDS             complement(4007..>4721)
                     /locus_tag="VD968_05005"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HYE13783.1"
                     /translation="LTGEPRGGAEGFAARSRRVRVAGLFRTGLFEYDSAWAYLSLEEA
                     GRAGAESAVVAVEARDIYASNEVAARVRSLLGPGWEAVDWREANRPLFSALELERRTV
                     AVIIMLIMILAALNITTTLALVVVERRADIAVLGAIGARARGVMAVFVIEGALIGAAG
                     AAFGVVLGLAACAAADHFGLVRLPPDVYSVSVVPLRPRAADVLLPALAALAVSLLATI
                     YPALQAARLRPAEALRHEG"
BASE COUNT          755 a         1748 c         1558 g          660 t
ORIGIN      
        1 gagagcagca tctcgtcctc ctcggtcagg ggcgagctgg tcgagaggaa gctcttcggg
       61 tacatcgagc ggctgtcgta gtcgcgctcg gctatctcgt tgcgcgccgc cgcgccgctc
      121 atcgagtcgc gccgcgcgcg cagcttgacg cgcgcgcccg cctcgtcgat cacgtcaatc
      181 gccttgtccg gcaggaagcg gtcggggatg tagcggttcg actgataaac cgcggcctcg
      241 atggcgtcgt cggtgtagcg aacctggtgg aaagcctcgt agcgctcgcg cacgccttcg
      301 aggatgctga tggcctcctc ctccgacggc ggcggcacct tgacggcctg gaagcgccgc
      361 tcgagcgagc ggtctttctc gattgacttg cggaactcgg cgggcgtggt ggcgcctatg
      421 cactgtatct cgccgcgcga gagggccggc ttgaggatgt tggccgcgtc tagcgagccc
      481 tcggccgagc ctgcccctac gagcgtgtgc agctcgtcta tgaagacgat gtactgcggg
      541 ttctcgacca gctcgcgcat tatctgcttg aggcgctcct cgaactggcc gcggtacttc
      601 gtgcccgcga cgatgagcga gaggtcgagc gagagtatgc gcttgttctc caaaaacgac
      661 ggcacgtcgc cggtgactat tctctgcgcg agcccctcga cgattgcggt cttccccacg
      721 cccggctcgc ctatcaggac ggggttgttc ttcgtccggc ggcagagaat ctgtacgagc
      781 cgctcaatct ccccctcgcg cccgacgagc gggtcgagct tgtcgttctg cgcgtcttcg
      841 gtcaggtcgc gcgagaactc cgcgaggtgc ggcgtctcct tcttcggcga catgcgcgcc
      901 tcgcccccgg cctgccgcga gacctcctcg cggactgcgt tcaagcgcaa gccccgctcg
      961 tagaggatct cggccgccat cgagcgctcc tcgcgcagga gcccgagcag caggtgctca
     1021 gtccctatgt gccggtgctg taggcggtcc gactcctcgt gcgcgaacgc aagcacccgc
     1081 ttcgtctcgg gcgccagcgg cagctcgacc gaagtggaaa tcttctcccg cagcggcgcc
     1141 cgcccctcga tctctttgcg tatggcttct agtgaggcct gcgcccgggc gaggaaccgg
     1201 gacgtgagcg tcttgtcctc gcgcattagg ccgagcagca ggtgctcggg ctctatggcg
     1261 ggggcgccga actggctggc ctcgtagcgg gcgaagaaga tcaccctccg cgccttctcc
     1321 gtgtatcgct cgaacataaa agctgttacc gaccgaaact gagttcctgg ataagtccga
     1381 aatgctttga agcggcgccc ggcccggcgg gatgtcggcc cgaataaacg gccgacgaac
     1441 accaacggca ttatatccta caccacgggc aaagccagag gggagaaaat ttcgggccgg
     1501 ccccgccggg ttccccgtaa cacgcgcgcg gtgttataac ctactgccgc gctccgccct
     1561 atgaaacgca ttgcgaactt catggccgcc tcgctcttcg ccgcttcgct cgccgcgtcg
     1621 gcgctggccc agggcgcgcc agacccggcc gcccacttca accgcggcgc cgagcaccac
     1681 gcggccggcc gcctgcgcga ggcggccgag gagtacgagc gcgccgtccg cctcaagccc
     1741 gacttcttcg aggcgcacat gaacctcggc ctcgcccaca tgcagtcggg cgagttcgag
     1801 cgcgcggccg agtcgtcgcg ccgcgccgtc tcgctgcggc ccgactcgcc cgaggcgcac
     1861 gtcaacctcg gctcggccta cgccggggca ggcaagctgg cggaggccgt gaaggctttc
     1921 gagcaggcgc ttaggctcaa gcccgactgg ccgcccgcgc tgctggccct cggcgccgcc
     1981 cacgcccgcg ccggccgcca cgacgcggcg atggcccctt tgcagcgcgc gctggagctg
     2041 cgccccgacg acgccgtcgt gcaccagcac gtcgcggccg cttactcact ggcggggcgg
     2101 cacgatgcgg cggccgagca cttcagccgc gtcacgctgc tcaggcccgg ctcggccccg
     2161 gacctcttca acctcggcct cgcgctcaag agcgcgggca agttcgaaga ggcggccgcg
     2221 gccttcgagc gagggctggc gataaaggag gacgcggacg cctacttcta cctcggcatg
     2281 ctgcacgccg acgcgggccg gcacgagaag gccgtcgagg cttacgagaa gtcggtgcgg
     2341 ctcgcgcccg acgccggagg caccagctac aacctcgggc tctcttacgt ccggctgggc
     2401 aagcacgaga aggcggccga agcattcgcg cgcgccgtgc gcctcgcgcc cgcgcacctc
     2461 gacgcgcaca cgaagctctt cgcgtctttg tcgctcgccg gccgctacaa ggaggcggcc
     2521 gcggcgatgg aggcgtacgt gcggctgcgc cccgaagacc cggaggcgca cttccagctc
     2581 ggcaacacct acatgatagc cggcgagttc gagaaggctt tggcctcgct cacggaggcg
     2641 ctcaggctca agcccgacca cgagctggcg caggacaggc tgaagatcac gcgcgcgcgc
     2701 atggagggcg cggccgaggc cgccgcgctc agggacaagg tcgagcgcga gccggggaac
     2761 acgcaggcgc tcgcccgcct cgccttcctc tactacttca cgggccggca cgacgactcg
     2821 atagaaatct tcaagaagct cctgcgcctc acgcccgacg acgccgaggc tcaccaccgc
     2881 ttggccatca cctacacaga ggccgggcgc tatgaggagt caatcgagca ttacaagcgc
     2941 gtcatacagc tcaagccccc gcaccacgtc ctccagtgga gcctcgcgac cgcctacggc
     3001 aagtccggcc gctacgagga gtcaatcgcg ccgctcaagg aggctttaaa gctcaagccc
     3061 gacttcacgc acgcgctcta cgacctcggc atcgcctaca ccgctctcgg caagcacgag
     3121 gaggcggccg aagccttccg ccaactgctg cgcgtcgagc cgcgcaacgc cgacgcctac
     3181 ctcaagctcg ggctcgccta cctgcaactc ggcgaccgcc tgcgggccga acagcagtac
     3241 cagatactcc gcgacataga ccggcaggcc gctgccgagc tgctcgcccg gctccggagg
     3301 tgaagaagcc cgcccggtca aacgctctcg acgacgaccc cgtccaggag cgcgagcgcg
     3361 cggtcgcacg tgcgcgcgag ggcctcgttg tgagtggcga cgagcaggca cgcgcgcgag
     3421 gcccggcaca gtcccagcag gagcgcgcct acctcggcgc ccgtgcgcga gtcgagggcg
     3481 ccggtcggct cgtccgcgag cacgagccgc ggccgggtga cgagcgcgcg ggcgaccgcg
     3541 acgcgctgac gctcgccgcc cgaaagctcg ccgggcgagt ggcgcgcgcg ctctgataga
     3601 ccgacggcac ccaacatctc tctcgcgcgc tccatcgcct cgcgccgccc cgcgcgcgcc
     3661 accatcaggg ggagcgcgac gttctcttcg gccgtcagcg ccgtgagcag cctgtgcgac
     3721 tggaagacga agccgacgcc ccggccgcgc catgcggcga gctcggccac cgaagccccc
     3781 gtgatgagga agtcgcccgc gcgcgccacg cctgcgcccg cctcttcgag cccgccgagg
     3841 acgtgcagca gcgtcgtctt ccccgccccc gaagcgccca cgaccgcgac ggcctcgccc
     3901 gcgccaaccg cgagcgacac cccgcgcaga acctccacgc gcccgcccga gggggagggg
     3961 aacgacttcc gcaaaccttc gaccacgagc cccatgtcct cggagatcac ccttcgtgcc
     4021 tgagcgcttc ggcgggccgg aggcgcgcgg cctgaagcgc cgggtagatg gtcgcgagca
     4081 ggctgacggc gagcgccgcg agcgcgggca gcagcacgtc tgcggcgcgc ggccgaagcg
     4141 ggacgacgct cacggaataa acgtccgggg gcagcctcac cagcccgaag tggtctgcgg
     4201 ccgcgcacgc cgcgaggccg agcacgacgc cgaaggcagc gcccgccgcg cctatcaacg
     4261 cgccctctat gacgaagacg gccatgacgc cgcgcgcccg cgcgccgata gcgcccaaca
     4321 cggctatgtc cgccctgcgc tcgacgacga cgagcgcgag cgtcgtcgtt atgttcaggg
     4381 ccgccaatat cattatcagc atgatgatga cggcgaccgt gcggcgctcc agctcgagcg
     4441 cggagaagag cgggcggtta gcctcgcgcc agtccacggc ctcccacccc ggcccgagca
     4501 gagagcgcac gcgcgccgcc acctcgttcg aggcgtaaat gtcgcgcgcc tctacggcga
     4561 cgaccgccga ctccgcgccc gcgcgcccgg cctcttcgag cgagaggtaa gcccacgccg
     4621 agtcgtactc gaacaggccc gtgcggaaga gccccgcgac gcgcacgcgc cgcgaccgcg
     4681 ccgcgaaccc ttcggcgccg ccgcgcggct cgcccgtcag g
//
LOCUS       DASPKR010000181         3769 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1834457, whole genome shotgun sequence.
ACCESSION   DASPKR010000181 DASPKR010000000
VERSION     DASPKR010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3769)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3769
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1834457"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..480)
                     /locus_tag="VD968_05010"
     CDS             complement(<1..480)
                     /locus_tag="VD968_05010"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE13784.1"
                     /translation="MDFSKRTSKRRAAFALLAACILLSPVSALAQRQRRADLLVVGGT
                     VVTMDGERRVIEDGAVAVRAGRIVAVGRRAEVERRHAGAEVIDARGRAVIPGLINGHT
                     HVPMSLFRGLADDLDLNEWLTKYIFPAEAKNVTEEFVRVGTQLGLAEMIRGGTTTYCD
                     "
     gene            complement(484..900)
                     /gene="cdd"
                     /locus_tag="VD968_05015"
     CDS             complement(484..900)
                     /gene="cdd"
                     /locus_tag="VD968_05015"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: protein motif:HMM:NF004064.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004126 - cytidine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0008655 - pyrimidine-containing compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HYE13785.1"
                     /translation="MGREEELIEAAKGARECALARYSNFHVGAALEDEEGNVYSGCNI
                     ESAAYELTMCAERVTIWKALSEGARRFRRIAVVADTERLTPPCGACRQLIWEFCGDIP
                     VVLANLRGDSETLQMKELLPRPFDAQFLEEAGAQSE"
     gene            complement(901..1575)
                     /gene="udk"
                     /locus_tag="VD968_05020"
     CDS             complement(901..1575)
                     /gene="udk"
                     /locus_tag="VD968_05020"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002638452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004849 - uridine kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HYE13786.1"
                     /translation="MIIGICGGTGSGKTTVANRILESVSKDEVVFLQQDSYYRNLDQM
                     PLDYRRKINFDHPDALDNELLIEHLQALKRGEPAELPIYDFRTHTRLPRTLHMEPRPI
                     IIIEGILIFADQRLLDEMDVKVYVDTPDDIRFIRRLRRDIAERGRTVESVIEQYLATV
                     RPMHMQFVEPSKRYADVIIPEGGHNLVSIQLLSGRIRERLEDARRRRAEAAAGVGVAL
                     KVEQGG"
     gene            complement(1575..2417)
                     /locus_tag="VD968_05025"
     CDS             complement(1575..2417)
                     /locus_tag="VD968_05025"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: protein motif:HMM:NF006054.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004731 - purine-nucleoside phosphorylase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HYE13787.1"
                     /translation="MTETPQHETAFEFAEHAARFLRSRGGDDARVALVLGSGLGAFAD
                     ELEDALAVPYSEIPGFARPTVEGHAGRLVFGRVEGVHVAAMQGRFHFYEGYSLEEVTF
                     PVRVLGRLGIKSLVLTNAAGGLNESYTPGSLVCISDHLNLLGASPLRGRNDERFGPRF
                     PDMSEVYDREYQEAAVGAARALGFEMPRGVYAALSGPAYETPAEIRMLRLLGADAVGM
                     STVPEAMVARHMGLRVLGLSCITNMAAGVVDRPINHEEVIETGERVRETFAALLRLVI
                     PKLQ"
     gene            complement(2414..>3769)
                     /locus_tag="VD968_05030"
     CDS             complement(2414..>3769)
                     /locus_tag="VD968_05030"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/ABC1/UbiB kinase family protein"
                     /protein_id="HYE13788.1"
                     /translation="VEKIVATELGVRVSKAFSEFESAPMAAASLGQVHRARMRDGRPV
                     VVKVQRPDIREQMTKDLDVLTDIAAFLDGHTEAGRRYEFGGVLEELRKSLLRELDYRQ
                     EARNLSTFAGNLRDFDRLVVPRHIEDYTTSRVLTMDYIRGRKITTLSPLAMLELDGFL
                     LAEHLFQAYLQQILVDGFFHADPHPGNVFLTDDKRIALIDLGMVGRVSPRFQEGLIQL
                     LLAISEGRGEEAAGLAVRMGEPKEGFDEQSFTHQVSELVLQNRDSQLENLNSGRVVLR
                     ITQISGETNFRLPPEFTMIAKTLLNLDQVVHTLDPKFDPNFAIREYADTIVQRRLSKS
                     LSAGNIYATVLELKDFLEKFPARVNEFLETVTKRGLKFEVDAIDEVRLIEGIQKVANR
                     ITLGLLLAALIVGAALMMRVETNFKIFGYPAIAIFFFLIAAAGALVLAFNILFKDEKK
                     K"
BASE COUNT          590 a         1207 c         1302 g          670 t
ORIGIN      
        1 gtcgcagtag gtcgtagtcc cgccgcgtat catctcggcc aggccgagct gcgtgcccac
       61 gcgcacgaac tcttcggtga cgttcttggc ctcggccggg aagatgtact tggtgagcca
      121 ctcgttgagg tcgaggtcgt ccgcgaggcc gcggaagagc gacatgggga cgtgcgtgtg
      181 gccgtttata aggccgggga tgacggcgcg cccgcgagcg tcaatcacct ccgcgcccgc
      241 gtgcctgcgc tcgacctcgg cgcggcgccc caccgcgacg atgcggcccg cgcgcaccgc
      301 cacggcgccg tcctcgatca cgcggcgctc gccgtccatc gtcacgaccg tgccgccgac
      361 gacgagcagg tcggcgcggc gctgcctctg cgcgagcgcc gaaaccggcg aaaggaggat
      421 gcaggctgcc agcagcgcaa acgccgcccg gcgcttactc gttctttttg aaaagtccat
      481 ccgtcactcg ctctgcgcgc cggcctcttc gaggaactgg gcgtcgaagg ggcgcggcag
      541 cagctctttc atctgtaggg tctcggagtc gcctcgaagg ttggcgagca cgacgggtat
      601 gtcgccgcag aactcccaga tgagctgtcg gcaggcgccg cagggcggcg tcaggcgctc
      661 ggtgtcggcg acgacggcga tgcgcctgaa gcggcgcgcg ccctcggaga gcgccttcca
      721 gatggtgacg cgctcggcgc acatcgtcag ctcgtaggcg gcgctctcga tgttgcagcc
      781 cgaatagacg ttgccttcct cgtcctcgag cgcggcgccc acgtgaaagt tcgagtagcg
      841 cgcgagcgcg cactcgcgcg cgcccttcgc ggcctcaatc agctcctctt cccttcccac
      901 tcagcctcct tgttctacct tgagcgcgac gcccacgccc gcggcggcct cggcgcggcg
      961 gcggcgcgcg tcctccaggc gctcgcgtat gcggcccgag aggagctgta tgctcacgag
     1021 gttgtggccc ccctcgggga ttatcacgtc ggcgtagcgc ttcgacggct cgacgaactg
     1081 catgtgcatg ggccgcacgg ttgcgaggta ctgctcgatg acggactcga cggtgcggcc
     1141 gcgctcggct atgtcgcggc gcaggcggcg gatgaaacgt atgtcgtcgg gcgtgtccac
     1201 gtaaaccttc acgtccatct cgtcgagcag gcgctggtcg gcgaagatga gtatgccctc
     1261 gatgatgatg atggggcgcg gctccatgtg gagcgtccgg ggcaggcgcg tgtgcgtgcg
     1321 gaagtcgtag atgggtaact ccgccggctc gccgcgcttg agggcttgca ggtgctcgat
     1381 gagaagctcg ttgtcgagcg cgtccgggtg gtcgaagttt atcttgcggc ggtagtcgag
     1441 cggcatctgg tcaaggttgc ggtagtaaga gtcctgctga aggaagacga cctcgtcctt
     1501 gctcaccgat tccagtatcc ggttagccac ggtcgtcttg cccgacccgg tcccgccgca
     1561 gatgccgatt atcattactg tagtttcggt atcacaagtc tgagcagcgc ggcgaaggtc
     1621 tcgcggacgc gctcgccggt ctcgatgacc tcctcgtggt tgatgggccg gtcaactacg
     1681 ccggccgcca tgttcgtgat gcaggagagc ccaagcacgc gcaggcccat gtggcgcgcg
     1741 accattgcct ccggcacggt gctcatgccg acggcgtctg cgcccaggag ccgcagcatg
     1801 cgaatctcgg ccggcgtctc gtaggcgggc ccagagagcg ccgcatagac gccgcgcggc
     1861 atctcgaaac cgagcgcgcg ggccgcgccg acggccgcct cctggtactc gcggtcgtaa
     1921 acttcggaca tgtccgggaa gcgcgggccg aagcgctcgt cgttgcggcc gcgcaggggg
     1981 ctcgcgccca ggaggttcag gtggtcgctt atgcagacga gcgagcccgg cgtgtaagac
     2041 tcgttcagcc ccccggcggc gttcgtcagc acgagcgact ttatcccgag ccggccgagc
     2101 acgcgcacag ggaacgtcac ctcttcgagc gagtagccct cgtagaagtg gaagcggccc
     2161 tgcatggcgg cgacgtgcac gccctcgacg cggccgaaga ctagccggcc ggcgtggccc
     2221 tcgaccgtgg ggcgcgcgaa gccgggaatc tccgagtagg ggacggcgag ggcgtcttcg
     2281 agctcgtcgg cgaaggcgcc cagcccgctc ccgagcacga gggcgacgcg agcgtcgtcg
     2341 ccgccgcgcg agcgcaggaa acgggctgcg tgctcggcga actcgaaggc ggtctcgtgc
     2401 tgcggcgtct ccgtcatttc ttcttctcgt ctttgaacag gatgttaaag gctaacacga
     2461 gcgcgcccgc ggcggctatc aggaagaaga agattgcgat ggcggggtag ccgaaaatct
     2521 tgaagttcgt ctcgaccctc atcatcagcg ccgccccgac gatgagcgcc gcaagcagaa
     2581 ggcccagcgt gatgcggttc gcgaccttct gtatgccctc gatgaggcga acctcgtcta
     2641 tggcgtccac ctcgaacttg aggccgcgct tcgtgacggt ctctaagaac tcgttgacgc
     2701 gcgccgggaa tttttccaga aaatccttaa gctccaggac tgtcgcgtag atgttcccgg
     2761 ccgagaggct cttgctcagg cgccgctgga ctatggtgtc ggcgtactcg cgtatggcga
     2821 agttggggtc gaacttcggg tcgagcgtgt gcacgacctg gtcgaggttc agcagcgtct
     2881 tcgcgatcat tgtgaactcg ggcgggaggc ggaagttggt ctcgcccgaa atctgcgtga
     2941 tgcgtaggac gacccggccg gaattgaggt tctccagctg cgagtcgcgg ttctggagga
     3001 ctagctccga gacctggtgc gtgaatgatt gctcgtcgaa gccctccttc ggctcgccca
     3061 tgcggacggc cagcccggcc gcctcctcgc cgcgcccctc gctgatggcg agcaatagct
     3121 gtatgaggcc ctcctggaag cgcgggctga cgcgcccgac catgccgagg tcaatgaggg
     3181 caatgcgttt gtcgtccgtg aggaagacgt tgccggggtg cgggtctgcg tggaagaagc
     3241 cgtcaacgag tatctgctgc aggtaagcct ggaagaggtg ctcggcgagc aggaagccgt
     3301 cgagctcgag catggctagc ggcgagagcg tcgttatctt ccgccctcgt atgtagtcca
     3361 tcgtgagcac gcgcgaggtc gtgtagtcct cgatgtgtcg ggggacgacg aggcggtcga
     3421 agtcgcggag gttcccggcg aaggtcgaga ggttgcgcgc ctcctgcctg tagtcgagct
     3481 cgcgcagcag gctcttgcgg agctcttcga gcacgccgcc gaactcgtac cggcgcccgg
     3541 cctcggtgtg gccgtcgagg aacgcggcga tgtccgtgag cacgtcgagg tctttcgtca
     3601 tctgctcgcg tatgtcgggg cgctgcacct tgacgacgac ggggcggccg tcccgcatcc
     3661 tcgcgcggtg aacctgcccg agcgaggccg cggccatcgg cgccgactcg aactccgaga
     3721 atgccttcga cacgcgcacg cccagctccg tcgcgactat cttctcgac
//
LOCUS       DASPKR010000182         9537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1317539, whole genome shotgun sequence.
ACCESSION   DASPKR010000182 DASPKR010000000
VERSION     DASPKR010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9537)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9537
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1317539"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2405
                     /locus_tag="VD968_05035"
     CDS             <1..2405
                     /locus_tag="VD968_05035"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE13789.1"
                     /translation="VARFEREAHAVSHLNHPNVVTVYEVGESDGLRFIVTEYVEGETL
                     RELLARGPLPTGRALDIAVQNASALSAADEAGVVHRDVKPENVMLRPDGYVKVLDFGL
                     AKLVERGGTRGSDGEAETVEMAHTNPGAVMGTTWYMSPEQARAGAVDERTDVWSLGCV
                     LYEMLAGVPPFVGATPSHVIVSLLEKEPAPLVGQVAGVTPELEAVVLKALRKNRDARY
                     RTMGEMLEDLVSLKAAYGVAGHTARLTSQAASGSRRETSGGAPPPLARDTAHAGDAQP
                     TAPDGPHARNRWTESFRIFDTSAPGLRDKNRRLLVGAALASVLIVGAYVLYSRLTATR
                     GIKAVAVLPFTNVGGSPDTEWLSDGITESLINSLSPAPGLKVMSRNSVFRYKGRGVEP
                     VRAARELGVGAVLTGEVAQRGDDLVVTAELIDARDNTQLWGERYNRKLSDLVSVQEEI
                     AREIAAHLRSRLQGAAAEPKSHTRDSEAYQDYLRGRYFWNKRTEEGFRRAVEFFDRAI
                     GRDPRYALAYAGLADTYALMSDYSIVQPREAMPKARAAAERALELDDSLAEAHTSRAF
                     VRMAYDWQWREAERDFQRAIELSPNYATAHQWYASYLLQVGRFGEALSEIRRAQELDP
                     LAPIIGANAGLYLYYARRYDEAAAQLRKTLAVDDRFGVAHLYMGYVMLQQPNSAEAAI
                     AEFIKARELMGEDPETLAALGHAYAVAGRRADALKSLEALRARSTRGYVSPYFLAIVY
                     AGLGDTARAFENLERSYQDRHPGMILLKSDPRFDPLRKDARLSDLIRRIEQQPAEPEE
                     IR"
     gene            complement(2433..3449)
                     /locus_tag="VD968_05040"
     CDS             complement(2433..3449)
                     /locus_tag="VD968_05040"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HYE13790.1"
                     /translation="MEDEAAREPDTDALAFEVSGEEAGARLDSFLASRLAGVSRTVIK
                     RAADDGDVLVDGRAAKPSHKLRAGERVEVELPPPPSHDLTPEDIPLEIVHEDEEVVVV
                     NKPAGMVVHPAAGAHSGTLANALAFHFDQLSHSAGAMRPGIVHRLDRGTSGLIVVAKT
                     AHAHENLTEQFRARTVFKSYAALAHGLVKDDRGKIEEPIGRDPRNRTRMAVVRGGRAA
                     LTLWRVRARLRRFTLLDVEIKTGRTHQIRVHLAWLKHPVVGDETYGMGRDQNIPDGRL
                     RARVLALGRQFLHAQRLGFHHPGTGEWMSFTAPPPPELTGFLESLEGASASHFAGPGE
                     QISG"
     gene            complement(3455..4264)
                     /gene="lgt"
                     /locus_tag="VD968_05045"
     CDS             complement(3455..4264)
                     /gene="lgt"
                     /locus_tag="VD968_05045"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: protein motif:HMM:TIGR00544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HYE13791.1"
                     /translation="MLPELFRIGSFPVNTYGVLLALAFLAALFVSSRLAERDGLPRER
                     VFDMGLWMLLGGLLGSKILLMFAEPEYGASIWNLISIDFLRSGGVWYGGFLGGLAAGL
                     LLIRRYRLPFWKATDAFAAGVALGQSIGRLGCFAAGCCWGEECHLPWAVTFPEEARQV
                     TGVPAGVPLHPTQLYESFAMLLLFLFLVRLHRRKPFDGAVIAAYAVLYGAIRFAIEFV
                     RADPRGDIAHLTTLTGLSTSQLISAAVFTGGAVALVLLRRRSRAGAGASRA"
     gene            complement(4382..4924)
                     /gene="lspA"
                     /locus_tag="VD968_05050"
     CDS             complement(4382..4924)
                     /gene="lspA"
                     /locus_tag="VD968_05050"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: protein motif:HMM:TIGR00077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HYE13792.1"
                     /translation="MSEQARGIAWRAAYLFAAAGVYLADQATKAWAVRRLRLGGTVSV
                     IDGFLMFGYAENPGIAFGQLQEGGEFGRWMLAALAALAVVGVLIYFFRTKRTDDRVLG
                     ALALLLAGVAGNLTDRVRLGHVVDFIELHLGSFQWPTFNVADAAICVGAGLLALDLIL
                     EGRAERRAREGSGPGVSEKA"
     gene            complement(4921..7977)
                     /gene="ileS"
                     /locus_tag="VD968_05055"
     CDS             complement(4921..7977)
                     /gene="ileS"
                     /locus_tag="VD968_05055"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HYE13793.1"
                     /translation="MSTETPLDLKSTVNLPKTGFAQKANLGQSEPARLKKWDEAGLYA
                     RLRRERSGRERFILHDGPPYANADIHLGTALNKILKDIVVKSRSMMGYDAPYVPGYDC
                     HGLPIEQHVERALEKKGRKRADLSQVSFRRACREHAAGALKRQTADFQRLGILGLWED
                     PYLTMSNHYEAETARLFGRFVERGYVYKGARPVYWCVHDQTALAEAEVEYREHTSPSV
                     YVKFPLSEGNLEAKAFKREILGDQDDPRKVFFLIWTTTPWTLPSNLGIAVNPNFEYAA
                     VQHNGEVFVVASDLVATLAEKLGLGADGRPAGEADAWPAVPSPRVLARFPGSRLDRLE
                     ARHAWLDRPSLLMVGEHVTLGGEADAETELDVSEARDKKVTGKAGTGLVHTAPGHGHD
                     DFVIGKSYGLEIYCPVDNAGRFTSEVEHFAGQGVFEANPRIVEFMRGRGLLVFDEPYG
                     HRYPHCWRCKNPVIFRATPQWFVSLDTPAGDGRDFERDDDGRDVSNFTDDVTNEPTSL
                     RGAALREIEGVEWVPAWGEERMRNMLKGRPDWCVSRQRVWGVPIPAFYCSGCGETVAD
                     ASVINHVADVFERESADAWYAREARELLPEGFRCPKCGVAEFTKETDILDVWFDSGSS
                     SVAVLERYEGLRWPADVYLEGGDQYRGWFNSSLMVALAAHDRAPYRAVVTHGWVINVQ
                     GQKMSKSEGTGISPNEVVKASGAEILRLWVASSDFQEDVRCSDEILQRASDAYRKMRN
                     TARFALGNLDGFDPRRDSVPLGEMFEIDRWALSELDAVIERVVAAYKAYEFHAAYHAL
                     YNFCTVTLSARYFDIIKDRLYTAAPKSHARRSAQTALNYIADALARLLAPVLAFTADE
                     IWENLPEVKAGGDSVAPSVHLVEFPLVGRERDTGLSQRWSRLFEVRDTVLRALEEARI
                     AKRIGSSLEAHVLLSADRKTNALLEQYREELRYLFIVSQVSLTLSGEEEAREVSVAVE
                     RADGQKCERCWNYSVRVGEFARYPTVCERCVEALAEMEAEGGAAES"
     gene            complement(8127..8699)
                     /locus_tag="VD968_05060"
     CDS             complement(8127..8699)
                     /locus_tag="VD968_05060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13794.1"
                     /translation="MPFPALQMSANDPAFWVLVIVAVSFVVIAVAMVVVAVVISRVAR
                     TVTNVERRVEPLMERMGGLADQVRAIAAQGRDVAEQVTVMSGHLSTATMHFSESMGLI
                     KEEVRQLKEIVGVSAETARDKVEMISRSIDQTHEQLMVTTGYITSKIINPAREIAAIM
                     AGVRRGLEVLVAPAPKQIDQTYAEEEMFIG"
     gene            complement(8809..9216)
                     /locus_tag="VD968_05065"
     CDS             complement(8809..9216)
                     /locus_tag="VD968_05065"
                     /inference="COORDINATES: protein motif:HMM:NF024143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HYE13795.1"
                     /translation="MSEKLQRRRGGGDDTDFGTQLACFALGATVGAVVALLLAPKSGR
                     ELREDIADATRKGVDRARETGSQLGAKAGEYYEAAAGRAGELAASARSAAARGGEQVT
                     AAIEAGKQAYRDEKRRTENSALVGQPAGDGGQG"
     gene            complement(9338..>9537)
                     /locus_tag="VD968_05070"
     CDS             complement(9338..>9537)
                     /locus_tag="VD968_05070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYE13796.1"
                     /translation="GRNVVLEISVPATIDEIERRAIEATLDYTGGDKTRAARALGIGR
                     KTLYRKLRQYEGEAGGDADAE"
BASE COUNT         1510 a         3299 c         3236 g         1492 t
ORIGIN      
        1 gcgtcgcgcg cttcgagcgc gaggcgcacg ccgtctcaca cctcaaccac ccgaacgtcg
       61 tcacggtcta cgaggtcggc gaatcggacg gcctgcgctt catcgtcacc gaatacgtcg
      121 agggcgagac gctgcgcgaa ctactcgcgc gcggcccgct ccccacgggg cgcgcgctcg
      181 acatcgccgt ccagaacgcc tcagcgctct cggccgcgga tgaggcgggc gtcgtccacc
      241 gcgacgtgaa gcccgagaac gtgatgctgc ggcccgacgg ctacgtcaaa gtcctcgact
      301 tcggcctcgc caagctcgtc gagcggggag gcacgcgagg ctccgacggc gaggccgaga
      361 ccgtcgagat ggcccacacg aaccccggcg ccgtgatggg cacgacctgg tacatgtcgc
      421 ccgagcaggc gcgcgccggg gcggttgacg agaggactga cgtttggagc ttaggctgtg
      481 tcctctacga gatgctcgcg ggcgtgcctc ccttcgtcgg cgcgacgccg agccacgtaa
      541 tagtctcgct gctggagaag gagccggcgc ccctcgtcgg gcaagtcgct ggcgttacgc
      601 cggagctcga ggccgtcgtc ctgaaggccc tgcgtaaaaa ccgcgacgcg cgctaccgga
      661 cgatgggcga gatgctcgaa gacctggtta gcctcaaggc cgcttacggc gtcgccggcc
      721 acacggcgcg gctcacgtcg caggccgcgt cgggctcgcg gcgtgagacc tcgggcgggg
      781 cgcccccgcc cctcgcccgc gacacggcgc acgcaggcga cgcgcaaccc acagcgcccg
      841 acggcccgca cgcgcgcaac cgctggaccg agagcttccg catattcgac accagcgcgc
      901 cgggactgcg cgacaagaac aggcggctgc tcgtaggcgc cgctctcgcc tccgtcctca
      961 tcgtcggcgc ctacgtcctc tactcgcgcc tgacggcgac gcgcggcatc aaagccgtcg
     1021 cagtcctccc cttcacgaac gtcggcggca gccccgacac cgaatggctc tccgacggca
     1081 tcaccgaaag tctaatcaac agcctctcgc ccgcgccggg cctgaaggtg atgtcgcgca
     1141 actcggtctt ccgctacaag gggcgcgggg tggagcccgt gagggccgcg cgcgagctcg
     1201 gcgtgggcgc cgtgctcacg ggcgaggtgg cgcagcgcgg cgacgacctc gtggtgacgg
     1261 cagagctgat tgacgcgcgc gacaacacgc agctctgggg cgagcgctat aaccgaaagc
     1321 tctccgacct cgtttccgtt caggaggaga tagccaggga gatcgccgcg cacctgcgct
     1381 cgcggctgca aggcgcggcg gccgagccga agagccacac gcgcgacagc gaggcatacc
     1441 aggactacct gcgcggccgc tacttctgga acaagaggac ggaggagggc ttccgcaggg
     1501 ccgtcgagtt cttcgaccgc gccatcggcc gcgacccgcg ctacgcgctc gcctacgccg
     1561 ggctcgccga cacctacgcc ctgatgagcg actacagcat cgtgcagccg cgcgaggcga
     1621 tgccgaaggc gagggccgcc gccgagcggg cgctcgaact ggacgactcg ctcgccgagg
     1681 cccacacctc gcgcgccttc gtccgaatgg cctacgactg gcagtggcgc gaggccgagc
     1741 gcgacttcca gcgcgccata gagcttagcc ccaactacgc gaccgcgcac cagtggtacg
     1801 cctcatacct tttgcaggtc ggacgcttcg gcgaggccct ctccgagata cggcgcgcgc
     1861 aggagctaga ccccctcgcg cccatcatcg gcgccaacgc cgggctctac ctctactacg
     1921 cgcgccgcta cgacgaggcc gcggcgcaac tccgaaagac tctggcggtt gacgaccgct
     1981 tcggcgtcgc gcacctctac atgggctacg tgatgctgca acagcctaac agcgccgagg
     2041 cggcgattgc ggagttcata aaggcgcgcg agctgatggg cgaagacccc gagacactcg
     2101 cggcgctcgg ccacgcctac gccgtggcgg gccgtcgcgc cgacgccttg aagtcgctcg
     2161 aagccctgcg tgcgcgctcc acgcgcggct acgtctcgcc ctacttcctg gcgatcgtct
     2221 atgcgggcct gggcgacacg gcccgcgcct tcgagaacct ggagcgctcc taccaggatc
     2281 gccacccagg catgatactg ctcaagtccg acccgcgctt cgacccgctg cgcaaggacg
     2341 cgcgcctctc cgacctcata cgccgcatcg agcagcagcc cgccgagccc gaagaaatac
     2401 gctgaagcgg ggcggcgtgc gccgcccgat agttaaccgg aaatctgctc gccggggccg
     2461 gcgaagtggc tcgcgctcgc gccttcgagg ctttcgagaa accctgtcag ctcgggcggg
     2521 ggcggcgccg tgaagctcat ccactcgccg gtgccagggt ggtggaagcc gagccgctgc
     2581 gcgtgcagga actggcggcc gagcgcgagc acgcgcgccc gcagccggcc gtcggggatg
     2641 ttctggtcgc gccccatgcc ataagtttcg tcgcccacga cggggtgctt gagccacgcc
     2701 aggtggacgc gaatctggtg cgtgcggccc gtctttatct caacgtcgag gagcgtgaag
     2761 cggcgcagtc gcgcgcgcac gcgccacagg gtgagggccg cgcgcccgcc gcgcactacc
     2821 gccatgcgcg tgcggttacg cgggtcgcgc ccgatcggct cctcgatctt gccccggtcg
     2881 tctttgacga gcccgtgcgc gagcgcggcg taggacttga acacggtgcg cgcgcggaac
     2941 tgctcggtca ggttttcgtg cgcgtgcgcg gtcttggcga cgacgatgag gccggaagtc
     3001 ccacggtcga gccggtggac gatgcccggc cgcatagccc cggcgctgtg cgaaagttgg
     3061 tcgaagtgaa aggcgagcgc gttagccagg gtgccggaat gggctccggc ggccgggtgg
     3121 acgaccatcc ccgcgggctt gttgacgacg acgacttctt cgtcctcgtg gactatctct
     3181 agcgggatgt cttcgggcgt gaggtcgtgc gaaggcgggg gcggcaactc cacctcaacg
     3241 cgctcgccgg ccctgagctt gtgcgaaggt ttggcggcgc ggccgtcaac cagaacgtcg
     3301 ccgtcgtcgg ccgcgcgctt gatgacggtg cggctcacgc ccgcaagcct tgacgcgagg
     3361 aacgagtcga gccgcgcgcc cgcctcctcg cccgagacct caaaggcgag cgcatccgta
     3421 tccggctctc tcgccgcttc gtcttccatg actttcaggc gcgcgacgcg cccgccccgg
     3481 ctcgcgagcg gcggcgcagg agcacgagcg cgacggcgcc tcccgtgaac acggccgcgc
     3541 ttattagctg agaggtggag aggcccgtca gcgtcgtcag gtgcgcgatg tcgccgcgcg
     3601 gatccgcgcg gacgaactcg attgcgaaac ggatcgcgcc gtagagcacg gcgtaggcgg
     3661 ctatcacggc gccgtcgaag ggcttcctgc ggtgcagccg cacgaggaag aggaagagta
     3721 ggagcatcgc gaaggattcg tagagctgcg tggggtgcag cgggactccg gccgggacgc
     3781 ccgtcacctg ccgcgcctcc tcggggaacg tgacggccca ggggaggtgg cactcctcgc
     3841 cccagcagca gccggcggcg aagcacccga gccgcccgat tgactgcccg agcgccacgc
     3901 ccgccgcgaa cgcatctgtg gccttccaga agggcaggcg gtagcggcga atcagcagga
     3961 gcccggccgc caagccgccg aggaagccgc cgtaccagac cccgcccgag cgcaggaagt
     4021 ctatggagat gaggttccag atgctcgcgc cgtactcggg ctccgcgaac atgagcagga
     4081 ttttcgagcc gagcagcccg cccagaagca tccacagccc catatcgaag acgcgctcgc
     4141 gcgggagccc gtcgcgctcc gcgaggcgcg acgacacgaa gagcgccgct agaaaggcga
     4201 gcgcaagcag cacgccgtag gtgttcacgg ggaagctacc gatgcggaac agttcaggaa
     4261 gcatctcggt tcgggcgagg ggtgacgggc gacgagaagc ggccagccgg ccgggccgac
     4321 gcctttgacg acggcggcgc gggcagaggc gccggggcgg cgaggggcat ctcttccctg
     4381 ttcatgcctt ctccgagact cccgggcctg agccctcgcg ggcgcgcctc tcggcgcggc
     4441 cttcgaggat gaggtcgagc gcgagcaggc cggcgccgac gcagatggcg gcgtcggcga
     4501 cgttgaaggt cggccactgg aacgacccca agtgcagctc gatgaagtca acgacgtggc
     4561 cgagcctcac gcggtctgtc aggttccccg cgacgcccgc gagcagaagg gcgagcgcgc
     4621 cgagcacgcg gtcgtccgtc cgcttggtgc ggaagaagta gatgagcacg ccgacgacgg
     4681 cgagcgccgc gagagccgcc aacatccagc ggccgaactc gccgccctcc tgcaactgcc
     4741 cgaaggctat gccggggttc tccgcgtagc cgaacatgag gaagccgtca atgacgctca
     4801 ccgtcccgcc gaggcgcagg cggcgcactg cccaagcctt cgtcgcctga tcggccagat
     4861 agacgcccgc cgcggcgaac aggtacgccg cgcgccaggc gatgccccgc gcctgctcgc
     4921 tcacgactcg gccgcccccc cttcggcctc catctcggcc agcgcctcga cgcagcgctc
     4981 gcagacggtc gggtatcgcg cgaactcgcc cacgcgcacg gagtagttcc agcagcgctc
     5041 gcacttctgc ccgtcggcgc gctcgaccgc gacggagact tcgcgcgcct cctcctcgcc
     5101 cgagagcgta agagagacct gcgagacgat gaagaggtat cgaagctctt cccggtactg
     5161 ttccaggagc gcgttggtct tcctgtcggc gctgagaagg acgtgcgcct cgaggctgct
     5221 cccgatgcgc ttggctatgc gcgcctcttc caaagcgcgc aagaccgtgt cgcgcacctc
     5281 gaagaggcgc gaccagcgct gcgagagccc cgtgtcgcgc tcgcgaccca cgagcgggaa
     5341 ctcgaccagg tggacggacg gcgccaccga gtcgcccccg gctttgacct ccggcaggtt
     5401 ctcccagatt tcgtcggctg tgaaggcgag cacaggcgcc aggaggcgcg cgagcgcgtc
     5461 ggcgatgtag ttgagcgcgg tctgagccga gcggcgcgcg tgcgacttcg gcgcggccgt
     5521 gtagagcctg tcctttatga tgtcgaagta gcgcgccgac agcgtcaccg tgcagaagtt
     5581 gtagagcgcg tggtaggcgg cgtggaactc gtatgccttg taggccgcga cgacgcgctc
     5641 tatcacggcg tcgagctccg agagcgccca gcggtctatc tcgaacatct ccccgagcgg
     5701 cacggagtcg cgccgcgggt cgaagccgtc taggttgccg agcgcgaagc gcgcggtgtt
     5761 ccgcatcttg cggtaggcgt ccgaggcgcg ctgcaatatc tcgtccgagc agcgcacgtc
     5821 ctcctgaaaa tccgaagagg cgacccagag gcgcagtatc tccgcgcccg aagccttcac
     5881 gacctcgttc ggcgagatgc ccgtgccttc ggacttgctc atcttctgcc cctgcacgtt
     5941 tatcacccag ccgtgcgtga cgacggcgcg gtacggcgcg cggtcgtgcg cggcgagcgc
     6001 gaccatcagg gaagagttga accagccgcg gtactggtcg ccgccttcga ggtaaacgtc
     6061 ggcgggccag cgcaggccct cgtaacgttc gagcacggcg acagaggacg agccgctgtc
     6121 gaaccaaacg tcgagtatgt ccgtctcctt cgtgaactcc gcgacgccgc acttcgggca
     6181 gcggaagccc tcgggcagaa gctcccgtgc ctcgcgcgcg taccaggcgt cggccgactc
     6241 gcgctcgaat acgtccgcga cgtggttgat gacggaggcg tctgctacgg tctcgccgca
     6301 gcccgagcag tagaaggcgg gtatggggac gccccacacc ctctggcgcg acacgcacca
     6361 gtccggtcgc cccttgagca tgttgcgcat gcgctcctca ccccacgccg gcacccactc
     6421 gacgccctct atctcgcgca gcgccgcccc gcgtaaggag gtgggctcgt ttgtcacgtc
     6481 gtccgtgaag ttcgacacgt cgcggccgtc gtcgtcgcgc tcgaagtcgc gcccgtcgcc
     6541 cgcgggcgtg tcgagcgaga cgaaccactg cggcgtcgcg cggaagatga cggggttctt
     6601 gcagcgccag cagtgcgggt agcggtgccc gtagggctcg tcgaagacga gcaggccgcg
     6661 cccgcgcatg aactcgacta tgcgcgggtt ggcctcgaag acgccctgcc cggcgaagtg
     6721 ctcgacctcc gaagtgaatc tgccggcgtt gtcaacgggg cagtagattt ctaagccgta
     6781 agacttgcct atcacgaagt cgtcgtggcc gtggcccggc gccgtgtgta ccaggcccgt
     6841 gccggccttg cccgtcactt tcttgtcgcg cgcctcgctc acatccaact ccgtctcggc
     6901 gtcggcctcg ccgccgagcg tgacgtgctc gcccaccatc aaaagcgacg gccggtctag
     6961 ccacgcgtgg cgggcttcga ggcggtcgag gcgcgagccg gggaagcgcg cgagcacgcg
     7021 gggcgagggg acggcgggcc acgcatcggc ctccccggcg ggccggccgt cggcgccaag
     7081 gccgagcttt tcggcgaggg tcgccacgag gtcgctcgcg acgacgaaga cctcgccgtt
     7141 gtgctggacg gccgcgtact cgaagttggg gttgacggct atgccgaggt tcgatgggag
     7201 cgtccagggc gtcgtcgtcc agatgaggaa gaagaccttc cgggggtcgt cctggtcgcc
     7261 gagtatctcg cgcttgaagg ctttggcctc aaggttcccc tccgagagcg ggaacttgac
     7321 atagactgag gggctcgtgt gctcgcggta ctcgacctcg gcctccgcga gcgccgtctg
     7381 gtcgtggacg caccaataga cggggcgcgc gcccttatag acgtagccgc gctcgacgaa
     7441 gcggccgaac agtcgggccg tctccgcctc gtagtggttc gacatcgtca ggtacgggtc
     7501 ttcccacagg ccgagtatgc cgagccgctg gaagtcggcg gtctgccgct tcagggcgcc
     7561 cgcggcgtgc tcgcggcagg cgcggcggaa gctgacctgc gagaggtctg cgcgcttcct
     7621 gcccttcttc tccagcgcgc gctcgacgtg ctgctcgatg ggcaggccgt ggcagtcgta
     7681 gccggggacg tagggcgcgt cgtagcccat catcgagcgc gacttgacga cgatgtcctt
     7741 gagaatcttg ttgagcgcgg tgccgaggtg tatgtcggcg ttggcgtagg gcggcccgtc
     7801 gtggaggatg aagcgctcgc gccccgagcg ctcgcgccgc agccgcgcgt agagcccggc
     7861 ctcgtcccac ttcttcaggc gcgcaggctc ggactggccc aggttcgcct tctgcgcgaa
     7921 ccccgtcttc ggcaggttaa ccgtgctctt caggtcgagc ggtgtctcgg ttgacatctt
     7981 cttcgccttc cttcggcctc gtgaattagt gatactaacc cacgggcagt tcaattcaaa
     8041 atttcaaaaa aatcgcccga gccggctctc tcgctcggag aggatggctc gggcgctgcg
     8101 gcgcctgtga ttaggagaca gggctctcag ccgatgaaca tctcctcctc cgcgtatgtc
     8161 tggtcaatct gttttggtgc gggggccacg agcacttcca gaccgcgcct gacccccgcc
     8221 ataatcgccg cgatctcgcg ggcggggttg attatcttcg aggttatgta gcccgtcgta
     8281 accatgagtt gctcgtgcgt ctggtctatc gagcggctta tcatctcgac cttgtcgcgc
     8341 gccgtctcgg ccgagactcc tactatttcc ttgagctgcc tgacctcctc cttgatgagg
     8401 cccattgact ccgagaagtg catcgtggcc gtcgagaggt ggcccgacat cacggtcacc
     8461 tgctcggcca cgtctcgccc ctgcgcggcg attgcgcgca cctggtcggc tagaccgccc
     8521 atgcgctcca tgaggggctc gaccctgcgc tcgacgttcg tcacggtgcg cgcgacgcgg
     8581 cttatgacga ccgcgacgac gaccatcgcg acggcaatga ctacgaacga cacggccacg
     8641 atgacaagca cccagaaggc cgggtcgttc gcgctcatct gtagggccgg gaagggcata
     8701 aacaagtagt cggtagccgg tggaaaaacc ttcgttattg aatcgttagc ttgtcagcgt
     8761 cagcgccccg gcgcggagcc tactgactgc tgattattaa ctactgtttc atccttgccc
     8821 gccgtcgccc gcgggctgcc cgacgagggc ggagttttcg gtgcggcgct tctcgtcgcg
     8881 gtatgcctgc ttgccggcct ctatggcggc ggtgacctgc tcgccgccgc gcgcggcggc
     8941 gctgcgggcc gaggcggcaa gctcgcccgc gcgcccggcg gcggcctcgt aatactcgcc
     9001 ggccttcgcg ccgagctgcg agccggtctc ccgcgcgcgg tcaacgcctt tgcgagtggc
     9061 gtcggcgatg tcctcgcgca gctccctgcc ggacttgggc gcgagcagca gcgctacgac
     9121 ggcgcctaca gtcgcgccga gggcgaagca ggcgagctgc gtcccgaagt ccgtgtcgtc
     9181 gcccccgccg cgcctgcgct gtagtttctc tgacatggcc tctcctcaga agcggggctg
     9241 gcatcgcgcc cgccgaaagc cgcccggtaa cggcactttt aaaccttctc gcaatataac
     9301 aaaagcgcgc gaaccggcgc aataaatcgg ccgccgctca ctcggcgtcg gcgtcgccgc
     9361 cggcctcgcc ttcgtactgc cgcagcttac ggtagagcgt cttgcgcccg atcccgaggg
     9421 cgcgggcggc gcgcgtcttg tcgccgcccg tgtagtcgag cgtggcctct attgcgcggc
     9481 gctctatctc gtcaatcgtg gccgggacgc ttatctcgag cactacgttg cgcccct
//
LOCUS       DASPKR010000183         2539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_669822, whole genome shotgun sequence.
ACCESSION   DASPKR010000183 DASPKR010000000
VERSION     DASPKR010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_669822"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..752)
                     /locus_tag="VD968_05075"
     CDS             complement(<1..752)
                     /locus_tag="VD968_05075"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE13797.1"
                     /translation="MKRRARKVWAMPAALGLLLAALAGAGVARAQDEPAFAEREALAL
                     SKPLSLRWAFETNDTVNLTPALGDGAVYLPLVGGALVSLRTGDGRLVWKTDMGGAISA
                     APAADARGVYVASESVLPGGEAAAAPRVAGALRALGSQSGVTLWMRTLTAPLRGALVA
                     DERALYGGAEDGRLYALKKETGELLWVSQFPAPFQSRPVLRDGRLYVGGEDGTLHAVD
                     RATGRTLWRYRTRKALRAPVALDGDMVFAGST"
     gene            1200..2159
                     /locus_tag="VD968_05080"
     CDS             1200..2159
                     /locus_tag="VD968_05080"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial transcriptional activator
                     domain-containing protein"
                     /protein_id="HYE13798.1"
                     /translation="MPTLTVRLFGKFSARHREQTLDGLDASKVQELLSYLLVRRDRPH
                     PREALASLLWGDATTEKSKKYLRQALWHLQNALSGEEEGEADSLLTAEHDWVQLRLGA
                     EVWLDVAAFEGAYTSVRDRAGRDMSAQDACALQEAVRLYRGDLLEGWYQDWCLFERER
                     LQNIYLSMLHKLMGYCGAHCEYETGQHYGSLILGQDRASERTHRHLMYLHYAAGDRTA
                     ALRQYERCVAALEEELGVGPDGRTVRLYEQIRADHLQGEASAPAPQPAPQQQPTGLAS
                     LPEMLGRLRQLQDILSDVQQRVQHDIREVELALKQKAHRATNR"
BASE COUNT          420 a          937 c          790 g          392 t
ORIGIN      
        1 tcggtcgagc ccgcgaagac catgtcgccg tctaacgcga ctggcgcgcg cagagccttg
       61 cgcgtgcggt agcgccagag cgtgcggccc gtcgcgcggt caaccgcgtg tagcgtcccg
      121 tcctcgccgc cgacgtagag ccggccgtct cgcaacaccg gccgcgactg gaacggggct
      181 gggaactggc tcacccacag aagctcgccc gtctccttct tcaaggcgta gagacggccg
      241 tcctcggccc cgccgtagag cgccctctcg tcggcgacga gcgcgccgcg caagggcgcc
      301 gtgagcgtcc gcatccagag cgtcacgccg ctctgcgagc cgagtgcgcg gagtgccccc
      361 gcgacgcgcg gcgctgcggc cgcctcgccg ccgggcagga cgctctccga cgcgacataa
      421 acgccccgcg cgtccgctgc gggcgcggcc gagattgcgc cgcccatgtc cgtcttccag
      481 acgagccggc cgtcacccgt ccgcagcgag acgagcgctc cgccgacgag cggcaggtac
      541 acggcgccgt cgcccagcgc aggcgtcagg ttcacggtgt cgttcgtctc gaaggcccag
      601 cgcaggctca aaggcttcga gagcgcgagc gcctcgcgct ctgcgaaggc cggctcgtct
      661 tgcgcgcgcg cgacgccggc ccccgcgagc gcggccagga gcaggccgag cgccgccggc
      721 atcgcccaga ctttccgcgc gcgcctcttc atgccgacat tatataggct cgccttttgt
      781 caggcatttc acggaatgaa taagtcttcg gcctcgctcc gttcatggat attgacaaag
      841 ccggcaggga gagctataaa acgcagcgct tcgcaaaccc gtttagatga ccggccgccc
      901 ccgaccgggc tttaccttct tgccgggtct ctcgtaccgg cgttctatcc gaggggaacc
      961 gaaccgggca gttttcttta tgggcgcgct tcagcccctg cggggctgac ccgacgaact
     1021 ccttggccgc ccgctgccgc cttatccgtt tcgatccgcg ttcccgctcg ccgccgtttt
     1081 cactctctgc ccctgtagag tctcgccccg caacctcgct tttgcgaaac tgctcccgca
     1141 gacgaaggtg tgctcacttc accctcacgc ggcggcccag cgtttcagga gtgactcaca
     1201 tgccgacact taccgttcgt ctcttcggca agttcagcgc gcggcaccgt gaacaaaccc
     1261 tcgacggtct cgacgcctcg aaggttcagg agcttctaag ctacctgctc gtccgcagag
     1321 accgcccgca cccgcgcgag gccctcgcct cgctcctctg gggcgacgca accacggaga
     1381 agtcaaagaa gtacctgcgc caagccctct ggcacctgca aaacgcgctc tcgggcgagg
     1441 aagaaggtga ggccgattct ctgctgacgg ccgagcacga ctgggtgcag ctccgcctcg
     1501 gcgcagaagt ctggctcgac gtggccgcct tcgagggcgc gtacacgtcc gtccgcgaca
     1561 gggccggccg cgacatgagc gcgcaggacg cgtgcgcctt gcaggaggcc gtgcgcctct
     1621 accgcggcga cctgctcgaa ggatggtatc aggactggtg cctattcgag cgcgagcgct
     1681 tgcagaacat ctacctctcg atgctccaca agctgatggg ttattgcggc gcccactgcg
     1741 agtacgagac ggggcaacac tacggctcgc tcatactcgg ccaggatcgc gccagcgagc
     1801 gcacgcaccg ccacctgatg tacctgcact acgccgcggg cgaccgcacg gcggcgctcc
     1861 gtcaatacga gcgctgcgtc gcggcgctcg aagaggaact gggcgtcggc ccagacggcc
     1921 gcacagtccg cctctacgag cagattcgcg ccgaccacct gcagggagaa gcctcggcgc
     1981 cggccccgca gccggccccg cagcagcaac ccacgggcct agcctcgctc cccgagatgc
     2041 tcggccgcct gcggcagctt caggacatcc tctccgacgt gcagcagcgc gtacagcacg
     2101 acatacgcga ggtcgagctc gccctcaagc agaaggccca tcgcgccacc aaccgctgag
     2161 ccgattgcgg gttagagaaa gccaagaggg ttgacgatag cggcgctatc gtcaaccctc
     2221 ttcgtctatc catcctcaga gacgctccga gagacgcgcg ggagacgcgc gtgcgaatcg
     2281 gcgtctgcta taccttcgcg ccgtgctcgc aacgcggcct cgcgtcttcg tcggacgggc
     2341 gaccggcgcc cccggctcgg tgatcggctc ccgatggtca gccccccgca cgcagaaccg
     2401 gacacgcacg cttcgagcgt gcactccttc atcgtcaagc tctggctcga gccgcccgcg
     2461 gacaaaggcg cgcgggcctc ctggcacggc agcatcactc acgtcccgga cggcaaccgc
     2521 cagtacctga gagagctcg
//
LOCUS       DASPKR010000184         5916 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_22966, whole genome shotgun sequence.
ACCESSION   DASPKR010000184 DASPKR010000000
VERSION     DASPKR010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5916)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5916
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22966"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..637
                     /gene="pyrH"
                     /locus_tag="VD968_05085"
     CDS             <1..637
                     /gene="pyrH"
                     /locus_tag="VD968_05085"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR02075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HYE13799.1"
                     /translation="RSVAEEIKAVHALGVEVAVVVGGGNIFRGVSESAGNMDRSAADY
                     IGMLATVMNAVVLQDALEKTGVHTRVLSAINIPQVAEPFIRRRAVRHLEKKRVVIFAG
                     GTGNPYFTTDSAAALRALEIKADAIIKATKVEGVYTADPVKDPSATRYDAITYQEVLE
                     RQLKVMDASAISLCMDNDLPIIVFNMLRPGNIMRVVMGEAGVGTRVSNQKP"
     gene            666..1226
                     /gene="frr"
                     /locus_tag="VD968_05090"
     CDS             666..1226
                     /gene="frr"
                     /locus_tag="VD968_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HYE13800.1"
                     /translation="MSEKDVIRETRPRMESAVEDLRKKLATIRTGRAVVSLLDPVTVE
                     YYGTPTPLNQMASVHAPEPNLLTVQPWDQTQLGAIEKAIRSADLGLNPTNDGKMVRVP
                     VPPLTEERRRQLAKQVHEAAEEHRTAVRNIRRDSNDRLKRMLKEKQISEDAERDALEE
                     IQKLTNTFIGKIDELAKTKEQEILSV"
     gene            complement(1303..4314)
                     /locus_tag="VD968_05095"
     CDS             complement(1303..4314)
                     /locus_tag="VD968_05095"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE13801.1"
                     /translation="MKVSLKFFGRAIVLALAFALSGLATAAAPQQPSTGTLRGQVMDE
                     FGGVIVGATVTVVGAEGREKTAQSNNDGNYVVAGLAPGAYIVRAVSPGFALYENAEVV
                     VAAGRTEPLNITLGVSLEKEEVTVASEGPVSIDNTNPGAIVLKGKDLEALPEDPDELA
                     AALSALAGPAAGPNGGQITIDGFEGGRIPSRDSIREVRVNDNPLSAENDRPGFGGIQI
                     LTKPGTEKLRGSAGMTFNDESMNSRNPFLRSEKRPPFQFRQFNGNLSGSIVPRKSSFF
                     VDFNRSETDDNDLVNGFVLDPLTGGPLPFNLAVLTPRRNWSFSPRVDYAINDSNTLIA
                     RYSYYHNDDQNLGVSQYSLPERAFDQVSSGHTLQLTETAVLNKTTVNETRFQLLRNRF
                     EQDALNDGFAVNVFDAFSSGGATVGNSFNENNRWELTNVTTQARGNHSVKFGARLRGI
                     RVSDFSENNFNGTFTFSSLEQYRQALEGSALPTQLSLVGGEPLSEISQVDFGGFVQDD
                     WKVRPNLTLGGGLRYERQTNIESSFNVAPRVYLAWSPDGGVQQQAKTVIRLGFGIFYD
                     RISENISLQALRFNGLGQQQFIISAPLPTDTSERAQRARELLGLFPDISSGAVPMPTV
                     EELSGFALQQTTRQLADDATAPYSYISGIIVTRQLSKTATLNLFFSTYDTRHLLRSRN
                     INAPLPNGLRPRPELGNIFQYETSATQSMKQLNISVSKQFHRAFSVNANYSIGKAQSS
                     ADFGGFPVNQYDLTGEYGRTSFDTRHRFVLFASLGVPVLKLALQPFLIANTGRPFNII
                     TGVDNNRDGIINDRPAFADSHTAAADLRRTPWGDFDINPKPGQAIVPRNYGEGPGFFA
                     VNMRVSRTFSFGDTAASRAAAQAREQQQAANRQQGGGGRGGNNRGGGQGGPGGGGPGR
                     GPVPGGMGGGPMMMMMGAPGGGGEGKRYTLNFSLNFINLLNRTNLSSPVGNLSSPNFG
                     QSLFSVGGFGGVGGNQAAGNRRIQASVRFSF"
     gene            complement(4351..5625)
                     /locus_tag="VD968_05100"
     CDS             complement(4351..5625)
                     /locus_tag="VD968_05100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13802.1"
                     /translation="MRRMWATMLLSAALLAGGAAVTAQTSDPGITANGVIGEVVALDA
                     AAKQIFVKTDRGSVVTVTVADSSQFKKLPPGETTLAKATDMTFAQLTAGDRVFARGAV
                     SDDRKTVMARILIVNTKADLEAKRAADRAEWQKRGIVGVVSAVNPQAKEITIQTRTPE
                     GPKPVVIAAGAPGVKLRRYAPDSVRFADAKPSTFEEIKAGDQLRAKGEKSEDGARFTP
                     EEVVTGSFRTTLGAITAVNAEKNEISIVQPMQGGAPLTIVVRPDSVLKQVPAEFAARF
                     AGGPGGPGGAPGAPAGSGQGQQPQQRPAGPPPAAGQPQQQAGGPGGGQPGQGGPRRMG
                     GPDIQQMLEMLPAATLAELKPGQMIVVSSTVGADPSRVTAIQLVAGIEPIVQAMMARQ
                     GGGRPSGGGGGGIPSLGGGAAGINFGFGIGQP"
BASE COUNT          920 a         1860 c         2134 g         1002 t
ORIGIN      
        1 gcgctcggtg gccgaagaga taaaggccgt ccacgcgctc ggcgtcgagg tggccgttgt
       61 cgtcggcggc ggcaacatct tccgcggcgt ctccgagagt gcgggcaaca tggacaggtc
      121 ggcggccgac tacataggca tgctcgccac cgtgatgaac gccgtggtac tccaggacgc
      181 gctcgaaaag acgggcgtcc acacgcgcgt gctctcggcg ataaacatcc cgcaggtggc
      241 cgagcccttc atacgccgcc gcgccgtccg ccacctcgag aagaagcgcg tagtcatctt
      301 cgccggaggc accggcaacc cgtacttcac gaccgactcg gccgcggcgc tgcgcgccct
      361 ggagattaag gccgacgcga tcatcaaggc cacgaaggtc gagggcgtct atacggccga
      421 ccccgtcaaa gacccctcgg ccacgcgcta cgacgcgatc acctaccagg aggtgctgga
      481 gcgccagctc aaggtgatgg acgcctcggc cataagcctc tgcatggaca acgacctgcc
      541 cataatcgtc ttcaacatgc tcaggcccgg taacatcatg cgcgtcgtga tgggcgaggc
      601 gggcgtcggc acgcgggtca gcaaccagaa gccttaacgg cggcaccgtt tttcaggaga
      661 gagccatgag cgagaaggac gtaatcaggg agacgcggcc gaggatggag tcggcggtcg
      721 aggacttgag gaagaagctg gcgacgataa ggactgggcg cgccgtcgtg agcctgctag
      781 accccgtcac ggtcgagtac tacgggacgc cgacgcccct gaaccagatg gcgtccgtcc
      841 acgcgccgga gcctaacctg ctcaccgtgc agccgtggga tcagactcag ctcggcgcca
      901 tcgagaaggc catacgctcg gccgacctgg gcctcaaccc cacgaacgac ggcaagatgg
      961 tgcgcgtgcc ggtgccgccc ttgacggagg agcgccgccg gcagctcgcc aagcaggtgc
     1021 acgaggcggc cgaggagcac cgcacggccg tccgcaacat ccgccgcgac tcgaacgacc
     1081 gcctcaagcg gatgctcaag gagaagcaga tttccgagga cgcagagcgc gacgccctcg
     1141 aagagataca gaagctcacc aacaccttca tcggcaagat agacgagctc gccaagacca
     1201 aagagcagga gattctgagc gtctagggcg ccgggataaa aaagcgcgag ggccgcgggt
     1261 gatttaagcc cgcggccctc gctgttttcg ctcgccgctc ctttagaagc tgaagcggac
     1321 ggaggcctgt atgcggcggt tgcccgcggc ctggttgccg ccgacgccgc cgaagccgcc
     1381 gacggagaag agcgactgcc cgaagttggg cgagctcagg ttgcccacag ggctggacag
     1441 gttcgtgcgg ttgagcaggt tgatgaagtt gagcgagaag ttcagcgtgt agcgcttccc
     1501 ttcgccgccc ccgcccggcg cgcccatcat catcatcatc ggcccgccgc ccatgccgcc
     1561 cggtacgggc ccgcggcccg gcccgccgcc gcctgggcca ccctgcccgc cgccgcggtt
     1621 gttgccgccg cggcccccgc cgccctgctg ccggttggcg gcctgctgct gctctcgggc
     1681 ctgcgcggcc gcgcgcgagg cggccgtgtc gccgaaggag aaggtgcggc tgactctcat
     1741 gttgacggcg aagaagccgg ggccttcgcc gtagttgcgc gggactatgg cctgacccgg
     1801 cttggggttg atgtcgaagt cgccccaggg cgtccgccgg agatccgcgg cggccgtgtg
     1861 tgagtcggcg aacgcggggc ggtcgttgat gatgccgtcg cggttgttgt caacgccggt
     1921 gatgatgttg aaggggcgcc ccgtgttcgc tatgaggaac ggctgtagcg cgagcttcaa
     1981 gacggggacg ccgagcgagg cgaacaggac gaagcggtgg cgcgtgtcga aggacgtgcg
     2041 cccgtactcg cccgtcaggt cgtactggtt gacggggaag ccgccgaagt cggcgctcga
     2101 ctgcgccttc cctatcgagt agttggcgtt gacggagaag gcgcggtgga actgcttgct
     2161 cacgcttatg ttgagctgct tcatgctctg cgtcgccgag gtctcgtact ggaagatgtt
     2221 gccgagctcc ggcctcggcc tcagaccatt cggcagcggc gcgttgatgt tgcgcgagcg
     2281 caggaggtgg cgcgtgtcgt aggtggagaa gaagaggttg agcgtcgccg tcttcgagag
     2341 ctggcgcgtc acgatgatgc cgctgatgta ggagtagggc gcggtggcgt cgtcggcgag
     2401 ctggcgcgtc gtctgctgga gcgcgaagcc gctaagctcc tcgaccgtcg gcatcggcac
     2461 cgcccccgaa gagatgtcgg ggaagagccc gagcagctcg cgcgcgcgct gggcgcgctc
     2521 cgaggtgtcg gtcggcagcg gcgcgcttat gatgaactgc tgctggccga gcccgttgaa
     2581 gcgcagggcc tgtagagaga tgttctcgct tatgcggtcg tagaagatgc cgaagccgag
     2641 gcggatgacg gtcttcgcct gctgctgcac gccgccgtcg ggcgaccacg cgagatagac
     2701 gcgcggggcg acgttgaagc tgctctctat gttggtctgc ctctcgtagc gcaggccgcc
     2761 gccgagcgtc aggttcggcc gaaccttcca gtcgtcctgc acgaagccgc cgaagtccac
     2821 ctggcttatc tcggagagcg gctcgccgcc cacgagcgag agctgcgtgg gcagggccga
     2881 gccctcgagc gcctgccggt actgctcgag cgagctgaag gtgaaggtgc cgttgaagtt
     2941 gttctccgag aagtccgaga cgcgtatgcc gcgcaggcgg gcgccgaact tcacggagtg
     3001 gttgccgcgc gcctgcgtcg ttacgttggt cagctcccag cggttgttct cgttgaagga
     3061 gttgccgacc gtggcgccgc ccgacgagaa ggcgtcgaag acgttgacgg cgaacccgtc
     3121 gttgagcgcg tcctgctcga agcggttgcg tagaagctgg aagcgcgtct cattgacggt
     3181 cgtcttgttg aggacggccg tctcggtgag ttgcagcgtg tggccgctcg atacctggtc
     3241 gaaggcgcgc tcgggcagcg agtactgcga gacgccgagg ttctggtcgt cgttgtggta
     3301 gtagctgtag cgcgcaataa gcgtgttgct gtcgttgatg gcgtagtcaa cgcgcgggct
     3361 gaagctccag ttgcggcggg gcgtcaagac cgcgaggttg aagggcaggg ggccgcccgt
     3421 cagggggtcg agcacgaagc cgttgacgag gtcgttgtcg tccgtctcgc tgcggttgaa
     3481 gtcaacgaag aaggaggact tcctcgggac gatggagccg gagaggttcc cgttgaactg
     3541 gcggaactgg aacggcgggc gcttctcgct ccggaggaac gggttgcgag agttcatgct
     3601 ctcgtcgttg aaggtcatgc cggcgctgcc gcgcagcttc tcggtgccgg gcttggtgag
     3661 aatctgtatg ccgccgaagc cggggcggtc gttctcggcc gagagcgggt tgtcgttgac
     3721 gcgaacctcg cggatggaat cgcgcgaggg gatgcggccg ccctcgaagc cgtcaatggt
     3781 tatctgcccg ccgttggggc cggcggccgg gccggctagc gccgacaggg cggccgccag
     3841 ctcgtccggg tcttcgggca gcgcctccaa atctttgccc ttgaggacga ttgcgccggg
     3901 gttcgtgttg tctatgctta cggggccttc ggaggcgacc gtcacctcct ccttctccag
     3961 agagacgccg agcgtgatgt tcagaggctc ggtgcggccg gcggcgacga ctacctcggc
     4021 gttctcgtag agcgcgaagc ccggcgagac ggcgcgcacg atgtaggcgc cgggcgcgag
     4081 ccccgccacg acgtagttgc cgtcgttgtt cgactgcgcg gtcttctccc tgccctcggc
     4141 gcccacgacc gtcacggtcg cgccgacgat gacgccgccg aactcgtcca tgacctgccc
     4201 gcgcagcgtg ccagtcgagg gctgctgcgg cgccgcggcc gtcgcgagcc cagacagggc
     4261 gaaagcgagc gcgaggacga tggcgcgacc gaaaaattta agtgagactt tcatcatcag
     4321 tgccttcttc aaagtaatca ggaatccgtc ctacggctgg ccgatgccga agccgaagtt
     4381 gatgcccgcg gcgccgccgc cgaggctggg gatgccgccg ccgccaccgc cgctggggcg
     4441 cccgccgccc tgccgcgcca tcatcgcctg gactatcggc tcgatacccg cgacgagttg
     4501 gattgccgtg acgcgcgagg ggtctgcgcc cacggtgctc gagacgacga tcatctgacc
     4561 gggctttagc tcggcgagcg tcgcggccgg gagcatctca agcatctgct gtatgtcggg
     4621 cccgcccatg cggcgcggcc cgccctgacc gggctggccg ccgccggggc cgcccgcctg
     4681 ctgctgcggt tggcctgcgg ccgggggagg ccctgcgggg cgctgctgcg gctgctggcc
     4741 ctgcccgcta cctgcggggg ctccgggcgc tccgcccggc ccgccggggc cgccggcgaa
     4801 gcgtgcggcg aactcggccg ggacttgctt gagcacggag tcggggcgca cgacgattgt
     4861 gagcggggcg ccgccctgca tgggctgcac gatgcttatc tcgttcttct ctgcgttgac
     4921 ggccgtgatg gcgccgagcg tggtgcggaa cgagccggtc acgacctcct cgggcgtgaa
     4981 gcgggcgccg tcctcgctct tctcgccttt ggcgcggagc tggtcgccgg ccttaatctc
     5041 ctcgaacgtg gagggcttgg cgtcggcgaa gcggacggag tcgggcgcgt agcggcgcag
     5101 cttgacgccg ggcgcgcccg cggcgatgac gaccggcttc ggcccctcgg gcgtgcgcgt
     5161 ctgtatggtt atctctttgg cctgcgggtt gacggccgag acgacgccga cgatgccgcg
     5221 cttctgccat tcggcgcggt cggcggcgcg cttggcttcg aggtcggcct tcgtgttgac
     5281 gatgaggatg cgggccatga ccgtcttgcg gtcgtcggag acggcgccgc gcgcgaagac
     5341 gcggtcgccc gccgtgagct gcgcgaaggt catgtcggtg gccttggcga gcgtcgtctc
     5401 gcccggcggc agcttcttga actgcgagct gtcggcgacc gtgacggtga cgaccgagcc
     5461 cctgtccgtc ttgacgaaaa tctgtttggc ggccgcgtcg agggcgacga cctcgccgat
     5521 gacgccgttg gccgtgatgc ccgggtcgct ggtctgcgcg gtgacggccg cgcccccggc
     5581 cagcagggcg gcggacagga gcatggtggc ccacattctt ctcatggatg atcctcttgt
     5641 gcctacgtgc gcgtatgtaa cgggtgagag cggaaccgcc cgccgcttga cagctttttt
     5701 acgccgacgc ggcggcgatt gttccgccga aacccatctc cgattcacat tcgtggccgg
     5761 cggggttccg ctttaaacgg ggggaagcgg ccggaggttt tagacgcgag gatggccggg
     5821 aaggtttaac gatttttcac gtacaagtcc aattttttag acgaaacagg ccggggcccg
     5881 gcccctcggg ggttggcggc gcgaatgagg ccggag
//
LOCUS       DASPKR010000185         6682 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1447683, whole genome shotgun sequence.
ACCESSION   DASPKR010000185 DASPKR010000000
VERSION     DASPKR010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6682)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6682
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1447683"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /locus_tag="VD968_05105"
     CDS             complement(<1..405)
                     /locus_tag="VD968_05105"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Catalyzes the transfer of electrons from NADH to
                     quinone; Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HYE13803.1"
                     /translation="MHQIEVATTQETLLDNPEMVLNMGPQHPSTHGVLRVILRLDGET
                     VIDLDCDIGYLHRGMEKIAENRLYPMIAPYWDRLDYIAAVSNGLVWVETVEQMMGLEV
                     PPRAHYIRVILTELNRISSHLLWLATHGLDIGA"
     gene            complement(486..725)
                     /locus_tag="VD968_05110"
     CDS             complement(486..725)
                     /locus_tag="VD968_05110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13804.1"
                     /translation="MHPKDLAAKYEVKVFDAPAAAEAAGYTLGQTMRPRNVWNRDSAA
                     AAVLYDLIGKRKRGEVSDIALVLETGGVTGAFKKE"
     gene            complement(732..1955)
                     /locus_tag="VD968_05115"
     CDS             complement(732..1955)
                     /locus_tag="VD968_05115"
                     /inference="COORDINATES: protein motif:HMM:TIGR01961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HYE13805.1"
                     /translation="MTDEPNNPPDDAADAPRPEGEGARRDDKAPSPGFESKDAGALPP
                     PPDAVGERPTPESQAALTGKAPSGSSSSGTTVPASSGETPEEKKARLERIIAEAKAKK
                     EAAAAAAAQAEGGGEAQPPGGKSPEVGDPLKSPSQADLERAAKIAEAKARAAAMKEAA
                     AAKSPAAKPATPAAAGSAAAGAPGAPKPPVKKKDEGPKPEDASGHPLVKRLRDRFSDS
                     VKGAFTFLGQLSIHVSAGSVVEVCRALRDDAETPFNYLSDVTCVHWPDREDEPFEVVY
                     NLYSISKNERVRLKVGAGDEGVESVTGVWPAANWMEREVYDMFGVRFRNHPDLRRLLL
                     PPDWEGHPFRKDYPLEFMENSWTTRHLPEFTDVQREQLEQRRAYGLEILQTPDERRLR
                     EIFRAGREVLPKEHK"
     gene            2282..2530
                     /gene="rpmE"
                     /locus_tag="VD968_05120"
     CDS             2282..2530
                     /gene="rpmE"
                     /locus_tag="VD968_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003151132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HYE13806.1"
                     /translation="MKQGIHPDYHEITVHCACGSNFQTRSTRKGDLHVEICSECHPFF
                     TGKQKLVDTAGRVDRFNKRYGRKAEAPAAPAPAEGAGA"
     gene            2698..3891
                     /locus_tag="VD968_05125"
     CDS             2698..3891
                     /locus_tag="VD968_05125"
                     /inference="COORDINATES: protein motif:HMM:NF018798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1385 domain-containing protein"
                     /protein_id="HYE13807.1"
                     /translation="MSANEKDLIVGGQAVIEGVMMRTPNAYAVAVRRPDGTITHTGAP
                     LPKWSDRAPVLRLPVLRGAAVLVQSMLLGIKALNYSAAEAFAEEKAEAKEVEVALTPA
                     VVEGEGDFAGITGGVPGLFPVPTKSRPEEELKKGSAAAFGSIAFALVFNVVLFIVAPL
                     VLTNALFLAAGWAAPAAVVEQSAAEAPAAQETTDGAGETARAAQPWYARAYGAARSYL
                     RPVRPSVAFNLVDGAIRMTFFLIMIFSFSLMKDIRRVFEYHGAEHKTVFTWEAGLPLT
                     VENARVQPRQHPRCGTSFLMVVMLVSVVLFSVVKFDSLLYNMLVRVALVPVIAGLSYE
                     IIRLSAKKEGGLVFKLITRPGVWLQNLTTKEPGDDQLEVAIIALKESLKLEPRPAAPA
                     PSPLS"
     gene            3907..4983
                     /gene="prfA"
                     /locus_tag="VD968_05130"
     CDS             3907..4983
                     /gene="prfA"
                     /locus_tag="VD968_05130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003202249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HYE13808.1"
                     /translation="MLEKLEQIEARYEALTEEISSPEVFSDPANYAKVSKQHRSLGEV
                     VEKYREWKQVKHELAGAKELFDLADDEEMRELARAEAAELEARLESVEEALRLLLLPR
                     DPNDEKNVILEIRAGTGGDEATLFAAEMLRMYGRYAERQGWRMEILDSSESGIGGVKE
                     AIAMIEGEKVYSKLKHESGVHRVQRVPQTETSGRIHTSAVTVAVLPEAEEVDVKIDPK
                     DLRIDTFCSSGPGGQSVNTTYSAVRITHMPTGLVVSMQDEKSQIKNREKAMRVLRARL
                     QELEEQKQHEALASERRSMVGSGDRSEKIRTYNFKENRVTDHRIGLTIHQLDLVMEGA
                     LDEIINTLVTHYQAEKLKAETVAA"
     gene            4991..5620
                     /locus_tag="VD968_05135"
     CDS             4991..5620
                     /locus_tag="VD968_05135"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HYE13809.1"
                     /translation="MEKTRVLLVRHGQSQGNAERRFGGHTPTPLSELGRRQAEATAGA
                     LSKEGVTAVYSSDLLRAVQTAEPLASASGLEVRRCAAFRERSVGRMEGLTFEEAAERF
                     PDEYAALLRRDFEHVLDGGESYRQLLDRSAAELDRAIEEHRGGTVVVFSHTGTICILA
                     LHLLGALDAPELRPVWISSANCGVTRFEIQHGGLTRLLAANDTRHLSGL"
     gene            5702..>6682
                     /locus_tag="VD968_05140"
     CDS             5702..>6682
                     /locus_tag="VD968_05140"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HYE13810.1"
                     /translation="MKNSDARRGRSAAAAAASILLILALAPYAPARQAGAAKGGAGSQ
                     KSLPAKSKRFALVVGVDKYADTQITTLGGASNDARSLASALVKYAGFPADQVVLLATD
                     QPEERQPTRGNILRRLSNLATVVPKDGLLLFAFAGHGMERGGQAFLLPSDAQVSDDVT
                     LLEQTAVNVLQIRDWVKRTGVKQVLMILDACRNDPSGRVNADNPLTETYTRGFNFDTR
                     NREVEAFVTLYATAIGHRAYEYKEKRQGYFTWALVEALRGAAANDRGEVTLDGLVKYL
                     QERVPKQVQIDLGAGKAQKPFAVIEGYKADELVLSVAEAGGRGLSAAPKDD"
BASE COUNT         1125 a         2243 c         2209 g         1105 t
ORIGIN      
        1 ggcgccgatg tcgaggccgt gcgtggcgag ccagaggagg tgtgacgaga tgcggttcag
       61 ttccgtgagg atgacgcgga tgtagtgcgc gcgcggcggg acttcgaggc ccatcatctg
      121 ctcgaccgtc tcgacccaga cgaggccgtt cgagacggcc gcgatgtagt cgaggcggtc
      181 ccagtagggc gcgatcatcg ggtacaggcg gttctcggct atcttctcca tcccgcggtg
      241 gaggtagccg atgtcgcagt cgaggtctat gacggtctcg ccgtcgaggc gcaggatgac
      301 gcgcaggacg ccgtgcgtcg aggggtgctg cggccccatg ttcaagacca tctcggggtt
      361 gtcgagcagc gtctcctgcg tggtggcgac ttcgatctgg tgcataacaa gtgcagaagt
      421 cagagtgcgg ggtgcagaat taaaagcaag acatctttaa ttctgcaccc tgcgctccgc
      481 acacatcact ccttcttgaa cgctcccgtc acgccgcccg tctccagcac gagggcgatg
      541 tctgagactt cgccgcgctt gcgcttgccg attaaatcgt agaggacggc tgcggcggcg
      601 ctgtcgcggt tccagacgtt gcgcggcctc atcgtctggc cgagcgtgta acccgcggcc
      661 tcggccgccg cgggggcgtc gaagacttta acctcgtact tggcggcaag gtctttcggg
      721 tgcattcccc tttacttgtg ctccttcggc agaacctcgc ggccggcgcg gaagatttct
      781 ctcaggcgtc gctcgtcagg cgtctgaagg atttcgaggc cgtaggcgcg cctctgttca
      841 agctgctcgc gctggacgtc cgtgaactcg ggcaggtggc gcgtcgtcca actgttctcc
      901 atgaactcta acggatagtc cttgcggaac gggtggcctt cccagtcggg cgggagcagc
      961 aggcggcgca agtcagggtg gttgcggaag cgcacgccga acatgtcgta aacctcgcgc
     1021 tccatccagt tagcagcggg ccacacgccc gtcacgctct cgacgccttc gtcgccggcg
     1081 cctaccttca atcgcacgcg ctcgttcttc gagattgaat agaggttata gacgacctcg
     1141 aacggctcat cttcgcggtc gggccagtgt acgcacgtca cgtccgagag gtagttgaag
     1201 ggagtttccg cgtcgtcgcg gagagcgcgg cagacctcga cgaccgagcc ggcgctcacg
     1261 tgaatcgaga gctggccgag gaaggtgaag gcgcccttga cggagtcgga gaacctgtcg
     1321 cggagccttt tgacgagcgg gtggccggag gcgtcctcgg gcttcggccc ttcgtccttc
     1381 ttcttgacgg gaggcttcgg cgcgccggga gcgcccgctg ccgcgctgcc ggccgcggcg
     1441 ggcgtcgcgg gcttcgccgc cggagacttc gcggccgccg cctccttcat cgcggcggcg
     1501 cgcgccttcg cctcggctat cttggcggcg cgctccaggt ctgcctgcga cgggctcttc
     1561 aaggggtcgc cgacctcggg cgacttgccg ccgggcggct gagcctcgcc gccgccttcg
     1621 gcctgcgctg cggccgccgc ggcggcctcc ttcttggcct tcgcctcggc gatgatgcgc
     1681 tcgagccgtg ccttcttctc ttcgggggtt tcgcccgagg aggcggggac ggtcgtgcct
     1741 gagcttgagc ttcccgaggg tgccttgccc gtaagcgccg cctgactttc gggggtgggg
     1801 cgctcgccga ccgcgtcggg cgggggcggg agcgcaccgg cgtctttgct ctcgaagccg
     1861 gggctgggcg ccttgtcgtc gcggcgcgcg ccttcgccct ccggtctcgg cgcgtcggcc
     1921 gcgtcgtcgg gagggttgtt gggttcgtcc gtcatcgctt cctgcggccc ggttctccgg
     1981 ccgaacgacg gtcgggtgaa gttacgcctt cggcctgcgg gagaatccgg tttgtgcgct
     2041 tatcaagatg ctcttccaga aagctttata aggagtgcca ggcgcgtttg taacacgcgc
     2101 tcctcgcgcc tgtcaatcaa ctctcccggc cccctccgcc cgacgaactc cgcgcccctt
     2161 tgcgcatcta aactgattcg gtgcgggcgg gcgccaactt gactgcgctc tccgtgagca
     2221 cttatcatct gacgtttggc cggagcgctt ttacggctcc tgtagagaac ggagacataa
     2281 aatgaagcaa gggattcacc cggattacca cgaaatcaca gtccactgcg cctgcggcag
     2341 caacttccag acccgctcga cgcgcaaggg cgacctccac gttgaaatct gctcggagtg
     2401 ccacccgttc ttcacgggca agcagaagct agtggacacg gccggccgcg ttgaccgctt
     2461 caacaagcgc tacggccgca aggccgaggc gcccgcggcc cccgcgcccg ccgaaggcgc
     2521 aggcgcctga tagcggtatc ggtaactgcc ccggcagcac gatgaagccg acacgacgcc
     2581 gcgactatta gcagccctta acctgacgcc gaccgtctcg cgtcccggcg aaagccttcc
     2641 tgctcgaagg ccgccgaacc cgaaacgagt cggcctcttt ttttacggag tgagaagttg
     2701 agcgctaacg agaaggactt gatcgtaggc ggccaggccg tcatagaggg cgtgatgatg
     2761 cgcacgccga acgcctacgc cgtggccgtg cgccgccccg acgggacgat tacgcacacg
     2821 ggcgcgcccc tgcccaagtg gagcgaccgc gcgccggtgc tcaggctccc cgtgctgcgc
     2881 ggcgcggcgg tgctagtcca atcaatgttg ctcggcatca aggcgctcaa ctactccgcg
     2941 gccgaggcgt tcgccgaaga gaaggcggaa gccaaagagg tggaggtcgc gctcacgccg
     3001 gccgtcgtcg agggcgaggg cgacttcgcc gggataacgg gcggcgtccc cggcctcttc
     3061 ccagtcccga ccaagtctcg gcccgaggag gagctgaaga agggctcggc ggccgccttc
     3121 ggctctatag ccttcgcgct cgtcttcaac gtcgtgctct tcatcgtcgc gccgctcgtg
     3181 ctcacgaacg cgctctttct tgccgccggc tgggccgcgc ccgccgccgt cgtggagcag
     3241 agcgcagcag aggccccggc cgcgcaggag acaaccgacg gcgcgggtga gacggcgaga
     3301 gccgcgcagc cttggtatgc acgcgcctac ggcgcggcgc gctcttacct ccggcccgtg
     3361 cgcccttccg tcgccttcaa cctcgttgac ggcgcgatcc gcatgacctt cttcctgata
     3421 atgatcttca gcttctcgct gatgaaggac atacggcgcg tcttcgagta ccacggcgcc
     3481 gagcacaaga ccgtcttcac gtgggaggca gggctccccc tcacggtcga gaacgcgcgc
     3541 gtgcagccgc gccagcaccc gcgctgcggc acgagcttcc ttatggtcgt catgctcgtc
     3601 tccgtagtcc tcttctcggt cgtcaagttc gactcgcttc tctacaacat gctcgtgcgc
     3661 gtggcgctcg tccccgtcat agcgggcctg tcctacgaga taatccgcct gtcggcgaaa
     3721 aaggagggcg gcctcgtctt caagctcatc acgcgccccg gcgtgtggct acagaatttg
     3781 acgaccaaag agccgggcga cgaccagctc gaagtcgcca tcatcgccct caaggagtcc
     3841 ctgaagcttg agccgcggcc ggcggccccc gcgccgtcgc cgctgtcgta aaagagcacg
     3901 aaagtcatgc tggaaaaact cgaacagatt gaagcgcgct acgaggccct gaccgaagag
     3961 atctcctcgc ccgaagtctt ctcagaccca gctaactacg cgaaggtgag caagcagcac
     4021 cgctccctcg gcgaggtcgt cgagaagtac cgcgagtgga agcaggtcaa gcacgagctc
     4081 gcgggcgcca aggagctttt cgacctggcc gacgacgaag agatgcgcga gcttgctcgc
     4141 gcggaggcgg cagaactgga ggcgcggctt gaatcggtcg aggaggcgct gcgcctgctc
     4201 ctgctcccgc gcgacccgaa cgacgagaag aacgtcatac tcgaaatacg cgcgggcacc
     4261 ggcggcgacg aggccacgct cttcgcggcc gagatgctcc gcatgtacgg ccgatacgcc
     4321 gagcggcagg ggtggcgcat ggagattctc gactcgtcgg agtccggcat cggcggcgtc
     4381 aaggaagcca tcgccatgat cgagggcgag aaggtctatt caaaactgaa acacgagtcg
     4441 ggcgtccacc gagtccagcg cgtcccgcag actgagacga gcgggcgcat acacacttcg
     4501 gccgtcacgg tcgcggtgct gcccgaggcc gaggaggtgg acgtaaagat tgacccgaag
     4561 gacttgcgca tagacacatt ctgctcctcg gggccgggcg gccagagcgt gaacaccacc
     4621 tactcggccg tgcgcataac gcacatgccc acggggctgg tcgtctcgat gcaggacgag
     4681 aagtcgcaga taaagaaccg cgagaaggcg atgcgggtgc tgcgcgcgcg ccttcaggag
     4741 cttgaggagc agaagcagca cgaggctctg gcctcagagc gccgctctat ggtcggcagc
     4801 ggcgaccgct ccgagaagat acgcacctac aacttcaagg agaaccgcgt caccgaccac
     4861 cgcatcggcc tcaccatcca ccagctcgac ctcgtcatgg agggcgcgct agacgagata
     4921 atcaacaccc tcgtcacgca ctaccaggcc gagaagctca aggccgagac cgtcgcggct
     4981 tagccccctc atggaaaaga cgcgcgtcct gctggtgcgc cacggccagt ctcagggtaa
     5041 cgccgagcgg cggttcggcg gccacacgcc gacgcccctg agcgagctgg ggcgcaggca
     5101 ggcggaggcc acggccgggg cgctctcgaa ggagggcgtg acggccgtct attcgagcga
     5161 cctgctgcgc gccgtgcaga cggccgagcc tctggcgagc gcctccgggc tcgaagtgag
     5221 gagatgcgcc gccttccgcg agcgcagcgt cgggcgcatg gaggggctca cgttcgagga
     5281 ggcggccgag cgcttccccg acgagtacgc ggcgctgctc aggcgcgact tcgagcacgt
     5341 gctcgacggc ggcgagagct accgccagct tctcgaccgc tcggccgccg agctagaccg
     5401 agcgatagag gagcaccgcg gcggcacggt cgtagtcttc tcccacacgg gaaccatctg
     5461 catactcgcg ctgcaccttt tgggcgcgct cgacgcgccg gagctgcggc cggtctggat
     5521 ttcctcggcc aactgcggcg tcacgcgctt cgagattcag cacggcggcc tcacgcgcct
     5581 gctcgccgcc aacgacacgc gccacctctc cggcctctga cgcgccgccc gccccgcgcc
     5641 tttgacaacg gcgcgccgac ggcttacttt ccaaaccgcc gccggcgcgg cttaaatctc
     5701 tatgaagaac tcggacgcga gacgtggacg aagcgcggcc gccgcggcgg cctccatcct
     5761 tctgattttg gcgctcgcgc cctacgcccc agcgcggcaa gcgggggctg ctaagggcgg
     5821 ggccggctct cagaagtcgc tgccggcgaa gtcgaagagg ttcgcgctcg tcgtcggcgt
     5881 tgacaagtac gccgacacgc agataacgac gctgggcggc gcgtcgaacg acgcgcgctc
     5941 gctcgcctcc gcgctcgtca aatacgccgg cttccccgcc gaccaggtcg tgctgctcgc
     6001 gacagaccag ccggaggagc gccagcccac gcgcggcaac atcctgcggc ggctctcgaa
     6061 cctcgcgacc gttgtgccga aggacggcct gctgctcttc gccttcgccg gccacggcat
     6121 ggagcggggc gggcaggcgt tcctgctgcc ctcggatgcg caggtctccg acgacgtgac
     6181 gctgctggaa cagacggccg tcaacgtcct gcaaatccgc gactgggtga agcgtaccgg
     6241 cgtcaagcaa gtccttatga tcctcgacgc ctgccgcaac gacccgtcgg gccgggtcaa
     6301 tgccgacaac cccttgaccg agacctacac gcgcggcttc aacttcgaca cgcgcaaccg
     6361 cgaggtcgag gcgttcgtca cgctctacgc cacggccata ggccaccgtg catacgagta
     6421 caaggagaag cgacagggct acttcacatg ggcgctcgtg gaggcgctac gcggcgcggc
     6481 cgccaacgac cgcggcgagg taacgctcga cggcctcgtc aagtatttgc aggagcgcgt
     6541 gccgaagcag gtgcagattg acctcggcgc agggaaggcg cagaagccct tcgccgtcat
     6601 cgaaggctac aaggccgacg agctcgtctt gagcgtcgcg gaagccggcg ggcgcggcct
     6661 ctccgccgcg ccgaaggacg ac
//
LOCUS       DASPKR010000186         2729 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1058601, whole genome shotgun sequence.
ACCESSION   DASPKR010000186 DASPKR010000000
VERSION     DASPKR010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2729)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1058601"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1752
                     /locus_tag="VD968_05145"
     CDS             <1..1752
                     /locus_tag="VD968_05145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13811.1"
                     /translation="QKIVENHPQYAGYNITTGDDARSLVMAVLVANMEDSRTKDNVYI
                     NQEKLAEAKDPGLLGEAADYADEYRRVLRPILQSVEVKRHVRIWLPGPSYIRMMRDRN
                     IIPTRPDWKNTAVKVVKGVGGFLSGLVEGFVTSIIDVFRGIYDLIKSIISTIGDLLSG
                     ELIQQAQEIYDKVVEMAANMTAEDFLKMIIGAVTAVVSEIFNDFMRRWDASNHYDKWH
                     FRGYVVGYIVAEVVLAIFTGGTTLAVKLLGKLGKVGALLMKVFRKVLGKVDDMFDAVP
                     GRKARRMGGKQDRDRDADAATEKAKQLPLALALSTALAETHDKADVPVTLALSSLKIA
                     IKPQFGWIKDFEAVPLGPGRYQIYMIASRHPVGDEYTTVNPPQGEAGKPSRPESGAEM
                     EERLLEGAVSPPSATYFGWKSGTGGGTFRGLAKELVKYAKKYKTAVATPGSSVLDEAT
                     LKFIQRKPGLKKWWDAELKGITDRMTVLRAEIRKAKGDHATLRKLRAEEQQLDEKLGG
                     LLDWAKKPVGNKKPDLVEVFPNKKVIEVTDITQRPFDPAHNFKTEFYVEVLKELTGWT
                     DVRGLEFARPTVVVPVK"
     gene            1810..>2729
                     /locus_tag="VD968_05150"
     CDS             1810..>2729
                     /locus_tag="VD968_05150"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE13812.1"
                     /translation="MPTHDRRAFVARAVEYFMRQDYEPKELIIVDDGSDAVADLVPDD
                     GRVRYVRLERRMSVGAKRNTACEHARGEVIAHWDDDDWHAPRRLSYQVEALLREGAEV
                     CGIRRLLFFEPSSGRAWLYTYPESQRPWLSGSTLCYTRAFWERTRFADVSVGEDARFL
                     WAGRPERIAVLDDNTFHVGIVHEENVSPKQTGGSYWKEVPSDGVRRLLGDDWGFYVPG
                     PDGGAPSPGEGAPRALVTAAYGIGDILRVTPLVRALALTGYSVDVLIAPDYPGVASLL
                     EGAPEIQRLFVYEGIRANRGLAPPPPGFDGG"
BASE COUNT          541 a          853 c          903 g          432 t
ORIGIN      
        1 cagaagatcg tggagaatca cccgcagtac gcgggctaca acatcacgac gggcgacgac
       61 gcgcgctcgc tcgtgatggc agtcctcgtg gcgaacatgg aggactcgcg cacgaaagat
      121 aacgtctata tcaatcagga gaagctcgcg gaggcgaaag accccggcct gctgggcgag
      181 gcggccgact acgccgacga gtacagacgg gtgctgcgcc cgatacttca gtcggtcgag
      241 gtcaagcggc acgttaggat ttggctgccc ggcccttcct acatccgcat gatgagagac
      301 cgcaacatca tcccgacgcg ccccgactgg aagaatacgg ccgtcaaggt agtgaagggc
      361 gtgggcggct tcctctcggg gctggtggag ggcttcgtca cctccatcat agacgttttc
      421 aggggcatct acgacctcat caagtcaatc atctcgacga taggcgacct gctgagtggg
      481 gagctgatac aacaggcaca ggagatttac gacaaggtcg tggagatggc ggcgaatatg
      541 acggccgagg atttcctcaa gatgatcatc ggggccgtca cggccgtcgt ctcggaaatc
      601 ttcaacgact tcatgaggcg ctgggacgcg agcaaccatt acgacaagtg gcacttccgc
      661 ggctacgtgg tcggctacat cgtcgcagag gtagtgttgg caatctttac gggcggcacg
      721 acgctggccg tgaagctgct gggcaagcta ggcaaagtag gcgccctgct catgaaggtt
      781 ttcaggaagg tactcggcaa ggtggacgac atgttcgacg ccgtcccagg ccgcaaggcc
      841 cgccgcatgg gggggaagca agaccgcgac cgcgacgccg atgccgccac cgaaaaggcg
      901 aagcaactcc cactcgccct tgccctctcc acggcgctcg ccgagacgca tgacaaggcg
      961 gacgtgcccg taaccctcgc tctatcttcg ctcaagatag cgatcaagcc gcagttcggc
     1021 tggatcaaag acttcgaggc ggtgcctctg gggccgggcc gctaccaaat ctacatgatc
     1081 gcgtcgcgcc accccgtggg cgacgagtac actacggtca acccgccgca gggcgaggcc
     1141 ggcaagccca gccgacccga gtccggggca gagatggagg agcggctcct cgaaggcgcc
     1201 gtctctcccc ccagcgcgac ctacttcgga tggaagtccg gcacaggcgg cggcaccttc
     1261 aggggcctcg cgaaggagct ggttaagtac gcgaagaagt acaagacggc ggtcgccacc
     1321 cccggctcct ccgtgctcga cgaggcgacg ctcaaattca tacagcggaa gcccggcttg
     1381 aagaagtggt gggacgccga gttgaaggga attaccgacc gcatgacggt cttgagggcc
     1441 gagattagga aggcgaaagg cgaccacgcg acgctgagga agctccgcgc cgaggagcag
     1501 caactcgacg agaagttggg cgggctgctc gattgggcta aaaagccggt gggaaataag
     1561 aagccggatt tggtcgaggt gttccccaac aagaaagtca tcgaggtgac ggacatcacc
     1621 cagcggccct tcgaccccgc tcacaacttc aagacggagt tctacgtcga ggtgttgaag
     1681 gagctgacgg gctggacgga cgtgcgcggg ctcgagttcg cgcggccgac ggtggttgtc
     1741 cccgtcaagt gaaggggcgg acagtcagac atgctctcga acgattcaaa acccctggtc
     1801 tcatgcatca tgccgacgca cgaccggcgc gccttcgtcg ctcgcgccgt cgagtacttc
     1861 atgcgccagg attacgagcc gaaggagctg ataatagttg acgacggctc ggacgccgtc
     1921 gccgacctgg tgcctgacga cgggcgggtg cgctacgtgc ggctcgagcg ccgcatgtcg
     1981 gtcggggcga agcgcaacac cgcgtgcgag cacgcgcgcg gcgaggtcat agcccattgg
     2041 gacgacgacg actggcacgc cccccgccgt ctcagctacc aagtcgaagc gctcctgcgc
     2101 gaaggcgctg aggtctgcgg catacgacgg ctgctcttct tcgagccgtc gagcggccgc
     2161 gcatggctct acacataccc agagtcgcag aggccctggc tctccgggag cacgctctgc
     2221 tacacgcgag cgttctggga gcgcacgcgc ttcgctgacg tgagcgtcgg cgaggacgcg
     2281 cgcttcctct gggcgggccg ccccgagagg attgccgtcc tcgacgacaa cacttttcac
     2341 gtcggcatcg ttcacgaaga gaacgtcagc ccgaagcaga ccggcggctc gtactggaag
     2401 gaagtgccgt ccgacggggt gaggcggctg ctcggcgatg actggggatt ctacgtcccc
     2461 ggcccggacg gcggagcgcc ctcgcccggc gagggcgctc cgcgcgctct ggtgacggcc
     2521 gcctacggca taggcgacat cctgcgcgtc acgccgctcg tgcgcgcgct cgctctgacg
     2581 ggttatagcg tggacgtgct catcgcgccg gactaccccg gcgtcgcctc gctgctcgaa
     2641 ggcgcccccg agattcaacg cctcttcgtc tatgaaggca tcagggctaa cagggggctc
     2701 gcgccgccgc cccccggctt cgacggcgg
//
LOCUS       DASPKR010000187         2452 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1575929, whole genome shotgun sequence.
ACCESSION   DASPKR010000187 DASPKR010000000
VERSION     DASPKR010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1575929"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..845)
                     /locus_tag="VD968_05155"
     CDS             complement(<1..845)
                     /locus_tag="VD968_05155"
                     /inference="COORDINATES: protein motif:HMM:NF023818.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FhaA domain-containing protein"
                     /protein_id="HYE13813.1"
                     /translation="MGLLESIRKWIDGEVTDDPLAEVGEHARPRRVAEEFLVKVAREV
                     EAVMQREMLPTPGGPTYIPPEYVVYLSTEDDKDWQGEKRRALEQGLFHVLSERARELS
                     GQTQLATKSFAVELRVDGTLNKGEFRVQPVWETAEAGGHTMVTARPAELGQAAEGDAG
                     TGSLEGAENEVTKVSIRPVELYSVEVWKDGVRKSVVPVAKPEITVGRGSKSVSVDLPI
                     KGDPEVSRLHATLERDEQGRYWFTPKGRNPTFVSGREIAREERVQVQPDEKIDIASFT
                     LRIQP"
     gene            complement(880..>2452)
                     /locus_tag="VD968_05160"
     CDS             complement(880..>2452)
                     /locus_tag="VD968_05160"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HYE13814.1"
                     /translation="EMSELKLQQCRLDGRYDVLDCLGRGSYSEVYVARDEAAQQGEPR
                     TVVIKALNTHLQGVPDPELERTLVENFRNEAVALDRVRHPNIISRLGHGTAIDLQGRT
                     FHYLVLEYLPGGDMQALVLKRPLPLEGALFYLEQVCAGLAHAHKHDVIHRDIKPQNLL
                     LTADQHTLKIADFGVAKIEAAEGLITRVGTDVYAAPEHHPLSTTGPLDTASLARRVVQ
                     LTPAADIYSLAKTTYMLLTGEAPRRFSRKPISSLPEAFSSRPWSRYVLRVLERATQTR
                     PAERYQSVEEFWREIKDATMAETRPLRSNGRDPAPPSPGPGGGDAFTPPPPAPTFDRE
                     ARAPADSARHHRIVVPISAAREHAPIAPAAQERFAAPAAHTSAPPVRPSPREEFEREM
                     AGRREREPSRLRSLLVALVLLLAFSGMLYATYKYVSSQDRPRTSQGGAQSGGATTSAP
                     VGREFVATTDVNLRDAPDGGAKRVGMAERNSRVRVLQTSGRWYRVQIVEHGRPKANPS
                     DSDEGWANSAFLRAQ"
BASE COUNT          330 a          828 c          871 g          423 t
ORIGIN      
        1 ttcggctgaa tcctgagcgt gaagctggcg atgtctatct tctcgtcggg ctgaacctgc
       61 acgcgctcct cgcgggcaat ctcgcgcccc gatacgaagg tggggttgcg gcccttcggc
      121 gtgaaccagt agcggccctg ctcgtcgcgc tcgagcgtcg cgtgcaggcg gctcacctcc
      181 gggtcgccct tgatggggag gtcaaccgag acggacttcg agccgcggcc aacggttatc
      241 tccggcttcg cgacgggtac tacggacttc cgcacgccgt ccttccagac ctcgacgctg
      301 tatagctcga ccgggcggat ggagaccttc gtgacctcgt tctcggcgcc ttcgaggctg
      361 ccagtccccg cgtcgccttc ggcggcttgg cccaattccg cgggccgcgc cgttaccatc
      421 gtgtggccgc cggcctcggc agtctcccag acgggctgca cgcggaactc gcctttgttg
      481 agcgtgccgt caacgcggag ctcgacggcg aacgacttcg tggcgagctg cgtctggccc
      541 gaaagctcgc gggcgcgctc ggagagaacg tggaagaggc cctgctcgag cgcgcggcgc
      601 ttctcgccct gccagtcctt gtcatcctcg gtcgagagat agacgacgta ctcgggcggg
      661 atgtaggtag gcccgccggg cgtgggcagc atctcacgct gcatgacggc ctcgacctcg
      721 cgcgccacct tgacgaggaa ctcctcggcc acgcggcgcg gccgcgcgtg ctcgcccacc
      781 tcggcgagtg ggtcgtccgt cacctcgccg tcaatccact tgcgaattga ttccagtaag
      841 cccaccttta gtctctcacc tctcgtgaag ctttgcgtct cactgcgccc ggaggaacgc
      901 gctgttggcc cagccctcgt cgctgtccga agggttcgcc ttcgggcggc cgtgctcgac
      961 tatctgaacc ctgtaccagc gccccgacgt ttgcagcacg cggacgcgcg agttcctctc
     1021 ggccatgccg accctcttgg cgccgccgtc cggcgcgtcg cgcaagttta catcggttgt
     1081 cgccacgaat tcacgcccga cgggcgcgga agtcgtcgcg ccgcccgact gggcgccgcc
     1141 ctgcgacgtg cgcgggcggt cctggctgct cacgtacttg taggtggcgt agagcatgcc
     1201 ggagaaggcg agcagaagca cgagcgcgac tagcaggctc cgcagcctcg acggctcgcg
     1261 ctcgcgccgc ccggccatct cgcgctcgaa ctcttcgcgc gggctcggcc tcacgggcgg
     1321 ggcgctcgtg tgcgcggcgg gcgcggcgaa gcgctcctgc gccgccgggg cgatgggcgc
     1381 gtgctcgcgc gcggccgaga tggggacgac tatgcggtgg tggcgggcgc tgtcggccgg
     1441 tgcgcgcgcc tcgcggtcga aggtaggcgc gggcggcgga ggcgtgaagg cgtcgccgcc
     1501 gccggggccg ggggacggcg gcgcagggtc tcggccgttc gagcgcagcg ggcgcgtctc
     1561 tgccatagtc gcgtccttta tctcgcgcca gaactcttcg acgctctggt agcgctcggc
     1621 gggccgcgtc tgcgtcgcgc gctccagcac gcgcaggacg taccgcgacc acggccgcga
     1681 ggagaaagcc tcgggcagag acgatatcgg cttgcgtgag aagcggcgcg gcgcctcgcc
     1741 cgtaagcaac atgtaggtcg tcttggcgag cgagtagatg tcggcggcgg gcgtcagttg
     1801 cacgacgcgg cgagcgagcg aggcggtgtc gagcggcccc gtcgtggaga gcgggtggtg
     1861 ctcgggcgcg gcgtaaacgt ccgtgcccac gcgcgtaatc agcccctcgg ccgcctctat
     1921 cttcgccacg ccgaaatccg cgatcttcag cgtgtgctgg tcggccgtga gcaggaggtt
     1981 ctgcggcttt atgtcgcggt ggattacgtc gtgcttgtgc gcgtgagcga gcccggcgca
     2041 gacctgctcc aggtagaaga gcgcgccttc gagcgggagc gggcgcttaa gcaccagcgc
     2101 ctgcatgtcg ccgcccggca ggtattcgag cacgaggtag tggaacgtgc gcccctgaag
     2161 gtcaatggcc gtgccgtggc cgaggcggct gatgatgttc gggtggcgaa cgcggtcgag
     2221 cgcgacggcc tcgttccgga agttctcgac gagcgtgcgc tcaagctccg ggtccggcac
     2281 gccctgtaag tgcgtgttga gcgccttgat gacgacggtg cgcggctcgc cctgctgcgc
     2341 cgcctcgtcg cgcgccacat agacctccga gtagctgccg cggccgaggc agtcgagcac
     2401 gtcgtagcgg ccgtcgagcc tgcactgttg gagcttcagt tcactcatct ca
//
LOCUS       DASPKR010000188        12587 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1188483, whole genome shotgun sequence.
ACCESSION   DASPKR010000188 DASPKR010000000
VERSION     DASPKR010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12587)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12587
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1188483"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..355)
                     /locus_tag="VD968_05165"
     CDS             complement(<1..355)
                     /locus_tag="VD968_05165"
                     /inference="COORDINATES: protein motif:HMM:NF013384.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-eliminating lyase-related protein"
                     /protein_id="HYE13815.1"
                     /translation="MASANAAGHVVAYGDDPFTEEAKRKFRALFGNSAEVFFVFGGTG
                     ANALALQAMTRPHEAVVCAATAHINVDECGAPEKFTGCKLLDVPTPDGKLTPALVEPL
                     LGRVGDQHHVQPRVVS"
     gene            complement(282..2126)
                     /locus_tag="VD968_05170"
     CDS             complement(282..2126)
                     /locus_tag="VD968_05170"
                     /inference="COORDINATES: protein motif:HMM:NF013377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004555 - alpha,alpha-trehalase activity
                     [Evidence IEA];
                     GO_process: GO:0005991 - trehalose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalase family glycosidase"
                     /protein_id="HYE13816.1"
                     /translation="MPRLSKRLGAAAASLAVVLLAAWLAPAAAAQGRATPEQLEAARA
                     YIRRSWRTLSRSNRDLAAAAVDPKFDRPVPNPPPGPQPPRRWPVYVSSKEDLSKVEAS
                     LRAQMPPGDFERISLRQLPAGDGTFADDRGRDLVNLEPGLLYLPRPYVVPGGRFNEMY
                     GWDSYFIQVGLLRDGETRLARDMVENFLYEVEHYGKILNANRTYYLGRSQPPFLTRMI
                     LGVYEKEKDNAWLRRALPAVESYYRYWTTGDHLTVETGLSRYYEFGTSPAPEVIADER
                     DSQGRTHYDRVKEFYRAHEVTDYDVSRFYQRSSDLLTPAFYIGDRSMRESGFDPSNRF
                     GPFSVDITSYNPVCLNSLLYVMERDAARITRELGLGREAREWERRARLRAERVKRLMW
                     DERDGLFYDYDFRRKQVRRYPFVTTFYPLWAGIATPRQAARVVSNLRLFERPGGLRTS
                     TNVSGSQWDAPFGWAPMQLIAVEGLRRYGFDKEADRVSVNFLSLVLKEFVEHNVIVEK
                     YDVERRDSQLGAGLRFGYTSNEIGFGWTNAAFTELYARLPAGERPKVLEAGGLPAPPL
                     DRHETEEGICERQQRGRAPARDGGRGVRERRRPRRRVRRRPVHGGGQT"
     gene            complement(2152..2430)
                     /locus_tag="VD968_05175"
     CDS             complement(2152..2430)
                     /locus_tag="VD968_05175"
                     /inference="COORDINATES: protein motif:HMM:TIGR02605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HYE13817.1"
                     /translation="MKIYPTEIVRTECERAMPIFEYACRECGHRFEKIVQGGKKPACP
                     ECGGRSLEKQLSVFAASTKTAGAPARRYAPGPCGSCGDPRGPGSCSMN"
     gene            complement(2473..4155)
                     /locus_tag="VD968_05180"
     CDS             complement(2473..4155)
                     /locus_tag="VD968_05180"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0043138 - 3'-5' DNA helicase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HYE13818.1"
                     /translation="MGVTKELPKLRRVMREVFGYKNLRDGQEEVIRSVLSGRDTLAVM
                     PTGAGKSLCYQLPALHLPGTTVIVSPLISLMKDQVDKLAGAGVASAQVNSALTESERR
                     ENLEDIEEGSSPLVFTTPERFTDPAFLETLRGKELDFVVVDEAHCVSQWGHDFRPAYL
                     ALGSAVEALGSPPVLALTATATPEVVEDIRKHLHLRDMRVINTGVYRPSLRYEVVRVT
                     NEREKREQLARLLRETAGQGIVYCATVKAVESLVEFFRGSDLELRPYHGRLPASERRE
                     NQDAFMAGRMKAMVATNAFGMGIDKPDIRFVIHYQMPGSLEAYYQESGRAGRDGGDAL
                     CSLLYMLDDRRTQLFFMGGRYPKADDIAAVYLALERLGAAGSAVSLEDVREAAEGVAE
                     GKARVALSMLKEAGVVGETRGVRFRLLRAGLGGERLARLARECDERGERDRAKLERMM
                     LYGQSAECRWKLLHEYFGEPFEQGRCGRCDNCRQPLEEKLGLPRVEDKKAAAPTAAPQ
                     VKAKEVAFSEGDAVKLRKHGRGRVTSVEGDKISVRFPDGETRTFKREFVKKG"
     gene            4363..4527
                     /locus_tag="VD968_05185"
     CDS             4363..4527
                     /locus_tag="VD968_05185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13819.1"
                     /translation="MADRDKVGEGGGSGKGSGGGQAGGGREGSSGGASKGGGQKGGGQ
                     QGGQGGSRKR"
     gene            4546..4878
                     /locus_tag="VD968_05190"
     CDS             4546..4878
                     /locus_tag="VD968_05190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13820.1"
                     /translation="MQEDRFVKAKRAAGGAAADAGWSPGVGPILGIALCALLLLGAII
                     LGVTTGLGVLFAVPLGLLAIVVALVLLRGGRRAASGLCPHCRARIDFPSHLSEFNCPA
                     CGGRVETR"
     gene            4928..5110
                     /locus_tag="VD968_05195"
     CDS             4928..5110
                     /locus_tag="VD968_05195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13821.1"
                     /translation="MSADSAGKNQGDSGHVGGTRQKGGQGERGQSGSKSEGSGSTNKG
                     EGSGKKSGTPGGERHH"
     gene            5122..5373
                     /locus_tag="VD968_05200"
     CDS             5122..5373
                     /locus_tag="VD968_05200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13822.1"
                     /translation="MSDESRQGVGDEGIGEGNLQGERGAPPYADRAYAGEQEPTGGQG
                     PTQAGTAGGTNVSAQGGGTGSSKQGGNTSGAGAEGSSSK"
     gene            complement(5378..7054)
                     /locus_tag="VD968_05205"
     CDS             complement(5378..7054)
                     /locus_tag="VD968_05205"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYE13823.1"
                     /translation="MTFKQEPPQLGNQYADDRALRSCLRRALPGEVLEEIEPELYELG
                     ELAGGELYRMQLADRTSEPRLVQWDAWGQRVDRVEVTPLWRVAERQAAERGLVAVAYE
                     RRHGPHSRLHQAALAYLFTPSTDIYSCPLAMTDGAARTLINSGNSELSARVVPRLVSR
                     DPEEFWTSGQWMTEAAGGSDVGLAETVARREPWGGWSLHGRKWFASAPNAQVALTLAR
                     PEGNDPGGRGLALFLVETRDSAGRLCGITIDRLKDKLGTRKVPTAELTLDGTPAEPVS
                     GTTDGVRAIAPMLNVTRLWNGLSAAALMRRGLALARDYSRRRVAFGGPLSRKALHADT
                     LACLQAEAESALHLAFFTAGLVGLEESGEAGERRQLLLRLLTPLMKLTTARQAVAAAS
                     ETLEAFGGAGYVEDTGLPVILRDAQVLSIWEGTTNVLALDALRALQKGRDALAALNEE
                     AEACAQSARDPRLERAASVALAALEHAAAWLAGAARRGEPATEAGARRFALTLGRAFA
                     LALMIRHAQWSLDEEGSVRALACAARFAHSGIDLIADADLDAAFALATET"
     gene            complement(7051..8166)
                     /locus_tag="VD968_05210"
     CDS             complement(7051..8166)
                     /locus_tag="VD968_05210"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYE13824.1"
                     /translation="MTAAGAGRASGSEYMVWAKTRSQARYNLASSGLMNYPLAGLPVA
                     LEDLEISGPSWYGYEPLQKALAAKCGAPEECVVAATGTSMANHLVMAAALSPGDEALI
                     ESPAYDPLVAVACYLGAEVRRFERRFEDNFAVNAEEIARLLTPRTRLVVLTNLHNPSG
                     ALATVEALKAVGEAAREVGALVLVDEVYLDAMFDEAPPTAFTLGSHFVVTNSLTKVYG
                     LSGLRCGWAVAEASFAERLWRLNDLFGVIPAHPAERLSLVALANLPAIAARSRALLEE
                     NAAVLNSFLRSRDDLEYLEHRHGTVSFPRLKNATARELCALLADRYETSVVPGDFFQM
                     PEHIRIGVGCDAATLREGLARLGAALDEFRARRRGDG"
     gene            complement(8163..9512)
                     /locus_tag="VD968_05215"
     CDS             complement(8163..9512)
                     /locus_tag="VD968_05215"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYE13825.1"
                     /translation="MKPTNENRKDERLARRLGLFDATMIVMGGIVGAGIFINPHVVAG
                     QVRTPALILGAWLAGGAIALAGAFVYAELAARRPEVGGQYAYLRDAYHPSVAFLYGWA
                     LLLVMQTGGMAAVAITFARYFIELTRAPLSEWAVAALALGALTVVNCLGVRAGSGVQS
                     ALMVLKILAVAALVACGLLFVAEPRGEVGPVLDRPVSLGLLAAVGAALTPVMFAYGGW
                     QTASFVAGELREPRRDLARGLLLGVSGVVVLYTAVNFVCLYVLGAAGLAETKTPASAV
                     MRAALGERGAALIAVGIAVSTLGFLSQGMLTAPRVYYAMAADGLFFKTVGRVSERTRA
                     PVVAIALQGMLAAVIAVSGRYEQILNYVVSVDFIWFGLTAGAVFVFRRREGRSGDGAG
                     GFRVPGHPATTAFFVGACAFVVAGTIYEHPENSAVGLVILAAGVPAYLFWRGGRSLR"
     gene            complement(9659..10858)
                     /locus_tag="VD968_05220"
     CDS             complement(9659..10858)
                     /locus_tag="VD968_05220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13826.1"
                     /translation="MRSLVKFCGAAAAALVLALAPAPAREARARAVTPGQVVISEFRF
                     RGPAGSCDEFVELYNNSVERVVVQSTDGSAGWTIASLDAVGPGEPTVYNDAIMIPNGT
                     VIPPHGHYLATCVQLDEANTNRYSLGAYAGPDKKYTLEFNDATGIALFTTQNFSNFNA
                     STRLDAVGFPGADPLFREGAGLAPAEGITVDVEHSFVRALSGGSPKDTGDNASDFVLV
                     APDPRLIANALAVLGAPGPESTLSPRQHNADIHVELLNPSQPATSSPNRVRNTTPVEN
                     GRQGTVSLQRRVTNLTGKPLTRLRFRVVDITTQNSPVVYSQQADVRVLSSTGVVTRTD
                     GSTVVTVRGLTLEQPPNQPKGGGLNSTLNLPVKGLPHGASVDVQFLLGVQQGGSFNFA
                     VQVEALP"
     gene            11061..12311
                     /locus_tag="VD968_05225"
     CDS             11061..12311
                     /locus_tag="VD968_05225"
                     /inference="COORDINATES: protein motif:HMM:TIGR01976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase-like protein"
                     /protein_id="HYE13827.1"
                     /translation="MNDSERTTAAGPATVAEIRAQFPALGRAHGGRPVAYFDGPGGTQ
                     VPRRVVEAVAEYLYRHNANTHWAYPTSEETDALLESAREAMGDFLNASPAEVVFGANA
                     TTLAFHLSRTLGRTFGPGDEIVVTELDHHANVAPWQALERERGVCVRVVRMEGESGRL
                     DWEDFEGKVNERTKLVAVGAASNALGAITDLGRAARAARSVGAYLFVDAVHSAPHILT
                     DVRAMGCDFLVCSAYKFYGPHVGAMFCREEFLRSLPFPKLQPAPEAGPERAETGTQNH
                     EGICGAAAAVDFLASLAPGDTRRARLAAAFDALHERAAAQVRLMWEGLSGIEGVKLYG
                     PAPGRPRTPTVAFTVGGVASTEVARRLAARGLFVSHGDFYAATVVERLGLGEEGLVRA
                     GCACYTTDEEVERLVEGVREIARA"
     gene            complement(12326..>12587)
                     /locus_tag="VD968_05230"
     CDS             complement(12326..>12587)
                     /locus_tag="VD968_05230"
                     /inference="COORDINATES: protein motif:HMM:NF012945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13828.1"
                     /translation="REAAAGGRPFRLVARARRAEGGAVEARVRPEQVAPPDPFSTAYG
                     TSLVVTFELDVLPGLTVIAHRPDLQSTAYGLLADFINIARGR"
BASE COUNT         1942 a         4251 c         4523 g         1871 t
ORIGIN      
        1 cggagacgac gcgcggctgc acgtggtgct ggtcgcccac gcgcccgagc agcggctcga
       61 caagcgcggg cgtgagcttg ccgtcgggcg tcggaacgtc gaggagcttg cagcccgtga
      121 acttctctgg cgcgccgcac tcatcaacgt ttatgtgcgc ggtcgcggcg cacacgacgg
      181 cctcgtgcgg ccgagtcatg gcttggaggg cgagggcgtt tgcgcccgtc ccgccgaaga
      241 cgaaaaagac ctcggccgag ttgccgaaga gagcgcggaa cttacgtttg gcctcctccg
      301 tgaacgggtc gtcgccgtac gcgacgacgt ggccggcggc gttcgcggac gccacggcct
      361 ccatcacgcg cgggtgcgcg cccgcgttgt tgtcgctcgc aaatcccctc ttcggtctca
      421 tggcgatcta gcgggggggc gggcaggccg cccgcctcca agaccttcgg cctctcgcct
      481 gcgggcaggc gcgcgtaaag ctccgtgaag gccgcgttcg tccagccgaa gcctatctcg
      541 ttcgacgtgt agccgaaccg caggccggcg ccgagctgcg agtcgcgccg ctccacgtcg
      601 tacttctcga cgatgacgtt gtgctcgacg aactccttga gaaccagcga gaggaagttg
      661 accgagacgc ggtctgcctc tttgtcgaag ccgtagcggc gcaggccctc gaccgcgatg
      721 agctgcatcg gcgcccagcc gaagggcgcg tcccactggc tgcccgagac gttggtgctc
      781 gtccgcaagc cgccggggcg ctcgaagagg cgtaggttcg agacaacgcg cgcggcctgc
      841 cgcggcgtgg cgatgccagc ccagagcggg tagaaggtcg tgacgaaggg gtagcgcctg
      901 acctgcttcc ggcggaagtc gtagtcgtag aagaggccgt cgcgctcgtc ccacatcagg
      961 cgcttgacgc gctcggcgcg cagtcgcgcg cgccgctccc actcacgcgc ctcgcgcccc
     1021 agcccgagct cgcgcgtgat gcgggcggcg tcgcgctcca tcacgtagag gagcgagttg
     1081 aggcagacgg ggttgtagct ggtgatgtca acgctgaagg ggccgaagcg gttcgacggg
     1141 tcgaagccgg actctcgcat cgagcggtcg ccgatgtaga aggcgggcgt gagcaggtcg
     1201 gacgagcgct ggtaaaagcg gctcacgtcg tagtctgtga cttcgtgcgc gcggtagaac
     1261 tcctttacgc ggtcgtaatg cgtgcgcccc tgcgagtcgc gctcgtcggc gatgacttcg
     1321 ggcgcgggcg aggtgccgaa ctcgtagtag cgcgagaggc ccgtctccac ggtcaggtgg
     1381 tcgcccgtcg tccagtagcg gtagtagctc tcgacggccg gcagcgcccg ccgcagccag
     1441 gcattgtcct tctccttctc atagacgccg aggatcatgc gcgtcaggaa gggcggctgc
     1501 gagcggccga ggtagtaagt ccggttggcg ttgaggattt tgccgtagtg ctcgacttca
     1561 tacaggaagt tctcgaccat gtcgcgcgcc agtcttgtct cgccgtcgcg cagtaggccg
     1621 acctgtatga agtagctgtc ccagccatac atctcgttga agcggccgcc cggcacgacg
     1681 taggggcgcg gcaggtagag caggcccggc tccagattga cgaggtctcg cccgcggtcg
     1741 tccgcgaagg tgccgtcgcc cgcgggaagt tgccgcaagg atatgcgctc gaagtcgccg
     1801 ggcggcatct gcgcgcgcaa ggaagcctcg accttgctca aatcctcctt actcgaaaca
     1861 tagacgggcc agcggcgcgg tggctgcggg ccggggggcg ggttcgggac ggggcggtcg
     1921 aacttcgggt caacggccgc cgcggcgagg tcgcggttcg agcgcgagag cgtgcgccag
     1981 ctacggcgta tgtaagcgcg cgccgcctcc aactgctcgg gcgtggcgcg cccctgcgcc
     2041 gcggcggccg gcgcgagcca ggccgcgagc agtacgacgg cgagagacgc cgcggcggca
     2101 ccaagtcttt ttgaaaggcg cggcacgact cttcgggcgc gaaggagggg ttcagttcat
     2161 cgagcaggag ccggggccgc gcgggtcgcc gcacgagccg caggggccgg gcgcgtaccg
     2221 gcgcgcgggg gcgcctgccg tcttcgtcga ggcggcgaag acggagagct gcttctccag
     2281 gctccggccg ccgcactcgg ggcatgcggg tttcttcccg ccctggacta tcttctcgaa
     2341 gcggtggccg cactcgcggc aggcgtactc gaagatgggc atggctcgct cacactccgt
     2401 tcggacgatc tcggtcggat agattttcac ctccccgccc cgcgtgtcaa acgaagcgcg
     2461 cccgcgcgag cctcagccct ttttgacgaa ctcgcgcttg aaggtgcggg tttcgccgtc
     2521 ggggaatcgg acggagattt tgtcgccctc gaccgacgtg actcgaccgc gcccgtgctt
     2581 gcggagcttg acggcgtcac cctcggagaa ggcgacttcc ttcgccttca cttgcggcgc
     2641 ggcagttggg gcggcggcct ttttatcttc aaccctcggg aggccgagct tttcttcgag
     2701 gggctgccgg cagttgtcgc agcggccgca gcgcccctgc tcgaagggct ctccgaagta
     2761 ttcgtgcagg agcttccagc ggcactcggc gctctggccg tagagcatca tgcgctcgag
     2821 cttggcgcga tccctctcgc cccgctcgtc gcactcgcgc gccagccgcg cgagacgctc
     2881 gccgcccagg cccgccctga gcaggcggaa gcgcacgccc ctcgtctctc cgaccacccc
     2941 ggcctccttc agcatcgaga gcgccacgcg cgccttccct tcggccactc cctcggcggc
     3001 ctcgcgcacg tcctccagag agacggccga gcccgcggcg cccagccgct cgagcgccag
     3061 atagacggcg gcgatgtcgt cggccttcgg gtatcggccg cccatgaaga agagctgcgt
     3121 gcggcggtcg tcgagcatgt agaggagcga gcagagcgcg tcgccgccgt cccttccggc
     3181 gcggcccgac tcctggtagt aggcttcgag cgagccgggc atctggtagt ggatgacgaa
     3241 gcgtatgtcg ggcttgtcaa tccccatccc gaaggcgttc gtcgccacca tcgccttcat
     3301 ccgcccggcc atgaaggcgt cctgattctc gcgccgctcc gaggccggga gcctgccgtg
     3361 ataaggccga agctcgaggt ctgagccgcg gaagaactcg accaacgact cgaccgcctt
     3421 gacggtcgcg caatagacga tgccctgccc cgcggtctcg cgcagcaggc gcgcgagctg
     3481 ctcgcgcttc tcccgctcgt tcgtcacgcg cacgacctcg tagcgcaggc tcgggcgata
     3541 gacgcccgtg ttgatgacgc gcatgtcgcg caagtgcagg tgcttgcgta tgtcctcgac
     3601 cacttcgggc gtggccgtcg ccgtgagcgc gaggacgggc ggcgagccga gcgcctcgac
     3661 ggcagagccg agcgcgaggt aggcgggccg gaagtcgtgg ccccactgcg agacgcagtg
     3721 cgcctcgtca accacgacga aatcaagctc cttgccgcgc agggtttcga ggaaggcggg
     3781 gtctgtgaag cgctcgggcg tggtgaagac gagggggctg ctgccctcct ctatgtcctc
     3841 gaggttctcg cgccgctcgc tctccgtgag cgcgctgttg acctgcgcgg acgcgacgcc
     3901 cgcgccggca agcttgtcaa cctgatcctt catcagcgag atgagcggcg agacgatgac
     3961 ggtcgtcccc ggcaggtgca gcgccgggag ctggtagcag agcgacttgc ccgcgcccgt
     4021 cggcatgacg gcgagggtgt cgcggcccga gagcacagag cgtatgacct cctcctgccc
     4081 gtccctcaag ttcttgtagc cgaacacctc gcgcatcacg cgccgcagct tcggcagctc
     4141 tttagtcacg cccataagga ttctgcgaac gccctccgtc gggtaaagct tcggcggatt
     4201 gtgccggccc gttgtctcgg aagtgtggca ccggcgttgc tcttcatacg ggcgccgggg
     4261 aaagaatcgc ggaagcagcg gcctcgcgtc gcgcgggccg tactgtttcg gctgcgcggt
     4321 tgtcctctta gtggacaaat caaagcgggg aggtgtcagg ccgtggcgga tagagacaag
     4381 gtcggcgaag gcggcggcag cggcaagggc tcgggcggag gccaggccgg cggcgggcgc
     4441 gagggcagca gcggcggcgc cagcaaaggc gggggccaga agggcggcgg ccaacagggc
     4501 gggcagggcg gcagccgcaa acgctgaagg gaggtgcgcg cacccatgca ggaagacaga
     4561 ttcgtaaagg cgaagcgtgc cgcgggcggc gcggcggccg acgcgggttg gagccccggc
     4621 gtggggccga tactcggcat cgcgctctgc gccctccttc tgctcggggc gataatcctg
     4681 ggcgtgacga cgggcttggg ggtgctcttc gcggtgccgc tcgggctgct ggcgatagtc
     4741 gtggcgctgg tgttgctccg cggcggcagg cgcgctgcct cgggcctatg cccgcactgc
     4801 cgcgcgcgca tagacttccc ttcgcacctg tcggagttca actgccccgc gtgcggcggc
     4861 agggtcgaga cgcgctgagc acggcgcgcg gcagtcttct tattttcagc ttggagggct
     4921 tagagagatg agcgctgaca gcgcgggcaa gaaccagggc gacagcggcc acgtcggcgg
     4981 cacgcgccag aagggcgggc agggcgagcg agggcagtcc ggctcgaaga gcgagggctc
     5041 gggcagcacc aacaagggcg aaggcagcgg caagaagagc ggcacgcccg gcggcgagcg
     5101 ccaccactga aagggacgag tatgtcggac gagagcaggc agggcgtcgg cgacgagggg
     5161 ataggcgaag gcaaccttca gggcgagcgc ggcgcgccgc cttacgccga ccgcgcctac
     5221 gcgggcgagc aggagcccac gggcggtcag gggccgaccc aggcagggac ggccggaggc
     5281 acgaacgtct cggcgcaggg cggcggcacc ggcagcagca agcagggcgg caacacttcg
     5341 ggcgccggcg ccgagggctc aagctctaaa taattaatca agtctcggtg gcgagggcga
     5401 aggccgcgtc gaggtctgcg tcggcgatga ggtctatgcc ggagtgtgcg aagcgcgcag
     5461 cgcacgcgag cgcgcggacg ctcccctcct cgtccagcga ccactgcgcg tgccgaatca
     5521 tgagcgccag cgcgaaggcg cggccgagcg tgagcgcgaa gcggcgcgcg cctgcttccg
     5581 tcgccggctc gcctcggcgg gcggcgcccg cgagccacgc cgcggcgtgc tcgagcgcgg
     5641 cgagcgccac ggaagccgcc ctctcaaggc gggggtcgcg cgccgattgg gcgcaagctt
     5701 cggcctcctc gttgagcgcg gcgagcgcgt cgcggccctt ctgaagcgcg cgcagcgcgt
     5761 cgagcgccag cacgttcgtc gtcccttccc agattgagag cacctgcgcg tcgcgcaaga
     5821 tgacgggcag ccccgtgtcc tccacgtagc ccgccccgcc gaaggcttcc agagtctcgc
     5881 tcgccgccgc gacggcctgc ctcgccgtcg tcagcttcat caacggcgtg agcagccgca
     5941 ggagcaactg tcgccgctcg cccgcctcgc ccgactcttc cagccccacg agcccggccg
     6001 tgaagaatgc gaggtggagc gccgattcgg cctcggcctg aaggcacgcg agcgtgtcgg
     6061 cgtgaagggc cttgcgcgag agcggcccgc cgaaggcgac ccggcggcgg gagtagtcgc
     6121 gcgccagcgc gagcccccgg cgcatgagcg ccgccgcgct caggccgttc cacagccgcg
     6181 tcacgttgag catcggcgcg atggcgcgca cgccgtccgt cgtccccgac acaggctcgg
     6241 cgggcgtgcc gtcgagcgta agctcggccg tcggcacctt gcgagtcccg agcttgtcct
     6301 tgaggcggtc aatggtaatg ccgcacagcc gccccgccga gtcgcgcgtc tcgaccagga
     6361 agagcgcgag gccgcgcccg cccggatcgt tcccctcggg ccgcgcgagc gtgagcgcca
     6421 cctgcgcgtt cggcgccgac gcgaaccact tccttccgtg caggctccac cccccccacg
     6481 gctcgcgcct cgcgaccgtc tctgcgaggc caacgtcgga gccgcccgcc gcctccgtca
     6541 tccactggcc gctcgtccag aactcttcgg ggtcgcgcga aacgagccgc ggcacgacgc
     6601 gcgcggagag ctccgagttg ccggagttaa taagcgtgcg cgccgccccg tccgtcatgg
     6661 cgagcgggca actgtagatg tccgtcgagg gcgtgaagag gtacgcgagc gccgcctggt
     6721 gcaggcgcga gtgcggcccg tgcctgcgct cgtaggcgac ggcgaccagg ccgcgctcgg
     6781 cggcctggcg ctcggccacg cgccagagcg gcgtgacctc cacgcggtca acgcgctgcc
     6841 cccaggcgtc ccactgcacc aggcgcggct cgctcgtgcg gtcggccaac tgcatgcggt
     6901 agagctcgcc gccggccagc tcgcccaact cgtaaagctc gggctcgatc tcttcgagca
     6961 cctcgccggg cagcgcgcgc cgcaggcagg agcgcagcgc gcggtcgtcc gcgtactggt
     7021 tgccgagctg cggcggctcc tgtttgaaag tcatccgtcc cccctccggc gcgcgcggaa
     7081 ctcgtcgagc gccgcgccga ggcgcgccag cccctccctt agcgtcgccg cgtcgcagcc
     7141 gacgccgatt ctgatgtgct cgggcatctg gaagaagtcg cccggcacta ccgaggtctc
     7201 gtagcggtcg gcgagaaggg cgcacagctc gcgcgccgtc gcgttcttga ggcgcgggaa
     7261 ggagaccgtg ccgtgccggt gctctaagta ttctaggtcg tcgcgcgagc gcaggaagga
     7321 gttgagcacg gccgcgttct cttcgagcag ggcgcgcgag cgcgctgcga ttgcggggag
     7381 gttcgcgagc gcgacgaggc tcagccgctc ggccgggtgc gcgggtatga ctccgaaaag
     7441 gtcgtttaag cgccagagcc tctcggcgaa agaggcttcg gccaccgccc acccgcaccg
     7501 cagcccgctc aggccgtaaa ctttcgtcag actgttagtg acgacgaagt gactgcccag
     7561 cgtgaaggcg gtcggcggcg cttcgtcgaa catcgcgtcc aaatagactt cgtccaccag
     7621 cacgagcgcg ccgacttcgc gcgccgcctc gccgactgcc ttgagcgcct ctacagtcgc
     7681 tagcgcgccc gaagggttgt gaagattagt cagcacgacg agccgcgtgc gcggcgtcag
     7741 gagacgtgcg atctcttcgg cgttgacggc gaagttgtct tcaaagcggc gctcgaacct
     7801 tctgacctcg gcgccgaggt agcaggcgac ggcgacgagc gggtcgtagg ccgggctctc
     7861 tatcaacgcc tcgtcgccgg gcgagagcgc cgcggccatg acgaggtggt tcgccatcga
     7921 agtccccgtc gccgcgacga cgcactcctc gggcgcgccg cacttcgcgg ccagcgcctt
     7981 ttgcagcggc tcgtagccgt accagctcgg cccgctaatc tctaagtctt cgagcgcgac
     8041 gggcagcccc gcgagcgggt agttcatgag cccgctcgaa gcgaggttgt agcgcgcctg
     8101 cgagcgcgtc ttcgcccaga ccatgtactc ggagcccgac gcgcgccccg cccccgcagc
     8161 ggtcatcgaa gcgacctccc gccccgccag aaaaggtagg cggggactcc cgccgcgagt
     8221 atgacgagcc cgacggcgct gttctccggg tgctcgtaaa tcgtgccggc cacgacgaag
     8281 gcgcacgcgc cgacgaagaa agcggtcgtc gcggggtggc ccggaacgcg aaagcctccc
     8341 gcgccgtctc cgcttcgccc ttcgcggcgg cggaagacga aaacggcgcc ggccgtcaac
     8401 ccgaaccata tgaagtcaac cgagacgacg tagttgagaa tctgctcgta gcggcccgag
     8461 acggcgatga cggcggcgag catgccttgc agcgcgattg cgacgacggg cgcgcgcgtc
     8521 cgctccgaga cgcggcccac ggtcttgaag aagaggccgt cggccgccat ggcgtaatag
     8581 acgcgcggcg ccgtgagcat accttgactg aggaacccga gagtcgagac ggcgatgcct
     8641 acggcgatga gcgcagcgcc gcgctcgccc agagccgcgc gcatcacggc cgaggcgggc
     8701 gttttcgtct ccgcgagccc cgccgcgccg agcacgtaga ggcagacgaa attgacggcc
     8761 gtgtagagca cgacgacgcc cgagacgccg agcagcagcc cgcgcgcgag gtcgcgccgc
     8821 ggctcgcgca gctcgcccgc cacgaagctc gccgtctgcc agccgccgta cgcgaacatg
     8881 acgggcgtga gcgccgcacc gactgccgcc aaaaggccca acgacacggg ccggtctagc
     8941 acggggccga cttcgccgcg cggctcagcg acgaacagca gcccgcacgc cacgagcgcg
     9001 gcgacggcga gaatcttcaa gaccatgagc gcgctctgca caccgctccc cgcgcgcacg
     9061 cccaggcagt tgacgaccgt gagcgcgccg agcgcgagcg ccgccacggc ccattcgctc
     9121 aacggcgcgc gcgtgagttc aatgaagtag cgcgcgaacg tgatggcgac ggccgccatc
     9181 ccgcccgtct gcatcacgag cagcagcgcc caaccgtaga ggaaagcgac cgaagggtgg
     9241 taggcgtccc ggaggtatgc gtattggccc ccgacctcgg ggcgccgcgc cgcaagctcc
     9301 gcatagacga aagcgccggc gagcgcaatc gccccgcccg cgagccacgc gccgagtatg
     9361 agcgcgggcg tgcgcacctg cccggccacg acgtgcgggt ttatgaagat gcccgccccg
     9421 acgatgccgc ccatcacgat catcgtcgcg tcgaagaggc cgagccgccg cgccagcctt
     9481 tcgtccttac ggttttcgtt cgtgggcttc aaatcctgaa gtctgatgtc gcgagagcct
     9541 gcgtcgtgcc ggtcgcgtga gatagtaacg ccgaacccct gcgggggaaa gagggagaaa
     9601 agaagaagcc ccggccgccg caacggccgg ggcttcttct gactcctgtc ttcctccctt
     9661 acggcaacgc ctcgacctgg acggcgaagt tgaaggagcc gccctgctgg actccgagga
     9721 ggaattgcac gtcaacgctc gcgccgtgag ggagcccctt gacggggagg ttgagcgtgg
     9781 agttcaggcc gccgcccttc ggctggttag gcggctgttc gagcgtaagg ccgcgcaccg
     9841 tgacgaccgt gctgccgtcc gtgcgcgtga cgacgcccgt cgagctcaag acgcgcacgt
     9901 cggcctgctg gctgtaaacg acggggctgt tctgcgtcgt gatgtccacg acgcggaagc
     9961 gcaggcgcgt gagcggcttg cccgtgaggt tcgtgacgcg ccgctgcagg ctgacggttc
    10021 cctgcctgcc gttctcgacg ggcgtggtgt tgcgcacgcg gttgggcgag gaggtcgcgg
    10081 gctggctcgg gttgagcagc tcgacatgta tgtcggcgtt gtgctgcctg gggctcagcg
    10141 tgctctcggg gccgggcgcg cccagcacgg ccagcgcgtt cgcgatcagc cgcgggtccg
    10201 gggcgaccag cacgaagtca gaggcgttgt cgcccgtatc cttcggcgag ccgcccgaga
    10261 gggcacgcac gaagctgtgc tcgacatcca ccgttatccc ttccgcgggc gccaggcccg
    10321 cgccctcgcg gaagaggggg tctgcgccgg ggaagcccac ggcgtcgagc cgggtcgagg
    10381 cgttgaagtt cgagaagttc tgggtcgtga agagcgctat gccagtggcg tcgttgaact
    10441 ccagcgtgta ttttttgtcg gggccggcgt aggcgcctag gctgtagcgg ttcgtgttgg
    10501 cctcgtcgag ctgcacgcaa gtcgcgaggt agtggccgtg cggcgggatg accgtgccgt
    10561 tgggtatcat tatggcgtcg ttatagacgg tgggctcgcc ggggccgacc gcgtcgagcg
    10621 aggcgatggt ccagccggcc gagccgtccg tgctctgcac gacgacgcgc tcgacggagt
    10681 tgttgtagag ctcgacgaac tcgtcgcagg agccggccgg gccgcggaag cggaactcgc
    10741 tgatgacgac ctggccgggc gtgacggccc gcgcccgagc ctcgcgcgcg ggggcggggg
    10801 ccagtgcgag gactaaggcg gcggctgcgg cgccgcagaa ttttacgagg gagcgcatca
    10861 gggtctcctt agattttatg gctaaagggc gaactacaac ggcgtgaaga cgatggagct
    10921 cgcgctatat aacagtccgg cggggagcca gcgaaataca ccgggagcca gatttaaaca
    10981 ccccggagtg agtcgagtta agactcccga ggggcgcccg cggttgcccg ccgttcccgt
    11041 cttttcttga ataatcgctt atgaatgaca gcgaacgaac gaccgcggcc ggccccgcga
    11101 cggtcgcaga gataagggct cagttccccg ctctggggcg cgcgcacggg ggccgccccg
    11161 ttgcctactt cgacggcccc ggcgggacgc aggttccccg gcgcgtcgtc gaggccgtcg
    11221 ccgaatacct ctaccgccac aacgccaaca cgcactgggc ctacccgacg agcgaggaga
    11281 cggacgcgct ccttgagtcg gcgcgcgagg cgatgggcga cttcctgaac gcctcgccgg
    11341 cggaggtcgt cttcggggcg aacgcgacga cgctggcctt ccacctgtcg cgcactctgg
    11401 ggcgcacgtt cgggcctggc gacgagatag tcgtgacgga gttggatcac cacgccaacg
    11461 tcgccccgtg gcaggccctc gaacgcgagc gcggcgtctg cgtgcgcgtc gtgcgcatgg
    11521 aaggcgagtc cggcaggctc gattgggaag atttcgaggg gaaggttaac gagaggacta
    11581 agctcgtcgc cgtcggggcc gcgtcgaacg cgctgggggc gataactgac ctcgggcgcg
    11641 cggcgcgggc ggcgcgctcc gtcggcgctt acctcttcgt ggacgctgtg cactcggccc
    11701 cgcacatcct gacggacgtg cgcgccatgg ggtgcgactt cctcgtatgc tcggcctaca
    11761 agttctacgg gccgcacgtc ggcgcgatgt tctgccgcga ggaattcctg cgctcgctcc
    11821 ccttcccgaa gctccagccc gcgcccgaag cggggcctga gcgcgccgag acggggacgc
    11881 agaaccacga agggatttgc ggggccgcgg ccgccgttga cttcctcgcc tcgctcgcgc
    11941 ccggcgatac gcgccgagcc cgtctcgccg ccgccttcga cgcgctgcac gagcgcgccg
    12001 ccgcgcaggt caggctcatg tgggaggggc tgtcaggcat cgagggcgtc aagctctacg
    12061 gcccggcgcc cggaaggccg cgcacgccga ccgtcgcctt cacggtaggc ggcgtggcct
    12121 cgacagaggt cgcgcgccgg ctggccgcgc gcggcctttt cgtctcgcac ggcgacttct
    12181 acgccgcgac ggtcgtcgag cggctcggcc tcggcgaaga gggcctcgtc cgcgccggct
    12241 gcgcctgcta cacgaccgac gaggaggtcg agcgtctcgt cgagggcgtg cgggagatcg
    12301 cgcgggcgta gggcgggcgc ccttttcatc tccctcgggc gatgttgatg aaatcggcga
    12361 gcaggccgta ggctgtgctt tgcaggtcgg ggcggtgcgc gatgacggtg aggccgggca
    12421 gcacgtcgag ctcaaaggtg acgacgaggg aggtgccgta ggcagtcgag aaggggtcgg
    12481 gcggcgcgac ctgttcgggg cgaacgcggg cctcgacggc gccgccctcg gcgcggcgcg
    12541 ccctcgcgac gaggcggaag gggcgccccc ccgcagcagc ctcacgc
//
LOCUS       DASPKR010000189         5525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_670562, whole genome shotgun sequence.
ACCESSION   DASPKR010000189 DASPKR010000000
VERSION     DASPKR010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5525)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5525
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_670562"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1977
                     /locus_tag="VD968_05235"
     CDS             <1..1977
                     /locus_tag="VD968_05235"
                     /inference="COORDINATES: protein motif:HMM:NF037959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HYE13829.1"
                     /translation="WLLASLALTVGPPFFVLSASAPLLQNWYSRTRARSAGDPYFLYA
                     ASNAGSLAALLGFPLLFEPALTLGRQGRLWAAGYFVLGALVVACAFASLAKGRRAAAG
                     EGVDAEGEVDEGAAGLTWRRRLRWVALAFVPSSLVLGATTYITTDVASVPLLWVLPLS
                     LYLLSFVIVFARRKVLRWQTAAAVLPGVAVLLVLIYLSGATEPAWFLILFHLLFLFVA
                     SVTCHGQLASDRPAPRHLPEFYLWLAVGGVLGGLFNALLAPALFNTVLEYPLVIVLAC
                     YLRPPTRPRKLNLLRLGAKGDDKEDESAAGGGEAVDERRLGAGDFLNPLALGALAGLL
                     AYVVPRLELGKVESIALTLGLPLFLLNHFFARRPLQFALAVASVMLASVLLSPSSGET
                     LLASRNFFGTLRVRHDAGRAMNVLLHGSTLHGRQSTDPARACEPLSYYHREGPLGSVF
                     RAFDARPPASTAVAVVGLGTGASAAYSRPGQSWTFYEIDPAVVRLAGGPGPFTYLDTC
                     AGARPVRIELGDARLRLRSAQPAGYGLIVLDAFSSDAVPAHLLTREALDLYLSKLAPG
                     GMIAFHTSNRALNLERVVGGNARDARLAARVLADPEHSAEIGKEPSEWVVVARSGEDL
                     AALNEDARWQPLDDRRLEVWRDDFSDIVGVFKWR"
     gene            2006..3964
                     /gene="selB"
                     /locus_tag="VD968_05240"
     CDS             2006..3964
                     /gene="selB"
                     /locus_tag="VD968_05240"
                     /inference="COORDINATES: protein motif:HMM:TIGR00475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HYE13830.1"
                     /translation="MKVSSHVTAFYLMRSVIVGTAGHIDHGKTALVRALTGVDADRLP
                     EEKRRGITIDLGFAELDLGGVRVGFVDVPGHERFVKNMLAGAHGIDLVALVIAADEGV
                     MPQTREHFDICKLLAVKSGLVILTKADIVDEELLALVRAEAEELVAGSFLGSAPVLAV
                     SARTGQGLDGLKAALRDAALAAPERSSDSVARLPVDRSFTMRGFGAVVTGTLVAGELA
                     EGQELELLPQGARVRVRGLQSHGAQVASARAGQRTAVNLGGVEAALVERGMVLAPSGR
                     LRPTQMMDARVEVLASAPRPLRSRQRVRLHHGTAEVLARVLVLEESGEIAPGGVGLAQ
                     LRLEAPVVALPTDRFIVRSYSPQRTVAGGEVLDAHAAKHRGRDRAAAREKLSALTGAD
                     RAARISFFVESAAERGQRRADLAARTGWRDDVLDAALAEAARSGSVVVAEGVAVAAEV
                     FSRLMREAAEAVEEHHRREPLSRGLARETLRERLFARAAPELFRAVLHRAESGGVLVS
                     ERELVRSAAHSLELPPADAALRDRLEEVYARAGLEAPTVEEAFALAAGGGAAADRDRL
                     RKLLKLLLDSGALVRVREDLLFHRDALARLVAALREHADSRAPDRLIDVAAFKELTGV
                     TRKYAIPLLEHLDRERVTRRAGDKRLIL"
     gene            4140..4358
                     /locus_tag="VD968_05245"
     CDS             4140..4358
                     /locus_tag="VD968_05245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13831.1"
                     /translation="MKSLLDIVLGIAGVAALGFAIWQFYLFAATNDPQGNTPHLWKAI
                     AGFVVLCVCALAIFLRHSGAEEEIHITQ"
     gene            4576..4929
                     /locus_tag="VD968_05250"
     CDS             4576..4929
                     /locus_tag="VD968_05250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13832.1"
                     /translation="MLTALTLWLAQVEPIRIPAYFPWVVLALLGVGALGWLIAAVLGF
                     TRARVFGASTRWFAVASVCLLLYHLQWLVFAVYGFNERNTENVLGLAAFFNLFVAAGA
                     VCAIVGFMRLTNPEP"
     gene            complement(4984..>5525)
                     /gene="hemB"
                     /locus_tag="VD968_05255"
     CDS             complement(4984..>5525)
                     /gene="hemB"
                     /locus_tag="VD968_05255"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF006762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HYE13833.1"
                     /translation="ELIARTAVSQAEAGADIVAPSAMMDGQVGAIRESLDGAGFEHVA
                     VMSYAVKYASAFYGPFREAADSAPSFGDRRAYQMDAANAREAMREAELDVMEGADFLM
                     VKPATPYLDILRMVRERFDLPLAAYHVSGEYAMIKAAAQRGWLDERRVMLETLTGIRR
                     AGADVIITYYAAEAARLLK"
BASE COUNT          730 a         1997 c         1888 g          910 t
ORIGIN      
        1 tggctgctcg cgagcctggc gctcacggtc gggccgccct tcttcgtcct gtcggcgagc
       61 gcgccgctgc ttcagaactg gtactcccgc acgcgcgccc gctcggccgg agacccgtac
      121 ttcctctacg cggcgagcaa cgccggcagc ctcgccgcgc tgctcggctt cccgctcctc
      181 ttcgagccgg cgctcacgct cggccggcag gggcgcctgt gggcggccgg ctattttgtg
      241 ctcggcgcgc tcgtggtcgc ctgcgccttc gcgtcgctcg cgaagggccg gcgcgcggcg
      301 gccggggagg gagttgacgc ggagggcgag gttgacgaag gggccgcggg gctcacgtgg
      361 cggaggcgcc tgcgctgggt ggcgctcgcc ttcgtgcctt cgagccttgt gctcggcgcg
      421 acgacttaca tcacgaccga cgttgcgtcg gtgccgctgc tgtgggtctt gccgctctcg
      481 ctctacctcc tgagcttcgt catcgtgttc gcgcgccgca aggtgctcag gtggcagacg
      541 gcggcggcgg tgctcccggg cgtggccgtg ctgctcgtgc tcatatacct ctcgggcgcg
      601 accgagcccg cgtggtttct gatcctcttc cacctgcttt tcctcttcgt cgcctcggtc
      661 acctgccacg gccagttggc ctccgaccgc cccgcgccgc gccacctccc cgagttctac
      721 ctgtggctcg cagtgggcgg agtgctcggc gggctcttca acgcgctgct cgcgcccgcc
      781 ctcttcaaca ccgtcctcga gtacccgctc gtcatcgtgc tcgcctgcta cctccgcccg
      841 cccacgcgcc cgcgcaagct caacctgctg cggctcggcg cgaagggtga cgacaaggag
      901 gatgagagcg cggccggcgg aggggaggcg gttgacgagc ggcgactcgg cgcgggcgac
      961 ttcctgaacc ctctggcgct gggcgcgctc gcagggctcc tcgcctacgt cgtgccgcga
     1021 ctggagctcg ggaaggtcga atcaatcgcg ctgacactcg gcctccccct cttcctcctc
     1081 aaccacttct tcgcgcggcg ccctctgcaa ttcgcgctcg cggtcgcctc cgtcatgctc
     1141 gcgagcgtgc tcctctcgcc gtcctcgggc gagacgctgc tcgcaagccg gaacttcttc
     1201 ggcacgctcc gcgtccggca cgacgccggg cgcgcgatga acgtgctgct gcacggcagc
     1261 actctgcacg gcaggcagtc aacagacccg gcgcgcgcct gcgagccgct ctcctactac
     1321 caccgcgagg ggccgctcgg ctccgtcttc cgagccttcg acgcgcgccc gcccgcctcc
     1381 acggccgtcg ccgtcgtcgg cctcggcacg ggcgcgagcg cagcctactc gcgccccggc
     1441 cagagctgga ctttctacga gatagacccg gccgtcgtgc gcctcgcggg cggccccggc
     1501 cccttcacct acctcgacac ctgcgccggg gcgcgacccg tccgcataga gctcggcgac
     1561 gcgcggctgc gactgcgctc ggcgcaaccc gcaggctacg gcctcatcgt cctcgacgcc
     1621 ttcagctccg acgccgtgcc tgcgcacctg ctcacgcgcg aggcgctcga cctgtacctg
     1681 tcgaagctcg cgccgggcgg gatgatcgcc ttccacacct cgaaccgcgc gctcaacctg
     1741 gagcgcgtcg tcggcggcaa cgcccgcgac gcgcgcctcg ccgcgcgagt cctcgcagac
     1801 ccggagcaca gcgccgagat cggcaaggag ccctccgagt gggtcgtcgt cgcgcgcagc
     1861 ggggaagacc tcgccgcgct gaacgaggac gcgcgctggc agccgctcga cgaccgccgc
     1921 ctcgaagtct ggcgcgacga cttctcggac atcgtcggcg tcttcaagtg gaggtgagcg
     1981 ggcggcggat gacaaggcag cgggtttgaa agtatcctca cacgtcaccg ctttttatct
     2041 catgcgctcc gtaatcgtag ggacggccgg gcacatagac cacgggaaga ccgcgctcgt
     2101 tagggctctg acgggcgtgg acgccgaccg cctgcccgag gagaagcggc gcgggataac
     2161 gattgacctc ggcttcgccg agctcgacct cggcggcgtg cgcgtcgggt tcgttgacgt
     2221 gccgggccac gagcgcttcg tcaagaacat gctcgcgggc gcgcacggca ttgacctagt
     2281 cgcgctcgtc atcgccgccg acgagggcgt gatgccgcag acgcgcgagc actttgacat
     2341 atgcaagctg ctcgcggtca agtccggcct cgtcatactc acgaaagctg acatcgttga
     2401 cgaagagctg ctcgccctgg tgcgcgcgga ggccgaggaa ctggtcgcag gttctttcct
     2461 cggctcggcg cccgtgctcg cggtgagcgc gcgcacgggt caggggctcg acgggctgaa
     2521 ggcggcgctt cgcgacgcgg cgctcgccgc gcccgagcgc tcgtccgact cggtcgcccg
     2581 cctgcccgtt gaccgctcgt tcaccatgcg cggcttcggc gcggtggtga cggggacgct
     2641 cgtcgcgggc gagcttgcgg aggggcagga gcttgagctt ctgccgcagg gcgcgcgcgt
     2701 gcgcgtgcgc ggcctgcaat cacacggcgc gcaggtcgcc tcggcgcgcg cggggcagag
     2761 gactgccgtg aatttgggcg gggtcgaggc ggcgctcgta gagcgcggga tggtgctcgc
     2821 gccgtcgggc cgtctgcggc cgacgcagat gatggacgcg cgcgtggaag ttttggcgag
     2881 cgcgccgcgc cccttgcgct cgcgccagcg cgtgcggctg caccacggga cggccgaagt
     2941 cctcgcgcgc gtgctcgtgc tcgaagagtc gggcgagata gcgccgggcg gagtggggct
     3001 cgcccaactt cggctcgaag cgcctgtcgt tgcactcccg actgaccgct tcatcgtgcg
     3061 ctcatactcg ccgcagagga ctgtggcggg cggggaagtc ctcgacgcgc acgccgccaa
     3121 gcaccgcggc cgcgaccgcg cggcggcgcg cgaaaagctc tcggcgctca cgggcgccga
     3181 ccgcgcggct cgcatcagtt tcttcgtcga gtcggccgcc gagcgcggcc agcgccgcgc
     3241 agacctcgca gcccgcacgg gctggcgcga cgacgtttta gacgccgcgc tcgccgaggc
     3301 cgcacgctcc ggctctgtcg tcgtcgccga gggcgtcgcg gtcgccgcgg aggttttcag
     3361 tcggctcatg cgcgaggcgg ccgaagcggt agaggagcac caccggcgcg agccgctctc
     3421 gcgcggcctc gcgcgcgaga ctctgcgcga gcgcctgttc gcgcgcgccg cgcccgagct
     3481 gttcagggcc gtgctgcacc gggccgaatc cggaggcgtg ctagtctccg agcgcgagct
     3541 ggtgcgctcg gccgcgcaca gcctggagct gcctccggcg gacgccgcgt tgcgcgacag
     3601 gctcgaagag gtttacgcgc gcgccgggct cgaagccccg accgtcgagg aggctttcgc
     3661 gctcgcggcc gggggcggcg ccgcggcaga ccgcgaccgt cttcgcaagc tcctgaagct
     3721 cctgctcgac tcgggcgcgc tcgttcgcgt gcgcgaagac ctcctcttcc accgcgacgc
     3781 gctcgcccgc ctcgtcgcgg cgctccgaga gcacgccgac tcgcgcgcgc ccgaccgcct
     3841 gatagacgtg gccgccttca aagaactgac gggcgtcacc cgcaagtacg cgataccgct
     3901 gctcgaacac ctcgaccgcg agcgcgtcac ccgccgcgcg ggcgacaaga ggctgattct
     3961 ttaagttttt cgggggctaa ccccttgctt ctagggcggg gcggcggtaa catatgcggc
     4021 gaactcaagc agtaaagttg tccgaaagct tctgaacccg gcagaattca tccgaaggcg
     4081 tccgcggctt tatcctaagc tgtgacttct tcaaccgaag ggcacgttgg aggttcaaaa
     4141 tgaagagcct gttggacatt gtgcttggca tcgccggtgt ggcggcgctc ggcttcgcca
     4201 tctggcagtt ctacctgttc gcggcgacga acgaccctca gggcaacacg ccgcacctgt
     4261 ggaaggccat cgccggcttc gtcgtcctct gcgtctgcgc gctcgccata ttcctgcggc
     4321 actcgggcgc cgaggaggag attcacatca cgcagtgacc cgaccgacgc cgccgcccga
     4381 ccgcagcgga gcgcggcggc gccgcggatt tgacttccga cgggggggca gcgcgggggc
     4441 tccctggccc gccatgcact ccgaaaactc gcaggcgtcg ttcgcgcttg ggcccgttag
     4501 ccgggggcgg acggcgcttt cgttttccga ggccggcccc tgttcagtaa aaacgacacg
     4561 tgagggactg accggatgct aacagcctta acgctctggc tcgcgcaggt ggagccgata
     4621 cgcatacccg catacttccc ctgggtcgtg ctcgccctgc tcggcgtcgg cgcgctcggc
     4681 tggctgatag cggccgtgct aggcttcacg cgcgcgcgcg tcttcggcgc ctcgacgcgc
     4741 tggttcgccg tcgcctccgt ctgcctgctc ctctaccacc tccagtggct cgtcttcgcc
     4801 gtctatggct tcaacgagag gaacacggag aacgtgctgg ggctcgccgc cttcttcaac
     4861 ctcttcgtcg ccgcgggcgc cgtctgcgcc atcgtcggct ttatgcgcct cacgaacccc
     4921 gagccataaa aaagtaagac gccgtcttct actcgtcgcc cttcgttcga cgcctgacgc
     4981 gggttacttc agcagccgcg ccgcctcggc agcgtagtag gtgattataa cgtcggcgcc
     5041 cgcgcggcgt atgcccgtca gcgtctccaa catcacgcgc cgctcgtcga gccagccgcg
     5101 ctgggccgcg gcctttatca tcgcgtactc gcctgagacg tggtaggcgg cgagcggaag
     5161 gtcgaagcgc tcgcgcacca ttcgcaggat gtcgaggtag ggcgtggccg gcttgaccat
     5221 gaggaagtcg gcgccctcca ttacgtccag ctcggcctcg cgcatagcct cgcgggcgtt
     5281 ggcggcgtcc atctggtacg cgcggcggtc gccgaaggag ggcgcgctgt cggccgcctc
     5341 gcggaacggg ccgtagaagg ccgaggcgta cttcacggcg taggacatca cggccacgtg
     5401 ctcgaagccc gcgccgtcga gcgactcgcg tatggcgccc acctgcccgt ccatcatggc
     5461 cgacggcgcg acgatgtcgg ccccggcttc ggcctggctc acggccgtgc gggcgatcag
     5521 ctcca
//
LOCUS       DASPKR010000190         3170 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1835326, whole genome shotgun sequence.
ACCESSION   DASPKR010000190 DASPKR010000000
VERSION     DASPKR010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3170)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3170
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1835326"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..430
                     /locus_tag="VD968_05260"
     CDS             <1..430
                     /locus_tag="VD968_05260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13834.1"
                     /translation="SQEERRAHMARLREEFLAEWDAEALERFFAEADAKAEPRARLSL
                     PWSATTEALPPDGGAVVRWAPPRPVEFKVEGGVVEFECIGRRWRFSEDALTVLRPLSE
                     RRVCTVAELCEGAQKRLAERTVRALLRDLLLNGLVAVVDA"
     gene            430..1335
                     /locus_tag="VD968_05265"
     CDS             430..1335
                     /locus_tag="VD968_05265"
                     /inference="COORDINATES: protein motif:HMM:NF018677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrase ferredoxin"
                     /protein_id="HYE13835.1"
                     /translation="MQQPFFCSQLSRGAGEKSFGTASVGAVWMLLEYAGAWGPRVLDD
                     CALAPEVKSFFRHTLASIPHSRLLFVKRGRAGGDTFSFFVVRCREREPFSVRFELDAY
                     ARLTDLDVAAAAAGETAAGGTLTREPVFLVCTHGRRDKCCAKFGTPVYHGLRGTEGGA
                     VWQSSHVGGDRFAANLVCFPHGLFYSHVSEESGARAAAEYRAGRLALEGYRGRACYAH
                     HIQAAEFFARAETGAVGLDALRFVRSRRTAERSWLVSFSGAGRTYEAAVSCRMSEFKN
                     FITCHSTEQKSVPQFSLDGFRTLDA"
     gene            1680..>3170
                     /locus_tag="VD968_05270"
     CDS             1680..>3170
                     /locus_tag="VD968_05270"
                     /inference="COORDINATES: protein motif:HMM:NF024810.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kelch repeat-containing protein"
                     /protein_id="HYE13836.1"
                     /translation="MPRPLAPSPSKNSCALKPFAVLALLVVACCAVVASAPFASQSAR
                     SQSKAGSGRTLSFSERVAYQRAVEEVYWRHTVWPKENTAFKPRLDEILPAEQTAARVE
                     ETLRKSDALARRWGRPVAPAQLQAEAERMARETKRPEVLRELWQALGNDPFIIAEVLA
                     RPALVDRLARTSFEAEQKAAGAEAPFDSWWAEAGDSFTADASAGAGFEYSLAEVREAA
                     GADDTWSPVYSLPVGNATAVWTGTEVIIWGGLTAYGGRTDLGSRYNPTTDTWTSVSTV
                     NAPSERSGHAAFWTGKELLVWGGSTSSNNSSTNTGGRYNPLTDTWAPTSTNGAPRSSG
                     TTVWTGSNMVVLGGTTSITIAGAIYDPSTDTWKAIPAASPPTSYTGQRVVWTGKEIFF
                     WGGVNNTTGKRGGLYNPTTNTWRQPNTFNAPSERTNFSMVWTGKEVVVWGGYEGNNVT
                     LNTGSRYNPATDTWTPTSTAGAPAPRDDHMAVWTGSEMVIHGGNLRT"
BASE COUNT          504 a         1134 c         1047 g          485 t
ORIGIN      
        1 ttcgcaggag gaaaggcggg cgcacatggc gcggctgcgc gaagagttcc tggctgagtg
       61 ggacgccgaa gcgctagagc gcttcttcgc ggaggcggac gcgaaggccg agccgcgcgc
      121 gcgcctgagc ctcccttgga gcgcgacgac cgaggcgctg cccccagatg gcggcgccgt
      181 cgtccgctgg gcgccaccgc gccccgtgga gtttaaggtt gaaggcggcg tcgtcgagtt
      241 cgaatgcatc gggcggcgat ggcgcttcag cgaagacgcg ctaacggtgc tgaggccgtt
      301 gagcgagcgg cgcgtctgca ccgtggccga gctgtgcgag ggcgcgcaga agaggctcgc
      361 ggagcggacg gtgcgggcgc ttctgcgcga ccttctactc aacgggctcg tcgccgtggt
      421 tgacgcctga tgcagcagcc cttcttctgc tcacagctct cgcgcggcgc gggcgaaaag
      481 agtttcggca cggcctcggt gggcgccgtc tggatgctcc tggagtacgc gggcgcgtgg
      541 gggccgcgcg tgctcgacga ctgcgcgctc gcgcccgagg tcaagtcgtt cttccggcac
      601 acgctcgcct cgatacctca ttcccgactt ctattcgtca agcgcggccg ggccggcggc
      661 gacaccttca gcttcttcgt cgtccgctgc cgcgagcgcg agcccttctc cgtcaggttc
      721 gagctcgacg cctacgcgcg cctcaccgac ttggacgtgg ccgcggccgc cgctggcgag
      781 accgcggccg gggggacgct cacgcgcgag cccgtctttc tcgtctgcac gcacgggcgg
      841 cgcgacaagt gctgcgcgaa gttcggcacg cccgtctatc acggcctgcg cgggacggaa
      901 ggcggggcgg tctggcagtc atcgcacgta ggcggcgaca ggttcgccgc taacctcgtc
      961 tgcttcccgc acggcctctt ctactcgcac gtgtcggagg agtcgggcgc gcgcgccgcg
     1021 gccgagtacc gcgccgggcg gctcgcgctc gaaggctaca ggggccgggc ctgctacgcc
     1081 caccacatac aggccgccga gttcttcgcg cgcgcggaga cgggcgccgt cggcctcgac
     1141 gcgctgcgct tcgtgaggtc gaggcggacg gccgagcgca gttggctcgt cagtttctcg
     1201 ggcgcgggcc ggacttacga ggcggccgtg agctgccgca tgtccgagtt caagaacttc
     1261 ataacctgcc actccacgga gcagaagagc gtcccgcagt tctccctcga cggcttccgc
     1321 accctcgacg cctgagaacg aaaatcctca aaaatttcgc ccctgcgcga gcaaccgggc
     1381 gggcgtctcg cccgtcaaag attggttcct gccgccaggc cgtgaccact taaattcccc
     1441 gaatgaagaa tgcgcgcgag ggggaacagc gcaccccttc gtcaagcgtt aagaccgccc
     1501 gccgccccag tgctggccgt gcggatgtat ttaacaagcg gctccccgca ctgttgccgt
     1561 gtgaaccgtt ttgcgccccg gcccgagcct ttgagccgga cgggcgcgcg gtcgcttaat
     1621 attctctcgc ggccgacaca ttcatagcct tacgagtaac ccacgggagt ttaatagaaa
     1681 tgcctcgccc cctcgccccc agcccctcta agaattcgtg cgccctgaag ccgttcgccg
     1741 tcctcgccct gctcgtcgtc gcctgctgcg cggttgtggc ctccgcccct ttcgcttcgc
     1801 agtcggcgcg ctcgcagagc aaagcgggct cgggccgcac gctcagcttc tccgagcgcg
     1861 tcgcctacca gcgcgcggtc gaggaggtct actggcgcca caccgtctgg ccgaaggaga
     1921 acactgcctt taaaccgcgg ctcgacgaga tcttgccggc ggagcagacg gcagcgaggg
     1981 tcgaggagac cctgcgcaag tccgacgcac tggcgaggcg ctggggccgc cccgtcgcgc
     2041 ccgctcagtt gcaggccgag gccgagcgca tggcgcgcga gacgaagcgg cccgaagtgc
     2101 tgcgcgagct ctggcaggcg ctcggcaacg accccttcat aatcgccgaa gtcctcgcgc
     2161 gccccgcgct cgttgacagg ctcgcgcgca cctccttcga ggccgagcag aaggccgcgg
     2221 gcgccgaagc ccccttcgat tcctggtggg ccgaggccgg cgacagcttc acggccgacg
     2281 cctcggccgg cgcgggtttc gagtacagcc tggcggaagt cagggaagcc gcgggcgccg
     2341 acgacacctg gtcgccggtg tactcgctac ccgtcggcaa cgccacggcc gtctggacgg
     2401 gtacggaggt catcatctgg ggcggcttga ccgcgtacgg cgggcggaca gacctcggct
     2461 cccgctacaa ccccacgacc gacacctgga cttcggtctc tacggtcaac gccccttcgg
     2521 agcgcagcgg ccacgccgcc ttctggacgg gtaaggagtt gctcgtctgg ggcggcagca
     2581 ccagcagcaa caacagctcg accaacaccg gcggccgcta caaccccttg actgacacct
     2641 gggccccgac ctcgaccaac ggcgcccccc gcagctcggg taccacggtc tggacgggct
     2701 cgaatatggt cgtcctcggc ggcaccacct ccatcaccat cgcgggtgcc atctacgacc
     2761 cttcgactga cacttggaag gcgattccgg ccgccagccc gcccacctcc tacaccggcc
     2821 aacgtgtggt ctggacgggc aaagagatat tcttctgggg cggcgtcaac aacaccacgg
     2881 gcaagagggg cgggctctac aaccccacga ccaacacgtg gcgccagccc aacaccttca
     2941 acgccccctc agagcgcacc aacttctcga tggtctggac gggcaaggag gtcgtcgtct
     3001 ggggcggcta tgagggcaac aacgtcacgc tcaacacggg cagccgctac aaccctgcga
     3061 ccgacacctg gacgccgacc tcgacggccg gcgcgccggc cccgcgcgac gaccacatgg
     3121 ccgtctggac cggctccgag atggtcatcc acggcggcaa cctgcgcacc
//
LOCUS       DASPKR010000191         2299 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_800441, whole genome shotgun sequence.
ACCESSION   DASPKR010000191 DASPKR010000000
VERSION     DASPKR010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_800441"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1044
                     /locus_tag="VD968_05275"
     CDS             <1..1044
                     /locus_tag="VD968_05275"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HYE13837.1"
                     /translation="AGAIILGVTNCAEMALDYTSDNPVFGRTLNPHDESRTPGGSSGG
                     CAAAVASCMSAGSLGSDLSGSVRIPAHFCGVAALKPTAGRVPGRGHFPRLEGDYKLGA
                     SLGPVARTVEDLALLFRVLAGGLGRAKGVRSLKGKRAVWYADDGSVPVSDEIREAVMR
                     VAAILSSAGMRVEEELPPGVGRGTELWLGLFSSQTRRVVGETYAGREAEAGPAARAIL
                     ERPAVPEEQARAEWHAARAERERLRAELLKWMKGTPLLVAPVGSVAAFRHGESRRVEV
                     GGRAVSTFRAFGHSQAFNVFDLPAACVPAGRTREGLPVGVQIVGRPFEEATVLAAARA
                     VEEALPNAGLNPL"
     gene            1145..2167
                     /locus_tag="VD968_05280"
     CDS             1145..2167
                     /locus_tag="VD968_05280"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HYE13838.1"
                     /translation="MAELGFIVFLMFVAISALVIAAKTIKIVPQATVMLIERLGRFSR
                     VADSGLNVIVPFLDKPRGVYWTNVRPGLTSIDLREQYIDLPPQPVITRDNVTIHVDSV
                     VYWQITDPKKAVYEVADLIGGIVQLTITGMRAVMGDMDLDHTLSSRDQINNRLRIILD
                     EATDKWGVKVTRVDVKNITPPEDVRVTMEKQMTAERNRRALVLQAEGERQAAITRAEG
                     EKQSAITRAEGEKQSAILQAEGAAQARLRNAEAEAEAIGQIARAIGTGDPAQYLITQR
                     YIESLRDMSKGNNSKVVFMPVETSTMLSSIGAIKEMFAETGEPRKRDGGEQQLPPGRP
                     RQLPNG"
BASE COUNT          392 a          748 c          801 g          358 t
ORIGIN      
        1 gcgggcgcga tcatactggg cgtgacgaac tgcgcagaga tggcgctcga ctacacttct
       61 gacaaccccg tcttcggccg cacgctcaac ccgcacgacg agtcgcgcac gcccggcggc
      121 tcaagcggcg ggtgcgcggc ggcagtcgcg tcatgcatgt cggccgggag cttggggagc
      181 gacctctcag gctcggtgcg aataccggcg cacttctgcg gcgtcgccgc gctgaagccg
      241 acggccggcc gcgtccccgg ccgcggccac ttcccgcggc tcgaaggcga ctacaagctg
      301 ggcgcgagcc tcggccccgt cgcgcgcact gtcgaagacc tcgcgctcct cttccgcgtg
      361 ctggccgggg ggctggggag ggcaaagggc gtgcgctcac ttaaaggcaa gcgcgcggtg
      421 tggtacgccg acgacggcag cgttcccgtg agcgacgaga taagggaagc ggttatgagg
      481 gtcgcagcga ttctctcgtc cgcggggatg cgtgtcgaag aagaactgcc gccgggagtc
      541 gggaggggga ctgagctttg gctggggctc ttctcgtcgc agacgcggcg cgtggtcggc
      601 gagacttacg ccggccgcga ggcggaggcc ggcccggcgg cgcgcgcgat tctcgaacgg
      661 cccgccgtcc cggaagagca ggcgagagcc gaatggcacg ctgcgcgagc ggagcgcgag
      721 cgcctgcgcg cggagctttt gaagtggatg aaagggacgc cgcttctcgt cgcgccggtc
      781 ggctcggtcg ctgccttccg gcacggagag tcgcgtcggg tcgaagtggg cggccgcgcc
      841 gtcagcactt tccgcgcctt cggccactcg caggcgttta acgtcttcga tttgccggcg
      901 gcgtgcgtcc ccgccggccg cacgcgcgag gggctgcccg tcggcgtgca gatcgtcggc
      961 cggccgttcg aggaggcgac cgtgctggcg gccgcgcgcg ccgtcgagga ggcgcttcca
     1021 aacgcgggcc tgaatccgtt atagtttacg ggaatcatgt ttcgcggtcg ccgccgtgta
     1081 gtattccgta tttgacccca ctcgccgtct gaaggcgcgc ggggcgcgcg ccgccggagg
     1141 tcttatggct gaactcggtt tcatcgtctt cctcatgttc gtcgctatca gcgcgctcgt
     1201 catcgccgcg aagaccatca agatagtgcc gcaggccacc gtcatgctca tcgagcggct
     1261 cgggcgcttc agccgcgtgg ccgacagcgg cctcaacgtc atcgtcccgt tcctcgacaa
     1321 gccgcgcggc gtctattgga cgaacgtgcg gccgggcctc acctcgattg acctgcgcga
     1381 gcagtacatt gatctgcctc cccagccggt gattacgcgc gacaacgtga cgattcacgt
     1441 tgactcagtc gtctattggc agatcaccga ccccaagaag gccgtctatg aggtcgcgga
     1501 tttaatcggc ggcatagtcc agttgaccat aacgggcatg cgcgccgtga tgggcgacat
     1561 ggacctggat cacacgctct cgtcacgcga ccagatcaac aaccgcctgc gcatcatcct
     1621 ggacgaagcg acggacaagt ggggcgtgaa ggtgacgcgc gtggacgtga agaacatcac
     1681 gccgcccgag gacgtgcgcg tgacgatgga gaagcagatg acggccgagc gcaaccgccg
     1741 cgccttagtc cttcaggcag agggcgagcg gcaggccgcc atcacgcgcg ccgagggcga
     1801 gaagcagtcg gcgataacga gggcggaggg cgagaagcag tcggcgatac tgcaggccga
     1861 gggcgcggcg caggcacgcc ttcgcaacgc cgaggccgag gccgaggcca tcggccagat
     1921 agcgcgagcc atcggcaccg gcgaccccgc gcagtacctc atcactcaac gctacatcga
     1981 gagcctacgc gacatgtcga agggcaacaa ctccaaagtc gtcttcatgc ccgtcgagac
     2041 ctcaacgatg ctctctagca tcggcgccat caaggagatg ttcgccgaga ccggcgagcc
     2101 gagaaagcgc gacggcggcg agcagcaact cccgcccggc cgcccccgcc aactgccgaa
     2161 cggctgagac gcgggttaaa agccgtgcgt tgatatgact gtgtagcgcg acccgccggg
     2221 gccgagctcg ctgcggacga ttgttagctc gctgactgtc aatgtgtgtg ggccgaagcc
     2281 tgtcctgcag tgggcctcg
//
LOCUS       DASPKR010000192         3932 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1835769, whole genome shotgun sequence.
ACCESSION   DASPKR010000192 DASPKR010000000
VERSION     DASPKR010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3932)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1835769"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(337..1908)
                     /locus_tag="VD968_05285"
     CDS             complement(337..1908)
                     /locus_tag="VD968_05285"
                     /inference="COORDINATES: protein motif:HMM:TIGR00368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HYE13839.1"
                     /translation="MLFRTQSAAVYGIDADLVDIEVDLTPARGEGDTAPVTIVGLPDA
                     AVRESRERIRAAVNNSGFFFPIHKTTINLAPADVRKEGASFDLPIALGILGANGDLGG
                     AEGLTDVLSVGELSLDGRVRPVRGALPVALRAREAGIRSLFLPEENAKEAAVVAGVNV
                     YAVADLRGAVVLASALANGGGAQRPEPVRVKTEDLLAEAGRYDVDFREVRGQAAAKRA
                     LEVASAGSHNILLIGPPGSGKTMLAKRLPTILPPLEFEAALELTKIHSVAGLTGRAGL
                     VTERPFRSPHHTVSDAGLIGGGSIPRPGEVSLAHHGVLFLDELPEFDRSVLEVLRQPL
                     EDQRVTISRAAMTLTFPASFMLACAMNPCPCGYWNDPVRECRCTPPQIQRYVGRISGP
                     LLDRIDIHVDVPAVRFKELSGASAPEGEPSSAIRERVLRARDRQRERLRGSGVFSNAQ
                     MPPRLIRRHCRVSAECERLLEAAMTRQGLSARAYDRILKVSRTVADLGGSDEILPAHV
                     AEAVGYRSLDRTYWA"
     gene            complement(2041..3792)
                     /locus_tag="VD968_05290"
     CDS             complement(2041..3792)
                     /locus_tag="VD968_05290"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HYE13840.1"
                     /translation="MKNTSLPRLLASAALVAAFVAPSLTLQAQVPTQSYLRNTPSEIE
                     REDPRVQQIIARAEEQFRLGELNLRDNKREAARQKFDQAVDTVLESGMDVRSNPRLNK
                     FYLELVERVYRVEVPTQGVPSAQPNGAQFVEVAQQGSAPAVPPQVGFSDQKFEPSPLD
                     ALSKLVLNKDETNVTDDDVAKLDAEIKNTLDFKFRPHPLVQGFINYYQGRGRATMETG
                     LRRSGQYMTMARRIFREEGVPEDIVWLGQVESAWRPTARSWAAASGLWQFIPSTGSRF
                     GLRQTAYVDERNGFEKATRASARYLKFLANRYRGDWELAMAAYNTGEGNIDRAIRRAG
                     VADFWTIYPYIAQETRNYVPNILAVILVAKSPEKYGFRNVQRMAPLAYDTVSVPSSTS
                     LHLVASLTDSSVDYIRALNPELRRDMTPPGEAFHLRVPPRRGAQLVAMLKRIPVDRRN
                     QLARVVSVQAGEDLQAVAARTGTSLASLQQWNQGVDVRQGTKLVVPAGGIVRTMKAYE
                     RPATAGAPAPAAGSSLRTVTAKAGETIAQIASRMGAPVEEVAKLNGITASAPLARGQQ
                     IRVPSSGAAATPQSRRR"
BASE COUNT          590 a         1237 c         1439 g          666 t
ORIGIN      
        1 tagacgaaca ggttcgggct gttagcgcct tcgcctacca cccccttgat ctgctccatg
       61 gcgtaggcca tgtcaacggc caagttatta tcgccggcca tgtagatcat gattgtccat
      121 tctttgttgt tcatcgttcc gacctcatgc agacgtgtgc gggcgttgaa ggcttccccg
      181 ctccgggagt cgaaggccga acaggcgagg ggctatcgcg gccgggttaa acgggggtga
      241 gggcgaccgt gaggcttacg gcgaaccctt tgacgtggtg gcgtacgata tttgaattag
      301 cccgccgagt caacggatta aaggctctcc gcacactcag gcccagtagg ttcggtcgag
      361 cgagcggtag ccgaccgcct cggcgacgtg cgcggggagg atttcgtctg agccgccgag
      421 gtccgcgacg gtgcggctga ctttgagtat gcggtcgtag gcgcgcgccg agagcccctg
      481 gcgcgtcatg gcggcttcga gcagccgctc gcactccgcg ctcacgcggc agtggcggcg
      541 tatgaggcgc ggcggcatct gcgcgttcga gaagacgccg ctgccgcgca gccgctcgcg
      601 ctggcggtcg cgcgcgcgta gcacccgctc gcgtatggcc gaggacggct cgccctcggg
      661 agccgaggcg cccgacagct ccttgaagcg cacggcaggc acgtccacgt gtatgtctat
      721 gcggtcgagg agcggccccg agatgcggcc gacgtagcgc tgtatctgcg gcggcgtgca
      781 gcggcactcg cgcacggggt cgttccagta accgcagggg catgggttca tcgcgcaggc
      841 gagcatgaag gaggcgggga aggtgagcgt catggcggcg cggcttatcg tcacgcgctg
      901 gtcttcgagc ggctggcgca ggacttcgag cacggagcgg tcgaactcgg gcagctcgtc
      961 gaggaagagc acgccgtggt gggcgagcga gacttcgccg gggcgcggta tcgagccgcc
     1021 cccgatcagt ccagcgtcgc tgacggtgtg gtgcggcgag cggaaggggc gctcggtgac
     1081 caatccggcg cggcccgtca gccccgcgac cgagtgtatc ttcgtcaact caagcgcggc
     1141 ctcgaactcg agcggcggga ggatagtggg cagccgcttc gccagcatcg tcttgccgga
     1201 gccgggcggg cctatgagca gaatattatg agagccggcg gaggcgactt cgagggcgcg
     1261 cttggcggcg gcctgccctc gcacctctcg gaagtcaacg tcgtagcgcc cggcctcggc
     1321 gagcaggtct tccgtcttga ctctgacggg ctcaggacgt tgcgcgccgc ccccgttcgc
     1381 gagcgccgac gcgagaacga ccgcgccgcg caaatctgcg accgcataga cgttgacgcc
     1441 cgcgacgacc gccgcctcct tcgcgttctc ctcgggcagg aagaggctgc gtatgccggc
     1501 ttcgcgcgcg cgcagggcta cggggagcgc gccgcgcacg gggcgcacgc gcccgtcgag
     1561 cgaaagctcg ccgacggaga gaacgtccgt cagaccttcg gcgccgccga ggtcgccgtt
     1621 ggcgccgagt atgccgagcg cgatggggag gtcgaagctc gcgccctcct tgcgcacgtc
     1681 ggcgggcgcg aggttgatgg tcgtcttgtg tatggggaag aagaaaccgc tgttattgac
     1741 ggcggcgcgt atgcgctcgc gcgactcgcg cacggccgcg tcgggcaggc cgacgatcgt
     1801 cacgggcgcc gtgtcgccct cgccgcgcgc gggcgtgagg tcaacttcta tgtcaacgag
     1861 gtctgcgtca atgccgtaaa cggcggccga ctgcgtgcgg aagagcatac gggcgcaccc
     1921 cttccccctt ctcggggaga agagcggagg ggtggcttcg ctcgggctca aaaatggaag
     1981 cgagcgcgct tgcccgtcgg tgcgggaagc gcgctcgcct cactccgaaa gagttattga
     2041 ctagcggcgg cgcgactgcg gcgtggcggc ggcgccagac gacggcaccc tgatctgctg
     2101 gccgcgcgcg agcggcgcgc tggcggtgat gccgttgagc ttcgcgacct cttcgacggg
     2161 cgcgcccatg cgcgaggcta tctgcgcgat ggtctcgccg gccttcgccg tcacggtgcg
     2221 gaggctgctg ccggccgctg gcgccggggc gccggccgtg gccgggcgct cgtaagcctt
     2281 catcgtcctg acgatgccgc cggccgggac gacaagcttc gtcccctgcc tgacgtcaac
     2341 gccctggttc cactgctgga gcgaagcgag gctcgtgcct gtgcgggccg cgacggcctg
     2401 taggtcttcg ccggcctgga cgctgacgac gcgcgcgagc tggttgcggc ggtcaacggg
     2461 tatgcgcttg agcatcgcga ccaactgcgc gccgcggcgc ggcgggacgc gaaggtggaa
     2521 ggcctcgccc ggcggcgtca tgtcgcggcg aagctccggg ttgagcgcgc gtatgtagtc
     2581 aacgctcgaa tcggtgagcg aggctacgag gtgcaggctc gtcgaagaag gcacgctcac
     2641 ggtgtcgtag gccagcggcg ccatcctctg cacgttgcgg aagccgtact tctcggggct
     2701 cttggcgacg agtatgacgg ccagaatgtt cgggacgtag ttgcgcgtct cctgcgctat
     2761 gtacgggtag attgtccaga agtccgcgac cccggcgcgc ctaatcgcgc ggtcaatgtt
     2821 gccctcgccc gtgttgtagg ctgccatcgc cagctcccag tcgccgcggt agcggttggc
     2881 taggaacttg aggtagcggg ccgaggcgcg cgtagccttc tcaaagccgt tgcgctcatc
     2941 aacgtaggcg gtctggcgca ggccgaagcg cgagcccgtc gaggggatga actgccagag
     3001 gccggaggcg gccgcccagg agcgcgccgt cgggcgccag gcgctctcga cctgtccgag
     3061 ccagacgatg tcctcgggca cgccctcctc gcggaaaatc ctgcgggcca tcgtcatgta
     3121 ctggcccgag cggcgcaggc ccgtctccat cgtggcgcgg ccgcggcctt ggtagtagtt
     3181 gatgaaccct tggacgagcg ggtgcgggcg gaacttgaag tcgagcgtgt tcttgatctc
     3241 ggcgtcgagc ttcgcgacgt cgtcgtccgt gacgttcgtc tcgtccttgt tgagaacgag
     3301 cttcgagagc gcgtcgagcg gcgacggctc gaacttctgg tcgctgaagc cgacctgcgg
     3361 cgggacggcg ggcgcggagc cctgctgcgc gacctcgacg aactgcgcgc cgttaggctg
     3421 cgccgagggc acgccctgcg tcgggacttc gacgcggtag acgcgctcga ccagctccag
     3481 ataaaacttg ttcagacgcg ggttcgagcg cacgtccatg ccggactcca acacggtgtc
     3541 gacggcctgg tcgaacttct ggcgcgcggc ctcgcgcttg ttgtcgcgga ggttcagctc
     3601 gccgaggcgg aactgctctt cggcgcgggc gatgatctgc tgcacgcgcg ggtcttcgcg
     3661 ctcgatctcg ctcggcgtgt tgcggaggta tgattgcgtg gggacttgcg cctggagcgt
     3721 gagcgaagga gcgacgaacg cggcgacgag tgcggcgcta gcgagtaagc gggggaggct
     3781 cgtgttcttc aatcgttgat ctcctttgcg agagaaagcg aatccacgat ggcgaccgtt
     3841 gcgaaggggg tcgcacgagc ggcatccact gtctgaaatt acgggagttt gacgccccgc
     3901 gtcggagacg gccctgcgcg aagggcttcc ct
//
LOCUS       DASPKR010000193         2752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1449069, whole genome shotgun sequence.
ACCESSION   DASPKR010000193 DASPKR010000000
VERSION     DASPKR010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2752)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2752
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1449069"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..925
                     /gene="hemG"
                     /locus_tag="VD968_05295"
     CDS             <1..925
                     /gene="hemG"
                     /locus_tag="VD968_05295"
                     /EC_number="1.3.3.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004729 - oxygen-dependent
                     protoporphyrinogen oxidase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="protoporphyrinogen oxidase"
                     /protein_id="HYE13841.1"
                     /translation="MVGGIYTADPELLSLRATMPRFLEMEREHRSLILAMMRAARAQR
                     SAGGAMAGASGARYGLFLSFDEGMQVLTDALAARLPASCLRLKTRAESAAFEPAQGRW
                     AVCAGGETIQADAVIVALPAHAAARLLRGADAGLAGELEAIPYASTATVNLAFRREAV
                     RHPLDGFGFVVPFAERRATLACTFSSVKFAARAPEGHQLLRAFVGGALQPEMFELDDE
                     KMTEVVVRDLRELLGVSAPPLFAHVERWPRSMAQYHLGHTGRVARIRARLERLPGLKL
                     CGNAYTGAGVPDCVRTGEEAAEELFVDTPAA"
     gene            1017..1820
                     /locus_tag="VD968_05300"
     CDS             1017..1820
                     /locus_tag="VD968_05300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13842.1"
                     /translation="MNEQLNSRSDVEGKASGVSPVKERRAALRKLLWPALALLLLIPA
                     LMWAQAPRGSARRQAALADLNSFLSDRIEPAEMRQVRGLSSREFSVWLNRASYTLAEK
                     RAIRRKLQPVLSARRFEAVLLKAVRPKGGGGTIDLVLVAVLPNLRDVLNSDVVILSSD
                     SDGGDGGGNTGGGNGNTGGGNGNTGGGNGNGNGNGNGNGNGNGNENSNSNDPFCSDYK
                     SCFNKRCTPATVFKPCPPSQCASDADCGGGSTGGTTGGGGGILETISAF"
     gene            complement(1848..>2752)
                     /locus_tag="VD968_05305"
     CDS             complement(1848..>2752)
                     /locus_tag="VD968_05305"
                     /inference="COORDINATES: protein motif:HMM:NF013998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HYE13843.1"
                     /translation="GDPAPVIVTVHNTKRVLPSFSVMVEARSRDEAGANRARRFGAWR
                     ARFSKRVLAYFMYAPRGAKVEQRVEQTFERRGRVLVTGFEISTRFPFGFFRLRRRLRA
                     RDVEIVVYPKPERAGDELHLLPIDAGQMESGRRGQGQDLHSLREYQPHDDVRHIDWKA
                     TARQKRLTVREFTAEDERRVHVALDTCASEGDGERFERGVSIAASLVAHFIDERAEVR
                     LSLGEEAGRYGTGREHLYESLRRLALVAPQGGAGDAARREEIWRRIAPPSRGEPEGYV
                     ILLTTAPPGTIPADLWRKSHVIHL"
BASE COUNT          440 a          952 c          947 g          413 t
ORIGIN      
        1 gatggtaggc ggcatataca ctgccgaccc cgagcttctc agcttacgcg cgaccatgcc
       61 ccgcttcctt gagatggagc gcgagcaccg cagtctgata ctcgcgatga tgagggccgc
      121 gagggcgcag aggtcggcgg gcggcgcgat ggcgggggcg agcggcgcgc gatacggcct
      181 cttcctctcc ttcgacgaag ggatgcaggt cttgacagac gcgctggccg cccgtctgcc
      241 cgcctcgtgc ctgcgactaa agactcgcgc agagtcggcc gccttcgagc ccgcacaagg
      301 gcgctgggcc gtctgcgcgg gcggcgagac gattcaagca gacgccgtta tcgtcgcgct
      361 ccccgcgcac gcggcggcgc ggcttctgcg cggcgcagac gccgggctcg cgggcgagct
      421 cgaagccata ccttacgcct cgaccgccac ggtcaacctc gccttccggc gcgaagccgt
      481 ccgtcaccca ctggacggct tcggcttcgt cgtccccttc gccgagcggc gcgcgactct
      541 ggcctgcaca ttcagcagcg tcaagttcgc ggcccgcgct cccgagggcc accagctgct
      601 gcgcgccttc gtcggcggcg cgttacagcc agagatgttt gagcttgatg acgagaagat
      661 gactgaagtc gtcgtccgag acctgcgcga gctgctcggc gtgtccgccc cgccgctctt
      721 cgcgcacgta gagcgctggc cgcgctcgat ggcgcagtac cacctcggcc acaccgggcg
      781 cgtcgcgcgc atacgcgccc ggctcgaacg cctacccggc ctcaagctct gcggcaacgc
      841 ctacacgggc gcgggcgtcc ccgactgcgt gcgcacgggc gaggaggcgg ccgaagaact
      901 tttcgttgac acgcccgccg cgtgagcata tcgtagcccg gctctaggaa ctctcatctc
      961 aacacagcct tacctcgctc ccgtacccgg ctacccaccc agcgaaagga gacaccatga
     1021 acgagcagct caacagcaga agtgacgttg aaggcaaggc ttcgggggtc agtcccgtca
     1081 aggagcgtcg cgcggcgctg cgcaaactgc tctggcccgc gctcgcactg ctcctcttga
     1141 tacccgcgct catgtgggcg caggcgccga ggggctctgc ccgccggcag gccgcgctcg
     1201 ccgacttaaa ctcgttcctg tccgacagaa ttgagcccgc ggagatgagg caggtgaggg
     1261 gcctgagcag tcgggagttc tcggtgtggc tgaaccgcgc gtcttacacg ctggccgaga
     1321 agagggccat ccggcggaag cttcagcccg tcctctcggc ccgccgcttc gaggcggtgc
     1381 tgctcaaggc ggtcaggccg aagggcggcg gagggacgat tgacttggtt ctcgtcgccg
     1441 tcctccctaa cctacgcgat gtgctcaact ccgacgtggt catcctgagc agcgactcgg
     1501 acggcggcga cggcggcggg aacaccgggg gcggcaatgg caacacgggc ggcggcaatg
     1561 gcaacaccgg cgggggcaac gggaatggta acgggaacgg caatgggaac ggcaacggga
     1621 acgggaacga gaacagtaac agcaacgacc ccttctgctc cgattacaag tcgtgcttca
     1681 acaagcgctg cactccggct acggtcttca agccctgccc gccctcccag tgtgcatccg
     1741 acgccgattg cggcggcggc agcacgggcg gcacgacggg cggaggaggg ggcatcctcg
     1801 aaaccatatc cgccttctga cgcgcggggc gcggcgcccc cgcccgctca caagtgaatc
     1861 acgtgcgact tgcgccagag gtctgcgggg atggtgccgg gaggggccgt cgtgaggagt
     1921 atgacgtagc cttcgggctc gccccgtgag ggcggggcga tgcgccgcca gatttcttcg
     1981 cggcgggccg cgtcgcccgc cccgccctgc ggcgcgacga gcgcgagcct gcgcagcgat
     2041 tcgtagaggt gctcgcggcc ggtgccgtag cggcccgcct cttcgcccag ggagaggcga
     2101 acctcggccc gctcgtcaat gaagtgtgcc acgagcgatg cggcgataga gacgccccgc
     2161 tcgaagcgct cgccgtcgcc ctcggaggcg caggtgtcga gcgcgacgtg gacgcgcctc
     2221 tcgtcctcgg ccgtgaactc tcgcacggtc aggcgcttct gccgtgcggt cgccttccag
     2281 tcaatgtggc gcacgtcgtc gtgcggctgg tactcgcgca agctatgcag gtcctggccc
     2341 tgcccgcgcc gccccgactc catctggccg gcgtcaatcg gcagaaggtg cagctcgtcg
     2401 cccgcgcgct ccggcttcgg atagacgact atctcgacgt cgcgcgcgcg caggcgccgc
     2461 cgcaggcgga agaagccgaa cgggaagcgg gtggaaatct cgaagcccgt gacgagcacg
     2521 cggccgcgcc gctcgaaggt ctgctctact ctttgctcga ccttagcgcc gcgcggggcg
     2581 tacatgaagt aggcgagcac acgcttcgag aaccgcgcgc gccacgcccc gaagcggcgc
     2641 gcacggttcg cgccggcttc gtcgcggctg cgcgcctcga ccatgacgga gaaagagggt
     2701 agcacgcgct tcgtgttgtg cacggtgacg atgacgggcg cggggtcgcc ca
//
LOCUS       DASPKR010000194        11332 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_671488, whole genome shotgun sequence.
ACCESSION   DASPKR010000194 DASPKR010000000
VERSION     DASPKR010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11332)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11332
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671488"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..324)
                     /locus_tag="VD968_05310"
     CDS             complement(<1..324)
                     /locus_tag="VD968_05310"
                     /inference="COORDINATES: protein motif:HMM:NF014877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13844.1"
                     /translation="MSPKHELAPIRFGTDGWRALIAHEFTFENLERVSQAYADYLRQQ
                     HAEATEAGARLPHPRVVVGHDRRFLSEQFAERSAEVLAGNGLLVSLFEGDVPTPLVSW
                     AVRERG"
     gene            complement(321..1367)
                     /locus_tag="VD968_05315"
     CDS             complement(321..1367)
                     /locus_tag="VD968_05315"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NDP-sugar synthase"
                     /protein_id="HYE13845.1"
                     /translation="MQALILAGGKGTRLRPLTVYTPKPVVPICNRPFLLYQIGTLRRA
                     GITDITLSLSYQPHKIEQQLGDGSEFGVKLTYTVEPQPMGTAGAYKFAEDLIREPTVV
                     FNGDILTDLDLEAVIREHDRRRAAATIVLAPVENPSAYGLVETEPDGRISRFLEKPKA
                     EEIRVNTINAGTYVLDPRVLDFIPAGENYSFEYGLFPDLLSRGEKFYAHVPRETYWID
                     IGTPARYLQAHMDLLAGRVRTVEAVRRRGDFDVATAAEVDDASIVADGCTVKPGAQVV
                     NCVLGEGVHLEERARVENSVIWPHTRVGAGALVLGAVVGRGCHVGRSAVVGPGAVLGD
                     KTNLTDYTQAGGAL"
     gene            1624..2811
                     /locus_tag="VD968_05320"
     CDS             1624..2811
                     /locus_tag="VD968_05320"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HYE13846.1"
                     /translation="MSERREAVIISACRTPTGKFMGALKDFTAPQLGSMVVREAVRRA
                     GVAPEEVDEVIMGCVIQAGLGQNPARQAALHGGIPFGVSAVTVNKVCGSGLKSVMMAA
                     QGVQLGDAEVVVAGGMESMSNAPYLLPKAREGYRMGNGTLVDAMIHDGLWCAFENYHM
                     GNTGEVVAERYGVTRQEQDEYAYNSHRKALAAIKAGKFRDEILAVEIPQKKGDPVIFD
                     TDEPVRADTSVETLGKLKAAFRKEGTVTAGNAPGVNDGASALVVTSMERARQLGVEPM
                     ARIAAQATSGIQPELVMMAPVEAVRKVLSKAGWSLGEVDLIELNEAFSVQAIAIIREL
                     GLDPDRVNVNGGAVALGHAIGQSGSRLLTTMLYEMKRRGARRGLAALCLGGGNAVALA
                     VER"
     gene            2840..3358
                     /locus_tag="VD968_05325"
     CDS             2840..3358
                     /locus_tag="VD968_05325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13847.1"
                     /translation="MTPQDHNKVLGIMHLIYGGMNAILLPFVFIFVFLGAGLTSIDPS
                     APPEAGLVFVLIGLFFGLLFLMFGLPPLLAGYGMLRRKSWARGWGIAAAVFAALSFPL
                     GTALCVYTLWFLLGNEGKGFYEGRADWRHQEWRGSLGAARQQGWGAQSSTYGRQAEYV
                     PPPQPPDWRGDS"
     gene            3377..4222
                     /locus_tag="VD968_05330"
     CDS             3377..4222
                     /locus_tag="VD968_05330"
                     /EC_number="1.1.1.157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyryl-CoA dehydrogenase"
                     /protein_id="HYE13848.1"
                     /translation="MAEVFGVVGAGTMGSGIAQVAARSGYDVVLRDVSEEFLARGMST
                     IDKSLQRDVDKERLKEGEKREIVGRISAVTDLGALSAASFVVEAITESLPAKQEVFRA
                     LDEACGPEAILASNTSSISITKLGAATRRPDKVIGMHFMNPVPVMKLVEVIRGIATSD
                     ETWARTRELAERMGKTALECNDSPGFVSNRVLMPMINEAVFALYEGVATRESIDGIMK
                     LGMNHPMGPLTLADFIGLDVCLAILNVLHEELGDPKYRPCPLLRKYVDAGWLGRKSGR
                     GFYEY"
     gene            4240..5472
                     /locus_tag="VD968_05335"
     CDS             4240..5472
                     /locus_tag="VD968_05335"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13849.1"
                     /translation="MLSKRRQIHCQRCMAGNPLGQELCGRCGTRLMLVFEPSVQRFEG
                     GHVAEGGLEEHLLERISALENHILRLADKLEQTLDLLLKQARTSYQDHALIETVIDAL
                     SDAGSLDRKALGALWRQRRERDEAAHQNRSRCSELRARSLVAHSGRERAAFTRLVDEG
                     FDLVQQGKIAAGVRALERAAPLSPENAPLNAFLGEHFFAKGKTALARDYLARAHAADP
                     EEGRVRLLLGLAAADEGDAEGARALLSEAVNRGGPSFAAHYALGRLAAAEGRWEAALE
                     EFKRALAARPSPEAHYLLGLANYRLGRNRTALRHLSKAVEMDAKYGEAFYLMGLARLR
                     AGEAELAGESFDAALASDAGEARYRAARERLSEPDQIPPPSLLTAAARGRRRLVTGGD
                     ERLAAALRDDALGGPPPR"
     gene            5554..6084
                     /locus_tag="VD968_05340"
     CDS             5554..6084
                     /locus_tag="VD968_05340"
                     /inference="COORDINATES: protein motif:HMM:NF014657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HYE13850.1"
                     /translation="MRIEVESLTEAGRPVESVHEPGRLDLEDEQVRLVSPARLEGRAR
                     RKGEEVRLSGKITAEVEIDCDRCLTPTRAPLEVELDTSFIPSEVAAGAPENVELLAED
                     MGLAAYEGGEVDLDELVREQILLALPTRRLCREECRGLCPHCGADLNAGDCSCERGEV
                     DPRWAALADLKKDEKT"
     gene            6123..6308
                     /gene="rpmF"
                     /locus_tag="VD968_05345"
     CDS             6123..6308
                     /gene="rpmF"
                     /locus_tag="VD968_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017977281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HYE13851.1"
                     /translation="MPNPKRRHSKSRTRQRRAHDALRAPQTSLCPNCQEPRMPHRVCP
                     KCGHYKGREVVKVEQDV"
     gene            6334..7404
                     /gene="plsX"
                     /locus_tag="VD968_05350"
     CDS             6334..7404
                     /gene="plsX"
                     /locus_tag="VD968_05350"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: protein motif:HMM:TIGR00182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HYE13852.1"
                     /translation="MRQRQLTGKVVVDAMGSDRAPHPEIDGALAAARDFRVRVILVGQ
                     EERVVPELRRCGWRRDGDKGVEFVEAPEFIGMDEAVATAVRRKRRSSLRVGARLVADG
                     HADGMVSAGNTGAAMATAKMVIGMLPGVDRPALAAMLPSKSGRPTLLLDVGANADCKP
                     IHMAQFAIMGDAYTRAVMGTQRPSVGLMSIGEEEAKGNDLTKEAFPLLRDLSSLNFVG
                     NVEGRDVFTGQVDVIVTDGFTGNVILKLSEGLQEAVVSMIKRELSATVITKTGAVLAR
                     PAFQNLKKRLDYAEYGGAPLLGVRSVVVIGHGNSNARAVRNAIRNVKEFSERGAIARI
                     ESGVAETNARQSRPARAAAASD"
     gene            7422..8408
                     /locus_tag="VD968_05355"
     CDS             7422..8408
                     /locus_tag="VD968_05355"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: protein motif:HMM:NF006829.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HYE13853.1"
                     /translation="MANTNAAIIGTGRAYPEGVLTNADLEKMVETSDEWITSRTGIRQ
                     RHKAAEGEYTSLFAVQAARQAIERARVDPIDIGLVICATVTPDQILPSTGCLIQAELG
                     CNKAAAFDLAAACSGFLYGLTVANQMIRTGQTRHALVVGAEILTRYVDYTDRSTCVIF
                     GDGAGAAVLGPAEEGRGILSTRIYSDGRFAEQLFSPGGGTRIPPTAETLSQGLHFYKM
                     RGNELFKVAVRSMADVSREVLEEAGYKADDVKLFIPHQANQRITDAVANNLKVDSSIV
                     YSNIEMHGNTSSASIPIALDECIEMGRVKEGDLVLLASFGGGVTWGGVLIKW"
     gene            8420..9391
                     /gene="fabD"
                     /locus_tag="VD968_05360"
     CDS             8420..9391
                     /gene="fabD"
                     /locus_tag="VD968_05360"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: protein motif:HMM:NF012901.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HYE13854.1"
                     /translation="MSVAFIFPGQGSQAPGMGRELAERYPAAREVFEEADDALGFKLS
                     ELCFNGPAEELQLTENTQPAILATSVAALRAAESEGFPRPDFVAGHSLGEYSALVAAG
                     ALELRDAVRVVRNRGRFMQEAVPVGAGAMAAILGADLEAVEAACAEARGEGEVCSPAN
                     INSPGQIVIAGSAAAVERAIPLLKARGAKRAVPLKVSAPFHCALMLPAQERLAAELEG
                     MAFADLAMPLVTNVDAALIRTGAEARESLVRQVSQPVRWRESVELLDREGAREFVEVG
                     PGKVLSGLVRQTAREARCLNVEDVSSLLAARAELSGGGRAASGDGAG"
     gene            9442..9687
                     /locus_tag="VD968_05365"
     CDS             9442..9687
                     /locus_tag="VD968_05365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013941332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HYE13855.1"
                     /translation="MADQEIENKVKQIIVDELGVDENEVTPNARFIDDLGADSLDTVE
                     LVMRFEEEFGIEIPDEDAEKIQSVRDAYNYIDQHKKE"
     gene            9811..11079
                     /gene="fabF"
                     /locus_tag="VD968_05370"
     CDS             9811..11079
                     /gene="fabF"
                     /locus_tag="VD968_05370"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007403258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HYE13856.1"
                     /translation="MKRRVVVTGLGLVTPCGHTVADTWSAMMAGRSGVGYIEKFDTSK
                     FSVRIGAEVKGFDPLKFIEKKEARKMGAFIHFAVGAADEAVYDSQLVERGQKITDRYG
                     EEVSWRVGTYISSGIGDFWAIEREHSKLLDEGPHRVSPFFIPSAIVNLAAGQVSIRFG
                     ARGPNSATATACSAGAHAIGDSLKIIQRGDADVMICGGAESAITPMAVAGFAAMRALS
                     TRNDDPPRASRPFERDRDGFVIGEGAGLLVLEELEFARARGAKIYAELVGYGLTGDAF
                     HITMPDETASGAVRVMQMALRDAGVSPEEVGYVNAHGTSTPYNDKFETLAIKKTFGEH
                     AYKLAVSSTKSMTGHLLGAAGGIEAVFSVLAIHEGKLPPTINYVNPDPECDLDYVPNE
                     SREASIRYALSNNFGFGGTNAALLFKRYEE"
BASE COUNT         1910 a         3711 c         3966 g         1745 t
ORIGIN      
        1 cccgcgctcg cgcacggccc acgagacgag cggcgtggga acgtcgccct cgaacaagga
       61 gacgagaagg ccgttgccgg cgaggacttc cgccgagcgc tcggcgaact gctcggagag
      121 gaagcgccgg tcgtggccta cgacgacgcg ggggtgcggc agccgcgccc cggcctcggt
      181 cgcctcggcg tgctgctgtc ggaggtagtc ggcgtaggct tgggagacgc gctccaggtt
      241 ctcgaacgtg aactcgtgcg ctatgagcgc gcgccagccg tcggtgccga accttatcgg
      301 cgccagctcg tgcttagggc tcacagcgcc cccccggcct gcgtgtaatc tgtcaggttc
      361 gtcttgtcgc cgagcacggc tccggggccg accactgccg aacggccgac gtgacacccg
      421 cgcccgacta ccgcgcccaa gacgagggcg cccgcgccaa cgcgcgtgtg cggccagatg
      481 actgagttct ctacgcgcgc cctctcttcg aggtggacgc cttcgccgag gacgcagttg
      541 acgacctgcg cgccgggctt gacggtgcag ccgtccgcga cgattgacgc gtcgtcaacc
      601 tcggcggccg tcgccacgtc gaagtcgccg cggcgccgca cagcctctac ggttcggacg
      661 cggccggcga gcaggtccat gtgggcctgt aggtagcgcg cgggggtgcc gatgtcaatc
      721 cagtatgtct cgcgggggac gtgcgcgtag aacttctcgc cgcggctgag gaggtctggg
      781 aagaggccgt actcgaagga gtagttctcg cccgccggga tgaagtcgag cacgcgcggg
      841 tcgaggacgt aggtgccggc gttgatggtg ttgacgcgaa tctcctcggc cttcggcttt
      901 tcgaggaagc gcgagattcg gccgtccggc tcggtctcga ccagcccgta agcgctcggg
      961 ttctctacgg gcgcgagcac gatggtcgcg gctgcgcgcc gccggtcgtg ctccctgatg
     1021 acggcttcga ggtcgaggtc ggtcagtatg tcgccgttaa agactaccgt cggctcgcgt
     1081 atcagatctt ctgcgaactt gtaagcgccg gccgtcccca tcggctgcgg ctcgaccgtg
     1141 taggtgagct ttacgccgaa ctccgagccg tcgccgagct gctgctctat cttgtgcggc
     1201 tggtaggaga gcgagagcgt tatgtcggta atgcctgcgc gccgcagcgt ccctatctgg
     1261 tagagcagga aggggcggtt gcagatgggg acgaccggct tgggcgtgta aaccgtcagg
     1321 gggcgcagcc gcgtcccctt gccgcccgcg agtatgagtg cttgcatatg gcccggatga
     1381 gagttgacgg ggctcctgcg atgacggccg cccccgccta tgtgaatcag aacgcggagg
     1441 agtctagcac ccgcgcgcgc gcctttacaa cggcgccgcc gcgcgccgga acgctagctt
     1501 gacacccccc cggccgaacg tataatcgca ctttgagcca atcattctaa attcttaggg
     1561 gcggtaatcg tcgtgcgtgc tctctcagcg gagaagggcg cgcggaaggg gagtggggcg
     1621 gtcatgtcag agagaaggga agccgtaatc ataagcgcct gccgcacgcc gacgggcaag
     1681 ttcatgggtg ctctgaagga cttcacggcg ccgcagctcg gctcgatggt cgtgcgcgag
     1741 gcggtgcggc gcgcgggcgt cgcgccggag gaggtggacg aggtcataat gggctgcgtc
     1801 atacaggccg gcctcggcca gaaccccgcg cggcaggcgg cgctgcacgg cggcataccc
     1861 ttcggcgtct ccgccgtgac cgtcaacaag gtctgcggct cgggcctcaa gtcggtgatg
     1921 atggccgcgc agggcgtgca actcggcgac gcagaggtcg tagtcgcggg cggcatggag
     1981 tccatgtcga acgcgccgta cctgctgccg aaggcgcgcg agggataccg gatgggcaac
     2041 ggcacgctcg tggacgcgat gatccacgac ggcctgtggt gcgcgttcga gaattaccac
     2101 atgggcaaca ccggcgaggt cgtggccgag cgctacggcg taacgcggca ggagcaagac
     2161 gagtacgctt acaactctca ccgaaaggcg ctggcggcga ttaaggccgg gaagttccgt
     2221 gacgaaatcc tcgccgtcga gataccgcag aagaagggcg accccgtcat cttcgacacg
     2281 gacgagcccg tgcgcgcaga cacctccgtc gagactctcg gcaagctcaa ggccgcgttc
     2341 aggaaggaag gcactgtgac tgccggcaac gccccgggcg tgaacgacgg cgcctccgcg
     2401 ctcgtcgtta cttccatgga gcgtgcgcga cagctcggcg tcgagcctat ggcgcgcatc
     2461 gcggcgcagg caacctccgg catccagccc gagcttgtga tgatggcgcc ggtcgaggcc
     2521 gtaaggaagg ttctcagcaa ggccggctgg tcgctcggcg aggttgactt gatagagctt
     2581 aacgaagcct tctccgtcca ggccatcgcc atcatccgcg agcttgggct cgaccccgac
     2641 agggtgaacg tcaacggggg cgccgtcgcg ctcggccacg ccataggcca gtcgggctcg
     2701 cggctcctga cgacgatgct ctacgagatg aagcgcaggg gcgcgcgccg cgggctggcg
     2761 gccctgtgcc tcggcggcgg caacgccgtg gcgctcgccg tcgagcgctg aggcaccgag
     2821 gcggcgggag agcaccggaa tgacgcccca ggatcacaac aaagtcctcg gcatcatgca
     2881 cctcatctac gggggcatga acgccatcct gctccccttc gtcttcatct tcgtcttcct
     2941 cggcgcgggc ctgacgagca tagacccgtc ggccccgccc gaggcgggcc tcgtcttcgt
     3001 cctcatcggg ctcttcttcg gcctgctctt cctcatgttc gggctgccgc cgcttttggc
     3061 cggctacggc atgctgaggc ggaagagttg ggcgcgcggg tggggaatcg ccgccgccgt
     3121 gttcgcggcc ctgagcttcc cgctggggac ggcgctctgc gtttatacgc tctggttcct
     3181 gctcggcaac gagggcaagg ggttctacga ggggcgggcg gactggcggc atcaggagtg
     3241 gcgcggctcg ctcggcgccg cgcggcagca aggctggggc gcgcagtctt cgacctacgg
     3301 gcggcaggcc gagtacgtgc cgcccccgca gccgccggac tggcggggcg atagctgaca
     3361 atggagtcaa aggcaagtgg ctgaagtgtt cggagtcgtc ggggccggga cgatggggag
     3421 cggcatcgcg caggtcgcgg cgcgctcggg ctacgatgtg gttctgcgcg acgtctccga
     3481 agagttcctc gcccgcggca tgagcacgat tgacaagagc ctccagcgcg acgtggacaa
     3541 ggagcgcctg aaggagggcg aaaagcgcga gatagtcggc cgcataagcg ccgtgacgga
     3601 cttgggcgcc ctctcggccg cctcgttcgt ggtcgaggcg ataaccgaga gcctcccggc
     3661 caagcaggag gtcttccgcg cgctcgacga ggcgtgcggc cccgaggcga ttctcgcgtc
     3721 gaacacctct tcaatctcaa tcacgaagct cggcgccgcg acccgccggc ccgacaaagt
     3781 catcggcatg cacttcatga accccgtccc cgtcatgaag ctggtcgagg tgattcgcgg
     3841 catcgccacc tcggacgaga cgtgggcgcg aacgcgggag ctcgcggagc ggatggggaa
     3901 gacggcgttg gagtgcaacg actcgcccgg cttcgtctcg aaccgcgtgc tgatgccgat
     3961 gattaacgag gccgtcttcg cgctctacga gggcgtcgcc acgcgcgagt caattgacgg
     4021 cataatgaag ctcggcatga accacccgat ggggccgctc acgctcgccg acttcatcgg
     4081 cctggacgtc tgcctcgcga tactgaacgt gctgcacgaa gagctgggcg acccgaagta
     4141 caggccgtgc ccgctgctca ggaagtacgt ggacgcgggc tggctcggcc gaaagtccgg
     4201 gcgcggcttc tacgaatatt gagcccggaa ggcgcttgga tgttgagtaa gcggcgtcaa
     4261 attcactgcc agaggtgcat ggccggcaac ccgctcgggc aggagctgtg cgggcgctgc
     4321 ggcacgcgcc tcatgctcgt cttcgagccg tcggtgcagc gcttcgaggg cggccacgtc
     4381 gcagagggcg gcctcgaaga gcacctcctc gagcgcatat ccgcgctcga aaatcacata
     4441 ctccgcctcg cagacaagct cgaacagacg ctcgacctcc tgctcaaaca ggcgcggacg
     4501 agctaccagg atcacgccct catcgagacg gtgattgacg cgctctccga cgccggctcg
     4561 ctcgaccgca aggcgctggg cgccctctgg cgccagcggc gcgagcgcga cgaggccgcc
     4621 catcagaaca ggtcgcgctg ctcggagctt cgcgcgcgct cactcgtcgc gcactccggc
     4681 cgcgagcgag ccgccttcac gcggctcgtc gacgagggct tcgacctcgt gcagcagggc
     4741 aagatcgccg ctggcgtgcg cgccctcgag cgcgcggcgc cgctttcgcc cgagaacgcg
     4801 cccctgaacg ccttcctcgg cgagcacttc ttcgccaagg gcaagaccgc gctcgcgcga
     4861 gactaccttg cgcgcgctca cgccgcagac ccggaagagg ggcgcgtgcg actcctgctc
     4921 gggctcgccg cggccgacga gggcgacgcc gagggcgccc gcgcgctcct gagcgaagcc
     4981 gtgaaccgcg gcggcccttc cttcgcagcg cattacgcgc tcggccggct cgctgccgcg
     5041 gaagggcgct gggaggctgc gctcgaagag ttcaagcgcg cgctcgccgc gcgcccctcg
     5101 cccgaggcgc attacctgct cgggctagcc aactacaggc tcgggcgcaa ccgaacggcg
     5161 ctccgccacc tctcgaaggc cgtggagatg gacgcgaagt acggcgaagc cttctacctc
     5221 atggggctcg cgcgcctgcg cgcgggcgag gcggagcttg cgggcgagtc cttcgacgcg
     5281 gcgctcgcct cggacgcggg cgaggcccgc tacagggccg cgcgcgagcg gctctcggag
     5341 cccgaccaaa tccccccgcc ctcgctcttg acggcggccg cgcgcggcag gcggcggctc
     5401 gtgaccggcg gcgacgagcg cctggcggcc gcccttcgtg acgacgcgct aggcggcccc
     5461 ccgccgcgtt gacactttcg ccccggcagc tataattgca gcttttgtgc tcaaagcgtt
     5521 tttgggcgcc gcccgcaccg gagggctgaa gtcgtgcgaa tcgaggtgga gagtcttacg
     5581 gaggcgggcc ggcccgtcga gtccgtgcac gagcctgggc ggctggattt ggaggacgag
     5641 caggttcgcc tcgtctcgcc ggcaaggctc gaagggcgcg cgcggcgcaa gggcgaggag
     5701 gttcgactgt cggggaagat aacggccgag gtcgagatag actgcgaccg ctgcctcacg
     5761 ccgacgcgag ctccgctcga agtcgagctc gacacctcct tcatcccgag cgaggtcgcc
     5821 gccggcgcgc ccgagaacgt ggagcttctg gccgaggaca tggggctcgc cgcctacgag
     5881 ggcggcgagg ttgacctgga cgagttagtg cgcgaacaga ttctgctcgc gctccccacg
     5941 cgccggctct gccgcgaaga gtgcagaggc ttgtgcccgc actgcggcgc cgatttaaac
     6001 gcgggcgact gctcgtgcga acgtggcgag gttgacccgc gctgggctgc cctcgccgat
     6061 ttgaagaagg acgaaaagac gtaggccgtc ttaagattca cgatttactt taaggagtta
     6121 tcatgccaaa tccgaaacgc cgacactcga aatcgcgcac gcgccagcgc cgcgcccacg
     6181 acgccttgcg cgccccgcag acgagcctct gccctaactg ccaggagccg cgcatgccgc
     6241 accgcgtctg cccgaagtgc ggccactaca aggggcgcga ggtcgtcaag gtagagcagg
     6301 acgtctaaga gccgcgcgcg gtagttacgt ccgatgaggc aaaggcaact gaccggcaaa
     6361 gtggtcgttg acgcgatggg cagcgaccgc gcgccgcacc ccgagattga cggggcgctc
     6421 gcggccgcgc gcgacttccg ggtgcgggta atactcgtcg ggcaggagga gcgcgtcgtg
     6481 ccggaattgc gccgctgcgg ctggcgcagg gacggcgaca agggcgtcga gttcgtagag
     6541 gcgcccgagt tcatcggcat ggacgaggcc gtcgccacgg ccgtccgccg caagcgccgt
     6601 agttcactcc gagtgggcgc gcgcctcgtc gccgacggcc acgccgacgg catggtctcg
     6661 gccggcaaca ccggcgccgc tatggctacg gccaagatgg tgataggcat gctacccggc
     6721 gttgaccggc ccgcgctcgc cgcgatgctc ccgtcgaagt ctgggcggcc gacgctcctg
     6781 ctcgacgtcg gggctaacgc cgactgcaag ccgattcaca tggcgcagtt tgctatcatg
     6841 ggcgacgctt acacgcgcgc ggttatgggg acgcagcgcc cctccgtcgg gctgatgagc
     6901 atcggcgagg aggaggctaa gggcaacgac ctgaccaagg aggcgttccc gctgctgcgc
     6961 gacctgtcga gcctgaactt cgtcggcaac gtcgaggggc gcgacgtgtt cacggggcag
     7021 gttgacgtga tagtgaccga cggcttcacg ggcaacgtta tcctgaagct ctcggaaggg
     7081 ttgcaggagg ccgtcgtctc gatgataaag cgcgagctga gcgcgacggt cataacgaag
     7141 acgggcgcgg tgctcgcgcg cccagcgttc cagaatttga agaagcgact cgactacgcg
     7201 gagtacggcg gcgcgccgct ccttggcgtg cgcagcgtcg tcgtcatagg ccacggcaac
     7261 tcgaacgcgc gcgccgtgcg caacgccatt cgcaacgtca aggagttctc cgagcgcggc
     7321 gcgatagccc gcatcgagag cggcgtcgcc gagacgaacg cgcgccagtc gagaccggcg
     7381 cgcgccgccg cggcctccga ctgaaaaagg catattcacc gatggcaaac accaacgctg
     7441 caataatcgg cacggggcga gcctacccgg agggcgtgct cacgaacgcc gacctcgaaa
     7501 agatggtaga gacctcggac gagtggataa cctcacgcac cgggataagg cagcgccaca
     7561 aggccgcgga gggcgagtac acctcgctct tcgccgtcca ggccgcgcgc caagccatcg
     7621 agcgggcgcg agttgacccg attgacatcg gcctcgtcat ctgcgcgacg gtcacgcccg
     7681 accagattct cccctcgacg ggctgcctga ttcaggccga gctgggctgc aacaaggccg
     7741 cggccttcga cctcgccgcc gcctgctccg gcttcctcta cgggctgacg gtggcgaacc
     7801 agatgatacg cacggggcag acgcgccacg cgctcgtcgt cggggccgag attctgacgc
     7861 gctacgttga ctacaccgac cgctccacct gcgtcatctt cggcgacggc gccggcgcgg
     7921 ccgtgctcgg cccggccgag gagggccggg gcatcctctc gacgcgcatc tactcagacg
     7981 gccgcttcgc cgagcagctc ttctcgcccg gcggcggcac gcgcatcccc cccacggccg
     8041 agacgctctc gcaggggctc cacttctaca agatgcgcgg caacgagctc ttcaaggtcg
     8101 cggtgcgctc gatggccgac gtttcgcgcg aggtgctcga agaggccggc tacaaggccg
     8161 acgacgtgaa gctcttcatc ccgcaccagg cgaaccagcg catcacggac gccgtcgcga
     8221 acaacctgaa ggttgactcc tcgattgtct attcgaacat cgagatgcac ggcaacacct
     8281 cctcggcctc catccccatc gcgctcgacg agtgcatcga gatgggccgg gtcaaggagg
     8341 gcgacctcgt cctgctcgcc tccttcggcg gcggcgtcac ctggggcggc gtgctgatta
     8401 agtggtagcc ggagagagta tgtcagtcgc tttcatcttt ccggggcagg ggtcgcaggc
     8461 gccgggcatg gggcgcgagc tggcggagcg gtatccggcg gcccgcgagg tcttcgagga
     8521 ggccgacgac gcgctcggct tcaagctctc cgagctgtgc ttcaacggcc ccgccgaaga
     8581 gttgcaattg acggagaaca cgcagccggc gattctggct acttcggtcg ctgcgctgcg
     8641 cgcggccgag tcggaaggct tcccgcggcc cgacttcgtc gcgggccaca gcctcgggga
     8701 atattcggcg ttggtcgcgg cgggcgccct cgaactgcgc gacgccgtgc gggtcgtgcg
     8761 caaccgcggc cgcttcatgc aggaggcagt ccccgtgggc gccggcgcga tggccgcgat
     8821 cctcggcgcc gacttggagg cggtcgaggc ggcgtgcgcc gaggcgaggg gcgagggcga
     8881 ggtttgcagc cccgcgaaca taaactcgcc ggggcagatc gtgattgcgg ggagcgcggc
     8941 ggcggtcgag cgcgccatcc cgctgctcaa ggctcgcggc gcgaagcgcg ctgtgccgct
     9001 caaggtgagc gcgccgttcc actgcgcgct gatgctcccg gcgcaggagc gcctcgccgc
     9061 ggagctcgaa ggaatggctt tcgcagacct cgccatgccg ctcgtcacga acgttgacgc
     9121 ggcgttgata cgcacgggcg ccgaggcgcg cgagtcgctg gtgcggcagg tctcgcagcc
     9181 ggtgcgctgg cgcgagtcgg tcgagctgct cgaccgcgag ggcgcgcgtg agttcgtgga
     9241 ggtcgggccg gggaaggtct tgagcgggct ggtgaggcag accgcgcggg aggcgcgctg
     9301 cctgaacgtc gaggacgtgt cgagcctcct cgccgcgcgc gcggagcttt cgggcggcgg
     9361 ccgcgcggcc tccggggacg gcgccggctg agtgtttacc gggttttcga gttttcaaat
     9421 cgcaacggag gagcaggaat aatggccgat caagagatcg agaataaggt gaagcagata
     9481 atcgttgacg agcttggcgt ggacgagaac gaggtgacgc ccaacgcgcg cttcattgac
     9541 gacctcggcg ccgactcgct cgacactgtc gagctcgtca tgcgcttcga ggaggagttc
     9601 ggcatcgaaa tcccggacga ggacgccgag aagattcaga gcgtccgcga cgcatacaac
     9661 tacatagacc agcacaagaa ggagtagcga cccttccgtc gcggcctcgc gtgaagggct
     9721 cgggcgccgc cgtcgggcgc gagggctttc ggccgggcgg ccgcggaaga gtcggcggcc
     9781 aggggcaatt ctccccaggg gggcacagct ttgaaacgtc gagttgtggt aacggggctc
     9841 ggcctcgtca cgccttgcgg ccacacggtg gccgacacgt ggtctgcgat gatggcgggc
     9901 cgcagcggcg tgggctacat tgagaagttc gacacgtcga agttctccgt caggatcggc
     9961 gccgaggtca agggcttcga cccgctcaag ttcatcgaga agaaggaggc gcgtaagatg
    10021 ggcgccttca tccacttcgc cgtgggcgca gcggacgagg ccgtctatga cagccagctc
    10081 gtcgagcgcg gccagaagat cactgaccgc tacggcgagg aggtgagctg gcgcgtaggc
    10141 acgtacatct cgagcggcat cggcgacttc tgggccatcg agcgcgagca ctccaagctc
    10201 ttggacgaag ggccgcaccg agtctcgcca ttcttcatcc cctcggcaat cgtcaacctc
    10261 gcggccgggc aggtctcgat acgcttcggg gcgcgcggcc cgaactcggc gacggccacg
    10321 gcctgctcgg cgggcgcgca cgccatcggc gacagcctca agataatcca gcgcggcgac
    10381 gcggacgtga tgatctgcgg cggggcggag tcggcgataa ctcccatggc ggtcgcgggc
    10441 ttcgccgcca tgcgcgccct ctcgacacgc aacgacgacc cgccccgcgc ctcgcgcccc
    10501 ttcgagcgcg accgcgacgg cttcgtcatc ggcgagggcg ccgggttact cgtcctcgag
    10561 gagctggagt tcgctcgcgc gcgcggcgcg aagatttacg cggagcttgt cggctacggc
    10621 ctgacgggcg acgccttcca catcaccatg ccggacgaga cggcctcggg cgccgtgcgc
    10681 gtgatgcaga tggccttgag ggacgcgggc gtttcgcccg aagaggtcgg ctacgtcaac
    10741 gcccacggca cgtccacccc gtacaacgac aagttcgaga cgctcgccat caagaagacc
    10801 ttcggcgagc acgcctacaa gctcgcggtc agctcgacga agtccatgac gggccacctg
    10861 ctcggcgcgg ccggcggcat cgaggcggtc ttctccgtcc tcgccattca cgaggggaaa
    10921 ctgccgccta caatcaacta cgtcaacccc gacccggagt gcgatctcga ctacgtgccc
    10981 aacgagtcgc gcgaggcgag catccggtac gcgctctcca acaacttcgg cttcggcggc
    11041 accaacgccg ccctgctctt caaacgctac gaggaatgaa aagcggcggc aaccagcttc
    11101 cggctatcag ttgaagacga atagccgaat gccgattgcc gttttgctga gagctatcaa
    11161 tgaaaatcgt cgtcttaatg aaacaggttc cgaacaagga cgcagtcctg cgcgtgaacc
    11221 gcgaggggaa gtggatagag gagggcgacc tctcgttcga ggtgaacgag tcggacggct
    11281 acgcgctcga agaggcgctc aggctcaagg agaagaaggg cggcgaggtc gt
//
LOCUS       DASPKR010000195         2582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_671725, whole genome shotgun sequence.
ACCESSION   DASPKR010000195 DASPKR010000000
VERSION     DASPKR010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2582)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2582
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671725"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1255)
                     /locus_tag="VD968_05375"
     CDS             complement(<1..1255)
                     /locus_tag="VD968_05375"
                     /inference="COORDINATES: protein motif:HMM:NF018449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SBBP repeat-containing protein"
                     /protein_id="HYE13857.1"
                     /translation="MTRANHPTLCLLCLLLLTAAAASPTVNSGNATAPPKTSNRPAAA
                     RPEGRRRALLDETYARLPLAFEPSPAKDGAPAGFVSRGRGYNLTLAPTEVALSRTGDA
                     GRRRAAPPLRMRLEGADPSARAEALGRLPGASNYLIGRDPSKWRTGVPQYARVRYDGV
                     YPGIDAIYYGNGRRLEYDFVLAPGADPRDITLRFEGARSVRVERGGDLVLLTGAGEVR
                     QLKPVIYQEVGGVRKEVPGRYVFKGARRIGFSVGAYDRERPLVIDPVLTYSVYLGGSN
                     ADSGNAIAVDEEGNAYVAGHTASLDFPTTPGAFQTSMRPLEGTSIYYSDAFVTKINPQ
                     GTAVLYSTYVGGSTTGDGGNGIDVDDEGNAYVVGVTGGGATSSGYAADFPLVNPWNPT
                     FEGSDSAFIFKLNPTGSALVYSTYIG"
     gene            1586..1927
                     /locus_tag="VD968_05380"
     CDS             1586..1927
                     /locus_tag="VD968_05380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13858.1"
                     /translation="MSDNPTQETHDSRSFEERVFARFDALDRRMGRFEERMAGFESRL
                     TSLEEKVDTRLRETWPIWESVQARRDGIETELKSISRGMILLHEDNLRIRIDQRDLRE
                     RVAKLEPERAR"
     gene            1993..>2582
                     /locus_tag="VD968_05385"
     CDS             1993..>2582
                     /locus_tag="VD968_05385"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HYE13859.1"
                     /translation="MFTGIIEELGRVRSLERRGEGVRMTIEARSVTEGTREGDSIAVN
                     GVCLTALDVRPGSFSADGSRETLQRSTLGGLRAGSVVNLERAVTPSTRLGGHIVQGHV
                     DARGRFLSAEEHGGSWTIRVAYPPGLARYLVFKGSVAVEGISLTVAALSDEHFEVAII
                     PKTWAATNLSHLRPGDAVNLEADIIAKYVERIMTAGR"
BASE COUNT          426 a          852 c          891 g          413 t
ORIGIN      
        1 cgccgatgta ggtggagtag acgagcgccg agcccgtcgg gttgagctta aagatgaagg
       61 cgctgtcgga gccctcgaac gtgggattcc aggggttgac gagcgggaag tccgcggcgt
      121 agccggacga ggtcgcgccg ccgcccgtaa cgccgacgac gtaggcgttc ccctcgtcgt
      181 ccacgtctat gccgttgccg ccgtcgcccg tggtgctccc gcccacgtag gtcgagtaga
      241 ggacggccgt gccctgcggg tttatcttcg tcacgaaggc gtcgctgtag tagatgctcg
      301 tgccttcgag cggtcgcata gaggtctgga aggcgccggg cgtcgtgggg aagtcgagcg
      361 aggcagtgtg gccggcgacg taggcgttgc cctcttcgtc aacggcgatg gcgttgccgc
      421 tgtcggcgtt cgagcccccg aggtaaaccg agtacgtgag cacagggtct atcaccagcg
      481 gccgctcccg gtcgtaggcc ccgacgctga agccgatgcg gcgcgccccc ttgaagacgt
      541 agcgccccgg cacctctttc ctcacgcctc ccacttcctg gtagatcacg ggcttgagct
      601 gacggacttc gcccgcgccc gtgagcagca cgaggtcgcc gccgcgctca acgcgcacgg
      661 agcgcgcccc ctcgaacctg agtgtgatgt ctcgcgggtc cgcccccggc gcgagcacga
      721 agtcgtattc gagccggcgc ccgttgccgt agtagatagc gtctatgccg ggatagacgc
      781 cgtcgtacct gacgcgcgcg tactgaggca cgccggttcg ccacttcgag gggtcgcggc
      841 ctatcaggta gttgctcgcg cccggcagcc gcccgagggc ctcggcgcgc gcggacgggt
      901 cggcgccctc aagcctcatg cgcaggggcg gcgcggcgcg tcgtcggccg gcatcgcccg
      961 tccgcgagag cgccacctcg gtcggggcca gcgtaaggtt gtagcctcgc ccgcgggata
     1021 cgaaccccgc gggcgccccg tctttcgcgg ggctcggctc gaaggccagg ggcaaccgcg
     1081 cgtaggtttc atcaagaagc gcccgccgcc gcccctcagg gcgcgccgcg gccgggcggt
     1141 ttgaagtctt cgggggcgcc gtcgcgtttc ccgaattgac tgtggggctg gccgccgcgg
     1201 cggtcagaag cagaaggcag agcaggcaca gggtcgggtg gttcgcgcgc gtcatgacgc
     1261 agcctttctc gggctaagga gtgcgggccg aggccctggg gggaagggaa ccccttttct
     1321 tgacggcaga ttgaatgggg agcgtcggtg acgacggtcg cgcgtagatt aacaccgagc
     1381 ggccttaaaa agctcgaaaa aatatcgggg ttggccgagc ggccgccttc ggcgtaacat
     1441 ttaccaagac accagcccgt cgcctccggg cgaataactt tcgctcccac ccacgaaccc
     1501 cgtttaaaac tgcgcgccga aggcgcaccg gccggcttgt gtgaacaggc cggaagtctc
     1561 ataattttac acaagggagc aggcgatgag cgacaacccg acgcaagaga cgcacgactc
     1621 ccgctcgttt gaggagcgcg tcttcgcacg cttcgacgcc ctcgaccgaa ggatgggcag
     1681 gttcgaggag aggatggccg gcttcgagag caggctcaca tcactggaag agaaagttga
     1741 cacgcggctg cgcgagacgt ggccgatctg ggagtcggtg caggcccggc gcgacggcat
     1801 cgagacggag ttgaagtcta ttagccgcgg catgattctc ctgcacgaag acaatcttcg
     1861 catacgcatt gaccagagag atttgcgcga gcgcgtcgcg aagctcgagc ccgagcgcgc
     1921 gcgctgagcg cggcggcgac cgctcggcca gaacttgaat ttcagaccgg gatcgtaagg
     1981 cccacccgac agatgttcac cggcataatc gaagagctag ggcgcgtgcg ctcgctcgag
     2041 cggcggggcg agggcgtgcg catgacgata gaggcgcgct ccgtgacgga aggcacgcgc
     2101 gagggcgatt ccatcgccgt caacggcgtg tgcctgactg cgctcgacgt gcggccgggc
     2161 tccttctccg ccgacggctc gcgcgagacc ttgcagcgct cgacgctcgg gggcctgcgc
     2221 gcgggctctg tcgtgaacct tgagcgcgcc gtcacgcctt cgactcgcct cggcggccac
     2281 atcgttcagg gccacgttga cgcgcgcggc cgcttcctct cggccgagga gcacggcggc
     2341 tcctggacga ttcgcgtggc ctacccgccc gggctcgcgc gctacctcgt cttcaagggc
     2401 tcggtcgccg tcgagggcat aagcctcacc gtcgccgccc tctcggacga gcacttcgag
     2461 gtcgccatca tccctaagac ctgggccgcg accaacctct cccacctgcg gcccggcgac
     2521 gccgtcaacc tcgaggcaga catcatcgcc aagtacgtcg agcgcataat gacggccggt
     2581 cg
//
LOCUS       DASPKR010000196         3344 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1060497, whole genome shotgun sequence.
ACCESSION   DASPKR010000196 DASPKR010000000
VERSION     DASPKR010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3344)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3344
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1060497"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1172)
                     /gene="radA"
                     /locus_tag="VD968_05390"
     CDS             complement(<1..1172)
                     /gene="radA"
                     /locus_tag="VD968_05390"
                     /inference="COORDINATES: protein motif:HMM:TIGR00416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HYE13860.1"
                     /translation="MAKAPATVYVCQSCGNQSRKWLGKCPDCGEWNSFVEGRARPAPA
                     AAKGMAARGGFRLREVKPVHYGEIESQTEARTTSGIGEFDRVLGGGIVPGSLILIGGD
                     PGIGKSSLLLQVADKLSAQGLRVLYVSGEESERQIKMRGERFGIEAANLYLLPETNLE
                     NILDEVERSGPGAIIVDSIQTVFSSKIESAPGSVSQVREVAGQFLMLAKNHTVPVFLI
                     GHVTKEGAIAGPKALEHIVDTVLYFEGERHHNHRIVRATKNRFGAANELGVFEMTGEG
                     LVPVANPSEMFLQERPVGAAGSVVTACMEGTRPVLVEVQALVAGSKYGTGRRMAQGLD
                     SNRIALLIAMLEKRLGFHLLGDDVFVNVAGGLEIDEPAADLGVVAAIASSFKSRAV"
     gene            complement(1312..1614)
                     /locus_tag="VD968_05395"
                     /pseudo
     CDS             complement(1312..1614)
                     /locus_tag="VD968_05395"
                     /inference="COORDINATES: protein motif:HMM:NF015893.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC/Spx/MgsR family protein"
     gene            complement(1684..2964)
                     /locus_tag="VD968_05400"
     CDS             complement(1684..2964)
                     /locus_tag="VD968_05400"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HYE13861.1"
                     /translation="MPQTTAAAPAAEELNPFKIAMRQFDTAADLLGLDEPMREVLKHA
                     KRQLIVSIPVKMDGGEVRVFEGYRVQHNIARGPAKGGIRFHPNVTLDEVKALAAWMTW
                     KCATVNIPYGGGKGGVVCDPKAMSKGELERLTRRYAFEIAPIIGPDRDIPAPDVYTDE
                     QTMAWIMDTISMVRGHTELGVVTGKPVSLGGSHGRGEATARGCLYAVREACRVRGLSL
                     HDARVAVHGFGNAGANFARLASAEAGARIVALCDSKAGVRNEHGIDVQAALRHKAETG
                     CVEGTPNTEAISCEDVAGVDCDILLPASLENLITLSNVGRVRASIIAELANGPVTPGA
                     DRELFDRGVTVLPDILANAGGVTVSYYEWVQDQYSYFWTEERVKETLENTMRTAFAHV
                     HATAERYKTDMRTGAYLLAIGRVSEATSVRGIFP"
     gene            3165..>3344
                     /locus_tag="VD968_05405"
     CDS             3165..>3344
                     /locus_tag="VD968_05405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13862.1"
                     /translation="MFSNLVESGSHAADLKRRGTFFAGTLAFYGLLLVTAGVGSIYAY
                     NATLGDDSGELEILAV"
BASE COUNT          523 a         1154 c         1065 g          602 t
ORIGIN      
        1 tcaaccgccc ggctcttgaa gctggaggcg atggcggcga cgacgcccag gtcggcggcc
       61 ggctcgtcaa tctcgagccc gcccgcgacg ttcacgaaca cgtcgtcgcc gagcaggtgg
      121 aagcccagcc gcttctccag catcgcaatc aggagcgcga tgcggttcga gtcgagcccc
      181 tgcgccatcc tgcgccccgt cccgtacttc gagcccgcga cgagcgcctg aacctccacg
      241 agcacggggc gcgtgccttc catgcaggcc gtcacgaccg agccggccgc gccaacgggg
      301 cgctcctgca agaacatctc cgaggggttg gcgacaggca cgagcccctc gcccgtcatc
      361 tcgaagacgc ccagctcgtt cgccgccccg aagcggttct ttgtcgcgcg cacgatgcgg
      421 tggttgtgat gccgctcgcc ctcgaagtaa agcaccgtgt caacgatgtg ctccaaagcc
      481 ttcggcccgg caatcgcgcc ctccttcgtg acgtggccga tgagaaagac ggggacggtg
      541 tggttcttgg cgagcatgag gaactggcct gccacctccc tcacctgcga gacagagccg
      601 ggcgcagact caatcttcga agagaagacg gtctggatgg agtcaacgat tatcgcgccg
      661 gggcctgagc gctcgacctc gtccagaata ttttcaaggt tggtctccgg cagcaggtaa
      721 aggttcgcgg cctctatccc gaaccgctcg cccctcatct ttatctgccg ctccgactcc
      781 tcgcccgaga cgtagagcac acgcagcccc tgcgcgctca gcttgtcggc gacctggaga
      841 agcaggctcg acttccctat gccggggtcg ccgccgatga gtatgaggct gcccggcacg
      901 atgcctccgc cgagcacgcg gtcgaactcg cctatgccgg aggtggtgcg cgcctcggtc
      961 tgcgactcaa tctcgccgta gtgaacgggc ttcacctcgc gcaggcggaa cccgccgcgc
     1021 gcggccatcc ccttcgccgc ggccggcgcg ggccgcgcgc gcccctcgac gaaagagttc
     1081 cactcgccgc agtccggaca cttgcccagc cacttgcgcg actggttccc gcagctctgg
     1141 cagacgtaaa cggtagccgg tgctttagcc aacttctcga cccttcctcg gacgaaactc
     1201 gcaccgattt taccagtccc gcgcccatca aggggcgcac aaaaaccgcc ggggcggcct
     1261 ctttcacttg acaagtctcg gcccgccggg ccgcgtttcc gggccgaaaa cctagagaat
     1321 ttcgcgtatt ttctcggcgg ggcgggccag gactgcgcgc gcgccgcgct cgacgatagg
     1381 gcgctgcaag agctccgggt gcttgacgag caggccgatg atctcgtcgc ccgacagctc
     1441 gcgccccgcc agcccaagct ccctgtacgc ggcctcattc ttccgcagaa gctcgcgcgg
     1501 ggagacgccc atcttcctta tcagctcgcg cagcttccgc tcgccgaccg gctccagaaa
     1561 gtagttgacc ttctcgtagt cgagcccgct ctcacggagc agacgatccg cctcgcggca
     1621 cgtcgttcac gtcggcttct cgtaaacggt tatcttgtcg tccatgcaaa gccctccctg
     1681 ccctcagggg aaaatcccgc gcacgctcgt cgcctcggag acgcggccga tggcgaggag
     1741 gtaggcgccg gtccgcatgt cggtcttgta gcgctcggcc gtggcgtgga cgtgcgcgaa
     1801 cgccgtccgc atcgtgttct ccagagtctc tttgacccgc tcttcagtcc agaagtagga
     1861 gtactgatcc tgcacccact cgtaataact gacggtgacg cccccggcgt tggcgagtat
     1921 gtcgggcagg acggtcacgc cgcggtcgaa cagctcgcgg tccgcgccgg gggtgacggg
     1981 gccgttcgcg agctcggcga tgatcgaggc gcggacgcgc ccgacgttcg agagcgtgat
     2041 gaggttttcg agcgaggccg ggagcagtat gtcgcagtca actcccgcca cgtcttcgca
     2101 gcttatcgcc tcggtgttcg gcgtaccctc gacgcagccg gtctcggcct tgtggcggag
     2161 cgcggcctgc acgtctatgc cgtgctcgtt gcggacgccg gccttcgagt cgcagagtgc
     2221 gacgatgcgg gcgccggcct cggccgaggc gagccgcgcg aagttcgcgc ccgcgttccc
     2281 gaagccgtga accgccacac gcgcgtcatg cagggatagg ccgcgcactc ggcacgcctc
     2341 gcgcacggcg tagaggcagc cgcgcgccgt cgcctcgccg cgaccgtgcg agccgcccag
     2401 tgagacgggc ttgcccgtga cgacgccgag ctccgtgtgg ccgcgcacca tcgagatggt
     2461 gtccattatc caggccatcg tctgctcgtc ggtgtaaacg tcgggcgcgg gtatgtcgcg
     2521 gtcggggccg atgatgggcg caatctcgaa ggcgtagcgt cgcgtcaatc gttccagctc
     2581 acccttggac atcgccttcg ggtcgcagac caccccgccc ttgccgccgc cgtaggggat
     2641 gttgacggtc gcgcacttcc aggtcatcca agcggcgagc gccttgacct cgtcgagcgt
     2701 gacgttcggg tgaaagcgta tgccgccctt cgcggggccg cgcgcgatgt tgtgctgcac
     2761 gcggtagccc tcgaagacgc gaacctcgcc gccgtccatc ttgacgggta tggagacgat
     2821 tagctgccgc ttggcgtgct tcaagacctc tcgcatgggc tcgtcgagcc cgaggaggtc
     2881 tgcggccgtg tcgaactgcc gcatggctat cttgaaaggg ttcagctctt cggcggccgg
     2941 cgcggccgct gtggtttgag gcatgtgcga tcctttcggc gcggcgtttc tttaggaacg
     3001 tcatcccccc gggctcgccc gccgcacatc ctaaaagttc cgggttatta gtttcaagct
     3061 ccgggttgag aaagtcactc tggaactttc acccgcggcg ggtgtctaaa cgcttgttgt
     3121 ctcccgctga cccgctggca ccggcttcga gggaggaaag ctcgatgttc agcaaccttg
     3181 tcgagtcggg gtcgcacgcc gccgacctga agcggagagg caccttcttc gcggggacgc
     3241 tcgccttcta cggcctgctg ctcgttaccg cgggcgtggg cagcatctac gcctacaacg
     3301 cgacgctcgg cgacgactcc ggcgagcttg agattctcgc cgtc
//
LOCUS       DASPKR010000197         8985 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_155148, whole genome shotgun sequence.
ACCESSION   DASPKR010000197 DASPKR010000000
VERSION     DASPKR010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8985)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8985
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155148"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            185..1027
                     /locus_tag="VD968_05410"
     CDS             185..1027
                     /locus_tag="VD968_05410"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HYE13863.1"
                     /translation="MHDRAMKLLQLETDLRRAIERKEFFLQYQPIVCLSTGRVRSFEA
                     LVRWQHPEHGLVNPSEFIPVAEETGLIVPLGQWVLGEACRQMRAWQVHHSLDESVTMA
                     VNLSSKQFSQADLLEQISSALRQTGLAPSALKLEITESMVMENIDTAIDTLERLRSLG
                     VELSIDDFGTGYSSLSYLHRFPINTLKIDRSFVTRMSDNAENAEIVRTIITLARSLEM
                     SVVAEGVERMEQLERLKALDCDLGQGFIFSRPVDERQARSLASVNFNELIGGREPASV
                     GLAA"
     gene            1051..1665
                     /locus_tag="VD968_05415"
     CDS             1051..1665
                     /locus_tag="VD968_05415"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE13864.1"
                     /translation="MQTTTIMAPYRTPHAAAPHELETARVLLRPFAEGDLDRLCLLTG
                     DPEVMRFIGEGRPLAREETARNLLNIMASFWRRGFGRWALVHKQSGALAGYCGLSASN
                     EEVGVELAYMLGREFWGRGLATEASRACLRYGFEGLGLEEIAALTMPGNIRSRRVLDG
                     LGMRLVGHAHFYGYDCVHYRMPRHDFRHDGSPYVARPLAPPREP"
     gene            1832..2707
                     /locus_tag="VD968_05420"
     CDS             1832..2707
                     /locus_tag="VD968_05420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13865.1"
                     /translation="MKNRSLARAAAALALALSMSAVALGDVIRLKDGQVIRGEIVAFR
                     DQQFTVLIGSGARGRRSRVTVYIEDIDSIEFDSAAGGAADSGAYDTAPAETARPQPTP
                     ARPEPTPQRQTERQPPTLGNAGGTTTGTARTNNTVTGTGAGMGSTPGGDRQTTPAAGG
                     EASAFFPVRVRVRADNSANGWTDSGLMVRKGQRLRITASGRVSLGLGRFSTPTGLPRV
                     MDTEKLMRNEPTGALIAVIGDDNDEFIFVGSGREFFATRDGRLFLGVNEGKLDDNTGT
                     YDALIEAEPVTAGGN"
     gene            2933..4183
                     /locus_tag="VD968_05425"
     CDS             2933..4183
                     /locus_tag="VD968_05425"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE13866.1"
                     /translation="MKNGSAARAAAAGLALTMALLLLPASLLTPPAASAQSRRTPPQA
                     PQKKNTRPEQKPEGQQGEEPVPQDVIQEAEVVKVATNIVNIEATVINKKTKQLVLGLK
                     KENFAVFENEVPKEITNFSTPDAPITVAVVLEYSQLGQLQAYYGSSGTDRTGMEEMLM
                     PTAMFLQRFIKPPHDYVSVIAYDMRPTPITDFTNDPQRINAVIGLLARNRPTSREANL
                     YDALKLALVGGRADSVVLENSESRTSEYAGMTSIQGRRRAIFLVTTGIDTFSKINYDE
                     ARRITQNAGIPLYIIGTGELFFKRYGDQMSPLDGLGGATDPGRMTMLQARNALTTFAR
                     ETGGEYFPITFPGQLSSALSTIDALMRNQYSLAFKPDERRDGKRRKLVVRVDVDGDGK
                     YDDKDFIVKARQFYNAPGDNAGKK"
     gene            complement(4272..5588)
                     /locus_tag="VD968_05430"
     CDS             complement(4272..5588)
                     /locus_tag="VD968_05430"
                     /inference="COORDINATES: protein motif:HMM:NF016232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding domain-containing protein"
                     /protein_id="HYE13867.1"
                     /translation="MARRKFRNQRHEPLSDRSFQEYLTTPAPQTSRSELTSLVRGGED
                     TYLELKVKLSNPERIAQSIVALANTGGGVIVFGVNDNLRVEGVDDPESVRDELVRICR
                     EDILPVVVPFIDIISFDNGLRVVALEVEPKRRPYRTRDGRFFLRVGAEKLEATREELS
                     ALLDEARPVGHENLLAVGAEVEDIDEAHLWSFVREFDAFDSSRAGRDYPTAEVLERDL
                     MLAVPAATGGRAERVAPTVAGLLLFGRDERVAELMPRASVHAARFAGASAQAPKVESA
                     VMTGNLHTLFESALRFVERYCDLWDARPRAFPGRADAGDAPVAARANYHRASVAEAVA
                     NALAHRDLALRDVETRLHVFDTHIEIANPRRSAGFAPAMQRAIRYGVPQRLNPQVSAV
                     FTSPAYGLRLPAGGLPMLLRESRLFSGRRPDVQTFNDEFRLRIYGA"
     gene            complement(5679..7358)
                     /locus_tag="VD968_05435"
     CDS             complement(5679..7358)
                     /locus_tag="VD968_05435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13868.1"
                     /translation="MAQLAALVWLKWALFRNSMRSRKAAVGQAASALGLAAALLLSLG
                     AAAGLGVASHFLASPEGAGEDGALAARDAFVFLFSLYTMAFVMWALVPLAMGGGSRFE
                     PGRMLLYPVSLGKLFAFDLLSDLTSLSAVFAVPAMLAMALGAGLATGSTPSALLVGAC
                     AVWFGMSLSKLLSAGVGAMMRRGRSRGETVLALLGALLGMAGALMGQLMPLMGRYVHY
                     LERARWTPPGAVASALTRGLAPGGAADLALALATLAAYAAVCALLAYRLARRAALGLG
                     GSAKRTAAAAREEAPGRAYTGWRLPLASDELSAVFEKEVRYAVRNAQLRVMALMAVGL
                     TIVIRVVPFGGRSGRGALELTPYAEGAGTVFSVLYIFMLVSPLTTNLFGYEAGGMRAF
                     VLAPVGRRLLLVGKNMALTLVSLALVAAGVVAGGVVFRDMTAGTLLFVVLTCAICAPL
                     FALFGNWLSTHFPKRAEFGKRMNRSGLAGFLLLPFFVAMLVPPAAAVVAGHFAQSHAV
                     KYVILAAFAIISVASYLLTLPAQARSLERRELEILEAVTGRGGEGDTRIMG"
     gene            8423..>8985
                     /locus_tag="VD968_05440"
     CDS             8423..>8985
                     /locus_tag="VD968_05440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13869.1"
                     /translation="MLQRFTTRCLLVLALALASLTAPRATSASASTRPAANSTNKSAA
                     SLRAKTRGRALWPGSRFTEADRARATRRGLRFIYSTALDEANFRIYGSDYLWCFYTVA
                     ESVRDAGVRAMARSMGAERARAWRRSHATLPEGADAQQVADFAFGGDAADSLGLRDER
                     LKREVRRAAARFTARDFLLFDPLTEPPP"
BASE COUNT         1510 a         3230 c         2939 g         1306 t
ORIGIN      
        1 gagtggttga cctgtagcca gcggccttcg agcgagacga cggccatgcc gatggtcgcg
       61 tagtcgaagg cgctgcggaa gcgctcttcg gagtcgcgca gcgcctgcat gtgctgctgg
      121 acttcgagcg cgtgctcgcg ccaagctcct cggcaagaag cgccacgtcg tcttcgataa
      181 ggcgatgcac gaccgcgcga tgaagctcct gcaactcgag acagacctgc gccgcgccat
      241 cgagcgcaag gagttcttcc tacagtacca gcccatcgtc tgcctctcga cgggccgggt
      301 gcgcagcttc gaggctctcg tgcgctggca gcaccccgag cacgggctcg tcaacccgag
      361 cgagttcata cccgtcgccg aggagacggg cctcatcgtc ccgctcggcc agtgggtctt
      421 gggcgaggct tgcaggcaga tgcgcgcctg gcaggttcac cactcgctcg acgagagcgt
      481 gacgatggcc gtcaacctct cctcaaagca gttctcgcag gccgacctgt tggagcaaat
      541 ctcctccgcc ctgcggcaga ccggcctcgc gcccagcgcc ctcaagctcg agataaccga
      601 gagcatggtg atggagaaca tagacaccgc cattgacacc ctcgagcgcc tgcgctcgct
      661 cggcgtcgag ctctcgattg acgacttcgg caccggctac tcttcgctct cctacctcca
      721 ccgcttcccc atcaacaccc tgaagataga ccgctccttc gtcacgcgca tgagcgacaa
      781 cgccgagaac gccgagatag tgcgcacgat aatcacgctg gcgcgcagcc tcgagatgag
      841 cgtcgtggcc gagggcgtcg agaggatgga gcagctcgaa cggctcaagg cgctcgactg
      901 tgacctcggc cagggcttca tcttctcgcg gcccgtggac gagagacagg cgcgctcgct
      961 cgcctccgtt aacttcaacg agcttattgg cgggcgcgag cccgcctccg tcgggctcgc
     1021 cgcctgacgc gcggagcggc aaagccagtc atgcagacga ccacgatcat ggccccctac
     1081 cggacgcccc acgcggccgc cccgcacgag ttggaaacgg cgcgggtgct gctgcggccc
     1141 ttcgccgagg gcgacctcga ccgcctctgc ctcctaaccg gcgaccccga ggtgatgcgc
     1201 ttcataggcg agggccgccc gctcgcgcgc gaagagaccg cgcgcaacct tctgaacatc
     1261 atggcgtcgt tctggcgccg cggcttcggc cggtgggcgc tcgtccacaa gcagtcgggc
     1321 gcgctcgcgg gctactgcgg tctctcggcc tccaacgagg aggtcggggt cgagctggcc
     1381 tacatgctgg gcagggagtt ctggggccgc gggctagcca ccgaggcctc gcgcgcgtgc
     1441 ctgcgctacg gcttcgaggg gctgggcctc gaagagatag cggcgctgac gatgcccggc
     1501 aacatcaggt cgcgccgcgt cctcgacggc ctcggcatgc gcctcgtcgg ccacgcccac
     1561 ttctacggct acgactgcgt ccactaccga atgccccgcc acgacttccg ccacgacggc
     1621 tcgccctacg tcgcccgccc cctcgcgccc ccccgcgagc cttaagcgcg cccgaagccg
     1681 cgcacgcctc ccttcccctt ccgggcaacc cgcagcgcgc ccccggccat ccatccgctc
     1741 gggttttgtc gccgctctcc cgcttgccaa agcacgcccg tctctggtag atgtgcaggt
     1801 agcaacgccc gccgtttgtc tgggaggaag catgaaaaac cgtagtctcg cgcgcgcggc
     1861 cgcagccctc gcgctcgccc tgtccatgag cgccgtggcg ctcggcgacg tgatacgcct
     1921 caaggacggg caggtgattc ggggcgagat agtcgccttc cgcgaccagc agttcacagt
     1981 cctcataggc agcggcgcac gcggccgccg cagccgcgtg accgtttaca tcgaggacat
     2041 tgactccatc gagttcgact cggcggcggg cggcgcggcc gactccggcg cctacgacac
     2101 ggcgcccgcc gagacggccc gcccgcagcc cacgcccgcg cgccccgagc cgaccccgca
     2161 gcgacagact gagcgccagc cgcccacgct cggcaacgcc ggcggcacga ccaccggcac
     2221 cgcgcgcacc aacaacaccg tgacggggac gggcgccggg atgggctcga ctccgggcgg
     2281 cgaccgtcag acgacgccgg cagccggggg cgaggcgtcg gcattcttcc ccgttcgcgt
     2341 gcgtgtgcgg gccgacaact ccgcgaacgg ctggactgac tccgggctca tggttcgcaa
     2401 gggccagcgc ctgcggataa cggcctcggg ccgcgtctcc ctgggcctgg gccgcttttc
     2461 gacgccgacg ggcctgccgc gcgtgatgga caccgagaag ttgatgcgca acgagccgac
     2521 cggcgcgctc atcgccgtca tcggcgacga caacgacgaa ttcatcttcg tcggctcggg
     2581 ccgcgagttc ttcgctacgc gcgacggccg cctcttcctc ggcgtcaacg agggcaagct
     2641 cgacgacaac accggaacct acgacgccct catcgaggcc gagcccgtca ccgcgggcgg
     2701 caactgaaaa gcgtcgggga cgggcgctaa actccgggcg gccggtcggg gcgcgtagcc
     2761 tccgaccggc cgccttttta cccgccccgc gactaaacct ttagaggcgg cccggcatcc
     2821 aaccacagtc ctcatttttg gtttgaccgc gcgcgaggcg cgccgtatag ttcggggcgt
     2881 aactccccgg aaacgcgcct tcggccttcc ccgtacagag gtttttgtcg ctatgaagaa
     2941 cggttcagca gcacgcgccg ccgccgcggg cctcgccctc acgatggccc tactcctgct
     3001 cccggcctcc ctgctcacgc cgccggctgc cagcgcgcag tcgaggcgca ccccgccgca
     3061 ggccccgcag aagaagaaca cgcgccccga gcagaagcca gaaggccagc agggcgagga
     3121 gcccgtcccg caggacgtta tacaggaggc cgaggtcgtc aaggtcgcca cgaacatcgt
     3181 caacatagag gcgaccgtca tcaacaagaa gacgaagcag ctcgtgctgg gcctcaagaa
     3241 ggagaacttc gccgtcttcg agaacgaggt gccgaaggag ataaccaact tctcgacgcc
     3301 cgacgcgccc atcacggtcg cggtcgtcct ggagtacagc cagctcggcc agctacaggc
     3361 ttactacggc agcagcggca cagaccgcac cggcatggag gagatgctca tgccgacggc
     3421 gatgttcctt cagcggttca ttaagccgcc gcacgactac gtctccgtca tagcctacga
     3481 catgcggccg acgccgataa ccgattttac gaacgacccc cagcgcatca acgccgtcat
     3541 cggcctgctc gcgcgcaacc ggcccacgtc gcgcgaggcg aacctctacg acgcgcttaa
     3601 gctggcgctc gtcggcggca gggccgactc cgtcgtgctc gagaactccg agtcgcgcac
     3661 ctcggagtac gccggcatga cctcgataca gggccgccgc cgcgccatct tcctcgtcac
     3721 caccggcata gacaccttca gcaagatcaa ctacgacgag gcgcgccgca tcacgcagaa
     3781 cgcgggcata ccgctctaca tcatcgggac gggcgagctc ttcttcaaga ggtacggcga
     3841 ccagatgagc ccgctcgacg gcctgggcgg cgccacagat cccggccgca tgacgatgct
     3901 acaggcccgc aacgcgctga ccaccttcgc gagggagacg gggggcgagt acttccctat
     3961 aaccttccct ggccagttgt cgtcggcact gagcacgata gacgcgctga tgcgcaacca
     4021 gtacagtctg gccttcaagc ccgacgagcg ccgcgacggc aagcgccgca agctcgtcgt
     4081 tagggttgac gttgacggcg acggcaagta cgacgacaag gacttcatcg tcaaggcccg
     4141 ccagttctac aacgcgcccg gcgacaacgc cggtaagaag taggcagaag gcacccagaa
     4201 gaaccgaagg cggccggtta cgcattaacc ggccgccttc gttttctgtc tgccttctgc
     4261 ttactttatc gtcacgcccc gtaaatgcgg aggcggaact cgtcgttgaa ggtctgcacg
     4321 tcgggcctgc ggcccgagaa gaggcgcgac tcgcgcagga gcatgggcag gccgcccgca
     4381 gggagccgta gcccgtaggc cgggctggtg aagacggccg aaacctgcgg gttcaggcgc
     4441 tgcggcacgc cgtagcgtat ggcgcgctgc atggcgggcg cgaagcccgc gctgcggcgc
     4501 gggttcgcga tctcgatgtg cgtgtcgaag acgtgcaggc gcgtctcaac gtcgcgaagc
     4561 gccaggtctc tgtgcgcgag cgcgttcgcg acggcctcgg cgaccgaggc ccggtggtag
     4621 tttgctcgcg cggctaccgg cgcgtcgccc gcgtcggcgc gtccggggaa ggcgcgcggg
     4681 cgcgcgtccc agaggtcgca gtagcgctcg acgaagcgca gggccgactc gaagagcgtg
     4741 tgcaggttgc cggtcatcac ggccgactcg accttcggcg cctgcgcgct cgcgccggcg
     4801 aagcgcgcgg cgtgcactga ggcgcgcggc atcagttcag ccacgcgctc gtcgcggccg
     4861 aagagcagga ggcccgcgac cgtgggcgcg acgcgctcgg cccgaccgcc cgtcgcggcc
     4921 ggcaccgcga gcatcaggtc gcgctcaagc acctcggcgg tcgggtagtc gcggccggcg
     4981 cgcgacgagt cgaaggcgtc gaactcgcgc acgaagctcc acaggtgcgc ctcgtctatg
     5041 tcctcgacct ctgcgccgac ggccagcagg ttctcgtggc ccacggggcg cgcctcgtcc
     5101 aagagcgccg agagctcctc gcgcgtcgcc tccagcttct cggcgccgac gcgcaggaag
     5161 aagcgcccgt cgcgcgtgcg gtacggccgc cgcttcggct cgacttcgag cgcgactacg
     5221 cggagcccgt tgtcgaaaga gatgatgtct atgaagggga cgacgacggg caggatgtcc
     5281 tcgcggcaga tgcgcaccag ctcgtcgcgc accgactcgg ggtcgtccac gccctcgacg
     5341 cggaggttgt cgttgacgcc gaagacgatg acgccgccgc ccgtgttggc gagcgcgacg
     5401 atgctctggg cgatcctttc ggggttggag agcttgacct tcagctcaag gtacgtgtcc
     5461 tcgccgccgc gcacgagcga cgtaagctcc gagcgcgatg tctgcggcgc gggcgtggtg
     5521 aggtactcct gaaaagagcg gtcggagagc ggttcgtgtc gctggttgcg gaattttctg
     5581 cgagccattt gtgtagtggc ggcgctctcc ccaaccgccc gggcgcgcga gagttgcccc
     5641 gcgcgtcact ggattcggag acgggttaat aacccgtctt accccatgat tcttgtgtcg
     5701 ccctcgccgc ccctgcccgt cacggcctcg agtatctcca gttcgcggcg ctctagcgag
     5761 cgcgcctgcg ccggcaatgt cagcaggtac gatgcgactg agatgattgc gaacgcggcg
     5821 agtataacat atttgacggc gtggctctgc gcgaagtggc cggccacgac ggccgcggcc
     5881 ggcggcacga gcatcgccac gaagaagggc agcagcagga agcctgcgag gcccgagcgg
     5941 ttcatgcgct tgccgaactc ggcgcgcttc gggaagtgcg tcgagagcca gttgccgaac
     6001 agtgcgaaga gcggcgcgca gatcgcgcac gtgagcacga cgaagagcag cgtccccgcc
     6061 gtcatgtccc tgaacaccac cccgcccgcg accacccccg ccgcgacgag cgcgagcgag
     6121 acgagcgtga gcgccatgtt cttccccacg agcaggagcc tccggcccac gggcgccagc
     6181 acgaaggcgc gcatcccgcc cgcctcgtag ccgaacaggt tcgtcgtgag cggcgagacg
     6241 agcatgaaga tgtagagcac gctgaagacg gtgcctgccc cctcggcgta gggcgtaagc
     6301 tccagggcgc cgcgcccaga cctgccgccg aacggcacca cgcggatgac tatcgtcagc
     6361 cccaccgcca tcaaggccat cacgcgcaac tgcgcgttgc gcacggcgta gcgcacctcc
     6421 ttctcgaaga cggccgaaag ctcgtccgac gccagcggca ggcgccagcc cgtgtacgcg
     6481 cgccccggcg cctcttcgcg cgcggccgcc gccgtcctct tcgccgagcc gccgagcccg
     6541 agcgccgcgc gccgcgcgag cctgtaggcg aggagcgcgc agaccgcggc gtaagccgcg
     6601 agcgtcgcga gcgcgagcgc caggtcggcg gcgcctccgg gcgcgagccc gcgcgtgagc
     6661 gccgacgcga cggcccccgg cggcgtccat cgcgctctct caagataatg cacgtagcgc
     6721 cccatcagag gcatcaactg tcccatcagc gcgcccgcca tccctagcag cgcgccgagg
     6781 agcgcgagca ccgtctcgcc gcgcgagcgc ccgcgcctca tcatcgcgcc gacgcccgcc
     6841 gacaggagct tcgacagcga catcccgaac cagaccgcgc acgcgccgac cagaagggcg
     6901 gacggcgtgc tgcccgtcgc gagccccgcg cccagcgcca tcgccagcat cgccggcacg
     6961 gcgaagacgg ccgaaaggct cgtaaggtcg ctcagcaggt cgaaggcgaa gagcttgccg
     7021 agcgagacgg ggtagagcag catgcgcccc ggctcgaagc ggctgccgcc gcccatcgcc
     7081 agaggcacta gcgcccacat cacgaaagcc atcgtgtaga gcgagaacag gaacacgaag
     7141 gcgtcgcgcg cggccagcgc gccgtcctcg cccgcgccct ccggcgacgc gaggaagtgc
     7201 gaggcaacac cgagccccgc cgccgccccg agcgacaaaa gcagcgcggc cgcgagcccc
     7261 agcgccgaag ccgcctgccc cacggccgcc ttccgcgacc tcatcgagtt cctgaacagc
     7321 gcccacttca accacaccag cgccgccagt tgcgccattc gctaattccc cgctgcccgc
     7381 cctgccgcgg ctggcaacat gataaaagtt tggctgcccg cccgccgcaa ttaagcggta
     7441 taatccacgg caatcacggg acgcctcgct ctttgaagag taagttgttc gacgactaag
     7501 gagacaacta tgagaaatat acgcctcacg aaccgcctcc gccacttgct gtgcatgagc
     7561 gtcctcgtca tcaacgccgg ttgccaagcc tgccccccac gacccgatcg ggagccgcga
     7621 cccgtagaat ctccacaaca ggcagaacag cggcccgtaa cgtatgcgac ggggacaccg
     7681 acgcctgcga ctcccgccgt ctgtacgatt gggctgaacc cggcggctgg ccccataccc
     7741 cagggggggg cgccgccgtt acgcgtcggc gtggacacca gtccggggtg taccgtaagg
     7801 cttgacgggc cgcccatcgt cgtgccgccc gggtcattca atggaacctg cgtgcagctt
     7861 cccgccacgc cggccaacag catcgctgtc acttgtcccg gggtgcctgc gccagcgaac
     7921 ccaccggcgg cagcactggg gcttacgttc aaatgccaat gccctccggg ggtcggcttg
     7981 ggtgataaca ccgtgttcgc cacatacctt ttctgacgtg gtggagaccg gagccggtct
     8041 cgcggccggc gtgaatacat aaagaggaac ggttgaatgg cagcgcccgg tcgggccgcc
     8101 taactctcga tgcgggttgt cactcaacta ctcctcggcg ccagtggtcg cggcgtagat
     8161 atacgtgggc ttcgccgtag tcggcggcgc gtctggccgc cggttggccg tcgaagcggt
     8221 cggggcggct gcctccgcgc cggttgcgct gctggggttg agggtttcgg cgtgcgcgct
     8281 ggcgctcggt tgggcggggt acgcgggacg ggacgcgctg ctgcacgggt tcgctgatgt
     8341 cgccttcgtc cccggctggt aggcgggagc ctgtgccggc ttcgacctgt gcctcgcggc
     8401 ctacatcgcc gcgcgcttta gcatgctaca gagattcacc acaaggtgcc tgctcgtctt
     8461 ggccctcgcg ctggcgtccc tgacggcgcc ccgtgcgaca tcagcttcgg cgagcacgcg
     8521 ccccgccgcg aattcaacca acaagtcagc agcctccctt cgcgctaaga cgcgggggcg
     8581 tgcgctgtgg cccggctcgc gcttcaccga ggcggatcgc gcgcgggcga cgcgccgggg
     8641 gctgcgcttc atctactcga ccgcgctcga cgaagcgaac ttccgaatct acgggagcga
     8701 ctacctctgg tgcttctaca ccgtcgccga gagcgtgcgc gacgcaggcg tgcgcgcgat
     8761 ggcgcgcagt atgggcgcgg agcgtgcgcg cgcgtggagg cgctcccacg ccactctgcc
     8821 cgaaggcgcc gacgcgcagc aggtcgcgga cttcgccttc ggcggcgacg cggccgacag
     8881 cctcggcctg cgcgatgaga ggctgaagcg ggaagtccgc cgcgccgccg cacggttcac
     8941 ggcccgcgac ttcctcctct tcgacccgct cacggagcca ccgcc
//
LOCUS       DASPKR010000198         7316 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_931203, whole genome shotgun sequence.
ACCESSION   DASPKR010000198 DASPKR010000000
VERSION     DASPKR010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7316)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7316
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_931203"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            230..733
                     /locus_tag="VD968_05445"
     CDS             230..733
                     /locus_tag="VD968_05445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13870.1"
                     /translation="MRRTLYGSVVVFFYLLAAPARAQTEQPLPTPARQGEAAAPADLS
                     ITARVTARELRFEKVPQPRVEFTGRPRRDTVWEAERENLPEQVQPGVTYRDIGITLRI
                     TSVFADIDRIVAEALGEIPVSDDGGPTENERPAAEPPQPPAQSSRSATAPRTRPRRAA
                     ARNGRQR"
     gene            730..1116
                     /locus_tag="VD968_05450"
     CDS             730..1116
                     /locus_tag="VD968_05450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13871.1"
                     /translation="MRRAHGSLFIHAAAAALFVLAASLCASAQATVAAPAAGAQRARA
                     DEDFELNIEARRITEAGFSASTEAEAGREGGLRVRVGVMVSAVQIDVLLRNVRGRVRF
                     RADLGPVARLLDARRAATEEARPPER"
     gene            1136..2101
                     /locus_tag="VD968_05455"
     CDS             1136..2101
                     /locus_tag="VD968_05455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13872.1"
                     /translation="MKKPFVPLAALALALCASAARAQETSTTNSGDRDASITASTTTG
                     LRQSGQQQQPRPTPSPAAPVRPLSQEDLRRQQAASERRRQSAQTGDPDVLLDVPNLSV
                     EEITLKVKNLRARVSLDARLANLLQLTAGAEAGIDEVDLTIKGVRAELLLKVYLDNVA
                     AIIDRTLTTVDRNPQILERLLQSVDNTVGTVGGVANTALQPGGVVDRTVGTVGQTLNN
                     VTQPGGLLSQTVNTLGQTVQRVVDRSGNIVERTLDAAGTVVNQRTVGNVSSLVVQGET
                     TNAAGQTLRRVLDTSGAVIELTLDAAGRVVNSRVVSQATGTRPQQ"
     gene            2340..2978
                     /locus_tag="VD968_05460"
     CDS             2340..2978
                     /locus_tag="VD968_05460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13873.1"
                     /translation="MIARLNLASNPFRNRTLPWAVAAVVSVLSLLAIVYVLAGYRRVS
                     AETAAAERQVQTLRAERDDLKRQAAEIRQSIPEEQARTLEAAHTLVDRKSFSWSQLFS
                     DLEGSLPSTVRVSRISVRDVSQYGEQTRADLDLTVVGRAPTDVTGMIAEMSRQGVFSA
                     IPVSESQKTGRGESGFEWLLRVNYVQRSRVRAGEGGGEVGEAAAPGAERGRE"
     gene            2981..3796
                     /locus_tag="VD968_05465"
     CDS             2981..3796
                     /locus_tag="VD968_05465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13874.1"
                     /translation="MRDDSAITRASGGARQKDLRARFEHFRGSRRRSALGLAEVGALG
                     AAALLLLGAVLSYLFLLVPQRSRQQSLAAERESLQRQLMGERANFTERQSTQESVREI
                     LSSLERFEMKNLGPASSGVKTVYEELNRLILKNKLRISGGINYTQLQETAPGQPAQQR
                     GGARQQQEGGARVVESIFPGIGVTLTVEGAYANLRRFIRDIESDPRQFVVINTIELEG
                     VTDSNSGASVASQALPGDGTTPAAPATPGVRGSTLVSLRLDMAAYFRRAASGL"
     gene            3831..4757
                     /locus_tag="VD968_05470"
     CDS             3831..4757
                     /locus_tag="VD968_05470"
                     /inference="COORDINATES: protein motif:HMM:NF013955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIG domain-containing protein"
                     /protein_id="HYE13875.1"
                     /translation="MALFEGKTPAERNKMIAGVVLPLVALVFVVRMLSGSGPAKPANP
                     PKATPSPRAGAAARQAEQQPEETIFDRALTPLPDLAYGAYGGGDAGRNIFAFYERPVV
                     VKPPVEEATPTPTPEPPPPLVLASLSPQSVFARTAGFTLQVSGDKFTPATRVYLDSQE
                     LQTQYRSPQQLTATVPAALIAQQGQRTVVVRTPDNVLFSNNQALNVMQPPAPTYTFVG
                     LLKRARFNTAVLKDQKGELYSVRAGDLVEGRFRVTEISERSVELVDKDLNVRHTMPFV
                     ETRSLGATGGRVPGSIQPPPPPPSDDDGDDEP"
     gene            4754..5431
                     /locus_tag="VD968_05475"
     CDS             4754..5431
                     /locus_tag="VD968_05475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13876.1"
                     /translation="MTENDRMKADAESHKDRRAHPRGQRGYALVALLALMTVLMITAM
                     SVAPSMRQQSRRERELEAIRRGEEVAEGIRRFIHYKGVPPTSMEELLEGAPVGTKKVK
                     VIRASSARDPLTESGEWKLVKENDRALITFIQELTKYTEGRPPQPLNPFERNPAMAGI
                     AQRLPRVMNILDTGSGLGAPGGGEDSSLDSKGPFIGVVSRSERESIIAYYGIERHDGW
                     IFTPFFR"
     gene            5680..5814
                     /locus_tag="VD968_05480"
     CDS             5680..5814
                     /locus_tag="VD968_05480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13877.1"
                     /translation="MATKKAGKGGSKKGGSKGGSKGGSKGGSKGGSKKGGSKGGSKKR
                     "
     gene            6049..6516
                     /locus_tag="VD968_05485"
     CDS             6049..6516
                     /locus_tag="VD968_05485"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002318096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008175 - tRNA methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HYE13878.1"
                     /translation="MISVALVEPEIPPNTGNVARLCAATRTPLHIVGATGFRLDDRAV
                     RRAGLDYWPEVELHRQRDLDALAAALPGARFLYLTTKAERSYADWGFAEDDCLVFGRE
                     TRGLPEELLRANRERCLRIPVLNPRVRSLNLATAVAVVLYEALRQTGRLGGAG"
     gene            6646..>7316
                     /locus_tag="VD968_05490"
     CDS             6646..>7316
                     /locus_tag="VD968_05490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HYE13879.1"
                     /translation="MEREDVRNIAIIAHVDHGKTTLVDAMLRQSGTFRENEQVVERVM
                     DSMDLERERGITIMAKNTSVRYGGVKINIVDTPGHADFGGEVERVLKMVDGVMLLVDA
                     AEGCLPQTRFVLRKALEARLPAIAVVNKIDRQDARPEEVVNEIYDLFIDLDATDEQID
                     FPILYAVSREGVAKKNIEDESSSLRPLFDEIVRTIPPPRQLRDDSLQMLVANLDYNEY
                     VGRLA"
BASE COUNT         1318 a         2552 c         2431 g         1015 t
ORIGIN      
        1 cggccctcta ccgcgcgaag aacacgggcc gcaaccgcgt cgtcgcatac tgcgtctccc
       61 ctcccgagct tcggcccggc ccctcggcgc cgcgcggcga gcgctgaagc cgtcttgccg
      121 agcccgacaa atctgctatc ctacggccgc ttcagaaatt ccccttaaaa attcccccga
      181 gaccaggggt ttgccgcgac cctgtcgcgg ccgaggttcg cgaaggatgt tgagaaggac
      241 gctgtacggc tccgtcgtcg tcttcttcta tctgctcgcg gcgccagcgc gggcgcagac
      301 tgagcagccc ctgcccacgc ccgcaaggca gggcgaggcg gccgcgcccg cagacctctc
      361 tatcacggcg cgcgtgacgg cgcgagagct gcgcttcgag aaagtcccgc agccccgcgt
      421 ggagttcaca ggccgcccgc gccgagacac ggtctgggag gccgagcgcg agaacctgcc
      481 cgagcaggtt cagcccggcg tcacctaccg cgacatcggg atcacgctcc gcatcacgag
      541 cgtcttcgcc gacattgacc gcatcgtcgc cgaggcgcta ggcgagattc ccgtgagcga
      601 cgacgggggg ccgaccgaga acgagcggcc ggccgcggag cccccgcagc cgcccgcgca
      661 gtcgagccgt tccgcgacgg cgccgcgcac gcggccgcga cgcgccgccg cgcgcaacgg
      721 gaggcagcgt tgagacgcgc gcacggcagt ctcttcatcc acgccgcggc ggccgcgctt
      781 tttgtgctcg ccgcgagcct ttgcgcgtcg gcgcaggcga cggtagcagc gcccgcggcc
      841 ggcgcgcagc gcgcgagagc cgacgaagac ttcgagctga acatcgaagc gcggcgcatc
      901 accgaggcgg gcttctcagc ctcgaccgaa gcggaggccg gccgcgaggg cggcctgaga
      961 gtccgcgtcg gcgtgatggt gagcgccgtt cagatagacg ttctgctcag gaacgtgcgc
     1021 gggcgcgtgc gcttccgcgc cgacctcggc cccgtcgcgc gactcctcga cgcgcgacgc
     1081 gcggccacag aagaagcccg acccccggaa cgttgaaacc ctttcggagg agaaaatgaa
     1141 gaagcccttt gtacctttag cggccctcgc gctcgcgctc tgcgcttcgg cggcgcgcgc
     1201 gcaggagacg agcaccacca acagcggcga ccgcgacgcc tcgataacgg ccagcacgac
     1261 gacggggctc aggcagtccg gccagcaaca gcagccgcgc ccgacgccct cgcccgccgc
     1321 gccagtccgc ccgctctcgc aggaagacct gcgccggcag caggccgcga gcgagcgccg
     1381 ccgccagtcg gcgcagaccg gcgacccgga cgtgctgctg gacgtgccga acctctcggt
     1441 cgaggagata acgctcaagg tgaagaacct gcgcgcgcgc gtctcgctcg acgcgcggct
     1501 cgcgaacctc ctgcaactga ccgcgggcgc cgaggccggc atagacgagg ttgacctgac
     1561 cattaagggc gtgcgcgccg agttgctact caaagtctat ctcgacaacg tcgcggccat
     1621 catagaccgc acgctcacga ctgttgaccg caacccgcag atactcgaac gactcctcca
     1681 gagcgttgac aacacggtcg gcacggtcgg cggcgtcgcc aacacggcgc tgcaaccggg
     1741 cggcgtcgtt gaccgcacgg tcgggactgt cggccagact ttaaataacg tcacgcagcc
     1801 cggcgggttg ttgagccaga cggtgaatac tttgggccag accgtgcagc gcgtcgttga
     1861 ccgctccggc aacatcgtag agcgcacgct ggacgcggcc ggcaccgtgg tcaaccagcg
     1921 cacggtcggc aacgtctcct cgctagtggt gcagggcgag acgacgaacg ccgcgggcca
     1981 gacgctgcgc cgcgtgctcg acaccagcgg cgccgtcatc gagctcacgc tcgacgcggc
     2041 cggccgcgtc gtcaactcgc gcgtcgtgag ccaggccaca ggcacgcgcc cgcagcagta
     2101 gaggggaggg ggacggcgag aaggcagggc ggcgcgggcg gccccggagg ttagccgggg
     2161 ccgcccgcgc cgcccttaac ttttacgcgc gccctcccgg cttttctgca accgcgcggc
     2221 cccgtgcgcg tgtaatcgcc ggggtaagtg cggttgcgcg gtggcggcgc gcggggtatg
     2281 ctttccttcg tcaaggtgga agccctcgac gcgtctgccc ctcccctcgg gaaacataag
     2341 tgatcgcaag gctcaatctc gcaagcaacc cgttccgcaa ccgcacgctg ccgtgggcgg
     2401 tggcggccgt cgtctccgtc ctctcgctgc tggcgatagt ctatgtgttg gccgggtaca
     2461 ggcgcgtctc agcagagacg gccgccgccg agcggcaggt gcagacgctg cgggccgagc
     2521 gcgacgacct caagcggcag gccgccgaga taaggcagag catcccggag gagcaggcac
     2581 gcacgctcga ggccgcgcac actctggttg accgcaaaag cttctcctgg tcgcagctct
     2641 tctcagacct cgaaggatcg ctgccctcga ccgtgcgcgt ctcgcgcata agcgtccgcg
     2701 acgtttcgca gtacggcgag cagacccgcg ccgacctgga cttgacggtc gtcggccgcg
     2761 cgccgacgga cgtgaccggc atgatcgccg agatgagccg gcagggcgtc ttctccgcca
     2821 tccccgtctc cgagagccag aagacaggcc ggggtgagag cggcttcgag tggctgctga
     2881 gggtcaacta cgtgcagcgc tcgcgcgtgc gcgcgggcga gggcggcggc gaagtcggcg
     2941 aggcggcggc gcccggcgcg gagagggggc gcgaataggt ttgagggacg actccgcgat
     3001 cacgagggcc tcgggcggcg cacgacagaa agatttgcgc gcgcgcttcg agcacttccg
     3061 cggctcgcgc cggcgcagcg cgctgggctt ggccgaagtc ggcgcgctcg gcgccgccgc
     3121 cctgctcctg ctcggcgccg tgctctccta cctcttcctg ctcgtgccgc agcgctcgcg
     3181 ccagcagtcg ctggccgcgg agcgcgagag cctccagcgt cagctcatgg gcgagcgcgc
     3241 caacttcacc gagaggcaga gcacgcagga gagcgtgcgg gagattcttt cgagcctcga
     3301 acgcttcgag atgaagaacc tcgggccggc cagcagcggc gtcaagaccg tctatgagga
     3361 gttgaaccgc ctgatactga aaaacaagct gcgcatcagc ggcggcatca actacacgca
     3421 gctacaggag acggcgccgg ggcagccggc acagcagcgc ggcggcgccc gccagcagca
     3481 ggagggcggc gcgcgcgtcg tcgaaagcat cttccccggc atcggcgtca cgctcacggt
     3541 ggagggcgcc tacgcgaacc tgcgccgctt catacgcgac atcgaatccg acccgcgcca
     3601 gttcgtcgtc atcaacacaa tcgagctcga aggcgtcacg gactcgaact ccggcgcgtc
     3661 ggtcgcctcg caggccctgc ccggcgacgg cacgacgccc gcggcgcccg ccacgccggg
     3721 cgtgcgcggc agcacgctcg tcagcctccg cctcgacatg gcggcatact tccgccgcgc
     3781 ggcctccggg ctctgaagcg cgcggccggc cgcgagcgac ttaaagacct atggccctct
     3841 ttgaaggaaa gaccccggcg gagcgcaaca agatgatcgc gggggtcgtg ctcccgctcg
     3901 tcgcgctcgt cttcgtcgtc cgcatgctct caggctcggg gccggctaag cccgcgaacc
     3961 ccccgaaggc gacgccctcg cccagggccg gcgccgccgc gaggcaggcc gagcagcagc
     4021 ccgaagagac gatcttcgac cgcgcgctca cgccgctccc cgacctcgcc tacggcgcct
     4081 acggcggcgg cgacgccggc cggaacatct tcgccttcta cgagcgcccc gtggtcgtca
     4141 agccgccggt cgaggaggcg acgcccacgc cgacgcccga gcctccgccc ccgcttgtcc
     4201 tcgcgtcgct ctcgccgcag agcgtgttcg cgcgcacggc tggcttcacc ctgcaggtct
     4261 cgggcgacaa gttcacgccc gccactcgcg tctatctcga ctctcaggag cttcagaccc
     4321 agtaccgcag cccgcagcag ctcacggcaa cagtcccggc cgcgctcatc gcgcagcagg
     4381 gccagcgcac cgtagtcgtg cgcacgcctg acaacgttct gttctccaac aaccaggccc
     4441 tcaacgtcat gcagccgccc gcgccgacct acaccttcgt cgggctgctc aagcgcgcgc
     4501 gcttcaacac ggccgtgctc aaggatcaga agggcgagct ttacagcgtg cgcgcgggcg
     4561 acctcgtgga gggccgcttc cgcgtcacgg aaatatcgga gcgcagcgtc gagctagttg
     4621 acaaggactt gaacgtccgt cacacgatgc ccttcgtcga gactcgctcg ttgggcgcga
     4681 cgggcgggcg cgttcccggc tcaattcagc cgcccccgcc gcccccaagc gacgacgacg
     4741 gcgacgacga gccgtgacgg agaacgaccg catgaaggcc gacgccgaat cccacaaaga
     4801 ccggagggcc catccgcggg gccagcgcgg ctacgcgctc gtggcgctgc tcgcgctgat
     4861 gacggtgctg atgataacgg ccatgtcggt cgcgccgagc atgcggcagc agtcgcgccg
     4921 cgagcgcgag ctcgaggcca tacggcgcgg cgaggaggtc gccgaaggca tacgccgctt
     4981 catacactac aagggggtgc cgccgacctc catggaagag ctgctcgaag gcgcgcccgt
     5041 cggcactaag aaggtcaagg tcatacgcgc cagctccgcg cgcgaccccc tcacggagag
     5101 cggcgagtgg aagctcgtca aggagaacga ccgcgcgctc ataaccttca tacaggagct
     5161 gaccaagtac accgaagggc gcccgccgca acccctgaac cctttcgaga ggaaccctgc
     5221 catggcgggc atcgcgcaga ggctcccgcg cgtgatgaac atactcgaca ccggctcggg
     5281 cctgggcgcg cccggcggcg gcgaggacag ctcgctcgac agcaaggggc ctttcatcgg
     5341 cgtcgtgagc cgcagcgagc gcgagtccat catcgcctac tacggcatcg agcgccacga
     5401 cggctggatc ttcacaccct tcttcaggta gcgcgcgccg cgcgcacgca tctcttaaga
     5461 gagccgcgac ggcatcaacg cgctccctcc gggcgacacg cccggaggga gcgcgaaaat
     5521 ttttgcgcgc gaaatacaat taagttattg acatctgttt ttaatgtgtt tataaatccc
     5581 aacatgttgt gcgccattca cgctaggcca caagaagaaa actgacgcag catcttgtgg
     5641 tcgcaaccaa caaaaaaaga aaaggagcag caacaaccta tggcaactaa gaaggcagga
     5701 aaaggcggta gcaaaaaggg cggctcgaag ggcggctcga agggcggttc caagggcggt
     5761 tccaagggcg gctcgaagaa gggcggctcg aagggcggct cgaagaagag gtagtctagc
     5821 ccagggtagt aagcgcaacc ttcaacggcg cacacgacaa tctccgcccg cgagggcgct
     5881 aacacggacg gcggtcgcac acagcgcgcc gtccgaatta tttttaagca gtcagcgatc
     5941 agccataagc taagaccacc cggtgacaca acgccaagtc atagcgatag cgcccgcggc
     6001 cgagttgaaa gctgactgct gaccgcttat tgctgacagc ctcttcacat gatctcggtc
     6061 gcgctggtcg agccggagat accgccgaac acgggcaacg tcgcgcgcct gtgcgcggcg
     6121 acgcgcacgc cgctgcacat cgtcggcgct acgggcttca ggctcgacga ccgcgcggtg
     6181 cggcgcgcgg ggctcgacta ctggcccgag gttgagctgc accgccagcg cgacctcgac
     6241 gctttagccg cggctctgcc cggcgcgcgc ttcctgtacc tgacgacgaa ggccgagagg
     6301 tcttacgccg actgggggtt cgccgaggac gactgcctcg tcttcgggcg cgagacgcgc
     6361 gggctgcccg aggagctcct gcgcgccaac cgggagcgct gcctgcgcat acccgtcctc
     6421 aacccgcgcg tccgcagcct gaacctcgcg acggccgtcg ccgttgtgct ctacgaggcg
     6481 ctgcggcaga cgggcaggct cggcggcgcc gggtgacaag cggcctcgtt acgggctaga
     6541 atccacacac tttaatcacc gccaaagaag ggcagagggg tcaagcggac ggcggggcgg
     6601 agcctgtttt taaagggctc ccgggcgccc gccgccgcgt ccgagatgga gagagaagac
     6661 gtaaggaaca tcgccataat cgcgcacgtt gaccacggca aaacgacgct ggttgacgcg
     6721 atgctcaggc agtcggggac gttccgcgag aacgagcagg tggtcgagcg cgtgatggac
     6781 tcgatggact tggagcgcga gcgcggcatc accatcatgg cgaagaacac gtccgtccgg
     6841 tacggcggcg tgaagataaa catcgtggac acgccgggcc acgccgactt cggcggcgag
     6901 gtcgagcgcg tcctgaagat ggttgacggc gtgatgctcc tcgttgacgc ggccgagggc
     6961 tgcctgccgc agacgcgctt cgtgctgagg aaggctttgg aggcgaggct cccggccatc
     7021 gccgtcgtca acaagattga ccgccaggac gcccggcccg aggaggtagt caacgaaatc
     7081 tacgacctct tcatagacct cgacgcgacg gacgagcaga tagacttccc catactctac
     7141 gccgtctcgc gtgagggcgt ggcgaagaag aacatcgagg acgagtcgag ctcgctcagg
     7201 ccgctcttcg acgagatagt gcgcaccatc ccgccgccgc gccagctccg cgacgactct
     7261 ttgcagatgc tcgtcgccaa cctcgactac aacgagtacg tcggccgcct cgccat
//
LOCUS       DASPKR010000199         2402 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_801574, whole genome shotgun sequence.
ACCESSION   DASPKR010000199 DASPKR010000000
VERSION     DASPKR010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_801574"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..510)
                     /locus_tag="VD968_05495"
     CDS             complement(<1..510)
                     /locus_tag="VD968_05495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13880.1"
                     /translation="MSAETQGTTPGRDLFVFNCSQLVTLAGPRRPRVGAEMRELSIIE
                     GGAMLVRGGRIAAVGAREDVEPLAGAGCEFIDAGWRVVTPGFVDAHAHPVFAGDRADE
                     FERRALGATYQEIAAAGGGIRSTVRRTRAASEDELLEAARRRAGWFLRTGTTTVEAKS
                     GYGLSAEGEL"
     gene            complement(523..999)
                     /locus_tag="VD968_05500"
     CDS             complement(523..999)
                     /locus_tag="VD968_05500"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYE13881.1"
                     /translation="MTRTMLVVFSLAAVAAVVFAYQGKGGPPRPGKADKDLAAVRAVI
                     EEQQAAWNRGDVEGFMAGYAKEEATTFISGDTLTRGWQTVLERYKRRYDSRQKMGTLS
                     FTELDLKPLSEFYIMATGRWQLALEGGETPHGRFTLIFRRTVGGWRIIHDHTSSAD"
     gene            complement(1023..1733)
                     /locus_tag="VD968_05505"
     CDS             complement(1023..1733)
                     /locus_tag="VD968_05505"
                     /inference="COORDINATES: protein motif:HMM:NF014305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYE13882.1"
                     /translation="MTPSEDDRDTRPTEHALEARVKLYYDLHAPAETPAPLLIALHGY
                     GSNKGWMMREALRHAPEGFAVAALQGPHQHMKEPREPGGPPRYGFGWLTNFRPEESVA
                     LHHRALLDLIETLAGRGVARRDGVFLMGFSQSCALNYRFAFTHADVLRGVVGICGGLP
                     GDWETSTLYKPSRASVLHLHGTRDEFYPPERVSPYAASLRARSADVEVRAYDAAHDLA
                     PAMRGDVRSWLAARSRID"
     gene            complement(1746..>2402)
                     /locus_tag="VD968_05510"
     CDS             complement(1746..>2402)
                     /locus_tag="VD968_05510"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE13883.1"
                     /translation="SPVLRIEQSEGSVGVIYSKAGARLRVTGDRLVCALPFTVLRRLE
                     VAPRFSAAKQAAVEGLPLTSVVRTYVQSRTKVWREAGLSGEALLDEPRAWFTPYGHPG
                     RRDILEAFSTGEAARRLGRLDEAARVNHAVEQAARFFPSLVASFEGGASVDWGADEWA
                     RGAWTWYKPGQLTSLASHAARPEGRVHFAGEHTSAWPGWMQGALDSGLRAAREVNDAP
                     "
BASE COUNT          349 a          865 c          846 g          342 t
ORIGIN      
        1 caactcgccc tcggccgaga gcccgtagcc cgacttggcc tcgacggtcg tcgtccccgt
       61 ccttaggaac cacccggcgc gccggcgcgc cgcttcgagc agctcgtctt ccgaggcggc
      121 gcgcgtcctt cgcaccgtgg aacggatgcc tccgcccgcg gccgcaatct cctggtaggt
      181 agcgccgagg gcgcgccgct cgaactcgtc ggcgcggtcg cccgcgaaca cggggtgcgc
      241 gtgcgcgtcc acgaagcccg gcgtgacgac gcgccacccc gcgtcaataa actcgcagcc
      301 cgcgccggcc agaggctcca cgtcctcgcg cgcgccgacg gcggcgatcc gccccccgcg
      361 cacgagcatc gccccaccct cgatgatcga aagctcgcgc atctcggcgc ccacgcgcgg
      421 gcggcgcggc cccgcgagcg tgacgagctg cgagcagttg aagacgaaaa ggtcgcggcc
      481 cggcgtcgtc ccttgcgttt cggcgctcat cggtcgcgtc tttcagtcgg cggaggaggt
      541 atggtcgtgg atgatacgcc agccgccgac ggtgcggcgg aagatgagcg tgaagcggcc
      601 gtgcggcgtc tcgccgcctt cgagcgcgag ctgccagcgg cccgtagcca ttatgtagaa
      661 ctcgctgagc ggcttgagat caagctccgt gaaggagagc gtccccatct tctggcgcga
      721 gtcgtagcgg cgcttgtagc gttcgagcac ggtctgccag ccgcgcgtga gggtgtcgcc
      781 ggagatgaag gtggtcgcct cctccttcgc gtagccggcc atgaagccct ccacgtcgcc
      841 gcggttccag gcggcctgct gctcctctat gacggcgcga acggcggcca agtccttgtc
      901 ggccttgccg gggcggggcg gcccgccttt gccctggtag gcgaagacga cggccgcgac
      961 cgccgcgagc gagaagacta cgagcatcgt tcttgtcatc gaagcttcac ctccctcgcg
     1021 ccctagtcta tacgagaacg ggccgcgagc cacgagcgca cgtcgccgcg catggcgggg
     1081 gcgagatcgt gcgcggcgtc gtaggcgcgc acttcaacgt ccgcggagcg agcgcggagg
     1141 ctcgccgcgt aaggggagac gcgctcgggc gggtagaact cgtcgcgagt gccgtgcagg
     1201 tgcaggactg aggcgcgcga aggcttgtag agcgtgctcg tctcccagtc gccgggcagc
     1261 ccgccgcaga tgccgacgac gccgcgcaac acgtcggcgt gcgtgaaggc gaagcggtaa
     1321 ttgagcgcgc acgactgcga gaagcccatg aggaacacgc cgtcgcgccg cgcgaccccg
     1381 cggccggcga gagtctctat caggtcgagc agcgcgcggt ggtggagcgc caccgactcc
     1441 tcgggccgga agttcgtgag ccagccgaag ccgtagcggg gaggcccgcc gggctcgcgc
     1501 ggctccttca tgtgctggtg cggcccctgc aaggcggcga cggcgaaccc ctcgggcgcg
     1561 tgacgaagcg cctccctcat catccaacct ttgttgctcc cgtagccgtg cagcgctatc
     1621 aggagcggcg cgggcgtctc ggccggcgcg tgcaggtcgt agtagagctt cacgcgcgct
     1681 tcgagcgcgt gctcggtcgg ccgcgtatct ctgtcgtctt cgctcggcgt catccgtatc
     1741 ttcgctcacg gggcgtcgtt gacttccctc gccgcgcgca ggccggagtc gagcgcgccc
     1801 tgcatccagc cgggccacgc ggaggtgtgc tcgcccgcga agtgcacgcg cccctcgggc
     1861 cgcgccgcgt gcgaggcgag cgaagtcaac tgccccggct tataccacgt ccacgcgccg
     1921 cgcgcccact cgtccgcgcc ccagtccacc gacgccccgc cctcgaagct cgccacgagc
     1981 gaagggaaga agcgcgcggc ctgctcgacg gcgtgattga ctcgcgccgc ctcgtccagg
     2041 cggcccaggc ggcgggccgc ctcgccggtc gagaacgctt cgagtatgtc gcggcggccg
     2101 gggtggccgt agggggtgaa ccacgcgcgc ggctcgtcta agagcgcctc gccggagagg
     2161 cccgcttcac gccagacctt cgtgcgcgac tgaacgtagg tgcgcacgac cgacgtgagc
     2221 ggaagccctt cgacggccgc ctgcttggcg gcggagaagc gcggcgcgac ttccagacgc
     2281 cgcagcaccg tgaacggcag cgcgcatacg agccggtcgc ccgtcacgcg cagccgcgcg
     2341 cccgccttcg agtagatgac gcccacagag ccttccgact gctcgatgcg caagaccggc
     2401 ga
//
LOCUS       DASPKR010000200         6563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1449928, whole genome shotgun sequence.
ACCESSION   DASPKR010000200 DASPKR010000000
VERSION     DASPKR010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6563)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6563
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1449928"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..969
                     /locus_tag="VD968_05515"
     CDS             <1..969
                     /locus_tag="VD968_05515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13884.1"
                     /translation="VVLSGRYTKGGRGVLRLRGKMSGRDFVREIPVELPEAEARHDVL
                     ATLWARARVSDLMSRDYEGLQRNKAHADLRETITQLGLEFRLMTQFTSFVAVEEMTIT
                     EGGQPRRVEVPVELPEGVSRAALGGPGARAIVFSGGISSNVGYLSSMNMTVATETVTV
                     TSDGGAGARQSAGTTILDRSIIDPGSVLEGKGVRLKRPGKGKGGGGAGGGSAQPAPTP
                     DPEQERMQKLRALLHPSLFAVVERLGKKEGKPGDAEAGFVRDGKSEVQVWLAEKTPEV
                     VAQLKALGFEVVLDPQSAKLIIGRLPIDKLSALADIKAVRYVAPQT"
     gene            complement(991..1875)
                     /gene="lpxC"
                     /locus_tag="VD968_05520"
     CDS             complement(991..1875)
                     /gene="lpxC"
                     /locus_tag="VD968_05520"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: protein motif:HMM:TIGR00325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HYE13885.1"
                     /translation="MIKQTTIAKPVETSGTGLHTAAAVRICLRPAPPDTGHVFVRTDL
                     DGFEIPASVECIAHCSYATTLMRTGVMLSTVEHLLSALRGMGVDNAYIEVDNLELPIM
                     DGSGDEFTGMILRAGVAEQRAARRALRVRERVRVEQGERSVSVEPYDGWEIDCLIDFR
                     HPLIGRQHMRFDALDADAYVREISPARTFGFTEEIEALRRANLIRGGSLGNAIVLSPD
                     GMLNDTPLRSRDEFVRHKILDIIGDLSLLGMPLLGRVRAERSGHLLHAQLMSKLLRDE
                     SAWEIVDMPVGAGLAAAR"
     gene            2332..>6563
                     /locus_tag="VD968_05525"
     CDS             2332..>6563
                     /locus_tag="VD968_05525"
                     /inference="COORDINATES: protein motif:HMM:NF037016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HYE13886.1"
                     /translation="MRVRYDSTLNARSRTLSAALSSLLTTALILIPALPPRPAQAAAG
                     ARSLKPADAGAERSAAASPAALAAPLVPSLSATKTDSFPDPDGDGKAEEGDIITYTVT
                     ITNNGTDATNVQFSDNVDPNTTLFPGSVSTQPIARGDSYNVLGNVRIQPDASSGLLAN
                     DCDPDNGPGCSSAGLTASGPTSSTAGGNVTVNSNGSFSYNPPAGFVGADSFQYTVTDG
                     TGKTDMATASFTVSNMVWFVDNAATAGGDGRLTSPFNSLASVSGASDPDGPGEIIYVL
                     EGSGPYGGGIALEAGQRLVGQGIGLDAALASFGISAPAHSDARPAATGKPVLANAAGD
                     VIVLAGGNLVTFLDASATAAGSSAVSAAGAGSNTLSNVGLSAAGSANGVSAVNVSGSL
                     SVASSTVSATSSGAAVSVSGGSGTIGFSSTAVSQNGGRVVDVQNRTGGSVSFDTSSTV
                     TGTNGATDAVSLLGNSGGSTVTFSGPVHINTTSAGARGLVADSGGSFTLNMTSGANTV
                     SSTGGAAVDIESLAVNIAFATTFSTNSTGRGLRADGVSGTASFGNTAINSSANTGVLL
                     TGNSAAITFADLDIAPAAGVRALHALDNTGAVSSTSGVIIATGATAVEIDGPASRTPL
                     NVVLTSVSADGTATGILVRDTSDGGNGFRVVGTLTTDGSGGAVTNITNRGADFFNAED
                     VRLGNMTFTNVGTTNGADPTNPASACGDISPTGGGNAGCAAGVHADTVTNLRLANIDM
                     SGGNQQGVNLLNVTDFLLADSNITNMGDQVREDGLRARNLLGTAEISNTIFSGNKEAQ
                     AHIEMVSGTLAGLSVTGSTFSNSTGPVGNHGLRFQAWDGSSSKLSVANSTFSSLFSNG
                     IQALATDTASMEVSVTGSTFTNWGSSAIVLIQDKSANVRFNIANNPSFTRSAASTGTS
                     HVIVVNRLTTSLLGSSIQGAITGNTIGDSTSNTSASVGGSGIDINGLGSGTTTVLVQN
                     NNIRGVANRGMTLNMAESNTGSNRLNATVTGNTVSVTNPTGFEGIFVQAGSLTGNSGI
                     LCAEIANNQSSSAATNGLRTRQRFLTTFQLRGYTGANNSNTSVITYLQAQNPSLGDTV
                     TADNSVSTGGGGYVNTPGGAQCAQPVLPSAPLPSLSASLDADALGAPQHEQTAAVKTY
                     SAGGEFTPLRKVRRGLAHSERGQVLGAGLADETAKAAPAAAAVAPAVSGGNVNVNIGT
                     LPAGDSVTITFQVQVSEPFTGSQPQVSNQGTVTADGGISIDTDDPSVGANTPGEEDPT
                     VTPILLRPTVNINDATVTEPASGSASASFTVTLSHAYTQPVSVSFATAAGGANPATAG
                     TDYTAASGTVNFAVGETFQTVNVPALADLDAGETDETFLVNLSAATNGTIGDGQATGT
                     ITDTSVASPVIISELRTSGPDGSGDDFVELLNT"
BASE COUNT         1130 a         2412 c         2117 g          904 t
ORIGIN      
        1 gtcgtcctct ccgggcgcta cacgaagggc ggccgcggcg tcttgcgcct gagggggaag
       61 atgtctggcc gcgacttcgt gcgcgagatt ccggtcgagc tgcccgaggc ggaggcgcgc
      121 cacgacgtgc tggcgactct ctgggcgcgg gcgcgcgtct cggacttgat gagccgggac
      181 tacgaggggc tccagcgcaa caaggcgcac gccgacttgc gcgagaccat cacgcaactc
      241 ggcctggagt tcaggctgat gacgcagttc acctccttcg tcgcggtcga ggagatgacc
      301 atcactgagg gcgggcagcc gcgcagagtc gaagtccccg tagagcttcc cgagggcgta
      361 agccgcgcgg cgctaggcgg ccccggcgcg cgcgcaatcg tgttctcggg cggcataagc
      421 tcgaacgtcg gctacctaag ctcgatgaac atgaccgtcg cgaccgagac ggtgacggtc
      481 acttccgacg gcggcgcggg cgcgaggcag tcggccggca cgaccatact cgaccgcagc
      541 atcattgacc ccggcagcgt cctcgaaggc aagggcgtgc ggctgaagag gccggggaag
      601 ggaaagggcg gaggcggcgc gggcggcggc tcggcgcagc cggccccgac gcccgacccc
      661 gagcaggagc gtatgcagaa gctgcgggcg ctgctgcacc cttcgctgtt cgccgtggtc
      721 gagaggctcg ggaagaagga agggaagccg ggcgacgccg aggccgggtt cgtgcgcgac
      781 ggcaagtccg aggttcaggt gtggctcgcg gagaagacgc ccgaagtagt cgcgcagctc
      841 aaggcgctcg gcttcgaggt cgtgctcgac ccgcagtcgg ccaagctcat catcggccgc
      901 ctgcccatag acaagctctc ggcgcttgcc gacataaaag ccgtccgcta cgtggcgccg
      961 cagacctgac aggacggccc gccggcgcct tcacctcgcc gcggcgaggc cggcgccgac
     1021 gggcatgtca actatctccc atgccgactc gtcgcgcagc agcttcgaca tcagttgcgc
     1081 gtggaggagg tggccgctgc gctcggcgcg cacgcggccg agcaggggca tgccgagcag
     1141 cgacaggtcg ccgatgatgt cgagaatctt gtggcgcacg aactcgtcgc gcgagcgcag
     1201 cggagtgtcg ttaagcatcc cgtcgggcga gagcacgatg gcgttcccga gcgagccgcc
     1261 gcgtatgagg ttcgctcgcc tgagcgcctc tatctcctcg gtgaagccga aggttcgcgc
     1321 gggcgaaatc tcacgcacgt aagcgtcggc gtcgagcgcg tcgaagcgca tgtgctggcg
     1381 gcctatgagc gggtgcctga agtctatcag gcagtcaatc tcccacccgt catagggctc
     1441 gacggagacg ctccgctcgc cctgctccac ccgcacgcgc tcgcgcacgc gcagggcgcg
     1501 ccgcgccgct cgctgctccg cgacgcccgc gcgcaggatc atccccgtga actcgtcgcc
     1561 cgagccgtcc attatcggca gctcgaggtt gtcaacctct atgtaggcgt tgtccacgcc
     1621 catgccgcgc agcgccgaca gcaggtgctc gaccgtcgag agcatcacgc ccgtcctcat
     1681 cagcgtcgtc gcgtaagaac agtgtgcgat gcactcgacc gaggcgggaa tctcgaagcc
     1741 gtcgaggtct gtgcggacga agacgtggcc cgtgtcgggc ggtgcgggcc gcaggcagat
     1801 gcgcacggcg gcggccgtgt gcagccccgt cccgctcgtc tccaccggct ttgcgatggt
     1861 cgtctgttta atcaaagtta ggccgaagcg ccttccggtc tcgcgcgggg ccgcgcgttt
     1921 tctttgagag agcgacgaaa ctgagtgcaa ggcccgtgcc gccggcgcgc acgcgcgatt
     1981 ccgagggggc cgcccgcgcc gcggtccgcc cgtgtggctt aaacgccgca cgcgccgcac
     2041 gcgcctgtcg cccatacgcc acacgcgcgg cgccagtccc gcgtaaaaca tcgcgacggg
     2101 atgtaaagcg gcttgcgcgg ccccgccggg cggaagaaaa aggttgacgc gcgggcggcg
     2161 ttagcttatc gttgcgctcc cattactgat tgcgccggtc agcacgagcc tttccaacct
     2221 gattcggtct catgcggggg ttcgacccgc tgccagcact ctctcgagcc cgcaacaccg
     2281 cttgtagaag ccacccaaca aggtgccacc caacccctaa ggagctatct catgcgcgta
     2341 agatacgact cgactttaaa cgctaggagt cgcacgctat cggctgccct ctcttcgctg
     2401 ctcacgacgg cactgatact tatacccgca ctgccaccgc ggcccgcaca ggccgccgcc
     2461 ggcgcgcgca gcctcaagcc ggccgatgcc ggcgcagagc gcagcgccgc cgccagcccg
     2521 gccgcgctcg cggcgccact cgtcccttcg ctctcggcca ccaagaccga ctcctttccc
     2581 gacccggacg gcgacggcaa ggccgaggag ggcgacatca tcacctatac cgtcacaata
     2641 acgaacaacg gcacggacgc gacgaacgtg cagttcagcg acaacgttga cccgaacacg
     2701 acgctcttcc ccggctccgt ctcgacgcag cccatcgcgc gcggcgacag ctacaacgtg
     2761 ctcggcaacg tccgcataca gcccgacgcc tcctcgggcc tgctcgccaa cgactgcgac
     2821 ccggacaacg gccccggttg cagcagcgcc gggctcacgg cctctgggcc gacctcctcg
     2881 acggcgggcg gcaacgtcac ggtcaactcc aacgggagct tcagctacaa cccgcccgcg
     2941 ggcttcgtgg gcgcggacag cttccagtac acggtcacgg acggcacggg caagaccgac
     3001 atggccaccg cgagcttcac ggtgagcaac atggtctggt tcgttgacaa cgcggcgacg
     3061 gccggcggcg acggccgcct gacctcgccg ttcaactcgc tcgcctccgt cagcggcgcg
     3121 agcgacccgg acggccccgg cgagatcatc tacgtcctcg aaggctcagg cccctacggc
     3181 ggcggcatcg cgctcgaggc ggggcagcgg ctcgtcgggc agggcatcgg cctcgacgcg
     3241 gcgctcgcct ccttcggcat aagcgccccg gcgcacagcg acgcgcgccc ggccgcgacc
     3301 ggcaagcccg tgctcgccaa cgccgcgggc gacgtgatag tgctcgcggg cggcaacctc
     3361 gtcaccttcc tcgacgcttc ggccacggcg gccggctcgt cggccgtctc cgccgcgggc
     3421 gccggctcta acacgctctc taacgtcggc ctcagcgccg cgggctccgc caacggcgtg
     3481 agcgccgtga acgtctccgg ctcgctgtcg gtcgcaagca gcaccgtctc ggccacgagc
     3541 tccggcgcgg ccgtgagcgt ctcgggcggc tcgggcacga ttggcttctc ctcgacggcg
     3601 gtcagccaga acggcgggcg cgtcgttgac gtgcagaaca ggacgggcgg ctccgtcagc
     3661 ttcgacactt cctcgacagt gacggggacg aacggcgcga cggacgccgt ctcgctgctc
     3721 ggcaactcgg gcggctccac cgtcaccttc tccggccccg tgcatatcaa caccacgtct
     3781 gccggcgcgc gcggcctcgt ggccgacagc ggcggctcat tcactcttaa catgacgagc
     3841 ggcgccaaca ccgtcagctc cacgggcggc gcggccgttg acatcgagag cctcgccgtc
     3901 aacatcgcct tcgcgaccac cttctcgacc aacagcacgg ggcgcggcct tcgcgccgac
     3961 ggcgtctccg gcacggcctc gttcggcaac acggccatca acagctccgc gaacacgggc
     4021 gtgctgctga ccggcaactc ggcggcgata acgttcgcag acctcgacat cgcgcccgcg
     4081 gccggcgtgc gcgccctgca cgccctggac aacacgggcg ccgtctcctc tactagcggc
     4141 gtcatcatcg cgaccggcgc gacggccgta gagattgacg gccccgcctc ccgcacgccc
     4201 ctcaacgtcg tgctcacgag cgtctcggcc gacggcacgg ccaccggcat actcgtccgc
     4261 gacacctccg acggcggcaa cggcttccgc gtcgtaggca cgctgacgac cgacggctcg
     4321 ggcggcgccg tcacgaacat cacgaaccgc ggcgccgact tcttcaacgc cgaggacgtg
     4381 cgcctcggca acatgacgtt cacgaacgtc ggcaccacga acggcgccga cccgacgaac
     4441 ccggcctccg cgtgcggcga catctcgccc acgggcggcg gcaacgcggg ttgcgccgcg
     4501 ggcgtccacg ccgacacggt cacgaacctg cgcctcgcaa acatagacat gagcggcggc
     4561 aaccagcagg gcgtcaacct tctgaacgtg acagacttcc tcctggccga cagtaacatc
     4621 acaaacatgg gcgaccaggt cagagaagac ggcctgcgcg cgcgcaacct cctcggcacg
     4681 gccgagataa gcaacacgat ctttagcggc aacaaggagg cgcaggcaca catcgagatg
     4741 gtctccggca cgctcgccgg cctgtccgtc acgggcagca ccttctcgaa cagcacgggg
     4801 ccggtaggca accacggcct gcgcttccag gcgtgggacg gctcctcctc gaagctctcc
     4861 gtcgcgaaca gcaccttctc gagcctcttc tcgaacggca tacaggcgct ggccaccgac
     4921 acggcctcga tggaggtgag cgtcaccggc agcaccttca ccaactgggg ctcgagcgcc
     4981 atcgtcctca tccaggacaa gtcggcgaac gtcaggttca acatcgcgaa caacccgtcg
     5041 ttcacgcgct cggccgcgag caccggcacc tcccacgtca tcgtcgtcaa ccggctcacg
     5101 acctcgctcc tgggctctag catccagggc gccatcaccg gcaacaccat cggcgacagc
     5161 acctcgaaca cgtcggcctc ggtgggcggc agcggcatag acatcaacgg gctcggctcg
     5221 ggcacgacga ccgtgctcgt gcagaacaac aacatccgtg gcgtcgccaa ccgcggcatg
     5281 acgctgaaca tggccgagag caacacgggc agcaaccgcc tgaacgccac ggttacgggc
     5341 aacacggtga gcgtgacgaa ccccacgggg ttcgagggca tcttcgtgca ggccggcagc
     5401 cttacgggca acagcggcat actctgcgcc gagatagcca acaaccagtc gtccagcgcg
     5461 gccaccaacg gcctgcgcac gcgccagaga tttttgacca cgttccaact ccgcggctac
     5521 accggcgcga acaacagcaa cacgtctgtg attacttacc tccaggcgca gaacccgtcg
     5581 ctcggcgaca cagtcacggc cgacaactcg gtctcgaccg gcggcggcgg ctacgtcaac
     5641 acgccgggcg gcgcgcagtg cgctcagccc gtgctgccgt ccgcgcctct gccgtcgctc
     5701 tcggcctcgc tcgacgccga cgcgctcggg gcgccgcagc acgagcagac cgcggccgtt
     5761 aagacttact ccgcgggcgg cgagttcaca ccgctacgca aggtgcggcg cggcctcgcg
     5821 cactccgagc gcggccaggt gctcggcgcc ggcctcgccg acgagacggc gaaggcggcc
     5881 cccgcggctg ctgccgtcgc cccggcggtc tccggcggca acgtcaacgt gaacatcggc
     5941 acgctgcctg cgggcgactc cgtgaccatc accttccagg tgcaggtctc cgagccgttc
     6001 accggctcgc agccgcaggt ctccaaccaa ggcacggtga cggccgacgg cggcatcagc
     6061 atagacaccg acgatccgtc ggtcggcgcg aacacgccgg gcgaggaaga cccgacggtg
     6121 acgccgatac tgctgcgccc gaccgtcaac ataaacgacg ccacggtgac tgagcccgcc
     6181 tcgggctcgg ccagtgcctc cttcaccgtg acgctctcgc acgcctacac gcaacccgtc
     6241 tccgtcagct tcgcgaccgc ggcgggcggc gccaacccgg cgacggccgg caccgactac
     6301 acggcggcga gcggcaccgt caacttcgcc gtcggcgaga ccttccagac cgtcaacgtg
     6361 ccggctctgg cagacctcga cgcgggcgag acggacgaga ccttcctcgt caacctctcg
     6421 gccgcgacga acggcacgat aggcgacggg caggcgacgg gcacgataac cgacacgtcg
     6481 gtcgcgagcc ccgtcatcat ctcggagctt cgcacgagcg gccccgacgg ctcgggcgac
     6541 gacttcgtcg agctgctcaa cac
//
LOCUS       DASPKR010000201         3162 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1705896, whole genome shotgun sequence.
ACCESSION   DASPKR010000201 DASPKR010000000
VERSION     DASPKR010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3162)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3162
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1705896"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..331
                     /locus_tag="VD968_05530"
     CDS             <1..331
                     /locus_tag="VD968_05530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13887.1"
                     /translation="QGMEVKGVNGNVEVRLGAGLDADIHVRGQNGNVSFEVPNASKQE
                     REGSSEVRARVGDGGAPITVRGGNGNLTFKSDVAVGRITFAPGAADGDRDMPPPPPLP
                     PPPAPIN"
     gene            complement(469..735)
                     /locus_tag="VD968_05535"
     CDS             complement(469..735)
                     /locus_tag="VD968_05535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13888.1"
                     /translation="MAETPNHTNNSQTLVVDAATFEFETLEQQNGNATVVRFRVENPD
                     VRAGDVLLVLSGSEIHFHGMIGMIEEGRGVATDRRGSLLPATVQ"
     gene            complement(768..1325)
                     /locus_tag="VD968_05540"
     CDS             complement(768..1325)
                     /locus_tag="VD968_05540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13889.1"
                     /translation="MPRTGESTGRGGGGQGPPALRRDSRGRVEPASLADLIQWFLDYD
                     RRVAVVRFPAVEHLFRLKQAAALAERPDAVEFASAEDRLAVGVMQALVEHDSERELHA
                     WVRELLGALDDATKTNEAIAESYGLRPGEGASVVEEAEKIPSAREREVYLTCCWLETL
                     CTAEIRVLGWAYRELYGRPFHPDNF"
     gene            complement(1337..2344)
                     /locus_tag="VD968_05545"
     CDS             complement(1337..2344)
                     /locus_tag="VD968_05545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13890.1"
                     /translation="MTGKTLTPLEDFLAGQDDAAWRAALEELLPSVHEVDREAVQIWF
                     HFFPLALFRAFEEAEDADKLARELLMQGRWALREQVDSSHRFLYGHRFWPEVKREVVR
                     AAESGARPSSLAALAREVAGRVAPELKVSESLVIAVAAVALMTLRQAGLDAFRASPGE
                     VLIDRRRAARSPEEVLRERARDDSQGLFGFLRTADKRWTVVWDENDDDRRFRVVNGQE
                     VASGAATDKRPWHEVDTRCTVDEGPIPVQCRSASCGTCWVGVLGGAEKLSEVAERERK
                     VMPLFGYIETDEARPLIRLSCQAQATGAVSIVIPPWNGYFGKYLKRMAEGETAGEAVA
                     G"
     gene            2482..>3162
                     /locus_tag="VD968_05550"
     CDS             2482..>3162
                     /locus_tag="VD968_05550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13891.1"
                     /translation="MLKLPAMAGDDDSRLLSDLTLGEAKRGLVYAAAIILALALFVAL
                     VGRVAVALLLGVVAGAYLLPVQEFFERRLRRRAGSALVTMALIIVPLVALFAYGWSEV
                     SGYSSVVVERRDEIADSISRSLARYLPVRYEDTRLQLQSAFTEAVVRSGKYFGELREK
                     AALIFTAATLFFFTVYYILTQRARITQYLKLRVPGDFLPFYERLAENVGGALRGAVWA
                     VFIDQTIKA"
BASE COUNT          486 a         1102 c         1053 g          521 t
ORIGIN      
        1 gcaggggatg gaggtgaagg gagtgaacgg caacgtggag gttcggctgg gcgccgggct
       61 cgacgccgac atccacgtgc gcggtcagaa cggcaacgtc agctttgagg tgccgaacgc
      121 gtcgaagcag gagcgcgagg ggagttccga agttcgcgcg cgcgtgggag acggcggcgc
      181 gcctatcacg gtcaggggcg gcaacggcaa cctgactttc aagtctgacg tcgccgtcgg
      241 ccgcatcacg ttcgcgcccg gcgccgccga cggcgaccgg gacatgccgc cgcctcctcc
      301 ccttcccccg ccgcccgcgc cgattaactg aagaaacgcc cagagagacg gtctggcccg
      361 aagtcgtcaa aaagttaagg cccgccggag attcgcttga acctccggcg ggcttcacga
      421 ttttcgggcg acagcgtcgg gcgcggcttt cgtcagccgc cgcgtggctt actggactgt
      481 cgcgggcagc agcgagccgc ggcggtctgt ggcgacgccg cggccctcct ctatcatgcc
      541 tatcatgccg tggaagtgta tctcgctgcc cgagagcacg agcagcacgt cgccggcgcg
      601 cacgtccggg ttctcgacgc ggaagcgcac gaccgtggcg ttcccgttct gctgttcgag
      661 cgtctcgaac tcgaaggtgg cggcgtcaac gacgagcgtc tgcgagttgt tggtgtggtt
      721 cggtgtctct gccatctgtt cttacctctg aaatccgtgc gtcgccttta aaaattatcg
      781 ggatgaaagg gcctgccgta aagctccctg tacgcccagc cgagcacgcg aatctccgcc
      841 gtgcagagag tctcgagcca gcagcaggtc agataaactt cgcgctcgcg cgcggacgga
      901 atcttctcgg cctcctcgac tacggaagcc ccctcgcccg gccgcaagcc gtatgactcg
      961 gctatcgcct cgttagtctt agtcgcgtcg tcaagggcgc ccagcagctc ccgcacccag
     1021 gcgtgcagct ctcgctccga gtcgtgctcg acgagcgcct gcatgacgcc gacggcgagc
     1081 cggtcttcgg cgctcgcgaa ctcgacggcg tcgggccgct cggcgagcgc ggccgcctgc
     1141 ttcaggcgga agagatgctc gaccgcgggg aagcgcacga cggcgacccg ccggtcgtag
     1201 tcgaggaacc actgtatcaa atcggcgagc gacgcgggct ccacgcggcc ccgactgtcg
     1261 cgcctgagcg cgggcggccc ctgcccgccg cccccgcgcc ccgtgctctc ccccgttctc
     1321 ggcataagct ccctgctcaa ccggccaccg cctccccggc cgtctcgcct tcggccatcc
     1381 tcttaagata cttgccgaag tagccgttcc agggcgggat gacgattgag acggcgccgg
     1441 tcgcctgcgc ctggcacgaa aggcgtatga gcgggcgggc ctcgtccgtt tcgatgtagc
     1501 cgaagagcgg catcaccttt cgctcgcgct cggcgacctc gctcagcttc tcggccccgc
     1561 cgagcacgcc gacccagcaa gtcccgcacg aggccgagcg gcactggact gggataggcc
     1621 cttcgtcaac cgtgcagcgc gtgtccacct cgtgccaggg ccgcttgtcc gtggcggcgc
     1681 ccgaggccac ctcctgcccg ttgacgaccc ggaagcggcg gtcgtcgtcg ttctcgtccc
     1741 agacgacagt ccagcgcttg tcggccgtgc gcaggaagcc gaagaggccc tggctgtcgt
     1801 ctcgcgcgcg ctcgcgcagg acttcttcgg gcgagcgcgc ggcgcggcgg cggtcaatca
     1861 gaacctcgcc gggcgaggcg cggaaggcat cgagccccgc ctgcctgagc gtcatcaggg
     1921 cgacggccgc gacggcgatg accagagact cgctgacttt aagctcgggc gcgacgcggc
     1981 ccgcgacctc gcgcgcgagc gcggcgagcg acgacggccg cgcgcccgac tcggccgcgc
     2041 gcacgacctc gcgcttgact tcgggccaga agcggtggcc gtagaggaac ctgtgcgacg
     2101 agtcaacctg ttcgcgcagc gcccagcggc cctgcatgag aagctcgcgc gcgagcttgt
     2161 cggcgtcctc cgcctcttcg aaggcgcgga agagcgcgag ggggaagaag tggaaccaga
     2221 tctgcacggc ctcgcggtca acctcgtgca cggaggggag cagctcttcg agcgccgcgc
     2281 gccacgcggc gtcgtcctgt ccggcgagaa aatcttcgag cggggtcaaa gtcttacctg
     2341 tcatggctcc tcagtctgaa tgcgttggta aatatgatcg tgactgaaac ggagagttta
     2401 accgccttcg ccctccggca caaaccgggc gcggccgact cggatttgtc ccgcggaaaa
     2461 caaagcttcg ccacaggctg cgtgctaaag ttgccggcga tggccggcga cgacgattcg
     2521 agacttctga gcgacctgac gctgggcgag gccaagcgag ggctcgtcta tgcggcggcg
     2581 ataattctcg ccctcgcgct cttcgtcgcg ctcgtggggc gcgtggcggt ggcgctcctg
     2641 ctgggcgtgg tggcgggcgc gtacctcctg cccgtgcagg agttcttcga gcggcgtttg
     2701 cggaggcgtg ccgggagcgc gctcgtcacg atggccctca tcatcgtccc gctcgtcgcc
     2761 ctcttcgcct acggctggag cgaggtgtcg ggctactcca gcgtcgtcgt cgagcgccgc
     2821 gacgagatag ccgactccat cagccgctcg ctcgcacgct acctgcccgt ccgctacgag
     2881 gacacgcgcc tccagctcca gtcggccttc accgaggcgg tcgtccgctc cggcaagtac
     2941 ttcggcgagc tgcgcgagaa ggcggcgctc atcttcacgg ccgccacgct cttcttcttc
     3001 accgtctact acatcctcac gcagcgcgcg cgcatcacgc agtacctcaa gctgcgcgtc
     3061 cccggcgact tcctgccctt ctacgagcgg ctcgcggaga acgtcggcgg ggcgctgcgc
     3121 ggcgcggtct gggccgtctt catcgaccag acgatcaagg cc
//
LOCUS       DASPKR010000202         2172 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1705988, whole genome shotgun sequence.
ACCESSION   DASPKR010000202 DASPKR010000000
VERSION     DASPKR010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2172)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1705988"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VD968_05555"
     CDS             complement(<1..251)
                     /locus_tag="VD968_05555"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HYE13892.1"
                     /translation="MAETNAGNPHEPDFFQGFTPEEMREVERVTTTRRFAKGQVIYSP
                     GETGEALFLLREGSVQIYRMSPEGRKLVIAHLLPFSFFG"
     gene            416..754
                     /gene="trxA"
                     /locus_tag="VD968_05560"
     CDS             416..754
                     /gene="trxA"
                     /locus_tag="VD968_05560"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HYE13893.1"
                     /translation="MSKHISAVTDASFEAEVLKSDRPVVVDFWATWCPPCRALNPVVE
                     ELAEKYAGAVRFVKLDIDENSAVPQRYGIKGIPTLIVFERGREAERVVGLSGKDALSR
                     VIDKYAAAAV"
     gene            899..1768
                     /locus_tag="VD968_05565"
     CDS             899..1768
                     /locus_tag="VD968_05565"
                     /inference="COORDINATES: protein motif:HMM:NF017970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1003 domain-containing protein"
                     /protein_id="HYE13894.1"
                     /translation="MPAEAPTTMTAEALRSVPLFRSLDDDAAAALIALLEVSDEPAGR
                     SLFRAGDAGDALYLIESGRVRIHLRDADGDDVTLAELGRGDFFGEMAILDGKPRSANA
                     TVIEDARLARLTHADFHDFVRASPDVALAMLGAITERLRQTDELLRQRVTRNLNEVEE
                     ERLTFADRVADSMAEFGGSWKFIFFTLALLFVWIPLNSWYLPPERRLDPSPYDLLALF
                     LGVVAGLQVPVILMSQNRQEEKDRLRADLDYQVNLKNELALAEVLRRLDVLESERLPQ
                     LSDEVKKSIDGRR"
     gene            1858..>2172
                     /locus_tag="VD968_05570"
     CDS             1858..>2172
                     /locus_tag="VD968_05570"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HYE13895.1"
                     /translation="MIQAVFFDFNGVIIDDEPIQLKAYQEVLREEGVALTEADYYECL
                     GMDDATFVRAAFERAGREMTDEALRRVIERETAKHREMIKDELPLFPGVVTFVKALSR
                     GHS"
BASE COUNT          376 a          726 c          694 g          376 t
ORIGIN      
        1 tcgccgaaaa aactgaacgg cagcaggtgg gctatgacca gtttccgccc ctccggcgac
       61 atgcggtaaa tctgcacgga gccctcgcgc agcaggaaga gcgcctcgcc cgtctcgccg
      121 gggctgtaga tgacctgccc cttcgcgaaa cggcgcgtag tcgtcacgcg ctcgacctca
      181 cgcatctcct cgggcgtgaa gccctggaag aagtcgggct cgtgcgggtt gccggcgtta
      241 gtctcagcca taagtttcgc tcggcggcct cggccgccgc ccgccatttt aaccccgccg
      301 gggcgcacga ttgtaatcct cattactgac cgccccgccc gccgcccgga taatccatca
      361 agcgcgagcc gccgcagggc gggagcgaca ttttctgcga aaggttttca cgaggatgag
      421 caagcacatt tcggcggtga cggacgcgag cttcgaggcg gaggttctca aatcagatcg
      481 gcccgtggtg gttgacttct gggcgacgtg gtgcccgccg tgccgcgcgc tgaaccctgt
      541 ggtagaggag ctggcggaga agtacgcggg cgcggtccgc ttcgtcaagc tcgacataga
      601 cgagaactct gccgtcccgc agcgctacgg catcaagggc atccccactc tcatcgtctt
      661 cgagcggggc agggaggccg agcgcgtcgt cggcctctcg gggaaggatg cgctctcgcg
      721 cgtcatagac aagtacgcgg ccgccgccgt ctgagccggc cttgatacag agccgcgggc
      781 gctagcgagc aggtatgggg ttgatgccgg catgtctctc atcaatctca tgcccgctcg
      841 ctgctctgtt ttgtgctaaa ttccgcgcgg tctgaattct gccgcgaggt cagcgcccat
      901 gcccgccgaa gcccctacga cgatgacggc cgaagccctc cgctctgtcc cgctcttccg
      961 ctctctcgac gacgatgcag ccgcggcgct aatcgcgctt cttgaagtga gcgacgagcc
     1021 ggccggcagg tcgctcttcc gcgccgggga cgccggggac gcgctctacc taatcgagtc
     1081 gggccgagtc cgcatacacc tgcgcgacgc cgacggcgac gacgtgacgc tggccgagct
     1141 ggggcgcggc gacttcttcg gcgagatggc gatacttgac ggcaagccgc gctcggctaa
     1201 cgcgaccgtc atcgaagacg cgcgcctcgc gcgcctgacg catgccgact tccacgactt
     1261 cgtgcgcgcg agcccggacg tggcgctggc gatgctcggc gcgataacgg agcggctgcg
     1321 gcagacggac gagctcctgc ggcagagggt cacgcgcaac ttgaacgagg tcgaggagga
     1381 gcgcctgacc ttcgccgacc gcgtcgccga ctcgatggcc gagttcggcg ggagctggaa
     1441 gttcatcttc ttcacgctcg cactactgtt cgtctggata cctttgaact cgtggtatct
     1501 gccgcccgag cggcgcctag acccttcgcc ctacgacctg ctcgcgctct tcctcggcgt
     1561 cgtcgccggc ctgcaagtcc ccgtcatcct catgtcgcag aaccggcagg aggagaaaga
     1621 ccgcctgcgc gcagaccttg actaccaggt gaacctcaag aacgagcttg cgctcgccga
     1681 agtcctccga cgcctcgacg tgctcgagtc cgaacgcctc ccgcagctct ccgacgaagt
     1741 gaaaaagtca attgacggca gacggtagag gtggcggccc tccctcacgg taaggctacc
     1801 gcctttgtta caatgccggc gttccgcaca aatcccggac gggtcactca gggcttcatg
     1861 attcaggccg tattcttcga cttcaacggc gtcatcattg acgacgaacc gatacagctt
     1921 aaagcctacc aggaggtgct gcgcgaggag ggcgtggcgc tcacggaggc cgactactac
     1981 gagtgcctcg gcatggacga cgcgactttc gtgcgcgccg ccttcgagcg cgcgggccgc
     2041 gagatgacgg acgaggcgct gcggcgcgta atcgagcgcg agacggccaa gcaccgcgag
     2101 atgataaagg acgagctgcc gctcttcccc ggcgtcgtca cgttcgtcaa ggcgctctcg
     2161 cgcggccact cg
//
LOCUS       DASPKR010000203         2354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_802134, whole genome shotgun sequence.
ACCESSION   DASPKR010000203 DASPKR010000000
VERSION     DASPKR010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_802134"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            95..808
                     /locus_tag="VD968_05575"
     CDS             95..808
                     /locus_tag="VD968_05575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13896.1"
                     /translation="MEGFARAFAEGLDSEGAEFPVLVLHLPDWEKRLEFSAYAVSLPA
                     LQSVAGRKPALEAVPFDGGTEAVTAVYGEARLVIVEFPTPQHAFDADAAINSHLARLR
                     AEGRPTPNVYKRVGNYSVFVFDAAEAEAAEQLAANVKYEKDVRWLGRNPHADEIAARA
                     YTRKMGGVILTTLLTTGAAILLCLAVGGAVGGFIFLRRRSKTARQEVYSDAGGMMRLN
                     LEDLNAPPVTRKLASRAEE"
     gene            complement(1346..>2354)
                     /locus_tag="VD968_05580"
     CDS             complement(1346..>2354)
                     /locus_tag="VD968_05580"
                     /inference="COORDINATES: protein motif:HMM:NF017864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HYE13897.1"
                     /translation="GRVVESRHRGHVIAVDGDGRVLASLGEPETVTFLRSSAKPHQAV
                     PVVASGAADRFSFGEAEIAIACGSHSGEDVHAETVASMLKKIGLDESYLKCGEHDPFD
                     RETAERLRERGERPGVLRNNCSGKHTGMLALALHLGAPPGTYDQTDNPVQQAVLRAVS
                     QFSGVPIGDVELGVDGCGVPVFGMSVRAMALMYARLVSPPVEFDGETRGACRRLVSAM
                     TARPELVGGTRERFDTEVMRAARGRVVSKIGAEGVYTAGVLPCERWPRGLGLAFKIED
                     GEDRRARSTVTVEAFRQLGVLDEDALKALAPYAAFPVRNHRGDFVGEIRPSFELERRF
                     S"
BASE COUNT          417 a          805 c          742 g          390 t
ORIGIN      
        1 gatcgcgccg gcgctggagt tgctggatag agggtgacgc aaagggactg ccttcgctca
       61 agtttacgag tcgggcgagg gcgaggcagt gccggtggaa ggcttcgccc gcgccttcgc
      121 cgaagggctc gactccgagg gcgccgagtt ccccgtgctc gtcctgcacc tgccggactg
      181 ggagaagagg ctcgagttct cggcctacgc cgtgagcctg ccggcgctcc agagcgtcgc
      241 cgggcgtaag cccgcgctcg aggccgtccc gttcgacggc ggcaccgaag ccgtcaccgc
      301 agtgtacggc gaggcccgcc tcgtcatcgt cgagttcccg acgccgcagc acgccttcga
      361 cgccgacgcc gccatcaact cccacctcgc gcggctgcgc gccgaaggaa ggcccacgcc
      421 gaacgtttac aagcgcgtcg gcaactactc cgtcttcgtc ttcgacgcgg ccgaagccga
      481 ggccgccgag cagttggccg cgaatgtgaa gtacgagaag gacgtgcgtt ggctcggccg
      541 caacccgcac gccgacgaga tagccgcccg cgcgtacacg cgaaagatgg gcggcgtgat
      601 tctgacgacg cttttgacga cgggcgccgc gatactgctc tgcctcgcgg tcggcggggc
      661 ggtcggcggc tttatcttcc tgcgccgccg ctcgaagact gcccggcagg aagtctattc
      721 cgacgcgggc ggcatgatgc gcctcaacct cgaagacctg aacgcgccgc cggtcacgcg
      781 caagctggct agccgtgccg aggagtgagg ggggccggag gcactcgccc gaaaatcata
      841 aaagcgcagt gagccgaagc tcgctgcgct tttatgttaa tagagcaccc ggtcaaaaat
      901 tcgcgggtta ctgatcttat ctgcggggtt cccccaagcc cctacagaaa cggaatcagt
      961 aacccgctaa atgatgccct tcgactgcta ctgcctgcga caactccgtt cccccaaaga
     1021 gccgccgcct gctttgctcg tgagagaaaa cctcccccaa agttttcact cactagcagt
     1081 ctccgagcct gacccgataa ctctatttac cccaaacaat tttatctgtc ccgcgtctga
     1141 gcaacggtga tgccatgcgg cccgaaagac ttacacaagg ggcgtgcctg cgccgacttt
     1201 cgccagtaaa gacgcggaaa agcttcatcc tttcgccctc ctcaacggcg ccgtgcggcc
     1261 cttcgcccga gcccgaattg cgtacccgtt tcatactcac gagaggccgt ctgaatgttt
     1321 acgcaacaca ccatgcctct catcatcaac taaaccgcct ctcaagctcg aacgacggtc
     1381 gaatttcccc gacaaaatcg ccgcggtggt tgcggacggg gaacgccgcg tatggcgcga
     1441 gcgcttttag cgcgtcctca tccaatacac cgagctgcct gaacgcctcg acggtgacag
     1501 tggagcgcgc gcggcggtct tcgccgtcct cgattttgaa ggcgagcccc agcccgcgcg
     1561 gccagcgctc gcacggcagc acgcccgccg tatagacgcc ctcggccccg atcttcgaaa
     1621 ccacgcggcc gcgcgcggcg cgcatgacct ccgtgtcgaa gcgctcgcgc gtgccgccga
     1681 ccaactcggg ccgcgccgtc atggccgaga cgagccgacg gcaggctccg cgggtctcgc
     1741 cgtcgaattc aacgggcggc gagacgaggc gcgcgtacat gagagccatc gcgcggacag
     1801 acatgccgaa gacggggacg ccgcagccgt ccacgcccaa ctctacatcc cctatgggga
     1861 cgccggagaa ctgcgagacg gcccgcaaga ctgcctgctg gacggggtta tccgtctggt
     1921 cgtaggttcc cggcggggcg ccgaggtgta gggcgagggc gagcatcccc gtgtgcttgc
     1981 cagaacagtt gttgcgcagg acgccgggcc gctcgccgcg ctcgcgcagt cgctcggcgg
     2041 tctctctgtc gaaggggtcg tgctcgccgc acttaagata actttcgtcc agccctatct
     2101 ttttaagcat tgaggcgacg gtctcggcgt gcacgtcctc gccgctgtgc gagccgcatg
     2161 ctattgcgat ctcggcctcc ccgaagctga atcggtcggc ggcgcccgag gcaacgacgg
     2221 ggacggcctg gtgcggcttg gccgatgagc gcaggaacgt gaccgtctcc ggctcgccga
     2281 gggaggcgag cacgcggccg tcgccgtcaa cggctatgac gtggcccctg tggcgcgact
     2341 cgaccacgcg gccg
//
LOCUS       DASPKR010000204         7699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_672390, whole genome shotgun sequence.
ACCESSION   DASPKR010000204 DASPKR010000000
VERSION     DASPKR010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7699)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7699
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_672390"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..555)
                     /locus_tag="VD968_05585"
     CDS             complement(<1..555)
                     /locus_tag="VD968_05585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13898.1"
                     /translation="MKTRTQLLSFPLALALALVAQAALLAPPASAQDQQYGALERGYR
                     TGYSDGYQSGWADQLRRAPADYRNKADYRSADRAYIAAYGSLEDYSDGYRQGYEVGYE
                     AGYSRRGFDSSLPSGGVTRRGPAPAGDAARANPDDEEGGESSSAPPTRRGGGAAAVPS
                     GTVLVVELLNRLSTDVSQRGDRFEA"
     gene            773..1987
                     /locus_tag="VD968_05590"
     CDS             773..1987
                     /locus_tag="VD968_05590"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase family protein"
                     /protein_id="HYE13899.1"
                     /translation="MTVRRVYLDHSATTPVDRRVVEAMLPYLTERFGNPSSVHFYGQE
                     ARSAVDRARREVAALVNARPNEIVFLSGGTEANNLALRGVAEMAAEHGRHIITSSIEH
                     SSVRGICEALERRDWEVTRLPAYGDGVVRVEDVRKALRPDTVLVTVHLANNEIGTIQP
                     VAEIGELVRERRDAGQRHLRLHTDAVQALGRMRVDVAELGCDLLSMSAHKLHAPKGVG
                     ALYVRRGVRLAPQSLGGHQERERRAGTEAVSLIVAFGEAARLARVELGERVEHMRRLR
                     DRFEAGLAERVPDIVFNGDRERRLPHISNVSFRFIEGEGLLINLDMQGVAVSTGSACS
                     SGSLEPSPVIRALGRDDELARGSIRFSLGMGTTDEDIAYVLDALPRAVENLRRLSPLY
                     QKAQAEGAPVNA"
     gene            2023..2385
                     /locus_tag="VD968_05595"
     CDS             2023..2385
                     /locus_tag="VD968_05595"
                     /inference="COORDINATES: protein motif:HMM:NF013738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein"
                     /protein_id="HYE13900.1"
                     /translation="MPYSNIFKDHLASPRNAGELDDADAVADETNPVCGDRLRLSLRL
                     RGGRIGAARFLAYGCPPTLACGSALAEMLEGMTPERASAITRKDITDALGGLPARRQH
                     AAALAVETLRSALAKLRK"
     gene            complement(2447..3415)
                     /locus_tag="VD968_05600"
     CDS             complement(2447..3415)
                     /locus_tag="VD968_05600"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE13901.1"
                     /translation="MKRRNSLALSPLLLLALTATLAGQEPAQPLVRLNVIVTGEKGKP
                     AGEVRREDVRVFDEGAERAVAYFSKETLPVSYGLVVDNSGSLRTQMNAVIESARIIVE
                     NNAPGDEAFVLRFVDRERINMMQGFTADAARLQRALDEMYVEGGQTALVDAVYLAAEH
                     LQQKSKPAADGPRRRALVLITDGEDRQSYFKPDDLSALLRGSDIQIFCIGLVGALGGD
                     RGLIRPSKREEATELLKRLAAETGGLAYAVKTGEDLLRAVTEISNLLHTQYVVGYAPP
                     ADPSKKSFRRVEVKIADAPQGGKRKAVTRPGYAVAGAPSAEQKKEK"
     gene            complement(3452..6235)
                     /locus_tag="VD968_05605"
     CDS             complement(3452..6235)
                     /locus_tag="VD968_05605"
                     /inference="COORDINATES: protein motif:HMM:TIGR02074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HYE13902.1"
                     /translation="MALRHPPKGYVPPASKGRRGARVVKYEEPPEGFWRRWRRRLIRP
                     ATVVPVIILTTFVVGVLVYYYYSFSQRIDRLLRGEVFTRSAGLYSAPKHLRQGEAISI
                     EDLVARLKRAGYVEKTQQADNSRGRFSVQGAAVEIEPSKDSLIDERRQFPHVRVQFER
                     GGKSVASITDLDSGGARQQGVWLEPELISSVSGSQRERRKVVGFRDLPPHLVKAITVT
                     EDRTFFEHHGINFRGIIRAAVRRYDTDPNSPIARQGGSSITQQLVKNLFLSPEYSYRR
                     KAAEAYMSLIVETRLTKEEIFALYCNEAYLGQRAGFSIKGFGEASEAYFNKDITALTL
                     PEAALLAGLIRSPNRYNPYRHPEVAFERRNQVLKDMAAVGAVSEVEAARAMATELKVA
                     PARGRIDVSEAPYFVDYAQQQLSELLADTSAADRLRIYTTIDMDLQRAAYAAVVKQLA
                     ALDRVQAKRFPPGTLQAALVALRADTGEIVAMVGGRDYEKSQLNRATDAMRQPGSVFK
                     PFVYATALNTAYDPIPRVITAATTYMDEPKTFQAGDQEYSPGNFGEQYSRAPVTVRDA
                     LARSLNVVTVEIAQEVTIGRVMNLATKAGLPKPKRNYLAHALGTNEATPLQVASAYTA
                     FAREGTRATPVAINRVTTGRGTTIAAPTAQKSEVMRPEIAYIMTSMMKDVVNRGTAAK
                     VRARGLKANVAGKTGTSRDGWFAGYTPNIVCVVYVGFDDNSDLGMTGGDSALPIWTDF
                     MTAALALHPEWGGDWQMPAEVEQVEVDTRTGLLPVSDSTSKRPELFVRGTAPTTSADP
                     SADGELTGDELEAPTDEIPLPTPDALEVPPLPEATPQGRQRGEGEGREAPRADGSSRL
                     SGTVTLDIDPTTNLIAAETCPVIRTRTFVIGTEPRRRCGPQYHSDQTFIPSETRPPPR
                     TGPETRPRRVSPQ"
     gene            6484..7569
                     /gene="waaF"
                     /locus_tag="VD968_05610"
     CDS             6484..7569
                     /gene="waaF"
                     /locus_tag="VD968_05610"
                     /inference="COORDINATES: protein motif:HMM:TIGR02195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HYE13903.1"
                     /translation="MKRQEFQREGIRRVVVRGANWVGDAVMTVPALRELRRLLPGAHV
                     TLATRPWAAGLFEGASFVDEIMPVEDGARSFVRSVRGWRRGRFDMAVLFPNAFAPALT
                     AFAARVPLRVGHATDGRSALLTHPVAVPAWHGERHEVFYYLNVVAEVGRMLGEQGGHD
                     FPPRPDTSLKVSAARRREALEFLGERGVRLDRPVVALCPGSTNSRAKRWPAERFAALA
                     DMLADEAGAEVVLVGAREEVEISREVASLASSRPAVLTGETDLARSVAVLSVADLLVT
                     NDTGPAHIAAALGRPVVVVFGPTNPLTTRPYSDSAVVVRRPPECAPCMLRDCPIDHRC
                     MTAVSAREVFERSAEALAARRAAEAVG"
BASE COUNT         1107 a         2620 c         2658 g         1314 t
ORIGIN      
        1 cgcctcgaag cggtcgccgc gctggctcac gtccgtcgag agcctgttga gaagctcgac
       61 gacgagcacg gtgcctgaag gcacggccgc cgcccctccg cccctgcgcg tcggaggcgc
      121 gctgctgctc tccccgccct cttcgtcatc cgggttagca cgagccgcgt cgcccgcggg
      181 cgcgggccct ctgcgcgtaa cgccgccgga aggcaaggac gagtcgaagc cgcggcggct
      241 gtagcccgcc tcgtaaccga cctcgtagcc ctgccggtag ccgtcgctgt agtcctcgag
      301 cgacccgtag gcggcgatgt aagcccggtc ggcgctccgg tagtcagcct tgttgcggta
      361 gtccgcgggc gcgcgcctca actggtcggc ccagcccgac tggtagccgt ccgagtagcc
      421 cgtccggtag ccgcgctcga gcgcgccgta ctgctgatcc tgtgcagaag cgggcggggc
      481 gaggagcgcc gcctgagcga cgagagctag cgcgagggcc agtgggaacg agagcaactg
      541 cgtgcgggtc ttcatcaaat ttttctcctg cgacagaggc tgccaacgcg ttcgggggga
      601 gcttacaaca aacgtccgcg cgagaccatt aaccgccttg acgctcgctt tccgcgcgcc
      661 ttagactcgc ggtcgggcgc tttgcccgcc gagccgcgcg cacgactttc tgccgcctga
      721 gatgccgcgc gccgccccgc gggtttatcg aaaacttgcg gccccgttta cgatgaccgt
      781 ccgcagagtc tatctcgacc acagcgcgac cacgccggtt gaccggcgcg tggtcgaggc
      841 catgttgccc tacctgaccg agcgcttcgg caacccttcg agcgtgcact tctacggcca
      901 ggaggcgcgc tcggccgttg accgagcccg gcgcgaggtc gccgctctcg taaacgcgcg
      961 gcccaacgag atagtcttcc tctcgggcgg cacggaggcc aacaacctcg ccctccgcgg
     1021 cgtcgcggag atggccgctg agcacggccg ccacatcatc acctcttcca tcgagcactc
     1081 ttccgtccgc ggcatctgcg aggctctgga gcggcgcgac tgggaggtga cgcgcctgcc
     1141 cgcatacggc gacggcgtcg tgcgcgtcga ggacgtgcgc aaggcgcttc ggcccgacac
     1201 tgtgctcgtc accgtccacc tcgccaacaa cgagataggc accatccagc ccgtagccga
     1261 gataggcgag ctcgtccgcg aacggcgcga cgcggggcag aggcacctgc gcctccacac
     1321 cgacgccgtg caggcgctcg ggcgcatgcg cgttgacgtc gcggagttgg gctgcgattt
     1381 gctctcgatg tccgcgcaca agctgcacgc gccgaagggc gtcggcgcgc tctacgtgcg
     1441 gcgcggggtt cggctcgcgc cgcagagcct cggcggccac caggagcgcg agcggcgcgc
     1501 ggggactgaa gcagtctcac tcatcgtcgc cttcggcgag gccgcgcgac tggcgcgcgt
     1561 ggagttgggc gagcgcgtcg agcacatgcg ccgcctgcgc gaccgcttcg aggcagggct
     1621 ggccgagcgc gtccccgaca tcgtcttcaa cggcgaccgc gagcggcggc tcccgcacat
     1681 ctcgaacgtc tccttccgct tcatagaggg cgaggggcta ctaatcaacc tcgacatgca
     1741 gggcgtggcc gtctcaacgg gctctgcctg ctcttccggg tcgctcgagc cctcgcccgt
     1801 catacgcgcg ctcgggcgcg acgacgagct cgcgcgcggc tccatacgct tcagcctcgg
     1861 catgggaacg accgacgagg acatcgccta cgtcctcgat gccctgccgc gcgccgtcga
     1921 gaaccttcgc cgcctctcgc ctctctacca gaaggcacag gccgaaggcg cccccgtcaa
     1981 cgcttgaggc gcggtggcga actcgcacac ggctcccttt tagtgcctta ctcaaacatc
     2041 ttcaaagacc accttgcgag cccgcgcaac gccggagagc ttgacgacgc ggacgccgtc
     2101 gccgacgaga ccaaccccgt ctgcggcgac cgccttcgcc tctccctccg gctccgcggc
     2161 ggccgcatag gggcggcgcg cttcctcgcc tacggctgcc cgcccacgct cgcctgcggc
     2221 tccgccctag ccgaaatgct cgaaggcatg acgcccgagc gcgcatctgc tatcacgcgc
     2281 aaggacatca ccgacgccct cggcggcctc cccgcgcgcc gccagcacgc cgccgccctc
     2341 gccgtcgaga cgctccgctc cgcgctcgcc aaattacgaa aataacgtga cagggtaatg
     2401 taaaggccgc agccgggctt tgcgcttgac gacgggatcg ctggttttat ttttccttct
     2461 tctgttcggc ggagggcgcg cccgctacgg cgtagccggg gcgcgtgacg gccttgcgct
     2521 tgccgccctg cggggcgtcg gcgattttga cctcgacgcg gcggaagctt ttcttcgacg
     2581 ggtcggcggg cggggcgtag ccgacgacgt actgagtgtg caggaggttg gagatttcgg
     2641 tgacggcgcg caggaggtct tcgccggtct tgaccgcgta ggcgagcccg cccgtctcgg
     2701 cggcgagacg cttgagcagc tcggtcgcct cctcccgctt gctcgggcgt atgaggccgc
     2761 ggtcgcctcc gagcgcgccg acgagcccta tgcagaaaat ctgtatgtcg ctcccgcgca
     2821 gcagcgcaga gaggtcgtcc ggcttgaagt agctctgcct gtcctcgccg tccgtgatga
     2881 ggacgagggc gcgtcggcgc gggccgtcgg ccgcgggctt cgacttctgc tgcaagtgct
     2941 cggccgcgag atagactgcg tcaacgagcg cggtctgccc gccctcgacg tacatctcgt
     3001 cgagcgccct ctgtaggcgc gccgcgtccg cggtgaagcc ctgcatcatg tttatccgct
     3061 cgcggtcaac gaagcggagc acgaacgcct cgtcgccggg cgcgttgttt tcaacgatga
     3121 tgcgggccga ctcgatgacg gcgttcatct gcgtgcgcag cgaccccgag ttgtcaacga
     3181 cgaggccgta gctcacaggc agcgtctcct tcgagaagta cgcgaccgca cgctcggcgc
     3241 cctcgtcgaa gacgcgcacg tcctcgcgcc tcacctcgcc cgccggcttt cccttctcgc
     3301 ccgtgactat cacgttcagc ctgacgagcg gctgcgccgg ctcctgcccg gcgagcgtcg
     3361 cggtgagcgc gagcagaagg agtggcgaca gtgcgaggct gtttcttctt ttcatacgga
     3421 gtcccgttgt cgaggcttgg agtgccgggc tttactgcgg tgagacgcgg cgcgggcgcg
     3481 tctcggggcc ggtgcgcggc ggggggcgag tctccgatgg gatgaaggtc tggtcggagt
     3541 ggtactgcgg gccgcagcgg cggcgcggct cggtgccgat gacgaaggtg cgagtgcgta
     3601 tgacggggca ggtctcggca gcgatgaggt tggtcgtcgg gtctatgtcg agcgttacgg
     3661 tgcctgagag ccgcgacgag ccgtccgcgc ggggcgcttc cctcccctcg ccctcgccgc
     3721 gctggcggcc ctgcggcgtg gcctcgggca gcggaggcac ttcgagcgcg tcgggcgtcg
     3781 gcagggggat ttcgtccgtg ggggcttcca gctcgtcgcc ggtaagctcg ccgtcggccg
     3841 aggggtctgc cgacgtggtc ggcgccgtgc ctcggacgaa aagctcaggc cgcttcgacg
     3901 tcgagtcgga gacgggaagg aggcccgtgc gcgtgtcaac ctcgacctgc tcgacttccg
     3961 ccggcatctg ccagtcgccg ccccactcgg ggtggagcgc gagcgcggcc gtcatgaagt
     4021 ctgtccagat ggggagggcg gagtcgccgc ccgtcatgcc aaggtctgag ttgtcgtcga
     4081 agccgacata gacgacgcag acgatgttgg gcgtgtagcc tgcgaaccag ccgtcgcgcg
     4141 aggtgccggt cttgcccgcc acgttcgcct ttaggccgcg cgcgcgcacc ttagccgccg
     4201 tgccgcggtt caccacgtcc ttcatcatcg aggtcattat gtacgcgatc tcggggcgca
     4261 tgacctcact cttctgcgcc gtgggcgcgg cgatggtcgt cccccggccc gtcgtgacgc
     4321 ggttgatggc gacgggagtg gcgcgcgtcc cctcgcgcgc gaatgccgtg taggccgagg
     4381 cgacctgcaa aggcgtcgcc tcgttcgtgc cgagcgcgtg cgcgaggtag ttgcgcttcg
     4441 gtttaggcag gcccgccttc gtcgcgaggt tcatcacgcg gcctatggtg acctcctgcg
     4501 cgatctcgac ggtgacgacg ttgaggctgc gtgctagcgc gtcgcggacg gtgacgggcg
     4561 cgcgcgagta ctgctcgccg aagttgccgg gcgagtattc ttggtcgccg gcctggaagg
     4621 tcttcggctc gtccatgtag gtcgtcgcgg ccgtgatgac gcgtgggatg gggtcgtagg
     4681 ccgtgttcag agccgtcgca tagacgaagg gcttgaagac ggagccgggc tggcgcatcg
     4741 cgtcggtcgc gcggttgagt tggctcttct cgtagtcgcg cccgccgacc atcgcgacta
     4801 tctcgcccgt gtcggccctc aaggcgacga gcgcggcctg gagcgtcccc ggcgggaagc
     4861 gcttggcctg cacgcgatcc agggcggcca actgcttgac gaccgccgcg taggctgcgc
     4921 gctgcaagtc catgtcaatg gtcgtgtaga tgcgcaggcg gtcggcggcc gaggtgtcgg
     4981 cgagcagttc ggagagctgc tgctgcgcgt agtcaacgaa gtacggtgcc tcggacacgt
     5041 ctatccgacc gcgggcggga gcgaccttca gctccgtagc catcgcgcgc gcggcctcga
     5101 cctcggagac ggcgccgacg gccgccatgt ccttcaagac ctggttgcgg cgctcgaagg
     5161 cgacctctgg gtggcggtat gggttgtagc ggttcgggct gcgtatgagg ccggcgagca
     5221 gggcggcctc gggcagcgtg agcgcggtta tgtccttgtt gaagtacgcc tcgctcgcct
     5281 cgccgaagcc cttgatggag aagcccgcgc gctggccgag gtatgcctcg ttgcagtaga
     5341 gcgcgaaaat ctcctccttc gtcaggcgcg tctctacgat tagagacatg taggcttcgg
     5401 cagccttccg cctgtaagag tactcgggcg agaggaagag gttcttaacg agctgctgcg
     5461 tgattgagga gccgccctgg cgcgcgatgg gcgagttcgg gtctgtgtcg tagcggcgga
     5521 cggccgcgcg aatgatgccg cggaagttta tgccgtggtg ctcgaagaag gttcggtctt
     5581 cggtgacggt gattgccttg acgaggtgcg ggggcaggtc gcggaagccg acgacctttc
     5641 ggcgctcgcg ctgcgacccc gagacggagc ttatcagctc gggctcgagc cagacgccct
     5701 gctggcgcgc gccgcccgag tcgaggtctg tgatggaggc gaccgatttc ccgccgcgct
     5761 cgaactgcac gcgcacgtgc gggaactgcc gccgctcgtc tatgagcgag tccttgctgg
     5821 gctcgatctc gacggccgcg ccctgcaccg agaagcggcc gcgcgagttg tcggcctgct
     5881 gcgtcttctc gacgtagcct gcgcgcttga gtcgcgccac gaggtcttca atcgagatgg
     5941 cctcgccctg ccgcagatgc ttcggggccg agtagaggcc ggcgcttcgc gtgaagacct
     6001 cgccgcgcag cagccggtca atgcgctgcg agaaggagta gtagtaatag acgagcacgc
     6061 cgacgacgaa ggtcgtgagg attatgacgg ggacgaccgt ggccgggcgt atgagacgcc
     6121 tgcgccagcg ccgccagaag ccctcgggcg gctcctcgta cttgacgacc cgcgcaccgc
     6181 gccggccctt cgaggccggc ggcacgtagc ctttgggtgg atgacgcaga gccatcgaag
     6241 tgatagtaaa tggtaaacag caaatggtaa atgggaaaag aaagcgctgc ttcccgttca
     6301 acatttaccg ggtctgacac tcagcgccgg ttcggccaac tcggcgcccc cgaagccccg
     6361 gcgcacgttt gatgccgccg ccgcaggtcg cggttcaatg ttcccgccct aagcgaatct
     6421 ttactgcttc tttttgtgcc ttcgtgcctt tgtggtaagt tccccttaca gggtttgaag
     6481 gacgtgaagc gccaggaatt tcagcgtgag ggcatcaggc gagtcgtcgt gcgcggcgcg
     6541 aactgggtgg gcgacgccgt gatgacggtg cctgccctgc gggagcttcg ccgcctgctg
     6601 cccggcgcgc acgtcacgct cgccactcgc ccgtgggccg ccggtctctt cgagggcgcg
     6661 agcttcgttg acgagataat gcccgtcgag gacggggcgc gctctttcgt caggtcggtt
     6721 cgcgggtggc ggcggggtcg cttcgacatg gccgtgctct tccccaacgc cttcgcaccc
     6781 gcgctcacag ccttcgccgc gcgcgtcccc cttcgcgtcg gccacgcgac cgacggccgc
     6841 agcgcgcttc tcacgcaccc tgtcgcagtc cccgcgtggc acggcgagcg ccacgaagtc
     6901 ttttattacc tcaacgtcgt cgccgaagtc ggccgcatgc tcggcgagca gggcgggcat
     6961 gacttcccgc cgcggcccga tacgtcgctc aaagtctccg ccgcgcgaag gcgcgaagcg
     7021 ctcgaattcc taggcgagcg gggcgttagg ctcgaccgcc ccgtggtcgc cctctgcccg
     7081 ggctctacca acagccgcgc gaagcgctgg cccgcagagc gcttcgcagc cctcgccgac
     7141 atgctcgcgg atgaggccgg cgccgaagtc gtactcgtcg gcgcgcgcga agaagttgaa
     7201 atctcccgtg aggtcgcctc gctggcgagc agcaggcccg cggtgctcac gggcgagact
     7261 gacctggcgc gctcggtcgc cgtgctgagc gtcgcagacc tgctggtgac gaacgacacg
     7321 ggccctgcgc acatcgcggc cgcgctcggc cgccccgtcg tcgtcgtctt cggcccgacc
     7381 aaccctctga cgacgcgccc ctactctgac tcggccgtcg tcgtccggcg cccgccagag
     7441 tgcgcgccct gcatgctgcg cgactgcccg attgaccacc gctgcatgac ggccgtctcg
     7501 gcgcgcgaag tcttcgagag gtcggcggag gcgctcgccg cacgccgcgc ggcggaggcg
     7561 gtcggatgac ggagccgcta cgcgccgtct tcatagaccg cgacgggacg atctccgaag
     7621 aggtcggcta cgtcaaccac gtctcgcgct accgcgtctt ccccttcgcg gccgaagccg
     7681 tgagggcgct gaacgaagc
//
LOCUS       DASPKR010000205         4075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1061683, whole genome shotgun sequence.
ACCESSION   DASPKR010000205 DASPKR010000000
VERSION     DASPKR010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4075)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4075
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1061683"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..288)
                     /locus_tag="VD968_05615"
     CDS             complement(<1..288)
                     /locus_tag="VD968_05615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13904.1"
                     /translation="MAIDRITVRGARQHNLKDISVEIPRDRLTVITGLSGSGKSSLAF
                     DTIYAEGQRLYVESLSAYARQFLDQLERPDVDSVDGLSPAISIEQKTVSRSP"
     gene            complement(458..1102)
                     /locus_tag="VD968_05620"
     CDS             complement(458..1102)
                     /locus_tag="VD968_05620"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE13905.1"
                     /translation="MSERSIPSRIVRATAQRAVRLTMLGMRRGPHLSRFTMYRELTKA
                     PVAADGRTLSVSGSERLCALLGLKDVFPANFPEYDLRSLPFPDESFDCVVSDQVIEHV
                     EGDPFLAVEETRRVLKTGGVAVHTSCLIYPIHNDGGMMGDLWRFTPEGLAFLCRNFSE
                     VVEVGGWGNQFVPLLDWLGLSFDPVPLSRLHPLNLLATMNDARWPVVTWVVARK"
     gene            1266..2009
                     /gene="pgsA"
                     /locus_tag="VD968_05625"
     CDS             1266..2009
                     /gene="pgsA"
                     /locus_tag="VD968_05625"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HYE13906.1"
                     /translation="MNLPNALTLSRIFVVPLLVAVLLTPFAEDWFGVQRHVLGVSLFL
                     AAAFTDYLDGHIARSRSQVSRLGILLDPIADKLLISAALISLVENRLAPAWAVVIIVG
                     REFAVSGLRSVAAADGLVIAASRWGKFKMMSQVTAVAFLIASSVRGEPPVANFGHAFP
                     AVMFWSVPELRTAVRHLFSSNAPTATDWQVLLYTAGRAMLWVVVLSACYSMFEYFRGF
                     YQTVYTRPATDGAIESPAVSPEVKKASAG"
     gene            complement(2100..2933)
                     /locus_tag="VD968_05630"
     CDS             complement(2100..2933)
                     /locus_tag="VD968_05630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13907.1"
                     /translation="MTCAGFIEQTPPADSPEIVGGTEERERRVFGQGDLVFVSTGSRQ
                     GVAAGQEFSVVRPRGQFSTKFTRKGGSLGVYTQEVGRVRVVRVREAVSVAEVVQSCDN
                     LLFGDLLRPATRRAAPSARADRNLDAFAEPTGRQAGRIVLARDGREMVGPDDVVFVDL
                     GAEDNVRVGDYLTVFRPENHAVLVKYGDEMANNARDDYQSDSKRGGKFSNQAQRVKDV
                     DGSPGGETVKTPEVKRRRPNVPRKVVGELVITRVEGRTATAVVTRVLQEIHTGDHVEV
                     Q"
     gene            3433..3505
                     /locus_tag="VD968_05635"
     tRNA            3433..3505
                     /locus_tag="VD968_05635"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3466..3468,aa:Thr,seq:tgt)
     gene            3527..3614
                     /locus_tag="VD968_05640"
     tRNA            3527..3614
                     /locus_tag="VD968_05640"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3561..3563,aa:Tyr,seq:gta)
     gene            3711..3786
                     /locus_tag="VD968_05645"
     tRNA            3711..3786
                     /locus_tag="VD968_05645"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3744..3746,aa:Gly,seq:tcc)
     gene            3809..3883
                     /locus_tag="VD968_05650"
     tRNA            3809..3883
                     /locus_tag="VD968_05650"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3841..3843,aa:Thr,seq:ggt)
     gene            3935..>4075
                     /locus_tag="VD968_05655"
     CDS             3935..>4075
                     /locus_tag="VD968_05655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HYE13908.1"
                     /translation="MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLSKHNPRIQ
                     FRA"
BASE COUNT          689 a         1321 c         1344 g          721 t
ORIGIN      
        1 cgggctgcgc gagacggtct tctgctcgat ggagatagcg ggggagagtc cgtcaaccga
       61 gtccacgtcc gggcgttcga gctggtctaa aaactggcgc gcgtaggccg acaaagactc
      121 gacgtagagg cgctgcccct cggcgtagat cgtgtcgaag gcgagcgacg atttgcccga
      181 gcccgaaagt cccgtgatga ccgtcaggcg gtcgcgcgga atctcgacgc tgatgtcctt
      241 caggttgtgc tggcgcgccc cgcgcaccgt gatgcggtct attgccattg cctgaaatcg
      301 cccgcggccg ctacagtgag cctcgccggg ccccgcggaa acgaggattg taaaccacgc
      361 gcgcggggcc ggcaaccgac cgaagataag gaacgccgca gcggagcagg taaaaaagca
      421 gggcggcaag caatagggcg ggagcccggc ggaaggctca cttgcgggcg accacccacg
      481 tgacgacggg ccagcgagcg tcgttcatgg tggcgagcag gttcagcggg tggagcctcg
      541 aaagcggcac cgggtcgaag ctcaggccca gccagtccag tagggggacg aactggttgc
      601 cccacccgcc gacctctacg acctccgaga agttgcggca caggaaggcg agcccctccg
      661 gggtgaagcg ccagaggtct cccatcatcc cgccatcgtt gtgtatgggg tagatgaggc
      721 agctcgtgtg aacggcgacg ccgcccgtct tgagcacccg ccgcgtctcc tcgacggcca
      781 ggaacgggtc gccctcgacg tgctcaatca cctggtcgga gaccacgcag tcgaacgact
      841 cgtccgggaa cggcaggctg cgcaggtcgt actcggggaa gttcgcgggg aaaacgtcct
      901 tgagccccag aagggcgcac agccgctccg acccgctcac ggagagtgtc ctcccgtccg
      961 cggccacggg ggccttcgtc aactcgcggt acatcgtgaa gcgcgagagg tgcggccccc
     1021 gccgcatgcc gagcatcgtg agccgcacgg ccctctgagc cgtggcgcgg acgatgcgtg
     1081 aagggatgga gcgttcgctc atggcgggcg tcgtctcacg aaaggacaga gggagtatag
     1141 cccgtacgtc aagcggccgg gcgttgtctt gacaccccgc gagcgcggct cctaaacttc
     1201 gctccgaagt cagcaaccga cgacaggccg taaagattct caggcgggcc gcaaggggga
     1261 ggcgcgtgaa tcttccgaac gcactgacgc tgtcgcgcat cttcgtcgtg ccgctgctgg
     1321 tcgccgtgct gctgacgccc ttcgcggaag actggttcgg cgtgcagcgc cacgtcctcg
     1381 gcgtctcgct cttcctcgcc gccgcgttca ccgactacct cgacggccac atcgcgcgca
     1441 gccgcagcca ggtctcccgg ctcggcatac tcctagaccc catcgccgac aagctgctca
     1501 tctcggccgc gctcatctcg ctcgtcgaga accgtctcgc gcccgcgtgg gccgtcgtca
     1561 tcatcgtcgg gcgcgagttc gccgtctcag gcctgcgctc cgtggccgcg gccgacgggc
     1621 tcgtcatagc cgcttcgcgc tggggcaagt tcaagatgat gtcgcaggtg acggccgtgg
     1681 ccttcctgat agcctccagc gtgaggggcg agccacccgt agccaacttc ggccacgcct
     1741 tcccggccgt gatgttctgg tctgtgccgg agttgcggac ggccgtgcgc cacctctttt
     1801 cgagcaacgc cccgacggcg accgactggc aggtgctcct ctacacggct ggccgcgcga
     1861 tgctctgggt cgtggtgctt tcggcctgct actcgatgtt cgaatacttc cggggcttct
     1921 accagacggt ttatacgcgc cccgcgaccg acggcgccat cgagtcgccc gccgtctcgc
     1981 cggaagtcaa aaaagcctcg gcgggctgag acaagagtca aacggcgagc ggtcagcttc
     2041 cggcattatc tttagccgga agctgaccgc tgattgctga ctgcttattg cctcctaagc
     2101 tactgcacct cgacgtggtc gcccgtgtga atctcctgca ggacgcgcgt gacgacggcc
     2161 gtggccgtgc gcccctcgac gcgggtgatg acgagctcgc ccacgacctt gcgcggcacg
     2221 ttgggcctgc ggcgctttac ctcgggcgtc ttgacggtct cgccgccggg gctgccgtcc
     2281 acgtccttga cgcgctgggc ctggttcgag aacttgccgc cgcgcttgga gtcgctctgg
     2341 tagtcgtcgc gcgcgttgtt cgccatctcg tcgccgtact tgacaagcac ggcgtgattc
     2401 tccggccgga agaccgtcag gtaatcgccc acgcggacgt tgtcctccgc gcccaggtca
     2461 acgaagacga catcgtcagg cccgaccatc tctcgcccgt cgcgcgcaag cacgatgcgg
     2521 cccgcctgcc tgcccgtggg ctctgcgaag gcgtcgaggt tgcggtcggc gcgcgcggac
     2581 ggcgccgccc ggcgcgtcgc ggggcggagc aggtcgccga acagcaggtt gtcgcacgac
     2641 tgcacgacct cggccaccga gaccgcttcg cgcacgcgca cgacccgcac gcgcccgacc
     2701 tcctgcgtat agacgccgag cgagccgccc ttccgagtga acttagtcga gaactggccg
     2761 cgcgggcgca cgaccgagaa ctcctggccg gccgcaactc cctgccgcga gcccgtgctc
     2821 acgaagacca ggtcgccctg cccgaagacg cgccgctccc gctcctccgt gccgcccact
     2881 atctcgggcg agtcggccgg cggcgtctgt tcgatgaagc cggcgcaggt catctgggtc
     2941 tcgcgcgccg ccgggccggg gctgcgctcc gaagaagagg ggagggctgc ggcgcgctgc
     3001 tgaggctgag cggccgaggc gctctcaaca gtctgggcgc ttgccgtcgt ggctcccgcg
     3061 gcgcagaata ggagcgaaaa agcgagaatt ttgcgggtcg tgagcgatct tgtgctacgc
     3121 acggggaatc tccttgtcgg ggtgtggcat ctaacgcgtt cctggccggg acaatcgcgg
     3181 ggtgtctctg agtctggagg ctttttgcgg ggcagtcggc ggaggctcgg ggcggctgtg
     3241 gtcgggccgc gtttcgcccg cctgcgggca ttaatcatcc tactgtctgg cgcgccggga
     3301 cgtcaataaa attgttcaac aaccgttcaa attggcgggc cgcagcgccc gcccgttggc
     3361 ggcttgcgtt ttggcgaagg tgttgttagt attcgcgttt tgccggaagc cgcggattgc
     3421 ttaccgtagt tcgccggtgt agctcagttg gtagagcagc ggttttgtaa accgcgggtc
     3481 gggggttcga gtcccttcac cggctctgtc ctggtttgaa aagctcgcag gggtggtcga
     3541 gtggttaatg gcaccgggct gtaaacccgg cgggttcaca ccctacgtag gttcgaatcc
     3601 taccccctgc accagtaagc gaagaggcta gaggtcagag gtcagaggtc agtagaagca
     3661 atccttattt actgacctct gacctctgac ctctgacctc taacaattgg gcgggagtag
     3721 ctcagttggt agagcatcag ccttccaagc tgagggtcgc gagttcgagc ctcgtctccc
     3781 gctccaaagt ctggcagacg gttagagcgc ccgcgtagct caggggtaga gcgcctcctt
     3841 ggtaaggagg aggtcatgag ttcaaatctc atcgcgggct ccacttaaac tttaggcgta
     3901 aacgaaaact ttactcgaag aggctatcgc gattatggcg aaagagaagt tcgacaggtc
     3961 gaagccgcac gtcaacatcg gcaccatcgg gcacgtcgac cacgggaaga ccactttgac
     4021 ggccgccata acgaaggtct tgtcgaagca caacccccgc atacagttcc gcgcc
//
LOCUS       DASPKR010000206         2252 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1191283, whole genome shotgun sequence.
ACCESSION   DASPKR010000206 DASPKR010000000
VERSION     DASPKR010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2252)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1191283"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1153
                     /locus_tag="VD968_05660"
     CDS             <1..1153
                     /locus_tag="VD968_05660"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016293398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006635 - fatty acid beta-oxidation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HYE13909.1"
                     /translation="PIGRFGGALAGVTAAELGAVAAAESLRRAGLEPGEVQDVVWACA
                     RQAGGGPNVGRQIAYRAGVPETVPASTINQACGSGLKAIVVAAEQIMLGRAGAVLAGG
                     VESMSRVPYYAEGARWGMRMGNAELVDGMYRDGFLDPLSGLVMGETAENLARRYEISR
                     EEQDEYALRSQQRAAAAIDGGRFDDEITPVEVKGRKGETTHFSRDEHPRAGTNIESLR
                     KLPPVFSKDGTVTAGNSSGITDGAAAVVVIGEEALKAAGGRVRPLARIVDYEFAGVAP
                     EIMGIGPVPAVRRLLERRKLTLDGIDLVELNEAFAAQVIACDRELGFDASRLNVNGGA
                     IALGHPIGCTGVRITTTLLHEMQKRSSRLGLATLCVSGGLGVALLVERV"
     gene            complement(1159..2025)
                     /locus_tag="VD968_05665"
     CDS             complement(1159..2025)
                     /locus_tag="VD968_05665"
                     /inference="COORDINATES: protein motif:HMM:NF024874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE13910.1"
                     /translation="MPNSAQLRLESGGGAAPDFSKGSIFFVGTATVILRYAGFTILTD
                     PNFLHAGDHVHLGYGLTSERLTSPALDIDQLPPVDFCVLSHYHGDHFDRVAEERLRKD
                     LPIITTEHAASELKDKGFTAPTALGTWDSITVEKGGAGVTVTSMPGKHGPAGVDFFLP
                     PVMGSMLEFRPSEGRTALRLYITGDTLVHEDLEEIPRRYPEIDLALFHLGGTRIMGVL
                     LTMDAEQGVEAIRIINPRELIPIHYNDYDVFKSPLEDFKRAVEAAGFADRVKYLSHGE
                     TYDFEVAPARWR"
BASE COUNT          366 a          717 c          797 g          372 t
ORIGIN      
        1 gcccatcggg cgcttcggcg gggcgctggc cggcgtgact gcggccgagc tgggcgccgt
       61 ggccgcggcc gagagcttga ggcgcgccgg gctcgagccg ggcgaggttc aggacgtcgt
      121 gtgggcgtgc gcgcgccagg caggcggcgg gccgaacgtc gggcggcaga tagcctaccg
      181 cgctggcgtc cccgagaccg tgccggcctc gaccatcaat caggcgtgcg gctccggcct
      241 gaaggccatc gtcgtcgccg ccgagcagat aatgctcggg cgcgcgggcg ccgtgctcgc
      301 gggcggggtg gagagcatgt cgcgcgtgcc ttactacgcg gagggcgcgc gctggggcat
      361 gcgcatgggc aacgccgagc ttgtggacgg catgtaccgt gacggcttcc tcgacccgct
      421 ctccggcctt gtgatgggag agacggccga gaacctcgcg cgccgctacg aaatctcgcg
      481 cgaggagcag gacgagtacg cgctgcgctc gcagcagcga gccgccgccg caatagatgg
      541 agggcgcttc gacgacgaga taacgcccgt cgaagttaag gggcgcaagg gcgagacgac
      601 tcacttctcg cgcgacgagc acccgcgcgc aggcacgaac atcgagagcc ttcgcaagct
      661 cccgcccgtc ttctcgaagg acggcacggt gacggccggg aactcttcgg ggataactga
      721 cggcgctgcg gccgtcgtcg tcatcggcga ggaggctctg aaggcggccg gcgggcgcgt
      781 caggccgctc gcgcgcatag ttgactacga gttcgcgggc gtcgcccccg agataatggg
      841 cataggcccc gtcccggccg tccgccgact gctcgaacgc cggaagctga ctctcgacgg
      901 cattgatctc gtcgagctca acgaagcctt cgccgcgcag gtcatagcct gcgaccgcga
      961 gctgggcttc gatgcctctc gactaaacgt caacggcggc gcaattgcgc tcggacaccc
     1021 cataggttgc acgggcgtga ggatcacgac gacgctgctg catgagatgc aaaagcgctc
     1081 gtcgcgccta ggcctcgcta ccctttgcgt gagcggtggg ctcggcgtcg cgctcttggt
     1141 cgagcgggtt tgaagtttct accgccatcg cgcgggcgcg acctcgaagt cgtaggtctc
     1201 gccgtgcgag aggtacttga ccctgtcggc gaagccggcg gcctcgacgg cgcgcttgaa
     1261 gtcttcgagc ggcgacttga agacgtcgta gtcgttgtag tgtatgggaa tcagctcgcg
     1321 cgggttgatg atgcgtatgg cctcgacgcc ctgctcggcg tccatcgtga gcagcacgcc
     1381 catgatgcgc gtcccgccga ggtggaagag cgcgaggtca atctccgggt agcggcgcgg
     1441 aatctcttcg aggtcttcgt gcacgagcgt gtcgcccgtg atgtagagcc gaagcgccgt
     1501 gcgcccctct gacgggcgga actcgagcat gctgcccatc acgggcggca ggaagaagtc
     1561 aacgcccgcc ggcccgtgct tgcccggcat cgaagtgacc gtcacgcccg ccccgccctt
     1621 ctcgaccgta atagagtccc atgtgcccag cgccgtcggc gcggtgaagc ctttgtcttt
     1681 aagctccgag gcggcgtgct cggtcgtgat gatggggagg tctttgcgca gccgctcttc
     1741 tgcgacgcgg tcgaagtggt cgccgtggta gtgcgatagc acgcagaagt caacgggcgg
     1801 gagctggtca atgtcgagcg cggggctcgt cagtcgctcg gaagtgagcc cgtagccgag
     1861 gtggacgtgg tcgcccgcgt gcaggaagtt cgggtctgtc aggatggtga agccggcgta
     1921 gcgtagtatc acggtcgcgg tgccgacgaa gaaaatcgag cccttcgaga agtccggggc
     1981 ggcgcccccg cccgactcta ggcgtagctg cgcggagttc ggcattcagg aatcaccctt
     2041 gctcgctggc gttcgtcttg ccggcaatta taggcgcgcc ccgcccgagc gcctgtccta
     2101 tttcatacac aaagcagtcg cgcggccgtt gccttcgcgg cgcgcccgca cgtatcatcg
     2161 gcgcgcctcg ccgccctcgc tttccccaac ctcacgcgaa ggaggattaa gagatgaacg
     2221 cacgacagct tcagaggcgg aaagagataa ca
//
LOCUS       DASPKR010000207         2902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_156155, whole genome shotgun sequence.
ACCESSION   DASPKR010000207 DASPKR010000000
VERSION     DASPKR010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2902)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2902
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156155"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            319..1611
                     /locus_tag="VD968_05670"
     CDS             319..1611
                     /locus_tag="VD968_05670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13911.1"
                     /translation="MTIRLLIGTALLVAAAAAAAGCGGEGRVEPSNSHAPPTAAQALV
                     LKEVASPAGPDSREPELTVSAGGRVILSWVEKVGDKRYALRFAALDEGGAWGEPRVVA
                     EGENWFVNWADFPSVIELSDGSLAAHWLVRSGPGTYAYDVNVSRSSDGGKTWGSAVVP
                     HTDGTQTEHGFVSLIPLADGRLGAVWVDGRETKDLKGGHEEEEAPLPANMQLRYAAID
                     ADGKLSDEAVLDGRVCECCQTSAALTSEGPLVAYRDRSESEVRDIYFVRRQQGAWSGP
                     RAVHADDWRIQGCPVNGPSVAADGRRAALAWYTEEGDSPSVKVAFSLDAGASFGAPVR
                     VDDGDAMGRVDVVLLADGSALVCWMAGGAEGGANKVRRVSADGSLGPVAVIARTDASR
                     ASGFPRMARAGGTVHFAWTQFGKPSQVKTATADVSAFK"
     gene            complement(1623..2543)
                     /locus_tag="VD968_05675"
     CDS             complement(1623..2543)
                     /locus_tag="VD968_05675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13912.1"
                     /translation="MPLAVELALSVVSLSVLCLFSAPSAGAAVFRDRASFEAASQNLH
                     TLDFESVGRFDYWRGDTIDGLHFFNTGFSVTVGTWQGAQSKALIAQGVPEITYLRVEL
                     PPGTTAVGLDQFSRPMEVMTSAGEKAFMAQGDGSNFVGFVSEAPMAWLAVTLTEPEPT
                     PPAVLDNLTYGQRRAGNEPPGPLLLTYGATGRAAAFESVGLTPEPFAVETPATHNLSA
                     DGRTRVTLLVAGVRLDAPGEEAFVTARAVGSQQRVFDLPVESVGRAKNLTWLSQVTVR
                     LPDELSGAGDVSVSVTVRGVESNKVTLRVD"
BASE COUNT          438 a          966 c         1053 g          445 t
ORIGIN      
        1 agttgacgtg gacgacgtgc atgtcgcgga gcggctcggc cttagcgagt atccgctcga
       61 cggcctccgc cccgacgaac tgttcgtagt cctcgacagt aatcctgtgt tgttccataa
      121 aggcccggcc cggatggccc ccgcccgtct gactgtcgtt tatcggttcg ggagggatta
      181 tacccgccac ggccgccggg cgccctctcc gggcgcgcgt aaaaaaatct aatcgggcgg
      241 ctggccggcg gcggcgctcg gcgctaacat actcgcggcc cgacttcggg ccggcgcacc
      301 tccgtttcaa cgaagccgat gacaatcaga cttcttatcg ggacagcgtt gctcgtcgcc
      361 gctgcggcgg cggcggccgg ctgcggcggc gaaggccgtg tcgagccgtc taactctcac
      421 gcgccgccga cggcggcgca ggcgctcgtg ttgaaggaag tggcctcgcc cgcgggcccg
      481 gacagccgcg agccggagct gaccgtgtcg gcgggcgggc gcgtcatact gagctgggtc
      541 gagaaggtcg gcgataagag gtacgcgctc cgcttcgccg cgctcgatga aggcggcgcg
      601 tggggcgagc cgcgcgtggt cgcggagggc gagaactggt tcgtcaactg ggccgacttc
      661 ccctcagtca tagagctttc ggacggctcg ctcgccgccc actggctcgt caggagcggc
      721 cccggcactt acgcctacga cgtgaacgtc tcgcgctcaa gcgacggcgg gaagacctgg
      781 ggcagcgccg tcgtcccgca caccgacggc acgcagaccg agcatggctt cgtctccctc
      841 atcccgctcg cggacggccg cctcggcgcc gtgtgggtgg acgggcgcga gacgaaggat
      901 ttgaagggcg gccacgagga ggaggaagcg ccgctccccg ccaacatgca gctccgctac
      961 gccgccatag acgccgacgg gaaactatcg gacgaggccg tgctcgacgg gcgcgtctgc
     1021 gagtgctgtc agacctcggc ggcgctcacg tcggaaggcc cgctggtcgc ctaccgcgac
     1081 cgctccgaga gcgaggtgcg cgacatatat ttcgtgcggc ggcagcaggg cgcctggagc
     1141 gggccgcgcg cagtccacgc ggacgactgg cggattcaag ggtgcccggt caacgggcct
     1201 tcggtcgcgg ccgacgggcg gcgcgcggcg ctcgcctggt acacggagga gggcgactcg
     1261 ccgagcgtga aggtggcctt ctcactggac gcgggcgcga gcttcggtgc gcccgtgcgc
     1321 gttgacgacg gcgacgccat ggggagggtt gatgtcgtgt tgctggccga cggctctgcg
     1381 ctagtatgct ggatggcggg cggggcggaa gggggcgcga acaaggttcg ccgcgtctcg
     1441 gcggacggct cgctcggccc cgtcgccgtc atcgcgcgca cggacgcctc gcgcgcgagc
     1501 ggcttcccgc gcatggctcg cgccgggggg acggtgcact tcgcctggac gcagttcggc
     1561 aagccctcgc aggttaagac ggccacggcc gacgtgagcg ccttcaagtg aatttggagg
     1621 aatcagtcca cgcgcagcgt caccttgttg ctctcgacgc cgcggacggt gacggagacg
     1681 ctcacgtctc cggccccgga gagctcgtcg gggaggcgca ccgtcacctg cgaaagccat
     1741 gtcaggttct tcgcgcggcc gacgctttcg accggcaggt cgaagacgcg ctgctgcgag
     1801 cctacggcgc gcgccgtgac gaaagcctct tcgccgggcg cgtcgagccg gacgcccgcg
     1861 accaagagcg tgacgcgcgt gcgcccgtcg gcgctgagat tgtgcgtggc gggggtctct
     1921 acggcgaagg gctcgggcgt caggccgacc gactcgaacg cggcggcgcg ccccgtcgcg
     1981 ccgtaggtga gcagcagcgg cccgggcggc tcgttgccgg cgcgccgctg gccgtacgtg
     2041 aggttgtcca agacggcggg cggggtcggc tcgggctcgg tgagcgtgac ggccagccac
     2101 gccatagggg cctcggatac gaagccgacg aagttcgagc cgtccccctg agccataaac
     2161 gccttctccc ccgcggaggt catgacctcc atcggccgcg agaactggtc gaggcccacg
     2221 gccgtcgtcc ccggcgggag ctcgacgcgg aggtatgtaa tctcgggaac gccctgggcg
     2281 atcagcgcct tgctctgcgc gccctgccac gtgccgacgg tgaccgagaa ccccgtgttg
     2341 aagaagtgaa ggccgtctat ggtgtcgccg cgccagtagt cgaaccggcc gaccgactcg
     2401 aagtccaggg tgtgcagatt ctgtgaggcc gcctcgaagg aggcgcggtc gcggaagacc
     2461 gccgcgccgg cgctcggcgc cgagaagagg cagagcactg acagagagac gaccgacaga
     2521 gcgagttcca ccgcgagggg catagctacc gacctccttt gtggcgggaa gtttatgctg
     2581 cccggcgctc cgccgcaaga ttttcttcgc gtgaccgccg acgcgggcgc cttcggttaa
     2641 gccgggaccg agccccgcgc gctctctcaa ccggcagcga tttcccacaa ccggaggggg
     2701 aaatcgcgca tccgagtttc cctcgcgcgg cggaatttgg cataatgccg gccggcgtgg
     2761 ccttactttg taacaagccc ggtggatagt ctttaacggc ggcagtcttt ctccgatggt
     2821 taaacggctc acggcgatat tcctcctgct ggcgctcggc gccggcgttg cctccggcgc
     2881 gccgctgcac gccggggcgg ag
//
LOCUS       DASPKR010000208         3051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_26255, whole genome shotgun sequence.
ACCESSION   DASPKR010000208 DASPKR010000000
VERSION     DASPKR010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3051)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3051
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26255"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..242
                     /locus_tag="VD968_05680"
     CDS             <1..242
                     /locus_tag="VD968_05680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13913.1"
                     /translation="GPEVERLMLAQPAVNLEVRDDEGVLGVEFPEGVDELCFREAGFI
                     NDPERLKLLFRLFAAVLDRLRRMGSACEGTPGLSL"
     gene            complement(293..364)
                     /locus_tag="VD968_05685"
     tRNA            complement(293..364)
                     /locus_tag="VD968_05685"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(330..332),aa:Gly,seq:ccc)
     gene            complement(407..1546)
                     /locus_tag="VD968_05690"
     CDS             complement(407..1546)
                     /locus_tag="VD968_05690"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HYE13914.1"
                     /translation="MGGSTEPDWRRLRADFPVTRRMAYLNSAGAGPVSSRVLEAAGEY
                     YREAAESGDRAWDAWLARRERAREGVARLINAEPDEIAFTTNTSTGMNLIADALESIG
                     RVVSCELEFPVSTIPWMHRGLSVQMVKARDGEVHAEDVLRAAGAETAVLSLSHVQYSN
                     GFRMPVEEIGANKGRHVFVLNASQSAGVLPIDVKRMGVDALCATGHKWVLAGYGSGFV
                     YLSRGLLARTKPRAISWMSVEDPFDMRNDSYRLRADAAARAETGCPHFAGIFALGEAA
                     RYLLEVGAESVESRALALNRRLTESLTAAGWKVLSPLAREGSRSAETLVEAAEPARVV
                     RHLSRSGVAVTVKPEGFRASTHFFNDEEDIARLVSALPEPDRRPV"
     gene            1643..>3051
                     /gene="lysA"
                     /locus_tag="VD968_05695"
     CDS             1643..>3051
                     /gene="lysA"
                     /locus_tag="VD968_05695"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR01048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HYE13915.1"
                     /translation="MQTSAAAPAWAIPDHLEEREGRLFVGGADACALAREHGSPLFVF
                     SEPRIRSNVARLRAAAERAARPVRFFYASKANSLMGVLAAVRDAGIDCEVNSGGELFK
                     ALRAGFRPEQIIFNGTSKTEAEVDEAIAAGIYSINVDSLYEIELIEARARLLGKRARV
                     ALRLVPEIGTRSHLGLQTALLTSKFGITSAEVPEAFRRALRHPELLHVCGIHIHVGSQ
                     TPDVEPFAAAFKTMWEHLKAVHQETGHALEHINVGGGIPVNYLRDRTQADELPEGERD
                     MLGAELEPSDVLSAALRAARDSARDAEAEHLLERLTVLLEPGRSVIADAGVLLTRVRN
                     IKRRPETGDVWLLTDAGFNLLLSMTTYKWYYQVVSATRADAAPDSQYKIAGPLCDSGD
                     VYFDIEREGRLPDYRRLPADVRPGELLALLNTGAYTIAQMFPYNGRPLPAVVMAREGG
                     GVELIRRRDTYEDLLHNEI"
BASE COUNT          488 a         1093 c          994 g          476 t
ORIGIN      
        1 ccggcccgga ggtcgagcgg ctgatgctcg cgcagccggc tgtcaacctc gaagtgcgcg
       61 acgacgaggg cgtgctcgga gtcgagttcc ccgagggcgt tgacgagctt tgcttccgcg
      121 aggccggctt catcaacgac cccgagcgcc tcaagctcct cttccggctc ttcgccgccg
      181 tgctcgaccg cctccgccgt atgggctccg cctgtgaggg tacgcccggc ctctccctct
      241 gaaatgaaaa acgccgggcg ctcccacccg gcgctgacac tctaaagtta caagcgcgag
      301 acggggatcg aacccgcaac cctcggcttg ggaagccgat gctctaccat tgagatactc
      361 gcgcgctcgg acgcgtagga aagatactta aggttcgcgc ccggtgtcaa acaggccgcc
      421 ggtcgggctc cgggagggcg gagacgaggc gggcgatgtc ctcttcgtcg ttgaagaagt
      481 gggtggaggc gcggaagcct tcgggcttga cggtgacggc gacgccgctg cgcgacaggt
      541 gcctgacgac gcgggcgggc tctgccgctt cgacgagagt ctcggccgag cgcgacccct
      601 cgcgcgcgag cggcgagaga actttccagc cggcggccgt gaggctctcc gtgagtcggc
      661 ggttcagggc gagcgcgcgg ctttccaccg actcggctcc gacttcgagc aggtatcggg
      721 cggcctcgcc gagcgcgaaa atgcccgcga agtgagggca gcctgtctcg gcgcgcgcgg
      781 cggcgtcggc tctcagtcgg taagagtcgt tgcgcatgtc gaaggggtct tcgacgctca
      841 tccagctaat cgccctcggc ttcgtgcgcg cgaggagccc gcgcgagaga tagacgaagc
      901 cggagccgta gccggcgagc acccacttgt ggcccgtcgc gcatagcgcg tccacgccca
      961 tgcgcttcac gtcaatgggc agcacgcccg ccgactggct cgcgttcagg acgaagacgt
     1021 gccgcccctt gttcgcgcct atctcctcga cgggcatgcg gaagccgttc gagtattgga
     1081 cgtggctcaa ggacaggacg gccgtctcgg cgcccgccgc gcgcagcacg tcctccgcgt
     1141 gaacctcgcc gtcgcgcgcc ttcaccatct gcacgctcag gccgcggtgc atccacggga
     1201 tcgtcgagac cgggaactcc agctcgcacg agacgacgcg gccgattgat tcgagcgcgt
     1261 cggcgatgag gttcatgccc gttgacgtgt tcgtcgtgaa ggctatctcg tcgggctcag
     1321 cgttgatgag ccgggcgacg ccctcgcgcg cacgctcgcg cctcgcgagc caggcgtccc
     1381 aggcgcggtc gcccgactcg gccgcctcgc ggtaatactc gcctgccgct tcgagcacgc
     1441 gcgaagagac aggccccgcg ccggcgctgt tcaggtaggc catgcgccgc gtcacgggga
     1501 agtcggcccg aagccgacgc cagtcaggct ctgtgctccc gcccaaactc tcaacctctg
     1561 cttgacgctc gcgggcgcgc ggactatctt cgcacccgtc cggactttat ctttaagcct
     1621 tcaaaacgga gcagcccgat tgatgcagac ttccgcggcc gcgcccgcgt gggccatacc
     1681 cgaccacctt gaagagcgcg aagggcgcct cttcgtcggc ggcgcggacg cgtgcgcgct
     1741 agcgcgcgag cacggctcgc cactgttcgt cttctccgag ccgcgcatac gctctaacgt
     1801 cgcgaggctc agggccgcgg ccgagcgcgc cgcgcgcccc gtccgcttct tctacgcctc
     1861 gaaggcgaac tcgctgatgg gcgtcctcgc ggccgtgcgc gatgccggca tagactgcga
     1921 ggtcaacagc ggcggcgagc tattcaaggc cctgcgcgcc gggttccgcc ccgaacagat
     1981 aatcttcaac ggcaccagca agaccgaggc ggaggttgac gaggccatcg ccgccggcat
     2041 ctactcaatc aacgttgact cgctctacga gatcgagctg attgaagcac gcgcgcggct
     2101 gctcggcaag cgggcgcgcg tggcgctccg gctcgtcccc gagataggca cgcgctctca
     2161 cctcggcctt cagaccgcgc tgctcacgtc gaagttcggc atcacctccg cggaagtccc
     2221 cgaggctttc cgccgcgccc tgcgccaccc ggagcttctg cacgtctgcg gaatacacat
     2281 acacgtcggc tcgcagacgc cggacgttga gcccttcgcc gccgccttca aaacgatgtg
     2341 ggagcacctg aaggccgtgc atcaggagac gggccacgcg ctcgaacaca tcaacgtcgg
     2401 cggcggcatc cccgtcaact acctgcgcga ccgcacgcag gccgacgagt tgccggaggg
     2461 cgagcgcgac atgctcggcg cagagcttga gccctcggac gtgctctcgg ccgcgctgcg
     2521 cgccgcgcgc gactcggccc gcgacgcgga ggccgagcac ctgctcgaac gcctcacggt
     2581 ccttctggag cccggccgca gcgtcatcgc cgacgcggga gtgctgctga cgcgggtgcg
     2641 caacatcaag cggcgccccg agaccggcga cgtgtggctc ttgaccgacg ccggcttcaa
     2701 cctgctgcta tcgatgacga cttacaagtg gtactaccaa gtcgtctcgg ccacgcgcgc
     2761 cgacgccgcg cccgactctc aatacaagat tgccggcccc ttgtgcgact cgggcgacgt
     2821 gtatttcgac atcgagcgcg aagggcgcct gcccgactac cgacgcctcc ccgccgacgt
     2881 gcggcccggc gagctgctcg cgctgctcaa caccggcgcc tacaccatcg cgcagatgtt
     2941 cccctacaac ggccgcccgc tgcccgccgt cgtcatggcg cgcgaaggcg gcggcgtgga
     3001 actgatccgc cgccgcgaca cctacgaaga cctgctccac aacgagattt a
//
LOCUS       DASPKR010000209         6556 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1320845, whole genome shotgun sequence.
ACCESSION   DASPKR010000209 DASPKR010000000
VERSION     DASPKR010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6556)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6556
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1320845"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            47..1507
                     /gene="gatA"
                     /locus_tag="VD968_05700"
     CDS             47..1507
                     /gene="gatA"
                     /locus_tag="VD968_05700"
                     /inference="COORDINATES: protein motif:HMM:TIGR00132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HYE13916.1"
                     /translation="MTVPGNTIEQLRAKLSGGGASPASVTASALDAAESLNPALNSFL
                     QIDREGAARRADELASEPSEGRPLYGVPVAVKDNICVRGMQATCGSRILAGYRPPYDA
                     TVTERLLDAGAVIIGKTNCDEFAMGSSNENSAFGPVRNPWGTERVPGGSSGGSAAAVA
                     SRVVPVSLGSETGGSVRQPASLCGIVGVKPTYGRVSRYGLVAFGSSLDQVSVFGLTVR
                     DAALVLGAIAGRDARDSTTADVPVPDYAAALTGDAAGARIGVPRALFGEGLDAGVRER
                     VEAAIEAYRRLGAEIVDVELPHARYSIAVYYIIATAEASSNLARFDGVRYGHRTESPQ
                     DLRQMYRRTREEGFGAEVKRRIMLGTYVLSSGYYDAYYLKAQKVRTLIRRDFLRAFET
                     CDAILTPTSPTPAFRLGEKTDDPLAMYLSDIYTCMANLAGVPGISVPCGLSEGLPVGF
                     QLMGRHWGEPDLFRLAHAYEQAHPLTERPAVMAAAP"
     gene            1608..2909
                     /locus_tag="VD968_05705"
     CDS             1608..2909
                     /locus_tag="VD968_05705"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="caspase domain-containing protein"
                     /protein_id="HYE13917.1"
                     /translation="MKNTPLAHALILIFLLLLLSPLPFPSRAQERQITVQGPREGRRV
                     ALVIGNSAYAFAPLKNPANDARDVAQALRELGFEVTHKENLSQKEMKRAVRDFGGAIR
                     GGVGLFYYAGHGVQVKGVNYLVPVGAEIASEEEVEYECVDIGFVLAQMESAANGMNLV
                     ILDACRNNPFARSFRSVSRGLALMDAPAGTLIAYATAPGSIASDGDGRNGIYTQELLK
                     FMRVPNLSVEEFFKQVRISVRGITQGKQTPWESSSLIGSFYFNRTGAAAPTSAASAPE
                     LEAPAGVPRPPAPVKKAAQGRAAVRHFVMELDSCKRSGADVTCHLMVTNESEESRQLT
                     LCHSDHRATRRGMDASKAVDTVGNDYRVMESQIGTKKFRNAYYNQAVLAPGVGMKLLL
                     KFENVADESAAFSLLRVAIYGDSTGVVALYYADFRDVPIER"
     gene            3042..3608
                     /locus_tag="VD968_05710"
     CDS             3042..3608
                     /locus_tag="VD968_05710"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HYE13918.1"
                     /translation="MTDEELLRMAARGDESAFLTLYERHKGAVFRFAFRMLGSAALAE
                     EVTHDCFVGLVRAPARFDASRAALRTYLYAAARNLACKHFRRRGTEFPFEEADDALPA
                     DESEGPLRKLLDAELASEVRRAVSQLPPLQREVVVLVEYEELTLAEAAAVVGADVGAV
                     KSRLHRARQSLRRSLSFYIKRNGGAVSA"
     gene            3622..4251
                     /locus_tag="VD968_05715"
     CDS             3622..4251
                     /locus_tag="VD968_05715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13919.1"
                     /translation="MSDEKRQTRLLPFRRRRAGVARGGAAAADGRARDEGADAELTAL
                     LRAWEAPAPRDEARARLLADFRSRPARQSLWKRFLTASVAVPVPVAACACAALVALTA
                     LSLAARVAAPSAEGASGAAARPPQEVRVVEVPVPFERVVTRYAQAARKEEPGARRAAR
                     TSPRRPKAEGAGSGRDAETSYFTRVDMAEFEPADDMKMRIIKRGKSDED"
     gene            4241..5332
                     /locus_tag="VD968_05720"
     CDS             4241..5332
                     /locus_tag="VD968_05720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13920.1"
                     /translation="MRIRSALLLLAAFCLLTASPQARAADSAQENRSQLIVPLKSGTF
                     VTFTTEAAPAGSPEVSLSFIESEDKPNLIHRVFVDKANELFFGYELLVEPVAPGARQF
                     RVSVRPLSAEYLQALRARPAFQRRKLHPSYNDSAFSTAPQTVGDGDTFALDVLQSTRT
                     GAKIVDVITVSLSDPRLQEPPASATPARDYTLEDVYLHVTDHKLLINGEPVFRGAGGG
                     CAGPLVWFSLRERGRFIFSLVPRAGYDFQKVGRVEHNKISLTWGGDRYEWVSSAPVVG
                     IGGNWNLWVLHDPDYSFGLFDQAEARKGGAESFDESLRKSARRARSRAGFGVIPEQPE
                     QSKPARQPDRVNVIIGAANTMESLLPKKQ"
     gene            5358..>6556
                     /locus_tag="VD968_05725"
     CDS             5358..>6556
                     /locus_tag="VD968_05725"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HYE13921.1"
                     /translation="MKRNALFRRAALAALVPVLCAAARAQESGAPKVEVGAQYSSLSI
                     TLPGRFSTGTDNAAGVGARVTFNVTNYLALEAEGNFYPTRTVLTFASGGRAEQLQAGV
                     KVGKRMERWGLFAKARPGFVSFDETLRPVAVELVDSGGMTFPILRFERERKTHFSVDV
                     GGVLEFYPSRSMVVRFDAGDTIIRYGRHDVPLPFILEPGAPFQPVGQEEAQVKHNFQF
                     TAGVAYRFGGDDGEELEAPSEPGRDRVRRFEVGAQFSSLLLNLPDSDSIFFGSFGPDT
                     EPEVGFGGRLTFNLSDSVAVEAEGNLYTRESFPATSVGGFPAQLQAGVKAGRRWERWG
                     LFAKARPGLVSFSRVRQLVSTQQFTFEGREFTLGTFEDRRKNYFSMDVGAVVEFYHSR
                     RFFSRFDA"
BASE COUNT         1035 a         2284 c         2217 g         1020 t
ORIGIN      
        1 ttctaagcag ccgcgccgac cgctcgcact tttcaagagc cctcaaatga cagtccccgg
       61 aaataccatc gaacaactgc gcgcgaaact ttcgggcggc ggcgcaagcc ccgcctccgt
      121 caccgcgagc gcactcgacg ccgccgagag cttaaacccc gcgctcaact ccttcttaca
      181 gatagaccgc gagggcgccg cgcgccgcgc cgacgagctg gcgtcggagc cctccgaggg
      241 gcggccgctc tacggcgtcc ccgtcgccgt caaggacaac atatgcgtgc gcgggatgca
      301 ggccacctgc ggctcgcgca tactcgccgg ctaccgcccg ccctacgacg cgaccgtgac
      361 cgagcggctg ctcgacgccg gggccgtcat cataggcaag accaactgcg acgagttcgc
      421 gatgggctcg tcgaacgaga actcggcctt cggccccgtt cgcaacccgt ggggcacgga
      481 gcgcgtcccc ggaggctctt cgggcgggtc tgcggcggcc gtcgcgtcga gagtcgtgcc
      541 ggtctcactg ggctcggaga cgggcggttc cgtgcggcag ccggcgagcc tgtgcggcat
      601 cgtcggagtc aagccgacct acggccgggt gtcgcgctac gggctcgtcg ccttcggctc
      661 ttcgctagac caggtgagcg tcttcggcct caccgtgcgc gacgcggcgc tcgtgctcgg
      721 cgcgattgcg ggccgcgacg cgcgcgactc gacgaccgcg gacgttcccg tccccgacta
      781 cgcagcggcc cttacgggcg acgcggccgg cgcgcgtatc ggcgtcccac gcgctctctt
      841 cggcgagggg ctcgacgcgg gcgtgcgcga gcgagtcgag gcggcgattg aggcttacag
      901 gcgtttgggc gccgagatag tggacgtgga actcccgcac gcgcgataca gcatcgccgt
      961 ctattacatc atcgctaccg cggaggcttc ctcgaacctc gcgcgcttcg acggcgtgcg
     1021 ctacggccac cgcacggagt cgccgcaaga cctccggcag atgtaccggc gcacgcgcga
     1081 ggagggcttc ggcgccgagg tcaagcgccg aatcatgctc ggcacctacg tcctctcctc
     1141 cggctactac gacgcctact acctgaaggc gcagaaggtt cgcacgctca tacgccgcga
     1201 cttcctccga gccttcgaga cgtgcgacgc catactgacg cccacgtcgc cgacgcccgc
     1261 cttccgcctc ggcgagaaga ccgacgaccc gctcgccatg tacctgtcag acatctacac
     1321 ctgcatggct aacctcgcgg gcgtacccgg cataagcgtc ccgtgcgggc tctccgaagg
     1381 gctgcccgtc ggcttccaac tcatgggccg ccactggggc gagcccgacc tgttccgcct
     1441 cgctcacgcc tacgagcagg cccacccgct cacggagcgc cctgccgtga tggccgccgc
     1501 gccgtagagc ttcagttaaa ggcttcacgc ccgacccacg gcctcaagct gcgtgggcaa
     1561 cgctgaagcc gcggcgcgcg agtcgcggcc gtccgcggga gttttttatg aagaacaccc
     1621 ccttagcgca cgccctcatc ctcatatttc ttcttctgct gctgagcccg ctccctttcc
     1681 cctcgcgcgc gcaggagagg cagataaccg tccaaggccc gcgcgagggg cggcgcgtcg
     1741 cgctcgtcat cggcaatagc gcctacgcgt tcgcgccgct gaagaacccg gccaacgacg
     1801 cgcgcgacgt ggcgcaggcc ctgcgcgaac tcgggttcga ggtgacgcac aaggagaatt
     1861 tgagccagaa ggagatgaag cgcgccgtgc gcgatttcgg cggcgcgata cgcggcggcg
     1921 tggggctttt ctactacgcg ggccatggcg tgcaggtgaa gggcgtcaac tacctcgtcc
     1981 ccgtgggcgc cgagatcgcc agcgaggagg aggtcgagta cgagtgcgtg gatatcggct
     2041 tcgtgctggc gcagatggag agcgccgcca acggcatgaa ccttgtcatc ctcgacgcgt
     2101 gcaggaacaa ccccttcgcg cgaagcttcc gctccgtctc gcgcgggctg gcgctgatgg
     2161 acgccccggc ggggacgctg atcgcctacg ccaccgcccc cggctctatc gccagcgacg
     2221 gcgacgggcg caacgggatt tacacccagg agcttttgaa gttcatgcgc gtgccgaacc
     2281 tgagtgtgga ggagttcttc aaacaggtca gaatctccgt caggggcatc acgcagggca
     2341 agcagacgcc ttgggaatcg tcctcgctca tcggcagctt ctacttcaac cgcacgggcg
     2401 cggccgcgcc gacctcggcg gcctccgccc cggagctcga agcgcccgcg ggcgtcccgc
     2461 ggccccccgc gcccgtcaag aaggccgcgc aagggcgtgc cgccgtgcgg catttcgtca
     2521 tggagttgga ttcgtgcaaa aggtcgggtg cggacgtgac gtgccacctg atggtgacga
     2581 acgagtccga ggagagccgc cagctcacgc tctgccactc tgaccaccgc gcgacgcgca
     2641 gggggatgga cgcgtcgaag gccgtggaca cagtcggcaa cgactacaga gtgatggaat
     2701 ctcaaatcgg gacgaagaag ttcaggaacg cttactacaa ccaagcagtc ctcgcgccgg
     2761 gggtgggcat gaagctgctg ctgaagtttg agaacgtcgc cgacgagagc gctgctttct
     2821 cgctgctgcg cgtggcgatc tacggcgact cgaccggcgt cgtcgctctg tactacgccg
     2881 acttcaggga cgtgcccatc gaaagatgac gccgcctctc tcgctgccgg cggcgaaagt
     2941 tttttgacgc ccgcggcgta tctttttttg ccctccgcgg taatcacacg acagcaaggc
     3001 caattttgaa ggggggcggg cccgcgggcg gcccggccga gatgaccgac gaagaactcc
     3061 tgcggatggc cgcgcgcggc gacgagtcgg ccttcctcac cctctacgag cggcacaagg
     3121 gggcggtctt ccgcttcgcc ttccgcatgc tcgggtcggc ggcgctggcc gaggaggtca
     3181 cgcacgactg cttcgtgggt ctcgtgcgcg cgcccgcgcg cttcgatgct tcgcgggcgg
     3241 cgctccgaac gtacctctac gccgccgcgc gcaacctcgc ctgcaagcac ttccgaaggc
     3301 gcgggacaga gttccccttt gaggaggccg acgacgcgct cccggccgac gaatccgaag
     3361 ggcctctgcg caagctcctc gacgcggagc tggcatcgga agtgaggcgc gccgtctcac
     3421 aacttccgcc cttacagcgc gaggtcgtcg tgctcgtcga gtacgaggag ttgacgctgg
     3481 cggaggcggc ggccgtcgtg ggcgccgacg tgggcgccgt caagtcgcgc ctgcaccgcg
     3541 cgcgccagtc gctcaggcgc tcgctctcct tctacataaa acgcaacggc ggggcggtct
     3601 ccgcgtgaaa ggctctgtgc gatgagtgac gagaagaggc agacgagact tttgccgttc
     3661 cgccggcggc gcgcgggcgt cgcgcgcggc ggcgctgccg cggcggacgg ccgggcgagg
     3721 gacgaaggcg ccgacgccga gttgaccgcg ctgctccgcg cgtgggaggc gcccgctccg
     3781 cgcgacgagg cgcgcgcccg actgctcgcc gacttccgct cgcgccctgc gcgccaaagc
     3841 ctctggaagc ggtttctcac agcgagcgtg gccgtccccg tccccgtcgc ggcgtgcgcg
     3901 tgcgccgcgc tggtcgcgct cacggccttg tccctcgccg cgcgcgtggc ggccccctcg
     3961 gcggaggggg catcgggcgc ggcggcccgg cccccgcaag aggttcgggt cgtcgaagtc
     4021 cccgtgccgt tcgagagggt cgtcacgcgc tacgcgcagg ccgcgcggaa ggaagagccg
     4081 ggggcgcggc gcgcggcgcg cacgtcgccg cggaggccga aggcggaggg cgccgggagc
     4141 gggcgcgacg cagagaccag ctacttcacg cgcgttgaca tggcggagtt cgagcccgcc
     4201 gacgacatga agatgaggat aatcaagagg ggaaagtcag atgaggatta ggagcgcact
     4261 tctcttgctc gccgccttct gcttgttgac agcgtcgccg caggcacgcg cggccgactc
     4321 ggcgcaggag aacaggtcgc agttgatagt gccgctcaag agcggcacct tcgtcacctt
     4381 cacgacggag gcggcgcccg ccggctcgcc cgaagtctcg ctgagcttca tagagtccga
     4441 ggacaagccg aacctcatcc accgcgtctt cgtggacaag gcgaacgagc tcttcttcgg
     4501 ctacgagctg ctggtcgagc ccgtggcgcc gggcgcgcgc cagttccgcg tctccgtgcg
     4561 ccccttgagc gcggagtacc tacaggccct tcgcgcgcgg cccgcgttcc agcgccgcaa
     4621 gctccacccg agctacaacg actcggcctt ctcgaccgcc ccgcagacgg tcggcgacgg
     4681 cgacaccttc gcgctcgacg tgcttcagag cacgcgcacc ggcgcgaaga tcgttgacgt
     4741 gataacggtc tcgctctcag acccgcgcct acaggagccg cccgcgagcg ccacgcctgc
     4801 gcgcgactac acgctcgaag acgtttacct gcacgtgacc gaccacaagc tgcttatcaa
     4861 cggcgagccc gtcttccgcg gcgcgggcgg cggctgcgcc gggccgctcg tctggttctc
     4921 gctgcgcgag cgcggccgct tcatcttctc gctcgtgccg cgcgccggct acgacttcca
     4981 gaaggtcggc cgcgtcgagc acaacaagat ttcgctcact tggggcggcg accgctacga
     5041 gtgggtttcg agcgcgcccg tcgtaggcat cggcggcaac tggaaccttt gggtgctgca
     5101 cgaccccgac tacagcttcg gcctcttcga ccaggccgaa gcccgcaagg gcggggcgga
     5161 gagttttgac gagtcgctgc gcaagtcggc gcggagggcc aggagccgcg cgggtttcgg
     5221 cgtcatacct gaacagcccg aacagtcgaa gcccgcgcgg cagcccgacc gcgtcaacgt
     5281 catcatcggc gccgccaaca cgatggagag cctgctgcct aagaagcaat agtcacagcc
     5341 gcacaggaga cgctcacatg aagagaaacg cgctgttcag gcgggcggcg ctcgccgccc
     5401 tcgtgcccgt gctgtgcgcc gccgcgcggg cgcaggagag cggggcgccg aaggtcgagg
     5461 tcggggcgca gtattcttcg ctctcgataa cgctgccggg caggttctcg acggggacgg
     5521 acaacgccgc gggggtgggc gcccgcgtca ccttcaacgt gaccaactat ctggcgctcg
     5581 aagccgaggg caacttctac cccacccgca cggtgctcac gttcgcgtcg ggcgggcggg
     5641 cggagcagtt gcaggccggc gtcaaggtcg ggaagcgcat ggagcgctgg gggctcttcg
     5701 ccaaggcgcg gcccggcttc gtaagcttcg acgagacgct caggcccgtc gcggtcgagc
     5761 tcgttgactc gggcggcatg actttcccga ttctcaggtt cgagcgcgag cgcaagacgc
     5821 acttctcggt ggacgtgggc ggcgtgctcg agttctaccc gtctcgcagc atggtcgtcc
     5881 gattcgacgc gggcgacaca ataatccgct acgggcgcca cgacgtgccg ctgcccttca
     5941 tactcgagcc cggcgcgccc ttccagcccg tggggcagga ggaggcgcag gtcaagcaca
     6001 acttccagtt cacggcgggg gtggcctacc gcttcggcgg ggacgacggc gaggagttgg
     6061 aggcgccctc ggagcctggc cgcgaccgag tgcgccgctt cgaggttggc gcgcagttct
     6121 cctccctgct ccttaacctg cccgactccg actccatctt cttcggctcg ttcggccccg
     6181 acacggagcc cgaggtgggc ttcggcggca ggctcacctt taacttgagc gacagcgtcg
     6241 ccgtcgaggc cgaaggcaac ctctacacgc gcgagagttt ccccgccact tcggtcggcg
     6301 gcttcccggc gcagctacag gcgggcgtga aggcgggccg ccgatgggag cgctgggggc
     6361 tcttcgcgaa ggcgcgcccc ggcctcgtct ccttcagccg cgtgcgccag ctagtctcca
     6421 cacagcagtt caccttcgag ggccgcgagt tcacgctcgg gacgttcgag gacaggagga
     6481 agaactactt ctcgatggac gtgggcgccg tcgtagagtt ctaccactcg cgccgcttct
     6541 tctcgcgctt cgacgc
//
LOCUS       DASPKR010000210        16404 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1577951, whole genome shotgun sequence.
ACCESSION   DASPKR010000210 DASPKR010000000
VERSION     DASPKR010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 16404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16404)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16404
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1577951"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..422)
                     /locus_tag="VD968_05730"
     CDS             complement(<1..422)
                     /locus_tag="VD968_05730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002621977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HYE13922.1"
                     /translation="MGFFSYLTGFGGRDMAVDLGTANTLVYVRGRGIVLSEPSVVAID
                     SRTGEVHAVGIEAKRMLGRTPGTISAIRPLKDGVIADFDVTEEMLRHFIQKVHQNRWA
                     HPRVVVCVPSGVTGVEKRAVEEACLSAGARQAYLIEEP"
     gene            complement(510..1097)
                     /locus_tag="VD968_05735"
     CDS             complement(510..1097)
                     /locus_tag="VD968_05735"
                     /inference="COORDINATES: protein motif:HMM:NF014591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase"
                     /protein_id="HYE13923.1"
                     /translation="MRALRAPDAHTPRRAALAAYDEAAVVEAGIPFEVRPADVEEETA
                     GDPAAVAERNARRKATALFSRPPIPGPAELVLGADTVVALDGRIYGKPADAEQARAYL
                     GALNGRTHEVIGAIALARHGEVLVTAVESTRVTFKASDDAALAAYVATGEWEGRAGGY
                     AIQAAGRRLVERIEGDYLNVVGLPLERLKQLLSRR"
     gene            1068..1241
                     /locus_tag="VD968_05740"
     CDS             1068..1241
                     /locus_tag="VD968_05740"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HYE13924.1"
                     /translation="MGVRRAERPHGRFVRSFSLPDTVDRQGVSADYKDGVLLLHLPKR
                     DEQKARRLKIEVK"
     gene            1382..2065
                     /locus_tag="VD968_05745"
     CDS             1382..2065
                     /locus_tag="VD968_05745"
                     /inference="COORDINATES: protein motif:HMM:NF013212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HYE13925.1"
                     /translation="MADKETADKDWPEELGAEQQPPTKIPVNDRRRVRLDAEADASAG
                     GAETEEGAGPSLKPTYVEELEARARAAEQKVSDVQARFEQVRSELRRETDEVRQRLAR
                     TSEERVAREKAAFITALLPVLDNLTRAVEAAEGGGTKESLLDGLRGTISGFEAVLAQG
                     GAEPIEAAGQPFDPELHEAVDTTEVEPERDGAVTAQYSRGYRLGGQLLRPARVQVGRA
                     KSESKGAGE"
     gene            2107..3735
                     /gene="groL"
                     /locus_tag="VD968_05750"
     CDS             2107..3735
                     /gene="groL"
                     /locus_tag="VD968_05750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004211302.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HYE13926.1"
                     /translation="MAAKDLKFREEARSAMLKGVNTLANAVRVTLGPKGRNVVLGKKF
                     GSPVITKDGVTVAKEIELKDKYENMGAQMVREVATKTNDIAGDGTTTATVLAQAIFRD
                     GVKNVTAGANPMQLQRGIQLGVEAAVEELERLSKKIKGKDDLANVAAVSANNDREIGE
                     LISEAMERVGKDGVVTVEESKTLQTELDLVEGMQFDRGYLSPYFVTNADRMEAVLEEP
                     LILIHEKKIAAMRDLLPLLEQVAGQGRQLLIIAEDVEGDALATLVVNRLRGTVKVCAV
                     KAPAFGDRRKAILEDIATLTGGRVITEDLGIKLESVTIEDLGRAKRVIVDKDNTTIVE
                     GAGSRRSIEGRVATIRRQIEEATSDYDREKLQERLAKLAGGVAVIRVGAATETEMKEK
                     KMRVEDAVNATRAAAQEGIVPGGGVALVRAAKALDEVEADGDVRTGVRLLRRAMEEPL
                     RRIAENAGKDGAIVIGKVEESKGAKGYNAATGEFEDLVAAGIIDPTKVVRTALQNAAS
                     IAGLLLTTDAAVTDAPEPKRAAAPPMPGGEDYDF"
     gene            4083..6347
                     /locus_tag="VD968_05755"
     CDS             4083..6347
                     /locus_tag="VD968_05755"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HYE13927.1"
                     /translation="MIDLGTYKDRFAESGQRVLEHAVQESRRRDQNYIAVEHILNGLA
                     VEEADLFNSTMRDLSLDPRSVKVLIEKRLENSRYQNVHKGVRIAPETIELFKKAMERA
                     RAQGRKTIEATDLFMALSQTEDSAMMTVLRNLGANPESVMENVRARVRTREQQEEEYK
                     KKFELPPYLKHFGVSLNRLARADKLPPTIGREQEIQQMIEILCHRERANSPMLVGEPG
                     VGKTAVVEGLARLIELEPEKVPARLRGTHVVQLQMGGLVAGTMLRGMFEERIKGIIDE
                     VKERDNLILFIDEAHTIIGAGAALGTSSDAANMFKTALARGEMRIIGATTITEYKEYI
                     GEDEALARRFRLVKVAEPSIAETREILFGLRPRLERNYSVTISDDAINTALEMAPKYI
                     RNLHLPDKAIGWLDTAAVKVEINEPDTLVVRPEHIIDVISQESRIPRDMIYRDTNDRF
                     SSMDEELGRRVIGQKDAIRAVAQRLRLNKGPLKENHYKPDGVLLFLGPTGVGKTELAK
                     AVAEFMFGDEEKMVRIDMSEYQDGTIGIEKLIGMPRGIVGSERGGVLTEQLRENPYTV
                     LLLDEVEKASPTLMNLFLQAFDEGWLTDGRGKKVYLSDAIVIMTSNLGSENFKKYEKP
                     FGFGTKTLGDVKAIKGDVLKAAEQRFSPEFRNRIDEIVVFSPLTMDEVREIAKLYVGK
                     LCRQMEHQGKDCHVTQAALDLLTEKGYSPAYGARFLKRHIDEKVKLPITAMWKEGERF
                     TADVEDGEVVVRAF"
     gene            6491..7324
                     /locus_tag="VD968_05760"
     CDS             6491..7324
                     /locus_tag="VD968_05760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13928.1"
                     /translation="MRNTLFKIFALGAALAAAPLVLLSAPALAGQQKAAAPAAKVDEK
                     AEAIIKRAIDAVGGPAYLGARTQVSRGFYTPFRDGAQGLPIRFDDYIVFPDRERTEFR
                     GSGVRNVQTNTGETGWLFEGQSRKLTDVTPEQAENFRVSLRTSIDNALRGWWRAEGAS
                     LAYVGRREAGLAKRNEVVKISYPDGFEVEFEFDAKDALPNKARFKRKNKEGEMVEEEF
                     RFAQYLPAGAARLPFVVDHYEAGAQTSRVNYEAIDLNREVPASFFEKPTDIKAFLKSL
                     K"
     gene            complement(7317..7610)
                     /locus_tag="VD968_05765"
     CDS             complement(7317..7610)
                     /locus_tag="VD968_05765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13929.1"
                     /translation="MRPYDFSVCCRRLVEAFRAAPDAQLDSTFFLGFGEDGAPIYKLG
                     SLQAGSLSTTFTEPLVFCPFCGSRVAAGAGAPALEQTVGMGEELTVLAGGRIT"
     gene            complement(7630..7923)
                     /locus_tag="VD968_05770"
     CDS             complement(7630..7923)
                     /locus_tag="VD968_05770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13930.1"
                     /translation="MGEGKMQLVYATGQRERDFRIAEGRESVPTGARVYATCTADATV
                     EDIGEVTFQTMTDEEFYELRAQAREARERARAVRAAAEGGGAFVGLLGKILGR"
     gene            complement(8046..8741)
                     /locus_tag="VD968_05775"
     CDS             complement(8046..8741)
                     /locus_tag="VD968_05775"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYE13931.1"
                     /translation="MQSQALAEGVMREQSQAGASVVKVAIIEDLREIREGLATLIDLT
                     EGFSCTGRYGSVEEALPAIARDLPDLVLTDIGLPGMSGIEGTRVLKERHPGLTVLILS
                     VYDDDERVFDALCAGATGYLLKKTPPAKLVESLREAVGGGAPMSPEVARRVIALFRDF
                     RPPRRADYDLTPHETRLLRLLVEGHNYKTAAFELNVSVNTVSFHLKKIYEKLQVHSKS
                     EAVAKALRDGLVK"
     gene            complement(8824..12084)
                     /locus_tag="VD968_05780"
     CDS             complement(8824..12084)
                     /locus_tag="VD968_05780"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HYE13932.1"
                     /translation="MPTQLQSPDALAKRAALVALLMICLRAGALAERLPVRAYTIAEG
                     LAHDQVERIVQDSRGFLWFCTTDGLSRFDGYRFTNYGVRDGLPSARVSDLLESRRDGT
                     YWVATSGGVAHFDPAANARLVAEARADGRAGDEVRAVFRSYQVGDEPQSNIVQTLYED
                     AAGNVWAGTQGGLFRLEGGRAASRFERVPLGIPSRAEPAVEVGCVVEGVEGSLWVGTN
                     RGVVRRLPDGRTSHQPVFTTQGTDYVWDLLVDGAGRVWVAHQAGLLVVKPAAASNIGP
                     MLWRIAVGEPNVDEGGRLRLPEAPGEARWYTTADGLAHNNVHALALFSDGRLWLGTRG
                     GGVSVFEGGRLRNYSAGHGLSARVNALAEDRDGNVWVGTYTDGALKVARGGLASYAEA
                     EGLGSADIVSVFDCPEAGLCVVSSRWALSWLDGERFNSVRLNLPRRIIESSSGRWNII
                     RDGGGEWWAATGEGLYRFPRVSRLEELATAEPVAVYTTRDGLADNNISRLFEDARGDV
                     WVGSYNPPVTLTRWERATNSFRRYTEADGVPAFNWANVFAEGPPGSLWVGLHNGGLAR
                     LRGGRFETLAGGGAATERALGGLSQGLYFDRRGRLWVASSQGGLRIDDPAAESPRMEP
                     AAAPGQQLSSENLRCFAEDGFGRLYVGTARGVDRLDPSTGRVKHFTTADGLIKSEVMV
                     AHAGADGALWFGTREGLSRLLPAPDEPHPPPSVLISGLRVGGVAQPVSELGEQDVPEL
                     TLPTGRGQIQVDFFGLSFSAGEELRYQYLIEGAGRDWSEPTEQRTVTASLAPGSYRLL
                     VRAVSSDGAVSARPASVSLRLPPPVWRRWWFVALAALAAGAAIYAADRYRVRRLLELE
                     RVRTRIATDLHDDIGASLSQIAILSEVVSRRVGGDGDSVVREPLATIAGTSREMVDSM
                     SDIVWAINPKRDRLGDLAQRMRLFASDLLSARDIRLKFRAPDAARDVTVGADLRREVY
                     LIFKETVNNLAKHSGCDEAEIDFRLVGNRLRVTVYDNGRGFDARPPAEGNGGGGAPAA
                     TMGGHGLDSMRRRAERLGGSYEVASGPGRGTTVTLSVPVKVKRRRRLPSLRKLLRR"
     gene            complement(12249..13427)
                     /locus_tag="VD968_05785"
     CDS             complement(12249..13427)
                     /locus_tag="VD968_05785"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE13933.1"
                     /translation="MRIAILGTRGVPASYGGFETFAEQLSTRLVARGHDVTVYCRAHY
                     VSPRQIEYKGVRLKVLPTIRHKYFDTVVHTFLSSAFAAFGRYDAALICNAANAPFAPV
                     LRAAGTPVAINVDGLEHKRRKWNWLGKNYYRVAERLSVWLPNETVTDARVIQDYYLTK
                     YGAPSTMIAYGADVERRLDRAAVRTWGVEPNRYVLYVSRLEPENNAEMVVEAFRRVRT
                     PHKLLVVGDAPYAHEYISRLRSLARRDRRIIFTGFVFGDAYRALQQNAYCYVHATEVG
                     GTHPALLEAMGYGNCVLTLATPENVEAVGDAGLHYSDMKDLAAKLQRVLRDGAIVSQY
                     RQRAQARVRERYDWEHVVDQYESLFARMAGRPAPERLAATPPAPATERAAEEAAARKS
                     "
     gene            complement(13493..14617)
                     /locus_tag="VD968_05790"
     CDS             complement(13493..14617)
                     /locus_tag="VD968_05790"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HYE13934.1"
                     /translation="MHIAIDAHSVGTGLAGNETYAANLVEALAALDPGNRYTVYVTRQ
                     AAVERFAGRWPHVSVRRTLPHTPLVRVPFTLSAELRRRPVDLLHVQYTAPPLAPCPVV
                     VTVHDISFEHLPQTFKRRSWMQLRLTVRRTVRRAAHVIVPSEYTRLDLLKSYGLDPSR
                     VSVVPLAAAGRFRPVEDASELERVRRRYGIGGEYVLAVGSIQPRKNLARLLRAYAGLR
                     RERGRSNLPQLVIAGKPAWLYGETLRAVEAEGLRDSTVLTGYVSEDDLPALYTGALCF
                     VYPSYFEGFGLPPLEAMSCGAPVVTGNLTSLPEVVGDAALTVDPLDPDAIAAAVARLI
                     DDPALREDLRRRGLSRSRQFDWRGTARMTLQIYRRVMGDE"
     gene            14772..15248
                     /locus_tag="VD968_05795"
     CDS             14772..15248
                     /locus_tag="VD968_05795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13935.1"
                     /translation="MNLCVVKRVALSLMLSACAALAAPAGGGARTKAAAAAPPPNPIL
                     VFLGQEVYETGGKQWLRYRYSVMNLSEYPNEMFAAAPELPPCGQNTSASRTWVDFYDQ
                     SGKRLYGFCALGSRDNLSQIWFALELDVLPPSWVYVELNDRKTNTKYKSNLAETTL"
     gene            complement(15249..15935)
                     /locus_tag="VD968_05800"
     CDS             complement(15249..15935)
                     /locus_tag="VD968_05800"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: protein motif:HMM:NF000594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HYE13936.1"
                     /translation="MKRRESSVGLLFEEEARARGHRMVAGLDEVGRGALAGPVVAAAV
                     ILDPAASLPEGLDDSKRLTALQRERIAGELRRTAVCHAYGVVGPEEIDATNILVATRR
                     AMMKALEGLTTCADFLLIDALQLRESPLPQKAIIRGDSISASIAAASVLAKTYRDRLM
                     RRYHEEFPHYGFARHVGYGTREHWAALREHGCCPIHRKSFRGVLPGEAGAGEGDDAAG
                     DEVAQGEEPG"
     gene            complement(16036..16371)
                     /gene="rplS"
                     /locus_tag="VD968_05805"
                     /pseudo
     CDS             complement(16036..16371)
                     /gene="rplS"
                     /locus_tag="VD968_05805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005590628.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
BASE COUNT         2768 a         5523 c         5680 g         2433 t
ORIGIN      
        1 atcggctcct cgatgaggta ggcctggcgg gcaccggcgc tcaggcaggc ctcctcgacc
       61 gcccgcttct cgacccccgt cacgcccgag gggacgcaga ccaccacgcg ggggtgcgcc
      121 cagcggttct ggtgcacctt ctggatgaag tggcgcagca tctcctcggt gacgtcgaag
      181 tcggcgatga cgccgtcctt cagcggccgg atcgcggaga tcgtgccggg cgtgcggccg
      241 agcatgcgct tggcctcgat accgacggca tggacctcgc cggtgcgcga gtcgatcgcc
      301 accaccgacg gctccgacag gacgatgccg cggccgcgga cgtagaccag ggtgttggcg
      361 gtcccgaggt ccacggccat gtcacggcca ccgaagccgg tgaggtacga gaagaagccc
      421 atgcggagga gcgagcgggc gcaggtggtg gagccgagcc gcgccgggcg gccagtgtat
      481 cgaagggtcc ggccactgaa atggggcgct cagcgcctcg agagcagctg tttcaggcgc
      541 tccagcggga gcccgacgac gttcaggtag tcgccctcga tccgctccac gagccgcctt
      601 cccgcggcct ggatggcgta gccgccggcg cgtccctccc actcgccggt ggcgacgtac
      661 gcggccagcg cggcgtcgtc ggaggccttg aacgtcaccc gcgtactctc cacggcggtg
      721 acgaggacct cgccgtggcg agcgagcgcg atcgcgccga tcacctcgtg ggtgcggccg
      781 ttgagggcgc cgaggtaggc gcgcgcctgc tcggcgtcgg ccggcttgcc gtagatcctg
      841 ccgtcgagcg cgacgacggt gtcggcgccg agcaccagct cggcgggtcc ggggatgggt
      901 gggcgcgaga agagcgccgt cgccttgcgc cgggcgttgc gctccgccac ggctgcgggg
      961 tcgcccgcgg tctcctcctc cacgtcggcc ggacggacct cgaacgggat gccggcctcg
     1021 acgacggccg cctcgtcata cgcggcgagc gccgccctgc ggggggtgtg ggcgtccggc
     1081 gcgcggagcg cccgcacggc cgcttcgtgc gctccttcag cctgcccgac acggttgacc
     1141 gccaaggcgt ctcggccgac tacaaggacg gagtgctcct gctacacctt cccaagcgcg
     1201 acgagcagaa ggcccgccgc ctcaagatcg aggtcaaatg aaggggcggg ccgcgtgccg
     1261 cgtttgagag tttgcgagcg cggggtgtaa gctctccctt aagagataga gcaaccactc
     1321 cacccgcggt tcacggttaa cgcttatgtt gtctttccga agggggaaga agaagcaagg
     1381 tatggcagac aaggagacgg ccgacaagga ttggccggag gagctgggcg cagagcagca
     1441 gccgcccacg aagattcccg tcaacgaccg caggcgcgtc aggctcgacg ccgaagccga
     1501 cgcttcggct ggcggcgccg aaacggaaga gggcgcgggg ccgagcctga agccgactta
     1561 cgtcgaagag cttgaggcgc gggcgcgcgc cgccgagcag aaggtctcgg acgtgcaggc
     1621 gcgcttcgag caggtgcgct cggagcttcg gcgcgagacg gacgaggtca ggcagcggct
     1681 cgcgcgcacc tccgaagagc gcgtcgcgcg cgagaaggcg gccttcataa cggcgctgct
     1741 gcccgtgctc gacaacctca cgcgcgcagt cgaggccgcg gagggcggcg gcacgaagga
     1801 gtctcttctc gacggcctgc gcggcaccat cagcggcttc gaggccgtgc tcgcgcaggg
     1861 cggcgccgag cccatcgaag ccgccgggca gcccttcgac cccgagcttc acgaggccgt
     1921 ggacacgacg gaagtcgagc ccgagcgcga cggcgcggtg acggcgcagt acagccgcgg
     1981 ctaccgcctc ggcggccagc tccttcgccc cgcgcgcgtc caggtcggcc gcgcaaagag
     2041 cgagagcaag ggcgcgggcg agtaaaaagt ttttcgtaat cattcacgac agacgaggag
     2101 ataaaagtgg cagccaagga tttgaagttc agggaagagg cgcgttcggc gatgctcaag
     2161 ggcgtgaaca ctctggcgaa cgccgtgcgc gtcacgctcg gccccaaagg caggaacgtc
     2221 gtgctcggca agaagttcgg ctcgcccgtc atcaccaaag acggcgtgac ggtcgccaaa
     2281 gagatagagc ttaaagacaa gtacgagaac atgggcgcgc agatggtgcg cgaggtggcg
     2341 acgaagacga acgacatcgc gggcgacggc accaccacgg ccactgtgct cgcgcaggcc
     2401 atcttccgcg acggcgtcaa gaacgtgacg gccggcgcca accccatgca gctacagcgc
     2461 ggcatacagc tcggcgtcga ggcggcggtc gaggagctgg agcgactgtc gaagaagatc
     2521 aagggcaagg acgacctcgc caacgtcgcc gccgtctctg ccaacaacga ccgcgagata
     2581 ggcgagctca tatccgaggc gatggagcgc gtaggcaagg acggcgtcgt caccgtcgag
     2641 gagtcgaaga ccttgcagac cgagctcgac ctcgtagagg gcatgcagtt cgaccgcggg
     2701 tatctgagcc cctacttcgt caccaacgcc gaccgcatgg aggccgtgct cgaagagccg
     2761 ctcatcctca tccacgagaa gaagatcgcc gccatgcgcg accttctgcc gctgctcgag
     2821 caggtggcgg ggcagggccg acagctcctc atcatcgccg aggacgtcga gggcgacgcg
     2881 ctcgccactc tggtcgtcaa ccgcctgcgc gggaccgtga aggtctgcgc cgtcaaggcc
     2941 cccgccttcg gcgaccgccg caaggccata ctcgaagaca tcgccacgct cacgggcggg
     3001 cgcgtcatca ccgaagacct cggcatcaag ctcgagtcgg tgacgataga agacctcggc
     3061 cgcgccaagc gcgtcatcgt tgacaaggac aacacgacca tcgtcgaggg cgccggcagc
     3121 cgccgcagca tagaggggcg cgtcgcgacc atacgccgcc agatagagga ggccacctcg
     3181 gactacgacc gcgagaagtt gcaggagcgc ctcgccaagc tcgcgggcgg cgtcgccgtc
     3241 atacgcgtcg gcgcggccac ggagaccgag atgaaggaga agaagatgcg cgtcgaggac
     3301 gccgtcaacg ccacgcgcgc cgccgcgcag gagggcatcg tccccggcgg cggggtcgcg
     3361 ctcgtgcgcg ccgcgaaggc tctggacgag gtggaggccg acggcgacgt gcgcacgggc
     3421 gtgcggcttt tgcggcgcgc gatggaggag ccgcttcgcc gcatagcgga gaacgccggc
     3481 aaggacggcg ccatcgtcat cggcaaggtc gaggagtcga agggcgcgaa ggggtacaac
     3541 gccgccaccg gcgagttcga agacctcgtc gccgcgggca taattgaccc gacgaaggtc
     3601 gtccgcacgg cgttgcaaaa cgctgcatcc atagcggggc tgctgctaac aactgatgca
     3661 gccgtcacgg acgcgcccga gccgaagagg gccgcggcgc cgcccatgcc cggcggggaa
     3721 gactacgact tctaaaaaaa gaggctcggg acttgggggc cggagactcg cgggggaatt
     3781 ttttacaaac cccgagcctc cggcccctta gtctctccgg tggctctaaa attgcagcgc
     3841 gccggatgtg ttatagttca gtgtgccctg aagcgcgacg agcgctcctc gctacggcgt
     3901 accgggctag cgcgcaaggc atctaaacgg aggccctacg gcgggcaagt atggcgaaat
     3961 tgtttcgccg ccgagccgag gaagttgaac gcccgccgcg tgagtgttaa gaggctgaag
     4021 ttgacgagcc gggcggcccg ccaattcgga cgggccgccc ggcggtgcta aggaaaaccg
     4081 taatgataga tctcggaact tacaaagacc gtttcgcgga gagcggccag cgcgtgctcg
     4141 agcacgcagt gcaggagtcg cgccgccgcg accagaatta catagcagtc gagcacatcc
     4201 tgaacggcct cgccgtcgag gaggccgacc ttttcaactc gacgatgcgc gacctctcgc
     4261 tcgacccgcg ctcggtcaaa gtcctgatcg agaagcggct cgagaactcg cgctaccaga
     4321 acgtgcacaa gggcgtgcgc atcgcgcccg agaccataga gctcttcaag aaggctatgg
     4381 agcgcgcccg cgcgcagggg cgcaagacca tcgaggccac agacctcttc atggcgctct
     4441 cgcagaccga ggacagcgcg atgatgacgg tgctccgcaa cctcggcgcc aaccccgagt
     4501 ccgtcatgga gaacgtccgg gcgcgcgtcc gcacgcgcga gcagcaggag gaggagtaca
     4561 agaagaagtt cgagctcccg ccctacctca agcacttcgg cgtgtcgctc aaccgcctcg
     4621 cccgcgccga caagctgccg cccaccatcg gccgcgagca ggaaatccag cagatgatag
     4681 aaatcctctg ccaccgcgag cgcgccaact cgcccatgct cgtcggcgag ccgggggtgg
     4741 gcaagaccgc cgtggtcgag gggctggccc ggctcatcga gctcgagccc gagaaggttc
     4801 cggcgcggct gcgcggcacg cacgtcgttc agttgcagat gggcgggctc gtggccggca
     4861 cgatgctgcg cggcatgttt gaggagcgca tcaagggcat cattgacgag gtgaaggagc
     4921 gcgacaacct gatcctcttc attgacgagg cgcacacgat catcggcgcc ggcgccgcgc
     4981 tcggcaccag ctccgacgcc gccaacatgt tcaagaccgc cctcgcccgc ggcgagatgc
     5041 gcatcatcgg cgcgacgacc atcaccgagt acaaggagta catcggcgag gacgaggccc
     5101 tcgcccgccg cttccgtctc gtcaaagtcg ccgagccttc gattgccgag acgcgcgaaa
     5161 tcctgttcgg cctccgcccg aggctcgagc gcaactactc cgtcaccatc tccgacgacg
     5221 ccatcaacac cgctcttgag atggcgccga agtacatccg aaacctccac ctgcccgaca
     5281 aggccatcgg ctggctcgac accgccgcgg tcaaggtcga gataaacgag cccgacacgc
     5341 tcgtggtgcg ccccgagcac atcattgacg ttatctcgca ggagtcgcgc atcccgcgcg
     5401 acatgatcta ccgcgacacg aacgaccgct tctcctcgat ggatgaggag ttgggccgcc
     5461 gcgtcatcgg gcagaaggac gccatacgcg ccgtcgcgca gcgcctgcgc ctgaacaagg
     5521 ggccgctcaa ggagaaccac tacaagccgg acggcgtgct cctcttcctc gggccgacgg
     5581 gcgtcggcaa gaccgagctc gcgaaggccg tcgccgagtt catgttcggc gacgaggaga
     5641 agatggtgcg cattgacatg tcggagtacc aggacggcac catcggcatc gagaagctga
     5701 taggcatgcc gcgcggcata gtcggctccg agcgcggcgg cgtcctgacc gagcagctac
     5761 gcgagaaccc gtacacggtg ctcctcctcg acgaggtcga gaaggcgagc ccgactctga
     5821 tgaacctctt cctgcaagcc ttcgacgagg ggtggctcac ggacgggcgc gggaagaagg
     5881 tctatctctc ggacgcaatc gtgatcatga cctcgaacct cggctccgag aacttcaaga
     5941 agtacgagaa gcccttcggc ttcggcacga agacgctcgg agacgtgaag gccatcaagg
     6001 gcgacgtgct gaaggcggcc gagcagcgct tctcgcccga gttccgcaac cgcatcgacg
     6061 agatagtcgt cttctcgccc ctgacgatgg atgaggtgcg cgagatagcc aagctctacg
     6121 tcggcaagct ctgccgccag atggagcacc agggcaagga ctgccacgta acgcaggccg
     6181 cgctcgacct gctcaccgag aagggctaca gcccggccta cggcgcgcgc ttcctcaagc
     6241 gccacattga cgagaaggtg aagctgccta tcacggcgat gtggaaggag ggagagcgct
     6301 tcacggccga cgtggaggac ggcgaggtcg tcgtccgagc cttctgaaaa agctgggcgg
     6361 acaaccccgg ggccggctag acggcatcaa aagtagcgtg agggcttcag cgagattttg
     6421 ttgaagccct cacgctttgt gcgcccggcc cgtttgcgtc tccggccccc gtttctatat
     6481 aaattccgct atgagaaata cgctgttcaa gattttcgcg ctcggcgccg cgctcgccgc
     6541 ggcgccgctc gtgcttctgt cagcgcccgc gctcgccggt cagcaaaagg ccgcggcccc
     6601 ggccgcgaag gttgacgaga aggccgaagc catcatcaag cgcgcgattg acgcagtggg
     6661 cggccccgcg tacctggggg cgcgcacgca ggtctctcgc ggcttctaca cgcccttccg
     6721 cgacggcgcg caggggctcc ccatacgctt cgacgactac atcgtcttcc ccgaccgcga
     6781 acgcacggag ttcaggggct cgggcgtccg caacgtgcag acgaacacgg gcgagacggg
     6841 ctggctcttc gaggggcagt cccggaagct cacggacgtg acgcccgaac aggcggagaa
     6901 cttccgcgtc tccctgcgga cgagcataga caacgcgctg cgcggctggt ggcgcgccga
     6961 gggcgcctcg ctcgcctacg tggggcggcg agaggcgggg ctggctaagc gcaacgaggt
     7021 ggtgaaaatc tcctacccgg acggcttcga ggtcgagttc gagttcgacg ccaaagacgc
     7081 cctgcccaac aaggctcgct tcaagaggaa gaacaaggag ggcgagatgg tagaggagga
     7141 gttccgcttc gcgcagtacc tgccggctgg cgccgcgcgc ctgcccttcg tcgtggatca
     7201 ctacgaggcc ggcgcgcaga cgagccgcgt gaactacgag gcgatagacc tgaaccgcga
     7261 agtccccgcc tcgttcttcg agaagccgac cgacatcaag gcgttcctca agtcgctcaa
     7321 gtgattcggc cgcccgccag aacggttaac tcttcgccca tgccgaccgt ctgttcgagc
     7381 gcgggcgccc cggcgccggc cgcgacgcga ctcccgcaga aggggcagaa gacgagcggc
     7441 tcggtgaacg ttgtggagag gctgccggcc tgaaggctgc cgagtttgta gatgggcgcg
     7501 ccgtcctcgc cgaagccgag gaagaaggtc gagtcgagct gcgcgtcggg cgcggcgcgg
     7561 aaggcttcga ccagtcggcg gcagcagacg gagaagtcgt aaggccgcat taccgttccc
     7621 tccccgcctt cagcgcccga gaatcttccc caggagcccg acgaaagccc cgccgccttc
     7681 ggcggccgcg cgcacggccc gcgctcgctc gcgcgcctcg cgcgcctgcg cccttagctc
     7741 gtagaactcc tcgtccgtca tcgtctggaa agtgacctcg cctatgtcct ccacggtcgc
     7801 atcggccgtg caggtcgcgt acacgcgagc gccggtcggc accgactcgc gcccctcggc
     7861 tatgcggaag tccctctccc tctgccccgt cgcgtaaact agctgcattt tcccttcccc
     7921 caaaacttcg attttcctga tgtcgaggcc cgtcaatctg taacgcggaa atattaccgg
     7981 atcggcatca cacggccgct acctatgtag gtagcggcgt ggggcggcga ggccgggttg
     8041 cgcttttact tgacgagccc gtcgcgcagg gcctttgcga cggcctcgga cttggagtga
     8101 acctgtagct tctcgtaaat cttcttgagg tggaaggaga ccgtgttgac cgagacgtta
     8161 agctcgaagg cagccgtctt gtagttgtgg ccctcgacga ggagcctgag cagccgggtc
     8221 tcgtgcgggg tgaggtcgta gtcggcgcgg cgcggcgggc ggaagtcgcg gaagagcgcg
     8281 atgacgcggc gcgcgacctc gggcgacatg ggcgccccgc cgccgacggc ctcgcgcagg
     8341 ctctcgacga gcttggcggg cggcgtcttc ttcagaaggt agccggtcgc gccggcgcag
     8401 agggcgtcga agacgcgctc gtcgtcgtca tagacggaga gaatgagcac ggttagcccc
     8461 gggtggcgct ccttgagcac gcgcgtcccc tctatgccgc tcatgccggg caggccgatg
     8521 tccgtgagca caaggtcggg caggtcgcgc gcgattgccg gcagcgcctc ctccaccgag
     8581 ccgtagcggc ccgtgcaact aaagccctcg gtcaggtcaa tcagggtcgc gagcccctcg
     8641 cgtatctcac gcaggtcttc gatgatggcg accttgacga cgcttgcgcc cgcctgcgac
     8701 tgttctctca tcacgccctc ggccagagcc tgtgactgca tcactttctt tgcccccttt
     8761 cggcgcgcgt ctgcggacgg cgcggggggc agaataacgg gcggcgcgcg ccgccgtcac
     8821 cacctacctg cgtagcaact ttctgagcga gggcagccgg cgccgacgct ttaccttgac
     8881 ggggacgctg agcgtgacgg tcgtgccgcg gcccggcccg ctggcgacct cgtaggagcc
     8941 gccgagcctc tcggcgcggc gccgcatgct gtcgagcccg tggccgccca tcgtcgccgc
     9001 gggcgcgccg ccgccgccgt tcccttccgc cggggggcgg gcgtcgaagc cgcggccgtt
     9061 gtcatagacc gtcacgcgca ggcggttgcc gacgagccgg aagtcaatct cggcctcgtc
     9121 gcagcccgag tgcttcgcga ggttgttgac cgtctccttg aatatcagat agacctcgcg
     9181 ccgcagatcc gcgccgacgg tcacgtcgcg cgcggcgtcg ggcgcgcgga acttaagtct
     9241 tatgtcgcgc gcgctcagga ggtcgctggc gaatagccgc atgcgctgcg cgaggtcgcc
     9301 gaggcggtcg cgcttcgggt tgatggccca gacgatgtcg ctcatcgagt caaccatctc
     9361 gcgcgacgtt cccgcgatgg tcgccagagg ctcgcgcacg accgagtcgc cgtcgccgcc
     9421 gacgcggcgg ctcacgacct cgctaagtat cgctatctgc gagaggctcg cgccgatgtc
     9481 gtcgtgcagg tcggtggcga tgcgcgtgcg cacgcgctcc aattccagca ggcggcgcac
     9541 gcggtagcgg tcggccgcgt agatggcggc gccggcggcg agcgcggcga gcgcgacgaa
     9601 ccaccagcgg cgccagacgg gcggcggcag ccggagggag accgaagcgg gccgcgcgct
     9661 cacggcgccg tcggagctta cggcgcgcac cagcaggcgg tagctgcccg gcgcgaggct
     9721 ggccgtgacg gtgcgctgct ccgtaggctc gctccagtct cggcccgcgc cctcgatcag
     9781 gtactggtag cgaagctcct cgccggccga gaagctcagc ccgaagaagt caacctgaat
     9841 ctgcccccgc cccgtcggga gcgtgagttc cggcacgtcc tgctcgccaa gctccgagac
     9901 gggctgcgcc accccgccga cgcggaggcc gctgatgagg acggagggcg gcgggtgcgg
     9961 ctcgtcgggc gctggcagga ggcgcgacag gccctcgcgc gtcccgaacc agagcgcccc
    10021 gtcggcgccc gcgtgcgcga ccatgacctc gctcttgatg aggccgtcgg ccgtggtgaa
    10081 gtgcttgacg cggcccgtcg aggggtcgag gcggtcaacg ccgcgcgccg tgccgacgta
    10141 taaccggccg aacccgtctt ccgcgaagca gcggaggttc tcgctcgaaa gctgctgccc
    10201 cggcgccgcg gcgggctcca tgcgcggcga ctcggccgcg gggtcgtcaa tgcgcaggcc
    10261 gccctggctc gaagcgaccc agagcctccc ccttcggtcg aagtaaaggc cctgacttaa
    10321 gccgccgagg gcgcgctccg tggcggcgcc gccgcccgcg agagtctcga agcggccgcc
    10381 gcgcagccgc gcgagcccgc cgttgtgcag gcccacccag agggagcccg gcggcccctc
    10441 ggcgaagacg ttcgcccagt tgaaggcagg gacgccgtcc gcttccgtgt agcgtcggaa
    10501 gctgttcgtc gcgcgctccc agcgcgtgag agtgacgggc gggttgtagg agcctaccca
    10561 cacgtcgccg cgcgcgtcct cgaacagccg cgagatgttg ttgtcggcga ggccgtcgcg
    10621 cgtcgtatag acggcaacgg gctctgcggt cgcaagctct tcgagacgcg agacgcgcgg
    10681 gaagcggtag agcccctcgc ccgtcgccgc ccaccactcg ccgccgccgt cgcggattat
    10741 gttccagcgg ccggagctcg actcgattat ccgccgcggc aggttcaggc ggacggagtt
    10801 gaagcgctcg ccgtcgagcc aactcagagc ccagcgggag cttacgacgc acaggcccgc
    10861 ctcggggcag tcgaagacgg atacgatgtc ggcgctgccc agaccttcgg cctcggcgta
    10921 tgaggcgagc ccgccgcgcg cgaccttcag cgcgccgtca gtgtaggttc ctacccagac
    10981 attgccgtcg cggtcttcgg ccagtgcgtt gacgcgcgcg ctcaggccgt gcccggcgga
    11041 gtagttgcgc aggcgcccgc cctcgaagac cgagacgccg ccgccgcgcg tgccgagcca
    11101 gaggcgcccg tcggagaaga gcgcgagcgc gtggacgttg ttgtgcgcga gcccgtccgc
    11161 ggtcgtgtac cagcgcgcct cgccgggcgc ctccggcagt cgcagccgcc ctccctcgtc
    11221 aacgttcggc tcgccgaccg cgattcgcca gagcatcggc ccgatgttag acgccgcggc
    11281 cggcttgacg acgagcaggc ctgcctgatg ggcgacccac acgcgccccg cgccgtcaac
    11341 gagcaagtcc cagacgtagt cagtcccctg cgtagtgaac acgggctggt gcgaggtgcg
    11401 cccgtccggc aggcggcgaa cgacgccgcg gttagtcccg acccagagcg acccctccac
    11461 gccctcgacg acgcagccga cctcgacggc cggctcggcc cgcgagggta tgccgagcgg
    11521 gacgcgctcg aagcggctgg cggccctccc gccttcgagc cggaacagcc cgccctgcgt
    11581 cccggcccag acgttgccgg ccgcgtcctc gtagagcgtc tgcacgatgt tcgactgcgg
    11641 ctcgtcgccg acctgataag acctgaagac ggcgcgcact tcgtcgccgg cacgcccgtc
    11701 ggcgcgcgcc tccgccacga ggcgcgcgtt ggccgccggg tcgaagtggg caacgccgcc
    11761 gctcgtagcg acccagtagg tgccgtcacg gcggctttcg agcaggtcac tcacgcgcgc
    11821 cgacggcagc ccgtcgcgca cgccgtagtt ggtgaagcgg tagccgtcga agcgcgacag
    11881 gccgtccgtc gtgcagaacc aaaggaaccc gcgcgagtcc tgaacgatgc gctcgacctg
    11941 gtcgtgcgcc agcccctcgg cgatggtgta ggccctcacg ggcagccgct ccgcgagcgc
    12001 gcccgcgcgc aggcagatca tgaggagcgc gaccagcgcc gcgcgcttcg ccagtgcgtc
    12061 cgggctttgg agttgtgtcg gcacgactac gacgggcgaa aggaattagc gggcagcttt
    12121 acgacttccg ggacgggcgg gagttttgca caggtgggcg ccggagggga agggcgggcc
    12181 gcccgagatt taacacagcg agcgcagaga aggatttgaa atctgcaatt ccagatttga
    12241 aatttgtctc agctcttgcg cgcggcggcc tcttcggcgg cgcgctcggt ggctggggcg
    12301 gggggcgtcg ccgcgaggcg ctcgggcgcg ggcctacctg ccatgcgcgc gaagaggctc
    12361 tcgtactggt caacgacgtg ctcccagtcg tagcgctcgc gcacgcgggc ctgcgcgcgc
    12421 tggcggtact gactgacgat tgcgccgtcg cgcagcacgc gctgtagctt cgcggccagg
    12481 tccttcatgt ccgagtagtg cagcccggcg tcgcccacgg cctcgacgtt ctcgggcgtg
    12541 gcgagcgtca gcacgcagtt gccgtagccc atcgcctcta gcagagccgg gtgcgtgccg
    12601 ccgacctcgg tggcgtggac gtagcagtag gcgttctgct gaagggcgcg gtaggcgtcg
    12661 ccgaagacga agcccgtgaa gatgatgcgg cggtcgcggc gcgcgagcga gcgcaggcgg
    12721 cttatgtact cgtgcgcgta gggcgcgtcg ccgacgacca gcagcttgtg cggcgtgcgc
    12781 acccgccgga acgcctcgac caccatctcg gcgttgttct ccggctccag gcgcgagacg
    12841 tagagcacgt agcggttggg ctcgacgccc cacgtgcgca cggccgcgcg gtcgagacgg
    12901 cgctcaacgt ccgcgccgta ggcgatcatc gtcgagggcg cgccgtactt cgtgaggtag
    12961 tagtcctgta tgacgcgcgc gtccgtcacc gtctcgttcg ggagccacac ggagagccgc
    13021 tcggccacgc ggtagtagtt cttccccagc cagttccact tgcgccgctt gtgctctagg
    13081 ccgtcaacgt ttatcgcgac gggcgtgcct gccgcgcgca agacgggcgc gaagggggcg
    13141 ttggcggcgt tgcagattag cgcggcgtcg tagcggccga aggcggcgaa ggccgaggag
    13201 aggaaggtgt ggacaacggt gtcgaagtac ttgtggcgta tggtgggcag gactttcagg
    13261 cgcacgccct tgtactcgat ctggcggggc gagacgtagt gcgcgcggca atagaccgtc
    13321 acgtcatggc cgcgcgcgac gagccgcgtc gagagctgct cggcgaaggt ctcgaacccg
    13381 ccgtagctcg ccgggactcc ccgcgtcccc aggatagcta tgcgcatcaa gctcagtgat
    13441 gagtggtggg tggtgattga cggaagaaga ccggcttcct actcgtcact cgtcactcat
    13501 cccccatcac cctcctgtag atctgcaaag tcatgcgggc cgttccccgc cagtcgaact
    13561 gccgcgagcg gctaaggccg cggcggcgca aatcttctct gagcgccggg tcgtctatga
    13621 ggcgggcgac ggcggcggct atggcgtcgg ggtcgagcgg gtcaaccgtc agcgcggcgt
    13681 cgcccacgac ctcgggcagg ctcgtgaggt tgccggtgac gacgggcgcg ccgcagctca
    13741 tggcttccag cgggggcagg ccgaacccct cgaagtagga ggggtaaacg aagcagagcg
    13801 cccccgtgta cagtgcgggc aagtcgtcct ctgatacgta gccggtcagc accgtcgagt
    13861 cgcgcaggcc ctcggcctcg acggccctca aggtctctcc gtagagccat gcgggcttgc
    13921 cggctatcac cagttgcggc agattactcc tcccccgctc gcggcgcaag cccgcgtacg
    13981 cgcgaagcag ccgcgccagg ttcttgcgcg gctgaatgga gccgaccgcc agcacgtact
    14041 cgccgccgat gccgtagcgg cgccgcacgc gctcgagctc cgaggcgtcc tcgacgggcc
    14101 ggaagcgccc ggcggcggcg agcggcacga ccgagacgcg cgagggatcg agcccgtagg
    14161 acttcagcag gtcgagccgc gtgtactccg aaggcactat gacgtgcgcc gcgcgcctga
    14221 ccgtgcgcct gaccgtcagg cggagctgca tccagctacg gcgcttgaag gtctgcggca
    14281 aatgctcgaa ggagatgtcg tggactgtga cgacgacggg gcagggggcg agcggcggcg
    14341 ccgtgtactg cacgtgcagc agatcaacgg ggcgccggcg cagctcggcc gagagcgtga
    14401 aggggacgcg cacgagcggc gtgtgcggta gagtcctgcg gaccgagacg tgcggccacc
    14461 gcccggcgaa gcgctcgacc gccgcctgcc gcgtgacata gacggtgtag cggttccccg
    14521 ggtcgagggc ggcgagcgcc tccacgaggt tcgccgcgta ggtctcgttg ccggcgaggc
    14581 cggtcccgac cgagtgcgcg tcaatcgcta tgtgcacgga ttaaaggcgg ctccgaatct
    14641 ttatctttaa taagacggca gggcggtatt atacttcgcc cgcgcgcccg agcccgagcg
    14701 cgcggcagtt cgccttttta agagtagaga ctcctcgcgc gacttccccg ccggaagata
    14761 aggagaccgc catgaactta tgtgtcgtta aaagggtggc gctgtcgctg atgctgtcgg
    14821 cctgcgcggc gctcgcggcg cccgcgggcg gcggcgcccg gacgaaggcc gccgcggcgg
    14881 cgccgccgcc gaaccccatc ctcgtctttc tggggcagga ggtttacgag acgggcggca
    14941 agcagtggtt gcgctacagg tactccgtca tgaacctctc ggagtacccg aacgagatgt
    15001 tcgcggcggc gccggagctt ccgccctgcg gccagaacac gagcgcctcg cgcacctggg
    15061 ttgacttcta cgaccagtcg ggcaagcgcc tgtacggctt ctgcgcgctc ggcagccgcg
    15121 acaacctctc gcagatatgg ttcgccctcg aactggacgt gctcccgccg agctgggtct
    15181 atgtggagct taacgacagg aagaccaaca ccaagtacaa gtctaacctc gcggagacga
    15241 cgctgtagct aacccggctc ctctccctga gccacttcgt cgccggccgc gtcgtcgccc
    15301 tcgcccgcac cggcttcccc cggcaacacg ccgcggaagc tcttgcggtg gatggggcag
    15361 cagccgtgct cgcgaagggc ggcccagtgc tcgcgcgtcc cgtagccgac gtgacgcgcg
    15421 aagccgtagt gcgggaactc ctcgtggtag cggcgcatga gccggtcgcg gtaggtcttg
    15481 gcgaggactg aggcggcggc gatggacgcc gagatggagt cgccgcgtat gatggccttc
    15541 tgcggcagcg gcgactcgcg cagttgaagg gcgtctatca aaagaaaatc ggcgcacgtc
    15601 gtgaggcctt cgagtgcctt catcatcgcg cgccgcgtgg ctacgagtat gttggtggcg
    15661 tctatctctt cggggccgac gacgccgtag gcgtgacaga ccgcggtgcg ccgcagctcc
    15721 ccggctatgc gctcgcgctg taaggccgtg agcctcttcg agtcgtccag gccctcgggg
    15781 agcgacgccg cggggtcgag tatgacggcc gccgcaacga cgggcccggc cagcgcgccg
    15841 cggcccactt cgtccagccc cgcgaccatc ctgtggccgc gcgcgcgcgc ctcctcctcg
    15901 aacagcagac ctacggacga ctcgcgcctc ttcatacgaa agcgccgcct gacgccgccc
    15961 ttacttgttc ttgttcgagg ccgaggcgcc ctgcgcctgc ccgctcgcgc cggtgttggc
    16021 ttggcgcgtg tcgcgctcgc gtatgcgggc ggccttgccg cgcagctcgc gcaggtagta
    16081 gagcttcgcg cggcgcaccc ggccgcggcg caccacctgt atgctggaga cgatggggcc
    16141 gtgcagcggg aacatgcgct cgacgccgac gccgaagctg accttgcgca ccgttatcgt
    16201 ctcgcgcacg ccgccgccct tgcgcgcgat gacgacgccc tcgaacgcct gaaggcgctc
    16261 cttagtctcc gactccttga tgcgcacctg cacgcggacg gtgtcgccgg gcgcgaagtc
    16321 cgggatgtcc gtgcgcaact gcgccttctc tatcatgtcc aagcggttca taattcacct
    16381 cgaaaaactg tcgtccgaac gact
//
LOCUS       DASPKR010000211         2393 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_285057, whole genome shotgun sequence.
ACCESSION   DASPKR010000211 DASPKR010000000
VERSION     DASPKR010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2393)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285057"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VD968_05810"
     CDS             <1..255
                     /locus_tag="VD968_05810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13937.1"
                     /translation="SEVTLDDGLKLVLLVEDRAGYSTLCRLITQGRRRSAKGEYRLLR
                     EDLADGLPGLLVLWLPGATPSRAGGRPLTTSANRRRTSRR"
     gene            complement(218..400)
                     /locus_tag="VD968_05815"
     CDS             complement(218..400)
                     /locus_tag="VD968_05815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13938.1"
                     /translation="MWDRKRQIIWLGAGLVFGTFFLYPLALDEGTGRLDWQYFLQLET
                     LLIVIIGVMFYVYSRK"
     gene            complement(409..1605)
                     /locus_tag="VD968_05820"
     CDS             complement(409..1605)
                     /locus_tag="VD968_05820"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYE13939.1"
                     /translation="MTTTAPTKHRHVSEKASRFAESVIREMTREALRHGAVNLSQGFP
                     DFPAPEEIKLAAAQAIHDDVNQYAITWGAKEFRDAIAEKTRWHLGLDVDPEREITVTC
                     GSTEGMIAAMMACVDPGEEVVIFEPFYENYAPDAILSGATPRYVPLRPPDWSFDRDEL
                     RAAFGPRTKAVILCNPNNPTGKVFTRDEMEYVAGLCREFDALCFTDEIYEHIIYPRDD
                     REVRHISMAQLEGMRERTVVVNSMSKTYSVTGWRVGYVLAPPHITGALRKVHDFLTVG
                     AAAPLQRAGAFALRLPREYYERLQTDYLRRRDVLLPILEEAGFRVFRPDGAYYVMTDI
                     GAFGFKDDLEFTRHLIQEVGVACVPGSSFYSRPELGASQVRFCFCKKDETLAAAAERL
                     AKLRRK"
     gene            complement(1776..>2393)
                     /locus_tag="VD968_05825"
     CDS             complement(1776..>2393)
                     /locus_tag="VD968_05825"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE13940.1"
                     /translation="VPLKETTDRAELLFQQAEEEREKGGGAARAAELYREALAIRPRF
                     AAAHVGLARVLSALDDHDGALEQIEEARRDRPGYAEASAVEGRVLRAMADYDGALAAY
                     ARAVREARGFQPEAHTGAGLVHEDKGRHEEAVAAFRKAIAQLSDTEPVLYELLGRNLE
                     KLERWKDAADAYDKYLVLAPEGPHASAIRSIIDQLRRQAAEQEQQ"
BASE COUNT          354 a          760 c          848 g          431 t
ORIGIN      
        1 agcgaggtca ccctcgacga cggcctgaag ctggtgctgc tggtcgagga ccgcgcgggc
       61 tactccacgc tttgccgcct gattacccag gggcgccgcc gttcggccaa gggcgagtac
      121 cggctgctgc gcgaggacct cgccgacggc ctgcccggcc tgctggtgct gtggcttccc
      181 ggcgcgacgc cctcgcgcgc gggcggccgc cccctcacta cttccgcgaa tagacgtaga
      241 acatcacgcc gatgatgacg atgaggagtg tttcgagttg gaggaagtat tgccagtcga
      301 gccgccccgt gccttcgtcg agcgcgagcg ggtagaggaa gaacgtgccg aagacgagcc
      361 ccgcgcccag ccagatgatt tgacgcttcc tgtcccacat ctcgggagct acttcctgcg
      421 gagctttgcg aggcgctcgg cagcggcggc gagcgtctcg tcctttttgc agaagcagaa
      481 gcgcacctgg gaggcgccga gctcggggcg gctgtagaag ctcgacccgg ggacacaggc
      541 tacaccgacc tcctggatga ggtggcgcgt aaattccagg tcgtctttga agccgaaggc
      601 gcctatgtcg gtcatcacgt agtaggcgcc gtccgggcgg aagacccgga agcccgcctc
      661 ttcgagtatg gggaggagca cgtcgcggcg gcgaaggtag tccgtttgca ggcgctcgta
      721 atactcgcgc gggagccgca gggcgaaggc accggcgcgc tgcaaaggtg ccgcggcgcc
      781 cacggtgagg aagtcgtgaa ccttccggag cgcgcccgtt atgtgcggcg gcgcgagcac
      841 gtagccgacg cgccagcccg tcacagagta ggtcttcgac atcgagttga cgaccacggt
      901 gcgctcgcgc atcccctcta gctgcgccat ggagatgtga cgaacttcgc ggtcgtcgcg
      961 cgggtagatg atgtgctcgt agatttcgtc tgtgaagcag agcgcgtcga actcgcggca
     1021 caagccggcg acgtactcca tctcgtcgcg cgtgaagacc ttgcccgtgg ggttgttcgg
     1081 gttgcagagg atgacggcct tcgtgcgcgg gccgaaggcg gcgcgaagct catcgcggtc
     1141 gaaagaccag tcgggcgggc gcaaggggac gtagcgcggc gtggcgccgg agagtattgc
     1201 gtcgggcgcg tagttctcgt agaagggctc gaatattacg acctcctcgc cggggtcaac
     1261 gcaggccatc atcgcggcga tcatgccctc ggtcgagccg caggtgacgg ttatctccct
     1321 ctcggggtca acgtccaggc cgaggtgcca gcgcgtcttt tcggcgattg cgtcgcggaa
     1381 ctccttcgcg ccccaggtta tcgcgtactg gttcacgtcg tcgtggatgg cctgggcggc
     1441 ggcgagcttt atctcctctg gcgcggggaa gtcggggaac ccttgagaga ggttgacggc
     1501 cccgtgcctg agggcctcgc gcgtcatctc gcgtatgacc gactcggcga agcggctcgc
     1561 cttctcggag acgtgacggt gctttgtggg cgctgtggtc gtcatgtaaa ttattctcgc
     1621 gcgcggccgc ggcggcgcgc aacccagagg gtttcagacg atgagcgaaa gtagcaaatg
     1681 cccgatgggc gagcacccgt ggctcgcggt cttcctggcg ctcgccttca tactcacctt
     1741 cctggcgagc aagctggggc ttctgtgatt gcggcctatt gctgttcctg ctcggcggcc
     1801 tgccggcgca gttgatcaat gatggagcgt atggcgctgg cgtgcgggcc ttcgggcgcg
     1861 agcacgaggt acttgtcgta ggcgtctgcc gcgtccttcc acctctcaag cttctcaaga
     1921 tttctgccca gcagttcgta gagcacgggc tcggtgtcgg agagctgcgc gatggctttg
     1981 cggaacgcgg cgacggcctc ctcgtggcgg cccttgtctt cgtggacgag gccggcgccc
     2041 gtgtgcgcct cgggctggaa gcctcgcgcc tcgcgtacgg cgcgggcgta ggccgcgagc
     2101 gcgccgtcgt agtcggccat agcgcgaagt acgcgcccct cgacggccga agcctccgcg
     2161 tatccgggcc ggtcgcggcg cgcctcctct atctgttcga gcgcgccgtc gtggtcgtcg
     2221 agcgcggaga gcacacgggc gaggccgacg tgcgccgcgg cgaagcgcgg gcgaatggct
     2281 agcgcctcgc ggtagagctc ggcggcgcgc gccgcccccc cgcccttctc gcgctcctcc
     2341 tcggcctgct ggaagagcag ctccgcgcgg tcggtcgtct ccttcagtgg cac
//
LOCUS       DASPKR010000212        12025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_803569, whole genome shotgun sequence.
ACCESSION   DASPKR010000212 DASPKR010000000
VERSION     DASPKR010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12025)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12025
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_803569"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1398
                     /locus_tag="VD968_05830"
     CDS             <1..1398
                     /locus_tag="VD968_05830"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HYE13941.1"
                     /translation="PTATPTPTPTVTPTPTATPTPTATPTPNASPTPLPNSVVQFSSS
                     LYAVQEDCTQVVAQVVRSGVTTGRVTVDVNSNDGTAKQKGDYTYVVGRLVFEPGETQK
                     ALPILISEDAYAEGPESFTLSLSNPTGGATLAGAITATVQIADDNAEQNSNPIDDSRT
                     FVCQHYHDFLYRHPDQAGEDFWTQGIESCGSGEQCRQERRVDTSTAFFLSIEFQNTGY
                     FVIRVRKAAFGNDKSNPRYAIFLRDQRTISEGVVIGTPGSGERLEQNRQRYLEDLVSS
                     PEYTAAFPQGMQRGQYVNKLFANAGVTPTTAERDEARDAYGTGDTAGRAAALRSVAES
                     DSVFLAQYNPAFVLMQYFGYLRRNPDDPPDNNFLGYDFWLAKMNSFSLPNENVRNETV
                     ALQRVRRAEMVRAFIESIEYRNRFHGAPGGNQQGSQAQSQPPAVSDAGRKWREELARA
                     LSLAFEPAFRAGLRL"
     gene            1639..5523
                     /gene="smc"
                     /locus_tag="VD968_05835"
     CDS             1639..5523
                     /gene="smc"
                     /locus_tag="VD968_05835"
                     /inference="COORDINATES: protein motif:HMM:TIGR02168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HYE13942.1"
                     /translation="MFKLQRLEITGFKSFADPTELVFTGNGITAIVGPNGCGKSNVAD
                     AIAWVLGEQRVKALRGGEMKDVIFQGSRTRPPSGMAEVVLHMVHDETFEEEPDIDDID
                     ATLEDLDDQAGAIEERLAPELGAAPEAEAQAAEPTEVSAAAAAETAAEAAPAGEGGGV
                     QPDAPAAKPRQPHHHRRHWRPRRMALDFAPGETVSVTRRLYRSGESEYLLNGRLCRLR
                     DIQDLFSGTGLSGAHYAIIEQGRIGQILSAKPMDRRTLIEEAAGITKFRVRQRAAEAR
                     LEAARTNLNRVSDIISEIERQVGSLRRQAAKARRYQQIREELRELLRRVYAADERTLE
                     DRLEALRAGLASANEEVERLAAELEEKEGEARRATTEAREREEELAEARAAVSESALR
                     RDRRERERAYQEEQIAALERRLSEVRQEAEQVRARLSSVMSESESLVLRDVQMREASE
                     DSARRLEEAEGAYARRVAEVTEAESAIESARGELLTHTAASERLMEIGRQLDAAAEKL
                     ALQAEGLAREGERAAAAHAQAKADAARLQEEIAAARARLDTLYSEREGRIRQLSEARA
                     QVESAAAEHARVRDEAARVRHRLDTLSEIDSLKSLYSQAVRRIFSPEDGDAPKDFHII
                     GTLADVLRVEPHWERAVESVMGPYLQSVIVPTPDDAVRASAWLQATGAGRATFIVAGL
                     HGGAETVDGDDEFGRAAGVADYAETDEVRVANLLGAPREIGAVLGRTLSRETGARVVR
                     DLERAMILTLPTGEMCVTADGEWAIGGQLIAAGGPPVAAEEGAGLLSFKREMRELEVR
                     MVGIEADLMFADEAASRARARLGELEDAFVLLNDEIGRQEREHVAREVSAAQLQQEIE
                     RAERHMRVVADDAARLAEEQREVEERRDRQRAEAEAAEAARQAAQRTVAGAGEALAEA
                     RRAAEAESENLSRQRALAAAAAERRRSAASELRRMESETGELQSRLERHEREAEETFA
                     RLEELRGSLAGLAESAGRDEGERMTLEERVSEASERLAEARRRADALSLEVTELHQRA
                     SEARDSRSALEVQRAEAAARLDFVRESCVNELNQTLEEVAASFEPGEGFDLESSRARL
                     EELRARVESFGAVNMMALEELAENEERLTFLTAQRQDITDGIASTVEALREIKRRSRE
                     RFRHAFEEVNRNFGQFFVELFGGGRGEMSLLDAEDVLESGIDIVAQPPGKRLQNVLLL
                     SGGEKAMAALSLVLAIFKYRPSPFCLLDEVDAPLDEANVGRFSAKVVEMSADTQFLVI
                     THNKRTMEAARALYGVTMEEAGISKLVSVRFE"
     gene            5529..6314
                     /locus_tag="VD968_05840"
     CDS             5529..6314
                     /locus_tag="VD968_05840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13943.1"
                     /translation="MWKFLNALSVAAALASAGAILQARAQKKATRPAAQQQQAPRKVS
                     TRPGGANKPADGGAGGAAAKPKEDPNAARFTYEFRHPDFFVYFIHVEHDDRGRGVIRF
                     ERRSDTEQITEPFELAPAALERIAAHWAALKFLDSTAEYQGERTYPSYGKSRLTMRQG
                     GRERTAEFNYSQDENAMGLVNEYRKAADQAVLVFELKIALESQPLETPKLIDRIERLI
                     ERNALSDAAQLTPLLRELSEDERIPLVGRNQLARILKKLDKQP"
     gene            complement(6394..6519)
                     /locus_tag="VD968_05845"
     CDS             complement(6394..6519)
                     /locus_tag="VD968_05845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13944.1"
                     /translation="MTDAGAKELIAVLVVMAGLFLFGVAAVVVFVRVWRRERGKK"
     gene            complement(6532..7932)
                     /locus_tag="VD968_05850"
     CDS             complement(6532..7932)
                     /locus_tag="VD968_05850"
                     /inference="COORDINATES: protein motif:HMM:NF013741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HYE13945.1"
                     /translation="MTALKLISILVIVAANGFFVAAEFAFVGVRRSRIEALASEGNAR
                     ARRLLRILGNLNAYLSASQLGITLASLALAILGEPTIAALIEEPLGRLLVSTGLFGES
                     AVAHGAEGGTFNVVKHSVAFVIAYSLLTSLHITLGEQAPKLFGLERAERVAMFSALPM
                     EVFYKVFRPFIHALDWASAAMVRPFGLHATGEHASAYTEAELRQVIEMSRRGGHIQEE
                     EQKLINRVFDFADAEVREAMIPRTEVQALPVTATLADVESAFCEYGFSRMPVYSERLD
                     DIAGILFMKDLMPCLRTVSPQEFSMERMLHPPLFVPASAKLGSVLRQMQAGKTHIACV
                     VDEHGGLEGIVTLEDLLEEIVGEINDEYDEESRSQIVEEPGGTYLLDGMLAVRDANRH
                     FDLKLPEEAGYTTMAGFLLAQAGRILTPGETVAHDGASFLVEQVEGRRIRRIRYTPAP
                     AAPDGEPEEQEAARDA"
     gene            complement(7929..9071)
                     /locus_tag="VD968_05855"
     CDS             complement(7929..9071)
                     /locus_tag="VD968_05855"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYE13946.1"
                     /translation="METITDSGWAGGSRRARGGDCAHVPSQALSERLAEVARAFRSKP
                     FRPHPLLRGGHAQTIVAALRHERYRPWRSPNGLPFEPRLLEVEPGARVLLKCLWQDER
                     ERAPALLLIHGLEGSSDSPYILGTARRAFARGFNVACLNMRTCGGTEHLTPTLYHSGM
                     TGDIAAAVSELASRDRVRRIYVAGFSMSGNMVLKLAGDYGGAAPEELAGVCAVSPSID
                     LSGCADRIELRSNAVYRASFMRSLRGRMRRKQRLHPELYDVRGLRRVRTIRQFDDRYT
                     ARHGGYGDASSYYERASSLGVIPRIRTPTLIIHAEDDPIIPAEPFRSPSITDNPDVLL
                     VLTSRGGHVGFLSGDPAGDERHWAEQRVAEFCEMLERQNSGDHLTK"
     gene            complement(9166..9381)
                     /locus_tag="VD968_05860"
     CDS             complement(9166..9381)
                     /locus_tag="VD968_05860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13947.1"
                     /translation="MTIRNPNAEQPQPGDQPELPPTRPEDPAQPEPPPLPPDTDPSPS
                     APVREPSPAPMPAGDPPPSEPTRLARA"
     gene            complement(9414..>12025)
                     /locus_tag="VD968_05865"
     CDS             complement(9414..>12025)
                     /locus_tag="VD968_05865"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0043138 - 3'-5' DNA helicase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RecQ family ATP-dependent DNA helicase"
                     /protein_id="HYE13948.1"
                     /translation="EGFREGQREVIDAILAGHDTVVVMPTGGGKSLCYQLPALMKDGV
                     TVVVSPLIALMKDQVDALQARGLPATFVNSSLDFEEQKERIAGVRRGAFKLLYVAPER
                     FRSQFFVETLQSAPVSLFAVDEAHCISQWGHDFRPDYLRLKSFVERIGRPQTVALTAT
                     ATPYVRSDIIEQLSLRDPRAFVSGFDRPNLSIGVVRTEREREKIARIRQLATEYAGQS
                     GIIYASTRKSVEQVTQKLREARLSVVGYHAGMTDEERVRAQEGFMSGGVQMIVATNAF
                     GMGIDKPDIRFVAHYQMPGSIEAYYQEIGRAGRDGQPSVCLLLFNYADKRTQDYFIEG
                     SYPPPEIIARVYESLVGTGERRIELSTREIAARAGIRNEMAVQSALITLEKAGHIERG
                     AAGENRASVRLLMPAHLAREAVAARRSAQLKQVLFGLLGGYDLSEREDAEIDLNDFAQ
                     TLGLEPAALHRCVSSLAESGVIAFRPARRTRGLVMLDERPASRLRIRPEDLARRAALE
                     QRKLREMISFCYTERCYRAFILDYFGDRSHDATCGRCGNCLMQERRGRGDADSEAAGG
                     DALPPLEPAGRLDKFVMEHVPAGLGLEDELAESSRARRRRERAEALAAEGDSDHEASQ
                     AESIGVNEPRDLTPEESLIARKILACAARMGGRFGKGMLASTLRGSRSAKLSQAGLDR
                     LSTYGILPDMTQDEIFLYVDALVAAGCMHVTGGAYPTIALTDLGNDLMRERATAQLPL
                     PPLRQPRSVAPARTRTARAEEPAAPPAPKVSTVEETYALYEQGLTVEEICAQRGLTEM
                     TVEKHLADCIAAGRPFDLSAHVSDEDRRLIAEAAVRIGPERLKPLREALPRHITYRMI
                     RFVVADMRRGGEQ"
BASE COUNT         1948 a         4060 c         4255 g         1762 t
ORIGIN      
        1 cctactgcca cgccgacgcc tacgccgacc gtgaccccga cgccgaccgc gacgcccacg
       61 ccgacggcaa cgcccacgcc caacgcgtcg ccgacgccgc tgccgaactc ggtcgttcag
      121 ttcagctcct cgctctacgc cgttcaggag gactgcacgc aggtcgtcgc gcaggtcgtg
      181 cgctcgggcg tcacaacggg gcgcgtcacg gttgacgtga acagcaacga cgggacggcc
      241 aagcagaagg gcgactacac ctacgtcgtc ggccgcctcg tcttcgagcc gggcgagacg
      301 cagaaggctc tgcccatcct cataagcgag gacgcatacg ccgaggggcc ggagtccttc
      361 acgctgtcgc tctcgaaccc gacgggcggc gcgaccctgg ccggcgccat cacagcgacc
      421 gtccagattg cagacgacaa cgcagagcag aactcgaacc cgatagatga ctcgcgcacc
      481 ttcgtctgcc agcactacca cgacttcctc tatcgccacc ccgatcaggc gggcgaggac
      541 ttctggacgc agggtatcga gtcgtgcggc tcgggcgagc agtgccggca ggagaggagg
      601 gttgacacgt ccaccgcctt cttcctctcc atagagttcc agaacaccgg ctacttcgtg
      661 atacgcgtgc gcaaggcggc tttcggcaac gacaagtcga acccgcgcta cgccatcttc
      721 ctgcgcgacc agcgcacgat aagcgagggc gtcgtcatag gcacgcccgg ctcaggcgag
      781 cgcctcgagc agaaccgcca gcgctacctc gaagacctcg tctcgtcgcc cgagtacacg
      841 gccgccttcc cgcaggggat gcagcgcggg cagtacgtta acaagctctt cgccaacgca
      901 ggcgtcacgc ccacgacggc cgagcgcgac gaggcccgcg acgcctacgg cacgggcgac
      961 accgcggggc gagccgccgc ccttcgctcg gtggccgaga gcgactcggt cttcctcgcg
     1021 cagtacaacc cggccttcgt gctgatgcag tacttcgggt atctgaggcg caacccggac
     1081 gacccgccag acaacaactt cctcggctac gacttctggc tggcgaagat gaactccttc
     1141 agcctgccga acgagaacgt gcgcaacgag accgtcgccc tgcagcgcgt gcggcgggcc
     1201 gagatggtgc gggccttcat cgagtccatc gagtaccgca accgcttcca cggcgcgccc
     1261 ggcggcaacc agcagggcag ccaggcgcag agccagccgc ccgccgtctc cgacgcgggc
     1321 cgaaagtgga gggaggagct ggcgcgggcg ctctcgctgg ccttcgagcc cgcgttccgc
     1381 gccggcctgc gactctagga ggctgatagg aagcgcgtgc ggcggccccg accggcatga
     1441 gaacaggccg gggccgccgc gcgccgctct ttattaaatc ttctccctgc tatgactaac
     1501 ccgccgcggc ttaaagtttc ggtttgacac cgccagctgc tccaacatat agtgtgcctc
     1561 tcccgcaccg tgctctaggt actgtgcttg cgcgcagaaa cggcccaggg cagcccgacg
     1621 tggaatagtc acgcgcaaat gttcaaactt caacgactag agataaccgg cttcaagtcc
     1681 ttcgccgacc ccacagaact cgtcttcaca ggaaatggca tcaccgccat cgtcggcccg
     1741 aacggctgcg gtaagtcgaa cgtggccgac gcaatcgcct gggtcttggg cgagcagcgc
     1801 gtcaaagcgc ttcgcggcgg cgagatgaag gacgtgattt tccagggttc gcgcacacgg
     1861 cctccgagcg gcatggccga agtcgtgctc cacatggtgc acgacgagac gttcgaggaa
     1921 gagccggaca ttgacgacat agacgccacg ctcgaagacc tagacgacca ggccggcgcc
     1981 atcgaggagc ggctcgcccc cgaactgggc gccgcgccgg aggccgaagc tcaagccgcc
     2041 gagccgaccg aagtgagcgc ggcggccgcg gctgagaccg cggccgaagc cgcgccggcc
     2101 ggggagggcg gaggagttca gcccgacgcc ccggcggcca aaccccgtca gccgcaccac
     2161 cacaggcgcc actggcggcc gcgccgcatg gccctcgact tcgcgccggg cgagaccgtc
     2221 tccgtcaccc gccgcctcta ccgctccggc gaaagcgagt acctgctgaa cgggcgcctc
     2281 tgccgcctgc gcgacataca agacctcttc tccggcaccg gcctctcggg cgcgcactac
     2341 gccatcatcg agcaggggcg catcggccag attctctcgg ccaagccgat ggacaggcgc
     2401 acgctcatcg aggaggccgc agggataacg aagttccgcg tccgccagcg cgccgccgag
     2461 gcgcgcctcg aagccgcccg cacgaacctc aaccgcgtct ccgacatcat ctccgagatc
     2521 gagcgccaag tcggcagcct ccgccgtcag gcggcgaagg cccggcgcta tcagcagatt
     2581 cgggaggagc tgcgcgagct tctgcgccgc gtctatgccg ccgacgagcg cacgctcgag
     2641 gaccgcctcg aagccctgcg cgcggggtta gcctctgcga acgaggaggt cgagcgcctc
     2701 gccgcggagc ttgaggagaa ggaaggcgag gcccggcgcg ctacgaccga ggcgcgggaa
     2761 cgtgaggaag agctcgccga ggcccgcgcc gccgtctcgg agtccgccct acgccgcgac
     2821 cgacgcgagc gcgagcgcgc ctaccaggaa gagcagatcg cggccttaga gcgccgcctc
     2881 tccgaagtcc ggcaggaagc cgaacaggtg cgcgcgcgcc tctcttccgt catgtccgag
     2941 agcgagtctc tcgtcctgcg cgacgtgcag atgcgcgagg cgagcgagga cagcgcacgc
     3001 cggctggaag aggccgaggg cgcatacgcg cgccgcgtcg ccgaggtgac ggaggccgag
     3061 tcggcgatag agagcgcgcg cggcgagctt ctgacgcaca cggccgcctc cgagcgcctg
     3121 atggagatag gtcgccagct cgacgcggcg gccgagaagc tcgcgctcca ggccgagggg
     3181 ctcgcgcgcg agggcgagcg cgccgcggcc gcgcacgcgc aggctaaggc ggacgccgcc
     3241 cggctccagg aagagatagc agccgcgcgc gcacggctcg atacgctcta ctctgagcgc
     3301 gagggccgca tacgccagct ctccgaggcg cgcgcgcagg tcgagtcggc cgcggccgag
     3361 cacgcccgcg tgcgcgacga ggcggcgcgc gtccgccacc gcctcgacac gctctccgag
     3421 atagactcgc tcaagtcgct ctactcgcag gcggtgcgcc gcatcttctc gcccgaggac
     3481 ggcgacgcgc ccaaagactt ccacatcatc gggacgctcg ccgacgtgct ccgcgtcgag
     3541 ccgcactggg agcgcgctgt cgagagcgtg atggggccgt acctgcaatc cgtcatcgtg
     3601 ccgacgcccg acgacgccgt gcgcgcttca gcctggcttc aggcgacggg cgcggggcgc
     3661 gcgaccttca tcgtagccgg cctgcacggc ggcgccgaga ccgtggacgg cgacgatgag
     3721 ttcggccggg cggccggcgt cgctgactac gcggagacgg acgaggtgcg cgtcgccaac
     3781 ctcctgggcg cgccgcgcga gataggcgcc gtgctagggc gcacgctctc gcgcgagacg
     3841 ggcgcgaggg tcgtgcgcga cttggagcgc gcgatgattc tgacgctccc caccggcgag
     3901 atgtgcgtga cggcggacgg cgagtgggcc atcggcggcc agttgattgc ggcgggcggc
     3961 ccgcccgtcg ccgccgagga gggcgcgggg ctcctctcct tcaagcgcga gatgcgcgag
     4021 ctcgaagtca ggatggtggg catcgaggcc gacctgatgt tcgccgacga ggccgcctcg
     4081 cgcgcccgcg cgcgcctggg cgagctcgaa gacgccttcg tgctcttaaa cgacgagata
     4141 ggccggcagg agcgcgagca cgtcgcgcgc gaggtcagcg ccgcgcagct tcagcaggag
     4201 atagagcgcg ccgagcgcca catgcgcgtc gtcgcggacg acgcggcgcg gctcgccgaa
     4261 gagcagcgcg aggtcgagga gcgccgcgac cggcagcgcg ccgaggcgga ggccgccgag
     4321 gcggcacggc aggctgcgca gcgcacggtc gccggggcgg gcgaggctct ggccgaggcg
     4381 cggcgcgccg ccgaggccga gagcgagaac ctcagccgcc agcgcgcgct agccgctgca
     4441 gccgccgagc gccggcgctc ggccgcgtca gagcttcgca ggatggagtc tgaaacgggc
     4501 gagcttcagt cgcggctgga acgccacgag agggaggccg aggagacgtt cgcgcgcctc
     4561 gaagagctgc gcggctcgct cgcggggctc gccgagtcgg ctggccggga cgagggcgag
     4621 cgcatgacgc tcgaagagcg cgtctcggaa gcctccgagc ggctagcgga ggcgcggcgc
     4681 cgcgccgacg cgctctcgct cgaagtcacg gagctgcacc agcgcgcctc agaagcgcga
     4741 gactcgcgct cggccctcga agtgcagagg gccgaggccg cggcccgcct cgacttcgtg
     4801 cgcgagtcct gcgtgaacga gctgaaccag acgctcgaag aggtcgcggc ctcgttcgag
     4861 ccgggcgagg gcttcgacct cgaatcgtct cgcgcgcggc tggaagagtt gcgcgcccgc
     4921 gtcgagtcct tcggcgccgt caacatgatg gcgctcgaag agcttgccga gaacgaggag
     4981 cgcctgacgt tcctgacggc ccagcggcag gacatcacgg acggcatcgc ctcgaccgtc
     5041 gaggcgctgc gcgagataaa gcgccgctcg cgcgagcgct tccgccacgc cttcgaggag
     5101 gtcaaccgca acttcgggca gttcttcgtc gagctgttcg gcggcggccg cggcgagatg
     5161 agcctgctcg acgccgagga cgtgctcgaa tcgggcattg acatcgtcgc gcagccgccg
     5221 ggcaagcgcc tgcagaacgt gctgctgctc tcgggcggcg agaaggccat ggcggcgctc
     5281 tcactcgtgc tggcgatatt caagtaccgc ccgtcgccct tctgcctcct ggacgaggtg
     5341 gacgcccctc tcgacgaggc gaacgtcggc cgcttctcgg cgaaggtcgt cgagatgtct
     5401 gccgacacgc agttcctcgt catcacgcac aacaagcgga cgatggaggc ggcgcgcgcc
     5461 ctctacggcg tgacgatgga ggaggcgggg atttccaagc tggtctcggt gaggttcgag
     5521 tgaagggaat gtggaagttt ctaaacgcgc tttcggtcgc ggccgcgctc gcttcggcgg
     5581 gcgcgattct tcaggcgcgc gcgcagaaga aggctacgcg ccccgccgcg cagcaacagc
     5641 aggcgccgcg caaggtttcg acccgacccg ggggcgcgaa caagcctgcc gacggcggcg
     5701 cgggcggggc ggccgctaag ccgaaggaag acccgaacgc cgcgcgcttc acctacgagt
     5761 tcaggcaccc ggacttcttc gtctatttca tacacgtcga gcacgacgac cgcggccgcg
     5821 gcgtcatacg cttcgagcgg cgctcggaca cggagcagat aaccgagccg ttcgagctcg
     5881 cgccggccgc ccttgagcgc atcgcggcgc actgggcggc gctcaagttc ctcgactcga
     5941 ccgcggagta ccagggcgag cgcacctacc cgagctacgg caagtcgcgc ctgacgatgc
     6001 ggcagggcgg gcgcgagcgc acggccgagt tcaactacag ccaggacgag aacgcgatgg
     6061 ggctcgtcaa cgagtaccgc aaggccgcag accaggccgt gctcgtcttc gagctgaaga
     6121 tagctttgga gagccagccg ctcgaaacgc ccaagctcat tgaccgcatc gaaaggctca
     6181 tcgagcgcaa cgcgctctcg gacgccgccc agctcacacc gctcctgcgc gagctgagcg
     6241 aggacgagcg catccccctc gtcggccgca accagctcgc gcgcatactc aaaaagctcg
     6301 acaagcagcc ctgacgactg cgggttagaa aagcggggag ggttgatgac ggcgccgccg
     6361 tcatcaaccc tctttcctta tccctccccc gccttacttc ttcccgcgct ccctgcgcca
     6421 cacacgcacg aagacgacga cggcggcgac gccgaacaga aacagccccg ccatcacgac
     6481 gagcaccgcg ataagctctt tcgccccggc gtcggtcatc gcgttaaagc cttacgcgtc
     6541 gcgcgcggcc tcctgctctt cgggctcgcc gtcgggcgcc gcgggcgcgg gcgtgtagcg
     6601 tatgcggcgt atgcgccggc cctcgacctg ctcgacgagg aagctcgcgc cgtcgtgagc
     6661 gaccgtctcg ccgggcgtca gtatccgccc ggcctgcgcg agcaggaagc cggccatcgt
     6721 cgtgtagccc gcctcctccg gcagcttcag gtcgaagtgg cggttggcat cgcggacggc
     6781 gagcatgccg tctagcaggt aagtcccgcc cggctcctcg actatctgcg agcgcgactc
     6841 ctcgtcgtac tcgtcgttta tctcgccgac gatctcttcg agaaggtctt ccagagtcac
     6901 tatgccttcg agcccgccgt gctcgtccac gacgcaggcg atgtgcgtct tgccggcctg
     6961 catctgcctg agcaccgagc cgagcttggc ggaggcaggg acgaagagcg gcgggtgcag
     7021 catccgctcc atgctgaact cctgcgggct cacggtgcgc aggcagggca tcaggtcttt
     7081 catgaagagt atgccggcga tgtcgtcgag gcgctcgcta tagacgggca tgcgcgagaa
     7141 tccgtactcg cagaaggccg actcgacgtc ggcgagcgtg gccgtgacgg gcagcgcctg
     7201 cacctccgtg cgcgggatca tggcctcgcg cacctcggcg tctgcgaagt cgaagacgcg
     7261 gttgatgagc ttctgctctt cctcctgtat gtggccgccc ctgcgcgaca tctcgatgac
     7321 ctgccgaagc tcggcttccg tgtaggccga ggcgtgctct cccgtggcgt gcaggccgaa
     7381 ggggcgaacc atcgcggcgc tcgcccagtc gagcgcgtgg atgaaggggc ggaagacttt
     7441 gtagaacacc tccatcggca gcgccgagaa catcgcgacg cgctccgcgc gctcgaggcc
     7501 gaagagcttc ggcgcctgct cgcccagcgt tatgtgcagc gaggtcagca gcgagtaggc
     7561 gatgacgaag gcgaccgagt gcttgacgac gttgaaggtg ccgccctccg cgccgtgcgc
     7621 gaccgccgac tcgccgaaga gccccgttga gaccagcagg cggccgagcg gctcctcgat
     7681 gagtgcggcg atggtgggct cgccgagtat ggcgagcgcc agcgacgcga gcgtgatgcc
     7741 gagctgcgag gccgacaggt atgcgttcag gttcccgagt atgcggagga gcctgcgcgc
     7801 gcgcgcgttg ccctccgagg cgagcgcctc tatgcgcgag cggcgcacgc ccacgaacgc
     7861 gaactctgcg gccacgaaga agccgttcgc agctacgatg acgaggatgg agatgagctt
     7921 gagtgcggtc attttgttaa gtggtcacct gaattctgcc tttcgagcat ctcgcagaac
     7981 tcggcgacgc gctgctcggc ccagtggcgc tcgtcgccgg ccgggtcgcc ggagaggaag
     8041 ccgacgtggc cgccgcggct cgtgagcacg agcagcacgt cggggttatc agtaatcgag
     8101 gggctccgga acggctcggc ggggatgatg gggtcgtcct ccgcgtggat tatgagcgtg
     8161 ggcgtgcgta tgcgtgggat gacgccgagg gagctcgcgc gctcgtagta gctcgaagcg
     8221 tcgccgtagc cgccgtgccg ggcggtgtag cggtcgtcga actgccgtat ggttctgacg
     8281 cgccgtagcc cgcgcacgtc gtaaagctcc gggtggaggc gctgcttcct gcgcatgcgc
     8341 ccgcgcaggc tccgcatgaa gctcgcgcga tagacggcgt tgctgcggag ctctatccgg
     8401 tcggcgcacc ccgaaaggtc aatcgagggc gagacggcgc acacgcccgc cagttcctcc
     8461 ggcgcggcgc cgccgtaatc gcccgcgagc ttcaagacca tgttgccgct catcgagaag
     8521 ccggcgacgt agatgcgccg cacgcggtcg cgcgacgcga gctcggagac ggcggctgcg
     8581 atgtcgcccg tcatgccgct gtggtagagg gtcggcgtca ggtgctccgt tccgccgcac
     8641 gtgcgcatgt tcaggcaggc gacgttgaag ccgcgcgcga aggcgcgccg cgcggtgccg
     8701 aggatgtagg gcgagtcgct tgagccttcc agcccgtgta tgagcaggag ggcaggcgcc
     8761 ctctcgcgct cgtcctgcca gaggcacttg agaaggacgc gcgcgccggg ctcgacttcg
     8821 agcagtcgcg gctcgaaggg gaggccgttc ggcgagcgcc agggccggta gcgttcgtgg
     8881 cgcagtgccg cgacgatggt ctgggcgtga ccgccgcgca ggagcgggtg ggggcggaag
     8941 ggcttcgagc ggaaggcgcg cgctacctcg gcgagccgct cgctgagcgc ctgcgagggg
     9001 acgtgcgcgc agtcgccgcc ccgcgcccgc cgcgagcccc cggcccaccc gctgtcagtg
     9061 atcgtttcca tcgcgccgcg ttcgtgcgga atttacccgc caggattata aatgaagcgg
     9121 cgccgccgac ggaacacaat cgagtggggt aagtaggcgg ccgcttcacg cgcgggcgag
     9181 gcgcgtcggc tccgacggcg gagggtcgcc ggcaggcatc ggggcgggcg aaggctcgcg
     9241 gacgggcgcg gaggggctcg ggtcggtgtc gggcgggagc ggcggcggct cgggctgcgc
     9301 ggggtcttcg ggccgcgtgg gcggaagctc tggctggtcg ccgggctgcg gctgctcggc
     9361 gtttgggttg cggattgtca tctgaaactc tcccccctct ctgactcctg aatttattgt
     9421 tcgccgcccc tgcgcatgtc ggcgacgacg aagcggatca tgcggtaggt gatgtggcgc
     9481 ggcagggcct cgcgcagggg cttgaggcgc tcggggccta tgcggacggc cgcctccgcg
     9541 atgaggcggc ggtcttcgtc gcttacgtgc gcggagaggt cgaaggggcg ccccgccgcg
     9601 atgcagtcgg cgaggtgctt ctccacggtc atctcggtca ggccgcgctg cgcgcaaatc
     9661 tcctcgaccg tgaggccctg ctcgtagagc gcgtaggtct cttcaacggt gctgaccttc
     9721 ggcgcgggcg gcgcggccgg ctcttcggcg cgggccgtgc gagtgcgcgc gggggcgacg
     9781 ctccgaggtt ggcgcagcgg cggcagtggg agctgggctg tggcccgctc gcgcatcagg
     9841 tcgttgccga ggtctgtgag cgcgattgtc gggtaggcgc cgcccgtgac gtgcatgcag
     9901 ccggccgcga ccagcgcgtc aacgtagagg aagatttcgt cctgcgtcat gtcggggagg
     9961 atgccgtagg tggaaagacg gtcgaggccg gcctgcgaga gcttcgccga gcgcgagccg
    10021 cgcaacgtcg aggcgagcat ccccttgccg aaacgcccgc ccatccgcgc cgcgcaggcc
    10081 aaaatcttgc gcgctatcag agactcttcc ggggtgaggt cgcgcggctc gttgacgccg
    10141 attgactctg cctgagaggc ttcgtggtcg gaatcgccct cggcggcgag cgcctctgca
    10201 cgctcgcgcc tgcgccgcgc gcgcgagctt tcggccagct catcttccaa ccccagccct
    10261 gcgggaacgt gctccatcac gaacttatct agccgccccg ctggctcaag cggcggcagg
    10321 gcgtcgccgc ccgccgcttc ggagtcagcg tcgccgcgcc cgcgcctttc ctgcatgagg
    10381 cagttgccgc acctgccgca ggtcgcgtcg tgcgagcggt cgccgaagta gtcgaggatg
    10441 aaggcgcggt agcagcgctc cgtgtagcag aaggagatca tctcgcgtag cttgcgctgc
    10501 tctaaggcgg cgcgccgcgc gaggtcttcg gggcgtatgc gcaggcgcga ggcagggcgc
    10561 tcgtcgagca tgacgagccc gcgagtgcgg cgcgccgggc ggaacgcgat tacgcccgac
    10621 tcggcgagcg acgagacgca gcggtgcagg gcggccggct caaggccgag cgtctgcgcg
    10681 aagtcgttca agtcaatctc agcgtcctcg cgctcgctca ggtcgtagcc ccccagaagc
    10741 ccgaagagaa cctgcttgag ctgcgcgctg cggcgggcgg cgacggcctc gcgcgcaagg
    10801 tgcgcgggca ttagaagccg gactgaggcg cggttctcgc ccgcggcgcc tcgctctatg
    10861 tggcctgcct tctcgagcgt gatgagcgcg gactggacgg ccatctcgtt gcgtatgccg
    10921 gcgcgggctg ctatctcgcg cgtggagagc tctatgcgcc gctcgcccgt ccccaccagc
    10981 gactcataga cgcgggcgat gatttcgggc ggcgggtagg agccctcgat gaagtagtcc
    11041 tgcgtgcgct tgtcggcgta gttgaagagg agcaggcaga ctgaaggttg gccgtcgcgg
    11101 cctgcgcggc ctatctcctg gtagtaagcc tcaatcgagc cgggcatctg gtagtgggcg
    11161 acgaagcgta tgtcgggctt gtcaatcccc atcccgaagg cgttcgtggc gacgatcatc
    11221 tgcactccgc ccgacatgaa cccttcttgc gcgcgcacgc gctcttcgtc ggtcatgccg
    11281 gcgtggtagc cgacgacgga gagcctcgcc tccctaagct tctgcgtgac ctgctcgaca
    11341 gacttgcgcg tggaggcgta gatgatgccg gactggccgg cgtactccgt ggcgagctgg
    11401 cgtatgcgcg ctatcttctc gcgctcgcgc tcggtgcgga cgacgccgat tgagaggttc
    11461 ggtcggtcga agccggagac gaaggcgcgc gggtcgcgca aactaagctg ctcgattatg
    11521 tcggagcgga cgtaaggggt ggccgtggcc gtcagcgcca cggtctgcgg gcgcccgatg
    11581 cgctcgacga aggatttcag gcgcaggtag tcggggcgga agtcgtggcc ccactgggag
    11641 atgcagtgcg cctcgtccac ggcgaagagc gagacgggcg cgctctgcaa ggtctcgacg
    11701 aagaactggc tgcggaagcg ctcgggcgcg acgtagagca gcttgaacgc gccgcgccgc
    11761 actcctgcga tgcgctcctt ctgctcctcg aagtcgagcg agctgttgac gaaggtcgcg
    11821 ggaaggccgc gcgcttgaag ggcgtcaacc tgatccttca tcagcgctat caggggcgag
    11881 acgacgacgg tcacgccgtc tttcatcaag gcgggtagtt gatagcagag cgacttgccg
    11941 ccgcccgtgg gcatgacgac gacggtgtcg tggccggcta gtatggcatc tatgacctcc
    12001 cgctggccct cgcggaaacc ctcga
//
LOCUS       DASPKR010000213         2549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1451521, whole genome shotgun sequence.
ACCESSION   DASPKR010000213 DASPKR010000000
VERSION     DASPKR010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1451521"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(159..1328)
                     /locus_tag="VD968_05870"
     CDS             complement(159..1328)
                     /locus_tag="VD968_05870"
                     /inference="COORDINATES: protein motif:HMM:NF026257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HYE13949.1"
                     /translation="MRPARQLRPEAELLLACSRTRLSGETRERIRCLARGNLDWASVR
                     QLAHRHGVFPLLYRQLSAAAQELVPPAELKSLRAKFLDNAARNVLLTSELEQLVGRFE
                     SAGLPVLAYKGPALAALAYGDTALRRYVDLDVIVRRADVGRAKSLLAERGLRPHLALP
                     PAQERVLLRAQHNMQFTRDEGRVLVELHWEVASRKFASAQLEGGVWERAVPVRLGRGE
                     VKSLSPEDLLSSLCVHGARHLWERLSWICDVAELLGSRPRLDWDYVFGRARAERTERM
                     LLLGLLLAGGQLGAEMPGEIRRRATADETAAALAECVSRRLFERDEYGRAGIAESVGF
                     NLRARERWGEKLRYLGFIFTPTDADLALVRLPAGLSFAYYLVRPFRLLLGSGKEH"
     gene            complement(1336..1992)
                     /locus_tag="VD968_05875"
     CDS             complement(1336..1992)
                     /locus_tag="VD968_05875"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HYE13950.1"
                     /translation="MKARIDAIVRREQAEYLDRLLPANSGLLAEMEAYAEEHRVPIAD
                     REVARFLEITARATGARRALEIGMAIGYSVVHLARSMPEDGLVVTIEPSDEMIARSEE
                     YLVRAGLRERVRVERGRALEVIPRLTETFDIVFLDALKEEYTGYLDLSLPLLRAGGVV
                     ICDNLLWGGQVAGEIRSPEQTASTQALRAFNQHFVRHPQLLAVVLPVGDGLGYAVKVA
                     "
     gene            complement(2036..>2549)
                     /locus_tag="VD968_05880"
     CDS             complement(2036..>2549)
                     /locus_tag="VD968_05880"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYE13951.1"
                     /translation="IPPLRERREDIPGLAEAFAQRGAERYNLPPRTLAPSALRKLVEY
                     DWPGNVRELRNTIERAIILAEGPEVTAGDLPEEVGGAARERREEPATAEHPGALSVPF
                     TSDFREDRREFERRYIARCLEESGGNVTRAASVLGMHRQSLQHKLRELGLARRYVAVG
                     GDEPTEKSDG"
BASE COUNT          408 a          839 c          901 g          401 t
ORIGIN      
        1 tgaaagaaga taaagagcag ctatccagct tgggatttat taaacgggca agcggaagct
       61 aacacaaacg gcacgcgggc gtcaacgggg agcggcgcgg gcctcgtcgc cgtaaacatt
      121 ttgttcacgc acgttaggca ccgcgcccgc cgcgcgggct agtgctcttt cccggagccg
      181 aggagcaggc ggaagggcct cacgaggtag tacgcgaagg agagcccggc agggagacgc
      241 acgagcgcga ggtcggcgtc cgtcggcgtg aagatgaagc cgaggtagcg cagtttctcg
      301 ccccaccgct ctcgcgcgcg gaggttaaac ccaacgctct cggctatgcc ggcccggccg
      361 tactcgtccc gctcgaagag gcggcgggag acgcattcgg cgagcgccgc tgccgtctcg
      421 tctgccgtcg ctcgccttct aatctctccc ggcatctcgg ccccgagctg gccgccggcc
      481 agcaacaggc cgagcagcag catcctctcc gtcctctcgg cgcgcgcgcg cccgaagacg
      541 taatcccaat cgagccgggg ccgggagccg agcaactcgg ccacgtcgca tatccacgac
      601 aggcgctccc acaggtggcg ggcgccgtgg acgcagagcg acgagaggag gtcttcgggc
      661 gacaggcttt tgacctcgcc ccgcccgagc cggacgggga cggcgcgctc ccacacaccc
      721 ccctcgagtt gcgccgaggc gaacttgcgt gaggccactt cccaatgaag ctcgactaga
      781 acgcggccct cgtcgcgcgt gaactgcatg ttgtgctggg cgcgcagcaa gacgcgctcc
      841 tgcgcgggcg ggagcgcgag gtgcgggcgg agcccgcgct cggcgaggag cgacttggca
      901 cgcccgacgt ctgccctcct gactatcacg tcgaggtcaa cgtagcggcg cagtgccgtg
      961 tcgccgtagg ccaaagcggc gagcgctggc cccttgtaag ccaggacagg caggccggcc
     1021 gactcgaagc ggccgacgag ctgttccagc tcactcgtca gcaagacgtt ccgcgcggcg
     1081 ttgtcgagga acttcgcgcg caggctcttg agctctgccg gcggcacgag ttcctgggcg
     1141 gccgcgctca gttggcggta gagaagcggg aagacgccgt ggcggtgcgc gagttgcctg
     1201 acggaagccc agtcaagatt gccgcgggcg aggcagcgta tgcgctcgcg cgtctcgccg
     1261 ctgaggcgcg tgcgggagca ggcgagcagc agctctgctt cgggccgcag ttgacgggcg
     1321 gggcgcacgc tgtcttcagg cgaccttgac ggcgtagccg aggccatcgc cgacgggcag
     1381 cacgacggcg agcagttgcg ggtggcggac gaagtgctgg ttaaaggcgc gcagggcctg
     1441 cgtcgatgcg gtctgctcgg gcgagcgaat ctcgcccgca acctgcccgc cccacagcag
     1501 gttgtcacag attacgacgc cgcccgcgcg caggagcggg agcgacaggt caagatagcc
     1561 cgtgtactcc tccttgagcg cgtcgaggaa gacgatgtcg aaagtctcgg tgaggcgagg
     1621 tatgacttcg agggcgcggc cgcgctcgac gcgcacgcgc tcgcggaggc cggcgcgcac
     1681 gaggtactcc tcgctccgtg cgatcatctc gtcgctcggc tcgatggtga cgacgaggcc
     1741 gtcttccggc atagagcgcg cgaggtggac gaccgaatag ccgattgcca tgcctatctc
     1801 gagagcgcgg cgcgcgcctg tggccctcgc cgttatttcg aggaagcgtg cgacctcgcg
     1861 gtcggcgatg gggacgcggt gctcttcggc gtaagcctcc atctcggcga gcagccccga
     1921 gttggcgggc aggagcctgt ctaggtactc ggcctgctcg cgccgcacaa tcgcgtcaat
     1981 gcgtgctttc atctacgaat ctccgtgata gttatcggca atcttcatcc gactctcagc
     2041 catccgactt ttccgtcggc tcatcgccgc ctacggccac gtagcggcgg gcgaggccga
     2101 gttcgcgaag cttgtgctgg agcgactgcc ggtgcatgcc gaggactgag gccgcgcgcg
     2161 tgacgtttcc gcccgactct tcgaggcagc gggcgatgta gcgccgctcg aactctcgcc
     2221 tgtcctcgcg gaagtctgaa gtgaaaggca cggagagcgc tccgggatgt tcggcggtag
     2281 cgggctcttc gcgacgctcc cgcgcggcgc cgccgacctc ttcgggcaag tcgccggccg
     2341 tcacctccgg gccttcggcg aggatgatgg cgcgctcgat ggtgttccga agctcgcgga
     2401 cgttgcccgg ccagtcgtac tcgaccagct ttcgcagcgc cgaaggcgcg agcgtgcgcg
     2461 gcgggaggtt gtagcgctcg gccccccttt gcgcgaaggc ttcggcgagg ccgggtatgt
     2521 cctcgcgccg ctcccgcagc ggcgggatt
//
LOCUS       DASPKR010000214         7407 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_804102, whole genome shotgun sequence.
ACCESSION   DASPKR010000214 DASPKR010000000
VERSION     DASPKR010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7407)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7407
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_804102"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(153..356)
                     /locus_tag="VD968_05885"
     CDS             complement(153..356)
                     /locus_tag="VD968_05885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13952.1"
                     /translation="MANERPKVENEISEGTGQFDSRFVLWRRFCSETGVPVETLPSEL
                     TGEHRERWEKLKDERLHKPAEEA"
     gene            515..1273
                     /locus_tag="VD968_05890"
     CDS             515..1273
                     /locus_tag="VD968_05890"
                     /inference="COORDINATES: protein motif:HMM:NF037672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector HopA1 family protein"
                     /protein_id="HYE13953.1"
                     /translation="MIRTDGVRAGSWRRVYQVLPSGQVLAHKDGRTRALWPGEFLSTD
                     APGMALRPGMNLSVFFMRETKTMQPGFYFAFGEAQAGELDNFSLARLYWNVRAEGAVP
                     LMRTVTRGLNRFQVPFRFKCLTNSAFYARNDAAVLYVDKRFFRVTARVLAGFYEEVAR
                     HLRPDAPLFTKPLAAGLALAEEPYTGESFGMQRCRILAEAVLSAHARGLRDEASRLGE
                     VERHFAAYGLQLEAPYLNPRSVDQYEFDPQREAA"
     gene            1270..2559
                     /locus_tag="VD968_05895"
     CDS             1270..2559
                     /locus_tag="VD968_05895"
                     /inference="COORDINATES: protein motif:HMM:NF017000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0031179 - peptide modification [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lanthionine synthetase LanC family protein"
                     /protein_id="HYE13954.1"
                     /translation="MSARPDEFLEAADFIAARLCRDAVWAGARCNWLGDSMEFVGGQW
                     SVAHRAFGPELYGGTSGVALFLTEAYRLTGEPLFRATALGGLRQALSRLEDFAAPGRA
                     GFYTGRTGVAYALARAGEIFEDESLTGRGLELIEGLTADEPDERMTDVLAGSAGAVAA
                     LIALHKKYGRDFLLELAVRHGNFLVGAARKTAAGWSWNTLNIEPERRREDLTGFSHGA
                     GGISWALLELWRATGEGKFRVSAEQGFRYERSHFSPEQENWPDYRGLYDPFMGGGQQQ
                     QQQQQGPGFMVAWCHGAPGLGLSRVRAYAITGDESYKAEAEVALRTTARTLAQPVYAG
                     QGNYSLCHGSFGNAELLLYASRALPGAGAEYLALAEQVARQGIEQCQKSYSPWPCGVM
                     GGGETPGLLLGLAGIGHFYLRLHDPEGVPPVLIILPD"
     gene            complement(2556..3176)
                     /locus_tag="VD968_05900"
     CDS             complement(2556..3176)
                     /locus_tag="VD968_05900"
                     /inference="COORDINATES: protein motif:HMM:NF013918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase
                     heme-binding subunit MsrQ"
                     /protein_id="HYE13955.1"
                     /translation="MRDVKFYKLVLFANGLVPLALLAWDWRRGQVGANPVDFVTRTTG
                     TLTLVFLLLTLAVTPLRKLTGAQWLVRLRRMLGLYAFFYGSLHLLTYVWFDKAFAVGP
                     MLEDVARRKFIAVGLLAFTTMVPLAVTSTDRMIKRLGGKRWQKLHRLTYVSAAAGVLH
                     YYLLVKADTRKPLLFAAALAVLLGYRLYVSYSKRLKAEPLSLGRPG"
     gene            complement(3173..4147)
                     /gene="msrP"
                     /locus_tag="VD968_05905"
     CDS             complement(3173..4147)
                     /gene="msrP"
                     /locus_tag="VD968_05905"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF003767.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016667 - oxidoreductase activity, acting
                     on a sulfur group of donors [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HYE13956.1"
                     /translation="MLIKKPGDVKGSEITDRKLYLSRRLFLRGAVLAATGLGTGLAYR
                     QLLTPEIQKPTPSGRAAPGSHGAQKQWGLPGEEATPYGDVTTYNNFYEFGTDKYSPAR
                     RAQNFVTRPWAVTVEGLVNKPRTFDLEEILKLAPQEDRIYRFRCVEGWSMVIPWLGFP
                     LAELLKRVEPLGKARYVAFETVNDPEGRNCPQTDALSWPYVEGLRLDEAMHPLTILAT
                     GLYGEPLMPQNGAPLRLVVPWKYGFKSIKSVVRVRLVEHMPATTWVSEIPSVYGFFSN
                     VNPEVDVLRDQAAEQRIGEWGRRRTLPFNGYAEQVASLYDGMDLRYYR"
     gene            4367..5086
                     /locus_tag="VD968_05910"
     CDS             4367..5086
                     /locus_tag="VD968_05910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13957.1"
                     /translation="MKKIYTAFVAIVLAVATATTVAAGQSKGKGSEAGAVRAPLNLAV
                     LIQDDLVPRVGNELEVTSDFIRSLPRGSRVMVGYIRSGSLQVRQEFTEDLTLAASALR
                     IPAGSTAVSPYNPYVEVREALKHFPEGGANRNALLLISDGLDASRGLDFSSSVTSVDL
                     ERAVREAKKRNVAVYSFYAPSVGLTSRSRFAASLGQSALNRISGETGGRAFFQGNNFV
                     TFNAYFRRLSEALNERNGVAY"
     gene            5261..5611
                     /locus_tag="VD968_05915"
     CDS             5261..5611
                     /locus_tag="VD968_05915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13958.1"
                     /translation="MKGHSPEYCLIVEGSYLSVSEAEHALRDPFIEDWVEQTGRFRIH
                     NLGEMEIVPGVTLGQLGVEMLDDGLFEIASLDPEHPLTEHKARGVADALRRQDMFDEI
                     TVEPRQLADDDESL"
     gene            5746..6306
                     /locus_tag="VD968_05920"
     CDS             5746..6306
                     /locus_tag="VD968_05920"
                     /EC_number="3.1.1.106"
                     /inference="COORDINATES: protein motif:HMM:NF001664.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyl-ADP-ribose deacetylase"
                     /protein_id="HYE13959.1"
                     /translation="MPGQTKAAFLGGRVSVGVGDITRQRVDAVVNAANSSLMGGAGVD
                     GAIHGAGGPSILEECRRIRRTLYPDGLPTGEAVITGAGRLPARYVIHTVGPVWGSEGG
                     REAELLARCYRRSLALASERGCLSVAFPAISTGAFGYPPDEAAAVSSLAIAEHLSEDD
                     SLREVRLVFFSERGLELFLRNHKFGA"
     gene            6352..>7407
                     /gene="glgP"
                     /locus_tag="VD968_05925"
     CDS             6352..>7407
                     /gene="glgP"
                     /locus_tag="VD968_05925"
                     /inference="COORDINATES: protein motif:HMM:TIGR02094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HYE13960.1"
                     /translation="MAQMIGEAEPLTNEQQRRALPETIAALERISQNYWWSWSADGTA
                     VFRDLDQELWNDCEHNPRRLLREISEYSLMRMATDPDYIHRVGRLAEKFDSYMTETAR
                     TWAAAHAPEITSERPVAYFCAEFGIHHSLPLYSGGLGILAGDHLKSASDLGLPLVAVG
                     LLYHHGYFRQRLRRDGWQEETYHKIDVEELPLTLVEGDDGEPVVLVLSMRGRDVRVRA
                     WLVQVGRVKLYLLDTDVEGNDEIDRYITGHLYGGDRETRCVQEMVLGVGGVRLLRELG
                     VEPRVFHLNEGHSAFLTLELARELTAEGRSFDEAKEAVRSRCVFTTHTPIAAGHDEFT
                     PALIESCFGEGYWRSLGL"
BASE COUNT         1229 a         2522 c         2441 g         1215 t
ORIGIN      
        1 ggtcgtctac tccggccacg gccccgagac gaccgtcggc cgcgagcgcc gcacgaaccc
       61 cttcctgacg gggcgatacc tttaaggccg tgaaccgtga accgtaaacc gtgacaggag
      121 gaagcgattc ttacttcgtc acggttcacg gtttacgctt cttcggcggg tttgtgcagg
      181 cgctcgtcct tgagcttctc ccagcgctcg cggtgctcgc cggtcagttc gctggggagg
      241 gtctcgacgg ggacgccggt ctcggaacag aacctgcgcc agaggacgaa gcgggagtcg
      301 aactgccccg tcccttcgga aatctcgttc tccactttgg gtctctcgtt cgccactgcc
      361 gccttgctcc ttcgggtcaa cgtttgccgg acagtgtagc aaaaagagta gacagtagac
      421 agtagacagt aggaagacga agcggcgcgc ccggcccaaa ggctgagtcg cgccgcctct
      481 gtttttctac tgtctactgc cctctcccgg caggatgata aggacggacg gggtgcgcgc
      541 ggggtcgtgg aggcgggtct atcaggtcct gccgtcgggg caggtgctgg cgcacaagga
      601 cgggcgcacg cgcgcgctgt ggccgggcga gttcctttcg accgacgcgc cgggcatggc
      661 gctgcggccg gggatgaacc tctcggtctt cttcatgcgc gagacgaaga cgatgcagcc
      721 cggcttctac ttcgccttcg gcgaggcgca ggcgggcgag ctggacaact tcagcctcgc
      781 gcgcctctac tggaacgtgc gcgccgaggg ggccgtcccg ctcatgcgca cggtcacgcg
      841 cggcctcaac cgcttccagg tgcccttccg cttcaagtgc ctgaccaact ccgccttcta
      901 cgcgcgcaac gacgcggccg tcctctacgt ggacaagcgc ttcttccgcg tcaccgcgcg
      961 cgtcctcgcg ggattttatg aagaggtcgc gcgccacctc cgccccgacg cgccgctctt
     1021 caccaagccg ctcgccgcgg gcctcgcgct cgccgaagag ccgtacacgg gcgagagctt
     1081 cggcatgcag cgctgccgca tcctggccga agccgtcttg agcgcgcacg cgcgggggct
     1141 ccgtgacgag gcgtcgcggc tcggagaggt cgagagacac ttcgcggcct acggcctcca
     1201 gctcgaagcg ccgtacctca acccgcgctc ggtagaccag tacgagttcg acccgcagcg
     1261 ggaggccgca tgagcgcacg gccggacgag ttcctcgaag cggccgactt catcgccgcg
     1321 cgcctgtgcc gcgacgcggt ctgggccggc gcgcgctgca actggctcgg cgactcgatg
     1381 gagttcgtcg gcggccagtg gtctgtcgcg caccgcgcct tcggccctga actctacggc
     1441 ggcacgagcg gcgtcgccct cttcttaaca gaagcctaca ggctcacggg cgagcccctc
     1501 ttccgcgcga cggcgttggg cggcctgcgc caagcgctct cgcgcctcga agacttcgcc
     1561 gcgccgggcc gcgccggctt ctacacgggc cgcacgggag tcgcatacgc cctcgcgagg
     1621 gccggagaga ttttcgagga cgagagttta acggggcgcg ggcttgagtt aatcgagggg
     1681 ctgacggccg acgaaccgga cgagcgcatg acggacgtgc tcgcggggag cgccggcgcc
     1741 gtcgctgcgc tcatcgcgct ccataaaaag tacggccgcg actttctctt ggagctcgca
     1801 gtccgacacg gcaacttcct cgtcggcgcc gcgcgcaaga ccgccgccgg gtggtcttgg
     1861 aacaccttga acatcgagcc ggagcggagg cgcgaagacc tcaccggctt ctcgcacggc
     1921 gcgggcggca tcagttgggc gcttctggag ctttggcgcg ctacgggtga agggaagttc
     1981 cgcgtctccg ccgagcaggg cttccgctac gagcgctcgc acttcagccc cgagcaggag
     2041 aactggcccg actaccgcgg cctctacgac cctttcatgg gcggcggcca acagcagcag
     2101 cagcagcagc aggggccggg cttcatggtc gcctggtgcc acggcgcgcc ggggctgggg
     2161 ctttctcgcg tgcgcgccta cgccatcacg ggcgacgaga gctacaaggc cgaggccgag
     2221 gtggcgcttc gcacgaccgc acgcacgctc gcacagcccg tctatgcggg gcagggaaac
     2281 tactcgcttt gccacgggag cttcggcaac gccgagcttc tgctctacgc gagccgcgcc
     2341 ctgcccggcg ccggcgccga gtacctcgcg ctcgccgagc aggtcgcccg tcaggggata
     2401 gagcagtgcc agaagagcta cagcccctgg ccctgcggcg tcatgggcgg cggcgagacg
     2461 cccggcctcc tgctcggcct cgcgggaata gggcacttct acctacgcct gcacgacccc
     2521 gaaggcgtcc ccccagtcct cattattctt ccagattaac cgggacggcc gagcgacagc
     2581 ggctccgcct tcagcctctt cgagtaagag acgtagagcc tgtagccgag cagcacggcg
     2641 agcgcggcgg cgaagaggag cggcttgcgc gtgtcggcct tgacgagcag gtagtagtgc
     2701 agcacgcccg ccgcggccga gacgtatgtg agccggtgaa gcttctgcca gcgcttgccc
     2761 cccagccgct ttatcatcct gtccgtcgaa gtgaccgcga gcggcaccat cgtcgtgaag
     2821 gcgagaaggc ctacggctat gaacttgcgg cgcgcaacgt cctcgagcat ggggccgacg
     2881 gcgaacgcct tgtcgaacca gacgtatgtg agcaggtgga gcgagccgta gaagaaggcg
     2941 tagaggccga gcatgcgacg gagccgcacg agccactgag cgcccgtgag cttccgcaag
     3001 ggcgtgaccg ccagcgtcag cagcaggaag actaaagtca gcgtgcccgt cgtcctcgtc
     3061 acgaagtcaa cggggttcgc gccgacctgc ccgcgccgcc agtcccacgc gaggagcgcc
     3121 agcggcacga ggccgttcgc gaagaggacg agcttgtaga acttgacgtc cctcaacggt
     3181 agtacctcaa gtccatcccg tcgtagagcg aggccacctg ctcggcgtag ccgttgaagg
     3241 ggagcgtgcg cctgcggccc cactcgccta tgcgctgctc ggcggcctgg tcgcggagca
     3301 cgtcaacctc ggggttcacg ttcgagaaga acccgtaaac gctcggtatc tccgataccc
     3361 acgtcgtcgc cggcatgtgc tcgacgaggc gcacgcgcac gaccgacttg atgctcttga
     3421 agccgtactt ccacggcacg acgagccgta gcggcgcgcc gttctgcggc atcagcggct
     3481 cgccatagag ccccgtcgcg agtatcgtga gcgggtgcat cgcctcgtcc agccgaaggc
     3541 cctcgacgta gggccacgag agcgcgtccg tctgcgggca gttgcgcccc tcgggatcgt
     3601 tgacggtctc gaaggcgacg tagcgggcct tgcccaaagg ctctacgcgc ttgagcagct
     3661 cggcgagcgg gaagccgagc cacggtatca ccattgacca gccctcgacg cagcggaagc
     3721 ggtagattct gtcctcctgc ggcgcgagct tcagaatctc ttcgaggtcg aacgtcctgg
     3781 gcttgttcac caggccctcg accgtgaccg cccacgggcg cgtgacgaag ttctgagcgc
     3841 gccgcgcggg gctgtacttg tcagtgccga actcgtaaaa gttgttgtag gtcgtaacgt
     3901 cgccgtaagg cgtggcctcc tcgcccggca ggccccactg cttctgcgcg ccatgcgacc
     3961 ccggcgcggc ccggcccgaa ggcgtaggct tctgaatctc cggcgtgagc aactgccggt
     4021 aggcgaggcc cgtccccagc cccgtcgctg ccagaaccgc gccgcgcagg aagaggcgcc
     4081 ggctcaggta aagcttcctg tccgttatct cgctgccctt cacgtcgccc ggcttcttta
     4141 tgagcatact gccatctccc gaccgacgaa tttacggccg gcggggccgc cgcggattcg
     4201 gtattgttaa tcacgcccgg ccttaatctt attccacccg cgcgccgcgc gctaacgccg
     4261 ggccggaggc caaccctcgc gcgagagccg tcatcaaaat agacgtgaaa tcttaggcaa
     4321 acgctcgccc cggcgcgttg aaagagccgg ggcaggaaga aaggttatga agaagattta
     4381 tacagctttc gtcgcaatcg ttctggccgt cgccaccgcg accacggtcg ccgcgggtca
     4441 gagcaagggc aagggctcgg aggcgggcgc cgtgcgcgcg ccgctcaacc tcgccgtgct
     4501 catacaggac gacctagtcc cgcgcgtcgg caacgagctc gaagtcactt ccgacttcat
     4561 acgctccctg ccgcgcggct cgcgcgtgat ggtcggctac atacgctccg gctcgcttca
     4621 ggtgcgccag gagttcaccg aagacttgac gctcgccgcc agcgccctcc gcatccccgc
     4681 gggctcgacg gcggtgtcgc cctacaaccc ttacgtcgaa gtacgcgagg ccctcaagca
     4741 cttcccagag ggcggcgcca accgcaacgc cctgctgcta atctccgacg ggctcgacgc
     4801 ctcgcgcggc ctcgactttt cctcctcggt cacgtccgtt gacctggagc gcgccgtgcg
     4861 cgaggcgaag aagaggaacg tcgccgtcta ttcgttctac gccccttcgg tcggcctgac
     4921 gagccgcagc cgcttcgcgg ccagcctcgg ccagagcgcg ctcaaccgca tctctggcga
     4981 gacgggcggc cgggccttct tccagggcaa caacttcgtc accttcaacg cgtacttccg
     5041 gcgcctgagc gaggcgctca acgagcgcaa cggcgtagca tactgaggga gacggcctga
     5101 cccgttgtcg taaaggggct gccttcgggc ggccccttta actttctgct ttgaaaaatt
     5161 ttctggcccg gccggggcgg gcggtggtaa agtttgcgcg cggcgcgacc cccgataagc
     5221 ccgaaccgtc cgcgccgggc gcgcccgcgc gtctcacgcc atgaaaggcc actccccgga
     5281 atactgcctg atcgtcgaag gctcttacct ctccgtctcg gaggccgagc acgcgctccg
     5341 agaccccttc atagaagact gggtcgagca gaccggccgc ttccgcatac acaacctcgg
     5401 cgagatggag atagtccccg gcgtcacgct cggccagctc ggcgtcgaga tgctggacga
     5461 cggcctcttc gagattgcga gccttgaccc cgagcaccct ctgaccgagc acaaagcgcg
     5521 cggcgtggcc gacgcgctcc gccggcagga catgttcgac gagataacgg tcgagccgcg
     5581 ccaactcgcg gacgacgacg agtcgttgta agatggcggg tcgtccggcc ccgccgggcc
     5641 ggcggccgaa gggcggaaag aaggggaatt cccggctccc gcccgaaatt ttgtcgtcac
     5701 agactctccc gtgttcgcct ttactcggtt ccggtgctaa attcgttgcc cggacaaact
     5761 aaggccgcct tcctcggcgg gcgcgtcagc gtaggagtcg gcgacatcac gcggcaaagg
     5821 gttgacgccg tcgtcaacgc cgcgaactcc tcgctcatgg gcggggccgg cgtggacggc
     5881 gcgattcacg gggcgggcgg gccttcgatt ctcgaagagt gcagaaggat tcggcgcacg
     5941 ctctaccccg atgggctgcc gaccggcgaa gccgtcatca ctggcgcggg gcgcctgccg
     6001 gcgcgctacg tgatacacac ggtcggcccc gtctggggaa gcgaaggcgg gcgcgaggcc
     6061 gagctgctcg cgcgttgcta caggaggtct ctcgcgctcg cctcggagcg cggctgtctg
     6121 tcggtagcct tcccggccat ctccacgggg gccttcggct acccgccgga cgaggcggct
     6181 gccgtctcgt cgctggccat agccgagcac ctcagcgaag acgactcctt gcgcgaagtg
     6241 cgcctcgtct tcttctcgga gcgcggcctg gagctttttt tacgcaatca taaattcggc
     6301 gcgtgagccc gcaggcccga cgcgccgcgg aaagatagag actttaattt gatggcacag
     6361 atgattggag aggccgagcc gttgaccaat gagcagcaga ggcgcgcgct gcccgagacg
     6421 attgcggcgc tcgaacgaat ctcgcagaac tactggtgga gctggtctgc ggacggcacg
     6481 gccgtcttcc gcgacctgga tcaggagctg tggaacgatt gcgagcacaa cccgcgcagg
     6541 ctgctacgcg aaatctcgga gtacagcctg atgaggatgg cgaccgaccc cgactacatc
     6601 caccgcgtcg ggcggctcgc cgagaagttc gactcttaca tgacggagac cgcgcgcacg
     6661 tgggccgcgg cgcacgcgcc cgagataaca agcgagcgcc ccgtcgcgta cttctgcgcc
     6721 gagttcggca tacaccactc gctgccgctc tactcgggcg gcctggggat tctcgcgggc
     6781 gaccacctga agtcggcgag cgacctcggg ctcccgctcg tcgccgtcgg tctgctttat
     6841 catcacggct acttccgcca gcgcctacgc cgcgacggct ggcaggaaga gacttatcac
     6901 aagattgacg tggaggagct gccgctcacc ctcgtcgagg gtgacgacgg cgagcccgtc
     6961 gtgctcgtcc tgagcatgcg cggccgcgac gtgagggtgc gcgcgtggct cgtccaggtc
     7021 ggccgggtca aactgtattt gctcgacacg gacgttgagg gcaacgacga gatagaccga
     7081 tacatcacgg gccaccttta cggcggcgac cgcgagacgc gctgcgtgca ggagatggtc
     7141 ttaggcgtcg gcggcgtgcg gctcctgcgc gagctgggcg tcgagccccg cgtgttccac
     7201 ctgaacgaag gccactcggc cttcctgact ctggagcttg cgcgggagct cacggcagag
     7261 ggccggagct tcgacgaggc gaaggaggcc gtgcgctcgc gctgcgtgtt cacgacgcac
     7321 acgcccatcg cggccggtca cgacgagttc acgcccgcac taatcgagtc ctgcttcggc
     7381 gagggctact ggcgctcgct cggcctc
//
LOCUS       DASPKR010000215         2624 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_416602, whole genome shotgun sequence.
ACCESSION   DASPKR010000215 DASPKR010000000
VERSION     DASPKR010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2624)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_416602"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..809
                     /locus_tag="VD968_05930"
     CDS             <1..809
                     /locus_tag="VD968_05930"
                     /inference="COORDINATES: protein motif:HMM:NF021375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA/RNA helicase domain-containing protein"
                     /protein_id="HYE13961.1"
                     /translation="PKAKRSDRPLIEHIIEAAKVTVFFIDDLQVVRPDEVGRVALIEE
                     TVQRMGVNLYEFELETQFRCNGSDGFVKWVDNTLGLRPTANECWDINDPFEFKIFNDV
                     RELERAIRDKQTNTDTARLVAGFCWKWSAPDAEGNLIGDVAIGDWAMPWNAKSDAGRL
                     AAGIPRSHFWASDPKGINQVGCIYTAQNFEFDYVGVIFGLDLRYDTTSRKWVADKNQS
                     FDSVVTKAEEDHYLALVKNAYRVLLTRGLKGCYVYFLDPATRDYFESRLC"
     gene            complement(969..1718)
                     /locus_tag="VD968_05935"
     CDS             complement(969..1718)
                     /locus_tag="VD968_05935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13962.1"
                     /translation="MGERQETVQAAGAAAQRGLVTHAVLVGLTPLIPVPVLDDVVKGY
                     FRRRLVRALAASAGRALSDEDVSALAAEGGGGCLRGCVVQAVVYPLKKIFRKVFFFLE
                     WKRAVDLTSQTYHFGYLTAYAMTGAGEGRPAPLDVRRAGDVAAAIEAVCREAPVKPVE
                     TAVGATFRQSRRVLSGAAGLLGQSLRRLAGRADPSRVAEAIEEVEPQEEREIEPVVAR
                     LQRSLAAVPDEHFRRLRQQLDARLGVQEESR"
     gene            1746..>2624
                     /locus_tag="VD968_05940"
     CDS             1746..>2624
                     /locus_tag="VD968_05940"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYE13963.1"
                     /translation="MAIRTVLICTTQVPFTRGGGEAHVENLRRALEEAGYAAEVAAVP
                     FKWYPPQEIMRGALAWRMLDVTEANGRPVDLVVGMKFPAYLVAHPRKVLWVMHQYRAA
                     YNLWGTPFDDLSTFPDGARARDFVRHCDATFIPEARKVFANSRTVAERLLKYNRIESE
                     PLYHPPPRAERLRAGEQGDYVFYPSRLEPQKRQELLIEAMSHTRTPVRAVIAGGSRER
                     GRYEALVKRHGVGDRVELRGFVGEGELVELYANALGVCYLPFDEDYGYVTLEAMLSSK
                     PVVVARDGGGAAEMVEH"
BASE COUNT          500 a          823 c          824 g          477 t
ORIGIN      
        1 ctcccaaggc aaaacgctct gatcgtccgc tcatagaaca tattatagag gcagcaaagg
       61 tcacggtttt ctttatcgat gacttacaag tggtacggcc cgatgaggtc gggcgcgtgg
      121 ccctaatcga agaaacagtc cagagaatgg gtgtaaatct ttacgagttt gagttggaaa
      181 cccaattccg ctgcaatggg tcggatggat tcgttaaatg ggtcgacaac acactaggac
      241 ttcgcccgac ggccaacgaa tgctgggaca tcaatgatcc tttcgaattt aagattttta
      301 atgacgtgcg cgagcttgag agggctattc gggataagca aacgaatacg gataccgcgc
      361 gtttggttgc cggattctgt tggaaatggt cagcccctga cgcggaaggt aatttaattg
      421 gtgacgtggc aattggagac tgggcaatgc cttggaacgc aaaatccgat gctgggagac
      481 tcgccgcggg tatacccaga tcacattttt gggcctcaga tcccaaaggg ataaatcaag
      541 ttggttgcat atataccgca cagaattttg agtttgatta tgtcggcgtc attttcgggc
      601 tcgacttgcg gtatgacaca actagtagga agtgggtcgc agataaaaac cagtccttcg
      661 attcggtcgt gacgaaggcc gaagaagatc attaccttgc ccttgtaaaa aatgcttacc
      721 gcgtcttgct tacacgcgga ttgaaaggct gttacgttta ctttttagac ccggcgacaa
      781 gggactattt tgaaagccgg ctttgttaat gtgattttga gttgcgccgg gcgcgggcgc
      841 cctattagaa cgagacacgt acaagagccc tgccaacagg ttgaggaaac gcatagcagg
      901 cgcgaatcgg ttagcaagtc tgggtgaaga tggcgtaaag gtttgcttcc cgactacgga
      961 gtcgttcatc acctgctctc ctcctgtacc cctaggcggg cgtcgagctg ctggcggagg
     1021 cggcggaagt gctcgtcggg gacggcggcg agcgagcgtt gcaggcgcgc gacgacgggc
     1081 tctatctcgc gctcctcctg cggctcgacc tcctcaatgg cctcggccac gcgcgacggg
     1141 tctgcgcggc ccgcgagcct ccgaaggctc tgccccaaaa ggccggccgc gcccgagagc
     1201 acgcgcctcg actgccggaa cgtggcgccc accgccgtct cgaccggctt gacgggcgcc
     1261 tcgcggcaga cggcctcgat ggcggcggcc acgtcgccgg cccgtcgcac gtcgagcggg
     1321 gcggggcgcc cttcgcccgc ccccgtcatc gcgtaggcgg tgagatagcc gaagtggtat
     1381 gtctggctcg tcaggtcaac cgcgcgcttc cattcgagga agaagaagac cttcctgaaa
     1441 atcttcttga gaggatagac gacggcctgc acgacgcagc cgcgcaggca accgccgccg
     1501 ccctcggccg cgagcgccga cacgtcctcg tcgctcagag cgcgcccggc cgacgccgcg
     1561 agcgcgcgca ccagccgccg cctgaagtag cccttcacga cgtcgtccag gactggcacg
     1621 ggtatcagcg gcgtcaagcc cacaagcacc gcgtgcgtga cgaggccgcg ctgcgcggcc
     1681 gcgcccgcgg cctgaaccgt ctcctgcctc tctcccatgc ccacatgata cagtaaacgc
     1741 cccgtatggc gattcgcacg gttctcatct gcaccacgca agtccccttc acgcggggcg
     1801 ggggcgaggc tcacgtcgag aacctgcggc gcgcgctcga agaggccggc tacgcggccg
     1861 aggtcgcggc cgtccccttc aagtggtacc cgccgcagga gatcatgcga ggcgcgctgg
     1921 cgtggcgcat gctcgacgtg actgaggcca acggccgccc agttgacctc gtcgtgggga
     1981 tgaagttccc cgcctacctg gtcgctcacc cgcgcaaagt cctctgggtc atgcaccagt
     2041 accgcgcggc ctataatctg tgggggacgc ccttcgacga cctctccacc ttccccgacg
     2101 gcgcgcgcgc ccgcgacttc gtgcgccact gcgacgcgac cttcatcccc gaggcccgca
     2161 aggtcttcgc caactcgcgc accgtcgccg agcggctcct caagtacaac cgcattgaga
     2221 gcgagccgct ctaccacccg ccgccgcgcg ccgaacgcct gagggcgggc gagcagggcg
     2281 actacgtctt ctacccgagc cggcttgagc cgcagaagcg gcaggagctt ctcatcgagg
     2341 ccatgagcca cacccgcacg ccggtccgcg ccgtcatcgc gggcggctcg cgcgagcgcg
     2401 ggcgctacga ggcgctcgtc aagcggcacg gcgtcggcga ccgcgtggag ctgcgcggct
     2461 tcgtcgggga gggtgagctg gtcgagcttt acgcgaacgc gctcggcgtc tgctacctgc
     2521 cgttcgatga ggactacggc tacgtgactc tggaagcgat gctgtcgtct aagcccgtcg
     2581 tcgtcgcacg cgacggcggc ggcgcggccg agatggtaga gcac
//
LOCUS       DASPKR010000216         2764 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1579431, whole genome shotgun sequence.
ACCESSION   DASPKR010000216 DASPKR010000000
VERSION     DASPKR010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2764)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2764
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1579431"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(114..1016)
                     /locus_tag="VD968_05945"
     CDS             complement(114..1016)
                     /locus_tag="VD968_05945"
                     /inference="COORDINATES: protein motif:HMM:TIGR00196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HYE13964.1"
                     /translation="MRPTLITRKALSRMPLPRHEEGGDKEARGRVLVVGGGRETPGAV
                     ILAATAALRAGAGKLQIATGEGNAPLVAASIPEARVFALPETKSGGLAKSAGAKLAGH
                     VAEAQAVCVGPGMIEAESVARFVRATLEFCGEVPVVLDAGALACLEGGGELLHALGGR
                     VVVTPNTDELAEVFGEDKELIKREPLRAALRAAREFRAVVALKGRETFIVSPDGRAYL
                     NRAGSGGLATSGSGDVLAGVIAGLIARGAEPLTAAAWGVHAHALAGEALERRVGRLGF
                     LARELLPEIPRALSRLGAGKKSLD"
     gene            complement(1024..2049)
                     /locus_tag="VD968_05950"
     CDS             complement(1024..2049)
                     /locus_tag="VD968_05950"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYE13965.1"
                     /translation="MKGRDREALIVAAAGAGALLAARALVRRAREYDLRGKTVLITGG
                     SRGLGLVLAHELAREGAQIALCARDGAELERARADLESRGARAFAFPCDVTDRAQVRE
                     LVDVVTRHFGGVDVLVNNAGVIQVGPLEVMTLEDFEQAMAIHFWGPLNTTLAVLPQMR
                     ARRDGRIVNISSIGGKVAVPHLVPYCASKFALAGLSDGLRAELAKDNVVVTTVFPGLM
                     RTGSPRNATFKGQHRAEYAWFAISDALPVTSIQAERAARQIITACKRGQAELVITTQA
                     VVAVKFRALFPEAAADMLALANRLLPGPGGIGRKRAKGKDSESALAPSLLTALSDKAA
                     VRNNETK"
     gene            complement(2073..2321)
                     /locus_tag="VD968_05955"
     CDS             complement(2073..2321)
                     /locus_tag="VD968_05955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13966.1"
                     /translation="MLYNEGENVLTGWGPLLLPTVFVVLFNLLQRAVPTPTAVGLAAL
                     APVLIAYFLFPRMRIRPRRVAPAVLLAVGVAVLMGALL"
     gene            complement(2359..>2764)
                     /locus_tag="VD968_05960"
     CDS             complement(2359..>2764)
                     /locus_tag="VD968_05960"
                     /inference="COORDINATES: protein motif:HMM:TIGR00633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HYE13967.1"
                     /translation="GWLKHLREVLDEEFWADDEVLLCGDFNVAPEERDVHDPALWRGR
                     ILFSGPEREALAGVKEWGFTDAFRLHTKGGGHYSWWDYRAGSLQRNAGLRIDHIWVSE
                     PLAARCARAWIDREPRGWERPSDHTPVLAEFR"
BASE COUNT          417 a          998 c          933 g          416 t
ORIGIN      
        1 ttcgagtctc cttgggggct gaggtcggaa agggcctgcg aggtgcgtga agaagcgggt
       61 cacgcgctgg gtcgcgtcgt cgggccggga gaatttaaac catcgggggc ggtttagtcg
      121 agacttttct tgccggcccc gaggcgggac agggctcgcg gtatctcggg cagaagctcg
      181 cgcgcgagga agcctagccg gccgaccctt cgctcgagtg cctcacccgc gagggcgtgc
      241 gcgtggacgc cccacgcagc agccgtgagc ggctcggccc cgcgcgcgat gaggccggcg
      301 atgacgcccg cgagcacatc gcccgagccg gacgtggcga gcccgccgct gcctgcgcgg
      361 ttcaagtatg cgcggccatc gggcgagacg atgaaagtct cgcgcccttt gagcgcgaca
      421 accgcgcgga actcccgagc cgcgcggagc gccgcgcgga gcggctcccg ctttatcaat
      481 tccttgtctt cgccgaagac ttcggccagc tcgtccgtgt tcggcgtgac gacgacgcgg
      541 ccgccgagcg cgtgcagcag ctcccctcct ccctcgaggc acgcgagcgc gccggcgtcg
      601 agcacgaccg gcacctcgcc gcaaaattcg agcgtcgccc tgacgaagcg cgcgaccgac
      661 tcggcctcta tcatccccgg cccgacgcag accgcctgcg cctcggcgac gtgcccggcc
      721 agcttcgcgc ccgcagactt cgccagcccg cccgacttcg tctcgggcag cgcgaagacc
      781 ctcgcctcgg ggatgctcgc ggcgacgagc ggggcgttgc cctcgcccgt ggcgatctgc
      841 aacttccccg ccccggcgcg gagcgccgcc gtcgcagcga gtatcacggc gcccggcgtc
      901 tcgcgcccgc cgccgacgac gagcacgcgc ccgcgcgcct ccttgtcgcc gccctcctcg
      961 tggcgcggca gaggcatgcg gctgagggcc ttccgcgtga tgagagtcgg cctcatcgcc
     1021 gactcacttc gtctcgttgt tgcgaacggc cgccttgtcg ctgagggccg tgaggagcga
     1081 aggggcgagc gccgactcgc tgtccttccc cttcgcgcgc ttgcggccta tgccgccggg
     1141 gccgggcagc aggcggttgg cgagcgcgag catgtcggca gccgcctccg ggaagagcgc
     1201 ccggaacttt acggcgacga cggcctgcgt ggtgatgaca agctcggcct gcccgcgctt
     1261 gcaggccgtg attatctgtc gggcggcgcg ctcggcctgt atggacgtga cgggcagcgc
     1321 gtcgcttatc gcgaaccagg cgtactcggc gcggtgctgc cccttgaagg tcgcgttgcg
     1381 cgggctgccc gttcgcatga ggccggggaa gacggtcgtc actacgacgt tgtccttcgc
     1441 tagctcggcc ctgagcccgt cggagaggcc cgcgagcgcg aacttgctcg cgcagtacgg
     1501 gacaaggtgc ggcactgcaa ctttgccgcc gattgaagag atgttgacga tgcggccgtc
     1561 gcggcgtgct cgcatctgcg gcaggacggc gagcgtcgtg ttgagcggcc cccagaagtg
     1621 gatcgccatc gcctgctcga agtcctctag cgtcatcacc tcgagcggcc cgacctgaat
     1681 caccccggcg ttgttgacga gcacgtcaac gcccccgaaa tggcgagtca ccacgtcaac
     1741 cagttccctg acctgcgcgc ggtctgtcac gtcgcacggg aaggcgaagg cgcgcgcgcc
     1801 gcgcgattcc agatcggcgc gggcgcgctc aagttccgcc ccgtcgcggg cgcagagcgc
     1861 gatttgcgct ccctctcgcg cgagctcgtg cgccagcacg agccccaggc cccgcgagcc
     1921 gcccgttatg agcacggtct tgcctcgcag gtcgtactcg cgcgcgcgcc gcaccaaagc
     1981 cctcgccgcc agcagtgcgc ccgcgccggc cgcggccacg attaaagcct ctctgtcacg
     2041 ccccttcata acgaaagcct ccccgacatt ttttacagca gcgcccccat caggacggcg
     2101 acgccgacgg cgagcagcac ggccggcgcg accctgcgcg gccgtatgcg catgcgagga
     2161 aagagaaagt aggcgatgag cacgggcgcc agcgcggcga gcccgacggc cgtcggcgtc
     2221 ggcacagccc gttgcagcaa attgaaaagc actacgaaaa cggtgggcag aagcagcggc
     2281 ccccagcccg tcaaaacgtt ctcgccctcg ttgtaaagca tcgcatttcc cctcccccct
     2341 cggttcgctg aactactctc acctgaactc ggccagcacc ggcgtgtgat ctgacgggcg
     2401 ctcccagccg cgcggctccc tgtcaatcca cgcgcgggcg catcgcgcgg cgagcggctc
     2461 cgagacccat atgtggtcaa tgcggaggcc agcgttgcgc tgcaaggagc ccgcgcggta
     2521 gtcccaccag gagtaatgcc ccccgccctt agtgtgcagg cggaaggcgt cggtgaagcc
     2581 ccactccttg acgcccgcga gggcctcgcg ctcggggccg ctgaagagta tccgcccgcg
     2641 ccagagcgcg gggtcgtgaa cgtcacgctc ctcgggtgcg acgttgaagt cgccgcacag
     2701 gaggacttcg tcgtcggccc agaactcctc gtcgaggact tcgcgcaggt gcttgagcca
     2761 ccct
//
LOCUS       DASPKR010000217         9022 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1452199, whole genome shotgun sequence.
ACCESSION   DASPKR010000217 DASPKR010000000
VERSION     DASPKR010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9022)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9022
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1452199"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1104
                     /locus_tag="VD968_05965"
     CDS             <1..1104
                     /locus_tag="VD968_05965"
                     /inference="COORDINATES: protein motif:HMM:NF012447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid lyase"
                     /protein_id="HYE13968.1"
                     /translation="IPEKGSVGASGDLAPLAHLALCCMGEGEAVHEGRRVPGAEALDR
                     AGIEPLTLEAKEGLALLNGTQALTAVGALALERAIGAVRAADVSGAMALEALKGTPAA
                     FDERIHAARPHRGQRQVAARLRELLRDSEIRASHAENDPRVQDAYSLRCMPQVHGAAL
                     DALEHARSVIETETGSATDNPLVFAAEGDVVSGGNFHGAPCALALDYAAVALTHLGNI
                     VERRIDRLVNPDKNEGLPPFLTARAGVESGYMVAQIVAVALLNECKVLAHPASTDNLP
                     TDGGKEDHVSMGMTAATKLRRVVENIETVVAIELLAAAEGLEHRAPLRPGVGVRRAYD
                     TVRSHAPRLTRDRALSADFDEITRALRRGEFDL"
     gene            1260..1649
                     /locus_tag="VD968_05970"
     CDS             1260..1649
                     /locus_tag="VD968_05970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13969.1"
                     /translation="MDSTTDDRGASAPGEGAEGAETRAEETGGSMTGAADATAVNVEW
                     AERAGVVTPKEDDYSRGDYHAPCASYAPSDSYSYNYSALASPNTTDPPATDSYICPRG
                     DERWERLHIGQPIPRCSRHGLTLIPVE"
     gene            1664..2653
                     /locus_tag="VD968_05975"
     CDS             1664..2653
                     /locus_tag="VD968_05975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13970.1"
                     /translation="MGNFLEALGGQLADRRAVSLLVPAVLFWGGGLGAYLSCSQWALL
                     CSPKWAVLCSPDSCSRWPHLRRWLAELSTPEQWALLLVGLLFVLTSAVVAERMVMPTL
                     RLLEGYWPGWLNFLQRRLVNAQSRRAEREQKRLAELAAEQRSTPGGLPTREKQAEYAS
                     LEFRLLRAPSIDRFRMPTELGNILRVAEMRPQEKYGLNSIVCWPRLWLLLPDGVKQEL
                     GEARSGLDAAVRSWLWSLLFLVWVIWAWWAVLVGLLGALFSYRWAVAAAAAYGDLLES
                     AYDLHRWTLYAALRWPAPRTPADEKAIGEAVTKYLRRGSDRAAPVFVNHGQAP"
     gene            complement(2672..4057)
                     /locus_tag="VD968_05980"
     CDS             complement(2672..4057)
                     /locus_tag="VD968_05980"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYE13971.1"
                     /translation="MKRFSFAPCALAAAALLCAAAACAPAPTATNTAGNMAATNSATA
                     GAQPTASPSTTAAASESQLPVTLPVLDAMFHEEAFAGELKSRLQLTDEQVERLRKIAG
                     EETAGLQEGDGDDSGRSTAEAARRASEKVREVVGAEKAQAFSAFVRERWAAGGGALAS
                     KPNAVPTDTRIVVNAPAYRMDVFESGRLVKTYKVGIGYPEFPLPQGLRKAETIIFNPT
                     WTPPDEPWVKGKVQPGKKVEAGSSLNPLGPVKIPIGQPSLIHGGKSPARLGTFASHGC
                     VGLTNAQVQDFSVVLAGLGGAQLTPEDVQGFAKKKTETKNVRLASPVPVELRYETIVV
                     EDGRLIIYRDVYDKGTNTEENLRRVLEAHGARLEDFTEQERAQVLEALKAMARDAHGN
                     PADGQATPTPTPGKKGKVRETRAVKGQKEVVIEVAALTGKGYPAPVNLDTGTGKPAQP
                     KATPAPKKQPA"
     gene            complement(4225..4947)
                     /locus_tag="VD968_05985"
     CDS             complement(4225..4947)
                     /locus_tag="VD968_05985"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HYE13972.1"
                     /translation="MALGPRARVLLIAGLLLAALGALVWYLTANYSTRPVTPIEPPRP
                     GAPSDVPSPTETPTPEPTPEPTPQASPMGSPPESPEPTPYASPRPTPPPPISSASPPR
                     LLIPVAGVKPEQLRDTYTDSRSEGRPHNAIDIEAPRGTPVLAAADGRILRLFKSVKGG
                     LTVYQLGTDERTVFYYAHLDRYADGLAEGNFARRGDTIAYVGDTGNATPGNYHLHFQV
                     YSVKDPKHFWDGENLNPYTLLK"
     gene            5242..5562
                     /locus_tag="VD968_05990"
     CDS             5242..5562
                     /locus_tag="VD968_05990"
                     /inference="COORDINATES: protein motif:HMM:NF024845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HYE13973.1"
                     /translation="MTDILDERRRGLEEEYFRRKDKESLDKLRSALAEEARARGEDVA
                     TMPCPRCDGRLHELIYDEVRIDRCNRCGGVWLDTGELEQIIAQESTPGRWLKAFWPGR
                     ADEK"
     gene            complement(7001..7771)
                     /locus_tag="VD968_05995"
     CDS             complement(7001..7771)
                     /locus_tag="VD968_05995"
                     /inference="COORDINATES: protein motif:HMM:NF012876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HYE13974.1"
                     /translation="MINTVRGRLTLWYVSVLALILVAFVVAVYVMLSRALHRRVDEAL
                     RSTLDITTTSLTNDAEEGQSPESAAQSTAAELSHPQQALMIFDGEGRLLAEHPYEEDL
                     EVRLPDLAAIPDEGVYLYTVAEESDADDEHRLAVRRVRIAPAGTPYIILASQPLEAIE
                     DELESLREVLYLAMPGTLLLAGLGGWFLARRGLAPVAAMARTARRIGAGNLDRQLPVV
                     NPRDELGQLATTFNELLARLNAAFAQQRQFMADASHGM"
     gene            complement(7764..8453)
                     /locus_tag="VD968_06000"
     CDS             complement(7764..8453)
                     /locus_tag="VD968_06000"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYE13975.1"
                     /translation="MRILLVEDEPDAARLLAKGLREEAYAVDLAADGEKALEQAATND
                     YDLVILDVMLPRKNGFEVCRELRASGSAVPVLMLTARDAVGDRVAGLDSGADDYLPKP
                     FDFDELLARVRALLRRRPALYPEVITVADLSIDTRARRVTRGGEEVALTAKEYALLEY
                     LARRAGEVVGRADIAEHVWDETYDPFSKVIEVFIQRLRRKVDEGRDPKLIHTRRGEGY
                     TLAARGAAEDD"
     gene            8622..>9022
                     /locus_tag="VD968_06005"
     CDS             8622..>9022
                     /locus_tag="VD968_06005"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF012585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HYE13976.1"
                     /translation="MSTKKVLAIIVGGGPAPGINAVISAAAIEAINEGFEVLGVQDGF
                     KHLIREDASKVRPLRIEDVSRIHLDGGSVLGTARDNPTKSERATRSVVETLRSLGVTH
                     LVTIGGDDTALSSSFVAERSGHHIRVVHVPKT"
BASE COUNT         1358 a         3087 c         3191 g         1386 t
ORIGIN      
        1 ataccggaga agggctcggt cggcgcgagc ggcgaccttg cgccgctcgc ccacctcgcg
       61 ctctgctgca tgggcgaggg cgaggccgtc cacgaaggcc gcagggtgcc gggcgccgag
      121 gccctggacc gcgcgggcat cgagcccctg acgctcgaag cgaaggaggg cctggcactc
      181 ctgaacggga cgcaggcgct cacggcagtc ggcgcgctcg cactcgagcg cgcgataggg
      241 gccgtgcgcg ccgccgacgt ttcgggcgcg atggcgctcg aagccttgaa ggggactccc
      301 gccgccttcg acgagcgcat acacgcggcg cgcccgcaca gggggcagcg acaggtcgcg
      361 gcgcggctgc gcgagctttt gcgcgacagc gagatacgcg cctcgcacgc ggagaacgac
      421 ccgcgcgtgc aggacgcgta ctcgctgcgc tgcatgccgc aggttcacgg cgccgcgctc
      481 gacgcgctcg agcacgcgcg ctcagtcatc gagaccgaga cgggcagcgc caccgataac
      541 ccgctcgtct tcgccgccga aggcgacgtg gtctcgggcg ggaacttcca cggcgccccc
      601 tgcgcgctcg ccttagacta cgcggccgtc gcgctcacgc acctcggcaa catcgtcgag
      661 cgcaggattg accggctggt gaacccggac aagaacgaag ggctgccgcc cttcctgacg
      721 gcgcgcgcgg gcgtggagtc cggctacatg gtcgcgcaga ttgtggcggt cgcgctgctg
      781 aacgagtgca aggttctggc ccacccggcc tcgaccgaca acctgccgac cgacggcggc
      841 aaggaggatc acgtctcgat gggcatgacg gcggcgacga aactccgccg cgtcgtcgag
      901 aacatcgaga ccgtcgtcgc catcgagctg ctcgcggcgg ccgaggggct cgagcaccga
      961 gcccccctgc gccccggcgt cggcgtccgc cgcgcctacg acaccgtccg ctcacatgcc
     1021 ccgcgcctca cgcgcgaccg agccctctcc gccgacttcg acgaaatcac acgggcgctg
     1081 cgccgcggcg agttcgacct gtaaaaacag tggaaaagta gagccgccgg tcatatactg
     1141 cgccgcgcac gcccagggcg tgcctgaccg ggccgcctcg ccgatgccgc ccgtgcggcg
     1201 caagcaatcc gccgcctcat cctcgcgcgg caggttcctc aaagctaagg agcaacaaaa
     1261 tggattcaac gaccgacgac cgcggcgcga gcgcgccggg cgaaggcgcc gaaggcgccg
     1321 agacacgcgc ggaagagacg ggcggctcga tgacgggcgc ggcagacgcc acggccgtca
     1381 acgtcgagtg ggccgagcgg gcgggagttg ttactccgaa ggaggacgac tactccaggg
     1441 gagactatca cgcgccgtgc gcctcgtatg cgccgagcga ctcgtacagc tataactatt
     1501 ccgcgctggc gagccccaac acgaccgacc cgccggcgac tgacagctac atctgcccgc
     1561 gtggggatga gcgttgggag cggctgcaca taggccagcc catccccaga tgctcgcggc
     1621 acggcctcac gctcatcccc gttgagtaag acggcgcggc cggatgggta actttctcga
     1681 agcgctcggc ggccagttgg cggatcggag ggccgtctcg ctgctcgtcc ccgcggtgct
     1741 gttctggggc ggagggctgg gcgcttacct ctcgtgcagc cagtgggcgc tgctctgttc
     1801 gccgaagtgg gccgtgctct gctcgcccga ctcgtgctcg cgctggcctc acctccgccg
     1861 gtggctcgcc gagctttcga cgcctgagca gtgggcgctg ctgctagtcg ggcttctctt
     1921 cgtcctcacg tcggcggtgg tcgccgagcg catggtcatg ccgaccctgc gactgctcga
     1981 aggttactgg cccggctggc tcaacttcct ccagcgccgg ctggtgaacg cgcagtcgag
     2041 gcgcgcggag cgcgagcaga agcggctggc ggaactcgcg gccgagcagc gctccacgcc
     2101 gggcggcctg cccacgaggg agaaacaggc cgagtacgcg tcgcttgagt tcaggctgct
     2161 gcgcgccccc tcaatagacc gcttccgcat gccgaccgag ctgggcaaca tcctccgcgt
     2221 cgcggagatg aggccgcagg agaagtacgg cctcaactca atcgtctgct ggccgcgcct
     2281 gtggctgctg ctgcccgacg gcgtgaagca ggagctgggc gaggcccgct ccgggctcga
     2341 cgcggcggtg cggtcgtggc tgtggtcgct tctcttcctc gtgtgggtga tatgggcgtg
     2401 gtgggccgtc ctcgtgggcc ttctcggcgc gctcttctcc taccgctggg ccgttgcggc
     2461 ggccgccgca tacggagacc tcctcgaatc cgcatacgac ctgcaccgct ggacgctcta
     2521 cgcggccctg cgctggccgg cgccgcgaac ccccgcggat gagaaggcca taggcgaggc
     2581 cgtaacgaag tacctgcgca ggggctcaga ccgcgcggcg cccgtcttcg tcaaccacgg
     2641 ccaagcgccc tgaccggctg ccctccccgc gtcacgcggg ctgcttcttc ggcgcgggcg
     2701 tggctttggg ctgcgcgggc ttgcccgtgc ccgtgtcgag gttgacgggc gcggggtagc
     2761 ctttgcccgt gagcgccgcc acttctatca ccacttcctt ctggcccttg acggcgcgcg
     2821 tctcgcgcac cttccccttc ttgccgggcg tgggcgtcgg ggtggcctgg ccgtcggccg
     2881 ggttgccgtg cgcgtcgcgg gccatcgcct tcaaagcctc caacacttgc gcgcgctcct
     2941 gctcggtaaa atcttcgagc cgcgcgccgt gagcttcgag cacgcggcgc agattctcct
     3001 ccgtgttagt ccccttgtcg taaacgtcac ggtagatgat gagccggccg tcctcgacga
     3061 cgatggtctc gtagcgaagc tctacgggga cgggcgaggc gagacggacg ttcttcgtct
     3121 cggtcttctt cttcgcgaag ccctgcacgt cctcgggcgt gagctgcgcg ccgcccaggc
     3181 cggcgagcac gacggagaag tcctgcacct gcgcgttcgt caggccgacg cagccgtgcg
     3241 aggcgaaggt gccgagccgc gccggcgact tgccgccgtg tatgagcgac ggctggccga
     3301 tggggatttt gacggggccg agcgggttga ggctgctgcc ggcttcgacc ttcttgccgg
     3361 gctgcacctt gcctttgacc cacggctcgt cgggcggcgt ccacgtcggg ttaaagatga
     3421 tggtctcggc cttgcgcaag ccctgcggca gcgggaactc cgggtagccg atgcctacct
     3481 tgtaggtctt gacgagccgg ccgctctcga aaacgtccat gcggtaggcc ggggcgttga
     3541 cgacgatgcg cgtgtccgta ggcacggcgt tcggcttcga cgcgagcgcg ccgccgcccg
     3601 cggcccatcg ctcgcgcacg aaggccgaga acgcctgcgc cttctccgcg cccacgactt
     3661 ccctgacctt ctcggaggcg cggcgcgcgg cctcggccgt cgagcgcccg gagtcgtcgc
     3721 catcgccctc ctgcaagcct gcggtctcct ccccggctat cttccgaagg cgctcgacct
     3781 gctcgtccgt tagttgcagg cgcgacttca gctcgcccgc gaacgcctct tcgtggaaca
     3841 tcgcgtcgag gacgggcagc gtcacgggca actgcgactc actcgccgcc gccgtcgttg
     3901 aaggcgaggc agttggctgc gctccggccg ttgcggagtt agtcgcggcc atgttgcccg
     3961 cggtgttcgt tgcggtcggg gccggcgcgc aggcggccgc ggcgcagagc agcgcggccg
     4021 cggcgagcgc gcacggcgcg aacgaaaatc tcttcatcta atcttgtcgc tccttaattt
     4081 cggcttacgg gagagtaaag gcaaagcctc gctccccgcc ccgtggcaac taccgttccc
     4141 gccccgtttt tcccacaacg cgcgcgcacg ccgcccacgc ccgccgcacc ataagcggac
     4201 gcaggacgta gcaacaatgg tcagttattt cagaagcgtg taggggttca ggttctcgcc
     4261 gtcccagaag tgtttggggt ctttgacgga atagacctgg aagtgcaggt ggtagttgcc
     4321 gggcgtggcg ttgcccgtat cgccgacgta ggcgatggtg tcgccgcggc gcgcgaaatt
     4381 gccctcggcg aggccgtcgg cgtagcggtc gaggtgcgcg tagtaaaaga ccgtgcgctc
     4441 gtcggtgccg agctgataga cggtgagccc gcccttcacg ctcttgaaga ggcggagtat
     4501 gcggccgtct gcggcggcga ggacgggagt gccgcgcggc gcctctatgt caatggcgtt
     4561 gtgggggcgg ccctcagagc gcgagtcagt gtaggtgtcg cgtaactgct ccggcttcac
     4621 gccggcgacc gggatgagga gacgcggcgg ggaggcggag gagataggcg ggggcggcgt
     4681 cggccgaggg ctcgcgtagg gcgtcggctc gggcgactcc ggcggcgagc ccataggcga
     4741 ggcttgcggc gtcggctcgg gcgtgggctc aggggtcggc gtctcggtcg gagagggaac
     4801 gtccgaaggc gcccccgggc gcggaggctc tatcggcgtg acgggccgcg tcgagtagtt
     4861 agccgtcaag taccagacga gcgcgcccag cgccgccagc agcaggccgg ctatcagcag
     4921 cacgcgcgct ctagggccga gtgccatcac ctctccttcg ctccgtgcgg tttcgcgccc
     4981 tcggcccaaa gcatatcaga ttagccacag aggcacagag gaaggaaaga aggcagaaag
     5041 cagaaggcag ccggcgctaa cttcatcggt tgccttctgt cttctcctcc gtacccctgt
     5101 ggctaatact tcttcggtcg cggggtggcg ctcgcacgcg gttttctgat attagatatg
     5161 gcgttaacga cacacgcacg ccggagccgc acgcgccacg cgcgtcgcgc tcgcgccaca
     5221 ccgcgaggag gagcaacgag agtgacggac attctggacg agcgccggag gggcctcgag
     5281 gaggaatact tcaggcgcaa ggataaggag tctctcgaca agctgcgctc ggcgctggcc
     5341 gaggaggcgc gcgcgcgcgg cgaggacgtg gcgaccatgc cgtgcccgcg ctgtgacggg
     5401 cgcctgcacg agctcatcta cgacgaggtt cgcatagacc gctgcaacag gtgcggcggc
     5461 gtgtggctcg acacgggcga gctggagcag ataatcgccc aggagagtac ccccggccgc
     5521 tggctcaaag ccttctggcc cggcagggcg gatgagaagt aggcagaagg cagaaagcag
     5581 aaggcggccg gccccgcgcg gcgacggccg gcgctttcac cccgacggca aggaagaaag
     5641 gttttaactg ccgtccgcct tctgctttct gccttccgag gtttcttatg aggagagcgt
     5701 tcgcgatcct gtgcagcctt gcgctggcgg cttcggccgc gctcccgcag aagcagacgc
     5761 ccgcgcccga ggacacgccc gcgcccgtgc cgggcgacct ggggctcgcg ggcgcgccct
     5821 gccccgacat cgcgcgctac ctcaacgtgc gcgccgccgg ggccccttcg ctctcgccgg
     5881 acggccggcg cgtggccttc cgctcgagca cgacgggcca tccgcaaatc tgggtcgccg
     5941 acgcgcgaga aggcgccgcc ccccgccaga taaccttcgg cgagcccgtc accttccacg
     6001 agtggtcgcc cgcgggcgag tggatagcct acggcgttga ccgcggcggc aacgagcgcg
     6061 agggcttcta cctcatctcg cccgacggca cgagcgagca ggagcttctg cctccctcgg
     6121 aagtcttccg acagtggggc ggcttctcgc gcgacggcaa gctcgtagcc ttcgccgcga
     6181 ccgagccggg cggcgacgac ttccacatct acacgctcaa cctttcggcg cgcccgctgg
     6241 agcccctcaa ggtctatgcc ggccgcggcg gcacatacgt cgcggcgtgg cggcccgacg
     6301 ggttgggcct gatcttgacg aagacgcgcg gcgaagactc gaacgacgtg ctccacttag
     6361 acctgggcgg cgacaaagtg gagacgctgt tcgcgccaaa ggaaggcgcg cgctacgact
     6421 ctttctcgtg ggcgcccgac ggctccggct tctacatggc ttcggacgag gggcgcgact
     6481 tcgccggcct cgccttctac gacatgcgct cgcgcaagct ctcctggatc gagacgcccg
     6541 cgcgcgacgt tgagaccgtt gcgctctctc acgacggtcg ttatctcgcg tgggccgaga
     6601 acgacggcgg cttctccgag ttgcgggtgc gcgacctcaa gacgaaccgc accacgacgc
     6661 ccacgccgat gacgacacga ggcactacca ccgacgccgt gcgcggcgta gtcaactcgc
     6721 tggtttgggc ggagcgcgcg aacgtgctcg cgatgcagtt gagcggcccc gaagtccccg
     6781 gcgacgtgtg ggtgttcgac cccgcgcggg ctaccgaggc gcgcgtcgcg cctaagagcg
     6841 cgccgccgtc cgcaccgcgg agcgcgccag cggtcatgcc gccgggcggg gtaacgcgtg
     6901 tcacggagtc atcgctcgcc gggctagacc cgcggacgtt cgtgacgccc gaggccgtgt
     6961 cgttcaagag ccacgacggc gagacgattt acggcctgct ctacatgccg tgcgaggcgt
     7021 cggccatgaa ctgtcgctgc tgggcgaagg cggcgttaag gcgcgcgagc agctcgttga
     7081 aggtggtggc gagctggccc agttcgtcgc gcgggttgac gaccgggagc tgtcggtcga
     7141 ggttcccggc gccgatgcgg cgcgcggtgc gggccatcgc ggcgacgggc gccaggccgc
     7201 ggcgcgcgag gaaccagccg ccgagcccgg ccaggaggag ggtgccgggc atcgccaggt
     7261 agagcacctc gcgcagcgac tccagctcgt cttcgatggc ttcgagcggc tggctggcga
     7321 ggatgatgta gggcgtgccg gccggggcga tgcgcacgcg gcgcacggcg aggcggtgct
     7381 cgtcgtcggc gtccgactcc tcggcgaccg tgtagaggta gacgccttcg tcggggatgg
     7441 cggcgaggtc ggggaggcgg acttcgaggt cttcctcgta ggggtgctcg gcgagcaggc
     7501 gcccctcgcc gtcgaagatc atcagggcct gctgcgggtg ggagagctcg gcggccgtgc
     7561 tctgcgcggc gctctcgggc gactgcccct cctcggcgtc gttcgtcagc gaggtggtgg
     7621 tgatgtcgag ggtcgagcgc agggcctcgt ccacgcgccg gtggagtgcg cgcgagagca
     7681 tcacgtagac ggcgacgacg aaggcgacga ggatgagcgc gagcacgctc acgtaccaga
     7741 gcgtgagccg gcccctgacg gtgttaatca tcttcggcgg ccccgcgcgc ggcgagcgta
     7801 tagccctcgc cgcgccgcgt gtgaatgagc ttggggtcgc gaccctcgtc aaccttccgg
     7861 cgcaggcgct ggatgaagac ctcgatgacc ttggagaagg ggtcgtaggt ctcgtcccag
     7921 acgtgctcgg cgatgtcggc gcggcccacc acctcgccgg cccgccgcgc gaggtattcg
     7981 agcagggcgt actccttggc ggtgagcgcg acctcctcgc cgccgcgcgt gacgcgccgc
     8041 gcgcgcgtgt caatcgagag gtcagcgacg gtgatgactt ccgggtagag ggcgggccgg
     8101 cgccggagca gggcgcggac gcgcgcgagc agctcgtcga agtcgaaggg cttcggcagg
     8161 tagtcgtcgg ccccggagtc gaggccggcc acgcggtcgc cgacggcgtc gcgcgccgtg
     8221 agcatcagca cgggcacggc cgagcccgag gcgcgcagct cgcggcagac ctcgaagccg
     8281 ttcttgcgcg gcagcatcac gtcgaggatg acgaggtcgt agtcgttcgt cgcggcctgc
     8341 tccagggcct tctcgccgtc ggcggcgagg tcaacggcgt aagcctcctc gcgcaagccc
     8401 ttggcgagca gccgcgccgc gtccggctcg tcctcgacca gcagaatccg cacacccaaa
     8461 aacccccgcc cgtgagaatg tccgacggcg cgctaagcat agcagaacgc cgccgggcgg
     8521 cgcccgccaa tcaataaatt cgttgcggct aacgctcgcg cccccgtttt ggttacaatc
     8581 cgccgcaagc tcaacagcag accgggacgg gcgcaggatt catgtctacg aagaaggtgc
     8641 tggcgatcat cgtcggcggg gggccggccc ccggcatcaa cgcggtcatc tcggccgccg
     8701 ccatcgaggc catcaacgag ggcttcgagg tgctcggcgt gcaggacggc ttcaagcacc
     8761 tcatccgcga ggacgcgtcg aaggtgcggc ccttgcggat cgaggacgtg tcgcgcatcc
     8821 acctcgacgg cggctccgtg ctcggcacgg cgcgcgacaa cccgaccaag tccgagcggg
     8881 cgacgcgctc ggtcgtcgag accctgcgct ctttaggcgt cacgcacctc gtcaccatcg
     8941 gcggcgacga cacggcgctc tcctcctcct tcgtcgccga gcgcagcggc caccacatcc
     9001 gcgtcgtcca cgtccccaag ac
//
LOCUS       DASPKR010000218         9325 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1708383, whole genome shotgun sequence.
ACCESSION   DASPKR010000218 DASPKR010000000
VERSION     DASPKR010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9325)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9325
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1708383"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..648
                     /locus_tag="VD968_06010"
     CDS             <1..648
                     /locus_tag="VD968_06010"
                     /inference="COORDINATES: protein motif:HMM:NF042831.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6766 family protein"
                     /protein_id="HYE13977.1"
                     /translation="NGLSIAMLALFFFSLAGQAVTGMHEYNEDQREHGQAPASGLAEY
                     LVTGHFVEATFENWESEFLQMAAYVMLTAFLYQRGSSESKDPDKEEEVDRDPRESRKD
                     PKAPGPVRAGGLALKLYENSLFIAFALLFVLSFLLHAAGGAREYSSDQVEHGQPPVTF
                     WQYLATSRFWFESFQNWQSEFLSVASIVLLSIWLRQKGSPESKPVAAPHSQTGGG"
     gene            838..1212
                     /locus_tag="VD968_06015"
     CDS             838..1212
                     /locus_tag="VD968_06015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13978.1"
                     /translation="MTKKLTCLFAFCLTLGLLLVACGGGADSNAGNSTANTGKAGSTA
                     SSGDKIGVAECDEYIAKYEACVNSKVPEAMRASVKASLDTARKMWKDAAATPQGRAGL
                     AQACKTALEQTKQQLGSYGCTW"
     gene            complement(1292..3061)
                     /locus_tag="VD968_06020"
     CDS             complement(1292..3061)
                     /locus_tag="VD968_06020"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HYE13979.1"
                     /translation="MKKRISTALATLFLLALLLPAFVIAQQSGSQPPPPPARRGEPGR
                     AGGDTPAPTSRARRPARVEATEGVEADLAEALTVIQDNHVDGNKLDYNGVFKSSIIGM
                     LRSLDPHSNFYDAKEFEEQRADWRSEYYGIGATIGDRKIGETADTYILSTFPGTPAYK
                     AGLRFGDRIVEVDGQSVKGKPSSDVRDRLRGPRGTTVRVTVERASDGRRDTVEITRDA
                     VSQPTVPDYYFIKPGVGYIDMTRGFNYTTAEEFAEALEKLKAQGLQGLVLDLRGNGGG
                     ILDQAKMVAERFLANGQTILTQKGRGARGAERRYESENRNPDMTPLVVLVNRGTASAS
                     EIVAGALQDHDRALIIGETSFGKGLVQSIMPLEYGTALTLTTSKYYTPSGRLIQRDYS
                     NTGFYDYIYRGGIGAQDDPSSQTTTAPKGQESKTDTGRTIYGGGGIAPDEAVKARTLT
                     PQQVRLLDPIFGFARELVNGRVAAYPGYKVKDMPDFERNLQPNDMVVDERVFKAFKEY
                     VAANKETYNVTEAQLDRAKEFITRQLRYDLATAATGTVKATQVLIADDPQVAKAIEVL
                     PRARELAATAQRGRNPQTKSFED"
     gene            complement(3265..5088)
                     /locus_tag="VD968_06025"
     CDS             complement(3265..5088)
                     /locus_tag="VD968_06025"
                     /inference="COORDINATES: protein motif:HMM:NF036516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HYE13980.1"
                     /translation="MKNCVSRAHAFALFVLLLMAAAPPAAAARQGADGPRITYELGMS
                     RPTTRLFEVTMNVSNLSAPRLVVQFPVWVPGAYRVVDTARNVQEFRASSARGQLLPAV
                     RTATNEWTVESAGLSAVRVTYKVFADQIGVTGAHLDDTHAYFNGPLLFAYVVGAKDRP
                     VELTVNKPPRWAAISTGLDPVPGRSNTFSAPDYDTFIDAPFEIGNHQVLTFDHAGARY
                     EIAIYGNHNYDTERFRREHEAIVRSQVNMMGGAPFKRYVFIYHMTPEGGGGLEHLNST
                     VINRRKWRGDTEEGWDSLRGVASHEFFHLWNVKRMRPAVLGPFDYTRQVPTRDLYVSE
                     GMTSYYGDLHLLRAGLWEPKRYLKAVAEEIKTLQNLPGRRILTVEESSMNTWFAHDDS
                     GNASFSYYNKGELLGLLLDLEIRHRTKNARSLDDVFRYLYETYGLPKPGWQPGGFQEA
                     VERVAGSDFDEFFSRYVAGTEELPYERALGYAGLKLERKEEKGLDLGVTFASDIPSDS
                     VGLPVRGVKSDGPAYNVLANGDLLLAVGGERVTEKSLQAQLSRFKPGSTLPLTVFRGD
                     RLLELTMTTPGRAPVSYEITEDPGATTEQKALRQSWWTGKK"
     gene            5326..5763
                     /locus_tag="VD968_06030"
     CDS             5326..5763
                     /locus_tag="VD968_06030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13981.1"
                     /translation="MSTPFDPKDPEVLEPVDDLMLHEDEGGQPHERDRVSSSVRDIAS
                     RIPESLASIGRDISRTVERALSAKDDYVVAVKVSHEAQDKLEQLVQAGVFRNRAEAAA
                     FLIDEGIKAQQALFDRVAQKLAEIERLRAELRGIVNSEGEARG"
     gene            5816..7222
                     /locus_tag="VD968_06035"
     CDS             5816..7222
                     /locus_tag="VD968_06035"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE13982.1"
                     /translation="MSSPTPTLPQVPVEQFTLPNGLRVIMSEDHAVPVVSVAVYYDVG
                     SRNEREGRTGFAHLFEHMMFQGSENVPKAGHFQYVFNNGGTMNGTTSSERTNYFETLP
                     ANQLPLALWLESDRMRSLRVTQENLDNQRDAVKEEKRLTYDNRPYSNAFLRLNELIYR
                     NPANAHSTIGSMEDLDAATIDDVRDFFRVYYAPNNAVLAIVGDFDPGEARSLVEKYFA
                     TIPAQPRPPEADVSEPEEVAAGHELYRDPFAQLPAIMLGWKIPPRRTADFYALSAASD
                     LLLDGDSSRLYQRLVKEEESVVGIQGGIGERRGPSSLYIFAIPKPGHTTEQIRATIQG
                     EIERLASEGPTAEEMEKLRNTLLNDAVRSRQSTLYRAQRLAEYALYDGDPSLLNTEIE
                     RYVAVTPDEIKRAVGRYLLTDNHSVMEVVPSHSAPPEREPAPAEPEGEPDEPGGPPPQ
                     VPPKPPAEPPPPTESHEP"
     gene            7295..8680
                     /locus_tag="VD968_06040"
     CDS             7295..8680
                     /locus_tag="VD968_06040"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE13983.1"
                     /translation="MTQAEEFRRQPPAPLPPRPLNLPEPSETTLANGLRVVVVEQERL
                     PLVSFRLAFPVGDAFDPPGLPGLTDVLSDMLLEGTETRTSRQIAEEVARYGATLSAGA
                     SSDYTTVAASSLSAYAGEILELLADVTLRPSFPENELALAKANAQQNLIAQRAQPSFL
                     ATEALAAVLFGEHPYSVVSATPESIEAVSRESLLAHHRSKFVPEGAVLFVVGDVRREE
                     LIERVERLFGRWSGGPVEGPRFPAPPEPAGRTIYTVDRPGSAQSNIVVANLAITRTHP
                     DYFPFLVMHTILGGTASARLFMNLREEKGYTYGAYSVLDARRYAGSFRATAEVRTPVT
                     GASLREIFYELARIRDREVSEKELADAKSYLTGIFPIRLETQEGLIDQLVQIRMHGLP
                     EDYLRTYRDRVSAVTREDVRRVANLYVTPDSASVVIVGDAREVREQAAPFAGRVVDFG
                     ATTREGAEARG"
     gene            8713..9021
                     /locus_tag="VD968_06045"
     CDS             8713..9021
                     /locus_tag="VD968_06045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13984.1"
                     /translation="MNLVGNWNLEVATPFGKQPATLVFEGTGGALSGRIESRLGNVPL
                     EHLSVTHDSFDAAVSLEFQGRDYEADIDGSVDGDSISGTIKVKLAIAPPIKYTGTRAG
                     "
     gene            complement(9035..>9325)
                     /locus_tag="VD968_06050"
     CDS             complement(9035..>9325)
                     /locus_tag="VD968_06050"
                     /inference="COORDINATES: protein motif:HMM:NF039584.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13985.1"
                     /translation="EHIQSSWLTQGLKLGQVALRFGADDMGSVMIEENVVSAAGAHNT
                     ADEKLLRHLIRAAGFRPQQRDILYRHVNRDESAQKDASGSATLRELSVAIAD"
BASE COUNT         1499 a         3160 c         3114 g         1552 t
ORIGIN      
        1 aacggcctga gcatcgcgat gctggccctc ttcttcttct cgctcgcggg ccaggccgtg
       61 acggggatgc atgagtacaa cgaggatcag cgcgagcacg gccaggcgcc ggcctccggc
      121 ctggccgagt acctcgtaac cggccacttc gtcgaggcga ccttcgagaa ctgggagagc
      181 gagttcctac agatggccgc ctacgtgatg ctcaccgcct tcctctacca gagggggtcg
      241 tccgagtcga aagacccgga caaggaggag gaggttgacc gcgacccgcg cgagtcgcgc
      301 aaagacccga aggcgcccgg ccctgtgcgg gcgggcgggc tcgcgctcaa gctctacgag
      361 aactcgctct tcatcgcctt cgccctactc ttcgtgctct cgttcctcct gcacgctgcg
      421 ggcggcgcgc gcgagtacag cagcgaccag gtggagcacg gccagccgcc cgtcaccttc
      481 tggcagtacc tcgcgacctc gcgcttctgg ttcgagtcgt tccagaactg gcagagcgaa
      541 ttcctctcgg tcgcgtcaat cgtcctgctc tcgatatggc tgcggcagaa gggctcgccc
      601 gagtcgaagc ccgtggcggc gccgcacagc cagaccggcg gcggctgaag cgcggcgcgc
      661 tgaagaaaaa tttttccgcg cccctcactt gacgcgggcc gcgcggcggc ataacttacg
      721 cgtcggcctc gcggctttcc cggccgacgc ccccgcactc cgacgtcgct taggcgcgcg
      781 gcccgcaata ccaccaccac gcggctactt cttcagcaaa ggagactgac gagactaatg
      841 acgaagaaac ttacgtgcct tttcgccttc tgccttaccc tggggctcct gctcgtcgcc
      901 tgcggcggcg gcgccgactc taacgccggc aactcgacgg ccaacacggg caaggccggc
      961 tccaccgcct cgtccggcga caagataggc gtggccgagt gcgacgagta catcgccaag
     1021 tacgaggcgt gcgttaacag caaagtcccc gaggctatgc gcgcgagcgt gaaggcttcg
     1081 ctcgacaccg cgcgcaagat gtggaaggac gccgccgcca cgccgcaggg cagggccggg
     1141 ctggcgcagg cgtgcaagac ggccttggag cagacgaagc agcagctagg ctcctacggc
     1201 tgcacctggt agcggggctg cgaagaaaga cgaaagaggc ccggcgagcc taacactcgc
     1261 cgggcctctt tacgttcgcg ctcgcgcgcg cttagtcctc gaacgacttg gtctgcgggt
     1321 tgcggccgcg ctgggccgtg gccgctagct ccctggcgcg cggtagcacc tcgattgcct
     1381 tagctacctg cgggtcgtcg gcgatgagaa cctgcgtcgc cttgacggtg ccggtggcgg
     1441 ccgtggcgag gtcgtagcgg agctggcgcg tgatgaactc cttcgcgcgg tcgagctgcg
     1501 cctcagtcac gttgtaggtc tccttgttcg cagcaacgta ctccttgaac gccttgaaga
     1561 cgcgctcgtc aacgaccatg tcgttcggct ggaggttgcg ctcgaagtcg ggcatgtcct
     1621 tgaccttgta gccggggtac gcggcgacgc ggccgttcac aagctcgcgg gcgaagccga
     1681 agatggggtc gagcaggcgc acctgctgcg gcgtgagcgt gcgcgccttc acggcctcgt
     1741 cgggcgcgat gccgccgccg ccgtagatgg tgcggcccgt gtcggtcttc gactcctggc
     1801 ctttcggcgc cgtcgtcgtc tgggaggacg ggtcgtcctg cgcgccgatg ccgccgcggt
     1861 agatgtagtc gtagaagccc gtgttcgagt agtcgcgctg tattaggcgg cccgaaggcg
     1921 tgtagtactt cgaggtcgtg agcgtcaacg ccgtgccgta ctcgagcggc atgatgctct
     1981 gcacgagccc cttgccgaag gaggtctcgc cgatgatgag cgcgcggtcg tgatcctgca
     2041 aagcgccggc gactatctcg gaggccgagg ccgtgccgcg gttgaccagg acgacgagcg
     2101 gcgtcatgtc ggggttacgg ttctcggact cgtacctgcg ctcggcgccg cgggcgccgc
     2161 gccccttctg cgtcaggatc gtctgcccgt tggcgaggaa gcgctcggct accatcttcg
     2221 cctggtcgag tatgccgccg ccgttgccgc gcaggtcgag cacgaggccc tgcaggccct
     2281 gcgccttcag cttttcgagc gcctcggcga actcctcggc cgtcgtgtag ttgaagccgc
     2341 gcgtcatgtc tatgtagccg acgccgggct ttatgaagta gtagtcgggg acggtcggct
     2401 gcgagacggc gtcgcgcgtt atctcgacgg tgtccctgcg cccgtccgac gcccgctcga
     2461 ccgtcacgcg gactgtcgtg ccgcgcgggc cgcgcaggcg gtcgcgcacg tccgaggaag
     2521 gcttgccctt gacggactgg ccgtcaacct cgacgatgcg gtcgccgaag cgcaggcccg
     2581 ccttgtaggc cggggtgccg gggaaggtcg agaggatgta ggtgtcggcc gtctcgccta
     2641 tcttgcggtc gccgattgtt gcgccgatgc cgtagtactc ggagcgccag tcggcgcgct
     2701 gctcctcgaa ctccttggcg tcgtaaaagt tcgagtgcgg gtcgagcgac cgcagcatcc
     2761 cgattatcga agacttgaag acgccgttgt agtcgagctt gttgccgtca acgtggttgt
     2821 cctgtatgac ggtcagggcc tcggccaggt cggcctcgac gccctcggtg gcttcgacgc
     2881 gggcagggcg tcgcgcgcgg ctcgtcgggg cgggcgtgtc gccgcccgcg cggccgggct
     2941 cgcccctgcg cgcgggcggc ggcgggggct gcgagccgct ctgctgcgcg atgacgaagg
     3001 ccgggagcag gagcgctaga aggaacagcg tggcgagcgc ggtggaaatt ctctttttca
     3061 cggaagtcaa aaccctcagt tagaacctgg agcccgaacg gccgaagcgg ccggcgccgc
     3121 tcacccgttt ttcttatccg cctcgttccg aaaggcaggc cggtgtagtg taattgatga
     3181 gccggcgggc ggcaaggttg ttcggcggca aaagggcgcg ggccgcttgt aaaatcttgt
     3241 aacgacgccc ggcgccccta cggcctactt tttccccgtc caccaagact ggcgcagggc
     3301 cttctgctcg gtcgtggcgc cggggtcttc ggtgatttcg taggagacgg gcgcgcggcc
     3361 cggcgtcgtc atcgtcagct caagcaggcg gtcgccgcgg aagaccgtga gcgggagcgt
     3421 cgagcccggc ttgaagcgcg agagctgcgc ctggaggctc ttctcggtga cgcgctcgcc
     3481 gccgacggcg agcaggaggt cgccgttcgc gagcacgttg taggcgggcc cgtccgactt
     3541 cacgcccctg acgggcaggc cgaccgagtc cgagggtatg tccgaggcga acgtcacgcc
     3601 caagtctaag cctttctctt ccttccgctc caatttcagc cccgcgtagc cgagggcgcg
     3661 ctcgtagggc agctcctccg tccccgcgac gtagcgcgag aagaactcgt cgaagtctga
     3721 gccggcgacg cgctcgaccg cttcctggaa gccgccgggc tgccagccgg gcttgggcag
     3781 gccgtaggtc tcgtagaggt atctgaacac gtcgtcgagc gagcgcgcgt tcttcgtgcg
     3841 gtggcggatt tcgaggtcga gcagcaggcc gagcagctcg cccttgttgt agtagctgaa
     3901 cgaggcgttg cccgagtcgt cgtgcgcgaa ccaggtgttc atgctcgact cctcgacggt
     3961 gaggattctg cggcccggca aattctgtag cgtctttatc tcttcggcca cggccttcag
     4021 gtagcgcttc ggctcccaga ggccggcgcg cagtaggtgg aggtcgccgt agtagctcgt
     4081 catgccttcg gagacgtata agtcgcgcgt cggcacctgc cgcgtgtagt cgaaggggcc
     4141 gagcacggcg ggccgcatgc gcttcacgtt ccagaggtgg aagaactcgt gggaggcgac
     4201 gccgcgcagg gagtcccagc cctcctcggt gtcgccccgc cacttgcgtc ggttaatgac
     4261 ggtcgagttc aggtgctcga gcccgccgcc gccttccggc gtcatgtggt agatgaagac
     4321 gtagcgtttg aagggcgcgc cgcccatcat gtttacctgc gagcgcacga tggcctcgtg
     4381 ctcgcggcgg aagcgctcgg tgtcgtagtt gtggttgccg tagatggcta tctcgtagcg
     4441 ggcgccggcg tggtcgaagg tgagcacctg gtggttgcct atctcgaagg gcgcgtctat
     4501 gaaggtgtcg tagtcgggcg ccgagaaggt gttggagcgc ccggggacgg ggtcgagccc
     4561 ggtggagatg gcggcccagc gcggcggctt gttcacggtc agctcgacgg ggcggtcttt
     4621 tgcgccgacg acgtaggcga acaggagcgg cccgttgaag tatgcgtgag tgtcgtcgag
     4681 gtgcgcgccc gtgacgccta tctggtcggc gaacaccttg taggtcacgc ggacggcgct
     4741 caggcccgcg gactcgactg tccactcgtt cgtcgccgtc ctaacggcgg gcagcagttg
     4801 cccgcgcgcg gaggaggcgc ggaactcctg cacgttgcgg gccgtgtcca cgacgcggta
     4861 cgcgcccggc acccacacgg ggaactgcac gacgagccgc ggcgcgctca ggttcgagac
     4921 gttcatcgtc acctcgaaga gtcgcgtcgt cggccgggac atccccagct cgtaagttat
     4981 ccgcggcccg tccgcgccct gccgcgcggc ggcggcgggc ggcgcggccg ccatcaacaa
     5041 cagaacgaag agcgcgaagg cgtgcgcgcg cgagacacag ttcttcatag tttctccccc
     5101 cgaggcgcac gccgggcggg cggcgtgccg taagcgttta gcgttagtga cactttaacc
     5161 aaccccgatt cgcgtcacaa gcgcgcccgc gctgcccgtc aggttgcgct cgacgctggc
     5221 gcccccgtag aatgtttgcc aggttgttcc acgaacaatt ttccggcgct cggtttagaa
     5281 gtctggcgag gcgattgccc ccgccgaagg aggttttttg agcagatgag cacccctttt
     5341 gacccgaaag acccggaagt ccttgagccg gttgacgacc tcatgctgca cgaggacgag
     5401 ggcgggcagc cgcacgagcg cgaccgcgtc tcatcgtccg tgcgcgacat agcctcgcgc
     5461 atacccgagt cgctagcctc gataggccgc gacataagcc gcacggtcga gcgcgcgctg
     5521 tcggcgaagg acgactacgt cgtggccgtc aaggtctcgc acgaagcgca ggacaagctc
     5581 gaacagctcg tgcaggccgg cgtcttccgc aaccgcgccg aggccgccgc cttcctcata
     5641 gacgaaggca tcaaggctca gcaggcgctc ttcgaccgcg tcgcgcagaa gctcgccgag
     5701 atagagcgcc tgcgcgccga gctgcgcggc atcgtcaaca gcgaaggaga ggccaggggc
     5761 tagaagttaa acccctttct gattagcccc tagcctctaa gaaccggagg ttttcttgtc
     5821 gtcgcccacg cccacgctcc cgcaggttcc cgtcgagcag ttcacgctcc cgaacggcct
     5881 gcgcgtcatc atgagcgaag accacgcggt gccggtcgtc tcggtcgccg tctattacga
     5941 cgtgggctcc cgcaacgagc gcgaggggcg cacgggcttc gcgcacctct tcgagcacat
     6001 gatgttccag ggctccgaga acgtgccgaa ggccggccac ttccagtacg tcttcaacaa
     6061 cggcgggacg atgaacggca cgacgtcttc ggagcgcacg aactacttcg agactctgcc
     6121 ggccaaccaa ctcccgctcg cgctctggct ggagtccgac cgcatgcgct cgctacgtgt
     6181 gacgcaggag aacctcgaca accagcgcga cgccgtcaag gaggagaagc ggctcacata
     6241 cgacaaccgc ccctactcga acgccttcct ccgcctgaac gagctcatct accgcaaccc
     6301 cgcgaacgcg cactcgacca taggctcgat ggaagacctc gacgccgcca cgattgacga
     6361 cgtgcgcgac ttcttccgcg tctattacgc gccgaacaac gccgtgctcg cgatagtcgg
     6421 cgacttcgac cccggggagg cgcgctcgct cgtcgagaag tatttcgcaa ccatccccgc
     6481 gcagccgcgc ccgcccgagg cggacgtttc cgagcccgag gaggtcgccg ctgggcatga
     6541 actctaccgc gaccctttcg cgcagctacc ggccatcatg ctcggctgga aaatcccgcc
     6601 ccggcgcacc gcggacttct acgccctctc ggccgcgagc gacctccttc tggacggcga
     6661 cagctcgcgc ctctaccagc ggctcgtgaa ggaggaggag tcggtcgtcg gaatccaggg
     6721 cggcataggc gagcggcgcg gcccctcttc gctctacatc ttcgcgatac ccaagcccgg
     6781 ccacacgacc gagcagatac gcgcgacgat tcagggagag atagagcggc tcgcctccga
     6841 aggcccgacg gcggaagaga tggagaagct ccgcaacacg ctcttgaacg acgcggtgcg
     6901 cagccgccag tcaacgctct accgcgcgca gcgcctcgcc gagtacgcgc tctacgacgg
     6961 cgacccctcg ctcttaaaca ccgagataga gcgctacgtc gccgtcacgc ccgacgagat
     7021 caagcgcgcc gtcggccgat acctcctgac cgacaaccac tcggtcatgg aggtcgtgcc
     7081 gtcgcactcg gcgccgcccg agcgcgagcc cgcgccggcc gagcccgagg gcgagccgga
     7141 cgagcccggc ggcccgcccc cccaagtccc ccccaagccc cccgcggagc cgcccccgcc
     7201 cacggagagc cacgaacctt gatagcgcgt gtgacgacgg gcgggccgga gggctgagag
     7261 ctttaggccc gccacccgcg ctcacacttt tcttatgacc caagccgaag aattccgccg
     7321 acagccgccc gcgccgctcc ccccgaggcc gctgaatttg ccggagccgt ccgagacgac
     7381 gctggctaac ggcctgcgcg tggtcgtcgt cgagcaggag aggctccccc tcgtcagctt
     7441 ccgcctcgcc ttccccgtag gcgacgcctt cgacccgccg ggcctgccgg gcctcacgga
     7501 cgtgctctcc gacatgctct tagaaggcac cgagacgcgc acgagccggc agatagccga
     7561 ggaggtagcg cgctacggcg cgaccttgag cgccggcgcg tcgtccgact atacgaccgt
     7621 cgccgcgtct tcgctctcgg cctacgcggg cgagatcttg gagcttctcg ccgacgtgac
     7681 gctgcgcccc tcgttccccg aaaacgagtt ggcgctggcg aaggccaacg cgcagcagaa
     7741 ccttatagct cagcgcgcgc agccgtcgtt cctcgcgacc gaggcgctcg ctgccgtcct
     7801 cttcggagag cacccctact cggtcgtctc ggccacgccg gagtccatcg aggccgtctc
     7861 gcgcgaatca cttctcgccc accaccgctc caagttcgtc cccgaagggg ccgtgctatt
     7921 cgtcgtcggc gacgtgcggc gcgaggagtt gatcgagcgc gtcgagcgcc ttttcggccg
     7981 gtggagcgga ggcccggtcg aggggccgcg cttccccgcc ccgcccgagc cggcggggcg
     8041 cacaatctac accgttgacc gccccggctc ggcgcagtcg aacatcgtcg tcgccaacct
     8101 cgccatcacg cgcacgcacc ccgactactt ccccttcctc gtcatgcaca cgatcctggg
     8161 cgggacggcc tcggcgcggc tctttatgaa cctgcgcgag gagaagggct acacctacgg
     8221 cgcctactcg gtgctcgacg cccgccgcta tgccgggagc ttccgcgcca cggccgaggt
     8281 ccgcacgccc gtgacggggg cgtcgctgcg tgagattttc tacgagcttg cgcgcatacg
     8341 cgaccgtgaa gtgtcggaga aggagcttgc ggacgccaag tcgtacctga cagggatatt
     8401 ccccatcagg ctagagacgc aggaggggct gattgaccag ctcgtgcaga tacgcatgca
     8461 cgggctcccc gaagactacc tgcggacgta ccgcgaccgc gtgagcgccg tgacgcgcga
     8521 ggatgtgcgg cgcgtcgcca acctttacgt gacgcctgac agcgcgtccg tcgtcatcgt
     8581 cggcgacgcg cgcgaggtgc gcgagcaggc cgcgcccttc gccggtcgcg tagttgactt
     8641 cggcgccacg acgcgggaag gcgccgaggc gcgcggctag tttttatttt cggacgtggg
     8701 agcttacgag agatgaacct ggtggggaac tggaaccttg aagtcgcgac gcccttcggc
     8761 aaacaaccgg ccacgctcgt cttcgagggg acgggcggcg cgctctcggg ccgcatcgaa
     8821 tcgcgcctcg gcaacgtgcc gctcgagcac ctgagcgtca cgcacgacag cttcgacgcc
     8881 gccgtgtcgc tcgaattcca gggccgcgac tacgaagcgg acattgacgg gagcgttgac
     8941 ggcgactcca tcagcggcac catcaaggtc aagctcgcca tcgccccgcc catcaagtac
     9001 acaggcaccc gcgccggcta ggcggacggc cgcgtcaatc ggcgatggcg acagacagct
     9061 ctcgcagcgt ggcggagccc gaggcgtcct tctgagccga ctcgtcgcgg ttgacgtggc
     9121 ggtagaggat gtcgcgctgc tgcggccgga agcctgcggc gcggatgagg tggcgcagca
     9181 gcttctcgtc ggctgtgttg tgggcgcccg ccgccgagac gacgttctcc tcgatcatca
     9241 cggagcccat gtcgtcggcc ccgaagcgca gggcgacctg cccgagcttc agcccctgcg
     9301 tcagccacga agactgtatg tgctc
//
LOCUS       DASPKR010000219         8092 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1839892, whole genome shotgun sequence.
ACCESSION   DASPKR010000219 DASPKR010000000
VERSION     DASPKR010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8092)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1839892"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..490)
                     /locus_tag="VD968_06055"
     CDS             complement(<1..490)
                     /locus_tag="VD968_06055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13986.1"
                     /translation="MKSNRTFLSCLLTLMLALAGPASLVASAQGAGEVKPAAAKADPV
                     EQVVVDEAGTYIIYRAADGSTACREATPAEARQLRERAPGLELRQINHLQRVGPKGGG
                     TMDRVESGAAEEAVTGLTIVLRGTAQLDANPEAKAAFTRAAAAWEAIITTPITVVIDV
                     DYG"
     gene            complement(922..4077)
                     /locus_tag="VD968_06060"
     CDS             complement(922..4077)
                     /locus_tag="VD968_06060"
                     /inference="COORDINATES: protein motif:HMM:NF025068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease family protein"
                     /protein_id="HYE13987.1"
                     /translation="MKNRLSPRAALLALCLAASATAVAYRSPSASGQGPARVRQDLER
                     VLTRFDRLTLDPVSALKGAREGRPLTLETSYGAFELDLRPHDLRAPGYRAVAVGADGV
                     ARELGRGAVTTYKASVRGYEGAEARLTLDGETIEGVVITPGGLFFIEPARKFSAAAGR
                     DDFVFYPESSVRKESFGECGVTLAQEVGERASALSAEADTLEVPKGTTAEHVFGPQLQ
                     IDLATEADFEYFNFFKTNNPSLSDPEVRNLAINEIIGIMNQVDGIYNTQLGVRFQIVF
                     QRVWEANNDPYTLTAAGSALDEFTDNYDGSFAPGAPPQRDLVHMWTGKDFNGSTIGIA
                     WRPGLGCPDNSDGFGISQRFDIAPQKFVLTAHEIGHNLGAQHPNQLDVPPSDCNLTIM
                     HASITQSTTFCQYSRRQMEHHSILNAACLTRLTPAGCTYSVTPAAPQMFAPGGGAGNI
                     DITTGAGCNWGVVAAAPWISVTTNETGTGPGASVYTVAANDGGTRRANVEVAGRVFTV
                     TQAASSACIVTPINYGQTLTGTLGSPDCRSGQPDRIQAFVDRYSFTGLAGQRVQVEMT
                     ATSQLDTFLYLIAPDGSVIAENDDIVLAQNTNSRIPPQSGAFFTLPQSGTYFIEATSF
                     EDTAFDTGGYNITLTDGGLTDTVSFSSADYSVNEGVGGDGIGTEGVGFRTITVTRSGD
                     LTTAASVNYATSDGTATRRRDYTQALGTLRFAPGEASKTFRVFITDDVFAPGAQITPP
                     NQPTIVVESEKETVNLTLSNAVGTSLGTVSSAVLTINDNDPGTGQSPVKAASFSTPFF
                     VRQHYLDFLNREPDSGGMNFWSNEIEGCGADQACREVKRQNVSAAFFLSIEFQETGYL
                     VYRMYKSAFGDATSPGVAGTVPVIRLDEFLADTQRIGQGVVVGTPGWPEALEANKAAF
                     AQEFVTRQRFLDNFPVIMTANMYVDQLIARAGATLTPAERQAIIDDVAANNNTAGRAR
                     ALRAVAEHESVRQAERNRAFVLMQYFGYLRRNPDDAPDTNFGGWKFWLTKLDEFHGNF
                     INAQMVKAFITSIEYEQRFGQ"
     gene            complement(4320..6989)
                     /gene="lptD"
                     /locus_tag="VD968_06065"
     CDS             complement(4320..6989)
                     /gene="lptD"
                     /locus_tag="VD968_06065"
                     /inference="COORDINATES: protein motif:HMM:NF016348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0010033 - response to organic substance
                     [Evidence IEA];
                     GO_process: GO:0061024 - membrane organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HYE13988.1"
                     /translation="MRFNLPPISLPGGARALLRCAALVCLFALGGAPRALSQQTNPVD
                     RKVTNPITDTPNVNPLQQDQPVTRPRRRTTQAPARDPGGEPQTLDELDVRADRQTVSG
                     PENARVYVNEGNVDARIGIYRLQADKVTVYEAKTLAVAEGNVVFDQGEFQRITGSRAE
                     WNYTSKTGFFENSTGFTNQTQDGTIIYFTADRVEKVSGNKVVVINAEVTACGDDEVPK
                     WSFKGKRATITLADRVRVKRPRFLVKGVPVFALPYASVSIKPRDRASGFLTPTFSGSG
                     EKGFRLSNAYYQTLGRSADVTVRNDIYTRRGMGFGADLRTRANSRSYLNLGFYIVKDR
                     IFGPEEGPLTPDQGGSSFYMDGVHYFPNGFLAAADINITSSLAYRAVFSDSIQQAISP
                     EERSQVFVNKNAGDYSLNFVARTQVTSIPSVRVRSRALPAVAFDKRPSPLAALAEKLP
                     LYFSFEASIAGVSRKETVEDLATFLSEGNQNPIITPSMVQRLDFHPKFSLPLYFAGWG
                     VTLTARARGTYYSNSIDPATRLVLSRDVTRGYGEFSAEINPPALARNFRHGDGTFWFR
                     HVVEPYLTYRKITDISNFDRVIRFDYLDAVAPTNEIEYGITNRFFARRSTENVMGRVS
                     ARAGVRATATTSSRGGEAREGEEQDGETARPLTPQPYEFLSVTLRQKYFFDPTFGGAL
                     VPGRRNQFYPINTFSGFTYGGVTRRFSPLYVEARLRQPTRADRELFADVRTNIDTLGE
                     GGGLRDLAVSFGIRRRVRVLRAVEAFQTFYYTRAVTLAPSLRQFSDRRGNEPGTLQGS
                     QWSPSVFLGDRDRGLFAGASFFFDFQNRPGRGSSSLVSSVATAGYAWDCCAVTVQDFH
                     FNLGLRQENRLVFSFRLNGIGAFGTEQIGQQFR"
     gene            complement(7125..7598)
                     /locus_tag="VD968_06070"
     CDS             complement(7125..7598)
                     /locus_tag="VD968_06070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13989.1"
                     /translation="MGRRLSEKSFYRLAAGAWFAAAGGVVAALGASAFSFYPEPTTFV
                     LARSVLIVMLITGAAGAVLGSWALDPRAVQSALPAALLGVAVFALSSCVSVFALLAVT
                     YLGMEGSHLGSFVYSLVMMTAGLGLSLGWLLAALGALSGWLLFRQREWIRRKFLP"
     gene            complement(7756..>8092)
                     /locus_tag="VD968_06075"
     CDS             complement(7756..>8092)
                     /locus_tag="VD968_06075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13990.1"
                     /translation="VFVQVVFVTMVYGPIAAYLVEAFPAKIRYTALSLPYHIGNGVFG
                     GLLPLVGLYVVASTGNIYAGLYYPIAVASLTFVVGSLLLKETHSTLIWRELETGRPGD
                     LKSDIEGPA"
BASE COUNT         1305 a         2543 c         2943 g         1301 t
ORIGIN      
        1 tgccgtagtc aacgtctatg acgaccgtga tgggcgtcgt gattatcgcc tcccacgccg
       61 cggcggcgcg cgtgaaggcg gccttcgcct cggggttggc gtcgagctgc gccgtgccgc
      121 gcagaacgat ggtcagcccc gtgacggcct cctcggcggc gcccgactcc acccgatcca
      181 tcgtgccgcc ccccttcggg cctacgcgct ggaggtggtt gatctgtcgt agctcgaggc
      241 ccggcgcgcg ctcgcggagc tggcgcgcct cggcgggcgt ggcctcgcgg caggcggtcg
      301 agccgtccgc ggcccggtag atgatgtagg tgccggcctc gtccaccacg acttgctcga
      361 cggggtcggc cttcgcggcg gcgggcttaa cctctcccgc gccctgcgcg ctcgctacga
      421 gcgaggccgg gccggcgagg gccagcatga gggtcaggag gcacgacagg aaggttctgt
      481 tcgatttcac ggtcaactcc acttgtagcg agcgggcgca ctctcgcccg gccgtccgtc
      541 aggcccgcgg cgcgcgcggg cgcggatatt agtgcgtcag gagaaggggt tcgcggtctg
      601 aggcgctcga cttgcggcgg ggccgctaaa agcccgattt tgcagcccgc cgcggggcca
      661 gagccgggga ggctttcgac acgtcaaaaa cgcccgactt ttgacgccct gaggggcgtt
      721 ttcgttgctt actagaggcc gcggccgagg ggcttttcgg gcgggaaact ctactcaaac
      781 ggggccgggg aggcggggcc gcggggccgc gccccgcgcg caaagaagcc gccaggcacg
      841 tccctcgggg cggaagacct gacggctttc agtctaacaa ggcgccgaga cggcgcgcaa
      901 gacccttttt aggcgcggct cttactggcc gaagcgctgc tcgtactcga ttgaggtgat
      961 gaacgccttg accatctgcg cgttaatgaa gttgccgtgg aactcgtcga gcttggtaag
     1021 ccagaacttc cagccgccga agttcgtgtc gggcgcgtcg tcggggttgc ggcggagata
     1081 cccgaaatat tgcatcagga cgaaggcgcg gttgcgctcg gcctgccgga ctgactcgtg
     1141 ctcggccacg gcgcggaggg cgcgggcgcg gcccgcggtg ttgttattgg ccgccacgtc
     1201 gtcaatgatc gcctgacgct cggccggcgt gagcgtggcg cccgcgcgcg ctatgagctg
     1261 atccacgtac atgttcgccg tcatgatgac ggggaagttg tcgaggaagc gctggcgtgt
     1321 gacgaactcc tgcgcgaagg cggccttgtt cgcttcgaga gcctcgggcc agcccggcgt
     1381 gcctacgacg acgccctgcc ctatgcgctg cgtgtcggcg aggaactcgt cgagccgtat
     1441 gacggggact gtcccggcca cgcccggcga ggtcgcgtcg ccgaaggccg acttgtacat
     1501 ccgatagacg aggtagccgg tctcctgaaa ttcgatggac aggaagaagg cggccgagac
     1561 gttctgccgc ttcacctcgc ggcaagcctg atccgcgccg cacccttcaa tctcgttcga
     1621 ccagaagttc atgccgcccg agtccggctc acggttgagg aagtcgaggt agtgctggcg
     1681 gacgaagaag ggcgtgctga agctcgcggc cttgacgggg ctctggcccg tgcccgggtc
     1741 gttgtcgttg atggtcagta cggccgagga gaccgtgccg agcgaggtgc ctacggcgtt
     1801 gctcaaggtc aggttgacgg tctctttctc gctctcaacg acgatggtcg gctggttcgg
     1861 gggcgttatc tgcgcgccgg gggcgaacac gtcgtcggtg atgaagacgc ggaaggtctt
     1921 tgaagcctcg cccggcgcga agcgaagggt gccgagcgcc tgcgtgtagt cgcggcgccg
     1981 cgtggccgtg ccgtccgagg tcgcgtagtt gacgctggcg gccgtcgtga ggtcgcccga
     2041 gcgcgtgacg gtgatggttc ggaagcccac gccctcggtg cctatgccgt cgcccccgac
     2101 gccctcgttg acgctgtagt cggcgctgct gaaggagacg gtgtcggtca gcccgccgtc
     2161 cgtaagtgtg atgttgtagc cgcccgtgtc gaacgcggtg tcctcgaacg aggtggcctc
     2221 gatgaagtag gtgccggact gcggcagcgt gaagaaggcg ccggactgcg ggggtatgcg
     2281 cgagttcgtg ttctgcgcga gcacgatgtc gtcgttctcg gctatcacgg agccgtcggg
     2341 cgctatgagg tagaggaacg tgtcgagctg gctcgtggcc gtcatctcga cctgcacgcg
     2401 ctggccggcg agccccgtga aggagtagcg gtcaacgaat gcctgtatgc ggtcgggctg
     2461 gcccgagcgg cagtcgggcg agccgagcgt ccccgtcaga gtctgcccgt agttgatggg
     2521 agtgacgatg caggcgctcg acgccgcctg cgtgacggtg aagacgcggc cggcgacctc
     2581 gacgttggcg cggcgcgtgc cgccgtcgtt ggcggcgacc gtatagacgg aggcgcccgg
     2641 ccccgtgccg gtctcgttcg tcgtgacgct tatccagggg gcggccgcga cgacgcccca
     2701 gttgcagccc gccccggtcg ttatgtcaat gttgccggcg ccgccgccgg gcgcgaacat
     2761 ctgcggcgca gcgggcgtca ccgagtaggt gcagcccgca ggcgtcaggc gcgtaagaca
     2821 cgcggcgttc aagatggagt ggtgttccat ctggcggcgc gagtactggc agaaggtcgt
     2881 gctctgcgtg atgctggcgt gcatgatggt gaggttgcag tccgagggcg gcacgtccaa
     2941 ctggttcggg tgctgcgcgc cgaggttgtg gcctatctcg tgggcggtga ggacgaactt
     3001 ctggggcgcg atgtcgaacc tctgcgagat gccgaagccg tcggagttgt cggggcagcc
     3061 gaggcccggc ctccaggcga tgccgatggt cgagccgttg aagtccttgc ccgtccacat
     3121 gtgcacgagg tcgcgctgcg gcggggcgcc cggcgcgaac gagccgtcgt agttgtcggt
     3181 gaactcgtcg agcgcggagc cggcggccgt cagcgtgtac gggtcgttgt tggcctccca
     3241 cacgcgctgg aagactatct ggaagcggac gccgagctgc gtgttgtaga tgccgtcaac
     3301 ctggttcatt atcccgatta tttcgttaat cgccagattt ctgacctcgg ggtctgacag
     3361 gctcgggttg ttagtcttga aaaaattgaa gtactcgaag tcggcctcgg tcgcgagatc
     3421 aatctggagc tgcgggccga agacgtgctc ggccgtcgtc cccttcggca cctcaagcgt
     3481 gtcggcctcg gcgctcaaag ccgaggcgcg ctcgcccacc tcctgcgcca gcgtcacccc
     3541 gcactcgccg aaagactcct tcctcacgct cgactcgggg tagaagacga agtcgtctcg
     3601 gcccgccgcg gcggagaact tgcgcgcggg ctcgatgaag aagagcccgc ccggcgtgat
     3661 gacgacgccc tcgatggtct cgccgtcaag ggttagccgc gcctctgccc cctcgtagcc
     3721 acgcacggaa gccttgtagg tcgtcacggc cccgcggccc agctcgcggg ccacgccgtc
     3781 ggcgcccacg gccacggcgc ggtagccggg cgcgcgcagg tcgtgcggcc gaaggtcaag
     3841 ctcgaaggcg ccgtaggaag tttccagcgt gagcggccgc ccctcgcgcg cgcccttgag
     3901 cgccgagacg gggtcgagcg tgagacggtc gaaacgcgtc aatacccgct ccaagtcctg
     3961 gcgcacgcgc gcaggcccct ggcccgaggc cgacggcgaa cggtacgcga cggcagtcgc
     4021 cgaggccgcc aggcacagcg cgagcaacgc cgcgcggggg gacaagcgat tcttcatcat
     4081 caacctcacg agcggggaga aaagacgatt ccggccttac gatttaagcc cttgatttca
     4141 gaggcgggta aagctctccg gacaggccga cggattttag cacacggcgc gaccccttaa
     4201 aaaacgcgcc ggcctcttaa agccttcgcg cagccccgag agcccgaaga ccgcggggct
     4261 gcgcgaaaga attttcggga cgctgtgccg ggcgcgaacg cgggggagag gccgggcggt
     4321 taacggaact gctggcctat ctgctctgtg ccgaaggcgc cgatgccgtt gaggcggaag
     4381 ctgaagacga ggcggttctc ctggcggagg ccgaggttga agtggaagtc ctgcacggtg
     4441 acggcgcagc agtcccaggc gtagccggcc gtggcgacgg agctgacgag cgaggagctg
     4501 ccgcggcccg gtcggttctg gaagtcgaag aagaagctcg cgccggcgaa gaggccgcgg
     4561 tcgcggtcgc cgaggaagac ggacgggctc cactgcgagc cttgcagcgt gccgggctcg
     4621 ttgccgcggc ggtcgctgaa ctgtcgcagg ctgggggcga gcgtgacggc gcgcgtgtag
     4681 tagaaggtct ggaacgcttc gacggcgcgc agcactctca cgcggcggcg gatgccgaag
     4741 gagacggcga ggtcgcggag gccgccgccc tcgccgagcg tgtcaatgtt cgtgcgaacg
     4801 tcggcgaaca gctcgcggtc ggcgcgcgtg ggctggcgca gtcgtgcctc gacgtagagc
     4861 ggcgagaagc ggcgcgtcac gccgccgtag gtgaagccgg agaaggtgtt gatggggtag
     4921 aactggttgc ggcggccggg gacgagggcg ccgccgaacg ttgggtcgaa aaaatacttc
     4981 tgccggagcg tgaccgaaag gaactcgtag ggctgcggcg tgagcgggcg cgccgtctcg
     5041 ccgtcctgct cttcgccctc gcgcgcttcg ccgccgcgcg aactggtcgt ggccgtcgcg
     5101 cggacgcccg cgcgggccga gacgcgcccc atcacgttct ccgtcgagcg acgcgcgaag
     5161 aagcggttcg tgatgccgta ctctatctcg ttcgtcgggg cgacggcgtc gaggtagtcg
     5221 aagcgtatga cgcggtcgaa gttcgagatg tcagtaatct tccggtaggt caggtagggc
     5281 tcgacgacgt ggcggaacca gaacgtgccg tcgccgtggc ggaagttgcg cgcgagcgcg
     5341 ggcgggttaa tctcggcgct gaactcgccg tagccgcgcg tcacgtcgcg cgagagcacc
     5401 agtcgcgtcg cagggtcaat cgagttcgag tagtaagtcc cccgcgcgcg cgccgtaagc
     5461 gtcacgcccc accccgcgaa gtagagcggc aggctgaact tcgggtggaa gtcgaggcgc
     5521 tgcaccatcg agggcgtgat gatggggttc tggttgccct cggagaggaa ggtcgcgagg
     5581 tcttccacgg tctccttgcg gctcacgccc gctatgctcg cctcgaacga gaagtagagc
     5641 ggcagctttt cggcgagcgc ggccagcggg ctcggccgct tgtcgaaggc gacggcgggc
     5701 agggcgcgcg agcgcacgcg caccgaaggg atggaggtga cctgcgtgcg cgcgacgaag
     5761 ttgagcgagt agtcgccggc gttcttgttg acgaagacct gcgagcgctc ctcgggcgag
     5821 atggcctgct gtatggagtc ggagaagacg gcgcggtagg cgaggctcga tgtgatgttg
     5881 atgtcggccg cggccagaaa gccgttcggg aagtagtgga cgccgtccat gtagaagctg
     5941 gagcccccct ggtcgggcgt gagcggcccc tcctccgggc cgaatatcct gtccttgacg
     6001 atgtagaagc cgaggttgag gtaggagcgc gagttggcgc gcgtgcgcag gtccgcgccg
     6061 aaccccatcc cgcggcgcgt gtatatgtcg ttgcggacgg tcacgtcggc cgagcgcccg
     6121 agcgtctggt agtaggcgtt cgacaggcgg aagcccttct cgcccgagcc cgagaaggtc
     6181 ggcgtcagga agcccgaggc gcggtcgcgc ggctttatcg agaccgaggc gtaagggagc
     6241 gcgaagaccg gcacgccctt gacgaggaag cgcgggcgct tgacgcgcac gcggtcggcc
     6301 agcgtgatgg tcgcgcgctt gcctttaaaa ctccacttcg gcacctcgtc gtcgccgcag
     6361 gccgtcacct ccgcgttgat gactacgacc ttgttgcccg acaccttctc cactcggtcg
     6421 gccgtgaagt agatgatggt gccgtcctgc gtctggttcg tgaaccccgt cgagttctcg
     6481 aagaagccgg tcttggacgt gtagttccac tcggcacgcg agcccgttat gcgctgaaac
     6541 tcgccctggt cgaagaccac gttgccctca gcgacggcga gcgtcttcgc ctcatagacc
     6601 gtcaccttgt cagcctgcag gcggtagatg cctatgcgcg cgtcaacgtt cccctcgttg
     6661 acatagacgc gcgcgttctc ggggccgctc acggtctggc ggtcggcgcg cacgtcgagc
     6721 tcgtcgagcg tctgcggctc gccgcccggg tcgcgggccg gcgcctgcgt cgtgcggcgg
     6781 cgcgggcgcg tgacgggctg atcctgctgc aaggggttta cgttaggggt gtcggtgatg
     6841 gggttcgtga ccttgcggtc aacggggttc gtctgctgcg agagggcgcg cggcgcgccg
     6901 ccgagcgcga agaggcacac tagcgcggcg catcggagca gcgcgcgcgc cccgcctggc
     6961 agggagatgg gaggaagatt gaagcgcaag cgtggaaccg gaagcctccg cgaatggcgg
     7021 ggcgagcgcg ccgtccgcaa ccttcgattc gcccgccgcc cgaaaccgcg gccgatgcta
     7081 acacgcgccg ccgaagcccg acaagcaagg ctaaagtccg cgcatcaggg aaggaatttc
     7141 cgccttatcc actccctctg gcggaacagc agccagcccg agagggcgcc gagcgcggcg
     7201 agcagccagc ccaacgagag ccccaggccc gccgtcatca tcactaagct gtaaacgaac
     7261 gagccgaggt gcgagccctc catcccgagg tacgtgacgg cgagcagcgc gaagacggag
     7321 acgcaggacg agagcgcgaa gaccgcgacg cccagcagcg cggccggcag cgccgactgc
     7381 accgcccgcg ggtcgagcgc ccaagagcct aagactgccc cggccgcgcc tgttatcagc
     7441 atcactatca acaccgagcg cgcgagcacg aacgtcgtcg gctcggggta gaacgagaag
     7501 gcggaggcgc ccagcgcggc cacgacgccg cccgcggccg cgaaccacgc gcccgccgcg
     7561 agcctgtaga aactcttctc cgaaagacgc ctgcccatgt gcctcgcccc tccccgcgac
     7621 ggcacatggc aagcccggtg ccggaaggtc gggggcggcg cgcggccggc aaattcgcgt
     7681 atgaaaggct cgcccccgga aattctcggc ggcgcaagtt gcgaaggcgg gccgggccgc
     7741 ctagcggatt gcgaatcagg cggggccttc gatgtcgctc ttcaagtcgc cggggcgccc
     7801 cgtctcaagc tcccgccaga tgagcgtgct gtgcgtctcc ttcaggagca gcgagccgac
     7861 gacgaacgtc aaggaggcga cggctatagg gtagtagagc ccggcgtaga tgttgcccgt
     7921 gctcgccacc acgtagaggc cgacgagcgg gagcaagccc ccgaacactc cgttgcctat
     7981 gtggtagggg agcgagaggg cggtgtagcg aatcttcgcc gggaacgcct cgacgagata
     8041 agccgcgatg gggccgtaca ccatcgtcac gaagacgacc tgcacgaaga cg
//
LOCUS       DASPKR010000220         2950 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1193619, whole genome shotgun sequence.
ACCESSION   DASPKR010000220 DASPKR010000000
VERSION     DASPKR010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2950)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2950
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1193619"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(6..1373)
                     /locus_tag="VD968_06080"
     CDS             complement(6..1373)
                     /locus_tag="VD968_06080"
                     /inference="COORDINATES: protein motif:HMM:TIGR02913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13991.1"
                     /translation="MLYLRTVGPRLTALASLCLVLALACAGASAQQSYGIVDLGTLPG
                     GTSSFGMGVNNTGQAVGYSGIPAGQHAFTYGGGSMSDFLSAFHAVNGGSSQGFGINDS
                     GQSTGLIRLSANSFLPRGFFHSGGAVTVLGVLPGGLSSQGNAVNSTGQVAGLSGSSGG
                     NRAFLWSGGVMTDLGVLGLATFNNSEATSVNDAGQVVGVSSTATGANHAFLWSGGSMQ
                     DLGVLPGGGTISSAADINNAGQVVGFSNVPGALIQVAHAFLWQGGVMQDLGTLGGPTS
                     QARSVNDSGTIVGVSTIASNQTRPFVYSNGVMTDLTTLLPAGHCFTNIDVRAIGNDGT
                     IVGSAQLNGQFRAVMLVPGSTAGGGGNCGGPTPPPPTPSELIEQMQAIVANVSNNGVS
                     NSLGTKLKQVLNFMGDPSKATACNHLAAFMSELDAQDGKHVSAADSAALRLKAAQVAG
                     LLGCQ"
     gene            complement(1567..2148)
                     /locus_tag="VD968_06085"
     CDS             complement(1567..2148)
                     /locus_tag="VD968_06085"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HYE13992.1"
                     /translation="MSIATKHGDAGETGLIGGARVSKADLRVEAYGTIDELGSAMGLA
                     RSICDDAEVRELTKTIQRELFVVSGAVASPRGDDDSSPAAHVTAEMVERLTEHVRRVE
                     ATEGILSDWSLPGEHAAAAAYDVARTVCRRAERCVVRLGESGASVGANVVPYLNRLSD
                     LLWLLGRLLELRVGADARLRDDDHKGPRWSRAW"
     gene            complement(2175..>2950)
                     /locus_tag="VD968_06090"
     CDS             complement(2175..>2950)
                     /locus_tag="VD968_06090"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE13993.1"
                     /translation="RDSWHQRGSDQWLRVRGGNDLLPKAFASRLSDRIRYGTPVVRIE
                     HDARGVRAVAARAGARETFAADRLVCAVPFSVLRRVEVSPPFSEGKRRAVEQLSYFSA
                     ARVSLQSRKKFWHDAGLSGFASTDLPLGEVFDMTANQEGRRGILQAYAGGRHARAIAA
                     MTEGERVSFVLGQVESVFPGARENFEGGASKCWDEDPWSLGASSWYKPGQMYELWPHV
                     PRAEGRVHFAGDHTSAWIRWMNGALQSGNRAAREVNEAE"
BASE COUNT          461 a          967 c         1055 g          467 t
ORIGIN      
        1 ggtgtttact ggcagccgag gaggccggcc acctgcgccg ccttgaggcg gagcgccgcg
       61 gagtcggcgg ccgagacgtg cttgccgtcc tgcgcgtcta gctcgctcat gaaggcggcg
      121 aggtggttgc aggccgtcgc cttgctgggg tcgcccatga agttgagcac ctgcttgagt
      181 ttcgtgccca ggctgttcga gacgccgttg ttcgagacgt tggcgacgat ggcctgcatc
      241 tgctcgatca gctccgaggg cgtcgggggc gggggcgtcg ggccgccgca gttgccgccg
      301 ccgccggccg tgctgccggg gacgagcatg acggcgcgga actggccgtt gagctgggcc
      361 gagcccacga tggtgccgtc gttgcctatg gcgcgaacgt ctatgttggt gaagcagtgg
      421 cccgcgggca ggagcgtcgt caggtcagtc atcacgccgt tgctatagac gaaggggcgc
      481 gtctggttcg aggcgatggt ggagacgccg acgatggtgc cggagtcgtt gacggagcgc
      541 gcctggctcg tcgggccgcc gagcgtgccg aggtcttgca tcacgccgcc ctgccacagg
      601 aaggcgtgcg ccacctggat gagcgcgccc gggacgttcg agaagcccac gacctgtccg
      661 gcgttgttta tgtcggccgc cgagcttatc gtgccgccgc ccgggagcac gccgaggtcc
      721 tgcatcgagc cgcccgacca gaggaaggcg tggttcgcgc ccgtggccgt agaggagacg
      781 cccacgacct gcccggcgtc gttgacgctc gtcgcctcgc tgttgttgaa ggtggcgagg
      841 cccagcacgc cgaggtcggt catgaccccg cccgaccaga ggaaggcgcg gttcccgccg
      901 gagctgcccg acaggccggc cacctgcccc gtgctgttga ctgcgttgcc ctggctgcta
      961 aggccgcccg gcagcacgcc aagcaccgtg actgcgccgc cgctgtggaa gaagccgcgc
     1021 ggcaggaagc tgttggccga aaggcgtatg aggccggtgg actggcccga gtcgttgatg
     1081 ccgaagccct gcgacgagcc gccgttaacc gcgtggaagg cggagaggaa gtcgctcatc
     1141 gagccgccgc cgtaggtgaa ggcgtgctgc cccgcgggta tgcccgagta gccgaccgcc
     1201 tggcccgtgt tgttgacgcc catgccgaag ctcgacgtgc cgccggggag cgtgccgagg
     1261 tcgacgatgc cgtagctctg ttgcgcagag gcgcccgcac aggcgagggc gagcacgagg
     1321 cacagggatg cgagggcagt caggcgtggg ccgactgtgc gtagataaag cataggggaa
     1381 cttctcctta agaaagtggt tggggttcgg attttctggg ctggcctggc tcccggaaag
     1441 cgttttacgg gagggcgaac tgcgtgagcg cacagcacac taatcaaacg ccgccggaat
     1501 gtcaaattac gggaggggta aacggccggc gcgagggagt tttcggctag ggctgcgtcc
     1561 ggcctttcac cacgcccgcg accatcgcgg ccctttgtgg tcgtcgtcgc ggaggcgcgc
     1621 gtccgcgcca acgcggagtt caagcaggcg gcccaggagc cagagcaggt cggagaggcg
     1681 gttgaggtaa gggactacgt tggcgccgac gctcgcgccc gactccccga ggcgcacgac
     1741 gcagcgctcg gcgcggcggc agacggtgcg cgccacgtcg taggcggcgg cggcagcgtg
     1801 ctcgcccggc agagaccagt cggagagtat gccttcggtc gcctcgacgc gacggacgtg
     1861 ctctgtaagg cgctcgacca tctctgccgt gacgtgggcg gcgggcgagg agtcgtcgtc
     1921 gccgcgcggg ctcgccaccg cgccgctcac gacgaacagc tcgcgctgaa tcgtcttggt
     1981 aagctcgcgc acctcggcgt cgtcgcagat cgagcgcgct aaacccatcg ccgaccccag
     2041 ctcgtcaatc gttccgtaag cctctacgcg caagtccgcc ttcgacaccc tcgcgccgcc
     2101 tatcagtccc gtctcgcccg cgtcgccgtg cttcgtagca atgctcatat taacctcgca
     2161 aatgaattgg gaatttactc ggcctcgttc acttcgcgcg cggcgcggtt gccggattgg
     2221 agcgcgccgt tcatccacct tatccaggca gatgtgtggt cgcccgcgaa gtggacgcgc
     2281 ccctcggccc gcggcacgtg aggccacagc tcgtacatct ggccgggctt gtaccaggag
     2341 gaggcgccga gcgaccaagg gtcttcgtcc cagcacttcg acgcgccgcc ctcgaagttc
     2401 tcgcgcgcgc ccggaaagac cgactccacc tgcccaagca caaagctgac gcgctcgccc
     2461 tccgtcatcg cggcgattgc gcgcgcgtgc cgcccgcccg cgtaagcctg aagtatgccg
     2521 cggcggccct cctggttcgc ggtcatgtcg aagacctcgc cgagcggaag atccgtgctc
     2581 gcgaacccgc tcaggcccgc gtcgtgccag aattttttgc gcgactgtag cgagacgcgc
     2641 gcggcagaga agtaggagag ctgctcgacg gcgcgacgct tcccctccga gaagggcggc
     2701 gagacctcga cgcgcctgag cacggagaaa gggacggcgc agactaatcg gtctgcggcg
     2761 aaagtctccc gcgcgcccgc gcgcgcggcg acggcgcgca cgccgcgcgc gtcgtgctcg
     2821 atgcggacga cgggagtgcc gtaccgaatc ctgtccgaaa ggcgcgaggc gaaggcttta
     2881 ggcaggaggt cgttaccgcc cctgacgcgg agccactggt ctgagccgcg ctggtgccaa
     2941 ctgtcgcgca
//
LOCUS       DASPKR010000221         5563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_934528, whole genome shotgun sequence.
ACCESSION   DASPKR010000221 DASPKR010000000
VERSION     DASPKR010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5563)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5563
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_934528"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            307..1791
                     /locus_tag="VD968_06095"
     CDS             307..1791
                     /locus_tag="VD968_06095"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013682.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 47 protein"
                     /protein_id="HYE13994.1"
                     /translation="MHRATALLLAFFIFAATPAALAAPRRADAMSAAERRRMAARVRS
                     EFLHAWRGYKKYAWGHDDLRPLSKTHHDWYGQPLLMTPVDALDTMILMGLKEEADEAR
                     EHIAANLSFDRDIFVQNFEVTIRLLGGLLSGYQLTGDRRLLALAEDLGARLLPAFDSP
                     TGLPYRFVNLRTGKTRGPVTNPAEAGTLLVEFGTLARLTGRRAFYDKAKRSLAEVYKR
                     RSPLGLVGQRINVETGEWASTASHISAEIDSYYEYLLKCWLLFGDEDCRRMWAESVAA
                     VNKHLADEVRGELWYGHAEMSTGRRTATRFGALDAFFPAVLALSGDLRRARRLQASAF
                     RMWSKHGVEPEEFDYSTGEAGDAGYPLRPEIVESTYYLHRLTRDPEYLRMGERLFEDF
                     VRHCKTDEAYAALKSVVTKEKADSMQSFLFAETFKYFYLLFAPPSTLDFDGVVFNTEA
                     HPIRKPERPKRPGRRPRALSRHSDLREAMSIEKRYFTSDLSSLS"
     gene            complement(1719..2777)
                     /locus_tag="VD968_06100"
     CDS             complement(1719..2777)
                     /locus_tag="VD968_06100"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HYE13995.1"
                     /translation="MYNAKAYSAAGVTSPLLPTTIQRRDPGERDVQIEILFCGICHSD
                     LHSVRDEWNEFMPTVYPIVPGHEIVGRVTAVGPAVTRFKPGDLAGVGCMVASDRTCPE
                     CRDGLEQFCPNATFTYNAPDEHTGGVTYGGYSDSIVVDEHFVLRVPSSLDPAGAAPLL
                     CAGITTYSPMRRWGVAAGQKVGVVGLGGLGHMGVKFARSLGAHVVAFTTSPGKREDAL
                     RLGADEVVVSRNADEMEKHAGSFDFILDTVSAEHDINAYINLLRRDGRLTLVGAPEKP
                     LALAGMGLLFGRRSLSGSLIGGIAETQEMLDFCGVHRITADVEVIPIQKVNEAYERLL
                     KSDVKYRFSIDMASLKSE"
     gene            complement(2841..4064)
                     /locus_tag="VD968_06105"
     CDS             complement(2841..4064)
                     /locus_tag="VD968_06105"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF017743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HYE13996.1"
                     /translation="MEKGSERPTRAGGEALRPGAELEVTVERVLPGGLGLAHASGQTI
                     LVALSAPGDRARVRVESVRSRVGFASIVEILEPSPSRVEPPCPYFGRCGGCDFQQLSY
                     EAQLAAKAEIIRDCLRRVARAEPPDEIPVTPSPAEWRYRSRARWQHDARSGALGYYER
                     GSHRVCDVSTCPVAAPEVEDRLLRLRASMGEGRLPAGAHEFEAVAGDSGVSLAPAVED
                     GDEAEQSRTIGGERYRFDARCFFQINHTLLEALVAEGVGDASGDCALDLYAGVGLFTL
                     PLARRFRRVTAVEGNAAAARYARRNLAGAGLDNARVITAGVGDWLARKSAHLGALDFL
                     LLDPPRAGAEPEALRRIVALRPRRVSYVSCDPATLARDLRALLSEGYALTSLRAFDLF
                     PQTHHVETVAHLSAP"
     gene            complement(4143..4547)
                     /locus_tag="VD968_06110"
     CDS             complement(4143..4547)
                     /locus_tag="VD968_06110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13997.1"
                     /translation="MAKMIVKRVGVFSLAKLQAVIGVGLGLVIGIPLGLIMIIFGAAI
                     MSGGSSSATGGGISVGIIGLFYMIGLPIMYGVIGFIGGAITALIYNVASGVLGGLELE
                     LENADTGYTAPPPPSQWGAGQYEPGQQQQYPY"
     gene            complement(4584..5366)
                     /locus_tag="VD968_06115"
     CDS             complement(4584..5366)
                     /locus_tag="VD968_06115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13998.1"
                     /translation="MSTTEGARAEAERPAAPLNYFNYFTEIEDAFVRRRGKHLLLSPM
                     DWALMDSWKQMGVPLHVVLRGIETAFDSYESRPRNRSVKSLYYCQEEVEAQFAEWLES
                     QRGASATAEGEDEPGANETRGLPFPREVIAAHLADSREALSRAAVGRAERTGGDVLTE
                     ALARAASRLGELEADFNAAARPDAELLEGSLTDLEALLDRAIRSSLPPEALVAKRAEA
                     EAQLRQYRGRMERTTYEQTLENLLAKTLREECRVPRLSLFYL"
BASE COUNT          885 a         1830 c         1958 g          890 t
ORIGIN      
        1 ccgcgtcgaa gcctaagagg ggggcgtcgt ccgggggcgg cgcggccttc gcgggcagca
       61 gagagcatag gagcagtagc gcgactgcgg cgcgcgttcg gctttggcgc atcgggcggc
      121 ctccggtttt ggagtttgaa agacttgcgg cggcgaaagc gctccggact ttattacaga
      181 gcgtcgcgcg ccttcaaggg ctcgggcgct cgcgcccgcc ggccttgacc gcttctggcg
      241 ggtgcggtac gaatggcgcc gcgatttctc gaatgaccga ggagccggga ggcaagcgcg
      301 ttgaccatgc acagagcgac ggcccttctt ttggccttct tcatcttcgc ggctaccccc
      361 gcggcgctcg ccgcgccccg acgcgctgac gccatgagcg ccgccgagag gcgcaggatg
      421 gcggcccgcg tgcgctcgga gttcctgcac gcgtggcgcg gctataagaa gtacgcttgg
      481 ggccacgacg accttcggcc gcttagcaag acgcaccacg actggtacgg gcagcccctc
      541 ctgatgacgc ccgttgacgc tctcgacacg atgatactca tgggcctcaa agaggaggcc
      601 gacgaggcga gggagcacat cgccgccaac ctctcgttcg accgggacat cttcgtgcag
      661 aacttcgagg tcacgatacg ccttctcggc gggctgctct ccggctacca gctcacgggt
      721 gacaggcggc tcctcgcgct cgcggaggat ttgggggcga ggctgctgcc cgccttcgac
      781 tcgccgacgg ggctgcccta caggttcgtt aacctcagga cggggaagac gcgcggcccc
      841 gtcaccaacc cggccgaggc cggcacgctg ctcgtcgagt tcggcacgct cgcgaggctc
      901 acgggccggc gcgccttcta cgacaaggcc aagcgctcgc tcgcggaagt gtacaagcgc
      961 cgctcgcccc tcggcctcgt cggccaaagg atcaacgtcg agacgggcga gtgggcgagc
     1021 acggccagcc acataagcgc cgagatagac tcctactacg aatacctcct gaagtgctgg
     1081 ctgctcttcg gcgacgagga ctgccgcagg atgtgggccg agagcgtagc tgccgttaac
     1141 aaacacctgg cggacgaagt gcgtggcgag ctgtggtacg gccacgccga gatgagcacg
     1201 ggcaggcgca cggcgacccg gttcggcgcg ctcgacgcct tcttccccgc cgtgctcgcg
     1261 ctctcgggcg acctccggcg cgcgcgccgt ctgcaagcct ccgccttcag gatgtggtcg
     1321 aagcacggcg tcgagcccga ggagttcgac tacagcaccg gcgaggccgg cgacgcgggc
     1381 tacccgctac ggcccgagat agtcgagtca acctactacc tgcaccgcct cacgcgcgac
     1441 cccgagtacc tgcgcatggg cgagcgccta ttcgaggact tcgttcgcca ctgcaagacc
     1501 gacgaggcat acgccgccct caagagcgtt gtgacgaaag agaaggccga ctcgatgcag
     1561 agcttcctct tcgccgagac attcaaatac ttctacctcc tgttcgcgcc gccgagcacg
     1621 ctcgacttcg acggagtcgt cttcaacacc gaagcccacc cgataagaaa gcccgagcgg
     1681 ccgaaacgtc cgggccgccg tccccgagcg ctgagccgtc attcggattt gagggaggcc
     1741 atgtctatcg agaagcggta cttcacgtct gacttgagca gcctttcgta ggcctcgttg
     1801 accttctgga tggggatgac ttccacgtcg gccgtgatcc ggtgcacgcc gcagaagtcg
     1861 agcatctcct gcgtctctgc gatgccgccg atgagcgacc ccgaaaggct gcggcgcccg
     1921 aacaggaggc ccatgccggc gagtgcaaga ggcttctccg gggcgcctac gagggtgagc
     1981 cggccgtcgc ggcggagcag gttgatgtag gcgttgatgt cgtgctcggc cgagacggtg
     2041 tcgaggatga agtcgaagct gccggcgtgc ttctccatct cgtcggcgtt gcgggatacg
     2101 acgacttcgt cggcgccgag gcgtagcgcg tcctccctct tgccgggcga ggtggtgaag
     2161 gcgacgacgt gcgccccgag cgagcgcgcg aacttcaccc ccatgtggcc caagcccccg
     2221 aggccgacca cgccgacctt ctggcccgcg gcgacgcccc agcgtcgcat gggcgagtag
     2281 gtcgtgatcc ccgcgcacag gagcggcgcg gccccggcgg ggtcgaggct agaggggacg
     2341 cgcaggacga agtgctcgtc cacgacgatg ctgtcagagt agccgccgta ggtgacgccc
     2401 cccgtatgtt cgtccggcgc gttgtaggtg aaggtcgcgt tcgggcagaa ctgctcgagg
     2461 ccgtcccggc actcggggca ggtgcggtcg gaggcgacca tgcagccgac cccggcgagg
     2521 tcgccgggct tgaacctggt gacggccggg ccgaccgcgg tgacgcggcc gacgatctcg
     2581 tggccgggga cgattggata gacggttggc atgaattcgt tccactcgtc acgcaccgaa
     2641 tggaggtctg agtggcagat gccgcagaaa agtatttcga tctgcacgtc gcgctcgccg
     2701 gggtcgcgcc gctggatcgt ggtggggaga agcggcgatg tcacaccggc ggcggagtac
     2761 gccttcgcgt tgtacatgga tttatgctcc tatcaaaatg tggcgggccc ctctggttcg
     2821 gcccacttcc gtttatgtta tcagggggcg gagaggtgtg cgaccgtctc gacgtggtgc
     2881 gtctggggga acaagtcgaa ggcgcggagg gaagtgagcg cgtaaccttc ggagagcagg
     2941 gcgcggaggt cgcgggcgag cgtggccggg tcgcaggata cgtaggagac gcggcgcggg
     3001 cgcagggcga cgatgcggcg aagggcctcg ggctcggcgc cggcgcgcgg cgggtctagg
     3061 aggaggaagt cgagggcgcc gaggtgcgcg gatttgcgcg cgagccagtc gcccacgccg
     3121 gccgtgatga cgcgcgcgtt gtcgaggccc gcgcccgcaa ggttgcggcg ggcgtagcgc
     3181 gcggccgcgg cgttgccctc gacggccgtg acgcgccgga agcggcgggc cagaggcagc
     3241 gtaaagaggc cgacgcccgc gtagaggtcg agcgcgcagt cgcccgaggc gtcgcccacc
     3301 ccttcggcga cgagggcttc gagcagcgtg tggtttatct ggaagaagca gcgggcgtcg
     3361 aagcggtatc gctcgccgcc tatcgtgcgc gactgctccg cctcgtcgcc gtcctcgacc
     3421 gcgggcgcga gcgagacgcc cgagtccccg gccacggcct cgaactcgtg cgcgcccgcg
     3481 ggcagacgtc cctcgcccat cgaggcgcgc aggcgcagga gcctatcctc gacctcgggc
     3541 gcggcgactg ggcacgtgct tacgtcgcaa actctgtgcg agccgcgctc gtagtagccg
     3601 agcgcgcccg agcgcgcgtc gtgctgccag cgcgcgcgcg agcggtagcg ccactcggcg
     3661 ggcgagggcg tgacggggat ttcgtcgggc ggctctgcgc gcgcgacacg ccgcaggcag
     3721 tcgcggatta tctcggcctt ggcggcgagc tgcgcttcgt aagaaagctg ctggaagtcg
     3781 cagccgccgc agcgcccgaa gtaagggcag ggcggctcga cgcgcgaggg cgagggctcc
     3841 aatatttcga cgatggaggc gaagccgacg cgcgagcgca ccgactcgac tctcacgcgc
     3901 gcgcggtcgc ccggcgcgga gagcgccacg aggattgtct gccccgaggc gtgcgcgagc
     3961 cccaagccgc ccggcagcac gcgctcgacg gtgacttcaa gctccgcgcc gggccgcaaa
     4021 gcttcgccgc ccgcgcgcgt cggccgctcg cttcccttct ccataagagc agtgacgagc
     4081 gacgagcgac aagtgacggg aggacagctt cctgcccgtc acttgtcgct cgtcaaagct
     4141 tttcagtacg ggtactgctg ctgctggccc ggctcgtact ggccggcgcc ccactgcgac
     4201 ggcgggggcg gcgccgtgta gcccgtgtcg gcgttctcta gctcaagctc gaggccgccg
     4261 agcacgccgg aggcgacgtt gtagatgagc gccgttatcg cgccgccgat gaagccgatg
     4321 acgccgtaca ttatcggcag tcctatcatg tagaagagcc cgatgatgcc gacgcttatg
     4381 ccgccgccgg tcgcgctgct gctcccgccc gacatgatcg ccgcgccgaa gattatcatt
     4441 atcaggccga gggggatgcc gatgacgagg ccgaggccga cgcctatgac ggcctggagc
     4501 ttggcgaggg agaagacccc gacgcgcttg acgatcattt ttgccatgac tgagattctc
     4561 cttccagagg ggttaaggtt cttctaaagg tagaacaggc tcaggcgcgg gacgcggcac
     4621 tcttcgcgca gcgtcttcgc cagaaggttt tcgagcgtct gctcgtaggt ggtgcgctcc
     4681 attcggccgc ggtactgccg gagctgagcc tcggcctccg cgcgcttcgc tacgagagct
     4741 tccggcggga gcgacgagcg aatcgcgcgg tcgagcagcg cctccaagtc cgtgagcgag
     4801 ccttcgagca gttcggcgtc gggccgcgcg gcggcgttga agtcggcctc caactctccc
     4861 agcctcgacg ccgcgcgggc gagagcttcg gtcagaacgt ccccgccggt tctttccgca
     4921 cgcccgacgg ccgcgcggga gagcgcctcc cggctgtctg ccaggtgcgc cgcgatgacc
     4981 tcgcggggga acggcagccc gcgcgtctcg ttcgctcccg gctcgtcttc gccctcggcc
     5041 gtcgcgctcg cgcctcgctg cgactccagc cactcggcga actgcgcctc gacctcttcc
     5101 tggcagtagt agagcgactt gacgctgcgg ttgcgcggcc gcgactcgta tgagtcgaac
     5161 gccgtctcga tgccgcgaag gacgacgtgc agcggcacgc ccatctgctt ccaactgtcc
     5221 atcagcgccc agtccatagg gctcagcaga aggtgcttgc cccggcggcg gacgaaggcg
     5281 tcctcgatct ccgtgaagta gttgaagtag ttcagcggcg ccgcgggccg ctctgcctcc
     5341 gcgcgcgccc cttcggtggt gctcatcgct cgttcgtttg accggagtac gaaagcaggg
     5401 tttcggaagc ttcggaaaga ccggacggcc ccaagcatga acaggcggcg gcgtttagtc
     5461 aagagccagc cgcctggcgt ctgcttcttt cgtggacgag gcgcaggccg tcgagcgtga
     5521 gcgtcttgtc aacgacttcg atgaactcgg aggcggtggc gat
//
LOCUS       DASPKR010000222         2761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1322868, whole genome shotgun sequence.
ACCESSION   DASPKR010000222 DASPKR010000000
VERSION     DASPKR010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2761)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1322868"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            159..761
                     /locus_tag="VD968_06120"
     CDS             159..761
                     /locus_tag="VD968_06120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE13999.1"
                     /translation="MRVLLSLCVACLLLALAPQAARAQKQTASREEAVHAQLQELLAG
                     VGVIVARETLPAAPSRSYREITVAWEADKAAAPAMDDAALEQRRPGRFSRASAPRARV
                     GSLSRQRSLELSPEQLLVVAVDGAGRMKWWSLVPDPRVIRAEAPGPDGVLAGQTLLRE
                     SAELLLAFPDDESVTELRLYHPRPEGGRFTLEPVAAIAAR"
     gene            798..2741
                     /locus_tag="VD968_06125"
     CDS             798..2741
                     /locus_tag="VD968_06125"
                     /inference="COORDINATES: protein motif:HMM:NF021021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M64 family metallopeptidase"
                     /protein_id="HYE14000.1"
                     /translation="MKSPAPPLRAILLLLAVAALGPAAAAEPVETIENNGDPFNRIDV
                     VIVGDGYAAADMEKFRTDVQQFVLAMFDDEPLKEYRRYFNVHRVDVVSAQSGADHPEN
                     GSFRNTAFDATYNCSNIQRLICVNIGKVNTVVSNSLPAGQRELVVVIVNDPVYGGSGG
                     SVVVSSTHTSAVEIVLHELGHTFGMLADEYTSSPPTCVNTVEPVQVNATRATTRDALK
                     WGHWVAASTPIPTTQPTTATPGLYEGARYCTTGLYRPTFNSKMRSLGQPFEQINSEQL
                     VRRVYNFVSPIDSFGPLDRTVTIPRGGQQAFNVATPAPATHGLKLRWLLNGEPLGEAG
                     PALTLAADLPGAGTHLFTLEVWDDTPLVRNDPNQLLRESVTWLVTVGDQIDDTEFFVR
                     QHYRDFLGREPDAAGLEFWANNIYECGADDQCIQERRVNVSAAFFLSIEFQNTGYLVH
                     RFHAATFAGSLPRFQSFQADTAKISAGVVVGQAGWDTKLEENKQAFAREWVERAEVLE
                     KLPAAMTASEFVAALFANAGVSQPGQAEVDAAAAAFGAGGTEGRARALRSVADSGSVY
                     NKQYNSAFVLMQYFGYMRRNPDDPPDTDLRGYQFWLQKMNDFSLRGEDVRNESAALAR
                     VRRAEMVRAFISSIEYRRRFGQP"
BASE COUNT          474 a         1010 c          853 g          424 t
ORIGIN      
        1 aggccggcag aattgacacc gcaccgcgca cgccttaatc tcctccgtgt cggccgaagc
       61 cggcggcccg cccgtccccg actcgcaacg gcccacgccg cggaattttt ccggaacgat
      121 aattcccttc acgtaaacac ctaagaggga cagccgcgat gagagtttta ctgagtttgt
      181 gcgtggcctg cttgctgctc gcgctcgccc cgcaggccgc gcgcgcccag aagcagacgg
      241 cgtctaggga ggaggccgtg cacgcgcagc ttcaagagct tcttgccggg gtcggcgtca
      301 tcgtcgcgcg cgagacgctg ccggcagcgc cctcgcgctc ctaccgggag attaccgtcg
      361 cgtgggaggc cgacaaggca gccgccccag ccatggacga cgccgctctt gaacagagac
      421 ggcccggccg cttctcgcgc gcctctgccc cgcgcgcgcg cgtcggctca ctctcgcgcc
      481 agcgctcgct agagctttcg cccgaacagc ttctcgtcgt cgccgttgac ggagcgggcc
      541 gcatgaagtg gtggagccta gtcccagacc cgcgcgtcat acgcgcggag gcgcccggcc
      601 ccgacggcgt gctggcgggg cagacgcttt tgcgcgagtc cgccgagctt ttgctcgcct
      661 tcccggacga cgaatccgtc acggagcttc gactctacca cccgcgcccc gagggcgggc
      721 gctttacgtt ggagcccgtc gccgcaatcg ccgcgcgcta aactagcagg ttcccccgaa
      781 gcattaaggc aggcaacatg aaatcccccg ccccgcccct cagagcaatt cttctcctcc
      841 tcgccgtcgc ggccctcggg ccggcggccg ccgccgagcc cgttgagacc atcgagaaca
      901 acggcgaccc cttcaaccgc attgacgtgg tcatcgtcgg cgacggctac gcggccgccg
      961 acatggagaa gttccgcacg gacgttcagc agttcgtcct cgccatgttc gacgacgagc
     1021 cattgaagga gtaccgccgc tacttcaacg tccaccgagt tgacgtggtg agcgcgcagt
     1081 ccggggcgga tcaccccgag aacggctcct tccgcaacac ggccttcgac gccacctaca
     1141 actgctcgaa catacagcgg ctcatctgcg tcaacattgg caaggtcaac accgtagtct
     1201 cgaacagcct gccggccggg cagcgcgagc tggtcgtcgt catcgtcaac gaccccgtct
     1261 atggcggctc gggcggctcg gtcgtcgtct cctcgacgca cacctcggcg gtcgagatag
     1321 tgctgcacga gctgggccac accttcggca tgctcgcgga cgagtacacg tcgagcccgc
     1381 ccacctgcgt gaacacggtc gagcccgtac aggtcaacgc cacgcgcgcg accacgcgcg
     1441 acgctctcaa gtggggccac tgggttgcgg cctccacccc catcccgacc acgcagccga
     1501 cgacagccac gcccggccta tacgagggcg cgcgctactg cacgacgggg ctgtaccgcc
     1561 ccacattcaa ctcgaagatg cgctcgctgg ggcagccctt cgagcagata aactccgagc
     1621 agctcgtcag gcgcgtctat aacttcgtct cgcccataga ctctttcggg ccgctagacc
     1681 gcaccgtcac gatcccccgc ggcggtcagc aggccttcaa cgtcgcgacg cctgcgcccg
     1741 ccacgcacgg cctaaagctg cgctggctcc tgaacggcga gccgctcggc gaggcaggcc
     1801 ccgcgctcac gctcgccgca gacctccccg gcgcgggcac gcacctcttc acactcgaag
     1861 tctgggacga cacgccgctc gtgaggaacg accccaacca actgctcagg gagagcgtca
     1921 cttggctcgt gaccgtgggc gaccagattg acgacactga gttcttcgtc cgccagcact
     1981 accgcgactt cctcggccgc gagcccgacg ccgccggcct cgagttctgg gccaacaaca
     2041 tatacgagtg cggcgccgac gatcagtgca tacaggagcg gcgcgtgaac gtctcggccg
     2101 ccttcttcct atcaatcgag ttccagaaca cgggctacct cgtccaccgc ttccacgcgg
     2161 cgaccttcgc cgggagcctg ccgcgcttcc agtcgttcca ggcagacacg gcgaagataa
     2221 gcgcgggagt ggtcgtcggg caggccggct gggacacgaa gctcgaagag aacaagcagg
     2281 cgttcgcgcg cgagtgggtc gagcgcgccg aagtcttaga gaaactgccg gccgcgatga
     2341 cggcctcgga gttcgtcgcc gcgctcttcg cgaacgcggg cgtctcgcag ccggggcagg
     2401 ccgaggttga cgccgccgcc gcggcgttcg gcgcgggcgg gaccgaaggc cgcgcccgcg
     2461 ccctgcgcag cgtcgccgac agcggctcgg tctataacaa gcagtacaac tcggccttcg
     2521 tgcttatgca gtatttcggc tacatgcggc gcaaccccga cgacccgccc gacacagacc
     2581 tgcgcggcta ccagttctgg ctacagaaga tgaacgactt cagcctgcgc ggcgaggacg
     2641 tgcgcaacga gtcggccgcc ctcgcccgcg tgcgccgcgc cgagatggtt cgggccttca
     2701 tctcgtcaat cgagtacagg cgccgcttcg gccagcctta acttgagcgc gggggaaccg
     2761 g
//
LOCUS       DASPKR010000223         4692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_158790, whole genome shotgun sequence.
ACCESSION   DASPKR010000223 DASPKR010000000
VERSION     DASPKR010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4692)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4692
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158790"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..258
                     /locus_tag="VD968_06130"
     CDS             <1..258
                     /locus_tag="VD968_06130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14001.1"
                     /translation="TDTDAISVARAEYAVSRKVLRVTATSTSASATLSVHVTSTGALI
                     GTLANTGGGKHSGAFALPASPRSVTVRSSLGGAASKGVTPK"
     gene            549..1166
                     /locus_tag="VD968_06135"
     CDS             549..1166
                     /locus_tag="VD968_06135"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HYE14002.1"
                     /translation="MSSDLLLARMLGHVTTPDLKRADATDYELSQASSAGDTLAFEEL
                     YSRHSRRVYSLCLRMTANTAEAEDLTQEVFIQLHRKLGSFRGESAFTTWLHRLTVNQV
                     LMHFRRRGIKLEQTADDGDAPVQIVAGTENPNHMPVVDRIALDKAVDQLPPGYRSVFV
                     LHDVEGHEHEEIARMLGCSVGTSKSQLHKARMKLRQLLRQQNPPQ"
     gene            1323..2036
                     /locus_tag="VD968_06140"
     CDS             1323..2036
                     /locus_tag="VD968_06140"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HYE14003.1"
                     /translation="MNCEKCQELLSDYIDGELAARESAAVTAHLAACAACAEASEEFL
                     AIVEAAHGAREQLYDLPNERALWLRIRNTIESDAAAARPAAAAAAAAAPQGFWRRLFV
                     KRWEFTLPQLATGVAALAVAVSLATALGVQYLETERRGEAAVRSRQSIPSPVYPQGYL
                     QPHQASLRYWQQRVELRKASWNPRMRDSFDRSIGVLDQAVNESLTELRENPHDEVAEE
                     MLNSALRDKIELLREFGEQ"
     gene            2157..2954
                     /locus_tag="VD968_06145"
     CDS             2157..2954
                     /locus_tag="VD968_06145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14004.1"
                     /translation="MTGDARNNPCANRTRPRRPAALARACVSVAALLSLLTWLAPGAA
                     AQRRFTREYPTRANVRLHLHNRSGQIEVLAWDKSRIKITATMESGSAKMAPEVSEGGV
                     VIDVRRDNRDDVGDINFKILVPADSTVDISTMSGNIIIRNVRGQMVRANVSTAGDIEL
                     TGIRAYTVVAENTIGNILFDAELLSGGTYELKSTQGDIQLRISAASGFRLMAVAPRTR
                     NIDLNGFADKGQFEFFNDKRKVVGKVGDGGAALSTTNGRGSIVFMPR"
     gene            3037..3942
                     /locus_tag="VD968_06150"
     CDS             3037..3942
                     /locus_tag="VD968_06150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14005.1"
                     /translation="MTKLVRAAALAALFAAAAPPCAAAQSGRPAKPQKGAAPAPPAPL
                     LKRTTTRRETRRLGYGGALTVFGAPEGSLTIEAWDRGEVEVTADIELSAATEEDLTRL
                     AAVNTFMLDEDLNHVRVISVGTHDRKYLKRVARDFPKALVGLPWKIDYRIKVPAAVDL
                     EIYGGRGALTLSGVEGAVRLNAGDSNPASFTLTGGDVEATLRGGPLTVRVPARSWRGR
                     GMSVRLASGDLTVELAAGFSGDVNAEVLRSGRVENTYPGLAPRERTRPTERLLQGRAG
                     QGGAVLSFTVGDGTLRIRQAEAALR"
     gene            3939..4511
                     /gene="dcd"
                     /locus_tag="VD968_06155"
     CDS             3939..4511
                     /gene="dcd"
                     /locus_tag="VD968_06155"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HYE14006.1"
                     /translation="MSIKSDRWIRRMALEHGMIEPFEPGQVKEVEGRRVVSYGTSSYG
                     YDIRCADEFKLFTNINSTIVDPKSFDSKNFVDVKAESVVIPPNSFALARTVEYFRIPR
                     NVLTICLGKSTYARCGIIVNVTPFEPEWEGHVTLEFSNTTPLPAKIYANEGVAQVIFF
                     EAGPDDVCETSYKDRGGKYQKQQGVTLPKL"
BASE COUNT          843 a         1653 c         1535 g          661 t
ORIGIN      
        1 accgataccg acgccatctc ggtcgcgcgc gccgagtacg ccgtctccag gaaagtgctg
       61 cgcgtcacgg cgacgagcac cagcgcctcg gcgaccctga gcgtccacgt cacctcgacg
      121 ggcgcgctca tcgggacgct cgccaacaca ggcggcggca agcactcggg cgcgttcgcc
      181 ttgcccgcga gcccgcgcag cgtcaccgtc cgcagcagcc tcggcggcgc cgcgtcgaag
      241 ggggtgaccc ccaagtaacc cctgcggccc tcggcggcct tacgccggct gcgggcgtag
      301 gttcggcgca accgggtgag cccgcctatg gtagaatccg ccgagtcagg ctctcggtgc
      361 gttaaataag gccgaatttc ggcggtgggg caacgacgcg cggccggggg agcatcacag
      421 tcgcgtgtga acccggtgat tcgccacgag ttatcaggct cgctggcccg ccccgccggg
      481 gcgcacgcca tctctgtgac gggggtctgg cgcttccctt gacggtcaaa gtggaaaggt
      541 gtgagttgat gagcagcgac cttctgcttg cccggatgct gggccacgtg acgacacccg
      601 atctcaagag agcggacgca actgactacg agctgtcgca ggcatcctct gcgggcgaca
      661 cgctcgcctt cgaggagctt tactcgcgcc actcgcgccg ggtctattcg ctctgcctcc
      721 gcatgacggc caacacggcc gaggccgaag acctcacgca ggaagttttc atacagctcc
      781 accgcaagct cgggagcttc cgcggcgagt cggcctttac cacctggctc caccgtctga
      841 cggtcaacca ggtgctcatg cacttccggc ggcgcggcat aaagctcgag cagacggccg
      901 acgacggcga cgcccccgtc cagatagtcg cgggcacgga gaacccgaac cacatgcccg
      961 tcgttgaccg catcgcgctc gacaaggccg tggatcagtt gcctcccggc taccgctcgg
     1021 tcttcgtcct gcacgacgtg gagggacacg agcacgagga gatagcgcgc atgctcggct
     1081 gctcggtagg cacgtcgaag tcgcagctac acaaggccag gatgaagctc aggcagcttc
     1141 tcaggcaaca gaatccccct cagtaggctt ccaagggtgt cgccttcaag gagcccccga
     1201 gggcggccca gcgagaatga caccgacgct ccgtctcccc gacggttaga agtttgaaag
     1261 cggagcgggc cgcgcccgaa ggcgagtgac gagggcgcgt cgggcgcgag aggttagaag
     1321 tcatgaactg cgagaagtgt caggaactgc tcagcgacta cattgacggc gagctcgccg
     1381 cgcgagagtc ggccgcggtg acggcgcacc tcgccgcctg cgccgcctgc gccgaggcga
     1441 gcgaggagtt cctcgcaatc gtcgaggccg cgcacggcgc gcgcgagcag ctctacgacc
     1501 tgcccaacga gcgcgccctc tggctgcgca tacgcaacac catcgagagc gacgccgccg
     1561 cggcacgccc cgcggcagca gcagcggccg ccgccgcgcc gcagggcttc tggcggcgcc
     1621 tcttcgtcaa gcgctgggag ttcaccctgc cgcagttggc gacgggcgtg gcggcgctcg
     1681 ccgtcgccgt gtcgctcgcc accgcgctcg gcgttcagta tcttgaaacg gagcgccgcg
     1741 gcgaagcggc cgtacgaagc cgccagagca tcccctcgcc cgtctatccg cagggctact
     1801 tgcagccgca ccaggctagc ctgcgctact ggcagcagcg cgtcgagctg cgcaaggcga
     1861 gctggaaccc gcgcatgcgc gactcgttcg accgcagcat cggcgtcctc gaccaggccg
     1921 tcaacgagtc tttgaccgag ctgcgcgaga acccgcacga cgaggtcgcc gaggagatgc
     1981 tcaactcggc cctgcgcgac aagatcgagc tgctgcggga gttcggcgag cagtagcggg
     2041 gcgtgcgagc gcccgccgcc gaaggcacaa aagggagagg aaacgccgga gccgcgcccg
     2101 cgccttttgc ccgcaagggg cgcgggcgct tcgccgccgg ggggcagtaa aagagtttga
     2161 cgggagacgc aaggaacaac ccctgtgcta accgaacgcg cccgcgccgg ccggcggcgc
     2221 tcgcgcgggc gtgcgtctcc gtagccgcgc tcctctccct cctcacgtgg ctcgcgcccg
     2281 gcgcggccgc gcagcgccgc ttcacacgcg agtacccgac gcgcgccaac gtccgcctgc
     2341 acctgcacaa ccgctccggc cagatagaag tcctcgcctg ggacaagagc cgcataaaga
     2401 tcacggccac gatggagtcc ggctcggcga agatggcgcc ggaggtgagc gagggcggcg
     2461 tcgtcataga cgttcgccgc gacaaccgcg acgacgtggg cgacataaac ttcaagattc
     2521 tagtccccgc cgactcgacc gtggacataa gcacgatgag cggcaacatc atcatacgca
     2581 acgtgcgcgg ccagatggtg cgcgccaacg tctcgaccgc gggcgacata gagctgacgg
     2641 ggattcgcgc ctacaccgtc gtcgccgaga acaccatcgg caacatcctc ttcgacgccg
     2701 agctcctgag cggcggcaca tacgagctga agtcaacgca gggcgacata cagctccgca
     2761 tctcggccgc ctccggcttc cgcctgatgg ccgtagcgcc ccgcacgcgc aacattgacc
     2821 tcaacggctt cgccgacaag gggcagttcg agttcttcaa cgacaagcgc aaggtcgtcg
     2881 gcaaggtcgg cgacggcggc gcggccctga gcaccacgaa cggccgcggc tccatagtct
     2941 tcatgccccg ctgaaaagcc ctcccctcgc cttacttatt gccgactcgc ccggccttag
     3001 tgtagcctgc aaacgatgaa ggactccttt ccgcccgtga cgaaactcgt gcgcgcggcg
     3061 gcgctcgccg cccttttcgc cgcggccgcg cccccgtgcg ccgccgcgca gagcggcagg
     3121 cccgcgaagc cccagaaggg ggccgcgccc gccccgcccg cgccgctctt gaagcgcacg
     3181 acgacgcggc gcgagacgcg caggctcggc tacgggggcg cgctcacggt cttcggcgcg
     3241 cccgagggct cgctcacgat agaggcttgg gacaggggtg aggtcgaggt gacggccgac
     3301 atagagctga gcgccgcgac cgaggaagac ctgacgcgac tggccgccgt caacaccttc
     3361 atgctcgacg aggacttgaa ccacgtccgc gtcatcagcg tcggcacgca cgaccgcaag
     3421 tacctcaagc gcgtcgcgcg cgacttcccg aaggccctcg tcggccttcc gtggaagatt
     3481 gactaccgca taaaagtccc cgcggccgtt gacctagaaa tctacggcgg gcgcggcgcg
     3541 ctcacgctct cgggcgtcga gggcgccgtc cggctgaacg cgggcgacag caaccccgcg
     3601 agcttcacgc tcacgggcgg cgacgtggag gccactcttc gcggcggccc gctcacggtg
     3661 cgcgtcccag cgcggagctg gcgcggccgg ggcatgagcg tgcggctcgc gagcggcgat
     3721 ttgacggtcg agctggcagc gggcttcagc ggcgacgtga acgcagaagt cctgcgctcg
     3781 ggccgcgtgg agaacaccta ccccggcctc gccccgcgcg agcgcacgcg gcccaccgag
     3841 cggctcctgc aggggagggc cgggcagggc ggcgccgtgc tctccttcac cgtcggcgac
     3901 ggcacgctcc gcataaggca ggcggaggcc gctttgagat gagcatcaag tcggacaggt
     3961 ggattcggcg catggcgctc gagcacggga tgatcgagcc cttcgagccg gggcaggtca
     4021 aggaggtcga gggccgccgc gtcgtctcct acggtacgtc gagctacggc tacgacatac
     4081 gctgcgccga cgagttcaag ctcttcacca acatcaactc gaccatagtt gacccgaaga
     4141 gcttcgactc gaagaacttc gttgacgtaa aggccgaatc cgtagtcatc ccgcccaaca
     4201 gcttcgcgct cgcccgcacc gtcgagtact tccgaatacc gcgcaacgtg ctgaccatct
     4261 gcctgggcaa gagcacttac gcgcgctgcg gcataatcgt caacgtcacg cccttcgagc
     4321 ccgagtggga gggccacgtc acgctggagt tctcgaacac cacgccgctg cccgcaaaga
     4381 tctacgccaa cgagggcgtc gcccaggtca tcttcttcga ggccggcccc gacgacgtgt
     4441 gcgagacctc atacaaagac cgcggcggca agtaccagaa gcagcagggc gtcacactgc
     4501 ccaagctctg acgctcggcc ggcgcgcgga tagggcggcg cgatgaaatg taaacgggcc
     4561 ggcgctcata atcttatgag acggcctacg cgcggccgct gccttctgag gagtgatacc
     4621 gcacatgccc cttcaaaaca ctgtcctcat ccccataagc gtcgagcccc cgccgcctcc
     4681 gtccggcgcg ga
//
LOCUS       DASPKR010000224         4958 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1064395, whole genome shotgun sequence.
ACCESSION   DASPKR010000224 DASPKR010000000
VERSION     DASPKR010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4958)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4958
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1064395"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(193..1740)
                     /locus_tag="VD968_06160"
     CDS             complement(193..1740)
                     /locus_tag="VD968_06160"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-coumarate--CoA ligase family protein"
                     /protein_id="HYE14007.1"
                     /translation="MVFRSPLPDVEIPDLPLTDFVLGGADALGDKPALVDGLSGRAVT
                     YAQLAGAVRRAAAGLARRGLRKGDVLALLSPNVPEFVIAFHAAATLGGVVTPVNPLYT
                     TEEIAKQLRDAGARYLVTVPQLLDKAREATAGLGVEEVFVFGEAEGATPFASLLEGDD
                     APPAVGINPREDVVTLPYSSGTTGVCKGVMLTHRNIVANLAQIKGTGHDWHDDTLICV
                     LPLFHIYGLVAIASHGLWCGATIVTLPRFDFEQVLKTMQDYRVTFAHLVPPVILALAK
                     HPAVGAYDLSALRVIFSGAAPLGAELSRECEERLGCRVIQGYGMTETSPATHISTPER
                     SKPGSVGQCVPNMECRLVSVETGEEVGTNQEGEIYVRGPQVMKGYLNQPEATAATIDD
                     EGWLRTGDIGYADEGGYFFIVDRAKELIKFKGFQVAPAELEAVLLTHPAIADAAVVPS
                     PDAEAGEVPKAFVVVKEGAGLTHEEVMAFVADRVARYKKVRRVEFIEQIPKSPSGKIL
                     RRLLAQR"
     gene            complement(1831..3129)
                     /locus_tag="VD968_06165"
     CDS             complement(1831..3129)
                     /locus_tag="VD968_06165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14008.1"
                     /translation="MARDFDNELDTLLRRHARAGGAVRREAASAHLDADELSAFAENV
                     LPAAARGAAVLHLADCDECRSQAVVLARAAGAGAALEKGAAQPVVSRPGAAEERRPSP
                     FAWLVWLLSPRGLRYMAPVLALSLVGVVTYVALRSRGGDARLERAESARSAAPSAPQA
                     VPEGDGTGAATSGAPSESPAQQPSVNGSAAANTGSGLVARQSTEPTPGVAPAPVAAGA
                     GPAEKEPPPPPTAQQQPGGAAGGGSGSAAAESPAAIRALPTVGRDAPEQSKEDDRGRA
                     KGEEVTRNDYNLPQQNRVKDVQNVETQSPDGGRARKQSPSNNAELAAAAPPKSEREVR
                     RQNRSMSEPRARSAARAGAEADEGAREETRVAAGHRFRRQGGAWVDVNYKPSMSSTGV
                     RRGTEAFRALVADIPEIGRVAEQISGEVIVVVSGRAYRIR"
     gene            complement(3218..4171)
                     /locus_tag="VD968_06170"
     CDS             complement(3218..4171)
                     /locus_tag="VD968_06170"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE14009.1"
                     /translation="MPTDFEQIVREGVGRMLAGAGAAHKTDAAALAARVRATLDKYLL
                     RHRPDASAKEAAGFIDSLHAEELLLVVACERGDDRAWDDMMGRYRPTVLSAARAASAG
                     EAEAEELAESVWAELYGLREREDGRPAGKLAYYSGCGSLGGWLRAVVGQLAVDRHRRS
                     AKLVQTEEASDFDRAAQEEHAEADGWRPSTPPDPESSLAEAEAGRAVESALARAMSEL
                     AGEDRLLVKLYYFDGLRLKEAGAVLGVHEATASRRLTKLHGELRKRVEAILVGERNWT
                     REETARTLSEVARSPTDADLRSMLTAAEAATSVEKRDEAFE"
     gene            4353..>4958
                     /locus_tag="VD968_06175"
     CDS             4353..>4958
                     /locus_tag="VD968_06175"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HYE14010.1"
                     /translation="MLRVTEIFRSIQGESTHAGRPCSFVRLTGCPMRCTWCDSEYTFT
                     GGERVSIDDVMRQVRAFGCQLVEVTGGEPLAQREAFELIRRLCEEGFEVLVETGGYVS
                     TEGLDERASVILDVKCPASGESERNHWPNLERLRADRDEVKFVVAGRDDWDYARAVIE
                     KYDLTERARAVLVSPVWGSTDLKELAELVASSGLDVRMQLQL"
BASE COUNT          708 a         1727 c         1699 g          824 t
ORIGIN      
        1 agaagtgata ataggcggcg cgcaggcacg ataactttca taaaggctcc gatacggtgc
       61 ggctttttta gcttctaaac tatgatttac agcggcggcc ggaggcttcc ccgcccgccg
      121 tctgtttaga cgcgcggggc cttcggctgg ttggaaaagt tggaggggcc tagccggcta
      181 gccggcggcg cgctagcgct gggctaggag gcggcgaagg attttgccgg agggcgattt
      241 cggtatctgc tcgatgaact caacgcggcg aaccttcttg tagcgcgcga cgcggtcggc
      301 cacgaaggcc atgacctcct cgtgcgtgag ccccgcccct tccttgacga cgacgaaggc
      361 tttggggact tcgcctgcct cggcgtcggg gctggggacg acggccgcgt cggctatagc
      421 tgggtgcgtg agcagcacgg cctccaactc ggcgggtgcc acttggaagc ccttgaactt
      481 tataagctcc ttcgcgcggt caacgatgaa gaagtagccg ccctcgtctg catagcctat
      541 gtcgcccgtg cggagccagc cttcgtcgtc tatggtcgcg gccgtcgcct cgggctggtt
      601 caggtagcct ttcatcacct gcgggccgcg gacgtagatt tcgccctcct gatttgtgcc
      661 gacctcttcg cccgtctcga ccgagaccag cctgcactcc atgttcggca cgcactgccc
      721 gaccgagccg ggcttgctcc gctccggcgt cgagatgtgc gtggccgggc tcgtctccgt
      781 catcccgtag ccctgtatga cgcggcagcc cagtcgctcc tcgcactcgc gcgaaagctc
      841 cgcgccgagc ggggccgccc ccgaaaatat caccctgagc gccgagaggt cgtatgcgcc
      901 gacggccggg tgcttcgcca gagcgagtat gactggcggg acgaggtgcg cgaacgtcac
      961 gcggtaatcc tgcatggtct ttagcacctg ctcgaagtcg aagcgcggca gcgtgacgat
     1021 ggtcgcgccg caccataggc cgtggctggc gatggcgacg aggccgtaga tgtggaagag
     1081 cggcagcacg cagatgagcg tgtcgtcgtg ccagtcgtgg cccgtgcctt ttatctgcgc
     1141 caggttggcg acgatgttgc ggtgcgtaag catcacgccc ttgcagacgc cggtcgtgcc
     1201 gctcgaatag ggcagcgtca ccacgtcttc gcgcgggtta atgccgacgg cgggcggcgc
     1261 gtcgtcgcct tcgagcagtg acgcgaaagg cgtcgcgccc tccgcctcgc cgaagacgaa
     1321 cacctcctcg acgcccaggc cggctgtcgc ctcccgcgcc ttgtcgagca gttgcgggac
     1381 ggtgacgagg tagcgcgcgc ccgcgtcgcg cagttgcttc gctatctcct cggtggtgta
     1441 gagcgggttg acgggcgtga cgacgccccc gagggtcgcg gcggcgtgga aggctatgac
     1501 gaactcgggg acgttagggc taaggagcgc gagcacgtcg cctttgcgca ggccccgccg
     1561 cgcaagcccc gccgccgcgc gcctgaccgc cccggcgagc tgcgcgtagg tgacggcgcg
     1621 cccgctcagg ccgtcaacca gcgcgggctt gtcgccgagc gcgtcggcgc cccccagcac
     1681 gaaatcggtg agcggcaagt cggggatttc aacgtctggg agggggcttc ggaagaccat
     1741 gcgcgactcc ttgaaagaag ctgtgagcta ccagcaaggc gagagctgaa agctgattgc
     1801 ttgacgctct taattacgac ttgcgggctt tcagcggatt cggtaagcgc ggccgcttac
     1861 gacgacgatg acttcaccgc ttatctgctc ggcgacgcgg ccgatttcgg ggatgtccgc
     1921 gacgagggcg cggaaggctt ccgtgccgcg gcgcacgccg gtcgaagaca tggaaggctt
     1981 gtagttcacg tccacccacg cgccgccctg cctgcggaag cggtggcccg cggccacgcg
     2041 tgtctcctcg cgcgcccctt cgtcagcctc ggcgccggcg cgcgcggcgc tacgcgcgcg
     2101 cggctcgctc atcgagcggt tctgcctgcg cacctcgcgc tccgacttcg gcggcgccgc
     2161 ggcggcaagc tccgcgttgt tagagggcga ctgcttgcgc gcccgcccac cgtcgggcga
     2221 ctgcgtctca acgttctgta cgtccttcac gcggttctgc tgcgggaggt tgtagtcgtt
     2281 acgcgtgacc tcttcgccct tcgctcggcc gcggtcgtct tccttcgact gctcgggcgc
     2341 gtcgcgcccc acggtcggca acgcgcgtat cgcggcgggc gattccgcgg cggcagagcc
     2401 cgaaccgcct ccggccgccc cgcccggctg ctgctgggcc gtgggaggag gcgggggttc
     2461 cttctcggcc ggccctgcgc ccgcggcgac gggcgcgggc gccacgccgg gcgtcggctc
     2521 tgtgctctgc cgcgccacga ggcccgagcc cgtgtttgcc gcggccgagc cgttaacaga
     2581 aggctgctga gccgggctct cgctcggcgc gccgcttgtt gcggcccccg tgccgtcgcc
     2641 ctccggtact gcctgcgggg cggacggcgc ggcgcttctg gcagactcag cccgttcgag
     2701 ccgcgcgtcg ccgccgcgcg agcgcagcgc gacgtaggtg acgacgccga cgagcgacaa
     2761 cgcgagcacg ggcgccatgt agcgcagccc gcgcgggctc aaaagccaca cgagccatgc
     2821 gaacggggac gggcggcgct cctccgcggc ccccgggcgg gagacgacgg gttgagcggc
     2881 gcccttctcc aaagcggccc cggcgcccgc cgcgcgcgcg agcacgacgg cctgcgaacg
     2941 gcactcgtcg cagtcggcga ggtgtagcac ggccgcgccg cgcgcagccg ccggcagcac
     3001 gttctcggcg aaggcgctca actcgtccgc gtcgagatgg gccgaggcgg cttcgcggcg
     3061 cacggccccg cctgcgcgcg cgtggcgccg tagcagggtg tcgagctcgt tgtcgaagtc
     3121 tcttgccatc tctaaacgtc agaacttaaa actcgcgccg caagggcgcc cggtcgttga
     3181 acgcgcgcgg gggcgcgaac ttgcgccggg agcgcagtca ctcgaaagcc tcgtcgcgct
     3241 tctcgacgga cgttgccgcc tcggccgccg tcagcatcga gcggaggtct gcgtccgtcg
     3301 gcgagcgcgc gacctctgag agcgtgcgcg ccgtctcctc cctagtccaa tttcgctcgc
     3361 ccacgagtat cgcctcgacg cgcttgcgaa gctcgccgtg cagcttcgtc agcctgcggc
     3421 tcgcggtcgc ttcgtgcacg cccagcaccg cccccgcctc tttcaaacgc agcccgtcga
     3481 agtagtagag cttgacgagc aggcggtctt cgccagcgag ctccgacatc gcgcgggcga
     3541 gcgccgactc gaccgcgcgg cccgcttcgg cctccgcgag agagctttcc gggtcgggcg
     3601 gcgtgctcgg gcgccagccg tccgcctccg cgtgctcttc ctgcgcggcg cggtcgaagt
     3661 ccgaagcctc ttcggtctgc acgagcttcg ccgagcgcct gtggcggtca acggctaatt
     3721 gacccacgac ggcgcgcagc cagccgccga ggctcccgca gcccgagtaa taagcgagct
     3781 tgccggcggg cctgccgtct tcacgctcgc gaaggccgta aagctcggcc cagaccgact
     3841 cggcaagctc ttccgcctcg gcctcccccg cgctcgccgc gcgcgccgcc gagagcaccg
     3901 tcgggcggta acgccccatc atgtcgtccc aagcgcggtc gtcaccgcgc tcgcaagcga
     3961 cgacgagcag aagctcctcg gcgtgcagcg agtctatgaa ccccgcggcc tccttcgcgg
     4021 aagcgtcggg gcgatggcgc agcaggtact tgtcgagcgt ggcgcgtacg cgcgcggcga
     4081 gcgccgcggc gtctgtcttg tgggcggcgc ccgcgcccgc cagcatgcgc ccgacgccct
     4141 cgcgcacgat ttgttcaaag tctgtcggca tccaccatcc gccgtagcca agatgccccg
     4201 ccggccggcc catgctacca cgaacgcgca cgcgcgggct cacaacttcc gctttgacac
     4261 tccaaagggg ctgggatatg ttcaagcggt cagcattcgg ctttcagctc ctgtttttgc
     4321 tgaaagctga ccgctgactg ctgaaagctc ccatgctccg cgtcaccgaa atcttccgct
     4381 cgatccaggg cgagtccacg cacgccgggc gcccgtgctc gttcgtgcga ctcacgggct
     4441 gccctatgcg ctgcacctgg tgcgacagcg agtacacctt cacgggcggc gagcgcgtct
     4501 ccatagacga tgtgatgcgg caggtgcgcg ccttcggttg ccaactcgtc gaagtgacgg
     4561 gcggcgagcc gctcgcgcag cgggaggcgt tcgagctgat aaggcgcctc tgcgaggagg
     4621 gcttcgaggt gctggtcgag accggcggct acgtctcgac cgaggggctg gacgagcgcg
     4681 cctcggtcat actcgacgtt aaatgccccg cctccggcga gtccgagcgc aaccactggc
     4741 cgaacctcga gcgcctgcgc gcagaccgcg acgaggtcaa gttcgtcgtc gccggccggg
     4801 acgactggga ctacgctcgc gcggtgattg aaaagtacga cctgacggag cgagcgcgcg
     4861 ccgtgctcgt ctcgcccgtc tggggctcga cggatttaaa ggagctggcc gagctggtcg
     4921 cgtccagcgg ccttgacgtt cgcatgcagt tgcagctt
//
LOCUS       DASPKR010000225         5887 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_805409, whole genome shotgun sequence.
ACCESSION   DASPKR010000225 DASPKR010000000
VERSION     DASPKR010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5887)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5887
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_805409"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1185)
                     /locus_tag="VD968_06180"
     CDS             complement(<1..1185)
                     /locus_tag="VD968_06180"
                     /inference="COORDINATES: protein motif:HMM:NF015535.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P1 family peptidase"
                     /protein_id="HYE14011.1"
                     /translation="MTTTKTSRAALTLLLSFVPVMSQTEIRGGRPRARDVGLTVGVMR
                     PGRLNAITDVPGVLVGHATLVRGDSVRTGVTAVVPHGGNLFREKVPAAVFVGNGFGKL
                     MGSTQVGELGELETPILLTSTLNVPRVADALMDWMLALAGNEDVRSVNPVVAETNDGF
                     LNDIRGRHVGREEVFAALKGARGGEVGEGSVGAGTGTVAFGFKGGIGTSSRVLPAARG
                     GYTVGVLVQTNFGGVLTVGGAPVGRELGKYYLREELEASPRSSVSQTSDRADGSVIIV
                     VATDAPLDSPALRRLAARAMLGLARTGSPSTHGSGDYVIAFSTAPQLRLRHGETAMRR
                     VELLPNEALSPLFLACVEATEEAIYNSLFRATTVRGRDGNTAEALPLDKTIEILRKYK
                     AIK"
     gene            complement(1191..1961)
                     /locus_tag="VD968_06185"
     CDS             complement(1191..1961)
                     /locus_tag="VD968_06185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14012.1"
                     /translation="MSSPAQAQGSAARRRGTAPLLRPSNVLQRLAEWKKARPRASARS
                     LARRANAMLAREGLDYIFNACDIVEANRSRALRVADAETGRLVFDYTFEGARGARFPV
                     RLDAGDHAGMCGECFVAVPALRVTPREMVAVLGGRARRLLRPRGFSLDEAHLVGPDLK
                     TVLRTWQMPYQTIPVGVSADGRKLYLDFYEDLGLGELALELSDDGRPRFVLREEVTGP
                     EGEWISDFPEDPENAYLSFLRFRRGGGSHVVRFSGPCT"
     gene            complement(2085..2624)
                     /locus_tag="VD968_06190"
     CDS             complement(2085..2624)
                     /locus_tag="VD968_06190"
                     /inference="COORDINATES: protein motif:HMM:NF021505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2231 domain-containing protein"
                     /protein_id="HYE14013.1"
                     /translation="MESRAKILGHPAHQMLIPFPFGLLATAAVFDIIYLFTGDAATSD
                     QMALVAFWMIAAGIVGGLAAAPFGVIDYLAIPKGTRARFIGMTHGLGNVVVLLLFAAS
                     LWLRYTAPAVALTRRPTTAALALSFAGFALAGLTGWLGGELVDRLGVGVDDGAHLDAP
                     NSLSGRPASEKAAAPGRAV"
     gene            2801..3430
                     /locus_tag="VD968_06195"
     CDS             2801..3430
                     /locus_tag="VD968_06195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14014.1"
                     /translation="MGEKKGAGGGGDDKAELRRQMEEARESISETVAEIKAVVSHEYE
                     EVREKVETVKEGVSEVLDWREQFERNPVVWGAGAVSVGILIGIGLANVFDEDDPAGGG
                     RRKSKQRGPGSHILSELTGLADAVMPTISGKIKELFGLDLGEYLRTERERRSRAARTL
                     ASAPKRGAGKGAAKKRGTGKKGSGRKGPAGKKQGAGKRGARARKAPARA"
     gene            complement(3543..>5887)
                     /locus_tag="VD968_06200"
     CDS             complement(3543..>5887)
                     /locus_tag="VD968_06200"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HYE14015.1"
                     /translation="YSDDGQKSCGFCHWDGRQDGCQWNVAANAVGGTKVCPQNKDISD
                     NWPEWYEGLNNDFMAYASACNGEVLLGERGPTPLFPQAKAEDRFKAREEYVLRKTEED
                     SRAVGRDDLSGKAFKVGYYDMAYLQILWSQNEVRRLPSPLGQFPEDEEEAAKVERGKE
                     IFTKKVSQGGAGCADCHHNGNKFTNGVLDDTFQDFNIHEPGVISETTVDGDGPFFRPE
                     NDYFFVRFGPPQDVGTPQNFSSRNTKHLRTFWDAVPRYLHHGFAHTFREVILAPDSPH
                     LRPGERGFNFRTVRSDHRRGRNNLPTEVPITVADRTGALAGDGMGPVLVSLDSPTVVE
                     NGKPQIDRLGTNNLAPLVSGGQINSALAASGVRVIKDTHGKTSHLSAADIDALEAYLF
                     SLSMSRPLDSSSGSGGSSGSGNSGSGTTAARAQFVTADLKVAESAGSATFEVARSGDL
                     SSEATVEYQTTDFSASDRSDYTAARGTLRFAPGEATKPVTVLLTDDAIVEQDEQISVS
                     LSSPSGCSLGETASAMLTVVDNDTAASAGNPVDDPTFFVRQHYHDFLNREPDDGGLRF
                     WSGQLAECGTDVGCIEAKRINVSAAFFLSIEFQQTGYFVERLYKASYGNRPSMAEFMP
                     DTQEAGRGLVVGVAGWQQKLEENKRAFVEAWAARPAFKQAYDGMTNEQFVTALMANAG
                     LGSNAQLRDELVAGLNGGSLTRGAALRRVAEDADFARREFNPAFVMMQYFGYLRRDPD
                     DGGFRFWLSKLEQFGGNYIEAEMVKAFISSIEYNQRFAGQ"
BASE COUNT          923 a         1941 c         2115 g          908 t
ORIGIN      
        1 cttgatggct ttgtatttcc tcagaatctc tatcgtctta tcgaggggga gggcttcggc
       61 ggtgttgccg tcgcgccctc tgaccgtcgt cgcgcggaaa agggagttgt agatcgcctc
      121 ttcggtggcc tcgacgcagg caaggaagag gggcgagagc gcctcgttag gcagaagctc
      181 gacgcggcgc atggccgtct cgccgtggcg caggcggagc tgcggtgcgg tcgagaaggc
      241 tatgacgtag tcgccgctgc cgtgagtgga gggcgagccg gtgcgcgcga gccctagcat
      301 cgcgcgcgcg gcgaggcggc gcagcgccgg agagtcgagc ggcgcgtccg tcgcgacgac
      361 gatgatgacg gagccgtccg cgcggtcgga agtctgtgag acggaagagc ggggcgaagc
      421 ctcaagctct tccctcaaat aatacttccc caactcgcgg ccgacgggcg cgccgccgac
      481 ggtgagcacg ccgccgaagt tcgtctgcac cagcacgccc accgtgtagc cgccgcgcgc
      541 ggcgggcagc acgcgcgaag aggtgccgat gccgcccttg aaaccgaagg cgacagtgcc
      601 ggtgccggcg ccgaccgagc cctcgcccac ctcgccgccg cgcgcgccct tgagtgcggc
      661 gaagacctcc tcgcggccga cgtgccggcc gcgtatgtcg ttcaggaagc cgtcgttcgt
      721 ctcggccacg acggggttga ccgagcgcac gtcctcgttg ccggctagcg cgagcatcca
      781 gtccatgagc gcgtcggcga cgcgcggcac gttgagcgtg ctcgtcagaa gaatcggcgt
      841 ctccagctcg cccagttcgc ccacctgcgt cgagcccatg agcttgccga agccgttgcc
      901 gacgaagacg gcggccggca ccttctcgcg gaagaggttg ccgccgtgcg ggacgacggc
      961 cgtcacgccc gtccgcacgg agtcgccgcg cacgagcgtc gcgtggccga cgagcacgcc
     1021 gggaacgtcc gtgatggcgt tgagccttcc ggggcgcatc acgccgaccg tgaggccgac
     1081 gtcgcgcgcg cgggggcgcc cgccgcgaat ctccgtctgt gacatgacgg ggacgaagct
     1141 tagcagaagg gtgagggccg cgcgggaagt ttttgtcgtc gtcatcatct tcaggtgcag
     1201 gggccgctga agcggactac gtgcgagccg ccgccgcggc ggaagcgcag gaacgagagg
     1261 taggcgttct cagggtcttc ggggaagtca cttatccact cgccctccgg ccccgtgacc
     1321 tcctccctca agacgaagcg gggccgcccg tcatctgaca gctccagcgc cagctctccg
     1381 aggccgaggt cttcgtagaa gtcgaggtag agcttgcggc cgtccgccga gacgcctacg
     1441 gggattgtct ggtaaggcat ctgccacgtg cgcaggactg ttttgaggtc tgggccgacg
     1501 aggtgcgcct cgtcgaggga gaagccgcgc gggcgcagca gcctgcgcgc gcgcccgccg
     1561 aggactgcga ccatctcgcg cggcgtgacg cgcaaggcgg ggactgcgac gaagcactcg
     1621 ccgcacatgc cggcgtggtc gcccgcgtcg agccgcacgg ggaagcgcgc gccccgcgcg
     1681 ccctcgaacg tgtagtcgaa gacgagcctc ccggtctcgg cgtcggcgac tcggagcgcg
     1741 cgggagcggt tggcctcgac gatgtcgcag gcgttgaaga tgtagtcgag cccttcgcgc
     1801 gcgagcatcg cgttggcgcg ccgggcgagc gagcgcgccg acgcgcgcgg ccgcgccttc
     1861 ttccactcgg ccagcctctg aaggacgttc gaggggcgga gcagcggtgc cgtcccccgg
     1921 cgtcgcgccg ccgagccctg cgcctgcgcg ggggaactca aagacgccgc cagcgcgagc
     1981 agcagcgccg ccgtcagccc cccgcgcttc cgcgcggaat cgtttcttcg tctccccttc
     2041 acggagggga ttatacgacg gccggcgcgg gcgggccgaa agacttaaac cgccctgccc
     2101 ggcgctgccg ccttctcgct cgcggggcgg cccgagagcg agttgggggc gtctaggtgt
     2161 gcgccgtcgt caacgcccac gccgaggcgg tcaaccagct cgccgccgag ccagcccgtc
     2221 aggccggcga gcgcgaagcc cgcgaacgag agcgcgagcg ccgccgtcgt gggacggcgc
     2281 gtgagcgcga cggccggcgc cgtgtagcgc agccagaggc tcgccgcgaa cagcagtagc
     2341 accacgacgt tcccgagccc gtgcgtcatg ccgatgaagc gcgcccgcgt ccccttcggt
     2401 atggcgaggt agtcaatcac cccgaagggc gcggccgcca gcccgccgac gatgcccgcc
     2461 gcgatcatcc agaaggccac gagcgccatc tggtcggacg tggcggcgtc gccggtgaaa
     2521 aggtagatga tgtcgaagac ggccgccgtc gccagcagcc cgaacgggaa gggtatgagc
     2581 atctggtgcg ccggatgccc tagaatcttg gccctgctct ccatgacagt ttcctcctca
     2641 cccacgggat tcaacgccaa aaatttgtcc ccccgttgac gttagtcttg agcgggagtc
     2701 acgggcggcg ctcccgcggc gcggggcgcg tggtgtatcg ttgggcgcaa gggcgagggt
     2761 tttaggggag atcaaggaac ttcggaagga gccgcagggg atgggcgaga agaagggcgc
     2821 gggaggcggc ggcgacgaca aggccgagct gcgccgtcag atggaggagg cgcgcgagtc
     2881 cataagcgag accgtcgcgg agataaaagc ggtcgtctcg cacgagtacg aggaagtgcg
     2941 cgagaaggtc gagaccgtca aggagggcgt gagcgaggtg ctcgactggc gcgagcaatt
     3001 cgagcgcaac cctgtcgtgt ggggcgcggg cgccgtctcc gtcggcatac tcatcggcat
     3061 cggcctcgcg aacgtcttcg acgaggacga ccccgcgggc ggcggccgcc gtaagtcgaa
     3121 gcagcgcggc cccggctcgc acattttgag cgagctgacg ggcctcgcgg acgccgtgat
     3181 gccgaccatc tccgggaaga ttaaagagct gttcggcctg gacctcggcg agtacctgcg
     3241 cacggagcgc gagcgccgct cccgcgcggc ccgcacgctc gcctccgcgc ccaagcgcgg
     3301 cgccgggaag ggcgcggcga aaaagcgcgg caccggaaag aagggtagcg ggcgcaaggg
     3361 cccggccggc aaaaaacagg gcgccggcaa gcgcggcgcg cgtgcgcgca aagcccctgc
     3421 gagagcctag aactttaccg cgagccgcgg cagcagctcg gaagagatta gccgtgggtg
     3481 agccagagtc ggtcgcgcct ctggctcacc cacggctagt tttcgcggcc cctgccgggg
     3541 cctcactgcc cggcgaagcg ctggttgtac tcgatggacg agatgaaggc tttaaccatc
     3601 tcggcctcga tgtagttgcc gccgaactgt tcgagcttag agagccagaa gcggaagccg
     3661 ccgtcgtcgg ggtcgcggcg caggtagccg aagtactgca tcatcacgaa ggccgggttg
     3721 aactcgcggc gcgcgaagtc ggcgtcctcg gccacgcgcc ttaacgccgc gccgcgcgtg
     3781 agcgagccgc cgttcaagcc ggcgaccagt tcgtcccgga gttgcgcgtt cgagccgagc
     3841 cccgcgttcg ccatgagcgc cgtgacgaac tgctcgttcg tcatcccgtc gtaagcctgt
     3901 ttgaaggcgg gccgcgccgc ccatgcttcg acgaaggcgc gcttgttctc ttcgagcttc
     3961 tgctgccacc cggcgacccc gacgacgagg ccccgccccg cctcctgcgt gtcgggcatg
     4021 aactctgcca tagaggggcg gttcccgtaa gaagccttgt agagccgctc gacgaagtag
     4081 ccggtctgct ggaactctat ggagaggaag aaggccgcag agacgtttat gcgcttcgcc
     4141 tctatgcagc cgacgtctgt gccgcactcc gcgagctggc ccgaccagaa gcgcaggccc
     4201 ccgtcgtcgg gctcgcggtt gaggaagtcg tggtagtgct ggcggacaaa gaacgtgggg
     4261 tcgtcaacgg ggttgccggc cgaggcggcg gtgtcgttgt caacgaccgt gagcatcgcg
     4321 ctcgccgtct cgcccagaga gcagcctgac gggctcgaca gcgagacgct tatctgctcg
     4381 tcctgctcga ctatcgcgtc gtccgtgagc agaaccgtga cgggcttcgt cgcctcgccc
     4441 ggcgcgaacc ggagcgtccc gcgcgccgcg gtgtagtcgg agcggtcgga ggcgctgaag
     4501 tcggtcgtct ggtactcgac cgtggcctcg cttgacaggt cgccggagcg cgcgacctcg
     4561 aaggtggcgc tgccggcgct ctccgccacc ttcaagtcgg ccgtcacgaa ctgcgcgcgc
     4621 gcggccgtcg tgccggaacc cgagttgccg ctccccgaac tcccgccaga gcccgacgag
     4681 gagtcgagcg gccgcgacat cgagagcgag aagaggtagg cttcgagcgc gtctatgtcc
     4741 gcggccgaca ggtgcgaagt cttgccgtgc gtgtctttaa tcacgcgaac gcccgacgcg
     4801 gcgagcgcgg agttgatctg cccgcccgag acgagtggcg cgaggttgtt ggtgccgagc
     4861 cggtctatct gcggtttgcc gttctcgacc acggtggggc tgtccaggct gaccaggaca
     4921 ggccccatgc cgtcgcccgc gagcgcgccc gtgcggtcgg ccacggtgat cgggacttcg
     4981 gtcgggaggt tgttgcggcc gcgccggtgg tctgagcgga cggttcggaa gttgaagccg
     5041 cgctcgcccg gccggaggtg cggcgagtcg ggcgcgagta tgacttcgcg gaacgtgtgc
     5101 gcgaagccgt ggtgcaggta tcgcgggacg gcgtcccaga aggtgcgcag gtgcttggtg
     5161 ttccgcgacg agaagttctg cggcgtgccg acgtcctgcg gcgggccgaa gcgcacgaag
     5221 aagtagtcgt tctcggggcg gaagaacggg ccgtcgccgt caacggtcgt ctcggagatg
     5281 acgcccggct cgtgtatgtt gaagtcctgg aacgtgtcgt ccagcacccc gttagtgaac
     5341 ttgttcccgt tgtggtggca gtcggcgcag cccgcgccgc cctggctaac cttcttcgtg
     5401 aaaatctcct tgccgcgctc aactttggcg gcctcctcct cgtcctcggg gaactgcccc
     5461 agcggcgagg gcagccgcct cacctcgttc tgcgaccaga ggatttgcag gtaggccatg
     5521 tcgtagtagc cgaccttgaa agccttgccc gaaaggtcgt cgcggccgac ggcgcgcgag
     5581 tcctcctcgg tcttcctgag cacgtactcc tcgcgcgcct tgaagcggtc ttccgccttc
     5641 gcctgcggga agagcggcgt cgggcccctc tcgccgagca agacctcgcc gttgcaggcc
     5701 gaggcgtagg ccatgaagtc gttgttcagg ccctcgtacc actcgggcca gttgtcggag
     5761 atgtccttgt tctgcgggca gaccttcgtg ccgccgacgg cgttggcggc gacgttccac
     5821 tggcagccgt cctgccggcc gtcccagtgg cagaagccgc aggacttctg cccgtcgtcc
     5881 gagtagg
//
LOCUS       DASPKR010000226         3073 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1064613, whole genome shotgun sequence.
ACCESSION   DASPKR010000226 DASPKR010000000
VERSION     DASPKR010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3073)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3073
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1064613"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2138
                     /locus_tag="VD968_06205"
     CDS             <1..2138
                     /locus_tag="VD968_06205"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HYE14016.1"
                     /translation="PVRPGASVTVQPRGNRLDLVVSGGQGGALNVENFETGRQAEEGG
                     EEERDGRRPRARAAARGTAAPTRPREMPSQASRAESPQPSGRHDKKERGTQTDAEHAA
                     GGAPKGATQPAEQPVAAGAGGDAPPQQEASAVARASEPEVLIAPAQAAAAEGVSVGSL
                     LFSLPSLLGMLGLALLGAVLFVIRRRRSGEAEEDLSLPESGKDEARQEKGGRRRADAA
                     SGLTPKSIPVFDQFKGDRRKSSVTVPFERRRAGAGAEDEATRQQRLEGAQRSGDSVES
                     RLLSPAVPSVLFGAYRIEQEVGRLVQGLSHSIEVLSSRAPDDRRAIEASLIKAMRSPD
                     VDEDGQRRARMALEDYGFVARECASLLLSHESFERATAARTLGEMKSGHALPFLTESL
                     YDADPVVLTEAVQSLGELGLPSAIGALLDVARRHPEIPASILEPALTACSVETIAMPW
                     MAPAEGRAFAEGAEEFTGEIESLEPAARYEELPEWIEDESLASALERLDDEDADSRVL
                     SAQHLAQFQVRRAVEALSALAMRDPEAAVRAAAATSLGVINHESVFVPVLVSLADESR
                     EVRAAAARALSRLSFDRADAYVRVLETAGAETLSEVAHACVKAGLASQAISRLASEDR
                     RQAYEAFSLLSLVVKAGETQPVLDTVECHRDTEVRLACIRLLGLSYQPELGNRLMAIA
                     DNGGVPEKVRLAILEVVGSAVQQEQPVAN"
     gene            2258..>3073
                     /locus_tag="VD968_06210"
     CDS             2258..>3073
                     /locus_tag="VD968_06210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14017.1"
                     /translation="MRFKAFTSLLAGLLFLLLAWLPGGDAHAQRRRPARPAQQQTGDG
                     SGAQAPDRTKRVFVGRGADGAQGSRVTIKSDDTLNDYSAYRSGDRFYVVLPKADASAV
                     ARGGSGRGYSDMQVQQRGDNVVLSYRVQPGAKPRVEQKFNRLDVIFDVQDGGAQQPAQ
                     GGQQAAESRPAQQQQAPASSAPSNTSTPQTAAQPQQQAPAGRTPAEAAAAQQQQQQQA
                     DAAQAQQPGAEQPLTADAAAQQAQSPAASPESAAPAPQEVAQAEPPKSAAPITV"
BASE COUNT          460 a         1137 c         1094 g          382 t
ORIGIN      
        1 tccccgtccg tccgggcgcg agcgtgaccg tgcagccgcg cggcaaccgc ctcgacctgg
       61 tcgtgagcgg cgggcagggc ggcgccttga acgtcgagaa tttcgagacg ggcaggcaag
      121 cggaagaggg cggtgaggaa gagcgcgatg gcaggcgccc gcgcgcccgc gcggctgcgc
      181 gggggacggc cgcgccaacg cgcccgcgcg agatgccgtc gcaggcttcg cgcgcggagt
      241 cgccgcagcc ctcgggccgc cacgacaaga aagagcgggg cacgcagact gacgcggagc
      301 acgcggccgg cggcgcgccc aagggcgcga cacagcccgc cgagcagccc gtcgcggccg
      361 gcgcgggcgg cgacgccccg ccgcagcagg aagcatctgc cgtcgcgcga gcgagcgagc
      421 cggaggttct gattgcgccc gcgcaggctg cggccgccga gggcgtgagc gtgggctcgc
      481 tcctcttctc gctgccttcg ctcctcggca tgctggggct cgcgcttctc ggcgcggtgc
      541 tcttcgtcat acgcaggcgc cgcagcggcg aggccgaaga agacctttcg ctgccggagt
      601 cgggcaagga cgaggcccgg caagagaagg gcggcaggcg gcgcgccgac gccgcgtcgg
      661 gcttgacgcc taagtccatc cccgtcttcg accagttcaa gggcgaccgc cgcaagtcga
      721 gcgtcactgt gcctttcgag cgccgcaggg ccggcgccgg cgccgaggac gaggcgacga
      781 ggcagcagag gctcgaaggc gctcagcgct cgggcgactc ggtggagtcg aggctcctga
      841 gcccggccgt cccgtcggtg ctcttcggcg cgtaccgcat cgagcaggaa gtcggccgcc
      901 tagtgcaggg cctgtcgcac agcatcgagg tgctctcgtc gcgcgcgccg gacgaccgcc
      961 gcgccataga ggcttcgctc atcaaggcga tgcgctcgcc cgacgttgac gaggacgggc
     1021 agaggcgcgc gcgcatggcg ctcgaggact acggcttcgt cgcgcgcgag tgcgcttcgc
     1081 tgctgctcag ccacgagagc ttcgagcgcg cgacggccgc gcgcacgctc ggcgagatga
     1141 agtcgggcca cgcgctgccg ttcctgaccg agtcgctcta cgacgccgac ccggtcgtgc
     1201 tcacggaggc ggtgcagagc ctcggcgagc tggggctgcc ctcggccatc ggcgctctcc
     1261 tcgacgtggc acgccgccac ccggagattc ccgcctcgat attggagccg gcgctcacgg
     1321 cctgctcggt cgagaccata gcgatgccct ggatggcccc ggccgagggg cgcgcctttg
     1381 ccgaaggcgc ggaagagttc acgggcgaga tagagtctct ggagcccgcc gcccgttacg
     1441 aggagctgcc ggagtggata gaggacgagt cgctcgcctc ggcgctcgaa aggctcgacg
     1501 acgaggacgc cgactcccgc gtgctctcgg cccagcacct cgcgcagttc caggtgcggc
     1561 gggccgtcga ggccctctcc gccctcgcca tgcgcgaccc ggaggcggcc gtccgcgccg
     1621 ccgcggccac tagcctcggc gtcatcaacc acgagtccgt cttcgtcccc gtcctggtga
     1681 gcctcgccga cgagtcgcgc gaggttcgcg cggccgcagc ccgcgccctc tcgcggctga
     1741 gcttcgaccg cgccgacgct tacgtccgcg tgttggagac ggccggcgcc gagacgctct
     1801 ccgaagtggc gcacgcgtgc gtcaaggcgg gcctcgcctc gcaggccata agccgcctcg
     1861 cgagcgaaga ccgccgccag gcttacgagg cgttctcgct cctctctctc gtcgtcaagg
     1921 ccggcgagac gcagccggtg ctcgacacgg tagagtgcca ccgcgacacg gaagtccgcc
     1981 tcgcctgcat aaggctcctc gggctctcct accagccgga gctgggcaac cgcctgatgg
     2041 cgattgccga caacggcggc gtccccgaga aggtgcgcct cgccattctc gaggtggtcg
     2101 gtagcgccgt gcagcaggag cagccggtcg cgaactaaac ggatggtgac aaggggctag
     2161 cccgtattgc ataatggcgc tgccaaaggc ccgcgtcgcc ccgattccgg acaactcgtg
     2221 ccatgccctg aactcttacc cacaggccag aagtcacatg cgattcaaag ctttcacgtc
     2281 gctcctcgcg gggctgctct tcctcctact cgcatggctg ccgggcggcg acgcccacgc
     2341 gcagcggcgc cggcccgcgc gccccgcgca gcagcagacg ggcgacggct cgggcgcgca
     2401 ggcgcccgac cgcaccaagc gcgtcttcgt agggcggggg gccgacggcg cgcaagggtc
     2461 gcgcgtcacc atcaagtccg acgacacgct taacgactac tcggcctacc gcagcggcga
     2521 ccgcttctac gtcgtgctgc cgaaggcgga cgcatcggcc gtcgcgcgcg gcggctcggg
     2581 gcgcggttac tccgacatgc aggttcagca gcgtggcgat aatgtcgtcc tctcctaccg
     2641 cgtgcagccc ggcgccaagc cgcgcgtcga gcagaagttc aaccgcctcg acgttatctt
     2701 cgacgtgcag gacggcggcg cccagcagcc cgcgcagggc ggccagcagg ccgccgagtc
     2761 gaggccggcg cagcagcagc aggcgcccgc gagcagcgcg ccttcgaaca cctctacgcc
     2821 ccagacggcc gcgcagcctc aacagcaagc gcccgcgggc cgcacgccgg ccgaagccgc
     2881 ggccgcgcaa cagcagcagc aacagcaggc cgacgcggcg caggcgcagc agcccggcgc
     2941 cgagcagccg ctgacggccg acgcggccgc gcagcaagcg cagtctcccg cggcttcgcc
     3001 ggagtcggcc gcgcccgccc cgcaggaggt cgcgcaggcc gagccgccca agtccgccgc
     3061 ccccatcacc gtc
//
LOCUS       DASPKR010000227         3950 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1580179, whole genome shotgun sequence.
ACCESSION   DASPKR010000227 DASPKR010000000
VERSION     DASPKR010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3950)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3950
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1580179"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..215)
                     /locus_tag="VD968_06215"
     CDS             complement(<1..215)
                     /locus_tag="VD968_06215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14018.1"
                     /translation="MTGRVLVLNASYEPVNVCTERRAVVMIFKGIARMEEHNGHMLHS
                     ARITMHAPSVIRLVEYIHIPYKSRSLSR"
     gene            complement(337..1293)
                     /gene="pip"
                     /locus_tag="VD968_06220"
     CDS             complement(337..1293)
                     /gene="pip"
                     /locus_tag="VD968_06220"
                     /EC_number="3.4.11.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR01249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0030163 - protein catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl aminopeptidase"
                     /protein_id="HYE14019.1"
                     /translation="MSRMKELYPPIEPFDTGRLQVSPVHTLYYEQVGNPDGRPAVFLH
                     GGPGGGLINDYRRFFDPAAYRVVLFDQRGSGQSTPHASLEENTTWHLVEDLEKLREKL
                     GIESWHVFGGSWGSTLSLAYAETHPGRVRSLTLRGIFLCRPKEIRWFYQEGASWIFPD
                     VWEEYEKVIPEGERGDFVSAYYRRLTSEDEAVRLEAARAWSVWEGSTSKLLFDYAMID
                     RFAEPEFALAFARIECHYFMNNAFFSTDNYLIENVGKIRHIPAIIVQGRYDVVCPMQS
                     AWELHRAWPEADLRVIPDSGHSATEPGTISALVDATDKFKTL"
     gene            complement(1360..2106)
                     /locus_tag="VD968_06225"
     CDS             complement(1360..2106)
                     /locus_tag="VD968_06225"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HYE14020.1"
                     /translation="MRIIEGLSALYDAALALAYPHACGACGVSSVEARSDMPACAGCW
                     AAAKLFTGGETLCWKCGAPAQGAAPEAAREGVRCRRCEAEEFTAARSCGIYEGALRAA
                     VLYLKREPFPSARLVRMLAAAQSRPPLDRATVVMPVPLHPERERERGFNQAAVLARAL
                     ARARGLRLDEWSLARVSHTERHRAGMDARARRETVEGAFKVVRPRLVRDESPLIVDDV
                     LTTGATISACAAALKGAGACEVFVLTLARA"
     gene            complement(2233..2601)
                     /locus_tag="VD968_06230"
     CDS             complement(2233..2601)
                     /locus_tag="VD968_06230"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HYE14021.1"
                     /translation="MDKRKVKAYRDRLLARRESLFSQVTEAELSSRERDLEATQDPAD
                     MAANAYTKELLISMSANDRKLLQLIDEALNRVEKGEYGDCVNCGEPVQEKRLDAVPWA
                     RYCLKCQDLQERGLLNTDED"
     gene            complement(2693..3157)
                     /locus_tag="VD968_06235"
     CDS             complement(2693..3157)
                     /locus_tag="VD968_06235"
                     /inference="COORDINATES: protein motif:HMM:NF014629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HYE14022.1"
                     /translation="MRLRLIWVGKTRDAHLRALVAEYLKRLGRFARFEVAELRESGAA
                     DERVCLDEEGKRILGSLASDTFTVLLDVEGERLWGSRELAAQIEAWQARPLKEVTFVV
                     GGHLGVSEEVRRRADLRWSLTPLTLTHEMARLLLVEQLYRAHTIMRGLPYQK"
     gene            complement(3273..>3950)
                     /locus_tag="VD968_06240"
     CDS             complement(3273..>3950)
                     /locus_tag="VD968_06240"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HYE14023.1"
                     /translation="TQAKPGRLEAAHKGTLVLDEVAHLSVDAQAKLLRVIERREFERL
                     GGRRTVKVDARLLALTNVDLDDAVRRRAFREDLFYRLNVVRIHVPPLRERREDVAPLA
                     SHFLEAYAAKHGRPARGFRAEALAALAAYSWPGNVRELANVVERAVIVSDAETLGAGD
                     LPESVRAAAGPRLARRPTLAELEAEYVREVLAAARGNKSEAARVLGISRKNLYEKLAR
                     YGKEARD"
BASE COUNT          619 a         1365 c         1287 g          679 t
ORIGIN      
        1 cgcgagagcg agcggctctt gtaggggatg tgtatgtact cgacgaggcg tatgaccgac
       61 ggcgcgtgca tcgttatcct cgccgagtgg agcatgtggc cgttgtgctc ctccatgcgg
      121 gcgatgccct tgaaaatcat aacgacggcg cgccgctcgg tgcagacgtt caccggctcg
      181 taagaggcgt tcaggactaa aacgcgtccg gtcatattgc ctgaaagata ttacgcgagc
      241 gttaaagcaa gtgacaagcg gcaagtcgcg ggcgactgtg gcccggagga gactttacgc
      301 gcccatctta acccgccgcc ccgcgcttgt cactcctcac aaggttttaa atttgtcggt
      361 ggcgtcaacg agcgccgaga ttgtgccggg ctctgtggcg gagtggcccg agtcggggat
      421 gacgcgcagg tcggcctcgg gccacgcgcg gtgcagctcc cacgcgctct gcatagggca
      481 gaccacgtcg tagcggccct gcacaatgat ggccgggatg tggcggatct tcccgacgtt
      541 ctcgatgagg tagttgtcag tcgagaagaa ggcgttgttc atgaagtagt ggcactctat
      601 gcgggcgaag gcgagcgcga actcgggctc ggcgaagcgg tctatcatcg cgtagtcgaa
      661 gagcagcttc gacgtgctgc cctcccagac gctccacgcc cgcgcggctt cgaggcgcac
      721 cgcctcgtcc tcgctcgtca gcctccggta gtaggccgag acgaagtcgc cgcgctcccc
      781 ctccggtatc accttctcgt actcctccca aacgtctggg aaaatccagc tcgcgccctc
      841 ttggtagaac cagcgaatct ccttcggccg gcagaggaat atgccgcgca gcgtcagcga
      901 gcgcacgcgg ccggggtgcg tctcggcgta tgcgagcgag agcgtgctgc cccaggagcc
      961 cccgaagacg tgccagctct ctatccccaa cttctcgcgc agcttctcca ggtcttcgac
     1021 gaggtgccag gtggtgttct cttcgaggct cgcgtgcggc gtgctctgcc ccgagccgcg
     1081 ctggtcgaag aggacgacgc ggtaggccgc cgggtcgaag aagcggcggt agtcgttgat
     1141 gaggccgccg cccggccccc cgtgcaggaa gacggcgggc cgcccgtctg ggttcccgac
     1201 ctgctcgtag tagagcgtgt gtacgggcga gacctgtagc ctgcccgtgt cgaacggctc
     1261 aatcggcgga taaagctcct tcatgcgcga catgatacta gaggctggag gctggagact
     1321 agaggctagt taagaagcgc ctttcagccg gcttcccctt cacgcgcggg cgagcgtgag
     1381 gacgaagact tcacaggcgc ccgcgccctt gagcgccgcg gcgcaggccg agattgtggc
     1441 cccggtcgtg agtacgtcgt caactatcag ggggctctcg tcgcgcacga ggcgtggccg
     1501 caccactttg aaggcgccct cgaccgtctc gcgtcgcgct cgggcgtcca ttccggcgcg
     1561 gtggcgctcg gtgtgagaga cgcgggcgag gctccattcg tcgagcctca gtcccctcgc
     1621 ccgcgcgaga gcgcgcgcga gcacggcggc ctggttgaag ccgcgctccc gctcgcgctc
     1681 cgggtgtaga ggcacgggca tgacgacggt ggcgcggtcg agcggcggcc ggctttgcgc
     1741 cgcggcgagc atgcgcacga ggcgcgcgga cgggaacggc tcgcgcttca ggtagagcac
     1801 ggccgcgcgc agcgccccct cgtagatgcc gcacgaacgc gccgccgtaa actcctcggc
     1861 ctcgcacctg cggcagcgga cgccctcacg cgcagcctcc ggcgccgccc cctgcgcggg
     1921 cgccccgcac ttccagcaca gcgtctcgcc gcccgtgaaa agcttcgccg cagcccagca
     1981 cccggcgcac gccggcatat ctgagcgcgc ctcgacgctc gacacgccgc acgcgccgca
     2041 cgcgtgcggg taggcgagcg cgagcgccgc gtcgtagagc gcgcttaagc cctcgatgat
     2101 tctcataagg aggcttcggc ctgctgggtg gggtcgggcc gggcggcgta aggttagcac
     2161 aaacgaaagc ctcacggctc gtgcttatcc gagccgtgag gccgtgagat tttccagttc
     2221 cgcggggcgc ctttagtctt cgtcggtgtt gagcaggccg cgctcctgca agtcctggca
     2281 cttgaggcag tagcgcgccc acggcacggc gtccagccgc ttctcctgca ccggctcgcc
     2341 gcagttgacg cagtcgccgt actcgccctt ctcgacgcgg ttgagcgcct cgtctatgag
     2401 ctgaagcagc tttcggtcgt tggccgacat cgagattaaa agctctttgg tataggcgtt
     2461 ggcggccatg tctgccgggt cttgcgtggc ctcgaggtcg cgctcgcggc tagacaactc
     2521 ggcctccgtc acctggctga agagcgactc gcgccgcgcg agcagccggt cgcggtacgc
     2581 cttgactttc ctcttatcca tccttttata cgctccttat ttaacccctc ttgatcgtaa
     2641 accctgttca atacgtcgcc ccgcggcaga acgtttcaag gccgggccgc cctcacttct
     2701 gataggggag cccgcgcatt atcgtgtgcg cccggtagag ctgctcgacc agaagcagcc
     2761 gcgccatctc gtgcgtaagc gtcagcggcg tgagcgacca gcgcaagtcg gcacggcgcc
     2821 tgacctcttc tgagacgccc aggtggccgc ccactacgaa ggtcacctcc ttgagcgggc
     2881 gggcctgcca cgcctctatc tgcgccgcaa gctcccgcga cccccagagc ctctcgccct
     2941 caacgtccag caggacggtg aaagtatcag atgccagaga gcccaggatg cgtttgccct
     3001 cttcgtcgag gcaaactcgc tcatcggccg ccccgctctc gcgcagctcc gccacctcga
     3061 accgggcgaa acgccccagc cttttcaggt actccgcgac gagcgcccgc aggtgggcgt
     3121 cgcgcgtctt ccctacccag atgaggcgca aacgcataga gcagaggcta gggactaggg
     3181 gccgggggct agttttgacc cttttcccgc cgtgaatttc accgccaaaa gcgtgcccac
     3241 gccgcgatta cgtttttact ggcccccggc ccctaatccc tggcctcttt cccgtagcgc
     3301 gcgagcttct cgtacaggtt cttacggctg atgccgagga cgcgcgcggc ctcggacttg
     3361 ttgccgcgcg cggccgcgag gacttcgcgg acgtactcgg cctccagctc cgcgagcgtg
     3421 ggccgccgcg cgagccgagg gccggccgcg gccctgaccg actccggcag gtcgcccgcc
     3481 cccagcgtct cggcgtccga gacgatgacg gcccgctcga cgacgttcgc tagctcgcgc
     3541 acgttgccgg gccaggagta cgcggcgagc gccgcgagcg cctcggcccg gaagccgcgc
     3601 gccggccgcc cgtgcttggc cgcgtaggct tcgaggaagt gcgaggccag cggcgccaca
     3661 tcctcgcgcc gctcgcgcag cggcgggacg tgtatgcgga cgacgttcag ccggtagaag
     3721 aggtcttcgc ggaaggcccg cctccgcacg gcgtcgtcga ggtcaacgtt agtcagcgcc
     3781 aggagccgcg cgtcaacctt aacagtcctg cgcccgccca ggcgctcgaa ctcgcgccgc
     3841 tctatcacgc gcagcagctt cgcctgcgcg tccaccgaca ggtgcgccac ctcgtctaaa
     3901 acgagcgtcc ccttgtgcgc cgcctccaac cggcccggct ttgcctgcgt
//
LOCUS       DASPKR010000228         5478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1194324, whole genome shotgun sequence.
ACCESSION   DASPKR010000228 DASPKR010000000
VERSION     DASPKR010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5478)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5478
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1194324"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(234..5363)
                     /locus_tag="VD968_06245"
     CDS             complement(234..5363)
                     /locus_tag="VD968_06245"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HYE14024.1"
                     /translation="MTNVGTANGADPTNPNSACGGISPGEGGNAGCSAGVHAASVTGL
                     SLANIDMNGGGQEGINLNSVTNFTLSNSNVLNMGDQVREDGLRALNLLGTNSITNTTF
                     SGNEEAQLRVENTTGGTPVSPSTLAISGSTFSTSSAPNGNHGVRFEAWNSAAAKLSVS
                     SSSFSSLFSNGIHTSAKDTADFQVTVTGSTFTNWGSSAIVVVQEESANVKFNIASNPS
                     FTRSAASTGTSHVITIDQQTTSANGSLLQGAITGNTIGTDNVVNSASVGGSGIDVDSL
                     GQGTVTVLIQNNVIDGVANRGMTLNMAEDNSGNNRLNVTVTGNNVEADNPSGFEGIFV
                     QGGTLTGNDGIICADISNNVAVSAAADGLRVRQRMETTIQLPGYTGANNNNAAVVAYL
                     QARNPSLGDTVSATNSVGVAPPNGPGGGFVNTPGPGNPCAQPTLPSAQLRGGPEAATF
                     DGATADGTAETAEAPAGGVTSRPFVSFPQNQQKPAQLGVAPERPAQKQAGAATSTGKA
                     PKGDLPSTRERVMRGKAVVSAAGETINIKIGTLRSGESLEITFQVTVANPFTATPKEV
                     SDQGTVTADGGISVLTDDPGDLTSSADETVTPIDHTTVTVSSSDTSTAFGEPVTFTAV
                     IVGVPARSQTPTGTVQFKADGNDLGSPVSFSSSGANTGTATLNTSALAPGTYVITAVY
                     SSGDSNFNSATGTLSPDQVVSKADTTVTITSDAPDPSDMNTSVSVNFTVVPVSPGAGT
                     PTGDVVITVNDTSGDTCTGSVASGTCSLTLTTAGSKTLTATYAGDDNFNGDADTESHE
                     VSNPARIAINDVKVAEPDSGSTDAVFTVTLSQPSDQTVTVQYGTSDGPAVAGTDYADG
                     GGTVTFSPGVVLQTITVPVLADGDAGEPDEYFLVNLTNASNAVIDDTQGVGTITEDSA
                     CAEPPAGMVSWWRWEDDAADYQANNPATLSGAPAFVTGKVGKALQLDGTDDHASVAAS
                     PSLNVGADGGFTLDMWVKPSAGSIDSTERQLAEWNKNTGDPDTVGAHLGINVDSGEAA
                     TPGALFADIVDTTGASHRIATGGAVLSAGGYQHVALTYDKATGTAVIYVNGVAVATES
                     LGTFTPQTSYDLYFGVRQAGAGAGTRFGGEMDEVELFGRALSAEEVKSIYDAGSAGKC
                     HECVGPVSGVVSWWAAEGNAADIQGTNEGSLVGDASFAPGKVGQAFSFDGNGDAVTVP
                     HSGSLDLSSAITIEAWVKVDSFTKDWQAIVTKGDSAWRLHRFGDSNNVAFGTSGLTTG
                     NGGPDLAGATDVADGQWHHVVGTYDGTTKALYVDGALDASTTASGLISTNTYPVMIGE
                     NAELHGRHFDGLIDEVVLYDRALSAEEVEAAFNAGGSGKCRTDLSINKTTKIDPVYLR
                     RIFSYNLSVKNLGNASATGVSVSDTLPAGVAFVDAEPSQGTCVAGGGGTVDCDLGSLS
                     GGGAEATVRIRVRAQATGTLTNTATVSGNEADSNPSNNSVTTDTQSVAVADVAVAKVD
                     SNQTVALGGNITYTVRLLNRGPSPATGIDIIDTIPTGTTFVSASTNKGVFSSLPPVGG
                     TGTLTANISNLAPDGTAEITIVVKPGAAGEYHNHATVTANETDPDSSNNSAHEATVVV
                     TLRRIMLTPQTVAGGCSTSGQVFLTGPAPPGGITVSLSSTVPSATPPPTVNIPEGANA
                     SAPFGIPTSAVTQGQTGSIKATLSSTTVGRGLTVTKGTCSP"
BASE COUNT          722 a         1813 c         1941 g         1002 t
ORIGIN      
        1 ttcggccgta acacaaggtc agaccgggag cataaaagcc acgctcagct cgacgacggt
       61 cgggcgcggg ctcacagtga cgaagggaac ctgctcgccg taaagccggg ccggggcggc
      121 gacgtcccgg cgcgacgacc aacgggaaag cgtagagggg cggccagtgg tggccgcccc
      181 tctacgcttt cccgttggcc gtcgcgccgg gacgtcgccg ccccggcccg gctttacggt
      241 gagcaggttc ccttcgtcac tgtgagcccg cgcccgaccg tcgtcgagct gagcgtggct
      301 tttatgctcc cggtctgacc ttgtgttacg gccgaagtcg ggatgccgaa gggcgcgctc
      361 gcgttggcgc cctccggtat gttgaccgtc ggcggcgggg tcgccgaagg caccgtggac
      421 gagagcgaga ctgtgatgcc gcccgggggc gcgggccccg tgaggaagac ctgcccggag
      481 gtcgagcagc cgccggcgac agtctgaggc gtcagcatga tcctgcgcag cgtgacgacg
      541 acggtcgcct cgtgcgcgga gttgttcgac gagtcggggt cggtctcgtt agccgtgacg
      601 gtcgcgtggt tgtggtactc gcctgcggcg cccggcttta cgacgatggt gatttcggcc
      661 gtgccgtcgg gcgcgaggtt gcttatgttc gccgtcagag tccccgtgcc gccgaccggc
      721 ggcagagagc tgaagacgcc cttgttggtc gaggcggaga cgaaggtcgt ccccgtgggg
      781 atggtgtcga taatgtcaat gcccgtggcc ggcgaggggc cgcggttgag caggcgtacg
      841 gtgtaggtga tgttgccgcc cagcgcgacc gtctggttgg agtccacctt cgccacggcc
      901 acgtcggcga ccgccacgga ctgcgtgtcg gtcgtgacgc tgttgttcga cgggttcgag
      961 tccgcctcgt tgcccgagac ggtcgcggtg ttggtcagcg tgccggtcgc ctgcgcgcgc
     1021 acccttatcc tgacggtggc ctcggcgccg ccgccggaga gcgagccgag gtcgcagtca
     1081 acggtgccgc cgccccctgc gacgcaagtc ccttgcgagg gctcggcgtc aacgaaggcc
     1141 acgcccgccg gcagcgtgtc ggagaccgag acgccggtgg ccgaggcgtt gcccaggttc
     1201 ttcaccgaaa ggttgtagga gaagatgcgc ctcagataga ccgggtctat cttcgtcgtc
     1261 ttgttgatgg agaggtctgt gcggcacttg ccggagccgc ccgcgttgaa ggcggcctcc
     1321 acctcctccg cggacagcgc acggtcgtag agcacgacct cgtcaatgag cccgtcgaag
     1381 tgcctgccgt gcagctcggc gttctcgcct atcatgacgg ggtaggtgtt ggtcgagatg
     1441 aggccggagg ccgtcgtcga ggcgtcgagc gcgccgtcca cgtagagcgc cttggtcgtg
     1501 ccgtcgtaag tgcccacgac gtggtgccac tgcccgtcgg ccacgtcggt cgcgcccgcg
     1561 aggtcgggcc cgccgttgcc ggtcgtcagc cccgacgtgc cgaaggcgac gttgttgctg
     1621 tcgccgaagc ggtggagccg ccaggccgag tcgcccttcg tgacgatggc ctgccagtcc
     1681 ttggtgaaag agtcaacctt cacccacgcc tcgattgtta tggccgagga gaggtcgagg
     1741 ctgccggagt gcgggacggt gacggcgtcg ccgttgccgt cgaagctgaa agcctggccg
     1801 accttgccgg gcgcgaacga ggcgtcgccc acgagcgacc cctcgttcgt cccctgtatg
     1861 tcggccgcgt tgccctcggc cgcccaccag ctaacgacgc cggagaccgg ccccacgcac
     1921 tcgtggcact tgccggccga gcccgcgtcg tagatggact tgacctcttc ggcggagagg
     1981 gcgcggccga agagctcgac ctcgtccatc tcgccgccga agcgcgtgcc cgcgccagcg
     2041 ccggcctgcc ttacgccgaa gtagaggtcg tagctcgtct gcggcgtgaa cgtgccgagg
     2101 ctctcggtcg cgaccgccac accgttgacg tagatgacgg ccgtgccggt cgccttgtcg
     2161 taggtgagcg cgacgtgctg gtagccgccc gcgctcaaga ccgcgccgcc cgtcgcgatg
     2221 cggtggctcg cccccgtagt gtccacgatg tctgcgaaga gggcgccggg agtggcggcc
     2281 tcgccgctgt caacgttgat gccgaggtgc gcgccgacgg tgtcggggtc gcccgtgttc
     2341 ttgttccact cggcgagctg gcgctcggtc gagtctatgg agccggccga gggcttcacc
     2401 cacatgtcga gtgtgaagcc gccgtcggcg cccacgttga ggctcggcga cgcggcgacg
     2461 ctggcgtggt cgtccgtgcc gtcgagctgt agggccttgc cgaccttgcc cgtcacgaag
     2521 gccggggcgc cggagagcgt ggccgggttg ttggcctggt agtcggcggc gtcgtcctcc
     2581 cagcgccacc agctcaccat gccggcgggc ggctcggcgc aggcgctgtc ctccgtgatc
     2641 gtgccgacgc cctgcgtgtc gtctatgacg gcgttggagg cgttcgtgag gttgacgagg
     2701 aagtactcgt ccggctcgcc cgcgtcgccg tcggcgagga cggggacggt tatggtttgc
     2761 agcacgacgc ccgggctgaa ggtgaccgtg ccgccgccgt cggcgtagtc ggtgccggct
     2821 actgccggcc cgtcgctcgt cccgtactgg acggtgacgg tctgatcgga cggctgcgag
     2881 agcgtgacgg tgaagactgc gtcggtcgag ccggagtcgg gctcggcgac cttcacgtcg
     2941 ttgatggcta tgcgcgcggg gttgctgacc tcgtgcgact ccgtgtcggc gtcgccgttg
     3001 aagttgtcgt cgcccgcgta ggtggccgtc agggtcttgg agcccgcggt cgtcagcgtc
     3061 agcgagcacg tgcccgaggc gaccgagccc gtgcaggtgt cgccgctcgt gtcgttgacc
     3121 gtgatgacga cgtcgcccgt cggagtgccc gcgccgggcg agaccggcac gacggtgaag
     3181 ttgacgctta ccgacgtgtt catgtcggac gggtcgggcg cgtccgaggt gatggtgacg
     3241 gtcgtgtctg ccttgctcac gacctggtcg ggcgagagcg tccccgtggc gctgttgaag
     3301 ttggagtcgc cgctgctata gacggcggta atcacgtacg tgccgggcgc gagcgccgac
     3361 gtgttgaggg tggccgtgcc cgtgttggcc ccgctcgaag agaacgagac cgggctgccg
     3421 aggtcattgc cgtcggcctt gaactgcacg gtgccggtcg gcgtctgcga gcgcgcgggc
     3481 acgccgacta tcacggccgt gaaggtgacc ggctcgccga aggccgtcga ggtgtcggac
     3541 gaggagacgg tgacggtcgt gtggtctatg ggcgtgaccg tttcgtcggc cgagcttgtg
     3601 aggtcgcccg ggtcgtcggt caggacgctt atgccgccgt cggccgtcac tgtgccctgg
     3661 tccgagacct ccttcggcgt ggcggtgaac gggttggcta ccgtcacctg gaaggttatc
     3721 tcaaggctct cgcccgagcg cagtgtgcct atctttatgt ttatcgtctc gcccgcggcg
     3781 ctgacgaccg ccttgccgcg catcacgcgc tcgcgggtcg agggcaggtc gcccttcggc
     3841 gccttgcctg tcgaggtcgc cgcgccggcc tgcttctgcg ccggccgctc gggagcgacg
     3901 cccagctgcg ccggcttctg ctgattctgc gggaaggaga cgaacgggcg cgacgtgacg
     3961 ccgcccgccg gagcctcggc cgtctcagcc gtgccatccg ccgtcgcgcc gtcgaaggta
     4021 gcggcctcgg gcccgcccct caactgcgcc gaaggcaggg tgggctgggc gcaggggttg
     4081 cccggccccg gggtgttgac gaaccccccg ccggggccgt tcggcggggc caccccgacc
     4141 gagttagtag ccgataccgt gtcgcccagg ctcgggttcc tcgcctgcaa gtaggcgacc
     4201 acggccgcgt tgttgttgtt cgcccccgtg tagcccggca actggatggt ggtctccatc
     4261 ctctggcgca ccctcagccc gtcggccgcc gcgctcaccg ccacgttgtt agatatgtcg
     4321 gcgcagatta ttccgtcgtt gcccgtcagc gtccccccct gcacgaatat cccctcgaac
     4381 ccggacgggt tgtccgcctc cacgttgttg cccgtgaccg tgacgttcag gcggttgttc
     4441 cccgagttgt cctccgccat gttcaaggtc atcccgcggt tggcgacccc gtctatcacg
     4501 ttgttctgta tcagcaccgt gacggtcccc tgccccagcg agtccacgtc tatgccgctc
     4561 ccgcccacgg aggccgagtt cactacgttg tccgtcccga tggtgttgcc cgttatcgcc
     4621 ccctgcagca gcgacccgtt cgccgacgtc gtctgctggt ctatcgttat cacgtgcgac
     4681 gtgcccgtcg aggccgccga cctcgtgaac gacgggttgc tcgctatgtt gaacttgacg
     4741 ttggccgact cctcctgcac caccactatc gcgctagagc cccagttcgt gaacgtgctc
     4801 cccgtcaccg taacctggaa gtccgccgtg tccttcgccg acgtatgtat cccgttagag
     4861 aacaggctcg agaacgagct cgacgagacc gacagcttcg ccgccgccga gttccacgcc
     4921 tcgaacctca ccccgtggtt gccgttaggc gccgaactgg tcgagaacgt gctgccggag
     4981 atggcgagag tcgagggcga gacgggcgtc ccgcccgtcg tgttctccac cctcagctgc
     5041 gcctcctcgt tgccgctgaa cgtggtgttc gtgatcgagt tcgtccccag caggttcagc
     5101 gcccgcagcc cgtcctccct cacctggtcg cccatgttaa ggacgttgct gttagagagc
     5161 gtgaagttgg tcaccgagtt gaggtttatg ccctcctggc ccccgccgtt catgtctatg
     5221 ttcgccaagg agaggccggt gaccgaggcg gcgtgcacgc ccgccgagca gccggcgttg
     5281 ccgccctcgc cgggcgagat gccgccgcag gccgagttcg ggttggtggg gtccgccccg
     5341 ttcgccgtcc cgacgttcgt catctggacg ttggagagcg agacgtcgtc ggcgtttacg
     5401 aactcggcgg cgcggttcga gatagaggag aaggtgccgc ccgaggcgtc ggtcgagccc
     5461 gagcccgtga cgcggaag
//
LOCUS       DASPKR010000229         2778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_935405, whole genome shotgun sequence.
ACCESSION   DASPKR010000229 DASPKR010000000
VERSION     DASPKR010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2778)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2778
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_935405"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..263)
                     /locus_tag="VD968_06250"
     CDS             complement(<1..263)
                     /locus_tag="VD968_06250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="STM3941 family protein"
                     /protein_id="HYE14025.1"
                     /translation="MSDVNLADETVIELSKAKLVLIMLGAGAFVAAGAWMLSLDAAAV
                     SSERSFAYFFNDATFVRGLGLVTVVFFGFCGLYAARALFDKKPG"
     gene            394..1173
                     /locus_tag="VD968_06255"
     CDS             394..1173
                     /locus_tag="VD968_06255"
                     /inference="COORDINATES: protein motif:HMM:NF024790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M50 family metallopeptidase"
                     /protein_id="HYE14026.1"
                     /translation="MKFNIARDARPQVHTLLAATALSVVLWYIPYAEILTYPFRIFVT
                     FIHEGGHALAAMLTGNSVQSLAVSLDGSGQVYSTAGGLFSRLFVSSAGYLGAMSFGAL
                     LLWLVRHRVKARAVLAGSAALILLLTALFGFFMPVWNWSLPGLFTIVAGVAIPLGLLA
                     AARYLSPRAATFLVGFLAVQCVLNAVFDLRNVLFMSALSDAHTDAVNMAQATGIHQIV
                     WALFWMVIAFVILSLALRAYAVSKDRPSQPDLPFEDSPLEV"
     gene            1185..1529
                     /locus_tag="VD968_06260"
     CDS             1185..1529
                     /locus_tag="VD968_06260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14027.1"
                     /translation="MSPEIIERSPGAPHETPAAPDGLFPSPDEPPAPTLGALPLGARL
                     ILRCRKDWRAAAVAAFEPDTGRVVLSVASPSGHTYRVRRPPGSALSLDGPIPVLGEGT
                     WRAAFARYDLRW"
     gene            1773..>2778
                     /locus_tag="VD968_06265"
     CDS             1773..>2778
                     /locus_tag="VD968_06265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14028.1"
                     /translation="MPAKNKNIFVIGDLVIDHTIYVSIESERRSHLNIGVPIYQVLRR
                     LDTAGGAANCARILSVLNAGHTFLWGLIGKSHWGSFRSILERCQLIDGAHSNIKFRGV
                     QDETGAQMNTITRLLVPESGPSFDPPSPVVRFDDYGHVHISEDKRNTVLHYLERVHLK
                     YNLDGIVLDDLDMNCLKVDMVKKVADFAAKHGIPLFVNPKHEKDKYKDIKGRAIIPSL
                     TEWCHLVGQSERLMYWRDNLDREQSLREMAELSFENLGNFDYHIIECGKHGSVLIAPH
                     PDKLDRYAVYRADPHVTQVNNPSPHFGCGDVLTAIFAMEFSEKRQGAKTEEALDAFRR
                     A"
BASE COUNT          533 a          917 c          782 g          546 t
ORIGIN      
        1 ccgggctttt tgtcgaacag cgccctggcg gcgtacagcc cgcagaaccc gaagaacacg
       61 accgtcacga gcccgaggcc ccggacgaac gtcgcgtcgt taaaaaagta cgcgaacgag
      121 cgctcggagc tgacggccgc cgcgtcgagg gagagcatcc acgccccggc cgccacgaag
      181 gcgccggccc cgagcatgat cagaacgagc ttcgccttgc tcagttcgat taccgtctcg
      241 tcggctaggt tcacgtcgct cacgaagctc attataccgg cggcgcgggc gaaatcggcg
      301 ttttcgcgcc atttttttgc aacccggaac gactcgggtt agaatctcgt atcagttcgc
      361 gagggaacgg caacacaaac gagcggagac cctatgaaat tcaacatcgc acgcgacgcg
      421 cgcccgcagg ttcacacgct tctggccgcg accgccctga gcgtcgtgct ctggtacatc
      481 ccctacgcgg agatactgac ctacccgttc cgcatattcg tcaccttcat acacgagggc
      541 ggccacgcgc tcgccgcgat gctcacgggc aactccgtgc agagcctcgc ggtctcgctg
      601 gacgggagcg ggcaggtcta ttcgacggcg ggcggcctct tctcgcgcct gttcgtctcc
      661 agcgccggct acctcggcgc gatgtcgttc ggcgcgctgc tgctctggct cgtgcgccac
      721 agggtcaagg cccgcgcggt gctcgccggc tccgccgcgc tgatactgct gctgacggcg
      781 ctcttcggct tcttcatgcc cgtatggaac tggagcctgc cggggctgtt cacgatagtc
      841 gcgggtgtgg cgataccttt ggggcttctg gccgcggccc gctacctgag cccgcgcgcg
      901 gccacgttcc tcgtcggctt cctcgccgtg cagtgcgtcc ttaacgccgt cttcgacctt
      961 cgcaacgtgc tcttcatgtc ggccctctcc gacgcgcaca ccgacgccgt caacatggcg
     1021 caggccacag gcattcacca gatcgtctgg gccctcttct ggatggtgat agccttcgtc
     1081 atactgtcgc tcgcgctgcg ggcctacgcc gtctcgaagg acaggccgtc gcagcccgat
     1141 ctgccgttcg aggactcgcc gctcgaagtt taagggactt aactttgagc cccgaaataa
     1201 ttgagaggtc gccgggagcg ccgcacgaaa cgcctgccgc ccccgacggc ctcttccctt
     1261 ctccggacga accgcccgcc cctacgctcg gggcgctccc cctgggcgcg cggctcatac
     1321 tgcgctgccg caaggactgg cgcgcggcgg cggtcgcggc cttcgagccc gacacgggcc
     1381 gcgtagtcct ctccgtcgcc tccccctccg gccacacata ccgcgtgcgc cgcccgcccg
     1441 gctcagccct ctcgctcgac ggccccatcc ccgtcctcgg cgaaggcacc tggcgcgccg
     1501 ccttcgcccg ctacgacctg cgctggtaac agattgttta ccttaacctg tcgctggaaa
     1561 actcctctaa ggcagccgct caaaactatt gcgatttagt tcagtctatg attatgatgt
     1621 cggctcgatg ccagtaacgc ttcacccgtc cctgctagtc acagcaacga aatagcatga
     1681 tgcatgagca tgacatgccc cggccttatc tgaaaggctc atcgaacgtc aaagttagta
     1741 atcggtaaaa cacgcgcgcc tgagggtttt ctatgcccgc caagaataag aatatcttcg
     1801 tcataggtga cctcgttata gatcacacca tttacgtcag catcgagtcg gaaaggcgtt
     1861 cccatctaaa cattggcgtg ccgatttacc aagtcttacg ccggctcgac acggcgggcg
     1921 gcgcggctaa ctgcgctcgc attctttcgg ttttgaacgc gggacacacc tttctgtggg
     1981 ggttgatcgg gaagtctcac tggggcagct tccgctccat acttgagcgc tgccagctca
     2041 ttgacggagc ccactccaac ataaagtttc gtggcgttca agacgagacg ggggcgcaga
     2101 tgaacacgat cacacgactc ttggtgccgg agtccggccc ttcgttcgac cccccttcgc
     2161 ccgtagtccg gtttgatgac tacggccacg tccacatttc agaggacaag aggaacaccg
     2221 tccttcatta cctggagcgt gtgcatctga aatacaacct cgacggcatc gtcctcgacg
     2281 accttgacat gaactgttta aaggtggaca tggtcaaaaa ggtcgctgac ttcgcggcca
     2341 aacacggcat cccgctattc gtcaacccca agcacgaaaa ggacaaatac aaggacataa
     2401 aaggcagggc catcatcccg agcctcactg aatggtgcca ccttgtcgga caatccgaac
     2461 ggctcatgta ctggcgggat aaccttgatc gcgagcagag cctgcgggag atggctgaat
     2521 tgtcattcga gaatctcggg aacttcgact accacatcat tgaatgcggt aagcacggct
     2581 cggttctgat cgcccctcac ccagataaac tcgataggta cgccgtctat cgggctgatc
     2641 cacatgtgac tcaggtgaac aacccgtcgc cacacttcgg ctgcggcgat gtcctgacgg
     2701 ccatcttcgc gatggagttt tcggagaaga ggcagggggc gaaaacagag gaggccctcg
     2761 acgcgtttcg gagggcca
//
LOCUS       DASPKR010000230         3821 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_674747, whole genome shotgun sequence.
ACCESSION   DASPKR010000230 DASPKR010000000
VERSION     DASPKR010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3821)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3821
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_674747"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..594)
                     /locus_tag="VD968_06270"
     CDS             complement(<1..594)
                     /locus_tag="VD968_06270"
                     /inference="COORDINATES: protein motif:HMM:NF013215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14029.1"
                     /translation="MASAEVAVLQNIAASPPVGTVTRGRRALWWPRRGSKSRGFWYET
                     AEGRRVTDEAALARIKSLAVPPAWREVRVSPSPRSALQAIGLDREGRVQRIYSPAFVA
                     ARSRRKYEKIERFGELLAALRSRTNEDIAREGLGKEKVLAVVVRLINDLYFRVGSEHS
                     VRRYRTYGVTTLRNHHLEIKQGGRLVFSFTGKHHIKHR"
     gene            complement(800..1534)
                     /locus_tag="VD968_06275"
     CDS             complement(800..1534)
                     /locus_tag="VD968_06275"
                     /inference="COORDINATES: protein motif:HMM:NF014630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-type zinc ribbon domain-containing protein"
                     /protein_id="HYE14030.1"
                     /translation="MKAELEQLIALQNADTTIRKLRAELEAIPKRRAEIENEFDQRAF
                     EFKALEDRRDAARSARAQLDKDMAEQRARAEKAERDLMSSTNSKAYEAAIREADAAKK
                     HISEIETKILEQMEAAEQAEKSLAEREPEFSRLRGERDERLREFEAQTRAQSEEIEAL
                     IAERQRMLDSLPPAARSLYNRISTRIRDGVAVAEARNNSCSSCFISLRPQVMAEIRRG
                     EEIVICDNCNRILYYVPPAQAAHKVF"
     gene            complement(1644..2654)
                     /locus_tag="VD968_06280"
     CDS             complement(1644..2654)
                     /locus_tag="VD968_06280"
                     /inference="COORDINATES: protein motif:HMM:TIGR02824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
                     /protein_id="HYE14031.1"
                     /translation="MGVEKMRALRFVSHEGAGRVEIAEVERPRAAADRVRVRVVAAGL
                     NRADLLQKRGRYPAPPGAPADIPGLEFAGVVEQLGDEARAWKTGQRVFGITAGGAQAE
                     FAVVPESHVAEIPEGMSFVEAAAVPEVFITAHDALFTQARLAPGERVLVHAVGSGVGT
                     AAVQLARAAGAVAVFGTARTAEKIERAREFGLDEGVAVRDDPGAFAEAVRGWTKGAGV
                     NVVLDLVGASYMAASLDALAPRGRMVLVGTMGGADGALDYRKMMGKRLTLMGTVLRAR
                     SVEEKAAAVRLFAAQVVPLFARGVLRPVLDSSYPLAEAEAAYARLESNATFGKVVIEV
                     GS"
     gene            2730..3758
                     /locus_tag="VD968_06285"
     CDS             2730..3758
                     /locus_tag="VD968_06285"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HYE14032.1"
                     /translation="MKGSGGLFVIVNNAAARAREAWPRVREALTRAGVEFYAHESLRP
                     GDTERSTRAALAEGYTTVAVVGGDGTLSAAAAGYFRPCEELKEGEEPRPVHASAALAV
                     LPAGTGDDFARGLTGGRREPLEAWLARLVEHCRSDEDKGAAVPRVAARGVDVLAGSAA
                     RPTEAGGAAPRRFICLNAATLGIGAEVAARVSSQLNWVRRFSGEARFAWAAVRSLVAW
                     RARRVRVEVDGRAWAECSTNLLAVVNGPYAGGGMNFSPEADIADGLLDVLTVCGISRA
                     GLVRELARVHTGGHLANPKVRLTRGTRARVETLDGEAPLGVEADGDVRGFTPVELRVL
                     PAALRVVF"
BASE COUNT          530 a         1338 c         1340 g          613 t
ORIGIN      
        1 ccggtgcttt atgtggtgct tgcccgtgaa ggagaagacg aggcggccgc cctgcttaat
       61 ctccaggtga tggttgcgca gcgtcgtgac gccgtatgtg cggtagcggc ggacgctgtg
      121 ctcggagccg acgcggaagt ataggtcgtt gatgaggcgg acgactactg cgagcacctt
      181 ttccttgccc agcccctcgc gcgcgatgtc ctcgttcgtc ctgctacgga gcgcggcgag
      241 cagctcgccg aagcgctcga tcttttcgta cttgcggcgc gaccgggcgg cgacgaaagc
      301 ggggctgtag atgcgctgca cgcgcccctc tcggtcgagg ccgatggcct gtagggcgct
      361 gcggggcgag ggcgagacgc gaacctcgcg ccacgcgggc gggactgcga gcgactttat
      421 gcgcgcgagc gccgcctcgt cggtgacgcg ccggccctcg gccgtctcgt accagaagcc
      481 gcgagacttc gagccgcgcc tcggccacca gagagcgcgc cgcccgcgtg taacagttcc
      541 gaccggcggc gacgccgcga tgttctgtag gactgcaact tccgcgctcg ccaaagtgaa
      601 gcctccccct tgctctcccg gcccgccacg gccaaaaacc ttcgcgcctg agcgaaaaca
      661 cgcgcccccc gtctctcgcg gcgcggcgta gggcatccac gctggcaaac cgagtgccgc
      721 cgccgtcgga cgcgtgcaaa agagcgggcg cgcccttcaa tcaaggggtc gcgcccgccg
      781 tttctctcct gccctggctt tagaagacct tgtgcgcggc ctgcgcgggc gggacgtagt
      841 agaggatgcg gttgcagttg tcgcagatga ctatctcctc gccgcgccgt atctcggcca
      901 tcacctgcgg gcgaagggat atgaagcagg aggagcagga gttgttgcgc gcctcagcga
      961 cggcgacgcc gtcccgtatg cgggtgctga tgcggttgta gagcgacctg gcggcgggcg
     1021 ggagcgagtc gagcatgcgc tggcgctcgg cgatgagcgc ctcgatctct tcggactgcg
     1081 cgcgcgtctg cgcctcgaac tcgcgcagcc gctcgtcgcg ctcgccccgc aggcgcgaga
     1141 actccggctc gcgctccgcc agactcttct cggcctgctc ggccgcctcc atctgctcga
     1201 ggattttggt ctctatctcg gagatgtgct tcttggcggc gtcggcctcg cgtatggcgg
     1261 cctcgtaggc tttggagttg gtcgaggaca taaggtcgcg ctcggccttc tcggcgcggg
     1321 cgcgctgctc cgccatgtcc ttgtcgagct gggcgcgggc cgaccgggcg gcgtcgcgcc
     1381 ggtcttcgag ggccttaaat tcgaaggcgc gctgatcgaa ctcgttctcg atctcggcgc
     1441 gccttttcgg gatggcttcc agttctgccc gtagctttct tatggtcgtg tccgcgttct
     1501 gcaaagcgat caactgctct aattccgctt tcactatgtc gttctcctca aaacatcagg
     1561 gcggtcggcg ccggaggggc gccttcatct atgagccctc attttcgcag aagccgcgac
     1621 gggtgacaag cggccgggaa gtttcaactc cccacctcga tgacgacctt gccgaacgtg
     1681 gcgttcgatt cgagccgggc gtatgcggcc tcggcctcgg cgagcggata ggaggagtcg
     1741 aggacggggc gcagcacacc gcgggcgaag agcggcacga cctgcgcggc gaagagccgc
     1801 acggccgcgg ctttctcctc tacggagcgt gcgcgcagca ccgtccccat gagcgtgagc
     1861 cgcttgccca tcatcttccg gtagtcgagc gcgccgtctg cccctcccat cgtgccgacg
     1921 agaaccatgc ggccgcgcgg cgccagggcg tccaaactcg cggccatgta agacgcgcct
     1981 acgaggtcta agacgacgtt cacgcccgcg cccttcgtcc accctcggac ggcctcggcg
     2041 aaggcgcctg ggtcatcgcg aacggcgacg ccttcgtcca ggccgaactc gcgcgcacgc
     2101 tctatcttct cggccgtgcg cgccgtcccg aagacggcga cggcgcctgc cgctcgcgcg
     2161 agctgtacgg cagcggtgcc gacgcccgac ccgacggcgt gcacgagcac gcgctcgccg
     2221 ggcgcgagcc gcgcctgcgt gaacagcgcg tcatgcgccg tgatgaagac ctcggggacg
     2281 gccgcggcct cgacgaaact catgccttca ggaatctcgg cgacgtggct ttcggggacg
     2341 acggcgaatt cggcctgcgc tccgcccgcg gtgatgccga agacgcgctg gcccgtcttc
     2401 cacgcgcgcg cctcgtcgcc tagctgctcg accacgcccg cgaactcgag gcccggaatg
     2461 tccgcgggcg cgccgggcgg cgcggggtat cggccgcgct tttgcaaaag gtctgcgcgg
     2521 ttgaggccgg cggccacgac gcgcaccctc accctgtcgg ccgcggcccg cggcctctcg
     2581 acctctgcta tctccacacg ccccgccccc tcgtgcgaga cgaacctcaa ggccctcatc
     2641 ttctcgacgc ccactcgtgc taccctcctg cgcgcatatt aacaccgcgg ccgccgcccg
     2701 ccgccgcccg tggtaaagtc gtgcgcgcaa tgaaagggtc gggcggcctc ttcgtcatcg
     2761 tcaacaacgc ggcggcgcgg gcgcgcgagg cgtggccgcg cgtgcgtgaa gcgctcacgc
     2821 gcgccggcgt agagttctac gcgcacgagt cgctgcggcc gggcgacacg gagcggagca
     2881 cgcgcgcggc gctcgccgaa ggctacacga cggtcgcggt cgtgggcggc gacggcacgc
     2941 tctcggcggc cgcggccggc tacttccggc cctgcgagga actcaaagaa ggcgaggagc
     3001 cgcgccccgt ccacgcctcg gccgcgctcg ccgtgctgcc cgcggggacg ggcgacgact
     3061 tcgcgcgcgg gctgacgggc ggcaggcgcg agccgctcga agcctggctc gcacggctgg
     3121 tcgagcactg ccggagtgat gaggataaag gcgccgctgt tccgcgtgtc gcggcgcggg
     3181 gcgtggacgt gctggccggg agcgccgcgc ggccgacgga ggcaggcggc gcagcgccgc
     3241 ggcgtttcat ctgcctgaac gcggcgacgc taggcatcgg cgcggaggtc gcggcgcgag
     3301 tctcgtcgca actgaactgg gtgcggcggt tctcgggcga ggcgcggttc gcctgggccg
     3361 cggtacggtc gctcgtggcg tggcgcgcgc ggcgcgtgag ggtagaggtt gacggccgcg
     3421 cgtgggccga gtgctcgacg aaccttctgg ccgtcgtcaa cggcccctac gcgggcggcg
     3481 gcatgaactt ctcgcccgag gccgacatcg cggacggcct gctcgacgtg ctcaccgtct
     3541 gcggcatctc gcgcgccggc cttgtgcgcg agctcgcgcg agtccacacg ggcggccacc
     3601 tcgcaaaccc aaaagtccgc ctaacgcgcg gcacgcgcgc ccgcgtcgaa acgcttgatg
     3661 gagaagcccc gctcggcgtg gaggccgacg gcgacgtgcg cggcttcacg cccgtcgagc
     3721 tgcgcgtcct gccggccgcg ttgcgcgtcg tcttctgaag gagatgcgcg cctccatcag
     3781 tcagccttta cttcagcaac gcgcgggcgc gggcgatgac g
//
LOCUS       DASPKR010000231         6831 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1840745, whole genome shotgun sequence.
ACCESSION   DASPKR010000231 DASPKR010000000
VERSION     DASPKR010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6831)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6831
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1840745"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(123..1022)
                     /locus_tag="VD968_06290"
     CDS             complement(123..1022)
                     /locus_tag="VD968_06290"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYE14033.1"
                     /translation="MSEGRRSFISGALRALAASALASKVLGQQQQPPPKPAEPLEPLA
                     LKDPNVIQGDFTFRSGGATMNGHLARPKGPGRYPLVVIFSPNPGLTDDLRNTAAQLAQ
                     GGFLGLAYDTYSRHPGITISQARERFDYFSGREFDEQNRRDTVAGIESLRRQPYFKRG
                     RVGVMGFCGGARQALIFSTESREVGAVVNFYGPPVLNPAAYQSRKGPFKLDVMDVLDK
                     IRAPVQCHYGAADPIIPLADVERLERDLKAQGTPTEVYVYEGAAHAFYDFTRRNFRPE
                     AARLARERMIRFFQTHLGAGARP"
     gene            complement(1199..2608)
                     /locus_tag="VD968_06295"
     CDS             complement(1199..2608)
                     /locus_tag="VD968_06295"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE14034.1"
                     /translation="MATLSFWGGVGTVTGSKYLIESGRSSVLVDCGLFQGLRELRERN
                     WEDPPFDVKGLDAVIITHAHIDHTGYLPRLVRLGFKGPVFCSKGTADLLKLLLPDSAR
                     LQEEEAEYRNRKGLTRHKPALPLYTEEDARAALKLIKPWHNDGWPVEVAEGMRTGFRI
                     AGHILGSSLVLVEVDGAGSDGKGRRVLFSGDLGHYDQPIIRDPDPPPACDYMLVESTY
                     GDRLHDPEDPKDALARVINEAAQRGGPLLIPAFAIGRTQELIYHIRELEDEKRIPVLP
                     VRVDSPMAAAATQIYHRTREEHDEEYTEVLDEEKRHPLRTHSMLTASTREESKRLNEE
                     RGARIIISASGMMTGGRVLHHARRILPDERATVLFVGYQAAGTTGRRILEGEREVRIM
                     KEQVPVRCRVERIGGLSAHADWKEVLRWLAPMAASPPRLSFTTHGEPEAAAAMAAHIR
                     DEFGWRVEAPHYGQRVELE"
     gene            complement(2680..3138)
                     /locus_tag="VD968_06300"
     CDS             complement(2680..3138)
                     /locus_tag="VD968_06300"
                     /inference="COORDINATES: protein motif:HMM:NF018942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030416 - methylamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MauE/DoxX family redox-associated membrane
                     protein"
                     /protein_id="HYE14035.1"
                     /translation="MKGRSLLKILVPVSRFGLAALFLFAAGAKLFTVREFAANLSNLV
                     EDAWVWPVAAAVIAVELIAAALLLWPRFARTGAALSALILAGFAAYALHYVYVLNGEP
                     LECGCFGGIIASQLGVSTALRNLALIVPAAVVFFGLPRLRNAEPPEPTVA"
     gene            complement(3220..4395)
                     /gene="sucC"
                     /locus_tag="VD968_06305"
     CDS             complement(3220..4395)
                     /gene="sucC"
                     /locus_tag="VD968_06305"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019515447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HYE14036.1"
                     /translation="MKIHEYQGKELLSKYGVAVPRGIVARTPDEAFDAAKQLGTDVVV
                     VKAQIHAGGRGKGGGVKLARSPEEAREIASGMLGMKLVTHQTGPEGREVRTLLIEEGL
                     PIDREFYLGVVLDRASGRPVFMASAAGGMDIEEVAAHTPEKILKETVNPAVGFRPFQA
                     RKLAFGLGLPAQLVNQAAKFMQSLYDAYEKMDASLLEINPFLLTKDGRLIALDAKVNF
                     DDNALYRHKEFESLRDLNEEEPLEIEASKFDLNYIKLDGNIACMVNGAGLAMATMDII
                     KLAGGEPANFLDVGGGASQQRVEAAFRILLADEHVKAVLINIFGGIVRTDMVARGVIE
                     AAKAIGVEVPVVVRLEGTNVEEGRRLIAESGMNFTVASGMKDAAEKVVALANRQAAA"
     gene            4795..5220
                     /locus_tag="VD968_06310"
     CDS             4795..5220
                     /locus_tag="VD968_06310"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HYE14037.1"
                     /translation="MGEEVVVTSGVNLRNEVSYGEGRTFVSDEPASVGGDGAGPDPYT
                     LLLAALGSCISMTLKMYARRKGWPLERVVVRLRLDRVHAKDCAECVRTEDGFAHRVER
                     SVTMEGPLDEAQRARLLEIAHRCPVHRTLTSEIVVTELS"
     gene            5327..6382
                     /locus_tag="VD968_06315"
     CDS             5327..6382
                     /locus_tag="VD968_06315"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14038.1"
                     /translation="MKRTLSLLLLLAVSLPFAACKRESPRGDSADAPEGSASPASAAD
                     GTPAGAVTPPPGAEEISAERFQREAQASPDDPTPRFNLGNIYLAERKYKEAAEAFEFV
                     VSKDPKDVDAIARLGIAYAGLDRFDEAADAFRRAVALEPNSAELRGRLADAYEKSGRA
                     ADAERERAEARRLDPNKAARPLMQAGKYAEAVAALQKIGRKDAVTYFLLGEAQTRLNR
                     HREAAEAYARCVGLNPRHADAYFQLGNAYSRIERHEDAARAFSQAVRLRPADGDAFFN
                     LGNAYASLKRYTEAASAYASAVRLNPSDADARFGLALAHLRAGNAAAAAEQYDELKKI
                     RPEKAEELRKVLAPGAR"
     gene            6500..>6831
                     /locus_tag="VD968_06320"
     CDS             6500..>6831
                     /locus_tag="VD968_06320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14039.1"
                     /translation="MRSHPQALAAALACAASLALFAAAPAPRAQKLAANSAAASYSAL
                     EQEVIRELNLARTRPADYAAHLEELRALFSGRELRRPGRVALVTEEGPAALEEAIRFL
                     RAARPLPPL"
BASE COUNT         1059 a         2319 c         2305 g         1148 t
ORIGIN      
        1 cctctttgac tctcccgacg aacatgtcag acacctttca ccgtccgaaa tggcggaagc
       61 ccgaccgtga gggagggcgt aggtctcccg ttggcgaatt gagcgagccg tgacgccctc
      121 cctcacggtc gggcccccgc cccgaggtgc gtctggaaaa atcgaatcat cctctcgcgc
      181 gcgagcctgg ccgcctcggg gcggaagttc cggcgcgtga aatcgtagaa ggcgtgcgcc
      241 gcgccctcgt agacgtagac ctcggtcggc gtcccctgcg ccttcaggtc gcgctccaga
      301 cgttcgacgt cggccagcgg gatgatcggg tcggccgcgc cgtagtggca ctggacgggg
      361 gcgcgtatct tgtcgagcac gtccatcacg tcgagcttga aggggccttt gcgcgactgg
      421 taggcggcgg ggttgagcac gggcgggccg tagaagttga cgacggcgcc gacctctctg
      481 gactcggtcg agaagatgag cgcctggcgg gcgccgccgc agaagcccat gacgccgacg
      541 cggccccgct taaagtacgg ctgacggcgc aggctctcga tgccggccac cgtgtcgcgg
      601 cggttctgtt cgtcgaactc gcgcccggag aagtagtcga agcgctcgcg cgcctggctg
      661 atggtgatgc ctgggtggcg cgagtacgtg tcgtaggcga ggccgaggaa gcctccctgc
      721 gccagttgcg cggccgtgtt gcgcaggtcg tcggtcaggc ccgggttggg cgagaagatg
      781 acgaccagcg ggtaacgccc cggccccttc ggccgcgcga ggtggccgtt catcgtcgcg
      841 ccgccgctcc tgaaggtgaa gtcgccctgg atgacgttcg ggtctttgag cgcgagcggc
      901 tccagcggct cggccggctt cggcggcggc tgctgttgct ggccgagcac cttcgaggcg
      961 agggccgagg cggctagtgc cctgagcgcg ccgctgatga aggagcggcg cccctcgctc
     1021 acctctccgc aattgtctcc caggcacacg gctcgctccc ttccccgccg gcgcgctcag
     1081 acgcgcggcg cgccggcccg ccaattcctg ctcgcccgct tggcatctgc gagctttgca
     1141 gcggtaaaat gctgactgta attcatcact ccgcgctccg ccttccgcgc acctcttcct
     1201 actccagctc gaccctctgg ccgtagtgcg gcgcctcgac gcgccagccg aactcgtcgc
     1261 gtatgtgggc ggccatcgcg gcggccgctt cgggctcgcc gtgagtggtg aaggataggc
     1321 gcggcgggga cgcagccatg ggcgcgagcc agcgcaggac ttccttccag tcggcgtgag
     1381 cggagaggcc gcctatgcgc tcgacgcggc agcgcacggg aacttgctcc ttcattatcc
     1441 tgacctcacg ctcgccttcg agtatgcggc ggcccgtggt gcctgcggcc tggtagccga
     1501 cgaagaggac tgtggcgcgc tcgtcgggca gtatgcggcg cgcgtggtgc aggactcgcc
     1561 cgcccgtcat catcccagag gcgctgatga tgattctcgc gccccgctct tcgttcaggc
     1621 gcttcgactc ctcgcgcgtc gaggccgtca gcatcgagtg cgtgcgaagg gggtggcgct
     1681 tctcctcgtc gagaacctcc gtgtactcct cgtcgtgctc ctcgcgcgtg cggtggtaaa
     1741 tctgcgtggc ggccgccgcc atcggcgagt caacgcggac gggcaggacg gggatgcgtt
     1801 tctcgtcctc gagctcgcgt atgtgataga tgagttcctg cgtgcggccg atggcgaagg
     1861 cggggatgag cagggggccg ccacgctggg cggcctcgtt gatgacgcgg gcgagcgcgt
     1921 ccttcgggtc ttctgggtca tggaggcggt cgccgtaggt tgactcgacc agcatgtagt
     1981 cgcacgcggg cggcgggtcg gggtcgcgta tgatgggctg gtcgtagtgg ccgaggtcgc
     2041 ccgagaagag cacgcggcgg cctttgccgt ccgagcccgc cccgtcaact tcgaccagca
     2101 caaggctcga gccgagtatg tggccggcga tgcggaagcc cgtgcgcatt ccttcggcca
     2161 cctcgacggg ccagccgtcg ttgtgccagg gctttatgag cttgagcgcc gcgcgcgcgt
     2221 cctcttccgt gtagaggggc agcgccggct tatgtcgcgt caggcccttg cggttgcggt
     2281 actcggcctc ctcctcctga agtctcgcgg agtccggcag cagtaacttc aaaaggtctg
     2341 ccgtcccctt agagcagaag acaggccctt tgaatccgag cctgacgagc cgcggcaggt
     2401 agcccgtgtg gtcaatgtgc gcgtgcgtga tgatgacggc gtcgaggccc ttcacgtcga
     2461 aaggcgggtc ttcccagttc cgctctcgca gttccctcag gccctgaaac agcccgcagt
     2521 ccacgagcac gctgctgcgc ccgctctcga tcaggtactt cgagccggtg acagtcccca
     2581 ccccgcccca gaaacttaag gtagccatct cgcctccgcc gcattgatct gggaaagcgc
     2641 gcagatttta caccccgcac gcatggatgg gcgagcttct caagcgaccg tcggctcggg
     2701 aggctccgcg tttcgcagtc gcggcaggcc gaagaagact accgcggcgg ggacgatgag
     2761 ggcgaggttt cgcagcgccg tggagacgcc gagctggctt gcgattatcc cgccgaagca
     2821 gccgcactct aacggctcgc cgttgaggac atagacgtag tgcagcgcgt atgctgcgaa
     2881 gcccgcaagt atgagcgccg agagcgccgc gcccgtgcgc gcgaagcggg gccagagcag
     2941 cagggccgcc gcgatcaact cgaccgcgat gacggccgcg gccaccggcc acacccatgc
     3001 gtcctcgacg aggttcgaga ggttcgcggc gaactcccgc acggtgaaga gcttcgcgcc
     3061 cgccgcgaac aggaagagcg cggcgaggcc gaagcggctc acggggacga gtatcttaag
     3121 gagtgaacgg cctttcatag cgctggcgga atcccgaccg taagggaggg cgtgttagac
     3181 gaagggcgtg acgccctccc ttacgtcgcg cttctgcaat tatgcggccg cctgccggtt
     3241 ggcgagcgcg acgaccttct cggcggcgtc cttcatgccg ctggcgaccg tgaagttcat
     3301 tcccgactcg gcgatgaggc ggcggccctc ctcgacgttc gtgccttcga gccggacgac
     3361 gaccggcacc tcgacgccga tggccttcgc cgcctcgatg acaccgcgcg ccaccatgtc
     3421 ggttcggacg atgccgccga agatgtttat gagcacggcc ttgacgtgct cgtcggcgag
     3481 cagtatgcgg aaggccgcct cgacgcgctg ctgcgaggcg ccgccgccca cgtcaaggaa
     3541 gttggcgggc tcgccccctg cgagcttgat tatgtccatc gtagccatcg ccaggccggc
     3601 gccgttgacc atgcaggcga tgttgccgtc gagcttgatg tagttgaggt cgaacttcga
     3661 cgcctctatc tctaagggct cctcctcgtt caggtcgcgc agcgactcga actccttgtg
     3721 gcggtagagc gcgttgtcat cgaagttgac cttcgcgtcg agcgctatca gccgcccgtc
     3781 cttcgtcaga aggaacgggt ttatctcaag gagcgaggcg tccatcttct cgtacgcgtc
     3841 gtagagcgac tgcatgaact tcgcagcctg gttgacgagc tgcgcgggca gccccaggcc
     3901 gaaggcgagc ttgcgcgcct ggaaggggcg gaagccgacc gcggggttga cggtctcctt
     3961 gagaatcttt tcgggcgtgt gggcggcgac ctcctctatg tccatgccgc ccgcggccga
     4021 ggccatgaag acggggcggc ccgaggctcg gtcgagcacg acgccgaggt agaactcgcg
     4081 gtcaatcggc aatccctcct cgatgaggag cgttcgcacc tcgcgcccct ccggccccgt
     4141 ctggtgcgtg acgagcttca tgccgagcat cccggaggcg atttccctcg cctcctccgg
     4201 cgaccttgcg agcttaacgc ctccgccctt gccgcgcccg cccgcgtgta tctgcgcctt
     4261 gacgacgacc acgtccgtcc ccaactgctt cgccgcatcg aacgcctcat cgggcgtgcg
     4321 cgcgacaatg ccgcgcggca cggcgacgcc gtacttgctc agaagctcct tgccctgata
     4381 ctcgtgaatc ttcatcctcg aaacccctca cgcggcggcg aaggtgacgg aagtcgccga
     4441 gccggcccgc ctctcagatt tttccgttgg agcaccgggg agtttatccg cacgcggcgc
     4501 ggcgcggcaa gcggccgcgc gcccgccctt tctggaaccg gccccccatt cgggctttac
     4561 tccgcgcata agaggtgatg cgatgactct ggcattgacg ctgctgttcg ccgttaacct
     4621 ctacgcgagg gcctgcaggg agaggtaaag gttcggtcaa actttttgct ccctgggtga
     4681 aagagagaga aagtcggcgg gttcgggtgc tccggcccgc cggctttttt tcgtcttgcc
     4741 gaagtcgccg cgccgggtta acgtgcgggc gttaatctct ggggaggtgt gaagatgggc
     4801 gaagaagtcg tcgtcacttc gggcgtcaac cttcggaacg aggtgagcta cggagagggc
     4861 cgaacgttcg tgtcggacga gcccgcgtcg gtcggcggcg acggggcggg gcctgaccct
     4921 tacacgctgc tgctggcggc gctaggcagt tgcatctcga tgaccctcaa gatgtacgcg
     4981 cgccgcaagg gctggccgct cgagcgcgtc gtcgtgcggc tccggttgga tcgcgtgcac
     5041 gcgaaggact gcgccgagtg cgtgcgtacg gaggacggct tcgcgcaccg cgtcgagcgc
     5101 tccgtcacga tggaaggccc gctcgacgaa gcgcagcggg cgcggctttt agagattgcg
     5161 caccgctgcc ccgtccaccg cactctcacg tccgaaatcg tagtgacgga gttgagctag
     5221 gccggcggct tatggcccgc ggccgcttgc cgtatcgcgc ggcggttgtt ttaatcgtgc
     5281 tcgcgcttgc ggcccccgac gttacggccc gccccgtttg aaccagatga aaagaacgct
     5341 gagcctcctt cttcttctcg ccgtctccct gcccttcgcg gcctgcaagc gtgagagccc
     5401 ccgcggcgat tcggccgacg cgccggaggg ctcggcgtcg cccgcctcgg ccgccgacgg
     5461 cacgccggcc ggagccgtga cgccgccgcc cggcgcggag gaaatctccg ccgagcggtt
     5521 ccagcgcgaa gctcaagcga gccccgacga tccgacgccg cgcttcaacc tcggcaacat
     5581 ctacctcgcc gagcgcaagt acaaggaggc cgcggaggct ttcgagttcg tcgtctcgaa
     5641 agacccgaag gacgttgacg ccatcgcccg cctcggcatc gcctacgcgg gcctcgaccg
     5701 gttcgacgaa gcggctgacg ctttccgccg cgccgtcgcc ttagagccga acagcgcgga
     5761 gctgcgaggg cgtctcgccg acgcttacga gaagtcgggg cgcgccgccg acgcggagcg
     5821 cgagcgcgcc gaggcccgac gcctcgaccc caacaaggcc gcgcgccccc tcatgcaggc
     5881 aggcaagtac gccgaggccg tcgccgcgct gcaaaagatc ggcaggaagg acgccgtcac
     5941 atacttcctc ctcggcgaag cgcagactcg cctgaaccgt caccgcgagg ccgccgaagc
     6001 ttacgccagg tgcgtcggcc tcaaccctag acacgccgac gcatacttcc aactcggcaa
     6061 cgcctacagc cgcatcgagc gccacgagga cgccgcgcgc gcgttctcgc aggccgtgcg
     6121 cctgcgacct gcggacggcg acgccttctt caacctcggc aacgcctacg cgagcctcaa
     6181 gcgctacacg gaggcggcct cggcttacgc gagcgccgtc aggcttaacc cctcggacgc
     6241 cgacgcgcgc ttcgggctcg cgctcgcgca cctccgcgcg ggcaacgccg cggccgccgc
     6301 cgagcagtac gacgagctga agaagataag gcccgagaag gcggaggagc tgcggaaggt
     6361 gctcgccccc ggcgcccgct gaaggagtgt tgacatgccg gcggctttgg cataaaagat
     6421 tcccggccac gcaacctgct cccgcctcgg cgcgggagcg cccctgacac tctttcaaac
     6481 gcgaaaagga tttaagaaga tgagaagcca cccccaggcc ctcgccgccg cgctcgcgtg
     6541 cgcggcctcg ctcgcgctct tcgccgccgc cccggcgccg cgcgcgcaga agctcgcagc
     6601 aaacagcgcc gccgcgtctt actcggcgct ggaacaggaa gtcatcaggg agttgaacct
     6661 ggcgcgcacg cgccccgccg attacgccgc gcacctcgaa gagttgcgcg cgctcttctc
     6721 gggcagggag cttcgcaggc cgggcagggt ggcgctcgtg accgaagagg ggccggccgc
     6781 gctcgaagag gcgataaggt ttctgcgggc cgcgaggcct ctgccgcctc t
//
LOCUS       DASPKR010000232         2862 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1580911, whole genome shotgun sequence.
ACCESSION   DASPKR010000232 DASPKR010000000
VERSION     DASPKR010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2862)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2862
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1580911"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..250
                     /locus_tag="VD968_06325"
     CDS             <1..250
                     /locus_tag="VD968_06325"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HYE14040.1"
                     /translation="VESALAGRWDEARALHYRLLPLMDVNFVETSPGPAKAAMAMMGL
                     LEENLRLPLVPVQEKTREAVRGVLEELGLLGGSARVSA"
     gene            237..1070
                     /locus_tag="VD968_06330"
     CDS             237..1070
                     /locus_tag="VD968_06330"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: protein motif:HMM:NF008808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HYE14041.1"
                     /translation="MSLRERMEALAEKRGGFTEEDRALFDEFKSALNRGEARAAERDD
                     ATGEWRVNSWVKRGILAGFRMGELVDMSAHASLRFFDKATYPVRALTVEDKVRVVPGG
                     SSVRDGAYLAPGVVCMPPMYVNVGAYVGEGTMIDSHALVGSCAQVGRRVHVSAAAQIG
                     GVLEPVGAVPVIVEDEVMVGGNCGVYEGTIVREGAVLAPGTILTGATPVYDLVRGEVY
                     RRTEERPLEIPARAVVVPGSRAVATGRGREWGLSLYAPVIVKYRDERTDRAVRLEDYL
                     R"
     gene            1067..2227
                     /locus_tag="VD968_06335"
     CDS             1067..2227
                     /locus_tag="VD968_06335"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYE14042.1"
                     /translation="MSEFEPARRLRGIEKSMIRQVFDRARPGSVNLGLGEPDLPTPDV
                     IRREAARVVLEEQNGYTSHAGLPSLRERVAADYAAMNLSAEQVVVTAGSQEALYLALL
                     TLVDEGDEVLLPDPGFVAYPTIVRMAGGRPVFYKLPAGAGFGFDSDSFRHALSPRTKA
                     VVCISPSNPTGRVLSREDFAAMARALEGTGVFVVSDEIYRELYYGAERPASVSEFYPE
                     RTVVVSGLSKALSMTGWRLGWLCGHAAAVRSALVLHGYVTTCASTVSQKAALAAWTED
                     AEEARASFRRTFRGRRDHLLALVESELGLRAVAPEGAFYAMVDVSRHGGCDSMRVAEA
                     MLASGVITVPGAAFGAEAEGFLRVSFCADLPVISEGVRRMKEALGRLGEGDG"
     gene            2220..>2862
                     /locus_tag="VD968_06340"
     CDS             2220..>2862
                     /locus_tag="VD968_06340"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF006416.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HYE14043.1"
                     /translation="MGEKYRVGILGATGTVGQRFVEMLEGHPQFEVTALAASDRSRGK
                     AYAEACAWRLPGSMPGRVRTLAVHPPEPPLDCDVVFSSLPGGVAREAEEAFARAGYPV
                     ISNSSALRMDEDVPLLIPEINHEHLALIDAQRRRRGYGRGFVVTNPNCSTIALALALA
                     PLHARFGVEAVIATTMQAISGAGYPGVPSLDITDNVLPFISGEEEKVETEPQKI"
BASE COUNT          410 a          942 c         1049 g          461 t
ORIGIN      
        1 ggttgagtca gcgctcgcgg gccgctggga cgaggcgcgc gctctacact accggctgct
       61 gcctctgatg gacgtaaact tcgtcgagac gagccccggc cctgcgaagg ccgcgatggc
      121 gatgatgggg ctgctggaag agaacttgcg actgccgctc gtccccgtgc aggaaaagac
      181 ccgcgaggcg gtgcggggcg tgctcgaaga gttggggctt ctcggagggt ctgcacgtgt
      241 ctctgcgtga gaggatggag gcgctggcgg agaaacgggg cggcttcacg gaggaagacc
      301 gcgcgctctt cgacgagttc aagtcggcgc tcaaccgcgg cgaggcgcgc gcggccgagc
      361 gcgacgacgc gacgggcgag tggcgtgtaa actcgtgggt caagcgcggc atactcgccg
      421 gcttccgcat gggcgagctc gttgacatga gcgcgcacgc gtcgctccgc ttcttcgaca
      481 aggcgaccta ccccgtgcgc gcgctgaccg tcgaagacaa agtgcgcgtc gtccccggcg
      541 gctcgagcgt gcgcgacggc gcatacctcg cgcctggggt ggtgtgcatg ccgccgatgt
      601 acgtcaacgt cggcgcctac gtcggcgagg ggacgatgat agacagccac gctctcgtcg
      661 gctcttgcgc gcaggttggg aggcgcgtcc acgtctctgc cgccgcgcag ataggcggcg
      721 tgcttgagcc cgtgggcgca gtccccgtca tcgtcgagga cgaggtgatg gtgggcggca
      781 actgcggcgt ctatgagggg acgattgtgc gcgagggcgc ggtgctggcg cccggcacga
      841 ttctgacggg cgcgacgccc gtctatgatc tggtgcgcgg cgaagtctat aggcggactg
      901 aggagaggcc gcttgagatt cccgcgcgcg ccgtggtcgt ccccggctcg cgcgccgtcg
      961 ccacggggcg cgggcgcgag tggggcctct cgctctacgc gcccgtcatc gtcaagtacc
     1021 gcgacgagcg cacggacagg gccgtgcggc tggaggatta ccttcgttga gcgagttcga
     1081 gccggcgcgc cgcctgcgcg gcatagagaa gagcatgatc cgtcaggtct tcgaccgcgc
     1141 gcgaccgggg agcgtcaacc tcggattagg cgagcccgac ctgccaacgc ccgacgttat
     1201 ccggcgcgag gccgcgcgcg tcgttcttga agagcagaac ggctacacgt cgcacgcggg
     1261 gctcccctcc cttcgcgagc gcgtcgcggc cgactacgcc gcgatgaatc tttcggccga
     1321 gcaggtcgtc gtcacggcgg gctcgcagga ggcgctctac ctcgcgctcc tcacgctggt
     1381 tgacgagggc gacgaggttc tgctgcccga ccccggcttc gtcgcgtacc cgaccatcgt
     1441 gaggatggcg ggcggccgcc ccgtcttcta caagctgccg gcgggcgcgg ggttcggctt
     1501 cgactccgac agcttccgcc acgctctctc gcctcgcacg aaggcggtcg tctgcataag
     1561 cccgtcgaac ccgacggggc gcgtgctctc gcgcgaagac ttcgcggcta tggcgcgggc
     1621 gctcgaaggc accggcgtct tcgtcgtgag cgacgagatt taccgagagc tttactacgg
     1681 cgcggagcgg cccgcctccg tctcggagtt ctaccctgag cgcacggtcg tcgtgagcgg
     1741 gctgtcgaag gctctgagca tgacgggctg gcgtctgggc tggctctgcg gccacgccgc
     1801 cgccgtcaga agcgcgctcg tcctgcacgg gtacgtgacg acctgcgcct cgacggtctc
     1861 gcagaaggcg gcgctcgccg cgtggactga agatgcggaa gaggcgcgcg cctccttccg
     1921 ccgcacgttc cgcgggcggc gcgaccacct gctcgcgctc gtcgaaagcg agctggggct
     1981 tcgcgcggtc gcgcccgaag gcgccttcta cgcgatggtt gacgtgagcc gccacggcgg
     2041 ctgcgattcg atgcgcgtgg ccgaggcgat gctcgcgagc ggggtgataa cagtccccgg
     2101 cgccgccttc ggcgcggagg cggaaggctt cctgcgcgtc tcgttttgcg cagacctgcc
     2161 cgtgatttcg gagggcgtgc gccgtatgaa agaggctctg ggccgtttag gagagggcga
     2221 tgggtgagaa gtaccgggta ggcattctgg gggcgacggg gacggtcggg cagcggttcg
     2281 tcgagatgct cgaaggccac ccgcagttcg aggtgacggc gctggccgct tcagaccgct
     2341 cgcgcgggaa ggcttacgcg gaggcgtgcg cgtggcgcct gccgggctca atgccggggc
     2401 gcgtgcgcac tctcgcggtt cacccgcccg agccgccgct cgactgcgac gtagtctttt
     2461 cgagccttcc gggcggcgtc gcgcgcgagg ccgaggaggc tttcgcgcgc gcgggctacc
     2521 ccgtcatcag caactcgtcg gcgctcagga tggacgagga cgtgccgctc ctcatcccgg
     2581 agataaacca cgagcacctc gcgctcatag acgctcagcg ccggcgccgg ggctacggcc
     2641 gcggcttcgt cgtcaccaac ccgaactgct cgaccattgc gctggctctc gcgctcgcgc
     2701 ccctccacgc gcggttcggc gtcgaggccg tcatcgcgac gacgatgcag gccatctcgg
     2761 gcgcgggcta ccccggcgtc ccttcgctcg acatcacgga caacgtgctg cccttcatct
     2821 cgggcgagga ggagaaggtc gagacggagc cgcagaagat tt
//
LOCUS       DASPKR010000233        16181 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1841285, whole genome shotgun sequence.
ACCESSION   DASPKR010000233 DASPKR010000000
VERSION     DASPKR010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 16181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16181)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16181
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1841285"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..653)
                     /locus_tag="VD968_06345"
     CDS             complement(<1..653)
                     /locus_tag="VD968_06345"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HYE14044.1"
                     /translation="MRPRRSSQRGGLAPAGLLLLLLAACLAAPARTAQRRPGGAPAAT
                     KPAPAVAGWYTNPVFDFDFPDPTVIRATDGWFYAYATQAIVEGRMHNFQCARSRDAVR
                     WERMPDPLPYKPAWADQTQSFWAPDVHQRGETFFMYYSAVLNPEAAARFKREQGAAES
                     REDVFCLGVARSQAPAGPFIDSGRPMKCGLSFVNIDPMAFDDPKTGKKLLYWGSGFQP
                     "
     gene            complement(650..1360)
                     /locus_tag="VD968_06350"
     CDS             complement(650..1360)
                     /locus_tag="VD968_06350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14045.1"
                     /translation="MKLHDFRTAAAVVLLFGAAVAPPPASRGQQQQQQTQPSFEDWSD
                     DFNGDALDETKWERFSFEGAVGKIEVRDGQLRIRSQNKTRAGVRSKQSFSAERFSVEA
                     RLARVGPQIPEPGDKASPLGFATLAILFDGAGRNRVEWALTSDGTFEAWSVVDGRGER
                     LDNRKLGTKMKNPVMGIVRRGDEFLFVLNGPDSPPQEAQVGLTKTIKNMPRSFHVMLY
                     GYGSSENNWDAVRVVTMK"
     gene            complement(1381..3057)
                     /locus_tag="VD968_06355"
     CDS             complement(1381..3057)
                     /locus_tag="VD968_06355"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14046.1"
                     /translation="MPNSEPTRTTRTLAAALAASALLCLYGATAPARAQKRPSAARGA
                     SRGQHDAARAEALAAQGIEALERADEAGARALFEKALAADPENTTAHTYLGALADRAG
                     DLKEAERHFSAAALASPFLASARNNYGAILLRTGRPALAAAQFEASLKLDPRQPNALV
                     NLAQIRLASGKPEDLRSARELFERAQSVAPDPEIARAVVVVSLRLGDAPAASAAYRAY
                     SASAPSGGDKTAATHRAQLGAALLEGGLADEAVAELSAALAIDSSNVEALVALSRAHL
                     RRKDVPSAGRALEAGLSRGLEDARIYAALADVYEAGGYFENAIPAMRLAIARDPKNES
                     YHVRYGLLLNDTKAPAAAVIRLEEALKEFPNSSRLWLALGIAQLNHGRNEDAQRSFSR
                     ALELDPRSVPALAYLGTTQAERGQYAEAVRFYERAIEADDRLAVPYYLAADALLKFPE
                     IDAPRVEKYLSRAVELDGTFAPARYALARLHVRNERWAEAAAQLETVVRLDPNLAEAR
                     YQLGRVYARLKRADDAKREMDAFRQLSEAQKEKRESDRRELVRRLADVRF"
     gene            complement(3193..6891)
                     /locus_tag="VD968_06360"
     CDS             complement(3193..6891)
                     /locus_tag="VD968_06360"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE14047.1"
                     /translation="MRSHKLFAFVLAAFALAFTAAPVLAQSDRGSITGTVSDPNGAVV
                     GGATVRATSLDTGEVREATTTGEGGYTLPELRASLYRVSVEAQGFKTSTVEQFKVAVQ
                     VVHTLDFTLELGVVTDVVTVTSESTPVIQSDTPVRQTNVNERQVRELPLQVNAETAGR
                     SPLAFIFLDSNVTAAAGNGTNATNFRVSGGQGLGSEILIDGAATRRAQNGTFFTEVSP
                     SPNAFQEFTVSTSSYSAEFGNSSGGIVNFSIKSGGNQFHGEAYEYHRNDAFNANSYLN
                     NLSGLDRPRNHQNNFGFNVGGPMYFPRFGEGGPTYWSGKNRAFFFFNYEGYRFAESEN
                     VFLTVPTLRMRQGDFGELLTDPAILARFGPGGVRIFDPTSGGFGERTAIPGNNIPAYQ
                     TATGRTIIDPVGFNILQLFPLPTRQGVFQNYQASTQRPLTMNQYVGKADFVLTPMQTL
                     AFSYSYRKQNTIQGGAPRFPQPLVAAGRWNQFFVSHFARLQHNWTMSPNLLNHFNAGF
                     TRFSVANQNTTIGFNNTTLGLRANSTQNKAFPLIGFPGYSDPADPRGDPRSYQGMGST
                     FFHDQSGDNAVQLTDFMTLLRGNHSMRFGADVRIQQFNVSQLVHPGGEFNFRHNQTSN
                     VEADNEGWPIASLITGATEFSFNSVQTIDPGWRQFSHSYFFQDDWKLRQNLTVNLGIR
                     YDLPGLRTESKNRFRGFDPFTPNPAAGGRLGAIVGAGGQGGLQAEHESLASPDRTNIG
                     PRVGFAYAWNDRTVVRGGAGVYYAPIVYGAGGQNNLTGGTIGFNTPVQPNVNCGPPGA
                     RGCVGGVPDLFLRNYRATLPVDPAGQFLGSDVDYFDPDFKTSRTVQYSLDLQRELPWN
                     FAASIGYIGHRATRLRSNFERLNAIPFNALRLGNELLNRPLAEVNASERAFAASVGVP
                     LPASNNAVFPGFNGTVGQALRRFPQYRTITNQLESQGQSWYNAMQLKLDRRFSQGIQF
                     GASYTFSKLITDASEDLLGASPIGSLLQNPYDRESLRTVSPNSIPHVFVFNYIIEIPL
                     GKGRRFLDQGGVVNAILGGWQLSGIHRYQSGLPLVVRVTRQGAFGPDTTGFNTDIRPN
                     LTGQQILTSDPRSEARVRIINPAAFTAPPSYTNDAPPARREDGTVNPAYIAFYADPNR
                     FFGNAPPVIDQARDLPFLSENLSLLKKFYFTETVAFEVGAEAFNIFNRHRLAQPNSDL
                     SAGGDFGFSGVDAGYRQREIQIRVRFMF"
     gene            7506..7814
                     /locus_tag="VD968_06365"
     CDS             7506..7814
                     /locus_tag="VD968_06365"
                     /inference="COORDINATES: protein motif:HMM:NF012442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HYE14048.1"
                     /translation="MATKAGKKRMSQSEVVNHFAEKFELKRAQVKELFEELASLAGSE
                     VKENGEFALPGFGKLVLSERKAREGRNPQTGETIQIPAKTTLKFRLSKAMKDTVVPKK
                     "
     gene            8255..8497
                     /locus_tag="VD968_06370"
     CDS             8255..8497
                     /locus_tag="VD968_06370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14049.1"
                     /translation="MIAIETYPLTERLKMIDHIQARRYTKLMGPALDIATEGIIRHLR
                     ACDRMDVNPDVAAVREIIDDALNGRRVFAETFNNAA"
     gene            complement(8603..9727)
                     /locus_tag="VD968_06375"
     CDS             complement(8603..9727)
                     /locus_tag="VD968_06375"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HYE14050.1"
                     /translation="MKEQDSQRRHLARWIALLAATACALWLCWRMLQPFIEVLLWAVV
                     LVILFYPVHKRIEARLNNAGWSAVLSCLLVMVVILVPLTLLTLAVVREMSGFVQSLQQ
                     SAATLLDPNSPYLGRFINWLGQYVDLTNFNSQEFVAERVKNISGGAIAGRTLGVLGGA
                     VGVVVEIFFVIFTMYYLFRDGDRLRSALRSALPLERSKATEIFERTRDVISASVYGVL
                     VIATIQGVLGGLAFWTLGLPSSLLWGVVMIFLSMIPMAGAFIVWVPAAIYLAVTGQYA
                     KATILVVIGILVIGSVDNFLRPKLVGERTRLHELLIFFSVLGGLQVFGVLGLVLGPVI
                     VAITIALLDVLRHADGEDEGKDETLLEEQADLRDVPEQSA"
     gene            9816..9888
                     /locus_tag="VD968_06380"
     tRNA            9816..9888
                     /locus_tag="VD968_06380"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9849..9851,aa:Arg,seq:tct)
     gene            9946..10019
                     /locus_tag="VD968_06385"
     tRNA            9946..10019
                     /locus_tag="VD968_06385"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9980..9982,aa:His,seq:gtg)
     gene            10534..13317
                     /locus_tag="VD968_06390"
     CDS             10534..13317
                     /locus_tag="VD968_06390"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE14051.1"
                     /translation="MRRNSTARALALALTLLLTIPAGAAGAPQQPTRNTRGSISGIVS
                     DPSGAVVKDTEVSLVNAQQAVIRDTRTDAEGRFQFTDVPVGSYVVTVSRPDFGSRHVA
                     VQVTAGGSAGLSIVLQPGQVSEQVTVTAEAGQVGDARNTAQPVNVIREEEIAERATEV
                     VAQVVDEEPGVNLQRTSPSLSAVFVRGMTGRNVAVYVDGVRYTTSAQRGGVGTFFSLI
                     EPSSLEAVEILRGPNSSQYGSDVLGGVVNFISRAPIYGGHDGEWHGNSSVFYTSATNG
                     FGGHNLLTYGTRRYGLLLNVNARRINRLRPGAGLDSHAAVTRFLGIPSDVLGERLPDT
                     AFTQYGGLIRTSFNLHDTTQLLFSYARNQQDGGRRYDQLAGGDGNLIADLRNLMTDLF
                     YARLVRQNLGPFDNSQFTFSFNGQREERVNQGGQGNPFGAITNQRERTNVLGFNFNVD
                     KRTGEKNTLTLGADVYRDKISAPAFTTDPLTGVVTPSRPRIPHGARYLSYGFFAQDVF
                     TAVPERLRLSGALRYSVASYESRAENAPVVGGRPLFPDDSARFRALSGRIGLVLTVGG
                     GFDIAAKYTRGFRAPNTTDLGIIGLVGTGFEVDASTAAALGGFIGTTAGTDAVSSGIP
                     VTPLGPEKSDSFDLSLRYTRSRFRAELTGFTNKLSDAYFDQALVLPPGAVGQFLGGEQ
                     IVRQNENGLVFVAAATSPVLVRVNYDDARFNGVEFNTEARLNRDFTANGNFTYIRAYS
                     LLNGLPPNVEGGIPPATGFLSLRYQPRGTARYWVEAYSILAGRQNRLSSLDLADRRTG
                     AARSRAQIQNFFRRGACVRGITTPGTTGCGSAGGILVATGETLAQVQNRLLPVGATIN
                     GVTVVNNDTAVPLFPYLPGYGLVGLRGAFRFGERSEVFLDFENVADKQHRGISWGVDG
                     PGRSVTARYRLRF"
     gene            13792..14391
                     /locus_tag="VD968_06395"
     CDS             13792..14391
                     /locus_tag="VD968_06395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14052.1"
                     /translation="MRPCSRLTLCALLLCLLVAPAAFAQKRFCPKPPPSPYKHDGQIA
                     TSFDGKSRAMRTTLQHPRAFGQGADLVYLAATFVHQDPRRPSRPTLDLILTTASPALK
                     LRGAGLAFVCDGQPCARGVGASYRSQTGDDGLTYDSVRLTLSYDEASAVTRARKVSAR
                     IGGTDVELTNNHLEALRELVSQLAPSPGRWGSEERLSAR"
     gene            complement(14485..15447)
                     /locus_tag="VD968_06400"
     CDS             complement(14485..15447)
                     /locus_tag="VD968_06400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14053.1"
                     /translation="MGSIRVRLTLAAVLAALCFAQGAASRAQKGNGDGARAAGRGDVR
                     SVTIPVIVRLPAKEPQTELQYLEGLEVFEDGERQEILSTRGAARSPMTLAVLIQDDLS
                     SSVNNEINGIKDFIRRLPPGSRVMVAYLRSGSLQVRQKFTSDLDRAARAVRIPVSSAD
                     AAPWNPFALTRDALNRFESQPVGRRAVLLVSDGIDISRGVEGSAPANGFDLQRAITEA
                     QRRGVAVYTIYSPTVGAAYRTLVSNGQGALARLAEETGGRAYFQGTGAPVSFDHFLRD
                     IDVLLSRQFALTYLSTHPEKGFHRVRVVASMAEGDIYHPSGYTR"
     gene            15607..>16181
                     /locus_tag="VD968_06405"
     CDS             15607..>16181
                     /locus_tag="VD968_06405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14054.1"
                     /translation="MTAGERLTARLLRWGPLLAFLAAALPLPAYFLLRYFTATEEIAV
                     WLLLAMSSLAVGSLVGVLAAVAVFLYRRVWERRLRERLAADGVTADEFSWFTSELTEA
                     QRRSLKEMEARSPLLADAYRETLAARITAERVLASARREKVAVEERLRSAAALQAPGR
                     AGLEQELQADSERISRVEREAAEHSAEIDARL"
BASE COUNT         2703 a         5321 c         5443 g         2714 t
ORIGIN      
        1 ggctggaagc ccgagcccca gtagagcagc ttctttccgg tcttcgggtc gtcgaaggcc
       61 atcgggtcaa tgttgacgaa agagaggccg cacttcatgg ggcggccgct gtcaatgaag
      121 gggccggccg gggcctgcga gcgcgcgacg ccgaggcaga aaacgtcctc acggctttcg
      181 gccgcgccct gctcgcgctt gaagcgcgcg gccgcctccg ggttgagcac ggccgagtag
      241 tacatgaaga aggtctcgcc gcgctggtga acgtcgggcg cccagaacga ctgagtctgg
      301 tcggcccaag cgggcttgta gggcagcggg tcgggcatgc gctcccagcg cacggcgtcg
      361 cgcgagcgcg cgcactggaa gttgtgcatg cggccttcaa cgattgcctg cgttgcgtag
      421 gcgtagaacc agccgtcggt ggcgcgtatg acggtagggt cggggaagtc gaagtcgaag
      481 acggggttcg tgtaccaacc ggcgactgcg ggcgcaggct tagtcgcggc gggcgcgccg
      541 cccggccgcc tctgcgcggt gcgcgcgggc gcggcgaggc acgcggccag gaggagaagg
      601 agcagcccgg ccggcgccag gcccccgcgt tggcttgagc gtctcggtct cacttcatcg
      661 ttacgacgcg cacggcgtcc cagttgttct cggacgagcc gtagccgtag agcatgacgt
      721 ggaagctgcg aggcatgttc tttatcgtct tcgtcaggcc gacctgcgct tcctgcggcg
      781 ggctgtcggg gccgttcagg acgaagagga actcgtcgcc gcgacgcacg atgcccatca
      841 ccgggttctt catcttcgtc cccaacttac ggttgtcgag ccgctcgccg cggccgtcaa
      901 cgaccgacca cgcctcgaac gtgccgtcgc tcgtcagagc ccactcgacg cggttgcggc
      961 ccgcgccgtc gaagaggatg gcgagcgtcg cgaaccccag cggcgaagcc ttgtcgcccg
     1021 gctcggggat ctgcgggccg acgcgcgcga gccgcgcctc gacgctgaag cgctcggcgc
     1081 tgaaagactg cttgctgcgg acgcccgcgc gcgtcttgtt ctggctgcgt atgcggagct
     1141 gcccgtccct gacttcgatt ttgccgacgg cgccctcgaa gctgaagcgc tcccacttcg
     1201 tctcgtcaag cgcgtcgccg ttgaagtcgt ccgaccagtc ttcgaaggaa ggctgcgtct
     1261 gctgttgctg ttgttgcccg cgcgaggccg ggggcggcgc gacggccgcg ccgaagagca
     1321 gcacgacggc ggccgcagtt ctgaagtcgt gtagtttcat acgagccccc ctgtcacaaa
     1381 ctagaagcgc acgtcggcga gccggcgcac cagctcgcgg cggtcgctct cgcgcttctc
     1441 cttctgcgcc tcgctgagct gtctgaaggc gtccatctcg cgcttcgcgt cgtcggcgcg
     1501 cttcaggcgc gcatagacgc ggcctagctg gtagcgcgcc tccgcgaggt tcgggtcgag
     1561 gcgcacgacc gtctccagtt gcgccgcggc ctcggcccat cgctcgttgc gcacgtgcag
     1621 ccgcgccagc gcgtagcgcg cgggggcgaa cgtgccgtcc agctcgacgg cgcgcgagag
     1681 gtacttctcg acgcgggggg cgtcaatttc ggggaacttg agcagcgcgt cggccgcgag
     1741 gtagtagggt acggcgaggc ggtcgtcggc ctcgatggct cgctcgtaga agcgcacggc
     1801 ctcggcgtac tgcccgcgct cggcttgggt tgtgccgagg taagcgagcg ccgggacgct
     1861 cctggggtcc agctcgagcg cgcggctgaa ggagcgctgc gcgtcctcgt tgcgaccgtg
     1921 gttgagctgc gcgatgccga gcgcgagcca gaggcgcgag gagttcggga actctttgag
     1981 cgcctcttcc agccggatga cggcggcggc gggcgcttta gtgtcgttta agagcagccc
     2041 gtaacgaacg tggtatgact cgttcttagg gtcgcgcgcg atggctagcc gcatggcggg
     2101 gatcgcgttc tcgaagtagc caccggcctc gtaaacgtcg gcgagcgccg cgtagattct
     2161 cgcgtcctcg agcccgcgcg ataagcccgc ttcgagcgcg cgcccggcgg acggcacgtc
     2221 cttgcggcgc aggtgagcgc gcgagagggc gaccagcgcc tctacgttcg acgaatcaat
     2281 cgcgagcgcc gcgcttaatt ccgccacagc ttcgtccgcg agcccgcctt cgagaagggc
     2341 tgcgccgagc tgcgctcggt gcgtggccgc agtcttgtcg ccgcccgaag gcgcagaggc
     2401 cgagtaggcg cggtaggcgg ccgaggcggc gggcgcgtcg ccgagccgga gcgaaacgac
     2461 gacgacggcg cgcgctatct cggggtcggg cgcgaccgat tgcgcgcgct cgaagagctc
     2521 gcgggccgag cgcaggtctt cgggcttgcc ggaggcgagg cgtatctgcg cgaggttgac
     2581 gagggcgttg ggctggcggg ggtctagctt cagggaagcc tcgaactgcg cggcggcgag
     2641 cgccggccgt cccgtgcgga ggagtatcgc gccgtagttg ttgcgcgccg aggcgaggaa
     2701 gggcgaggcc agcgccgccg ccgagaagtg gcgctcggcc tccttcaaat cccccgcgcg
     2761 gtcggcgagc gcgccgaggt acgtgtgcgc cgtcgtgttc tcagggtcgg ccgcgagcgc
     2821 cttctcgaag agggcgcggg cgccggcctc gtcagcccgt tcgagcgcct cgatgccctg
     2881 cgccgcgagc gcctcggccc gcgccgcgtc atgctgcccc cgcgacgcgc cgcgcgcggc
     2941 ggacggtcgc ttctgcgcgc gggccggcgc agtcgcgccg taaaggcaga ggagggcgga
     3001 ggcggcgagc gccgccgcga gcgtcctcgt cgtgcgggtc ggttcggagt tgggcacgtc
     3061 gttcgcgagc gggcttggaa gcgggccggg ggaggcgccg ccgtaagagc gacggcgcgg
     3121 gaaaagtcta tgaggacttc ccccgcgccc cgcgaaggcc aaagtagctc tggccgcctg
     3181 ccgccggccg ggctagaaca tgaacctcac gcgtatctga atctcgcgct gccggtagcc
     3241 ggcgtcaacg ccggagaagc cgaagtcgcc gcccgcgctc aggtcgctgt tgggctgcgc
     3301 gaggcggtgg cggttgaaga tgttgaaggc ctcggcgccc acctcgaacg ccaccgtctc
     3361 cgtgaagtag aacttcttca ggaggctcag gttctcgctc aggaacggca ggtcgcgcgc
     3421 ctggtcaatg acgggcggcg cgttcccgaa gaagcggttc gggtcggcgt agaaggcgat
     3481 gtaggccggg ttgaccgtgc cgtcctcccg ccgcgccggc ggcgcgtcgt tcgtgtagct
     3541 cggcggcgcc gtgaaggcgg ccgggttaat gattcggacg cgggcctcgg agcgcgggtc
     3601 gctcgtcagg atctgctgcc ccgtcaggtt cgggcgtatg tcggtgttga agcccgtggt
     3661 gtcggggccg aaggcgccct gccgcgtgac gcgcacgacg agaggcaggc ccgactggta
     3721 gcggtgtatg cccgagagct gccagccgcc gagtatggcg ttgacgacgc cgccctggtc
     3781 gaggaaccgc cggcccttgc cgagcggaat ctcgataatg tagttgaaga cgaacacgtg
     3841 cgggatgctg ttcggcgaga ccgtccgcag cgactcgcgg tcgtaggggt tctgcaagag
     3901 gctcccgatg ggcgaggcgc cgagcaggtc ttcggacgcg tccgttatca gcttggagaa
     3961 ggtgtaggag gcgccgaact gtatcccttg cgagaagcgg cggtcgagct tgagctgcat
     4021 ggcgttgtac cagctctggc cctgactctc caactggttc gtgatggtgc ggtactgcgg
     4081 gaagcgccga agcgcttgcc cgacggtgcc gttgaagccc gggaagacgg cgttgttgct
     4141 ggccggcagc ggcacgccga cgctagcggc gaaggcgcgc tcggaggcgt tcacctcggc
     4201 gagcggccgg ttgagcaact cgttaccgag cctcagggcg ttgaacggga tcgcgttcag
     4261 gcgctcgaag ttcgagcgca ggcgcgttgc cctgtggccg atgtagccta ttgaggcggc
     4321 gaagttccag ggcagctcgc gctggaggtc taggctgtac tggacggtgc gcgaggtctt
     4381 gaagtccggg tcgaagtagt caacgtcgga gccgaggaac tgccccgcgg ggtcaaccgg
     4441 gagcgtggcg cggtagttgc gcaggaagag gtcggggacg ccgccgacgc agccccgagc
     4501 gccgggaggc ccacagttga cgttaggctg tacgggcgtg ttgaacccga tggtcccgcc
     4561 cgtcaggttg ttctgcccgc ccgcgccgta aactatcggc gcgtaataga cgcccgcgcc
     4621 gccgcgcacg accgtgcggt cgttccaggc gtaggcgaag ccgacgcgcg gtccgatgtt
     4681 ggttcggtcg ggcgaggcca gcgactcgtg ctcggcctga aggccgccct gcccgcccgc
     4741 gccgacaatc gcgccgaggc gcccgcccgc cgcagggttg ggcgtgaacg ggtcgaagcc
     4801 gcggaagcgg ttcttcgact cggtgcgcag gcccggaagg tcgtagcgga tgccgaggtt
     4861 gacggtcagg ttctgcctga gcttccagtc gtcctggaag aagtaggagt gcgagaactg
     4921 gcgccagccg gggtcaatgg tctgcacgct gttgaaggag aactcggtcg cgcccgtgat
     4981 caggctcgca atcggccagc cctcgttgtc ggcctcgacg ttcgaggtct ggttgtggcg
     5041 gaagttgaac tcgccgccgg ggtggacgag ctggctgacg ttgaactgct gtatgcgcac
     5101 gtcggcgccg aagcgcatcg agtgattgcc gcgcagcagc gtcatgaagt ctgtgagctg
     5161 cacggcgttg tcgcccgact ggtcgtggaa gaaggtcgag cccatgcctt ggtacgagcg
     5221 cgggtcgccg cgcgggtcgg ccgggtcaga gtagccgggg aagcctatta gcgggaacgc
     5281 tttgttctga gtcgagttgg cgcggaggcc gagcgtcgtg ttgttgaagc ctatggtcgt
     5341 gttctggttc gcgacgctga agcgcgtgaa tcccgcgttg aagtgattga gcaggttcgg
     5401 gctcatcgtc cagttgtgct ggaggcgcgc gaagtgcgag acaaagaact ggttccagcg
     5461 gccagcggcc acgagcggct gggggaagcg cggtgccccg ccctgaatcg tgttctgctt
     5521 gcggtacgag tagctgaagg cgagcgtctg catcggcgtc agcacgaagt cggccttgcc
     5581 gacgtactgg ttcatcgtca gcggccgctg cgtcgaagcc tggtagttct ggaagacgcc
     5641 ctggcgcgtc ggcagcggga agagctgaag tatgttgaag ccgacggggt caatgatcgt
     5701 gcgcccggtc gccgtctggt aggccgggat gttgttgccg ggtatggccg tgcgctcgcc
     5761 gaagccgccc gaggtcgggt cgaatatgcg gacgccgccc ggcccgaagc gcgcgaggat
     5821 ggcggggtcg gtcagaagct cgccgaagtc gccctgccgc attctcaggg tcggcacggt
     5881 caggaagacg ttctcggact cggcgaagcg gtagccctcg tagttgaaaa agaagaaggc
     5941 gcggttcttg ccgctccagt aggtcgggcc gccctcgccg aagcgcggga agtacatcgg
     6001 gccgccgacg ttgaagccga agttgttctg gtggttgcgc gggcggtcga ggccgctcag
     6061 gttgttcagg tagctgttgg cgttgaaggc gtcgttgcgg tggtactcgt aggcctcgcc
     6121 gtggaactgg ttgccgcccg acttgatcga gaagttcacg atgccgcccg aggagttgcc
     6181 gaactcggcc gagtagctcg aagtcgagac cgtaaactcc tggaaggcgt tcgggctcgg
     6241 cgagacctcc gtgaagaacg tcccgttctg cgcgcggcgc gtggcggcgc cgtcaatcag
     6301 gatctcgctc cccaacccct ggccgccgct cacgcggaag ttcgtcgcgt tcgtgccgtt
     6361 gccggccgcg gccgtcacgt tgctgtcgag gaagatgaag gcgaggggcg agcggccggc
     6421 cgtctcggcg tttacctgaa ggggcagctc cctgacctgc cgctcgttga cgttcgtctg
     6481 gcggacgggc gtgtcggact ggatgacggg cgttgactcg ctcgtaaccg taacaacgtc
     6541 agtgacgacg ccgagctcga gcgtgaagtc cagggtgtgg acgacctgca cggccacctt
     6601 gaactgctcg accgtggagg tcttgaaccc ttgtgcctca acgctcacgc ggtagaggct
     6661 cgcccgcagc tccggcagcg tgtagccgcc ctcgccagtc gtcgtcgcct cgcgcacctc
     6721 gccagtgtcc aggctcgtgg ccctgacggt cgcccctccc actacggccc cgttcgggtc
     6781 agacaccgtc cccgttatcg agccgcggtc actctgcgcg agaacggggg cggccgtaaa
     6841 agcaagcgcg aaggccgcca gcacaaaagc gaaaagcttg tgagacctca taaactcccc
     6901 ttcccttcaa ctgagaagcc ctacttcggt aaagaacagg cgcaggcgcc cgtgtgaacg
     6961 gctggcgccg aatgaccgga aaccctcggg cccgtcccaa agcgcccggc tcgcatgaag
     7021 gaggcggcgc gcaggaggcc cctaagggga aaaatcggga gacccgctcg cggaaagctg
     7081 aaattgttac ttaggaagtt gaacccggcc taatcaaccg cctcaaagcc acgaaaaaac
     7141 ggttaactaa gatggtcggc ttatagcaag ttacgctaac tgttgtcaac acttttataa
     7201 tcgcacgctt tcccgtaggc cgcgccccct tcccccaagc ccgtaccttt aaagtgaggc
     7261 ccgcgggccg gtttaagcgg ttttccaagc ctctttcagg tttcgggccg tcggacggcc
     7321 acgggcgccc tgccccggaa gcgtcggggg cggagggggc cgccgacggg ataggcttaa
     7381 tttttgcgct aaaaggcaaa aaaagtggct tttttccgag acgtgaagcc gcgcagtgtg
     7441 atatatgtgc tttcgaaagc ttttcgattt cttcccgatt ccgcaggagg taggcacacc
     7501 aacccatggc gacgaaagca ggcaagaagc gcatgtccca gtctgaagtg gttaaccact
     7561 tcgctgaaaa gttcgagcta aagcgtgctc aggtcaaaga gctgttcgag gagctggcga
     7621 gcctcgcggg cagcgaagtc aaagagaacg gcgagttcgc gctgcccggc ttcggcaaac
     7681 tcgtcctctc cgagcgcaag gcgcgcgagg ggcgcaaccc gcagacgggc gaaaccattc
     7741 agattccggc caaaaccacg ctcaagttcc gtctgagcaa ggccatgaag gatacggtcg
     7801 taccgaaaaa atagtcggcg cccggcaagc acgccatttt cttttcgata cgcagaaaga
     7861 ccgcctgcgg ggggttgata aggctcggcc tgcatttcaa ccgcccctac ggcggtcttt
     7921 ccttcttctc aagcccgcct ctaaaacttt aattatttaa gcacttacgg tgccgcttcc
     7981 tgtcccgcgc tcttagtgtg ccggttaggg gcggccggca gaaaattttt ctagattttt
     8041 gggcaatttg catgtaatat cccttttttc ctagccacct ctgacgacga cagagtgtag
     8101 ctttcgagca agcggggcgg ggttgcgtaa attttctggg taatgcaatc aattcgcatc
     8161 ccggaaatta gcgaatgcat ctaattttca ctaatacaga gccttccgat tctgttccat
     8221 ccgaaggccg gtaaaaataa ggagctggcg aacagtgata gcaatagaga cttacccgct
     8281 gacggagcgg ctgaaaatga ttgaccacat ccaggcccgt cgctacacga agctgatggg
     8341 cccggccctg gacatcgcga ccgagggcat catacgtcac ctccgcgcct gcgacaggat
     8401 ggacgtaaac cctgacgttg ccgcggttcg cgagataatt gacgacgctc tgaacgggcg
     8461 ccgcgtcttc gccgagactt tcaacaacgc cgcctaaggc ggggctgaag cggcgaatgc
     8521 cgcagagatt gacggagggg ccgggttccc agcggcggaa cccggccccc aatttttgtc
     8581 tccctgtcgc ccttaaacga gttcaggccg actgctcggg aacgtcgcgc aggtcggcct
     8641 gctcttccag gagggtttcg tctttgccct cgtcctcgcc gtcggcgtga cgcagcacgt
     8701 ctagcagggc gatggtgatg gcgacgatga cggggccgag cacgagcccc agcacgccga
     8761 agacctgtag gccgccgagc acggagaaga agatgagcag ctcgtgcagc cgcgtcctct
     8821 cgccaaccag cttcggccgc aggaagttgt caaccgagcc gatgacgagg atgcctatca
     8881 cgaccagtat cgtcgccttc gcgtactggc ccgtgacggc taggtagatg gcggccggca
     8941 cccagacgat gaaggcgccg gccatcggta tcatcgagag gaagatcatc acgacgcccc
     9001 acagcagcga tgagggcagg ccgagcgtcc aaaaggcaag cccgccgagg acgccctgaa
     9061 tggtcgcgat gacgaggacg ccgtaaacgc tcgcgcttat cacgtcgcgc gtgcgctcga
     9121 aaatctcggt cgcctttgag cgctccagcg gcagcgccga gcgcagggca gagcgcaggc
     9181 ggtcgccgtc gcggaagagg tagtacatcg tgaagatgac gaagaagatt tcgacgacga
     9241 cgccgacggc cccgcccagg actccgagcg tgcggccggc tatcgcgccg ccgcttatgt
     9301 tcttcacgcg ctcggcgacg aactcctgcg aattgaagtt cgtcaggtca acgtactggc
     9361 ctagccagtt gatgaagcgg cccaggtagg gcgagttggg gtcgagtagc gtcgcggcgc
     9421 tctgctggag gctctggacg aagcccgaca tctcgcgcac gaccgctagc gtcaggagcg
     9481 tgagagggac gagtatgacg accatgacga gcaggcagga gagcaccgcg ctccagccgg
     9541 cgttgtttag gcgcgcctct atgcgcttgt ggacggggta aaagagtatg acgaggacga
     9601 cggcccagag cagaacctct atgaagggct gtagcatcct ccagcacagc cagagggcgc
     9661 aggcggtcgc cgccagcagc gctatccacc gtgcgaggtg cctcctctga ctgtcctgct
     9721 ccttcatgcg cggcacactt taccataacg cgggccggag gattgagggc gcggcggcgc
     9781 gcgtgctaac atttcgattg acttaaagag cgttcgcccc tgtagctcag cggatagagc
     9841 atctgccttc taagcagagg gtcgcaggtt cgagtcctgc cgggggtatg gcagcttgcc
     9901 cgcgcgacga acgtccgcta ctatttcgtt cgacgctttc ccgtggcggc tatagctcag
     9961 ttggttagag cgcgtgactg tggatcacga ggccgagggt tcgaacccct ctagccgccc
    10021 tttaagaatc aaccacttgc ggccaggccc ccatcctcct gcttcgcgcc tgtgacaatc
    10081 ttgagacagc gcctcctcta aaactcgtcc atcgagacta tcgtggactg cttcgagtgg
    10141 tcggcgatgt ggatgtagcg cttcaccgtc tccgtgttgc tgagccacat cagctccatg
    10201 atcctgtgct cgttggcgcc ggcctcggcc agccgcgcgc cgagaatctt tactctcgaa
    10261 ggccgtcaag cccgcagccc tcctgctgtt catgtccatg ctcgcggcgg ccgccgacgc
    10321 gcgcatcctc tctgcgattc acaccgtcgc cgagtgcgcc gtcaaactgc tcgcctgaag
    10381 ctcgccttca ctcccctcaa aaaagcaggc cgaggggcga cggccctgcg cgcctgggcg
    10441 gaactacggt cgctggtagt agttggcggc atcgtgtaat ctcgccgtgg gcgaactccc
    10501 cccaactaaa caggctgtaa ggcaattcgg tctatgagaa gaaacagcac cgcgcgggcg
    10561 ctcgcgctcg ccctcacgct cctactcacg attcccgcgg gcgcggccgg cgcgccgcag
    10621 cagccgactc gcaacacgcg cggcagcatc tccggcatcg tcagcgaccc ctcgggcgcg
    10681 gtcgttaaag acaccgaggt ctctctcgtc aacgcccaac aggccgtcat ccgcgacacg
    10741 cggactgacg ccgaaggccg attccagttc acggacgttc ccgtaggctc ttacgttgta
    10801 acggtctcgc gccccgactt cggcagccgc cacgtggccg tccaggtgac ggccggcggt
    10861 tccgcgggcc tgagcatagt cctacagccg ggccaggtga gcgagcaggt gacggtgacg
    10921 gcagaggccg gccaggtcgg cgacgctcgc aacacagcgc agcccgtcaa cgtcatccgc
    10981 gaagaggaga tcgcggagcg cgccacggaa gtcgtcgcgc aggtggttga cgaggagccg
    11041 ggcgtgaacc tacagcgcac gagccccagc ctgagcgcgg tcttcgtgcg gggcatgacg
    11101 ggccgcaacg tcgccgtcta tgttgacggc gtgcgctaca cgacgagcgc gcagcgcggc
    11161 ggcgtcggca ccttcttcag cctcatagag ccttcgagcc tcgaggcggt cgaaatcctt
    11221 cgcgggccga acagctcgca gtacggctct gacgtgctcg gcggcgtcgt caacttcatc
    11281 tcgcgcgcgc ccatctacgg cggccacgac ggcgagtggc acggcaactc cagcgtcttc
    11341 tacacctcgg ccacgaacgg cttcggcggc cataacctcc tgacctacgg cacgcgccgc
    11401 tacggcctgc tgctcaacgt gaacgcgcgc cgcataaacc ggctgcggcc gggcgccggg
    11461 ctcgactcgc acgcggccgt gacacgtttc ctcggcatcc cgtcagacgt tctgggcgag
    11521 cgcctgcccg acacggcgtt tacgcagtac ggcgggctga tccgcaccag cttcaacctc
    11581 cacgacacga cgcagctact cttcagctac gcgcgcaacc agcaggatgg cggccggcgc
    11641 tacgaccagc tagcgggtgg cgacggcaac ctcatcgcag acctgcgcaa cctcatgacc
    11701 gacctcttct acgcgcgcct cgtcaggcag aacctcggcc ccttcgacaa ctcgcagttc
    11761 accttctcct tcaacggcca gcgcgaggag cgcgtgaacc agggcgggca gggcaacccg
    11821 ttcggggcca tcacgaacca gcgcgagcgc accaacgtcc tcggcttcaa cttcaacgtg
    11881 gacaagcgga cgggagagaa gaacaccctc acactcgggg cggacgttta ccgcgacaag
    11941 attagcgcgc cggccttcac caccgacccc ttgacgggcg tcgtcacgcc ttcgcggccg
    12001 cgcatcccgc acggcgcgcg ctacctctcc tacggcttct tcgcgcagga cgttttcacg
    12061 gccgtccccg agcgcctgcg cctgagcggc gcgctacgct acagcgtcgc ctcctacgag
    12121 tcgcgcgcag agaacgcgcc cgtcgtcggc gggcgccccc tcttccccga cgacagcgcg
    12181 cgcttccgcg ccctctcggg ccgcatcggc ctagtcctca ccgtcggcgg cggcttcgac
    12241 atcgccgcga agtacacgcg tggcttccgc gcgccgaaca cgacagacct cggcatcatc
    12301 ggcctcgtcg gcacgggatt cgaggttgac gcctcgaccg cggccgcgct cgggggcttc
    12361 ataggcacga cggccggcac cgacgccgtc tcctccggca tccccgtcac gcccctcggc
    12421 cccgagaaga gcgacagctt cgacctgagc ctccgctaca cgcgctcgcg cttccgcgcc
    12481 gagttgaccg ggttcacgaa caagctctcg gacgcttatt tcgaccaggc gctcgtgctg
    12541 ccgccgggcg ccgtagggca gttcctaggc ggcgagcaga ttgtgaggca gaacgagaac
    12601 ggcctcgtct tcgtggccgc ggcaacgagc cccgtgctgg tgcgcgtcaa ctacgacgac
    12661 gcacgcttca acggcgtcga gttcaacacg gaagctcgcc tcaatcgaga cttcacggcc
    12721 aacggcaact tcacttacat acgcgcctac agccttctga acggcctgcc gcccaacgtc
    12781 gagggcggca tcccgcccgc cacaggcttc ctcagcctgc gctaccagcc gcgcggcacc
    12841 gcccgctact gggtcgaggc gtactcgatt ctggccgggc gccagaaccg cctgtcttcg
    12901 ctcgacctcg cagaccggcg gacgggcgcg gcgcgctcgc gcgcgcagat acagaacttc
    12961 ttccggcgcg gagcttgcgt gcgcggcata acgacgccgg ggacgacggg gtgcggctcg
    13021 gccggcggca tactcgtcgc gaccggcgag actctggcac aggttcagaa ccgcctgctc
    13081 cccgtcggcg cgacgattaa cggcgtgacc gtcgtcaaca acgacacggc tgtccctctc
    13141 ttcccttatc tgcccggcta cggcctcgtc ggcctgcgcg gagccttccg cttcggcgag
    13201 cgctccgaag tcttcctcga cttcgagaac gtcgccgaca agcagcaccg cggcataagc
    13261 tggggcgttg acggccccgg ccgctcggtc acggcccgct accgtctcag gttctgacgc
    13321 cggctcggga aacggaatcc ggggcggcgg gcggcgcaat cagtttgtcg aaaaaaagca
    13381 atggcgcccg ccgccccgat tgtttatatt ggaagtgcgc cccggccgta gggcgcgcct
    13441 cgcagacagc cgcccctccc cggccggctc tccccgcagc cgcccaccag cctgcggcac
    13501 gaactgaaac gaaaggcagt cgcggttttt ccgtccggcg cgcgtcgggt ctggaaaata
    13561 tccgcgtttg atgttagtct ctcgccgccg gcgagccgca aagagcggac gagcggcaag
    13621 cagttctgcc tttccccgtt gttcctaact tataccggat gacgaagcgg cccgagcaag
    13681 ccgaacttgc gcccgcctgc gcgcggtcat gtgcgcgctc gctccgtgcc gcgccccgaa
    13741 gcctcatagc tctcccagcc ctattcgaga acgagcccga aaggattccc catgcgcccg
    13801 tgttcccgtc tgaccctttg cgccctcctg ctctgcctgc tcgtggcgcc ggccgctttc
    13861 gcacagaaac gcttctgccc taagccgccg ccctccccct acaagcacga cggccagatc
    13921 gccaccagct tcgacggcaa gtcgcgcgcg atgcggacga cccttcagca cccgcgcgcc
    13981 ttcggccagg gcgccgacct cgtctatctc gccgctacct tcgtccacca ggacccgcgc
    14041 cgcccgtcgc ggccgacgct cgacctgata ctcacgaccg cctcgcccgc gctcaagctg
    14101 cgcggcgccg gcctcgcctt cgtctgcgac gggcagccgt gcgcgcgcgg cgtcggcgcg
    14161 agctacaggt cgcagaccgg cgacgacggc ctcacctacg actccgtgag gcttacgctt
    14221 tcttacgacg aggcgagcgc cgtcacgcgc gcgcgtaagg tttcggcgag gatcggcggg
    14281 acagacgtgg agttgacgaa caatcacctc gaagcgttga gggagcttgt cagccagctc
    14341 gccccctcgc ccggccgctg gggctcggaa gagaggctga gcgccaggta gccgcgaaca
    14401 acgccgcgaa agtgtagcgg gcgggcggac gttgacgaca gcgttgctgt cgtcaacgtc
    14461 cggccgcccg ccgtattttg ttcgtcagcg ggtgtagccg ctcgggtggt atatgtcgcc
    14521 ctcggccatc gaggcgacga cgcggacgcg gtggaagccc ttctcagggt gtgtcgaaag
    14581 gtacgtgagc gcgaactgtc tcgacagcag cacgtcaatg tcgcgcagga agtggtcgaa
    14641 gctgacgggc gcccccgtgc cttggaagta ggctcgcccg cccgtctctt ccgcgaggcg
    14701 cgccagcgcc ccctgcccgt tgctcacgag cgtgcggtac gcggccccga ccgtcggcga
    14761 gtagattgta tagacggcga cgccgcgccg ctgcgcctcg gttatcgcgc gctgcaaatc
    14821 gaacccgttc gccggggccg agccctctac cccgcgcgag atgtctatgc cgtcgctcac
    14881 aagtagcacg gcgcggcggc cgacgggctg cgactcgaag cggttgagcg cgtcgcgcgt
    14941 gagcgcgaac gggttccagg gcgcggcgtc ggccgacgag acgggtatgc gcaccgcgcg
    15001 ggccgcgcga tcgaggtcgc tcgtgaactt ctgccgcacc tgaagcgagc ccgaccgtag
    15061 gtacgctacc atcacgcgcg agcccggcgg cagacgccgt atgaaatcct tgatcccgtt
    15121 tatctcgtta ttgaccgaag aggagaggtc gtcctgaatc agcaccgcga gcgtcatcgg
    15181 cgagcgcgcc gcgccgcgcg tcgagagaat ctcctgccgc tcgccgtcct cgaaaacttc
    15241 caagccctca aggtactgaa gctcggtctg cggctccttc gcaggcaggc gcacgatgac
    15301 ggggatggtc acggagcgca cgtcgccgcg gcccgccgcg cgggcgccgt ccccgttccc
    15361 cttctgcgcg cgcgacgcag cgccctgggc gaaacagagc gcggccagga cggccgcaag
    15421 cgtaagtctc actctgatac ttcccatcac ccctccttta ggccggcccc gcgaaggggc
    15481 ctccgccttt ccctcgccgg cattataact tgtaccgccg ccccgcacgt atcgggattt
    15541 gacgcgcggc cgactcgcgc acacaatagc cgcaaagtga tggacgaaaa gcgtgccggt
    15601 aaaaggatga ccgcgggcga aaggctcacg gcgaggctgc tccgctgggg gcctctgctc
    15661 gccttcctcg ccgcagcgct ccccctcccc gcctacttcc tgctgcgcta cttcaccgcg
    15721 accgaagaga tagccgtctg gctgctgctc gcgatgagct cgctcgccgt aggctcgctc
    15781 gtcggggtct tggccgcggt cgccgtcttc ctctaccgaa gagtctggga gaggcgtctg
    15841 cgcgagcggc tcgccgccga cggcgtgacg gccgacgagt tctcctggtt cacctccgag
    15901 ttgacggagg cgcagaggcg ctcgctcaaa gaaatggagg cccggagccc cctgctcgcc
    15961 gacgcatacc gcgaaactct ggccgcgcgc ataacggccg agcgggtgct cgcgagcgcg
    16021 cggcgcgaga aggtcgccgt cgaggagagg ctccgcagcg ccgcagcctt gcaggcgccc
    16081 ggccgcgcgg gtctagaaca ggagttgcag gccgacagcg agcgcatctc ccgcgtcgag
    16141 cgcgaggcag ccgagcactc ggccgagata gacgctcggc t
//
LOCUS       DASPKR010000234         8128 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_547802, whole genome shotgun sequence.
ACCESSION   DASPKR010000234 DASPKR010000000
VERSION     DASPKR010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8128)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8128
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_547802"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..1359
                     /gene="preA"
                     /locus_tag="VD968_06410"
     CDS             88..1359
                     /gene="preA"
                     /locus_tag="VD968_06410"
                     /EC_number="1.3.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF006183.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017113 - dihydropyrimidine dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0006210 - thymine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006212 - uracil catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
                     /protein_id="HYE14055.1"
                     /translation="MADLSVNFAGIQSPNPFWLASAPPTNMGSMIERAFDAGWGGAVW
                     KTLGEPIRNVCSRLASIDGAGQRMIGLNNIELITDRPLEVNLREVSEVKRKYPKHALI
                     VSLMVESRREAWHEIVKRVEGAGADGLELNFGCPHGMSERGMGSAMGQVPDYTCMVTE
                     WVKEVATVPVIVKLTPNVTSINPPARAAVRGGADALSLINTINSVMGVNLDTLVPHPN
                     VAGMAAHGGYCGPAVKPIALNMVSELARDPEVTVPISGIGGISNWRDAAEFLALGATT
                     VQVCTAVMHYGYRIVEDMIDGLSNYLDEKGFASARDFVGASAPRVTDWGNLDLNYKTV
                     ARIDHAKCIQCNLCHVACEDGAHQCIPLVQLNGKRYPVVDEHECVGCNLCYLVCPVPG
                     CISMVRLDDGSSPLTWRQLTSAQPPTTSTTD"
     gene            1391..1921
                     /locus_tag="VD968_06415"
     CDS             1391..1921
                     /locus_tag="VD968_06415"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HYE14056.1"
                     /translation="MRKVTFGGANSLDNFIAREDGAVDWLLWGEEAASYMKEYWQTID
                     TVVMGRKTYEVALKFGMKSYPGVKNYVFSRTMKESPDRRVKLVREDAAEFVSGLKRRK
                     GKDICVMGGGELARSLFEADLIDEIGFNIHPVLLGRGVPLFHEMSRQIDLELLECRPF
                     KNGCVLVTYRVKHREP"
     gene            2236..5673
                     /locus_tag="VD968_06420"
     CDS             2236..5673
                     /locus_tag="VD968_06420"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE14057.1"
                     /translation="MRFRLLFAAIALALAAAPALAQTSRGTVSGVVTDPNGAVVAGAT
                     VTLTNLSTEVSRTTTSNDEGFYRFDAVDPGNYSIKFSAQGFSDLTKTNIPVQAGLVAD
                     IGGQLTLGQAEITIDVTAEGGALLQTEAPVRGGNIPETQITELPIALRNPVSLALTLP
                     GISTNRYGAGVATFSVNGARQRSNNFLLDGTENNDISVAGQGFQVTNTDAVKEVSVQT
                     SNYDAEFGRAGGAVVNVITKSGTNEFHGTLSYLGDSTRDDAITAQGSRSPDVQARGHN
                     LPGTEHWFSGTVGGPVILPRLGEGGRVFGYDGRNRTFFFLGLQDRRQGSTSSTSVIAP
                     TAAGRARLRSLFPAGVNPRVDTYLAVTNGVNGTANPFTLDLGLGRGGIEFATASPVYA
                     QTLANFQAQVRIDHQIGPNDQFSARYVSDFQVLPVGGVLPGSFPDLITSQANKYQNFL
                     LTETHVFSPNLTNEARLSYNRIDLSFPLDPQNPLGLTLPCIQITTLSSCTTAGTQLSV
                     NPVFPQGRVANNYVVQDTMTLVRGDHTFRFGADLLMQRSRQFAPIIERGSLTYTDSSV
                     NVGGTNVSFTGFANFVDDFGGSGNATKDFGSPAYYPELFRQAYFFQDRWRANKELTLT
                     LGIRYENFGTPFNNLRTPAFTGLFNVDPVTFEGPFDDPNQIPGDNNNFAPTVGIAYSP
                     SADSGLLGFLFGGEHRSVIRAGYQIGYDSFYNNLASNAATAAPNLVATSTTSTPSAAS
                     PRGLANLSQQFPTARRPVTALDSQGNLLAPDLVNPYYQRWSIGLQREMPAGVILDMSY
                     VGSKGTRLYITEDLNPVVPAALRQFPRNPDGSLISVPAARLSTRYDPLQGSRNIRTNG
                     GDSNYHSGQLMLSRRFANNFSVTGSYTWSKLIDNGSDTFAQAGVNSQAFTALPSRFGG
                     LRADRGVSLYDRTHRAAITYVYAFPFFREQRGFAGHLLGGWEISGVTQFESGVPLNIL
                     NGTDADLIGGNLDRPVYNPDGQRGVRARIADATSPSPTGYVNPDVVIGTTSAGANIFQ
                     PIDPLQAEYIQAGSARFPVGNLGRNTLRTPGINNWDMNVMKRTRLGETTSLELRTEFF
                     NVFNHPQYGTPSVSSFLNVGQTGVGGTISSTLPGRFLDPRFGDGGGRVIRYQLKFIF"
     gene            complement(5899..7080)
                     /locus_tag="VD968_06425"
     CDS             complement(5899..7080)
                     /locus_tag="VD968_06425"
                     /inference="COORDINATES: protein motif:HMM:NF025059.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HYE14058.1"
                     /translation="MGDPHTEQFFAALEGALSGGRFVKLTLAKYRGPETDLRNLYVRP
                     VRMKGDELLSFLYRYRTRDVVKNYAAEGGVRLLRSLLGAQFLGGHLFTLSEDLQIDFN
                     RRRESRLVARPPSFKERPTPEHDRRKRRALSAEGSVYLRELGVTNERGEVLKGAGDKF
                     RQINKFVEVLGSLYAASPLAGEQELSVVDVGSGKGYLTFAAYDYFNNVLGVGARVEGV
                     EARAELVELCNRVARLAGFDRLGFREGFIQDFEMPPTDILIALHACDTATDDALFKGI
                     GAGASVIITAPCCHKEVRPQISPPEPLRAVLRHGILLEREAETLTDSMRALLLEHAGY
                     KVKVFEFVSTEHTRKNTMIAAVRREGAAGGEEALRQFRALKEFYGVGEQRLETLLCGP
                     S"
     gene            complement(7139..7363)
                     /locus_tag="VD968_06430"
     CDS             complement(7139..7363)
                     /locus_tag="VD968_06430"
                     /inference="COORDINATES: protein motif:HMM:NF015578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbtH family protein"
                     /protein_id="HYE14059.1"
                     /translation="MSRDEREDNTIYKVVVNHEEQYSIWPADRENPLGWSDAGKSGTK
                     EECLAYIKEVWTDMRPLSLRKKMEEMGSGG"
     gene            complement(7479..>8128)
                     /locus_tag="VD968_06435"
     CDS             complement(7479..>8128)
                     /locus_tag="VD968_06435"
                     /inference="COORDINATES: protein motif:HMM:TIGR00196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HYE14060.1"
                     /translation="TKSGGLAKSAGAKLGGPVAEAQAVCVGPGMIEAESVARFVRATL
                     EFCGEVPVVLDAGALACLEGGGELLHALGGRAVVTPNADELAEVFGEDKELIKREPLS
                     AALRAAQEFRAVVALKGRETFIVSPDGRAYVNRAGSGGLATSGSGDVLAGVIAGLIAR
                     GAEPLTAAAWGVHAHALAGEALERRVGRLGFLARELLPEIPRALSRLGAGKKSLD"
BASE COUNT         1362 a         2915 c         2537 g         1314 t
ORIGIN      
        1 cgagttcgcg ggcgcgcgcg tgccgctcgt cgaagagacg caggacgtga aagcgcactg
       61 accgggtaag actttaggag tagtcgcatg gctgacttga gcgtaaattt cgcgggcata
      121 cagtcgccga acccattctg gttagcctcg gcgccgccga cgaacatggg ctcgatgata
      181 gagcgcgcgt tcgacgctgg ctggggcggg gccgtctgga agactctggg cgagccgatt
      241 cgcaacgtct gctcgcgcct cgcctcgatt gacggcgcgg gacagaggat gatcggcctc
      301 aacaacatcg agctgatcac cgaccgccct ctcgaagtca acctgcgcga agtcagcgag
      361 gtgaagcgga agtaccctaa gcacgcgctc atcgtctccc tgatggtcga gtcgcggcgc
      421 gaggcgtggc acgagatcgt caagcgggtc gagggcgctg gcgccgacgg gctggagctt
      481 aacttcggct gcccgcacgg catgagcgag cgcggcatgg gctcggcaat ggggcaggtg
      541 ccggactaca cgtgcatggt gacggagtgg gtgaaggagg tcgcgaccgt ccccgtcatc
      601 gtcaagctca cgcccaacgt cactagcatc aacccgcccg cgcgcgccgc cgtgcgcggc
      661 ggcgccgacg ccctctcgct catcaacaca atcaactccg tgatgggcgt gaacctcgac
      721 acgctcgtcc cgcacccgaa cgtcgcgggc atggctgcgc acggaggcta ctgcggcccg
      781 gccgtcaagc ccatcgcctt gaacatggtc tcggagcttg cgcgcgaccc cgaggtgacg
      841 gtgcccatct ccggcatcgg cggcatctcg aactggcgcg acgccgccga gttcctcgcg
      901 ctcggcgcca cgaccgtcca ggtctgcacg gccgtcatgc attacggcta ccgcatagtc
      961 gaggacatga ttgacgggct gtcgaactac ctcgacgaga agggcttcgc gtcggcgcga
     1021 gacttcgtcg gcgcgagcgc cccgcgcgtg accgactggg gcaacctcga cctcaactac
     1081 aagacggtcg cgcgcataga ccacgcaaag tgcatacagt gcaacctctg ccacgtcgcc
     1141 tgcgaggacg gcgcgcacca gtgcatcccg ctcgtgcagt tgaacggcaa gcgctacccc
     1201 gtcgtggacg agcacgagtg cgtgggctgc aacctctgct acctggtctg ccccgtgccg
     1261 ggctgcatct cgatggttcg cctcgacgat ggctccagtc ccctcacctg gcgccagctc
     1321 accagcgcgc agccgcccac cacctccacg acagactgag ccctgcccgg agcgcgcagg
     1381 agagtcgaag atgcgaaagg taaccttcgg gggcgccaac agtctcgaca atttcatcgc
     1441 ccgcgaggac ggcgcggtgg actggcttct gtggggcgag gaggccgcct cctacatgaa
     1501 ggagtactgg cagaccattg acacggtcgt gatggggcgt aagacatacg aggtggcgct
     1561 gaagttcggt atgaagtcgt accccggcgt aaagaattac gtcttttcgc gcaccatgaa
     1621 agaaagcccg gacaggcgcg tgaaactcgt ccgcgaggac gccgccgagt tcgtcagcgg
     1681 cctgaagcgt cggaagggga aagacatctg cgtgatgggc gggggcgagc tcgcgcgctc
     1741 gctcttcgag gcggatttga ttgacgagat aggcttcaac atccaccctg ttctgctagg
     1801 cagaggggtt ccgcttttcc acgagatgag ccgccagata gatttagagc tgctcgaatg
     1861 caggcccttc aagaacggtt gtgtgctggt gacgtaccgc gtcaaacaca gagagccgtg
     1921 agcggcctgc ggctttgagc cgctgaaacc tttcggcccg gctggcctcg gcgcgaccgc
     1981 ccgaaatcca cgcgcaggta ttttttccct cacgtcgtat ccgaatttat gtagcccgcg
     2041 cgggccgtaa tccgaaaccg tggagccgcg cggacgagcg cgcgtactta attccacgcg
     2101 cgcgtccgca gtcaacggca cgccccgcaa acagggcctt tcgcccccgc cacgcccgtc
     2161 gggaatacac gttgcctttc tccgaagttg cgtcgcctcc tttgcgacga gagttttcaa
     2221 ccgaggagaa agttgatgag attcagactg cttttcgcag ccatcgccct ggcgctcgct
     2281 gccgcccccg ccctcgcgca gacgagccgc ggcaccgtca gcggcgtcgt cacggacccg
     2341 aacggcgccg tcgtcgccgg cgctaccgtc acgctcacga acctctcgac ggaagtcagc
     2401 cgcacgacca cctctaacga cgagggcttc taccgcttcg acgccgttga ccccggcaac
     2461 tattcgatca agttttccgc ccaggggttc agcgacctga ccaagacgaa catccccgtg
     2521 caggcgggcc tcgtcgcaga catcggcggg cagctcacgc tcgggcaggc cgagataacg
     2581 attgacgtga cggccgaggg cggcgcgctc ctacagacgg aggcgcccgt gcgcggcggc
     2641 aacatccccg agacgcagat aacggagctg cccatcgcgc tccgcaaccc cgtgtcgctc
     2701 gcgctcacgc tgcccggcat ctcgacgaac cggtacggcg cgggcgtggc gaccttctcc
     2761 gtcaacggcg cccgccagcg ctcgaacaac ttcctgctcg acggcacgga gaacaacgac
     2821 atctcggtcg caggccaagg cttccaggtg acgaacaccg acgccgtcaa ggaggtctcc
     2881 gtgcagacct ctaactacga cgccgagttc ggccgcgcgg gcggcgccgt cgtcaacgtc
     2941 atcacgaagt cgggtacgaa cgagttccac ggcacgctat cctacctcgg cgactcgacg
     3001 cgcgacgacg cgataacggc tcaagggtcg cgctcgcccg acgtgcaggc gcgcggccac
     3061 aacctgcccg gcacggagca ctggttctcc ggcacggtcg gcggccccgt aatactgccg
     3121 cgcctcggcg agggcgggcg cgtgttcggc tacgacggcc gcaaccgcac cttcttcttc
     3181 ctcggcctac aggacaggcg gcagggatcg accagctcga cctcggtgat cgcgccgacg
     3241 gccgcgggcc gagcgcgcct gcgctcgctc ttcccggccg gcgtgaaccc gcgtgttgac
     3301 acctacctcg cggtcacgaa cggcgtgaac ggcacggcca accccttcac gctcgacctc
     3361 gggctcgggc gcggcggcat agagttcgcc accgccagcc ccgtttacgc gcagacgctc
     3421 gccaacttcc aggcgcaggt tcgcatagac caccagatag gcccgaacga ccagttctcg
     3481 gcccgctacg tctcggactt ccaggtcttg ccagtcggcg gcgtgctgcc gggcagcttc
     3541 cccgacctga ttacgagcca ggcgaacaag taccagaact tcctgctcac cgagacgcac
     3601 gtcttctcgc cgaacctgac gaacgaggcg cggctctcct acaaccgcat tgacctctcg
     3661 ttcccgctcg acccgcagaa cccgctgggc cttacgctcc cctgcataca gataaccacg
     3721 ctttcgagct gcacgacggc cggcacgcag ctctcggtca accccgtatt cccgcagggc
     3781 cgcgtcgcca acaactacgt cgtgcaggac acgatgacgc tggtgcgcgg cgaccacacg
     3841 ttccgcttcg gcgccgacct gctgatgcag cgctcgcgcc agttcgcgcc catcatcgag
     3901 cgcggctcgc tcacctacac cgacagctcg gtgaacgtcg gcggcactaa cgtctcgttc
     3961 acgggcttcg ccaacttcgt tgacgacttc ggcggctccg gcaacgcgac gaaggacttc
     4021 ggcagcccgg cctactaccc agagctcttc cgccaggcct acttcttcca ggatcgctgg
     4081 cgcgcgaaca aggagctgac gctcacgctc ggaatccgct acgagaactt cggcacgccc
     4141 ttcaacaacc tccgcacgcc ggccttcacc gggctcttca acgttgaccc cgtcaccttc
     4201 gaggggccgt tcgacgaccc gaaccagata ccgggcgaca acaacaactt cgcgccgacg
     4261 gtcggcatag cctactcgcc gtcggccgac tcgggcctgc tcggcttcct cttcggcggc
     4321 gagcaccgct cggtcatacg cgccggctac cagataggct acgactcctt ctacaacaac
     4381 ctggcgtcga acgcggcgac cgcggcgccc aacctcgtcg cgacctcgac cacctcgacg
     4441 ccgagcgccg ccagcccgcg cgggctcgcg aacctctcgc agcagttccc gaccgcccgg
     4501 cgccccgtga cggctctgga ctcgcagggc aacctgcttg cgcccgacct cgtcaacccc
     4561 tactaccagc gctggtcaat cggccttcag cgtgagatgc ccgcgggcgt catcctcgac
     4621 atgtcctacg tcggctcgaa gggtacgagg ctctacatca cggaggactt gaacccggtc
     4681 gtcccggcgg cgctgcggca gttcccgcgc aaccccgacg gctcgctcat cagcgtacct
     4741 gcggcgcgcc tctcgacccg ctacgacccg ctccagggct cgcgcaacat ccgcacgaac
     4801 ggcggcgact cgaactacca ctcgggccag ctcatgctct cgcgccggtt cgccaacaac
     4861 ttctccgtga ccggctccta cacgtggtcg aagctcattg acaacggcag cgacaccttc
     4921 gcgcaggcgg gcgtcaactc gcaggcgttc accgcgctgc cttcgcgctt cggcggcctg
     4981 cgcgccgacc gcggcgtctc gctctacgac cgcacgcacc gcgccgccat cacctacgtc
     5041 tacgcattcc ccttcttccg cgagcagcgc ggcttcgccg gccacctgct cggcggctgg
     5101 gagatttccg gcgtcacgca gttcgagagc ggcgtgcccc tgaacatcct gaacggcacg
     5161 gacgccgacc tcatcggcgg caacctggat aggcccgttt acaaccccga cgggcagcgc
     5221 ggcgtgcgcg cgcgcatcgc cgacgccacc agccccagcc ccacgggcta cgtcaacccc
     5281 gacgtggtca tcggcacgac ctccgcgggc gccaatatct tccagccgat tgacccgctt
     5341 caggccgagt acatacaggc tggcagcgcc cgcttccccg tcggcaacct cggccgcaac
     5401 actctgcgga cgcccggcat caacaactgg gacatgaacg tgatgaagcg cacgcggctg
     5461 ggcgagacga cgagcctgga gctccgcacg gagttcttca acgtcttcaa ccacccgcag
     5521 tacggcacgc cgagcgtcag ctcgttcctc aacgtcggcc agaccggcgt cggcggaacc
     5581 atttcctcga cgctgccggg ccgcttcctc gacccgcgct tcggcgacgg cggcggccgc
     5641 gtcatccgct accaactgaa gttcatcttc tagcgccacg gcctttccgg gggcgctcgc
     5701 gggggcggga ggtcggaaaa cctcccgccc atttcttttc cccgtcaccc cctccccacg
     5761 ccccgccact tcgcattaac tgccgtcgtc tttccgagcc ttagtcctgg ccgttctggt
     5821 catgaggggc gtggccggtc ggcagaatga gcgctcgcgg ctcgtcccct tggcgccgca
     5881 ggccccggcg ctcccctgct aagacggccc gcagaggagc gtttcgagcc gctgctcgcc
     5941 gacgccgtag aactctttga gcgcccggaa ctgacgtagc gcttcctccc cgcccgccgc
     6001 gccctcgcgc ctgacggccg ctatcatcgt gttctttcgc gtgtgctcgg tcgagacgaa
     6061 ctcgaagact ttgaccttgt agccggcgtg ctcgagcagc agcgcccgca tcgagtccgt
     6121 caaggtctcc gcctcgcgct caagaagtat gccgtggcgc aggacggcgc gcagcggctc
     6181 gggcgggctg atttgcgggc gcacctcctt gtggcagcaa ggcgcggtga tgatgacgga
     6241 ggcgcccgcc ccaatgccct taaacagcgc gtcgtccgtt gccgtgtcgc atgcgtgcag
     6301 ggcgatgagg atgtcggtgg gcggcatctc gaaatcctgt atgaagcctt cgcggaagcc
     6361 gagccggtcg aagccggcga ggcgcgcgac tcggttgcag agctcgacca gctcggccct
     6421 cgcctcgacg ccctcgacgc gcgcgccgac gcccagcacg ttgttgaagt agtcgtaggc
     6481 cgcgaacgtc aggtagccct tacccgagcc cacgtccacg acgctaagct cctgctcgcc
     6541 cgcgagaggc gacgccgcgt agagcgagcc gagcacctcg acgaatttgt ttatctgccg
     6601 gaacttatcg cccgcgccct tcaagacctc gccacgctcg ttcgtcacgc cgagctcgcg
     6661 caggtaaacg ctcccctcgg ccgagagggc tcgccgcttc cggcggtcat gctcgggcgt
     6721 cgggcgctcc ttaaagctcg gcggccgggc gacgaggcgc gactcccgcc gcctgttgaa
     6781 gtcaatctgc aagtcctctg agagcgtgaa gaggtggccg ccgaggaact gcgcgccgag
     6841 caggctgcgc agcaggcgca cgcccccctc cgcggcatag ttcttgacca cgtccctcgt
     6901 gcggtagcgg tagaggaagg agagcagctc gtcgcccttc atgcggacgg ggcgcacgta
     6961 gaggttgcgc aaatccgtct cggggccgcg gtacttcgct agcgtgagct tgacgaaccg
     7021 gcccccggag agagcgcctt cgagggcggc gaagaactgc tcggtgtgcg ggtctcccat
     7081 ccgccccatt gtagaacaaa cgcgggcgcg ggtggggagg ggcgaggcgg cgggcgcgtc
     7141 agccgccgga gcccatctcc tccatcttct tgcggaggct tagagggcgc atgtccgtcc
     7201 agacctcctt gatgtaggcg aggcactcct ccttcgtccc cgacttgccc gcgtcgctcc
     7261 aaccgagcgg gttctcgcgg tcggccggcc agatggagta ttgctcctcg tggttgacga
     7321 ctaccttgta gatggtgttg tcttctctct cgtcgcggct catggttcga gtctccttgg
     7381 gggctgaggt cggaaagggc ctgcgaggtg cgtgaagaag cgggtcacgc gctgggtcgc
     7441 gtcgtcgggc cgggagaatt taaaccatcg ggggcggttt agtcgagact tttcttgccg
     7501 gctccgaggc gggacagggc gcgcggtatc tcgggcagaa gctcgcgcgc gaggaagcct
     7561 agccggccga cccttcgctc gagcgcctcg cccgcgaggg cgtgcgcgtg gacgccccac
     7621 gccgcggccg tgagcggctc ggccccgcgc gcaatgaggc cggcgatgac gcccgcgagc
     7681 acgtcgcccg agccggacgt ggcgagcccg ccgctgcctg cgcggttcac gtatgcgcgg
     7741 ccgtcgggcg agacgatgaa agtctcgcgc cctttgagcg cgacgaccgc gcggaactcc
     7801 tgggccgcac ggagcgccgc gctgagtggc tcccgcttta ttaattcctt gtcttcgccg
     7861 aagacttcgg caagctcgtc cgcgttcggc gtgacgacgg cgcggccgcc gagcgcgtgc
     7921 agcagctccc ctcctccctc gaggcacgcg agcgcgccgg cgtcgagcac gaccggcacc
     7981 tcgccgcaaa attcgagcgt cgccctgacg aagcgcgcga ccgactcggc ctcgatcatc
     8041 cccggcccga cgcagaccgc ctgcgcctcg gcgacgggcc cgcccagctt cgcgcccgca
     8101 gacttcgcca gcccgcccga cttcgtct
//
LOCUS       DASPKR010000235         2302 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_288304, whole genome shotgun sequence.
ACCESSION   DASPKR010000235 DASPKR010000000
VERSION     DASPKR010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2302)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288304"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..812)
                     /locus_tag="VD968_06440"
     CDS             complement(<1..812)
                     /locus_tag="VD968_06440"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14061.1"
                     /translation="MKGTPFKTDALAAALALLALLSTLPAVAAAWQDEPPQKTGAHAD
                     AEVERGRQLYLRGENARAVKTLGDAANRLKTDADAWHYYGLALNRAGKSKEAVKAFER
                     AAKLRGSAGDRAALSLALLLSGRRGEAELEARRALELDPELPDAHFVVGMTLFAAEKF
                     ERAIEHADEALRLRPDFGAAQYLKGQAVLYIYADESDRVALKYPLRPGAEPAQRAAAL
                     GAREREFAPLVARMREAAARMEEFVNSQPNHPDAPAWRELVGTLRVYGRERRP"
     gene            complement(827..1609)
                     /locus_tag="VD968_06445"
     CDS             complement(827..1609)
                     /locus_tag="VD968_06445"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HYE14062.1"
                     /translation="MNRSLKCMTLAVALLSLPVGALAQGVGAGRVAQGEDEKRFPLDL
                     EDGSESAGEWHERGEALEREGKREQARKAFAEAVKLHLIAYRRVTNASPRRPTPEWTA
                     EEKAGLRRAAARRLERASESARRYLLLGEPESELERENLEAIRAHAALLAETDEARAA
                     FFPFEVDEKARIIYKPEPGYTERARANGTGGRVMVRAVLMADGEVRHVLVMKGLPDGL
                     SERAVEAARSMRFEPARRAGRPVSQLITLEYSFQIQMRRFRY"
     gene            complement(1632..>2302)
                     /locus_tag="VD968_06450"
     CDS             complement(1632..>2302)
                     /locus_tag="VD968_06450"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HYE14063.1"
                     /translation="CAAAPAARAQAEQGSAKLREAVSRDKRDAHAWHDLAEALAREGD
                     SPGALRAYREAVKLYRKRLEGMRFVAPTKGREPAGQHRDEIVSGLRRAPEAVGRYLAL
                     ESRLSGFERSQLEAAAGQAAMLRETDASRSVFFGSELESKARIIYKPEPVFGEYGGTG
                     VVRVRAVLGSDGRVKHIFVIKALGGQTENAVAAARRVRFEPAVKDGRPVSQFILLEYN
                     FNIY"
BASE COUNT          310 a          834 c          786 g          372 t
ORIGIN      
        1 gggcgcctct cccgcccgta aacgcggagc gtgccgacca gctctcgcca cgcgggggcg
       61 tccgggtgat tgggctggga gttgacgaac tcctccatgc gcgcggccgc ctcgcgcatg
      121 cgcgcgacga gcggcgcgaa ctccctctcg cgcgccccga gcgcggcggc gcgctgagcg
      181 ggttcggcgc ccggtcgtaa ggggtatttc agcgcgaccc tgtcgctttc gtcggcgtag
      241 atgtaaagca cggcctggcc cttcagatac tgagccgcgc cgaagtcggg gcggagccgc
      301 agggcctcgt cggcgtgctc aatggcgcgc tcgaacttct cggcggcgaa gagcgtcatg
      361 ccgacgacga agtgcgcgtc cggcagctcg gggtctaatt cgagcgcgcg gcgggcctcg
      421 agctcggcct cgcccctcct gccggacagc agcagggcga gcgagagcgc cgcgcggtcg
      481 cccgccgagc cgcggagctt cgcggcccgc tcgaaagcct tgacggcctc cttcgacttg
      541 ccggcgcggt tgagcgcgag cccgtagtag tgccaggcgt ccgcgtccgt cttcaggcgg
      601 ttagccgcgt cgccgagcgt cttcacggcg cgcgcgttct cgccgcgcag gtagagctgg
      661 cgcccgcgct cgacttcggc gtcggcgtgc gctcccgtct tctgcggagg ctcatcctgc
      721 cacgccgcgg cgacggcggg gagggttgac agcagcgcca acagcgcgag cgccgccgcg
      781 agggcgtctg tcttaaacgg cgttcccttc atgttcttag accggatcag tagcggaagc
      841 ggcgcatctg tatctggaag ctgtactcca gcgtgatgag ctgcgagacg ggcctgcccg
      901 cccggcgcgc gggctcgaag cgcatcgagc gcgcggcctc gacggccctc tccgagaggc
      961 cgtcgggcag ccccttcatc acgagaacgt gcctgacctc gccgtcggcc atgagcacgg
     1021 cgcgcaccat gacgcgcccg ccggttccgt tcgcgcgcgc tctctccgtg tagcccggct
     1081 ccggcttgta aatgatgcgc gccttctcgt caacctcgaa ggggaagaag gccgcgcgcg
     1141 cctcgtccgt ctccgcgagc agcgcggcgt gcgcgcgtat ggcttcgagg ttctcgcgct
     1201 ctagctctga ctccggctcg cccaggagca agtacctgcg cgcgctctcg gaggcgcgct
     1261 cgaggcgccg cgccgcggcc ctgcgcaggc ccgccttctc ctcggccgtc cactccggcg
     1321 tgggcctgcg cggggaggcg ttggtcacgc ggcggtaggc gatgaggtgc agcttgacgg
     1381 cctcggcgaa agccttgcgc gcctgctcgc gcttcccctc acgctcaagg gcctcgccgc
     1441 gctcgtgcca ctcgccggcc gactcggagc cgtcttcgag gtcgagcggg aaccgcttct
     1501 cgtcctcgcc ctgggcgacg cgccccgcac ccacgccctg cgcgagcgct ccgaccggga
     1561 gtgagaggag cgcgaccgcg agcgtcatgc atttaagaga tctgttcata cggctcacct
     1621 ccgcgcaccg atcagtagat gttgaagttg tactcaagca ggatgaactg cgagacgggg
     1681 cggccgtctt tgaccgccgg ctcgaatctc acacgccttg cggcggctac ggcattctcc
     1741 gtctggccgc ccagagcctt gataacgaag atgtgcttta cccttccgtc agagcccagc
     1801 acggcgcgca ccctgaccac gcccgtgcca ccatactcac cgaacaccgg ctccggcttg
     1861 taaatgatgc gcgccttgct ctccaactcc gaaccgaaaa agacggagcg gctcgcgtcg
     1921 gtctcgcgga gcatggctgc ctggcccgcg gccgcttcga gctgcgagcg ctcgaagccc
     1981 gacaggcggc tttcgagcgc gagatagcgc ccgactgcct cgggggcgcg acgtagcccg
     2041 cttactatct cgtccctatg ctgcccggcg ggctccctcc cctttgtcgg agcaacgaag
     2101 cgcatacctt cgaggcgctt cctatagagc ttgacggcct cgcggtatgc cctgagcgcg
     2161 cccggggagt cgccctcgcg cgcgagcgcc tcggccaagt cgtgccaagc gtgggcgtcg
     2221 cgcttgtcgc gcgagacggc ctcgcgcagc ttcgccgagc cctgctccgc ttgggcgcgg
     2281 gccgcgggcg cggcggcgca ga
//
LOCUS       DASPKR010000236         3331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1710490, whole genome shotgun sequence.
ACCESSION   DASPKR010000236 DASPKR010000000
VERSION     DASPKR010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3331)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3331
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1710490"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1725
                     /locus_tag="VD968_06455"
     CDS             <1..1725
                     /locus_tag="VD968_06455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14064.1"
                     /translation="ELRQNVPAGGSVVLRLRLTDGEPIDPLADVDRVVEERRREADEF
                     YAALHPPGATEDERRVQRQALAGMLWTKQIYIYDVHLWLDGDNPDWPPPDSRRRLRNH
                     RWLHLNSMRVMSMPDKWEYPWFAAWDLAFHCVPLALVDPEFAKEQLWLLLFEQFQHPN
                     GQLPAYEWEFSDLNPPVHAWAVWRVYNMDRLRSGKADRLFLEKCFHKLLINFAWWVNK
                     VDSQGNNVFEGGFLGLDNITVLDRSQPLHFGARLEQSDATGWMGMFCLNLMRIALELA
                     KENKAYEGLATKFFQHYVYVGAAMKHMGESDHDLWDEGDEFFYDVLRQPDGSFHKFRV
                     RSLVGLIPLYAVERLEEDWIEPFPEFRANLHWFLENRQDIVRRCVTTLEHGGKRVHVL
                     AIVNPEQMRALLKRVWDSEEFRSDYGLRSLSKWHERNPFRFGDAEVGYEPAESREMLK
                     GGNSNWRGPVWFPTSFMMIESLRKLGKAYGPLFSVPGKTAGEPSVTLQEMARGFADRL
                     VALFTRDDGGRRPAHGLYSKFQSDPHWRDLLLFYEYFNGDTGMGLGASHQTGWTGLVA
                     SLIDEWRR"
     gene            1889..2365
                     /locus_tag="VD968_06460"
     CDS             1889..2365
                     /locus_tag="VD968_06460"
                     /inference="COORDINATES: protein motif:HMM:TIGR00738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HYE14065.1"
                     /translation="MKVSAQEEYGLRCLLQLARLGDGEALTLGQVAELEGISQANAGK
                     VLWLLNKAGLVSSTRGTKGGYALARPATEIRLSEIIKVLDAGEVDGHCKTYPGVLDAC
                     VHTSDCGIRSVLINVHEVVERALSGITLAQLAAGEQPPAAATLHQIHGLRPPAGAR"
     gene            2391..>3331
                     /gene="sufB"
                     /locus_tag="VD968_06465"
     CDS             2391..>3331
                     /gene="sufB"
                     /locus_tag="VD968_06465"
                     /inference="COORDINATES: protein motif:HMM:TIGR01980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HYE14066.1"
                     /translation="MSSIELLTNKEYKYGFVTDIESDVIPRGLTEETIRLISEKKSEP
                     DWMLEFRLKAFRQWLKMKEPKHWPNVKYPEIDYQDIIYYSAPKQKVTKKSLDEVDPEL
                     LRTFEKLGIPLSEQKQLAGVAVDAVFDSVSVATTYKEKLKKHGVVFCSFTEAIRDYPE
                     LVKKYLGSVVPVGDNYFAALNSAVFSDGSFVFVPKGVRCPMELSTYFRINNQDSGQFE
                     RTLVVAEEGAYVSYLEGCTAPKFDKNQLHAAVVELVALDDAEIKYSTVQNWYAGDEEG
                     RGGIYNFVTKRGACRGRNSKISWTQVETGSAITWKYPS"
BASE COUNT          637 a         1081 c         1050 g          563 t
ORIGIN      
        1 gagttgaggc agaacgtccc ggccggcggc tccgtcgtcc tccgcctgcg cctgaccgac
       61 ggcgagccta tagaccctct ggccgacgtt gaccgcgtcg tcgaagagcg ccggcgcgag
      121 gccgacgagt tctacgcggc actgcacccg cccggcgcca cggaggacga gcggcgcgtg
      181 cagcggcagg cgctggccgg gatgctctgg acgaagcaga tttacatcta cgacgtgcac
      241 ctctggctcg acggcgacaa ccccgactgg ccgccccccg actcgcgccg ccgcttacgc
      301 aaccaccgct ggctccacct caactcgatg cgcgtgatgt cgatgccgga caagtgggag
      361 tacccgtggt tcgccgcctg ggacctggcc ttccactgcg tgccgctcgc gctagttgac
      421 ccggagttcg ccaaagagca actgtggctc ctgctcttcg agcagttcca gcacccgaac
      481 ggccaactcc ccgcctacga gtgggagttc tcagacctca acccgccagt ccacgcctgg
      541 gccgtctggc gcgtctataa catggatcgc ctccggtcgg ggaaggccga ccggctgttc
      601 ctggagaagt gcttccacaa gctcctcatc aacttcgcct ggtgggtgaa caaggttgac
      661 agccagggca acaacgtctt cgagggtggc ttcctcggcc tcgacaacat aacggtgctc
      721 gaccgcagcc agccgctaca cttcggcgcg cggctcgaac agtcggacgc gacgggctgg
      781 atgggcatgt tctgcctcaa cctcatgcgc atagcgctgg agcttgcgaa ggagaacaag
      841 gcttacgagg ggctcgctac gaagttcttc cagcactacg tctatgtcgg cgccgcgatg
      901 aagcacatgg gcgagagcga ccacgacctc tgggacgagg gcgacgagtt tttctacgac
      961 gtgctgcgcc agcccgacgg ctcgttccac aagttccgcg ttcgctcgct cgtcggcctc
     1021 ataccgctct acgccgtcga gcgtctcgag gaggactgga tcgagccctt cccggagttc
     1081 cgcgcaaacc tccactggtt tttagagaac cgacaggaca tcgtccgccg ctgcgtcacg
     1141 accctagagc acggcggcaa gcgcgtccac gtcctcgcaa tcgtcaaccc ggagcagatg
     1201 cgcgcgcttt taaagcgggt ctgggactcg gaggagttcc gctccgacta cggcctgcgc
     1261 agcctctcga agtggcacga gcggaacccc ttccgcttcg gcgacgcaga ggtcggctac
     1321 gagccggccg agtcgcgcga gatgctaaag ggagggaact cgaactggcg cggccccgtc
     1381 tggttcccga cctcgtttat gatgatagag tcgctgcgga agctcgggaa ggcatacggc
     1441 ccgctctttt ccgtccccgg caaaacagcg ggcgagccgt ccgtcacgct tcaggagatg
     1501 gcgcgcggct tcgccgaccg cctcgtcgcg ctcttcaccc gcgacgatgg ggggcgccgc
     1561 ccagcacacg gcttgtactc gaaattccag agcgacccgc actggcgcga cctgctgctc
     1621 ttctacgaat acttcaacgg cgacaccggc atgggcctcg gcgcctcgca ccagaccggc
     1681 tggacgggcc tcgtcgcctc cctcatagac gagtggcgga ggtgactgcc gggagccctg
     1741 ccccgccgga ctaaagcgaa ctttctcaac agcttagcgg tacaacctcg cgcccggccg
     1801 gggcgtctaa ccaatcttga caaaaaagtc aggtatgtct agtatggatc agcaataacg
     1861 ttccggcgac caatttttcg ggtgttttat gaaggtctcg gcacaagaag agtacggtct
     1921 gcgctgcctt ttgcagcttg cgcgcctggg cgatggcgag gcgctaacgc tcgggcaggt
     1981 cgccgagctc gagggcatct cgcaggccaa cgccggcaag gtcttgtggc ttttgaacaa
     2041 ggcgggcctg gtcagctcga cacgcgggac gaagggcggc tacgcgctgg cgcggccggc
     2101 tacggagatt agactgagcg agatcatcaa ggtgctagac gcgggcgagg ttgacgggca
     2161 ttgcaagacg taccccggcg tgctcgacgc gtgcgtccac acgagcgact gcggcatacg
     2221 ctccgtgctc ataaacgtcc acgaggtggt cgagcgtgcg ctctcaggca tcacgctcgc
     2281 gcagctcgcc gcgggcgagc agccgccggc cgccgcgacg ctgcaccaga tacacggcct
     2341 gcggccgccc gccggggcga ggtgaagggt ttcaaggaag ctaggaaata atgagcagca
     2401 tagaacttct taccaacaaa gagtacaagt acggcttcgt caccgacatc gagtcggacg
     2461 tgataccgag ggggctgacg gaagagacca tacggctcat ctcggagaag aagtcggagc
     2521 ccgactggat gctcgagttc cgcctgaagg ccttccgcca gtggctcaag atgaaggagc
     2581 ctaagcactg gccgaacgtc aagtacccgg agattgacta ccaggacatc atctactaca
     2641 gcgcgccgaa gcagaaggtg accaagaaga gcctcgacga ggttgacccc gagctcctgc
     2701 gcaccttcga gaagctcggc atccccctga gcgagcagaa gcagctcgcg ggcgttgccg
     2761 ttgacgcggt cttcgactcc gtctcggtcg cgacgaccta caaggagaag ctcaagaagc
     2821 acggcgtcgt cttctgctcg ttcaccgagg cgatacgcga ctaccccgag ctcgtcaaga
     2881 agtacctcgg ctcggtcgtc cccgtcggcg acaactactt cgcggctctc aacagcgcgg
     2941 tcttctccga cggctcgttc gtcttcgtgc cgaagggcgt gcgctgcccg atggagcttt
     3001 cgacctactt ccgcatcaat aaccaggact cgggccagtt cgagcgcacg ctcgtcgtgg
     3061 ccgaggaggg cgcctacgtc tcctacttag aaggctgcac ggcgccgaag ttcgacaaga
     3121 accaactgca cgcggcggtg gtcgagctgg tcgcgctgga cgacgcggag attaagtact
     3181 cgacggtgca gaactggtac gcgggcgacg aggaggggcg cggcggcatt tacaacttcg
     3241 tcaccaagcg cggcgcctgc cgcgggcgca actcgaagat ttcgtggacg caggtcgaga
     3301 ccggctcggc gatcacgtgg aagtaccctt c
//
LOCUS       DASPKR010000237        14566 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1710553, whole genome shotgun sequence.
ACCESSION   DASPKR010000237 DASPKR010000000
VERSION     DASPKR010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 14566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14566)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14566
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1710553"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VD968_06470"
     CDS             <1..326
                     /locus_tag="VD968_06470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000369668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HYE14067.1"
                     /translation="FVAGMEIANGFSELNDPAEQLERFEEQARQRERGDDEAMQTDED
                     YVRALSYGMPPAAGIGIGIDRLTMLLTNKRSIRDVILFPHMRPRRQAGEAEGAEDDGG
                     ALSNS"
     gene            complement(316..1800)
                     /locus_tag="VD968_06475"
     CDS             complement(316..1800)
                     /locus_tag="VD968_06475"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14068.1"
                     /translation="MRGQLNASASPLRRAALTLASSALALAAWAPSALAQDAAAKEGS
                     GDVLVRERRASKEGAKAEAAASAETPADDEAGLEELRARAGAEKNAQERGRLQRALVE
                     RLTAAGRKAEAVSLLRGMLAEDRFDPPFFYNTGNALARLGESEAAVEAYRKAVAQRRG
                     NYARAQHNLGVVLARLGRWEESEAALTAALKLENYTYAEASYSLGRLHALRGEAGQAI
                     AEWERTLRLDPSHSAAAVARARALAEDGDPEAALEVLGAFASRASRSGGGVPREVAVA
                     RGEILAAAHVADSARESAKDGGAAAEAKAIRANADGRDPLTLIREARPGSLRPLTVDR
                     ETYELLKRARAARAKERDDEAAALYGRAIESGGGYFLPANVELSYTLAALKRREEAVE
                     GLLTVVRREGGRYPIAFYHLGRYYELLGKFEESAESFARAAQLLGGESPQFYIDLSRV
                     REKEGKLAEALAAAEAYVRAMERNGAAPEWAHGLVSRLREKVRN"
     gene            complement(1834..2526)
                     /locus_tag="VD968_06480"
     CDS             complement(1834..2526)
                     /locus_tag="VD968_06480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14069.1"
                     /translation="MKTKIMLYATLAVLALAAAAPSVSAQSGAVRARTEGGREVILYP
                     DGTWKYASDVRPPAPAGGGISVVAPVVKADPSKTLFKTERGSFGIRYDPSKWQPARRP
                     AGGEPGQQSFNLVRGDGYAVMITEELPIPTNTLRNIALENARAAAPDARIVFEERRTV
                     NGREVLCMKIEGTIQQIPFIYYGYYYGGKAGTIQMLTYTGQSLFAKYEADFTEFLNGL
                     EIYEQETPPAKP"
     gene            complement(2532..3629)
                     /locus_tag="VD968_06485"
     CDS             complement(2532..3629)
                     /locus_tag="VD968_06485"
                     /inference="COORDINATES: protein motif:HMM:NF026220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HYE14070.1"
                     /translation="MKRSEFEIFNLILNKAVARRLLPSAFCLLLSAFFLAPAAHAGAW
                     AKQKSGTMAWLHAVFFVDARRGWAAGGKGVLLKTSDGGERWEAAPAPTTDALRDIFFT
                     DERTGWLVCDRGIYSLKVGEESRSYLMKTSDGGATWSRVDVTGADAEARLVGVRFADA
                     RRGWAFGELGALYMTGDGGATWARQRVPTKRLLLGAAFHDAARGWLVGAGATLLHTED
                     GGENWREGLALGLDAQPRERLRTVSQAPTHDGRARPPLRFNAVSFAGARRGWAVGAGG
                     AVFATDDGGRTWRAQNSNVEADLFDVKFLDEREGWAVGASGTILRTADGGATWAQEPA
                     RTPHTLERLFFTDARRGWAVGFGGTIVAFKG"
     gene            complement(3659..4495)
                     /locus_tag="VD968_06490"
     CDS             complement(3659..4495)
                     /locus_tag="VD968_06490"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HYE14071.1"
                     /translation="MKLNLRPAAAALALLLLAAAPHAAPAQNKQKKEGDAQQPTAQKT
                     GAGERLEADDTSAQRPGVPEGALANRRERMSEEEDAEIPYYNNFLAKYLLGPEDVISI
                     SVFGLDRYSKTGIVIPPDGRIDYYHIREGVHVAGKTTRQVADEIAAHLEEYIIEPKVT
                     VSLEKAMSSRYGVIGDVGKPGVFVMTRRLSVYEALAESGGVLSTGDKKRVVVLHWNAD
                     RTLRQIPIDVAAIEKGKAPDNYFLSPGDQIVVPGNRFKTVQKVLGLLPVISFARIFTG
                     GF"
     gene            complement(4540..5928)
                     /locus_tag="VD968_06495"
     CDS             complement(4540..5928)
                     /locus_tag="VD968_06495"
                     /inference="COORDINATES: protein motif:HMM:TIGR03013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03013 family XrtA/PEP-CTERM system
                     glycosyltransferase"
                     /protein_id="HYE14072.1"
                     /translation="MASRRVNVRTLLLIVAEALLVFWAMVAAAYLRLGWSDAFYEFND
                     GYGLYKAAVVTALCLAAFYLYDLYDFVVMHDRRELVLRLVQALGLAWVALAIVIFLVP
                     PLRFGRGVSLYALPLALALTVGWRVGIHWLLGHPSVGEKILIVGSGDSAVEIAREVVG
                     RRDAGYRVVGFVDNRPDLVGQSLFNPRVLGTSDEMGEIVRREGVNRIVVAMGERRGQF
                     PVQQLLDLSLSGNVAIEECASFYERLTGRVSLDMLRPSWLIFSGRGRQARLGATARAL
                     MHRGIALVGGVLSLPIALVTAVLIKIESPGPVLYKQERVGKNGRVFTIMKFRSMRADA
                     EKDGPVWASKEGDDRATRVGRVIRKIRVDEIPQFWNILKGDMNFVGPRPERPHFVKQL
                     AEEIPFYEQRHLIPPGLTGWAQIKYPYGASIEDARQKLQYDLYYIKNQSLLLDAVIMF
                     ETIKTIVFGRGA"
     gene            complement(5950..6720)
                     /locus_tag="VD968_06500"
     CDS             complement(5950..6720)
                     /locus_tag="VD968_06500"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004713 - protein tyrosine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0004715 - non-membrane spanning protein
                     tyrosine kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CpsD/CapB family tyrosine-protein kinase"
                     /protein_id="HYE14073.1"
                     /translation="MGAAGSTRTPEFVSVDISAARVEPHLVAITEPRSAHAERYRSLR
                     TRVLHAGERKKMQAFVVTSAGVMEGKTLTALNLSWLLAQTDGVRALLIDGDLRNPCAA
                     HYLGLDAPEGLSEVLAGEVSLAESILRLEPAGLHLLPGGSARDDVAEMLSGPKFMAVL
                     AEARKLFDYIIIDAPPLAVFTDATLLINRADSALIVARAGRTRFSALDRVLAPVQRER
                     LLGVVLNGSDEQLAEANYYYRRYTARREGGARAGGDEK"
     gene            complement(7003..8094)
                     /locus_tag="VD968_06505"
     CDS             complement(7003..8094)
                     /locus_tag="VD968_06505"
                     /inference="COORDINATES: protein motif:HMM:NF024793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYE14074.1"
                     /translation="MYLEFYGLKELPFALTPDPRFIYFTPSHTEAMANLHYGIESGKG
                     LIVVTGEVGTGKTTILRWMMQRLDRTVLVAYIFNPRMTVAEFYQYVSSPKLLDVPRWE
                     SKSELLLKLGEVLDSRHSRGLRTVLIIDEAHGLSPAVLEEIRLLSNFESDSAKQLQIV
                     LTGQPELRDVLNQPELRQLKQRVALRCEVRPLPDIEETDRYITSRLLAAGAERTDIFT
                     PAAVDYIFRCSDGIPRQINNVCDNALLAGFAAGAEIISRDIIEEVADTFDMLPGGARG
                     RQTGEERERAARIFDASGRAELWAAGAGLPDSEHGGRPPGVAGASRAREELDMEQEFS
                     VRGGEEGAPAADELGRAFDRWGGAGRGDS"
     gene            complement(8099..9724)
                     /locus_tag="VD968_06510"
     CDS             complement(8099..9724)
                     /locus_tag="VD968_06510"
                     /inference="COORDINATES: protein motif:HMM:NF014732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNVR domain-containing protein"
                     /protein_id="HYE14075.1"
                     /translation="MSAEFRQRKPSEYAQIFWRRKWLIVLPTAAVALAVGWVVWRLPN
                     VYESTTLLTVRPASISSAVFTQLSDKDLSARINNISQEVNSRSALEPLIERYNLYAAE
                     RRRGEAMDTLVERMRTKDITIKINTTRDEVTNGFYLSFRTSDPRDAQNVTAELARKYV
                     DAQAKAAGEEATLTKEFFEEKLRQEKERLDEIDKRRLDFMRANVSNLPTQAEAMIGQL
                     AGMREQQKTLMMEIGRLNDQRASDAKFLADLSKAREQDIIEVAEKIEDPKSTLGYAEL
                     VKRKAQLESERQNLLTTFKPKHPDVISVQNQIDSIQRQMDEMVEEGKRKIDEKRKRLE
                     EKVDPRLNSYKSSIARLDGEIQRQKTLLAQTEAAISQLERRINLVPGSEVGLEAINRD
                     YQSQKAVYESTLEQQKKAEIGAEIANRAQGENIAVLDPASLPERPVAPNRPMLLVLGL
                     LAGLGCGLALAAAFEVPRMLTIQTAEDAEHYTGLPVLVTMPVLLTPREQRNLKLRRAA
                     LAVAGLAFAVMSVPALAFLLRATRLIEMFASRG"
     gene            complement(9810..12209)
                     /locus_tag="VD968_06515"
     CDS             complement(9810..12209)
                     /locus_tag="VD968_06515"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14076.1"
                     /translation="MLLALLALCAALAAGCSNPEKAKAEHVARGEALLKERRWQEATI
                     EFRNAIQIDDSLAQAHWGLARAYEELGRAPEAFEEWQKTARLDPNNVPVRIKLAKGYI
                     AAYGQQKNQDFLAEAERYIGEVLAREANNPDGYILQANVLFYRGDPKQAEEKINHAIS
                     LDPQRIESHMGLAQFYLMTNRTADAEAVFKKAISINDRSSLAHGQYAIFLVQTGRSAQ
                     AEAEFRRAVEVDPENRDARKVLASFYLVNNRMQEAEAAYKEWAQLDWDKPEGRARLAD
                     YYATVGRYDEAAALYREIVGSAPDFARGRYRLGEISLQRGDKEAAREQVAELLKRNER
                     DADARLLRARMSMADGKARDAIADLKPILDLEPRSQLGLYFMAEALYRDGQLEQARAR
                     VGELERYYPDFLPARLLQIQINFDTGDAEGAKRMADELLKRVAEAELKPDANRTPQLA
                     ADVRTNALLLRGMASLRLGQTAAARADMEAARAVSPGSPMPHINLADVALAEGKYEEA
                     RQHAERALSIDRANLPAFTKLLTIAVADRRLPEVRGRLEQLAREMPQSAPVHYLLGNS
                     YRVGYGGEGGVPADAARAEAAMRRAVEIDPDYIAAYSALGEIYFTAQPSDPDRAIAEY
                     RKITERRDDYVDAYLKIGLIESGRKNLDAAEQYYRRVLSIRPDEPIAANNLASMYADH
                     GRGNADEAMRLAQDIVRRYPNNPGFADTLGWVYYRKGLHRDAVEQLQRAVSISSKMRG
                     DNSLYRWHLGAALAAKGDKAAARRELQKALELAAQEQQRGAHRPTQTPVEDVRRTLES
                     L"
     gene            complement(12566..13219)
                     /locus_tag="VD968_06520"
     CDS             complement(12566..13219)
                     /locus_tag="VD968_06520"
                     /inference="COORDINATES: protein motif:HMM:NF023410.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EpsI family protein"
                     /protein_id="HYE14077.1"
                     /translation="MKTKGKQFWALVVVLVAAGAFINYLGVAGEARVARRALAEFPRE
                     LGGGWQQRGADTRFDAATEAVLRADDYVSRDYRSADGRSASLYVGYYSTQRTGATYHS
                     PLNCLPGTGWTLSDPAAVEIKPAGGAPAFEANRYLIENKGDRHLLVYWYQGRGRAVAS
                     EYWDKAYTVIDSVRLRRSDGAMVRVLVPVGASEEQALKTAAEFAAQVAPNLPAYVPE"
     gene            complement(13220..14254)
                     /gene="xrt"
                     /locus_tag="VD968_06525"
     CDS             complement(13220..14254)
                     /gene="xrt"
                     /locus_tag="VD968_06525"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: protein motif:HMM:NF021254.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0043687 - post-translational protein
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosortase"
                     /protein_id="HYE14078.1"
                     /translation="MQNLTASRLYKPLILAGAVAFLYWGVLARLARFWWEDENYSHGL
                     LIPLVIGYILWTERGRLSRIEPRPALLWGGVGIGAALLALWAGTAGAELFLQRTSLVL
                     LLAGVALYFWGWRMLRAVAVPLLLLLLAVPIPAIIFNKIAFPLQLFASRCAVWAMRQF
                     DITVLREGNVIELLPLGATVTKKLEVVEACSGIRSLMTLVTLAVVFAYFTHPSDDEAD
                     GGGGRAGRRYAFVRSALIVLAAVPIAIITNAARVSGTGVLAHFYGTEVADGFFHTFSG
                     WVVYIAAFALLIAFGWLLDRFNPAGRGPRGGGPARKAAQGAEQAGEAGAPAVGGAPAP
                     TAALGRTELN"
BASE COUNT         2078 a         4961 c         5126 g         2401 t
ORIGIN      
        1 tgttcgtggc ggggatggag attgcgaacg ggttctcgga gttgaacgac ccggcggagc
       61 agttggagag gtttgaggag caggcgcggc agcgcgagcg gggcgacgac gaggctatgc
      121 agaccgacga ggattacgtg cgggcgctct cctacgggat gccgccggcc gcaggcatcg
      181 gcatcggcat tgaccgcctg acgatgcttc tgacgaacaa gcgctcgata cgcgacgtga
      241 ttctcttccc gcacatgcgc ccgcgcaggc aggcgggcga ggcggagggg gccgaagacg
      301 acggcggcgc gctctctaat tcctgacctt ctcgcggagg cgcgagacca gcccgtgagc
      361 ccattcgggc gcggcgccgt tgcgctccat cgcccgcacg taggcttcgg ccgccgcgag
      421 cgcctcggct agcttccctt ccttctcgcg cacgcggctc aggtctatgt agaactgcgg
      481 gctctcgccg cccaaaagct gcgcggcgcg cgcgaacgac tcagccgact cctcaaactt
      541 cccgagcagt tcgtaataac gcccgaggtg gtagaaggct atcgggtagc ggccgccctc
      601 gcgcctgacg acggtgagca gcccctcgac cgcctcctcg cgcctcttca aagccgcgag
      661 cgtgtagctc agctcgacgt tcgcgggcag gaagtagccg ccgccgctct caatcgcgcg
      721 gccgtagagc gccgccgcct cgtcgtcgcg ctctttggcc cgcgccgcgc gcgcgcgctt
      781 cagcagctcg taagtctccc tgtcaaccgt gagcggccgg aggctccccg gcctcgcctc
      841 gcgtatgagc gtgagcgggt cgcgcccgtc ggcgttcgcc ctgattgcct tcgcctcggc
      901 cgccgcgccg ccgtctttcg ctgactcgcg tgcggagtcg gcgacgtgcg cggcggccag
      961 tatctcgccg cgcgcgacgg cgacttcgcg cgggacccca ccgccggagc gagaggcgcg
     1021 cgaggcgaac gcgccgagca cttcgagcgc ggcctcgggg tcgccgtcct cggcgagcgc
     1081 gcgggcgcgc gcgacggccg cggccgagtg cgaggggtcg agccggagcg tccgctccca
     1141 ctcggcgatg gcctggcccg cctcgccgcg cagcgcgtgc aggcggccga ggctgtagct
     1201 cgcctccgcg taggtgtagt tttcgagctt gagcgccgcc gtgagcgccg cttccgactc
     1261 ctcccagcgg ccgagccgcg cgagcacgac gccgaggttg tgctgcgcgc gcgcgtagtt
     1321 gccgcgccgc tgcgcgacgg ccttgcggta agcctctacg gccgcctccg actctccgag
     1381 ccgggccagg gcgttccccg tgttgtagaa gaagggcggg tcgaacctgt cttcggcgag
     1441 catcccgcgc agcagagaga ccgcctcggc ctttcggccc gccgcggtca gacgctcgac
     1501 gagcgcgcgc tgaagccgcc cgcgctcttg cgcgttcttc tccgcgcccg cgcgcgcgcg
     1561 cagctcttcg agccccgcct cgtcgtcagc gggcgtctct gccgaggccg ccgcctccgc
     1621 cttagcccct tccttcgacg cgcggcgctc gcgcactaac acgtcgcccg agccttcctt
     1681 cgcggccgca tcctgcgcga gcgccgacgg cgcccacgcc gcgagcgcca gcgccgacga
     1741 cgcgagagtc agcgccgcgc gacgcaaagg cgaggccgaa gcgttcagtt gtccgcgcat
     1801 cgaatttctc cgcggggaga cgcgcccggc ccttcagggc ttagcgggcg gcgtctcctg
     1861 ctcgtagatt tccaggccgt tgaggaactc ggtgaagtcg gcctcgtact tggcgaaaag
     1921 cgactggccc gtgtaggtca gcatctgtat cgtgccggcc ttcccgccgt agtagtagcc
     1981 gtagtagatg aagggtatct gctggatggt gccttctatc ttcatgcaga ggacttcgcg
     2041 cccgttcacc gtgcgccgct cctcgaagac tatgcgcgcg tccggcgcgg ccgccctcgc
     2101 gttctcgagc gcgatgttcc tcaaggtgtt ggtggggatg ggaagctctt cggtgatcat
     2161 cacggcatag ccgtcgccgc gcacaaggtt gaagctctgc tgcccgggct ccccgccagc
     2221 gggccggcgg gccggctgcc acttcgacgg gtcgtagcgg atgccgaagc tgccgcgctc
     2281 cgtcttaaaa agcgtcttcg acgggtcggc cttgacgacg ggcgcgacga ccgagatgcc
     2341 gccgccggcc ggggcgggcg gtcttacgtc ggaggcgtac ttccaggtgc cgtccgggta
     2401 gaggatgact tcgcgccccc cttcggtgcg cgcccgcacg gcccccgact gcgccgagac
     2461 gctcggggcc gctgcggcga gcgcaagcac cgcgagcgtt gcgtatagca tgattttcgt
     2521 cttcaaggct ttcatccttt gaatgcgacg atggtgccgc cgaagccgac ggcccagccg
     2581 cgccgcgcgt ctgtgaagaa gaggcgttcg agcgtgtgcg gcgtgcgcgc gggctcctgg
     2641 gcccatgtgg cgccgccgtc cgccgtccgc agaatcgtcc ccgaagcccc gacggcccag
     2701 ccctcccgct cgtcgaggaa cttaacatcg aagaggtcgg cctcgacgtt cgagttttga
     2761 gcgcgccacg tgcggccgcc gtcgtccgtc gcgaacaccg ccccgcccgc gcccaccgcc
     2821 cagccgcgcc gcgcccccgc gaacgagacg gcgttgaagc ggaggggcgg ccgcgcccga
     2881 ccgtcatgcg tgggggcctg cgagactgtg cgcagccgct cccggggctg tgcgtcgagg
     2941 ccgagcgcga ggccctcgcg ccagttctcg ccgccgtcct cggtgtgcaa gagcgtcgcg
     3001 cccgcgccga cgagccagcc cctcgcggcg tcgtggaagg ccgcgccgag cagcagtctc
     3061 ttggtcggca cgcgctgccg cgcccacgtc gccccgccgt cgcccgtcat gtatagcgcg
     3121 cccagctcgc cgaaggccca gccgcgacgg gcgtctgcga agcggacgcc gacgagccgc
     3181 gcctccgcgt cggcgcccgt cacgtccacg cgcgaccagg tcgcgccgcc gtccgaagtc
     3241 ttcatcagat aagagcgcga ctcctcgccg accttgagcg agtatatgcc gcggtcgcac
     3301 acgagccagc ccgtgcgctc gtccgtgaag aagatgtcgc gcagcgcgtc cgtcgtcggc
     3361 gcgggcgccg cctcccagcg ctcgccgccg tccgaggtct tcaggagcac gcccttcccg
     3421 cccgcggccc agccgcgacg ggcgtccacg aagaagaccg cgtgcagcca cgccatcgtc
     3481 cccgacttct gcttcgccca cgcgcccgca tgggccgctg gcgcgaggaa gaaggcagaa
     3541 agcagaaggc aaaaggcgga aggcagaagg cggcgggcga ccgccttatt caatatcaaa
     3601 ttgaagattt caaattccga acgcttcatc gcctgactgc cttccgcctt ctcccccttc
     3661 agaacccgcc ggtgaatatg cgcgcgaaac ttatgacggg caggaggccg agcaccttct
     3721 gcacggtctt gaagcggtta ccgggcacta caatctggtc gccggggctc aggaagtagt
     3781 tgtcgggcgc cttgcccttc tcgatggcgg ccacgtctat gggaatctgc ctgagggtgc
     3841 ggtctgcgtt ccagtggagg acgacgacgc gcttcttgtc gccggtcgag agcacgccgc
     3901 ccgactccgc gagcgcctca tagacgctca gccgcctcgt catcacgaag actccgggct
     3961 tgcccacgtc gcctatgacg ccgtagcgcg aggacatggc cttctccaga gagaccgtca
     4021 ccttcggctc gatgatgtac tcttcgaggt gcgcggctat ctcgtcggcc acctgccggg
     4081 tggtcttgcc ggcgacgtgg acgccctcgc gtatgtggta gtagtctatg cggccgtcgg
     4141 gcgggatgac gatgccggtc ttggagtagc ggtcgaggcc gaagacgctt atggagatga
     4201 cgtcctcggg gccgagcagg tacttggcga ggaagttgtt gtagtaggga atctcggcgt
     4261 cctcctcctc gctcatgcgc tcgcggcggt tggcgagcgc gccctcgggg acgccggggc
     4321 gctgggccga cgtgtcgtcc gcttcgagcc gctcgcccgc gcccgtcttc tgcgcggtcg
     4381 gctgttgagc gtcgccctcc ttcttctgct tattctgcgc gggcgccgcg tgcggcgcgg
     4441 cggcgagtaa caggagcgcg agggcggctg cggcgggcct tagattcaac ttcatcgctt
     4501 caaacctccg tggcaacttc gctgcgggcc gggcgcgcgt caggcgcccc ggccgaagac
     4561 gatggtcttt atcgtctcga acatgatgac ggcgtcgagc agaaggctct ggttctttat
     4621 gtagtagagg tcgtattgca gcttctggcg cgcgtcctcg atggaggcgc cgtaggggta
     4681 ctttatctgc gcccagcccg tgaggccggg cggtatcagg tggcgctgct cgtagaaggg
     4741 tatctcctcg gcgagctgct tgacgaagtg cggccgctcg gggcgcgggc cgacgaagtt
     4801 catgtcaccc ttcaggatgt tccagaactg cgggatctcg tccacgcgaa tcttgcgtat
     4861 gacgcggccg acgcgcgtgg cgcggtcgtc gccctccttg ctcgcccaca cggggccgtc
     4921 cttctcggcg tccgcccgca tcgagcggaa cttcattatc gtgaagacgc ggccgttctt
     4981 cccaacccgc tcctgcttgt agagcacggg gccgggcgac tcgatcttta tcagcacggc
     5041 cgtcacgagc gcgatgggga gcgaaaggac gccgccgacc agcgcgatgc cgcggtgcat
     5101 gagagcgcgc gcggtggcgc ccaggcgggc ctgccggccg cggcccgaga agatgagcca
     5161 ggagggcctg agcatgtcga gcgagacgcg gcccgtcagc cgctcgtaaa acgaggcgca
     5221 ctcttctatc gccacgttac ccgagaggct caggtctaag agctgctgca cggggaactg
     5281 gccgcgccgc tcgcccatgg cgacgacgat gcggttgacg ccctcgcgcc tgactatctc
     5341 gcccatctcg tcgctcgtcc ccaggacgcg cgggttgaac aggctctggc cgacgaggtc
     5401 ggggcggttg tcaacgaagc ccacgacgcg gtagccggcg tcgcggcgcc ccaccacctc
     5461 gcgcgcgatc tcgacggcgg agtcgcccga cccgactatc agaatcttct cgccgaccga
     5521 tgggtggccg agcagccagt ggatgccgac gcgccagccg accgtgagcg cgagcgcgag
     5581 cggcagcgcg tagaggctca cgccgcgccc gaacctgagc ggcggcacga ggaatatgac
     5641 gatggcgagg gccacccacg cgagccccag cgcctgaacg agccgcagca ccagctcgcg
     5701 ccggtcgtgc atgacgacga agtcgtatag gtcgtagagg tagaaggcgg cgaggcagag
     5761 cgcggtgacg acagccgcct tgtagaggcc gtagccgtcg ttgaactcgt agaaggcgtc
     5821 cgaccagccc aggcgcaggt acgcggcggc caccatcgcc cagaagacca gaagcgcctc
     5881 ggcgacgatc agcagcagcg tcctgacgtt tacccgcctg gaagccaagc cctccccttt
     5941 cccagcggcc tacttttcgt cgccgccagc gcgcgcgccg ccctcgcggc gtgccgtgta
     6001 gcgccggtag tagtaattgg cctcggcgag ctgctcgtcc gagccgttga ggactacgcc
     6061 gagcagccgc tcgcgctgca cgggcgcgag cacgcggtcg agcgccgaga agcgcgtcct
     6121 gcccgcgcgc gcgacgatga gcgccgagtc ggcgcggttg atcaggagcg tcgcgtccgt
     6181 gaagacggcg agcggcggcg cgtcaatgat gatgtagtcg aagagcttgc gcgcctcggc
     6241 gagcacggcc atgaacttcg gccccgagag catctcggca acgtcgtcgc gcgccgagcc
     6301 gccgggcaga aggtgcagcc ccgccggctc gagcctcagg atggactcag ctaggctcac
     6361 ctcgcccgcg aggacttccg acagcccctc cggcgcgtcg aggccgaggt agtgagcggc
     6421 gcaggggttg cgcaggtcgc cgtcaatgag gagcgcgcgc acgccgtcgg tctgcgcgag
     6481 cagccaggag aggttcaggg ccgtcaacgt cttgccctcc atgacgcccg cgctggtgac
     6541 gacgaaggcc tgcatcttct tccgctcgcc cgcgtgcagt acgcgggtgc gcaaggagcg
     6601 gtagcgctcg gcgtgcgcgg agcgcggctc cgttatggcg acgaggtgtg gttcgacgcg
     6661 cgcggcggag atgtcaacgc tgacaaactc cggcgtgcgc gtcgaaccgg cagcgcccaa
     6721 agttgcccca gcagcacgcg aagccgaagc ggcggggagt gccgacccgc cggccgtctc
     6781 ggtgtgccca gtgggcgctg atacgtgcgc cgctgccggc gcgttaaagc ttcgggaagg
     6841 ttcgaagagc cgctcgggcg cggcctcggc gtctgagccc gcggcggcag cgccgttcgg
     6901 ccggccgttc ggtttggcgc ccgccgcgcc cttcgccccg gccgcgccgt tcgcgccgtt
     6961 ctcgcgcgcg gcgcgcttca gtgcgtcata gactctgccc atttaggaat cccccctgcc
     7021 ggcgccgccc catcggtcga aggcgcggcc caactcgtcc gcggccggcg ctccctcttc
     7081 gccgccccgc acgctgaact cctgctccat gtcaagctcc tctcgcgcgc gcgaggcgcc
     7141 cgcgaccccc ggtggacggc cgccgtgctc cgagtcgggc agcccggcgc ccgcggccca
     7201 cagctcggcg cggcccgagg cgtcgaatat gcgggcggcc cgttcgcgct cctcgcccgt
     7261 ctgtcggccg cgcgcgccgc cgggcagcat gtcgaaggtg tccgcgacct cctcgatgat
     7321 gtcgcggctg attatctcgg cgcccgcggc gaagccggcg agcagcgcgt tgtcgcagac
     7381 gttgtttatc tggcgcggta tgccgtccga gcagcggaag atgtagtcca cggccgcggg
     7441 cgtgaatata tccgtgcgct ccgcgcccgc cgccagcagt cgcgacgtga tgtagcggtc
     7501 ggtctcctcg atgtcgggca gcggccgcac ctcgcagcgc agcgccacgc gctgcttgag
     7561 ctgccgaagc tccggctggt tcagaacgtc gcgcagctcg ggctggcccg ttagcacaat
     7621 ctgcaactgc ttggccgagt ccgactcgaa gttcgagagc agccgaatct cttcgagcac
     7681 ggcgggcgag agcccgtgcg cctcgtctat gatgagcacg gtgcgaaggc cccttgagtg
     7741 gcgggagtcg agcacctcgc cgagcttgag cagaagctcc gacttgctct cccagcgcgg
     7801 cacgtcgagg agcttcggcg aggagacgta ctggtagaac tccgcgacgg tcatgcgcgg
     7861 gttgaagatg taggcgacga gcaccgtgcg gtcgagccgc tgcatcatcc agcgcagtat
     7921 cgtcgtcttg cccgtgccga cctcgcccgt gacgacgatg aggcccttgc cgctctctat
     7981 cccgtagtgc aggttcgcca tcgcctcggt gtgcgagggc gtgaagtata tgaagcgcgg
     8041 gtcgggcgtg agcgcgaacg gcagctcctt caggccgtag aattctagat acacggcttc
     8101 accccctcga cgcgaacatc tcaatgagcc gcgtcgccct gagcaggaag gcgagcgccg
     8161 ggacgctcat gacggcgaag gcgaggccgg ctacggcgag ggcggcgcgc ctgagcttca
     8221 ggttgcgctg ctcgcgcggg gtgaggagca cgggcatggt gacgagcacg ggcaggcccg
     8281 tgtagtgctc ggcgtcctcg gccgtctgga tggtgagcat gcgcggcacc tcgaaggcgg
     8341 ccgcgagcgc cagcccgcag ccgaggcccg cgagcaggcc gaggacgagg agcatggggc
     8401 ggttcggcgc gaccgggcgc tccggcaaac tcgccgggtc gaggacggcg atgttctcgc
     8461 cctgcgcgcg gttggcgatc tcggccccta tctcggcctt cttctgctgc tcgagcgtgc
     8521 tctcgtaaac ggccttctgc gactggtagt cgcggttgat ggcttcgagg cccacctcgg
     8581 agccggggac gaggttgatg cggcgctcga gctgcgagat ggccgcctcg gtctgggcga
     8641 gcagcgtctt ctgccgctgt atctcgccgt cgaggcgcgc gatgctgctc ttgtaggagt
     8701 tcaggcgcgg gtcaaccttc tcttccagcc gcttgcgctt ctcatcaatc ttgcgcttgc
     8761 cctcctcgac catctcgtcc atctgccgct gtatcgagtc aatctggttc tggactgaga
     8821 tcacgtccgg gtgcttaggc ttgaaggtgg tgagcaggtt ctgccgctcc gactctagct
     8881 gcgccttgcg cttgaccagc tccgcgtagc cgagcgtgga cttcgggtct tcgatctttt
     8941 cggcgacctc gatgatgtcc tgctcgcgcg ccttggacag gtcggcgagg aacttggcgt
     9001 ccgaggcgcg ctggtcgttg aggcgcccta tctccatcat cagggtcttc tgctgctcgc
     9061 gcatcccggc gagctggccg atcatggcct cggcctgcgt cggcaggttc gagacgttcg
     9121 cgcgcatgaa gtcgagccgc cgcttgtcta tctcgtcgag gcgctccttc tcctggcgga
     9181 gcttctcctc gaagaactct ttggtgagcg tggcctcctc gcccgcggcc ttcgcctgcg
     9241 cgtcaacgta cttgcgcgcg agctcggccg tgacgttctg cgcgtcgcgc gggtctgagg
     9301 tgcggaacga gaggtagaag ccgttggtga cctcgtcgcg cgtggtgttt atcttgatgg
     9361 tgatgtcttt ggtgcgcatg cgctcgacga gcgtgtccat cgcctcgccg cggcgccgct
     9421 cggcggcata gaggttgtag cgctcgatga ggggctctaa ggccgagcgg ctgttgacct
     9481 cctggctgat gttgttgatg cgcgcgctca ggtctttgtc cgagagctgc gtgaagacgg
     9541 cgctcgagat gctcgccggc cgcacggtca ggagcgtcgt tgactcgtaa acgttcggca
     9601 gccgccagac cacccagccg acggcgagcg ccaccgccgc ggtcggcagc acgatgagcc
     9661 acttcctgcg ccagaaaatc tgcgcgtact cggacggctt ccgttgcctg aattcagcac
     9721 tcataacgca actccgttgc gagcgcggag ggcagggcgc ggagtgacgg gttcagtccc
     9781 ccactccgcg ctcctgcttc cgcgcttcct taaaggcttt ccagcgtgcg gcgcacgtcc
     9841 tcgacgggcg tctgggtcgg gcggtgcgcc ccgcgctgtt gctcctgcgc ggccagctcc
     9901 agcgccttct gaagctcgcg gcgggccgcc gccttgtcgc ccttcgcggc cagggccgcg
     9961 ccgaggtgcc agcggtagag cgagttgtcg ccgcgcatct tcgaggagat ggagacggcg
    10021 cgctgcaact gctcgacggc gtcgcggtgc aggcccttgc ggtaatagac ccagccgagg
    10081 gtgtcggcga agccggggtt gttcgggtag cggcgcacga tgtcctgcgc gaggcgcatg
    10141 gcctcgtcgg cgttgccgcg gccgtggtcg gcgtacatag aggcgaggtt gttcgcggct
    10201 ataggctcgt cggggcgtat ggagagtacg cggcggtagt actgctcggc ggcgtcgagg
    10261 ttcttgcggc ccgactcgat gaggcctatc ttcaggtagg cgtcaacgta gtcgtcgcgc
    10321 cgctccgtga tcttccggta ctcggcgatg gcgcggtcgg ggtccgacgg ctgcgcggtg
    10381 aagtagattt cgccgagcgc cgagtaggcg gcgatgtagt cggggtctat ctcgacggcg
    10441 cggcgcatgg cggcctccgc gcgcgcggcg tcggcgggga cgccgccctc gccgccgtag
    10501 cccacgcggt aggagttgcc gagcaggtag tgcacggggg cgctctgcgg catctcgcgc
    10561 gcgagctgct ccagccgccc gcgcacctcg ggcaggcggc ggtcggcgac ggcgatcgtc
    10621 aacagcttcg tgaacgccgg caggttggcg cggtcaatcg agagggcgcg ctcggcgtgc
    10681 tggcgggcct cctcgtactt accctcggcg agggccacgt cggcgaggtt gatgtgaggc
    10741 atcggcgagc cgggcgagac ggcgcgggcc gcctccatgt cggcgcgcgc ggcggccgtc
    10801 tggccgaggc gcagggaggc catgccgcgc agcagcagcg cgttcgtcct cacgtccgcc
    10861 gcgagctgcg gcgtgcggtt ggcgtcgggc tttagctccg cctcggcgac gcgcttcaaa
    10921 agctcgtcgg ccatgcgctt cgccccctcg gcgtcgcccg tgtcgaagtt tatctgtatc
    10981 tggaggaggc gcgccgggag gaagtccggg tagtagcgct cgagctcgcc gacgcgggcg
    11041 cgcgcctgct ccaactgccc gtcgcggtag agcgcctcgg ccatgaagta gaggccgagc
    11101 tgcgagcgcg gctcgaggtc gagtatgggc ttgaggtctg cgatggcgtc gcgggccttg
    11161 ccgtcggcca tgctcatgcg cgcgcggagg aggcgcgcgt cggcgtcgcg ctcgttgcgc
    11221 ttgagcagct cggcgacctg ctcgcgggcc gcctccttgt cgccgcgctg taggcttatc
    11281 tcgccgaggc ggtagcggcc gcgcgcgaag tcgggcgccg agccgactat ctcgcggtag
    11341 agcgcggcgg cctcgtcgta gcggccgacg gtggcgtagt agtcggcgag gcgcgctcgc
    11401 ccctccggct tgtcccagtc gagctgcgcc cactccttgt aggcggcctc ggcctcctgc
    11461 atgcggttgt tgacgaggta gaagctcgcg agcaccttgc gggcgtcgcg gttctccggg
    11521 tcaacctcga cggccctgcg gaactcggcc tcggcctggg cgctgcggcc cgtctgtacg
    11581 aggaagatcg cgtactgccc gtgcgccagc gacgagcggt cgttaatcga gatggccttt
    11641 ttgaagaccg cctcggcgtc ggccgtgcgg ttcgtcatca ggtagaactg ggccaggccc
    11701 atgtgggact cgatgcgctg cgggtcgagg ctgatggcgt ggttgatctt ctcctcggcc
    11761 tgcttggggt cgcccctgta gaagaggacg ttggcctgga ggatgtagcc gtcggggttg
    11821 tttgcctcgc gcgcgagcac ctcgcctatg tagcgctcgg cctcggcgag gaagtcctga
    11881 ttcttctgct ggccgtaggc ggcgatgtag cccttcgcta actttatgcg gacggggacg
    11941 ttgttggggt cgagccgcgc cgtcttctgc cactcctcga aggcctcggg cgcgcggccc
    12001 agctcttcgt aggcgcgcgc gaggccccag tgcgcctgcg ccagagagtc gtcaatctgg
    12061 atggcgttgc ggaactcgat ggtcgcctcc tgccagcggc gctccttgag cagcgcttcg
    12121 ccgcgggcga cgtgttcggc cttcgctttt tcggggttcg agcatccggc cgcgagcgcg
    12181 gcgcagaggg cgagaagggc cagcagcaac gcacgggttt tacccgaacg cgggcactct
    12241 tgaagattca tctgtacggc actccttccg aacggggcgg gcgcgctgtc cccctctctt
    12301 tctggcgacg cgcggccggg gctttggccg ttcgcgctcc gggaggcttt ttacgccctc
    12361 gcttgttgac aggcggcccc gtggcctcga agctccggcg gcgggcaaag ccgcccggag
    12421 tggcgcatgg gccgactcac atcctaacac gaagccgccc gcccccggcg attaaaaagc
    12481 tttcgcggcg ggcgccagcc cgaccggggt ggcaacgcta aataaactct taatctcccc
    12541 tcttttcccg aaccgagggg cctggctact ccggcacgta ggccgggagg tttggcgcga
    12601 cctgcgcggc gaactcggcg gcggtcttca gcgcctgctc ttccgaggcg ccgacgggga
    12661 cgagcacgcg caccatcgcg ccgtcggagc ggcggaggcg cacgctgtca atcaccgtgt
    12721 aagccttgtc ccagtactcg ctcgccacgg cgcggccgcg cccctgatac caatagacga
    12781 ggaggtggcg gtcgcctttg ttctctatca ggtagcggtt ggcctcgaag gcgggcgcgc
    12841 cgcccgcggg ctttatctcg acggcggccg ggtcgctcag cgtccagccc gttccgggca
    12901 ggcagttgag cgggctgtgg taggtcgcgc ccgttcgctg cgtcgagtag tagccgacgt
    12961 agagcgaggc cgagcgcccg tccgccgagc ggtagtcgcg cgagacgtag tcgtcggcgc
    13021 gaagcaccgc ctcggtcgcg gcgtcgaagc gcgtgtccgc gccgcgctgc tgccagccgc
    13081 cgccaagctc gcgcgggaac tcggcgaggg cgcggcgcgc gacgcgggcc tcgcccgcca
    13141 cgcccaggta gttgatgaaa gccccggccg ccacaagcac gacgacgagc gcccagaatt
    13201 gcttgccctt tgtcttcatc tagttcagtt ccgtcctccc gagcgccgcc gtgggagccg
    13261 gcgcgccccc gaccgcaggg gcgccggctt cgcccgcctg ctcggctccc tgcgcggcct
    13321 tgcgcgcggg gccgccgccg cgggggccgc gccccgcggg gttgaagcgg tcgagcagcc
    13381 agccgaaggc gatgagcagg gcgaaggccg cgatatagac gacccagccg gagaaggtgt
    13441 ggaagaagcc gtcggcgacc tcggtgccgt agaagtgcgc gagcacgccc gtcccgctca
    13501 cgcgcgcggc gttcgtgatg atggcgatgg ggacggccgc gagcactatg agcgccgagc
    13561 gcacgaaggc gtaacggcgc ccggcgcggc cgccgccgcc atcggcctcg tcgtccgagg
    13621 ggtgagtaaa gtaggcgaag acgacggcga gcgtcaccag cgtcataagg ctgcgtatgc
    13681 cgctgcaagc ctcgacgact tcgagcttct tcgtaacggt cgcgcccagg ggcaggagct
    13741 ctatgacgtt gccctcgcgc agaaccgtta tatcgaactg ccgcatcgcc cacaccgcgc
    13801 agcgcgaggc gaagagctgc aaggggaaag cgatcttgtt gaagatgatg gcgggtatcg
    13861 gtacggcgag cagcagaagc agcagaggca ccgcgaccgc ccgaagcatc ctccagcccc
    13921 agaagtagag cgcgacgcca gcgagcagca ggacgagcga cgtgcgctgc aagaacagct
    13981 cggccccggc cgtcccggcc cagagcgcga ggagcgccgc acctatgcct acgccgcccc
    14041 aaaggagcgc ggggcgcggc tcgatgcgcg agagccgtcc gcgctcagtc cagagtatgt
    14101 agccgatgac taagggtatg agcaggccgt gcgagtagtt ctcgtcctcc caccagaagc
    14161 gcgccaaccg cgcgagcacg ccccagtaga ggaaggccac ggcccccgcg agtatgaggg
    14221 gcttgtagag tcggctcgcg gtcaggtttt gcatgggggt tcgttaacag tccgggcctc
    14281 aaggcgaaac gccccggcag gtttcgtgag cggagtgcgc cctccggcgc ggccccgagg
    14341 gaaaagctta acgcgaaccc cgcgccgcgg gcaacaaaaa agggcggccg gtacgctttc
    14401 gcgctcaagc cccctccccc agaagctcac ggtagagatc gaagactgct gcgacgttct
    14461 cgtcggcggc ggcgccgttc gcggggcgct cgcggcggcc gagcgagagc tgctcgccaa
    14521 cggcctcgac gagcgcgggc ccgtccgaga cggggatgag gcgcac
//
LOCUS       DASPKR010000238        10824 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_806972, whole genome shotgun sequence.
ACCESSION   DASPKR010000238 DASPKR010000000
VERSION     DASPKR010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10824)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10824
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_806972"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VD968_06530"
     CDS             <1..193
                     /locus_tag="VD968_06530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14079.1"
                     /translation="ASGGGCDANIFNKKGIECANLGTGMRAIHTVKEWLDVKDMYASA
                     RMTVEIMRLNGEQAMAAKG"
     gene            216..1160
                     /gene="era"
                     /locus_tag="VD968_06535"
     CDS             216..1160
                     /gene="era"
                     /locus_tag="VD968_06535"
                     /inference="COORDINATES: protein motif:HMM:NF000908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HYE14080.1"
                     /translation="MADETREGGGEAGARQGGYRGGYVALVGRPNAGKSTLLNRLVGE
                     KIAAVSNKPQTTRHQIRGVITRPEGQVVLVDTPGVHQPGYLLNRRMMSAVHDALEGVD
                     LVCLIRDASVPTGNGDRFVLDLVKKTAKPAVLLLNKTDKLQDKRELLPLIEWYSREHE
                     WRAVVPLSARTGDQLEDLVKELISHLPEGEPIFAEDELTDQPMRVLVAEMVREKILRV
                     TGEEIPYVTAVVTERYEEVSEDLARIYCAVYVERPSQKSIIIGKGGQRLKEVGTLARK
                     DIERLLGHRVYLELFVKVEEGWRDSPRALNEMGIEEKK"
     gene            1164..2006
                     /locus_tag="VD968_06540"
     CDS             1164..2006
                     /locus_tag="VD968_06540"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF018076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HYE14081.1"
                     /translation="MWHAVDVCLSGRAVEAVEYALMEAGARGTEVLSEGGESARVAGY
                     FDSPPSVESVRAALLEALRIYGLESSDVRELRPREVAEADWLAEWKKGWRPVEVGESI
                     VVAPPWSEVPREPGRVVIRVEPGMAFGTGTHETTRLCLAAVERHFAGGRLLDVGTGTG
                     ILAIAAAKLRPQARVEACDTDPLAVEVARENARVNGVADRIEFRVGSVEETTASADVT
                     CANLTADVIVPLLPLLLGATCGRLILSGILAPQSEAVRARLDELGVSDCELTAEGEWV
                     AMVI"
     gene            2012..2758
                     /locus_tag="VD968_06545"
     CDS             2012..2758
                     /locus_tag="VD968_06545"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: protein motif:HMM:NF008692.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HYE14082.1"
                     /translation="MTRRRFYAPRDAFARGGAEVVLSAEESRHLRDVLRLRAGDEVSV
                     FDGEGREFACVVKETGGRATLEVRAPAVAPSPESPVEITLGVALLKGEKFDLVVQKAT
                     ELGVARVAAVETARADVRLRDERDAARRVERWRRLALEAAKQSGRARVPAIEPPVALD
                     SFLRGAGAADPRLLFAERGGSAFDALAPSRPPAVTALVGPEGGWDDAETASAAEHGWS
                     IVTLGGRVLRAETAAIVVAALLQHTYGDLR"
     gene            complement(2768..5200)
                     /locus_tag="VD968_06550"
     CDS             complement(2768..5200)
                     /locus_tag="VD968_06550"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE14083.1"
                     /translation="MKLRLLLLLVLAAAPCAEARQRSRAPRPAAAVKAAPAATTTNTL
                     PIRRVILYSNGVAYIERRGTITGRAEINLSFKQSQVDDVLKSMIVLDLGEGRIGAVSY
                     NSSAPPAARMADIPFSIAAGTRGEAGGGLAGVLGQLHGARVVVTTKSGRVASGSILTV
                     EERRTPAGPDGQSRVTHALVLASEGGELSSFDLSEVRAVRLADEGARRDIGEFAAATA
                     SARRRDAKTITVTSDGAGAREMIVSYTIAAPIWKTTYRVVLDGQDGKPFFQGWAIVDN
                     VSEEDWEGVQLSLISGTPVSFIQPIQKPFYRYRPVVPMPEDLQLRPQTHEPDSGELAA
                     NVITGEVKDPNGAAVTGATVIVTNEETGQSFVTNTNDEGSFRTQPLLAGNYTVRVEAP
                     GFTRYEMQDVAVSHRRPSDVEVELRPAGVAETVTVTAEGGGGGGGRRFLPNSVNNLVL
                     NTSETSVGRADSTISAAVAGGRSGVEAAAEGAEVGDLFEYQIARPVTVRRDRSALIPI
                     VQTRMDGARVSVFNEASRRNRPMSGLLLKNTSRLTLEDGALTVIDGNAYAGESLMERL
                     KPSEQRLVPFALDLGTLVTVRDAEETSPAFLVRIAGGTLYANYHNRARKLYTLTNQTD
                     NPRTVYVEHPVREGWELDDRETPKPEGKSARFYRFRVELGARESKQLTVSERSRAVET
                     YAVSNITPDQLRLFVLHRYVDEPTRAALQNILDLKARAAAAEARVEQIDAEIAEIGAD
                     QKRLRENIEALNKTAEARQLIARYVAKADQQETRLEQLTREKQAAAAERQRLEAELNA
                     AIRALSLERNLT"
     gene            5510..6940
                     /locus_tag="VD968_06555"
     CDS             5510..6940
                     /locus_tag="VD968_06555"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYE14084.1"
                     /translation="MNRRNLAAHVALALTFVMVAAVAGHLSRLGTGKKEAVTGVLVGV
                     GEGGAAPRAVSAEEAGEPEVLVRFRAGVPRERVEEIAMSFGDRVEDEIESVENLYAVD
                     DLEGETAALVAGEYGALPEVEYVEENARIDLSPLEGRELGRGIEDAEAGGPNDPLLGE
                     QWGLINRGQRSGKDKADISALQAWAKTHGSERVVVAVLDSGVDYTHPDLVNNLWLRPD
                     DLDPYYDDETGEVEDYRGFSAVSPERDPMDENGHGTHCSGIAGAEGDNGIGITGVNWK
                     VEIMPLKFMGKGGYGSTKDAIEAINYVIKRKRDGVNVRVISASWGSRQKSRALEEVIR
                     RAGDEGILFVAAAGNNSENADRFPHYPSGYQLPNVLAVAALDRRDELARFSNYGAKSV
                     HVAAPGAEILSTWLGDSYREASGTSMATPMVAGVAALVLSCEPNLSVAELKERLMSTS
                     DSIATLQGKVVSGGRVNAARAVGAVR"
     gene            7080..8612
                     /locus_tag="VD968_06560"
     CDS             7080..8612
                     /locus_tag="VD968_06560"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF012589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046316 - gluconokinase activity [Evidence
                     IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA];
                     GO_process: GO:0046177 - D-gluconate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HYE14085.1"
                     /translation="MTVAAREAARPFVLALDVGTSSVRAALYDSAAREVEGARARVEW
                     SFSTTADGGAEVEADAAVALAAGVVDRALTLAEGEGVRRVELLATACFWHSLVGVDDE
                     GRAVTPVYGWADTRAASDAAALREQMDERETHARTGCRFHASYWPAKLLRIKRERPAE
                     WRAARRWMTFGELLMLRLCGAGAASVSMASGTGLLNLRACEWDAPLATTLGVKAEQLP
                     ALARDGETFALTEEFAARWPALRGARVLAPVGDGAANNIGEACASRERAALMVGTSAA
                     MRVVYEGEPPASLDPALWCYRADRRRVAVGGALSDGGGLFAWLKRTLATGARDGEALE
                     RALDATGPDAHGLTVLPFWSGERSTGWHPFASGAVLGLTAHTRPEEIVRACLEAIAYR
                     LALVARSLDAHAPGAEVRASGGALRASPPWAQMISDVLGRPLRLSAAGEASARGAVLL
                     ALEAAGAIKSVADFEAPAAAAVEPDEARHAVYLRASGRQQRLYELLVGDQQTARLLRT
                     PV"
     gene            8636..10717
                     /gene="tkt"
                     /locus_tag="VD968_06565"
     CDS             8636..10717
                     /gene="tkt"
                     /locus_tag="VD968_06565"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HYE14086.1"
                     /translation="MSASATTRDTTPELNQLCINTIRALSLDAVQRAESGHPGLPLGA
                     APMAYCVWSRFLRHSPENPKWPGRDRFLLSAGHGSMLIYSLLHLTGYDLPLEELMRFR
                     QWGSKTAGHPENVLTPGVEITTGPLGQGFANGVGMAMGAAHLAARFNRPGFPLIDNYV
                     YAIVSDGDLMEGVASEAASLAGHLKLGKLIYLYDDNRVTIEGFTSLAFTEDVPRRFDA
                     YGWHTLTVEDGNDLDAIGSAIREAQAESDRPSLISVKTVIGFGMPTEGTRKAHSDAPG
                     ADAVRETKRKLGWPEDREFYIPDEALAHFRKAVERGRQWEQEWRSLAERYEREHPEEA
                     RAWRETMGVELPEGWERHLPSFEGAKPMATRAASGEVINALAPHMPMLFGGSADLGPS
                     NNTDIKEGGSFQHGSYDGRIIHFGVREHAMAATMTGVSLNGGLIPFGGTFLCFADYMK
                     PAIRLAALSEVQVIYVFTHDSVGLGEDGPTHQPIEQLAMLRAVPHLHVFRPADVHEVR
                     EAWRHAILRRHAPSALILTRQKVPLIDRARFAAAEGARRGAYTLADSTFTGARPIAAP
                     ASPTFVEDEPCEPRLVIIATGSEVALALEARERLQKEGTPTRVVSMPCWELFEEQPRE
                     YRDSVIPPAVGARLGVEAGSTLGWHRWVGDRGDVLGLDRFGGSAPGDTALRELGFNAE
                     DVIARARALLK"
BASE COUNT         1648 a         3691 c         3847 g         1638 t
ORIGIN      
        1 cgcctcgggc ggcggctgcg acgccaacat cttcaacaag aagggcatcg agtgcgccaa
       61 cctcggcacg ggcatgcgcg ccatacacac cgtcaaggag tggctcgacg tcaaagacat
      121 gtacgcctcc gcccgcatga cggtcgagat aatgcgcctg aacggcgagc aggcgatggc
      181 cgcaaagggc taggccggtc aaggggtttt cgcgcatggc cgacgagacg cgggagggcg
      241 ggggcgaggc gggcgcgcgg caaggcggct accgcggcgg ctatgtggcg ctcgtcgggc
      301 gcccgaatgc ggggaagtca acgcttctga acaggctcgt gggcgagaag atagcggccg
      361 tctcgaacaa gccgcagacc acgcgccacc agattcgcgg cgtaatcacc cgccccgagg
      421 ggcaggtcgt cttagttgac acgccgggcg ttcaccagcc cggctacctc ctgaaccgac
      481 gcatgatgtc ggccgtccac gacgcgctcg aaggcgttga cctcgtctgc ctcatacgcg
      541 acgcgagcgt gcctacgggc aacggcgacc gcttcgtcct cgacctcgtc aagaagacgg
      601 cgaagcccgc agtcctcctc ctgaacaaga cggacaagct tcaggacaag cgcgagctcc
      661 tgccgctcat cgagtggtac tcgcgcgagc acgagtggcg cgccgtcgtg cctctgtcgg
      721 cgcgcaccgg cgaccagctc gaagacctgg taaaggaatt aatcagccac ctgcccgagg
      781 gcgagccgat attcgcggag gacgagctga cagatcagcc gatgcgcgtg ctcgtcgccg
      841 agatggtgcg cgagaaaatc ctgcgcgtga cgggcgagga gattccttac gtcacggccg
      901 tcgtcaccga gcgctacgag gaggtgtcgg aagaccttgc gcgcatctac tgcgccgttt
      961 acgtcgagcg cccgtcgcag aagagcatca tcatcggcaa gggcggccag cgcctcaagg
     1021 aggtaggcac gctcgcccgc aaggacatcg agcggctgct cggccaccgc gtctatctcg
     1081 agctcttcgt caaggtcgag gagggctggc gcgattcgcc ccgcgccctg aacgagatgg
     1141 gcatcgagga gaagaagtga agggtgtggc acgcggttga cgtttgcttg agcgggcgcg
     1201 cggtcgaggc cgtcgagtac gcgctgatgg aggccggcgc ccgcgggacg gaagttttga
     1261 gcgagggcgg agagtcggcg cgcgtggccg gctacttcga ctccccgccc tcggtcgaga
     1321 gcgtgcgcgc ggccctgctc gaagccctgc gaatctacgg gctcgaatct tcggacgtgc
     1381 gcgaactgcg gccgcgcgag gtcgcggagg ccgactggct cgccgagtgg aagaaaggct
     1441 ggcggcccgt cgaggtcggc gagtcaatcg tagtcgcgcc cccgtggagc gaagtcccgc
     1501 gcgagccggg gcgcgtcgtc atacgcgtcg agccgggcat ggccttcggc acggggacgc
     1561 acgagacgac gcggctgtgc ctcgcggcgg tcgagcgcca cttcgcgggc ggccggctcc
     1621 tcgacgtggg caccggcacg ggcatactcg ccatcgccgc cgcgaagctg cgcccgcagg
     1681 cgcgcgtaga agcctgcgac acagacccgc tcgccgtaga ggtcgcgcgc gagaacgcgc
     1741 gcgtgaacgg cgtcgccgac cgcatcgagt tccgcgtcgg ctcggtcgag gagacgaccg
     1801 cttcggccga cgtgacctgc gcgaacctca cggccgacgt gatcgtcccg ctcctccccc
     1861 tcctgctcgg cgccacctgc ggccggctga tactctccgg catactcgcg ccccagtcgg
     1921 aggcggtgcg cgcacgcctc gacgagctgg gcgtctcgga ttgcgagttg acggccgagg
     1981 gcgagtgggt ggcgatggtg atttaaacgg gatgacgcgc cggaggttct acgcacccag
     2041 agacgcgttc gcgcggggcg gcgcggaggt ggtgctgtcg gccgaggagt cgaggcacct
     2101 cagagacgtt ctgcgcctgc gcgcgggcga cgaggtctcg gtcttcgacg gcgaggggcg
     2161 cgagttcgcg tgcgtggtaa aggagacggg cgggcgcgcg acgctcgaag tgcgcgcgcc
     2221 ggccgtggcg ccctcgccgg aatcgcccgt cgagattacg ctcggcgtcg ctctcctcaa
     2281 gggcgagaag tttgacctcg tggttcagaa ggcaaccgaa ctgggtgtgg cgcgcgtcgc
     2341 cgccgtcgag accgcgcgcg ccgacgtgag gctgcgcgac gagagggacg ccgcccggcg
     2401 ggtcgagcgc tggcgccggt tggcgctcga ggccgcgaag cagtcgggcc gcgcgcgcgt
     2461 ccccgcaatc gagccgcccg tggcgctcga ctctttcctt cgcggcgccg gggcggcgga
     2521 cccgcgactc ctcttcgcgg agcgcggcgg ctcggcgttc gacgcgctcg caccttcccg
     2581 ccctccggcc gtcacggcgc tcgtcgggcc ggagggcggc tgggacgacg ccgagacggc
     2641 ttcggccgcc gagcacggct ggtcaatcgt cacgctcggc ggccgagtct tgcgcgccga
     2701 gacggcggcc atcgtcgtag ccgccctcct gcaacacaca tacggcgacc tcaggtaaat
     2761 cccacggtca ggtgagattg cgctctagcg agagggcgcg tatggctgcg ttcaattcgg
     2821 cctcaaggcg ttgacgctcg gcggcggccg cctgcttttc gcgcgtgagc tgttcgaggc
     2881 gcgtctcctg ctggtcggcc ttggcgacgt agcgcgctat gagctggcgc gcctcggccg
     2941 tcttgtttag cgcctcgatg ttctcgcgca ggcgcttctg gtcggcgcct atctccgcga
     3001 tctccgcgtc tatctgctcg acgcgcgcct ccgcggccgc ggccctcgcc ttgaggtcga
     3061 gtatgttttg cagcgccgcg cgcgtcggct cgtccacgta gcggtgcagg acgaagagcc
     3121 ttagctggtc gggcgtgatg ttcgagacgg cgtaggtctc gaccgcccgc gagcgctcag
     3181 acaccgtcaa ctgtttcgac tctcgcgcgc ccagctcgac gcggaagcgg tagaagcgcg
     3241 cgctcttgcc ctcgggcttc ggcgtctcgc ggtcgtccag ctcccagccc tcgcggacgg
     3301 ggtgctcgac gtaaacggtg cgcgggttat ccgtctggtt cgtgagcgtg tagagcttcc
     3361 tggcgcggtt gtggtagttg gcgtagagcg tgcctcctgc gatgcggacg aggaaggcgg
     3421 gcgaggtctc ctccgcgtcg cgcaccgtca cgagcgtgcc gaggtctagg gcgaagggga
     3481 cgagccgctg ctccgagggt ttcagccgct ccatcagcga ctcgccagcg taggcgttgc
     3541 cgtcaatgac ggtgagcgcg ccgtcctcga gcgtcaggcg cgaggtgttc ttcagcagca
     3601 gccccgacat cgggcggttg cgccgcgaag cctcgttgaa gacggagacg cgcgcgccgt
     3661 ccatgcgcgt ctgcacgatg gggatgagcg cggagcggtc gcgcctgacg gtgacggggc
     3721 gggctatctg gtactcgaag aggtcgccga cctccgcgcc ctcggccgcc gcctcgacgc
     3781 cggagcgccc gcccgcgacc gccgcgctga tggtcgagtc ggccctgccc acgctcgttt
     3841 cagaggtgtt gaggacgagg ttgttgactg agttcgggag gaagcggcga ccgcccccgc
     3901 ctccgccgcc ctcggccgtc acagtcaccg tctccgcgac gcccgcgggg cgaagctcca
     3961 cctcgacgtc agaggggcgc ctgtggctga cggcgacgtc ctgcatctcg tagcgcgtga
     4021 agccgggcgc ctcgacgcgc acggtgtagt tgccggccag tagcggctgc gtgcggaagc
     4081 tgccctcgtc attcgtgttg gtgacgaagg actgccccgt ctcttcgttc gttacgatca
     4141 cggtcgcccc ggtgacggcc gcgccgttcg ggtctttcac ctcgcccgtg atgacgttcg
     4201 ccgccagctc gcccgagtcg ggctcgtgcg tctgcgggcg cagttgcagg tcttcgggca
     4261 tcggcacgac ggggcggtag cggtagaacg gcttctgtat gggctgtatg aaagagacgg
     4321 gcgtccccga gatgagcgag agctggactc cctcccagtc ctcctcgctc acgttgtcaa
     4381 cgatggccca gccttggaag aagggcttgc cgtcctgccc gtcgaggacg acgcggtagg
     4441 tcgtcttcca gatgggcgcg gctatggtgt agctcactat catctcgcgc gcgcccgcgc
     4501 cgtcgctcgt caccgtgatg gtcttcgcgt cgcggcggcg ggcgctggcg gtcgcggcgg
     4561 cgaactctcc tatgtcgcgg cgcgcgccct cgtctgcgag gcggactgcg cgaacctctg
     4621 agaggtcgaa gctcgaaagc tcgccgccct ccgaggcgag cacgagcgcg tgggtgacgc
     4681 gcgactggcc gtccgggccg gcgggcgtgc gccgctcctc gaccgtgagt atagagcccg
     4741 aggccacgcg cccagacttc gtggtgacta cgacgcgcgc gccatgtaac tggccgagca
     4801 cgcccgcgag accgccgccg gcctcgcccc tggttcccgc tgcgattgag aacgggatgt
     4861 ccgccatgcg cgcggcgggc ggggccgacg agttgtagct gacggcgccg attcggccct
     4921 cgccgaggtc gagcacgatc attgacttga gcacgtcgtc aacctgcgac tgcttgaacg
     4981 agaggtttat ctccgcgcgg ccggtgatcg tgccgcgccg ctcgatgtag gctacgccgt
     5041 tgctgtagag gattacgcgg cggatgggga gcgtgtttgt cgtcgtcgcc gcgggcgcgg
     5101 ctttgacggc cgccgccggg cgcggtgcgc gtgaccgctg gcgcgcctcc gcgcaaggcg
     5161 ctgccgcgag cacgaggaga agaaggagcc tgagcttcat ggtgggcctc cggaaagtca
     5221 gaaagatggg cttgaaggtt cagaggggtg cggcggctcg gcgggcgggt gacttaggga
     5281 gtagtcccgc acgacgacgc cgggggagac cggcgaaacg tcctcgacgt ttcggcgtgc
     5341 tgccttcctt gatgccgact tagcgccgga gggttgaccg gccctgcgcg cggtgctcat
     5401 tgacggcccc caagccgcgg gagcagaata aacctcgcgc gccgaagggt agtggagttg
     5461 aacaaagggg gcggcgcgcc cgtatttgag ttcataagga gttcaggcga tgaaccgtcg
     5521 taatttagcc gcgcacgtgg cgctggccct gacgttcgtg atggtggccg cggtggcggg
     5581 gcatctctcg cgcctcggga cggggaagaa agaggccgtg acgggcgtgc tggtgggcgt
     5641 cggggaaggc ggcgcggcgc cgcgcgccgt gagcgccgag gaggcgggcg agcccgaggt
     5701 gctcgtgcgc ttccgcgccg gagtcccgcg cgagcgggtc gaggagatcg ccatgagctt
     5761 cggcgaccgc gtcgaggacg agatcgagtc ggtcgagaac ctctacgcag tggacgacct
     5821 cgaaggcgag acggccgcgc tggtcgcggg cgagtacggc gcgctcccag aggtagagta
     5881 cgtcgaggag aacgcgcgca tagacttgag cccgctcgaa ggccgggagc tgggccgcgg
     5941 catagaagac gccgaggccg gcggccccaa cgaccctctg ctcggcgagc agtggggtct
     6001 catcaacagg ggccagcgct ccggcaagga caaggcagac ataagcgccc tgcaagcctg
     6061 ggccaagacg cacgggagcg agcgagtcgt cgtcgccgtc ctcgacagcg gcgttgacta
     6121 cacgcacccc gacctcgtca acaacctgtg gcttcggccc gacgacctcg atccttacta
     6181 cgacgacgag accggcgagg tcgaggacta ccggggcttc agcgccgtct ccccggagcg
     6241 cgacccgatg gacgagaacg ggcacggcac gcactgctcc ggcatcgcgg gcgccgaagg
     6301 ggataacggc ataggcatca ccggcgtcaa ctggaaggtc gagataatgc cgctcaagtt
     6361 catgggcaag ggcggctacg gctcgacgaa ggacgctatt gaggccatca actacgtcat
     6421 caagcgcaag cgcgacggcg tcaacgtccg tgtgattagc gcgagctggg gctcgcggca
     6481 gaagtcgcgc gcgctcgaag aggtcatacg cagggcgggc gacgagggca tcctgttcgt
     6541 cgccgccgcc ggcaacaact cggagaacgc agaccgcttc ccgcactacc cgtcgggcta
     6601 ccaactgccg aacgtgctcg cggtggccgc gctcgaccgc cgcgacgagc ttgcgcgctt
     6661 ctccaactac ggcgctaaga gcgtccacgt cgccgcgccc ggcgcggaga ttctgagcac
     6721 gtggctcggc gactcgtacc gcgaggcttc cgggacttcg atggcgacgc cgatggtcgc
     6781 gggcgtcgcc gcgctcgtcc tctcctgcga gccgaacctg tcggtcgcgg agcttaaaga
     6841 gcggctgatg agcacgtccg acagtatagc tacgctgcaa ggcaaggtcg tctccggcgg
     6901 ccgcgtcaac gccgcccgcg ccgtcggcgc cgtgcgctaa agtcaagaca gggggcgggc
     6961 cgttcattca ggcccgcccc tctgactttc ccttccttac ctttcatcaa acataactcg
     7021 tcacccccgc tgcctttcgg tatcatgccc gcgtggcggg ggcgggtgaa ggcagagggt
     7081 tgacggtcgc ggcgcgcgag gcggcgcggc cgtttgtgct cgcgctcgac gtgggcactt
     7141 cgtccgtgcg cgcggccctg tacgactcgg ccgcgcggga agtggagggg gcgcgggcgc
     7201 gcgtcgagtg gtcgttcagc acgacggccg acggtggcgc cgaagttgag gcagacgccg
     7261 cggtcgcgct cgcggccggt gtggttgacc gcgcgctcac gttggccgag ggcgaaggcg
     7321 taaggcgcgt agagcttttg gcgacggcct gcttctggca cagcctcgtc ggcgtggacg
     7381 atgaagggcg cgccgtcacg ccggtctatg gctgggccga cacgcgcgcg gcctctgacg
     7441 ccgcggcgct gcgcgagcag atggacgagc gcgagacgca cgctcgcacc ggctgccgct
     7501 tccacgcgag ctactggccc gcgaagctcc ttcggattaa acgcgagcgc cccgccgaat
     7561 ggcgcgcggc ccggcgctgg atgacgttcg gcgagctgct gatgctccgt ctctgcggcg
     7621 cgggcgcggc ttcggtctcg atggcttccg gcacagggct cctgaacttg cgcgcctgcg
     7681 aatgggacgc gccgctcgcc acaacgctcg gcgtcaaagc cgaacaactc cccgcgctcg
     7741 cgcgcgacgg cgagaccttc gcgctgacgg aagagttcgc cgcgcgctgg ccggctctgc
     7801 gcggggcgcg ggtgctcgcg cccgtcggtg acggcgcggc gaataacatc ggcgaggcgt
     7861 gcgcgtcgcg cgagcgcgcg gcgctgatgg tgggcacctc cgccgcgatg cgcgtggttt
     7921 acgagggcga gccgcccgcc tctctcgacc ccgcgctctg gtgctaccgc gctgaccgcc
     7981 gccgcgtggc agtgggcggc gcgctctccg acggcggcgg cctcttcgcc tggctcaaac
     8041 ggacgctcgc gacgggcgcg cgcgacggcg aagcgttaga gcgcgctctc gacgcgacag
     8101 gcccggacgc gcacggcctg acggtgctgc ccttctggtc gggcgagcga agcacgggat
     8161 ggcacccgtt cgcctcgggc gccgtgctcg gcctgacggc gcacacgcgc cccgaagaga
     8221 tcgtccgcgc ctgcctcgaa gccatcgcct accgcctcgc gctcgtcgcg cgctcgctcg
     8281 acgcccacgc gcccggcgcc gaagtgcgcg cctcgggcgg cgccctgcgc gcgagcccgc
     8341 cctgggcgca gatgatctcc gacgtgctgg ggcgccccct tcgtctctcc gccgcgggcg
     8401 aggcttcggc gcgaggcgcg gttctgcttg cgctcgaagc cgcgggcgcg ataaaaagtg
     8461 tcgccgactt tgaagcaccg gccgccgccg cggtcgagcc cgacgaggcg cgccacgccg
     8521 tttaccttcg cgcctccggg cgacagcaga ggctttacga gcttctcgtc ggcgaccagc
     8581 agacggcacg ccttttaaga actcccgttt gaaaacttca gaagcgagga accgcatgag
     8641 cgcatcagcg acgaccaggg acaccacgcc ggagctaaac cagctctgca taaacacaat
     8701 ccgcgctctc tcgctcgacg ccgtgcagcg cgcggagtcg ggccaccccg gcctcccgct
     8761 cggggcggcg ccgatggcct actgcgtatg gtcgcgcttc ctgcgccaca gccccgagaa
     8821 cccgaagtgg cccggccgcg accgctttct gcttagcgca ggccacggct cgatgctcat
     8881 ctactcgctc ctgcacctga ccggctacga cctccctctc gaagagctga tgcgcttccg
     8941 ccagtggggc tcgaagaccg cagggcaccc cgagaacgtt ctgacgcccg gagtggagat
     9001 aacgacgggg cctctgggtc agggcttcgc aaacggcgtc ggcatggcta tgggcgccgc
     9061 gcacctcgcc gcgcgattca accgccccgg cttcccgctc attgacaact acgtctatgc
     9121 aatcgtctcg gacggcgatt tgatggaggg cgtcgcgtcc gaggccgcct cgctcgccgg
     9181 ccacttgaag ctcggcaagc tcatctacct ctacgacgac aaccgagtca ccatcgaggg
     9241 cttcacctca ctcgccttca ccgaggacgt gccgcgccgc ttcgacgcat acggctggca
     9301 cacgctcacc gtcgaggacg gcaacgactt ggacgcaatc gggtccgcga tccgcgaagc
     9361 gcaggccgag agcgaccgcc cctccctcat ctccgtcaag accgtcatag gcttcggcat
     9421 gccgacagaa gggacgcgca aggcgcactc ggacgcgccc ggcgccgacg ccgtgcgcga
     9481 gacgaagcgc aagctcggct ggcccgaaga ccgcgagttc tacatccccg acgaggcgct
     9541 cgcccacttc cgcaaggctg tcgagcgcgg ccggcagtgg gagcaggagt ggcgctcgct
     9601 cgccgagcgc tacgagcgcg agcacccgga ggaggcccgc gcgtggcgcg agacgatggg
     9661 cgtagagctg cccgaaggtt gggagcggca cctgccctcg ttcgagggcg cgaagccgat
     9721 ggctacgcgc gccgcctcgg gcgaggtcat aaacgcgctc gctccgcaca tgcctatgct
     9781 cttcggcggc tcggccgacc tcggcccgtc gaacaacaca gacataaaag agggcgggag
     9841 cttccagcac ggctcgtatg acggtcgcat catccacttc ggcgtgcgcg agcacgcgat
     9901 ggccgcgacg atgacgggcg taagcctcaa cggcgggctc atccccttcg gcggaacctt
     9961 cctgtgcttc gccgactaca tgaagccggc catacgcctc gcggcgctct ccgaagtgca
    10021 ggtcatatac gtcttcacgc acgactccgt gggcttgggc gaggacgggc cgacgcacca
    10081 gcccatagaa caactcgcga tgctgcgcgc cgtgccgcac cttcacgtat tccgcccggc
    10141 cgacgtgcac gaggtgcgcg aggcgtggcg ccacgccata ctgcgccgcc acgcgccgtc
    10201 cgccctcata ctcacgcgcc agaaggtgcc gctcatagac cgcgcgcgct tcgccgcggc
    10261 cgagggcgcg cgccgcggcg cctacacgct cgccgactcg accttcacgg gcgcgcggcc
    10321 catcgccgcg ccggcctctc ccactttcgt cgaggacgag ccctgcgagc cgcgcctcgt
    10381 catcatcgcc acggggtcgg aagtcgcgct cgcgctcgaa gcgcgcgaac gcttgcagaa
    10441 ggaaggcacg ccgacgcgcg tcgtctcgat gccctgctgg gagctgttcg aggagcagcc
    10501 gcgcgagtac cgcgacagcg tcatcccgcc cgcggtcggg gcgcgcctcg gcgtcgaggc
    10561 cggctccacg ctcggctggc accgttgggt cggcgaccgt ggggacgtgc tcggcctcga
    10621 ccgcttcggc ggctccgccc ccggcgacac cgccctgcgt gagctaggtt tcaacgccga
    10681 ggacgtcatc gcccgcgccc gcgcgttgct gaagtaaagg ctgactgatg gaggcgcgca
    10741 tctccttcag aagacgacgc gcaacgcggc cggcaggacg cgcagctcga cgggcgtgaa
    10801 gccgcgcacg tcgccgtcgg cctc
//
LOCUS       DASPKR010000239         6138 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1065751, whole genome shotgun sequence.
ACCESSION   DASPKR010000239 DASPKR010000000
VERSION     DASPKR010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6138)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6138
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1065751"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..669
                     /locus_tag="VD968_06570"
     CDS             <1..669
                     /locus_tag="VD968_06570"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14087.1"
                     /translation="ELAYAYGVSLVRVGDAGAAQVFARMAEAHRQSAPARFLAAQGFM
                     LVQDYERALAEFRGVAELDPRLAQAHYNAGQSLIRLNRLAEAEAEFRRELLINPSDVP
                     AKYHLAYTLLEQKRDEAEALALLREAVAARPDYADARYQLGKALLERGAVAEAVEHLE
                     AAARSAPSKDYVRYQLSIAYRRASRPADAERELQLYKELKAANRGGREPQPQATTDGR
                     RDAP"
     gene            647..2209
                     /locus_tag="VD968_06575"
     CDS             647..2209
                     /locus_tag="VD968_06575"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14088.1"
                     /translation="MAAAMRLSSDTRRRALALAALALLALCAGGAAAQGEVGRGDALA
                     AAERSIARGRLDEAEKPLLDYAVAHPKDARALELLGLLRQRQGRFEEARSLYARAVAL
                     DPASARAKISLAEAELALGRAAEARSLLAEVVKSPPAEARARLWLAETLLKAGRPRDA
                     LAVAGALPASLKRAEALPVEAEALAALGERQKLAALIPSVRAAAPARPDVAARCAEVL
                     AAAGMTEQAAAVLRQALASAPSDAGVLTSLGRLETAAGRLAQARKLLERAAAVAPDSP
                     GALAALAALQTAEGDAAAAFSTLERARALDPESPRLLAQFVLAAMRAGRSRAAVEAAG
                     ELLRLRPDEPESLYLLGAASLQAGSLQRAQEALESYTRARPQDSRGCLALGLALAGQH
                     DKLDAARAQLERCLRLDPSNVEAMYQLGLSHKARGEAERAALLLEKAVALAPRNALAL
                     RDLGSVYLQAGDAAKARAVLERALAVDPDDAETHFLASRAYGRLGEAALAARHLETFQ
                     RLKSQRENAPAP"
     gene            2206..3954
                     /locus_tag="VD968_06580"
     CDS             2206..3954
                     /locus_tag="VD968_06580"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HYE14089.1"
                     /translation="MTKSAPAVILITLLACGVAAPARQKPAADCAGRAVPRLTDVTAK
                     TGIRFTHTSAPEKKYIVESMSGGVLLVDYDRDGWQDIYFTNAPTVEMALKGQKARSAL
                     YRNNRDGTFADVTDRAGVAYPGFAMGGAVGDYNNDGWPDLYVTCLGGNVLYRNNGDGT
                     FTDVTRQAGVADGRWSAGAAFADYDGDGLEDLFVANYVDFKLDDLPGFGSAPTCKFRG
                     LDVQCGPRGLKGAGDSLFRNAGGGRFEDATKAAGVADPGGFYGMQPVWADLGGRGRPD
                     VYVANDSTPNFLYRFEGGGRFADVGLESGTAVSGDGSEQGSMGVAVGDYLRTGRLSLF
                     VTNFADEYNTLYRNDGGYNFTDVSFAAGVAQASRPYVGWGTAFFDVDNDGWLDLLVVN
                     GHVYPQIDTLPSGARYRQPKLLHVNLGNGTFCDASRQAGPALEEARASRGAAFGDLDN
                     DGQIDVVVNDLDGPPMVLRNEGGAGNNWVTLELAAKKGSPLAVGASVRAVVGGSAQVE
                     EVRSGASYLSQNDLRLHFGLGKAPKVDLVEIRWPSGRVEQLKDLAAGKFYAVLEGEGV
                     VPFERIRPPAPNVKKN"
     gene            3960..5774
                     /locus_tag="VD968_06585"
     CDS             3960..5774
                     /locus_tag="VD968_06585"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HYE14090.1"
                     /translation="MGRMDRIKDKKDLRFGISNLKSHILLILTIPVNFLFPPPARAIS
                     FEDVSAGSGLVVPHVSTPEKRYIIESMSGGAALLDCDSDGRLDVAAVLGSSVERFRAG
                     GDPFVTLYRQAAAAAAGAAPKFEDVTRAAGLARKGWGMGVTAADYDDDGLTDLFVTGY
                     GGNALYRAAGPCRYEDVTERAGVRGAGFATGAAWADYDRDGDLDLFVARYVSVDLSNL
                     PEFGSSPKTCTYRGIRVQCGPRGLPGETDLLYRNRGDGTFEEASAKAGVADERKHYGM
                     QPAFADYDDDGWPDLFVANDATYNYLYRNNRDGTFREVGAVLGVAYGESGSEQGSMGA
                     TWGDFDLDGRLDLFVSNFEGEPNALYRNLGTAGFADVTLTSRIGQPSLPYVGWGTAFV
                     DFDNDGLEDLLVANGHVYPQIDLAKGRYETGYRQHFLLFRNAGGGRFDEVSGSAGLRA
                     LPMLSRRGAAFGDINDDGLVDAVVINLGEPPTLLLNTTQTENESVTVRLARAKGNRAA
                     LGARVTLRTSKRLMTREAQAGASYLSQNDARLHFGLGRGEKIERVEVRWPGGETEAVS
                     GVEPGRAVTVTQGKGLTASLPYRPRPALTSRGAATRRP"
     gene            complement(5740..>6138)
                     /locus_tag="VD968_06590"
     CDS             complement(5740..>6138)
                     /locus_tag="VD968_06590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14091.1"
                     /translation="ADAPRFESRSEELRRELSAWRDAASELEAVMDGSPALHEARPLA
                     DDLSALGAAGLEALSYLSRGVAAPPEWRDARLAALEQAAKPKAAVELAVVGAVRQLVA
                     AASELERLGAMTPAEWNRHVRAAASPPPAK"
BASE COUNT          917 a         2228 c         2158 g          835 t
ORIGIN      
        1 gagcttgcgt acgcctacgg cgtctcgctc gtgcgcgtgg gcgacgcggg cgccgcccaa
       61 gtcttcgcgc gcatggccga agcgcaccgc cagagcgccc cggcgcgctt cctcgccgcg
      121 caggggttca tgctggttca ggactacgag cgcgcgctcg cggagttccg cggcgtcgcc
      181 gagctggacc cgagactcgc gcaggcccac tacaacgccg gccagagcct catacgcctg
      241 aaccgcctag ccgaggccga agcagagttc cgccgcgagc tgctaattaa cccctcggac
      301 gttcccgcca agtaccatct ggcctacacg ttgcttgagc agaagcgcga cgaggccgag
      361 gcgctcgcgc tcttgcgcga ggccgtcgcc gcgcgccccg actacgccga cgcgcgctac
      421 cagctcggca aggccctgct agagcggggc gccgtcgcgg aggccgtcga gcaccttgag
      481 gcggccgcgc gctccgcgcc gtcgaaggac tacgtgcgct accagctcag catcgcgtac
      541 cgccgcgcct cgcgcccggc cgacgccgag cgcgagcttc agctttacaa ggagctgaag
      601 gccgccaacc gcggcggccg cgagccgcaa ccccaggcga cgactgatgg ccgccgcgat
      661 gcgccttagc agcgacacga ggcgccgggc gctcgcgctc gcggccttag cgctgctcgc
      721 cctgtgcgcg ggtggcgcgg cggcgcaggg cgaggtgggc cgcggcgacg cgctcgcggc
      781 cgccgagcgg agcatcgcgc ggggtaggct cgacgaggcc gaaaagcccc tgctcgacta
      841 cgccgtggcg cacccgaagg acgcgagggc tctggagctg ctcggcctgc tgcggcagcg
      901 gcagggccgc ttcgaggagg cgcgctctct ctacgcgcgc gccgtcgcgc tcgaccccgc
      961 gtcggcccgc gcgaagataa gtctggccga ggcggagctt gcgctcgggc gcgccgccga
     1021 agcgcgctcc cttctggccg aggtcgttaa gtccccgccc gcggaggcgc gcgcccggct
     1081 ctggctcgcc gagacgctcc ttaaagccgg gcggccccgc gacgcgctcg ccgtggccgg
     1141 ggcgctcccc gctagtctga aaagggctga ggcactgccc gtcgaggccg aggcgctcgc
     1201 cgcgctcggc gagcggcaga agctcgcggc cctgatccct tccgtgcgcg cggccgcccc
     1261 cgcgaggccc gacgtggccg cgcgctgcgc cgaagttctg gccgctgccg ggatgacgga
     1321 gcaggcggcc gccgtcctgc ggcaggcgct tgcctccgcg ccgagcgacg ccggggtgct
     1381 gacgagcctc ggccgtctcg aaaccgcggc cggcaggctc gcgcaggcgc gcaaactcct
     1441 ggagcgcgcc gccgccgtcg cgcccgactc tccgggcgcg ctcgccgcgc tggccgcgct
     1501 ccaaaccgcc gagggcgacg ccgccgcggc cttctccact ttagaaagag cgcgcgccct
     1561 cgaccccgag tcgccgcggc tgctggcgca gttcgtcctg gctgcgatgc gcgcgggccg
     1621 ctcgcgcgcg gccgtcgagg cggcgggcga gctcttgagg ctccgccccg acgagccgga
     1681 gtcgctctac cttctcggcg cggcgtcgct gcaagccggg agccttcagc gcgcgcagga
     1741 ggcgctcgag agctacacgc gcgcccgccc gcaggattcg cggggctgcc tcgcgctcgg
     1801 cctcgcgctc gccggccagc acgacaagct cgacgccgcg cgcgcgcagc tagagcgctg
     1861 cctgcgactc gacccgtcga acgtcgaggc gatgtaccag ctcggcctct cccacaaggc
     1921 gcggggggag gctgagcggg ccgcgctgct tctcgaaaag gccgtggcgc tcgcgccgcg
     1981 aaacgcactc gccctgcgcg acctcggctc ggtctatcta caggccgggg acgccgcgaa
     2041 ggcccgggca gtgttagagc gcgcgctcgc ggttgacccc gacgacgccg agacgcactt
     2101 cctcgccagc cgagcctacg gccgcctcgg cgaagccgcg ctcgccgcgc gccacctcga
     2161 aacttttcag aggctcaaga gccagaggga gaatgccccc gccccatgac gaagagcgcg
     2221 ccggccgtga tcttaatcac cctcctcgcc tgcggtgtgg cggcgcccgc gcggcagaag
     2281 ccggcggccg actgcgccgg gcgcgccgtc ccgcgcctca cggacgtgac ggcgaagacg
     2341 gggatacggt ttacgcacac ctcggcgccc gagaagaagt acatcgtcga gtccatgagc
     2401 ggcggcgtgc ttctggttga ctacgaccgc gacggctggc aggacatcta cttcacgaac
     2461 gccccgacgg tcgagatggc gctcaaaggt cagaaggcgc gcagcgccct ctaccgcaac
     2521 aaccgcgacg gcaccttcgc cgacgtgacc gacagggcgg gcgtcgctta ccccggcttc
     2581 gctatgggcg gggccgtcgg cgactacaac aacgacggct ggcccgacct ctacgtcacg
     2641 tgcctcggcg gcaacgtcct ctaccgcaat aatggggacg gcaccttcac ggacgtgacc
     2701 cgccaagccg gcgtcgcaga cggccgctgg tctgccggcg cggccttcgc cgactacgac
     2761 ggcgacgggc tcgaagacct cttcgtcgcc aactacgttg acttcaaact cgacgacctg
     2821 ccgggcttcg gctcggcgcc gacgtgcaag ttccgcggcc tcgacgtgca gtgcggcccg
     2881 cgcgggctca aaggggcggg cgacagcctg ttccgcaacg cgggcggcgg ccgcttcgag
     2941 gacgcgacta aggcggcggg cgtcgcagac cccggcggct tctacggcat gcagcccgtc
     3001 tgggccgacc tcggcgggcg cggccgcccg gacgtgtacg tcgccaacga ctcgacgccg
     3061 aacttcctct accgcttcga gggcgggggc cgcttcgccg acgtggggct cgagtccggc
     3121 acggccgtca gcggcgatgg ctcggagcag ggcagcatgg gcgtcgccgt cggcgattac
     3181 cttcggacgg gccggctctc cctcttcgta acgaacttcg ccgacgagta caacacactc
     3241 taccgcaacg acggcggcta caacttcacg gacgtctcct tcgccgcggg cgtggcgcag
     3301 gcgtcgcgcc cctacgtcgg ctgggggacg gccttcttcg acgttgacaa cgacggctgg
     3361 ctcgacctgc tggtcgtcaa cggccacgtc tatccgcaga tagacacgct gccgtcgggc
     3421 gcgcgctacc gccagcccaa actgctgcac gtaaacctcg gcaacggcac cttctgcgac
     3481 gcgagccggc aggccggccc cgcgctcgaa gaggcgcgcg cctcgcgcgg cgccgccttc
     3541 ggcgacttgg acaacgacgg gcagattgat gtcgtcgtca acgacctcga cggcccgccg
     3601 atggtgctgc gcaacgaggg cggcgcgggc aacaactggg tgacgctgga gcttgcggcc
     3661 aagaagggca gcccgctcgc cgtcggcgcc agcgtgcgcg ccgtcgtggg cggctcggcg
     3721 caggtggagg aggttcgcag cggcgccagc tacctttcgc agaacgacct ccgcctccac
     3781 ttcgggctgg gcaaggcccc caaagttgac ctcgtcgaaa tccgctggcc gtcgggccgc
     3841 gtcgagcaat tgaaagacct cgccgccggt aagttctacg cggtgctcga gggcgagggc
     3901 gtcgtcccct tcgagcgcat acgcccgccc gcccctaacg tgaagaaaaa ctaacagtga
     3961 tgggcaggat ggacaggata aaagacaaaa aggatttgag atttggaatt tcaaatctga
     4021 aatctcatat cctgctcatc ctgaccatcc cagttaattt cttattccct ccgcccgccc
     4081 gcgccatctc gttcgaggac gtgtcggccg ggagcggcct cgtcgtgccg cacgtctcga
     4141 ctccggagaa gcgctacatc atcgaatcaa tgagcggcgg cgccgcgctc ctcgactgcg
     4201 actcggacgg gcggcttgac gttgcggccg tccttggctc gtcggtcgaa cggttcaggg
     4261 cgggcggcga tcccttcgtc acgctctacc ggcaggcggc ggccgccgcc gcgggcgcgg
     4321 cgccgaagtt cgaggacgtg acgcgcgccg cagggttagc gcgcaagggc tggggcatgg
     4381 gcgtgacggc cgccgactac gacgacgacg gcctcacaga ccttttcgtg acgggctacg
     4441 gcggcaacgc gctctaccgc gccgcggggc cttgccgcta cgaggacgtg acggagcgcg
     4501 cgggcgtgcg cggcgcggga ttcgctacgg gcgccgcgtg ggcggattat gaccgcgacg
     4561 gagaccttga tctcttcgtc gcccgctacg tctcggttga cctctctaac ctgcccgagt
     4621 tcggaagctc gcccaagacc tgcacctacc gcggcatacg cgtgcaatgc ggcccgcgcg
     4681 gcctgcccgg cgagacagac ctcctctacc gtaaccgcgg cgacggcacg ttcgaggagg
     4741 cgtcggcgaa ggcgggcgtc gccgacgagc ggaagcacta cgggatgcag ccggccttcg
     4801 ccgactacga cgacgacggc tggcccgatc tcttcgtcgc caacgacgcc acctacaact
     4861 acctctaccg caacaaccgc gacggcacgt tcagggaggt cggcgcggtg ctcggcgtgg
     4921 cctacggcga gtcggggagc gagcaggggt ctatgggcgc gacgtggggc gacttcgacc
     4981 tggacggccg cctcgacctc ttcgtgagca acttcgaggg cgagccgaac gcgctctacc
     5041 gcaacctcgg cacggcgggc ttcgccgacg tgacgctcac atcgcgcata ggccagccga
     5101 gcctccctta cgtcggctgg gggacggcct tcgtggattt cgacaacgac gggttggagg
     5161 atttgctggt ggcgaacggc cacgtctatc cgcagattga tctggcgaag ggcaggtacg
     5221 agaccggcta ccgccagcac ttcctgctgt tccgcaacgc gggcggcggc cgcttcgacg
     5281 aggtgtcggg atcggcgggc ctgcgcgcgc tgccgatgct ctcgcgccgc ggcgcggcct
     5341 tcggcgacat aaacgacgac gggctcgttg acgccgtcgt gataaatctg ggcgagccgc
     5401 cgacgctcct gctaaacacc acgcagaccg agaacgagag cgtcaccgtc cgcctcgcga
     5461 gggcgaaggg caaccgcgcc gccttgggcg cgcgcgtcac gctgcgcacg tcgaagcgcc
     5521 tgatgacgcg cgaggcgcag gccggcgcga gctacctctc gcagaacgac gcgcgccttc
     5581 acttcggtct ggggcgcggc gaaaagatag agcgcgtgga ggtgcgctgg ccgggcggtg
     5641 agaccgaggc ggtctcgggc gtggagcccg gccgggcggt gactgtcacg caaggcaagg
     5701 gcttgacggc ctcgctccct tacaggccgc ggcccgcgct cacttcgcgg ggggcggcga
     5761 cgcggcggcc ctgacgtgcc tgttccactc ggccggcgtc atcgcgccga gccgctctaa
     5821 ttcggacgcg gccgcgacga gctgccgcac ggcgccgacg acggcgagct cgacggccgc
     5881 cttcggcttc gcggcctgct caagggcggc gagccgcgcg tcgcgccact cgggcggcgc
     5941 cgccaccccg cgcgaaaggt acgagagcgc ttccaggccg gccgcgccga gcgccgacaa
     6001 gtcgtcggcg agcgggcgcg cctcgtggag cgcgggcgag ccgtccatga cggcctcaag
     6061 ctccgaggcc gcgtcgcgcc acgcggacag ctcgcggcga agctcctcag agcgcgactc
     6121 gaagcgcggg gcgtcggc
//
LOCUS       DASPKR010000240         6435 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1582152, whole genome shotgun sequence.
ACCESSION   DASPKR010000240 DASPKR010000000
VERSION     DASPKR010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6435)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6435
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1582152"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3506
                     /locus_tag="VD968_06595"
     CDS             <1..3506
                     /locus_tag="VD968_06595"
                     /EC_number="3.2.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004339 - glucan 1,4-alpha-glucosidase
                     activity [Evidence IEA];
                     GO_process: GO:0009251 - glucan catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glucan 1,4-alpha-glucosidase"
                     /protein_id="HYE14092.1"
                     /translation="MKAKPSTRPLLLSLILLLPFAAPTRTQTQGQGNNLAPGAPGRDA
                     QWPSAGKEAVGTSNTLESKVWFTLRGGVMDEVYYPTVDIANSQVLQFFLATEGGSKVE
                     TEAEGTTHRIEVLDPQALTFRQVNTAKSGAWAITKTYVTDPERSSVLMDVDFRWTAPG
                     PCRCALYLYYDPSLNNSGMHDSAWTDGDWLVASDADKASALTASVGLRDETNGYLGTS
                     DGLTRLRAGRLTPFARAADGNVVQVARVNLPVIAARRRERFNVILSFGREPAEAVRNG
                     QATLRKGFEAARAEYEQGWREYVGSLRRVEPKYQRQFEMAAMVLKAHEDKTYRGAMIA
                     SLSVPWGGGASANEPVVGGYHLVWSRDLYQVATAFHALGDKASADRALDYLFRIQQKP
                     DGSFPQNSWLDGRPFWGSLQLDEVAYPLVLAWQLGRTDNETWVKHVRPAADFIVKTGP
                     WTPQERWEEESGYSPSTIAAEIAGLVCAAEIARRNGDDASAAIYTAAADDWARNVEAW
                     TATTTGPYGDRNYYLRVTENDDPNDGEPRELNNGAGTFDEREVVDAGFLELVRLGIKP
                     PQDPLVAKSLAVVDRLIRVETPNGASFYRYNHDGYGEMDDGRPWNWDGKYTGKGRLWA
                     LLAGERGQYELARGQRGDAARRLDAMLGFANAGLMIPEQVWDKTESPRPDLKFGEGTG
                     SATPLAWSMAQFIRLAANLQEGRNLDTPDIVEARYVKRPIPARANADFFFPADGALRR
                     MEVGKSFRVTGSVREGARAFALFDDERRELRPDSRGRVEFDVPVRQGEFAVAVGVVSP
                     TGATFFRRLRARGLTAEEIQKAEHQELKPELIKRLKAARVSPLVEGGEAIFIYRGTAK
                     SVQVVGDFTEWAPASLNFRDVPGGGVKFVRVRFPKGARAEYKLIADGEWLLDPLNPNR
                     NDNGVGGENSFFVMPEYRGAQSASNGLRGRIERLEVPGDARRKVQVYLPPGYAEQPGR
                     RFPVLYMQDGSQFIELGRAAEIADRLIAGNKVEPFIVVFIDPIERMKEYWANDAYADW
                     MARTLVPLVDSRYRTRAEREGRALLGASLGGVTSIWAALRHPDVFARVGAHSPSFQID
                     EERVIGALAGLDEAARAARPFRFYIDSGLLEPVFDRSRRVQVMLAAKGYPVTYRETPS
                     GHNYTTWRDRLEDAYMALWAN"
     gene            complement(3617..3688)
                     /locus_tag="VD968_06600"
     tRNA            complement(3617..3688)
                     /locus_tag="VD968_06600"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3654..3656),aa:Val,seq:cac)
     gene            complement(3786..4274)
                     /locus_tag="VD968_06605"
     CDS             complement(3786..4274)
                     /locus_tag="VD968_06605"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HYE14093.1"
                     /translation="MKIQKSTRRQRGFSLVELMIVISIIGILVAIGIPAWQSSVRSTN
                     EAAALSHLQRIATAQVTFYNTKNRSGYGTFDQLSSGGYLDARFTSDTPVVDGYVFKMT
                     LTPKSTNQPPGFGVNADPQKATGLTATGSQFFYIGSDSGGTRANPERPATAEDPPVGG
                     GQ"
     gene            4518..5507
                     /locus_tag="VD968_06610"
     CDS             4518..5507
                     /locus_tag="VD968_06610"
                     /inference="COORDINATES: protein motif:HMM:NF019346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HYE14094.1"
                     /translation="MRDFETASRGDVLSAAEAAGRVARLEGEVERVIKGKPEAVRLAV
                     VALLAGGHLLVEDVPGVGKTTLAQALARGLNCTFNRIQFTSDLLPSDVIGLSVYNERS
                     GGFEFKHGPIFANVVLADEINRTTPKTQSALLEAMAEGSVTVEGTTYRLRAPFMVVAT
                     QNPVEHHGTYPLPESQVDRFMLRLRMGYPSFEVEKEILRDRERGDPLDAVEPAMSGED
                     VLELRRAAAAVSVDDALVDYLMRIVATTRDSETLDLGVSPRGTLALFRAAQALALTEG
                     RDYCLPDDIKRLILPVFAHRLVVNSRFSSSLHRRSEEAEEVLREIMKTVSVPL"
     gene            5539..5868
                     /locus_tag="VD968_06615"
     CDS             5539..5868
                     /locus_tag="VD968_06615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14095.1"
                     /translation="MRLKLLSSALMCLLAACGGDGGGKQITLRLMRDGAALAGEEVEV
                     WPEHPPGGRLKRKADAEGRVRVPASLAGVRVLVGTACGPKGTCEEFSRPHRLDADELT
                     FDVRDFR"
     gene            5886..>6435
                     /locus_tag="VD968_06620"
     CDS             5886..>6435
                     /locus_tag="VD968_06620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14096.1"
                     /translation="MGSFKRWRKTVLGSAVVLCGVSAAVITVIARRAGDWELARLGAI
                     ASLLFAALIVIFVVPPLARSARAEAARLDLPFQLTAGGVVFLGIYAVVTFAAWNTGNN
                     LLFLIFSVLTSTLFVAWAAARASLRDLVVSARFPDHIFAGDPAPVIVTVHNTKRVLPS
                     FSVMVEARSRDEAGASRARRFGA"
BASE COUNT         1037 a         2176 c         2182 g         1040 t
ORIGIN      
        1 tgatgaaagc aaagccgtcc acgaggccgc tactcctctc tctaattctc ctgctaccgt
       61 tcgccgcccc gacgcgcact cagacgcagg ggcagggcaa caacctcgcg cccggagcgc
      121 cgggccgcga cgcccagtgg ccgagcgccg gcaaggaggc cgtcggcacc tcgaacacgc
      181 tcgaatcgaa ggtctggttc acgctgcgcg gcggcgtgat ggacgaggtc tattacccca
      241 cggttgacat tgcgaactca caggtcttgc aattcttcct cgctactgaa ggcggcagta
      301 aagtcgagac agaggccgag ggtacgaccc accgcatcga ggttttagac ccgcaggcgc
      361 taaccttccg ccaagtcaac acggcgaagt ccggcgcgtg ggcgatcacg aagacttacg
      421 tgaccgaccc cgagcgcagc agcgtcctca tggacgttga cttccgttgg actgcccccg
      481 gcccttgccg ttgcgcgctc tacctttact acgacccttc gctcaacaac agcgggatgc
      541 acgactccgc gtggacggac ggcgattggc ttgtcgcttc tgacgcggac aaagcctcgg
      601 ccctcaccgc gagcgtgggc ctgcgcgatg agacgaacgg ctacctcggc acgagcgacg
      661 ggctgacgcg actgcgggcg ggccgactca cgcctttcgc ccgcgccgct gatggcaacg
      721 tcgtccaagt cgcgcgggtc aacctcccgg tcatcgccgc ccgccgccgc gaacgtttca
      781 acgtcatcct cagcttcggc cgcgagcctg ccgaggccgt taggaacggg caggcgactt
      841 tgaggaaggg cttcgaggcg gcgcgcgccg agtacgagca gggctggcgc gagtacgtcg
      901 ggtcgctacg gcgcgtcgag ccgaaatatc agcgccagtt cgagatggcc gccatggtct
      961 tgaaggcgca cgaggacaag acctaccgcg gcgcgatgat agcctcgctc tcggtgccgt
     1021 ggggcggcgg cgccagcgca aacgagcccg tcgtcggcgg ctaccacctg gtctggtcgc
     1081 gcgacctcta ccaggtcgcg acggcgttcc acgcgctggg cgacaaggct tcggcagacc
     1141 gcgcgctcga ctacctcttc cggatccagc agaagccgga cgggagcttc ccgcagaact
     1201 cctggctcga cggccggccc ttctggggct ccttgcagtt ggacgaggtc gcctacccgc
     1261 tcgtcctggc gtggcagctc ggccgaacgg acaacgagac ctgggtcaag cacgtgcgcc
     1321 cggccgccga cttcatcgtt aagacggggc cgtggactcc gcaggagcgc tgggaggagg
     1381 agtcgggtta ctcgccctcg accatcgcgg ccgagatagc gggccttgtg tgcgcggccg
     1441 agatcgcgcg ccgcaacggc gacgacgcct ccgccgcaat ctacacggcc gcggccgacg
     1501 actgggcccg caacgtagag gcgtggacgg cgacgaccac gggcccctac ggcgacagga
     1561 actactacct ccgagtcacg gagaacgacg acccgaacga cggcgagccc cgcgagctta
     1621 acaacggcgc cggcaccttc gacgagcgcg aggtcgttga cgcgggcttc cttgagcttg
     1681 ttcgtctcgg cataaagccc ccgcaagacc cgctggttgc gaagtcgctg gccgtcgttg
     1741 acaggctcat ccgcgtcgag acgcccaacg gcgcttcctt ctaccgctac aaccacgacg
     1801 gctacggcga gatggacgac ggccgcccct ggaactggga cgggaagtac acgggcaagg
     1861 ggcgcctttg ggccttgcta gcgggcgagc gcgggcagta cgagcttgcg cgcggccaaa
     1921 ggggcgacgc cgcacgccgc ctcgacgcca tgctcggctt cgcgaacgcc ggccttatga
     1981 tccccgagca ggtctgggac aagacggaga gcccgcggcc cgatttgaag ttcggcgaag
     2041 gcaccggctc ggccacgccg ctcgcgtggt caatggcgca gttcatacgc ctcgccgcca
     2101 accttcagga gggccgaaac ctcgacacgc ccgacatcgt cgaggcgcgc tacgtcaaac
     2161 gccccatccc cgcgcgcgca aacgcagact tcttcttccc cgccgacggg gcgctgcggc
     2221 gcatggaggt ggggaagagc ttccgcgtga caggctccgt ccgtgagggc gcgcgcgcct
     2281 tcgccctctt cgacgacgag aggcgggagc ttcggcccga ctcgcgcggc cgcgtcgagt
     2341 ttgatgtgcc ggtcaggcag ggcgagttcg ccgtcgcggt cggcgtagtc tccccgacgg
     2401 gcgcgacctt cttccggcgg ttgcgcgcgc gcggcctcac ggccgaggag attcagaagg
     2461 cggagcatca ggagttaaag cccgagctca tcaaacgttt gaaggcggcg cgcgtctcgc
     2521 cgttggtgga aggcggggag gcgattttta tttaccgcgg gacggcgaag agcgtccagg
     2581 tggtcggcga cttcactgag tgggcgcccg cctcgctcaa cttcagagac gtgccgggcg
     2641 gcggtgtcaa gttcgtgcgc gtgcgattcc cgaagggcgc gcgcgcagag tacaagctca
     2701 tagccgacgg cgagtggctc ctcgaccccc tgaacccgaa caggaacgac aacggcgtcg
     2761 gcggcgagaa ctccttcttc gtgatgccgg agtacagggg ggcgcagtct gcctcgaacg
     2821 gcctgcgcgg gcgcatcgag cggctcgaag tgccgggcga cgcgcggcgc aaagtccagg
     2881 tctatcttcc gcccggctac gccgagcagc cggggcggcg cttccccgtg ctctacatgc
     2941 aggacggctc gcagttcata gagctgggcc gcgccgcaga gatagccgac cgcctcatcg
     3001 ctgggaacaa ggtcgagccc ttcatcgtcg tcttcataga cccgatcgag cgcatgaagg
     3061 agtactgggc caacgacgcc tacgccgact ggatggcgcg aacgctcgtc cccctggttg
     3121 actcgcgcta ccgcacgcgc gccgagcgcg aaggccgcgc cctgctcggc gcgagcctcg
     3181 gcggagtcac ctccatatgg gccgcgctcc gccaccccga cgtgttcgcc cgcgtcggcg
     3241 cgcactctcc ttcgttccag atagacgagg agcgcgtaat aggcgcgctc gccgggctcg
     3301 acgaggcggc ccgcgccgcg cgccccttcc gcttttacat agactcgggc ctgctcgagc
     3361 ccgtcttcga ccgcagccgc cgcgtgcagg tcatgctcgc cgcgaaaggc taccccgtca
     3421 cctaccgcga gacgccctcc ggccacaact acacgacctg gcgcgaccgc ctcgaagacg
     3481 cctacatggc cctctgggcc aactaatcaa gcgcgtgtga cgaacgttaa agtttaacgg
     3541 gttcaggcag gtgtgaaggg cgaacgggcg gtcgcaaggt gcgcgcgacc gcccgttttt
     3601 attgaagggt tcggaatgcc cgctagtaga ttcgaactac tgaccccacg cgtgtgaagc
     3661 gtgtgctcta ccgctgagct aagcgggcgg cttggaattt caaaggagcg gcatcctagc
     3721 aaggcgccgg cgggagcgtc aagcgtgtgg cgcgcgccgg acgcctccga agaggggggg
     3781 ccgccctact ggccgccgcc gacgggcggg tcttcagccg tggcggggcg ctcggggttg
     3841 gcgcgtgtgc cgccggagtc ggagccgatg tagaagaact ggctgcccgt cgccgtcagg
     3901 cccgtggcct tctgcgggtc ggcgttgacg ccgaagccgg gcggctggtt cgttgacttg
     3961 ggcgtgagcg tcatcttgaa gacgtagccg tcaacgaccg gcgtgtcgct cgtgaagcgc
     4021 gcgtcgaggt agccgcccga ggagagttgg tcgaacgtgc cgtagccgct gcggttcttt
     4081 gtgttgtaga aggtcacctg cgcggtggct atacgctgca ggtggctgag ggccgcggcc
     4141 tcgttcgtcg agcgcacgct cgactgccag gccgggatgc cgatggcgac gagtattccg
     4201 atgatcgaga tgacgatcat cagctcgacg agcgagaatc cgcgctgccg gcgcgtgctc
     4261 ttttgtatct tcatcatcaa atacctctca cgaatcagta cacgaaggag ggccgtcggg
     4321 gttccacaaa gcggcgcgtg gcgggtgtgc ggcagtcgtg gcgtttacgt ccctgcgggg
     4381 cagaatttta ctacacggcg gcctccaagt cacatgaggg gctaggggct aaagaccatc
     4441 ggccagcgaa gaagttgttt ctgaccggcc cctagtctct agcctctagc ccccggttcc
     4501 ctttagaatg gtggcgcatg agggatttcg agacggcgag caggggggac gtgctttcgg
     4561 cggcggaggc ggccgggcgc gtagcccggc ttgagggcga ggtcgagcgc gtcataaagg
     4621 gcaagcccga ggccgtgcgg ctcgcagtcg tggcgctgct cgcgggcggc cacctcctcg
     4681 tcgaggacgt gcccggggtt ggcaagacca cgctcgcgca ggcgctcgcc cgcggcctca
     4741 actgcacctt caaccgcatt cagttcacct cagacctgct gccgtcggac gtgatcggcc
     4801 tctccgtcta taacgagcgc tcgggcggct tcgagttcaa gcacggcccc atcttcgcca
     4861 acgtcgtgct cgcggacgag atcaaccgca cgacgccgaa gacgcagtcg gccctgctcg
     4921 aagcgatggc cgaggggagc gtgaccgtcg aggggacgac ctaccgcctg cgcgcgccct
     4981 tcatggtcgt cgccacgcag aaccccgtcg agcaccacgg cacgtacccg ctgcccgagt
     5041 cgcaggttga ccgcttcatg ctgcggttga ggatgggcta cccgtccttc gaggtcgaga
     5101 aggagatact gcgcgaccgc gagcggggcg acccgttgga cgcggtcgag ccggcgatgt
     5161 cgggcgagga cgttcttgag cttcggcgcg cggcggcggc cgtctccgtt gacgacgcgc
     5221 tggttgacta ccttatgcgc atcgtcgcga cgacgcgcga ctccgagacg ctggacttgg
     5281 gcgtgagccc gcgcggcacg ctcgcgctat tccgcgcggc gcaggcgctc gcgctcacgg
     5341 aggggcgcga ctactgcctg cccgacgaca tcaagcggct catcctcccc gtcttcgcgc
     5401 accgcctcgt cgtcaactcg cgcttctcct cctcgctcca ccgccgcagc gaggaggccg
     5461 aggaggttct gcgcgagatc atgaagacag tcagcgtccc gctctgaccg ccgaggaatt
     5521 ccctaaaccc cgacaaagat gaggctcaag cttctgtcat cagccctcat gtgcctgctc
     5581 gcggcgtgcg gcggcgacgg aggtggtaag cagataacgt tgcggctcat gcgcgacggg
     5641 gcggcgctcg cgggcgagga ggtggaggtt tggcccgagc acccgccggg cggccgtctg
     5701 aagcggaagg cggacgcgga agggcgcgtg cgcgtccccg ccagcctcgc gggcgtgcgc
     5761 gtgctcgtcg gcacggcctg cggccccaaa ggcacttgcg aagagttctc gcgcccgcac
     5821 aggctcgacg ccgacgagct gacgttcgac gttagggact tccgctgagg ttcggcaggt
     5881 tcgtcgtggg gagcttcaag cgatggcgta aaacggttct gggctcggcc gtcgtgctct
     5941 gcggcgtgag cgcggccgtc atcaccgtaa tcgcgcggcg cgcgggcgac tgggagcttg
     6001 cgcgcctcgg cgcgatagcg tcgctgcttt tcgccgctct catcgtcatc ttcgtcgtgc
     6061 cgccgctcgc gcgctcggcg cgcgccgagg ccgcccgcct cgacctgccg ttccaactga
     6121 ctgcgggcgg cgtcgtcttc ctcggcatct acgccgtcgt caccttcgcc gcctggaaca
     6181 cgggcaacaa cctcctcttc ctaatcttct cggtgctcac ctcgacgctc ttcgtcgcgt
     6241 gggcggcggc gcgggcgtct ctgcgcgacc tcgtagtctc ggcgcgcttt cccgaccaca
     6301 tcttcgcggg cgaccccgcg cccgtcatcg tcaccgtgca caacacgaag cgcgtgctgc
     6361 cctccttctc cgtcatggtc gaggcgcgca gccgcgacga agccggcgcg agccgcgcgc
     6421 gccgcttcgg ggcgt
//
LOCUS       DASPKR010000241         4314 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_807433, whole genome shotgun sequence.
ACCESSION   DASPKR010000241 DASPKR010000000
VERSION     DASPKR010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4314)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4314
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_807433"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            471..689
                     /locus_tag="VD968_06625"
     CDS             471..689
                     /locus_tag="VD968_06625"
                     /inference="COORDINATES: protein motif:HMM:NF040111.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amphi-Trp domain-containing protein"
                     /protein_id="HYE14097.1"
                     /translation="MGNEKDVEKSYATKDVAAKLRRLADALEAEKTFEIQIAGERIYV
                     PPYATIEFEYQRDGDEEEVEIELKWKRQ"
     gene            714..1091
                     /locus_tag="VD968_06630"
     CDS             714..1091
                     /locus_tag="VD968_06630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14098.1"
                     /translation="MGGFCEEVGGLIGDELRVIGATPIQVTHSGSGFDEKEVCFFSAA
                     DKIIAVSYSPQDGATCFITGAGQAELSRHETWDSLWHALGMDNDTDTLEGMTAYLEMF
                     PEGHEEFIKFIGTCLVKYFGRTA"
     gene            complement(1153..3564)
                     /locus_tag="VD968_06635"
     CDS             complement(1153..3564)
                     /locus_tag="VD968_06635"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HYE14099.1"
                     /translation="MMNITPKLISNCAALLLLLLASAASTARAQESLSAGGKEVYDAV
                     KAASLTGGVADVKGLVLKRDRAEMTFDGTFYFAAPVAGRVTGAVFIGSGTFRADVPPS
                     EFEKENVRRMIGADSVESDFKTAVLRFTDDTFELIGQGRRDSPADARAQKLINEYDSR
                     ALKETGANIPARLALSLLNGERPGFFYAAFDGGRRDRFNLLLDYQNRVPVANFALNAG
                     EKGLIYSYKGVLYGNDIWMAFYSLEDYQRRIVSYSDLNDLIDVTHYDMSVDTRDPGSR
                     IKVGARLKALARQPGVRAVSFVVGESLPELDSMRQKKQMRLKSVRSGGAEVPAVQEEW
                     EGGLTVFLPAALQAGQSLELEFVLEGDFMRSNPYLNDCFYPASNTDWYPRHGYLDRST
                     YELSFRHRKNRRVASIGTRISEEPDPEEKDASVTKYSMRHPVWGAAFAVGPFERHTQT
                     VKWEKGGDPTPLEFNSIPGNYGAVKEDFILAELDNSIRYFSLLFGKYPYPNFNAGFHP
                     FGFGQGLPSLVMIPNADRANKHTYSFIAHETAHQWWGNIVAWRSYRDQWLSEGFAEYS
                     GALYTGIRESTDARNDLINDMRRSLREPPVTTMGIGSGRLVDVGPIILGHRLSTSKTY
                     GAYQALIYSKGALVLRMLHFLMTDPSNGNDEAFFKMMGDFVERHRDGFASTDDFRAVA
                     NEHFARTPIAQKYRLKDLNWFFKQWVYETGLPVYKLEYRLQPQEGGGALLTGTVTQEK
                     VPEGWFMPIPLFLTFGEKQWASGTVHAYGPSTPVEIKLPRMPKKVELDPHHWVLSEGT
                     STKSR"
     gene            complement(3729..>4314)
                     /locus_tag="VD968_06640"
     CDS             complement(3729..>4314)
                     /locus_tag="VD968_06640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14100.1"
                     /translation="YLSAELAQRVANDVRTLCAALGYDINTVEFAIKGDVPYAIDFMN
                     PAPDAELASVGPFYHNWLTRAVTDLVFRRLSEPQAAPTYRWDALLSPASASAVAAPLA
                     AAASAAGASVDAVFPQSVRELPSEVASTVTELVGQATGIVSGIVETVTDAVSGAPEEK
                     KTVRRTRAAPASKKAPAKKGSATRTKKTPTPPEV"
BASE COUNT          774 a         1257 c         1478 g          805 t
ORIGIN      
        1 ttgaccaaaa ttagcacaac tcaggtacta tcaaaagtgg gaaaagtcca acaaaaacgc
       61 acacagagta actcagtaat actaagaaaa agaggctttt atagactgaa aatcacggtg
      121 tcggcggttc gattccgtcc ctggccatca acaaaatcaa acagttacgg gcagtcaaag
      181 aggctgcccg tttcgctttg tgcgacttgt agcgcgccgc ggccgtatga atctcagcac
      241 attcgggatc atagtcacga cttgacgggg tgccggcccc cggatggaat atactttcgc
      301 cttcccggcc agctctgagc cgggcatgct catgtctcta ctggaggcaa tggcgccggg
      361 tgagaagccg tcggtgatag accccgcgca cggcgattgc tctcttgagg caaggcgcaa
      421 cggggagggt tctaaaataa ggcgcgcctg atactcacag gaggtaagct atgggaaatg
      481 aaaaggacgt ggagaaatcc tacgcgacca aggatgtagc cgctaagctg aggcgtctgg
      541 cagacgccct ggaggcggag aagaccttcg agatacagat cgccggcgag cgcatctatg
      601 tcccgcctta cgcgacgatc gagttcgagt accagcgcga tggcgacgag gaagaggtgg
      661 agattgagct gaagtggaag agacagtgag gcgggcgcga aaggcgatta cgcatgggcg
      721 gcttctgcga agaggttgga gggctgatcg gggacgagtt gcgtgttata ggcgcgacac
      781 ccatccaggt cacacactcg ggcagcgggt ttgatgaaaa ggaggtctgc tttttctccg
      841 cggccgacaa aatcatagcc gtaagctatt ccccgcaaga cggcgccacc tgttttatca
      901 ctggcgccgg gcaggcggag ttgtcgcggc acgaaacctg ggactctttg tggcacgccc
      961 tcggaatgga taacgatact gatacgctcg aagggatgac ggcgtacctt gagatgttcc
     1021 ccgaggggca tgaggaattc atcaagttta ttggaacctg cctggtgaaa tacttcggca
     1081 ggacggcgtg aggcggcgca gtttaaccga gtgagaacgg gggcagtcaa agcgactgcc
     1141 cccgttctca cgtcagcggg acttagtcga ggtgccttcg gagagcaccc agtggtgcgg
     1201 gtcgagctcg accttcttgg gcatgcgcgg gagttttatc tcgacgggcg tggacgggcc
     1261 gtaggcgtgg acggtgccgc tggcccactg cttctcgccg aaggtcagga acagcggtat
     1321 gggcatgaac cagccctcgg ggactttctc ctgcgtgacc gtgccggtca ggagggctcc
     1381 gccgccctcc tgcggttgca gccggtactc gagcttatag acgggcagcc ccgtctcata
     1441 gacccactgc ttgaagaacc agttgaggtc tttgagcctg tacttctgcg cgatgggcgt
     1501 gcgcgcgaag tgctcgttgg cgacggcgcg gaagtcgtcg gtggaggcga agccgtcgcg
     1561 gtggcgctcg acgaagtcgc ccatcatctt gaagaacgcc tcgtcgttgc cgttcgacgg
     1621 gtcggtcatc aggaagtgga gcatgcggag cacgagcgcg cccttgctgt agatgagggc
     1681 ctggtaggcc ccgtaggtct tgctggtgct cagccggtgg cccagtatta taggcccgac
     1741 gtccacgagg cggccgctgc cgatgcccat agtcgtgacg ggtggctcgc ggagcgagcg
     1801 ccgcatgtcg ttgatgaggt cgttgcgcgc gtcagtgctt tcgcggatgc cggtgtagag
     1861 cgcgccggaa tactcggcga agccctcgct cagccattgg tcgcggtagg agcgccaggc
     1921 gactatgttg ccccaccact ggtgcgcggt ttcgtgcgcg atgaaagagt atgtgtgctt
     1981 gttcgccctg tcggcgttgg ggatcatgac gaggctgggg agcccctgcc cgaagccgaa
     2041 cgggtggaag cccgcgttga agttcgggta cgggtacttg ccgaagagca ggctgaagta
     2101 gcggattgag ttgtccagct ccgcgagtat gaagtcctcc ttgacggcgc cgtagttgcc
     2161 tgggatcgag ttgaactcga gcggcgtggg gtcgccgccc ttctcccact tgacggtctg
     2221 cgtgtggcgc tcgaaggggc cgacggcgaa tgcggcgccc cagacggggt ggcgcatgct
     2281 gtacttcgtg acggacgcgt ccttctcttc cgggtcgggc tcctcggaga tgcgcgtgcc
     2341 gatgctcgct acccgtcggt tcttgcggtg gcggaagctc agttcgtagg tcgagcgatc
     2401 caggtagccg tggcgcgggt accagtctgt gttcgaggcc gggtagaagc agtcgttgag
     2461 gtaggggttg ctccgcatga agtcgccttc gagcacgaac tcaagctcca ggctctgccc
     2521 cgcctgcaac gccgccggca ggaagaccgt gaggccgccc tcccactcct cctgcacggc
     2581 cggcacttcc gcgccgcccg accgcacgga cttcagccgc atctgcttct tctgcctcat
     2641 gctatccaac tccgggagcg actcgcccac gacgaacgag acggcgcgca cgcccggctg
     2701 gcgcgcgagc gccttcaggc gcgcgcccac ctttatcctg ctgccggggt cgcgcgtgtc
     2761 aacgctcatg tcgtagtgcg tcacgtcaat caggtcgttg aggtcggagt aggagacaat
     2821 ccgccgctgg tagtcttcga gcgagtagaa ggccatccag atgtcgttgc cgtagagcac
     2881 gcccttgtag gagtagatga ggcccttctc gccggcgttg agggcgaagt tggcgacggg
     2941 gacgcggttc tggtagtcga gcagaaggtt gaagcggtcg cgccgcccgc cgtcgaacgc
     3001 ggcgtagaag aagccgggcc gctcgccgtt taagagcgag agggcgagcc gcgccgggat
     3061 gttcgcgccc gtttccttca gggcgcgcga atcatactcg ttgatgagct tctgggcgcg
     3121 cgcgtcggcc ggagagtcgc gccgtccctg cccgattagc tcgaacgtgt cgtcggtgaa
     3181 ccggagcacg gcggtcttga agtccgactc gaccgagtcg gctcctatca tgcggcggac
     3241 gttctccttc tcgaactcgc tgggcggcac gtcggcgcgg aaagtcccgg agccgatgaa
     3301 gacggcgccc gtgacgcggc ccgcgaccgg ggcggcgaag tagaacgtgc cgtcgaaggt
     3361 catctcggcg cggtcgcgct tgagcacgag ccctttcacg tccgccacgc cgcccgtgag
     3421 cgaggcggcc tttacggcgt catagacttc cttgcctccg gccgagaggc tctcctgcgc
     3481 gcgggcggtc gaggccgccg aagcgagcag gaggaggagc agcgcggcgc agttgctgat
     3541 gagtttgggg gttatgttca tcattatcgc ttaccttgtt atatagagtc gtaaaggtgt
     3601 gagaggcgcg gcggggagcc cgcgcgtggc tcagtcaagg actggatttt acacaaaaaa
     3661 aggggcgggc gcggccgcgc ccgccctcaa agcaatttct attttaggcg cccggcagcg
     3721 ccgacgcctt agacttccgg cggcgtgggc gtcttcttgg tgcgcgtcgc ggagcctttc
     3781 ttagccggcg ccttcttcga ggcgggggcc gcccgcgtgc gcctcacggt ttttttttct
     3841 tcgggcgcgc ccgagaccgc gtcggtcacg gtctcaacaa tccccgaaac gatccccgtt
     3901 gcctgcccga ctagctcggt cacggtcgaa gcgacctcgg acggcagctc gcgcacagac
     3961 tgcgggaaca cggcgtcaac cgacgctccc gcggccgaag ctgcggcggc cagaggcgcc
     4021 gccaccgcgg aggccgacgc cgggctcagg agcgcgtccc accggtaggt cggcgccgcc
     4081 tgcggctcgg agaggcggcg gaagacgagg tcggtgacgg cccttgtcag ccagttgtgg
     4141 tagaaggggc cgaccgacgc gagctcggcg tccggcgcgg ggttcataaa gtctatcgcg
     4201 taaggcacgt cgcccttgat ggcgaactct acggtgttga tgtcgtagcc gagcgccgcg
     4261 cagagcgtgc gcacgtcgtt cgcgaccctc tgcgccagct cggccgagag gtag
//
LOCUS       DASPKR010000242         6789 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1710964, whole genome shotgun sequence.
ACCESSION   DASPKR010000242 DASPKR010000000
VERSION     DASPKR010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6789)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6789
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1710964"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1152
                     /locus_tag="VD968_06645"
     CDS             <1..1152
                     /locus_tag="VD968_06645"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HYE14101.1"
                     /translation="LAWTENAGGVSALRLRDLQSGSGLRRTLDAGTAGLPEGVIGALV
                     WAASAPRLAIRLSAPQVPGDIWLFDGSRPASRGGAARSAGPRVRDSLDDLRGRLTRLT
                     DSSLAGLDPLSFVAPQAVSFKSHDGETIYGLLYMPRGASAARRPPVVLSVHGGPTGQA
                     RPTFSGVQQYLLARGYAILDLNFRGSTGYGKRFARLDNKRQRPNAVKDMGAAVDCLAK
                     SGRPLDASKVAVMGGSYGGYMTYAALAMLPEKFAAGVSFVGVSNWVTALEGASPSLKA
                     SDREEYGNVDDPADREFFKEISPITHVAAVRAPLLVSHGANDPRDPVTESDQFVRAIR
                     ERGGVVEYLRWPDEGHSIRKLQNRVIAYRRVARFLARTLGPGAADCEAQ"
     gene            1149..1940
                     /locus_tag="VD968_06650"
     CDS             1149..1940
                     /locus_tag="VD968_06650"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE14102.1"
                     /translation="MTEPGRTALVTGASGGIGEELARLFAADSYELVLVARSRDKLEG
                     LAAELSAKSGRPAHALPADLARAGAPREIFDGLKARGVGVDVLVNNAGFGGYGPFAEG
                     DLSAQLGMIQVNVAALTHLTRLFLPAMLERRSGHVMNVASTAAFQPGPLMAVYYATKA
                     YVLSFSEAIANELEGTGVTVSALCPGPTETGFVAAAGMSESKLFDRGAMSARAVAEAG
                     YRGMLEGKTVVIPGFRNALLARTVGFMPRKLVTKVVRGIQERRDS"
     gene            1982..2908
                     /locus_tag="VD968_06655"
     CDS             1982..2908
                     /locus_tag="VD968_06655"
                     /inference="COORDINATES: protein motif:HMM:NF021850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative capsular polysaccharide synthesis
                     family protein"
                     /protein_id="HYE14103.1"
                     /translation="MPGALQKLSRLTRYPAAAAVALPFLPKPARKALRRFHFRRSIRR
                     SLGGPAPPVLVYATPKVASTAVTHALMPVVGQAVFHVHMIAPENIRALREAMRRRGLT
                     RARHDMNGLEDLAHALREELIKPRRRARVVSLVREPVARNISFYFQTLDVLWKTERAH
                     ERFPVERLLAEFHDRFVHERGIDWFDDEFKRVLGVDVYERPFPRELGYQRIDSGPYEI
                     LLMRHDLDDRLKEKCLEELVGVSGVRLTPRNVGAEKVYREAYGEFLARVRLPEDYVER
                     LLGSKYARHFFTTEELERARDRWLGRRAPAFR"
     gene            2905..4245
                     /locus_tag="VD968_06660"
     CDS             2905..4245
                     /locus_tag="VD968_06660"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HYE14104.1"
                     /translation="MRNGNHKVPGPPGNPFFGTLVRESRRDPLNFMTRLAREYGDLCS
                     FRVGFERVFFVNHPDYVRDVLVKHYDNFLKGAGRPRAKHFLGEGLLLSEGELHRRQRR
                     LAQPGFHRERLAAYAEEMARCAEGCSARWRDGQELDVWPEMLRLTLAVVGRTLFSADV
                     ESDADEVGRAMKAATLRYRAFRLPLARLIERLPLPHVRRFHRGKQRLREVVLRIIEER
                     RRDGLDRGDLLSMLMLAGDDGGEMTPSQVWDEALTLFIAGYDTTATALMWTWWLLSRH
                     PEAEARLHRELDSVLEGGRPARFEDLPRLAYTERVLAESMRLYPPTWRLVRRALTDFP
                     VGEHTIPAGSLVVVCQYAMHRDPRFFPDPERFDPDRFMPEARTARPQFAYFPFGGGPR
                     RCLGESFAMMEGVLLLASLARRWRLRAAPGHAVEPVPEHLLRARHGVRMVFERR"
     gene            complement(4258..5424)
                     /locus_tag="VD968_06665"
     CDS             complement(4258..5424)
                     /locus_tag="VD968_06665"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE14105.1"
                     /translation="MGGLRVLITNVRLDEWTGTELYVRDVARALLARGHSPVAYSPRL
                     GALAAEMRRETIPVVEDLSRLSVAPDIIHGHHANETLTALLHFPDAPAVYFCHDWYFK
                     QDYPPAFPRVLRYVAVDAACREKLVSEHGVPAERVAVLTQFFDAEKFRPRSAPLPPRP
                     RRALVLCNYTKESEHLAAAREACARARVELDVRGAGVGRPCERPEEILGDYDVVFAKG
                     RAALEAAAVGAAVVVYWWRRLGPLVTPGELERLRQENFGVRVMGPQLTPEEFGREVGR
                     ALELYDPAGAAEVSRRVRETSGRDATIAQLLEIYEDAIAEHEAAPEPDRAAEARAAAA
                     HLRRISLSFWEERSRVYNSTPFRLAERLLKTPLVGRLARPFARVAAGRPARRDG"
     gene            5570..>6789
                     /gene="hutU"
                     /locus_tag="VD968_06670"
     CDS             5570..>6789
                     /gene="hutU"
                     /locus_tag="VD968_06670"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: protein motif:HMM:TIGR01228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HYE14106.1"
                     /translation="MSENRTVRAPRGARLNCKGWQQEAALRCLMNNLDPEVAERPEDL
                     VVYGGRGKAARDWRSFEAIVRELTSLEADETLLVQSGKPVAVFRTHEHAPRVLIANSN
                     LVGAWATWEHFHELERRGLMMYGQMTAGSWIYIGTQGIVQGTFETFAAMAERHFGGTL
                     EGRLVVSGGMGGMGGAQPLAATMNGAAFLGIDVDRARIERRVRTGYCDRLALDLDEAL
                     RICEDAVEQKRAVSVGLVGNCAEVLPELVRRGVRVDAVTDQTSAHDPLNGYVPEGVTP
                     GEAEELRRSDPKSYVERSTASMARHVGAMLDLKRAGAVAFDYGNNIRKFASDAGCRDA
                     FEIPGFVPEYIRPLFCEGKGPFRWVALSGDPEDIRRTDDLALELFPEDRTLNRWLRLA
                     RDPGFCMCRSPKTRL"
BASE COUNT         1011 a         2421 c         2349 g         1008 t
ORIGIN      
        1 ctcgcgtgga cggagaacgc cggcggcgtc tccgccctcc ggctccgcga cctccagagc
       61 ggctcgggac tgcgccgcac gctcgacgcc ggcacggccg ggctgccgga gggcgtcatc
      121 ggcgcgctcg tctgggccgc ctccgccccg cgcctcgcca tccgcctgag cgcgccgcag
      181 gtgcccggcg acatctggct cttcgacggc tcgcgccccg cgtcgcgcgg cggggccgcg
      241 cgctccgccg gcccgcgcgt gcgcgactcg ctcgacgacc tgcgggggcg gctcacgcgc
      301 ctcacggact cttcgctcgc cggcctcgac cctttgagct tcgtcgcgcc gcaggccgtc
      361 tccttcaaga gccacgacgg cgagacgatt tacggcctgc tctacatgcc gcgcggggcg
      421 tcggcggcga ggcggccgcc cgtcgtgctc tcagtccacg gcggcccgac cgggcaggcg
      481 cggcccacgt tcagcggcgt gcagcaatac ctgctcgcgc gcggctacgc catactcgac
      541 ctgaacttcc gcggctctac ggggtacggc aagcgcttcg cgcgcctcga caacaagcgc
      601 cagcggccga atgcggtcaa ggacatgggc gccgccgttg actgtctcgc caagtccggc
      661 cgcccgttgg acgcctccaa ggtcgccgtg atgggcggct cctacggcgg ctacatgacc
      721 tacgcggcgc tcgcgatgct gccagagaag ttcgccgccg gggtgagctt cgtcggcgtc
      781 tcgaactggg tgacggcgct cgaaggcgcc tcgccctcgc tcaaggcgtc agaccgcgag
      841 gagtacggca acgttgacga ccccgccgac cgcgagttct tcaaggagat aagccccatc
      901 acgcacgtcg cggcggtgcg cgcgcccctg ctcgtctcgc acggcgccaa cgacccgcgc
      961 gaccccgtca cggagtcaga ccagttcgtg cgcgcaatac gcgagcgcgg gggcgtggtc
     1021 gagtatctgc gctggcccga cgagggccac agcatccgca agctccagaa ccgcgtcata
     1081 gcctaccgcc gtgtggcgcg cttcctcgcg cgcacgctcg ggcccggcgc ggccgactgc
     1141 gaggctcaat gaccgaaccg ggaaggacgg cgctcgtcac gggcgcgtcg ggcggcatag
     1201 gcgaggagct cgcgcgactg ttcgccgccg actcttacga gcttgtgctg gtcgcgcgca
     1261 gccgcgacaa gcttgagggc ctcgccgcgg agctttctgc gaagtcgggc cgccccgccc
     1321 acgcgctgcc cgcagacctc gcccgcgcgg gcgcgccgcg cgaaatcttc gacgggctga
     1381 aggctcgggg cgtgggcgtt gacgtgctcg tcaacaacgc gggcttcggc ggctacggcc
     1441 ccttcgccga aggagacctc tcggcgcagc tagggatgat tcaggtgaac gtcgccgccc
     1501 tgacgcacct gacgcgcctg ttcctgccgg cgatgcttga gcggcgctcg ggccacgtga
     1561 tgaacgtggc ctcgacggcc gcgttccagc cggggccgct catggccgtc tattacgcga
     1621 cgaaggctta cgtgctctcc ttctccgagg cgattgcgaa cgagctggaa ggcacgggcg
     1681 ttacggtctc cgcgctctgc cccggcccga ccgagacggg cttcgtcgcc gccgccggga
     1741 tgagtgagtc gaagctcttc gaccgcggcg cgatgtcggc gcgcgcagtc gccgaggccg
     1801 gctaccgcgg gatgctcgaa ggcaagacgg ttgtcatccc cggcttccga aacgcgctgc
     1861 tggcccgcac ggtgggcttc atgccccgca agctcgtcac caaagtcgtg cgcgggattc
     1921 aggagaggcg cgactcttaa aacaccggcc ttaacgcccg actcccgcgg agcgacattc
     1981 tatgcccggc gccctgcaaa aactttcgag gctgacccga tacccggcgg ccgccgcggt
     2041 cgctctgccc ttcctgccga agcccgccag gaaggcgctc aggcgtttcc acttccgccg
     2101 ctcgatccgc cgctcgctcg gcggccctgc cccgcccgtg ctcgtctatg cgacgccgaa
     2161 ggtcgcctcg accgccgtca cgcacgcgct catgccggtc gtggggcagg cggtcttcca
     2221 cgtccacatg atcgcgcccg agaacatacg cgcgctgcgc gaggcgatgc gcaggcgcgg
     2281 cctgacgcgc gcgcgtcatg acatgaacgg gctcgaagac ctcgcgcacg cgctccggga
     2341 agagctgata aagccgcgca ggcgcgcgcg cgtcgtcagc ctcgtgcgcg agcccgtcgc
     2401 gcgcaacatc tccttctact tccagacgct cgacgtgctg tggaagaccg agcgcgcgca
     2461 cgagcgcttc cccgtcgagc gtctgctggc ggagttccac gacaggttcg tccacgagcg
     2521 cggcatagac tggttcgacg acgagttcaa gcgcgtgctc ggcgttgacg tctatgagcg
     2581 ccccttcccg cgcgagctgg gctaccagcg catagactca ggcccttacg aaatcctgct
     2641 gatgcgccac gacctcgacg accgcctgaa ggagaagtgc ctcgaagagc ttgtgggcgt
     2701 cagtggcgtc cgccttacgc cgcgcaacgt cggggccgag aaggtctata gggaggctta
     2761 cggcgagttc ctcgcgcgcg tgaggctccc ggaggattac gtcgagcggc tgctcggctc
     2821 gaaatacgcc cgccacttct tcactacaga ggagcttgag agggcgcgcg accgctggct
     2881 cggccgtcgc gcccccgcct tccgatgaga aacgggaacc acaaagtccc gggcccgccc
     2941 ggcaacccct tcttcggcac gctcgtgcgg gagagccgcc gcgaccccct gaacttcatg
     3001 acgcggctgg cgcgcgagta cggcgacctc tgctcgttcc gcgtcggctt cgagcgcgtc
     3061 ttcttcgtca accaccccga ctacgtccgc gacgttttag tcaagcacta cgacaacttc
     3121 ctcaagggag cgggcaggcc gcgcgccaag cacttccttg gcgaagggct gctcctgagc
     3181 gagggcgagc tgcaccggcg gcagcgtcgc ctcgcccagc ccggcttcca ccgcgagcgg
     3241 ctcgccgcgt acgccgaaga gatggcgcgc tgcgccgagg gctgctcggc gcgctggcgc
     3301 gacgggcagg agctggacgt ttggccggag atgctccggc tgacgctggc ggtcgtcgga
     3361 aggacgctct tcagcgcgga cgtcgagtcc gacgccgacg aggtcggccg ggcgatgaag
     3421 gccgcgacgc tccgctacag ggccttcagg ctgccgctcg cgcgcctgat cgagaggctg
     3481 ccgctcccgc acgtgcgccg cttccaccgc ggcaagcagc ggctgcgcga ggtcgtgctg
     3541 cgcatcatcg aggagcggcg ccgcgacggc ctcgaccgcg gcgacctgct ctcaatgctc
     3601 atgctcgccg gggacgacgg cggcgagatg acgccctcgc aggtctggga cgaggcgctc
     3661 acgctcttca tcgccggata cgatacgacg gcgacggcgc tgatgtggac atggtggctg
     3721 ctctcgcgcc accccgaggc ggaggcgcgg ctgcatagag agctcgactc ggtgctggaa
     3781 ggcgggcgcc ccgcgcgctt cgaagacctg ccgcgcctcg cctacaccga gcgcgtgctg
     3841 gccgagtcaa tgcgcctcta cccgccgacg tggaggctcg tgcggcgcgc cctcacagac
     3901 ttccccgtgg gcgagcacac catcccggcc ggctcgctag tcgtcgtctg ccagtacgcg
     3961 atgcaccgcg acccgcgctt cttccccgac cccgagcggt tcgaccccga ccgcttcatg
     4021 cccgaagcta ggacggcgcg gccgcagttc gcctacttcc ccttcggcgg aggccctcgg
     4081 cgctgcctcg gcgagtcgtt cgcgatgatg gagggcgtgc tgctcctggc gtcgctcgcg
     4141 cgccgctggc ggctgcgggc cgcgcccggc cacgcggtcg agcccgtgcc cgagcacctc
     4201 ctgcgagcgc ggcacggcgt gaggatggtg ttcgagaggc gttaagtttc gggtgagtca
     4261 gccgtctcgc cgcgcaggcc gccccgcggc gactcgcgcg aaggggcgcg cgagccggcc
     4321 cacgagcggc gtcttgagca ggcgctccgc gagccggaag ggcgtcgagt tatagacgcg
     4381 cgagcgctcc tcccagaacg agagtgagat tcggcgcagg tgcgcggccg cggcgcgcgc
     4441 ttcagccgcg cggtcgggct cgggagccgc ctcgtgctcg gctatcgcat cctcgtaaat
     4501 ctcaaggagc tgggcgatgg tcgcgtcgcg ccccgaagtc tctcgcacgc gccgcgagac
     4561 ttcggccgcg cccgcggggt cgtaaagctc taaggcgcgg ccgacctcgc gcccgaactc
     4621 ctcgggcgtg agttgcggcc ccatcacgcg cacgccgaag ttctcctgcc gcaaacgctc
     4681 gagctcgccc ggcgtcacga gaggcccgag ccgcctccac caatagacga cgacggccgc
     4741 gccgacggcc gcggcttcga gcgccgcccg gcctttggcg aacaccacgt cgtagtcgcc
     4801 gaggatttcc tcggggcgct cgcacgggcg gcccacgccc gcgccgcgca cgtcgagctc
     4861 aacgcgcgcg cgcgcgcacg cctcgcgcgc ggccgcgagg tgctcgctct ccttagtgta
     4921 gttgcagagc acgagcgcgc ggcgcgggcg cggcgggagc ggagcggagc ggggccggaa
     4981 cttctcggcg tcgaaaaact gcgtgagcac ggcgacgcgc tcggcgggga cgccgtgctc
     5041 ggagacgagc ttttcgcggc aggcggcgtc aaccgcgacg tagcggagca cgcgcgggaa
     5101 ggccggcggg tagtcctgct taaaatacca gtcgtggcag aaatagacgg ccggcgcgtc
     5161 ggggaagtgg agcagcgccg tcagggtctc gttggcgtgg tggccgtgga ttatgtcggg
     5221 cgcgacggag aggcgcgaga ggtcttcgac gacggggatg gtctcgcgcc gcatctcggc
     5281 ggcgagcgcg ccgaggcgcg ggctgtaggc gacggggctg tggccgcgcg cgagcagggc
     5341 gcgcgcaacg tcgcgcacgt aaagctccgt gccagtccac tcgtccagcc tgacgttcgt
     5401 gattaagact ctaagcccgc ccatgaatgg gtttgaccgg ggcgccgggt ttaataaggc
     5461 tcggcttcta ttgtgcgccc ggacaatcta aaatgggaag ccatcgaggc agtcatctta
     5521 aagatgggta aggccgcggc ggccggctca attctatctt cttaaagcca tgagcgagaa
     5581 cagaaccgtc cgggcgccgc gcggcgcgcg gctcaactgt aagggctggc agcaggaggc
     5641 cgcgctccgc tgccttatga acaacctcga ccccgaggta gccgagcgcc ccgaagacct
     5701 cgtcgtctat ggcggccgcg gcaaggccgc gcgcgactgg cgctcgttcg aggcgatagt
     5761 gcgcgagctg acgagccttg aggcggacga gacgctgctc gtgcagtccg gcaagcccgt
     5821 cgccgtcttc cgcacgcacg agcacgcccc gcgcgtgctc atcgcaaact cgaacctcgt
     5881 cggcgcgtgg gccacgtggg agcacttcca cgagcttgaa cgccggggcc tgatgatgta
     5941 cgggcagatg acggccggct cctggattta catcggcacg caagggatag tgcagggcac
     6001 gttcgagacg ttcgcggcta tggccgagcg ccacttcggc ggcacgctcg aaggccggct
     6061 cgtcgtctcg ggcggcatgg gcgggatggg cggcgcgcag ccgctcgccg ccacgatgaa
     6121 cggcgccgcc ttcctcggca tagacgttga ccgcgcgcgc atcgagcggc gcgtccgcac
     6181 cggctactgc gaccgcctcg ccctcgacct ggacgaggcg ttgaggattt gcgaggacgc
     6241 agtcgagcag aagcgcgcag tctccgtggg gctcgtcggc aactgcgccg aagtcctgcc
     6301 ggagcttgtg cgccgcggcg tgcgcgttga cgccgtcacg gatcagacga gcgctcacga
     6361 cccgcttaac ggctacgtcc cagaaggcgt cacgcccgga gaggcggagg agttgcgccg
     6421 ctccgacccg aaatcttacg tcgagcgctc tacggcctcg atggcccggc acgtcggggc
     6481 gatgctcgac ttgaagcgcg cgggcgccgt cgccttcgac tacggcaaca acatacgcaa
     6541 gttcgcctcg gacgccggct gccgcgacgc cttcgagata ccgggcttcg tccccgagta
     6601 catacggccg ctcttctgcg agggcaaagg ccccttccgc tgggtcgcgc tctccggcga
     6661 cccggaagac atccgccgca ccgacgacct cgcgctcgaa ctcttccccg aagaccgcac
     6721 gctcaaccgc tggcttcggc tcgcgcgcga cccaggattc tgtatgtgca ggagtccgaa
     6781 gacgagact
//
LOCUS       DASPKR010000243         2602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1582354, whole genome shotgun sequence.
ACCESSION   DASPKR010000243 DASPKR010000000
VERSION     DASPKR010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2602)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2602
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1582354"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2291)
                     /locus_tag="VD968_06675"
     CDS             complement(<1..2291)
                     /locus_tag="VD968_06675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14107.1"
                     /translation="MRTRFMPQIISRSSYLRKALRAAASVAALAAFTFILNAAPALAQ
                     GKDCSGAFTVTLSDGRSFSGAQAEFNVAAGAGLTAQVRGKFTSFDVDLDTFRVTNYTL
                     NSSITGNRPAVIFASKEPLHGRTLTGSLQMRFDREKVELERSSGGLDMEIDANDCSEG
                     GLFQMEPESDFTGAIEFQHTLGPEFTYCLDGLGRVMIVSATSPLVAREDPTAATRTFP
                     EGQAIVGAKVSRWLVQSGTEIDTLAGQEALQPLTSACGGAQPGATPSPTPGATPSPSP
                     TATPTATPSPTATPSPSPTPFITPNEIEAELTGAAINGIVPEGDAQFEVEGTNREFRV
                     RIEEVNLPAGTPLRVFVDNAFVGNIIVAAGLDRSEIRRKTEDGQTVPTVNARSRVVVA
                     DAAGNTVLAGSFSTNAPNPGPAPMPTPGPGGEIRIEARLAGAPIAGLTPSGHARFRRR
                     EGGSRDFNVEVEKVNLPIGTTLQVFVDGVKISDLVLRSTLENEIEFNTNDGQFVPDLT
                     TASAVVVADQQGKTILSGVFNTTAGLPLTVSNDIDDSLFFVEQQYRDFLGREADDGGL
                     NFWSNDIHKCGSTPACVEAMRVNTSAAFFLSIEFQETGYMLYRLNKASYGEMPRRNQF
                     LVDMQAIASGVVVGTTGWQQRLEANRAAAVAAWVERPEFRARYDAMTNEQYVDALLAN
                     AGLSHDQTLRNSLVEGMQSGGHTRASILRIVADREEFRRAEFNRAFVLMQYFGYLHRN
                     PDEGPDTNLAGFNFWLKKLEDAGG"
BASE COUNT          388 a          789 c          941 g          484 t
ORIGIN      
        1 ccgccggcgt cctcgagctt cttgagccag aagttgaagc cggcgaggtt cgtgtccggc
       61 ccctcgtcgg ggttgcggtg caggtagccg aagtactgca tcaggacgaa ggcgcggttg
      121 aactcggcgc gcctgaactc ctcgcggtcg gccacgatgc gcagtatcga ggcgcgcgtg
      181 tggccgcccg actgcatccc ttcgaccaag ctgttgcgca gcgtctggtc gtgcgagagg
      241 ccggcgttgg cgagcagcgc gtcaacgtac tgctcgttgg tcatagcgtc gtagcgcgcg
      301 cggaactccg gccgctcgac ccaggcggcg acggccgcag ctctgttcgc ctccagcctc
      361 tgctgccagc ccgtcgtgcc gacgacgacg ccgctggcga tggcctgcat gtcaacgagg
      421 aactggttgc ggcgcggcat ctcgccgtag ctcgccttgt tcaggcggta gagcatgtag
      481 cccgtctcct ggaactcgat ggagaggaag aaggcggccg aggtgttgac cctcatcgcc
      541 tcgacgcagg ccggggtgga gccgcacttg tgtatgtcgt tcgaccagaa gttgaggccg
      601 ccgtcgtcgg cctcgcggcc gaggaagtcg cggtactgct gctcgacgaa gaagaggctg
      661 tcgtcaatgt cgttgctgac ggttagtggc agccccgccg tcgtgttgaa gacgccggag
      721 aggatcgtct tgccctgctg gtcagcgacg acgaccgccg aggccgtggt caggtcgggg
      781 acgaactggc cgtcgttggt gttgaactcg atctcgttct cgagcgtcga gcggagcacg
      841 aggtcgctta tcttcacgcc gtcaacgaag acctgtaggg tcgtgccgat gggcaggttg
      901 accttttcga cctcgacgtt gaagtcgcgg ctgccgccct cgcgcctgcg gaagcgggcg
      961 tggcccgagg gcgtgaggcc cgcgatgggc gcgccggcga gccgcgcctc gatgcgtatc
     1021 tcgccgccgg ggccgggcgt gggcatcggc gcggggccgg ggttcggggc gttcgtggag
     1081 aaggagccgg cgaggacggt gttgccggct gcgtcggcta cgacgacgcg cgagcgcgcg
     1141 ttgaccgtgg gcacggtctg gccgtcctcg gtcttgcgac gtatctcgct gcggtcgagg
     1201 ccggcggcca cgatgatgtt gccgacgaac gcgttgtcaa cgaagaccct gagcggcgtg
     1261 ccggccggca ggttaacctc ttctatgcgc accctgaact cacggttggt gccttcgacc
     1321 tcgaactgcg cgtcgccctc cggcacgatg ccgttgatgg ctgcgcccgt cagctcggcc
     1381 tctatctcat taggcgtgat gaagggcgtc ggcgaagggc tgggcgtggc cgtcggcgaa
     1441 ggggttgcgg tcggcgtagc cgtgggcgaa ggcgaagggg tcgcgccggg cgtcgggcta
     1501 ggtgtggcgc cgggctgggc gccgccgcac gcggaggtca ggggctgtag ggcctcctgg
     1561 cccgcgagcg tgtcaatctc ggtgccgctc tgcacgagcc agcgcgagac tttcgcgccg
     1621 actatggcct ggccttcagg gaaggtgcgc gtggccgccg tggggtcttc gcgcgcgacg
     1681 agcgggctgg tggcgctgac tatcatgacg cggccgaggc cgtcgaggca gtaggtgaat
     1741 tcggggccga gcgtgtgctg gaactcgatt gcgccggtga agtcagactc gggctccatc
     1801 tggaagaggc cgccctcgct gcagtcgttc gcgtctatct ccatgtcgag cccgccggaa
     1861 gagcgctcca actcgacctt ctctcggtcg aacctcatct gcagggagcc cgtcagagtg
     1921 cggccgtgca ggggctcttt gctcgcgaag atgacggcgg ggcggttgcc cgtgatgctg
     1981 ctgttgagtg tgtagttcgt tacgcggaac gtgtccaaat ccacgtcgaa ggaggtgaac
     2041 ttgccgcgca cctgcgccgt cagccccgcg ccggccgcga cgttgaactc ggcctgcgcc
     2101 ccgctgaacg agcgcccgtc cgagagcgtg acggtgaagg cgccgctgca atccttgccc
     2161 tgcgcgaggg ccggggcggc gttaagaatg aaggtgaagg ccgcgagcgc cgcgacggac
     2221 gcggccgcgc gcagggcctt tcgaaggtat gagcttcggc taataatctg tggcatgaat
     2281 cgggttctca tcgtctccaa ctccggtctg gttagtcggc aaactccacg ggcggggagc
     2341 cactaccggc cgtacagtgc cggggcggag gcgggaaata cgtccgcagc gcaagttttt
     2401 ccggggcggc ggcgcgcgcc agcgtctaac ccacggcacg cgctttgtcg tataatgtca
     2461 tcacagtcgg gtttttaaga gcctgtttgt cgcagagttt tttagagtaa gagcgttttg
     2521 gatgattaaa tttttacacc tctcggacgt tcacctgggc tgccgccgct acaacctcga
     2581 agagcgcacg aaggacttct tc
//
LOCUS       DASPKR010000244         6972 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_807651, whole genome shotgun sequence.
ACCESSION   DASPKR010000244 DASPKR010000000
VERSION     DASPKR010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6972)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6972
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_807651"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1713
                     /locus_tag="VD968_06680"
     CDS             <1..1713
                     /locus_tag="VD968_06680"
                     /inference="COORDINATES: protein motif:HMM:TIGR02608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="delta-60 repeat domain-containing protein"
                     /protein_id="HYE14108.1"
                     /translation="SLDPTFGAGGLVWTNISIQPGGADKFNEVTKDRAHALLLQPDGR
                     LVAGGFASCCNSGGTEDFALTRYNPDGSLDPSFGGDGIVRTDFLGIFTDDEIYGMALQ
                     PDGKIVAVGRAETNDRLGTYDYAVARYNATSGAPATPTPTPLTTPTPAATPTPGGGSA
                     GGLQYYPLPSPVRLFDTRPGQPACSNKGSAMAAGSTYAVAARVACAGLPAAAVSVVGH
                     VTVINNLQGAGPGFVTLFPGGSQRPTVSNINYASGQVLSNAFGVGLGADGSFSIYAHS
                     TTDLLIDVVGYYAPPGAGGLYFHPLPRPVRLLDTRIGQAACDAPGAPVPAGGARAQLA
                     RTACDGLVIPDDALALAGNAAVVNDEAGASAGFLTFYPSGAQRPVVSNMTYAAGQVIS
                     SAFTTTLGADGRFQIYAHSTVNVIVDVTGYYSASALPDANGSAGLLYRALPAPFRLLD
                     TRAGEPACHNPAAPLSGGTAFKQQAEGTCGATSVPAGAEAVTGNATVVNTAAGAGFGY
                     VTLYPSEAERPLVSNINYVPGQALSNSFTVRLGADGAFSIYVLSTTHYITDLTGYFVP
                     TPPN"
     gene            1769..3289
                     /locus_tag="VD968_06685"
     CDS             1769..3289
                     /locus_tag="VD968_06685"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE14109.1"
                     /translation="MKTEEKARGVGGAGGVDVAPAAAAPLRASGSRAGLDASGAPRNG
                     ARPPSRTLTRRRRRTPMSHERRVLLMTLGGGAPAVIVSCVLLWAGGYSPKVFWTLTAI
                     IVALWLGFSFAVQARVVRPLQTVSNLLAALREGDYSFRARGGRGPDALSEVIREINAL
                     GETMREHRLGALEATALLRTVMSEIDVAVFAFDPERRLRLVNRAGERLLGQPAERALT
                     RTAAELGLSECLSVSDDAAAHTLPAAFPGDGGVLKRWGVRRSAFRERGVAHQLLVISD
                     LSQPLREEELKAWQRIVRVLGHELNNSLAPIKSIAGSLASLLAREPPPADWRDDMRHG
                     LTVVSSRAESLSRFMESYASLARLPPPRLAPVRVGEVVERAAGLETRLRVEVEPGADV
                     TVRADADQLEQLLINLVRNAADASLVTGGGVSVGWRRAAGSNGGAGHVEVWVRDEGLG
                     IANPANLFVPFFTTKPGGSGIGLVLCRQIAEAHGGTLALENRTGRRGCEALLRLPL"
     gene            3420..4097
                     /locus_tag="VD968_06690"
     CDS             3420..4097
                     /locus_tag="VD968_06690"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE14110.1"
                     /translation="MIELRNVEKFYETAAGRTYVLRRVNLSVRAGEFVSVMGPSGSGK
                     TTLLSILGMLDSSWGGEYFFEGKAVHKLSLKERSDLHRRNIGFVFQSYHLIDGLTVKE
                     NLEVPLSYRDVKRSESQSLVADILDRFRIVGKKDLYPNQLSGGQQQLVAIARAVVASP
                     SLILADEPTGNLHSSQGKEIMELFKTLNDEGTTVIQVTHSEANAAYGNRVVRLEDGWV
                     VGEQGAN"
     gene            complement(4186..>6972)
                     /locus_tag="VD968_06695"
     CDS             complement(4186..>6972)
                     /locus_tag="VD968_06695"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE14111.1"
                     /translation="TYSISGAVTDAGTNPVAGVTLTLAGTGSSLTEATTTTNASGAYT
                     FTGLPAGGNYTVTPSKQDYSFNPASRSYNALSANQTAQNYTAAVAYTISGTVSGGSGP
                     IAGATVTLSGAGTGTRTTDANGFYSFQSLLPGGTYTVTPSLADHTFDPLSRTFGNLSA
                     SQTANFNGISTAATDLAITTTASAQSVPANEEVTYTLLVTNGGANAAANVVVTDNLPQ
                     TLTFVSCAASAGGTCVGGNAAGNNRTVTFPSLAPGASAVATIVARVNSNVAENTNVSN
                     TAQVSSANNDPAPANNTSSAAFTVRPEPAFDEDGRATTDFGGAGQGAAVALQTDGRIV
                     VGGNAVRNGNRDFALSRYNEDGSPDSTFGTSGRVLTDFFAGHDLLHAVAVQADGRIVA
                     AGQAFNTADKDFAVARYNADGSLDLSFGSNGLVNTDFSSSEDAANAVAIQADGKIVLA
                     GSAGNDFALARYNADGTPDTSFDGDGLLTLDFDSGADVARALVIQPDGRIVAAGTAAD
                     SAGKDFAVARFNEDGTPDASFDSDGKAVVDFTSAGDEAFGLALQSDGRLVLAGMTYSA
                     ATGNKDFALARLNSDGSLDLSFSTDGLATTDFEPDADAAYGVAVQKDGRIVAAGFSRL
                     GNSNYDFAAARYLPNGQLDTSFDADGKQTVPFAGDDRAYSVAVQKNGRIVAAGATTLA
                     DGSRDFAVARLRANGHLDSDGDTEETANLSVAGTASANPAVVGEGFIYTFVVTNNGAG
                     DATGVQLTGALPAGVQFVSANATQGAATVASGQLTANLGGLLRGASATVNVQVTAAAA
                     GLLPMTATASAPETDPNPANNSATVNVRAVRLSAIKLMPSTVVKGGGCEVVTGSVHIS
                     GGVAGQGGVVVALASANPAASVPATVTIPKGASSATFTVTTSRVNSNQSGAITAELGP
                     TTLSRGLTVTPGCP"
BASE COUNT          985 a         2421 c         2505 g         1061 t
ORIGIN      
        1 tcgctcgacc cgaccttcgg cgcgggcggc ctagtctgga cgaacatctc catacagccg
       61 ggcggcgccg acaagttcaa cgaggtgacc aaagacaggg cgcatgcgct cctgctccag
      121 cccgacggcc gtttggtcgc gggcggcttc gccagttgtt gcaacagcgg cgggacggag
      181 gacttcgcgc tcacgcgcta caacccggac gggagcctcg atccgagctt cggcggggac
      241 ggcatcgtcc gcacggactt cctcggcatc ttcaccgacg acgagatata cgggatggcg
      301 cttcagcctg acgggaagat cgtggccgtc gggcgcgccg agacaaacga ccgcctgggc
      361 acgtatgact acgccgtcgc gcgctacaac gccacctccg gcgccccggc cacgccgacg
      421 ccgaccccct tgacgacccc gaccccggcg gcaacgccga cgccgggcgg cggctccgcg
      481 ggcggcctgc aatactaccc gctgcctagc cccgtccgcc tgttcgacac gaggccgggg
      541 cagccggcct gctcgaacaa gggctcggcg atggccgccg gctcgactta cgccgtggcg
      601 gcgcgcgtgg cgtgcgcggg gctaccggcg gccgccgtct cagtggtagg ccacgtcacg
      661 gtcatcaaca acctgcaggg cgcggggccg ggcttcgtca cgctcttccc cggcggctcg
      721 cagcggccca cggtctcgaa cattaactac gcttcggggc aggtcttgtc taacgccttc
      781 ggcgtggggc tcggcgccga cggctcgttc tcgatttacg cgcactcgac tacggacttg
      841 ctgatagacg tcgtcggcta ctacgcgccg cccggcgcgg gcggcctcta cttccacccg
      901 ctgccccggc ccgtgcgtct gctcgacacg cgcatagggc aggcggcgtg cgacgcgccg
      961 ggcgcgcccg tccccgccgg cggcgcccgc gcgcagttag ctaggacggc gtgcgacggg
     1021 ctcgtcatac cagacgacgc cttggcgctt gccggcaacg ccgcggtcgt caacgacgag
     1081 gccggtgcct cggccgggtt cctgaccttc tacccgtccg gcgcgcagcg ccccgtcgtc
     1141 tcgaacatga cttacgccgc ggggcaggtg atatcaagcg ccttcacgac gacactcggc
     1201 gcggacggcc ggttccaaat ctacgcccac tcgaccgtca acgtcatcgt ggacgtgacg
     1261 ggctactaca gcgcgagcgc gctgccggac gccaacggct cggccggcct gctctaccgc
     1321 gcgctgcccg cgcccttccg cttgctcgac acgcgcgccg gcgagcccgc atgccacaac
     1381 cccgccgcgc cgctctccgg cggcaccgcc ttcaagcagc aggccgaggg cacttgcggc
     1441 gccacgagcg tcccggccgg ggccgaggcc gtgacgggca acgcgaccgt cgtgaacacg
     1501 gcggccggcg ccggcttcgg ctacgtgacg ctctacccga gcgaagccga gcggccgctc
     1561 gtgtcaaaca taaattacgt gccggggcag gcactctcga actccttcac cgtccggctc
     1621 ggtgccgacg gggcgttctc catctacgtg ctctcgacga cgcactacat aaccgacttg
     1681 accggttact tcgtccccac gcccccgaac taaatccggc ctactccttt gtcgcggccg
     1741 cgaccttcgt tagaatcgaa gcgcgcgtat gaagaccgag gagaaggcga ggggcgtggg
     1801 aggcgcgggc ggcgttgatg tggcgccggc cgccgcggca cccttgcgcg cgtcgggctc
     1861 gcgcgccggg ctcgacgcct cgggcgcgcc gcgtaacggc gcccgcccgc cgtcccgcac
     1921 gctcactcgc cggcggcggc gcacgcccat gagccacgag cggcgagtgc tgctgatgac
     1981 tctgggcggg ggcgcgccgg ccgtcatagt ctcgtgcgtg ctgctgtggg cgggcggcta
     2041 ctcgcccaaa gtcttctgga cgctcacggc gataattgtc gcgctgtggc tcggcttctc
     2101 cttcgccgtg caggcgcgtg tggtgcggcc gctccagacg gtctcgaacc tcctggcggc
     2161 gctgcgcgag ggcgactact ccttccgcgc gaggggcggg cgcggccccg acgcgctgag
     2221 cgaagtcata cgggagataa acgcgctggg cgagacgatg cgcgagcaca ggctcggcgc
     2281 gcttgaggcg acggctctgc tgcgaaccgt catgtccgag atagacgtgg ccgtcttcgc
     2341 cttcgacccg gagcggcgcc tgcgcctggt caaccgcgcg ggcgagcgtc tgctgggcca
     2401 gccggccgag cgggcgctca cgcggacggc cgcggagctt ggcctctccg agtgcctgag
     2461 cgtgagcgac gacgccgctg cgcacacgct ccccgcggcc ttccccggcg acggcggcgt
     2521 gctcaagcgg tggggcgtgc gccgcagcgc gttccgcgag cgcggcgtcg ctcaccagct
     2581 cttagtcata agcgacctga gtcaacctct gcgcgaggag gagctgaagg cttggcagcg
     2641 catcgtccgg gtgctcggcc acgagcttaa caactcgctc gcgccgataa agtccatcgc
     2701 cgggagcctc gcgtcactgc tcgcgcgcga gcccccgccc gccgactggc gcgacgacat
     2761 gcgccacggc ctcacggtcg tctcctcgcg cgccgagagc ctgagccgct tcatggagtc
     2821 ctacgcgagc ctcgcgcgcc tgccgccgcc gcgcctcgcg cccgtgcggg tgggcgaagt
     2881 ggtcgagcgc gcggcggggc tcgagacccg cctgagagtc gaggtcgagc cgggcgccga
     2941 cgtgaccgtg cgcgccgacg ccgaccagct cgaacagctc ctcatcaacc tcgtgcgcaa
     3001 cgcggcggac gcctcgctgg ttacgggcgg gggcgtcagc gtcggctggc ggcgcgcggc
     3061 cggctcgaac ggcggcgccg gccacgtcga ggtctgggtg cgcgacgagg ggctcggcat
     3121 cgccaacccc gcgaacctct tcgtcccctt cttcacgacg aagccgggcg gctccggcat
     3181 cggcctggta ctctgccggc agatagccga ggcgcacggc ggcacgctcg cgctcgaaaa
     3241 ccgcaccggc cggcgcggct gcgaggcgct tcttcgcctg ccgctctgac ccgccgcggc
     3301 gtctcacttt tgggaacggg caatcccgca aacggacaat cgggcgggcg caggcgctcg
     3361 gcgtcggggc gaaacgcgca gggggcggcg tggcacgccg cttcctttag gagcgcgcga
     3421 tgattgagct caggaacgtc gaaaaattct acgagacggc cgccggccgc acttacgtgc
     3481 tgcgccgcgt caacctctcc gtccgggcgg gcgagttcgt ctccgtcatg gggccttccg
     3541 ggtcgggcaa gaccactctg ctctcgatac tcggcatgct cgacagctcg tggggcggcg
     3601 aatatttctt cgagggcaag gccgtgcaca agctgagcct caaggagcgc tccgacctcc
     3661 accggcgcaa cataggcttc gtcttccaga gctaccacct gattgacggc ctgacggtta
     3721 aggagaacct ggaggtgccg ctctcctacc gcgacgtgaa gcgctcggag agccagtcgc
     3781 tcgtcgccga catactcgac cgcttccgca tagtcggcaa gaaagacctc tacccgaacc
     3841 agctctcggg cgggcagcag cagctcgtcg ccatcgcgcg cgccgtcgtc gcgagcccct
     3901 cgctcatact cgcggacgag cccacgggca acctccattc gagccaaggc aaggagataa
     3961 tggagctatt caagacgctc aacgacgaag gcacgaccgt catacaggtc actcactccg
     4021 aggcgaacgc ggcctacggc aaccgggtcg tgcggctcga agacggctgg gtcgtcggcg
     4081 agcaaggcgc gaactgattg ccggataaac agggccgagg gggttgatga cggcgccgcc
     4141 gtcatcaacc ccctcggctt ttctatctag ccgtcggcgg ccggctcacg ggcagccggg
     4201 cgtgacggtc aggccgcggc tgagcgtcgt cgggcctaac tcggccgtta tcgcgcccga
     4261 ctggttcgag ttcacgcgcg aggtcgtcac ggtgaaggtc gcgctcgaag cgcccttcgg
     4321 tatcgtgacg gtcgccggga ctgaggccgc cgggttagcg ctcgcgagcg cgaccactac
     4381 gccgccctgc ccggcgacgc cgcccgagat gtgaaccgag ccggtcacga cctcgcaccc
     4441 gccgcctttc accacggtcg agggcatcag cttgatggcg ctcaaacgca cggccctcac
     4501 gttgacggtc gcggagttgt tcgccgggtt cgggtctgtc tcgggcgcgg aggccgtcgc
     4561 cgtcatcggg agcaggccgg cggcggccgc cgtcacctgc acgttgaccg tcgccgacgc
     4621 gccgcgcagc agcccaccca ggttggccgt caactgcccc gaagcgaccg tggccgcccc
     4681 ttgagtcgcg ttggccgaga cgaactgcac gccagcgggg agcgcgcccg tgagctgcac
     4741 gcccgtggcg tcgcccgcgc cgttgttcgt cacgacgaag gtgtatatga agccctcgcc
     4801 gacgaccgcg gggttggccg acgccgtgcc ggcgacggag aggttggcgg tctcctccgt
     4861 gtcgccgtcc gagtcgaggt ggccgttcgc gcgcaggcgg gccacggcga agtcgcggct
     4921 gccgtcggcg agcgtggtgg cgcccgccgc cacgatgcgc ccgttcttct ggacggcgac
     4981 cgagtaggcg cggtcgtcgc cggcgaacgg gacggtctgc ttgccgtccg cgtcgaagga
     5041 cgtgtcgagc tgcccgttcg ggaggtatcg cgcggcggcg aagtcgtagt tcgagttgcc
     5101 gaggcgcgag aagcccgcgg ctactatcct cccgtccttc tgcacggcca cgccgtaggc
     5161 cgcgtcggcg tcgggctcga agtccgtggt ggcgaggccg tcggtgctga acgagaggtc
     5221 gagcgagccg tccgagttca ggcgcgcgag cgcgaagtcc ttgttgccgg tcgcggcgct
     5281 gtaggtcatg ccggcgagga cgagccgccc gtccgactgg agcgcgagcc cgaaggcttc
     5341 gtcgccggcc gaggtgaagt caacgacggc cttgccgtcc gagtcgaaag aggcgtcggg
     5401 cgtgccgtcc tcgttgaagc gggcgacggc gaagtccttg cccgccgagt cggccgccgt
     5461 gccggccgcg acgatgcggc cgtccggctg gatgacgagg gcgcgcgcaa cgtcggcccc
     5521 cgagtcgaag tcgagcgtga gcagcccgtc gccgtcgaag gacgtgtcgg gcgtgccgtc
     5581 ggcgttgtag cgcgccagcg cgaagtcgtt gcccgcggaa cctgccagaa cgatcttccc
     5641 gtcagcctga atcgccacgg cgttggccgc gtcctcggac gaggagaagt cggtgtttac
     5701 gaggccgttc gagccgaacg agaggtcgag cgagccgtcg gcgttgtagc gggcgacggc
     5761 gaagtccttg tccgccgtgt tgaaggcctg gccggcggcg acgatgcggc cgtccgcctg
     5821 gacggctacg gcatgaagca ggtcgtggcc ggcgaagaag tcggtcagca cgcggcccga
     5881 cgtgccgaag gtcgagtcgg gcgagccgtc ctcgttgtag cgtgacaggg cgaagtcgcg
     5941 gttgccgttg cgcacggcgt tgccgccgac gacgatgcgg ccgtcggtct gtagggcgac
     6001 cgccgcgccc tggccggcgc cgccgaagtc ggtggtcgcg cggccgtcct cgtcgaaggc
     6061 cggctcgggc cggacggtga aggccgccga ggaggtgttg ttcgcgggcg ccgggtcgtt
     6121 gttggccgaa gagacctgcg ccgtgttgct gacgttcgtg ttctcggcca cgttcgagtt
     6181 gacgcgggcg acgatggtcg ccacggccga cgcgcccggc gcgagagacg ggaaggtgac
     6241 ggtgcggttg ttgcccgcgg cgttgccgcc gacgcacgtg ccgcccgcgg aggccgcgca
     6301 cgagacgaag gtcagcgtct ggggcaggtt gtccgtgacg acgacgttgg ccgccgcgtt
     6361 cgcgccgccg ttcgtgacga gcagcgtgta ggtgacttcc tcgttcgccg gcacgctctg
     6421 ggccgaggcc gtcgtcgtga tggcgaggtc ggtcgccgcg gtcgagatgc cgttgaagtt
     6481 agcggtctgg ctcgcggaca ggttaccgaa ggtgcgcgag agcgggtcga acgtgtggtc
     6541 ggcgagcgac ggcgtgacgg tgtaagtccc gcccggcaag aggctctgga acgagtagaa
     6601 gccgttcgcg tcggtcgtgc gcgtccccgt ccctgcgccc gagagcgtga cggtcgcgcc
     6661 cgcaatcggc cccgagccgc ccgagacagt gccgctgatg gtgtaggcga ccgccgccgt
     6721 gtagttctgc gcggtctggt tggcgctcag ggcgttgtag ctcctgctcg cggggttgaa
     6781 gctgtagtcc tgcttcgagg gcgtgacggt gtagttgccg ccggccggga gccccgtgaa
     6841 ggtgtacgcg ccggaggcgt tcgtcgtagt cgtcgcttcc gtgagcgacg agccggtgcc
     6901 tgcgagcgtg agggtcacgc ccgcgacggg gttggtgcct gcgtccgtga cggcgccgga
     6961 gatgctgtag gt
//
LOCUS       DASPKR010000245         9912 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_30884, whole genome shotgun sequence.
ACCESSION   DASPKR010000245 DASPKR010000000
VERSION     DASPKR010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9912)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9912
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30884"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1557
                     /locus_tag="VD968_06700"
     CDS             <1..1557
                     /locus_tag="VD968_06700"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HYE14112.1"
                     /translation="GMKRLFASFAAAVLLATAAASLSTHAPVAAGQSEKSKVKKKARP
                     VEGEYVVMLEEWAAQPYGENSFAGHLARDLVSGVGGKVKHVYKHSVLGFSAELSEQAA
                     EALANDPRVRSVEQNGVVTAVTTQSNPPWGLDRIDQRNRPLDAQYNYTPTGAGVHAYI
                     IDTGIRKTHTQFGGRANGASYSSINDGNGSNDCNGHGTHVAGTVGGSTYGVAKGVTLH
                     AVRVLDCQGNGTDATVIAGVDWVTANRQTPAVANLSLGGGASSALDTAVQNMINAGVA
                     TAVAAGNDYGANACNYSPARVAAAITVGSTTSTDARSDFSNIGTCLDIFAPGSSVQSS
                     WWTSDTATNTISGTSMATPHVAGVAALYLQNNPSASPSTVRDQIVNTATTNVLTGIGS
                     GSPNRLLYSLLTTGGGGGGAPAACSGGTLHTGTLTFTGDYDYHPNGSYYYSSVSGYHK
                     GCLVGPTSGADFDLYLQKWNGSAWVIVARSESVTSSETISYYGTAGYYRWQIYSYSGS
                     GSYNFWRLAP"
     gene            complement(1651..3945)
                     /locus_tag="VD968_06705"
     CDS             complement(1651..3945)
                     /locus_tag="VD968_06705"
                     /inference="COORDINATES: protein motif:HMM:NF012271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HYE14113.1"
                     /translation="MRKRFLTLTLSLALTAASALLLTTPPHPAAAQGEAASPRPQVSR
                     AVGYAKTAPARTFEERRAAVQTGQIKGENPPRQIRRVPNQGLPKEQNREGQTHGTDAA
                     VQNSYRTNAVTSEPLIPTPETSFEGLSSDNNAAVLGVRYLPPDTVGDIGPNHYVQAVN
                     TLVRVFDRAGAPLTGAFLMSQLFAAVGAPCGTTDDGDPIVLYDQAADRWLISQFVASA
                     PYHQCIAISASGDPTGAYHAYAFQMPNNKFNDYPHFGVWPDGYYMSDNQFTNFFAGAG
                     VFAFDRAKMLAGDPSASYIYFDLATNDGGMLPSDWDGTNAPPAGSPNYFAQFTAGEFG
                     DPSDAMRIWEFRANFSNPAASTFTEHPASPVPVAAFNPTNPSGRLDIEQPSPASSSSY
                     LDSLQDRLMHRLQYRNFGTHESLVVTHTVNVGTGTTVSTHRASVRYYEFRRAGGAWAV
                     NEEATFAPNDGLNRWMGSAAMNGHGDIAVGYSVSSTTVFPGIRYAGRLATDPPGGLFQ
                     GEAVLINGSGSQTSTSGRWGDYSSLNVDPVDDCTFWYTTEYYSASSSAGWRTRIGKFK
                     VGGCGPPPPAPAAPSGLTATATGSDTVSLAWADNSDNEGGFRVERCAGAGCTNFATAG
                     QTGAGATSFGDTGLSPGTTYTYRVVAFNAGGDSAPSNTASATTQALPPPAAPTNLSVT
                     SVSKNSVGLAWNDNSTNETGFQLERCTGTTCTNFALVASPLPNVTTYTDTGRARRTTY
                     RYRVRAVNGAGPSAYSNIVSATTR"
     gene            4311..5339
                     /locus_tag="VD968_06710"
     CDS             4311..5339
                     /locus_tag="VD968_06710"
                     /inference="COORDINATES: protein motif:HMM:NF021285.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase family protein"
                     /protein_id="HYE14114.1"
                     /translation="MLGRYIRAKERRHAERDRNRVVRPFEWGVEFVPAHVNGGGPREA
                     LARHAREAVGASEAFYSAPEVGDYRLEGERLSWTSAVLTPSPENNTARARFFPERQAE
                     NQREGGRRAVVVLSQWNADEESHVALCRVLQRLGVASLRLTLPYHEERRPAEIERADF
                     LVCSNVGRTIQSMRQAVLDTRAAVAWLASRGYERIGIVGTSIGSCTAFLAFAHDERIS
                     TGVFNHVSGYVADVVWHGISTRHVRAGIEGVLTLEELREAWLPISPMPFAERLTRQRP
                     RPMRFIAARHDLTFPADLSHDVIEKVRGLGLPLDVAWLPCGHYTSGEPPWVYLDGWKI
                     VSFLRRHL"
     gene            5427..5585
                     /locus_tag="VD968_06715"
     CDS             5427..5585
                     /locus_tag="VD968_06715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14115.1"
                     /translation="MADERNDKVCANPPCSCPVEGGERYCSVHCQSTENTVQIDCDCG
                     HQGCSGDF"
     gene            complement(5623..7794)
                     /locus_tag="VD968_06720"
     CDS             complement(5623..7794)
                     /locus_tag="VD968_06720"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE14116.1"
                     /translation="MPPTEERGESRERERADRLRAEGGVHLRAQLLDAVEQAVIATDL
                     SGTITYWNRHAELLYGWSAAEAVGRNVMEVTPAAASHEQAAEIMARLTEGKSWSGEFL
                     VRRRDGSTFPAHVTDSPILDAEGRLVGVVGLSVDITERVRAEEALLDAERRAVREYET
                     LLHRLTHLAESLGTARDHLTIFRDLKDFAHVSVPCIGIFISLYDADRDVRMAQYAWGD
                     GQEVDVTGLPPMPVTAEGPNSRAVRTGHVVITNDYWEVKRKGLGQLGVLVGPDNGLRP
                     QSSLVVPMATMGRIVGTIEVQSYENRAYREEHITAMRMAANLAAVAIENMRLLRFETR
                     AREFAEESNRMKDEFLATLSHELRTPLTAVLGWAQMLRTGRLDERAAATALEVIERNA
                     RTQQQIVDDLLDSSRIITGQLRFEPQPTDVRAVVEAAADTVRPAAAAKRIKLETRFDP
                     RSCLVMGDAGRLQQVVWNLLSNAVKFTPAGGEVAIGVEPAGAHVRVTVSDTGQGISPN
                     FLPYVFDRFRQGDQSTTREHGGLGLGLAIVRHLVELHGGTVRAESEGAGMGSRFTIEL
                     PALGAAGGDGGREAAVEAKGSARQRAILDGLRVLVVDDDRDALDLVRVVLEQGGADVV
                     AAESAAQALCALEAGARPEVLVCDIGMPGEDGYSLLRKVRALGRELGGAVPAVALTAY
                     AGEADRALALAAGFQLHMPKPIDPSALVSAVARLAGVGEKV"
     gene            complement(7870..8607)
                     /locus_tag="VD968_06725"
     CDS             complement(7870..8607)
                     /locus_tag="VD968_06725"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE14117.1"
                     /translation="MGEDAQSAEGLIVVEAAVKRYGEVLAVGGVSLRVGAGEAYALLG
                     ANGAGKSTLIRMIVGLTVPDEGSVTVCDQDMKKRAQEAKRRLGYLPEELYFYQRLTGR
                     EYLSLVAGLKGAEAGGVAAEVEFFELARVADKWVGGYSLGMRKKLGLAAAFLGSPSVL
                     VLDEPLNGLDVEMMRKLRLRVERERDAGRAFVISSHVMSFVERVADRVGIMRAGLLVA
                     EGAPDELRRATSIPDAPFEDVFFHLAN"
     gene            complement(8613..>9912)
                     /locus_tag="VD968_06730"
     CDS             complement(8613..>9912)
                     /locus_tag="VD968_06730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14118.1"
                     /translation="DSDWRPSDEVAAGLAVAAAACLLALGVSRAVAEIYHLRRPESLF
                     DALPVSARAQLAAALVRRAARVSGVAAAAVVARSLAGGGVWDARLPALLACFVAVTAS
                     GQALAAVQWVHWGHRRERPHAAVALLMFAACSVAAGLLLFVAVKPWAAPELGRAWLVA
                     GSIALAGAALLLLFALHERWRASDLEYAKRLGAKDSWGRLGERVARRACGSEAVAAQL
                     ARDLQLTLRGFSSAVYVAAGLAALFVIVLVAALTTGLLPEGSVPSSLFEATWLPGVLA
                     VKFASVLACVALASLVPVLVAHQLPHFWLERAVGARGADAWRAKLLYARAVTLPASLA
                     AWAAGALCGAAPASYVVPMLAECVWLWWIVSTLAGSLAFEMPEQPGLALVLMACAGLA
                     AGGFVAFLWPMGLAIYGLGVDHLKMRGHHRAHLHLNSEGV"
BASE COUNT         1567 a         3476 c         3416 g         1453 t
ORIGIN      
        1 ggaatgaaga gacttttcgc gtcgttcgcc gcggccgtgt tgctcgccac ggcggccgcc
       61 tcactctcca ctcacgcgcc cgtcgcggcg ggccagtcgg aaaagagcaa ggttaagaag
      121 aaggcacggc ccgtcgaggg cgagtacgtc gtcatgctcg aagagtgggc ggcgcagccc
      181 tacggcgaga actccttcgc cgggcacctc gcgcgcgacc tcgtctcggg cgtcggcggc
      241 aaggtgaaac acgtctataa gcattcggtg ctcggcttct cggccgaact ctcggagcag
      301 gcggccgaag cgctcgccaa cgacccgcgc gtgcgctccg tcgagcagaa cggcgtcgtc
      361 accgccgtga cgacgcagtc gaacccgccg tgggggctcg accgaataga ccagcgcaac
      421 cgcccgctcg atgcccagta caactacacg cccacgggcg cgggcgtcca cgcctacatc
      481 attgacacag ggatacgcaa gacgcacacg cagttcggcg ggcgcgccaa cggcgcgtcc
      541 tactcatcca tcaacgacgg caacggctcg aacgactgca acggccacgg cacgcacgtc
      601 gccggcaccg tcggcggctc gacctacggc gtcgcgaagg gcgtcacgct ccacgccgtc
      661 cgcgtgctcg actgccaggg caacggcacg gacgccaccg tcatcgccgg cgttgactgg
      721 gtgacggcca accggcagac gcccgcggtc gccaacctga gcttaggcgg cggcgcatcc
      781 tcggcgctcg acacggccgt gcagaacatg attaacgctg gcgtggcgac ggccgtcgcc
      841 gccggcaacg actacggcgc gaacgcctgc aactactcgc ccgcgcgcgt agccgccgca
      901 atcaccgtcg gctcgaccac gtccacggac gccaggtcag acttctccaa catcggcacg
      961 tgcctcgaca tattcgcgcc cggctcgtcc gttcagtcct cgtggtggac ttcggacacg
     1021 gcgacgaaca ccatcagcgg cacctcgatg gcgacgccgc acgtcgcggg cgtcgcggcc
     1081 ctctacctgc aaaacaaccc ctcagcctcg ccctcgacgg tgcgcgacca gatagtcaac
     1141 acggcgacga caaacgtgct gaccgggata gggtcgggct cgcccaaccg cctgctctac
     1201 tcgctgctga cgacgggcgg cggcgggggc ggcgcgcccg cggcctgctc gggcggcact
     1261 ctccacacgg ggacgctcac gttcacgggc gactacgact accacccgaa cggcagctac
     1321 tactacagct cggtctccgg ctaccacaag ggctgtctcg tcgggccgac ctctggcgcc
     1381 gactttgacc tctacctgca aaagtggaac ggctcggcgt gggtcatcgt cgcgcgctcc
     1441 gagagcgtga cctcgagcga gaccatctcc tattacggca cggccggcta ttaccgctgg
     1501 cagatttact cctacagcgg ctcgggcagc tacaacttct ggcggctggc gccgtagtaa
     1561 gggagtttag ggttaaaggc acagacagga gcgccgcccg tgaagtcgaa ggcttcacgg
     1621 gcggcgctcc tgcttaaccc gaaactcccc tcagcgcgtc gtcgcgctga cgatgttcga
     1681 gtaggcggac gggccggcgc cgttgacggc gcgcacgcgg tagcggtagg tggtgcggcg
     1741 ggcgcggccg gtgtccgtgt aggtcgtgac gttgggcagc ggcgacgcga cgagcgcgaa
     1801 gttggtgcag gtcgtgcccg tgcagcgctc tagctggaag ccggtctcgt tcgtcgagtt
     1861 gtcgttccac gcgaggccga ccgagttttt cgacacggaa gtcacgctca ggttcgtggg
     1921 cgcggcgggc ggcggcagcg cctgcgtggt cgccgacgcc gtgttcgagg gcgcggaatc
     1981 gccgcccgcg ttgaaggcga cgacacgata ggtgtaggtc gtccccggcg agaggccggt
     2041 gtcgccgaac gaggtggcgc cggcgcccgt ctgcccggcc gtggcgaagt tagtgcagcc
     2101 ggcgccagcg cagcgctcga cgcggaagcc gccctcgttg tcggagttgt ccgcccacgc
     2161 gaggctgacg gtgtcggagc cggttgccgt agcggtcagc ccgctcggcg cggcgggcgc
     2221 gggcggcggc gggccgcagc ctcccacctt gaacttgccg atgcgcgtgc gccagcccgc
     2281 cgaggacgag gccgagtaat actcggtcgt gtaccagaag gtgcagtcgt ccacggggtc
     2341 aacgttgagc gagctgtagt cgccccagcg gcccgaggtc gaggtctgcg agcccgagcc
     2401 gttaatcagg acggcctcgc cctggaagag cccgcccgga gggtctgtag ccagacggcc
     2461 ggcgtagcgt atgccgggga agaccgtcgt gctagagacc gaatagccca cggcgatgtc
     2521 gccatgcccg ttcatcgccg ccgagcccat ccagcggttg aggccgtcgt tgggggcgaa
     2581 ggtcgcctcc tcgttgaccg cccacgcgcc gcccgcgcgg cggaactcgt agtagcgcac
     2641 gctggcgcgg tgcgtcgaga cggtcgtgcc agtcccgacg ttgaccgtgt gtgtgacgac
     2701 gagcgactcg tgtgtgccga agttgcggta ctggagccgg tgcatgaggc gatcctgtaa
     2761 cgagtcgagg tagctcgaag aggacgcggg cgagggctgc tcgatgtcga ggcgccccga
     2821 agggttcgtc gggttgaagg ccgcgactgg cacggggctc gcggggtgct cggtgaaggt
     2881 cgaggcggcg gggttcgaga agttggcgcg gaactcccag atgcgcatgg cgtccgatgg
     2941 gtcgccgaac tcgcccgcgg tgaactgcgc gaagtagttg ggcgagcccg cgggcggcgc
     3001 gttcgtgccg tcccagtcgg agggcagcat gccgccgtcg ttcgttgcca ggtcgaagta
     3061 gatgtagctg gctgaggggt cgcccgccag catcttggcg cggtcgaagg cgaagacgcc
     3121 cgcgccggcg aagaagtttg tgaactggtt gtcgctcatg tagtagccgt cgggccagac
     3181 gccgaagtgc gggtagtcgt tgaatttgtt gttcggcatc tggaaggcgt acgcgtggta
     3241 ggcgcccgtc gggtcgcccg aggccgagat ggctatgcac tggtggtagg gggcggaggc
     3301 cacgaactgg ctgatgagcc agcggtcggc cgcctggtcg tagagcacga tggggtcgcc
     3361 gtcgtcggtc gtgccgcagg gcgcgccgac ggccgcgaag agctggctca tcaggaaggc
     3421 gcccgtcagc ggcgcccccg cgcggtcgaa gactcggacg agcgtgttga ctgcctgcac
     3481 gtagtggttc gggccgatgt cgccgaccgt gtcgggcggg aggtagcgca cgccgagcac
     3541 ggcggcgttg ttgtcgctag agagcccctc gaagctcgtc tccggcgtgg ggattagcgg
     3601 ctcgctggtg acggcgttcg tgcggtacga gttctgtacg gcggcgtcgg tgccgtgggt
     3661 ctggccctcg cggttctgct ctttggggag gccctggttg gggacgcgcc gaatctgccg
     3721 cggcgggttc tcacccttaa tctggccggt ctggactgcg gcccgccgct cttcgaaggt
     3781 gcgcgccggg gccgtcttcg cgtagccgac ggcgcgcgag acctgcggcc ttggcgaagc
     3841 ggcctcgccc tgtgcggcgg cggggtgcgg gggagtcgtg agaaggaggg ctgaggccgc
     3901 cgtcaaggca aggctcaggg tcagtgtcag gaagcgtttt ctcatacgcg aaatattctc
     3961 ctctgggctt acggtcaatc ggggaaggcg ggggcggggc tgccgccctg tgcgctaggc
     4021 cgtcgcgccg tgcctcgtgg tgaacggcgg ccgcctgtga taactgcgcc ggccggccgc
     4081 gagaagcttt aatgagtaga aggcaaacga ggcccgctgt tgagacgccg ggtgcggcgc
     4141 cagaaccgcg aatgaagtgc ggcgcgaagg atacaggcgg cggcgcgcga agtcaaagtt
     4201 tacaggcggc gcggtcggcg gcggcgcttg ccttcggcgt gcgcgcgcct ttaggatgac
     4261 gcactcactc ttccggttaa aaattttcgg ggcgaggaac gggcgaggtc ttgctggggc
     4321 gttacatcag ggcgaaggag cggcggcacg cggagcgcga caggaaccgc gtcgtgcgcc
     4381 cgttcgagtg gggcgtggag ttcgtccccg cgcacgtgaa cggcggcggg ccgcgggagg
     4441 cgctcgcgcg ccacgcgcgc gaagcggtcg gcgcgagcga agctttttac tcggcgcccg
     4501 aggtcggcga ctaccgcctc gaaggcgaga ggctctcttg gacgagcgcc gtcctgacgc
     4561 cttcgcccga gaacaacact gcgcgtgcgc gcttcttccc cgagaggcag gcggagaatc
     4621 aacgagaggg aggccgccgc gccgtcgtcg tgctctcgca gtggaacgca gacgaggaga
     4681 gccacgtcgc gctgtgccgc gtccttcagc gcctcggcgt cgcctcgctc cgcctcacgc
     4741 tgccctatca cgaagagcgg cggcccgcgg agatcgagcg cgcggacttc ctcgtctgct
     4801 cgaacgtggg gcgcacgatt cagtccatgc ggcaggccgt gctcgacacg cgcgcggccg
     4861 tcgcgtggct cgcctcgcgc ggctacgagc gcatcggcat cgtcggcacc agtatcggct
     4921 cgtgcaccgc cttcctcgcc ttcgcccacg acgagcgcat ctcgacgggg gtcttcaacc
     4981 acgtctccgg ctacgtcgcc gacgtggtct ggcacggcat ctccacgcgc cacgtgcgcg
     5041 cgggcataga gggcgtgctc acgctcgaag agctgcgcga agcgtggctc ccgataagcc
     5101 ccatgccttt cgccgagcgg ctcacgcgcc aacgcccgcg ccccatgcgc ttcatcgccg
     5161 cgcgccacga cctcacgttc ccggcagacc tctcgcacga cgttatcgag aaggtcaggg
     5221 gcctgggcct gccgctcgac gtggcgtggc tcccgtgcgg ccactacacg agcggcgagc
     5281 cgccgtgggt ctatctcgac ggctggaaga tagtctcttt cctccggcgc cacctgtgaa
     5341 ggcggccgtt cttgactcgg cgcgcgattt ggcttagaag cttttagtct tttgcggaat
     5401 caaaacgaca gcggaggatt cgagtgatgg ccgatgagag gaacgacaag gtctgcgcca
     5461 acccgccgtg cagctgcccc gtcgagggcg gcgaaaggta ttgcagcgtc cactgccaga
     5521 gcacggagaa cacggtgcag atagactgcg actgcggcca ccagggctgc tcgggcgact
     5581 tctaagaacg gaagggggca tgactcaaac gagccaggcc ccttagactt tctcgcccac
     5641 gccggccagc cgcgcgacgg cagagacgag cgcggaaggg tcaatcggct tcggcatgtg
     5701 aagctggaag cccgcggcga gcgccaaggc gcggtcggcc tcgcccgcgt aggccgtcaa
     5761 ggccacggcc ggcacagcgc cgcccagctc gcgccccagc gccctcactt tacgcagcag
     5821 cgaatagccg tcctcgcccg gcatccctat gtcgcacact agcacctcgg gccgcgcccc
     5881 ggcctctaaa gcgcacagag cctgggccgc ggactcggcc gccactacgt ccgccccgcc
     5941 ctgttcgagc accaccctga cgaggtcgag cgcgtccctg tcgtcgtcaa cgacgagcac
     6001 gcgcagcccg tccagtatcg cccgctgacg ggcgctcccc ttcgcctcga cggcagcctc
     6061 tcgccccccg tctcccccgg ccgccccgag cgcgggcagc tctatcgtga accgcgagcc
     6121 catgcccgcc ccttcgctct cggcgcgtac agtgccgccg tgcagctcga ctaaatggcg
     6181 gactatcgct agcccgaggc cgaggccgcc gtgctcgcgc gtcgttgact ggtcgccctg
     6241 ccggaagcgg tcgaagacgt aagggagaaa gtttgggctt atcccctgcc ccgtgtccga
     6301 gacggtgacg cgcacgtgcg cgcccgcggg ctcgacgccg attgcaacct cgccccccgc
     6361 gggcgtgaac ttcacggcgt tcgacaagag gttccagacc acctgctgca agcggccggc
     6421 gtctcccatc acgaggcacg agcgcgggtc gaagcgcgtc tcgagtttta tcctcttggc
     6481 ggcggccgcg ggccgcacgg tgtcggcggc ggcctcgacg acggcgcgca cgtccgtcgg
     6541 ctgcggctcg aagcggagct gccccgtgat gatgcgcgac gagtcgagca ggtcgtcaac
     6601 tatctgctgc tgcgtgcgcg cattgcgctc gatgacctcg agggccgtgg ccgcggcgcg
     6661 ctcgtcgagc cggcccgtcc tgagcatctg cgcccagccg agcacggccg tcaggggcgt
     6721 gcggagctcg tgcgagagcg tggcgaggaa ctcgtccttc atgcggttcg actcctcggc
     6781 aaactcgcgc gcgcgggtct cgaacctgag cagccgcatg ttctcgatgg cgacggccgc
     6841 gaggttggcg gccatgcgca tggccgtgat gtgctcctcg cggtaggcac ggttctcgta
     6901 ggactgaacc tcgattgtcc cgacgatgcg ccccatcgtc gccatcggca cgaccagcga
     6961 cgactgaggc cgcagcccgt tgtccgggcc tacgagcacg cccaactgcc ccaggccctt
     7021 tcgcttcacc tcccagtagt cgttcgtgat gacgacgtgg ccggttctta cggcgcggct
     7081 gttcggcccc tcggccgtca cgggcatggg cggcaggccc gtcacgtcaa cctcctggcc
     7141 gtcgccccac gcgtactgcg ccatgcgcac gtcgcggtct gcgtcgtaga gcgagatgaa
     7201 gatgcctatg caggggacgg agacgtgcgc gaagtccttg aggtctcgga atatcgtgag
     7261 gtggtcgcgc gccgtgccga gcgactcggc caggtgcgtg aggcggtgca gcagcgtctc
     7321 gtactcgcgc acggcccggc gctcggcgtc gagcagcgcc tcctccgcgc gcacgcgctc
     7381 ggttatgtca accgagaggc cgacgacgcc gacgagtcgg ccctcggcgt ccaagatggg
     7441 cgagtctgtg acgtgcgcgg ggaaggtcga gccgtcgcgg cggcgcacga ggaactcgcc
     7501 cgaccaggac ttgccctccg tcagccgcgc cattatctcg gccgcctgct cgtgcgaggc
     7561 ggcggcgggc gtcacctcca tcacgtttcg gccgacggcc tcggcggcag accagccgta
     7621 gagcagctcg gcgtggcggt tccagtaggt tatggtgccg gagaggtctg tggctatgac
     7681 ggcctgctcg acggcgtcga ggagctgcgc gcgcaggtgc acgccgccct cggcacgcag
     7741 cctgtctgcg cgctcccgct cgcggctctc tcctctctct tcagtggggg gcattcggaa
     7801 actcacggcc gggccggagg cccttccccg gccccggctt ttggctccgg gcattatcat
     7861 ccccgaagct cagttagcca aatgaaagaa cacgtcctcg aagggcgcgt cggggatgga
     7921 tgtcgcgcgg cgcagctcgt cgggcgcgcc ttcggcgacg agcaggccgg ctcgcattat
     7981 accgacgcgg tcggccacgc gctcgacgaa gctcatcacg tgggaggaga tgacgaaggc
     8041 tcggccggcg tcgcgctcgc gctcgacgcg caggcgcagc ttcctcatca tctcaacgtc
     8101 taggccgttc aggggctcgt ccagcaccaa cacggagggc gagccgagga aggcagccgc
     8161 gagcccgagc ttcttcctca tccccaacga gtagccgccg acccacttgt ccgcgacgcg
     8221 cgccagctcg aagaactcga cctcggcggc gactcccccg gcttcagccc ccttcaggcc
     8281 cgcgaccagc gaaaggtact cgcgccccgt caaacgctgg tagaagtaaa gctcctcggg
     8341 taggtagccg agccggcgct tcgcctcctg cgcgcgcttc ttcatgtcct ggtcgcagac
     8401 cgtgacggag ccctcgtccg gcaccgtcag tcccacaatc atgcggatca gcgttgactt
     8461 ccccgccccg ttcgcgccca gcagcgcgta ggcctcgccc gcgccgacgc gaaggctcac
     8521 gccgcccacg gccaggacct cgccgtagcg cttaacagcc gcctcgacga cgatcaggcc
     8581 ctccgcgctc tgcgcatctt cccccaactc tttcagacgc cctcgctgtt caggtgcaag
     8641 tgcgcgcggt ggtggccgcg catcttcagg tgatccacgc cgagcccgta gatggcgagc
     8701 cccatcggcc acaggaacgc cacgaacccg ccggccgcga gccccgcgca cgccatcagc
     8761 accagcgcca ggcccggctg ctccggcatc tcgaaggcga gcgagcccgc gagcgtgctc
     8821 actatccacc agagccagac gcactccgcg agcatcggca cgacgtaaga cgcgggcgcg
     8881 gcgccgcaga gcgccccggc cgcccacgcc gcgagcgacg ccggcaaagt taccgcgcgc
     8941 gcgtacaaaa gcttcgcgcg ccacgcgtca gcgccgcgcg ccccgaccgc gcgctccagc
     9001 cagaagtgcg gcaactggtg cgcgacgagc acggggacga gcgaggcgag cgcgacgcaa
     9061 gcgagcaccg acgcgaactt gaccgccagc acgcccggca gccacgtcgc ctcgaagagc
     9121 gacgacggca ccgacccttc cggcagcagc cccgtcgtca acgccgccac cagcacgatg
     9181 acgaagagcg ccgccagccc cgccgcgaca tagacggccg aagagaagcc gcgcagcgtc
     9241 aactgcaagt cgcgcgcgag ctgcgccgcg accgcctccg acccgcacgc gcgccgcgcc
     9301 acgcgttcac ccagtctccc ccatgagtcc ttcgcgccca gacgcttcgc gtactccaaa
     9361 tccgaagcgc gccacctctc gtgcagcgcg aagaggagca acagcgccgc gcccgcgagc
     9421 gcgattgacc cggccacgag ccacgcgcgg cctaactccg gcgccgccca cggcttcaca
     9481 gcgacgaaca gcagcagccc cgccgccacg gaacacgccg cgaacatcaa gagagccact
     9541 gcggcgtgcg gccgctcgcg cctgtggccc cagtgaaccc actgaacggc agcgagcgcc
     9601 tggcccgagg ccgtcaccgc gacgaagcac gcgagcaggg ccgggagccg cgcgtcccac
     9661 acgcccccgc ccgcgagcga tcgcgcgacg acggccgcgg ccgccacgcc cgacacgcgc
     9721 gcggccctcc gcacgagcgc agccgcgagc tgcgcgcgcg ccgagacggg cagcgcgtcg
     9781 aagagagact ccggccgccg caggtggtaa atctccgcga ccgcgcgcga cacgccgagc
     9841 gccagcaggc acgccgccgc cgctacggcc agccccgccg cgacctcgtc cgacggtcgc
     9901 cagtccgagt cc
//
LOCUS       DASPKR010000246         5471 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1066364, whole genome shotgun sequence.
ACCESSION   DASPKR010000246 DASPKR010000000
VERSION     DASPKR010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5471)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5471
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1066364"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..660
                     /locus_tag="VD968_06735"
     CDS             <1..660
                     /locus_tag="VD968_06735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14119.1"
                     /translation="AWSYLCLRLAAYLKCEKGLRTGYTRKTYHVLIFMTAVAAQAVWG
                     LPGVFVLGSAVTLVLAYAVARGAGHPLYEAIAREQDAPRRTYYVVVPYFATLLGGLAS
                     NLMFGPVSVFGYLVGGVGDAAGEPAGARWGRHRYPAPSFTGVKTTRSVEGSAAVLLGS
                     LAALVAGLAVSPQFGVSARTLAPLPAVAAACALVEAVSPHGWDNATMQLAPSALVSAL
                     L"
     gene            715..2040
                     /locus_tag="VD968_06740"
     CDS             715..2040
                     /locus_tag="VD968_06740"
                     /inference="COORDINATES: protein motif:HMM:NF013715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HYE14120.1"
                     /translation="MAETGTAAKRAGRVLRRGAHRVRRSVGARRGRLLAYLAVLGPGI
                     IAANAGNDASGIATYSSVGAKYGYTLLWVFAPMMLSLGLVQEMCARLGVVTGKGLADL
                     IREQFGVRWTALVMLALLVANGGVIVSEFVGIAAATELFGVPRYFSVPLAAAGIWWIV
                     VKGSYQRVERIFLLMSLIFFGYVASAFLARPDWGQVGSEFVRPSFSFERDYLFMLMAL
                     IGTTITPFMQVFVQSSVVEKGATTEDYGLTRADVWTGTVFAVAIAFFIVVSTAATLYR
                     PGAPVELESAAEAASALAPVAGPYAEALFAVGLFGAAMLAVGVLPLATAYSISEALGF
                     EKGVSRSFREAPIFLGIFTFLIAAGAFVALVPHLPVIRVLLTTQFINGLLLPVILVAV
                     LRLASDRELMGAYANGRLYNTAAWLIVLVVSALSLLLVLTTLFPGIAGQ"
     gene            2073..3515
                     /locus_tag="VD968_06745"
     CDS             2073..3515
                     /locus_tag="VD968_06745"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HYE14121.1"
                     /translation="MKRPRLRNQITTPLMAAFVFGVALYLLYQFRPAPPAAGAPPEQI
                     MSFAAREWALVLAGLAFWLSLAFVAVRALNEFVFFVFRKRKGYEAPSLMRDIFSLVCY
                     VTALAIILKFHFENLSFGALLSGSALLGIILGLALQDTLGNLFAGISLHADKPFQVGD
                     VVTVGQWTGVVESITWRAVKIKTFQNHTVLVSNATIAKENFEVCPRDNANARIVFFNA
                     VYTDSPVKVIHVVREAIRECENVLRYMTPVVRIRGLGADGVDYEVKYWLSDYSRYNDT
                     DALVRQRIWYAFRRNGLTFAYPTRTLYVERPSHSRRDGHTTETLTERLSAVDIFSPLS
                     ADELNRLASGAKGRVFAPGETIIREGDSGSSMFVVHRGSVDVRVGADGQQRTIKTLAE
                     GDFFGEMALLTGEPRTANVIAAEETEVLEIGHDAMRRLFETNPDLVEALSHTINERRA
                     GLAASASPATEQEGEEDSLLDKIKRFFRLD"
     gene            complement(3524..4513)
                     /locus_tag="VD968_06750"
     CDS             complement(3524..4513)
                     /locus_tag="VD968_06750"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HYE14122.1"
                     /translation="MADREKFGAYAAWAAVCFFWGTTYLAIRVGLESFEPMLFAGLRF
                     LVAGGVLLLVMGRQQGARLPLGREWFDLGVVGLLLLGVGNGAVVWAEQWVPSGMAALL
                     VAVSPFWAAGLERLREGGERVGPRGLMGIAVGFGGLALLLGPQLFGAELGGKYFLGVV
                     AIQIGCFTWQAGSVYAKGRPTGVSPLMAAAVQMLWAGAALTLLGTLLGEWSGMRFSAR
                     SAGALAYLVVFGSIVAYSAYTYAIQKLPLPLVSTYSYVNPLVALALGWAVLGEALGSR
                     ELAAATVILLGVALVKTSPKELARLLARLRERRVRGEGGRAEESPKMVDARAA"
     gene            complement(4515..4997)
                     /locus_tag="VD968_06755"
     CDS             complement(4515..4997)
                     /locus_tag="VD968_06755"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HYE14123.1"
                     /translation="MLDEKDAKILELLQQDGRMTNVELARVVELTPSAMLERVRKLEE
                     RGFIKGYTALLDPHDLGLGLLAFVFMRVDDRDDIIGSAESTAEALAALPSVLELHHLA
                     GEDCFLLKVRARDTDDLYRVLKEEFGQFKNVRGTRTTIVLKTVKESVRLPLRRERAGE
                     "
     gene            5283..>5471
                     /locus_tag="VD968_06760"
     CDS             5283..>5471
                     /locus_tag="VD968_06760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14124.1"
                     /translation="MSITRYDPFRDLRTLQDEVNRLFSSNFMRSFGDEGIARGAWAPN
                     VDIYEGKDEIVLEAELPGM"
BASE COUNT          880 a         1969 c         1665 g          957 t
ORIGIN      
        1 gcgtggtcgt acctgtgcct gcggctggcg gcgtatttga aatgcgagaa ggggttgagg
       61 acgggctaca cgcggaagac ttaccacgtg ctgatattta tgacggccgt cgcggcgcag
      121 gccgtgtggg gcctgccggg cgtgttcgtt ctcggctcgg ccgtgacgtt ggtgctggcc
      181 tacgcggtcg cgcgcggcgc gggccacccg ctctacgagg ctattgcgcg cgagcaggac
      241 gcgccgcgtc ggacttacta cgtcgtcgtg ccgtacttcg cgacgctctt gggcgggctc
      301 gcgagcaact tgatgttcgg ccccgtgtcg gtattcggct acctcgtcgg cggcgtcggc
      361 gacgcggccg gggagccggc cggcgcccgc tggggcaggc accgataccc ggcgccgtct
      421 ttcacgggcg ttaagacgac gcggagcgtt gagggctccg cggcggtgct cctgggctcg
      481 ctcgcggcgc tcgtcgccgg gctggccgtg agcccgcagt tcggcgtctc ggcgcggacg
      541 ctcgcgcctc tgccggcggt cgccgccgct tgcgcgctcg tcgaggccgt ctcgccgcac
      601 ggctgggaca acgcgacgat gcagctcgcg ccgtcggcgc tcgtctcggc gctgctctag
      661 cgcggcgcgc tttcttagac ttcgattctc ttatgtcgga cggagaccca ccggatggcc
      721 gagactggca cagccgcgaa gagggcgggg cgcgtgctgc ggcgcggcgc gcaccgcgtg
      781 cgccgctcgg tgggcgcgcg gcgcgggcgc ctgctcgcat acctcgccgt gctgggcccg
      841 ggcatcatcg ccgccaacgc cggtaacgac gcgagcggca tcgccaccta ctcctcggtc
      901 ggcgccaagt acggctacac gctcctgtgg gtcttcgccc cgatgatgct gagcctcggg
      961 ctcgtgcagg agatgtgcgc gcgcctcggc gtcgtaaccg gcaaggggct cgccgacttg
     1021 atacgcgagc agttcggcgt gcgctggacg gcgctcgtga tgcttgcgct cctcgtcgcc
     1081 aacggcggcg tcatcgtctc ggagttcgta ggcatcgccg ccgccacgga gcttttcggc
     1141 gtgccgcgct acttctccgt gcctctcgcc gcggcgggca tctggtggat agtcgtcaag
     1201 ggctcttacc agagggtcga gcgcatcttc ctgctgatgt ccctgatctt cttcggctac
     1261 gtcgcgtcgg ccttcctcgc ccgccccgac tgggggcagg tcgggagcga gttcgtgcgg
     1321 ccgagcttca gcttcgagcg cgactacctc ttcatgctca tggcgctaat cggcacgacg
     1381 ataacgccgt tcatgcaggt cttcgtgcag tcgtccgtgg tcgagaaggg ggcgacgacc
     1441 gaggactacg gcctcacgcg cgccgacgtt tggactggca cggtcttcgc cgtcgccata
     1501 gccttcttca tagtcgtctc gacggcggcg accctctacc gccccggcgc gcccgtggag
     1561 cttgagtcgg cggccgaggc cgcgagcgcg ctcgcgcccg tcgcgggccc gtacgccgag
     1621 gcgctcttcg ccgtcggcct cttcggcgcg gcgatgctgg cggtgggcgt gctgccgctg
     1681 gctacggcct actcgataag cgaggcgctc ggcttcgaga agggcgtgtc gcgctcgttc
     1741 cgcgaggcgc ccatcttcct cggcatcttc accttcctca tcgccgccgg ggcgttcgtc
     1801 gcgctcgtcc cgcacctgcc ggtgataagg gtgctgctga ccacgcagtt cataaacggg
     1861 ctgctgctgc ccgtcatact cgtcgccgtg ctgcggctgg cctcggaccg cgaattgatg
     1921 ggtgcgtacg ccaacggccg gctctataat actgccgcct ggctcatagt ccttgtggtc
     1981 tcggcccttt cgctcctgct cgtcctgacg acgctcttcc ccggcatagc cgggcagtga
     2041 gaaagtttac cgcgacgcgg aagccgactg ccgtgaaacg cccgcgactc agaaaccaga
     2101 taacgacgcc gctcatggcg gccttcgtct tcggggtggc gctctacctg ctctaccagt
     2161 tccgccccgc cccgccggcg gccggcgcgc cgcccgagca gatcatgtcc ttcgcggcga
     2221 gggagtgggc tctcgtgctc gcgggcctcg ccttctggct gagcctagcc ttcgtcgccg
     2281 tccgcgccct taacgagttc gtcttcttcg tcttccgcaa gcgcaagggc tacgaggcgc
     2341 cgagcctgat gcgcgacatc ttctcgctcg tctgctacgt caccgcgctc gccatcattc
     2401 tcaagttcca cttcgagaat ttgtctttcg gtgcgctgct gtcgggctcg gccctgctcg
     2461 gcatcatcct cggcctcgcc ttgcaggaca cgctcggcaa cctcttcgcc ggcatctcgc
     2521 tccacgccga caagcccttc caggtgggcg acgtggtcac ggtcgggcag tggacgggcg
     2581 tggtcgagag catcacctgg cgcgccgtca agataaagac gttccagaac cacacggtgc
     2641 tcgtcagcaa cgcgaccatc gcgaaggaga acttcgaggt ctgcccgcgt gacaacgcca
     2701 acgcccgcat agtcttcttc aacgccgtct atacggactc gcccgtcaag gtcatacacg
     2761 tcgtgcgcga ggccatacgc gagtgcgaga acgtcctgcg ctacatgacg ccggtcgtgc
     2821 ggatacgggg cctgggcgcc gacggcgttg actacgaggt gaagtactgg ctctccgact
     2881 actcgcgcta caacgacacg gacgcgctcg tgcgccagcg catctggtac gccttccgcc
     2941 gcaacggatt gaccttcgcc tacccgacgc gcacgctcta cgtggagcgg ccgtcgcact
     3001 cgcggcgcga cggccacacc accgagaccc tgaccgagcg cctctcggcc gttgacatct
     3061 tctcgccgct ctcggccgac gagctgaacc ggctggcctc gggcgccaag ggccgcgtct
     3121 tcgcgcccgg cgagaccatc atacgcgagg gcgacagcgg ctcttccatg ttcgtcgtcc
     3181 accgcggaag cgttgacgtg cgcgtcggcg ccgacgggca gcagcgcacc atcaagacgc
     3241 tcgccgaggg cgacttcttc ggcgagatgg cgctcctcac cggcgagccc cgcaccgcaa
     3301 acgtcatcgc cgccgaggag accgaagtcc tcgagatagg ccacgacgcc atgcgccgcc
     3361 tcttcgagac caaccccgac ttagtcgagg cgctcagcca caccatcaac gagcgtcgcg
     3421 ccggcctggc cgccagcgcc tcgcccgcca cagagcagga gggcgaggag gattcactcc
     3481 tcgacaagat caagcgcttc ttccgcctcg actgacggca gcctcaggcc gcccgcgcgt
     3541 caaccatctt cggcgattct tcggcccgcc ccccttcacc ccgcacgcgc ctctctctca
     3601 ggcgggcgag cagccgcgcc agctccttcg gcgaagtctt aaccagcgcc actcccagca
     3661 gtatgaccgt cgccgccgca agctccctcg agcccaaggc ctcgcccagc acggcccacc
     3721 cgagcgcgag cgccaccaac gggttcacgt aagagtaggt cgagactagc ggcagcggca
     3781 gcttctgtat cgcgtaggtg taagcgctgt aggccacaat cgagccgaac acgacgaggt
     3841 aggcgagcgc gccggcgctc ctcgcgctaa agcgcatccc cgaccactcg cccaaaagcg
     3901 tcccgagaag ggtcagcgcc gcgcccgccc aaagcatctg cacggccgca gccatcagcg
     3961 gtgacacgcc cgtcggccgc cccttcgcat agaccgagcc cgcctgccac gtgaagcacc
     4021 ctatctgtat tgccacgacg cccaggaaat attttccgcc cagctccgct ccgaacagtt
     4081 gcggccctag aagcaacgcc aacccgccga agcccacggc tatccccata agcccgcgcg
     4141 ggccgacccg ctcgcctccc tcgcgcagcc tctcaagccc cgccgcccag aacggcgaga
     4201 cagccacgag cagcgccgcc atcccgctcg gcacccactg ctcggcccac acgaccgccc
     4261 cgttccccac gcccaaaagg agcagcccca ctacgcccag gtcaaaccac tcccgcccca
     4321 agggcaagcg cgcgccctgc tgccgcccca tcacgagcag cagcacgccc cccgccacga
     4381 ggaagcgcag ccccgcgaag agcatgggct cgaagctctc cagccccacg cgtatcgcga
     4441 ggtacgtagt cccccagaag aaacagacgg ccgcccacgc cgcgtaagcc ccgaacttct
     4501 ccctgtccgc catctcactc acccgccctt tcccgccgca gcggcagccg caccgactcc
     4561 ttcacggtct ttaggacgat agtggtgcgc gtccccctca cgttcttgaa ctgcccgaac
     4621 tcctccttca gcacacggta gaggtcgtcc gtgtcgcgcg ccctcacttt cagcagaaag
     4681 cagtcctcgc ccgcgaggtg atgcagctcc aacacggagg gcagcgccgc cagcgcctcg
     4741 gccgtgctct cggcgctccc gatgatgtcg tcgcggtcat ccacgcgcat gaaaacgaag
     4801 gccagaaggc cgaggcccaa gtcgtgcggg tcgagcaggg ccgtgtaacc ctttataaac
     4861 ccacgctctt cgagcttcct gacgcgctcg agcatcgccg agggcgtgag ctcgacgacg
     4921 cgggccagct cgacgttcgt catgcgcccg tcctgctgta aaagctcaag aattttcgcg
     4981 tccttttcgt ctaacacgat tttcggcacc tccgggccgg gccttcaggc atttaattta
     5041 catttatacg cccaatcaag cttaagagtt cacataataa ggtgagtagc tcaatttgtc
     5101 aaattttatt aactcacagg actgagcctc caaataagac gcaaaaattc ttgggcctat
     5161 agagacttga caaagaggga ctcaatattt attattagcg cgtactcacg gcggaggttt
     5221 gatcccgaac cggtttcggc cgtgggggaa ttcaaactat cgaagctttt cggaggttaa
     5281 tcatgagcat cactcgctac gacccgttcc gcgatctcag gactctccaa gacgaggtca
     5341 accgcctctt ctcttccaac ttcatgcgct cgttcggcga cgaaggcatc gcccgcggcg
     5401 cttgggcgcc caacgttgac atctacgagg gcaaggacga gatagtgctc gaggccgaac
     5461 tgcccggcat g
//
LOCUS       DASPKR010000247         4187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_937284, whole genome shotgun sequence.
ACCESSION   DASPKR010000247 DASPKR010000000
VERSION     DASPKR010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4187)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4187
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_937284"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..401
                     /locus_tag="VD968_06765"
     CDS             <1..401
                     /locus_tag="VD968_06765"
                     /inference="COORDINATES: protein motif:HMM:NF025033.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYE14125.1"
                     /translation="EESRGFDEIRSVRGDARRLPFATAAFDYVLCSLFTHHFRDAELV
                     PLLAEMARVARRRLFVIDLHRHPAAYYFYTTAGRLFLRSPLVREDGALSILRGFAPEE
                     LRRFASLAGLRRVRVERRFPYRLVLSASAA"
     gene            412..1593
                     /locus_tag="VD968_06770"
     CDS             412..1593
                     /locus_tag="VD968_06770"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYE14126.1"
                     /translation="MSEFDVIVIGGGPGGAGAAIRLAQGGARVLLAERERFPRAKLCG
                     EFISPECLRHFARLGVLAGVRASGGVEVSETVFYAPSGRGVGVPSGWFGDGSRAALGL
                     SRAEMDRRLVERAREAGAVVVEDAACSGVLAEGGRVRGVRLAVKGAAAREHRASVTID
                     ATGRARAVARHVACGGAGKSRAAYVAFKAHLEGARAAAGACEIYFYPGGYGGLSPVEG
                     GRNNLCFIARAEDVRARGSDAERVVCEILMKNRRAAHTLAGASVCGRWLAVSLESFGR
                     AEPAPAEGLLAVGDAAAFIDPFTGSGMLMALESGELAARTILERLDTAGDNLCELSRE
                     YAARYDERFDTRLRVCRLLRRAAFAPAPLAELAVLTLGASDGARRRLARATRGRRRAP
                     A"
     gene            1642..2154
                     /locus_tag="VD968_06775"
     CDS             1642..2154
                     /locus_tag="VD968_06775"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HYE14127.1"
                     /translation="MTLTVRVETDDDRAAIYAVNEAAFGRPDEARLVDALRRAARPYV
                     SFVAADGGRVVGHILFSPVTIESGGAASAAMALAPMAVLPELQNQGVGSRLVGRGLDE
                     CRRLGHALVFVVGHPAYYPRFGFEPARPKGFTCEFPVPDEAFMVAELSPGAAAGRAGL
                     VRYRPEFGGV"
     gene            2496..>4187
                     /locus_tag="VD968_06780"
     CDS             2496..>4187
                     /locus_tag="VD968_06780"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE14128.1"
                     /translation="MSASPRRWLPTAYRLALACALALSFGAAALAQADATSATLTGFV
                     KDPAGAVVAGATVTARNPATNETRTTTTNDEGFYQLVQLTPGTLEITVEAANFKRAVV
                     PAVTVTVGQRAGLDISLEIGQITDVVTVTGATTELIETGKTNVSNTIEQVRIDNLPIN
                     QRDYINFTLTTSTVTRDNGRPIGPAPTSGLNFGGQRGRSNLVQVDGADNTDNSVNAAR
                     STVSQEAVQEFQVVTNSFAPEFGRTAGGVVNVVTKSGTNDLRGNVFGFIRHKSIQARN
                     AFAPVIDNDPGKKPPFTRAQYGATLGGPLDRDRTFFFAAFEQRKRQESGFFTSDVVQG
                     LTASATIPAIPGINPIARTFTRLTAAQAAFVNTLVASGVPANICAARAYAFLASSGGN
                     TGLTGSNPLTSPNDGSACPAISPVTGPTTAIGPRFFLTGAPVPVSQNAFRPLLALDRV
                     FPISEDTTFTSVRGDHQINSEHQLTMRFGYNPSDITGIQVESQNQSLGQNDFSRTGIQ
                     TLRDSSFVTTLHSTLAPTVVNEGRFSFSSRRATFTSQNGQATAYNISGVAFIGREL"
BASE COUNT          624 a         1535 c         1387 g          641 t
ORIGIN      
        1 tcgaagagtc acgcggcttc gacgagattc gctcggtgcg cggcgacgcg cgccgcctgc
       61 ccttcgccac ggccgccttc gattacgtgc tctgctcctt gttcacgcac cacttccgcg
      121 acgccgaact cgtcccgctc ctcgccgaga tggcgcgcgt cgcgcgacgc cggctcttcg
      181 tcatagacct tcaccgtcac cccgccgcct actatttcta cacgaccgcc ggccgcctct
      241 tcctccgcag cccgctcgtc cgcgaagacg gcgcgctctc catcctgcgc ggcttcgcgc
      301 ccgaggagct tcgccgcttc gcctcgctcg cgggcttgcg gcgcgtgaga gtcgagcgcc
      361 gattccccta ccggctcgtc ctgagcgcgt cggccgcgtg agagttttcg agtgagcgag
      421 ttcgacgtaa tcgttatcgg cggcgggccc ggcggggcgg gggccgctat caggctcgcg
      481 cagggcggcg cgcgcgtgct tctcgccgag cgcgagaggt tcccgcgcgc gaagctgtgc
      541 ggcgaattca tctcgcccga gtgcctcagg cacttcgcgc ggctcggcgt gctcgccggc
      601 gtgcgcgcgt cgggcggcgt cgaggtgagc gagacggtct tctacgcgcc gagcggcagg
      661 ggcgtcggcg tgccgagcgg ttggttcggc gacggctcgc gcgcggcact gggcctgagc
      721 cgcgccgaga tggacaggcg gctcgtcgag agggctcgcg aggccggcgc cgtcgtcgtc
      781 gaagacgcgg cctgctcggg cgtgctcgcg gaaggcggcc gggtgcgggg cgtgcgtctg
      841 gcagtcaagg gcgccgccgc gcgcgagcac agggcgtctg tgacgattga cgcgacgggg
      901 cgagcgcgcg cggtggcgcg tcacgtcgcg tgcggtgggg cggggaagag ccgcgccgcc
      961 tacgtcgcct tcaaggcgca cctcgaagga gcgcgcgccg cggcaggcgc gtgcgaaatc
     1021 tatttttacc ccggcggcta cggcggcttg agccccgtcg agggcgggcg gaacaacctc
     1081 tgcttcatcg cccgcgcaga ggacgtgcgc gcgcggggga gcgacgccga aagggtcgtg
     1141 tgtgaaattt tgatgaagaa caggcgcgcg gcgcacacgc tcgcgggcgc gagcgtgtgc
     1201 gggcgctggc tcgccgtctc gctcgaaagc ttcgggcgcg ccgagcccgc gcctgccgag
     1261 ggcctgctcg ccgtcggcga cgccgcagcc ttcatagacc ccttcacggg cagcggcatg
     1321 ctcatggctt tggagagcgg cgagcttgca gcgcggacga ttctagaacg gctcgacacg
     1381 gcgggcgaca acctctgtga actctcgcgc gagtacgcgg ctcgctacga cgagcggttc
     1441 gatacgcgcc ttcgcgtctg cagactgctg cggcgcgcgg ccttcgcgcc cgcgccgcta
     1501 gccgagttgg ccgtgctcac gctcggcgca tccgacggcg cccgccgacg gctcgcgcgc
     1561 gccacgcggg gccgccgccg cgcgccagcc tgagaccgtt cacgcgcggc cgtgcctgtg
     1621 ccgtacttac cgttaactgt cgtgacgctt accgtaagag ttgaaaccga cgacgaccgg
     1681 gccgcaattt acgccgtcaa tgaggcggcg ttcgggcggc cggacgaggc gcggctcgtt
     1741 gacgcgctga gacgagcggc gcgcccttac gtctcgttcg tcgcggccga cggagggagg
     1801 gtagtcggcc acatcctctt cagccccgtc acaatcgagt cgggcggcgc ggcgtcggcc
     1861 gcgatggcgc tcgcgccgat ggccgtgctg cccgagttac agaatcaagg cgtcggctcc
     1921 cgcctggtcg ggcggggctt agacgagtgc aggcgcctcg gccacgcgct cgtctttgtc
     1981 gtcggccacc ccgcctacta cccgcgcttc ggcttcgagc cggcgcgccc gaaggggttc
     2041 acctgcgagt tccccgtgcc ggacgaagcc ttcatggtcg cggaactatc gccgggcgcc
     2101 gccgccgggc gcgccggcct cgtgagatac cgacccgagt tcggcggcgt gtagtgccgt
     2161 cgcagtcggg gtttttaggc gcctgcctta agttaaggtt cttgccaaag gccggttttt
     2221 gcggtacaaa gtcgggcgca agtgtcgcag tcggcaaggg attgctcctc gatggcgctc
     2281 gaccagagcg cgaagccgct gacctcctaa acaaagcgct tgatagacag cacagactcc
     2341 ctgcgcgtgc cggcgttgcc cgtgagaagc ttgtgacccg cagcgggcct taccgaagcc
     2401 cggccgggcg gcgccgcgcc cccggcctga gccctcggcg cgcgcgccgc gaccgaagcg
     2461 tataagcctt taatttgctt caaggagaaa agaaaatgtc tgcttcccct cggcggtggc
     2521 tcccgaccgc ataccgtctc gcgctcgcgt gcgcgctcgc gctatccttc ggcgccgcag
     2581 cgttagcgca ggcagacgcc acttcggcca cgcttaccgg cttcgtcaaa gacccggcgg
     2641 gcgccgtcgt cgccggcgcg accgtcacgg cgcgcaaccc cgcgacgaac gagacgcgca
     2701 cgacgacgac gaacgacgag ggcttctacc agctcgtgca gctcacgccc ggcacgctcg
     2761 aaatcacggt cgaggccgcc aacttcaagc gcgccgtcgt tccggccgtc accgtcacag
     2821 tggggcagcg cgccggccta gacatctcgc tagagatagg tcagatcacg gacgtcgtca
     2881 ccgtcacggg cgccaccacc gagctcatcg agacgggcaa gaccaacgtc tcgaacacca
     2941 tcgagcaggt tcgcatagac aacctgccca tcaaccagcg cgactacatc aacttcaccc
     3001 tgacgacctc gaccgtgacg cgcgacaacg ggcgccccat cggcccggcc cccacctcgg
     3061 gcctgaactt cggcggccag cgcggccgct cgaacctcgt gcaggttgac ggcgccgaca
     3121 acaccgacaa ctccgtcaac gccgcgcgct ccacggtctc gcaggaggcg gtgcaggagt
     3181 tccaggtcgt caccaactcg ttcgcgccgg agttcgggcg cacggccggc ggcgtcgtca
     3241 acgtcgtcac caagtcgggg acgaacgacc tgcgcggcaa cgtcttcggc ttcatacgcc
     3301 acaagtcaat acaggcgcgc aacgcgttcg cgcccgtcat tgacaacgac cccggcaaga
     3361 agccgccctt cacgcgcgcg cagtacggcg ccaccctggg cgggccgctc gaccgcgacc
     3421 gcaccttctt cttcgccgcc ttcgagcagc gcaagcggca ggagtcgggc ttcttcacct
     3481 cggacgtggt gcagggcctg acggcgagcg cgaccatccc ggccatcccc ggcatcaacc
     3541 ccatcgcgcg caccttcacg cgcctgacgg cggcgcaggc cgccttcgtc aacacgctcg
     3601 tcgcctcggg cgtccccgcc aacatctgcg cggcgcgcgc ctacgcgttc ctcgcctcgt
     3661 cgggcgggaa caccggcctg acgggctcca accctctgac gagccccaac gacgggagcg
     3721 cctgcccggc catctcgccc gtcacggggc cgacgacggc catcggcccg cgcttcttcc
     3781 tgacgggcgc gcccgtcccc gtcagccaga acgccttccg cccgctcctc gccctcgacc
     3841 gcgtcttccc catctcagag gacacgacgt tcacctcggt gcgcggcgac caccagatta
     3901 actctgagca ccagctcacg atgcgcttcg gctataaccc gtcggacata acgggcatac
     3961 aggtcgagtc gcagaaccag tctttgggcc agaacgactt ctcgcgcacg ggcatccaga
     4021 cgctgcgcga ctcgtcgttc gtcaccaccc tgcactcgac gctcgcgccg accgtggtca
     4081 acgaggggcg cttcagcttc agctcgcgcc gcgcgacctt cacgtcgcag aacgggcagg
     4141 ccacggccta caacatctca ggcgtcgcct tcatcggccg cgagctc
//
LOCUS       DASPKR010000248         8000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1066421, whole genome shotgun sequence.
ACCESSION   DASPKR010000248 DASPKR010000000
VERSION     DASPKR010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8000)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8000
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1066421"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            198..1481
                     /locus_tag="VD968_06785"
     CDS             198..1481
                     /locus_tag="VD968_06785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14129.1"
                     /translation="MRVLIINRVLAKALPVVLILLGPFAVGALQLLSLWGVALAAAAA
                     VALFAFASGSLRAKKATLVLASAALAVTASDLGLRLLPLVPNDMIERWPRLPIIFRYV
                     PDAHFEGYRFNDLSRMAGVIEWREYKRVRLVTDSEGFRNERADAARPLDVIVLGDSFG
                     AGAVSQEHTWSNILASKYGLSTYNLSTPASGPWQQYVNLLAEKDRLSAGEGTLLVWQL
                     FTGNDLEDYYGPLEPGEIPWCGPLAAWVNRANSFRGRSPVRFLLQRREPSRDVIPLDF
                     INGRKLLFYRPYVEAAPRTAEQVVGHVSYERFRATVGAVKGLADAQRLRLAVVLVPSK
                     EEVYEWAWRGATPWSTRPEPSGFAVALARVCEEEGIPLLDLKPHMVRESRRAFEESGQ
                     LFYWYDDTHMSTAGNVLSASVIHDALILGRVRPAE"
     gene            1524..3002
                     /locus_tag="VD968_06790"
     CDS             1524..3002
                     /locus_tag="VD968_06790"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HYE14130.1"
                     /translation="MALSAASAVLTQAVGLARSVVLARLLAPDDYGLFGMALTVSGAL
                     TVLTSFGLDFSLVARKFSGEGELEKHLDTVWTAELLRKLLLALLVLAAAYPTARFYGS
                     AELLPVMLALAAAPLIQGFHNIGLVMQQKRVDFRRVVWLEQLTNLSSTLAAVGIALFW
                     SRDVWALVLGQIASAVAGVALSYALDPYRPRPRLDRRALREALGFGKHVFVVGVAAYV
                     TTTADNVVVGKSLGAAALGLYVLAYNLATIPVGVAARVGGTLIPAYVEAGAQERGGQQ
                     AGGQQVGERVERGFARAFAAAAALLAVVSALLLLLADEVVLLLYGAKWSGAAPALRVL
                     SVVCFCRGLMQVAAPLVLSARGPAPEARAKVFESLFFLAILYPLTRAYGLVGAASAGA
                     LVYVPTLFVRLRLVRLVSRRAHAEAVGALVRSLAAGAVGTALGALALRLFDAPLPRAA
                     AGASTATAATLLLLLATQPALRAEAADFAGWLLRPREPRRAP"
     gene            3039..3587
                     /locus_tag="VD968_06795"
                     /pseudo
     CDS             3039..3587
                     /locus_tag="VD968_06795"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            3632..4171
                     /locus_tag="VD968_06800"
     CDS             3632..4171
                     /locus_tag="VD968_06800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14131.1"
                     /translation="MSSKATKAGGGGQQQKRSSGRPSKKDQIIALFLSGMGEVEDIAV
                     ITGSRASYVGSVLQEAGLVSGYFDLYTSTSHPQNIYSKFFAGKLGFRDEEAARQSVEL
                     IDRLYRQFEFAADRAGQHHALSMALTMFDRARWTGKGREAEVFREWLTARLQEAVLSP
                     DDPSQVEGDSIENVPDDLS"
     gene            4266..5654
                     /locus_tag="VD968_06805"
     CDS             4266..5654
                     /locus_tag="VD968_06805"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HYE14132.1"
                     /translation="MKNLRRVFPALLLLCALPAAARADRVDDLVREQMRLRHVPGLAL
                     AVIRDGRVVKERGYGLASVELNAPVTPATVFEIGSVSKQITAAAVMLLVEEGKVGLDD
                     PVGKYLPEAPAEWGGVTVRHLLTHTSGLKNYTGLAGFELTERLKRDEFIRRIAAHPLA
                     FAPGEAHSYGNTNYNLLGFVVEAASGRPYWEFVQERIFRPLGMTSTADRDPRNVIPNR
                     AAGYEWEGGRLIGRDYDLTDVFSAGAIVSTVRDLVRWDAALEGERLLKRSSLELVWSP
                     VRLNGGKSYPYGFGWYIESLRGHRVVRHNGQTAGFAASIARYTDDRLTVIVLTNLGTI
                     GLAGRINQQVAKLYVPALSLRELGGRPDPDARLTGRLRDALAGLLSGRPSAEAFTPER
                     FKAVTSESAKGNWQTLASYGAASALTFVEADASAPRAFRYKAALGRHLLLLRFALTED
                     GKISELAVEEEE"
     gene            5651..7285
                     /locus_tag="VD968_06810"
     CDS             5651..7285
                     /locus_tag="VD968_06810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14133.1"
                     /translation="MSAGAHVGRAGRLWPALAAAALVGLYAAPRLRGLTDSCLWFDEL
                     FGVHAARHDWGGLWRFVAADLIHPPLFYALLKIWAAAGGESLLWLRLFPALTSVAALV
                     PFLLLARELRLPRAAAGLALLLAAANGYLIKYAQEVRMYGLLLLLSLFSLWLLARLLA
                     ARGAGPARRHAALFAANLLLAYTHYYGWLVVAGEAAFLLFAARRKLPRFLITAALVAA
                     CLAPWMVACAREAAAGGGLAQNIGWIERPGAKDLAGFFALLHAPFNFQRSSDEPAFST
                     AGALAGLLLVGLPVALLLLRALRRRRARDDDDEGDAVEIFWAGAGGGRRAVAFLAFFA
                     LFPVAAAALASYALPHSVWGARHLIVAAGPYMLLAGLALARLRLAWLKASALVLLGCW
                     LVLAGALSLARRQPAPVWCAWGDLAASAAREETAGAARVFAFEDLVAYHVWFALDGGR
                     GDGRFKVAVVKGVEGVHEDPAFFLPRRFEGVERAGAGALEGPRFWVAFRDRAWDESRP
                     PLGLLRERGYRFERVFEAPARGQRAFFVLASRGGAE"
     gene            7344..7850
                     /locus_tag="VD968_06815"
     CDS             7344..7850
                     /locus_tag="VD968_06815"
                     /inference="COORDINATES: protein motif:HMM:NF016184.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur transferase domain-containing protein"
                     /protein_id="HYE14134.1"
                     /translation="MSNNYNPVPVGAPIVPAGLNCSQVGDFYITAQPTDPQGIETANS
                     LGVVSVVCLRDSAETANPPYPAFDPQEDATATSLGMNFVNVPFPHGMQQSQFDVRAGV
                     VLAALDLLPKPLLMHCSSGDRASALWAVHLMEQCGLPQQEAIGLAQTTGLKAFLSYVQ
                     NYSPAQKS"
BASE COUNT         1102 a         2832 c         2744 g         1322 t
ORIGIN      
        1 gagcttgcgc gcgagcgcga agggctgaag agggagcgcg accttttcac caactccgtc
       61 acggcgcgac tgcgtgagcg cgtgctctcc atccccctcc tcggccccat cgcccgcgcc
      121 gcgtcgaaca ggctcgccca ctgacgcggc ccccgaaggc gccgccgccc atgactaagc
      181 cgtaagagga tgtggcaatg cgggtgctga ttatcaaccg tgtgctcgca aaggcgctgc
      241 ccgtcgtgct gattctgctc ggccccttcg ccgtcggcgc tctgcaactc ctctccctct
      301 ggggggtcgc gctcgccgcc gcggcggccg tcgcgctctt cgccttcgcc tccgggtcgc
      361 tccgcgccaa gaaggcgacg ctggttctcg cgtccgccgc cctcgccgtg accgcatccg
      421 acctgggctt gaggctcctc ccgctcgtgc cgaacgacat gatagagagg tggccgcgcc
      481 tgccgataat cttcaggtac gtccccgacg cgcatttcga gggctaccgc ttcaacgacc
      541 tgagcaggat ggccggcgtc atcgagtgga gggagtacaa gcgcgtccga ctggtcacgg
      601 actccgaagg gttccgtaac gagcgcgccg acgcggcgcg gccgctcgac gtgatagttc
      661 tgggcgactc cttcggcgcg ggcgcggtca gccaggagca cacgtggagc aacatcctcg
      721 cctcgaaata cggcctgagc acttacaacc tttcgacgcc ggcgtccggc ccgtggcagc
      781 agtacgtgaa ccttctggcc gagaaggaca ggctgagtgc gggcgaggga acgttgctcg
      841 tctggcagct cttcacgggt aacgacctcg aagactatta cggcccgctg gagccgggcg
      901 aaatcccctg gtgcggcccc ctcgcggcgt gggtcaaccg cgccaactcc ttcagggggc
      961 gctcgccggt gcgattcctc ctacagaggc gcgagccgag ccgcgacgtg atcccccttg
     1021 acttcataaa cgggcgcaag ctgctcttct accgccccta cgtcgaggcc gccccgcgca
     1081 cggcggagca ggtcgtcggc cacgtcagct acgagcgctt ccgcgcgacg gtgggcgccg
     1141 tcaaggggct ggccgacgcg cagcggctgc ggctggccgt cgtgctcgtc ccttcgaagg
     1201 aggaggtcta cgagtgggca tggaggggcg ctacgccctg gtcaaccagg cccgagcctt
     1261 cgggcttcgc cgtcgcgctg gcgcgcgtct gcgaggagga gggcatcccg ctgctggatt
     1321 tgaagcccca catggttcgc gagtcgcgcc gcgccttcga ggagtcgggg cagctcttct
     1381 actggtacga cgacacacac atgagcacgg cggggaacgt actgagcgcc tccgtcatac
     1441 acgacgcgct catactgggg cgcgtgcggc ccgcggagtg acacggcgtg cgagcgtcct
     1501 taacagacag ggtgcggtcg ggcgtggctc tgagcgcggc gtccgccgtg ctgacgcagg
     1561 ccgtcgggct cgcgcgctcg gtcgtgctgg cgcggctgct cgcgccggac gactacgggc
     1621 tgttcgggat ggcgctgacg gtctcgggcg cgctcacggt gctgacgagc ttcgggctcg
     1681 acttctcgct cgtcgcgcga aagttctcgg gcgaaggcga gcttgaaaaa cacctcgaca
     1741 cggtctggac ggcggaactg ctgcgcaagc tcctgctcgc gctcctcgtg ctcgccgccg
     1801 cctaccctac ggcccgcttc tacggtagcg cggagctttt gcccgtcatg ctcgcgctcg
     1861 ccgccgcgcc gctgattcag gggttccaca acatagggct cgtaatgcag cagaagcggg
     1921 ttgacttccg ccgcgtcgtc tggctcgaac agttgacgaa cctctcctcg acgctggcgg
     1981 cggtggggat tgccctcttc tggtcgcgcg acgtttgggc gctcgtgctc gggcagatag
     2041 cgagcgcggt ggcgggcgtc gcgctctcct acgcgctcga cccgtacagg ccgcgccccc
     2101 ggctcgaccg gcgcgcgctc cgggaggcgc tcgggttcgg caagcacgtc ttcgtcgtgg
     2161 gcgtcgccgc ttacgtgacg acgaccgccg acaacgtcgt cgtcggcaag tcgctgggcg
     2221 cggcggcgct cggcctctac gtcctagcct acaacctcgc gaccatcccc gtcggcgtgg
     2281 ccgcgcgcgt cggcggcacg ctcatccccg cctacgtcga ggcgggtgcg caggagagag
     2341 gcgggcagca agccggcggg caacaggtcg gcgagcgcgt cgagcgggga ttcgcgcgcg
     2401 cgttcgcggc cgccgcggcg ctgctcgccg tcgtctccgc gctgctcctg ctgctggccg
     2461 acgaggtagt cctgctgctc tacggcgcga agtggtcggg cgcggcgccg gcgctgcgcg
     2521 tgctctcggt cgtgtgcttc tgccgcgggc tgatgcaggt cgccgcgccg ctcgtcttaa
     2581 gcgcgcgagg ccccgcgccc gaagcgcgcg ccaaagtctt cgagtcgctc ttcttcctgg
     2641 caatcctcta cccgctcacg cgcgcatacg ggctcgtcgg ggcggcgtcg gcgggcgcgc
     2701 tcgtttacgt gccgacgctg ttcgtgcggc tgcggctcgt ccggttagtc tcgcggcgcg
     2761 cgcacgcgga agccgtggga gcactcgtgc gctcgctcgc ggcgggcgcg gtcgggacgg
     2821 ccctcggcgc gctcgcgctg cgactcttcg acgccccgct tccgcgcgcg gccgccgggg
     2881 cctcgacggc gacggcggcg acactactgc tcctcctcgc cacgcagccc gcgctgcgcg
     2941 ccgaggcggc cgacttcgcg ggctggctgc tgcgcccgcg tgagccgagg cgcgcgcctt
     3001 gaacgcgccg cgcggcggaa gctaaactcg ccccgagcgc gatgaagata ctcgacatag
     3061 gctgcggcaa gcataagacg ccgggcgcca tcggcctcga cagcaacccg cgcacgggcg
     3121 ccgacgtgat acacgacctc gactccgttc cctacccctt ccccgacggc gagttcgatt
     3181 tgataatcgg caaccaggtc atcgagcacg tcggcgacgt gctcgccgtc gtcgccgagc
     3241 tgcaccgcat agcgaagccc ggcgcgctca tacggctcga cacgccgcac tactccgacg
     3301 tcgcgtccta cacagacccg acgcacaagc ggcacctgac gaccgagtcg ttcgcgtact
     3361 tcacgggcca gcgcccagac ttcgacttct acagccacgt gcggctgcgg ccccgcgtga
     3421 tacgagtgac gatgctcaag ctatggcgcc tgatgggctt cgagctgctc gtcaacctgt
     3481 gcaaccgcta cccgtcggcg cgcttcctgc gtaagttctg ggagcagtac ctgtgcttcg
     3541 tcgtgcgcgg gaagacgatc tatttcgagt tcgaggtgat aaagtagccg ccgaacactc
     3601 aaggcaggca cggataaagg aggggagacg aatgagcagc aaggctacga aggccggggg
     3661 cggcgggcag cagcagaagc gctcgtcggg gcggccgtcg aagaaggatc agataatcgc
     3721 gctgttcctt tcggggatgg gcgaggtcga ggacatcgcg gtcataacgg ggtcgcgcgc
     3781 gtcctacgtc gggtcggtgt tgcaggaggc ggggttggtg tcgggctact tcgaccttta
     3841 cacctcgacc tcgcacccgc agaacatcta ctcgaagttc ttcgcgggca agctcggctt
     3901 ccgcgacgag gaggcggcgc gccagagcgt cgagctcata gaccggctct accgccagtt
     3961 cgagttcgcg gccgaccggg cgggccagca ccacgcgctc tcgatggcgc taacgatgtt
     4021 cgaccgcgcg cgctggacgg gcaaggggcg cgaggccgaa gtcttccgcg agtggttgac
     4081 ggcgaggcta caggaggcag tgctctcgcc cgacgacccg tcgcaggtag agggcgactc
     4141 catcgagaac gtccccgacg acctgtcctg aacgaaatta acgcgggcgg ggcgaacagg
     4201 atttgaaatc tcaaattctc tttatcctgt tcgccccgtc cgcccgcgtt aattccttcc
     4261 cccgcatgaa aaatctaaga agagttttcc ccgcgctcct actcctgtgc gcgctgccgg
     4321 cggcggcgag ggccgaccgc gttgacgacc tcgtgcgcga gcagatgcgg ctgcggcacg
     4381 tgccggggct ggcgttggcg gtcattcgcg acggcagggt cgtcaaggag cggggctacg
     4441 ggctggcgag cgtcgagctg aacgcccccg tcacgcccgc cacggtcttc gagattggct
     4501 cggtctccaa gcagattacg gccgcggccg tcatgctctt agtcgaagag gggaaagtcg
     4561 gcctggacga cccggtcggt aagtacctgc cagaggcgcc cgcggagtgg ggcggcgtta
     4621 cagtccgcca cctgctcacc cacacctcgg ggctgaagaa ctacacgggc ctcgccggct
     4681 tcgagctgac cgagcgcctg aagcgcgacg agttcatcag gcgcatcgcc gcgcacccgc
     4741 tcgccttcgc gcccggagag gcgcacagct acggcaacac caactacaac ctgctcggct
     4801 tcgtcgtcga ggccgcgtcg ggtcgcccct actgggagtt cgttcaagag cgcattttcc
     4861 gcccgctcgg catgacctcg accgccgacc gcgacccgcg caacgtcata ccgaaccgcg
     4921 ccgccggcta cgagtgggag ggcgggcgcc tcatcgggcg cgactacgac ctgacggacg
     4981 tgttctcggc cggggcgata gtctcgaccg tgcgcgacct cgtccgttgg gacgcggcgc
     5041 tcgaaggcga gcggctgctg aaacgttcga gcctcgaact ggtctggtcg cccgttcgcc
     5101 tgaacggcgg gaagagctac ccctacggct tcggctggta catagagagc ctgcgcggcc
     5161 acagggtcgt gcgacacaac gggcagacgg ccggcttcgc cgcctcgatt gcgcgctaca
     5221 cggacgaccg cctgaccgtc atagtcctca cgaacctcgg caccatcggc ctggcggggc
     5281 gcatcaacca gcaggtggcg aagctctacg tgccggcgct ctcgctcaga gagttgggcg
     5341 ggcggcccga cccggacgcg cggctgacgg gccgcctgcg cgacgcgctc gccggccttc
     5401 tctccggccg cccttcggcc gaagccttca cgccggagcg cttcaaggcc gtgacgagcg
     5461 agtcggccaa gggcaactgg cagacgctcg cctcatacgg cgcggccagc gcgctcacat
     5521 tcgtcgaggc agacgcttcc gcaccccgcg ccttccgcta caaggccgcg ctcggccgcc
     5581 acctcctgct cttaaggttc gcgcttacgg aggacggcaa aatctccgag ctggccgtcg
     5641 aagaggaaga gtgagcgcgg gcgctcacgt cgggcgcgcg gggcggctgt ggcccgcgct
     5701 cgcggcggcc gcgctcgtcg ggctctacgc cgcgccgcgc ctgcgcgggc tcacggattc
     5761 ctgtctgtgg ttcgacgagc tgttcggcgt gcacgccgcg cgccacgatt ggggcgggct
     5821 ctggcgcttc gtcgcggccg acctgattca cccgccgctc ttctacgcgc tcctgaaaat
     5881 ctgggcggcc gccgggggcg agtcgctcct gtggctgcgg ctcttccccg cgctcacttc
     5941 cgtcgcggcg ctcgtcccct tcctccttct ggcgcgagag ttgcggctcc cgcgcgccgc
     6001 cgcggggctc gcgctcctgc tcgccgccgc gaacggctac ctgatcaagt acgcgcagga
     6061 ggtccgcatg tacggcctcc tgcttctgct ctcactcttt tcgctctggc tcttggcccg
     6121 tctgctcgcg gcgcgcgggg ccgggccggc tcggcgccat gccgcgctct tcgccgccaa
     6181 cctactgctc gcctacacgc actactacgg ctggctcgtc gtcgcgggcg aggcggcgtt
     6241 cctcctcttc gccgcgaggc gcaagctccc gcgctttctg attacggcgg cgctcgtcgc
     6301 cgcgtgctta gcgccgtgga tggtcgcgtg cgcgcgcgag gcggcggcgg gcggcgggct
     6361 cgcgcagaac atcggctgga ttgagaggcc gggcgcgaag gatttggcgg gcttcttcgc
     6421 gctcctgcac gcgcccttca acttccagcg aagctcggac gagccggcct tctcgacggc
     6481 gggcgcgctc gccggcctcc tgctcgtcgg gctccccgtc gcgctcctgc tcctccgagc
     6541 ccttcgccga cgccgtgcgc gcgacgacga cgatgaaggc gacgccgtag aaattttttg
     6601 ggccggggcg ggaggcggga ggagggcggt cgccttcctg gccttcttcg cccttttccc
     6661 cgtcgcggcg gccgcgctgg cgagttacgc gctaccgcac tcggtctggg gcgcgcgcca
     6721 tctcatagtc gcggccgggc cgtacatgct actcgcgggg ctcgcgctcg cgcggcttcg
     6781 gctggcgtgg ctcaaggcgt cggcgctcgt cctcctgggc tgctggctcg tgctcgcggg
     6841 cgcgctctcg ctcgcgcgga ggcagcccgc gcccgtctgg tgcgcgtggg gtgacttggc
     6901 cgcgtcggcg gctagggagg agacggcggg cgccgcacgg gtcttcgcct tcgaagactt
     6961 ggtcgcctac cacgtctggt tcgcgctcga cggcgggagg ggcgacgggc gcttcaaggt
     7021 cgccgtcgtc aaaggcgtgg agggcgtaca tgaagacccc gccttcttcc tgcctcgacg
     7081 cttcgagggc gtcgagaggg cgggcgccgg cgcgctcgaa ggccctcgct tctgggttgc
     7141 gttccgcgac agggcttggg acgagtcgcg cccgccgctc gggctcctca gagagcgcgg
     7201 ctaccgcttc gagcgagtct tcgaggcgcc ggcccgcggg cagcgcgcct tcttcgtgct
     7261 ggcctcgcgc ggcggggccg agtagaatgc cgagccgccc tcgccgcttc gccgcctcgc
     7321 gcttccagcc cccggaggag aaaatgagca acaactacaa ccccgtcccc gtaggcgccc
     7381 ccatcgtgcc cgccggcctc aactgctcgc aggtcggcga cttctacata acggcgcagc
     7441 cgaccgaccc gcaaggcatc gagacggcga actcgcttgg cgtcgtctcc gtcgtctgcc
     7501 tgcgcgactc ggccgagacg gccaacccgc cctacccggc cttcgacccg caggaggacg
     7561 cgaccgccac ctcgctcggc atgaacttcg tcaacgtccc cttcccgcac gggatgcagc
     7621 agtcgcagtt cgacgtgcga gcgggcgtgg tgctcgcggc gctcgacctt ctgccgaagc
     7681 cgctattgat gcactgctcg agcggcgacc gcgcctcggc gctatgggcc gtgcacctca
     7741 tggagcagtg cggcctgccg cagcaggagg ccatcgggct cgcccagacg accggcctga
     7801 aggcgttcct ttcatacgtg cagaactact cgcccgcgca gaaaagttga gggccgggcg
     7861 cgtcggccgc ccggccctcc ggtttttcag aattggcgct cgccgcccgc tcagagcggg
     7921 tcgctgcccg gcgggttctg gtcgcctatg ggctcggtcg gcggcacggg gtcgctgtcc
     7981 ttcgggtacg ggtctccccc
//
LOCUS       DASPKR010000249         7644 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_549143, whole genome shotgun sequence.
ACCESSION   DASPKR010000249 DASPKR010000000
VERSION     DASPKR010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7644)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7644
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549143"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..963
                     /locus_tag="VD968_06820"
     CDS             <1..963
                     /locus_tag="VD968_06820"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF003519.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HYE14135.1"
                     /translation="KLTIEVWTDGSVKPDDAIGLAAKLIKDHMQIFINFEEDTDEFSS
                     IRGVVEDATDVILNLKQIPFKLHGTEPKTLTIRRDGAGEVTSADIEHDADVEVLDNEV
                     YIATVSEGGSLNIEMRLKRGRGYTPAERNFDEDLSLGYIPIDSVHTPVKKVNYTVEAA
                     RLGQNTEFDKLTIEVWTDGSVKPDDAIGLAAKLIKDHMQIFINFEEDTDEFSYQNIER
                     PPLPRNDVLDRSVDELELSVRSYNCLKNANIRSIRDLVQRSEREMLATKNFGKKSLNE
                     IKEILHGMGLDFGMAFDEQGNPIPGSGGSDVDLSEYADDDEDEE"
     gene            1048..1782
                     /gene="rplQ"
                     /locus_tag="VD968_06825"
     CDS             1048..1782
                     /gene="rplQ"
                     /locus_tag="VD968_06825"
                     /inference="COORDINATES: protein motif:HMM:TIGR00059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HYE14136.1"
                     /translation="MRHLRAHRKLGRTTEHRISMLRNLATSLINARNERIVTTVPKAK
                     ELRPFVERVITLAKRAGALTGDDAGAQALHLRRQAAGFFHSGNQGAAQRTGRRGQARP
                     PRTAGVAALKRLFDELGERYKDRPGGYTRIIRLGRRDGDNAELAIIELVDNPRDREAA
                     ADSKKAKTAASGKKKTTKAGDSKEAAGGRKGGRKADSTFEKEETTKARGTARASEKTK
                     KDADKAGSGGTRSKKTESTAAEQDTE"
     gene            1968..2684
                     /gene="accB"
                     /locus_tag="VD968_06830"
     CDS             1968..2684
                     /gene="accB"
                     /locus_tag="VD968_06830"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HYE14137.1"
                     /translation="MSSTSDQNQPHAQGGGGAEQGRGGAGTAAAPQAETGGGQASERQ
                     GRHGGGANRRRRGREGGGGRPGEQQQRQPQARRSEGSLNMDELRELTELFSSHGLTDF
                     EFENADIRIRLSRSPAPSAAPVALPPPAVAPTPPPAPAPAPAPEAAPAAAASAAAEEE
                     LHIITSPIVGTFYRSPAPDADPFVKAGSRVEPDTVVCIIEAMKLMNEIQAEATGTIEK
                     IYVENGQPVEYGQPLFGLKK"
     gene            2764..4146
                     /gene="accC"
                     /locus_tag="VD968_06835"
     CDS             2764..4146
                     /gene="accC"
                     /locus_tag="VD968_06835"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: protein motif:HMM:NF006367.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HYE14138.1"
                     /translation="MRKFRKILIANRGEIACRIIWTCKEMGIQTVAVHSTADRDSLHV
                     RFADEAVCIGAPTSAQSYLNIPSVIAAAEITDVDAIHPGYGFLAESAYFAEICEACNI
                     KFIGPRPDVIRMMGDKVEARRAMKEAGLPILPGSEEPLKSEEEARAIVQEIGYPVIIK
                     ASAGGGGRGMRIVRTPEELGPAMQTASTEAAAAFKNGDIYVERYVESPRHIEIQVLAD
                     EHGHCIHLGERDCSIQRRHQKLIEEAPSPVLTPELRERMGTAAVEACKRVGYSSAGTI
                     EFLLDEHGNFYFMEMNTRIQVEHPVTEMVTLTDIVRNQILVAEGQPLWYKQSDVLFVG
                     HSIECRINAEDPQTFAPSPGRITAYNAPGGPGVRLDTAAYPGYFVPPYYDSLIAKLIV
                     HARTRDVAIARMRRALEVMVVEGVKTTIPLHRAIMEDSYFRAGEYSTKFMEQFFERRS
                     RGGAAASTAG"
     gene            4249..4557
                     /gene="rplU"
                     /locus_tag="VD968_06840"
     CDS             4249..4557
                     /gene="rplU"
                     /locus_tag="VD968_06840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HYE14139.1"
                     /translation="MAYAIIRSGGKQFRVEEGGTVRVPSLGAQAGDRVELEALVVAGD
                     EGVRVGNPVVDGATVSGTVVDHGRADKVIVFKKKRRKQYKRTQGHRQNYTTVKIDSIG
                     "
     gene            4633..4929
                     /gene="rpmA"
                     /locus_tag="VD968_06845"
     CDS             4633..4929
                     /gene="rpmA"
                     /locus_tag="VD968_06845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001816392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HYE14140.1"
                     /translation="MAHKKGVGSSRNGRDSHSQRLGLKKFGGESVLGGNILARQRGTK
                     WKPGKNVGRGKDDTLFALIDGVVKFEDKGRRGKFISVYPAAAQQAAGGEAPPAA"
     gene            5015..6064
                     /gene="obgE"
                     /locus_tag="VD968_06850"
     CDS             5015..6064
                     /gene="obgE"
                     /locus_tag="VD968_06850"
                     /inference="COORDINATES: protein motif:HMM:NF008954.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HYE14141.1"
                     /translation="MFIDRTRIRVRAGAGGNGVTAFRREKFVPRGGPSGGDGGRGGDV
                     WLVADSSLNTLLHLRYNPEHAAGRGGHGEGSNRSGRDGEDVVVRVPPGTQVVDVETGD
                     LLVDLSEDGQRWLAAKGGRGGFGNAHFASSTNRAPRYHQEGSPGEERELQLELKLLAD
                     VALVGFPNAGKSTLISTVSAAKPKVADYPFTTLEPHLGVVDLGDYRTFVVADIPGLIE
                     GAHEGAGLGDRFLRHVERTRLLLHLVDVSSASGRDPVSDYEVINRELAAYDRRLAERP
                     QFVVATKLDALDEPERLERLRGRARQDGREFFEISSATNRGVRELVSAVARALEGLGG
                     AGGGSRDDAGLVRTS"
     gene            6061..6792
                     /gene="nadD"
                     /locus_tag="VD968_06855"
     CDS             6061..6792
                     /gene="nadD"
                     /locus_tag="VD968_06855"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: protein motif:HMM:NF000840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HYE14142.1"
                     /translation="MKSRRRVALYGGTFDPVHVGHAAVARNLVALFGLDEIIFVPAYV
                     APHKRDRKVSPALHRYAMLALATQDDERLRVSTVELEAPGRPYTIDTLGRFAALAGEG
                     VRLFFVMGADSWEEITTWREWERVLSLTDHLVVTRPGYELDDSHVTADVRARIADVRG
                     ASRERVEAELQAARGRKRIYLTDAASVSLSATDVREAVRSGGADAARLGELVASPVAE
                     YIRKYGLYMEADGTKFSDAGIKQEH"
     gene            6767..7255
                     /gene="rsfS"
                     /locus_tag="VD968_06860"
     CDS             6767..7255
                     /gene="rsfS"
                     /locus_tag="VD968_06860"
                     /inference="COORDINATES: protein motif:HMM:TIGR00090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HYE14143.1"
                     /translation="MPESSKNIEKDEPKRAAEGAAGAEAAAEPLDERLAVALHAAADK
                     KALGAVVLDLREVASFTDYFAIVSGTNVRQVQAIADEVVEQVRKRHGSKPARIEGYNS
                     AEWVLLDYGDFIFHVFEEKSRRFYDLERLWRDAMRVPLPPELSGGDAGGASGGGSLRN
                     SQ"
     gene            7252..>7644
                     /locus_tag="VD968_06865"
     CDS             7252..>7644
                     /locus_tag="VD968_06865"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 factor interaction domain-containing
                     protein"
                     /protein_id="HYE14144.1"
                     /translation="MIELVARSEAMGEALRLAGRVAATDANLLVTGESGAGKDALALF
                     VHAMSRRALGPFVKIDCAALPGELLEAELFGYERGAFTGATQAKPGRLEAAHKGTLVL
                     DEVAHLSVDAQAKLLRVIERREFERLGGR"
BASE COUNT         1416 a         2539 c         2620 g         1069 t
ORIGIN      
        1 aagttgacca tcgaggtctg gacggacggg agcgttaagc cggacgacgc catcggcctc
       61 gccgcgaagt tgataaagga tcacatgcag atcttcatca acttcgagga ggacaccgac
      121 gagttctcct cgatacgcgg cgtcgtcgag gacgcgaccg acgtaattct taacctcaag
      181 cagataccct tcaagctcca cggcaccgag cccaagaccc tgaccatccg acgcgacggc
      241 gccggcgagg tcacctccgc cgacatcgag cacgacgccg acgtggaggt gctcgacaac
      301 gaggtctata tcgcgacggt cagcgagggc ggctcgctca acatcgagat gcgcctcaag
      361 cgcggccgcg gctacacgcc cgccgagcgc aacttcgacg aggacttgtc gctcggctac
      421 atcccgattg actccgtcca cacgcccgtc aagaaggtca actacacggt cgaggccgct
      481 cgcctgggcc agaacaccga gttcgacaag ctgaccatcg aggtctggac ggacgggagc
      541 gttaagccgg acgacgccat cggcctcgcc gcgaagttga taaaggatca catgcagatc
      601 ttcatcaact tcgaggagga caccgacgag ttctcctacc agaacatcga gcgcccgccg
      661 ctgcccagga acgacgtgct cgaccgctcc gtggacgagc tggagctctc cgtccgttct
      721 tacaactgcc tgaagaacgc gaacatccgc tccatccgcg acctcgtgca gcggagcgag
      781 cgagagatgc tggcgacgaa gaacttcggc aagaagtcgc tgaacgagat aaaggaaatc
      841 ctccacggca tggggctcga cttcggcatg gccttcgacg agcagggcaa ccccatcccc
      901 ggctccggcg gctcggacgt tgacctcagc gagtacgccg acgacgacga ggacgaagaa
      961 taaatagccg tcagcaatcg gcggtcagct ttcctgtctt aaagctgacc gccgattgct
     1021 gaccgcttac agctttaagg aattgtcatg cgacacttga gagcacaccg caaactcggg
     1081 cggacgaccg agcacagaat ctcgatgctc cgcaacctcg cgacctcgct gattaacgcg
     1141 aggaacgagc gcatcgtgac gacggtgccg aaggcgaaag agctccggcc cttcgtcgag
     1201 cgcgtcatca ctctggcgaa gcgcgcgggc gcgctcacgg gcgacgacgc gggcgcgcag
     1261 gctctgcacc tgcgccgcca ggccgcgggc ttcttccact ccggcaacca gggcgcggca
     1321 cagcgcacgg gaaggcgcgg gcaggcccgc ccgccccgca cggccggcgt cgccgccctc
     1381 aaacgcctct tcgacgaact gggcgagcgc tacaaagacc gccccggcgg ctacacacgc
     1441 ataattcggc ttggccgccg cgacggcgac aacgccgagc tcgcaatcat cgagctcgtt
     1501 gacaacccgc gcgaccgcga ggccgcggca gactcgaaga aggctaagac cgccgcctcc
     1561 ggcaagaaga agaccacgaa ggccggcgac tcgaaggagg ccgcgggcgg ccgcaagggc
     1621 ggtcgcaagg ccgacagcac cttcgagaag gaagagacca cgaaggcgcg cggcacggcc
     1681 cgcgcgtcgg agaagacgaa gaaggacgcc gacaaggccg gcagcggcgg cacgcgctcg
     1741 aagaaaaccg agtcaactgc cgccgagcag gataccgagt aggtcgccgg cagggtgaga
     1801 acggccgcgg cgcttccccc cgcccgagct tcggccggag cgcgcggccc ctttagaaag
     1861 caagcagaga gccccggcgc ccgcctcgct cggcaagcgg caaggggctc ttatctttaa
     1921 cgcgggttcg ggcgcacgtc tttcgcacgc acgttcggag gcaaacgatg agcagcacga
     1981 gcgatcagaa ccaaccgcac gcgcagggcg gcggcggcgc agagcagggg cgcggcggcg
     2041 cgggaacggc cgccgcgccg caggccgaga ccggcggcgg ccaggcttcg gagcgtcagg
     2101 gccgccacgg cggcggcgcg aaccgcaggc gccgcggccg cgaaggcggg ggcggccgcc
     2161 ccggcgagca gcagcagagg cagccgcaag cgcgccgttc cgaagggtcg ctcaacatgg
     2221 acgagctgcg cgagctgacc gagctatttt cgtcgcacgg gctgaccgac ttcgagtttg
     2281 agaatgccga catacgcata cgtctaagcc gctcgcccgc gccgtcggcg gcgcccgtgg
     2341 ccctcccgcc gcccgcggtc gcgcccacgc cgccccccgc gcccgccccg gcgccagcgc
     2401 ccgaagccgc gcccgccgcg gcagcgtcgg cagccgccga ggaggagctg cacatcatca
     2461 cttcgcccat cgtcggtacc ttctaccgct cgcccgcgcc cgacgctgac ccgttcgtca
     2521 aggccggcag ccgcgtcgag cccgacacgg tcgtctgcat catcgaggcc atgaagctca
     2581 tgaacgagat tcaggccgag gccaccggca ccatagagaa aatctacgtg gagaacggcc
     2641 agccggtcga gtacgggcag ccgctcttcg ggctaaagaa atgaagaggc cggaggccgg
     2701 agggcggagg tcagtttaaa gcaatcgtct tttactgact tccgccctcc ggcctctgac
     2761 gctatgcgaa aattccgcaa aattctaatc gcgaaccgcg gcgagatcgc gtgccggatt
     2821 atctggacgt gcaaggagat gggcatccag acggtcgccg tccactccac ggccgaccgc
     2881 gactcgctac acgtccgctt cgccgacgag gccgtctgca tcggcgcgcc cacctccgcg
     2941 cagagctacc tgaacatccc ctcggtcatc gccgccgccg agattacgga cgttgacgcc
     3001 atacaccccg gctacggctt cctcgccgag tcggcctact tcgccgaaat ctgcgaggcc
     3061 tgcaacatca agttcatagg cccgcgcccc gacgtgatac gcatgatggg cgacaaggtc
     3121 gaggcgcgac gcgcgatgaa ggaggcgggc ctccccatcc tgccgggcag cgaggagccg
     3181 cttaagtcag aggaggaggc gcgcgccata gtccaggaga taggctaccc cgtcatcatc
     3241 aaggcctcgg ccggcggcgg aggccggggc atgcgcatcg tgcgcacgcc cgaagagctg
     3301 gggcctgcga tgcagacggc ctcgaccgag gccgcggccg ccttcaagaa cggcgacatc
     3361 tacgtcgagc gctacgtaga gagcccgcgc cacatagaga ttcaggtgct cgcggacgag
     3421 cacggccact gcatacacct cggcgagcgc gactgctcga tacagcgccg ccaccagaag
     3481 ctcatagagg aggcgccgag ccctgtgctc acgcccgagc ttcgcgagcg catgggcacg
     3541 gcggcggtcg aggcctgcaa gcgcgtcggc tattcgagcg ccgggactat cgagttcctc
     3601 ctggacgagc acggcaactt ctacttcatg gagatgaaca cgcgcataca ggtcgagcac
     3661 cccgtgaccg agatggtcac gctcaccgac atcgtgcgca accagattct cgtcgccgag
     3721 gggcagccgc tctggtacaa gcagtcggac gtgctcttcg tcggccactc catcgagtgc
     3781 cgcatcaacg ccgaagaccc gcagacgttc gcgccctcgc cgggaaggat aacggcctac
     3841 aacgcgccgg gcggccccgg cgtccggctc gacacggcgg cctaccccgg ctacttcgtg
     3901 ccgccctact acgactcgct catcgccaag ctcatcgtcc acgcgcgcac gcgcgacgtg
     3961 gcgatagcgc gcatgcgccg cgcgctcgaa gtgatggtcg tcgagggcgt gaagacgacg
     4021 ataccgctgc accgcgccat catggaggac tcgtatttcc gagccggcga atactcgacg
     4081 aagttcatgg agcagttctt cgagcggcgc agccggggcg gggccgcggc ctcgacggcg
     4141 ggctaatcgg gggcggccgc gggcgtttga ctgaccgccg tatcgtcttt ataatgagtg
     4201 acttttctga ggcaagctgg ccttgcctgt gtgggaggag caagagaaat ggcatacgca
     4261 atcatcaggt cgggcggtaa gcagttccgc gtcgaagagg gcgggactgt ccgcgtgcct
     4321 tcgctcggcg ctcaggccgg cgaccgtgta gagctcgagg cgctggtcgt cgcgggcgac
     4381 gagggcgtgc gcgtcggcaa ccccgttgtt gacggcgcga ccgtcagcgg cacggtcgtt
     4441 gaccacggcc gcgccgacaa ggtcatcgtc ttcaagaaga agcgccgcaa gcagtacaag
     4501 cgcacgcagg gccaccggca gaactatacg accgtcaaga ttgattcaat cggatagagg
     4561 ttggagacta gggcctagag gctagttaaa atttcttcga ctagcccccc tagtctctcg
     4621 ggagttaaga caatggcaca taaaaaaggc gtaggctcat cgcgcaacgg ccgcgactcg
     4681 cactcgcagc ggctcggcct gaagaagttc ggcggcgagt ccgtgctggg cggcaacatc
     4741 ctcgcgcgcc agcgcgggac gaagtggaag ccgggcaaga acgtcggccg cggcaaggac
     4801 gacacgttgt tcgctttgat tgacggcgtc gtcaagttcg aggacaaggg gcggcgcggc
     4861 aagttcataa gcgtctatcc ggccgcggcg cagcaggcgg ccggcggcga ggccccaccg
     4921 gccgcctgag ccggaggctc gctatcaccg tgagcgacgc ccgcgcagag tgccagcact
     4981 caagcgtcgg gcgtcgttcg atttttaagt atcgatgttc atagaccgca cgaggattcg
     5041 ggtgcgcgcg ggcgcgggcg gtaacggcgt gacggcgttc cgccgcgaga agttcgtgcc
     5101 gcgcggcggg ccgtccgggg gagacggcgg gcgcggcggc gacgtctggc tcgtcgcgga
     5161 ctcttctctc aacacgctgc tgcacctgcg ctacaacccc gagcacgcgg cgggccgcgg
     5221 cggccacggc gagggctcga accgctcggg ccgagacggc gaggacgttg tggtgcgcgt
     5281 acccccgggc acgcaggtcg tggacgttga gacgggcgac ctgctggttg acctctccga
     5341 ggacggacag cgctggctcg cggcgaaggg cgggcgcggc ggcttcggca acgcgcactt
     5401 cgcaagctcc acgaatcgcg cgccgcgcta ccaccaggag ggcagccccg gcgaggagcg
     5461 cgagctgcaa ctcgaactca aactcctggc ggacgtggcg ctcgtcggct tcccgaacgc
     5521 gggcaagtca acgctcatct cgaccgtctc ggccgcgaag ccgaaggtgg cggactatcc
     5581 tttcacgacg ctggagccgc acctcggcgt cgttgatctc ggcgactacc gcaccttcgt
     5641 cgtcgccgac atacccggcc tcatcgaagg cgcgcacgag ggcgcggggc taggcgaccg
     5701 cttcctgcgc cacgtcgagc ggacgcggct gctgctgcac ttagttgacg tgtcatccgc
     5761 gtcgggccgc gaccccgtct cggactatga ggtcataaac cgcgagcttg ccgcctacga
     5821 caggcggctc gccgagcggc ctcagttcgt agtggctacg aagctcgacg cgctcgacga
     5881 gccggagagg ctcgaacggt tgcgcgggcg cgctcgacag gacgggcgcg agttctttga
     5941 aatctcttcg gcgacgaacc gcggcgtgcg cgagcttgtg agcgcagtgg cgcgtgcgct
     6001 cgaagggctg ggcggggcgg gcggcggctc gcgcgacgac gccgggctgg tgcggacgtc
     6061 gtgaagtcgc ggcggcgggt ggcgctctac ggcgggacgt ttgaccccgt ccacgtcggc
     6121 cacgcggccg tggcgcgcaa cctcgtcgcg ctcttcggcc tcgacgagat aatcttcgtg
     6181 ccggcctacg tcgcgccgca caagcgggac aggaaggtga gcccggcgct ccaccgctac
     6241 gcgatgctcg cgctcgcgac gcaggacgat gagcgcctgc gcgtctcgac cgtcgagctg
     6301 gaagcgcccg ggcggccgta cacgatagac acgctgggcc gcttcgccgc gctcgcaggc
     6361 gagggcgtaa ggctcttctt cgtgatgggc gcagactcct gggaggagat aacgacttgg
     6421 cgcgagtggg agcgcgtgct tagcctgaca gaccacctgg tggtcacgcg ccccggctac
     6481 gagcttgacg actcgcacgt gaccgcggac gtgcgcgccc gcatcgcgga cgtgcgcggc
     6541 gcttcgcgcg agcgcgtcga ggcggagttg caagccgctc gcggccggaa gcgcatatac
     6601 ctgaccgacg cggcgagcgt ctcgctctcc gcgactgacg tacgcgaggc ggtgcgctcg
     6661 ggcggggccg acgccgcacg gttgggcgag ctagtggcgt cgccggtggc cgagtacata
     6721 aggaaatacg gactctacat ggaggctgat gggacaaaat tctccgatgc cggaatcaag
     6781 caagaacatt gagaaggacg agccgaagcg cgcggccgaa ggcgcggcgg gcgccgaggc
     6841 ggccgcggag cctctcgacg agaggctcgc tgtcgcgctc cacgcggccg cagacaagaa
     6901 ggcgctcggg gcagtcgtgc tcgacctgcg agaggtggcg agcttcacgg actacttcgc
     6961 aatcgtgagc ggcacgaacg tgaggcaggt gcaggccatc gccgacgagg tcgtagagca
     7021 ggtgaggaag cggcacggct cgaagcccgc gcgcatcgag ggctacaact cggccgagtg
     7081 ggtgctgctc gactacggcg acttcatctt ccacgtcttc gaggagaagt cgcgccgctt
     7141 ctacgacctc gaaaggctct ggcgcgacgc catgcgggtg ccgctcccgc cggaactctc
     7201 cggcggcgac gccggcggcg cgtcgggcgg cggctctttg agaaatagtc aatgatcgag
     7261 ctggtcgcgc gctccgaggc gatgggcgag gccctgcggc tcgcgggccg cgtcgccgcg
     7321 acggacgcga acctgctcgt cacgggcgag tcgggcgccg gcaaggacgc gctcgccctc
     7381 ttcgtccacg cgatgagccg gcgcgccctc ggccccttcg tcaagataga ctgcgcggcg
     7441 ctgccgggcg agcttcttga ggctgagctg ttcggctacg agcgcggagc cttcacgggg
     7501 gcgacgcagg caaagccggg ccggttggag gcggcgcaca aggggacgct cgttttagac
     7561 gaggtggcgc acctgtcggt ggacgcgcag gcgaagctgc tgcgcgtgat agagcggcgc
     7621 gagttcgagc gcctgggcgg gcgc
//
LOCUS       DASPKR010000250         4435 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_289207, whole genome shotgun sequence.
ACCESSION   DASPKR010000250 DASPKR010000000
VERSION     DASPKR010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4435)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4435
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289207"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>4435
                     /locus_tag="VD968_06870"
     CDS             <1..>4435
                     /locus_tag="VD968_06870"
                     /inference="COORDINATES: protein motif:HMM:NF015497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HYE14145.1"
                     /translation="TAGMTPQLALAYNSGAGNDLLGVGWSLHGLSAITRCAATEAQDG
                     FRGTVAYDEGDRFALDGQRLMAVSGSGYGAEDAVYHTEVESWHRVAPVYGGSAAPASG
                     PVSFVVQDKDGRTYEYGATPDSRVAASADNPSVRVWALNKITDSNGNYLTVTYQPDPS
                     NNTNCPLSIDYTFNEGLTQFRSVKFIYEPRPDPYTRYAGGYPVTTTQLLKQVQTLLDG
                     ELVRTYTLEYQQGQATGRSRLCSVTESDAAGAALPPTTFEWQDGDAGLFAACAQLPAT
                     GQPWQGTLLSLDANGDGLCDIVNAYQSDEGNLQLTLFLADEEGFSSGIVIETTIPYAE
                     GMQILPMDVDGDGCVDLVCAQSSGDWDLGLTVLLSRPGGEGGWQFVQGALNGGGPPDL
                     PWGGQLLSMDVDGDGMADLVYSYQNGMTLALAFLFSDGSAFAPSPDDKTSPTVDFFGG
                     AQYLGGDFNGDGMCDLVYAYQSGDYMAMTLFLSAGRGGLIQQAGSPLPSATSVPACGA
                     LTTLDVNSDGLADLVQAYLDGDSLVVNTLLSNGASFEPAVTQNFQIPNLGTATPTLLP
                     MDVNGDGLPDLVISAQNGDDLQLSALLSNGGGFTLQEGVAQPPASIQPGGVILPFDAN
                     GDGKTDLVFAYNAGDAEQSLGLSKMLAAGPFPDLLTGVTNGLGGKFGITYAPLTDASV
                     YSRNAPAGGSQVSVQNLLNNSVSGASYPITYSPTSTPSTPGSTLTTRLVDFPKYVVAS
                     HTKDDAVGQSYSYDYYYAAALLDLTGRGWLGFNTMRMTDNDFQTTTVTHYNQQFPLTH
                     SVESSTIGRSADGALMHRVTYEYQQAVNAPNTGPGVALVLTQSVRTDCYNFAPPGDDP
                     APDTTDLTTYAYDDGFGNATQTSHTGTGWGAPLYVFETYLNDPSKWALGFKTGRALAS
                     DAAGEQVLSRQAMAYDPGTLKLTRTELWNDQAQSMEATGYGYDAYGNQTSVTDPSGAV
                     SRIAYDAAYQTFMASKTSPPNQSGRSLTWQYAYYPQFGVRQSETDANGVVRGQNVDGL
                     GRVVETYGPDPSGATVTLSRVTWASDQSGTYRQTDDITDWAGTADWARQYLDGFSRVW
                     RVASLGPDGESTVLVDKTLNSRGLTLRQSLPYYETGAPLFIENTYDNFGRQTQIDHPL
                     GGGDYVTTRIDYETATRVVQTEAFGRPYARATTSEYSTFNSKRVLVNQTDAAGATTAY
                     GYDPLGRLVSVKDGAGVVTSAAYDSLNRKISLKAESPSGTVLSEETFTFDDLNRTTTH
                     VDARQTRIVQTYDALRRLVGRTVQLQGGEPVSTAYTLDDPSSAYGQDRVSGARVQDGV
                     SYAYGYDPDGNQTEITIALDGESYAFKKSYLPGGRLGRLTFPDLSVQTNNYNAARQLT
                     SVAVAAEGGPAPQTLATYSEFYPFGAAGHVAYGNSTSAGYTYDGGARLTAKSLAGPSG
                     PLAELGYGWNDLFELTEVRDELTPANTQTFGYDPVGRLAQA"
BASE COUNT          778 a         1651 c         1374 g          632 t
ORIGIN      
        1 gcacggcggg catgacgccg cagctcgcgc tcgcctacaa cagcggcgcg ggcaacgacc
       61 tgctcggcgt cggctggagc ctccacggcc tctccgccat cactcgctgc gcggccaccg
      121 aggcgcagga cggcttccgc ggcaccgtcg cctacgacga gggtgaccgc ttcgccctcg
      181 acggccagcg gctcatggcc gtcagcggca gcggctacgg cgccgaggac gccgtctatc
      241 acacggaggt cgagagctgg cacagggtcg ccccggttta cggcggctcg gccgccccgg
      301 cgagcggccc cgtctccttc gtcgtccagg acaaggacgg ccggacttac gagtacgggg
      361 ccacgcccga ctctcgcgtc gccgcttcgg ccgacaaccc gagcgtgcgc gtctgggcgc
      421 tcaacaagat tacggactcg aacggcaact acctgaccgt cacttaccag cccgacccgt
      481 cgaacaacac gaactgcccg ttgagcattg actacacgtt caacgaaggg ctgacgcagt
      541 tccgctccgt caagttcatc tacgagccgc ggcccgaccc ctacacgcgc tacgcgggcg
      601 gctaccccgt cacgaccaca caactgctta agcaggttca gaccctcctc gacggcgagc
      661 tggttcgcac ctacacgctt gagtatcaac agggtcaggc gacggggcgc agccgcctct
      721 gctcagtgac ggaatcggac gccgcggggg cggccctgcc gccgaccacc ttcgagtggc
      781 aagacggcga cgcgggcctc ttcgcggcgt gcgcgcagct ccccgcgacc ggccagccgt
      841 ggcaggggac gctcctgtcc ctggacgcga acggcgacgg gctttgcgac atcgtcaacg
      901 cctaccagtc tgacgaaggc aaccttcagc tcacgctctt cctcgccgac gaggagggct
      961 tctcaagcgg catcgtcatc gagacgacca tcccctacgc cgaggggatg caaatcctcc
     1021 cgatggacgt ggacggagac ggctgcgttg acctcgtctg cgcccagtcg tcaggggact
     1081 gggacctggg cctgacggtg cttctgtcgc ggcccggcgg cgaggggggc tggcagttcg
     1141 tccagggggc gctcaacggc ggcgggccgc ccgacctgcc atggggcggg cagctcctct
     1201 cgatggacgt ggacggcgac gggatggccg acctggttta ctcataccag aacggtatga
     1261 ctctggcgct cgcgttcctg ttctccgacg ggagcgcctt cgcgccttcg cccgacgaca
     1321 agacgagccc gaccgttgac ttcttcggcg gcgcgcagta cctcggcggc gacttcaacg
     1381 gcgacggcat gtgcgacctc gtttacgcct accagtcggg cgactacatg gcgatgacgc
     1441 tcttcctctc ggcggggcgc ggcggcctga ttcagcaggc cggcagccct ctcccgtccg
     1501 cgacttcggt gccggcctgc ggggctctga ccacgctcga cgtgaactcg gacgggctgg
     1561 ccgacctcgt gcaggcgtac ctcgacggcg actcgctcgt cgtcaacacg ctcctctcca
     1621 acggcgcgtc cttcgagccg gccgtcacgc agaacttcca gataccgaac ctcggcacgg
     1681 cgacgcccac gctgctgccg atggacgtga acggcgacgg gctgcccgac ctcgtcatct
     1741 ccgcccagaa cggcgacgac ctacagttga gcgccctgct ctcgaacggc ggcggcttca
     1801 cgctccagga gggggtcgcg cagccgcccg cctcgataca gcccggcggc gtcatcctgc
     1861 ccttcgacgc caacggcgac ggcaagaccg acctcgtctt cgcctacaac gcgggcgacg
     1921 ccgaacagag cctcggcctc tcgaagatgc tggccgccgg acccttccca gaccttctca
     1981 ccggcgtcac caacggcctc ggcggcaagt tcggcatcac ctacgcgcct ttgaccgacg
     2041 cgagcgttta cagcaggaac gccccggcgg gcggctcgca ggtcagcgtg cagaacctcc
     2101 tcaacaactc ggtctcgggg gcgagctacc cgatcactta ctcgcccacc tccacgccct
     2161 cgacgccggg cagcaccctc acgacgcgcc tcgtggactt ccccaagtac gtggtcgcct
     2221 cccacactaa ggacgacgcg gtcggccagt cgtactctta cgactactac tacgccgccg
     2281 cgctgctcga cctcaccggg cgcggctggc tcggcttcaa cacgatgcgg atgacggaca
     2341 acgacttcca gaccacgacc gtgacgcact acaaccagca gttccccctc acgcactcgg
     2401 tcgagtcgag cactatcggc cgctcggccg acggcgcgct gatgcaccgc gtcacttacg
     2461 aataccagca ggccgtgaac gccccgaaca cggggccggg ggtcgcgctc gtcctcactc
     2521 agtccgtccg cacggactgc tacaacttcg caccgcccgg cgacgacccc gcgccggata
     2581 cgaccgacct gacgacctac gcatacgacg acgggttcgg caacgccacg cagacctccc
     2641 acacgggcac gggctggggc gcgccgctct acgtcttcga gacgtacctg aacgacccct
     2701 cgaagtgggc gctcggcttc aagaccgggc gggcgctcgc ctccgacgcg gcgggcgagc
     2761 aggtgctctc gcgtcaggcg atggcctacg accccggcac gctcaaactc acgcgcacgg
     2821 agttgtggaa cgaccaggcg cagagcatgg aggcgaccgg ctacggctac gacgcctacg
     2881 gcaaccagac ctccgtcaca gacccttcgg gcgcggtcag ccgcatcgcc tacgacgcgg
     2941 cctaccagac cttcatggcg agcaagacct ctccgcccaa ccagtccggg cgcagcctga
     3001 cttggcagta cgcttactac ccgcagttcg gcgtgcggca gagcgagacg gacgcaaacg
     3061 gcgtcgtgcg cgggcagaac gttgacgggc tcgggcgcgt cgtagagact tacggccccg
     3121 acccttcggg cgcgaccgtc acgctctcgc gcgtcacatg ggcgtccgac cagtcgggaa
     3181 cctacaggca gacggacgac atcacggatt gggcggggac ggccgactgg gccagacagt
     3241 acctcgacgg gttctcaaga gtgtggcgcg tcgcctcgct cggccccgac ggcgagagca
     3301 ccgtgctggt ggacaagacg ctcaacagcc gcgggcttac cctgcggcag tcgctcccct
     3361 actacgagac aggcgcgccg ctcttcatcg agaacaccta cgacaacttc ggcaggcaga
     3421 ctcagataga ccacccgctc ggcggcggcg actacgtcac cacgaggatt gactacgaga
     3481 cggccacccg cgtcgtgcag accgaagcct tcggccggcc ctacgccaga gccactacga
     3541 gcgagtacag caccttcaac tcgaagaggg tgctggtgaa ccagaccgac gccgccggcg
     3601 cgacgaccgc ctacggctac gaccctctgg gcaggctcgt ctccgtcaaa gacggcgcgg
     3661 gcgtcgtcac ctcggcagcc tacgacagcc tcaaccgcaa aatctccctc aaggccgaga
     3721 gcccgtccgg cacagtcctc tccgaggaaa ctttcacctt cgacgacctg aaccgcacga
     3781 cgacgcacgt tgacgcgcgg cagaccagga tagtgcagac ctacgacgcg ctgcgccggc
     3841 tcgtcggcag gacggttcag cttcagggcg gcgagcccgt ctcgacggcc tacacgctcg
     3901 acgacccttc gagcgcctac gggcaggaca gggtttcggg cgcccgggtg caggacggcg
     3961 tctcctacgc ttacggctac gacccggacg gcaaccagac cgagatcaca atcgccctcg
     4021 acggcgagag ctacgccttc aaaaaatcct acctccccgg cgggcggctc ggccgactca
     4081 ccttcccgga cctctccgtg cagacgaaca actacaacgc cgcccggcag ctaacctccg
     4141 tggcggtcgc ggccgagggc ggccccgcac cgcagacgct cgccacgtac tcggagttct
     4201 acccgttcgg cgcggcaggg catgtggctt acggcaactc gacctccgcc ggctacacgt
     4261 acgacggcgg cgcccggctc acggcgaagt cgctcgccgg gccttccggc ccgctcgccg
     4321 agctcggcta cggctggaac gacctcttcg agctcaccga agttcgggac gaactgacgc
     4381 cggcaaatac gcagaccttc ggctacgacc ccgtcgggcg cctcgcgcag gccag
//
LOCUS       DASPKR010000251         2002 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_549454, whole genome shotgun sequence.
ACCESSION   DASPKR010000251 DASPKR010000000
VERSION     DASPKR010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549454"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..>2002
                     /locus_tag="VD968_06875"
     CDS             120..>2002
                     /locus_tag="VD968_06875"
                     /inference="COORDINATES: protein motif:HMM:TIGR02388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14146.1"
                     /translation="MPSQDIVLGCYYLTRDRAGLKGEGRVFSSTEEVLLALDAKEVET
                     QTPIKLRLSGDLIDLTQEHDTQDVLRAALQENVRRVINTTVGRVIFNDQVAEGLPYVN
                     GTLKKKGLQSLVNYCHLRLGHEMTVKMLDDLKNLGFLYATKAGISIGIDDLVTPESKK
                     TLVGQADRDVIEVEKQYRDGVITNGERYNKVIAIWSEVTDRVAKEMFMAMDQREKANN
                     ELNPILIMSDSGARGTAQQIRQLAGMRGLMAKPSGEIIETPIRSNFREGLNVLQYFIS
                     THGARKGLADTALKTADSGYLTRRLVDVAQDVIISEPDCGTLKGISSTAIVEGGEEIE
                     SLRDRIVGRTALEDVIDPVEGRVIVASNEEINEDLAQEIQRSGVQRVRIRSVLTCESR
                     RGVCIKCYGRNLATGRPVDIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTARLEEQSKH
                     EARMDGTIKYVDLQTVKNRRGEIIAMNRNGALTIIDERGREVARYQIVYGAHIHVENG
                     ARVKEDQQLATWDPFTFAILTEVAGAVKFQDLKEGVTVDEEVDEVTGQSRLVVKDSPD
                     EKRQPRLEIRSGNKVLKTYQMPVCANLMVHDGDEVAPGDVIAKIPRETTKTKDITGGL
                     PRVV"
BASE COUNT          384 a          694 c          645 g          279 t
ORIGIN      
        1 agccttcgcg gaagtttgaa cggatgggcg tctcgatgat ctcgcccgag ggcttggcca
       61 tcaggccgcg catgccggcg agctggcgga tctgctgcgc gaacggccag cccatcgccg
      121 tgccctcgca ggacatcgtg ctgggctgct actacctgac gcgcgaccgc gcgggcctca
      181 agggcgaggg ccgcgtcttc tcctcgaccg aggaggtgct gctcgcgctc gacgccaagg
      241 aggtcgagac gcagacgccc atcaagctgc gcctgtcggg cgacctgatc gacctgacgc
      301 aggagcacga cacgcaggac gttctgcgcg ccgccctgca ggagaacgtc cgccgcgtga
      361 ttaacaccac ggtcgggcgc gtcatcttca acgaccaggt ggccgagggg ctgccctacg
      421 tcaacggcac cctgaagaag aagggccttc agtcgctcgt caactactgc cacctccggc
      481 tcggccacga gatgacggtc aagatgctcg acgacctgaa gaacctcggc ttcctctacg
      541 cgacgaaggc cggcatctcc atcggcattg acgacctcgt cacgcccgag tccaagaaga
      601 cgctcgtggg ccaggccgac cgcgacgtga tcgaggtcga gaagcagtac cgcgacggcg
      661 tcatcaccaa cggcgagcgc tacaacaagg tcatcgccat ctggtcggag gtcaccgacc
      721 gcgtcgccaa ggagatgttc atggcgatgg atcagcgcga gaaggccaac aacgagctga
      781 acccgatcct catcatgtcg gactcgggcg cgcgcggcac cgcgcagcag atccgccagc
      841 tcgccggcat gcgcggcctc atggcgaagc cctcgggcga gatcatcgag acgccgatcc
      901 gctcgaactt ccgcgagggc ctcaacgtcc tccagtactt catctcgacg cacggcgcgc
      961 gcaagggcct cgccgacacg gccctgaaga ccgccgactc cggctacctc acgcgccgcc
     1021 tcgtggacgt ggcgcaggac gtcatcatct ccgagcccga ctgcggcacg ctcaagggca
     1081 tcagctcgac ggccatcgtc gagggcggcg aggagatcga atccttgcgc gaccgcatcg
     1141 tcggccgcac ggcgctcgaa gacgtgattg accccgtcga ggggcgcgtc atcgtggcct
     1201 ccaacgagga gatcaacgaa gacctcgcgc aggagattca gcgctccggc gtccagcgcg
     1261 tccgcatccg ctcggttttg acctgcgagt cgcgccgcgg cgtctgcatc aagtgctacg
     1321 gccgcaacct cgccacgggc cgccccgtgg acatcggcga ggccgtcggc gtcatcgccg
     1381 cccagagtat cggcgagccg ggcacgcagc tcacgatgcg caccttccac atcggcggca
     1441 ccgcgcgcct cgaagagcag tcgaagcacg aggcgcgcat ggacggcacg atcaagtacg
     1501 ttgacctcca gacggtcaag aaccgccgcg gcgagatcat cgccatgaac cgcaacggcg
     1561 ccctgaccat cattgacgag cgcgggcgcg aggtcgcccg ctaccagatc gtctacggcg
     1621 cgcatatcca cgtcgagaac ggcgcccgcg tcaaggagga tcagcagctc gccacctggg
     1681 acccgttcac cttcgccatc ctgaccgagg tcgccggcgc ggtgaagttc caggacctga
     1741 aggagggcgt caccgtagac gaggaggtgg acgaggtcac gggccagtcg cgcctcgtcg
     1801 tcaaggactc gcccgacgag aagcgccagc cgcgactcga gattcgttcg ggcaacaagg
     1861 tcttgaagac ctaccagatg ccggtgtgcg ccaacctgat ggtgcacgac ggcgacgagg
     1921 tcgcgcccgg cgacgtcatc gccaagattc cgcgcgagac gacgaagacg aaggacatca
     1981 cgggcggcct gccgcgcgtc gt
//
LOCUS       DASPKR010000252        21802 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1326193, whole genome shotgun sequence.
ACCESSION   DASPKR010000252 DASPKR010000000
VERSION     DASPKR010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 21802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21802)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21802
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1326193"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1619)
                     /locus_tag="VD968_06880"
     CDS             complement(<1..1619)
                     /locus_tag="VD968_06880"
                     /inference="COORDINATES: protein motif:HMM:NF044287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE14147.1"
                     /translation="MSASEVELFNPFPGLRPFETDEYHLFFGREGQSDELMARLQRTR
                     FLAVVGTSGSGKSSLIRAGLLPSLYGGLMAGVGSGWRVCVMRPGHDPVGNLACALSEE
                     GVLGGGGQDGELQQALIEATLRRSTLGLVDTTRQARLDAHENLLVVVDQFEELFRFRS
                     LREARGGGDDAAAFVKLLLEASAQREVPVYVVLTMRSDFLGDCAQFWGLPEAINEGQY
                     LIPRMTRDERREAITGPVAVGGGEITPSLVNRLLNDMGDSPDQLPILQHALMRTWDEW
                     AGMSPEHRARHRGQAIDLCCYEAIGGMADALSRHADEAWGELRDDRERGIAEKMFKAL
                     AERVSEDREVRRPTRLREICGAAEANQDEVAAVIEVFRREGRSFLMPPAGVELEPDTV
                     IDVSHESLIRNWQRLKKWTAEEAQSARFYARLADAAAMRDEGQGGYLADPTLQLMLDW
                     REQARPNAAWAARYRHDFSRVMAFLDESREHRDALAAREQERQRREIEQTRAFAEQQA
                     RTNRKLRLMTAAMALLLVLALGAAGYAVAKR"
     gene            complement(1609..3129)
                     /locus_tag="VD968_06885"
     CDS             complement(1609..3129)
                     /locus_tag="VD968_06885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14148.1"
                     /translation="MSFEHDIFISYAHIDNQPFGDTKGWVEQLFERLKVRLSQLLGAE
                     PIIWWDKRLQGDQYFAGEIGDSVSATLLLAPVVTPRYVKSAWCRGELEEFCRRASQTG
                     GLQPGNHSRIFKIVKTPVELERQPEALRGLLGYLFYEEDSVGRPREFSPEAAPNKDPK
                     YWARLDDLAWDIKKAIEALKPDEGRAGVATGAGAGERPMEKKVYLAEATGDVADVRDR
                     IRRELQQRNYYVLPDRELPLRMPDFGQAVSEHLSRCALSVHFVGSSYGIIPEGEEERS
                     VVRLQEELAAERARQDPSFARLVWMPQGTQPAGARQQRFVEELLTRPGAGAEIMQTSV
                     EDLKLRVMEKLNPAPKPAAQPAASPTGGLGDDVKSVYLICDNRDAGDVVPIEDYLFTQ
                     GFEVISPVFEGDSAELAQYHRESLLNCDAALIYYGSANQMWLRSKIWDLQKAQGWGRQ
                     QPMVTKAVYVSGPPNPEKQRFRTREVPLVIQSFDGFSPEALNPFVRAMQEGRADVS"
     gene            3377..4381
                     /locus_tag="VD968_06890"
     CDS             3377..4381
                     /locus_tag="VD968_06890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14149.1"
                     /translation="MAEENKSRAAPQHWARTCAPLIAIAAAVATHAVFYGSFLLCPKD
                     DKTCIRFDPADMLKGLNDKYVSDPNVYVGGAMWVLASGTHLLVSLAALLAAVHVIREG
                     IGGRVKGPRGAVTLALMLAWAAALSLVPTAIYAGGTEAPAPRLLAGTVGGVLPHINTY
                     NRLFDALGLTVGFMLAAAACAAIRRDAAEDAEGKALARRMRLLRTTLYAGAAALVVSV
                     VRLSVMLNWGGSFLPAADTAAGKQVSTLITGIVTALGIYYTILLAAIYLPAALVLRSR
                     ALSLAVVNEQPPEKQDEWLKARGLALTYTEYVPRLVAIIAPLLAAPVGSLVKAVLNVT
                     "
     gene            4433..5113
                     /locus_tag="VD968_06895"
     CDS             4433..5113
                     /locus_tag="VD968_06895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14150.1"
                     /translation="MTWEVIGLGVLLVVCGLLVARVLAQKPQEKPQEETAGAPPAVKA
                     RKTLPAFHLLTKDDLDLSAFKEQADRDAQAAKFEGRRLLAAAKTGEALTEAGTVSKAA
                     SKSLTDDSLTASVPATPATTLGGRLKVNDVVNLVSVGRDEGTAKAAGAAGAAATGGGV
                     NRAEGLVVIGLPAPGSVADKAKGEAAAAPPGAVVLAFPADKLDAFVKTLAGDSLVLAR
                     PPAAGPDQ"
     gene            complement(5072..6376)
                     /locus_tag="VD968_06900"
     CDS             complement(5072..6376)
                     /locus_tag="VD968_06900"
                     /inference="COORDINATES: protein motif:HMM:NF024241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE14151.1"
                     /translation="MGETDTDAADQFDERVSARRMDESTPGLWRRTLSLPRNVVAISL
                     VSLLNDASSEIIYPFLPLFLAATLGATPFAIGLIEGGAESVSSLLKLLSGYFSDRRGR
                     RKGLVVFGYGLASLMRPLLAFATSWPQVLFIRLTDRVGKGLRSAPRDAMIADSARAEE
                     RGLAFGFHRAMDHTGAVVGPVIGYAILSLVAANAAAPTAADYKTMFLIASVPALAAVL
                     VAVFFVRETARARGTGAAAEPPPRLSLRGFDGNFKRFLVILALFTLSNSSDSFLLLRA
                     REAGVSAAAIPLLWAALHVSKVCSSLVGGDLSDRLGRRTLIVSGWLLYAAVYARFAYV
                     SSAVEVWALFLVYGVYFGLVEGTEKALVADLVRPEQRGTAYGLYNLAFGVTVLPASLL
                     MGGLWQWKGAATAFVVSGAIGGLSALLLALLVRPGRGRARQH"
     gene            complement(6399..6632)
                     /locus_tag="VD968_06905"
     CDS             complement(6399..6632)
                     /locus_tag="VD968_06905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14152.1"
                     /translation="MEIVAIALVALVGFGVFLFVVKRVLRMAIRLAVLGAVLFALLAG
                     AVAWWWYDPLGGGAEPSGGRNRNSASRPSRPAR"
     gene            complement(6685..7125)
                     /gene="queF"
                     /locus_tag="VD968_06910"
     CDS             complement(6685..7125)
                     /gene="queF"
                     /locus_tag="VD968_06910"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR03139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HYE14153.1"
                     /translation="MSATDTAPQPFNVQGLDIRSTPREEMNLYPLDTFPYEFKGREIR
                     VRFELPEFTCVCPFSDFPDFATFRLEYVPDERCVELKSLKLYINSFRNVKIFHEHVVN
                     VILEDFVRACDPLEAHLEGDFNVRGNIKTVVRASYKKERSAVSD"
     gene            7435..7851
                     /locus_tag="VD968_06915"
     CDS             7435..7851
                     /locus_tag="VD968_06915"
                     /inference="COORDINATES: protein motif:HMM:NF013331.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 truncated hemoglobin"
                     /protein_id="HYE14154.1"
                     /translation="MLAVSVGAAARQGGEAQKSLYARLGGYDAVAAVVDDFVGRLIAD
                     KQFERFFAGHSNDSKKRIRQHIVDQFCAAAGGPCAYTGRTMRASHEGLGISEAEWDAA
                     AKHLVAALDKFKVGEREKKELLDFVTAQKADIVEKK"
     gene            complement(7924..8604)
                     /locus_tag="VD968_06920"
     CDS             complement(7924..8604)
                     /locus_tag="VD968_06920"
                     /inference="COORDINATES: protein motif:HMM:NF025013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4142 domain-containing protein"
                     /protein_id="HYE14155.1"
                     /translation="MKKTWSVLVTLTFITACGALAFALAARSAARIAAVGAQNANSAE
                     SQQNANVGANANAEAHAGHAAAAGSADERFLAEAAMSGAMEVEMGRLAPERAASEEIK
                     AFARKLVEDHTKANEALAKFAQERRMALPQSLDSKHRKEVDRLAALRGERFDSEFVRV
                     MIKDHKKDIALYEREAARGADAGARELASAILPTLREHLRMVQRIYDKALIRRAKKSA
                     PANANRQD"
     gene            complement(8610..9065)
                     /locus_tag="VD968_06925"
     CDS             complement(8610..9065)
                     /locus_tag="VD968_06925"
                     /inference="COORDINATES: protein motif:HMM:TIGR02284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA2169 family four-helix-bundle protein"
                     /protein_id="HYE14156.1"
                     /translation="MSGNSEVISTLNGLISACRDGQHGFATAADAAESAELKSLFTTY
                     SQQRAAFAGELRDEVRRLGGEAADSGSVTGAVHRGWMEVKAAATGRDDASILEECERG
                     EGAALASYRSALGVDMPAGVRAIVERQFTEVKQAHERMTSMRRASGAGA"
     gene            complement(9088..9849)
                     /locus_tag="VD968_06930"
     CDS             complement(9088..9849)
                     /locus_tag="VD968_06930"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HYE14157.1"
                     /translation="MIFPIGDDNSDRGTTPYVNYFLLAANILVFVLFQGLGSNEQFTY
                     AWATVPQEIVTGRDIAGPVLVQDPISGDPVGRIPLQPTPISVYLTLLTSMFMHGGFAH
                     LFGNMLYLWIFGDNIEDDLGHARYLVFYLLCGVLASLAHVLTNTGSYIPSLGASGAIS
                     GVLGGYILLHPHRRVRAIVLRGFLTEVPAYAAIGLWFVFQLINGLGMLGGGSQAGGVA
                     YAAHIGGFVAGVALVKIFAIGRPSRPARAAWPRQF"
     gene            complement(10020..11498)
                     /locus_tag="VD968_06935"
     CDS             complement(10020..11498)
                     /locus_tag="VD968_06935"
                     /inference="COORDINATES: protein motif:HMM:NF012593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HYE14158.1"
                     /translation="MPDKDERGATGRDAYERELTTDLKDATPDRPRGMPLHTRILIGL
                     GVGVAAGVAANQLLGGSHPGVAWAISNITEPVGQLFLRLLLMVVVPLVFSSLVVGVAG
                     IGDVRRLGRVGLKAFAYTFVISGISVVIGLTLANTLRPGRRVDAETRAGLEARYASDA
                     SKRVADATKTATTDSPLMQVVKTITPVNPVASVAGIRAGEERQTDTPDMLHLMFFAVL
                     LGIAATLIPTDVAAPLLRGLQALFEISAKIIDIIMKLAPFAVACLLFNNTARFGLDLL
                     TALAWFVATVLLGLALHMFGVYSLSVYLLSRISPMEFFRRIKTVMLTAFSTSSSNATL
                     PTALRVSEENLGVPREINSFVLTVGATANQNGTALYEGVTVLFLAQLAGVDLTLGQQL
                     GIAYFAILGGIGTAGVPSGSIPFIILMLATYNIPTALIAIILGVDRILDMCRTTLNVT
                     GDITAATYVARSEGYELLKPHVPELERRGVVASGPSSHDILD"
     gene            complement(11529..12413)
                     /locus_tag="VD968_06940"
     CDS             complement(11529..12413)
                     /locus_tag="VD968_06940"
                     /inference="COORDINATES: protein motif:HMM:NF039482.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+)/NADH kinase"
                     /protein_id="HYE14159.1"
                     /translation="MESLAVRRVGVLVKPSQPDALKTICRLAEWCAGRGIAVVGGPRL
                     ERERVMEETGCAVETVSHDEMVKTVDLVAVLGGDGTMIAAARMIGDHGTPVLGVNFGT
                     LGYLADYTVEEMVPALESVAAGAFTYDRRLMLAAEVFRGGEKLMHDRVLNDVVISKSA
                     LARIIEIETWAGRRFVNCFRADGLIISTPTGSTAYSLSAGGPVIYPSMGAVVVTPICP
                     HTLSNRPLVLPDDEEFELILKTPEEEVALTLDGQVGMALEYGDCVKVRKSRTTFNLIQ
                     ASTRNYFDVLRNKLKWGR"
     gene            complement(12566..13048)
                     /locus_tag="VD968_06945"
     CDS             complement(12566..13048)
                     /locus_tag="VD968_06945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HYE14160.1"
                     /translation="MFCPHCGNESAPELNYCKRCGGNLNPLAPAQPLPPAAPALTPRT
                     AWAVGTTMLFVIVIGMGLLLTAVNELKHSGLPPDVMKMVLISGTFILLGSVAMLVWLW
                     SRVLTGPRYLGAPPAQQQQPQQLGRPATNELGAAQFNPLSAAPSVTEHTTRTLERSRK
                     "
     gene            complement(13130..13759)
                     /locus_tag="VD968_06950"
     CDS             complement(13130..13759)
                     /locus_tag="VD968_06950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14161.1"
                     /translation="MRRLTEAEGLARLRRGKAAFQTHIKLGYEHRARDCRTCPTPGAC
                     CTDAHFVNVHVTRLEAVAIRDTLARTPRLTEDERRAVYARAREAVRRYGLAAAGDTFA
                     RTYSCPLFIAGRGCLVHQRAKPAPCVQHACYDNWEDVPPASIQWREERRIERLNTEVY
                     GAAWAWLPTPVWLTLVDPYSDGSELGRLARVWESRRTPFKNRTLPVLRA"
     gene            complement(13756..14508)
                     /locus_tag="VD968_06955"
     CDS             complement(13756..14508)
                     /locus_tag="VD968_06955"
                     /inference="COORDINATES: protein motif:HMM:TIGR00478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HYE14162.1"
                     /translation="MSRMRRERVDKLLVERGMAPSRARAQALVMAGVVLVGEQRVEKP
                     SETYPPDAPLRVKGAGDPAARYVGRGGLKLEKALREFGVDPTGLVCIDVGASTGGFTD
                     CLLQHGALRVVAVDVGHNQIDWRLRTDERVESREGVNARHLTPADFSERFDLAVMDLS
                     FISATKVLPAVVPLLKDGGRVVVLVKPQFEVGRGQVGKGGIVTDPSQQERAVEEVGAC
                     ARALGLNVLGVTESPIRGADGNREFLALYEKR"
     gene            complement(14575..15279)
                     /locus_tag="VD968_06960"
     CDS             complement(14575..15279)
                     /locus_tag="VD968_06960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14163.1"
                     /translation="MKDFQQPAQGEDPEATLVTPRFGEEETVLAQPVVPLADVGPGAG
                     ADEAAPVHAPTPAAPRRSWLLVLVLVSAFAGSVIGGAGLYLYQKGRRAPQQPPAETAT
                     EQQPAAPAETSQAAFAEPSPEAPAEAAEPPAPDAETEAKEERLAPKPAPEVKPAADRQ
                     PAPDATRKRGKKGEHENDARDEDDDGLAARRVDSIIYPTRREQRRAERRAARRAERQQ
                     SRVVDRVRGIFEGQPQ"
     gene            15462..16343
                     /locus_tag="VD968_06965"
     CDS             15462..16343
                     /locus_tag="VD968_06965"
                     /inference="COORDINATES: protein motif:HMM:NF016228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE14164.1"
                     /translation="MTKLLITGGSGFVGKNLAEFFAPRCSVVTTYLSAPPAPDSPAQS
                     IRSDVTDPEATLSALKQVSPDVVIHAAGNKNVRFCEDHPGEAYRVNAGGAQNVARACR
                     RVGARMIYLSTDLVFAGTDGNYKERDEPRPASVYGESKLEGERLALEELGDGLAVCRA
                     GGIYGKGSPLLSWLAAELGAGRRVDCFADVFNTPTYAENLAEMLEAVMAKRLSGVFHT
                     AGRERVSRYGFFQSYARAFGLDLDLLTPVSREGREAGALLQPDSSLSTGQTAGRLGVA
                     FNSVGEGFARLKARGGV"
     gene            16343..16708
                     /locus_tag="VD968_06970"
     CDS             16343..16708
                     /locus_tag="VD968_06970"
                     /inference="COORDINATES: protein motif:HMM:NF017345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYE14165.1"
                     /translation="MQRLSPYVSRQDERGGFWGITQEGWAEVNFIETAAGQVRGNHYH
                     KETRELFFIISGEIDIVVEDLRSGERTEMSVTKGDIFIIEPYELHTFHTKTDARWINM
                     LSKPHDPENPDFHQPDKKS"
     gene            complement(16726..18828)
                     /locus_tag="VD968_06975"
     CDS             complement(16726..18828)
                     /locus_tag="VD968_06975"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE14166.1"
                     /translation="MLRERLRENLSLRLALKRLAFGTLGAAVRLSARAYDFAGRVLES
                     AAANGLDLRRDWGVRPRPPRVEPFGAADFLLLTRAKEESSADRPVSTSVIVTASGGSE
                     RTFQSLRSLLREVDFGDAEIIVVDDATTGETRELLSHFGGLARVIRSEEPLGPAGARN
                     RGAAEARGRHLVFLDHDAVVEPGWLRQLVETAERDAGAGAVGSMLLGPEGRLLEAGGV
                     IWRDGELTRYGSGGSPDDRRFSFAREVDYCSGASLLVRRELFESLGGFGPLFAPAGYG
                     GADLCMGLRSLGFKVIYQPLSRAVSHRAETTTAAGREKFCDKWRGALEREHAARGGAD
                     EEAAANRKWAAQVVVFDDLIPTPDRDAGSARMMHILRALSEWAHPVFVATGKLARPEY
                     EKLLWREGIETAGALDFKRLLRRRKFRAAVLSRPAVAAAMLGPVRRAAPGLKIVYDML
                     DVHHLRATREAALTGDERAAREAEKYRRMETRTARAADLIWCGSRNDKEIMERVAPGV
                     PSVVVPTIHELHEPGPPFGARDHLLFVGSFAHRPNVDAVLFMAREVMPLVRESLAGVE
                     LLVVGGGAPAEFAEYATRGVRVLGYVPDLVPFVHGCRVFVAPIRFGSGVNGKIGEALS
                     YGLPVVTTTIGAEGWGFTPGEQVLIADGAGDFAEAVVRLYGDAALWQRLAGAGRRHIE
                     ENFTREVIGRVINDSLRE"
     gene            complement(18862..20139)
                     /locus_tag="VD968_06980"
     CDS             complement(18862..20139)
                     /locus_tag="VD968_06980"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE14167.1"
                     /translation="MPPTVVRIENVSKRYRIGGLHPGYMTFRELVGGAITAPFKRLGG
                     RGGDYQTLWALRGVSFEVEQGELIGIIGHNGAGKSTLLKILSRVTRPTTGSVEITGRV
                     GSLLEVGTGFHPDLTGRENVYLSGAILGMRRAEIRRKFDEIVAFAEMEKFVETPVKRY
                     SSGMYVRLAFSVAAHLEPEILIMDEVLAVGDAAFQQKCLDKMHDIRRQGRTIFFVSHN
                     MPAVTRLCRRVVLMEAGRVVADGGPHEIVNRYLSSGWKTGALREWGDEEAPGGTVVRL
                     RRVRVADESGETAAAVDIRRPFRIEITYDVLEAGHALLPVVELYNEEGTEVFTTHDTG
                     SEWRRRERPAGRYTSAVRVPGNLLAEGSLVAHVSVMSHSPSTVTHAREENAVAFQVVD
                     RQEGDSARGDYLGPMPGVVRPLLEWETRPEATP"
     gene            complement(20143..21036)
                     /locus_tag="VD968_06985"
     CDS             complement(20143..21036)
                     /locus_tag="VD968_06985"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE14168.1"
                     /translation="MNSKTGESAPRGLAAERPSAPQHEHGLPRVRIESEEAGVTLNLG
                     DLWAYRELLYFLTLRDIKVRYKQTLMGAAWAVIQPLMTMLIFTLVFNKFARLDTGEVP
                     YPLFAYSGLLVWTFFSSSVATGTYSLVNNSHLVTRVYFPRLFIPAASVGAGLVDMGIA
                     SVLLFALAAYYGATPTWGLVLLPAFVLLTTALALGAGVLVSALTVKYRDLRHALPFVM
                     QFWMFASPVIYPSSLVPSGWRWILFANPLAGAVEGFRSSVTGRPFDWPLVAASAAWAA
                     LLVVAGLYVFRRLEDTFADVI"
     gene            complement(21086..>21802)
                     /locus_tag="VD968_06990"
     CDS             complement(21086..>21802)
                     /locus_tag="VD968_06990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14169.1"
                     /translation="DGLSRASGRYFAYLGSDDLWLPGFLAARVRALGARPGAVLAYGH
                     CLLIDEENRVVGSTADWASYADGDARAMLRETIAPMSPTVVHRLDALARHGWREGSRL
                     EDYELYLRLAAEGEFAFDPRPLAAWRRHSSNTSRDQLMMLEEHLAAQRRVLPSQGLGE
                     DEIERLASRVRFTRAEDFARLGDKRTALRLFTQNLRAAPSARSVARAALRLFAPAGLL
                     RRRRARAELRAYGRHGRVEV"
BASE COUNT         3470 a         7323 c         7588 g         3421 t
ORIGIN      
        1 ttgcgcttgg ctacggcgta gccggccgcg ccgagcgcga gcacgagcag gagcgccatc
       61 gccgcagtca tcagccgcag cttgcggttc gtgcgcgcct gctgctcggc gaaggcgcgc
      121 gtctgctcta tctcgcgccg ctgccgctcc tgctcccgcg cggccagggc gtctcggtgc
      181 tcgcggctct cgtcgaggaa cgccatcacg cgcgagaagt cgtgccggta gcgggcggcc
      241 cacgcggcat tgggccgcgc ctgctcgcgc cagtcgagca tgagctggag cgtggggtct
      301 gcgaggtagc cgccctgccc ctcgtcgcgc atcgcggcgg cgtcggccag ccgcgcgtag
      361 aagcgcgcag actgcgcctc ctcggccgtc cacttcttca ggcgctgcca gttgcgtatg
      421 aggctctcgt gcgaaacgtc tatgaccgtg tcgggctcga gctccactcc agcgggcggc
      481 atcaggaagg agcgcccctc gcggcggaag acctcgatga cggccgcgac ttcatcctgg
      541 ttcgcctcgg ccgcgccgca gatttctcgc aggcgcgtgg gccttcgcac ctcccggtct
      601 tcgctcacgc gctcggcgag cgccttgaac atcttctcgg cgatgccgcg ctcgcggtcg
      661 tcgcggagct cgccccacgc ctcgtccgcg tggcgcgaga gggcgtcggc cataccgcct
      721 atagcctcgt agcagcagag gtctatggcc tgtcccctgt ggcgcgcgcg gtgctcgggc
      781 gacatgccgg cccactcgtc ccacgtgcgc atgagcgcgt gctggagtat cgggagctgg
      841 tctgggctgt cgcccatgtc gttcagcagg cggttaacga gcgacggcgt tatctcgccg
      901 ccgccgacgg cgacggggcc ggtgatggct tcgcgccgct cgtctcgcgt catgcgcggg
      961 atgaggtact ggccctcgtt gatggcctcg ggcaggcccc agaactgcgc gcagtcgccg
     1021 aggaagtccg agcgcatggt gaggacgaca tagacgggga cttcgcgctg ggcggaggct
     1081 tcgagcagga gcttaacgaa ggccgcggcg tcgtcgcccc cgcccctcgc ctcgcgcagc
     1141 gagcggaagc ggaaaagctc ctcgaactgg tcaacgacga cgagcagatt ctcgtgcgcg
     1201 tcgagccgcg cctgccgcgt cgtgtcaacg agcccgagcg tgctgcgcct gagcgtcgct
     1261 tctatcaaag cctgttgcag ctcgccgtcc tgcccgcctc cgccgagcac gccctcttct
     1321 gagagcgcgc acgcgaggtt gccgacgggg tcgtggcccg gcctcatcac gcagacgcgc
     1381 cagccggagc cgacgcccgc catcagcccg ccgtagagcg aaggcaggag ccccgcgcgt
     1441 atgagcgagg atttgccgct cccggaagtg ccgacgacgg cgaggaagcg cgtgcgctgc
     1501 aaccgagcca tcagctcgtc cgactgcccc tcgcggccga agaagaggtg gtactcgtcg
     1561 gtctcgaagg gtcgcagccc cggaaagggg ttgaagagtt cgacttcgct agctgacatc
     1621 ggctcggccc tcctgcatcg cgcggacgaa ggggttaagc gcctcgggcg agaaaccgtc
     1681 gaagctctgt atgacgagcg gcacctcgcg cgtgcggaag cgctgcttct cggggttggg
     1741 cgggccgctc acgtaaacgg ccttcgtcac catcggctgc tgccggcccc acccctgagc
     1801 cttctgcaag tcccatatct tcgagcgcag ccacatctgg tttgcgctgc cgtagtagat
     1861 gagcgccgcg tcgcagttga gcaggctctc gcggtggtac tgcgctagct ccgcgctgtc
     1921 gccctcgaag acgggcgaga tgacctcgaa gccttgcgtg aagaggtagt cctcgatggg
     1981 gacaacgtcg cccgcgtcgc ggttgtcgca gatgagatag acgctcttaa cgtcgtcgcc
     2041 gaggccgcct gtgggcgacg cggccggctg agccgcgggc ttgggcgccg ggttgagctt
     2101 ctccatcacg cgcagcttca ggtcttccac ggaggtctgc attatctcgg cccctgcgcc
     2161 ggggcgcgtc aaaagctcct cgacgaagcg ctgctgccgc gcccccgccg gctgcgtgcc
     2221 ctgcggcatc cagaccaagc gggcgaaaga ggggtcttgc cgggcgcgct cggcggcgag
     2281 ctcctcttgg aggcgcacga ccgagcgctc ctcctcgccc tccgggatga tgccgtagct
     2341 cgagcctacg aagtggactg acagggcgca gcgcgagagg tgctcgctca cggcctgccc
     2401 gaagtcgggc atgcggagcg gaagctcgcg gtcgggcagc acgtagtagt tgcgctgctg
     2461 aagctcccgc cttatgcggt cgcgcacgtc ggccacgtcg cccgtcgcct cggcgagata
     2521 gactttcttc tccatcgggc gctcgcccgc gcccgcgccc gtggcgacgc ctgcgcgccc
     2581 ctcgtcgggc ttcaaagcct caatcgcctt cttgatgtcc catgcgaggt cgtctaggcg
     2641 cgcccagtat ttcgggtctt tgttgggcgc ggcctcgggg ctgaactcgc gcgggcgccc
     2701 gacggagtcc tcctcgtaga agaggtagcc gagcagcccg cgcagagcct cgggctggcg
     2761 ctcgagctcc acgggcgtct tgacgatctt gaatatgcgc gagtggttgc cgggctgcag
     2821 gccgcccgtc tgcgaggctc ggcggcagaa ctcttcgagc tcgccgcggc accaggcgga
     2881 cttcacgtag cgcggcgtca ccaccggcgc gagcagcagc gtcgcggaga cgctgtcgcc
     2941 aatctcgccc gcgaaatatt gatcgccttg cagacgcttg tcccaccaga tgatgggctc
     3001 ggcccccagg agctgggaca gccgcacctt caggcgctcg aagagctgct cgacccagcc
     3061 tttcgtgtcg ccgaagggct ggttgtcaat gtgcgcgtag cttatgaaga tgtcgtgctc
     3121 gaagctcatg tgtgaatggc ctttgtttcg tcccggcgcg gggcggttgg atgaggtcgg
     3181 gagacgcggg attcttccga cgaacgcgaa agacggttcg ttcgaccggc ggcccggcgc
     3241 tacaggccgc gacttccagc gagcggcaga caagtcgttt tatacgtcgg ccgcgggggg
     3301 ctgtcaacgg gagggcttcg gcccgaaacg tttcgcccgg ccggggcata ggagggcagg
     3361 aggggcagaa gtctctatgg cggaagaaaa caaaagccgc gccgcgccgc agcactgggc
     3421 gaggacgtgc gcgccgctca tcgccatcgc cgccgccgtg gcgacgcacg cagtcttcta
     3481 cggcagcttc ctgctgtgcc cgaaggacga caagacctgc atccgcttcg accccgcgga
     3541 catgctcaaa ggtctgaacg acaagtacgt ctccgatcct aacgtttacg ttggcggcgc
     3601 gatgtgggtg ctcgccagcg gcacgcacct gctcgtcagc ctcgcggcgc tcctcgccgc
     3661 cgtccacgtc atacgcgagg gcatcggggg ccgggtcaag gggccgcgcg gcgccgtgac
     3721 gctcgcgctc atgctggcgt gggccgcggc cctctcgctg gtgccgaccg ccatctacgc
     3781 gggggggacg gaggcgcccg cgccccgcct gctggcgggg acggtcgggg gcgtgctgcc
     3841 gcacatcaac acttacaacc gcctgttcga cgccctcggc ctgacggtcg gcttcatgct
     3901 ggccgcggcc gcgtgcgcgg ccatacggcg cgacgccgcc gaggacgcgg aggggaaggc
     3961 gctggcgcgc cgcatgcggc tgctgcggac tacactctac gcgggcgcgg cggccctggt
     4021 cgtgagcgtc gtgcggctgt cggtgatgct caactggggt gggagcttcc tgcccgcggc
     4081 cgacacggcg gccggcaagc aggtctcgac gctcatcacc ggcatcgtca ccgcgctcgg
     4141 catttactac acgatactgc tcgcggccat ctacctgccg gcggcgctgg tgctgcgctc
     4201 gcgggcgctc tcgctggccg tcgtcaacga gcagccgccc gagaagcagg acgagtggct
     4261 gaaggcccgc ggcctcgcgc taacctacac ggagtacgtg ccgcggctcg tcgccatcat
     4321 cgcgcctctg ctggcagccc cggtcggctc gctcgtcaag gccgtgctca acgtgacgtg
     4381 agggcgggcg ggggcgtgga gaaactaaat ggcgaaccgc gaggataaat atatgacgtg
     4441 ggaagttatc ggcctcggcg tcctgctcgt cgtctgcggc ttgctggtcg cgcgcgtgct
     4501 cgcacagaag ccgcaggaga agccgcagga ggagaccgcg ggcgcccccc cggccgttaa
     4561 ggcccggaag actctgcccg cctttcacct gctcacgaag gacgacctcg acctgagcgc
     4621 tttcaaggag caggctgaca gggacgcgca ggccgcgaag ttcgaggggc gcaggcttct
     4681 ggcggccgcg aagacgggag aagcactgac cgaggcaggg acggtgtcga aggccgcgtc
     4741 caagtccctg acggacgact cgctgacggc ctccgtgccc gccacgcccg ctaccacgct
     4801 cggcgggcgg ctcaaagtca acgacgtggt caacctcgtc tccgtgggcc gcgatgaggg
     4861 taccgcgaag gctgcgggcg cggccggcgc ggcggcgact gggggcggcg tgaatcgggc
     4921 ggagggcctc gtcgtcatcg gcctgccagc gcccggctcg gtcgccgaca aggcgaaggg
     4981 cgaagcggcg gcagcgccgc ccggcgcggt cgtcctggcc ttccccgcag acaagctcga
     5041 cgcctttgtg aagacgttgg ccggcgactc gctagtgctg gcgcgcccgc ccgcggccgg
     5101 gcctgaccag tagcgcgagc agcagggccg agagcccgcc tatcgcgccg ctcaccacga
     5161 atgccgtcgc cgcgcccttc cactgccaga gcccgcccat cagaagcgag gccgggagca
     5221 ccgtcacgcc gaaggccagg ttgtagaggc cgtaggccgt gccgcgctgc tcgggccgca
     5281 caaggtctgc caccagcgcc ttctccgtcc cctcgaccag cccgaaatag accccgtaaa
     5341 cgaggaacag cgcccacact tcaaccgccg acgagacgta tgcgaagcgc gcatagacgg
     5401 ccgcgtagag cagccacccc gagactatca gcgtccgccg ccccagcctg tccgacaaat
     5461 ccccgccgac caaagaactg caaaccttcg agacgtgcag cgccgcccag agcagcggta
     5521 tcgcggcggc gctcacccct gcctcgcgcg cgcgcagcag caggaacgag tcggaagagt
     5581 tcgacagcgt gaagagcgcg agtatgacga ggaagcgttt gaagttgccg tcgaacccgc
     5641 gcagcgacag acgcggcggg ggctcggccg ccgcgcccgt cccgcgcgcg cgcgccgtct
     5701 cgcgcacgaa gaagacggcc acgagcaccg ccgccaacgc cggcaccgac gctatcaaga
     5761 acatcgtctt gtagtcggcc gccgtcggcg ccgcagcgtt cgccgcgaca agagacagta
     5821 tcgcgtaccc gatgacgggg ccgacgacag ccccggtgtg atccatcgcg cggtggaagc
     5881 cgaaggcgag cccgcgctct tccgctcgtg ccgagtcggc aatcatcgcg tcgcgcggcg
     5941 cgctccgcag tcccttgccg acgcgatcgg tcaagcgtat gaagagcact tgcggccagg
     6001 aggtcgcgaa cgccagcagc ggcctcatca agctcgcgag cccgtagccg aagacgacca
     6061 agcccttgcg ccggccgcgc ctgtcgctga agtagcccga taagagttta agaaggcttg
     6121 agactgactc ggccccgcct tcgatgaggc cgatggcgaa gggcgtggcg cccagagtgg
     6181 cggcgaggaa gagcggcagg aacgggtaga ttatctcgct tgaggcgtcg ttgagcaggc
     6241 tgacgaggct tatggcgacg acgttgcgcg gcaggctcag cgtccggcgc caaaggcccg
     6301 gcgttgactc gtccatccgg cgcgcgctca cgcgctcgtc aaactggtcg gccgcgtcgg
     6361 tgtcggtctc ccccatgctc tcgcgacgcc ctcgcggtct agcgggccgg gcgcgaaggg
     6421 cgcgaggccg agttgcggtt gcggcccccc gaaggctcgg cgccgccccc gagcgggtcg
     6481 taccaccacc acgcgaccgc ccccgccagc agagcgaaca gcacggcgcc caggacggcc
     6541 agccttatag ccatcctcag cacgcgcttc accacgaata agaagacgcc gaagccgacc
     6601 agtgcgacga gggcgatggc tacgatttcc ataattagct ttcggcctcc ggcgattagc
     6661 tatcagcaag accaaagctg agagctaatc gctgaccgcc gaccgctcct ttttgtaact
     6721 tgctcgaacg accgtcttga tgttgccgcg gacgttgaag tcgccttcga ggtgtgcttc
     6781 gagcgggtcg cacgcgcgca cgaagtcttc gagtatgacg ttgacgacgt gctcgtggaa
     6841 aatcttcacg tttctgaacg agttgatgta gagcttcagg ctcttcaact cgacgcagcg
     6901 ctcgtcgggg acgtactcga gccggaacgt ggcgaagtcg gggaagtccg agaaggggca
     6961 gacgcaggtg aactcgggca gctcgaagcg cacgcgaatc tcgcgcccct tgaactcgta
     7021 ggggaacgtg tcgagcgggt agaggttcat ctcctcgcgc ggcgtggaac ggatgtcgag
     7081 gccctgcacg ttgaagggct gcggcgccgt gtcggtcgct gacataatgc ttttactcct
     7141 tgatttcctt tcggccgaat cttaaccgag cgccccgcct tctccaaatt caccaagacg
     7201 tacccgaaaa ccgaaggcgg gcgcgccgtc cacttaaatt gggggaggcc gcgactgtgg
     7261 catccctcct attttatccc ggcgcgcgac gctgaatccg aacgcgcctc aacggccgta
     7321 attgtctgcg taacctcgcc gcgattttaa acccccggcg cccgagggcg gccggcagga
     7381 gggagcagca tggtgcgacg gacgaccttt aagacacttt cactcctaac gctattgcta
     7441 gcggtaagcg tcggcgccgc ggcccgtcag ggcggcgagg cgcagaagtc gctctacgcg
     7501 cgcctgggcg gctacgacgc cgtcgccgcc gtcgttgacg acttcgtcgg gcgcctcatc
     7561 gccgacaaac agttcgagcg cttcttcgcg ggccacagca acgactcgaa gaagcggata
     7621 cgccagcaca tcgttgacca gttctgcgcg gcggcgggcg gcccatgcgc ctacacgggc
     7681 cgcacgatgc gcgcctcgca cgaggggctg ggcataagcg aggccgagtg ggacgccgcc
     7741 gcaaagcacc tcgtcgccgc gctcgacaag ttcaaggtcg gcgagcgcga gaagaaggag
     7801 ctgctcgact tcgtcacggc ccagaaggcc gacatcgtgg agaagaagtg aggcgggcgc
     7861 gggttaaaaa gagagggttg gcgacggcgg cgccgtcgcc aaccctcgac gcaacttcgc
     7921 cccttagtcc tgccggttgg cgttggccgg ggccgacttc ttggcgcggc gtatgagcgc
     7981 cttgtcgtag atgcgctgca ccatccgcag gtgctcgcga agcgtcggga ggatggccga
     8041 ggcaagctcg cgcgccccgg cgtcggcgcc gcgcgcggcc tcgcgctcgt agagcgctat
     8101 gtccttcttg tgatccttaa tcatcacgcg gacgaactcg ctgtcgaagc gctcgccccg
     8161 cagcgccgcc agcctgtcaa cttccttcct atgctttgag tcgagcgact gcggcagcgc
     8221 cattcgccgc tcctgcgcga acttggcgag cgcctcgttg gccttcgtgt ggtcttcgac
     8281 gagcttgcgc gcgaacgcct tgatctcctc gctcgccgcg cgctccgggg cgagccgacc
     8341 catctcgacc tccatcgccc cgctcatcgc cgcctcggcg aggaagcgct cgtccgccga
     8401 gccggcggcg gccgcgtgcc ctgcgtgggc ctcggcgtta gcgttcgcgc cgacgttcgc
     8461 gttctgctgc gactcggccg agttggcgtt ctgtgccccg acggcggcga tgcgtgcggc
     8521 gctgcgagcg gcgagcgcga acgcgagcgc cccgcacgcc gtgatgaacg tgagggtgac
     8581 cagcaccgac caggtcttct tcatagcttt tatgcccccg cgccgctcgc gcgccgcatc
     8641 gaggtcatgc gctcgtgggc ctgcttgact tcggtgaact gccgctcgac tatcgcgcgc
     8701 acgccggccg gcatgtcaac gccgagcgca gagcggtagc tggcgagcgc cgcgccctcg
     8761 ccgcgctcgc actcctcgag aatcgaggcg tcgtcgcggc ccgtcgcggc cgccttcact
     8821 tccatccagc cgcggtgcac tgcgcccgtg acgctgcccg agtcggcggc ctcgccgccg
     8881 aggcggcgca cctcgtcccg cagctcgccg gcgaacgccg cgcgctgctg cgagtaggtc
     8941 gtgaagagcg acttgagctc tgcgctctcc gccgcgtcgg ccgccgtggc gaagccgtgc
     9001 tggccgtcgc ggcaggccga tatcaagccg ttgagcgtcg aaatgacttc tgagttgccc
     9061 gacatacctt cccccttgcg gccgcgttta gaactgccgc ggccacgccg cgcgcgccgg
     9121 ccgcgacggg cggccgatcg cgaatatctt gacgagcgcc acccccgcga cgaagccgcc
     9181 tatgtgcgcc gcgtaggcca cgccgcccgc ctgcgagccg ccgcccagca tgccgagccc
     9241 gttgattagc tggaagacga accagagccc tatggccgcg taggccggca cctccgtcag
     9301 gaagccgcgc aaaacgattg cgcgcacgcg cctgtgcggg tgcagcagta tgtaaccgcc
     9361 gagcacgccc gagatcgcgc ccgacgcgcc gaggctcggt atgtacgagc ccgtgttcgt
     9421 cagaacgtgc gcgagcgagg cgagcacgcc gcacaggagg tagaagacga ggtagcgggc
     9481 gtggcccaag tcgtcctcta tgttgtcgcc gaaaatccag aggtagagca tgttgccgaa
     9541 caggtgcgcg aacccgccgt gcatgaacat cgaggtcagc agcgtcagat agacggagat
     9601 gggcgtcggc tgcaagggta tgcggccgac ggggtcgccg cttatcgggt cttggacgag
     9661 gacgggcccc gcgatgtccc tgcccgtcac tatctcctgc ggcacggtcg cccaggcgta
     9721 ggtgaactgc tcgttcgagc cgagcccttg gaagagcacg aagacgagta tgttagcggc
     9781 gagcaggaag tagttgacgt agggcgtcgt gccgcggtcg ctgttgtcgt cgccgatggg
     9841 aaaaatcatt ccgacgcctt cctccccgca gaggggttcc tgagagacgg caccacgccc
     9901 tgtcgcccgg gccgcaagct tctgacagtc gtctcccgga attgttgcgg gagtgtcaag
     9961 aacagttagc agccatcatc aaagacgaaa gctgattgct gatagctggc acccgactgc
    10021 taatcaagta tgtcgtggct gctcgggccg ctggcgacga cgccgcggcg ctctagctcc
    10081 gggacgtgcg gcttgagaag ctcgtagccc tcgctgcggg cgacgtaagt tgcggccgtg
    10141 atgtcgcccg tgacgttcag cgtcgtgcgg cacatgtcta gtatccggtc aacgccgagg
    10201 atgatcgcga ttagcgccgt ggggatgttg taggtggcga gcataaggat tatgaagggt
    10261 atcgagccgg acgggactcc ggccgtccct atgccgccga gaatggcgaa gtaggcgatg
    10321 cctagttgct ggccgagcgt caggtcaacg ccggcgagct gcgcgaggaa gaggactgtc
    10381 acgccctcgt agagcgccgt gccgttctgg ttggcggtcg cgcccaccgt gaggacgaag
    10441 ctgtttatct cgcgcggcac gcccagattc tcctccgaga cccgaagcgc cgtcgggagc
    10501 gtggcgttcg aggaggaggt cgaaaaggcc gtgagcatca ccgtcttgat gcggcggaag
    10561 aactccatcg ggcttatgcg cgagagcaga tagaccgaga gcgaatagac gccgaacatg
    10621 tggagcgcga ggcccagaag caccgtcgcc acgaaccacg cgagcgccgt aagcaaatcg
    10681 agcccgaagc gcgccgtgtt gttgaacagg aggcacgcga cggcgaacgg cgcgagcttc
    10741 attatgatgt ctattatctt ggccgagatt tcgaacagcg cctgaagccc gcgcagcagc
    10801 ggcgcggcca cgtccgtggg gatcagtgtg gcggctatgc cgaggagcac cgcgaagaac
    10861 atcaggtgca gcatgtcggg cgtgtcggtc tgccgctcct cgccggccct tatccccgcg
    10921 accgatgcga cggggttgac gggcgtgatg gtctttacga cctgcatgag cggcgagtcg
    10981 gtcgtcgccg tcttcgtcgc gtcggccacg cgcttcgagg cgtccgaggc gtagcgcgct
    11041 tcgaggccgg cgcgcgtctc ggcgtcaacg cgcctacccg gccgcaaggt gttcgccagc
    11101 gtgagcccta tgacgaccga gatgccggag atgacgaacg tgtaggcgaa ggccttgagg
    11161 ccgacgcggc cgagcctgcg aacgtcgcct atccccgcga ccccgacgac gagcgacgag
    11221 aagacgagcg gcacgacgac catcaggagc agccgcagga agagttgccc cacgggctcc
    11281 gtgatgttgc ttatcgccca cgcgacgccg gggtgcgagc cgccgagcag ttggttcgcc
    11341 gccacgcccg ccgcgacgcc tacgccgaga ccgatgagta tgcgcgtgtg cagcggcatc
    11401 ccgcgcggcc tgtcgggcgt cgcgtccttc aggtcggtcg tcagctcgcg ctcgtaggcg
    11461 tccctcccgg tcgcgcccct ctcgtctttg tcaggcatga ctctctaaag cggcgacgct
    11521 gcccgccgtc acctccccca tttgagcttg ttgcgcagaa cgtcgaagta gttgcgcgtg
    11581 ctggcctgta tcaggttgaa ggtcgtgcgg ctcttgcgga ctttgacgca gtcgccgtac
    11641 tcgagcgcca tgccgacctg cccgtcgagc gtgagcgcga cctcctcctc gggcgtcttt
    11701 aaaataagct cgaactcctc gtcgtccggc agcaccagcg ggcggttcga gagtgtgtgc
    11761 gggcagatgg gggtgacgac gacggcgccc atcgaggggt agatgacggg gccgccggcc
    11821 gagaggctgt aggccgtcga gcccgtgggc gtcgagatta tcagcccgtc ggccctgaag
    11881 cagttgacga acctcctgcc cgcccacgtc tctatctcga tgatgcgcgc cagcgccgac
    11941 ttcgagatga ccacgtcgtt taagacgcgg tcgtgcatga gcttctcgcc gccgcggaag
    12001 acctcggccg cgagcatgag ccgccggtcg taagtgaacg cgcccgcggc gaccgactca
    12061 agggccggca ccatctcctc cacggtgtag tccgcgaggt agccgagcgt gccgaagttt
    12121 acgccgagga cgggggtgcc gtggtcgcct atcatgcgcg cggcggcgat catcgtcccg
    12181 tcgccgccga gcacggcgac gaggtcaacc gtcttcacca tctcgtcgtg cgagacggtc
    12241 tcgacggcgc agcccgtctc ctccatcacc cgctcgcgct cgaggcgcgg cccgcccacg
    12301 accgctatcc cgcggcccgc gcaccactcg gccaggcggc agatggtctt cagcgcgtcg
    12361 ggctggctcg gcttgacgag cacgccgacg cggcggacgg caagcgactc cataagacag
    12421 taggcagaaa gcagaaggca gaaggcagaa gaagaaactt cttcgcctaa aggtaaagcc
    12481 ttgaattacg acggaaaact tggccggatg atagccgcgc gcgcggcggg gtgtcaataa
    12541 aacgtcgggc gcgggcgcgc gcccgtcact ttcttgagcg ttcgagcgtg cgtgtggtgt
    12601 gctcggtgac ggaaggggcg gccgagagcg ggttgaactg tgccgcgccc agctcgttcg
    12661 tcgcggggcg gcccaactgc tgcggctgtt gctgctgcgc ggggggcgcg cccaggtagc
    12721 gcgggcctgt gagcacgcgc gaccagagcc agacgagcat cgcgacgctc ccgagcagta
    12781 tgaacgtgcc ggagattaaa accatcttca taacgtccgg cggcaggccg ctgtgcttaa
    12841 gctcgttgac ggccgtgagc aggagcccca tgccgatgac gatgacgaag agcatcgtgg
    12901 tgccgacggc ccacgccgtg cgcggcgtga gcgcgggggc agcggggggc agcggctgcg
    12961 cgggggcgag agggttgagg ttgccgccgc agcgcttgca gtagttaagc tcgggcgcgg
    13021 actcgttgcc gcagtgtggg cagaacatgc tccctccgtc cccttcgtgc gaatggttgt
    13081 tgctaagccg tctgaggcag gcgccgttgt tctctgcgcc cgctcccgtt tacgcgcgca
    13141 gcacgggcaa agttctgttc ttgaacggcg tgcgtcgtga ctcccagacg cgcgccagcc
    13201 gcccaagctc cgagccgtcc gagtaggggt caacgagcgt cagccacacg ggcgtcggga
    13261 gccacgccca cgccgcgccg taaacttccg tgttgaggcg ctcgatgcgc cgctcctcgc
    13321 gccactggat tgacgcgggc ggcacgtcct cccagttgtc gtagcaggcg tgctgcacgc
    13381 acggcgcggg cttggcgcgc tggtggacga gacagccccg gcccgcgatg aagagtgggc
    13441 aggagtacgt ccgtgcgaag gtgtcacccg cggccgcgag gccgtaacgc cgtaccgcct
    13501 cgcgcgcccg cgcatagacg gcgcgcctct catcttcggt cagtcgcggc gtgcgcgcta
    13561 gggtgtcgcg gatggctacg gcttcgaggc gtgtgacgtg gacgttcacg aagtgcgcgt
    13621 ccgtgcagca ggcgcccggc gtcgggcacg tgcggcagtc gcgcgccctg tgctcgtagc
    13681 cgagcttgat gtgagtctgg aacgcggcct tcccgcgcct cagccgcgcc agcccctccg
    13741 cctccgtcag tcttctcatc tcttctcgta gagcgccaga aactcgcggt tgccgtctgc
    13801 gccgcgtatc ggcgactcgg tgacaccaag gacgttgagg ccgagcgcgc gcgcgcaggc
    13861 gccgacctcc tcgactgcgc gctcctgctg cgaggggtct gtgacgatgc cgcccttgcc
    13921 tacctgcccg cgccccacct cgaactgcgg cttgacgagc acgacgacgc gcccgccgtc
    13981 tttgagcagc gggacgacgg ccggcagcac cttcgtcgcc gagatgaagg acaagtccat
    14041 gacggcgagg tcgaaccgct cggagaagtc ggcgggcgtg aggtggcgcg cgttgacgcc
    14101 ctcgcgggat tcgacgcgct cgtccgtgcg cagccgccag tctatttggt tgtggcccac
    14161 gtccacggcg acgacgcgca gcgcgccgtg ctggaggagg cagtctgtga agccgccggt
    14221 cgaggcgccg acgtctatgc agaccagccc cgtcgggtca acgccgaact cccgcagcgc
    14281 cttttcgagc ttgagcccgc cgcggcccac gtagcgcgcg gccgggtcgc ccgcgccttt
    14341 gacgcgcagc ggcgcgtccg gcgggtaagt ctccgaaggc ttctcgacgc gctgctcgcc
    14401 gacgagcacc acgcccgcca tcacgagcgc ctgcgcgcgc gcgcgagaag gcgccatgcc
    14461 ccgctccacc agaagcttgt caacgcgctc gcgccgcatg cgcgacatga taaacgatga
    14521 gcgggaaaga agtcagaagg cagaaggcag gagtcagaag aaagaccttc ctccttattg
    14581 gggctggcct tcgaagatgc cgcggacgcg gtcaacgacg cgggactgct ggcgctcggc
    14641 gcggcgtgcg gcccggcgct cggcgcggcg ctgttcgcgg cgggtggggt agatgattga
    14701 gtcaacgcgg cgcgcggcga ggccgtcgtc atcctcgtcg cgggcgtcgt tttcatgttc
    14761 gcccttctta ccgcgcttgc gggtggcgtc gggcgcgggc tggcggtcgg ccgccggctt
    14821 tacttctggg gcgggcttcg gcgccaggcg ctcttctttc gcttcagtct cggcgtcggg
    14881 cgcgggcggt tcggcagcct cggccggcgc ctcgggcgag ggctccgcga acgcggcctg
    14941 tgaagtctcg gcgggagccg cgggctgttg ttcggtggcc gtctccgcgg gcggctgttg
    15001 cggcgccctc cggcccttct ggtacaggta caggccggct ccgccgatga cgctcccggc
    15061 gaaggccgag acgagcacga gcacgagcag ccaggagcgg cgcggtgccg cgggcgtcgg
    15121 cgcgtgaacg ggcgcggctt cgtcggctcc cgcccccggc ccgacgtcgg cgagcggcac
    15181 gacgggctga gcgagcacgg tctcttcttc gccgaagcgc ggcgtgacga gcgtggcttc
    15241 cgggtcttcg ccttgcgcgg gttgttgaaa gtctttcatc ggctctccga aattcggccc
    15301 ccgccttctc gaacaaccgg gctgtttccg cagccgggcg ggaagagcgg aggccgcaag
    15361 tttacaacgc tttgatgctt cagggtgggc gaccgggttc gcaaaaagat tacaaattag
    15421 ttgcgtttgg cgggacgcga ttaaataatt gtcgggtgag gatgaccaag ttattgataa
    15481 caggcggcag cggatttgtc ggaaaaaacc tggctgaatt cttcgccccc cggtgctcgg
    15541 tcgtaacgac ttacctgagc gcgcccccgg cccccgattc acccgcacaa tcaatccggt
    15601 cggacgtcac agacccggag gcgaccctct ccgccctcaa gcaggtgtcg ccggacgtgg
    15661 tcatccacgc ggccggcaac aaaaacgtca ggttttgtga agaccacccg ggcgaggctt
    15721 acagggtgaa cgccggcggc gcgcagaacg tcgcgcgcgc atgccgccgc gtaggtgcga
    15781 ggatgattta cctctccacg gatttggtct tcgccggcac ggacgggaac tataaggaac
    15841 gcgacgagcc gcgccccgcc tccgtttacg gcgagagcaa gctggagggc gagaggctgg
    15901 cccttgaaga gttgggcgac gggctcgccg tctgccgggc gggcggaatt tacggcaagg
    15961 ggtcgcctct gctaagttgg ctcgcggccg agctcggcgc cggacgccgc gtggactgtt
    16021 tcgcggacgt gttcaacacg ccgacctacg cggagaacct ggcggagatg ctggaggccg
    16081 tcatggcgaa gcgcctctcc ggggtgtttc acacggccgg gcgcgagcgc gtcagccgct
    16141 acgggttttt tcagtcatac gcccgcgcct tcggcctcga cctcgatttg ctcacccccg
    16201 tttcgcgcga agggcgggag gcgggggctt tacttcagcc ggactcttcg ctgtcaacgg
    16261 ggcagaccgc cgggaggcta ggggtcgcgt tcaactccgt gggcgagggc ttcgcccggc
    16321 tgaaggcgcg cggaggcgtt tagtgcagag actttcccct tacgtatcaa ggcaggacga
    16381 gcgcggcggg ttctggggaa tcacgcagga gggctgggcc gaggtcaact tcatcgagac
    16441 cgcggcgggg caggtgcgcg gcaaccacta ccacaaggag acgcgcgagc ttttcttcat
    16501 catctccggc gagatagaca tcgtcgttga agacctacgc tcgggcgagc gcacggagat
    16561 gtccgtcacg aagggcgaca tcttcatcat agagccctac gagctgcaca ccttccacac
    16621 caagaccgac gcccgttgga taaacatgct ctccaagccg cacgaccccg aaaaccccga
    16681 cttccaccag cccgacaaga aaagctgaac tcaatcgaag attgactatt ccctcagcga
    16741 gtcgttgatg acgcgcccga tgacctcgcg cgtgaagttc tcttcgatgt gacggcggcc
    16801 cgcgcccgcg agcctctgcc agagcgcggc gtcgccgtag agccgcacga ccgcctcggc
    16861 gaagtccccg gccccgtccg caatcaagac ctgctcgccc ggcgtgaagc cccagccctc
    16921 ggcccctatg gtcgtcgtga ctacggggag gccgtatgag agcgcctcgc ctatcttgcc
    16981 gttgacgccc gacccgaagc gtatgggcgc gacgaagacg cggcagccgt gcacgaaggg
    17041 gacgaggtcg gggacgtagc cgagcacgcg gacgccacgc gtggcgtact ccgcgaactc
    17101 cgccggcgcg ccgccgccga cgaccagcag ctccaccccc gcgagagact cccggactag
    17161 cggcatcact tcgcgggcca tgaagagcac ggcgtccacg ttcgggcggt gggcgaagct
    17221 gccgacgaag agcaggtgat cgcgcgcgcc gaagggcggc cccggctcgt gcaactcgtg
    17281 gatggtcggg acgacgaccg aggggacgcc cggcgcgacg cgctccatga tctccttgtc
    17341 gttgcgcgag ccgcaccaga tgaggtcggc ggcgcgggcc gtgcgcgtct ccatgcggcg
    17401 atacttttcg gcctcgcgcg ccgcgcgctc gtcgcccgtc agcgcggcct cgcgcgtcgc
    17461 gcgcaggtgg tgcacgtcga gcatgtcata gacgatcttc agccccggcg cggcgcggcg
    17521 caccggcccg agcatggcgg cggcgacggc cgggcggctc agcaccgccg cgcggaactt
    17581 gcggcggcgg agcagccgct tgaagtcgag cgcgcccgcc gtctcaatgc cctcgcgcca
    17641 gagcagcttc tcgtactcgg gccgcgcgag cttgcccgtc gcgacgaaga ccgggtgcgc
    17701 ccactcggag agagcacgca gtatgtgcat catgcgggcg ctgccggcgt cgcggtctgg
    17761 cgtcgggatg aggtcgtcga agacgacgac ctgcgcagcc cacttcctgt tggccgcggc
    17821 ctcttcgtcc gccccccccc gcgccgcatg ctctcgttcg agcgccccgc gccacttgtc
    17881 gcagaacttc tcgcggccgg cggccgtcgt tgtctccgcc cggtggctta cggcgcgcga
    17941 gagcggctgg tagatcacct tgaagccgag cgagcgcagg cccatgcaga ggtctgcgcc
    18001 cccgtagccg gcgggcgcga agagcgggcc gaagccgccg aggctctcga acaactccct
    18061 gcggacgagc agcgaggcgc ccgagcagta gtcaacctcg cgcgcgaacg agaagcgccg
    18121 gtcgtcgggc gagccgcccg agccgtagcg cgtcagctcg ccgtcgcgcc agatgacgcc
    18181 gcccgcttcg agcaggcgcc cttcggggcc gaggagcatg gagccgactg cgcccgcgcc
    18241 cgcgtcgcgc tcggccgtct cgacgagctg cctgagccag ccgggctcta cgaccgcgtc
    18301 gtggtcgagg aagacgaggt ggcggccgcg cgcttcggcc gcgccgcggt tgcgggctcc
    18361 cgcggggccg aggggctctt cgctgcgtat gacgcgggcg aggccgccga agtgtgagag
    18421 caactcgcgc gtctcgccgg tcgtggcgtc atcaacgacg attatttcgg cgtccccgaa
    18481 gtcaacctcg cgcaggagcg agcgcaggga ttggaaggtg cgctcgctcc ctccggaggc
    18541 cgtgacgatg acggaggtgc tgacggggcg gtcggcggag ctttcttctt tcgcgcgtgt
    18601 caggaggagg aagtcggccg cgccgaaggg ctcgacgcgc gggggccgcg ggcgcacgcc
    18661 ccagtcccgg cggaggtcga ggccgttggc ggctgcgctc tccaggacgc gcccggcgaa
    18721 gtcgtaggcg cgcgccgaaa gccttaccgc cgcgccgagc gtgccgaagg cgaggcgctt
    18781 gagcgcgagc ctcagcgaca gattttcgcg tagcctctct ctcaacaacg ggcgagacct
    18841 cccgcgcgtc gcggcgcgcc gttacggggt cgcttccggg cgcgtctccc attcgagcag
    18901 cgggcggacg acgccgggca tcgggccgag gtagtcgccg cgggccgagt cgccctcctg
    18961 ccggtcaacg acctggaagg cgacggcgtt ctcctcgcgc gcgtgcgtga cggtggaggg
    19021 cgagtgcgac atcacggaga cgtgcgcgac gaggctgccc tcggcgagca ggtttccggg
    19081 gacgcgcacg gcgctcgtgt agcggcccgc ggggcgctcg cggcgtcgcc actcggagcc
    19141 ggtgtcgtgc gtcgtaaaga cctccgtgcc ttcctcgttg taaagctcga cgacgggcag
    19201 cagcgcgtgg cccgcttcga gcacgtcgta tgtgatctcg attcggaagg ggcggcgtat
    19261 gtcaacggcc gcggcggtct cgccgctctc gtcggcgacg cgcacgcgcc gcagcctcac
    19321 gaccgtgccg ccgggcgcct cctcgtcgcc ccactcgcgc agcgcacctg tcttccagcc
    19381 ggagctaagg tagcggttga ctatctcgtg cggcccgccg tcggccacga ctcggcccgc
    19441 ctccatcagc accacgcgcc ggcacagccg cgttacggcc ggcatgttgt gcgagacgaa
    19501 gaagatggtg cggccctgcc ggcgtatgtc gtgcatcttg tcgaggcact tctgctggaa
    19561 cgctgcgtcg cccacggcca gcacctcgtc catgatgagg atttcgggct cgaggtgcgc
    19621 ggcgaccgag aaggcgaggc ggacgtacat gcccgaggag tagcgcttga cgggcgtctc
    19681 gacgaacttc tccatctcgg cgaaggcgac tatctcgtcg aacttgcgcc gaatctccgc
    19741 gcgccgcatg ccgagtatgg cgccgctcag gtaaacgttc tcacggcccg tgaggtctgg
    19801 gtggaagccg gtgccgactt cgaggagcga accgaccctt cccgtaatct cgacgctccc
    19861 cgtcgtcggc cgcgtcacgc gcgagaggat tttcagcagc gttgacttgc ccgcgccgtt
    19921 gtggccgatg atgccgatta gctcgccctg ttcgacctcg aagctcacgc cgcgcagcgc
    19981 ccagagagtc tggtagtcgc cgccgcggcc gcccaagcgc ttgaacggcg ccgtgatcgc
    20041 cccgcccacc agctcgcgga aggtcatgta gccggggtgc agcccgccta tgcggtagcg
    20101 cttgctcacg ttctcgattc tgacgactgt cggcggcatc actcagataa cgtctgcgaa
    20161 ggtgtcttcg aggcggcgga agacgtagag gcccgcgacg acgagcaggg cggcccaagc
    20221 ggccgaggcg gcgacgagcg gccagtcgaa gggccgcccc gtcacggacg agcggaagcc
    20281 ctcgaccgcc ccggccaggg ggttcgcgaa tagaatccag cgccacccgc tcggcactag
    20341 gctcgaaggg tatatgactg gcgaggcgaa catccagaac tgcatcacga aggggagcgc
    20401 gtgccggagg tcgcggtact tcaccgtgag cgccgagacc agcacgcccg cccccaaagc
    20461 taacgccgtc gtcagcagga cgaaggccgg caggagcacc aggccccacg tcggcgtcgc
    20521 gccgtagtag gccgcgagcg cgaagaggag gacggaggct atccccatgt caacgagccc
    20581 cgcgccgacc gaggccgccg ggatgaagag gcgcgggaaa tagacgcggg ttacgaggtg
    20641 cgagttgttg acgaggctgt aggtgccggt cgcgaccgag cttgagaaga acgtccagac
    20701 gagcagcccc gagtaggcga agagcgggta ggggacttcg cccgtgtcga gccgcgcgaa
    20761 cttgttgaag acgagcgtga atatcagcat cgtcatcaac ggctgtatga cggcccaggc
    20821 ggcgcccatg agcgtctgct tgtagcgaac ctttatgtcg cgcagcgtca ggaagtagag
    20881 aagctcgcgg taggcccaga ggtcgccgag gttgagcgtg acgccagcct cctccgactc
    20941 tatgcggacg cgcgggaggc cgtgctcgtg ctgcggggcg gaggggcgct cggccgcgag
    21001 gccgcggggc gcgctttcgc ctgtcttaga gttcatccgg ttcgggccca agacgggaga
    21061 ctttagccta tccggcctgc tttcgtcaca cttcgacgcg gccgtggcgc ccgtaggcgc
    21121 gcagctcggc gcgcgcgcgg cgccgcctca aaaggccggc cggggcgaac agtcgcaggg
    21181 ccgcgcgagc gaccgagcgg gccgagggcg ccgcgcgaag gttttgcgta aagagccgga
    21241 gcgccgtccg cttgtcgccg aggcgggcga agtcttcggc gcgcgtgaac cttacgcgcg
    21301 aggcgaggcg ctcaatttcg tcttcgccca ggccctgcga cgggagcacg cggcgctgcg
    21361 ccgcgaggtg ctcttcgagc atcatcagct ggtcgcggct cgtgttcgac gagtggcggc
    21421 gccacgcggc gagcggccgc gggtcgaagg cgaactcgcc ctcggccgcg agccgcaggt
    21481 agagctcgta gtcttcgagc cgcgagcctt cgcgccagcc gtggcgcgcg agcgcgtcga
    21541 ggcggtgcac gacggtcggg ctcatcggcg ctatggtctc ccgcagcatc gcgcgcgcgt
    21601 cgccgtcggc gtaagaggcc cagtcggcgg tcgagccgac gacgcggttc tcttcgtcaa
    21661 tcagaaggca gtggccgtag gcgagcacgg cgccggggcg cgcaccgagc gcgcgcacgc
    21721 gcgccgcgag gaagccgggc agccagaggt cgtcggagcc gaggtaagcg aagtagcgcc
    21781 ccgaggcgcg cgagagcccg tc
//
LOCUS       DASPKR010000253         5428 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1197051, whole genome shotgun sequence.
ACCESSION   DASPKR010000253 DASPKR010000000
VERSION     DASPKR010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5428)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5428
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1197051"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            107..1087
                     /locus_tag="VD968_06995"
     CDS             107..1087
                     /locus_tag="VD968_06995"
                     /inference="COORDINATES: protein motif:HMM:NF014052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein M"
                     /protein_id="HYE14170.1"
                     /translation="MATSDKFIKERKGAWQRLEDLLTLLDRSSLRRLHREEVRELGRI
                     YRRTASDLAIARAESRDPRLVNYLNSLVIRAHGRIYRADSSEGRNRLRRFFARDFPRV
                     FRRTWRYTALSFAVFMVFATFTFLGTWRDPEFSALAGVPPSARQRVLRQKPRWWERIN
                     RANQVEGAGIATNNIQVTFNAFALGALFGLGTLAVMALNGASIGAWLALTHHAGYSHE
                     LLTFMAGHGVIELTCIFIAGGAGLLFGTAVLFPGDLSRLDNLRLRGREAIQLIMGCVP
                     LLAVAAAIEGFISPAAIPPAMKLAVAAVTGVALYSYLLLAGRDEAADERA"
     gene            complement(1097..2449)
                     /locus_tag="VD968_07000"
     CDS             complement(1097..2449)
                     /locus_tag="VD968_07000"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HYE14171.1"
                     /translation="MRPSGRRANIHMRFVFTKLFYLLLAAGFVPLSLSWGRPWLRWAS
                     FAYDLALLVVAIVDARTSRLPEGVEITRELGGRFHIGAETEVRVRVVNHTRRALRLKI
                     KDEHPPELVLAASREAELRLGPQEAGSVEYALRPPRRGRFEFGRVAVRFVSRLGLVWC
                     EARAGEPETVKVYPNLRRAREAELKALGARSLVAAQRRAAWRGEGRDFESLREYVPGD
                     ELRHVSWSATARRGKLTTRQYQIERDQTVLIALDAGRLMTGRVENETKFDSAIHAALA
                     LMSAAARAGDHAGLVVFGRRVKSYVPPARGREQTDAVLEALHAVEPELIEPSYTRAFE
                     FVAANCKRRSFVVVLTDLVDEEGSRELLTSLRILRPRHLPLVTTIADRDLRSAVRDAP
                     ATFQDLFAQSVAEEIMHQREAALRLVEAQGGLALDVTTAALVPSLLETYIRVKERGML
                     "
     gene            complement(2446..3402)
                     /locus_tag="VD968_07005"
     CDS             complement(2446..3402)
                     /locus_tag="VD968_07005"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052689 - carboxylic ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipase family protein"
                     /protein_id="HYE14172.1"
                     /translation="MADGKKEPPKITLANLRPPYPEGAVYRYFENADAHPFDGGSKEF
                     RMVNAWWLCEIATLAYSDFAEFGRVLGAKAGLNSTADFSQGSTQCFAVNAEGFTVVAF
                     RGTETSPRKRPREDFGEVFADLLTDFDALPVQSDLGGRVHHGFKRAVDSVWGGGLGEF
                     LSGLGPRVTVWLTGHSLGAALATLAAAKCERLDGLYTFGSPRAGDGAFARALDRRLSQ
                     SGIEHHRFVNNRDVVTTLPPPGIYEHGGALKHIGADGRIGGGPSLASRVGNFLRGALT
                     LPFDATGRLKPHLVNLIPGALEDHVPTLYATHVWNAHAGGAG"
     gene            complement(3435..4388)
                     /locus_tag="VD968_07010"
     CDS             complement(3435..4388)
                     /locus_tag="VD968_07010"
                     /inference="COORDINATES: protein motif:HMM:NF040105.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HYE14173.1"
                     /translation="MLQYVPTTVEHIQTELRKVVVGQDAVVEQVLVALLAEGHALVEG
                     VPGTAKTLLVKTLARIVGAGFSRIQFTPDLMPSDITGTNVFNPSTATFSLRRGPVFTD
                     VLLADEINRTPPKTQAALLEAMEERQVTIDGEVHKLSPVFTVFATENPIEYEGTYPLP
                     EAQLDRFLLKIIIGYPTREEEERIVGNWDEGFSARRLEQIDIRPLPEPDAVVQCRAEV
                     RRSRMEPGVQRYLVELVRRTREHPSVAYGASPRAAVALLLCAKALSAMRGRDFATPDD
                     VRDIARPALRHRLSLRAEAELDGATPDSVVADILNTVEVPR"
     gene            complement(4479..>5428)
                     /locus_tag="VD968_07015"
     CDS             complement(4479..>5428)
                     /locus_tag="VD968_07015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14174.1"
                     /translation="VTRSRFAARLQVAEAEVLGSGYGQPPPPKPDASPAPTYPDEGED
                     DEVFWEDEEEPPPPPAPAARTGPGSEPPPAAAPYEPQAPVVHLLDGRHGPGALLVDYA
                     YGRGRVVVLSDPYIVSNGGINRADNLILATNVVTSGGGPIAFDEYHQGYGGARNELFS
                     YFAGTPILWMFAQAGVIVLAVVWTRGRRFARPLPAPRVDRRSKLEFVASMAELQQRAR
                     AYDLAVENIYARTRRALARYAGAAPDARPEQLAARVAARSGRDPRPIEELLRECEAAA
                     QGQPLSPRRALALARGLRELERDLGILMRSREIRQAEAR"
BASE COUNT          790 a         1874 c         1913 g          851 t
ORIGIN      
        1 cctctctcct cccgcgcgcg tgcggattgt agaatgcgtg atgcggattg gaaaagcgta
       61 tcgtgcggct gttatgattc ggcgccggtc tgctctgctt tgaaagatgg ctacctctga
      121 caagttcatc aaggagagaa agggcgcgtg gcagcgtctg gaggatttgc tgacgctgct
      181 cgaccgctcc tccctgcgcc gcctgcaccg cgaggaggtg cgtgagttgg ggcgcatata
      241 ccgccgcacg gcctcggacc ttgcgattgc ccgcgccgag tcgcgcgacc cgcggctggt
      301 caactacctc aacagcctcg tcatacgcgc gcacggccgc atctaccgcg ccgactcgtc
      361 cgagggccga aaccgcctgc gccgcttctt cgcccgcgac ttcccccgcg tcttccgccg
      421 cacgtggcgc tacaccgcgc tctccttcgc cgtcttcatg gtcttcgcaa ccttcacctt
      481 cctcggcacg tggcgcgacc ccgagttctc ggcgctcgcc ggagtccccc cgtccgcacg
      541 ccagagggtt ttaaggcaga agccgcggtg gtgggagcgg atcaaccgcg ccaaccaggt
      601 cgagggcgcg gggattgcta ccaacaacat acaggtcacc ttcaacgcct tcgctttggg
      661 cgcgctcttc ggcctcggca cgctcgccgt gatggcctta aacggcgcga gcatcggcgc
      721 gtggctcgcg ctcacgcacc acgccggcta ctcgcacgag ctcctcacct tcatggccgg
      781 ccacggcgtc atagagctca cctgcatctt catcgccggg ggcgcggggc tcctgttcgg
      841 cacggccgtc ctcttccccg gcgacctatc gcgcctcgac aacctgcgcc tacgcggccg
      901 cgaggcgata cagctcatca tgggctgcgt accgctgctg gcagtcgcgg ccgccatcga
      961 gggcttcatc tcgcccgcgg ccataccgcc cgccatgaag ctggccgtcg ccgccgtcac
     1021 gggcgtcgcg ctctactcct acctactgct cgccggccgc gacgaagccg cggacgagcg
     1081 ggcctgactt tccggctcag agcatcccgc gctctttgac gcggatgtat gtctccagga
     1141 gtgaggggac gagcgcggcg gtcgtcacgt caagcgcgag gccgccctgc gcctcgacca
     1201 gtcggagcgc cgcctcgcgc tggtgcatta tctcttcggc gaccgactgc gcgaataggt
     1261 cttggaaggt cgcgggcgcg tcgcgcaccg ccgagcgcag gtcgcggtcg gctatcgtcg
     1321 tgacgagcgg caggtggcga ggccgcagta tgcggagcga ggtcagaagc tcgcgcgagc
     1381 cctcctcgtc cacgaggtct gtgaggacga cgacgaagga gcggcgcttg cagttggcgg
     1441 cgacgaactc gaaggcgcgc gtgtaggagg gctcgatcag ttcgggctcg acggcgtgca
     1501 gcgcttcgag cacggcgtcg gtctgctcgc ggccccgcgc cggggggacg taggacttga
     1561 cgcggcggcc gaagacgacc aggccggcgt ggtcgcccgc ccgcgcggcg gcgctcatca
     1621 gggcgagcgc ggcgtgtatg gccgagtcga acttcgtctc gttctcgacg cgcccggtca
     1681 tcagccgtcc cgcgtcgagc gctatcagca cggtctggtc gcgctctatc tgatactgcc
     1741 gcgtcgtcag cttccccctg cgggcggtag cgctccacga gacgtggcgc agctcgtcgc
     1801 ccggcacgta ctctcgcaga gactcgaagt cgcgcccctc gccgcgccac gccgcgcgcc
     1861 gctgcgccgc gacgagcgag cgggcgccga gcgccttcag ctccgcctcg cgcgcgcgcc
     1921 gcaggttcgg atagaccttc accgtctcgg gctcgcccgc gcgcgcctcg caccacacga
     1981 gcccgagccg cgagacgaag cgcacggcca cgcgcccgaa ctcgaagcgc ccgcgccgcg
     2041 gcggccggag cgcatattcc accgagccgg cctcctgcgg cccgagcctc agctccgcct
     2101 cgcggctcgc ggcgagcaca agctcgggcg ggtgctcgtc ctttatcttg agcctcaggg
     2161 cgcgccgcgt gtggttgacg acgcgcacgc gcacctccgt ctcggccccg atgtggaagc
     2221 gcccgccaag ctcgcgcgta atctcgacgc cctcgggcag ccggctcgtg cgcgcgtcaa
     2281 ctatcgcgac gacgagcagc gccaggtcgt aagcgaatga cgcccagcgc agccacggcc
     2341 gcccccacga gagcgagagc ggcacgaagc ccgcggcgag caggaggtag aagagtttgg
     2401 tgaagacgaa gcgcatgtgg atgttcgcgc ggcggccgga gggcctcaac cggccccccc
     2461 tgcgtgcgcg ttccagacgt gcgtggcgta gagcgtcggg acgtggtctt cgagggcgcc
     2521 ggggatcagg ttgaccaagt gcggcttgag cctccccgtc gcgtcgaagg gcagcgtcaa
     2581 cgcgccgcgc aggaaattgc ccacccgact cgccagcgac gggccgccgc cgatccggcc
     2641 gtcggcgccg atgtgcttga gcgcgccgcc gtgctcgtag atgccgggag gcggtagtgt
     2701 cgtcacaacg tccctgttgt tcacgaagcg gtggtgctcg atgccggact gcgaaaggcg
     2761 gcggtcgagg gctcgggcga aggcgccgtc gcccgcgcgc gggctgccga aagtgtagag
     2821 gccgtcgagg cgctcgcact tcgcggccgc gagcgtcgcg agcgccgccc cgaggctgtg
     2881 gcccgtcagc cagaccgtca cacgcgggcc gaggcccgac aggaactctc ccaggccgcc
     2941 gccccagacg ctgtccaccg ccctcttgaa cccgtgatgc acgcgcccgc ccaggtcgga
     3001 ctggacgggg agggcgtcga agtctgtcag caggtcggcg aagacctcgc cgaagtcttc
     3061 gcgggggcgt ttgcgcgggc tcgtctcagt ccccctgaag gcgacgacgg tgaagccttc
     3121 ggcgttgacc gcgaaacact gcgtactgcc ctggctgaag tcggccgtgc tgttaagccc
     3181 cgccttcgcg ccgagcaccc tgccgaactc cgcgaagtcc gagtaggcga gcgtagcgat
     3241 ctcgcagagc caccaggcgt tgaccatcct gaactctttc gagccgccgt cgaacgggtg
     3301 cgcgtcggcg ttctcgaagt atctgtaaac ggccccttcg gggtacggcg gccggaggtt
     3361 ggcgagggtt atcttcggcg gctctttttt cccgtcggcc atctgctttc acctcccggc
     3421 gagtgaggtc gcgctcagcg aggcacttcg acggtgttga gaatgtcggc gacgacgctg
     3481 tcgggcgtcg cgccgtcgag ctcggcctcg gcgcgcagag agaggcggtg gcgcagcgcg
     3541 ggccgcgcga tgtcgcgcac gtcgtcgggc gtggcgaagt cgcggccgcg catggccgag
     3601 agcgccttcg cgcacaggag gagcgcgacg gccgcgcgcg ggctcgcgcc gtaggcgacg
     3661 gacgggtgct cgcgcgtgcg gcgcacgagc tcgaccagat agcgctgcac gccgggctcc
     3721 atgcgggagc gccggacttc ggcgcggcac tgcacgacgg cgtcgggctc gggcagaggg
     3781 cgtatgtcaa tctgctccag ccggcgcgcg ctgaagccct cgtcccagtt gccgactatc
     3841 cgctcctcct cttcgcgcgt cgggtagccg atgatgattt taaggaggaa acggtcgagc
     3901 tgcgcctcgg gcagagggta tgtgccctcg tactcgatgg ggttctcggt ggcgaagacg
     3961 gtgaagacgg gcgagagctt gtgaacctcg ccgtcaatcg tcacctgccg ctcctccatc
     4021 gcctcgagga gcgccgcctg agtcttgggc ggcgtgcggt ttatctcgtc ggccaggagc
     4081 acgtccgtaa agacgggccc gcgccgcaaa gagaacgtgg ccgtcgaggg gttgaagacg
     4141 ttcgtccccg tgatgtcgga gggcattagg tcgggcgtga actgtatgcg gctgaagccg
     4201 gcgccgacga tgcgcgcgag cgtcttgacc agtagcgtct tggcggttcc cggcaccccc
     4261 tcgacgagcg cgtggccctc ggccagaagg gcgactagga cttgctcgac cacggcgtcc
     4321 tggccgacga cgactttgcg cagctccgtc tgtatgtgct cgactgttgt ggggacgtat
     4381 tgaagcattt cagatttttg atttcagatt ccgagcgaag accggcgagt atgaaagcac
     4441 agataatcgc aaatcaaaaa tcccgaatcg aaaattcctt atcgcgcctc ggcctgccga
     4501 atctcgcgcg agcgcatgag aatgccgagg tcgcgctcca gctccctcaa gccccgcgcg
     4561 agcgccagcg ccctccgcgg cgagaggggc tggccctgcg ccgcggcctc gcactcgcgc
     4621 agaagctctt cgatgggccg ggggtcgcgg cccgagcggg cggcgacgcg cgcggcgagc
     4681 tgttcgggcc gggcgtcggg cgccgccccg gcgtagcgcg ccagcgcgcg ccgcgtgcgc
     4741 gcgtagatgt tctcgacggc gaggtcgtat gcgcgggccc gctgttgcag ctcggccatc
     4801 gaggcgacga actcgagctt cgagcgccgg tcaacgcgcg gcgcggggag cggtcgcgcg
     4861 aagcgccggc cgcgcgtcca gaccacggcg aggacgatga cgccggcctg cgcgaacatc
     4921 cagaggatgg gcgtcccggc gaagtaagag aagagctcgt tgcgcgcgcc gccgtagccc
     4981 tggtggtact cgtcgaaggc gatggggccg ccgccggagg ttacgacgtt cgtggcgagg
     5041 atgagattgt ccgcgcggtt gatgccgccg ttcgagacga tgtaggggtc gctcaagacg
     5101 actacgcggc cgcgcccgta tgcgtagtca acgaggagcg cgccggggcc gtgccgcccg
     5161 tccagcaggt gcacgacggg cgcctgcggc tcgtagggcg ccgcggccgg cggcggctcg
     5221 gagcccggcc cggtgcgcgc ggccggcgcg ggcgggggcg gcggctcctc ctcgtcctcc
     5281 cagaaaactt catcgtcctc gccttcgtcc gggtacgtag gggcgggcga cgcgtcgggc
     5341 ttcggcgggg gcggctggcc gtaaccggac cccagcactt cggcctccgc tacttgcagg
     5401 cgcgcggcga agcgcgagcg cgtcacgt
//
LOCUS       DASPKR010000254         4435 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1197094, whole genome shotgun sequence.
ACCESSION   DASPKR010000254 DASPKR010000000
VERSION     DASPKR010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4435)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4435
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1197094"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            145..1935
                     /locus_tag="VD968_07020"
     CDS             145..1935
                     /locus_tag="VD968_07020"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYE14175.1"
                     /translation="MSAVAEDKKVVVGGSFLIEERAPGEVFTPEDFTEEHHMIADTAR
                     QFMDNEVRPRMDELEKTKDWSVARELVRQGAELGFVGATLPEEYGGLGMDQVTGAIIG
                     EYLGRSASFATTMGAQGGIGLLPIVYYGTEEAKRRYIPRIVTGELITAYALTEAGSGS
                     DALAAKATARLSEDGTHYVLKGEKMWITNGGFADVFVVFAKVDGDKFTGFIVERQEGL
                     QNGAEEHKMGIKASSTTALALDNVKTPVSNLLGEVGKGHKIAFNILNIGRFKLGAMCL
                     GGMKLMISEAVRYANERHQFGRPISSFGAIKAKLGEMAIRAWVGEAMVYRTLGLIEGA
                     INATADAADPESKLRAIEEYAAECSIIKVALSEYCDFVADEMVQIYGGYGYSADYPAE
                     RAYRDSRINRIFEGTNEINRMLIPGMLMKKAMKGQLALLPAAQALMDEVLSPSVPSLD
                     DDDEVLAAETRLARNAKKVALMVLGTAAQKYMQALSDEQEILIGAADIITDVYAMESA
                     ILRARKLAASEGEEAAAPYLDMTRVFCSGAAGRVEANARNTLAAMSEGDELRTLLAAL
                     KRFTKSTPVNAVAARRRIADAMIQANRYTY"
     gene            2060..3013
                     /locus_tag="VD968_07025"
     CDS             2060..3013
                     /locus_tag="VD968_07025"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE14176.1"
                     /translation="MKIVPISLPTPFYVGPVNVYLIKEEPLTLVDTGPKTREALEALK
                     EGLRRERLRVSDIRRIVLTHAHEDHCGLAKQLRDEAREAEVLVHGWETGHRAGRLEHE
                     EHRRLLVRAGVPDGEIREMRRMYEGVRAYADALEDHEHSELTDDGEIRFERGSLRVVH
                     TPGHTPGSCSFLREADRTVLAGDCVLKRITPNPIMSPDPVDPSRRFRSLAEYLVSLAR
                     LRSLHPTLVHGGHGEPVHDYEELFNRYLRAINERQAEVLRLIPKAGATAWDTSLELFP
                     DSTGVHRFLAVSEAVAHLDLAHSEGKLALELSGDREVYRKP"
     gene            3404..4384
                     /locus_tag="VD968_07030"
     CDS             3404..4384
                     /locus_tag="VD968_07030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14177.1"
                     /translation="MKFCIASVTSRFARARAAFGVLAAALALAAAASYGAAPAQAAET
                     VEIYADDCVTPRTEFYLGDTVCAIVRSAPAPYLGWRQRQFQWVTPNQRVTSQSDITSP
                     RGQKDLFTIPASGEYARAGKWSVRTIDNEPGTQIIANFTVRNPRLRLVDLLLYQQGPT
                     YILPGTKVKYSMTIANEGLDYTKGVEFVVEVPSGMGFYTLKQVSGGVFTCELPPRGYG
                     GRIYCSSDVMKAEEMASFDVYYIVDDFIKEGDVSYGSAHIWSPSEEESPDNNYWTVEA
                     AVVSRDTYETSGDPDEPYSEGGGDPYPKDSDPVPPTEPIGDQNPPGSDPL"
BASE COUNT          843 a         1473 c         1454 g          665 t
ORIGIN      
        1 ggcgcgaagc tgaccgcgac gattctgcgc gaactggagc gccggggcgg gcgctacggg
       61 atggtcacga tgtgcgtcgg cggcggcatg ggcgccgccg ggattttcga gagactttaa
      121 aaccgagacg gaaaggagca ccttatgtct gccgtggccg aagataaaaa ggtcgtagtg
      181 ggcgggagtt ttctcatcga ggagcgcgcg cccggggagg tcttcacccc cgaagacttc
      241 accgaggagc accacatgat agccgacacg gctcggcagt tcatggacaa cgaggtgcgc
      301 ccgcgcatgg acgagcttga gaagacgaag gactggtctg tggcgcgcga actcgtccgg
      361 cagggcgccg agctagggtt cgtcggcgcg acgctccccg aagagtacgg cgggctcggc
      421 atggatcagg tgacgggcgc aatcatcggc gagtacctgg gccgctcggc ctccttcgcc
      481 acgacgatgg gcgcgcaggg cggcatcggc ctcctgccaa tcgtctatta cggcaccgag
      541 gaggcgaagc gcaggtacat cccccgcatc gtcaccggcg agctgataac ggcctacgca
      601 ctgacggagg caggctccgg ctccgacgcc ctcgcagcca aagcgaccgc gcgcctgagt
      661 gaagacggca cgcactacgt gctcaagggc gagaagatgt ggatcacgaa cggcggcttc
      721 gccgacgtgt tcgtcgtctt cgcgaaagtt gacggcgaca agttcaccgg cttcatcgtg
      781 gagcggcagg agggcctaca gaacggcgcc gaggagcaca agatgggcat caaggcgtcc
      841 tcgaccacgg cgctcgcgct cgacaacgtg aagacgccgg tcagtaacct cctcggcgag
      901 gtcggcaagg gccacaagat agccttcaac atcctcaaca tcggccgctt caagctcggc
      961 gcgatgtgcc tcggcggcat gaagcttatg atctcggagg ccgtgcgcta cgccaacgag
     1021 cgacaccagt tcggccgccc catctccagt ttcggcgcca tcaaggcgaa gctcggcgag
     1081 atggcgatcc gcgcgtgggt gggcgaggcg atggtctatc gcacgctcgg cctcatcgag
     1141 ggcgccatca acgccacggc cgacgccgcc gaccccgagt cgaagctccg cgcgattgag
     1201 gagtacgccg ccgagtgctc gataataaag gtcgcgctct ccgagtactg cgacttcgtc
     1261 gccgacgaga tggtgcagat ttacggcggc tacggctact cggccgacta cccggccgag
     1321 cgcgcctacc gcgactcgcg catcaaccgc atattcgaag gcacgaacga gataaaccgg
     1381 atgctcatcc cggggatgct catgaagaag gcgatgaagg ggcagttggc cctgctgccc
     1441 gcggcgcagg ccctcatgga cgaggtgctc tcgccctctg tgccttctct ggacgacgac
     1501 gacgaagtgc tcgccgccga gacgagactt gcgcgcaacg ccaagaaggt cgcgctgatg
     1561 gtcctgggca cggcggcgca gaagtacatg caggcgctct ccgacgagca ggagattctc
     1621 ataggcgcgg ccgacatcat cacggacgtt tacgcgatgg agtcggccat actgcgcgcg
     1681 cgcaaactcg ccgcctcgga gggcgaggag gcggccgcgc cctacctcga catgacgcgc
     1741 gtcttctgct cgggcgccgc cgggcgcgtg gaggcgaacg cgcgcaacac gctcgcggcc
     1801 atgagcgagg gcgacgagct gcgcacgctc ctggccgcgc tcaagcgctt caccaagagc
     1861 acgccggtca acgccgtcgc cgcccgacgc cgcatagccg acgcgatgat acaggcgaac
     1921 cgctacacct actgagaggc cgtcagcggt cagcagtcag caatcagctt cccccttccc
     1981 gccggcggcg cgcgggggta aagttgagcg ccccttaacg ggctaaagct gaatgctgac
     2041 cgctgactgc tgaccgctta tgaaaatcgt ccccatctcg ctgccaacgc ctttctacgt
     2101 cgggccggtc aacgtctatc tcatcaagga ggagccgcta acgctcgttg acacggggcc
     2161 gaagacgaga gaggcgttgg aggctttgaa ggagggcttg aggcgcgagc gcctgcgcgt
     2221 ctcagacata cgccgcatag tgctcacgca cgcgcacgag gatcactgcg ggctggccaa
     2281 gcaactccgc gacgaggcga gggaggctga agtcttagtc cacggctggg agacgggcca
     2341 ccgcgccggc cggctcgagc acgaggagca ccggcggctg ctcgtgcgcg cgggggtgcc
     2401 ggacggggag atccgcgaga tgcggcgcat gtacgagggc gtgagggctt acgccgacgc
     2461 gctcgaagac cacgagcatt cggagttgac ggacgacggc gagatccgct tcgagcgcgg
     2521 gagccttcgc gtagtccaca cgcccggcca cacgcccggc tcctgctcct tcctgcgcga
     2581 ggccgaccga accgtcctgg ccggcgactg cgtgctcaag cgcatcaccc cgaaccccat
     2641 catgtcgccc gaccccgttg acccctcgcg ccgcttccgc tcgctcgccg agtatttggt
     2701 gagcctcgcg cgcctgcgct cgctccaccc cacactcgtc cacggcggcc acggcgagcc
     2761 cgtccatgac tacgaggagc ttttcaaccg ctacctgcgc gccataaacg agcggcaggc
     2821 ggaagtcctc cgcctcatcc ccaaagcggg cgccacggcc tgggacacct cgctagagct
     2881 cttccccgac tcgacgggag tccaccgctt cctcgccgtc tccgaggctg tcgcgcacct
     2941 cgacctggcc cactccgaag gcaagctcgc cctggaactc tccggcgacc gcgaggttta
     3001 caggaagccc tgagccgccc gccttcagaa ctctttcaga aaaaactcag aagggcctaa
     3061 agactcccga gcgcgcgggg ctgtatcctc cgcgctgtca tacgggcgca gacacacttc
     3121 ctacatacat acgtggtgac cgccttgatg ctccgggcgt atttatatcg cgtacttaaa
     3181 ctgggagggg aaacaggcgg gggcggcggg ccgggacaga gcgcggggag ggcggcgccg
     3241 agatttttct tgacgcgccg ggcgggcccg cttaggatgt agccccccaa caagcaggtc
     3301 tttaccaaac cttacttgcc ccgaagtacg ccccctactt cctcgcgcgc cgctttaccg
     3361 ttgtgaaatc aaccgggaag gttaactaca agaggagagt tatatgaagt tctgcatcgc
     3421 ctccgtgact tcgagattcg cccgcgcgcg cgccgcgttc ggcgtgctgg cggccgcgct
     3481 cgcgctcgcc gccgcggcct cctacggcgc ggcgccggcg caggccgccg agacagttga
     3541 gatttacgcc gacgactgcg tgacgccgcg cacagagttc tacctcggcg acacggtctg
     3601 cgccatcgtg cgcagcgcgc ccgctccgta cctgggctgg cggcagcggc agttccagtg
     3661 ggtcacgccc aaccagcgcg tgacgagcca gagcgacata acgagcccgc gcggccagaa
     3721 agacctgttc accatcccgg cgtcgggcga gtacgcgcgc gccggcaagt ggtcagtccg
     3781 aaccattgac aacgagccgg ggacgcagat catcgccaac ttcacggtgc gaaacccgcg
     3841 gctgcgcctc gttgacctcc tgctctacca gcagggcccg acatacatac tgccgggcac
     3901 gaaggtcaag tactctatga cgatagccaa cgaggggctc gattacacga agggcgtcga
     3961 gttcgtcgtg gaagtgcctt cgggcatggg cttctacacg ctcaagcagg tctcgggcgg
     4021 cgtgttcacg tgcgagctgc cgccgcgcgg ctacggcggc cgcatctact gcagctcgga
     4081 cgtgatgaag gccgaggaga tggccagctt cgacgtttac tacatcgttg acgacttcat
     4141 aaaggagggc gatgtcagct acggctccgc gcacatatgg agcccgtccg aggaggagtc
     4201 gccggacaac aactactgga cggtggaggc ggccgtcgtc tcgcgcgaca cgtacgagac
     4261 gagcggcgac cctgacgagc cctacagcga gggcggggga gacccgtacc cgaaggacag
     4321 cgaccccgtg ccgccgaccg agcccatagg cgaccagaac ccgccgggca gcgacccgct
     4381 ctgagcgggc ggcgagcgcc aattctgaaa aaccggaggg ccgggcggcc gacgc
//
LOCUS       DASPKR010000255         8639 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1326446, whole genome shotgun sequence.
ACCESSION   DASPKR010000255 DASPKR010000000
VERSION     DASPKR010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8639)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8639
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1326446"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1395)
                     /locus_tag="VD968_07035"
     CDS             complement(<1..1395)
                     /locus_tag="VD968_07035"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYE14178.1"
                     /translation="MNLADERLKAIGNPSLTDDERALLRCRVAADLTHGGQYEAACEA
                     LGELWGGVGMRPNVEGFRVSTAAEALLQVGALSGWVGASRQVKGAQEAAKDLISESIS
                     LFESAGDATHVAIARSDLALCYWREGAYDEARVLLTDAFKSLTETVERAKVLLRLNTV
                     EFSAGRYHEGLALLTEHAHIFDEQVSHVLRGGFHNHLALMLKQLGALEGRPDYLDRAI
                     IEYTAAIHHYGLARHDRYRANNENNLANLLSKMGHYRQAHEHLDRAGATLLRLGDAGL
                     LAQVDETRACVFLAEKKYAEADRVIRRAVQTLERGGAAALLADALTTQGVIRARMGND
                     EGSVAALRRAIDVAEEAGALSNAGLAALALIEEHGARRALSRTELYELYFRADRLLKD
                     TQHPETVARLRACARVVMRRLAGTHYGGKDFTFFDAVREFEARMIMQALEEAGGSVTK
                     AASLLGIRHQTLSAI"
     gene            1613..1738
                     /locus_tag="VD968_07040"
     CDS             1613..1738
                     /locus_tag="VD968_07040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14179.1"
                     /translation="MEEPTIEATGTNYAEDDAPDDVAGGLMETVRGLLAAVLALV"
     gene            complement(1932..2090)
                     /locus_tag="VD968_07045"
     CDS             complement(1932..2090)
                     /locus_tag="VD968_07045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14180.1"
                     /translation="MSSNPQSAIAMFSDSAASDPWAFAGFHAAVFLAVVVVLLAIQWL
                     FDRRRGGR"
     gene            complement(2120..4054)
                     /gene="asnB"
                     /locus_tag="VD968_07050"
     CDS             complement(2120..4054)
                     /gene="asnB"
                     /locus_tag="VD968_07050"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HYE14181.1"
                     /translation="MCGICGVWEYGAASGGVEIEHVERMRDVMRHRGPDDAGAGLFDG
                     GRLGLGHRRLSIVDLSAAGHNPMRGCEARDVWTVFNGEIYNHAELREGLERRGHAYRS
                     RTDTETILHLYEERGLDFVHDIEGDYGIALWDGRARRLVLIRDRMGVKPLYFFQQGGR
                     LVFASEIKAILAHPAVTADVDEEALYHYLSFLTTPPPLTLFRGIRKLPAGHMLTLGRD
                     GEARVSQYWDALPPADDRASALTDEEQRAEILKLLRASIKKRMMADVPFGVFLSGGVD
                     SSANVALMAEQMEQPVRTFTVGFRDHEELNELEPARSVARRFGTDHHEVLIGEREMRD
                     FLPGLVFHQDEPIADPVCVPLFYVSKLARETGTVVVQVGEGADEIFSGYDKYVKYLRI
                     QERFWRHAERVPAGARRAAAAVARPVMEKTFRKRMAIELVRRLGADESLFWGSAVVFD
                     ETFKPRVLSRDLRARLIGLSSYDVVREYQERIASERPASDFLARLTYLELKLRLPELL
                     LMRVDKITMAASVEARVPFLDHRLVEHALGVSRALKVEGRSGKHVLKRALEGVLPRDL
                     LYRPKRGFGAPIRGWLRGGEGARLLDERLLNSTMRRRGFLDYDFVARLADEHGRGARD
                     WSFHLWALLNLSLWYERWVR"
     gene            complement(4163..6364)
                     /locus_tag="VD968_07055"
     CDS             complement(4163..6364)
                     /locus_tag="VD968_07055"
                     /inference="COORDINATES: protein motif:HMM:NF028199.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HYE14182.1"
                     /translation="MSKGRHERARRSFLQHPSLSTLLPALRGDVTLRAAALEALRRAR
                     AAVGRRRERAFLTRATGDVGPARLRPESARLGPERRLAEFRERPAPRLLPGLEEAGGD
                     EFRRALHERFVDERLKIIEEAEAIVGPEELPGAGRWPLLGFGVLDFDRLDWRRDPVSG
                     ARWELEYHADLRLVRGDGGDVRVVWELNRLGHLVTLGRAYAATGDERFARKLLRQARY
                     WRVNNPVGFGPNWACAMEVALRAMNLLAALKLVRRSPSLDEGHFSELLAMFDEHGEHI
                     RRNLEFSHIATSNHYLSDVAGLFWLGTALPELEAARGWREWALRELLSEMGKQVLPDG
                     AHWEASTGYHRFVTELFLYSFMLARENGIHVEETHWLRLRSMLDYVRAYLRPDGRAPL
                     IGDTDGGRVLPVSRRTADEHAYLLAVGAVVFDEPRFAVHRRAPEEALWLLGAEGVRKY
                     DALAAKATASASEAPPAAGAPVEGPRAFRDAGTYVLGEGDLYLLFNASGAGMRGRGSH
                     GHNDALSVEVSAGGSCFLRDPGTFVYTGDLHERHLFRSTRYHSTVEVDGEEQNTTDER
                     APFRIGDEARPSLVRWEESPDHVLAVAGHTGYERLSGGPVSHTRSVLFDRRARLWRIE
                     DALEGRGRHTFRFFFHLAPGLEAEARADASVAVCDRITGARLNIVPLWRGCGAPSLEP
                     RRSSRDYGYAEASLAACWSVEAQAPLFARWALVPLRADETEERLEAEGRKQ"
     gene            complement(6357..7469)
                     /gene="wecB"
                     /locus_tag="VD968_07060"
     CDS             complement(6357..7469)
                     /gene="wecB"
                     /locus_tag="VD968_07060"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HYE14183.1"
                     /translation="MIKVINVVGARPNFMKVAPIVDAMRRRGREFAPLVVHTGQHYDE
                     RMSDAFFRDLGLPEPDVYLGVGSGSHAQQTAAVMQLFEPVVLKERPDWVLVVGDVNST
                     LACALVCAKLLVPVAHVEAGLRSRDRTMPEEINRLLTDQIADLLLTPSEDADRNLLAE
                     GVAPERIRFVGNVMIDSLFLQLERAQSSRVREELGVAGRDYAVLTLHRPSNVDDPATL
                     GRILSALARIGERLPVVFPVHPRTRKNLSEFGLLEGAERGGRLRLVEPLGYLDFLRLY
                     SGARLVLTDSGGIQEETTALGIPCLTLRENTERPVTVALGTNQVVGTDPERILSAALP
                     SLEGNPSASPPRVPPLWDGRTADRILDAIKERAKGE"
     gene            complement(7542..>8639)
                     /locus_tag="VD968_07065"
     CDS             complement(7542..>8639)
                     /locus_tag="VD968_07065"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HYE14184.1"
                     /translation="IDFDHLSSCDAIIICVPTPLRKTKEPDISYILAAAGEIQKRLRR
                     GQLVILESTTYPGTTDEVLLPMFEEAGMKLDEDFLLAFSPERVDPGNPQFKTDNIPKV
                     VGGCTDDSTEAAALLYGQIVREVHAVSSARVAEAAKLLENTFRAVNIGMANEMARLCY
                     HLGIDTWEVIRAAATKPFGFMAFYPGPGIGGHCIPLDPHYLSWKARQHGFDSRFIGLA
                     EEVNSRMPEHVVTLVTDGLNDERKSLNGSRVLVLGVAYKKDIDDVRESPALSIIDRLR
                     AKGADVRYHDPYVSELRFDDAHTDSGGEPLQSVPLTDEEMASADVTIIVTDHSGVDYR
                     KVCELSKLVVDTRNALSRDLRKTSCAKIIRL"
BASE COUNT         1381 a         2837 c         3005 g         1416 t
ORIGIN      
        1 gatggcggag agagtctgat gacggatgcc gagcaggctc gccgccttcg tcacgctccc
       61 gcccgcctcc tctaaagcct gcatgatcat cctggcctcg aactccctta ccgcgtcgaa
      121 gaaggtgaag tccttgccgc cgtagtgcgt ccccgccagc ctccgcatca cgacgcgggc
      181 gcacgcgcgc agcctcgcga ccgtttcggg gtgttgcgtg tctttcaaaa gcctgtcggc
      241 gcggaagtac agctcgtaca actccgtccg cgagagcgcg cggcgcgcgc cgtgctcctc
      301 tatcagcgcg agggcggcca ggccagcgtt agaaagggcg ccggcctcct cggccacgtc
      361 tatcgccctg cgcagcgcgg cgacggagcc ttcgtcgttc cccatcctcg cccggatgac
      421 tccctgagta gtcagcgcgt cggccaggag cgcggcggcc ccgccccgct cgagcgtctg
      481 taccgcccgc cttatgaccc tgtcggcttc cgcgtacttc ttttcggcga ggaagacgca
      541 ggcgcgagtc tcgtccacct gcgcgagcag ccccgcatct ccgagcctga gcagggtcgc
      601 gccggcgcgg tcgaggtgct catgcgcctg ccggtagtgg cccatcttgc tgagcaggtt
      661 ggcgaggttg ttctcgttgt tggcccggta gcggtcgtgg cgcgcgagcc cgtagtggtg
      721 tatggcggcc gtgtactcga tgatggccct gtcaagataa tccgggcgcc cctccagcgc
      781 ccccaactgc ttcagcatta aggctaggtg attgtggaag ccgcctctta agacgtgact
      841 tacctgttcg tcgaagatgt gcgcgtgctc agtcagcagc gccagccctt cgtggtatct
      901 gcccgccgag aactcgacgg tgtttaggcg caagaggact ttggcccgct cgaccgtctc
      961 ggtgagcgac ttaaaagcgt cggtaagcag cacccgcgcc tcgtcatatg cgccctcccg
     1021 ccagtagcac agagccaagt cgctgcgcgc gattgcgacg tgcgtagcat cgcccgccga
     1081 ctcgaagagg ctgatgcttt cgctgataag gtctttggcc gcctcctgcg cgcccttcac
     1141 ctgccggctc gcgcccaccc agcccgacag ggcgccgacc tgcaacagcg cctccgcggc
     1201 cgtgctgacg cgaaagcctt cgacgttcgg gcgcataccc acgccgcccc acagctcgcc
     1261 gagagcctcg cacgcggcct cgtactgccc cccgtgcgtg aggtctgcag ccacgcggca
     1321 gcgcagtagc gcgcgctcgt cgtcggtgag cgacgggtta cctattgcct tcagccgctc
     1381 gtctgctaaa ttcatgtgag gacacccttt cctttacgtt cgccattttt ctggcggaca
     1441 taaaaagacc gtcaccccgg cagtatgtga cggttgcggc ctagcgacaa actccataaa
     1501 ggaaaaagca atgcgaaaga ttctcggagc ctccgttctc gtgttggccc tttgctgccc
     1561 ggcgttagca ggcgacatcc cctgcccggc ccctttaccg tccggcatga cgatggagga
     1621 gccaacgatc gaggccaccg gcactaacta tgcggaagac gatgcgcctg acgacgtagc
     1681 aggcggcctc atggagactg ttcgcggcct gctcgcggcc gtgcttgctc tcgtctaacc
     1741 cgcgcggcag tctaaccgaa atcaggctgc cccggcgggg cggccccgtg taagtgtgcc
     1801 ttgtgtgagc cggatagcag aggaggcgac ggccacgcgc gggagattaa cgccgcaagg
     1861 tgcggaatgc aatagatttc ttcacgcttg caacgtggtt tacagaaagg gggcgggcgc
     1921 catgttcgac ttcagcgccc gcccctcctt ctgtcgaaga gccactgtat tgccagcagg
     1981 acgacgacga cggccaggaa gacggccgcg tggaagccgg cgaaggccca ggggtcggag
     2041 gctgcggagt cggaaaacat ggcgattgcg gattgcggat ttgaagacat catgcctcct
     2101 gtcaatccgc gatttgaaat catctgaccc agcgttcgta ccagaggctg aggttaagga
     2161 gcgcccagag gtggaagctc cagtcgcgcg cgccgcgccc gtgctcgtcg gcgaggcgcg
     2221 cgacgaagtc gtagtcgagg aagccgcgcc ggcgcatcgt cgagttgagc aggcgctcgt
     2281 cgagcaggcg ggcgccttcg ccgccgcgga gccagccgcg tatgggcgcg ccgaagccgc
     2341 gcttggggcg gtagagcagg tcgcgtggca gaaccccttc gagcgcgcgc ttgaggacgt
     2401 gcttgccgct gcggccctcg accttgagcg cgcgggagac gccgagcgcg tgctcgacca
     2461 ggcggtggtc gaggaagggg acgcgcgctt cgacgctcgc cgccattgtt atcttgtcca
     2521 cgcgcatgag cagcaactcg ggcaggcgca gttttaactc caggtaggtg aggcgcgcga
     2581 ggaagtcgga ggccgggcgc tcgctcgcta tgcgctcctg gtactcgcgc acgacgtcgt
     2641 aggaggatag ccctatcagg cgcgcgcgta ggtcgcgcga gagcacgcgc ggcttgaagg
     2701 tctcgtcaaa gacgacggcg ctgccccaga agagcgactc gtcggccccg agccgccgca
     2761 caagctcaat cgccatcctc ttgcggaacg tcttctccat gacgggccgg gcgacggcgg
     2821 ctgccgcgcg ccgcgccccg gcggggacgc gctcggcgtg gcgccagaag cgctcctgta
     2881 tgcggaggta cttaacgtac ttgtcgtagc cgctgaaaat ctcgtcggcg ccctcgccga
     2941 cctgtacgac gacggtgcct gtctcgcgcg cgagcttcga gacgtagaag agcgggacgc
     3001 agacggggtc ggcgatgggc tcgtcctggt ggaagacgag gccggggagg aagtcgcgca
     3061 tctcgcgctc gccaatcagg acttcgtgat gatccgtccc gaaacgacgc gcgacgctgc
     3121 gcgcgggctc caattcgttt aactcctcgt ggtcgcggaa gcccacggtg aaggtgcgca
     3181 cgggctgctc catctgctcg gccatgagcg cgacgttggc cgaggagtca acgccgcccg
     3241 agaggaagac gccgaagggc acgtctgcca tcatcctctt ctttatcgaa gcgcgcagca
     3301 gtttaagaat ttcggcgcgc tgctcttcgt ccgtgagcgc cgaggcccgg tcgtcggccg
     3361 gcgggagcgc gtcccagtat tgagagacgc gcgcctcgcc gtcgcggccg agcgtgagca
     3421 tgtggccggc cggcagtttt cttatgccgc ggaagagcgt gagcgggggg ggcgtggtga
     3481 ggaaagagag gtagtggtag agcgcctcct cgtccacgtc cgcggtgacg gcggggtgcg
     3541 cgagtatcgc ctttatctcg gaggcgaaga cgaggcggcc gccctgctgg aagaagtaaa
     3601 gcggcttgac gcccatgcgg tcgcggatga ggacgagccg tcgggcgcga ccgtcccaga
     3661 gcgcaatccc gtagtcgccc tctatgtcgt ggacgaaatc caggccgcgc tcctcgtaga
     3721 gatgtaggat ggtctccgtg tccgtgcggg agcggtaggc gtggccgcgc cgctccaatc
     3781 cttcacgaag ctcggcgtgg ttgtaaatct cgccgttgaa gacagtccag acgtcgcgcg
     3841 cttcgcaccc gcgcatgggg ttgtggccgg ccgcggagag gtcaacgatt gagaggcgcc
     3901 tgtgcccgag gccgaggcgc ccgccgtcga agaggccggc gccggcgtcg tccggcccgc
     3961 ggtgccgcat cacgtcgcgc atgcgttcga cgtgctcaat ctcgacgccg cccgacgccg
     4021 caccgtactc ccacactccg cagattccgc acataagaac cgaaggcagt aagcagaagg
     4081 cggaaggcag taagaagact tatcaagtga gcagtcgggc gaaggcgtca gcctgagcgg
     4141 ggcaatgccg gctgccttct gcttactgct ttctgccttc tgcttcgagt ctctcctccg
     4201 tctcgtcggc gcgcaaggga actagcgccc agcgcgcgaa gaggggcgct tgcgcctcga
     4261 ccgaccagca ggcggcgagc gaggcttcgg cgtagccgta gtcgcgagag ctgcggcgcg
     4321 gctcgagcga gggcgcgccg cagccccgcc agagcgggac gatgttgagc cgcgcgccgg
     4381 tgattctatc gcagaccgcg acggaggcgt cagcgcgggc ctcggcttcg aggccgggcg
     4441 cgaggtggaa gaagaagcgg aacgtgtggc ggccgcggcc ttcgagcgcg tcctcgattc
     4501 tccagaggcg cgcgcggcgg tcgaagagga cggagcgcgt gtgactgacg gggccgccgc
     4561 ttaggcgctc gtagcccgtg tgcccggcga cggcgagcac atggtcaggg ctctcctccc
     4621 acctgacgag gctcgggcgg gcctcgtcgc cgatgcggaa gggggcgcgc tcgtccgtcg
     4681 tgttctgctc ctcgccgtca acctcgacgg tcgagtggta gcgggtagag cggaagaggt
     4741 gacgctcatg caggtcgccc gtgtaaacga aggtgccggg gtcgcgcagg aagcacgagc
     4801 cgcccgcgga gacttcgacg ctcagcgcgt cgttgtggcc gtgcgagccg cgcccacgca
     4861 tcccggcgcc gctcgcgtta aagagcaggt agaggtcgcc ctcgccgagc acataagtcc
     4921 ccgcgtctcg aaaggcgcgc ggcccctcga cgggcgcgcc ggcggcgggg ggggcttccg
     4981 acgcggacgc cgtcgccttc gccgcgagcg cgtcgtactt gcgcaccccc tcggcgccga
     5041 gcagccagag ggcttcttcg ggcgcgcgcc ggtggactgc gaagcgcggc tcgtcgaaga
     5101 cgacggcgcc gacggccagg aggtaagcgt gctcgtcggc cgtgcggcgg ctcaccggca
     5161 gcacgcgccc gccgtccgtg tcgcctatga gcggcgcgcg cccgtcgggc cgcaggtaag
     5221 cgcgcacgta gtcgagcatc gagcgcagcc gcagccagtg cgtctcttct acgtggatgc
     5281 cgttctcgcg cgcgagcatg aacgagtaga ggaaaagctc cgtgacgaag cggtggtagc
     5341 cggtagatgc ctcccagtgg gcgccgtcgg ggagaacctg cttccccatc tccgaaagca
     5401 actctcggag cgcccactcg cgccacccgc gcgccgcctc gagctcgggc agcgccgtgc
     5461 cgagccagaa gaggcccgcc acgtcggaga ggtagtggtt gctcgtcgct atgtgcgaga
     5521 actcgaggtt gcggcgtatg tgctcgccgt gctcgtcgaa catggcgagc aactcggaga
     5581 agtgcccttc gtcgagcgac ggcgagcggc gcactagctt gagggcggcg agcaggttca
     5641 tcgcgcgcag cgccacctcc atcgcgcacg cccagttcgg cccgaagcct acggggttgt
     5701 taacgcgcca gtagcgcgcc tgcctgagga gtttacgcgc gaacctctcg tctcccgtcg
     5761 cggcgtaggc gcggccgagc gtgacgaggt ggccgaggcg gttcaactcc cagacgacgc
     5821 gcacgtcgcc gccgtcgccg cgcacgagcc ggaggtctgc gtggtactcc agctcccagc
     5881 gcgcgcccga gacggggtcg cgccgccagt cgagccggtc gaagtcgagc accccgaagc
     5941 ccaaaagcgg ccagcgcccc gcccccggca actcttcggg gccgacaatg gcttcggcct
     6001 cctcgattat ctttaacctt tcgtcgacga acctctcgtg cagagcgcgg cggaactcat
     6061 cgcccccggc ctcttcgaga ccggggagga gtcgcggcgc cgggcgctcc cggaattccg
     6121 cgaggcgcct ctcggggccg agccttgcag actccggccg cagacgcgcc ggcccgacat
     6181 cgcccgtcgc tctcgtcagg aacgcgcgct cgcgcctgcg ccccacggcg gcgcgggcgc
     6241 gccttagagc ttcgagcgcg gccgcgcgaa gcgtaacgtc gccgcgcagc gcgggcagga
     6301 gcgtggacag gctcgggtgc tgtaagaagc ttcggcgcgc gcgttcgtgc ctgcccttac
     6361 tcacccttcg ccctttcctt tatcgcgtcg agtatgcggt cggccgtgcg gccgtcccag
     6421 agcgggggga cgcgcggggg cgaggccgaa gggttgccct caagcgacgg gagcgcggcc
     6481 gagaggatgc gctcggggtc tgtgccgacg acctggttag tgccgagcgc cacggtgacg
     6541 gggcgctccg tgttctcgcg gagcgtgagg caggggatgc ctagcgcggt cgtctcctcc
     6601 tgtatgccgc cggagtccgt cagcaccagg cgcgcgccgc tgtagagccg caggaagtcg
     6661 aggtagccga gcggctcgac gaggcgcagg cgcccgcccc gctctgcgcc ttcgagcagc
     6721 ccgaactccg agaggttctt gcgcgtgcgc gggtggacgg ggaagactac gggcagccgc
     6781 tcgcctatgc gcgcgagcgc cgagagtatg cggccgagcg tcgcggggtc gtcaacgttc
     6841 gacggcctgt gcagcgtgag caccgcgtaa tctctgccgg cgacgcccaa ctcctcgcgc
     6901 acgcgcgaag actgcgccct ctctaactgc aggaagagcg agtcaatcat cacgttgccg
     6961 acgaagcgta tgcgctcggg cgcgacgcct tcggccagca ggtttcggtc ggcgtcctcc
     7021 gaaggggtga gcagcaggtc tgctatctgg tcggtgagca ggcggtttat ctcttcgggc
     7081 atcgtgcggt cgcggctgcg cagccccgcc tcgacgtgcg ccacggggac gagcagcttc
     7141 gcgcagacga gcgcgcaggc gagcgtggag ttcacgtcgc ctacgacgag aacccagtcg
     7201 ggcctctcct tcagcacgac cggctcaaag agctgcatca cggcggcggt ctgctgcgcg
     7261 tggctcccgc tccctacgcc cagataaacg tcgggctctg gcagcccgag gtcgcggaag
     7321 aaggcgtccg acatcctctc gtcgtagtgc tgccccgtgt gcacgactag cggcgcgaac
     7381 tcgcgcccgc gccgcctcat cgcgtccaca atcggcgcga ccttcatgaa gttcggccgc
     7441 gcccccacga cgttgatgac tttaatcatt agcgatcagc aatcagccgt cagccgtcag
     7501 ccggaagaaa gccagggcgc tgatagccga ccgctgacgg cttacagacg aatgatcttc
     7561 gcacagctcg tcttgcgcag gtcgcgggag agggcgttgc gggtgtcaac gacgagcttg
     7621 gagagctcgc agacctttcg gtagtcaacg cccgagtgat ccgtgacgat gatggtcacg
     7681 tccgccgagg ccatctcttc gtccgtgagc gggacggact gcaagggctc gccgcccgag
     7741 tcggtgtgcg cgtcgtcgaa gcgaagctcc gagacgtagg ggtcgtggta gcgcacgtcg
     7801 gcgcccttcg cgcgcaggcg gtcaatgatg gagagcgcgg ggctctcgcg cacgtcgtct
     7861 atgtccttct tgtatgcgac gccgagcacg agcacgcgcg agccgttgag gctcttgcgc
     7921 tcgtcgttga gcccgtcggt gacgagcgtg acgacgtgct cgggcatgcg cgagttgacc
     7981 tcctcggcca gcccgatgaa gcgcgagtcg aagccgtgct ggcgcgcctt ccaggagagg
     8041 tagtgcgggt cgagcgggat gcagtggccg ccgatgccgg ggccggggta gaaggccatg
     8101 aagccgaacg gcttcgtcgc cgccgcgcgt ataacctccc aggtgtcaat gccgaggtgg
     8161 tagcacagcc gcgccatctc gttcgccatg ccgatgttca ccgcccggaa ggtgttctca
     8221 aggagcttcg ccgcctcggc gacgcgcgcc gaggagacgg cgtgaacctc gcgcactatc
     8281 tggccgtaga gcagcgccgc ggcctcggtc gagtcgtccg tgcagccgcc gacgactttg
     8341 gggatgttgt cggtcttgaa ttgcgggttg ccggggtcaa cgcgctcggg cgagaaggcg
     8401 agcaggaagt cctcgtccag cttcatgccg gcctcctcga acatggggag cagcacctcg
     8461 tcggtggtgc cggggtaggt ggtcgattcg agtatgacga gctgcccccg gcggagccgc
     8521 ttctgaatct ccccggccgc ggccagtatg taggagatgt ccggctcctt cgtcttgcgc
     8581 aagggggtcg ggacgcagat gatgatggcg tcgcacgagg agaggtggtc gaagtctat
//
LOCUS       DASPKR010000256         2918 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1067368, whole genome shotgun sequence.
ACCESSION   DASPKR010000256 DASPKR010000000
VERSION     DASPKR010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2918)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2918
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1067368"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..473)
                     /locus_tag="VD968_07070"
     CDS             complement(<1..473)
                     /locus_tag="VD968_07070"
                     /inference="COORDINATES: protein motif:HMM:NF015142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004721 - phosphoprotein phosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HYE14185.1"
                     /translation="MSFSRNPLRPLFASIAAVLFISAASLAQTAEQAPPQDFSQVKIK
                     NFGQMDARFFRGAQPKEKDYKALADLGIKTVIDLQAEPKEYERRIVESLGMRYVNIPM
                     IEKTYPKAEHVAEFLKIVDDPETGKFFVHCAGGRHRTGSMGAVYRYEKYGWDFEQV"
     gene            819..2255
                     /locus_tag="VD968_07075"
     CDS             819..2255
                     /locus_tag="VD968_07075"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE14186.1"
                     /translation="MVKALNSGARSHGAAEFSRGADTAAKGRGDHFVQFYESEGYLLD
                     SLSDFVGEGLGAGEACVVVAGPERRAGLELRLRGRGLDVSADAARGRYVALDSAETLS
                     KFMVGCSPEPARFAGLLGPLIERAGSGSRGVRVFGDMVAHLCAEGGYAAAVRLEELWN
                     ELCDAHAFSLLCAYPIKGFGGESLAVPLAEVCSRHARVVPSESYAALACSDEQAREVV
                     RLQQKAESLQEQLEERERLLASERRLRAEAEEASRLKDEFLATVSHELRTPLTAIVGW
                     SHMLLRGGLEGEAAARAAETIERNAHAQAQLVEDLLDVSRIIEGKLSLSVAPVDLAAV
                     INAAVDSVRLAAEAKGLALSVTLDPRARLVAGDEARLRQVVWNLLSNSIKFTPDGGRV
                     EVSLRRAGRRAEIRVADTGCGISPDFLPYVFDRFRQGDQSTTRRHGGLGLGLAIVRHL
                     VELHGGTVTADSDGPGRGCTFTILLPSQ"
     gene            2620..>2918
                     /locus_tag="VD968_07080"
     CDS             2620..>2918
                     /locus_tag="VD968_07080"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE14187.1"
                     /translation="MIGETISHYRILDRLGEGGMGVVYIAEDILLGRRVAIKTLNVDA
                     GKQHYRQRFLREARAVSALNHPNIAVVHDYGETSEGQPFIVMELVQGESLEALLK"
BASE COUNT          515 a          930 c          932 g          541 t
ORIGIN      
        1 acctgctcga agtcccagcc gtacttctcg tagcgataga cggcgcccat cgagcccgtg
       61 cggtgccggc cgcccgcgca gtggacgaag aacttgccgg tctccgggtc gtcaacgatt
      121 ttaaggaact cggcgacgtg ctcggccttc gggtaggtct tctcgatcat ggggatgttg
      181 acgtagcgca tgccgagcga ctcgacgatg cggcgctcgt actccttcgg ctcggcctga
      241 aggtctatga cggtcttgat gccgaggtcg gccagggcct tgtagtcttt ctccttcggc
      301 tgcgcgccgc ggaagaagcg ggcgtccatc tgcccgaagt tcttaatctt gacctgcgag
      361 aagtcctggg gcggggcctg ttctgctgtc tgtgcgagcg atgcggcgga gatgaaaagg
      421 acggctgcga tagaggcgaa aaggggacgc aaggggttac ggctaaaact catcactaac
      481 cctccgtgag tcggaaaacg aacttaccgg gtgtcgtttt atgtttgcgt tagggggctt
      541 agaagcctgg gcgcggccgc cgcgccggta cggttgatga ttctgcacca acgcgcgggg
      601 ccgagtcaat ccttcggccg tggcgtttga ttctcgcgcg cgggccgaag ttgcagccgt
      661 ccccttccga agttgacagc acgcgcgcgt cactccgaaa agttctggat ttcagacggc
      721 cgaggcgcta gaatgcgcca gttccccttt caacatcgcg cgagccccct cgcaggcggt
      781 gcgcctcggc gacggcttcc cctttcgtgg agaaagtttt ggtcaaagca ctaaacagcg
      841 gcgcgcgatc tcacggcgcg gcggaattct ctcggggggc tgacacggcc gcgaagggtc
      901 gcggcgacca cttcgtacag ttctatgagt cggaaggcta cctgctcgac tcgctcagcg
      961 acttcgtcgg cgagggcctg ggcgccggcg aagcctgcgt ggtggtcgcg gggccggagc
     1021 gtcgcgcggg gctcgagctc cgcctgcgcg ggcgcggcct ggacgtttcg gcggacgccg
     1081 cgcgcggccg ctacgtcgcg ctcgactccg ccgagaccct ctcgaagttc atggtgggct
     1141 gctcgcccga gcccgcccga ttcgccggcc tgctcggccc gctcatcgag cgcgcgggga
     1201 gcggctcgcg cggcgtccgc gtgttcggcg acatggtggc gcacctctgc gccgaaggcg
     1261 gctacgccgc ggccgtgcgg ctcgaagagc tctggaacga gctgtgcgat gcgcacgcct
     1321 tctcgctctt gtgcgcctac ccgattaagg gcttcggcgg cgagtcgctc gccgtgccgc
     1381 tcgccgaggt ctgctcgcgc cacgcgcgcg tcgtcccctc ggagagttac gccgcgctgg
     1441 cgtgctcgga cgagcaggcg cgcgaggttg tgaggctcca gcagaaggcg gagtctttac
     1501 aggagcagct cgaagagcgc gagcgactgc ttgcgagcga gcgccgcctg cgcgccgagg
     1561 cagaggaggc gagccgcctc aaggacgagt tcctagccac cgtctcgcac gagctccgca
     1621 cgccccttac ggccatagtc ggctggtcgc acatgctgct gcgcggcggg cttgagggcg
     1681 aggcggccgc gcgcgccgcc gagaccatcg agcgcaacgc gcatgcgcag gcgcagctcg
     1741 tcgaagacct ccttgacgtt tcgcgtatca tcgagggcaa gctgagcctg agcgtcgcgc
     1801 ccgttgacct cgcggccgtc ataaacgccg ccgttgactc cgtgcggctc gccgcagagg
     1861 cgaaggggct cgcgctctcc gtcacgctcg accctcgcgc gcgcctggtc gctggcgacg
     1921 aggcgcgcct tcgacaggtc gtctggaacc tcctgtcgaa ctcgataaag ttcacgcccg
     1981 acggcggccg cgtcgaggtc agcctccgcc gcgcggggcg ccgcgccgag attcgcgtcg
     2041 ccgacaccgg ctgcggcata agccccgact tcctccccta cgtcttcgac cgcttccgcc
     2101 agggcgacca gtcaacaact cgccgccacg gcggcctcgg cctcggccta gcaatcgtca
     2161 ggcatctagt cgagctccac ggcggcaccg tcaccgccga cagcgacggc cccggccgcg
     2221 gctgcacctt cacaatcctt ctcccgtcac agtaaaagtc aacgaagcct atccgccgac
     2281 aaagaagccc tcccctaaag gaaggcttcg cagctcacgt agttccgggt gttcacgaat
     2341 aataaagtcc ttccctgaag agggcataag tcctttattt ttgactaccc acaatcgcta
     2401 gtttggaaat aaagttcttc cctaaagcct gatataggtt taaggcggag agctgagcga
     2461 acaataaagt tcttccccaa cgtgtatttt gcgttgaaat atcagtactc attagagcag
     2521 aatagccgcc gataaaagtt gccgaatgcc tgggtagagt cccgaaccca gccggacatc
     2581 tctcagcttc acgacctaaa gcgccaaagg gggtggtcta tgatcggtga gaccatttct
     2641 cactaccgca ttctcgacag gctcggcgag ggcgggatgg gggtagtgta tatcgcagag
     2701 gatatcctcc tcggccgccg ggtcgccatc aaaacattaa acgttgatgc cgggaagcag
     2761 cactatcgcc aacggttctt gcgtgaggcg cgtgcagtct ccgcactcaa tcatcccaac
     2821 atcgcggtcg tacatgatta cggcgaaaca tctgagggac agccattcat cgtgatggaa
     2881 ttagttcagg gagaatcgct tgaggctctg ttgaagag
//
LOCUS       DASPKR010000257         6602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_938798, whole genome shotgun sequence.
ACCESSION   DASPKR010000257 DASPKR010000000
VERSION     DASPKR010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6602)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6602
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_938798"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..702)
                     /locus_tag="VD968_07085"
     CDS             complement(<1..702)
                     /locus_tag="VD968_07085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14188.1"
                     /translation="MRTDAPKKTPRPFTRALALACLSALAAAPAASTAFVTAGRGANA
                     AVRIRDIQGASHVSPLNGRAVAGVTGVVTFKRPGGFFMQDARPDADERTSEGLFVSAR
                     SPAPVSVGDSVEVEGTVKELRPGRSAPDNPNLSVTQIEATSVRVVSSGNALPAPVVVG
                     AGGRVPPRQVIEDDAGGDAEVSGLFDPGADGLDFYESLEGMLVRVNSAVAVGPSITRR
                     DSKDVVVIGDGGAGAG"
     gene            complement(734..2353)
                     /locus_tag="VD968_07090"
     CDS             complement(734..2353)
                     /locus_tag="VD968_07090"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009166 - nucleotide catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HYE14189.1"
                     /translation="MAISLAACLVAGPVGGGAPARAHITILSTTDLHGNILPVDYYTN
                     RPDERGLAKVATLIRQARKENPNLLLLDSGDTIQGTPLAYYHNRKNNGPPDPMMLVMS
                     ELGFDAMAVGNHEYNFGPKVLEKARGEARFPWLSANTYEKGGERTHFDPYFVKEVGGV
                     RVGVIGLTTPGVPNWENPQNYAGLEFRDPVPEAKKWAAVLREKERADLVVVAMHSGLE
                     EDLRTGETNPSQVTNENSAVRIAEEVPGVDVILMGHTHREVPALFINGVLLAQANAWG
                     RHVARVDVYMEKSGDGRWRVAAKSSRTIPVTDKVAVDPDVARLVAPYDRETQGWLGKE
                     IGVSPADLSAEDARFRDSALLDLIHRVQLDAGRADVSMAAVFNPQARIRRGPVTVRDI
                     AGLYVYENTLVVLDVTGRQLKEALEHSAKYFRAYVPGAAPADLVDEKIPGYNFDIAEG
                     VSYELDLTKPPGERVQNLRFKGKPLSDTQRLRLATNNYRVNGGGGYTMYAGAPVVYRS
                     GEEIRELIIDWVERSGRIPAEPTGNWRIITR"
     gene            complement(2410..4890)
                     /locus_tag="VD968_07095"
     CDS             complement(2410..4890)
                     /locus_tag="VD968_07095"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033922 - peptidoglycan
                     beta-N-acetylmuramidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exo-beta-N-acetylmuramidase NamZ
                     domain-containing protein"
                     /protein_id="HYE14190.1"
                     /translation="MRTRTGSCVALLLTLAFAGQALAAGLPAAVPAKVGMSAKHLAFI
                     DAAVNEAVERKELPGAVVLVARRGGVVWRKAYGARSLVPEREAMTVDTVFDAASLTKV
                     VATATSMMILVERGELRLSDPVSRFIPELKGEGREKITIEHLLTHRSGYAPDFDLREQ
                     WQGYDEMLKRLYAEPLRSAPGARFVYSDIGMIALGEVVRRVSGQPLDEFARRNIFVPL
                     GMLDTGFRPGARLLPRVAPTESVRGMRSYLGGTGAQGAEGERMLRGEVHDPTANRMGG
                     VAGHAGLFTTADDLAVFCQMILRGGEYGGARILSPLSVAEMTRPRQVTEDGGARGLGF
                     DINTSFSTNRGDLYPVGSFGHTGFTGTSVWIDPASESFVVFLSNRVHPDGRGDVGPLR
                     ARVANIAAGAITDVGVAAAAQVEQTKYTENMLAGLVRFTVSTAEARADEAGGLLAPTD
                     AEVLSGIDVLDRDGFKQLAGMRVGLITNHTGRDRRGRQTIDVLREAPNVKLAALFSPE
                     HGIRGQSDEKVSDAVDEKTGLPIYSLYGETRRPKPEQLKDLDALVFDIQDIGTRFYTY
                     ISTLGYAMEEAAKAGKPVFVLDRPNPIGGAEVEGPLADPDKLSFVVYHTIPVRHGMTV
                     GELARLFNVQRGINCDLRVIVMENWRRGMFLDATGQTWVNPSPNMRSLTEATLYPGVG
                     LLETTNVSVGRGTDTPFELVGAPWIDGRRLAAYLNSRGLAGVRFVPVRFTPRSSVFKG
                     EECGGVNVIITDRARFRPVRAGIEMAVALRRLYPSEWKVGDYLRLLANADTLERVRRA
                     DDPEEIERSWQPSLAEFRRARARALLYR"
     gene            complement(4887..>6602)
                     /locus_tag="VD968_07100"
     CDS             complement(4887..>6602)
                     /locus_tag="VD968_07100"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HYE14191.1"
                     /translation="QLISVGINARFLNQESDDYKALRRQVEENHVGGIILFRGPVYES
                     VHLVNRMQRHARLPLLISADLEAGSGMRFEDTVNLPWNMAVGATGDPELARRQGALTA
                     REARSLGVHQIFAPVVDVNNNAANPVINVRSYGEDPQEVARFAAAFTEGAQGAGVIAT
                     AKHFPGHGDTSVDSHRGLPIINVKRERLDQIELVPFRAAVKAGVGAVMSAHIGLPEID
                     PTQVKPLPREEAVRPAYVDEGGEIVSESAYLPGTLSPTVLTGLLRQGLGFDGIIVTDA
                     MDMSGLTIYFKQDEAAVRAVLAGADMILKPADPDAAVRGLREAVRAGRLTEKRIEESA
                     RKILAAKYDLGLAKQRVAPLEAIDTAVAGPEATALADDVARRAITLVRDDARLVSREG
                     GAGVRTGASIFNLAVTNGEDRNWIANPFAGQLARLGRRADTVVLDSRATEEEVKGALE
                     RALKADVVIASMYGRVRSGAANSTSIPEQFSRVLGALLERKVPVVGISFGNPYLLQSF
                     PGLRTYLVAYGDMPSLQRAAARAVLGQADITGRLPITLPGLHPRGTGVQVKAAAVPAV
                     AVTGR"
BASE COUNT          962 a         2254 c         2299 g         1087 t
ORIGIN      
        1 acccgccccc gcgccgccgt cgccgatcac gactacgtcc ttggagtcgc gccgcgtgat
       61 cgaggggccg acggccacgg cgctgttgac gcgcacgagc atcccttcga ggctctcgta
      121 aaagtcgagc ccgtcggcgc cggggtcgaa taggccagag acctcggcgt cgccgcccgc
      181 gtcatcctct ataacctgcc tcggaggcac gcgcccgccg gctcccacga cgaccggcgc
      241 gggcagggca ttgccggagg agacgaccct taccgatgtc gcctcgattt gggtgacgga
      301 gaggttaggg ttgtccggcg cgctcctgcc gggcctgagc tccttgaccg tgccttcgac
      361 ctcgacagag tcgcccacgc tgacgggcgc gggcgaccgt gcgctgacga atagcccttc
      421 ggaagttctc tcgtcagcgt cgggccgcgc gtcctgcatg aagaagccgc cgggccgctt
      481 gaaggtgacg acgcccgtga cgcccgcgac cgccctgccg ttgaggggcg agacgtggga
      541 agcgccctgt atgtcgcgga tccgcacggc ggcgttcgcg ccgcggcccg ccgtcacgaa
      601 ggccgttgag gcggcgggcg ccgccgccag cgccgagagg caggcgagcg ccagcgcacg
      661 tgtgaagggc cgcggcgttt ttttgggggc gtctgttctc atctcgaagg tgcgggcggg
      721 gcgagcctga ggctcacctc gtgatgatgc gccagttgcc ggtcggctcg gcggggatgc
      781 gcccgctgcg ctccacccag tcaatgatta actcgcgtat ctcctcgccg gagcgataga
      841 cgacgggcgc gcccgcgtac atcgtgtagc cgccgccgcc gttcacgcgg tagttgttcg
      901 tcgccagcct aagcctctga gtgtcgctca ggggcttacc cttgaagcgc aggttctgca
      961 cgcgctcgcc cggcggcttc gtcaggtcga gctcgtagct gacgccctcg gcgatgtcga
     1021 agttgtagcc gggaatcttc tcgtcaacca ggtcggcggg ggccgcgccc ggaacgtagg
     1081 cgcggaagta cttcgcggag tgctccagcg cctccttcaa ctgccgcccc gtcacatcga
     1141 ggacgacgag cgtgttctcg taaacgtaga gccccgctat gtcgcgcacg gtgactgggc
     1201 cccggcggat gcgggcctgc gggttgaaga cggcggccat cgagacgtcg gcccgccccg
     1261 cgtccaactg cacgcggtgg atcaggtcga gcaaggcgct gtcgcggaag cgcgcgtcct
     1321 ccgcgctcag gtcggcgggc gaaacgccta tctccttgcc gagccagccc tgcgtctcgc
     1381 ggtcgtaggg ggcgacgagc ctcgccacgt ccgggtcaac ggcgaccttg tccgtgacgg
     1441 ggatggtgcg cgaggacttg gcggcgacgc gccagcgccc gtcccccgac ttttccatgt
     1501 acacgtcaac gcgcgcgacg tggcgccccc aggcgttagc ctgcgcgagc agcaccccgt
     1561 tgatgaagag ggccggcacc tccctgtggg tgtgccccat aaggatgacg tcaacgcccg
     1621 gcacttcttc ggcgatgcgg acggcggagt tctcgttcgt gacctgcgac gggttagtct
     1681 cgcccgtgcg caaatcctct tcgagcccgc tgtgcatggc gactaccacg aggtcagcgc
     1741 gctccttctc ccgcagcacg gccgcccact ttttcgcctc cggcacgggg tcgcggaact
     1801 ccagccccgc gtagttctgc gggttctccc agttgggcac gccgggcgtc gtgaggccga
     1861 tgacgccgac gcgcacgccg ccgacctcct tgacgaagta ggggtcgaag tgcgtgcgct
     1921 ctccgccctt ctcgtaagtg tttgcggaga gccacgggaa gcgcgcctcg ccgcgcgcct
     1981 tctccagcac cttcggcccg aagttgtact cgtgattgcc gacggccatg gcgtcgaagc
     2041 ccagctcgct catcacgagc atcatcgggt cgggcggccc gttgttcttg cggttgtgat
     2101 agtaggccag cggcgtaccc tgaatcgtgt cgccggagtc gagcagaagg aggttcgggt
     2161 tctccttccg ggcctgccgg atgagggtcg ccaccttcgc gaggccgcgc tcgtcggggc
     2221 ggttcgtgta gtaatcaacg gggagaatgt tcccgtgcag gtcggtcgtg gagaggatgg
     2281 tgatgtgagc acgcgccggg gcgccgccgc ccaccggccc cgccacaagg caggcggcaa
     2341 gtgagatcgc caccgccagc cacggcagta aaataacgcg gagccgtccc ccggtcttca
     2401 tcaaccctcc taacggtaca gcaaggcgcg cgcgcgggcg cggcggaact cggccaggct
     2461 cggctgccag gagcgctcaa tctcttcggg gtcgtcggcg cggcggacgc gctcgagcgt
     2521 gtcggcgttg gcgagcagcc gcaggtagtc gccgaccttc cactccgaag ggtataggcg
     2581 cctgagcgcc acggccatct cgatgccggc cctgacgggg cggaagcgcg cgcggtcagt
     2641 gatgatgacg ttgacgcccc cgcactcctc gcccttgaag accgacgagc gcggcgtgaa
     2701 gcgcacgggg acgaagcgca cgcccgcgag gccgcgcgag ttcaggtagg cggcgaggcg
     2761 ccggccgtct atccaaggcg cgccgaccag ctcgaagggc gtgtcggtgc ctcggcccac
     2821 agagacgttc gtcgtctcaa ggagcccgac gccggggtag agggtcgcct cagtcaggct
     2881 ccgcatgttg ggcgaggggt tgacccaggt ctgccccgtc gcgtcgagga acatgccgcg
     2941 ccgccagttc tccataacta tgacgcgaag gtcgcagttg atgccgcgct gaacgttgaa
     3001 gaggcgcgcg agctcgccta cggtcatgcc gtggcggacg gggatcgtgt gatagacgac
     3061 gaagctgagc ttgtcggggt cggccagggg gccttcgact tccgccccgc cgatggggtt
     3121 cggccggtcg aggacgaaga cgggcttccc ggccttcgcg gcctcctcca tggcgtagcc
     3181 gagcgtcgag atgtatgtgt agaagcgcgt gcctatgtcc tgtatgtcga agacgagcgc
     3241 gtcgaggtct ttaagctgtt cgggcttcgg gcggcgcgtc tcgccgtaga gcgagtagat
     3301 gggaaggccc gtcttctcgt caacggcgtc ggagaccttc tcgtccgact gcccgcgtat
     3361 gccgtgctcg ggcgagaaga gggcggcgag ctttacgttc ggcgcctcgc gcagcacgtc
     3421 aatcgtctgg cggccacgcc ggtcgcggcc cgtgtggttc gttatcagcc cgacgcgcat
     3481 gccggccaac tgcttgaagc cgtcgcggtc gagcacgtct atgccgctta agacttcagc
     3541 atccgtcggc gcgagcaggc cgcccgcttc gtctgcgcgc gcctcggccg tcgagaccgt
     3601 gaagcgcacc aggcccgcca gcatgttctc ggtgtacttg gtctgctcga cctgcgcggc
     3661 ggcggccacg cccacgtccg ttatcgcccc ggcggcgatg ttcgccacgc gcgcgcgcaa
     3721 cgggcctacg tcgccccgtc cgtcggggtg tacgcggttc gagaggaaga cgacgaagga
     3781 ctcgctggcg gggtctatcc agaccgatgt gcctgtgaag cccgtgtggc cgaaggagcc
     3841 aacggggtag aggtcgccgc ggttcgtcga gaagctcgtg ttgatgtcga agccgagccc
     3901 gcgcgcgccg ccgtcctccg tcacctgccg cggccgtgtc atctcggcga cgcttaaggg
     3961 gcttaaaatc ctcgcgccgc cgtactcgcc gccgcgcagg atcatctggc agaagacggc
     4021 gaggtcgtcg gccgtcgtga acagcccggc gtggccggcg actccgccca tgcggttcgc
     4081 ggtcgggtcg tggacttcgc cgcgcagcat ccgctcgccc tccgcccctt gcgcgcccgt
     4141 gccgccgagg tagctgcgca tgccgcgcac gctctcggtg ggcgcgacgc gcgggaggag
     4201 gcgcgcgccg ggccggaagc cggtgtcgag catgccgagc gggacgaaga tgttgcggcg
     4261 ggcgaactcg tcgagcggct ggcccgagac gcggcggacg acttcgccca gagctatcat
     4321 cccgatgtcg ctatagacga agcgcgcgcc cggcgccgag cgcagcggct cggcgtagag
     4381 ccgcttgagc atctcgtcgt agccctgcca ctgctcgcgc aggtcgaagt cgggcgcgta
     4441 gcccgagcgg tgcgtgagca ggtgctctat cgttatcttc tccctgccct cgcccttaag
     4501 ctccgggatg aagcgcgaga ccgggtcgct caggcgaagc tccccgcgct cgacgagtat
     4561 catcatgctc gtcgccgtcg ccacaacctt cgtcaggctc gccgcgtcga agacggtgtc
     4621 aaccgtcatg gcctcgcgct cggggacgag agagcgcgcg ccgtaagcct tccgccacac
     4681 aacgcccccg cgccgcgcca cgagcacgac ggcgcccggc agctccttcc tctctacggc
     4741 ttcattaacc gccgcgtcta tgaacgcgag gtgtttggcg gacatcccga cctttgcagg
     4801 gacggcggcc ggcagcccgg ccgcgagagc ctgccccgcg aaggcgagcg tcaacaacaa
     4861 cgcaacacaa ctccctgtcc gcgttctcat ctgcctgtca ccgcgacggc cggtaccgcc
     4921 gccgccttta cctgaacccc cgtgccgcgc gggtggaggc cggggagcgt gatggggagc
     4981 cggccagtta tgtcggcctg cccgaggaca gcgcgcgcgg ccgcacgctg taggctcggc
     5041 atgtcgccgt aggcgacgag gtatgtccga aggccgggga agctttgcag aaggtacggg
     5101 ttcccgaagc ttatgccgac gaccggcacc ttgcgctcga gaagcgcgcc caacacgcgc
     5161 gagaactgct cggggattga agtgctgttc gcggcgcccg agcgcacgcg cccgtacatc
     5221 gaggcgatga ccacgtcggc cttaagcgct cgttcgagcg cgcccttaac ctcctcttcg
     5281 gtcgcgcgcg agtcgagcac gaccgtgtcg gcgcggcggc cgaggcgcgc gagctggccc
     5341 gcgaacgggt tcgctatcca gttgcggtct tcgccgttcg tcaccgcgag gttaaagatg
     5401 ctggcgccag tgcgaacccc cgcgccgcct tcgcggctta cgagccgcgc gtcgtcgcgc
     5461 acgagcgtga tggcgcggcg cgcgacgtcg tcggcgagcg cagtcgcctc cggccccgcg
     5521 acggccgtgt caatcgcttc gagaggcgct acgcgctgct ttgctaagcc gaggtcgtac
     5581 ttcgccgcga gaatctttct cgcggactct tcgattctct tctccgtgag gcggcccgcg
     5641 cgcacggcct cgcgcaagcc ccgcacggcg gcgtccgggt ccgcgggctt cagaatcatg
     5701 tcggcgcccg cgagcacggc gcgcacggcc gcctcgtcct gcttgaagta gatggtcagg
     5761 ccgctcatgt ccatcgcgtc ggtaacgatg atgccgtcga agcccaggcc ctgcctcaac
     5821 agccccgtca acaccgtcgg cgagagcgtc cccggcaggt aggcgctctc cgagacgatc
     5881 tcgccgccct cgtccacgta ggcgggccgc acggcctcct cgcgcgggag cggcttgacc
     5941 tgcgtcgggt caatctccgg cagcccgatg tgcgcggaca taacggcgcc gacgccggcc
     6001 ttgacggcgg cgcggaacgg cacgagctct atctggtcga ggcgctcgcg cttgacgttg
     6061 atgatgggca ggccgcggtg cgagtcaacg ctcgtgtcgc cgtggccggg gaagtgcttc
     6121 gccgtggcga tgacgcccgc gccctgcgcg ccctcggtga aggcggcggc gaagcgcgcg
     6181 acctcctgcg ggtcttcgcc gtatgagcgg acgtttatga cggggttggc ggcgttgttg
     6241 ttcacgtcaa cgacgggcgc gaaaatctga tggacgccga gcgagcgcgc ctcgcgcgcc
     6301 gtcagcgcgc cctgccggcg ggctagctca gggtctcccg tcgcgcctac tgccatgttc
     6361 cagggcaggt tcacggtgtc ctcgaagcgc atccccgagc cggcctcaag gtctgccgag
     6421 attagcagcg gcaggcgcgc gtggcgctgc atgcggttga cgaggtggac tgactcatag
     6481 acggggccgc ggaagaggat gatgccgccg acgtggttct cttcgacctg ccggcgcaga
     6541 gccttgtagt cgtcgctctc ctggttgagg aaccgcgcgt tgatgccgac cgagatgagc
     6601 tg
//
LOCUS       DASPKR010000258        10987 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_939096, whole genome shotgun sequence.
ACCESSION   DASPKR010000258 DASPKR010000000
VERSION     DASPKR010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10987)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10987
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_939096"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            10..330
                     /gene="rpsJ"
                     /locus_tag="VD968_07105"
     CDS             10..330
                     /gene="rpsJ"
                     /locus_tag="VD968_07105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HYE14192.1"
                     /translation="MLNEKIRIRLKAYDHRVLDQSTSEIVETAKRTGARVAGPIPLPT
                     SKNKWTVLRSPHVDKKSREQFEIRTHKRLMDILDPTPQTVDALMKLDLPAGVDVEIKA
                     FGRQ"
     gene            441..1088
                     /gene="rplC"
                     /locus_tag="VD968_07110"
     CDS             441..1088
                     /gene="rplC"
                     /locus_tag="VD968_07110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016275270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HYE14193.1"
                     /translation="MVNGIIGKKVGMTQLFAPDGTVTPVTVIKAGPCVVVQKKEAAGK
                     DGYDAVQLGLVEDRPVKLKNVTKPMRGHFEKTGGGVPPTRVLKEFRVEGAAADLNVGD
                     HVLVNLFSEGDRIEVVGRSKGRGFQGTVKRHNFNRGPETHGSMNVRRPGSIGQSAYPS
                     RVLPGTRSSGHMGDKRVTLKGLTVARVDVENHLLMIRGSVPGANGSVVVVKKSEK"
     gene            1130..1834
                     /gene="rplD"
                     /locus_tag="VD968_07115"
     CDS             1130..1834
                     /gene="rplD"
                     /locus_tag="VD968_07115"
                     /inference="COORDINATES: protein motif:HMM:NF012782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HYE14194.1"
                     /translation="MPTVKVRNLKNEEVGDFELSDEVFGAELNEALIHAAVKAHLANA
                     RQGTVGTKTRGDVSGSGKKLWRQKGTGRARIASIRSPLWKGGGNVHGPQARDWSQPLP
                     KKMRRGALRSALSERLREGNLVVVEEFVLGEAKTKAFVSALAALGLEGRTLVVDTVEN
                     ANLLLAARNVKGAKVVGSGGVNIYDVLYYEKLVLSRSAAEQLERTLAPKRAAGAAAEE
                     SGAEEPEEGEREEEAA"
     gene            1838..2143
                     /gene="rplW"
                     /locus_tag="VD968_07120"
     CDS             1838..2143
                     /gene="rplW"
                     /locus_tag="VD968_07120"
                     /inference="COORDINATES: protein motif:HMM:NF004363.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HYE14195.1"
                     /translation="MRTIWDVIKAPVITEKALVAKEESQDGRQLLTFRVDRNATKPEI
                     KSAVERIFNVEVDSVRTINYEGKIARRGRFEGRKPSWKKAYVTLKAGQPPFDYGENI"
     gene            2217..3047
                     /gene="rplB"
                     /locus_tag="VD968_07125"
     CDS             2217..3047
                     /gene="rplB"
                     /locus_tag="VD968_07125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HYE14196.1"
                     /translation="MGIKKLTPTSPARRYQTYLTRDELTPGAEPEKSLLEPKKRISGR
                     NNNGHVTVRRRGGGHKRFYRIVDFKRDKTGVPGRVTQIEYDPNRSAHIALVTYLDGEK
                     RYIIAPAGIEVGKTVMAGPEADILPGNALPIRNIPLGTQIHNIELRPGKGGQLVRSAG
                     GFAQLVAKEGDYAQVRMPSGEVRRVPVVCYATVGQVGNVEHENVSFGKAGRSRWKGIR
                     PHVRGVAMNPVDHPHGGGEGKTSGGRHPVTPWGQPTRGYKTRKNKRTSKMIVRDRRVK
                     "
     gene            3077..3370
                     /gene="rpsS"
                     /locus_tag="VD968_07130"
     CDS             3077..3370
                     /gene="rpsS"
                     /locus_tag="VD968_07130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009001861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HYE14197.1"
                     /translation="MSRSVKKGPFVDEHLQKKVSDVRSGASRPPAIKTWSRRSTITPE
                     FVGLTFAVHNGKRHIPVYVTENMVGHKLGEFAPTRTFKGHAGTKAEKSSKPAR"
     gene            3383..3727
                     /gene="rplV"
                     /locus_tag="VD968_07135"
                     /pseudo
     CDS             3383..3727
                     /gene="rplV"
                     /locus_tag="VD968_07135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010896322.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
     gene            3935..4636
                     /gene="rpsC"
                     /locus_tag="VD968_07140"
                     /pseudo
     CDS             3935..4636
                     /gene="rpsC"
                     /locus_tag="VD968_07140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000529946.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
     gene            4764..5192
                     /gene="rplP"
                     /locus_tag="VD968_07145"
     CDS             4764..5192
                     /gene="rplP"
                     /locus_tag="VD968_07145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012741334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HYE14198.1"
                     /translation="MLMPKKVKHRKQMKGRMTGVATRGADISFGEYGLKTLEPGWITD
                     RQIEAARIAMTRHVKRGGKIWIRMFPDKPITKKPAETRMGKGKGAPDHWVAVVKPGRI
                     LYEIEGVSEELAREAMQLAAQKLPVKCKFVTRAEQEGGAV"
     gene            5195..5407
                     /gene="rpmC"
                     /locus_tag="VD968_07150"
     CDS             5195..5407
                     /gene="rpmC"
                     /locus_tag="VD968_07150"
                     /inference="COORDINATES: protein motif:HMM:NF013027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HYE14199.1"
                     /translation="MKRREEVERLSGMSDEELRDEAQRLKESLFRLNFKLALGEVDAV
                     KTVRREKKTLARVQTLMRQREQQAAK"
     gene            5596..5826
                     /gene="rpsQ"
                     /locus_tag="VD968_07155"
                     /pseudo
     CDS             5596..5826
                     /gene="rpsQ"
                     /locus_tag="VD968_07155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003022794.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
     gene            5856..6230
                     /gene="rplN"
                     /locus_tag="VD968_07160"
     CDS             5856..6230
                     /gene="rplN"
                     /locus_tag="VD968_07160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002460061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HYE14200.1"
                     /translation="MAIQMQTSLDVADNSGARRVEMIQAVGGSTKATRASLGDKIKVT
                     VKEASPDGAVKKGTVHNAVIVRTRKEVRRKDGTYIRFDQNACVLIKPDDTPIGTRVFG
                     PVARELRDRNFMKIVSLAPEVI"
     gene            6234..6578
                     /gene="rplX"
                     /locus_tag="VD968_07165"
     CDS             6234..6578
                     /gene="rplX"
                     /locus_tag="VD968_07165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HYE14201.1"
                     /translation="MAQKGTKRAKVKKGDQVIVIAGRDNGKRGRVLEVRPAEGKVKVE
                     GVAIIKRHQKANQASGRAGGIIDKEAFINISNVQLIDPQSGKPTRVRYEVAEDGSKAR
                     VAAGSGHTLDKG"
     gene            6658..7203
                     /gene="rplE"
                     /locus_tag="VD968_07170"
     CDS             6658..7203
                     /gene="rplE"
                     /locus_tag="VD968_07170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003638072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HYE14202.1"
                     /translation="MAARLKERYQREVAPALAKEFGITNPMAVPRLEKIVINMGLGEA
                     IANAKIVDTGADELRAVTGQKPVTTRAKKSIAAFKLRQGMPIGTMVTLRGERMYEFLD
                     RLVSVALPRVRDFRGVSPKAFDGRGNYTLGIRDQLIFPEIDFNKVDKTRGMNISIVTT
                     ARDDEQARALLRALGMPFRQQ"
     gene            7224..7409
                     /locus_tag="VD968_07175"
     CDS             7224..7409
                     /locus_tag="VD968_07175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003638073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HYE14203.1"
                     /translation="MAKKSMIAKAKRTPKFSARAYTRCQRCGRPRGYLRKFKLCRICF
                     RELALQGQIPGVVKSSW"
     gene            7541..7933
                     /gene="rpsH"
                     /locus_tag="VD968_07180"
     CDS             7541..7933
                     /gene="rpsH"
                     /locus_tag="VD968_07180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016281716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HYE14204.1"
                     /translation="MTDPIADMLTRMRNAIAARHSRVDIPASKLKLEIARILKEEGYI
                     NNFVTKGEGVKRVIRIFLRYDARGTSSITHLSRVSTPGRRVYMGATEIPKVLGGYGIN
                     IVSTSRGLMSGKRARRENVGGEVLAEIY"
     gene            8029..8589
                     /gene="rplF"
                     /locus_tag="VD968_07185"
     CDS             8029..8589
                     /gene="rplF"
                     /locus_tag="VD968_07185"
                     /inference="COORDINATES: protein motif:HMM:TIGR03654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HYE14205.1"
                     /translation="MSRIGKKVITVPKGVTVTVGERELEVKGPKGTLRTPVPEGVTFK
                     LEGDQLQAERASDEYRAQHGLARALANNAVVGVTEGFTKQMDLVGVGYKADIQGRKIV
                     FSLGYSHPVEFPLPEGVEAKGERVAAKSSIQQYQLTLTLTGIDKQKLGQVAAEMHNLR
                     KPDPYKGKGVRYADVQLKLKPGKTGK"
     gene            8690..9040
                     /gene="rplR"
                     /locus_tag="VD968_07190"
                     /pseudo
     CDS             8690..9040
                     /gene="rplR"
                     /locus_tag="VD968_07190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006784446.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
     gene            9136..9642
                     /gene="rpsE"
                     /locus_tag="VD968_07195"
     CDS             9136..9642
                     /gene="rpsE"
                     /locus_tag="VD968_07195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004074875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HYE14206.1"
                     /translation="MRQPTHRIPSQGLDLTDQVISINRVTKVVKGGKNLSFAALVVVG
                     DGAGHVGFGTGKAREVPVAIKKAIEAAKKSLIRIPLINNTLPHPIVGTWGAGRVLMKP
                     ASEGTGVIAGGAVRAVMQAAGVHDVRTKVLGSANPHNVVRATFDGLLNMKDPMEVARL
                     RGKQVEEL"
     gene            9664..9873
                     /gene="rpmD"
                     /locus_tag="VD968_07200"
     CDS             9664..9873
                     /gene="rpmD"
                     /locus_tag="VD968_07200"
                     /inference="COORDINATES: protein motif:HMM:TIGR01308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HYE14207.1"
                     /translation="MAEEKRQGKGGGGKVRVQYYRSAIGFSKEQKEVVRSLGFTKLNQ
                     VLERPDTPATRGAVQKVPHLIRIIE"
     gene            9892..10377
                     /gene="rplO"
                     /locus_tag="VD968_07205"
     CDS             9892..10377
                     /gene="rplO"
                     /locus_tag="VD968_07205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016911111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HYE14208.1"
                     /translation="MGLNNLRPAKGSTHKKKRVGRGPGSGLGKTAGRGNKGQKSRSGY
                     TSKVGFEGGQMPLQRRLPKRGFTNIFKKQWTEVTLAALEDNFDAGDSITPDVMHERGV
                     IAKGRRDVVVLGTGELTKALTVSAHRFTKGALRKIEAAGGTANIITPFHKPDALVPVS
                     E"
     gene            10503..>10987
                     /gene="secY"
                     /locus_tag="VD968_07210"
     CDS             10503..>10987
                     /gene="secY"
                     /locus_tag="VD968_07210"
                     /inference="COORDINATES: protein motif:HMM:NF012564.4"
                     /note="forms heterotrimeric complex in the membrane; in
                     bacteria the complex consists of SecY which forms the
                     channel pore and SecE and SecG; the SecG subunit is not
                     essential; in bacteria translocation is driven via the
                     SecA ATPase; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HYE14209.1"
                     /translation="MDKFFAAVRNMFSVPDLRKRILFTLGLLAVYRFGAHITAPGVNR
                     EQLKRVWDEVGSTLLGVLDLFSGGNFQTISVFALGVTPYITASIIVQLMTTVFPQLKR
                     IQEEGEAGRQKLNQYTRYLTVVLCLFQTFIVARWLQANDVIEASWGAVAMITVTLTTG
                     T"
BASE COUNT         2235 a         3506 c         3708 g         1538 t
ORIGIN      
        1 ttgaaagaca tgctgaacga gaaaatcaga atcaggctta aggcttacga ccaccgcgtg
       61 ctcgaccaat ccacgtccga gatagtcgag acggcgaagc ggacgggcgc gcgcgtcgcg
      121 gggccgatac cgctgccgac ctcgaagaac aagtggacgg tcctgcggtc gccgcacgtg
      181 gacaagaagt cgcgcgagca gttcgagatt cgcacgcaca agcggctgat ggacatactc
      241 gacccgacgc cgcagaccgt ggacgcgctc atgaagctcg acctgcccgc gggcgtggac
      301 gtggagatta aggcgttcgg cagacagtaa agaggctgtc ggcggtcagc aataagctct
      361 cagctttttg gctgatgcgg cggccgaagg ttttagctgg acgctgattg ctgatagctg
      421 acagctttgt ggagttcaag atggttaacg ggatcatcgg taagaaggtc gggatgacgc
      481 agctcttcgc gcccgacggg actgtcactc ccgtgacggt cattaaggcc ggcccctgcg
      541 tggtcgtgca gaagaaggag gccgcgggca aggacggcta cgacgccgtg caactcggcc
      601 tcgtagaaga ccgccccgtg aagctcaaga acgtgaccaa gccgatgcga ggccacttcg
      661 agaagacggg cggcggggtg cctccgactc gcgtgctcaa ggagttccgc gtcgagggtg
      721 ccgcggccga cctgaacgtc ggcgaccacg tcctcgtcaa cctcttctcc gagggcgacc
      781 ggatagaggt cgtcggccgc tcgaaggggc gcggcttcca gggtacggtc aagcggcaca
      841 acttcaaccg cggccccgag acgcacggct cgatgaacgt gcgccggcca ggctccatcg
      901 gccagtcggc ctacccgtcg cgcgtgctgc cgggcacgcg ctcgtcgggc cacatgggcg
      961 acaagcgcgt tacgctaaag ggcctgacgg tcgcgcgcgt ggacgtcgag aaccacctgc
     1021 tcatgatccg cgggtcggtg ccgggcgcga acggctcggt cgtcgtcgtc aagaagtcag
     1081 agaagtagct gtcggctgaa agccggcggc cgcgaacgga gtgagtgaaa tgcctaccgt
     1141 taaggtgcgc aacctgaaga acgaagaggt cggcgacttc gagctgtccg acgaggtgtt
     1201 cggcgccgag ctgaacgagg cgctgataca cgccgccgtc aaggcacacc tcgccaacgc
     1261 ccgccagggc acggtcggga cgaagacgcg cggcgacgtg tccggctccg gcaagaagct
     1321 gtggcggcag aaggggacgg gccgcgcccg tatagcaagc atccgctcgc cgctctggaa
     1381 gggcggcggc aacgtccacg gcccgcaggc gcgcgactgg tcgcagccgc tgccgaagaa
     1441 gatgcggcgc ggcgccctgc gctcggccct ctccgagcgg ctgcgcgagg gcaacctcgt
     1501 cgtcgtcgag gagttcgtct taggcgaggc caagaccaag gcgttcgtct ctgctctggc
     1561 ggcgctcggc ctcgaagggc gcacgctcgt cgttgacacc gtcgagaacg ccaacctcct
     1621 tctcgcagcg cgcaacgtga agggcgcgaa ggtcgtcggc tcgggcggcg tgaacatata
     1681 cgacgtgctc tactacgaga agctcgtgct ctcgcgctcc gcggccgagc agctcgagcg
     1741 cacgctcgcg ccgaagaggg ccgcgggcgc cgccgccgag gagtcgggcg ccgaggagcc
     1801 ggaagagggc gagcgcgaag aggaggccgc gtaagagatg agaaccatct gggacgttat
     1861 caaggcgccc gtaatcacgg agaaggcgct cgtggcgaag gaggagtcgc aggacggccg
     1921 gcagctcctc acgttccgcg ttgaccgcaa cgccacgaag cccgagatca agtcggccgt
     1981 cgagcgcatc ttcaacgtcg aggttgactc ggtgcgcacc atcaactacg agggcaagat
     2041 tgcccggcgc ggccgcttcg aggggcgcaa gccctcctgg aagaaggcgt acgtcacgct
     2101 caaggcgggc cagccgccgt tcgactacgg cgagaacatt tagacggaga ctagagaccg
     2161 ggggctagag atctgtaact agcctccggc ccctagaccc tagcctcttt aagcttatgg
     2221 gcatcaagaa acttacaccg acatcgccgg cgcggcgcta ccagacgtac ctgacgcgcg
     2281 acgagctgac gccgggcgct gagcccgaga agtccctgct cgagccgaag aagcgcatct
     2341 cgggccgcaa caacaacggc cacgtcactg ttcgccgtcg cggcggcggc cacaagcgct
     2401 tctaccgcat cgttgacttc aagcgcgaca agacgggcgt gccgggccgc gtcacgcaga
     2461 tcgagtacga cccgaaccgc tctgcgcaca tagcgctcgt cacctacctc gacggcgaga
     2521 agcgctacat catcgcgccc gccggcatag aggtcggcaa gaccgtcatg gccggccccg
     2581 aggcggacat cctgcccggc aacgccttgc ccatccgcaa catcccgctg gggacgcaga
     2641 ttcacaacat cgagctgcgg cccggcaagg gcggccagct cgtgcgctcg gccggcggct
     2701 tcgcgcagct cgtcgccaag gagggcgact acgctcaggt tcgcatgccc tcgggcgagg
     2761 tgaggcgcgt ccccgtcgtc tgctacgcga ccgtgggcca agtcggcaac gtcgagcacg
     2821 agaacgtctc cttcggcaag gcgggccgct cgcgctggaa gggcattagg ccccacgtcc
     2881 gcggcgtcgc catgaacccg gttgaccacc cgcacggcgg cggcgagggc aagacctccg
     2941 gcggccggca ccccgtgacg ccctggggcc agccgacgcg cggctacaag acgcgcaaga
     3001 acaagcgcac ctcaaagatg atagtgcgcg accgcagggt gaagtaattt tcggcagtgg
     3061 agctgagtga aacgttatgt cccgttcggt aaaaaaaggc ccgttcgttg acgagcattt
     3121 gcagaagaag gtgagcgacg tgcgctcggg cgcgagccgc ccgccggcca taaagacctg
     3181 gtcgcggcgc tcgaccatca cgcccgagtt cgtcggcctt accttcgccg tccacaacgg
     3241 caagcgccac atacccgtct atgtgacgga gaacatggtc ggccacaagc tcggcgagtt
     3301 cgccccgacg cgcaccttca agggccacgc cgggacgaag gcggagaagt cgtcgaagcc
     3361 ggcgagataa gaggttcctt ttatggatgc gagagcgagt gcgaagtatt tgcgcgggtc
     3421 gccgcagaag gcgcggctcg tcgttgacat gatccggggc aagcgcgtgg gcgaggccct
     3481 cgcgatcctc cagtacacga acaagcgcgc cgcagacggc atagagaagt gcctgcgctc
     3541 tgccatcgcc aacgcgaccg aggccgccga gcgcgccaac gtcgccgttg acccggacga
     3601 cctcttcgtc aaggcatgct tcgtggacga cggcccgacc aagcaccgcc gccgcgtgcg
     3661 ccccgccccg cagggccgcg cctaccgcga gcagcgccac ttctgccacg tgaccgtctt
     3721 ggtttcgagc gacggccgcc ccgccgccac ggcagccccg gcgcagggga aggccactgg
     3781 caaggcgaag cgcgcgacga agactgccga gccgaccgcc gccacgacgg ccaagcgcgg
     3841 cgcggcgaag aaggccgcca agcccgcccc cgagtcgaag ggcgagggcg cggccgaaga
     3901 gacgacggct caggaataaa gttaggagaa gattgtgggt cagaaagttc atccttacgg
     3961 cttccgcctc ggctacaaca aggactggca ctcgcactgg ttcgccaaga agcagttcgg
     4021 cgagtacctc ctcgaagacc taaagctgaa ggcgaatttg aagggccgct tcgccggcgc
     4081 cggcgtctcg cacgtggacg tggagcgcgc cgccaaccgc ctgaagctca tcatctacac
     4141 ctcgcgcccc ggcatcatca tcgggcgtaa aggggcggag atagacaaac tcaagggcga
     4201 catctcggcg cggacgggga aggaagtgct cgtctccatt caggagatac acaagccgga
     4261 gctgaacgcg cagctacagg ccgagaagat cgcctcgcag ctagagaagc gcatagcctt
     4321 ccgccgcgcc atgcgcaaga ccgtcgagga gacgctcagg ttcggcgggc agggcatcaa
     4381 ggtcaaggtg tcgggccgcc tgaacggcgc cgagatcgcg cgcagcgagt ggcaccttca
     4441 ggggcgcctg ccgctgcaca ccctgcgcgc cgatattgac tacggcttcg cggaggcccg
     4501 gacgaccttc ggcgtcatcg gcgtcaagtg ctggatttac cgcggcgaga ttctcgaccc
     4561 gaaggccgcg atggcgcgcg gcacacagcc cgaccccatc aacgagccga ggccggagcg
     4621 cggcgacggg cgccggcccc gccgcgaccg cgacgacgac cgcccgcgcg gcccgcgcgg
     4681 cggccgcggc cgcgggccgg gcggcggcga ccgtgggtag ttgaaacgaa acgactgact
     4741 agcgattcga gggtgcattc atcatgttga tgccgaagaa ggtaaagcac cgtaagcaga
     4801 tgaagggccg catgacgggc gtagccacac gcggcgccga cataagcttc ggcgagtacg
     4861 gcctgaagac tctggagccg ggctggataa ccgaccgcca gatcgaggcc gcgcgtatcg
     4921 ccatgacgcg ccacgtcaag cgcggcggca aaatctggat acgcatgttc ccggacaagc
     4981 ccataacgaa gaagcccgcc gagacgcgca tgggcaaggg caagggcgcg cccgaccact
     5041 gggtcgcggt ggtgaagccg ggccgcatac tctacgagat agagggcgtc agcgaggagc
     5101 tagcgcgcga ggccatgcag ctcgccgcgc agaagctccc cgtcaagtgc aagttcgtca
     5161 cgcgggccga gcaggaggga ggcgcagtct agccatgaag agacgcgaag aggtggagcg
     5221 cctgtcgggc atgtccgacg aggagttgcg cgatgaggcc cagcgcctga aggagtcttt
     5281 gttccggctc aacttcaagc tcgccctggg cgaggtggac gccgtgaaga ccgtgcgccg
     5341 cgagaagaag acgctggcgc gcgtccagac gctaatgcgc cagcgcgagc agcaggcggc
     5401 gaagtagtca gaaactgagg ttttgtgatg tcagaagaga ctaaagaaga agtggcgacc
     5461 gagcgcggcg acgagggcgc ggccgaggcc acgcagtcgg ggcaggctct ggcgcagtcg
     5521 cagggcgcgg gcgttgacgc tcaggcgggc gacgcgacgg gctccgaggc cccgcgcacc
     5581 gggcgccgct cggagaaggt cggcgtcgtc gcgtcggaca agatggagaa gacgtgcgtt
     5641 gtgcgcgttg accggctgat taagcacccg aaataccgcc gctacgtccg ccgcacgtcg
     5701 aagttcatgg cgcacaacga gaagggcgcg accgtcggcg acaaggttcg catcgtcgag
     5761 acccgccccc tctccgcgca caagcgctgg cgcgtcgtcg agattatcca gaaggctgag
     5821 aagtagtcgg aaggctacgg cgaacggagt gagtcatggc tattcagatg caaacgtcgc
     5881 tggacgtggc ggacaactcg ggcgcgcgcc gcgtcgagat gatacaggcc gtcggcggct
     5941 cgacgaaggc gacgcgggcc agcctcggcg acaagattaa ggtcacggtc aaggaggcct
     6001 cgccggacgg ggccgtcaag aaggggacgg ttcacaacgc cgtcatcgtc cgcacgcgca
     6061 aggaggtgcg ccgcaaggac ggcacctaca tacgcttcga ccagaacgcc tgcgtgctca
     6121 tcaagccgga cgacacgccc atcgggacgc gcgtcttcgg ccccgtggct cgcgagcttc
     6181 gcgaccgcaa cttcatgaag atagtttcgc tcgcgccgga ggttatttaa gagatggcac
     6241 agaaggggac taagcgcgcc aaagtgaaga agggcgacca ggtcatagtc atcgccgggc
     6301 gcgacaacgg caagcgcggg cgcgtgctcg aagtcaggcc cgccgagggc aaggtcaagg
     6361 tcgagggcgt cgccatcatc aagcggcacc agaaggccaa ccaggcctcg ggccgcgccg
     6421 gcggcatcat agacaaggaa gctttcataa acatatccaa cgtccagctc atagacccgc
     6481 agtcgggcaa gcccacgcgc gtccgctacg aggtggccga ggacggctca aaggcgcgcg
     6541 tcgccgcggg cagcggccac acgctggaca agggttaatt taagaccgca gggcgccgca
     6601 tcccccggaa acgcgcgggc gagacccggg gaagacggat gaggtgagaa gagagaaatg
     6661 gcagcaagac ttaaagagcg ttaccagcgg gaagtggcgc cggcactcgc caaggagttc
     6721 ggcatcacga accctatggc ggtaccgagg ctcgaaaaga tagtcatcaa catggggctc
     6781 ggcgaggcta tagccaacgc caagatagtt gacacggggg cggacgagct gcgcgccgtc
     6841 acgggccaga agccggtgac tacgcgcgcc aagaagtcca tcgcggcctt caagctccgc
     6901 cagggcatgc ccatcggcac gatggtcacg ctgcggggcg agaggatgta cgagttcctg
     6961 gaccggctgg tgtcggttgc cctgccgcgc gtgcgcgact tccggggcgt ctcgccgaag
     7021 gcgttcgacg gccgcggcaa ctacacgctc ggcatacgcg accagctcat cttccccgag
     7081 attgatttca acaaggtgga caagacgcgc gggatgaaca tctcgatcgt cacgaccgcc
     7141 cgcgacgacg agcaggcgcg cgccctcctt cgggcgctcg gcatgccgtt ccgccagcag
     7201 taaaaacgga gagagaaggc acgatggcta agaagtcaat gatcgcgaaa gcgaagcgca
     7261 caccgaagtt ctccgcgcgc gcctacacgc gctgccagcg gtgcgggcgg ccccgcggct
     7321 acctgcgcaa gttcaagctg tgccgcatat gcttccgcga gctggcgctc cagggccaga
     7381 tacccggagt cgtcaagtcg agctggtaaa agagcggtcg gcaatcagcg gtcagccctc
     7441 ggctcttcga gcggggccgc gggttgaacg gttcaagcca cgccgcttgt cttgctgact
     7501 gccggtagct gatagctgaa agtttattgg agtttgagta atgactgacc ctattgccga
     7561 catgctgacg cggatgcgca acgccatcgc ggcgcgccac tcgcgcgtgg acatcccggc
     7621 ctcgaagctg aaactcgaga tagcccgcat cctcaaggag gagggctaca tcaacaactt
     7681 cgtcacgaag ggcgagggcg tcaagcgcgt catacgcatc ttccttcgct acgacgcccg
     7741 cggcacctcc tcgatcacgc acctctcgcg cgtctccacg ccgggccggc gcgtgtacat
     7801 gggcgcgacc gagataccga aggtgctggg cggctacggc atcaacatcg tctcgacctc
     7861 gcgcggcctg atgtcgggca agcgcgcgcg ccgcgagaac gtcggcggcg aagtcttggc
     7921 ggagatttac tagagactag aggccagaga ccaagggctg gttagtcaca gattcttact
     7981 agcccccagc ctccagccct agcatctttt taaccgaagg ttaaagccat gtctcgcatt
     8041 ggaaagaaag tcataaccgt cccgaagggc gtcaccgtga ccgtcggtga gcgggagctg
     8101 gaggtgaagg ggccgaaggg gactcttcgg actccggtgc cggagggcgt caccttcaag
     8161 ctcgaaggcg accagctaca ggccgagcgc gcctcggacg agtaccgcgc gcagcacggc
     8221 ctcgcgcgcg cactcgccaa caacgccgtc gtcggcgtga ccgagggctt cacgaagcag
     8281 atggacctgg tcggcgtcgg ctacaaggcc gacatacagg gccgcaagat agtcttctcc
     8341 ctgggctact cgcaccccgt ggagttcccc ctgcccgagg gcgtcgaggc gaagggcgag
     8401 cgcgtcgccg ccaaaagctc catacagcaa taccagttga cgctcacgct cacggggatt
     8461 gacaagcaga agctcgggca ggtcgccgcc gagatgcaca accttcgcaa gcccgacccc
     8521 tacaagggca agggcgtgcg ctacgccgac gtgcagctca agctcaagcc cggcaagacc
     8581 ggcaagtaac aaaccatcgg gtttaggccc gcggttcccc gctgggggaa tcaccccttg
     8641 tgagcagctc acatcggcat gcgcggggcc taaaggagtg aacttagaaa tggctagaaa
     8701 agacagggcg acggttcgca aggcggtgcg cacgcgcata cgccgcaagg ttcgcggcac
     8761 gggcgagcgt ccgcgcctcg cgatattccg cagcctgaac cacatctacg cgcagttgat
     8821 tgacgacgag aacggggcga ccctggcctc ggcctcgacc acggagaagg acttgcgcgg
     8881 ctcgacgggc gggaacgtcg aggcggccac tcgcgtcggc cgcgccatag ccgagcgcgc
     8941 gctcgcgaaa ggcgtcgagc aggtggtctt cgaccgcggc ggcttccgct accacgggcg
     9001 cgtcaaggct ttagtcgagg cggcgcgcgc ggcgggcctc aacaagaacg agtcggcggg
     9061 cgaagagggc gggggcggcg gcggggccgc ggaggaagtc gccgcctagc ggcggaggtt
     9121 tttgaaaggt aagcgatgcg acaacccaca cacagaatcc cttcacaggg cctcgacctg
     9181 accgatcagg tcatctcgat taaccgcgtg acgaaggtcg tcaagggtgg caagaacctc
     9241 tcgttcgccg cgctcgtcgt cgtaggcgac ggcgccggcc acgtgggctt cggcacgggc
     9301 aaggcgcgcg aagtccccgt cgccatcaag aaggcaatcg aggcggcgaa gaaaagcctc
     9361 atacgcatcc cgctcatcaa caacacgctg ccgcacccca tcgtcggcac gtggggcgcg
     9421 gggcgcgtgc tgatgaagcc ggcctcggaa ggcacgggcg tcatcgccgg cggggcggtg
     9481 cgcgccgtca tgcaggcggc gggcgtccac gacgttcgca ccaaagtgct cggctccgcc
     9541 aacccgcaca acgtcgtgcg cgccaccttc gacggcctgc tcaacatgaa agacccgatg
     9601 gaagtggccc gcctgcgcgg caagcaggtc gaggagcttt agtttcaagt cagaggtttt
     9661 gtgatggctg aagagaagag acagggcaaa ggcggcggcg gcaaggttcg cgtgcagtac
     9721 taccgcagcg ccataggttt ttccaaggag cagaaggagg tcgtgcgcag cctcggcttc
     9781 acgaagctca accaggtgct cgagcgcccg gacacgcccg ccacgcgcgg cgccgtccag
     9841 aaggtgccgc acctgatacg gattattgaa taggggttta gagagatggc tatcggtctg
     9901 aacaacctgc gcccggcgaa gggctcgacg cacaagaaga agcgcgtggg ccgcggcccc
     9961 ggctcgggcc tgggcaagac ggccgggcgc ggcaacaagg gccagaagtc ccgctccggc
    10021 tacacgagca aggtcggctt cgagggcggc cagatgcccc tccagcgccg cctgccgaag
    10081 cgcggcttca ccaacatatt caagaagcag tggaccgagg tgacgctcgc cgcgctcgaa
    10141 gacaacttcg acgcgggcga ctccatcacg cccgacgtga tgcacgagcg cggcgtcatc
    10201 gccaagggcc gccgcgacgt ggtcgtgctc ggcacgggtg agcttaccaa agcgctcacg
    10261 gtctcggcgc accgcttcac gaagggcgcg ctgcgcaaga tcgaggccgc gggcggcacc
    10321 gcgaacatca tcacgccgtt ccacaagccg gacgcgctcg tccccgtctc ggagtgagcg
    10381 ccgcgcgcgc cgctttgaca aaacagaagc gagcaggaac gctgaagacg ccgggggagt
    10441 ggcagggctc tcttcagcgt cttcagcgct atttatagcc gactgccgaa agcaggaaag
    10501 tcatggataa gttcttcgcc gccgtccgca acatgttcag cgtccccgac ctgcgtaagc
    10561 gcatactgtt tacgctgggg ctgctggccg tctatcgctt cggcgcgcac atcacggcgc
    10621 ccggcgtcaa ccgcgaacag ctcaagcgcg tctgggacga ggtcggcagc acgctgctcg
    10681 gagtgctcga cctcttctcg ggcggcaact tccagaccat ctccgtcttc gcgctcgggg
    10741 tgacgcccta catcacggcc tccatcatcg tgcagttgat gacgaccgtc ttcccccagc
    10801 tcaagcgcat acaggaggag ggcgaggccg gccggcagaa gctcaaccag tacacccgct
    10861 acctgaccgt ggtgctctgc ctgttccaga ccttcatcgt cgcccgctgg ctccaggcca
    10921 acgacgtgat agaggcatcg tggggcgccg tcgcgatgat aaccgtcacg ctgacgaccg
    10981 gcaccat
//
LOCUS       DASPKR010000259        10128 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_32700, whole genome shotgun sequence.
ACCESSION   DASPKR010000259 DASPKR010000000
VERSION     DASPKR010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10128)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10128
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32700"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            236..2560
                     /locus_tag="VD968_07215"
     CDS             236..2560
                     /locus_tag="VD968_07215"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14210.1"
                     /translation="MGFDKAKAIRAAEKYLAQGKIPAAIQEYRRIAEHDADDYTALNA
                     LGDLYARIDRKPEAVTCYRRVAEHYREQGFALKAVAVYKKVTRFDPGDRRTALALAAL
                     YEQQGLMVDARAQYLAAADASLQAGEAREALDILRRIADLDPSNTQIRLRLAEGYERE
                     GLSDQAAEAYTQAGERLAARGEQEQALEAFNKALRLRPVMHAALQGMLSARAALGTAD
                     EAAELIEGALRSKPTDTELRAMLARAYVEAESASEAERATDTLVKQDASSFTVFFDVI
                     RLYLQQGAVDDAARLLGRVAEPALTGRLDDTLIELLQEALARDPEQMEALRLLVRVYT
                     WQRDEEKLRTALERLADAAETSGDVEEERKALTQLRRLAPAEERYAERLEALGGPFEG
                     AHGEGSEARRDVPSFESFMLNDDAFAVPPAADAAPAQPGGEFEWNSVAQPGPAAADAS
                     ASFADLNDLTDAAPAAGEDAAFAGQGPPAFHEIDFGAGHAAEAQQAASPNPERMLRQE
                     LESVDFYIEQGYSDIARETLDILERQFGPHAEIESRRARVPEDLLAAAREPSPAAAPP
                     AFAETFEPTLVAAAAADSYAPAPAAQSNGSAPPAAPAEVAPSAVVEQARGGGIDPGLA
                     AVFDEFRESVEDEGEAADGDYETHYNLGLAYREMGLLDQAVEEFQSAVNIAAPDDGTP
                     RHFQCCNLLGHCFMQKGMPRMAVVWFKKGLAAPGRTDDEYKALRYELGAAYEELGDPA
                     RAIEAFSEVYAFDVSYRGVAERLQGLQKRLEVRG"
     gene            2604..2978
                     /locus_tag="VD968_07220"
     CDS             2604..2978
                     /locus_tag="VD968_07220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14211.1"
                     /translation="MASRLTVIFYIVLCLEAGFFLTVLPWVQWFGMGDWGDNFFLVYA
                     AQKTGFVGLQRAVGSGWVRGAVTGIGLLNFAMAFWEIYHFRESVRRLEGVDARAAAPR
                     EPAADAAQAQAPSDLPDNARQD"
     gene            2923..3603
                     /gene="thiE"
                     /locus_tag="VD968_07225"
     CDS             2923..3603
                     /gene="thiE"
                     /locus_tag="VD968_07225"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF014622.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HYE14212.1"
                     /translation="MPHKLKPPLTYLITPGKTSAGATPGREEFRRVLALVEDAIGAGV
                     SLVQLREKRLPARALYELASAAAALARGSGTLILVNDRADVARAAGCDGVHLTATSLD
                     ARDVRRAFGGDFIIGVSTHSQDEARRARASGADFAVLGPVFETPSKLPYGPPLGLEAF
                     AESARALAPFPLVALGGVARENLSELFGAGAAGVAAIRMFAEAGDLAGLVREVRRAGC
                     HEARDEGY"
     gene            3590..4426
                     /gene="thiD"
                     /locus_tag="VD968_07230"
     CDS             3590..4426
                     /gene="thiD"
                     /locus_tag="VD968_07230"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HYE14213.1"
                     /translation="MKDIEGVTEEYQERAAPPVALTIAGLDPSGGAGVIADVKTFTAF
                     GCFAAAAVTSLTYQNTTGVFGAAHASAESVHRQVLPVVEDFRVAGAKTGMLPTREIIS
                     EVARLFREEALPAPVVDPVVRSTSGFDLIDDEALAALKRELMPLARILTPNIPEAERI
                     TGLSISGEEGMLAAARRMREMGARAVLVKGGHLTTQALDILVDDGGAVKRFSAERVET
                     TSTHGTGCTLAAGIAACLARGMTLEESIGAAKRYVTDAIIAAPRLGRGHGPVNHGLPA
                     RV"
     gene            4475..5830
                     /locus_tag="VD968_07235"
     CDS             4475..5830
                     /locus_tag="VD968_07235"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HYE14214.1"
                     /translation="MKDHNRIGARPLAALAACLLLAATARVGAQGDLTGGVGQFAIQP
                     KKEKAIAQARPRAQRAGAVPSGGGARPSGGAKPGGAGRPAAKPTPAAALTPDDKLFAA
                     IADGNSAAAEDLLTRGANLNAKSREDGCTALVYAAAGKDRRLPHTLLAKGADAKGACA
                     DGVTALMVAAEAGDAELARALVERGADVSSKSADARTALIFAASNGHAEVARFLLSKG
                     AEVDARYRDGRTALTFAAANGHTAVASELIAKGADVNARPDDGWAPLLWASWFGHAEV
                     VKLLLDKGADVSARDRENDTALMKAATQEHPAIVEMLLARGADARARGNGGGTALLFA
                     SARGRFEIVEALLAKGADVNARNDAGLTPVILAAAYGRIPTLEVLIERGADVNARTPK
                     GFTALIAAANKGLAGTVSLLLEHGADVNAKYEDGRTALTFAQQNGQTKVVEILKAAGA
                     R"
     gene            complement(5876..6367)
                     /locus_tag="VD968_07240"
     CDS             complement(5876..6367)
                     /locus_tag="VD968_07240"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYE14215.1"
                     /translation="MANRVARIETNMGTIRFELLEDEAPKTAENFRLLAERGFYDGVI
                     FHRVIEGFMIQGGDPTGTGRGGASAWGGRFDDEINRSSALYSGAYEKGTVAMANAGPN
                     TNGSQFFIMHADYRLPPSYTKFGRVIEGQDVVDKIATTQTGPGDRPVKDVRMEKVTIE
                     EAQ"
     gene            complement(6367..7248)
                     /locus_tag="VD968_07245"
     CDS             complement(6367..7248)
                     /locus_tag="VD968_07245"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF019887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HYE14216.1"
                     /translation="MGIRLIALDLDGTLLNSRGELSERNRAAVAAARGAGAEVALVTG
                     RRFRDARPLALELGLDVPVIAHNGALTKHARTLETVAVSLMPAESARAVVALGRAHGA
                     DALVSDDHEGAGLLLYDQISEGNTALAKYIAWSRRVVGDEAATAVRRVPSLEGYLDHD
                     PVHVTFSGGCAAMRRLADEMGRELGGAVKLLLTLYPRADFALLDVLHPNASKGAGLAA
                     VAAEMGLGREEVMAVGDNFNDVEMLEYAGTGVLMGNAEPPLRERAGFHLTAANDEDGV
                     AQAIEKFVLQPLSGRQV"
     gene            7587..8678
                     /gene="pstS"
                     /locus_tag="VD968_07250"
     CDS             7587..8678
                     /gene="pstS"
                     /locus_tag="VD968_07250"
                     /inference="COORDINATES: protein motif:HMM:TIGR00975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HYE14217.1"
                     /translation="MIPTAKTLRAALALLLVSSAALAAACSGERGGVGPGGGAVRLQG
                     AGATFPNPLYQKWLSEYGKANPGVRIDYQSIGSGGGIKQIKEQTIDFGATDAPMTTED
                     MRSAPGELLHIPTVLGAVVITYNLQGVAQPLRFSPDVIADIFLGKLKRWDDPRIKADN
                     PGASLPAADITVVHRSDGSGTSAVFTDYLSKVSPEWKEKVGSGTSPKWPVGLGGKGNE
                     GVTGQVKNTPNTVGYVELAYAVQNKLPVALIKNASGAFVEPSLDAVTAAAAESLPVTP
                     PDLRVSITNAGGANAYPIASYTYILAYKDQKDPVKGKALVDFLWWGIHEGGGFARDLQ
                     YAPLPADIVKRAEAQINSITSGGKPLRGR"
     gene            8743..9756
                     /gene="pstC"
                     /locus_tag="VD968_07255"
     CDS             8743..9756
                     /gene="pstC"
                     /locus_tag="VD968_07255"
                     /inference="COORDINATES: protein motif:HMM:TIGR02138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HYE14218.1"
                     /translation="MKNPAPLPAASPTAGHGARSRAWDWRRALSPTGNLGDAIFRGLL
                     SCCALLIVAVVVAMFVEIGSNARLSIDEFGLSFLTGRDWDPIRGEFGALPFVYGTVVS
                     SLLGLLIAVPFSLGVAVFLVEQAPRRLARPIAFMVELLAAIPSVVYGLWGIFVLAPFM
                     REHVGPPLQKWLGWLPLFQGTVTGVGLLTGGVILAIMVTPIITAVVRDVLAAVPVSQR
                     EAALALGATKWETTRVVLANGGPGIAGAVILGLGRAVGETMAVTMVIGNRPEISASLF
                     EPSYTIASVIANEFTEATGDLYLSALVELGLVLFLVTFVINGAARLLVWSVTRGTSGV
                     GRA"
     gene            9836..>10128
                     /locus_tag="VD968_07260"
     CDS             9836..>10128
                     /locus_tag="VD968_07260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14219.1"
                     /translation="MTTLTAACAFAVVGVLALILGYIIWQGVSSLSLQFLIDTPKPVG
                     EGGGIGNAILGTLILLLLASAIGLPVGVAAGTYLAEFGRGWFAGLVRFIADTLT"
BASE COUNT         1570 a         3599 c         3435 g         1524 t
ORIGIN      
        1 gcggcccgcg ccggcccggc ccgctcagtt tttaccgcaa acgggcggcc cgtaagcctt
       61 tcggaagatg atgttgacac ccgcgttacc gcgtgctagc gtacaaaatt gcccgtcctc
      121 ggagacaggg gcgagagcca gtgactggaa ttctccgccg ggcgagagca ccctgtcgct
      181 gccccacgcc tcgcgtcgct tcaggcgcac accccccggg gccgtaaatt cataaatggg
      241 attcgacaag gcaaaagcca tccgcgcggc cgagaagtac ctcgcgcagg gcaagattcc
      301 ggcggccata caggagtatc gccgcatcgc cgagcatgac gcggacgact acaccgcgct
      361 caacgcgctc ggcgacctct acgcgcgcat agaccgcaag cccgaggccg tgacctgcta
      421 ccgccgcgtc gccgagcatt atcgcgaaca aggcttcgcg ctcaaagccg tcgccgtcta
      481 taagaaggtc acgcgcttcg acccgggcga ccgccgcacg gcgctggcgc tcgccgccct
      541 atacgagcag caggggctga tggtggacgc gcgcgcgcag tacctcgccg ccgccgacgc
      601 ctcccttcag gccggcgagg cgcgcgaggc gctcgacatc ctgcgccgca tagccgacct
      661 cgacccctcc aacacgcaga tacgcctgcg gctcgccgag ggctacgagc gcgaggggct
      721 cagcgaccag gcggccgaag cctacacgca ggccggcgag cgcctggccg cgcgcggcga
      781 gcaggagcag gcgctcgaag ccttcaacaa agcgttgcgc ctgcgccccg tcatgcacgc
      841 ggcgcttcag ggcatgctct cggcgcgcgc cgcgctcggc acggccgacg aggcggccga
      901 actgatcgag ggcgcgctgc gctcgaagcc caccgacacg gagcttcggg cgatgctcgc
      961 ccgcgcctac gtcgaggccg agtccgcctc cgaggccgag cgcgcgaccg acacgctcgt
     1021 caagcaggac gcttcgagct tcacagtctt cttcgacgtg attcgcctct atctgcaaca
     1081 gggggccgtg gacgacgccg cccgcctgct cggccgggtc gccgagccgg cgctgacggg
     1141 caggctggac gataccctga tcgagctcct acaggaggcg ctcgcgcgcg accccgagca
     1201 gatggaagcg ctgcggctgc tcgtgcgcgt ttacacgtgg cagcgcgatg aggagaagct
     1261 gcgcacggcg ctcgagcgcc tcgccgacgc tgccgagacc tccggcgacg ttgaggagga
     1321 gcgcaaggcg ctcacgcaac tgcgccgcct cgcgccggcc gaggagcgct acgccgagag
     1381 gctcgaagct ttgggcggcc ccttcgaggg agcgcatggg gagggctcgg aggcccggcg
     1441 agatgtgccc tcattcgaga gcttcatgct caacgacgac gccttcgccg tgccgcccgc
     1501 ggcagacgcg gcccccgcgc agcccggagg cgagttcgag tggaactccg tagctcagcc
     1561 cgggcctgcg gcggccgacg cgagcgcttc gttcgccgac ctgaacgacc tgaccgacgc
     1621 cgcgcctgcc gcgggagaag acgccgcctt cgccgggcag ggcccgccgg ccttccacga
     1681 gatagacttc ggcgcgggcc atgcggccga ggctcagcag gccgcgtcgc cgaaccccga
     1741 gcgcatgctc aggcaggagc tcgagagcgt tgacttctac atagagcagg gctactcgga
     1801 catcgcgcgc gagacgctcg acatcctcga gcggcagttc ggcccgcacg ccgagataga
     1861 gagccgccgc gcccgcgtcc ccgaagacct gctcgccgcc gcgcgcgagc cttcgcccgc
     1921 cgcggccccg ccagccttcg cagagacctt cgagccgacg ctcgtcgcgg cggccgccgc
     1981 cgactcctac gcgcccgccc ccgccgctca gtcaaacggg agcgcgccgc ccgcggcccc
     2041 cgcggaagtc gcgccctcgg cagtcgtcga gcaggcccgc ggcggcggca ttgaccccgg
     2101 cctcgccgcg gtcttcgacg agttccgcga gtcggtcgag gacgaaggcg aggcggcgga
     2161 cggcgactac gagactcatt acaacctcgg gctcgcgtat cgcgagatgg ggctgctcga
     2221 tcaggcggtc gaggagttcc agtcggcggt gaacattgcc gcgcccgacg acggcacgcc
     2281 acgccacttc cagtgctgca acctcctggg ccactgcttc atgcagaagg gcatgcctcg
     2341 catggcggtc gtatggttca agaagggctt ggcggccccc ggccgcacgg acgacgagta
     2401 caaggcgctg cgctacgagc tgggggccgc ttacgaggag ttgggcgacc cggcccgcgc
     2461 catcgaagcc ttctcagagg tttacgcctt cgacgtgtcg taccgcggcg tcgccgagcg
     2521 cctgcaagga ttacagaaga ggctagaggt tagaggctag aggctaatta gaagaatatt
     2581 tttttgctag cctctgctca gtcatggctt caaggctgac cgtcatcttc tacatcgtgc
     2641 tgtgcctgga ggccggcttc ttcctgaccg tgctgccctg ggtgcagtgg ttcgggatgg
     2701 gcgactgggg cgacaacttc ttcctcgtct atgccgcgca gaagacgggg ttcgtggggt
     2761 tgcagcgcgc agtcggctcc ggctgggtgc gcggggccgt gaccgggata ggcctgctga
     2821 acttcgcgat ggccttctgg gagatatacc acttccgcga gtccgtgcgg cgcctggaag
     2881 gcgttgacgc ccgcgccgcc gccccgcgcg agcccgccgc cgatgccgca caagctcaag
     2941 ccccctctga cctacctgat aacgcccggc aagactagcg ccggcgcgac gcccgggcgc
     3001 gaggagttcc ggcgcgtgct cgcgctcgta gaggacgcca taggcgcagg cgtctccctg
     3061 gtgcaactca gagagaagcg actcccggcg cgcgcgctct atgagctggc ctcggccgct
     3121 gccgctttag cccgcggcag cggcactctc atactcgtca acgaccgcgc cgacgttgcg
     3181 cgggccgccg gctgcgacgg cgtgcacttg acggccacct cgctcgacgc gcgagacgtg
     3241 cgccgcgcct tcggcggtga tttcatcatc ggcgtctcga cgcactctca ggacgaagcg
     3301 cgccgcgcgc gcgcctcggg cgcggatttt gccgtgctcg gcccagtctt cgagacgccc
     3361 tcgaaactcc cctacggccc gccgctcggc ctcgaagctt tcgccgaatc ggcccgcgcg
     3421 ctcgcgccct tcccgctggt cgcgctcggc ggcgtcgcgc gcgagaacct ttcggaactc
     3481 ttcggggcgg gcgcggcggg agtcgccgcc atacgcatgt tcgcggaggc gggcgacctc
     3541 gccgggctcg tccgcgaagt gcgccgcgcc ggttgccacg aggcgcgcga tgaaggatat
     3601 tgaaggcgtg acggaagagt atcaggagag ggcggccccg cccgtcgcgc tcacaatcgc
     3661 cgggctcgac ccttcgggcg gcgcgggcgt catcgccgac gtgaagacct tcacggcctt
     3721 cggctgcttc gcggccgccg ccgtcacgtc gctcacctac cagaacacga ccggggtctt
     3781 cggcgcagct cacgcctcgg ccgagtctgt gcaccgccaa gtcttgcccg tcgtggagga
     3841 cttccgcgtg gccggcgcca agacggggat gctcccgacg cgcgaaatca tctctgaggt
     3901 ggcgcgactc ttccgcgaag aggcgctgcc cgcgcccgtg gttgacccgg tcgtgcgctc
     3961 gacctccggc tttgatttga ttgacgacga ggcgctcgcc gcgctcaaga gggaactgat
     4021 gccgctcgcg cgaatactta cgcccaacat tcccgaggcg gagcgcatca caggtctcag
     4081 catctcgggc gaggagggga tgctcgccgc ggcccgccgc atgcgcgaga tgggcgcgcg
     4141 cgccgtgctc gtgaagggag gccacctgac gacgcaggcc ctcgacatcc tcgttgacga
     4201 cggcggcgcc gttaagaggt tctccgccga gcgcgtcgag accacctcga cgcacgggac
     4261 gggctgcacg ctcgccgccg gaatcgccgc gtgcctcgcg cgcggcatga cgctcgaaga
     4321 gtcaatcggc gcggccaagc gctacgtgac cgacgccatc atcgcagcgc cccggctcgg
     4381 ccgcggccac ggccccgtga accacggcct gccggcgcgc gtctgaagcc ttgcgcgcgt
     4441 gcgcgcagaa acgctctccc ggactgtgag acttatgaaa gaccataaca ggataggagc
     4501 gcgcccgctc gcggcgctcg cggcgtgcct cttgctcgcg gcgacggccc gcgtcggggc
     4561 gcagggcgac ttgaccggcg gggttgggca gttcgctatc cagccgaaga aggagaaggc
     4621 aatcgcgcag gcccggccga gggcccagag ggccggcgcg gttccctcgg gcggcggcgc
     4681 caggccttcg ggcggggcga agccgggcgg cgcgggcagg cccgccgcga agccgactcc
     4741 cgcggccgcg ctcacgcccg acgacaaact cttcgccgca atcgccgacg gcaactccgc
     4801 ggccgccgaa gacctgctca cgcgcggcgc gaacttgaac gcgaagagcc gcgaggacgg
     4861 ctgcacggct ctcgtctatg cggccgccgg caaggacagg cggttgccgc acacgctcct
     4921 cgctaagggc gcggacgcta agggggcgtg cgctgacggc gtgacggcct tgatggtcgc
     4981 ggccgaggcg ggagacgccg agctggcgcg cgccctcgtc gagcgcggcg ccgacgtgag
     5041 ctcgaagtcc gccgacgccc gcacggccct catcttcgcc gcctcgaacg gccacgcgga
     5101 ggtcgcgcgc ttcctgctct cgaagggcgc cgaggttgac gcgcgctaca gggacgggcg
     5161 cacggccctg acgttcgccg cggccaacgg ccacacggcc gtcgcttcgg agctgatagc
     5221 gaagggcgcc gacgtgaacg cgcggcccga cgacggctgg gcgccgctgc tctgggcctc
     5281 gtggttcggc cacgcggagg tcgtgaagct tttgctcgat aagggcgccg acgtttcggc
     5341 gcgtgaccgc gagaacgaca cggcgctgat gaaggccgcg acgcaggagc acccggccat
     5401 cgtcgagatg ctgctcgcgc gcggggccga cgcgcgcgcc cgcggcaacg gcggcggcac
     5461 cgcgcttctg ttcgcctcgg cgcgcgggcg cttcgagata gtagaggcgc tccttgcgaa
     5521 gggcgccgac gtgaacgccc gcaacgacgc cggtctcacg cccgtcatcc ttgcagccgc
     5581 ctacggccgc atcccgacgc tcgaagtttt aatcgagcgc ggcgccgacg tgaacgcccg
     5641 cacgcccaaa ggcttcacgg cgctcatcgc cgcggccaac aaggggctcg cgggcacagt
     5701 ctcgctcctg cttgagcacg gcgccgacgt gaacgccaag tacgaggacg gccgcaccgc
     5761 cctcaccttc gcgcagcaga acggccagac gaaagtcgtc gagatcctca aggccgccgg
     5821 cgcccggtga gttgagagca gttatgagtt aagacagcct actcgtcgtc actcgtcact
     5881 gcgcctcttc tatcgtcacc ttctccatcc tcacgtcctt gacgggccgg tcgccggggc
     5941 ccgtctgcgt cgtggcgatt ttgtccacga cgtcctgccc ctcgatgacg cggccgaact
     6001 tggtgtagga gggcgggagc ctgtagtcgg cgtgcatgat gaagaactgc gagccgttcg
     6061 tgttcggccc cgcgttcgcc atcgccaccg tccccttctc gtaggcgccg ctgtagagcg
     6121 ccgacgagcg gttaatctcg tcgtcgaagc gcccgcccca ggccgacgcc cctccgcggc
     6181 ccgtccccgt cgggtcgccg ccctgtatca tgaagccctc gatgacgcgg tggaatatca
     6241 cgccgtcgta gaagccgcgc tcggccagca ggcggaagtt ctccgccgtc ttcggcgcct
     6301 cgtcctccag cagctcgaag cgtatcgtcc ccatgttggt ctctattctc gccacgcggt
     6361 tagccattaa acttgcctcc ccgataaagg ttgaagaacg aacttttcta ttgcctgggc
     6421 cacgccgtcc tcgtcgttgg cggcggtcag gtggaagccc gcgcgctcgc gcagaggcgg
     6481 ctcggcgttg cccatgagaa cgcccgtgcc tgcgtactcg agcatctcga cgtcgttgaa
     6541 gttgtcgcct acggccatca cctcctcgcg cccgaggccc atctcggcgg cgacggccgc
     6601 gagccccgcg cccttcgacg cgttggggtg cagcacgtcc aatagcgcga agtccgcgcg
     6661 cgggtagagc gtgagcagga gcttgacggc gccgcccagc tcacgcccca tctcgtcggc
     6721 cagccgccgc atggcggcgc agccgcctga gaaggtcacg tgcaccgggt cgtggtcgag
     6781 gtaaccttcg agcgagggga ctcggcggac ggcggtcgcg gcctcgtcgc caacgacgcg
     6841 gcgcgaccac gcgatgtact tggcgagcgc ggtgttgccc tcgcttattt ggtcgtagag
     6901 caggagcccc gcgccctcgt ggtcgtcgct cacgagagcg tcggcgccgt gcgcgcgccc
     6961 gagggcgacg acggcgcggg ccgactcggc cggcatgagc gagacggcga ccgtctcgag
     7021 cgtgcgcgcg tgcttggtga gcgcgccgtt gtgggctatg acgggaacgt caaggcccag
     7081 ctccaaagcg agcgggcgcg cgtctcggaa gcggcggccc gtcacgagcg cgacctccgc
     7141 cccggccccc ctcgccgcgg cgacggccgc gcggttgcgc tctgacagct cgccgcgcga
     7201 gttcaggagc gtgccgtcga ggtcgagcgc gatcagtcga atccccatct gagcaaaaaa
     7261 aggcgcgccc gcgcttttca ggcaagcgct cgaatcacac cgaaataaaa gcttccgccc
     7321 gactctaaca ccctgcgcga aaggggcgca acagggctgt ccgcggcaag ctcgcgcccc
     7381 acgccgtgca ggccgagacg atggtcggtg tcggccaccg gctcctgcga gactccgagg
     7441 ggccgcctga cccccggcag cagccggcct gacccgccct tcctcattgt taacaccgat
     7501 ttagtgcgga gttcagacgg atgtaacacc gtccgagtaa cctgtcatcg tcaaaaacta
     7561 taagaagaag aggagagcaa acccccttga tccctacggc gaaaaccctg cgcgcggccc
     7621 tagcgctcct gctcgtctcc tccgcggccc tcgccgccgc ctgtagcggc gagcgcggag
     7681 gcgtcgggcc ggggggcgga gccgtccggc tccagggcgc gggagcgacc ttccccaacc
     7741 cgctctacca gaagtggctg agcgagtacg gcaaggcgaa cccgggcgtc cgcatagact
     7801 accagtccat cggctcgggc ggcggcatta agcagatcaa ggagcagacg attgacttcg
     7861 gcgccaccga cgcgccgatg acaaccgagg acatgcggag cgcccccggc gagctgctcc
     7921 acatcccgac tgtgctcggc gccgtcgtca tcacgtacaa cctccaaggg gtggcccagc
     7981 ctctccgctt ctcgcccgac gttatcgccg acatcttcct tggcaagctc aagcgctggg
     8041 acgacccgcg catcaaggcg gataaccccg gggcgagcct cccggccgcc gacatcacgg
     8101 tcgtccaccg ctcggacggc agcggcacga gcgcggtctt caccgactac ctctcgaagg
     8161 taagccccga gtggaaggag aaagtcggct cgggcacgtc tccgaaatgg ccggtgggcc
     8221 tgggcggcaa gggcaacgag ggcgtgacgg ggcaggtcaa gaacaccccg aacaccgtcg
     8281 gttacgtcga gctggcctac gccgtgcaga acaagctgcc cgtggcattg ataaagaacg
     8341 cctcgggcgc cttcgtcgag ccctcgctcg acgccgtgac ggccgcggcc gccgagagcc
     8401 tgcccgtcac tccccccgac ctgcgcgtct cgatcaccaa cgcgggcggc gcgaacgctt
     8461 accccatcgc gagctacacc tacatcctcg cctacaagga tcagaaggac ccggtcaagg
     8521 gcaaggcgct cgtggacttc ctctggtggg gcatacacga gggcgggggc ttcgctaggg
     8581 acttgcagta cgcgccgctg cccgccgaca tcgtcaagcg cgcggaggct cagatcaact
     8641 cgatcacctc cggcggtaag ccgctccgcg gtcggtgatg tgtgactagc gcagagtgag
     8701 cgacgcggta cgacctcgac tccgccctcg ggctttcgca ctatgaagaa ccccgcgcca
     8761 ctgccagcag cgagcccgac cgccggtcac ggcgcacgtt cccgcgcgtg ggactggcgc
     8821 cgcgccctct cgccgaccgg caacctgggc gacgcgattt tccgcgggct cctctcctgc
     8881 tgcgccctgc tgatcgtcgc ggtcgtcgtc gcgatgttcg tcgagatcgg ctcgaacgcg
     8941 cggctctcga tagacgagtt cggcctctcc ttcctgacgg ggcgcgactg ggaccccatc
     9001 cggggcgagt tcggggcgct cccgttcgtt tacggcacgg tcgtctcgtc gctgctcggc
     9061 ctcctgatcg ccgtcccctt ctcgctcggc gtggccgtct tcctcgtgga gcaggcgccg
     9121 cggcggctgg cgcggcccat agccttcatg gtcgaactgc tggcggcaat accgtcggtg
     9181 gtttacgggc tgtggggcat cttcgtgctc gccccgttca tgcgcgagca cgtcggccct
     9241 cctttgcaga agtggctcgg ctggctcccg ctcttccagg gcacggtcac tggggttggg
     9301 ctcctgacgg gcggggtgat actcgccatc atggtgacgc ccatcatcac ggcggtcgtg
     9361 cgagacgtgc tggcggccgt gccggtctcg cagagggagg cggcgctggc cctcggcgcg
     9421 acgaagtggg agacgacccg cgtcgtgctc gccaacggcg gccccggcat cgccggcgcc
     9481 gtcatcctcg ggctcgggcg cgcggtcggc gagacgatgg cggtgacgat ggtcataggc
     9541 aaccgcccgg aaatttcggc ctcgctcttc gagccgagct acaccatcgc ctcggtcatc
     9601 gcaaacgagt tcaccgaggc caccggcgac ctctacctga gcgcgctcgt cgaactgggg
     9661 ctcgtgctct tcctcgtcac tttcgtcatc aacggggcgg cccggctcct cgtctggagc
     9721 gtcacacggg ggacgagcgg cgtggggcgg gcctgaagga gtgtgggaag gtatgagccg
     9781 ggcgggcgcg atgaaaaggg ggccggttgt ggggcggcgc gtcgtcagtt ccgtgatgac
     9841 gacgctgacc gcggcttgtg ccttcgcagt cgtcggcgtc ctggcactga ttctcggcta
     9901 catcatctgg cagggcgtct cgtcgctgag cctccaattc ctgatagaca cgccgaagcc
     9961 ggtgggcgag ggcgggggca tcggcaacgc catcctcggc acgttgatac tgctcctgct
    10021 agcctcggcc atcggcctgc ccgtaggggt cgccgccggc acctaccttg ccgagttcgg
    10081 gaggggctgg ttcgcgggcc tcgtgcgctt catcgccgac acgctaac
//
LOCUS       DASPKR010000260         5241 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1713155, whole genome shotgun sequence.
ACCESSION   DASPKR010000260 DASPKR010000000
VERSION     DASPKR010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5241)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5241
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1713155"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1423
                     /locus_tag="VD968_07265"
     CDS             <1..1423
                     /locus_tag="VD968_07265"
                     /inference="COORDINATES: protein motif:HMM:NF036531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14220.1"
                     /translation="KAKEMPTPEEMNAAVARDIKRLEGLQNGDGGFPFWRRGDESWPY
                     VSIHVANALVRAKEKGYDVPQGMLDRSKNYLRGIESHIPKYYGRAARNSLIAYALNVR
                     ARMGERDAARTRQLIAAEGLDKLPLEAVGWILPVLSGDAASAAQVEAVRRHLNNRAEE
                     TAATAHFTSGYGDDDYLLLYSSRRADGVILEALIADQPQNDLVPKVARGLLAHRTKGR
                     WENTQENAFVLLALDRYFNTYEKTTPDFVARAWLGDAYAGSQEFRGRSTDRQQVNVPM
                     RQLAARGPAQQGLVISKEGAGRLYYRIGMTYAPASLKLAPADYGFTVERAYEAVDDAA
                     DVRRDADGTWRFKAGARVRVRLSLYAPARRYHVALVDPLPAGLEALNPSLAVTERIPE
                     DQKAEVQRAGWWWMRPWYDHQNLRDERAEAFTSLLWEGVHVYSYVTRATTPGSFVVPP
                     PKAEEMYHPETFGRGATDRVVVE"
     gene            complement(1425..2321)
                     /locus_tag="VD968_07270"
     CDS             complement(1425..2321)
                     /locus_tag="VD968_07270"
                     /inference="COORDINATES: protein motif:HMM:NF006088.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HYE14221.1"
                     /translation="MRSEGDRVGGLGAALAALRAHQWIKNLLVFVPLIMAHRVFDAAA
                     LAHAGYAFAAWCLCASAVYVTNDLLDAEADRSHPYKKRRPLASGRLSARAALVLIPAL
                     LVPGLAVALLLLPALFALSLALYLALTTAYSLSLKRVAIVDVMVLAGLYTLRVVSGGL
                     ATGIEVSPWLLAFSMFLFLSLAFVKRYTELREHGGEGSRRGYARDDMALLKSFGTASG
                     YLSVLVLALYINNSREVTVLYRRPGALWLVGPCLLYWVTRVWLLADRGRLHDDPVVFT
                     VKDPASYVVGAAVALLIIAATV"
     gene            complement(2311..4575)
                     /locus_tag="VD968_07275"
     CDS             complement(2311..4575)
                     /locus_tag="VD968_07275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14222.1"
                     /translation="MSPTPTSPEADYRPRRRLEVGDAVLALYIAAFARQFFWPVGDNR
                     AAWALTVALTAFVWLMHWRTKEAAGRTPALFWPVVALPLLFFYSLRAALPDLSWDVLD
                     YRIINAERSFRGWPIPAADFFPTRFPFNPAPDMVMGLARRLLGYRLGTLVNLGAMVWA
                     GAVLERLLRGFIRGAPARCLAVLLLLLTEQLLFEISNYMVDLLALPLMLEAARLALTS
                     HEGAREQRRTLARVGLYLGASLAFKLTNLAVAVPVLALCAYRFAARQWRFDARAAAYA
                     LAGVALPLLPYSLYIYHQTGNPVFPLYNWLFKSPYWPVLDPRTERWGPIVDDPRFKSM
                     RAWEVLLWPLLHPFRVEHTAGDLGPHWGRVSVGFLASIAGIAWRGADARVRALSFVTL
                     VCAVLWSAASGMLRYAMFVELVGGLIALYFAAHLFKTGAARLPARAGACVIVAALVAQ
                     TASSCVYAFDFEWGGRPTFFRNPGAHLPELRHLFRDRDPRAFLSDEERALFDGVGAWA
                     ESSPVTSGFQVMLKPEAPEWCLYMTEFFETEVSRRRFRRAIEASRGAPVFTLCMTEEF
                     KFATDNIRRAGFGVGRIQTLSLPYYSHRARFPTSYFIEVLPPGAGGARTFDITRAEAP
                     LPPNGFNAALTWAASPPRVLKAGELTSVRVVLRNASASRWPALGGAGGNFRILLGNHW
                     LDRSGRELIHDDGRGAIPYDLAPGEEAELLMTINAPPAPGDYTLEIDLLQEGVSWFAL
                     KGSKTLKADLRVEK"
     gene            complement(4572..>5241)
                     /locus_tag="VD968_07280"
     CDS             complement(4572..>5241)
                     /locus_tag="VD968_07280"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYE14223.1"
                     /translation="RGHALFLAGRDSSELKRMAADLRIRHGVEVETGRFDAEDFDSHG
                     EFLAGAVDRFGRLGGVVLAFGYLGDNARAREDFAEAARVIGINFTGAVSVLNHCAEYF
                     EGRRGGFVVAVSSVAGDVGRQGNYFYGAAKAGLNAYLQGLRNRLHPAGVRVVTVKPGF
                     VDTPMTYGMERMFLVASPGRVGEAVARAAVRGGEVIYAPWFWRFIMLALRLTPERARK
                     RLKI"
BASE COUNT          913 a         1758 c         1888 g          682 t
ORIGIN      
        1 caaggcgaag gagatgccga cgccggagga gatgaacgcg gcggtggcgc gcgacatcaa
       61 gcggcttgaa ggcttgcaga acggggacgg cggcttcccc ttctggcggc gcggcgacga
      121 gtcctggccc tacgtgagca ttcacgtcgc aaacgccctc gtccgcgcga aggagaaggg
      181 ctacgacgtg ccgcagggga tgctcgaccg ctcgaagaac tacctgcgcg gcatagagag
      241 tcacataccc aaatactacg gccgcgccgc gcggaattcc ctcatcgcct acgcgctgaa
      301 cgtccgcgcg cgcatggggg agcgcgacgc cgcgcgcacc cgccagctca tcgcggccga
      361 ggggctcgac aagctgccgc tcgaagccgt cggctggatt ctgccggtgc tttcggggga
      421 cgccgcctcg gccgcgcagg tcgaggccgt ccgccgacac ctcaacaacc gcgcggagga
      481 gacggccgcc acggcgcact tcaccagcgg ctacggcgac gacgactacc tgctgctcta
      541 ttcgagccgc cgggccgacg gcgtcatact cgaagcgctc atcgcagacc agccgcagaa
      601 cgacctcgtc ccgaaggtcg cgcgcgggct gttagcgcac aggacgaagg ggcgctggga
      661 gaacacgcag gagaacgcct tcgtgctgct cgcgctcgac cgctacttca acacctacga
      721 gaagaccacg cccgacttcg tcgcgcgcgc ctggctgggc gacgcttacg caggcagtca
      781 ggagttccgc gggcgctcga ccgaccgcca gcaggtaaac gtccccatgc ggcaactcgc
      841 cgcgcgcggt cccgcccagc agggcctcgt catcagcaag gagggcgcgg ggcggctcta
      901 ctaccgcatc ggtatgacct acgcgcccgc gtctttgaag ctcgcgccgg ccgactacgg
      961 ctttacggtc gagcgcgcct acgaggccgt tgacgatgcg gccgacgtgc gccgcgacgc
     1021 cgacggcacc tggcgcttca aggccggagc gcgcgtgcgc gtgagactgt cgctctacgc
     1081 gccagcgcgc cgctaccacg tcgcgctggt tgacccgctg cccgcggggc tcgaagcgct
     1141 aaacccctcg ctcgccgtca cggagcgaat acccgaagac cagaaggccg aggtgcagcg
     1201 cgccggctgg tggtggatgc gcccctggta cgaccaccag aacctccgcg acgagcgcgc
     1261 cgaagctttc acgtccctgc tgtgggaggg cgtgcacgtc tactcctacg tgacgcgcgc
     1321 gacgacgccc ggctccttcg tcgtcccgcc gccgaaggcc gaggagatgt accaccccga
     1381 gaccttcggc cgcggcgcga ccgaccgcgt cgtggtcgag taagtcagac ggtcgcggcg
     1441 atgatgagga gggcgaccgc cgcgccgact acgtagcttg cggggtcttt gacggtgaag
     1501 actacggggt cgtcgtggag gcggccccgg tctgcgagca gccacacgcg cgtgacccag
     1561 tagagcaggc aggggcctac gagccagagc gcgccgggcc tgcggtagag cacagtgacc
     1621 tctcggctgt tgttgatgta gagtgcgagg acgaggacgg agaggtagcc gctcgccgtg
     1681 ccgaagctct tgaggagcgc catgtcgtcg cgcgcgtagc cgcggcgcga gccctcgccg
     1741 ccgtgctcgc gcagctccgt gtagcgctta acgaaggcga ggctcagaaa caggaacatc
     1801 gagaaggcca ggagccacgg cgagacttct atcccggtgg cgagcccgcc cgagaccacc
     1861 cgcagcgtgt agagccctgc gagcaccatc acgtcaacga tggcgacgcg cttgagtgag
     1921 agcgagtagg cggtcgtcag cgccaggtag agcgcgagcg agagcgcgaa gagcgccggg
     1981 agcagcagga gcgcgaccgc cagccccggc acgagcagcg cggggattaa aactagcgcc
     2041 gcccgcgcgc tcaaacggcc cgacgccagc ggcctccgct tcttgtacgg gtgagagcgg
     2101 tcggcctctg cgtcgagcag gtcgttcgtc acatagacgg ccgacgcgca caggcaccaa
     2161 gcggcgaagg cgtaccctgc gtgcgcgagc gccgccgcgt cgaagaccct gtgcgccatg
     2221 atcaggggga cgaagaccag caggttcttt atccactggt gagcgcgcag cgcagcgagc
     2281 gccgccccca agcccccgac tctgtcccct tcacttctca actcttaaat ccgccttcag
     2341 cgtcttcgag cccttgagcg cgaaccagct cacgccctcc tggagcaagt caatctccag
     2401 cgtgtagtcg ccgggcgcgg gcggcgcgtt tatcgtcatc aaaagctcag cctcctcgcc
     2461 gggcgcgagg tcgtagggta tcgcgccgcg gccgtcgtcg tgaataagct cgcggcccga
     2521 gcggtcgagc cagtggttgc cgagcagtat tcggaagttc ccgccggctc ccccgagcgc
     2581 cggccaccgc gacgcgctcg cgttcctgag cacgacgcgg actgaagtca attcgccggc
     2641 cttgaggact cgcggcgggg acgcggccca cgtgagcgcg gcgttgaagc cgttgggcgg
     2701 gagcggcgcc tcggcgcgtg tgatgtcgaa cgtgcgcgcg cctcccgcgc cgggcggaag
     2761 gacttcgatg aagtaggaag tcgggaagcg cgcgcggtgc gagtagtagg gcagggagag
     2821 cgtctgtatg cggccgacgc cgaagcctgc gcggcgtatg ttgtcggtcg cgaacttgaa
     2881 ctcctccgtc atgcagaggg tgaaaacggg cgcgccgcgc gacgcctcga tggcgcgccg
     2941 gaagcggcgg cgcgacactt cggtctcgaa gaactccgtc atgtagaggc accactcggg
     3001 cgcctcgggc ttgagcatga cctggaagcc gctggtcacg gggctcgact cggcccacgc
     3061 gccgacgccg tcgaacaggg cgcgctcctc gtcggagagg aaggcgcgcg ggtcgcggtc
     3121 tctgaagagg tgtcgaagct ccggcaggtg cgcgccgggg ttgcggaaga aggtgggccg
     3181 cccgccccac tcgaagtcga acgcatagac gcacgacgag gccgtctgcg ccacgagcgc
     3241 ggccacaatc acgcacgcgc ccgcacgcgc cggcagccgc gccgcgccgg tcttgaagag
     3301 gtgggcggcg aagtagagcg cgataagccc gccgactaat tcgacgaaca tcgcgtagcg
     3361 gagcatgccc gacgcggcgc tccagagcac ggcgcaaacg agcgtgacga atgagagggc
     3421 gcgcacacgc gcgtcggcgc cgcgccaggc gatgcccgct atcgaggcga ggaagccgac
     3481 ggagactcgg ccccagtgcg gcccgaggtc gccggccgtg tgctcgacgc ggaaggggtg
     3541 caagagcggc cacagcagaa cctcccacgc gcgcatgctc ttgaagcgcg ggtcgtcaac
     3601 aatcggcccc cagcgctcgg tgcgggggtc gagcacgggc cagtagggcg acttgaagag
     3661 ccagttgtag agcgggaaga cggggttgcc ggtctgatgg tagatgtaga gcgagtaggg
     3721 cagcagcggg agcgccaccc cggcgagcgc gtatgcggcg gcgcgcgcgt cgaagcgcca
     3781 ctggcgcgcg gcgaagcggt aggcgcacag ggccagcacg ggcacggcca ccgcgaggtt
     3841 cgtcagctta aacgccaggc tcgcgccgag gtagagcccg acgcgcgcga gcgtgcgccg
     3901 ctgctcccgc gcgccctcgt gcgacgtgag cgcgaggcgt gcggcctcga gcatgagcgg
     3961 gagcgccagc aggtcaacca tgtagttgct tatctcgaag agcaactgtt cggtcagcag
     4021 cagcagcagg actgcgaggc atcgcgccgg cgcgcccctt atgaagccgc gcaggagcct
     4081 ttcgagcacg gcgcccgccc agaccatcgc gccgaggttt acaagcgtgc cgagccggta
     4141 gccgagcagc cggcgggcga ggcccatcac catgtcgggc gctgggttga aggggaagcg
     4201 cgtggggaag aagtccgcgg cggggatggg ccagccgcgg aaggagcgct cggcgttgat
     4261 gattcggtag tcgagcacgt cccacgagag gtctgggagc gccgcccgga gcgagtagaa
     4321 gaagaggagc ggcagcgcga ccacgggcca gaagagggcg ggcgtgcgcc cggccgcttc
     4381 cttcgtgcgc cagtgcatga gccagacgaa ggcggtgagc gcgaccgtca gcgcccaagc
     4441 ggcgcggttg tccccgaccg gccagaagaa ctggcgcgcg aaggccgcga tgtagagggc
     4501 gagcaccgcg tcgccgactt cgagcctgcg gcgcgggcgg tagtctgcct cgggggatgt
     4561 cggcgtgggg ctcaaatctt cagccgcttg cgggcgcgct ccggcgtgag cctgagcgcg
     4621 agcatgatga agcgccagaa ccagggggcg tagatgacct cgccgccgcg cacggccgcg
     4681 cgcgctaccg cctcgcccac gcggccgggc gaggcgacca gaaacatgcg ctccatgccg
     4741 taagtcatcg gcgtgtccac gaagcccggc ttgacggtga cgacgcgcac gccggccggg
     4801 tgcagcctgt tccttaaacc ctgaaggtat gcgttcaggc cggccttcgc cgcgccgtag
     4861 aagtagttac cctgccggcc aacgtcgccc gcgaccgacg agacggcgac gacgaagccg
     4921 ccgcgccgcc cctcgaagta ttcggcgcag tggttgagca cggacacggc gcccgtgaag
     4981 tttatcccga tgacgcgcgc ggcctcggcg aaatcctcgc gggcgcgcgc gttgtcgccg
     5041 aggtagccga acgcgagcac cactccgccc aggcggccga agcggtcaac ggcgcccgcg
     5101 aggaactcgc cgtgcgagtc gaagtcttcg gcgtcgaagc ggccggtctc gacctcgact
     5161 ccgtggcgta tgcgcaggtc tgcggccatg cgcttcagct ccgaagagtc gcggccggct
     5221 aggaagagcg cgtggccccg c
//
LOCUS       DASPKR010000261        12441 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1713611, whole genome shotgun sequence.
ACCESSION   DASPKR010000261 DASPKR010000000
VERSION     DASPKR010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12441)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12441
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1713611"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1924
                     /locus_tag="VD968_07285"
     CDS             <1..1924
                     /locus_tag="VD968_07285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14224.1"
                     /translation="KGQLKEIEGPHEREGQHPTHAWWKVMCLTGVDYFSTLGYQPGIA
                     FLAAGALSPIATLVLVLLTLFGALPMYKRVAEASPHGDGSISMLEHLLSRWKGKLFVL
                     ALLGFAATGFIITITLSAADATAHIVENPYVHDHMPALKHPVAITLVLIGLLGGVFLK
                     GFKEAIGLAVIIVVAYLALNLVVIAIGFYQIAMTPGVLARWQEAVFAHPQVKGSALMV
                     VGVALFLFPKLALGLSGFETGVVVMPLVRGDATDTQESPAGRIRNTKKLLTGAAAIMS
                     VMLILSSLITTLLIPPEEFAEATETGAPGKANGRALAYIAHTYLGDVFGTAYDLSTIA
                     ILWFAGASALAGLLNIVPRYLPRYGMAPNWAKATRPLVLVYTAIAFVVTISFKADVDA
                     QAGAYATGVLVLMGSAAIAVTLSAWKAVGWAKWAFLLISLVFAYTTVVNVIEQPEGIK
                     IASFFIIAIVFTSLVSRVWRTTELRVERIELDDAAQRYINDLIRQGCEIRIVANRRDT
                     GDASEYRFKEMEKRQDNHIPSRDPVLFFEVTPGDASEFAGALKVRGCDVDGFRVLRAE
                     SPAVPNAIAAFLLHLRDTTKKIPHVYFGWSEGNPLMYLLRYIAFGEGDTAPVTREILR
                     QVEDDPDRRPSVHVGG"
     gene            complement(2044..2430)
                     /locus_tag="VD968_07290"
     CDS             complement(2044..2430)
                     /locus_tag="VD968_07290"
                     /inference="COORDINATES: protein motif:HMM:NF024843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain containing protein"
                     /protein_id="HYE14225.1"
                     /translation="MSQAQTAEILAPADVEWSQGETQFEDRPIHCVDCGQEFVWTAGE
                     QLFFHDKGLKNEPKRCKPCKQAKNERLAAIAAAQAAGVRQRIEVSVNCAQCGQQTTVP
                     FYPSQGRPVFCRSCFLASRNGDGDGS"
     gene            2788..4071
                     /gene="purD"
                     /locus_tag="VD968_07295"
     CDS             2788..4071
                     /gene="purD"
                     /locus_tag="VD968_07295"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: protein motif:HMM:TIGR00877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HYE14226.1"
                     /translation="MKVLVIGSGGREHALCWALRRGSAGRRLRLFCAPGNAGIAEAAE
                     CVPLGATDVTALADFAERERVELTVVGGEAPLAAGLADEFARRGLLVAGPPQKAARLE
                     SSKAFAKDFMLRHGVPTARHRVAGSADEAVEILRGGEFGGEDSPVVVKADGLAAGKGV
                     VVASTRAEGQRAVRELMAGGGAAERVVIEEALKGPEASLLLWTDGRDYVLMPAARDHK
                     RVGEGDTGPNTGGMGAVTSPEVLDDETRERAVREIVEPTLAGARAEGLDFRGVLFVGL
                     MLTADGPRVLEYNVRFGDPEAQAILVRLRGDLVEIFEAVARGRLGELKVEWGEEPSAC
                     VVLAARGYPERPETGAKITGLEDAARTPGVQIFHAGTARAADGSLVTSGGRVLGVTAT
                     GPALGQALARCYDAAALINWDGLHYRRDIGEFRSQ"
     gene            4323..5048
                     /locus_tag="VD968_07300"
     CDS             4323..5048
                     /locus_tag="VD968_07300"
                     /inference="COORDINATES: protein motif:HMM:NF015945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HYE14227.1"
                     /translation="MSVWARFKRSLRALFGGLVEKTEDPELILQQTIRDMRDRVPELN
                     NSVAQVMATERLLARSKERLEQQVVDLDSKIKAAVKMNRDDIATAYIGQLQQAQLDLS
                     KTGQQLDHASRASEQARKARDNYILQMQRRTAEAMQLINQSKQAKLQEQLAQTMASFQ
                     LGDDFSTFDEMRAKIDRRAATAEAKLQLGASSVDTQMQEIEREAMDMQLQDKLLDYKR
                     QMGLLPSGEQQQSPALPSGEPNA"
     gene            5104..5937
                     /locus_tag="VD968_07305"
     CDS             5104..5937
                     /locus_tag="VD968_07305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14228.1"
                     /translation="MAERKLSLEYLKEAAMEPVNFWGMAGFAVAAAYTWSPIPLAAAL
                     IAEGAYLATVPASSLYRRLVDNRNRKRLAEMRNKQRERLIESFDPREREAVLYLKWLK
                     NKIFDNYIKFTGAKELPTNIRGLEQRWEDFVDLLDVYRRRKHHLKTINRQTVQNQLAQ
                     AERAMETADERARRVQQANVEILKRRLAQFNELERSVKLVEGQLQSIENFFGLVNDQV
                     VTLPTPERVSSLDFEQLSDSIAMTKQMLEETSDVMGVLDNHNRELGNYDLLPSSGSSA
                     K"
     gene            complement(6023..6955)
                     /gene="hslO"
                     /locus_tag="VD968_07310"
     CDS             complement(6023..6955)
                     /gene="hslO"
                     /locus_tag="VD968_07310"
                     /inference="COORDINATES: protein motif:HMM:NF001033.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HYE14229.1"
                     /translation="MTNNGRKDWLVRATAADGQIRCMAAVTTGTVSEAARRHGVSGTV
                     AAALGRTLTGALLLGAGQKEFDRLTVQITCDGPVGGITAETNAAGRVRGYVRNPEADA
                     PLNDRGKFDVRGIVGSGMFYVTYESGFEIGLYTEPYRGSVPLVSGEIGEDFAYYLAKS
                     EQIPSAVMLGVLMRARESGETYVEAAGGLMVQVMPGADERTVAAVEASVGRTPHTTAL
                     IRDGATPTDMLRAALGGLPFEVLEEREVGFTCTCSYERAISIISSIDRGELEAMLRED
                     RGAAMTCHFCNETYRIDEPSLAEIVERNGGAASR"
     gene            7352..9979
                     /locus_tag="VD968_07315"
     CDS             7352..9979
                     /locus_tag="VD968_07315"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR02504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HYE14230.1"
                     /translation="MSTVIEPKAPQGSPSPLEITGGRQGAPAEQIGLNARRVIAKRYS
                     LKDASGNAIEEWPDIVRRVVGHVSLAETDDAKRDEFYSTMTGIMLRREFVPNTPCLVN
                     AGKPSGQLAACFVLDVPDSIAGIMKTATDAAIIHQTGGGTGFTFEKLRPAGAMVRSTH
                     GVASGPVSFMNIFNTTTDTVKQGGVRRGANMGIMRVDHPDVLRFIHAKNDQHSLTNFN
                     ISVTVTDRFFEAVDKKEWYQLSFDGEPWADPVFDPVHDGPYVVYRTSDGETVTFRDAA
                     AYREAKESGLLDRCTVEEPPRPGMVYAPDVWDRIVASAHRYAEPGVIFIDEVNRHNHM
                     MRSMGPIYATNPCAEQALHFNNSCNLGSIDLAKFYDAGARVDWERLAETTRSCVRFLD
                     NVIDTCAWPLPEIDDVVKRTRPVGLGIMGFADLCLRLKIKYGSPASIDFMDEVMGFVR
                     REAWMESCRLGAEKGVFPEFYPNEEAYTKFLREQIGIPDEMAVTPRNYETTTIAPTGT
                     ISLVAETSSGVEPNFSWAYVRQDTLGKRTYVHTLAAEALGIDVDQTDQASIDAAAEHV
                     VRHEAELPDYFISAMSITAEQHVHVLAAAQRNVDNGVSKTCNGSHDDTLESVDRLYRL
                     ARELGCKAVSYYRDGSRESQVLSAVKGSEAAGEVACDPAIVTQATATEATAEAGGASA
                     LAEIPTTVARTPPLAAPSGARRTETGDVVRIERPRELRGFTWQIPFDGANLYVTVNHD
                     GQNILEVFATGPISGGVGLLASKMLRGGFDAREVARSLNKVTGTHSVWFNERLLTSPE
                     QAVAECILLTTRRMQNQPDSARAVAYQQPVIQVSVPDSVETNRNFKLTSTCPECSGDQ
                     LEHASGCDFCRDCGYSKCK"
     gene            complement(10056..11375)
                     /locus_tag="VD968_07320"
     CDS             complement(10056..11375)
                     /locus_tag="VD968_07320"
                     /inference="COORDINATES: protein motif:HMM:NF013741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HYE14231.1"
                     /translation="MRQSMYAVAIEVLFVLLLLAANGVFAMSELAVVSSRKSRLARMG
                     AGGDSGARAALELAESPDRFLSTIQIGITLIGILAGAFGGATIAEQIGERVAAVPALA
                     PYAEAVGLLVVVFAITYLSLVVGELVPKRLALNDPERIAAAVARPMGLLARLASPVVN
                     VLSFSTSAVLRLLRTKAPTDPPVTEDEIKVLIEQGTRAGVFEEAEREMVKGVFRLADR
                     RVSALMTPRLDIVWLDADAPRGEVLRKAAGSRYSRFPVCRGGLDGVLGVAKAKDLLAL
                     GLGGAADLKSVMKRPIFVPEMRSALQALEIFKSSGAHLALVIDEHGSIEGLVTMSDVL
                     EAIVGDIEPAGAPADAYAVRRDDGSWLLDGALPLDELKELLSTGALPGEERGGFQTLA
                     GFVLYMLGRVPRAADSFEWAGLRFEVVDMDGNRIDKVLVSRPPHAEG"
     gene            11612..>12441
                     /locus_tag="VD968_07325"
     CDS             11612..>12441
                     /locus_tag="VD968_07325"
                     /inference="COORDINATES: protein motif:HMM:NF024603.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HYE14232.1"
                     /translation="MKRLKKAPALLVALQLVVGSFTPLLPRMRAENLKEAVAEEGEGP
                     SGLKFRLSEAPEQAERPAPRGTPAPAEKLSDTEVARVLQRLPPLKTEAGDEQDFALRE
                     GSLPPPRAGATVLNPFPAPDERRAPDVGAAGAPEVLRRSPEGEVPLAPQVSVTFSQPM
                     VAVTSQEEAAREVPVTMTPSVPGRWRWLGTKTLIFDPADNRLPMATDFTVTVPAGARS
                     ASGAAVKAPVSWKFSTPPPKLARKFPEGGPVRRDPVVFIEFDQKIDPEAVLRKLTLRA
                     G"
BASE COUNT         2156 a         4252 c         4053 g         1980 t
ORIGIN      
        1 caaggggcag ctcaaggaga tcgaaggccc gcacgagcgc gagggccagc accccacgca
       61 cgcctggtgg aaggtgatgt gcctgacggg cgttgactac ttctccactc tgggctacca
      121 gcccggcatc gcgttcctgg cggcgggcgc tctctcgccc atagccacac tcgtgctggt
      181 tctgctcaca ctcttcggcg cgctcccgat gtacaagcgt gttgcagagg ccagccctca
      241 cggcgacggc tctatctcga tgctcgagca ccttctgtca cgctggaagg gaaagctctt
      301 cgtcctcgcc ctgctcggct tcgccgccac gggcttcatc ataacgataa cgctttcggc
      361 ggcagacgcc accgcacaca tcgtagagaa cccttacgtg cacgatcaca tgcccgcgct
      421 caagcacccc gtggcaataa cgctcgttct catcgggctg ctcggcggcg tcttcctcaa
      481 gggcttcaag gaggccatcg ggcttgccgt catcatcgtc gtcgcctacc tggccctgaa
      541 cctcgtcgtc atcgccatcg gcttctatca gatagcaatg acccccggag tgctcgcgcg
      601 ctggcaggag gccgtcttcg cgcacccgca ggtgaagggg agcgccctga tggtagtggg
      661 cgtcgcgctc ttcctgttcc ctaagctggc gctcgggctt tcgggcttcg agactggagt
      721 agtcgtgatg ccgctcgtca ggggcgacgc cacggacacg caggagagcc ccgccggccg
      781 cataaggaac acgaagaagc tcctgaccgg ggcggccgcg atcatgagcg tgatgctcat
      841 actgagcagc ctcatcacga cgctcctcat cccgcccgag gagttcgcgg aggcgaccga
      901 gacgggcgca ccgggcaagg ccaacggccg cgcgctggcc tacatagccc acacctatct
      961 gggcgacgtg ttcggcacgg cctacgacct ctcaaccatc gccatactct ggttcgcggg
     1021 ggcgtcggcg ctcgcagggc ttctcaacat agtgccgcgc tacctcccgc gctacggcat
     1081 ggcgccgaac tgggcgaagg cgacgcgccc gctcgtgctc gtctatacgg ccatcgcctt
     1141 cgtcgtgacc ataagcttca aggcggacgt tgacgcgcag gccggcgcct acgcgacggg
     1201 cgtgctggtg ctgatggggt cggccgcgat agccgtcacg ctgtccgcgt ggaaggccgt
     1261 cggctgggcg aagtgggcct tcctgctaat ctcgctcgtc ttcgcctaca cgactgtcgt
     1321 aaacgtcata gagcagcccg aaggcatcaa gatagcctcc ttcttcataa tcgccatcgt
     1381 cttcacctcg ctcgtgtcga gggtctggcg cacgaccgag ttgcgcgtcg agcgaataga
     1441 gcttgacgac gcggcgcaaa ggtacataaa cgacctcatc aggcagggct gcgagatacg
     1501 catagtggcg aaccgccgcg acaccggcga cgcctcggag tatcgcttca aggagatgga
     1561 gaagcgccag gacaaccaca taccctccag ggacccggtg ctattcttcg aggtcacgcc
     1621 gggcgacgct tccgagttcg ccggggcgct taaggtgagg ggttgcgacg tggacggctt
     1681 ccgggtgctg agggccgaga gcccggccgt gcctaacgca atcgccgcct tcctcctaca
     1741 cctgcgcgac accacgaaga agatcccgca cgtctatttc gggtggagcg agggcaaccc
     1801 tctgatgtac ctgctcaggt acatagcctt cggcgagggc gatactgcgc ccgtcacgcg
     1861 cgagatactg cgccaggttg aggacgaccc cgaccgccgc ccgtccgtgc acgtcggcgg
     1921 ttgagtcagt cgcctgaggc tttcgctgtt tcggatgtgc gcgggcgcgc tgcggcccgt
     1981 gaggcgcgca gggcggggtg gggaatctgt cctgtcaggg gggctgaggt gtttgccggc
     2041 ttgctagctg ccgtcgccgt ccccgttgcg cgaggcgaga aagcaggagc ggcagaagac
     2101 gggccggccc tgcgaagggt agaacgggac ggtcgtctgc tggccgcact gcgcgcagtt
     2161 gaccgagacc tctatgcgct ggcgcacacc cgcggcctgc gcggcggcta tcgcggcgag
     2221 gcgctcgttc ttcgcctgct tgcagggctt gcagcgcttc ggctcgttct tgagcccctt
     2281 gtcgtggaag aagagctgct cgccggccgt ccagacgaat tcctgcccgc agtcaacgca
     2341 gtgtataggg cgatcctcga actgcgtctc gccctgactc cactctacgt cggccggggc
     2401 cagaatctct gccgtttgtg cctgtgacat ggttccatcc cttttgaaag aaccccgggc
     2461 gggggcgggg cggcggcccg gaggttgtgt gactcgacag gctgctcgcg aggctctact
     2521 tctttttcag cctttatact gtcggggcta ttcgggcgct tgcagcgagg ggcggggcgg
     2581 gcctcgtgcg gcgcagattg tctgcgcgtc tttcgctccg tcggcccgtc cgtgcttgag
     2641 caagttatac atatcacgaa tttgtgtcaa gggctgtgat gaagttttta aggtcggctt
     2701 gacagccccc gcatcgcgtg acagcatcgc cgcgccgcgg cgcgaggcgg tttcagtcaa
     2761 ctcttaagga tcgcggattt acacgatatg aaggtgcttg tcatcggctc aggggggcgc
     2821 gagcacgcgc tctgctgggc cttgaggcga ggctcggccg gccgccggtt aagacttttc
     2881 tgcgcgcccg gcaacgcggg gattgctgaa gcggccgagt gcgtgccgct gggcgcgacg
     2941 gacgtgaccg ctttggccga cttcgcggag cgcgagcgcg tggagttgac ggtcgtgggc
     3001 ggcgaggcgc cgctcgccgc agggctcgcc gacgagttcg cgcggcgcgg cctgctcgtc
     3061 gcgggcccgc cgcagaaggc cgcccggctc gaatcgagca aggccttcgc caaagatttt
     3121 atgctgcgcc acggcgttcc gaccgcgcgc caccgcgtcg cgggttccgc cgacgaggcc
     3181 gtcgagattc tgcgcggcgg cgagttcggc ggggaagact ctcccgtggt cgttaaggcc
     3241 gacgggctcg cggccggcaa gggggtcgtc gtcgcgagca cgcgcgccga aggccagcgc
     3301 gccgtgcgcg agctgatggc gggggggggc gccgccgagc gcgtcgtcat cgaagaagct
     3361 ctcaaggggc cggaagcctc tctgctgctc tggacggacg ggcgcgacta cgtgctcatg
     3421 cccgcggcgc gtgaccacaa gcgcgtcggc gagggcgaca cgggtcctaa cacgggcggc
     3481 atgggcgccg tcacttcgcc cgaggtactg gacgacgaga cgcgcgagcg cgccgtccgc
     3541 gagatagtcg agccgacgct cgcgggcgcg cgcgccgagg ggctcgattt ccgcggcgtc
     3601 ctcttcgtcg gcctgatgct gaccgcagac ggcccgcgcg tgctcgagta caacgtccgc
     3661 ttcggcgacc ccgaggcgca ggcgatactc gtccgccttc gcggcgacct cgtcgagatt
     3721 ttcgaggccg ttgcgcgcgg ccgcctcggc gagttgaaag tcgagtgggg cgaggagcct
     3781 tccgcatgcg tcgtgctcgc cgcgcgcggc tacccggagc ggcccgagac tggcgcgaag
     3841 ataacggggc tcgaagacgc cgcgcgcacg cccggcgttc agatttttca cgccggcacc
     3901 gcgcgcgccg ctgacggctc gctcgtcacc tcgggcgggc gcgtcctcgg cgtcacagcc
     3961 accggccccg cgctcgggca agccctcgcc cgatgctacg acgcggccgc cctcatcaac
     4021 tgggacggcc tccactacag gcgcgacata ggggaattca gaagccagta ggcggccgaa
     4081 gaaggggatt ttactgcttt cctccctcct ccttccttct tctgcgctct gttttctccg
     4141 cgcgagaacc ctgttatact cgccgtcaag agcggtttgg aggcgtcggc gcctacgggt
     4201 agaaccctcc ggcgcgggct tacgtacaat gacattgcct cggagcggcc ttatctttcg
     4261 gggcgaacag gtttaggagc gccgcccgcg cgggccgcgg gcggtcggag gccgagaaaa
     4321 agatgagcgt ctgggcgagg tttaagcggt cgctgcgcgc gctgttcggc gggctggtcg
     4381 agaagactga agaccccgag ctgattttgc agcagaccat acgggacatg cgcgaccgcg
     4441 tgccggagct gaacaactcc gtcgcgcagg tgatggcgac cgagcgcctg ctcgccagga
     4501 gcaaggagcg gctcgagcag caggtcgttg acctcgactc gaagatcaag gccgccgtca
     4561 agatgaaccg cgacgacatc gccacggcct acatcggcca gctacagcag gcgcagctcg
     4621 acctctcgaa gacggggcag caactcgacc acgcctcacg cgcatccgag caggcgagga
     4681 aggcgcgcga caactacatc ctccagatgc agcggcgcac ggccgaggcc atgcagctca
     4741 tcaaccagtc gaagcaggcg aagctccagg agcagctcgc gcagacgatg gcctcgttcc
     4801 agctcggcga cgacttctcg accttcgacg agatgcgcgc caagatagac cggcgcgccg
     4861 ccaccgcgga ggccaagctc cagctcggcg cctcctccgt tgacacgcag atgcaggaga
     4921 tagagcgcga ggctatggac atgcagttgc aggacaagct gctcgactac aagcgccaga
     4981 tggggctcct gccgtccggc gagcagcagc agtcgcccgc gctgccctcg ggcgagccta
     5041 acgcgtgatg ggcctgtcat aaaattttta cggagtcgcc ctcgcccttg aagcaagagg
     5101 tttatggcgg agagaaagct cagtctcgaa taccttaaag aggcggcaat ggagccggtc
     5161 aacttctggg gcatggccgg tttcgcggtg gccgcggcct acacctggtc gcccataccg
     5221 ctcgcggccg ccttgatagc ggagggcgca tacctcgcca ccgtcccggc cagctcgctc
     5281 taccgccgcc tggttgacaa ccgcaaccgc aaacgcctgg ccgagatgcg caataagcag
     5341 cgcgagcgcc tgatagagag cttcgacccg cgcgagcgcg aggccgtgct ctatttgaag
     5401 tggctcaaga acaagatttt cgacaactac atcaagttca cgggcgcgaa ggaactgccg
     5461 accaacatac gcgggctcga gcagcgctgg gaggacttcg ttgacttgct cgacgtgtac
     5521 cggcgacgca agcaccacct caagaccatc aaccggcaga ccgtgcagaa ccaactcgct
     5581 caggccgagc gcgcgatgga gaccgcggac gagcgcgccc gccgagtaca gcaggctaac
     5641 gtcgagatac tcaagcgccg cctcgcccag ttcaacgagc tggagcgctc cgtcaagtta
     5701 gtcgaggggc agcttcagtc catcgagaac ttcttcggcc tcgtcaacga ccaggtcgtg
     5761 acgctgccca cgcccgagcg cgtctcctct ctcgacttcg agcagctatc cgactcaatc
     5821 gccatgacca agcagatgct tgaagagact tccgacgtga tgggcgtcct cgacaaccac
     5881 aaccgcgagc tcggcaacta cgaccttttg ccgtcgtcgg gctcctcggc gaagtaataa
     5941 aggtagagaa ctaagacgaa agggaggccg ggcctaatgc ccagcctccc tttttcatcg
     6001 cgcaccttcc gtcgcgccgc ccttaccggc tcgccgctcc gccgttcctc tcaactatct
     6061 cggcgagcga gggctcgtct atcctgtaag tctcgttgca gaagtggcag gtcatggcgg
     6121 cgcccctgtc ctcgcgcagc atcgcttcga gctcgcccct gtcaatcgag gatataatcg
     6181 agatcgcccg ctcgtaagag caggtgcatg tgaagccaac ctcgcgctct tcgagcacct
     6241 cgaagggcag gccgcccagc gccgccctca gcatgtccgt cggcgtcgcg ccgtcgcgta
     6301 tgagagcagt cgtgtgcggc gtccgcccca cggacgcctc gacggccgcg accgtgcgct
     6361 cgtccgcgcc cggcatcacc tgcaccatga gcccgccggc cgcctccacg taggtttcgc
     6421 ccgactcgcg cgcgcgcatg agcacgccga gcatcacggc cgagggaatc tgctccgact
     6481 tcgccaggta gtacgcgaag tcctcgccta tctcgccgga cacgaggggg acggagcccc
     6541 ggtacggctc ggtgtagagc cctatttcaa acccggactc gtatgtcacg tagaacatgc
     6601 ccgagccgac gatgccgcgc acgtcgaact tgccgcggtc gttcaggggc gcgtccgcct
     6661 cggggttgcg cacgtagccg cgcacacgcc ccgccgcgtt cgtctccgcc gtgatgccgc
     6721 cgacggggcc gtcgcaagtt atctgcacgg tcaggcggtc gaactccttc tgcccggcgc
     6781 ccaagagcag cgcgcccgtg agcgtgcggc ccagggcggc cgcgaccgtc cccgaaaccc
     6841 cgtgacgccg cgcggcctca gagacagtcc ccgtggtcac agccgccatg cagcggatct
     6901 gcccgtcggc ggcagtcgcc cgcaccagcc agtccttacg cccgttgtta gtcactttta
     6961 acccctcgcc ctgccgataa aaaggccagg gcattagatg aaaaaagggg gcagcatact
     7021 gcccggcggc cggggccaaa tatctaaggt aaaatctcaa aatacccgct ctattgggct
     7081 gcatctaaat cagtacacaa tatattgatt gacagccgaa aggagttggg cttatactgc
     7141 gcgccgctcg ggacgagaaa ggaacggcgc ggggcggccg gcaaagcccc cgcgacgaag
     7201 ggatttctcg ccccggcccg caggccagcc gcgcacagac cttagagaca tattctcaac
     7261 cggcgcgaca cccgcgccga acccttttag gagacctttt tctcattgag cgcctcgcgc
     7321 cccccacgag cgcgagaaag gcagaggaag aatgagcacc gtcatcgagc ccaaagcacc
     7381 gcagggaagc ccgtccccct tggagattac cggagggcgc cagggcgcgc ccgcagaaca
     7441 gatcggcctg aacgcgcgcc gcgtcatagc gaagcgctac agccttaagg acgcctcggg
     7501 caacgccata gaggagtggc ccgacatcgt ccgccgcgtc gtcggccacg tctctctggc
     7561 cgagaccgac gacgcgaagc gcgacgagtt ctacagcacg atgacgggca tcatgctccg
     7621 ccgcgagttc gtccccaaca ccccctgcct cgtcaacgcg ggcaagccgt cggggcagct
     7681 cgccgcctgc ttcgtcctcg acgtgcccga ctccatcgcc ggcataatga agacggcgac
     7741 cgacgccgcc atcatccacc agacgggcgg cggcacgggc ttcaccttcg agaagctgcg
     7801 gcccgcgggc gcgatggtgc gctcgacgca cggcgtggcg tcggggccgg tctcgttcat
     7861 gaacatcttc aacacgacga ccgacacggt gaagcagggc ggcgtgcggc gcggagccaa
     7921 catgggcatc atgcgcgttg accacccgga cgtgctccgc ttcatacacg ccaagaacga
     7981 ccagcacagc ctgacgaact tcaacatctc cgtcaccgtc accgaccgct tcttcgaagc
     8041 cgttgataag aaggagtggt atcagctctc cttcgacggc gagccgtggg ccgaccccgt
     8101 cttcgacccc gtccacgacg gcccctacgt cgtctatcgc acctcggacg gcgagaccgt
     8161 cacgttccgc gacgcggccg cctaccgcga ggcgaaggag tcgggcctgc tcgaccgctg
     8221 caccgtcgag gagccgccgc ggcccggcat ggtttacgcc ccggacgttt gggaccgcat
     8281 cgtcgcctcg gcgcaccgct acgccgagcc gggcgtcatc ttcatagacg aggtgaaccg
     8341 ccacaaccac atgatgcgct cgatggggcc gatctacgcg accaaccctt gcgcggagca
     8401 ggcgcttcac ttcaacaact cgtgcaacct cggctcgatt gacctggcga agttctacga
     8461 cgccggggcg cgcgtggact gggagcggct cgccgagacg acgcgctcgt gcgtgcgctt
     8521 cctcgacaac gtcatagaca cctgcgcgtg gccgctgccc gagattgacg acgtggtgaa
     8581 gcgcacccgg cccgtggggc tcggcatcat gggcttcgcg gacctctgcc tgcggctcaa
     8641 gatcaagtac gggtcgccgg cctcgattga cttcatggac gaggtgatgg gcttcgtgcg
     8701 gcgcgaggcg tggatggagt cgtgccgcct cggcgccgag aagggcgtct tccccgagtt
     8761 ctacccaaac gaggaggctt atacgaagtt cctgcgcgag cagataggca tacccgatga
     8821 gatggccgtc acgccgcgca actacgagac gacgaccata gcgccgaccg gcaccatctc
     8881 gctcgtcgcc gagacctcct cgggcgtcga gccgaacttc tcctgggcct acgtccgcca
     8941 ggacactctg gggaagcgca cctacgtcca cacgctcgcc gccgaggcgc tcggcataga
     9001 cgttgaccag accgaccaag cctcgattga cgcggcggcc gagcacgtcg tccgacacga
     9061 ggcggaactg cccgactact tcatctcggc gatgtccatc acggccgagc agcacgtcca
     9121 cgtcctcgcg gccgcgcaac gcaacgttga caacggtgtg tcgaagacct gcaacggctc
     9181 gcacgacgac acgctcgaat ctgttgaccg gctctaccgc ctagcgcgag agctgggctg
     9241 caaggccgtt agctattacc gcgacggctc gcgcgagtcg caggtgctct cggccgtgaa
     9301 gggctcggag gcggccggcg aggtcgcgtg cgacccggca atcgtcacgc aggcgacggc
     9361 gaccgaggcg accgccgaag cgggcggcgc gtcggccctc gcggagatac cgacgaccgt
     9421 cgcccggacg ccgccgctgg ccgcgccctc gggcgcgcgc aggacggaga cgggcgacgt
     9481 ggtgcgcatt gagcgcccgc gcgagctgcg gggcttcacc tggcagatac ccttcgacgg
     9541 cgcgaacctc tacgtcacgg tcaaccacga cggccagaac atcctcgaag tcttcgcgac
     9601 cggccccatc tcgggcggcg tgggcctcct ggcctcgaag atgctgcgcg gcggcttcga
     9661 cgcgcgcgag gtcgcccgga gcctcaacaa ggtgacggga acgcactcgg tctggttcaa
     9721 cgagcggctg ctgacttctc cagagcaggc cgtggccgag tgcatcctgc tcactacgcg
     9781 ccgcatgcag aaccagccgg actcggcgcg tgccgtggcc taccagcagc ccgtcataca
     9841 ggtcagcgtc cccgacagcg tcgagacgaa ccgcaacttc aagctcacct cgacctgccc
     9901 cgagtgcagc ggcgaccagc tcgagcacgc ttcgggctgc gacttctgcc gcgactgcgg
     9961 ctactcgaag tgcaagtagc cccgcgcgac gcgctgacgc attaaacttc tggccccggt
    10021 ttcccgagaa gggaactccg gggccggaag ctttttcacc cctcggcgtg cggcggccgc
    10081 gacaccagga ctttgtcaat ccggttgccg tccatgtcaa cgacctcgaa gcgcaggccc
    10141 gcccactcga acgagtcagc cgcgcgcggg acgcggccga gcatgtagag cacgaagccc
    10201 gcgagcgttt ggaacccgcc gcgctcctcg ccgggcagcg cgcccgttga gagcagctct
    10261 ttaagctcgt cgagcgggag agcgccgtcg agaagccacg agccgtcgtc gcggcggact
    10321 gcgtaagcgt ccgctggcgc gccggccggc tctatgtcgc cgacgattgc ctccagcacg
    10381 tcgctcatcg tcaccagccc ctcgatcgag ccgtgctcgt ctatgacgag cgccaggtgc
    10441 gcgccggagc ttttaaagat ttcgagggcc tggagcgccg agcgcatctc cggcacgaag
    10501 atcggccgct tcatgacaga tttcaagtcg gcggcgccgc cgaggccgag ggccagaagg
    10561 tctttcgcct tggcgacgcc gagcacgccg tcgagcccgc cgcggcagac ggggaatcgt
    10621 gaatagcggc tcccggccgc cttgcgcaga acctccccgc gtggggcgtc ggcgtcgagc
    10681 cacacgatgt cgaggcgcgg cgtcatcagc gcgctcacgc gccggtcggc caggcggaac
    10741 actcccttga ccatctcgcg ctcggcctcc tcgaacaccc cggcgcgcgt cccctgttcg
    10801 atgagtacct ttatctcgtc ctcggtcacg ggcggatccg tcggcgcctt agtgcgcagg
    10861 agcctcagca ccgccgaggt cgagaagcta agcacgttca ccaccggcga cgcgagccgc
    10921 gcgagcaggc ccatagggcg cgcgacggcc gcggcgatgc gctccgggtc gttgagcgcg
    10981 agccgcttcg gcacgagctc gccgacgacg agcgagaggt aggtgatggc gaagacgacg
    11041 acgagcagtc ctacggcctc ggcgtagggc gcgagcgcgg ggactgcggc gacgcgctcg
    11101 ccgatctgct cggcgatggt cgcgccgccg aaggcgcccg cgaggatgcc tatgagcgtg
    11161 ataccaatct gtatggtcga gaggaagcgg tcgggagact cggccaactc cagcgccgcg
    11221 cgcgcgcccg agtcgccgcc cgcgcccatg cgagcgagcc gcgacttgcg cgacgagacg
    11281 acggccagct ccgacatggc gaagaccccg ttcgcggcga gcagcaggag gacgaagaga
    11341 acctctatgg caacggcgta catgctctga cgcacctcag taggacgttc cgaacgcgcc
    11401 gcgaggttag cggaaaggtg cggcgatttt gttacggcgc cggggcgtcg aagggcggcg
    11461 ggcggccctg ttgtggcgcg cggcgccgga tgatatgttg gccctgaaac cgcgcaagac
    11521 ggcgggcgcg ccaacgttct tacggcgtga gtgagacctc cccgcttaaa tttgctctgc
    11581 atgaataccg aaagctctcc cgtgggacac aatgaaacgc ctgaagaaag cccccgcgct
    11641 gctcgtcgcc ctgcaactcg tcgtcggctc tttcacgccg ctcctaccgc gtatgcgcgc
    11701 cgaaaatctt aaagaagctg tcgccgagga gggcgagggg ccttcgggcc ttaagttccg
    11761 tttgagcgag gcgcccgagc aggcggagcg gcccgccccg cgcggcaccc cggcaccggc
    11821 cgagaagctc tccgatacgg aagtggctag agtcttgcag cggctcccgc ccttgaagac
    11881 cgaggccggc gacgagcagg acttcgcctt gcgcgagggc tcgctgccgc cgccccgcgc
    11941 gggcgctacc gtcttgaatc cattccccgc gcccgacgag aggcgcgcgc ctgacgtagg
    12001 ggcggcgggc gcgcccgaag tgctccgccg ctcgcccgag ggcgaagtcc cgctggcgcc
    12061 gcaggtgagc gtcacgttct cgcagccgat ggtcgctgta acttcgcagg aagaggccgc
    12121 gcgcgaagtc cccgtcacga tgacgccgtc cgtgccgggc cgctggcgct ggctcggcac
    12181 gaagacgctc atcttcgacc cggcagacaa ccgcctgccg atggcgaccg atttcaccgt
    12241 cacagtcccc gcgggcgcgc gctcggcctc gggcgcggcc gtgaaggcgc ccgtctcctg
    12301 gaagttctcg acgccgccgc cgaaactcgc ccgcaaattc cccgaaggcg gccccgtgcg
    12361 ccgcgacccc gtcgtcttca tcgagttcga ccagaagatt gaccccgagg ccgtgctccg
    12421 caagctcacc ttgcgcgcgg g
//
LOCUS       DASPKR010000262         8950 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1585045, whole genome shotgun sequence.
ACCESSION   DASPKR010000262 DASPKR010000000
VERSION     DASPKR010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8950)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8950
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1585045"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(433..2196)
                     /locus_tag="VD968_07330"
     CDS             complement(433..2196)
                     /locus_tag="VD968_07330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14233.1"
                     /translation="MENVEGVRAMAGGESPAAGGETRARAGRLASILKGRWTVLAAGA
                     LMIGAAFWYLQFSTAAICCGDYDAYYHFRWSRMLLDSALAGQFPPSFNALPLTTLNPR
                     DYVDHHFLFHVLQIPFTLFDDFQTGAKVGTWLFACLAVFACYWLLVRYRISYPLVWLV
                     AILGSSAPFLYRIHMGKAMSVSIVLLIVGIHLLFRRKYRWLLPLAFVFALTYDMFALL
                     VAASVFWAGVILWSERRLEWKPVALVAAGALLGFVINPYFPHNFQLLYQHLVIKVTPK
                     DFTTAVGSEWYPYSTWEFLGNCGTAVVAMVAGYLAFRDAASRDRQRAFFLLLFSTLLL
                     LVQMRWRRFAEYFPPFAILFAAFALEPLIAQVRARLARPVQENDAAATPSDVRASAEA
                     RMENARAWEFVLVGTALILLAAPAVWYARVTSQDIAGMGGPDRYRGGMEWISKNVPAG
                     EPVFNSDWDDFPKLFFYDPQRPFIAGLDPTYLLDRDPELMRHYERIGRGEEENPGPII
                     REKFCVGEGEARRCARYVITDHEHEPFYNNALDSGWFDEVYADDDCAILRVRDEQGPP
                     PPDNVPPGEDQPTEDGPDSGE"
     gene            complement(2275..2778)
                     /locus_tag="VD968_07335"
     CDS             complement(2275..2778)
                     /locus_tag="VD968_07335"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE14234.1"
                     /translation="MLHTAPYRPAPPRTPPVLSPALFTTEQSPAPPSAAPELGAGVKP
                     RDGKPLALVVDDAPDVTEMVAMLMRFAGYEVTTAFSAPSAFDAARASRFDVVISDIGM
                     PGMNGYQLAEALRALPGYESVPLIAVTGFSMYDNRDLALKSGFSDFLTKPINPSDLLD
                     TVNRLLG"
     gene            complement(2803..6078)
                     /locus_tag="VD968_07340"
     CDS             complement(2803..6078)
                     /locus_tag="VD968_07340"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYE14235.1"
                     /translation="MPNPQLNPPPANRARLGPHDAGAWRRAPAWWARYGLALASVAAA
                     TLLTFALKSLVGPEGVRIVFIFFFPAVLVTALYGGRAPALLALALSALVGNYFFLGPT
                     YELSLSAEELAQTALFFFVAALLVYLTHRTRDAEAGERASRESLATTLRSIGDAVIAT
                     DAAGRVTFMNDVAARLTGWPFEGAEGRPVTEVFRIVNESTREPVESPVEKVLREGAVV
                     GLANHTVLIARDGRETPIDDSGAPILDASGATAGVVLVFRDITERRRAEEETARLSAQ
                     VEAERRRLESLVASVPGVVWEAWGEPDASAQRINFVSGYVERMLGYTVGEWLSTPNFW
                     LRIVHPDDRERAAQEAHAIFESGAGGASRFRWVTKDGRAIHVEAQSVVILDERGRPAG
                     MRGVTMDISGRVAAEAGLRESEERFRSLADAMPQIVWTARPDGHTDYFNRRWFEYTGQ
                     TPEQTRGWGWQPALHPDDAERSLRRWATAVETSKPYSIEYRFRRASDGQYRWHLGRAV
                     PALDSEGRVVKWFGTATDIHDQKAAEERLRFLAEAGEILASSLDYETTLEHLARIAVR
                     AMADYCLIDVVEDDGLIRRVATAHADPEKEGLVRELRRFPPDPARAEGVPKVLRTGKT
                     ELVQPITPERLDALVRGQEHRELLERLGLASFVIVPLISRGRTIGALTFAQTGEARPY
                     APADVTFAELIARRAALAMDNARLYGRSQEVNRSKDEFLAMLSHELRTPLTPVIGWTH
                     MIRSGRLSEREVEQGLRVIDKNAQALSRLINDLLDMSSILSGKMKIDRAPVNLRAVVR
                     EAAETVRPQAEARSVGLEVSTGGLGPVNVSGDRTRLVQVFWNLLNNAVKFSRAGGLVR
                     VSVAARDGQATVEVADDGQGIAPEFLPHVFERFRQADGSTTRAHGGLGIGLALVKSFV
                     EAHGGRVSAASPGPGAGSRFSVSLPVLPAPSDGDGSGELAAEPSAEPCAESACRVLVV
                     DDAHDTLELLRVVFESRGYEIEACADAEEAVRVAASSHFDIIVSDIGLPGIDGYELIR
                     RLRTLAHLRDTPAVALTGYAAPKDAEAAAAAGFDAHVPKPVDPSALAAEVEQLLKRRA
                     AHD"
     gene            6348..7019
                     /locus_tag="VD968_07345"
     CDS             6348..7019
                     /locus_tag="VD968_07345"
                     /inference="COORDINATES: protein motif:HMM:NF042734.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta family hydrolase"
                     /protein_id="HYE14236.1"
                     /translation="MYPAGNLFIPAPHGRLEAILKEPRAGGRPRGAALVLHPHPLHGG
                     TMHNKVVFRTARGLEDAGLVTLRVNFRGVGQSTGEHDQARGGEQEDARLGLDYLDENY
                     RGLPVFLAGFSFGARVGLEVGIKDPRVGFLVGVGTPLGMEGRDYDFSFLDKCRKPLLL
                     VHGEQDEFGKASDVRALASRLAQECEARAEIIPGAGHFFDRQLEDLRRVVAAWAAEML
                     GRAGR"
     gene            complement(7032..>8950)
                     /locus_tag="VD968_07350"
     CDS             complement(7032..>8950)
                     /locus_tag="VD968_07350"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HYE14237.1"
                     /translation="QRGERRAMMETTRDKVGTGLPRRSPAAGPERVPLHQGEPGTLVE
                     AVARALRKHARPDTLNSKHGGEWRAVSSEELARRSRAIALGLYASGLRRGDRAAIISE
                     SSPEWVLVDVGCQSAGVVDVPIYPTLAPNQVRYIMDDSGSSVLFAQHREAYERVRGAL
                     AECAALRQVVLMTGEGGEEAGVITLAELERRGEALDAERPGLAEELAGAVEPDDHATI
                     IYTSGTTGEPKGVMLTHSNVVSNLIDTSDRLAFNPEDVALSVLPLSHIFERGAMYMYI
                     HHGARVFFAESLERIGDNMREVRPTLVIAVPRLFEKIYARIKDKAAEGGRVKTALLAW
                     SVGVAKRWSRLRVQKRPVPPLLALQYRLASRLVFSKWREATGGRIRLFCSGGAALPEE
                     LGHIFNGAGLPVVQGYGLTETSPVICVNSPDEDNRIGTVGRPIRNVEVRLASDGEVET
                     RGPNVMLGYYNKPEATREVFTDDGWFKTGDIGTLHAEGYLSIIDRKKELFKTSGGKYV
                     APQPIEQRIKESRFVNQVVLVGNGRKFPAALIVPNWEMLRSYAQHKGLDIKTQAEFCR
                     HPRVLDLLQRQVDSLTSDLSRFERVKRVAIIERELTIDGGELTPSLKVKHRVIDEKYK
                     DVIDRLYEEAEARP"
BASE COUNT         1394 a         2936 c         3205 g         1415 t
ORIGIN      
        1 gtcggcgtct ggctttcccc ggcgttatga gttaaagtct gcggcgcccc gtcttacgcg
       61 cgcgggcggc cggggccgcc gctcgcgcct aaggctttcg cccacctcat ccgtgaccgt
      121 ataactctac cttttacagg agataaccat gcccggcgcg aagaatcgtt tcgccgcagt
      181 ggcccttatt ctcgtcttcg gcccgtcagc actcatcggg ggcatagagt gcgggtgaat
      241 ttcggccgtc gaaggggacg ctggatgcag ggtagccttt cggccccgcc ggaatcaata
      301 aaatagaatt ccgcccgaag cgaatttaaa ggacttatcc gggcatgcaa caaattcggc
      361 atgcccggag caggcgggag tctgtttttt agccgtcttg aggaagcggc accgagggtt
      421 tcgggcggaa tttcattcgc cggagtctgg gccgtcttcg gtgggctggt cttcgccggg
      481 aggcacgttg tcgggcggcg gcggcccctg ctcgtcgcgg acgcgcagga tggcgcagtc
      541 gtcgtcggca taaacctcgt cgaaccagcc gctgtcgagg gcgttgttgt agaagggctc
      601 gtgctcgtgg tcggtgatga cgtagcgggc gcagcggcgc gcctcgccct ccccgacgca
      661 gaacttctcg cggatgatgg ggccggggtt ctcctcctcg ccgcggccta tgcgctcgta
      721 gtggcgcatc agctcggggt cgcggtcgag caggtaggtc gggtcgaggc cggcgatgaa
      781 cgggcgctgc gggtcgtaga agaagagctt ggggaagtcg tcccagtcgg agttgaagac
      841 gggctcgccc gccggcacgt tcttactaat ccactccatg ccgccgcggt agcgatcggg
      901 gcctcccatc ccggcgatgt cctgcgaggt gacgcgcgcg taccagaccg cgggggcggc
      961 gaggagtatg agcgccgtgc caaccaggac gaactcccac gcgcgcgcgt tctccatgcg
     1021 ggcctccgcc gacgcgcgca cgtcggaggg cgtggccgcc gcgtcattct cctgcacggg
     1081 ccgcgcgagg cgcgctcgca cctgcgcgat caaaggctcg agcgcgaagg cggcgaagag
     1141 gatggcgaag ggcgggaagt actcggcgaa gcggcgccag cgcatctgga cgagcagcag
     1201 gagcgtggag aagagcagta ggaagaaggc gcgctggcgg tcgcggctcg cggcgtcgcg
     1261 gaaggcgagg tagccggcga ccatcgcgac caccgccgtc ccgcagttgc ccaggaactc
     1321 ccacgtcgag tacgggtacc actccgagcc tacagccgtc gtgaagtcct tcggcgtgac
     1381 ctttatgacg aggtgctggt agagcagttg gaagttgtgc gggaagtacg ggtttatgac
     1441 gaagccgagg agcgcccccg cggcgacgag cgctacgggc ttccattcca aacggcgctc
     1501 gctccagagt attacgccgg cccagaagac gctcgcggcg acgagcaggg cgaacatgtc
     1561 gtatgtgagc gcgaagacga aggcgagcgg caggagccag cggtacttgc gccggaacag
     1621 caggtgtatg ccgacgatga gcaggacgat tgagacgctc atcgccttcc ccatgtgtat
     1681 gcggtagagg aagggggcgg agctgccgag tatggcgacc agccagacga gcgggtagct
     1741 tatgcggtag cgcacgagca gccagtagca ggcgaagacg gcgaggcagg cgaagagcca
     1801 ggtgccgacc ttcgcgccgg tctggaagtc gtcgaagagc gtgaagggga tttggaggac
     1861 gtggaaaagg aagtggtggt caacgtagtc ccgcgggttc agggtcgtca gcggcagcgc
     1921 gttgaaggag ggcgggaact ggcccgcgag cgctgagtcg aggagcatgc ggctccatcg
     1981 gaagtggtag taggcgtcgt agtcgccgca gcagatggcc gcggtcgaga actgcaaata
     2041 ccagaaggcc gcgccgatca tgagcgcccc ggccgcgagc accgtccagc ggccctttag
     2101 aatcgaggcg agccggcccg cccgcgcacg cgtctctccg cccgcggctg gcgactcgcc
     2161 gcccgccatc gctctcacgc cttccacgtt ctccataggt cacaccctcc cgaaatgcgg
     2221 acgggaaaac atagcatgaa gggggcggca gcggcgagcg cgcgccgcgc ccgttcagcc
     2281 gaggaggcgg ttgaccgtgt cgaggaggtc cgacgggttt atgggtttgg tcaggaagtc
     2341 gctgaagccg gacttgaggg cgaggtcgcg gttatcgtac atggagaagc ccgtgacggc
     2401 gatgaggggg acgctctcgt agccgggcag cgcgcgcagg gcctcggcga gctggtagcc
     2461 gttcatgcct ggcatgccta tgtcggagat taccacgtcg aagcggctcg cgcgcgcggc
     2521 gtcgaaggcg gagggtgccg agaaggccgt cgtcacctcg tagccggcga atcgcatgag
     2581 catcgcgacc atctcggtca cgtccggcgc gtcgtcaacg acgagcgcga gcggcttgcc
     2641 atcgcgcggc ttcacccccg cgccaagctc gggcgccgcg gagggcggcg caggcgactg
     2701 ctcggtcgtg aagagcgctg gcgacaagac cgggggcgtg cggggcggcg cgggtcggta
     2761 gggggctgta tgaagcatct gttttgagtc ggggcaagtc tgtcagtcgt gggccgcgcg
     2821 ccgcttgagc agttgctcga cctccgcggc gagcgccgaa gggtcaaccg gcttcgggac
     2881 gtgggcgtcg aagcctgcgg cggccgccgc ctcggcgtcc ttcggcgcgg cgtagccggt
     2941 gagcgcgacc gcgggagtgt cgcgcaggtg cgcgagggtg cgcagccgcc ttatcagttc
     3001 gtagccgtca attccaggga gcccgatgtc ggaaacgatt atatcaaagt gcgaggaggc
     3061 ggcaacgcgc acggcctctt cggcgtcggc gcaagcctct atctcgtagc cgcgcgactc
     3121 gaagacgacg cgcaggagct ccagcgtgtc gtgcgcgtca tctacgacga ggacgcggca
     3181 ggcgctctcc gcgcagggct cggccgaggg ctcggccgct agctcgccgg agccgtcgcc
     3241 gtccgagggc gccggcagca cgggcagcga gacggagaag cggctgccgg cgccggggcc
     3301 ggggctcgcg gccgacacgc ggccgccgtg cgcctccacg aagctcttga cgagcgcgag
     3361 cccgatgcct aagccgccgt gcgcgcgggt cgtggagccg tcggcctgcc tgaatcgctc
     3421 gaagacgtga gggaggaact cgggcgcgat gccctgcccg tcgtcggcca cctcgaccgt
     3481 cgcctgcccg tcgcgcgccg cgacgcttac gcgcacgagc ccgcccgcgc gcgagaattt
     3541 gacggcgttg ttcagaaggt tccagaagac ctgcacgagc cgcgtgcggt cgcccgagac
     3601 gttgaccggg ccgagcccgc ccgtagagac ttcgagcccg accgagcgcg cctcggcctg
     3661 tgggcgcacc gtctcggccg cctcgcgcac gacggcgcgc aggttaacgg gcgcgcggtc
     3721 tatcttcatc ttgccgctca gtatcgagga catgtcgagc aggtcgttga tgaggcgcga
     3781 gagcgcctgc gcgttcttgt ctatgacgcg gaggccctgc tcgacctccc gctccgaaag
     3841 tcggcccgag cggatcatgt gcgtccagcc tatgacgggc gtgagcggcg tgcgcagctc
     3901 gtgcgagagc atggcgagga actcgtcctt cgagcggttc acctcctgcg agcggccgta
     3961 gagtcgcgcg ttgtccatcg cgagcgcggc gcggcgcgct ataagctcgg cgaaggtcac
     4021 gtcggcgggg gcgtagggtc gcgcctcgcc cgtctgtgcg aaggtgagcg cgccgatggt
     4081 ccggccgcgg ctgatgaggg ggacgatgac gaaggacgcc aggccgagac gttcgagcag
     4141 ctcgcggtgc tcttggccgc gcacgagggc gtcgaggcgc tcgggcgtga ttggctgcac
     4201 aagctccgtc ttgcccgtgc gcaggacttt ggggacgccc tccgcccgcg cggggtcggg
     4261 cgggaagcgc cgaagctcgc gcacgagccc ttccttctcg gggtctgcgt gcgccgtcgc
     4321 tacacggcga atcagtccgt cgtcctcgac cacgtctatc aggcagtagt cggccatcgc
     4381 gcgcacggcg atgcgcgcga ggtgttcgag cgtcgtctcg tagtcgagcg acgacgcgag
     4441 aatctcgccg gcctcggcga ggaagcgcag gcgctcctcg gccgccttct ggtcgtgtat
     4501 gtcggtcgcg gtgccgaacc acttgacgac acggccctcg gagtcgagcg cggggactgc
     4561 gcgcccgagg tgccagcggt actgtccgtc ggaggcgcgg cggaagcggt actcgattga
     4621 gtagggcttg ctcgtctcga cggccgtggc ccagcggcgc agagacctct cggcgtcgtc
     4681 cgggtggagc gcgggctgcc agccccagcc gcgcgtctgc tcgggcgtct ggcccgtgta
     4741 ctcgaaccag cgcctgttga agtagtcggt gtggccgtcg ggccgggccg tccagactat
     4801 ctgcggcatg gcgtcggcga gcgagcggaa gcgctcctcg ctctcgcgca ggcccgcctc
     4861 ggccgcgacg cggcccgaga tgtccatggt cacgccgcgc atgccggcgg gcctgccgcg
     4921 ctcgtcgagt atgacgacgg attgcgcctc gacgtgtatg gcgcggccat ccttcgtcac
     4981 ccagcggaag cggctcgcgc cgcccgcgcc gctctcgaag atggcgtgcg cctcttgggc
     5041 ggcgcgctcc ctgtcgtccg ggtggactat ccggagccag aagttgggcg tcgagagcca
     5101 ctccccgacc gtgtagccca gcatcctctc gacgtagccg ctcacgaagt tgatgcgctg
     5161 ggccgaggcg tccggctccc cccacgcctc ccacaccacg ccggggacgc tcgccaccag
     5221 gctctcgagc ctcctgcgct cggcctccac ctgcgcggag agccgcgcag tctcctcttc
     5281 tgcgcgcctg cgctcggtga tgtcccggaa gacgaggacg acgcccgccg tcgcgcccga
     5341 ggcgtcaagg atgggggcgc cgctgtcgtc aatcggcgtc tcgcggccgt cgcgcgctat
     5401 cagcaccgtg tggttggcga gcccgacgac cgcgccctcg cgcagaacct tctcgacggg
     5461 gctctcgacc ggctcgcgcg tgctctcgtt gacgatgcgg aagacttccg tgacgggcct
     5521 gccctcggcc ccctcgaacg gccagccggt gaggcgcgcc gccacgtcgt tcatgaaggt
     5581 cacgcgcccg gcggcgtcgg tggctatgac ggcgtcgcct atgctcctga gcgtcgttgc
     5641 gagggattcg cggctggctc gctcgcccgc ctcggcgtcg cgcgtgcggt gggtcagata
     5701 gaccagcagc gcggcgacga agaagaagag cgccgtctgc gccaactcct ccgccgagag
     5761 cgagagctcg taggtcggcc cgaggaagaa gtagttgccc acgagggcag agagggcgag
     5821 cgcgagcagc gccggagcgc ggccgccgta gagcgccgtg acgagcacgg cagggaagaa
     5881 gaagatgaag acgatgcgga cgccttcggg gccgacgagg gacttgaggg cgaaggtcag
     5941 gagcgtggcg gccgcgaccg aggcgagcgc aagcccgtag cgcgcccacc acgcgggggc
     6001 gcggcgccag gcgcccgcgt cgtgcggccc gagtcgtgcg cggttcgcgg gcggggggtt
     6061 caactggggg ttcggcatcg ctcttcgcac gcccgcgggg cgagcggcgc gccctcctcc
     6121 ttcgccttgc aggttgttgg gccgaatggg gtgagccggc taaggggcgg ccggggcgca
     6181 cgcccgcgcg cggccccggc cggcgtgtaa actcacccgc ccgaagtgtc aaaggattaa
     6241 gttgtcagtc cgaatgtccc gccggaaaaa actacttctt tcgacatgac aagtcaagac
     6301 ggcctttggt aaaacagttg gcggttttcc ccgaacagtt tacagccatg tacccggccg
     6361 ggaacctttt cataccggcg ccgcacgggc gcctcgaagc catactgaag gagccgcgcg
     6421 cgggtggccg gccgcgcggc gccgcgctcg tgctgcaccc gcacccgctg cacggcggga
     6481 cgatgcacaa caaggtggtc ttccgaacgg ctcgggggct ggaggacgcc gggctcgtga
     6541 cgctgcgcgt gaacttccgg ggcgtcggcc agtcaacagg cgagcacgac caggcgcgcg
     6601 gaggcgagca ggaggacgca cggctcggcc tcgactacct cgacgaaaac taccgcggcc
     6661 tccccgtctt cctcgccggc ttctccttcg gcgcgcgcgt cgggctcgaa gtcggcataa
     6721 aagacccgcg cgtcgggttc ctcgtcggcg tcggcacgcc gctcggcatg gagggacgcg
     6781 actacgactt ctccttcctc gacaaatgcc gcaagccgct cctcctagtc cacggcgagc
     6841 aagacgagtt cggtaaagcc tccgacgtgc gcgcgctcgc ctcgcgcctc gcgcaggaat
     6901 gcgaagcccg cgccgagata atccccggcg cgggccactt cttcgaccga cagctcgaag
     6961 acctccgccg cgtcgtcgca gcatgggccg ccgagatgct cgggcgcgcc gggcggtagc
     7021 ggcgccctcc cctacggccg ggcctccgcc tcttcgtaga ggcggtcaat cacgtccttg
     7081 tacttttcgt ctatgacgcg gtgcttgacc ttgagcgagg gcgtcagctc gcctccgtca
     7141 atcgtcaact cgcgctcgat gatggcgacg cgcttgacgc gctcgaagcg ggagaggtct
     7201 gaggtgagcg agtcaacctg ccgctgcaag aggtcgagga cgcgcgggtg gcggcagaac
     7261 tcggcctgcg tctttatgtc gagccccttg tgctgcgcgt aggagcggag catctcccag
     7321 ttcggcacga tgagcgcggc cgggaacttt cggccgttgc cgacgagcac gacttggttg
     7381 acgaagcgcg actctttgat gcgctgttcg atgggctgcg gggcgacgta cttgccgccc
     7441 gaggtcttaa acagctcctt cttgcgatca atgatgctca agtacccttc cgcgtggagc
     7501 gtgccgatgt cgccggtctt gaaccaaccg tcgtccgtga agacctcgcg cgtcgcctcc
     7561 ggcttgttgt agtagccgag catgacgttc gggccgcgcg tctcgacctc gccgtccgag
     7621 gccagccgca cctcgacgtt ccgtatcggg cggccgacgg tgccgatgcg gttatcctcg
     7681 tcgggcgagt tgacgcagat gacgggcgac gtctccgtca gcccgtagcc ctgaacgacg
     7741 gggagccccg ctccgttgaa tatgtggccc aactcttcgg ggagcgccgc gccgcccgag
     7801 cagaacaggc gtatgcgccc gcccgtcgcc tcgcgccact tcgagaagac gaggcgcgag
     7861 gcgagcctgt actgaagcgc gagcagcggt ggcacgggcc gtttctgaac gcggaggcgt
     7921 gaccagcgct tagccacgcc gacagaccag gcgagcagtg ccgtcttgac gcgcccgccc
     7981 tcggccgcct tgtccttgat gcgcgcgtag attttctcga acagtcgcgg gacggcgatg
     8041 acgagcgtgg ggcgcacttc gcgcatgttg tcgcctatgc gctccagcga ctcggcgaag
     8101 aagactcgcg cgccgtggtg tatgtacatg tacatcgcgc cgcgctcgaa tatgtgagag
     8161 agcggcagca cagagagcgc aacgtcctcg gggttgaagg ccaggcggtc tgaagtgtct
     8221 attaggttcg agacgacgtt ggagtgagtg agcatcacgc ctttgggctc gccagtcgtc
     8281 cccgaagtgt agattatcgt cgcgtggtcg tcgggctcga ccgcgccggc aagctcttcc
     8341 gcgagcccgg gcctctccgc gtcgagcgcc tcgccgcgcc tctcaagctc ggcgagcgtg
     8401 atgacgcccg cctcttcgcc gccctcgccc gtcatcaaaa cgacctgcct gagcgcggcg
     8461 cactccgcga gcgcgcccct cacgcgctcg taagcctcgc ggtgctgcgc gaagaggact
     8521 gacgagcccg agtcgtccat gatgtagcgg acctggttcg gcgcaagcgt cgggtagatg
     8581 gggacgtcca ccacccctgc cgactggcag cccacgtcca cgagcaccca ctcgggcgaa
     8641 ctctccgaga tgatggccgc gcggtcgccg cgccgcaagc ccgaagcgta gaggccgagg
     8701 gcgattgcac gcgagcggcg cgctaactct tcagaggaga cagcccgcca ctcgccgccg
     8761 tgcttgctgt tgagcgtgtc tgggcgcgcg tgcttgcgca gcgccctcgc gaccgcctcg
     8821 accagcgtgc cgggctcgcc ctggtgcagg ggtacgcgct cggggcctgc ggccggcgac
     8881 ctgcgcggca acccggtccc gactttgtcc cgcgtcgtct ccatcatcgc gcggcgctca
     8941 ccccgttgaa
//
LOCUS       DASPKR010000263         2024 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_291454, whole genome shotgun sequence.
ACCESSION   DASPKR010000263 DASPKR010000000
VERSION     DASPKR010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2024)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291454"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..840
                     /locus_tag="VD968_07355"
     CDS             <1..840
                     /locus_tag="VD968_07355"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE14238.1"
                     /translation="IPETLMESELFGHERGAFTGAATRRLGCFELANGGTLLLDEISE
                     MPFSLQAKLLRVLEDRKIRRLGGSGELPVDARVLAATNRDPTEAVRRGSFREDLLYRL
                     NVITIDLPPLRRRKEDIPLLAQHLATQLAERHNRPARFLSPAAVEALQSHSWPGNVRE
                     LRNVVERAVIICSGDCIERHHLAPYPLDQRQRAREQDTITLPVGTPIEEVERRMIMRT
                     LQKTENNKTRAAELLQISLKTLHNKLRLYREQGLLPDGEEARAPVHSGPHNRRESDRT
                     DLT"
     gene            complement(846..>2024)
                     /locus_tag="VD968_07360"
     CDS             complement(846..>2024)
                     /locus_tag="VD968_07360"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HYE14239.1"
                     /translation="EKLEVFEQGWEYMRDNFYDPGYHGVDWARKRGEYLPFVAGARTP
                     DEVRRLMRLMVGELNASHLGVSAPQGSAVTATGRLGLDFDREEYERSGRLRVSEVVPL
                     GPAALARDAANTDRTRPVRAGDYVVAVDGRTVDARTNLDELLSYKTGRRVALTVASSP
                     EGADKRELDVRPVSVATEKGLRYLKWVDEKRAYVTRASGGRLGYVHMYDMSSASLAQL
                     HVDLDAENQSREGVVVDIRHNDGGFVNVYAIDVLARRSYLRMTPRGLATSPARTVLGQ
                     RALELPTVLVTDQYSLSDAEDFTEGYRSLRLGKVVGEPTSGWIIFTSNVPLIDGSVFR
                     LPFVRIETAGGENMERNPRPVDVPVRRPFGESYTGRDSQLDAAVRELLGPTGPRAGNP
                     "
BASE COUNT          333 a          741 c          646 g          304 t
ORIGIN      
        1 atcccggaga cgctcatgga gtcggagctg ttcggccacg agcgcggcgc cttcacgggc
       61 gcggccacgc gccgcctcgg ctgcttcgag cttgctaacg gcggcacgct cctgctcgac
      121 gaaatttcgg agatgccctt ctcgcttcag gcgaagctcc tgcgcgttct tgaagacagg
      181 aagataagga ggctgggcgg ctccggcgag ctgccagttg acgcgcgcgt gctcgcggcg
      241 accaaccgcg acccgacaga ggccgtgcgc cgcggcagct tccgcgaaga cctgctctac
      301 cgcctgaacg tcatcacgat tgacctgccg ccgctcaggc gccgcaagga ggacataccg
      361 ctcctcgcgc agcacctcgc gacgcagctc gccgagcggc acaaccggcc cgcgcgcttc
      421 ctctcccccg cggccgtcga ggccttgcag tcgcacagtt ggcccggcaa cgtccgcgag
      481 cttcgcaacg tcgtcgagcg cgccgtcatc atctgctcgg gcgactgcat agagcgccac
      541 cacctagcgc cctacccgct cgaccagcgg cagcgcgcgc gcgagcagga cacgataacg
      601 ctgcccgtcg gcacccccat cgaggaggtc gagcggcgca tgataatgcg cacgctacag
      661 aagaccgaga acaacaagac gcgcgccgcc gagctgctac agataagcct gaagaccttg
      721 cacaacaagc tgcgcctcta ccgcgagcag ggccttctgc ccgacgggga agaggcgcgc
      781 gcgcccgtcc actccggccc gcacaaccgc cgcgagtccg accgcaccga cctgacttaa
      841 cgcctttaag gattgccggc gcgcggcccc gtcggcccga gcagctcgcg cacggcggcg
      901 tccagctgcg agtcgcgccc cgtgtagctc tctccgaagg ggcggcgcac gggaacgtca
      961 acgggtcgcg ggttgcgctc catgttctcg ccgccggccg tctcgatgcg cacgaacgga
     1021 aggcggaaca cgctgccgtc tatgagcggc acgttgctcg tgaagattat ccagcccgac
     1081 gttggctcgc ccaccacctt acccagccgc aggctcctgt acccttccgt gaagtcctcc
     1141 gcgtccgaga gtgagtactg gtcggtgacg agcacggtcg ggagttcgag agcgcgctgg
     1201 ccgagcaccg tgcgcgcggg cgaggtcgcc agcccccgcg gcgtcattcg caggtagctg
     1261 cgccgggcca gtacgtcaat cgcatagacg ttgacgaagc cgccgtcgtt gtggcgtatg
     1321 tccacgacga cgccctcgcg cgactggttc tctgcgtcaa ggtcaacgtg gagctgcgcg
     1381 agcgacgccg aagacatgtc gtacatgtgc acgtagccga ggcggccgcc gctcgcgcgc
     1441 gtcacgtagg cgcgtttttc gtcaacccac ttcaggtagc gcaggccctt ctccgtcgcg
     1501 acgctcaccg gcctcacgtc cagctcgcgt ttgtcggcgc cctccggcga ggatgcgacc
     1561 gtgagcgcga cgcggcggcc cgtcttgtaa gagagcagct cgtcgaggtt agtgcgcgcg
     1621 tcaaccgtgc gcccgtccac agccacgacg taatcgcccg cgcggactgg tcgcgtgcgg
     1681 tcggtgttag cggcgtcgcg cgcgagcgcg gccgggccga gcgggacgac ttccgagacg
     1741 cgcaggcggc ccgacctctc gtactcctcg cggtcgaagt ctaggcccag cctccccgtc
     1801 gccgtcaccg cagagccctg cggcgccgac acgcccaggt gcgaggcgtt caactcaccg
     1861 accattaacc gcatcagccg ccgcacctca tccggcgtgc gagcgcccgc gacgaacggc
     1921 aggtactcgc cgcgcttgcg agcccagtca acgccgtgat acccggggtc gtagaagttg
     1981 tcgcgcatgt actcccagcc ctgctcgaag acctctaact tctc
//
LOCUS       DASPKR010000264         2246 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1068864, whole genome shotgun sequence.
ACCESSION   DASPKR010000264 DASPKR010000000
VERSION     DASPKR010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2246)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1068864"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..632)
                     /locus_tag="VD968_07365"
     CDS             complement(<1..632)
                     /locus_tag="VD968_07365"
                     /inference="COORDINATES: protein motif:HMM:NF012336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase N-terminal-like
                     domain-containing protein"
                     /protein_id="HYE14240.1"
                     /translation="MRDAIIVSAVRTAVGKAPKGALRETRPDEMGAAVIEEAIRRAEG
                     LDKTEVEDVIMGCAMPEAEQGMNVARAAAIRAGLPVETSAMTINRFCSSGLQSIAIAA
                     DRIRSGAAEVMVAGGLETMSMIPMGGHHIRPNPYLVEHYPDFYLNMGLATENVARKYE
                     VSREEQDAFALQSHRRAAAAQDAGKFDDEIVPLKVTFEELDGRGRKKAREV"
     gene            complement(673..1158)
                     /gene="ybaK"
                     /locus_tag="VD968_07370"
     CDS             complement(673..1158)
                     /gene="ybaK"
                     /locus_tag="VD968_07370"
                     /inference="COORDINATES: protein motif:HMM:TIGR00011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HYE14241.1"
                     /translation="MSYPVTPAVRLLREKKVEFEPHLYDYVQGGGTRHSAESLGVDEH
                     AVVKTLVMETDAKKPLIVLMHGDREVSTKSLARHLGVKSVHPCDFAQAQKHTGYVVGG
                     TSPFGARAQMPIYAERTIFELPKIYINGGKRGFLVSIDPKVLKEVLHAAEVEVAVEKG
                     A"
     gene            complement(1163..1756)
                     /locus_tag="VD968_07375"
     CDS             complement(1163..1756)
                     /locus_tag="VD968_07375"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HYE14242.1"
                     /translation="MSAGVATANGVKKGELTVLVEELGVITTEAREVFGGLSARQLNW
                     KPSAEQWSVGQCFDHLIKTNRCFFPDMERIAAGEHRPSLWGRVSPLSGFFGRMILRAL
                     DPEKGRRTKAPHVFEPASSDVGPDIIRQFAAHQEELASRMRATAGRDLARVIVTSPVS
                     PVATYSLLDAYRIVVAHERKHFEQARRVTRTEGFPQS"
     gene            complement(1775..>2246)
                     /locus_tag="VD968_07380"
     CDS             complement(1775..>2246)
                     /locus_tag="VD968_07380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14243.1"
                     /translation="PFPFVKRAFETIALAKVATSAEEAKQYGFLRDEDSYSMNADRLI
                     ADAKQEVLALASVGYTQAPQRTDVLALGNSALATLKLGIHQMKRGGFISDYDALIGEK
                     LAKVLTGGDLNHETRVPEQYLLDLEREAFLSLCGHRQTQERIAHMLKTGKPLRN"
BASE COUNT          329 a          752 c          737 g          428 t
ORIGIN      
        1 acctcgcgcg ccttcttcct gccgcgcccg tcgagctcct cgaatgtgac ctttagcggg
       61 acgatctcgt cgtcgaactt gccggcgtcc tgcgcggcgg cggcgcgccg gtgcgactgc
      121 aaggcgaagg cgtcctgctc ctcgcgcgag acctcgtact tgcgcgcgac gttctcggtc
      181 gcgagcccca tgttgaggta gaagtccggg tagtgctcga cgaggtaggg gttgggccgg
      241 atatggtggc cgcccatcgg tatcattgac atcgtctcga ggccgcccgc gaccatcact
      301 tcggcggcgc ccgagcgtat gcggtcggcg gcgattgcga tggactgaag gccggaggag
      361 cagaagcggt tgatggtcat cgcgctagtc tcgacgggga ggccggcgcg tatggccgct
      421 gcgcgcgcga cgttcatgcc ctgctcggcc tccggcatcg cgcagcccat tatcacgtcc
      481 tcgacttctg tcttatccaa gccctcggcg cgcctgatgg cctcttcaat cacggccgcg
      541 cccatctcgt ccggccgcgt ctcgcgcaga gcccccttcg gtgccttccc gaccgccgtg
      601 cgcacggcgg aaacgatgat tgcgtctctc ataaatgacc tctcgttaaa aaccgcgcgc
      661 ttcatagacg tctcacgcgc ccttctcgac ggcgacttcc acctccgcgg cgtgtaagac
      721 ttccttcaag accttcgggt caatcgagac gaggaagccg cgcttgccgc cgttgatgta
      781 aatcttcggc agctcgaaaa tcgtgcgctc ggcgtagatc ggcatctgcg cgcgcgcgcc
      841 gaaggggctc gtgccgccga ccacatagcc cgtgtgcttc tgcgcctgcg cgaagtcgca
      901 cgggtggacg ctcttcacgc cgaggtggcg cgcgaggctc ttcgtcgaga cctcccggtc
      961 gccgtgcatc aggactatca ggggcttctt cgcgtccgtc tccatcacga gcgtcttgac
     1021 gaccgcgtgc tcgtcaacgc cgagcgattc tgccgagtgg cgcgtgccgc cgccctgtac
     1081 gtaatcgtag aggtgcggct cgaactcgac cttcttctcg cgcagcagcc tcacggccgg
     1141 cgtcacgggg tagctcatag ctttaagatt gcgggaagcc ttccgtccgg gtcacgcgcc
     1201 gcgcctgctc gaagtgcttg cgctcgtgcg cgacgacgat gcggtaggcg tcgagcaggc
     1261 tgtaggtggc gacgggcgag accggcgacg tgacgattac gcgcgcgagg tcgcggcccg
     1321 cggtggcgcg catgcgcgag gccagctcct cctggtgtgc ggcgaattgc ctgatgatgt
     1381 ctggcccgac gtcgctcgac gcaggctcga agacgtgcgg cgccttcgtc ctcctgccct
     1441 tctcggggtc gagcgcgcgc agaatcatgc ggccgaagaa gcccgagagc ggcgagacgc
     1501 gcccccagag gctcggcctg tgctcgcccg ccgctatcct ctccatgtcg gggaagaagc
     1561 agcggttggt cttaatcaag tggtcgaagc actggccgac gctccactgt tcggccgacg
     1621 gcttccagtt tagctgccgc gcggagagcc cgccgaacac ttcgcgcgcc tccgtcgtga
     1681 ttacgcccag ctcttcgacg agcacggtta gctcgccctt cttaacgccg ttggccgtcg
     1741 cgacgccagc gctcataaca accctccccc gccttcagtt ccggagcggc ttgccggtct
     1801 tgagcatgtg cgctatgcgc tcctgcgtct ggcggtggcc gcacaggctc aggaacgcct
     1861 cgcgctcgag gtctaagagg tactgctcgg ggacgcgcgt ctcgtggttg aggtcgccgc
     1921 ccgtcaacac cttagccagc ttctcgccga ttagcgcgtc gtagtcggag atgaagccgc
     1981 cgcgcttcat ctggtgtatg ccgagcttta gcgtcgcgag cgcggagttc cccagcgcga
     2041 gcacgtccgt gcgctgcggg gcttgcgtgt agcctacgga ggcgagcgcg agcacctcct
     2101 gcttagcgtc ggcgatgagg cggtcggcgt tcatcgagta ggagtcctca tcgcggagga
     2161 agccgtactg cttcgcctcc tcggccgagg tcgcgacctt cgcgagcgcg atggtctcga
     2221 aggcgcgctt gacgaagggg aaaggg
//
LOCUS       DASPKR010000265         2808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_810402, whole genome shotgun sequence.
ACCESSION   DASPKR010000265 DASPKR010000000
VERSION     DASPKR010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2808)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_810402"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..317)
                     /locus_tag="VD968_07385"
     CDS             complement(<1..317)
                     /locus_tag="VD968_07385"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE14244.1"
                     /translation="MSGTILIKGGSLVTMGAAGVVARGDLFVRDGRIAAVGGEVGEAA
                     DLVIDARGCAVLPGFVQTHVHLCQTLFRGSADDLELLDWLRKRVWPMEAAHDAASIRA
                     SARL"
     gene            complement(468..1541)
                     /gene="recA"
                     /locus_tag="VD968_07390"
     CDS             complement(468..1541)
                     /gene="recA"
                     /locus_tag="VD968_07390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HYE14245.1"
                     /translation="MADSKAGADRGKAVEAALLNIEKKFGKGSIMRLGEREVVDIPAI
                     STTSLSLDAAMGVGGVPRGRIIEIFGPESSGKTTLALHIVAEAQKAGGVAAYIDAEHA
                     MDAEYAGKLGVNVDELLISQPDSGEQALEIAEALVRSNGVDVIVIDSVAALVPRAELD
                     GEMGDSLPGLQARLMSQALRKLTAIVGQTNTSLIFINQIREKIGVMFGSPETTTGGRA
                     LKFYSSLRVDIRRIGAIKDGDRFVGNRTKVKIVKNKVAPPFRECEFDIVYGEGISREG
                     DVLDLAVAHRIVEKSGAWFSYSGERLGQGRENAKQTLKDNPEMLRRVENDVRKALGIP
                     SLGGGAEEETAPAKAEAKADGKK"
     gene            complement(1767..2552)
                     /gene="trpA"
                     /locus_tag="VD968_07395"
     CDS             complement(1767..2552)
                     /gene="trpA"
                     /locus_tag="VD968_07395"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HYE14246.1"
                     /translation="MSRIAETFARLKADGRRGFIPFLTAGDPDLETTRALIVELARAG
                     STVIELGVPFSDPVADGPVIQRASERALRRGVGVGDALEMVAGVRKETSVPVVLFSYF
                     NPLMQYGAARLAADASRAGVDGVLVTDLVPEESEGFSAALALHGLDQIFLAAPTTTDE
                     RLRMIAAQAKGFLYAVSRAGVTGARTDLSADAARLVSRVREVTPLPVAVGFGISTPEQ
                     VAEVWRYADAAVVGSALVSEIEKCAGRTDLVARVGAFARSLIP"
     gene            complement(2549..>2808)
                     /locus_tag="VD968_07400"
     CDS             complement(2549..>2808)
                     /locus_tag="VD968_07400"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="catalyzes the formation of L-tryptophan from
                     L-serine and 1-(indol-3-yl)glycerol 3-phosphate; Derived
                     by automated computational analysis using gene prediction
                     method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HYE14247.1"
                     /translation="PEHAHLHDSGRAHYVSATDDEALEAFSALSRLEGIIPALESAHA
                     VAYALKLAREMKRGQIVLVNLSGRGDKDVQTVAERAGEGAE"
BASE COUNT          429 a          921 c          986 g          472 t
ORIGIN      
        1 agccgtgcgg aggcgcgtat ggaggcggcg tcgtgcgcgg cctccatcgg ccagacgcgc
       61 ttcctgagcc agtcgaggag ctcgaggtcg tcggccgagc cgcggaagag cgtctggcag
      121 aggtgtacgt gcgtctgcac gaagccgggc agcacagcgc agccgcgcgc gtcgatcacg
      181 aggtcggccg cctcgccgac ctcgccgccg acagcggcga tacgcccgtc gcgcacgaac
      241 aggtcgccgc gcgcgaccac gcccgccgcc cccatcgtga cgagcgaccc gccctttatg
      301 aggatggttc ccgacatagc cgcgagatta tgcgcgcgcg cgcgcgcggc tgtaaagaag
      361 ataaaccggg agcggttgcg gccgggtgag acttacgaac ggcgtggatg ccttcgtaac
      421 cctcacccgg ccgctaccgc tcccggttct gaaattgtgc cctgcgctta cttcttgccg
      481 tcggcctttg cctcggcctt cgcgggcgcg gtctcctcct cagcgccgcc gccgagcgag
      541 gggatgccga gcgccttgcg cacgtcgttc tcgacgcggc gcagcatctc ggggttgtcc
      601 ttcagggtct gcttggcgtt ctcgcggccc tggcccaggc gctcgcccga gtaggagaac
      661 cacgcgcccg acttctcgac gatgcggtgc gcgacggcca ggtcgagcac gtcgccctcg
      721 cgcgagatgc cctcgccata gacgatgtcg aactcgcact cgcggaaggg cggcgccacc
      781 ttgttcttga ctatcttgac cttcgtgcgg ttgccgacga agcggtcgcc gtccttaatc
      841 gcgccgatgc ggcgtatgtc aacgcgcagg ctggagtaga acttgagcgc gcgcccgccc
      901 gtcgtcgtct cggggcttcc gaacatgacg ccgatcttct cgcgaatctg gttgatgaag
      961 atgaggctgg tgttcgtctg gccgacgatg gccgtgagct tcctcagagc ctgcgacatg
     1021 agccgcgcct gaaggccggg cagcgagtcg cccatctcgc cgtcgagctc ggcgcgcggc
     1081 acgagcgccg ccaccgagtc aatgacgatg acatccacgc cgttcgagcg cacgagcgcc
     1141 tcggctatct cgagagcctg ctcgcccgag tcgggctgcg agatgagcag ctcgtcaacg
     1201 ttgacgccga gcttgccggc gtactcggcg tccatcgcgt gctcggcgtc aatgtaggcg
     1261 gcgacgccgc ccgccttctg cgcctcggcc acgatgtgga gcgcgagcgt ggtcttcccc
     1321 gacgactcgg gcccgaagat ttcgatgatg cggccgcgcg gcacgccgcc gacgcccatc
     1381 gcggcgtcga gcgagagcga cgtggtcgag atcgccggga tgtcaacgac ctcgcgctcg
     1441 ccgagccgca tgatagagcc cttgccgaac ttcttttcga tattcaggag cgcggcctca
     1501 acagccttgc cgcggtccgc gcctgctttg ctatctgcca tcgttgctat cactctttct
     1561 cgtccccttt tctcacgctt ttaaagtctg tgccgtccga aagactcgga gagtgtagca
     1621 caaacggcgc gagaatggaa cagtgtttca cgcctgcaac aaaatatttt ttcgccttgc
     1681 aggtctgggt ggggtgattt cgcaaggccg ggccaatata cgccagccgg ccccgcaagt
     1741 cgagtgagcc tgcgccggag cccgatttaa gggatgagcg agcgggcgaa ggcaccgacg
     1801 cgggcgacga ggtctgtgcg gccggcgcat ttttcgattt cagagacgag ggcggagccc
     1861 acgacggccg cgtcggcgta gcgccagact tcggcgacct gctcgggcgt tgagatgccg
     1921 aagcctacgg cgacgggcaa gggggtgact tcgcgcacgc gcgagaccag gcgggcggcg
     1981 tcggcgctca ggtctgtgcg cgcgcccgtg acgcccgcgc gcgagactgc gtagaggaag
     2041 cctttggcct gcgcggctat catgcggaga cgctcgtctg tcgtagtcgg tgcggcgagg
     2101 aaaatctggt cgagcccgtg gagggcgagc gcggccgaga agccctcaga ttcttccggc
     2161 acgaggtcag tcacgagcac gccgtcaacg cccgcgcggc tcgcgtccgc tgcgagccgc
     2221 gcggcgccgt attgcatgag cgggttgaag tagctgaaga ggacgacggg gacgctggtt
     2281 tccttgcgca cgcccgcgac catttcgagg gcgtcgccga cgccgacgcc gcggcgcagg
     2341 gcgcgctcgc tggcgcgctg tatgacgggg ccgtcggcga cggggtcgct gaaggggacg
     2401 ccgagctcta tgacggtcga gccggcgcgc gcgagctcga cgatgagggc gcgggtggtt
     2461 tcgaggtcgg ggtcgccagc ggtcaggaaa gggatgaagc cgcggcgccc gtcggccttc
     2521 aggcgcgcga aagtctccgc gatgcggctc actccgcgcc ctcgccagcc cgctcggcca
     2581 cggtctgcac gtccttgtcg ccgcgccccg aaaggttgac gaggacgatc tggccgcgct
     2641 tcatctctcg cgcgagcttg agcgcgtagg cgaccgcgtg ggccgattcg agcgcgggga
     2701 tgatgccttc gagccgggag agagcgctga aggcttcgag cgcctcgtcg tcggtggccg
     2761 agacgtaatg ggcgcggcca gagtcgtgaa ggtgcgcgtg ctcggggc
//
LOCUS       DASPKR010000266         7667 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_33781, whole genome shotgun sequence.
ACCESSION   DASPKR010000266 DASPKR010000000
VERSION     DASPKR010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7667)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7667
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33781"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..807)
                     /locus_tag="VD968_07405"
     CDS             complement(<1..807)
                     /locus_tag="VD968_07405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14248.1"
                     /translation="MSLLFAATLFLSAVLLFWSQPLVGKMVLPLLGGTPAVWNTCMLF
                     FQAALLAGYAYVLAVTRWLGPRGQAVLHAALLAAAALALPFGVSETTAGGVPSEGSPV
                     GWLLASLALTVGPPFFVLSASAPLLQNWYSRTRARSAGDPYFLYAASNAGSLAALLGF
                     PLLFEPALTLGRQGRLWAAGYFVLGALVVACAFVSLAKGRRAAAGEGVDAEGEVDEGA
                     AGLTRRRRLRWVALAFVPSSLVLGATTYITIPESASRSFFRSGTSMNWLAE"
     gene            complement(874..3138)
                     /locus_tag="VD968_07410"
     CDS             complement(874..3138)
                     /locus_tag="VD968_07410"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE14249.1"
                     /translation="MRNIISLALALSLSPAAALSQSGTPAQRQQQQQSVAPSPTPTPT
                     PQVDDDDVVRITSNLVQFDAVVLDKKGQQVTDLRPEDFEVLVDGKQQTITNFSYVSTG
                     MPTTGGARAGAPPADKTLPPAPSAPLKAEQVRRTIALVVDDLGTSFESMHFVRSALRK
                     FVDEQMQPGDLVAIMRTSAGVGALQQFTSDKRMLYAAIERVRWYPRGRAGVAAFAALE
                     GDSPSVTRDPTMGAGGDDNSMGRASPADEIDEFREEIFSVGTLGALNYIVRGLKDLPG
                     RKSVVLFSDGFQIFRSDGTSGRVMEVLRRLVDLANRASVVVYTMDARGLPTLGLTAAD
                     STAGMTPMQISQALMSRSSTFFNSKTGLNYLAQETGGFFIHNNNDLSGGLRKVLDDQR
                     GYYLIGFRPDESIFDPARTRVRFNHLEVKVKRPGLKVRTRGGFYGFTEEEAVPVRRTR
                     REQILAALTSPFIRGEVPVRLTSLFTSDADPEATAKSRKPAYMSQVSTMMHIDVNDFK
                     FTEEPDGWRKMVMDVVAVTFGDNGVVVDSLNRTETVRVRGEMYDFLRRNGLVYVVKVP
                     VKKPGAYQLRVAVRDAETEKVGSASQFIEVPDLKKDRLALSGIVMMGTSPAGAQGQQQ
                     APQQQGAAAEGPSGGADPLSGPAVRRMRGGIPIEYYFDIYNAKLDRATGKPQLQTQTR
                     LFRDGKPVFTGSVNAYDPGSQTDMRRLHAGSRLQLGKDFPAGEYVLQVIVTDTLAKGK
                     HRMATQWIDFELVK"
     gene            3268..3705
                     /locus_tag="VD968_07415"
     CDS             3268..3705
                     /locus_tag="VD968_07415"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYE14250.1"
                     /translation="MPDRAKNGDIVRVHYTGRLEGGETFDSSRDGDPLEFRVGAGEVI
                     PGFDEAVRGMAEGESRTVEIEADDAYGQRREGLVAQVERASAEFPQEPQVGMNFILPL
                     EGGSQLEVVVTEVTPEHVTIDGNHPLAGKKLIFDVELVEISRE"
     gene            complement(3760..4254)
                     /locus_tag="VD968_07420"
     CDS             complement(3760..4254)
                     /locus_tag="VD968_07420"
                     /inference="COORDINATES: protein motif:HMM:NF017774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HYE14251.1"
                     /translation="MPYLVDGNNVMGQRVGWHKDRAGARRRLLSELVQFSRAAGARVE
                     VVFDGAPDDFFPDGSDFMGVRVHYSGRGSDADTRIKQLAESSRERRTLKVVTSDRALA
                     DYVRRLGVEVVRSGEFRRRLDDAAAAGGEDDERRPSVVRESETADWMYYFGVSEEDDE
                     QGSK"
     gene            complement(4264..5226)
                     /locus_tag="VD968_07425"
     CDS             complement(4264..5226)
                     /locus_tag="VD968_07425"
                     /inference="COORDINATES: protein motif:HMM:NF020279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HYE14252.1"
                     /translation="MNCLNCGGQLPAAVKFCPRCGTPTGQPVAQTPQPPPYVPPQQQE
                     IRTSWGVGPEQAPPSQPPGYAAQPRRKSRAGKILLIILGVLVMLGVGAGVAIYLGYRY
                     VESTMKSSEPYQMAEGELRRSEAARARLGDIKSTGFPVGTFKTEAGGGGFAGFTVSVE
                     GTKASGRYFVTMQREGGEWQILRAYVQMPGGEMVSVAGGDEPGAEAEEGTPAGPAPPP
                     PPAPAAPGGSKVISAGVLNGKAVSKPQPTYPPIAKAARAQGTVTVQVTVDESGKVISA
                     SAVSGHPLLQQAAVQAARQARFSPTLLSGKPVKVSGVLTYNFVL"
     gene            5532..>7667
                     /locus_tag="VD968_07430"
     CDS             5532..>7667
                     /locus_tag="VD968_07430"
                     /inference="COORDINATES: protein motif:HMM:NF028457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HYE14253.1"
                     /translation="MFPCKPSRLLRASSAALALQLTLLGAGLASGAHAATRRAPRAAA
                     KAGQQTPPQPSPSPQAPATGAAAPAASPAAPAQAPAGPGAPPPQAEKPFAEIIKDAEV
                     IKGLFTIYRKDEKVMMEIMPEQFDKIFLISPTMESGIGERGFLSAQVMQEFAFSLRRN
                     GKNVQLVAKNVNYRAGDKAAIRRAVDRSFADSVISSAKFESQPHPDRKSVLVDLSSFL
                     LTDLPLIGYALESVYRIPYRLDAKNSAFAGVKGFPDNVEIETLLNYSVERPPLAPLTP
                     SPVPMPRPPLAPPDLRGIQFRVRYSLSSIPQTAYRPRLADDRVGHFATIYQDYTDDRE
                     DTPYVRYINRWNLVKKDPSAALSEPVQPVVFWMENAIPEKYRKAVADGVLMWNRAFER
                     IGFKDAVQVKQQPDNSDWDPADVRFSTIRWFIATDAGFAIGPSRANPFTGEIYDADIS
                     FSEAMTRGVRSEFQEFVDPLANETQTNAMEVLHSLRGRFGTCNYANEAAREASFGYQM
                     LLTRGLVSKEEAEEQYVRDFLTHVTAHEVGHTLGLRHNFRASTLHPLDKLQDTALTNA
                     EGLTGSVMDYTPVNIAPNGAKQGQYWQTTLGTYDYWAIEYAYKPIAASSVEGERAELN
                     KIASRVAEAKLAYGTDEDVFGLDPIGIDPRTNRWDYAADPLPWYETRTKLVHELWDSL
                     EAKFAQPGKRYQKLRYAFNGGFNELSNAMM"
BASE COUNT         1268 a         2663 c         2561 g         1175 t
ORIGIN      
        1 ctcggccagc cagttcatag aagtccccga cctgaagaaa gaccggctcg cgctctcggg
       61 aatagtgatg taagtcgtcg cgccgagcac aaggctcgaa ggcacgaacg ctagcgccac
      121 ccagcgcagg cgcctccgcc gcgtgagccc cgcggcccct tcgtcaacct cgccctccgc
      181 gtcaactccc tccccggccg ccgcgcgccg gcccttcgcg agcgacacga aggcgcaggc
      241 gaccacgagc gcgccgagca caaaatagcc ggccgcccac aggcggccct gccggccgag
      301 cgtgagcgcc ggctcgaaga ggagcgggaa gccgaggagc gcggcgaggc tgccggcgtt
      361 gctcgccgcg tagaggaagt acgggtctcc ggccgagcgg gcgcgcgtgc gcgagtacca
      421 gttctgaagc agcggcgcgc tcgccgacag gacgaagaag ggcggcccga ccgtgagcgc
      481 caggctcgcg agcagccacc cgacggggct gccctcggaa ggcacgccgc ccgcggtggt
      541 ctcggagacg ccgaacggga gcgcgagcgc cgccgccgcg agcagcgccg cgtgcagcac
      601 ggcctgcccg cgcggcccga gccagcgcgt gaccgcgagc acgtaggcgt agcccgccag
      661 cagcgcggcc tggaagaaga gcatgcaggt gttccagacc gcgggcgtgc cgcccaagag
      721 cggcagcacc atcttgccca ccagcggctg agaccagaag agcagaaccg cgctcaggaa
      781 tagcgtcgcg gcgaagagga gggacatagc gtgaatggta aatggtaaat ggtgaatggc
      841 aaccgctttc atccattcac catttaccgt tcactatttg accagctcga agtctatcca
      901 ctgcgtcgcc atgcggtgct tgcccttggc gagcgtgtcg gtgacgatga cctgtaggac
      961 gtactcgccc gcggggaagt ctttgcccag ttgcaggcgc gagccggcgt gcagccgcct
     1021 catgtcggtc tgcgagccgg ggtcgtaggc gttgacgctg ccggtgaaga caggcttgcc
     1081 gtcgcggaac agccgcgtct gcgtctgcaa ctgcggcttg ccggtcgcgc ggtcgagctt
     1141 agcgttgtat atgtcgaagt aatattcgat gggtatgccg ccacgcatgc gccggacggc
     1201 cgggccgctc aaggggtctg ccccccccga aggcccctcg gcggcggcgc cctgctgctg
     1261 cggcgcctgc tgctggcctt gcgcccccgc cgggctcgtg cccatcatca ctattcccga
     1321 gagcgcgagc cggtctttct tcaggtcggg gacttctatg aactggctgg ccgagccgac
     1381 cttctcggtc tctgcgtcgc gcacggcgac gcgtagctgg taggcgcccg gcttcttgac
     1441 ggggactttc acgacataga cgagcccgtt gcggcgcagg aagtcgtaca tctcgccgcg
     1501 cacccgcacg gtctccgtgc ggttgagcga gtccaccacg acgccgttgt cgccgaaggt
     1561 gacggccacc acgtccatga ccatcttgcg ccatccgtcc ggctcctccg tgaacttaaa
     1621 gtcgttcacg tctatgtgca tcatcgtgct cacctggctc atgtaggcgg gcttgcgcga
     1681 cttggccgtg gcctcggggt cggcgtcgct cgtgaacagc gaggtgagcc ggacggggac
     1741 ttcaccgcgg atgaagggcg acgtgagggc cgcgagtatt tgctcgcggc gagtgcggcg
     1801 gacggggacg gcctcctcct ctgtgaagcc gtagaagccg ccgcgcgtgc gaacctttag
     1861 gccggggcgc ttgaccttga cttcgaggtg gttgaagcgc acgcgcgtgc gcgccgggtc
     1921 gaagatgctc tcgtcggggc ggaagcctat gaggtagtag ccgcgctggt cgtcgagcac
     1981 cttgcggagc ccgccagaga ggtcgttgtt gttgtgtatg aagaagccgc cggtctcctg
     2041 cgccaggtag ttcaggcccg tcttcgagtt gaagaaggtc gagctgcggc tcatgagcgc
     2101 ctgcgaaatc tgcatgggcg tcatgccggc cgtgctgtcg gccgccgtga ggccgagcgt
     2161 gggcaggccg cgcgcgtcca tcgtgtaaac gacgaccgag gcgcggttgg cgaggtcaac
     2221 gaggcggcgc agcacttcca tgacgcggcc gctcgtgccg tcgctgcgga aaatctggaa
     2281 gccgtcggag aagagcacga cggacttgcg gcccggcagg tctttgaggc cgcgcacgat
     2341 gtagttgagc gcgcccagcg tgccgaccga gaaaatctcc tcgcggaact cgtctatctc
     2401 gtcggccgga gaggcccggc ccatagagtt gtcgtcgccg cccgcgccca tcgtagggtc
     2461 gcgcgtgacc gagggcgagt cgccttcgag ggcggcgaag gcggcgacgc ccgcgcgccc
     2521 gcgcggatac cagcgcacgc gctcgatcgc cgcgtagagc atccgcttgt cggaggtgaa
     2581 ctgctgaagc gccccgacgc ccgcgctcgt gcgcatgatg gcgaccaggt cgccgggctg
     2641 catctgctcg tccacgaact tgcgcagggc gctgcgtacg aagtgcatgc tctcgaagga
     2701 ggtgccgagg tcgtcaacga cgagcgcgat ggttcgtcgc acctgctcgg ccttgagggg
     2761 cgcggaaggc gcgggcggca gcgtcttgtc ggcgggcggc gcgccggcgc gcgccccgcc
     2821 cgtcgtaggc atccccgtgg agacgtagga gaagttcgtt atcgtctgct gcttcccgtc
     2881 cacgagaacc tcgaaatcct ccggccgcag gtctgtcacc tgctgcccct tcttgtcgag
     2941 cacgacggcg tcgaactgca ccaggttcga ggtgatgcga accacgtcgt cgtcgtcaac
     3001 ctgcggcgtc ggcgtcggcg tcgggctcgg ggccacggac tgttgctgct gctggcgctg
     3061 cgccggagtc ccggactgcg agagggcggc ggcgggcgaa aggctgagcg cgagggcgag
     3121 tgagatgata tttcgcatgg cttttatgaa tcgggggtcg gcgagtggct agcccgtcgg
     3181 ggaggcgtcc ccaggttagc ggctggcgtt tgcggcgggg atgtgcgatg ctccccgcta
     3241 aatcaacaaa ggcgacgggg agagattatg ccagaccgcg cgaaaaacgg cgacatcgtg
     3301 cgcgtgcact acacggggag gctcgaaggc ggcgagacgt tcgactcgtc gagggacggc
     3361 gacccgctcg agttccgcgt cggggcgggc gaggtgatac ccggcttcga cgaggccgtg
     3421 cggggcatgg ccgagggcga gtcgaggacg gtcgagatag aggcggacga cgcctacggc
     3481 cagcgccgcg aggggctcgt cgcgcaggtc gagcgcgcct cggccgagtt cccgcaggag
     3541 ccgcaggtgg gcatgaactt catactaccg ctcgaaggcg gcagccagct cgaagtcgtc
     3601 gtcacggaag tcacgcccga gcacgtcacg atagacggca accacccgct cgcaggcaag
     3661 aagctcatct tcgacgttga gcttgtcgaa ataagccgcg agtaaaaagc cgcgggttaa
     3721 aatgagaggg gggcgaaggc cgcgtcggcc ttcgccccct catttacttc cctgctcgtc
     3781 gtcctcttca gagaccccga agtagtacat ccagtcggcc gtctcagact cccggacgac
     3841 ggaggggcgc cgttcgtcgt cttcgccgcc cgcggcggcc gcgtcgtcga gccgcctgcg
     3901 gaactcgccc gagcgcacga cctcgacgcc gaggcggcgg acgtagtcgg cgagcgcgcg
     3961 gtcggaggtg acgaccttga gagtgcgccg ctcgcgcgag ctttcggcga gctgcttgat
     4021 gcgggtgtct gcgtccgagc cgcgccccga gtagtgtacg cgcacgccca tgaagtctga
     4081 gccgtcgggg aagaagtcgt cgggcgcgcc gtcgaagacg acctctacac gggcgcccgc
     4141 cgcgcgcgag aattgcacaa gctcagagag cagccgcctg cgcgcgccgg cgcggtcttt
     4201 gtgccagccg acgcgctgcc ccatcacgtt gttgccgtca acgaggtaag gcactctctc
     4261 ctattagagc acgaagttgt aggtgagcac gcccgagacc ttgacgggct tgcccgacag
     4321 cagagtcggc gagaagcgcg cctgccgcgc ggcctgcacc gccgcctgtt gaagcagagg
     4381 gtggcccgag acggcgctcg ccgagatgac cttgcccgac tcgtcaacgg tgacctgcac
     4441 cgtcacagtc ccctgagccc tcgccgcctt cgctatcggc gggtacgtgg gctgcggctt
     4501 gctcacggcc ttgccgttga ggacgccggc gctgatgacc ttactgccgc cgggggccgc
     4561 cggcgcgggc ggtggcgggg gcgcggggcc tgccggcgtg ccctcctcgg cctcggcgcc
     4621 cggctcgtcg ccgcccgcga cgctgaccat ctcgccgccc ggcatctgca cgtaggcgcg
     4681 cagtatctgc cactcgccgc cctcgcgctg catcgtgacg aagtagcggc cgctcgcctt
     4741 cgtgccctcg accgagacgg tgaagccggc gaagcctccg ccgccagcct cggtcttgaa
     4801 agtgccgacg gggaagcccg tgctctttat gtcgcctagc ctcgcgcgcg ccgcctcgct
     4861 ccgtcgcaac tcgccctccg ccatctggta aggctccgag gacttcatgg tgctctcgac
     4921 gtacctgtag ccgaggtaga tggcgacgcc cgccccgacg ccgagcatga cgagcacgcc
     4981 caggataatc agcagaatct tccccgcacg cgacttgcgg cgcggctgcg cggcgtagcc
     5041 gggcggctgt gacggcggcg cctgctccgg cccgacgccc caggaggttc gtatctcctg
     5101 ctgctgcggc gggacgtaag ggggcggttg cggcgtctgc gcgacgggct ggcctgttgg
     5161 agtcccgcag cgcgggcaga acttcacggc cgctgggagc tggccgccgc agttcagaca
     5221 gttcatcgtc tcgtcctccg ggggtttttt aagggcgccg ggcccggctc gcccgtcacc
     5281 cggccgggcc gtagtatccc acaaccgcgc cgcgccggca cggcccgcag cccgaatcca
     5341 tttgacatcc gggcgccgcc tgtttaacct ctcttccgct caaactcgcc gggcgacgcc
     5401 ctcgcttcgg atccgtcaac cgctttagca ctaaagttca cacgttaagc gaacactcca
     5461 tacgccgcgc gccccggcca cttcgcggcc gcgaccgtcc cggaataacc cctttaagga
     5521 gacttaccct tatgttcccg tgcaagccct ccagactcct gcgtgcgtct tcggccgccc
     5581 tcgcgctaca gctcacgctg ctcggcgcgg gcttggcctc cggcgcccac gcggccacgc
     5641 gccgggcccc gcgcgccgcc gctaaggccg gccagcagac gccgccgcag ccgtcgccgt
     5701 cgccgcaggc gcccgccacg ggcgcggccg cgccggccgc ctcacccgcc gcccccgcgc
     5761 aggctcccgc cgggcccggc gcgccgccgc cgcaggccga gaagcctttc gccgagataa
     5821 tcaaagacgc cgaggtgata aagggcctct tcaccatcta ccgcaaggac gagaaggtga
     5881 tgatggagat aatgcccgag cagttcgaca agatcttcct catctcgccg acgatggagt
     5941 ccggcatagg cgagcgcggc ttcctgagcg cgcaggtcat gcaggagttc gccttctccc
     6001 tgcgccgcaa cggcaagaac gtgcagctcg tggcgaagaa cgtcaactac cgcgcgggcg
     6061 acaaggcggc catacgccgc gccgttgacc gctcgttcgc cgactccgtc ataagctcgg
     6121 cgaagttcga gagccagccg caccccgacc gcaagagcgt cctcgttgac ctgagcagct
     6181 tcctgctcac agacctcccg ctcatcggct acgcgctcga gagcgtctat cgcatcccct
     6241 accgacttga cgccaagaac agcgccttcg ccggggtgaa gggcttcccc gacaacgtcg
     6301 agatagagac gcttttgaac tactcggtcg agcgcccgcc gctcgcgccg ctcacgccgt
     6361 cgccggtacc gatgccgcgg ccgccgctcg cgccgcccga cctgcgcggc atacagttcc
     6421 gcgtccgcta cagcctctcg tccatcccgc agactgctta ccggccgcgc ctggcggacg
     6481 accgcgtagg ccacttcgcc accatctacc aagactacac ggacgaccgc gaggacacgc
     6541 cctacgtccg ctacatcaac cgctggaacc tggtcaagaa agacccctcg gccgcgctct
     6601 ccgagcccgt ccagcccgtc gtcttctgga tggagaacgc gataccggag aagtaccgca
     6661 aggccgtcgc cgacggcgtg ctgatgtgga acagggcgtt cgagcgcata ggcttcaagg
     6721 acgccgtgca ggtcaagcag cagcccgaca actccgactg ggacccggcc gacgtgcgct
     6781 tcagcaccat acgctggttc atagcgaccg acgccggctt cgccatcggc ccgtcgcgcg
     6841 ccaacccctt cacgggcgag atatacgacg ccgacataag cttcagcgag gcgatgacgc
     6901 gcggcgtgcg cagcgagttc caggagttcg ttgacccgct cgcgaatgag acgcagacga
     6961 acgccatgga ggtcttgcac tccctgcgcg gccgcttcgg cacctgcaac tacgccaacg
     7021 aggccgcgcg cgaggcgtcc ttcggctacc agatgctctt gacgcgcggg ctcgtcagca
     7081 aggaggaggc cgaggagcag tacgtccgcg acttcctcac gcacgtcacc gcgcacgagg
     7141 tcggccacac gctcggcctt cgccacaact tccgcgccag caccctgcac ccgctcgaca
     7201 agctccagga cacggcgctc accaacgccg agggcctgac cggctccgtg atggactaca
     7261 cgcccgtcaa catcgcgccc aacggcgcca agcaggggca gtactggcag accacgctcg
     7321 gcacctacga ctactgggcc atcgagtacg cctacaagcc catcgccgct tcgagcgtcg
     7381 agggcgagcg cgccgagctc aacaagatcg cctcgcgcgt cgccgaagcc aagctcgcct
     7441 acggcacgga cgaggacgtg ttcggcttag accccatcgg catcgacccg cgcacgaacc
     7501 gatgggacta cgccgcagac ccgctgccct ggtacgagac gcgcacgaag ctcgtgcacg
     7561 aactctggga cagcctcgaa gctaagttcg cgcagccggg caagcgctac cagaagctcc
     7621 gctacgcctt caacggcggc ttcaacgagc tgtcgaacgc gatgatg
//
LOCUS       DASPKR010000267         7556 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_164548, whole genome shotgun sequence.
ACCESSION   DASPKR010000267 DASPKR010000000
VERSION     DASPKR010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7556)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7556
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164548"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..657
                     /locus_tag="VD968_07435"
     CDS             <1..657
                     /locus_tag="VD968_07435"
                     /inference="COORDINATES: protein motif:HMM:NF012900.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HYE14254.1"
                     /translation="HAPAPRVKICCVGSVGEAWAAIRAGASAIGLVSEMPSGPGVISE
                     GLIAEIAAAVPPAVTTFLLTCKQDAGSIIAQQRRCRANALQLCDRVGEGVYARLRDAL
                     PGVSLIQVVHVTGRESVAEAVAASRHVDAVLLDSGNPSLPVKELGGTGRAHDWALSAE
                     IREAVPVPVFLAGGLRPENVGEAVERVRPFGIDVCSGVRTGGRLDEEKLAALFDRLKA
                     "
     gene            654..1292
                     /locus_tag="VD968_07440"
     CDS             654..1292
                     /locus_tag="VD968_07440"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HYE14255.1"
                     /translation="MTLCMGNGKVRGILFDLDGTLLDSFPSHFEAYRVMFARYRIEIS
                     EESFLAAYSPNWYHTYEALGLPGEVWEEANSHWVEAAAALPPLPFPGAAETLEALGSS
                     YELGVVTSGSRGRVLRDLERTGIGRFFRVVVTGDDVREPKPAPEGLELGLARMGLSPG
                     EAVYVGDAHADYEMARAAGVEFLGIPSSFASLKGDHPCRKVLSITDLVEVFK"
     gene            1289..1786
                     /locus_tag="VD968_07445"
     CDS             1289..1786
                     /locus_tag="VD968_07445"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: protein motif:HMM:NF025793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0052717 - tRNA-specific adenosine-34
                     deaminase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HYE14256.1"
                     /translation="MTDDSPTSVDLEHVNRAVRFALEAEAAGNLPIGAVITLGGEVVA
                     GAGNAVLAPVYHPGRHAEIEALRLVPPALWPRAREMTCYTTLEPCVMCMGALLLHGVG
                     RVVFGSTDAEGGAGPVLAHLPRYYAGGRGAPRWVGPVAPEACDPLFDRARARFDSLPC
                     GRDHF"
     gene            1960..4977
                     /locus_tag="VD968_07450"
     CDS             1960..4977
                     /locus_tag="VD968_07450"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE14257.1"
                     /translation="MGSPFPSRRAATALVLLLLAFVPATRAQTQITAGTVQGTIEDAN
                     GAVVPGATVEVKNVGTNLTRTLTTDEGGRFVFLQLPPGRYTLTASKQGFATLAQEEFT
                     VNVGQAATLDLVMKVSQIEERITVSAVQTVDTAATQTTTTIEERSVANLPVLGRKFED
                     LLTLTPNVSITQGPDGDEINFAGQRGVFNNISLDGGDYMNGFFGEQAGGQRAAIDIPL
                     DAIKEFQVIATGATAEFGRTAGGVVNVITKSGTNQFHGSLFHFQRLEALTANTSDGKP
                     LTDFHREQFGGNVGGPLKKDKAFFFVAYEQIFENLTRANLSEQVGDTPCPVTAPTIIA
                     NEAAINSNTDCQRLALLNFISATRGQEEGLPVERPIRNSAILGKVDWDLTSNNRLTLS
                     HNFDYSKNENQTFDVATYGNSANGIEGPSKIHAFNANLFTTLSPTKVNEFHFTYGREE
                     RPRSAVPSNVPADTAMGFATTFRFGNPFFLQPAVDEVFWRTQVKDNFSIVSGRHTAKF
                     GGEWVHSLNSQVFRGFFTGRYIFDSVTGFLRYASPAAPGGFGPSTVACSNGTYVTAPA
                     TCPAGTTPTGGPLLLYLQGAGRTGPATDAAGFSEIDNEDIALFAQDKWQARSNLTLNF
                     GLRWEAQIFPGPVVPPEETAYGIFLGDPRFPSDGTLPSQKKMFQPRVGLAWDIGGNGR
                     SVLRANYGIYNARQNMLSQVGSITTNGVQQQTIFLNTPIIASGVPGPVWPGVVTPPST
                     AASCTAGGVTNPFPCFSGVRVFSRDYANPRIYTTNVAFEQELAREVSLYLDFTHAKGV
                     HLTRFLNVNRNNFFTPFLGEVMVTSANGKSLYRAFTAGLRKRFSRGYQFEMNYTFSKD
                     LDDDSNERDPFTDRAFDINNLQLDYALSDRDIRHRFNFFSNFDIPGGFDLNARIQARS
                     AQPITPVPRTATNRNTLRKNNEYFSFDWRLQRPFHFSESVAIIPIVEMFNTFNTENNI
                     NPLVTPGLFNFDGFLRQGVGDPRQVQLAVKLVF"
     gene            complement(5049..6932)
                     /locus_tag="VD968_07455"
     CDS             complement(5049..6932)
                     /locus_tag="VD968_07455"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HYE14258.1"
                     /translation="MKRERQPHPFGTCCAALAAVALAALAFASCTNTAARSEYFGKVT
                     PPPGQVLRYVTGSEPESLDPQISTGQPEARIYMALYEGLVEYDPKTMEPIPAVAESWK
                     INEDSTEFVFFMRKNARWSDGEKLTAHDFVYTVRRGLAPALASRNAPFGYYLKNGQAY
                     NEGAAFVRDPATGRFLEESEAAPPAATPAGEKPHAPKRLVVAGDEKGREKEFKANPRL
                     KELIAGKELVPVTAEDVGVEAVDDYTVRFVLEQPTPFFLSVLPFQFFRAVPRRAIEKH
                     GNAAWTKPGNIVTSGPFRLKEWKPYDQIVVERDPMYWDAANVRLDEIRFYPSESNTTV
                     MNLYKAGEVDATPNHVVPASWTDSVRHLKDYMDKPEAAIEYYVINTKKPPMDDVRVRK
                     AFNMALDKRALAVWKRIVKPLTAFSPEGIFPGYPQPAGDGFEPERAKQLLAEAGYRDA
                     SGKFDPKKFPAGEVEIAFNAQESVRQQAEMLQAQWKQNLGITIPLRAMEFKAFLSARP
                     KLEYKGFARSGWGADYMDPVTFLSLFYTAGGNNGTGWSDPKYVEMLDEANRTLDPAKR
                     YELLAKAEAFLLDAQPVIPIWTPGTNWMKKPYVKGMYANPGTLHAWKYVYIEHDPSKW
                     GAD"
     gene            7158..>7556
                     /locus_tag="VD968_07460"
     CDS             7158..>7556
                     /locus_tag="VD968_07460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14259.1"
                     /translation="MTRRTFANSLSAVALFLAFASTAAAQDFQRTYNPGPGGSVVITN
                     VSGDVNVAGHDAPGVTVTAFKEGADRDQVEVEDLSSGGRVELRAKYPRNCNCDASVRF
                     EVRVPRSGVNIERISTASGDISARDFAGDVK"
BASE COUNT         1252 a         2667 c         2380 g         1257 t
ORIGIN      
        1 cacgcccccg cgccgagagt caagatatgc tgcgtcggca gcgtcggcga ggcttgggcg
       61 gcgatacgcg cgggcgcctc cgccatcggc ctcgtctctg agatgccgag cgggcccggc
      121 gtcatcagcg aagggctgat agccgagata gccgcggccg tgccgcccgc cgtgaccacc
      181 ttcctcctga cctgcaaaca ggacgcgggc tcgatcatcg cgcagcagcg ccgctgccgc
      241 gccaacgccc tacagctctg cgaccgcgtc ggcgagggcg tttacgcgcg cctgcgcgac
      301 gcgctgcccg gcgtctcgct catacaggtc gttcacgtca ccgggcgcga gtcggtcgca
      361 gaggccgtcg cggcctcccg ccacgttgac gcggtactgc tcgactccgg caacccctcg
      421 ctccccgtca aggaactcgg cggcacgggc cgagcgcacg actgggcctt gagcgccgag
      481 atacgcgagg ccgtccctgt cccggtcttt ctcgcgggcg ggctgcggcc cgagaacgtc
      541 ggcgaggccg tcgagcgcgt ccggcccttc ggcatagacg tttgcagcgg cgtccgcacc
      601 ggcggcaggc tcgacgaaga gaagctcgcc gcccttttcg accggctgaa ggcatgactc
      661 tctgcatggg caacgggaag gtcagaggga ttctgttcga cctggacggg acgctgctcg
      721 actcgttccc ttcgcacttc gaggcgtacc gcgtcatgtt cgcgcgctac cgcatagaga
      781 tttccgagga gagctttctg gccgcctact cgccgaactg gtatcacaca tacgaggcgc
      841 tgggcctgcc cggcgaggtc tgggaggagg cgaactccca ctgggtcgag gccgccgccg
      901 cactgccgcc gctccccttc cccggcgctg ccgagacgct agaggcgctc ggcagctcct
      961 acgagcttgg cgtcgtcacc tccggctcgc gcgggcgtgt cctgagagat ttggagagga
     1021 cggggatagg ccgcttcttc cgggtggtag tcacgggcga cgacgtgcgc gagcctaagc
     1081 ccgcgcccga agggctggag ttggggctcg cgcggatggg cctctcgccc ggcgaggccg
     1141 tctatgtcgg cgacgcgcac gccgactacg agatggcgcg cgccgcgggc gtcgagttcc
     1201 tcggcatccc cagctcgttc gcgagcctca agggcgacca cccctgccga aaggttctgt
     1261 caatcacaga cctagtcgaa gtcttcaaat gacagacgac tccccgacaa gcgttgacct
     1321 tgagcacgtc aaccgcgccg tccgtttcgc gctcgaagcc gaagccgccg gcaacctgcc
     1381 catcggcgcc gtcataacgc tcggcggcga ggtggtggcc ggcgccggca acgccgtcct
     1441 cgcgcctgtc tatcatccgg gccgccacgc ggagattgaa gcgctgcggc tcgtcccccc
     1501 cgcgctctgg ccccgcgcgc gcgagatgac ctgctacacg acgctcgagc cgtgcgtgat
     1561 gtgcatgggg gcgctgctgc tgcacggcgt cggccgcgtc gtcttcggct cgacggacgc
     1621 ggagggcggc gcagggccag tgctcgcgca cctgccgcgc tactacgcgg gcgggcgcgg
     1681 agccccgcgc tgggtcggcc ccgtcgcgcc cgaggcgtgc gacccgctct tcgaccgggc
     1741 gcgcgcccgc ttcgactcgc tcccctgcgg cagagaccat ttctaagtgc cgcggcgaga
     1801 agttcgttga cacgcgcggc gccggctatt taacatctgc cgactcgaaa cagccgcgac
     1861 gctttccgcc ggcgcagaac cgagtccgaa ccggcgattc cacctcgcgc gagacgccgc
     1921 gaccgtgcgg cgcggtcaca atcaaaacag gagaataaaa tgggttcccc ctttcccagc
     1981 aggcgcgcgg cgaccgcgct cgtcctactc cttctcgcct tcgtccccgc cacgcgcgcg
     2041 cagacgcaga tcacggcagg caccgtgcag ggaacgattg aggacgccaa cggcgccgtc
     2101 gtgcccggcg ccacggtcga ggtcaaaaac gtaggcacca acctgacgcg cacgctcacg
     2161 acggacgagg gcggccgctt cgtcttcctg caactcccgc cgggccgcta cacgctgacg
     2221 gcctcgaagc agggcttcgc cacgctcgcg caggaggagt tcaccgtcaa cgtcgggcag
     2281 gccgccaccc tcgacctcgt gatgaaggtc tcgcagatag aggagaggat aacggtctcg
     2341 gccgtgcaga ccgttgacac ggcggccacg cagacgacga cgaccatcga ggagcgctcg
     2401 gtggcgaacc tccccgtgct cggccgcaag ttcgaagacc ttctgacgct cacgccgaac
     2461 gtctcgataa cgcaggggcc ggacggcgat gagataaact tcgccggcca gcgcggcgtc
     2521 tttaacaaca taagcctcga cggcggcgac tacatgaacg gcttcttcgg cgagcaggcc
     2581 ggcggccagc gcgccgccat tgacatcccg ctcgacgcca tcaaggagtt ccaggtcatc
     2641 gccacgggcg caacggccga gttcgggcgc acggccggcg gcgtcgtcaa cgtcatcacc
     2701 aagtcaggga cgaaccagtt ccacgggagc cttttccact tccagcgcct ggaagccctc
     2761 accgcgaaca cctccgacgg caagcccctg acggacttcc accgcgagca gttcggcggc
     2821 aacgtaggcg gccccctgaa gaaggacaag gccttcttct tcgtcgccta cgagcagatt
     2881 ttcgagaacc tcacgcgcgc gaacctctcc gagcaggtcg gcgacacgcc ctgccccgtc
     2941 accgccccga ccatcatcgc gaacgaggcc gccatcaact cgaacaccga ctgccagcgg
     3001 ctcgccctcc tgaacttcat aagcgcgacg cgcgggcagg aggaggggct gccggtcgag
     3061 cggcccatca ggaactccgc catcctcggc aaagttgact gggacttgac gagcaacaac
     3121 cgcctgacgc tctcgcacaa cttcgactac tcgaagaacg agaaccagac cttcgacgtg
     3181 gcgacctacg gcaactccgc gaacggcatc gaaggcccct cgaagattca cgccttcaac
     3241 gcgaacctgt tcacgacgct ctcgcccacc aaagtcaacg agttccactt cacctacggg
     3301 cgcgaggagc ggccgcgctc ggcagtcccc tcgaacgtgc cggccgacac ggcgatgggc
     3361 ttcgccacca ccttccgctt cggcaacccc ttcttcctac agcccgccgt ggacgaggtc
     3421 ttctggcgca cgcaggtcaa ggacaacttc tcgatagtct cgggccgcca caccgccaag
     3481 ttcggcggcg agtgggttca cagcctcaac tcgcaggtct tccggggctt cttcaccggg
     3541 cgctacatct tcgacagcgt gaccggcttc ctgcgctacg cctcgccggc cgcgcccggc
     3601 ggcttcggcc cctcgaccgt cgcctgctct aacggcacat acgtcaccgc gcccgcgacc
     3661 tgcccggccg gcacgacgcc gacgggaggg ccgctcctgc tctacctgca gggcgccggc
     3721 cgcacgggcc ccgcgacgga cgccgccggc ttctccgaga ttgacaacga agacatcgcg
     3781 ctcttcgcgc aggacaagtg gcaggcgcgc tcgaacctca cgctcaactt cgggctgcgc
     3841 tgggaggcgc agattttccc cgggccggtc gtcccccccg aggagacggc ctacggcatc
     3901 ttcctcgggg acccgcgctt cccttccgac ggcacgctcc cgagccagaa gaagatgttc
     3961 cagccgcgcg tcgggctcgc gtgggacata ggcggcaacg gccgctcggt gcttcgcgcc
     4021 aattacggca tctacaacgc gcgccagaat atgctcagcc aggtcggctc gataacgact
     4081 aacggcgtgc agcagcagac catcttcctc aacacgccga ttatcgcctc cggcgtcccc
     4141 ggccccgtgt ggcccggcgt cgtgacgccg ccctcgactg ccgcctcctg cacggccgga
     4201 ggggtgacga acccgttccc ctgcttctcg ggcgtcaggg tcttcagccg cgactacgcc
     4261 aacccgcgca tctacaccac caacgtcgcc ttcgagcagg agctcgcccg tgaggtctcg
     4321 ctctacctcg acttcacgca cgcgaagggc gtgcacctca ctcgcttcct caacgtaaac
     4381 cgcaacaact tcttcacgcc cttcctcggc gaggtgatgg tgacgagcgc caacggcaag
     4441 tcgctctacc gcgccttcac ggcggggctt cgcaagcgct tcagccgcgg ctaccagttc
     4501 gagatgaact ataccttctc gaaagacttg gacgacgact cgaacgagcg cgacccgttc
     4561 accgaccgcg ccttcgacat caacaacctt cagctcgact acgcgctctc agaccgcgac
     4621 atacgccacc gcttcaactt cttctcgaac ttcgacattc cgggcggctt cgacctgaac
     4681 gcccgcattc aggcgcgcag cgcgcagccc atcacgcccg tcccgcgcac ggccacgaac
     4741 cgaaacacgc ttcggaagaa caacgagtac ttctccttcg attggcgttt gcagcgcccc
     4801 ttccacttct cggagtcggt agcgatcatc cccatcgtcg agatgttcaa taccttcaac
     4861 accgagaaca acatcaaccc gctcgtcact ccggggctct tcaacttcga cggcttcctc
     4921 cgccagggcg tcggcgaccc gcgccaggta caactcgccg tcaagcttgt cttctgaggg
     4981 aggcgagaaa acgcgaaaag ggggagggcc acggccctcc cccttttttg ttgcgccccg
     5041 ccttcccctt agtccgcgcc ccacttcgag gggtcgtgct cgatatagac gtacttccac
     5101 gcgtggagag tgccggggtt ggcgtacatg cctttgacgt agggcttctt catccagttc
     5161 gtgccgggcg tccagatggg gatgacgggc tgcgcgtcga ggaggaacgc ctcggccttg
     5221 gcgagcagct cgtagcgctt cgcggggtcg agcgtgcggt tggcctcgtc gagcatctcg
     5281 acgtacttcg ggtcagacca gcccgtgccg ttgttgccgc ccgccgtgta gaagaggctc
     5341 aggaacgtga ccgggtccat gtagtccgcg ccccagcccg aacgggcgaa gcccttgtac
     5401 tcgagcttgg gcctggcgct caggaacgcc ttgaactcca tcgcgcgcag ggggatggtg
     5461 atgccgaggt tctgcttcca ctgcgcctga agcatctcgg cctgctgccg gacggactcc
     5521 tgcgcgttga aggcaatctc gacctcgccc gccgggaact tcttcgggtc gaacttgccc
     5581 gaggcgtcgc ggtagcctgc ctcggcgaga agctgcttgg cgcgctccgg ttcgaagccg
     5641 tcgccggccg gctgcgggta gccggggaat atgccctcgg gggagaaggc cgtcaaaggc
     5701 ttaactatcc gcttccacac tgcgagcgcg cgcttgtcta aggccatgtt gaaagccttg
     5761 cgcacgcgca catcgtccat cggcggcttc tttgtgttga tgacgtaata ctcgatggcc
     5821 gcctccggct tgtccatata gtccttgagg tggcgcacag agtctgtcca agaggcgggg
     5881 acgacgtggt tgggcgtggc gtcaacctct ccggccttgt agaggttcat taccgtcgtg
     5941 ttgctctccg acgggtagaa ccttatctcg tcgaggcgca cgttcgcggc gtcccagtac
     6001 atcgggtcgc gctctacaac gatctggtcg tagggcttcc actccttcag gcggaacggg
     6061 ccgctcgtga cgatgttgcc gggcttcgtc caggcggcgt tgccgtgctt ctcgattgcg
     6121 cggcgcggga cggcgcggaa gaactggaac ggcagcacgc tcaggaagaa gggcgtcggc
     6181 tgctccagga cgaagcgcac ggtgtagtcg tcaacggcct cgacgccaac gtcctcggcc
     6241 gtgaccggca cgagctcctt gccggcgatt aactctttga ggcgcgggtt ggccttgaac
     6301 tccttctcgc gccccttctc gtcgccggcg acgacgagcc gcttcggcgc gtgcggcttc
     6361 tcaccggccg gcgtcgcggc gggcggcgcg gcttccgact cttcgaggaa gcgccccgtc
     6421 gcggggtcgc gcacgaacgc ggcgccctcg ttataagcct ggccgttctt gaggtagtag
     6481 ccgaagggcg cgttgcgcga ggcgagggcg ggcgcgagcc cccgccgcac ggtatagacg
     6541 aagtcgtggg cggtcagctt ttcgccgtca gaccagcggg cgttcttgcg catgaagaag
     6601 acgaactcgg tcgaatcctc gttgatcttc cagctctcgg cgacggccgg tatcggctcc
     6661 atcgtcttcg ggtcgtactc gaccaggccc tcgtagagcg ccatgtagat gcgcgcctcg
     6721 ggctggcccg tgcttatctg cgggtcgagc gactccggct ccgagcccgt cacgtagcgg
     6781 agcacctggc cgggcggcgg cgtcaccttc ccgaaatact ccgagcgcgc ggccgtgttc
     6841 gtgcaggagg cgaaggcgag tgcggcgagc gcgacggctg cgagcgcggc gcagcacgtg
     6901 ccgaaggggt gcggctgtct ttctcttttc atggcgcgcg tctccgggcg actttgaaag
     6961 ggcttctggc tgaagggtct taaccggcgg ctcttcgcgc cggggcggtc ggggtcgccg
     7021 tggcgcgtct cccattatgc cacaacgcgg cccgaaaaag ttttgccacg aaagggcggc
     7081 ggccggtgtt ctcacagtaa agcagcggtt attcgactcg ctgacaaaga ccttcgagag
     7141 gagtgacaga aacagttatg acacgccgca ccttcgccaa ctctctatcg gccgtagccc
     7201 tcttcctcgc gttcgcctcc accgccgcgg cgcaggactt ccagcgcaca tacaaccccg
     7261 gccccggcgg gtcggtcgtc atcacgaacg tatccggcga cgtcaacgtc gccggccacg
     7321 acgcgcccgg cgtcaccgtc acggcgttca aggagggcgc cgaccgcgac caggttgagg
     7381 tcgaagacct gagcagcggc ggccgcgtcg agcttcgcgc caagtacccg cgcaactgca
     7441 actgcgacgc gagcgtccgc ttcgaggtca gggttccccg ctcgggcgtg aacatcgaga
     7501 ggatttccac cgcgagcggc gacatctcgg cgcgcgactt cgcgggcgac gttaag
//
LOCUS       DASPKR010000268         2320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_811010, whole genome shotgun sequence.
ACCESSION   DASPKR010000268 DASPKR010000000
VERSION     DASPKR010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_811010"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..540
                     /locus_tag="VD968_07465"
     CDS             <1..540
                     /locus_tag="VD968_07465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14260.1"
                     /translation="DWERLRLEDIRDNATLIDNSLHSLLIHLYGTAALALPPLAAGRD
                     EVDAVIRFTLRLGFVAFLVYQFVRLPRDFAPAAFAEKALLVLFVLICVVSSKFNAWYL
                     GMLLPAALMLEEGRALRRVTVAVSGGELLSLTFFKQAYMLNYFAMVLVPAWLALRKNC
                     GRARVTNDPGPPAGALHEL"
     gene            complement(553..1530)
                     /locus_tag="VD968_07470"
     CDS             complement(553..1530)
                     /locus_tag="VD968_07470"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HYE14261.1"
                     /translation="MGEGILVFIEQRGGAINKTSFEAVAAAQQLGAAVGQQVTAVVLG
                     GGPSLAEEVAGYNLARVISAEHERLTDYTPDAYAEAMEQVVRHTSPSYVVMPHTYLVR
                     DFAPKLAARFGKGLISDCIRMKAEGGQVTFTRRIFLGKMDADVIAKGGQPAFVTFQSG
                     AYRPDHAERGQGAPVEPVRVEVGEARMRPEPPFQEVKQAVDLTKAEVIVAVGRGIKSQ
                     ENLALAEKLAEALGGDIAASRPICDAGWLPIDRQIGSSGQTVAPKLYIALGISGAIQH
                     LVGMKNAGTIVAVNKDPEAPIFDIADYGIVGDLFEVVPALTEEIKRLKG"
     gene            complement(1579..>2320)
                     /locus_tag="VD968_07475"
     CDS             complement(1579..>2320)
                     /locus_tag="VD968_07475"
                     /inference="COORDINATES: protein motif:HMM:NF013200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HYE14262.1"
                     /translation="NKDAVLRVNREGKWIEEGDLSFEVNESDGYALEEALRLKEKKGG
                     EVVVCSMGPQRAKAVIKDALARGADRAIHVTGEGIERAGPYVAARALAEAVRGEQPDL
                     VMTGLQSDDYGYAQTGVILAELLGLPHATIVIEVDASGEEFRVKRELESGWYQWYTMP
                     LPALLTIQSGISQIRYATLKGIMAAKKKEIREVAAAAEALSGGEFQSIERIYLPEKTK
                     QTQFLGDGDAKAGAAQLAEKLRSEARII"
BASE COUNT          352 a          800 c          733 g          435 t
ORIGIN      
        1 gactgggagc ggctcaggct cgaagacata cgtgacaacg cgacgctcat tgacaattcg
       61 ctccactcgc ttctcataca cctctacgga acggccgcgc tcgccctgcc cccgctcgcg
      121 gcggggcgcg acgaggttga cgccgtcatc aggttcacgc tgcggctcgg cttcgtggcc
      181 ttcctcgtat atcaattcgt aaggctcccg cgcgacttcg cgccggcggc cttcgcagag
      241 aaggcgctgc tagtcctctt cgtgctcatc tgcgtcgtaa gctcgaagtt caacgcctgg
      301 tacttgggga tgctgcttcc ggcggcgctg atgctagagg aggggcgcgc gctcaggcgc
      361 gtcacggtgg cggtctccgg gggcgaactg ctctcgctca ccttcttcaa gcaggcgtac
      421 atgctcaact acttcgcgat ggtgctcgtg cctgcctggc tcgccttgag aaagaactgc
      481 gggcgggccc gagtcacgaa cgacccgggc ccgcccgcag gcgcgctgca cgaactttag
      541 cgcccggagg cgctagccct tcagcctctt tatctcctcc gtgagcgcgg ggactacctc
      601 gaagaggtcg ccgacgatgc cgtagtcggc gatgtcgaag atgggcgcct cggggtcttt
      661 gttgacggct acgatggtgc ctgcgttctt cattccgacg aggtgctgta tggcgcccga
      721 gatgccgagc gcgatgtaga gcttgggcgc cacggtctgg cccgaagagc ctatctgcct
      781 gtcaatcggg agccacccgg cgtcgcagat gggccgcgac gcggcgatgt cgccgccgag
      841 agcctcggcc aacttctccg cgagcgccaa gttctcctgg ctcttgatgc cgcgcccaac
      901 ggctacgatg acttcggcct tcgtcaggtc aacggcctgc ttgacctcct ggaacggcgg
      961 ctccggcctc atgcgggcct cgccgacctc gacgcgcacg ggctcgaccg gcgcgccctg
     1021 gccgcgctcg gcgtggtcgg ggcggtaggc gccagactgg aacgtaacga aggcgggctg
     1081 cccgccctta gcgataacgt cggcgtccat cttgcctagg aagatgcggc gcgtgaaagt
     1141 gacctgcccg ccctcggcct tcatccgaat gcagtcgctt ataagcccct tgccgaagcg
     1201 cgccgccagc ttcggcgcga agtcgcgcac gaggtatgtg tgcggcatca cgacgtagct
     1261 cggcgacgtg tggcgcacga cctgctccat cgcctcggcg taggcgtccg gcgtgtagtc
     1321 ggtcagccgc tcgtgctcag cagagatgac gcgggcgagg ttatagccgg cgacctcctc
     1381 cgcgagcgag gggccgccgc ccaggacgac ggccgtcacc tgctgcccca cggccgcgcc
     1441 caactgctgc gcggcggcca cggcctcgaa agaggtcttg ttgatggcgc ccccgcgctg
     1501 ctcgatgaaa actaggattc cttcacccat aaaatagcct tcggcaataa ccggtaagaa
     1561 gtaagcccct gacagcttct aaatgatgcg agcttcgctg cgcagctttt cggcgagctg
     1621 agctgcgccg gctttggcgt cgccgtcgcc gaggaactgc gtctgcttcg tcttctcggg
     1681 caggtatata cgctcgatgg actggaactc gccgcccgaa agcgcctcgg ccgcggcggc
     1741 gacctcgcga atctccttct tcttcgccgc catgatgccc ttgagggtcg cgtagcgaat
     1801 ctggcttatg cccgactgta tcgtgagcag cgccggcaga ggcatcgtgt accactgata
     1861 ccagccgctc tccagctcgc gctttacgcg gaactcctcg cccgaggcgt caacctctat
     1921 gacgatggtc gcgtgcggca ggcccagaag ctcggcgagg atgacgcccg tctgcgcgta
     1981 gccgtagtcg tcggactgca ggcccgtcat caccaagtcg ggctgctcgc cgcggacggc
     2041 ctcggcgagc gctcgcgccg cgacatatgg gcctgcgcgc tcaatcccct cgcccgtgac
     2101 gtgtatggcg cggtcggcgc cgcgcgccag cgcgtccttg atgacggcct tagcgcgctg
     2161 cggccccatc gagcagacga cgacctcgcc gcccttcttc tccttgagcc tgagcgcctc
     2221 ttcgagcgcg tagccgtccg actcgttcac ctcgaacgag aggtcgccct cctctatcca
     2281 cttcccctcg cggttcacgc gcaggactgc gtccttgttc
//
LOCUS       DASPKR010000269        17857 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1458654, whole genome shotgun sequence.
ACCESSION   DASPKR010000269 DASPKR010000000
VERSION     DASPKR010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 17857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17857)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17857
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1458654"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(87..1076)
                     /locus_tag="VD968_07480"
     CDS             complement(87..1076)
                     /locus_tag="VD968_07480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HYE14263.1"
                     /translation="MIHAHRLETHAAALAGRLLGAAFALLLLLASAAPAALAQTGDEG
                     STGETFGDPCRLPGVQVTDDPRGDALLAQYDILWAAVAEPGDLDNKLVFTLKVASLGS
                     LPPNAEWRVMFSGFYAGEYFVGMNTLDPLRGPVFDYGHYNYGSRGERIPVIDGEADGG
                     EYFADGTIRVVMSPEKTGPGFAVGQMIYGIMAETRVVSVSEVFGYTGVVDDVQRGYPY
                     TLVGNASCDATPVEPPAAPAGLAAEAPGNSSPNKREVMLTWTDNSDNEQVFRVERSIS
                     ATGGFVEIGTVGTGVTTYTDTTLQGRSTYHYRVRASNAGGDSGYSNTASVFVK"
     gene            complement(1255..4104)
                     /locus_tag="VD968_07485"
     CDS             complement(1255..4104)
                     /locus_tag="VD968_07485"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing tetratricopeptide repeat
                     protein"
                     /protein_id="HYE14264.1"
                     /translation="MNRTELASRLVAAEGEDERRALLSEHSALADVSLAHALKDICLE
                     AWRSDPPRAVAASDALDLLARTDDSEETAAVRSWAAGVAALVAGQMTQAVAHLDDAAA
                     RFRSLCQPHTAAHTQVSTLIALAMLGRYDEAIETGLAAREVFLAHGDTLAAGKIEQNI
                     GNLCGRRDRYEEARQYLRLAHERFLPTGDFRQLAMIENSLAFLYTLQHDFRSAERLYQ
                     QALDHAESSGLAVTLAEIESSMGNFALFQGRYDRALDMLERSRRRYAALGMPHQSAVA
                     ELELADAYLELNLAGEALAIYKRAIPTFAELGMRAEQARALAQAGRAALAAGDTAEAH
                     RLLGEARSLYAAEGNTVGEAYVTLAEAQLHHAEGDHAQTAVLAAQAEAPLAREGTWRR
                     MLLARWLRGEAARAQGHERLAQILLETTLRESEAQALPQIAERCHTSLGLLAAARGDA
                     ARAEESFKRAVSLIEDLRAPLPAEEFRTAFVADKLAPYDELVRLCLSEGGEARVREAF
                     CYTERARSRALVEMMTGAVAARPRARDEFEAELLAQLEQLREELNWFYSRINRPPAGD
                     DSARTSPEAMRALHDAARERETRVLEIMRQLQQRGGDGALGRTEPLDLNALQRALGGE
                     TALVEYTSLDGELLAFVVTGGGVEVVKSIARESDVAEALAQFRFQIGSLRYGSARMRS
                     HLSRLDERARAHLARLYDMLLRPLEALTGDRRVVVVPHRALHYVPFHALHDGGAYAVE
                     RREFSYAPSAGVLRHCLARPEGRFGRAALFGVADEETPRVRDEIRALAPLFPSSVAFL
                     DEEATLAALREHAPQADVLHLACHGQFRPDNPLFSSLKLGDGWLTVRDAYTLDFRGRL
                     VTLSACETGVSGVAPGDELIGLVRGFFSAGAPTLILSLWTVDDEATADLMRDFYAHLL
                     AGQRPAAALRSAQLNLMKERPHPFFWSPFVLLGRW"
     gene            complement(4255..4869)
                     /locus_tag="VD968_07490"
     CDS             complement(4255..4869)
                     /locus_tag="VD968_07490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14265.1"
                     /translation="MRLTGQHIPFARLADLVEGRLAADAADETRAHLSACERCSAQAA
                     QLERVTGLMRADHSEDAPRDVLFNAVGLFRARRSAAEERPGLLRRLVASLTFDSSART
                     TPAFGLRSGQTAPARQLLFSAGDFDIDVRLAAGGEGWTVSGQVLGPCGGGEVEMVAGG
                     REAAHAALNDLCEFTLPPVPEGSYTLRLRLEGVEVEVPELSLRA"
     gene            complement(4965..5552)
                     /locus_tag="VD968_07495"
     CDS             complement(4965..5552)
                     /locus_tag="VD968_07495"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE14266.1"
                     /translation="MPGRDLTAETDEKLLAACIAGEEAAWEALVRRYQRLIYAIPRRA
                     GLDEDAAAEVFQEVFATLLESAASIERPDRLHAWLVTTARRKTWRIITRSRAARLFSG
                     DEEGEGEVYGLPDEAPLPDDVLLQLEEQHLVRAALGELEGRCNKLLTMLFYTPEPPPY
                     SEIAAALGTTEGSIGPTRARCLKKLLDLLKKKGFS"
     gene            complement(5615..6508)
                     /locus_tag="VD968_07500"
     CDS             complement(5615..6508)
                     /locus_tag="VD968_07500"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HYE14267.1"
                     /translation="MKARIVWLVLCGIWGSTWLFIKLGLRDLPPLSFAAIRFALATLI
                     LSSIVAARRRPMPRAGADWALIAATGVFAFALNYGLLFWGEQHISSGLAALLQATIPV
                     FGMLFAHLHLPGERMTAAKMSGVLLGVAGVGVIFSNQLSVAGPMALWGSVAIVVGAVC
                     VAYANVLVKARGGGIDPALLAAGQMFCGLVPLAAAGLLFEGSPASFRWTTTAVVSLLY
                     LTVVGSVVAFLLFYWLVRNMDVTKTMLIALVTPLFAVLLGMVALGEELGWRTLAGGAL
                     IMSGIAVVVLPRVRKEAARDE"
     gene            complement(6778..7152)
                     /locus_tag="VD968_07505"
     CDS             complement(6778..7152)
                     /locus_tag="VD968_07505"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYE14268.1"
                     /translation="MLEQRKQYAVESREPDAAPEQTASIKLKTLKELTLALLKEVESL
                     KGSAGFDGKLSVDFADEVRRFETDLIRWALMHTGGHQRRAARMLNLKVTTLNAKIKRY
                     GIRPHALPTSNVVEFHPEGQRA"
     gene            complement(7215..7982)
                     /locus_tag="VD968_07510"
     CDS             complement(7215..7982)
                     /locus_tag="VD968_07510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14269.1"
                     /translation="MRRLAYVPFALSVGALIQMLFAAGAAAEEAAEAGAHGSRPVCER
                     RAEPANAEPEALRPAGAASPAAARPAEAVLPEAARPMALPTPLDLSSVELVDEEAYSD
                     VFRILKEENSCSRFFGGPAKAVEVFNHFSRELRGKALGDAATAVRMAGSYTLYRNQRT
                     GVTYRLFEDAAVNTSGPFASRVMSAGPLSRMMVGRFPAQSRQARALIMLHELGHLVEG
                     EGGAWLLPNDGNDPRMSDRNTREVERRCVKQLLALGG"
     gene            complement(8431..9225)
                     /locus_tag="VD968_07515"
     CDS             complement(8431..9225)
                     /locus_tag="VD968_07515"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HYE14270.1"
                     /translation="MTDAAAQAPIRVLVVDDEPLAREKIRGMAGDDPEVRIVGECANG
                     AEAIEAIQSIRPDLILLDVQMPEVGGFAVLEALKEKDGGLPPVIFITAYDHYAVRAFE
                     VHALDYLLKPFDRERFLAAIERAKRQIRREQSPGLDERLIALLEQMREKPRYSERLVV
                     KTGGRVFFLTTDEVDWIEAEGNYVSIHAGKKAYLLRETISSLEAQLDPREFVRIHRSA
                     IVNINRIKELQPWSHGEYHVILNDGTQLTLSRSYREKLQAALGNSL"
     gene            complement(9391..10563)
                     /locus_tag="VD968_07520"
     CDS             complement(9391..10563)
                     /locus_tag="VD968_07520"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HYE14271.1"
                     /translation="MNAKTPAYDLPPARPAAPATRPARLWQKAWARWAVIFGGWTALA
                     FFFTSQLYYTRVLSERPITWLDAATSQFIYPYLWAFGTVIVLKLADRFPVEGSGWWRS
                     LLLHLLFATLFAVAVSGAFHVIYHFLFVNAPDKPFSPRATLQWIIFNSSENYGIYGLL
                     LLLNQSFRYYKRFREGELRSSQLETQLTQAQLQALKMQLHPHFLFNTLHSISALVHKD
                     PDSADRMIARLGDFLRLTLENSGAHEVTLRKELEFLKCYLEIERVRFQDRLTTHMDIE
                     AHALDAPVPNLILQPIVENALRHGVAPRSAPGRIEISAKRDNGSLRIQVRDNGPGLSA
                     IPKPNGRSREGLGLANTRARLHQLYGSAHRFELANAPGGGLLVTLEIPASTAAPRP"
     gene            10857..11903
                     /locus_tag="VD968_07525"
     CDS             10857..11903
                     /locus_tag="VD968_07525"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HYE14272.1"
                     /translation="MRITELDAGGEHELLLAGSEPESGYRGIIAIHSTALGPAVGGAR
                     FWNYASEAEAVTDALRLSRGMTYKNALAGLPLGGGKSVIIGDNRTTEREVIFRAHGRF
                     VESLGGRYITAEDVGTSPSDMVIVREETRHVGGLPDRSGDPSPVTAHGVFRAIQASAR
                     FRRGSGDLRGMRVALQGCGHVGYHLARELHEAGARLVVADAHGERARRVAEEFDAEVV
                     GTDEIYSADTDVLAPCALGAVINDATIPLLRAGIVAGAANNQLLEARHGDALERRGIL
                     YAPDYVANAGGIINGCIELLGWEPARARRQVEEIYDTLLDIFETARAEGIPTYAAADR
                     LAEERLAAATPRGI"
     gene            11907..12416
                     /locus_tag="VD968_07530"
     CDS             11907..12416
                     /locus_tag="VD968_07530"
                     /inference="COORDINATES: protein motif:HMM:TIGR02777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase ligase N-terminal
                     domain-containing protein"
                     /protein_id="HYE14273.1"
                     /translation="MARKPRFVVQEHHASHLHWDFRLEITGTLKSWAVPKGPSLDPSV
                     KRLAVEVPDHALSYLTFEGVLPEGTYGAGPVLRWDIGTFDPTGDAAEGWRAGSLRFRL
                     EGSRLRGEWRLFRMKGRGQGGRPLWLLQKVDDEFAVAGHEAEVMGEAKKAAKKRRAVK
                     SPAGKKRSK"
     gene            complement(12382..12603)
                     /locus_tag="VD968_07535"
     CDS             complement(12382..12603)
                     /locus_tag="VD968_07535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14274.1"
                     /translation="MRRLARPRCTYTIRPGMADYNFVTVWKFGAPLAPVWDLIHGSER
                     WPEWWRGVERVGLVRDGALTSSASSPRAT"
     gene            12664..13395
                     /locus_tag="VD968_07540"
     CDS             12664..13395
                     /locus_tag="VD968_07540"
                     /inference="COORDINATES: protein motif:HMM:NF037435.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF434 domain-containing protein"
                     /protein_id="HYE14275.1"
                     /translation="MSPDRRRHRGAHPSDAELFSESSLPALRRATSELSWLLSRGYQQ
                     KSAVKLVGDRHSLRERQRLAVARAACSDASLARRAARRLSLGDVRGADLIVDGFNVVI
                     AVEAALGGGVLVRGRDGCVRDMSSVHGSYRAVEETERAVLLVGEALEALGPASALWLI
                     DRPVSNSGRLAERIRRLAAERRWPWEVAVEFNPDREIVGSGRVAVTSDSNVLDGARRW
                     VNLNEHLVERHLPSAWVIDLSGADG"
     gene            complement(13392..15026)
                     /locus_tag="VD968_07545"
     CDS             complement(13392..15026)
                     /locus_tag="VD968_07545"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HYE14276.1"
                     /translation="MKFSALAKAYERVAAAAGEPARRRILADLFRKADAPTLEAAAHF
                     TAGELVAPQSADELGIGPGTIGAVLSEMSGREAGEIDDEVRRTGDMSEVVAALVGRPR
                     DTLTVAELWRMVNRAVGRGEDRASLVRSVFGSTSPTGSKYFTRMALGQMRMGVGTGTL
                     ARAIAEAFGVDAASVDRLYAMTNDFGLVAARASKGERALERAGLSLFRPYQFMNAHKM
                     DDPEEIFRRLAGKKIIFEVKYDGARLQIHIKKGRPSEIRFYSRRLNDDTAAMPDLVAA
                     LRKAWKGGDAVLEGEAVAFDPSLKVKQPFQAVLTRLGRVHGVEEKARETPFVLYLFEM
                     VYHDGEDLMSLPQSERRARLAKLFRTTDRVKPTEAVVTDSPVEQADFFRRAIAEGHEG
                     LMAKDPDAPYTPGRRAENWMKIKPAFETLDVVVTGGIWGSGRRRGLLSSLIVSVRDRD
                     GLKTVGKVGTGFSEETLKALTAQLEPKIITARGRDVELEPDVVIEVDFQDIQKTNRYG
                     SGYALRIPRFKRVRADKSTREADTLERLARLYKQTH"
     gene            15130..15699
                     /locus_tag="VD968_07550"
     CDS             15130..15699
                     /locus_tag="VD968_07550"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: protein motif:HMM:TIGR00758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HYE14277.1"
                     /translation="MAKSKKARRLDELAGQIKVCTRCPLHESRTHAVPGDGKYTARVM
                     LIGEAPGREEDESGHPFVGAAGRYLDKVLEGTGIERGDLFITNTVKCRPPKNRVPKKL
                     EVGTCTANYLFEQMGLLAPDLVMLLGGVAAKTVLGVKSVSEARGRVIEREGRRFIVGY
                     HPAVRFYREDLGAKVKEDFALLRRELKKL"
     gene            15830..17467
                     /gene="ligD"
                     /locus_tag="VD968_07555"
     CDS             15830..17467
                     /gene="ligD"
                     /locus_tag="VD968_07555"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HYE14278.1"
                     /translation="MATGLETYWKMRDFRRTPEPKGKVSRANRRRFVVQEHHASKLHF
                     DFRLEMGGVLKSWSVPRGPSLDPADKRLAVQTEDHPVEYLKFEGQIPEGEYGAGRHMK
                     WDDGTYRPTGEGSALEQLEAGRLTFELKGKKLSGEFSLIQMKGRGEGQWLLIKKQDEF
                     AEPGWALELREPVDGKRVLEEKSKAKKQPAAGAAAKSSSARAGVRKVGTRAGASGEKV
                     VPAARALKAKKLGGDRPVRVGRDVVHLTSLDRVYWPDEGITKGELIRYYYEISEHILP
                     HLKGRPLIMKRYPLGVRGQFFHQHDVNEVPEFVRTVTLEVEEGGHTVDYIVGDNRATL
                     LYMANLGAIERHPFHSRVADLDRPDWMVFDLDPGEGVEFETICRLAVAVREVLARLGL
                     EGHPKTSGSRGLHVYVPFRAEYEYERVAEFAERVATVVAREHAEVATVERSLKKRRRG
                     QIYVDHMQNAKGKSVVAPYSVRPREGATVSAPLEWGEVERRRITPRDFTIKNILRRIR
                     SRGDLFKPVLAGRQKLDDAFEAARELLREKRARRARA"
     gene            17534..17725
                     /locus_tag="VD968_07560"
     CDS             17534..17725
                     /locus_tag="VD968_07560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14279.1"
                     /translation="MAGKTSDRESIDTGTDKRYVRRDEKGQFKESDDTGRSLRQDVKQ
                     EAKTKVKSGQGDRGDQKRK"
BASE COUNT         2840 a         5862 c         6375 g         2780 t
ORIGIN      
        1 gacttaaaca gcggattgcg ctttccgacc gacgcgcaga gaggcggccc cggcaggggc
       61 cgcctctctg tcgtatgccg tggccttcac ttgacgaaga cgctcgccgt gttcgagtag
      121 ccggagtcgc ccccggcgtt cgaggcgcgc acgcggtagt ggtacgtgct cctgccctgc
      181 agggtcgtgt ccgtgtaggt cgtcacgccc gtgcccacgg tgcctatctc gacgaagccg
      241 ccggtggccg agatggagcg ctcgacgcgg aaaacctgct cgttgtcgga gttgtccgtc
      301 cacgtgagca tgacctcgcg cttgttgggg ctgctgttgc cgggcgcctc ggccgcgagg
      361 cccgcgggcg ccgcgggcgg ctcgacgggc gtcgcgtcgc acgaggcgtt gccgaccagc
      421 gtgtaggggt aacccctctg cacgtcgtcc accacgcccg tgtagccgaa gacttcggag
      481 acgctgacca cgcgcgtctc cgccatgatg ccgtagatca tctgccccac ggcgaagccc
      541 ggccccgtct tctcgggcga catgacgacg cgtatggtgc cgtcggcgaa gtactcgccg
      601 ccgtccgcct cgccgtcaat gacggggatg cgctcgcccc tcgacccgta gttgtaatga
      661 ccgtaatcga agaccggccc gcgcaagggg tcgagcgtgt tcatcccgac gaaatactcg
      721 cccgcgtaga agccggagaa catcaccctc cattcggcgt tcggcggcag gctgccgagc
      781 gaagcgacct tgagcgtgaa gacgagtttg ttgtcgaggt cgcccggctc ggccacggcg
      841 gcccagagta tgtcgtactg cgccagcagc gcgtcgcccc tcgggtcgtc cgtgacctgc
      901 acgccgggca gcctacacgg gtctccgaac gtctcgcccg tgctgccctc gtcgcccgtc
      961 tgcgcgagcg cggcgggcgc ggccgaggcc agcagcagca ggagcgcgaa ggccgcgccg
     1021 agcagccggc ccgccagcgc ggcggcgtgt gtctctaagc ggtgtgcgtg aatcatctgc
     1081 gtaaacctcc ctccggactt ttcgcctggg cggcgatgac gggcgccgcc tcgcgctgga
     1141 aagacgacgc acaccctgtt tcattttcgg ggaaaattct tccgtctaag gggagtctct
     1201 atgctgcgca ggttagcgcc agggggttga ggaaaacttg agccgccgcc gggcttacca
     1261 gcggccgagg aggacgaacg gcgaccagaa gaaggggtgg ggccgctctt tcatcaaatt
     1321 cagttgggct gagcggagcg ccgcggccgg gcgctgcccc gcgagcaggt gcgcgtagaa
     1381 gtcgcgcatg agatcggcgg tggcttcgtc gtcaacagtc cagaggctca agataagcgt
     1441 gggcgcgccc gcggagaaga agccgcgcac caggccgatc aactcgtcgc cgggcgcgac
     1501 gccgctgacg cccgtctcgc acgcagagag cgtgacgagg cggccgcgga agtcgagcgt
     1561 gtaggcgtcg cgcacggtca gccagccgtc gccgagcttg agggaagaga agagcgggtt
     1621 gtcgggccgg aactgcccgt ggcaggcgag gtgcagaacg tccgcctgcg gcgcgtgctc
     1681 gcggagggcc gcgagcgtgg cctcctcgtc caggaacgcg accgaagagg ggaagagcgg
     1741 cgcgagcgcg cgtatctcgt cgcgcacgcg cggagtctct tcgtcggcca cgccgaagag
     1801 ggcggcgcgg ccgaaccggc cctcgggccg cgcgaggcag tggcgcagaa cgcccgcgct
     1861 aggcgcgtag gagaattcgc ggcgctcgac ggcgtaggcc ccgccgtcgt gaagcgcgtg
     1921 gaaggggacg tagtggagcg cgcggtgagg gacgacgacg accctgcggt ctcccgtcag
     1981 agcctcaagg gggcgcagca gcatgtcgta gaggcgtgcc aggtgcgcgc gcgctcgctc
     2041 gtcgaggcgc gagaggtgcg agcgcatccg cgccgagccg tagcgcagcg accctatctg
     2101 gaagcggaac tgtgcgagcg cctcggccac gtccgactcg cgcgcgatgc tcttcacgac
     2161 ctcgacgccc ccgcccgtga cgacgaaggc cagaagctcg ccgtcgaggc tcgtgtactc
     2221 gacgagcgcc gtctcgccgc cgagcgctcg ctgtaacgcg ttcaagtcca gaggctccgt
     2281 gcggccgagc gcgccgtcgc cgccgcgctg ctgtagctgg cgcatgattt cgagcacgcg
     2341 cgtctcgcgc tcgcgcgcgg cgtcgtgtag ggcgcgcatc gcctcggggc tagtgcgcgc
     2401 cgagtcgtcg cccgcgggcg ggcggttgat gcggctgtag aaccagttca gctcctcgcg
     2461 cagttgttcg agctgcgcga ggagctcggc ctcgaactcg tcgcgggcgc gcgggcgcgc
     2521 ggccacggcg cccgtcatca tctcgacgag ggcgcgcgag cgggcgcgct ccgtgtagca
     2581 gaatgcctcg cgcacgcgcg cctcgccgcc ctcggagagg cagaggcgca cgagctcgtc
     2641 gtagggcgcg agcttgtcgg cgacgaaggc cgtgcggaac tcctcggccg ggagcggcgc
     2701 gcgcaggtct tcgatgaggg agacggcgcg cttgaaagac tcttccgccc gcgccgcgtc
     2761 gccgcgggcc gcggcgagca ggcccaaaga ggtgtggcag cgctcggcta tctgcgggag
     2821 cgcctgcgcc tcggactcgc ggagcgtcgt ctccagaaga atctgcgcga gccgctcgtg
     2881 accttgagcg cgcgcggcct cgccccggag ccagcgcgct aggagcatcc tccgccaggt
     2941 gccttcgcgc gcgagaggcg cctcggcctg cgcggcgagc acggccgtct gcgcgtggtc
     3001 gccctcggcg tggtgtagct gcgcctctgc gagcgtgacg taggcctcgc ccacggtgtt
     3061 cccctcggcc gcgtagagcg agcgcgcctc gccgagcagc cggtgcgcct cggccgtgtc
     3121 gcccgcggcg agagcggccc gcccggcctg cgcgagcgcg cgggcctgct cggctcgcat
     3181 ccccagctcg gcgaaggtag ggatggcgcg cttgtagatt gctagcgcct cgccagcgag
     3241 gttcagctca agatacgcgt ccgccagttc taattccgcg acggcagact ggtgcggcat
     3301 gccgagggcg gcgtagcgcc ggcgcgagcg ctccagcatg tcgagcgctc ggtcgtagcg
     3361 cccctggaag agggcaaagt tgcccatgct gctttcgatc tcggcgagcg tgacggcgag
     3421 ccccgacgac tcggcgtggt cgagcgcctg ctggtagagg cgctcggcgg agcggaagtc
     3481 gtgctgcaag gtgtagagga aggcgagcga gttctcgatc atggcgagct ggcggaagtc
     3541 gccggtgggc aggaagcgct cgtgcgcgag ccgcaggtat tgcctggcct cctcgtatcg
     3601 gtcgcgccgg ccgcagaggt tgccgatgtt ctgctctatc tttcccgcgg cgagcgtgtc
     3661 gccgtgcgcg aggaatactt cgcgcgccgc gaggccggtc tcgatggcct cgtcgtagcg
     3721 gccgagcatc gcgagcgcga tgagcgtgct gacctgcgtg tgcgctgcgg tgtgcggctg
     3781 gcagagcgag cggaagcggg cggcggcgtc gtcgaggtgc gcgacggcct gcgtcatctg
     3841 cccggcgacg agcgcggcca cccccgcggc ccacgagcgc acggccgcag tctcttccga
     3901 gtcgtccgtg cgcgcgagga ggtcgagcgc gtcggaggcg gcgacggcgc gcggcgggtc
     3961 tgagcgccag gcttcgaggc agatgtcctt tagggcgtgc gcgagcgaca cgtcggcgag
     4021 cgccgagtgc tccgagagga gcgcgcgccg ctcgtcctcg ccctcggccg cgaccagccg
     4081 cgaggccagt tccgtccggt tcatccttac agtctcaaag tcaggctcgg cgaaaagggg
     4141 ggaatgccac agaggcacag atagcaccga gactgcactg agaataattc cctgtgcgac
     4201 ctccgtgtgc tctgtgcctg cggtggtaaa ctgtcgtttg ccctaagcta cgccttacgc
     4261 ccggaggctc agctccggca cttccacctc gacgccttcg aggcgcaggc gcagcgtgta
     4321 gctgccttcg gggacgggcg ggagcgtgaa ctcgcagagg tcgttgagcg cggcgtgagc
     4381 cgcctcgcgc ccgcccgcga ccatctcgac ctcgccgccg ccgcagggcc cgagcacctg
     4441 ccccgagacc gtccagcctt cgccgccggc cgcgagccgc acgtcaatgt cgaagtcgcc
     4501 ggcgctgaac aggagctgcc gcgctggcgc cgtctggcct gagcgcagac cgaaggccgg
     4561 cgtcgtgcgc gcgctgctgt cgaaggtgag cgaggccacg agccggcgca acaggccggg
     4621 ccgctcctcg gcggcgctgc ggcgggcccg gaagaggccg acggcgttga agagcacgtc
     4681 gcgcggcgcg tcctcggaat ggtctgcgcg catgaggccg gtgacgcgct ctaactgcgc
     4741 ggcctgcgcc gagcagcgct cgcaggccga gaggtgcgcg cgcgtctcgt ccgcggcgtc
     4801 ggccgcgagg cggccctcga ccaggtcggc cagccgcgcg aaggggatgt gttgtcccgt
     4861 tagtctcatc gtctttgctc cgcggggcgc ctttatcgtc gcggggaacg cccctcgcgt
     4921 gaacagtgcg gcaggggcgg cggaaaatac acggcggatc gagatcagga aaagcccttc
     4981 tttttgagca ggtcgagcag ttttttgagg cagcgggcgc gcgtcgggcc gatgctgccc
     5041 tcggtggtgc cgagcgcggc ggcgatctcc gagtacggcg gcggctccgg cgtgtaaaaa
     5101 agcatcgtca agagcttgtt gcagcgcccc tccaactcgc cgagcgccgc gcgaaccagg
     5161 tgctgctctt cgagctgcaa gagcacgtcg tcgggcagcg gcgcctcgtc cggcaggccg
     5221 taaacttcgc cctcgccctc ctcgtcgccc gagaagaggc gcgccgcgcg cgagcgcgta
     5281 attatcctcc acgtcttccg cctcgccgtc gtcacgagcc acgcgtgcag gcggtcgggc
     5341 cgctcgatgg atgcggcgct ctctaagagc gtggcgaaaa cctcctggaa gacttctgcg
     5401 gcggcgtctt cgtcgaggcc ggcgcggcgc gggatggcgt agatgagccg ctggtaacgg
     5461 cgcacgagcg cctcccacgc ggcctcctcg cccgcgatgc aggccgcgag gagcttctcg
     5521 tcagtctccg ccgttaagtc tctgcccggc acgcgctaga gcataggccg cgggcggcgg
     5581 aaaaggcaaa agctcttgcc ccgcgcgcgg cgggtcactc gtcgcgcgcc gcctctttcc
     5641 tgaccctcgg caggacgacg acggcgatgc ccgacatgat gagggcgccg cccgcgagcg
     5701 tccgccatcc cagctcttcg ccgagcgcca ccatgccgag cagcactgcg aacaggggcg
     5761 tcaccagcgc tatcagcatc gtcttcgtca cgtccatgtt ccgcacgagc cagtagaaga
     5821 ggaggaaggc gacgaccgag ccaaccaccg tcagataaag gagcgacacg acggcggtcg
     5881 tcgtccagcg gaaggaggcg gggctgccct cgaacagaag gcccgccgcg gcgagcggca
     5941 cgagcccgca gaacatctgg cccgcggcca ggagcgcggg gtcaatcccg ccgccccgcg
     6001 cctttacgag cacgttggcg taggcgacgc agaccgcgcc caccacaatc gccacgctcc
     6061 cccacagggc catcggcccc gcgacgctca actggttcga gaagatgacg cctacgcccg
     6121 ccacgcccag cagcacgccc gacatcttcg ccgcagtcat cctctcgccc ggcaggtgca
     6181 ggtgcgcgaa gagcatgccg aagacgggga tggtcgcctg aagcagcgca gcgagcccag
     6241 aggagatgtg ctgctcgccc cagaagagaa ggccgtagtt gagcgcgaag gcgaagacgc
     6301 cggtcgccgc tatgagcgcc cagtcggccc cggcgcgcgg catgggcctg cggcgcgcgg
     6361 cgactatcga ggagaggatg agggtcgcca gcgcgaacct tatcgcggcg aagctcaggg
     6421 gcggcaaatc gcgcaggccg agcttgatga acagccacgt cgagccccat atgccgcaaa
     6481 gaaccagcca gacgatgcga gccttcatcc cggcttctat acgcgaaaga atgcggaaag
     6541 gcaaaagcgg gcgggtgaaa gggcgaaagg ccggggggcg agcctctcaa gctcgccccc
     6601 cggcctttca gacttccgct cgccttcggt cgcgcggggc ggtcgtgcgc cgccccgcct
     6661 cggcggcggg cgcgtaacgt agggctatgg cgggccgtct cggccttcgc gctttttcac
     6721 ggggggagcc tccgggaaaa aacttcgcgg cgcgcgggct tgcgagcgcg ctcttcttca
     6781 ggccctctgc ccttccgggt ggaactcgac gacgttgctg gtcggcagcg cgtgcgggcg
     6841 tatgccgtag cgcttgatct ttgcgttgag cgtcgtcacc ttcaggttta gcatgcgcgc
     6901 ggcgcggcgc tggtggccgc ccgtgtgcat cagcgcccaa cgtatcaggt ccgtctcgaa
     6961 gcggcgcacc tcgtcggcga agtcgacgct cagcttgccg tcgaagccgg ccgagccttt
     7021 gagcgactcg acctctttga ggagggcgag cgtcagctcc ttgagcgtct tgagcttgat
     7081 gctcgccgtc tgctcgggcg cggcgtcggg ctcgcgcgac tcgacggcgt actgcttcct
     7141 ctgttccagc atctcgttag cactcctttc gtccacgtcc caccgcctgt ccgttcggcc
     7201 gcgccggggc ggcctcatcc ccccagggcc agaagttgtt tgacgcagcg ccgctcgacc
     7261 tctctggtgt tccggtcgct catgcgcggg tcgttgccgt cgttcggcag cagccacgcc
     7321 ccgccctcgc cctctacgag gtggcccagc tcgtgaagca tgatgagggc gcgcgcctgc
     7381 cgcgactgcg ccgggaagcg cccgaccatc atccgcgaca gcgggccggc cgacatgacg
     7441 cggctcgcga aaggcccgct ggtgttgacg gcggcgtcct cgaagaggcg gtaggtcact
     7501 cccgtcctct ggttgcggta gagcgtgtag ctgcccgcca tcctgacggc cgtcgcggcg
     7561 tcgccgagcg ccttcccgcg cagctcgcgc gagaagtggt tgaagacctc gacggccttc
     7621 gccggcccgc cgaagaagcg gctgcaagag ttctcttcct tcagtatccg gaacacgtcc
     7681 gagtaagcct cctcgtcaac gagctcgacc gacgaaaggt ctaggggcgt cggcagcgcc
     7741 attggcctgg ccgcctcggg tagaaccgcc tcggccggcc tggccgctgc cggcgaagcg
     7801 gccccggcgg gccttaaagc ctcgggctcg gcgttggccg gctcggcgcg ccgctcgcag
     7861 accggcctcg agccgtgggc gcccgcctcg gccgcctcct cagccgcggc cccggcggcg
     7921 aacagcatct ggatgagcgc gcccacggag agggcgaagg gaacgtaggc cagtcgtcgc
     7981 acggcgacac ctcctcgctt cgtttctcac gtccttctcc ctctcttcgt cccgcctaaa
     8041 cttctcccgc cgcggggcgg gctcgcgtcg cgcaggccct gtctttcaga ctttcggctc
     8101 cggctctgtg ggcgtagccc cctggggata gggcttcggg cgcttgcggc gcacttacgt
     8161 tgacgcggat tttaggcgcg ccccggccgg cgggtaagag aattgtgatg aagtggacag
     8221 acggagtgat gaaacggact cggcggggag gccaaacgtc ggccccgtta cagtttattt
     8281 acagcagtcg tccgacggcg tgaactggac tgaggtcgtt gaggcggccc gcaccgtgtt
     8341 gaggccgccc ctaagtgacg gaaagattat tcagaacgtg ttcgacaaaa aggccgcccg
     8401 taggtgacgc tcgcgagcgg cttcttctgc ctagaggctg ttgccgaggg cggcctgtag
     8461 tttttcgcgg tagctgcgcg agagcgtgag ctgcgtgccg tcgttgagga tgacgtggta
     8521 ctcgccgtgc gaccagggct ggagctcttt gatgcggttg atgttgacta tcgccgagcg
     8581 gtgtatgcgc acgaactcgc gcgggtcgag ctgcgcttca aggctgctga tggtctcgcg
     8641 caggaggtaa gccttcttgc cggcgtggat gctgacgtag ttgccctcgg cctctatcca
     8701 gtccacctcg tcggtggtga ggaagaagac gcgcccgccg gtcttcacga cgagccgctc
     8761 gctgtagcgc ggcttctcgc gcatctgttc gagcaaggcg attagccgct cgtcgagccc
     8821 cggcgactgc tcgcggcgta tctgccgctt ggcgcgctcg atggcggcga ggaaccgctc
     8881 gcggtcgaag ggctttagca ggtagtcgag cgcgtgcacc tcgaaggcgc ggacggcgta
     8941 gtggtcgtag gccgtgatga agatgacggg cggcaggccc ccgtccttct ccttgagggc
     9001 ctcgaggacc gcgaagcccc cgacctcggg catctgaacg tcgaggagta tgaggtcggg
     9061 gcggatggac tgtatggcct cgatggcctc ggcgccgttg gcgcactcgc cgacgatgcg
     9121 cacttcgggg tcgtcgccgg ccatgccgcg gatcttctcg cgcgcgagcg gctcgtcgtc
     9181 cactaccagc actctaatcg gcgcttgtgc ggcggcgtcc gtcatcccgt agaggtctcc
     9241 aacttttcgt ccgagaggga gggcacactt cagccccgcg aaaccgtttt tctaaaaaag
     9301 aaaacaccgc gccgcaggag tttgtgacaa cccgtgcggc ggagtttcaa ttattttcaa
     9361 ctgccgggaa aagcgggcgg ccgtcaggct ttacggtctg ggggcggctg tcgaggccgg
     9421 gatttccagc gtcacgagga gcccccctcc gggcgcgtta gccagctcga agcggtgcgc
     9481 ggagccgtag agctggtgga ggcgcgcccg cgtgttggct aaacccaacc cttcccttga
     9541 cctgccgttc ggctttggga tggcggaaag ccccggcccg ttgtccctca cctgaatacg
     9601 taatgaaccg ttgtcccgtt tcgcggaaat ttctatccgc cccggcgccg agcgcggcgc
     9661 gacgccgtgg cgcagcgcgt tctcgactat cggctggagt atcaggttgg ggacgggggc
     9721 gtcgagggcg tgcgcctcta tgtccatgtg ggtcgtcagg cgatcctgga agcgcacgcg
     9781 ctcgatctca aggtagcact tgaggaactc gagctccttg cggagcgtga cctcgtgcgc
     9841 gccggagttc tccagggtca ggcgcaggaa gtcgcccagg cgggctatca ttcggtctgc
     9901 cgagtccggg tctttgtgga ccagggccga gatggagtgg agggtgttga agaggaagtg
     9961 cgggtgtagc tgcatcttca gggcctgcaa ctgcgcctgc gtcaactgcg tttccagttg
    10021 tgaggagcgc agctccccct cgcggaagcg cttgtagtag cggaacgact ggttgagcag
    10081 cagcagcagc ccgtatatgc cgtagttctc cgacgagttg aagatgatcc actgcagggt
    10141 ggcccgcggc gagaacggct tgtcgggggc gttgacgaac aggaagtggt agatgacgtg
    10201 gaacgcgccc gagaccgcca cggcgaagag cgtcgcgaac aggaggtgca gcaggaggct
    10261 gcgccaccac cccgatccct cgacggggaa gcggtcggcg agcttcaaga cgatgacggt
    10321 gccgaaggcc cagaggtaag ggtatatgaa ctggctggtg gcggcgtcga gccaggtgat
    10381 gggccgctcg ctgaggacgc gcgtgtagta gagttggctc gtgaagaaga aggccagcgc
    10441 agtccagccg ccgaaaatga cggcccagcg cgcccacgcc ttctgccaga ggcgtgcggg
    10501 gcgggtcgcg ggggcggcgg ggcgtgcggg cggaaggtcg tatgcgggcg tcttcgcgtt
    10561 cataattttt tgcctgcgct gctgatcgtc ggcgcacggg cgcaccccgc gcgcgggcgc
    10621 gaaacgggtg aatataaacg ccgcgtgggg cgggtggaaa gctttgagtg acgaaacgga
    10681 ctgaccgagg gacgaacggg ccgcgccggc ccactcgttc gtcaccccgc ggcgcgcaat
    10741 tggctttgcg cgcaaaggcg aaaacggtac ttgccatctg ggcgcgccgg gggcatacct
    10801 tctacgtcgc gggcgggcgg aggcccgcgc aatttcacgg cacgggcgga cggacaatgc
    10861 gaatcaccga acttgacgcg ggcggggagc acgagctgct gctcgccggc tcggagcccg
    10921 agtcgggcta ccgaggcatc atagccatac acagcaccgc gctcggcccg gcggtaggcg
    10981 gcgcgcgctt ctggaattac gcgagcgagg cggaggccgt gaccgacgcc cttcgacttt
    11041 cgcgcggcat gacctacaag aacgcgctgg cgggcctgcc gctcgggggc ggcaagtccg
    11101 tcatcatcgg cgataacagg acgacggagc gcgaagtgat tttccgcgcg cacgggcgct
    11161 tcgtcgagtc tctgggcggg cgctacatca cggccgagga cgtggggacg agcccctccg
    11221 acatggtcat cgtgcgcgag gagacgagac acgtcggcgg cctgcccgac cgctcgggcg
    11281 acccctcgcc cgtcacggcg cacggggtct tccgcgcaat acaggcgtcg gcgcgcttcc
    11341 gccggggctc cggcgacctg cgcggcatgc gcgtggcgct gcaaggctgc ggccacgtcg
    11401 gctaccatct cgcgcgcgag ctgcacgagg ccggcgcccg tctcgtcgtc gcggacgcgc
    11461 acggggagcg cgcccgccgc gtggccgaag agttcgacgc cgaggtcgtc ggcacggatg
    11521 aaatctactc cgccgatacg gacgttctcg cgccgtgcgc gctcggcgcc gtgataaacg
    11581 acgcgaccat ccccctgctc agggccggga tcgtcgcggg cgcggccaac aaccaactgc
    11641 tcgaagcgcg ccacggcgac gcgcttgagc gccgcggcat actctacgcg cccgactacg
    11701 tcgccaacgc cggcggcatc atcaacggct gcatagagct tctcggctgg gaaccggcgc
    11761 gcgcacgccg gcaggtcgag gagatttacg acacgctact cgacatattc gagacggcta
    11821 gggccgaggg catcccgacc tacgcggccg ccgaccgcct cgccgaagag cggctcgccg
    11881 cggcgacgcc gcgcgggatc tgagtgatgg cgcgcaaacc gagattcgtc gtgcaggagc
    11941 accacgcgag ccacctgcac tgggacttcc ggctggagat aaccggcacg ctcaagagct
    12001 gggccgtgcc gaaggggcct tcgctcgacc cgtcggtgaa gcgcctggcc gtcgaggttc
    12061 cagaccacgc gctctcgtac ctcacgttcg agggagtgct gcccgaaggc acttacggcg
    12121 cggggcctgt gctccgctgg gacataggca cgttcgaccc gacgggcgac gcggccgagg
    12181 gttggcgcgc gggctctctg cgcttccggc tcgaaggctc gcggctgcgc ggcgagtggc
    12241 ggctcttccg catgaagggg cgcgggcagg gcgggcgccc gctctggctg ctgcaaaagg
    12301 ttgacgacga gttcgccgtc gcgggccacg aggcggaagt gatgggcgaa gctaagaagg
    12361 cggcgaagaa gcgtagggcc gtcaagtcgc ccgcggggaa gaagcgctcg aagtgagcgc
    12421 gccgtcgcgc acaagcccta cgcgctcgac gccgcgccac cactcgggcc agcgctccga
    12481 gccgtgaatc aaatcccaca cgggcgcgag cggcgccccg aatttccaga ccgtgacgaa
    12541 gttgtagtct gccatgccgg gccttatcgt gtacgtgcag cgcggtcggg cgaggcgcct
    12601 catccaagct cttacgcgcg cgggcgcggc cgcggatttt gagaagcagg ctggttgacc
    12661 ctgatgagcc ctgacaggag acggcacagg ggcgcgcacc cttcggacgc ggagttgttc
    12721 tcggagtcga gcctgcccgc gctcaggcgc gcgacctcgg agctttcgtg gctgctgagc
    12781 cgcggctacc aacagaagtc cgcggtgaag ctcgtgggcg accgccactc cctgcgcgag
    12841 aggcagcggc tcgccgtcgc gcgcgcggcg tgctctgatg caagcctcgc gcggagggcc
    12901 gcccgccgtc tgagcctcgg cgacgtgcgg ggcgccgact tgattgttga cggcttcaac
    12961 gtcgtcatcg cggtcgaggc ggcgctaggc ggcggcgtgc tcgtgcgcgg gcgcgacggc
    13021 tgcgtgcgcg acatgtcgag cgtccacggc tcctaccgcg cggtcgagga gaccgagcgg
    13081 gccgtgctgc tggtgggcga ggcgctcgaa gccctcgggc ctgcttcggc gctgtggctg
    13141 atagacaggc cggtgtcgaa cagcgggcgg ctggccgagc gcataaggcg gctcgccgcc
    13201 gagcgccgct ggccgtggga ggtcgcggta gagttcaacc cggacaggga gatagttggc
    13261 tccgggcgcg tcgccgtcac ctccgactcg aacgtgctcg acggcgcgcg gcgctgggtc
    13321 aacttaaacg agcacctggt cgagcgccac ctgccgagcg cgtgggtgat tgatttaagc
    13381 ggcgccgacg gttagtgagt ctgcttgtag agccgggcga ggcgttcgag cgtgtctgcc
    13441 tcgcgcgtgc tcttgtcggc gcgcacgcgc ttgaagcgcg ggatgcgcag cgcgtagccg
    13501 gagccgtagc ggttcgtctt ctgtatgtcc tggaaatcaa cctctatgac gacatcgggc
    13561 tcgagctcca cgtcgcgccc gcgggccgtg atgatcttcg gctcaagctg cgccgtcaac
    13621 gccttgagcg tctcctccga aaagcccgtg ccgaccttgc cgaccgtctt cagcccgtcg
    13681 cggtcgcgca cggagactat caaactcgac agaagcccgc gcctgcggcc ggagccccat
    13741 atgcctcccg tcacgaccac gtccagagtc tcgaaggccg gctttatctt catccagttc
    13801 tccgcgcgcc ggcccggcgt gtagggcgcg tcggggtctt tcgccatcag gccctcgtgg
    13861 ccctcggcta tggcgcgtcg gaagaagtcg gcctgctcga cggggctgtc ggtgacgacg
    13921 gcctcggtcg gcttcacgcg gtctgtcgtg cggaagagtt tggcgaggcg cgcgcgacgc
    13981 tccgactgcg ggaggctcat caagtcctcg ccgtcgtgat agaccatctc gaagaggtag
    14041 agcacgaagg gggtctcgcg cgccttctcc tcgacgccgt ggactcggcc cagccgcgtg
    14101 agcacggcct ggaacggctg cttgacctta agggaagggt cgaaggcgac ggcctcgcct
    14161 tcgagcacgg cgtcgccgcc cttccacgcc ttgcgcaaag cggcgacgag gtcgggcatc
    14221 gcggccgtgt cgtcgttcag gcggcgcgag tagaagcgaa tctcggacgg gcgccccttc
    14281 tttatatgaa tctgcaggcg cgcgccgtcg tacttgacct cgaagattat cttcttgccc
    14341 gcgaggcggc ggaagatttc ttcggggtcg tccatcttgt gcgcgttcat gaactggtag
    14401 ggacggaaga gcgagaggcc ggcgcgctcg agcgctcgct cgcccttgct cgcccgcgcg
    14461 gcgaccagcc cgaagtcgtt cgtcatggcg tagagccgat cgacgctcgc cgcgtcaacg
    14521 ccgaaggctt cggctatcgc gcgcgcgagc gtccccgtgc cgacgcccat cctcatctgc
    14581 ccgagcgcca tcctcgtgaa atacttcgac cccgtcggcg acgtgctccc gaagacggag
    14641 cggacgagcg aggcgcggtc ttcgccccgg ccgacggcgc ggttgaccat gcgccaaagc
    14701 tccgcgaccg tgagcgtgtc gcgcggccgg ccgacgagcg ctgccaccac ttcgctcatg
    14761 tcgcccgttc gcctcacctc atcgtctatc tccccggcct cccggcccga catctcggac
    14821 agcacggccc ctatcgtccc cggcccgatg cctagctcgt cggcggactg cggcgcgacc
    14881 agctcgccgg ccgtgaagtg cgcggccgct tcgagcgtgg gcgcgtccgc ctttctgaac
    14941 aggtctgcga gtatgcggcg gcgcgccggc tcgcccgccg ccgcggccac gcgctcgtaa
    15001 gctttcgcaa gtgctgagaa cttcatctct cctcgtttta gcgcccgggc agatttaacg
    15061 gcgagcccgc cgttgagcac gcaagttgca agcctaatgc gcgcgggcgg ctggtgacgg
    15121 cagggcgcga tggcgaagtc gaaaaaggcg cgtagattgg acgagcttgc cgggcaaata
    15181 aaggtttgca cgcgctgccc gctgcacgag tcgcgtacac acgctgtacc gggtgacggc
    15241 aagtacacgg cccgcgtgat gctcataggc gaggcgccgg gcagggaaga agacgagtcg
    15301 ggccacccct tcgtgggcgc ggccgggcgc tacctcgaca aggtgctcga aggcacaggg
    15361 atcgagcgcg gcgacctctt catcacgaac actgtgaagt gccggccgcc gaagaaccga
    15421 gtgccgaaga aattggaggt aggcacctgc acggcgaact acctgttcga gcagatgggg
    15481 ctgctcgcgc ccgacctcgt catgctcctc gggggcgtcg ccgcgaagac cgtgctcggc
    15541 gtcaagagcg tgagcgaggc ccgaggccgc gtaatcgagc gcgaagggcg gcggttcata
    15601 gtcggctacc acccggccgt gcgtttctac agggaagacc tcggcgcgaa ggtcaaggag
    15661 gacttcgcgc tgctcaggcg agagcttaag aagctttgag gcgttggcgg gaaagttctc
    15721 tgccgcctcg gcgcccccgg cgctctttgc gttctaattc ttaatttggg ggttcgcaaa
    15781 gggcgccggg cgggcggcgg gagcgactta agggagggat cgggcgagag tggcgacggg
    15841 gctagagacc tactggaaga tgcgcgactt caggcggacg cctgagccga agggtaaggt
    15901 gtcgcgcgcc aaccgccgcc gcttcgtcgt gcaggagcac cacgcctcga agctacactt
    15961 cgacttccgt ctggagatgg gcggcgtcct gaagtcctgg tctgtgccgc gcgggccttc
    16021 gctcgacccc gccgacaagc gcttggccgt gcagaccgag gatcacccgg tcgaatatct
    16081 gaagttcgag gggcagatac ccgaaggcga gtacggcgcg gggcgccaca tgaagtggga
    16141 cgatgggact tacaggccga cgggcgaagg cagcgcgctc gaacagctcg aagccgggcg
    16201 cctgacgttc gagctgaagg gcaagaagct gagcggcgag ttctctctca tacagatgaa
    16261 ggggcgcggc gagggccagt ggctgctgat aaagaagcag gacgagtttg ccgagccggg
    16321 ctgggcacta gagcttcgcg agcctgttga cggcaagcgg gtgctcgaag agaagtcgaa
    16381 ggcgaaaaag cagccggcgg ccggggcggc cgccaaaagt tcttcggcgc gcgcgggcgt
    16441 gcggaaagtt ggcacgcgtg ccggggcgag cggcgagaag gtcgtgccgg ccgcgcgcgc
    16501 gctgaaggcc aaaaagctgg gcggcgaccg gcccgtccgc gtcggccgcg acgtggttca
    16561 cttgaccagc ctcgaccgcg tctattggcc cgacgaaggc atcacgaagg gcgagctaat
    16621 ccgctactac tacgaaatct ccgagcacat cctgccgcac ctgaagggcc ggccgctgat
    16681 tatgaagcga taccctttgg gcgtccgcgg gcagttcttt catcagcacg acgtgaacga
    16741 ggttcccgag ttcgtgcgaa ccgtcacgct cgaagtagag gagggcggcc acacggttga
    16801 ctacatcgtc ggcgacaacc gcgcgacgct cctctacatg gcgaacctcg gcgccatcga
    16861 gcgccacccc ttccactcgc gcgtggccga cctcgaccgc ccggactgga tggtcttcga
    16921 cctcgacccc ggcgagggcg tcgaatttga gaccatctgc cggctcgccg tcgccgtccg
    16981 cgaggtgctc gcgcggctcg gcctcgaagg ccacccgaag acttccggct cgcgcgggct
    17041 gcacgtctac gtgcccttcc gcgcggagta cgaatacgag cgcgtggcgg agttcgccga
    17101 gcgggtggcg accgtcgtcg cgcgcgagca cgcggaggtg gcgaccgtcg agcgcagtct
    17161 gaagaagcgc cggcgcgggc agatttacgt cgaccacatg cagaacgcga agggcaagtc
    17221 ggtggtcgcg ccctactcgg tgcggccgcg cgagggcgcg accgtctcgg ccccgctcga
    17281 atggggcgag gtcgagcgcc ggcgcatcac gccgcgcgac ttcaccatca agaacatcct
    17341 ccgccgcatc cggagccggg gcgacctgtt caagccggtg ctggcgggca gacaaaaact
    17401 cgacgacgcg ttcgaggcgg cgcgcgagct gctcagggag aagcgcgcgc ggcgcgctcg
    17461 cgcctgattc gacgcgccgg gggcgggaga gcaaaaggcc ataacaagag ctgattcaag
    17521 gagggcagag acgatggcag gtaaaacgag cgaccgcgag tcgatcgaca cgggcaccga
    17581 caagcgctac gtgaggcgcg acgagaaggg ccagtttaag gagagcgatg acacgggccg
    17641 ctcgctccgg caggacgtca agcaggaggc caagacgaag gtcaagtcgg ggcagggcga
    17701 ccgcggcgac cagaaacgta aatgagtttc gcgccgcggg tcgcggggcg cgggtgcgtg
    17761 ccgggcgaat cgaaaggcac gaaccgcgcc cccgaactcg ggccccgcaa cccgcggcgc
    17821 gaaacttgag cgcagcgaac gaaggaggtt gacatca
//
LOCUS       DASPKR010000270         8591 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1715351, whole genome shotgun sequence.
ACCESSION   DASPKR010000270 DASPKR010000000
VERSION     DASPKR010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8591)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8591
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1715351"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..320
                     /locus_tag="VD968_07565"
     CDS             <1..320
                     /locus_tag="VD968_07565"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HYE14280.1"
                     /translation="PAPKAEQTAAPKTPVSGGVLNSKAVALPRPVYPPAAKSVGVYGK
                     VVVEVTINEEGKVVEARAVSGHTLLRAAAVTAARQARFSPATLSGQPVKVTGTISYNF
                     AQP"
     gene            complement(404..2320)
                     /locus_tag="VD968_07570"
     CDS             complement(404..2320)
                     /locus_tag="VD968_07570"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HYE14281.1"
                     /translation="MLFRLSDVFKSYGSQDVLRGASFQLNPGEHVGLVGRNGAGKTTL
                     FRLITGEETPDRGDVVRARGLRLGLLEQHVDFEPGTTVHEAALAAFENLQRIEHEMHQ
                     LEHRMAEAPDDLDKVLERYSELQHEFERQGGFEYAARAEAILQGLGFERNTWGMPSEI
                     LSGGQKNRLGLARLLLAEPDVLLLDEPTNHLDVAAVEWLEEFLSSYKSAYVIISHDRY
                     FLDRACTRIIEVELGKTVSYTGNYSAFLVEREERREAQQRAYENQQHLIAKTEEFIRR
                     NLAGQKTKQAKSRRNMLARMERLESVRPDQSSGDFRLQKVERAGTHVLTAKEAAVGYP
                     GKLLAADISLILKRGECLGVIGPNGSGKTTFVKTVLGKLPPLGGEIRWGANVSVGYYA
                     QQLDDLDERNEIIMELRRVAAPSATAGELRSFLAKFLFTGDDVYKLVRDLSGGEKGRL
                     ALAKLIYSRVNVLVLDEPTNHLDIPSREALEEALDAYDGTIITISHDRYFLDRVATQI
                     LALDGQGGADHYDGDYTEYHDWKARLRAEEAAREREEAAPKPKGAPAKPQAKGGREPK
                     KGRPVRAPQLVEEEIAGAEKRLEELTAEMATPEAARDPARLARLNEEYRRADERLREL
                     YEEWERVVAEAASA"
     gene            complement(2440..3642)
                     /locus_tag="VD968_07575"
     CDS             complement(2440..3642)
                     /locus_tag="VD968_07575"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HYE14282.1"
                     /translation="MHKVAKQIAAVILAATSALAFAACKGSGATGGGGGTDVAATVNG
                     KNIMLSEVDRIISQQTRGQQSKMSPIQLAAARLQVLDRLIERQVLVQRAEKEKTVPTD
                     DELTASINTRRNSFTAEEWAKNLKDNNLTEEQLRDEARKDLAVQKLQEKHFGKITIRD
                     QEIVDFYNANREQFVNPRGVFLSDIVADPRDNGLPSDDARSDADAKAKIDRLHAQLRG
                     GADFATVARASSEDASAIRGGDIGFANEQDLQQNGFSPDLINRFFNVMKVGDVTEPIR
                     FPDGRWIIFKLTNRQLETKPLALEDPGVRDQIKQALNNQRQTLLGEALIRNAMSDAQI
                     VNNLAANMLTDPSSLGGLHPAGSASPAATTEATPAAAASPSPAATAAGATTGASGANT
                     STASPERK"
     gene            3821..4015
                     /gene="rpmB"
                     /locus_tag="VD968_07580"
     CDS             3821..4015
                     /gene="rpmB"
                     /locus_tag="VD968_07580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014398134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HYE14283.1"
                     /translation="MAKRCEVCGKGPQFGNNVSHANNRTRRRFDPNLQSIRVQRPQGG
                     NTRMKVCTSCIKAGKVTKAA"
     gene            complement(4127..4522)
                     /locus_tag="VD968_07585"
     CDS             complement(4127..4522)
                     /locus_tag="VD968_07585"
                     /inference="COORDINATES: protein motif:HMM:TIGR00004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HYE14284.1"
                     /translation="MGETVRRTVATEEAPKAIGPYSQAIVAGGFVFASGQIPLDPSTG
                     EFVAGGVAEQTGQVLRNLSKVLEAAGTGLAGVVKTTVFLADMNDFAAMNEVYASFFPD
                     SPPARSTVQAAGLPRGARVEIDAIALAGQ"
     gene            complement(4721..6919)
                     /locus_tag="VD968_07590"
     CDS             complement(4721..6919)
                     /locus_tag="VD968_07590"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HYE14285.1"
                     /translation="MIRIEEIVEKVGRNHPQADLDLLRRAYIFSALHHKGQTRASGEP
                     YLVHPLEVANILADMRLDETAVATGLLHDVVEDTLVELDVIRHSFGEEIAHLVDGLTK
                     IAQISDKSKDEQQAENVRKMLLAMVDDVRVVLVKLADRLHNMRTLQFLKPDKRKRIAQ
                     ETLDIFAPIAHRLGMGRLRGELEDLAFKHLHPEEYRELSEQLEARRPEHEAFLREVTA
                     RIQEKVREAELPVVSVEGRVKRLYSIFKKLRRQRITLDQVYDLIAARVVTPDEERYCY
                     AVLGIVHNIWQPIPGRFKDWIATPRDNLYQSLHTSVIGSKGQPFEIQIRTEEMHRIAE
                     EGVAAHWKYKEGRRGAHDDDEAFKWLRSLIEWSQEVKDSRDFLESLKLDLYPKDVYAF
                     TPAGKVIQLPRGATPVDFAYMIHTEVGNTCTGARVNGRIVPLRTPIQNGDKVEILTSP
                     NSHPSRDWLNFVKTSRARNRVRHWVAEQQRAESIELGRKLFEKEASRFNLSAKKILGD
                     GNGEFKRIANEYGYGRPDDLLAAIGYGKIIPRNVVAKYVGPEKFAELEQKKDSALRSR
                     VNAGVQAVKKLIRLGEDSIVVRGVDDLLVVRARCCSPVRGEEIVGYITRGKGVTVHAR
                     RCKNVQSLMVNPERVVEVEWAGSSDQSAYAVKLLAITENRTGMIAGITGAIADIKTGI
                     RDARAAIASDNRGRIEVTVEVFDVKHLDKVMSSIRKVPGVLDVERIQGAA"
     gene            complement(7116..7955)
                     /locus_tag="VD968_07595"
     CDS             complement(7116..7955)
                     /locus_tag="VD968_07595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14286.1"
                     /translation="MKLSRTSTVTLLLLLVATSAGCGVINRIRAKNALNEGARAYREG
                     QFTQAEEKFRRAFELDPTQKNAPLFIARAVQQQYKPGVASPENVATGQRAIQAYQDIL
                     NRDPRNEDAYKAIVFLYGQMKEEDKVRQMLTQRASMTDIPESKRAEALTILASKQWQC
                     SYDTTEQKDNKTTEGNVVKYKKPANQADFDKAKGCVAEGMRLVEQAISLDQNNANAWS
                     YKANLLREQSKLAEMDGNAQQKQEFDRLYDQARETHARLSEEAQKRKEAEEAAKSPTP
                     PAS"
     gene            complement(8080..>8591)
                     /locus_tag="VD968_07600"
     CDS             complement(8080..>8591)
                     /locus_tag="VD968_07600"
                     /inference="COORDINATES: protein motif:HMM:NF014525.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HYE14287.1"
                     /translation="MGMSSGGGGTGAKPDINVTPLIDILLVLLIIFMVITPLKPTRFK
                     TLVPERSEEMSAQAKQSPRTLIVTIAKDQKVELIRGGNKIADGAVADTAPIASRLAAE
                     FKERKEQGIFKEGMESRADLPPDEKIERTVFVKAPTTFKYGDVVKVIDAIKGAGANPV
                     GLQTEALEP"
BASE COUNT         1233 a         2739 c         2916 g         1703 t
ORIGIN      
        1 cgccggcgcc gaaggccgag cagactgccg cgccgaagac gccggtctcg ggcggcgtgc
       61 tcaacagcaa ggccgtcgcg ctgccccggc ccgtctatcc tccggccgcg aagagcgtcg
      121 gtgtttacgg caaggtcgta gtcgaggtga cgattaacga ggagggcaag gtcgtcgagg
      181 cgcgcgccgt gtcgggccac acgctcctgc gcgccgcggc cgtaaccgcc gcacgtcagg
      241 cgagattttc accagccacg ctctcgggcc agcccgtgaa agtcacaggc actattagct
      301 acaacttcgc ccagccctga gcctttcgcg taattaacga aagggcgttg acgacagcag
      361 agctgtcgtc aacgcccttt cggcctgtag cacggcggcc gtctcaggcg ctcgcggcct
      421 cggcgacgac gcgctcccac tcttcgtaga gttcgcgcag gcgctcgtcc gcccttcggt
      481 actcttcgtt gaggcgcgca agccgcgccg ggtcgcgcgc ggcctcgggc gtcgccatct
      541 ccgcggtcaa ctcttcgagc cgcttctccg ccccggcaat ctcctcctca accaactggg
      601 gcgcgcgcac cggccggccc ttcttcggct cgcggccgcc cttcgcctgc ggcttcgcgg
      661 gcgcgccctt cggtttgggg gccgcctcct cacgctcgcg cgcggcctcc tcggcgcgca
      721 gccgcgcctt ccagtcgtgg tactcggtgt agtcgccgtc gtagtgatcg gcgcccccct
      781 gcccgtcgag cgcgagtatc tgcgtggcga cgcggtcgag gaagtagcgg tcgtggctga
      841 tggttatgat ggtgccgtcg taggcgtcga gcgcctcttc cagtgcctcg cgcgagggga
      901 tgtcgaggtg gttcgtcggc tcgtcgagga cgaggacgtt gacgcgcgag tagatgagct
      961 tggcgagggc gaggcggccc ttctcgccgc ccgagaggtc gcgcacgagc ttgtaaacgt
     1021 cgtcgcccgt gaagaggaac ttggcgagga acgagcgcag ctcgccggcc gtggccgagg
     1081 gcgcggccac gcgcctgagc tccatgatta tctcgttgcg ctcgtcgagg tcgtctagct
     1141 gctgcgcata gtagccgacc gagacgttcg ccccccacct gatctcgcct ccgagcggcg
     1201 gcagcttccc cagcacggtc ttgacgaagg tcgtcttgcc cgagccgttt gggccgatga
     1261 cgccgaggca ctcgccgcgc ttgagtatga gagagatgtc tgcggcgagg agcttgccgg
     1321 ggtagccgac cgcggcctcc ttcgccgtga ggacgtgcgt gcctgcgcgc tcgaccttct
     1381 gcaagcggaa gtcgcccgag gactggtcgg gcctgacgga ctctaggcgc tccatgcgcg
     1441 cgagcatgtt gcggcgcgac ttggcctgct tggtcttctg gccggcgagg ttgcggcgta
     1501 tgaactcctc agtcttggcg atgaggtgct gctggttctc gtaggcgcgc tgctgcgcct
     1561 cgcgccgctc ctcgcgctcg acgaggaagg ccgagtagtt gcccgtgtag ctgaccgtct
     1621 tccccaactc gacctcgatg atgcgcgtgc aggcgcggtc gaggaagtag cggtcgtggc
     1681 tgatgatgac gtaggccgac ttgtaggagg agaggaactc ttcgagccac tcgacggccg
     1741 cgacatcgag gtggttcgtc ggctcgtcca ggagcagcac gtcgggctcg gcgagcagca
     1801 ggcgcgcgag ccccaggcgg ttcttctgcc cgccggagag aatctccgaa ggcatgcccc
     1861 aggtgtttcg ctcgaagccg aggccctgca ggatcgcctc ggcgcgcgcg gcgtactcga
     1921 agccgccctg ccgctcgaac tcgtgctgaa gctcgctgta gcgctctaag accttgtcga
     1981 ggtcatcggg ggcctcggcc atgcggtgct cgagttggtg catctcgtgc tcgatgcgct
     2041 gtaagttctc gaaggcggcg agcgccgctt cgtggacggt cgtcccgggc tcgaagtcaa
     2101 cgtgctgctc taacaggccg agccgaaggc cgcgcgcgcg cacaacgtcg ccgcggtcgg
     2161 gcgtctcctc gccggtgatg agccggaaga gcgtagtctt cccggcgccg ttgcggccca
     2221 cgaggccgac gtgctcgccg gggttgagct ggaacgacgc gccgcgcaga acgtcctgcg
     2281 agccgtagga cttgaaaacg tcggagaggc ggaacagcat aaaagtcggg gcgccggccg
     2341 ggcggccggc caagcgccga agcgggcacg ggcgcttcgg cttgccggag cttccgtacc
     2401 cgcttcagat ttcacaccgc cggggaggcg cccgcccggc tacttcctct cgggcgaggc
     2461 tgtcgaggtg ttggcgccgc tcgccccggt cgtagccccc gcggccgttg ccgcgggcga
     2521 aggcgaggcc gctgcggcgg gtgtcgcctc cgtagtggcc gcggggctgg cggagccggc
     2581 cgggtgcagg ccgcccaggg agctcgggtc ggtcagcatg ttggcggcga ggttgttgac
     2641 gatctgcgcg tcgctcatgg cgttgcgtat gagtgcctcg ccgaggagcg tctggcgctg
     2701 gttgttgagc gcctgcttga tctggtcgcg cacgccgggg tcttcgagcg cgagcggctt
     2761 ggtctccagc tggcggttcg tcagcttgaa gattatccag cggccgtcgg ggaagcgtat
     2821 gggctcggtg acgtcgccga ccttcatcac gttgaagaag cggttgatga ggtcgggcga
     2881 gaagccgttc tgctgcaagt cctgctcgtt ggcgaagcct atgtcgccgc cgcggatggc
     2941 gctggcgtcc tcgctgctgg cccgtgcgac ggtggcgaag tcggcgccgc ccctgagctg
     3001 cgcgtggagg cggtctatct tcgccttggc gtcggcgtcg ctcctggcgt cgtcggaggg
     3061 caggccgttg tcgcgggggt cggcgacgat gtcggagagg aagacgccgc gagggttgac
     3121 gaactgctcg cggttggcgt tgtagaagtc aacgatctcc tggtcgcgga tggttatctt
     3181 gccgaagtgc ttctcctgta gcttctgcac ggcgaggtct ttgcgcgcct cgtcgcggag
     3241 ctgctcctcg gtcaggttgt tgtccttgag gttcttcgcc cactcctcgg ccgtgaacga
     3301 gttcctgcgc gtgttgatag aggccgtcaa ctcgtcgtcg gtcgggactg tcttctcctt
     3361 ctcggcgcgc tgcacgagaa cctggcgctc gatcagcctg tcgagcacct gtaggcgggc
     3421 cgccgcgagc tggatgggcg acatcttcga ctgctgcccg cgcgtctgct ggctgatgat
     3481 gcggtcaacc tcgctcagca tgatgttctt gccgttgacg gtggcggcca cgtccgtgcc
     3541 gcccccgccg cccgtggctc cgctgccctt gcaagcggcg aaggcgagcg cggaggttgc
     3601 tgcgaggatg actgctgcga tctgtttggc tactttatgc actgaagctt cctgctcctt
     3661 ctcgactgcc tttaattgtt tcggccgaaa acggcccggc catggcccca acttgacgct
     3721 gcgcgaaacg gtttgctata agttttcgtt tcggaagcgc gcggcggccg ccaccttgtg
     3781 cccactggcg cgccttttta actgcccgga ggtatcaaac atggctaaaa gatgcgaagt
     3841 ctgcggcaag gggccgcagt tcggcaacaa cgtctcgcac gcgaacaacc gcacgcgccg
     3901 ccgcttcgac ccgaacctgc aatccatacg agtccagcgg ccgcaagggg gcaacacccg
     3961 catgaaggtt tgcacctctt gcatcaaggc gggcaaggtc acgaaggccg cctaagaacc
     4021 tttcacgacc tgctggtctt caaagacggc gggcgcacgg gttaaacgag cccgcgcccc
     4081 gcttttcttt tgccctctcg cgggcctttc atcaaagaac tgccgcttac tgcccggcga
     4141 gcgctatggc gtctatctcg acgcgcgcgc cgcgcgggag ccccgccgcc tgaaccgtcg
     4201 agcgggccgg cgggctgtcg gggaagaagc tggcgtaaac ctcgttcatc gccgcgaagt
     4261 cgttcatgtc ggccagaaag actgtcgtct tgacgacgcc cgcgagccct gtgccggccg
     4321 cttccagcac cttagagagg ttgcgcaaga cctgcccggt ctgctcggcg acgccgcccg
     4381 cgacgaactc gccggtcgag gggtcgagcg ggatttggcc cgaggcgaag acgaagccgc
     4441 cggccacgat tgcctgagaa tacggcccga tggccttcgg cgcctcttcc gtcgcgacgg
     4501 ttcgcctcac agtctcgccc accctttttt ccaatcctcg aacaaactgc gcattctacc
     4561 agacgccctt cccgcacggc aaacggggaa gcggtcagcc gccagctatc agcactcagc
     4621 tttttgcgcg tcttgatttg attgatgctt ttaaaccggg aagtagatgc ttcgccctta
     4681 gcggagaaca gtcggtggga attcccggac gccagcttct ttacgccgcg ccctgtatgc
     4741 gctccacgtc gaggacgccg gggacttttc gtatggagga catgaccttg tcgaggtgct
     4801 tcacgtcgaa gacttctacc gtgacttcga tccgcccgcg gttgtctgag gcgatggcgg
     4861 cgcgcgcgtc ccgtatgccc gtcttgatgt cggcgatggc gccggtgatg ccggcgatca
     4921 tccccgtgcg gttctcggtt atcgcgagga gcttgacggc gtaggcggac tggtcggagc
     4981 ttcccgccca ctcgacctcg acgacgcgct cgggattgac catgagcgac tgcacgttct
     5041 tgcagcggcg ggcgtgaacc gtgacgccct tgccgcgcgt gatgtagccg actatctcct
     5101 cgccgcggac ggggctgcaa cagcgcgcgc gaacaactag gaggtcgtca acgccgcgga
     5161 cgacgataga gtcctcgccg agccgtatga gcttcttgac ggcctgcacg cccgcgttga
     5221 cgcggctgcg tagcgccgag tccttcttct gctcgagctc ggcgaacttc tcggggccga
     5281 cgtacttggc tacgacgttg cgcgggatta tcttgccgta gccgatggcg gccagcaggt
     5341 cgtcgggccg cccgtagccg tactcgttcg cgatgcgctt gaactcgccg ttgccgtcgc
     5401 cgaggatttt tttcgccgag aggttgaagc gcgacgcctc cttctcgaag agcttgcgcc
     5461 ccagctcgat tgattcggcg cgctgctgct cggcgaccca gtggcgcacg cggttgcgcg
     5521 cgcgcgaggt cttgacgaag ttgagccagt cgcgcgaagg gtgcgagttc gggctcgtga
     5581 gtatctcgac cttgtcgccg ttctgtatgg gcgtgcgcaa ggggacgatg cggccgttga
     5641 cgcgcgcgcc cgtgcaggtg ttgccgacct ccgtgtggat catgtaggcg aagtcaacgg
     5701 gcgtggcgcc gcgcgggagc tgtatgacct tgccggcggg cgtgaaggcg taaacgtcct
     5761 tcgggtagag gtctagcttg agggactcca gaaagtcgcg cgagtccttg acctcctgcg
     5821 accactcgat gagcgagcgc agccacttga acgcctcgtc gtcgtcgtgc gcgccgcggc
     5881 gcccctcctt gtacttccag tgcgcggcga cgccctcctc ggcgatgcgg tgcatctcct
     5941 cggttcttat ctgaatctcg aagggctgcc ccttcgagcc gatgacggag gtgtggagcg
     6001 actggtaaag gttgtcgcgc ggcgtggcta tccagtcctt gaagcggccc ggtatgggct
     6061 gccagatgtt gtgaactatg ccgagcacgg cgtagcagta gcgctcctcg tcgggcgtga
     6121 cgacgcgcgc ggcgatgagg tcgtaaacct ggtcgagcgt gatcctctgg cgccgcagtt
     6181 ttttgaagat ggagtagagg cgcttaacgc gcccctcgac gctgacgaca ggtagctcgg
     6241 cctcgcgcac cttctcctgt atgcgcgccg tcacctcccg caggaacgcc tcgtgctcgg
     6301 gccggcgggc ctcgagctgc tcggacagct ccctgtactc ctccgggtgc aggtgcttga
     6361 aggcgaggtc ttcgagctcg ccgcgaaggc ggcccatgcc gaggcggtgg gcgatgggcg
     6421 cgaagatgtc gagggtctcc tgggcgatgc gcttgcgctt gtcgggcttg aggaactgaa
     6481 gcgtgcgcat gttgtggagc cggtcggcga gcttgacgag gacgacgcgc acgtcgtcaa
     6541 ccatcgcgag cagcatctta cgcacgttct cggcctgctg ctcgtccttc gacttgtcgc
     6601 ttatctgcgc gatcttcgtg agcccgtcaa cgaggtgcgc tatctcctcg ccgaacgagt
     6661 ggcgtatcac gtcgagctcg acgagcgtgt cctcgaccac gtcgtgaaga agcccggtgg
     6721 cgaccgccgt ctcatcgagc cgcatgtcgg cgaggatgtt ggcgacctca agggggtgga
     6781 cgaggtacgg ctcgccggag gcgcgcgtct gccccttgtg gtggagcgcc gagaagatgt
     6841 aggcgcgcct gagcaggtcg aggtcggcct gcgggtggtt gcgccccacc ttctcgacta
     6901 tctcttcgat gcggatcata agaagaagcc gtcagcggtc acccttcagc ctcacaattt
     6961 gatgaaatga aagccctttg ctttgccact cgccgatggc agagacaaaa gctgacggcc
     7021 gaccgcttat tgctgacaga tattataaga aaggtgatgc ccggcgggaa gccgagcatc
     7081 acccggaagt ctcaggtact gtcaggcgcg gcgccttagc tggcgggcgg ggtcggggac
     7141 ttggcggcct cctcggcctc cttcctcttc tgcgcctcct cgctcaggcg ggcgtgggtc
     7201 tcgcgggcct ggtcgtagag cctgtcgaac tcctgcttct gctgcgcgtt gccgtccatc
     7261 tcggccagct tcgactgctc gcgcagaagg ttcgccttgt acgaccacgc gttggcgttg
     7321 ttctggtcga ggctgatggc ctgctcgacg agcctcatgc cctcggcgac gcagcccttg
     7381 gccttgtcga agtcggcctg gttcgccggc ttcttgtact tgacgacgtt gccctcggtc
     7441 gtcttgttat ccttctgctc ggtggtgtcg taggagcact gccactgctt gctggcgagt
     7501 atggtgaggg cctcggcgcg cttcgactcg ggtatgtcgg tcatgctcgc gcgctgcgtg
     7561 agcatctgcc gaaccttgtc ctcctctttc atctggccgt agaggaagac tatggccttg
     7621 tacgcgtcct cgttgcgcgg gtcgcggttg agtatgtcct ggtaggcctg tatggccctc
     7681 tggcccgtgg cgacgttctc cggcgaggcc acgcccggtt tgtactgctg ctgcacggcg
     7741 cgcgcgatga agagcggcgc gttcttctgc gtcgggtcga gctcgaaggc cctgcggaac
     7801 ttctcctccg cctgggtgaa ctggccctcg cggtaggccc tggccccctc gttcagggcg
     7861 ttcttcgcgc gaatcctgtt aatgacgccg caccccgcgg aggtcgcgac caggagcagg
     7921 agcagcgtga cagtgctggt tcgagagagt ttcattggat gatggctccg cgtagagaca
     7981 attccgtttg cgaaaggggg ctcgggcgcc agacgacgcg cgccgctccg gccctccggg
     8041 cgggcggcgg cgcacgcttc ccactaaggc gccctcactc tatggctcga gcgcctcggt
     8101 ctggaggccg acggggttgg cgcccgcgcc cttgatggcg tcaatgacct tgaccacgtc
     8161 gccgtacttg aatgtggtgg gggccttgac gaagaccgtc ctctcgatct tctcgtcggg
     8221 cggcaggtcg gcgcgcgact ccatgccctc cttgaagatg ccctgctcct tgcgctcctt
     8281 gaactcggcg gccagtcgcg acgcgatggg ggcggtgtcg gcgaccgcgc catcggctat
     8341 cttgttgccg ccgcgtatga gctcgacctt ctgatccttg gcgatggtga cgatgagggt
     8401 gcgcgggctc tgctttgcct gcgcgctcat ctcctcgctg cgctcgggga cgagcgtctt
     8461 gaagcgggtc ggcttgagcg gcgtgatgac catgaagatg atcagcagca ccagcaggat
     8521 gtcaatgagc ggtgtgacgt tgatgtccgg cttggcgccg gtgccgcccc cgcctgaact
     8581 cattcccatg a
//
LOCUS       DASPKR010000271         3318 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1459136, whole genome shotgun sequence.
ACCESSION   DASPKR010000271 DASPKR010000000
VERSION     DASPKR010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3318)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3318
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1459136"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..827)
                     /locus_tag="VD968_07605"
     CDS             complement(<1..827)
                     /locus_tag="VD968_07605"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE14288.1"
                     /translation="MRKNSSFAAVLLMLFAAAAAAHAQTTTSTLTGVVRDVNAAVIAG
                     VEVRARQIETGLARSAVTDAEGRYTFPGLPVGSYELSAEKGGFQRYVSDRITLTVNET
                     ATLDIELKIKGLEEETVTVSDETALVNTQTPELSYLVGERSIRELPLNGRNYTDLALL
                     QPGVIAYPHRDGGSVVAHGLGISINGQDPRSNVFLLDGTPQNDFTNGPAGSAAGTVLG
                     LEAIREFRVETNAYSAEYGRNSGGQISAVSKSGTNAFHGSLYEYHRNDNLDARNFFDP
                     "
     gene            1080..>3318
                     /locus_tag="VD968_07610"
     CDS             1080..>3318
                     /locus_tag="VD968_07610"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE14289.1"
                     /translation="MTPKKPAARLLPAAALLLMLALAASAQTHRASLRGTVYDPNGAA
                     VAGASVRLTNVETGETRVAASDASGEYAVSSLRPGNYQLEVELKDFSKYVERLTLSVN
                     EERRADVHLAILRLEEQVVIDSTLAAPLKTDSASLGTVIENRQVEGLPLDGRNFFELA
                     LLVPGAAPPAQGSAGSVRGDFAFSVNGAREDSNNFLLDGVYNVDPKLNTFGVRPPVDA
                     IREFETATSTYDAAFGRSGGAQVNVVTKSGANEFHGSLFEFHRNAALDARNYFAPASE
                     PAPKYIRNQFGGAVGGRIVRDRTFFFADYEGTRSREGITRVTNVPTLAERSGDFSQSL
                     LGRPFNPFVGAPFAGGIIPQEFQHPVGRAIAALYPLPNRAAPFANFVSSPTQADDNDH
                     FDARVDHVLGDASTLAFRYSFGDRRLYEPFAGPAFAAVPGYGNDVLRRSQNAMASYTR
                     VFSPALVNDARVAFGRVASAVLQENRAASVNRRVGLPDLSQNPRDFGLSFITVTGFSP
                     LGDEYNNPQNSVTNTYQLLDTATYSRGSHLWKFGADVRLVQQNAFRDVQARGFLQFSP
                     FAYTGVALADLLLGLPTVTGGARVDNAQHLRTESYHFFANDSFRLTPRLTLSAGLRYE
                     YNSPPVDAEDRANLYDFATRSLVRVGTAGMPRAGYEADRNNFAPRVGLAWTLGEEGET
                     VLRAGYGVYYDTSPLAPSEALYFNAPFFDFNLFFPLPGLPLTVTDPFPSFFPVQLPDA
                     AQAIQR"
BASE COUNT          510 a         1183 c         1042 g          583 t
ORIGIN      
        1 gggtcgaaga agttgcgcgc gtcgaggttg tcgttgcggt ggtactcgta gagcgagccg
       61 tgaaatgcgt tcgtccccga cttcgacacg gcgcttatct gcccgcccga gttgcggccg
      121 tactcggcgc tgtaggcgtt cgtctcgacg cggaactcgc gtatggcctc aaggccgagc
      181 acggttcccg cggcgctgcc cgcggggccg ttcgtgaagt cgttctgcgg cgtgccgtcc
      241 aggaggaaga cgttagagcg cgggtcttgc ccgttgatgc ttatgccgag cccgtgggcg
      301 acgacggagc cgccgtcgcg gtgcgggtag gcgatgacgc cgggctgtag gagcgcgagg
      361 tctgtgtagt tgcggccgtt caagggaagc tcgcgtatgg agcgctcgcc cacaaggtag
      421 ctcagctccg gcgtctgtgt gttgacgagg gcggtctcgt ccgagaccgt cacggtctcc
      481 tcttcgagcc ccttgatctt caactctatg tcgagcgtgg ccgtctcgtt gacggtgagc
      541 gtgatgcggt cggagacgta gcgctggaag ccgcccttct cggcgctcag ctcgtaggag
      601 ccgacgggca ggcccgggaa ggtgtagcgc ccctcggcgt ccgtcacggc cgagcgggcg
      661 aggcccgtct ctatctggcg cgcgcgaacc tccacgccag caatcacggc ggcgttcacg
      721 tcgcgcacga cgcccgtcag cgtgctcgtc gtcgtctgcg cgtgggccgc cgcggcggcg
      781 gcgaaaagca tcaagaggac ggcggcgaag gaggaatttt tacgcatgat taccttttgt
      841 cactccgtag tgcggagggc tgtcccgcga gtgtttatac tctacattct atcaggcggt
      901 ttcagcgagc cgggcggaaa tccggcgccg cttttacaag gttgacagcc gggccgattc
      961 ttttacacca tctttacaaa cggcgggccg gtttcgacga taattgccga acaattagaa
     1021 cgggcggtcg tttctttttg ttgcctgtct ttcgcgatta atccagagga gaatccgtct
     1081 tgactccgaa aaagccagcc gcccggctcc tgcccgccgc ggccctcctg ctcatgctcg
     1141 ccctcgcggc ctcggcccag acgcaccgcg cgtcgctgcg cggcaccgtc tatgacccga
     1201 acggcgcggc cgtcgcaggc gcctccgtca ggctaacgaa cgtcgagacg ggcgagacgc
     1261 gcgtcgccgc cagcgacgcg tcgggcgagt acgccgtctc gtcgctgcgc cccggcaatt
     1321 atcaattgga ggtcgagctt aaggacttct cgaagtacgt cgagcgcctg accctctcgg
     1381 tcaacgagga gcgcagggcg gacgttcacc tcgcgatact caggctcgag gagcaggtcg
     1441 tcatagactc gacgctcgcg gcgccgctca agaccgactc ggcctcgctc ggcaccgtta
     1501 tagagaaccg gcaggtcgag gggctgccgc tcgacgggcg taacttcttc gagctggcgc
     1561 tcttagtccc cggcgcggcg cctcccgcgc aaggctccgc cgggtcggtg cgcggcgact
     1621 tcgccttctc cgtcaacggc gcgcgcgagg actcgaacaa cttccttctg gacggcgtct
     1681 ataacgttga cccgaagctc aacaccttcg gcgtgcggcc gcccgttgac gccatacgcg
     1741 agttcgagac cgcgacctca acttacgacg ccgccttcgg ccgcagcggc ggcgcgcagg
     1801 tcaacgtcgt aacgaagtcg ggcgccaacg aattccacgg ctcgctcttc gagttccacc
     1861 gaaacgccgc gctcgacgcc cgcaactact tcgcgcccgc ctcggagccg gcgcccaagt
     1921 acatacgcaa ccagttcggc ggcgcggtcg gcggccgcat cgtccgcgac cgcaccttct
     1981 tcttcgccga ctacgaaggc acgcgctcgc gcgaaggcat cacgcgcgtc acgaacgtcc
     2041 cgacgctcgc cgagcgctca ggcgacttct cgcagagcct cctgggccgg ccgttcaacc
     2101 ccttcgtcgg ggcgccgttc gccggcggca tcattccgca agagttccag caccccgtag
     2161 gccgcgccat cgccgcgctc taccctctgc cgaaccgcgc ggcccccttc gcaaacttcg
     2221 tctcctcgcc cacgcaggcg gacgacaacg accacttcga cgcgcgcgtt gaccacgtcc
     2281 tcggcgacgc ctccacgctc gccttccgct acagcttcgg cgaccgccgt ctgtacgagc
     2341 ccttcgcagg cccggcgttc gcggccgtcc ccggctatgg caacgacgtg ctgcgccgca
     2401 gccagaacgc tatggcgagc tacacgcgcg tattctcgcc cgcgctcgtg aacgacgcgc
     2461 gcgtcgcctt cgggcgcgtc gcgtcggccg tgcttcagga gaaccgcgct gcgagcgtca
     2521 accgccgggt gggcctgccc gacctttctc agaacccgcg cgactttggc ctgagcttca
     2581 tcaccgtcac gggcttctcg ccgctcggcg acgagtacaa caacccgcag aacagcgtaa
     2641 ctaacaccta tcagctcctg gacacggcga cctactcgcg cgggagccac ctatggaagt
     2701 tcggcgccga cgttcggctc gtccagcaga acgccttccg cgacgtgcag gcgcgcggct
     2761 tcctgcagtt ctcgcccttc gcatacacgg gcgtcgcgct ggcagacctg ctgctcgggc
     2821 tcccgactgt gacgggcggc gcgcgcgttg acaacgcgca gcacctgcgc acggagagct
     2881 accacttctt cgcaaacgac tcgttccgcc tgacgccgcg cctgaccctg agcgcgggcc
     2941 tgcgctacga gtacaactcg ccgcccgttg acgcggaaga ccgcgcgaac ctttacgact
     3001 tcgccacgcg ctcgctcgtg cgcgtaggca cggcggggat gccccgcgcg ggctacgagg
     3061 ccgaccgcaa caacttcgct ccgcgcgtag gcctcgcgtg gactctgggc gaggagggcg
     3121 agacggtgct gcgcgcgggc tacggcgtct attacgacac ctcgccgctc gcgccctccg
     3181 aggcgctcta cttcaacgcg cccttcttcg acttcaacct cttcttcccg ctgcccggtc
     3241 tgcccctgac cgtcacagac ccgttcccgt ccttcttccc cgtgcaactg ccggacgcgg
     3301 cgcaggccat acagcggg
//
LOCUS       DASPKR010000272         3066 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_165521, whole genome shotgun sequence.
ACCESSION   DASPKR010000272 DASPKR010000000
VERSION     DASPKR010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3066)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3066
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165521"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VD968_07615"
     CDS             <1..199
                     /locus_tag="VD968_07615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14290.1"
                     /translation="KAIRVSVLLLSLTGAARAGEIIIPPAPNSATANCVQEVPANSED
                     SVEETVTLTGIALAVLLSLLP"
     gene            523..915
                     /locus_tag="VD968_07620"
     CDS             523..915
                     /locus_tag="VD968_07620"
                     /inference="COORDINATES: protein motif:HMM:NF015898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HYE14291.1"
                     /translation="MPETELPRPTDAELQILKVLWRRGPSTVREVFETLGETRGTGYT
                     TVLKLMQIMADKGLVVRDERERAHRYEAASPEDETQRHLVGDLLRKAFDGSAQKLVMH
                     ALSAERATAEELTEIRRMLDELERGGER"
     gene            921..2963
                     /locus_tag="VD968_07625"
     CDS             921..2963
                     /locus_tag="VD968_07625"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HYE14292.1"
                     /translation="MLDTLRPLSDAAGWALVYSLWQGALVAAAYACFSALAARAGANV
                     RYAGAVVALALMLLLPCLTAGLALRSPQGLFSREAVAPEGAWTDSARDRGVASRAGKE
                     HATRAATPERPSPAASVSSLRGWAEERLEAALPWLVLAWLAGVVSLGSRYAGAWLLVV
                     RLRRSAEPVAERFEEMLARVSAGLRVSRGVRLCRSALVEVPTVVGHLRPVILVPAAAL
                     VGLTPRQLEAVLAHELAHVRRYDYAVNLLQTAVETLLFYHPAAWWLGRRARAEREHAC
                     DDAAVEATGDVLLYARALAALEQLRGAPAAPALALAADGGSLVKRIQRLVSRNRRARA
                     PRPFAAVALGAALILCCAVAAQRSLATAGAVPGWEIRAGAASAQPRRQVAVTFVNYPG
                     YIYDAGRLANKSNKLLRSLAANGIQAVAFVNEAQFYRVDGSEHEPRVQALRDWLDAGH
                     ELGNETAHHMNLYRQPTEDFEADVIRGEQLIKKLSAERGRRVRYFSYPYLNTGSNPEE
                     KARVERFLRGRGYQIHPVTVDNMDWLFSHAYMDALRREDEAAAAAIRADYVPYMERMF
                     EFYEAYSREVVGREIPQVLMLTGGALNADCFDDLVAMMKRRGYSFVTMEQATRDEAYG
                     LPDTYTGERGDSWIARWAVTKGMEFRDTEEDELPDSMKRYMAERSHEWRAKARPKK"
BASE COUNT          477 a         1017 c         1100 g          472 t
ORIGIN      
        1 gaaagcaatt agagtctccg tgctgcttct gtctttaacc ggcgctgccc gcgcgggcga
       61 gattattatt ccccccgcgc caaattcggc gacagcaaac tgcgtgcagg aagtgcctgc
      121 aaatagtgag gattctgtcg aggaaacggt caccctgaca gggatcgcac tcgccgtgct
      181 cctaagcctg ctgccctaac tctcgcgtca ggctaacctt aaaggccgcc cctgcgacgg
      241 ctcggcataa gtgtgtcttg cgggcggcag aacgggaaga ggtcgcccgc aggcgtgaga
      301 gtaacccccc gcgggggaga atgcaacgat ttttacagcc gccacaattt ttgtcggccg
      361 gacatgcgcc gcaaatgttg caggaggcgt taagtccttt atttgagata cctcgtccac
      421 ttcgcacagt acgcatcggt caagtacgaa atttttcgtt gacagtacga atctcttcgt
      481 agtagcctct ccccggcctt ggtcgggagg tgcttaggag cgatgcctga aaccgaattg
      541 ccgcgcccga cggacgcgga actacaaatc ctcaaggtgc tctggcgccg cggccccagc
      601 accgtgcgcg aggtcttcga gacgctcggc gagacgcgcg ggacgggcta cacgaccgtc
      661 ctcaagctca tgcagatcat ggcggacaag ggactggtcg taagagacga gcgcgagcgg
      721 gcgcaccgct acgaggccgc gtcgcccgag gacgagacgc agcggcacct cgtcggcgac
      781 ctgctgcgga aggctttcga cgggtcggcg cagaaactag tcatgcacgc gctctcggcc
      841 gagcgcgcca cggccgaaga gctgacggag atcaggcgga tgctcgacga gctggaaagg
      901 ggaggggaac gttgaacggg gtgctcgaca cgctccgccc gctgtcggac gcggccgggt
      961 gggcgctcgt ctactcgctc tggcagggcg cgctggtagc ggccgcctac gcgtgcttct
     1021 cggctctggc ggcacgcgcc ggtgcgaacg tccgctacgc gggcgcggtc gtcgcgctgg
     1081 cgctcatgct tctgctaccg tgcctgacgg cggggctcgc cttgcgctcg ccgcaggggc
     1141 ttttctcgcg cgaggccgtt gcgccggagg gggcgtggac ggactctgcg cgggatcgcg
     1201 gcgtcgcgtc gcgtgcgggc aaggagcacg cgacgcgcgc cgcaacgccc gagcggcctt
     1261 cgcccgccgc ctcggtctcc tccctgcggg gctgggccga agagcggctt gaggccgcgc
     1321 tgccgtggct cgtcctcgcg tggcttgcgg gcgtggtgtc gctcggctcg cggtacgcgg
     1381 gggcgtggct actcgtggtg cgcctgcgca ggagcgcgga gccggtcgcc gaacgcttcg
     1441 aggagatgct cgcgcgcgtc tccgcggggc tgcgcgtgtc gcgcggggtg cgcctgtgcc
     1501 gttcggcgct cgtcgaggtg ccgacggtcg tcgggcacct gcgcccggtc atactcgtcc
     1561 cggccgcggc tctcgtcggg ctcacgccgc ggcagttgga ggccgtgctc gcgcacgagc
     1621 tggcgcacgt gcgccgctac gactatgccg tcaacctctt gcagacggcg gtcgagacgc
     1681 tgctcttcta tcacccggcg gcgtggtggc tcggccgccg cgcgcgcgcc gagcgcgaac
     1741 acgcctgcga cgacgcggcc gtcgaggcga cgggcgacgt gctgctctac gcgcgcgccc
     1801 tcgccgcgct cgaacaactg cgcggcgccc ccgcggcgcc ggcgctggcc ctcgcggccg
     1861 acggaggatc actcgtgaaa cgcatacaga gactcgtcag caggaaccgc cgcgcgcgcg
     1921 cgccgcgccc cttcgcggcc gtcgccctcg gcgcggcgct catcctctgc tgcgccgttg
     1981 ccgcgcagcg ctcgctcgcc accgcggggg ccgtgccggg gtgggagatt cgcgcgggcg
     2041 cggcctcggc acagccgcgc cggcaggtgg cggtcacctt cgtcaactac cccggctaca
     2101 tctacgacgc ggggcggctg gcgaacaagt cgaacaagct gctgcgctcg ctcgccgcga
     2161 acggcatcca ggcggtcgcc ttcgtcaacg aggcgcagtt ctacagggtg gacggctcgg
     2221 agcacgagcc gcgcgtgcag gcgctgcgcg actggctcga cgccggccac gagctgggca
     2281 acgagacggc gcaccacatg aacctctaca ggcagccgac cgaggacttc gaggcggacg
     2341 tgattcgcgg cgagcaactc atcaagaagc tctcggccga gcgcggccgg cgggtgcgtt
     2401 acttcagtta cccgtacctg aacaccggct cgaacccgga ggagaaggcg cgcgtcgagc
     2461 gcttcctgcg cggccgcggc taccagattc accccgtcac cgtggacaac atggactggc
     2521 tcttcagcca cgcctacatg gacgcactcc gccgcgagga cgaggcggcg gccgccgcca
     2581 tacgcgccga ctacgtcccc tacatggagc gcatgttcga gttctacgag gcgtactcgc
     2641 gcgaggtcgt cgggcgcgag ataccgcagg tgttgatgct gacgggcggg gcgctcaacg
     2701 ccgactgctt cgacgacctc gtcgcgatga tgaagcggcg cggctactcc ttcgtcacga
     2761 tggagcaggc gacgcgcgac gaggcgtacg ggctgccgga cacctacacg ggcgagcgcg
     2821 gcgactcgtg gatagcgcgc tgggccgtga cgaaggggat ggagttcagg gacacggagg
     2881 aggacgagtt gcccgactcg atgaagcgct acatggccga gcgcagtcac gagtggcgcg
     2941 cgaaggccag gccgaagaag tagccggggg tgacgagaat gaggcggaag acaatcgcgc
     3001 gcgcccttct ggtttcggcg atgttcgtgt cggggctcgc ggtgcaggcc gcggggcagg
     3061 cgggcg
//
LOCUS       DASPKR010000273         2054 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_423917, whole genome shotgun sequence.
ACCESSION   DASPKR010000273 DASPKR010000000
VERSION     DASPKR010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2054)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2054
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423917"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1103)
                     /locus_tag="VD968_07630"
     CDS             complement(<1..1103)
                     /locus_tag="VD968_07630"
                     /inference="COORDINATES: protein motif:HMM:NF013661.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan recognition family protein"
                     /protein_id="HYE14293.1"
                     /translation="MDSTLSYSKIVERYAHYFERPEVRLRFLNNTLALQAASRARADA
                     FIERMGPARRLVLKNRRAYEQLLKLWLYHLILQELAKLLPAASNERRTLLCMTGRAPL
                     SSRLLFRCYQHRRLLAFPCAALAAALLFGACAGLYWTAGRANAYLAARYGAGKAVTPV
                     VHLQTAQARHSAPRLPDFKPEKVWLVEQAEGFERYSNGARILRDYETENRPRGFYLFR
                     GGKPLTEEGLKRDPLGIVFHTSENDMLPFTPDNSASIETRSRGLLEYVRRHKSYNYVI
                     DRFGQIYKIVRDEDAANHSGNSVWADDRATFVGLNESFLGVCFETTMSAGAEERLTEA
                     QLVAGRLLTQVLRSRHQIEDAYCVTHGLVSVNPS"
     gene            complement(1140..>2054)
                     /locus_tag="VD968_07635"
     CDS             complement(1140..>2054)
                     /locus_tag="VD968_07635"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HYE14294.1"
                     /translation="VFDALYCTVCPTCGALFGTRPQAQGGESAETLSADDIIVIPEES
                     PGAFAAEQFVASAEDVLEAEAPAAAKSQFTAPPSASAVVVTAPARPSGSFAEAAPAQE
                     AEPAAEAEIWAPLPPAARPVPDGYAVGMRVLRVAPAWLLLSSLGFLAVLLLFNWMSKP
                     VGEAVAATAPESVLQNAATSTTSEPVAPKPAKQGPAPSKPAVEQPAPQKAAQPATEPA
                     APSETGGKFTVQVGAFSNVSEANERVSALRAAGFDARAEAAEIPNRGVWHRVRVGRLA
                     TREDASRLASELRSKGAAAQAMVAEIQK"
BASE COUNT          296 a          637 c          806 g          315 t
ORIGIN      
        1 gaggggttga cgctgacgag gccgtgcgtg acgcagtagg cgtcttcgat ctggtggcgg
       61 ctgcgcagga cctgtgtgag caggcggccg gcgacgagct gcgcctcggt cagacgctcc
      121 tccgccccgg cgctcatcgt cgtctcgaag cagacgccga ggaagctctc gttgaggccg
      181 acgaaggtgg cgcggtcgtc cgcccagacg gagttgccgg agtggttggc ggcgtcctcg
      241 tcgcggacga ttttgtaaat ctggccgaag cggtcgatga cgtagttgta ggacttgtgg
      301 cggcggacgt attcgagcag gccccggctg cgcgtctcga tggaggcgct gttgtcgggc
      361 gtgaacggca gcatgtcgtt ctcggaggtg tggaagacga tgccgagggg gtcgcgcttg
      421 aggccctcct ccgtaagggg cttgccgccg cggaagaggt agaagccgcg cgggcggttc
      481 tcggtctcgt agtcgcgcag gatgcgcgcg ccgttgctgt agcgctcgaa gccttcggcc
      541 tgctcgacga gccagacctt ctccggcttg aagtcgggca ggcgcggcgc gctgtgcctc
      601 gcctgggcgg tctgaagatg gacgacgggc gtcaccgcct tccccgcgcc gtagcgcgcg
      661 gcgaggtaag cgttggcgcg gccggcagtc cagtagagcc cggcgcaggc gccgaagagc
      721 agcgcggcgg cgagcgcggc gcaagggaag gcgagcaggc ggcggtgctg gtagcagcgg
      781 aagagcaggc gcgaagacag gggcgcgcgc ccggtcatgc acagcagcgt gcggcgctcg
      841 ttcgaggcgg cggggaggag cttggcaagc tcctgtaata tgaggtggta gagccagagt
      901 tttaggagct gttcgtaggc gcggcggttc ttcaggacga ggcggcgggc tggccccatg
      961 cgctcgatga aggcgtccgc gcgcgcgcgg ctggccgcct gaagcgccag cgtgttgttg
     1021 aggaagcgca ggcgcacctc gggccgttcg aaatagtgag cgtagcgctc gacgatcttc
     1081 gagtagctca gcgtcgaatc cacgggaacc ctctggcgtg cggggcgggg cctgaccgac
     1141 tacttttgaa tttcggcgac catcgcctgc gcggcggcgc ccttagagcg aagctcggag
     1201 gcgagccgcg aggcgtcctc gcgcgtggcg aggcgcccga cgcgcacgcg gtgccagacg
     1261 ccgcggttag gaatctcggc cgcctcggcg cgcgcgtcga agccggccgc gcgcagagcc
     1321 gagacgcgct cgttcgcctc agagacgtta ctgaatgcgc cgacctgcac ggtgaacttc
     1381 ccgcccgttt cggacggggc tgcgggctcc gtcgcgggct gcgcggcttt ctgaggggcg
     1441 ggctgttcga cggcaggctt gctgggcgcg ggcccttgct tcgcgggctt cggcgcgacg
     1501 ggctcggacg ttgtgctggt cgcggcgttc tgaagcaccg actcgggcgc ggtcgcggcg
     1561 acggcctcgc cgacgggctt cgacatccag ttgaaaagca ggagaacggc gaggaacccg
     1621 aggctgctca gcaggagcca ggccggcgcg acgcgaagca cgcgcatacc cacggcgtag
     1681 ccgtccggca cgggtcgcgc ggccggcggc agcggagccc agatttctgc ctcggcggcg
     1741 ggctcggcct cctgcgcggg cgcagcctct gcgaaggagc ccgagggccg cgcgggggca
     1801 gtcacgacga cggcagaggc cgacggcggc gcggtgaact gactttttgc cgcggccggg
     1861 gcctctgctt cgagcacgtc ttcggccgac gccacgaact gctcggcggc gaaagctccg
     1921 ggcgactctt cggggatgac gatgatgtca tcggccgaga gcgtctcggc gctctcgcca
     1981 ccctgcgcct gcggccttgt gccgaagagc gcgccgcacg tggggcagac cgtgcagtag
     2041 agggcgtcga acac
//
LOCUS       DASPKR010000274         4971 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_423946, whole genome shotgun sequence.
ACCESSION   DASPKR010000274 DASPKR010000000
VERSION     DASPKR010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4971)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4971
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423946"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..381
                     /locus_tag="VD968_07640"
     CDS             <1..381
                     /locus_tag="VD968_07640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14295.1"
                     /translation="FTFRHPTGETPEQYVDSLNGHAGFPLTPAERDELVARLMDGRET
                     RASVLRRVAEDEDFARAEFNRAFVLMQYFGYLRRSPSAPPDTGFGGYNFWLGKLEEFG
                     GDWRRAEMVKAFITSIEYRQRFGQ"
     gene            complement(432..674)
                     /locus_tag="VD968_07645"
     CDS             complement(432..674)
                     /locus_tag="VD968_07645"
                     /inference="COORDINATES: protein motif:HMM:NF017574.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HYE14296.1"
                     /translation="MKPHVTLYTKPGCHLCEEAKREIERAGCAGLYTFEEVNILTDPE
                     LLRRYGYDIPVLLIDGTHAFRHRLTAEEFRRKIAGA"
     gene            988..1857
                     /locus_tag="VD968_07650"
     CDS             988..1857
                     /locus_tag="VD968_07650"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HYE14297.1"
                     /translation="MDQKDNPTPPAEGQGAEAKQDGPTVQELLAASRGEVTPRGAEPP
                     AKGRPATPVTPPAFEASSGTVPEAAPRGDAPGKSVPATTPQAARATPSTGAARAGSTP
                     TAAVAKGVGKGVATKTPAGPIVQSAPEPPINKLRRRIVWASVASFLGVSFLMFLRFFL
                     PRAITEPSSVFRIGFPGDYSFGVDTKWQHQYRVWVVRNSERLFVIHAVCTHLGCTPDW
                     KASENKFKCPCHGSGYDSEGVNFEGPAPRPMDRAHVEMDAEGQIVVNKDRLYKWEKGK
                     ESEFNNEGAFIRV"
     gene            1929..2876
                     /locus_tag="VD968_07655"
     CDS             1929..2876
                     /locus_tag="VD968_07655"
                     /inference="COORDINATES: protein motif:HMM:NF012263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b N-terminal domain-containing
                     protein"
                     /protein_id="HYE14298.1"
                     /translation="MEPERPGGNGGSGGAEELEPSEARRGKAGTLIGKARAQGLALKE
                     RAEAEAKTYKDPQQTQLWKSIFRVSHDRSDPRNRSLAVLSNVFLHLHPAKINRDAVRY
                     PFTWGMGGITFYLFIVLTFTGVLLMFYYHPTKVQAFRDILYLEHDVPFGKLLRNMHRW
                     AAHLMIITTWLHMFRVVLTGSYKRPREFNWCVGVVLLVLTMLLSFTGYLLPDDQLGFW
                     AVTVGTNMARATPVLGSEGPFGPQLGMTPFNDVRFGLLGGSIVDANALLRSYIWHCIG
                     IPLVASVFMAVHFWRIRKDGGISGPAPVMLESEMKAVKK"
     gene            2919..4043
                     /locus_tag="VD968_07660"
     CDS             2919..4043
                     /locus_tag="VD968_07660"
                     /inference="COORDINATES: protein motif:HMM:NF012262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14299.1"
                     /translation="MENVANLQGRSGFRLTRGKLLLIGLALVILVWALTVEDWHQLWV
                     IMSAPDNVPIAALLIVVPFFTWLGFRQARDNDALIEQLEADPQLAKTHYRKTQPWRPG
                     WAREIHVWPYLVRIEFLAAVIVTVILFVWSITLDAPLEEPANPSLTMNPSKAPWYFLG
                     LQEMLVYFDPWIAGVVMPGLLIVGLMVFPYVDSNPLGNGYYTWRQRKFAISMFIWGFF
                     MWIILILIGTFIRGPGWIWFWPGQTWDHNAVVFDRNRDLHEIVAGWGLSFLNLSPFKE
                     IFGAVVVGVIMLAGGVFFHILMTRPAPRLRDFTSWSRFKAWLRTPGEFQRKLLERTSL
                     LQYMTFQFFAISVLWLFPVKLLLRLLFTIKYIWVTPWFNV"
     gene            4075..>4971
                     /locus_tag="VD968_07665"
     CDS             4075..>4971
                     /locus_tag="VD968_07665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14300.1"
                     /translation="MAETPESDKLVKRDAAAEAGPAPDPITGRSTSSILLVCALLLTG
                     SLVWALWDEVYGMRPWKGFQKSYVKRYERYLKRLERRGFKTEEEVKKSDEYLRLESER
                     KQARAAVEGDLKKIDGRVRVIDAQLDAISNEFQNRRGRITVASYEAEVADPEDKDDRR
                     RDIEEMKAQKAVISVPADDGSGKAQRQELDYNQIEAKYNSLKDEKGRLLAERGELLKE
                     SSELERKRDEYLKDNVTEATESQVRLLRAGLENFNFGIKQININGDQIVERCETCHVG
                     VRSPIRITPADMMPAGRGRRPDK"
BASE COUNT          911 a         1599 c         1612 g          849 t
ORIGIN      
        1 ttcaccttcc gccacccgac cggcgagacg cccgagcagt acgttgacag cctcaacggc
       61 cacgccggct tccccctcac tccggccgag cgcgacgagc tggtagcgcg cctcatggac
      121 ggccgcgaga cgcgcgcgag cgtattgcgc cgcgtggccg aggacgagga cttcgcgcgc
      181 gcggagttca accgcgcctt cgtcctgatg cagtacttcg gctacctgcg ccggagcccc
      241 tcggccccgc ccgacactgg cttcgggggc tacaacttct ggctagggaa gctcgaagag
      301 tttggaggcg actggcgccg cgccgagatg gtcaaggcgt tcataacctc aatcgagtac
      361 cggcagcgct tcggccagtg agacggcggc cgttgacgac ggcactgccg tcgtcaacgg
      421 cccgtcgcgc cttacgcgcc cgcgattttc cgcctgaact cctcggccgt aaggcggtgg
      481 cggaaggcgt gggtgccgtc tatgaggagg acggggatgt cgtagccgta gcgcctcaga
      541 agctcggggt ctgtgagtat gttgacctcc tcgaaggtgt agaggccggc gcacccggcg
      601 cgctcgatct cccgcttcgc ctcctcgcag aggtggcagc cgggcttcgt gtagagggtc
      661 acgtggggtt tcatcttcgg gcgaaattta gcacggtctg tggcgcgggc gcgaaagttc
      721 atagtaaaaa ataaatgttg ccacgaaaac gtgaaagggg tataaatgcc ccgaagccaa
      781 gccattttta ttgtgtgatt tcaggcgcgg cgctcttcat gtcacgcaaa agcatttgat
      841 cccacacgca ggaaggtaag agccccagac tcttattttg cggcgactcg catcgccagc
      901 gagtggcctg cacctcgggc tacctttagg ccgtaggcgc gggccgtccg gaaccgaaac
      961 cgaaaacccc cgaagggagt tcgcggcttg gatcaaaagg acaatccgac accgcccgcc
     1021 gaagggcagg gcgccgaggc caagcaagac ggcccgacag tacaggaact tctagccgcc
     1081 tcacgcgggg aagtcacgcc ccgcggcgcg gagccccccg ctaaggggcg tccggctacg
     1141 cccgtcacgc ctccggcgtt tgaggcctcc tccggcacgg ttcccgaggc cgcgccgcgc
     1201 ggcgacgcgc cgggcaagtc cgtgcctgcg accacgcccc aggcggcgcg agcgacgccc
     1261 tcgacggggg cggcgcgcgc cggctcgacg cctacggccg cggtcgccaa gggcgtcggc
     1321 aagggggtgg cgacgaagac gccggccggg ccgattgtgc agagcgcgcc cgagccgccg
     1381 ataaacaagc tcaggcgccg gatcgtttgg gcgagcgtcg cgtcgttcct cggcgtgtcg
     1441 ttcctgatgt tcctgcgctt cttcctgccg cgcgcaatca cggagccttc gagcgtcttc
     1501 cgcataggct tccccggcga ctactccttc ggcgttgaca cgaagtggca gcaccagtac
     1561 cgcgtctggg tagtccgaaa ctcggagcgg ctcttcgtca tccacgccgt ctgcactcac
     1621 ctcgggtgca cgcccgactg gaaggcgagc gagaacaagt tcaagtgccc gtgccacggg
     1681 agcggctacg acagcgaggg cgtcaacttc gaggggccgg cgccgcgccc gatggacagg
     1741 gcgcacgtcg agatggatgc ggaggggcag atagtcgtca acaaggacag gctctacaag
     1801 tgggagaagg ggaaggagag cgagttcaac aacgaaggcg cgttcataag ggtctagctg
     1861 gcgcaacaaa aacatcaagc gggttcgtct ttctctgaaa aacgttttgg gcttgtgggg
     1921 gtgaagcgat ggagcctgaa cggccgggtg ggaacggcgg cagcggcggc gcggaagagc
     1981 ttgagccgag tgaggcccgg aggggcaagg ccggcacgct cataggcaag gcgcgcgcgc
     2041 agggcctcgc gctgaaggag cgagccgagg ccgaggccaa gacttacaaa gacccgcagc
     2101 agacgcaact ctggaagtca atcttccgcg tctcgcacga ccgctccgac ccgcgcaacc
     2161 gctcgctcgc agtcctctcg aacgtcttcc tgcacctcca cccggcgaag ataaaccgcg
     2221 acgccgtgcg ctaccccttc acgtggggca tggggggcat caccttctac ctcttcatcg
     2281 tgctcacctt cacgggcgtg ctcctcatgt tttactacca cccgacgaag gttcaggcgt
     2341 tccgagacat tctctacctc gagcacgacg tccccttcgg caagctcctc aggaacatgc
     2401 accgctgggc ggcgcacctg atgataataa cgacgtggct gcacatgttc cgcgtggtgc
     2461 tgacgggctc ctacaagcgg ccgcgcgagt tcaactggtg cgtgggcgtc gtcctgctcg
     2521 tgctgacgat gttgctctcc ttcacggggt atcttctgcc ggacgaccag ctgggcttct
     2581 gggccgtgac ggtggggacg aacatggcgc gcgccacgcc agtgctgggc agcgaggggc
     2641 cgttcggccc gcagctcggg atgacgcctt ttaacgacgt gcgcttcggg ctgctgggcg
     2701 gctcgattgt tgacgcgaac gcgctgctcc gctcttacat ctggcattgc ataggcatcc
     2761 cgctcgtcgc ctcagtcttc atggccgtcc acttctggcg catacggaag gacggcggca
     2821 tctccggccc cgcgcccgtc atgctcgaat cggagatgaa ggcggtcaag aagtagtcag
     2881 gccgaaagtt gacttaagcc caggtcgagg ttcttcagat ggaaaacgtc gcgaatctac
     2941 agggccgcag cggcttccgt ttgacgcgcg ggaaattgct gctcatcggg ttggcgctcg
     3001 ttatactcgt gtgggcgctc acggtcgagg actggcacca gctctgggtg attatgtcgg
     3061 cgccggacaa cgtccccatc gcggcgctcc tgatcgtcgt cccgttcttc acgtggctgg
     3121 gcttccggca ggcgcgcgac aacgacgcgc tcatcgagca gctggaagca gacccgcagc
     3181 tcgccaagac gcactaccgc aagacccagc cgtggcggcc cggctgggcg cgcgagattc
     3241 acgtctggcc ttacctcgtc cgcatagagt tcctcgccgc cgtcatcgtc accgtcatcc
     3301 tcttcgtctg gtcaatcacg ctcgacgcgc ctctggaaga gcccgccaac ccgagcctta
     3361 cgatgaaccc ttcgaaggcg ccgtggtact tcctcggcct tcaggagatg ctcgtctatt
     3421 tcgacccgtg gatagcgggc gtggtgatgc cggggctgct cattgtcggg ctgatggtct
     3481 tcccctacgt tgactcgaac ccgctgggca acggctacta cacctggcgg cagcggaagt
     3541 tcgcgatctc gatgttcatc tggggcttct tcatgtggat catactgatc ctcatcggca
     3601 ccttcataag ggggccgggc tggatctggt tctggccggg ccagacgtgg gatcacaacg
     3661 ccgtcgtctt cgaccgcaac cgcgacctgc acgagatagt cgccggctgg ggcctctcgt
     3721 tcctgaacct ctcgccgttc aaggaaatct tcggcgcggt ggtcgtgggc gtcatcatgc
     3781 tggcgggcgg cgtcttcttc cacatcctga tgaccaggcc cgcgcctcgg ctccgcgact
     3841 tcacgtcgtg gtcgcgcttc aaggcatggc tgcgcacgcc gggcgagttc cagcgaaagc
     3901 tactcgaacg gacgagcctg ctccagtaca tgaccttcca gttcttcgct atctcggtgc
     3961 tgtggctctt ccccgtgaag ctcctgctgc ggctcctctt caccatcaag tacatctggg
     4021 tcacaccctg gttcaacgtc tgacgcttcc cgaactggcg gaggtagaag tcaagtggct
     4081 gagactcctg aatcggacaa gctggttaag cgcgacgcgg ccgccgaggc cggcccggcc
     4141 cccgacccca tcacgggccg ctcgacgagc agcatcctgc tcgtctgcgc gctgcttctg
     4201 acgggctcgc tcgtctgggc gctgtgggac gaggtttacg ggatgcgccc gtggaagggc
     4261 ttccagaagt cctacgtcaa gcgctacgag cgctacctga agcgcctgga gcggcgcggc
     4321 ttcaagaccg aggaagaggt aaagaagagc gacgagtacc tgcgcctcga gagcgagcgg
     4381 aagcaggcgc gcgccgccgt cgagggcgac ctcaagaaga tagacggccg cgtgcgcgtc
     4441 attgacgcgc agctcgacgc catctcgaac gagttccaga accgccgcgg ccgcataacg
     4501 gtcgcgagct acgaggccga ggtcgcagac ccggaagaca aggacgaccg gcgccgcgac
     4561 atcgaggaga tgaaggcgca gaaggccgtc atctccgtcc cggccgacga cggcagcggc
     4621 aaggcccagc ggcaggagct cgactacaac cagatagagg cgaagtacaa ctccctgaag
     4681 gacgagaagg gccgtctgct cgccgagcgc ggcgagctcc tcaaggagtc gagcgagtta
     4741 gagaggaagc gcgacgagta cctcaaggac aacgtgacgg aggcgaccga gagccaggtg
     4801 cgcctgctgc gcgccgggct cgaaaacttc aacttcggca tcaagcagat aaacataaac
     4861 ggcgaccaga tagttgaacg ctgcgagacc tgccacgtgg gcgtccgctc gccgataagg
     4921 ataacgccgg ccgacatgat gccggccggc cgcggccgcc gccccgacaa g
//
LOCUS       DASPKR010000275         4109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_812198, whole genome shotgun sequence.
ACCESSION   DASPKR010000275 DASPKR010000000
VERSION     DASPKR010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4109)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4109
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_812198"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1644
                     /locus_tag="VD968_07670"
     CDS             <1..1644
                     /locus_tag="VD968_07670"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HYE14301.1"
                     /translation="LLGGAYGAAHPDRAREHLGIAARTFRELGARLDLARAEELLESF
                     EGREPEELSPEPPAPAQLLTLRLAEAVASRELLLRELAAVIQQEARAVRVAVFEAGDE
                     GHARVVTSHGFTGAEGARLAAGLDRAGTDEERERLADEEDARLIALRPSSAPPATLFI
                     SPRALSALPGGAPLEPLLRVVELGMDVCALRTRARSGAGPQSQGALADASLMPGFIHS
                     SPAMTRLVDEVHKIRSSDVTVLVTGESGTGKELVARAIHALSSRRNKVFVPFNCTAVP
                     KELSEGYLFGYRRGAFTGAVQDSPGVIRTAAGGTLFLDEVGDLPLDVQPKLLRFLQEG
                     EIQPLGEQRPTKVDVRIIAATNTDLEKMVSEGRFREDLYYRLNVIRLRVPPLRERRSE
                     IPTIVNYYINHYSTRFGRRDITITPQTLDLLMVCDWPGNVRMLCNEIQRVVARAEDGT
                     VITPDHLSPELRHIAAPHAPATVTQINSGGGLAAAAASDAISQGLTLADATAELERRM
                     IAEALRKHNGNISRAARELGLTRRGLYLKLGRHDLSASA"
     gene            1733..2404
                     /locus_tag="VD968_07675"
     CDS             1733..2404
                     /locus_tag="VD968_07675"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HYE14302.1"
                     /translation="MSAAKQLVDLSHVVEHGLVTYRGLPAPVISDHLSREESRKLYAG
                     GTEFHIGRIEMVANTGTYLDSPFHRYEDGDDLSGLALSSLADLDGVVVKADGARGRAV
                     GRDAFDGLDVRGKAVLVHTGWDAHWKTERYFEGHPFLTEEAAESLAGGGAALVGIDSY
                     NIDDTADGRRPAHSVLLRAGVPIVEHMCGLGRLPREGFKFFAVPVKVRGLGTFPVRAF
                     AVVGR"
     gene            2423..2914
                     /locus_tag="VD968_07680"
     CDS             2423..2914
                     /locus_tag="VD968_07680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14303.1"
                     /translation="MTKTKFLTLLLLIVGLPANAAGQEKPSWIARLETLLREKERAWR
                     IAEKDARGAGKYYHETIILKSGALRADISIDVLDTAEMAKEQFDGEEIAFTNILGKGS
                     VKSELENLGDENFMFTGRRGPRRRGNIFLRRGNVLVKVFAPSARTAERFARHVVGQMP
                     PPD"
     gene            2933..3487
                     /locus_tag="VD968_07685"
     CDS             2933..3487
                     /locus_tag="VD968_07685"
                     /inference="COORDINATES: protein motif:HMM:NF019430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HYE14304.1"
                     /translation="MKKSISVSAVLIVVPLLVWSQTANTPYAGQESRRIKSLSEAEVQ
                     AYLTGRGMGLAKPAELNSYPGPMHALELAEQLHLSEAQRAELQKVFEAMRAEAVRLGK
                     LVVEKEEALNRLFAEGRASADNVQAAVGEIARLQGELRAVHLRAHLDTKRVLSPHQVK
                     KYDELRGYGGKEGGPQHQHSGPGE"
     gene            complement(3502..>4109)
                     /locus_tag="VD968_07690"
     CDS             complement(3502..>4109)
                     /locus_tag="VD968_07690"
                     /inference="COORDINATES: protein motif:HMM:NF014305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14305.1"
                     /translation="DRERDGLLYVPPAYRPDRPAPLALMLHGAGGSAAQGLSLLRVFA
                     DSSGLILLAPESRRGTWDVIAGEYGPDVAFIERALEKTFERYNIDPGRIAFGGFSDGA
                     SYALSLGVTNGDLVTHVVAFSPGFLAPKRRQGSPRLFISHGTRDRVLPIDSCSRRIVR
                     QARSAGYEVLYREFDGPHTIPHDVAREAVGWFLPDRAPAAR"
BASE COUNT          679 a         1403 c         1428 g          599 t
ORIGIN      
        1 ctgctcggcg gcgcctacgg cgcggcgcac cccgaccgcg cgcgcgagca tttaggcatt
       61 gcggcccgca ccttccgcga gctgggcgcg cgcctcgacc tcgcgcgcgc cgaggagctg
      121 ctcgaaagct tcgaggggcg cgagcccgaa gagctgagcc cggagccgcc cgcgcccgcg
      181 caactcctaa cgctgaggct ggccgaggcc gtcgcctcgc gcgagctgct gctccgtgag
      241 ctcgcggccg tcatacagca ggaggcgagg gccgtccgcg tcgccgtgtt cgaggcgggc
      301 gacgaaggcc acgcgcgggt cgtcacctcc cacggcttca cgggcgcaga gggcgcgcgc
      361 ctggccgccg ggctcgaccg cgccgggacg gacgaggagc gcgagcgcct cgccgacgaa
      421 gaggacgcgc gcctaatcgc cctgcgccct tcgagcgccc cgcccgccac gctcttcatc
      481 tcgccgcgtg cgctctcggc gctgccgggc ggcgcgcccc tcgaaccgct cctgcgcgta
      541 gtcgagctgg ggatggacgt gtgcgcgctg cgcacgcggg cgcgctccgg cgcgggcccg
      601 cagtcgcagg gggctctggc cgacgcgtcg ctcatgcccg gcttcatcca ttcgagcccg
      661 gccatgacgc ggctcgtgga cgaggttcac aagatacgct cttcggacgt gacggtgctc
      721 gtcacgggcg agtccggcac gggcaaggag cttgtcgccc gcgccatcca cgccctctcg
      781 tcgcgccgca acaaggtctt cgtccccttc aactgtactg ccgtccccaa agagctctcc
      841 gagggctacc tgttcggcta ccgccgcggc gctttcaccg gcgccgtgca ggactcgccc
      901 ggcgtcatac gcacggccgc gggcggcact ctcttcctcg acgaggtggg cgacctcccg
      961 ctcgacgttc agccgaagct cttgaggttc ttgcaggagg gcgagattca gccgctcggc
     1021 gagcagcggc ccactaaagt tgacgtgcgc atcatcgcgg cgacgaacac cgacctcgag
     1081 aagatggtct cggaggggcg cttccgcgaa gacctctact accgcctgaa cgtcatacgc
     1141 ctgcgcgtgc cgccccttcg cgagcgccgc agcgagatcc cgaccatcgt caactactac
     1201 atcaaccact actcgacgcg cttcggccgc cgcgacataa ccatcacgcc gcagacgctt
     1261 gacctcctta tggtctgcga ctggcccggc aacgtccgca tgctctgcaa cgagatacaa
     1321 cgcgtcgtgg cgcgcgccga ggacggcacc gttattaccc ccgaccacct ctcgcccgag
     1381 cttcgccaca tcgccgcgcc gcacgcgccc gccaccgtga cgcagataaa ctcaggcggc
     1441 ggcctcgccg ctgccgcggc atccgacgcc atctcgcagg ggctcacgct cgccgacgcc
     1501 acggccgagc tcgagcgccg catgatcgcc gaggcgctgc gtaagcacaa cggcaacatc
     1561 tcgcgcgccg cgcgcgagct tggcctcacg cgccgcggcc tctacctcaa gctcggccgc
     1621 cacgacctct ccgccagcgc ctgagcctcc ccctccctgc cccctgccgc ctgcgccgat
     1681 tcggcggcgg ccggctcttg acataactcc gcttcaaatt attcttggaa ccatgagcgc
     1741 tgctaaacag ctcgtggact tgagccacgt cgtcgagcac ggccttgtca cgtacagggg
     1801 gctgccggcg ccggtcatat ccgaccacct gagccgcgag gagtccagga agctctacgc
     1861 cggagggacg gagtttcaca tcggccggat agagatggtc gcgaacacgg ggacttacct
     1921 cgacagcccg ttccaccgct acgaggacgg cgacgacctg tcggggcttg cgctctcctc
     1981 gctcgccgat ctggacggcg tcgtcgtcaa ggccgacggc gcacggggcc gcgccgtcgg
     2041 gcgcgacgcc ttcgacggcc tcgacgtgcg cggcaaggcc gtgctagtgc acacgggctg
     2101 ggacgcgcac tggaagacgg agcgttactt cgagggtcat cctttcctga cggaagaagc
     2161 cgcggagtcc cttgccggcg ggggcgcagc gctcgtcggc attgattcgt acaacattga
     2221 cgacacggcg gacggccgca ggcccgcgca cagcgttttg ctccgcgcgg gcgtccccat
     2281 cgtcgagcac atgtgcggcc tcgggcggct gccgcgcgaa ggcttcaagt tcttcgcggt
     2341 gcctgtgaag gtcagggggc tcggcacgtt ccccgtgcgc gcgttcgccg tcgtcgggcg
     2401 ttagccgggg cgagtagatg agatgacgaa gacgaaattc ctgacgttac tgctcctcat
     2461 cgtcgggctc cccgcaaacg cggccgggca ggagaagccc tcgtggatag cccggcttga
     2521 aaccttgctg cgcgagaagg agcgggcgtg gaggatcgcg gagaaagacg cgaggggggc
     2581 cgggaagtat taccacgaga cgatcattct gaagtccggc gccctgcgcg ccgacatcag
     2641 catagacgtg ctggatacgg cggagatggc caaagagcag ttcgacggcg aggagatagc
     2701 gttcacgaac attctgggga agggctcggt caagtccgag ctggaaaacc tgggcgacga
     2761 gaacttcatg ttcacgggca ggagggggcc gaggcggcgc gggaacatct ttctcaggcg
     2821 gggcaacgtg cttgtcaaag tcttcgcccc gtcggcccgg acggccgaaa ggttcgcgag
     2881 gcacgtcgtg gggcagatgc cgccgcccga ctagctgaac ggagatgaga agatgaagaa
     2941 gtcaatctcg gtgtcggcgg tcttaatcgt cgtcccgctt ctggtctggt cgcagacggc
     3001 caacacgcca tacgccgggc aggagtcgcg gcggatcaag tcgctttcgg aggcggaagt
     3061 ccaggcgtac ctgacggggc gcgggatggg gctcgcgaag ccggcggagc tgaacagcta
     3121 ccccggcccg atgcacgcgc tggagttggc cgaacagcta cacctctcgg aggcgcagcg
     3181 ggccgagttg cagaaagttt tcgaggcgat gcgcgccgag gccgtgcgcc tcggtaagct
     3241 ggtcgtggag aaagaggaag cgctgaaccg cctgttcgcc gagggcaggg cgagcgcgga
     3301 caacgtgcaa gcggcggtgg gtgagatcgc gcggctgcaa ggggagctgc gggccgtcca
     3361 cctgcgcgcg cacctcgata cgaagcgcgt gctgtcgccc caccaggtta aaaagtatga
     3421 cgagttgcgc ggctacggcg ggaaggaagg cgggccgcag caccagcaca gcggccccgg
     3481 cgaatgacca aacgcccggc gtcaccgcgc ggcgggcgcg cggtcgggga ggaaccagcc
     3541 cacggcctcg cgcgcgacgt cgtgcgggat ggtgtgcggg ccgtcgaact ccctgtagag
     3601 cacttcgtag ccggcgctcc gggcctgccg gacgatccgc ctgctgcaac tgtctatcgg
     3661 cagcacgcgg tcgcgcgtgc cgtgggagat gaacagtcgt ggcgagccct gccgcctctt
     3721 cggcgcgagg aagcccggcg agaaggctac gacgtgcgtg acaaggtcgc cgttcgtgac
     3781 gccgagtgag agcgcgtagg aggcgccgtc ggagaagccg ccgaaggcga tgcggccggg
     3841 gtcaatgttg tagcgctcga aggtcttctc gagcgcgcgc tcgatgaagg ccacgtcggg
     3901 gccgtactcg ccggcgataa cgtcccaggt gccgcggcgc gactcaggcg cgagcaggat
     3961 gaggccggat gagtctgcga agacgcgcag gagcgagagc ccctgagcgg cgctcccgcc
     4021 cgcgccgtgc agcataaggg ccagcggcgc gggcctgtcc ggcctgtacg cgggcggcac
     4081 gtaaagaagg ccgtcacgtt ccctgtcaa
//
LOCUS       DASPKR010000276        10243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1460059, whole genome shotgun sequence.
ACCESSION   DASPKR010000276 DASPKR010000000
VERSION     DASPKR010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10243)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10243
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1460059"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..495
                     /locus_tag="VD968_07695"
     CDS             <1..495
                     /locus_tag="VD968_07695"
                     /inference="COORDINATES: protein motif:HMM:NF027875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen-binding domain-containing protein"
                     /protein_id="HYE14306.1"
                     /translation="NFIIDVTVEGGKLFIKPSHQDRHQLAPVSANEFFDFDEPGEARF
                     VFARDERGEWALTVRGMGPRPISARRLVLPPPSLKGNTTFTLRGHERASVVALAGTFN
                     NWNQSQTLCGREGDAWVCRVDLPAGRHAYKFVVDGVWITDPSNPEVERTAEGHVNSVL
                     LKTR"
     gene            555..1973
                     /gene="sucB"
                     /locus_tag="VD968_07700"
                     /pseudo
     CDS             555..1973
                     /gene="sucB"
                     /locus_tag="VD968_07700"
                     /inference="COORDINATES: protein motif:HMM:TIGR02927.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase, E2 component,
                     dihydrolipoamide succinyltransferase"
     gene            2366..3388
                     /locus_tag="VD968_07705"
     CDS             2366..3388
                     /locus_tag="VD968_07705"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HYE14307.1"
                     /translation="MSKIRVMGLAFALALAVAPAATQAQDGTTGGTNTRAVASGQKMK
                     IKGVVTRRDADSFVVQDANGVSTTVSLTDRTSVKTKGGFLRGGTNYGVTAILRGLNLE
                     VEGRGDGTNLVAEKIRFNESDLRTARTVEANVVPVENRVGAAENRIGQVEQNAQRLSG
                     QLDELAAISNAARGGAKAAQETADAAISGVNATNERISALDDYQVQNTTSVLFRVGSA
                     VLSRDAKSQLDQVAQQALQAKGYVLEVSGFASADGSTEANRRLSQRRADAVIRYLVEN
                     HSIPLRRIITPYGYGELQPVAENNTREGREQNRRVEVKVLVNRGIIQGAPQMSTPSST
                     QNPEVQ"
     gene            3492..4622
                     /locus_tag="VD968_07710"
     CDS             3492..4622
                     /locus_tag="VD968_07710"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE14308.1"
                     /translation="MRCLPDKTRRVLTFMLLAGALLSAPPAPGAPPAVAAPARRQDAP
                     PPPPKPRQTPTPTPTPAEQVIDEDEVVRVTSNLVVVPVSVTDAGGQAVQGLKAEDFRL
                     EEEGRAQKLEAVGDAEQVPLDIALVFDLSSSVTKNFEFEKQSAAGFLREVMKPIDRAA
                     VFTLAEKATLAQPLAPAAEAMRTISTLQAARRSTGTAFYDTVRAAARYLSENAPERSR
                     RVILAISDGEDNFSDDVRDAMLAEGKGGSTQAEAMEHQRGLHAKAVEKVLREVQRADA
                     VFYSINPSGPGLRLNVISQRAQNQMRQMAETTGGNAFVPDRVESLAQVFGQIAAELRA
                     QYLLQYLSNNEAQPGKFLRIKVNTPARPELRVRARQGYYKKG"
     gene            complement(4695..5207)
                     /locus_tag="VD968_07715"
     CDS             complement(4695..5207)
                     /locus_tag="VD968_07715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14309.1"
                     /translation="MRDFIAAVAVCALLSTPAAAAQTRSRRTTTTQRRGTPSRTATQS
                     RLDQTKVNAVRLQLSELNKDLTRFLYLYGRISKDLELTSAQAESAEVAGRTRAGLLEN
                     VRAMRDRLDQLEGQFRFTPGLERQYRSLQGVSRRADEAAQLVAGGRFDQAGKVLVEVA
                     AQLTDVLVEM"
     gene            5346..6002
                     /gene="lipB"
                     /locus_tag="VD968_07720"
     CDS             5346..6002
                     /gene="lipB"
                     /locus_tag="VD968_07720"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: protein motif:HMM:NF010925.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HYE14310.1"
                     /translation="MRERPLIVRRLGRVEYGEAYRVQKETEAAVRAGSVPSTLLLVEH
                     PHVLTVGRRATRAAILAPEETLAERGVSVFETNRGGKMTYHGIGQLVGYPVINLSPDR
                     EDVHRYVRDLEEVLMRAVGDFGVESFRVPGLTGVHTPRGKVAAIGVHIARWVTTHGFA
                     LNVNTDLSYFRLIVACEGEPVTSMKELLGREIALREVEDRVVARFAEVFSMTPEGTDA
                     "
     gene            5995..6951
                     /locus_tag="VD968_07725"
     CDS             5995..6951
                     /locus_tag="VD968_07725"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HYE14311.1"
                     /translation="MLNLESVREARARIDGRVHRTPVLRSRTFDERAGREVVFKCENF
                     QRGGAFKMRGATNKILSLSDEERRRGVVAFSSGNHAQATALASRDAGVSAKIVMPSDA
                     PRSKLEATRGYGAEVALYDRQRDDREALARRIAEREGRVVVPPFDDYFIIAGQGTCAL
                     ELFEEEPDLDALLVPCGGGGLFAGASTAAKALRPGVLCFPVESELSDDTRQSFLRGER
                     VTIPPPPTIADGMRTQTPGALTFPVVQRYAEDVLTASEDEIIETMRFLLFRMKILVEP
                     TGAVAAAAALFNKLPANVRRAGVVLSGGNVDPDALAGLLRGC"
     gene            6986..7924
                     /gene="lipA"
                     /locus_tag="VD968_07730"
     CDS             6986..7924
                     /gene="lipA"
                     /locus_tag="VD968_07730"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010331747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HYE14312.1"
                     /translation="MSRELRVLNNPPSARPPRGPKPEWLKVRIGDPSNQNYVLKLIEN
                     LNLHTVCQEARCPNIFECWADRTATFMIGGDICTRHCGFCAVGKGKPGTLDADEPRHV
                     AEAVRTLNLAHAVITSVNRDDLADGGAAHWAETVRQVRELNPGCRVEVLIPDFNGDEA
                     ALNAVLDAEPDVLNHNTETIARLYKRVRPDADYEQTMTLLRRAAERRDREGRGMLTKS
                     GIMVGLGETFDEVVGLMRDLRAVSCDIMTIGQYLQPHARRLPVERYVTPEEFARWREV
                     GMEMGFRHVESSPLTRSSYHARQQTDGAADDAAPAS"
     gene            8169..8552
                     /locus_tag="VD968_07735"
     CDS             8169..8552
                     /locus_tag="VD968_07735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14313.1"
                     /translation="MRTLNRIATALAVCALLSTAALAGVKTGNVNFREDVIVGDTLIE
                     KGSYKVSYDDETKELKIIDDGKVVATATATLSDAKTVGRYKPLYTSLTAKDGSRLLTS
                     VGMGGKYAQLSSERIAAVRSASNIQ"
     gene            8941..9945
                     /locus_tag="VD968_07740"
     CDS             8941..9945
                     /locus_tag="VD968_07740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14314.1"
                     /translation="MSEQLRRIAARYASALRTSERLAARAAGCWPAASDIWLWRLEDV
                     ASTLVEHWKGKAKPDYGRYDHHSIYAHRYCLNSKEDVQNAPDSVLFQMMGLNPSQEWG
                     WLQFMVRELGWHSMIAANWGLPVLQIPDGVTYSTTTEEQRRAQSVAYYLELMRERGRD
                     LMPQIREFAEKVKAKVKERKGRKWGEDKFTRWLRQYIHWIYCLYAFADKPNPPGLLTP
                     PGEPKYVGDHRAEFAAEIFAAAERRRRNWDAPHPADCLEREAERREAEGLAAERKEIE
                     EHLSRESYRRWVAAAAMGAVSDGELREGFMEHYGDGKGATGKDDTFGHIQSMEAYLNR
                     "
BASE COUNT         1872 a         3550 c         3316 g         1505 t
ORIGIN      
        1 aacttcatca ttgacgttac ggtcgagggc ggcaaactgt tcatcaagcc ttcgcatcag
       61 gacaggcacc aactcgcgcc cgtctccgcc aacgagttct tcgacttcga cgagccgggc
      121 gaggcgcgct tcgtcttcgc cagggacgag cgcggcgagt gggcgctgac ggtgcgcggg
      181 atggggccgc ggcccatctc ggcccgccgg ctcgtgctcc cgccgccgag cctgaagggc
      241 aacacaacct tcacgctcag gggccacgag cgcgcaagcg tcgtcgccct cgccgggact
      301 ttcaacaact ggaaccagtc gcagacgctc tgcggcaggg agggcgacgc gtgggtctgc
      361 cgcgtggatc tccctgcggg caggcacgcg tacaagttcg tggtggacgg cgtctggatt
      421 accgacccct cgaacccgga ggtcgagcgc accgcggaag gccacgtcaa ctccgtgctc
      481 ttgaaaacgc ggtgaccgcg gcgggcgcgc ggcgggcggc tctggtaaga tagcccgcaa
      541 agaataactc agcaggtgga gacggtatgg cgacagaagt tgtgatgccg cagatgggcg
      601 agtccatcgc ggaggggacg atcacgcgct ggctcaagaa ggtgggcgag cgcgtcgagc
      661 gcgacgagcc gctgttcgag atttcgaccg acaaggttga cgccgaaatc cccgcgcccg
      721 ccgcaggcac cttgcaggag ataaagttca aggagggcga cacggtagag gtaaacaccg
      781 tcgtcgcact catcggcgat ggcgacggcg ccgctgctcc cgccgcggaa gctcaggcgg
      841 cgccccccgc gccggagccg cccgccccgc cgcaacagcc cgccgcgccc gcgagccagg
      901 ccgcggtctc ggcccccgcg ccgcccccgc cgccgtccgc tccgcccgcg ccgcagcagc
      961 aacagcccgc ggccgagtca gcgcccccgc cgcaggcgcc cgccccgtcc gaagaaaaat
     1021 ctcgcgccga gcagacggcc gaggagcttc gtcgcacgcg ctcctccccg ctcgtgcgaa
     1081 agatcgccgc cgagcacggc atagacataa ctcggctcga aggcacgggc gcgtccggcc
     1141 gcgtgacgaa gaacgacata atgagcttca tcgagtcggg cggcgcggcg gcccccgcga
     1201 cggcgcagcc gcaggcgcgc ccggcggaag cgcccgcgca ggcgccgccc ccggcccgtc
     1261 cgggcgaggg cgaccgcgtc gagccgatga gcgtcatacg caagaagatc gccgagcaca
     1321 tgctcctgtc gcggcgcacg agcgcgcacg tcacgaccgt ctatgagata gacatgacgc
     1381 gcgttgcccg cttccgcgac cgccacaagc gcgagttcca ggagcgctac ggcacgaagc
     1441 tcaccttcat gcccttcatc ttccaggccg tcacgcaggc cataaggcgc ttccccgtct
     1501 tcaactcgca ggtctccggc gaccagataa tctacaagcg cgacataaac ctcggcatgg
     1561 ccgtcgcgct cgactgggga ttgatcgtcc ccgtcatcaa gcgcgccgac gagctgtcaa
     1621 tcgcggggct agcgaaggcg gccaatgacc tcgccgaccg cgcgcgctcc aaacagctca
     1681 agcccgacga ggtcgcaggc ggcaccttca ccatcacgaa ccccggcgtc ttcggcggcc
     1741 tcttcgacac gccgataatc aaccagccgc aggtggcgat actcggcgtc ggcgtcatag
     1801 agaagcgccc gaaggtcatc acgaccgagg acggcgacga cctcatcgcc atacgccaca
     1861 tggcctactt cgcgctcagc ttcgaccacc gcatcattga cggggccgac gccgagcgct
     1921 tcctctccca cgtcaaggag cttctggaaa ccgaagggca gttcgccgtc tgaaagattt
     1981 cggatggcgg gttagaaaag ccgagagggt tgacgatagc aacgccgccg tcaaccctct
     2041 tccttcattc cgcagtccct cgaattgttg cgggaaggtg gcgattggat aataaatcgc
     2101 ccgcgcgcaa cgaaatcacg cctccgcgca ttccaacccc ttgacttgcg atttagggtt
     2161 cgctaagaat ccacgcagat tcgggaaaac gaaacatcta cctcgcaaga caccaatttc
     2221 gggcgggacg tttaggcgcc ccggcgctcc cgactcgggc ggcccgacgg ctcgaacgtg
     2281 ggagactgcc cgcgtcaaag cgggaggggc gggtggggcg cgcggagttt cccgactaac
     2341 tttcgcacaa acggagatta tgacgatgag caaaattaga gtgatgggct tggcattcgc
     2401 gctcgcgctg gcggtcgcgc cggccgctac gcaggcgcag gacggcacga cgggcggcac
     2461 gaacacgcgc gcggtcgcct cgggccagaa gatgaagatc aagggcgtcg tgacgcggcg
     2521 cgacgccgac tccttcgtcg tgcaggacgc caacggcgtc tcgacgaccg tctccttgac
     2581 cgaccgcact agcgtcaaga ccaagggcgg gttcctgcgc ggcggcacca actacggcgt
     2641 gaccgcaata cttcgcggcc tcaacctcga ggtagagggc cgaggcgacg gcaccaacct
     2701 cgtcgcggag aagattcgct tcaacgagag tgacctgcgt acggcgcgca cggtcgaggc
     2761 caacgtcgtg ccggtggaga accgcgtcgg cgcggccgag aaccgcatcg ggcaggtcga
     2821 gcagaacgcg cagcgcctct cgggccagct cgacgagctg gcggctatct ccaacgccgc
     2881 gcgcggcggc gcgaaggccg cgcaggagac cgccgacgcc gccatcagcg gcgtcaacgc
     2941 cacgaacgag cgcatctcgg cgctggacga ctatcaggtt cagaacacta cgtccgtcct
     3001 cttccgcgta ggcagcgccg tgctctctcg cgacgccaag tcgcagctcg accaggtcgc
     3061 gcagcaggcc ctacaggcta agggctacgt gctcgaagtc tccggcttcg cctccgcgga
     3121 cggctcgacc gaggccaacc gccgcctctc gcagcgccgc gccgacgccg tcatccgcta
     3181 cctcgtcgag aaccacagca taccgctgcg gcgcatcatc acgccctacg gctacggcga
     3241 gctgcagccc gtcgcggaga acaacacgcg cgaggggcgc gagcagaacc gccgcgtcga
     3301 ggtgaaggtg ctcgtcaacc gcggcatcat ccagggcgcg ccgcagatga gcacgccctc
     3361 ctcgacccag aacccggaag ttcagtagcg gcggcctcgc cggtcgcctt gcgacgctga
     3421 agggtgacag gtgacgccgc cgccgacgcg cgcggcgtca cctttcattt tctatgaggg
     3481 agcgaacacc cgtgcgctgc ttacccgaca agaccagaag agttttgacc ttcatgcttc
     3541 tggcgggggc gttgctctcc gcgccccccg ctccgggcgc cccgcccgcc gtcgccgctc
     3601 ctgcgcgccg gcaggacgcg cctcctccgc cgccaaagcc gcggcagacg cctacgccca
     3661 cgccgacgcc cgccgagcag gtgattgacg aggacgaggt cgtccgcgtc acctccaacc
     3721 tcgtcgtcgt cccagtctcg gtgacggacg cgggcggcca ggccgttcag ggcctgaagg
     3781 ctgaggactt caggctcgaa gaggaggggc gcgcgcagaa gctcgaagcc gtgggcgacg
     3841 ccgagcaggt gccgctcgac atcgcgctcg tcttcgacct ctcctcgagc gtgacgaaga
     3901 acttcgagtt cgagaagcag tcggccgccg gcttcctgcg agaggtgatg aagccgattg
     3961 accgcgccgc cgtcttcacg ctcgccgaga aggccacgct ggcgcagccg ctcgcgcccg
     4021 ccgccgaagc catgcggact atctccactt tgcaggccgc gcggcgcagc accggcaccg
     4081 ccttctacga cacggtgcgc gccgcagccc gttacctctc cgagaacgcg cccgagcgca
     4141 gccgccgcgt catcctcgcc atctcggacg gcgaggacaa cttcagcgac gacgtgcgcg
     4201 acgcgatgct ggccgaaggc aagggcggga gcactcaggc cgaggcgatg gagcaccagc
     4261 gcgggctgca cgcgaaggcc gtcgagaagg ttctgcgcga ggtgcagcgc gcggacgccg
     4321 tcttctactc gataaacccg agcgggccgg ggctgcgctt aaacgtcata agccagcgcg
     4381 cgcagaacca gatgcggcag atggccgaga cgaccggcgg taacgccttc gtccccgacc
     4441 gcgttgagag ccttgcccag gtcttcggcc agatagccgc cgagcttcgc gctcagtacc
     4501 tcctgcaata cctctcgaac aacgaggcgc agcccggcaa gttcctccgc atcaaagtca
     4561 acacgcccgc ccgcccggag cttcgcgtcc gcgcgcggca gggctattac aagaagggct
     4621 gagaggcaga agggccgggg aagcgaagag ccgcggcggc ggctcttctg ctttcgcccg
     4681 ttgtcgcgcc cgcctcacat ctcgacgaga acgtcggtta actgcgcggc gacttcgacg
     4741 aggactttgc cggcctggtc gaagcggccg cccgcgacta gctgcgcggc ctcgtcagcc
     4801 cggcgcgaga cgccctggag cgagcggtac tggcgttcca gccccggcgt gaagcggaac
     4861 tggccttcga gctggtcgag ccggtcgcgc atcgctcgca cgttctccag aagccccgcc
     4921 ctcgtcctgc ccgccacctc cgccgactcg gcctgcgcgc tcgtcagctc gaggtctttc
     4981 gagatgcgcc cgtacaggta caggaagcgc gtaaggtctt tgttcagctc cgagagttgg
     5041 agccgcacgg cgttgacctt cgtctggtcg agccgcgact gcgtggcggt gcgcgacggc
     5101 gtgccgcgcc tctgcgtggt ggtcgtgcgg cgcgagcgcg tctgcgcggc ggccgccgga
     5161 gtcgagagta gcgcgcacac ggcgacggcg gcgataaaat ccctcacgag ttccctcctc
     5221 aaagtcattc cccgggtttg attgcttggc gaacaagcta tgcccttcgc ggggagaggt
     5281 caagcggccg caggccctcc ggccgacggc gccgcgccgg gcggtctgct agaatcgctc
     5341 ttgcgatgcg cgagagacct ttaatagttc gccggctcgg ccgcgttgag tacggcgagg
     5401 cttaccgcgt gcagaaggag accgaggcgg cggtgcgcgc gggctcggtg ccgagcacgc
     5461 tgctgctcgt cgagcacccg cacgtcctga cggtcggccg ccgcgccacg cgcgcggcca
     5521 tactcgcccc cgaagagacg ctcgccgagc gcggcgtctc cgtcttcgag accaaccgcg
     5581 gcggcaagat gacctaccac ggcataggcc agttggtcgg ctaccccgtc ataaatttga
     5641 gccccgaccg cgaggacgtg caccgctacg tccgcgacct cgaagaggta ttgatgcgcg
     5701 ccgtcgggga cttcggcgtc gagtcgttcc gcgtacccgg cctcaccggc gtccacaccc
     5761 cgcgcggcaa ggtcgcggcc atcggcgtcc acatcgcgcg gtgggtgacg acgcatggct
     5821 tcgccttaaa cgtcaacaca gacctcagct acttccgcct catcgtggcc tgcgagggcg
     5881 agcccgtaac ctccatgaaa gagctgctgg gccgcgagat cgcgctccgc gaggtcgaag
     5941 accgcgtcgt cgcgcgcttc gccgaggtct tcagtatgac gcccgaggga acggatgctt
     6001 aacctcgaat ccgtcaggga ggcgcgcgcg cgcatagacg ggcgcgtgca ccgcacgccg
     6061 gtcctgcgct cgcgcacgtt cgacgagcgc gcgggccgcg aagtcgtctt caagtgcgag
     6121 aacttccagc gcggcggcgc cttcaagatg cgcggcgcca cgaacaagat tctctcgctg
     6181 agcgacgagg agaggcggcg cggcgtcgtc gccttctcct cgggcaacca cgcgcaggcc
     6241 accgcgctcg cctcgcgcga cgcgggcgtc tccgccaaga tagtgatgcc ttcggacgcg
     6301 ccgcgctcga agctcgaagc cacgcgcggc tacggcgcag aggtagccct ctacgaccgc
     6361 cagcgcgacg accgcgaggc gctcgcccgc cggatagccg agcgcgaggg gcgcgtggtc
     6421 gtcccgccct tcgacgacta tttcatcatc gccgggcagg gcacgtgcgc gctcgaactc
     6481 ttcgaggaag agcccgacct ggacgccctc ctggtcccct gcggcggcgg cggcctcttc
     6541 gctggcgcga gcacggcggc gaaggcgctg cggcccggcg tgctctgctt cccagtcgag
     6601 tcggagctgt ccgacgacac gcgccagtcc ttcctacgcg gcgagcgcgt gaccatcccg
     6661 cccccgccca caatcgccga cggcatgagg acgcagacgc cgggcgcgct caccttcccc
     6721 gtggttcagc gctacgccga ggacgtgctc acggcctccg aggatgaaat catcgagacg
     6781 atgcgcttcc tactcttccg catgaagata ctcgtagagc cgaccggcgc ggtcgccgcc
     6841 gcggccgccc tcttcaacaa gctccccgca aacgtcaggc gcgcgggcgt cgtcctctcc
     6901 ggcggcaacg ttgaccccga cgcgctcgcc ggcctcctcc gcgggtgtta gaatgtcttc
     6961 attaacctac ggagcgaaaa aagagttgag ccgagagctt agagtcctta acaacccgcc
     7021 ttcggcgcgg cccccgcgcg gccccaagcc cgagtggctg aaggttcgca tcggcgaccc
     7081 ctcgaaccag aactacgtcc tgaagctgat agagaacctg aacctgcaca ccgtctgcca
     7141 ggaggcgcgc tgcccgaaca tattcgagtg ctgggccgac cgcaccgcga ccttcatgat
     7201 aggcggcgac atctgcacgc gccactgcgg cttctgcgcc gtcggcaagg gcaagcccgg
     7261 gacgctcgac gccgacgagc cgcgacacgt cgccgaggcc gtccgcacac ttaacctcgc
     7321 gcacgccgtc atcacctccg tcaaccgcga cgacctcgcg gacggcggag ccgcccactg
     7381 ggccgagacc gtccggcagg ttcgcgagct caaccccggc tgccgcgtcg aggtcttgat
     7441 acccgacttc aacggggacg aggccgcttt gaacgccgtg ctcgacgcag agcccgacgt
     7501 gctcaaccac aacacagaga cgatagcccg gctctacaag cgcgtacgcc cggacgccga
     7561 ctacgagcag accatgacgc tgctccgccg cgcggcggag aggcgcgacc gcgaaggccg
     7621 ggggatgctc acgaagagcg gcatcatggt cggcctgggc gagaccttcg acgaggtcgt
     7681 ggggctgatg agggacttgc gcgcggtctc gtgcgacata atgaccatcg ggcagtacct
     7741 acagccgcac gcgcgccggc tcccggtcga gcgctacgtc acgcccgagg agttcgcgcg
     7801 ctggcgcgag gtcggcatgg agatgggctt ccgccacgtc gagtcgagcc ccctgacgcg
     7861 ctcctcctac cacgcccgcc agcagaccga cggcgcggcc gacgacgccg ccccggcctc
     7921 ctgacgttcc cgtaaatcgg attaagtacg aaggcgcgct ccctcgggga gcgcgcctta
     7981 atttttttcg tggacgattt caacggctcg tcacacgcgc gggccggctc gcgtcaggat
     8041 caaccggctg gtcacaaacc gaaaacggcg ggccggattt taacgtttcc ggtttggaac
     8101 tttcggcgag cccggaagca atagtaggtc gagacaagcc ccccccacgg ggcaggaaag
     8161 gaacctagat gagaacactg aaccggatag ctacggccct ggcagtctgc gcgctactca
     8221 gcacggccgc cctcgcgggc gtcaagaccg gcaacgtcaa cttccgagag gacgtgatcg
     8281 tcggcgacac cctcatcgag aagggcagct acaaggtctc ctacgacgac gagaccaagg
     8341 agcttaagat cattgacgac ggcaaggtcg tcgccaccgc caccgccacg ctctccgatg
     8401 ccaagaccgt cgggcgctac aagcccctct acaccagcct gacggcgaag gacggctcca
     8461 gactcctcac ctccgtcggg atgggcggca agtacgcgca gctcagcagc gagcgcatcg
     8521 ccgccgtccg ctccgcgtcg aacattcagt aaaagtttac gacagcagca gcgggccgga
     8581 gccccgcgcg ccccctcgtc agacagtatt gcctgacgag ggggcgcgcg gggcttttca
     8641 cagcgccgcc ctcaacttca gcgccccgcg aacatcgcgc ggcggtgcct gtacggcccc
     8701 cgcgcctacc acttcatctc accccatacc aaaccataac aattcacgcg cggcgcagcc
     8761 acacttaacg cgcgttgggg agatcgccga ccgcgtcgaa ggaaagccct gccaaccaat
     8821 cgccctctac gtcgagcggc gcgagcagtc gggagtgtgg gcggggaagc gtttgcaaca
     8881 gtcggcgctt tcggaagtgg tgaacatctt cccccacctg cccggcgctg ccccattcct
     8941 atgagcgagc aacttaggcg gatagccgcg cgctacgcgt cggctctgag aacgtccgag
     9001 aggctggcgg ctcgggctgc gggctgctgg cccgcggcct ctgacatctg gctgtggagg
     9061 ctggaggacg tggcctctac gctcgtcgag cattggaagg gcaaggcgaa gccggattat
     9121 ggccgctacg atcatcattc catttacgcg caccgctact gcctgaactc taaggaggac
     9181 gtgcagaacg ctcccgactc cgtgctgttt cagatgatgg gactcaaccc gtcgcaggag
     9241 tggggctggc ttcagttcat ggtcagggag ttgggctggc actccatgat cgccgcgaac
     9301 tggggcctgc ccgtgctgca aatacccgac ggcgtgacgt atagcaccac gaccgaggag
     9361 cagcgccggg cgcagtccgt cgcctactac ctcgaactga tgcgcgagcg cgggcgcgac
     9421 ttaatgccgc aaatccgcga gttcgccgag aaggttaagg ccaaagttaa agagcggaag
     9481 ggccgaaagt ggggcgagga taaattcacc cgctggctgc ggcagtacat ccattggatt
     9541 tactgtcttt acgccttcgc cgacaagccc aacccgcccg gcctgctgac cccgcccgga
     9601 gagcctaagt acgtcggcga ccaccgggcc gagttcgccg ccgagatatt cgccgcagcc
     9661 gagcggaggc ggcgcaactg ggacgcgccg cacccggcgg actgccttga gcgagaggcg
     9721 gagcgccgcg aggcggaggg gctggccgcg gagagaaagg agattgagga gcacctgtcg
     9781 agggaaagct atcgccgatg ggtggccgcg gccgcgatgg gcgctgtttc ggacggggag
     9841 ttgcgggaag gctttatgga acactacggg gacggcaaag gtgcgacggg gaaggatgat
     9901 accttcggac acatccaatc gatggaggcc tacctgaatc gctaggcagt cgtggaggcg
     9961 gtttgcgcag aaaaccgccg cgcctaacaa cggcatgcac ccgaccgcga acagcgcggc
    10021 tttcatccgc aagacttgaa tgcttgttta gctgtgtgcg cggcgggtga tgccgggcgt
    10081 taggtgctcg cgctgaatac acgcgattag attgtatgtg ctttaaggcc cactatgata
    10141 ctctgacgcg cctatgaaac gctgccccca gtgccatcag acatacacgg acgaaaccct
    10201 taaattctgc cgtgatgatg gcacgcttct tcaggccgat aat
//
LOCUS       DASPKR010000277         5631 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1460309, whole genome shotgun sequence.
ACCESSION   DASPKR010000277 DASPKR010000000
VERSION     DASPKR010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5631)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5631
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1460309"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..616
                     /gene="tyrS"
                     /locus_tag="VD968_07745"
     CDS             <1..616
                     /gene="tyrS"
                     /locus_tag="VD968_07745"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HYE14315.1"
                     /translation="MGRNLQREYNQEPQVAVITPLLEGTDGVQKMSKSLGNYVGIDEP
                     PQEIFGKVMSISDDLMWRYYELLTDLPAETVERMRLSVKAGGLNPRGAKVELAKRIIT
                     DFHSAEAASAAEEEFDRIFKRKGVPDDVEERGLPAQTFKLPRLLVEAGLAPSMAEARR
                     LIEQGGVRLDGERAARHEAEVEVAKGRALLIQVGKRRFMRVRGE"
     gene            641..1114
                     /locus_tag="VD968_07750"
     CDS             641..1114
                     /locus_tag="VD968_07750"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HYE14316.1"
                     /translation="MSEENKALLRRWFEEVWNKGRSDAIDEMFAEEGVAHGLADASGA
                     ELRGPAHFREFHRSFRDAFPDICVTVEDVIAEGDLVTGRCSVCGVHRGAGLGFDATER
                     PVEFTGISIVRVRDGKIVEAWNNFDFLAMFQQLGAVQTVQPAAPAPYGGPLPSTD"
     gene            1123..1944
                     /locus_tag="VD968_07755"
     CDS             1123..1944
                     /locus_tag="VD968_07755"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HYE14317.1"
                     /translation="MSAAAPTDDTLVIETPERVPLHFALASIGNRFLACAFDHLLQIL
                     AMLVVFLALVWAGNLAGWYASVRDAPKWVWAVLIVALFLIWSGYFALFEWAWSGQTPG
                     KRWLRLRVIREDGRPVTFWEAAARNLVRIFDMMPFPFYSIGLTSVFISPRDQRVGDMV
                     AGTVVVREREAQAPSFTDVFSAPTSDAALRRSFKPVPFTANVNLLTEGEIEVVEAFLR
                     RRWDLDEMPRQWMAWRIATPVLHKLQPAFDPDTFTYEGFLEELLHRYRAAHRFAD"
     gene            complement(2021..3361)
                     /locus_tag="VD968_07760"
     CDS             complement(2021..3361)
                     /locus_tag="VD968_07760"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HYE14318.1"
                     /translation="MTDKKFTAAARRGCVLALALLLLHGSGAARAQSINSLDRDRARG
                     MLDVIKKALKEHYYDPTYHGMDVEARFKVSKEKIDAAQTLSQAFGVIAQTLVDLNDSH
                     TVFLPPPRAARVEYGWRMQMVGDKAFIVAVRPGSDAEKQGVREGDEILSVDGFRPTRD
                     TLWKMVYRYFALAPAASVRMELKPPGGEPRTLDLKAKVTQLKRVLDFTGQGSMEDIIT
                     YLREAENAEHYTRHRYHEDMGGVMIWKMPNFYDDNDGVDRMMGRVKKHKALILDLRGN
                     PGGAIRTLERLAGHFFDRDVKIADLKARKERKPMTAKAQGSPFKGQLVVLLDSKSGSS
                     AELFARVMQLEKRGTVIGDRSAGAVMQSKVHPFEMGAGSVVPYAVSITDADLIMSDGK
                     SLEHVGVTPDELVLPTAEDMAAKRDPVLARAAALVGLNLTPEKAAALFPVEWQK"
     gene            3569..4750
                     /locus_tag="VD968_07765"
     CDS             3569..4750
                     /locus_tag="VD968_07765"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HYE14319.1"
                     /translation="MAQDIFILGGKRTPMCQYVGALKDVKAIDLAATAARGALEATGL
                     APEDVDHTVVGNALQTSGDAIYGARHVALKAGVPADRPALTVNRLCGSGIQSVVSGAH
                     MILLGEARTALVGGMESMSMAPHVIYGARSGFGLGQGKLEDSLMVALLDTYCNTTMAG
                     TAENLARRYEISREEQDEYALRSQQEAKRAQDAGVFAEEIVPVEVKTRKGLKLVEADD
                     HLRPETTLEVLAKLPTAFSTDGFVTAGNASGIVDGAAMLTIAGSDFVSERGVKPLGRI
                     VSWAYAGVEPDVMGIGPVPAVRKALEKAGLTLEQIDLVEVNEAFACQYLAVEKELGLD
                     RSKTNVNGGAIALGHPLGASGTRLILTALMELRRRGGRYGLASACIGGGQGIAIIFER
                     V"
     gene            5167..>5631
                     /locus_tag="VD968_07770"
     CDS             5167..>5631
                     /locus_tag="VD968_07770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14320.1"
                     /translation="MPNPPFSQNWSSASLITANDDWSGVPGIQGFLGQDITTTTGADP
                     RTLLGTSSAQNDLDVIANQSNPNTLTSGGVAEFDGIANPTIALNGSATADAPYIVINL
                     DTTGLSNVKVSYNLRDLDASADNAAQQVALHYRVGNSGSYVNLPDGYVADATE"
BASE COUNT          904 a         1979 c         1807 g          941 t
ORIGIN      
        1 gatgggccgc aacctccagc gcgagtacaa ccaggagccg caggtggccg tcatcacgcc
       61 gctcctggaa ggcaccgacg gcgtccagaa gatgtcgaag tctttgggca actacgtcgg
      121 cattgacgag ccgccgcagg agatattcgg caaggtcatg tccatctccg acgacctgat
      181 gtggcgctac tacgagcttc tgacagacct gccggcggaa acggtcgagc gcatgcgcct
      241 ctccgtcaag gccggcggcc tcaacccgcg cggcgccaag gtggagctcg ccaagcgcat
      301 catcacggac ttccactcgg ccgaggccgc gtcggccgcc gaggaggagt tcgaccgcat
      361 cttcaagcgc aagggggtcc ccgacgacgt ggaggagcgc gggctgcccg cgcagacctt
      421 caagctgccg cgcctgctcg tcgaggccgg cctcgcgccc tcgatggccg aggcccgccg
      481 cctcatagag cagggcggcg tccgcctcga cggcgagcgc gccgcccgcc acgaggccga
      541 ggtcgaagtc gcgaaggggc gcgccctcct catacaggtc ggcaagcgcc gcttcatgcg
      601 cgtgcgcggc gagtgacctc atacggaaag gagtaacgcg atgtctgaag agaataaggc
      661 gctgctgcgc cgctggttcg aggaggtttg gaataagggg cggtccgacg cgattgacga
      721 gatgttcgcg gaggagggcg tggcgcacgg gctcgcggac gcgagcggcg cggagctgcg
      781 cggccccgcg cacttccgcg agttccaccg tagcttccgc gacgccttcc ccgacatctg
      841 cgtcacggtc gaggacgtga tcgccgaggg cgaccttgtc accggccgct gctcggtctg
      901 cggcgtccac cgcggcgccg ggctcggctt cgacgcgacc gagcgccccg tggagttcac
      961 gggcatctcc atcgtgcggg tgcgcgacgg caagatcgtc gaggcgtgga acaacttcga
     1021 cttcctcgcc atgttccagc agctcggcgc cgtccagacc gttcagcccg cggcccccgc
     1081 gccttacggc gggccgctcc cctcgaccga ctgacgacga ccatgtccgc cgccgcaccg
     1141 accgacgaca cgctcgtcat cgagacgcct gagcgcgtgc cgctgcactt cgcgctggcc
     1201 tcgataggca accgctttct cgcctgcgcc ttcgaccacc tgctgcaaat cctcgccatg
     1261 ctggtcgtct tcctcgcgct cgtgtgggcc ggcaacctcg ccggctggta cgcgagcgtc
     1321 cgcgacgcgc cgaagtgggt ctgggccgtg ctcatcgtcg cgctcttcct catctggtcg
     1381 ggctacttcg cgctcttcga gtgggcttgg agcgggcaga cgccgggcaa gcgctggctg
     1441 cgtctgcgcg tcatacgcga ggacgggcgg cccgtcacct tctgggaggc ggcggcgcgg
     1501 aacctcgtcc gcatattcga catgatgccg ttccccttct actccatcgg cctcacgtcg
     1561 gtcttcataa gcccgcgcga ccagcgcgtg ggcgacatgg tcgccggcac cgtcgtcgtg
     1621 cgcgagcgcg aggcgcaggc gccctccttc accgacgtgt tctcagcgcc gacgagcgac
     1681 gcggcgctcc ggcgctcgtt caagcccgtg ccgttcaccg cgaacgtcaa cctcctcacg
     1741 gagggcgaga tcgaagtggt cgaggcattc cttcgccgcc gctgggactt ggacgagatg
     1801 ccccggcagt ggatggcatg gaggattgcc actcccgtcc tgcacaagct acagcccgcc
     1861 ttcgaccccg acacgttcac atacgaaggc ttcctcgaag agctgctcca ccgctaccgc
     1921 gccgcccacc gcttcgccga ctgaaaacat cccctagacc cccgagggct ttcggagcaa
     1981 ctcaggcgcc gaacgccctg gcggtgcgct aatgacggcc ttacttctgc cactctacgg
     2041 ggaagagcgc ggcggccttc tcgggcgtga ggtttagccc gacgagcgcg gcggcgcgcg
     2101 ccagcaccgg gtctcgtttc gccgccatgt cttcggccgt cggcagcacc agctcgtccg
     2161 gcgtgacgcc gacgtgctcg aggctcttgc cgtccgacat gatgaggtct gcgtccgtga
     2221 tgctgacggc gtaggggacg acggagccgg cgcccatctc gaaggggtga accttcgact
     2281 gcatgacggc ccccgccgag cggtcgccta tgaccgtccc acgcttctct agctgcatga
     2341 cccgcgcgaa cagctcggcg ctggagcccg acttgctgtc caagagcacg acgagctgcc
     2401 ccttgaaggg gctgccctgc gccttggccg tcatcggctt gcgctccttg cgcgccttga
     2461 ggtcggctat cttcacgtcc ctgtcgaaga agtggcccgc cagccgctcc agggttcgga
     2521 tggctccgcc ggggttgccg cgcaggtcga gtatgagcgc cttgtgcttc ttgacgcggc
     2581 ccatcatgcg gtcaacgccg tcgttgtcgt cgtagaagtt cggcatcttc cagatcatta
     2641 cgccgcccat gtcctcgtgg tagcggtggc gcgtgtagtg ctcggcgttc tcggcctcgc
     2701 gcaggtaggt gataatgtcc tccatgctgc cctggcccgt gaagtcgagg acgcgcttga
     2761 gctgcgtgac cttggccttg aggtcgagcg tgcgcggctc gccgcccgga ggcttaagtt
     2821 ccatgcggac ggaggccgcc ggcgcgagcg cgaagtagcg atagaccatc ttccagagcg
     2881 tgtcgcgcgt cgggcggaag ccgtccaccg agaggatttc gtcgccctcc ctgacgccct
     2941 gcttctcggc gtcgctgccc ggccggacag cgacgatgaa tgccttgtca ccgaccattt
     3001 gcatgcgcca gccgtactcg acgcgcgccg cgcgcggggg cggcaggaag acggtgtgcg
     3061 agtcgttgag gtcaacgagc gtctgcgcga tgacgccgaa ggcctgactg agcgtctgcg
     3121 ccgcgtctat cttctccttc gagaccttga agcgcgcctc cacgtccatg ccgtggtagg
     3181 tcgggtcgta gtagtgctcc ttgagcgcct tcttgataac gtcgagcatg ccgcgcgcgc
     3241 ggtcgcggtc gaggctgttg atggactgcg cgcgcgccgc cccggagccg tgcaatagca
     3301 gcagcgctag ggcgagcacg cagccgcgcc gggcggcggc cgtgaacttt ttgtcggtca
     3361 ctggggtaaa gctccttcgg ttctgtcgag tgtaagggag tcgggtcgct ctggggcggc
     3421 gggagatttt acagtcgggg cggggcggcc gcaagtggcg agcggggtcg cggcggggcc
     3481 gcaattgacg cgcccgcggg gcctccgtta cactcgcccg ttcatctaaa ggtctgaatt
     3541 ttctaccgag aggataaggc aggcactcat ggctcaggac atcttcatac tcggcggcaa
     3601 gcgcacgccg atgtgccagt acgtcggcgc gctcaaggac gtgaaggcca ttgatctggc
     3661 ggcgacggcg gcgcggggcg cgctcgaagc gacgggcctc gcgcccgagg acgttgacca
     3721 caccgtcgtc ggtaacgcct tgcagacttc cggcgacgcc atctacggcg cgcgccacgt
     3781 cgccctgaag gcgggcgtcc ccgcagaccg cccggcgctc accgtcaacc gcctctgcgg
     3841 cagcggcatt cagtccgtcg tctcgggcgc ccacatgatc ctgctcggcg aggcgcggac
     3901 ggcgctcgtc ggcggcatgg agtcaatgtc aatggcgccg cacgtcatct acggggcgcg
     3961 ctctggcttc gggctcggtc agggcaagct cgaagactcg ctgatggtcg cgctgctcga
     4021 cacctactgc aacacgacga tggccggcac ggccgagaac ctcgcgcgcc gctacgaaat
     4081 ctcgcgcgag gagcaggacg agtacgcgct gcgctcgcag caggaggcca agcgcgcgca
     4141 ggacgcgggc gtcttcgccg aggagatagt ccccgtcgag gtcaagaccc gcaagggcct
     4201 caagctcgtc gaggcggacg accacctccg gcccgagacc accctcgaag tgctcgcaaa
     4261 gctcccgacc gccttcagca cggacggctt cgtcacggcc ggcaacgcct ccggcatcgt
     4321 tgacggcgcc gccatgctca ccatcgccgg ctcagacttc gtcagcgagc gcggcgttaa
     4381 accgctgggc cgcatcgtgt catgggccta cgcgggcgtc gagccggacg tgatgggcat
     4441 cggccccgta ccggccgtcc gcaaggcact tgagaaggcc ggcctcacgc tcgaacagat
     4501 cgacctcgtc gaagtcaacg aggctttcgc ctgccagtac ctcgccgtgg agaaggagct
     4561 gggcctcgac cgctcgaaga cgaacgtcaa cggcggcgca atcgccctcg gccacccgct
     4621 cggcgcatcg ggcacgcgac tgatactcac ggccctcatg gagctccgcc gccgcggagg
     4681 gcgctacggc ctcgcctccg cctgcatcgg cggcggccag ggcatcgcca tcatcttcga
     4741 gcgcgtttaa accctctggc gggcgccctc gccgcgccct cgctccaaat ctgtcagcca
     4801 agttttaatg ctgattgaac ctaaagttat ccccggcgga agcaacttcc gggcggggtc
     4861 gcgcatcttt ttcccgtccg cgcccccgac agcttgacct cggtttaaat aaagagtaaa
     4921 agcacgctcg accttcgcgc tccggcgtct ttactcggca agcctctgta gaggcgcttc
     4981 tccaatttaa tcacccgaaa ggaaagtcta atgctcccac ccaacggcag acgactgtct
     5041 gcccgcctgc gccgcctcgc cgcaccgcgc tcgcgctcga ggttctcggc cttcggtttg
     5101 tcactccttt tactctcgca attcttaatc atcccgatcc cggccagggc gaacacttcg
     5161 ccgcaggtgc cgaacccccc gttctcgcag aactggagca gcgcctcgct catcacggcc
     5221 aacgacgact ggtcgggcgt tcccggaatt caaggcttcc tcggccagga cattacgacc
     5281 acgaccgggg ccgacccgcg aacccttctc ggcaccagct ctgcgcagaa cgacctggac
     5341 gttatcgcca accagagcaa cccgaacacg ctcacgagcg gcggcgtcgc ggagttcgac
     5401 ggcatcgcca acccgaccat cgccctcaac ggctccgcta cggcggacgc gccctacata
     5461 gtcattaacc tagacacgac gggactctcc aacgtcaagg tctcctacaa cctccgcgac
     5521 ctcgacgcct cggccgacaa cgccgcgcag caggtcgctc tccactaccg cgtcggcaac
     5581 tcgggcagct acgtgaacct gcccgacggc tacgtcgccg acgcgaccga g
//
LOCUS       DASPKR010000278         2280 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_424966, whole genome shotgun sequence.
ACCESSION   DASPKR010000278 DASPKR010000000
VERSION     DASPKR010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2280)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2280
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424966"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VD968_07775"
     CDS             complement(<1..245)
                     /locus_tag="VD968_07775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14321.1"
                     /translation="MTTDACEVLEVGMGAEELVGALLGLDRSRGLHLLDSCGARGDDA
                     RLLIAGFDPVETVEARGEELLTRARGTRTPRARRGHVL"
     gene            323..1570
                     /locus_tag="VD968_07780"
     CDS             323..1570
                     /locus_tag="VD968_07780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HYE14322.1"
                     /translation="MRRPSLRVKLAVVACSVVAGLLIFEVFLRAVGYTYPIFYEPDEA
                     RGYRLQPGREGWHEKEGRSYVRINSDGLRDGEHSKQKPPGTLRVAVLGDSYAEAMQVE
                     QEEAFWSVLERRLTGCPALAGRAVEAINFGVSGYGTAQELITLREKVLAYSPDVVLLA
                     VTTNNDQIDNVRALKNADEIPYFVLRGGQLVLDDSFRDAAAFRRRTSWLGRLGRWLHA
                     RLRFVQAVHHAQAALKSRLAARRARRMMEEEERRKAARPAQAAPPPQPAPRGGEFDLL
                     VNMVYAEPRDETWREAWVVTEMLIAETRREVEARGARFVVATLSNPIQVYPDPGARAA
                     FMARAGAVGDLFYPDRRIAELGRREGFPVVTLAPELQAHADANKIFLHGFPGDLGNGH
                     WNRDGHRVAGELLARELCALLPR"
     gene            complement(1582..>2280)
                     /locus_tag="VD968_07785"
     CDS             complement(1582..>2280)
                     /locus_tag="VD968_07785"
                     /inference="COORDINATES: protein motif:HMM:NF014788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HYE14323.1"
                     /translation="PVVSGNVSFYNETEGRGIHPTPVVGMVGLVEDVRRVVTQGFKRE
                     GQLVALVGEQGEDLGASEHASVVLGQTVEQMIESGARVPRLDLGRERAVQETVLRAAE
                     AGLLQSAHDCSDGGLAVALAECCFSSLGRAAVGAEVELEGGRVTTAAHLFGETPSRVV
                     VSFDESERARLEEIASEAGAPLTVIGRTGGARLRVSVGGEETVNQEVGELESFWRSAL
                     GKKLRAEVIAAAAE"
BASE COUNT          340 a          852 c          770 g          318 t
ORIGIN      
        1 agcacgtggc cgcgccgggc cctcggcgtc cgtgtgccgc gcgcgcgcgt gagaagctct
       61 tcgccgcggg cctcgacggt ctccacgggg tcgaagcccg cgatgaggag ccgcgcgtcg
      121 tcgccgcgcg ccccgcagct atcgagcagg tgcaggccgc gcgagcggtc gagccccaag
      181 agcgcgccga caagttcttc ggcccccatc ccgacctcaa gcacctcgca ggcgtcagtc
      241 gtcattctcg tctcttgcgc gcggcggcgg cgggaaatta taactgaccg ctgccgctat
      301 gacttcagcc ggagagagcg aggtgagaag gccgagcctg cgcgtcaagc tcgcggtcgt
      361 ggcctgctcc gtcgtcgccg ggctcctgat attcgaagtc ttcctgcgcg ccgtcgggta
      421 cacctaccca atcttctacg agccggacga ggcgcgcggc taccggctac agcccggccg
      481 cgagggctgg cacgagaagg aagggcgctc ctacgtccgc atcaactcgg acggcctgcg
      541 cgacggcgag cactccaaac agaagccgcc ggggacgctg cgcgtcgccg tcctcggcga
      601 ctcttacgcg gaggccatgc aggtcgaaca ggaggaggct ttctggtcgg tgttggagcg
      661 ccgcctgacg ggctgcccgg cgctggcggg ccgcgccgtc gaggccatca acttcggcgt
      721 ctcgggctac gggacggcgc aggagttaat cacgctgcgc gagaaggtct tggcctactc
      781 gcccgacgtg gtgcttctcg ccgtgacgac caacaacgac cagatagaca acgtgcgcgc
      841 cctcaagaac gcagacgaga taccttactt cgtcctgcgc ggaggccaac tggtgctcga
      901 cgactcattc cgcgacgcgg ccgccttccg ccgccgcacc tcctggctcg gccggctcgg
      961 gcgctggctc cacgcccgcc tgcgctttgt gcaggccgtc caccacgccc aggccgcgct
     1021 caagtcgagg ctcgccgctc gccgcgcgcg ccggatgatg gaggaggaag agcggcgcaa
     1081 ggcggcccgg ccagcgcagg ccgcgccgcc gccgcagccc gcgcccaggg gcggcgagtt
     1141 cgacctactc gtcaacatgg tctatgcgga gccgcgcgac gagacctggc gcgaggcgtg
     1201 ggtggtgacg gaaatgctca tcgccgagac gcgccgcgag gtggaggcgc gcggcgcccg
     1261 cttcgtcgtc gccacgctga gcaaccccat acaggtttac cccgacccgg gggcgcgcgc
     1321 cgccttcatg gcccgcgccg gcgctgttgg tgacctcttc taccccgacc gccgcatcgc
     1381 cgagctgggg cgccgcgaag gcttccccgt cgtcaccctc gccccggagc tacaggccca
     1441 cgccgacgcg aacaaaatct ttctccacgg cttccccggc gacctcggca acggccactg
     1501 gaaccgcgac ggccaccgcg tcgccggcga gctgctcgca agggagctgt gcgcgctcct
     1561 gccgcgctaa gcggcgcggc ttcactccgc cgccgccgcg atcacttcgg cccggagctt
     1621 tttgccgagc gccgagcgcc agaacgattc gagctcgccg acttcctgat taacagtctc
     1681 ttcgccgccg acgctgacgc gcaggcgcgc gccgcccgtc cggccgatga cggtgagggg
     1741 cgcgccggcc tccgacgcaa tctcttccag gcgcgcgcgc tcgctctcgt cgaagctcac
     1801 gacgacgcgc gagggcgtct cgccgaagag gtgcgcggca gtcgtgacac ggccgccctc
     1861 aagctcgacc tcggcgccga cggccgcgcg gccgagcgaa gagaagcagc actcggccag
     1921 cgcgacggcg aggccgccgt ccgagcagtc gtgcgccgac tgcaaaaggc ccgcctcggc
     1981 cgcgcgaagg actgtctcct gcacggcgcg ctcccgcccc aaatcgaggc gggggacgcg
     2041 cgcgcccgac tcgatcatct gttcgaccgt ctgcccgagc acgaccgacg cgtgctcgct
     2101 cgcgccgagg tcttcgccct gctcgccgac gagcgcgacc agttgcccct cgcgcttgaa
     2161 cccttgagtg acgacgcgcc gaacgtcctc gaccagcccg accatgccga cgacgggcgt
     2221 ggggtgtatg ccgcgcccct cggtctcgtt gtagaaggag acgttgccgg agaccacggg
//
LOCUS       DASPKR010000279         4583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_682394, whole genome shotgun sequence.
ACCESSION   DASPKR010000279 DASPKR010000000
VERSION     DASPKR010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4583)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4583
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_682394"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..814)
                     /locus_tag="VD968_07790"
     CDS             complement(<1..814)
                     /locus_tag="VD968_07790"
                     /EC_number="4.1.3.3"
                     /EC_number="4.2.1.41"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012904.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009436 - glyoxylate catabolic process
                     [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HYE14324.1"
                     /translation="MATHSTKGGALRGKLAGVLVPFPTPFDAGGGVDGRAVRSNIERW
                     NETGVRGYVVLGSTGERAHLTERERAEVIESARAAVPDSMAFIVGVGGHGTRPTIEEA
                     RRAAAAGADALLVITPHFYKSAMTQGALAEHFEAVADFSPAPVILYSIPQNTGVALAP
                     DTVARLAGHENVAGIKDSSGDVVNLSETLRLTAGRDDFVVTTGHAGVFYPSLCAGVTG
                     AILAAACVAPRLCVALYEAHRAGEHARALDLQWRLAPVAAAVTTRFGIGGLKY"
     gene            complement(872..2872)
                     /locus_tag="VD968_07795"
     CDS             complement(872..2872)
                     /locus_tag="VD968_07795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14325.1"
                     /translation="MKDKITRLLVIAALSLTCGVAASGRQSQPKDVSVNQLREEIAKL
                     EAVENDPSTPPEVRELNRSFLQQRRRQLNALLQTRAASLRQYLSRMKGHLTPDEVKVV
                     ERSIDDLEQGLSAAETTPAAGLAGRRVETPAGPLPDTPASALDAAPVSTVVAGPRPAA
                     RATDPAVPRVSSAAPILNPAPAQLPPVAGQEFPTPKDCSTFNASPNAFSLYDRYVCTL
                     IEETARRKANGDPPLGFSGPEFFYMTVILVSQKLRSTFLVEAEEARVDKQIESPSSSS
                     GSTSLVTKGGTPAILGLAVENGALEREVSGTTITFRGNPVGIVETLAGKGLLSGYEDD
                     SPSTRFLRKTSFSFSFDTDRGASPGIFLADRQQLSSVSARFEFINRRDPRSDAHRTDW
                     QNFLATRAQPFLSTFVNSKGVLVETIQGQGNDPDVDRWKDPALQAWFEETQSSLVRAA
                     PGNVEAVFKAQLTKLPLDELSPDTVAALTAFARQFGVYVEGRQRVLDKVARGTVATFE
                     FVNNREVNAPDTSNFKGIYETSFGGRADFTFNGSLTLFNKRLAGPGLKRVRDFQFAAQ
                     LDLPFGDPAGAGQFVFSGAAKYERLLENASTQAGTFVPGTKGDIVIGQLKLVIPIKTL
                     GVRFPISATFANRTELIKEREIRGNFGFTFDFDSILARFKPF"
     gene            3499..4500
                     /locus_tag="VD968_07800"
     CDS             3499..4500
                     /locus_tag="VD968_07800"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HYE14326.1"
                     /translation="MKKEGGRLDLLIVGAGPAGLSAADVAAREGLDYLVVEKGLIANT
                     VYNYPVGLTVFSTTNELELREGELRPCREKPTREELLSYYVSFALTHDLRINTEEEVK
                     SLERLSPEGFRVRTSRAEYEAARLLVCTGAQARPRRLNVPGEDLPKVRHRFVEPFPYV
                     RKDVLVVGGGNSAAEAALFLSEGGARATFAIWPADWENRDPKKGCIKHWVRGPLEREI
                     EEGRLRLLLFSEVEEIAEREVRIKDASGASVTLPNDAVFVLVGADADLTLLRSVGVRT
                     EKSGLTEVPAYDPETFETNVPGLYVAGHFTNSRHIKEAIAVPRRVVPLIAQSLRATV"
BASE COUNT          787 a         1451 c         1493 g          852 t
ORIGIN      
        1 cgtacttgag gccgccgatg ccgaagcgtg tggtgacggc cgccgccacg ggcgcgaggc
       61 gccactgcaa gtctagcgcg cgcgcgtgct cgcccgcgcg gtgcgcctcg tagagcgcga
      121 cacacaggcg cggcgcgacg cacgcggcgg cgagtatcgc acccgtcact cccgcgcaga
      181 gcgaagggta aaatacgccc gcgtggcccg tcgttacgac gaaatcatcg cggccggccg
      241 tcaggcgcag cgtctcggag aggttgacaa cgtcgccgga gctgtccttt atgccggcga
      301 cgttctcgtg gccggcgagg cgcgcgaccg tgtcgggcgc gagcgcgact cctgtgttct
      361 gcgggatgct atagaggatt accggagcgg gcgaaaagtc tgcgacggcc tcgaagtgct
      421 cggcgagcgc tccttgcgtc atcgccgact tgtagaagtg gggcgtgatg acgagcagcg
      481 cgtcggcccc ggcggcggcc gctcgccggg cctcctcgat tgtcgggcgc gtgccgtgtc
      541 cgcccacgcc gactatgaag gccatgctat cggggacggc cgcgcgcgcc gactctatga
      601 cctcggccct ctcgcgctcc gtcaggtgcg cgcgctctcc cgtcgagcct agcacgacgt
      661 agccgcggac gcccgtctcg ttccagcgct cgatgttgga gcgcacggcc cggccgtcca
      721 ccccgccgcc cgcgtcgaac ggcgtgggga aaggcacgag cacgcccgcg agcttcccgc
      781 ggagcgcgcc cccctttgtc gagtgcgtcg ccaagcccgc gaattatagc caccgcgcgc
      841 tgcaaacacc aaaagcggcg cgctgagtga gttaaaacgg cttgaagcgg gccagtatgg
      901 aatcgaaatc aaaggtgaac ccgaagttac ccctaatctc cctttcctta atcaactcgg
      961 tgcggttcgc gaaggtagcc gagattggaa atctcactcc gagggtctta attgggatga
     1021 cgagcttgag ctgcccgatg acaatgtccc ctttcgtgcc ggggacgaac gtgccggcct
     1081 gcgtcgaggc gttctccaac agccgctcgt acttcgcagc cccggagaag acgaactggc
     1141 cggcgccggc gggatcgccg aacggtaagt cgagttgcgc cgcgaactga aagtcgcgca
     1201 cccttttcag gccggggccg gccagcctct tgttgaataa cgtcagtgag ccgttaaatg
     1261 tgaagtcggc ccgcccgccg aaagaggttt cgtagatgcc cttgaagtta gaagtgtcgg
     1321 gggcgttcac ctcacggtta ttaacgaatt cgaaggtcgc gaccgtcccc ctcgccacct
     1381 tatcgagcac gcgctgccgc ccctccacgt agacgccgaa ctggcgggcg aaagcggtca
     1441 gcgcggcgac cgtgtccggc gacaactcgt cgagcggcag tttggttaac tgtgctttaa
     1501 ataccgcttc aacgttgccc ggcgcagccc tcaccagtga gctctgcgtt tcctcgaacc
     1561 atgcttgcag cgccgggtct ttccacctgt caacgtccgg gtcgttacct tgcccctgaa
     1621 tcgtctcgac gagcacgccc ttactgttga cgaaagtgct caggaaaggc tgcgccctcg
     1681 tcgccagaaa gttctgccag tcagtcctgt gcgcgtcgct ccgcgggtcg cgccggttga
     1741 tgaactcgaa gcgggcggag acggaggaga gttgctgtct gtcggccaaa aagatgcccg
     1801 ggctggcgcc cctgtcggtg tcgaaggaga acgagaagga ggttttcctc aagaagcgcg
     1861 tgctcggact gtcgtcctca taacccgaga gcagcccctt gcccgccagt gtctcgacga
     1921 tgccgacggg gttgccgcgg aaggtgatag tcgtcccgct gacctcacgc tccaaggcgc
     1981 cgttctcgac ggctaagccg aggatggccg gcgtgccgcc cttcgtcacg agtgaagtgc
     2041 tgcccgaact cgacgaaggg ctctcgatct gcttgtccac gcgcgcctcc tcggcctcga
     2101 ctaaaaacgt agacctgagc ttttgcgaga cgaggattac tgtcatgtag aagaactcag
     2161 ggccggagaa gcctagcgga gggtcgccgt tagccttcct cctggcggtt tcctcgatga
     2221 gcgtgcacac gtacctatcg taaagggaga aggcattcgg gctcgcgttg aaggtgctac
     2281 agtccttagg cgtggggaac tcctgtccag cgacgggggg tagttgggcc ggggccggat
     2341 ttaggatcgg cgctgcgctg cttacgcgcg ggacggcggg gtctgtggcg cgggcggcgg
     2401 gccgcgggcc agcgaccacc gtagagacag gagcggcgtc gagggccgaa gcgggggtgt
     2461 cgggcaaagg gccggccggc gtttctacgc gccggccggc aaggccagcc gcgggcgtag
     2521 tctcggcggc cgacaggcct tgctcaagat catcaatgga gcgctcgaca acttttacct
     2581 catctggggt gagatggccc ttcattctcg aaaggtactg ccggagggac gccgccctcg
     2641 tttgcaacag cgcgttgagt tgccggcggc gctgctgcaa aaagctccgg ttcaactccc
     2701 tcacctctgg cggcgtggac gggtcatttt cgacggcctc cagcttcgca atctcttccc
     2761 tgagttggtt gacgctcacg tccttcggct gtgactgccg cccggatgcg gcgacgccgc
     2821 acgtcagaga aagcgcagct ataacgagca gacgtgtgat tttgtctttc atggctgttg
     2881 ccctcgtgtt tggtgattac tgcgcgcgcc gaaacctgta ctcgcacgcg tttgtcggca
     2941 caccgaacga tccttggctc accgtgtctg tgtcttggcc acccgcgcta cccgttagct
     3001 tcaccgtgta agtcccacct gacccgctgt aggtgaatag caggtttaac ttgcggcggt
     3061 tgttacctga tggggccgtt attgaaagct gctggccttg gttcaggatg cccccgtccc
     3121 cgtccaagtc gtaattcact agatgagccg tgccgctggc atcaacctcg atagcgaccg
     3181 tctcgttggc cccaatggca tactgccgtt caccgatttt ttgcattgat gtgctccttc
     3241 gcggcgtatt cccgcccgta gtagctactt gtcccgacgc cttcagtttc accctgagag
     3301 cgttacatcc ggtaataagc tcgggccgag attagataat tcatgcgggc gataaccggc
     3361 ccggcggcaa ccgaaaggca tctcatagat atatgagcga acttccgatt atgtttcagg
     3421 cgcctttagg cgggcgcagg gcgcgtgttt gcgggcgcga ggcgcgttgt gcgaggatgt
     3481 agtgtaaggc gataagggat gaaaaaggaa ggcggaaggc tggacttgct catcgtcggc
     3541 gcggggccgg cggggctttc ggcggcggac gtggcggcgc gcgaggggct cgactatcta
     3601 gtcgtggaga aggggctcat cgcgaacacg gtctataact accctgtggg cctcacggtc
     3661 ttctccacga cgaacgagct ggagcttcgc gagggcgagc ttcgcccctg ccgcgagaag
     3721 ccgacgcgtg aggagctgct ctcctactac gtgagcttcg cgctcacgca cgatctgcgc
     3781 ataaacacgg aggaggaggt gaagtctttg gagcggctct cgcccgaagg cttccgcgtg
     3841 cgaacctccc gggctgagta cgaggccgcg cgccttctcg tctgcacggg cgcgcaggcc
     3901 cgcccgcgac gcctgaacgt tcccggcgag gatttgccga aggtgcgcca ccgcttcgtc
     3961 gagcccttcc cctacgtccg caaggacgtg ctcgtagtcg gcggcggcaa ctcggccgcc
     4021 gaggccgccc tcttcctctc cgaggggggc gcgcgcgcga ccttcgccat atggcccgcg
     4081 gactgggaga accgcgaccc gaagaagggc tgcatcaagc actgggttcg ggggccgctt
     4141 gagcgcgaga tagaggaggg gcggctgcgg ctcttgctct tctcggaggt cgaagagata
     4201 gccgagaggg aggtcagaat caaagacgcc tcgggcgctt ccgtcacgct cccgaacgac
     4261 gcggtcttcg tcctcgtagg cgccgacgca gacctaacgc tcctgcgctc ggtgggcgtc
     4321 cgcacggaga agtcgggcct cacggaagtc cccgcctacg accccgagac cttcgagacg
     4381 aacgtccccg gcctctacgt cgcaggccac ttcacgaact cgcgccacat aaaggaggcc
     4441 atcgccgtcc cgcgccgagt cgtccccctt atagcgcagt cgctccgcgc gacggtctga
     4501 gccgccgcca cactcaaact cagtccgctt tagttttcgg aagggccgat gcggagcgtc
     4561 gccgtgttgc tcgcggcgcc gcg
//
LOCUS       DASPKR010000280         2998 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1717579, whole genome shotgun sequence.
ACCESSION   DASPKR010000280 DASPKR010000000
VERSION     DASPKR010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2998)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2998
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1717579"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VD968_07805"
     CDS             complement(<1..276)
                     /locus_tag="VD968_07805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14327.1"
                     /translation="MRVLVLDGNENQAVACVRSLARSGYSVSVGSSSSWSKAGWSRYC
                     RGTFQYPSPNESSRAFVARVAEEAGRERGTLVMPMTERTTLPLSEHRD"
     gene            complement(273..1541)
                     /locus_tag="VD968_07810"
     CDS             complement(273..1541)
                     /locus_tag="VD968_07810"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE14328.1"
                     /translation="MRILWVKAGRLLPVDTGGKIRSFNLLRQLAARHEVTLLSYYGGA
                     VDEEYESELRRELPGAEAVCTGAPEGSALAQGLHYLSRLPRPAPYAVTKFTSPVVRRL
                     VENWLGDGRFDVAVCDFLSASLNFPRRLATPSVLFQHNVESALWRRQARHEPNPLKRA
                     AFKMEAAKMSAYERAAVARFHHVIAVSEHDRGLMSEMTDAARITVVPTGVDLGLYRAA
                     FDGSGAEPDGPASPLVVFLGSMDWEANVDGVDYFCRDIWPSVLARVPRARFRIVGRNP
                     HPRVQRLASESVEVTGTVPSVVEHLREAAVFVVPLRVGGGTRLKIFEAMAAGKAVVST
                     TVGAEGLEVTHGRDVLLADDAASFADAVVTLLTDGGRRRELERAAAELAARHDWSAVV
                     GRFEGALLKAIDAARTEGVTAGAVARELNV"
     gene            complement(1565..>2998)
                     /gene="asnB"
                     /locus_tag="VD968_07815"
     CDS             complement(1565..>2998)
                     /gene="asnB"
                     /locus_tag="VD968_07815"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HYE14329.1"
                     /translation="DYLANHATSGEETLFAGVRRLLPGHTMLWRDGELKIEKYWDVRF
                     SPDEGENGDSRGDEDYVAEWSELFRTAVRLRLMADVPLGMFLSGGIDSSAIAAVMSGL
                     VAEPVKTFSVAFREREANELAYARLVARKFKTDHHEVVVTPEDFFRELPRLVWHEDEP
                     LAHPSSVALYFVSRLASRHVKVVLTGEGSDEMLAGYDRYRKTVYNLALGARYHAWAPA
                     PLKRAARGAVASLPASSRFRQKLQRTFLCLTPDIETIYFDNFAVFSRSMQSGLLTREA
                     SERAGRPDPYARVTRYLEDAGSETLLGRLLYADTKTYLHELLMKQDQMSMAASVESRV
                     PFLDHKLIEYTARMPERLKLRGWTTKYVLRRAMRGVLPEEILTRRKMGFPVPVGAWFR
                     GAYSHVLDEYVTGPRARARNLFDPGFVEGVVARHRAGIENHDERLWSLVNFEMWMRRF
                     IDGEESGEATRPRPEEGAAEVAAAALT"
BASE COUNT          476 a         1058 c         1033 g          431 t
ORIGIN      
        1 gtcgcggtgc tcggagagcg ggagcgtcgt gcgctccgtc atgggcatca cgagcgtgcc
       61 gcgctcgcgc cccgcctctt cggccacgcg cgcgacgaag gcgcgcgacg actcgttcgg
      121 cgaagggtac tggaaagtcc ctcgacagta ccgagaccag ccggccttcg accacgaaga
      181 gcttgagccg accgagacgc tgtagcccga gcgagcgagc gagcgcacgc acgccacggc
      241 ctgattctcg ttgccgtcga gcacaaggac tctcatacgt tcaactcgcg ggcgacggcg
      301 cccgccgtca cgccttccgt gcgtgccgcg tcaatcgcct tcaggagcgc cccctcgaag
      361 cggccgacga cggccgacca gtcgtggcgg gcggcaagct cggcggcggc cctctcaagc
      421 tcgcggcgcc tccccccgtc cgtcaggagc gtcacgacgg cgtcggcgaa cgacgccgcg
      481 tcgtccgcca gcagcacgtc gcggccgtga gttacttcca gcccctcggc gccgacggtc
      541 gttgagacga cggccttgcc cgcggccatc gcctcgaaaa tcttgagccg ggtgccgcct
      601 ccgaccctga gcggcacgac gaagacagca gcctcgcgca ggtgctccac gacggaaggc
      661 accgtgcctg tgacctccac gctctctgac gcgagcctct gcacgcgcgg gtgcgggttg
      721 cggccgacga tgcggaagcg cgcccgcggc acgcgcgcga gcaccgacgg ccagatgtcc
      781 cggcagaagt agtccacgcc gtcaacgttc gcctcccagt ccatcgagcc gaggaagacg
      841 acgagcggcg aggcgggccc gtcaggctca gcgccgctcc cgtcgaacgc cgcgcggtag
      901 agcccgaggt caacgcctgt cggcacgacc gttatgcgcg cggcgtccgt catctccgac
      961 atcaacccgc ggtcgtgctc cgagacggcg atgacgtggt ggaagcgggc gacggccgcg
     1021 cgctcgtagg ccgacatctt cgcggcctcc atcttgaacg cggcgcgctt taacgggttc
     1081 ggctcgtgcc gcgcctgcct ccgccagagc gccgactcga cgttgtgctg gaagagcacc
     1141 gagggcgtcg ccagccgccg cgggaagttc agcgacgccg aaaggaagtc gcagaccgcc
     1201 acgtcgaagc ggccgtcgcc cagccagttc tctacgagcc ggcggacgac gggcgaggtg
     1261 aacttcgtca ccgcgtatgg cgccgggcgc ggcaggcgcg aaaggtaatg gagcccctgc
     1321 gcgagagccg agccctcggg cgcgccggtg cagactgcct cggcgcccgg caattccctg
     1381 cgaagctcgc tctcgtactc ttcatcaacc gcgccgccgt agtaggagag gagcgtcacc
     1441 tcgtggcgcg ccgcgagctg gcgcaggagg ttaaacgagc gaatcttccc gcccgtgtcc
     1501 accggcagca gccgcccggc tttaacccag agtatgcgca tgtaagggct ctcgtgcccg
     1561 gcctttaagt cagcgcggcg gccgcgacct cggcggcgcc ctcctccggg cgcggccgcg
     1621 tcgcctcgcc cgattcttcg ccgtctatga agcggcgcat ccacatctcg aagttaacga
     1681 gcgaccacag gcgctcgtcg tggttctcaa taccggcgcg gtggcgcgcg acgacgccct
     1741 cgacgaaacc cgggtcgaag aggttgcgcg cgcgggcgcg cggccccgtc acgtactcgt
     1801 cgaggacgtg ggagtacgcg ccgcggaacc acgcgcccac ggggacgggg aagcccatct
     1861 tgcggcgcgt cagaatctcc tcgggcagca cgccgcgcat ggcccttcgg agcacgtact
     1921 tcgtcgtcca cccgcgcagc ttcagccgct ccggcatgcg cgccgtgtac tcgatgagct
     1981 tgtggtcgag gaaaggcacc cggctctcga ccgacgccgc catgctcatc tgatcctgct
     2041 tcatcagaag ctcgtgcagg tacgtcttcg tgtcggcgta gagcagccgg cccaagagcg
     2101 tctccgagcc ggcgtcttca aggtagcgcg tcacgcgcgc gtaagggtcg ggccgcccgg
     2161 cgcgctcgct cgcctcgcgc gtgagcagcc ccgactgcat cgagcgcgag aagacggcga
     2221 agttgtcaaa gtagatggtc tcgatgtcgg gcgtaaggca gaggaacgtg cgctgtagct
     2281 tctgcctgaa gcgcgacgag gccgggagcg aggcgacggc gccgcgcgcc gcgcgcttga
     2341 gcggcgcggg cgcccacgcg tggtagcgcg cgcccagcgc gaggttatag acggtcttgc
     2401 ggtagcggtc gtagccggcc agcatctcgt cgctgccctc gcccgtcaag accaccttga
     2461 cgtggcggga ggcgagccgc gagacgaagt agagcgcgac gctagaaggg tgcgccaggg
     2521 gctcgtcctc gtgccagacg aggcgcggaa gctcgcggaa gaagtcctcg ggggtgacga
     2581 cgacctcgtg gtggtcggtc ttgaacttcc gcgcgacgag gcgcgcgtag gccagctcgt
     2641 tggcctcgcg ctcgcggaag gcgaccgaga aggtcttgac cggctcggcg accagcccgc
     2701 tcatcacggc cgcgatggcc gaggagtcta tgccgcccga aaggaacatc cccagcggca
     2761 cgtccgccat caggcgcagc cggacggccg tgcggaaaag ctccgaccac tctgcgacgt
     2821 agtcctcgtc gccgcgcgag tcgccgttct ctccctcatc ggggctgaag cgcacgtccc
     2881 agtatttttc gatcttcagc tcgccgtcgc gccacagcat cgtgtggccg ggcagcagcc
     2941 ggcggacgcc cgcgaagagc gtctcctcgc cggaggtcgc gtggttggcg aggtagtc
//
LOCUS       DASPKR010000281         4831 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_294834, whole genome shotgun sequence.
ACCESSION   DASPKR010000281 DASPKR010000000
VERSION     DASPKR010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4831)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4831
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294834"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VD968_07820"
     CDS             <1..273
                     /locus_tag="VD968_07820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14330.1"
                     /translation="RACLAAKGAGADFVKTSTGFAKSGATVADVALMRRTVGQEMGVK
                     AAGGVKGIGDARAMIEAGATRIGASVGVKIAQEASGVKTAATTAAY"
     gene            287..1297
                     /locus_tag="VD968_07825"
     CDS             287..1297
                     /locus_tag="VD968_07825"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE14331.1"
                     /translation="MAVRARALMTALLLCLSAGLPAGSAGRQGGAAQQAGAGLVTDVL
                     FTAVDKKGSAVTTLKKEDVRVLADGEPQEILRFERQRDLPLLLAVLIDVSNSQERVLP
                     AAKSAAVTFVSAAMTLGLDRAAVVTFTNDATLEQELTGDLSAVRAAIERVQPSPPNVA
                     YVSGAVIGKGGAPLPGSTALWDAVWTVSEEVLTRGRGPGRRAVVLITDGIDTGSRVKL
                     DEAVERAVQSDVVVYSVGMGDGDYGGVDKGDLRKLSERTGGRAFFPGKQKDLLPAFEQ
                     ILQQLQSQYVVSFATRHRPDGSFHKLRLEVVNPELRRQGVKLAHPEGFYAGNTSTAAP
                     SR"
     gene            1416..2714
                     /locus_tag="VD968_07830"
     CDS             1416..2714
                     /locus_tag="VD968_07830"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: protein motif:HMM:NF002772.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008878 - glucose-1-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HYE14332.1"
                     /translation="MAPKRPSILAVILGGGAGTRLAPLTLHRSKPAVPLGGKYRLVDI
                     PISNCINSDVLRIFVLTQYNSASLNKHIATTYRFSHFSNGFVEILAAEQTPQNPQWFQ
                     GTADAVRQVLPHIGDWGIDTLLILSGDHLYRMDYRKFIARHFETGADVTVSVIPFPRE
                     QAEDFGLLKADSEGRILEFREKPKGEALEEMRVDTTAFGLSEAEAARRPFLASMGIYV
                     FNFDLLKDLLSRDASWVDFGKQVIPAAIDCCNVQSYLFDGYWEDIGTISAFHQANLDL
                     TATIPKFNLFDTDAPVFTRARYLPPSKLNNCHINRSIVSEGCIMNRAVINRSLIGVRT
                     RIDFGANIEDTYVMGADYYQSIEDMEGDQRSGKPRIGIGEGSVIRNAIVDKNARIGAG
                     VRLVNERALSDDEAPDGSWFIRDGIIIVPKNGVVRDGTVV"
     gene            complement(2781..4076)
                     /locus_tag="VD968_07835"
     CDS             complement(2781..4076)
                     /locus_tag="VD968_07835"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE14333.1"
                     /translation="MKKSATLALLLCALFAPLAETLAQTRPRRVGQGAPATAGSPAPR
                     PTPAAPRQHAPQEEAGEEVGEDEVVRVNTALVTIPVSVLDRDGRFIPGLTKQDFRIQE
                     DGVEQEVAYFATVEQPFTVALLLDTSGSTRFRLEDIQDAAIAFLDQLRPDDRVIVISF
                     DDDVRVLSDATSDRRRLREAIRRTRTGEGTRLYDAVDLVIHQQLSRVTGRKAIVLFTD
                     GVDTTSKRASFQSTLADAEELDALIYPVQYDTYASQAGGGTRGGGNWPGQRRRGRRSR
                     KGEILADILGGILTGGNVRVGGGGNTGGGGGGAGSSPEDYRRGGEYLRRLAQLTGGRH
                     HSADDLRYLAQAFGDIAEELRRQYSLGYYPSRQSQVAERRQIRVRVRRPNLVVRARDS
                     YVYRPAGSAPADSTAQDNAAPRQAPILRPRQFDGRAGTR"
     gene            complement(4168..>4831)
                     /locus_tag="VD968_07840"
     CDS             complement(4168..>4831)
                     /locus_tag="VD968_07840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14334.1"
                     /translation="DEGWTRYVFDTFNVPFESLRDAGVRAGNLRARYDVIVLPSMRLR
                     EIVEGRENAPAEFAGGITEGGVEHLRKFVEEGGTLVCFDAASELAIKGFRLPLRNALE
                     GARSSEFYGPGSIVRLEVDSGHALARGLAREVDAYFVNSSAFVTTTPDAPSRVRTVAR
                     YAARDVLRSGWLLGDRQLAGKIALAEVPLGRGRVVLFGFRPQHRAQTWGTFPLVFNAL
                     ER"
BASE COUNT          771 a         1581 c         1729 g          750 t
ORIGIN      
        1 cgcgcgtgcc tcgcggcgaa gggcgcgggc gccgacttcg tgaagacctc gacggggttc
       61 gcgaagtcgg gcgcgaccgt ggcggacgtg gcgctcatgc ggcgcaccgt cgggcaggag
      121 atgggcgtga aggccgcggg cggcgttaag ggcataggcg acgcgcgcgc gatgatagag
      181 gccggcgcga cccgcatagg cgcctcggtc ggcgtcaaga tcgcgcagga ggcttcgggc
      241 gtgaagacgg cggcgacaac ggcggcttac tgataaggga atgacgatgg ctgtgcgcgc
      301 gagggctttg atgacggcgc tgctgttgtg cctgtcggcg gggcttcctg cgggaagcgc
      361 cgggcggcag ggcggcgcgg cacagcaggc cggggcgggg ctcgtgacgg acgtgctttt
      421 cacggccgtt gacaagaagg gctcggccgt gacgacactg aagaaggagg acgtgcgcgt
      481 gctcgccgac ggcgagccgc aggagatact ccggttcgag cgacagcgcg acttgccgct
      541 gctgctcgcc gtgttgatag acgttagcaa ctcgcaggag cgcgtgctgc cggcggcaaa
      601 gagcgcggcc gtcacgttcg tgagcgccgc catgacgctc gggctcgacc gcgccgccgt
      661 cgtcaccttc acgaacgacg cgacgctcga acaggagctg acgggcgacc tctcggccgt
      721 gcgcgcggca atcgagaggg tgcagccgtc gcccccgaac gtcgcctacg tttctggggc
      781 ggtcattggc aagggcgggg cgccgctgcc gggctcgacc gcgctctggg acgccgtctg
      841 gactgtgagc gaggaagtgt tgacgcgcgg gcgcggcccc ggccggcgcg ccgtcgtgct
      901 catcacggac ggcatcgaca cgggcagccg cgtcaagctc gacgaggcgg tcgagcgcgc
      961 cgtacagtcc gacgtggtcg tctatagcgt cggcatgggc gacggcgact acggcggcgt
     1021 ggacaagggc gacctgcgca agctttcgga gcgcacgggc ggccgcgcat tcttccccgg
     1081 caagcagaaa gacctgctgc ccgccttcga gcagatactc cagcagctac agtcgcagta
     1141 cgtcgtctcg ttcgccacgc gccacaggcc cgacggctcg ttccacaagc tccgcctcga
     1201 agtcgtcaac cccgagcttc gcaggcaggg cgtaaagctc gcgcaccccg agggcttcta
     1261 cgccggcaac acctcgacgg ccgcgccgag ccgctgaact cccgaccgcc gcctcgtgat
     1321 gaaaatggca caggcccgcg cttgaaacgc gcgggcctct cgtctatgct ctggggcaaa
     1381 gtaatcccag acaggctagc ggaaggtgag ggactgtggc cccgaagaga cccagcatac
     1441 tggccgttat cctcggcggg ggcgccggca cgcgcctcgc gccgctgacg ctccaccgct
     1501 cgaagccggc cgtcccgctc ggcggcaagt acaggctcgt tgacataccc atctcgaact
     1561 gcatcaactc ggacgtgctg cgaatcttcg tgctgacgca gtacaactcg gcgagcctca
     1621 acaagcacat cgcgacgacc taccgcttct cgcacttctc gaacggcttc gtcgaaatac
     1681 tggccgccga gcagacgccg cagaaccctc agtggttcca aggcacggcc gacgcagtcc
     1741 ggcaggtgct gccgcacata ggcgactggg gcatagacac cctgctcata ctctcgggcg
     1801 accacctcta ccggatggac taccgcaagt tcatcgcgcg ccacttcgag acgggcgccg
     1861 acgtcaccgt ctccgtcata cccttcccgc gcgagcaggc cgaggacttc ggtttgctta
     1921 aggccgactc tgaggggcgc atactcgagt tccgcgagaa gccgaagggc gaggcgctag
     1981 aggagatgag ggttgacacc acggccttcg gcctttcgga ggccgaggcc gcgcgccgcc
     2041 ccttcctcgc ctcgatgggc atctacgtct tcaatttcga cctgctcaaa gacctgttgt
     2101 cgcgcgacgc ctcctgggtt gacttcggca agcaggtcat cccggccgcc atagactgct
     2161 gcaacgtgca gtcgtacctg ttcgacggct actgggagga catagggact atctcggcct
     2221 tccaccaggc gaatttggat ttgacggcga cgataccgaa gttcaacctc ttcgacacgg
     2281 acgcgccggt gttcacgcgc gcgcgctacc tgccgccttc gaagctcaac aactgccaca
     2341 taaacaggtc aatcgtgagc gagggctgca taatgaaccg ggcggtgatt aaccgctcgc
     2401 tcataggcgt gcgcacgcgc atagacttcg gcgcgaacat agaggacacc tacgtgatgg
     2461 gcgccgacta ctaccagtcc atagaggaca tggagggcga ccagcgctcg ggcaagccgc
     2521 gcataggcat cggcgagggc tccgtcatac gcaacgccat cgttgacaag aacgcgcgca
     2581 tcggcgcggg cgtccgcctc gtcaacgagc gcgccctctc cgacgacgag gcgcccgacg
     2641 gctcctggtt cataagggac ggcatcatca tcgtccccaa gaacggcgtc gtgcgcgacg
     2701 gcacggtcgt ctgaaggctc gggagaagaa ggacggaaga ggagccgcct ttcgtggcgg
     2761 ctcctctttt ttcgtgtgat ttacctggtg ccggcgcggc cgtcgaactg gcggggccgg
     2821 aggatgggcg cctggcgcgg ggcggcgttg tcctgtgccg tcgagtcggc gggcgcagag
     2881 cccgcgggcc tatagacgta gctgtcgcgg gcgcgcacga ctaggttggg gcggcgcact
     2941 cgcacacgta tctgccggcg ctccgcgacc tgcgactggc gcgaagggta gtagccgagg
     3001 ctgtactgcc ggcgaagctc ttcggctatg tcgccgaacg cctgtgcgag gtagcgcagg
     3061 tcgtcggcgc tgtggtggcg gccgccggtc aactgcgcga gccgccgcag gtattcgccc
     3121 ccgcgcctgt agtcttcggg cgaagagccc gcgccgcctc cgccgccgcc agtgttgccg
     3181 ccgcccccga cgcgcacgtt gccgcccgtc agtatgccgc cgaggatgtc ggcgagtatc
     3241 tcgcccttgc gcgagcggcg cccgcggcgg cgctggccgg gccagttgcc gcccccgcgc
     3301 gtgccgccgc cggcctgcga ggcgtaggtg tcgtactgca cggggtagat gagggcgtcc
     3361 agctcctcgg cgtcggccag cgtgctctgg aagcttgcgc gcttgctcgt cgtgtcaacg
     3421 ccgtcggtga agaggactat ggccttccgg cccgtgacgc gcgagagctg ctggtgaatg
     3481 actaagtcaa cggcgtcgta gaggcgcgtg ccttcgcccg tgcgcgtgcg gcgtatggct
     3541 tcgcgcaggc gccgacggtc gctggtggcg tcggagagga cgcgcacgtc gtcgtcgaag
     3601 gagatgacga tgacgcggtc gtcgggccgt agctggtcga ggaaggctat ggcggcgtcc
     3661 tgtatgtctt cgagcctgaa gcgcgtggag ccggaggtgt cgaggaggag ggcgacggtg
     3721 aagggctgct cgacggtcgc gaagtacgcg acctcctgct cgacgccgtc ctcttgtatg
     3781 cggaagtcct gcttggtcag gcccggtatg aagcggccgt cgcggtcgag cacggagacg
     3841 gggatggtga cgagcgcggt gttgacgcgc acgacctcgt cctcgcccac ctcctcgccg
     3901 gcctcttcct gcggcgcgtg ctggcgcggg gcggcgggcg tcggccgggg cgcagggctg
     3961 ccggccgtcg cgggcgcgcc ctgcccgacg cggcgcgggc gcgtctgcgc gagcgtctcg
     4021 gcgagcgggg cgaagagggc gcagaggagc agcgctagcg tggccgactt tttcatggat
     4081 ttcccaaacc tctaaacttc cggcgggcga ggccgagcac cctttgatta tgccggccgg
     4141 gccggggatg ccagtttttt tcgtgaccta cctttcgagg gcgttgaaga cgagggggaa
     4201 agtcccccat gtctgggcgc ggtgctgggg gcggaagccg aagaggacga cgcggccgcg
     4261 gcccaagggg acttcggcga gcgcgatctt gcccgcgagc tggcggtcgc cgagcagcca
     4321 gcccgaacgc agcacgtcgc gcgcggcgta gcgcgcgacc gtgcggacgc gcgagggcgc
     4381 gtcgggcgtc gtcgtgacga aggccgagct gttgacgaag taggcgtcca cctcacgcgc
     4441 gaggccgcgc gcgagcgcgt ggcccgagtc cacttcgagc cggacgattg agccggggcc
     4501 gtagaactcc gacgagcgcg cgccttcgag ggcgttgcgc agcggcagcc ggaagccttt
     4561 gatcgccagc tcggaagcgg cgtcgaagca gacgagcgtg ccgccctcct cgacgaactt
     4621 tcgcaggtgc tcgacgccgc cttcggtgat gccgcccgcg aactcggccg gcgcgttttc
     4681 gcgcccctcg acgatctcgc gcaggcgcat cgacggcagc acgatcacgt cgtaccgcgc
     4741 gcgcaggttg ccggcgcgca ccccggcgtc gcgcagcgac tcgaagggga cgttgaaggt
     4801 gtcgaagacg tagcgcgtcc agccctcgtc c
//
LOCUS       DASPKR010000282         4794 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1202701, whole genome shotgun sequence.
ACCESSION   DASPKR010000282 DASPKR010000000
VERSION     DASPKR010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4794)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4794
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1202701"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(89..826)
                     /locus_tag="VD968_07845"
     CDS             complement(89..826)
                     /locus_tag="VD968_07845"
                     /inference="COORDINATES: protein motif:HMM:NF021371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2071 domain-containing protein"
                     /protein_id="HYE14335.1"
                     /translation="MSLTVKDRLAARERPDGSPVMYQSWGDLLFMHWEVPAEELRRLI
                     PGRLSVDTFDGRAYVGVTPFTLWGVRPAFTPPLPWVSEFHEINVRTYVHLGGVPGVWF
                     FSLDANSSIAVAGARALFRLPYFVAEISREHKGDTTVFMSSREGGAGPPAYFGATWVT
                     GEELPEAEPTTLAFFLTERYCLYTADGDMLYRARIHHRPWPLRRVRVETYRSSMVEAA
                     GVERPSGGPLFHHGGPVDVEVWPLAEV"
     gene            complement(1013..1864)
                     /locus_tag="VD968_07850"
     CDS             complement(1013..1864)
                     /locus_tag="VD968_07850"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYE14336.1"
                     /translation="MTGQGRPVIVLHGGPDFDHGYLLPDMDQFRDTFRLIYYDQRGRG
                     KSADNVRPDDVTLTSDLDDLDKVRRHFGLGAPVLLGHSWGAVLALEYALRHPTRVSHL
                     VLMNPAPASAGDVALLRKAYLEKLGPDMNRQREIVSGAGYREGDPEAVAARYRIHFKP
                     ALRRPADYERLMAAMKAAFTRQGKEGILKARAVEDRLMRDTWQVAGYDLLPKLRSLRV
                     PTLIIAGEDDFIPPAVAEHIARAIPGARLVMIKECGHFAYLECAGDVRNAFNDFFRPA
                     RGRRGGQ"
     gene            2278..2811
                     /locus_tag="VD968_07855"
     CDS             2278..2811
                     /locus_tag="VD968_07855"
                     /inference="COORDINATES: protein motif:HMM:NF021503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-binding protein"
                     /protein_id="HYE14337.1"
                     /translation="MPSGKTHDLITLFLAPPTLGAAWVLTGSWWLAAVLTAGMLFGGL
                     MFGPDLDIQSKQYTRWGVFRFLWLPYKVAFKHRSRWSHGIIFGTLIRVAYFAAVLALL
                     VWAGVYVRAVYVAGGEAPGWAELEHAWRVIEAGAAASGLGRGAVLAALAGLWWGAASH
                     TLTDVAWSILRKGSEIF"
     gene            complement(2878..4092)
                     /locus_tag="VD968_07860"
     CDS             complement(2878..4092)
                     /locus_tag="VD968_07860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14338.1"
                     /translation="MSTETNSQNPVVRAIVTGQAPPAARMAAARGLLPLAQEELIEIL
                     VSLRADADAAVAGAADETLAGQERGVLLSLAKGAATPPSVLGYLAEREDAGREIHEAV
                     ALNASTPDSSVAALARSTREGSVLEIISINQQRLIREPAVIDAIISNPARTPDAERRA
                     RETQREFFEKERGVRQIAEEMRARGMGAAAEFVESAESIGIDEDGGLTLDDAWLIAEH
                     IEVSDSEIDDSWLPSERLEELIEETFEQRTAAAERVISETHAEAGEVAPERVALIRRI
                     MLMKVKDRIKLGLKGDREARNILIRDSNRVVAHAVIQNPRITDQEVEAIAAMRTVSDD
                     VLRAIALNRAWARQYPIIHNLARNPRTPFATSVNILPRLQPKDLKNLAQNRNVPEAVR
                     RQALRITSMRGH"
     gene            complement(4114..>4794)
                     /locus_tag="VD968_07865"
     CDS             complement(4114..>4794)
                     /locus_tag="VD968_07865"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HYE14339.1"
                     /translation="AIATLGFGEIIYTVIRSTENIGPLEIGQAAGLHGIPKVTTFFWA
                     ATAMVVTVVCVWRLAYSSKGKAFAAIREDEVAAAAMGINTTFYKSAAFVIGAFFAGVA
                     GALFGTLRVYGRERRPAASPSSAAGDVGDAGEGEAATTKARMSKNPEPEYSKEAREDC
                     ISGLVRLRAVLASDGTVKHILPVKRLGYGLTQRAIEAARGIKFTPARKGGRPVSQFVL
                     LEYNFACY"
BASE COUNT          722 a         1525 c         1681 g          866 t
ORIGIN      
        1 cggtgtcgag cacgccttca tcttttttct tagccatcac aatacctccg gacattcggt
       61 gcttacgggc tctcacttac gcggcacttc agacctccgc gagcggccat acctctacgt
      121 ccaccggccc gccgtggtgg aagagcggcc cgcccgatgg cctttctacc ccggcggcct
      181 cgaccatgct cgaccggtaa gtctcgacgc gcaccctacg caggggccag gggcggtggt
      241 ggatgcgcgc gcggtagagc atgtcaccgt ccgccgtgta gaggcagtag cgctccgtca
      301 ggaagaacgc cagcgtggtg ggctcggcct ccggcagttc ttcccccgtc acccacgtcg
      361 ccccgaagta tgccggcggg cccgccccgc cctcgcgcga cgacatgaag acggtcgtgt
      421 cgcccttgtg ctcgcggctg atctcggcaa cgaagtaggg caggcggaag agggcgcgtg
      481 cgcccgccac ggctatcgag ctgttcgcgt cgagcgagaa gaaccacacg ccggggacgc
      541 cgcctaggtg gacgtaggtg cggacgttga tctcgtggaa ctcgctcacc caaggcagcg
      601 ggggcgtgaa ggcgggtcgg acgccccaga gcgtgaaggg ggtgacgccg acgtaggccc
      661 tgccgtcgaa ggtgtccacg gaaagccttc cgggtatcaa ccgacggagt tcctcggcgg
      721 gtacctccca gtgcatgaag agcaggtcgc cccaggactg gtacatgacg ggcgagccgt
      781 cggggcgctc gcgcgcggcc agccggtctt taacggtcag cgacatacat gccttctcgg
      841 gaagtgtgta gggtatgcgc gggaagggct gggtgtcaac gcgtaaccgg cgcgttcttc
      901 tattggggcg ggcgcatgcc gttgttaggc cgcggcgcgc gccgtggcaa gagcctcgcg
      961 cgctgaagtg ttagaggatg gcagacgcgg gccgagcccc tcggacgcgc aactactgtc
     1021 cccctcgcct gcccctagcg ggccgaaaga agtcattgaa cgcgttgcgg acatcgccgg
     1081 cgcattccag gtaggcgaaa tgcccgcact ccttaatcat gaccagccgg gcgcccggga
     1141 tggcccgcgc gatatgctcg gcaaccgcgg gcgggatgaa gtcgtcttcg ccggctatga
     1201 ttaaggttgg gacacgcaga ctgcggagct tagggagcag atcatagccg gccacctgcc
     1261 atgtgtcgcg catgagccgg tcttcgaccg ctcgcgcctt gaggatgccc tctttcccct
     1321 gcctggtgaa agcagccttc atcgccgcca tcagccgctc gtagtccgcg ggccgcctca
     1381 gcgccggttt gaagtgaatt cgatagcgcg cggcaacagc ctccgggtcg ccctctcggt
     1441 agccggcgcc ggacacaatc tctcgctgcc ggttcatgtc cgggccgagt ttctccaagt
     1501 acgccttccg cagcagcgcg acgtctccgg cagaggccgg cgcggggttc atcaggacga
     1561 ggtgggacac gcgcgtcggg tggcggagtg cgtactccag cgccagcacc gcgccccagg
     1621 agtggccgag caacaccggc gcgcccaacc cgaagtgccg tcgcaccttg tcgaggtcat
     1681 ctaggtcgga cgtgagcgtc acgtcatccg gacggacgtt gtcggcggac tttcctcggc
     1741 cacgctggtc gtagtagatg aggcggaatg tatcccggaa ctgatccatg tcgggcaaga
     1801 gatagccgtg gtcgaagtcg gggccgccgt ggaggacgat gacgggccgg ccctgcccgg
     1861 tcacacgggc atagagtgag gcgccgcccg ccgggattcg ggtatcaagc ggggtcccgc
     1921 tgcgtttggc ttgtagtccc cctgctaaat tcggaggcgc cgcaatcgcc aaggccgcta
     1981 caacgctcca ggcaaccaca tgtagcctca ccggcctacc ctccactgtt gcaacgagat
     2041 tcttcggcgg cataacgccg gaattggccc gccctgcgct agcagcacat aacattatgg
     2101 gacaattaaa tgatgaaggg aatgctatcg aagcgtcggg ctgaatgtgc cgttaggccc
     2161 gatgggcctg caaccatgat ccttgctgta atctctttag tgccgactgt ggaaactgtt
     2221 atgttttctt tggtatagcc ctctataata aaacttccgg gctcggccta attgactatg
     2281 ccttcgggga agactcacga cctgattacg ctctttctcg cgccgcctac gctcggggcg
     2341 gcgtgggtgc tcacggggag ctggtggctg gcggcggtgt tgacggcggg gatgctgttc
     2401 ggcggcctga tgttcggccc cgacctggat attcagtcga agcagtacac gcgctgggga
     2461 gtgttccgct tcctctggct gccgtacaag gtcgcgttca agcaccgctc gcgctggtcg
     2521 cacgggataa tcttcgggac gctgataagg gtcgcgtact tcgcggcggt gctggcgctg
     2581 ctcgtgtggg cgggcgtgta tgtgcgcgcg gtctatgtgg cgggcggaga ggcgccgggg
     2641 tgggcggagc ttgagcacgc ttggcgcgtc atagaggctg gggcggccgc gtcgggcttg
     2701 gggcgcggcg cggtgctggc ggcgctcgcg ggcctctggt ggggcgcggc cagccatacg
     2761 ctcaccgacg tggcgtggtc aatcctgcgc aagggctcgg aaatctttta agaatcggcg
     2821 gccggcggga ggggggcggc ggaaagtaaa gcttccgccg ccccctcttt ttttagccta
     2881 atggccgcgc atggaggtta tgcgcaacgc ctgtcggcgg actgcctcgg ggacgttgcg
     2941 gttctgcgcg aggttcttga ggtctttggg ctggaggcgc gggagtatgt tgacggaggt
     3001 cgcgaacggt gtgcgcgggt tgcgcgcgag gttgtggatt atggggtact ggcgcgccca
     3061 cgcgcggttg agcgcgatgg cgcgcagcac gtcgtctgag accgtccgca tggcggcgat
     3121 ggcctcgacc tcctggtcgg tgatgcgcgg gttctgtatg acggcatgcg cgacgaccct
     3181 gttcgagtcg cgtatgagga tgttgcgcgc ctcgcggtcg cccttgaggc cgagcttgat
     3241 gcggtctttg accttcatca gcattatgcg gcgtatgagg gcgacgcgct cgggcgcgac
     3301 ctcgccggcc tccgcgtgcg tctcgctgat gacccgctcg gcggcggccg tgcgctgctc
     3361 gaaggtctcc tcgatcagct cttcgagcct ctcagaaggg agccacgagt cgtcaatctc
     3421 ggagtcggag acttcgatgt gctcggcgat gagccacgcg tcgtcgaggg tgaggccgcc
     3481 gtcctcgtct atgccgattg actcggccga ctcgacgaac tcggccgccg cgcccatgcc
     3541 gcgcgcgcgc atctcctcgg ctatctggcg gacgccgcgc tccttctcga agaactcgcg
     3601 ctgcgtctcg cgtgcgcgcc gctcggcgtc gggcgtgcgc gctgggttcg agatgatggc
     3661 gtctatgacg gcgggctcgc gtatgaggcg ctgctggttt atcgagatga tctcgagcac
     3721 ggagccctcg cgcgtcgagc gcgcgagcgc ggccaccgag gagtcgggcg tcgaggcgtt
     3781 cagggcgacg gcctcgtgta tctcgcgccc ggcgtcctcg cgctcggcga ggtagccgag
     3841 cacgctcggg ggcgtcgccg cgcctttggc gagcgagagc agcacgcccc tctcctggcc
     3901 cgcgagcgtc tcgtcggcgg cgcccgcgac ggccgcgtcc gcgtcggccc ggagcgatac
     3961 gagaatctcg atcaactcct cctgcgcgag cgggagcagt ccccgcgccg ctgccatcct
     4021 cgcggccggc ggcgcttggc cggtgacgat tgcccggacg accgggttct gtgaattagt
     4081 ctctgtgctc atcgctcgcg agggctgccg gcttcagtag caggcgaaat tgtactccag
     4141 aagtacgaac tgcgagacgg ggcggccgcc cttccgggcc ggcgtgaact ttatcccgcg
     4201 cgcggcctcg atggcgcgct gcgtcagccc gtagccgagc cgcttgacgg ggagtatgtg
     4261 cttgaccgtc ccgtcggagg cgagcacggc gcgcaggcgc acgaggccgc ttatgcagtc
     4321 ctcgcgcgcc tccttgctgt actcgggctc ggggttttta gacatccgtg ccttcgtcgt
     4381 ggcggcctcg ccctcgcccg cgtcgcccac gtcgcccgcc gcggacgagg gcgaggccgc
     4441 agggcgcctc tcccgcccgt aaacgcggag cgtgccgaac agcgcgccgg ccacgccggc
     4501 gaagaacgcg ccgatcacga acgcggcgga cttatagaac gtggtgttga tgcccatcgc
     4561 ggcggcggcg acctcgtcct cgcggatggc ggcgaacgcc ttgcccttcg acgagtacgc
     4621 gagccgccag acgcacacga cggtgacgac catggccgtc gccgcccaga agaacgtggt
     4681 gaccttgggg atgccgtgga ggccggccgc ctggccgatc tcgagcgggc cgatgttctc
     4741 ggtgctgcgg atgacggtgt agatgatctc gccgaacccg agcgtggcga tcgc
//
LOCUS       DASPKR010000283         2785 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1718096, whole genome shotgun sequence.
ACCESSION   DASPKR010000283 DASPKR010000000
VERSION     DASPKR010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2785)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2785
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1718096"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1003
                     /locus_tag="VD968_07870"
     CDS             <1..1003
                     /locus_tag="VD968_07870"
                     /inference="COORDINATES: protein motif:HMM:NF022623.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 172 protein"
                     /protein_id="HYE14340.1"
                     /translation="NAGRKGSPTVPIRAGESRVLAEVSGSSGTVRRIWMTIPDRSPRM
                     LRSLRIDMYWDGAKTPAVSAPLGDFFGLGLGQMVPFQSALFANPEGRSFNCFVPMPFK
                     TGMKIVMTNESPTNLDELFYDVNYTLGDRHGPRTLYFHAHYRRESPTRLQQDYELLPR
                     VEGRGRYLGTNVGVAVNTKEYFNTWWGEGEIKIYLDGDREFPTLVGTGTEDYVGTAWG
                     QGQYAHLYQGSPVADEQNMRWCFYRYHIPDPVFFQREVRVTMQQIGYLAPHSREPIVK
                     NNRRLYRAGPGLVEMDTSKDGKFERSDDWSSCTYFYLDKPENNLPPLAPVAQRVEGL"
     gene            1082..1204
                     /locus_tag="VD968_07875"
     CDS             1082..1204
                     /locus_tag="VD968_07875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14341.1"
                     /translation="MQGPLRGIIAGIAAWKLGGGCISTILIFIIVFWALGYVNC"
     gene            complement(1283..>2785)
                     /gene="glgP"
                     /locus_tag="VD968_07880"
     CDS             complement(1283..>2785)
                     /gene="glgP"
                     /locus_tag="VD968_07880"
                     /inference="COORDINATES: protein motif:HMM:TIGR02094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HYE14342.1"
                     /translation="NDEIDRYITGHLYGGDRETRCVQEMVLGVGGVRLLRELGVEPRV
                     FHLNEGHSAFLTLELARELTAEGRSFDEAKEAVRSRCVFTTHTPIAAGHDEFTPALIE
                     SCFGEGYWRSLGLSRREFLALGRVDGDDDAELFGLTPLALRMCRSSNGVSAKHGEVTR
                     ELWNKMWPEQRVENVPVTSVTNGVHAPTWVSPLLCSLFTERVGSDWAQVLHDPAAWSK
                     AIEAVSDEELWKVKRLMKRRLIAFVRERLYHVRRQHQHEQPDYAEAALGMFDPEALTI
                     GFARRVAAYKRWGLLLTEPERLHRLILDPERPVQLVFAGKAHPQDQGAKLILQQLAQW
                     KLDPRVMQRAVFLQDYDQEIARQLVQSVDVWLNVPRRPLEASGTSGEKVAMNGGLNLS
                     VLDGWWLEGYDGRNGWAVGDVAIAESVEEMDRRDAESLYRVLESEVVPIFYERDEDGM
                     PRRWLAMMRHAIQTLAPAFNSDRMVREYTQRIYTADPFADRKPRSDGFAG"
BASE COUNT          471 a          953 c          910 g          451 t
ORIGIN      
        1 gaacgcgggc cgcaagggct cgcccactgt ccccatcagg gcgggcgaga gccgcgtgct
       61 cgccgaagtc tcgggctcca gcggcacggt gcgaagaatc tggatgacca tccccgaccg
      121 cagcccccgc atgctccgaa gtctccggat tgacatgtac tgggacgggg cgaagacgcc
      181 ggccgtgagc gcgcctctgg gcgacttctt cggcctcggg ctcgggcaga tggtgccgtt
      241 ccagtcggcg ctcttcgcga acccggaggg gcgcagcttc aactgcttcg tgccgatgcc
      301 cttcaagacc ggcatgaaga ttgtgatgac gaacgagagc ccgacgaacc tcgacgagct
      361 tttctacgac gtgaactaca ccctcggcga ccgccacggc ccgcgcacgc tctacttcca
      421 cgcccactac cgccgagaga gcccgacgcg cttgcagcag gactacgaac tgctgccgcg
      481 cgtagagggg cgcggccgct acctcggcac gaacgtcggc gtcgccgtca acacgaagga
      541 gtatttcaac acatggtggg gcgagggcga gattaaaatc tacctcgacg gcgaccgcga
      601 gttccccacc ctcgtcggca cggggacgga ggactacgtc ggcaccgcct gggggcaggg
      661 gcagtacgcg catctttatc agggctcgcc cgtagccgac gagcagaata tgcgatggtg
      721 cttctaccgc taccacatac ccgaccccgt cttcttccag cgcgaagtgc gcgtcaccat
      781 gcagcagatt ggatacctcg ccccgcacag ccgcgagccc attgtgaaga acaaccgccg
      841 cctctaccgc gcggggccgg ggctcgtgga gatggacacg tcgaaggacg gcaagttcga
      901 gcgctcggac gactggtcta gctgcacgta cttctacctg gacaaaccgg agaacaacct
      961 gccgccgctc gccccggtcg cgcagcgcgt cgaggggctt tgaggttgac tgcggacgcg
     1021 cctatgccgt aaaagtctga tgattccccc gccagaaaaa cccgactaag aggagagact
     1081 tatgcaaggg cctttgcgtg gaatcatcgc ggggatagcg gcctggaagc tcggcggggg
     1141 ctgcatctcg acgatactga tcttcatcat cgtcttctgg gcgctcggct acgtgaactg
     1201 ctgaggcgcc gcaatgcaaa aaagggaggc ggccggggcg aaaacgtttt cgccccggcc
     1261 gcctcccttt tcgttcgggc cttcagcccg cgaagccgtc gctgcggggc ttcctgtcgg
     1321 cgaaggggtc ggcggtgtag atgcgctgcg tgtactcgcg aaccatgcgg tcgctgttaa
     1381 aggcgggcgc gagcgtctgt atggcgtggc gcatcatggc gagccagcgg cgcggcatgc
     1441 cgtcttcgtc gcgctcgtag aagattggca ccacctccga ctccaacacg cggtagagcg
     1501 actcggcgtc gcgcctgtcc atctcctcca cactctccgc gattgccacg tcgcccacgg
     1561 cccagccgtt gcggccgtcg tagccttcga gccaccagcc gtccagcacc gagaggttga
     1621 gcccgccgtt catcgcgacc ttctcgccgc tcgtgcccga cgcctccagc ggccggcgcg
     1681 ggacgttcag ccaaacgtca accgactgca cgagctggcg cgctatctcc tggtcgtagt
     1741 cctgcaaaaa gaccgcgcgc tgcatcacgc gcgggtcgag cttccactgg gcgagctgct
     1801 ggagtatgag cttcgcgccc tgatcctgcg ggtgcgcctt gccggcgaag acgagctgca
     1861 cgggccgctc ggggtcgagt atgagccggt gcaggcgctc gggctccgtc agcaacagcc
     1921 cccagcgctt gtaggccgcg acgcggcgcg cgaagccgat ggtcagggcc tcggggtcga
     1981 acatgccgag cgcggcctcg gcgtagtccg gctgctcgtg ctggtgctgt cggcgcacgt
     2041 ggtagagccg ctcgcgcacg aaggctatca gccgccgctt catcagccgc ttgaccttcc
     2101 aaagctcctc gtccgagacg gcctctatcg ccttcgacca cgcggcgggg tcgtgcaaga
     2161 cctgcgccca gtcgctcccg acgcgctccg tgaagagcga gcacagcagc ggggagaccc
     2221 aggtcggcgc gtgcacgccg ttcgtgaccg aagtgaccgg cacgttctcg acgcgctgct
     2281 ccggccacat cttgttccat agctcgcgcg taacctcgcc gtgctttgcg ctcacgccgt
     2341 tcgaggagcg gcacatgcgg agcgccagcg gcgtcaggcc gaacagctcc gcgtcgtcgt
     2401 cgccgtccac gcggccgagc gcgaggaact cgcggcgcga gaggccgagc gagcgccaat
     2461 agccctcgcc gaagcaggac tcgatgaggg cgggcgtgaa ctcgtcgtgg ccggccgcga
     2521 tgggcgtgtg cgtcgtgaac acgcagcgcg agcgcacggc ctccttcgcc tcgtcgaagc
     2581 tccggccctc ggccgtgagc tcccgcgcaa gctccagagt gaggaaggcc gagtggcctt
     2641 cgttcaggtg gaacacgcgg ggctccacac ccagctcgcg caggagccgc acgccgccga
     2701 cgcccaagac catctcctgt acgcagcgcg tctcgcggtc gccaccgtag aggtggcccg
     2761 tgatgtatcg gtctatctcg tcgtt
//
LOCUS       DASPKR010000284         2339 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_168106, whole genome shotgun sequence.
ACCESSION   DASPKR010000284 DASPKR010000000
VERSION     DASPKR010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2339)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2339
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168106"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2248
                     /locus_tag="VD968_07885"
     CDS             <1..2248
                     /locus_tag="VD968_07885"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14343.1"
                     /translation="RREIEQTRAFAEQQARTNRKLRLMTAAMALLLVLALGAAGYAVA
                     KRNEAHANEAEAVRLAGLARLSEQEALKRRDELADALKARDAADEAKEAAQAAEARAQ
                     MAKDEALSRAIKNEARAKKEAERANEQAELAAKNLRQANEAAEAEKIARVKLQSSLER
                     NRWSRDGLAAYQRGDYDSALGAFMIVRDSTAAEGGDRGGQVEDVETARVHGWAHAYVG
                     ATLRQLRQPAQAVESYERALPILEEVLDPDDPVRFDTYHGMAHAYREAYKTDAAEEFY
                     NRALKFLEERTPTAPTAGGMSGPVAAKMAATLENVARLYRDLGRYDDAEPVYKRIVKL
                     REPSGGPEFVASLKEMAQFYLGQNKYREAEALFPKMLDTQERRFIGGEGGEGDGISNF
                     RELGDSYSELGEVYVGLGEESKAQEAFQLARAVQDYWIKARQVLRQSGGVADAGLMRA
                     KFKEVGGEKNLAEMARLLVRLGRYKAAEGIYLELIRFYDNENEDAESAAANVALGNLY
                     RDHLNDPEKAEEHYKVAEEAASRQGDVRPTLRRASAVLAEALRQRAALYASRPEKFSE
                     ALSLYERAHKIYEQRDSWLGENAALYGIIQMVEKQKRPVEERTLAYRRRFDALGKYVR
                     KFGCEGCERPNDFFGIVFEYARAANDAAYVYGLARKQDDAEAVFRSVFEAWGTIKLST
                     FSPKALDAYARTLDSYQALLTRRGKPAEAAKVAELAKSVREKQSQFQQASEQQQLQQK
                     YAQQQAAP"
BASE COUNT          461 a          776 c          819 g          283 t
ORIGIN      
        1 gcggcgcgag atagagcaga cgcgcgcctt cgccgagcag caggcgcgca cgaaccgcaa
       61 gctgcggctg atgactgcgg cgatggcgct cctgctcgtg ctcgcgctcg gcgcggccgg
      121 ctacgccgta gccaagcgca acgaggcgca cgccaacgag gccgaggccg tcaggctcgc
      181 ggggctagcc cgcctgagcg agcaggaggc cctcaaacgg cgggatgagt tggccgacgc
      241 gctcaaggcg cgggacgccg ccgacgaggc gaaggaggcc gcgcaggccg ccgaggcccg
      301 tgcccagatg gctaaggacg aggctttgag tcgggccatc aagaacgagg cccgcgcgaa
      361 aaaggaggcc gagcgcgcga acgagcaggc cgagctcgcg gccaaaaacc ttcgccaagc
      421 gaacgaggcc gccgaagccg agaagattgc gcgcgtcaag ctacagtcat cgctcgagcg
      481 caaccgctgg agccgcgacg ggctcgcggc ctaccagcgc ggcgattacg actcggcgct
      541 cggcgccttc atgatcgtgc gcgactcgac cgcagccgag ggcggagacc gcggcgggca
      601 ggtggaggac gtggagacgg cgcgcgtgca cggctgggcg cacgcctacg taggcgcgac
      661 gcttcgccag ttgaggcagc ccgcccaagc cgtcgagtcc tacgagcgcg cgctccccat
      721 actcgaagag gtgctcgacc cggacgaccc cgtccgcttc gacacctacc acgggatggc
      781 gcacgcctac cgcgaagcct acaagacgga cgcggccgag gagttctaca accgcgcgct
      841 caagttcctc gaggagagaa ccccgacagc gcccacggcc ggcggcatgt ccggccccgt
      901 ggccgcgaag atggcggcca cgctcgagaa cgtcgcgcgc ctctaccgcg acctcggccg
      961 ctacgacgac gccgagcccg tctataagcg gatcgtcaaa ctgcgcgagc catcgggcgg
     1021 ccccgagttc gtagcgtcgc tcaaggagat ggcgcagttc tacctcggtc agaacaagta
     1081 cagggaggcc gaggccctct tccccaagat gctcgacacg caggagaggc ggttcatcgg
     1141 cggcgagggc ggcgaaggcg acggcatctc taatttccgc gagctgggcg acagctacag
     1201 cgagttgggc gaggtttacg tgggcctggg cgaggagtcg aaggcgcagg aagccttcca
     1261 gctcgcgcgc gccgtgcagg actactggat taaggcccgc caggtcttga ggcagtccgg
     1321 gggcgtcgcc gacgccgggc tgatgcgcgc gaagttcaag gaggtgggcg gcgaaaagaa
     1381 cctcgccgag atggcccggc tcctggtcag gctcggccgc tacaaggccg ccgagggcat
     1441 ctatctggag ctaatacgct tttacgacaa cgagaacgag gatgccgagt ccgcggccgc
     1501 caacgtcgcg ctcggcaacc tctaccgcga ccacctgaat gaccccgaga aggccgagga
     1561 gcattacaag gtggccgagg aggcggcgag caggcagggc gacgtcaggc ccaccctccg
     1621 gcgcgcgtcg gccgtgctgg ccgaggcact ccgccagcgc gccgccctct acgcctcgcg
     1681 ccccgagaag ttctccgagg cgttaagtct ctacgagcgg gcgcacaaaa tctacgagca
     1741 gagggacagt tggctcggcg agaacgcagc gctctacggc atcatccaga tggtcgagaa
     1801 gcagaagagg ccggtcgagg agaggacact cgcctaccgc cgcaggttcg acgccctcgg
     1861 caagtacgtc cgcaagttcg ggtgcgaagg ctgcgaacgg ccgaacgact tcttcggcat
     1921 cgtgttcgag tacgcgaggg ccgccaacga cgccgcgtac gtttacgggc tagccaggaa
     1981 gcaggacgat gccgaggccg tcttccgaag cgtgttcgag gcgtggggca caatcaagct
     2041 gagcactttc agcccgaagg ccctcgacgc ctacgccaga acgctcgaca gctaccaggc
     2101 gctgctcacg cgccgcggca agcccgccga ggcggcgaag gtggccgagc ttgcgaagtc
     2161 cgtgcgcgag aagcagagcc agttccagca ggcgagtgag cagcagcaac tgcaacagaa
     2221 gtacgcgcag cagcaggccg ccccgtaaca gagccgcggg cggaagcctc gcgggtgaga
     2281 ggttcatgac agccattccg tcatgaaccc ggcgcccgcg aggcttccgc ctgccgacc
//
LOCUS       DASPKR010000285         2892 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_683376, whole genome shotgun sequence.
ACCESSION   DASPKR010000285 DASPKR010000000
VERSION     DASPKR010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2892)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_683376"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..482
                     /locus_tag="VD968_07890"
     CDS             <1..482
                     /locus_tag="VD968_07890"
                     /inference="COORDINATES: protein motif:HMM:NF027875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYE14344.1"
                     /translation="VVCSVVAQMLEANPRLSPAAVKHILVSTADRVAGAPLARQGYGV
                     VNARRAVAEARREQHTLDPATYGPPRVCAEGVLFSFHDDAAREVGLAGDFNGWDASRA
                     RLVKGEGGVWRATVAGLTPGRYHYKFVVDGAGWVDDSANGLKEPDEFGGFNSLLNII"
     gene            643..1548
                     /locus_tag="VD968_07895"
     CDS             643..1548
                     /locus_tag="VD968_07895"
                     /inference="COORDINATES: protein motif:HMM:NF012455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HYE14345.1"
                     /translation="MLKALRTHWPEYLIEAAGLGFFMASACAFGVLLFHPSSPVVAAL
                     PGATPRRVLMGAAMGATAVAIIYSPWGKRSGAHINPATTLAFYRLGKVKGWDVLFYIA
                     AQFAGGVAGTLIAVALLGEAVRVPEVNYVVTQGEYGAGVAFAAEVVITFVLMTVVLNA
                     SNSPRLTRWTGLFAGALVMTYISVEAPLSGMSMNPARTFGSALAARLWTALWVYFTAP
                     LVGMLLAAELYRRTRGPERVYCAKYHHRNTQRCIFNCGFDRIDVRGEKAGAEDRRPTG
                     GGVRPVEITRSAAFDTAKLLLAAGL"
     gene            1566..>2892
                     /locus_tag="VD968_07900"
     CDS             1566..>2892
                     /locus_tag="VD968_07900"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HYE14346.1"
                     /translation="MSQANHYDVIIIGTGAGGGTLAHRLAPSGKRILLLERGGFVPRE
                     RDNWDSRAVNVEAKYNTKEVWYDRSGEKLHPHTNYYVGGNTKFYGAALFRMRERDFGE
                     VRHRDGISPAWPISYADLEPYYAQAEAMYHVHGNRGEDPTEGWASGPYPHPAVSHEPR
                     IRQLAEDFARLGCKPFHVPLGVMLRENDPRSRCIRCGTCDGFPCLVQAKSDAHVCAVE
                     PALEHPNVTLLTGAKVTRLDTDASGCAVKAVHVERDGGEMEIFSADIVAVSCGAINSA
                     ALLLRSASDKHPRGLANSSDTVGRHYMGHVNSVMLAVSKCPNPTVFQKTLAVNDFYFG
                     SDDYDYPMGHISFVGKLDGVALSAGAPKIAPGFTLDMMARHSLDFWLTSEDLPDPNNR
                     VTLDREGNIVLSYTPNNLEPHERLQAKLKSLMNQQTRCREHGHSCHVGLF"
BASE COUNT          482 a         1008 c          946 g          456 t
ORIGIN      
        1 cggtcgtctg ctcggtcgtc gcgcagatgc ttgaggccaa cccgcgactt tcacctgccg
       61 ccgtcaagca catccttgtc tcgacggctg accgcgtggc cggcgctccg ctcgcgcgcc
      121 agggctacgg cgtcgtgaac gcgcggcgcg cggtcgccga ggcccggcgc gagcagcaca
      181 cgctcgaccc tgcgacctac ggcccgccgc gagtctgcgc ggaaggcgtt ctcttctcct
      241 tccacgacga cgcggcgcgc gaggtcgggt tggcggggga tttcaacggc tgggatgctt
      301 cacgcgcgcg gctcgtaaaa ggcgaaggcg gcgtctggcg ggctaccgtc gccggcctga
      361 cgccgggccg ttaccactac aagttcgtcg ttgacggggc gggctgggtg gacgactcgg
      421 ccaacgggct gaaggagccg gacgagttcg gcggcttcaa ctcgctgctg aacatcattt
      481 gatcgtgcgc gggaaagggt gaagggctcc gtaaatttcc tcgtaagttt ttgactaccg
      541 ccacgactaa caggcaggag aagaggccgg gccgcacgcg gcgcacggcg ggaataaaac
      601 ttccgcacgg gtgattcaaa cagccggaga cgttcgaggt caatgctgaa agcactccgc
      661 acacactggc cggaatacct gatcgaggcc gccgggctcg gcttcttcat ggcgtcggcc
      721 tgcgccttcg gcgtcctgct cttccacccc tcgtcgccgg tcgtcgcggc gctacccggc
      781 gcgacgccgc ggcgcgtgct gatgggcgcg gcgatgggcg cgaccgcggt ggcgatcatc
      841 tactcgcctt ggggtaagcg ctccggcgcg cacatcaacc cggcgacgac gctcgccttc
      901 tacaggctcg gcaaggtcaa gggatgggac gtactcttct acatcgccgc gcagttcgcg
      961 ggcggcgtcg ccgggacttt gatagcggtc gcgctcttag gcgaggctgt ccgagtgcct
     1021 gaggtcaact acgtcgtgac gcagggcgag tacggcgcgg gcgtcgcctt cgcggccgaa
     1081 gtcgtcatca cgttcgtcct gatgacggtc gtgctgaacg cctcgaacag cccgcgcctg
     1141 acgcgctgga cggggctgtt cgccggcgcg ctcgtgatga cgtacatcag cgtcgaggcc
     1201 ccgctctcgg ggatgagcat gaaccccgcg cgcaccttcg ggtcggccct cgccgcgcgg
     1261 ctctggacgg cgctctgggt ttacttcacc gcgcccctcg tcggcatgct cctcgccgcc
     1321 gaactctaca ggcgcacgcg cggccccgag cgcgtctatt gcgccaagta ccaccaccgc
     1381 aacacgcagc gctgcatctt caactgcggg ttcgacagga tagacgttcg aggtgaaaag
     1441 gcgggggccg aagaccggag gccaacgggc ggcggagttc ggccggtcga gatcacccga
     1501 agcgcggcgt tcgacacggc gaagctttta ctggccgccg gcctctgagc cccgaaggag
     1561 ttctcatgtc acaggcgaac cactacgacg tgatcatcat cggcaccggc gcgggcggcg
     1621 gcacgctcgc gcaccggcta gcgccctcgg gcaagcggat tctgcttttg gagcgcggcg
     1681 ggttcgtccc gcgagagcgc gacaactggg actcgcgcgc cgtcaacgtc gaggcgaagt
     1741 acaacacgaa agaagtctgg tacgaccgca gcggcgagaa gctccacccg cacacgaact
     1801 actacgtcgg cggcaacacc aagttctacg gcgcggccct cttccgcatg cgcgagcggg
     1861 atttcggcga ggtcaggcac cgcgacggca tctcgcccgc gtggcccatc tcctacgccg
     1921 acctcgagcc ctactacgcg caggccgagg cgatgtatca cgtccacggc aaccgcggcg
     1981 aagacccgac cgaaggctgg gcgtcggggc cgtacccgca cccggccgtc tcgcacgagc
     2041 cgcgcatccg gcagctcgcc gaagacttcg cgcgattggg gtgcaagccc ttccacgtcc
     2101 cgctcggcgt catgctcagg gagaacgacc cgcgaagccg ctgcatccgc tgcgggacgt
     2161 gcgacggctt cccgtgcctc gtgcaggcca agtcggacgc gcacgtctgc gccgtcgagc
     2221 ccgcgctcga gcacccgaac gtcacgctcc tgaccggcgc gaaggtcacg cggctcgaca
     2281 cggacgcctc gggctgcgcc gtcaaggcgg tgcacgtcga gagggacggt ggcgaaatgg
     2341 aaatcttctc ggccgacatc gtcgccgtct cgtgcggcgc gattaactcc gcggcgctgc
     2401 tgctgcgctc ggcgagcgac aagcacccgc gcgggctcgc taattcctct gacacggtgg
     2461 gccgccacta catggggcac gtcaactccg tcatgctcgc cgtctcgaag tgcccgaacc
     2521 cgacagtctt ccagaagacg ctcgccgtca acgacttcta cttcggctcg gacgactacg
     2581 actacccgat gggccacatc tccttcgtcg gcaagctcga cggcgtggcg ctctcggcgg
     2641 gcgcgcccaa gattgcgccc ggcttcacgc tcgacatgat ggcccgccac tctctggact
     2701 tctggctcac gtccgaagac ctgcccgacc cgaacaaccg cgtcacgctc gaccgcgagg
     2761 gcaacatcgt cctctcttac acgccgaaca acctcgagcc gcacgagcgc ctacaggcga
     2821 agctaaaaag cctgatgaac cagcagacca ggtgccggga gcacggccac tcgtgccacg
     2881 tcggcctgtt tg
//
LOCUS       DASPKR010000286         3243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_168233, whole genome shotgun sequence.
ACCESSION   DASPKR010000286 DASPKR010000000
VERSION     DASPKR010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3243)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3243
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168233"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1575
                     /locus_tag="VD968_07905"
     CDS             <1..1575
                     /locus_tag="VD968_07905"
                     /inference="COORDINATES: protein motif:HMM:NF017142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HYE14347.1"
                     /translation="WRVASAGSDEVRLSYKVFADDLSGTFSQLDERHANFNGGSVFMY
                     VAGHKQDDVTLKILAPRGWAVVCGASTTFDQTEFNFPDYDTLIDTPTEVAPGLDLTFF
                     RVGDKSYTVAVHALGERGDRMDDFVGRLERIVRAQIATMGEPDFSGYVFLFHFDPEAR
                     RGDGMEHLNSTQIIETGPMADRAFFDAAVSTASHEFFHVWNVKRLRPRGLGPWDYTRP
                     VVTRGLWIAEGFTNYYGKLFERRAGLLDDQELFDSYAGAITEVENAPGNRLTSAVETS
                     LLAPFIDRAVHEQRTNLQNTVVSYYPKGETLAVVIDLLIRARSAGRASLDDVMRRAYE
                     EFYVKAERDSYYLRGRAYELEEFERLASQVAGFDLTDFFRRHAHGVEPPPYKEAFAGV
                     GLRLVRVPGRFNLSALGITPDDPKETKRLRVGSVQKGSPAERAGLKAGDTITRAGGEA
                     LAEGATWESAFGKYKAGESVLVTAEGASGESRPLTLTLTIGASSRTEFRIEKDDAATP
                     AARALREAWLTGKDRR"
     gene            1653..1907
                     /locus_tag="VD968_07910"
     CDS             1653..1907
                     /locus_tag="VD968_07910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14348.1"
                     /translation="MGGTIRNLFLASVLLALCATGSIYFGQQHAASAAATAQQQANPL
                     AQQFFAEPGDGWVLAGGFLVLVALAFAFAGGMLWLQERKG"
     gene            complement(1963..2868)
                     /locus_tag="VD968_07915"
     CDS             complement(1963..2868)
                     /locus_tag="VD968_07915"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HYE14349.1"
                     /translation="MSEKRRAVLILNPGAGRGGEAAREREVGAFRERLERGGVSLSVE
                     RTRGPNDAGRLAGLAVRAGVRDVVVRGGDGTVHEAIQELAGSGARLLAWPAGTANVLA
                     RQLKIPAGAAAAAEVFLRGRSRRITLGLATSVRTGERRYFFMMAGVGLDASVVRHVRP
                     RLKRRVGEAAFWYAGLGHLAHWRPRVFTVEVGGERLPATYAAIGKAPWYGGGLAITPR
                     ARLDADTFEVCVINSRSRLRYLYLLGRAMRGGAPEHGAAGVCFRRAARVRATGDAQVQ
                     ADGELIGELPMTFEMAPEGIEVIIP"
     gene            complement(3063..>3243)
                     /locus_tag="VD968_07920"
     CDS             complement(3063..>3243)
                     /locus_tag="VD968_07920"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HYE14350.1"
                     /translation="DMVTQLVGGLRAGMGYTGCRNIREFQEKTRFVRISPAGLKESHV
                     HDVIITKEAPNYRLE"
BASE COUNT          512 a         1202 c         1058 g          471 t
ORIGIN      
        1 tggcgcgtcg cctccgcggg ctccgacgag gtgcgcctct cctacaaggt cttcgccgac
       61 gacctctccg gcaccttctc gcagctagac gagcgccacg ccaacttcaa cggcggctcc
      121 gtcttcatgt acgtcgcggg ccacaagcag gacgacgtga ctctgaagat actcgcgccg
      181 cgcggctggg ccgtcgtctg cggcgcctcg accaccttcg accagaccga gttcaacttc
      241 cccgactacg acacgctcat agacacgccc acggaagtcg cgcccggcct cgacctgacc
      301 ttcttccgcg tcggcgacaa gagctacacc gtggccgtcc acgccctcgg cgagcggggc
      361 gaccgcatgg acgacttcgt cggccgcctt gagaggatcg tgcgcgcgca gatagcgacg
      421 atgggcgagc cggacttctc cggctacgtc ttcctcttcc acttcgaccc cgaagcgcgc
      481 cgcggcgacg gcatggagca cctcaactcc acgcagataa tcgagacggg gccgatggcc
      541 gaccgcgcct tcttcgacgc ggcggtctcg acggcctcgc acgagttctt ccacgtctgg
      601 aacgtcaagc gcctgcggcc cagagggctc ggcccctggg actacacgcg ccccgtcgtc
      661 acgcgcggcc tgtggatagc cgaggggttt acgaactact atggcaagct cttcgagcgc
      721 cgcgccggcc tcctcgacga ccaggagctt ttcgacagct acgcgggcgc catcaccgag
      781 gtagagaacg cgccgggcaa ccggctgacg agcgccgtag agacttctct gctcgcgccc
      841 ttcatagacc gcgccgtgca cgagcagcgc accaacctcc agaacactgt cgtcagctac
      901 tacccgaagg gcgagacgct cgcggtcgtg attgatctac tcatacgcgc gcgctccgcc
      961 gggcgcgcgt cgctcgacga cgtgatgcgc cgcgcttacg aagagttcta cgtgaaggcc
     1021 gagcgcgaca gctattacct gcgcgggcgc gcatacgaat tggaggagtt cgagcggctc
     1081 gcctcgcagg tcgccggctt cgacctcacg gacttcttca ggcgccacgc gcacggcgta
     1141 gagcccccgc cctacaagga ggcgttcgcg ggcgtcggcc tgcgcctggt gcgcgtgccg
     1201 gggcggttca atctctccgc gctcggcatc acgcccgacg acccgaagga gacgaagcgc
     1261 ctgcgcgtcg gctccgtgca gaagggctcg ccggccgagc gcgcggggct gaaggccggc
     1321 gacacgatca cgcgcgcggg cggcgaggcc ctcgccgagg gcgccacgtg ggagagcgcc
     1381 ttcggcaagt acaaggccgg cgagagcgtc ttggtcaccg ccgagggcgc ctcgggcgag
     1441 agtcgccctc tcaccctcac gctcaccata ggcgcctcgt cgcgcacaga gttccgcatc
     1501 gagaaggacg acgccgccac gcccgccgcg cgcgcacttc gggaggcgtg gctcacgggg
     1561 aaggacaggc gctgaagggc cggaacaatc gagccgccgc gcgcgtctaa gcctccgact
     1621 ggcaccggag attgtcgagg cttacacaga cgatgggcgg aacaatcagg aacctcttct
     1681 tagcgtccgt gctgctcgct ttgtgcgcga ccggcagcat ctacttcggc cagcaacacg
     1741 ccgcgagcgc cgccgccacc gcgcagcagc aagcgaaccc cctggctcaa cagttcttcg
     1801 cagagcccgg cgacggctgg gtgctcgcgg gcggcttcct cgtcctggtc gccctcgcct
     1861 tcgccttcgc gggcggcatg ctctggttgc aggagaggaa gggctgaaga acagaaggca
     1921 ggaggcagcc ggagaaagct tcctgactgc ctcctgcctt cttcaaggga tgatgacttc
     1981 gatgccctcg ggggccatct cgaaggtcat gggcagttcg cctatgagct cgccgtcggc
     2041 ctgtacctgc gcgtcgccgg tggcgcgcac ccgcgcggcg cggcggaagc agactcccgc
     2101 ggccccgtgc tcgggcgcgc ccccgcgcat cgcccggccg agcaggtaga ggtagcgcag
     2161 gcggctccgc gagttgatga cgcagacctc gaaggtgtcc gcgtcgaggc gcgcgcgcgg
     2221 ggtgatggcg agcccgccgc cgtaccacgg cgccttgccg atggccgcgt aggtggcggg
     2281 caggcgctct ccgccgacct ctacggtgaa gacgcgcggc cgccagtgcg ccagatgccc
     2341 gaggcccgcg taccagaacg ccgcctcacc cacacgcctc ttcagtcgcg gccggacgtg
     2401 ccgcacgacg gaggcgtcca gccccacgcc cgccatcatg aagaagtagc gtcgctcgcc
     2461 cgtgcgaacg ctcgtcgcga ggccgagcgt tatcctgcgc gaacggccgc gcaggaacac
     2521 ctcggccgca gccgcggcgc ccgccggaat ctttagctgc cgggccagca cgttcgccgt
     2581 ccccgccggc caagccaaaa gccgcgcgcc cgagccggcc aactcctgaa tcgcctcgtg
     2641 gacggtgccg tcgccgccgc gaacgaccac atcccgcacg cccgcgcgca cggcgagccc
     2701 ggccagccgt cccgcgtcgt tcggcccccg cgtccgctcg accgagagcg agacgccgcc
     2761 ccgctcaagc cgctcgcgga acgccccgac ctcgcgctcg cgcgccgcct cgcccccgcg
     2821 ccccgcgccc gggttcagga tgagaacggc ccttcgcttc tcactcatgg cgaacactaa
     2881 aagcaatcgc ggtgccgcca gccgccggcc cgggaccctc gacggcgcga atgccgcccc
     2941 tgcgcccaca gcatcgttta cacgacaact gtccggccgt ggttgccggc taaagcggag
     3001 ggcgcgggcg tgccttgcga ctcgcccgcg cccgctgccg taagcgtcgg cagtcacccg
     3061 cgctattcga gcctgtagtt cggcgcttcc ttcgtgatga tcacgtcgtg gacgtgcgac
     3121 tctttgaggc cggcggggct tatgcggacg aagcgcgttt tttcctggaa ctcgcgtata
     3181 ttgcggcagc ccgtgtagcc catgccggcg cgcaggccgc cgacgagctg cgtcaccatg
     3241 tcg
//
LOCUS       DASPKR010000287         4420 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_683843, whole genome shotgun sequence.
ACCESSION   DASPKR010000287 DASPKR010000000
VERSION     DASPKR010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4420)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4420
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_683843"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(127..1512)
                     /locus_tag="VD968_07925"
     CDS             complement(127..1512)
                     /locus_tag="VD968_07925"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE14351.1"
                     /translation="MSRKIRVLVVDDDDVLRKLVSDQIARTGFDSTPAASGEEALAAL
                     ARSDFDVVLLDIRMPGMSGLDALREIRKLEDPPEVIMLTADTSLPTGIEAMRLGAYDY
                     LTKPSTLDEIEAVVRKADEKRRLVRQNASLREAVGRPSGEDSTPLVFKSKAMEGLVAL
                     AETAARSDSTVVITGESGTGKDVLARFIHSRSSRADSPVISVNCAALPETLFESEFFG
                     HERGAFTGATATKRGLIEAADGSTLFLDEVGEMPLQTQVKLLHFLEEGRYRRVGATRD
                     RSADVRVIAATNRNLADDVTAGRFRADLFYRLNVISLHVPPLRHRREDVPALVEHFLA
                     VFRERFNRPALDLSAEARERLAAYDWPGNVRELRNALERAAALADSDHIEAERILPNF
                     RAGGGGAGGAAPAAAGAAAAAGAPATLEELERQHILRVLEQTGGNRERAAAVLGISAR
                     TLYRKLREYGE"
     gene            complement(1598..3229)
                     /locus_tag="VD968_07930"
     CDS             complement(1598..3229)
                     /locus_tag="VD968_07930"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE14352.1"
                     /translation="MTEMSDDTAAGRPTVFDLGGGGGGANLQNIAETIRRTVGADTAS
                     IARFSAAERTITWLAMSGFQKLRADAGEIVNPLRGEFAERAAASGETLIEVRGLAGDL
                     PRSEFPLHSAEGVRDLALVPLVARGETLGVVVVGYRAAHRFSAEERRLLEGLAEMAAP
                     ALDNERLLATLAAARRVWEQTFDAIPDGIIVHDDRMLVVRSNAAAAEMMGLQPAEVAG
                     MTCADAFARLFGERAAAYHMRQGGSRVTSSFELQAEDGRRYLVSVAPLTDLATGGVGP
                     REAEGGERPSSWSVITWSDITTLAEVQEQLARSRRLAATGQLAAGVAHEINNPLAAIT
                     TCAEATLRGLREDAGTARMAEERGLSYYQEEIVRQALRCKQITRGLLDLSRQKRARRE
                     PVDFNRIVEQTARLFEQRGRERGVTVTASLDPAAGEVATDEAMLVQILDNLLSNALDA
                     VSEGGRVEVSTALDGERVRAEVRDDGPGIPPDTLARVFDPFFTTKDPGRGSGLGLAIS
                     LTFAEAMGGALTVESKPGAGSRFRLWLPRRTPEKQ"
     gene            3425..4114
                     /locus_tag="VD968_07935"
     CDS             3425..4114
                     /locus_tag="VD968_07935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14353.1"
                     /translation="MKHGIQQAGRWMSEERRAVALKRVAEVLGWLTAAALFAFASHAV
                     LAQQQSDDEFIIEERRMEIGGLFTAVNLEGFEETSKGVGARFAYNINRNFAVDAEASV
                     MPSGRFGNRAFGDRAQGFVGLKAGARNSRVGLFAKARPGVMFIGEVTSGFDCDRTGFG
                     QVCRPQHSQFALDLGGVLEFYPTPGTIIRFDAGDTLVRLRTASGFFGGRQSSTDLTHN
                     FQASIGFGYRF"
     gene            complement(4195..>4420)
                     /locus_tag="VD968_07940"
     CDS             complement(4195..>4420)
                     /locus_tag="VD968_07940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14354.1"
                     /translation="LTRVETRPDPFFGVNVPVSVPGVPSDVLTPRNTWKDKAAYDAKA
                     QELARRFNENFKKYEAGVTPEVRAAAPKAD"
BASE COUNT          636 a         1489 c         1595 g          700 t
ORIGIN      
        1 tggccggtca tcaccacgaa ctgcgcgcgc tcgatgtttt cagcttccat gtctgccgga
       61 gaaaggaacg tcagaaaggt tcgcgagact tataccacca accgcgcccc gccgtgaacg
      121 acttcttcac tcgccgtact cgcgcagctt ccggtagagc gtgcgggcgg agatgccgag
      181 gacggccgcc gcgcgctcgc ggttgccgcc cgtctgttct agcacgcgga gtatgtgctg
      241 gcgctctagc tcttcgagcg tcgctggcgc gcccgcggct gcggccgcgc cggctgcggc
      301 cggggcggcg ccccccgcgc ccccaccccc ggcgcggaag ttcgggagga tgcgctcagc
      361 ctctatgtgg tctgagtcgg cgagggccgc ggcgcgctcg agggcgttgc gaagctcgcg
      421 gacgttgccg ggccagtcgt acgcggcgag gcgctcgcgc gcctccgcgc tcaggtcgag
      481 cgcggggcgg ttgaagcgct cgcggaagac ggcgaggaag tgctcgacga gcgcgggcac
      541 gtcctcgcgt ctgtgcctga gcggtgggac gtgcagagag attacattca gccggtagaa
      601 gaggtctgcg cggaagcggc cggctgtcac gtcgtctgcg aggttgcggt tcgtcgcggc
      661 gatgacgcgc acgtcggccg agcggtcgcg cgtcgccccg acgcggcggt agcgcccctc
      721 ctcgaggaag tgcaggagct tgacctgcgt ctgcaagggc atctcgccca cctcgtcgag
      781 gaagagggtc gagccgtccg ccgcctcgat gagcccgcgc ttcgtcgcgg tggcgccggt
      841 gaaggcgccg cgctcgtggc cgaagaactc cgactcgaag agcgtctcgg ggagcgccgc
      901 gcagttgacg gagatgacgg gcgagtcggc gcgcgacgag cgcgagtgta tgaagcgcgc
      961 gagcacgtcc ttgcccgtcc ccgactcgcc ggtgatgacg acggtggagt cggagcgcgc
     1021 cgcagtctcg gcgagcgcga caaggccctc catcgccttg ctcttgaaga cgagaggcgt
     1081 ggagtcctcg cccgacgggc gccccacggc ctctcgcagg ctcgcgttct gccgcactag
     1141 ccgccgcttc tcgtcggcct tgcgcaccac ggcctcaatc tcgtcgagcg tcgagggctt
     1201 cgtgaggtag tcgtaggcgc cgagccgcat cgcctcgata cccgtgggga gcgaggtgtc
     1261 ggccgtgagc atgatgacct cgggcgggtc ttcgagcttg cgtatctcgc gcagcgcgtc
     1321 gaggccggac atgccgggca tgcgtatgtc gaggagcacc acgtcgaagt cgctgcgtgc
     1381 gagcgccgcg agcgcctcct cgccggaggc cgcgggcgtt gagtcgaagc ctgtgcgagc
     1441 tatctggtcg gagacgagct tgcgcagcac gtcgtcgtcg tccacgacca gcacgcgaat
     1501 ttttctgctc atagggtctg cggccggagt ccccgtgcga agggcaaggt ggcagaaagc
     1561 cgggagcgca tcttatagct caaagggggc cgggttgtca ctgcttttcg ggcgtgcggc
     1621 gcggtagcca cagacggaag cggctgcccg cgcccggctt cgactcgacg gtgagcgcgc
     1681 cgcccatcgc ctcggcgaag gtgagcgaga tggcgaggcc gagccccgag ccgcggccgg
     1741 ggtctttcgt ggtgaagaag gggtcgaaga cgcgcgccag cgtgtcgggc ggtatgcccg
     1801 ggccgtcgtc gcggacttcg gcgcgaacgc gctcgccgtc gagcgccgtg gagacttcca
     1861 cgcggccccc ctccgagacg gcgtcgagcg cgttcgacaa gaggttgtcg agaatctgga
     1921 cgagcatcgc ctcgtccgtg gcgacttcgc cggccgccgg gtcgaggctg gccgtcacgg
     1981 tgacgccgcg ctcgcggccc cgctgctcga agaggcgggc cgtctgctcg acgatgcggt
     2041 tgaagtcaac gggctcgcga cgcgcgcgct tctgccgcga gaggtctaat aggccccgcg
     2101 ttatctgctt gcaccgcagc gcctgccgga ctatctcctc ctggtagtaa ctgagcccgc
     2161 gctcctcggc catgcgcgcc gtccccgcgt cttcgcgcag cccgcgcagc gtcgcctcgg
     2221 cgcaggtcgt tatcgccgcg agcgggttgt ttatctcgtg cgcgacgccc gcggcgagct
     2281 gccccgtggc cgcgaggcgg cgcgagcgcg cgagctgctc ctgcacctcc gcgagcgtcg
     2341 ttatgtcgct ccaggtgatt acgctccacg aggaggggcg ctccccgccc tcggcctcgc
     2401 gcggccccac gccgcccgtc gccaggtctg tcaggggagc gacggagacg aggtagcgtc
     2461 ggccgtcctc tgcctgtagc tcgaaggagg aggtgacgcg cgacccgccc tgccgcatgt
     2521 ggtaggcagc ggcgcgctcg ccgaagaggc gggcgaaggc gtcggcgcag gtcatccccg
     2581 cgacctccgc gggctgcaag cccatcatct cggccgcggc cgcgttcgag cgcacgacga
     2641 gcatacggtc gtcgtggacg atgatgccgt cgggtatggc gtcgaaggtc tgctcccaga
     2701 cgcggcgggc ggccgcgaga gtagcgagaa ggcgctcgtt gtcgagcgcg ggcgctgcca
     2761 tctccgcgag cccttcgagg agccgccgct cctcggcgct gaagcggtga gcggcgcggt
     2821 agccgacgac gacgacgccc agagtctcgc cgcgcgccac gagcgggacg agcgcgaggt
     2881 cgcgcacgcc ctctgcgctg tgcagcggga actcgctccg cggcaggtcg cccgcgaggc
     2941 cacgcacctc tatcagagtc tcaccggagg cggcggcgcg ctcggcgaac tcgccccgga
     3001 gcgggttgac tatctcgccc gcgtcggccc gcagcttctg gaagccgctc attgcgagcc
     3061 acgtgatcgt gcgctcggcc gccgagaagc gagcgatgct cgccgtgtcg gccccgacgg
     3121 tgcgccgtat ggtctccgcg atgttttgca ggttcgcgcc gccgcccccg ccgccgaggt
     3181 cgaagaccgt cggccggccc gccgccgtgt cgtcactcat ctcagtcatc tcgcccatat
     3241 cttgccagaa aatggaggaa atggtgaggg ccgaattcgg ggccgggcgc cgtcgcaatt
     3301 ttctttcacc tgtgacgggc gcgttcacgc gcggcggcgg ggctcgcgag caggcccgcg
     3361 ccttttcgag gcacgccgag gcggcacgcc cgttgccatc gcaggcgggc ggagggaaac
     3421 gaccatgaag cacggaattc aacaggcggg gcggtggatg tcggaagaga ggagggcggt
     3481 cgcccttaag agggtcgcgg aagtcctcgg gtggctgacg gccgcggcgc tcttcgcctt
     3541 cgcgagccac gcggtgctcg ctcagcagca gtcggacgac gaatttatta tcgaggagcg
     3601 aaggatggag attggcgggc tgttcacggc cgtcaacctc gaaggcttcg aggagacctc
     3661 gaagggcgtg ggcgcgcgct tcgcctacaa catcaacagg aacttcgccg ttgacgccga
     3721 ggcgagcgtg atgccttcgg gcaggttcgg caaccgcgcc ttcggcgaca gggctcaagg
     3781 cttcgtcggc ctcaaggcgg gcgcgcgcaa cagccgggtc ggcctcttcg ccaaagcgcg
     3841 gcccggagtt atgttcatag gcgaggtgac gtcgggcttc gactgcgacc gcacgggttt
     3901 cggccaggtc tgccgccccc agcacagcca gttcgcccta gacctcggcg gcgtcctcga
     3961 attctacccg acgcccggca cgatcattcg cttcgacgct ggcgacacgc tcgtgcgcct
     4021 ccgcaccgcg agcggcttct tcggcggccg ccagtcctcc actgacctca cgcacaactt
     4081 ccaggcgagc atagggttcg gctaccgctt ctgaaaaagg cggcgggcgg aaagggagaa
     4141 gggtgacggg aggaagcgtt cccccgtcac ccttctccct ttcgcccgcg cccttcagtc
     4201 ggccttcggc gcggcagcgc ggacttccgg cgtgacgcca gcctcgtact tcttaaaatt
     4261 ctcgttgaaa cggcgggcca gctcctgcgc cttcgcgtcg taggcggcct tgtccttcca
     4321 tgtgttgcgg ggcgtgagca cgtccgaggg gacgccgggg actgagacgg gcacgttgac
     4381 gccgaagaag gggtcggggc gcgtctcgac ccgcgtgagc
//
LOCUS       DASPKR010000288        19824 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_426808, whole genome shotgun sequence.
ACCESSION   DASPKR010000288 DASPKR010000000
VERSION     DASPKR010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 19824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19824)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19824
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426808"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..291
                     /locus_tag="VD968_07945"
     CDS             <1..291
                     /locus_tag="VD968_07945"
                     /inference="COORDINATES: protein motif:HMM:NF037628.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14355.1"
                     /translation="LSALEPFGAGWPRPVFATRGLKVIGEPRVVKGRHLKFRALASDG
                     RVHEAIWWGAAEVETATPRPGQSIELAYTVEANCWRGDTRLQLVVEDLKAES"
     gene            349..2754
                     /gene="lptC"
                     /locus_tag="VD968_07950"
     CDS             349..2754
                     /gene="lptC"
                     /locus_tag="VD968_07950"
                     /inference="COORDINATES: protein motif:HMM:TIGR04409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HYE14356.1"
                     /translation="MGLRAAAPKVVRVAALVLIVAGVGAVIVSYLRLKDRKEFRLRPG
                     VAQLSTEVVGVIDNLEHRDMKGGKLRMLLRAARDVKFSDGHHELDNVYLEVYPEQGDR
                     PDKISAQRTLTNEDNTQFYFTGSVRVETRDQLVVNADTVEYDMRTETGAVTSPVTFER
                     ENVAGRADSATVDARAQRLELKGGVEITVRPDAPKPEGAEPAVLPKVNLRGLPVTVKS
                     AQAAFDQKKLEIAFSGGATAEQGQDLMSGETLSGLLSEQKRVKQIEARGSAYLRTLNE
                     GRAAEVFAGEMFFFFDPEQKLTAANALNNVRARTLDADAEAQLNASGAVNLEFAVQGE
                     RSLLKEMRAGGRPVVTLAAPKSKAGDPKAANKRLTADGVRLYWRVTGRDLQRAEADGN
                     AELLVEPVNPTPAADKKMLYAARFDCDFYEAGNLARTFTATGGPRAVVEPLQPSETRA
                     TRTLTSQMMVAQFVRETQDVERFDAKGDARFQERDRTLTSREMVALFSRATQALERVD
                     ANGDARFNELDRNGQSDVMTYTAADGVVRLRGGEPTVWDSRARLKAAEIDSDTRARVS
                     HGRGKVLTTYYSQEQTNGAAPFKNVKSPVYIASASAEFQHDAGVGVYTGNARAWQDDN
                     FVRADRLVLRREQRRMDGEGGVQSALYQARRAEPGGARTAVPVFATSRRIAYTEAERL
                     LHYEGDVDIKQGTERITSQVADVYLSPGAYEVERTVAQREVVVTQPGKRGTGDWAQYT
                     AADETVVLTGAPARVEDAERGTSESRRMTVYLRENRVVSEAGAASQQSTGRVRTRHRV
                     RKQ"
     gene            2757..3563
                     /gene="lptB"
                     /locus_tag="VD968_07955"
     CDS             2757..3563
                     /gene="lptB"
                     /locus_tag="VD968_07955"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR04406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HYE14357.1"
                     /translation="MATEQVTESAERTARGAAPSRAPAAAPSAEALAASDLVKQYGRR
                     RVVDGVSLHVEPGEVVGLLGANGAGKTTTFYMIIGLERPDGGRITLAGRDVTKLPMYL
                     RARLGVGYLPQEPSIFRKMTAAENILAVLETMGLRRRDRYQRLEELLEEFGIQHVRNT
                     RGDTLSGGERRRTEIARALATEPQFILLDEPFAGIDPKAVDDIQQMILYLRGRGIGML
                     ITDHNVRETLGVTDRAYIMADGRIFRSGAPAELTEDAEVRRLYLGEKFRM"
     gene            3681..5282
                     /gene="rpoN"
                     /locus_tag="VD968_07960"
     CDS             3681..5282
                     /gene="rpoN"
                     /locus_tag="VD968_07960"
                     /inference="COORDINATES: protein motif:HMM:TIGR02395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HYE14358.1"
                     /translation="MSVKLTTNLSQRLVLTPQLRQRIEMLQMTSLELSELIQQQMLEN
                     PVLEEVQTQEEQREIEREIIDQLAGTPDDAVPFDASAPESLNGNSTANGAGDAPAAEA
                     AYDSADGGEAAAPDEFGAEAEAPESPSDAFEEIDFGREFQDYLDPGYKTQEFEYKEDA
                     PTFEQFLTRAPSLSEHLTWQLHLNQIDEALLPIADCVIGNLDGDGRLNATNEEIAEPG
                     GWPADKVEEARQVVMRLDPVGCGARDARECLLVQLETRGRDDCPRGADACMAAALISS
                     HPLSELQQHKLPNLAKHLGVEVVELVNELQHIRRLDPYPGRAYSSEEPILIVPEVFIE
                     KVDDEYEIYFADDGGPRLRISSTYQQMLGRQTTTKEERDFIKDKMRSAVDLLRNIEHR
                     RQTIYRVVECIVRRQREFLDKGVQFIRPMMLKDVAEDTGMHLSTVSRVVNRKYAHTPQ
                     GVIELRRFFTEGMMNEDGEEVSTRIIKLKIKKLIEDEDSRNPITDDQVVKILAGDGIR
                     LSRRTVAKYRDQMQIPGSRERKAVV"
     gene            5470..6024
                     /gene="raiA"
                     /locus_tag="VD968_07965"
     CDS             5470..6024
                     /gene="raiA"
                     /locus_tag="VD968_07965"
                     /inference="COORDINATES: protein motif:HMM:TIGR00741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_component: GO:0022626 - cytosolic ribosome [Evidence
                     IEA];
                     GO_function: GO:0045182 - translation regulator activity
                     [Evidence IEA];
                     GO_process: GO:0009386 - translational attenuation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HYE14359.1"
                     /translation="MEFEYTGRHVDVTPAIRAHVEEHFGKIGQLFENSTTARAHVIID
                     VVKNRHIAEILLHWREHTLTAKDTNVDMYQALTRCMDKLEKQAVKLKKKMIERKQSAT
                     PLSALAPQAGAGAAAAPAQEPAARGPRIITARRYRVKPMTAEEAAMALADDGDQFVVF
                     RDSDTDRVSVLYKRKDGNFGLIQP"
     gene            6072..6677
                     /locus_tag="VD968_07970"
     CDS             6072..6677
                     /locus_tag="VD968_07970"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HYE14360.1"
                     /translation="MHRRKLAAALVVVALAAAAARAAVTAYEADTAHSNVGFSIPIMG
                     GLSHVRGKFNDFSVQITYNDADVTKSSVVATIKTASIDTGIERRDAHLRTADFFDAEK
                     FPEITFRSARVEKKGNDFVAHGTLTMHGVSKEVALPFTINGVRKNPKDGKTTLGVTAR
                     TTLDRRDFGISFSRPDIPDFLGDMVEIELNVITRAASPQQQ"
     gene            6704..7693
                     /gene="hprK"
                     /locus_tag="VD968_07975"
     CDS             6704..7693
                     /gene="hprK"
                     /locus_tag="VD968_07975"
                     /inference="COORDINATES: protein motif:HMM:TIGR00679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr(Ser) kinase/phosphatase"
                     /protein_id="HYE14361.1"
                     /translation="MSSPGQRPSITVAEFVARSPERLRLGFLAGGAGAASRTLDTPRI
                     QKLGLALAGFTHYVHAGRVQIVGQSEIQFLGQLDPAGRRGAISNLELEKISCVLVTKG
                     LDPPPELIEAAEAAALPLIQTPLVSSVAIGAVTEYLEEALAPREVRHGVLLDLYGLGV
                     LLEGSSGVGKSECALDLIVRGHQLIADDMVEIRRTRPGQLMGSAPELLREHMEIRGLG
                     ILNVRELFGVSAVSGPKQIGLGIRLERWEGAGEVDRLGLDERTVEILGVAVPHFVLPV
                     SPGRNLATLVETAVRVHLLRGRGYNAAEKLVARHDERLGRAGGGSGGGAGDGR"
     gene            7683..8654
                     /gene="rapZ"
                     /locus_tag="VD968_07980"
     CDS             7683..8654
                     /gene="rapZ"
                     /locus_tag="VD968_07980"
                     /inference="COORDINATES: protein motif:HMM:NF015620.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HYE14362.1"
                     /translation="MADKRRAGKDGGRAGAPDVVIITGLSGSGMSSATNAFEDLGYFC
                     VDNLPLTLLPTFARLVQPEDHNRPHIERAALVINIREGHFLREFPERLKELRDSGLNV
                     FVLFLEASDEVLVRRFSETRRPHPADTGDGVLESIRGERAAMEEIRALADQVIDTSEH
                     TVHTIRRLLIERFNPGQDGAPMRVHVLSFGYKHGCPRDLDLLFDVRHLPNPYFVPELR
                     DYSGHDRRVVAYLNKSDEVRETLRRFTELIDYLLPLYRREGKSYVTIGIGCTGGRHRS
                     VMTANHIARHLRRLGYDATAVHRDVGKARKKPAKKRAAAEAGVVGAK"
     gene            8669..9118
                     /locus_tag="VD968_07985"
     CDS             8669..9118
                     /locus_tag="VD968_07985"
                     /inference="COORDINATES: protein motif:HMM:NF015567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HYE14363.1"
                     /translation="MPDKAKDEPAAPRVAGVIVSHGQFANELLAAAETIIGPIKHITA
                     VSIGWHDDVDAASNEIERAAARVSEGGGVLLLTDMFGGTPTNIASMFLKDGEVEVVTG
                     VNLPMVIKLASQQGGEPLADVARLVRDQGRQGIYLAGEMLAGGARKA"
     gene            9115..9408
                     /locus_tag="VD968_07990"
     CDS             9115..9408
                     /locus_tag="VD968_07990"
                     /inference="COORDINATES: protein motif:HMM:TIGR01003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HYE14364.1"
                     /translation="MRAAAMVEREVRVVNRLGLHARAAARLVRTASAYACALRIERED
                     RSASADAKSILSVLMLAASRGTRLRVTADGAGEGEALGAVCDLISSGFGESEE"
     gene            9405..11213
                     /gene="ptsP"
                     /locus_tag="VD968_07995"
     CDS             9405..11213
                     /gene="ptsP"
                     /locus_tag="VD968_07995"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008965 - phosphoenolpyruvate-protein
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HYE14365.1"
                     /translation="MSRRKKRETRWGGTTVSDGVAAGRVLRVHDGGRHNIYRVTLRPD
                     EVEREVRRYSAAVRLSRRQLLALKKRAVRALGDEHAYIFDAHLLMLEDSKLNEDVAAI
                     IRSERVNAEWAVKVVTDRVLAVYEEIKDDYLRERSSDVEDVARRLLVALSGESMSGRN
                     LTEDAVIVAEELMPSTIAELDFKHVKAVVTDVGGWTSHTAIIARGLGIPAVVGLRDFY
                     RSARTGDHVIVDARTGEVVLHPEPPTLEALRLAGGERTGSSAAATAAPAEELRAPLLT
                     TDGVEVVLRANVELPVEHEWVARYGARGIGLYRSEFLLAHRGAMPGEEEQRGAYEELA
                     RVAGDDGLTVRLFDLGGDKSGGYRLEAGDERNPALGLRAIRFTLKRENLLRTQARAVL
                     RAAARGRVDLVLPMISDVTDVRRARQVIDEERARLEAEGLECGPVKIGAMIEVPSAVL
                     TAERLAREVDFFSLGTNDLVQYTLAVDRGNDEVADWFRSLHPAVLQSIARVITAARDA
                     GIPSNVCGEMAGTPAYAVVLLGLGAREFSMAPPSIPRVRRAVAGVSARDAERVASECL
                     TCGTADEVEELVRSRFAELWPRLFPPETLPRLKTRE"
     gene            11335..12609
                     /locus_tag="VD968_08000"
     CDS             11335..12609
                     /locus_tag="VD968_08000"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HYE14366.1"
                     /translation="MKRFFFAVVVALAFCAAGARAANWQAPGVRVGPLAEEVAPAAPN
                     GGAAKKDEKKAPAPREIKGDRKAAEAKKNSAPPEKAADTKAGDSKTEQPAPLSASASS
                     AVPPASPPAATSDAPDKPRANAAHVPFVNPSGSTAKEAVGPDPAAPSHSNNPSTTTAT
                     PSAATAGPAGPAARPAAPLTAVYRIGVGDVLDIRTLNEQDPRQSTLFTVLAGGVLDYP
                     LLPDPLTVAGMTTEELSAQLVAEFRHRNIYDRPQVRVSVREYASHAVLVSGLANDPGT
                     KILRREAVPLYVVIAEAQPKPEAGRAVVISHSTGKTTSVDLSDAAALNMLVQQGDVIN
                     LTARPPEFFYAGGEIASPGQKDFHAGMTLTQGLLASGGVTRFSSGRVRVSRQGPDGRL
                     VSTEYNLKEIEDGRAPDPPLQAGDRVEVTRKK"
     gene            12798..15173
                     /locus_tag="VD968_08005"
     CDS             12798..15173
                     /locus_tag="VD968_08005"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14367.1"
                     /translation="MSKWNRIGAAALSAALLFAPLTAFAAPARALAAQRQDDTPTDAE
                     QAVFNRGRDLFSKGQYEQAAAVFRDFLKSNPDSYVADLMLLWLGRSYIELGKLREAEE
                     VAQRLRAMQDTPFADIYQSELENAQREAATRPAPAARPTPTPRPVEVARATPTPAPAR
                     NNANTRPPANTNLPQSREIARAATNTNSNTPTLTIRGGGDATRPRNAGRQSRRATQPA
                     TTAATPVATPTPRPVEVARATPTPAPSRRETAASTAAAARPSPPPTPTPTPVRVAEVR
                     EQPSAMTAVTSAGPDTTQPQGGFSITVKQVPNLQLALRRAALAAQPGQAIQLPLIITN
                     TGNKEDQFRLETDLPAEYQPTFSQSGAGTDMPIFVTPQMARGANLEVTLNLRVPDNAP
                     DNQQQRFLVRASSQADSTVAKVSDASLTVVAAALAAASNALQESVMPGDTFTQRISVR
                     NQGSATARGTRADFVFNQDFELVSATPAPINYDRPSRTAIWSLGELDSRDNREITVTL
                     RAVPEALAGPNKPVGRGTMRTQSLVIPSNFDGPTISVGRVARAQVDSVSSGLTATPGD
                     TIFVPFIVRNPSNYPEAFEMRITAPGAPPATVYADLNGDGRHQDGEPAVTQTSSLDPR
                     GGQFPVLLRVDIPRSTPDGQQFAYNLVTRALSATGRVASEANTVLRVATPRVRVRAEL
                     GNSQPAPGETIFYRLVLVNDGGGLARNLAVTEYLPDALEFVSSSPELSLQDMPGGARG
                     FVWRLNELAPGDTAVLLVTVRLRQNLPADAVITPRHTLTFQDSNGNGYHGQ"
     gene            15170..15751
                     /locus_tag="VD968_08010"
     CDS             15170..15751
                     /locus_tag="VD968_08010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14368.1"
                     /translation="MSEAAARELEGAEGNPGEGTAPRAPLHMSESQPAPASPRAETAA
                     LTPAAARRVTTLVIAKGALDLLFVSALAVGFSYFAFHPHFRGSLDHADARSVRGWVVD
                     RARPERPVEVQLYVDGRFVAAALADRPRPDVHARGYAPDERHGFVFDFGDSLQGGGEH
                     EARVYAVHSSDDGERRTLQLVGRPLRFGAGPGR"
     gene            15760..16452
                     /locus_tag="VD968_08015"
     CDS             15760..16452
                     /locus_tag="VD968_08015"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HYE14369.1"
                     /translation="MLPSNRQSVISNQQPGARALAAWEIISVVSSVVIAEWVVFAVAG
                     DSAPALAFPVGSVLVFMFLSHRARGETAREVGWRMDNFGRAAKLLLPPMIVLSVPLLA
                     FGWLAGNLDLTRWRGGQTILGTPALGALWGFLQQYALQGFINRRAQLLWGPGRKSVLL
                     VAIVFALLHLPNPWLTAATFAAGLLWAYTYQRAPNLFALGLSHAAMTWVLVSAVPPQA
                     LHNLRVGFKFFR"
     gene            16558..17050
                     /gene="rnpB"
                     /locus_tag="VD968_08020"
     ncRNA           16558..17050
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VD968_08020"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            17134..17409
                     /locus_tag="VD968_08025"
     CDS             17134..17409
                     /locus_tag="VD968_08025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14370.1"
                     /translation="MANRKGVFIGAYVPAELKKALQQRAVSEHRTLSQEITRILEEAV
                     KGPRLPPNFVERRAPGSGPRRRNSDPLPRRRKDDLPYNPEGQGSGEG"
     gene            17428..18234
                     /locus_tag="VD968_08030"
     CDS             17428..18234
                     /locus_tag="VD968_08030"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14371.1"
                     /translation="MAEQKLASKREVIVLAAGLIVGFVAGFALANGVNRGEHDRLRAE
                     LTRLRSGGAGSGTEPGRPAAAADSGDATVIPDLTQEQLRKAVADADARPGDLELQRTA
                     GQGLYLYAMQKGDASILPDAARILRRAHDADPKDYQLAVIAANAHFVVARSGGDSAAL
                     KSARELYEAALAEKPDDVIARTSLGLTYFYDRPPDVRRAVREYRRALEVNPRHEMTLQ
                     SLAAALVEAGELEEAARRLSELESVNAENSELANLRAQLEQKRNAAREKP"
     gene            18234..18563
                     /locus_tag="VD968_08035"
     CDS             18234..18563
                     /locus_tag="VD968_08035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14372.1"
                     /translation="MKYLLVLGLLALVVGLIYWRLRPYIQMVRRFLGAVREANRVREA
                     ARGDLPRQPTRRASHADRLVRCASCGTWLPASRAVRLGSANTTFCSHACLERSADAPR
                     KARKSAS"
     gene            complement(18586..>19824)
                     /locus_tag="VD968_08040"
     CDS             complement(18586..>19824)
                     /locus_tag="VD968_08040"
                     /inference="COORDINATES: protein motif:HMM:NF023128.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE14373.1"
                     /translation="VLDLGPLGSVTAQSFYQLFVAVAVGSQVLLLPVVGAVADYSHMK
                     KRLMAAFCYTGVAATCLLFFVTGKLYILGGVLFVVANLCFGGAVVLYNSFLPEITTED
                     QRDKVSSRGFALGYLGGGLLLAVNFGMVGVAPRLLAPYGYTEGEASGLAVRLSLLSAG
                     VWWGFFAFLAFRRLRQRAPARQLPPGKNYLTVGFSQLTETFRELRRLPHTLKYLVAYL
                     LYNDGIQTVIGSAAVFIAAELFAGGLDNPDAPAFVLSIFLFVQFMGIGGALLFERVAR
                     LTGTKRAILLSLVIWAGIVIYAFALFETRRQAWVMAAFIAVVLGGSQALSRSLFSRMI
                     PEGREASFFGIYEVSERGTSWLGPLVFSVVVARTGSFRYALLSLIVFFVAGTIVLSLT
                     DTDRAIREAGNALPEEAEAR"
BASE COUNT         3470 a         7018 c         6614 g         2722 t
ORIGIN      
        1 ctctcggcgc tcgagccctt cggcgccggc tggccccgcc ccgtcttcgc cacgcgcggg
       61 ctgaaggtca taggcgagcc gcgcgtcgtc aaggggcggc acctgaagtt ccgcgcgctc
      121 gcctcggacg ggcgcgttca cgaggccatc tggtggggcg cggccgaagt cgagacagca
      181 acgccccggc cagggcagag catcgaattg gcctacaccg tcgaggccaa ctgctggcgg
      241 ggcgacaccc gcctgcaact cgtcgtcgag gacttaaaag ctgaaagctg accgctgggt
      301 gcttctttcg tgatgcagga gattcgaacg aggaggaaag tttctgtttt ggggctgcgc
      361 gcggcggccc cgaaggtcgt gcgcgtcgcg gcgctcgtgc tcatcgtcgc gggcgtcggc
      421 gcggtcatcg tctcctacct gcggctgaag gacaggaagg agttccgact gcggcccggc
      481 gtcgcgcagc tctccacgga ggtcgtcggc gtcattgata acctagagca ccgcgacatg
      541 aagggcggca agctccgcat gctgctgcgc gcggcgcgcg acgtgaagtt ctcggacggc
      601 caccacgagc tagacaacgt ctatctcgaa gtctatcccg agcagggcga ccgccccgac
      661 aagataagcg cgcagcgcac actcacgaac gaggacaaca cgcagtttta cttcacgggg
      721 agcgtccgcg tggagacgcg cgaccagctc gtcgtcaacg ctgacaccgt cgagtacgac
      781 atgcgcacgg agacgggcgc ggtcacttcg ccggtcacct tcgagcgcga gaacgtcgcg
      841 ggccgcgccg actccgcgac ggttgacgcg cgcgcgcagc gcctggaact aaagggcggc
      901 gtcgagataa cagtccggcc cgacgcgccg aagcccgaag gcgcggagcc ggccgtgctg
      961 ccgaaggtga acctgcgggg cctgcccgtc acggttaagt ctgcgcaggc ggccttcgac
     1021 cagaagaagc tggagatagc cttttcgggc ggcgcgacgg ccgagcaggg gcaggacttg
     1081 atgagcggcg agacgctctc ggggctcctc agcgagcaga agcgcgtcaa gcagatagag
     1141 gcgcgcggca gcgcgtacct gcgcacgctc aacgaggggc gcgccgccga ggtcttcgcg
     1201 ggcgagatgt tcttcttctt cgaccctgag cagaagctca cggctgcgaa cgcacttaat
     1261 aacgtccggg cgcgcacgct cgacgccgac gcggaggcac agcttaacgc cagcggcgcc
     1321 gtcaacctcg agttcgccgt tcagggcgag cggagtctct tgaaagagat gcgcgcgggc
     1381 ggccgccccg tcgtcacgct cgcggcgccg aagtcgaagg ccggcgaccc gaaggccgcg
     1441 aacaagcggt tgacggccga cggcgtgcgc ctctactggc gcgtgacggg ccgcgacctt
     1501 cagcgcgcag aggccgacgg caacgccgag cttctcgtcg agcccgtaaa ccccaccccc
     1561 gcggccgaca agaagatgct ctacgccgcg cgcttcgact gcgacttcta cgaggccggg
     1621 aacctcgcgc gcaccttcac cgcgacgggc ggccccaggg ccgtcgtcga gcccttgcag
     1681 ccctcggaga cgcgcgctac gcggacgctc acgtcgcaga tgatggtcgc gcagttcgtg
     1741 cgcgagacgc aggacgttga gcgcttcgac gccaaaggcg acgcgcgctt ccaggagcgc
     1801 gaccgcacgc tcacctcgcg cgagatggtc gccctcttct cgcgcgcgac gcaggccctg
     1861 gaacgcgttg acgcaaacgg cgacgccagg ttcaacgagc tagaccgcaa cggccaatcg
     1921 gacgttatga cttacacggc cgccgacggg gtcgtgcgcc tgcgcggcgg cgagccgacg
     1981 gtctgggact cgcgcgcgcg cctcaaagcc gccgagattg attccgacac gcgcgcccga
     2041 gtctcccacg ggcgcggcaa ggtcttgacc acctactaca gccaggagca gacgaacggc
     2101 gccgcgccct tcaagaacgt caaaagcccc gtctatatcg cctcggccag cgccgagttc
     2161 cagcacgacg cgggcgtcgg cgtctataca ggcaacgcgc gcgcatggca ggacgacaac
     2221 ttcgtgcgcg ccgaccgcct tgtgctgcgc cgcgagcaga ggcgtatgga cggcgagggc
     2281 ggcgtgcaga gcgcgctcta ccaggcgcgc cgagccgagc cgggcggcgc gcgcaccgcc
     2341 gtccccgtct tcgcgacctc gcggcgcatc gcatacacgg aagccgagcg tctgctgcac
     2401 tacgagggag acgttgacat aaagcagggg actgagcgca tcacaagcca ggtggccgac
     2461 gtgtatctct cgcccggagc ctatgaggtc gagcgcaccg tcgcccagcg cgaagtggtc
     2521 gtcacgcagc ccggcaagcg cggcaccggc gactgggcgc aatacacggc ggccgacgag
     2581 acggtggtgc tcaccggcgc gccggcccgc gtcgaggacg ccgagcgggg gacttccgag
     2641 agccggcgca tgaccgttta ccttcgcgag aaccgcgtcg tcagcgaggc cggcgcagcc
     2701 agccagcagt caaccggccg cgtccgcacg aggcacaggg tcagaaagca gtgacgatgg
     2761 cgacggagca ggtgacagag tcggcggaga ggacggcgcg gggcgccgcg ccttcccggg
     2821 cgcccgcggc ggcgccgtca gccgaggctc tcgccgcctc cgacctcgtc aagcagtacg
     2881 gcaggcgcag ggtcgttgac ggcgtgagcc tgcacgtcga gccgggcgag gtcgtcgggc
     2941 tcctcggcgc aaacggcgcg ggcaagacca ccaccttcta catgataatc gggcttgagc
     3001 ggcccgacgg cggccgcatc acgctcgccg gccgcgacgt gacgaagctg ccgatgtatt
     3061 tgcgcgcgcg cctcggcgtc ggctacctgc cgcaggagcc ctcgatcttc cggaagatga
     3121 cggcggccga gaacatactc gccgtgcttg agacgatggg gctccgtagg cgcgaccgct
     3181 accagcgcct cgaagagctt ctcgaagagt tcggcataca gcacgtccgc aacacgcgcg
     3241 gcgacacgct ctcgggcggc gagcgccgcc gcaccgagat cgcccgcgcc ctcgccaccg
     3301 agccgcagtt catcctcctc gacgagccct tcgccggcat cgacccgaag gccgttgacg
     3361 acatacagca gatgattctc tacctccgcg gccgaggcat cggcatgctg ataaccgacc
     3421 acaacgtgcg cgagactctg ggcgtcaccg accgcgccta catcatggcc gacgggcgca
     3481 tattccgctc gggcgcgccc gccgagctga ccgaggacgc ggaggtgcgt cggctctacc
     3541 tcggcgaaaa attcaggatg tgacggctgt gcgcgcggcg gggcaaatcg gttataatca
     3601 atcgcgcggc cgcttcggaa ggcgcgccgg accgagattc ataagccgaa atttttaaga
     3661 agttagtagc tggcaggagc atgtcggtaa agctcactac aaacctttcg cagcgcctcg
     3721 tcctgacgcc acaactgcgc cagcgcatcg agatgttgca gatgacgtcg ctggagctga
     3781 gcgagctcat acagcagcag atgctcgaga accccgtgct cgaggaggtg cagacgcagg
     3841 aggagcagcg cgagattgag cgcgagataa ttgaccagct cgcgggcacg cccgacgacg
     3901 cggtgccttt cgacgcctcg gcgccagaat cgctgaacgg caactcgacg gccaacggcg
     3961 cgggcgacgc cccggcggcc gaggcggctt acgactcggc ggatggcggc gaggctgcgg
     4021 cgcccgacga gttcggcgcc gaggccgagg cgccggaaag cccttccgac gccttcgagg
     4081 agatagactt cggccgcgag ttccaggact acctcgaccc cggctacaag acgcaggagt
     4141 tcgagtacaa ggaggatgcc cccaccttcg agcagttcct cacgcgcgcg ccctcgctct
     4201 ccgagcacct gacctggcag ctacacctga accagattga cgaggcgctc ctgcccatcg
     4261 ccgactgcgt catcggcaac ctcgacggcg acgggcgcct caacgctacc aacgaagaga
     4321 tagcggaacc gggcggctgg cccgccgaca aggtcgagga ggcgcgccag gttgtcatgc
     4381 gcctggaccc cgtcgggtgc ggggcgcgcg acgcgcgcga gtgcctgctc gtgcaactgg
     4441 agacgcgcgg ccgggacgac tgcccgcgcg gcgccgacgc ctgtatggcg gccgctctca
     4501 tcagctcgca cccgctctcg gagctacagc agcacaagct gccgaacctg gcgaagcatc
     4561 tgggagtcga ggtcgtcgag ctagtcaacg agcttcagca catacgccgc ctcgacccct
     4621 atccgggccg cgcctattcg tccgaggagc ccatactcat cgtccccgag gtcttcatcg
     4681 agaaggttga cgacgagtac gagatttact tcgccgacga cggcgggccg cgccttcgca
     4741 tcagctcgac ctaccagcag atgctcggcc gccagacgac gacgaaggag gagcgcgact
     4801 tcatcaagga taagatgcgc tcggccgttg acctcctgcg caacatcgag caccgccggc
     4861 agaccatcta ccgcgtcgtc gagtgcatcg tccgccgcca gcgcgagttc ctcgacaagg
     4921 gcgttcagtt catacgcccc atgatgctca aggacgtggc cgaggacacc ggcatgcacc
     4981 tctcgaccgt gtcgcgcgtc gtcaaccgca agtacgcgca cacgccgcag ggcgtcatag
     5041 agctgcgccg cttcttcacc gagggcatga tgaacgagga cggcgaggag gtctccacgc
     5101 gcatcatcaa gctcaagata aagaagctca tagaggacga ggactcgcgc aaccccatca
     5161 cggacgacca ggtcgtaaag attctggccg gggacggcat caggctttcg cgccgcacgg
     5221 tggcgaagta ccgcgaccag atgcagatac ccggctcgcg cgagcgcaag gcggtggttt
     5281 aagggcagat gccggacgcc ggatgctgaa tatcggtgaa gaggcttggc cagcatcgag
     5341 catctgacat ccggcatctg ccccgagagt tttagcagtc taaattcagc caagccggtg
     5401 cggtcgggag agcagaggcc attcccccgt ccgccccttc gcgccgcaca ccggcggaaa
     5461 gggtgtttca tggagttcga gtacacgggc cgccacgttg acgtgacgcc ggccatacgc
     5521 gcgcacgtcg aggagcactt cgggaagatc gggcagttgt tcgagaattc gacgacggcg
     5581 cgcgcacacg tcatcattga cgtggtcaag aaccgccaca tcgcggagat actccttcac
     5641 tggcgcgagc acacgctcac ggccaaggac acgaacgttg acatgtacca ggcgctcacc
     5701 cgctgcatgg acaagctgga gaagcaggcc gtcaagctca agaagaagat gatcgagcgc
     5761 aagcagagcg cgacaccgct ctcggcgctc gccccgcagg cgggggcggg ggccgccgcc
     5821 gcgcctgcgc aggagcctgc ggcgcgcggc ccgcgcatca tcacggcgcg ccgctaccgc
     5881 gtaaagccca tgacggcaga ggaggccgcc atggcgctcg ccgacgacgg cgaccagttc
     5941 gtagtcttcc gcgattccga caccgaccgc gtgagcgtcc tctacaagcg caaggacggc
     6001 aacttcggcc tcatacagcc ctgacacggg ccgcgaaaaa atctaagccg aagcccccga
     6061 ggagagattc aatgcacaga aggaaactcg cggccgcgct cgtcgtcgtc gccctcgcgg
     6121 ccgcggcggc gcgcgcggcc gtcaccgcct acgaggctga cacggcgcac tcaaatgtcg
     6181 gcttctccat tcccatcatg ggcggcctct cgcacgtgcg cgggaagttc aacgacttct
     6241 cagtccagat aacctacaac gacgcggacg tgaccaagtc gtccgtcgtg gcgacgatta
     6301 agacggcgag cattgacacc ggcatcgagc gcagggacgc gcacctgcgc accgccgact
     6361 tcttcgacgc agagaagttc cccgagataa ccttccgcag cgcccgcgtc gagaagaagg
     6421 gcaatgactt cgtcgcccac ggcacgctca caatgcacgg cgtctcgaag gaggtggcgc
     6481 tgcccttcac catcaacgga gtgaggaaga acccgaagga cggcaagacc acgctcggcg
     6541 tcacggcgcg caccaccctc gaccgccgcg acttcggcat atccttcagc cgccccgaca
     6601 tccccgactt cctcggcgac atggtcgaga ttgagctaaa cgtcataacc cgcgccgcct
     6661 ccccgcagca gcagtgaggc ggcgccgccc gcgccgcccg cagatgagca gccccggcca
     6721 aaggccctcg ataaccgtcg cggagttcgt cgcgcgcagc cccgagcgcc tgcggctcgg
     6781 cttcctcgcg ggcggggccg gcgccgcgtc ccgcacgctc gacaccccgc gcatacagaa
     6841 gctcggcctc gcgctcgcgg gatttacgca ctacgtccac gccggccgcg tgcagatagt
     6901 cggccagagc gagatacagt tcctcggcca gctagaccct gccgggcgcc gcggcgccat
     6961 ctcgaacctc gagcttgaga aaatctcctg cgtcctcgtc actaaggggc tcgacccgcc
     7021 gcccgagctg atagaggcgg ccgaggccgc agcgctcccg ctcatacaga cgccgctcgt
     7081 cagctccgtc gccatcggcg ccgtcaccga gtatcttgaa gaggcgctcg cgccgcgcga
     7141 agtccgccac ggcgtgctgc tagacctcta cgggctcggc gtgctcctcg aaggcagctc
     7201 gggcgtgggg aagtcagagt gcgcgctcga cctcatcgtg cgcggccacc agctcatagc
     7261 cgacgacatg gtggagattc ggcgcacgcg gccggggcag ctcatgggca gcgcgcccga
     7321 gcttctgcgc gagcacatgg agataagggg cctcggcatc ctgaatgtgc gcgaactgtt
     7381 cggcgtctcg gccgtgagcg ggccgaagca gatcggcctg ggcataaggc tcgagcggtg
     7441 ggagggcgcg ggcgaggttg accgcctcgg cctcgacgag cgcacggtcg agatactggg
     7501 cgtcgccgtt ccgcacttcg tcctgcccgt cagccccggg cgcaacctcg ccacactcgt
     7561 cgagacggcc gtgcgcgtgc accttctgcg cgggcgcggt tacaatgcgg ccgagaagtt
     7621 agtcgcgcgc cacgacgaga ggctcgggcg ggcgggcggc ggttcagggg gcggggcggg
     7681 ggatggccga taagagacgg gccggaaagg atggcgggcg cgccggggcg cccgacgttg
     7741 tcatcatcac gggcctgagc ggctcgggga tgtcctcggc cacgaacgcc ttcgaagacc
     7801 tcggctactt ctgcgttgac aacctcccgc taacgctgct gcccaccttc gcccgcctcg
     7861 tgcagcccga agaccacaac cgcccccaca tcgagcgcgc cgcgctcgtc atcaacatcc
     7921 gcgagggcca cttcctccgc gagttcccgg agcgcctgaa ggagcttcgc gactcgggcc
     7981 taaacgtctt cgtgctcttc ctcgaagctt cggacgaggt gctcgtgcgc cgcttcagcg
     8041 agacgcgccg gccgcacccg gccgacaccg gcgacggcgt gctcgagtcc atacgcggcg
     8101 agcgcgccgc aatggaggag atacgcgcgc tcgcagacca agtcatagac acctccgagc
     8161 acacagtcca caccatccgg cgccttctca tcgagcgctt caatccgggg caggacggcg
     8221 cgccgatgcg cgtgcacgtc ctcagcttcg gctacaagca cggctgcccg cgcgacctcg
     8281 acctgctctt cgacgtgcgg cacctcccca acccgtactt cgtgcctgaa cttcgcgact
     8341 actccggcca cgaccgccgc gtcgtcgcat acctcaacaa gagcgacgag gtgagggaga
     8401 cgctccgccg cttcacggag cttattgact acctgctgcc gctctaccga cgcgagggca
     8461 agtcctacgt caccatcggc atcggctgca cgggcggccg ccaccgctcg gtgatgactg
     8521 ccaaccacat agcgcgacac ctgcgccgcc tcggctacga cgcgacggcc gtgcaccgcg
     8581 acgtggggaa ggccaggaag aagcccgcga agaagagggc agcggccgag gccggcgtcg
     8641 tcggcgcgaa gtgagcggga aggagaatat gcctgacaaa gccaaagacg aaccggcggc
     8701 accgcgcgtg gccggcgtca tcgtgtcgca cggccagttc gccaacgaac tgctcgccgc
     8761 cgccgagacc atcatcggcc cgatcaagca catcacggcc gtctcaatcg gctggcacga
     8821 cgacgttgac gccgccagca acgagataga gcgcgccgcc gcgcgcgtct cggagggcgg
     8881 cggcgtgctg cttttgaccg acatgttcgg aggcacgccc accaacatcg cctcgatgtt
     8941 cctgaaggac ggcgaggtcg aggtcgtcac gggcgtaaac ctgccgatgg tcataaagct
     9001 cgcgagccag cagggcggcg agccgctcgc ggacgtggcg cggctcgtgc gcgaccaggg
     9061 ccggcagggc atctacctcg cgggcgagat gctcgccggc ggcgcgagga aggcttgagg
     9121 gcggccgcga tggtcgagcg cgaggtcaga gtcgtcaacc gcctgggcct gcacgcgcgc
     9181 gccgcggcac ggctggtgcg gacggcctcg gcctacgctt gcgcgctccg catcgagcgc
     9241 gaggaccgca gcgcctccgc cgacgccaag tcaatcctga gcgtcctgat gctcgcggcc
     9301 tcgcgcggca cgcggctgcg ggtgacggcc gacggggcgg gcgagggcga ggcgctcggc
     9361 gccgtctgcg atcttatctc aagcgggttc ggggaatcgg aagagtgagc cgaaggaaga
     9421 agagggagac gcgctggggc ggcaccaccg tttctgacgg cgtggcggcg gggcgcgtgc
     9481 tgcgcgtcca cgacggcggc cgccacaaca tttaccgcgt cacgctgcgg cccgacgagg
     9541 tcgagcgcga ggtgcgccgc tacagcgcgg cggtgcgcct ctcccgccgc cagttgctcg
     9601 cgctgaagaa gcgcgcggtg cgggcgctgg gcgacgagca cgcctacata ttcgacgccc
     9661 acctcctcat gctagaggac agcaagctca acgaggacgt tgcggccatc atccgctcgg
     9721 agcgcgtcaa cgccgagtgg gccgtgaagg tcgtcaccga ccgcgtgctc gccgtctatg
     9781 aggagataaa ggacgactac ctgcgcgagc gaagctccga cgtcgaggac gtcgcgcgcc
     9841 gcctcctcgt cgccctctcc ggcgagagca tgtcgggccg caacctgaca gaagacgccg
     9901 tcatcgtcgc ggaggagttg atgccctcga caatcgccga gctcgacttc aagcacgtca
     9961 aggccgtcgt cacggacgtg ggcggctgga cttcgcacac ggcgataatc gcgcgcggct
    10021 tagggatacc ggccgtcgtg ggcttgcgcg acttctaccg aagcgcgcgc acgggcgacc
    10081 acgtgatagt tgacgcgcgc acgggcgagg ttgtcctcca ccccgagccc ccgacgctcg
    10141 aagccctgcg gctcgctggc ggcgagcgca ccggctcctc cgccgcggcg acggccgcgc
    10201 cagccgaaga gctccgcgcg ccgctgctta cgactgacgg cgtcgaggtg gttctgcggg
    10261 cgaacgtgga gcttccggtc gagcacgagt gggtcgcgcg ctacggcgcg cgcggaatag
    10321 ggctctaccg ctccgagttc ctgctcgccc accgcggcgc catgccgggc gaggaggagc
    10381 agcgcggggc ctacgaggag cttgcgcgcg tcgcgggaga cgacgggctc actgtgcgac
    10441 tgttcgacct cggcggcgac aagagcggcg gctacaggct cgaagccggc gacgagcgca
    10501 accccgcgct cggcctccgc gccatacgct tcacgctcaa gagggaaaac ctcctgcgca
    10561 cgcaggcccg cgccgtgctc cgcgccgccg cgcggggccg cgttgacctc gtgctcccga
    10621 tgatctcgga cgtgacggac gtgaggcgcg cacgacaggt gatagacgag gagcgcgcgc
    10681 gtctggaagc tgaggggctc gagtgcgggc ccgtgaagat cggggcgatg atagaagtgc
    10741 cttcggcagt cctgacggcc gagaggctcg cgcgcgaggt tgacttcttc agcctgggga
    10801 caaacgacct cgttcagtac acgctcgccg ttgaccgcgg caacgacgag gtggccgact
    10861 ggttccgctc gctccacccg gccgtgctcc agagcatcgc gcgcgtcatc acggccgcgc
    10921 gcgatgccgg catcccctcg aacgtgtgcg gagagatggc cggcacgccc gcctacgccg
    10981 tcgtgctgct cggcctgggc gcgcgcgagt tcagcatggc gccgccctcg ataccgcgcg
    11041 tgcggcgtgc ggtcgcgggt gtatcggcgc gcgacgccga gcgcgtcgcc agcgagtgcc
    11101 tgacgtgcgg gacggccgac gaggttgagg aactcgtccg ctcgcgcttc gcggagcttt
    11161 ggcccaggct tttcccgccg gaaaccttgc ctcgcctaaa aacgagagag tagaattcga
    11221 attcgggaac ggggccgttt tcgtcgtttc ttttacgcgg gggcgggctc gcccgccgcc
    11281 ctctacagcc gccaatgccc ggcggcacgg ggcgagatca ggaagagtgc ttttatgaaa
    11341 aggttctttt ttgccgtcgt cgtggcgctc gcgttctgcg ccgcgggcgc gcgcgccgct
    11401 aactggcagg cgcccggcgt gagggtcggg ccgctggccg aagaggtcgc gccggccgcc
    11461 ccgaacgggg gcgcggccaa gaaggacgag aagaaggccc ccgcgccccg cgaaattaag
    11521 ggcgaccgca aagcggccga ggccaagaag aactcggcgc cacccgagaa ggcggccgat
    11581 acgaaggcgg gcgattctaa gacggagcag cccgcgccgc tttcggcctc ggcctcgtcg
    11641 gcagtcccgc ccgccagccc ccccgccgcg actagcgacg ccccagataa gccgcgggcc
    11701 aacgccgcgc acgtcccctt cgtcaacccg tccggctcta ccgcgaagga agcagtcggc
    11761 ccagacccgg ctgctccctc tcactcgaac aacccgagca cgacgacagc cactccgtcg
    11821 gcagcgaccg cgggcccggc cggccctgcc gctcggccgg cggcgcccct cacggccgtc
    11881 tatcgaatcg gcgtcggcga cgtgctcgac atacgcacgc tcaacgagca agacccgcgg
    11941 cagtcaacgc tattcaccgt gctcgcgggc ggcgtactcg actacccgct actgcccgac
    12001 cccctgaccg tcgcggggat gacgaccgag gagctttcgg cgcagctcgt cgccgagttc
    12061 cggcaccgaa acatttacga ccgcccgcag gttcgcgtaa gcgtccgcga gtacgcgagc
    12121 cacgccgtcc tcgtgagcgg gctcgccaac gacccaggca cgaagattct gaggcgcgag
    12181 gccgtcccgc tctacgtagt catcgccgag gcccagccaa agccagaggc cggccgcgcc
    12241 gtcgtcatat cgcactcgac gggcaagacc acctccgttg acctgagcga cgccgccgcc
    12301 ctcaacatgc tcgtgcagca gggcgacgtg ataaacctta cggcgcgccc gcccgagttc
    12361 ttctacgcgg gcggcgagat agcgtcgccg ggccagaaag atttccacgc cgggatgacg
    12421 ctcacgcagg ggctgctcgc gtcgggcggc gtgacgcgct tctcgtcggg ccgcgtccgc
    12481 gtctcgcgcc aggggccgga cggccgcctc gtctcgaccg agtacaactt gaaggagata
    12541 gaggacggcc gcgcccccga cccgcccttg caggccggcg accgcgtcga ggtgacgcgt
    12601 aagaagtagg catcggcgcc cccggcgcgg agcgccgcct tcttctcttg tccggcacag
    12661 ccgtgaggct gtattatccc gtccgtccga gcccaagttt cgcgcgacgg tctcgtcgcc
    12721 ccggcccgtc cctgtgccgg ccgataacgt ataagacatc aaaaccaaac cgcaccttcc
    12781 tgtcggagga taaaactttg agtaagtgga accgcatcgg cgcggccgcg ctgtccgccg
    12841 cgctactgtt cgcccccttg accgccttcg ccgcccccgc ccgcgccctc gcggcgcagc
    12901 gccaggacga caccccaacg gacgccgagc aggcggtctt caatcgcggg cgcgacctct
    12961 tctccaaagg ccagtacgag caggcggccg cggtctttcg cgacttcctc aagagtaacc
    13021 ccgacagcta cgtggccgac ctgatgctgc tgtggctcgg ccgctcctac atagagctcg
    13081 gcaagctgcg cgaggccgag gaggtcgccc agcgcctgcg cgccatgcag gacacgccgt
    13141 tcgcggacat ctaccagagc gagctggaga acgcgcagcg cgaggccgcg acgaggcccg
    13201 cgcccgccgc gcgcccgacg cccacgccgc gccccgtcga ggttgcgcgt gcgacgccta
    13261 cgcccgcccc cgctcgcaac aacgccaaca cgcggccgcc cgccaacacc aacctcccgc
    13321 aatcgcgcga gatcgcgcgc gccgcgacga acacgaactc caacacgccg acgctgacga
    13381 tacgcggggg cggcgacgcc acgcgcccgc gcaacgcagg ccgccagtca cggcgggcca
    13441 cgcagcccgc cacgaccgcg gccactcccg tagcgacgcc gacgccgcgc ccggtcgagg
    13501 tggcgcgcgc taccccgact cccgcgccct cgcgcagaga gactgccgcc tccaccgccg
    13561 cggccgcgcg cccgtcgccg ccgccgacac cgacaccgac gcccgtgcgc gtcgccgagg
    13621 tgcgcgagca gccttcagcg atgacggccg tcacctccgc cgggccggat acgacgcagc
    13681 cgcagggcgg cttcagcatc accgtcaagc aggtgcctaa cctgcaactc gcgctccggc
    13741 gcgccgcgct cgccgcgcag ccggggcagg cgatacaact cccgctcatc ataactaaca
    13801 ccggcaacaa ggaggatcag ttccgcctgg agaccgacct accggccgag taccagccga
    13861 cgttcagcca gagcggcgca ggcaccgaca tgcccatctt cgtcacgccg cagatggctc
    13921 gcggcgctaa ccttgaagtc acgctcaacc tgcgcgtccc cgacaacgcg cccgacaacc
    13981 agcagcagcg cttcctcgtc cgcgcctcgt cgcaggccga ctcgaccgtg gcgaaagtct
    14041 cggacgcctc gctgaccgtg gtagccgccg cgctcgcggc cgcgtcgaac gcgcttcagg
    14101 agtcggtcat gcccggcgat acgttcacgc agcgcataag cgtccgcaac caggggagcg
    14161 ccaccgcgcg cggcacccgc gccgacttcg tcttcaacca ggacttcgag ctggtgagcg
    14221 ccacgccagc gccgattaac tacgaccgcc cgtcgcgcac cgccatctgg tcgctcggag
    14281 agctcgactc gcgggacaac cgcgagataa cggtcacgct gcgcgcagtc cccgaggcgc
    14341 tcgccggccc caacaagccg gtcggccgcg gcacgatgcg cacgcagagc ctcgtcatcc
    14401 cgtcgaactt cgacgggccg accatatccg tcgggcgcgt cgcgcgcgcg caggttgact
    14461 cggtctcctc gggcctaacg gccacgcccg gcgacaccat cttcgtaccc ttcatcgtcc
    14521 gcaacccgtc gaactacccc gaagccttcg agatgcgcat cactgcgccg ggcgccccgc
    14581 ccgcgaccgt ctatgccgac ctgaacggcg acggccgcca ccaggacgga gagccggcgg
    14641 tgacgcagac ctcctcgctc gacccgcgcg gcgggcagtt ccccgtcctt ctgcgcgtgg
    14701 acataccgcg ctcgacgccg gacggccagc agttcgccta caacctcgtc acgcgcgccc
    14761 tgagcgcgac ggggcgggtg gcgagcgagg ccaacaccgt tctcagggtc gcgacgccgc
    14821 gcgtgcgcgt gcgcgccgag ctaggcaact cgcagccggc gccgggcgaa acgatcttct
    14881 accgccttgt gctcgtgaac gacggcggcg ggctcgcgag gaacctcgcc gtcaccgagt
    14941 acctgccgga cgcgctcgag ttcgtgtcga gctcgcccga gcttagcctg caagacatgc
    15001 cgggcggggc gcgcggcttc gtgtggcggc tgaacgagct cgcgccgggc gacacggccg
    15061 tgctgctcgt aacggtacgc ctgcggcaga acctgccggc cgacgccgtc attacgccgc
    15121 gccacacgct caccttccag gacagcaacg gcaacggcta ccacgggcaa tgagcgaggc
    15181 cgcggcccgc gagcttgagg gcgcggaggg caaccccgga gaggggactg ccccccgcgc
    15241 ccctcttcac atgagcgaaa gccagcccgc ccctgcgtct ccgcgggcag agacggccgc
    15301 gctcacgccc gccgcggcgc ggcgcgtcac gacgctcgtc atcgcgaagg gcgcgctcga
    15361 cctgctcttc gtctccgcgc tcgccgtggg cttcagctat ttcgccttcc accctcactt
    15421 ccgcggctcg ctcgaccacg ccgacgcgcg cagcgtccgc ggctgggtcg ttgaccgcgc
    15481 gcggcccgag cgccccgtcg aggttcaact ctacgttgac ggccgcttcg tcgcggccgc
    15541 gctggccgac cggccgcgcc ccgacgttca cgcccgcggc tacgcgcccg acgagcgcca
    15601 cggcttcgtc ttcgacttcg gcgactcttt gcagggcggc ggcgagcacg aggcgagggt
    15661 atatgccgtc cactcgtccg acgacggcga gcgccgcacg ctccaactcg tcggccgccc
    15721 gctccgcttc ggcgcggggc cggggcgttg acgacgacga tgctgccttc aaaccggcaa
    15781 tctgtaatca gcaatcagca acccggcgca cgcgcgctcg cggcgtggga gatcatctcc
    15841 gtcgtctcct ccgtcgtgat agccgagtgg gtcgtcttcg cggtggcggg cgacagcgcc
    15901 ccggcgctcg cgttccccgt cgggagcgtg ctcgtcttca tgttcctctc gcaccgcgcg
    15961 cgcggcgaga cggcgcgcga agtgggctgg cgcatggaca acttcggaag ggcggcgaag
    16021 ttgcttctcc cgccgatgat cgttttgagc gtcccgcttc tcgccttcgg ctggctcgcg
    16081 ggcaacctcg acctcacgcg ctggcgcggg gggcagacca tcctcggcac gcccgcgcta
    16141 ggggcgctct ggggcttcct acagcagtac gcccttcaag gcttcatcaa ccgccgcgcg
    16201 cagttgcttt gggggccggg ccggaagagc gtgttgctcg tcgcaatagt cttcgccctc
    16261 ctgcacctgc cgaacccgtg gctcacggcc gcgacgttcg ccgccggcct cctctgggcc
    16321 tacacttacc agagggcgcc caacctcttc gcgctcggcc tctcgcacgc ggcgatgacc
    16381 tgggtgctcg tctcggccgt cccgccgcag gcgcttcaca atttgcgagt aggctttaag
    16441 tttttccgct gaaagcagta gcggcgcggc ctaaatcatc taagtttgaa cagcgaacac
    16501 ctttgggctg tacgtgttca acggtggttt gctataatcc gcgcgccgcg ctaattgaga
    16561 gcaggtcggg cggtcgctgc cgcaagccct ttacggggcg agcgggagag gaaagtccga
    16621 acaccaaagg gcagcgagcc agctaacggc tgggcgccgg gcgccgacgg ggctcgtgag
    16681 aacgggccga ccgggcgcag cggcgacgac aagtgcaaca gaaaacagac cagccagcgg
    16741 gcctctcttt tcggaggggg gcggcgggtg atgggtgaaa tggtgcggcc cctcgagggc
    16801 ttaaagtaag agcgcaccgg cgcgcgtggc gacacgcgcg gccaggcaaa ctcctcgcgg
    16861 tgcaagacca aatagggagg cgggcaaagg gcggcccgtc cgagagcgcg ctcttttgag
    16921 ggcgcgcgac gcctccgggt aggtcgcttg agccgtgcgg cgacgcacgg cctagatgaa
    16981 tgatcgccac cctcgcgcgc gcccgcgcgc gacgggggga cagaattcgg cttacagacc
    17041 tgttctcaat tagcgcggca ctaatcccag tgccggcacg gctccagacc tcacaaaacg
    17101 atgtcccatc tctcacccca ggagaaacag agcatggcga accgtaaagg cgtcttcata
    17161 ggcgcttacg tccccgccga gctgaagaag gcacttcagc agcgcgccgt cagcgaacat
    17221 cgcacgctct cgcaggagat aacacgcata ctcgaagagg ccgtcaaagg cccgaggctt
    17281 cccccgaact tcgtggagag gcgcgcgccc ggctcaggcc cccgccgccg caactccgac
    17341 ccgctcccgc gccgacgcaa agacgacctg ccctacaacc ccgaagggca gggctccggc
    17401 gaggggtgag cacggcttta gagtaggatg gccgaacaga agctcgccag caagagggag
    17461 gtaatcgtgc tcgccgcggg gctcatcgtg ggcttcgtcg cggggttcgc gctggcgaac
    17521 ggggttaacc gcggtgagca cgaccgcctg cgcgccgagc tgacccgcct gcgctcgggc
    17581 ggcgccggct cgggcaccga acccggccgc ccggccgcgg ccgcagactc cggcgacgcc
    17641 accgtcatcc ccgacctcac gcaggagcag ctcaggaagg ccgtcgccga cgccgacgcg
    17701 cgccccggcg acctggagct tcagcgcacc gcggggcagg gcctctacct ctacgcgatg
    17761 cagaagggcg acgcctccat cctgccggac gccgcgcgca tactccgccg cgcgcacgac
    17821 gcagacccga aggactacca gctcgccgtc atagccgcga acgcacactt cgtcgtcgcg
    17881 cgcagcggcg gcgactccgc ggcgctcaag tccgcgcgcg agctttacga ggccgcgctc
    17941 gccgagaagc cggacgacgt gatcgcgcgc acgagcctcg gcctcacata cttctacgac
    18001 cgcccgccgg acgtgcgccg cgccgtgcgc gagtaccgcc gcgccctcga agtcaacccg
    18061 cgccacgaga tgactttgca gagcctcgcg gccgcgctcg tagaggcggg cgagctcgaa
    18121 gaggcggcgc gcaggctctc ggagcttgag tcggtgaacg ccgagaactc ggagcttgcg
    18181 aacctgcgcg cacagctcga acagaagcgc aacgccgcga gggagaagcc ttgatgaagt
    18241 acctgctggt tcttggcctc ctcgcgctcg tcgtcgggct tatctactgg cggctgcgcc
    18301 cgtatataca gatggtgcgg cgcttcctcg gcgcagtccg cgaggccaac cgtgtgcgcg
    18361 aggcggcgcg cggcgacctg ccgcgccagc ccacgcggcg cgcctcgcat gccgacaggc
    18421 tcgtgcgctg cgcctcgtgc gggacctggc tgcccgcgtc gcgcgccgtg cgcctcggct
    18481 ccgccaacac gaccttctgc tcgcacgcgt gcctcgaacg ctcggccgac gccccgcgca
    18541 aggcgcgcaa gtccgcctcc tgaaacctca ccgacagcga aactgttatc gggcctcggc
    18601 ctcttcgggg agggcgttgc cggcctcgcg tatggcgcgg tcggtgtctg tgagggagag
    18661 gactatcgtc ccggcgacga agaagacgat tagcgagagc agcgcgtagc ggaacgagcc
    18721 ggtgcgcgcc accacgacgc tgaagacgag cgggccgagc caggaggtgc cgcgctctga
    18781 gacttcgtag atgccgaaga aggatgcctc gcgcccctcg ggtatcatgc gcgagaagag
    18841 cgagcgcgag agcgcctgcg acccgcccag gacgaccgcg atgaaggcgg ccatcaccca
    18901 cgcctgccgc ctcgtctcga agagcgcgaa cgcgtagatg acgatgccgg cccagatgac
    18961 gagcgataag agtatcgccc gcttcgtccc cgtcaggcgc gcgacgcgtt cgaagagcag
    19021 cgccccgccg atgcccatga actgaacgaa gaggaagatg ctgagcacga aggccggggc
    19081 gtcggggttg tcgagccccc ccgcgaacag ctcggccgcg atgaagacgg ccgccgagcc
    19141 gatgacggtc tgtatgccgt cgttgtagag caggtaggcg acgaggtact tgagcgtgtg
    19201 cgggagccgt cgcagctctc ggaaggtctc cgttagctgc gagaagccga cggtcaggta
    19261 gttcttgccg ggcggcagtt gcctcgccgg agcgcgctgc ctcagccgcc tgaacgcgag
    19321 gaaggcgaag aagccccacc acactccggc cgaaagaagc gacagtcgga ctgccaggcc
    19381 gctcgcctcg ccctccgtgt agccgtaggg cgcgagcaga cgcggcgcga ctccgaccat
    19441 gccgaagttg acggcgagca gaaggccgcc gcccaggtag ccgagcgcga agccgcggct
    19501 cgaaaccttg tcgcgctgat cctcggtcgt aatctccgga aggaaagagt tgtagaggac
    19561 gacggcgccg ccgaagcaga ggttggcgac gacgaagagc acgccgccaa gaatgtatag
    19621 cttccccgtc acgaagaaca gaaggcacgt ggccgccacg cccgtgtagc agaaggcggc
    19681 catcaaacgc ttcttcatgt gcgaatagtc cgcgacggcg ccgactacgg ggagcagcag
    19741 gacttgcgag cctacggcga cggcgacgaa gagctggtag aaggactgcg ccgtcactga
    19801 gccgagcggg ccgaggtcga gcac
//
LOCUS       DASPKR010000289         4177 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_296334, whole genome shotgun sequence.
ACCESSION   DASPKR010000289 DASPKR010000000
VERSION     DASPKR010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4177)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4177
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296334"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(218..544)
                     /locus_tag="VD968_08045"
     CDS             complement(218..544)
                     /locus_tag="VD968_08045"
                     /inference="COORDINATES: protein motif:HMM:NF020908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1992 domain-containing protein"
                     /protein_id="HYE14374.1"
                     /translation="MFDKLVEQKIREAMRAGEFDRLEGEGRPVNLEAYFSTPEELRAG
                     YAVLKNAGVLPEEATLRKEIDALRSALGSASAPEERARLRRQIDDLTLKYSLLVERQR
                     GPRRPE"
     gene            complement(578..2023)
                     /locus_tag="VD968_08050"
     CDS             complement(578..2023)
                     /locus_tag="VD968_08050"
                     /inference="COORDINATES: protein motif:HMM:TIGR00797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HYE14375.1"
                     /translation="MPDSTETAETPPAEAQGPGLLGAVWQAVRGTSPRYDYTEGPIGR
                     AIFLLAIPMVLEMLMESVFAVADVFFVSRLGEDAVATVGLTESMLTIIYTLAIGLGIG
                     ATAMVARRIGEHDPEGAARAAAQTLALGVIVSVVLGVAGVVLAPRLLALMGATPGVIE
                     TGSNFTRVMLGCNASVVMLFLLNAVFRGAGDAAIAMRVLWLGNAINIALGPCLIFGLG
                     PFPEMGVTGAAVATTIGRGTGALYAFSRLVRPGGRVRLARRHFRVEPDVMLRLVRLSG
                     SATFQVFIGMASWIGLTRLVASFGSEAVAGNTIGFRIIMFALLPSWGMSNAAATLVGQ
                     SLGAGKPERAERAVWAAGFYNMCFLGVVGLLFILFADQIVGLFTHAAGAGAHRYGVEC
                     LRIVACGFLFYAYGMVLTQSFNGAGDTWTPTVINLFVFWLWELPLAYFLSFTLGMGPR
                     GNFLAATIAFSTLAVVSAYVFRKGKWKTRVV"
     gene            complement(2220..3257)
                     /locus_tag="VD968_08055"
     CDS             complement(2220..3257)
                     /locus_tag="VD968_08055"
                     /inference="COORDINATES: protein motif:HMM:NF013087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008171 - O-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HYE14376.1"
                     /translation="METEENTQQVQDVPPAVALTQMVSGYWVSQAIYVAARLGVADLL
                     AGGPKHVVELAGACGADEAALYRVMRMLAGVGVFARDAEGRFRLTPLSEPLRTGPGSA
                     RSMAIHMVEGPSWRAWGELLHTVRTGETAFAHANGSEVFPFYAAHPESAEPFNQAMTE
                     MSAATAEAVVRAYDFGGMKRVVDVGGGHGQLLAAILKANPHLSGVVFDQPEVADAARE
                     RLAAEGLGGRCEAEGGDFFESVPEGGDAYLLKWIIHDWDDRRAGVILKNIHRAMHESG
                     RLLLVEAVVPEGDGPSFSKHMDVHMMIMTGGRERTESEYARLYADAGFRLTRVIPTES
                     MMSIVEGVKIG"
     gene            3407..4117
                     /gene="msrA"
                     /locus_tag="VD968_08060"
     CDS             3407..4117
                     /gene="msrA"
                     /locus_tag="VD968_08060"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR00401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HYE14377.1"
                     /translation="MSNTAKEVATLGAGCFWCVEAVFKELRGVESVVSGYSGGETASP
                     TYEQVCTGTTGHAEVVQVTFDPSVVSFAEILEVFFSVHDPTTLNRQGADVGTQYRSAV
                     FYHSPEQKETAERLIAGLDAAGALGAPVVTEVTPFREFYPAEDYHQDYFKNNPSQGYC
                     RVVVAPKVSKFRKKFAAKLAAAGAQPRDDVNRALGVGQGHAPGHGQNVEVKYSGPDGV
                     MIDVSQTGWVGTSPLVRE"
BASE COUNT          691 a         1438 c         1398 g          650 t
ORIGIN      
        1 tcggagctgt tcaccagcgc cgcccccgcc tgctgcgcgc cagtcgggcc cgtgtttgaa
       61 ctgaccatgt ccattgccag ccgactcatc actaacaccg ccgagttagt tgcacagccc
      121 ggcggaaggt ttcagaaaaa tgtggccgaa aagggcacaa aaacggggcg cgggctaagg
      181 ccgcgccctg aaccggcgct cgggcctgtt ttttgggcta ttccgggcgg cgggggccgc
      241 gctggcgctc gacgaggagg ctgtacttga gcgtgaggtc gtcaatctgc cgcctgaggc
      301 gggcgcgctc ctccggggcg ctcgccgagc cgagcgcgga gcgcaacgcg tcaatctcct
      361 tccgcagggt ggcctcttcg ggcagcacgc ccgcgttctt caaaacggcg tagccggcgc
      421 gcagctcctc cggggtcgag aagtatgctt cgaggttgac ggggcggccc tcgccttcga
      481 gccggtcgaa ctcgccggcg cgcatcgcct cgcgtatctt ctgctcaact agcttgtcga
      541 acaccgacgc tcccctccct tgaggatttc ccggccatca taccacgcgc gttttccact
      601 ttcctttacg gaagacgtag gcgctcacga ccgccagagt cgagaaggct atggtcgcgg
      661 cgaggaagtt gccgcgcggc cccatcccca gcgtgaacga gaggaagtag gcgagcggca
      721 gctcccacag ccagaagacg aagaggttta tgacggtggg cgtccaggtg tcgcccgcgc
      781 cgttgaacga ctgcgtgagc accatcccgt aggcgtagaa gaggaagccg cacgcgacta
      841 tgcgcaggca ctcgacgccg tatcggtgcg cgcccgcgcc cgcggcgtgc gtgaagaggc
      901 cgactatctg gtcggcgaag aggatgaaga gcagcccgac gacgccgagg aagcacatgt
      961 tgtagaagcc cgccgcccag acggcgcgct cggcccgctc gggcttgccg gccccgagcg
     1021 actgcccgac gagcgtcgcc gccgcgttgc tcatccccca cgaaggcaag agcgcgaaca
     1081 tgatgatgcg gaagcctatg gtgttgccgg ccacggcctc gctcccgaag ctcgcgacga
     1141 ggcgcgtcag gcctatccag ctcgccatgc ctatgaagac ctggaaggtc gccgagcccg
     1201 agaggcgcac gagcctgagc atcacgtcgg gctcgacgcg gaagtgcctg cgggcgaggc
     1261 ggactcgccc gcccggcctt acgagccgcg agaaggcgta gagcgcaccg gtgccgcggc
     1321 cgatggtcgt ggcgacggcc gcgcccgtca cgcccatctc agggaagggg ccgaggccga
     1381 atatcaggca cgggcctaga gcgatgttga tggcgttgcc gagccacagc acgcgcatcg
     1441 ctatcgctgc gtcgcccgcg ccgcggaaga cggcgtttaa gaggaacagc atcacgaccg
     1501 aggcgttgca gccgagcatg acgcgcgtga agttgctgcc cgtctctatg acgccgggcg
     1561 tcgcccccat gagcgccagc aggcgcggcg cgagcacgac gcccgccacg ccgagcacga
     1621 cggagacgat gacgccgagc gcgagcgtct gcgccgcggc gcgtgcggcg ccttcggggt
     1681 cgtgctcgcc tatgcggcgc gcgaccatcg ccgtcgcccc tatgccgagg ccgatggcga
     1741 gcgtgtagat gatagtgagc atggactcgg tgaggccgac ggtggcgacc gcgtcctcgc
     1801 ccagtcggct gacgaagaaa acgtcggcga cggcgaagac gctctccatg agcatctcca
     1861 gaaccatcgg gattgcgagc aggaagatgg cgcggccgat ggggccttcc gtgtagtcgt
     1921 agcgcggcga ggtgccgcgc acggcctgcc agacggcgcc gagcaggccc ggcccttgcg
     1981 cctccgcggg cggagtctca gcggtctcag tcgagtcagg cattattcgt ctcagtcaaa
     2041 cggcaaggcg aagggcgagg ccgagcgggc aaaatagcgc gcgcaccctt atacgctcaa
     2101 accgccgggc ggtttcgcgc tcagcaggca tggcgagcgg gctcgggcag cgccggcttt
     2161 taagcgccgg cgctgcccga gcccgcgagt ctttcagtcc gccgtgctga caatctgcct
     2221 cagccgattt tcacgccctc gacgatgctc atcattgatt cggtcgggat gacgcgggtg
     2281 aggcggaagc ctgcgtcggc gtagaggcgc gcgtactccg attcggtgcg ctcgcgcccg
     2341 cccgtcatta tcatcatgtg gacgtccatg tgcttcgaga acgaggggcc gtcgccctcg
     2401 gggacgaccg cctcgaccag gaggagtcgg ccgctttcgt gcatcgcgcg gtggatgttc
     2461 ttgagaatca cgccggcacg gcggtcgtcc cagtcgtgta tgatccactt gagcaggtag
     2521 gcgtcgccgc cttcaggcac cgactcgaag aagtcgccgc cctcggcctc gcagcgcccg
     2581 cccaggccct ccgcggcgag gcgctcccgc gccgcgtcgg ccacctccgg ctggtcgaag
     2641 actacgcccg acaggtgcgg gttggccttc agtatcgccg cgagcagttg gccgtggccg
     2701 ccgcccacgt caaccaccct tttcatcccg ccgaagtcgt aggccctgac gacggcctcg
     2761 gccgtggccg cggacatctc cgtcatggcc tggttgaagg gctcggccga ctcggggtgc
     2821 gcggcgtaga aggggaagac ctcgctgccg ttggcgtgcg caaacgcggt ctcgcccgtg
     2881 cggactgtgt ggagcagctc gccccacgcc ctccacgaag gcccctcgac catgtgaatc
     2941 gccatgctgc gcgccgagcc cggccccgtg cggagcggct cgctcaaagg cgtcaaccgg
     3001 aaccgtcctt cggcgtcgcg cgcgaagacg cccacgcccg cgagcatcct catgaccctg
     3061 tagagcgctg cctcgtccgc gccgcacgcg cccgcgagct cgacgacgtg cttcggcccc
     3121 ccggcgagca agtccgccac gccgagccgt gccgccacgt agatcgcctg cgacacccag
     3181 tagccgctca ccatctgcgt gagcgccacg gcaggcggca catcctgaac ctgttgcgta
     3241 ttctcttccg tttccataat caccgttgac atatcccccc gtccaaaaag tttttccgcc
     3301 cgccaatgac ctaacgcgag aaactcggcc gggccgagtc agcgggccgt gacttttttt
     3361 gcgaggcgtt tgacgctcgg ccccgcgttg cgtcatcctt ccgcgcatga gcaacacggc
     3421 gaaggaagtg gcgactctcg gggcgggctg tttctggtgc gtcgaggcgg tgttcaagga
     3481 gctgaggggc gtcgagtcgg tcgtctccgg ctactccggc ggcgagacgg cgtcgcccac
     3541 ctacgagcag gtctgcacgg ggacgacggg ccacgcggag gtcgtgcagg tcaccttcga
     3601 cccgtcggtg gtctccttcg ccgaaatcct cgaagtcttc ttcagcgtcc acgaccctac
     3661 gaccctcaac cggcagggcg cagacgtcgg cacacaatac cgctccgccg tcttttatca
     3721 ctctccggaa cagaaggaga cggccgagcg tctaatcgcc gggcttgacg cggccggcgc
     3781 cctcggcgcg cccgtcgtca cggaggtcac gcccttccgc gagttctacc cggccgagga
     3841 ttatcaccag gactacttca aaaacaaccc ttcgcagggg tactgccgtg tcgtcgtggc
     3901 gccgaaggtc tcgaagttcc gcaagaaatt cgccgcgaag ctggccgccg ccggtgcgca
     3961 gccgcgcgac gacgtgaacc gggcgctcgg cgtcggccag ggccacgcgc cgggccacgg
     4021 ccagaatgtc gaggtgaagt acagcggccc ggacggcgtg atgatcgacg tgtcgcagac
     4081 cggctgggtc ggtacctcgc cgttggtgcg cgagtagcgc ctcggccgcc ccgaagctgg
     4141 ccgtgcaccc acacggcccc gccggacagc catccgg
//
LOCUS       DASPKR010000290         5877 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_38032, whole genome shotgun sequence.
ACCESSION   DASPKR010000290 DASPKR010000000
VERSION     DASPKR010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5877)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5877
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38032"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /locus_tag="VD968_08065"
     CDS             complement(<1..279)
                     /locus_tag="VD968_08065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14378.1"
                     /translation="MFEQMPAPKPWYRSWQGLLFAGGGVAAALLVVLLIYLIGSREDP
                     NTEAHYAALERHRAEQQKQAPPADPALAQTAEQQPAGEQQPVQGEQAAA"
     gene            complement(381..1724)
                     /locus_tag="VD968_08070"
     CDS             complement(381..1724)
                     /locus_tag="VD968_08070"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE14379.1"
                     /translation="MRPSRRIARALLAFLLTCAAFSAASAGDWPQWRGPGGAGISDEK
                     DLPEEWSDTKNVRWKTPIPGRGHSSPIVWGKRVFLTTAVEGPVVPGAKAAVHLIEGKE
                     WKHPDSVGADRKHAFKVIALDRDTGKILWEQTAWEGTPYDDRHRKSSYAASTPATDGK
                     MVYAFFGAEGLYAYDYSGKLAWKYDAGKIGTVGMGAGISPVLYENLVIVQADEENGEK
                     SFIVGLDKKTGKEVWKTPRKVQVSWGTPILVNTGKRTELVTNGTEFIISYDPATGKEL
                     WRTKGVESNAIPSPVATASRDMVIVSAGYPVKTAFAIRLGASGELKDADIAWRYSKGT
                     AYVPSPILYGDYLYLMTDKGMITCLDAKTGEVKYEGGRVPVPATFTASPVAFDGRILL
                     TSEDGDTFFIKAGPKHEVIRTNSLAEPVYASPAIADGKIFIRGEKHLYAIAKPGK"
     gene            2116..4347
                     /locus_tag="VD968_08075"
     CDS             2116..4347
                     /locus_tag="VD968_08075"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE14380.1"
                     /translation="MRATVSSARALLAALPLLLAPAPSRAADWAEWRGPERDGVSHEK
                     NLPSKWSPAGENLAWRAPFGGRSTPVVVGDRLYLQNAAGKGAEMQERVMALDANTGRV
                     IWEHKFNVYLSDAPPHRIGWASPAADPSTGNVYAHGGGGTVLALSKDGKVLWERSLGE
                     DFGWLTTHGGRTMSPVIDGDLLIITGVAFSWGSQHRGMHRMIAFDKLTGEVVWTSAPG
                     GRPYDTTYAPPIIADVAGTRLLIQGGADGMAYAVKPQTGEPVWRAHVSQRGINTGVVV
                     KGTTAILTHSEENLEGSEMGMIAAVDATSKGDIKKEQYKWSRLGWQGGFSTPVLDGDR
                     LYQVDNGANLGAFDVATGKQLWLQNLGTIQKASPVLADGKLYVGTENGKFFIIEPSAT
                     GAKILDEDQLGTEAQPEAIIASVAVSNGRIFLVTDTATYCIGKKHSAKSSAASFEKLT
                     LVVSSQRPQNLTNAAVAHVQVVPADVMIRPGESVRFRVRLFDERGNLIREEKGATWSL
                     DKLDGKAEANQFTATAGATAAQAGEVRATVAGVTGAARVRVVPPLPWSENFDSSEVNT
                     FPQHWTNTGMKYIVREVEGSKALVKTVEGSSLLTRARAYMGLSDLHDYTVEADVRATE
                     KRRQLGDAGVIAQRYALVLFGNSQKLEISPWQPETARVASVPFAWKPDTWYRLKLRVE
                     NLPGGRVRAQGKAWPAGEAEPAAWMVERVDPIGNRQGSPGIFGSALTAEIFFDNLKVY
                     PNK"
     gene            4372..5406
                     /locus_tag="VD968_08080"
     CDS             4372..5406
                     /locus_tag="VD968_08080"
                     /inference="COORDINATES: protein motif:HMM:NF013087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008171 - O-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HYE14381.1"
                     /translation="MTNEANTQAPQHEGPTPERIFQALTAYQATAALKAAIELDIFTA
                     IAEGATTAAEIAERCGAAERGARILCDYLTVGQFLTKQGGRYGLTPDTELFLTRRSPA
                     YLGGMVEFLCGPHLVGAFQANFTESVRKGGTAMPEQGSMTPEHPMWEDFARSMAAMMH
                     MPAEAIAGIVGAEGMETCKVLDIAAGHGVFGVALARHNPRAEVYAVDWQNVLPFARRT
                     AEAAGVAERFHEIPGSAFDVEFGDGYDLALLTNCFHHFDKPTCVALMRKVHSALKPGG
                     RAVTLEFVPDEDRVTPPAEAAFALIMLGTTPSGDAYTFGEFDAMFREAGFARSEIIAV
                     PPQHVIVSYK"
     gene            5430..>5877
                     /locus_tag="VD968_08085"
     CDS             5430..>5877
                     /locus_tag="VD968_08085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14382.1"
                     /translation="MRFRNNATRLALAAALVSAFCLLPSAFPVSDPGTGDWPMWGGTP
                     DRNMVTKAKGLPASWDVKTRKNVKWVADLGSQTYGNITVSSGVVFVGTNNEGKRDPKI
                     TGDKGVLMAFDEKTGAFLWQAVHDKLAAGRVNDWPFQGIASSPLVEG"
BASE COUNT          998 a         1958 c         1967 g          954 t
ORIGIN      
        1 ggccgccgcc tgctctccct gcaccggctg ctgctcgccc gcgggctgct gctcggccgt
       61 ctgcgccaga gcggggtcgg cgggcggggc ctgcttctgc tgctcggcgc ggtggcgttc
      121 gagcgcggcg tagtgcgctt cggtgttggg gtcttcgcgc gagcctatga ggtatatgag
      181 cagtacgacg agcagcgcgg cggcgacccc gcccccggcg aagagcagcc cctgccacga
      241 gcgataccat ggcttcggcg cgggcatctg ttcgaacatg cgttttactc ctgtcggaaa
      301 agggaaggga gggcgagcgc ccgccctcca cttttagacg cgccgggggc gcgggttgtt
      361 ccctcaactt cggcccgcgc tcacttgccc ggcttcgcta tcgcgtacag gtgcttctcg
      421 ccgcggatga aaatcttgcc gtctgctatc gcgggcgagg catagacggg ctcggcgagc
      481 gagttcgtgc ggataacttc gtgcttgggg cctgccttga tgaagaaggt gtcgccgtcc
      541 tcgctcgtca gcagaatcct gccgtcgaag gcgacgggcg aggccgtgaa ggtggccggg
      601 acggggacgc gcccgccctc gtacttgacc tcgccggtct tggcgtcgag gcaggttatc
      661 atgcccttgt cggtcataag gtagaggtag tcgccgtaga ggatcggcga aggcacgtag
      721 gcagtcccct tcgagtagcg ccacgcgatg tcggcgtcct tcaattcgcc gctcgcgcct
      781 aagcggatgg cgaaggccgt ctttacgggg tagccggccg agacgatgac catgtcgcgc
      841 gaggccgtgg ccacgggcga ggggatggcg ttgctctcca cccccttcgt gcgccagagc
      901 tccttacccg tcgccgggtc gtaggagatt atgaactcgg tgccgttcgt cacgagctcg
      961 gtgcgcttgc cggtgttgac gagaatcggc gtcccccagc tcacctgaac cttgcgcggc
     1021 gtcttccaga cttccttacc cgtcttcttg tcgaggccga cgatgaaaga cttctcgccg
     1081 ttctcctcgt cggcctgcac gatgacgagg ttctcgtaga ggacgggcga gatgcctgcg
     1141 cccatcccga ctgtgccgat cttcccggcg tcgtacttcc acgcgagctt gcccgagtag
     1201 tcgtatgcgt agagcccttc ggcgccgaag aaggcataga ccatcttgcc gtcagtcgcg
     1261 ggcgtcgagg ccgcgtagga gctcttgcgg tggcggtcgt cgtagggcgt tccctcccag
     1321 gccgtctgct cccatagaat cttgccggtg tcgcggtcga gcgcgatgac tttgaaggcg
     1381 tgcttgcggt ctgcgccgac gctgtccggg tgcttccact ccttgccctc gatcaggtga
     1441 acggcggcct tcgcgcccgg cacgaccggc ccctccaccg ccgtcgtcag gaagactcgc
     1501 ttgccccata caatcgggct cgaatggccg cggcccggta tgggagtctt ccaacgcacg
     1561 ttcttcgtgt cgctccactc ctcgggcaag tccttctcgt ccgagatgcc ggcgccgccg
     1621 gggccgcgcc actgcggcca gtccccggcg gacgcggcgg agaaggccgc gcaggtgagc
     1681 aggaaggcga gtaaggcgcg ggcgattctt cttgacggtc tcactgttcg ggttcccttc
     1741 gggttaaaga attttgcctg gcggccctcg tcgtcggcgc ggcgcggcca cacgaccgcc
     1801 cgcgcccgaa aatttagacc gccgtccaca atttggtatg cttgaagagt tcgccacgcg
     1861 tctaaaaaca agtgcgggcg cgggggcgta tttataaccc ggcgcgtgcg gaaagcaaga
     1921 taaatcttta gcggccgccg cggccggggg attctacaac gcgttgaaac gtaagcgggc
     1981 gcgcgcgggt ttctttttac acgattttta caacaaacgc ggcccgagtc gtcataatag
     2041 ctcgttaaat tcatggcggg gcttcccgca atccgacccg aagaaatcaa agtgcaaacc
     2101 cgaggactgc atgcaatgag agcaaccgtc tcaagcgcgc gcgcactact cgccgcgctc
     2161 cccctcctgc tcgcccccgc gccctcgcgc gccgccgact gggccgagtg gcgcggcccc
     2221 gagcgcgacg gcgtctcgca cgaaaagaac ctgccgtcga agtggtcgcc ggccggtgag
     2281 aacctcgcgt ggcgcgcgcc cttcggcggg cgctccaccc ccgtggtcgt gggcgaccgc
     2341 ctttacttgc agaacgccgc gggcaagggc gccgagatgc aggagcgcgt gatggcgctc
     2401 gacgccaaca cgggcagggt catttgggag cacaagttca acgtctatct ctcggacgcc
     2461 ccgccgcacc gcatcggctg ggcttcgccg gccgcagacc cctcgacggg gaacgtttat
     2521 gcgcacggcg gcggcggcac tgtgctcgcg ctctcgaagg acggaaaggt cttgtgggag
     2581 cgctcgctcg gcgaggactt cgggtggctg acgacgcacg gcgggcgcac catgtctccc
     2641 gtaattgacg gcgacctgct catcatcacc ggcgtcgcct tcagttgggg aagccagcac
     2701 cgcggcatgc accgcatgat cgccttcgac aagctcactg gcgaggtggt ctggacgagc
     2761 gcgcctggcg ggcgccccta cgacacgact tacgcgccgc ccatcatcgc agacgttgcg
     2821 ggcacgcggc tgctcataca gggcggggcc gacgggatgg cttacgccgt caagccgcag
     2881 acgggcgagc cggtctggcg ggctcatgtc tcgcagcgcg gcatcaacac cggcgtcgtc
     2941 gtcaagggga cgacggcgat actcacgcac agtgaggaga acttggaagg cagcgagatg
     3001 gggatgatcg ccgccgtgga cgccacctca aagggcgaca tcaagaagga gcagtacaag
     3061 tggagccggc tcggctggca gggcggcttc tctacgccgg tgctcgacgg cgaccggctt
     3121 taccaggttg acaacggcgc caacctcggc gccttcgacg tcgcgacggg caagcaactc
     3181 tggctacaga acctcggcac gatccagaag gcttcgcccg tgctcgccga cggcaagctc
     3241 tacgtcggga cagagaacgg caagttcttc atcatcgagc cgtcggccac cggcgccaag
     3301 attctggacg aagaccagct cggcacagag gcgcagcccg aggccatcat cgcctccgtc
     3361 gccgtctcga acggccggat cttcctcgta acggacacgg cgacttactg catcggcaag
     3421 aagcactccg ccaagtcgtc cgccgcctcg ttcgagaagt tgaccctcgt cgtcagttcg
     3481 cagcggcccc agaacctgac taatgcggcc gtcgctcatg tgcaggtcgt ccccgcggac
     3541 gtgatgataa ggccgggcga gagcgtgcgc ttccgcgtgc gcctcttcga cgagcgcggc
     3601 aaccttatac gcgaggagaa gggcgcgacg tggtcgctcg acaagctcga cggcaaggcc
     3661 gaagccaatc agttcaccgc gactgccggg gcgaccgcgg cgcaggccgg cgaggtgcgc
     3721 gcgacggtcg cgggcgtgac gggggcggcg cgcgtgcgcg tagtcccgcc gctgccgtgg
     3781 tcggagaact tcgactcgtc ggaggtgaac accttcccgc agcactggac gaacacgggg
     3841 atgaagtaca tcgtgcgcga ggtcgagggc agcaaggcgc tcgtcaagac cgtcgagggc
     3901 tcttcgctcc ttacgcgcgc gcgcgcctac atgggcttaa gcgacctcca cgactacacc
     3961 gtggaggcgg acgtgcgcgc gacggagaag cgccggcagt tgggcgacgc gggcgtcata
     4021 gcgcagcgct acgccctcgt cctcttcggc aactcgcaga agctcgaaat ctcgccgtgg
     4081 cagcccgaga cggcgcgcgt cgccagcgtc ccgttcgcgt ggaagcccga cacgtggtat
     4141 cgcttgaagc tgagggtcga gaacctgccg ggcgggcgcg tgcgcgcaca gggcaaggcc
     4201 tggcccgcgg gcgaggcgga gcctgcggcg tggatggtcg agcgcgttga ccccatcggc
     4261 aaccggcagg gaagccccgg catcttcggc agcgcgctca cggccgaaat cttcttcgac
     4321 aacctgaagg tctatcccaa taaataagcg acggagcaaa agattaaaga cgtgaccaac
     4381 gaagccaaca cgcaagcccc gcaacacgag gggccgaccc cggagcggat attccaggcg
     4441 ctcacggcct accaggcgac ggccgcgctc aaggccgcaa tcgagctgga catcttcacg
     4501 gccatagccg aaggcgcgac gacggccgcc gagatcgccg agcgctgcgg cgcggccgag
     4561 cgcggcgcgc gcatactctg cgactacctg accgtcgggc agttcctgac gaagcagggc
     4621 gggcgctacg gccttacgcc cgacacggag cttttcctga cccgacgctc gcccgcgtac
     4681 ctcggcggca tggtcgagtt cctgtgcggc ccgcacctcg tcggcgcctt ccaggcgaac
     4741 ttcaccgaga gtgtccgcaa gggcggcacg gcaatgccgg agcagggctc gatgacgccc
     4801 gagcacccga tgtgggagga cttcgcgcgc agcatggcgg ccatgatgca catgccggcg
     4861 gaggcgatag cgggcatcgt cggggccgag gggatggaga cgtgcaaggt gctcgacatc
     4921 gccgcgggcc acggcgtctt cggcgtcgcg ctggcgcgcc acaacccgcg cgcggaagtg
     4981 tatgccgtgg actggcagaa cgtcctgccg ttcgcccgcc gcacggccga ggcggcgggc
     5041 gtggccgagc ggttccacga aatccccggc tcggccttcg acgtggagtt cggcgacggc
     5101 tacgacctcg cgctcctgac caactgcttc caccacttcg acaagccgac ctgcgtcgcg
     5161 ctgatgcgga aggttcactc ggcgctcaag ccgggcggcc gcgccgtaac gctcgagttc
     5221 gtccccgacg aagaccgcgt cacgccgccc gccgaggcgg ccttcgcgct gataatgctc
     5281 ggcacaaccc cctcgggcga cgcctacacc ttcggagagt tcgacgcgat gttccgtgag
     5341 gccggcttcg cccgcagcga gataatcgcc gtcccgccgc agcacgtgat cgtctcttac
     5401 aagtaatgac agagcacaag gaaccgtcaa tgagatttcg caacaacgcc acccgcctcg
     5461 cgctcgccgc ggcgctggtc tccgccttct gcctcctgcc ttccgccttc cccgtctccg
     5521 accccggcac gggcgactgg ccgatgtggg gcgggacgcc ggacaggaac atggtgacga
     5581 aggcgaaggg gctcccggcg agctgggacg tgaaaacgag gaagaacgtc aagtgggtcg
     5641 cagacctcgg ctcgcagacc tacggcaaca tcactgtctc ttcgggagtc gtcttcgtcg
     5701 gcaccaacaa cgagggcaag cgcgacccga agataacggg cgacaagggt gtgctcatgg
     5761 ccttcgacga gaagacgggc gccttcctgt ggcaggccgt gcacgacaag ctcgccgctg
     5821 gccgcgtcaa cgactggccg ttccagggca tagcctcctc gccgctcgtc gagggcg
//
LOCUS       DASPKR010000291         4730 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_426955, whole genome shotgun sequence.
ACCESSION   DASPKR010000291 DASPKR010000000
VERSION     DASPKR010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4730)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4730
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426955"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..858)
                     /locus_tag="VD968_08090"
     CDS             complement(<1..858)
                     /locus_tag="VD968_08090"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HYE14383.1"
                     /translation="MKYLAPLALILAFAAAAPAQRPNVVLVVTDDQPRSTIQHMPLTK
                     SLLNVNFTNAYVTTPTCCPSRVGVFTGLYSHNTGVLGNHAPLGGATAFSDAETLAVWL
                     QRLGYRTALMGKYLNDYRLVWWHVPPGWDEWRAWIDPAGTANFNAYHLNEGGVKRYRT
                     EYVTDYLFRRADDFIMAAPADRPFFLYVAPPTPHDPYTPSAADRGKFSTLPLPKPPNF
                     DEEDVSDKPIWVRKLPRFSAEDLARIESDYRSVVESVQSIDRGVKKLFDALESTGRLD
                     NTVFIFTSDN"
     gene            complement(976..1050)
                     /locus_tag="VD968_08095"
     tRNA            complement(976..1050)
                     /locus_tag="VD968_08095"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1013..1015),aa:Arg,seq:tcg)
     gene            complement(1116..1589)
                     /locus_tag="VD968_08100"
     CDS             complement(1116..1589)
                     /locus_tag="VD968_08100"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HYE14384.1"
                     /translation="MKSLKLALAAAALAAYATGCGGDATTNTNQTANSNARAGANAPT
                     PAPTATATPDELARAAGDFSQFCARCHKTDGTGGMVDLEDGKKLEVLSLREHGLKDSD
                     EHLAEQIRKGGDGMPSFEKRLDAERINNLVRFIRREFHGRSAAAPAGPLSPAPAH"
     gene            complement(1676..3100)
                     /locus_tag="VD968_08105"
     CDS             complement(1676..3100)
                     /locus_tag="VD968_08105"
                     /inference="COORDINATES: protein motif:HMM:NF012263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b N-terminal domain-containing
                     protein"
                     /protein_id="HYE14385.1"
                     /translation="MSAGVRTGFGFALDNLLDEPGAGVSAWMRTTAGVVALLLAVQFT
                     TGLLLAFFYVPSAESAHATVAYVEKVLDSGPWVRALHLYASQLLPLALLSHLAQSFWR
                     GAHRRKPFGWAASVLLLGLVMAGGGTGYSLPWDARAFYSTRVAENLAAGLPLVGGRAR
                     AWLLGGGEISTLTVSRLYALHALVIPALILLITFARLFVAREPGPGGAVTERPRGGDW
                     VRAQLARNAVVAGAVFLALALWASKFPAPLGPPAEAAPAGYVPRPGAQFLWLFQLLKY
                     FSKTTASLVALVAPALILAALALLPFLGRRETATSNRRLSRALGLAGFASAFALVAAM
                     TLVALNEDSLDPRVSGRLAEQARQEEEFRRSPFVPLKRGGVARDSGAGTAAPSSTDSV
                     DAPPPEAYTRNCARCHGPRGEGMGVNPPLVGVSKQPQRTVEDIVRILHDPASYNLERR
                     MPSFARKLTEDEKRAVAEWVVSLE"
     gene            complement(3097..3651)
                     /locus_tag="VD968_08110"
     CDS             complement(3097..3651)
                     /locus_tag="VD968_08110"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HYE14386.1"
                     /translation="MTKPTLDGNEGEHSGAARLPEPLRRRILLWLPALVFGSAGASLL
                     AAAYRLLRPRAGEAAAGGWVEVGNVAQLSGAEPLRREVFFEQQSGWSASTRAQTVFVL
                     PGAGGRVLSASCPHEGCDVEWSAERREFQCPCHDSRFGPDGARLGGPAEHGLARLHSR
                     TNGGALEILLAPSGEEQQAGRVPG"
     gene            3800..4579
                     /locus_tag="VD968_08115"
     CDS             3800..4579
                     /locus_tag="VD968_08115"
                     /inference="COORDINATES: protein motif:HMM:NF018484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HYE14387.1"
                     /translation="MSTDNEQVGAGRPALRLADKAPRADEEPEQRAALPRQFVTFTFY
                     KARPEWRSLSAAEKDEAKRELVGLFGSYRRDLLIHTYSIVGLRSNVDFMVWRIGYSLD
                     PFQEMSARINGTALGRHLDVTQSFLSMTKRSMYIDKDNPEHVEDRLHIIPGKSKYLFV
                     YPFVKTREWYALPVEQRQEMMDEHIRVGSKYRSVKLHTTYSFGLDDQEFVVAFETDTP
                     SDFLDLVQELRESKASRYTLRDTPMFTCRQRTLAECLEALG"
BASE COUNT          800 a         1553 c         1643 g          734 t
ORIGIN      
        1 gttgtcggaa gtgaaaatga agacggtgtt gtcgagcctg cccgtgcttt cgagcgcgtc
       61 gaagagcttt ttaacgccgc ggtctatgga ctgcacggac tctacgaccg agcggtagtc
      121 agactctatg cgcgccaaat cttccgcgct gaagcgcggg agtttcctga cccatatggg
      181 cttgtccgac acgtcctcct cgtcgaagtt cggcggcttg gggagcggga gcgtggagaa
      241 cttcccgcga tcggcggccg acggcgtgta agggtcgtgc ggggtcgggg gcgccacgta
      301 gaggaagaag ggcctgtctg ccggggcggc catgatgaag tcgtcggcgc ggcgaaacag
      361 gtagtccgtg acgtactccg tgcgatacct cttcacacct ccctcgttca agtggtaggc
      421 gttgaagttg gcggtgccgg ccgggtcaat ccacgcgcgc cactcgtccc agccgggcgg
      481 gacgtgccac cagacgagcc ggtaatcgtt cagatacttc cccatcagcg ccgtgcggta
      541 gccgagcctt tggagccaca cggcgagagt ctcggcgtcg ctgaaggccg tggcgccgcc
      601 gagcggggcg tggttgccga gcacgcccgt gttgtgcgag tagagccccg tgaaaacgcc
      661 tacgcgcgag gggcagcatg tcggcgtcgt gacgtacgcg ttcgtgaagt tgacgttgag
      721 gagcgacttc gtcagcggca tgtgctgaat cgtgctgcgg ggttgatcgt ccgtgacgac
      781 gagcacgacg ttcggcctct gggcgggcgc cgctgcggcg aaggcgagaa tgagcgctag
      841 gggggcaaga tacttcatct gtctgtcacc cacagaggga tccacgccgg ggggccggcg
      901 gcttcctgcg gttcgattta tgaagggaag gggcggccga ggcttcagcg gtcgccatcg
      961 tcggataatc tcaaacgggc cgtgagggac tcgaaccccc gacacctggt tccgaagacc
     1021 agtgctctat ccaaactgag ctaacggccc ggcgctgccg cgacccgaac ccgtccgcgg
     1081 cgcgtttaag agtagcacag gcgctcggcc gtcgtttagt gggcgggcgc gggcgacaaa
     1141 ggaccggccg gcgccgccgc gctgcggccg tggaactctc ggcggatgaa acgaactagg
     1201 ttgttaatcc gctcggcgtc gaggcgcttc tcgaaggagg gcatgccgtc gccgcccttg
     1261 cgaatctgct cggcgaggtg ctcgtctgag tccttcaggc cgtgctcgcg caggctcagg
     1321 acttcgagct tcttgccgtc ttcgagatct accatgccgc ccgtgccgtc cgtcttgtgg
     1381 cagcgcgcgc agaactggga gaagtcgccc gcggcgcgcg cgagctcgtc cggcgtcgcc
     1441 gtggcggtcg gcgcgggcgt gggcgcgttc gccccggcgc gcgcgttcga gttcgcagtc
     1501 tggttggtgt tggtggtggc gtcgccgccg cagccggtcg cgtaggcggc gagcgcggcc
     1561 gccgccagcg cgagtttcaa ggatttcatg cgcaagaaaa gtctccgtaa aatgtggttc
     1621 gccaagagcg ggaaaagccg ggcgagtata acttacgcgg cctgtgcgta tccagttact
     1681 caagcgagac gacccactcg gcgacggcgc gcttctcgtc ttccgtgagc ttgcgcgcga
     1741 aggagggcat gcgccgttcg aggttgtagc tggcggggtc gtggagtatg cgcacgatgt
     1801 cctcgacggt gcgctgcggc tgtttggaga cgccgacgag cggcgggtta actcccatgc
     1861 cttcgccgcg cgggccgtgg cagcgcgcgc agttgcgcgt gtaggcttcg ggcgggggcg
     1921 catcaacgga gtctgttgac gaaggggctg ccgtccccgc tcccgagtcg cgcgccacac
     1981 cgccgcgctt gagggggacg aagggagagc gccggaactc ttcctcctgt ctggcctgct
     2041 ccgcgagccg cccgctcacg cgcgggtcga gcgaatcttc gttcagcgcg acgagcgtca
     2101 tcgccgcgac gagcgcgaag gcggaggcga agcccgcgag gccgagggcg cgtgagagtc
     2161 tccggttcga ggtcgccgtc tcgcgcctgc cgaggaaggg cagaagcgcg agcgccgcga
     2221 ggatcaatgc gggggcgacg agcgcgacca gcgaggccgt cgtcttcgag aagtatttaa
     2281 gaagctgaaa gagccatagg aactgcgcgc cggggcgcgg gacgtagcct gccggcgcgg
     2341 cctcggccgg cggccccaaa ggcgccggga acttcgacgc ccagagcgcg agagcgagaa
     2401 acaccgcgcc ggcgacgact gcgttacgcg ctagctgcgc gcgtacccaa tcgcccccgc
     2461 gcggccgctc tgtcactgcg ccgcccgggc cgggctcgcg cgcgacgaag aggcgcgcga
     2521 aagttatcag gagtatgagc gccgggatta cgagggcgtg cagggcgtag aggcgcgaga
     2581 cggtgagcgt cgaaatctct ccgccgccga gcagccacgc ccgcgcgcgc cctccgacca
     2641 gggggaggcc cgccgcgagg ttctcggcga cgcgcgtgct gtagaaggcg cgcgcgtccc
     2701 acggcagcga gtagcccgtg ccgccgcccg ccatcacaag ccccagcagc agcaccgagg
     2761 cggcccagcc gaaaggcttg cggcggtgag caccgcgcca gaacgactgc gcgaggtgtg
     2821 acaggagggc gagcgggaga agttgagagg cgtacaggtg aagcgcgcga acccacgggc
     2881 cgctgtcgag aaccttctcg acgtatgcga ccgtcgcgtg cgcgctctcg gccgagggga
     2941 cgtagaagaa ggccagcagc agccccgtcg tgaactgcac ggcgagcagt agcgcgacga
     3001 cgcccgccgt cgtcctcatc catgccgaca cgcccgcgcc gggctcgtca agcaggttgt
     3061 cgagcgcgaa gccgaagccc gtgcgcacgc ccgcgctcat cccggcaccc gccccgcttg
     3121 ttgttcttcg ccggagggcg cgagcaggat ttcgagggcg ccgccgttcg tgcgcgaatg
     3181 gaggcgcgcg aggccgtgct cggccgggcc gccgaggcgc gcgccgtcgg ggccgaagcg
     3241 gctgtcgtgg caggggcatt ggaactcgcg ccgctcggcg ctccactcca cgtcgcagcc
     3301 ctcgtgcggg cacgacgccg agagcacccg tcctcccgcc cccggcagca cgaagacggt
     3361 ctgcgcgcgc gtcgaagcgc tccacccgct ctgctgctcg aagaagactt cgcgcctcag
     3421 aggctcggcg cccgaaagct gcgcgacgtt cccgacctcg acccatccgc ccgccgccgc
     3481 ctcacccgcg cgcggccgca gcagcctgta ggcggccgcg agcagggaag ccccggccga
     3541 gccgaagacg agggccggca gccacagaag aatcctccgc cggagcggct cgggcagtcg
     3601 cgcggcgccg ctgtgctcgc cttcgttacc gtctaaagtc ggtttcgtca tcgcccgtcg
     3661 tggcctcgcg ccgcgtttgc aatctaccgc cgtacgaagc acaataagcg cggatcggcg
     3721 ggcgcccatt ctacccgatt taaacgccta ctgaagaagc catcaaactc cctgaaaatt
     3781 ccctaaggaa gtaacaccca tgagcacgga caacgagcaa gtaggtgcgg ggcgcccggc
     3841 gctccgccta gccgacaagg ccccgcgcgc ggacgaggag ccggagcagc gcgccgccct
     3901 cccgcgccag ttcgtcacct tcaccttcta caaggcgagg cccgagtggc gctcgctcag
     3961 cgcggccgag aaggatgagg ccaagcgcga gcttgtcggg ctgttcggct cgtaccggcg
     4021 cgacctgctc atacacacct actcgattgt gggcctgcgc tcgaacgttg acttcatggt
     4081 ctggcgcata ggctactcgc tcgacccgtt ccaggagatg tcggcgcgca taaacggcac
     4141 ggcgctcggc cgccacctcg acgtgacgca gagcttcctc tcgatgacga agcgctcgat
     4201 gtacatagac aaggacaacc ccgagcacgt cgaagaccgc ctgcacatca taccgggcaa
     4261 gtcgaagtac ctgttcgtct acccgttcgt caagacgcgc gagtggtacg cgctgcctgt
     4321 cgagcagcgg caggagatga tggacgagca catccgcgtc ggctcgaagt atcgctccgt
     4381 gaagctgcac acgacctact ccttcggcct cgacgaccag gagttcgtcg tcgcgttcga
     4441 gaccgacacg ccctcggact tcctcgacct cgtgcaggag ctgcgcgagt cgaaggcgag
     4501 ccgctacacg ctgcgcgaca cgcccatgtt cacctgccgg cagcgcacgc tcgcggagtg
     4561 cctcgaagcc ctcggctgac gggaaagaag agaccgagcg cggagagcag ctatgaagac
     4621 gggaaagcct ctgggttgtt tctccgcgtt tctctgcctg tgcctcatct cgctctcact
     4681 ctccgcccag accgacgcga aagtttccta cgaatacctc tggtacgagg
//
LOCUS       DASPKR010000292         2437 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1073678, whole genome shotgun sequence.
ACCESSION   DASPKR010000292 DASPKR010000000
VERSION     DASPKR010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2437)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2437
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1073678"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..888
                     /locus_tag="VD968_08120"
     CDS             <1..888
                     /locus_tag="VD968_08120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14388.1"
                     /translation="GALERGYRTGYSDGYQSGWADQLRRAPADYRNKADYRSADRAYI
                     AAYGSLEDYSDGYRQGYEVGYEAGYSRRGFDSSLPSGGVTRRGPAPAGDAARANPDDE
                     EGEESSSAPPTRRGGGAAAVPSGTMLVVELLNRLSTDVSQRGDRFEARVVEPAEFEGA
                     TVGGRLAAVERAGKAKGRALLQLDFDQIRMPGAADWAEFSAQVVEVLPSGETGAGEVD
                     EEGGVRGKSTTKEDVAKVGGAAGVGAIIGAIAGGGKGAAIGAIIGGSAGTAGVMTQRG
                     KDIRFEPGQQFRIRSTGPR"
     gene            957..1778
                     /locus_tag="VD968_08125"
     CDS             957..1778
                     /locus_tag="VD968_08125"
                     /inference="COORDINATES: protein motif:HMM:NF014003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent chlorinase/fluorinase"
                     /protein_id="HYE14389.1"
                     /translation="MIVTLLTDFGTADYFVGAMKGAVLAVNPGAKLVDITHEIPAHDV
                     EAGAFTLLAAQETFPAGTVHLAVVDPGVGSERRPVVVEAAGHLFVGPDNGIFGYIYER
                     AGGCRAFHLTNRSYRRQSVSSTFHGRDVFAPAAGALSLGVRPEELGEEVTDFVRLPLA
                     APRRAADGSLEAAVIHVDHFGNLVTNLTPGDLAGARFDGDVRLLVGAQEVTTLRGFFA
                     EERGEAGAPFAIWGSAGFLEVSVFRDSAARQLGVRRGQPVIVAWPGSKTPHPSAR"
     gene            1844..>2437
                     /locus_tag="VD968_08130"
     CDS             1844..>2437
                     /locus_tag="VD968_08130"
                     /inference="COORDINATES: protein motif:HMM:NF012506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HYE14390.1"
                     /translation="MDKVEGKSAAAAKAPAGLEGVVAAESSIGDVDGTNGVLIYQGYD
                     IHDLAERSTFEETVYLLWHGRLPKREELEALRGELAAASKLPEEVIAILRSFPRGAEP
                     MGALRTAVSALAFYDEGARDLSRGGALRSATRLTAQLPVIVAAFENIRNGRDPVEPKP
                     GLDIASNFLYMLRGETPSEREARVFDVCLILHADHELN"
BASE COUNT          379 a          848 c          857 g          353 t
ORIGIN      
        1 ggcgcgctcg agcgcggcta ccggacgggc tactcggacg gctaccagtc gggctgggcc
       61 gaccagttga ggcgcgcgcc cgcggactac cgcaacaagg ctgactaccg gagcgccgat
      121 cgggcttaca tcgccgccta cgggtcgctc gaggactaca gcgacggcta ccggcagggc
      181 tatgaggtcg gttacgaggc gggctacagc cgccgcggct tcgactcgtc cttgccttcc
      241 ggcggcgtta cgcgcagagg gcctgcgccc gcgggcgacg cggctcgtgc taacccggat
      301 gacgaagagg gcgaggagag cagcagcgcg cctccgacgc gcaggggcgg cggggcggcg
      361 gccgtgcctt caggtaccat gctcgtcgtc gagcttctca accggctctc gacggacgtg
      421 agccagcgcg gcgaccgctt cgaggcgcgc gtcgtcgagc cggccgagtt cgagggcgcg
      481 accgtgggcg ggcgcctcgc cgccgtggag cgcgcgggca aggctaaggg gcgcgcgctg
      541 ctccaactcg acttcgacca gataaggatg cccggcgccg cggactgggc agagttcagc
      601 gcgcaggtcg tagaagtcct cccctcgggg gagacgggcg cgggcgaggt tgacgaggag
      661 ggcggcgttc gcggcaagag cacgacgaag gaggacgtgg cgaaggtggg cggcgccgcg
      721 ggcgtcggcg ctatcatcgg agcgatagcc ggcggcggca agggcgcggc catcggcgct
      781 atcatcggcg gctccgcagg cacagccggc gttatgaccc agcgcggcaa agacatacgc
      841 ttcgagcccg gccagcaatt ccgcatacgc tcgaccggcc cgcggtaaaa caggcggtag
      901 cccgtccgtg ttactacgcc ctccctggcg gccgggctac cgccttgagc tctactgtga
      961 tcgttactct cctgacagac ttcgggacgg cggactactt cgtcggggcg atgaaggggg
     1021 cggtgctcgc ggtcaacccc ggcgcgaagc tcgttgacat cacgcacgag atcccggcgc
     1081 acgacgttga ggccggcgcc ttcactctgc tcgccgcgca agagaccttc ccggccggca
     1141 cagtccactt agctgtcgtt gaccccggcg tcggctcaga gcggcgcccc gtcgtcgtcg
     1201 aggccgcggg acatctcttc gtcggccccg acaacggcat cttcggctac atctacgagc
     1261 gcgcgggggg ctgccgcgcc tttcacttaa cgaatcggag ctaccggcgt cagtccgtca
     1321 gttccacctt ccacgggcgc gacgtgttcg cgccggccgc gggcgcgctc tcgctgggcg
     1381 tgcggccgga agagctcggc gaagaagtca cggacttcgt gcggctgccg ctcgcggcgc
     1441 cgaggcgggc ggccgacggc tccctcgaag ccgcggtcat acacgttgac cacttcggca
     1501 acctcgtcac caacctcacg cccggagacc tcgcgggcgc gcgcttcgac ggcgacgtgc
     1561 gcctgctcgt cggcgcccag gaggtcacga cgctgcgcgg cttcttcgcc gaagagcgcg
     1621 gcgaggccgg cgcgcccttc gccatctggg gcagcgccgg cttcctagag gtctcggtct
     1681 tccgcgactc ggcggcgcgc cagctcgggg tgcgcagagg gcagccggtc atcgtcgcct
     1741 ggccgggctc aaagacgccc cacccctcgg cccgctagtt ggaactttaa cccgccgttt
     1801 gctatcttca actcactttc agaaccgaag gaacggaagc gaaatggata aagtcgaagg
     1861 caagtcggcc gcggccgcga aggccccggc ggggctcgag ggcgtcgtgg ccgccgagtc
     1921 gtccataggc gacgttgacg gcacgaacgg cgtcctgatc taccagggct acgacataca
     1981 cgacctcgcc gagcgctcga ccttcgagga gacggtctat ctgctctggc acggccgcct
     2041 gccgaagcga gaggagcttg aggccctgcg cggcgagctg gccgccgcct cgaagctgcc
     2101 cgaagaggtt atcgcgatcc tgcgtagctt cccgcgcggg gcggagccta tgggcgccct
     2161 tcgcacggcc gtatccgcgc tcgccttcta cgacgaggga gcgcgcgacc tctcgcgcgg
     2221 gggcgcgctg cgctcggcga cgcggctgac ggcgcaactg cccgtcatag tcgccgcctt
     2281 cgagaacatc cgaaacggcc gcgaccccgt agagcccaag cccgggctcg acatcgcctc
     2341 caacttcctc tacatgctcc gcggcgagac gccctccgag cgcgaggcgc gcgtattcga
     2401 cgtgtgcctg atactgcacg cagaccacga gctgaac
//
LOCUS       DASPKR010000293        11201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1850152, whole genome shotgun sequence.
ACCESSION   DASPKR010000293 DASPKR010000000
VERSION     DASPKR010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11201)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11201
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1850152"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..205
                     /locus_tag="VD968_08135"
     CDS             <1..205
                     /locus_tag="VD968_08135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14391.1"
                     /translation="IPPTREYRHTLSTLVGGLVGQGFVILHISDYTDLDPDPNAEPGT
                     WDHLISVAPPWLSFWASYRPGVL"
     gene            216..857
                     /locus_tag="VD968_08140"
     CDS             216..857
                     /locus_tag="VD968_08140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14392.1"
                     /translation="MGIREIIEGLLGLKEQRQLGRAREEPEAAARDLVEEHCKARAAG
                     RGHTSAIDEAAERLSALERNLKQVRAEFEQATAGPEPEPLELTELVLRKVRESFPAEE
                     QAEAISLLEKRCGRNLPYLEDSDARGLERVRLAVVKLSGGSLGELERQVEVAKQDWRD
                     VLILAESPEAVREGLYRVMEELDAETRSEVLERDRQQYERWLRGGGEPETPGV"
     gene            885..1433
                     /locus_tag="VD968_08145"
     CDS             885..1433
                     /locus_tag="VD968_08145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14393.1"
                     /translation="MDGKRELLRHFLAALAYRTQKALRGAPESFYSFSAAPAVRTPLE
                     LVRHMESVLGYARTFFVGGEYDQEPLADFKSEVERFHKTVEELARHLESGTPLRGIGP
                     EQLLQGPFSDAMTHAGQLAMLRRLAGSPVPPENFVYADVRPDNLGPDQPPPARPGGKY
                     SGWTEEELSRSGAADGSRNQGG"
     gene            1437..3626
                     /locus_tag="VD968_08150"
     CDS             1437..3626
                     /locus_tag="VD968_08150"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE14394.1"
                     /translation="MLLLKRLGNVLCAAALALCAFAHVAPARQSAGEPQSGDEEVLRI
                     NTELVQTGVTVFDSRGRFVDGLRKEDFELRVDGRPVPISFFESIVAGSLRDRLARAAR
                     EDGPAAAASAAAPAHSYRQRTVVFFIDDRHLSLDSVSRSRKMLLDFIDKEMGPNDLVA
                     IASSSGQIGFLQQFTDNKDVLRAAAGRLMPVPYVVTDYGRNPGAPLTEYMALTIERRD
                     DPNVFEFYVQDCVKYAPKGATRQERGGMRRQCEVEVTNRARQILIQAGMVTSATYHSL
                     ESLLSHAGKMPGSKLAFFISDGFLPDAGPRGPVGSDKLGRLTDKARRSGVVIYTIDAR
                     GLISGALDAAGSVPFDPDGRLENANLREIAASQDALNALAEDTGGRALRNQNTFDRFI
                     GDALEETSRYYLIAWRPEADGQKDGKLRKIEVTVKGRPELTVRSARSLVGSSAAAVER
                     AAREEKATATAAKPAADLREALTDSHPTQALPLQLSLIYLDTPASGPVLTTSVLAPTG
                     PLNYGAHGTEPARLTLAGVILDDRGKPAASFRAGLKVDPPRSGGGASSVIYNYPSPLK
                     PGIYQARVAARDDRSGLLGSAMQWVVIPDLSKRALSLSSLIVGLEAVGDRGAEAGRIQ
                     WSVDKKFAHGSRLRFMLFVYNAARPAAGAPVNLAVRSQVYRDGRPVIPAPFKRVALGA
                     EADPARVPFTEEINLGELQPGRYTLEVTVEDLAAHKTAAQQTSFYVQ"
     gene            3883..5355
                     /locus_tag="VD968_08155"
     CDS             3883..5355
                     /locus_tag="VD968_08155"
                     /inference="COORDINATES: protein motif:HMM:TIGR02037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HYE14395.1"
                     /translation="MSRERVGCALLLLSLLTLSAGCRRRETFTLPQPSAQGGGVSAEV
                     EKNSYADLVARVAPAVVTIRAERVVRAPQQHPFMDDPFFRDFFGDRMPQGQQQRPQLQ
                     EGLGSGVLISADGHIVTNHHVIDGAEEIEVELTDRRTFSAKLVGSDAPSDLAVLKVDA
                     KDLPVLTLGDSDKVRVGDVVLAVGNPLGVGQTVTSGIISAKGRRTGLSDGSFEDFLQT
                     DAAINRGNSGGALVNAAGELIGINSQILSPSGGNIGIGFAIPSNMARGVAEQLINKGN
                     VRRGQLGVVVQAVTAEMASSMGLREARGVIVNQVQPGSAAARAGVQQGDIITALNGNA
                     VNEPNELRNLVASTQPGTEVTLTLLRDGREEQLKVTLGELSAGGRQRGQNVPGGDGEQ
                     SEGGKLGIGVAPVTPELAARLRLPEGAQGLIITRVDPEGPAAQARLREGDLIEQANRQ
                     PVRTVEDLRAAIQRSTDRPILLLINRPGEGNVFVTVRPRG"
     gene            5365..5670
                     /locus_tag="VD968_08160"
     CDS             5365..5670
                     /locus_tag="VD968_08160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14396.1"
                     /translation="MYLVELLLPLYDNEGRAFGPPEFDRVRDELAERFGGVTAFRRSP
                     AEGLWAEGGEKSRDRVVIFQVMTDALDRAWWSEYRRELERRFRQEKMVVRATEFEEL"
     gene            6064..6465
                     /locus_tag="VD968_08165"
     CDS             6064..6465
                     /locus_tag="VD968_08165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016275205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HYE14397.1"
                     /translation="MTVRLYVGNLAFQTTSDDLQQLFSQAGTVESANVIEDRETGRSR
                     GFGFVEMATKEEAEAAISQFNGREVGGRALTVNEARPREDRGGGGGRGGYGGGGGRGG
                     YGGGGGGRGGYGGGGGGRGGGGGGGNREPRW"
     gene            6622..7872
                     /locus_tag="VD968_08170"
     CDS             6622..7872
                     /locus_tag="VD968_08170"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HYE14398.1"
                     /translation="MNFSDLGLTPALARRCDALGYTEPTPIQRRAIPVVLTGADLIGC
                     AETGTGKTAAFLLPTIQRMAARPRPGVRVLVLAPTRELALQIEESYRELAPKGSPSCA
                     TLIGGTGFKQQLDALRRGAGVVVATPGRLLDHMERGTVSLAGVEVLVLDEADRMLDIG
                     FLPAIRRIVAELPTERQTLLFSATMSEPIEELARRTMRRPELVEVNQRGRAAEMVEQS
                     AYPVAMESKTALLLDLLERERFERVLVFTRTRRGAERLSHILEAREHKVSRIHSDRTQ
                     PQREAALRGFKEGRTRVLVATDIAARGIDVDSVSHVINYDVPAVPEDYVHRIGRTGRA
                     GNSGRAITLVTPVEELSMRAIERLTGQAVERVVLPGFGGMAGRAAAATAFAGTASAVK
                     KPFASLRRAGGGTRRSFRPRRAGR"
     gene            7941..8162
                     /gene="infA"
                     /locus_tag="VD968_08175"
     CDS             7941..8162
                     /gene="infA"
                     /locus_tag="VD968_08175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003130554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HYE14399.1"
                     /translation="MSKEDLIPAEGTIIDKQPNAFFKVQLHNSDHVVLAQISGKMRKN
                     RIRILVGDRVSVEMSPYDLTRGRITYRYK"
     gene            8177..8533
                     /locus_tag="VD968_08180"
     CDS             8177..8533
                     /locus_tag="VD968_08180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14400.1"
                     /translation="MEAEKRNYAVGERVEKLCAVCGEERGHVVASVTKRGQVSRVSCP
                     KCGTRSSFKGGGAGSAAGAAAKAASAYDPARTYRAGQSVIHPTFGQGEVTAVIEPQKI
                     DVLFSDRLRRLIHARG"
     gene            8793..>11201
                     /locus_tag="VD968_08185"
     CDS             8793..>11201
                     /locus_tag="VD968_08185"
                     /inference="COORDINATES: protein motif:HMM:NF025068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease family protein"
                     /protein_id="HYE14401.1"
                     /translation="MSLGKFSRYALLSVIVVAVLAAALISTRPTSSQTAAGEVWQDVA
                     EGSIPAAGVRDIVPAAYRTVRLDRAALSQALVSAPMEFTAAASQTETVLAVPMPDGTL
                     SRFRVEESPIMEPGLAAYYSDWKTYRGQGIDDPTATARFGVTRAGFHAIVLSAGETVY
                     IDPYSKGDTENYISYYKRDLVGDRRFECRVGDLYAAEGEAEPVEAEADDLITPNVVAP
                     NAGTLRTYRLALAVTGEYTMYFSELLDSEDVKKDKAFAAMVATMNRVNGVYERDFSVR
                     MIFINDQRNIIYTNPVTDPYPTDPVGLTLIDVNQVVLDTPKPVGPVGEGNYDIGHLMS
                     TGIGGVAYLRSVCNRGNPDIPADGTNAGGYTGLDVPEGDGFDIDFVAHEMGHQFGGNH
                     TFNGQSGSCSGTNRSAGAAYEPGSGTTIMAYAGICGLQDLQPHSDADFHVRSLEEVTA
                     FIKNGTTGGSCSTNIALNNNAPTANAGPDYNVPKNTPFTLTASASDPDAGDALTYDWE
                     EYDLGPAATAGNDHDAVSARPIFRSYLPTTSPSRTFPSLRYILENANTPPTSYNCGRP
                     DHIINGPRPCLTGEVLPQITRTMKFQVTVRDNRAAGGGIDSDEMQVNVHAGAGPFVVQ
                     QPNTAVEWEGASTQTVTWAVAGTSAAPINAANVRITLSTDGGQTFPHVLAETTPNDGS
                     QAVTVPNLPTEAARVKIEAVGNIFFDISNANFTIKQAVGRVASISVSSLTNGCTPELQ
                     GKVALEAPAPAGGTVVNITENHPAAEFPAAVFIPEGQLSKTFKYTVSPVAERVSGTIE
                     ASSGG"
BASE COUNT         1970 a         3800 c         3766 g         1665 t
ORIGIN      
        1 tatcccgccc acgcgggagt accggcacac gctgagcact ctggtaggcg gccttgtcgg
       61 gcagggcttc gtaatcctgc acatatccga ctacaccgac ctcgaccccg acccgaacgc
      121 cgagccgggg acgtgggatc atctcatttc ggtcgcgccg ccgtggctca gcttctgggc
      181 ctcctaccgc cctggagtgt tgtgaggcag agggtatggg gatacgcgag ataatcgagg
      241 gcctgctcgg cttgaaggag caacgccaac tcggtcgggc gcgtgaagag cccgaggccg
      301 ccgcgcgcga cctcgtggag gaacactgca aggcgcgcgc ggccggccgc ggccacacgt
      361 cggcgattga tgaggcggcc gagcgcctga gcgccctaga gcgaaacctc aagcaggtga
      421 gggccgagtt cgagcaggcc acggccggac ctgagccgga gccgttggag ctgacggagc
      481 ttgtgctcag gaaggtgagg gaatcattcc cggccgaaga gcaggccgag gcgataagcc
      541 tgctggagaa gcggtgcggg cggaacctgc cctacttaga agactccgac gcgcgtggcc
      601 tcgagcgcgt gcgtctggcc gttgtgaagc tctcgggcgg cagtttggga gaactagagc
      661 ggcaggtgga ggtggcgaaa caggactggc gcgacgtgct catactggcc gagagcccgg
      721 aagcggtgag ggagggcctt tacagagtca tggaggaact cgacgcggag actcgcagcg
      781 aggtgttgga gcgcgaccgg cagcagtacg aacggtggct gcgcgggggc ggtgagcccg
      841 aaacgcccgg cgtatgatga cggcattttg tagagggctt aagtatggat ggtaagcgtg
      901 agcttcttcg tcatttcctc gcggccctcg cgtaccgcac gcagaaggct ctgcgcggcg
      961 cgcccgaatc cttctattca tttagcgccg ccccggcggt taggactccg ctcgagctcg
     1021 tcaggcacat ggagagcgtg ctgggctacg cgcgcacttt cttcgtcggc ggcgaatatg
     1081 atcaggagcc gctcgcggat ttcaagtccg aggtcgagag gttccacaag accgtcgaag
     1141 agttggcgcg gcacctcgaa agcggcacgc cgctccgggg catcgggccg gagcaactcc
     1201 tacaggggcc tttctccgac gccatgaccc acgccggcca gttggcgatg ctgcgcaggc
     1261 tggcgggctc tcccgtgccg ccggagaact tcgtctatgc cgacgtgcgg ccggacaact
     1321 tgggccccga ccagccgccg ccggcgaggc cgggggggaa atacagcggt tggacagaag
     1381 aggaactaag tcggtcgggc gcggccgacg gctctcgaaa ccagggcggg tgaaaaatgc
     1441 ttttactgaa aaggctcggc aatgttctct gcgcggcggc gctcgccctc tgcgccttcg
     1501 cgcacgtcgc gcccgcgcgg cagtcggcgg gcgagccgca gtccggggac gaagaagtcc
     1561 tcaggatcaa cacggagctt gtgcagaccg gagtcaccgt cttcgacagc cgggggcgct
     1621 tcgttgacgg gctgaggaag gaggacttcg agctgcgcgt tgacggccgc cccgtcccca
     1681 tctccttctt cgagagcatc gtggccggga gcctcagaga ccgtctggcc cgcgcggccc
     1741 gggaggacgg gccggcggcg gccgcttccg cggccgcgcc tgcgcactcc taccgccagc
     1801 gcaccgtcgt cttcttcata gacgaccgcc acctctcgct cgacagcgtc tcgcgctcgc
     1861 gcaagatgct cctcgatttc attgacaagg agatggggcc aaacgacctg gtcgccatag
     1921 cctcgtcgag cggccagata ggcttcctac agcagttcac cgacaacaag gacgtgctgc
     1981 gcgcggccgc ggggcggctc atgcccgtcc cttacgtcgt gaccgactac gggcgcaacc
     2041 ccggcgcccc tctgaccgag tacatggccc tgaccataga gcggagggac gaccccaacg
     2101 tcttcgagtt ctatgtccag gactgcgtga agtatgcgcc gaagggtgcg acccgccagg
     2161 agcgcggggg gatgcgccgc cagtgcgagg tggaggtcac gaaccgcgcc cgccagattc
     2221 tcatacaggc cggcatggtc acttccgcca cgtaccattc gctcgaaagc ctcctcagcc
     2281 acgccgggaa gatgccgggc agcaagctgg ccttcttcat ctcggacggc ttcttgccgg
     2341 acgcggggcc gcgcggcccc gtggggagcg ataagctcgg gcgccttact gacaaggcgc
     2401 ggcgctccgg cgtggtcata tacacgatag acgcccgcgg ccttatctcg ggcgctctcg
     2461 acgcggcggg cagcgtgccg ttcgaccccg acggcaggct ggagaacgcc aacctgcgcg
     2521 agatcgccgc gtcgcaggac gccttaaacg cactcgccga ggacacgggc gggcgcgccc
     2581 ttcgcaatca gaacaccttc gaccggttca tcggcgacgc gctcgaagag acctcccgct
     2641 actacctgat agcgtggcgg ccggaagccg acggccagaa ggacgggaag ctcaggaaga
     2701 tagaggttac cgtcaagggg cgcccggagt tgactgtccg ctcggcgcgc agcctcgtcg
     2761 gcagcagcgc ggcggccgtc gagcgcgcgg cgcgcgagga gaaggcgacg gcgacggcgg
     2821 ccaagccggc cgccgacttg cgcgaggcgc tcacggattc ccacccgacg caggcgctcc
     2881 ccctacagct ctccctgata tacctcgaca cgcccgcgag cggcccggtg cttacgactt
     2941 cggttctggc gccgacgggg ccactcaact acggcgcgca cggcacggag ccggcgcggc
     3001 tgaccctcgc gggcgtaatc ctcgacgacc gcggcaagcc cgccgcgagc ttcagggcgg
     3061 ggctcaaagt tgacccgccc cgctcgggcg gcggcgcgtc gtccgtcatc tacaactacc
     3121 cttcgccgct gaagccgggc atctatcagg cgcgcgtcgc ggcgcgcgac gaccgcagcg
     3181 gcctgcttgg gagcgccatg cagtgggtcg tcataccaga cctctcgaag cgcgcccttt
     3241 ctttaagcag tctgatagtc gggctcgaag ccgtgggcga ccggggggcg gaggccggcc
     3301 gcatacagtg gagcgtggac aaaaaattcg cgcacggctc gcgcctccga ttcatgctct
     3361 tcgtctataa cgcggcgcgg cccgccgcgg gcgcgcccgt taaccttgcg gtgcgctcgc
     3421 aggtttacag ggacggccgg ccggtcatcc ccgcgccttt caagagagtg gccctcggcg
     3481 ccgaggccga cccggcgcgc gtccccttca cggaagagat taacctcggc gagttgcagc
     3541 cggggcgcta cactctggag gtcacggtcg aagacctcgc cgcgcacaag accgccgcgc
     3601 agcagacctc cttctacgtt cagtgaaaga agatgctcgc gaagggcgtg cgctcagagt
     3661 cagggcatcg ggcattcgcg gcctcggcgt ctccgccgag cacgggggaa ggcggcggcg
     3721 ccgctgcgcg agggcgcgcc ggtaaatttt gagctacggt gatactcccg taaaactttc
     3781 gggctagttg ggcgtgaaga tgcgtcggcg caagcttcgg cggggtcggc gctctaccgg
     3841 ccggggccgc gcgacgcaga tgaggcagaa ggcttaatga ttatgtcgag agaacgggtc
     3901 ggttgcgcgc tgctgctgct ttcactctta accttgtcgg ccggctgccg caggcgcgag
     3961 acgttcacgc tgccgcagcc ttccgcgcag ggcggcggcg tctcggccga agtcgaaaaa
     4021 aacagctacg ccgacctcgt cgcgcgcgtc gcgcccgctg tcgtcaccat cagggccgag
     4081 cgcgtcgtgc gagcgccgca gcagcacccg ttcatggacg acccgttctt ccgagacttc
     4141 ttcggcgacc gcatgccgca ggggcagcag cagcgcccgc agctgcagga gggcttaggg
     4201 tcgggcgtgc tgataagcgc ggacgggcac atcgtcacga accaccacgt cattgacggc
     4261 gccgaggaga tagaggtcga gctaaccgac cgccgaacgt tctcggccaa gctcgtcggc
     4321 tccgacgcgc cgagcgacct cgctgtcctg aaggttgacg ccaaagactt gcccgtgctc
     4381 acgctcggcg actccgacaa ggttcgcgtg ggcgacgtgg tgctcgccgt cgggaacccc
     4441 ctgggcgtgg ggcagaccgt cacctccggc atcatcagcg cgaaggggcg gcgcacgggg
     4501 ctctcggacg gcagcttcga ggacttcttg cagacggacg cggcgatcaa ccgcggcaac
     4561 tccggcggcg cgctcgtcaa cgccgcgggg gaacttatcg gcatcaactc gcagatactc
     4621 tctccttcgg gcgggaacat cggcataggc ttcgccatcc cgtcgaacat ggcgcgcggc
     4681 gtcgccgagc aactcatcaa caaggggaac gtgcggcgcg gccagttggg agtggtcgtg
     4741 caggccgtca cggccgagat ggcttcgagc atggggctgc gggaggcgcg cggcgtcatc
     4801 gtcaaccagg ttcagcccgg aagcgccgcg gcgcgcgccg gtgttcagca gggcgacatc
     4861 atcacggcct taaacggcaa cgccgtcaac gagcccaacg agcttcgcaa cctcgtcgcc
     4921 tcgacgcagc ccggcaccga ggtcacgctc acgctcctgc gcgatgggcg cgaggagcag
     4981 ttgaaagtca cgctcggcga gctgagcgcc ggggggcggc agcgcgggca gaacgtgccg
     5041 ggcggcgacg gcgagcagag cgagggcggc aagctcggca taggcgtcgc gccggtgacg
     5101 ccggagttgg cggcgcggct ccgactgcca gagggcgcgc aggggctcat catcactcgg
     5161 gttgaccccg aaggccccgc cgcgcaggcg cgcctgcgcg agggcgacct catcgagcag
     5221 gctaaccgcc agcccgtccg caccgtcgaa gacctccgcg ccgccataca gcgttcgacc
     5281 gaccgtccta tcctccttct catcaaccgc cccggcgagg gcaacgtctt cgtcaccgtc
     5341 cgcccgcgcg gctaaaggcc ccgcatgtat cttgttgagt tgctcctacc gctctacgat
     5401 aacgagggcc gcgccttcgg cccgccggag ttcgaccgcg tgagggacga gctcgccgaa
     5461 cgcttcggcg gcgtgacggc cttccgtcgc tcgcccgccg aaggcttgtg ggccgagggc
     5521 ggcgagaaga gccgcgaccg cgtcgtcatc ttccaggtga tgaccgacgc gctcgaccgc
     5581 gcgtggtggt ctgagtaccg ccgcgagcta gagcgccgct tccggcagga gaagatggtc
     5641 gtgcgcgcca ccgagttcga ggagctttag agattcggca aagatttgag ccgcggctgc
     5701 ggctcgggcg attgattcgg ccggggcgtc tttggagcgc cccggcctgc ctgcctcgga
     5761 ggagccaaaa ccctctaaag actgaatttg agacgccgca gcgcccgccg ggcttgcaac
     5821 cggagtggga aatagtgcat catattggtg tcactccttc tctcgcgcat caacggtgat
     5881 gcgccccgcg cctcgggatt ggcggcggcg ttttggatga ttcgagagca ggccgtcttt
     5941 caaccgcaga agccgctcta ctttgagcat ccgaacaaga gcctccgccg tcgccgttac
     6001 atcggaagcc ccttcgattc gcagcttctt ttgatactcc ctttgaggga gaggagcata
     6061 cgcatgacag ttagacttta cgtcggcaat ctcgctttcc agaccactag cgacgacttg
     6121 cagcagcttt tctcgcaggc cgggacggtc gagtccgcca acgtcatcga agaccgtgag
     6181 acgggccgct cgcgcggctt cggcttcgtg gaaatggcta cgaaggaaga ggccgaggcg
     6241 gccatctcgc agttcaacgg ccgcgaagtc ggcggccgcg ccctgaccgt caacgaggcg
     6301 cgcccgcgtg aagaccgcgg cggcggcggt ggccgtggcg gctacggcgg cggcggcggc
     6361 cgtggtggtt atggcggcgg cggtggcggc cgcggcggct acggtggtgg tggcggcggc
     6421 cgcggtggcg gcggcggcgg cggcaaccgc gagccccgct ggtaagtgac cggcgggata
     6481 accagtgaca ctttttaacg aagcgcctct ggcacagaac aagtttaagc cggaggcgct
     6541 tcgagtttgt cgggcaggcg gcgcgcgggg aaagctcact gagcgccccg cgccccggcc
     6601 cggccccaga taaggaactg aatgaatttc tctgatttgg gcctcacccc tgcgctcgcg
     6661 cgcaggtgcg acgccctcgg ttacacagaa ccgacaccga tacaaaggcg ggccatcccc
     6721 gtcgtgctga ccggcgcaga cctcatcggc tgcgccgaga cgggcacggg caagacggcc
     6781 gccttcctac tgccgaccat acagcgtatg gcggcgcgcc cgcgccccgg cgtgcgggtg
     6841 ctcgtgctcg cgccgacgcg cgagctggct ttgcagattg aagagagcta cagggagctc
     6901 gccccgaagg gcagcccctc gtgcgcgacc ctcatcggcg gcacggggtt caagcagcag
     6961 ttggacgcgc tcaggcgcgg agccggggtc gtggtcgcca cgcccggccg cctgctcgac
     7021 cacatggagc gcgggaccgt cagcctcgcc ggagtcgaag tcctcgtcct cgacgaggcc
     7081 gaccgcatgc tcgacatagg cttcctgccg gcgatccgca ggatagtcgc cgagctgccg
     7141 acggagcggc agacgctcct cttctcggcc acgatgtccg agcccataga ggagcttgcg
     7201 cgcaggacga tgcgccggcc cgagctggtg gaggtgaacc agcgcgggcg cgccgccgag
     7261 atggtcgagc aatcggccta cccagtggct atggagtcga agacggcgct gctgttagac
     7321 ctgctcgagc gcgagcgctt cgagcgcgtg ctggtattta cgcgcacgcg ccgcggcgcc
     7381 gagcgcctct cgcacatact ggaggcgcgc gagcacaaag tgagccgcat acactccgac
     7441 cgcacgcagc cgcagcgcga ggccgccctg cgtggcttca aggagggcag gactcgcgtc
     7501 ctcgtcgcca ccgacatcgc agcgcgcggc atagacgttg acagcgtctc gcacgtcatc
     7561 aactacgacg tgccggccgt ccccgaggac tacgtccacc gcatagggcg caccggcagg
     7621 gccggcaact cgggccgggc gatcacgctc gtcacgccgg tcgaggagct ctcgatgcgc
     7681 gccatcgagc gcctgacggg ccaggcggtc gagcgcgtcg tgttgcccgg cttcggcggc
     7741 atggccggaa gggccgcggc cgcgacggcg ttcgccggca cggcctccgc ggttaagaag
     7801 cccttcgcct cgctcaggcg agcgggcggc ggcacgcgcc gctcgttccg cccgcggcgc
     7861 gcggggcgtt aagggcaatc catgaaggcg tggtaaaatc cttcccgtca gcggccccga
     7921 gaatttaagg aggataacga ttgtcgaaag aagacctgat ccccgcggaa ggcaccatca
     7981 ttgacaagca gcctaacgct ttcttcaaag tccagcttca caacagtgac cacgtcgtgc
     8041 tggcgcagat atccggcaag atgcgcaaga accgaatacg catactcgtc ggcgaccgcg
     8101 tcagcgtcga gatgtcgccc tacgacctca cgcgcggccg cataacctac aggtacaagt
     8161 aagaggggtt taagtgatgg aagcggaaaa gcgcaattac gccgtcggcg agcgcgtcga
     8221 gaagctttgc gccgtgtgcg gcgaggagcg cggccacgtc gttgcctcag tcaccaagcg
     8281 cgggcaggtc tcgcgcgtga gctgcccgaa gtgcggcacc agaagctctt tcaagggcgg
     8341 cggggccggc tcggcggccg gcgcggcggc gaaggccgcc tcggcctatg acccggcgcg
     8401 cacctaccgc gcgggccagt ccgtcataca ccccacgttc gggcagggcg aggtgacggc
     8461 cgtaatcgag ccgcagaaga tagacgtgct cttctccgac cgcctgcgtc gcctcataca
     8521 cgcgcgcggc taaagccccc gggcgggcgc gcaaggagcg atgaaacgcg ataggccggc
     8581 cccgccagcg ggcgccggcc tatatctgtc cgcgcgcacg cgcaaaaaaa attaagtaaa
     8641 gaggcttgag cgcctgcctg cgggcgctca agcctctttt tcttcgcccc ctcaagattt
     8701 cctcaaccac ccgccgctaa attcccccgc gtaccctaga aacggctgtt ttcccggcac
     8761 cgccgccagt tttcggataa ggagattaag tcatgagttt aggtaaattc tcccgctacg
     8821 cccttctgtc cgttatcgtc gtcgccgtcc tggcggcggc ccttatcagc acccggccca
     8881 cgtcctcgca gacggccgcc ggcgaggtct ggcaggacgt ggccgagggc tcgataccgg
     8941 cggcgggcgt gcgtgacatc gtcccggccg cgtacaggac cgtgcggctc gaccgcgccg
     9001 ccctctcgca ggcgctcgtc tccgcgccga tggagttcac ggcggccgcg agccagaccg
     9061 agacggtgct tgccgtgccg atgccggacg gcacgctcag ccgcttccgc gtcgaggagt
     9121 cgcccataat ggagccgggg ctggcggcct actactccga ctggaagacc taccgcgggc
     9181 agggcattga cgacccgacc gccacggccc gcttcggcgt gacccgcgcg ggcttccacg
     9241 ccatcgtcct ctcggcgggc gagaccgtct atatagaccc ttactcgaag ggcgacaccg
     9301 agaactacat tagctactac aagcgcgacc tcgtcggcga ccgccgcttc gagtgccgcg
     9361 tcggcgacct ctacgcggcc gagggcgagg ccgagccggt cgaggcggag gccgacgacc
     9421 tgataacgcc caacgtcgtg gccccgaacg ccggcacgct gcgcacctac cgcctggcgc
     9481 tggccgtgac gggcgagtac acgatgtact tcagcgagct gctcgactcc gaggacgtga
     9541 agaaggacaa ggctttcgcc gcgatggtgg cgacgatgaa ccgcgtcaac ggcgtttacg
     9601 agcgcgactt ctccgtccgc atgatcttca tcaacgacca gcggaacatc atctacacaa
     9661 acccggtcac agacccctac ccgaccgacc ccgtcgggct caccctgatt gacgtaaatc
     9721 aggtcgtgct cgacacgccg aagcccgtcg gccccgtcgg cgagggcaac tacgacatag
     9781 gccacctgat gagcaccggc atcggcggcg tggcgtacct gaggtcggtc tgcaaccggg
     9841 ggaaccccga catcccggcc gacggcacca acgcgggcgg ctacacgggg cttgacgtgc
     9901 ccgagggcga cggcttcgac atagacttcg tggcgcacga gatgggccac cagttcggcg
     9961 gcaaccacac cttcaacggc cagagcggca gctgctcggg cacgaaccgt tcggccggcg
    10021 ccgcatacga gcccggcagc ggcacgacca tcatggccta cgccggcatc tgcggcctgc
    10081 aagacttgca gccgcacagc gacgccgact tccacgtccg gagcctcgaa gaggtcacgg
    10141 ccttcatcaa gaacggcacg acgggcggca gctgctcgac gaacatcgcc ctcaacaaca
    10201 acgcgcccac ggccaacgcc gggccggact acaacgtccc gaagaacacg cccttcacgc
    10261 tgacggcctc ggcctcagac ccggacgccg gcgacgcgct cacatacgac tgggaggagt
    10321 acgacctcgg gcctgccgcg accgcaggca acgaccacga cgccgtgtcg gcccggccca
    10381 tcttccgctc ctacctgccg acgacgagcc cctcgcgcac tttcccgagc ctgcgctaca
    10441 tactagagaa cgccaacacc ccgccgacga gttacaactg cgggcggccc gaccacatca
    10501 taaacggccc gcgcccgtgc ctgaccggcg aggtgctgcc gcagataacg cgcaccatga
    10561 agttccaggt cacggtgcgc gacaaccgcg ccgcgggcgg cggcattgac tccgacgaaa
    10621 tgcaggtcaa cgtccacgcc ggcgccggcc ccttcgtcgt gcagcagccg aacacggctg
    10681 tcgagtggga gggtgcgagc acgcagaccg ttacgtgggc cgtggccggc acgagcgcgg
    10741 cgcccatcaa cgccgccaac gtgcggataa cgctctcgac cgacggcggc cagaccttcc
    10801 cgcacgtcct cgccgagacg acgcccaacg acggctcgca ggccgtgacc gtcccgaacc
    10861 tgccgaccga ggcggcgcgc gtcaaaatag aggccgtcgg caacatcttc ttcgacatct
    10921 cgaacgccaa tttcaccatc aagcaggcgg tgggccgcgt cgcgagcatc tccgtcagct
    10981 cgctcactaa cggctgcacg cctgagctac aaggcaaggt ggcgctcgaa gcgccggcgc
    11041 ccgccggcgg cacggtcgtc aacatcaccg agaaccaccc cgcggccgag ttcccggcgg
    11101 ccgtcttcat ccccgaaggg cagttgtcta agaccttcaa gtacacggtc tcgccggtgg
    11161 ccgagcgtgt gagcgggaca atcgaagcct cttcgggcgg c
//
LOCUS       DASPKR010000294         3386 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_684499, whole genome shotgun sequence.
ACCESSION   DASPKR010000294 DASPKR010000000
VERSION     DASPKR010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3386)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3386
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_684499"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            429..1073
                     /locus_tag="VD968_08190"
     CDS             429..1073
                     /locus_tag="VD968_08190"
                     /EC_number="4.2.2.n1"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HYE14402.1"
                     /translation="MPFTRLLPSLRFFRNSFFAFVAFFLLTNLTDSPFTRVLAPVQAK
                     SVVVENYVPADMPTSGDHSLDRVILDAGKRHGVDPRLLHAVIWQESKYKATAVSHAGA
                     QGLMQLMPPTAKRFNCEDSSDPAQNIEAGTKYLRWLLKRFNGDVVLALAGYNAGEGSV
                     DKYAGVPPFNETQNYVRIITGRYGKTYHPLLAPEEAVAYFRLAPSPAEELALGK"
     gene            1292..>3386
                     /locus_tag="VD968_08195"
     CDS             1292..>3386
                     /locus_tag="VD968_08195"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HYE14403.1"
                     /translation="MSSQRITTGTTVQALSLERKMRMHEAREAIINRLAPEIHSEIDL
                     DKFLTAVVAELGRMMGVDRCDVLQLTRAGELRISHEWRAAPDVPSSLGTSFPVDLAQL
                     AGRFNLSRPVRIDDTSAPNLDPKVALLPASLGTRSLLIVPVVLDGNVLGLVGLHATRS
                     ARRWEDEEVAFLQSIARQIAVGYQYARLFTDKQREAQRTRALLEIANLLNARSDFGEL
                     TSHVLERANELVGADYCALGVVEPSGKSISLAAFKAAPHAATARVRELIESHGQSIDI
                     SAFPAVMELLAEPKTLRVIDSTLPEPVRFAFNATLGGRAALVAPVRIGEQTFGLLGFV
                     WSQPREVFDEHEVALVEGIAVQIGTALERDHLTAEVMRLRNVLHERRAEDRIIGQAPA
                     IRRAIELAFNVADTQTSVLIQGESGTGKELLANLIHYNSRRKEGPYIKLNCGAIPETL
                     LESELFGHERGAFTDARQRRRGRFEEADGGTLFLDEIGEMSLSAQVRLLRVLQDGEFT
                     RVGGSEVSKADVRVIAASNVDLARAVEQGTFRRDLFYRLSVFPIVLPPLRERREDVHT
                     LVIHFLEHYKQKTGRFISGISRQALRALVGYDWPGNVRELENAVERAVIIASGRQIEL
                     DDLPEQISRTVVEERSRTRDERERAAAEGRNVVLEISVPATIDEIERRAIEATLDYTG
                     GDKTRAARALGIGRKT"
BASE COUNT          603 a         1184 c         1041 g          558 t
ORIGIN      
        1 tgcggcccca tgcgtccgcg cccgctacac caaattgact cgaaaaaaaa ttccgcccac
       61 gagaggtttt ttgtctccct tcggtacgcg gccgaaacgc tcgcgcccgt aaagtggcgt
      121 tcacggtgag tggttttggg ggcaagcata ctcgcctcag cgacttaggg ctgtttgatt
      181 taaatgcata catttcaatg agttagctgg aacgtttcaa tccgccgaaa gcaaccgaga
      241 aggcccctca cccatcttac tcccggtttc gacgaggctg ctctttgaga gtgtgacgcc
      301 cgatcgtttc caccatgcgt agcccccaac cccgtgcatc gcaggcgatg tgcaattagt
      361 aatcgcccga cctcgctggc cgactagcga acgcagaggt cactagctca catggagaac
      421 gaccgagaat gccctttacc cgactgcttc ccagtctgcg ctttttccgc aactccttct
      481 tcgccttcgt ggcctttttc ctactgacga atttaaccga cagtcctttc acgcgcgtgc
      541 tcgcgcccgt gcaagccaag tctgttgtcg tggagaacta cgtccccgcc gacatgccca
      601 cgtcgggcga ccattcgctc gaccgcgtca tactcgacgc cggcaagcgc cacggcgttg
      661 acccgcgcct gctgcacgcc gtcatctggc aggagtcgaa gtacaaggcg acggccgtct
      721 cgcacgcggg cgcgcagggc ctcatgcagt tgatgccgcc gaccgccaag cgcttcaact
      781 gcgaggactc ttccgaccca gcgcagaaca tagaggccgg cacgaagtac ctgcgctggc
      841 tgctcaagcg cttcaacggc gacgttgtgc tcgcgctcgc aggctacaac gcgggcgagg
      901 gctcggttga caagtacgcc ggcgtgccgc ccttcaacga gacgcagaac tacgtgcgta
      961 tcatcacggg ccgctacggc aagacatacc acccgctgct cgcgcccgag gaggccgtcg
     1021 cctacttccg cctcgccccc tccccggccg aggagcttgc gctggggaag taaaaacagg
     1081 ggctcagaga ccagaggctg ggggccggtt aggaatcatc tcctaaccgg cccccagcct
     1141 ctagtctcta gccccttttg tgttatgatt cgcgcccggc aaaaaacctt actgcccgaa
     1201 gcgcgagtca gaaactaccg ctctcctccg actcgggaca agcgccgaaa cacaagcggg
     1261 cgggaatctg ggcagggaga cttacggggc tttgtcttct cagcgcatca ctacggggac
     1321 gaccgtgcag gcgctctcgc tcgagcgcaa gatgcgcatg cacgaggcgc gcgaggccat
     1381 catcaaccgc ctcgcgcccg agattcactc cgagatagac ctagacaagt tcctcacggc
     1441 cgtcgtcgcc gagctgggcc ggatgatggg cgttgaccgc tgcgacgtgc tgcaactcac
     1501 gcgcgccggc gagctgcgca taagccacga gtggcgcgcc gcgcccgacg ttccctcctc
     1561 gctcggcacc tccttccccg tggacttggc gcagctcgcg ggccgcttca acctgtcgcg
     1621 cccggtgcgg atagacgaca cgtcggcgcc taacctcgac ccgaaggtgg ccctccttcc
     1681 cgcgagcctc ggcacgcgct cgctcctcat cgtccccgta gtgctcgacg gcaacgtcct
     1741 cggcctggtc ggcctgcacg cgacgcgctc agcgcgccgc tgggaggacg aggaagtcgc
     1801 cttcctccag tcaatcgcgc ggcagatagc ggtcggctac cagtacgcgc gcctcttcac
     1861 ggacaagcag cgcgaggcgc agcgcacgcg cgctctgctg gagattgcga acctcctgaa
     1921 cgcccgctcc gacttcggcg agctgacctc gcacgtgctc gagcgcgcca acgagctggt
     1981 cggcgccgac tactgcgccc tcggcgtcgt cgagccgtcg ggcaagtcca taagcctcgc
     2041 cgccttcaag gccgcgccgc acgccgccac cgcgcgcgtg cgcgagctga tcgagtcgca
     2101 cggccagtca atagacatct ctgccttccc ggccgtcatg gagcttctgg ccgagcctaa
     2161 gacgctgcgc gtaattgact cgacactccc ggagcccgtc cgcttcgcct tcaacgccac
     2221 gctcggcggc cgcgccgccc tggtcgcgcc cgtccgcata ggcgagcaga cgttcggcct
     2281 gctgggcttc gtctggagcc agccgcgaga ggtattcgac gagcacgagg tcgcgctcgt
     2341 ggagggcatc gccgtgcaga tagggacggc gctcgagcgc gaccatctga cggccgaggt
     2401 gatgcggctc cgaaacgtgc tgcacgagcg gcgcgccgaa gaccgcatca tcgggcaggc
     2461 gccggccata cgccgcgcaa tcgagctcgc ctttaacgtc gccgacacgc agacctccgt
     2521 gctcatacag ggcgagtcgg ggacggggaa ggagctttta gccaacctca tacactacaa
     2581 ctcgcgccgc aaggaggggc cttacatcaa gctcaactgc ggcgccatcc cggagaccct
     2641 tctagagtcg gagctgttcg gccacgagcg cggcgccttc accgacgcgc ggcagcggcg
     2701 gcgcggccgc ttcgaggagg cggacggcgg caccctcttc ctggacgaga taggcgagat
     2761 gagcctgtcc gcccaggtgc ggctgctgcg cgtccttcag gacggcgagt tcacgcgcgt
     2821 cggcgggagc gaggtgtcga aggcggacgt gcgcgtcatc gccgcctcga acgttgacct
     2881 ggcgcgcgcc gtcgagcagg gtactttccg ccgcgacctc ttctaccgcc tctcggtctt
     2941 ccccatagtg ctcccgcccc tccgcgagcg ccgcgaggac gtgcacacct tagtcataca
     3001 cttcctcgag cactacaagc agaagaccgg ccgcttcatc tcggggatat cgcgtcaggc
     3061 cctgcgcgcg ctcgtgggct acgactggcc cggcaacgtg cgcgagctgg agaacgccgt
     3121 cgagcgcgcc gtcatcatcg cctcggggcg gcagatagag ctggacgatt tgccggagca
     3181 gataagccgc accgttgtcg aggagcgctc gcgcacgcgc gacgagcgcg agcgcgcagc
     3241 ggcagagggg cgcaacgtag tgctcgagat aagcgtcccg gccacgattg acgagataga
     3301 gcgccgcgca atagaggcca cgctcgacta cacgggcggc gacaagacgc gcgccgcccg
     3361 cgccctcggg atcgggcgca agacgc
//
LOCUS       DASPKR010000295         8261 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1719210, whole genome shotgun sequence.
ACCESSION   DASPKR010000295 DASPKR010000000
VERSION     DASPKR010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8261)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8261
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1719210"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..839
                     /locus_tag="VD968_08200"
     CDS             <1..839
                     /locus_tag="VD968_08200"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HYE14404.1"
                     /translation="GLTQSERALPEDGDWRRALMGDAMALAGAHSRAAREAARGGETV
                     VKKENSRRVVAVPLVSGERVAGVLEAVREGERARPFSQSDASLLSALSLPLTAALSNS
                     ARVAEAERLSQTDDLTKLHNARYLRQYLVGELKRARRYGSVVTAVFLDLDDFKQINDR
                     HGHLVGSHVLMEMAAVILRSVRDTDSVARYGGDEFVVVLPETDMAHGLQVAERVRERI
                     AGQVFTGGRGLALRLTASFGVASFPDHAQSPQRLISAADTAMYEAKAARKNCVRFAAR
                     EG"
     gene            1146..2192
                     /locus_tag="VD968_08205"
     CDS             1146..2192
                     /locus_tag="VD968_08205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002621977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HYE14405.1"
                     /translation="MAFKSLFSLFSSDLAIDLGTANTLVYAKGRGIVVSEPSIVAINK
                     VTNTPEAVGKEAKEMLGRTPGNIVAIRPMKDGVIANFEVTEKMLQHFIRKAHNGKTWV
                     SPRVVIGIPSEITQVERRAVEDSAYRAKASEVYLVEEAMCAAIGAGLPITEPHGNMIV
                     DIGGGTTDIAVISLSGIVYSRAVRVAGNEMDESITQYIKRKYNLLIGERTAEAIKIEL
                     GSGFPLDEPLTMDVRGRNLIEGIPKTITISDEEVREALADSVATIVNAVRVALERTPP
                     ELSADIVERGIVLTGGGALLKNLDKRLSIETGLPVSIADDPLSSVVLGAGKMLSDFDL
                     LKRVKWDNTLTSGM"
     gene            2241..3140
                     /gene="mreC"
                     /locus_tag="VD968_08210"
     CDS             2241..3140
                     /gene="mreC"
                     /locus_tag="VD968_08210"
                     /inference="COORDINATES: protein motif:HMM:TIGR00219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HYE14406.1"
                     /translation="MVRSTQKEIRQRAPVWLLVLLAVNFGLMSWDAKDAETKQRVVRV
                     WAQGALSPFQRGVTGVGGAGLNVFRRLGRMRAAEAEAEALRARLSAAENELRDARQAG
                     DENERLKRLLAFTEGAGYETVTARVIARDPSVWFNSLIINRGTAHGVELDMPVATPEG
                     IVGRVVGVGPLTSQVMLLTDERAAAGAVVGQLGQSNAIGSVRGFGKNGLLEMRYVSGL
                     ETVNLGDYVVTTGQDRIYPPGLNVGLVVEVTPGSATTPHVIKVKPGARLDSLQEVAVL
                     KYKAPQRTAPEKTLPNVDKGRAK"
     gene            3166..3708
                     /gene="mreD"
                     /locus_tag="VD968_08215"
     CDS             3166..3708
                     /gene="mreD"
                     /locus_tag="VD968_08215"
                     /inference="COORDINATES: protein motif:HMM:NF016019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HYE14407.1"
                     /translation="MRLKLAVFVGLAVVLQSSLRALWPPMAYADLPLIVVVYFSLKRD
                     AVMAVMIGTVAGLATDVLSNGLLGAGGFSKTLTAYLLASLVQRVMIDNPLARIPVLAG
                     AAAFDMLVFVAVHRLLGQQVTPMGGSMVETAAYRLIWTTVVGTALAFLLDTLLGENAS
                     RRQFAFRRRIARRGLTRRKY"
     gene            3773..5671
                     /gene="mrdA"
                     /locus_tag="VD968_08220"
     CDS             3773..5671
                     /gene="mrdA"
                     /locus_tag="VD968_08220"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR03423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HYE14408.1"
                     /translation="MKFEDDTQNLRLRMNVIHGLTLVILVVLGVRLYFLQVVRGDYYA
                     ERAENQRVRLLRIPAPRGAIFDRSGKLLVDSRSTYNIILSREDMKGKDWGSLVAPLSD
                     GLAVDPDLLRERFEEMKSQPAFEEVSVKEGAGPADIAWVEAHMLEFPMLQVREQPQRR
                     YPENGTLAHVLGYVGEISPEQLKQPTYADYAENPYHPGAIIGQEGLERTYDRYLRGRD
                     GYRKVEVDSRGRIQRELEVVPPQPGQDIVTTIDLEMQLAAEEQLRNSPSKRGVIVAMN
                     PNDGEILAMASYPTFDPNLFSQRIGTPEGRREARALMKDPLTPLYNRAIRGRYPPGST
                     WKIPMAVSGLMQGAITVKHSNLVCGGGITIGNKFTRCMGHHGSPDVRTAIKHSCDGYF
                     YRLGLKMELEGIMEMVDDFDLDKKTGVDLPHELKSWTPSREFKARWNPRDPQWRDIDT
                     VYASFGQVYDFVTPLAMLRAQAGIANGGRLYVPHLLKEARPVSEVGPFPARPRQTFER
                     PDPKVLRIPAETHQIVVEGMWAVVNEGGGTGGAARIEGFDVAGKTGTAQVVSLGKDVG
                     KNKDHSWFVSFAPARDPEVSMIALIENVGFGGKFAAPAVHAVYDAYLAKAHPELAPKP
                     AQQEIAKR"
     gene            5736..6857
                     /locus_tag="VD968_08225"
     CDS             5736..6857
                     /locus_tag="VD968_08225"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HYE14409.1"
                     /translation="MVAILETRRLRDFDWLLTGLAVAIAVFGTWQIYNAQPEMGYWKK
                     QLIGLGVSLVVMLTVAFTDYRKLVNIAPIFYAFGLLLLVIVLVPGIGLKINGQRAWIG
                     VPGLGQFQPSEFMKIPTVLMLARYFGRPRQSALTVKEILMGGMILALPVVLILLEPDA
                     GQALTYFPLLAVVLFLSSIRMWLVIASLVVAAVGVPAAYVVGVETGIVKAYQQKRIEV
                     ILDPENADRRDIGYHTWQSIITVGKGGLTGSDAAGEASQSRLKYLPEPHTDFIYAVTA
                     ENTGFVGSVLLLLAYAVLLTKLIHGARRAPDRTGMLVIMAIVGGLAFQILINVGMALG
                     ILPVIGVPLPLMSAGLSAILATSVAIGFAISIRLRRFVN"
     gene            7479..>8261
                     /locus_tag="VD968_08230"
     CDS             7479..>8261
                     /locus_tag="VD968_08230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14410.1"
                     /translation="MPKEMIVSVNGREKKIAILENGRVTEFYIERGESSQGIVGNIYK
                     GRVMRVLPGMQSAFVDIGLERDAFLYVSDFFDEEEEFERIVVDKKRSEGADDESASRA
                     AAERIERARIERERQMEAAQESAQESAEPAAALGVEEEEEEATAPEVGGAVAEAHARG
                     AEEAEEGAGRRGRDRRKRRRERGGTAEQPREAAAASVGAGAGVEGVETPFVAGADSFE
                     RVVDEDEAAAEMGSMFKDARLQERLSDQTRAVEFDIEPTTAAV"
BASE COUNT         1413 a         2813 c         2751 g         1284 t
ORIGIN      
        1 gtgggcttac acagagcgag cgcgccctgc ccgaagacgg cgactggcgg cgggcgctga
       61 tgggcgacgc gatggcactg gccggcgcac actctcgcgc ggcccgcgag gcggcgcgcg
      121 ggggcgagac cgtcgtcaag aaggagaact cgcgccgggt cgtcgccgtc ccgctcgtat
      181 cgggcgagcg cgtcgccgga gtcctcgaag ccgtccgcga gggcgagcgg gcgcgcccct
      241 tctcgcagtc ggacgcctct ctgctctcgg ccctgagcct tccgctcacg gccgcgctct
      301 cgaactcggc ccgcgtcgcc gaggccgagc ggctctcgca gaccgacgac ctgacgaagc
      361 tccacaacgc gcgctacctg cgccagtacc tggtcggcga gctcaagcgc gcgcgccgct
      421 acggctcggt cgtcacggcc gtcttcctcg acctcgacga cttcaagcag ataaacgacc
      481 ggcacggcca cctcgtcggc tcgcacgtcc ttatggagat ggcggccgtc atactgcgct
      541 cggtgcgcga cactgactcg gtggcgcgct acggcggcga cgagttcgtc gtcgtcctgc
      601 ccgagaccga catggcgcac ggccttcagg tcgccgagcg cgtccgcgag cgcatcgcag
      661 ggcaggtctt cacgggcggg cgcggcctcg cgctgcggct cacggcctcc ttcggcgtcg
      721 cctccttccc agaccacgcg cagtcgcccc agcggctcat ctccgcggcc gacacggcca
      781 tgtacgaggc caaggccgcc cgcaagaact gcgtccgctt cgccgcccgc gagggctgag
      841 gcggcgccac tgtcgcccgg ccctaccccc tgaaaaaagt tgtggacatt tccgcgccgc
      901 tcctgtaaag cattactacg aaccagccgg aagacacccc cccgcttgga agaggttcaa
      961 ggcacatctc taagggagcc cccgaggccc ccgcccgggc acgtcaaccg aaggtttcgg
     1021 ccgatagcca accggccctt tttcgttgta tctttgtggg ttcgttccgc aagggcagcc
     1081 gaaagctgtg gggccgtgcg ccctcggcgg tcatacttta gacaggggca atcgcagaaa
     1141 ctcgaatggc atttaagtca ctcttcagcc ttttttccag cgatctcgca atagacctcg
     1201 gcacggccaa cacgctcgtt tacgccaagg ggcgcggcat cgtcgtctcc gagccctcca
     1261 tcgttgccat caacaaagtc accaacaccc cggaggcggt cggcaaggag gccaaggaga
     1321 tgctcggccg cacgcccggc aacatcgtcg ccatccggcc gatgaaggac ggcgtcatcg
     1381 ccaacttcga ggtgacggag aagatgctcc agcacttcat ccggaaggcc cacaacggca
     1441 agacgtgggt cagcccccgc gtcgtcatcg gcatacccag cgagataacg caggtcgagc
     1501 gccgggccgt cgaggactcc gcctaccgcg cgaaggcttc ggaggtctat ctggtcgagg
     1561 aggccatgtg cgcggccatt ggcgctggcc tgcccatcac cgagccacac ggcaacatga
     1621 tcgttgacat aggcggcggc acgaccgaca tcgccgtcat ctccctttcg ggcatcgtct
     1681 attcgagggc cgtccgcgtc gccggcaacg agatggacga aagtatcacg cagtacatca
     1741 agcgcaagta caacctgctc atcggcgagc gcaccgccga ggccatcaag atagagctgg
     1801 gctcgggctt cccgctcgac gagccgctca ctatggacgt gcgcggccga aacctcatcg
     1861 agggcatacc caagaccata accatctcgg acgaggaggt cagggaggct ctggccgact
     1921 cggtcgcgac catcgtcaac gccgtgcgcg tggcgctcga aaggactccg cccgagcttt
     1981 cggccgacat cgtcgagcgc ggcatagtcc tgacgggcgg cggggcgctt ctgaagaacc
     2041 tggacaagcg gctctccata gagacggggc ttcccgtctc gatagccgac gacccgctct
     2101 cctcggtcgt gctcggcgcc ggcaagatgc tctccgactt cgacctcctc aagcgcgtca
     2161 agtgggacaa cacgctcacg agcgggatgt aaaaaacggg atgacggcct gaaggcttca
     2221 cgcccgccgc tgttttagag atggttcgga gcacgcagaa ggagatacgg cagcgcgcgc
     2281 ccgtgtggct gctcgtcctg ctcgccgtaa acttcggcct gatgagctgg gacgcgaagg
     2341 acgccgagac gaagcagcgc gtcgtgcgcg tctgggctca gggggctctg tcgcccttcc
     2401 agcgcggcgt gacgggggtt ggcggggcgg gcctgaacgt cttccgccgg ctcgggcgta
     2461 tgcgggcggc cgaggccgag gccgaggcgc tccgcgcgcg gctctccgcg gccgagaacg
     2521 agctgcgcga cgcccgccag gcgggcgacg agaacgagcg cctcaagcgc ctgctggcct
     2581 tcacggaggg cgccggctac gagactgtga cggcgcgggt gattgcgcgc gacccttcgg
     2641 tctggttcaa ctccctcata atcaaccgcg gcacggcgca cggcgtcgaa ctggacatgc
     2701 cggtcgccac gcccgagggt atagtcggcc gcgtcgtcgg cgtcgggccg ctgacctcgc
     2761 aggtcatgct cctgacggac gagcgcgcgg cggccggggc cgtcgtgggg cagttggggc
     2821 agtcgaacgc gataggctcg gtgcggggct tcggcaagaa cgggctcttg gagatgcggt
     2881 atgtctcggg gcttgagacg gtcaacctgg gcgactatgt ggttaccacg gggcaagacc
     2941 gtatctaccc accgggactc aacgtcgggt tggtcgtaga agtgacgccg ggctcggcca
     3001 cgaccccgca cgtcataaag gtcaagccgg gcgcccggct cgactccctt caggaggtgg
     3061 ccgtgctcaa gtacaaggcg ccgcaacgca cggcgcccga gaagacgctg cccaacgtgg
     3121 acaaggggag agcgaagtga cgccccgtca ctcgccgccg cttttatgag gctgaagctc
     3181 gcggtcttcg tggggctggc ggtcgtcctg cagtcgagcc tgcgggcgct gtggcctccg
     3241 atggcctacg ccgacctgcc gctcatcgtc gtcgtctatt tctcgctcaa gcgcgacgcc
     3301 gtgatggccg tgatgatagg gacggtggcg ggcctcgcga ccgacgtgct ctcgaacggg
     3361 ctcctgggcg cgggcggctt ctcgaagacg ctgacggcct acctgctcgc ctcgctcgtt
     3421 cagcgcgtga tgatagacaa cccgctggcg cgcatacccg tcctggctgg cgccgcggcc
     3481 ttcgacatgc tggtcttcgt cgccgtgcac cgcctgctcg gccagcaggt gacgccgatg
     3541 ggcgggagca tggttgagac ggccgcctac aggctaatct ggacgaccgt cgtcgggacg
     3601 gcgctcgcct tcctgctcga cacgctgctc ggcgagaacg ccagccgccg ccagttcgcc
     3661 ttccgccgcc gcattgcgcg ccgcggcctg actcgtagaa aatactgaag gcgcgcgcgg
     3721 aacccggcgc ccggcgcccg acatctaaca gccaggctcc cttctctgcc ttatgaaatt
     3781 cgaggacgac acccaaaacc tgcggctgcg gatgaacgtc atacacgggc tgacgctggt
     3841 catactcgtg gtgctgggcg tccgcctcta cttcctacag gtcgtgcgcg gagactacta
     3901 cgccgagcgt gcagagaacc agcgcgtgag gcttctgagg attccggccc cgcgcggcgc
     3961 catcttcgac cgctcgggca agctcctggt tgactcgcgc tcgacctaca acatcatcct
     4021 ctcgcgcgag gacatgaagg ggaaggattg gggctcgcta gtcgccccgc tctcggacgg
     4081 cctcgccgtt gacccagacc ttctgcgcga gcgcttcgaa gagatgaagt cgcagcccgc
     4141 cttcgaggag gtctccgtca aggagggcgc ggggccggcc gacatcgcct gggtcgaggc
     4201 gcacatgctc gagttcccca tgctccaggt gcgcgagcag ccgcagcgcc gctaccccga
     4261 gaacggcacg ctcgcgcacg tgctcggcta cgtcggagag ataagccccg agcagctcaa
     4321 gcagcccacc tacgccgact acgcggagaa cccctaccac ccgggcgcca taatcgggca
     4381 ggagggcctg gagcgcacct acgaccgcta cctgcgcggc cgcgacggct accgaaaggt
     4441 cgaggtggac agccgcggcc gcatacagcg cgagctggag gtagtccccc cacagccggg
     4501 gcaggacatc gtcacgacga tagacctcga gatgcagctc gcggccgagg agcagctgcg
     4561 gaactcgccc tcgaagcgcg gcgtcatcgt cgccatgaac ccgaacgacg gcgagattct
     4621 ggcgatggcc tcgtacccga ccttcgaccc gaacctcttc tcgcagcgca taggcacgcc
     4681 cgagggccgg cgcgaggccc gcgcgctgat gaaggacccg ctcaccccgc tctacaaccg
     4741 ggcgatacgc gggcgctacc cgccgggctc tacgtggaag ataccgatgg cggtgtcggg
     4801 gctgatgcag ggcgcgataa ccgtgaagca ctccaacctg gtgtgcggcg gcggcatcac
     4861 catcggcaac aagttcacgc gctgcatggg ccaccacggc tcgcccgacg tgcgcacggc
     4921 catcaagcat tcgtgcgacg gctacttcta ccgcctcggc ctcaagatgg agttggaagg
     4981 cataatggag atggttgacg acttcgacct cgacaagaag acgggcgttg acctgccgca
     5041 cgagcttaag agctggactc cgtcgcgcga gttcaaggcg cgctggaacc cgcgcgaccc
     5101 gcagtggcgc gacatcgaca ccgtctatgc ctccttcggg caggtctatg acttcgtcac
     5161 gccgctcgcg atgctgcgcg cgcaggccgg catagccaac ggcggccgcc tctacgtgcc
     5221 gcaccttttg aaggaggcca ggcccgtcag cgaggttggg ccgttcccgg cgcggccgcg
     5281 ccagaccttc gagcgccccg acccgaaggt gctacgcatc ccggccgaga cgcaccagat
     5341 cgtggtcgag ggcatgtggg cggtcgtcaa cgagggcggc ggcacgggag gcgccgcgcg
     5401 catagagggc ttcgacgtgg cggggaagac cggcacggcg caggtcgtct cgctcggcaa
     5461 ggacgtgggc aagaacaagg accactcctg gttcgtctcc ttcgcgccgg cccgcgaccc
     5521 cgaagtctcc atgatagcgc tcatcgagaa cgtcggcttc ggcggcaagt tcgcggcccc
     5581 ggccgtccac gccgtctatg acgcctacct cgcaaaggcg caccccgaac tggcgcccaa
     5641 gccggctcag caggaaatag cgaaaagata gagactgggg gctaggggct agttatgaac
     5701 tcttttacta gcctctagcc tctagcccct gaatcatggt tgcgatactc gaaacaagac
     5761 ggctgcgcga tttcgactgg ctgctgacgg gcctggcggt ggctatcgcc gtcttcggca
     5821 cgtggcagat ttacaacgcg cagcccgaga tgggctactg gaagaagcag ctcatcggcc
     5881 tcggcgtctc gctcgtcgtg atgctgacgg tcgccttcac ggactaccgc aagctcgtta
     5941 acatcgcgcc gatcttctac gccttcgggc tgctcctact cgtcatcgtg ctcgtgcccg
     6001 gcatcgggct gaagataaac gggcagcggg cgtggatagg agtccccggc ttgggccagt
     6061 tccagccgtc ggagttcatg aagataccga cggtgctgat gctggcgcgc tacttcggcc
     6121 gcccccgcca gtccgcgctc acggtcaaag agattcttat gggcgggatg atactggcgc
     6181 tgcccgtcgt gctgatactc ctggagccgg acgcgggcca ggccctcacc tacttcccgc
     6241 tgctcgccgt cgtcctcttc ctctcctcga tacgtatgtg gctcgtcatc gcttcgctcg
     6301 tcgtcgcggc tgtgggagtc cccgcggcct acgtcgtcgg cgtcgagacg ggcatcgtga
     6361 aggcgtacca gcagaagcgc atagaggtca tactcgaccc ggagaacgcc gaccggcgcg
     6421 acatcggcta ccacacctgg cagtccatca tcacggtcgg caagggcggg ctgaccggct
     6481 ccgacgccgc gggcgaggca tcgcagagcc ggctcaaata cctgcccgag ccgcacacag
     6541 acttcatcta cgcggtgacg gccgagaaca caggcttcgt aggctccgtg ctgctgcttc
     6601 tggcctacgc cgtgctgctc accaagctca tacacggcgc gcgccgtgcc cccgaccgca
     6661 cggggatgct cgtcatcatg gctatcgtcg ggggcttggc cttccagata ctcatcaacg
     6721 tcggcatggc gctcggcatc ctgcccgtca taggggtgcc tctgccgctc atgagcgccg
     6781 gcctctcggc catactcgcc acctccgtcg ccatcggctt cgccatcagc atcaggctgc
     6841 gccgcttcgt caactgaagc cggggacggc tctttcacct ttcccgctcg ccttttcgcg
     6901 cggcggtcgt ttatactggc gctgcctgtc cacccgcctg aacttaaacc ttccggcacg
     6961 gcgcgcgaaa caatccggct tcttttctgc ggccggcgcg ccttcgagtt gacggggcaa
     7021 ggatttcgag gggccgacgg gcgcctcaag ttgaaacgtt tttgccgagc cgccgggcgg
     7081 cgtgccggga gccgtcgcgc ttcgacgaga aggcgcgcac tccccgcccc gccgggaagg
     7141 ctgcgaaggc cctacgctgg aatcagcgta aggcccgacg cgccggaggc ggcccgagca
     7201 gtcggagatt tccggtgaac agtcccgaac gcttcccgac ggaagggggc cagtcccctg
     7261 ccgtcggcgc ggcacgagga gcggtgcagg gcgaaagccc tgccgcgcca gcgccgcggt
     7321 gtgcctcccg gcccgccgcg cgcggcggcg cgcccctcag gactgctcgc cctaccgtct
     7381 ccggcccacc caaacataca cacaccaaca cggcggggag cgtgcgcgcc ttacgagcgc
     7441 acgcggcccg cgccgactag ggggatagtt tttcacagat gccgaaagag atgattgtca
     7501 gcgtcaacgg gcgcgagaag aagatcgcca ttctggagaa cggccgcgtc acggagttct
     7561 acatcgagcg gggcgaatcg agccagggca tagtcggtaa catttacaag gggcgcgtca
     7621 tgcgcgtcct gccgggcatg cagtcggcct tcgtggacat tgggctcgag cgcgacgcct
     7681 tcctatacgt ctccgacttc ttcgacgagg aggaggagtt cgagcgcata gtcgtggaca
     7741 agaagaggag cgagggggcg gacgacgagt cggcctcgcg cgccgcggcc gagcgcatcg
     7801 agcgagcgcg catagagcgc gagcggcaga tggaggccgc gcaggaatcg gcgcaggaat
     7861 cggccgagcc ggccgcagcc ctcggggtcg aggaggagga agaggaggcg accgcgcccg
     7921 aggtcggggg ggccgtcgca gaggctcacg cccgcggggc agaggaggcg gaagagggcg
     7981 ccggtcgccg cggccgcgac cggcgcaagc gcaggcgcga gcgcgggggt acggccgagc
     8041 agccgcgcga ggccgcggcc gcctcggtgg gcgccggggc cggcgtcgag ggcgtcgaga
     8101 cgccattcgt cgcgggcgca gactccttcg agcgcgtcgt ggacgaggac gaggccgccg
     8161 ccgaaatggg ctcgatgttc aaggacgccc gccttcagga gcgcctgagc gaccagaccc
     8221 gcgccgtcga gttcgacatt gagcccacga cggccgccgt c
//
LOCUS       DASPKR010000296         9511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_684705, whole genome shotgun sequence.
ACCESSION   DASPKR010000296 DASPKR010000000
VERSION     DASPKR010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9511)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9511
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_684705"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..296)
                     /locus_tag="VD968_08235"
     CDS             complement(<1..296)
                     /locus_tag="VD968_08235"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HYE14411.1"
                     /translation="MLMPDTTVRLQRKCGCGECGECAGGPPNVQLRAAAGSEPRDAQP
                     AVDYALNSGGRPLDAETLSFMETRFGHDFGGVRVHTGERAAESARSLGARAYTVG"
     gene            complement(568..2451)
                     /locus_tag="VD968_08240"
     CDS             complement(568..2451)
                     /locus_tag="VD968_08240"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HYE14412.1"
                     /translation="MLRSPGQALDATTRGFFEPRFRQDFSRVRVHTDEQAAASARAVN
                     ALAYTVGTHVVFGAGRYAPRTGEGSRLLAHELAHVVQQGNAGAAPKQDVAAVQRQTPP
                     PAGPVRAATPEERREFARIAAEFLRGQGTHFALQPDRDISEILTPMRTTAQNALSVIA
                     NDPAATAVADDVRSAYRAAVREALVARTRTRSGSVRTPPTLQELYEQRRDEILPFGLP
                     QADVDTGAAELSAELEAPLPARPTAHQSARHAAVTAARQRLRVITSQVVIGIDDLFST
                     QGGTTTVPLPANTTARFSSTIPSGLQRGLTSVAASLVQNGTLTPNTIVMLALDLTQFG
                     GSYDAYRFTRLDLGTLGVEILIERQGAIGVEGLRAEQRQQLQDRFDRMGFRRTGFSQG
                     EFDQVLIGLGEIPDAQLTALGALRFTRQRGASATTPSAAAEYDQATHTVNVFDNAFTA
                     GRARMGRAGRVLTFAAHAVVHEVGHAHDLSALRTTGASRDRAQAALLAEFGTGGGNFR
                     IPAPGAPDRARFDQLMSALTAAQTAETSARSLSGARWTTGGTATVTDALAAGARQPAF
                     RQAALQDGGPAGRQMPTTYPNPVSVWQEYFAESFALYQTAPDQLRRMRPNVFRFMQQQ
                     FPR"
     gene            complement(2455..5190)
                     /locus_tag="VD968_08245"
     CDS             complement(2455..5190)
                     /locus_tag="VD968_08245"
                     /inference="COORDINATES: protein motif:HMM:NF014600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HYE14413.1"
                     /translation="MQTRERESGGPAHDAQPAGSSRAPGTAPAASPPFPLYETLPGQL
                     SAGPRLQPKLTIGNPDDPFEREADGVAERVMRMPDTTVRLQRKCACGGAGGECEECAS
                     KPVSLQRRAAPHAEIDSAAPSIVGEVLRAPGQPLDASTRAFMEPRFGHDFGGVRVHTG
                     WRAEESARSVGALAYTVGQNVVFGAGQYAPETEGGQRLLAHELAHVVQQSSATGAPQV
                     RRTYRPNELMNPDGTPRRSNPVASGPDTNFYPASAASITGRRALVVAGIHGEEASAQA
                     LGAEADRQIASRTMATDFNTLFVPRANPGTGRAAGSGATRVPDLNREFGTNYTSPNPI
                     ANQISTMVSEFAPERVLSIHAISNRRLGGVFLDPIHSRRTLPAGATPAQQRAEDIASY
                     PAVGTAAERESAFTGDPRNLAAMEMTERMVVATNPAVGTAATPGNAPRAGFPASRRPG
                     TAAGASPNSLIYPLQGAMTGGVSLGVWLSGHGVPVVTIEVPGYRAGPSVWRNYLGGVR
                     EFLRIPAPTTTTTPTSTGTTTSPVVQPKLDPRRPGLSLSRAPGSVLQRQPAQITSANV
                     PRRRGRDAAYDTFMRQVYDAQVSIWTSRGAAYTHTVPSADLMTLAAGDSLPGRTIQFD
                     RNVGNAYLLPMLAHARTALSAARAAGDPLARNVTDIRVRSGYRPATEQLSIWNRFYDQ
                     YYTDTTTQRQALAGGEHGPDAVNFLANYINQRVFSPGYSPHQQGRTVDLTYLEGTTWA
                     TAETDAPNIATWRASWLFNWLQRNAASYAFLQNPNLNEPWHWEFNLNVAVNLLINQIR
                     AFLRRIFPFINWGGEEGPQPTPSETPPSETPRGDAGPIQPKLEVSQPGDPFELEADAV
                     AERVMRMPDTTVRLQRKCACGEGAGCEDCAHKSEGLQRRAAAAEHSQHNSAPDIV"
     gene            complement(5206..5589)
                     /locus_tag="VD968_08250"
     CDS             complement(5206..5589)
                     /locus_tag="VD968_08250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14414.1"
                     /translation="MARRDERQDGPEVRNARDVSRHGGETATVVGRYRAIEMPSKVPP
                     SPSESRPKDYAQLILEDGTVVYLESYNTPQARRPAAERERFDGKTVRVSGKLFRRMPA
                     SGESLVAPCVSGITEIAEEEEQPGA"
     gene            complement(5608..7317)
                     /locus_tag="VD968_08255"
     CDS             complement(5608..7317)
                     /locus_tag="VD968_08255"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HYE14415.1"
                     /translation="MPAVSLAAPPKLQGKLQISRPGDAYEREADSVAERIMRMPDTTV
                     RLQRKCACGGTCAECAEEGPRVQRRAAGGAEAAVSVPSAANIVPRSSSGQPLDAGVRA
                     FMEPRFGVDLGHVRVHTDAGAADSARQIGAHAYTIGRDIVFGRGRYAPGTSAGKSLLA
                     HELTHVIQQTGGAGGGGSPRISPAGPSVQRFTDFDTAAQSAGTSLGWAHPGTKALKVS
                     DDGQLAVEDLGWGHSKMSWAAPDKISSANSILKAQGSKVSLKTGPSTMTGSAPDSPKG
                     KTKTLNEVIPVEAATGNPLTLIAACMKACRQVMGIADTETTVPVIKGKSGTVEEFGKP
                     RTSFGAGGGSPDPTAPELWSEELFKKEFGSGLTRAEALKKYNDLPAADKEKFDKKYGI
                     NKFAVPTVGQGIAVGTEFDMPGFKAHKKLDPVSGTMVDVSTWNYHFATAILASGKDYV
                     SLENATGSTKPFWVWMYGPASKKQSFDEFQASTLGHGTKQTTLVVEPEKLTLGEINTA
                     DAPLVDAAGKLTKIAKGDKFKVIERPVVRDGDTFWKIKMTTGANVGLEGQMMQKYLKL
                     IKT"
     gene            complement(7496..9337)
                     /locus_tag="VD968_08260"
     CDS             complement(7496..9337)
                     /locus_tag="VD968_08260"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HYE14416.1"
                     /translation="MKAAMTATHERGGTGKEAAPRAPARAAAPCAQLYPIPFLPAVTP
                     LVTLSGPGRVLQPKLSVSRPDDPYEREADSVAERVMRMPDATVRLQRKCACEGTGEEC
                     ERCASKQPSAQRRAAPEATGDSGVSEAPAAVHDVLRSGGRPLDASARSFMESRFGHDF
                     GHVRIHTGAGASASAKALNARAYTVGSDVAFAAGEYAPETAPGRHLLAHELAHVLQQR
                     GGGGPLCKPVVGSPDDSAESEADNVADAVMRGGDVAVRLSPSSPVIRRACGYGNIVEP
                     PGCAAGDHAFVPGLRLFRFGQECDEFAPGQEAALVAYARAQAPTTLFELHGFTSVDGI
                     PRYNEILGCARAEKAKTVLTAAAPLGAGIAVSRIQSPTVNHGPTPGPTAERHVVGIRV
                     TTPAPPTPTPTPAPAAPTPRDQAIALADQDSAAITALFNPRRLLATGLFLQIYKCLTD
                     SIGAAFRRGEFEDPLWLARVNHATMTRLQQAFTAPNAEYQQAFLTCNLLDQCSDPNIG
                     IFERMGCNRALGGTATLVTFQRCTEDVGGVHLRVDLRDALRSVGCSSPVNARDYARVV
                     PLFQACNRAILSSSFPVIGGTVAQQIAIPRITEQRNAAWSAAGCPSP"
BASE COUNT         1280 a         3262 c         3339 g         1630 t
ORIGIN      
        1 ccgaccgtgt acgcgcgcgc gcccagtgag cgcgccgact ctgccgcgcg ctctcccgtg
       61 tgcacgcgca ccccgccgaa gtcgtggccg aagcgtgtct ccatgaagga cagagtctcg
      121 gcgtcgagcg gcctgccccc cgagttgagc gcgtaatcaa ccgcgggctg cgcgtcgcgg
      181 ggctccgacc ccgcggcggc cctgagctga acgttcggcg ggcctcccgc gcactcaccg
      241 cattcgccgc agccgcactt gcgctgaagg cgcacggtcg tgtcgggcat gagcataacg
      301 cgctcggcga cactctcggc ttcccgctcg aaggcgtcgc cggtgctgac cgtcctcggc
      361 ttggcctgcg cgcccgcctt acgtcccaga gtaacgagcg ggtgccggag cggcgcagga
      421 gaagagcgcg cggcgcggct gcccgcgcga ctcggagccg cacgcggggt cgcctccgtc
      481 gccgtccgtt cgcgtcgttt aggtgctgat cccacgcctg ttcgctcgat tcaacttcag
      541 tggtctcaag gtcagccgcc cggtcgctca acgcgggaac tgctgctgca tgaaccggaa
      601 gacgttgggt cgcatccgac gaagctggtc gggcgcggtc tggtacaaag cgaacgattc
      661 cgcgaagtac tcctgccaga cgctcacggg gttcgggtac gtcgtcggca tctggcgtcc
      721 cgccggcccg ccgtcctgaa gcgcggcctg cctgaaggcc ggctgccgcg cccccgccgc
      781 cagagcatcg gtgacggtgg cggtgccgcc cgtcgtccag cgcgcgccgg acagagaccg
      841 cgcgctcgtc tccgcggtct gcgcggctgt gagcgcgctc atgagctggt cgaaccgtgc
      901 gcggtcgggc gcgccggggg caggaatcct gaagttgccg ccgcccgtgc cgaactcagc
      961 cagcagcgcc gcctgcgcgc gatccctcga cgcccccgtg gttcgcagcg cgctcaggtc
     1021 gtgcgcgtgg ccgacctcgt gcacgaccgc gtgagccgcg aacgtgagca cgcggcccgc
     1081 acggcccatg cgcgccctgc cagcggtgaa ggcgttgtcg aagacgttga cggtgtgtgt
     1141 ggcctgatcg tattcggcgg cggcagacgg agtcgtcgcg gacgcgcctc tctgccgcgt
     1201 gaagcggagc gcgccgaggg ccgtgagctg cgcatcgggg atttctccca gcccgatgag
     1261 cacctgatcg aactcgccct ggctgaaccc ggttcggcgg aaacccatgc ggtcgaaacg
     1321 atcctgcaac tgttggcgct gctccgcgcg caagccctcg acgccgatgg ccccctgccg
     1381 ctcgatgagg atttcgacgc ccagagtgcc gaggtcgagg cgcgtgaagc ggtacgcgtc
     1441 gtaactgccg ccgaactgcg tgaggtcgag cgcgagcatc acgatcgtgt tgggcgtaag
     1501 cgtcccgttc tgcaccaagc tggccgcgac gctggtcagt ccgcgttgca ggcccgacgg
     1561 gatcgtgctg ctgaagcgcg cggttgtgtt cgccggcagg gggacagtgg tcgtcccgcc
     1621 ctgcgtggag aagaggtcgt caatgcctat cacgacttgc gaggtgatga cgcggagccg
     1681 ctgacgggcc gccgtgaccg cggcgtgacg cgcgctctgg tgcgccgtgg gtcgtgcggg
     1741 gagaggcgct tccagctcgg cgctcagttc ggcggctccc gtgtcaacgt ccgcctgcgg
     1801 caggccgaag ggcaagattt cgtcgcggcg ctgctcgtac agctcttgca gcgtaggcgg
     1861 cgtgcgcacg gagccgctcc tcgtgcgcgt gcgcgccacg agcgcctcgc gcacggcggc
     1921 gcggtaggcg cttctcacgt cgtcggcgac cgccgtggcc gcggggtcgt tggcgattac
     1981 cgagagcgca ttctgcgcgg tggtgcgcat cggcgtgagt atctccgaga tgtcgcggtc
     2041 gggctgcaag gcgaagtgcg tgccttgccc gcgcaggaat tcggcagcga ttctcgcgaa
     2101 ctcccgcctc tcctccggtg tagcggcgcg gacgggcccg gcaggcgggg gcgtctggcg
     2161 ttggacggcg gcaacgtcct gcttcggggc cgcgccggcg ttgccctgct ggacgacgtg
     2221 cgccagctcg tgcgccaaaa gccttgagcc ttcgcccgtc cgcggcgcgt agcgtcctgc
     2281 cccgaacacg acgtgcgtcc cgaccgtgta ggccagcgcg ttgaccgcgc gcgcggacgc
     2341 cgccgcctgc tcgtctgtgt gaacgcggac gcggctgaag tcctgccgga atcgcggctc
     2401 gaagaagccc cgcgtagtag cgtccaaagc ctgaccgggc gagcgcagca cttcctagac
     2461 gatgtcggga gcagagttgt gttggctgtg ctccgcggcg gcggcgcggc gttggaggcc
     2521 ctccgacttg tgcgcgcaat cctcacaccc cgcgccctcg ccgcacgcgc acttgcgctg
     2581 caagcgcacg gtcgtgtcgg gcatacgcat aacgcgctcg gccaccgcat cggcttcgag
     2641 ctcgaagggg tcgccgggct ggctcacctc gagcttaggc tgtatcggcc ctgcgtcgcc
     2701 gcgcggcgtt tcgctcggcg gggtctcact cggcgtcggc tgcggccctt cttcgccgcc
     2761 ccaatttatg aaggggaaaa tgcgtcggag gaaagccctg atctggttga tgagcaggtt
     2821 gactgcgacg ttgaggttga actcccagtg ccacggctcg ttcaggttcg ggttctgaag
     2881 gaaggcgtag gaggccgcgt tgcgctgcag ccagttgaac aaccaggagg cgcgccacgt
     2941 cgcgatgttc ggcgcgtcgg tctcggccgt cgcccaagtc gtgccctcaa ggtaagtcag
     3001 gtcaaccgtc cgcccctgct ggtgcgggct gtagccgggc gagaagacgc gctggttgat
     3061 gtagttggcg aggaagttga cggcgtccgg gccgtgctcg ccgcccgcga gggcttggcg
     3121 ctgcgtcgtg gtgtccgtgt agtactggtc gtaaaaccga ttccagatgc tcaactgctc
     3181 cgtcgcgggc ctgtacccgc tccgcacgcg tatgtcggtc acgttccgcg ctagagggtc
     3241 tccggccgcg cgcgccgcgc tcagggcagt ccgcgcgtgc gcgagcatcg gcagcaggta
     3301 cgcgtttccg acgttacggt cgaattgaat ggtgcggccg gggagcgaat cgcccgcggc
     3361 gagcgtcatc aagtcggccg aagggacggt gtgcgtgtag gcggccccgc gtgaagtcca
     3421 aatgctcacc tgcgcgtcgt acacctgccg catgaaggtg tcgtaggcgg cgtcgcgccc
     3481 gcgcctgcgg ggcacgttcg ccgacgttat ctgcgcgggc tggcgctgca agacggagcc
     3541 gggcgcgcgg ctcaggctca agccgggccg ccgcgggtcg agcttcggct gcacgaccgg
     3601 ggacgtcgtc gtgccggtcg aggtcggcgt cgttgtagtc gtcggggcgg gtatcctcaa
     3661 aaactccctg acgccgccga ggtagttgcg ccagacgctc ggccctgcgc ggtagccggg
     3721 cacttcgatg gtcacgaccg gcacgccgtg acccgagagc cacacgccga gcgagacgcc
     3781 gccagtcatc gctccttgca gcgggtagat gaggctgttc ggcgacgcgc ccgccgcagt
     3841 gccggggcgg cggctcgcgg ggaagcccgc ccgcggcgcg ttgccgggcg tggcggccgt
     3901 gccgacggcc gggttcgtgg ccaccaccat cctttcggtc atctccatcg cggccagatt
     3961 ccgcgggtcg cccgtgaagg cgctctcgcg ctcggcggcc gtgccgacgg ccgggtatga
     4021 ggcgatgtct tcggcgcgct gctgcgcggg cgttgcgccc gccgggagcg tgcggcgcga
     4081 gtggatgggg tcgaggaaga cgcccccgag ccgtcggttg ctgatggcgt ggatgctcaa
     4141 gaccctttcg ggggcgaact cgctgaccat cgtcgaaatc tgattcgcaa tcgggttcgg
     4201 gctggtgtag ttcgtgccga actcgcggtt caaatcgggg acgcgcgtcg ccccgctccc
     4261 ggcggcgcgg cccgtgccgg ggttcgcgcg cgggacgaag agcgtgttga agtccgtcgc
     4321 catcgtgcgc gaggcgattt ggcggtcggc ctccgcgccg agcgcttggg cgctggcctc
     4381 ttcgccgtgg atgccagcca cgacgagcgc acgccttccc gttatcgagg ctgcagacgc
     4441 ggggtagaag ttagtgtccg ggccgctcgc gactgggttg gagcggcggg gcgtgccgtc
     4501 ggggttcatc agctcgttcg gcctgtaggt tcgccgcacc tgcggcgcgc ccgtagccga
     4561 cgactgctgc acgacgtggg ccagttcgtg cgccagaagc ctctggccgc cctcggtctc
     4621 cggcgcgtac tgaccggccc cgaagacgac gttctgcccg accgtgtagg cgagcgcacc
     4681 gactgagcgc gccgactcct cggcccgcca gcccgtgtgc acgcgcactc cgccgaagtc
     4741 gtgcccgaag cgcggctcca tgaaggcgcg cgtggaggcg tccagaggct ggccgggcgc
     4801 gcgcagtacc tcgcccacga ttgatggggc cgccgaatca atttccgcgt ggggcgcggc
     4861 gcggcgctga aggctcacgg gcttactcgc gcactcctcg cactcgccgc ccgccccgcc
     4921 gcacgcacac ttacgttgca gcctgacggt cgtgtccggc atacgcataa cgcgctcggc
     4981 cacgccgtcg gcctcgcgct cgaacgggtc gtctgggttg ccgattgtga gcttgggctg
     5041 aagtctcggc cccgcgctga gctggccggg gagcgtttca tacagcggaa agggcggcga
     5101 ggccgccggc gccgtgccgg gcgcgcgcga ggagccggcg ggctgagcgt catgcgcggg
     5161 gccgccgctt tctctctccc tcgtttgcat cgccgctctc atagctcaag cgcccggctg
     5221 ctcctcttct tccgcgatct ccgtaatccc gctcacgcat ggggcgacca ggctctcgcc
     5281 gctggccggc atcctcctga agagcttccc ggagacccgc accgtcttgc cgtcgaagcg
     5341 ctcgcgctcg gcggccggcc tgcgcgcctg gggcgtgttg tacgactcga gatagacgac
     5401 ggtgccgtct tcgagaatta gctgcgcgta gtccttcggc cgcgattcag acggcgacgg
     5461 cggcaccttc gagggcatct caatggcgcg gtagcggccg actaccgtcg ccgtctcgcc
     5521 gccgtgtcgt gaaacgtcgc gcgcgttcct gacctcgggg ccatcctgcc gctcgtctct
     5581 tcgagccata gcgccgcctc cgccccctca agtcttaatg agcttcaggt acttctgcat
     5641 catctgccct tcgagaccga cgttggcccc ggtggtcatc ttgattttcc agaaggtgtc
     5701 gccgtcgcgc acgaccggcc tctctatgac cttgaactta tcgcccttgg cgatcttcgt
     5761 cagcttgccc gcggcgtcaa ccagcggcgc gtcagccgtg tttatctcgc ccagcgtcag
     5821 cttctccggc tcgaccacaa gggtagtctg cttcgtgccg tggcccagcg tcgaggcctg
     5881 gaactcgtcg aagctctgct tcttcgaggc cgggccgtac atccagaccc agaagggctt
     5941 cgtcgagccg gtcgcgttct cgaggctgac gtagtccttg ccgctcgcga gtatcgcggt
     6001 cgcgaagtgg tagttccaag tggagacgtc caccatcgtg ccggagacgg ggtcgagctt
     6061 tttgtgggcc ttgaagccgg gcatgtcgaa ctccgtgccg accgctatgc cctgcccgac
     6121 ggtggggacg gcgaacttgt ttatgccgta tttcttgtcg aacttctcct tgtcggcggc
     6181 ggggaggtcg ttatacttct tgagcgcctc ggcgcgggtc aaccccgagc cgaactcctt
     6241 cttgaatagc tcctccgacc aaagctccgg cgccgtcggg tcgggcgagc cgccgcccgc
     6301 gccgaagctc gtgcgcggct tcccgaactc ctccaccgtc ccgctcttgc cctttatcac
     6361 ggggacggtc gtctccgtgt ccgcgatccc catcacctgc ctgcaagcct tcatgcaggc
     6421 ggcaatcagc gtgagcgggt tgcccgtcgc ggcctccacg gggatgactt cgttgagcgt
     6481 cttggtcttg cccttcgggc tgtcgggcgc gctgcccgtc atcgtgctag gcccggtctt
     6541 gagcgacacc ttcgacccct gcgccttgag tatgctgttg gcgctcgaaa tcttgtcggg
     6601 tgccgcccag gacatcttcg agtggcccca gcccaagtcc tcgaccgcga gctggccgtc
     6661 gtcggagacc ttcagggctt tcgtgccggg gtgagcccag ccgagcgacg tgccggccga
     6721 ttgcgcggcg gtgtcgaagt ccgtgaacct ttgcaccgac gggcctgcgg gcgagattcg
     6781 cggcgagccg cccccgcccg cgccgcccgt ctgctgtatg acgtgcgtca gctcgtgcgc
     6841 aagcagagac tttccggcgc tcgtgccggg cgcgtagcgc ccccgcccga acactatgtc
     6901 gcgcccgatt gtgtaggcgt gcgcgccgat ctgcctggcc gaatcggccg ccccggcgtc
     6961 ggtgtgcacg cggacgtggc cgaggtcaac gccgaagcgc ggctccatga aggcgcgcac
     7021 gcccgcgtcc agcggctggc ccgaagagga gcgcggcacg atgttcgccg ccgaggggac
     7081 agagacagcc gcttcggcgc cccccgccgc gcgacgctgc acgcgcggcc cctcctctgc
     7141 gcactccgcg caagtccccc cgcaggcgca cttcctttgc agccgcacgg tcgtgtcggg
     7201 catcctcatt atccgctcgg ccacgctgtc ggcctcgcgt tcgtaggcgt ctccgggccg
     7261 acttatttgt agcttgcctt gcagcttcgg cggcgcggcg aggctgaccg ccggcacctg
     7321 tttggggtag gagggcgacg gcactgcggc gcgagaccgc cgcgccgggg cgcggcgaag
     7381 cgaggcggcg ggggcaggct cgccgccgtc tctctcccgg ctgtgttgag tcgctctcat
     7441 gcctgacgtg tgcgagcccg caagccgcac cagcaacggc tttcgttatt agcgttcaag
     7501 gggacgggca cccggcggcg ctccaggcgg cgttgcgctg ctccgtaatg cgtggtatcg
     7561 ctatctgttg ggcgacagtg cctccgatta cggggaagct gctcgaaagg atggcacggt
     7621 tgcatgcctg gaagagcggg actacgcggg catagtcccg cgcgttgacg gggcttgagc
     7681 agccgacgct acgcagggcg tcccgcaggt caaccctcaa gtgcactccg ccgacatcct
     7741 ccgtgcacct ctggaaggtc acaagcgtag ccgtgcctcc cagcgcgcga ttacagccca
     7801 ttcgctcaaa gatgccgatg ttggggtcgc tgcattggtc taagaggtta cacgtcaaga
     7861 acgcctgctg gtattcggcg ttgggcgccg tgaaagcctg ctgtaggcgc gtcatggtcg
     7921 cgtggttgac gcgggccagc cagagcgggt cttcaaactc accccgacga aaagccgcgc
     7981 cgatggagtc cgtcaggcat ttgtaaattt ggaggaagag cccggtcgcc agcagcctcc
     8041 gggggttgaa gagtgccgtg atggcggcgc tgtcttgatc cgccagcgcg atggcctggt
     8101 cgcgcggggt aggggcggcc ggcgcgggcg tcggggttgg cgtcgggggc gccggcgttg
     8161 tcacgcggat gccgacgacg tgccgctcgg cggtggggcc gggcgtcggc ccgtggttga
     8221 cggtagggct ctgtatgcgc gaaacggcga tgcccgcgcc cagaggggcg gcggccgtca
     8281 gcacggtctt cgccttctcc gccctcgcgc agcccagtat ctcgttgtag cggggtatcc
     8341 cgtccacgct cgtgaagccg tgtagctcga acaaagtcgt cggggcctgc gcgcgagcgt
     8401 aggcgacgag cgcggcctct tgccccggcg cgaactcgtc gcactcctgc ccgaagcgga
     8461 agagacggag gccgggcacg aacgcgtggt cgcccgcggc acaaccaggc ggctcgacga
     8521 tgttcccgta gccgcaagcg cgacggatta cgggagacga aggggataag cggacggcca
     8581 cgtcaccgcc cctcatcacc gcgtcggcga cgttgtcggc ctcactttca gccgagtcgt
     8641 cggggctgcc tacgacgggc ttgcatagag ggcctccgcc cccgcgctgc tggaggacgt
     8701 gcgccaactc gtgcgcgagc aggtgacgcc cgggcgccgt ttcgggggcg tactcgcccg
     8761 cggcgaacgc cacgtcgctc ccgaccgtgt acgcgcgcgc gttcaaagcc ttcgccgacg
     8821 ccgacgcccc cgcgcccgtg tgaatacgca cgtggccgaa gtcgtgcccg aatcgagatt
     8881 ccatgaagga acgggccgag gcgtctaacg ggcgcccgcc cgaacgcaac acgtcatgca
     8941 ccgccgccgg cgcttcggaa accccggagt cgccggtcgc ctctggcgcc gcgcggcgct
     9001 gggcactcgg ttgtttgctc gcacaccgct cgcattcctc gcccgtccct tcgcaggcgc
     9061 acttgcgctg caagcgcacg gtcgcgtcgg gcatccgcat gacgcgctcg gccacgctgt
     9121 cggcctcgcg ctcgtaaggg tcatcgggcc ggctcacgct cagtttgggc tgcaacactc
     9181 gaccggggcc gctgagtgtt acgagcggcg tcaccgccgg caaaaagggg atgggataaa
     9241 gctgcgcgca cggtgcggcg gcgcgcgctg gggcgcgggg cgcggcttcc ttccccgtgc
     9301 cgccgcgctc gtgcgtcgcc gtcatagcgg ccttcatccc gacatctcct taacagaacg
     9361 ccccgtccct cgtctcacac gttgcgaagc gggcagacgg cgccgctctt gcggtactcg
     9421 cgcttcactg cctcgaccag gtgctcggag ctgagcgccc cgccgccgcc gagcgcgagg
     9481 agcgaggcgt ggaggacggc gttgcgtatc t
//
LOCUS       DASPKR010000297         3636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_945178, whole genome shotgun sequence.
ACCESSION   DASPKR010000297 DASPKR010000000
VERSION     DASPKR010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3636)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3636
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_945178"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..386)
                     /locus_tag="VD968_08265"
     CDS             complement(<1..386)
                     /locus_tag="VD968_08265"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HYE14417.1"
                     /translation="MSRGKSSREQEGADSLAERLRGRIAREGAITFAEWMRAALYDER
                     EGYYRRRGVERWGRTGDYRTSPETSSLFGSTFARYFRGLFDELGRPPVFQIIEAGGGA
                     GHFAAAALGTMRRDAPEVFDAVRYVF"
     gene            complement(367..954)
                     /locus_tag="VD968_08270"
     CDS             complement(367..954)
                     /locus_tag="VD968_08270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HYE14418.1"
                     /translation="MFCPQCGQRQLSNEVRFCSSCGFPLNVVSEALAGGGKLQFRPAP
                     PPVSAPLSPRQKGVRQGAMLMLSTLLVVPLVAILGVELLDLPAEIAGLAAVLCFVGGL
                     LRILYAVFLEDKYPPAVAPFAEQPYVPPPTLPNYLGTPQPRAGSLPAAKTPPVAANTY
                     QPPRYDTGELAPPSASVTDHTTRLLNREPNESREE"
     gene            complement(1041..1520)
                     /locus_tag="VD968_08275"
     CDS             complement(1041..1520)
                     /locus_tag="VD968_08275"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HYE14419.1"
                     /translation="MLIVRSLGEEFARLHERSVALVRAVPADRLYWQPPPAAGGPHSI
                     RSCGEHLLRSAAAVEQTFGGITVDLWDDPFEWTLPEALATGAQVEEYLREAEATRLRA
                     FEFFRSDADLTREVATPQGPPRTLFSLMVETLARAAHHEGRAHATFRLFSGSPLPRA"
     gene            complement(1547..1897)
                     /locus_tag="VD968_08280"
     CDS             complement(1547..1897)
                     /locus_tag="VD968_08280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14420.1"
                     /translation="MSKRRALLLSTLLAALTLGLTACPSRTNIGKINADPNRYMDKEV
                     GVAGTVTDSYGVPFVGGAYELDDGTGKIWVITQRGVPSKGARVGVKGRVFSGPALRGR
                     TFGTAIQESDRRTK"
     gene            2125..3225
                     /locus_tag="VD968_08285"
     CDS             2125..3225
                     /locus_tag="VD968_08285"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14421.1"
                     /translation="MTRKTASIAPLLLALVCAQAAARQLPEPKLTPTPSNEKQTALIR
                     EGVALHERGDYDGAVRKYEEVLAENPSNTVALYEMGYALFAKKDYKRSLEVGYRGAQY
                     KSDQLGHILMLVGNNLDQLGEPQKAVEAYKKGIKLFPADGMLHFNLAITYRNMKKPEE
                     SRKSLKAAVTHSPAHASSHLALAVTFFEGGYRVPAFFAAARFLTLEPSSQRSAAAARI
                     MTDVLRGGATKGSKPNEINLALDLSAKKDEGDFSTVDLVMGLSGAMTLSEEKGKAKTQ
                     AQLLAEQVGTVLGLLEEDAGKKKQSSFTHQYYLPYFVELKRKGHAEAFTYHTLQATGL
                     PGVREWLEANSGRVMQFLIWSKGYQWPKDVKL"
     gene            3248..>3636
                     /locus_tag="VD968_08290"
     CDS             3248..>3636
                     /locus_tag="VD968_08290"
                     /inference="COORDINATES: protein motif:HMM:NF013292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoaspartyl peptidase/L-asparaginase"
                     /protein_id="HYE14422.1"
                     /translation="MKRRDFMRAGAAAGVAAAAKEALGLQTPAVVTRAARPVVVASAN
                     GNQFKNGGTETCVVRAFRLMTGGADVLEAVVAGVQINELDPADDSVGYGGLPNAEGVV
                     QLDASCMHGPTKRAGAVAALEGVRTPSL"
BASE COUNT          631 a         1212 c         1264 g          529 t
ORIGIN      
        1 tcgaagacgt agcgcacggc gtcgaagacc tcgggcgcgt cccgacgcat cgtgccgagc
       61 gccgcggcgg cgaagtggcc cgcgcccccg cccgcctcga ttatttggaa gactggtggg
      121 cggcccagct cgtcaaacag cccgcggaag tatctcgcga aggtcgagcc gaagaggctg
      181 ctggtctcag ggcttgtgcg gtagtcgccg gtccggcccc agcgctcgac gccgcgtcgg
      241 cggtagtagc cctcccgctc gtcgtagagc gccgcgcgca tccactcggc gaaggtgatc
      301 gcgccctcgc gggcgatcct cccgcgcagc ctttcggcga gtgagtcggc gccctcctgc
      361 tctcggctac tcttcccgcg actcattggg ctcacggttg agcaggcgcg tcgtgtggtc
      421 tgtgacgctg gcggacgggg gcgcaagctc gcccgtgtcg tagcgcggcg gctggtaagt
      481 gttcgcggca acgggcggag tcttcgccgc gggaagcgag ccggcgcgcg gctgcggcgt
      541 gccgaggtag ttagggagcg tgggcggcgg aacgtagggc tgctccgcga agggcgcgac
      601 ggccggcggg tacttgtctt cgaggaagac ggcgtagagt attctcagca gcccgcctac
      661 gaagcacagg acggcggcga ggccggctat ctcggccggc aagtccaaaa gctccacgcc
      721 cagaatcgcg accagaggga cgacgagcag cgtgcttaac atcagcatag cgccctgccg
      781 cacgcccttc tggcggggcg agagcggggc cgagacgggc gggggcgcgg ggcggaactg
      841 tagcttgccg ccgccggcca gcgcctcgct cacgacgttc agggggaagc cgcagctcga
      901 acagaagcgc acctcgttcg agagctgtct ctggccgcac tgtgggcaaa acatcttcga
      961 ctcctcaaat caaaatgacg ggcgacgggt gacgagcatt tataactcgt cacccgccgc
     1021 ttgtcactcg ccaccgcggc ctacgcccgc gggagcgggg agccggagaa gagccggaac
     1081 gtggcgtggg cgcgcccttc gtggtgcgcg gcgcgcgcga gcgtctcgac cattagtgag
     1141 aagagcgtgc gcggcgggcc ttgcggcgtc gccacctccc tggtgaggtc tgcgtcggag
     1201 cggaagaact cgaaggcgcg taggcgcgtc gcctcggcct cgcgcaggta ctcctcgacc
     1261 tgcgcgccgg tggcgagcgc ctcgggcaga gtccactcga aggggtcgtc ccagaggtca
     1321 acggtgatgc cgccgaaggt ctgctcgacg gccgcggcgc tgcgaagcag gtgctcgccg
     1381 caggagcgga tcgagtgcgg gcccccggcg gcgggcggcg gctgccagta gagcctgtcg
     1441 gcggggacgg cccgcaccag cgcgacggag cgctcgtgca gacgcgcgaa ctcttcgccg
     1501 aggcttcgga cgatcagcat gccagttttt atgaaagaag cgcggcttac ttggtgcggc
     1561 ggtctgactc ctgaatcgcc gtcccgaagg tgcggccgcg cagcgcaggc ccggagaaga
     1621 cgcgcccctt gacgcctacg cgcgcgccct tcgaggggac gccgcgctgc gttatgaccc
     1681 agattttgcc cgtgccgtcg tcaagctcat acgcgccgcc gacgaagggg acgccgtagc
     1741 tgtccgtgac cgtgccggcc acgccgacct ccttgtccat gtagcggttc gggtcggcgt
     1801 taatcttgcc gatgttcgtg cggctcgggc aggccgtaag gccgagcgtg agcgcggcga
     1861 gtagcgttga cagaagcagt gcgcggcgtt tgctcacttg cgtctccttc cttctcgtcg
     1921 agttgtcggg agagccctgg catcatagca cgcgaaaaac cttaccggga aaagcggccc
     1981 cggcggcagc tatcgcgcgg cggcgccccg ttggtgtata aagcttctcg gccgcgcccc
     2041 cggcgccacc tttgattgcc gcccgcgcgg cggcagttgc cttttttcta cagcaccaca
     2101 cgcccgacgc cgaggttaaa aacgatgaca cgcaagaccg cctccatcgc gcccctgctc
     2161 ctcgcgctcg tctgcgctca ggccgcggcg cggcaactgc ccgagccgaa gctcacgccg
     2221 actccatcga acgaaaagca gactgcgctc atacgcgagg gcgtcgcgct gcacgagcgc
     2281 ggcgactacg acggcgccgt ccgcaagtac gaggaggtgc tggccgagaa cccctcgaac
     2341 acggtcgcgc tatacgagat gggctacgcg ctcttcgcca agaaggacta caagcgcagc
     2401 ctcgaagtcg gctaccgcgg cgcgcagtac aaatccgacc agctcggcca catactcatg
     2461 ctcgtcggca acaacctcga ccagctcggc gagccgcaga aggccgtcga ggcctacaag
     2521 aagggcatca agctcttccc cgccgacggc atgctccact tcaacctggc gataacctac
     2581 aggaacatga agaagccgga ggagtcgagg aagagcctca aggccgccgt cacgcactcg
     2641 cccgcgcacg cgagcagcca cctagccctc gccgtaactt tcttcgaagg cggctaccgc
     2701 gtcccggcct tcttcgccgc cgcgcgcttc ctcacgcttg agcccagctc gcagcgctcc
     2761 gcggcggccg cgcgcataat gacggacgtg ctgcgcggcg gggccacgaa gggcagcaag
     2821 ccgaacgaga taaacctggc cctagacctg agcgccaaaa aggacgaggg agacttcagc
     2881 acggttgacc tcgtgatggg gctctccggc gcgatgacgc tcagcgagga gaagggcaag
     2941 gccaagacgc aggcgcagct cctagccgaa caggtcggga cggtgctcgg gctgctcgaa
     3001 gaggacgcgg gcaagaagaa gcagtcgtcc tttacgcacc agtattacct gccctacttc
     3061 gtcgagctga agcggaaggg ccacgccgag gcgttcacat accacacgct acaggcgacg
     3121 gggctgcccg gcgtgcgcga gtggctcgag gccaacagcg gccgcgtcat gcaattcctc
     3181 atctggtcga aaggctacca gtggccgaag gacgtgaaac tctaaaaagc gcggggggtg
     3241 aagagggatg aagcgtcgcg acttcatgcg cgcgggcgcg gccgccggcg tggccgctgc
     3301 ggcgaaagag gcgctcgggc ttcagacgcc ggccgtcgta acgcgggccg cgcggcccgt
     3361 cgtcgtagcc tcggccaacg gcaaccaatt caagaacggc ggcacggaga catgcgtcgt
     3421 gcgcgccttc cggctgatga cgggaggcgc cgacgtgttg gaggcggtcg tcgcgggggt
     3481 tcagataaac gagctcgacc cggccgacga cagcgtgggc tacggcgggc tgcctaacgc
     3541 cgagggggtc gtgcagctcg acgcctcgtg catgcacggc ccgacgaagc gcgccggcgc
     3601 cgtcgccgcc ctcgaaggcg tccgcacgcc ctcgct
//
LOCUS       DASPKR010000298         2059 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_557352, whole genome shotgun sequence.
ACCESSION   DASPKR010000298 DASPKR010000000
VERSION     DASPKR010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_557352"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..295
                     /locus_tag="VD968_08295"
     CDS             <1..295
                     /locus_tag="VD968_08295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14423.1"
                     /translation="EYREWDPTKDPKKGDVRIIERECVNVTFTFNCVPVLGSNPPVWW
                     KCNPLTYGQCVGTRVRLCWEVYKVVGMCTDYADKDCTRALGQSEAVDWFCLEE"
     gene            complement(521..1099)
                     /locus_tag="VD968_08300"
     CDS             complement(521..1099)
                     /locus_tag="VD968_08300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14424.1"
                     /translation="MTTTTKGEWKARTKRDLMIEVWERLDCESVGAAELEAVMEAVRG
                     RFGEGAVESPAATARLLADEGAELRHAEVLEMDARWRTADPYEAMFRNVLKFSTFDDA
                     AASIKRLDNLRRQFQRRGDREGLRRVHETVLKGKTRAQMIARNQSVNERKRAEKAEIA
                     EWFTVWLNQPEIFDDWLSLRRSSKDFREKFSE"
     gene            1218..1604
                     /locus_tag="VD968_08305"
     CDS             1218..1604
                     /locus_tag="VD968_08305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14425.1"
                     /translation="MEEFLSNLESAFMDRRALPRVAPQSKLWAAVENTTRNEMLGMAE
                     VADFCGLGLALRQIADDPVAALGDRMWVTLVADEGVIPLRARLVHIRRDGLFGLKLEA
                     PSEPGQLFLLRLYERLSSSAAAQSAG"
     gene            1669..>2059
                     /locus_tag="VD968_08310"
     CDS             1669..>2059
                     /locus_tag="VD968_08310"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HYE14426.1"
                     /translation="MTHPAQNTDEALAALRKFFGFEGFREGQREVIDAILAGHDTVVV
                     MPTGGGKSLCYQLPALMKDGVTVVVSPLIALMKDQVDALQARGLPATFVNSSLDFEEQ
                     KERIAGVRRGAFKLLYVAPERFRSQFFV"
BASE COUNT          330 a          691 c          649 g          389 t
ORIGIN      
        1 agagtatcgg gagtgggacc cgaccaaaga cccgaagaag ggggacgtga ggatcatcga
       61 gcgcgagtgc gtgaacgtga ccttcacctt caactgcgtc cctgttctcg gctccaaccc
      121 gcccgtctgg tggaagtgca acccgctcac ctacggccaa tgcgtgggta cccgcgtcag
      181 gctctgctgg gaggtctata aagtggtcgg catgtgcacc gattacgctg ataaagactg
      241 cacgcgcgca ctcggacagt cggaggcggt ggactggttc tgcctcgaag agtgaaagtg
      301 gggggcgaga ctttactcct ctatgagcgg atgcttgaag aggcgctggc acgcgacggc
      361 cgggcgcagg ccccctttgt acggcggcgg cggctatctc ggggcgcgga agaattagcc
      421 acagaggcat gggggaggta gaaggcagtt aagagacggt cgagcgggtt gactgccttc
      481 tgccttcttc tccgtgcatc ctcgcctgtg tggctaattg ttattcggag aatttttccc
      541 ggaagtcttt ggagctgcgg cgcagcgaga gccagtcgtc gaagatttcg ggctggttga
      601 gccagacggt gaaccactcg gctatctcgg ccttctcggc gcgcttgcgc tcgttgaccg
      661 actggttgcg ggcgatcatc tgcgcgcgcg tcttgccctt caagaccgtc tcgtggacgc
      721 gtctgaggcc ctcgcggtct ccccttcttt ggaactgccg gcgcaggttg tcgagccgct
      781 tgatggaggc ggccgcgtcg tcgaatgtcg agaacttcag cacgttgcgg aacatggcct
      841 cgtaggggtc ggccgtgcgc cagcgcgcgt ccatctccag gacttcggcg tggcgtagct
      901 cggccccctc gtcggccaaa agccgggccg tcgccgccgg gctttccacc gccccctcgc
      961 cgaagcggcc gcgcacggcc tccatcacag cctcgagctc ggcggcgccg accgactcgc
     1021 agtcaagccg ctcccagacc tctatcatca agtcccgctt cgtgcgcgcc ttccactcgc
     1081 ccttcgtcgt cgtcgtcacg ccggagagct taacgcccgc ccgccgccgc cttcaaggcc
     1141 ggaaaccggc gcccattaga cctttaatga aggcacaccg cgtttttcag caagcgcgac
     1201 gggggtttta acgggaagtg gaagaattcc tcagcaacct tgaatcggcc ttcatggaca
     1261 ggcgcgcgct gccgcgcgtc gcgccgcagt cgaagctctg ggcggcggtc gagaacacca
     1321 cccgcaacga gatgctcggc atggccgagg tcgcggactt ctgcggcctc ggcctcgccc
     1381 ttcgtcagat agccgacgac cccgtggccg cgctcggcga ccgcatgtgg gtcacgcttg
     1441 tcgccgacga gggtgttatc cccttgcgcg cccgcctcgt ccacatacgc cgcgacggcc
     1501 tcttcggcct caagctcgaa gccccttcgg agcccggcca gctcttcctc ctgcgcctct
     1561 acgaacgcct ctcctcctcg gcggccgcgc agtccgccgg ctgacaaccc ccgccgcatg
     1621 acgctcgcga gggcgttggg ttacaatttt cctttcggtt gtgacccgat gactcaccct
     1681 gcgcagaaca cggatgaggc gctcgccgcc cttcggaaat tcttcggctt cgagggtttc
     1741 cgcgagggcc agcgggaggt catagatgcc atactagccg gccacgacac cgtcgtcgtc
     1801 atgcccacgg gcggcggcaa gtcgctctgc taccagctcc ccgccttgat gaaagacggc
     1861 gtgaccgtcg tcgtctcgcc cctgatcgcg ctgatgaagg atcaggttga cgcccttcaa
     1921 gcgcgcggcc tgccggccac cttcgtgaac agctcgctcg acttcgagga gcagaaggag
     1981 cgcatcgcgg gggtgcggcg cggcgccttc aagctcctct acgtcgcgcc cgagcgcttc
     2041 cgcagccagt tcttcgtcg
//
LOCUS       DASPKR010000299         2744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_427746, whole genome shotgun sequence.
ACCESSION   DASPKR010000299 DASPKR010000000
VERSION     DASPKR010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2744)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427746"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..200)
                     /locus_tag="VD968_08315"
     CDS             complement(<1..200)
                     /locus_tag="VD968_08315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14427.1"
                     /translation="MSLSFKFLLGAVVISMLVVAPAPAAAQKVKETTGAIKGRVRVDA
                     GADPSDIKVVLRQGEREVAHATT"
     gene            435..1499
                     /locus_tag="VD968_08320"
     CDS             435..1499
                     /locus_tag="VD968_08320"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE14428.1"
                     /translation="MSRAMPPKKPAPRAARRALPACLCAALLCSTILTAGARQKGGGP
                     DRPARPDQQILDDGDVLRIDTDLVLVDVTVTDAEGRSVRGLRAEDFKLYEDGEQRPLA
                     FVNVERRGGAERPVAVVLAVDVSGSMTVEEMAKLQSALRDFSGHLSSRQALFSLMAFG
                     RSARVLQPLTADTRKLDRAVERLAHEAEGLSTHTYDAVDDAVRLLARQAPRTRGRELM
                     KRAVVVVTDGFPVGDTVSASTVIERANAAGVSVYTVTLPSYSRLLASASTSRVPLPTP
                     LDVSGLVEKTGGTNVYATERDYGPLFKALAEEVVSTYVLAFYPPEEKRRDGRFHTIRV
                     EAPRGLTVRQNRTGYKSGDK"
     gene            complement(1557..1748)
                     /locus_tag="VD968_08325"
     CDS             complement(1557..1748)
                     /locus_tag="VD968_08325"
                     /inference="COORDINATES: protein motif:HMM:NF044773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14429.1"
                     /translation="MPLGTCPDCDADVHVDTDADKGDTVTCEECGTVLEVVGLDPVEL
                     DIVEDDMEEDYDDEDEEEY"
     gene            complement(1931..2662)
                     /locus_tag="VD968_08330"
     CDS             complement(1931..2662)
                     /locus_tag="VD968_08330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14430.1"
                     /translation="MSRSLLHLCLRLLLLTIVALAAPAASAQRGRRAPAGGRVAVVVD
                     ERLAALRGAPDLTANLVRRLGRGRVVAVAGARASAGGVTFYRVAVTRRTGGWLQADAV
                     VSPTRPGDDARLLRLARGSEGFDRLARARIFLDTFPRSSLRPAALLLFGDEAESAASA
                     LTRDAARRLDEREMQAGGAPRASYFLNFNGLDRYRRQGVVFNFDEGAKRFSYDGAAFR
                     EILRRHPRSPEAAEARARLDRSRAR"
BASE COUNT          420 a          956 c          953 g          415 t
ORIGIN      
        1 gtcgtggcgt gcgccacctc gcgctcgccc tgccgcagca cgacttttat gtccgagggg
       61 tcggcgcccg cgtccacgcg cacgcgcccc tttatcgcgc ccgtcgtctc cttcaccttc
      121 tgcgccgcgg cgggggcggg cgccacgacg agcatggaaa tgacgacggc tccgagtaga
      181 aatttaaagc tcagtgacat ttggttcttg ggtctttacg ttttcggccg gcttggggga
      241 ggcaggcggc gcggctttta agcggcccgg attataacac gccgcccggt gataggaggc
      301 gcggccacgg attgatgcgc ccggcgcgca ggcaggatgc ccgcatggag ggaggaggtg
      361 gcgggcgggc gcatgtgtcg agtataatcc gcgtcgctcc cctcgcccgt tcgagcggtt
      421 aagtcccgaa gacaatgtca agagcaatgc ccccgaagaa gcccgcgccg cgcgccgcgc
      481 gccgagccct gcccgcgtgc ctctgcgcag ccctcctctg ttcaacgatt ctgaccgccg
      541 gcgcacgaca gaagggcggc gggcccgacc ggcccgcgcg ccccgaccag cagattctcg
      601 acgacggcga cgtgctcagg attgacacag acctcgtgct cgttgacgtg acggtgacgg
      661 acgccgaggg gcggagcgtg aggggccttc gggccgaaga cttcaagctc tacgaggacg
      721 gcgagcagag gccgctcgcc ttcgtcaacg tcgagcggcg cggcggcgcc gagcggcccg
      781 tcgccgtcgt gctcgccgtt gacgtttcgg gcagcatgac cgtcgaggag atggcgaagt
      841 tacagtcggc gctgcgcgac ttctcgggcc acctctccag ccggcaggcc ctcttctctc
      901 tcatggcctt cggccggagc gcgcgcgtgc tgcaacccct gacggccgac acgcgcaagc
      961 tcgaccgcgc cgtcgagcgg ctcgcccacg aggcagaagg gctctccacg cacacctacg
     1021 acgccgttga cgacgccgtg cggctgctcg cgcgccaggc gccgcgcacg cgcgggcgcg
     1081 agctgatgaa gagggccgtg gtggtcgtaa cggacggatt ccccgtcggc gacaccgtca
     1141 gcgcctcgac cgtcatcgag cgcgccaacg cggccggggt gagcgtctat acggtgacgc
     1201 tgccgtccta ctcgcggctg ctcgcctcgg cctcgacctc gcgcgtgccg ctgccgacgc
     1261 cgctggacgt gagtggcctc gtcgagaaga ccggcggcac gaacgtctat gccaccgagc
     1321 gcgactacgg ccctctgttt aaggcgctcg ccgaggaggt cgtctcgacc tacgtgctcg
     1381 ccttctaccc ccctgaagag aaaaggcgcg acgggcgctt ccacacgata cgcgtcgaag
     1441 ccccgcgcgg cctcacagtc cgacagaacc gcacaggata taaaagcggc gacaagtgac
     1501 gggcggcggg cgttggcgac tcatcccgcc cttaactcgt cacccgccgc cgcccctcag
     1561 tactcctctt cgtcctcgtc gtcgtagtct tcctccatat cgtcctcgac gatgtcgagc
     1621 tcgacggggt cgaggccgac gacttcgagc accgtcccgc actcctcgca cgtcacggtg
     1681 tcgcccttgt ccgcgtcggt gtcaacgtgt acgtcggcgt cgcaatcggg gcacgttcct
     1741 aaaggcacgg ttccttccct cctggtgttg aatgacgcag aagggcgcgc cttcggcggg
     1801 agagccttct gcctcgcagc gttgtaacga ccgccgacaa tctaactgcc cacgtgcgat
     1861 tttgcaatac ccatctcggg gccgcgcgcg tgaccttcct gcggcccgac ggcgtgcggt
     1921 ttcgtacgcc ctagcgcgca cgcgagcggt cgagacgggc gcgcgcttcc gccgcctctg
     1981 ggctgcgcgg gtggcggcgc agaatctccc ggaaggccgc gccgtcgtag ctgaaccgct
     2041 tcgccccttc gtcgaagttg aagacgacgc cctgacggcg gtagcggtcg agcccgttga
     2101 agttgaggaa gtaactcgcg cgcggggcgc cgccggcctg catctcgcgc tcgtcgagcc
     2161 ggcgcgctgc gtcgcgcgtg agcgccgagg ccgccgactc ggcctcgtcg ccgaagagga
     2221 gcagcgcggc gggcctcaag gaggagcgcg ggaacgtgtc gaggaatatg cgggcgcgcg
     2281 cgaggcggtc gaagccttcg gagccgcgcg cgaggcgcag cagccgcgcg tcgtcgcccg
     2341 gccgcgtggg cgagacgacc gcgtcggcct ggagccaccc gcccgtgcgc ctcgtgaccg
     2401 cgacgcggta gaaagtcacg ccgcccgcag aggcgcgcgc gcccgcgacc gccacgacgc
     2461 ggccgcgccc gagcctgcgc acgaggttgg cggtgagatc gggcgcgccc ctgagcgcgg
     2521 caaggcgctc gtcaaccacg acggccacgc gcccgcccgc gggggctctg cgccccctct
     2581 gcgccgacgc ggcgggggcg gcgagcgcga ctatggtgag taacagaagt cgaaggcaaa
     2641 ggtgcaagag gcttcgggac atggcttcgc tctcctttga agggtgaggg tgggagaccg
     2701 agttttaagt gggagccgcg aggcgaagcg gcgaacaatc cgag
//
LOCUS       DASPKR010000300         4709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_297186, whole genome shotgun sequence.
ACCESSION   DASPKR010000300 DASPKR010000000
VERSION     DASPKR010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4709)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4709
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297186"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..510
                     /locus_tag="VD968_08335"
     CDS             <1..510
                     /locus_tag="VD968_08335"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HYE14431.1"
                     /translation="TFWKGWGDVNEPWKYCIEERVRWGDVDAARIIFYGAYIRFFEFA
                     ETELFRAAGMPYGVTFDELDVWLPRVHLECDFRRAAQLDDLLEVCAYVGRVGRTSLRL
                     DFEVRRKGEGEMVAEAHFVLVAVRRGTFETVPLPEELKRRLAPFTRPAGEGGSDGAEG
                     APRERALEV"
     gene            complement(463..1686)
                     /locus_tag="VD968_08340"
     CDS             complement(463..1686)
                     /locus_tag="VD968_08340"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYE14432.1"
                     /translation="MTGGGGKFDALIVGAGPAGSLAAELLARGGTRVALFDGRAPEDA
                     KACGGGVTSKALKAWPYLLEAGGRAVTEVEMYSPAGGRVRLKLAEPFAIYSRRALDSY
                     LRGRALGAGAQVFEGRVAASAGRDARGDWAVRSREGVEWRGPVLVAADGANSPIARRL
                     AGALPNSEMEVAFGYRTPLNGEGDCPTVIAFLPGWAGYAWAFPRMDHISFGIATTQDA
                     FDHKTLDRLLWDFMVGYYLMREQEGAPLWRRNGSYAARERAIEDQLRGSANRYAARIP
                     GLTPESFDKRRAAGDGWALLGDAGGFADPVTGEGIYYALRSAELFAEAFLAGDVPSYE
                     ARWRADFGRELRRASQMRRRFYGEFLGGPFTERMIKFARSHRGVRRTLCELIAGDQGY
                     LDLKRTLARRAFRPV"
     gene            1783..2589
                     /gene="amrB"
                     /locus_tag="VD968_08345"
     CDS             1783..2589
                     /gene="amrB"
                     /locus_tag="VD968_08345"
                     /inference="COORDINATES: protein motif:HMM:NF014899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system protein B"
                     /protein_id="HYE14433.1"
                     /translation="MAESSLVFVGVAPHPPVMVPEVGGVMAREVRASIEAMRELTERV
                     IASGAETVVIVSPHAPLDARAFVAYGGPRLSGDFANFRAPQATVGAPLDEELLSAVTL
                     EAAEDGYRVLVFGNYKLDHGTAVPLYFLQRNGWDGRVVALGYTFLSNEDHVRFGACVR
                     RAADSTGRRVAFIASGDLSHRLKPDAPAGYDHEAHLFDEEVVEAVRACAFERVVNIDQ
                     NLRRTAGECGYRSMLVAFGAAGGAAPGCELLSYEAPFGVGYMVAQLARAN"
     gene            2601..3173
                     /gene="amrA"
                     /locus_tag="VD968_08350"
     CDS             2601..3173
                     /gene="amrA"
                     /locus_tag="VD968_08350"
                     /inference="COORDINATES: protein motif:HMM:TIGR04335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system protein A"
                     /protein_id="HYE14434.1"
                     /translation="MSNVAQTKHYPSEAAPPALARAAVEAFVRERRLIEPDDSGLPEY
                     LMRPAACFVSIKTVERDLRGCIGTTRPEQKTLAEEIIRNAVRAATRDPRFNPISEDEL
                     PALRYSVDVLESPEPCRPEELDPEIYGVIVEDSEGSRRGLLLPNIEGVETAARQVEIA
                     ARKAGIPPQQPLKLFRFRTRRFKEAAAAQD"
     gene            3193..3438
                     /locus_tag="VD968_08355"
     CDS             3193..3438
                     /locus_tag="VD968_08355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14435.1"
                     /translation="MADFNESKSSLGEKNAEPDLKPDTKPDAIEDLNPANDERSLNLG
                     ESGQFAPGGRYNELGATKPRRIDLDEQVDSAVSGDKS"
     gene            complement(3593..>4709)
                     /locus_tag="VD968_08360"
     CDS             complement(3593..>4709)
                     /locus_tag="VD968_08360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002506219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HYE14436.1"
                     /translation="RMAHQAILPLRGKILNVEKAAVDSILDHEEIQIIVRAIGTGFLT
                     DEFEPEKLRYGKIIVMTDADVDGSHIRTLLLTFFFRQMPKLIEAGHVFIAQPPLFKVK
                     RGKREEYIKDERSMVRFLMRQATSDMKVTSVETGAVVEGRELARALENMVELKRYCEK
                     LVRRLGNDERLLQALLEAFGGREGVLADEGATLRGVFQDEDGKQIGRVEKSLYKAGYK
                     TELDSDEEHGLWEIKTTVPGGVKVKIGWELASHVEFQKAVELYKSLEGRLATPLILGE
                     NGTREQVESRDELLERVLSAAKKDLTIQRYKGLGEMNPEQLWETTMNPEKRTLLQVKI
                     DDAVETDQIFTILMGDAVEPRRRFIEDNALDVKNLDV"
BASE COUNT          850 a         1602 c         1433 g          824 t
ORIGIN      
        1 actttctgga agggctgggg tgacgtgaac gaaccctgga aatactgcat cgaggagcgc
       61 gtgcggtggg gcgacgttga cgccgcgcgc ataatcttct acggcgccta catacgcttc
      121 ttcgagttcg ccgagaccga gttgttccgc gcggcgggca tgccctacgg tgtgaccttc
      181 gacgagctcg acgtgtggct cccgcgcgtg cacctggagt gcgacttccg gcgcgccgct
      241 cagctcgacg acctgctcga agtctgcgcc tacgtcggcc gcgtcggccg cacgtccctg
      301 cggctcgact tcgaggttcg ccgcaagggc gagggcgaga tggtcgccga ggcccacttc
      361 gtcttggtcg ccgtccgccg gggaacgttc gagacagtgc cgctgcctga agagttgaag
      421 cgacggctcg cgcctttcac gcggccggcg ggggagggcg gctcagacgg ggcggaaggc
      481 gcgccgcgcg agcgtgcgct tgaggtctag gtagccctgg tcgccggcta tcagctcgca
      541 cagcgtccgg cgcacccctc ggtgagagcg cgcgaacttg atcatcctct ccgtgaaggg
      601 gccgcccaag aactccccgt agaacctgcg cctcatctgc gaggcgcggc ggagttcgcg
      661 cccgaagtcg gcgcgccagc gcgcctcgta tgaaggcacg tcgcccgcca gaaaggcttc
      721 ggcgaaaagc tcggccgagc gcagcgcgta gtagatgccc tcgcccgtaa cagggtctgc
      781 gaagccgccg gcgtctccca gtagcgccca cccgtcgccc gccgcgcgac gtttgtcgaa
      841 actctcgggc gtcaagcccg gtatgcgcgc ggcgtagcgg ttggcgctgc cgcgcagctg
      901 gtcttcgatt gcgcgctcgc gcgccgcgta tgagccgttc cgtcgccaga gcggcgcgcc
      961 ctcctgctcg cgcatgaggt agtagccgac catgaagtcc cagagaaggc ggtcgagcgt
     1021 cttgtggtcg aaggcgtcct gcgtagtggc gatgccgaaa gagatgtgat ccatgcgcgg
     1081 gaaggcccac gcgtagccgg cccagccggg caggaaggct atgacggtcg ggcagtcgcc
     1141 ctcgccgttc aagggagttc ggtagccgaa ggcgacttcc atctcggagt tgggcagagc
     1201 ccctgcgagc cggcgcgcga tggggctgtt ggctccgtcg gccgcgacga gcacggggcc
     1261 gcgccactcg acgccttcgc gcgagcgaac ggcccagtcg ccgcgcgcgt ccctccctgc
     1321 cgaggccgcg acgcgcccct cgaagacttg cgcgccagcg ccgagcgcgc gcccgcgcag
     1381 gtaagagtcg agggcgcggc gcgagtagat tgcgaagggc tccgcgagct ttagccgcac
     1441 tcgcccgccc gcgggcgagt acatctcgac ttccgtcacg gcgcgcccgc ccgcttcgag
     1501 taagtaaggc caggccttca gcgccttcga cgttacgccg ccgccgcaag ccttcgcgtc
     1561 ctccggcgcg cggccgtcga agagcgccac gcgcgtcccg ccccgcgcca gcagctcggc
     1621 cgccaaagac ccggccggcc ccgccccgac aatcagcgcg tcgaatttac cgccgccacc
     1681 cgtcatgctt ttcgaatcgg agcctgtccg cctccgcctc gttgtgctaa aatcctcgaa
     1741 acccctacag acaattattc gagtccccca cgtaagagag ctatggcaga aagctcgctc
     1801 gtcttcgtcg gcgtcgcccc gcaccctccc gtgatggtgc cggaggtggg aggcgtcatg
     1861 gcccgcgagg tgcgagcttc aatcgaagcg atgcgcgaac tgaccgagcg tgtcatcgcg
     1921 agcggcgccg aaaccgtcgt catcgtctcg ccgcacgcgc cgctcgacgc gcgcgccttc
     1981 gtagcctacg gcgggccgcg gcttagcgga gattttgcca acttccgcgc cccgcaggca
     2041 acggtcggcg ccccgcttga cgaagaactt ctgagcgccg ttacccttga ggcagccgaa
     2101 gacggttacc gagtcctggt tttcggcaac tacaaattag accacggcac cgccgtaccg
     2161 ctctactttc tacagcgcaa cggctgggac ggccgcgtgg tcgcgctcgg gtacaccttt
     2221 ctgtctaacg aagatcacgt gcgcttcggc gcgtgcgtgc ggcgcgcggc cgactcgacg
     2281 ggaaggcgcg tagccttcat cgcgagcgga gatttgagcc accggctcaa gcccgacgcg
     2341 cccgccggct acgaccacga agcccacctc ttcgatgaag aggtcgtcga agccgtccgc
     2401 gcctgcgcct tcgagcgcgt cgtcaacatt gaccagaacc tccgccgcac ggccggcgag
     2461 tgcggctacc gctcgatgct cgtagccttc ggggctgcgg gcggggctgc gcccggctgc
     2521 gagctgctga gctacgaggc gccgttcggc gtcggctaca tggtggcgca actggcccgt
     2581 gccaattgac ctttaaactg atgagcaacg tcgcccagac caaacattat ccgagcgaag
     2641 ccgccccccc ggcactcgcc cgcgcggccg tggaggcttt cgtccgggaa aggcgtctga
     2701 ttgagcccga cgactccggc ctgcccgaat atttaatgcg gcctgccgcc tgcttcgtct
     2761 ctatcaagac cgtcgagcga gatttgcgcg gctgcatcgg cacgacccgg cccgaacaaa
     2821 aaacgctcgc cgaagagata atacgtaacg ccgtccgcgc agcgacccgt gacccgcgct
     2881 ttaaccccat ctcggaggac gagcttccgg cactgcgcta ctcggttgac gtgctcgaaa
     2941 gccccgagcc ttgccggccc gaagagctcg accctgaaat ctacggagta atcgtcgaag
     3001 acagcgaagg ctcgcgccgc gggctcttac tcccgaacat cgaaggcgtc gagacggcgg
     3061 cccggcaggt cgaaatagcc gcccgcaaag ccggaatccc cccgcaacaa ccccttaaac
     3121 ttttccgctt ccgcactcgc cgtttcaaag aggcggccgc ggcgcaagac taagcacaag
     3181 gagacaaaga agatggcaga tttcaacgag tcgaaaagct ctctgggcga gaaaaacgcc
     3241 gagcccgacc tcaagcctga caccaagccc gacgcgattg aagacttgaa ccccgccaac
     3301 gacgagcgct cgctcaacct cggggagtca gggcagttcg cgcccggcgg ccgctacaac
     3361 gagctaggcg cgacgaagcc gcgccgaatt gacttggacg agcaggttga ttcggccgtc
     3421 tcgggagata agagctgacc taaaccgatt gattttcgta aataaaaaat ccgctgcata
     3481 cgcgagaagc atgcagcggg caagatccac aggaggaaag ggccttcatt ctacataagc
     3541 gggtgcggtg tgtcaaatag attcattccg cacccgccta cgagaaccgc gattacacgt
     3601 ctaagttctt cacgtctaac gcgttatctt cgatgaagcg ccggcggggc tcgacggcgt
     3661 cgcccatcag aattgtaaaa atctggtcgg tctccaccgc gtcgtctatt ttcacctgaa
     3721 gcagcgtacg cttctccggg ttcatggtcg tctcccagag ctgctccggg ttcatctcac
     3781 ccagcccttt gtagcgctga atcgtcaagt ccttcttcgc cgcgctcaaa accctctcaa
     3841 gaagctcgtc gcgcgactcg acctgctccc tcgtcccgtt ctcaccgaga atcagcggcg
     3901 tcgcaaggcg cccttccaag ctcttgtata gttcgacggc cttctggaac tcgacatggc
     3961 tggcaagctc ccagcctatt ttaactttta caccgcccgg cactgtcgtc ttgatttccc
     4021 agagcccatg ctcttcatcc gagtccagct cggttttgta ccctgccttg taaagggatt
     4081 tttcgacacg cccgatctgc ttcccgtcct catcctgaaa gacgccccgg agcgtggccc
     4141 cttcatcggc cagaacgccc tcacgcccac cgaaagcttc cagaagcgct tggagcagac
     4201 gctcatcgtt gccgagccgc ctgacgagtt tctcacaata acgcttcaac tcgaccatgt
     4261 tctcgagcgc acgagccagc tcgcgaccct ctacgaccgc ccccgtctcg acggaagtca
     4321 ccttcatgtc gctcgtggct tgacgcataa ggaagcgcac catcgagcgc tcatccttta
     4381 tgtactcctc acgcttacca cgttttactt taaaaagcgg aggctgggcg atgaagacgt
     4441 ggccagcctc aatcagcttc ggcatctgac ggaagaagaa cgtgagcagc agcgtgcgga
     4501 tgtgcgagcc gtccacgtcg gcgtcggtca tcacgatgat cttcccgtag cgcagcttct
     4561 ccggctcgaa ctcgtcggtg aggaagccgg tgccgatcgc gcgcacgatg atctggatct
     4621 cctcgtggtc gaggatgctg tcgaccgcgg ccttctcgac gttgaggatc ttgccgcgca
     4681 gcggcaggat cgcctggtgc gccatccgg
//
LOCUS       DASPKR010000301         2359 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_428051, whole genome shotgun sequence.
ACCESSION   DASPKR010000301 DASPKR010000000
VERSION     DASPKR010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428051"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1659)
                     /locus_tag="VD968_08365"
     CDS             complement(<1..1659)
                     /locus_tag="VD968_08365"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE14437.1"
                     /translation="MRDLRRLLFYLKPHWGKFTLATVAMLAVGLLQSAIGALIVPIFD
                     QALRQMGEEGQRTPTLFGLQNLIPDSGFAAWRTIAVLLIVFTLLKGVAEYFSTYLMAR
                     VGQESVMRLRTDMYAHLHAQSADFFERHRTNYLVSRLVGSAAAIEAAVSHTLRDMLRE
                     GFTLVFFLSASFYYSWRLTLGSLMIAPVIGLLTARYGGALRKLARESYEGGQRLVDTA
                     QEALSNHTIVKAYSAEEHEKRRFLKEARQILRANLRTAKINGVAPPSIEMIGVAAVAV
                     LLFFAQREIMSGHMNAAQFITFLFFLFSSYDPMRKLSRLHNGMEQALAAARHVWEVMD
                     EHEEMPEKPNAVELGPLREGIELRGVHFRYGNEERRVLRGIDLSIPAGRMVALVGESG
                     GGKSTITKLVPRFHDPDEGQVTWDGVDLRDAQLRSLRRNIAIVTQETVLFNDTVRYNV
                     AYGRPSATDAEIEQAARVAYAHDFIMELPAGYDTVVGERGVFLSGGQRQRLAIARAVL
                     ADASVLVLDEATSALDAESERLVQKALANLTRGRTTIVIAHRLST"
     gene            1896..>2359
                     /locus_tag="VD968_08370"
     CDS             1896..>2359
                     /locus_tag="VD968_08370"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYE14438.1"
                     /translation="MSLRILIVDDDLSMRLLLAEYFRRLGYEIEEKESAEEALDAAVS
                     GRFDCFIFDVSMPGMSGIELLKRVRDRGVETPAMFLTAHDAVDDKVAGFQAGADDYLA
                     KPFSPRELEVRVEALLRRAGRWSKPEDEKKDRFEIGDLVIDKRRHEVTVAGGR"
BASE COUNT          411 a          736 c          815 g          397 t
ORIGIN      
        1 ggtcgagagc ctgtgcgcta tgacgatggt cgtgcggccc cgcgtgaggt tggcgagcgc
       61 cttctgcacg agcctttcgg actcggcgtc gagcgccgat gtggcctcgt cgagcacgag
      121 cacggaggcg tcggccagca ccgctcgggc gattgctagc cgctgccgct gcccgcccga
      181 aaggaagacg ccgcgctcgc ccacaacggt gtcgtagccc gcgggcagct ccattatgaa
      241 gtcgtgcgcg taggcgacgc gggcggcctg ctctatctcg gcgtccgtgg cagaggggcg
      301 gccgtacgcg acgttgtagc ggacggtgtc gttaaaaagc accgtctcct gcgtgactat
      361 cgcgatgtta cggcgcagcg accgtagctg cgcgtcgcgc aggtcaacgc cgtcccaggt
      421 gacctgcccc tcgtcggggt cgtggaagcg cgggacgagc ttcgtaatgg ttgacttgcc
      481 cccgcccgac tcgcccacga gcgccaccat gcggcccgcc gggatgctca gatcaatccc
      541 gcgcagcact ctccgctcct cattcccgta gcggaagtgg acgccgcgca gctcaatgcc
      601 ctcgcgcagc gggcctagct cgacggcgtt cggcttctcg ggcatctctt cgtgctcgtc
      661 catcacctcc cacacgtggc gggcggctgc gagcgcctgc tccatcccgt tgtgcaggcg
      721 cgagagcttg cgcatggggt cgtagctcga gaagaggaag aagaggaacg tgatgaactg
      781 cgcagcgttc atgtggcccg acattatctc gcgctgcgcg aagaagagca ggacggcgac
      841 cgccgcgacg cctatcatct cgattgacgg cggcgctacg ccgtttatct tcgccgtgcg
      901 gaggttggcg cgaagtatct gccgcgcctc tttgaggaag cgccgcttct cgtgctcctc
      961 ggccgagtaa gcctttacga ttgtgtggtt cgacagggcc tcctgcgccg tgtcaacgag
     1021 cctctggccg ccttcgtagg actcgcgcgc cagcttgcgg agcgccccgc cgtagcgcgc
     1081 cgtaagcaag ccaatgacgg gcgcgatcat cagcgacccg agcgtcaggc gccaggagta
     1141 atagaacgag gccgagagga agaagacgag cgtgaagccc tcgcgcagca tgtcgcgcaa
     1201 ggtgtgcgag acggcggcct cgattgccgc ggccgagccg acgaggcgcg agacgaggta
     1261 gttcgtgcgg tggcgctcga agaagtcggc cgactgcgcg tgcaggtgcg cgtacatgtc
     1321 cgtgcgcagc cgcatgacag attcttggcc tacgcgcgcc atgagatacg tcgagaagta
     1381 ttccgcgacg cccttcagga gcgtgaagac gatgagcagc accgcgatgg tgcgccaggc
     1441 ggcgaagccc gagtcgggga tgaggttctg taggccgaag agcgtgggcg tccgctggcc
     1501 ctcctcgccc atctgtcgga gggcctggtc gaagatgggg acgatgagtg cgccgattgc
     1561 gctctggagg aggccgacgg cgagcatggc gacggtcgcg agggtgaact tcccccagtg
     1621 cggcttcagg tagaataaga gtcgccttaa atctcgcatt aagctttgtc ttcgctctcg
     1681 ccggcccgac ggtggaggga gggttggaca gcgcccgccg tcagtaaacg aaaactataa
     1741 gtagcgggcg ccgaaggcgt caagggaagg gggggcgccg ccggcgccgc gtcgttacag
     1801 cgccgtgccg ctttgccgct tcatgcgcta taatcggccc gccctaaagc tcttgcgcgc
     1861 gagcgctcta cccgacaact gtgcaaggtg gacaagtgag cctccgtatt ctgatcgttg
     1921 acgacgattt gagcatgcgg cttctgctgg cggaatactt ccgccggctg ggctacgaga
     1981 tagaggagaa ggagagcgcc gaggaggcgc tcgatgcggc cgtctcgggc cgcttcgact
     2041 gcttcatctt cgacgtgagc atgccgggca tgtcggggat agagctatta aagcgcgtgc
     2101 gcgaccgagg cgtcgaaacc ccggccatgt tcctgaccgc gcacgacgcc gttgacgaca
     2161 aggtcgccgg cttccaggcc ggcgccgatg actacctcgc aaagcccttc agcccgcgcg
     2221 aactcgaagt cagggtcgag gcgctcctgc gacgcgcagg ccggtggtcg aagcccgagg
     2281 acgagaagaa agaccgcttc gagataggcg acctcgtcat tgacaagcgc cgccacgagg
     2341 tgacggtcgc gggcggccg
//
LOCUS       DASPKR010000302         3529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_816576, whole genome shotgun sequence.
ACCESSION   DASPKR010000302 DASPKR010000000
VERSION     DASPKR010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3529)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3529
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_816576"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..294)
                     /locus_tag="VD968_08375"
     CDS             complement(<1..294)
                     /locus_tag="VD968_08375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14439.1"
                     /translation="MRRTMTYALATVLALLPLSAAPARSQVKMPTTRIASVLQPSQSP
                     LVTFRLLFMTGSAHDPKGKEGVASLTAAMLAEAGSRSMTYEQIVEAMYPMATSF"
     gene            complement(297..1673)
                     /locus_tag="VD968_08380"
     CDS             complement(297..1673)
                     /locus_tag="VD968_08380"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE14440.1"
                     /translation="MKTLLLVALLLCLPLVGLARQGQRKIFPYKYTIDDLPNGLRLVT
                     VPTEYPNLVALYIVVGAGSRNEVEAGKSGFAHFFEHMMFRGSENYTPEQREDIFKRAG
                     AETNAYTSDDRTVYHATFSKEDLEEIMKAEADRFIRLKYTPEQFKTESQAVLGEYNKN
                     SANPFFKMHEVLRETAFKRHTYSHTTMGYLKDIQDMPNQYDYSLQFFGRFYRPEYTTI
                     TVVGDITRERALELTRRYWGEWKRGDYKVEIPREPEQNESRTAHIEWPSPTLPHLQVA
                     FRGPAYSGGSMDVAALDLLQSIAFGENSELYQRLVLKEQKVDIFGADFGHQADPELFT
                     VVARVKDPADVGYVRDQILKTTERYKTEQVTQAQLDATRSRMRYGFAMAMNSNSAIAA
                     AIAPYVALTRTPETLNELFESYQKVTPGDIRDVAKKYFREESRTIVTLSTKGVNIARA
                     GGRGKEGN"
     gene            complement(1797..3251)
                     /locus_tag="VD968_08385"
     CDS             complement(1797..3251)
                     /locus_tag="VD968_08385"
                     /inference="COORDINATES: protein motif:HMM:NF016021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14441.1"
                     /translation="MLNIDRYHATMGDASYKDVTRLRGGPLSDAEATFYVTQRKLPFA
                     PCLGHERLLRSLLDLRVDRPRLRTLEQDRGGLALFARAVEDINFAGTIRAVRPGTLMF
                     AGQPFADITGAFGLTQAQEIKFEHAFDLPMTTASIAMRLRMAAGDRWLSDFSLRRNGD
                     IERAVDVATYAFIGGFNDTSNMEAAHRLDIPAVGTEAHYWQQSYVEFMFEPEIEERTG
                     RPKHFEQVAFERWLDANPQGTTLLLDTIDVHTGAVHAAMAATSSEARRRAFKGFRIDS
                     GDLAKSGRWCLEFFEANGLKGLMPVLTGDLDVEAVSSIVEEFPEAAGFGVGTKLSGEV
                     SRVAGVIFKECVIEGRPTMKVSEAPEKSTLPGRLQVFRGVGADGRYVADVTGLDDEEP
                     EIPGAARVERLLAPFWERGRHEAIPSIKKQKAFVEEQLSRFPDLGAYPHSLSDKLRSL
                     RDELTVRMRRDDSGWRQVLRLPDSLAPELRRGEP"
     gene            complement(3251..>3529)
                     /locus_tag="VD968_08390"
     CDS             complement(3251..>3529)
                     /locus_tag="VD968_08390"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HYE14442.1"
                     /translation="RIEVVSKGLGDEDCYSAFDGTGLAEMLRSRGVREVWVGGLATDY
                     CVKNTVLDALRSGFRVRAVRDAMRAVNLEAGDDRRALAEMQEAGAEIV"
BASE COUNT          540 a         1100 c         1249 g          640 t
ORIGIN      
        1 gaaggacgta gccatcgggt acatagcctc gactatctgc tcgtaagtca tcgagcgcga
       61 gccggcctcg gcgagcatcg ccgccgtcag ggacgcgacg ccctccttgc ccttcgggtc
      121 gtgggccgag cccgtcatga agagcagccg gaaggttacg agcggcgact gcgacggttg
      181 cagtacgctt gcgattcttg tcgtcggcat ctttacctgc gagcgggccg gggcggcgga
      241 gagtgggagg agcgccagca ccgtcgccag cgcgtaagtc atcgtgcgtc tcatcgctag
      301 ttgccctcct tcccgcggcc gccggcccgc gcgatgttca cgcccttggt cgagagcgtg
      361 acgatggtgc ggctctcctc gcggaagtat ttcttcgcca cgtcgcgtat gtcgccgggc
      421 gtgaccttct ggtagctctc gaaaagctcg ttaagcgtct cgggcgtgcg cgtgagcgcg
      481 acgtagggcg cgatggcggc ggcaatcgcg ctgttgctgt tcatagccat cgcgaagccg
      541 tagcgcatgc gcgagcgcgt cgcgtctaac tgcgcctgcg tcacctgctc ggtcttgtac
      601 ctctccgtgg tcttgagaat ctggtcgcgc acgtagccca cgtccgcggg gtctttgacg
      661 cgggcgacga ctgtgaacag ctcggggtcg gcctggtggc cgaagtcggc gccgaatatg
      721 tcaaccttct gctccttgag gacgaggcgc tggtagagct cggagttctc gccgaaggct
      781 atggactgca agaggtcgag cgcggccacg tccatcgagc cgccggagta ggccgggccg
      841 cggaaggcga cctgcaggtg cgggagcgtc ggcgacggcc actcgatgtg ggccgtgcgc
      901 gactcgttct gctcgggctc gcgcggtatt tcgaccttat agtcgccgcg cttccactcg
      961 ccccagtatc gcctggtcag ttcgagcgcg cgctcgcgcg tgatgtcgcc gacgacggtg
     1021 atggtcgtgt actcggggcg gtagaagcgg ccgaagaatt gcaggctgta gtcgtactgg
     1081 ttgggcatgt cctgtatgtc tttgaggtag cccatcgtcg tgtgcgagta ggtgtggcgc
     1141 ttgaaggcag tctcgcgcag cacctcgtgc atcttgaaga aggggttggc gctgttcttg
     1201 ttgtactcgc ccaagacggc ctgcgactcg gtcttgaact gctcgggcgt gtacttcagc
     1261 cgtatgaagc ggtcggcctc ggccttcatt atctcttcga ggtcttcctt cgagaaggtc
     1321 gcgtgataga cggtgcggtc gtcggaggtg taggcgttcg tctccgcccc ggcgcgcttg
     1381 aagatgtcct cgcgctgctc gggcgtgtag ttctcgctcc cgcggaacat catgtgctcg
     1441 aagaagtgcg cgaagccgct cttgccggcc tcgacctcgt tgcgcgagcc ggccccgacg
     1501 acgatgtaga gcgcgacgag gttcgggtac tccgtaggca ccgtgacgag gcgcagcccg
     1561 ttcggcaggt cgtctatggt gtacttgtac gggaagattt tgcgctggcc ctgacgcgcc
     1621 aggcccacga gcggcaggca caacaggaga gcgacgagaa gcagcgtttt catctcctaa
     1681 agactccgta aactttggct ttagattttt gaaggggacg cccgagatta tacacgagcg
     1741 gggcgcaaac ggcaggccgg cgggtgacgg tagagactgc cggggcggcc ttctcgtcag
     1801 ggctctccgc gccgaagttc gggcgcgagc gagtcaggga ggcggaggac ttgccgccag
     1861 ccggaatcgt cgcggcgcat ccgcacggtc agctcgtctc ggagcgagcg gagcttgtcg
     1921 ctcagtgagt gagggtaggc gccgaggtct gggaagcgcg agagctgctc ttcgacgaaa
     1981 gccttctgct tcttgatgga ggggatggcc tcgtggcggc cgcgctccca gaagggcgcg
     2041 agcagccgct cgacgcgagc ggcgccggga atctccggct cctcgtcgtc gaggccggtc
     2101 acgtctgcca cgtagcgccc gtcggcgccg acgccgcgga agacctgaag gcggcccggc
     2161 agcgttgact tctccggcgc ctcagagacc ttcatggtgg gccggccctc gatgacgcac
     2221 tccttgaaga tgacgccggc cacgcggctg acctcgcccg agagcttcgt gcccacgccg
     2281 aagccggccg cctcggggaa ctcctcgacg atgctactga cggcctcaac gtccaggtcg
     2341 cccgtaagca ccggcatcaa acctttaaga ccgttggcct cgaagaactc caggcaccag
     2401 cggccggact tcgccaggtc gcccgagtct atgcggaagc ccttgaaggc gcgccggcgc
     2461 gcctccgatg aggtcgcggc catcgcggcg tgaacggcgc cggtgtggac gtcaatcgtg
     2521 tcgagcagga gcgtggtgcc ttgcgggttg gcgtcgagcc agcgctcgaa ggcgacctgc
     2581 tcgaagtgct tgggccgccc cgtgcgctcc tcaatctccg gctcgaacat gaactcgacg
     2641 taggactgct gccagtagtg cgcctcggtg cctacggccg ggatgtcgag ccggtgagcg
     2701 gcctccatgt tcgacgtgtc gttgaagccg ccgatgaagg cgtaggtcgc cacgtcaacc
     2761 gcgcgctcga tgtcgccgtt gcggcgcagg gagaagtcgg agagccagcg gtcacccgcg
     2821 gccatgcgca ggcgcatcgc tatcgaggcc gtcgtcatcg gcaggtcgaa ggcgtgctcg
     2881 aactttatct cctgcgcctg cgtcagcccg aaggcgccgg ttatgtcggc gaagggctgg
     2941 cccgcgaaca tgagggtgcc ggggcggacg gcccggattg tgcccgcgaa gtttatgtcc
     3001 tcgacggcgc gggcgaagag tgcgagcccg ccgcgatcct gttcgagcgt gcgcaggcgc
     3061 gggcggtcaa cgcgcaggtc gaggagtgag cgcagcagcc gctcgtggcc gaggcagggc
     3121 gcgaacggga gcttccgctg cgtgacgtag aaggtcgcct cggcgtcgct cagaggcccg
     3181 ccgcgcaggc gcgtcacgtc cttgtaggac gcgtcgccca tcgtggcgtg gtagcggtca
     3241 atgttgagca ttagacgatt tccgcgccgg cctcttgcat ctcggcgagg gcgcgccggt
     3301 cgtcgccggc ttcgaggttg acggcgcgca tggcgtcgcg gacggcgcgc acgcggaagc
     3361 ccgagcgcag cgcgtcgagg acggtgttct tgacgcagta gtccgtggcg aggccgccga
     3421 cccagacctc gcggacgccg cgggagcgca gcatctcggc gaggcccgtc ccgtcgaagg
     3481 ccgagtagca gtcctcgtcg cccagcccct tcgatacgac ctcgatgcg
//
LOCUS       DASPKR010000303         4133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1464180, whole genome shotgun sequence.
ACCESSION   DASPKR010000303 DASPKR010000000
VERSION     DASPKR010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4133)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4133
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1464180"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..310)
                     /locus_tag="VD968_08395"
     CDS             complement(<1..310)
                     /locus_tag="VD968_08395"
                     /inference="COORDINATES: protein motif:HMM:NF014919.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14443.1"
                     /translation="MTWRLELGARPTGEGTLFRVWTPLAETVAVKLLGDAPQTVSMGR
                     GEEDIFEAFVPGVGAGADYFYLLDGERERPDPVSRSQLAGVHGPSRVVDPDEFKWTDE
                     G"
     gene            complement(330..3206)
                     /gene="treY"
                     /locus_tag="VD968_08400"
     CDS             complement(330..3206)
                     /gene="treY"
                     /locus_tag="VD968_08400"
                     /EC_number="5.4.99.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR02401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047470 - (1,4)-alpha-D-glucan
                     1-alpha-D-glucosylmutase activity [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malto-oligosyltrehalose synthase"
                     /protein_id="HYE14444.1"
                     /translation="MQARIPVSTYRLQFNHLFTFEQAAALVGYFDELGVTDLYSSPVL
                     KARPGSPHGYDVVDHARLNPEVGTEDEFASLARALRERGMGLLMDVVPNHMCIAGGEN
                     RWWLDLLENGPSSPFARFFDVDWNPPNPSMKNRVLLPILGEQFGRVLERQEARLSYRD
                     GAFYLSYYETTLPVAARTSTAVLGLALDDLKSRLEDSHEDVLELESIMTSLSHLPPRT
                     ESDPARLRERRREKEVAKRRLSSLVKGSNEVRAAVHAAVERANGRKGRPESFDLLEEL
                     IQNQAYRLSFWRVASDEINYRRFFDINELAAVRVEERPVFTAVHDVTLRLVRQGLITG
                     LRVDHVDGLHDPFKYLNDLQREACSVKTEEGEGGGEPACYVVVEKILGHDEQLGRDWP
                     VHGTTGYDFMNLLNGLYVDAANGQALRELYGEFTGAHTKFGDLLYECKRLILKAAMSS
                     ELYVLSRRLGRIAAQHRYSRDFTLNSLHHALGEVIACFPVYRSYIRRAQNYVGPDDRL
                     NINAAVRAAKRRNPAQDPSVFDFIGSVLLLEDPRGLAPQQRAERRDFVMRFQQLTSPV
                     TAKGLEDTAFYRFYPLSSLNEVGGEPAIIGTPRDRFHERNGDRQETWPHTLSATSTHD
                     TKRGEETRSRINVLSEIPEEWNRAIHRWRELNRDRKSLIEGAEAPDSNEEYLLYQTLV
                     GTWPLGEISEEAHEEYVGRIQEYMHKALKEAKLHTSWINTNEPYERAVREFVAGVLGR
                     GEGNRFLADFVEFQRLTSRAGMLNSLSQTLLKIASPGVPDFFQGTELWQFTLVDPDNR
                     RPVDYERRRVLLASLGGREGDAEALVAELTRRPEDGRVKLYVTTRALRFRRERAALFQ
                     RGEYVPLPARGRRERNVVAFARKYETGEALAVASRFFTQLGVGESGPLRLGAEAWGDT
                     ALETEGGGRFRDVFTGREFEAVGDALAVAQVLSPLPVALLERVG"
     gene            3604..>4133
                     /locus_tag="VD968_08405"
     CDS             3604..>4133
                     /locus_tag="VD968_08405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14445.1"
                     /translation="MKGLFTRLSLAALALACVAAAAVAVQARQQQQSPPPFTVQEILK
                     LKRVGDPQLSPDGKWVAYTVAVPDVAANRSRTQIYVVPVSGGEPKQLTTGDSSSTAPR
                     WSPDGRRLAFTTGGQIWTMSADGADRKQVTNISTGAADPVWSPDGRWLAFASDIYPDC
                     ADDECNKRREAEAEAN"
BASE COUNT          648 a         1387 c         1397 g          701 t
ORIGIN      
        1 agccttcatc cgtccactta aactcgtcgg ggtcaacgac gcgcgagggg ccgtggacgc
       61 ccgcgagctg ggagcgcgag accgggtcgg gccgctcgcg ctcgccgtcg agcaggtaga
      121 agtagtccgc gccagcgccc acgccgggga cgaaggcttc gaagatgtcc tcctccccgc
      181 gccccatcga gacggtctgc ggcgcgtcac ccaagagctt gaccgcgacc gtttcggcca
      241 gcggtgtcca cacccggaag agcgtcccct cgcccgtcgg gcgtgcgccc agctccaaac
      301 gccaagtcat aaaatcatcc ccaggctctc taacccacgc gctctagcag cgcgaccggc
      361 agcggcgaca aaacttgtgc gacggcgagc gcgtcgccca ccgcctcaaa ctcgcgcccc
      421 gtgaaaacgt ccctgaagcg cccgccgcct tccgtctcaa gggcggtgtc gccccacgcc
      481 tcggcgccga gccgcagagg ccccgactcg cctacgccca gttgcgtgaa gaagcgcgag
      541 gcgacggcca gcgcctcgcc ggtttcatac ttgcgcgcga aggcgacgac gttgcgctcc
      601 ctgcgcccgc gcgcagggag cggcacgtac tcgcccctct ggaagagcgc ggcccgctcg
      661 cggcggaagc gcagagcgcg cgtcgtcacg tagagcttca cgcgcccgtc ctcgggccgg
      721 cgggtaagct ccgcgacgag ggcctccgcg tcgccttcgc gaccgccgag cgaggcgagc
      781 agcacgcgcc gcctttcgta atccactggc ctgcggttgt cggggtcaac gagggtgaac
      841 tgccaaagct ccgtgccttg aaaaaagtcc gggacgcccg gcgaggcgat cttcaggagc
      901 gtctgcgaga gcgagttgag catcccggcg cgagaggtca ggcgctggaa ctcgacgaag
      961 tcggcgagga agcggttccc ttcgccgcgc ccgagcacgc ccgcgacgaa ctcgcgcacg
     1021 gcgcgctcgt aaggctcgtt cgtgtttatc cagctcgtgt gcagtttcgc ctccttcagg
     1081 gccttgtgca tgtactcctg aattcggccc acgtactctt cgtgcgcttc ctcgctaatc
     1141 tcaccgagcg gccacgttcc tacgagcgtc tggtagagga ggtattcctc gttggagtcg
     1201 ggcgcctccg cgccctcgat gagcgacttc cggtcgcggt tcagctcgcg ccagcggtgt
     1261 atggcgcggt tccactcctc gggaatctcg gagaggacgt ttatgcgcga gcgcgtctcc
     1321 tcgccgcgct tcgtgtcgtg agtggaggtc gcggagagcg tgtgcggcca ggtctcctgc
     1381 cggtctccgt tgcgctcgtg gaagcggtcg cggggagtgc cgatgatggc gggctcgccg
     1441 ccgacttcgt tcagggagga gagcgggtag aagcggtaga aggccgtgtc ctccaaaccc
     1501 ttcgccgtga cggggctcgt gagctgctgg aagcgcatga cgaagtcgcg gcgctcggcg
     1561 cgctgctgcg gcgcgagccc ccgggggtct tcgagcagga gcacggagcc tatgaagtcg
     1621 aagacggaag ggtcttgcgc ggggttgcgg cgcttggccg cgcggacggc cgcgttgatg
     1681 ttcagccggt cgtcggggcc gacgtaattc tgtgcgcggc gtatgtagct gcgatagacg
     1741 gggaagcagg caatgacctc gccgagcgcg tggtgcaggc tgttcagggt gaagtcgcgc
     1801 gagtagcggt gctgcgcggc gatgcggccg agcctgcgcg aaagcacata cagctcgcta
     1861 gacatcgcgg ccttcaggat gaggcgcttg cactcgtaga gcaggtcgcc gaacttcgtg
     1921 tgcgcgcccg tgaactcgcc ataaagctcc cggagcgcct ggccgttcgc cgcgtcaacg
     1981 tagaggccgt tcaagaggtt catgaagtcg tagccggtcg tgccgtgcac gggccagtcg
     2041 cgccccagtt gctcgtcgtg gcctagaatc ttctccacga cgacgtagca ggccggctcc
     2101 ccgccgccct ccccttcctc ggtcttcacc gagcacgcct cgcgctgaag gtcgttgagg
     2161 tacttgaacg gatcgtgcag gccgtcaacg tgatccacgc gcaggcccgt tatgagcccc
     2221 tgccggacga gccggagcgt cacgtcgtgg acggccgtga agacgggccg ctcctctacg
     2281 cgcacggccg cgagctcgtt gatgtcgaag aagcgccggt agtttatctc gtcggaggcg
     2341 acgcgccaga agctcaggcg gtaagcctgg ttctgtataa gctcttcgag cagatcgaag
     2401 ctctcgggcc tgcctttccg cccgttcgcg cgctcgaccg cagcgtggac ggccgcgcga
     2461 acctcgttgc tgcccttcac gagggaggag agccgccgct tcgccacctc cttctcgcgc
     2521 cgacgctcgc gcagacgcgc cgggtcgctc tccgtgcgcg gcggcaggtg cgagagcgag
     2581 gtcattatgc tttcaagctc gagcacgtcc tcgtgcgagt cttccaggcg cgacttcagg
     2641 tcgtcgagcg cgagccccag cacggccgtc gaggtgcgcg ccgcgaccgg cagagtcgtc
     2701 tcgtagtagc tcaggtaaaa cgcgccgtcg cggtaggaga gtcgcgcctc ctgccgttcg
     2761 agcacgcgcc cgaactgctc gccgagtatg ggaagcagca cgcggttctt catcgagggg
     2821 ttgggcgggt tccagtccac gtcgaagaag cgcgcgaagg gcgagctggg gccgttctcc
     2881 agcaggtcca gccaccagcg gttctcgccg cccgcgatgc acatgtggtt cggcaccacg
     2941 tccatcagaa ggcccatccc gcgctcgcga agcgcgcggg cgagcgaggc gaactcgtcc
     3001 tcggtgccga cctcggggtt gaggcgcgcg tggtcaacca cgtcgtagcc gtgcgggctg
     3061 ccgggcctcg ccttgagcac gggcgacgag tacaagtccg tcacgcccag ctcgtcgaag
     3121 tagccgacga gcgcggcggc ctgctcgaag gtgaagaggt ggttgaactg tagcctgtag
     3181 gtcgagacgg ggatgcgtgc ctgcactgct ctcttgatta cctgcctgaa gtggagtcgg
     3241 gcgcggcgag agccgccccc gccgctcgct cgcgctgctc gggccggccg ctcggtgctc
     3301 tcctgccttt attgcctttc cggtggcagt gattctaacc gagcaggggt cacaattaaa
     3361 gttcgtgaag gtacgttaat tgtcacgcgc cacgggctct gtacgttgag ggacagtggg
     3421 ctgacagcgc cgccgttaag gccggggttc tcgtagggag tagttttccg cccagtcagg
     3481 agccgtcgcg gattacggcc cgcgcggcct cgcgttactg actgccggcc ggcttctgtg
     3541 ttaaagtctt cggcgttcct gccgacaatt tcatcaaaaa agtctcttcg gagggagtgg
     3601 tttatgaaag gtcttttcac gcgcctgagc ttggccgcgc tcgcgctcgc ctgcgtcgcg
     3661 gccgcggccg tcgccgttca ggcgcggcag cagcagcagt cgccgccccc gttcaccgta
     3721 caggagattc tcaagctcaa gcgtgtcggc gacccgcagc tttcgcccga cggcaagtgg
     3781 gtggcctaca ccgtcgccgt ccccgacgtt gccgcgaacc gcagccgcac gcaaatctac
     3841 gtcgtcccgg tctcgggcgg cgagccgaaa caactgacta cgggcgactc gtcctcgacg
     3901 gcgccgcgct ggtcgcccga cgggcgccgc ctcgccttca ccaccggcgg ccagatatgg
     3961 acgatgagcg cggacggcgc cgaccgcaag caggtcacta acatctcgac gggcgctgcc
     4021 gaccccgtct ggtcgcccga cggccgctgg ctcgccttcg cgtccgacat ttacccggac
     4081 tgcgccgacg acgagtgcaa caagcggcgc gaggccgagg ccgaggccaa caa
//
LOCUS       DASPKR010000304         2490 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1464212, whole genome shotgun sequence.
ACCESSION   DASPKR010000304 DASPKR010000000
VERSION     DASPKR010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2490)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2490)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2490
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1464212"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(68..1768)
                     /locus_tag="VD968_08410"
     CDS             complement(68..1768)
                     /locus_tag="VD968_08410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14446.1"
                     /translation="MTRILQFAAPLAASLLAALFCHAPSAGAQEEHRHQHEHSEQLGR
                     VSFPVSCNAQAQRHFNHAVAWLHSFEYEQAEKVFTEVTAADPRCGMGYWGIAMSNYHP
                     IWAPPSAEELKKGREAVEKAKALGAQTPRERDYIAAVEVFYKDSERLDHRARALAYSD
                     AMERLQRRYPSDREAGVFYALTLIAKGMMAGDKSYINEKKAARILNRVLAREPRHPGV
                     THYLIHSYDYPALAHLALPAARSYARIAPASAHAQHMPSHIFTRMGLWQEAIRSNLDA
                     KAAAVAYAARNRMPGAWDEQLHAMDYLAYAYLQGAQDKQARGVLDELNKLRRVDPPNF
                     KVAYAFTAIPARYALERRQWAEAAKLPFPPGSMETFPWERYRWAESHTRFARAVGAAR
                     TGDAAAARQEVEKLADIRRGLAEVKGDYDWAKQAEIKHQIASAWLAHAEGRHEEALGL
                     MRAAADLDDTTDKHPVTPGSLLPAREQLGELLLELKQPAAALREFEAALRSAPNRFNG
                     LYGAARAANLAADRRKAKAYYGKLVALSRHADGDRPEIAEAKEFLAGANVKLSANKRD
                     "
     gene            2065..>2490
                     /locus_tag="VD968_08415"
     CDS             2065..>2490
                     /locus_tag="VD968_08415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14447.1"
                     /translation="MNDSGFWIEENVLSGRECDSLAEALSPSPSGRRRAGARNLMSHP
                     RVAEVAHDYRLLRVARRALGEGAVPYRATIFEKSRRANWMVAWHQDTALPLTARFDSP
                     GWGPWSEKAGVLYAHAPAWALSRVLALRVHLDASTAENGP"
BASE COUNT          344 a          834 c          859 g          453 t
ORIGIN      
        1 ccgccttcgg gggcggcggt cgccgtcacg gtctcgccca gatggtgacg cagccagatg
       61 cccacgttta atccctctta ttcgcggaca gcttaacgtt cgcgccggcg aggaactcct
      121 tcgcctccgc gatctccggc ctgtcgccgt ccgcgtggcg gctgagcgcc acgagttttc
      181 cgtaatacgc cttcgccttc ctccgatccg ccgcgaggtt ggccgcgcgc gccgcgccgt
      241 aaagcccgtt gaagcggttg ggcgcgctgc ggagcgccgc ctcgaactcc cgtaaggcgg
      301 cggccggctg cttaagctcc agcagcagct caccgagttg ctcgcgcgcc ggcaggagcg
      361 agccgggggt gacggggtgt ttgtcggtcg tgtcgtccag atccgccgcc gcgcgcatca
      421 ggccgagcgc ctcttcgtgc ctgccttcgg cgtgcgcaag ccacgccgac gcgatctgat
      481 gtttgatctc agcctgcttg gcccagtcgt aatcgccttt gacttcggcg agcccgcgcc
      541 gtatgtcggc taatttctcg acctcctgac gcgccgcggc cgcgtcgccg gtgcgcgcgg
      601 ccccgactgc gcgcgcgaag cgggtgtggg attcggccca gcggtagcgc tcccagggga
      661 acgtctccat cgagccgggg gggaagggca gcttggcagc ctcggcccac tgccgccgct
      721 cgagcgcgta gcgggcgggg atggccgtga aggcgtaggc cactttgaag ttcggcgggt
      781 caactctccg aagcttgttc agttcgtcga gcactccccg cgcctgcttg tcctgcgcgc
      841 cttgaaggta ggcgtaggcg aggtagtcca tcgcgtgaag ctgctcgtcc cacgcgccgg
      901 gcatgcggtt cctggcggcg taggcgacgg ccgcggcctt cgcgtcgagg ttcgagcgta
      961 tcgcctcctg ccacaggccc atccgcgtga agatgtgcga aggcatgtgc tgcgcgtgcg
     1021 ccgacgcggg cgcgatcctc gcgtagctcc gcgcggcggg cagcgcaagg tgcgccagcg
     1081 ccgggtagtc gtagctgtga atcaggtagt gcgtgacgcc ggggtgccgc ggctcgcgcg
     1141 cgagcacgcg gttcaaaatc cgcgcggcct tcttttcgtt gatgtaactc ttgtcgcccg
     1201 ccatcatccc cttcgcgatg agcgtcagcg cgtagaagac gccggcctcg cggtctgacg
     1261 ggtaacgccg ttggagccgc tccatcgcgt cgctgtaggc gagcgcgcgc gcacggtggt
     1321 cgagcctttc ggagtctttg taaaagacct caaccgccgc gatgtaatca cgctcccgcg
     1381 gggtctgcgc gcctagcgcc tttgccttct cgacggcttc cctgcccttc ttcagctcct
     1441 ccgcgctcgg cggcgcccag atagggtggt agttgctcat cgctatgccc cagtagccca
     1501 tgccgcatcg cgggtctgcc gccgtgactt ccgtgaagac cttttcggcc tgctcgtact
     1561 cgaaagaatg gagccaggcg accgcgtggt tgaagtgcct ctgggcctgt gcgttgcagg
     1621 agacggggaa gctgacccgc ccgagctgtt ccgagtgctc gtgctggtgc cggtgctcct
     1681 cctgcgctcc ggccgagggg gcgtgacaga aaagggccgc cagaagggac gcggcgagcg
     1741 gtgcggcgaa ctgaagaatg cgtgtcacgg attcttctcc tttcagggag cagtagagcg
     1801 ggaaagcgtt gggctgtcct aaacggtatt tgggcagaac cgcttttatg ctaaagccgg
     1861 cggccctgtc aaatgactgc ccggctcgaa tcgaattggc gccgcggcct ccgcggtaga
     1921 agcccgcgga ggccgcggcg tagcgctcct tgcgcctcaa acgccccgcg cttgcctctc
     1981 gttaatgttt gctggttcaa ttggcgacca ttgggcggca agctccgata caatcgcggc
     2041 cgagctctac cggcaactga atagatgaac gactccgggt tctggataga agagaacgtc
     2101 ctctccgggc gcgagtgcga ctcgcttgcc gaggcactgt ccccgagccc gtcggggcgg
     2161 cgacgcgcgg gcgcgcgcaa cctgatgtct cacccgcgcg tcgctgaggt ggcgcacgac
     2221 taccgcctgc tccgggtagc gcggcgcgcc ctcggggagg gggccgtgcc gtaccgcgcc
     2281 acgatcttcg agaagtcgcg gcgggcgaac tggatggtcg cctggcacca ggacacggcc
     2341 ctgccgctca cggcgcgctt cgactcgccg gggtgggggc cgtggtcgga gaaggcgggc
     2401 gtcctctacg cgcacgcgcc cgcgtgggcg ctctcgcgcg tgctggccct gcgcgttcac
     2461 ctcgacgctt cgacggccga gaacggcccg
//
LOCUS       DASPKR010000305         4682 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_298156, whole genome shotgun sequence.
ACCESSION   DASPKR010000305 DASPKR010000000
VERSION     DASPKR010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4682)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4682
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298156"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1195)
                     /locus_tag="VD968_08420"
     CDS             complement(<1..1195)
                     /locus_tag="VD968_08420"
                     /inference="COORDINATES: protein motif:HMM:NF019619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYE14448.1"
                     /translation="MKGAAFDSLAKLLEPCPEGEFLDSSWGKAFRHVRGGAGKFSGLM
                     PWESLNEILGRNRLDFPRLRIVRDGKTVPAADYIRHVKPRRGATIPRLVPAEIISQLR
                     GGATLVLDAVNELHEPVEELAAALEFKFHESVQVNLYAGWQTSRGFDLHWDDHDVFIL
                     QVTGRKRWSLYGETRPNPVSGDAEEAERPAGPPVWDETLEDGDLLYIPRGCWHVAFPL
                     AEPTLHLTVGVHKRRGLDLLRWLSERMKASEAFRADLPRFASQEERRAHSARLREEFL
                     AEWDAEALERFFAEADAKAEPRARLSLPWSATTEALPRDGGAVVRWAPPRPVEFKVEG
                     GVVEFECVGRRWRFSEDALAVLKPLSERRVCTVAELCEGAQKRLAERTVRALLRDLLL
                     NGLVAV"
     gene            complement(1204..1449)
                     /locus_tag="VD968_08425"
     CDS             complement(1204..1449)
                     /locus_tag="VD968_08425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14449.1"
                     /translation="MSAADGDSDAADVSGDSDSGILGGDSDATDADTSDADASDADGT
                     DAGDSTESESGLGGENPLGLNRERTQPPPTDSDGDDS"
     gene            1725..3974
                     /locus_tag="VD968_08430"
     CDS             1725..3974
                     /locus_tag="VD968_08430"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE14450.1"
                     /translation="MRLKRITALALLASLCGAYTFAPPAASQGEEVVRIDTELVQTDV
                     MVFDKGGKFVEGLKPEQFELKVDGRPFKIAFFERVSAGSLREQMLTAARAPDAQRGVR
                     APAAADRGRTIVFFADDVHLSAQSINKTRKAIEQFIEKEMAPFDQAVVASATGQIGFL
                     QQFTDSPAVLRAALARLNHRSFVVRDMEHVPMSEYDALRVEAGDRDTLSHFSALLVKE
                     YNIEIGGAAAGVGPPQGGSIFTKPTMSSGRPVGLTREAAEKMVKERASRILRESSNIS
                     MATLTSLETLVRNTAQYPGRKLVYFFSDGFYLNDKNTGFGDKLKRITDAALRSGVVIY
                     TLDARGLVSMTDAGSNKFDTVGKLSRSSVGELAASQDPLFSLAEDTGGRALLNSEALG
                     DGVSRALRDTSNYYLLAWRPETQEQRDGKFKRVEVSVVGRPDLTVRVARGFYDLPKGA
                     APPGDAAAKQPAASAAQPKTPDSEIREALLDFGPRHALPTLVDAGFIDTPANGPVLAA
                     SAQVAADALSYGADGKQPANVELAGIILNTDGKSVGGFKTRLSNIQPIPPERRGAEAD
                     SVTYTHRTPLAPGIYQVRVAARDEQSGRVGSARKWVEIPDLKSGQLTLSSLLVGEQKA
                     APVGAQNASAPRGAGAGPEMSFSVDHRFARASRLNFVMFIYNAARPAGGPPDLAAQVQ
                     VFRDSQTIVNTPLRPLSVEGVQDLSRVPYFGSFPLQTLSPGRYLLQVNVTDRAGQRTA
                     AQRTGFIIE"
     gene            4263..>4682
                     /locus_tag="VD968_08435"
     CDS             4263..>4682
                     /locus_tag="VD968_08435"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HYE14451.1"
                     /translation="MNENGDKRALIVVDVQNDFCPGGSLAVERGDEVVAPLNRLMEEF
                     LSRGDVVVKSRDWHPAETKHFAKYGGTWPVHCVQGTRGAEFHPSLLDDPRIEVVSKGL
                     GDEDCYSAFDGTGLAEMLRSRGVREVWVGGLATDYCVK"
BASE COUNT          733 a         1662 c         1585 g          702 t
ORIGIN      
        1 ccacggcgac gagcccgttg agtagaaggt cgcgcagaag cgcccgcacc gtccgctccg
       61 cgagcctctt ctgcgcgccc tcgcacagct cggccacggt gcagacgcgc cgctcgctca
      121 acggctttag caccgctagc gcgtcttcgc tgaagcgcca ccgccgcccg acgcattcga
      181 actcgacgac gccgccttca accttaaact ccacggggcg cggcggcgcc cagcggacga
      241 cggcgccgcc gtcgcggggc agcgcctcgg tcgtcgcgct ccaagggagg ctcaggcgcg
      301 cgcgcggctc ggctttcgcg tccgcctccg cgaagaagcg ctctagcgct tcggcgtccc
      361 actcggccag gaactcttcg cgcagccgcg ccgagtgcgc ccgcctttcc tcctgcgaag
      421 cgaagcgcgg caggtcggcg cggaaagcct cgctcgcctt catgcgctcc gagagccagc
      481 gcagcaggtc gagcccgcgc cgcttgtgca cgccgaccgt caggtggagc gtgggctcgg
      541 ctagcgggaa ggcgacgtgc cagcagccgc gggggatgta gagaaggtcg ccgtcttcga
      601 gcgtctcgtc ccagacgggc ggccccgcgg ggcgctcggc ctcctcggcg tcgcccgaga
      661 cggggttcgg ccgcgtctct ccgtagaggc tccagcgctt gcggcccgtg acctgtagga
      721 tgaaaacgtc gtggtcgtcc cagtgcaggt cgaagccgcg cgaggtttgc cagccggcgt
      781 agaggttcac ctgaacgctc tcgtggaatt tgaattcgag cgcggcggcc agctcctcga
      841 cgggctcgtg gagttcgttg acggcgtcga ggacgagcgt ggcgccgccc cgcagttgcg
      901 agatgatttc agcggggacg aggcggggga tggtggcgcc gcgccgcggc tttacgtgac
      961 ggatgtaatc ggcggccggg actgtcttcc cgtcgcggac gatgcgcagg cgcgggaagt
     1021 cgaggcggtt gcggccgagt atttcgttca ggctctccca gggcatcagc cctgaaaact
     1081 tccccgcccc gccgcgcacg tgcctgaaag ccttgcccca ggaggagtcg aggaactccc
     1141 cttcggggca aggctccagg agtttggcta ggctgtcgaa ggccgcgccc ttcatgccgc
     1201 cttttaagag tcgtcgccgt ccgagtcggt cggcgggggc tgcgtgcgct cgcggttcag
     1261 gccgagcggg ttctcgccgc cgagccccga ctcggactcg gtcgagtcgc ccgcgtcggt
     1321 gccgtccgcg tccgaggcgt cggcgtcgga ggtatcggcg tccgtggcgt ccgagtcgcc
     1381 gccgaggatg ccggagtcgg aatcgcccga aacgtccgcg gcgtccgagt cgccatcagc
     1441 cgcgctcatg cgcctagtcc ccccgagcgg ctcggaagac agcaaaaggc cggattcaga
     1501 agacacctgt tcctctgccc tgtcggcatt aacctggtct gacattcgtc tcctcctcgt
     1561 ctgtgttggg aatcgcttgc cgccaagctt actgcgcccg ccgccaaacg acaagagcct
     1621 cgccggggcg ccggatttcc cttgcccgcg gcggccggcg aggttagact cgaaacctcc
     1681 acgggcgccg gagaggcgca cacagcccgg ccgaggtaat aaccatgcga ctcaaaagaa
     1741 tcaccgcact cgccctgctc gcctcgctct gcggggccta caccttcgcg ccgcccgccg
     1801 cctcccaggg cgaggaggtc gtccgcatag acacggagct agtgcagacg gacgtgatgg
     1861 tcttcgacaa gggcggtaag ttcgtcgagg gcctcaagcc cgagcagttc gagctgaagg
     1921 ttgacggcag gcccttcaag atcgccttct tcgagcgagt ctcggccggg agcctgcgcg
     1981 agcagatgct gacggccgcg cgcgcaccgg acgcgcagag gggcgtgcgc gcccccgccg
     2041 cggccgaccg cggcaggact atcgtcttct tcgccgacga cgtgcacctc tcggcccaga
     2101 gcatcaacaa gacgcgcaaa gcaatcgagc agttcatcga aaaggagatg gcgcccttcg
     2161 atcaggccgt cgtggcgtcg gccacggggc agataggctt cctgcaacag ttcacggaca
     2221 gcccggccgt gctgcgggcg gcgctggcgc gcctcaacca caggtctttc gtggtgcgcg
     2281 acatggagca cgtccccatg tccgagtacg acgcgctccg cgtcgaggcg ggcgaccgcg
     2341 acacgctctc gcacttctcg gccctgctcg tgaaggagta caacatcgag atagggggcg
     2401 ccgcggcggg cgtcgggccg ccgcagggcg gctcgatctt cacgaagccg acgatgtcat
     2461 cgggccgccc cgtcggcctg acgcgcgagg ccgccgagaa gatggtcaag gagcgcgcct
     2521 cgcgcatact ccgcgagtcg tcgaacatct cgatggcgac gctcacgtcg ctcgagacgc
     2581 tcgtgcgcaa cacggcgcag taccccggcc gcaagctcgt ctatttcttc tccgacggct
     2641 tctacctcaa cgacaagaac actggcttcg gcgacaagct caagcgcatc acggacgcgg
     2701 ccctgcgctc gggcgtagtc atctacacgc tcgacgcgcg cggcctcgtc agcatgacgg
     2761 acgcgggcag caacaagttc gacaccgtag gcaagctctc tcgctcgagc gtcggcgagc
     2821 tggccgcctc gcaggacccg ctcttctcgc tggccgagga cacgggcggg cgtgcgctcc
     2881 tcaactccga ggcgctgggc gacggcgtaa gccgcgcgct gcgcgacacg tctaactact
     2941 acctgctcgc gtggcggccc gagacgcagg agcagcgcga cggcaagttc aagcgcgtcg
     3001 aggtgagcgt cgtcgggcgc ccagacctga ccgtccgcgt cgcgcgcggc ttctacgacc
     3061 tgccgaaggg cgcggcccct cccggcgacg cggcggcgaa gcagccagcc gcctcggccg
     3121 cgcagccgaa gacgcccgat tcggagattc gagaagccct gctggatttc ggcccgcgcc
     3181 acgccctgcc cacgctcgtt gacgccggct tcattgacac gcccgcgaac ggccccgtcc
     3241 tggcggcctc ggcgcaggtc gcggccgacg cgctctccta cggcgccgac ggcaagcagc
     3301 ccgccaacgt cgagctcgcg ggcatcatac tcaacacaga cgggaagagc gtcggcggct
     3361 tcaagacgcg cctgagcaac atacagccca tcccgcccga gcggcgcggc gcggaggccg
     3421 actccgtgac ctacacgcac cgcacgccgc tcgcgcccgg catctaccag gttcgcgtgg
     3481 ccgcgcgcga cgagcagagc ggccgcgtcg gtagcgcgcg caagtgggtg gagattcccg
     3541 atttgaagtc gggacagtta accttgagca gcctgctcgt aggcgagcag aaggccgcgc
     3601 ccgtcggcgc gcagaacgcc tcggccccgc gcggcgcggg ggcgggcccg gagatgagct
     3661 tcagcgttga ccacaggttc gcccgcgcct cgcgcctcaa cttcgtcatg ttcatctaca
     3721 acgccgcgcg ccccgccggc ggcccgcccg acctcgccgc gcaggtgcag gtcttccgcg
     3781 actctcagac gatagtcaac acgccgctgc gcccgctctc ggtggagggc gtgcaagacc
     3841 tttcgagggt gccgtacttc gggtcgttcc cgctgcaaac gctctcgccc ggccgctacc
     3901 tccttcaggt gaacgtcaca gaccgcgccg ggcagcgcac ggcggctcag cgcacgggct
     3961 tcatcatcga gtgagtcgcg cccgcgggcg gctgtgtgac agacttagcg ccttagcgtg
     4021 aagcctcacg ctaaggcgct aagtgcgggg cgaccgccat gctcacgcgg gggcagaaga
     4081 ggagctacga ggagtagggc tacctgcacc tgcgcggcgt caaccgctcg aaccgcctct
     4141 tcttccgctg aactgtgcgg cctgccgcgc gccgggcagg ccgcggcccg cggccatcgg
     4201 aacttcagcc ggcggccgcg ggctccgttt tcatgcggcg cgcgctgtcg taaaataccc
     4261 gcatgaacga gaacggagac aagcgcgcgc tcatcgtcgt tgatgtgcag aacgacttct
     4321 gccccggggg ctcgctcgcc gtcgagcgcg gcgacgaggt cgtggccccg ctcaaccggc
     4381 tcatggaaga attcctctcg cgcggcgacg ttgtcgtcaa gagccgcgac tggcacccgg
     4441 ccgagacgaa gcacttcgcg aagtacggcg gcacttggcc cgtgcactgc gtgcagggga
     4501 cgcgcggcgc cgagtttcac ccctcgctcc tcgacgaccc tcgcatcgag gtcgtatcga
     4561 aggggctggg cgacgaggac tgctactcgg ccttcgacgg gacgggcctc gccgagatgc
     4621 tgcgctcccg cggcgtccgc gaggtctggg tcggcggcct cgccacggac tactgcgtca
     4681 ag
//
LOCUS       DASPKR010000306         2609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_816780, whole genome shotgun sequence.
ACCESSION   DASPKR010000306 DASPKR010000000
VERSION     DASPKR010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2609)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2609
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_816780"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VD968_08440"
     CDS             <1..208
                     /locus_tag="VD968_08440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14452.1"
                     /translation="ADDEAHYDRHRYAARLYKFDRRRAVFRRFDALRSKEKHESGEAA
                     LEGMKLPRYANLLDNFPAIKEYRN"
     gene            220..966
                     /locus_tag="VD968_08445"
     CDS             220..966
                     /locus_tag="VD968_08445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14453.1"
                     /translation="MTLESIAARTLAFALLVSSSALTAAAQEFNAQYLPFPEGRMRRF
                     PLTRTELDGPAIMSGRGMTVSGVTVREEEGEGGAGRLVFTGRGKGGDEWRVEARSAGP
                     HYEAAYEGDLDRNGVRDLVFAIGTGGNGLAPPTRLVFLTFDRRGLPTLFEATGFFDPR
                     PDGVFDLVDLDGDRRAELVFMAFDDGYWITNLYRVRDSRWSRVSGRFAGLRFPAYTRF
                     THRPNHRPVRPARGRNPVAPDLLEQNRRTP"
     gene            1005..2096
                     /locus_tag="VD968_08450"
     CDS             1005..2096
                     /locus_tag="VD968_08450"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage T C-terminal barrel
                     domain-containing protein"
                     /protein_id="HYE14454.1"
                     /translation="MSEAAERRTEEAAHYGDAGAEYEAVRGAAGVINLSSRGRVEVTG
                     AEAVQFLNGMLTNDVAKLEDGAWVHAALPNVQGRLVASARVIRDGDAFIFDTEAATHA
                     ALFAALERFTPAGDFRVKDLTEETALLSVQGPRAAEVLVAALGDEKLGRLERGRVAVV
                     TLGSGGARARVIRATHTGEDGFDLFVGAASAPSLRGALTAAGARPVGFDAAEVLRIEA
                     GLPRYGADATAENVVLEVVDEDEAVSYTKGCYVGQEIIARIHWRGHVAKKLAGLVLDG
                     GGEGVRPGARLKSGDGARAAGQVTSVARSPRLGRLVALGIVKYDFLAPGTALQVLDDE
                     EEVCGARVSELPHVRGSWHAASEGEGDGR"
     gene            2086..2379
                     /locus_tag="VD968_08455"
     CDS             2086..2379
                     /locus_tag="VD968_08455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14455.1"
                     /translation="MGAEGEGARGGGLAYEQARLAYTIIQSLLEHTRVTQDLVALMAQ
                     VIDAETQEALTGTPYWAAYMDSRRALERTRQDVEKFAEVWTRLAEEAEHRAGS"
BASE COUNT          397 a          906 c          935 g          371 t
ORIGIN      
        1 ggcggacgac gaggcgcact acgaccgtca ccgctacgcc gcccgcctct acaagttcga
       61 ccgccgccgc gccgtgttcc gccgcttcga cgcgctccgc tcgaaggaga agcacgagag
      121 cggcgaggcc gcgctcgaag gaatgaagct tccgcgctac gcgaacctcc tcgacaactt
      181 cccggccatt aaagagtacc ggaactaaac gcccgtctcg tgactctcga atccatcgcc
      241 gcacgcacgc tagccttcgc gctgctcgtc tcgtcatcgg ctctgacggc cgccgcgcag
      301 gagttcaacg cgcagtatct gccgttcccg gaaggccgca tgcgccgctt ccctctgacg
      361 cgaacggagc tggacgggcc ggcgataatg agcgggcgcg ggatgaccgt ctccggcgtg
      421 acggttcgcg aggaggaggg cgagggggga gcggggcggc tggtcttcac gggccgcggg
      481 aagggcggcg acgagtggcg cgtcgaggcg cgctcggccg ggcctcacta cgaggccgca
      541 tacgaaggcg acctcgaccg caacggcgtg cgcgacctcg tcttcgccat aggcactggc
      601 ggcaacggcc tcgcgccgcc gacgcgcctc gtcttcctca ccttcgaccg gcgcggcctg
      661 cccactctct tcgaggcgac aggcttcttc gaccccaggc ccgacggcgt cttcgacctc
      721 gttgacctcg acggcgaccg ccgcgccgag ctggtcttca tggccttcga cgacggctac
      781 tggataacga acctctaccg cgtgcgcgac tcgcgctgga gccgcgtctc gggccgcttc
      841 gccggcctcc gtttccccgc ctacacgcgc ttcacgcacc gccccaacca ccgccccgtg
      901 cgccccgcgc gcggccgcaa ccccgtcgcg cccgacctgc tcgaacagaa ccgccgcacg
      961 ccctgatgcg ccgccccggc ccggcgtgtg ataatggcgg ccggatgagc gaagcggcgg
     1021 aaagaagaac ggaagaggcg gcgcactacg gcgacgcggg cgcggagtac gaggccgtgc
     1081 gcggcgccgc cggtgtaatt aacctctcct cgcgcgggcg cgtcgaagtc acgggcgccg
     1141 aggccgtgca gttcttaaac ggcatgctca cgaacgacgt ggcgaagctc gaggacggcg
     1201 cgtgggtgca cgcggcgctg ccgaacgtgc aagggcgcct cgtcgcgagc gcgcgcgtca
     1261 ttcgggacgg cgacgccttc atcttcgaca ccgaggcggc gactcacgcc gcgctctttg
     1321 cggcgttaga gcgcttcacg cccgcgggcg actttcgcgt gaaggatttg actgaagaga
     1381 ctgcgctcct gtccgtgcag gggccgcgcg cggccgaggt tctggtcgcg gcgctcgggg
     1441 acgaaaagct cgggcggctg gagcgcggcc gcgtcgccgt cgtgacgctc ggctcgggcg
     1501 gcgcgcgcgc gcgcgtcata cgcgcgacgc acacgggcga ggacggcttc gacctgttcg
     1561 tcggcgcggc gtcggccccg agcctccggg gcgcgctcac ggcggcaggc gcgcggcccg
     1621 tcggcttcga cgcggcggaa gtgctgcgca tagaagcggg actgccgcgc tacggcgcgg
     1681 acgcgacggc cgagaacgtc gtgctcgaag tcgtggacga ggacgaggcg gtcagctaca
     1741 cgaagggctg ctacgtcggg caggagataa tcgcgcgaat acactggcgc ggccacgtcg
     1801 cgaagaaact cgcggggctc gtcctcgacg gcggcggcga aggcgtgcgc cccggcgcgc
     1861 gcctcaagag cggggacggt gcgagggcgg ccgggcaggt cacttccgtc gctcgctctc
     1921 cgcggctcgg ccgcctcgtc gcgctcggca tcgtcaagta tgacttcctc gcgccgggga
     1981 ctgcgcttca agtcttagac gatgaggagg aagtttgcgg ggcgcgcgtc tcggagctgc
     2041 cgcacgtgcg cgggagctgg cacgcggcct cggagggaga gggcgatggg cgctgagggc
     2101 gaaggcgcac ggggcggcgg gctcgcttac gagcaggcgc ggctcgccta cacaatcata
     2161 cagtcgcttc tcgagcacac gcgcgttacg caagacctcg tcgcgctgat ggcgcaggtc
     2221 attgacgcag agacgcagga ggccctcacg ggcacgccct actgggccgc ctacatggac
     2281 agccgccgcg cgctggagcg cacgcggcag gacgtggaga agttcgccga ggtctggacg
     2341 cgactggccg aagaggccga gcaccgcgcc ggctcctgaa ggggccgcga caactgtcct
     2401 gattttactg ccccctcatc tcgaaaagtt cccgctcaca actctattgt ctcgcccgag
     2461 gcggcggcac cgcgcttgcc tccaacgccg tgtgaaagga ggtcgtgtgt tgatgagagt
     2521 gatgctgacg gccgtcgcgc tgctcttcgc gctcgcggcg ccgtctcgcg cgcagacctt
     2581 cgaggtcggc ggggcgggcg cgtggcgag
//
LOCUS       DASPKR010000307         2244 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1591891, whole genome shotgun sequence.
ACCESSION   DASPKR010000307 DASPKR010000000
VERSION     DASPKR010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2244)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1591891"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..865
                     /locus_tag="VD968_08460"
     CDS             <1..865
                     /locus_tag="VD968_08460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14456.1"
                     /translation="VFLLAAAMLSTLRLGERLSVRHISALVLALSAIITLRFYVFYML
                     VAAIGGAFLVGMRSVAKQSLARQILIIAVVGMALTYLGVLRTAGSQFDTYANLQTIQR
                     SRADLAATARSGFGQEVNVSTTSGALSAIPVGIVYLLFAPFPWQLANLRQSITLPEML
                     VWWGSFPFLALGVWFTIKYRLRQALPILIFTTMLTLAYSIFQGNVGTAYRQRSQILIF
                     YFIFVSVGFILLRERREDKLREAALARRRSYETSRAIEVEARRRYEKWKSERGQELEV
                     VARNLSEKVDF"
     gene            868..>2244
                     /gene="asnB"
                     /locus_tag="VD968_08465"
     CDS             868..>2244
                     /gene="asnB"
                     /locus_tag="VD968_08465"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HYE14457.1"
                     /translation="MCGIAGFVNSDGRAADADVLASMNAAIRHRGPDEEGAYLKGHVG
                     MAMRRLAIIDLAGGQQPISNEDGSCWIVFNGEIYNFRELKARLEKLGHRFKTDCDTEA
                     VLHAYEEYGADAPKHLRGMFAFAVWDEGRRELFLARDRVGKKPLLYAKVGGSFVFGSE
                     FRALLKHPAVGREVNREAIHHYLSFMCVPAPITAYRDIRKLEPGHSLTLKPDGEIKTR
                     RYWQPDFSKKLDIGEEEAGERALELLREAVRVRLMSEVPLGAFLSGGIDSSTVVALMS
                     EESPSPVKTFSIGFEEQDFSELHHARRVAEHVGADHHEFVVRPEAMEVLPTLVEHYGE
                     PYADSSAIPTYYVSRETRRHVTVALNGDGGDECFAGYERYAAMKLAGTYRRLPNFLRE
                     GVIRQAAGLLPTSELRRTRARSLKRFLAAASLPHVERYLRWVSALDARAKDELYTADF
                     RRETADYDT"
BASE COUNT          365 a          779 c          727 g          373 t
ORIGIN      
        1 agtcttcctg ctggcggcgg ccatgctctc gacgctgagg ctgggcgagc ggctgagcgt
       61 caggcacatc tcggcgctcg tgctggcgct gtcggccatc atcacgctgc ggttctacgt
      121 cttctacatg ctggtggcgg cgatcggcgg ggccttcctc gtcggcatgc gctcggtggc
      181 gaagcagagc ctcgcccgcc agattctcat aatcgccgtg gtcgggatgg cgctcaccta
      241 tctgggcgtg ctcaggacgg ccggctcgca gttcgacacc tacgctaacc ttcaaaccat
      301 acagcgcagc cgcgcagacc tcgccgccac ggcccgctcg ggcttcgggc aggaggtgaa
      361 cgtctcgacg acatccggcg ccttgagcgc aatccccgtc gggatagtct atctgctgtt
      421 cgcgccgttc ccgtggcagt tggcgaacct ccgccagtcc atcacgctgc ccgagatgct
      481 cgtctggtgg ggctcgttcc cgttcctcgc gctgggagta tggttcacta tcaagtaccg
      541 cctgcggcag gccctgccga tactgatatt cacgacgatg ctgaccttgg cctactcgat
      601 attccagggc aacgtcggca ccgcctaccg ccagcggtcg cagatactca tcttctactt
      661 catcttcgtc tcggtgggct tcatcctcct gcgcgagcgg cgcgaggaca agctgcgcga
      721 ggccgcgctc gcccgccgca ggtcgtacga gacttcgcgc gccatcgagg tcgaggccag
      781 gcggcgctac gagaagtgga aaagcgagcg cgggcaggag ctcgaagtcg tggcgcggaa
      841 cctctccgag aaggtggact tctaggcatg tgcggcatcg cgggatttgt caactcggac
      901 gggcgcgcgg cggacgccga cgtgctcgcc tcgatgaacg ccgccatacg ccaccgcggc
      961 cccgacgagg agggcgccta cctcaagggc cacgtcggca tggcgatgcg ccgcctcgcc
     1021 atcattgacc tggcgggcgg gcagcagccc atctcgaacg aggacggctc gtgctggata
     1081 gtcttcaacg gcgagatata caacttccgc gagcttaaag cccggctcga aaaactaggc
     1141 caccgcttca agaccgactg cgacacggag gcggtgctgc acgcctacga ggagtacggc
     1201 gccgacgcgc ccaaacacct gcgcggcatg ttcgccttcg ccgtttggga tgagggcagg
     1261 cgggagctgt tcctcgcgcg cgaccgcgtg ggcaagaagc ctctgctcta cgcaaaagtc
     1321 ggcggctcgt tcgtcttcgg ctccgagttc cgggcgctcc tcaaacaccc ggccgtcggc
     1381 cgcgaggtca accgcgaggc catccaccac tacctctcct tcatgtgcgt cccggcgccc
     1441 ataacggcct accgcgacat acgcaagcta gagcccggcc actcgctcac cctcaagccc
     1501 gacggcgaga taaagacgcg gcgctactgg cagcccgact tctcgaagaa gctcgacatc
     1561 ggggaggagg aggcgggcga gcgcgcgcta gagcttctgc gcgaggccgt gcgcgtgcgg
     1621 ctcatgtcgg aggtgccgct cggggccttc ctctccggcg ggatagattc gagcacggtg
     1681 gtcgcgctca tgagcgagga gagcccctcg cccgtcaaga ccttctcgat tggattcgag
     1741 gagcaggact tctcggagct gcaccacgcg cgccgcgtgg ccgagcacgt cggggccgat
     1801 caccacgagt tcgtcgtccg ccccgaggcg atggaggttc tgccgacgct cgtcgagcac
     1861 tacggcgagc cttacgccga ctcgtccgcc atcccgacct actacgtctc gcgcgaaacc
     1921 aggcggcacg tgacggtggc tttgaacggc gacggcggcg acgagtgctt cgccggctac
     1981 gagcgctacg ccgcgatgaa gctggccggc acgtaccgcc ggctgcccaa tttcttgcgc
     2041 gagggcgtca tccggcaggc ggccgggctg ctccccacgt cggagctgcg ccgcacgcgc
     2101 gcccgctcgc tcaagcggtt cctcgcggcc gcctcgctcc cgcacgtcga acgctacctg
     2161 cgctgggtga gcgcgctcga cgcgcgcgcg aaggacgaac tctacacggc cgacttccgc
     2221 cgcgagaccg ccgactacga cacg
//
LOCUS       DASPKR010000308        10131 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_171132, whole genome shotgun sequence.
ACCESSION   DASPKR010000308 DASPKR010000000
VERSION     DASPKR010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10131)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10131
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171132"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(217..1350)
                     /locus_tag="VD968_08470"
     CDS             complement(217..1350)
                     /locus_tag="VD968_08470"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020257696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HYE14458.1"
                     /translation="MTTTTTRVPLLDLRRQHEALREELRAAVGRVLDSQQFILGEDVR
                     LLETELTRYTRTAHAVGCGSGSDALLLALLALDVGEGCEVITTPFTFFATAGAVARAG
                     ARPVFVDIEPRTYNINPALVAGAVTPRTRALMPVHLYGQCAEMGEILAEAARHDIPVI
                     EDAAQAIGAEDRGRQAGSMGAVGCFSFYPTKNLGAAGEAGLLTTNDARLAERLRRLRA
                     HGGATEYRHEEVGFNSRLDTLQAAILRVKLPHLDSWSQARRDRAARYTRLLEEAGLTD
                     FVTPPYVRPDALHIFHQYVVRVAADRRDALIEHLKQGGVGTKIYYPVPLHLQDCFRHL
                     GYECGDFPESERAARETLALPMFPELTDDEQHYVVETIARFFA"
     gene            complement(1385..2404)
                     /locus_tag="VD968_08475"
     CDS             complement(1385..2404)
                     /locus_tag="VD968_08475"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HYE14459.1"
                     /translation="MSVTVGVIGCGYWGPNLIRNFAEAGGAELRWVCDADARRLDRMA
                     RRYPAARASTDYRELLADPRLDAVVIATPVATHYPFARRALEAGKHVLVEKPFTASVR
                     EAEELIETAERRGMALMVDHTFIYTGAVRKIKEIVESGELGDLLYFDSVRINLGLFQH
                     DVNVVWDLAPHDFSIMDYVVGRRPVAVSATGSSHIEPGIENIAYVQLRFDDSFIANFH
                     FNWLSPVKIRRTLIAGSRKMIVYDDIEPTEKVRVYDSGVTRTERALDEEETYKTLVSY
                     RTGDVWVPKLDMTEALHYVCAEFLDSINRSRPSASDAAAGLRVVRLLEAAQGSIREGG
                     RWVSL"
     gene            complement(2438..3574)
                     /locus_tag="VD968_08480"
     CDS             complement(2438..3574)
                     /locus_tag="VD968_08480"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HYE14460.1"
                     /translation="MTVPFVDLKAQYRSIKSEIDEAIRRVLDSSAFILGPEVEAFESA
                     FADYVGAEFCAGVANGTAAVQLAVTACGVGPGDEVIVPANTFFATAEAVSTAGATPVF
                     VDCDPATSNIAPEKIEAAVTPRTRAVIPVHLYGQPADLDPIFEIAARHGLSVIEDAAQ
                     AHGAEYKGRRVGALGRAGCFSFYPGKNLGAYGEGGAVTTNDPEVARRVRLLRDHGSER
                     KYRHDVVGYNFRLEGMQGAVLRVKLKHLDAWNELRRAHAARYRELLAAPAREGLIELP
                     AEAPYARHVYHLFVVRADARDRLQQHLAAEGVQTGIHYPVPVHLQPAYASLGRREGDF
                     PESERQARRALSLPMFAELTDEQLARVAEAVHNFYGRRPASAGA"
     gene            complement(3614..4105)
                     /locus_tag="VD968_08485"
     CDS             complement(3614..4105)
                     /locus_tag="VD968_08485"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HYE14461.1"
                     /translation="MLEPEFCCIAPDVRLGRGVRIYRFVNLYGCEIGDETRIGTFVEI
                     QKGARVGARCKISSHTFICEGVEIEDEVFVGHGVMFINDRRPRATRPDGAPQAEGDWE
                     LERTVVRRGASIGTNATILGGIEIGERATIGAGSVVTRSVPPGATVAGNPARIIKAVA
                     SDK"
     gene            complement(4105..6522)
                     /locus_tag="VD968_08490"
     CDS             complement(4105..6522)
                     /locus_tag="VD968_08490"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HYE14462.1"
                     /translation="MMSPDNRLMPLTPSETLDRPLRDLTQPAPAAPAPAASTEPAHLR
                     EYLAVVLKRKWLILSLAVVVTSLVAIQMYRLPSVYEAATTIQIEQRSRSVLQTGRAGD
                     LVIKSSDPTYWQTQLKKLETQKLARQVIMRLDLQNNPKFLNPSRGTGIIAGLRRVITR
                     EQPKQQQEADMGVPVLNPNELSADTVTPEMALKLEPYEDALRENLTVEPVERTSLVNL
                     RFRHTDPEIAQNVANTMAAIFRDNDIREETMGSNRAEDVLARQIIDLQERIQANTQRR
                     LNYKQSHSLPLGAKAGQDLNAVRLQTYSAQLQEAEARRKDAEAAYRVALDTRNSQGIW
                     SVPAVQGDKTVQRLREKISDLEERRAALLVNYTPEWPEVKKIDEQLKRLKEDLERAPN
                     EIVNTLKANYEAAVKKERDVSAAYYAERSRANASSIAETGLADLDQAIETDRQNLNLY
                     QQRLNELKVTTGDRTPNVTQVEEARLPRAPIGPPRVRNIIIALLLSLGVGIGLAFLLD
                     YLDDTLKSVEDVDRHLHLPTLALIPAPREARRLLGHYARQAPDPSEAKALALIEDVRS
                     PVAEAYRHLRTSLLLSSAGQPPRTVLVTSSQPSEGKTTTVVNIATMLAQTGADVLVLD
                     CDLRRPRVHAHFAMSNSRGVTNYLSGESNVSELVQTYEKLPNLKIITSGPVPPNAAEL
                     LGSDEMRKLLYVLSENFTHIIIDSPPAISFTDASILSTMVDGVMLVVHGGRSSRAVVR
                     RAKQQLQDVGAHIFGIVLNNVKLEANDYYYYSGYYSGYYGDEEERAPEGAEAAGAGGP
                     GGGAGVS"
     gene            complement(6673..7518)
                     /gene="rfbD"
                     /locus_tag="VD968_08495"
     CDS             complement(6673..7518)
                     /gene="rfbD"
                     /locus_tag="VD968_08495"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: protein motif:HMM:NF016228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HYE14463.1"
                     /translation="MRVLITGAGGMVGRCAAEHCRNLGDEVEAFERARLDITDDRGVR
                     EAFGRARPDSVINCAAWTDVDGCELDPQRAFLVNSQGVEVLAAAARSVGANFVTISTD
                     YVFDGAKEGFYTQRDDPHPASAYGAAKLEGERRAQMASARTVVVRSGWIFGPGGKNFL
                     ATVAERARRGERLKAISDAYGTPTYAPDLAARLRELAELDLPGVFHVVNAGEGTSFEG
                     FTRAAVEVVGADGVEVETVTMASLNRPAPRPRNSRLRCLLSEAIGLEPLRDWRDALAE
                     FASNR"
     gene            complement(7582..8598)
                     /gene="rfbB"
                     /locus_tag="VD968_08500"
     CDS             complement(7582..8598)
                     /gene="rfbB"
                     /locus_tag="VD968_08500"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007846915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HYE14464.1"
                     /translation="MKKLFVTGGAGFIGSAFVRLLLEELPGCEVTNFDALTYAGNLDN
                     LAGLEGDGRHRFVRGDIADREAVMAALGDGADAIVNFAAESHVDRSINSADEFIRANV
                     FGTQVLLDAARARGVRRFVQISTDEVMGSLPDDDTAFFTEESPFAPNSPYSASKAAAE
                     HFVRAAHHTHKLDTVVTRCGNNYGPRQFPEKFLPLMLANAMSDQPIPVYGDGRNVRDW
                     IYVEDHCRAILDVMLRGRPGEAYNIGARNQRRNLEVAEGVLDALGKPRSLIRFVKDRP
                     GHDLRYAIDPSKIEAELGWRPRETWESGLEKTIRWYADNAAWVERARSGSYRDYYAKQ
                     YGTV"
     gene            complement(8634..9884)
                     /locus_tag="VD968_08505"
     CDS             complement(8634..9884)
                     /locus_tag="VD968_08505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14465.1"
                     /translation="MTACALLFLAVFAARAGFFAWRGALTGGDTADYLLLASNIAEHG
                     AFSLDTAEPFTPTIRRAPLYPLFLALAGGSTTVVILLQSALDAVVALLVLMLARLAGA
                     PTRWAFAAGAAYAIHPGAIASASTILSEPLFAFTMTVSAALLSSGLARDRLPLTAAGG
                     AAFAVASLCRPIAVFYPLAVVAAMPLLLRRQPRRGAHAAALVVCLAVVLAPWVVRSSA
                     LAGRFVLVQGLSAANFYMASRWDLNQQDEQQMYRKVFAPESGDPYGHALAEAKTPPEL
                     AATDRVAMREGVANIGRAPLSYLAMRARSVPYLFLTSFDRFTGLHSSFGSLRAGGRWG
                     ALALKAAMLVLFALLPFALALASLRRGFDNAAALVCACGWGYTLLIHLPMWIEYRFWS
                     PVVPLLLVSAALGARRLTGAVLRR"
     gene            complement(9914..>10131)
                     /locus_tag="VD968_08510"
     CDS             complement(9914..>10131)
                     /locus_tag="VD968_08510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14466.1"
                     /translation="ERAGFRVLKSVYFDSAGVLPWWVKYRVLRSERMEPGAVKFYDDF
                     FVPPLRRLEALVPPPIGKNILMVAEKV"
BASE COUNT         1545 a         3256 c         3691 g         1639 t
ORIGIN      
        1 cctttcacag tcccggcgag ggcgtcagtc gaatcgcttt ttctttccat gagcgggaag
       61 cggtgccggc aaaaagggta acagtcaggg cggagaagcc ccgcgaccgg cggggagtat
      121 atcacggcgc gtcgcgccgg aggcgggcta agggatgaac ccgtcaaacg ggagcgcccg
      181 gccggattgg cggggcaaca aaaaacaatc cccggctcag gcgaagaagc gggcgatggt
      241 ctcgacgacg tagtgctgct cgtcgtcggt aagctcgggg aacatgggca gggcgagcgt
      301 ttcgcgcgcg gcgcgctcgg actcggggaa gtcgccacac tcgtagccga ggtggcggaa
      361 gcagtcctgt aggtgcagcg ggacggggta gtagattttg gtgccgacgc cgccctgctt
      421 caggtgctcg atgagggcgt cgcggcggtc ggcggcgacg cgcacgacgt actggtggaa
      481 gatgtgcagg gcgtcggggc gcacgtaggg cggcgtgacg aaatcggtca ggccggcctc
      541 ttcgagcagg cgcgtgtaac gggcggcgcg gtcgcggcgg gcctgcgacc acgaatccag
      601 gtgcgggagc ttcacgcgga ggattgcggc ctgcaaggtg tcgagccggc tgttgaagcc
      661 gacctcctcg tggcggtact cggtcgcgcc gccgtgcgcg cgcaggcgcc ggaggcgctc
      721 ggccagccgc gcgtcgttcg tcgtcagaag gccggcctcg cccgccgcgc ccaaattttt
      781 ggtcgggtag aagctgaagc agccgaccgc gcccatcgag cccgcctgcc tcccgcggtc
      841 ttcggccccg atggcctgcg cggcgtcctc gatgacgggg atgtcgtgcc gcgcggcctc
      901 cgcgagaatc tcgcccatct cggcgcactg gccgtagagg tgcacgggca tgagcgcccg
      961 cgtgcgtggc gttacggccc cggcgacgag cgcggggttg atgttgtatg tgcgcggctc
     1021 tatgtccacg aagacggggc gcgcgcccgc gcgggcaacg gcgcccgccg tggcgaagaa
     1081 ggtgaaggga gtggttatga cctcgcatcc ctcgccgaca tcgagggcga ggagggcgag
     1141 aagcagcgcg tccgagcctg agccgcagcc gaccgcgtgc gccgtccgcg tgtagcgcgt
     1201 aagctccgtc tccaggagcc gcacgtcctc gccgagtatg aactgctgcg agtcgagcac
     1261 gcggcccacc gccgcgcgca actcctcgcg cagcgcctcg tgctgccgcc gcaggtcgag
     1321 caggggaacg cgcgtcgtcg tcgttgtcat tcgcgtcaag gggccttcga cttttgcgcc
     1381 cgcctcacag gctcacccag cggccgccct cgcgtatcga gccctgcgcg gcttcgagca
     1441 ggcggacgac gcggaggccg gcggcggcgt ccgacgccga cgggcgcgag cggtttatcg
     1501 agtcgaggaa ctccgcgcag acgtagtgca gcgcctccgt catgtcgagc ttcggcaccc
     1561 acacgtcgcc cgtgcggtag ctgacgagcg tcttgtaggt ctcctcctcg tcgagcgcgc
     1621 gctccgttcg cgtcacgccg ctgtcataga cgcgaacctt ctcggtcggc tcgatgtcgt
     1681 catagacgat catcttccgg ctgccggcga tgagcgtgcg gcggattttc acgggcgaga
     1741 gccagttgaa gtggaagttg gcgatgaagg agtcgtcgaa ccgtagctgc acgtaggcga
     1801 tgttctctat gccgggctcg atgtggctgc tgcccgtggc gctcacggcc acggggcggc
     1861 gcccgacgac gtagtccatg atggagaagt cgtgcggggc caggtcccac acgacgttaa
     1921 cgtcgtgctg gaacaggccg aggtttatgc gcacggagtc gaagtagagc aggtcgccga
     1981 gctcgccgct ctcgactatc tccttaatct tgcggacggc gcccgtgtat atgaaggtgt
     2041 gatccaccat gagcgccatg ccgcgccgtt cggccgtctc gattagctcc tcggcctcgc
     2101 gcacgctcgc cgtgaagggc ttctcgacga ggacgtgctt tccggcttcg agcgcccggc
     2161 gcgcgaacgg gtagtgggtg gcgacgggcg tggctatgac gacggcgtcg aggcgcgggt
     2221 cggctaggag ctcgcggtag tcggtcgagg cgcgcgcggc cgggtatcgt cgcgccatcc
     2281 tgtccagccg gcgcgcgtcg gcgtcgcaga cccagcgcag ctccgccccg cccgcctccg
     2341 cgaagttgcg gatcaggttt ggcccccagt agccgcagcc tatgacgcca accgtgacac
     2401 tcatctcgat aaaaattgcg gcggcacggc cgggccctca cgcgcccgcc gacgccggcc
     2461 tccggccgta aaagttatgt accgcctcgg ccacgcgcgc gagctgctca tctgtcagtt
     2521 ccgcgaacat cgggagcgag agggcgcggc gcgcctggcg ctccgactcg gggaagtcgc
     2581 cctcgcggcg gccgagcgag gcgtaagccg gctgtaggtg gacggggacg gggtagtgta
     2641 tgccggtctg gacgccctcg gcggcgaggt gttgttggag gcggtcgcgc gcgtccgccc
     2701 gcacgacgaa gaggtgatag acgtggcgcg cgtaaggcgc ctcggccggc agctcgatga
     2761 gcccctcgcg cgcgggcgcg gcgagcagct cgcggtagcg cgcggcgtgg gcgcggcgca
     2821 actcgttcca ggcgtcgagg tgtttgagct tgacgcggag cacggcgccc tgcatgcctt
     2881 cgagccggaa gttgtagccg actacgtcgt ggcggtactt gcgctcggag ccgtggtcgc
     2941 gcagcagccg cacgcggcgc gccacctccg ggtcgttcgt cgtgacggcg ccgccctcgc
     3001 cgtaggcgcc taggttcttc ccagggtaga agctgaagca gccggcgcgg ccgagcgcgc
     3061 cgacgcggcg ccccttgtac tcggcaccgt gcgcctgcgc cgcgtcctct atgacggaga
     3121 ggccgtgccg ggcggcgatc tcgaaaatgg ggtcgaggtc tgccggctgg ccgtagaggt
     3181 ggacggggat gacggcgcgc gtgcggggag ttacggcggc ctcgattttt tcgggggcga
     3241 tgttggaggt cgccgggtcg cagtcaacga agacgggcgt tgcgcccgcg gtcgagacgg
     3301 cctcggccgt ggcgaagaag gtgttagcgg ggacgatgac ctcgtcgccc ggcccgacgc
     3361 cgcatgccgt cacggccaac tgcacggccg cagtcccgtt cgccacgccc gcgcagaact
     3421 cggcgccgac gtagtcggcg aaggcgctct cgaacgcctc gacctcgggg ccgaggatga
     3481 aagccgagct gtcgagcacg cgccggatgg cctcgtcaat ctccgacttg atcgagcggt
     3541 actgcgcctt taagtcaacg aaagggactg tcataaaaaa gcggtgacaa gcggcgggcg
     3601 ggacaaacgc ccgtcacttg tcactcgcga ctgccttgat tattcgcgcg gggttgccgg
     3661 cgacggtggc tccggggggg acgctcctgg tcaccactga gccggcgccg atggtggcgc
     3721 gctcgcctat ctcgatgccg ccgaggatgg tcgcgttcgt gccgatggag gcgccgcggc
     3781 gcacgaccgt tcgctccaac tcccagtcgc cttcggcctg cggcgccccg tctgggcgtg
     3841 tggcgcgggg gcggcggtcg ttaatgaaca tgacgccgtg gccgacgaag acctcgtcct
     3901 ctatctcgac gccctcgcag atgaaggtgt ggctcgaaat cttgcagcgg gcgccgacgc
     3961 gcgcgccctt ctgtatctcg acgaacgtcc ctatgcgcgt ctcgtcgcct atctcgcagc
     4021 cgtagaggtt gacgaagcgg tagatgcgca cgccgcgccc gaggcgcacg tccggcgcga
     4081 tgcagcagaa ctcgggctca agcatcaact gacgccggcg ccgccgcccg gcccgccggc
     4141 cccggcggcc tccgccccct cgggcgcgcg ctcctcctcg tcgccgtagt agcccgagta
     4201 gtagcccgaa tagtagtagt agtcgttcgc ctccagcttc acgttgttca gcacgatgcc
     4261 gaatatgtgc gcgcccacgt cctgcaactg ctgcttggcg cggcggacga cggcgcgcga
     4321 cgagcggccg ccgtggacga cgagcatcac gccgtcaacc atcgtcgaga gaatcgaggc
     4381 gtcggtgaac gagatggccg gcggcgagtc aatgatgatg tgcgtgaagt tctccgagag
     4441 cacgtagagg agcttgcgca tctcgtcgga gccgagcagc tcggccgcgt tcggcggcac
     4501 ggggccggag gtgatgatct tcaggttcgg cagcttctcg taggtctgaa ccagctccga
     4561 gacgttcgac tcgcccgaga ggtagttagt caccccccgc gagttcgaca tggcgaagtg
     4621 ggcgtggacg cgagggcgcc ggaggtcgca gtcgagcacg agcacgtccg cgccggtctg
     4681 cgcgagcatc gtggcgatgt taacgaccgt cgttgtcttg ccctccgagg gctggctcga
     4741 ggtgacgagc accgttcgcg ggggctggcc ggcgctcgac aggaggagcg acgtgcgaag
     4801 gtggcggtag gcctcggcga cgggcgagcg cacgtcctcg atgagggcga gcgccttggc
     4861 ctcggacggg tcgggcgcct ggcgcgcgta gtggccgagc aggcgcctcg cctcgcgcgg
     4921 cgccggtatg agcgcgagcg tcgggaggtg caggtggcgg tcaacgtcct cgaccgactt
     4981 cagcgtgtcg tcgaggtagt cgagcaggaa ggcgaggccg atgccgacgc ccagagagag
     5041 cagcagcgcg atgatgatgt ttcgcacgcg cggcgggccg atgggcgcgc gcggcaggcg
     5101 cgcctcctcg acctgcgtga cgttgggcgt gcggtcgccc gtcgtaacct tcagctcgtt
     5161 caggcgctgc tggtagaggt tcaggttctg gcggtcggtc tcgatggcct ggtcgaggtc
     5221 ggccagcccc gtctcggcga tgctcgaagc gttggcgcgc gagcgctcgg cgtagtaggc
     5281 ggcgctcacg tcgcgctcct tcttgacggc ggcctcgtag ttcgccttga gcgtgttgac
     5341 tatctcgttg ggcgcgcgct ccaagtcctc cttgagccgc ttgagctgct cgtcaatctt
     5401 cttgacctcg ggccactccg gcgtgtagtt gacgaggagg gcggcgcggc gctcttcgag
     5461 gtcgcttatc ttctcgcgca ggcgctgcac ggtcttgtcg ccctgcacgg ccggcacgga
     5521 ccagatgccc tggctgttgc gcgtgtcgag cgcgacgcgg taggcggcct ccgcgtcctt
     5581 gcgccgggcc tctgcctcct gcaactgcgc gctgtaggtc tgaaggcgca ccgcgttcaa
     5641 gtcctgcccg gccttcgcgc cgagcggcag gctgtggctc tgcttgtagt tgaggcggcg
     5701 ctgcgtgttg gcctgtatgc gctcctgcaa atcaattatc tgtcgggcga gcacgtcctc
     5761 ggcccggttc gagcccatcg tctcctcgcg tatgtcgttg tcgcggaaga tggccgccat
     5821 cgtgttggcg acgttctggg ctatctcggg atccgtgtgg cggaagcgta ggttgacgag
     5881 gcttgtgcgc tcgacgggct cgaccgtcag gttctcgcgc agcgcgtcct cgtagggctc
     5941 tagcttcagc gccatctcgg gcgtgacggt gtccgcgctc aactcgttcg ggttgagcac
     6001 ggggacgccc atgtcggcct cctgctgctg cttgggctgc tcgcgcgtga tgacgcgccg
     6061 caggccggcg atgatgccgg tgccgcggct cgggttcagg aacttggggt tgttctggag
     6121 gtcgaggcgc atgatgacct ggcgtgcgag cttctgcgtc tcgagcttct tgagctgtgt
     6181 ctgccagtag gtcgggtcgc tgctcttgat gacgaggtcg cctgcgcggc ccgtctgaag
     6241 cacgctgcgg ctccgctgct cgatctgtat ggtcgtcgcg gcctcataga cggagggcag
     6301 gcggtacatc tgaatcgcga cgaggcttgt gacgacgacg gcgaggctca gtatgagcca
     6361 cttgcgcttg agcacgaccg cgaggtactc gcgcaggtgg gcaggctccg tggaggcggc
     6421 cggggccggg gccgcgggcg ccggctgcgt aaggtcgcgc agcgggcggt cgagcgtctc
     6481 cgagggcgtg agcggcatca ggcggttatc tggcgacatc ataagcgtaa ctcttcccgg
     6541 gtcaggtaga agcggatcgg tcaaggagat tccaagcgcg taatgatagc agagaccgac
     6601 ccggcggcaa attgcggagc ggcggatttc ggattgcgga ttaaggagaa tgcccggctc
     6661 tccaatccgc agtcagcggt tggaggcgaa ctcggcgagg gcgtcgcgcc agtcgcgcag
     6721 gggctcgagg ccgatggctt cggagagcag gcagcgcagg cgcgagttgc gcgggcgcgg
     6781 ggcggggcgg ttgagcgacg ccatcgtgac ggtctctacc tcgacgccgt cggcgcccac
     6841 gacctcgacg gccgcgcgcg tgaagccctc gaagctggtg ccttcgcctg cgttgacgac
     6901 gtgaaagacg cccggcaggt ctagttcggc cagctcgcgc agtcgcgcgg cgaggtcggg
     6961 cgcgtaggtg ggcgtgccgt aggcgtccga gatggctttg agccgctcgc cgcggcgggc
     7021 gcgctccgcc accgtcgcga ggaagttttt gccgccgggg ccgaaaatcc agcccgagcg
     7081 gacgacgaca gttcgcgccg aggccatctg cgcgcgacgc tcgccttcga gcttcgccgc
     7141 gccgtaagcg ctcgccgggt gcgggtcgtc gcgctgcgtg tagaagccct ccttcgcgcc
     7201 gtcgaagacg tagtcggtcg agatggtgac gaagttcgcg cccacagagc gcgccgcagc
     7261 cgccagcacc tcgactccct gcgagttgac gaggaaggct cgctgcgggt ctagctcgca
     7321 gccgtcaacg tccgtccacg cggcgcagtt gatgacagag tcggggcgcg cgcggccgaa
     7381 ggcttcgcgc acgccgcggt cgtctgtgat gtcgagccgc gcgcgctcaa acgcctcgac
     7441 ctcgtcgccc aaattccggc agtgctccgc cgcgcaccgc cccaccatcc cgcccgcgcc
     7501 cgtgattaag actcgcatac tgtgtatgag gaagctggaa gcccggatag gatgactcgt
     7561 cccggcccct gactctgccc tttataccgt cccgtactgc ttcgcgtagt agtcgcggta
     7621 ggagccgctg cgcgcgcgct cgacccaagc ggcgttgtcg gcgtaccagc gaatggtttt
     7681 ttcgaggccg ctctcccacg tctcgcgcgg gcgccagccc agctcggcct ctatcttcga
     7741 cgggtctatg gcgtagcgaa ggtcgtggcc gggccggtct ttgacgaagc gtatgagcga
     7801 gcgcggcttg ccgagcgcgt cgagcacgcc ctcggcgact tcgaggttgc ggcgctggtt
     7861 gcgcgcgccg atgttgtatg cctcgccggg gcggccgcgg agcatcacgt ctaggatggc
     7921 gcggcagtgg tcttcgacgt aaatccagtc gcgcacgttg cggccgtcgc cgtaaacggg
     7981 tatgggctgg tcgctcatgg cgttcgccag catcagcggc aggaacttct cggggaactg
     8041 gcgggggccg tagttgttgc cgcagcgagt gacgaccgtg tcgagcttgt gcgtgtggtg
     8101 cgcggcgcgg acgaagtgct cggccgcggc cttcgaggcc gagtaggggc tgttcggcgc
     8161 gaagggcgac tcctcggtga agaaggccgt gtcgtcgtcg ggcaggctcc ccatcacctc
     8221 gtcggtcgag atttgaacga agcgccggac gccccgggcg cgcgcggcgt ctaagagaac
     8281 ctgcgtgccg aagacgttgg ctcggatgaa ctcgtcggcc gagttgatgc tacggtcaac
     8341 gtgcgactcg gcggcgaagt tcactatcgc gtcggcgccg tctccgagcg cggccatgac
     8401 ggcctcgcgg tctgctatgt cgccgcggac gaagcggtgg cggccgtcgc cctcaaggcc
     8461 cgcgaggttg tcgaggttgc ctgcgtaagt gagcgcgtcg aagtttgtga cctcgcagcc
     8521 cggcagctct tccagcagga ggcgcacgaa tgccgagcct atgaagcccg ccccccccgt
     8581 cacgaataat tttttcatcc cggccaatat tacactccga atttgttttc gggctaacgg
     8641 cgcagcacgg cccccgtaag gcggcgcgcc ccgagggccg cgctcacgag cagcaggggg
     8701 acgaccggcg accagaagcg gtactcgatc cacatcggca ggtgaatcag aagcgtgtac
     8761 ccccacccgc aggcgcacac cagcgccgcc gcgttgtcga agccgcggcg caaactcgcc
     8821 agcgccagcg cgaaggggag cagcgcgaag agcacgagca tcgcggcctt cagggcgagc
     8881 gccccccacc gccccccggc gcgcagcgag ccgaaggagg agtgcagccc cgtgaagcgg
     8941 tcgaagctcg taaggaagag gtaaggcact gagcgcgcgc gcatcgcgag gtaagagagc
     9001 ggcgcccgcc cgatgttggc tacaccctcg cgcatcgcca cgcgatccgt ggccgcgagc
     9061 tcgggcggcg tcttggcttc ggcgagcgcg tggccgtagg ggtcgcccga ctccggcgcg
     9121 aacaccttcc ggtacatctg ctgctcgtcc tgctggttca agtcccagcg cgaggccatg
     9181 tagaagttcg cggccgagag gccctgcacc agcacgaagc ggcccgcgag ggccgagctc
     9241 cttacgaccc acggcgcgag cacgacggcg aggcagacga cgagcgcggc cgcgtgcgcg
     9301 cccctgcgcg gctgccggcg cagcagcagc ggcatcgccg ccacgacggc gagcgggtag
     9361 aagacggcga tgggcctgca cagcgacgcg acggcgaagg cggccccgcc agccgcggtc
     9421 aaaggcagcc ggtcacgcgc gagcccggag gacaagagcg ctgccgagac ggtcatagta
     9481 aaagcgaaga gcggctcgga gagtattgtc gaggccgaag caatcgcgcc ggggtggatg
     9541 gcgtaagccg cgcccgccgc aaaggcccag cgtgttggcg cacccgcgag gcgcgcgagc
     9601 atgaggacta gtagggccac aacggcgtcg agcgccgact ggagcaatat gacgacggtt
     9661 gtcgagccgc cagcgagcgc gaggaagagc gggtagaggg gcgcgcggcg tatggtcggc
     9721 gtgaagggct cggccgtgtc gaggctgaag gcgccgtgct cggcgatgtt gcttgcgagc
     9781 agtaggtagt cggccgtgtc gccgccggtg agcgccccgc gccaggcgaa gaagccggcg
     9841 cgcgcggcga agaccgcgag gaagagcaac gcgcaggctg tcaagaagcg acgccccact
     9901 ggctgaccct gcactaaacc ttctccgcaa ccatcagtat gttcttgccg atgggcggtg
     9961 ggacgagcgc ctcaagcctc ctgagcggcg gcacgaagaa gtcgtcgtaa aacttaacgg
    10021 cgcccggctc catacgctcc gagcgcagca cgcggtactt gacccaccac ggcagcacgc
    10081 ccgccgagtc gaaatagaca gacttgagca cgcggaagcc cgcgcgctcg g
//
LOCUS       DASPKR010000309         3486 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1206205, whole genome shotgun sequence.
ACCESSION   DASPKR010000309 DASPKR010000000
VERSION     DASPKR010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3486)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3486
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1206205"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1897)
                     /locus_tag="VD968_08515"
     CDS             complement(<1..1897)
                     /locus_tag="VD968_08515"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HYE14467.1"
                     /translation="MRNKLKLFVTALACAAAAAWFLRGALPAGGSAAEAAPAAQTLSA
                     PFQRKVLDTAPEAPFELRFFTTAVKTDSRGRIITGPTSDPVKNIVGAEPAGERGGLQR
                     FTKIMYGASYIDGRPDPGTRIDPNNPQVKSGNQFWPLVKQPFRSQPRALALSQDGRKL
                     YVTLPGREGYPDWRVAVVDTASRRVSKWIDLRPAGETRGLRPIGVKAAPINTAISARP
                     YVVVLNQYGNFASVIDATSDTVVGEFETGFYGEKLVFNRAGTRLYITDRYKDAVRAFR
                     VSPGPTFTQIALIPTGNTPLERSNPRDLDLSADGRTLYVANTLGHTVAAINVESDANT
                     LVKVLPVGGLSTDVKIVGRWGIVSGQETNTRLNEPETGHGLPTKNASGVAIRNNGQPL
                     GYTPVMTDATKATTFDDIGSELNIFDTQTNRFVFRYVDEGRDISQLVTPGQFVDLGDH
                     NAAQEIIRGSGPEQMFVRGDMLFVTYAHSEQVQAFRINVNASDPSQVLTPLDIERTGG
                     ITPQGVEVSPDGRTIYVANFQTEDVSFLSVGTNGNLTRQGFLPVGVTNSTPDPTTGGT
                     GQNLFATAEEQGLRWFFSSSYSDDGQKSCGFCHWDGRQDGCQWNVAANAVGGTKVCPQ
                     NKDISDNW"
     gene            2089..>3486
                     /locus_tag="VD968_08520"
     CDS             2089..>3486
                     /locus_tag="VD968_08520"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE14468.1"
                     /translation="METDSGRTTSVWMATADVPAGESLAGDTSADVCVVGAGIAGLST
                     AYLLTREGKSVVVLDDGPLAGGETSRTTAHLTNALDDRYYELERLHGERGARLAAESH
                     TAAIDLIEEIVTEEGIDCDFERLDGYLFVPPGESTEQLGWELRAAHRAGLTEVEYVER
                     LPYDAYDFGAALRFPYQGQFHILKYIRGLAEAIKRRGGRIYTGAHADEIEGGAEAHVK
                     TSDGFTVSAGAIVVATNTPVNDLVAIHTKQAPYRTYVIGARVPSGSVPRFLYWDTPDP
                     YHYVRTQSVEGYDVLIVGGEDHKTGQAEDFDERFRRLEEWARERFPMIEGVELRWSGQ
                     VMEPVDGMAYIGRNPLDSDNVLIATGDSGNGMTHGTIAGRLLTDLIVGRPNEWATLYD
                     PSRKSLRAAGEYAKENLNVAAQYTDLLTGGEVESAEEVRPGEGAVMRRGLTKVALYRD
                     EQGTLYERSAICAHLG"
BASE COUNT          540 a         1122 c         1253 g          571 t
ORIGIN      
        1 gccagttgtc ggagatgtcc ttgttctgcg ggcagacctt cgtgccgccg acggcgttgg
       61 cggcgacgtt ccactggcag ccgtcctgcc ggccgtccca gtggcagaag ccgcaggact
      121 tctgcccgtc gtccgagtag gacgaggaga agaaccagcg cagcccctgc tcctcggccg
      181 tggcgaagag gttctgcccc gtgccgccgg tggtcgggtc gggcgtggag ttcgtgacgc
      241 cgacggggag gaagccctgc cgcgtcaggt tgccgttcgt gccgacgctc aggaaggaca
      301 cgtcctcggt ctggaagttg gcgacgtaga tggtgcggcc gtcgggggag acttcgacgc
      361 cctgcggcgt gatgccgcca gtgcgctcga tgtcgagcgg cgtgagcacc tgcgaggggt
      421 cggaggcgtt cacgttgatg cggaaggcct gcacctgctc cgagtgcgcg taggtgacga
      481 agagcatgtc gccgcggacg aacatctgct cggggccgct gccccggatt atctcctgcg
      541 ccgcattgtg gtcgccgagg tcaacgaact gccccggcgt gaccagctgc gagatgtcgc
      601 ggccttcgtc aacgtagcgg aagacgaagc ggttggtctg cgtgtcgaag atgttcagct
      661 cggagcctat gtcgtcgaag gtcgtggcct tcgtcgcgtc ggtcatgacg ggcgtgtacc
      721 cgagcggttg gccgttgttg cgtatggcga cgccgctcgc gttcttcgtc ggcaggccgt
      781 ggcccgtctc cggctcgtta aggcgcgtgt tcgtctcctg gcccgagacg atgccccagc
      841 ggccgactat cttcacgtct gtcgagaggc cgccgacggg cagcaccttg acgagagtgt
      901 tggcgtccga ttcgacgttt atcgcggcta cggtgtggcc gagcgtgttg gcgacgtaga
      961 gcgtgcggcc gtcggcgctc aagtccaggt cgcgcgggtt cgagcgctcg agcggcgtgt
     1021 tgccggtggg gatgagggct atctgcgtga acgttgggcc gggactgacg cggaaggcgc
     1081 gcaccgcgtc cttgtagcgg tcggtgatgt agaggcgcgt gcctgcgcgg ttgaagacga
     1141 gcttctcgcc gtagaagccg gtctcgaact cgccgacgac ggtgtcgctt gtggcgtcaa
     1201 tcacgctcgc gaagttgccg tactggttga gcacgacgac gtagggccgc gcgcttatcg
     1261 ccgtgttgat cggcgcggcc ttgacgccta tgggccggag gccgcgagtc tcgcccgcgg
     1321 gccggaggtc tatccacttc gagacgcggc ggctggcggt gtccacgacg gcgacgcgcc
     1381 agtccgggta gccctcgcgg ccgggcagcg tgacgtagag cttgcggccg tcctgcgaga
     1441 gcgcgagcgc gcgcggctgg ctgcggaacg gctgcttgac gagcggccag aactggttgc
     1501 cgctcttgac ctgcgggttg ttcgggtcaa tgcgcgtgcc ggggtcgggg cgcccgtcta
     1561 tgtagctggc gccgtacatg attttggtga agcgctggag gccgccgcgc tcgcccgcag
     1621 gctcggcgcc cactatgttc ttgacggggt cgctggtcgg gcctgtgatg atgcggccgc
     1681 gcgagtccgt cttgacggcc gtcgtgaaga acctcagctc gaagggcgcc tcgggcgcag
     1741 tgtcgagcac ctttctctgg aagggcgcgg agagcgtctg ggctgcgggc gcggcctcgg
     1801 ccgccgagcc gcccgcgggc agcgccccgc gcagaaacca cgccgcggcc gcggcgcatg
     1861 cgagcgccgt gacgaagagc ttcagcttgt ttcgcatctt ttcgtgctcc gtcggaagtg
     1921 gtgccaatcg tcggggacac tcgtacagag ccgcgccgga acaaagaaat acgggccggc
     1981 gaaaaaaatt cgggcgcgcg cgggcgccgc cccgacggtg acggctttgt gaaattatcg
     2041 gggtaagaat ggcggggccg gggagccgtt tgaagagagg agagacttat ggagaccgac
     2101 tcggggcgga cgacttccgt ctggatggct acggccgacg tgccggccgg cgagagcctc
     2161 gcgggggata cgagcgcgga cgtttgcgtc gtgggcgcag gcattgcggg cctttcgacc
     2221 gcgtacctcc tgacgcgcga aggcaagtcc gtcgtcgtct tagacgacgg ccccctcgcg
     2281 ggcggcgaga cttcgcgcac gaccgcgcac ctcacgaacg cgctcgacga ccgctactac
     2341 gagctcgagc gcctgcacgg cgagcgcggc gcgcggctcg cggccgagag ccacacggcc
     2401 gccatagacc tcatcgaaga gatagtgacc gaggagggga ttgactgcga cttcgagcgc
     2461 ctcgacggct acctgttcgt cccgcccggc gagtcaaccg agcagctcgg ctgggagctt
     2521 cgcgccgcgc accgcgccgg cctcaccgaa gtcgagtacg tcgagcgcct cccctacgac
     2581 gcgtacgact tcggcgccgc gctccgcttc ccttatcagg gccagttcca catcctgaaa
     2641 tacatacggg gccttgccga ggccatcaag cgccgcggcg gccgcatcta cacaggcgcg
     2701 cacgccgacg agattgaggg aggcgccgag gcgcacgtca agacctcgga cggcttcacg
     2761 gtgagcgcgg gcgccatagt cgtcgcgacc aacacgcccg tcaacgacct cgtcgcgata
     2821 cacaccaaac aggcgcccta ccgcacctac gtcataggcg cgcgcgtccc ctccggctcc
     2881 gtgccgcgct tcctctactg ggacacgccc gacccatacc actacgtccg cacccagtcg
     2941 gtcgaggggt acgacgtgct catcgtcggc ggcgaggatc acaagacggg gcaggccgag
     3001 gacttcgacg agcgcttccg ccgcctcgaa gagtgggcgc gcgagcgctt ccccatgata
     3061 gagggcgtcg agctgcgctg gtcggggcag gtgatggagc ccgttgacgg catggcctac
     3121 atcggccgca accccttaga cagcgacaac gtccttatcg ccaccggcga ctccggcaac
     3181 ggcatgacgc acggcaccat agcgggccgg ctgctcacgg acttgatagt ggggcgcccg
     3241 aacgagtggg ccacgctcta cgacccttcg cggaagtcct tgcgcgccgc gggcgagtac
     3301 gcgaaggaga acttaaacgt cgccgcgcag tacaccgacc tgctcaccgg cggcgaggtc
     3361 gagtcggccg aagaggtgcg gcccggcgag ggcgccgtca tgcggcgggg gctgacgaag
     3421 gtcgccctct accgcgacga gcagggaacg ctttacgagc gctcggccat ctgcgcccac
     3481 ctgggc
//
LOCUS       DASPKR010000310         2437 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1852452, whole genome shotgun sequence.
ACCESSION   DASPKR010000310 DASPKR010000000
VERSION     DASPKR010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2437)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2437
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1852452"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2437)
                     /locus_tag="VD968_08525"
     CDS             complement(<1..>2437)
                     /locus_tag="VD968_08525"
                     /EC_number="4.1.1.71"
                     /inference="COORDINATES: protein motif:HMM:NF008907.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="multifunctional oxoglutarate
                     decarboxylase/oxoglutarate dehydrogenase thiamine
                     pyrophosphate-binding subunit/dihydrolipoyllysine-residue
                     succinyltransferase subunit"
                     /protein_id="HYE14469.1"
                     /translation="LGEHDFYARIFRDLGIAYQPMRWARDYNPALLGRYDAREEVGKQ
                     ARVLELINAYRVRGHLIADIDPLNALPIQYHPELDIETYGLTIWDLDREFITGGLAGK
                     EIATLREILDVLRRAYCGKVGTEYRHIQSKEQKVWVRERIRQEFVHPEPLPAETRKAL
                     LMRLTRAETFERFLHTKYLGQKRFSLEGCETIIPLLDQLVERAAEKGVEDITLGMAHR
                     GRLNVLANVVGNFSERIFTAFEGSVHPDFPADEGDVKYHQGATGERETASGRKVRVSI
                     SPNPSHLEFVDSVVEGMVRAKQDALQLAGSPREEVIDRALPVLLHGDAAFAGQGIVME
                     TLQLADLPGYRTGGTIHIIINNQIGFTTSPEDSRSSIYSTDVAKMTQLPIFHINGDDP
                     EAAFRTLRIALDFRQEFNKDVVLDVVGFRKLGHNEGDEPSYTQPLMYARVKAHPGVRA
                     KYAQRLIQEGVVTQEEVDAMIREATERYEASLARAKQIVSERPPKKELPAPAQEEDGS
                     AVVETPVEAGVVREIARSIAVVPEGFNINPKMVSQLARRAKMGEGELPADWAFAELVA
                     FGSLGLEGVRVRLSGQDSGRGTFSQRHAIMYDTQTGKPWVPLTEMTARDGRSLVEVFD
                     SSLSEQGVMGFEYGYSVVARDALVAWEAQFGDFSNGAQVIIDAFIAPGVDKWQQPSRL
                     VLLLPHGYEGQGPEHSSARLERYLQLCAENNMQVCYPTTPAQYFHLLRRQVKQQTARP
                     LVVMTPKSLLRLPAATSSLEELTRGGFRPVIDDEGVADRDAVRRIVLCSGKVFYDLAA
                     ARKQADDYRVAVVR"
BASE COUNT          354 a          788 c          859 g          436 t
ORIGIN      
        1 cggacgacgg cgacgcggta gtcgtccgcc tgcttgcgcg cggccgcgag gtcgtagaag
       61 accttgccgc tgcacagcac gatgcgccgg acggcgtcgc ggtcggcgac gccttcgtcg
      121 tcgatgacgg ggcggaagcc gccgcgcgtc agctcttcga gcgacgatgt cgcggcgggc
      181 aggcgcagga ggctcttcgg cgtcatcacg acgagcgggc gggccgtctg ctgcttgacc
      241 tgccggcgca ggaggtggaa gtactgcgcc ggggtcgtcg ggtagcagac ctgcatgttg
      301 ttctcggcgc agagctggag gtagcgctcg agacgcgccg aggagtgttc cggcccctgc
      361 ccttcgtagc cgtgcggcag gagcagtacg agccgcgagg gctgctgcca cttgtcaacg
      421 cccggcgcga tgaaggcgtc tatgatgacc tgcgcgccgt tagagaagtc gccgaactgc
      481 gcctcccacg cgacgagcgc gtcgcgcgcg acgaccgagt agccgtactc gaagcccatc
      541 acgccctgct ccgacagcga cgagtcgaag acctcgacga gcgagcggcc gtcgcgcgcc
      601 gtcatctcgg tgagcggcac ccagggcttg ccggtctgcg tgtcgtacat gatggcgtgg
      661 cgctgcgaga acgtgccgcg ccccgagtcc tgccccgaga ggcggacgcg cacgccttcc
      721 agtcccagcg agccgaaggc gacaagctcg gcgaaggccc agtcggccgg aagctcgccc
      781 tcgcccatct tggcgcggcg cgcgagctgg ctgaccatct tcgggttgat gttgaagccc
      841 tcggggacga cggcgatgct gcgcgcgatt tcgcgcacga ccccggcctc gaccggcgtc
      901 tctacgacgg ccgagccgtc ctcctcctgc gccggggcgg gaagctcctt cttcgggggt
      961 cgctccgaga ctatctgctt ggcgcgagcg agcgacgcct cgtagcgctc ggtcgcctcg
     1021 cgtatcatcg cgtcaacctc ttcctgcgtg acgacgccct cttgaatcaa ccgctgagcg
     1081 tacttggcgc gcacgccggg gtgcgccttg acgcgcgcgt acatcagcgg ctgcgtgtag
     1141 ctcggctcgt cgccctcgtt gtggccgagc ttgcggaagc cgaccacgtc caggacaacg
     1201 tccttgttga actcctgacg gaagtcgagc gcgattctca acgtgcggaa ggccgcctcg
     1261 gggtcgtcgc cgttgatgtg gaagatgggt agctgcgtca tcttcgcgac gtcggtcgag
     1321 tagatggagg agcggctgtc ctcgggcgag gtggtgaagc ctatctggtt gttgatgatg
     1381 atgtgtatgg tgccgcccgt gcggtagccg ggcaggtctg cgagctgcaa ggtctccatc
     1441 actatcccct gcccggcgaa ggccgcgtcg ccgtggagca gcaccggcag cgcgcggtct
     1501 attacctcct cgcgcggcga gcccgcgagt tgaagcgcgt cctgcttggc gcgcaccatg
     1561 ccctcgacga ccgagtcaac gaactcgagg tggctcgggt tgggcgagat cgagacgcga
     1621 accttcctgc cggaggccgt ctcgcgctcg cccgtcgcgc cctggtggta tttcacgtcg
     1681 ccctcgtctg cggggaagtc cgggtggact gagccctcga aggccgtgaa tatgcgctcg
     1741 gagaagttgc cgacgacgtt ggcgaggacg ttcaggcggc cgcggtgtgc catgccgagc
     1801 gttatgtcct cgacgccctt ctcggccgcg cgctccacga gctggtcgag cagagggatt
     1861 atcgtctcgc agccttcgag gctgaagcgc ttctggccga ggtacttcgt gtgcaggaag
     1921 cgctcgaacg tctcggcgcg cgtgagcctc atcaaaagcg ccttgcgcgt ctcggccggc
     1981 agcggctcgg ggtggacgaa ctcctggcgt atgcgctcgc gcacccagac cttctgctcc
     2041 ttgctctgta tgtgccggta ctcagtgccg accttgccgc agtaggctcg gcggagcacg
     2101 tcgaggattt cgcgcagggt ggcgatctcc ttgccggcca ggccgcccgt tatgaactcg
     2161 cgatccaggt cccagatggt cagcccgtag gtctctatgt ccagttcggg gtggtactgg
     2221 atggggagcg cgtttaaggg gtcaatgtcg gcgatgaggt ggccgcgcac gcggtaggcg
     2281 ttaatcagtt cgaggacgcg cgcctgcttg ccgacctcct cccgcgcgtc gtagcggccc
     2341 agcagcgccg ggttgtagtc cctcgcccag cgcatcggct ggtaggcgat gccgaggtcg
     2401 cggaatatgc gggcgtagaa gtcgtgctcg ccgagca
//
LOCUS       DASPKR010000311         4020 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_299003, whole genome shotgun sequence.
ACCESSION   DASPKR010000311 DASPKR010000000
VERSION     DASPKR010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4020)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4020
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299003"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(40..1545)
                     /gene="betB"
                     /locus_tag="VD968_08530"
     CDS             complement(40..1545)
                     /gene="betB"
                     /locus_tag="VD968_08530"
                     /EC_number="1.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF009725.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008802 - betaine-aldehyde dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019285 - glycine betaine biosynthetic
                     process from choline [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="betaine-aldehyde dehydrogenase"
                     /protein_id="HYE14470.1"
                     /translation="MSSTQPASETPRKYQLFIDGQWVDAESGKTFTTPNPATGATLAE
                     IAEGDTADIDKAVAAARRAFEGKWSKVSARDRGRMLYKLAQLIEAKTAELARIETSDN
                     GKPIRESQYVDLPQVVENFEYFAGWATKIEGETIPVPGQMFNYTLREPVGVCGQIIPW
                     NFPLLMAAWKLAPALAAGNTVVLKPAEQTPVGAMELAKLIQEAGFPDGVVNIVPGFGE
                     TAGAALASHPDVDKVAFTGSTEVGKLVAKAAADNLKKVSLELGGKAPNIIFADADIEQ
                     AVNGAMMGIFFNQGQVCCAGSRLFVDERVKDEFLDRFKEKSGKIKVGDPLDKTTQMGP
                     QVSEEQLNRIKGYVDIAKEEGASVLAGGCPPQLEGDFQKGYFFQPTIFGEVKNTMRVA
                     QEEIFGPVTSVITFTDEEDLIRQANETIYGLSAGIWTKDITRAHRFAKAVRAGVVWIN
                     TFNMFNAASPFGGYKQSGYGREMGRHALDLYTQIKSVWVDLSGKPIGWFGN"
     gene            complement(1706..2890)
                     /locus_tag="VD968_08535"
     CDS             complement(1706..2890)
                     /locus_tag="VD968_08535"
                     /inference="COORDINATES: protein motif:HMM:NF019500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HYE14471.1"
                     /translation="MRTFLFTTAGVGLLLLVAYDVYATVLHASARYGPIGERLDRLVW
                     RTARSVAFRLSRIRRHKLLNAVGPVLLPLLLATYVFSLIMGFALVYYPHVPELFIYSQ
                     KHEGSAFMDAVYFSGISLTTAGYGDIVPRTSPMRALAVAESATGVALISLTITYLLSV
                     YGALEKKRAVALSFYHQAGEGADAAGYIAHHFVEGRFYGLRDALRTATRDMQGLLESH
                     VEHPVIHYFHPAEVYKSLPRMLFLLLESCAIIHTSLDRDEYAELRNYPEVRTLEANTR
                     HVLSELVASLDLERRARPRDEERPADEKRWARRYRSNLRRLAEAGIKVRGDGAAGLAE
                     YRERRKEWESKLQRLSNHLGYDWDEITGDTDPEYAADEEKEEPGATTLDEERPVGEPS
                     RR"
     gene            complement(2921..>4020)
                     /locus_tag="VD968_08540"
     CDS             complement(2921..>4020)
                     /locus_tag="VD968_08540"
                     /inference="COORDINATES: protein motif:HMM:NF012897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14472.1"
                     /translation="NRNFEARVHQSIKANFLMSPPLVVAFALAGRVNIDLTNEPIGKG
                     RDGEEVYLRDIWPTIGEVGEVLQTATDPETYRRLYANFAEANPLWNEIPSVAGEVYQW
                     DPQSTYIQEPPYFEKFSMQPGVFCDIKGARPLAIFGDSVTTDHISPAGAIKPKSPAGR
                     YLLLRGVGVEDFNSYGSRRGNHQIMVRGTFANVRIKNLMVPGTEGGVTVLQPVGEQMS
                     IYDASVNYQAAGLPLVVIAGQEYGTGSSRDWAAKGTKLLGVRAVIAESFERIHRSNLV
                     GMGVLPLQFKEGTNAQTLGLDGDEIFDIVGLQEGEIVPRQDVTLRVRRGGGEAVEVPV
                     TLRIDTPIEIEYYRHGGILPFVLRQLIAESA"
BASE COUNT          605 a         1331 c         1356 g          728 t
ORIGIN      
        1 tgtcgccgcg cccgtgccgc cgtcttccgc ggccggcgct tagttgccga accagccgat
       61 gggcttgccc gacaggtcaa cccagacgct cttgatctgc gtgtagaggt cgagggcgtg
      121 gcggcccatc tcgcggccgt agccggactg cttgtagccg ccgaagggag aggcggcgtt
      181 gaacatattg aaggtgttaa tccagacgac gcccgcgcgg acggccttcg cgaagcggtg
      241 cgcgcgcgtg atgtccttcg tccagatgcc ggccgacaga ccgtagatgg tctcgttggc
      301 ctggcgtatg aggtcttcct cgtcggtgaa ggttatgacg gaggtgacgg ggccgaatat
      361 ctcctcctgc gccaccctca tcgtgttctt cacctcgccg aagatggtgg gctggaagaa
      421 gtagcccttc tggaagtcgc cttcgagctg cggcgggcag ccgcccgcga gcacggacgc
      481 cccctcctcc ttcgcgatgt caacgtagcc cttgatgcgg ttcaactgct cctccgacac
      541 ctgaggcccc atctgcgtcg tcttgtcgag cgggtcgccg acctttatct tccccgactt
      601 ctccttgaag cggtctagga actcgtcctt caccctctcg tccacgaaga ggcgcgagcc
      661 ggcgcagcag acctgcccct ggttgaagaa gatgcccatc atcgcgccgt tgacggcctg
      721 ctcgatgtcg gcgtcggcga agatgatgtt gggcgccttg ccgcccagct cgagcgagac
      781 cttcttcaga ttgtcggccg cggctttggc gacgagcttt ccgacctcgg tagagccggt
      841 gaaggcgacc ttgtccacgt ccgggtgcga ggcgagcgcc gcgcccgccg tctcgccgaa
      901 gccggggacg atgttgacga cgccgtcggg gaagccggcc tcctgtatga gcttggcgag
      961 ctccatcgcg ccaacggggg tctgctcggc gggcttcagc accaccgtgt tgccggcggc
     1021 gagcgcgggc gcgagcttcc acgcggccat cagcagaggg aagttccagg ggattatctg
     1081 gccgcagacg ccgacgggct cgcgcagcgt gtagttgaac atctgccccg gcaccgggat
     1141 tgtctcgccc tctatcttcg tggcccagcc ggcgaagtat tcgaagttct cgaccacctg
     1201 cggcaggtca acgtactgcg actcgcgtat gggcttgccg ttgtcggagg tctctatccg
     1261 ggcgagctct gccgtcttcg cctcgatgag ctgcgctagc ttgtagagca tgcggccgcg
     1321 gtcgcgcgcg gaaaccttcg accacttgcc ctcgaaggcg cgtcgggcgg ccgcgactgc
     1381 cttgtcaatg tcggccgtgt cgccctctgc gatttcggcg agcgtcgcgc ccgtggccgg
     1441 gttcggggtc gtgaaggtct tgccggactc ggcgtccacc cactgcccgt caatgaagag
     1501 ttggtacttg cggggcgtct ctgacgcggg ttgagttgat gacataaggg attttcctct
     1561 ccagactgaa agtttgattg cctctccaag acttaacgaa gcgggccggt tcgtcggatg
     1621 cgcggcctac tttatcaccc tccgcgcccg gcagtacaga accggggcgg cggcagccgc
     1681 ggtcgtcacg gcggcgctgc cttcttcaac gccgggaggg ctcgccgacg ggccgctcct
     1741 cgtcgagcgt cgtggcgccc ggctcttcct tctcctcgtc ggcggcgtac tcggggtctg
     1801 tgtcgccggt tatctcgtcc cagtcgtagc cgaggtggtt cgacagtcgc tgcaacttag
     1861 actcccactc cttgcgcctc tcgcggtact cggcgagccc cgcggcgccg tcgccccgaa
     1921 cctttatccc ggcctcggcg agcctgcgca aattcgagcg gtagcgccgc gcccagcgct
     1981 tctcgtccgc cggccgctcc tcgtcgcgcg gccgcgcgcg cctctccaaa tcgagcgacg
     2041 cgaccaactc cgagagcacg tggcgcgtgt tcgcctccag cgttcgaacc tccgggtagt
     2101 tgcggagctc cgcgtactcg tcgcggtcga gcgacgtgtg gatgatcgcg cacgactcca
     2161 gcagcaggaa gagcatgcgc gggaggctct tataaacctc ggcggggtgg aagtagtgta
     2221 ttacggggtg ctcgacgtgc gattcgagaa ggccctgcat gtcgcgcgtg gccgtcctga
     2281 gcgcgtcgcg cagcccgtag aagcgcccct cgacgaagtg gtgcgcgatg tagccggccg
     2341 cgtccgcgcc ctcgcccgcc tggtggtaga aggagagcgc cacggcccgc ttcttctcaa
     2401 gcgcgccata gaccgagagc aggtacgtga tcgtgagcga gatgagggcg acgcccgtgg
     2461 ccgactccgc gacggcgagc gcacgcatcg gcgacgtgcg cggcacgatg tcgccatagc
     2521 ccgcggtcgt cagggagatg ccgctgaaat agacggcgtc catgaaggcc gagccctcgt
     2581 gcttctggct gtagatgaaa agctccggca cgtgcgggta atagacgagg gcgaagccca
     2641 ttatgagcga gaagacgtag gtggcgagca gcagcggcag cagcaccggc ccgacggcgt
     2701 tgagcagctt gtgccgccgt atgcgcgaga gcctgaaggc gacggagcgc gccgtgcgcc
     2761 agacgaggcg gtcgaggcgc tcgccgatgg ggccgtagcg cgcgctcgcg tgcagcaccg
     2821 tcgcgtaaac gtcgtaggcg acgaggagca gcagccccac gcccgccgtc gtgaacagga
     2881 aagttctcat cggtgggcgg cccgcgcgcg cgggccgtct tcacgccgat tccgcaatga
     2941 gctgccggag cacgaacggg aggatgccgc cgtgccggta gtactcgatc tctattggcg
     3001 tgtctatgcg gagtgtgacg gggacttcca ccgcctcgcc gccgccccgt cgcacgcgca
     3061 gcgtcacgtc ctgccgcggc acgatctcgc cctcctgtag gccgacgatg tcgaagatct
     3121 cgtcgccgtc gagcccgagc gtctgggcgt tcgtcccctc cttgaactgc aacggcagca
     3181 cgcccatccc gacgaggttc gagcggtgta tgcgctcgaa gctctccgcg atgactgcgc
     3241 gcacgcccaa caacttcgtc cccttcgccg cccagtcgcg cgagctgccc gtgccgtact
     3301 cctggcccgc gatgacgacg agcggcagcc ccgcggcctg gtagttcacg ctggcgtcgt
     3361 agatgctcat ctgctcgccg acgggctgaa ggacggtcac gccgccctcc gtccccggca
     3421 ccatgaggtt cttgatgcgg acgttggcga acgtgccgcg caccatgatc tggtggttgc
     3481 cgcgccgcga gccgtaggag ttgaagtctt ccacgccgac gccgcgcagc agcaggtagc
     3541 ggccggcggg cgacttcggc ttgatggccc cggcgggcga gatgtggtcg gtcgtcaccg
     3601 agtcgccgaa gatggcgagc gggcgcgcgc ccttgatgtc gcagaagacg ccgggctgca
     3661 tgctgaactt ctcgaagtag ggcggctcct gaatgtaagt cgattgcggg tcccactggt
     3721 agacctcgcc cgcgaccgac ggtatctcgt tccagagcgg gttggcctcg gcgaagttgg
     3781 cgtagagacg ccggtacgtc tcggggtcgg tcgcggtctg caagacctcg ccgacctcgc
     3841 cgatggtcgg ccagatgtcg cgcaggtaga cctcctcgcc gtccctgccc ttgccaatcg
     3901 gctcgttggt caggtcgatg ttgacgcggc ccgcgagcgc gaaggcgacc accagcggcg
     3961 gcgacatcag gaagttcgcc ttgatggact ggtgcacgcg cgcctcgaag ttgcggttcc
//
LOCUS       DASPKR010000312         6726 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1852491, whole genome shotgun sequence.
ACCESSION   DASPKR010000312 DASPKR010000000
VERSION     DASPKR010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6726)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6726
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1852491"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1010)
                     /locus_tag="VD968_08545"
     CDS             complement(<1..1010)
                     /locus_tag="VD968_08545"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE14473.1"
                     /translation="MLKIPASPKRRALLLTLALFAALLPPAGLARQAQRPRRVGQPQP
                     APTPSPDSPQQRQKQAAQQGEEVDEGDVVRIETQLVSVPTVVTDRTGKPVSGLRADNF
                     LVFEDGRPQKIANFATADAPFEVALLLDTSGSTRAELGLIRRAALAFIEALRPGDRVS
                     ILGFNTKREGDTSLATVEVKAPLTDDREELQKAVEAIGASNGTPFYDGLGSVARQVFR
                     EQPREELRGRRALVALTDGVDSTSESDFEEARELLKRSGVVAYFVQVNTEDYVEDRLM
                     QDCEDDGALRLSRAQLQRYRRVVAPKAEAADFSNFCQMGPFERMHISRTLYRVAREEM
                     NQL"
     gene            1089..1289
                     /locus_tag="VD968_08550"
     CDS             1089..1289
                     /locus_tag="VD968_08550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14474.1"
                     /translation="MPVIGRLDDQVDEIIIKPVSERRRGEDDETAARPRPTGEELRPP
                     SPSNPSRDETTVRPGELPVWML"
     gene            1420..1494
                     /locus_tag="VD968_08555"
     tRNA            1420..1494
                     /locus_tag="VD968_08555"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1452..1454,aa:Val,seq:tac)
     gene            1532..1608
                     /locus_tag="VD968_08560"
     tRNA            1532..1608
                     /locus_tag="VD968_08560"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1566..1568,aa:Asp,seq:gtc)
     gene            1679..2398
                     /locus_tag="VD968_08565"
     CDS             1679..2398
                     /locus_tag="VD968_08565"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: protein motif:HMM:NF014021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HYE14475.1"
                     /translation="MARLEPFEAARRVFEGRYAGARVLFLAGSVLRGEATPTSDLDVV
                     VVYDRLPRAYREAFVSDGWPVESFVHDPETLERFIELDRQSALPSIISMVLEGVEIPG
                     PSELSAELKRLAREAFEAGPPPLIEDEMTLLRFRLTDWLDDIRHPRSAEELVATGAYL
                     YKDVADFFFRSRNLWTAHSKTVPRRLRQTDPEFAESFRLAFESLFAAKDPAPVIALVE
                     GMLAPFGGLLFEGFRKEAAEK"
     gene            2416..3636
                     /gene="glp"
                     /locus_tag="VD968_08570"
     CDS             2416..3636
                     /gene="glp"
                     /locus_tag="VD968_08570"
                     /inference="COORDINATES: protein motif:HMM:NF045515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990586 - divisome complex [Evidence
                     IEA];
                     GO_function: GO:0061599 - molybdopterin molybdotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gephyrin-like molybdotransferase Glp"
                     /protein_id="HYE14476.1"
                     /translation="MIPVPEAVRIVIEQSEPLPVERVPVEESAGRVLAEDVLADTDLP
                     PFDRAQMDGYAVRSEDLGVVPARLRVVGEAAAGLGWRGQLGEGEAVRIMTGAPLPRGA
                     DSVQQVELTREHDGGRTVEIERATAPGQFYVPRGSEVRAGDRVLEAGEEINAARAAVL
                     ASFGYARVAVRRRPRVAVLATGSELVRVGELPGPDQIRDSNTYSLAAYARLAGAEVER
                     MPFAGDDPELLRRLMAEAAGRSDVLVLSGGVSMGRYDFTKAALSALGAEIFFERVSLR
                     PGKPTVFALLLEGGRRVLAFGLPGNPVSVSVTFNLFARTALRAMQGARAPAMQEETAV
                     LARAVKGSMERASYLPAVLSTDEGGRLVAEPLKWGGSSDFVAFARATALVIVPEGSKS
                     IEAGEVVRVVRLPS"
     gene            3932..5404
                     /locus_tag="VD968_08575"
     CDS             3932..5404
                     /locus_tag="VD968_08575"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE14477.1"
                     /translation="MSREVNHPDLFIEQRDTAASARLFAPRTDWSVMGETEHFVQFYE
                     ADAFLLNSLAEYIGAAIKAGEGAIVVATEAHRDELEARLRDKGLEVTTAVECGQLVLR
                     DAAETLSKFMAGGSPDPALFAEIIGDLIARSSKGRPRVRIYGEMVALLWAEGNYDAAI
                     RLEELWNSLQQTHSFALFCAYPMDGFAGEGAGRGLPHVCTTHSRVIPAESYTALDDSD
                     ERLREITLLQQKAKSLEAEVTERKKAEERLRSALLREQAARLEAEAATRLKDEFLATV
                     SHELRTPLSAILGWSAMLRTSKFDQPAVDRALETIERNARSQAQLIEDVLDVSRIITG
                     QLRLDLRAVEPAAVIEAAVASVRPAAAAKSIQINLLLDSVSPLVCDPARLQQVMWNLL
                     SNAVKFTPVGGCVTISLRRDGTRILIVVSDTGEGVSAEFLPFIFDRFRQADGSTTRRH
                     GGLGLGLAIVRHLVELHGGAVSAESAGVGQGTTFTIELPA"
     gene            complement(5551..5943)
                     /locus_tag="VD968_08580"
     CDS             complement(5551..5943)
                     /locus_tag="VD968_08580"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE14478.1"
                     /translation="MKTILIAEDSDDLRSMLTQFLGANGYRILEAVTGREAIDVAINK
                     RPQLVLMDLGLPGTDGLSAVAEIREHIPVSEMPILMVSAYDGLEYRTEAVSAGCSGYI
                     NKPVDPAALLGTINLLLRHEEGNEGVAA"
     gene            complement(6025..>6726)
                     /locus_tag="VD968_08585"
     CDS             complement(6025..>6726)
                     /locus_tag="VD968_08585"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE14479.1"
                     /translation="SHVEISVSDDGAGIAPEFLPHVFDRFRQADGSTTRRHGGLGLGL
                     AIVRHLVELHGGAVSAESAGEGRGATFRVLLPIIAVYRSVGVEERVHPAAKDTLPSYE
                     CPERLDGLRVLVVDDEPDTRELLKIGLEQCGAAVTTAGSAAEALAAVKSGTPDLLISD
                     IGMPDQDGYDLIDRVRALPATRGGRVPAIALTAYARVEDRMHALRAGYQMHMPKPVEL
                     AELVAVAASLVRRDI"
BASE COUNT         1080 a         2203 c         2240 g         1203 t
ORIGIN      
        1 agctggttca tctcttcgcg cgccactcgg tagagcgtgc ggcttatgtg catgcgctcg
       61 aacggcccca tctggcagaa gttcgagaag tctgcggcct cggccttcgg cgcgacgacg
      121 cggcggtagc gctgcaactg cgcgcgagag aggcgcaggg cgccgtcgtc ctcgcagtcc
      181 tgcatcaggc ggtcttcgac gtagtcctcg gtgttgacct gcacgaagta ggcgacgacg
      241 cccgagcgct tcaaaagctc gcgcgcctcc tcgaagtccg actcgctcgt cgagtcaacg
      301 ccgtccgtca gggcgactaa ggcgcggcgg ccgcgcagct cctcgcgcgg ctgctcgcgg
      361 aagacctgcc gcgcgacgct cccgaggccg tcgtagaagg gcgtgccgtt cgaggcgccg
      421 attgcctcga ccgccttttg cagctcctcc cggtcgtccg taagcggcgc cttcacctcc
      481 acggtggcga ggctcgtgtc gccctcgcgc ttcgtgttga agccgagtat cgagacgcgg
      541 tcgccgggcc gcagagcctc tatgaaggcg agcgccgcgc gccgtatcag gcccagctcg
      601 gcgcgcgtcg agcccgacgt gtcgagcagc agcgccacct cgaagggcgc gtccgccgtc
      661 gcgaagttgg ctatcttctg cggccgcccg tcctcgaaga cgaggaagtt gtctgcgcga
      721 aggccggaga cgggcttgcc cgtcctgtcc gtgacgactg tcgggacgga gacgagctgc
      781 gtctcgattc tcacaacgtc gccctcgtca acctcctcac cctgctgtgc ggcctgcttc
      841 tgccgctgct gcggggagtc gggcgagggc gtcggcgcgg gctgcggctg cccgacgcgc
      901 cgcgggcgct gcgcctgccg ggcgaggccc gcgggcggga gcagggccgc gaacagagcg
      961 agtgtcagga ggagcgcccg acgcttcggg cttgcgggaa tcttcagcac ggtcttaaac
     1021 tctcggtcgg cgaaatccgt ttaaaatata tccgcaaacg tgggccgaac ggaagggggc
     1081 ggcgcgccat gcccgtcata ggcaggctag acgatcaggt tgacgaaatc atcatcaagc
     1141 ccgtctccga aaggcggcgg ggcgaagatg acgagacggc cgcgcgcccg aggccgacgg
     1201 gagaggaact tcggccaccc tctccttcaa acccttcacg tgatgagaca actgtccggc
     1261 ccggcgagtt gcccgtctgg atgctgtgag cgcccggcgc ccttccttta cacgccggcc
     1321 gggggcgccc ggccgagttt tgtgacggcg ccgccgcgct tgacacggga ggcggcttct
     1381 cttaaattgt tatttcggtt gggcgcggca gatattttca ggcacgtacg tcaatggtag
     1441 acggcttccc ttacaaggaa gaggttgggg gttcgagtcc ctccgtgcct accacacgcc
     1501 cgccggtttg aaaacctgag tggcttttcg cggagtcgta gttcagttgg ttagaacgcc
     1561 ggcctgtcac gtcggaggtc gcgggttcga gtcccgtcgg ctccgccact taacgaggga
     1621 gcggttgcct ttaacgaaag gcaaccgctt tttcgttcac ggcccttttt tgatttaaat
     1681 ggcgaggctt gagccttttg aggcggcgcg gagggttttc gaggggaggt acgccggggc
     1741 gcgcgtgctg ttcctggcgg gctcggtgct gcgcggggag gcgacgccga cttccgacct
     1801 cgacgtggtg gtcgtgtacg accggctgcc ccgcgcgtac cgcgaggctt tcgtttccga
     1861 cgggtggccc gtcgaatcgt tcgtccacga ccccgagacg ctcgagcgct tcatcgagct
     1921 agacaggcag agcgcgctgc cgtccatcat cagcatggtc ttagagggcg tcgaaatccc
     1981 cgggccgagc gagctgtcgg ctgagttgaa gcggctagcg cgcgaagcct tcgaggccgg
     2041 gccgccgcct ctcatcgagg acgagatgac gctgctgcga ttccgcctga ccgactggct
     2101 cgacgacata aggcacccgc gctcggcgga agaactggtc gcgacgggcg cctaccttta
     2161 caaggacgtg gccgacttct tcttccgctc gcggaacctc tggacggctc acagcaagac
     2221 cgtcccgcgc cgcctccggc agaccgaccc cgagttcgcc gaaagcttcc gcctcgcctt
     2281 cgagtctctc ttcgccgcca aagaccccgc gcccgtcatc gccttagttg aagggatgct
     2341 cgcgccattc ggcggcctgc tcttcgaggg cttccgcaag gaggccgcgg agaagtgacg
     2401 gactaagccc gcgccatgat ccccgtcccg gaagcagtcc gcatcgtcat agagcagtcc
     2461 gagccgctcc ccgtcgagcg cgttcccgtc gaggagtccg cgggccgcgt gctcgccgag
     2521 gacgttctcg ccgacacaga ccttccgcca ttcgaccgcg cgcagatgga cggctacgcg
     2581 gtgcgctcgg aggatttggg agttgtgccg gcgcggctga gagtcgtggg cgaggcggcg
     2641 gccgggctcg gctggcgcgg ccagctcggc gagggcgagg ccgtgcggat aatgacgggg
     2701 gcgccgctgc cccgcggcgc cgacagcgtg cagcaggtgg agttgacgcg cgagcacgac
     2761 ggcggccgaa cggtcgagat agagcgcgcg acggcgccgg ggcagttcta cgtgccgcgc
     2821 gggagcgagg tgcgcgcagg cgaccgcgtg ctcgaagccg gcgaggagat taacgccgcg
     2881 cgcgcggccg tgctcgcgtc gtttggctat gcgcgcgtgg ccgtgcggag gcggccgcgc
     2941 gtggccgtgc tggcgacggg ctccgagctt gtgcgcgtgg gcgagctacc cggccccgac
     3001 cagatacgcg actcaaacac ctactcgctc gcggcctacg cccgcctagc cggcgccgag
     3061 gtggagcgaa tgccgttcgc gggcgacgac ccggaattgc tgcgccgctt gatggccgag
     3121 gccgccggtc gctcggacgt gctagtgctc tcgggcggcg tctcgatggg ccgatacgac
     3181 ttcacgaagg cggcgctatc cgcgctcggc gcggagattt ttttcgagcg cgtctccctg
     3241 cggcccggca agcctacggt ctttgcgctg ctgctagagg gcggccgtcg cgtgctagcc
     3301 ttcgggcttc ccggcaaccc cgtctccgtc tctgtcacct tcaacctgtt cgcgcgcacg
     3361 gcgttgcgcg cgatgcaggg cgcacgagcc cctgccatgc aagaggagac ggcggtgctc
     3421 gcgcgcgccg tcaagggctc catggagcgc gcgagctacc tgccggccgt gctctcgacc
     3481 gacgagggcg ggcgcctcgt ggccgagccg ctgaagtggg gcggatcgtc agacttcgtc
     3541 gccttcgcac gcgcgaccgc gctcgtcata gtgccggaag gctcgaagtc aatagaagcc
     3601 ggcgaggttg tcagggtagt gcgcctgcct agctgaaatg gtttctgatt aaggaaagag
     3661 ggttgatgag agcgcggctc ccatcaaccc tcggttcatc cgcattttga tgacgatggc
     3721 gcggctatat gtggttcaga aagcccctcc actggctgcc atgtcatctg caagtgacat
     3781 gctccgggct cgccggctgt tatatacgtc gaaggcctgt cagtgttaga atacgtagtt
     3841 ccttttggaa cgccgcatct cccaccttcg tcattctgcg ggtcggggat gctgccagct
     3901 aataatagcg tagccagtca ttggaggccc tttgtcgaga gaagttaatc accccgacct
     3961 ttttatcgag cagagggaca ccgccgcctc cgccaggctc ttcgcgccgc gcacggactg
     4021 gagtgtgatg ggtgagaccg agcacttcgt ccagttctac gaggccgatg ctttcctcct
     4081 gaactcgctc gccgagtaca tcggcgcagc catcaaggcg ggtgagggcg cgatagtcgt
     4141 ggcgaccgag gcgcaccgcg acgagctcga ggcgcgcttg cgggataagg ggctggaagt
     4201 gaccacagcc gtcgagtgcg gccagttggt cttgcgtgac gccgccgaga ccctctcgaa
     4261 attcatggcg ggcggatcac ccgaccccgc gctcttcgcc gaaatcatcg gcgacctcat
     4321 cgcgcgctct tcaaagggtc ggccccgcgt gcgcatttac ggtgagatgg tcgcgctcct
     4381 ctgggccgaa ggcaactacg acgcggcgat ccgccttgag gaactctgga actctttgca
     4441 gcagacgcac tccttcgcac tcttctgcgc ttacccgatg gacgggttcg cgggcgaggg
     4501 ggcggggcgg gggctgcccc atgtttgcac gacgcactcg cgcgtcattc ccgccgagag
     4561 ctatacggcg ctggacgatt ccgacgagcg cctgcgtgaa atcaccctgc tccagcagaa
     4621 ggccaagtcg ctcgaagccg aggtcacgga gcgcaagaaa gccgaagaga gactccgctc
     4681 cgctctgctc agagagcagg cggcgaggct ggaggccgag gccgccaccc gccttaagga
     4741 cgagttcctc gccacagtct cgcacgaact gaggacgccc ctgagcgcca tcctcggatg
     4801 gtcggccatg ctgcgcacga gcaagttcga tcagccggcc gttgaccggg cgcttgagac
     4861 catcgagcgc aacgcgcgct cgcaggcaca gcttatcgag gacgtcctcg acgtttcgcg
     4921 catcatcacg gggcagctcc gcctagacct ccgggcggtc gagcccgccg ccgtgatcga
     4981 ggccgccgtg gcgagcgtcc ggcctgccgc cgctgccaaa agtatccaga taaatttgct
     5041 tttagactct gtgagcccac tcgtttgcga cccggcccgg cttcagcagg tgatgtggaa
     5101 cctgctctcg aacgcggtga agttcacgcc cgtaggcggg tgtgtgacaa tcagcctccg
     5161 gcgcgacggc acccgcatcc tgatcgtcgt cagcgacact ggcgagggcg tgagcgcgga
     5221 attcctacca ttcattttcg accgattccg gcaggcggac ggttcgacga cgcggaggca
     5281 cggggggctg gggctggggc tggcgatagt gcggcacctc gtcgagctgc acggcggggc
     5341 cgtaagcgcc gagagcgcgg gcgtcggaca aggcacgact tttaccatcg agctgccggc
     5401 ttgagagttc acaaacaact gttggcccgc gggacaaaag gcgtaaaatc gctctactcc
     5461 cgtagggtat aggccctgcg aaatgagaga ggccgcagcg caagtaatgc gctgcggcct
     5521 cttctttcat attgcgttta ccggcccgtg ttaagctgcc acgccttcat taccttcttc
     5581 atgtcgtaac aggagattga tcgtcccaag gagtgcggcg ggatccactg gcttgttaat
     5641 gtaaccgctg cacccggcgc tgacagcttc ggtgcggtac tcaagcccgt cgtaggcgga
     5701 gaccatgagg atcggcattt cagacacagg gatgtgttcc ctgatctcgg cgaccgccga
     5761 gagcccgtcc gtccccggaa gccccaggtc catgaggact aactgggggc gtttatttat
     5821 cgccacatca atggcctctc gtcccgtcac ggcttccaaa atccggtagc cgttcgctcc
     5881 gagaaattgc gtgagcatac ttcggaggtc gtcgctgtcc tcggcgatca ggatcgtctt
     5941 caactgaact tcttcgcttc ccaccctgtc atcctgatat tccaaccatc tcggagccgg
     6001 tttgatggca tcgtgcgcgc ggcattaaat gtcgcgccgg acgaggctgg cggcgacggc
     6061 caccagttcc gctagttcga ccggcttcgg catgtgcatc tggtagccgg ccctgagcgc
     6121 atgcatccga tcctcaaccc gcgcgtaggc cgtcagggcg atggccggta cacggccccc
     6181 gcgggtggcg ggcagcgcgc gcacacggtc gattagatca tacccgtcct ggtccggcat
     6241 ccctatgtcg cttatgagca ggtcgggcgt ccccgacttt acggccgcga gcgcctcggc
     6301 cgccgagccg gcggtcgtca ccgccgcgcc gcactgttca aggccgatct tgagtagctc
     6361 gcgcgtgtcc ggctcgtcgt ccacgacgag cacccgcagc ccgtcgagcc tctccgggca
     6421 ttcgtaggag ggcagggtgt cttttgccgc ggggtggacg cgctcctcca cgccgacact
     6481 ccgatagacg gctatgatcg gaagcagcac cctgaaggtc gcgccccgcc cctcgcccgc
     6541 gctctcggcg cttacggccc cgccgtgcag ctcgacgagg tgccgcacta tcgccagccc
     6601 cagccccagc cccccgtgcc tccgcgtcgt cgaaccgtcc gcctgccgga atcggtcgaa
     6661 gacgtggggc aggaactccg gcgcgatgcc ggccccgtcg tcgctgacgg agatttcgac
     6721 gtgcga
//
LOCUS       DASPKR010000313         8374 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_299059, whole genome shotgun sequence.
ACCESSION   DASPKR010000313 DASPKR010000000
VERSION     DASPKR010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8374)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8374
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299059"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            132..320
                     /locus_tag="VD968_08590"
     CDS             132..320
                     /locus_tag="VD968_08590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14480.1"
                     /translation="MLESIREGVIPGARNFERAEGGFPLGSVGPAARAVDVRNALVNS
                     IGFDGHCCALVISRPGLR"
     gene            335..1573
                     /locus_tag="VD968_08595"
     CDS             335..1573
                     /locus_tag="VD968_08595"
                     /inference="COORDINATES: protein motif:HMM:NF012588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14481.1"
                     /translation="MGDSTARTDKEEPLGLVPRLKGQGYAREDVERRRRWVEEKTACR
                     LAHVGSHSIPTEAMRGNVENPVGAAQVPLGVAGPLVVRGEHARGSFYVPLATTEGALV
                     RSYERGMAAIARAGGAEARACLDENRVSPVFAFGTVAEAHDFALGLGEVFESLRAAAE
                     ATTRHGKLLRVEPRAVGREVIVDFCYYTADAQGMNMIARATEAACRWLVGARRARDYL
                     LMTGHCSEKRASAKLFAGGKGKRVVAGALLPARVVKTYLHTTPEGFRDLWRRTVVGHL
                     HAGAVGYNGHYANGLAALFIACGQDAANVVNSSVGVTNFEVTEAGDLYASVTLASLTV
                     ATVGGGTGQGTARECLEMLGCAGAGRAPKFAEIVAATLLAGELSMGAALASGEFVEAH
                     ETYGRNRPEESNQPEESEQT"
     gene            1603..3150
                     /locus_tag="VD968_08600"
     CDS             1603..3150
                     /locus_tag="VD968_08600"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYE14482.1"
                     /translation="MRQPFRGLRGEPRESYDAVVIGAGVGGLVCANMLAKAGLSTLIV
                     EQHYVAGGYCSTFRRRGFTFDAATHFYPLLGNPQTITGRLLAELGVEQEWVKMVPVDR
                     FHFPDGSAFSVPAEFAPYLSKLKREFPGEAASLDRFFAEVREAYLHGLLRYFRGRETG
                     HLEDYEGMSVRDALDRHFRDPKLKLLLAADCGHWGSPPSRTSFVFDSMLRLSYFLGNY
                     YPRGGSQSFADALARKLEERGGHVVLRALARRIIVRDGAARGVEVETGPPHARRRTEV
                     RAGVVVSNADLLLTLERLLGPEHVGAEQLERVRAMRPTLPCFLTHVGLRGVPAEVLED
                     IAGYHWGSWDAERVAESAFKIFVPTLYEPEMAPPGCHTLIVQKLTDVDYERVCDWPAH
                     KREVERYVVENLERVAPGITKKAVVLTSATAETSRRYTLNHRGAMLGWEMSPSQLGAA
                     RPPTEGPVRNLHFVGHWAQPGGGVTPVIVSAARAAASITGRPAREAAAALDAAARAAA
                     QAPAAQS"
     gene            3198..4976
                     /locus_tag="VD968_08605"
     CDS             3198..4976
                     /locus_tag="VD968_08605"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HYE14483.1"
                     /translation="MKPLFVASVAACVASALALHSMRRRDREHARFYETGKSVNAFLG
                     EYRRAVEEGFRRGDPSEVTRFYSGTYSSPGRGRWALRPGGEESGAMVSRLAAEGLGDF
                     GRAELSEEVGRYFASVGSIDNAWCKIDMIEQVDSGRSVTLRVKFILDGTGADGTVFQD
                     RHFYRWRLLNEAPPGGGFDWKIVRDELIEGLRVGGDGRGFVEVEPARSGIDFRHARDP
                     KLDMSLHGGELKFDVMGHAFGGVSATDYDGDDRPDIFFPDGVRSRLYRNAGASGELSF
                     VDSTAAAGLDGVGEASAALFADVDNDGDQDLFVARYLAPNKFFRNRGDGTFADESQAS
                     GLAVSTTSLAACFLDYDSDGFLDLYVGTYGDAFRQIPRLPFFAENAPPNRLFRNEGGR
                     RFREVTAETGTGYTGWTMAVASADFDSDGHADIAVANDMGRKCLYRNRGDGTFEEAAK
                     RAGVLDWSGGMGLAFGDFDSDGWLDLYTSNINSNQRWFGEDPTVSQYVRNVARTRWLV
                     LDAYEYWKFYRLVGPGWRAIGTAVGEGNSLFRNGRDGTFTELKDSHTNRAGWGWGVAF
                     ADFDNDTDLDIYAANGWITNKSKDDL"
     gene            5007..5573
                     /locus_tag="VD968_08610"
     CDS             5007..5573
                     /locus_tag="VD968_08610"
                     /inference="COORDINATES: protein motif:HMM:NF019229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HYE14484.1"
                     /translation="MKKYKRGFFFSREFVGDNSWNGYEHNCLFANAGGGQFVDVARPL
                     GADSVRDARGVGVADFNGDGRLDLVVSNNGEAPTLYMNALKGAGRAVELKLVGSRGNR
                     DAVGAVVRLTAGGKTMTRHVEAGSGYASQSVLAVHFGLGGAERVEVVEIRWPGGLIER
                     VGGEDFGTTSGGRLFARVTEGAAAAAAR"
     gene            5613..7418
                     /locus_tag="VD968_08615"
     CDS             5613..7418
                     /locus_tag="VD968_08615"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HYE14485.1"
                     /translation="MSKRRKRLLIYGVPLVVLLGLGVFVKVKVDRIEAGARRLAELGQ
                     TAQKVLGEYRAGVEKLDAALVAAAFDEDYSNSAEGPLVEELRSERDGVRVYEWRAGGP
                     RPFSKRDAAEQVARYLATISSIEEAKFKLDAVEQIVGPEEMVIRSFLWLRGSRPARAV
                     EVSASEGARTTETEAFETQVLFRMCLRARDGRWKIAWQELIHGTTVTGDRRGFVDVTE
                     AAGLDFVARPNPLWATPEWRPAKTEFVKYGSGGVAAADYDSDGWYDIFFADGERPRLY
                     RNSGGGLFEDATARAGLPEVMIGAHTGILADFDNDGHKDLFVGTTTGPNRIFRNRGDA
                     TFEDVTAGAGLGGEMVTVASAADYDSDGDLDIYVGRYLDPRRSVPTTLFYARNGVGNS
                     LLRNDGGFRFTDVTESAGVREGGLTLGVAWGDYDGDGRPDMYITNDFGRNALLRNRGD
                     GRFADVSHETGTLDFGYGMSSTFADVDNDGDLDIYVSNVHSGQRWYAQAVTLHKYMLN
                     SMRQGTFFEDFPTYREIYRYVGADYRGYGDRMVKGNSLLINDGAGRFKDVAEAARANP
                     FGWYWGSTVFDYDNDGRQDIYAVNGWITSKTTADL"
     gene            7431..8054
                     /locus_tag="VD968_08620"
     CDS             7431..8054
                     /locus_tag="VD968_08620"
                     /inference="COORDINATES: protein motif:HMM:NF019229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HYE14486.1"
                     /translation="MSAVAHIKDYKAGKFFRDEFRGDSSWNGFERNVLLRNEGAADDG
                     TPRFADVAMATGADDIRDGRGMAVADFDNDGDLDIVVNNGVGDSGRAELARAVLLRND
                     VGSRRNWLAVELRGAEGNRDAVGATVTIESGVGRQLRLVTAGSGYASQHSARLYFGLG
                     DETRVPALVVRWPNNRVERFENLEARQLIRITEGGGVQASVLPGAGL"
     gene            8061..>8374
                     /locus_tag="VD968_08625"
     CDS             8061..>8374
                     /locus_tag="VD968_08625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14487.1"
                     /translation="MTERLVVFGADEDRLTRLVAERLRAHAGEPECAVVSRGASAVSH
                     FGGAGAAVYLALARSKDGVALDLDDAERVFRQLASAGARKLVLVTSAAVYGASPHNTG
                     LLT"
BASE COUNT         1321 a         2835 c         2957 g         1261 t
ORIGIN      
        1 tccgaagccc gctgtgtcgc cgggtcgcaa tcgactctgt ttcagcctgg gcggatcaag
       61 ccctagttgt agcgcgcgtt gcgccactgc tcgcgggtca ggcagacctt cttcgtcttc
      121 aggcggtcgc ggtgttggaa agtattcgcg aaggcgtcat ccccggcgcc cgcaacttcg
      181 agcgggcgga gggcggcttc ccgctcggct cggtcggccc cgcggcccgc gccgttgacg
      241 tgcggaacgc cctcgtcaac tcaatcggct tcgacggcca ctgctgcgcg ctcgtcatat
      301 cgcgccccgg cctacggtag agggcgaata tcctatgggc gattcgacag cccgcacgga
      361 caaggaagag cccctcgggc tcgtgccgcg gctcaaaggg cagggctacg cgcgcgagga
      421 cgtggagcgc cgccgccggt gggtcgagga gaagacggcc tgccgcctcg cgcacgtcgg
      481 ctcgcactcg ataccgaccg aggcgatgcg cggcaacgtc gagaaccctg tgggcgcggc
      541 gcaggtgcct ctcggcgtgg ccgggccgct cgtcgtccgc ggcgagcacg cgcgcggcag
      601 tttctacgtg ccgctggcga cgaccgaggg tgcgctcgtg cgctcctacg agcgcgggat
      661 ggcggcgata gcgcgcgcgg gcggcgccga ggcgcgcgct tgtctcgacg agaaccgcgt
      721 ctcgcccgtc ttcgccttcg gcaccgtggc cgaagcccac gacttcgcgc tcgggctggg
      781 cgaagtcttc gagtcgctcc gcgccgcggc cgaggccacg acccgtcacg gcaaactgct
      841 cagggtcgag ccgcgagccg tcgggcgcga agtgattgtt gacttctgct actacacggc
      901 cgacgcgcaa ggcatgaaca tgatcgcgcg cgcgaccgag gccgcctgcc gctggctcgt
      961 cggcgcgcgc cgcgcgcgcg actacctgct catgaccggc cactgctcgg agaagcgcgc
     1021 ctccgcgaag ctcttcgcgg gcggcaaggg caagcgcgtc gtggccggcg cgctgctgcc
     1081 cgcgcgcgtg gtcaagactt acctgcacac gacgcccgag ggctttcgag acctctggcg
     1141 gcgaacggtc gtcggccacc tgcacgcggg agccgtgggc tacaacggcc actacgcgaa
     1201 cgggctggcc gccctcttca tcgcctgcgg gcaggacgcg gcgaacgtcg tcaactcttc
     1261 ggtcggcgtc acgaactttg aagtcactga ggcgggcgac ctctacgcga gcgtgacgct
     1321 cgcctcgctc acggtcgcga ccgtcggcgg cgggacgggg cagggcactg cgcgcgagtg
     1381 cctagagatg ctcggctgcg cgggcgcggg gcgcgcgccg aagttcgccg agatagtcgc
     1441 cgccaccctc ctggccggcg agctctcgat gggcgcagcg ctcgccagcg gcgagttcgt
     1501 cgaggcccac gagacctacg gccgcaacag gccggaggaa agcaatcagc cggaagagag
     1561 tgagcagaca tagctgactg ccgaccgccg accgctaatg aaatgagaca gcctttcagg
     1621 ggtttgcgcg gcgagccgcg tgagtcttac gacgccgtcg tcatcggcgc gggcgtcggg
     1681 gggctcgtgt gcgcgaacat gctggcgaag gcggggctga gcactttgat agtcgagcag
     1741 cactacgtgg cgggcggcta ttgcagcacc ttccgccgtc gcgggttcac cttcgacgcc
     1801 gcgacacact tctacccgct cctgggcaac ccgcagacga taacgggccg gctgctcgcg
     1861 gagctgggcg tcgagcagga gtgggtgaag atggtgccgg ttgaccgctt ccacttcccc
     1921 gacggctcgg ccttctccgt ccccgcggag ttcgcgccct acctctcgaa gctcaagcgt
     1981 gagttccccg gcgaggccgc ctccctcgac cgcttcttcg ccgaggtgcg cgaggcgtac
     2041 ctgcacggac tgctgcgcta cttccgcggg cgcgagaccg gccacctcga agattacgaa
     2101 ggcatgagcg tccgcgacgc gctagaccgg cacttccgcg acccgaagct gaaacttttg
     2161 ctcgccgcag attgcggcca ctggggctcg ccgccatcgc gcacctcgtt cgtattcgac
     2221 tcgatgctgc gcctctccta cttcctcggc aactactacc cgcgaggcgg ctcgcaatct
     2281 ttcgcagacg ccctggcccg taagctagag gagaggggcg gccacgtcgt gctgcgcgcg
     2341 ctcgcacggc gcataatcgt ccgagacggc gccgcgcgcg gcgtcgaggt cgagacaggc
     2401 ccgccgcacg cgcggcgcag gacggaggtg cgcgcgggcg tcgtcgtctc taacgccgac
     2461 ctacttttga cgctcgaacg cctcctcggc cccgagcacg tcggcgcgga acagctcgaa
     2521 cgcgtgcgcg ccatgcggcc gacgctcccg tgcttcctca cgcacgtcgg cttgcgcggc
     2581 gtgccggcgg aagtgctgga agatatcgcc ggctaccact ggggttcgtg ggacgccgag
     2641 cgcgtcgccg agagcgcctt caagattttc gtgccgacgc tgtacgagcc cgagatggcg
     2701 ccgcccggct gtcacaccct catcgtgcag aagctgaccg acgttgacta cgaacgggtc
     2761 tgcgactggc cggcgcacaa gcgcgaggtc gagcgctacg tcgtcgagaa cttggagcgc
     2821 gttgcgccgg gcattacgaa gaaggccgtc gtgttgacga gcgcgacggc cgagacttcg
     2881 cggcgctaca cgctcaacca ccgcggcgcg atgctggggt gggagatgtc gccctcgcag
     2941 ctcggcgccg cgaggccccc gacggaaggg ccggtcagga atctgcactt cgtcggccac
     3001 tgggcgcagc ccggcggcgg cgtcacgccc gtcatcgtct cggcggcgcg cgcggccgcg
     3061 agcatcacgg gccgcccggc tagagaggcc gcagccgccc tcgacgcggc cgcgcgcgcg
     3121 gcggcgcaag cccccgccgc ccagagttga cggcggcgtt cggaggaaga ttgaggagga
     3181 gctttttcag aagggcgttg aagcccctgt tcgtcgcgag cgtcgcggcg tgcgtcgcct
     3241 ccgcgctcgc gctccactcg atgcggcggc gcgaccgaga gcacgcgcgc ttctacgaga
     3301 cgggcaagtc tgtcaacgcc ttcctcggcg agtacaggcg cgccgtcgag gagggcttcc
     3361 gccgcggcga cccgtccgaa gtcacgcgct tctactcggg gacttattcc tctccggggc
     3421 gcggccgttg ggcgctgcgg cccggcggcg aagagtcggg cgcgatggtc tcgcgcctcg
     3481 cggccgaggg gctcggcgac ttcggccggg cagagcttag tgaagaggtc gggcgctact
     3541 tcgcctccgt cggctcgata gataacgcct ggtgcaagat tgacatgatc gagcaggtag
     3601 attcggggcg gagcgtcacg ctgcgcgtca agttcatcct cgacggcacg ggcgccgacg
     3661 gcacggtctt ccaggacagg cacttctacc gctggcggct cttgaacgaa gccccgccgg
     3721 gcggaggctt cgactggaag atagtgcgcg acgagctcat cgaggggctg cgcgtcggcg
     3781 gcgacgggcg cggcttcgtt gaggtcgagc ccgcgcgctc cgggattgac ttccgccacg
     3841 cgcgtgaccc gaagctcgac atgagcctgc acggcggcga gcttaagttc gacgtgatgg
     3901 gccacgcttt tggcggggtg agcgccaccg actacgacgg cgacgaccgc cccgacatct
     3961 tcttccccga cggcgtgcgc tcgcgcctct acaggaacgc gggcgcgtcg ggcgaactct
     4021 cgttcgttga ctcgacggcc gccgccgggc tcgacggcgt gggcgaggcg agcgccgccc
     4081 tcttcgccga cgttgacaac gacggcgacc aagacctctt cgtcgcgcgc tacctcgcgc
     4141 ccaacaagtt cttccgcaac cggggcgacg gcacgttcgc ggacgagtcg caggcgtccg
     4201 gcctcgccgt ctctacgacg agcctcgcgg cctgcttcct cgattacgac tcggacggct
     4261 tcctcgacct atacgtcggc acctacggcg acgccttccg ccaaatcccg cgcctacctt
     4321 tcttcgccga gaacgccccg cccaaccgac tcttccgcaa cgagggcggg cggcggttcc
     4381 gcgaagtgac cgccgagacg gggacgggct acacgggctg gacgatggcg gtcgcctcgg
     4441 ccgacttcga ctcggacggg cacgccgaca tagccgtcgc gaacgacatg ggccgcaagt
     4501 gcctctaccg aaaccgcggc gacggcacgt tcgaggaggc ggcgaagcgg gcgggcgtgc
     4561 tcgactggag cggcggcatg gggctcgcct tcggcgactt cgactcggac gggtggctcg
     4621 acctctacac gtcgaacatc aactctaacc agcgctggtt cggcgaagac ccgaccgtct
     4681 cgcagtacgt ccggaacgtc gcccgcacgc gctggctcgt gctcgacgcc tacgagtact
     4741 ggaagtttta ccgcctggtc ggccccggct ggcgcgcgat agggacggcc gtgggcgagg
     4801 gcaactcgct cttccgaaac ggccgcgacg ggacgttcac cgagctgaag gacagccaca
     4861 cgaaccgcgc cggctggggc tggggcgtgg ccttcgcaga cttcgacaac gacacagacc
     4921 tcgacatcta cgccgccaac ggctggataa cgaacaagag caaggacgac ctttgactgc
     4981 ccttcacctc gggcgcggtc gcgcacataa agaagtacaa gcgcgggttc ttcttcagcc
     5041 gggagttcgt cggcgacaac tcctggaacg gctacgagca caactgcctg ttcgccaacg
     5101 cgggcggagg gcagttcgtg gacgttgcgc gcccgctggg cgcggactcc gtcagggacg
     5161 cgcgcggggt gggcgtcgcg gactttaacg gcgacggccg gctcgacctc gtcgtctcca
     5221 acaacggcga ggcgccgacc ctctacatga acgcgctgaa gggcgcgggc cgcgcggtcg
     5281 agttgaagct cgtcgggtcg cgcggcaacc gcgacgccgt gggcgccgta gttcggctga
     5341 ccgcgggcgg gaagacgatg acgcgccacg tcgaggccgg ctcgggctac gcctcgcagt
     5401 ccgtgctcgc cgtgcacttc gggctcgggg gcgccgaaag ggtagaggtg gtcgaaatcc
     5461 gctggccggg cgggctcatc gagcgcgtcg ggggcgaaga cttcggcacg acctcgggcg
     5521 ggcggctgtt cgcgcgggtc acggagggcg ccgccgcggc ggccgcccgt tagctacgac
     5581 ggccgcgccg tcgtgaagtt cggagaccaa taatgtcgaa gagacgaaaa cggttgttaa
     5641 tctacggcgt gccgctcgtc gtgctgctcg ggctcggcgt cttcgtgaag gtcaaagttg
     5701 accggattga ggccggcgcc cgccggctcg ccgagttggg gcagaccgcg cagaaggttc
     5761 tgggcgagta ccgcgcgggc gtcgagaagc tggacgccgc gctcgtcgcc gccgccttcg
     5821 acgaagacta ctcgaacagc gccgaagggc cactcgtcga ggagcttcgg tcggagcgcg
     5881 acggcgtgcg cgtctatgag tggagggccg gggggccgcg cccgttctcg aagcgcgacg
     5941 cggccgagca ggtcgcgcgt tatcttgcga ccatcagctc aatcgaggag gcgaagttca
     6001 agctcgacgc cgtcgagcag atagtcggcc ccgaagagat ggtcatacgc tccttcctat
     6061 ggctgcgagg gtcgcgcccg gcgcgggccg tcgaagtcag cgcgagcgag ggcgcccgga
     6121 ctacggagac ggaggccttc gagacgcagg tgctcttccg catgtgcctg cgcgcgcgcg
     6181 atggccgatg gaagatagcc tggcaggagc ttatccacgg cacgaccgtc acgggagaca
     6241 ggcgtgggtt cgttgacgtg acggaggctg ccggcctcga cttcgtcgcg cgcccgaacc
     6301 cactgtgggc gacgcccgag tggcggcccg cgaagacgga gttcgtcaag tacggctcgg
     6361 gcggggtcgc cgcggccgac tacgactcgg acggctggta cgacatcttc ttcgcagacg
     6421 gcgagcgccc gcggctctac cgaaacagcg gcggcggcct gttcgaggac gcgaccgccc
     6481 gcgcgggcct ccccgaagtc atgatcggcg cgcacacggg gatactcgcc gacttcgaca
     6541 acgacggcca caaagatctc ttcgtcggca ccacgaccgg ccccaaccgc atcttccgca
     6601 accgcggcga cgcgaccttc gaggacgtga ccgcgggagc gggcctcggc ggcgagatgg
     6661 tgacggtcgc ctcggcggcc gactacgact cggacggcga cctcgacatc tacgtcggcc
     6721 gctacctcga cccgcgccgc agcgtcccga ccacgctctt ctacgcgcgc aacggagtgg
     6781 gcaactcgct cctgcgcaac gacggcgggt tccgcttcac ggacgtgacc gagagcgcag
     6841 gcgtgcgcga agggggcctc acgctcggcg tcgcgtgggg cgactacgac ggggacggcc
     6901 gccccgacat gtacatcacg aacgacttcg gccggaatgc ccttttgcgt aatcgcggcg
     6961 acggccggtt cgccgacgtg tcgcacgaaa cggggacgct ggatttcggc tacggcatga
     7021 gctcgacctt cgccgacgtt gacaacgacg gcgacctcga catctacgtc tcgaacgtgc
     7081 actcgggcca gcgctggtac gcgcaggccg tcacgctcca caagtacatg ctcaacagca
     7141 tgaggcaggg gacgttcttc gaggacttcc cgacctaccg cgagatttac aggtacgtgg
     7201 gggccgacta ccgcggctac ggcgaccgca tggtgaaggg caactctctg ctcatcaacg
     7261 acggcgcggg ccgttttaaa gacgtggccg aggccgcgcg cgcaaacccc ttcggatggt
     7321 actggggctc gaccgtcttc gactacgaca acgacggccg gcaggacatc tacgccgtca
     7381 acggctggat aacgtcgaag acgacggcag acctttgact gccctatatc ttgagcgcgg
     7441 tcgcgcacat caaagactac aaggcgggca agttcttccg cgacgagttc cgcggcgact
     7501 cctcctggaa cggcttcgag cgcaacgtgc tgctaaggaa cgagggggcg gccgacgacg
     7561 gcacgccgcg cttcgcggac gtggcgatgg ctacgggcgc ggacgacata cgcgacgggc
     7621 gcggcatggc cgtggccgat ttcgacaacg acggcgacct tgacatcgtc gtcaacaacg
     7681 gcgtgggcga ctcgggccgc gccgagcttg cgcgcgccgt cctgctccgc aacgacgtgg
     7741 gctcgcggcg caactggctg gccgttgagc ttcgcggcgc ggagggtaac cgcgacgccg
     7801 tcggcgcgac cgtgacgata gagagcgggg tgggcaggca gctcaggctc gtcacggcag
     7861 gctcgggcta cgcctcgcag cacagcgcgc gcctgtactt cgggctcggc gacgagacgc
     7921 gcgtcccggc gctcgtggtg cgctggccta acaaccgcgt cgagcgtttc gagaacttgg
     7981 aggcccggca actgatacgc ataaccgagg ggggcggcgt gcaggcttcg gtgctgccgg
     8041 gcgccgggtt gtagagtttg atgacggaga ggctggtcgt cttcggggct gatgaagacc
     8101 ggctcacgcg gctcgtggcc gagcggctgc gcgctcacgc gggcgagccg gagtgcgccg
     8161 tcgtctcgcg tggggcgagc gccgtgtcac acttcggcgg cgcgggcgcg gccgtctatc
     8221 tcgcgctcgc gcgctcgaag gacggcgtcg ccctagacct cgacgacgcc gagcgcgtct
     8281 ttcgtcaact ggcgtcagca ggtgcgcgaa agctcgtgct cgtaacgagc gccgccgtgt
     8341 acggcgcgag cccgcacaac actgggctgc tgac
//
LOCUS       DASPKR010000314         2348 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1076331, whole genome shotgun sequence.
ACCESSION   DASPKR010000314 DASPKR010000000
VERSION     DASPKR010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1076331"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(251..2092)
                     /locus_tag="VD968_08630"
     CDS             complement(251..2092)
                     /locus_tag="VD968_08630"
                     /inference="COORDINATES: protein motif:HMM:NF012688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase"
                     /protein_id="HYE14488.1"
                     /translation="MEEINYWLVTDPADVAPAVEQLSHHPALGFDCETTALDPFEGRL
                     RLVQLASPAGTYLFDLDRLAPSGDAARAEALEPLRRLLASPKPVKVAHNAKFDAKWVR
                     HRLGVELCGDFDSRVNVNGGETVERGGLFDTLLASQIISAGEQEDRHGLAVVVERYLG
                     QEMDKTMQVSDWGGELSAAQLEYAARDAAVMLPLRDKLIQQLRANSLGRCAQLEFECV
                     VPLAALELAGIYLDQPSWRELLAGIKKGRDELHEVLQDALAEEPAQQSLFGPVRADIN
                     LDSHVQLTKALKRFIPGERLPDSTRNWKLEPLAAEFPVVGQILEYRTLQKTLKFGETL
                     LEAIKPTTGRIHSNFHQIGAPTGRMSSTDPNVQQIPHGAEFRRCFRAPAGRKLVTADF
                     SQIELRILADFTGDRGFVDAFNSGADLHRVTAAQIFNVSLEDVTKQQRDFAKRLNFGV
                     VYGIGARRFALMTGLTETEAEDLLRRYFATYRDLDAWLRDAALKAVRDRTAPRTVAGR
                     LFRFNFDPEDKQAASLAQRNGKNSPIQGSSADIIKRALRLLHDRLKGTGASVVNVVHD
                     EIVVEAAGADADDVAKTVEKAMCAAGEEYVRKVPVKVEYVVADEWSK"
BASE COUNT          345 a          737 c          829 g          437 t
ORIGIN      
        1 ccggctaccc cttcgtcccg gccgtctata tcatcctcgc cacgctcctc gtcctcgacc
       61 tcgtctatct cgcccgcctc acctccggca taggcttcct catcgtctta acgggcctgc
      121 ccgtctattt cgcatggagc aagagcagaa ggcagaaggc agaagggcag tagggaaatc
      181 ctctagttcg tgcgctccga atttgaagcc ggagcgcgcg aagtaaagct taccgccttc
      241 tgccttctgt ttacttcgac cattcgtcgg cgacgacgta ctcgaccttg acgggaacct
      301 ttcggacgta ctcctcgccc gcggcgcaca tggccttctc cacggtcttc gccacgtcat
      361 cggcgtcggc cccggccgcc tcgaccacta tctcgtcgtg gacgacgttg acgacgctcg
      421 cgcccgtccc cttcaggcgg tcgtgcagca gccgtagcgc gcgcttgatg atgtcggcgc
      481 tgctcccctg gatgggcgag ttcttgccgt tgcgctgggc gagggaggcg gcctgtttgt
      541 cttcggggtc gaagttgaag cggaagaggc ggcccgcgac ggtgcgcggc gccgttcggt
      601 cgcggacggc tttgagcgcg gcgtcgcgga gccaggcgtc gaggtcgcgg taggtggcga
      661 agtagcggcg cagcaggtct tcggcctccg tctccgtcag gcccgtcatc agggcgaagc
      721 ggcgcgcgcc gatgccatag acgacgccga agttgaggcg cttggcgaag tcgcgctgct
      781 gcttggtcac gtcctcgagc gagacgttga atatctgcgc ggcggtgacg cggtggaggt
      841 ccgcgccgga gttgaaggcg tcaacgaagc cccggtcgcc tgtgaagtcc gcgagtatgc
      901 gcagctctat ctggctgaag tcggccgtta cgagcttgcg ccccgcgggc gcgcggaaac
      961 agcggcggaa ctccgcgccg tgcggtatct gctgcacgtt cgggtcggtc gagctcatcc
     1021 gcccggtcgg cgcgcctatc tggtggaagt tcgagtgtat gcggcccgtc gtcggcttga
     1081 ttgcttcgag cagcgtctcg ccgaacttca gggtcttttg cagcgtgcgg tattcgagta
     1141 tctggccgac gacggggaac tccgcggcga gcggctcgag cttccagttg cgcgtcgagt
     1201 cgggcaggcg ctctccgggg atgaagcgct tgagggcctt ggtcaactga acgtgcgagt
     1261 cgaggtttat gtcggcgcgc acggggccga agagagactg ctgcgcgggc tcttcggcca
     1321 gagcgtcctg aaggacttcg tgcagctcgt cgcgcccctt cttgatgcct gccagaagct
     1381 cgcgccagct cggctggtcg aggtagatgc cggctagctc aagcgccgcg agtgggacga
     1441 cgcactcgaa ctcaagctgc gcgcagcgcc cgagcgagtt cgcgcgcagt tgttgaatca
     1501 acttgtcgcg caaggggagc atgacggcgg cgtcgcgggc ggcgtactct aactgcgcgg
     1561 ccgacagttc gccgccccag tcgctcacct gcatcgtctt gtccatctcc tggccgaggt
     1621 agcgctcgac gacgacggcg aggccgtggc ggtcttcctg ctcgcccgcc gagattatct
     1681 ggctggcgag gagcgtgtcg aataggccgc cgcgctcgac cgtctcgccg ccgttgacgt
     1741 tcacgcgcga gtcgaagtcg ccgcacagct cgacgccgag ccggtggcgc acccacttgg
     1801 cgtcgaactt ggcgttgtgc gcgaccttga cgggcttcgg ggaggcgagc aggcggcgca
     1861 gcggctccag cgcctcggcg cgcgcggcgt cgccggaggg ggcgaggcgg tccaggtcga
     1921 agaggtacgt gcctgcgggc gaggcgagct gcacgaggcg caggcgcccc tcgaaggggt
     1981 cgagcgcggt ggtctcgcag tcgaatccga gcgccgggtg gtgcgaaagc tgctcgacgg
     2041 ccggggccac gtccgcgggg tctgtgacga gccagtaatt gatctcttcc atctattaag
     2101 ccgtgaatta gggcgacggg gaaaattggc gcggcgcagc cgatggcggc gccgagataa
     2161 gctacccgaa aaaagggatt atgtcattcg gcggggcggg cgcgtggggt cggcaggcgg
     2221 aagcctcgcg ggcgccgggt tcatgacgga atggctgtca tgaacctctc acccgcgagg
     2281 cttccgcccg cggctctgtt acggggcggc ctgctgctgc gcgtacttct gttgcagttg
     2341 ctgctgct
//
LOCUS       DASPKR010000315         6327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_171640, whole genome shotgun sequence.
ACCESSION   DASPKR010000315 DASPKR010000000
VERSION     DASPKR010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6327)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6327
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171640"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..999
                     /locus_tag="VD968_08635"
     CDS             <1..999
                     /locus_tag="VD968_08635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14489.1"
                     /translation="VGPAPGGLVLAPDGSLDLERSFVRVNYFSLLGDASVRNNVQRGV
                     ENRPVDFVAVRLPAESLGGAARGGEDLRADEAVWLYGGRDRQALILAREDATGRTRIK
                     YLPVANLRQDGRGRVTFDRPQWAAGFPLKIWEDSRLELPAGASREEWLAGWHTDEEWL
                     LATHRTAYSNAVVGLHEQMARHRTEATDPGAPGLGDDERLIRRFRRRQRELVENDLLI
                     LANDHWNFDVRGFNPGGNHGSFFRASTHSVLMFAGGEATGIPRGLSVERPYDSLCLVP
                     TLLALTGQIEDGARPVPVLWRRGFRDFPGRPVRELFDAPREMQPPVAGSAAKESAP"
     gene            996..3263
                     /locus_tag="VD968_08640"
     CDS             996..3263
                     /locus_tag="VD968_08640"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE14490.1"
                     /translation="MSGQAGGGSPGAATRAWPADDVEPQDLLDAEIHISVGTDGDGEQ
                     GRKRRGRGLYLHGAAFALGAALLIFVVRHVGVGHIYDALREVGLGFFFLLGIIGLRHA
                     LRAHSMRIAVPREHRRFSFLRAFTTRLAGETISFFTFTGPVLGEATKAALLKKRVPLA
                     AGVQALVVDNLLYNLSVAIFITSGACLMLATYDLPSGARYPLVVIAVGMLLATVATVA
                     AVISSMMPLSAVVDFLIRVGVKRRALSAKRARVREIESNVYDFYKERPGAFFQMFACD
                     FLSHATTVAEVYVVLAMLGFEPSARVSYIIDSLTKVINLVFGFVPATIGVYEGGTGFI
                     LHTLGYAAAAGVTLGIVRKAGLIVWAVIGLLMLVRHTAPGAARKILGRNPRLREAMDN
                     LVLSNMTHRPARTFVSVLGVAVGVLLVVFTVGLAHGVLRERGRREGETGAEIMMRASG
                     SVGMSGTQRFSYPVSRADEIGQVEGVRVAVPVGQKTDASDTGFGMRVIDGIPFESYAR
                     LAGMKVIEGRGLQSGDEAIVDSTWKEQRKVNVGDSVKLYGTDFRIVGIYEPPGGSRIK
                     IPLSTMQGIAGAEPDFCSSVLVSVSNPAEQEAVAARIHERFPDDQLIFTRDLPELYTA
                     SIPALNVFVSVVVGVSAVISTLVILLAMYTTVTERTKQIGIMKALGMSNAGIAWVVEQ
                     EALFVSVLGVILGLLLTLGARALVMSVTSLTVDIEPRWLVISLAIGLAGGTLGALYPA
                     LRAARQDAVDALSYE"
     gene            3286..3552
                     /locus_tag="VD968_08645"
     CDS             3286..3552
                     /locus_tag="VD968_08645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14491.1"
                     /translation="MSEQRGAGAEALEELRRSNSEAFSILGTELAEVKAMLMALLDLQ
                     KSVIMTTGMSERDVERHVQTLLDGYRERFLSALSDRVQDAADRA"
     gene            complement(3565..5160)
                     /locus_tag="VD968_08650"
     CDS             complement(3565..5160)
                     /locus_tag="VD968_08650"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HYE14492.1"
                     /translation="MIRKITEELRRHIYGARDVEAGRADEVFAGTFDACVVGSGPGGS
                     VAAATLAEAGMKVLLVERGPYIPAKDFNFRVLDMSSRNGHVETTSGFRALLYQGNVLG
                     GSSIIYGGVGMKPDDFIFNEWSERSGTAAVTRESLEPHYRHVAEMMSLTPQTKALENA
                     SNRIVREMASALGRPEGLVMLSRYTEGCAGVGLCNFGCGLDMKGTMANSFIPAGLATG
                     NLTVLTECEASAVAGGKGAGGFRASGVEVAVKEHSTGRVVRRATVSARRVVVAGGAFF
                     SSGVLLRSRGLPGRERVGRKVYLQPHAQIFAMFDEPVTRRGSLSGKQYLPFNGVPAIY
                     NFTGYLREHGFWWLASILFPANLASFVSNLPPAEHYEIMRRFHHTTSITITLKDDPAR
                     SRVVLKDGKPQLDFRESERDIESLRTCFLTAARGFLAVGARRVFLPLLRPPKIEREAD
                     LKQLERLKFAYDDLLLYSDHTSGGNPFGADEARGVTDEAGRVFGTENLYVADSSLFPT
                     APGVNPSWTIMAMSRRVAKGMAG"
     gene            complement(5157..5606)
                     /locus_tag="VD968_08655"
     CDS             complement(5157..5606)
                     /locus_tag="VD968_08655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14493.1"
                     /translation="MEGLEAVAREVESAERHLSRRGFLFSLAFAAVALPRLTLDRKDK
                     EFINRVAATLIPAEALRQTGIDVLANVEHMLAQGSADHRRKVLRLLAWSRRVAFLYGG
                     DRVALGARGSRFEVMQKMGKALSSLCLVAFWGDERALSLIDSHGGRA"
     gene            complement(5628..6302)
                     /locus_tag="VD968_08660"
     CDS             complement(5628..6302)
                     /locus_tag="VD968_08660"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HYE14494.1"
                     /translation="MKSTSIAFGPISRATLHYNASQGRVRPGDLILMDVGAEFMHYTA
                     DVTRTFPASGKFTKEQAEIYEVVLAAQEAGMRTIRPGGSLADMQAASVEVIKDGLLRL
                     GLITDRDSNQYRAWLFHGTGHWLGMNVHDVGGAEKFEPGMVFTNEPGIYVRADALDNL
                     PRTPEMEKFRQAVRPAFEKYKNIGVRIEDDVLVTPDSHRNLSAALPRTIREIESFITR
                     ARREVR"
BASE COUNT          964 a         2196 c         2124 g         1043 t
ORIGIN      
        1 gtcggccccg cgcccggcgg gctggtgctc gcgcccgacg gctctctcga cctcgagcgc
       61 agcttcgtcc gcgtcaacta cttctccctg ctcggcgacg cctccgttcg caacaacgtg
      121 cagcgcggcg tcgagaaccg ccccgttgac ttcgtggccg tgaggctgcc cgccgagagc
      181 ctgggaggcg ccgcgcgggg cggcgaagac ctgcgcgccg acgaggccgt gtggctctac
      241 ggcgggcgcg atcgccaagc gctcatactc gcgcgcgaag acgcgacggg ccgcacgcgc
      301 atcaagtacc tgcccgtcgc gaacctccgt caggacgggc gcgggcgcgt caccttcgac
      361 cgtcctcagt gggccgcggg cttcccgctg aaaatctggg aggactcgcg gctcgaactg
      421 ccggcgggcg cgtcgcgcga ggagtggctc gcgggctggc acacggacga ggagtggctg
      481 ctcgccacgc accgcacggc ctactcgaac gccgtcgtcg gcctgcacga gcagatggcc
      541 cgccaccgga ctgaggcgac cgacccgggc gcgcccggcc tcggcgatga cgagcggctg
      601 atacgacgat tccggcgccg ccagcgcgag ctggtcgaga acgacctgct catcctcgcc
      661 aacgaccact ggaacttcga cgtgcgcggc ttcaaccccg gcggcaacca cggctcgttc
      721 ttccgcgcct cgacccactc agtgctcatg ttcgccggcg gcgaggcgac cggcataccg
      781 cgcggcctct cggtcgagcg cccctacgac agcctctgtc tggtgcctac gctgctcgcg
      841 ctcaccggcc aaatcgagga cggcgcgcgc cccgtcccgg tcctctggcg gcgcggcttc
      901 cgcgacttcc ccggccgtcc cgtgcgcgag ctgttcgacg cgccgcgcga gatgcagccg
      961 cccgtcgctg gctctgccgc taaggagagc gcgccttgag cgggcaggcc ggcggaggga
     1021 gccccggcgc ggcgacccgg gcgtggcccg cggacgacgt ggagccgcaa gacctcctcg
     1081 acgccgagat acacatctcc gtcggcacag acggcgacgg cgagcagggc cgcaagcgcc
     1141 gcggccgcgg cctgtacctg cacggcgcgg ccttcgctct gggtgccgcc ctgctcatct
     1201 tcgtcgtccg ccacgtcggc gtcggccaca tctacgacgc gctgcgcgag gtcggcctcg
     1261 gcttcttttt cctcctgggc atcatcggcc tgcgccacgc tctgcgcgcc cactcgatgc
     1321 gcatcgccgt cccgcgcgag cacagacgct tcagcttcct ccgcgccttc accactcgcc
     1381 tcgcgggcga gaccataagc ttcttcacct tcaccggccc cgtgctcggc gaggcgacga
     1441 aggcggcgct gctgaaaaaa cgggtgccgc tcgcggccgg cgtgcaggcg ctcgtcgttg
     1501 acaacctgct ctacaacctc tcggtcgcca tcttcataac gagcggcgcg tgcctgatgc
     1561 tcgccaccta cgaccttccg agcggcgcgc gctaccccct ggtcgtcatc gcggtcggca
     1621 tgctgctcgc cacggtcgct acggtcgcag ccgtcataag cagcatgatg ccgctctcgg
     1681 cggtcgttga cttcctaata agggtaggcg tcaagcggcg cgcgctctcg gcgaagcgcg
     1741 cgcgcgtgcg cgagatagag tcgaacgtct atgacttcta caaggagcgc cccggcgcct
     1801 tcttccagat gtttgcgtgc gacttcctgt cgcacgcgac gaccgtggcg gaagtttacg
     1861 tcgtgctggc gatgctcggc tttgagcctt cggcgcgcgt gtcgtacatt attgactcgc
     1921 tgacgaaggt cataaacctg gtgttcgggt tcgtccccgc gaccataggc gtttatgagg
     1981 gcggcaccgg cttcatactg cacacgcttg gctacgcggc ggccgcgggc gtaacgctcg
     2041 gcatagtgcg aaaggcgggc ctgatagtct gggccgtcat agggcttttg atgctcgtgc
     2101 gccacacggc gccgggcgcc gctcgcaaaa tcctcgggcg caacccgcgc ctgcgtgaag
     2161 ctatggacaa ccttgttctc tctaacatga cccaccggcc ggcccgcacc ttcgtgagcg
     2221 tgctgggcgt cgcggtcggc gtgctcctcg tggtcttcac cgtcggcctg gcgcacggcg
     2281 tcctgcgcga gcgcggcagg cgcgagggcg agacgggcgc ggagattatg atgcgcgctt
     2341 cgggttccgt cggcatgagc gggacgcagc gcttctccta ccccgtctcg cgcgccgacg
     2401 agatagggca ggtcgagggc gtgcgcgtcg ccgtccccgt cgggcagaag accgacgcct
     2461 cagacacggg cttcggcatg cgcgtcattg acggcatccc cttcgagagc tacgcgcgcc
     2521 tcgccggcat gaaggtgatc gaggggcgcg ggctccagtc gggcgacgag gcgatagttg
     2581 actcgacttg gaaggagcag cggaaggtta acgtcggcga ctccgtcaag ctctacggca
     2641 cagacttccg catcgtaggc atatacgagc cgccgggcgg ctcacgcatc aaaatcccgc
     2701 tctcgacgat gcagggcatc gccggcgccg agcccgactt ctgctcgtcc gtgctcgtct
     2761 ccgtcagcaa ccccgcggag caggaggctg tcgccgcccg gattcacgag cgcttccccg
     2821 acgaccagct tatcttcacg cgcgacctgc cagagcttta cacggcgagc atcccggccc
     2881 tcaacgtctt cgttagcgtc gtcgtcggcg tctcggccgt catcagcacg ctcgtcatcc
     2941 tcctcgcaat gtacacgacc gtcacggagc ggacgaagca gatagggata atgaaggcgc
     3001 tggggatgtc gaacgcaggc atcgcgtggg tcgtcgagca ggaggcgctc ttcgtgagcg
     3061 tcctcggcgt catactgggc ctcttgctga cgctcggcgc gcgggcgctc gtgatgagcg
     3121 tcacgtcgct gacggttgac atagagccgc gctggctcgt catctcgctc gcaatcggcc
     3181 tcgcgggcgg cacgctcggc gcgctctacc cagccctccg cgccgcccgc caggacgcgg
     3241 tagatgcgct cagctacgag taagcttgac tgtgtaaggg gaaccatgag cgaacagagg
     3301 ggcgcaggcg ctgaggcgct ggaggagttg aggcggtcga actcggaggc tttctcgatt
     3361 ctcgggactg agttggccga ggtgaaggcg atgctgatgg cgctgctcga ccttcagaag
     3421 tccgtcatca tgacgaccgg catgagcgag cgggacgtag agcgccacgt ccagacgctc
     3481 ctcgacggct accgcgagcg ctttctctcc gcgctttccg accgcgtgca ggacgccgcc
     3541 gacagagcgt aggcccgccg ccgcctaacc tgccatcccc ttcgcgacgc ggcgcgacat
     3601 ggccattatc gtccaggagg ggttgacgcc gggcgcggtc gggaagaggc tcgagtcggc
     3661 gacgtagagg ttctcggtgc cgaagacgcg gcccgcctcg tccgtgacgc cgcgcgcctc
     3721 gtccgcgccg aacgggttgc cgccgctcgt gtggtcggag tagagcagca ggtcgtcgta
     3781 ggcgaacttc agtctctcca actgcttcaa atcggcctct cgctcgatct tcggcggccg
     3841 gagcagcggc aggaagacgc gccgcgcgcc gacggcgagg aagccgcggg cggccgtcag
     3901 gaaacacgtg cgaaggctct ctatgtcgcg ctcgctctcg cggaagtcga gctgcggctt
     3961 gccgtctttg agcacgacgc gggagcgcgc cgggtcgtcc ttgagcgtga tggtgatgct
     4021 cgtcgtgtgg tggaagcggc gcatgatctc gtagtgctcg gccggcggca ggttcgagac
     4081 gaaggaggcg aggttggccg ggaagagtat gctggcgagc caccagaagc cgtgctcgcg
     4141 caggtagccg gtgaagttgt agatggccgg cacgccgttg aagggcaggt actgtttgcc
     4201 gctcaggctc ccgcgcctcg tcacaggctc gtcgaacatg gcgaagattt gcgcgtgcgg
     4261 ctgcaaatag actttgcggc cgacgcgctc acggcccgga agcccgcgac tccgaagcag
     4321 aacccccgac gagaagaacg ccccgcccgc gacgacgacg cgacgggcgc tcacggtcgc
     4381 gcggcgcacg acgcgccccg tcgaatgctc tttgacggct acctcgacgc ccgaagccct
     4441 gaagccgcca gcccccttcc cgcccgcgac cgcagaagcc tcgcactcgg tcagcaccgt
     4501 tagatttccg gtcgcgaggc cggcggggat gaagctgttc gccatcgtcc ccttcatgtc
     4561 cagcccgcag ccgaagttgc atagccccac gccagcgcag ccttccgtgt agcggctgag
     4621 catcacgagc ccctccggcc tgcccagcgc cgacgccatc tcgcggacga tgcggttgct
     4681 cgcgttctcc agagccttcg tctgcggcgt gagcgacatc atctcggcga cgtgccggta
     4741 gtgcggctcg agcgactcgc gcgtgacggc ggcggtgccg ctgcgctcgc tccactcgtt
     4801 gaagatgaag tcgtcgggct tcatgccgac gccgccgtag atgatgctgc tgccgccgag
     4861 cacgttcccc tggtagagca gcgcgcggaa gcccgaggtc gtctcgacgt ggccgttgcg
     4921 gctagacatg tcgagcacgc ggaagttgaa atccttcgcg gggatgtacg gcccgcgctc
     4981 gaccagcagg actttcatcc ccgcctcggc gagtgtcgcc gccgccacag acccgcccgg
     5041 ccccgagccg acgacgcacg cgtcgaacgt cccggcgaag acctcgtcgg cgcggcccgc
     5101 ctccacgtcg cgcgcgccgt agatgtgccg gcgcaactct tccgtgatct tccttatcac
     5161 gcgcgccctc cgtgcgagtc tatgagcgag agggcgcgct cgtcgcccca gaaggccacg
     5221 aggcagagcg aggagagcgc cttgcccatc ttctgcatca cctcgaagcg agagccgcgc
     5281 gctccgagcg ccacgcggtc gccgccgtag aggaacgcga cccgtcgcga ccacgccagg
     5341 aggcgcagga ctttgcggcg gtggtcggcg ctcccctgcg cgagcatgtg ctcgacgttc
     5401 gcgagcacgt caatgccggt ctggcgtagc gcctcggccg ggatgagcgt cgccgccacg
     5461 cggttgatga actctttgtc tttacggtcg agcgtgaggc gcggcagcgc gacggccgcg
     5521 aaggcgagcg agaagaggaa gccccgccgg ctcaggtgtc gctcggcgga ttcgacttcg
     5581 cgcgctacgg cttcgagccc ttccatacgg cagaccgaaa agtgaagtca gcgcacctcc
     5641 cggcgggcgc gcgtgatgaa gctctcaatc tcacgaatcg tccgcgggag agcggcagag
     5701 aggttgcggt ggctgtctgg tgtgacgagc acgtcgtcct cgatgcggac gccgatgttc
     5761 ttgtacttct cgaaggcggg ccgcacggcc tgcctgaact tctccatctc gggcgtccgc
     5821 ggcagattgt cgagcgcgtc ggcgcgaacg tagatgccag gctcgttcgt gaagaccatg
     5881 cccggctcaa atttctcggc cccgcccacg tcgtggacgt tcatcccgag ccagtggccc
     5941 gtgccgtgga agagccacgc tcggtactgg ttcgagtccc ggtcggtgat gaggccgagc
     6001 cgcagaaggc cgtccttgat gacctcgacc gaggccgcct gcatgtcggc gaggctcccg
     6061 cccgggcgta tcgtcctcat gcctgcttcc tgggccgcca gcaccacttc gtaaatctcc
     6121 gcctgctcct tcgtgaactt ccccgacgcc gggaaggtgc gcgtgacgtc cgccgtgtag
     6181 tgcatgaact cggcgcccac gtccatgaga atcaggtcgc cggggcggac gcgcccctgc
     6241 gaggcgttgt agtggagcgt cgcgcgcgag atcgggccga aggcgatgct cgtgctcttc
     6301 agcgcagagc cgcggctcta cacgaac
//
LOCUS       DASPKR010000316         3323 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_947334, whole genome shotgun sequence.
ACCESSION   DASPKR010000316 DASPKR010000000
VERSION     DASPKR010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3323)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3323
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_947334"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..1192
                     /locus_tag="VD968_08665"
     CDS             161..1192
                     /locus_tag="VD968_08665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14495.1"
                     /translation="MNKSLPSGRAFVRACVCACALAAVCAATCELGAGAFVGAPRPRA
                     KARQGERLDIRLRSLTTRATGRLVVEPSESGGRALLTALGLPDPQTLASTARTYVVWA
                     LSGGRIVRLGELVRDERGNGGLAFDRPGGFERYGVIVTAEPSADVERPGDPVLTTRTD
                     EAAALYPAKTGDDAAAGDAARATKATTGPAPRPPDPAPPASRTRRAGVAGDFYTEVDD
                     ALASRGGGRLIELDGSSAAPGASGAARATLLTGRAYVRVNFRGLPLPDAVGANVYVMW
                     AVTPEGRIAYMGSLPVTEAINTAEIYVRAAGFEADDYTLHVTAERQRPVPAPSGRLML
                     APKSATIVK"
     gene            1324..2730
                     /locus_tag="VD968_08670"
     CDS             1324..2730
                     /locus_tag="VD968_08670"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE14496.1"
                     /translation="MAKRGSVLVVDDEEIMRDVLETLLSAEGYRVDLARTGEEGLEAY
                     GRRAYDVVLLDVSMPGMGGLRALEELLKLDQEAVVIMITAYATFDTAIGAWERGAFNC
                     VRKPFQNEQILATVAAGIRRRRKDEERQTLRRALSRSVDRGSIIGRSEKMHTIFQLVE
                     QVAPARSTVLITGESGTGKELIARAIHMHSTRASKPFVTVNSSNIPSELLESELFGHT
                     RGAFTGAVAAKKGLFEVADGGSLFLDEIGDIPPETQARLLRVLQEREFTPLGDTAPRK
                     VDVRIVAATNIDLKEAVRQGTFREDLYYRLAVVPIELPPLRERREDILPLAQHFIRKY
                     NEENARSVSEQLAPDVLALLEEYSWPGNVRELENVIERAVVIAPGPEVTRQCLPAEIA
                     DPQKAMSAAPLSAAAGALDISHGVNFYDEVRRFEIDLIRRALDQTGGHQSRAARLLGM
                     NATTLNSKIKTYNIQLRS"
     gene            2741..>3323
                     /locus_tag="VD968_08675"
     CDS             2741..>3323
                     /locus_tag="VD968_08675"
                     /inference="COORDINATES: protein motif:HMM:NF013132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HYE14497.1"
                     /translation="MARGAEPVEQLSDAEARFERVRGTVGMVLAPAVFVVLLLLPLAG
                     LKPEAQRLAAVMAAVVVLWVTEALPLPVTALLGAAACVVLRVAPARDVFAPFADPLMF
                     LFIGSFILARAIFLHRLDRRLAFGVLSVRWVGARPARILFAFGAVTAFISAWISNTAT
                     TAMMFAIGMAILAFLFEQEGGGGRVSRRYATALM"
BASE COUNT          508 a         1201 c         1085 g          529 t
ORIGIN      
        1 tttcgtctgc cgcgcccgca agcggccggc gtgacgtgag cctttgagcg cataattccc
       61 cggcccccgc ccgcgaacaa aacccttgct tttatccctc ccggtgataa tctcacagcg
      121 ctttggctcc tgagacttac gggaacgggt tctctccttt atgaacaaga gtcttccttc
      181 gggcagagcc ttcgtgcgtg cctgcgtgtg cgcgtgcgcg ctggcggccg tatgcgccgc
      241 gacgtgcgag ctcggggccg gcgcgttcgt gggagcgccg cgcccgcgcg cgaaggcgcg
      301 gcagggcgag cggctcgaca taaggctgcg ctcgctaacg acgcgcgcga cgggcaggct
      361 cgtcgtcgag ccgagcgagt cgggcgggcg cgcgctcttg acggcgctcg gcctgccaga
      421 cccgcagacg ctcgcgagca ccgcgcgcac atacgtcgtc tgggctctga gcggcgggcg
      481 catcgtccgg ctcggggagc ttgtgcgcga cgagcgcggc aacggcgggc tcgccttcga
      541 ccggcccggc ggcttcgagc gctacggcgt aatcgtcacg gccgagccct cggccgacgt
      601 tgagcggccc ggcgacccgg tgctcacgac ccgcaccgac gaggccgcgg ccctctaccc
      661 ggctaagacc ggcgacgacg ccgcagcggg cgacgccgcc cgcgccacga aggccacgac
      721 aggcccggcc ccgcgcccgc ccgaccccgc gcctcccgcc tcgcgcacgc gacgcgccgg
      781 agtcgcgggc gacttctaca cggaggttga cgacgcgctc gcgtccagag ggggcggccg
      841 cctcatcgag ctcgacggaa gctcggccgc gccgggcgcc agcggcgctg cgcgcgccac
      901 gctcctcacg ggccgcgcct acgtccgcgt caacttccgc ggcctgccgc tgcccgacgc
      961 cgtcggcgcg aacgtctatg tgatgtgggc cgtcacgccc gaggggcgca tcgcctacat
     1021 ggggagcctg cccgtcaccg aggccataaa caccgcggag atttacgtcc gcgccgcagg
     1081 cttcgaggct gacgactaca ccctgcacgt cacggccgag cggcagcggc ccgtccccgc
     1141 cccctcgggc cggctaatgc tcgcgcccaa gtcggccacc atcgtcaagt gagcgcgttc
     1201 gccgccgcgg ccccgcccgg tataaaataa gtgtggaatg cgaagtgcag agtgatgaat
     1261 tgaggcggcc cgcctcaatt catcactctg cacttcgcac tcatcacttt ttcagaggtc
     1321 tgaatggcta agaggggctc agtcctcgtc gttgacgacg aggagataat gcgcgacgtt
     1381 ctcgagacgc tgctgtcggc ggaaggctac cgcgttgacc tcgcaaggac gggcgaggag
     1441 ggcctggagg cttacggtcg ccgcgcctac gacgtggttc tgctcgacgt ttcgatgccg
     1501 ggcatgggcg gccttcgcgc gctcgaagag ctcctgaagc tcgaccagga ggccgtcgtc
     1561 ataatgataa cggcctacgc caccttcgac acggccatcg gcgcctggga gcgcggcgcc
     1621 ttcaactgcg tccggaagcc cttccagaac gagcagattc tcgccaccgt cgccgcgggc
     1681 atacgccgcc gccgcaagga cgaggagcgg cagacgctca ggcgcgctct ctcgcgcagc
     1741 gttgaccgcg gctccatcat cggccgctcc gagaagatgc acaccatctt ccagctcgtc
     1801 gagcaggtcg cgcctgcccg ctcgactgtg ctcatcaccg gcgagtccgg gacggggaag
     1861 gagctgatag ctcgcgcgat tcacatgcac agcacgcgcg cctccaagcc cttcgtcacc
     1921 gtcaactctt ctaacatccc ctctgagctt ctggagtctg agctgttcgg ccacacgcgc
     1981 ggcgccttca ccggcgccgt cgccgccaag aaggggctct tcgaggtggc agacggcggc
     2041 tctctcttcc tcgacgagat aggcgacatc ccgcccgaga cgcaggcgcg cctgctgcgc
     2101 gtgctacagg agcgcgagtt cacccccttg ggcgacacgg cgccgcgcaa ggttgacgtg
     2161 cgcatcgtcg ccgcgacgaa tattgacctc aaggaggccg tccgacaggg gactttccgc
     2221 gaagacctct actaccggct cgccgtcgtc cccatcgagc tccccccctt gcgcgagcgc
     2281 cgcgaggaca tactcccgct cgcccagcac ttcatacgca agtacaacga ggagaacgcg
     2341 cgctccgtct ccgagcagct cgcgcccgac gtgctcgcgc tcctggagga atattcgtgg
     2401 cccggcaacg tgagggaact tgagaacgtc atcgagcgcg cagtcgtcat agcgcccggc
     2461 cccgaggtca cgcgccagtg cctcccggcc gagatcgccg acccgcagaa ggccatgagc
     2521 gccgcccccc tctcggccgc ggccggcgct ctggacataa gtcacggcgt caacttctac
     2581 gacgaggttc gccgcttcga gatagacctc atacgccgcg ccctcgacca gacgggcggc
     2641 caccagtccc gagccgcccg cctcctcggc atgaacgcca ccaccctcaa ctccaagatc
     2701 aagacctaca acatccagct tcgctcctga gacccgacgc atggcgagag gggcagagcc
     2761 cgtcgaacaa ctgagcgacg ccgaggcgcg cttcgagcgc gtgcgcggca ctgtggggat
     2821 ggtgcttgcg ccggccgtct tcgtcgtgct gcttcttctg ccgctcgcgg gattgaagcc
     2881 ggaggcgcag aggctcgcgg ccgtgatggc ggcggtcgtg gtgctttggg tgacggaggc
     2941 gctgccgctg ccggtgacgg ccctgctcgg ggctgcggcg tgcgtcgtgc tgagggtcgc
     3001 gccggcgcgc gacgtgttcg cgcccttcgc agaccctctg atgttcctct tcatcggctc
     3061 cttcatactt gcgcgcgcga tattcctgca ccggctcgac cggcggctcg ccttcggcgt
     3121 gctctccgtg cgctgggtgg gcgctcgccc ggcgcgcata ctcttcgcat tcggcgccgt
     3181 gacggccttc atctcggcct ggatttccaa cacggcgacg accgccatga tgttcgcaat
     3241 agggatggcg atactcgcgt tcctcttcga acaggagggc ggcggcgggc gagtcagtcg
     3301 gcgctacgcc acggcgctga tgt
//
LOCUS       DASPKR010000317         6240 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_817828, whole genome shotgun sequence.
ACCESSION   DASPKR010000317 DASPKR010000000
VERSION     DASPKR010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6240)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6240)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6240
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_817828"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1670
                     /locus_tag="VD968_08680"
     CDS             <1..1670
                     /locus_tag="VD968_08680"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HYE14498.1"
                     /translation="RTNGGPAPAAEAAPAEGGDVDTEAAGPQIQEKRGRRGAAVKAAA
                     ASPSPHEHGATAARAKPLTPGVSLDEACRSAVRMLVEEQSVESLALMLRADDNFYPAC
                     VTGAFESRPPRVALKPKEIKLLLAATKGDSIPVPAAGRTSSKHEEAVELFPLIVGDEI
                     KGALLVAAASLTGEQRRALAAFCREIAMPLEVARLREELERRTRAASHSQAFTEVLNT
                     ALPEEAYSTILRHSTDLLRAERGSLLLYDERAGELAVMAAVGPRADVARESRVRLGEG
                     VAGTVLREGRPVVVRDVSALAGWEPAPAERSYKTGSFISYPILVGGRRVGVINVTDKA
                     GGGSYDEEDLGLLDLIAPQMALAIDRAEWHQKATQFQLLSITDPLTNLVNRRYLEERL
                     QEELERSKRHRFAMSFLMVDIDDFKAYNDRHGHQAGDLALEMTAQCLKTALRSADVAA
                     RYGGEEFSILLPQTGLSEARVIADRIRRRIERTHFPHGKAQPLGAVTVSIGISAFGPD
                     LDTPASIIFAADQALYAAKSRGKNTVEAYAPHGGKKPASPAEGAEEG"
     gene            1679..3949
                     /locus_tag="VD968_08685"
     CDS             1679..3949
                     /locus_tag="VD968_08685"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE14499.1"
                     /translation="MPPKSQKPRRVLARTPPDMFVGRGELVRDLSALAAAKAGAARSV
                     ALLAAPRSGASELLRQVFDEQFRQRGGAAPVYFAFTQTDHATTAAARRFLHTFLTHTI
                     AHRRDDPTLVNASPTLRALLDLAAPSDFEWVERLVDSFERAAGEGDERALVRLCLSAP
                     QQAAARGARTLVLLDDVHLAERLRGEVALGPEVALAAVQSGAPFVLAGLRRRLLDVLN
                     GPASQPGLDGLQKIHLGDLHDDDARALAESLARRHEVPLSEETRDLLVQQLGASPYLI
                     TALVESARDRGASLTGFREFQTLYVDELMGGRIHRRLNAVLEEVVPAPAPRRGLLRVL
                     HESAASPGGKTPAEVWLRRLGVDAFEFERMMRLLHAHELASFHATYVEATPSVVWRDF
                     LAVGYRLHVAVEPRALVVADTLVEALKRAPLTMARHYRRGAALNLGRLMRRFDFQQVP
                     ASLLHYDRFARVYRGVPAEEVAAGLDAESDLVRLPQVVTAASAASFHPPVLQFCDEER
                     CSVAHGFDSATYADANEIVWIAAEIESKLEAGRALVELWLDRLAQVGEACGFARVRLW
                     LVSPEGFSAEASELLNEREAYGSSRQMLELLSERLGSAPEGGEAGGAGNEFAVEIPMG
                     EDTELIAAHTAEQIARRMEFEPEAINQIKTALVEACINAAEHSFSPERKIYNRFRVED
                     DKLVITVSSRGLSLPQSITDNGASLIENNGREAVESPRGRRGWGLKLIRALMDDVEFE
                     RVDDGTRLRMTKYLRK"
     gene            3967..4359
                     /locus_tag="VD968_08690"
     CDS             3967..4359
                     /locus_tag="VD968_08690"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HYE14500.1"
                     /translation="MTEPPSPMPPTASAPRADGAVAIVYAGDYVNKATGQRIEHECLL
                     KLESGCRALVINFRGTELVNSIGVSILLGVIDVAERRGTPVVFSDLSRHTVKLFDLLG
                     LTRLVALAESEEAALATLSEFAPSPNGH"
     gene            4411..5676
                     /locus_tag="VD968_08695"
     CDS             4411..5676
                     /locus_tag="VD968_08695"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HYE14501.1"
                     /translation="MPDRMRKVLHAFAALADLGEELAGTSDFAEMVRSALHVVLGALG
                     VRRGAVAEFERETQSLRFVAARGFGESAPPELSLAPRAASGARSNGNGRRHGLAHGHE
                     VAHFEKAVREAVAGAGVEVVTPLVVRDEPVGVILLGGKARGEPFGAEDLELVRSLGRH
                     IGVGLHNHRLLREVERRAEENRRLYEELKTIYRDTVRAFAAAIDCKDKYTQGHSERVG
                     KYSEIIAREMGWDEEQVEGIAVAGYLHDIGKLVVDRDIINAPYRIDAKKSSELNRHPA
                     AGYEILKPISHPFADIPLLAKYHHERPDGRGYPEGLKGDEIPAGARIVSLADSFDAMT
                     TDRPYRRRRSFDEVIADFRRNAGRQFDPPVVAAFCRALLKELKGETRPRAILRLLGKG
                     YVDEQTATAPLESLISDLETGTFMAAGQS"
     gene            complement(5692..>6240)
                     /locus_tag="VD968_08700"
     CDS             complement(5692..>6240)
                     /locus_tag="VD968_08700"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HYE14502.1"
                     /translation="LSGQTQLATKSFAVELRVDGTLNKGEFRVQPVWETAEAGGHTMV
                     TARPAELGQAVEGDSGTGSLEGAENEVTKVSIRPVELYSVEVWKDGVRKSVVPVAKPE
                     ITVGRGSKSVSVDLPIKGDPEVSRLHATLERDEQGRYWFTPKGRNPTFVSGREIAREE
                     RVQVQPDEKIDIASFTLRIQPK"
BASE COUNT          981 a         2232 c         2091 g          936 t
ORIGIN      
        1 cgcggacgaa cggaggcccc gcgcccgccg ccgaggccgc cccggcggaa ggcggggacg
       61 tggacactga ggcggcaggg ccgcagattc aggagaagcg agggcgccgc ggcgctgccg
      121 tgaaggcggc ggcggcctcg ccaagcccgc acgagcacgg ggcgaccgcc gcgcgcgcga
      181 agccgctcac gccgggcgtc tctctcgacg aggcgtgtcg cagcgccgtc cgcatgctcg
      241 tcgaggagca gagcgtcgag tcgctcgcgc tcatgctcag agcagatgac aacttctacc
      301 ctgcctgcgt caccggcgcc ttcgagtcgc gcccgccgcg cgtcgcgctc aagcccaaag
      361 agataaagct tctgctcgcc gcaacgaagg gcgactcgat acccgtcccc gccgcgggcc
      421 gcacctcctc gaagcacgag gaggcggtcg agcttttccc cctgatagtc ggcgacgaga
      481 taaaaggcgc gctgctcgtc gcggccgcga gcctgaccgg cgagcagcgc cgcgcgctcg
      541 ccgccttctg ccgtgagata gcgatgccgc tcgaagtcgc gcggctgcgc gaggagcttg
      601 agcgccgcac gcgcgccgcc tcgcactcgc aggccttcac cgaagtcctg aacacggcgc
      661 tgcccgaaga ggcttactcg acaatcctgc gacactcgac cgacctgctg cgcgccgagc
      721 gcggctcgct cctgctctac gacgagcgcg cgggcgagct cgccgtcatg gcggccgtcg
      781 gcccgcgcgc ggacgttgcg cgcgagtcgc gcgtgcgttt gggcgagggc gtcgccggca
      841 ccgtgctgcg cgagggccgt cccgtcgtcg tgcgcgacgt gtccgcgctc gccggctggg
      901 agcctgcgcc cgccgagcgc agctacaaga cgggctcgtt cataagctac cccatcctcg
      961 tcggcggccg ccgcgtcggc gtcatcaatg tcacggacaa ggccggcggg ggctcatacg
     1021 acgaggaaga cctcgggctc ctcgacctca tcgcgccgca gatggctttg gcgattgacc
     1081 gcgccgagtg gcaccagaag gccacgcagt tccaactgct ctcgataaca gacccgctga
     1141 cgaacctcgt caaccgccgc tacctcgaag agcgcttgca ggaggagcta gagcgctcga
     1201 agcgccaccg cttcgcgatg agcttcctga tggtggacat tgacgacttc aaggcctaca
     1261 acgaccggca cggccaccag gccggcgacc tcgcgctcga gatgaccgct cagtgcctca
     1321 agaccgcttt gcgctcggcc gacgtggccg cgcgctacgg cggcgaggag ttcagcatac
     1381 tgctgccgca gacggggctc tcggaggcgc gcgtcatcgc cgaccgcata cgccgccgca
     1441 tcgagcgcac gcacttcccg cacggaaagg ctcagccgct cggggccgtc accgtcagca
     1501 tcggcatttc ggccttcggc cccgacctcg acacgccggc cagcatcatc ttcgcggccg
     1561 accaggccct ctacgctgct aagagccgcg gcaagaacac cgtcgaggct tacgcgccgc
     1621 acggcggcaa aaagcccgcc tcgcccgccg aaggcgcgga ggagggctga agacggggat
     1681 gccgccgaag tcgcagaagc cgaggcgcgt gctcgcccga accccgcccg atatgttcgt
     1741 cgggcgaggc gagctcgtgc gcgacctctc ggcgctcgcg gccgcgaagg ccggcgcggc
     1801 tcgctccgtc gccctgctcg ccgcgccgcg ctccggcgct tccgagcttc taagacaagt
     1861 cttcgacgag cagttccgac agcgcggcgg ggccgcgccc gtctatttcg ccttcacgca
     1921 gaccgatcac gcgacgacgg cagcggcccg gcgcttcctg cacaccttcc taacgcacac
     1981 gatagcgcac cgccgcgacg acccgacctt agtcaacgcc tccccgacgc ttcgcgcgct
     2041 ccttgacctc gcggcacctt cggacttcga gtgggtcgag cgccttgttg actccttcga
     2101 gcgcgccgcg ggcgagggcg acgagagggc gctcgtgcgc ctgtgcctga gcgcgccgca
     2161 gcaggcagcc gcgcgcgggg cgcgcacgct cgtgctgctc gacgacgttc acttggccga
     2221 gcgcctgcgc ggcgaggttg cgctcgggcc ggaggtcgcg ctggcggccg tgcagtcggg
     2281 ggcgcccttc gtgctcgcgg gcctgcggcg ccggctcctc gacgtgctca acggcccggc
     2341 ctcgcagccc ggcctcgacg gccttcagaa gattcacctc ggcgacctgc acgacgacga
     2401 cgcccgcgcg ctcgccgagt cgctcgcgcg ccgccacgaa gtcccgctct cggaagagac
     2461 gcgcgacctg ctcgtccaac agctcggcgc gagcccttac ctcatcacgg ccctcgtcga
     2521 gtcggcgcgc gaccgcggcg cctcgctcac gggcttccgc gagttccaga ccctctacgt
     2581 tgacgagctg atgggcgggc gcatacaccg ccgcctgaac gccgtgctgg aggaggtcgt
     2641 gccggccccc gcgccgcgcc gcgggctgct gcgcgtgctg cacgagtcgg ccgcgagccc
     2701 cggcggtaag acgcccgccg aggtctggct gaggaggctg ggggttgacg ccttcgagtt
     2761 cgagcgcatg atgcggctgc tgcacgcgca cgagctggcg agcttccacg ccacttacgt
     2821 agaggccacg ccttcggtcg tctggcgcga cttcctcgcc gtcggctacc gcctgcacgt
     2881 cgccgtcgag ccgcgcgcgc tcgtcgtcgc cgacacgctc gtcgaggccc tgaagcgcgc
     2941 gccgctcacg atggcgcggc attaccgccg cggggcggcg ctcaacctcg gccgcctcat
     3001 gcggcgcttc gacttccagc aggtgcctgc gagcctgctg cactacgacc gcttcgcgcg
     3061 cgtctatcgc ggcgtcccgg ccgaggaggt cgccgcgggg ctcgacgccg agtcagacct
     3121 cgtgcgcctg ccgcaggtcg tgacggcggc gagcgccgcc tccttccacc cgccggtgct
     3181 acagttctgc gacgaggagc gctgctcggt cgcccacggc ttcgactcgg ccacttacgc
     3241 cgacgctaac gaaatcgtct ggatagcggc agagattgag tcgaagctcg aagccggccg
     3301 cgccctcgtc gagctctggc tcgaccgcct cgcgcaggtc ggtgaggctt gcggcttcgc
     3361 ccgcgtgcgg ctctggctcg tctcgccgga gggtttttcc gccgaggctt ccgagcttct
     3421 caacgagcgc gaagcctacg gctcgagccg gcagatgctc gagcttctct cagagcgtct
     3481 cgggagcgcg cccgagggcg gggaggcggg cggcgccggc aacgagttcg ccgtcgaaat
     3541 ccccatgggc gaggacacgg agctgattgc cgcgcacacg gccgagcaga tagcgcgccg
     3601 gatggagttc gagcccgagg ccataaacca gataaagacg gcactcgtcg aggcgtgcat
     3661 aaacgccgcg gagcacagct tcagccccga gcgaaaaatt tataatcgtt ttcgggtgga
     3721 agatgataaa ttagtcatca ccgtttcgag ccgggggctc tccctccccc aaagcattac
     3781 cgacaatggg gcatcgctga tagagaacaa cggccgcgag gccgtcgaga gcccgcgcgg
     3841 gcgccgcggc tgggggctca agctgatacg ggccctgatg gacgacgtgg agttcgagcg
     3901 cgttgacgac ggcactcgcc tgcgcatgac caagtatctc cgcaagtaga agggacacct
     3961 gcccacatga cggaaccacc ttcccccatg ccgccgacgg cctctgcccc gcgggccgac
     4021 ggcgcggtcg ctatcgttta cgcgggcgac tacgtgaata aggccacggg gcagcgcatc
     4081 gagcacgagt gccttctcaa gctcgagtcg ggctgccgcg cgctcgtcat caacttccgg
     4141 gggacggagc tggtcaacag catcggcgtc tccatcctgc tcggcgtcat tgacgttgcc
     4201 gagcggcgcg gcacgcctgt cgtcttctca gacctgagcc ggcacacggt caagctcttc
     4261 gacctgctcg gcctgacgcg cctcgttgcg ctcgccgaga gcgaggaggc ggcgctagcc
     4321 acgctatctg agttcgcccc gtcgcccaac gggcattaat agagcagtca gcaggttcgc
     4381 ccccccgacc gcggttacta cgacaagccg atgcctgaca ggatgcgaaa ggttctgcac
     4441 gccttcgcgg cgctcgccga cctgggcgag gagcttgcgg ggacgagcga cttcgcggag
     4501 atggtgcgct ctgcgctgca cgtcgtcctc ggcgctttag gcgtcaggcg cggcgccgtc
     4561 gccgagttcg agcgcgagac tcagtccctc cgcttcgtcg ccgcgcgcgg cttcggcgag
     4621 agcgccccgc cggagctgag cctcgcgccc cgcgcggcct cgggcgccag gtcgaacggc
     4681 aacggccgcc gtcacggcct cgcgcacggc cacgaagttg cgcacttcga gaaggcggtg
     4741 agggaggctg tcgcgggcgc gggcgtcgag gtcgtcacgc cgctcgtggt gcgcgacgag
     4801 ccggtgggcg tgatactgct cggcgggaag gcgaggggcg agccgttcgg ggcggaagac
     4861 ttagagctcg tgcgctcgct cggccgccac ataggcgtcg gccttcacaa ccaccggctg
     4921 ctgcgcgagg tcgagcgccg ggcggaagag aaccggaggc tctacgagga gcttaagaca
     4981 atttaccgcg acacggtacg cgccttcgcc gcggcgattg actgcaagga caagtacacg
     5041 caggggcatt cggagcgcgt aggcaagtac agcgagataa tcgcgcgaga gatgggctgg
     5101 gacgaggagc aggtcgaggg cattgcggtt gccggctacc tgcacgacat cggcaagctc
     5161 gtcgttgacc gcgacatcat taacgccccc taccgcattg acgccaagaa gtcttcagag
     5221 cttaaccgcc accccgccgc aggctacgaa atcttaaagc cgatctcaca cccgttcgca
     5281 gacatcccgc tgttggcgaa gtaccaccac gagaggcccg acgggcgcgg ttatcccgag
     5341 gggctgaagg gcgacgagat acccgcgggc gcaaggatcg tgagcctcgc cgactcgttc
     5401 gacgcgatga cgaccgaccg gccctaccgc cgccgccgct ccttcgacga ggtcatcgcc
     5461 gacttccgcc gcaacgccgg ccgccagttc gacccgccgg tcgtcgccgc cttctgccgc
     5521 gcgctcctca aggagcttaa aggcgagacg cgcccccgcg ccatcctgcg ccttctgggc
     5581 aagggctacg ttgacgagca gaccgccacg gcccccctcg aaagcctcat ctcagacctc
     5641 gagaccggca ccttcatggc cgccgggcag tcctgaaaaa tttcgtaagg cttacttcgg
     5701 ctgaatcctg agcgtgaagc tggcgatgtc tatcttctcg tcgggctgaa cctgcacgcg
     5761 ctcctcgcgg gcgatctcgc gccccgatac gaaggtgggg ttgcggccct tcggcgtgaa
     5821 ccagtagcgg ccctgctcgt cgcgctcgag cgtcgcgtgc aggcggctca cctccgggtc
     5881 gcccttgatg ggtaggtcaa ccgagacgga cttcgagccg cggccaacgg ttatctccgg
     5941 cttcgcgacg ggtactacgg acttccggac gccgtccttc cagacctcga cgctgtatag
     6001 ctcgacaggg cggatggaga ctttcgtgac ctcgttctcg gcgccttcga ggctgccagt
     6061 ccccgagtcg ccttcgacgg cttggcccaa ttccgcgggc cgcgccgtaa ccatcgtgtg
     6121 gccgccggcc tcggcagtct cccagacggg ctgcacgcgg aactcgccct tgttgagcgt
     6181 gccgtcaacg cggagctcga cggcgaacga cttcgtggcg agctgcgtct ggcccgaaag
//
LOCUS       DASPKR010000318         4673 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1206890, whole genome shotgun sequence.
ACCESSION   DASPKR010000318 DASPKR010000000
VERSION     DASPKR010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4673)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4673
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1206890"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            118..645
                     /locus_tag="VD968_08705"
     CDS             118..645
                     /locus_tag="VD968_08705"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HYE14503.1"
                     /translation="MFCPKCGANNLDDAKFCRSCGADIHLVPQALTGHLPEGALEVRE
                     GEGKAERKKRKKAKEPPTLEQGLENFFLGIAFLVIFLLGLTYFNALYMLWIWFIIPAL
                     AGVGEGIGQVIRSLRESPALPPAAADFRPEAIAPPAARRSELPAADTSEILTPPVSVT
                     ESTTRNLAERSPKDT"
     gene            713..2269
                     /gene="aroE"
                     /locus_tag="VD968_08710"
     CDS             713..2269
                     /gene="aroE"
                     /locus_tag="VD968_08710"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HYE14504.1"
                     /translation="MQSNARICVPVCARMTGELGRVVARAARAGDVIELRLDCLEEGE
                     LARALKELEALAGGVSLPLVFTFRPSAQGGGRDVSLDQRFTFWAALARARRESGIHNP
                     AFADLELDLFESARGRELAGALEGFKLVCSHHDFGGVPSDLEVIFERMMRTPASVLKV
                     AVTARDATDCLPVLALIGRGRREGREVIAVAMGSAGVLTRVLAPSRGSFLTYGSLDAS
                     SATAPGQVTAEELRDLYGVHAVNAETLVTGLVGLPVAHSLSPHMHNAAFRALGVGGVY
                     VPFEVANVSDFLRRMVSPRARELDWPLRGLSVTAPHKTAVLERLDWAEPRAREAGAVN
                     TIVVEGEELRGYNTDAEAALAPLAGVLRMKGSRAAVLGSGGAARSLLLALREAGARMT
                     VFARRVERARGLAEKFGAGAEGLDGASFDGFDLVVNATPLGTRGELQNDTPATAAQLR
                     GARVAYDLVYNPARTRFLREAREAGCETVGGLGMLVAQAERQFELWTGLGAPAGVMRG
                     AAEKTLAAGV"
     gene            2273..3295
                     /locus_tag="VD968_08715"
     CDS             2273..3295
                     /locus_tag="VD968_08715"
                     /inference="COORDINATES: protein motif:HMM:NF013094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HYE14505.1"
                     /translation="MDERYSRQILFGGIGAEGQRRLAEARALVVGCGALGSAQVETLA
                     RAGVGYLKVVDRDFVEASNLQRQTMFTERDARERVPKAAAAARRVAEINSDVRCEFEV
                     VDVNNSNAERLVAGCDVVLDGTDNFSTRFLINDACVKHGVAWVYGAAVGSYGVTMTVR
                     PGLTPCLRCVFPEAPAAGTAPTCDTAGVIMPVISIVAAVQSAEALKLLTGRTESLHGG
                     LMQFDVWRNEWRRIGLKERAPDCPACVLRRFDSLDAEAMELATVLCGRGAVQVTPRGA
                     AEGFSLAALAERLKAVGEVKVNEYLLRLRAGEYELTVFQDARAIVRGTEDAALARSLY
                     ARYVGT"
     gene            3415..>4673
                     /locus_tag="VD968_08720"
     CDS             3415..>4673
                     /locus_tag="VD968_08720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HYE14506.1"
                     /translation="MTIIKSLRRTLTVLALTLLIALVLARPSGAGGPVVWETNSRAEL
                     LNGEARGVSVTSTGALMLAPQFTQIFDTEQAYVWSSAADASGNVYLGTGHDGKIFRVT
                     SEGRGSLLYDAAELDVTALAAGRDGALYAGTSPDGKVYRVGTDGRAEVFFDPPDKYIW
                     SLAFLADGALAVGTGDSGKLYRVRAAGAKAEESLLVDINETHVISLLADGRGNLIAGT
                     DPGGLVLRVSPDGKAFALFDAPLREIHSLALAQDGSIYALALGDAATGPRPAAPAAAT
                     SQQSSAGGGAVTGTVTTVDETTGQVTQFAAQGQPAARSRNELTNARSAVFRIMPDGGT
                     DVLWSSTAVTGFAVAAAPQGGGALLGTSDKGRVYSITNDGRDTLLVQSGEDQVSTFVT
                     RGRELLAASSNGGKLFRLGSESVREGS"
BASE COUNT          703 a         1585 c         1668 g          717 t
ORIGIN      
        1 cgagataggc gcgccgccga gcgtcaccga aggcactacg cgccacctcg gcacgcccgt
       61 cgagcgcaaa cgcgaaggcg cctgacgacg taaggtagag agcaggaggc cggcccagtg
      121 ttctgcccca agtgcggagc caacaacctc gacgacgcga agttctgccg ctcgtgcggc
      181 gccgacattc acctcgtccc gcaggcgctg acgggccacc tgccggaagg cgcgctcgaa
      241 gtgcgcgagg gggaagggaa ggccgagcgc aagaagcgga agaaggcgaa agagccgccg
      301 acgctcgaac aggggctcga gaacttcttc ctcggcatag ccttcctcgt catattcctg
      361 ctcggcctca catacttcaa cgccctctac atgctctgga tctggttcat aatcccggcg
      421 ctcgcgggcg tgggcgaagg catagggcag gtcattcgct cgctgcgcga aagcccggcc
      481 ttgccgccag cggccgccga cttcaggccc gaagccatcg cgcctcccgc cgcgcgccgg
      541 agcgagctgc ccgccgccga cacgagcgag atactgacgc cgccggtcag cgtcaccgag
      601 agcaccacgc gcaacctcgc cgagcgctcg ccgaaggaca catgacggga gagccgccgc
      661 ccgcacgccc ctcacgcgca agtctgatat agttcgacga gagactttcg agatgcagag
      721 caacgcgcga atctgtgtgc cggtctgcgc ccgcatgacg ggcgagctcg ggcgggttgt
      781 cgcgcgcgcg gcccgagccg gcgacgtgat agagcttcgg ctcgactgcc tcgaagaggg
      841 cgagctcgcg cgcgcgctaa aggaactcga ggcgctcgcg ggcggagtca gcctccctct
      901 cgtcttcaca ttccgcccgt ccgctcaggg cggggggcgg gacgtgagcc ttgaccagcg
      961 cttcacattc tgggccgcgc tcgcgcgggc tcggcgggag agcgggattc ataaccccgc
     1021 gttcgcagac ctggagcttg acctgttcga gtctgcgcgc gggcgcgagc tggccggggc
     1081 gctcgaaggc ttcaagctcg tctgctctca ccacgacttc ggcggcgtgc cgtcagacct
     1141 cgaagtgata ttcgagagga tgatgcgcac gcccgctagc gtgctgaagg tcgccgtgac
     1201 ggcgcgcgac gcgaccgact gcctgcccgt cctcgcgctc atcggtcgcg ggcggcgcga
     1261 ggggcgagag gtgattgcgg tggcgatggg atcagccggc gtcttgacgc gagtgctggc
     1321 cccgtcgcgc ggctcgttcc taacttacgg ctcgctcgac gcttcgagcg caaccgcgcc
     1381 ggggcaagtt acggcggaag agctgcgcga cctctacggc gtccacgccg tcaacgccga
     1441 gacgctcgtc acggggctcg tcggcctgcc cgtcgcgcac tcgctctcgc cgcacatgca
     1501 caacgcggcc ttccgcgcgc tcggcgtcgg cggcgtctat gtcccgttcg aggtcgcgaa
     1561 cgtctctgac tttctccgcc ggatggtcag cccgcgcgcg cgcgagctcg actggccgct
     1621 gcggggcctg agcgtgacgg cgccgcacaa gacggcggtg ttggagcgtc tcgactgggc
     1681 agagccgcgc gcgcgtgagg cgggcgccgt gaacacaatc gtggtcgagg gagaagagct
     1741 tcgcggctac aacacggacg ccgaggcggc tctcgcgccg ctcgcgggcg tgttgaggat
     1801 gaaaggctcg cgggccgccg tgctcggctc gggcggcgcg gcccgctcgc tactcctcgc
     1861 actgcgagag gcgggggcgc gcatgacagt cttcgcgcga agggtcgagc gggcgcgcgg
     1921 gctcgccgaa aagttcggcg cgggcgcgga gggcttagac ggcgcgagct tcgacggctt
     1981 cgatctggtc gtcaacgcga cgccgctcgg cacgcggggc gagttgcaga acgacactcc
     2041 cgccacggcc gcgcagcttc gcggggcgcg tgtcgcctac gacctcgttt ataaccccgc
     2101 gcgcacgcgc ttcctccgcg aggcgcgcga ggcgggctgc gagacggtcg gcggcctcgg
     2161 gatgctcgtc gcgcaggccg agcggcagtt cgagctttgg actggattgg gtgcgcctgc
     2221 cggcgtgatg cgcggggcgg cggagaagac actggccgcc ggcgtctgag tcatggacga
     2281 aaggtacagc cgacagattc tgttcggggg gataggcgcc gaggggcagc ggcgcctcgc
     2341 cgaggcgcgc gctctcgtcg tcggctgcgg ggcgctaggc tccgcgcagg tcgagacgct
     2401 cgcgcgcgcg ggcgtcggct accttaaagt tgttgacagg gacttcgtcg aggcgtcgaa
     2461 ccttcagcgg cagacgatgt tcactgagcg cgacgcgcgc gagcgcgtgc cgaaggccgc
     2521 ggccgctgcc cgccgagtcg cggagattaa ctccgacgtg cgctgcgagt tcgaggtggt
     2581 tgacgtgaac aactcgaacg ccgagcggct cgtcgcgggc tgcgacgtgg tgctcgacgg
     2641 gacggacaac ttctcgacgc gcttcctcat aaacgacgct tgcgtcaagc acggcgtcgc
     2701 gtgggtttac ggcgcggccg tcggctccta cggcgtgacg atgacggtga ggcccggcct
     2761 gaccccgtgc ctgcgctgcg tcttcccaga ggcgccggcg gccggcacgg cgccgacgtg
     2821 cgacacggcg ggcgtcatca tgcccgtcat ctcaatcgtc gcggccgtgc agtcggccga
     2881 ggctttaaag ctcctgacgg gaaggacgga gagcctgcac ggcgggctca tgcagttcga
     2941 cgtttggcgc aacgagtggc ggcgcatcgg cctgaaggag cgcgcgccgg actgcccggc
     3001 gtgcgtgctg cgccgcttcg actcgctcga cgccgaggcc atggagcttg cgaccgtgct
     3061 atgcggccgc ggcgccgtgc aggtcactcc ccgcggcgcg gccgaaggct tcagcctcgc
     3121 cgctctggcc gagcggctga aggccgtggg cgaggtcaaa gtcaacgagt acctcctgcg
     3181 ccttcgcgcg ggcgaatacg agctgaccgt cttccaggac gcgcgcgcca tcgtccgcgg
     3241 cacggaggac gccgccctcg cccgctcgct ctacgcgcgc tacgtcggga cgtgaaggcg
     3301 agcccgattc gcctcgcggt ttcacgcgcg accctttcgg gttatgattc agggcgggcc
     3361 gggcgcggag ccgcggcgcc cgcgtaaatt ctggaaagcg tttcttcata gttgatgacc
     3421 ataataaaat ctctgcgccg cactcttacc gttctcgcgc tcacgctctt aatcgcactc
     3481 gtcttggcac ggccttcggg cgcgggcggc cccgtcgtct gggagaccaa ctcgcgcgcc
     3541 gagcttctga acggcgaggc gcgcggcgtc tccgtcacga gcaccggcgc tctcatgcta
     3601 gcgccgcagt tcacacaaat cttcgacacg gagcaggctt acgtttggtc tagcgccgca
     3661 gacgcctcgg gcaacgtcta tctgggcacc ggccacgacg ggaagatttt ccgcgtcact
     3721 tcggaagggc gcggctctct gctctacgac gcggccgagc ttgacgtgac ggcgctcgcc
     3781 gccggccgcg acggcgcgct ctacgctggc acttcgccgg acgggaaggt ttatcgcgtc
     3841 ggcactgacg gccgagccga agtcttcttc gacccgccag acaagtacat ctggtcgctc
     3901 gcctttctgg cggacggcgc gctcgccgtg ggcacgggcg actcgggcaa gctctaccgc
     3961 gtgcgcgcgg ccggcgcgaa ggccgaggag tcgcttctcg ttgacataaa cgagacgcac
     4021 gtcatctctc tgctcgccga cgggcgcggc aacctgatcg ccggcacaga tcccggcggg
     4081 ctcgtgcttc gcgtctctcc ggacggcaag gcgttcgcgc tcttcgacgc gccgctacgg
     4141 gagattcatt ctcttgcgct cgcgcaggac ggctcgatct atgcgctcgc gctcggcgac
     4201 gcggcgacgg ggcctcggcc ggccgcgccc gccgccgcga cctcgcagca gtcgagcgcg
     4261 ggcggcgggg ccgtgacggg cacggtcacg accgttgacg agacgacggg gcaggtcacg
     4321 cagttcgccg cgcagggtca gccggccgcc cggagccgca acgagttgac gaacgcgcgc
     4381 agcgccgtct tccgcataat gcccgacgga gggacggacg tgctctggag ctctacggcc
     4441 gtgacgggct tcgcggtcgc ggccgcgccg cagggcggcg gcgcgctctt aggcacgagc
     4501 gacaaggggc gcgtctattc gatcacgaac gacgggcgcg acacgctgct cgtgcagtcc
     4561 ggcgaggatc aggtttccac gttcgtcacg cgcgggcgcg agctgctcgc ggcgtcgtct
     4621 aacggcggga agcttttccg gctcggctcg gagagcgtaa gggaagggag cta
//
LOCUS       DASPKR010000319         5910 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1853025, whole genome shotgun sequence.
ACCESSION   DASPKR010000319 DASPKR010000000
VERSION     DASPKR010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5910)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5910
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1853025"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            568..2715
                     /locus_tag="VD968_08725"
     CDS             568..2715
                     /locus_tag="VD968_08725"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYE14507.1"
                     /translation="MCRKFLRPAGLLALALALLGGFLPAPPAASAHTDVENGESAYIR
                     DEVNVQLLNPSDLAAVSQQYNLQLISQFGSRPIYRMRVTDGTDSKAKAAALAADIARV
                     SAAEANYTAGAPVGSGFSWTVGFSWTVGFSWTVGGETQYREQWAADKMRLDEAHKVTR
                     GAGQIVAVLDTGVDRNHPALAGRLLQGKDFVDGDDDPSEEMPAGATTVEQAQQLGPYG
                     HGTHVAGLVALAAPEAKIMPLRVLDEHGVGNVWVLMEAVRYALDPDGDPKSDDGADVI
                     NMSLATFNESSFLQQIIGDACADENPAAEGGAATPTPTPATGDARKDVVVVVAAGNHG
                     SEAEMFPAAEDGIEGLLSVGATKSDDTLWEQSQRKWPRVVAPGAGLVSSVPGPGGKTA
                     AWAGTSMAAPLVAGEAALVRAAFPALTPDMVEERVRDATVRFDDDFNSRRVDAARALG
                     RLAPDTPNPIDDTQVFVRQQYMDFLNRAPDAGGQQFWSKGIEGCGADAACVQFNRVNT
                     SAAFFFSIEFRDTGYFVYRLHKAAHGNLPGRPVPVRYEVFMPQTQRIGEGVVVGRPGW
                     QEKLAANREAFLLDFVGSEEFKAAFPAEMPAEEFVNKLFANAEVTPSDGERAALVAEL
                     SAAGGSLQARASVLRQVAENAALFEQESRKAFVLMQYFGYLRRNPDSGPNSDFRGWQF
                     WLDKLNANGGDFHRAEMVRAFIESIEYRARFRQ"
     gene            complement(3034..3924)
                     /locus_tag="VD968_08730"
     CDS             complement(3034..3924)
                     /locus_tag="VD968_08730"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYE14508.1"
                     /translation="MESHEELVGLLPEELTRRRFVVTSLFAGFALAVRPAAGQSVITT
                     DTQGLVAGEVKIPVRDGEIPAYRAMPEKGKNFPVVLVVQEIFGVHEHIKDICRRFAKL
                     GHMAIAPELYARQGDTAQLKEMSKILEIVAKVPDAQVMSDLDASVAYAEATGKGNSKR
                     LGITGFCWGGRAVWLYAAHNPDLDAGVAWYGRLVARSGQPANPSTPRQPVDVAGELKA
                     PVLGLYGGKDQGIPLDTVERMREALKKSESKAARESEIVVYPEAGHGFHADYRPMYDK
                     EAAADGWRRLLAWFKKHGAA"
     gene            4014..4754
                     /locus_tag="VD968_08735"
     CDS             4014..4754
                     /locus_tag="VD968_08735"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HYE14509.1"
                     /translation="MPSRKSHVRVGCCGFRSSRESYYEALRAVEVQHTFYQPPRTETL
                     RRWREEAPRGFEFALKAWQLITHRASSPTYKRLKRELTEEEREGAGSFRSTAVVAGAW
                     DVTRACAGALGARAVLFQCPASFRPTEENVENLRGFFRGVARDGFDFCWEPRGGWPRE
                     LVRELCEELDLWHAVDPFAERTVTPRRCYFRLHGRRGWRYKYETAELEELLSLLPKNR
                     RSYVFFNNVEMLDDARRFREMAEAGSEL"
     gene            4851..5249
                     /locus_tag="VD968_08740"
     CDS             4851..5249
                     /locus_tag="VD968_08740"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYE14510.1"
                     /translation="MSEQDNVGVVSRAYENFKKGDIESLMGQMSEDVDWRLPSIEKVP
                     FSGARRGRASVGEFFSSLAGAQEVRSFEPREFIAQGDKVVALGSYEWGVKTTGRGYGG
                     EWAHVFTVRDGKIVGFHEYMDTAAAAKAYA"
     gene            complement(5264..>5910)
                     /locus_tag="VD968_08745"
     CDS             complement(5264..>5910)
                     /locus_tag="VD968_08745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14511.1"
                     /translation="PVSMIVVCVVALLAGAGLGVVVLTLMRGDDTGAGARDTAQRRAA
                     ESEPAVRDEAAIGAAALPAEGAREQAASDDDALAAGTAEEAAAPGDARAELRGALESW
                     LAATNARDLDSQMGFYDSTLEAFYLSRGASRSAVRAEKARAFSGASSVEVSAAEPEIT
                     LTRDGATAVMRFRKKYSVEGSGGARRGEVLQELRWRRTPRGWKIISERDLRVIR"
BASE COUNT          929 a         2040 c         2010 g          931 t
ORIGIN      
        1 catcggcatt tgacgttggg attaaggctc ttgcgacttc gccgctcccg cccggggagg
       61 ctgttaaggg cggaggcggc ttcggccgaa cggccggagg caaaagtcta ttggcgcgcg
      121 ccgcgcgttg tcaaacacgg cccgtgggta gagcttgaac tccggcgcgg gccggattca
      181 taattccggc cataagcgga gaacaaacac aaaacctttc tgacgcccgc gccttcaggc
      241 agctcgtcat cgctcgcttc gacgccttag acagtcgaaa gcctcgaacc taagtaagcg
      301 taagcagccg ctcccaccca cccgcagcgg ccctcgtccg caagagcccc tcccgcccgt
      361 gatcgcctcc acgcggcaga tgacaaaatt aacccgcccc gtctccgtaa aaaagccggg
      421 cgggggcgta tttttgcgcc cctccgaggc actgtttcga cgggccggag catctaaggt
      481 cgttgcccgt acgcccccga ctcgctcaat tattcagccc tggcccttaa acttttgccc
      541 gaccggagtt tccacggagc cccagcaatg tgccgcaagt tcctacgccc cgccgggctg
      601 cttgccctcg ccctagcgct gctcggggga ttcctgcccg cgccgcccgc agcctcggcg
      661 cacacggacg ttgagaacgg cgaaagcgcc tacatccgcg acgaagtcaa cgtccaactc
      721 ctcaacccct cggacctcgc cgccgtctcg cagcagtaca acctacagct cataagccag
      781 ttcggcagcc gccccatcta ccgtatgcgg gtgacggacg gcacggactc gaaggcgaag
      841 gcggcggcgc ttgcggccga cattgcgcgc gtctcggccg ccgaggccaa ctacacggcg
      901 ggcgcccccg tcgggagcgg cttctcgtgg acggtgggct tctcctggac tgtcggcttc
      961 tcttggactg tgggcgggga gacgcagtac agggagcagt gggcggcgga caagatgcgc
     1021 ttggacgaag cgcacaaggt gacgcgcggg gcgggccaga tagtggccgt gctcgacacg
     1081 ggcgttgacc gcaaccaccc ggcgctcgcg ggccggctcc tgcaaggcaa ggacttcgtg
     1141 gacggcgacg acgacccgag cgaggagatg ccggcgggcg cgaccacggt cgagcaggcg
     1201 cagcagctcg gcccctacgg ccacggcacg cacgtcgccg gcctcgtcgc actcgccgcc
     1261 cccgaggcga agataatgcc gctgcgcgtg ctcgacgagc acggcgtcgg caacgtctgg
     1321 gtgctgatgg aggcggtgcg ctacgcgctc gacccggacg gcgaccccaa gtctgacgac
     1381 ggtgccgacg taatcaacat gagcctcgcg accttcaacg agtcgtcttt ccttcagcag
     1441 ataatcggcg acgcctgcgc cgacgagaac ccggcagccg agggcggggc ggccacgccg
     1501 accccgacgc ccgcgaccgg cgatgcgcgc aaggacgtgg tcgtcgtcgt agccgccggc
     1561 aaccacggca gcgaggccga gatgttcccc gcagccgagg acggcatcga ggggctgctc
     1621 tctgtgggcg cgacgaagtc ggacgacacg ctctgggagc agtcgcagcg caagtggccg
     1681 cgcgtggtgg cgccgggcgc ggggctcgtc agcagcgtcc ccggcccagg cgggaagacc
     1741 gcggcgtggg ccggcacttc gatggccgcc ccgctcgtcg cgggcgaggc cgcgctcgtg
     1801 cgcgccgcct tcccggcgct gacgcccgac atggtcgagg agcgcgtgcg cgacgcgacc
     1861 gtgcgcttcg acgacgactt caactcgcgc cgcgttgacg cggcccgcgc cctcggcagg
     1921 ctggcgcctg acaccccaaa cccgattgac gacacacagg tgttcgtccg ccagcagtac
     1981 atggattttc tcaaccgcgc gccggacgcg ggcggtcagc agttctggtc gaagggcata
     2041 gagggctgcg gcgcggacgc cgcctgcgtg cagttcaacc gcgtgaacac gtcggccgcc
     2101 ttcttcttct cgatagagtt ccgcgacaca ggctacttcg tctatcggct gcacaaggcc
     2161 gcgcacggca acctgccggg caggcccgtc cccgtccgct acgaggtctt catgccgcag
     2221 acgcagcgga taggcgaagg ggtcgtggtg ggccgccccg gctggcagga gaagctcgct
     2281 gccaaccgtg aggcgttcct gctcgacttc gtcggcagcg aagagttcaa ggcggccttc
     2341 cccgccgaga tgccggccga agagtttgtc aacaagctct tcgctaacgc cgaggtaacg
     2401 ccttcggacg gggagcgggc cgcgctcgtc gccgagctga gcgccgcggg cgggagcctt
     2461 caggcgcggg cctcggtgct caggcaggtg gctgagaacg ccgcgctctt cgagcaggag
     2521 tcgaggaagg ccttcgtcct gatgcagtac ttcggctatc tcaggcgcaa cccggacagc
     2581 ggccccaact ctgacttccg cggctggcag ttctggctcg acaagctcaa cgcgaacggc
     2641 ggcgacttcc accgcgccga gatggtcagg gccttcatcg agtccatcga gtaccgcgca
     2701 cgcttccgcc agtagggcat tcttcacatg aacaaactag gtgaggcggc ccggaggccg
     2761 cctcccttaa gtttttcaca ccaatttttt aattaattct tccccgcgta tttttccgcg
     2821 cggcggccgc actgttacgc cgtagccatc gtgcctcggc cccgcgccgt tccacatatg
     2881 gcaaccggct cgggcgctcg taacggggag agcgggcgcc cacgccggcc gggcggtagc
     2941 ggtcgcgctg gccgcgccgc ccacaaagac gggagcgggg cgaagaactg acagacacct
     3001 ccgtcagttc ttcgccccgc tcccgtcttt tcttcaagcc gccccgtgct tcttgaacca
     3061 ggccagcagc cggcgccagc cgtcggcggc ggcctccttg tcgtacatgg gccggtagtc
     3121 cgcgtggaag ccgtggccgg cctccggata gacgacgatt tcggattcgc gcgccgcctt
     3181 cgactccgat ttcttcagcg cctcgcgcat cctctcgacc gtgtccagcg gtatcccctg
     3241 atccttcccg ccgtagaggc cgagcacggg cgccttcagc tcgccggcaa cgtccacggg
     3301 ctgtcgcggc gtcgaggggt tcgcgggctg gcccgagcgc gcgacgaggc ggccgtacca
     3361 cgccactccg gcgtcgaggt cggggttgtg cgcggcgtag agccagacgg cgcggccgcc
     3421 ccagcagaag ccggttatcc ccagccgctt cgagttcccc ttccccgtcg cctccgcgta
     3481 ggcgaccgag gcgtccaggt cggacatcac ctgcgcgtcc ggcacctttg cgactatctc
     3541 cagaatcttc gacatctcct tgagctgcgc cgtgtcgccc tgccgcgcgt aaagctcggg
     3601 cgcaatcgcc atgtggccga gcttggcgaa gcggcggcag atgtctttta tgtgctcgtg
     3661 gacgccgaaa atctcctgca cgacgagcac gaccgggaag ttcttgccct tctccggcat
     3721 cgcgcggtag gcgggaatct cgccgtctcg gacgggaatc ttgacctcgc cggccacaag
     3781 gccctgcgtg tcggtcgtaa tcacgctctg gccggcggcg ggccgcaccg cgagcgcgaa
     3841 gcccgcgaag aggctcgtca cgacgaagcg cctgcgcgtc agctcctccg gcaggagccc
     3901 tactaactct tcgtgcgact ccatctggat ttcctttcgg gggtttcggg ctcggcacac
     3961 tctagcgcag gccgcggcgc ggttggaagc cccggccgtg ctatttttac ggcatgcctt
     4021 cccgaaaatc gcacgtccgc gtgggctgct gcggcttccg ctcctcgcgc gagtcgtact
     4081 acgaggcgct ccgcgcggtc gaggtgcagc acaccttcta ccagccgccg cgcacggaga
     4141 cccttcggcg ctggcgcgag gaggcgccgc gcggcttcga gttcgcgctg aaggcctggc
     4201 agctaatcac gcaccgggcg tcgagcccga cctacaagcg gctcaagcgc gaactgaccg
     4261 aggaggagag ggagggggcg ggctctttcc ggagcacggc cgtcgtcgcc ggggcgtggg
     4321 acgtgacgcg cgcgtgcgcc ggggcgctgg gcgcgcgcgc cgtcctcttc caatgccccg
     4381 cgagcttccg gccgactgag gagaacgtcg agaacctgcg cggcttcttc cgaggcgtcg
     4441 cgcgggacgg cttcgacttc tgctgggagc cgcgcggcgg ctggccgcgc gaacttgtca
     4501 gagagctgtg cgaggagcta gacctctggc acgcggttga ccccttcgcg gagaggactg
     4561 tgacgccgcg ccgctgctac ttccgtctgc acgggcggcg cggctggcgc tacaagtacg
     4621 agacggcgga gctggaagag ctcctatcgc tgctcccgaa gaacaggcgc tcctacgtct
     4681 tcttcaacaa cgtcgagatg ctcgacgacg cacgccgctt ccgcgagatg gccgaggccg
     4741 ggagcgaact ttaaggccgc ggcgggccgg cgcgggcgtg catccgttcc ggcccgcggg
     4801 ctcgtatgta agtgagaaac cagtccggcg ggcgaaagga gccgagagag atgagtgaac
     4861 aggataacgt gggcgtcgtc agccgcgcct acgagaactt caagaagggc gacatcgagt
     4921 cgctcatggg gcagatgtcg gaggacgttg actggcggct gccctcgata gagaaagtcc
     4981 ccttctcggg cgcgcggcgc gggcgcgcga gcgtcggcga gttcttctcg tcgctcgcgg
     5041 gcgcgcagga ggttcgcagc ttcgagccgc gcgagttcat agcgcagggc gacaaggttg
     5101 tggcgctcgg ctcttacgag tggggcgtga agacgacggg gcgcggctac ggcggcgagt
     5161 gggctcacgt cttcaccgtg cgcgacggga agatcgtggg cttccacgag tacatggaca
     5221 cggccgcggc ggcaaaagcc tacgcgtgag cgggccgcgc ccgtcaccga atcactctga
     5281 ggtcgcgctc ggagattatc ttccagccgc ggggggtgcg gcgccagcga agctcctgca
     5341 agacctcgcc gcggcgggcg cctcccgagc cctcgacgct gtacttcttt cggaaacgca
     5401 tgacggccgt cgcgccgtcg cgggtgagtg ttatctcggg ctcggcggcg ctcacctcga
     5461 cgctcgacgc gcccgagaag gcgcgggcct tctcggcgcg cacggccgag cgcgaggcgc
     5521 cgcgcgagag gtagaaggct tcgagagtcg agtcgtagaa gcccatctga ctgtcgaggt
     5581 cgcgcgcgtt cgtggccgcg agccagcttt cgagcgcgcc gcgaagctcc gcgcgcgcgt
     5641 cgcccggagc ggcggcctct tcggccgtcc cggcggcgag agcgtcatcg tcgctggctg
     5701 cctgctctct ggccccttcg gcaggcaggg cggcggcgcc tatggctgct tcgtcgcgca
     5761 cggccggctc gctctccgcg gcgcggcgct gcgccgtgtc gcgcgccccg gcgccagtgt
     5821 cgtcgccgcg catgagcgtg agcaccacga cgcctagccc cgcgcccgcg agcagcgcga
     5881 cgacgcagac gacaatcatg ctgaccggca
//
LOCUS       DASPKR010000320         6923 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1077202, whole genome shotgun sequence.
ACCESSION   DASPKR010000320 DASPKR010000000
VERSION     DASPKR010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6923)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6923
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1077202"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1142)
                     /locus_tag="VD968_08750"
     CDS             complement(<1..1142)
                     /locus_tag="VD968_08750"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HYE14512.1"
                     /translation="MASASTAAAQRQFDKAEFAARRARLFEQIADGVAIIFAAGPHVH
                     AVKFRQAPDFYYLTGIEEPSAVLLMVGKTRQAFVFVRKRPRWQVNIEGPGLLDAEKPA
                     ETYGLAGVLPVEEFRPTLAAHAEGARKLYVPLTPPDSLQLSRGEVEGHEAALASHPVV
                     PHASAVKQAVARLRELHPSVQFEDVNPLLDRMRWVKSPYEIERMRRSGRIAAEGLKAA
                     IRGTRPGMFEYELEAAARFVQTKMGARGDAFTPIVASGPNTVTWHYQSNDRQMQAGDV
                     VLMDYGADFDYYTSDITRTWPVSGKFTPEQEKMYLCVLEARDRLISMMKPSVTIKQMQ
                     DAAEEVYTRHGFRQQFLELGRYVGHPVGLSVHDVGGHGPEVTLRAGV"
     gene            complement(1311..2054)
                     /locus_tag="VD968_08755"
     CDS             complement(1311..2054)
                     /locus_tag="VD968_08755"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HYE14513.1"
                     /translation="MRLLSYNIRYGGTGRERLIASVIRGCDADVVLLQEATHPHVVER
                     LAAETGLKAWAARPGHSLAFLSRLEISHHEWHRPSGSRHPLLEVVPAGTELRLFGLHL
                     SAVHSAPTEWRRVREMRALLRGTEHLRGGPHVLAGDFNTLAPGESLDWRRLPPRLRPF
                     VWLSGGRVRYQTIPLLLGEGYADAYRLLHPQDAGHTFPTWGAHVRLDYFFIPARFADR
                     IEDCRVVTSHPDAAPASDHFPLLAQLKPD"
     gene            complement(2061..2549)
                     /locus_tag="VD968_08760"
     CDS             complement(2061..2549)
                     /locus_tag="VD968_08760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14514.1"
                     /translation="MSEEAAAKGPMSEEEMRERVIKLAFGGDCSRFDEFCDCVRAAVP
                     GGTSVVLRGSAVTGVRWDDGAPFDADGPGTSDLDLTLVGEEVLGFYILDGFYLPGVHT
                     KPLSDKDPDIAPDLVPLREKLVAMTGRPVNIQATRDFVMQVREKWFGQPYLTLLGKVG
                     EP"
     gene            complement(2607..3521)
                     /locus_tag="VD968_08765"
     CDS             complement(2607..3521)
                     /locus_tag="VD968_08765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013935283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine acetyltransferase"
                     /protein_id="HYE14515.1"
                     /translation="MNEKIGGAARSLVESYSREGVKIHHLDRRPLPSRAEAVRVIDAL
                     QELLFPGYTGAQGLTGASLRLHVESRMAWLYEALTEQISRAITHGERLDDACPVTERQ
                     ATECAEDFLSRLPSIRETLASDVRAAYDGDPAAVCLDEIIFSYPGVYAVTVYRLAHEL
                     HRLGVPLIPRIMTEHAHHRTGIDIHPGTSIGPSFFIDHGTGVVVGGTAVIGRNVKLYQ
                     GVTLGAFSFDKDSTGQLVRDTKRHPTIEDDVVIYAGATILGGDTVIGRGSVIGGNVWL
                     THSVPPGTRVLQESPKLRFITAEGAAAS"
     gene            complement(3643..3900)
                     /locus_tag="VD968_08770"
     CDS             complement(3643..3900)
                     /locus_tag="VD968_08770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14516.1"
                     /translation="MAEAKNELENNDNPVDDRGTDAAGGLALLRRLRDAGFEADDEKF
                     AVVLGRPVEEVTAWMQGSEPPDDDIIMKARGIARERGIEVE"
     gene            complement(3893..4138)
                     /locus_tag="VD968_08775"
     CDS             complement(3893..4138)
                     /locus_tag="VD968_08775"
                     /inference="COORDINATES: protein motif:HMM:NF012621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HYE14517.1"
                     /translation="MKTELHIQGMHCESCAENIKETLEETAGVKSADVTFGGKTAVVE
                     HDDAVVQQATLIKKIQDLGYTATVGDQQQQRGAGQNG"
     gene            4349..6091
                     /locus_tag="VD968_08780"
     CDS             4349..6091
                     /locus_tag="VD968_08780"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14518.1"
                     /translation="MKKIIVCALVLFAAAAPSPARQGGGRGAAGVYYRDGVRYALDGR
                     LDEAAAAFEQAARLDPKDGDAHFSLGNVYSEQGRWTDAIAAYRKAVSLKKNDGEAYNG
                     LGVALAARGEYEKAAVALRKAAEIFPQWAEPRFHLSHVYRKLGREGEARAAYSEALAR
                     RPDYAQSPPRSFTAQFVKARVEPRAERAAASTGATTNTPTEVRTNAGTAPPPRASAPA
                     PTAGTATPRPVVSEADAQFQLGVRHAAAGRDLEAAAAFERAVSSGKGDAETYQALGAA
                     YARLGRWRESVGAYEQAVRLEPKNSAAYEALGRSYARLRETEPAAPAAAPATKAAPAA
                     PATDADPTAVYRVGPGDVLEVRTPGNAQASLHKVTPAGLLDYPRLGAPLEVSGLTTGE
                     IEARLRAELERRDSPAGQVSVGVREYESHAVIISGMVKDPGTKILRREGVPLYVIVAY
                     AQPLAGAGEALVASKASGRTTAVNLSDTQAMGMLVRSGDVITVRALPEQFYYIAGAVR
                     QPGQKSFTLGLTLTQAVLAAGGVSARDAATATVSRQGDDGRLTTTSYNLRDIEAGRAP
                     DPALRPGDRVEVGR"
     gene            6117..6869
                     /locus_tag="VD968_08785"
     CDS             6117..6869
                     /locus_tag="VD968_08785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14519.1"
                     /translation="MTDDADKTGAPLFPDEGPFNPVVPLSEIGGEVARAAPEQGDGEE
                     AATLIRPRARRAAPPAPAHEDDGRASFVQSWPATLLVVGLSLVAGMLAGVFLLGARRT
                     AETHEPATAVEEAARADETTLTDAHAPETAAEPEPSPAPRAAEPDEPAPVAAGVKPSA
                     GASAPVVNAPEARRETAAETPARKSEERVSARSSSSPRPAAPVNTADTRRASAPAPAP
                     RRTEPRVAPRDTQPPVFSPTPRPDGKKVIPWP"
BASE COUNT         1048 a         2369 c         2459 g         1047 t
ORIGIN      
        1 accccggcgc gcagagtcac ctcggggccg tggccgccca cgtcgtggac ggagagcccg
       61 acggggtggc cgacgtagcg gcccagctca aggaactgct ggcggaagcc gtggcgagtg
      121 taaacttctt cggcagcgtc ctgcatctgc ttaatcgtca cgctcggttt catcatcgag
      181 attaggcggt cgcgggcttc gagcacgcag aggtacatct tctcctgctc gggcgtgaac
      241 ttgccggaga cgggccacgt acgcgtgatg tcggaggtgt agtagtcgaa gtcggcgccg
      301 tagtccatga ggacgacgtc gccggcctgc atctgccggt cgttgctctg gtaatgccac
      361 gtcaccgtgt tcggccccga cgcgacgatg ggagtgaagg cgtcgccgcg cgcgcccatc
      421 ttcgtctgca cgaagcgcgc ggccgcctcc aactcgtact cgaacatgcc ggggcgtgtg
      481 ccgcggattg cggccttcag cccctcggcg gcgatgcggc cgctccgtcg catgcgctcg
      541 atctcgtagg gcgacttcac ccagcgcatc ctgtctagca aggggttcac gtcctcgaac
      601 tggacggaag ggtgaagctc gcgcaggcgc gcgacggcct gcttgaccgc cgaggcgtgg
      661 gggacgacgg ggtgcgaggc gagcgccgcc tcgtggcctt ctacctcgcc gcggctgagt
      721 tgcaggctgt cgggcggcgt gagaggcacg tagagcttgc gggcgccctc ggcgtgcgcg
      781 gcgagcgtgg gccggaactc ttcgacgggg agcacgcctg cgaggccgta agtctccgcg
      841 ggcttctccg cgtcgaggag gcccggccct tcgatgttca cctgccacct cggcctcttg
      901 cgaacgaaga cgaaagcctg ccgcgtcttc ccgaccatca ggagcacggc cgacggctct
      961 tctatgccgg tcaggtagta gaagtcgggc gcctggcgga acttgacggc gtggacgtgc
     1021 ggcccggcgg cgaagatgat ggcgacgccg tctgctatct gctcgaacag gcgggcgcgg
     1081 cgcgcggcga actccgcctt gtcgaactgc cgctgcgccg cggccgtcga agcggaagcc
     1141 aagagtaaga gagcgaagac gaaggcgctg agagtcgttc tcgtctgacg ggtcatcgga
     1201 tcggaggctc ctgattatga atttgctcaa aagctagcac gtttcaacgc gcccgcgggc
     1261 gtttttgttg caggtacgaa ggcgtggacg gaaatccaac gtcgctgtcg tcaatcgggc
     1321 ttgagctgcg cgagcagggg gaagtggtct gaggcgggtg cggcgtcagg gtgagaggtg
     1381 acgacgcggc agtcttcgat gcggtcggcg aagcgcgcgg ggatgaagaa gtagtcgagc
     1441 cgcacgtgcg cgccccatgt ggggaaggtg tggcctgcgt cctgcgggtg cagcaggcgg
     1501 taggcgtcgg cgtagccctc gccgagcagg agcgggatgg tctggtagcg gactcttccg
     1561 ccgctcagcc acacgaaggg gcgcaggcgc ggcgggagcc tgcgccagtc gagcgactcg
     1621 cccggcgcga gcgtgttgaa gtcgcccgcg agcacgtgcg ggccgccgcg caggtgctct
     1681 gtgccgcgca ggagggcgcg catctcgcgc acgcgcctcc actcggtcgg ggcggagtgc
     1741 accgcgctca ggtgcaggcc gaacagtcgc aactctgtgc cggcggggac gacttcgagc
     1801 agagggtggc gcgagcccga ggggcggtgc cactcgtgat gagagatttc gaggcggctc
     1861 aggaaggcga gcgaatggcc gggccgcgcg gcccacgcct taaggccggt ctcggcggcg
     1921 aggcgctcga cgacgtgcgg gtgcgtggcc tcctgaagca ggacaacgtc ggcgtcgcag
     1981 ccgcgtatga cggaggcgat gagtcgttcg cggcccgtcc cgccgtagcg tatgttgtag
     2041 ctgagtagcc tcacgcggcg tcacggctcg ccgaccttgc ccaggagcgt caggtatggc
     2101 tggccgaacc acttctcgcg cacctgcatc acgaagtcgc gcgtggcctg tatgttgacg
     2161 gggcggcccg tcatcgccac gagcttctcg cgcaggggga cgaggtcggg cgcgatgtcc
     2221 gggtctttat cgctcagcgg cttcgtgtgg acgccgggca ggtagaagcc gtcgagtatg
     2281 tagaagccga ggacttcttc gccgacgagc gtcaagtcaa ggtcgctcgt gccggggccg
     2341 tcggcgtcga acggcgcgcc gtcgtcccac cgcacgcccg tcacggcgct cccccgcagc
     2401 acgaccgacg tgcctccggg gacggccgcg cgcacgcagt cgcagaactc gtcgaagcgg
     2461 gagcagtcgc ccccgaacgc gagcttaatc acacgctcgc gcatctcctc ctcgctcatc
     2521 ggccctttgg ccgccgcctc ttcgctcatc ccttgaagcc cccctcgcac gatgacattg
     2581 aaagtataaa agcttgtcgg cgcgcgtcac gacgcggccg cgccctcggc cgtgatgaag
     2641 cggagcttgg gcgactcctg taggacgcgc gtgcctggcg gcacgctgtg agtgagccag
     2701 acgttgccgc cgatgacgga gccgcggccg atgacggtgt cgccgccgag tatggtggcg
     2761 ccggcgtata tcaccacgtc gtcctcgatg gtcgggtggc gcttggtgtc gcgcacgagc
     2821 tggcccgtcg agtccttatc gaaggagaag gcgccgagcg tgacgccctg gtagagcttg
     2881 acgttgcggc cgatgacggc cgtgccgccg acgacgacgc ccgtgccgtg gtcaatgaag
     2941 aagctcggcc cgatggaggt gccggggtga atgtctatgc ctgtgcggtg gtgcgcgtgc
     3001 tcggtcatta tgcgggggat gagcgggacg ccgaggcggt gaagctcgtg cgcgaggcga
     3061 tagaccgtga cggcatagac gccggggtag ctgaagatta tctcgtcgag gcagacggcc
     3121 gccgggtcgc cgtcgtacgc ggcgcgcacg tccgaggcga gcgtctcgcg tatcgagggc
     3181 aggcgcgaga ggaagtcctc ggcgcactcg gtcgcctgcc gctcggtgac tgggcaggcg
     3241 tcgtcgagtc gctcgccgtg cgttatggcg cggcttatct gctcggtgag cgcctcgtag
     3301 agccaggcca tgcgcgactc gacgtgcagg cgcagggaag cccccgtcag cccctgcgcg
     3361 cccgtgtagc cggggaagag aagctcctga agggcgtcaa tgacgcgcac ggcctcggcg
     3421 cgcgacggca gcggccgccg gtcgaggtgg tgaatcttca cgccctcgcg cgagtacgac
     3481 tcgacgagcg agcgagcggc gcccccgatc ttctcgttca taaatggagc agcaagtaac
     3541 cagtagtcag tagccggtag aagagccttc tttagctaac cgccatgccg aaggcgtcgg
     3601 cgcccgcggt gcggggccta ccggctaccg gctaccggct acttattcga cctctatgcc
     3661 gcgctcgcgg gcgatgccgc gggccttcat gatgatgtcg tcgtcggggg gctcggagcc
     3721 ctgcatccag gccgtgacct cctcgacagg gcggccgagc acgacggcga acttctcgtc
     3781 gtcggcctcg aagccggcgt cgcgcagccg cctgaggagc gcgaggcccc ccgcggcgtc
     3841 agtcccgcgg tcgtccacgg ggttgtcgtt gttctctagc tcgttcttcg cctcagccat
     3901 tctgtcccgc ccccctttgc tgctgctggt cgcccacggt cgccgtgtag cccaagtcct
     3961 gaatcttctt aatcagcgtg gcctgctgaa ccacggcgtc atcgtgctct acgacggcgg
     4021 tcttgccgcc gaacgttacg tcggcgctct tgacgccggc cgtctcctcg agcgtctcct
     4081 ttatgttctc ggcgcacgac tcgcagtgca tgccctgtat gtgaagctcg gtcttcatcc
     4141 ctcctcctcc ggctcgcgct tgaatttttt tgaccctctt gacgctcatt atgcggcgac
     4201 tcgcggcgga tggacaagcc gccggggcgc gaatataatc gcgcccgagt cgcgaagaag
     4261 tgaccgacag gctctcccgc cgggttcccc gtccccttca ccgtcaaccg tattcgcgtg
     4321 cgaccctgac aagggaggtg tttgcccttt gaagaagata atcgtgtgcg cgctcgttct
     4381 ctttgcggcc gccgcgccct ccccggcgcg tcagggcgga gggcgcggcg cggccggcgt
     4441 ctattaccgc gacggcgtca ggtacgcgct cgacggccgc ctggacgagg cggccgccgc
     4501 attcgagcag gccgcgcgcc tcgacccgaa ggacggcgac gcgcacttca gcctcggcaa
     4561 cgtctattcg gagcaggggc gctggacgga cgccatcgcg gcctaccgca aggctgtctc
     4621 tcttaagaag aatgacggcg aggcttacaa cgggctgggc gtagcgctcg cggcgcgcgg
     4681 cgagtacgag aaggcggccg tcgcgttgcg caaggccgcg gaaatcttcc cgcagtgggc
     4741 cgagccgcgc ttccacctga gccacgtcta taggaagctc ggccgggaag gtgaggcgcg
     4801 cgccgcctac tccgaggcgc tagcgcgacg gcccgactac gcgcagagcc cgccgcgctc
     4861 cttcaccgca cagttcgtaa aggcgcgcgt cgagccccgc gccgaaaggg ccgccgccag
     4921 caccggcgcc acgacgaaca caccaaccga ggtcaggact aacgccggca cggcgccgcc
     4981 gccgcgcgcg agcgcccccg cgccgacggc cggcacggcc acgccgcgcc cggtcgtgag
     5041 cgaggccgac gcgcagttcc agctcggcgt gaggcacgcg gccgcggggc gcgaccttga
     5101 ggcggccgcc gccttcgagc gcgccgttag ctcaggcaaa ggcgacgccg aaacctatca
     5161 ggcgctcggc gcggcctacg cccgcctcgg gcgctggcgc gagtccgtcg gcgcatacga
     5221 gcaggccgtg cgtctggagc cgaagaactc ggccgcatac gaggcgctcg gcaggtctta
     5281 cgcgcgcctg cgcgagaccg agcctgccgc tccggcggct gcgcccgcga cgaaggccgc
     5341 gcccgccgcg cccgcgacgg acgcagaccc gacggccgtc tatagggtcg gccccggcga
     5401 cgtgctagaa gtccgcacgc cgggcaacgc gcaggcgagc ctgcacaagg tcacgccggc
     5461 cgggctcctg gactacccgc gcctcggcgc gccgcttgag gtctcggggc tcacgaccgg
     5521 ggagatagag gcgaggctcc gcgcggagct tgagcgccga gactcgccgg ccgggcaggt
     5581 ctccgtcggc gtgcgcgagt acgagagcca cgccgtcatc atcagcggca tggtcaaaga
     5641 ccccggcacg aaaatcctgc ggcgcgaggg cgtgccgctc tacgtcatcg tcgcctacgc
     5701 gcagccgctc gcgggggcgg gcgaggcgct cgtcgcgtcg aaggcgtcgg ggcgcacgac
     5761 ggccgtcaac ctctccgaca cgcaggcgat gggcatgctc gtgcgctcgg gcgacgtgat
     5821 aacggtccgc gccttgcccg agcagttcta ctacatcgcg ggcgccgtca ggcagccggg
     5881 gcagaagagt ttcactttgg gcctgacgct cacgcaggcg gtgctcgcgg cgggcggcgt
     5941 ctcggcgcgc gacgcggcga cggcgaccgt ctcgcggcag ggcgacgacg ggcggctcac
     6001 gaccaccagc tacaacctcc gcgacatcga ggccggccgc gcgcccgacc cagcccttcg
     6061 gcccggcgac cgcgtagagg tcgggaggtg aacgcgctta tcaggagacg acttgagtga
     6121 cagacgacgc cgacaagacg ggcgcgccgc tcttccccga cgaggggcct ttcaaccccg
     6181 tcgtcccgct ctcggagata ggcggcgagg tcgcgcgcgc tgcgcctgag cagggcgacg
     6241 gcgaagaggc ggcgacgctc atacgcccgc gcgcgcggcg cgccgcgccg cccgccccgg
     6301 cgcatgaaga cgacggccgc gccagcttcg tgcagtcctg gccggccacg ctcctggtcg
     6361 tcgggctgtc tctagtcgcc ggcatgctcg cgggcgtctt tctgctcggc gcgaggcgga
     6421 ctgccgaaac tcatgagccc gcgacggccg tcgaggaggc cgcgcgcgcc gacgaaacta
     6481 ctctgaccga cgcgcacgcg cccgagacgg ccgctgagcc cgagccttcg cccgcgccgc
     6541 gcgcggccga gcctgacgag cccgcccccg tagccgcggg cgttaagccg agcgccgggg
     6601 ccagcgcccc tgtcgtcaac gctcccgagg cccggcgcga gactgccgcc gagactccgg
     6661 cacgaaagag cgaagagcgc gtctctgctc gttcatcgtc ttcgccacgc cccgccgccc
     6721 cggtaaatac cgccgacacg cgcagggcat cggcgcccgc gccggccccg cgcaggacag
     6781 agccgcgcgt agcgccgcgc gacacgcagc cgcccgtctt ctcgcccacg ccgcgccccg
     6841 acggcaaaaa agtcatcccc tggccctgat gcctcgcggc ctctgctaaa ctcccccgcg
     6901 tggatgaagg ccccgcgagc aga
//
LOCUS       DASPKR010000321         4727 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1466372, whole genome shotgun sequence.
ACCESSION   DASPKR010000321 DASPKR010000000
VERSION     DASPKR010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4727)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4727
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1466372"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1805)
                     /locus_tag="VD968_08790"
     CDS             complement(<1..1805)
                     /locus_tag="VD968_08790"
                     /EC_number="2.2.1.2"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF007080.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional transaldolase/phosoglucose
                     isomerase"
                     /protein_id="HYE14520.1"
                     /translation="MPNRLTEIMRLGQSIWYDNIRRAMLSTGDLARKIEEDDLRGVTS
                     NPTIFEKAITGSTDYDEQLRSLVESGRGVSEIYEELVAEDIARAADILRPVYDRTRAL
                     DGYISLEVNPRLAYDTQGTIEEASRLFKRLGRPNVMIKIPAAQEGLPAIEESIYRGVN
                     INVTMIFSIENYEQVAEAYIRGLERRAAEGLPVERIASVASFFVSRVDTAVDAELEAR
                     ARHASAPEERERLQALCGRAANANAKLAYQKFKEIFHGERFRALKEKGAMVQRPLWAS
                     TGTKNPKYSDVLYVDNLIGPETVNTVPPATYTAIRDHGRVALTLEEGVDDARALINQL
                     AEVGIDLKAVTEKLQLDGLKAFVSSFDTLVESIEAKRDALLSGIHGRLSASLGRHADA
                     VAAAIKEADAGDVMRRIWRKDAALWKSEEDHQKVIKNSLGWLNVADEMIGVEDELIEY
                     AGRISGEGFRHVVVCGMGGSSLCPEVLRRTFGRQDGFPELLVLDSTDPDTIAALEDEI
                     DVGKTLFVIASKSGTTTEPLMFYRYWYDRARKASDNPGRNFVAVTDPGTKMEADAARD
                     GFRRIFLNPPDIGGRYSALSYFGVAPAALMGLDIA"
     gene            complement(1978..2784)
                     /locus_tag="VD968_08795"
     CDS             complement(1978..2784)
                     /locus_tag="VD968_08795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14521.1"
                     /translation="MFRRFSMFALVCALLACAGQPPALAAAQKKEGKTPTAEEVAETV
                     VLIYGARERLAQIRRTGVERGRITRTAEDGRTEEITYERSFKRGESFEKDKIRLDQRR
                     PTLEYSLIFNEGKVFGVVRGTAFTPRAQDVSTFLSDRVHGLDALLRYKESGATVKFAG
                     KETHKGLDLWLLDLEDKEKNRTRFFVSAKTGRVLWLEFEETPPGGGSPVKYKRTFHDY
                     RIVQGTYFPYRSVLYEGDRLVEEAQVLTVTYGVKMEDTIFQSPQSASIQP"
     gene            3111..4355
                     /locus_tag="VD968_08800"
     CDS             3111..4355
                     /locus_tag="VD968_08800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14522.1"
                     /translation="MKKVGILVGRERTFPAALIDSINARGEGEVTAEYVKIGGVRHDG
                     GKQYDLIIDRISHEVPFYRAYLKRQALEGTQIINNPFWWSADDKFFNYSLAEKLGVAV
                     PKTVLLPQKSYIESITGESLRNLEFPLDWEGITDYVGFPAFIKPHDGGGWKNVSRVNS
                     LEELWRVYDTTGTLCMTLQEMVDWDQFVRCYCIGQDEVMIMPYDPRKPYLSGEQYIEN
                     PSYLSAELAQRVANDVRTLCAALGYDINTVEFAIKGDVPYAIDFMNPAPDAELASVGP
                     FYHNWLTRAVTDLVFRRLSEPQAAPTYRWDALLSPASASAVTAPLAAAASAAGASVDA
                     VLPQSVRELPSEVASTVTELVGQATGIVSGIVETVTDAVSGEPEEKKTVRRTRTAPAS
                     KKAPAKKGSATRTKKTPTPPEV"
     gene            4520..>4727
                     /locus_tag="VD968_08805"
     CDS             4520..>4727
                     /locus_tag="VD968_08805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14523.1"
                     /translation="MMNITPKLISNCAALLLLLLASAASTARAQESLSAGGKEVYDAV
                     KAASLTGGVADVKGLVLKRDRAEMT"
BASE COUNT          816 a         1511 c         1545 g          855 t
ORIGIN      
        1 ttcgcgatgt cgagccccat gagcgccgca ggcgccaccc cgaaatagga gagcgccgag
       61 tagcggccgc ctatgtcagg cgggttgagg aagattctgc ggaacccgtc acgcgcggcg
      121 tccgcctcca tcttcgtccc ggggtcggtg acggcgacga agttgcgtcc ggggttatcg
      181 cttgccttgc gggcgcggtc gtaccagtag cggtagaaca tcagcggctc ggtcgtcgtc
      241 cccgacttcg acgcgatgac gaagagggtc ttgccaacgt caatctcatc ttcgagcgcg
      301 gcgatggtgt ctgggtcggt cgagtcgagc acgagcagct cggggaagcc gtcctggcgg
      361 ccgaaggttc ggcgcagcac ctcggggcag agcgacgagc cgcccatgcc gcagaccacg
      421 acgtggcgga agccctcgcc gcttatgcgg cctgcgtact cgatgagctc gtcctcgacg
      481 cctatcatct cgtcggccac gttgagccag cccagggagt tcttgattac cttctggtga
      541 tcctcctccg acttccagag cgccgcgtcc ttgcgccata tgcggcgcat cacgtcgccc
      601 gcgtcggcct ccttaatcgc cgccgcgacc gcatctgcgt gcctgccgag cgaggcgctg
      661 aggcggccgt gtatgccgga gagcagcgcg tcgcgtttgg cctcgatgga ctcgaccagg
      721 gtgtcgaagg agcttacgaa agccttgagg ccgtccaact gaagcttttc cgttacggcc
      781 ttcaggtcaa tgcctacctc cgcgagctga ttgatgaggg cgcgggcgtc gtcaacgccc
      841 tcttcgagcg tgagggcgac ccggccgtgg tcgcgtatgg ccgtgtaggt cgcgggcggg
      901 acggtgttga ccgtctcggg gccgatgagg ttgtcaacgt agagcacgtc ggagtacttc
      961 gggttcttcg tccccgtcga ggcccagagc gggcgctgaa ccatcgcgcc tttttccttc
     1021 agcgcgcgga accgctcgcc gtggaaaatc tccttgaact tctggtaggc gagcttagcg
     1081 tttgcgttgg cggcgcgtcc gcacagggct tgcaggcgct cgcgctcttc cggcgccgag
     1141 gcgtggcgcg cgcgggcctc aagctccgcg tcaacggccg tgtcaacgcg cgagacgaag
     1201 aagctggcga ccgacgcgat gcgctcgacg ggcagaccct cggcagcgcg acgctccaag
     1261 ccccgaatgt aagcctccgc gacctgctcg tagttctcaa tcgagaagat catcgtgacg
     1321 ttgatgttca cgccgcggta gatgctctcc tcgatggccg gcaggccctc ctgcgcggca
     1381 gggattttta tcatcacgtt gggccggccc aaacgcttga agaggcgcga ggcttcttca
     1441 atcgtcccct gggtgtcgta ggcgagccgg gggttgactt cgagactgat gtagccgtcg
     1501 agcgcgcggg tgcggtcata gacggggcgg agtatgtcgg cggcgcgggc gatgtcttcg
     1561 gcgacaagct cctcgtagat ttcggagacg ccgcggccgg actcgacgag cgagcgtagc
     1621 tgctcgtcgt agtcggtcga gcccgtgatg gccttctcga agatggtcgg gttagaggtg
     1681 acgccgcgca ggtcgtcctc ctctatcttg cgcgcgaggt cgccggtcga gagcatggcg
     1741 cggcgaatgt tgtcgtacca gattgactgg cctagccgca ttatttcggt aagacggttg
     1801 ggcattaatc gctcctgaaa atgttactta agaggccgct cgcggtgaag tggccggata
     1861 ctatcacagt agccggaggc ggacaaaaac cttttcgccc gccgaaactt gaaaggcccg
     1921 cctgtcttca agacaggcgg gcctgaacct cgtaccgagt attagcgctt gtccgactta
     1981 cggctgtatc gaggccgact gcgggctctg gaagatggtg tcttccatct tcacgccgta
     2041 ggtgacggtg aggacttgcg cctcctcgac gagccggtcg ccctcgtaga gcaccgagcg
     2101 gtaggggaag tatgtgccct gcacgatgcg gtagtcgtgg aaggttctct tgtacttgac
     2161 gggcgagccg ccgccggggg gcgtctcctc gaactcgagc cagaggacgc ggcccgtctt
     2221 cgcgctcacg aagaagcgcg tgcggttctt ctccttgtct tccaagtcga gcagccagag
     2281 gtcgagcccc ttgtgtgtct ccttgccggc gaacttgacg gtggcgccgc tctccttgta
     2341 gcgcagcagc gcgtcgaggc cgtgtacgcg gtcggagagg aaggtggaaa cgtcctgcgc
     2401 gcggggcgtg aaggcagtgc cgcgcacgac gccgaagact ttgccctcgt tgaaaatcag
     2461 cgagtactcg agcgtgggcc ggcgctggtc gaggcggatt ttgtccttct cgaaagactc
     2521 gccgcgcttg aagctgcgct cgtaggtaat ctcctctgtc cgcccgtcct cggccgtgcg
     2581 cgtgatgcgg ccgcgctcga cgcccgtccg ccttatctgc gccaggcgct cgcgcgcacc
     2641 gtagatgagc acgaccgtct cggccacctc ttcggcagtc ggagtcttcc cctccttctt
     2701 ctgcgccgcc gccagagccg ggggctgccc cgcgcaggcg agcagggcgc acaccagcgc
     2761 gaacatcgaa aagcgtctga acacgaaact tgtctccttc aatcctttta ccttcggtcg
     2821 ggcggcggcc gggggccaag cgcctagagg agtggccggc cttgaatttc cggggattgt
     2881 agcacagccg cggcccgcca agcgcccggc gcgcgcggcc cctcgtgggg ctcaagtatt
     2941 gatgccaaat gctttcggcc ggatgcccgt tcgcgccgcg ttgacaaccc agacttcgag
     3001 catatagagt gcaacgtttt catgaagcag gcggcgggcg actgtgggcg cgctctcggg
     3061 ccttaccggt gccgccgcgc cgtcattctt cgaaaggaca cctgagaacc gtgaaaaaag
     3121 tagggattct ggtaggccgc gagaggactt tcccggcggc gctaattgac agcatcaacg
     3181 cccgcggcga gggcgaggtt acggccgagt acgtcaagat cggcggcgtc cgccacgacg
     3241 gcgggaagca gtacgacctg ataattgacc gtatctcgca cgaagtcccc ttctaccgcg
     3301 cgtacctgaa gcggcaggcg ctcgaaggca cgcagatcat caacaacccc ttctggtggt
     3361 cggccgacga caagttcttc aactactcac tcgccgagaa gctgggcgtc gccgtcccga
     3421 agaccgtcct gctgccgcag aagagctaca tcgaaagcat cacgggcgaa tccctgcgca
     3481 acctcgagtt cccgctcgac tgggagggca tcaccgacta cgtgggcttc cccgccttca
     3541 tcaagccgca cgacggcggc ggctggaaga acgtctcgcg cgtcaacagc ctcgaagagc
     3601 tctggcgcgt ctatgacacg acggggacgc tctgcatgac cttgcaggag atggttgact
     3661 gggatcagtt cgtgcgctgc tactgcatag ggcaggacga ggtgatgata atgccctacg
     3721 acccgcgaaa gccctacctc tccggcgagc agtacataga gaacccgagc tacctctcgg
     3781 ccgagctggc gcagagggtc gcgaacgacg tgcgcacgct ctgcgcggcg ctcggctacg
     3841 acatcaacac cgtagagttc gccatcaagg gcgacgtgcc ttacgcgata gacttcatga
     3901 accccgcgcc ggacgccgag ctcgcgtcgg tcggcccctt ctaccacaac tggctgacaa
     3961 gggccgtcac cgacctcgtc ttccgccgcc tctccgagcc gcaggcggcg ccgacatacc
     4021 ggtgggacgc gctcctgagc ccggcgtcgg cctccgcggt gacggcgcct ctggccgccg
     4081 cagcttcggc cgcgggagcg tcggttgacg ccgtgctccc gcagtctgtg cgcgagctgc
     4141 cgtccgaggt cgcttcgacc gtgaccgagc tagtcgggca ggcaacggga atcgtctccg
     4201 ggattgtgga gaccgtgacc gacgcggtct cgggcgagcc cgaagaaaaa aaaaccgtga
     4261 ggcgcacgcg gacggcccca gcctcgaaga aggcgccggc taagaaaggc tccgcgacgc
     4321 gcaccaagaa gacgcccacg ccgccggaag tctaaggcgt cggcgcggcc gggcgcctaa
     4381 aatagaaatt gcttggaggg cgggcgcggc tgcgctcgcc cctttttttg tgtaaaattc
     4441 agtccttggt tgagccacgc gcgggctccc cgccgcgcct ctcacaccct tacgactcta
     4501 tataacaagg tgagcgataa tgatgaacat aacccccaaa ctcatcagca actgcgccgc
     4561 gctgctcctc ctcctgctcg cttcggcggc ctcgaccgcg cgcgcgcagg agagcctctc
     4621 ggccggaggc aaggaagtct atgacgccgt aaaggccgcc tcgctcacgg gcggcgtggc
     4681 ggacgtgaaa gggctcgtgc tcaagcgcga ccgcgccgag atgacct
//
LOCUS       DASPKR010000322         2432 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_430681, whole genome shotgun sequence.
ACCESSION   DASPKR010000322 DASPKR010000000
VERSION     DASPKR010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2432)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2432
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430681"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..618
                     /locus_tag="VD968_08810"
     CDS             <1..618
                     /locus_tag="VD968_08810"
                     /inference="COORDINATES: protein motif:HMM:NF013215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14524.1"
                     /translation="YFRVGSEHSVRRYRTYGVTTLRNHHLEIKQGGRLVFSFTGKHHI
                     KHRRILVDEEMAALVRDIKALGGPHLFSYIGDDGARRPVRPRDVNDYIKSAISPEFSA
                     KDFRTWGGTLLAAVALAEIGCCDDERRAKRNVVAAVRRVAEHLGNTPSVCRECYIHPR
                     VIEAYFRGQTIEEFRPRRARSRIVRQSPEYTVEELALLKLLRAGE"
     gene            complement(622..1353)
                     /locus_tag="VD968_08815"
     CDS             complement(622..1353)
                     /locus_tag="VD968_08815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14525.1"
                     /translation="MIRHAPFSVAVLIAALLFSAAEASARQGDRAKVAAEIESLREQI
                     KAKEAQLLAPPAEDFERYAGFLAAPRTGLVRLLPRESWDGKLTLRGGGAFYSFARRSH
                     DYNDGPDIELAQNLFMVGFAGADFGFITLLGDVPLETVSAETAAVQFMAAYKAPSTEP
                     EARKGARQFQPAHTEGSWQYTRAQAVAEGKTYAVRSIVYGESDVLVAFRVVGRDSDGS
                     VVLLWKMLKKFPTPSLEGGAPSAGS"
     gene            complement(1454..>2432)
                     /locus_tag="VD968_08820"
     CDS             complement(1454..>2432)
                     /locus_tag="VD968_08820"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF013319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HYE14526.1"
                     /translation="VEKYGATFDRSHAERHRIPVEDGWQIPWGGKGKPERGLEQLGSL
                     GSGNHFIELQRSQQTGTLFVQVHTGSRGFGHGLATNYFELAREEHPELMKDIDLGYFT
                     PESRHYRDYLNAVAAGGNYAILNRLVIFEQVSEAFREVFGEDLELIYEISHNLVQKEW
                     HPDLGDVWVHRKGATRAFPAGHPFLKGTHWEGTGHPVLIPGSNKDWSYILRPLAGAER
                     SGFSVNHGAGRRISRGEATRTLSQREMDDAYREAGVVVNADGHVPLDEAAPCYKPSED
                     VVAAVVGAGLAEVEHRLWPLASLKGVDERKGGRRGRKARKPGRKTSEHY"
BASE COUNT          374 a          849 c          804 g          405 t
ORIGIN      
        1 tacttccgcg tcggctccga gcacagcgtc cgccgctacc gcacatacgg cgtcacgacg
       61 ctgcgcaacc atcacctgga gattaagcag ggcggccgcc tcgtcttctc cttcacgggc
      121 aagcaccaca taaagcaccg gcgcatactc gttgacgagg agatggccgc gctcgtgcgc
      181 gacataaagg cgctgggcgg cccgcacctc ttcagctaca taggcgacga cggcgcgagg
      241 cgccccgtca ggccgcgcga cgtgaacgac tacataaagt ccgcgatctc gcccgagttc
      301 tcagccaagg atttccgcac gtggggcggc actcttctgg ccgccgtcgc gctggccgag
      361 atagggtgct gcgacgacga gcggcgggcg aagaggaacg tcgtggcggc cgtcaggcgg
      421 gtcgccgagc acctgggcaa tacgccctcg gtctgccgcg agtgctacat acacccgcgc
      481 gtgatagaag cctacttccg ggggcagacc atagaggagt tccgcccgcg ccgcgcccgc
      541 agccgcatcg tacgccagtc gcccgagtac acggtcgaag agctggcgct cctcaagcta
      601 ctgcgcgccg gcgagtgagc tttaagagcc ggccgacggc gcgccgcctt cgagcgacgg
      661 cgtggggaac tttttcagca tcttccagag cagcacgacg ctcccgtccg agtctctgcc
      721 cacgacgcgg aaggcgacga gcacgtcgga ctcgccgtaa acaatcgagc gcacggcgta
      781 ggtcttcccc tcggcgaccg cctgcgcgcg cgtgtactgc cagctcccct cggtgtgcgc
      841 gggctggaac tgccgcgcgc ccttgcgcgc ctcgggctcc gtcgaaggcg ccttgtaggc
      901 ggccatgaac tgcacggccg cggtctcggc cgagaccgtt tcgagcggca cgtcgcccag
      961 gagggtgatg aagccgaagt cggcgcccgc gaagccgacc ataaagaggt tctgcgcgag
     1021 ctctatgtcc gggccgtcgt tgtagtcgtg cgagcggcgc gcgaacgagt agaaggcgcc
     1081 gccgccgcgc agcgtcagct tcccgtccca cgactcccgc ggcaggagtc gcacaagccc
     1141 ggtgcgcggc gcggcgagga acccggcgta gcgctcgaaa tcttcggccg ggggcgcgag
     1201 caactgcgcc tccttcgcct ttatctgctc acgtagagac tctatctccg ccgcgacctt
     1261 cgcgcggtcg ccctgccgcg cggacgcctc tgcggccgag aataagagtg ctgctatcag
     1321 gacggcgacg gagaaggggg cgtgtctaat catgcttcac ctcgaatctc gaagatgtgt
     1381 gtgggagaga cgctcgggcg cgagttttag cccctgccgc gcgggcccgt aaagatttat
     1441 ccgacggccg cgctcagtag tgctcgctcg tcttgcggcc cggcttccga gctttcctcc
     1501 cgcgcctgcc gcctttgcgc tcgtccacgc ccttgagcga ggcgagcggc cagagcctgt
     1561 gctctacctc cgcgagcccc gcgccgacga cggccgcgac cacgtcctcc gagggcttgt
     1621 agcagggcgc ggcctcgtcg agcgggacgt gaccgtcggc gttcacgacg acgccggcct
     1681 cgcggtaggc gtcgtccatc tcgcgctgcg agagcgtgcg cgtggcctcg ccgcgcgaga
     1741 tgcggcggcc ggcgccgtgg ttgacggaga agccgctgcg ctccgccccg gccaggggcc
     1801 gcagtatgta gctccagtcc ttgttgctgc ccggtatgag cacggggtgg cccgtcccct
     1861 cccagtgcgt ccctttcaga aaagggtggc ccgccgggaa ggcgcgcgtc gcgcccttgc
     1921 ggtgaaccca cacgtcgccg agatcggggt gccactcctt ctgcacgagg ttgtggctta
     1981 tctcgtagat tagttccaga tcttcaccga agacttcacg gaacgcctcc gacacctgct
     2041 cgaagatgac gaggcggttc agtatggcgt agttgccgcc cgcggcgacg gcgttcaggt
     2101 agtcccggta gtggcgcgac tccggcgtga agtagccgag gtctatgtcc ttcatcagct
     2161 ccgggtgctc ctcgcgcgcc agctcgaagt agttggtcgc cagcccgtgc ccgaacccgc
     2221 ggctccccgt gtgcacctgc acgaagagcg tccccgtctg ctgggagcgc tgcaactcga
     2281 tgaagtggtt gcccgacccg aggctcccca actgctccag gccccgctcc ggtttccctt
     2341 tgccgcccca cggtatctgc caaccgtcct cgacggggat gcggtggcgc tcggcgtggc
     2401 tgcggtcgaa ggtcgccccg tacttctcga cg
//
LOCUS       DASPKR010000323         6080 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_42429, whole genome shotgun sequence.
ACCESSION   DASPKR010000323 DASPKR010000000
VERSION     DASPKR010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6080)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6080
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42429"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..395
                     /locus_tag="VD968_08825"
     CDS             <1..395
                     /locus_tag="VD968_08825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14527.1"
                     /translation="SAQAGRVTAAYGTSGGAAPLTVRPIGVKSVSVSPSSVVGGGQSA
                     VAVKLECAAGPSGVFVTLRVNKGRAAKFIDPSSGQGVNPLTLVPASTSQMTFQIQTYK
                     VASDEGVNVSATAGGATKNARLQVRAGP"
     gene            complement(441..1748)
                     /locus_tag="VD968_08830"
     CDS             complement(441..1748)
                     /locus_tag="VD968_08830"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE14528.1"
                     /translation="MKFIRYSRFKGFDVSGVNLGDLMEALQDSLLSSGFDDDYYWARQ
                     RREPDQSLDALRQALLQALLETGELSERDVEEMLAENSGQFRGSQLEELLNQLIERLV
                     EEGYLKLREEPPGERRRGQGGEGEPLPRDVKFEVTEKGLDFLGYKTLRSLLGSLGKSS
                     AGRHDTQHLSTGVEAAQVSKPYEFGDTINLDVNATLMSAIKREGMGVPLNLEYGDLHV
                     HQQDYQSSCATVVMLDCSHSMILYGEDRFTPAKKVALALAHLIRTQYPGDSLKVVLFH
                     DDAEELPLARLATTQVGPYHTNTAEGLKLARRILQAQRKEMKQIVMVTDGKPTACFLD
                     SSAAGAGRARAFGELRGGRRLYKNSMGGDPVVMDATFREVQACRKAGVMINTFMLATD
                     YYLVEFVKQMTQMTNGKAYFATPGNLTQFVLIDFLRRKTSRVK"
     gene            complement(1758..3227)
                     /locus_tag="VD968_08835"
     CDS             complement(1758..3227)
                     /locus_tag="VD968_08835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14529.1"
                     /translation="MSLPRTLGELKQQGYRVRPVKDEMRANLLRKLRAGERIFPGIVG
                     YDDTVIPQLVNAVLARHNLILLGLRGQAKSRIIRQLVALLDPVVPAIEGSEVNDDPFR
                     PISAYGRQTVEREGDRTPITWVERDARFVEKLATPDVTVADIIGDVDPIKAARGGHLL
                     SDELTIHYGLLPRANRGLFAINELPDLAGKIQVGLFNIMQEGDVQIKGYPVRLPLDVM
                     LVFSANPEDYTARGKIITPLKDRIGAEISTHYPSELRLGVEITRQEAWTEREGVEGAL
                     RIPDFVRETIEQIAFEARDDQRIDKRSGVSQRMPITVTESAVSNAERRALLTGEEEIV
                     PRVSDIYAAVPSMTGKMELEYEGEQVGAAKIARDLIKRAAGEVFEGYFVGIDFSRAVR
                     WFDEGNNLRLADTASATECVTLLDSVPDLIDTVLDPLDIKRSDEAMLVSACEFALEGL
                     YAQNKISRNEEGGYTAATKARKDRRGMIYDDLTETGRYS"
     gene            complement(3258..4622)
                     /locus_tag="VD968_08840"
     CDS             complement(3258..4622)
                     /locus_tag="VD968_08840"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYE14530.1"
                     /translation="MKTTEPSRKKGGAAAGGDLTARLSALNSDIAVALIKGDTLGETL
                     QHCAEALVRNLDAAFARVWTLDDSRSVLELQASAGMYTHLDGAHARVPVGKFKIGLIA
                     EERRPHLTNSVVGDPRVGDQEWAAREGMVSFAGYPLVVEDRLVGVMAMFARRPLNDEV
                     LRAMEAVAHGIAVGIRRKQTEHELQESERRFRTLTDAMPQLVWATDADGAHTYFNHRW
                     YEYTGLTEEESLGFGFTNALHPEDKGRTLARWERAWREGEGYEIEYRIHSRPEGQYRW
                     FLGRAMPLRDESGRITQWVGTCTDIEEQKQMEALLARLNDERERMLEEVSTPVVPVLE
                     GVLVLPLIGSLDTVRMERATKAALQEVARHGARACIIDITGARIVDSHAVANLSNLSM
                     SLRLVGAEAYVTGVGAHAAQSLIGLGLDFGGVRTYRTLAQALAALLRAGARAGKPDGG
                     APRQ"
     gene            complement(4645..>6080)
                     /locus_tag="VD968_08845"
     CDS             complement(4645..>6080)
                     /locus_tag="VD968_08845"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE14531.1"
                     /translation="VFWGRRSSRMAYLPGFYAFPGGQLDESDAEVEVAGAADAETARM
                     TACAARELFEEVGVLAARGAETLTKGQLASVLDDLTSGRMSFAELLRHYGLRLDASDF
                     RFAGRWVTPPFSPRRFDTLFFVVRCPRKQEPRPVTEEFDAGEWATPSDALSRWSRAEA
                     LAVPPVVHALRSLAGGTGEGLFERLLSIPQAHRAPVRRIEFLPGFTCFPVRTPTKPPA
                     TTTNCYIVGTGEFVVIDPASPYEDEQAALSEFVRELLEGGRRLREIILTHLHPDHVGG
                     VGALRESLGGRLPVAAHKLTADALGSVVRVDRFIEDGELIELTGDPVIALRAMHTPGH
                     ARGHLSFYEESYGALLTGDNIVGLGSVLIDPPEGNMRDYLRTLERYRALPRLNVLFGA
                     HGPAVGTPRAKIDEYVSHRLERERQILGAVRAGAESVEEIVARAYTDVSPKLHAMAAR
                     SVLAHLEKLEEDGLVKSAGGRVTPAGP"
BASE COUNT          899 a         2022 c         2124 g         1035 t
ORIGIN      
        1 cctcggcgca ggccgggcgg gtgacggccg cttacggcac gtcgggcggc gccgcgccgc
       61 tgaccgtgag gccgataggc gtgaagagcg tgtcggtctc gccttcctcg gtcgtgggcg
      121 gcgggcagag cgcggtcgcc gtcaaactcg aatgcgctgc cgggccttcg ggagtcttcg
      181 tgacgctgag ggttaacaag gggcgcgctg ccaagttcat agacccctct tccgggcagg
      241 gcgtgaaccc gctgacgctc gtgccggcga gcacgagcca gatgacgttc cagatacaga
      301 cttacaaggt ggcgagcgac gagggcgtca acgtctcggc cacggcgggc ggggccacta
      361 agaacgcgag gcttcaggta agggcggggc cgtgaggcgc ggtggcccga gccgcgcgag
      421 ggcgggcgaa ggcgacgccg tcacttgacg cggctcgtct tacgtctcag gaagtcaatc
      481 agcacgaact gcgtgaggtt gccgggggtg gcgaagtacg ccttgccgtt cgtcatctgc
      541 gtcatctgct tgacgaactc gacgaggtag tagtctgtag ccagcatgaa ggtgtttatc
      601 atcacgccgg ccttgcggca cgcctgaacc tcgcggaacg tggcgtccat cacgacgggg
      661 tcgccgccca tcgagttctt gtagaggcgg cgcccgcccc gcagctcgcc gaaggcgcga
      721 gcccgccccg cgcccgccgc cgacgagtcg aggaagcagg ccgtcggctt gccgtccgtc
      781 accatcacta tctgcttcat ctccttgcgc tgcgcctgaa ggatgcggcg cgcgagcttc
      841 aggccctcgg ccgtgttcgt gtggtacggg ccgacctgcg tggtggcgag gcgcgcgagc
      901 ggcagctcct cggcgtcgtc gtggaagagg acgaccttga gcgagtcgcc ggggtactgc
      961 gtgcgtatca agtgcgcgag cgcgagcgcg accttcttgg ccggtgtgaa gcgatcctcg
     1021 ccgtagagga tcatggagtg cgagcagtcg agcatgacga ccgtcgcgca cgaagactgg
     1081 tagtcctgct ggtggacgtg caggtcgccg tactcgaggt tgagcgggac gcccatgccc
     1141 tcgcgcttga tggcagacat gagcgtggcg ttcacgtcca agtttatcgt gtcgccgaac
     1201 tcgtagggct tgctcacctg cgcggcctcc acgcccgtgg agaggtgctg cgtgtcgtgg
     1261 cggccggccg acgacttgcc gaggctgccc agcaggcttc tcaaggtctt gtagccgagg
     1321 aagtccaagc ccttctccgt cacctcgaac ttcacgtcgc gcggcagcgg ctcgccctcc
     1381 ccgccctgcc cgcgccgccg ctcccccggc ggctcctccc tcagcttcag gtagccctcc
     1441 tcgaccagcc gctcgatgag ctggttcaga agctcctcca actgcgagcc gcggaactgc
     1501 ccagagttct ccgcgagcat ctcctcaacg tcgcgctccg acagctcgcc cgtctcaagt
     1561 agcgcttgca gcagcgcctg cctcagcgcg tccaacgact gatccggttc gcgcctctgc
     1621 cgcgcccagt agtagtcgtc gtcgaacccc gaggagagca gcgagtcctg caacgcctcc
     1681 atcaggtcgc ccaggttcac ccccgacacg tcgaagccct tgaatctcga atagcgtatg
     1741 aacttcataa gcggccttta gctgtagcgg cccgtctcgg tcaggtcgtc gtagatcatg
     1801 ccgcggcggt ctttgcgcgc tttggtggcg gcggtgtagc cgccctcctc gttgcggctt
     1861 atcttgttct gggcgtagag cccttcgagg gcgaactcgc aggcggatac gagcatggcc
     1921 tcgtcggagc gtttgatgtc gagggggtcg aggacggtgt caatcaaatc cggcacggag
     1981 tcgaggagcg tgacgcactc cgtggccgag gccgtgtcgg cgagccggag gttgttgccc
     2041 tcgtcgaacc agcggacggc gcgcgagaag tctatgccga cgaagtagcc ctcgaagacc
     2101 tcgcccgccg cgcgctttat caaatccctc gctatcttcg ccgccccgac ctgctcgccc
     2161 tcgtactcca actccatctt gcccgtcatc gaaggcacgg ccgcgtagat gtccgagacg
     2221 cgcggcacta tctcctcctc gccggttagg agcgctcgcc gctcggcgtt cgagaccgct
     2281 gactcggtga cggtgatggg catgcgctgc gagacgccgg agcgcttgtc tatgcgctgg
     2341 tcgtcgcgcg cctcgaaggc tatctgctcg atggtctcgc gcacgaagtc gggtatgcgc
     2401 agggcgcctt cgaccccctc gcgctcagtc caagcctcct gcctcgttat ctcgacgccg
     2461 agccgcagct ccgaggggta gtgcgtggaa atctcggcgc cgatgcggtc tttgagcggc
     2521 gtgattatct tgccgcgggc ggtgtagtcc tccgggtttg cggagaagac gagcatcacg
     2581 tcgaggggca ggcgcacggg gtagccctta atctgcacgt cgccctcctg catgatgttg
     2641 aagaggccga cctgtatttt gcccgcgagg tcgggcagct cgtttatggc gaagaggccg
     2701 cggtttgcgc ggggcaggag gccgtagtgt atggtcagct cgtcgctcaa cagatgcccg
     2761 ccgcgcgcgg ccttgatggg gtcaacgtcg cctatgatgt cggcgacggt cacgtcgggc
     2821 gtggcgagct tctcgacgaa tcgggcgtcg cgctcgaccc acgtgatggg cgtgcggtcg
     2881 ccctcgcgct cgaccgtctg gcggccgtag gccgagatgg ggcggaaggg gtcgtcgttg
     2941 acctcagagc cctcgatggc cggcaccacc gggtcgagca gggcgacgag ctgccggatg
     3001 atgcggctct tggcctggcc gcgcaggccg agcaggatga ggttgtggcg cgccagcacg
     3061 gcgttgacga gctgcggtat gacggtgtcg tcgtagccga cgatgccggg gaaaatcctc
     3121 tcgcccgcgc gcagcttgcg gaggaggttg gcgcgcatct cgtccttgac ggggcgcacg
     3181 cggtagccct gctgcttcag ctctccaagc gttctcggta gtgacatcgc tttaacagtt
     3241 gaccccttgt gtgttgatta ctgacgcggc gcgccgccgt cgggcttgcc ggcgcgggcg
     3301 cccgcgcgga ggagcgcggc caaagcctgc gcgagcgtgc ggtaggttct gacgccgccg
     3361 aagtcgagcc cgagcccgat gaggctctgc gcggcgtgcg cgcccacgcc cgtcacgtat
     3421 gcctcggcgc cgacgagccg cagcgacatc gagaggttcg acaggttcgc gacggcgtgc
     3481 gagtcaacga tgcgcgcgcc cgtgatgtct atgatgcagg cgcgggcgcc atgccgcgcg
     3541 acctcctgaa gcgcggcctt cgtcgcccgc tccatcctca cggtgtcgag cgagccgatg
     3601 agcgggagca ccagcacgcc ttcgagcacg gggacgacgg gagtggagac ctcttcgagc
     3661 atgcgctcgc gctcatcgtt caggcgcgcg agcagcgcct ccatctgctt ctgctcctct
     3721 atgtccgtgc aggtgccgac ccactgagtt atgcggcccg actcgtctcg caggggcatg
     3781 gcgcggccga ggaaccagcg gtactgccct tcggggcgcg agtggatgcg gtactctatc
     3841 tcgtagccct cgccctcgcg ccaggcgcgc tcccagcgcg cgagcgtgcg ccccttgtcc
     3901 tcagggtgca gcgcgttcgt gaagccgaag ccaagagact cctcctcggt gaggcccgtg
     3961 tactcgtacc agcggtggtt gaagtaggtg tgggcgccgt cggcgtccgt ggcccagacg
     4021 agctgcggca tcgcgtcggt gagcgtgcga aagcggcgct cgctctcctg caactcgtgc
     4081 tcggtctgct tgcgccttat gccgaccgct atgccgtgcg cgacggcctc catcgcccgc
     4141 agcacctcgt cgttcagcgg ccgccgcgcg aacatagcca tcacgccgac gagcctgtct
     4201 tcgaccacga gcgggtagcc ggcgaacgag accatcccct cgcgcgcggc ccactcctga
     4261 tcgcccacgc gcgggtcccc gacgacggag ttcgtcaggt gcggcctacg ctcctcggct
     4321 atcagcccta tcttgaactt gccgacgggg acgcgcgcgt gcgcgccgtc gaggtgcgtg
     4381 tacatgccgg cgctggcctg caactccagg acgctgcgcg agtcgtcgag cgtccagacg
     4441 cgcgcgaacg cggcgtcgag gttgcgcacc agggcctcgg cgcagtgctg aagcgtctcg
     4501 cccagcgtgt cgcccttgat gagcgcgacg gcaatgtcgg agttgagcgc cgaaagtcgc
     4561 gccgtcaggt cgccgcctgc tgccgcgccg cccttttttc gcgaaggctc cgtggttttc
     4621 atgttcgtcg gggatgtcag aagtctaggg cccggcaggc gtgacgcgcc cgccggcgct
     4681 tttcaccaag ccgtcctctt cgagcttttc gaggtgcgcg agcaccgagc gcgcggccat
     4741 cgcgtgcagc ttcgggctga cgtccgtgta ggcgcgcgcg actatctctt cgacactttc
     4801 ggcgcccgcc cgcacggccc cgagtatctg gcgctcgcgt tcgaggcggt gcgagacgta
     4861 ctcgtcaatc ttggcgcgcg gcgtgccgac cgccgggccg tgcgcgccga agaggacgtt
     4921 caggcgcggc agggcgcggt agcgctcgag cgtgcggagg tagtcgcgca tgttgccctc
     4981 gggcgggtca atcaggacgg agccgaggcc cacgatgttg tcgcccgtaa ggagcgcccc
     5041 gtagctctcc tcgtagaagg aaaggtggcc gcgcgcgtgg ccgggcgtgt gcatcgcgcg
     5101 cagggcgatg acggggtcgc ccgtaagctc gatcagctcg ccgtcctcga taaagcggtc
     5161 aacgcgcacg acggagccaa gggcgtcggc cgttaactta tgcgccgcga cggggagccg
     5221 gccgcccaga gactcgcgca gggcgcccac gccgccgacg tggtcggggt gcaggtgcgt
     5281 gaggattatc tcgcgcaggc ggcgcccgcc ttcgagaagc tcgcggacga actcagagag
     5341 ggccgcctgc tcgtcctcgt agggcgaggc cgggtcaatg acgacgaact cgccggtccc
     5401 gacgatgtag cagttcgtcg tagtcgctgg cggcttcgtc ggcgtccgca cggggaagca
     5461 ggtgaagccg ggcaaaaact cgatccttcg gacgggcgcg cggtgggcct gcgggatgct
     5521 caggagcctc tcgaagagtc cctcgcccgt gccgcccgcg agcgagcgga gggcgtgcac
     5581 gacgggcggg actgccaggg cctcggcgcg cgaccatcgc gagagcgcgt cgctcggggt
     5641 cgcccactcg cccgcgtcga actcttcggt cacggggcgc ggctcctgct tgcgcgggca
     5701 gcggacgacg aagaagagcg tgtcgaagcg gcgcgggcta aagggcggcg tcacccagcg
     5761 gccggcgaag cggaagtctg aggcgtcgag gcgcaggccg tagtgtctga gaagctctgc
     5821 gaagctcatg cggcccgagg tcaggtcgtc gagcacggag gcgagctgcc ccttcgtcaa
     5881 agtctccgcg ccgcgggcgg cgagcacgcc cacctcctca aacagctcgc gcgcggcgca
     5941 cgccgtcatc ctcgccgtct cggcgtcggc ggccccggcg acttccacct ccgcgtccga
     6001 ctcgtccaac tgcccgcccg gaaaggcgta gaagccgggc aggtaggcca tgcggctgct
     6061 gcgtcggccc cagaagacga
//
LOCUS       DASPKR010000324         4877 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_948910, whole genome shotgun sequence.
ACCESSION   DASPKR010000324 DASPKR010000000
VERSION     DASPKR010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4877)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4877
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_948910"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..744
                     /locus_tag="VD968_08850"
     CDS             <1..744
                     /locus_tag="VD968_08850"
                     /inference="COORDINATES: protein motif:HMM:NF015995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HYE14532.1"
                     /translation="ERGVRVERRFELGGNLAHDSLVSGRIDFYPEYTGTSFTAILKHA
                     PLTDPRAVYEQVRREYAERFNVEASAPLGFSNDFAILVRGDDARRLVIKTVSEAAAHA
                     PKWRAGFGQDFMSRADGYEGFARAYNLRFAGRPREMDLSLSYRALADGEVDIIAGNST
                     DGMIATLGLFQLEDDRRYFPPYEAVFLSRRDALERLPEARDALTKLAGAISTEEMRRL
                     NYEVDGRKRPAADVVREWLQKSRGGGSGD"
     gene            complement(877..1284)
                     /locus_tag="VD968_08855"
     CDS             complement(877..1284)
                     /locus_tag="VD968_08855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14533.1"
                     /translation="MRKLFFAALIAAATASGALAQEVASNKSANSDSQIPNMGRAPRE
                     QDGVGRLDLRVVDEAGNPVNDAYAFLESRRSNGIECASWNWTDARGVSVLPPIHMGKL
                     KLVLKAKGYQTVKLNIDASSLDQPVRVTMVRKK"
     regulatory      complement(1509..1598)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01051"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-GMP riboswitch class I; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="cyclic di-GMP"
                     /db_xref="RFAM:RF01051"
     gene            1767..2039
                     /locus_tag="VD968_08860"
     CDS             1767..2039
                     /locus_tag="VD968_08860"
                     /inference="COORDINATES: protein motif:HMM:NF016141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HYE14534.1"
                     /translation="MGLIDLLLLLLVAGVCGALGQAISRTSRGGCLVSIALGFIGALI
                     GLWLARNAGLPEPLPVEVAGRTFPVVWSIIGSALFVAVISLVTRSR"
     gene            2217..3950
                     /locus_tag="VD968_08865"
     CDS             2217..3950
                     /locus_tag="VD968_08865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14535.1"
                     /translation="MVATAPTKAVQAYGFGRAARKQSGAADAPDLAHFRRRYPLTVAS
                     LGSLPRREEWLRRIWERDERWREATETRGGEPVVEEVIVRGAPPRASDAEGEFDLIFA
                     GDGAALLDAAVMARQYGRRVLVLDEPEAAFARRDWNLSEDELRELESSGLFTREEIEA
                     AVLNRRRKGLVKFHDAGSRVKAEPLWVEGVLNVCVDGGRLLALAAEKVRAQGRSAVLP
                     GVRLVRAYVEPDRVTAEVEGPGGARRFFRAEVLVCAGSAASKAARQLNGARSLTHVWP
                     TVGTVARGFARGDSADSVDFRLGEILVSTEDARDHRQLVWQSLAGAPARDECATLLFF
                     YDEVGSPADKSLLSLFERYFEALPAYKRTGAAWRVERPVFDHVPAFRPRGRKARPRVS
                     DDRVMLLGVGSSARGPLAFGGSRTAARGLRSRTHLLSLALEAGLTDAGSLARVCDDRP
                     GVAEAAGLAEFMRPTPEGSPSTVNETLNALMKALGELDERVRRELFQGRMSFVALRRL
                     LARTARLYPRIFARVREHFGARGTLWWAAGIAEAVWSERRARAARHGTPAAWDESPGE
                     KFARHAALYRD"
     gene            4146..>4877
                     /gene="queG"
                     /locus_tag="VD968_08870"
     CDS             4146..>4877
                     /gene="queG"
                     /locus_tag="VD968_08870"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HYE14536.1"
                     /translation="MSEPAEEAARRAALTRGIKRRARALGFDEVGVVRADALEEEGAR
                     LREWLARGHHGEMRWMARDTERRTSPSLLLPGARTVVSVALNYYTPHRHTAEPGTGKV
                     SRYAWGDDYHDVLGEKLKALLAWVKEQSPGATGRVCVDAQPTMDKAWAVRAGLGWIGK
                     HTNLITRAHGSWVFLGELVLDIELDYDEARVEDHCGTCTLCIESCPTGAITEPYVVDS
                     RLCISYATIELREPELPPQVSRGLDG"
BASE COUNT          717 a         1661 c         1706 g          793 t
ORIGIN      
        1 gagcgcggcg tgcgggtcga gaggcgcttc gagcttggcg ggaacctcgc gcacgactcg
       61 ctcgtctcgg gccgcataga cttctacccc gagtacacgg gaacgtcctt caccgcgatt
      121 ctcaagcacg cgcccctgac agacccgcgc gccgtctatg agcaggtcag gcgcgagtac
      181 gccgagcgct tcaacgtcga ggcgagcgcg ccgctcggct tcagcaacga cttcgccata
      241 ctcgtccgcg gcgacgacgc gcgccgcctc gtgataaaga ccgtctctga ggccgcggcg
      301 cacgcgccga agtggcgcgc gggcttcggg caggatttca tgtcgcgtgc cgacggctac
      361 gagggcttcg cgcgcgccta caaccttcgg ttcgcgggcc gcccgcgcga gatggatttg
      421 tctctctcct accgcgcgct cgcggacggc gaggttgaca tcatcgccgg caactcgacc
      481 gacggcatga tagccacgct cggcctcttc cagctcgagg acgaccggcg ctacttccct
      541 ccctacgagg ccgtcttcct ctcgcggcgc gacgcgctag agcgtctgcc cgaggcgcgc
      601 gacgcgctca cgaaactcgc cggggctata agcacggaag agatgcgacg gctcaactac
      661 gaggttgacg ggcgcaagcg ccccgccgct gatgtcgtgc gcgagtggct gcaaaagagc
      721 cgcggcggcg gctcaggaga ttagccggga gcgagccgaa ggcgccggcg cgagccccgt
      781 aatgccagcg ataaaaaatt agaaagcccc ggcaggggcg acggaatgac agcgcgtcat
      841 ccgtcgcccc tgccggggct ttctaactgg ctccgactac ttcttgcgaa ccatcgtgac
      901 gcgcacgggc tggtcgagcg agctggcgtc tatgttgagc ttgaccgtct ggtagccctt
      961 ggccttgagc actagcttga gcttgcccat gtgtatgggc ggcagcacgg agacgccccg
     1021 cgcgtccgtc cagttccagg aggcgcactc gataccgttg ctgcggcgcg attcgaggaa
     1081 cgcgtaggcg tcgttgacgg gattgccggc ctcgtcaacg acgcgaaggt cgagtcggcc
     1141 gacgccgtcc tgctcgcgcg gcgcgcggcc catgttggga atctggctgt cgctattggc
     1201 agacttgttc gaggcgactt cctgcgcgag cgcgcccgag gcggtcgcgg cggctatgag
     1261 ggcggcgaaa aacagcttac gcatagacga attctctcct tgaatctctc tcggcacggt
     1321 ctgtgtggga atcaaaggct tcggccgtcg gcccgcgcga cctgaagggg gtgagcgtcg
     1381 ccgcgaagtg acagtctaag atgagtgact tcgcgcgccg gttgcacgcg ccgggggcgg
     1441 aaaggccgcc gcccgcgctg ctcgcacggg ccgacggcct ccctctcgtc aactcttttc
     1501 cgcatcactt cggcggccgc tgcgtccgtg cgcccctcgg gcgtttaggt caacggcttt
     1561 gcgctccggg ctttcgcgcc gggttgcctt tgtcggtgtt gccggcggcc ggcttctgct
     1621 gccgccgccg ccaaaaaatt atagcggccc gccgggccgt ttgggaagga aaagattttc
     1681 ggcccgcgtg tgcgagattt ttttgcgcgg ggggccgtcg ggggtttatg ctctcgggca
     1741 aacgccgacg aaggagaggg tgaaggatgg gcctgattga tctgcttctg ctgcttctgg
     1801 tcgcgggcgt gtgcggcgcc ctgggtcagg ccatcagccg cacctcgcgc ggcggctgcc
     1861 tcgtctcgat agcgctcggc ttcatcggcg cgctcatagg cctgtggctc gcgcgaaacg
     1921 ccggtctgcc agagccgctg cccgtcgagg tggccgggcg caccttccct gtcgtctggt
     1981 caatcatagg ctcggccctc ttcgtcgccg tcatcagcct cgtcacgagg agccgctaaa
     2041 gtttgtgacg gtttctttac cgaaaactaa gaactgacgg ccggcaactc ccgcccccaa
     2101 cctttaccgc ccggcggccg ttcggctaca ctcgcacgca ccggctcccc ggataactaa
     2161 aaatttcgtc gccgtcggcg agcgcgctcg ggcgccgccg cgcaggtcaa ggttttatgg
     2221 tcgccaccgc tccgacgaag gccgtccagg cttacggctt cgggcgcgcc gcccgcaaac
     2281 agtcgggcgc cgcagacgcg cccgacctcg cgcacttccg ccgacgctac ccgctcacgg
     2341 tagcgagcct cggctcgctc ccgcggcgcg aggagtggct gcggcgcata tgggagcggg
     2401 acgagcgctg gcgcgaggcg acggagactc gcggcggcga gcccgtagtc gaggaagtga
     2461 tagtccgcgg cgcgccgccg cgcgcgagcg acgcggaagg cgagttcgac ttaatcttcg
     2521 cgggcgacgg cgccgcgctc ttagacgccg ccgtgatggc ccgccaatac ggcaggcgcg
     2581 tgctcgtgct cgacgaaccc gaagccgcct tcgcccggcg cgactggaac ctatcggaag
     2641 acgagctgcg tgagttggag tcgtccgggc tgttcacgcg cgaggaaatc gaggcggccg
     2701 tcttgaaccg ccgccgcaaa ggtctcgtga agttccacga cgcgggctcg cgcgtgaagg
     2761 ccgagccgct ctgggtcgag ggcgtgctca acgtgtgcgt tgacgggggc cgcctgctcg
     2821 cgctcgccgc ggagaaggtt cgcgcgcagg ggcgctcggc cgtcctgccg ggcgtgaggc
     2881 tggtgcgcgc ctacgtcgag cccgaccgcg tgacggctga agtcgaaggg ccgggcggcg
     2941 cgcgccgctt cttccgcgcg gaggttcttg tgtgcgctgg ctcggccgcc tcgaaggctg
     3001 cgcggcagtt gaacggcgct cgctctctca cgcacgtctg gcccacggtt ggcacggtgg
     3061 cgcgcggctt cgcgcgcggc gacagtgccg actcggttga cttccgtctg ggcgagattc
     3121 tcgtcagcac cgaggacgcg cgcgaccaca ggcagctcgt gtggcagagc ctcgccggcg
     3181 cccccgcgcg cgacgagtgc gccactctcc tcttcttcta cgacgaagtc ggctcgcccg
     3241 ccgacaaatc ccttctctct ctcttcgagc gctacttcga ggcactgccg gcctacaagc
     3301 gcaccggcgc cgcgtggcgc gtcgagcggc ccgtcttcga ccacgtgccg gccttccgcc
     3361 cgcggggccg gaaggctcgg ccgcgtgtct ccgacgaccg cgtgatgctg ctcggcgtcg
     3421 ggtcgagcgc gcgggggcct ctggccttcg gcggctcgcg cacggctgcg cgcggcctgc
     3481 gctcgcgcac gcacctgctg agccttgcgc tcgaagcggg gctgacggac gccggctcgc
     3541 tcgcgcgcgt ctgcgacgac cgccccggcg tcgccgaggc cgcgggcctc gccgagttca
     3601 tgcggcctac gccggagggc tcgccctcga ccgtcaacga gaccctgaac gccttgatga
     3661 aggcgctcgg cgagttggac gagcgcgtgc gccgagagct gttccagggg cgcatgagct
     3721 tcgtagcgct gcggagactg ctggcgcgca ccgcgcgcct ttacccgcgc atattcgcgc
     3781 gcgtgcgcga gcacttcggc gcgcgcggca cgctctggtg ggccgccggg atcgccgagg
     3841 ccgtctggag cgagaggcgc gcgcgcgcgg cacgccacgg cacgcccgcc gcctgggacg
     3901 aaagccccgg agaaaaattc gcgcgccacg cggcgctcta ccgcgattaa aaaagggccg
     3961 gcacgaacat cgtgccggcc ctactgttag ggcttgattg ctttcaaagg ggccgcggga
     4021 agtgattctg cggcgggctt tgcggagcgt gcgtgcaggg taggcgaagc cggggcgggg
     4081 tggcaaaacg gggccggtcg tggggcgcgg gcgcgctctg ctatactttt tgcaggaagt
     4141 tttttatgag tgagccggct gaagaggcgg cccggcgcgc ggcgctgacc cgaggcatca
     4201 agaggcgcgc gcgcgcgctg ggcttcgacg aggtgggcgt cgtgcgcgcc gacgcgctcg
     4261 aagaggaggg cgcgcgcctg cgcgagtggc tcgcgcgggg ccaccacggc gagatgcgct
     4321 ggatggcgcg cgacacggag cgccgcacgt caccttcgct cctcctgccc ggcgcgcgca
     4381 cagtcgtctc ggtcgccctc aactactaca cgccgcaccg gcacacggcc gagcccggca
     4441 caggcaaagt ctcccgctac gcatgggggg acgactacca cgacgtgctc ggcgagaaac
     4501 tgaaggcgct cctcgcgtgg gtgaaagagc agtcgccggg cgctacgggc cgcgtctgcg
     4561 tggacgcgca gcccacgatg gacaaggctt gggccgttcg cgccggtttg ggctggatag
     4621 gcaagcacac gaacctcatc acgcgcgccc acggctcgtg ggtcttcctg ggcgagctgg
     4681 ttttagacat cgagctcgac tacgacgagg cgcgcgtcga agaccactgc ggcacatgca
     4741 cgctctgcat cgagtcctgc ccgacgggcg caataacgga gccttacgtc gttgactctc
     4801 gcctctgcat ctcctacgcc accatcgagc tacgcgagcc ggaactgccc ccgcaggtct
     4861 cccgcggcct cgacggc
//
LOCUS       DASPKR010000325         5025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1208342, whole genome shotgun sequence.
ACCESSION   DASPKR010000325 DASPKR010000000
VERSION     DASPKR010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5025)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5025
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1208342"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..537
                     /locus_tag="VD968_08875"
     CDS             <1..537
                     /locus_tag="VD968_08875"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HYE14537.1"
                     /translation="RAKYPRNCNCDASVRFEVRVPRSGVNIERISTASGDISARDFAG
                     DVKLQTASGEVTVESVSGEISASSASGNVRVKEAAGTVNASTASGDVDVELTRLQGQG
                     DLRFSTASGNVSVRMPSTLDANVSLSTASGSIETNFPLEVRSSEHGPGKSARGRLGSG
                     SRNLRISSASGDVSLKSI"
     gene            complement(605..1078)
                     /locus_tag="VD968_08880"
     CDS             complement(605..1078)
                     /locus_tag="VD968_08880"
                     /inference="COORDINATES: protein motif:HMM:NF017016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HYE14538.1"
                     /translation="MSQRETGAGAPVRVTIFNQTYSLRSASGAEHVRAVARAVDERMQ
                     HIASQLAVHDVAKVAVLTALNIADELQSLRDYYEKEIMTLFPPRPESAPAEDDEGAAA
                     TTPQQQLTEARPEWFDALFEHDDSKAADRMSSQISSRLQRLRQARQGESIVEGDE"
     gene            1344..2471
                     /locus_tag="VD968_08885"
     CDS             1344..2471
                     /locus_tag="VD968_08885"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14539.1"
                     /translation="MFPQILHGLGAAARPLAPTLLLALACLSASAQTTDPAALAYNKA
                     FSGGVELFEAQNYEQAARAFEQAVALNREDADAHYNLAVVYEKLGRAQEAIVEYQRAL
                     RLRPRHARAQMRLCSAMVAVHRGWEALGYCKQAIKLSPADALAYQKFGEAYAGTGQHE
                     AAAEAFRLAARLDPASAEAHYRLGLSRRVLRQYDEALEALGLAARLDPKHRQAPLAVE
                     SLTAELKRLAAEAAGGRDGLPYASLGRALLRLGLYEEAIETFRQGARRAPSDAGLRFN
                     LGLALYGKNLYEQAAEAYREAVRLKPDMVEAQYNLGWVYHLLSKREALARQCRTVRAL
                     DAQLGQRLEALTGSAAPPADKAAAKTAAAAPQPSAAAAAPR"
     gene            complement(2555..3718)
                     /locus_tag="VD968_08890"
     CDS             complement(2555..3718)
                     /locus_tag="VD968_08890"
                     /inference="COORDINATES: protein motif:HMM:NF016104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000009 - alpha-1,6-mannosyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0004376 - glycolipid mannosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006506 - GPI anchor biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyltransferase family protein"
                     /protein_id="HYE14540.1"
                     /translation="MTKRHARGQKHAAAAPAARPGEGAELQIVGLVLAVKALVLLFGA
                     QSFTVNRNLPVPSLYGALALWNNWDAPHYLDIARDGYVDEGVAERWIVFLPLYPWLVR
                     LFALAARDELLAAFFVSSLASVAAALLLYRLAALDDTERVARASVFFMLAFPTAYFLH
                     IGYTESLFLALALGAFLAARRRVWWAAGVLGALASLTRLNGLLLVPALAFEALAEYRE
                     SGRRFRREWLWVGFAALGFVCYLGINLKVQGHPFAFMEMQERHWQKTLAWPWAGVVST
                     LGNTLRRQPSEAQMVGWQELFFLALGLGCTAWCWLRWRTSYAVWMSLNWLLFASTKFL
                     LSVPRYTLVMFPVYVIFARAAAARPAWGWVITVWSLLFMALFITRFVQGFWAF"
     gene            complement(3725..>5025)
                     /locus_tag="VD968_08895"
     CDS             complement(3725..>5025)
                     /locus_tag="VD968_08895"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HYE14541.1"
                     /translation="HLLTWQDGNVSVREWWDVSFDEIEEGRGEDWWRERLLETLDRAV
                     GMEMVSDVPLGSFLSGGVDSSVVTALMAKQAGGRRVSTYTIGIEAEDLRFDIIPDDTR
                     WARRVGRLLDADYHETMLRPDVASLLPMLVRHMEMPVIDMAISSYLVSKQARETLTVM
                     LSGMGGDEVFAGYPRQLAMQLARALSEPVPSLVRRPLMRAIAGALPGGRPGRLTAPLR
                     NAKKFARSAALSFEERYLGFGTYFTDEAKRRLYSDEMREATRGLDPYEQHRRYFARAS
                     RAAPLNQLLYVDMKTFLPCLNLAYTDKTSMAATLEVRVPLLNREVVELAARMPPALKL
                     RGLKRKYILKRAAESLLPREVVWRKKAGFGAPVRAWLRGPLRPLVDELLSEDAVARRG
                     LFRPREVRRVVEENLSGREDYGLHVLQLLTLEMWHREFID"
BASE COUNT          854 a         1766 c         1671 g          734 t
ORIGIN      
        1 cgcgccaagt acccgcgcaa ctgcaactgc gacgcgagcg tccgcttcga ggtcagggtt
       61 ccccgctcgg gcgtgaacat cgagaggatt tccaccgcga gcggcgacat ctcggcgcgc
      121 gacttcgcgg gcgacgttaa gctacagacg gcgagcggcg aggtgacggt cgagagcgtc
      181 tcgggcgaga taagcgcttc gagcgcgagc ggcaacgtca gagttaaaga ggccgccggg
      241 actgtcaacg ccagcaccgc cagcggcgac gttgacgtcg agctaacgcg ccttcagggg
      301 cagggcgacc tgcgcttctc gacggcgagc ggcaacgtct cggtgcgcat gccctcgacg
      361 ctcgacgcca acgtgagcct ctcgacggcc tccggctcca tcgagaccaa cttcccgctc
      421 gaagtaagga gcagcgagca cggccccggc aagtccgccc gcggccgcct cggctccggc
      481 tcccgcaacc tccgcatctc ctccgcctct ggcgacgtga gcctaaagag catctgaaaa
      541 gaaggggcta gagatcaggg gccagtcagg agtgcgactt cctgactggc ccctggcctc
      601 ttctttactc gtcgccttcg acgattgact cgccctggcg ggcctgcctg agcctctgta
      661 ggcgcgagga gatttggctg ctcatgcggt cggccgcctt cgagtcgtcg tgctcgaaga
      721 gggcgtcgaa ccactcgggg cgcgcttccg tgagctgctg ctgcggcgtc gtggcggctg
      781 cgccttcgtc atcttcggcc ggcgcgctct ccggccgcgg cgggaagagc gtcattatct
      841 ccttctcgta gtagtcgcgc aggctctgca actcgtcggc gatgttgagc gcggtgagga
      901 cggccacctt cgcaacgtcg tggactgcga gctgcgaggc tatgtgctgc atgcgctcgt
      961 ccacggcgcg ggcgacggcg cggacgtgct cggccccgct cgcggagcgc aggctgtagg
     1021 tctggttgaa tatcgtcacc ctgacgggcg cgcccgcccc tgtctctctc tggctcatcc
     1081 tgttttcacc gcctgcctcc gttattgact tgcaaagctc ggcgacaaaa ttaacaccat
     1141 tccgcccgat tgcagagcgc cggagggccg gggcggctct tccgtcaatc ccggtttgac
     1201 tcgccgcggc cccgcgtcct agaattcgtc gccgccgcac agaagccgac gcggcgccca
     1261 cgctgacgct cgccggaacc tcccgcaagg aacccaaccg agtgttcgcc cctttgattc
     1321 aacggaaaca gtaagccaag acgatgttcc cccaaatcct ccacggtctc ggtgccgccg
     1381 cgcggccgct cgccccgacg ctcctgctcg cgctcgcgtg cctctcggcc tccgcgcaga
     1441 cgacagaccc cgccgcgctc gcctacaaca aggcattcag cggcggcgtc gagctgttcg
     1501 aggcgcagaa ctacgagcag gcggcgcgcg ccttcgagca ggccgtcgcg ctcaaccgcg
     1561 aggacgccga cgcccactac aacctcgccg tcgtctatga aaagctcggg cgcgcgcagg
     1621 aggcgatagt cgagtaccag cgcgcgctgc ggctgcggcc gcgccacgcg agggcgcaga
     1681 tgcgcctgtg ctcggcgatg gtcgcggtgc accgcggctg ggaggcgctc ggctactgca
     1741 agcaggccat aaagctttcg cccgcggacg cgctcgccta ccagaagttc ggcgaggcct
     1801 acgccggcac gggccagcac gaggcggcgg ccgaagcctt caggctcgcc gcgcgcctag
     1861 accccgcctc ggccgaagcg cactaccggc tcggcctctc gcgccgcgtg ctccgccagt
     1921 acgacgaggc tctcgaagcc ttggggctcg ccgcgcgcct cgacccgaag cacaggcagg
     1981 cgcccctggc cgtcgagtcg ctcacggccg agctgaagcg cctcgccgcg gaggcggccg
     2041 gcggccgcga cgggctgcct tacgcgagcc tggggcgggc gctcctgcgg ctcggcctct
     2101 acgaagaggc catcgagacc ttcaggcagg gcgcccgccg cgcgccctcg gacgcagggc
     2161 tccgcttcaa tctcggcctt gccctctacg gcaagaacct ctacgagcag gcggccgagg
     2221 cgtaccgcga ggccgtgcgg ctcaagcccg acatggtcga ggcgcagtac aacctcggct
     2281 gggtctatca cctgctctcg aagagggagg cgctggcccg ccagtgccgc acagtacgcg
     2341 cgctagacgc gcagctcggc cagcgcctcg aagccctgac cggctccgct gcgccgcccg
     2401 cggacaaggc ggccgccaag accgccgcgg ccgcgcccca gccttccgcc gccgctgccg
     2461 ccccgcgtta agtcgcgcgg gtttgaaggg gacgagagaa cggcccactg actcggacga
     2521 gtcagtgggc cgttctcttt gcccgccggt cttttcagaa cgcccagaac ccctgcacga
     2581 agcgcgtgat gaagagcgcc atgaagagga gcgaccagac ggttatcacc cagccccagg
     2641 cgggacgggc cgcggccgcg cgcgcgaaga tcacatagac ggggaacatc actagcgtgt
     2701 agcgcggcac gctcagcaaa aacttcgtgc tcgcgaacag aagccagttc aagctcatcc
     2761 agaccgcgta agaagttctc cacctcagcc agcaccacgc cgtgcagccc aggcccaggg
     2821 cgaggaagaa gagctcctgc cagccgacca tctgcgcctc ggaaggctgc cgccgcaacg
     2881 tgttcccgag cgtgctcacc accccggccc acggccacgc cagagtcttc tgccagtgcc
     2941 gctcctgcat ctccatgaag gcgaaagggt ggccttgaac cttcaggtta atgccgaggt
     3001 aacagacgaa ccccagcgcg gcgaaaccga cccagagcca ctcgcgccgg aagcggcggc
     3061 cgctttcgcg gtactccgcg agcgcctcga aggcgagggc ggggacgagc agcaggccgt
     3121 tcaggcgcgt gagggacgcg agcgcgccta agactccggc cgcccaccac acgcgcctgc
     3181 gcgccgccag aaaagcgccg agcgcgagcg cgaggaagag gctctcggtg tagcctatgt
     3241 ggaggaagta cgcggtcggg aaggcgagca tgaagaagac gctcgctcgc gcgacgcgct
     3301 ccgtatcgtc gagcgcggcg aggcggtaaa gcagtagcgc cgccgcgacc gaggcgagcg
     3361 aggagacgaa gaaggcggcg agcagctcgt cgcgcgccgc taaggcgaac aggcgcacga
     3421 gccacgggta gagcggcagg aagactatcc agcgctcggc cacgccctcg tccacgtagc
     3481 cgtcgcgcgc tatgtcgagg tagtgcggcg cgtcccagtt gttccagagc gcgagcgccc
     3541 cgtagagcga aggcaccggc aaatttctgt tcaccgtgaa cgactgcgcg ccgaacaaaa
     3601 gcacgagcgc cttgacggcg aggacgagcc cgacgatttg aagctccgcg ccctcgcccg
     3661 ggcgcgcggc cggggccgcc gcggcgtgct tctgccctcg cgcgtgcctc ttcgtcatct
     3721 tcgctcagtc aatgaactcg cggtgccaca tctccagagt caggagctgg aggacgtgaa
     3781 ggccgtagtc ctcgcggcca gataggttct cttcgacgac gcggcggact tcccgcgggc
     3841 ggaagaggcc gcggcgcgcg accgcatctt ccgagagcag ttcgtcaacg agcggccgca
     3901 gggggcctcg cagccacgcg cgcaccggcg ccccgaagcc ggccttcttt ctccacacta
     3961 cctcgcgcgg caggagcgac tcggccgcgc gcttcagaat gtacttgcgc ttgaggccgc
     4021 gcagcttaag cgctggcggc atcctcgccg caagctcaac cacctcccgg ttgagcagcg
     4081 gcacgcgaac ttcgagcgtc gccgccatag aggtcttgtc cgtgtaggcg aggttcaggc
     4141 acggcaggaa cgtcttcatg tcaacgtaga gcagttggtt gagcggcgcg gcgcgcgagg
     4201 cccgcgcgaa gtagcgccgg tgttgctcgt aggggtctaa gccgcgcgtc gcctcgcgca
     4261 tctcgtccga gtagagccgc cgcttcgcct cgtcggtgaa gtatgtgccg aaacccaggt
     4321 agcgctcctc gaaggagagg gccgcgcttc gggcgaactt cttggcgttg cggagcggcg
     4381 ccgtcagacg gccgggccgc ccgcccggaa gcgccccggc gattgcgcgc atcagagggc
     4441 gacgcacgag cgaaggcacg ggctccgaga gtgcgcgcgc gagctgcatg gcgagctgtc
     4501 gcgggtagcc ggcgaagacc tcgtcgccgc ccatccctga gagcatcacc gtaagggtct
     4561 cgcgcgcttg cttcgagacg aggtaggagg agatagccat gtctatcacg ggcatctcca
     4621 tgtggcggac gagcatgggg aggagcgaag ccacgtcggg ccgaagcatc gtctcgtggt
     4681 agtcggcgtc gaggaggcgg cccacccgcc gcgcccagcg cgtgtcgtcg gggattatgt
     4741 cgaagcgaag gtcttccgcc tcgatgccga ttgtgtaggt cgagacgcgg cggcccccgg
     4801 cctgctttgc catcaacgcc gtcacgaccg acgagtcaac gccgcccgag aggaacgagc
     4861 ctagcggcac gtccgacacc atctccatcc cgacggcgcg gtcgagagtt tccagcagac
     4921 gctcgcgcca ccagtcctcg cccctccctt cttcgatctc gtcgaaggaa acgtcccacc
     4981 attcgcgcac gctcacattc ccgtcctgcc acgtgagcag gtgcg
//
LOCUS       DASPKR010000326         2591 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_301646, whole genome shotgun sequence.
ACCESSION   DASPKR010000326 DASPKR010000000
VERSION     DASPKR010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2591)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2591
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301646"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..1431)
                     /gene="chrA"
                     /locus_tag="VD968_08900"
     CDS             complement(64..1431)
                     /gene="chrA"
                     /locus_tag="VD968_08900"
                     /inference="COORDINATES: protein motif:HMM:TIGR00937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate efflux transporter"
                     /protein_id="HYE14542.1"
                     /translation="MSPEMKTERRDVSFAEALRFWVKLGWVSFGGPAGQIAIMHRELV
                     ERRRWLSEERFLHALNYCMMLPGPEAQQLAIYIGWLMHRTWGGIVAGAFFVIPSVFVL
                     LLLSYVYAAYGNTPFVSGLLSGFKPVVVAIVVEAVLKIGGRALRRRAHFLIAAASFVS
                     IYFLGVPFPLIVLAAGLLGLAGARLWPEAFASEHPKTPKQGAANEGTVVAAPLPLVID
                     DHAPPPAHTLPSASRAVKILAAGLALWLLPLAALLAWGGRGGLHAEEYFFFTKAALVT
                     FGGAYAVLAYVTQAVTAAPYNWLAPAQAVDGLALAETTPGPLIMVLQFVGFMAAWNHP
                     PDGVAREASAVLGALVTTWVTFLPCFVFILVGAPYVEVIRGNRNLNGALTGVTAAVVG
                     VILNLALVFGAAVVWPQGLAGGTDRLALTLSAAAFLALYSLKLDVLWVVLAGGAVGLV
                     AGLLA"
     gene            complement(1409..2554)
                     /locus_tag="VD968_08905"
     CDS             complement(1409..2554)
                     /locus_tag="VD968_08905"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HYE14543.1"
                     /translation="MTAPKEEPRISALLAERIEAGDFPSAVYLVAEGGRARFAGAHGD
                     AVREPERRPATLETIYDLASLTKPLVTGLLAAILFERGAFELDEAVAGRLPELDRDGM
                     RGVTVRQLLTHTSGLPAWLPLYALAGGDRGRVLEVIASQPDAYEPGSRVVYSDLGFIT
                     LGLFLQEVAGAPLDEMARREIFAPLGLRRTFFNPEESFRTEVAACESGGNAYEREVCA
                     SEHGIERGGGWRTETIWGQVHDGNAFFLGGAAGHAGLFSTARETLLIASQFLASTTGL
                     LSEKTCALFRENMTEGLNEARSFAWQLAATPESTAGPLLPPEAFGHLGFTGTSCWLEP
                     ARGRVFILLTNRTHARTPPFVNINGTRRRFHTLAVEALGRDEPGNED"
BASE COUNT          444 a          837 c          977 g          333 t
ORIGIN      
        1 cgcggggagg cagcaaccgc cgcgctcaat agtacaataa tttcgcccgc ccgcagcgct
       61 tgattaagcc agcagcccgg cgacgagccc gacggcgccg cccgcgagga cgacccagag
      121 cacgtcgagc ttcaggctgt agagggcgag gaaggcggct gcgctcaagg tgagcgcgag
      181 ccggtcagtg ccgcccgcga ggccctgggg ccagacgacc gcggcgccga agacgagcgc
      241 gaggtttagg atgacgccca cgacggccgc cgtcactccc gtcagcgcgc cgttcaagtt
      301 ccggttgccg cgtatgactt cgacgtaggg cgcgccgacg aggatgaaga cgaagcaggg
      361 caggaacgtc acccacgtcg tgaccaaagc gccgagaact gcgctcgcct cgcgcgctac
      421 accgtcgggc gggtggttcc aggcggccat gaagcccacg aactgcaaga ccattatgag
      481 cggccccggc gtcgtctcgg ccagcgcgag gccgtccacg gcctgcgcgg gcgcgagcca
      541 gttgtagggc gccgccgtca cggcctgagt gacgtaagcg agcacggcgt aggcgccgcc
      601 gaacgtcacc agcgcggcct tcgtgaagaa gaaatattcc tcggcgtgga gccctccgcg
      661 gccgccccac gcgagcagcg ccgcgagcgg cagaagccag agcgcgaggc cggcggcgag
      721 gattttgacg gcgcgcgagg cggaggggag cgtgtgcgcg ggcggcggcg cgtggtcgtc
      781 aatgacgagc gggagcgggg ccgcaacgac agtcccttcg tttgcggcgc cctgcttcgg
      841 ggtcttgggg tgctcggagg cgaaggcttc cggccagagc cgcgcgcccg cgagcccgag
      901 caggccggcg gcgagaacga tgagggggaa ggggacgccg aggaagtaga tcgagacgaa
      961 agaggcggcg gcgatgagga agtgcgctcg gcggcggagg gcgcggccgc cgattttcag
     1021 cacggcctcg acgacgatgg cgacgaccac gggcttgaag cccgagagca gccccgagac
     1081 gaatggggtg ttgccgtagg ccgcgtaaac gtaggagagc agcagaagga cgaaaacgga
     1141 agggatgacg aagaacgcgc cggcgacgat accgccccag gtgcggtgca taagccagcc
     1201 gatgtagatg gcgagttgct gcgcctcggg gccgggcagc atcatgcagt agttgagcgc
     1261 gtgcaggaag cgctcttccg agagccagcg gcggcgctcg accagctcgc ggtgcatgat
     1321 ggcgatctgc ccggccgggc ctccgaacga aacccagccg agcttcaccc agaagcgcag
     1381 cgcctcggcg aacgagacgt cgcgccgctc agtcttcatt tccgggctca tcacgtccga
     1441 gcgcctcgac cgcgagcgtg tggaaccggc ggcgcgtgcc gttgatgttg acgaagggcg
     1501 gcgtgcgcgc gtgcgtgcgg ttcgtaagta ggatgaagac gcgcccgcgc gcgggctcga
     1561 gccagcagct tgtccccgtg aagccgaggt ggccgaaggc ttcgggcggg agcagcgggc
     1621 cggccgtgga ctcgggcgtc gcggcgagct gccacgcgaa cgagcgcgcc tcgttgaggc
     1681 cctcggtcat gttctcgcgg aagagggcac aggttttttc ggacagcagc cccgtcgtcg
     1741 aggcgaggaa ctgcgaggct atcagaagcg tctctcgcgc ggtcgagaag aggccggcgt
     1801 ggcccgcggc gccgccgagg aagaaggcat tgccgtcgtg gacttggccc cagatggtct
     1861 cggtgcgcca gccgcccccc ctctcgatgc cgtgctcgct cgcgcagacc tcgcgctcgt
     1921 atgcgttccc gcccgactcg cacgcggcca cctcggtgcg gaaactctcc tccgggttga
     1981 agaaggtgcg ccggaggccg agcggggcga agatttcgcg gcgcgccatc tcgtcgagcg
     2041 gcgcgcccgc gacctcttga agaaagaggc cgagagtgat gaagccgagg tcgctataga
     2101 cgacgcgcga gccgggctcg taagcgtcgg gctgcgatgc gatgacttcg agcacgcggc
     2161 cgcggtcgcc gccggccagc gcgtagagcg ggagccacgc gggcagcccc gacgtgtgcg
     2221 tgagcaactg ccggacagtc acgccccgca tgccgtctcg gtcgagctcg ggcaggcggc
     2281 ccgcaaccgc ctcgtccagc tcgaaagcgc cgcgctcaaa cagaatcgcg gccagcagcc
     2341 ccgtcacgag cggcttcgtg agcgacgcga ggtcgtagat ggtctcgagc gtcgcgggcc
     2401 gtctttcagg ctcgcgcacg gcgtcgccgt gcgcgcccgc gaagcgcgca cgcccgccct
     2461 cggcgacgag atagacggcc gaggggaagt cgccggcctc gatgcgctcg gcgagcaggg
     2521 cggagattcg cggctcttct ttcggggcgg tcatgggtcg gcgctttagc cttgcgcgcg
     2581 gagggcggag a
//
LOCUS       DASPKR010000327         2988 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1336935, whole genome shotgun sequence.
ACCESSION   DASPKR010000327 DASPKR010000000
VERSION     DASPKR010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1336935"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..595
                     /locus_tag="VD968_08910"
     CDS             <1..595
                     /locus_tag="VD968_08910"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HYE14544.1"
                     /translation="EGGQGLSRLPFSRREAEMIAALAPAGQARRALDFEASRRLATSG
                     ELADYRFVHFATHGILNGEHPELSGVVLSLIDERGRPVDGFLRLNEIYNLRLPAELVV
                     LSACQTALGREVRGEGFLGLVRGFMYAGSPRVVASLWKVDDRATAELMRRFYEGMLGQ
                     GLRPAAALRRAKVEMLKEQRWHAPFHWAAFELQGEWK"
     gene            632..1252
                     /locus_tag="VD968_08915"
     CDS             632..1252
                     /locus_tag="VD968_08915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14545.1"
                     /translation="MEVSLARKGDWELTGEAFERLLRLLDSDRERAGEKYELARRRLI
                     AFFEARGAESPADHADETLNRAARKVAEGERVEDIGKYLYGVARLLLLELGRAREKGP
                     LPLDAMAPPAARAADEHDEEEEQRRAEHERRFECFERCLRQLTPESRAFIVSYYKEER
                     GEKIRGRKRQAREMGVSLNALRLRASRIRAALDRCIGECLGGAEEK"
     gene            1327..2337
                     /locus_tag="VD968_08920"
     CDS             1327..2337
                     /locus_tag="VD968_08920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14546.1"
                     /translation="MKGTTERDEKFTRYLLGDLPEEERVRLEEEYFIDAAAFAGLVAA
                     RDELTDLYARGELKDRARERFEQHFLSTEPRRRRAREAKELIEFSTRVAATEATAERA
                     RGVRWWPPFLAARSPALRLTFASLLICVAIAGAWLLSRRAGTGPAERAAVAPSPGVEI
                     ARRTQPGGEPQTRPGDDGQGSVADAPMPPAATPDPRRAQSAGTASGRASGRPPAQKRE
                     AAHVASILLTPVLTRDAGQPSTLHVRPDTAAARLQLSFRGGDYRRYVVVLRTVEGEQV
                     WRGPAAAARASGGGNTAVARVPARVFRRKDHTATLYGVTAQGESHELSEYFFTVSRGV
                     SQ"
     gene            2508..>2988
                     /locus_tag="VD968_08925"
     CDS             2508..>2988
                     /locus_tag="VD968_08925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14547.1"
                     /translation="MSKAKSLGREEVVVEDRAISSWLAFAAPIILLVAGYFVKSSWGA
                     VTGAERPIIDDSKVLNFIVGLVILGASLFFCLCSVLLLVGALWKTRMKFYERGVTLHG
                     HGVSGPRSQFLYGEVEGVRITEKHNMVSTPRRNNRDLLEIALDALAGTKPAPRPTVYE
                     "
BASE COUNT          498 a          991 c         1055 g          444 t
ORIGIN      
        1 cgaagggggg cagggcttgt cgaggctgcc attctcacgc cgcgaggccg agatgatcgc
       61 cgccctcgcc cccgccgggc aggcgcgcag ggcgctcgac ttcgaggcca gccggaggct
      121 cgccacgagc ggcgaactcg cagactaccg cttcgtgcat ttcgccacgc acggaatttt
      181 gaacggcgag caccccgagt tgtccggcgt cgtgctctcg ctcattgacg agcgcggccg
      241 tcccgttgac ggcttcctgc gtctcaacga aatctacaac ctgcggctcc ccgccgagct
      301 ggtcgtcctg agcgcgtgcc agaccgcgct ggggcgggag gtgcgtggcg aagggttcct
      361 cggactcgtg cgcggcttca tgtacgccgg gagcccgcgc gtcgtggcga gcctctggaa
      421 ggtggacgac cgcgcgaccg ccgagctgat gcgccgcttc tacgagggga tgctggggca
      481 gggcctgcgg ccggcggcgg cgctcaggcg cgccaaggtc gagatgctga aggagcagcg
      541 ctggcacgcg cccttccact gggcggcgtt cgagcttcag ggcgagtgga agtaggaggg
      601 cgaatctgaa tcgcgcaagg ggcgggggca ggtggaagtt tcactcgcgc gtaaaggtga
      661 ttgggagctg acgggggaag ccttcgagcg gctactccgg ctgctggact ccgaccgcga
      721 gcgcgcgggc gagaagtacg aactcgcccg ccgcaggctg atcgccttct tcgaggcgcg
      781 cggtgccgag tcgcccgccg accacgcgga cgagaccctc aaccgcgccg cccgcaaggt
      841 cgcggaaggc gaacgggtcg aggacatagg caagtacctc tacggcgtgg cgcgcctgct
      901 gctcctggaa ctcgggcgcg cgcgggagaa gggcccgctg ccgctcgacg ccatggcgcc
      961 gcccgccgcc cgcgccgccg atgagcacga cgaggaggag gagcagaggc gggcggagca
     1021 cgaacgccgc ttcgagtgtt tcgagcggtg cctgcgccaa ctcacgcccg agagccgcgc
     1081 cttcatcgtc tcttactaca aagaggagag gggcgagaag atcagggggc ggaagcgtca
     1141 ggccagagag atgggtgtct ccctcaacgc cctgcgcctg cgcgcctcgc gcatacgcgc
     1201 ggcgctcgac cgctgcatcg gcgagtgcct ggggggcgcg gaggagaaat gaaatcctct
     1261 tccggtcact gtaaggtgta gggcgatgaa agaggctggt gaaggcggtc ggggagaatc
     1321 agcagcttga aaggcacgac ggagagggac gagaagttca cgcgctacct tctgggcgac
     1381 ctgcccgagg aggagcgcgt gcgcctcgaa gaggagtatt tcatcgacgc cgccgccttc
     1441 gcgggcctcg ttgccgcaag ggacgaactc acagacctct acgcgcgcgg cgagctgaag
     1501 gaccgcgcac gcgagcgctt cgagcagcac ttcctctcca ccgagccgcg ccgacgcagg
     1561 gcgcgcgagg caaaggagct gatcgaattc tccacgaggg tcgccgcaac ggaagcgacg
     1621 gccgagcgcg cgcgcggcgt ccgatggtgg ccgccttttc tcgccgcgcg gtcgccggcc
     1681 ctgcggctca cgttcgcctc cctcctgatt tgcgtcgcca ttgccggcgc gtggctgctc
     1741 tccaggcgtg cgggaacggg gccggcggag cgtgccgccg tcgccccttc tcccggtgtg
     1801 gagatcgccc ggcgaactca gccgggcggc gaacctcaaa cacggcccgg agacgacggg
     1861 cagggcagcg tggcggacgc gccaatgcct cccgccgcga ctcccgaccc gcgccgcgcg
     1921 caaagtgcgg gcacggcgtc agggcgcgcg tcggggcggc cgcccgcgca gaagcgcgag
     1981 gcggcgcacg tcgcctcgat cctcctgacg ccggtgctca cgcgtgacgc cggacagccg
     2041 agcacgctgc acgtccggcc cgacacggcc gcggcgcgcc tgcaactgtc gttcaggggt
     2101 ggcgactacc gccgctacgt agtcgtcctg cggacggtcg aaggcgagca ggtgtggcga
     2161 ggcccagcgg ccgcggcgcg ggcgtcgggc gggggcaaca ccgcggtcgc ccgcgtcccg
     2221 gcacgggtct tccgcaggaa ggaccacacc gcgacgcttt acggcgtgac ggctcaggga
     2281 gagtcgcacg agctcagcga atacttcttc accgtgagta ggggtgtaag ccagtaacct
     2341 cgccttcaac tcccgccctt cgcacacgtc gccccgaccc gcctctccca agtcgaacct
     2401 gaaaagcagc catatcctca accggttcgg cggacacatt ttttcgcgcg cgtcactaaa
     2461 aggtgtaggg cggcctcgcg aagtggccgg cctgccccgg gactcccatg tcgaaagcaa
     2521 agtcacttgg cagagaggag gtcgtcgtcg aggacagggc gatctcctcc tggctggcgt
     2581 tcgcggcacc gatcatcctc cttgtcgcgg gatacttcgt gaaaagctcc tggggcgcgg
     2641 ttacgggggc ggaacgtccg atcattgatg actcgaaggt tcttaacttc attgtcggcc
     2701 tggtcatcct gggcgcgagc ctgttcttct gcctctgctc cgtgctctta ctggtcgggg
     2761 cgctgtggaa gacgaggatg aaattttacg agcgcggggt cacgctccac ggccacgggg
     2821 tttctgggcc aaggtcacaa ttcctgtacg gcgaagtcga gggcgtccgc atcaccgaaa
     2881 aacacaacat ggtttccacc ccgcgccgga acaaccgcga cctgctcgaa atcgcccttg
     2941 acgcgctcgc ggggacgaag cccgcaccgc gtcccacagt ttacgaga
//
LOCUS       DASPKR010000328         5758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_561685, whole genome shotgun sequence.
ACCESSION   DASPKR010000328 DASPKR010000000
VERSION     DASPKR010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5758)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5758
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_561685"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..303
                     /locus_tag="VD968_08930"
     CDS             <1..303
                     /locus_tag="VD968_08930"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: protein motif:HMM:NF014499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HYE14548.1"
                     /translation="ARSAESADEGMKRERENCLKYLGSDGSEIHWDFIRAVQMSVAAL
                     SVIQLQDLLGLGSDARMNTPASPEGNWAWRFRAGALTDELAKRLRGMTALYGRLND"
     gene            427..1491
                     /locus_tag="VD968_08935"
     CDS             427..1491
                     /locus_tag="VD968_08935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14549.1"
                     /translation="MKRTALVVCILLATALVAAAGQRRRPRISGPERTQPATTTQPAT
                     IPTPAQPTTPSTGTTQPASGQQTYKPAIEFQSFMQLRFYENQGNFLVEDLEVVFPPAG
                     SRKATFVITRGNGAAVASVPLRLETPLATYTMFGMYKPDGVPGNANIGEPGDYVLSVQ
                     IDGRPVTTLPFSMKRESSNDPFNPKNTFVREGPWRDLAYFSDRTEQPGSNIQFNWWTS
                     LRELPAGTPQRPLVTLHILHGAQEIAATRSPVVVSQTDWQFFNQELEVLGAKPARWMT
                     LADLTKKDGEYTVVAKVNGKPFKTYRAEVRGGQLQRHPRNALGYEPQTDFISPRMVDT
                     SAGTTSRYVMRDTYWVVKKN"
     gene            complement(1515..3971)
                     /gene="glgX"
                     /locus_tag="VD968_08940"
     CDS             complement(1515..3971)
                     /gene="glgX"
                     /locus_tag="VD968_08940"
                     /inference="COORDINATES: protein motif:HMM:TIGR02100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004133 - glycogen debranching enzyme
                     activity [Evidence IEA];
                     GO_process: GO:0005980 - glycogen catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HYE14550.1"
                     /translation="MKIWPGQPYPLGATWDGAGVNFALFSENASAVELCLFDSEGAEA
                     ERVRLAEQTDQVWHAYLPEVRPGQLYGYRAHGPYEPRAGHRFNPNKLLLDPYAKSIAG
                     TVSWDDAVFGYTIGSEAGDLSFDERDSARNVPKCVVVDPAFSWGGDAPPRTPWHKTII
                     YELHVKGFTKLHPEVPEQLRGTYAGLAHPSVVDYLLKLGVTAVELMPVHHFVSDKFIQ
                     DRGLTNYWGYNSIGFFAPDVRYSSSGATGEQVSEFKTMVKTLHRAGLEVILDVVYNHT
                     GEGNHLGPTLCFRGIDNAAYYRLVPGQPRYYMDYTGCGNTLNMTHPRTLQLIMDSLRY
                     WVLEMHVDGFRFDLASALARELHEVDRLGAFFDIIHQDPVLSQVKLIAEPWDLGEGGY
                     QVGNFPVLWAEWNGIYRDSVRKFWRGDPGQVDDMAFRLTGSSDLYERSGRRPYASINF
                     VTAHDGFTLADLVSYNEKHNEENREGNRDGHNDNLSWNHGVEGPTDDPEILASRARQM
                     RNFLATLLLSQGVPMLVAGDETARTQSGNNNAWCQDNEVSWLDWNLTDARRELLEFTR
                     EVIRIFHHHPVLRRRKFFQGRPVRGAEIKDVSWFRPDGEEMTEADWKNAQLRSLGVRL
                     AGDAIDEVDERGERITGDTLFIILNAHHRAVSFVVPPAHRRGVNWEQVIDTREGHGRR
                     KTRRLIRGGTTYRAEARSLALFRLPADSARDQEETPEAPPPEETSTAPTTGPGGPVTE
                     SVYCERAGTIVPLDETGFCRACSQHVTEDDGVHSAPTPEMLGQLDYATTPVPDTEAQG
                     EGPSDVESRGGGEEGEEGGR"
     gene            complement(3986..>5758)
                     /gene="treZ"
                     /locus_tag="VD968_08945"
     CDS             complement(3986..>5758)
                     /gene="treZ"
                     /locus_tag="VD968_08945"
                     /inference="COORDINATES: protein motif:HMM:TIGR02402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malto-oligosyltrehalose trehalohydrolase"
                     /protein_id="HYE14551.1"
                     /translation="GDAPQTVSMGRGEDDIFEAFVPGVGAGAGAGYFYLLDGERERPD
                     PVSRSQPAGVHGPSRVVDSEEFKWTDEGWRGVALKDYVIYELHTGTFTPEGTFEAIIP
                     KLAHLKALGVTAVELMPVAEFPGGRNWGYDGAHLYAPQSTYGGPEGLKRLIDACHREG
                     LAFVLDVVYNHLGPEGNYLGEYMPVFSKTYRSPWGDALNFDGEGSDGVRRHFVSNALY
                     WLDEYHVDALRLDAVHTIFDSGPVHVLAELAARFSARARELGRRAYTIAESDLNDVRV
                     IAPARACGWGLDAQWSDDFHHSLHALLTRTERGYFSDFGRLEDLAKAISAGFVYDGRH
                     SAFRRRRHGTDSSERPGEQFVVCAQNHDQIANGYWGDRLSRLLNLEQQKLAAAILLCG
                     APNVPLLFMGQEWSERAPFLYFTSHTDEGLGRAVREGRQEEYASFVRAEGETESNVGG
                     FADPQDEITFARSKLDWSLLEKPPHSEVLRFYRDLLAARGRHAALSNCDKARTRVSFD
                     EARRWLTVERGDAEGPPALLSCNLSPEPQQVPPPGGAWELILWSGAPEYGGPPQHEAP
                     PRQIRETGGGVRLEAWGAALYAKP"
BASE COUNT          912 a         1892 c         2003 g          951 t
ORIGIN      
        1 gcgcgctcgg ccgaatcggc ggacgagggg atgaagcggg agcgcgagaa ctgtttgaag
       61 tacctcggga gcgacggctc cgagattcac tgggacttca tacgcgccgt gcagatgtcc
      121 gtggccgcgc tctcagtcat acaactgcaa gacctgctgg ggctcggctc agacgcgcgc
      181 atgaacacgc ccgccagccc cgaaggcaac tgggcatggc gcttccgcgc aggcgccctt
      241 acagacgaac tggcgaaacg cctccgcggc atgacggccc tttacggcag gctgaacgat
      301 taggcgcggc cagcccgcaa acatcgccct tgattcgcgg ggcgcgcgtg taagatactc
      361 cgggccgttc ggcctacgcc tcgccgcgtc aaacccgtca gcctttcgag agtggagttc
      421 gagcgcatga aaagaacagc ccttgtagtc tgcatactcc tcgcgacggc gctcgtcgca
      481 gcggcgggcc agaggcgcag gccgaggata tccggccccg agcgcacaca accggcgacc
      541 accactcagc cggcgacgat cccgacgccg gcgcagccga cgacgccgag cacggggaca
      601 acacaaccgg cctcgggcca gcagacctac aagccggcga tagagttcca gtcgttcatg
      661 cagctccgct tctacgagaa ccagggcaac ttccttgtcg aagacctgga agtcgtcttc
      721 ccgcccgcgg ggtcgcgcaa ggcgaccttc gtcatcacgc gcgggaacgg cgcggccgtg
      781 gcgagcgtcc cgctgcgctt ggagacgccg ctcgccacct acaccatgtt cggcatgtac
      841 aagccggacg gcgtccccgg caacgccaac atcggcgagc ccggcgacta cgtcctgtcc
      901 gtccagatag acggccggcc cgtcacgacg ctccccttct ctatgaagcg cgagtcgagc
      961 aacgacccct tcaacccgaa gaacaccttc gtgcgcgagg ggccgtggcg cgacctcgcg
     1021 tacttctccg accgcacgga gcagcccggc tcgaacatcc agttcaactg gtggacgagc
     1081 ctgcgcgagc ttcccgccgg cacaccgcag aggccgctcg tcacgctcca catactccac
     1141 ggcgcgcagg agatagccgc cacgcgcagc cccgtcgtcg tctcgcagac cgactggcag
     1201 ttcttcaatc aggagcttga ggtattgggc gcgaagccgg cgcgctggat gacgctggca
     1261 gatttgacga agaaggacgg cgagtacacc gtcgtcgcta aggtcaacgg caagcccttc
     1321 aagacgtacc gcgcagaggt gcgaggcggc cagttgcagc gccacccgcg caacgccctc
     1381 ggctacgagc cgcagacgga cttcatctcg ccgcgcatgg ttgacacctc cgccggcacg
     1441 acctcgcgct acgtgatgcg cgacacctac tgggtcgtga agaaaaacta gcgcgcctcc
     1501 gcttgcgagg gcggctaacg gccgccctcc tcaccttcct ccccgccgcc ccgactctcc
     1561 acgtcagacg gcccttcgcc ctgcgcttcg gtgtcgggga cgggtgtcgt ggcgtagtcc
     1621 agctgcccga gcatttcggg cgtgggcgcg ctgtggacgc cgtcgtcttc cgtgacatgc
     1681 tgactgcacg cgcggcagaa gcccgtctcg tctagcggca cgatggtccc cgcgcgctcg
     1741 caatagacag actcggtgac ggggccgccc ggcccggtcg tcggcgcggt cgaagtctct
     1801 tcgggcggcg gggcctccgg cgtctcctcc tggtcgcggg ccgagtcggc gggcaggcgg
     1861 aagagggcga gcgagcgcgc ctctgcgcgg taggtcgtgc cgccgcgtat tagccgccgt
     1921 gtcttgcggc ggccgtggcc ctcgcgcgtg tctatgacct gctcccagtt gacgccgcgg
     1981 cggtgcgccg gggggacgac gaaggagacg gcgcggtggt gcgcgtttag gatgatgaag
     2041 agcgtgtcgc ccgtgatgcg ctcgccccgc tcgtcaacct cgtctatggc gtcgccggcg
     2101 aggcgcacgc cgaggctcct gagctgcgcg ttcttccagt cggcctcggt catctcctcg
     2161 ccgtcgggcc ggaaccagga cacgtccttt atctcagccc cgcgcacggg ccggccctgg
     2221 aagaacttgc ggcggcggag caccgggtgg tggtggaata tgcgtatcac ctcgcgcgtg
     2281 aactcgagga gctcgcggcg cgcgtcggtc aaattccagt cgagccagga gacctcgttg
     2341 tcctggcacc atgcgttgtt gttgccgctc tgcgtgcgcg ccgtctcgtc gcccgcgacg
     2401 agcatcggca cgccctgcga gagcaggagg gtggcgagga agtttcgcat ctggcgggcg
     2461 cgagaggcga gtatctcggg gtcgtcggtc ggcccctcga cgccgtggtt ccagctaagg
     2521 ttgtcgttgt ggccgtcgcg gttgccctcg cggttctcct cgttgtgctt ctcgttgtag
     2581 ctgaccaaat cggcgagcgt gaagccgtcg tgcgcggtga cgaagttgat gctggcgtaa
     2641 ggccgtcggc cgcttcgctc gtagaggtcg ctgctgcccg tcaggcggaa ggccatgtcg
     2701 tcaacctggc cggggtcgcc gcgccagaac ttgcggacgg agtcgcggta gatgccgttc
     2761 cactcggccc agagcacggg gaagttgccg acttggtagc cgccttcgcc taagtcccac
     2821 ggctcggcta tcagcttcac ctgcgagagc acggggtctt ggtggatgat gtcgaagaag
     2881 gcgccgaggc ggtcaacctc gtgcagctcc cgggcgagcg cggaggcgag gtcgaagcgg
     2941 aagccgtcaa cgtgcatctc cagaacccag tagcgcaaag agtccatgat gagctggagc
     3001 gtgcgcgggt gggtcatgtt cagggtgttg ccgcagccgg tgtagtccat gtagtagcgc
     3061 ggctgccctg ggacgaggcg gtagtatgcg gcgttgtcta tgccgcggaa gcagagcgtg
     3121 gggccgaggt ggttgccctc gcccgtgtgg ttatagacca cgtcgagtat gacttcgagc
     3181 ccggcgcggt gcagcgtctt caccatcgtc ttgaactcgg agacttgttc gcccgtcgcg
     3241 ccgctcgaag agtagcgcac gtcgggcgcg aagaagccga ttgagttgta gccccagtag
     3301 ttcgtcagcc ccctgtcctg tatgaacttg tcggagacga agtggtgaac cggcatcagc
     3361 tcgaccgcgg tgacgccgag tttgagaaga tagtcaacga cggacgggtg ggcgaggccg
     3421 gcgtaggtgc cgcgcaactg ttcggggact tccgggtgga gcttcgtgaa gcccttgacg
     3481 tgaagctcgt agattatcgt cttgtgccag ggcgtgcggg gcggcgcgtc gcctccccag
     3541 ctaaacgcgg ggtcaaccac gacgcacttc ggcacgttcc gtgcgctgtc gcgctcgtcg
     3601 aaggagaggt cgccggcctc gctgcctatc gtgtagccga agacggcgtc gtcccacgag
     3661 acggtgccgg cgattgactt ggcgtagggg tctaagagca gcttgttcgg gttgaagcgg
     3721 tggcccgcgc gtggctcgta tgggccgtgg gcgcggtagc cgtagagctg ccccggtcga
     3781 acctccggca agtatgcgtg ccagacctgg tcggtctgtt ccgcgaggcg cacgcgctct
     3841 gcctccgcgc cttctgagtc gaacaggcaa agctcgacgg cggacgcgtt ctccgagaag
     3901 agcgcgaagt tcacgcccgc cccgtcccag gtcgccccga gcgggtacgg ctgccccggc
     3961 cagattttca ttcaatctcc agtgattaag gtttcgcgta gagcgccgcg ccccacgctt
     4021 ccaggcgaac gccgccgccc gtctctctga tttgtctggg cggcgcttcg tgctgcgggg
     4081 ggccgccgta ctcgggcgcg ccgctccaaa ggattaactc ccaagcgccg ccgggtggcg
     4141 ggacttgctg cggctcgggc gagaggttgc aggagagcag ggcgggcggg ccttcggcgt
     4201 cgccgcgctc gacggtgagc cagcggcggg cctcgtcgaa ggagacgcgc gtgcgcgcct
     4261 tgtcgcagtt agagagcgcg gcgtgccgcc cgcgggcggc gagcaggtcg cggtaaaagc
     4321 gcaggacttc ggagtgcggc ggcttctcaa ggagcgacca gtcgagcttc gagcgcgcga
     4381 aggttatctc gtcttgcggg tctgcgaagc cgccgacgtt cgactccgtc tccccctcgg
     4441 cgcgcacgaa agaggcgtac tcctcctggc gcccctcgcg cacggcgcgg ccgagcccct
     4501 cgtccgtgtg gctcgtgaag tacaggaagg gcgcgcgctc agaccactcc tgtcccatga
     4561 agagcaaagg cacgttgggc gcgccgcaca ggagtatggc cgccgcgagc ttctgctgtt
     4621 cgaggttgag gaggcgcgac agtcggtcgc cccagtagcc gttcgctatc tggtcgtggt
     4681 tctgcgcgca gaccacgaac tgctcgccgg gccgctccga cgagtcggtg ccgtggcggc
     4741 ggcggcggaa agcagagtga cggccgtcat agacgaagcc cgcggagatc gccttcgcca
     4801 aatcttcgag ccggccgaag tctgagaagt agccgcgctc ggttctcgtg agcagcgcgt
     4861 ggagggagtg gtggaagtcg tcgctccatt gcgcgtccag gccccagccg cacgcccgcg
     4921 ccggcgcgat gacgcgaacg tcgttcaggt cgctctcggc gatggtgtag gcccggcggc
     4981 ccagctcgcg cgctcgcgcg ctgaagcgcg cggccaactc ggcgaggacg tggacggggc
     5041 cggagtcgaa gatggtgtgg acggcgtcga ggcgcagcgc atccacgtgg tactcgtcga
     5101 gccagtagag cgcgttcgag acgaagtggc ggcgcacgcc gtccgagccc tcgccgtcga
     5161 agttgagagc gtcgccccac ggcgacctgt aggtcttgct gaagacgggc atgtactcgc
     5221 cgaggtagtt gccctcgggg ccgaggtggt tatagaccac gtcgaggacg aaggcgagcc
     5281 cctcgcggtg gcaggcgtca atcagcctct tcaggccctc ggggccgccg taggttgact
     5341 gcggcgcgta gaggtgcgcg ccgtcgtagc cccagttgcg cccgccgggg aactctgcca
     5401 cgggcatcag ctcgacggcc gtcacgccca gcgccttcag gtgcgcgagc ttcgggatga
     5461 tagcctcgaa ggtgccttcc ggcgtgaacg tccccgtgtg cagctcgtag ataacgtagt
     5521 ccttgagggc gacgccgcgc cagccttcat ccgtccactt aaactcctcg gagtcaacga
     5581 cgcgcgaggg gccgtggacg cccgcgggct gggagcgcga gaccgggtcg ggccgctcgc
     5641 gctcgccgtc gagcaggtag aagtagcccg cgcccgcgcc cgcgcccacg ccggggacga
     5701 aggcttcgaa gatgtcatcc tccccgcgcc ccatcgagac ggtctgcggc gcgtcgcc
//
LOCUS       DASPKR010000329         8191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_301913, whole genome shotgun sequence.
ACCESSION   DASPKR010000329 DASPKR010000000
VERSION     DASPKR010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8191)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8191
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301913"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VD968_08950"
     CDS             <1..208
                     /locus_tag="VD968_08950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14552.1"
                     /translation="AGSWFSLMNLLLAATNLLPLYQQDGWKCGMVMLRALLERRSALV
                     EWTFTVVGGAASLAVMTLLALKYF"
     gene            623..907
                     /locus_tag="VD968_08955"
     CDS             623..907
                     /locus_tag="VD968_08955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14553.1"
                     /translation="MKTVVAKTLVMLAGVVLVLSLVAAGLLVGARAVEGVESTEARLL
                     FVTLALGGALFSGSKGFTRGGMGEREGQEPGARAHRARADGHAFLRMHGI"
     gene            973..1128
                     /locus_tag="VD968_08960"
     CDS             973..1128
                     /locus_tag="VD968_08960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14554.1"
                     /translation="MLKKFFRDETGLELSEYAVAAALIALAVVMAFGGLGTAIKGKIE
                     ELTGFID"
     gene            1302..1826
                     /locus_tag="VD968_08965"
     CDS             1302..1826
                     /locus_tag="VD968_08965"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF013632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HYE14555.1"
                     /translation="MQVPLIPVGALLVPLALIITYYDVRYRRIPNAFVLAALASGLAI
                     NSIYNGWQGLLSSLGGLALAFGLMMLLHVFGAMGAGDVKLFGAIGAVVGAPLVTQTFV
                     VVLLTGGALALYTIVRSRAFAVTMMRVLQIFVGMLPGWQMPRFAVPADRRHTIPYGVA
                     ITFGSLISIYVARA"
     gene            1889..2818
                     /gene="cpaB"
                     /locus_tag="VD968_08970"
     CDS             1889..2818
                     /gene="cpaB"
                     /locus_tag="VD968_08970"
                     /inference="COORDINATES: protein motif:HMM:TIGR03177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly protein CpaB"
                     /protein_id="HYE14556.1"
                     /translation="MRNKRLLVVLVGAAAFGLVAAVSVSKYLSNAQATPRNTAAVVVA
                     KVPVPLGTKVVAEQLMTVQYPSDALPDGVFDSAEKLVGRVTVVNVAAREPVTDFKLAP
                     EGSVGGLSAVIPEGYRAMTVKVDDVIGVSGFLMPGAMVDVLTVIDPPDETAKRNPVSK
                     IVLQNVKVLASGQNIDKPKDERDADSVKAVTLQVTPEQAEKLALASTEGKLRLVMRNT
                     IDQGDEQTQGVNTRSLLTGQDHAAPAPEPGSLKSERPAARVAPAPAPVMHRRPRASAE
                     QPKQPAAESAPPPAPRPKVEMIQGGKRSTVEFP"
     gene            2841..4415
                     /locus_tag="VD968_08975"
     CDS             2841..4415
                     /locus_tag="VD968_08975"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II and III secretion system protein family
                     protein"
                     /protein_id="HYE14557.1"
                     /translation="MRKSSLVARFAAALGASLVIAAGPAQARQQNSVAASFDSRSAEA
                     VQINVLVGQSRVINFDRAIGRFSVSDPAVAEAVLVAPDQVLVNGKAFGQVNFIAWEQK
                     GSQFVVFDVFVRANLSLIDSQIRLLFPKENISLSQANGSVVISGQVQNVKTSEQVEAV
                     VKAAGFGVVNMLETPVAERAQVQLQVQVAEVSRSRMRELGGTYAYEARPGVGGVVGSG
                     GGPFTVGKIEHGNIFGNTIGSALNLFVMGGNTYNWVKALKTQGALRTLAEPNLIAMDG
                     QQASFLAGGEFPVPVVQNNGDRATVTIIFKEYGVRLNFKPTIIDEDHIRLELEPEVSS
                     IDFANGVKFDGFLVPALRTRRAKTGVELRDGQSFALAGLLDNNEMRSISKIPVLGDIP
                     VLGTLFNSKSFQKNETELMFLVTANVVKPVNRDDLPAMRGVDGLKQGSPLGVEPKGEG
                     IEGDHGFSTGSGASTGQSAPAATPAKSNAGATTKAVARRLPDVTKATEMAGLYPQALA
                     FDVPPAEAQPAVKPAP"
     gene            4473..5618
                     /locus_tag="VD968_08980"
     CDS             4473..5618
                     /locus_tag="VD968_08980"
                     /inference="COORDINATES: protein motif:HMM:NF024792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein TadG-related protein"
                     /protein_id="HYE14558.1"
                     /translation="MGESERLSVGARESERGSVMTVSAFGMLAFLLAVGLCVDISHFY
                     VVRAELQNAADAAALAGASALNSSPGGITEATKRAVLTMNSFEFNNKGVEITPDKVKF
                     AVNFGGPYVGEEEAKSLADNIRFVHVEIPGKNVSVYFAASAIGSEKVKISQDATAGMS
                     MPPNVFCDWIPLAVIDDDASPMVPGRTYTIRGGPHTSVSPGNRQILAVGGTGASVVRE
                     NLARGIRECAEPGSVYTKDTKPGVDAGPVRQGLNTRFDDYSSGLDATEHPPDKNVKEN
                     ITWEEYSNATPGSANWQSPSPGHPGVAMRRVVIIPLIKLSEFDNGRDTVRFYKFAAFF
                     LRRKVSGGSGGDIVAEYIGERIVFGKGGYKPGGGPVNPQLAMPVLYK"
     gene            5633..6121
                     /locus_tag="VD968_08985"
     CDS             5633..6121
                     /locus_tag="VD968_08985"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HYE14559.1"
                     /translation="MKGTLRHLNAAARRLARREDGTQLVELAIVLPVMLVMFGAVAEF
                     GRFFYTYQTLAKATRAGARYLTTEPADGSSDAKAENLVVYGNTTGTGDPVVSGLSAGN
                     VSVERSGGPSSMPERVTVKIVGYTYSPLFDLGKLVGVSGLSLNVDVSPATTMRTLGST
                     AS"
     gene            6139..6780
                     /locus_tag="VD968_08990"
     CDS             6139..6780
                     /locus_tag="VD968_08990"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HYE14560.1"
                     /translation="MRRGFKFHRDERGSTLVEFSIGALVFLTATFGVLEFSRLLWAHN
                     ALSDAARRGARYAINHASADEAAVRNVVVYGNPEGAGNPTVHALSTSNVEVEYTASPV
                     TGVFGYPEGTVTVSITGYKHKFVVPGLTKTLSMPAYTTTLTAENAGMIPADITPTPTP
                     SPAPTPSSTPTPSATPSPSPTPTPRACNAGENPSVKGCVCQPPMTVKSNGECQ"
     gene            6805..8016
                     /locus_tag="VD968_08995"
     CDS             6805..8016
                     /locus_tag="VD968_08995"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYE14561.1"
                     /translation="MTQKLTFVILSNGLGSFRELRGALSQQEGARVLAGGDDAEQVIG
                     EIARLRPSAAIIALGPSAEADLRHVERVARECPRTAVICASADASPDLILRSMRAGAR
                     EFLRLPVRPDEFQTVYARVSEFCAVQPEAPKKRGRVVAVFSSKGGTGTTFVATNLASA
                     LAAPTVLVDLNLQAGDLGLFLGVEPKFSIADVVEHRERVDDSLLRTFLTPHSATLSLL
                     AAPREADSADDIEPEHVFQVIELLRERFDYVVVDPQHTFDPITLAALDQSDDIVLLLT
                     LDIPAIRSAQRALKIFDRLGYPRHKVQIVVNRFSKQIDLDLRQVERYLGERVMGYVQS
                     DYRTAVNSINLGQPLVESEPASKIATELRQIAANFSASARPAEQPGARRGRLLGSLFR
                     RDKETAAEKAG"
BASE COUNT         1417 a         2784 c         2724 g         1266 t
ORIGIN      
        1 ggcggggagc tggttcagct tgatgaacct gctgctggcg gcgactaacc tcctgccgct
       61 gtaccagcag gacggttgga agtgcgggat ggtaatgctg cgagctttgc ttgagcgacg
      121 cagcgcgctc gtggagtgga ctttcacggt cgtggggggc gcggcgagcc tcgccgtgat
      181 gactttgctg gccttgaaat atttttagag gggattagcg gaacgacgcg gacggccggg
      241 gccggccctg atgagagagg cgctgtctct catcagggcc ggccccggcc gtttcgtttc
      301 acgagtcgcc cgctgttgcc gtcggttgaa ggcggcgcgc tggcgccgtc aaccagaggc
      361 tacaaaactt taagtcgctc ggccggcgaa gtttaagtcg cggcgtgcga ccccgcgact
      421 ttgagagtgc gggcggtgtt gtcaaccgga ggctacaagg ccgccgggcg cagaacactc
      481 gaaaccgcga gactggcggg ttttcgtcgg agccgagccg tggcacgcgc cttgtcattg
      541 gcacgtgcgt ccgcgcaaag cgtcgcctgt gacgagtggc accgtcgggt gagcggcctt
      601 tatgcgcggg gaaggaagac ggatgaagac tgtggtcgct aaaacgctgg tgatgctcgc
      661 aggggtcgtg ctggtgcttt cgctcgtcgc cgcggggctg ctcgtagggg ctcgcgcggt
      721 cgaaggcgtg gagagcacgg aagcgaggct cctgttcgtt acgcttgcgt tgggcggcgc
      781 tctcttcagc ggctcgaagg gtttcacgcg cggcggcatg ggcgaacggg aggggcaaga
      841 gccgggcgcc cgcgctcacc gagcgagggc cgacggccac gccttcctgc ggatgcacgg
      901 catttaacct tcggcctccg ggccgccaac gctcgactct caaacaccca atctcaaagg
      961 agcaaaagaa agatgttgaa gaaattcttc cgcgacgaaa ccggcctgga gctttccgag
     1021 tacgcagtgg ccgcggccct catcgcgctg gcagtcgtca tggccttcgg cggcctcggc
     1081 acggccatca agggcaagat cgaagagctg accggcttca tagactaacc gggaggcgaa
     1141 cgtacacgcg cgggaggcgg cgcgccgggc cgacgccctt aaggagaagg gaagggcgaa
     1201 gacggcaggc gcgccgctac tcctcgcgca aagcagaagg ccaccaaacc ccgagcaccc
     1261 cgccgcccgc ggcggagggt gagaagcgag ggcgtcagaa catgcaagtc cccttaatcc
     1321 cagtcggggc gctgctcgta cccctggcac tgataatcac ctactacgac gtgcgctacc
     1381 gccgcatccc caacgcgttc gtgttagcgg cgctggcgag cggcctcgcc attaactcga
     1441 tctacaacgg ctggcaaggg ctgctctcaa gcctcggcgg gctcgcgctc gccttcgggc
     1501 tgatgatgtt gctccacgtg ttcggcgcga tgggggccgg ggacgtgaag ctgttcggcg
     1561 cgataggggc ggtcgtgggc gcgccgctcg tcacgcagac cttcgtggtc gtactgctga
     1621 cgggcggcgc gctcgcgctc tacacgattg tgcgctctcg cgccttcgcc gtgacgatga
     1681 tgcgcgtgct ccagatattc gtcggcatgc tgccgggctg gcagatgccg cgcttcgccg
     1741 tgccggccga ccgccggcac acgatacctt acggcgttgc catcaccttc ggcagcctca
     1801 tctcgattta cgtagcgcgc gcctgacggc ggcggcgccg cgcaacacgg ctcacgcagg
     1861 tggaacccct cgggagggag gaatagcaat gaggaacaag cgtcttctcg tcgtgctggt
     1921 cggcgcggcc gcgttcgggc tggtggcggc cgtctcggtg agcaagtacc tttcgaacgc
     1981 gcaggccacg ccgcgcaaca cggcggcggt ggtcgtcgcg aaggtgcctg tgccgctcgg
     2041 gacgaaggtc gtcgccgagc agctcatgac ggttcagtac ccctcggacg ccctgcccga
     2101 cggggtgttc gactcggccg agaagttggt ggggcgcgtc acggtcgtca acgtcgccgc
     2161 gcgcgagccc gtcaccgact tcaagctcgc gcccgagggc tcggtcggcg gcctctccgc
     2221 cgtcataccc gagggctatc gcgcgatgac cgtcaaggtt gacgacgtga taggcgtctc
     2281 cggcttcctc atgccgggcg cgatggttga cgtgctcacg gtcattgacc cgccggacga
     2341 gaccgccaag cgcaaccccg tatcgaagat agtccttcag aacgtgaagg tgctcgcctc
     2401 ggggcagaac atagacaagc cgaaggacga gcgcgacgcc gactccgtca aggccgtcac
     2461 gctccaggtg acgccggagc aggccgagaa gctcgcgctc gcctcgaccg agggcaagct
     2521 ccgcctcgtc atgcggaaca ccatagacca gggcgacgag cagacgcagg gcgtcaacac
     2581 gcgctcgctc ctgacggggc aggatcacgc cgcgcccgcg cccgagccgg gctcgctcaa
     2641 gagcgagcgg cccgccgcgc gcgtggcccc tgcgcccgcg cccgtcatgc acaggcggcc
     2701 gcgcgcctcg gccgagcagc cgaagcagcc ggcggccgaa tcagcgccgc cgcccgcccc
     2761 ccgcccgaag gtcgagatga tacagggcgg caagcgcagc acggtcgagt tcccgtaacg
     2821 caggaaagag gagaaaagtc atgcggaaaa gttctctcgt cgcacgcttc gcggccgcgc
     2881 tgggcgcgtc gctcgtgatc gcggccggcc cggcgcaggc ccggcagcag aattcggtcg
     2941 cggcgtcgtt cgactcgcgc tcggccgaag cggtgcagat aaacgtgctc gtcggccagt
     3001 cgcgcgtcat caacttcgac cgcgccatcg gccggttctc cgtctccgac cccgcggtgg
     3061 ccgaggccgt gctcgtcgcg cccgaccagg tgctcgtcaa cggcaaggcg ttcgggcagg
     3121 tcaacttcat cgcgtgggag cagaagggct cgcagttcgt cgttttcgac gtgttcgtgc
     3181 gcgccaacct ctcgctcatt gactcgcaga ttcgcctgct cttccccaaa gagaacataa
     3241 gcctcagcca ggccaacggc tcggtcgtca tctccggcca ggtgcagaac gtcaagacct
     3301 ccgagcaggt cgaggctgtc gtcaaggccg cgggcttcgg cgtcgtcaac atgctcgaga
     3361 cgcccgtggc cgagcgcgcg caggtgcagc tacaggtgca ggtcgccgag gtgagccgaa
     3421 gccgcatgcg cgagctcggc ggaacctacg catacgaggc gcggcccggc gtcggcggcg
     3481 tagtgggctc gggcggcggc ccgttcacgg tgggaaagat cgagcacggc aacatcttcg
     3541 gcaacaccat agggagcgcc ctcaacctat tcgtgatggg cggcaacacc tacaactggg
     3601 tgaaggcgct caagacgcag ggcgccctgc gcactctggc cgagccgaac ctgatagcga
     3661 tggacggcca gcaggcgagc ttcctcgcgg gcggcgagtt ccccgtcccc gtggtgcaga
     3721 acaacggcga ccgcgccacc gtcaccatca tcttcaagga gtacggcgtc cgcctcaact
     3781 tcaagccgac catcattgac gaggatcaca tacgcctcga gctcgagccc gaagtctcct
     3841 cgattgactt cgccaacggc gttaagttcg acggcttcct cgtcccggcg ctgcgcacgc
     3901 gccgcgccaa gacgggcgtc gagctgcgcg acggccagtc gttcgcgctc gcggggttgc
     3961 tcgacaacaa cgagatgcgc tccatctcga agatacccgt gctgggcgac atacccgtcc
     4021 tcggcacgct ctttaactcg aagtcgttcc agaagaacga gaccgagctg atgttcctcg
     4081 ttaccgccaa cgtggtgaag ccggtcaacc gcgacgacct gcccgccatg cgcggcgttg
     4141 acggcctcaa gcagggctcg ccgctcggcg tcgagccgaa gggcgaaggc atcgagggcg
     4201 accacggctt ctcgaccggc tccggcgcga gcacgggcca gtcggcacca gcggcgactc
     4261 ccgcgaagtc gaacgcaggc gcgacgacaa aagctgtcgc gcgccgcctg cccgacgtga
     4321 cgaaggcgac tgagatggcc ggcctctacc cgcaggccct cgccttcgac gtgccgcccg
     4381 ccgaggcgca gccggccgtc aagccggcgc cttaaagacg cgatagcgtt cgggcctgcg
     4441 ttcgttcgag agctttcgag aggaggggag cgatgggcga gtcggagaga ttaagtgtcg
     4501 gcgcgcgcga gtcggagcgc ggctcggtga tgacggtcag cgccttcggg atgctcgcgt
     4561 ttctcctcgc cgtcggcctg tgcgttgaca taagccattt ctacgtcgtc agggccgagc
     4621 ttcagaacgc ggccgacgcc gcggcgctcg caggggcgtc ggccctgaac tcctcccccg
     4681 ggggcatcac cgaggcgacg aagcgcgcgg tgctcacaat gaactcattc gagttcaaca
     4741 acaagggcgt cgagataacg cctgacaagg tcaagttcgc agtcaacttc ggcggccctt
     4801 acgtgggcga ggaggaggcg aagtcgcttg ccgacaacat acgcttcgtc cacgtcgaga
     4861 taccgggcaa gaacgtcagc gtctatttcg cagccagcgc catcggcagc gaaaaggtca
     4921 aaatctcgca ggacgcaacc gccggcatga gcatgccgcc caacgtcttc tgcgactgga
     4981 taccgctcgc cgtcattgac gacgacgcga gcccgatggt gccgggccgc acgtacacga
     5041 tacgcggcgg cccgcacacg agcgtctcgc cgggcaaccg gcagatcctc gccgtcggcg
     5101 gcacgggcgc cagcgtcgtg cgcgagaatc tcgcgcgcgg aataagggag tgcgccgagc
     5161 cgggctcggt ctatacgaag gacacgaagc cgggcgttga cgcaggcccc gtgcgccagg
     5221 gcctgaacac gcgcttcgac gactactcct ccggcctcga cgcgaccgag cacccgcccg
     5281 acaagaacgt taaagagaac atcacctggg aggagtacag caacgccacg cccggctcgg
     5341 ccaactggca gtcgccttcg ccgggccacc ccggcgtggc gatgcgccgc gtcgtcatca
     5401 tcccgctcat aaagctcagc gagttcgaca acgggcgcga caccgtccgc ttctacaagt
     5461 tcgccgcctt cttccttcgc cgcaaggtct cgggcggctc gggcggcgat atcgtggccg
     5521 agtacatcgg cgagcgcata gtcttcggca agggcggcta caagccgggc ggcggccccg
     5581 tcaacccgca gctcgcgatg ccggtgctct acaagtgagg gggggcggcg cgatgaaagg
     5641 cacgctgaga cacctgaacg cagccgcccg ccggctcgcg cgacgcgaag acggcacaca
     5701 gttagtcgag ctggcgattg tgctccccgt catgctcgtc atgttcggcg ccgtggccga
     5761 gttcggacgc ttcttctaca cctaccagac gctcgcgaag gccacgcgcg cgggcgcgcg
     5821 ctaccttacg accgagccgg ccgacggctc ctcggacgcg aaggccgaga acctggtcgt
     5881 ttacggcaac acgacgggga cgggcgatcc ggtggtgagc ggcctctcgg ccggcaacgt
     5941 ctcggtcgag cgctcgggcg ggccttcctc gatgcccgag cgcgtcacgg taaaaatcgt
     6001 cggctacacc tactcgccgc tcttcgactt ggggaagctc gtgggcgtga gcgggctttc
     6061 gctgaacgtt gacgtgagcc cggcgacgac gatgcgcacg ctcggctcaa cggcgagctg
     6121 aggggggggc tactggcgat gaggcgcggc ttcaaattcc acagagacga gcgcggctcc
     6181 accctcgttg agttctcaat cggcgcgctc gtctttctga cggcgacctt cggcgtcctg
     6241 gagttctcgc gcctgctctg ggcgcacaac gcgctctcgg acgcggcgcg ccgcggcgcg
     6301 cgctacgcga tcaatcacgc ctcggccgac gaggcggccg tcaggaacgt ggtcgtctat
     6361 ggcaacccgg agggcgcggg caacccgaca gtccacgcgc tttcaacgtc gaacgtcgag
     6421 gtcgagtaca cggcctcgcc cgttacgggc gtcttcggct accccgaggg gactgtgacg
     6481 gtgagcatca cgggctacaa gcacaagttc gtcgtccccg gcctgacgaa gacgctctcg
     6541 atgcccgcat acacaacgac gctcacggcc gagaacgccg gcatgatacc ggccgacatc
     6601 acgccgacgc ctacgcccag cccggcgccg acgcctagtt cgacgcccac gcccagcgct
     6661 acgccttcgc cctcgcccac acctacgccg agggcctgta acgctggcga gaacccgagc
     6721 gtgaagggct gcgtctgcca gccgccgatg acggtgaaga gcaacggcga gtgccagtaa
     6781 ggggcgcagc cgccgggggg agagatgaca cagaaactca ctttcgtgat tttgagcaac
     6841 gggctcggca gcttccgcga gctgcgcggc gcgctctcgc agcaggaggg cgcgcgcgtg
     6901 ctcgccgggg gcgacgacgc cgagcaggtc atcggcgaga tagcgcggct gcggccctct
     6961 gccgcaatca tcgcgctcgg cccctcggcg gaagccgacc tccgccacgt cgagcgcgtc
     7021 gcgcgcgaat gcccgcggac ggccgtcatc tgcgcctcgg ccgacgcctc gcccgacctt
     7081 atcttgcgct cgatgcgcgc tggcgcgcgc gagttcctgc gcctgcccgt ccgccccgat
     7141 gagtttcaga ccgtctatgc gcgcgtctcc gagttctgcg ccgtgcagcc cgaggcgccg
     7201 aagaagcgcg ggcgcgtcgt cgcggtcttt tcgagcaagg gcgggacggg cacgaccttc
     7261 gtcgccacga acctagcctc cgcccttgcc gcgccgaccg tccttgttga cctcaaccta
     7321 caggcaggcg acctcggcct cttcctcggc gtcgagccga agttctccat cgccgacgtg
     7381 gtcgagcacc gcgagcgcgt tgacgactcg ctccttcgca ccttcctgac gccgcactcg
     7441 gcgacgctct ctctgctcgc cgcgccgcgc gaggccgact cggccgacga catagagccc
     7501 gagcacgtct tccaggtcat agagctcctg cgcgagcgct tcgactacgt cgtcgttgac
     7561 ccgcagcaca ccttcgaccc catcacgctc gccgcgctcg accagtcgga cgacatagtg
     7621 ctcctgctca cgctcgacat accggccatc aggagcgcgc agcgggcgct caaaatcttc
     7681 gaccggctcg gctacccgcg ccacaaggtt cagatagtcg tcaaccgctt cagcaagcag
     7741 attgatttag acctgcggca ggtcgagcgc tacctcggcg agcgcgtcat gggctacgtg
     7801 cagagcgact accgcacggc cgtaaactcc atcaacctcg gccagccgct cgtcgagtcc
     7861 gagccggcgt cgaagattgc gacagagctg cgccagatag ccgccaactt cagcgcctcg
     7921 gcacgccccg cggagcagcc gggcgcgcgc cgcggccgcc tcctcggctc gctattccgc
     7981 cgcgacaaag agacggcagc cgaaaaggcg ggctaactga cggccgtggg ttaaacggcc
     8041 actgactaat gactactaaa tcatcatgtc actccgcgaa agactaatca gggacacggc
     8101 ggccgcgggc ggcgcggcgc tcttcggccg cgcctccgag ggcgagcagc agctcgactt
     8161 cacggcgcag cgcctcgtcc cccttgcagg c
//
LOCUS       DASPKR010000330         6154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_820413, whole genome shotgun sequence.
ACCESSION   DASPKR010000330 DASPKR010000000
VERSION     DASPKR010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6154)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6154
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_820413"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..299)
                     /locus_tag="VD968_09000"
     CDS             complement(<1..299)
                     /locus_tag="VD968_09000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14562.1"
                     /translation="MNRLRNNLVLLCPIVLCAALVTVQTVALAGEVLITFESVTGITT
                     TAAYPDGSLVPAGARLSTQLQMSDGLSFSSTAGYVALVRLGSGHATSGVNGIGGV"
     gene            complement(364..1638)
                     /locus_tag="VD968_09005"
     CDS             complement(364..1638)
                     /locus_tag="VD968_09005"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vanadium-dependent haloperoxidase"
                     /protein_id="HYE14563.1"
                     /translation="MSAGRAAVVVRDPNAALPAQLSDAVTEWNQEAVRLTLLPASSLS
                     PVQQTRVMAIVQVSVHDAVNGLTGEYATYLSPGPVPADASPEAAAIAAAHHALRDLFA
                     NQPTQVAQLDTLFADSLAARGLLATDPGVEYGRSAAEAILATRANDHSALAESQYPYA
                     APGAGSPGVWTPVSSAPTAQALLPGWGNVTPFVLRSGSQFRPDAPPALDSEQYARDYN
                     EIQVIGASSSPVRTTEQTQIAQFWLASPTAIWNPVLRQVIATRDLDLSEKARAFALFY
                     LAASDASVACWDAKYAYNFWRPQAAIRNGHLDGNDLTAGDASWSPLHPTPRHPEYPSG
                     HAANSGAMAAILALLFGDDPGVPLVVTLSGVTRQWSTFDEAVEEVIDARVYSGIHFRT
                     ADEVGARMGRQVARFVSTHALQRCPRGRPRCS"
     gene            2104..2679
                     /locus_tag="VD968_09010"
     CDS             2104..2679
                     /locus_tag="VD968_09010"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE14564.1"
                     /translation="MPPSLPAHQVTRLLVRWREGDQRALDELMPLVYAELHRLAARYM
                     RGERPGHTLQTSALVNEVYLRLAGHEDIQWQDRAHFFAVAAQAMRRILVDHARRRGNQ
                     KRGGDVHKVALDEALIVSDERAAEVVALDDALARLAEVAPRKSRLVELRFFGGLGIEE
                     AAEVLQVSPGTVMRDWTFAKAWLRREITGGE"
     gene            2716..5376
                     /locus_tag="VD968_09015"
     CDS             2716..5376
                     /locus_tag="VD968_09015"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE14565.1"
                     /translation="MTPERLQQIEELFHSALALEPHGRADFLARACEGDEALRREVES
                     LLKSHDQGESFIEQSAADVAAELLAGGRAKLEAGRRIARYEIKSLLGEGGMGEVYLAR
                     DTHLDRPVALKLLSAHFMADEEHVRRFQREALAASALNHPNIVTVHEVGEWNGRDFLV
                     TEYVEGVTLRTRMRGRRLSPAAAIDIALQVAGALSAAHDAGIVHRDIKPENVVLRPDG
                     LVKVLDFGIAKYAGPARGRDAKHSWVKTATGVVIGTTAYMSPEQARGQGVDARTDVWS
                     LGVILYEMVTRRLPFPGKTPTDRVAAILEREPEPLSHLRRGVPAELERIVGRALAKDR
                     DERYARAADLAEDLRKLRVTLGAEPRFRFALPAPARGLLFSRKRRAVALAALLLVTTA
                     ALVAGLSRLPFRQTPTPAPQTEIKSLAVLPLENPSGDASQDYFADGVTEALITDLAKV
                     GALRVISWPSVMQYKGARRALPEIGRELNVDAVLTGTVVRSGERVRIAGQLIHATTGR
                     KLWAGNYERELRDVLSLQREVTRDVVGELRVKLSQQEQAQVGEARTVNPEAYDHYLRG
                     RFYLNRQTKGDNEAAITALERAVAADPTFAAAHAELAQAYVWKLFFFAPGEEQWAEKA
                     FVAAEKALALDPDSGVAHLARGRILWTPANRFPHEKAIREYRRSLTLDPTLDEARNQL
                     AVIYCHIGAFDEALQESREAVAMNPNNNLANLRIGQVLNFQGKYEQALSVLRSIPLET
                     NPPLAGHQIAWALFNLGRKEEAAATLEQLLRDYPEDTGGVFTSMQAVLAASAGQERMA
                     EDKIRSAVEKGKGFGHFHHTAYHIACAYALMDKPEQAIKWLEAAAEDGFPCYPLFERD
                     TNLDNLRQDARFVTFLTKLRQQWEHYRTIL"
     gene            complement(5487..>6154)
                     /locus_tag="VD968_09020"
     CDS             complement(5487..>6154)
                     /locus_tag="VD968_09020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14566.1"
                     /translation="NFELRRRFANNFQFLASYTWSHAIDDSSDLQTLLLPQDVTRLDL
                     ERADSLFDQRHRFVFSGVVAAPGGWRGAGGWRSFLSDFIVAPIFEVSSGRPFNILTGQ
                     DTNNDLSTSTDRPSVAADGTLFVPGPFQSGSLGRNMGLTESYASLDLRVARNIRMGER
                     LRLEVIAEGFNLFNRFNQAAASPRFEDVNLVNERAGNGRYRSRATAASDPRQFQFGLK
                     LNF"
BASE COUNT         1061 a         1980 c         2080 g         1033 t
ORIGIN      
        1 ttgacgccgc cgatgccgtt cactccgctc gtcgcgtgcc cgctgccgag cctcaccagg
       61 gcgacgtacc cggcggtcga gctgaagctc aggccgtcgg acatctgcaa ctgtgtgctc
      121 agacgcgcgc ccgccgggac gaggctgccg tccgggtagg cagccgtcgt cgttatcccg
      181 gtaacactct cgaaggtaat cagaacctcg ccggcgagcg cgacagtctg aacagtgacg
      241 agagctgcgc acagcacgat tgggcaaagc agcaccagat tgtttctgag cctgttcatg
      301 acttgttctc ctttcactgt ttgccgcccg cagaacaggc gttgcctcgc gcgtctaaca
      361 accctaggag catcgagggc ggcccctcgg acagcgctgg agggcgtgcg tcgagacgaa
      421 gcgcgctacc tgccggccca tcctcgcgcc cacctcgtcg gccgtgcgga agtgaatccc
      481 cgaatagacg cgcgcgtcaa tgacctcctc aacggcctcg tcgaacgtgc tccactggcg
      541 tgtcacgccc gacagtgtga cgacgagcgg cacgcccgga tcgtcgccga acagcagcgc
      601 gaggattgcg gccatggcgc cgctgtttgc cgcgtgcccg gacggatact cgggatgtcg
      661 gggcgtcggg tgaagcggcg accaagaggc gtcgcccgcc gtcaagtcgt tgccgtcgag
      721 gtggccgttc ctgatggcgg cctggggccg ccagaagttg taggcgtact tggcgtccca
      781 gcacgcgacg ctcgcgtccg aggcggccag gtagaagagc gcgaaggccc gtgctttctc
      841 cgacaggtcg aggtcgcgcg tggcgatgac ctgcctcagg actgggttcc agatcgcggt
      901 cggggatgcc agccagaact gcgcgatctg cgtctgctcg gtcgttcgca cggggctgct
      961 cgacgcgccg atgacttgga tctcgttgta atccctcgcg tactgctcgc tgtcgagcgc
     1021 cggaggcgcg tcgggccgga actgcgagcc gctccgcagc acgaacgggg tcacattccc
     1081 ccagccgggc agaagggcct gcgcggtggg cgcgctggag accggcgtcc agacgccggg
     1141 cgagcccgcc cccggggcgg cgtaagggta ttgggactcg gcgagggcgg aatgatcgtt
     1201 ggcgcgggtc gcgaggatgg cttcggcggc cgaacggccg tactcgaccc cggggtcggt
     1261 tgccaacagc ccgcgcgcgg cgagcgagtc cgcaaacagg gtgtcgagct gcgcgacctg
     1321 agtcggctga tttgcgaaga ggtcgcgcag cgcgtgatgc gccgcggcaa tcgccgccgc
     1381 ctcgggcgag gcgtccgcgg gcaccgggcc gggcgaaaga taggtcgcgt actcgcccgt
     1441 gaggccgttg accgcgtcgt ggacggacac ctgcacgatc gccatcacgc gcgtctgctg
     1501 gacgggcgag aggctcgacg ccggtaataa ggtgagcctg actgcttctt ggttccactc
     1561 cgtgaccgca tcactcaact gcgccggcag cgccgcgttc gggtcacgca caaccacggc
     1621 ggccctgccc gcggacaact ccgggcgaac catttcgccc gcccggcacg cttcgccaac
     1681 tgccgaatgt gcaatgcccc ccaagagaag ggcaccaagg ctgattgcga tcacgagccc
     1741 tctgctcagc gttctaactt tcatgtttga tcctcctcta ctacgttggc gtgggcggct
     1801 tgtacggccg cgccgtggcg cgtgcccacc gcctaccggg cgaccgtctg gttgtggttc
     1861 ccgaggttga caccgcctgc tttgacgttc gatttgattt tcatctccct gcccctttca
     1921 gcggtgttat tggttcggag cggcaggttc tcgctgcctt caccccttta ggcgcaaaac
     1981 gcgggcgaac cctctaacgc ccgtcgaaat attttttccg cgcctgatgc cccgcccgcg
     2041 gtgctataat cgcgcgcatc ccgactgacc aaagcccccg gccccggacg cgagagttga
     2101 cacgtgccgc cgtcgctccc agcccaccag gtcacacgac tgctcgtccg ctggcgcgag
     2161 ggcgaccaac gcgcgctcga cgaactgatg ccgctggtct acgcggaact gcaccgcctc
     2221 gccgcccgct acatgcgcgg cgagcgcccc gggcacacgc tgcaaacctc ggcgctggtg
     2281 aacgaggtct acctgcgtct cgccggccac gaagacattc aatggcagga tcgcgcacac
     2341 ttcttcgccg tcgcggccca ggcgatgcgc cgcatcctcg ttgaccacgc gcgccgccgc
     2401 ggcaaccaga agcgtggcgg cgacgtgcac aaggttgcgc ttgacgaggc gttgatcgtc
     2461 tccgacgagc gcgccgcgga ggtggtcgcg ctcgacgacg cgctcgcgcg cctggccgag
     2521 gttgccccgc gcaaaagccg gctcgtcgag cttcggttct tcggcgggct gggcattgag
     2581 gaggcggcgg aggtcttgca ggtctcgccc ggcacggtga tgcgcgactg gacgttcgcc
     2641 aaggcgtggc tgcggaggga gatcacgggc ggcgagtaga accgatcctg attttgcgcc
     2701 gcggcggcga ctctcgtgac acctgaacgc ttacaacaga tcgaggagct gttccactcg
     2761 gcgctggcgc tggagccgca cgggcgcgcc gacttcctcg cgcgggcctg tgagggcgac
     2821 gaagccctgc ggagggaggt cgagtcgctg ctcaaatctc acgatcaggg agagagtttc
     2881 atcgagcagt cggcggcgga tgtcgccgcc gagctgctcg ccggcggccg ggccaagtta
     2941 gaggcggggc ggcggatcgc ccgctacgag atcaagagtc tgctaggcga gggcggcatg
     3001 ggcgaagtct atctcgcccg cgacacacac ctcgaccgac ccgtcgcgct caagctgctc
     3061 tcggcgcact tcatggcgga cgaagagcac gtgcgccgct tccaacgtga ggcgctggcc
     3121 gcttcggcgc tcaaccaccc gaacatcgtc accgtccatg aggtcggcga atggaacggc
     3181 agggacttcc tcgtcaccga gtatgttgag ggcgtcaccc tacgcacgcg catgaggggc
     3241 aggcggctct cgcccgccgc ggccatagac atcgcgctgc aagtcgccgg cgcgctctcc
     3301 gccgcgcacg acgccgggat cgtgcaccgt gacatcaagc ctgagaacgt cgtgttgagg
     3361 cccgacggcc tcgtcaaagt cctggatttc ggcatcgcca agtatgccgg cccggcccgc
     3421 gggcgagacg cgaagcactc atgggtcaag acggcgacgg gcgtcgttat agggacgacg
     3481 gcctacatgt cgccggagca ggccaggggg cagggggtgg acgcgcgcac cgacgtatgg
     3541 tcgctgggcg tgatcctcta cgagatggtc acccgccgcc tccctttccc cggcaagacg
     3601 ccgaccgacc gcgtggccgc catcctggag cgggagccgg agccgctcag tcatctgcgg
     3661 cgcggcgtcc ccgccgaact cgaacgaatt gtcggccgcg cgctcgccaa ggaccgggac
     3721 gagcgctacg cgcgggccgc cgacctggct gaggatttac gcaagctccg ggtgacgctc
     3781 ggtgccgagc ctcgcttccg tttcgccctg cccgccccgg cgcgcggtct tctgttctct
     3841 cgcaagcgca gggcagttgc gctcgcggcg ctcctgcttg tcaccaccgc cgccctcgtt
     3901 gccgggctct cccgcctgcc cttccgccaa actccgacac cagcgccgca aacggaaatt
     3961 aagtcgctag cggtgctgcc gctggagaac ccctccggcg acgcttcaca ggactacttc
     4021 gccgacgggg tgaccgaggc gctgatcacc gacctggcaa aggtcggcgc gctgcgggtg
     4081 atttcatggc cgtcggtgat gcagtacaag ggcgcgcgac gggccctgcc ggaaataggc
     4141 cgcgagttga acgtggatgc agtgctgaca ggtacggtgg tgcgctcggg cgagcgcgtg
     4201 cggatcgccg gccagttgat tcatgcgaca acgggccgaa aattatgggc cggcaactac
     4261 gagcgagaac tgcgtgacgt gctgtcgtta cagagagagg tgacgcgaga cgtggtcggc
     4321 gaactcaggg tcaaactttc acagcaagaa caggcccaag tcggggaggc ccggacggtc
     4381 aacccggaag cttacgatca ctatctccgc ggacggtttt atctcaaccg ccaaactaaa
     4441 ggtgataatg aagccgccat cacggctctg gagcgcgctg tggccgcaga cccgaccttc
     4501 gccgcggccc atgcggaact ggcccaggca tacgtatgga agctgttttt cttcgccccc
     4561 ggagaggagc agtgggcgga gaaggctttt gtggcggcag agaaagcgct cgcgttagac
     4621 ccagattcag gcgtcgccca tctggcccgt ggccgcatcc tctggacgcc tgccaaccgt
     4681 ttccctcacg agaaggcaat tcgagaatat cgccgttcgc tgactttgga cccgactctg
     4741 gatgaggcgc gaaatcagct tgcagtcatc tattgtcata tcggggcttt tgacgaggcg
     4801 ctccaggaat cgcgcgaagc ggtcgcgatg aaccccaaca ataacttggc aaacctccga
     4861 atcggacagg ttctaaattt ccaagggaag tatgaacagg ccctgtccgt tctgcgctcc
     4921 atccctctgg aaaccaatcc gccgttggcc gggcaccaga tcgcctgggc gctcttcaat
     4981 ctcgggagga aagaggaggc ggccgctacg cttgagcaac ttttaagaga ttacccggag
     5041 gacacgggcg gcgtgttcac cagcatgcag gcggtcctgg cagcttcggc cgggcaagag
     5101 cgcatggcgg aggataagat caggtcggcc gtcgaaaagg gaaagggctt tggtcacttc
     5161 catcatacgg cctatcacat cgcctgtgct tatgcgctga tggataaacc tgagcaggcg
     5221 atcaagtggt tggaggcggc ggctgaggac gggttcccgt gctacccgct gtttgagcgg
     5281 gataccaacc tagataacct ccgacaagat gcccgcttcg tcaccttctt gacgaagctg
     5341 aggcagcagt gggagcatta caggactatt ttatgatact ggcgcgcgcc cttctcccgc
     5401 gtcgcgcgca aagcctaatg caaaatgaag ccgcccggct gtcgctttgg cagcccgggc
     5461 ggcttcaaat taggcacagg ccctctctaa aagttcagct tgaggccgaa ctggaactgc
     5521 cgggggtcgg aggcggccgt tgcgcggctg cggtagcggc cgttgccggc ccgctcgttg
     5581 acgagattca cgtcctcgaa gcgggggctg gcggccgcct ggttgaagcg gttgaagagg
     5641 ttgaagccct cggcgatgac ttcgaggcgc aggcgctcgc ccatgcgtat gttgcgcgcg
     5701 acccggaggt cgagcgaggc gtaggactcg gtcaggccca tgttgcggcc taagctgccg
     5761 gactggaacg ggccggggac gaagagcgtg ccgtcggcgg cgaccgacgg gcggtcggtc
     5821 gaggtcgaga ggtcgttgtt cgtgtcttgc cccgtaagga tgttgaaggg gcggcccgag
     5881 gagacttcga atatcggggc cactatgaag tcggagagga agctgcgcca gccgccggcg
     5941 ccgcgccagc cgcccggcgc cgccacgacg ccgctgaaga cgaagcggtg gcgctggtcg
     6001 aagagcgagt cggcgcgctc gaggtcgagg cgcgtcacgt cctgcggcag caggagagtc
     6061 tgcaagtccg acgagtcgtc aatagcgtgc gaccaggtgt aggaggccag gaactggaag
     6121 ttgttggcga agcggcggcg cagctcgaag ttgc
//
LOCUS       DASPKR010000331         8354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_562340, whole genome shotgun sequence.
ACCESSION   DASPKR010000331 DASPKR010000000
VERSION     DASPKR010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8354)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8354
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_562340"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..915)
                     /locus_tag="VD968_09025"
     CDS             complement(<1..915)
                     /locus_tag="VD968_09025"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HYE14567.1"
                     /translation="MGERAMTAAGAPEAVRNGREPASAAAPAEAPEASAPAAAEPPSS
                     DLQAMSAEIVGLLYEQAFSMGQARDERDICEAFTNILLRHWDLCCVSTFLRDDDGRLR
                     MCADFNHRHLDTDSTHSAAQRLAAEVERTGEEFQFWADDADDDAPQGLGGLFARASLK
                     AGAAIPIRAQGGLAGALVVASADPARLRAALGGARRIGPAIVIGIGNARRGEAMADQH
                     RRIESLVGELKRRTRELEEANLELQRIGRYRSLFLQRMSHELRTPLTSILGFAEILLD
                     QEDLDGAQRRFCEKIQSSGFQLQASLNQL"
     gene            1201..2874
                     /locus_tag="VD968_09030"
     CDS             1201..2874
                     /locus_tag="VD968_09030"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HYE14568.1"
                     /translation="MNGQLSDHPLAGLIHEISEAQLSGALRLAHERVKAVIYFEGGEL
                     VAALTNIRAYRLVEVVRRAGAVAEERLAGVVREGMTDEQAGIALVRSGALSPKELKKH
                     QDRQAEEVLRSLLRWEGGEWEFAPRVRIAGEYRSRVSAAPLLAESARSLPAERLRALM
                     SPESESVSPAPDLPARMEAGLQLLPTEAFVLTRVQGPMSLAELLAVSGQPEDETLRSV
                     YVLALGGLLRREGQARAFSPEALARAQSQSQAPAAAAPPQRQKAAAEPAPEAAPAKEE
                     TPQEAATAPQQQAEPEPKPQPGAEQDPQAGMEELFERSRAATHYEVLGVTRSAKPDEL
                     KRAYYSLARRLHPDRFRRFADDAMRLQVDLAFAKIAQAYEVLSDSKLRASYDLKLQSA
                     QRSAAARSAPKDMPRMKEERGGQAGTGRDAAGAPASPALSQESAALYRAEEKFQQGVA
                     ALQQGHEQLALKYLGEAALLAPKQARYRAHYGRALAREKQTRRQAEAELQAAVSLDER
                     NAAYRVMLAELYAAIGLRRRAESELERALKLDPQHAGARRLLSELRRAG"
     gene            2969..3691
                     /locus_tag="VD968_09035"
     CDS             2969..3691
                     /locus_tag="VD968_09035"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HYE14569.1"
                     /translation="MPIVFAESDRVAGEAFMRLAAAADDFEGYEHPHAPRVAAIADAL
                     ASRLGLSRADRTAVAFAALLHDVGEMAMNRDYIKRAGPLTEAERLDLARHPVIGEQEA
                     ARSGADRAAQLFVRWHHEWWNGAGYPDALRGEQVPLGARILRVADAYAALTDARPFRP
                     AGTEAEARKHLTLWAGLEFDPEIVRAFLALEGLPELRSHARAERQREETEELGQEVTD
                     DDSARAEVVHAGEPAGENPWKI"
     gene            3696..4628
                     /locus_tag="VD968_09040"
     CDS             3696..4628
                     /locus_tag="VD968_09040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14570.1"
                     /translation="MTLRHFSGRVPEGWLAFELSILRRLQFRSVANPFAGEAMLDAYL
                     KRWGARVASNDPARWASVRAQARVENSAERLTEEDVGELLEEAYVPRHRLDNTALARW
                     FGETDAWWFDNVRAAAEKLGSPVKRALALNLGMMVGDYALSFDPATRELRQPLSRVFR
                     RLWDAEARPFDNRHRNTSSNKDARDFLSREQAELLFLRLPRPARRPARQSAWAWREEW
                     VRGGDDFWGEFEASREGRLGARAETRRQYLRHLEDLLDAARHVPAWAVAHVENGFLPT
                     EELVESIRRLRRVGTIYTKDFSELTGARAVIVTA"
     gene            complement(4709..7036)
                     /locus_tag="VD968_09045"
     CDS             complement(4709..7036)
                     /locus_tag="VD968_09045"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HYE14571.1"
                     /translation="MSRKSLRGLGEKIAGWLGRVRVWLRGVMPRVAAAAAVLFLLRLL
                     LAGTRAYHETPLGLLGLVTLLAVSATLTYYGLKFLVRLKRALLWRVRRRLVITYLFVG
                     LTPVVLLLVLGLMVALGGSAQAMARVVTVQLSATERQALGSARALADALLAPPAGGDE
                     RAARAWLEERAGLLRSATPGARVAVWRGEAGPAAPSLGEDRPPDYASAPADAATRGVG
                     FDTGEAGEPLPAWLAKREEWSGLSYLPPPRGSRSAFGTPSVRALVRRSSGGRSVAVLV
                     TVPVSRALVEQYRESTGVHVRPFFLGVRGEEGGEGGDVDIKISGQEAGRGSDSAFTLE
                     QDGETREVDFGIDQFGEPIPSFSLSTLSFPYPVFLDATDWTTGDGSPQLSFMVDWSWA
                     AGGRQFWSDAVTGQTIWRLLYSIAVLFLVLELLALFSAAWMTRAVTGTVHKLYRATEF
                     ITAGDFSHRIRTRSRDQLGELAQAFNDMSADIESLLKERVERERLEREIEIAAEVQAQ
                     LFPRSVPALKTAEVTGECRAARGVAGDYYDYIEVAPGLVAFALGDVAGKGISASLVMS
                     NLQAALRAQAALAGEREKVAGMRLAAAGVAPRGGDGQAAPTQAGENPVALMAANINDQ
                     LCRSTDLNRFATLFLALYDDRSRMLRYTNAGHNAPLLVRAGGRVEHLTTGGTVVGAFD
                     WVKYEEGQVELSEGDVLVIFSDGISEALGPSGEEFGEERVRQLAARHRRDTVENIRRT
                     IFDEVDRWSGAAERDDDQTLVILKAVTSDRARAAR"
     gene            complement(7090..>8354)
                     /locus_tag="VD968_09050"
     CDS             complement(7090..>8354)
                     /locus_tag="VD968_09050"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HYE14572.1"
                     /translation="ATVNETTFRVWGAQTGLRAGSVAYDPSTRKATFTPAEPFAYGEL
                     VSAVITRGAATAAGQHLRGFVWEFSVKTLPSGAHFERTAEWEGFGYAVAPADFDGDGD
                     IDLATVQPGGVNVWKNDGAGSFRKHGDYAAPNDNPYRRSTKAADLDNDGDVDLAVGAG
                     GTVVVIKNTGDGTFGEPAFYPVQAGNGPSSVVVADFDADGDLDVASVSTRWVSVLGND
                     GTGAFVVQFSPFAYEVPEFNAVLAAADFDEDGDVDLASGASGAGMSRAAILRNNGAGL
                     FRQEEPSYQIGNSHLDFMCADVDGDRDVDLIQVGAGGRYDGAVNGNDGLGIFGGPGSY
                     GVWGVMGVTADFDGDGRQNLAVFDNDQSYGRPPTLWVMWPHRSHTLDRTPHAAAAADV
                     DGDGDADMIGITDGAVRTVFVLKNGDGP"
BASE COUNT         1254 a         2990 c         2890 g         1220 t
ORIGIN      
        1 tagctggttg aggctcgcct gaagctggaa gccggaggac tgaatctttt cgcagaagcg
       61 gcgctgcgcg ccgtccaggt cttcctggtc tagcaggatt tcggcgaagc cgagtatgga
      121 ggtgagcggc gtgcgcagct catgcgacat gcgttgtagg aagagcgagc ggtagcggcc
      181 tatgcgctga agctctaggt tcgcctcttc gagctcgcgc gtgcggcgct tcagctcgcc
      241 aacgaggctc tcgattctac ggtgctggtc ggccatcgct tcgccgcggc gcgcgttgcc
      301 gatacctatg acgatggccg ggccgatgcg gcgcgccccg ccgagcgccg cccgaagccg
      361 cgcggggtcg gccgacgcga cgaccagcgc gccggcgagc ccgccctgcg cacgtatcgg
      421 gatcgccgcc ccggccttca ggctcgcgcg cgcgaacagc cccccgaggc cctgcggggc
      481 gtcgtcgtca gcgtcgtccg cccagaactg gaactcctcg cccgtgcgct cgacctcggc
      541 ggccagacgc tgcgcggcgc tgtgcgtgct gtcggtgtcc aggtggcggt ggttgaagtc
      601 cgcgcacatg cggaggcgcc cgtcgtcgtc gcgcaggaag gtcgagacgc agcacaagtc
      661 ccagtggcgc aggaggatgt tagtgaaggc ttcgcagatg tcgcgctcgt cgcgcgcttg
      721 gcccatgctg aacgcctgct cgtagaggag gccgacgatc tccgcgctca tcgcctgtag
      781 gtcgctcgac ggaggctctg cggcggccgg cgccgaggct tccggggctt cggctggcgc
      841 ggcggccgag gccggctccc gcccgttccg caccgcctcc ggcgcgcccg cggctgtcat
      901 tgcacgttcg cccattaaga taaaccgagc gcccccggcc cctccaaatc tagctcgggg
      961 acgagggctc atgcttgcaa aaatgtgccc gttttctttg tcgcgaaata taaattgccc
     1021 cccgtctggg tgtcaaacga gaggtcgtca gaatgcgaga gacggaagtc aggacgtgcc
     1081 tgttgccgca gctctattct gactcctgat tcccgcattc tgtcttcccg cttctttctt
     1141 ccggcccgca tttgttattc ttccaaaggg ggcgaaaagg gacagccccc cacttccctc
     1201 atgaacggcc agttgagcga ccacccttta gccgggctca tacacgaaat ctctgaggcg
     1261 cagctctccg gcgcgctgcg cctcgcgcac gagcgcgtga aggccgtcat ttacttcgag
     1321 ggcggcgagc tagtcgccgc gctcacgaac atccgcgctt acaggctcgt cgaggtcgtg
     1381 cggcgcgcgg gcgccgtcgc cgaggagcgg ctcgccggag tggtcaggga agggatgacg
     1441 gacgagcagg caggcatagc gctcgtgcgc tcgggcgcgc tctcgcccaa agagttgaag
     1501 aagcaccagg acaggcaggc cgaggaagtc ctgcgctcgc tgctgcgctg ggaggggggc
     1561 gagtgggagt tcgccccgcg cgtgagaatc gctggcgagt accgctcgcg cgtgagcgcg
     1621 gcgccgctgc tcgccgagtc ggcgcgctca cttccggccg agcgtctgcg cgcgctgatg
     1681 tcgcctgagt cggaatcggt ctcgcccgcg cccgacctgc ccgcgcgcat ggaggcgggc
     1741 cttcagctcc tcccgaccga agcgttcgtg ctcacgcgcg tgcaggggcc gatgagtttg
     1801 gccgagctgc tcgccgtgag cggccagcca gaagacgaga cgctgcgctc cgtctatgtg
     1861 ctcgcgctcg gcgggctgct gcggcgtgag ggccaggcgc gcgcgttctc gcctgaagct
     1921 ctcgcccgcg cgcagtcaca gagccaggcg cccgcggcgg ccgcgccgcc gcagcggcag
     1981 aaggccgcag ccgagcccgc gcccgaggcg gcgcccgcca aggaagagac gccgcaggag
     2041 gcagccacgg ctccgcaaca gcaggcggag cccgagccta aaccgcagcc gggagccgag
     2101 caagacccgc aagccggcat ggaggagctt ttcgagcggt cgcgcgcggc gactcattat
     2161 gaggtgctcg gcgtcacgcg ctcggccaag ccggacgaac tgaagcgcgc ctactactcg
     2221 ctcgccagac gactccaccc cgaccgcttc cggcgcttcg ccgacgacgc catgcggcta
     2281 caggttgacc tcgccttcgc caagatcgcg caggcctacg aggtcttgag cgactcgaag
     2341 ctgcgcgcct cctacgacct gaagctacag tcggcgcaga ggagtgcggc ggcgcgctcg
     2401 gcgcccaaag acatgccgcg catgaaggaa gagcgcgggg gccaggccgg cacggggcgc
     2461 gacgcggcgg gggctcccgc gtcgcccgcg ctctcgcagg agtcggccgc gctctaccgc
     2521 gccgaggaga agttccagca gggcgtcgcc gcgctacagc agggccacga gcagctcgcg
     2581 ctcaaatatt tgggcgaggc cgcgctgctc gcgcccaagc aggcccgcta tcgcgcgcac
     2641 tacgggaggg cgcttgcgcg cgagaagcag acgcgccgcc aggccgaggc ggagcttcag
     2701 gccgccgtct cgctcgacga gaggaacgcc gcctaccgcg tcatgctcgc ggagctttac
     2761 gcggccatcg gcctgcggcg cagggccgag tccgagttgg agcgcgccct caagctcgac
     2821 ccgcagcacg cgggcgcccg ccggctcctc tcggagcttc gccgcgcggg ctgacgagaa
     2881 gttccggctc tcgagttcag ggtgttggcg ggaaaaccgc tctgccggct tggaacttgg
     2941 aacccggaac cttaaactct ctactcttat gccgatagtg tttgccgaga gcgaccgcgt
     3001 cgcgggcgag gcattcatgc gcttggccgc ggcagccgac gacttcgagg gctacgagca
     3061 cccgcacgcc ccgcgcgtgg ccgcgatagc cgacgctttg gcctcgcggc tggggctgtc
     3121 gcgcgccgac cgcacggccg tcgccttcgc cgcgctgctg cacgacgtgg gcgagatggc
     3181 gatgaaccgc gactacatca agcgcgcggg accgctcacc gaggccgagc gcctagacct
     3241 cgcgcgccac cccgtcatcg gcgagcagga ggccgcgcgc tcaggagccg accgcgccgc
     3301 ccagctcttc gtgcgctggc accacgagtg gtggaacggg gccggctacc cggacgcgct
     3361 ccgcggcgag caggtgccgc tcggcgcgcg catactccgc gtcgccgacg cctacgccgc
     3421 gctcaccgac gcgcgcccct tccgccccgc cggcacggag gccgaggcgc gtaagcacct
     3481 cacgctctgg gcagggctgg agttcgaccc cgagatagtc cgcgccttcc tcgcgctcga
     3541 agggcttccc gagctgcgct cgcacgcgcg cgccgagcgc cagcgggagg agactgagga
     3601 gctggggcaa gaagtgactg acgacgactc ggcgcgcgcc gaggtcgtcc acgcgggcga
     3661 gccggcgggc gagaacccct ggaagattta gaccgatgac gctccgacac ttttcgggcc
     3721 gcgtgccgga aggctggctc gccttcgagc tgagcatcct gcgccgcttg cagttccgct
     3781 cggtcgctaa ccccttcgcg ggcgaggcca tgctcgacgc ctacctgaag cgctgggggg
     3841 cgcgcgtagc ctcgaacgac cccgcgcgct gggcgtcggt gcgcgcgcag gcgcgcgtcg
     3901 agaactcggc cgagcgcctg accgaagagg acgtgggcga gctgctcgaa gaggcttacg
     3961 tcccgcgcca ccggctcgac aacacggcgc tcgcgcgctg gttcggcgag acggacgcat
     4021 ggtggttcga caacgtgcgc gccgccgccg agaagctcgg ctcgcccgtg aagcgcgcgc
     4081 tcgccttaaa cctcggcatg atggtcggcg actacgcgct ctccttcgac cctgcgacgc
     4141 gcgagcttcg ccagccgctc tcgcgcgtct tccggcggct gtgggacgcc gaagcccgcc
     4201 ccttcgacaa ccgccaccgc aacaccagct cgaacaagga cgcgcgcgac ttcctgtcgc
     4261 gcgagcaggc ggagcttttg ttcctgcggc tcccgaggcc ggcgcgcagg cccgcgcggc
     4321 agtcggcgtg ggcgtggcgc gaggagtggg tgcgcggcgg cgacgacttc tggggcgagt
     4381 tcgaggcgtc gcgcgaaggg cgcctcggcg cgagggccga gacgcgccgg cagtacctgc
     4441 gccacctcga agacctgctc gacgccgccc gccacgtccc cgcgtgggcc gtcgcgcacg
     4501 tcgagaacgg cttcctcccc accgaggagt tggtcgagtc aatccgccgc ctccgtcgcg
     4561 tcggcaccat ctacaccaaa gacttctcag aactgaccgg cgcacgcgcc gtcatcgtca
     4621 cggcttagaa tcggcggcag gggagctaac aaacagaagg cccggagttt gcgctccggg
     4681 ccttcgtgat tcggtcgcgc ggttcgtctt acctcgcagc ccgcgccctg tcgctcgtca
     4741 ccgctttaag aatgacaagc gtctgatcgt cgtcgcgctc ggcggcgccc gaccacctgt
     4801 caacctcgtc gaatatggtg cgccgtatgt tctcgaccgt gtcgcggcgg tggcgcgcgg
     4861 cgagctggcg cacgcgctcc tcgccgaact cctcgcccga ggggccgagc gcctcgctga
     4921 tgccgtcgga gaagatgacg agcacgtcgc cttcggagag ctcgacctgc ccctcctcgt
     4981 acttcaccca gtcgaatgcg ccgaccacgg tgccgcccgt cgtgagatgc tcgacgcgcc
     5041 cgcccgcgcg cacaagcagc ggggcgttgt ggcccgcgtt cgtgtagcgg agcatgcgcg
     5101 agcggtcgtc gtagagcgcg aggaagagag tggcgaagcg gttgaggtct gtgctgcggc
     5161 agagttggtc gttgatgttg gcggccatca gggcgacggg gttttcgccc gcctgcgtcg
     5221 gcgcggcctg cccgtcgccg ccgcgcggcg cgacgccagc cgcggccagc cgcatccccg
     5281 ccaccttctc cctctcgccc gcgagcgccg cctgcgcgcg cagcgccgcc tgaaggttcg
     5341 acatgacgag cgaggccgag attcccttcc ccgccacgtc gccgagcgcg aaggctacga
     5401 gccccggcgc gacctctatg tagtcgtagt agtcgcccgc gacgccgcgc gcggcgcggc
     5461 actcgcccgt cacctccgca gtcttcaagg cggggacgct ccgcgggaag agctgcgcct
     5521 gcacctcggc ggcgatctct atctcgcgct cgagacgctc gcgctcgacg cgctctttca
     5581 ggagcgactc gatgtcggcc gacatgtcgt tgaaggcttg ggccagctcg cccaactggt
     5641 cgcgcgagcg ggtgcgtatg cggtgggaga agtcgccggc cgtgatgaac tccgtcgcgc
     5701 ggtatagctt gtggactgtg ccggtgacgg ccctcgtcat ccacgcggcg gagaagagcg
     5761 cgagcaactc gaggacgagg aacaggacgg cgatgctgta gagcagccgc cagatggtct
     5821 gccccgttac ggcgtcgctc cagaactgcc gcccgcccgc ggcccaggac cagtcaacca
     5881 tgaaggagag ctgtggcgag ccgtcgccgg tcgtccagtc cgtcgcgtcg aggaagacgg
     5941 ggtaggggaa gctgagcgta gagagcgaga acgaaggtat cggctcgccg aactggtcta
     6001 tgccgaagtc aacctcgcga gtctcgccgt cctgctctaa cgtgaacgcg ctgtcggagc
     6061 cgcggcccgc ctcctgcccg gagattttta tgtcaacgtc gccgccctcg cccccctcct
     6121 cgccgcgcac gccgaggaag aaggggcgga cgtgcacgcc cgtgctctcg cggtactgct
     6181 cgacgagagc gcggctgacg ggcactgtga cgagcaccgc gaccgagcgg ccgcctgaag
     6241 agcggcgcac gagcgcgcgc accgaaggcg tgccgaaggc gctgcgcgag ccccggggcg
     6301 gcggcaggta cgagaggcca gaccattcct cccgcttcgc gagccacgcg ggcaggggct
     6361 cgccggcctc gcccgtgtcg aagccgacgc cgcgcgtcgc cgcgtcggcc ggcgccgagg
     6421 cgtaatcggg cggcctgtct tcgccgaggc tcggagcggc ggggcctgcc tcgccgcgcc
     6481 agacggcgac gcgcgcgccc ggcgtcgcag acctcagaag cccggccctc tcttcgagcc
     6541 acgcgcgcgc cgcccgctcg tcgccgcccg ccggcggcgc cagcagcgcg tcggccagag
     6601 cgcgcgccga gccgagagcc tgccgctccg tcgcgctcag ctgcacggtc acgacgcgcg
     6661 ccatcgcctg cgcggagccg ccgagcgcca ccatcagccc gagcacgagc aggagcacga
     6721 ctggcgtcaa gcccacaaac agataggtga tgaccagccg ccggcgcact cgccacagca
     6781 gcgcccgctt gaggcgcacg aggaatttca ggccgtagta ggtgagcgtg gccgagacgg
     6841 cgaggagggt gacgagcccg agcagcccga gcggcgtctc gtggtaggcg cgcgtccccg
     6901 cgagcagcag gcgcagcagg aagagcacgg ccgccgccgc cgccacgcga ggcatcacgc
     6961 cccgcagcca cacgcgcacg cgccccagcc accccgcaat cttctcgccc aagccccgca
     7021 aactcttccg gctcatccga ctctccccgt cgcccgagta atcacctgct caaacaagtc
     7081 cctagcatat tacgggccgt ccccgttctt aaggacgaag acggtgcgaa cggcgccgtc
     7141 cgtgatccct atcatgtccg cgtcgccgtc gccgtcaacg tccgcggccg ccgcggcgtg
     7201 cggggtgcgg tcgagcgtgt gcgagcggtg cggccacatg acccagagcg tcggcgggcg
     7261 cccgtatgat tggtcgttgt cgaagacggc gaggttctgt cggccgtcac catcaaaatc
     7321 ggctgtgacc cccatcacgc cccagacgcc gtagctgccc ggcccgccga aaatcccgag
     7381 gccgtcgttg ccattcacgg cgccgtcgta ccttccgccc gctcccacct gtatcaggtc
     7441 aacgtcgcgg tcgccgtcca cgtcggcgca catgaagtcg agatgggagt tgcctatctg
     7501 gtaggacggc tcctcctggc ggaagagccc cgcgccgttg ttcctcaaga tggcggcccg
     7561 gctcatgccc gcgccgctcg ccccgctcgc taggtctacg tcgccgtcct cgtcgaagtc
     7621 ggcggccgcg agcacggcgt tgaactccgg cacctcgtag gcgaaggggc tgaactgcac
     7681 tacgaaggcg cccgtcccgt cgttcccgag cacggagacc cagcgcgtgc tgaccgaggc
     7741 cacgtccagg tcgccgtccg cgtcgaaatc ggccacgacg acggacgacg ggccgttgcc
     7801 cgcctgcacc gggtagaagg ccggctcgcc gaaggtgccg tcgcccgtgt tcttgatgac
     7861 gacgacggtg ccgcctgcgc cgacggccag gtcaacgtcg ccgtcgttgt cgaggtcggc
     7921 ggccttcgtt gaccttcggt aggggttgtc gttcggcgcc gcgtagtcgc cgtgcttccg
     7981 gaacgagccg gcgccgtcgt tcttccagac gttgacgccg ccgggctgca cggtcgccaa
     8041 gtctatgtcg ccgtcgccgt cgaagtccgc gggggctacg gcgtaaccaa acccctccca
     8101 ctcggccgtc cgctcgaaat gcgcgcccga cggcagggtc ttaacgctga actcccaaac
     8161 gaagccgcgc aggtgctggc ccgccgccgt tgccgcgccg cgcgttatga cggccgagac
     8221 cagttcgccg taggcgaagg gctcggccgg cgtgaaggtg gccttgcgcg tcgaggggtc
     8281 gtaggcgacg gagcccgcgc gcaggcccgt ctgcgcgccc cagacgcgga acgtcgtctc
     8341 gttcacggtc gccg
//
LOCUS       DASPKR010000332         5392 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_562556, whole genome shotgun sequence.
ACCESSION   DASPKR010000332 DASPKR010000000
VERSION     DASPKR010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5392)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5392
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_562556"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..736)
                     /locus_tag="VD968_09055"
     CDS             complement(<1..736)
                     /locus_tag="VD968_09055"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYE14573.1"
                     /translation="MRLLILGGTKFLGRHLVDAALGRGARVTIFNRGRHDPGPFPQVE
                     WLRGDRDGGLDSLRGREWDAAVDTSGYVPRVVGASAELLAGSVGLYVFVSSISVYGDF
                     SRPVDEDSPTATMPDETVEEITGETYGPLKALSERAAERSMPGRTLVIRPGLIVGPHD
                     PTVRFSYWTARVARGGEVLAPGRPGKQVQFIDARDLSDWIVRVAEERRTGVFNATGPE
                     RKLTMGEFLEECRAVSGSDASFTWVGE"
     gene            complement(744..1769)
                     /locus_tag="VD968_09060"
     CDS             complement(744..1769)
                     /locus_tag="VD968_09060"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HYE14574.1"
                     /translation="MLEEIAQQPEALARTVAEERAKVERLGRFLRARDIDQIVLVARG
                     SSDNAALFGRYLLEIRTGIPVSLAAPSVHTLYGVRLKLSRALVVGVSQSGEGEDINLV
                     LANARECGAYTVGITNEAESSMTGVVEETLLMHGGRERSVAATKTYTGQLMHFYMLAE
                     ALADGGEPLGYEAVPEFAARALELRAAVESTVERYVFMENCVVVGRGLVYANAFEMAL
                     KLMETCYVVAERFSSADFLHGPLAIVERHFPIFVFAPPGPTLPGVRELLGRLRELRAD
                     TLSITADEEAAALSTRSLRLPAEINELLAVIPYIIPAQLFAALLADAKGLDPDAPRSL
                     AKVTRTL"
     gene            1908..4043
                     /locus_tag="VD968_09065"
     CDS             1908..4043
                     /locus_tag="VD968_09065"
                     /inference="COORDINATES: protein motif:HMM:NF012931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 20 zincin-like fold
                     domain-containing protein"
                     /protein_id="HYE14575.1"
                     /translation="MQITQKGSRPRRGRVAAALLLLLAAPLLLAAPAARAQAATPRVQ
                     VIPRPKQLGTTEETFKLTRRARVVLADKNSGEDRFAAQDFLDDLRETAGLTLKLTTSR
                     GAPQILVGPLSNERVREALGRAGLVEPPGFADEGYMLSVSASEVVVGGKTAAGTFYGL
                     QTLKQLVRGEGESAYAQGVRITDWPTMRWRAVSDDISRGPVPTVEYVKRQLRTFASFK
                     LNMHSFYMEHVFGSSSHPLIAPEGGALRAEEIRELVEYARRYHVELVPEQQTFGHLHK
                     ALKFEKYNELAEVPYGDMLSPQAEGSYKLIADWYEEIAALFPGRFFHVGADETFELGQ
                     GRSREAVRERGVGAVYFEHLRRVREILKPHGRRLMFWGDIALSHPELVPSVPRDMIAM
                     NWDYSPRPSYEARINIFKNAGLEQFVCPAVHGWSQIFPNTEVASVNIVNFARDGQRAG
                     VLGLMNTQWDDDGETLFEMSWHGIALGAAASWQDAPVDVSEFDRDFDWAFFRHDGEQL
                     TKAARALGSVNAVLDFGPSNALFWRDPFTDDFQEEVVRPREEKTRKVRLMVEEAEESL
                     IRERPRARRNLQAIDSMRFAARRFDHMARRMQIVAQFSRDYWDAYLHLADRGKAHRLR
                     YYSSSIYSWLREMAEELSELRAAYREQWLRENRPYWLDSVLARYDLAISRWLAREKQL
                     QEALRGYERDSTLPPPSEFGLGSRPDGER"
     gene            4046..>5392
                     /locus_tag="VD968_09070"
     CDS             4046..>5392
                     /locus_tag="VD968_09070"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 protein"
                     /protein_id="HYE14576.1"
                     /translation="MTRTLIGVSFVAALVLLAGEGAARRAESGGAGSAEQAWVEETLK
                     GMSLRERAGQLVMRAVQADVAGDRKAELKRQLAELALGGVIVRGGSPKELAALTNELQ
                     TTARLPLFVAADYERGLRMQMKSGTPFTNNMGVAAAGDTRAAYEQAKVTAMEARAVGV
                     NWLFGPVADLNNNPDNPVINVRSFGESPRRVGEFVAAAVRGARDGGALSTAKHFPGHG
                     DTAVDSHIGLATIRADRARLDRVELVPFRAAINAGVGAVMTAHVALPQVTGDELPASL
                     SPKVTTDLLRRELKFDGLVVTDSLGMGAITRGFPGGEAAARAIKAGADVALGSPDPKL
                     AVEAIERAVRAGEIPEGRLNESVRRVLRAKYRLGLANVRTVDAAAAAGAIERPEAVET
                     ARRVAEKSITLLRNGGGLLPLSRERAARALFVVIAADEDPEEGRTFQPEVERRTPEA"
BASE COUNT          884 a         1878 c         1840 g          790 t
ORIGIN      
        1 cctccccgac ccacgtaaag ctcgcgtcgc tccccgacac ggcccggcac tcttccagga
       61 actcgcccat cgtcagcttg cgctcaggcc cggtcgcatt gaaaacaccc gtgcgccgct
      121 cctcagccac tcgcactatc cagtccgaga ggtcgcgggc gtcaatgaac tgaacctgct
      181 tgccggggcg gccgggcgcg agaacttcgc cgccgcgggc gacgcgcgcc gtccagtagg
      241 agaagcgaac ggtcgggtcg tgcgggccga cgatgaggcc ggggcggatg acgagcgtgc
      301 gacccggcat ggagcgctcg gcagcgcgct ccgacagggc cttgagcggg ccgtaggtct
      361 cgcccgttat ctcctcgacc gtctcgtccg gcatggtcgc cgtgggcgaa tcttcgtcca
      421 cgggccggct gaagtctccg taaacagaga ttgacgagac gaagacgtag agcccgaccg
      481 agcctgcgag caactcggca gacgcgccga cgacgcgcgg cacgtagccg ctcgtgtcca
      541 cggccgcgtc ccactcgcga ccgcgcaggg agtctagccc gccgtcgcgg tcgccgcgca
      601 gccactcgac ttgcgggaaa ggcccggggt cgtgccgccc gcggttgaat atcgtcacgc
      661 gcgcccctcg cccgagcgcc gcgtcaacga ggtggcgacc cagaaacttc gtcccgccga
      721 gaatcaacag cctcacgtgc acctcagagc gtgcgggtga ccttcgcgag cgagcgaggg
      781 gcgtccgggt cgagcccctt cgcgtcggcg agcagagcgg cgaagagttg cgcggggatt
      841 atgtagggga tgacggccag caattcgttt atctcggcgg gtaggcggag ggagcgcgtt
      901 gacagcgccg ccgcctcctc gtccgcggtg atcgagagcg tgtcggcgcg aagctcgcgc
      961 aggcggccga gcagctcgcg cacgccgggc agcgtggggc cgggcggggc gaagacgaag
     1021 atggggaagt gacgctcgac aatcgccagc gggccgtgca ggaagtcggc cgacgagaag
     1081 cgctcggcga cgacgtagca tgtctccatc agcttcaagg ccatctcgaa ggcgttcgca
     1141 tagacgagcc cgcggccgac gacgacgcag ttctccatga agacgtagcg ctcgaccgtg
     1201 ctctcgacgg ccgcgcggag ctcgagcgcg cgcgcggcga actccggcac ggcctcgtag
     1261 ccgagcggct cgccgccgtc ggcgagcgcc tcggccaaca tgtagaagtg catgagctgg
     1321 cccgtgtagg tcttggtagc cgccacggag cgctcgcgcc cgccgtgcat cagcagggtc
     1381 tcttccacga cgcccgtcat cgaagactcg gcctcgttcg tgatgccgac cgtgtaggcg
     1441 ccgcactcgc gcgcgtttgc gagcacgagg ttgatgtcct cgccctcgcc ggactgcgag
     1501 acgcccacga ctagagcgcg ggagagcttg aggcgcacgc cgtagagcgt gtggacggaa
     1561 ggcgcggcga gagagacggg gatgcctgtg cgaatctcca ggaggtatcg gccgaagagc
     1621 gcggcgttgt cggacgagcc gcgcgcgacg agcacgatct ggtcaatgtc gcgcgcgcgc
     1681 aggaagcgac ccagccgctc gaccttcgcg cgctcctccg cgacggttcg cgccagcgcc
     1741 tccggctgct gcgctatctc ctcaagcatc agtgacactg gttcggctcg cctccgtcaa
     1801 ccttcggtcg tatcttgcgc gggcgcgttg acacccctct gccgtcatgc taattgtcgg
     1861 cgcaagtgct cgcgcgccca ttatccacga aggcgactgc cgtttaaatg caaatcacgc
     1921 aaaagggctc ccggccccgg cgggggagag tcgcggcggc gctcctgctg ctgctcgccg
     1981 cgccgctcct gctcgcggcg cccgccgccc gcgcccaggc ggcgacgccg cgcgtgcagg
     2041 tcatcccgcg gccgaagcag ttggggacta cagaagagac cttcaagctc acgcgccgcg
     2101 cccgcgtcgt actcgccgac aaaaattcag gcgaagaccg cttcgccgca caggacttcc
     2161 tcgacgacct acgcgagacg gctggcctta cgctcaaact aacgacgagc cgcggcgccc
     2221 ctcaaatcct cgtcgggccg ctctcgaacg agcgcgtgcg cgaggcgctc ggccgcgccg
     2281 gcctcgtcga gccgcccggc ttcgccgacg aaggctacat gctgagcgtc tccgcctcgg
     2341 aggtcgtcgt cggaggcaag accgccgcgg ggacgttcta cggccttcag accctgaagc
     2401 agctcgtgcg cggcgagggc gagtcggcct acgcgcaagg ggtgaggatt accgactggc
     2461 ccacgatgcg ttggcgcgca gtttccgacg acataagccg cggccccgtc cccacggtcg
     2521 agtacgtcaa gcggcagttg cgcaccttcg cctccttcaa gctcaacatg cacagcttct
     2581 acatggagca cgtcttcggc tcctcttcgc acccgctcat cgcgcccgag ggcggggcgc
     2641 taagggccga ggagattcgg gagcttgttg agtacgcccg ccgctaccac gtcgagctcg
     2701 tccccgagca gcagaccttc ggccacctac acaaggcgct caagttcgag aagtataacg
     2761 agctcgccga agtgccttac ggcgacatgc tctcgccgca ggccgagggc agctacaagc
     2821 tcatcgcaga ctggtacgag gagatcgccg cactcttccc cggcaggttc ttccacgtcg
     2881 gcgccgacga gacgttcgag ctcggccagg gccgaagccg cgaggccgtg cgcgagcggg
     2941 gcgtcggcgc cgtctatttc gagcacctgc ggcgcgtccg cgagattcta aagccgcacg
     3001 gccgccgtct catgttctgg ggcgacatcg cgctcagcca cccggagctt gtccctagcg
     3061 tcccgcgcga catgatagcg atgaactggg actactcgcc gcggccgagc tacgaggcgc
     3121 gcatcaatat cttcaagaac gcgggcctcg aacagttcgt ctgccccgcc gtgcacggct
     3181 ggagccagat attcccgaac accgaggtcg cctcggtcaa catcgtgaac ttcgcacgcg
     3241 acggccagcg cgcgggcgtg ctcggattga tgaacactca gtgggacgac gacggcgaga
     3301 ctctcttcga gatgtcctgg cacgggatag cgctcggggc ggcggcctcc tggcaggacg
     3361 cccccgtgga cgtttcggag ttcgaccgcg acttcgactg ggccttcttc cgccacgacg
     3421 gcgagcagtt gacgaaagcc gcgcgcgctc tggggagcgt caacgccgtc cttgacttcg
     3481 gcccgagcaa cgctctcttc tggcgcgacc ccttcacgga cgacttccag gaggaggtcg
     3541 tgcgcccgcg ggaggagaag acgcgcaagg tccggctcat ggtcgaggag gccgaggagt
     3601 ctctgattcg cgagcggccg cgcgcgcgcc gcaaccttca ggcgattgac tcgatgcgct
     3661 tcgccgcccg ccgcttcgac cacatggcgc gccgcatgca gatcgtcgcg cagttcagcc
     3721 gcgactactg ggacgcctac ctgcacctcg ccgaccgcgg gaaggcgcac aggctccgtt
     3781 actattcgag ctcgatttat agctggctcc gtgagatggc cgaggagctt tcggagcttc
     3841 gcgcggcgta ccgcgagcag tggcttcgcg agaacaggcc atactggctc gacagcgttc
     3901 tagcgcgcta tgatctcgcg atctcgcgct ggctcgcgcg cgagaagcag ttgcaggagg
     3961 ctctgcgcgg ctacgagcgc gactcgacgc tcccgccgcc ctcggagttc ggcctgggct
     4021 cccggcccga cggggagaga tgagcatgac gagaacgctt atcggcgtct ctttcgtcgc
     4081 ggccctcgta cttctcgcgg gcgaaggcgc cgcgcgcagg gcggagagcg gcggcgccgg
     4141 ctcggccgag caggcttggg tcgaagagac tctaaagggc atgagcttgc gcgagcgcgc
     4201 gggccagctc gtgatgaggg ccgtgcaggc cgacgttgcg ggcgaccgta aggcggagct
     4261 taaaaggcag ctcgcggagc tcgcgctcgg cggcgtcatc gtccgcggcg ggagcccgaa
     4321 ggagcttgca gcgctcacga acgagttgca gacgacggcg aggctcccgc tcttcgtcgc
     4381 ggccgactac gagcgcggcc tccgcatgca gatgaagagc ggcacgcctt tcacgaacaa
     4441 catgggcgtc gcagccgcgg gcgacacgcg cgccgcctac gagcaggcga aggtgacggc
     4501 gatggaggcg cgcgccgtcg gcgtcaactg gctcttcggc cccgtcgccg acctgaacaa
     4561 caaccccgat aaccccgtca taaacgtccg cagcttcggc gagtcgccgc gccgcgtcgg
     4621 cgagttcgtc gccgcggccg tgcgcggcgc gcgcgacggc ggcgcgctct cgaccgccaa
     4681 gcacttcccc ggccacggcg acacggcagt tgattcgcac atcggcctcg ccaccatacg
     4741 cgccgaccgc gcgcgcctcg accgcgtcga gctcgtcccc ttccgcgcgg ccattaacgc
     4801 gggcgtcggg gcagtgatga ccgcgcacgt cgcgctcccg caagtcacgg gcgacgagct
     4861 gccggcctcg ctctcgccga aggtgacgac cgacctgctc aggcgcgagc ttaagttcga
     4921 cggcctcgtc gtcaccgact cgctcggcat gggcgcgatc acgcgcggct tccccggcgg
     4981 cgaggccgcg gcccgcgcga taaaggccgg cgcagacgtt gcgctcggct cccccgaccc
     5041 gaagctcgcc gtcgaggcca tcgagcgcgc agtccgcgcg ggcgagattc ccgaggggcg
     5101 tctgaacgag agcgtgcgcc gggtgctccg cgcgaagtac aggctcggcc tcgcgaacgt
     5161 gaggacggtt gacgcggccg ccgccgcggg cgcaatcgag cggcccgagg ccgtggagac
     5221 cgcgcgccgc gttgcggaaa agtcaataac tcttctgcgc aacggcggcg gcctgctccc
     5281 cttgagccgc gaacgagcgg cgcgcgccct tttcgtcgta atcgcggcgg acgaagaccc
     5341 ggaggaggga cgcacgttcc agcccgaggt cgagcgccga acgcccgaag cg
//
LOCUS       DASPKR010000333         4188 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1595947, whole genome shotgun sequence.
ACCESSION   DASPKR010000333 DASPKR010000000
VERSION     DASPKR010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4188)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4188
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1595947"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..697)
                     /locus_tag="VD968_09075"
     CDS             complement(143..697)
                     /locus_tag="VD968_09075"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA];
                     GO_process: GO:0009146 - purine nucleoside triphosphate
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="non-canonical purine NTP pyrophosphatase"
                     /protein_id="HYE14577.1"
                     /translation="MPEIILITQSADKVEEFSRLLGRAVSHRHLDLPEIQSLDPAEVA
                     AHKAKAAFDLLGGGPVMVEDTGLAVRAWNGLPGALVKWFLRGVGPEGLCRMAAALEGG
                     AEAVAETAIAVCDGGGGVRVFSGKVEGVIAPRPSGSGGFGWDSVFKPAGEARTFAEMS
                     PEEKDAYSMRRLALENLRANYPFT"
     gene            complement(721..1671)
                     /locus_tag="VD968_09080"
     CDS             complement(721..1671)
                     /locus_tag="VD968_09080"
                     /inference="COORDINATES: protein motif:HMM:NF025053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HYE14578.1"
                     /translation="MLVELHAKTHVGRIRSGNEDNFLVLDLNTSKAWTGTNGDEPPEE
                     MRRFDVGERGVVLVVSDGMGGALAGDVASRMAVESVKEMLTGGSGEEMGDDDGECEPG
                     VQLVDCLRAATEYANLAIHRRSQEDPRCSGMGATLTGAAITRDGLSFLQVGDSRGYII
                     RGGRIKLATKDQSLVQQLVDVGQISEMEAETHMFRNVILQALGAQADLAPVTGRVKIC
                     RDDIVMLCSDGLSGKLRAEDMLQIISESDGDLALACQRLVDEANERGGEDNITVVLAH
                     VTGDELPPPGSSDRITVELPPPDGDDTLNSREDDTTERLR"
     gene            complement(1747..2892)
                     /locus_tag="VD968_09085"
     CDS             complement(1747..2892)
                     /locus_tag="VD968_09085"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: protein motif:HMM:NF005871.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HYE14579.1"
                     /translation="MGFATTAIHAGNEPDPLTGSVTVPIYQTSTYAQEALGSPRNGYE
                     YARTQNPTRTAVERNIAALEGGRFGFAFASGMAAIDTTLRLIKAGEHVVVSDNTYGGT
                     FRLFSRVLSNYGIEFTYVDTTEPLNVEAALRDNTKMVFLETPTNPVMMVTDLKAVSDI
                     AHAAGARVVCDNTFMSPYLQRPMEFGVDIVVHSTTKYLNGHSDSVGGAVVLDDEKDAE
                     QLAFLQNAAGAILSPFDSWLTLRGTKTLAVRMERHDSTGRRVAAFLEEHPKVRKLYYP
                     GSLSHAQHELAKRQQRGFGGMVSFDVGSLENARAVLESVRLCTLAESLGGVETLISHP
                     ETMTHASVLPETRARLGITGGLVRISVGLEDPEDIIADLDQALDKIK"
     gene            complement(2899..3864)
                     /locus_tag="VD968_09090"
     CDS             complement(2899..3864)
                     /locus_tag="VD968_09090"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HYE14580.1"
                     /translation="MVSQALSDSGGRAARTPPAVESILELVGGTPLLHLARFAPPPHA
                     AVFAKLEYMNPGGSVKDRAALGMILDAERRGVLKPGSTVIEPTAGNTGIGLALVGVAR
                     GYKVVLCVPEGYSREKMKIMEALGGRVEYVPAEEGMEGAVRRARELAAEIKDSFIPQQ
                     FENPANPCFHEETTAREIIEQTDGRIDAVVLGCGSAGSFTGITRAIKKVRPDVFCALV
                     EPKGSILGGGPPGFYKLEGIGQREFIPPNLDRDMPDEVIAVSDAEAFATVRELARTEG
                     VLGGGSTGAAAAAARRVAERLGQGKRVVTLFPDGAERYMSQGIFD"
     gene            4000..>4188
                     /locus_tag="VD968_09095"
     CDS             4000..>4188
                     /locus_tag="VD968_09095"
                     /inference="COORDINATES: protein motif:HMM:NF014409.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14581.1"
                     /translation="MNHTGLPVQNPTVVAIIPARYSSSRLPGKPLLEIAGRPMVAHVC
                     ERALASRTVSRAVVATDDE"
BASE COUNT          625 a         1436 c         1409 g          718 t
ORIGIN      
        1 gtggagctgc gcttctacga cacgccggtc agcctgccca acaccaatta cgtcacgctc
       61 gtaaatctcg cggccgagaa ggagtcggcc cgccgcttct ccgagcggga cggggccgcc
      121 gcgcgcggcg aggccgccgg cctcaagtga aggggtagtt ggctcgcagg ttctcgagcg
      181 cgaggcgccg catcgagtag gcgtccttct cctcggggct catctccgcg aacgtccgcg
      241 cctcgcccgc gggcttgaag acggagtccc agccgaagcc gcccgacccc gaagggcgcg
      301 gcgctatcac cccctcgacc ttgccggaga agacccgcac cccgccgccg ccgtcgcaga
      361 ccgcgatggc agtctcggct accgcctcgg caccgccttc aagcgccgcc gccatcctgc
      421 acaagccttc cggccccacg ccgcgcagga accacttaac cagagcgccg ggcagaccgt
      481 tccacgcgcg aaccgcgagc cccgtgtcct ctaccatgac ggggccgccg ccgagaaggt
      541 cgaaggcggc cttggccttg tgcgcggcca cctccgcggg gtcgagcgac tggatttcgg
      601 gtaagtctaa atgacggtga gagacggcgc ggccgagaag gcgcgagaac tcctcgacct
      661 tgtcggctga ctgcgttatc aggattatct cgggcaaggc ggcgagcctc cgcgcgctct
      721 tcagcggagg cgctcggtgg tgtcgtcttc gcggctgttg agcgtgtcgt cgccgtcggg
      781 cgggggcagc tcgactgtta tgcggtcgga ggagccgggc gggggcagtt cgtcgcccgt
      841 gacgtgcgcg aggacgaccg tgatgttgtc ttcgccgccg cgctcgttgg cctcgtcaac
      901 gaggcgctgg caggcgagcg cgaggtctcc gtccgactcc gagatgattt gcagcatgtc
      961 ctccgcgcgc agtttccccg agaggccgtc gctgcaaagc atcacgatgt cgtcgcggca
     1021 gattttcacg cggccggtga cgggcgctag atcggcctgc gcgcccaggg cctgtaggat
     1081 gacgttgcgg aacatgtgag tctccgcctc catctcgctt atctggccca cgtcaacgag
     1141 ctgctgcacg agtgactggt ctttggtcgc gagcttgatg cggccgccac ggatgatgta
     1201 gccgcggctg tcgccgacct gcaaaaaact caggccgtcg cgcgtgatcg cggcgcccgt
     1261 cagagtggcg cccatcccgg agcagcgcgg gtcttcctgg ctcctgcggt gtatggcgag
     1321 gtttgcgtac tcggtggcgg cgcgcaggca gtcaactagc tgcacgcccg gctcgcactc
     1381 cccgtcgtcg tcgcccatct cctcgccgga gccgcccgtg agcatctctt tgacggactc
     1441 gacggccatg cggctggcga cgtcgcccgc gagcgcgccg cccatcccgt cggagacgac
     1501 gagcaccacg ccgcgctcgc ccacatcgaa gcggcgcatc tcctcgggcg gctcgtcgcc
     1561 gttcgtcccc gtccacgcct tcgacgtgtt gaggtcgagc acgaggaagt tgtcctcgtt
     1621 gcccgagcgt atgcggccga cgtgcgtctt ggcgtgcagc tctacgagca taagaagcag
     1681 tgcgagcggc gagcgagaag tgacgagcgg gtggattcta cccggccgcc cgccgcttgt
     1741 cacccgtcac ttaattttgt cgagcgcctg gtcgagatcg gcgatgatgt cttcggggtc
     1801 ttcgaggccg accgagatgc gcacgagccc gcccgtgatg ccgagccggg cgcgcgtctc
     1861 cggcaagacg gaggcgtgcg tcatcgtctc cgggtgggag atgagcgtct cgacgccgcc
     1921 gaggctctcc gcgagcgtgc aaaggcggac ggattctagc acagcgcgcg cgttttccag
     1981 cgaccccacg tcgaacgata ccatcccgcc gaagcccctc tgctgccgct tcgccagctc
     2041 gtgctgcgcg tgcgaaagcg accccggata gtagagcttc cgcaccttcg ggtgctcttc
     2101 gaggaaggcg gcgacgcgcc ggcccgtcga gtcgtgccgc tccatcctga ccgccagcgt
     2161 cttcgtcccg cgcagcgtca gccacgagtc gaagggcgac agaatcgcgc cggccgcgtt
     2221 ctgcaggaag gcgagctgct cggcgtcttt ttcgtcgtcg aggacgacgg cgccgccgac
     2281 gctgtccgag tggccgttca ggtacttcgt cgtcgagtgg acgacgatgt ccacgccgaa
     2341 ctccatcggg cgctgtaggt agggcgacat gaaggtgttg tcgcacacga cgcgcgcgcc
     2401 ggccgcgtgg gcgatgtcgg agacggcctt caggtccgtc accatcatca cggggttcgt
     2461 cggcgtctcc aggaacacca tcttcgtgtt gtcgcgcagg gcggcctcga cgttcagggg
     2521 ctcggtcgtg tcaacgtatg tgaactcgat gccgtagttc gagagcacgc ggctgaagag
     2581 tcggaacgtc ccgccgtagg tgttgtcgga gaccacgacg tgctcgccgg ccttgatcag
     2641 cctgagcgtc gtgtcaatcg ccgccatccc cgaggcgaag gcgaagccga agcgcccgcc
     2701 ctcgagcgcc gcgatgttgc gctcgacggc cgtgcgcgtc gggttctgcg tgcgcgcgta
     2761 ctcgtagccg ttgcgcgggc tgcccagggc ctcctgcgcg taggtcgagg tctggtagat
     2821 ggggacggtc acggagcccg tcaaggggtc gggctcgttg cccgcgtgta tggctgtcgt
     2881 tgcgaaaccc ataatttatt agtcgaaaat tccctggctc atgtagcgct cggccccgtc
     2941 ggggaagagc gtgacgaccc gcttgccctg gccgaggcgt tcggcgactc tgcgggccgc
     3001 ggccgccgcc gcgcccgtcg agccgccgcc cagaacccct tcggttcgcg caagctcgcg
     3061 cacggtcgcg aaggcttcag cgtccgagac ggctatcacc tcgtcgggca tgtctcggtc
     3121 gaggttgggc ggtatgaact cgcgctggcc tatgccttcg agcttgtaga agccgggcgg
     3181 cccgccgccc agtatggagc ccttcggctc gacgagcgcg cagaacacgt ccggccgcac
     3241 cttctttatc gcgcgcgtta tccctgtgaa cgagccggcc gagccgcaac ccaggacgac
     3301 ggcgtcaatg cgcccgtccg tctgctcgat aatctcgcgg gcggtggtct cctcgtggaa
     3361 gcaggggttg gcggggttct cgaactgctg cgggatgaag ctgtctttaa tctccgcggc
     3421 cagctcgcgc gctcgtcgca cggcgccctc catgccctcc tcggccggca cgtactcgac
     3481 gcgaccgccg agcgcctcca ttatcttcat cttctcgcgc gagtagccct cggggacgca
     3541 gaggacgacc ttgtagccgc gcgccacgcc tacgagcgcg agcccgatgc ctgtgttccc
     3601 ggccgtcggc tctatgacgg tcgagccggg cttcaagacg ccacgccgct ctgcgtccaa
     3661 aatcatgccg agcgcggcgc ggtctttcac ggagccgccg gggttcatgt attcgagctt
     3721 tgcgaagacg gccgcgtgcg ggggcggggc gaagcgcgcg agatgcagca gcggcgtgcc
     3781 gcccaccagc tcgaggatgc tctcgacggc gggcggagta cgcgccgcac ggccgcctga
     3841 gtctgagagt gcctgcgaaa ccataagaga tgcgctgtcg ggcgaatggt agcccagcgc
     3901 gtcggcgggt gacaagcggc gggaaagacg gcgcgccgcg cgccctcgcg caacataagg
     3961 cttgtaaccc gcggccgttt tcggctattt tgtactcccg tgaatcacac gggcctcccg
     4021 gttcaaaacc ccacggtcgt cgcaataatc ccagcgcgct actcttcgag ccgcctgccc
     4081 ggaaagccgc tcctcgaaat cgctggccgc ccgatggtcg cgcacgtctg cgagcgcgcg
     4141 ctcgcctcac gcaccgtctc gcgcgccgtc gtcgccaccg acgacgag
//
LOCUS       DASPKR010000334         3750 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_302846, whole genome shotgun sequence.
ACCESSION   DASPKR010000334 DASPKR010000000
VERSION     DASPKR010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3750)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3750
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302846"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..489
                     /locus_tag="VD968_09100"
     CDS             <1..489
                     /locus_tag="VD968_09100"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HYE14582.1"
                     /translation="DEVNRLFSSNFMRSFGDEGIARGAWAPNVDIYEGKDEIVLEAEL
                     PGMNREDFEVSIENNVLTLRGERRFEKKDEGDNYHRVERSYGAFTRSFTLPQTISPDG
                     ATAEYKNGVLRVALRKREEVKARRIEIAGEGAETSTPKTIEAQAQSADASGEAKSKTA
                     GR"
     gene            571..3171
                     /gene="clpB"
                     /locus_tag="VD968_09105"
     CDS             571..3171
                     /gene="clpB"
                     /locus_tag="VD968_09105"
                     /inference="COORDINATES: protein motif:HMM:TIGR03346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HYE14583.1"
                     /translation="MRLDRFTLRGQEAIQSAIEMAERNEHQQVEPEHILLAMIEQAEG
                     IVRPVLGKLGANVQVIVNDVEAAVGRFPKVQGGQQYFSPRTTQIFQAAQKQAEKMQDE
                     YISTEHLLLAIADEKDGASGRILRQHGVNREDLSKVVEQTRGGVRVTDQNAEANYQAL
                     ARYAKDLTELARQGKLDPVIGRDDEIRRTVQVLSRRTKNNPVLIGEPGVGKTAIVEGL
                     AQRIVSGDVPETLRNKRLVALDLGSMLAGAKYRGEFEDRLKAVLKEIENSQGQIVLFI
                     DELHTLVGAGAAEGAIDASNMLKPALARGELRCVGATTLNEYKKHIEKDAALERRFQP
                     VVVGEPTVEDTIAILRGLKERYEVHHGVRIKDSAIVAAATLSNRYITDRFLPDKAIDL
                     IDEAASRLRIEIDSLPVEIDQLEREITQLEIERQALTRETDERSKARLHEIEQRIADL
                     RERSSGMKAKWQNEKEIIERIRKAKEEVEQTKIQAEQYERAGDYNKVAELRYGRLVGL
                     QHQLEADQQKLKEAQEEGVFLKEEVDEEDVAQVVAKWTGVPVSKMLEGEMQKLVSMEE
                     RLGKRVIGQDEALTAVANAVRRARAGLQDPNRPVGSFIFLGPTGVGKTETARALAEFL
                     FDDERAMIRLDMSEYMEKHAVARMIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIE
                     KAHQDVFNILLQILDDGRLTDSKGRTVDFKNTVLIMTSNLGSREIQATSGDEKEMREA
                     VLEVLREHFKPEFLNRVDDVVIFHQLSREQIGDIIEIQLERLRRMLAEREITLGLDDS
                     ARALLAREGYDPMYGARPLKRAIQTLIQNPLATRLLRGEVLPGQTVRVSAEGDGLRFD
                     TEPTAEAAKA"
     gene            3267..3713
                     /locus_tag="VD968_09110"
     CDS             3267..3713
                     /locus_tag="VD968_09110"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HYE14584.1"
                     /translation="MRHRWNPVHDLVGLQERMNRLFEEAAERRAGAEGEEAQIERADW
                     VPAADVYEDEREFSVALDLPGIARESLDVSLDDGSLVIRGERRPAGGVGVRRAERPHG
                     RFVRSFSLPDTVDRQGVSADYKDGVLLLHLPKRDEQKARRLKIEVK"
BASE COUNT          764 a         1202 c         1260 g          524 t
ORIGIN      
        1 gacgaggtca accgcctctt ctcttccaac ttcatgcgct cgttcggcga cgaaggcatc
       61 gcccgcggcg cttgggcgcc caacgttgac atctacgagg gcaaggacga gatagtgctc
      121 gaggccgaac tgcccggcat gaaccgcgag gacttcgagg tcagcatcga gaacaacgtg
      181 ctgacgctgc gcggcgagcg gcgcttcgag aagaaggacg agggcgacaa ctaccaccgc
      241 gttgagcgct cctacggcgc cttcacgcgc tccttcacgc tgccgcagac catctcgccc
      301 gacggggcga cggccgagta caagaacggc gtgctccgtg tcgctttgcg taagcgcgag
      361 gaggtcaagg cccgccgcat agagatagcg ggcgaaggcg ccgagacctc aacgccgaaa
      421 accatagagg cgcaggccca gtcggccgac gcctccggcg aggccaagtc gaagacggcc
      481 ggccgctaaa ctgaatcgtt taaggacggg cgcggggcgg cgggctaaaa gggttcttcg
      541 gcccgccgcc ccgcccgcta atttgatgcc atgcgtttag accgtttcac actgcgcggc
      601 caggaggcca tacagtcggc catagagatg gccgagcgca acgagcacca gcaggtagag
      661 cccgagcaca tcctgctcgc catgatcgag caggccgagg gcatcgtgcg ccccgtgctg
      721 ggcaagctcg gcgcgaacgt ccaagtcatc gtcaacgacg tggaggccgc cgtcggccgc
      781 ttcccgaagg tgcagggcgg gcagcagtac ttcagcccgc gcaccacgca aatcttccag
      841 gccgcgcaga agcaggccga gaagatgcag gacgagtaca tctcgaccga gcacctgctg
      901 ctcgccatag ccgacgagaa ggacggcgcc tcgggccgca tactgcgcca gcacggcgtc
      961 aaccgcgaag acctctcaaa agtcgtcgag cagacgcgcg gcggcgtccg cgtcacagac
     1021 cagaacgccg aggccaacta ccaggcgctc gcgcgctacg ccaaagacct gaccgagctt
     1081 gcgcgccagg gcaagctcga ccccgtcatc ggccgcgacg acgagatacg ccgcaccgtg
     1141 caggtgctct cgcgccgcac gaagaacaac cccgtcctga taggagagcc gggcgtcggc
     1201 aagaccgcaa tcgtcgaagg gctcgcgcag aggatcgtat cgggcgacgt tcccgagacc
     1261 ttgcgcaaca agcgtctggt cgccttagac ctcggctcga tgctcgcggg cgctaagtac
     1321 cgcggcgagt tcgaggacag gctcaaggct gtccttaaag agattgagaa ttcgcagggg
     1381 cagatagtgc tcttcataga cgagctgcac acgctcgtcg gcgcgggcgc ggccgagggc
     1441 gcgattgacg cgtcgaacat gctcaagccc gcgctcgcgc gtggcgagtt gcgctgcgtc
     1501 ggcgcgacca cgcttaacga gtacaagaag cacatagaga aggacgccgc cctcgagcgc
     1561 cgcttccagc ccgtcgtcgt cggcgagccg accgtcgagg acaccatcgc catactgcgc
     1621 ggcctgaagg agcggtacga ggttcaccac ggcgtccgca tcaaggactc tgccatcgtg
     1681 gcggcggcga cgctctcgaa ccgctacatt accgaccgct tcctgcccga caaggcgatt
     1741 gacctcattg acgaggccgc ctcgcgcctc cgcatcgaga tagactcgct ccccgtcgag
     1801 atagaccagc tagagcgcga gataacgcag ctcgaaatcg agcggcaggc gctcacgcgc
     1861 gagaccgacg agcgctcgaa ggcgcgcctg cacgagatcg agcagcgcat cgcagacctc
     1921 cgcgagcgct cctcggggat gaaggcgaag tggcagaacg agaaggagat catcgagcgg
     1981 atacgcaagg ccaaggagga ggtcgagcag acgaagattc aggccgagca gtacgagcgc
     2041 gcgggcgact acaacaaggt cgccgagctg cgctacgggc gtctggtcgg cctacagcac
     2101 cagctagagg ccgaccaaca gaagctcaag gaggcgcagg aggaaggcgt attcctcaag
     2161 gaagaggttg acgaagagga cgtggcgcag gtcgtagcca agtggactgg cgtccccgtc
     2221 tcgaagatgt tggaaggcga gatgcagaag ctcgtctcta tggaggagcg cctcgggaag
     2281 cgcgtcatag gtcaggacga ggctctgacg gcggtcgcga acgccgtccg ccgggcgcgc
     2341 gcggggctgc aagacccgaa ccgccccgtc ggctcattca tcttcctcgg gccgacgggc
     2401 gtaggcaaga ccgagactgc gcgcgccctc gccgagttcc tctttgacga cgagcgggcg
     2461 atgatccgcc tcgacatgtc ggagtacatg gagaagcacg ccgtcgcgcg catgataggc
     2521 gcgccgccgg gctacgtcgg ctacgaggag ggcgggcagt tgacggaggc cgtcaggcgc
     2581 aggccctaca gcgtcatcct cttcgacgag atagagaagg cgcaccagga cgttttcaac
     2641 atcctgctcc agatactcga cgacgggcgg ctgaccgact cgaaggggcg caccgtggat
     2701 tttaagaaca cggtgctgat aatgacctcg aacctgggca gccgggagat tcaggcgacc
     2761 tcgggcgacg agaaggagat gcgcgaggcc gtgctcgaag tgctccgcga gcacttcaag
     2821 ccggagttcc tcaaccgcgt tgacgacgtc gtcatcttcc accagctctc gcgcgagcag
     2881 ataggcgaca tcatcgagat acagcttgaa cgtctgcgcc gcatgctggc ggagcgcgag
     2941 ataacgctcg ggctcgacga ctcggcgcgc gccctgctcg cccgcgaggg ctacgacccg
     3001 atgtacggcg cgcgcccact gaagcgcgcc atacagacgc tcatacagaa cccgctcgcc
     3061 acgcgcctgc tgcgcggaga ggtgctgccc ggccagaccg tgcgcgtctc ggccgaaggc
     3121 gacgggctgc gcttcgacac cgagccgacc gccgaggcgg cgaaagcata actacagaga
     3181 ctagaggcca gaggctagtt aatagctgat ttcttaactg gcgcccagtc tctagcccct
     3241 ggccccttct tttcggaggc tgagtgatga gacacagatg gaacccggtt cacgacctcg
     3301 tggggttgca ggagaggatg aaccgtctgt tcgaggaggc cgcggagcgg cgcgcgggcg
     3361 ccgagggcga ggaggcgcag atagagcgcg ccgactgggt gccggccgcg gacgtttacg
     3421 aggacgagcg cgagttttcg gtcgcgctcg acctgcccgg catcgcgcga gagtctctgg
     3481 acgtgagcct cgacgacggc agcctcgtca tacgcggcga gcgccgcccg gcggggggcg
     3541 tgggcgtccg gcgggccgag cgcccgcacg gacgcttcgt gcgctccttc agcctgcccg
     3601 acacggttga ccgccaaggc gtctcggccg actacaagga cggagtgctc ctgctacacc
     3661 ttcccaagcg cgacgagcag aaggcccgcc gcctcaagat cgaggtcaaa taaaggggcg
     3721 ggccgcgtgc cgcgtttgag agtttgcgag
//
LOCUS       DASPKR010000335         2699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_689369, whole genome shotgun sequence.
ACCESSION   DASPKR010000335 DASPKR010000000
VERSION     DASPKR010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_689369"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..484
                     /locus_tag="VD968_09115"
     CDS             <1..484
                     /locus_tag="VD968_09115"
                     /inference="COORDINATES: protein motif:HMM:NF025637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HYE14585.1"
                     /translation="MIFKGIARMEEHNGHMLHSARITMHAPSVIRLVEYIHIPYKSRS
                     LSRKNILLRDHSTCQYCGRQFAPSELTLDHVLPRSRGGESSWDNLVACCKRCNHQKGS
                     RTPEEAKMHLIRRPRSFSLHVNRQIMRYIGRADQTWRKYLFYESAADERWSHHEGFAD
                     "
     gene            497..757
                     /gene="tatA"
                     /locus_tag="VD968_09120"
     CDS             497..757
                     /gene="tatA"
                     /locus_tag="VD968_09120"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HYE14586.1"
                     /translation="MPNIGITELIIVLVILLLLFGSTRLPQLAKGMGKSIREFKKGIA
                     DGEEDERRELAEGRRERLRAPDAERARDEDLASDKFPVNKPR"
     gene            complement(801..1625)
                     /locus_tag="VD968_09125"
     CDS             complement(801..1625)
                     /locus_tag="VD968_09125"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE14587.1"
                     /translation="MSTHKSDKELAFLHDLYVATDWGERFAELVDEHVSLPRSGRALY
                     VGSGTGGHALALGGRAGKEVTLVCVDESEERLELARSKAAAVKDEATEFRHSQLEALA
                     FDDDQFDLVVGDASLVAPERLPEILSEMVRVAAPGALVSLSVPTASSFGEFFSIYWEA
                     LAGAGYGAEAAAVESLINELPTVSDIEALAEREALEDVESWTRIEEFDFASGGEFLGA
                     PLVRDFLLGRWLESLPDDEARSRVLGAVERIIDDERNNADFALSVKATIVVGRKRE"
     gene            complement(1612..>2699)
                     /locus_tag="VD968_09130"
     CDS             complement(1612..>2699)
                     /locus_tag="VD968_09130"
                     /inference="COORDINATES: protein motif:HMM:NF023428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HYE14588.1"
                     /translation="ARLLALRTDSLFVPLSAVFSGVKDLRAAIAEAREEKRLGRRTIL
                     FVDEIHRFNKAQQDALLPAVEDGTVTLIGATTENPSFEVIGALLSRSRTLVLEPLSEE
                     DVLTLLRRALEDEERGLARLRPVVSDELLARMARAAGGDARVALTSLEAAVEATEPGK
                     GGERVVTEETVAEALGRARYAYDKGGEEHYNLASALIKSLRNSDTDAALYWLARLIEG
                     GADPVFIARRLCILASEDVGLADPQAMVQAAAAAQITQLIGLPEALYPLTQATVYLAR
                     APKSNAVKRAYQSAAEDASETAREPVPLHLRNAVTPLMKRVGYGKGYRYVHDDPRARA
                     EMPALPEQLRGRKYWQDDEKKSGDEHS"
BASE COUNT          447 a          953 c          869 g          430 t
ORIGIN      
        1 tatgattttc aagggcatcg cccgcatgga ggagcacaac ggccacatgc tccactcggc
       61 gaggataacg atgcacgcgc cgtcggtcat acgcctcgtc gagtacatac acatccccta
      121 caagagccgc tcgctctcgc gcaagaacat actgctaagg gatcactcga cctgccagta
      181 ctgcggccgc cagttcgcgc cctcggagct tacgctcgac cacgtgctgc cgcgctcgcg
      241 cggcggcgag tcgtcgtggg acaacctcgt ggcctgctgc aagcgctgca accaccagaa
      301 ggggagccgc acgcccgaag aggcgaagat gcacctgata cggcggcccc gctccttctc
      361 gctgcacgtc aaccgccaga tcatgcgcta catcggccgg gccgaccaga cctggcgcaa
      421 gtacctcttc tacgagtcgg ccgccgacga gaggtggagc caccacgagg gtttcgccga
      481 ctaaggacgc cacgccatgc ctaatatcgg aatcaccgag cttattatcg tcctcgtcat
      541 actcctgctg ctattcggca gtacgcgcct gccgcagttg gctaagggca tgggcaagag
      601 catacgcgag ttcaagaagg gcatcgccga cggtgaggag gacgagcgcc gcgagctggc
      661 cgaaggccgc cgcgagcgcc tgcgcgcccc ggacgccgag cgcgcccgcg acgaagacct
      721 cgcctccgac aagttccccg tcaacaagcc ccgctgaaag gaaggggccg tgggctagag
      781 actagcccac ggcccctttt ttattctctc ttccgcccta caacgattgt cgccttgacg
      841 gagagcgcga agtcggcgtt gttgcgctcg tcgtcaatta tccgctcgac ggcgccgagc
      901 acgcgcgagc gcgcctcatc gtccggcagc gattcgagcc agcgcccgag caggaagtcg
      961 cgcacgagcg gcgcccccag aaactccccg cccgacgcga agtcgaactc ctctatcctc
     1021 gtccaggact ccacgtcttc tagcgcctcg cgctcggcca gcgcctcaat gtccgagacc
     1081 gtcggcaact cgtttatgag cgactcgacc gcggcagcct ccgccccgta gccggcgccc
     1141 gcgagcgcct cccagtagat cgaaaagaac tcgccgaagc tcgaagccgt aggcacgctc
     1201 agggagacga gcgcgcccgg cgcggccacg cgaaccatct cagagaggat ttcgggcaac
     1261 cgctctggcg cgaccagtga ggcgtcgccg acgactaagt cgaactggtc gtcgtcgaac
     1321 gcgagcgctt caagctgcga gtggcggaac tcggtcgcct cgtccttgac ggccgccgcc
     1381 ttgctgcgcg caagctccag gcgctcctcg ctctcgtcaa cgcagacgag cgtcacctcc
     1441 ttcccggcgc gcccgcccaa tgcgagcgcg tggccgcccg tccccgaccc cacgtagagc
     1501 gcccgcccgc tacggggcag gctcacgtgc tcgtcaacca gctccgcgaa ccgctcgccc
     1561 cagtccgtcg ccacgtacaa gtcgtgcagg aacgccagct ccttgtccga tttatgagtg
     1621 ctcatctcct gacttcttct cgtcgtcctg ccagtatttt cttccgcgta gttgttcggg
     1681 cagcgccggc atctccgcgc gcgcgcgcgg gtcgtcgtgg acgtaacggt agcccttgcc
     1741 gtagccgacg cgcttcatca gcggcgtgac ggcgttgcgg aggtgcagcg gcacgggctc
     1801 gcgcgccgtc tccgaggcgt cctcggccgc ggactggtac gcgcgcttga cggcgttcga
     1861 cttcggcgct cgcgccagat agacggtcgc ctgcgtgagc gggtagagcg cctcgggcag
     1921 gccgatgagc tgcgttatct gtgccgccgc ggcggcctga accatcgcct gcgggtctgc
     1981 gagccccacg tcctcggagg ctagtatgca gaggcggcgc gcgatgaaga cggggtcggc
     2041 gccgccttcg atgaggcgcg ccagccagta gagcgcggcg tccgtgtccg agttccgaag
     2101 ggacttgatg agcgcggacg cgaggttgta gtgctcctcg ccgcccttgt cgtaggcgta
     2161 gcgcgcgcgg cccagggcct ccgccaccgt ctcctcggtc actactctct cgccgccctt
     2221 tcccggctcc gtcgcctcga cggccgcttc gagcgaggtg agcgccacgc gcgcgtcgcc
     2281 gcccgcggcg cgcgccatgc gagcgagcag ttcgtccgaa actacggggc gcagccgcgc
     2341 gagcccgcgc tcctcgtcct ctagcgcgcg ccgaaggagc gtgagcacgt cctcctcgct
     2401 caaaggctct aggacgaggg tgcggctgcg cgagaggagg gcgcctatga cctcgaacga
     2461 ggggttctcg gtcgtcgcgc cgatgagcgt gacggtgccg tcctctacag cgggcagcag
     2521 agcgtcctgc tgcgccttgt taaagcggtg aatctcgtca acgaagagga tcgtgcggcg
     2581 gccgagccgc ttctcctcgc gcgcctcggc gatggccgcg cgcaagtctt tgacgccgga
     2641 gaagacggcc gagagcggga cgaagagcga gtcggtgcga agggccagca ggcgggcga
//
LOCUS       DASPKR010000336         3451 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_44296, whole genome shotgun sequence.
ACCESSION   DASPKR010000336 DASPKR010000000
VERSION     DASPKR010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3451)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3451
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44296"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..705
                     /locus_tag="VD968_09135"
     CDS             <1..705
                     /locus_tag="VD968_09135"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE14589.1"
                     /translation="DANSAAYVLHMKLGDEFTLERGAGAEPVRLRLVATLSDSVFQGE
                     LVMSEANFKRLFPEQEGYRFFLIEVPTAADARAAAGGLEERLADFGFDVTTTAERLDD
                     FHRVENTYLSTFQMLGGLGLVLGTLGLAAVLLRNVLERRRELALLRAVGYGRSHFALM
                     VVAENALLLFCGLLTGTLCALLAIAPAVAARGGRLPFASLGALLLAVILSGLAASLLA
                     TAAALRSPLLASLRAE"
     gene            823..2097
                     /locus_tag="VD968_09140"
     CDS             823..2097
                     /locus_tag="VD968_09140"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE14590.1"
                     /translation="MRTAALGTSQAKWAVACLLAVLCFSAGRRAEAQGDWSQWGGPAR
                     NFSVKAKGLAAAWPEKGPRQLWKRDLGEGHSAVVADGEALYTMYSRGGQEAVVALDPS
                     TGKTLWEHKYDAPVAGMNFEFGAGPHSTPLVAGDKVFAVGATGKMHALDRKTGKVAWS
                     HDLWAEYGGTRLDRGYSCSPAAYKGTVIVFVGGRGQAVMAFDQRDGRVAWRRQDLEIS
                     PNSPLVINVDGQDQLVAFMGTHVAGLDPSNGDLLWSYPHATDFGLNISTPVWGADDNT
                     LFISSAYSGGSRALKLSRDKATGKTTPTELWFHRRLRVHHSNAVRIGDYIYGSSGDFG
                     PSFVAAVDVKTGKILWQDRGFPKANFINADGRLIILDEDGNLALAEPSPAGLKVVSKA
                     EVLQKTAWTAPTLVGTRLYLRDRRSITALDLS"
     gene            2226..>3451
                     /locus_tag="VD968_09145"
     CDS             2226..>3451
                     /locus_tag="VD968_09145"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE14591.1"
                     /translation="MLGRTAAACLVTILSFGAALAGNWPHWRGPSATGASDEKNLPLR
                     WNAAGEGVAWKLAMPGLSGSTPIVWGERVFLSVAEGDALSLWCVDRSKGQALWKRPLG
                     GGNVKMRKHNMSSPSPVTDGSGVWVMTGTGVLKGFDFAGRELWARDLQKDYGEFGLNW
                     GYASSPLLHGDSLFVQVLHGMNTDDPSYLLRIDKKTGKTRWRVERPTDAVRESPDSYT
                     TPALLRNGNSAEIVVTGGDYVTGHDPATGKELWRSGGLNPDRNPFYRVVASPVVSGGL
                     VYAPSRVKPLLAIRAGGRGDVTKSHVAWSFDNGPDVPTPATDGKYLYVVNDRGIVWCL
                     DAKTGAEVYGQKRLKPGTYSASPVLADGKLYATSEDGLTSVIKAGPAFEVLAENDLGE
                     YCLSSPAVSDGQIFIRT"
BASE COUNT          530 a         1209 c         1158 g          554 t
ORIGIN      
        1 gacgcgaact cggccgcata cgttctgcac atgaagctcg gcgacgagtt cacgctcgag
       61 cgcggcgcgg gcgcggagcc cgtcaggctg cgtctcgtcg cgacgctctc cgacagcgtc
      121 ttccagggcg agcttgtcat gtcggaggcg aacttcaagc ggctcttccc ggagcaggag
      181 ggttaccgct tcttcctcat cgaagtcccg accgcggccg acgcgcgcgc ggccgcgggc
      241 ggcctcgaag agaggctcgc cgacttcggc ttcgacgtga cgacgaccgc cgagcggctc
      301 gacgacttcc accgcgtcga gaacacgtat ctttcgacct tccagatgct cggcggcctc
      361 ggcctagtgc tcggcacgct ggggctcgcg gccgtgctgc tccgaaacgt gctggagcgc
      421 aggcgcgagc tcgcgctctt gcgcgccgtc ggctacggcc gctcgcactt cgcgctgatg
      481 gtcgtcgccg agaacgcgct gctcctcttc tgcggcctcc tgacggggac gctctgcgcc
      541 ctgctcgcaa tcgccccggc ggtcgcggcg cgcggcggcc ggctgccctt cgcctcgctc
      601 ggcgcgctcc tgctcgccgt catactctcc ggcctcgccg cctcgctcct cgcgacggcg
      661 gccgcgctgc gctcgcccct gctcgcctcc ttgcgcgcgg agtgagtgaa cttttacagc
      721 ctttttacaa cgaccgtacg gcggcggagt gataatgtcg gcctgccagc ggggggacaa
      781 gcggggcgcc gatttccctt tttttgtaag gagtctttga agatgagaac tgccgcgctc
      841 ggaacgtcgc aagcgaagtg ggcggttgcg tgcctcctcg ccgtgctgtg cttctcggcc
      901 ggccgccgcg cggaggcgca gggcgactgg tcgcagtggg gaggcccggc ccgcaacttc
      961 tccgtgaagg cgaaggggct cgccgccgcg tggcccgaga aggggccgcg ccaactctgg
     1021 aagcgcgacc tgggcgaggg ccactcggcc gtcgtcgccg acggcgaggc gctctacacg
     1081 atgtacagcc gcggcgggca ggaggcggtc gttgcgctcg acccctcgac gggcaagacc
     1141 ctctgggagc acaagtacga cgcgcccgtc gccggcatga acttcgagtt cggcgccggc
     1201 ccgcactcga cgccgctcgt cgcgggcgac aaggtattcg cggtcggcgc gacgggcaag
     1261 atgcacgcgc tcgacaggaa gacggggaag gtggcttggt cgcacgacct ctgggccgag
     1321 tacggcggca cccgcctcga ccgcggctac tcttgcagcc ccgccgccta caagggcacg
     1381 gtcatcgtct tcgtcggcgg gcgtgggcag gccgtgatgg ccttcgacca gagggacggc
     1441 cgcgtcgcct ggcgccgtca agacctggag atttcgccca actcgcctct cgtcatcaac
     1501 gttgacgggc aggatcagct cgtcgccttc atggggacgc atgtggcggg gctcgacccg
     1561 tcgaacggcg acctgctctg gagctacccc cacgccaccg acttcggcct caacatcagc
     1621 acgcctgtct ggggcgccga cgacaatact ctcttcatct cctctgccta cagcggcggc
     1681 agccgcgctc tcaagctctc gcgcgacaag gcgacgggca agaccacgcc cacggagctc
     1741 tggttccacc gccgcctgcg cgtgcaccac agcaacgccg tccgcatagg cgattacatt
     1801 tacgggtcga gcggcgactt cggcccctcg ttcgtcgcgg ccgtggacgt gaagactggc
     1861 aagattctct ggcaggacag gggcttcccg aaggccaact tcatcaatgc cgacggccgc
     1921 ctcatcatcc tcgacgagga cgggaatctc gcgctcgccg agccgtcgcc cgccggccta
     1981 aaggtcgtct cgaaggccga ggtcttgcag aagacagcgt ggactgcgcc cacgctcgtc
     2041 ggcacgcgcc tctacctgcg cgaccgccgc tcgataaccg cgctcgacct gagctaacgg
     2101 ctcaacggag caaacggaga gggttgacca cggcgctgcc gtcatcgacc ctctcggctt
     2161 ttctaacccg caatccgccg tgtggtagga ttggccccga acgactttca ggaggacgac
     2221 tgaggatgct gggaaggacg gccgcggcct gtctcgtgac tattctttct ttcggcgcgg
     2281 cgctcgcggg caactggccg cactggcgcg gcccgtcggc cacgggggcg agcgacgaga
     2341 agaatctgcc gctgcgctgg aacgcggcgg gcgagggcgt ggcgtggaag ctcgcgatgc
     2401 cgggcctaag cggctcgacg ccgattgtct ggggcgagcg cgtcttcctg agtgtggccg
     2461 aaggtgacgc gctctcgctc tggtgcgtgg acaggtcgaa ggggcaggcg ctctggaagc
     2521 ggcccttggg tggcggcaat gtcaagatgc gcaagcacaa tatgtcctcg ccctcgcctg
     2581 tcacggacgg ctcgggcgtg tgggtgatga cggggacggg cgtgctcaag ggcttcgact
     2641 tcgcggggcg cgagctgtgg gcgcgcgact tgcagaagga ctacggcgag ttcggcctca
     2701 actggggcta cgcctcctcg ccgctgctgc acggcgactc gctcttcgtc caagtcctgc
     2761 acggcatgaa cacggacgac ccctcgtacc tgctgaggat tgacaagaaa acgggcaaga
     2821 cgcggtggcg cgtggagcgg ccgacggacg ccgtgcgcga gtcgcccgac tcctacacga
     2881 cgcccgcgct gctgcgcaac ggcaactccg ccgagatagt cgtcacgggc ggcgactacg
     2941 tgaccggcca cgacccggcg accggcaaag agctttggcg ctcgggcggc ctgaaccccg
     3001 accgcaaccc cttctaccgc gtcgtcgcgt cgcccgtcgt ctccggcggg ctggtctatg
     3061 cgccttcgcg cgtcaagccg ctgctcgcca tacgcgcggg cgggcgcggc gacgtcacga
     3121 agtcgcacgt cgcatggtct ttcgacaacg gcccggacgt gccgacgccc gccaccgacg
     3181 gcaagtacct ctacgtcgtc aacgaccgag gcatcgtctg gtgcctcgac gcgaagaccg
     3241 gcgccgaggt ttacggccag aagcgcctca agcccggcac ctactccgcc tcgccagtcc
     3301 tcgccgacgg caagctctac gcgacgagcg aggacggcct gacctccgtc ataaaggccg
     3361 gccccgcctt cgaggtgctc gccgagaacg acctcggcga atactgcctc agctcaccgg
     3421 cggtctccga cggccagatc ttcatacgca c
//
LOCUS       DASPKR010000337         8874 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_950792, whole genome shotgun sequence.
ACCESSION   DASPKR010000337 DASPKR010000000
VERSION     DASPKR010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8874)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8874
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_950792"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(107..1210)
                     /locus_tag="VD968_09150"
     CDS             complement(107..1210)
                     /locus_tag="VD968_09150"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYE14592.1"
                     /translation="MPAPPFGEAARAEHLRGKLIECGLADAYLDAEGNCVALRRGRSE
                     HPLLVVSAHLDTVFPEGTDFTVRRDPAGRMRAPGIADDGCGLAALVALARALRECGIE
                     TEGSLLFVGTVGEEGEGDLRGVRHLLTAGEWAGRADGFISIDGPGLERITNAALASRR
                     YRVRCRGTGGHSWGDFGAANPVHALGRAVARLAAYPAPKRPRTTFNVGRIEGGVGVNV
                     IPTEAWMDVDLRSESPDELGRLDAYFRRAAREAAEDENASRRAGTPPLELEVKLIGDR
                     PGGATPADRPLVRIALEATRAVGSRPYLDCSSTDSNIAISRGLPAVTVGAGGASGNTH
                     TLDEWYDPRGRDAGLKRALLLVLGAVGLLEARD"
     gene            complement(1352..2566)
                     /locus_tag="VD968_09155"
     CDS             complement(1352..2566)
                     /locus_tag="VD968_09155"
                     /inference="COORDINATES: protein motif:HMM:NF012885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LeuA family protein"
                     /protein_id="HYE14593.1"
                     /translation="MLASELIYDWNRVEPSFDKPNRHISFDDETLRDGLQSPSVCEPP
                     VERKVELLHLMDALGIDTADIGLPGAGGTHAEGVERLAREIAEQKLRIRPNCAARTHQ
                     NDIRPIAEISQRAGIPIEACTFLGSSFIRFFAEGWTLDKLLKLTEEAVTFAVSEGLPV
                     MFVTEDTTRAEPDTIRALYTTAIRAGARAVCVCDTVGHATPDGARSVVRFVKKIIEGQ
                     GGGVRLDWHGHQDRGLGVINSIAAIEGGADQVHGSALGVGERVGNTPMDQLLVNLKLM
                     GWIDNDLSRLGEYCRKAAESCGWTIPLNYPVFGRDAFRTATGVHAAAVIKSFKKGDNE
                     LADLIYSGVPAGVFGMRQQIEVGPMSGKSNVVYWLESRGIDATEERVQRIYDRAKSAR
                     GVLSEEEVMQLV"
     gene            2745..3164
                     /locus_tag="VD968_09160"
     CDS             2745..3164
                     /locus_tag="VD968_09160"
                     /inference="COORDINATES: protein motif:HMM:NF023403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14594.1"
                     /translation="MGKRKGRREIVVVDGANVAYEEKGEDGKPRVSNIVAVRRALEED
                     GLEPIVVIDASLKYEVDDPARLEEMIESQDVRQVPAGTDADFFIIEIAEQHGARVVTN
                     DRYRDYQKRHPSIAERRLPYMIVKGEVHLYENRPEEQ"
     gene            3197..3838
                     /locus_tag="VD968_09165"
     CDS             3197..3838
                     /locus_tag="VD968_09165"
                     /inference="COORDINATES: protein motif:HMM:NF014346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HYE14595.1"
                     /translation="MREHPPTLLKLAAVASLAAALCALWLAAGRPGALARGGRSQANT
                     TQANTTQANTTQANTSQPPARSGGAVKSLDSAPVAQAAQSSALPPELEQKVAELRQRI
                     AGQENKPAEEVFKNIQTLKGVPAGRLLRIMEMGYSRSLGVNCTHCHVVGEWEKDDKPT
                     KNVARDMARMVGVINNDLLKKIKNLQSENPVVNCTTCHRGQARPVPNAQPARP"
     gene            3878..4450
                     /locus_tag="VD968_09170"
     CDS             3878..4450
                     /locus_tag="VD968_09170"
                     /inference="COORDINATES: protein motif:HMM:NF014041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/xanthosine triphosphatase"
                     /protein_id="HYE14596.1"
                     /translation="MIIALGSARAAKIMAVRAACARVSEVDARWGRAEIIARAVESGV
                     PRMPLNDTQLMRGAVGRAEAVREALAAEGKRADLYVGLEGGFHSVTFAGARHTFLQGW
                     AYVRDGGGRGHFGAAPAVTVPAEIAARVERTGRELGEVMDEVAGEHDVRSRQGAWGVL
                     SRGLLTRAMSFETALVAAFAPFYNEEIYRR"
     gene            4482..5111
                     /locus_tag="VD968_09175"
     CDS             4482..5111
                     /locus_tag="VD968_09175"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: protein motif:HMM:NF003296.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004797 - thymidine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HYE14597.1"
                     /translation="MERLTAEGNDEHLSKVGHNSPGWVEVIAGSMFSGKSEELIRRLR
                     RAKIARLKVQVFKPDIDVRFSRDHIVSHSEMRHESSVVETAAEILALVEPGTEVVGID
                     EGQFFDNDLVHVANTLADRGVRVIVAGLDQDYTGRPFGPMPQLLAIAEYITKTHAICV
                     RCGQPANYSQRIVEVEGQVVVGAADAYEARCRRCFVPHADAPTRYITEA"
     gene            5134..5580
                     /locus_tag="VD968_09180"
     CDS             5134..5580
                     /locus_tag="VD968_09180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14598.1"
                     /translation="MTRRKPSALLTAALLLLIPSATLAQHTPAPGSPERKAIADALRA
                     PVEKELKKKVVFKIDALKVQDGWAFLRGVPQQPGGKKMDYSGTKYAREIADDMFDDWI
                     CALLRKEGGRWRVVTHVIGATDVVYATWPEDYNAPRAIFDMPEPEQ"
     gene            5708..6640
                     /locus_tag="VD968_09185"
     CDS             5708..6640
                     /locus_tag="VD968_09185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14599.1"
                     /translation="MRLLNSSKVLALSAALASALAAGCQSAETNTNATANTATGNVNV
                     NSSSPANMTTSTVTTNTGVTIEAKEPDKYSATVVVRAATAGQQSAAGQAEIKVARNGS
                     DRRYSVDTKQLGQGEIIFLDKADKRYLILPARKQYMEITSEMTGFNIDAVRSMTPGQM
                     IAYLQRQQGVERVGEETLNTRAAVKYRVAGRAQTGTQAGTAQGEAFIYVDKETGLPLR
                     IEGFGQSSGNVQGVSGGNLIAEMRDLKTEVDPSQFEIPQGYAQISPEEVKRMQQQFAM
                     ILQGVLTFLNQQAGAAANTSTGTAAPTASPSGTR"
     gene            6663..7451
                     /locus_tag="VD968_09190"
     CDS             6663..7451
                     /locus_tag="VD968_09190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14600.1"
                     /translation="MRYVLTILLGAALGGAAVYFLFVGTPRAANKLPGEPVRAPEPGG
                     PPPGTAVVELDEQFFNELLGTVFTELGQPTFRLGSAGPRPGDDEKGAGFRYVEAQAGG
                     GGGCPNQVVIAPEGGGVRTGVRLAGGQLLAPLAFSGTYSLFGQCMNFRGTAEANVALR
                     FDAPQQSLYGELNVAGVTLEGMSPVFSGPVTLFVQNAINQRVNPLTIMRGEQISLTVP
                     VQATGGTLRAQAKDIRADIQDGRLRLHITYDFNGSKGAPASPPG"
     gene            7562..8731
                     /locus_tag="VD968_09195"
     CDS             7562..8731
                     /locus_tag="VD968_09195"
                     /inference="COORDINATES: protein motif:HMM:NF025314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4214 domain-containing protein"
                     /protein_id="HYE14601.1"
                     /translation="MNKRTFALKAFALAALCLLATTARAQTETWAPAEPRRVVPERLA
                     VYTCDGQTRVAAYWVFSTGGFRVIQTPLVSRSGQTVTLDARVENWTGAVTLSLVPFEK
                     TFELGALEPGDYTLDFRSWGAPLKQAQFTVPREAPAGREIDRPCFFVSQHYRDFLSRE
                     PDAGGLAFWSNELHACGADAQCREVRKINVSAAFFLSIEFQQTGYFVYRVYKAALGRA
                     PSYAEFGPDAARVGHHVVVGSNDPWALRLSYNKDAFAQEFAGRQEFLARYEGLTHAQY
                     VDKLFETAELTPSQQERDALVAGLTACGSSAPGCLTRAAVLRKVAEHPSLDRKLFNEA
                     FVTMQYFGYLRRDPDEGGFQFWLQKLNDNNGNFVRAEMVKAFITSIEYRGRFGPT"
BASE COUNT         1490 a         3081 c         2965 g         1338 t
ORIGIN      
        1 gaagaggcta gagactagag gctaggggct agttatggtc tttgccgtgt cgccctgctg
       61 ataacaggcg gccgcaacgg cacagactaa aaccagcccc tagcctctag tctctagcct
      121 ctaacaggcc gacggcgccg aggacgagga ggagggcgcg cttgaggccg gcgtcgcggc
      181 cgcgcgggtc gtaccactcg tcgagcgtgt gcgtgttgcc ggaggcgccg cccgccccga
      241 cggtgacggc aggcaggccg cgcgagatgg ctatgttcga gtcggtcgag gagcagtcga
      301 ggtagggccg cgagcccacg gcgcgcgtcg cttccaaagc gatgcgcacg agcggccggt
      361 cggccggcgt cgcgccccca ggccggtcgc ctatcagctt gacttccaac tccagcggcg
      421 gcgtccccgc gcggcgcgag gcgttctcgt cctctgcggc ctcgcgcgcc gcgcggcgga
      481 agtaagcgtc cagtcgcccc agctcgtccg gcgattcaga gcgcaggtca acgtccatcc
      541 aggcctcggt ggggatgacg ttgacgccga ctccgccctc tatgcggccg acgttgaagg
      601 tagtgcgcgg gcgcttcggc gccgggtaag cggcaaggcg cgcgacggcg cggccgagcg
      661 cgtgaactgg gttcgccgcg ccgaagtcgc cccacgaatg cccgcccgtg ccgcggcagc
      721 gcacgcggta gcggcgcgag gcgagcgccg cgttagttat cctttcgagg ccgggcccgt
      781 caatgctgat aaaaccgtcg gcgcggcccg cccactcgcc cgccgtcagg aggtggcgca
      841 cgccgcggag gtcgccctcg ccctcctcgc ccacagtccc gacgaagagg agcgagcctt
      901 ccgtctcaat cccgcactcg cgcagggcgc gcgcaagcgc cacgagcgcc gcgagcccgc
      961 agccgtcgtc ggcgatgccg ggcgcgcgca tcctccccgc ggggtcgcgc cggacggtga
     1021 agtctgtgcc ttcggggaag accgtgtcca ggtgcgcgct cacgacgagc aaagggtgct
     1081 cgctacgccc gcggcggagc gcgacgcagt tgccctcggc gtcgaggtac gcgtcggcca
     1141 gcccacactc tatgagtttc ccccgcaggt gctcggcgcg cgcggcctcg ccgaagggcg
     1201 gcgccggcac ggagcagacg gcggcgtgct cttcgtctat gagcgctgcc tactcctcga
     1261 acgcgcggaa ggcgcgccgc acgcgctccg acatgaggag tccgcgcacc acctcctccg
     1321 gcgcggcggg cgttgcggta gggactgaca tttagacgag ctgcatgacc tcttcttcgc
     1381 tcaggacgcc tcgggcgctc ttggcgcggt cgtagatgcg ctgcacgcgc tcctcggtgg
     1441 cgtctatgcc gcgcgattcg agccaataga cgacgttcga cttgccgctc atcggcccta
     1501 cctcgatctg ctggcgcatg ccgaacacgc cggcgggcac gcccgagtag atcaggtctg
     1561 ccagctcgtt gtcgcccttc ttgaaactct tgatgacggc cgccgcgtgc acgcccgtcg
     1621 ccgtgcgaaa ggcgtcgcgg ccgaagacgg ggtagttcag cgggatggtc cagccgcaac
     1681 tctcggccgc cttccggcag tactcgccca gtcgcgaaag gtcgttgtct atccagccca
     1741 tcaacttcag gttgacgagt agctgatcca tcggcgtgtt gccgacgcgc tcgcccacgc
     1801 ccagggcgga gccgtgaacc tggtcggcgc cgccctcgat ggcggcgatg gagttgatga
     1861 cgccgagccc tctgtcctgg tggccgtgcc agtcgaggcg gacgccgccg ccctgcccct
     1921 cgattatctt tttgacgaag cgcacgaccg agcgcgcgcc gtcgggggtc gcgtgcccga
     1981 cggtgtcgca gacgcagacg gcgcgggcgc ccgcgcgtat ggcggtcgtg tagagggcgc
     2041 gtatggtgtc gggctcggcg cgcgtcgtgt cctctgtgac gaacatgacg ggcagccctt
     2101 cggagacggc gaaggtgacg gcctcctccg tcagcttcaa aagcttgtcg agcgtccagc
     2161 cctccgcgaa gaagcgtatg aaggaggagc cgaggaaggt gcaggcttca atcggtatgc
     2221 ccgcgcgctg cgagatttcg gcgattgggc gtatgtcgtt ctggtgcgtg cgcgcggcgc
     2281 agttgggccg aatccttagc ttctgctcgg ctatctcgcg cgccaggcgc tcgacgccct
     2341 cggcgtgagt cccgcccgcg ccgggcaggc cgatgtcggc cgtgtcaatg ccgagcgcgt
     2401 ccatcaggtg caggagctcc accttcctct cgacgggagg ctcgcagacg gagggcgact
     2461 gaaggccgtc gcgcagcgtc tcgtcgtcga agctgatgtg ccggttcggc ttgtcaaagc
     2521 tcggctcaac gcggttccag tcgtatatga gttcgctcgc cagcacttcc gtcgccacct
     2581 cccgggtttt acgcgttgat tttaccgctc ttcggctagg ctctcgttag gctcggatta
     2641 cagcaagcgg cagattcaat gtcaagcgag actccctgcg cgccggtggt gttatactct
     2701 cgcgcgttct tcacacaacc cgaggtgcgg tagctgaaaa atctatgggg aagcgcaaag
     2761 ggcggaggga gatagtcgtg gtggacgggg cgaacgtggc ctacgaggag aagggcgagg
     2821 acggcaagcc gcgcgtctct aacatcgtcg ccgtccggcg cgcgctcgaa gaggacggcc
     2881 tcgagcccat cgtcgtcata gacgcgagtc tcaagtacga ggtggacgac cccgcccgcc
     2941 tcgaagagat gatcgagagc caagacgtgc ggcaggtgcc ggccggcacc gacgccgact
     3001 tcttcatcat cgagatcgcc gagcagcacg gcgcgcgggt ggtcacgaac gaccgctacc
     3061 gcgactacca gaagcgccac ccctccatag ccgagcgccg cctgccctac atgatcgtca
     3121 agggcgaggt tcacctctac gagaaccggc ccgaggagca gtgacgcaca cgtcttcaaa
     3181 gcaaggagca ccgagcatga gagagcaccc ccctacgctt ttgaaactgg cggccgtcgc
     3241 ctcgctcgcc gccgcgctct gcgccctgtg gctcgcggcc gggcggccgg gcgcgctggc
     3301 gcgcggcggc cggtcgcagg ctaacaccac acaggctaac accacccaag ccaataccac
     3361 tcaggcgaac accagccagc ctccggcccg ttcgggcggg gcggtgaagt cgctcgactc
     3421 ggccccggtg gcgcaggcgg cgcagtcgtc ggcgctgccg cccgagctcg agcagaaggt
     3481 ggctgaactc cggcagcgca tcgccggcca ggagaacaag ccggccgaag aggtcttcaa
     3541 gaacatacag actctcaagg gcgtccccgc cggacggctc ctccgcatca tggagatggg
     3601 ctacagccgc tcgctcggcg tcaactgcac gcactgccac gttgtcgggg agtgggagaa
     3661 ggacgacaag cccacgaaga acgtcgcgcg cgacatggcc cgcatggtcg gcgtcatcaa
     3721 caacgacctg ctcaagaaga tcaagaacct acagagcgag aaccccgtcg tgaactgcac
     3781 gacgtgccac cgcggccagg cccgccccgt ccccaacgcg cagcccgcga ggccgtaaag
     3841 aatacggccc ccgcgtttgc cccggcaggt gacacggatg ataatcgccc tcggctcggc
     3901 gcgcgcggcg aagattatgg cggtgcgggc ggcctgcgcg cgcgtctcgg aggtggacgc
     3961 gcgctggggc agagccgaga taatcgcgcg cgccgtcgag tcgggggtgc cgcgcatgcc
     4021 gctcaacgac acgcaactca tgcgcggcgc cgtgggccgc gccgaggccg tgcgcgaggc
     4081 gctcgccgcg gaaggcaaac gcgcagacct ctacgtgggt ctcgaaggcg ggttccactc
     4141 cgtgacgttc gcgggcgcgc gccacacctt cctgcaaggc tgggcctacg tccgagacgg
     4201 cgggggccgc ggccacttcg gcgccgcgcc cgccgtcacc gtgcctgccg agatagcggc
     4261 gcgcgtcgag cgcacgggcc gcgagctggg cgaagtcatg gatgaggtcg cgggcgagca
     4321 cgacgttcgc agccggcagg gcgcctgggg cgtgctctcg cgcggcttgc tcacgcgcgc
     4381 catgagcttc gagacggcgc tcgtcgccgc cttcgcgccc ttctacaacg aagaaattta
     4441 ccggcggtaa ctaaaacctc gaaaggcgac cagcaagaca gatggagaga ctgacggcgg
     4501 aggggaacga cgagcacctg tcgaaggtgg gccacaactc gccggggtgg gttgaggtca
     4561 tagcgggctc gatgttctcg ggcaagtcgg aggagctgat acggcgcctg cgccgcgcga
     4621 agatagcgcg cctcaaggtg caggtcttca agcccgatat agacgtgcgc ttctcgcgcg
     4681 accacatcgt ctcgcactcc gagatgcgcc acgagtcgtc ggtcgtcgag accgccgccg
     4741 agatactcgc cttagtcgag cccggcaccg aggtcgtagg cattgacgag ggacagttct
     4801 tcgacaacga cctggttcac gtggcgaaca cgctggcaga ccgcggcgtg cgcgtcatcg
     4861 tcgccgggct cgaccaggac tacacgggcc gccccttcgg gccgatgccg cagctcctcg
     4921 ccatcgccga gtacatcacc aagacgcacg ccatctgcgt gcgctgcggc cagccggcca
     4981 actactcgca gcgcatcgtt gaggtcgagg gccaggtcgt cgtaggcgcc gccgacgcct
     5041 acgaggcgcg ctgccgccgc tgcttcgtcc ctcacgccga cgcccccacg cgctacatca
     5101 ccgaagcctg agacgccacc gaggtcaacg acgatgacga gaagaaagcc gtccgccctg
     5161 ctcaccgccg cgctgctttt gctcatccct tcggccacgc tggcgcaaca cactcccgcg
     5221 cccggctcgc cggagcgcaa ggcgattgca gacgcgctgc gcgcgcccgt cgagaaggaa
     5281 ttgaagaaga aggtcgtctt taagattgac gccctgaagg ttcaggacgg ctgggcgttc
     5341 ctgcgcggcg tgccgcagca gccgggcggg aagaagatgg actacagcgg cacgaagtac
     5401 gcgcgagaga tagccgacga catgttcgac gactggattt gcgcgctgct ccgcaaagag
     5461 ggcggccgct ggcgcgtcgt cacgcacgtc atcggcgcca ccgacgtggt ctatgccacc
     5521 tggcccgagg actacaacgc cccgcgcgcc atcttcgaca tgccggagcc ggagcagtag
     5581 gcgcacgcgc gcggccgccc ctgccgcctt cctctatccg cgcctttttg tgctatcctc
     5641 ttttcgcttc caagccccaa gataattaag gtcggctacc atctctgcca cgggaggaga
     5701 atagttcatg cgtcttttga acagctcgaa ggtgctggcg ctgtcggcgg cgctcgcctc
     5761 tgcgctcgcc gccggctgcc agtcggccga gacgaacacg aacgcgacgg ccaacaccgc
     5821 gacgggcaac gtcaacgtca acagctcgag cccggccaac atgaccacct cgaccgtgac
     5881 gaccaacacg ggcgtcacca tcgaggcgaa ggagccggac aagtacagcg ccacggtcgt
     5941 cgtccgcgcg gccaccgcag ggcagcagag cgccgcgggg caggccgaga taaaggtcgc
     6001 gcgcaacggc tcagaccgcc gctactccgt ggacaccaag cagctcgggc agggcgagat
     6061 aatcttcctc gacaaggccg acaagcgcta cctgatactc cccgcgcgca agcagtacat
     6121 ggagataacg tccgagatga ccggcttcaa catagacgcc gtgcgctcga tgacgccggg
     6181 gcagatgatc gcctacctgc agcgccagca gggcgtcgag cgcgtgggcg aggagaccct
     6241 gaacacccgc gcggccgtca agtaccgcgt cgcgggccgc gcgcagaccg gcacgcaggc
     6301 cgggacggcg cagggcgagg cattcatcta cgttgacaag gagacgggcc tgccgctgcg
     6361 catagagggc ttcggccagt cttcggggaa cgtgcagggc gtctcgggcg ggaatctcat
     6421 agccgagatg cgcgacttaa agaccgaggt tgacccgtct cagttcgaga taccgcaggg
     6481 ctacgcgcag atttcgcccg aggaggtcaa gaggatgcag cagcagttcg cgatgatact
     6541 gcaaggcgtg ctgaccttcc tcaaccagca ggcgggcgcg gcggccaaca cttcgacggg
     6601 cacggcggcg cccacggcct cgccctccgg cacgcgctaa aacgggagcg gggaggctgc
     6661 ctgtgaggta cgttctgact atactgctcg gggccgcgct cggcggcgcc gcggtctatt
     6721 tcctgttcgt cggcacgccc cgcgccgcga acaagctgcc gggcgagccg gtgcgcgcgc
     6781 ccgagcccgg cgggcctccg cccggcaccg ccgtcgtcga gctcgacgag cagttcttca
     6841 acgagctgct cggcacggtc ttcacggagc tgggccagcc gaccttccgc ctcggctcgg
     6901 ccgggccgcg gcccggcgac gatgaaaaag gcgccggctt ccgctacgtc gaggcgcagg
     6961 ccggcggggg cgggggctgc ccgaaccagg tcgtgatagc gccggagggc ggcggcgtcc
     7021 gcacgggggt gaggctcgcg gggggccaac tgctcgcgcc gctcgccttc agcggcacct
     7081 acagcctctt cggccagtgc atgaatttcc gcggcacggc cgaggcgaac gtcgcgctgc
     7141 gcttcgacgc cccgcagcag tctctctacg gcgagttgaa cgtcgcgggg gtcacgctcg
     7201 aaggcatgtc gcccgtcttc agcggccccg tcacgctctt cgtgcagaac gcgataaacc
     7261 agcgcgtcaa ccccctgacc atcatgcgcg gcgagcagat ttcgctcacc gtccccgtgc
     7321 aggcaaccgg cggcacgctc cgcgcgcagg ccaaagacat acgcgccgac atacaggacg
     7381 gccgactgcg cctccacatc acctacgact tcaacggctc gaagggcgcc ccggcctcgc
     7441 cgccgggctg agcgctcctt tacgttttct acgctcactc ttaaaatggc cgcggcccgc
     7501 gggggcgcgg cctcaacttt tctcccagac cgcacgcgcc gcccgcccgg agtcagaagc
     7561 tatgaataag agaacgttcg ccctcaaagc tttcgcgctc gcggccctgt gccttctggc
     7621 gacgaccgcg cgcgcccaga ccgagacgtg ggcgccggcc gagccgcgaa gggtcgtccc
     7681 cgagcggctg gccgtttaca catgcgacgg gcagacgcgc gtcgccgcct actgggtctt
     7741 cagcaccggc ggcttccgcg tcatacagac gcccctcgtg tcgcgctcgg ggcagaccgt
     7801 cacgctcgac gcgcgcgtgg agaactggac gggagcggtg acgctcagcc tcgtcccctt
     7861 cgagaagacc ttcgagcttg gcgcgctaga gcccggcgac tacacgctcg acttcaggtc
     7921 ttggggcgcg cccctcaagc aggctcagtt caccgtgccg cgggaggcgc cggcgggccg
     7981 tgagatagac cgtccctgct tcttcgtctc tcagcactac cgcgacttcc tctcgcgcga
     8041 gcccgacgcg ggcggcctcg ccttctggtc gaacgagctc cacgcctgcg gcgccgacgc
     8101 tcagtgccgc gaggtgagga agataaacgt gtcggccgcc ttcttcctct ccatagagtt
     8161 ccagcagacc ggctacttcg tctatcgagt ttataaggcc gcgctcgggc gtgcgccttc
     8221 ttacgccgag ttcgggccgg acgccgcgcg cgtcggccac cacgtcgtcg tgggcagcaa
     8281 cgacccgtgg gcgctgcgcc tcagctacaa caaggacgcc ttcgcgcagg agttcgccgg
     8341 ccgccaggag ttcctggcgc gctacgaggg gctcacgcac gcgcagtacg ttgacaagct
     8401 cttcgagaca gcggagttaa ccccctcgca gcaggagcgc gacgcgctcg tcgcgggcct
     8461 cacggcctgc ggctcctccg cgcccggctg cctaactcgc gccgcggtgc tgcgcaaggt
     8521 ggccgagcac ccttcgctcg accgcaagct cttcaacgag gcgttcgtca ccatgcagta
     8581 cttcggctac ctgcgccgcg acccggacga gggcggcttc cagttctggc tccagaagct
     8641 caacgacaac aacggcaact tcgtccgggc cgagatggtc aaggccttca tcacctccat
     8701 cgagtaccgc gggcgcttcg gcccgacctg aggcggaagg aaaactcttg acagccggcg
     8761 cgcgcgaaca tagattctcc gcgcactgtt ttcagctcaa taggttcggg aggtaccgcg
     8821 gcggcccccc tcgcacgccg cgcgccttcg tccctcgccg tcactccccg ggcg
//
LOCUS       DASPKR010000338         3430 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_175145, whole genome shotgun sequence.
ACCESSION   DASPKR010000338 DASPKR010000000
VERSION     DASPKR010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3430)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3430
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175145"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..874)
                     /locus_tag="VD968_09200"
     CDS             complement(<1..874)
                     /locus_tag="VD968_09200"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HYE14602.1"
                     /translation="MKAYPTSQIRNLAVIGHGHTGKTQLVSSLLYLAGATQRWGKVDE
                     GTTVTDYDEDSIARKMSLNQAIAHCEWREHKVNLIDTPGFAAFLPHARPALRVSDCAL
                     VVVHAAKGVEVGTEKTWAYANEFITPRMLVINQMDKEHADFGAALDSARQTFSRAIVP
                     FTLPIGQEANFKGVVDIVHMKAYEFDERGRAKEIDMPAAGRDLVDKERERLVEVIAES
                     DDALMEKYFEEGTLPEEDIVPNISKAIAASRLCPAFAVSSNTLVGLSTLLGALFLGIG
                     SQANSVREVQTLSMP"
     gene            1172..1516
                     /locus_tag="VD968_09205"
     CDS             1172..1516
                     /locus_tag="VD968_09205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14603.1"
                     /translation="MRFQIRTVLRAVSVLAIALMIMLGAGLDAYAHGKNKRWRRDNGR
                     HLGWTIGRHRGWEHSRSRHVRDDDWRWRSTWRRRQARRARREWRRDWRDGRRGFDRRQ
                     LAARRLYWRQYR"
     gene            1653..2543
                     /locus_tag="VD968_09210"
     CDS             1653..2543
                     /locus_tag="VD968_09210"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HYE14604.1"
                     /translation="MKSKEKWQEVLDATKGDSPMSSSKLWVAALAVLVVVALIGAGVA
                     FANIKYTQEGTINVVTKWGRIERVYRPEDGWFTTVAPGREAYEVNIKSFTEKTPVRVT
                     SKDNAALQVEIAVTAYTDPRHVEDYVRKYGFDERTRHERRNEILHGLIQTEARNAFAE
                     YGAYEIYANQEFIQKRIFESLRPQLSSQLLQTLESVQIGNPDFLDDRIEAAASGVVAN
                     EKQKQAEEARLEAAKIAAQTKQIEAQTYANPALLDIKKLELQLEIERARAEGIKNHQG
                     SLTIMYGGQPGVQVQVPAGR"
     gene            2551..2703
                     /locus_tag="VD968_09215"
     CDS             2551..2703
                     /locus_tag="VD968_09215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14605.1"
                     /translation="MRYFVLLWVVVEVLQVAVIAALAVGYRNLQRRLEQTDRFERGAP
                     PSVTEG"
     gene            3171..>3430
                     /locus_tag="VD968_09220"
     CDS             3171..>3430
                     /locus_tag="VD968_09220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14606.1"
                     /translation="MSEEYKEGERDYGEGGGAEIGFDDFVARIVRDPNDPPDLLLLSG
                     YLGSSSEEGHVRLYLNEELSRYVEIPEGAIRHTQEIPPEQSPL"
BASE COUNT          625 a         1094 c         1153 g          558 t
ORIGIN      
        1 ccggcatcga cagggtctga acctcgcgca ccgaattggc ctggctgccg atgccgagga
       61 agagcgctcc gaggagggta gagagcccga ccagagtgtt ggacgagacg gcgaaggcgg
      121 ggcagaggcg gctggcggcg atggccttcg agatgttcgg gacgatgtcc tcctcgggca
      181 gcgtcccctc ctcgaagtac ttctccatga gcgcgtcgtc cgactcggcg atgacctcga
      241 ccagccgctc gcgctccttg tcaacgaggt cgcgcccggc ggcgggcatg tcaatctctt
      301 tggccctgcc gcgctcgtcg aactcgtaag ccttcatgtg gacgatgtca acgacgccct
      361 tgaagtttgc ctcctggccg atggggaggg tgaaggggac gatggcgcgg ctgaaggtct
      421 ggcgggcgga gtccagcgcg gcgccgaagt cggcgtgctc cttgtccatc tggttgatga
      481 cgagcatgcg cggggtgatg aactcgttgg cgtaggccca ggtcttctcg gtgccgacct
      541 cgacgccctt ggccgcgtgc acgacgacga gcgcgcagtc ggagacgcgc agcgcgggcc
      601 gggcgtgcgg gaggaaggcg gcgaagccgg gcgtgtctat gaggttgacc ttgtgctcgc
      661 gccactcgca gtgcgcgatt gcctggttga gggacatctt gcgcgctatc gagtcctcgt
      721 cgtagtcggt gacggtcgtg ccttcgtcca ccttgcccca gcgctgcgtg gcgccggcga
      781 ggtagaggag cgagcttacg agctgcgtct tcccggtgtg gccgtggccg atcacggcta
      841 ggttgcgtat ctggctggtc ggataagctt tcatggcgtc aggtcagaac ttcctttcga
      901 gcgtgtggtg gccgggcggc tggccggcct gcggaggggc cgccgcggct tcgccttgaa
      961 tagaattgcg cgggaaaaaa cttcaaggtc gagccagtaa tttacgcgac cgaaaggccg
     1021 gagcgcaagc gggggaaaag ggggcgcgag ccggcgcgcg gcaccgcgtt tgccggtgtg
     1081 ttgacggggg gcgcgcactt ctttatcgtt acgggcaggc tctcccgaaa ctctcccggc
     1141 aaactaattt ttggcttgga ggaagcgagg gatgaggttt caaatccgta cagtgctgag
     1201 ggcggttagc gtactcgcca tcgccctgat gataatgctg ggggcggggc tggacgctta
     1261 cgcgcacggg aagaacaagc gctggaggcg cgacaacggc cgccacctcg ggtggacaat
     1321 cggccgccac cgcggctggg agcacagccg cagccgccac gtccgcgacg acgactggcg
     1381 ctggcgctcc acctggcgcc gccgccaagc ccgccgcgca cgccgcgagt ggcggcgcga
     1441 ctggcgcgac ggcaggcgcg gcttcgaccg ccgccagctc gccgcgcgca ggctctactg
     1501 gcggcagtac cgctaaaccg aatcgcagcg acaacagggc cgcgagactt cagctcgcgg
     1561 ccctgtcgtg ttctgctgta cactctccgt taagctcgta cgccggccac gcccgcgcaa
     1621 aactaatagt agcctttttc gtataatcga gcatgaagag caaagagaag tggcaggagg
     1681 ttctcgacgc caccaaagga gattccccca tgtctagcag caagctctgg gtcgcggcgc
     1741 tggcggtgct cgtcgtcgtc gcgctaatcg gcgctggcgt cgccttcgcc aacatcaagt
     1801 acacgcagga gggcaccatc aacgtcgtga cgaagtgggg ccgcatcgag cgcgtctatc
     1861 gccccgagga cggctggttc acgacggtcg cgccggggcg cgaggcctac gaggtcaaca
     1921 tcaagtcgtt cacggagaag acgcccgtgc gcgtcacgtc gaaggacaac gcggcgcttc
     1981 aggtcgagat agccgtgacg gcctacacgg acccccgcca cgtcgaggac tacgtgcgca
     2041 agtacggatt cgacgagcgg actcgccacg agcgccgcaa cgagatactg cacggcctga
     2101 tacagaccga ggcgcgcaac gccttcgccg agtacggggc ctacgagatt tacgccaacc
     2161 aggagttcat acagaagcgc atcttcgagt cgctcaggcc gcagttgagc agccaactcc
     2221 tccagacgct agagtccgtg cagataggca accccgactt cctcgacgac cgcatagagg
     2281 ccgcggcctc cggcgtcgtc gccaacgaga agcagaagca ggccgaggag gcgcgcctag
     2341 aggccgcgaa gatcgccgcg cagaccaagc agatagaggc gcagacctac gccaaccctg
     2401 cgctccttga catcaagaag ctcgagcttc aactcgagat cgagcgcgcc cgcgccgagg
     2461 gcatcaagaa ccaccagggc tcgctcacaa tcatgtacgg cggccagccc ggcgtgcagg
     2521 ttcaagtccc tgcggggagg tgaaaaggcc gtgaggtatt tcgtcttact ctgggtcgtc
     2581 gtggaggtct tgcaggtggc cgtcatagcg gcgctcgccg taggctaccg caacctacag
     2641 cgcaggctgg aacagaccga ccgcttcgag cgcggcgcgc cgccctccgt cacggagggc
     2701 tgaagccggc tcgggcgcga gcctggggcg cgcggccgct gaagtgcggc cgcgcgccct
     2761 tctttttttc gcgggcgggg accgtccccg cccgtacaga atttcgttga caggcgcggg
     2821 ggttaggcat aatctttggc cgccgcgaaa agcgttgacg aaagcctcga tctcgtcagt
     2881 ctcacgaaag cgtgttttat cggcaggctt cgactcgccc cttccaccga cgccgccctt
     2941 cctttcgtca gaggctctta caacccccac gctttatctg agatcgcagc gccctgcgcc
     3001 cccctagcgg ccttagaacc ctcgtccttg aaaacttcga ctgcgcgcgc cgcccggacg
     3061 gggcgcgcgt ctcacacgcg attgtcctcg aaggggggcg gccgccgcgc gcggccacgg
     3121 cccccggctt ccctgtcggc acagacaggc ccaccccggg agaaaaaatc atgagcgaag
     3181 aatacaagga aggagagcgg gattacgggg aaggaggcgg ggccgagata ggcttcgacg
     3241 acttcgtcgc gcggatagtg cgcgacccta acgacccgcc cgacctgctg ctgctatcgg
     3301 gctacctcgg ctcctcgtcc gaggagggcc acgtccgcct atacctgaac gaggagctga
     3361 gtcgctacgt cgagataccg gaaggcgcca tacgccacac gcaggagata ccgcccgagc
     3421 agtcgcccct
//
LOCUS       DASPKR010000339         2807 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_304102, whole genome shotgun sequence.
ACCESSION   DASPKR010000339 DASPKR010000000
VERSION     DASPKR010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2807)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2807
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304102"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..729
                     /locus_tag="VD968_09225"
     CDS             <1..729
                     /locus_tag="VD968_09225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14607.1"
                     /translation="FKRFTRLLGRLALAESKLREDCRLKQLLALFTLVREEAGELLDF
                     IENRALHAEGLDAKARELLDSTSYAVRMELRKAFEHELAGFCSLRLPTQLFARVENAC
                     GLLRDCFRQSVVALAQGLDPSLDGAWLFTQFETKLQQSLALRLELWRLMRFVRGTVSA
                     SEPPPAEAVRERLLSFRQGGQRFLMYKDFEPFERFVEEVEDSRSPEQLAAVLHRFDAF
                     LETLFGQVNMRAVLAEHPFEPPAE"
     gene            complement(762..2477)
                     /locus_tag="VD968_09230"
     CDS             complement(762..2477)
                     /locus_tag="VD968_09230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14608.1"
                     /translation="MTTLRKVFIVLCLLAVAAVAWVWWSRPERVDMAAYVPADTLIYL
                     EADSLPDILAAYTSTDAWRALAPREGVKSGGAGWLSRLAVLTGVGRGETVVFARARVA
                     VAVLGFDATEEPGATLKFSPRAALVAETHTSEWRARPVIEKLVGDFAQKTFGAVSVER
                     KEVDGDAFVTWAEQSGSKRRIIASVSGGVAVVGNDEAAVRACLEAKRGARPSLSGVAQ
                     LGEMRARVESGGALAFGFAPKGSAAKIFEVLAPVFVGGITQKPEAQSIMAAELPRLIN
                     QTVLGVGWSSRLVEGSIEDRYFVSLPEDVTARLQPAFATAAPGEGGGALALVPAGVYQ
                     VSAYNFRNPDLAWRGTNAALSARVDVSRAPFVTFGLEALVKPYGVEKPVEFLRACGPE
                     LVTARLGVESEGKVLAASARDEAALRKLVREHLGARARAERVGDAELFVSAEAGPGAA
                     AFLAGYLLTGSEEDVRACLAARAENRAFGGPRGPGAAAGSIFDGSHFVRTLTDDSESA
                     RAVLARFGRRVDEGGAGGQSTSDLPRGGYSLSETRLAEDGLEKRTRSSFGLLGDLFAR
                     LAPGR"
BASE COUNT          477 a         1012 c          876 g          442 t
ORIGIN      
        1 ttcaagaggt tcacgcgcct gctgggccgt ctggccctcg ccgagtcgaa gctcagggag
       61 gactgccgcc tcaaacaact gctcgccctc ttcacactcg tgcgcgagga ggcgggcgag
      121 ctgctcgact tcatcgagaa ccgcgcgctc catgccgagg ggctcgacgc gaaggcgcgc
      181 gagctgctcg acagcacctc ctacgcagtc aggatggagc ttcgcaaggc gttcgagcac
      241 gagctggcag gcttctgttc gctgcgactg cccacgcaac tcttcgcgag ggtcgagaac
      301 gcatgcggcc tcctgcgcga ctgcttccgc cagtcggtcg tcgcgctagc gcaggggctc
      361 gacccttcgc tcgacggcgc gtggctcttc actcagttcg agacgaagct ccaacagtcg
      421 ctcgcgctca ggctagagct ctggcggctc atgcgcttcg tgcgcggcac agtctcggcg
      481 tcagagccgc cgccggccga ggccgtccgc gagcgcctgc tctcgttcag gcagggcggc
      541 cagcgcttcc tcatgtacaa ggactttgag ccgttcgagc gcttcgtcga ggaggtcgag
      601 gactcgcgca gccccgaaca actcgccgcc gttctgcacc gcttcgacgc cttcctcgaa
      661 accctcttcg gacaagtcaa catgcgagcc gtgctcgcag agcacccctt cgagcccccg
      721 gccgagtgaa gagcttcgct caagccttta gcgattcgga atcagcggcc gggcgcgagc
      781 cgtgcgaaaa ggtcgccgag cagcccgaac gaggagcgcg tcctcttctc gagcccgtcc
      841 tcggccagac gggtctcgct caagctgtaa cccccacgtg gcaaatctga agttgactgc
      901 ccgccggcgc ccccttcatc aacgcgccgg ccgaagcgtg cgagcacggc gcgcgccgat
      961 tcgctgtcgt ccgtcagagt ccgcacgaaa tgagagccgt cgaagattga gccggccgcc
     1021 gcgcccggcc ctcgcgggcc gccgaaggcg cggttctcgg cgcgggcagc gaggcaggcg
     1081 cgcacgtcct cctcggagcc ggtgagcagg tagccggcga ggaacgcggc cgcgcccggc
     1141 cccgcctcgg ccgagacgaa caactccgcg tcgcccacgc gctcggcgcg cgcgcgcgcg
     1201 cccaaatgct ctctcaccag ttttctcagc gccgcctcgt cgcgcgccga ggcggcgagc
     1261 actttacctt cgctctcgac gcccagtcgc gccgtcacca actccggccc gcacgcgcgc
     1321 aaaaactcga ccggcttctc gacgccgtat ggcttcacaa gcgcctctag cccgaacgtt
     1381 acgaagggcg ctcgtgaaac gtccacgcgt gccgagaggg cggcgttcgt gccgcgccac
     1441 gcgaggtcgg ggttgcggaa gttgtaggca gagacttggt atacgcccgc aggcaccaac
     1501 gcgagcgcgc cgccgccttc gcccggcgcg gcggtcgcga acgcgggctg gagccgcgcg
     1561 gtaacgtctt cgggcagcga tacgaagtac cgatcctcta tgctcccctc gacgaggcgc
     1621 gaactccagc cgacgcccag cacggtctgg ttgattagcc gcggaagctc cgccgccatg
     1681 atgctctgtg cttccggctt ttgcgttatc ccgccaacga aaaccggcgc gagcacctcg
     1741 aagattttcg ccgcgctccc cttcggcgcg aacccgaacg cgagcgcgcc gccggattcg
     1801 acccgcgcgc gcatctcgcc caactgcgcg acgcccgaga ggctcggccg cgcgcccctc
     1861 ttcgcctcaa ggcaagctcg aacggccgcc tcgtcgttgc cgacgacggc gacgccgccc
     1921 gaaaccgacg cgattatcct ccgcttcgag cccgactgct cggcccatgt gacgaaggcg
     1981 tcgccgtcaa cctccttcct ctccacgctc acggcgccga aagtcttctg cgcgaagtct
     2041 ccaaccagct tctctatcac ggggcgcgcg cgccactctg aggtgtgagt ttcggccacc
     2101 agcgccgcgc ggggcgaaaa tttgagcgtc gcccccggct cctcggtcgc gtcgaaaccc
     2161 agcacggcca ccgcgacccg tgcgcgcgcg aacaccaccg tttcgccacg cccgacccct
     2221 gtcagcacgg caagacggct cagccagccc gcgccgccgg atttgacccc ctcgcgcggg
     2281 gcgagggcgc gccaggcgtc cgtcgaggtg taggcagcga gtatgtcagg caaactgtcg
     2341 gcttcgagat agatgagcgt gtcggcaggc acgtaggcgg ccatgtcaac cctctcgggg
     2401 cgcgaccacc acacccacgc gacggccgcg acggcgagta agcacaggac gatgaacacc
     2461 ttgcggagcg tcgtcatacg ccgtgcatcg taactttcgc acacgcgcca ggcaaggccg
     2521 acacagagac gaaaagcgcc ccgcgcgccg gcccgaccct tgctctgatt cacgtcccga
     2581 agtagaaaaa ctttctggaa ttcgtcgccc gaaggttcag gaaggcgggc taaacgataa
     2641 ttattcaatg agttaaacca tgcaaaatag tggttgacac ttgtgacgcc gctagtttat
     2701 attttcagtg gcaggagtga ttcgctcgtt cagccgtagc gggtcaactc tttgaaggtc
     2761 ggcggggtgg ggcgcggcga gcgcccgcgg gctcccggcc cgacctc
//
LOCUS       DASPKR010000340         9243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_176046, whole genome shotgun sequence.
ACCESSION   DASPKR010000340 DASPKR010000000
VERSION     DASPKR010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9243)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9243
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176046"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1779)
                     /locus_tag="VD968_09235"
     CDS             complement(<1..1779)
                     /locus_tag="VD968_09235"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HYE14609.1"
                     /translation="MKRFPLCLSLLLALSHFITAGAQDLDDASVGGVVTDQHGAVVAG
                     ARVTAVFAETGLARTTETDGAGRYRFVELRPGEHSLRVERAGFAAEERRGLALSAGQS
                     LRLDFTLRPESVSAEQTVSAAEPGRAVDATRTVVGGAVTREEIERLPLATRSPLDFVF
                     TLGGVTEEPLATRDAAEDRDASGRGGSATRAATTPEEAGTFALSGGPAYSNNVTVDGL
                     DNNDDRSARERFQPSAEAVEEVQAITNQFSAEYGRASGGRVNLRTRSGSRQLRGRAFY
                     FFKDEALDANTWSNNRRGLGRLPLQEHNPGFTLGGPASLRGEGTRTFFFVAYEHASLL
                     DSALVDALVPIGRNPAFPLPAPTTLEGRRFEPSATQPNQPAELAPFVERVSTPSRTHA
                     LTARLDREFGGAHNGTFLLQFGRSKNLRQFGGGLRLPGALQSRGRDTEALSYTDNFVV
                     SPSAVSQLRVQFSRLRPSLRATERSGPVVLINVNDPLDSDDAADRSGTLVAGSSSAGA
                     TDRAETRFQLQHTLTVLRGAHAFKLGADLHRVRSVFLDLSDAGGTYSFTSAGDFLASA
                     PSRFRQRFGTESVQRNTYAGLFFQDEW"
     gene            complement(1968..4301)
                     /locus_tag="VD968_09240"
     CDS             complement(1968..4301)
                     /locus_tag="VD968_09240"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYE14610.1"
                     /translation="MKFSRRLRAVTAWALAATTILCAASPAVTRAGDSLSPRQHALPA
                     GHDARQNGQGSGAWKRELFGGREVVAGQVLVKFRDSASAESVARAEQGAGAELVRKVG
                     GAGARLLHSRGKDTAALVQEFSERDDVLYAEPNFVIRPSSLPNDTYFSELWGLRNTGY
                     TSGAGPGTQGADIAAEPAWDVSTGSRDVVVAVVDTGVDYNHPDLTANMWSAPAPFTVQ
                     IGGQTIRCEAGTHGFNAITRTCDPMDDHSHGTHVAGTIGAGGNNGVGVVGVNQTASMM
                     GLKFLAADGSGTLADALDALDFAIQAKQAFAAIGGANVRVLSNSWGWSGQPSQALLDQ
                     INRAGENDMLFVAGAGNEGSDNNVVPFYPASYDAPNVVSVAATDNRDALAYFSNYGAG
                     RVHLAAPGVFILSTIVGGSYDWFSGTSMATPHVSGAAALVLSRCPLGTAALKDNLLGN
                     VDQVPSLSGVTTTGGRLNVSEALLACADRGPLSSLTLSAASVTGTKSSVGTVTLAAPA
                     PSTGATVYLSSSNTAAATVPSYVKVAAGATSKIFTVATKSVSAPTKVEVTATYQSHAR
                     RAELVVAPPVLNGLSLSPSTVTGLCQSSALSVTLNAKAPAGGVLINLTNDNPAASVPG
                     SVTIPAGATSATITVTASPVGAKTVGSVTARPADANFGTTAHSRTLTVMPNGVKNLVM
                     DAPANTVTGPATVLMTMTLACPAPAGGQLVLLSTSRAAVARPVGSDGNPINSVAVGAG
                     QTQATFRVQAYDVAAPTSATINATANGITKSLALKVN"
     gene            complement(4635..5918)
                     /locus_tag="VD968_09245"
     CDS             complement(4635..5918)
                     /locus_tag="VD968_09245"
                     /inference="COORDINATES: protein motif:HMM:NF015535.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P1 family peptidase"
                     /protein_id="HYE14611.1"
                     /translation="MIRKITLLPGRVLLLTALLAGAAAWGVVDAGPSFAQAKPRAREL
                     GVPFEGLPGAHNAITDVAGVEVGHTTLISGSGRLVVGKGPVRTGVTAVLPRGRKSFDP
                     VFAAWFPLNGNGEMTGTTWVRESGFLEGPILITNTHSVGVVRDAAIDWEIKNGRKFLF
                     TYPVVAETYDGVLNDINGFHVKPQHVFAALDGAAGGRVAEGNVGGGTGMLCNGFKGGI
                     GTSSRVLAAESGGYTVGVLVQCNYGSRRGLRIAGVPVGIEFPDATVCAAGAEAPSQEF
                     LRGLPRCGQAGAPPERPQPELGSIIIVVATDAPLLPHQLDRLVKRAALGLGREGSIAS
                     NFSGDIFVAFSTANAGAAADKGTVALTMLPNERLDPLFSAAVQATEEAVTNAMLAAET
                     MTGADDVRAYAIPHDRLREIMRKYNRLAPPAGARQ"
     gene            complement(5977..7743)
                     /locus_tag="VD968_09250"
     CDS             complement(5977..7743)
                     /locus_tag="VD968_09250"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE14612.1"
                     /translation="MKRIDCGRLGLALALAAVIVSAAGTAPAAGQQAGAQVPSYPLKF
                     GVFVARFGPDGAFTLEGDRWPSINGRWKREGDEVELLSQPGGPPGCDGPGRYRVRVDG
                     GRVSFDLVSDGCTPRRMILDRSTWSPAGEMKAAPARRIVRTAGARAPSRLEPGSPRGS
                     WPSFRGPQASGVADGQSLPDRWDGRTGENILWRTPIPGLAHSSPVVWGSRIFVTSAVS
                     SEPNATFRPGLYGDGDASQDRSRHRWALYALDKRTGKVLWERTAFEGAPVDKRHIKST
                     YANSTPATDGRTVVAWFGSQGVYAYDVDGRFLWKVDLGRLDLGAYDIPTYEWGPASSP
                     VIWNNLVILQCDTQHDSFILALDAGTGRTVWKTDREELPSWGTPTVALTPSGPELVAN
                     ASNYIRGYDPRTGKELWRLGRSSKITAPTPIFSDGLFVVASGRAPERPIFVVRAGARG
                     DLTLPEGKSQSEAVAWSRTGRGPYMPTPLVYNGILYVLANNGLLDAYDLRTGEEIYRQ
                     RLPLVGSGFSASPVAADGKLYLSNEDGEMLVVKAGRSFAHVATNSMGELLMATPALSD
                     GVMYVRSSKSLFAVGRKQATVK"
     gene            complement(7754..8491)
                     /locus_tag="VD968_09255"
     CDS             complement(7754..8491)
                     /locus_tag="VD968_09255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14613.1"
                     /translation="MSDIGFLIETEEEYQQLALRAYEEGLRIEVAGGAYVRWSPGGGV
                     ELWLQLDGEESVTGLSPHFSGSALMRVGLTRRVVRSEEQPLDGGFYAWADPQGEDPEA
                     GEYPFVFDAPDYKLHDDLNLPAISRARLAAFAHELQSFESDESYERSQPGEVKFAPES
                     FIPSGLFTPGGESPEPPQAYAIFTGHVLETAILANPVTGSEFCWAKVSTLGGEIDVVA
                     DPVLLNGPIVRGGVVSGSFWLSGRLAR"
     gene            complement(8830..>9243)
                     /locus_tag="VD968_09260"
     CDS             complement(8830..>9243)
                     /locus_tag="VD968_09260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14614.1"
                     /translation="LSKGGLVLSSILLGERDSQGAPAEGEAGRPRAVAVDVDRRFARA
                     SVLRFQTYVYNSAPAGGAGGRDVQLQAQVFRGPTPLITTQAFKVPLADDPARLPFWSE
                     LSLDQLPPGRYTLQLTATDRTSNRTAVERIGFYVE"
BASE COUNT         1448 a         3131 c         3185 g         1479 t
ORIGIN      
        1 ccactcgtct tgaaaaaaga ggcccgcgta ggtgttgcgc tgcaccgact ccgtgccgaa
       61 gcgctggcgg aagcgcgagg gcgcggaggc aaggaagtcg ccggcgctcg tgaagctgta
      121 ggtgccgccc gcgtccgaga ggtctaggaa gacggaacga actcgatgca ggtctgcgcc
      181 gagcttgaag gcgtgcgcgc cgcgcaggac ggtgagcgtg tgttgtagct ggaagcgcgt
      241 ctcggcgcgg tcggtcgcgc ccgccgagga cgagcctgcg acgagagtgc cggagcggtc
      301 ggccgcgtcg tcggagtcga gcgggtcgtt gacgttgatg aggacgacgg ggccgcttct
      361 ttctgtggcg cggagcgagg ggcggaggcg cgagaactgt acgcggagct ggctgacggc
      421 cgaaggcgag acgacgaagt tgtccgtgta ggagagcgcc tcggtgtcgc gcccgcgcga
      481 ttgcagcgcg ccgggaagtc gcaagccccc gccgaactgc cgcaggttct tcgaccgccc
      541 gaactgtaaa aggaaggtgc cgttgtgcgc gccgccgaac tcccggtcga gccgggccgt
      601 gagcgcgtgc gtgcgcgagg gcgtcgagac tcgttcgacg aagggcgcaa gctcggcggg
      661 ctggttcggc tgcgtggccg aaggctcgaa gcggcggccc tcgagcgtgg tgggcgcggg
      721 cagcgggaag gccgggttcc gcccgatcgg cacgagtgcg tccacgagcg cggagtcgag
      781 caacgacgcg tgttcgtatg ccacgaagaa gaaagtccgc gtaccctcgc cgcggaggct
      841 cgcggggccg cccagcgtga agccggggtt gtgctcctgc aagggcagac ggccgagccc
      901 tcggcggttg ttcgaccagg tgttcgcgtc gagcgcctcg tctttgaaga agtagaaggc
      961 tcgaccgcgc agttgccttg agccgctgcg agtgcgtagg ttgacgcgcc cgcccgaggc
     1021 ccgcccgtac tcggccgaga actggttagt gatggcctgc acttcctcca cggcctcggc
     1081 cgagggctgg aagcgctcgc gcgcggagcg gtcgtcgttg ttgtcgagcc cgtccacggt
     1141 gacgttgttc gagtacgcgg ggccgcccga gagcgcgaag gttccggcct cctcgggcgt
     1201 cgtcgccgcg cgcgtggcgg agccgccgcg ccccgaggcg tcgcggtctt cggccgcgtc
     1261 tcgcgtcgcg agcggctctt ccgtcacgcc gccgagcgtg aagacgaagt cgagcggcga
     1321 gcgggtcgcg agcgggagcc gctcgatctc ctcgcgcgtg acggcgccgc ccacgaccgt
     1381 gcgcgtcgcg tcaacggccc gccccggctc ggcggccgag acggtctgct cggcgctcac
     1441 tgactcgggc cggagcgtga agtcgagccg caggctctgg ccggcggaga gggctaggcc
     1501 gcgcctctct tcggcggcga agcccgcgcg ctccacccgc agcgagtgct cgcctggccg
     1561 aagctcgacg aagcggtagc ggcccgcgcc gtccgtctcg gtcgtgcgcg cgaggcccgt
     1621 ctcggcgaag acggccgtga cgcgagcgcc ggcgacgacc gcgccgtgct ggtctgtgac
     1681 gacgccgcct acggacgcgt cgtcaaggtc ttgggcgccg gctgttatga agtgtgagag
     1741 ggcgagcagg agggacaggc agagggggaa gcgtttcatg tcgttcgtct ccgtggcggc
     1801 cgcgcgggcg gcgccgtcca gcgcgcaggc gtgcgcgcgt cagttgagac gaacttttag
     1861 tgttgcgatg cccccggcga agtaaggtgg gtcgggcggg cgcgaacttt atcacccgcc
     1921 ggccggggat tacaaggcca ttcccagggg cggagtgttc tccgccccta gttgactttc
     1981 agcgcgagac tcttcgtgat gccgtttgcc gtggcgttga ttgtcgccga ggtcggcgcc
     2041 gccacgtcat acgcctgcac tctgaaggtc gcctgcgtct gccccgcgcc gacggcgacc
     2101 gagttaatcg ggttgccgtc agagccgaca gggcgggcca cggccgccct actggtcgag
     2161 agcaggacta actggccgcc cgccggcgcc gggcacgcta aggtcatcgt catcagcacc
     2221 gtcgcggggc cggtcacagt gttggccgga gcatccatca ccagattctt cacgccgttg
     2281 ggcatgacag tcagcgttct gctgtgggcg gtcgtgccga agttagcgtc ggcgggcctg
     2341 gccgtaacac tgcctaccgt cttagcgccg accggggagg ccgtcacggt gatagtggcc
     2401 gaggtcgcgc ccgccgggat tgtcacgctt cccggcaccg aggccgcagg gttgtcattc
     2461 gtcaggttaa tgagcacgcc gcccgccggg gctttcgcgt tgagcgtaac actcagtgcc
     2521 gacgactggc ataggcccgt tacggtcgaa ggggacaacg acagcccgtt caacacaggg
     2581 ggcgcgacga caagctccgc cctccgcgca tgactctggt aggtggccgt gacctccact
     2641 ttcgtcggcg ccgagacgct cttcgttgcc accgtaaaaa ttttgctggt ggcgccggcg
     2701 gccaccttga cgtatgaggg gacagtcgcc gccgccgtgt tgctcgacga gagatagacc
     2761 gtagcccccg tcgagggcgc cggcgccgcg agcgtgaccg tgcccaccga agacttcgtg
     2821 ccggtgacgc tcgccgcgct cagcgtgagc gaagagagcg gccctcggtc ggcgcacgcg
     2881 agcagcgcct cactgacgtt aaggcgcccc ccggtcgtag tgacgcctga cagcgaaggc
     2941 acctgatcaa cgttgccgag aaggttgtcc ttgagcgcgg ccgtgcccag cgggcaacgg
     3001 gagagcacca gcgcggcggc cccggacacg tggggggtgg ccatagaagt cccgctgaac
     3061 cagtcgtaag agccgccgac tatagtcgaa aggatgaaga cgccgggcgc ggccaggtga
     3121 accctccccg caccgtagtt ggagaagtaa gcgagggcat ccctgttgtc cgtcgccgcc
     3181 accgacacga cgttgggcgc gtcataactc gccgggtaaa acggcacgac gttattgtcc
     3241 gagccctcgt tgcccgcccc ggcgacgaac aacatgtcgt tctcgccggc gcggttgatc
     3301 tggtcgagga gcgcctggga gggctgcccg ctccagcccc aactgttcga gagcacgcga
     3361 acgttggcgc ccccgatggc ggcgaaagcc tgcttggcct ggatggcgaa atcgagcgcg
     3421 tcgagggcgt cggcgagggt gccgctcccg tccgccgcta agaatttaag gcccatcatg
     3481 ctcgccgtct ggttgacgcc caccaccccg acgccgttgt tcccgccggc cccgatggtg
     3541 ccggcgacgt gcgtgccgtg gctgtgatcg tccatcgggt cgcaggttct ggtgatagcg
     3601 ttgaagccgt gcgtgcccgc ctcgcagcgg atggtctgcc cgccgatctg taccgtgaag
     3661 ggcgcgggcg ccgaccacat gttggccgtc aggtcggggt gattgtagtc aacgccggtg
     3721 tcaaccacgg cgactacaac gtcgcgcgag ccggtggaca cgtcccaggc cggctcggcg
     3781 gcgatgtctg cgccctgagt tcccgggccg gcgccgctcg tgtagccggt gttgcgcagg
     3841 ccccacagct cggagaagta agtgtcgttc ggcagggagc tagggcggat aacgaaattg
     3901 ggctcggcgt agaggacgtc gtcgcgctcc gaaaactcct gcaccaaagc ggccgtgtct
     3961 ttgccgcgcg aatggagcag ccgcgccccg gcgccgccca ccttccgaac caactcggcg
     4021 cccgccccct gctcggcccg agcgacgctc tcggcggagg ccgagtcgcg gaacttgacc
     4081 agcacctgcc cggcgacgac ctccctccct ccgaagagct ccctcttcca cgccccggag
     4141 ccctgaccgt tttgccgggc atcatggccc gcggggagcg cgtgctgcct cgggctgagg
     4201 ctatcacctg ctctggtgac tgccggagac gccgcgcaca ggatggtagt ggcggcgagc
     4261 gcccaggccg ttacggccct aagccttctg ctgaatttca taatgtatgt cttaccgccc
     4321 ccgcccgcag tcacacgcag taacgagcgt ctgcctgcgc agggcgcggc gttgccgcaa
     4381 ggggcttcct acatcggtcg tggttgtgaa gatgagggga gcgtcagccg aataccggcg
     4441 ttgttacgag agccagcatt ggatactttc ggggaagaat tagttgcctg cgctcacgcg
     4501 gcgggccggc cggaatacga gggtcacgac ggccgggctt gggcatgaaa gctacgctgt
     4561 tcgcggggcg ttccgcccgc cgccgggcgt cgcgccggcg gcgcagggcg cgacgggatt
     4621 agcacgccgc gacttcactg gcgcgccccg gcgggcggcg ccaggcggtt gtatttgcgc
     4681 atgatttcgc gcagccggtc gtgggggata gcgtacgcac gcacgtcgtc ggccccggtc
     4741 atcgtttccg ccgcgagcat tgcgttcgtc acggcctctt ccgtcgcctg gactgcggcg
     4801 ctgaaaagcg ggtcgagcct ttcgttcggc agcatagtga gcgcgacggt gcctttgtcg
     4861 gccgccgccc cggcgttggc cgtggagaag gcgacgaaaa tgtcgccgga aaaattgctc
     4921 gctatgctcc cctcccggcc gaggccgagc gcggcccgct tgaccagccg gtcgagctgg
     4981 tgcggcagca ggggggcgtc cgtcgcgacc acgatgatga ttgagcccag ctccggctgc
     5041 gggcgctccg gcggcgcccc cgcctgcccg caacggggca agccccgcag gaactcctgc
     5101 gaaggggctt cggcgcccgc cgcgcagacc gtcgcgtcgg ggaactcaat gcccacggga
     5161 acgccggcga tgcgcaggcc gcggcgcgac ccgtagttac actggactag cacgccgacg
     5221 gtgtagccgc ccgactccgc cgccagcacg cgcgacgaag tgccgatgcc ccccttgaag
     5281 ccgttgcaga gcatccccgt cccgccgccg acgttaccct ccgcgacgcg cccgcccgcc
     5341 gccccgtcca gagcggcgaa gacgtgctgc ggcttgacgt gaaagccgtt gatgtcgttg
     5401 aggacgccgt cgtaagtttc cgccaccacc gggtaggtga aaaggaattt gcggccgttc
     5461 ttgatttccc agtctatggc cgcgtcgcgc acgacgccca cgctgtgagt gttcgtgatg
     5521 agtatcggcc cctccaggaa gccggactcc ctgacccacg tcgtgccggt catctcgccg
     5581 ttgccgttca gagggaacca ggcggcgaag accgggtcga acgactttct gccgcgcggc
     5641 agaaccgcgg tgacgccagt gcgcacgggc cctttcccca ccaccagccg gccgctcccc
     5701 gaaatcaaag tcgtgtgccc gacctccacg cccgccacgt ccgtaatcgc gttatgcgcc
     5761 cccggcaggc cctcgaacgg gacgcccaac tcacgcgccc tcggtttggc ctgggcaaag
     5821 gacggcccgg cgtcaacgac gccccacgcc gcggcgcccg cgagcaaagc ggtcagcaga
     5881 agcacgcgcc ccggcagtaa agtgattttc cgaatcatcc gctctccctc cctccgccgc
     5941 ggggccgcgg cagaagccgc agggtcacgc actcttttat ttaaccgtcg cctgcttccg
     6001 cccgaccgcg aacaggctct tagacgagcg cacgtacatc acgccgtccg acagggcagg
     6061 cgttgccatc agcagctccc ccatcgagtt cgtcgcgacg tgggcgaagc tgcggccggc
     6121 cttgacgacg agcatctcgc cgtcctcgtt cgagaggtag agcttgccgt cggcggccac
     6181 cggcgacgcg ctgaagccgc tgcccacgag cggcagccgc tgccggtata tctcctcgcc
     6241 cgtccgcagg tcgtatgcgt cgaggaggcc gttgttggcg agcacgtaga gtatgccgtt
     6301 atagacgagc ggcgtcggca tgtacgggcc gcggcccgtg cggctccacg cgaccgcctc
     6361 gctctgcgac ttgccttcgg gcagggtcag gtctccgcgg gcgccggcac gcaccacgaa
     6421 gatggggcgc tcgggcgcgc ggccgctggc cacgacgaac aggccgtcgg agaagatggg
     6481 ggtcggcgcc gttatcttcg agctgcgccc gagccgccac aactccttcc ccgtgcgggg
     6541 gtcgtaaccc cgtatgtagt tcgacgcgtt cgcgaccaac tccggccccg aaggagtcag
     6601 cgcgacggtc ggcgtccccc acgacggtaa ctcttcgcgg tcggtcttcc acacagtcct
     6661 gccggtgccg gcgtccagtg caaggatgaa cgagtcatgc tgggtgtcgc actgtaggat
     6721 aaccaggttg ttccagatga cgggcgagct ggccggcccc cattcgtagg tagggatgtc
     6781 gtaggcgccg aggtcgaggc ggcccaggtc aaccttccag aggaagcgcc cgtcaacgtc
     6841 gtaggcgtaa acgccttgcg agccgaacca cgctacgacc gtgcggccgt ccgtggcggg
     6901 ggtcgagttg gcgtaggtgg atttgatgtg gcgcttgtcc acgggcgcgc cctcgaaggc
     6961 cgtgcgctcc cagaggactt tgccggttcg cttgtcgagc gcgtaaagcg cccagcggtg
     7021 gcgcgagcga tcctgcgagg cgtcgccgtc cccgtacagg ccggggcgga aggtcgcgtt
     7081 cggctcgctg ctgacggcgc tcgtgacgaa gattctgctt ccccagacga cggggctcga
     7141 gtgcgcgagt ccggggatcg gcgtgcgcca caggatgttc tcgcccgtcc tgccgtccca
     7201 gcggtcgggg aggctctgcc cgtcagccac cccggaagcc tgcggcccgc ggaaggaggg
     7261 ccaactcccc ctcgggctgc ccggctcgag gcgcgagggc gcgcgcgcgc cggccgtcct
     7321 cacgatgcgc cgcgcgggcg cggctttcat ctccccggcg ggcgaccagg tgctgcggtc
     7381 gagaatcatt cgtcgcggcg tgcaaccgtc cgagacgagg tcgaagctca cacggccgcc
     7441 gtccacccgc acacggtatc gccctgggcc gtcgcagccg ggcgggccgc ccggctgcga
     7501 taacagctca acctcgtcgc cctccctttt ccaccggccg ttaatcgagg gccagcggtc
     7561 gccctccagt gtgaacgcgc cgtcggggcc gaaccgcgcg acgaagacgc cgaacttcaa
     7621 cgggtaagac ggcacctgcg cgcccgcctg ttggccggcc gcgggcgcgg tgccggcggc
     7681 gctcacaatc acggccgcga gcgccagcgc gagccctagc cttccgcaat caattctttt
     7741 cattcgcctc cgttcaccga gccagccgcc cggacagcca gaatgacccg ctcaccaccc
     7801 cgccccgcac aatcggcccg ttcaacagaa ccgggtcggc caccacatca atctctccgc
     7861 cgagcgtgct gaccttcgcc caacagaact cactccccgt taccgggtta gccaatattg
     7921 ccgtctccaa cacatgcccc gtgaagatcg cgtaagcctg cgggggctcc ggggattcgc
     7981 cgccgggcgt gaacaaccct gaaggtatga acgactcagg cgcgaacttg acctctccgg
     8041 gctgtgaccg ttcataagat tcgtcgctct cgaaggactg caactcgtgc gcgaacgccg
     8101 ccagccgcgc ccgcgaaatg gccgggaggt ttaggtcgtc atgcagcttg taatcggggg
     8161 cgtcgaagac gaacgggtat tcacccgcct ccgggtcttc accttggggg tcggcccagg
     8221 catagaagcc gccgtctaac ggttgttcct ccgacctgac aacccgtcgc gtcaggccga
     8281 cgcgcattaa cgcgctcccg ctgaagtgag ggctgaggcc cgtcacactt tcttccccgt
     8341 cgagttgaag ccacaactcc acacccccgc cgggagacca cctcacgtag gcgccgcccg
     8401 cgacctcaat ccgaaggccc tcctcataag ctcgtaaggc gagctgttga tattcctctt
     8461 ccgtttcgat cagaaaacct atatcggaca tgtgactcgg catgactttt ctctaccgaa
     8521 gctgttgcga tgagagtccg ccctacgccg ggcattagcc gcgctctaaa tataactggg
     8581 gtttttaagg aagtggggtt gacgcccaag actcgtttca gcttttcgcg gctcgacacg
     8641 ctcgtactgc gcgccgcgac aagggcatca tgcgcccgcc ctcggagtgc gcgatcaaag
     8701 agctgctccg agggcgggcg cgcccggcga acatagtcga gctcgacccc ggcaacgaag
     8761 gcggcgcgag cccaacgagc ttaagacctt ccccccgagc ccgccccatg ctcgtcgggc
     8821 gcgagtcgct cattccacgt agaagccgat tcgttcgacc gccgtgcggt tggacgttcg
     8881 gtcggtggcg gtcagttgca gggtgtagcg gcccggcggc agttggtcga gcgaaagctc
     8941 cgaccagaag ggcaggcgcg cggggtcgtc tgctagcggg actttaaacg cctgcgtggt
     9001 aataagcggc gtgggcccgc gaaagacctg cgcctgaagc tgcacgtcac ggccccccgc
     9061 gccgcccgcg ggcgcggagt tgtaaacgta cgtctggaag cgcaggacgc tggcgcgcgc
     9121 gaagcggcgg tcaacgtcaa ccgcgacggc gcgcggccgg cccgcttccc cttcagcggg
     9181 ggcgccctgc gagtcgcgct cgccgaggag gatgctgctt aggacgaggc cgcctttcga
     9241 gag
//
LOCUS       DASPKR010000341         2345 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1857608, whole genome shotgun sequence.
ACCESSION   DASPKR010000341 DASPKR010000000
VERSION     DASPKR010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2345)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2345
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1857608"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VD968_09265"
     CDS             <1..375
                     /locus_tag="VD968_09265"
                     /inference="COORDINATES: protein motif:HMM:TIGR00266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00266 family protein"
                     /protein_id="HYE14615.1"
                     /translation="VDTKWGGAKSFFGGEGLFVLQVTGTGLLLVSSFGAIHRKRLQPG
                     ERYVVDTGHLVAWEGTTQYSLRKAAQGFFRSMMSGEGIVAEFVGPGEILIQTRNLAAF
                     AGLLKPFFPTQGGGGGGWSVGS"
     gene            404..1378
                     /gene="rocF"
                     /locus_tag="VD968_09270"
     CDS             404..1378
                     /gene="rocF"
                     /locus_tag="VD968_09270"
                     /EC_number="3.5.3.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004053 - arginase activity [Evidence
                     IEA];
                     GO_process: GO:0019547 - arginine catabolic process to
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase"
                     /protein_id="HYE14616.1"
                     /translation="MNNTLTEQPRAAAEKGGLPGSGRRVSIVGVPCGFGQSIAGVDLG
                     PAAMRVARLRQRLASLGYEVRDLGDIRVECSDLPQPPPQDRLKYLGQITEACTALAAD
                     VRKVLADGETPVVLGGDHSIAIGTVSGVTSFYRERGETVGLIWFDAHADMNTPETSPS
                     GNIHGMPLAALLGYGAPELTRLGGFAPKIDPALCAHIGARDVDPGERELIRRLGIRFF
                     TMREIDERGMKACIEEAIAIASKASAGYHVTFDVDALDPGDAPGSGTVVRGGLTYREA
                     HLAMEKIAEAGGALSLEMVEINTALDINNRTAELGVELILSALGKTIL"
     gene            1407..>2345
                     /locus_tag="VD968_09275"
     CDS             1407..>2345
                     /locus_tag="VD968_09275"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF002528.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase family protein"
                     /protein_id="HYE14617.1"
                     /translation="MPEKIRVGVIFGGRSGEHEISVRSARSVVEAFDRERYEVIPLAI
                     TKEGRWLSPAESARSLPEEARRFLPEAVGDARTAVTIVGDPSRAGLHRLDADGQAGAP
                     KPLDVIFPVLHGTFGEDGTIQGLLEMAGVPYVGCGVLASSCGMDKVAMKALFREAGLP
                     VCKYTWFLRSEWERDPEPVSRRVASEIGFPCFVKPANLGSSVGVSRASDERTLADAVA
                     LAARYDRKVMVEEGLDAREIECAVMGNDEPEASLPGEYVVHDEQAKFLDYTEKYSSTG
                     HVEFVVPAPLTEELTERVRSMAVVAFKAVDGAGFARV"
BASE COUNT          368 a          763 c          831 g          383 t
ORIGIN      
        1 gtggacacca aatggggcgg cgctaaatcc ttcttcggcg gcgaaggtct cttcgtgctg
       61 caagtcacgg gcaccgggct cctgctcgtc tcatccttcg gcgcgattca tcgcaaacgc
      121 cttcagccgg gcgagcgtta cgtcgttgac acgggccatc tggtcgcgtg ggaaggaacg
      181 acgcaatact ctctgcgcaa ggctgcacaa ggatttttcc gcagcatgat gagcggcgaa
      241 ggcatcgtcg cggagttcgt ggggccgggc gagattctta tacagacgcg caacctcgcg
      301 gccttcgccg gcctgctcaa gcccttcttc ccgacgcagg gcgggggcgg gggcggctgg
      361 agcgtcggta gctgacaggg cgcgtggaga ttttgcgggc cttatgaaca acactttgac
      421 cgaacagccg cgcgcggccg cggagaaggg tggcctcccc ggttcggggc gccgcgtgag
      481 catcgtcggc gtcccctgcg ggttcggcca gtcgatagca ggcgtcgacc ttgggccggc
      541 ggcgatgcgc gtcgcgcgcc taaggcagcg cctcgctagc ctcggctacg aggtgcgcga
      601 cctcggcgac atacgcgtcg agtgctctga cctgccgcag cccccgccgc aggaccgtct
      661 caagtacctc ggccagatta cggaggcctg cacggcgctc gcggcggacg tcaggaaggt
      721 gctggctgac ggcgagacgc ccgtcgtgct cggcggcgac cactcgatcg caatcggcac
      781 ggtgtcggga gtcacgtcct tctaccgcga gcgcggcgaa acggtcggcc tcatttggtt
      841 cgacgcgcac gctgacatga acacgccgga gacgagcccc tcggggaaca tacacggcat
      901 gccgctcgcg gccctgctcg gctacggggc gccggagctt acgcgcctcg ggggcttcgc
      961 gcccaagatc gaccccgccc tctgcgcgca catcggcgcg cgcgacgtcg accccggcga
     1021 gcgcgagttg atacgccgcc tcggcatacg cttcttcacc atgcgtgaga ttgacgagcg
     1081 cgggatgaag gcctgtatcg aagaggcgat agcgattgcg tcgaaggctt cggccggcta
     1141 ccacgtcacg ttcgacgtgg acgcgctcga tcccggcgac gcgcccggct ccggcacggt
     1201 cgtgcgcggc gggctgacat accgcgaggc gcatttggcg atggagaaga tcgccgaggc
     1261 cggcggcgcg ctctcccttg agatggtcga gataaacacg gcgctcgaca tcaacaaccg
     1321 cacggcggag ctgggcgtcg agctgattct ctcggcgctg ggcaagacga tactttaatg
     1381 gtgcggcctc cctgagagcc ttgggcatgc cagagaagat acgtgtcggt gtgattttcg
     1441 ggggccgctc cggcgagcac gaaatttccg tgcgctccgc gcgctcggtg gtcgaggcgt
     1501 tcgaccgcga gcgctacgag gtcatacccc ttgcgataac gaaggagggg cgctggctct
     1561 cgcccgccga gtcggcgcgc tctctcccgg aggaggcgcg caggttcctg cccgaggcag
     1621 tgggcgacgc gcggacggcc gtcacaatcg tcggcgaccc ctcgcgcgcg ggcctgcacc
     1681 gcctcgacgc agacggccag gcgggggcgc cgaagccgct cgacgtaatc ttccccgtgc
     1741 tgcacggcac gttcggcgag gacggaacga ttcagggcct tctggagatg gcgggcgtgc
     1801 cttacgtcgg ctgcggcgtg ctggcgtcta gctgcgggat ggacaaggtc gcgatgaagg
     1861 cgctcttccg cgaggcgggg ctgcccgtat gtaagtacac ctggttcttg cgctccgagt
     1921 gggagcgtga ccccgagccc gtctcccgcc gcgtggcttc cgagatcggc ttcccgtgct
     1981 tcgtcaagcc cgcgaacctc ggctcgtcgg tcggcgtttc tcgcgcgtcg gacgagcgca
     2041 cgctcgccga cgcggtcgcg ctcgccgcgc gctacgacag gaaggtgatg gtcgaggagg
     2101 ggctggacgc gcgcgagata gagtgcgccg tgatgggtaa cgacgagccg gaggcgagcc
     2161 tccccggcga gtacgtcgtc cacgacgagc aggcgaaatt cctagactac acggagaagt
     2221 attcgagcac gggccacgtc gagttcgtcg tccccgcgcc cctgaccgaa gagctcacgg
     2281 agcgcgtgcg gagcatggcc gtcgtagcct tcaaggccgt ggacggcgcc ggcttcgcgc
     2341 gcgtt
//
LOCUS       DASPKR010000342         3197 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_304437, whole genome shotgun sequence.
ACCESSION   DASPKR010000342 DASPKR010000000
VERSION     DASPKR010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3197)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3197
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304437"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1092)
                     /locus_tag="VD968_09280"
     CDS             complement(<1..1092)
                     /locus_tag="VD968_09280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HYE14618.1"
                     /translation="MAKHDLSKFRNIGIMAHIDAGKTTTTERVLYYTGVSHKIGEVHE
                     GTATMDWMEQEQERGITITSAATTCFWKRSGVEHRINIIDTPGHVDFTMEVERSLRVL
                     DGAVAVFDGVAGVEPQSETVWRQADKYGVPRICFINKLDRAGASFDRSFQSIITRLGA
                     NPVALQIPIGLEDQFKGVVDLITMKALIWMDETKGAEYETTDIPAELQEQAAEMRHKL
                     LEAAAEADESLMERYLEDEGASFTEAEIRAALRKGTIAIKLVPVVTGSAFKNKGVQTL
                     LDAVVDYLPSPLDIPAIEGTSPKSGETEARPADPSAPFSGLVFKIMADKHLGQLSFVR
                     IYSGTVRGGSYVYNSVKGTKERVGRLMRMH"
     gene            complement(1127..1597)
                     /gene="rpsG"
                     /locus_tag="VD968_09285"
     CDS             complement(1127..1597)
                     /gene="rpsG"
                     /locus_tag="VD968_09285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013054923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HYE14619.1"
                     /translation="MPRRRVVDRREVLPDPVYNSPLVTKFINGLMWDGKKSVAEGIFY
                     RALVQIGEKSGEDPLKMFKRAIDNVRPTVEVKSRRVGGSTYQVPIEVPQERRGSLAIR
                     WIVGAARARGEKTMTDRLAGEMLDAANNRGNAVKKKDDTHRMAEANKAFAHYKW"
     gene            complement(1623..2033)
                     /gene="rpsL"
                     /locus_tag="VD968_09290"
     CDS             complement(1623..2033)
                     /gene="rpsL"
                     /locus_tag="VD968_09290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HYE14620.1"
                     /translation="MPTINQLVRKGRQAVKYKTASPALQQSPQKRGVCTRVYTQTPKK
                     PNSALRKVARVRLTNGVEVTTYIPGVGHNLQEHSIVLIRGGRVKDLPGVRYHVIRGTL
                     DSVGVADRKQGRSKYGAKRPKGGAAAGAAKGGKK"
     gene            2613..>3197
                     /locus_tag="VD968_09295"
     CDS             2613..>3197
                     /locus_tag="VD968_09295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14621.1"
                     /translation="MRFNLDEYVTVHERIERFYAKYPEGRITTTILEHNAETGFVLIK
                     AEVFRGHDDALPAATGHAYELRSSGHVQQGSYVEVCETSSVGRALALLGFEVKRGVAS
                     REEMEKVARRQSERPTSKTPEKPAPAPPAPPKPVSPARAASPAPAAPADEEPPGLDEQ
                     ILQAAGELGYDAAKVRRWVNQKFEVAGGLASLTDH"
BASE COUNT          503 a         1049 c         1029 g          616 t
ORIGIN      
        1 gtgcatgcgc atgaggcgcc ccacgcgctc cttcgtcccc ttcacggagt tatagacgta
       61 ggagccgccg cggacggtgc cggagtagat gcgcacgaac gagagctggc cgaggtgctt
      121 gtcggccatg atcttgaaga ccagaccgga gaacggcgcc gaggggtctg cgggccgcgc
      181 ctccgtctcg cccgacttcg ggctcgtccc ctcaatcgcg ggtatgtcga gcggcgaggg
      241 caggtagtcc acgacggcgt cgagcagcgt ctgcacgccc ttgttcttaa acgccgagcc
      301 ggtgactacg gggacgagtt tgatggcaat cgttcccttg cgcagggccg cgcgaatctc
      361 cgcctcggtg aagctggcgc cctcgtcttc gaggtagcgc tccatcaggc tctcatcagc
      421 ttcggcggcg gcctccaaga gcttgtggcg catctcggcg gcctgctcct gaagctcggc
      481 ggggatgtcg gtcgtctcgt actcggcgcc cttcgtctcg tccatccaga tgagcgcctt
      541 catcgtgatt aggtcaacga cgcccttgaa ctggtcttcg aggccgatgg ggatttgcag
      601 cgcgacgggg ttcgcgccca gccgcgtgat gattgactgg aacgagcggt caaagctggc
      661 gcccgcgcgg tcgagcttgt tgatgaagca gatgcggggg acgccgtact tgtcggcctg
      721 gcgccagacg gtctccgact gcggctcgac gcccgcgacg ccgtcgaaga cggccacggc
      781 gccgtcgagc acgcgcaggg agcgctcgac ctccatcgtg aagtccacgt ggccgggcgt
      841 gtcaatgatg ttgatgcggt gctcgacgcc cgagcgcttc cagaagcagg tcgtcgcggc
      901 gctggtgata gtgatgccgc gctcctgctc ctgctccatc cagtccatcg tcgcggtgcc
      961 ctcgtgcacc tcgccaatct tgtgcgagac gcccgtgtag tagagcacgc gctcggtcgt
     1021 ggtggtcttg ccggcatcaa tgtgcgccat gatgccgatg ttccggaact tactcaggtc
     1081 gtgcttagcc ataacgggac cccgtgaact gtgggccgac gcccgcttac cacttgtagt
     1141 gggcgaaggc cttgttggcc tcggccatgc ggtgcgtgtc gtccttcttc ttgacggcgt
     1201 tgccgcggtt gttcgccgcg tcgagcatct cccctgcgag gcggtcggtc atcgtcttct
     1261 cgccgcgggc gcgggcggcg cccactatcc agcgtatggc gagagagcca cggcgctcct
     1321 gcgggacttc gatgggcacc tggtaggtcg agccgccgac gcggcgcgac ttgacctcga
     1381 ccgtgggccg cacgttgtct atggcgcgct tgaacatctt caaggggtct tcgcccgact
     1441 tctcgcctat ctggacgagc gcgcggtaga aaatcccctc ggccacgctc ttcttgccgt
     1501 cccacatcag cccgttgatg aacttcgtca cgagcgggct gttatagacg gggtcgggca
     1561 acacctcacg tctgtcaact actcttcttc tcggcatatc tttaaatggg tgtcaggctg
     1621 tcttacttct taccgccctt ggccgcgccg gccgccgcgc cgcccttcgg acgcttggcg
     1681 ccgtacttcg agcgcccctg cttccgatcc gcgacgccca cgctgtcgag cgtgccgcgt
     1741 atgacgtggt agcgcacgcc cggcaggtct ttgacgcgcc ccccgcgtat gagcacgatg
     1801 gagtgctcct ggaggttgtg gccgacgccg gggatgtagg tcgtgacctc gaccccgttc
     1861 gtcagtcgga cgcgcgcgac cttgcggagc gccgagttcg gcttcttggg cgtctgcgta
     1921 tagacgcgcg tgcagacgcc gcgcttctgc ggcgactgct gtagcgccgg gctggccgtc
     1981 ttgtacttga cggcctgccg gcctttgcga acaagctggt tgatggtcgg cactgctagt
     2041 cctcgtcctt cttacccgta gggggcgccc ttcgaggcgc aatgggccgc cctttcctgc
     2101 ctcttaccgg aactggcccg gcagtcagcg caagagcttg gtgcccttgg ttttaattaa
     2161 gatttaggga cgttctggct tcaaaatggg tgtggattct ggcctcccta gggccaaaac
     2221 ttttctgtgg cgtggcattt aataaggcgc ggggacgagc ggccgtccgc ctccccgtcg
     2281 aaatcagccc ttctcgcggt cggccgcccc cttttcgggc gcgggccgcg gaagtttacg
     2341 ccacaatatt tgtcaaacgg cggcgcctgc gttcgcgcag ccgggcaacg cctccacacc
     2401 ggccaaaact ttccgagcgt tgcactattg ggaaatggac tgcgagtcca aacgagagac
     2461 tatacggcca cggccacggt ctgtcaagcg cgcgccgggc cgcccggccg ccgcgcctaa
     2521 gtatttcttc tttccagact tttctgctaa agtctgcccc caacgcagga tgtgcgccca
     2581 cgggcgttcc cgctgaaagg cgaaaatctt agatgcgttt taaccttgac gagtacgtca
     2641 ccgtccacga gcggatcgaa agattttacg caaaataccc ggaaggccgc ataaccacga
     2701 ccatacttga gcacaacgcc gagaccggct tcgtccttat aaaagccgag gtcttccgcg
     2761 gtcacgacga cgccctgccg gccgccacgg gccacgccta cgagctccgc agctccggcc
     2821 acgtgcagca gggcagctac gtagaggtgt gtgaaacgag ctcagtaggc cgggcgctcg
     2881 cgcttttggg cttcgaggtc aagcgcgggg tcgccagccg cgaggagatg gagaaggtcg
     2941 cgcggcgtca gtcggagcgc ccgacctcga aaacgcccga aaaaccggcc ccagcgcccc
     3001 cggcgccgcc caagcccgtt tcccccgcga gggcggcgag cccggcccct gcggcccccg
     3061 cggacgagga gccgcccggg ctcgacgagc aaatcctaca ggcggcgggc gagctcggct
     3121 acgacgcggc gaaggtgcgg cgctgggtca accagaagtt tgaggtcgcg ggcgggctcg
     3181 caagccttac cgaccac
//
LOCUS       DASPKR010000343         3193 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_176562, whole genome shotgun sequence.
ACCESSION   DASPKR010000343 DASPKR010000000
VERSION     DASPKR010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3193)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3193
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176562"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1421)
                     /locus_tag="VD968_09300"
     CDS             complement(<1..1421)
                     /locus_tag="VD968_09300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HYE14622.1"
                     /translation="MRLSARLCAVAALAGLAYFAAGSISTAQVQPVTAGQVIISELRY
                     RGPNGIRDEFVEIYNNTDSPITVQAIDASAGWGLAASDGNINATFCVIPNGTVIPARG
                     HFLCANLDPDFGSGYSLSQYPSGSPSLPVAAVPTAAAQSPEAAAVLPPQFLPTSHDAA
                     YTIFDDVPDGFGIALFTTASTANQNAATWLDAFGFTQSPALFKEGNGFPTIPSTNNEH
                     TLYRDLRQGKPKDTNDNAADFRFVATTGSIQTQLNGAPGPENLRSPVVNNDQISLFLL
                     DPAVSSASLPNRERTSNVEPNADLGTLLVRRRFQNNTGQNVTRLRFRIVNFTTRGTPP
                     SECGGTPCADLRALTSDDADAGDPGHLVATSAGSVTVRGVRLEDNPPITPGGGGLNSS
                     LSADYINMATPLLPGNSVNIEFKLGIMAHGPFRFIINIEAQTAPAGPVIVAPTNRLSA
                     KSTVKGVRKVPSAPAAKTPATRAP"
     gene            complement(1626..2936)
                     /locus_tag="VD968_09305"
     CDS             complement(1626..2936)
                     /locus_tag="VD968_09305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14623.1"
                     /translation="MRYALRPRAVAAACACVLYFSAAGVSSARQTPVTGGQVLISELR
                     WRGPGRPVAQPTASPAPTPNRVEDEFVEIYNNTDQEIVVQATDGSGGWAVAASNGQFT
                     STLFVIPNGTRIPARGHFLGANSNGYSLGGYPSGNPDVPPVTCPPSCPLPSPTPQLFA
                     AATPDATWAFDVPDGSGVALFSTSDPANMSGATKLDAFGYTNTPSPYREGTGFPAVVR
                     SYSEHAYYRDLRGGLPKDTNDNAADFLLVGTPRNIQVRLLGAPGPENLRSPVVNNAGI
                     TGRLLDPAASASSPPNRERINTPETNADFGTLRVRRTFTNNTGSPVTRLRFRVVNITT
                     AGTPDSECGGTPCADLRALTSQDGVVTLSNQTPVLVRGVRLEENPPLLPQGGGYNSSL
                     SADFINLSQPLLPGASVNIEFKLGVMRDGPFRFLINIEAQSATD"
BASE COUNT          475 a          959 c         1218 g          541 t
ORIGIN      
        1 ggcgcccttg tggccggcgt cttggcggcc ggagcgctcg gaactttgcg cacgcccttg
       61 accgtggact tagcgctcag cctgttcgtg ggcgcgacga tgaccgggcc cgcgggcgcg
      121 gtctgggcct cgatgttgat aatgaagcgg aacgggccgt gggccatgat gccgagcttg
      181 aactcgatgt tgacgctgtt gcccggtaac agcggggtcg ccatgttgat gtagtcggcc
      241 gagaggctgg agttcaggcc gccgcccccg ggcgttatcg gcggattgtc ctcgagcctc
      301 acgccgcgca ccgtgaccga gccggccgac gtagccacca gatggccggg gtcgcccgcg
      361 tctgcgtcgt ccgaggtcag ggcgcggagg tcggcgcacg gagtcccgcc gcactcgctc
      421 gggggcgtgc cgcgcgtcgt gaagttgacg atgcggaacc gtaggcgcgt gacgttctgg
      481 cccgtgttgt tctggaacct tcggcggacg agtagcgtgc cgaggtcggc gttcggctcg
      541 acgttcgagg tgcgctcgcg attcggcagc gaggcgctgc tgacggccgg gtcgagcagg
      601 aacaggctta tctggtcgtt gttgacgacg gggctccgaa ggttctcggg gccgggcgcg
      661 ccgttgagct gcgtctgtat cgagccggtc gtcgccacga agcggaagtc cgcggcgttg
      721 tcgttcgtgt ccttcggctt gccctgccgc aggtcgcggt agagcgtgtg ctcgttgttg
      781 gtggacggga tcgtcgggaa cccgttgccc tccttgaaga gcgccggcga ctgcgtgaag
      841 ccgaaggcgt cgagccacgt ggccgcgttc tggttcgcgg tagaggccgt cgtgaagagc
      901 gctatgccga agccgtcggg cacgtcgtcg aaaatcgtgt aggcggcgtc gtgcgaggtc
      961 ggcaggaact gcggcggcag aacggccgcg gcctccggcg actgggcggc cgcggtcggt
     1021 acggcggcga cggggaggct ggggctcccc gaagggtact ggctcaggct gtagccgctg
     1081 ccgaagtcgg ggtcgaggtt ggcgcacagg aagtggccgc gcgcggggat gaccgtcccg
     1141 ttcgggatga cgcagaaggt ggcgttgatg ttcccgtccg acgccgccag gccccacccg
     1201 gcggacgcgt caatcgcctg gacagttatg ggcgaatccg tgttgttgta aatctcgacg
     1261 aactcgtcgc ggatgccgtt cgggcctcgg tagcgcagct cacttatgat gacttggccg
     1321 gccgtgacgg gctgtacctg ggctgtggaa atgctgccgg cggcgaagta ggcaaggccg
     1381 gctagggcgg cgacggcgca caggcgcgcg gacagacgca taagtcctcc ttagacgaga
     1441 gacgggttga aactgccggg gctggcaggg gcttaaactt acagtttgcc gttgattgcg
     1501 aaaaaacttc ccgcgcatat tagcatcaaa acaaacgacc aggaaccatt ttaaacgccg
     1561 cgcgcgaaac aaggcgcgcg agcccgcccg gccgggctcg cgcgggcttc cggcgggctc
     1621 ttcggttagt cggtcgcgct ctgcgcctcg atgttgatga ggaagcggaa cgggccgtcg
     1681 cgcatcacgc cgagcttgaa ctcgatgttg acgctggcgc cgggcaggag cggctgagag
     1741 aggttaatga agtcggccga caggctggag ttgtagccgc cgccctgcgg caggagcggc
     1801 gggttctctt cgagcctcac gccgcgcacc aacaccggcg tctggttcga gagggtgacg
     1861 acgccgtcct gcgaggtgag cgcgcgcagg tcggcgcagg gcgtgccgcc gcactcgctg
     1921 tcgggcgtgc cggccgtggt gatgttgacg acgcggaagc gcaggcgcgt cacgggcgag
     1981 cccgtgttgt tcgtgaaggt gcggcgcacg cggagcgtgc cgaagtcggc gttcgtctcc
     2041 ggcgtgttaa tgcgctcgcg gttgggcggc gacgaggccg acgcggccgg gtcgagcagg
     2101 cggccggtaa tgccggcgtt gttgacgacg gggctgcgca gattctcggg gccgggcgcg
     2161 ccgaggaggc gcacctgtat gttgcggggc gtcccgacga gcaggaagtc cgcggcgttg
     2221 tcgttcgtgt ccttcgggag cccgccccgc aggtcgcggt agtacgcgtg ctcgctgtag
     2281 ctgcgcacga ccgcggggaa gcccgtgcct tccctgtagg gcgagggcgt gttggtgtag
     2341 ccgaaggcgt cgagcttcgt ggccccgctc atgttcgccg ggtcgctcgt gctgaagagc
     2401 gcgacccccg agccgtccgg cacgtcgaag gcccatgtgg cgtccggcgt ggccgcggcg
     2461 aagagctgcg gggtcggcga aggcagaggg cacgagggcg ggcacgtcac gggcggaacg
     2521 tcggggttgc ccgaagggta tccgcccagg ctgtagccgt tcgagtttgc ccccaggaag
     2581 tggccgcgcg cgggtatgcg cgtgccgttc gggatgacga agagagtgct cgtgaactgc
     2641 ccgttcgagg ccgccacggc ccacccgccc gagccgtcgg tggcctggac gacgatctcc
     2701 tggtcggtgt tgttgtaaat ctcaacgaac tcgtcctcca cgcggttcgg agtgggcgcg
     2761 ggcgaggcgg tcggctgcgc gaccggccgg cccggccccc gccagcgcaa ctcgctgatg
     2821 agcacctgcc cgccggtcac gggcgtctgc cgggccgaag agacgccggc ggcggagaaa
     2881 tagagcacgc aggcgcaggc cgcggccacg gcgcgcgggc gcagggcgta acgcataaaa
     2941 cctccttagc ggggagaaat ggcccgaatc gtcgggggct cgcgaactgc gaaggggaag
     3001 tgagctcatt gtacagtccg ccgagacggc tggaaaatac gctcgcagac ataagcggca
     3061 cgggggcgtt tggcccgcag ccggccgcca tccccctttc cttgacacta tttagccgcg
     3121 cctttatcat ccttgttttc ggcgggggcc ggaaggcgcg tctgtaaggg tatgttcgag
     3181 tctttatccg aca
//
LOCUS       DASPKR010000344         2466 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_691257, whole genome shotgun sequence.
ACCESSION   DASPKR010000344 DASPKR010000000
VERSION     DASPKR010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2466)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_691257"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            550..1173
                     /locus_tag="VD968_09310"
     CDS             550..1173
                     /locus_tag="VD968_09310"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE14624.1"
                     /translation="MAAPAPQKLTELLIAWSNGSREALDDLFPLVYDELRQIARRYMR
                     RERQGHTLQTSALVNDAYLRLIDQRQVRWQNRAHFFAIAAQMMRRILVDHARAHRYEK
                     RGGGAVKVPLEEAALVMGEKSAEIVALDEALKSLAEVDERRARVVELRYFGGLSNDEI
                     GEVLDISANTVMRDWKMARAWLYEQMGGKPEPEENGGGATNEGPGGG"
     gene            1259..>2466
                     /locus_tag="VD968_09315"
     CDS             1259..>2466
                     /locus_tag="VD968_09315"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HYE14625.1"
                     /translation="MKPERWRRISQLFKVALEKEPGERAAFLEESCPDDDEVRVAVAS
                     LIESHEQAEDEGFIESPLAGSYHHDPPAPAETQPHALPPGTTLGHYRVIEKIGEGGMG
                     TVYLAKDTRLGRRVALKLLPAHMARDEELVRRFEQEARAASALNHPNIITVHDIGEGD
                     GLRYIATEHIEGRTLRERLGEGRFTLDEALYVCEQIAAALAKAHGAGIIHRDIKPENI
                     MVDEDALVKVLDFGIAKQVAEQPSPGAEVSPGGQVKTASGIVLGTSGYMSPEQVRGQP
                     LDGRTDVWSLGCVLFEMLTGRTPFDAKNYGDLVVEILHADAPTVASLTGEAPEELEAV
                     LRRALAKRREDRYGSAKEFRADLHRLRLMGLKLDNGTWTGGGTAAHRSTEIAPRPPEP
                     QPTEQRKQVTV"
BASE COUNT          444 a          855 c          844 g          323 t
ORIGIN      
        1 cgccgcgcgg gccagcgcgg ctaaaaactc gcgcgcgaaa aaaagaagag gcgcacgcgt
       61 gagttgtgcg cctcttcttt tttgccacga ccgccgaggg ggactttgcg agagctcgct
      121 cgggcctctt cgcgtcgtcg ctgacgacgg cgtgcctcgc gcgcccccga ttcgggttgg
      181 gcagggggcc gatagggact tcgaccttat ccagagggta ggtcgagggc gcgctttcgg
      241 cggcacaggg actttaccgt cgccggccgg ggtgggagct ttgaaacctt gctggtcgct
      301 accgtgggcg ccggtgagga ttgggcggct tcgctcgcgg cccgccgccc gtcacccggc
      361 tccacctcct cggccttcat ctatttacgc ggggcggcgg ggcggaaacc accaagcgtt
      421 gcaaaaaaaa tttcgcgccg ggcggccgcg gcgtgaacgg cgcgccggcc ggtgctacaa
      481 tcctgcgctg acgcccgcag agagaggccg cccggcccga acagcacttc gaagggctta
      541 gaagacaaga tggcagcgcc agcgccgcaa aaacttaccg agctgctcat cgcctggagc
      601 aacgggagca gggaagcgct cgacgacctg ttcccgctcg tctatgacga gctgcgacag
      661 atagcgcgcc gctacatgcg ccgcgagcgg cagggccaca cccttcaaac cagcgcgctc
      721 gtcaacgacg cctacctgcg cctgattgac cagcggcagg tgcgctggca gaaccgcgcg
      781 cacttcttcg ccatcgccgc gcagatgatg cgccgcatac tcgttgacca cgcccgcgcg
      841 caccgctacg agaagcgcgg cggcggagcc gtcaaagtcc cgctcgaaga ggccgcgctg
      901 gtgatgggcg agaagtccgc tgagattgtc gcactggacg aggccctgaa gtcgctcgcc
      961 gaggtggacg agcgtcgcgc ccgcgtcgtc gagctgcgct acttcggcgg gctctcgaac
     1021 gacgagatag gcgaggtctt ggatatctcg gccaacaccg tcatgcgcga ctggaagatg
     1081 gcgcgcgcct ggctctacga gcagatgggc gggaagcccg agccggaaga gaacggcggc
     1141 ggcgcgacga acgaagggcc ggggggggga tgaagaaggc ggcgccgccc ccgccgccga
     1201 ccggcgacat cccagtcaca cgcaggacga gcgcccgcgg gccggggcgc ccagagcgat
     1261 gaaacccgaa cgctggcgac gcataagcca actcttcaag gtggcgctcg agaaggagcc
     1321 gggcgagcgc gccgccttcc tcgaagagtc gtgccccgac gacgatgagg tgcgcgtcgc
     1381 cgtcgcctcg ctcatcgagt cgcacgagca ggccgaggac gagggcttca tcgagtcgcc
     1441 tctcgccggc tcctaccacc acgacccgcc cgcgccagcc gagacgcagc cgcacgcctt
     1501 gccccccggc acgacgctcg gccactaccg cgtcatagag aagataggcg agggcggcat
     1561 gggcacggtc tatctggcaa aggacacgcg cctgggccgc cgcgtcgccc tgaagctact
     1621 gcccgcccac atggcccgcg acgaggagct ggtgcgccgc ttcgagcagg aggcgcgcgc
     1681 cgcctccgcg ctcaaccacc ccaacatcat caccgtccac gacataggcg agggcgacgg
     1741 cctgcgctac atcgccaccg agcacatcga gggccgcacg ctccgcgagc gcctcggcga
     1801 gggccgcttc acgctcgacg aggcgctgta cgtctgcgag cagatcgcgg ccgcgctcgc
     1861 gaaggcccac ggcgccggga tcatccaccg cgacataaag cccgagaaca taatggttga
     1921 cgaggacgcc ctcgttaagg tgctcgactt cggcatcgcc aagcaggtcg ccgagcagcc
     1981 ctcgcccggc gccgaagtct cgcccggcgg ccaggtcaaa acggcctcgg ggatagtgct
     2041 cggcacctcg ggctacatgt cgccggagca ggtgcgcggc cagccgctcg acgggcgcac
     2101 ggacgtttgg agcctcggct gcgtcctctt cgagatgctc acgggccgca cgcccttcga
     2161 cgcgaagaac tacggcgacc tcgtcgtaga gattttgcac gcggacgccc ccacggttgc
     2221 gagcctgacg ggcgaggcgc ccgaggagtt ggaagccgtg ctgcgtcgcg cgctcgccaa
     2281 gcgcagggag gatcgctacg gctcagcgaa ggagtttcgc gcagacctgc acaggctcag
     2341 gctcatgggc ctcaagctcg acaacgggac gtggacgggc ggcggcacgg ccgcgcaccg
     2401 ctcgaccgag atagcaccgc gcccgcccga gccgcagccc acagagcagc gcaagcaggt
     2461 cacagt
//
LOCUS       DASPKR010000345        11428 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1598197, whole genome shotgun sequence.
ACCESSION   DASPKR010000345 DASPKR010000000
VERSION     DASPKR010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11428)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11428
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1598197"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VD968_09320"
     CDS             complement(<1..239)
                     /locus_tag="VD968_09320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14626.1"
                     /translation="MKNRRRKAEGGRQKVRGARRPRSTAAARLREAFYCLLPSAFCLL
                     YLAAPAAAQYGRPPMSTMPKGGAPDILKEVKIEQRL"
     gene            complement(236..844)
                     /locus_tag="VD968_09325"
     CDS             complement(236..844)
                     /locus_tag="VD968_09325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14627.1"
                     /translation="MAGGKRKRDSIHETPDVSYITNPDVAHEHTDVPVSPLLKFVAGL
                     TIFTLVICGAMWLMFKYLQGREEAEELTPSPLARQREERLPPEPRLQLAPGFKAKTSD
                     GREVDLAYDIQGPTERAPQPQSEYWVVLADWQHQLHTYGWADEQAGTVRIPVDEAIKR
                     YAAQQQSKQQQQQPGGAQQQAVPGESQPSQSSSGHQAEPRHQ"
     gene            complement(891..2132)
                     /locus_tag="VD968_09330"
     CDS             complement(891..2132)
                     /locus_tag="VD968_09330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14628.1"
                     /translation="MDATGANYNAPEVVGRYRGRALLAGAVLLVLGAALSFVMGGPVH
                     FFRAYLVGFFFVTGVSVGSLAWLMLGHMSGGAWALTSRRLFEAATRVLPLCAVMFLPV
                     VVSLFVHDHGHALYEWTDHALVERDPALRHKSAYLNIPFFIIRGVLYFAVWIGLAYLM
                     SRWSAEQDTTGDPRIRRKMQDMGGPGILLFGLTATFASMDWGMSLEPHWFSTIYGLIV
                     MAGWGLSALALTITVASFLVKHEPMAHAYQPLHFHDWGKLLLAMVMLYAYFSFSQFLI
                     IWAGNLPEETPFYLRRLRGGWQYVGLALILFHFALPFVLLLSRGLKRTPGMLRQVAVL
                     MLFMRAVDLVFLFAPSAHQGAESHFTAADIFRHGLPMLLMAAGLGGLWLWYYFGQLAS
                     RPLLPVGAPDLDKALEAAEHH"
     gene            complement(2136..3065)
                     /locus_tag="VD968_09335"
     CDS             complement(2136..3065)
                     /locus_tag="VD968_09335"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HYE14629.1"
                     /translation="MRRRKAEGGRQPAGARLVPACLLLSAFCLLLSGCRQDMQDTPRH
                     EAYEPGTDKFSERGSSSRTLPEGTVARGFLRENAYLYTGKADAGGAQQATGGMGGTAT
                     GTAGGAVLGSGSPQTQAPGGSASGTVAGAGSTLGAQQTTGTVNVRGNVAGGVPGAAEA
                     AATGGPDVFPFPVTEAVVRRGQERYNAFCSMCHGMTGEGDGMIVRRGFRRPPSYFEDR
                     LQENSSPASHFFDVITNGWGAMPSYDYMIPPEDRWAIIAYIRALQLSRRIRADELTPE
                     ERARVTSDAQKRPDPGAHGTQTQQKDTGQGARH"
     gene            complement(3070..3621)
                     /locus_tag="VD968_09340"
     CDS             complement(3070..3621)
                     /locus_tag="VD968_09340"
                     /inference="COORDINATES: protein motif:HMM:NF023249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3341 domain-containing protein"
                     /protein_id="HYE14630.1"
                     /translation="MAVKKKLRPPTYGIMAEFESPSDAVAAARKVYEEGYRKLDAYSP
                     YPVEELSEAIGVHSTRMPIIVLIGGLLGGIAGYLMQYYIHVLYYPLNVGGKPPHSWPA
                     FIPVTFEMTILGAALSAVFGMLALNGLPEPYHPVFNAPNFALASRDRFFLLVESTDPK
                     FDPEETRGLLQSLGAREVTDVEH"
     gene            complement(3653..5047)
                     /gene="nrfD"
                     /locus_tag="VD968_09345"
     CDS             complement(3653..5047)
                     /gene="nrfD"
                     /locus_tag="VD968_09345"
                     /inference="COORDINATES: protein motif:HMM:NF015851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NrfD/PsrC family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HYE14631.1"
                     /translation="MSSRLDQPHDDVRIHTTPVVIEPGHTFGSVTDKISAIVLRKRTP
                     LGWYVGFLLSAVVASMLAGTVLYLVTTGIGIWGNNQPVGWGFDIINFVWWIGIGHAGT
                     LISAILLLLRQSWRTSINRFAEAMTLFAVACTGLFPLLHTGRPWLAYWMLPYPNTMGI
                     QPQFRSPLMWDVFAVSTYATVSALFWFTGLIPDLATLRDRARSRVGRIVYGMAALGWR
                     GSAKHWARYEMAYLLLAGLSTPLVLSVHTIVSFDFAIGIIPGWHATIFPPYFVAGAIY
                     AGFAMVLTLVIPLRKFYGLEDFITERHLRNSAKVMLATGLIVSYGYMMETFLAWYSAN
                     TYEEFLMRNRFVGPYAFYYWALIVCNVVVPQLLWIRSVRHSNLMLFVIAMFVNVGMWL
                     ERFVIIPISLHRDFLPSSWGFYSPTIWDFTMFFGTIGFFFFLMFLFLRFLPVISIFEM
                     RTLVPEAQIKEEKA"
     gene            complement(5056..8379)
                     /locus_tag="VD968_09350"
     CDS             complement(5056..8379)
                     /locus_tag="VD968_09350"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAT-variant-translocated molybdopterin
                     oxidoreductase"
                     /protein_id="HYE14632.1"
                     /translation="MHIKETFPELYKIRSPRRAEEALAALKDKRGREFWQSLEELAET
                     EEFEELLHREFPRGAAEWGEGTDRRTFLKLMGASLALAGITGCSYQPPETIVPYVSQP
                     EEIVPGKPLFFATAMPFPGGCAPLLVRSNMGRPTKIEGNELHPASLGAADVWAQASVL
                     SLYDPDRSAVVINRGEVRTYTAFLGELATVLEGQRERQGAGLRFLTETVTSPTLAAQL
                     TDILRRFPGARWYQWEPAGPNNGSVGTSLAFGNFATPIYNFAAADRVLSLDSNFLECG
                     PGALRYARDFASRRRVRDGADQRETSRLYAVETTPSNTGFFADHRLAVRPSEMEQIAR
                     AIASGVGVAGGGAPVTGPHSDFVTAVVQDLNAHKGRSVVIAGDEQPPSVHALAHAMNA
                     ALGNAGATVNYVEPVEERPVDQQQELRALVGEIDAGAVEVLIIVGGNPVYSTPADLKL
                     GVERMNRIPLRVHLSLYEDETSELCHWHIPEAHFLESWGDARAYDGTVSIIQPLIQPL
                     YNGKSAYEFLAAFTERPERAGYEILRDYWQRPGAGERAAAGGGQAPQPAPTQTGTGAA
                     PAAAAPAPAPAATPSADFEKNWRRWVHDGFKPDSALKPRSVALGAAYGGAQPAGGGQT
                     TVRQEVIVVPPPQGEGGGEQGYEIVFRPDPTIYDGRFANNGWLQELPKPLTKLTWDNA
                     AVISPATAERLGIGAVPDGAVRRDGAPRRVNYYTAKGGEIRADVLRLNFRGRSVNAPA
                     FILPGQPDGVVTVHLGYGRRRSGRVGGNQREGMRGFDAYALRTSDALWGGGGLGVEVT
                     GEQYPLASTQIHFQMEGREVVRRGTFEQWRRDPELAPEREHTAPPQPAGENRTPLHGE
                     SMYEDYKYEPPMYRWGMAIDLSTCVGCNACVVACQAENNIPIVGKEEVARSREMHWLR
                     VDAYFRGAVERPDGVYFMPVPCMHCENAPCEPVCPVHATVHSAEGLNDMVYNRCVGTR
                     YCSNNCPYKVRRFNFLLYQDWDTPSLKMMRNPEVTVRSRGVMEKCTFCVQRIAYARIE
                     AEKEGRRVRDGEIQTACQATCPTESIIFGDLNDANSRVHKLHSQKSRYDLLADLNTRP
                     RTAYLAAVRNPNPALEGKA"
     gene            complement(8392..9108)
                     /locus_tag="VD968_09355"
     CDS             complement(8392..9108)
                     /locus_tag="VD968_09355"
                     /inference="COORDINATES: protein motif:HMM:NF014176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HYE14633.1"
                     /translation="MQIFHHSTNTLAKLSIFGGLFLAAAAVWVTAEINRSSYNTGQYI
                     EVQQPVQFSHKHHTGDDGIDCRYCHNSVETSSNAGMPPTRTCMNCHSQIWAESPYLEI
                     VRSSWRENKPIVWQRVHDLPDFVYFNHGIHVSKGIGCASCHGRVDDMPAVYQAASLQM
                     EWCLSCHREPERYIRPREQVFNMGWNIEPDEADGVTADAGNTLAENRSPKRLERARQL
                     LVEYRVRDARILTSCSTCHR"
     gene            complement(9471..10592)
                     /locus_tag="VD968_09360"
     CDS             complement(9471..10592)
                     /locus_tag="VD968_09360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14634.1"
                     /translation="MSEEMTTAREKAHRYRCPGCGADLEFEPKGGSLVCPYCGRSEQI
                     VPAAGSVEERSYEEYLRAREGQLTTMAPAALEVRCETCGATVTFTPPQVAGDCDFCGG
                     KIVAQPKSADPLLAPEGVLPFRVSQDDATGSIRRWLSSLWFAPSALKKMASHEGVGGV
                     YIPFWTYDAHTTTSYTGQRGEHYYVTETYTERDAQGNNVTKTRQVRHTRWHPASGTVS
                     RWFDDMLVPATKSLPPARLSALEPWDMGALTTYEPAYLSGYKAQRYQVGLEEGFELAK
                     SAAEPAIREDVRRDIGGDEQRIDQLTTHYSAITFKHLLLPIYVGAYRFRDRVFQVVVN
                     GRTGEVQGERPYSVWKILLFVLAIVAIIVTLALIFGGQS"
     gene            complement(10600..>11428)
                     /locus_tag="VD968_09365"
     CDS             complement(10600..>11428)
                     /locus_tag="VD968_09365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14635.1"
                     /translation="RRAWLYLLAPAIALALGVALFSESEALFWRSLAYLAVFHFVRQQ
                     YGWVALYRARAGEAGRLGRLVDSAAIYMATLYPLIYWHANLPRRFWWFLPGDFAQVPA
                     WVERAAWPAYVLALGAYAVRSAHAWLVRGAGNPGKDLVVLTTALCWYAGIVAYNSDYA
                     FTVTNVVIHGVPYMVLVWWYARGRAPRAGAAYRGLARWPLVFIATLWLMAYAEELLWD
                     RGVWHERAWLFGAAWDVQGLKVLLVPLLALPQVTHYVLDGFVWRRKSNPQLSALSER"
BASE COUNT         1856 a         3721 c         4003 g         1848 t
ORIGIN      
        1 agccgctgct ctatctttac ttccttcagt atgtccggcg cgccgccctt cggcatcgtg
       61 ctcatcggcg ggcgcccgta ctgcgccgcg gccggcgcgg ctaaatagag aaggcagaag
      121 gcggaaggca gaaggcagta aaaagcctca cgtagccggg ctgccgccgt agagcgcggc
      181 cgccgcgcgc cccgaacctt ctgccttccg ccttccgcct tccgccttct gttcttcatt
      241 ggtgcctcgg ctcggcttgg tggcctgagc ttgactgcga aggctgcgac tcgccgggga
      301 cggcctgctg ctgcgcgccg cccggctgct gttgctgctg cttcgactgc tgttgcgcgg
      361 cgtagcgctt aatcgcctca tcaacgggga tgcggacggt gccggcctgc tcgtcggccc
      421 agccgtatgt gtgcaactgg tgctgccagt cggccagaac gacccagtac tcggactgcg
      481 gctgcggggc gcgctcggtc ggcccctgta tgtcgtaggc gaggtcaacc tcgcggccgt
      541 ccgaggtctt ggccttgaag cccggcgcga gttggagccg cggctcgggc ggcaggcgct
      601 cctcgcgctg gcgcgcgagc ggcgagggcg tgagttcctc cgcctcctcg cgcccctgaa
      661 ggtacttgaa catcagccac atcgccccgc agatgacgag ggtgaagatg gtcaagcccg
      721 cgacgaactt caggagcggc gacacgggaa cgtccgtgtg ctcgtgcgcc acgtccgggt
      781 tcgtgatgta ggacacgtcc ggcgtctcgt ggatgctgtc ccgcttcctc ttgcctccgg
      841 ccataaagaa tcaactcctc ggcttctgac ttttaaactc ctgcgcgccg tcagtggtgc
      901 tcggcagctt cgagcgcctt atccaggtcg ggcgctccga cgggcagcag cgggcgcgag
      961 gcgagctgcc cgaagtagta ccagagccaa agcccaccga gccccgccgc catcaagagc
     1021 atcggcaggc cgtggcggaa tatgtcggcc gccgtgaagt gcgactccgc gccctggtgc
     1081 gccgagggcg cgaaaaggaa caccagatca accgcgcgca tgaagagcat gagcaccgcc
     1141 acctgcctga gcatgcccgg cgtgcgcttc aggccgcgcg acaggagcag cacgaacggc
     1201 agagcgaagt ggaagaggat gagcgcgagc cccacgtact gccagccgcc acgcaggcgg
     1261 cgcaggtaga acggcgtctc ctccggcagg ttcccggccc atatgatcag gaactgcgag
     1321 aaggagaagt aggcgtagag catcaccatc gccagcagga gcttccccca gtcgtggaag
     1381 tgcaacggct ggtaggcgtg agccatcggc tcgtgcttga cgaggaagga ggcgaccgtg
     1441 atggtgagcg ccagcgcgct caggccccag ccggccatca ctatcaggcc gtagatagtc
     1501 gagaaccagt gcggctccaa ggacatgccc cagtccatcg aggcgaacgt cgccgtcagg
     1561 ccgaagagca ggatgccggg gccgcccatg tcctgcatct tccggcgtat gcgcgggtcg
     1621 ccggtcgtgt cctgctcggc cgaccagcgg ctcatcaaat acgcgagccc tatccagacg
     1681 gcgaagtaga ggacgccgcg gatgatgaag aaggggatgt tgaggtacgc gctcttgtgc
     1741 cgcagcgccg ggtcgcgctc gactagcgcg tggtcagtcc actcgtagag cgcgtggccg
     1801 tggtcgtgga cgaagagcga gacgactacg ggcaaaaaca tcacggcgca gagcggcagc
     1861 acccttgtcg cggcctcgaa taggcgccgg ctcgtcagcg cccacgcgcc gcccgacatg
     1921 tggccgagca tcagccacgc gaggctcccg accgagacgc ccgtgacgaa gaagaagccc
     1981 acgaggtagg cgcggaagaa gtggacgggg ccgcccatga cgaaggagag cgcggcgccc
     2041 agcactagta agaccgcccc ggcgaggagc gcccgcccgc ggtatcgccc gaccacttcg
     2101 ggcgcgttat agttcgcacc agtcgcgtcc atactctagt gcctcgctcc ctgacccgtg
     2161 tccttctgct gcgtctgcgt gccgtgcgcg ccggggtcgg gccgcttctg cgcgtcggag
     2221 gtcacgcgcg cgcgctcctc gggcgtcagc tcgtcggccc ttatgcggcg gctcaactgg
     2281 agcgcgcgta tgtaggcgat gatggcccag cggtcttcgg gcgggatcat gtagtcgtag
     2341 gagggcatcg cgccccagcc gttggttatc acgtcgaaga agtggctggc ggggctgctg
     2401 ttctcctgaa gcctgtcctc gaagtaggag ggcggccggc ggaagccgcg ccgaactatc
     2461 atgccgtcgc cctcgcccgt catgccgtgg cacatcgagc agaaggcgtt gtagcgctcc
     2521 tgccctcggc gcaccaccgc ttctgtgacg gggaacggaa agacgtccgg cccgccggtc
     2581 gcggccgcct ccgcggcgcc cggcacgccg cccgcgacgt tcccgcgcac gttcacagtc
     2641 cccgtcgtct gctgcgcgcc gagcgtcgag cctgcgcccg cgactgtgcc ggaggccgac
     2701 ccgcccggcg cctgcgtctg cggcgagcct gagccgagga cggcgccccc cgccgtgccg
     2761 gtcgccgtcc cgcccatacc gccggtcgcc tgctgcgcgc cgcccgcgtc ggccttaccc
     2821 gtgtagaggt acgcgttctc cctcaggaag ccgcgcgcga cggtgccttc gggcagcgtg
     2881 cgcgacgacg agccgcgctc cgagaacttg tccgtgcccg gctcgtaagc ctcgtgtcgc
     2941 ggcgtgtcct gcatgtcctg ccggcagccg gaaagcagta ggcagaaggc ggaaagcagt
     3001 aggcaggcgg gaacgagccg cgcgcccgcg ggctgccttc cgccttccgc cttccgcctt
     3061 ctcatctctt tagtgctcga catctgtcac ctcgcgagcg ccgaggctct gtaggaggcc
     3121 gcgcgtctcc tccgggtcga acttcgggtc tgtgctctcg accagcagga agaagcggtc
     3181 gcgcgacgcg agcgcgaagt tcggcgcgtt gaacacgggg tggtacggct ccggcagccc
     3241 gttcaaagcg agcatgccga agacggccga gagcgcggcc ccgagaatcg tcatctcgaa
     3301 cgtgacgggt atgaacgcgg gccagctgtg cggcggcttg ccgccgacgt tcaaggggta
     3361 gtaaaggacg tggatgtagt actgcatcag gtagcccgcg atgccgccga gcaggccgcc
     3421 gatgagcacg atgatcggca tccgcgtcga gtggacgccg atggcctcgg agagctcctc
     3481 gacggggtag ggcgagtagg cgtcgagctt gcggtagccc tcctcataga ctttgcgcgc
     3541 ggccgccacc gcgtccgagg gcgactcgaa ctcggccatg atgccgtagg tcggcgggcg
     3601 caactttttc ttcacagcca cgacgtgcca cctcctgata acagccctgc cgtcaagcct
     3661 tctcctcctt tatctgcgcc tcggggacga gcgtgcgcat ctcgaagatg gagatgacgg
     3721 gcaggaagcg caggaacaag aacatcagga agaagaagaa gcctatggtg ccgaagaaca
     3781 tcgtgaagtc ccagatggtc ggcgagtaga agccccacga cgagggcagg aagtcgcggt
     3841 gcaggctgat ggggataatc acgaacctct caagccacat gccgacgttg acgaacatcg
     3901 ctatcacgaa gagcatcagg ttgctgtggc gcaccgagcg aatccagagc agctgcggca
     3961 cgacgacgtt gcagactatc agcgcccagt agtagaaggc gtaggggccg acgaagcggt
     4021 tgcgcatcag gaactcttcg taggtgttgg cgctgtacca cgcgaggaag gtctccatca
     4081 tgtagccgta ggagactatc aggccggtgg cgagcattac cttcgcggag ttgcgcaggt
     4141 gccgctccgt gatgaagtct tcgaggccgt agaacttccg aagcggtatg accagcgtca
     4201 gcaccatcgc gaagccggcg tagattgcgc ccgcgacgaa gtagggcggg aagatggtcg
     4261 cgtgccagcc cggtatgatg ccgatggcga agtcgaagct gacgatggtg tgaaccgata
     4321 gcacgagggg cgtcgagagc ccggcgagca gaaggtacgc catctcgtag cgggcccagt
     4381 gcttggcgct cccgcgccag cccagtgcgg ccatgccgta aacgatgcgg ccgacgcggc
     4441 tgcgcgcccg gtcgcgcaga gtcgcgaggt ctggaatgag ccccgtgaac cagaagaggg
     4501 cggagaccgt ggcgtaggtc gagacggcga acacgtccca catgagcggg cttcggaact
     4561 ggggctgtat gcccatcgtg ttcgggtacg ggagcatcca gtaggcgagc cacggccggc
     4621 ccgtgtggag cagcgggaag aggccggtgc acgcgacggc gaagagcgtc atcgcctcgg
     4681 cgaagcggtt gatggaggtt cgccacgact gcctgagcag caggagtatc gccgatatga
     4741 gcgtgcccgc gtggccgatg cctatccacc agacgaagtt gatgatgtcg aagccccacc
     4801 cgaccggctg gttgttgccc cagatgccta tgccggtcgt gacgaggtag aggactgtgc
     4861 cggcgagcat gctcgccacc accgccgaga gcaggaagcc cacgtaccag ccgagcggcg
     4921 tgcgcttgcg aagcacgatg gcgcttatct tgtccgtcac cgagccgaag gtgtggccgg
     4981 gctcgatgac cacgggcgtc gtgtgtatgc gaacgtcgtc gtgcggctga tccagtctgc
     5041 tgctcataag gctccttacg ccttcccttc gagtgccggg ttcgggttgc gcaccgccgc
     5101 gaggtaggcc gtgcgcggcc gcgtgttcag gtcggccagc aggtcgtagc ggctcttctg
     5161 cgagtgcagc ttgtgcacgc ggctattcgc gtcgtttaag tcgccgaaga ttatcgactc
     5221 ggtcgggcac gtggcctggc aggcggtctg tatctcgccg tcgcgcacgc ggcgcccctc
     5281 cttctcggcc tctatcctcg cgtaggcgat gcgctgcacg cagaaggtgc acttctccat
     5341 gacgccgcgc gagcgcacgg tgacctcggg gttgcgcatc atcttgaggc tcggcgtgtc
     5401 ccagtcctgg tagagcagga agttgaagcg ccgaaccttg tacgggcagt tgttcgagca
     5461 gtagcgcgtg ccgacgcagc ggttatagac catgtcgttg aggccctcgg cgctgtgcac
     5521 ggtggcgtgg acggggcaga ccggctcgca cggggcgttc tcgcagtgca tgcacggcac
     5581 cggcatgaaa tagacgccgt cgggccgctc gaccgccccg cggaagtagg cgtcaaccct
     5641 gagccagtgc atctcgcgcg agcgcgcgac ctcctccttg ccgacgatgg ggatgttgtt
     5701 ctcggcttgg caggcgacga cgcaggcgtt gcagccgacg cacgtcgaga ggtcaatcgc
     5761 catgccccag cggtacatgg gcggctcgta tttgtagtcc tcgtacatgc tctcgccgtg
     5821 cagcggcgtg cggttctcgc ccgcgggctg cggcggggcg gtgtgctcgc gctcgggcgc
     5881 aagctccggg tcgcggcgcc actgctcgaa ggttccgcgg cggacgacct cacggccctc
     5941 catctggaag tgaatctgcg tggacgcaag cgggtactgc tcgcccgtga cctcgacgcc
     6001 gagcccgccg ccgccccaga gcgcgtcgct cgtgcgcagg gcgtatgcgt cgaagccgcg
     6061 catgccctcg cgctggttgc cgcccacgcg gcccgagcgg cggcgcccgt agccgaggtg
     6121 gactgtgacg acgccgtcgg gctgccccgg cagtatgaag gccggggcgt tgacggagcg
     6181 gccgcggaag ttcaggcgca gaacgtccgc gcgaatctcg ccgcccttcg ccgtgtagta
     6241 gttgacgcgc cgcggggcgc cgtcgcgccg cacggccccg tcggggacgg cgccgatgcc
     6301 gaggcgctcg gccgtcgcgg ggctgatgac ggcggcgttg tcccaggtga gcttcgtgag
     6361 cggctttggc agctcctgga gccagccgtt gtttgcgaag cggccgtcgt agatggtcgg
     6421 gtcggggcgg aagactatct cgtacccttg ctcgccgccg ccctcgccct gcgggggcgg
     6481 caccacaatg acctcctgcc gcacggtcgt ctgcccgccg cccgcaggct gcgcgccgcc
     6541 gtaggccgcg ccgagcgcga cgctcctcgg cttgagggcg ctgtcgggct tgaagccgtc
     6601 gtgaacccac cggcgccagt tcttctcgaa gtcggcagag ggggtcgcgg ccggtgcggg
     6661 ggcgggggcg gcagccgccg gggccgcgcc tgtcccggtc tgcgtcggcg caggctgcgg
     6721 ggcctggccg ccgcccgcgg cggcgcgctc gccggcgccg ggccgctgcc agtagtcgcg
     6781 cagaatctcg tagccggcgc gctcgggccg ctcggtgaag gcggcgagga actcgtaggc
     6841 gctcttgccg ttgtagagcg gctggatgag cggctggatg atgctcactg tgccgtcgta
     6901 ggcgcgcgcg tcgccccacg attcgaggaa gtgcgcctcg ggtatgtgcc agtggcaaag
     6961 ctccgaggtc tcgtcctcgt acaagctcaa gtgaacgcgc agagggattc tgttcatccg
     7021 ctcgacgccg agcttcaggt cggcgggagt cgaatagacg gggttgccgc cgacgatgat
     7081 gagcacttcg accgccccgg cgtcaatctc gccgacgagc gcgcgcagct cctgctgctg
     7141 gtcaaccggc ctctcctcga ccggctcgac gtagttgacg gtcgcgccgg cgttgcccag
     7201 cgccgcgttc atcgcgtgcg cgagggcgtg gacggacggc ggctgctcgt cgcccgcgat
     7261 gacgacggag cgccccttgt gcgcgttcag gtcttggacg accgccgtga cgaagtcgga
     7321 gtgcggcccc gtgaccggcg cgccgccgcc cgcgaccccg acgcccgagg ctatcgcgcg
     7381 cgcaatctgc tccatctcgc tcgggcgcac ggccaggcgg tggtcggcga agaagcccgt
     7441 gttcgagggc gttgtctcta cggcgtatag gcggctcgtc tcgcgctggt ctgcgccgtc
     7501 gcgcacgcgc cgtcgcgagg cgaagtcgcg cgcgtacctg agcgcgccgg ggccgcactc
     7561 aaggaagttc gagtcgagcg agagcacgcg gtcggccgcg gcgaagttgt agatgggagt
     7621 tgcgaagttg ccgaaggcga gactagtccc gacgctcccg ttgttcggac ccgcgggctc
     7681 ccactgatac cagcgtgctc cggggaagcg gcggaggatg tccgtgagct gcgccgcgag
     7741 cgtcggcgac gtgacggtct cggtcaggaa gcgcaggccc gcgccctgcc tctcgcgctg
     7801 gccctcgagc acggtagcca gctcgccgag gaaggccgtg taggtgcgaa cctcgccgcg
     7861 gttgatgacg acggccgagc ggtcggggtc gtagagggaa agcacggaag cctgcgccca
     7921 tacgtcggcg gcgccgaggc tcgcagggtg cagctcgttc ccctcgattt tggtgggccg
     7981 ccccatgttg ctgcgcacga gaaggggcgc gcagcctccg gggaaaggca tggcggtcgc
     8041 gaagaagagc ggcttgcccg gcactatctc ttcgggctgc gagacgtagg ggacgatggt
     8101 ctcgggcggc tggtaggagc agcccgtaat cccggcgagc gcgagcgagg cgcccatcaa
     8161 tttaaggaag gtgcggcggt cggtgccttc gccccactcg gcggcgccgc gcgggaactc
     8221 gcggtgcagg agttcctcga actcttcggt ctccgcaagc tcttctaggc tctgccagaa
     8281 ctcgcggccg cgcttgtcct tgagcgcggc gagcgcttct tcggccctgc gcgggctgcg
     8341 aatcttgtac agctcgggga aagtctcttt gatgtgcatc tacttcaccg cctacctgtg
     8401 gcaagtcgaa cagctcgtca gtatccgcgc gtcgcgcacc ctgtactcga ctaggagctg
     8461 ccgcgcccgc tccagcctct tcggcgatct gttctcggcg agcgtgttgc ccgcgtccgc
     8521 cgtgacgccg tcggcctcgt ccggctcgat gttccagccc atgttgaaga cctgttcgcg
     8581 cggtcgtatg tagcgctccg gctcgcggtg gcacgagagg caccactcca tctggagcga
     8641 ggcggcctga tagacggccg gcatgtcgtc cacgcgcccg tggcacgagg cgcagccgat
     8701 gcccttcgag acgtgtatgc cgtggttgaa atagacgaag tcgggcaggt cgtggactct
     8761 ctgccagacg atgggcttgt tttcccgcca gctcgagcgg actatctcca gatacgggct
     8821 ctcggcccaa atctgcgagt ggcagttcat gcacgtgcgc gtcggcggca tgccggcatt
     8881 cgaggaggtc tcgaccgagt tgtggcagta ccggcagtca atgccgtcgt cgcccgtgtg
     8941 gtgcttgtgc gagaactgga cgggctgctg gacttctatg tactggcccg tgttgtagga
     9001 cgagcggtta atctcggccg tcacccacac ggccgcggcc gcgaggaaca gcccgccgaa
     9061 gatggagagc ttggcgagcg tgttcgtgct gtggtggaag atctgcatgg cgctcccggc
     9121 ttctctcgcg gcccgtcagg ccatcgaaaa aatcgccgcg ggaagagaca cgcaccgaac
     9181 cacacgcgaa acatcacgcg ccaagcccgg gggtgccagc ggtctctcgc ccgacagggg
     9241 aaagcccgaa ccgcgcggct cttcggctgc aacaccaaac ttaagaactg cttgaagttc
     9301 cctagtgata ctactttttt cacgccgggg caagcgcggc gtctaaattt aagtatgaat
     9361 aatctgtggc gaaatggatg aagggaacta ataaaaggga ggcaggaggc aggaggcaga
     9421 agggcgcccg gcagggccgc accttctccc gacttctgcc ttccttcccg tcagctctgc
     9481 ccgccgaaaa tgagggcgag cgtgacgatg atggcgacga tggcgagaac gaagaggagg
     9541 attttccaga cgctgtaggg gcgctcgccc tgaacctcgc cggtgcggcc gttgacgacg
     9601 acctggaaga cgcggtcgcg gaagcggtac gcgccgacgt agatgggcag caggaggtgc
     9661 ttgaaggtta tggcggagta gtgcgtcgtg agctggtcta tgcgctgctc gtcgccgcca
     9721 atgtcgcggc gcacgtcctc gcgtatggcg ggctcggccg ccgacttcgc aagctcgaag
     9781 ccctcctcga gcccgacctg gtagcgctgc gccttgtagc ctgagaggta cgccggctcg
     9841 taagtcgtga gcgcccccat gtcccagggc tcgagcgcgg agaggcgcgc gggcgggagc
     9901 gacttcgtgg ccggcacgag catgtcgtcg aaccagcgcg agacggtgcc ggaggccggg
     9961 tgccagcgcg tgtgacgcac ctgccttgtc ttcgtcacgt tgttgccctg cgcgtcgcgc
    10021 tccgtgtagg tctcggtcac gtagtagtgc tcgccgcgct gccccgtgta gctggtcgtc
    10081 gtgtgcgcgt cgtaagtcca gaaggggata tagacgccgc cgacgccctc gtgcgacgcc
    10141 atcttcttca gggcgctcgg cgcgaaccac agcgacgaga gccagcgcct tatcgagccg
    10201 gtcgcgtcgt cctgcgagac gcggaagggc agcacgccct cgggcgcgag cagcgggtcg
    10261 gccgatttgg gctgcgcgac tattttgccg ccgcagaagt cacaatcgcc cgccacctgc
    10321 ggcggcgtga aggtgaccgt ggccccgcac gtctcgcagc ggacttcgag cgccgctggc
    10381 gccatcgtcg tcaactgccc ctcgcgcgcg cgaaggtact cttcgtaaga gcgctcctcg
    10441 acgctgccgg ccgccggcac gatctgctcg ctccggccgc agtacgggca gacgaggctg
    10501 ccgcccttcg gctcgaactc gaggtctgcg ccgcagccgg ggcagcggta gcggtgcgcc
    10561 ttctctcgcg cagtcgtcat ctcttcagac atcaactaat caccgttcgc tcaaggccga
    10621 gagctgcggg ttcgacttcc ggcgccagac gaagccgtcc aacacatagt gcgtcacctg
    10681 cgggagcgcg agcagcggga cgagcaagac cttcaacccc tgcacgtccc acgcggcgcc
    10741 gaacagccac gcgcgctcgt gccagacgcc cctgtcccac agaagctctt cggcgtaggc
    10801 catcagccac agcgtcgcga tgaagacgag gggccagcgc gcgaggcccc ggtaggcggc
    10861 gccggcccgc ggcgcgcggc ctctggcgta ccaccagacg agcaccatgt aggggacgcc
    10921 gtggatgact acgttcgtca cggtgaaggc gtagtcggaa ttgtaggcga ctatccccgc
    10981 gtaccagcaa agcgcggtcg tcagcacgac gaggtctttg ccggggttgc cggcgccgcg
    11041 cacgagccag gcgtgcgccg agcggacggc gtatgcgccg agcgccagga cgtaagcggg
    11101 ccacgcggca cgctcgaccc aggcggggac ttgcgcgaag tcgcccggca ggaaccacca
    11161 gaaccggcgc ggcaggttcg cgtgccagta gatgagagga tagagggtcg ccatgtagat
    11221 ggcggccgaa tcaacaaggc gcccgagtcg gcccgcctcg cccgcgcgcg cgcggtagag
    11281 cgccacccag ccgtactgct ggcggacgaa gtggaagacg gcgaggtagg cgagcgagcg
    11341 ccagaatagc gcctcggact ccgagaagag cgcgacgccg agcgcgagcg cgatggccgg
    11401 cgccagcagg tagagccacg cgcggcgc
//
LOCUS       DASPKR010000346        13324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_435302, whole genome shotgun sequence.
ACCESSION   DASPKR010000346 DASPKR010000000
VERSION     DASPKR010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 13324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13324)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13324
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_435302"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1294)
                     /locus_tag="VD968_09370"
     CDS             complement(<1..1294)
                     /locus_tag="VD968_09370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14636.1"
                     /translation="MSDKSRNVKLTRVIIFAFGFLASYLPLIAGYDYWFMGLSVAAFF
                     LFAVLAIVVAWSFIERRPRGRLRALAYATDWSELMTYVAVIMGFGAGMLAYVYRFTLD
                     AFWVRVGGGLGSLWGYIKSHMDSDRELFLASMIFLGVILGFYVVRNWLKDEEDFLKSL
                     RAVIGGAFLTSLLGLGANGLKEGQDINMLSALAHYGLGFTLSAVVNLLIYAWLTSIYS
                     KTLSPRSRALIFFLYGTDKAKALDDYFLHKFEENKDSAKLMLVEALKKFRDRVLEGYA
                     ERMERRRAALAGAGLKFYRLISVERLPSEGGGPESPPHDGGDAHIVRVEEIDEAGGGV
                     KAEMFRMGVTAVTASNLEYVVAPGDYKEPFPLRGSVAGLAMRARQSIVMNRDRNKKFR
                     TKDDKGGITPPMLDRGFEEIDYLSYVSVPVVSNVGYREE"
     gene            complement(1437..2081)
                     /locus_tag="VD968_09375"
     CDS             complement(1437..2081)
                     /locus_tag="VD968_09375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14637.1"
                     /translation="MSGKVKPFYGTGEFAVAEFAPRKAAEVIEMLLTAFDCTVPDDAG
                     RYCSSDVTTGRRLYFHVFEEHGVRSSDEMKAKLGRERYREVKAALIRHNIERGVRFTE
                     SLRRRGLANLINPGPLVAPGFDQEHYHYLWECVIIKKVCETHFNEGWEYSNGCTLEYA
                     VSRRKGIPCYDHRGGPLPPAEAVEKIKRALDELKERGIAVPALERNLKLITDQG"
     gene            complement(2078..3487)
                     /locus_tag="VD968_09380"
     CDS             complement(2078..3487)
                     /locus_tag="VD968_09380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14638.1"
                     /translation="MTEPRLHFKDAVLDRLSTRANVAQFVSFGPDLRQRHSRVRGHEP
                     NARFKSPESAVAALIEKSGEGRVNVRSFLPDDPKSKPFKYDLRSVGEAVAFARRFAAE
                     GLFVIVNETIDVHDGGVSGVALGDHIELAPGDTPRCVEKPGTASFTRDTGLRLLRKVY
                     GFRPALRYGPATRVEFSLHPLRRGFLHDHTIIWELERVGAAHGSGDTRWPNRFSRFLG
                     DKAFGLLVADTLGLPVPATTVIPRGLAPFAFGRPTGTSETWIRTCPVEQEPGRFTTER
                     GWLDPFRLLSAEDPTGERIASVLAQEGVDAAYSGALLVQADGSALVEGRRGYGDRFMV
                     GETRKEKRLPAEVLDPVLALYDRARALLGPVRMEWVLDRGGAAWVVQLHRGATATQGS
                     VIHAGPARRFRRFDVGRGIEELRELIRRVKGTGDGIVLVGDVAVTSHLGDLLRKAQIP
                     SRIESAGRRGGKRVGRRAA"
     gene            3624..6839
                     /locus_tag="VD968_09385"
     CDS             3624..6839
                     /locus_tag="VD968_09385"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE14639.1"
                     /translation="MGERDDREGFDAKVTGPEGAEEQPLERALRERLRSVKSQSERKT
                     IAGLAREIGKLPAETARAALEVSAGLASVSLRAGVDFLRVVPEAALVLDAEELRAWGE
                     FGRRLTMADVETGAAFFGAGVEGLRAVPRDARALLFQVCARQLTLSTSIALETYRRAP
                     DVAREVGDAELLRQVFEVALEIARRSAKHSADFLAATPQVVPALRGSGGVGLGREALA
                     LAHSFATRAGGIAADMWAAVPAAVEGLDDEAARLLFRQAEGFLDRGGAAALHVLASGG
                     EVLRLFPEAFAEWAALLRTVAAHNNASLVSLARTSPATFRALSPPKAGRARAVETARR
                     VVAAAHAVARVDAEAAISCFRSAPQALRATTVEQFERWARAGLEAEGETPRGRRSYYA
                     LETRRSNERLQTGGRGLGLEEVAQTLKLYVEALTGRAVEVAPLAAVPDEQRIGDGRTI
                     HLPSSVSEFGEDELDFRLYKVLAAHAAGQIEFGTHERGTPGLRAAYSALAEAYAPENR
                     DALDAFALDGYINRIEEGERALAPEEEARLAAAGARASLPEGGDYREVLALFPQRGLA
                     ARIFGTLENGRIDRRLRHAYRGLKRDLDLVRARLRESRPRVVTLPAALVPFELLFQIT
                     LCGGALEDARAFYGQAVSELETIVVDYLTDARASVADTLMATSRVYTLFQSVVPEMTE
                     RDTRDEGAGEDRQDGAQSNLGDEAEEREEPRDETDGEARRRDARELFNAWAAAEAQGR
                     DGEESLKGLERWMTGETPEQELAADETAFEYDEWDRDLSDTRVGWCRVVEKRVRSGDR
                     SFVELTRSRYRGVISSVRHQFQLMKPESLKRVREELDGDDYDLNALIDYVVDRRADGQ
                     QSERIYTKRLRRERDVAVSFLLDQSSSTARTIGRHPLQPYTHPGRRIIEVEKEGLVLM
                     SEALEAVGDPYSIYGFTSEGRRNVKFYVIKDFGERYTEETERRIGGINYQNNTRLGAA
                     IRHAAAKLRSQEARTRLLIVLSDGRPYDHDYGDARYAREDTREALRDARLQGITPFCV
                     TIDRDSEAELKDLYGEVGYTIIDDVLSLPERMPAIYRRLTT"
     gene            complement(6895..7929)
                     /locus_tag="VD968_09390"
     CDS             complement(6895..7929)
                     /locus_tag="VD968_09390"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HYE14640.1"
                     /translation="MAGRWTKRLLKVGGYGLGVLVLLLVVGVTMTVGWRPFIGPRARP
                     LTARRFEPTAARLERGRYLVENVSGCFLCHSSVDWRKDPAKSYAAAKKGAGSTLEQDG
                     MPWLTAPNITPDEETGAGRWTDDMLARAIREGVGHDGRALFPMMPYSTFSNYSDEDLA
                     SVVVYLRSIEPVRNALPKSEIPFPLSKLINDVPRPIEAPVPEPDRSSPVKYGEYLVKV
                     ADCAGCHTPRGEKGEPIAGLEFGGGNVFDMGEGRTVATANLTPDPTGIPYYDEALFVS
                     TIRTGHVKARKLSPMMPWWYFKGMKDEDLKAIFSYLSTLRPVDHHVDNAEPPTYCKRC
                     KHKHGLGDRN"
     gene            complement(8055..8474)
                     /locus_tag="VD968_09395"
     CDS             complement(8055..8474)
                     /locus_tag="VD968_09395"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: protein motif:HMM:NF013607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030612 - arsenate reductase (thioredoxin)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HYE14641.1"
                     /translation="MNDRKRVLILCTGNSARSQMAEGLLRHDGGGRFEVESAGVEPSS
                     VRPQAVEAMREVGVDISGHRSKSVEEFAGREFDYVITVCDNANERCPVFPGNTRRLHW
                     SFEDPAAAEGDEAERLAVFRRVRDEIRARLRDFIASA"
     gene            8639..8724
                     /locus_tag="VD968_09400"
     tRNA            8639..8724
                     /locus_tag="VD968_09400"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8672..8674,aa:Ser,seq:tga)
     gene            8838..9848
                     /locus_tag="VD968_09405"
     CDS             8838..9848
                     /locus_tag="VD968_09405"
                     /inference="COORDINATES: protein motif:HMM:NF044972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HYE14642.1"
                     /translation="MLTTGSLLATCALAIQDENSLQRLWRWTEPLRTYLNFPWKLGNF
                     VFSISTIVIGLVILLVAAAVSRYLRSFIERRMARHKHLDPGVQFTILRLVHYAIVAIG
                     IVTALRVAVGADFTSLAVVFTALSVGIGFGLQFIAGDIASGFIILFERPVRVGDFVTI
                     PGPDGKLTEGRVHSINLRTTIVMTNDNVASVVPNSKLVSQNFLNWSYRERRSRISIHV
                     GVSYDSDVEKVTRTLLRAAEGVQYLLAEPKPSVQFLEFGDSSLNFRLLVWTDRPRRYP
                     QIKSAINYNIRRLFLEEGIEIPFPQRDLHLRDGSLRLGRGARELFAGDDEEEREPSLQ
                     QR"
     gene            complement(9917..10147)
                     /locus_tag="VD968_09410"
     CDS             complement(9917..10147)
                     /locus_tag="VD968_09410"
                     /inference="COORDINATES: protein motif:HMM:NF024763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HYE14643.1"
                     /translation="MADPNDRVPENAPGDYYVDTQCIDCDVCRSTAPDNFDRAGSNGY
                     SFVLRQPQTQEERELCEEALLACPVEAIGNDG"
     gene            complement(10147..11265)
                     /gene="nadA"
                     /locus_tag="VD968_09415"
     CDS             complement(10147..11265)
                     /gene="nadA"
                     /locus_tag="VD968_09415"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: protein motif:HMM:NF006883.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HYE14644.1"
                     /translation="MVTTLEVVGERAPALEDYFGLSEGELDGRIEAARRRLGPRLVIL
                     GHHYQRDDVIRHADYTGDSFKLAKLAAERPEAEFVVFCGVHFMAESADILKPGDQKVI
                     LPDLGAGCSMADMATAEQVEDAWEQLEAIGVVGDFRVVPVTYMNSSAAIKAFCGERGG
                     VVCTSSNAVPLFDKYLKEADKLFFFPDQHLGRNTGVKFGIPLEQMALWDPSKELGGNT
                     VEQLRSARLILWKGHCSVHGRFRPWHVDEVRREVPGIKVIVHPECVREVVEKADMNGS
                     TEFIIKAIEEAPAGSAWAVGTEVNLVNRLAAAHPDKHVRLLAPDLCMCATMYRIAPQN
                     LAWALESLVAGRVVNRITVPEETAHWARVALDRMLAIK"
     gene            11645..12625
                     /locus_tag="VD968_09420"
     CDS             11645..12625
                     /locus_tag="VD968_09420"
                     /inference="COORDINATES: protein motif:HMM:NF016906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HYE14645.1"
                     /translation="MKRSRNKRAGWAVRVAIFSFVAVALCAGTIQWGAVRVSANHPVL
                     VEGNCDSPVPGTNVITEHGTCGDYDGDGRIGTAEDTDGADRIFGTINAALGPGTGAAA
                     GTGANHNGTITIVKSGRFAETIYIGQNLSGPGGAGVTTPINVTLEAAPGVSADINAVF
                     QGDPAGGNASRQSQEGITVLYTTTGPNAVVTLRNLTVRNFATGIAVGGNSRVVIDNCR
                     LENNFNHGIRVSGNARVVVNDTRVTATGFRFGPGSTGSPNPGNGISVEDKSQARILHS
                     VFAQNLAGGISNNTGVTSNVQVFKVSSHFNAVDISGAGVTVAPDHNLSQN"
     gene            complement(12716..>13324)
                     /locus_tag="VD968_09425"
     CDS             complement(12716..>13324)
                     /locus_tag="VD968_09425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012321776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HYE14646.1"
                     /translation="HPNKFAALSAHDELVFASGALKTLAASLMKIANDIRWLASGPRA
                     GLGELIIPENEPGSSIMPGKVNPTQSEAMTMVAVQVMGNDAAIGFAGSQGNFELNVFK
                     PVMIHNLLHSVRLLKDACRSFVEHCAVGIELNREKIEEHLRNSLMLVTALNPHIGYDN
                     AAKIAKNAHKKGISLRESAVELGLLTAEQFDEYVRPEEMTHP"
BASE COUNT         2126 a         4551 c         4476 g         2171 t
ORIGIN      
        1 tctcctcgcg gtagccgacg ttgctcacca cgggcacgga gacgtaggag aggtagtcta
       61 tctcctcgaa gccgcggtct agcatcggag gggtgatccc ccccttgtcg tcctttgtcc
      121 ggaacttctt gttcctgtcc cggttcatga cgattgactg gcgcgcgcgc atggcgaggc
      181 cggcgacgct gccgcgcagc gggaacggct ccttgtaatc gccgggcgcc acgacgtact
      241 caaggttgct cgccgtaacg gccgtgacgc ccatgcggaa catctcggcc ttcacgccgc
      301 cgcccgcctc gtctatctct tcgaccctta cgatgtgcgc gtcgccgccg tcgtgcgggg
      361 gcgactccgg gccgccgccc tcggaaggca gcctctcgac tgagatgagg cggtagaact
      421 tcagccctgc gcccgcgagc gccgcgcgcc tgcgctccat cctctccgcg tacccttcga
      481 gcaccctgtc gcggaacttc ttcagcgcct cgacgagcat tagcttggcg ctgtccttgt
      541 tctcctcgaa cttgtggagg aagtagtcgt cgagcgcctt cgccttgtcc gtgccgtaga
      601 ggaagaatat gagggcgcgg ctgcgcggcg agagcgtctt gctgtagatg gaggtcagcc
      661 aggcgtatat cagcaggttg acgacggccg agagcgtgaa gccgaggccg tagtgggcca
      721 gcgcgctcag catgtttatg tcctgcccct cctttagccc gttcgcgccc aggccgagca
      781 gcgaggttag aaaggcgccg ccgatgacgg cccgcaagct cttgaggaaa tcttcctcgt
      841 ccttgagcca gttccgaacc acgtagaagc cgaggatgac tccgaggaag atcatgcttg
      901 cgaggaacag ctcacggtcg gagtccatgt ggctcttgat gtagccccag agcgagccga
      961 ggccgccgcc cacgcgcacc cagaaggcgt cgagcgtgaa gcgatagacg taggcgagca
     1021 tccctgcgcc gaagcccatt atgaccgcga cgtaggtcat aagctccgac cagtccgtgg
     1081 cgtaggccag cgccctcagc cgcccgcgcg ggcgccgctc gatgaaagac cacgccacga
     1141 ctatcgccag cacggcgaac aggaagaagg ccgcgaccga gagccccatg aaccagtagt
     1201 cgtagccggc tatcaggggc aggtacgagg ccaggaagcc gaaggcgaag atgatcaccc
     1261 gcgtgagctt tacgttgcgg ctcttgtctg acatggggag ttcctcctga ggtcgaagtc
     1321 acagtcggcc tttataggtt tatggcggcg cgcgcccctt acatttcagg cgcgggcgcg
     1381 ggaaggcgag ggtgaatccg ttcgagagcg cgggccgagg gtcgcggccg cacgttttac
     1441 ccctggtcgg ttatcagctt gaggttccgc tctagcgccg ggacggcgat gcctcgctcc
     1501 ttcagctcgt cgagggcgcg cttgattttc tcgactgcct cggcgggcgg caggggcccg
     1561 ccccggtggt cgtagcaggg tattcccttg cggcggctga cggcgtactc gagcgtgcag
     1621 ccgttgctgt actcccagcc ctcattgaag tgcgtctcgc agaccttctt gatgatgacg
     1681 cactcccaga ggtaatggta gtgctcctgg tcgaagccgg gcgcgacgag cgggccgggg
     1741 tttatgaggt tcgcgagccc gcgccgcctg agcgactccg tgaagcggac gccgcgctcg
     1801 atgttgtggc gtatgagcgc ggccttgacc tcgcggtagc gctctcggcc gagcttggcc
     1861 ttcatctcgt ccgacgagcg cacgccgtgc tcttcgaaga cgtggaagta gaggcggcgc
     1921 cccgtggtaa cgtcgctgct gcaataccgg ccggcgtcat ccggcaccgt gcagtcgaag
     1981 gccgtaagta acatctctat cacttcggcg gccttgcgcg gggcgaactc cgctacagcg
     2041 aactcgcccg tgccgtagaa aggcttgacc ttcccgctca tgccgcccgc ctcccgactc
     2101 ttttgccgcc gcgacggccc gccgactcga tgcgcgaagg gatttgcgcc ttgcgcagga
     2161 ggtcgccgag gtggctcgtc accgccacgt cgccgacgag gacaatcccg tcgcccgtcc
     2221 ccttcactcg cctgatcaac tcgcgaagct cctcgatgcc ccgccccacg tcgaagcgcc
     2281 ggaagcggcg cgccgggccg gcgtgtatga cggagccttg cgtggcggtc gcgccgcggt
     2341 gtagctgcac gacccaagcg gcgccgcctc tgtccaagac ccactccatc ctgacggggc
     2401 cgagcagcgc tcgcgcgcgg tcgtagagcg cgagcacggg gtcgagcact tcggccggca
     2461 gcctcttctc cttgcgcgtc tcgcccacca tgaatcggtc gccgtacccg cgccggccct
     2521 cgacgagagc gctgccgtcc gcctgcacga gcagcgcgcc ggagtaggcg gcgtcaacgc
     2581 cctcctgcgc gagcaccgaa gcgatgcgct cgcccgtcgg gtcttcggcc gagagcaggc
     2641 ggaaggggtc gagccagccg cgctcggttg tgaacctgcc cggctcctgc tcgacggggc
     2701 aggtgcgtat ccaggtctcg ctcgtccccg tcgggcggcc gaaggcgaag ggcgcgaggc
     2761 cgcgcggtat gacggtcgtc gccgggacgg gcaggcccaa ggtgtctgcg acgagcaggc
     2821 cgaaggcctt gtcgccgagg aagcggctga agcggttcgg ccagcgcgtg tcgccggagc
     2881 cgtgcgcggc gccgacgcgc tccagctccc agatgatcgt gtggtcgtgg aggaagcctc
     2941 ggcggagcgg gtgcaggctg aactcgacgc gcgttgcggg gccgtacctg agcgcggggc
     3001 ggaagccgta aaccttcctg agcagacgga ggccggtgtc gcgcgtgaat gacgccgtcc
     3061 ccggcttctc gacgcagcgc ggcgtgtcgc cgggcgcgag ctctatgtgg tcaccgagcg
     3121 cgacgccgga gacgccgccg tcgtgcacgt caatcgtctc gttgacgatg acgaagagcc
     3181 cctcggccgc gaaccggcgg gcgaacgcga ccgcctcgcc gacggagcgc aggtcgtact
     3241 tgaagggctt ggacttcggg tcgtcgggca ggaaggagcg gacgttgact cggccttcgc
     3301 ccgacttctc tatgagcgcg gcgacggccg actcgggcga cttgaagcgc gcgttcggct
     3361 cgtggccgcg cacgcgcgag tggcgctgcc gcaggtcggg gccgaagctc acgaactgag
     3421 cgacgttcgc cctcgtgctg aggcggtcga ggactgcgtc tttgaagtgt aggcggggct
     3481 cggtcatctc ttcggcgctg cgaaatatag cagagcgccc ggcggcggca aagcgtttct
     3541 cccgtcggcg cgcgcctttt caaacgcggg ccgcgcgtgc tgtagaatga aggcgtttca
     3601 aattctttag gtggcgtgag gggatgggcg agcgggacga ccgggaaggg ttcgacgcga
     3661 aggtgacggg gcctgaaggg gcggaggagc agccgctcga gcgcgcgctg cgcgagaggc
     3721 tgcgctcggt caagagccag agcgagcgca agacaatcgc cggcctcgcg cgcgagatag
     3781 ggaagctgcc ggccgagacc gcgcgcgccg ccctcgaagt gagcgccggg ctcgcgtccg
     3841 tgagccttcg cgcgggcgtt gattttttga gggtcgtccc cgaggccgcg ctcgtgctcg
     3901 acgccgaaga gctgcgcgcg tggggcgagt tcggccgccg cctgacgatg gccgacgtcg
     3961 agacgggcgc ggccttcttc ggcgcgggcg tcgaggggct gcgcgccgtg ccgcgcgacg
     4021 cccgcgcgct cctcttccag gtctgcgcgc ggcagctcac gctctccacc tccatcgcgc
     4081 tcgaaactta ccgccgcgct cccgacgtgg cgcgcgaggt aggcgacgcg gaactcctga
     4141 ggcaggtctt cgaggtcgcg ctggagatcg cgcgccgctc cgcaaagcac agcgccgact
     4201 tcctcgcggc gaccccgcag gtcgtccccg cgctacgcgg ttcgggcggc gtcggcctcg
     4261 ggcgcgaggc gctcgcgctc gcgcactctt tcgccacgcg cgcgggcggc atagccgccg
     4321 acatgtgggc cgctgtcccc gcggcagtcg aaggcctcga cgacgaagcg gcccgcctcc
     4381 tgttccgcca ggccgaaggc ttcctcgacc gcgggggcgc ggcggcgctg cacgtgctcg
     4441 cgtcgggcgg cgaagtgctg aggctcttcc cggaggcgtt cgctgagtgg gccgcgctgc
     4501 tgcgaacggt ggccgcgcac aacaacgcga gcctcgtctc gctcgcgcgc acgagcccgg
     4561 ccaccttccg cgcgctctct ccgccgaagg cggggcgcgc ccgcgccgtc gagacggccc
     4621 ggcgcgtcgt cgccgccgcg cacgcggtcg cccgggttga cgccgaggcc gccatatcct
     4681 gcttccgctc cgcgccgcag gccctgcgcg cgacgaccgt cgagcagttc gagcgctggg
     4741 cgcgcgcggg gctggaggcc gagggcgaga cgccgcgcgg gcggcgcagc tactacgcgc
     4801 tggagacgcg ccgcagcaac gagcgcctcc agacgggggg gcggggcctc gggctcgaag
     4861 aggtcgcgca gactctcaag ctctacgtcg aggccctgac gggccgcgcc gtagaggtcg
     4921 cgccgctagc cgcagtcccc gacgagcagc gcataggcga cggccgaacc atccatctgc
     4981 cttccagcgt ctcggagttc ggcgaagacg aactcgactt ccgcctctac aaagtcctcg
     5041 ccgcgcacgc cgccggccag atagagttcg gcacgcacga gcgcgggacg ccgggattgc
     5101 gggccgccta ctcggcgctc gccgaagctt acgcgccgga gaacagggac gcgctcgacg
     5161 ccttcgcgct cgacggctac atcaaccgca tcgaggaggg tgagcgggcg cttgcgcccg
     5221 aggaggaggc gcggctcgcc gccgccggcg cgcgcgcctc gctccccgaa ggcggcgact
     5281 accgcgaggt gctcgctctc ttcccgcagc gcgggctagc ggcgcgcata ttcggcacac
     5341 tcgagaacgg gcgcatagac cgccgcctgc gccacgccta ccgcggcctc aagcgcgacc
     5401 tggacttggt tcgcgcgcgc ctgcgcgaga gccgcccgcg cgtcgtcacg ctcccggccg
     5461 cgctcgtccc cttcgagctg ctgttccaga taactctctg cggaggcgcg ctcgaagacg
     5521 cgcgggcctt ctacggccag gccgtctccg agcttgagac catcgtcgtt gactacctga
     5581 cggacgcgcg cgcttccgtc gcagacaccc tgatggcgac gagccgcgtc tatacgctct
     5641 tccagtcggt agtgcccgag atgaccgaga gggatacgcg cgacgaaggc gcgggcgaag
     5701 accgccagga cggcgcgcag tccaacctcg gcgacgaggc tgaggagcgc gaggagcccc
     5761 gagacgagac tgacggcgag gcgcgccgcc gcgacgcccg cgagcttttc aacgcgtggg
     5821 ccgcggccga agcacagggc cgcgacggcg aagagtcgct caaaggcctg gagcgctgga
     5881 tgacgggcga gacgcccgag caggagcttg cggccgacga gacggccttc gagtacgacg
     5941 agtgggacag ggacctgtcc gacacgcgcg tcggctggtg ccgcgtcgta gagaagcgcg
     6001 tgcggagcgg cgaccgctcc ttcgtcgagc tcacgcgctc gcgctaccgc ggcgtaatct
     6061 cgtcagtccg ccaccagttc caactgatga agcccgagag cctcaagcgc gtgcgcgaag
     6121 agctcgacgg cgacgactac gacttaaacg ccctcattga ctacgtcgtt gaccgccgcg
     6181 cagacggcca gcagtccgag cgcatctaca cgaagcgcct ccgccgcgag cgcgacgtcg
     6241 ccgtctcgtt cctgctcgac cagtcctctt cgaccgcgcg caccatcggc cgccacccct
     6301 tgcagcccta cacgcacccc ggccgccgca tcatcgaggt cgagaaggag gggctcgtcc
     6361 tgatgagcga ggcgctcgaa gccgtcggcg acccctactc gatatacggc ttcacctccg
     6421 agggccggcg caacgtgaag ttttacgtta tcaaggattt cggcgagcgc tacaccgaag
     6481 agaccgagcg ccgcatcggc ggcatcaact accagaacaa cacccggctc ggcgccgcca
     6541 tacgccacgc cgccgccaag ctccgcagtc aggaggcgcg cacccgcctg ctcatcgtcc
     6601 tctccgacgg ccgcccctac gaccacgact acggcgacgc gcgctacgca cgcgaggaca
     6661 cgcgcgaggc ccttcgcgac gcgcgactgc agggcatcac gcccttctgc gtcaccatag
     6721 accgcgactc cgaggccgag cttaaagacc tctacggcga agtcggctac accatcattg
     6781 acgacgttct ctcgctaccc gagcgcatgc ccgccatcta ccgccggctg acgacataag
     6841 gggcggggga tgcgactccc ctcgcccctc cgctttcctg cctcgacccc ggctttaatt
     6901 ccggtcgccg aggccgtgct tgtgcttgca gcgcttgcag taggtgggcg gctcggcgtt
     6961 gtccacgtgg tgatcgaccg ggcgcagggt gctcaggtag gagaagatgg ccttgaggtc
     7021 ttcgtccttc atgcccttga agtaccacca gggcatcatg gggctgagct tacgcgcctt
     7081 gacgtggccc gtccttatcg tcgagacgaa gagcgcctcg tcgtagtagg ggatgccggt
     7141 cgggtcgggc gtgaggttgg ccgtggcgac cgtgcgcccc tcgcccatgt cgaagacgtt
     7201 accgccgccg aactccaacc ccgctatcgg ctcgcccttc tcgccgcgcg gcgtgtggca
     7261 gcccgcgcag tcggcgactt tgacgaggta ctcgccgtac ttcacagggc tcgaacggtc
     7321 gggctcgggg acgggcgcct ctatggggcg cggcacatcg ttgatgagct tagagagggg
     7381 gaagggtatc tcggacttgg gcagcgcgtt gcgcacgggc tcaatcgagc gcaggtaaac
     7441 gacgacggat gcgaggtctt cgtcggagta gttagagaag gtgctgtagg gcatcatggg
     7501 gaagagcgcg cggccgtcgt ggccgacgcc ctcgcgtatg gcgcgcgcga gcatgtcgtc
     7561 agtccagcgg cccgcgcccg tctcctcgtc gggcgtgatg ttgggcgcgg tgagccacgg
     7621 catgccgtcc tgctcgagag tcgagccggc gcccttcttc gccgcggcgt aggatttggc
     7681 cgggtctttc cgccagtcca cagaagagtg gcagaggaag cagcccgaga cgttctcgac
     7741 gaggtagcgg ccgcgctcga ggcgcgccgc ggtgggctcg aacctgcggg ccgtgagcgg
     7801 ccgcgccctc gggcctatga aggggcgcca gccgaccgtc atggtcacgc ccaccacgag
     7861 caaaagcaca agaaccccga gcccgtagcc cccgaccttc aacaagcgct tcgtccacct
     7921 gccggccatc gccgttcacc tccgccgccc gaatctccgc cgccctcctt gccctgccct
     7981 gtaacgcgga attgcgcggc gaaggtaatc acgggggggc gctcaggcgc ccggctgcgg
     8041 gttcgggagg gttttcaggc ggaggctata aagtcgcgca agcgggcgcg tatctcgtcg
     8101 cgcacgcggc ggaagacggc caggcgctcg gcctcgtcgc cttcggcggc ggccgggtct
     8161 tcgaagctcc agtgcaagcg ccgcgtgttg ccggggaaga cggggcagcg ctcgttagcg
     8221 ttgtcgcata ccgtgatgac gtagtcgaac tctcggcccg cgaactcctc gaccgacttg
     8281 gagcggtggc ccgagatgtc aacgcctacc tcgcgcatgg cctcgaccgc ctgcggccgg
     8341 acggaactcg gctcgacgcc cgcgctctcg acctcgaagc gcccgccgcc gtcgtgccgc
     8401 aggagcccct cggccatttg gctgcgcgcg gaattgcccg tgcagagaat cagaaccctc
     8461 ttcctgtcat tcatcagcgc ccctcccttt cgagtgcggc atgcgggaca ggggcgtggc
     8521 cgccgccccc ggcggcacga cccgagttgt aaaccacgcg aggttaattt gaggtaacgc
     8581 gcgccgccgc ttttgccttc gcttcggccg gcgggttata tttgcctctg ttcccgccgg
     8641 agggttggca gaacggctat tgcaccggtc ttgaaaaccg gcgtccgaaa ggacttgggg
     8701 gttcgagtcc ctcaccctcc gccaaaagaa aagttcggac gcgtcggagc cgcccgcccc
     8761 cttccgagag gcgctggcgg cttcgattat ttcgggcggc ggcgcgcgcc gctaagtgct
     8821 cgaggagggt tccggtgatg ttgacgacgg gctcgctgct ggcgacctgc gcgctggcga
     8881 ttcaggacga gaactctttg cagaggctct ggcgctggac tgagcctctg cgcacctacc
     8941 tcaacttccc ctggaagctc ggcaacttcg tcttctccat aagcacgata gttatcgggc
     9001 tcgtcatact gctcgtcgct gctgccgtct cgcgctacct gcgctccttc atcgaacgca
     9061 ggatggcgcg ccacaagcac ctcgaccccg gcgtgcagtt caccatactg cggctcgtcc
     9121 actacgccat cgtcgccata ggcatcgtga cggcgctgcg cgtcgccgtc ggcgccgact
     9181 tcacctctct ggccgtcgtc ttcacggcgc tctcggtcgg cataggcttc ggccttcagt
     9241 tcatcgcggg cgacatagca tcgggcttca taatcctctt cgagcggccc gtgcgcgtcg
     9301 gcgatttcgt caccatcccc ggccccgacg gcaagctcac cgaggggcgc gtccacagca
     9361 tcaacctgcg cacgacgata gtgatgacga acgacaacgt cgcgtcggtc gtgccgaact
     9421 cgaagctcgt gagccagaac ttcctcaact ggtcttaccg cgagcgccgc tcgcgcatct
     9481 ccatacacgt cggcgtttcc tacgactccg acgtggagaa ggtgacccgg acccttttgc
     9541 gcgccgccga gggcgtgcag tacctcctgg cggagcccaa gccgagcgtg cagttccttg
     9601 agttcggcga ctcttccctg aacttccggc tgctcgtctg gaccgaccgg ccgcgccgct
     9661 acccgcagat aaagagcgcg ataaactaca acatacgccg cctcttcctc gaagagggca
     9721 tcgagatacc cttcccgcag cgtgacctgc acctgcgcga cggctcgctc cgactcggcc
     9781 gcggcgcgcg tgagctcttc gcgggcgacg acgaagagga gcgcgagccg agccttcaac
     9841 agagatgagg cttccgtctt cccgctactt ttttatctga atcttctcgc cgcaggccgg
     9901 cgtggtgcgc ccggcctcag ccgtcattgc cgatggcctc gacggggcag gccaggagcg
     9961 cctcttcaca tagctcgcgc tcttcctgcg tctgcggctg ccggagcacg aacgagtagc
    10021 cgttcgagcc cgcccggtcg aagttgtcgg gggccgtgct gcggcacacg tcgcagtcta
    10081 tgcactgcgt gtcaacgtag tagtcgccgg gcgcgttctc cgggacgcgg tcgttagggt
    10141 cagccattac ttgatagcga gcatgcggtc gagggcgacg cgcgcccagt gggcagtctc
    10201 ctcggggact gttatccggt tgacgacgcg gcccgccacg agcgactcga gcgcccacgc
    10261 gaggttctgc ggcgcgatgc ggtacatcgt cgcgcacatg cagaggtcgg gcgcgagcag
    10321 gcggacgtgc ttgtcggggt gcgcggccgc gaggcggttg accaggttga cctctgtgcc
    10381 gacggcccac gcggagccgg ccggggcctc ctcaatcgcc ttgatgatga actcggtcga
    10441 gccgttcatg tccgccttct ctacgacctc gcgcacgcac tccgggtgga cgatgacctt
    10501 gatgcccgga acctccctgc gcacctcgtc cacgtgccag gggcggaagc ggccgtgcac
    10561 ggagcagtgg cccttccaga gaatcaagcg cgccgagcgg agttgctcta cggtgttgcc
    10621 gcccagctcc ttcgacgggt cccagagcgc catctgttca agcgggatgc cgaacttgac
    10681 gcctgtgttc cggccgaggt gctggtcggg gaagaagaag agcttatcgg cctccttcag
    10741 gtacttgtcg aacagaggca cggcgttcga cgaggtgcag accacgccgc cgcgctcgcc
    10801 gcagaacgcc ttgatggccg ccgacgagtt catgtaggtg acggggacta cacggaagtc
    10861 gccgacgacg cctatcgcct caagctgctc ccaggcgtcc tccacctgct cggccgtagc
    10921 catgtcggcc atcgagcagc ccgcgccgag gtcgggcagt atgaccttct ggtcgcccgg
    10981 cttgagaatg tctgcggact cggccatgaa gtggacgccg cagaagacca cgaactcggc
    11041 ctcgggccgc tcggccgcga gcttggcgag cttgaaggag tcgcccgtgt aatcggcgtg
    11101 gcgaatcaca tcgtcgcgct ggtagtggtg gccgagtatg acgaggcgcg ggcccaggcg
    11161 gcggcgcgcc gcctcgatgc gcccgtcaag ctcgccttcg gacagcccga agtaatcttc
    11221 gagcgccggc gccctctccc caacgacttc caaagttgtg accatcttct accctccgcg
    11281 agccccacgg cgcgggcaac tgcgcccgcg cgaaacgaaa aatatatgcc cccgcgggca
    11341 cgagcgcaag cgggcgggcc gcgctcacta attagatgcg cgccgggggg ggcggttgtt
    11401 ccccgccccg cgcctcgggc ccgccccggc cgaccggccg ctcccgcgaa taacggggaa
    11461 acaacgccct gctcaacccg aacgagcggc ccgctcataa gttctcgcgc acaggcttac
    11521 aaatcacgta tactcggcgc caaggcttca ttcaaggcaa tagcgggctt gtgtggcgcg
    11581 gcgcggcttc ggaaggcgtg ccgcgtctga agtttcttaa cccaaatcac tcaggaggag
    11641 agagatgaag aggtcacgta acaagcgggc gggctgggcc gtcagggtgg caatattctc
    11701 gttcgtcgcc gtcgccttgt gcgccggcac gattcagtgg ggcgccgtaa gagtctcggc
    11761 taaccacccc gtgctggtcg agggcaactg cgacagcccc gtgccgggca cgaacgtcat
    11821 cacagagcat ggcacgtgcg gcgactacga cggcgacggg cgcatcggca ccgccgagga
    11881 cacggacggc gccgaccgca tcttcggcac catcaacgcc gcgctcgggc cgggtaccgg
    11941 ggccgccgcc ggcacgggcg ccaaccacaa cggcacgata actatcgtca agtcggggcg
    12001 cttcgccgag accatctaca tcggccagaa cctctcgggg ccgggcgggg cgggcgtcac
    12061 caccccgatc aacgtgaccc tcgaagccgc gcccggcgtc agcgccgata taaacgccgt
    12121 attccaggga gacccggccg gcggcaacgc ttcccgccag tctcaggagg gcatcacggt
    12181 gctctacacg acgacggggc cgaacgctgt ggtgacgctc cgcaacctca cggtgcgcaa
    12241 cttcgccacg ggcatcgccg tcggcggcaa ctcgcgcgtc gtgatagaca actgccggct
    12301 cgagaacaac ttcaaccacg gcatacgcgt gagcggcaac gcccgcgtcg tcgtcaacga
    12361 cacgagggtg acggccacgg gcttccgctt cggcccgggc tcgacgggct cgcccaaccc
    12421 cggcaacggc atctcggtcg aggacaagtc gcaggcgagg attctgcact cggtctttgc
    12481 gcagaacctc gcgggcggca tctctaacaa cacgggcgtc acctcgaacg tgcaggtctt
    12541 caaggtcagc tcgcacttca acgccgtgga cataagcggc gcgggcgtga ccgtggctcc
    12601 agaccacaac ctctcacaga actaacgcgc ccgccgacga gacgggatag cgaaggggcg
    12661 gccggagtta gccagactcc ggccgcccct cttcaattcc ctttcggaat tcccctcagg
    12721 ggtgcgtcat ctcttccggc ctgacgtact cgtcgaactg ctcggcggtg agcaggccca
    12781 attcgacggc cgactcgcgc agcgagatgc ccttcttgtg cgcgttcttg gctattttgg
    12841 cggcgttgtc gtagccgatg tgcgggttca gggccgtgac gagcatgagg gagttgcgca
    12901 ggtgctcttc gatcttctcg cggttgagct cgatgccgac ggcgcagtgc tcgacgaagc
    12961 tgcggcaggc gtccttcagg agccggacgg agtggagcag gttgtgaatc atcaccggct
    13021 tgaagacgtt cagctcgaag ttgccctgcg agccggcgaa gcctatggcg gcgtcattgc
    13081 ccatcacctg cacggcgacc atcgtcatgg cctcgctctg ggtggggttg accttgccgg
    13141 gcatgatgga ggagccgggc tcgttctcgg ggattatcag ctcgcccaag cccgccctcg
    13201 gccccgacgc gagccagcgt atgtcgttgg ctatcttcat cagcgatgcg gccagcgtct
    13261 tgagcgcgcc gctggcgaag accaactcgt cgtgggcgga gagggcggcg aacttattcg
    13321 gatg
//
LOCUS       DASPKR010000347         6582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_565169, whole genome shotgun sequence.
ACCESSION   DASPKR010000347 DASPKR010000000
VERSION     DASPKR010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6582)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6582
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_565169"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..3168)
                     /locus_tag="VD968_09430"
     CDS             complement(70..3168)
                     /locus_tag="VD968_09430"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE14647.1"
                     /translation="MNTLHDDLEILRELNLLRDRAKELRERSLRPLRNIKSIEYSKER
                     GVPNKRRKILIAEKDRNVCRLDDWLRNGNEVEVALVTKIQNHADLSVDDDANNNTDAT
                     PELKRRLLNLSINGFFPDIKDLPSSLFDAQPTVSVLMAARAMQTLVSRSNTVFSEATM
                     YCYYRIVRELYVAGTIDWTVGAARAGSGGRTSAFVTGECVRAIFAFEDSIKRTASFFE
                     SVRRLNTRYCELKAAMESLGDAGKDETHPLRLRANRVMERMWLDCQISTNPRAGQIAH
                     FFNSEEKDFGIGQPNQLLPPDIDSPHTGQKELITLKTVEDYLDSLKVNLPKALRRAQE
                     HLEKAQEAVANFRMGYENPYDYSGGTPALKADYDPDGPEERAFINTFHRTESAHLTAF
                     QMIKDAVTENRDVIRIVGNIGENLDRTLEELITKAENIAQRIHRVANPIRQYIKTVIR
                     REFAVATSPSASAFDAGELVFAATAYGTMTDWKPSELLDRACQLLRDALPENGRLVTR
                     RPLHSSQHGYRLIPIGCEMTRCLAQLFQKTNFEIDPAMVKRMLNIFEDNPIPLSNKKG
                     KEMIGWNFENSPHPNKPSVWVSAIAVLALDRIVRMLNSRINNIILKHFDVYRPDKPHI
                     DRTLNNLIYSDFGFSLHGFYGLKEEVYKKLCSIPISLELMRAHVMRASLPRNYVAARN
                     TSNPVFSVIFYGPPGTGKTTLAEATALSAQAPVVNLSPNDLLVQGQQLIEGRARDVFD
                     ALSMLTQVVIILDEFEPILERRVSDESTSTPAGGRLFTPGEPAGAHASAETTDLTADV
                     SQRALTQIAAHTKSLSQVAAHLEGMSQQVDPQLRFLVAGMLPRLLRLHDLAKKQSVAY
                     CLATNHLVKIDDAAKRTGRFDLTIPVYNPCPLSRAGTLLIMLVRIKPDLKLEGETLRR
                     FVKVLAHTTDEAAGELAGNYFKSKGDEGRFVSRSDYLDYILQKRPDVRLDFTKADKMR
                     DPEPNKDKLENSELNERKWLIKFEKILQAEAKRLQEGGGRPSPDLKKLLSAFEFTWTE
                     KR"
     gene            3819..6410
                     /locus_tag="VD968_09435"
     CDS             3819..6410
                     /locus_tag="VD968_09435"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HYE14648.1"
                     /translation="MTFSGRQIPTGGQYHLTADFNGDGRADIAAAGLDVEILLGLGNG
                     TFQPNVKYPIGTSLSGITKGDFNNDAKLDIAVSITATVEVAVLLGNGDGTFSQANRFP
                     TNATGSPTSVAAADFNLDGRLDLITSDPIYCRTAPCFLTKTATVLLGNGDGTFQTPWQ
                     FDTVTPVHQFEVGDFNRDGMTDVIGAAAFGKVLILLSNGDGTFRRAPDVLVVQNVDNT
                     DVAVSDYNGDGALDFVTIADGESRFGVALGNGDGTFRPVTVITDALHQRGWRLVPADF
                     NRDGRLDVGIGFGHCCIDRGSGAFGLMLGNGDGTFQNILRYIRPENGIISLAAIDPAV
                     ADFNGDGKLDVAAQFHNAVGGSTRGTIILTNTSGVSPRSPALGAFTADPPTLVGGTTG
                     ELNLALASGSVAPTGNITFTLSNNNPSVASFPFPMSSPPFVMVQGMTNLRFKVSTNHV
                     STPQDVSITIRNDNLGSRTLTLKVVPPSTPLALGSLEMRPSGIFGGNDGSGVVTLETG
                     HLAPPGGALVTLTNDNPGLITYMPPSVTIPAGQTTAGFPVHTWTTGTATPVNFTASYG
                     GVTKTGVMTVHPPSQPVPISSVTLSPSSIVGGSAPAARLTVTLASNAPPEGATIMLVS
                     SRPDVVALPRSVRIHISTQSSASLDVVTSPVSAPTEVTVTAYFGDSVRSATLTVTPPP
                     ENTPVLSSLTLSPASVAGGTASRGTVTISAASPSSTTVSLSSSSAPVVTVPTSVTIPA
                     GATSASFTVNTTSVSSSFDATITASLNGLSRSAVLSVTPATDTVAIQRAEYESSKRAL
                     RVEATSTRTNATMKVFVTSTGQVIGTLANNGGGKYSASLNWSVNPQNVTVRSSFGGSA
                     SRSVVLK"
BASE COUNT         1150 a         2097 c         2022 g         1313 t
ORIGIN      
        1 gccggcctca catccggaag cgtgctcgaa caaacctctt gtcaggccgc ttgaggcggt
       61 gcgccctctt catctttttt cggtccaggt gaactcaaag gccgagagaa gttttttcaa
      121 atccggggat ggcctcccgc ctccctcctg caaccttttt gcctccgcct gcaaaatctt
      181 ttcgaatttg atgagccact tacgctcgtt gagctcggaa ttttccaact tatccttgtt
      241 gggttccggg tcgcgcatct tgtcggcctt cgtgaagtcg agcctgacgt ccggcctctt
      301 ttgcaagatg tagtctaaat aatctgaccg ggagacgaat ctgccctcgt cgcctttgct
      361 cttgaaatag ttccccgcca actcgccggc ggcctcgtcg gtcgtgtggg ccaggacttt
      421 gacgaaccgc ctcagggttt cgccttcgag tttcaggtcg ggcttaatcc tgacgagcat
      481 gatcagcaga gtcccggcgc gcgagagcgg gcacgggtta tagacgggga tggtcaggtc
      541 gaacctgccg gttcgtttcg ccgcgtcgtc aatcttgacc agatggttcg tggcgaggca
      601 gtaggccacc gactgctttt tggcgaggtc gtgaagcctg agaaggcgcg gcagcatccc
      661 cgcgaccagg aacctgagtt gcgggtcaac ctgttggctc atcccttcga ggtgcgcggc
      721 cacctgtgac aggctcttgg tgtgcgctgc tatctgagtc agggccctct gcgaaacgtc
      781 cgcggtgagg tcggtcgttt cggccgaggc gtgggcgcct gcgggctcgc cgggggtgaa
      841 caacctgccc ccggccggag ttgaggttga ctcgtcgctg acccgacgct ccaaaatcgg
      901 ctcgaactcg tcgaggatga tgacgacctg ggtgagcatc gagagggcgt cgaaaacgtc
      961 gcgcgcgcgg ccttcgatga gttgctggcc ctgaacgagc aggtcgttgg gcgacaggtt
     1021 gacgacaggc gcctgagcgc tcagcgcggt cgcctcagcc agagtggtct tgcccgtgcc
     1081 gggcgggccg taaaagatca ctgagaagac cgggttcgac gtgttgcggg cggcgacgta
     1141 attcctcgga agcgaggccc gcatgacgtg tgcccgcatc agctcgagcg aaatcgggat
     1201 cgagcaaagt ttcttgtaaa cctcttcctt gagcccgtaa aagccgtgca ggctgaagcc
     1261 gaagtcgctg taaatcaaat tgttcagcgt ccggtcaatg tgcggcttgt cggggcggta
     1321 aacgtcgaag tgcttgagga tgatgttgtt gatgcgtgag ttgagcatcc ggacgatgcg
     1381 gtcgagcgcc agcaccgcta tcgccgacac ccagaccgag ggcttgttcg ggtgcggaga
     1441 gttctcgaag ttccagccga tcatctcctt gccctttttg ttcgagagcg ggatcgggtt
     1501 gtcctcgaag atgttcagca tccgtttgac catcgccggg tcaatctcga aattcgtctt
     1561 ctggaacaac tgcgccaggc agcgcgtcat ttcacagccg atggggataa gccggtagcc
     1621 gtgctgcgac gaatggagcg gccgcctggt cacgagcctg ccgttctccg gcagcgcgtc
     1681 ccgcagcagt tggcacgcgc ggtcgagcag ctcgctgggc ttccagtccg tcatcgtccc
     1741 gtaagcggtc gccgcgaaga ccagctcgcc cgcgtcgaac gcgctcgcag aaggcgaggt
     1801 tgccacggcg aactcacggc ggatgacggt cttgatgtac tgcctgatgg ggttggcgac
     1861 gcggtgaatg cgctgcgcta tgttctcggc tttggttatc agctcctcga gagtcctgtc
     1921 taggttctcg ccgatatttc cgacgatcct gatcacatcc ctgttttccg tcacggcgtc
     1981 cttgatcatc tggaacgctg tcaggtgcgc gctctcggtg cggtggaagg tgtttatgaa
     2041 cgccctttct tccgggccgt cggggtcgta gtcggccttc agggcgggcg tcccgcctga
     2101 atagtcgtat gggttctcat aacccatcct gaagttcgcg accgcctcct gggctttctc
     2161 caaatgctcc tgcgccctgc gaagcgcctt cggcaggttt actttcaggg agtcgagata
     2221 gtcttcgaca gttttcagag ttatcagctc tttctggccg gtgtgcgggc tatcaatgtc
     2281 cggcggcagt agttggttcg gctggccgat gccgaaatct ttttcttccg agttgaagaa
     2341 gtgggcgatt tggccggcgc gcgggttggt ggagatttgg caatcgagcc acatccgctc
     2401 catcacgcgg ttcgcccgca ggcgcagcgg gtgggtctcg tcctttccgg catcgcccaa
     2461 actttccatc gccgctttga gttcgcagta gcgtgtgttc agccgtcgca cgctctcgaa
     2521 aaaactggcc gtccgcttga tcgagtcctc gaaggcgaat atcgcgcgga cgcactcgcc
     2581 ggtgacgaac gccgaagtcc tcccgcccga gccggcgcgc gccgcaccga ccgtccagtc
     2641 aatcgtcccg gcgacgtaga gttcgcgcac gatgcggtag taacagtaca tcgtcgcctc
     2701 gctgaagacg gtgttcgagc ggctgacgag ggtttgcatg gcgcgcgccg ccatgaggac
     2761 ggagacagtc ggctgcgcgt cgaacaggct cgacggcagg tcttttatgt ccgggaagaa
     2821 accattgatt gagaggttca gcagtctcct cttcagctcc ggcgtcgcgt cggtgttgtt
     2881 gttggcgtcg tcgtcaacgc tcagatccgc gtggttctgg attttggtga cgagcgcgac
     2941 ctcgacctcg ttgccgttgc ggagccagtc gtccagcctg caaacgtttc gatctttttc
     3001 ggctatcaga atcttcctgc gcttgttagg cacgccgcgt tctttggagt attcgatgga
     3061 cttaatgttt cgcagcgggc gcaggctgcg ctccctcagc tctttcgcgc ggtcgcggag
     3121 cagattcaac tcgcggagga tttcgaggtc gtcgtgaaga gtgttcatgc cggaggcgtg
     3181 agcgcgggtg gccggctcgt cctttcatgc tttggttggg taaagcactt acgcgccggt
     3241 agtcattgcg cgcgttcctc tgtggataag gtgaagaggc ggaatcgcaa gcgtaaggag
     3301 cgtgcttata gtgaagtaaa actctgctcg atctctacac cggcttctct tccatttaac
     3361 ctggcccagg acggcctacc gccaggttgc gagggggctg aatgataaca ccggcctcgc
     3421 acgattgaca tacttttctc gcccatggga caacttttaa gccttcaaca tcgcacggat
     3481 taaaagttca gctcgaggcc gaactcggaa cagttcggct cagttcaaag gcgctctaaa
     3541 tcttcagttt tcgttaaatc aaaagtgaat gccggggttt cgacgagatt ccgaggcgcg
     3601 cgcgtctcaa ctaatatctt gacgataccc ggtggcgggg atatccttcc aaccctacag
     3661 acatactccc cgataaaggc tcgcacacct accgcacagg aaagaggtag aacactatgt
     3721 ttttccgttc cgtcacccaa cgtgcacgtc ttgtcgggtc aacactgctc ctcgctctgg
     3781 cttcggcgct tccggcggcc gaagtcgcgg cacagagcgt gaccttcagc gggaggcaga
     3841 ttccgacggg cggccagtac catctcaccg cggactttaa cggcgacggc cgcgccgaca
     3901 tcgccgccgc cggcctcgac gtcgaaatcc tgctcgggct gggcaacggc acgtttcagc
     3961 cgaacgtgaa gtaccccatc ggcaccagcc tgagcgggat cacgaagggc gattttaaca
     4021 acgacgcgaa actcgacatc gccgtctcca tcacggccac ggtcgaggtc gcggtgctgc
     4081 tcgggaacgg cgacggcacc ttcagccagg cgaacagatt cccgacgaac gcgacgggca
     4141 gccccacatc ggtcgccgcc gccgacttca acctcgacgg gcggctcgac ctgattacgt
     4201 ccgacccgat ctactgccgc accgcgccgt gcttcctgac aaagacggcc accgtgcttc
     4261 tcgggaacgg cgacggcacc ttccagacgc cctggcagtt cgacacggtg actcccgtgc
     4321 atcagttcga ggtgggcgat ttcaaccgcg acggcatgac cgacgtgatc ggcgcggccg
     4381 cgttcggcaa ggtcttgatc ctgctcagca acggggacgg gactttccgg cgggcgccgg
     4441 acgtcctcgt cgtgcagaac gttgacaaca cggacgtggc cgtcagcgat tacaacggcg
     4501 acggggcctt ggattttgta accatcgccg acggcgagag caggtttggc gtggcgctgg
     4561 gtaacggcga cggcactttc cggcccgtca cggtcatcac ggacgcgctg caccagcgag
     4621 gctggcgact agtcccggcc gacttcaacc gcgacgggcg gctcgacgtc ggcataggct
     4681 tcggccactg ctgcatagac cgcggctccg gcgcgttcgg cctgatgctc ggcaacggcg
     4741 acggcacgtt ccaaaacatc ctgcgctaca tcaggcccga gaacggcatc atctcgctcg
     4801 cggcgattga ccctgcggtc gccgacttca acggcgacgg caaactcgac gtcgcggccc
     4861 agttccacaa cgcggtcggg ggcagcacgc gcgggacgat catcctgacc aacacgagcg
     4921 gcgtctcgcc gcgctcgccc gccctcgggg ctttcaccgc agacccaccg acgctcgtcg
     4981 gcgggacgac gggcgagctg aacctcgcgc tcgcgtccgg ctcggtcgcg cccacgggta
     5041 acatcacttt cacgctctcg aacaacaacc cttcggtcgc ctccttcccg ttcccgatga
     5101 gctcgccgcc gttcgtgatg gtgcagggga tgacgaacct acggttcaag gtcagcacca
     5161 accacgtctc gacgccgcag gacgtttcca tcaccattag gaacgacaac ctcggcagcc
     5221 ggactctgac tctgaaggtc gtgccgccga gcacgccgct cgccctcggt tcgctggaga
     5281 tgcgcccgtc ggggattttc ggcggtaacg acgggagcgg cgtcgtcacc ctggagacag
     5341 ggcacctcgc gccgccgggc ggcgccctcg tcacgctcac gaacgacaac ccaggcctga
     5401 ttacgtacat gcctccgagc gtgacgatac ccgcggggca gaccaccgcg ggcttccccg
     5461 tccatacgtg gacgacgggg acggccacgc ccgtaaactt cactgcgagc tacggcggcg
     5521 tgaccaagac gggcgtgatg accgtccacc cgccgtcgca gcccgtccca atctcctcgg
     5581 tcacgctctc gccgtcatca atcgtcggcg gcagcgcccc ggccgcgcgc ctgaccgtca
     5641 cgctcgcgtc gaacgcgccg ccggagggcg cgacgataat gctcgtgagc agccgccccg
     5701 acgtggtcgc gctcccgcgc tccgtccgca tccacatctc gactcagtcg agcgcgtccc
     5761 tcgatgtcgt caccagcccc gtctcggccc ccaccgaagt gaccgtcacg gcgtacttcg
     5821 gcgactcggt gcggagcgcg acactcaccg tcacgccgcc gccggagaac acccccgttc
     5881 tgtcctcgct gactttgagc ccggcgagcg tcgcgggcgg gacggcctcg cgtgggacgg
     5941 tcacaatcag cgcggcttcg ccgtcttcga cgaccgtctc tttgtcgagt tcgagtgcgc
     6001 ccgtcgtgac cgtcccgacg agcgtgacga tccctgcggg agcgacgagc gccagcttca
     6061 ccgtcaacac gacctcggtc tcctcgtcgt tcgacgcgac gatcacggcc tcgctgaatg
     6121 ggttatcgcg ctcggccgtc ctgagcgtca cgccggccac cgacacggtt gcgatccagc
     6181 gcgccgagta cgaatcttca aaacgggcgc tgcgcgtcga ggccactagc acacgcacga
     6241 acgccacgat gaaggtcttt gtcacgtcaa cagggcaggt catcgggacg ctcgcaaaca
     6301 acggcggcgg gaagtacagc gcctcgctca actggtctgt gaacccgcag aacgtcaccg
     6361 tccgcagcag cttcggcggc tcggcgtcga ggtctgtcgt gttgaagtag cggggcgttc
     6421 ggtttaccgc cacacgcccc gggcacaaaa gcaggagcgg gcgcgggctt taaacctccc
     6481 tgtgtaaagc ccgcgcccgc tcctgctttt gtatccgggg cgtgtggcgg taaaccgaac
     6541 gccccgttac ttcaacacga cagacctcga cgccgagccg cc
//
LOCUS       DASPKR010000348         3229 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_953618, whole genome shotgun sequence.
ACCESSION   DASPKR010000348 DASPKR010000000
VERSION     DASPKR010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3229)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3229
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_953618"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..302)
                     /locus_tag="VD968_09440"
     CDS             complement(<1..302)
                     /locus_tag="VD968_09440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14649.1"
                     /translation="MSRNFRTFAAAALLAPALTQSAAAQSLFEMPEGVETRWASSENQ
                     RGEKGKGGQANAGRKGSPTVPIRAGESRVLAEVSGSSGTVRRIWMTIPDRSPRMLR"
     gene            complement(324..875)
                     /locus_tag="VD968_09445"
     CDS             complement(324..875)
                     /locus_tag="VD968_09445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HYE14650.1"
                     /translation="MRSAKPYAPLALCVCALVFSAARASQPGAAAVAPCDAEAYVIDQ
                     DPAGTNVRAAPGKTSKVIGNLPNETNGGIVVHISGASGGWVRIDRAVEVGGDEEIVRF
                     KGAGWVYGPLLGVDGVGWVEGGTKLHAQPSAGSKVLARMKVDVGGAKVLGCRGKWLQV
                     EHKGVRGWATTDTLCSNPLTNCS"
     gene            complement(971..1831)
                     /locus_tag="VD968_09450"
     CDS             complement(971..1831)
                     /locus_tag="VD968_09450"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HYE14651.1"
                     /translation="MRLTDFMGSFSRQTIIILGLLLVLLLGVVDFLNGPEVSFLLFHT
                     APVILAAWYAGRRAAFAVCGASGLLWLAVAYATSGHFAHPFIAYWNVAVRLGFMFVLA
                     HIVAAFRDSHAHERELARTDYLTGAVNWRYFNELAEGEINRARRHAHPFSVAYMDVDD
                     FKLVNDRHGHSAGDRLLKTIADGLRANVRAVDTVARLGGDEFAVLMPETGQAAAQVVI
                     RRVRRRLLEAARREGWPVTLSIGVVTWEEPPRSVDEMLRAADGLMYSAKRLGKNTIRH
                     SVSHNPANAA"
     gene            1948..>3229
                     /locus_tag="VD968_09455"
     CDS             1948..>3229
                     /locus_tag="VD968_09455"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HYE14652.1"
                     /translation="MLDFALLYEHLRQGPDVKLCPACNGTFDDAATFCPRDGEVLQES
                     PESIVGRVIDGKYQVEGFIAQGGMGAVYRARHILLGDSVVIKTLRPEMRTNAEWLKRF
                     QREGKAARAFRHPNSVTVYDLSAGGDGLIYMVMEYVEGHTLDEELKRRGRFTPSEAVE
                     VLAPVAAVLDAAHARGVVHRDLKPENVMLGRADDGSTVVKVLDLGIAKIVGGEGPHAA
                     SATSLTVAGQILGTPYYMSPEQWGELPRDGNPEVDGRSDIYSLGVIFFELIAGRKPLG
                     GRTLSELRQKHVAAPLPLLHEVAEGVSEQFGRAVARAMAKDRGDRPPTAGALINELRD
                     ALRSASRVTGANALEAATSQRHGAEGGVETEQANAYLTSNALDTSRADTVLTSEREGL
                     QVFAPETSAQSPRPTVGGNAVARRPAPETVAVASS"
BASE COUNT          506 a         1102 c         1126 g          495 t
ORIGIN      
        1 cttcggagca tgcgggggct gcggtcgggg atggtcatcc agattcttcg caccgtgccg
       61 ctggagcccg agacttcggc gagcacgcgg ctctcgcccg ccctgatggg gacagtgggc
      121 gagcccttgc ggcccgcgtt cgcctgcccg cctttgccct tctcgccgcg ctggttctcg
      181 ctgctcgccc agcgggtctc gaccccctcc ggcatctcga agagcgactg cgccgcggcc
      241 gactgcgtga gcgccggcgc gagcagcgcc gccgccgcga acgtcctgaa gttccgtgac
      301 atcattcccc tccgcgcctc cgtctagctg caattcgtga gcgggttcga gcagagcgtg
      361 tcggtagtgg cccagccgcg cacgcccttg tgctcgacct ggagccactt gccgcggcag
      421 cccagcacct tcgcgccgcc cacgtccacc ttcatgcgcg cgagcacctt gctcccggcc
      481 gagggctgcg cgtggagctt cgtcccgccc tcgacccatc cgacgccgtc aacgccgagc
      541 agcgggccgt aaacccagcc cgcgcccttg aagcggacga tctcctcatc gccgccgact
      601 tcgacggccc tgtcaatccg cacccacccg ccgctcgccc ccgagatgtg gacgacgatg
      661 ccgccgttag tctcgttcgg caggttgccg atgactttgg aagtcttgcc cggcgcggcg
      721 cggacgttcg tgcccgcggg gtcttggtca atcacgtaag cctcggcgtc gcagggcgcg
      781 acggccgccg cgccgggctg agaagcgcgg gccgccgaga agacgagcgc gcacacgcac
      841 agggcgagcg gggcgtaggg cttggcagag cgcaaccggg gtgcctcccg tcgtagggtt
      901 gtaatgatga aggcccggct agactgacac cgctgcggcg tctccgtcaa caacaaattg
      961 tacgagggct tcaggcggcg ttggcggggt tgtgcgagac ggagtgtcgg attgtgttct
     1021 tgccgaggcg cttggccgag tacatcaggc cgtcggcggc gcgcagcatc tcgtcaaccg
     1081 agcggggcgg ctcctcccat gtgacgacgc cgatgctgag ggtgacgggc cagccctcgc
     1141 gccgcgcggc ctccaacagc ctgcgccgca cacggcgtat gacgacctgc gcggccgcct
     1201 gccccgtctc cggcatgagc accgcgaact cgtcgccgcc gagccgcgcc acggtgtcaa
     1261 cggcgcgcac gttcgcgcgc aggccgtcgg cgattgtctt gagcagccgg tcgcccgcgc
     1321 tgtggccgtg ccggtcgttg acgagcttga agtcgtcaac gtccatgtat gcgacgctga
     1381 acgggtgtgc gtggcggcgc gcgcggttta tctcgccctc ggcgagctcg ttgaagtagc
     1441 gccagttgac cgcgccggtg aggtagtcgg tgcgtgccag ctcgcgctcg tgcgcgtgag
     1501 aatcgcggaa ggccgcgacg atgtgcgcca gcacgaacat gaagccgagg cgcacggcga
     1561 cgttccagta ggctatgaag gggtgcgcaa agtggccgct ggtggcgtag gcgacggcga
     1621 gccaaagcag gccgctcgcg ccgcagacgg cgaaggccgc gcgccggccc gcgtaccacg
     1681 cggcgagtat gacgggcgcc gtgtggaaga gcaggaacga aacctccggg ccgttgagga
     1741 agtcaacgac gccgagcagc agtacgagca gcagcccgag gattattatg gtttgccggg
     1801 aaaaactccc catgaaatcg gtcagtctca tagcacggtg gcctctcgcg agggcgggga
     1861 cggccgaggg tttgattagc gtgaggggtg ttggcgttgc tttaacagcg gcggccgaaa
     1921 gcgtttcttc cgcggcgaag tcgcggcgtg ctagacttcg cgctgcttta tgagcacctt
     1981 cggcaaggcc ctgacgtgaa gctctgcccc gcatgcaacg gcacgttcga cgacgcggcg
     2041 accttctgcc cgcgcgacgg cgaggtcttg caggagtcgc ccgagtcaat cgtcggccgc
     2101 gtcattgacg gcaaatacca ggtcgagggc ttcatcgcgc agggcggcat gggcgccgtc
     2161 tatcgcgcgc gccacatact gctcggcgac agcgtcgtga ttaagacgct caggcccgag
     2221 atgagaacga acgccgagtg gctcaagcgc ttccagcgcg agggcaaggc cgcgcgcgcc
     2281 ttccggcacc cgaactccgt cacggtctat gacctctcgg ccggcggcga cggcctcatc
     2341 tacatggtga tggagtacgt cgagggccac acgctcgacg aggagctgaa gcggcgcggg
     2401 cggttcacgc cgtcggaggc ggtcgaggtg ctcgcccccg tagccgccgt gctcgacgcc
     2461 gcgcacgcgc gaggcgtagt ccacagagac ttgaagcccg agaacgttat gctcggccgc
     2521 gccgacgacg gctcgaccgt cgtcaaggtg ctcgacctgg gcatagcgaa gatagtgggc
     2581 ggggagggcc cgcacgccgc gagcgccacg tcgctgacgg tcgcaggcca gatactcggc
     2641 acgccttact acatgtcgcc cgagcagtgg ggcgagctgc cgcgcgacgg caaccccgaa
     2701 gttgacgggc gctccgacat ctactcgctc ggcgtgatct tcttcgagtt gatagcgggc
     2761 cgaaagccgc tgggcggtcg cacgctctcc gagcttaggc agaagcacgt cgcggcgccg
     2821 ctgccgctgc tgcacgaagt cgcggagggc gtttcggagc agttcggccg cgccgtcgcg
     2881 cgcgcgatgg cgaaggacag gggcgaccga ccgccgacgg ccggcgccct catcaatgag
     2941 cttcgggacg cgctccgctc tgcgtcgcgc gtgacaggcg ccaacgcgct cgaagcggca
     3001 acgtcgcagc ggcacggagc cgaaggcggc gtcgagacgg agcaggctaa cgcctacttg
     3061 acctcgaacg cgctcgacac tagccgcgcc gacaccgtcc ttacctccga gcgcgagggg
     3121 ctacaagttt tcgcgcccga gacctccgcg cagagcccgc gccccacggt gggcggcaac
     3181 gccgtcgctc ggcgccccgc gcccgagacg gtcgccgtcg cttcttcgg
//
LOCUS       DASPKR010000349         8001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_692657, whole genome shotgun sequence.
ACCESSION   DASPKR010000349 DASPKR010000000
VERSION     DASPKR010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8001)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8001
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_692657"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..378)
                     /locus_tag="VD968_09460"
     CDS             complement(<1..378)
                     /locus_tag="VD968_09460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14653.1"
                     /translation="MPNSAQLRLESGGGAAPDFSKGSIFFVGTATVILRYAGFTILTD
                     PNFLHAGDHVHLGYGLTAQRLTNPALEIDELPPLDFCVLSHYHGDHFDRVAEEKLQKD
                     LPIVTTEHAATELKGKGFTAPVAL"
     gene            567..2870
                     /locus_tag="VD968_09465"
     CDS             567..2870
                     /locus_tag="VD968_09465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14654.1"
                     /translation="MNARQLQRRKEITERLWAVEDAATRQHAPEVLAAAERAVGELEE
                     LVRGLGGDADPLEAGRTRRYAADACFTWAANTNAELLERAHQMYLAAEPFVEAGGDPT
                     EIAKLNFNLANTLRLLCRSADRPVMEEVKRRYYRSLQLFRTALPSVVPQVEEALQHTE
                     GALRALLMMSSLQEGQERTRALMEKLKTAAPDDTEVDREVERELEALKSSAHSPAAQL
                     QEMSALLDQIMPTMKAGAAPEEAARFEQQTRGELDRLFEEIDPEARREAEETDELFSY
                     AVKVLTEQAERDGVPKERLESGLDVLEQFRHLAVQSPKTPEGMTANVEQMRGVISRFK
                     HIYAGQGVEGAKPETRAGALVEHMQNLQGFVFDQMNQRLGETEQKTFFDFPRRLAETR
                     RALTEAADDEAATLRVEHDRLRPLALAIRRAGLRRHLTLATPFWGWQKVDANPNFVFY
                     AGGAELKRLVGEACRARTLELSEKSKGWGAGQVRWNQLRESAVGVFDLTTKGGELASV
                     CHALGGALALGIYPVVVTAPGSHLPFDIDLPPVEFPEGAGAAETLGRAIDAALYGTHP
                     TAGASSVDETARRVLAMSDGDDAPTRVLKKRLEGRTGLDPVEAAEVLGSLVAVNGRGR
                     AALVLPLWPGFYPEEKGRRLFHVMPFSREWSNRSRDVVRKACGRRAKYRRGDETEEQQ
                     IIHSIWEEICRATHVLVDLTGLNPNVCLELGLAQALGRPTLLVAQEQAGTVEALFPEI
                     SKLQVKHYKDGDGGASLAAHVEAFLRQ"
     gene            3110..4123
                     /locus_tag="VD968_09470"
     CDS             3110..4123
                     /locus_tag="VD968_09470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14655.1"
                     /translation="MTRNHLAGALALVLALSAYSTAAAQTRRGNPAAPRPQQPRAVPL
                     PASDAVLAADLRRLFNEAIPRALGDDKARIAEVNADVEQFKARTGIDARAFDTLAVGA
                     RVVRLESGATKFDHLVAIARGTFRPDAIVAAGRLAAKGAHREEKYGGKTIHVFGVNDQ
                     LKLFGLLKMKVGVLAMAVLEPDTLAVGEPEAVRAAVDAQAGRGRVDAALMSSLKGGEV
                     IAFAANVPASAFAGVDVGLPEVNKSIAAVRGLYGSLGTTPAGFHMTTVLRTTSAADAR
                     QLGNTIDAVRQIAPGLISMAGERARFAKAAVDSLKITPQGNEVQLRMELAQGDVATLL
                     RSL"
     gene            complement(4196..6247)
                     /locus_tag="VD968_09475"
     CDS             complement(4196..6247)
                     /locus_tag="VD968_09475"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HYE14656.1"
                     /translation="MLKFFTRLERTRNWVIIFFAALLVIGMVVAGVYNRAGVATANPF
                     RSREVLARVRGDDVTVADYSLYKKMQEDQYSRFGGQITLAQLGLTPERLLDQTVNNRI
                     AVQEAERRGLLPSEQEVRETITRLFSDAANKFDLKRYKDFVVRNYGGVSLYEQSVRES
                     LAADRLRAFVTAGVQVSEEDVKRDYVRENTSFDLVYVPVTPADVAKKITPSDEELRQF
                     FEEHKTDYRFLEPQRKVRYLFISQEKVGEKLQIPDEDLRREYEQLKPENKMSGVRVQQ
                     IVMKVARPELDQEVLGKASALVARIRKDDLTAEEEAFAEAARGNSEDPATAQKGGWLP
                     NPVRRNPNRKPGAPGDAQALVQNVFDWKEGQIGDPLKTGNAYYIFRRGPSIPKTFEEA
                     KNELLVSARNRRSYAAAQQIARRAAERLKATKDFEAVAREFAAEANMSPAEMIKVTPF
                     VKPDDVVPDIGNNQQFHDAIKALEEPGQMGDQLAIPNGFAVPSLVEKREPRIPELDEV
                     KDRVAEAFKNERAKQQLEQAARELASAAGSADALKAAAERLGLTAETEEGYRLGRPLG
                     KAGADPALDAAVFALKAGETTKTPVKVGDNWVVVGATKREDADLAKFGEQRTSLIESA
                     LNTRRSQVFDEFITSVRRRLEQEGEVELKSEALAKLEETEAPSAVPRMPPINVPAPAG
                     E"
     gene            6462..7526
                     /locus_tag="VD968_09480"
     CDS             6462..7526
                     /locus_tag="VD968_09480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002640542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HYE14657.1"
                     /translation="MDFLYATWAGYPVWAWGGFAVFILLMLALDLGVLNRKAHAITYR
                     EAATWSVVWVTLALVFAGLVFWREGRITGVEFFTGYIIELSLSVDNLFVFLLIFGYFK
                     VPAKYQHRVLFWGVMGALIMRMTMIALGAALIERFHWIIYVFGVFLIYTGIKMMRQGE
                     TEVHPEDNPVVRFVTRFVPMTRHYDGEKFFTEVNGRRMGTLMLLVLITVEVTDLVFAV
                     DSIPAIFGITTNTFIVYTSNVFAILGLRSLYFLLAGVVEKFHYLKIGLSIVLAFVGVK
                     MLTEGFIKESLGLSKETIIVASLGVVGAVLLSSVAASLIWPKEAETHIEVELPEGFNS
                     PFDDDQGRLGGDESGLPERR"
     gene            7738..>8001
                     /locus_tag="VD968_09485"
     CDS             7738..>8001
                     /locus_tag="VD968_09485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14658.1"
                     /translation="MGTRVSRFDVEWWIVPKRLIYIVILLAFFSLLAGGAGVYVWVYG
                     NPFRGVAADAGKPSGARFVSLEGGVRVVRADTREVLMARADTRL"
BASE COUNT         1215 a         2688 c         2709 g         1389 t
ORIGIN      
        1 gagcgcgacc ggcgcggtga agcccttgcc cttcagctcc gtggcggcgt gctcggtggt
       61 gacgatgggc aaatccttct gcaacttctc ctcggcgacg cggtcgaagt ggtcgccgtg
      121 gtagtgcgag aggacgcaga agtcgagcgg cggcagctcg tcgatctcca gggccgggtt
      181 ggtgagcctc tgggccgtca gcccgtagcc gaggtgcacg tggtcgccgg cgtgcaggaa
      241 gttcgggtcg gtgaggatgg tgaagccggc atagcgcagt atcacggtcg cggtgccgac
      301 gaagaagatc gagcccttcg agaagtccgg ggcggcgccc ccgcccgact ctaggcgtag
      361 ctgcgcggag ttcggcattc aggaatcccc cttgctcgct ggcgttcgtc ttgccggcaa
      421 ttataggcgc gccccgcccg agcgcctgtc ctatttcata cacaaagctg tcgcgcggcc
      481 gttgccttcg cggcgcgccc gcacgtatca tcggcgcgcc tcgccgccct cgcttttccc
      541 aacctcacgc gaaggaggat taagagatga acgcacgaca gcttcagagg cggaaagaga
      601 taacagagcg gctctgggcc gtggaggacg ccgcgacgcg gcagcacgcc cccgaggttc
      661 tggccgcggc cgagcgagca gtcggcgagt tggaggagtt ggtgcgcggc ctcggcggcg
      721 acgccgaccc gctcgaagcc gggcgcacgc gccgttacgc ggccgacgcc tgcttcacct
      781 gggcggcgaa cacgaacgcc gagctgctcg agcgcgccca ccagatgtac cttgcggccg
      841 agcctttcgt ggaagccggc ggcgacccga cggagattgc caagctcaac ttcaacctcg
      901 cgaacacgct ccgcctgctc tgccgcagcg ccgaccgccc ggtgatggag gaagtgaagc
      961 ggcgctacta ccgctcgctc cagctcttcc gcacggcact cccctcggtc gtcccgcagg
     1021 tagaggaggc attacagcat accgaggggg cgctgcgcgc cctcttgatg atgagttctt
     1081 tacaggaggg gcaggagcgc acgcgcgccc tgatggagaa gctaaagacg gccgcgcccg
     1141 acgacacgga ggtggatcgc gaggtcgagc gcgagctcga ggcgctcaag agttcggcgc
     1201 acagccccgc ggcgcagttg caggagatga gcgcgctgct cgaccaaatc atgccgacga
     1261 tgaaggccgg cgccgcgccc gaagaggccg cccggttcga gcagcagacg cgcggcgagc
     1321 tcgacaggct cttcgaggag atagacccgg aggcccgccg cgaggccgag gagaccgacg
     1381 agcttttcag ctacgccgtc aaggtgctca cggagcaggc cgagcgcgac ggcgtcccga
     1441 aggagaggct tgagtcgggc ctcgacgtgc tcgaacagtt ccgccacctc gccgtgcagt
     1501 cgccgaagac gcccgagggg atgacggcca acgtcgagca gatgcggggc gtgatctcgc
     1561 ggttcaagca catctacgcc gggcagggcg tcgagggcgc gaagcccgag acgcgcgccg
     1621 gcgcgctcgt cgagcacatg caaaacctac agggcttcgt cttcgaccag atgaaccagc
     1681 gcctcggcga gaccgagcag aagacgttct tcgacttccc gcggcggctg gccgagacgc
     1741 gccgcgcgct caccgaggcg gccgacgacg aggcggccac gctccgcgtc gagcacgacc
     1801 gcctgcgccc gctcgcgctc gccatacgcc gcgcggggct gcgccgtcac ctcacgctcg
     1861 ccacaccgtt ctggggctgg cagaaggttg acgctaaccc caacttcgtc ttctacgccg
     1921 gcggcgcgga gctgaagcgt ctggtcgggg aggcgtgccg cgcgcgcact ctggagcttt
     1981 cggagaagtc gaagggctgg ggcgcggggc aggttcgctg gaaccagttg agggagagcg
     2041 ccgtcggcgt cttcgacctg acgacgaagg gaggcgagct cgcatcggtc tgccacgcgc
     2101 tcggcggcgc gctcgcgctc ggcatctacc ccgtggtcgt gacggcgccg ggctcccacc
     2161 tgcccttcga catagacctg ccgccggtgg agttcccgga gggcgcgggc gccgccgaga
     2221 ctcttggccg cgcgatagac gcggcgctct acggcacgca ccccaccgcg ggcgcaagct
     2281 ccgtggacga gacggcgcgg cgcgtgctcg ccatgtcgga cggcgacgac gcgccgacgc
     2341 gggtgctcaa gaagaggctc gaagggcgca cggggctcga ccccgtagag gccgcggagg
     2401 tcttgggctc gctcgtcgcc gtgaacgggc gcgggcgcgc ggcgctcgtc ctgccgctct
     2461 ggcccggctt ctaccccgag gagaaggggc gcaggctctt ccacgtgatg cctttcagcc
     2521 gggagtggtc gaaccgctcg cgcgacgttg tgaggaaggc gtgcgggcgg cgggcgaagt
     2581 accgtcgcgg cgacgagacg gaggagcagc agataatcca ctccatctgg gaggagattt
     2641 gccgcgccac gcacgtactg gttgacctta cggggctgaa cccgaacgtc tgtctggaac
     2701 tggggctggc gcaggcgctc ggccgcccga cgctgctcgt cgcgcaggag caggccggca
     2761 cggtcgaggc gctcttcccc gaaatctcca agctccaagt caagcactac aaggacggcg
     2821 acggcggcgc ctccctcgcc gcccacgtcg aggcgttcct ccgtcagtaa gattagccac
     2881 ggaggcacgg aggagaaggc agaaggcagc cgatgaagtt agcgccggct gccttctgct
     2941 ttctgccttc atccttttct ccgtgccttc gtggctaaac cctgcttttg ccctcacgcc
     3001 cctcggtcgt ttatgcttgg cggcagccaa ccccccggcg cgcgcggcgc atccgaaccg
     3061 cacttgactc ccccttcagt taactctggg aagactggtg aaaggctcta tgacaaggaa
     3121 tcatctcgcc ggcgctcttg cgctcgtgct agctctctcg gcctactcga cggccgccgc
     3181 gcagacgcgg cgcggcaacc cggccgcgcc aaggccgcag cagccgcgcg ccgtgccgct
     3241 gcccgcctcc gacgccgtgc tcgcggccga cctgcgcagg ctcttcaacg aggcgatccc
     3301 gcgcgcgctc ggcgacgaca aggcccgcat agccgaggtc aacgccgacg tggagcagtt
     3361 caaggcgcgc actgggattg acgcgcgcgc cttcgacacg ctggccgtcg gcgcccgcgt
     3421 cgtcaggctc gaatccggcg cgacgaagtt tgaccacctc gtcgcgatag cgcgcggcac
     3481 cttccgcccc gacgcaatag tcgccgccgg ccgtctcgcc gcgaaggggg cgcaccgcga
     3541 agagaagtac ggcggcaaga ccatccacgt cttcggcgtc aacgaccagt tgaagctgtt
     3601 cgggcttttg aagatgaagg tcggcgtgct cgcgatggcc gtgcttgagc ccgacacgct
     3661 ggccgtcggc gagcccgagg ccgtgcgcgc cgccgtggac gctcaggccg ggcgcgggcg
     3721 cgtggacgcc gcgctgatga gctcactgaa gggcggcgag gtcatagcct tcgcggccaa
     3781 cgtgccggcg tcggccttcg cgggcgtgga cgtggggctg ccggaggtga acaagagcat
     3841 cgccgcggtg cgcggcctct acggctcgct cggcaccacg cccgcgggct tccacatgac
     3901 gaccgtgctg cgcactacga gcgcggccga cgcgcgccag ctcggcaaca cgattgacgc
     3961 agtcaggcag atagcgccgg gcctgatctc tatggcgggc gagcgcgctc gcttcgcgaa
     4021 ggccgccgtt gacagcctca agatcacgcc gcagggcaac gaagtccagc tccgcatgga
     4081 gttggctcag ggcgacgttg cgacgctgct gcgctcgctc taaacaggta gtaaagacgg
     4141 gaagggggac gacggtcgtg ctgagcgtcg tcccccttcc cctttatctt ccgccctact
     4201 cgcccgcggg cgcgggcacg tttatcggcg gcatgcgcgg gacggccgag ggcgcctcgg
     4261 tctcttcgag cttggcgagc gcctcggatt tcaactcgac ctcgccctcc tgctcgagac
     4321 ggcggcggac ggacgtgatg aactcgtcga agacctggct gcgccgcgtg ttcagggccg
     4381 actcgatgag cgaggtgcgc tgctcgccga atttggcgag gtctgcgtcc tcgcgcttcg
     4441 tcgcgcccac gacgacccag ttgtcgccga ccttcaccgg cgtcttcgtc gtctcgccgg
     4501 ccttcaaggc gaagacggcc gcgtcgagcg cggggtcagc gccggccttg cccagcgggc
     4561 ggccgaggcg gtagccctcc tcggtctcgg ccgtcaggcc cagccgctcg gccgcggcct
     4621 tcagggcgtc ggcgcttccc gccgcggagg cgagttcgcg cgccgcctgt tcgagctgct
     4681 gcttggcgcg ctcgttcttg aaggcttcgg cgaccctgtc tttaacctcg tcaagctcgg
     4741 gtatgcgcgg ctctcgcttc tcgactagcg aggggacggc gaagccgttc gggatggcta
     4801 gctggtcgcc catctggccc ggctcttcga gcgccttgat ggcgtcgtgg aactgctggt
     4861 tgttgccgat gtcgggaacc acgtcgtcgg gcttgacgaa gggcgtgacc tttatcatct
     4921 ctgcggggct catgttggcc tcggcggcga actcgcgcgc gaccgcctcg aagtccttcg
     4981 tggccttcag gcgctcggcg gcgcggcgcg ctatctgctg cgcggcggcg taggagcggc
     5041 ggttgcgggc cgagacgagc agctcgtttt tggcctcctc gaacgtctta gggatcgagg
     5101 ggccgcggcg gaaaatgtag taagcgttgc cggtctttaa ggggtcgccg atctgcccct
     5161 ccttccagtc gaagacgttc tggacgagcg cctgcgcgtc gccgggcgcc ccgggcttgc
     5221 ggttcgggtt gcgcctgacc gggttgggga gccagccgcc cttctgcgca gtcgcggggt
     5281 cttccgagtt gccgcgcgcg gcctcggcga aggcctcctc ttcggcggtg aggtcgtcct
     5341 tgcgtatccg cgcgacgagg gcgctcgcct tgccgagcac ctcctgatcc agctcagggc
     5401 gcgcaacctt catcactatc tgctggacgc gaacgcccga catcttgttc tcgggcttga
     5461 gctgctcgta ctccctgcgc aggtcttcgt cggggatttg cagcttctcg ccgaccttct
     5521 cctggctgat gaagaggtag cgaaccttcc tctgcggctc gaggaagcgg tagtcggtct
     5581 tgtgctcctc gaagaactgg cgaagctcct cgtcggacgg cgttatcttc ttcgccacgt
     5641 cggccggcgt gacgggaaca tagacgaggt cgaacgaagt gttctcgcgg acgtagtcgc
     5701 gtttcacgtc ctcctcggag acctgcacgc ccgccgtgac gaaggcgcga aggcggtcgg
     5761 ccgcgaggct ctcgcgcacg ctctgctcgt agagcgagac gcccccgtag ttgcgcacga
     5821 cgaagtcctt gtagcgcttg aggtcgaact tgttcgcggc gtcgctgaag aggcgcgtga
     5881 tggtctcgcg cacctcctgc tcggagggca ggaggccgcg gcgctcggcc tcctggacgg
     5941 cgatgcggtt gttgacggtc tggtcgagca ggcgctcggg cgtcaggccc agctgcgcca
     6001 gcgttatctg cccgccgaag cgcgagtact gatcctcctg catcttcttg tagagcgagt
     6061 agtctgccac cgtcacgtcg tcgccgcgga cgcgcgcgag cacctccctg ctcctgaacg
     6121 ggttggcggt cgcgacgccc gcacggttat agacgcccgc gacgaccatg cctatcacga
     6181 gcagcgccgc gaagaagatt atgacccagt tgcgcgtgcg ctctaggcgg gtgaagaatt
     6241 tgagcattgc cgttgacctt cccttaacag cctctgtttg tccggggttt tttgactgac
     6301 gaaagcgccg ggaggcgcgc gcaggcccga aggcgtgccg ccgcgcgctc cccgcaaaac
     6361 gcggattgta gcgcgcccgg ctcgcgccgc gcaaacgcga cggccggcgc gctccgcccc
     6421 ctaactcccg cccgccgtct tgtgctataa actcctcaac tatggatttc ctatatgcga
     6481 cgtgggctgg ttacccggtc tgggcttggg gggggttcgc cgtcttcatc ctgctgatgc
     6541 tggcgctcga cctcggcgtc ttgaaccgca aggcgcacgc catcacctac cgcgaggctg
     6601 cgacgtggag cgtcgtgtgg gtgacgctcg cgctcgtctt cgccggcctc gtcttctggc
     6661 gcgaggggcg catcacgggc gtcgagttct tcacgggcta catcatcgag ctgtcgctct
     6721 ccgttgacaa cctcttcgtc ttcctgctca tattcggcta cttcaaggtc ccggcgaagt
     6781 accagcaccg cgtgctcttc tggggcgtga tgggcgcgct cattatgagg atgacgatga
     6841 tcgcgctcgg cgcggccctc atcgagcgct tccactggat catctacgtc ttcggcgtct
     6901 tcctaatcta cacgggcatc aagatgatgc ggcagggcga gacggaggtt cacccggagg
     6961 acaaccccgt ggtgaggttc gtcacgcgct tcgtcccgat gacgcgccac tacgacggcg
     7021 agaagttctt cacggaggtc aacggccggc gcatggggac gctcatgctg ctcgtgctca
     7081 tcacggtgga ggtgacagac ctggtcttcg ccgttgactc catcccggcc atattcggca
     7141 tcaccacgaa caccttcata gtctatacgt ctaacgtctt cgccatactc ggcctgcgct
     7201 cgctctactt cctgctcgcc ggcgtcgtcg agaagttcca ctacctgaag atcgggctct
     7261 ccatcgttct ggccttcgtc ggcgtaaaga tgctgaccga ggggttcatc aaggagtcgc
     7321 tgggcctgag caaggagacg atcatcgtgg cctcgctcgg cgtggtcggc gccgtactgc
     7381 tctcctcggt cgccgcctcg ctcatctggc cgaaggaggc cgagacgcac atcgaggtcg
     7441 agttgcccga gggcttcaac tcccccttcg acgatgacca gggccgcctc ggcggcgacg
     7501 agagcggcct gcccgaaaga cgttaagaag gggccagggg ctagaggccg ggggcgctag
     7561 ttaagaagtc agttattaac tagcgccccc ggcctctagc ccggcctctt ttcccttgct
     7621 ttttaccctc ccgccttgtt aagttttttg tgtggccttg atgcggccac gccacgcgcc
     7681 cccgggccag ccggcccggc cctcagccgc cccgtcacta ttgccagcca gcgtcttatg
     7741 ggaaccagag tcagccgctt cgacgtagag tggtggatag tccccaagcg gctcatctac
     7801 atcgtcatac tgctcgcctt cttctcgctg ctcgcgggcg gggcgggcgt ctatgtctgg
     7861 gtctatggca accccttccg gggcgtcgcc gccgacgcgg gcaagccctc gggagcgcgc
     7921 ttcgtctcgc tcgaaggggg cgtccgcgtc gtgcgcgccg acacgcgcga ggttttgatg
     7981 gcccgcgccg acacgcgcct g
//
LOCUS       DASPKR010000350         3165 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1728171, whole genome shotgun sequence.
ACCESSION   DASPKR010000350 DASPKR010000000
VERSION     DASPKR010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3165)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3165
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1728171"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            533..1786
                     /locus_tag="VD968_09490"
     CDS             533..1786
                     /locus_tag="VD968_09490"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYE14659.1"
                     /translation="MPARYKALSSPRCIRALAAVACAALAALSLAACKSDYPAAGQQR
                     PAGEGRGGGGEARQVRVARVEQMPVGASVTVTGTLAAKDEATLSVKVPGRLSAITVDL
                     GSVVRRGQVVAQIEQQDYRLRVQQAEAALQQARARIGLANGTGSDRADVENTGAVRQA
                     RAVLDEARQNRQRVATLVEQGIVARAEFEAADSAFKVAQSRYQDAVEEIRNREALVAQ
                     RRTELNLARQALADTVVSASFDGIVQERQASVGEYLNAGAPVVTVVRVNPLRFRAEVP
                     ERDATSVRQGQLIRVTVEGDPGLYVGRVVRLSPTINQQNRVLIVEAEISNTGTLRPGG
                     FARAEIVTDSASMAVTVPASSLVTFAGIEKVVVVNNGKAQEKPVTTGRRSETWVEVLS
                     GVNVGDPVVLEPGNLQSGMPVNVVE"
     gene            1795..>3165
                     /locus_tag="VD968_09495"
     CDS             1795..>3165
                     /locus_tag="VD968_09495"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HYE14660.1"
                     /translation="MLVRASSVVLVFALLCGLCLPAAKVRAQAQGAAKADGAYAEKIR
                     AFEEFVRAEMERDRIPGMTVGFSRGDFTWVKGFGYADLENKTPAHADSAYRLASITKS
                     MTGAAVVQLAERGKLDLDGEIQTYVPDYPKQKWPVTVRQLLTHTGGGQTGSGLGTERV
                     TTKEIVARISKYPIEIEPGTRYDYQTSGYNLLGAAIEQVSGQTLEAYMRENLWLPLGM
                     KDTRMDNVRDLVPNRVRGYDLADGEVKNAPFVDVSSRFGGGGATGTVPDLLRWARGIL
                     SGKVLSPKWAEVMLTPVSTKAGRWVGLGDGADYYTLGWIVKPITGSFSIRNEGSQKGT
                     ATAVIYFPEKNLAIAAAANLEFADTYKYISRLYELVTGDEWEVRAFTREKRDAPLARA
                     IDGAFNYGSIYFEQHHRPMAAAPKELADAFAYFNSAASREALAADARKAAGMIRDGRH
                     PAGGNSF"
BASE COUNT          545 a         1070 c         1093 g          457 t
ORIGIN      
        1 cgcttttacg aatttactca gagcggctgc ggtcggcgcc atcttctcac tcttaatact
       61 cgcgaacgca tcggcggcgg gatgcgcgtt tcgaaccgca cgcgacaaga cgaggggccg
      121 gccgaggctt cagttagcct cggccggccc ctcgtcttgt cgcgtgctgt tcgagacgcg
      181 tatcctgccg ccgatgcgtt cgcgagtatt aagagcgaga agatagcgcc gaccgcagcc
      241 gctctgagta aacgcataaa agcgtgcctc cgataaattt tcgcgcgtgc cttttctgac
      301 cgcgccgctc cgaacactaa cgctcggcgg cgcgcgcgaa tgagtcacgg cggccgtccc
      361 ggcgccccgg ccgaaaatcg cgccctactg ccgcgcgggc gcgccgtttt tacaaaactt
      421 tgagaaaatc cggccccgcg tggcaaagcg gcggctcaga atttcatctt tagcgtgtta
      481 aacttttagc ttcagcccgg cgccaaacag cgcggcccaa ggtttagtcg tcatgccagc
      541 tcgttataaa gctctttcct ccccgaggtg tattcgcgcg ctcgcggccg tcgcgtgcgc
      601 ggccctcgcg gccctgtcgc tcgcggcctg taaaagtgac tacccggccg ccggccagca
      661 gaggcccgcg ggcgaggggc gcggcggggg gggcgaggcg aggcaggtga gggtcgcgcg
      721 cgtcgagcag atgcccgtgg gcgcgagcgt gacggtgacg gggacgctcg cggcgaagga
      781 cgaggcgacg ctgagcgtca aggtgccggg gcgcctgagc gctatcacag ttgacctggg
      841 gagcgtcgtg cggcgcgggc aggtcgtcgc gcagatagag cagcaggact accgcctgcg
      901 cgtgcagcag gccgaggccg ccttgcagca ggcgcgcgcg cgcatcgggc tcgccaacgg
      961 cacgggcagc gaccgcgccg acgtcgagaa caccggggcc gtcaggcagg cccgcgcggt
     1021 actggacgaa gcgcgccaga accgacagcg cgtcgcgacg ctggtcgagc agggcatagt
     1081 cgcgcgcgcg gagttcgagg ccgccgactc ggccttcaag gtcgcgcaga gccgctacca
     1141 ggacgccgtg gaggagattc gcaaccgcga ggccctcgtc gcacagcgcc gcactgagct
     1201 taatctcgcg cgccaggcgc tcgccgacac cgtcgtctcg gcttctttcg acggcattgt
     1261 gcaggagcgg caggcgagcg tgggcgagta cctgaacgcg ggcgcgccgg tggtgacggt
     1321 cgtgcgcgtc aacccgctgc gcttccgcgc cgaggtgccc gagcgcgacg cgacgagcgt
     1381 ccggcagggc cagctcatac gcgtcacggt cgagggcgac cccggcctct acgtcgggcg
     1441 cgtcgtgcgc ctgagcccga ccatcaacca gcagaaccgc gtgctcatcg tcgaggcgga
     1501 gataagcaac acggggacgc tcaggcccgg cggcttcgcc cgcgccgaga tcgtcaccga
     1561 cagcgcgagc atggccgtca ccgtgcccgc gagctcactt gtgaccttcg cgggcatcga
     1621 gaaggtcgtc gtcgtcaaca acggcaaggc acaggagaag cccgtcacga cgggccgtcg
     1681 ctcggagacc tgggtcgagg tgctctcggg cgtcaacgtc ggcgaccccg tcgtgctgga
     1741 gcccggcaac ctccagtcgg gcatgcccgt caacgtcgtc gaataacagt ccagatgtta
     1801 gtcagagcgt cgagcgtcgt gttggtcttc gcgctgctgt gcgggctttg cctgccggcc
     1861 gcgaaggtgc gcgcgcaggc gcagggcgcg gcgaaggcgg acggcgctta cgcggagaag
     1921 attcgcgcct tcgaggagtt cgtgcgcgcc gagatggagc gcgaccgcat acccggcatg
     1981 accgtcggct tctcccgcgg cgacttcacg tgggtgaagg gcttcggcta cgcagacctc
     2041 gaaaacaaga cgcccgcgca cgccgactcg gcctaccgcc tcgcgtccat cacgaagtcc
     2101 atgacgggcg cggccgtcgt gcagctcgcc gagcgcggga agctcgacct cgacggcgaa
     2161 atccagacct acgtcccgga ctacccgaag cagaagtggc ccgtcacggt ccgccagctc
     2221 ctgacccaca cgggcggcgg tcagaccggc tccggcctcg gcaccgagcg ggtgacgacg
     2281 aaagagatcg tggcccgaat ctcgaagtac cccatcgaga tagagcccgg caccaggtac
     2341 gactaccaga cgagcggcta caacctgctc ggcgccgcga tcgagcaggt gtcgggccag
     2401 acgctcgagg cgtacatgcg cgagaacctc tggctcccgc ttggcatgaa ggatacgcgc
     2461 atggacaacg tgcgcgacct cgtgccgaac cgggtacgcg gctacgacct cgccgatggc
     2521 gaggtgaaga acgccccctt cgtggacgtg agctcgcgct tcggcggcgg tggggcgacc
     2581 ggcacggtgc cggacctgct gcgctgggcg cgcggcatcc tctcggggaa ggtgctctct
     2641 ccgaaatggg ccgaggtgat gctgacgccc gtctcgacca aggccgggcg ctgggtaggg
     2701 ctgggcgacg gcgccgacta ctacacgctg gggtggatag ttaagcccat caccggcagc
     2761 ttctcgatac gtaacgaggg cagccagaag gggacggcca cggccgtcat ctacttcccc
     2821 gagaagaacc tcgccatcgc ggcggccgcc aaccttgagt tcgcggacac atacaagtac
     2881 atcagccgcc tctacgagct ggtcacgggc gacgagtggg aagtgcgcgc cttcacgcgc
     2941 gagaagcgcg acgcgccgct ggcgcgcgcc atcgacggcg ccttcaacta cggctcgatc
     3001 tacttcgagc agcaccaccg cccgatggcg gccgccccca aggagttggc cgacgccttc
     3061 gcctacttca actcggccgc gagccgcgag gccctcgccg ccgacgcgcg gaaggccgcc
     3121 gggatgatac gcgacgggcg gcaccccgcg ggcggcaaca gcttc
//
LOCUS       DASPKR010000351        14822 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_566185, whole genome shotgun sequence.
ACCESSION   DASPKR010000351 DASPKR010000000
VERSION     DASPKR010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 14822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14822)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14822
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_566185"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..739)
                     /locus_tag="VD968_09500"
     CDS             complement(152..739)
                     /locus_tag="VD968_09500"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE14661.1"
                     /translation="MTARPEQDESDAALLVAVSRGDEAAFAALYDRYSPILLGLLLRI
                     LRSRAEAEDVLQEVFIQVWRQAGQFDPARGRPFTWLVTLARSRAIDRLRAVESRERAA
                     QRSAEEARPEAATAETADDAAARSEQAEIVRRALAELPEEQRRALLLAYLDGMSQSEI
                     AARTGQPLGTVKTRTRAGLRKLSELLRDRLGAQGV"
     gene            complement(939..2036)
                     /locus_tag="VD968_09505"
     CDS             complement(939..2036)
                     /locus_tag="VD968_09505"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: protein motif:HMM:NF006707.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HYE14662.1"
                     /translation="MATELRREGSALARIEELLGDDGRALLDFSAPKISKDLLQTPGP
                     DFVDRVWADSDRSPSVLRSLQTLFDNGRLAGTGYLSILPVDQGIEHSAGASFAPNPLY
                     FDPENIVKLAIEGGCNAVASTFGVLGSVARKYAHKIPFIVKINHNELLTYPNRFDQVL
                     FGAVDQARDMGAVAVGATIYFGSEESTRQITEIAEGFAIAHELGMATILWCYLRNPKF
                     KTKEGDMHAAADLTGQANHLGVTIQADIIKQKLPERNGGYNALNIESSYGKTNPKIYT
                     ELTSDNPIDLVRYQVANCYMGRCGLINSGGESKGQGDMAEAVRTAVINKRGGGMGLIS
                     GRKAFQRPMQEGVALLNAIQDVYLAEEITVA"
     gene            complement(2148..2780)
                     /locus_tag="VD968_09510"
     CDS             complement(2148..2780)
                     /locus_tag="VD968_09510"
                     /inference="COORDINATES: protein motif:HMM:NF024375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYE14663.1"
                     /translation="MHTLSGEEAAGQAALYALGALEEGEARAFEEHLTAGCEACEAEL
                     RGYGEVVEGLALAAPAAPAPPAGVRSRLLALAAEEPRGDGAGAESCSATAAERPAAEG
                     FYVLRAEEGKWAETDDEGVTYKLLFADRERGTLTTLVRMRPGSRIRPHRHLGVEQCLV
                     LEGDVRSGPYSMKAGDFNCSMPGSVHEELVSDGGALLLLVAPASYESLAR"
     gene            complement(2786..3361)
                     /locus_tag="VD968_09515"
     CDS             complement(2786..3361)
                     /locus_tag="VD968_09515"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE14664.1"
                     /translation="MTGEGARWRQAELIRCVAAGDQQALASLYDSTSRAIYGLLLRIL
                     SDAGAAEEVLLDVYAQVWRQADGYSERRGSPLAWLVTIARSRAIDRLRRARQERELSA
                     PLEAASLRAAGGASAEDEAAAGETRAAVRAALDVLPPEQREVIELAYYSGMSHSEIAA
                     ARGLPLGTVKTRTRLGMARLRETLKAVHERA"
     gene            3638..5719
                     /locus_tag="VD968_09520"
     CDS             3638..5719
                     /locus_tag="VD968_09520"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 and transglutaminase domain-containing
                     protein"
                     /protein_id="HYE14665.1"
                     /translation="MKPPTPLAPRRGAGFLTLTPLLIIFAAAAPAFAQKDWKPVEPSQ
                     LSMSAPVVERDADAEALFWEVRVSYENSGGEPATVLNHYVRIKIFTERGRESQSKIDI
                     YAPKISDREIRIKDIAGRTIKPDGTVVELKKEDIFERDVVKMSGLKVKAKSFAMPAVE
                     PGSIIEYRWREVRNGIRGYERFDFSRDIPVQLVRYFIKPYGEALVDDSGRPVGLRAQT
                     FHGDMTPFVKESGWHSTSMTNVPAFREEPRMPPEYEVRPWMLVYYSSDDKPTPEKVWK
                     AYGRELYEDHKSQMKVSDEIKRTAAEVVAGAATDDEKLDRLFAFVRSKVKNVDDDASG
                     FTREQVEKMKENKNPSDTLKRGVGGWHDIDMLFAALATAAGFDARVAKVTDRSDTFFD
                     PRFPDDYFMRLGSENIAVRVGDKWRFFDPGTTYIPQGMLRWQEEGQLALVSDPKEPVF
                     VPVPQSGPEKSVEKRWAKFKLSADGTLEGEVKIEYTGHLAHDMKESYDEDSPAEREEA
                     LKEKFASRMSGIEITDVKVENVSDPLKPFTYTFRARVPGYAVKTGKRLLIQPAFFQKG
                     SNPLFPTAGRRHHVYFNYPWSEEDYVEMELPEGYALDNPESPAPFGAGALSRYEPKAQ
                     VTTDGRTLIYRRKFFFGGSVDASGPALLFPTTSYEQLKRYFDELHRQDNHTLALKQGA
                     AAAATTTSGNK"
     gene            5733..7718
                     /locus_tag="VD968_09525"
     CDS             5733..7718
                     /locus_tag="VD968_09525"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing transglutaminase
                     family protein"
                     /protein_id="HYE14666.1"
                     /translation="MLRRPIYFATLLGALLLLAAPPEARAGDDAPAWLRQAAGAAAPA
                     YDKKVPAVVLHRERTVTVGEDGRVRTTTTYAVRVLTREGRGAATGGEVYATDTGKVLD
                     FKAWLIRASGTVKKYGKDAAVDMALDDDDVYNEARVRRISAVEDVDGPGDVFGYQVTS
                     EERTVFTQSDWNFQYQLPTLVSRFTIALPAGWRAAGVVFNRPKIEPAVTGTTYTWELR
                     DLPFIEDEPNSPSVDTLAPRLAVSFFPAEGARSAMGPSFNSWAEVSRWLTSLHDPQAE
                     PDDAIATKARELTANAKTELEKIQAIGRYVQNIQYISIQIGLNRGGGMRPHKASEVFA
                     KSYGDCKDKATLMRAMLRAVKIAAYPVGIYSGDRAYVREEWPSPQQFNHCIIAVRVSD
                     ETKAPSIIEHPKLGRLLIFDATDDMTPVGDLPDHEQGSLALVIAGDDGALVRMPVTRP
                     EDNLWKREVEVGLSPEGAITASVRERLAGQSAVFARRVFKGLARPDFTKVVERWVSEG
                     ATGAKFTKIEPADSHAEGRFSLDVEFTADRYAQSMANRLLVFRPAVLSRADSVWLVEP
                     KRKHPVVLESEAFSETVRVKLPAGFDVDEVPDAVKVTSDFGTYTATYEVKDGHLLYTR
                     TLVQQAATIPAEKYDDVRRFFGQVRASEEAPVVLARK"
     gene            complement(7812..9686)
                     /locus_tag="VD968_09530"
     CDS             complement(7812..9686)
                     /locus_tag="VD968_09530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14667.1"
                     /translation="MKKLLIVAVAALACGQSAASQQKQGAAQAPAQQQQQQSPQQRPA
                     PQRQRLDLSDFGMQIAPDARLVVMMAALDAAGWDPTPAGERPSVFRELVRKDQAGLDP
                     ALRARLQDFYKRNALKDERATPADQAARYVSLAYTLGQPPSFEAPPRSDDLPPGVLDV
                     LDFVPLLREFYRQSGIDARLPSYLNSHRAAGDGMRRASDEMARFVLSYLSTRPETTIF
                     EQVRPAAQQGDKKKGEKRAAPVVRERQRRFVIVPDLLAAPGAINFRVVGDDYFAVVPA
                     GTDPRWSEVRRAYVQFVIDPLVLRFNRDVAARRADIKLLLDTERARRGGDITPDVFLS
                     VARSLVAAADARMDEVARLYVLQNETGELLKRAGSNQSARDAALRQSKEREASIKDST
                     VAQLAEAYERGAVLSFHFADELKELEGSGFDVAAFITPMLADFDPQRELKRPAEYAAA
                     VARAAEARRRAREARAAAASSPEPAASGPADERRAALLKSLADVDDLMRLKNYEEAEA
                     RLLALRDEHRDEPRVYFALGQVASLAAQEAFDEGLQAQRLDRALQHFRQALLFASPGT
                     DRALMVRAHMASGRILAHLERAEEAAKEFDAVMQLSEAADPVHQEALAAKKRLPGQKQ
                     "
     gene            complement(9779..10270)
                     /locus_tag="VD968_09535"
     CDS             complement(9779..10270)
                     /locus_tag="VD968_09535"
                     /inference="COORDINATES: protein motif:HMM:NF021363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2062 domain-containing protein"
                     /protein_id="HYE14668.1"
                     /translation="MLRGAFRRLLALDDPPERTALAFSVGVFIAFSPFLGLHTLAATA
                     LAFIFRFNKVAIYAGTFVNNPFLTLVPITLASYAAGAFVMGRPLGLPERGMALLAEPH
                     PLTASYWGELFGHFWDVLLPFAVGATILSFVCSLAAYPVTLHLLRAARRRREAARVRA
                     GGR"
     gene            complement(10353..10700)
                     /locus_tag="VD968_09540"
     CDS             complement(10353..10700)
                     /locus_tag="VD968_09540"
                     /inference="COORDINATES: protein motif:HMM:TIGR00377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HYE14669.1"
                     /translation="MAELNIRERQAGDVTILDLEGRITIGEGNVSLRGAIRRLIEEGK
                     KKVLLNLGGVSYMDSSGIGELVSSYTTIGREGGQLKLLKLTQKIRDLLGITKLLTVFD
                     TYDDEASALNSFK"
     gene            complement(10811..11224)
                     /locus_tag="VD968_09545"
     CDS             complement(10811..11224)
                     /locus_tag="VD968_09545"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE14670.1"
                     /translation="MTEESVELRIPSRVEAIDEAAAAVADAARRAGFAEDALFGIDLA
                     VREAVTNAVLHGNRRDESKEVEVGVSSAGAEMVVTVRDRGEGFDASQVADPTSEENLL
                     KSSGRGILFMRTFMDDVRWERPPGGGTLVRMTKKK"
     gene            11415..12761
                     /gene="aroA"
                     /locus_tag="VD968_09550"
     CDS             11415..12761
                     /gene="aroA"
                     /locus_tag="VD968_09550"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF012497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HYE14671.1"
                     /translation="MRIRPARRLRGRVRVPGDKSVSHRAAILAALARGASRVENFSTA
                     ADCASTLACLEGLGVGVRREGGGAVVISGAGRGPGRWAFSEPPRALDCGNSGTTMRLL
                     AGVLAAQPFSSVLAGDESLSRRPMRRVIEPLERMGARVSSVEGRAPLRIEGRRPLRAI
                     EFEPAVASAQVISCVLLAGLGAEGRTSVREPRAGGGAPAARDHTERMLRWLGAPVSVA
                     ARDGAARTVSIEGPATLAARDLWVPGDFSSAAFFIAAAALLPGSELEIEGVGLNPTRT
                     ALLGVLSRLGAGVTAENGAERCNEPVGNLFVKSPSVLAHEAGGALRLGGAEVARLIDE
                     LPLLAVVGALAEGGLEIRDAAELRVKESDRISAVVRNLRAMGAEVEERDDGLSVGGGA
                     RLKGARLSSFGDHRIAMAFAVAALAAEGETTIDGARECVSVSFPEFFSLLESVTER"
     gene            12758..13282
                     /locus_tag="VD968_09555"
     CDS             12758..13282
                     /locus_tag="VD968_09555"
                     /inference="COORDINATES: protein motif:HMM:NF013375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HYE14672.1"
                     /translation="MTDGGPPIIAIAGFMAAGKTTVARALARRLGRAWADLDEAVTKR
                     EGRTPARLIEEDGEAAFRDAETRALSDLLERGEASVIALGGGTFALARNRVLLAAHGC
                     VSVWLDAPFDLCWRRITEAGAAPRPLARDRAAARRLYDERLASYRLASLRVRVSAASS
                     PEATAAEVAGAVGA"
     gene            13362..>14822
                     /locus_tag="VD968_09560"
     CDS             13362..>14822
                     /locus_tag="VD968_09560"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF013319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HYE14673.1"
                     /translation="MAKEHADAKALRVAKELRNAHNWKHLTRWNGLGFYELHTEDTGE
                     VPVRLFFTPQLLNDAEEILYRQIVNATRFPGVRLVVITPDAHYGYGVPVGCVLVTDAD
                     SGAVAMGPVGYDIGCGMMSARSDVGAERATPEKRLEFNRAVMRRVDMGFGGKSKRLGR
                     LSDSEFQNLVRGGAEYYVEKYGATFDRSRAERHRIPVEDGWQIPWGGKGRPERGLEQL
                     GSLGGGNHFIELQRSEQTGTLFLQVHTGSRGFGHGLATNYFELAREEHPELMKDIDLG
                     YFTPESRHYRDYLNAVAAGGNYAILNRLVIFEQVSEAFREVFGEDLELIYEISHNLVQ
                     KEWHPDLGDVWVHRKGATRAFPAGHPFLKGTQWEGTGHPVLIPGSNKDWSYILRPLGG
                     AERSGFSVNHGAGRRLSRGEAGRTLSQRAIDDEYRQAGVLVNTDGRVPLDEAAPCYKP
                     SEEVVAAVVGAGLAEIEHRLWPLASLKGVDERKGGKR"
BASE COUNT         2349 a         5081 c         5121 g         2271 t
ORIGIN      
        1 cgcgtcgagc tctgcgcggc actcgcggca ggagggcagg tgcgcgccga gcgcgcgggc
       61 ctcctccgcg tcgagcgcgc ccgcggcttc gagcgccagc aactctttgt aatcttcgtg
      121 ccgcatctag accttaaaaa ctccccgccc cttagactcc ctgcgcgccg agcctgtcgc
      181 gcagcagctc gctcaatttt ctaagccccg ccctcgtcct cgtcttcacg gtgccaagcg
      241 gctgccccgt cctcgcggca atctccgact gcgacatgcc gtccaggtag gccagcagca
      301 gcgccctccg ttgctcttca ggcaactccg cgagagcgcg cctcactatc tcggcctgct
      361 cggagcgcgc ggccgcgtcg tccgccgtct ccgcggtcgc ggcttcgggc cgggcctctt
      421 cggcagagcg ctgcgccgcg cgctcgcgcg actcgacggc gcggagcctg tcaatggcgc
      481 ggctgcgcgc gagcgtgacg agccatgtga aggggcgccc gcgcgcggga tcgaactgac
      541 cggcctgccg ccagacctgt ataaagacct cctgcagaac gtcttcggcc tcggcgcggc
      601 tgcgtaatat acggagcagc agcccgagca ggatggggct gtaacggtcg tacagggcgg
      661 cgaacgccgc ctcgtcgccg cgcgagacgg ccacgagcag cgcggcgtcg gattcgtctt
      721 gctcgggtcg ggcagtcaaa acctttttcg cctcggtcgg gcgcgcggcg ccgcggcgcc
      781 ctcacactct aactacgcgg cgcgtgccgc gcgaggtttt ttggcgcgtg aaaaacaagg
      841 cccgcagggg cgccggacgg agcgaggggc gccgggctgt ttagtgagcc cggcgcccct
      901 ctcatgccgt cagcgccttc gccgcgcgcg cgtcgcgctc acgcgaccgt aatctcttcc
      961 gccaggtaaa cgtcctgtat ggcgttcagg agcgcgacgc cctcctgcat cgggcgctgg
     1021 aaagccttgc ggcccgagat gagccccatc ccgccgccgc gcttgttgat gacggccgtg
     1081 cggacggcct cggccatgtc gccctgcccc ttcgactcgc cgcccgagtt tataagcccg
     1141 cagcggccca tgtagcagtt cgccacctga tagcggacga ggtcaatggg gttgtctgag
     1201 gtgagctccg tgtaaatctt cgggttagtc ttgccgtagg agctttctat gttgagcgcg
     1261 ttgtagccgc cgttacgctc gggcagcttc tgcttgatga tgtcggcctg tatggtgacg
     1321 ccgaggtggt tggcctgccc cgtgaggtct gcggccgcgt gcatgtcgcc ttccttcgtc
     1381 ttgaacttcg ggttgcgcag gtagcaccaa aggatcgtag ccatcccgag ctcgtgcgcg
     1441 attgcgaacc cctcggcgat ctccgttatc tggcgcgttg actcctccga gccgaagtag
     1501 atcgtggcgc cgacggcgac ggcgcccatg tcgcgtgcct ggtcaacggc gccgaagagc
     1561 acctggtcga acctgttcgg gtaggtcagc agctcgttgt ggttgatctt gacgatgaag
     1621 ggaatcttgt gcgcgtactt gcgcgcgacc gagccgagca cgccgaaggt cgaggcgacg
     1681 gcgttgcagc cgccctcaat cgcaagtttg acgatgttct cagggtcgaa gtagagcggg
     1741 ttgggcgcga acgaggcgcc ggccgagtgc tctatgccct ggtcaacggg gaggattgag
     1801 aggtagcccg tgcccgcgag gcgcccgttg tcgaagagcg tctggagcga gcggagcacg
     1861 gaggggctgc ggtcagagtc ggcccagacg cggtcaacga agtcggggcc gggtgtctgc
     1921 aaaaggtctt tggagatctt cggcgcgctg aagtcgagca gggcgcgccc gtcgtcgccg
     1981 aggagttctt ctatgcgtgc gagggccgag ccctcgcgcc tcagttcggt agccacctct
     2041 ctaaatcctc ctgataaaaa attcgcccga gccgcttttt tagagtcaaa cttgggtggg
     2101 attatagcac gccggctcgg gacagcgagc gccgcgccgc gaccggctca gcgcgctagg
     2161 ctctcgtagc tcgccggggc gacgaggagg aggagcgcgc cgccgtccga gacgagctct
     2221 tcgtggacgc tgccgggcat ggagcagttg aagtcgccgg ccttcatcga gtaggggccg
     2281 gagcgcacgt cgccttcgag gacgaggcac tgctcgacgc cgaggtggcg gtgcgggcgt
     2341 atgcgcgagc cgggccgcat gcgcacgagc gtcgtcagcg tcccccgctc gcggtcggcg
     2401 aagagcagct tgtaggtgac gccctcgtcg tcggtctcgg cccactttcc ttcctcggcg
     2461 cgcaggacgt agaagccttc ggccgcgggc cgctcggccg cggtggccga gcacgactcg
     2521 gcgcccgcgc cgtcgcccct cggctcttcc gcggccagcg cgagcagtcg cgagcggacg
     2581 cccgcggggg gcgcgggcgc agcgggggcg gcgagggcca gcccctcgac tacctcgccg
     2641 tagccgcgaa gctccgcctc gcacgcttcg cagcccgcgg tcaggtgctc ctcgaacgcg
     2701 cgggcctcgc cctcttccaa agcgcccagc gcgtagaggg cggcctgccc cgccgcctct
     2761 tctcccgaca aggtgtgcat cagtttcaag ccctttcgtg aaccgccttg agcgtctcgc
     2821 gcaggcgcgc catccccaaa cgcgtccgcg tctttacggt gccgagcggc agtcccctcg
     2881 ccgccgcgat ctcgctgtgg ctcatccccg agtagtaggc aagctctatg acctcgcgct
     2941 gctcgggcgg cagcacgtcg agcgccgcgc gcacggccgc gcgcgtctcg cccgccgccg
     3001 cttcatcctc ggcgctcgcg ccgcccgccg cccgcagcga ggccgcttcg agcggcgcgc
     3061 tcagctcgcg ctcctggcgc gcgcgcctga gccggtcaat ggcgcggctg cgcgcgatgg
     3121 tgacgagcca tgccagaggg ctcccgcgcc gctcgctgta gccgtcggcc tgccgccaca
     3181 cctgcgcgta aacgtcgagc agaacctcct cggccgcccc cgcgtcggag aggattcgca
     3241 ggagcagtcc gtagatggcc cggctcgtcg agtcgtagag cgaggcgagc gcctgctggt
     3301 cgccggccgc gacgcagcgt atcagctcgg cctgccgcca cctcgccccc tcgcctgtca
     3361 aacgtgtcgg gccctcggtt gatgccacgc tagacaccat tcctttacga gactacgcta
     3421 tctttaccac caacggattc ttttgcacaa cagcccccgg cggcttgcct cgtacaggat
     3481 ttcgtcttaa aatccgcgac ttgacagccc cggcgcgggc ctcacccgtc gagcagttcc
     3541 gcccggccgc ggcgtcagcc tttagacggt tcgccctttt caatctgtca tgaccccgtc
     3601 cgccgacaga agcttttccc tctgagaggt ctaagtgatg aagcccccaa cccccttagc
     3661 gccccgccga ggagcagggt tcctgacgct cacgccactt ctaatcattt tcgccgccgc
     3721 cgcgccggcc ttcgcgcaga aggactggaa gcccgtcgag ccttcgcaac tctctatgtc
     3781 ggcgcccgtc gtcgagcgcg acgccgacgc cgaggccctg ttctgggagg tcagggtctc
     3841 gtacgagaac agcggcggcg agccggccac ggtcttgaac cactacgtcc gaatcaaaat
     3901 cttcaccgag cgcgggcgcg agtcgcagag caagattgac atctacgcgc cgaagataag
     3961 cgaccgcgag ataaggataa aggacatcgc ggggcggacg ataaagccgg acggcaccgt
     4021 cgtcgagctc aagaaggaag acatattcga gcgcgacgtg gtgaagatga gcggcctcaa
     4081 ggtgaaggcc aagtccttcg ccatgccggc cgtcgagccg ggctcgataa tcgagtaccg
     4141 ctggcgcgag gtgcgcaacg gcataagggg ctacgagcgc ttcgacttct cgcgcgacat
     4201 ccccgtccaa ctcgtgcgct acttcataaa gccctacggc gaggcgctcg ttgacgactc
     4261 cggcaggccc gtcggcctgc gcgcccagac cttccacggc gacatgacgc ccttcgtcaa
     4321 ggagagcggc tggcacagca cttcgatgac gaacgtcccg gccttccgcg aggagccgcg
     4381 catgccgccc gagtacgagg tgcgcccctg gatgctcgtc tattattcga gcgacgacaa
     4441 gccgacgccc gagaaggtct ggaaggctta cggcagggag ctatacgaag accacaagtc
     4501 gcagatgaag gtgagcgacg agataaagcg caccgcggcc gaagtcgtcg cgggcgccgc
     4561 gacggacgac gagaagctcg accgcctgtt cgccttcgtc cgctcgaagg tgaagaacgt
     4621 tgatgacgac gcctctggct tcacgcgcga gcaggtcgag aagatgaagg agaacaagaa
     4681 cccttccgac accctgaagc gcggcgtcgg cggctggcac gacattgaca tgctcttcgc
     4741 cgcgctcgca acggccgccg gcttcgacgc gcgcgtcgcc aaggtcacgg atcgcagcga
     4801 caccttcttc gacccgcggt tcccggacga ctacttcatg cggctcggct cggagaacat
     4861 cgccgtgcgc gtgggcgaca agtggcgctt cttcgacccc ggcacgacct acatcccgca
     4921 ggggatgctg cgctggcagg aggaggggca gctcgcgctc gtctccgacc cgaaggagcc
     4981 ggtcttcgtc cccgtgccgc agtccggccc agagaagtcc gtggagaagc gctgggccaa
     5041 gttcaagctc tcggccgacg gcacgctcga aggtgaagtt aagatcgagt acacgggcca
     5101 cctcgcgcac gacatgaagg agtcgtacga cgaagactcg ccggccgagc gcgaggaggc
     5161 gctcaaggag aagttcgcct cccgcatgtc cggcatagag ataacggacg tgaaggtcga
     5221 gaacgtctcc gacccgctca agcccttcac ctacaccttc cgcgcgcgcg tccccggcta
     5281 cgccgtcaag acgggcaagc gcctcctcat acagccggcc ttcttccaga aggggagcaa
     5341 cccgctcttc ccgaccgccg gccggcgcca ccacgtctat ttcaactacc cgtggtctga
     5401 ggaggactac gtcgagatgg aactgcccga gggctacgcg ctcgacaacc ccgagtcgcc
     5461 ggccccgttc ggcgcggggg cgttgagccg ctacgagccg aaggcgcagg tgacgaccga
     5521 cggacgcacg ctcatctacc gacgcaagtt cttcttcggc gggagcgttg acgccagcgg
     5581 cccggcccta ctcttcccga cgacctccta cgagcagctc aagcgctact tcgacgagct
     5641 gcacaggcag gacaaccaca cgctagcgct caagcagggc gccgcggccg ccgccacgac
     5701 cacgagcggc aacaagtaga gggattcaag caatgctccg acgccccatc tatttcgcga
     5761 cgctcctggg cgcgctcctc ctcctggccg cgccgcccga ggcgcgcgcc ggcgacgacg
     5821 cgcccgcgtg gctcaggcag gcggcggggg ccgcggcccc ggcctacgac aagaaggtgc
     5881 cggccgtagt gctccaccgc gagcgcaccg tcacggtcgg cgaggacggc cgcgtgagga
     5941 cgacgaccac ctacgccgtg cgcgtgctca cgcgcgaggg gcgcggggcc gccaccggcg
     6001 gcgaggtcta tgcgaccgac acgggcaagg tgctcgactt caaggcgtgg ctcatacgcg
     6061 cctccggcac cgtcaagaag tacggcaagg acgccgccgt tgacatggcg ctcgacgacg
     6121 acgacgttta caacgaggcg cgcgtgcgga ggatttccgc cgtcgaagac gttgacggcc
     6181 ccggcgacgt gttcggctac caggtcacga gcgaggagcg caccgtcttc acgcagagcg
     6241 actggaactt ccagtaccag ctcccgacgc tcgtctcgcg cttcaccatc gcgctccccg
     6301 cgggctggcg cgccgcgggc gtcgtcttca accgcccgaa aatcgagccc gccgtgacgg
     6361 ggacgaccta cacctgggag ctgcgcgacc tgcccttcat cgaggacgag ccgaacagcc
     6421 cctcggttga cacgctcgcg ccccggctcg ccgtcagctt cttccccgcc gagggggcgc
     6481 gcagcgcgat gggcccatcg ttcaactcgt gggcggaggt ctcgcgctgg ctcacctcgc
     6541 tgcacgaccc gcaggccgag cccgacgacg cgatagcgac gaaggcgcgc gagctgaccg
     6601 cgaacgccaa gaccgagctc gagaagattc aggccatcgg ccgctacgtg cagaacatcc
     6661 agtacatctc gatacagata gggctgaacc gcggcggagg catgcgcccg cacaaggcgt
     6721 ccgaggtctt cgccaagtcc tacggcgact gcaaggacaa ggcgacgctc atgcgcgcca
     6781 tgctcagggc cgtgaagatc gcggcctacc ccgtggggat ttactcggga gaccgcgcat
     6841 acgtgcgcga ggagtggccc tcgccacagc agttcaacca ctgcatcatc gccgtccgcg
     6901 tgagcgacga gacgaaggcc ccgagcataa tcgagcaccc gaagctcggc cgcctgctca
     6961 tcttcgacgc cacggacgac atgacgcccg tcggcgacct gcccgaccac gagcagggca
     7021 gcctcgccct cgtcatcgcg ggcgacgacg gcgcgctcgt gcgcatgccc gtcacgcgcc
     7081 ccgaggacaa cctctggaag cgcgaggtcg aggtcggcct ctcgcccgag ggcgccatca
     7141 ccgcctccgt gcgcgagcgc ctggcggggc agtcggccgt cttcgcgcgc cgggtgttca
     7201 aggggctcgc gcggcccgac ttcacgaagg tcgtcgagcg ctgggtgtcc gagggcgcca
     7261 cgggcgcgaa gttcaccaag atcgagccgg ccgacagcca cgccgagggg cgcttctcgc
     7321 tcgacgttga gttcacggcc gaccgctacg cgcagtcaat ggcgaaccgc ctgctcgtct
     7381 tcaggccggc cgtgctctcg cgcgccgact ccgtctggct ggtcgagccg aagcgcaagc
     7441 accccgtagt gctcgaatct gaagccttca gcgagaccgt ccgcgtgaag ctgcccgccg
     7501 gcttcgacgt tgacgaggtg ccggacgccg tcaaggtgac gtcggatttc ggcacctaca
     7561 cggcgaccta cgaggtcaag gacggccacc tgctctacac gcgcacgctc gtccagcagg
     7621 ccgccaccat ccccgccgag aagtacgacg acgtgcgccg cttcttcgga caggttcgcg
     7681 ccagcgaaga ggccccggtc gtcctcgccc gcaagtaggc gcggggacgg cagacgcttc
     7741 aaacactcgc cccgcaaaac agcgggcgcc gaagcccaga gacttcggcg cccgcttttc
     7801 tcgtcttgtc tttactgctt ctggccgggc aggcgcttct tggcggcgag ggcctcctgg
     7861 tggacggggt cggccgcctc gctcaactgc atgacggcgt cgaattcttt ggcggcctct
     7921 tcggcgcgct ccaggtgggc gagtatgcgg ccgcttgcca tgtgggcgcg caccataagg
     7981 gcgcggtcgg tgccgggcga ggcgaagagc agggcctgcc ggaagtgctg tagggcgcgg
     8041 tcgaggcgct gcgcctgaag cccctcgtcg aacgcctcct gcgccgcgag gctcgccacc
     8101 tgcccgagcg cgaaatagac gcgcggctcg tcgcggtgct cgtccctgag cgcgagcagg
     8161 cgcgcctcgg cctcctcgta gttcttgagc cgcatcaggt cgtcaacgtc ggcgagcgac
     8221 ttgaggagcg ccgcgcgccg ttcgtccgca ggccccgagg cggccggctc gggcgacgag
     8281 gcggccgcgg cccgagcctc gcgcgcgcgg cggcgcgcct ccgccgcgcg cgcgacggcc
     8341 gcagcgtact ccgcgggccg cttcaactcg cgctgcgggt cgaagtcggc gagcatgggc
     8401 gtgatgaagg cggccacgtc gaagccggag ccttccaact ccttcagttc gtcggcgaag
     8461 tggaaggaga ggacggcgcc gcgctcgtaa gcctcggcga gttgcgccac ggtcgagtct
     8521 tttatagacg cctcgcgctc cttcgactgc ctgagcgcgg cgtcgcgcgc cgactggttc
     8581 gagccagcgc gcttgagcag ctcgcccgtc tcgttctgca ggacgtagag gcgagccacc
     8641 tcgtccatgc gcgcgtcggc ggcggcgacg agcgagcgcg cgaccgacag gaacacgtcc
     8701 ggcgttatgt cgccgcccct gcgcgcgcgc tcggtgtcga gcagcagctt tatgtcggcg
     8761 cgccgggccg ccacgtccct gttgaagcgc agcaccagcg ggtctattac gaactgcacg
     8821 taggcgcggc gcacctcaga ccagcgcggg tctgtgccgg cggggacgac ggcgaagtag
     8881 tcgtcgccta cgacgcggaa gttaatcgcg ccgggcgcgg ccagaaggtc ggggacgatg
     8941 acgaagcggc gctggcgctc gcgcacaacg ggcgcggccc gtttctcgcc cttcttcttg
     9001 tcgccctgct gcgcggcggg ccgcacttgc tcgaatatcg tggtctcggg gcgcgtgctc
     9061 aggtaggaga ggacgaagcg cgccatctcg tcggaggcgc ggcgcatgcc gtcgcccgcg
     9121 gcgcggtggc tgttgaggta tgaggggagg cgggcgtcaa tgccggactg gcggtagaac
     9181 tcgcgcagga gcggcacgaa gtcgagcacg tcgagcacgc cgggcggcag gtcgtccgag
     9241 cgcggcggcg cctcgaacga gggcggctgc cccagcgtgt atgcgagcga gacgtagcgc
     9301 gcggcctggt cggcgggcgt ggcccgctcg tccttcagcg cgttgcgctt gtagaagtcc
     9361 tgaaggcgtg cgcgcagcgc ggggtcgagg ccggcctgat ccttcctgac cagttcgcgg
     9421 aagaccgagg ggcgctcgcc cgcgggcgtt gggtcccagc ccgcggcgtc gagcgcggcc
     9481 atcatcacta cgaggcgcgc gtccggcgct atctgcatgc cgaagtcgct gaggtctagg
     9541 cgctggcgct gcggcgcggg gcgctgttgg ggggactgct gctgttgctg ttgggccggg
     9601 gcctgcgccg ccccctgctt ctgctgcgac gcggccgact ggccgcacgc gagcgcggcg
     9661 actgcgacga ttaaaagctt cttcattacg aaccttctga aaaaatgaat gattgccggg
     9721 gaactcgtga gttagagatg ccggcgcccg cgggccggat gtccgccgcg cgggcctctc
     9781 atcgccctcc ggcgcgcacg cgggcggcct cacgcctgcg gcgggcggcg cgcaggaggt
     9841 gtagggtaac agggtacgcg gccagcgaac aaacgaagga gagtattgtg gcgccgacgg
     9901 cgaagggcag cagaacgtcc cagaaatgcc cgaagagctc gccccagtat gaggccgtca
     9961 gcgggtgcgg ctccgcgagg agcgccatgc cccgctcggg caggccgagg gggcggccca
    10021 tgacgaaggc gccggcggcg taggaggcca gcgtgatggg gacgagcgtc aggaaggggt
    10081 tgttgacgaa ggtgccggcg tagatagcga ccttgttgaa gcggaagatg aaggcgagcg
    10141 ccgtggccgc gagcgtgtgc aggccgagga agggcgagaa ggctatgaag acgccgacgg
    10201 agaaggcgag cgccgtccgc tccggcgggt cgtcgagggc gagcaggcgg cggaatgcac
    10261 cgcggagcat aagggcggct gcgggcggcg ggtgacgagt ttaaggcgac ataccgctcg
    10321 ccgcccgccg cccgccgcgg gtcgccgctt tcctacttga agctgttgag cgcgctggcc
    10381 tcgtcgtcgt acgtgtcgaa gacggtcagg agctttgtga tgccgagcag gtcgcgtatc
    10441 ttctgcgtga gcttgaggag cttgagctgc ccgccctcgc gaccgatggt cgtgtagctg
    10501 gagaccagct cgcctatgcc gctcgagtcc atgtagctga cgccgccgag gtttaagaga
    10561 accttcttct tgccctcctc gatgaggcgg cggatggcgc cgcgcaggga cacgttgccc
    10621 tcgccgatgg ttatcctgcc ctcgaggtcg aggatcgtca cgtcgccggc ctggcgctct
    10681 ctgatgttca gttcagccat tgcgggaagt ctccttggga aagtagtcgg tagtcagtag
    10741 tcagtagcct tcgtgaagag ggcgttgacg ctttaaaccc ggccgctcgg tagagacagc
    10801 tttctactga ctactttttc ttcgtcatcc tcaccagcgt gccgccgccg ggcggtcgct
    10861 cccagcgcac gtcgtccatg aaggttcgca tgaacaggat accacggccc gaggacttga
    10921 gcaggttctc ctcgctcgtg gggtctgcga cctgcgaggc gtcgaagccc tcgccgcgat
    10981 ccctcacggt tacgaccatc tcggcgcccg cgctcgagac cccgacctcg acctccttcg
    11041 actcgtcgcg gcggttgccg tgcagcacgg cgttcgtcac ggcctcgcgc acggccaggt
    11101 ctatgccgaa gagcgcgtcc tctgcgaagc cggcgcggcg cgcggcgtcg gcgacggccg
    11161 cggcggcctc gtctatggcc tcgacccggc tcgggattct cagttcgacg ctctcttcgg
    11221 tcactggctc aaagactgca acggcggcgc gccgcctcgt gcgaagacgc cgggcgcggc
    11281 cgcctgtcag ggcgctcatg aagctaaccg gaagcctgca cggtttaaca cgcccgccgc
    11341 gcgcgtgtca agaaagaggc cggagcgcgc ccagccgctt cccggccgcc gacgcgcgcg
    11401 cgtagaatcg ccgcatgcgt ataagaccgg cgcgccgcct gcgcgggcgc gtgagagtgc
    11461 cgggcgacaa atcggtctcg caccgcgcgg cgatactcgc cgccctcgcg cgcggggcgt
    11521 cgcgcgtcga gaacttctcc acggccgccg actgcgcctc cacgctcgcc tgcctcgaag
    11581 gcttaggcgt cggggttaga agggagggcg gcggcgccgt cgtcatcagt ggcgcggggc
    11641 gcggccccgg ccgctgggcc tttagcgagc cgccgcgcgc gctcgactgc ggcaactcgg
    11701 ggacgacgat gaggctgctg gcgggcgtgc tcgccgcgca gcccttctcg tccgtgctcg
    11761 ccggcgacga gtcgctgagc cgccgcccca tgcgccgcgt catcgagccg ctagagcgaa
    11821 tgggcgcgcg cgtctcctcc gtcgagggcc gcgcgccgct gcgcatcgag ggccggcgtc
    11881 cccttcgcgc catcgagttc gagccggccg tggcgagcgc gcaggtcatc tcctgcgtgc
    11941 tgctcgccgg gctcggggcc gaggggcgga cttccgtgcg cgagccgcgc gcgggcggag
    12001 gcgccccggc cgcgcgagac cacacggaga ggatgctgcg ctggctcggc gcgcccgtct
    12061 cggtcgccgc gcgcgacggg gccgcgcgca ccgtctcaat cgaggggccg gccacgctcg
    12121 ccgcgcgcga cctctgggtg ccgggcgatt tctcctccgc cgctttcttc atcgcggcgg
    12181 cggcgctcct gcccggctca gagcttgaga tagagggcgt gggcctgaac cccacgcgca
    12241 ccgcgctgct gggcgtgctc tcgcggttgg gcgcgggcgt gacggcggag aacggagccg
    12301 agcgctgcaa cgagcctgtc ggcaacctct tcgtcaaatc ccctagcgtg ctcgcgcacg
    12361 aggcgggcgg cgcgctacgg ctcggcggcg ccgaagtcgc gcgactgatt gacgagctgc
    12421 cgctcctggc ggtcgtcggc gcgctcgccg agggcggcct ggagattcgg gacgccgcgg
    12481 agcttcgcgt caaagagtca gaccgcatca gcgcggtcgt caggaacctg cgagcgatgg
    12541 gggcggaggt cgaggagcgc gatgacggcc tgagcgtcgg gggcggggcg aggcttaagg
    12601 gggcgcggct ctcttcgttc ggcgaccacc ggatagctat ggccttcgcc gtcgccgcgc
    12661 tcgcggccga aggcgagacg acgattgacg gcgcgcgaga gtgcgtctca gtctccttcc
    12721 ccgaattctt ttccctgctc gaatcggtga cggagagatg acagacggcg gccctcccat
    12781 catcgccatc gcgggcttca tggccgcggg caagacgacc gtggcgcgcg cactcgcacg
    12841 ccggctcggc cgcgcgtggg cagacctcga cgaggcggtg acaaagcgcg aggggcgcac
    12901 gcccgcgcgc ctcattgagg aagacggcga ggccgccttc cgcgacgcgg agacgcgcgc
    12961 cctgtcagac ctcttagagc gcggcgaggc gagcgtcatc gccctgggcg gcggcacgtt
    13021 cgcgctcgcg cgaaaccgcg tcctcctggc cgcgcacggc tgcgtctccg tatggctcga
    13081 cgcgcccttc gacctctgct ggcgaagaat cacggaggcc ggcgccgccc cgcgccccct
    13141 cgcccgcgac cgcgccgccg cgcgccgcct ctacgacgag aggctcgcct cctaccgcct
    13201 cgcctccctg cgcgtcagag tcagcgccgc gagcagcccc gaagcgactg cggccgaggt
    13261 cgccggagcc gtcggcgcgt gagcccccac aatttgccgc ggccggccgc gaggtgcaca
    13321 atccacaaaa atcaagacga cggaagtcgc gggggagggg gatggcgaaa gaacacgcgg
    13381 acgctaaggc gctcagggta gcgaaggagc tcaggaacgc ccacaactgg aaacacctca
    13441 cgcgctggaa cgggctaggc ttctacgagc tacataccga ggacacgggc gaagtgccgg
    13501 tgcgcctctt cttcacgccg cagctcttga acgacgccga ggagattctc taccggcaga
    13561 tagtcaacgc cacgcgcttc cccggcgtgc gcctcgtcgt catcacgccc gacgcccact
    13621 acggctacgg cgtccccgtc ggctgcgtcc tcgtcaccga cgccgactcc ggcgccgtcg
    13681 ctatgggccc cgtaggctac gacatcggct gcgggatgat gtcggcgcgc tctgacgtgg
    13741 gggcggagag ggctacgccg gagaagaggc tggagttcaa ccgggccgtg atgcggcgcg
    13801 ttgacatggg gttcgggggg aagagcaaga ggctgggcag gctctctgac tcggagttcc
    13861 agaacctcgt gcgcggcggg gccgagtatt acgtcgagaa gtacggcgcg acgttcgacc
    13921 gcagccgggc agagcgccac cgcatacccg tcgaggacgg ctggcagata ccgtggggcg
    13981 gtaagggcag gcccgagcgc gggctcgaac agttggggag cctcggcgga gggaatcact
    14041 tcatagagct tcagcgctct gagcagacgg ggactctgtt cctacaggtt cacacgggga
    14101 gccgcgggtt cgggcacggg ctggcgacga actacttcga gcttgcgcgc gaggagcacc
    14161 cggagctgat gaaggacata gacctcggct acttcacccc ggagtcgcgc cactaccggg
    14221 actacctgaa cgccgtcgcc gcgggcggca actacgccat actgaaccgc ctcgtcatct
    14281 tcgagcaggt gtcggaggcg ttccgtgaag tcttcggcga ggatcttgaa ctaatctacg
    14341 agataagcca caacctcgtg cagaaggagt ggcaccccga tctcggcgac gtgtgggttc
    14401 accgcaaggg cgcgacgcgc gccttcccgg cgggccaccc ttttctgaaa gggactcagt
    14461 gggaggggac gggccacccc gtgctcatac cgggcagcaa caaggactgg agctacatcc
    14521 tacggccgct cggcggcgcc gagcgcagcg gcttctccgt caaccacggc gcgggccgga
    14581 ggctttcgcg cggcgaggcg ggccgcacgc tctcgcagcg cgccatagac gacgagtaca
    14641 ggcaggccgg cgtactcgta aacactgacg gccgcgtgcc tctggacgag gccgcgccgt
    14701 gttacaagcc gtccgaagag gtggtcgcgg ccgtcgtcgg cgcgggactg gccgagatcg
    14761 agcacaggct ctggccgctc gcctcgctca agggcgtgga cgagcgtaaa gggggcaagc
    14821 gc
//
LOCUS       DASPKR010000352        11555 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1728631, whole genome shotgun sequence.
ACCESSION   DASPKR010000352 DASPKR010000000
VERSION     DASPKR010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11555)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11555
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1728631"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..681)
                     /locus_tag="VD968_09565"
     CDS             complement(<1..681)
                     /locus_tag="VD968_09565"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYE14674.1"
                     /translation="METTRDKVGTGLPRRSPAAGPERVPLREGEPGTLVEAVARALRK
                     HARPDTLNSKYGGEWRAVSSEELARRSRAIALGLYASGLRRGDRAAIISESSPEWVLV
                     DVGCQSAGVVDVPIYPTLAPNQARYIMDDSGSSVLFAQHREAYERVSGALAECAALRQ
                     VVLMTGEGGEEGNVITLAELERRGEALDAERPGLAEELAGAVEPDDLATIIYTSGTTG
                     EPKGVMLTH"
     gene            complement(681..1298)
                     /locus_tag="VD968_09570"
     CDS             complement(681..1298)
                     /locus_tag="VD968_09570"
                     /inference="COORDINATES: protein motif:HMM:NF019958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYE14675.1"
                     /translation="MRSARSLQAQRPAAGDKREAILRAATRVFARNGYFNSKVADIAR
                     QAGVADGTVYLYFKSKEEILRSIFDRNTSEAIREGRSELEKIADPREKLRRIARHHLE
                     RLGADRDLAVVFQVELRGSTKFMEEFSAAGLAEYLGLIRETFEEGQRAGVFRSELNAK
                     LVAKILFGALDEMATNWILSRRRYKLAPMADEVLELFFNGVSAAR"
     gene            complement(1401..1757)
                     /locus_tag="VD968_09575"
     CDS             complement(1401..1757)
                     /locus_tag="VD968_09575"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HYE14676.1"
                     /translation="MQSFDSRFSNPRRPEREGRLVAVGRVEDVPEGRGATVELAGGRE
                     LALFNVAGRFHAVENFCPHKGAPLADGALCGATVQCDWHGWRFDLQTGACLNRAADRI
                     ETYEVVVEDGWIKIRI"
     gene            1961..2785
                     /locus_tag="VD968_09580"
     CDS             1961..2785
                     /locus_tag="VD968_09580"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HYE14677.1"
                     /translation="MSRERGDWDDDFYAGEPRPRRGEGGRGGGYGRWDEAAGGRYEYD
                     ERDVARGGRPYGLRNDYDGYVSGRGDYYRDEYYTGRPPAERRDEERGREYYERPRRGA
                     SRSHVRCRDIMTRDVTVASRSTTLDEVARLMRDEDTGVIPVVEPGDSPSDSVTESYRV
                     PARITSNGRLVGLITDRDIVVRALAEGRDARSVTAEEIMTTDIHTAHPNDRVIDAIRK
                     MGDKQVRRIPVVDREGNLRGIISMADVALETEADRELAEALEEISSGASFWNRIFG"
     gene            2817..3188
                     /locus_tag="VD968_09585"
     CDS             2817..3188
                     /locus_tag="VD968_09585"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HYE14678.1"
                     /translation="MAESIERYLRMLPRAHGIRCAEHFWNPAADVYKTREGWLVKVEL
                     AGVSPDELEVTVEGNTLLVTGIRRDEVFSESVFCHQLEITYSRFERGIRFPCPIEGAS
                     VETRYKDGLLLIRLRSAEECD"
     gene            3242..5863
                     /gene="lon"
                     /locus_tag="VD968_09590"
     CDS             3242..5863
                     /gene="lon"
                     /locus_tag="VD968_09590"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: protein motif:HMM:TIGR00763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HYE14679.1"
                     /translation="MAEETRTDDDAGGGDSRTPHEPAEQQEQQRPDEQQGALETSRPE
                     GAPAAGREGGGAAPGGGRGEGEVFEIAVLPLQQTTLFPGTVVPLAAGRPRSVAAVEAA
                     LATEEKLLACVTVREGKSSPEAEATPPGDLYEVGTLVMVKRMMRGPEGLQLIVHGTER
                     VRIVKWSQTDPHLRARALILPAPGARDPQTVEALLRNVQTLIQRALAMLPEVPAEIRN
                     AVLGTNDPVQLAYFLASILNLGVEQEQQMLEADTADDLLQIAYSRLTRELEIMEIRSR
                     IASEAQSEMTKAQRDYVLRQQMKAIQKELGEDEGGERAEAEMLRERLDAADLPEDVRK
                     EAERELRRLERLPAAAPDYHVIRTYLEYVLELPWNKSSEDKLDIQEARRILDEDHYGL
                     EEVKERILEFLAVVKLRRDSKSPILCFAGPPGVGKTSLGMSIARALGRQFERLSLGGM
                     RDEAELRGHRRTYIGAMPGRIIQALRRAGVNNPVMMLDEIDKLGADFRGDPASALLEI
                     LDPQQNHTFRDHYLDLPFDLSKVFFIATANQLAPIPPPLRDRMEIIGLAGYSDQEKLH
                     IARQYLVPRQTRENGLQEGQLEITDDALMHIAARYTREAGVRQLERTVGRVARKAALR
                     IAQGEAERVRVDVADIKELLGAPRFYPEEARKEMPAGVATGMAWTETGGQLLFIEATL
                     LPGSSGLTLTGQLGEVMQESARAARSYLWSHAAEFGIDPQMFKNYGVHVHVPAGAIPK
                     DGPSAGVAITSAFASLMTGRRVRNDTAMTGEITLSGLVFPVGGIKEKVLAAHRAGLRR
                     VVLPARNEPDTEDIPEDVRRELEFVHVGTVGEALDATLEKLVSQPPPPAAPQSEESQA
                     APSAARPEPEPVRARGR"
     gene            5909..7252
                     /locus_tag="VD968_09595"
     CDS             5909..7252
                     /locus_tag="VD968_09595"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HYE14680.1"
                     /translation="MKAIPLLISTALATLLVGAGSAHAATGGGDAHGLDPFVLFSVAL
                     MLLVAKLGGELFMKLGQPEVLGELGGGIAIGALSLFGVGWVNDLRADAVVAALAEIGV
                     IILLFEVGLESNLREMMEVGWSSLLVAVLGVIAPFVLGWGVALLFLPDAPTLTHVFVG
                     ATLCATSVGITARVLRDLGRLKDRESRIVLGAAVIDDVLGLLILAVVVGSIRAADAGR
                     SLALSDVALIALKSVAFLAGALLVGQLLVPRLFRGAGRLKSRGVLVAFAVAFCFLLSW
                     VAARVGLAPIIGAFAAGLVLDEVHFEAFIERGERRIDELLAPVSALLVPVFFVLMGLK
                     VDLSVFARAEVLGFAAVLTAAAIAGKQLCSLGVVERGSNRLAVGLGMIPRGEVGLIFA
                     GIGAALTLPAPGGGRAQVVDAATFAAVVIMVVVTTLVTPPALKWAMGRRRGGAAA"
     gene            7282..7584
                     /locus_tag="VD968_09600"
     CDS             7282..7584
                     /locus_tag="VD968_09600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14681.1"
                     /translation="MVSRKTQSRAGAPERRRGQQMGDERSRPDKSIEEKRETPAARGR
                     RKAANKFFADESFQNVASDGEAPRDNTPSIPAAVPTGTKLGESGGEREFKQRQKKK"
     gene            complement(7723..7905)
                     /locus_tag="VD968_09605"
     CDS             complement(7723..7905)
                     /locus_tag="VD968_09605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14682.1"
                     /translation="MLKLKEVKFNIEVFAASFGFRKGAAKKAVKPGVCRVANLSPYRN
                     MIATKGGQPARIILLS"
     gene            complement(7941..9527)
                     /locus_tag="VD968_09610"
     CDS             complement(7941..9527)
                     /locus_tag="VD968_09610"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003953 - NAD+ nucleosidase activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="toll/interleukin-1 receptor domain-containing
                     protein"
                     /protein_id="HYE14683.1"
                     /translation="MTTAASEGGTAGAAACAPRRGRRRVFISYRRADGAGHADRLYDS
                     LRAHFGHDRVFMDIDGILAGEDFVERIRRELESCLAVVVVIGRNWLRPAGGGQGQDEA
                     QPDYVRMEVGLALALGARTIPVLVNGVQMPLRSELPDDLKPLAQLNAIELNRAHFEAA
                     VNRVIAAIEPDRRWWRGRLTLAAAAALALAAALFVQYRLAYGPQRVSLTPASPLSSVA
                     AHLGHDELLIERPQTDSDEGLLLAHYGREGEFIDINFERARLGGETLRRLALRRPPDA
                     APPPHDAARLTFETLPPEAPPAGPRPGGQTCRTSFEIHAAEAGLPPSALRLYQTEAAG
                     GERARRFGLKAAGGDLRFRVETVPPPDAAREALGCRKRLGAGDVFEHLFSGLSTVYAV
                     AEDGGGVNLSFNVASLKEGAAGLFPPFEMVAAAQPGGPAPLRAGAVHLRPLSGDTKAP
                     ATFSLTADGQPLSIDNLEVGPDLIRLRVSGLAVVEDRDGNHFKLRDRLALKSRAFALF
                     ALLDLALVLLLVWLLLGARR"
     gene            complement(9524..10354)
                     /locus_tag="VD968_09615"
     CDS             complement(9524..10354)
                     /locus_tag="VD968_09615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14684.1"
                     /translation="MLLLRHFSLKTLAALFLVVFPVISAAPVSPPGAAQTGGRGAAEA
                     ARESSEAERLSREGPQFPARLDPSNFTVKAFVKGGWPIYIAYELRRPGFVTLQINFVN
                     FPDCPPYFHTFGGPRGGMFTLSERYTDGRVMVGTFTVKATSKEGGGGRRVPLRLFAIG
                     AGPQAVGSSGFDRVSFQPDLVLPRRGQQANYSFHAIRDFPLVTADIYRDGDMELVARK
                     EHPGGVRRNQSAGGVWDGKARGSPSIGLHTLLVRGWRTLGEGGDWMATSSNPQVVLVR
                     "
     gene            complement(10599..>11555)
                     /locus_tag="VD968_09620"
     CDS             complement(10599..>11555)
                     /locus_tag="VD968_09620"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HYE14685.1"
                     /translation="PGCGDYAILNNVQKVMPELGIPREKIVFVSGIGCSSRFPYYMNT
                     YGFHSIHGRAPAIATGIKAANPELSVWVITGDGDALSIGGNHFMHAIRRNLDLNYVLF
                     NNRIYGLTKGQYSPTSEFGKKTKSTPMGVIDYPVNPLSLAIASEATFVARSIDIDVKH
                     LGSVVDAAARHKGISFVEVYQNCNIFNDGAFDSFAERTARPDNVLYLEHGKPMVFGKN
                     RDRGIRMSGTLPEVIHLGSETGLNENDCLVHDAHEKDPSVAFMLARMEYPDFPQPVGV
                     FRDVQRDTYEDLMRQQIEAAVERQGRGRLEKLIHSGDMWVVD"
BASE COUNT         1809 a         3853 c         4100 g         1793 t
ORIGIN      
        1 gtgcgtgagc atcacgcctt tgggctcgcc cgtcgtcccc gaggtgtaga ttatcgtcgc
       61 gaggtcgtcg ggctcgaccg cgccggcaag ctcttccgcg aggccgggcc tctccgcgtc
      121 gagcgcctcg ccgcgcctct caagctccgc gagcgtgatg acgttccctt cttcgccgcc
      181 ctcgcccgtc atcaaaacga cctgcctgag cgcggcgcac tccgcgaggg cgccgctgac
      241 gcgctcgtaa gcctcgcggt gctgcgcgaa gaggactgac gagcccgagt cgtccatgat
      301 gtagcgggcc tggttcggcg cgagcgtcgg gtagatggga acgtccacca cccctgccga
      361 ctggcagccc acgtccacga gcacccactc gggcgagctt tcagagatga tggccgcgcg
      421 gtcgccgcgc cgcaggcccg aagcgtagag gccgagggcg attgcacgcg agcggcgcgc
      481 taactcttcc gaagagacgg cccgccactc gccgccgtac ttgctgttga gcgtgtcggg
      541 gcgcgcgtgc ttgcgcagcg ccctcgcgac cgcctcgacc agcgtgccgg gctcgccctc
      601 gcgcagaggc acgcgctcgg ggcctgcggc cggcgacctg cgcggcaacc cggtcccgac
      661 tttgtcccgc gtcgtctcca tcatcgcgcg gcgctcaccc cgttgaagaa gagttccaac
      721 acctcgtcgg ccatcggcgc cagcttgtag cgccgcctcg acagaatcca gttagtagcc
      781 atctcgtcga gcgcgccgaa gagaatcttg gcgacgagct tggcgttaag ctcactgcgg
      841 aagacgcccg cgcgctgccc ctcctcgaag gtctcgcgta tgaggccgag gtactccgcc
      901 agccccgcgg ccgagaactc ctccatgaac ttagtcgagc cgcgcagctc cacctggaaa
      961 accacggcga ggtctcggtc ggcgccgagc cgctcaaggt ggtggcgcgc gatgcgccgg
     1021 agcttctcgc gcgggtcggc tatcttctca agctcgctcc ggccctcgcg tatggcctcg
     1081 gaggtgttgc ggtcgaagat ggagcgcaga atctcttcct tgctcttgaa gtagagatag
     1141 accgtgccgt cggcgacgcc ggcctggcgc gcgatgtcgg ccaccttcga gttgaagtag
     1201 ccgttacggg cgaagacgcg tgtggcggcg cgcaggatgg cctcgcgctt gtcgcccgcg
     1261 gcggggcgct gtgcctgtag ggaacgtgct gagcgcatca gtgcaaaggc ttccgcggct
     1321 cgggcttcac gaggcgcaag ctgaatggcc gttcattcag ttttaccaca aaggcgcgga
     1381 ggcgcgaaag ctcgcccgcg tcagattctg attttgatcc agccgtcctc gacgactacc
     1441 tcgtaggtct ctatccggtc ggcggcgcgg ttgaggcacg cgccggtctg taggtcgaag
     1501 cgccagccgt gccagtcgca ctgtacggtc gcgccgcaga gcgccccgtc ggcgagcggc
     1561 gcgcccttgt gcgggcagaa gttttcgacg gcgtggaagc ggcccgcgac gttgaagagc
     1621 gccagttccc tcccgcccgc gagctcgacg gtcgcgcccc ggccctcggg tacgtcctcg
     1681 acgcggccca cggcgacgag cctgccctcg cgctcgggcc gcctcgggtt cgagaatctt
     1741 gagtcgaatg actgcatcgc tgtcgaaatc gtaacacacg ccgcgcgggt tttccgcgcc
     1801 gcgcctgccg ctaatagctg cctctctggc aatctcggcc gaagcgagta taattggcgc
     1861 actgttccct ttgacgaaag ttgaagccgt tcgcacgagg cgcgcaagag agttcaagcg
     1921 cgcggtggtg tgccgggcga agggctcgcg ggaggttctt atgtcgagag agcgcggcga
     1981 ctgggacgac gatttttacg ccggcgagcc gcggccgcgt cgcggtgagg gcggccgcgg
     2041 gggcggctac gggcgctggg acgaggccgc gggggggcgc tacgagtacg acgagcgcga
     2101 cgtggcgcgc ggcggccgcc cctacgggct gaggaacgac tacgacggct acgtctccgg
     2161 gcgcggcgac tactaccgcg acgagtacta cacgggccgg ccgcccgcgg agcggcgcga
     2221 cgaagagcgc ggccgcgagt attacgagcg gccgcggcgc ggcgcctcgc gctcgcacgt
     2281 gcgctgccgc gacataatga cgcgcgacgt gacggtggcc tcgcgctcga cgacgctcga
     2341 cgaggtcgcg cgcctgatgc gcgacgagga cacgggggtc atccccgtcg tcgagccggg
     2401 cgactcgccc tctgactctg taacggaatc ctaccgcgtg cccgcgcgca ttacgagcaa
     2461 cggccgcctc gtcgggctca tcaccgaccg cgacatcgtc gtgcgcgcgc tcgccgaggg
     2521 gcgcgacgcg cgctcggtca cggccgaaga gataatgacg accgacatac acaccgcaca
     2581 ccctaacgac cgcgtcattg acgcgatacg caagatgggc gacaagcagg tgcgccgcat
     2641 ccccgtcgtt gaccgcgagg ggaatctgcg cggcatcatc tcgatggcgg acgtcgcgct
     2701 cgaaacggag gccgaccgcg agttggccga ggccctcgaa gagatttcga gcggcgcctc
     2761 cttctggaac agaatcttcg gataaggcag gcgcgggggc gcccgacacc ctttctatgg
     2821 ccgagtcaat cgaacgttac ctgcggatgc tgccgagggc gcacggcatc aggtgcgccg
     2881 agcacttctg gaacccggcc gccgacgttt acaagacgcg cgagggctgg ttagtgaagg
     2941 tcgagctggc cggcgtctcg cccgacgagc tggaggtgac cgtcgagggg aacaccctgc
     3001 tagttacggg catacggcgc gacgaagtct tcagcgagtc cgtcttctgc caccagttgg
     3061 agattaccta cagccgcttc gagcgcggca tacgcttccc ctgccccatc gagggcgctt
     3121 ccgtcgagac ccgctacaag gacgggctgc tcttaatccg cctgcggagc gcggaggagt
     3181 gcgactgaaa agtcattctg cctcgcccgc ccggaaaccc aaacgaggac aaccaagacg
     3241 catggccgaa gagacgagga ctgacgacga cgcgggcggc ggcgattcgc gcacgccgca
     3301 cgagccggcc gagcagcagg agcagcagcg acccgatgag caacagggcg cgctcgagac
     3361 gtcgcgcccc gaaggggcgc ccgccgcggg ccgcgagggc gggggcgcgg cgcccggcgg
     3421 cgggaggggt gagggcgagg tcttcgagat tgccgtgctg ccgttgcagc agacgacgct
     3481 cttccccggg acggtcgtcc cgctcgcggc cgggcgcccg cgctcggtcg cggcagtcga
     3541 ggccgcgctc gccacggagg agaagctcct ggcgtgcgtc accgtccgtg agggcaagtc
     3601 atcgcccgag gcggaggcca cgccgcccgg agacctctac gaagtcggca cgctcgtcat
     3661 ggtcaagcgc atgatgcgcg gccccgaggg cttgcagcta atagtccacg gcaccgagcg
     3721 cgtgagaata gtcaagtggt cgcagaccga cccgcacctg cgcgcccgcg ccctcatact
     3781 ccccgcgccg ggggccagag acccgcagac ggtcgaggcg ctactgcgca acgtgcagac
     3841 gctcatacag cgcgcgctcg cgatgctgcc cgaggtgccg gccgagatac gcaacgcagt
     3901 cctcggcacg aacgaccccg tgcagctcgc atacttcctc gcctccattc tcaacctcgg
     3961 cgtcgagcag gagcagcaga tgctcgaggc cgacacggcc gacgacctcc tccagatcgc
     4021 ctacagccgg ctcacgcgcg agttagagat aatggagatt cgctcgcgca tcgccagcga
     4081 ggcgcagagc gagatgacga aggcgcagcg cgactacgtc ctgcgccagc agatgaaggc
     4141 catacagaag gagctgggcg aggacgaggg cggcgagcgc gccgaggccg agatgctccg
     4201 cgagcgcctc gacgccgcag acctgcccga ggacgtgcgc aaggaggccg agcgcgagct
     4261 gagacgttta gagcgcctgc ccgcggccgc gcccgactac cacgtcatac gcacctacct
     4321 cgaatacgtc ctggagcttc cgtggaacaa gtcctccgaa gacaagctcg acattcagga
     4381 ggcgcgccgc atactcgacg aggatcacta cgggctcgaa gaagttaagg agcgcatact
     4441 tgagttcctc gccgtcgtca aactccgccg cgactcgaag agcccgatac tctgcttcgc
     4501 ggggccgccg ggcgtgggca agaccagcct gggcatgtcc atcgcgcggg cgctcggccg
     4561 ccagttcgag cgcctgtctt taggcggcat gcgcgacgag gccgagctcc gcggccaccg
     4621 ccgcacatac atcggcgcca tgcccggccg catcatccag gccctcaggc gcgcgggggt
     4681 gaacaacccc gtgatgatgc tcgacgagat tgacaagctc ggcgcggact tccgcggcga
     4741 cccggcctcg gcgctgctcg aaatcctcga cccgcagcag aaccacacgt tccgcgacca
     4801 ctacctcgac ctccccttcg atttgtcgaa ggtcttcttc atcgcgacgg ccaaccagct
     4861 cgcgcccatc ccgccgccct tgcgcgaccg catggagata atcgggctcg ccggctacag
     4921 cgaccaggag aagctgcaca tcgcccgcca gtacctcgtc ccgcggcaga cgcgcgagaa
     4981 cggcttgcag gaggggcaac tggaaatcac cgacgacgcg ctcatgcaca tcgccgcgcg
     5041 ctacacgcgc gaggccggcg tgcggcagtt ggagcgcacg gtgggcagag tcgcgcgcaa
     5101 ggcggcgctg cgcatcgcgc agggcgaggc cgagcgcgtg cgcgttgacg tcgcggacat
     5161 aaaggagctg ctcggcgcgc cgcgcttcta ccccgaggag gcgcgcaagg agatgccggc
     5221 gggcgtggct acggggatgg cgtggacgga gacgggcggc cagctactct tcatcgaggc
     5281 gacgctcctg cccggaagct cggggctgac tctcacaggc cagctcggcg aggtcatgca
     5341 ggagtccgcg cgcgccgcgc gctcttacct gtggtcgcac gccgcggagt tcggcataga
     5401 cccgcagatg ttcaagaact acggcgtgca cgtccacgtc cccgcgggcg ccataccgaa
     5461 ggacggccct tcggccggcg tcgcgataac gtccgccttc gcgtcgctga tgacggggcg
     5521 gcgcgtgcgt aacgacacgg cgatgacggg cgagataact ctgtcggggc tggtcttccc
     5581 cgtcggcggc atcaaggaga aggtgctcgc cgctcaccgc gctggcctgc gccgcgtagt
     5641 cctgcccgcc cggaacgagc ccgacaccga agacattccc gaggacgtta ggcgcgagct
     5701 ggagttcgtc catgtcggga cggtgggcga ggcgctcgac gcgacgctgg aaaagcttgt
     5761 ctcgcagcct ccgccgcccg ccgcgccgca gtcggaggag tcgcaggcgg cgccgtccgc
     5821 cgcgaggccc gagcccgagc cggtgcgcgc gcgcgggcgc tgaacggcga cgccagcggc
     5881 actgacgcgc cgccacgatt cgcgctgaat gaaggccatc cccctgctca tctcgaccgc
     5941 gctcgcgacg ctgctggtcg gcgcgggatc ggcgcacgct gccactggtg gcggggacgc
     6001 gcacgggctc gacccgttcg tgctcttctc ggtcgcgctg atgcttctgg tggcgaagct
     6061 agggggcgag cttttcatga agctcggtca gcccgaggtg ctcggcgagc tgggcggcgg
     6121 catcgcgata ggcgcgctct cgctcttcgg cgtcggctgg gttaacgacc tgcgcgccga
     6181 cgccgtcgtc gcggcgctcg ccgagatcgg cgtcatcatc ctgctcttcg aggtcgggct
     6241 ggagtcgaac ctgcgggaga tgatggaggt cggctggtct tcgctgctgg tggcggtgct
     6301 gggcgtcatc gcccctttcg tgctcggctg gggcgtggcc ctcctcttcc tgccggacgc
     6361 gccgacgctc acccacgtct tcgtcggcgc gacgctctgc gcgacgagtg tggggattac
     6421 ggcgcgcgtg ctgcgcgacc tgggccgttt gaaggatcgc gagtcgcgca tcgtgctcgg
     6481 cgcggccgtc atagacgacg tgctcgggct cctgattctg gccgtcgtcg tcggctcgat
     6541 ccgcgcggcc gacgcggggc gctcgctcgc gctctcggac gtggcgctga tagcgctgaa
     6601 gtccgtcgcc ttccttgcgg gcgcgctgct cgtgggccag ctcctggtgc cgcggctgtt
     6661 ccgaggcgcg ggccgtttga agagccgcgg cgtgctcgtc gcgttcgccg tggccttctg
     6721 ctttttgctc tcgtgggtgg cggcgcgcgt cgggctcgcg cccatcatcg gcgccttcgc
     6781 ggccgggctc gtcttggacg aggttcactt cgaggcgttc atagagcgcg gcgagcggcg
     6841 catagacgag ctgctcgcgc ccgtcagcgc cctcctcgtc cccgtcttct tcgtgctgat
     6901 ggggctcaag gttgacctga gcgtgttcgc gcgcgccgag gtgctcggct tcgcggcggt
     6961 gctcacggcc gcggctattg cgggcaagca gctctgctcg ctcggcgtgg tcgagcgcgg
     7021 gtcgaaccgc ctcgccgtcg gcctcggcat gatcccgcgc ggcgaggtcg ggctgatatt
     7081 cgccggcatc ggcgcggcgt taacgctccc ggcgcccggc ggcgggcgcg cgcaggtcgt
     7141 tgacgcggcc acgttcgccg ccgtcgtcat catggtcgta gtgactacgc ttgtgacgcc
     7201 tcccgcgctc aagtgggcga tggggaggag gcgtggcggg gcggccgctt gagtctttat
     7261 aaacggacgg ggaggtttcg gatggtcagc aggaagacgc agagcagggc gggcgcgcca
     7321 gagcggcgca ggggccagca gatgggcgac gagcgcagcc ggcccgataa gtccatcgag
     7381 gagaagcgcg agactcccgc cgcgcgcggc cgccgcaagg cggcgaacaa gttcttcgcc
     7441 gacgagtcgt tccagaacgt ggcgagcgac ggcgaggcgc cgcgcgacaa cacgccttca
     7501 atcccggccg ccgtccccac ggggacgaag ctcggcgagt cgggcggcga gcgcgagttc
     7561 aagcagagac agaaaaagaa atagccgcgg caatcagcgt ctgccttagc tgatagccga
     7621 cggccaaaaa agaaaggcgc ccggcccccc catggcctga cgccttacgg ccacttgcgt
     7681 ggcctgcccc aaagtttcac tcgttctcag aaggaacgcc cgttaactga gtaagatgat
     7741 acgggccggc tggccccctt tggttgcaat catgttgcga tagggtgaaa ggttcgcgac
     7801 acggcaaacg cccggtttta cagccttttt agccgctcct ttgcgaaagc cgaaggacgc
     7861 cgcgaagact tcgatgttaa acttcacctc cttgagcttc agcatggtca tcctcaagat
     7921 cggggtaaga gccgggcgtt ttagcggcgg gcgccgagga ggagccagac gagcaggagg
     7981 acgagcgcga ggtcgagcag ggcgaagagc gcgaaggcac gcgatttgag ggcgagccgg
     8041 tcgcggagct tgaagtggtt gccgtctctg tcctccacga cggcgaggcc ggagacgcgg
     8101 agccggatca ggtcggggcc gacttcgagg ttgtctatgg agagcggctg gccgtcggcg
     8161 gtgaggctaa aggtcgcggg cgctttcgtg tcgccgctga gcggcctcaa gtggactgcg
     8221 cctgcgcgca ggggcgcggg gccgcccggc tgcgcggcgg cgaccatctc gaacgggggg
     8281 aagaggccgg ccgccccctc cttcagcgag gcgacgttga agctcaggtt cacgccgccg
     8341 ccgtcttcag cgaccgcata gacggtggac aggccgctga agaggtgctc gaacacgtcg
     8401 cccgcgccca gtcgcttgcg gcacccgagg gcctcgcgcg cggcgtcggg cggtggcacg
     8461 gtctctacgc ggaagcgcag gtcgccgccg gccgccttca ggccgaagcg gcgtgcgcgc
     8521 tcgccgcccg cggcctccgt ctggtagagg cgcagcgccg agggcggcaa gcccgcctcc
     8581 gcggcatgaa tctcgaacga cgtgcggcag gtttgtccgc cgggtcgcgg gccggcgggc
     8641 ggcgcctccg gcggaagcgt ctcgaaggtc aggcgcgccg cgtcgtgcgg aggcggcgcc
     8701 gcgtcgggcg ggcggcgcag cgcgagccgc ctgagcgtct cgccgccgag ccgcgcgcgc
     8761 tcgaaattga tgtctatgaa ctcgccttca cggccgtagt gcgcgagcag aaggccctcg
     8821 tcggagtcgg tctggggccg ctcgattagg agctcgtcgt ggccgaggtg cgcggcgacc
     8881 gacgagagcg ggctagcggg cgtgaggctg acgcgctgcg ggccgtaggc cagccggtac
     8941 tgcacgaaga gcgcggcggc gagggcgagc gccgcggcgg cggcgagcgt gagccggccg
     9001 cgccaccagc gcctgtccgg ctcgatggct gctatcaccc ggttgacggc ggcttcgaag
     9061 tgggcgcggt tgagctcgat ggcgttgagc tgcgcgagcg gcttgaggtc gtccggcagc
     9121 tcactcctga gcggcatctg cacgccgttg acgagcacgg ggatggttct ggcgccgagc
     9181 gccagcgcca ggcccacctc catcctgacg tagtccggct gcgcctcgtc ctgcccctgc
     9241 ccgccgcccg caggccgcag ccagttcctg ccgatgacta cgacgacggc caagcacgac
     9301 tccagctcgc ggcggattct ctctacgaag tcctcccccg cgaggatgcc gtcaatgtcc
     9361 atgaagacgc ggtcgtggcc gaagtgggcg cggaggctgt cgtagaggcg gtcggcgtgg
     9421 ccggcgccgt cggcccgccg gtagctgatg aagactctgc ggcggccgcg ccggggcgcg
     9481 cacgccgcgg ccccggcagt ccctccttca gacgccgctg tcgtcatcgg actagcacca
     9541 cctgcgggtt tgaggaggtc gccatccaat cgccgccctc cccgagcgtg cgccaaccgc
     9601 gcacgagcag cgtgtggagg ccgattgacg gcgagccgcg cgccttgccg tcccagacgc
     9661 cgcctgcgct ctggtttcgc ctgacgccgc ccgggtgctc cttgcgcgcg acgagctcca
     9721 tgtcgccgtc gcggtagatg tcggccgtga ccagcgggaa gtcgcgtatg gcgtggaagc
     9781 tgtagttggc ctgctggccc ctgcgcggga ggactaagtc gggctggaag cttaccctgt
     9841 cgaagcccga agagcccacg gcctgtgggc cggcgccgat ggcgaagagt cgaagcggga
     9901 cgcgccgccc cccgcccccc tccttgctcg tggccttgac ggtgaaggtg ccgaccatca
     9961 cccgcccgtc ggtgtatctc tccgacagcg tgaacattcc cccgcgcggc ccgccgaagg
    10021 tgtggaagta gggcgggcag tccgggaagt tgacgaagtt gatctggagc gtgacgaagc
    10081 cgggccgcct cagttcgtag gcgatgtaga tgggccagcc gcctttgacg aaagccttca
    10141 cggtgaagtt gctcgggtcg agccgcgcgg ggaactgcgg cccctcgcgc gagagcctct
    10201 cggcctctga ggattcgcgg gccgcctcgg cggccccgcg gccgccggtc tgcgccgcgc
    10261 cgggcggcga gacgggcgcc gcggagataa cggggaagac gacgaggaag agagccgcga
    10321 gagttttcaa cgagaagtga cgcaagagaa gcacctcctt gccgggagcc gtgaagcgcg
    10381 cgaggcgggg cgggagtcgg agagcgcgcc gggcagggcg cgtgacgggt ggaaagatcg
    10441 cgggcgccgc gcatattaac acaaaaccgc gccgggccga cgcctctaat tcatgatgcg
    10501 ggcatgggcc aaaacatttc gccggcgccg gcaacgaaaa cgccgcgccc tttgttcggg
    10561 gcgcggcgtt catcacttcc cgtctttgcg ggcgggcctc agtcaacgac ccacatgtcg
    10621 ccgctgtgta tgagcttttc gagccggccg cggccctggc gctcgacggc cgcctctatc
    10681 tgctggcgca taaggtcttc gtaggtgtcg cgctgcacgt cgcggaagac gccgaccggc
    10741 tgcgggaagt ccgggtactc catgcgcgcg agcatgaagg cgaccgaggg gtctttctcg
    10801 tgggcgtcgt ggacgaggca gtcgttctcg ttgaggcccg tctcggagcc gaggtgtatg
    10861 acctcaggca gcgtcccgct catccttatc ccgcggtcgc ggttcttgcc gaagaccatg
    10921 ggcttcccgt gctcgaggta aagcacgttg tcgggccgcg ccgtccgctc ggcgaaggag
    10981 tcgaacgcgc cgtcgttgaa gatgttgcag ttctgataga cctcgacgaa ggagatgccc
    11041 ttgtggcgcg cggccgcgtc aacgacggag ccgaggtgct tcacgtcaat gtcaatcgag
    11101 cgagcgacga aggttgcctc cgacgcgatg gcgagcgaca gggggttcac ggggtagtca
    11161 atcacgccca tcggcgtgga cttcgtcttc ttgccgaact cgctggtcgg gctgtactgg
    11221 cccttcgtca ggccgtagat gcggttgttg aagagtacgt agttgaggtc taggttgcgg
    11281 cgtatggcgt gcatgaagtg gttgccgccg atggagagcg cgtcgccgtc gcctgtgatg
    11341 acccagaccg acagctccgg gttcgccgcc ttgatgccgg tcgcaatcgc gggcgcgcgg
    11401 ccgtgtatgc tgtggaaccc gtacgtgttc atgtagtagg ggaagcgcga cgagcagccg
    11461 atgccggaga cgaagactat cttctcgcgc gggatgccca gctccggcat caccttctgc
    11521 acgttgttca gtatcgcgta gtcgccgcag cccgg
//
LOCUS       DASPKR010000353         2327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1083638, whole genome shotgun sequence.
ACCESSION   DASPKR010000353 DASPKR010000000
VERSION     DASPKR010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1083638"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..565
                     /locus_tag="VD968_09625"
     CDS             <1..565
                     /locus_tag="VD968_09625"
                     /inference="COORDINATES: protein motif:HMM:NF037959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HYE14686.1"
                     /translation="YFYLEEGTRLRAHVEDGRGFIRRAREKYDLVVLDAYTIGGQIPF
                     HLTTREFFGEVKAALSPGGVLLANVNGSLEGRRSRVVRSEYKTLAGVFEGVHVFPLPE
                     EAERGAVGGRLDPSRRRNVILVAADGAGAWGAERAGRAAEELVRRGVVRVPTFAEDAR
                     RLLEGPLRTDDVPVLTDDYAPVDTMVF"
     gene            537..1472
                     /locus_tag="VD968_09630"
     CDS             537..1472
                     /locus_tag="VD968_09630"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HYE14687.1"
                     /translation="MRRLTRWSFSAALLAAAALAPPACSRKAAAPPPHKAPRFDGQRA
                     YSRLVELCSFGPRNHGSEGKARAEGWIKAALGEAGAEVSAHEFRHAPKGGGAEGVFRN
                     IVGRIRPEESRRVMFATHYDTRSWADRDPRPERRGEPIVGANDGASGVAVLLEMAALW
                     KSEPPPVGVDLIFFDGEDFGRGQDWDEYFLGSKAWARDFADYRPEWGVVVDMVCDASL
                     KLRKERDSVARAPAVVARLWEAAARVGSTAFSDEAGGRVLDDHTAFLERGLPVALVID
                     FEYRWFHTSGDTPDKCSAESLGQVGRALMEALEAP"
     gene            1496..>2327
                     /locus_tag="VD968_09635"
     CDS             1496..>2327
                     /locus_tag="VD968_09635"
                     /inference="COORDINATES: protein motif:HMM:NF016952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminyl-peptide cyclotransferase"
                     /protein_id="HYE14688.1"
                     /translation="MMGMTLKKLSRGGRSVALSLAVSALAAGCESPPAGGAAPSSSPA
                     ASAAASTPAASPAGSPAMVQTYTYEVVNRFPHDPKAFTQGLVFDGGEILESTGQYGES
                     TLRRVEPKTGKVIKSVKVEPQYFGEGLTLFGGKIYQLTWTTRRGFIYDPASFERLGEF
                     SYDGEGWGLTHDGESLILSDGTSQLRFLDPATFKLKRAVNVTDEKGRPVRDLNELEHV
                     KGEIFANIWHSDRIARINPSTGRVTGWIDLAGLMPPTAIGNNPEAVLNGIAYDEAGDR
                     L"
BASE COUNT          377 a          733 c          852 g          365 t
ORIGIN      
        1 atatttctac ctcgaagaag gcacgcgcct gcgcgcgcac gtggaggacg gtcgcggctt
       61 catcaggcgc gcgcgcgaaa agtatgacct cgtcgtgctc gacgcctaca ccatcggcgg
      121 gcagattcct ttccacctga cgacgcgcga gtttttcggg gaagtgaagg cggcgctctc
      181 gccgggcggc gtgctgctgg cgaacgtaaa cggctctctc gaaggccgga ggagccgcgt
      241 ggtgcgctcc gaatacaaga cgctcgcggg cgtcttcgag ggcgttcacg tcttcccgct
      301 ccccgaagag gcggagcgcg gcgccgtggg aggccgactt gacccctcca ggcgccgcaa
      361 cgtcatactc gtcgccgccg acggcgccgg ggcgtggggg gcggagaggg cgggccgagc
      421 ggccgaagag ttggtgcgcc ggggcgtggt gcgcgtgccg accttcgcgg aagacgcgcg
      481 gcggcttctt gaggggccgc ttcggacgga cgacgttccc gtgctcacgg acgattatgc
      541 gccggttgac acgatggtct tttagcgcgg cgcttctggc ggcggccgcg ctcgcgcccc
      601 cggcgtgctc gcgcaaggcc gcggcgcctc cgccacataa ggcgccgcgc ttcgatgggc
      661 agagggcgta cagccgcctc gtcgagcttt gctccttcgg gccgcgcaac cacgggagcg
      721 agggcaaggc gcgggccgag gggtggataa aggcggcgct cggagaggcg ggcgcggagg
      781 tttccgccca cgagttccgc cacgccccga agggcggggg cgccgaaggc gtcttccgta
      841 acatcgtagg aaggataagg cccgaggagt cgcgccgcgt aatgttcgcg acgcactacg
      901 acacgcgctc ttgggccgac agagacccgc ggcccgaacg ccgcggcgag ccgattgtcg
      961 gcgcgaacga cggggcttct ggtgtcgcgg tgctgctcga gatggccgcg ctatggaagt
     1021 ctgagccgcc gcccgtcggc gttgacctga tattcttcga cggcgaggac ttcgggcgcg
     1081 ggcaggattg ggacgagtat tttctcgggt cgaaggcgtg ggcgcgcgac ttcgcagact
     1141 acaggccgga gtggggcgtc gtcgttgaca tggtatgtga cgcttctttg aagttgagga
     1201 aggagaggga ttctgtcgcg cgcgcgcccg cggtcgtcgc gcggctgtgg gaggcggcgg
     1261 cgcgcgtcgg ctccacggcc ttctcggacg aggcgggcgg gcgcgtgctc gacgaccaca
     1321 cggccttcct cgaacgtggc ctgcccgtgg cgctcgtgat tgatttcgag taccgttggt
     1381 tccacacttc cggggacacg cccgataagt gctcggccga gagcctcgga caggtggggc
     1441 gcgcgttgat ggaggcactc gaagcgccgt aggcgggggg cgaagggcca gtttgatgat
     1501 gggaatgacg ctgaaaaaat tgtcgcgcgg cggccggtcg gtcgccctgt cgctggcggt
     1561 ctcggcgctc gcggcgggct gcgagtcgcc gccggccggg ggcgccgcgc cgtcgtcgtc
     1621 gcccgccgcc tcggccgcgg cttcaactcc ggccgcctca cccgccggga gccctgcgat
     1681 ggttcaaact tacacctacg aagtcgtcaa ccgattcccg cacgacccga aggccttcac
     1741 gcaggggctc gtcttcgacg gcggggaaat tcttgagagc accgggcagt acggcgagtc
     1801 aacgctgcgc agggtcgagc cgaagaccgg caaggtcata aagagcgtga aggtggagcc
     1861 ccagtacttc ggcgaggggc tgacgctctt cggcgggaag atttaccagc tcacctggac
     1921 gacgcgccgg gggttcatct acgacccggc gagcttcgag aggctcggcg agttcagcta
     1981 cgacggagag ggatggggcc tgacgcacga cggcgagagc ctcatactca gtgacggcac
     2041 cagccagcta cgtttcctcg acccggctac cttcaagctg aagagagccg tgaacgtcac
     2101 ggacgagaag gggcggcccg tgcgcgactt gaacgagcta gagcacgtca agggcgaaat
     2161 cttcgcgaac atctggcact ccgaccgcat cgcgcgcatt aacccctcga cagggcgcgt
     2221 cacgggctgg attgacctcg cgggcctaat gccgcctacg gccatcggca acaaccccga
     2281 ggccgtctta aacggcatcg catacgacga ggcgggcgac cgcctct
//
LOCUS       DASPKR010000354         3615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1599909, whole genome shotgun sequence.
ACCESSION   DASPKR010000354 DASPKR010000000
VERSION     DASPKR010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3615)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3615
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1599909"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VD968_09640"
     CDS             <1..330
                     /locus_tag="VD968_09640"
                     /inference="COORDINATES: protein motif:HMM:NF025668.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III-like domain-contianing
                     protein"
                     /protein_id="HYE14689.1"
                     /translation="VGGRSIRPDGRVVVTVEVENAGRRAGDEVVQLYVRDVASSVTRP
                     VRELKGFERVTLQPGERRRVSFTLTPEHLGSLDQRMRFTVEPGEFRVFVGTSSVGGLE
                     DGFTVVR"
     gene            354..1676
                     /locus_tag="VD968_09645"
     CDS             354..1676
                     /locus_tag="VD968_09645"
                     /inference="COORDINATES: protein motif:HMM:NF021596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HYE14690.1"
                     /translation="MSKKRKIFRSAFNVLSSALLLLSVPFNHSSGQARLSAADDAFLE
                     DLSRRTFQYFLDHADPETGLVLDRARTNGEAHPEGHASFRIASSAATGFGLTALCVGA
                     ARGWVSREEAVRRALVTLRFFAERAPQERGWFLHWMDARTGERRWKSEYSSIDTALLL
                     GGVLTARRCFDREPEVARLATLIYERVDFPWMLAGGASFSHGWRPETGFIKYRWDNYS
                     EHLILQLLAVGSPTRPVRPGVWRAWARKRITYAGRTFLSDGPLFTHQFSHAWVDFRGR
                     REPWYPFTDYFENSVTATRAHRQFCIDLSAEFPGYAEDVWGITASDSDEGYVAWGGPP
                     RHPDIDGTVVPCAAGGSLMFAPDIALPALRAMRERYGERIYGLYGFADAFNPTTGWTN
                     PDVIGIDLGITLLSAENLRTGRVWAWFMANEEIPRAMRQVGLRKVARR"
     gene            complement(1743..3146)
                     /locus_tag="VD968_09650"
     CDS             complement(1743..3146)
                     /locus_tag="VD968_09650"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HYE14691.1"
                     /translation="MLTKNRLLRVAALVVLLAPAHGGALARQQQRDVSKETARTDVPA
                     WVKNGVVYEIFPRVFSEQGNFNGVTAQLDRLKELGVNILWLMPIHPLGQEKKKGTIGS
                     PYAVRDYYAINPDYGTADDLKRLVREAHRRDMKVFIDVVANHTSWDSVMMKTPEFYVR
                     DPSTGRINSPHDWTDVAELNYESPALRKYMADMLTYWVKEFDLDGFRCDVAAEVPTAF
                     WEQARQALEKVKPDIALLAESDRPELLVRAFDFDYAWPMHGALTDVLHGRRPASALRE
                     TWASDAAKYPRGALRMRFSDNHDERRAIARFGEPAALAASALMLTLDGVPMLYNGMEV
                     GDTAESGDPALFERLMIFWPIVKRRPHFPRFYQRMITLRKAHPALQQGEVVWVRNGDE
                     SRVLTYLRRAGGEEFLVAVNLSKEPFVGFVEAAGNFADVTPDINSATPAQTAARPAAL
                     PALALDPWGYRIFRRQK"
     gene            complement(3149..3463)
                     /locus_tag="VD968_09655"
     CDS             complement(3149..3463)
                     /locus_tag="VD968_09655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14692.1"
                     /translation="MGVYMGVFNFFIVIPEIIASFTFGPVIRAVFGPDNPRAPLFVVM
                     AGGAFLLVAALCVSFVRDEADRDVPESAVIRGDEEEPLLVQQSAQPVPSTGLIDDEGR
                     GR"
BASE COUNT          555 a         1226 c         1230 g          604 t
ORIGIN      
        1 gtcggcggca ggagcatacg gccggacggc cgcgtagtcg tcaccgtcga ggtcgagaac
       61 gcgggccgcc gcgcgggcga cgaggtcgtg cagctctacg tgcgcgacgt tgcgtcgagc
      121 gtcacccggc ccgtgcgtga actgaagggc ttcgagcgcg tcacgcttca acccggcgag
      181 cgccgccgcg tctccttcac gctcacgccc gagcacctcg gctccctcga ccagcgcatg
      241 aggtttacgg tcgagccggg cgagttccgc gtcttcgtcg gcacgagctc cgtcggcggc
      301 ctcgaagacg gcttcaccgt cgtcagatag tgcggaagtc agagcgcaga gtgatgagta
      361 agaagcggaa aatcttccgt tctgcgttca acgttctgtc ttccgcactc ctcctcctgt
      421 ccgtcccctt caatcattcc tcagggcagg cccggctgtc ggccgcggac gacgccttcc
      481 tcgaagacct ctcgcggcgc acgttccagt acttcctcga ccacgcagac cccgagaccg
      541 gcctcgtgct agaccgcgcg cgcacgaacg gcgaggccca ccccgaaggt catgcaagct
      601 ttcgtatagc aagcagcgcc gcgaccggct tcggcctgac cgcgctgtgc gtcggggccg
      661 cgcgcggctg ggtctcgcgg gaggaggccg tgcgccgcgc gctcgtcacc ttacgcttct
      721 tcgccgagcg cgcgccgcaa gagcgcggct ggttcctgca ctggatggac gcgcgcacgg
      781 gcgagcggcg atggaagagc gaatactcct cgattgacac ggcgctgctg ctcggcggcg
      841 tgctcaccgc ccggcgctgc ttcgaccggg agccggaggt cgcgcgtctc gccacgctga
      901 tttacgagcg cgttgacttc ccctggatgc tcgcgggcgg cgcgagcttc tcgcacgggt
      961 ggcgtcccga gaccggcttc atcaagtacc gctgggacaa ctatagcgag cacctcatac
     1021 tacaactgct cgccgtcggc tcgcccaccc gccccgtaag gccgggcgtt tggcgcgcgt
     1081 gggcgcgcaa gcgcatcacc tacgcgggcc gaactttctt gagcgacggc ccgctcttca
     1141 cgcaccagtt ctcacacgca tgggttgact tccgcggccg ccgcgagccg tggtacccgt
     1201 tcacagacta cttcgagaac tccgtgacgg cgacgcgcgc gcaccgccag ttctgcatag
     1261 acctctcggc cgagttcccc ggctacgccg aggacgtttg gggcatcacc gcctcggaca
     1321 gcgacgaggg ctacgtcgcg tggggcgggc cgccgcgcca ccccgatata gacggcacgg
     1381 tcgtcccgtg cgccgcgggc ggctccctca tgttcgcgcc cgacatagcc ctgccggcac
     1441 ttcgcgcgat gcgcgagcgc tacggcgaaa gaatttacgg gctctacggc ttcgcggacg
     1501 ccttcaaccc gacgacgggg tggacgaacc ctgacgtgat cggcatagac ctcggcatca
     1561 cgctgctttc ggccgagaac cttcggacgg gccgcgtctg ggcgtggttc atggcgaacg
     1621 aggagattcc gcgggctatg cgacaggtgg gcctaagaaa ggtggcgcgt cgctaggacg
     1681 cgagcggcgc ggaggcgtaa gccttattag ccgcgccgcg gcgttctcga cttaaccttt
     1741 ttctactttt gcctcctgaa aatccggtag ccccaggggt cgagcgcgag cgcggggagg
     1801 gccgcgggtc gcgcggcggt ctgcgcgggc gtcgcagagt tgatgtcggg cgtcacgtcg
     1861 gcgaagttgc cggccgcctc aacgaagccg acgaagggct ctttcgagag gttgacggcg
     1921 acgaggaact cttcgccgcc cgcgcggcgc aggtatgtga gcacgcgcga ctcgtctccg
     1981 ttcctgaccc acacgacctc gccctgctgt agcgccgggt gagcctttcg cagcgtgatc
     2041 atgcgctggt agaagcgcgg gaagtgcggc cggcgcttca cgatgggcca gaagatcatc
     2101 agccgctcga acagcgccgg gtcgcccgac tcggccgtgt cgcccacctc catgccgttg
     2161 tagagcatgg gcacgccgtc gagcgtgagc atcagggcgg aggcggcgag cgccgcgggc
     2221 tcgccgaagc gcgcgatcgc gcgccgctcg tcgtggttgt cggagaagcg catgcgcagg
     2281 gcgccgcgcg ggtacttcgc ggcgtccgag gcccaggttt cgcgcagcgc cgaggcgggc
     2341 cgccgcccgt gcaggacgtc cgtcaaagcg ccgtgcatcg gccacgcgta gtcgaagtcg
     2401 aaggcgcgca cgagaagctc cggcctgtcg gactcggcta gcagcgcgat gtcgggcttg
     2461 accttttcga gcgcctgccg ggcctgctcc cagaaggcgg tcggcacctc ggcggcgacg
     2521 tcgcagcgga agccgtcgag gtcgaactct ttcacccagt aggtgagcat gtcggccatg
     2581 tacttccgca gcgccgggct ttcgtagttg agctcggcca cgtccgtcca gtcgtgcggc
     2641 gagtttatcc tccccgtcga ggggtcgcgg acgtagaact cgggcgtctt catcatcacg
     2701 ctgtcccagg aggtgtggtt ggcgactacg tcaatgaaga ccttcatgtc gcggcggtgc
     2761 gcctcgcgca cgagccgctt gaggtcgtcg gccgtgccgt agtccgggtt tatcgcgtag
     2821 tagtcgcgca cggcgtaggg gctcccgata gtccccttct tcttctcctg ccccagcggg
     2881 tgaatcggca tgagccagag gatgttgacg ccgagctcct tgagccggtc gagttgggcg
     2941 gtgacgccgt tgaagttgcc ctgctcggag aagacgcgcg ggaagatttc atagacgacg
     3001 ccgttcttga cccaggcggg cacgtccgtg cgcgcagtct ccttcgaaac gtctcgctgc
     3061 tgctgacgcg ccagggcgcc gccgtgggcg ggcgcaagga gcacgacgag ggcggcgact
     3121 ctaagcagcc tgtttttcgt caacatgttc atcgccccct gccctcgtcg tctatgagcc
     3181 cggtgctggg caccggctgc gccgactgct gcacgagcag cggctcctcc tcgtcgcctc
     3241 ttatgacggc gctctccggc acgtcgcggt cggcctcgtc gcgcacgaac gagacgcaca
     3301 gcgcggcgac cagcaggaag gccccgcccg ccatcactac gaagagcggc gcgcgcgggt
     3361 tgtcggggcc gaagacggcg cggatgaccg ggccgaaggt gaacgaggcg attatctcgg
     3421 ggatgacgat gaagaagttg aagacgccca tgtaaacgcc catccgcgtc ggcggccaca
     3481 acgtgctgga gccggccctc gacgcgcgct gcgtcctgac ggggccgcac acctcgaact
     3541 tcgccgagat cgtccgcgcc ttcctcgaac acggcgccct cgtccaactg cccgaggtcg
     3601 aagagggcgc ggcgg
//
LOCUS       DASPKR010000355        10152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1860803, whole genome shotgun sequence.
ACCESSION   DASPKR010000355 DASPKR010000000
VERSION     DASPKR010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10152)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10152
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1860803"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            56..964
                     /locus_tag="VD968_09660"
     CDS             56..964
                     /locus_tag="VD968_09660"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYE14693.1"
                     /translation="MFFTDSYQALRRGEKRRALRLVMLSVMTLVALGLPVGFFMLRRF
                     EASVTFHPEREPAGGSWKVPAGGEDVWFTTADGVRLHGWFLRAGQRPAAATVIFFHGN
                     GGNISYADWVGVNLSRRGFDVLLFDYRGYGRSEGALTDERGIYADADAAYDFVVRERG
                     APPERLALYGQSLGTAAAVDVASRRPCGALVLESGLSSAGEMAGVIIPWLPRFVRGLT
                     RNKFDSVGKLPRVGCPVLVAHGDRDEVIPVAQGRALYEAAPEPKRLVVIPGAGHNDLS
                     IVGGAQYLDALAGFVKESVQPVGDER"
     gene            961..2490
                     /locus_tag="VD968_09665"
     CDS             961..2490
                     /locus_tag="VD968_09665"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HYE14694.1"
                     /translation="MRRTASPQLNRLAVALAFVLLSAISAGAQGEQQKVLRWGADPSG
                     GAPYVFTDPAHPDKYVGYELEMVEALASAMKRRPEFVPTDWETIVEALQRGSFDVIVN
                     GLEPTADRERVILFSKPYYIFQLQLTVRKSETRISSLEDCRKRLVGTLGNTAASRLME
                     KEGIPFKGYADPVAAYRDLELGRIDAVLMDVPMEMFYARENARLKPAGEPFHRGAYVV
                     GLRKGDGALKSEVDKAIDEITRDGTLERILTKWKLWNAAQAELQAAALAGEEKQAPPA
                     AYEVTGTSFNWGEALLRLSRAALVTVMLSFGAMIIAVTLGLALALGQSKGPAWLRALT
                     TIYVEFFRGTPVLVQLLFLYFGLPKLGLAMPGWLTALVGLGLNYAAYESQVYRAALDA
                     VPRGQTEAAYSLGMSPLLAFRRIILPQALRIALPPMTNDFVSLFKDTSVAFAISVWEL
                     ATAYRELANASGEFMLLGVIVSAFYLLMSLPLAHLARRLESRMRSRQAEREPAGEEAE
                     A"
     gene            2487..3227
                     /locus_tag="VD968_09670"
     CDS             2487..3227
                     /locus_tag="VD968_09670"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HYE14695.1"
                     /translation="MIRAENVGMKAGDATILRGVNFEVAERKVLGVIGPSGSGKSTLL
                     RCLNGLNRITEGAVECDGVRLEASLTDQEYQRRVKQLRRRVGMVFQHLYLFPHLTVLG
                     NITEAPVHVLRQPKRDAEARALELLENVGLAKAARRFPESLSGGEQQRVAIVRALAMR
                     PRVLLFDEPTSALDPRRSSELRALFRRFAEEGQTMVIVSHSMKFLEGIADWMLYMEAG
                     EIVEQGETARLFGDPQDPRTRDFLRQAH"
     gene            3232..4155
                     /locus_tag="VD968_09675"
     CDS             3232..4155
                     /locus_tag="VD968_09675"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HYE14696.1"
                     /translation="MTKKLLSTTLALAACFALARAQEAPKPAAAPQTPSPAAEMDRRV
                     REEAARFRGRVSLFAKNLDTGETYSFGGDDRVRTASTIKVAVMIEAWARVAEGRAKWT
                     DELVLAKEKKVSGSGILPEFADGLKLTLRDGVTLMMTLSDNTATNLLLDVLTADAVNA
                     RMESLGLREIRLNRKVGGGGESEEGKREESKRFGLGRSTPREMIVLLEKLERGEVVSA
                     AASKEMLELMKREQNRHGIWRGLWQIPKATKSGALDALRADVGLIYHPRGRIALAVTC
                     DDMPGVEWTPDNPGLLLMSRLSDIVLYGLGR"
     gene            4202..5086
                     /locus_tag="VD968_09680"
     CDS             4202..5086
                     /locus_tag="VD968_09680"
                     /inference="COORDINATES: protein motif:HMM:NF024763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE14697.1"
                     /translation="MANPARRLAENVAGDFFVDGTCIDCDACRQIAPLTFRDHGDQSS
                     VYRQPETEAETLRALMALAACPTGSIGTTGGQSARAGVEAFPERIDGNVYFCGFTAES
                     SFGAWSYLIVRPEGEGGNVLVDSPRFTRPLVRKIREMGGVATIFLTHRDDVADHDAFA
                     REFGAARVMHRDDNAARYGVERVVEGGAAARLDGDLIVIPTPGHTRGHAVLLYKEKYL
                     FTGDHLAWSPTRRTLTAFRSACWYSWAEQVRSMERLLDYSFEWVLPGHGRIHHDTPEG
                     MREHLVNCIGWMKSVGKG"
     gene            complement(5083..5469)
                     /locus_tag="VD968_09685"
     CDS             complement(5083..5469)
                     /locus_tag="VD968_09685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14698.1"
                     /translation="MPVPLFPAFDVAIEPVSAATGFNPLPVFAVVFVAEALVLWLVRW
                     GSLGRSAVASLAMNTVTTVLGVLLSLSAREAIVMSFPLNLVVEGVVLMAFNWRKKARS
                     WAAALAANVASLLLLLALYFVGRSLF"
     gene            complement(5500..6240)
                     /locus_tag="VD968_09690"
     CDS             complement(5500..6240)
                     /locus_tag="VD968_09690"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14699.1"
                     /translation="MRKNIIICVAGLVVGFALGFYVTNAITNPSKLVAAARPAGGAGQ
                     AGPLGPDQSAGELPPDHPDIGGGAAGAGEGSAASTSAKAQQAMDKADRSPKDFDAQVE
                     AAKVFYGLSDYTKGALYADRALAIKPRDFDALVLMGNTKYDAGDFEAAATFYERALAV
                     KPDSPDVRTDFGNTFFNRKDFDRAIAEYRKSIAVDPGHLNGWKNLAAAALNKKDREAA
                     REAVERLEKLAPGSPETEAFRQKLDEMQ"
     gene            6489..7979
                     /locus_tag="VD968_09695"
     CDS             6489..7979
                     /locus_tag="VD968_09695"
                     /inference="COORDINATES: protein motif:HMM:NF016995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein ResB"
                     /protein_id="HYE14700.1"
                     /translation="MRKAQAVLPSAPSLVTRFLNLLSSVRFGVVVLILLVIACMIGML
                     VMQQNVEGFDKYYAELTPASKFLFGALGFFDIYHVWYFNALLLILSLNIVLASIDRFP
                     SAWSFVRRKKLDASPRWLAGQEQSATLRLEGESGQAVAMRIAEAFKVGRLKSTITEKN
                     GKTFVFGERGAWNRLGAYAVHVALLTIFFGGFLTAQFSRVGNMPLEPGDTASTMNERI
                     VERDQFSIAEYQLPFEVECTDIQQTLIKKEGAITADNTLDWLTRIKIKDPERGETEAV
                     VHMNNPFDYRGYRFFQASFIGEGKAREIRLQVTPASGGAPQELTIPRDGSATLPDGTR
                     IDFADFQANFSLGNRQEEVDGSFYTNPAAVLGVTPAGGGARQRAFAFPPAIADNAPFA
                     KQPVGGYTFRLLSFEKVPKAHVLSVQKDPGATVVYVGFTLLGLTLCAVFFFSHDRVWA
                     HIEEREDGRFEAVIGGNTNRNHLGFGDRFRRVIEAAGGETFEVKKS"
     gene            7976..9610
                     /gene="ccsA"
                     /locus_tag="VD968_09700"
     CDS             7976..9610
                     /gene="ccsA"
                     /locus_tag="VD968_09700"
                     /inference="COORDINATES: protein motif:HMM:NF013725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HYE14701.1"
                     /translation="MSEVLKQPAVVAAPAIKIKESGLSSYLPAALAVVGAVALTLLRI
                     EVGGERFIGDVSLMMLALACYLAAAVFHLTNLYAPSTLFQRLGLWAATLGVFFNLASW
                     GVRWVAAFDREWAIHVTQGTPMPWVWRYIPFANLYDLSLAFAFGAGITTLLIAHRPSF
                     HFLGAVSLPLAAIILVLARFIGGELINLPPVLDSYWRPIHVGIASLSYGIALVCFAVA
                     VVYLLKDGVKTEAMAVWSSIFAIAVIATVSRGTVFFPSTLGTYGASTFLQPRMPLPLR
                     AEIPYVGWLLLLAGVLLAGVIALFCRYLYGGAGEQSRRWGHHLLKAALATQALAVCVL
                     VWQVKAVSDIAVCSGERPAGTACVATWQFQKFGAWMAGQDGMTPQQVAAIDPARLEQA
                     ASQFLSQRNDELYLSLNANPVELAALITAFAGTLFVIIFSFRTDKLREALPAKEKIDS
                     LMYKTAGVTFAGLALLLMTGAVWANESWGRYWGWDSKETGAFVAWLTYGAFLHTRISR
                     GWAGRSSAYFAIVAFLLVVFTYLGVSYLLPGLHSYA"
     gene            9682..>10152
                     /locus_tag="VD968_09705"
     CDS             9682..>10152
                     /locus_tag="VD968_09705"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14702.1"
                     /translation="MTRENVLFGAVGLLLGYLIAFHVVVHVNQGEAGSRLAASSSAAG
                     QGADEVLPPDHPALPTNEVKDRQRLLSAAEAAARAARESPKDFDAQAKAADAYMEAGS
                     FEDAIDFLTRANELRPDDYGTLVKLGNSYTAAERYETAEKWYKAALAKKPSDPDV"
BASE COUNT         1648 a         3425 c         3383 g         1696 t
ORIGIN      
        1 acgtcctgct cgactacctc gacaggaacg ccgggaagca gtagcccgca actcgatgtt
       61 ctttaccgat tcgtaccagg ctctcaggcg cggcgagaag cggcgcgcgc tgcggctggt
      121 catgctatca gtcatgacgc tcgtggccct ggggctgccg gtgggcttct ttatgttgcg
      181 ccgtttcgag gcatcggtca cctttcaccc tgagcgcgag ccggcgggcg gctcgtggaa
      241 agtccccgcg ggcggcgagg acgtttggtt cacgaccgcc gacggagtgc gcctgcacgg
      301 ctggttcctt cgcgcgggcc agcggccggc cgccgcgacc gtcatcttct tccacggcaa
      361 cggcggcaac ataagctatg ccgactgggt cggcgtgaac ctctcgcgcc gcggcttcga
      421 cgtgctgctc ttcgactacc gcggctacgg gcgcagcgag ggcgcgctca ccgacgagcg
      481 cggcatctac gcggacgccg acgccgccta cgacttcgtc gtgcgcgagc gcggcgcccc
      541 gcccgagagg ctcgcgctct acggccagtc tctggggacg gcggccgcgg tggacgtggc
      601 ttcccgaagg ccgtgcggcg cgctcgtcct cgaatccggc ttaagcagcg cgggcgagat
      661 ggcgggcgtg ataatcccgt ggctcccgcg cttcgtgcgg ggcctgacgc gcaacaagtt
      721 cgactccgtc ggtaaactcc cgcgtgtcgg ctgccccgtg ctggtcgctc acggcgaccg
      781 cgacgaagtg atacccgtcg cgcaggggcg cgcgctctac gaggccgcgc ccgagcccaa
      841 gcggctagtg gtcattcccg gcgcgggcca caacgacctc tcaatcgtcg gcggcgcgca
      901 gtacctcgac gcgctcgcag ggttcgtgaa ggaaagcgtc cagccagtcg gagacgaacg
      961 ttgagacgga cagcaagccc tcaacttaat cgtctcgccg tcgcgctcgc cttcgtgctg
     1021 ctctcggcaa tctcagcggg cgcgcagggg gagcagcaga aggtcttgcg ctggggcgca
     1081 gacccgagcg gcggcgcgcc ctacgtcttc acagacccgg cgcacccgga caagtacgtc
     1141 ggctacgagc tggagatggt cgaggcgctc gcctccgcga tgaagcggcg gcccgagttc
     1201 gtcccgaccg actgggagac aatcgtcgag gctttgcagc gcggctcctt cgacgtgatc
     1261 gtgaacgggc tcgagccgac ggccgaccgc gagcgcgtca tcctcttcag caagccctac
     1321 tacatcttcc agctacagct cacagtgcgc aaaagcgaaa cgcgcatcag ctcgctcgaa
     1381 gattgccgca agcgcctcgt cggcacgctc ggcaacacgg ctgcgtcgcg gctgatggag
     1441 aaggagggaa tccccttcaa gggctacgca gacccggtgg ccgcctaccg cgacctcgag
     1501 ctagggcgca ttgacgccgt cctgatggac gtgccgatgg agatgttcta cgcgcgcgaa
     1561 aatgcgcgcc tcaagccggc gggcgagccc ttccaccgcg gcgcctacgt cgtggggctg
     1621 cggaaagggg acggggcgct caaaagcgag gttgacaagg cgattgacga gataacgcgc
     1681 gacggcacgc tcgaacgaat actgacgaag tggaagctct ggaacgccgc gcaggcggag
     1741 cttcaggccg ccgcgctcgc gggcgaagag aagcaggccc cgcccgccgc atacgaggtc
     1801 acgggcactt ccttcaactg gggagaggcg ctgcttcgac tgtcgcgcgc tgcgctcgtt
     1861 accgtcatgc tgtcgttcgg cgcgatgata atcgccgtca cgctcggcct cgcgctcgcg
     1921 ctcgggcagt cgaaggggcc ggcgtggctg cgcgcgctca cgaccatcta cgtcgagttc
     1981 ttccgcggca cgcccgtcct cgtgcagctc ctgttcctat acttcggcct gcctaagctc
     2041 gggctggcta tgccgggctg gctcacggct ctggtgggct tggggctcaa ctacgccgcg
     2101 tacgagtcgc aggtctatcg cgccgcgctc gacgccgtgc cgcgcggtca gaccgaggcc
     2161 gcgtactcgc tcgggatgtc gcccctcctg gccttccggc ggataatcct gccgcaggcg
     2221 cttcgcatcg ctctgccgcc gatgacgaac gacttcgtct cgctcttcaa agacacttcg
     2281 gtcgccttcg ccatctcggt ctgggagctt gcgaccgcct accgcgagct tgccaacgcc
     2341 tcgggcgagt tcatgctcct cggcgtaatc gtctcggcct tttatctttt gatgagcctg
     2401 ccgctcgcgc acctcgcgcg caggctggaa tcgagaatgc ggagccggca ggcggagcgc
     2461 gagccggccg gggaggaggc cgaggcgtga tacgggcgga aaacgtcggg atgaaggcgg
     2521 gcgacgcgac catcctgcgc ggcgtcaatt tcgaggtcgc cgagcggaag gtcttaggcg
     2581 tcataggccc ttcggggagc ggcaagagca cgctacttcg ctgcctgaac ggcctgaacc
     2641 gcatcacgga gggcgcggtc gagtgcgacg gcgtgcggct cgaagcctcg ctcacggatc
     2701 aagagtatca gcggcgcgtc aagcagctac ggcgccgcgt cggcatggtc ttccagcacc
     2761 tatacctctt cccgcacctc accgtgctcg ggaacataac ggaggcgccc gtccacgtcc
     2821 tgcgccagcc caaacgcgac gccgaggcgc gagccctcga gctgcttgag aacgtcgggc
     2881 tcgcgaaggc ggcccgccgc ttccccgagt cgctctcggg cggcgagcag cagcgagtcg
     2941 caatcgtccg cgcgctcgcc atgcgcccgc gcgtgcttct gttcgacgag ccgacgagcg
     3001 ccctagaccc gcgccgcagc tcggagcttc gcgcgctctt ccggcgcttc gccgaagaag
     3061 ggcagacgat ggtgatagtc tctcactcga tgaagttcct cgaaggcatc gccgactgga
     3121 tgctctacat ggaggcgggc gagatagtcg agcagggcga gacggccagg ctcttcggcg
     3181 acccgcaaga cccgcgcacg cgcgacttcc tccgacaggc acactaaaac gatgacgaaa
     3241 aagctgctgt caacaacgct cgcgctcgcg gcctgcttcg cgctagcccg tgcgcaggag
     3301 gcgccgaagc cggccgccgc cccccagacc ccttcgcccg ccgccgagat ggacaggcgc
     3361 gtgcgcgagg aggccgcgcg cttccgcggc cgcgtcagcc tcttcgcaaa gaacctcgac
     3421 acgggcgaga cctactcgtt cggcggcgac gaccgcgtgc ggacggcgag cactatcaaa
     3481 gtcgccgtga tgatcgaggc ttgggcccgc gtcgccgaag ggcgcgcgaa gtggactgac
     3541 gagctggtgc tcgcgaagga gaagaaggtc tctggctcgg gaattctccc cgagttcgcc
     3601 gatggcctga agttgacgct gcgcgacggc gtgaccctca tgatgaccct gagcgacaac
     3661 actgcgacga acctcctgct cgacgtgctg acggccgacg ccgtcaacgc ccgcatggag
     3721 tcgctagggc tgagagagat tcgcctgaac cgcaaggtcg gcgggggcgg cgagagcgag
     3781 gaagggaagc gcgaggagag caagcgcttc ggcctggggc gcagcacgcc gcgcgagatg
     3841 atcgtgctgt tggagaagct cgagcgcggc gaagtcgtta gcgccgccgc ctcgaaggag
     3901 atgctcgaac tgatgaagcg cgagcagaac cgccacggca tctggcgcgg cctctggcaa
     3961 atcccgaagg ccacgaagtc gggcgctctc gacgcgctgc gagccgacgt ggggctaatc
     4021 taccacccgc gcggccgcat agccctcgcc gtcacctgcg acgacatgcc cggcgtcgag
     4081 tggacgcccg acaaccccgg cctcctcctc atgtcccgcc tctcggatat cgtcctctac
     4141 ggcctgggca ggtaggcccc ggcagcttgg agcccggagc ccggaacttt aaacttgccc
     4201 tatggctaac cctgcgaggc ggctggcgga gaacgtcgcg ggcgacttct tcgtggacgg
     4261 gacgtgcatt gactgcgacg cgtgccggca gattgcgccg ctcacgttcc gcgaccacgg
     4321 cgaccagtcg agcgtctatc gccagcccga aaccgaagcc gagacgctga gggcgctcat
     4381 ggcgctggcg gcatgcccca cgggctctat cgggacgacg ggcgggcaga gcgcgcgagc
     4441 gggcgtcgag gctttccctg agcggattga cgggaacgtc tatttctgcg gcttcacagc
     4501 cgagtcgagc ttcggcgcct ggagctacct gattgtccgg ccggagggcg agggcggcaa
     4561 cgtcctagtt gactcaccgc gcttcacgcg ccctctcgtc cgaaagattc gggagatggg
     4621 gggcgtcgcc accatcttcc tcacacaccg cgacgacgtg gcagaccatg acgctttcgc
     4681 gcgcgagttc ggcgccgcca gagtcatgca ccgagacgac aacgccgccc gctacggcgt
     4741 cgagcgcgtc gtcgagggcg gcgctgccgc ccgtctagac ggcgacctca tcgtcatccc
     4801 cacgcccggc cacacgcgcg gccacgccgt actgctctac aaagaaaaat acctcttcac
     4861 gggcgaccac ctcgcatggt cgccgacgcg gcggacgctc acggccttcc gcagcgcctg
     4921 ctggtactcc tgggccgagc aggtgcgctc gatggagcgc ctgcttgact acagcttcga
     4981 gtgggtgctg cccggccacg ggcgcataca ccacgacacg cccgaaggga tgcgcgagca
     5041 cctcgtcaac tgcatcgggt ggatgaagtc ggtcgggaaa ggttagaaga gcgagcggcc
     5101 gacgaagtag agcgcgagca ggaggaggag gcttgcgaca ttagcggcca gcgcggcggc
     5161 ccacgaccgc gccttcttcc gccagttgaa ggccatcagc accacgccct cgacaaccag
     5221 gttgagcggg aagctcatga caatcgcctc gcgcgccgag aggctcagca gcacgccgag
     5281 gacggtcgtt accgtgttca tcgcgaggct cgcgaccgcg gagcggccga gcgagcccca
     5341 gcggacgagc cagagcacca gcgcctcggc gacgaagacg acggcgaaga ccggcagtgg
     5401 gttaaagccc gtcgcggccg agacgggctc tatcgccacg tcgaacgcag ggaagagtgg
     5461 gacgggcatt cttccggctc ctgtcttccg ggttcttcct tactgcatct cgtcgagctt
     5521 ctgccggaac gcttcggtct cggggctgcc cggcgcgagc ttctccagtc gctcgacggc
     5581 ctcgcgcgcg gcctccctgt ccttcttgtt gagggcggcg gcggcgaggt tcttccaacc
     5641 gttgaggtgc ccggggtcaa cggctatgga cttgcggtac tcggcgatgg cgcggtcgaa
     5701 gtccttgcgg ttgaagaagg tgttgccgaa gtccgtgcgc acgtcgggcg agtcgggctt
     5761 gacggcgagc gcgcgctcgt agaaagtggc ggccgcctcg aagtcgcccg cgtcgtactt
     5821 cgtgttgccc atcaacacga gcgcgtcgaa gtctctgggc ttaatcgcga gcgcgcggtc
     5881 ggcgtagagc gcccccttcg tgtagtcgct aaggccgtag aagaccttcg cggcctccac
     5941 ctgcgcgtcg aagtctttgg ggctgcggtc ggccttgtcc atagcctgtt gagccttggc
     6001 ggaggtggac gcggccgagc cttcgcccgc gcccgcggcg ccgcccccga tgtcagggtg
     6061 gtcgggcgga agctccccgg cgctctggtc ggggccgagc gggccggcct gaccggcccc
     6121 gcccgcgggc cgggcggcag cgacgagctt cgacgggttg gttattgcgt tagtgacgta
     6181 gaagccgagg gcgaagccga cgaccaaacc ggcgacgcag atgattatgt tcttccgcat
     6241 acggcgcaat tcttacagga tgcggggcgc gcaggtcaaa tgtgagcgaa tttttcgccg
     6301 gcgaacgggg ccgccgattt gagttgctga gccgggggcg tttggttatc atctgggctg
     6361 taaatgtcgc aggcgaaacc ccacaggcat tcccgcgggc gttcgccgtc ttgatttccc
     6421 cgtgtctgtt gaacgttccg aattaaaccg tgatgtccgc cctcgaagag actaaaagcg
     6481 aaataggtgt gcgcaaagcg caggccgtgt tgccgtcggc cccctcgctc gtgacgcgct
     6541 tccttaacct cctgagcagc gtgcgcttcg gcgtcgtcgt gctaatactg ctcgtcatag
     6601 cctgcatgat cggcatgctc gtcatgcagc agaacgtgga agggttcgac aagtactacg
     6661 ccgagctgac gcccgcgtcg aagttcctgt tcggcgccct gggcttcttc gacatctacc
     6721 acgtctggta cttcaacgcg ctcctgctca tactctcgct caacatcgtg ctcgcctcga
     6781 ttgaccgctt cccctcggcg tggtctttcg tcaggcgaaa gaagctcgac gcctcgcccc
     6841 gctggctcgc cgggcaggag cagagcgcca cactacggct cgagggcgag agcggccagg
     6901 cggtcgccat gaggatagcg gaggccttca aggtcgggcg cctgaagtca accatcacgg
     6961 agaagaacgg caagaccttc gtcttcggcg agcgcggggc gtggaaccgc ctcggcgcct
     7021 acgccgtaca cgttgcgctg ctgaccatct tcttcggcgg cttcctcacc gcccagttca
     7081 gccgcgtcgg caacatgccg ctggagcccg gcgacaccgc cagcacgatg aacgagcgca
     7141 tcgtcgagcg cgaccagttc agcattgccg agtaccagct ccccttcgag gtcgagtgca
     7201 ccgacatcca acagactctc atcaagaagg aaggggcgat cacggccgac aacacgctcg
     7261 actggctcac ccgcatcaag ataaaagacc cggagcgcgg agagaccgag gcggtcgtgc
     7321 acatgaacaa cccgttcgac taccgcggct accgcttctt ccaggcgagc ttcataggcg
     7381 agggcaaggc gcgcgagatt cgccttcagg tgacgcccgc ctcgggcggc gcgccgcagg
     7441 agttgaccat cccgcgtgac ggctcggcca ccctgcccga cggcacgcgc atagacttcg
     7501 cggacttcca ggccaacttc tcgctcggca accggcagga agaggtggac gggagcttct
     7561 acactaaccc cgcggccgtt ttaggcgtga cccccgcggg cggcggcgcc cgccagaggg
     7621 ccttcgcctt cccgcccgcg attgccgaca acgcgccctt cgccaagcag cccgtcggcg
     7681 gctacacctt ccgcctgctc tccttcgaga aggtgccgaa ggcgcacgta ctctcggttc
     7741 agaaagaccc cggcgcgacg gtggtctatg tcggcttcac gctgctgggc ctgacgctct
     7801 gcgcggtctt cttcttctcg cacgaccgcg tgtgggcgca cattgaggag cgcgaagacg
     7861 ggcgcttcga ggccgtcatc ggcggcaaca cgaaccggaa ccacctgggc ttcggcgacc
     7921 gcttccggcg cgtaatcgag gccgcgggcg gtgagacttt cgaggtgaag aaatcatgag
     7981 cgaagttttg aagcagccgg ccgtggtcgc tgcgccggcg ataaagatta aagagtcggg
     8041 cctgtcatcc tacctgcccg cggcgctggc ggtcgtaggc gcagtggcgc tcacgctcct
     8101 ccgcatagag gtcgggggcg agcgcttcat cggcgacgtg tcgctgatga tgctcgcgct
     8161 cgcctgctac ctggcggccg cggtcttcca cctgacgaac ctctacgcgc cttcgaccct
     8221 cttccagcgg ctcggcctct gggcggcgac tctgggcgtc ttcttcaacc tcgcgagctg
     8281 gggcgtgcgc tgggtcgcgg ccttcgaccg cgagtgggcc atacacgtca cgcaggggac
     8341 gccgatgccc tgggtgtggc gctacatccc gttcgcgaac ctttacgacc tgagcctcgc
     8401 cttcgccttc ggcgcgggca tcacgacgct tcttatcgcg caccggccgt cgttccactt
     8461 cctcggcgcg gtctccttgc cgctcgcggc gatcattctc gtactcgcgc gcttcatcgg
     8521 cggcgagttg ataaacctgc cgcccgtgct cgacagctac tggcgcccca tacacgtcgg
     8581 catcgcgtcg ctctcctacg gcatcgcgct cgtctgcttc gccgtcgcgg tcgtctatct
     8641 gctcaaggac ggggtgaaga cggaggcgat ggccgtctgg tcgagcatct tcgcaatcgc
     8701 ggtcatcgcg accgtgagcc gcggcacggt cttcttcccc tcgacgctcg gcacctacgg
     8761 cgcctcgact ttcttgcagc cccgcatgcc gctgcctctg cgcgcggaaa tcccctacgt
     8821 cggctggctg ctgctgctcg cgggcgtgct gctcgcgggc gttattgccc tcttctgccg
     8881 ttacctgtac ggcggcgccg gcgagcagtc gcgccgctgg ggccaccacc ttctcaaggc
     8941 cgcgctcgct acgcaggcgc tggccgtctg cgtgctcgtg tggcaggtga aggccgtgtc
     9001 tgacatcgcc gtgtgctcgg gcgagcgccc ggccgggact gcgtgcgtgg cgacgtggca
     9061 gttccagaag ttcggcgcct ggatggcggg gcaggacggg atgacgccgc agcaggttgc
     9121 ggcgattgac ccggcgaggc tggagcaggc cgcttcgcag ttcctgagcc agaggaacga
     9181 cgagctttac ctgagcctca acgccaaccc ggtcgagctc gccgcgctga taaccgcgtt
     9241 cgcaggcacg ctcttcgtca tcatcttcag cttccgcaca gacaagctgc gcgaggcgct
     9301 cccggcgaag gagaagattg actcgctgat gtacaagacg gcgggcgtca ctttcgcggg
     9361 cctcgcgctg cttctgatga cgggggcggt gtgggcgaac gagtcgtggg ggcgctactg
     9421 ggggtgggac tcgaaggaga cgggcgcctt cgtcgcgtgg ctcacctacg gcgcgttcct
     9481 ccacacgagg atttcgcgcg ggtgggcggg ccgctcctcc gcctacttcg cgatcgtcgc
     9541 cttcctgctc gtggtgttca cgtaccttgg cgtaagctac ctgctgccgg gcctgcactc
     9601 ttacgcatga gtgaagcggc gtgcggcggg agacgagctg aaacagctta tctctcgtcg
     9661 cccgcccctc gcccccgctt tatgacaaga gagaacgtcc tcttcggcgc ggtcgggctg
     9721 ctgctcggct acctgatagc cttccacgtc gtcgtccacg tcaaccaggg cgaggcggga
     9781 tcgcggctcg ctgcctcttc gtctgcggcc ggtcagggcg ctgacgaagt gctcccgccc
     9841 gaccacccgg cgctgccgac gaacgaggtg aaggacaggc agcggctcct gtccgcggcc
     9901 gaggcggctg cgcgcgccgc ccgcgagagc ccgaaggact tcgatgcgca ggcgaaggcc
     9961 gcggacgcct acatggaggc cgggagcttc gaggacgcta ttgacttcct gacgcgcgcc
    10021 aacgagctcc ggcccgacga ctacggcacg ctcgtcaagc tcggcaactc ctacacggcg
    10081 gccgagcgat acgagacggc cgagaagtgg tacaaggccg cgctcgccaa gaagccctcc
    10141 gacccggacg tg
//
LOCUS       DASPKR010000356         2758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_438038, whole genome shotgun sequence.
ACCESSION   DASPKR010000356 DASPKR010000000
VERSION     DASPKR010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438038"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..600
                     /locus_tag="VD968_09710"
     CDS             <1..600
                     /locus_tag="VD968_09710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14703.1"
                     /translation="ALTVLASYVAVRHMRVTRTHLLQAKACLAFLNVAPGACLGEKVL
                     ENVPALRAWANRLDGMGFLRPGLLKSGRVSEFADDEQAAPASHGTFEITDAGDGTYTA
                     QGTATLARRGEPADAVALAYEDGAGEAHVFALAEIEGAWTIYGSLRQFSPRRYVRWRK
                     AFAAGELPPQAVALSAWAFDAETGSAQRIGGTRPFRRAE"
     gene            597..1328
                     /locus_tag="VD968_09715"
     CDS             597..1328
                     /locus_tag="VD968_09715"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYE14704.1"
                     /translation="MNETVQTAQRPAISIFFPAYNDAGSIALLVERAHETLESLAGDF
                     EVIVVNDGSTDSTQGVLDELARRRPALRVIRHERNRGYGGALRSGFAAATKEFVFYTD
                     GDGQYDVRELEKLVPLLTEGVDIVNGYKLKRADDASRKVIGAAYNRLAHLLFRIPVRD
                     VDCDFRLIRRRALERVRLTSTSGVICVELVHKLCAAGSRFAEAPVQHYPREHGRSQFF
                     TARRVARTALDLLRLWVKLVVLKRA"
     gene            1349..2431
                     /locus_tag="VD968_09720"
     CDS             1349..2431
                     /locus_tag="VD968_09720"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HYE14705.1"
                     /translation="MRRQHEEVASEALEAVGRVLASGSYVLGREVEAFEAEWAAYCGV
                     RAAAGVNSGTDALALALLATGAVRPGAGDEVITSPLSAGYTALAILNAGGVPVFADVD
                     ESTACLAPCALETALTPRTRAVVPVHIYGRMADVEGVRDFARRRGLVVVEDAAQAHGA
                     GLRGVRAGAHGGAAAFSFYPTKNLGAYGDCGAVTSDDPRVIETVKELRQGGHAAAMRG
                     RMAGRNSRLDELQAALLRVKLRRLDKWNQRRREVAETYRRLLSDAGITLPQPAAPESH
                     VFHLFVVRHTARERLRRHLCARGVETLVHYPFLLHQQTLFRSEHQRPLPVAEALAREI
                     LSLPLYPQIRDEEVREVAAAILDFKG"
     gene            complement(2440..>2758)
                     /locus_tag="VD968_09725"
     CDS             complement(2440..>2758)
                     /locus_tag="VD968_09725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14706.1"
                     /translation="DDALGTQRRYSLPVLAGRMKAAGFKITRATYANSFLLPLAAVRR
                     LLLKRLGVADSGSDVKPLPPSLARLNSLFTRALIAEARLLRAGRNLPAGLSAVCVAEK
                     EKG"
BASE COUNT          435 a          948 c          939 g          436 t
ORIGIN      
        1 gcgctgacag tgcttgcgag ctacgtcgca gtccggcaca tgcgcgtcac gaggacgcac
       61 cttttgcagg cgaaggcgtg ccttgcattt ctaaacgtcg ccccgggggc gtgcctcggc
      121 gagaaggttc ttgagaacgt cccggcgctg cgggcatggg cgaacaggct cgacgggatg
      181 ggcttcctgc gcccgggcct cctgaagagc ggccgcgtga gtgagttcgc tgacgacgaa
      241 caggcggcgc ccgcctcgca cggaacgttc gagattacag acgcgggcga cggcacatac
      301 acagcccagg ggacggccac gctcgcgcgg cgcggcgagc ccgcggacgc cgtcgccctc
      361 gcctacgagg atggcgcggg cgaggctcac gtcttcgcgc tggcggagat cgagggagcg
      421 tggacgattt acggaagcct gcggcagttc agcccgcgcc ggtacgtccg ctggcggaag
      481 gctttcgcgg cgggcgagct accgccgcag gcggtcgcgc tctccgcatg ggctttcgac
      541 gcggagacgg gcagcgccca aaggatcggc ggcacacgcc cctttcgaag ggccgaatga
      601 acgagactgt tcagaccgcg cagcgccccg cgataagcat cttcttcccc gcttacaacg
      661 acgcgggctc aatcgccctg ctcgtcgagc gagcgcacga gactctcgaa tcgctggccg
      721 gtgacttcga ggtcatcgtc gtcaacgacg ggagcaccga ctctacgcag ggggtattgg
      781 acgagctggc ccgccgtcgc cccgccttgc gcgtcatccg ccacgagcga aaccgcggct
      841 acggcggcgc tctccgttca ggcttcgcgg cggccacgaa ggagttcgtc ttctacacgg
      901 acggcgacgg gcagtacgac gtgcgcgagt tggaaaagct cgtccctctc ctgactgaag
      961 gcgttgacat cgtcaacggc tataagttaa aacgcgccga cgacgcgagc cgtaaggtca
     1021 tcggcgccgc gtacaaccgc ctggcgcacc ttcttttcag aatccccgtg agggacgttg
     1081 actgcgactt ccgcctaatc aggcggcgcg cccttgagcg cgtgcgcctg acctccacga
     1141 gcggcgtcat atgcgtcgag ctagtgcaca agctttgcgc cgcgggcagc cgcttcgcgg
     1201 aggcgccggt tcaacactac ccgcgcgagc acggccgctc gcagtttttc acggcgcggc
     1261 gcgtggcgcg aacggcgctc gacctgctcc ggctctgggt taaactcgtc gtgctgaagc
     1321 gcgcctgatg ccagtaccgt ttctagattt gagaagacag cacgaggagg tcgcctccga
     1381 ggcgttagaa gccgtcgggc gcgtcctcgc ctccggctcc tacgtgctgg gccgcgaggt
     1441 cgaagccttc gaggcggagt gggccgcgta ctgcggcgtg cgcgccgcgg ctggcgtgaa
     1501 cagcggcacg gacgcgctcg ctctcgctct cttagcgacc ggcgccgtga ggccgggcgc
     1561 gggcgacgag gtcatcacat cgcccttgag cgcgggctac actgcgctcg cgattctaaa
     1621 cgctggcggc gtccccgtct tcgcggacgt tgatgagagc accgcttgcc tcgccccctg
     1681 cgcgctcgaa acggcgctca cgccgcgcac tcgggccgtc gtccccgtcc acatctacgg
     1741 ccgcatggcc gacgtggaag gcgttcgcga cttcgcgcgg cggcgcggcc tcgttgtcgt
     1801 cgaggacgcg gcgcaggctc acggcgcggg gcttcggggc gtgcgcgcgg gcgctcatgg
     1861 cggcgccgcg gcattcagct tttacccgac gaaaaacctg ggcgcctacg gcgactgcgg
     1921 cgccgtcact tccgacgacc cgcgcgtcat cgagacggtt aaggaactaa gacagggtgg
     1981 gcacgcggcg gcaatgcgcg ggcgcatggc ggggcggaac tcgcggctcg acgagttgca
     2041 ggccgctctg ctgcgcgtca agctcaggcg ccttgacaag tggaaccagc gccggcgcga
     2101 agtcgcggag acttaccggc gtctcctctc ggacgctggc atcaccttgc cgcagccggc
     2161 cgcgcccgag tcgcacgtct tccacctctt cgtcgtgcgc cacacggcgc gcgagcgcct
     2221 gcgccgtcac ctctgcgcgc gcggcgtcga gacgctggta cactacccct tcctcctcca
     2281 ccagcagacg ctcttccgaa gcgagcacca acggccgctc cccgtcgccg aagccctcgc
     2341 ccgggaaatc ctctcgctcc cgctctaccc gcaaatccgc gacgaagagg tgcgcgaggt
     2401 cgcggccgcg attctcgact tcaagggctg agatttcatt cagcccttct ccttttcggc
     2461 tacgcagacg gcggagaggc cagcgggcaa gttccggccg gcgcggagca gtcgcgcttc
     2521 ggcgatgaga gcgcgcgtaa agagactgtt gagccgcgcg agcgacggcg gcaagggctt
     2581 cacgtccgag cccgagtcgg ctacgccgag ccgcttgaga agcagtcgcc tcaccgccgc
     2641 gagcggcagg aggaaggagt tcgcgtaggt cgcccgcgtg attttaaatc ccgcggcttt
     2701 catcctcccg gcgagcacgg gcaggctgta ccggcgctgc gtgccgagcg catcgtcg
//
LOCUS       DASPKR010000357        11713 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_826363, whole genome shotgun sequence.
ACCESSION   DASPKR010000357 DASPKR010000000
VERSION     DASPKR010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11713)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11713
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_826363"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VD968_09730"
     CDS             <1..406
                     /locus_tag="VD968_09730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14707.1"
                     /translation="REPLTSGASMSAYLAANAYFRHPDLFSGTIPMSGSYDVRSWFDG
                     YHDDNVYYNNPVEYLPNLNDDYYLPRLRRARAIVILSGQGAYEAPERSRELSAILHAK
                     QIPHTLDIWGPDVNHDWPWWRKMLPYWLNRLL"
     gene            complement(497..4189)
                     /locus_tag="VD968_09735"
     CDS             complement(497..4189)
                     /locus_tag="VD968_09735"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choice-of-anchor Q domain-containing protein"
                     /protein_id="HYE14708.1"
                     /translation="MPYPAPRPSGESPVKTFHLRTLLRLAVVCAALYLTYGAFAAVVA
                     GADVTAPGDPVVGVTATAGDNSSTLSNEGTSLSEYPPGQSPDKAIDNDATAGSKYLNF
                     AETGSGLIVTALTNGPQTVVSGFRVATAEDAPERDPVTVTLEGTNDPGATETFNSAWT
                     LLYSGPSGLSTDPGRNTFGTQINFTNTTAYRSYRFLVTGVRNAAAANSMQFSELELIG
                     STKTVIVSGADVTTPNDPHMGVAATPGSNTSTAATQGFSLSQYPPGQTPDKAFDDVVT
                     PPVNKYLNFGETNVGLIITAQTKGPQTVVTGLRLATAEDFPDRDPVTVVLEGTNDEDA
                     WATLNSTWTQIYSGASGLGTDPGRSTFGPQQNFANSTPYRSYRLLVTAVRNGATVGAM
                     QFSEVELIGSTFLTPQTYTVNSLADTVDAQGCDATNCTLREAVAAANTNPGDDTINFS
                     VTGTISLGTVGDNTFGPSALLVTSNITITGPSGDDGVTIARDAAAAPDRLRLFYVAPA
                     GNLTLENLTLSGGRALGGSSDGGGGGAGLGGAIVNAGTLVLRRSTLANNAAQGGSGGA
                     GFNGTEGGGGLGGDATGGTGGPPNGGAPGAAGGFGGGGGATGSEGSAGGFGGGGGSGG
                     SSSVGSDGGFGGGSGNGSGAGGSPGYGGAQGFGSRGAGGGGAGFGGAVFNYGGSVTVV
                     NSTIANNSALAPGEGFNSDPKGYGGGLFNLNGTVIFTNSTVAHNAASDGGGAVFNLGS
                     GGEATQGGPALPVAQGSVTLNNTILSNSTNGEATPAAVSDYFSETTNGGSVASAGTSN
                     IIQSNPNSGGFAGSHSEANPLLVGTSPADNGGPTDTFALQLTSPAIDQAEPATGVTTD
                     QRGSPRPMDIGSTPNAGGGDGSDIGAFELVVADMEITKRDSQDPVGVGSSFTYTLRVY
                     NRGPAEAHNVTVADNVPAGLAVTGVSLHASSDFTGTGCSFTGNSVNCALGTMRVFDNT
                     HDGAVKKGKAIINVTVTASQLGQHTNEATVSADEADTFPNDNTGRQKTTVMGISSVEV
                     THDSVPGGSACQKPTLKVTLTGVAPFDTFVEVSDGLAATTNVPGSSAPLLLRIPQGQS
                     SARLAIQTQGVAAEQSGQVAAAFGTSSASAPLTVRPVGLRSLFVSPSSLGGGGQSIGT
                     VKLECAAGASGVEVTLKTGKPGVAKFISPSSGLSVHPLTLTLTNTDQATFTIQTFDVG
                     APTAVNVSATANGTTKNARLDVTPSP"
     gene            complement(4419..6998)
                     /locus_tag="VD968_09740"
     CDS             complement(4419..6998)
                     /locus_tag="VD968_09740"
                     /inference="COORDINATES: protein motif:HMM:TIGR02074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HYE14709.1"
                     /translation="MASKLTRPGAASYVRPPHKRRHFLRRFWLPAVLLLAIAAGGLTG
                     IVLAYGLNYSRAAEEVKSLATYRPSVVTRVYADDGETVIGEFALERRIPLRYEEMSPV
                     MKNAILAVEDARFFDHNGIDPIRIVGAVWKNVTTGSREGGSTLTQQLAKRLFLTPEQT
                     YRRKVNEWIVALQIERFYTKEQIMEMYVNNIFLGAGSYGFEAGAETYFGKEAKDLTLE
                     EAALLAGIPKAPSHLAPTVNMAAAKERRDLVLQLMAQHGFVSQAEADAAKARPIKLHE
                     TAYAPPSQHSSPVFAYPVEEIRQQLEDKYTTRVAQGGLTVYSTINVAAQKEAYEALRR
                     GLREYDRGRGWRSNYQVVGTLNPDGSVTVTPQQLAGYRHPDWFAEKYEVGQYVMGLVT
                     KVDQARNEATVRFGHYEAAVTAKDMGWSGRQPRSEFKVGYVCEFKLKEIDEAAGKFKV
                     DLSQVPAVGGAILTINARNGEIVAMVGGYDFYVNKFNNATQAYRQTGSAFKPFVYTAA
                     VEWGMSPDTVVSGAPLKRGSWQPHNYDGSTSHGDVPMKIALAKSLNLAAVHLLDMVGI
                     QTGAQMVRRFGITQPMAPYLPSALGATEVPLVEMVSAYSAFANKGVRHEKHLIRRVVD
                     RDGVTLEEWERTTFKVMSEYVALTVADMMRGVTSGGGTAPQASAVGHPVAGKTGTVND
                     HTDVWFIGYTPTYVTGVWMGYPERKKSLGSGFTGGRGALPIWVDFMKDFLKDKPKEQF
                     EKPPKMPEDIRELYLQRMREMAEERSAFMSSVAKEAGNRMAPAIMIEPNLEQITLPPA
                     IGEGLDSSPADDSKKGDGAAAPRVAPRDDEGDTPPPPSAPQRKAADPDPPKKKGKKGT
                     DEP"
     gene            7214..7608
                     /gene="ssrA"
                     /locus_tag="VD968_09745"
     tmRNA           7214..7608
                     /gene="ssrA"
                     /locus_tag="VD968_09745"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            7711..8589
                     /gene="murI"
                     /locus_tag="VD968_09750"
     CDS             7711..8589
                     /gene="murI"
                     /locus_tag="VD968_09750"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HYE14710.1"
                     /translation="MSRELPIGIFDSGVGGLTVYRALHARLPTERYVYLGDTARVPYG
                     TKSLSTVERYAVENARFLEARGIKLLVVACNTASALALPAVRASVRVPVVGMIGPGAR
                     AAVRVAGRGRVGVIATESTIKSGAYRRAIKELEPETEVVERACPLFVALAEEGWAETD
                     VARTVAEEYLADLRGERAPGALVLGCTHYPILRGVIQEAVGAGVTLIDSGEAAAREVE
                     EAIEREGLRRSVTQQLRDLRAAGAHERYLCDDLDHFYVTDAAERFARVAERFLGSAPR
                     RLEAVEVWGQDELQTL"
     gene            8570..9325
                     /gene="rph"
                     /locus_tag="VD968_09755"
     CDS             8570..9325
                     /gene="rph"
                     /locus_tag="VD968_09755"
                     /inference="COORDINATES: protein motif:HMM:TIGR01966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HYE14711.1"
                     /translation="MSFKPSSETFARTDGRRAEELRAVRITPSYMPYAEGSALIELGQ
                     TRVVCTATLDERVPQFRRGTGKGWLTAEYAMLPRATQQRTQRETGRGGPSGRTHEIQR
                     LIGRSLRAVTNLSLLGERTITVDCDVLQADGGTRTASITGAYVALALACRRLLRENRL
                     TRLPFTGEVAAVSVGIVEGAPLLDLKYDEDSRAEVDMNVVCTGDGRFVELQGTAEGEP
                     FTREQMAELLALSRVGLETLFAAQRAAVEAAGA"
     gene            9408..10424
                     /locus_tag="VD968_09760"
     CDS             9408..10424
                     /locus_tag="VD968_09760"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14712.1"
                     /translation="MALAKFRGRSLTPAAPAPLLLWLLVAFALPSGASAQGIGSHRGE
                     IGGTGGNRVIQGQITSPLGSLPDTRVRITLDIPSAGSRSAVADEEGNFTFSNLGNGSH
                     RLTVDAGPMYEPATESVFIEGEKPTYIVAIYLRPKPEANPAFAGVPKQAIDLFMKAQD
                     AARKKDSKKAAEHLSAAVAAHPQFAIAHKELGVQFLAAGQVDKAVESLQTAVKLAPGD
                     PHAQLNYGIALAQKKDFAAAEPPLREALKKMDSSAQGHMYLGVALIGLKRHDEAEAEL
                     QRAVKLGGDRMGAAHKYLGGIYWGRGDLRRAAEELETYVKLMPKAPDAEKIKATAKDL
                     RAKL"
     gene            10504..11019
                     /locus_tag="VD968_09765"
     CDS             10504..11019
                     /locus_tag="VD968_09765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14713.1"
                     /translation="MRRITPALACVIALLFSAGAARAQDGFTHEADEFTFELPSQTWR
                     PVPRSDTAHTHTEFIYGDRLDGYLRVRKSMLESGESLSQMARREQDTKLRFVAGFVGG
                     KEERFAGRLNGIVVGYEYTNAGKAMAGRIYYLQADNRTVYALHFTGLGEKLARIQNQT
                     DSIARSFKLKQ"
     gene            11100..11513
                     /locus_tag="VD968_09770"
     CDS             11100..11513
                     /locus_tag="VD968_09770"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016279 - protein-lysine
                     N-methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein"
                     /protein_id="HYE14714.1"
                     /translation="MRLASGLEIRKSPIDGKGCFATAFFPARKKIAEYAGERIRNREV
                     ARRVRERRKHRICDVGGGWSLDGSRGGNGTHYINHSCRPNSYMRITRGHLLFFALRDI
                     PPGEEITCDYVTTHHPDTYRCRCKSPSCRGTINKK"
     gene            complement(11527..>11713)
                     /locus_tag="VD968_09775"
     CDS             complement(11527..>11713)
                     /locus_tag="VD968_09775"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE14715.1"
                     /translation="DQPRVWEKFYRVARDGHAKEEESTGLGLSFVREVVEQHGGQVSL
                     ESEVGRGSKFSFTLPRL"
BASE COUNT         1832 a         3942 c         4027 g         1912 t
ORIGIN      
        1 gcgcgagccg ctcacctcgg gcgcgagcat gagtgcctac ctcgccgcca acgcctactt
       61 ccgccaccca gatttgttct ccggcacgat cccgatgagc gggagctacg acgtgcgctc
      121 gtggttcgac ggctaccacg acgacaacgt ctattacaac aacccagtag agtacctgcc
      181 gaacctgaac gacgactact acctgccgcg cctgcggcgc gctcgcgcca tagtcatact
      241 ctcggggcag ggcgcctacg aggcgccgga gcgcagccgc gagctctccg cgatactgca
      301 cgccaagcag attccgcaca cgctcgacat ctggggtccc gacgtgaatc acgactggcc
      361 ctggtggcgc aagatgctgc cctactggct gaaccgcctg ctctgagcgg ggctacgaga
      421 caaagacgaa ggggtgagcc gtaaaggaaa gtcgcttcct ttacggctca tcccttcgag
      481 ctttgagcgc cgcgcctcag ggcgacggcg tcacgtccag gcgcgcgttc ttcgttgtgc
      541 cgttcgccgt ggcgctgacg ttaacggcgg tcggcgcccc cacgtcgaag gtctgtatcg
      601 tgaaggtcgc ctggtcggtg ttcgtcagcg tgagcgtcag cgggtggacc gacagccccg
      661 acgaggggct tatgaacttc gccacccccg gcttgccggt cttcagagtc acctccacgc
      721 ccgaggcccc cgccgcgcac tcgagcttca ccgtgccgat gctctgcccg ccgcccccca
      781 gcgaggaggg cgacacgaac aggctgcgca ggcccacggg cctgacagtg agtggcgccg
      841 aagcgctcga cgtgccgaag gcggccgcca cctgccccga ctgctccgcc gcgacgccct
      901 gagtctgtat cgccagcctc gccgaggact ggccctgtgg tatgcgcagc agtagcggcg
      961 cggacgagcc ggggacgttg gtcgtggcgg cgaggccgtc cgagacttct acgaaagtgt
     1021 cgaagggcgc gacgcccgtg agcgtcacct tgagcgtggg cttctggcag gccgagccgc
     1081 cggggacgga gtcgtgcgtg acctccacgg aggagatacc catcaccgtg gtcttctgcc
     1141 ggcccgtgtt gtcgttcggg aacgtgtcgg cctcgtcggc cgagacggtg gcctcgttgg
     1201 tgtgctgccc caactgcgag gcggtgacgg tgacgttgat gatggccttg cccttcttga
     1261 ccgcaccgtc gtgtgtgttg tcgaagacgc gcatcgtgcc gagcgcgcag ttgaccgaat
     1321 tgccggtgaa cgagcagccc gtcccggtga agtcgctaga ggcgtggagg cttacgcccg
     1381 tgacggcgag ccccgccggg acgttgtcag cgaccgtgac gttgtgggcc tcggccgggc
     1441 cgcggttata gacgcgcagc gtgtatgtga aggaagagcc gacgccgacg gggtcttgcg
     1501 agtcgcgctt cgttatctcc atgtcggcga cgaccagctc gaaggcgccg atgtccgagc
     1561 cgtcgccgcc gcccgcgttc ggggtcgaac cgatgtccat cggccgcggc gagccgcgct
     1621 ggtcggtcgt gacgccggtg gccggctcgg cctggtctat ggcggggctc gtgagctgca
     1681 aggcgaaggt gtcggtcggc ccgccgttgt cggcgggcga ggtgcctacg agcaaagggt
     1741 tggcctcgct gtgcgagcca gcgaagccgc cggagttggg gttcgactga atgatgttgg
     1801 aagtgccggc gctcgccacc gagccgccgt tcgtcgtctc ggagaagtag tcgctcacgg
     1861 cggcgggcgt ggcctcgccg ttagtggagt tggagaggat ggtgttgttg agcgtaacgg
     1921 aaccctgcgc gacggggagc gccggccccc cttgcgtggc ctcgccgccg gagccgaggt
     1981 tgaagaccgc cccgccgccg tcagacgccg cgttgtgcgc gaccgtcgag tttgtgaaga
     2041 tgaccgtgcc gttgaggttg aagaggccgc cgccgtagcc cttcgggtcg ctgttgaagc
     2101 cttcgccggg ggcgagggcg gagttgttgg cgatggtgct gttgacgacc gtgacgctgc
     2161 cgccgtagtt gaagacggcg ccgccgaagc cggcgccgcc gccgccggcc cctcggctcc
     2221 cgaagccctg ggcgccacca tagccggggc tcccgccggc gccgctgccg ttgccgctgc
     2281 cgccgccgaa accgccatca gagcctacgg agctcgaccc gcctgagccg ccgccgccgc
     2341 cgaagccgcc ggcgctgccc tcggagccgg tggcgccgcc ccccccgccg aagccgcccg
     2401 cggcgcccgg cgcgccgccg ttgggcgggc cgccggtgcc gccggtggcg tcgccgccga
     2461 gaccgccgcc gccttcagtg ccgttgaacc cagcgccgcc ggagccgccc tgcgcggcgt
     2521 tattagcgag ggtcgagcgg cgcagcacga gcgtgccggc attgactatt gcgccgccca
     2581 ggcccgcccc gccgccgccg ccgtcgctgc taccccccag agccctgccg ccgctcaggg
     2641 tcaggttctc gagcgtcagg ttgccagcgg gcgccacgta gaagaggcgc aggcggtcgg
     2701 gcgccgccgc cgcgtcgcgc gcaatcgtca cgccgtcgtc gcccgagggg cccgtgatgg
     2761 ttatgttgct ggtgaccagg agggccgacg ggccgaaggt gttgtcgccg acggtgccga
     2821 ggctgattgt gcctgtgacg gagaaattga tggtgtcgtc gccggggttc gtgttggccg
     2881 cagcgacggc ctcgcgcagc gtgcagttcg tcgcgtcgca cccttgagcg tccaccgtgt
     2941 cggcgagcga gttaacggtg taggtctgcg gcgtcaggaa ggtcgagccg ataagctcca
     3001 cttcactgaa ctgcatcgcg ccgaccgtgg cgccgttcct cacagccgtt acgagcagcc
     3061 ggtaggagcg gtagggcgta gagttggcga agttctgctg cggcccgaag gtgctccgcc
     3121 cggggtctgt cccgagcccc gacgcgccgc tgtagatttg cgtccacgtc gagttaagcg
     3181 tagcccatgc gtcctcgtcg tttgtgcctt cgagcacgac cgtgacgggg tcgcggtcgg
     3241 ggaagtcctc ggcggtggcg agccggagcc ccgtgacgac cgtctgcggc cccttagtct
     3301 gcgccgtgat gatgagcccg acgttcgtct caccgaaatt caggtacttg ttgaccgggg
     3361 gcgttactac gtcatcaaac gccttgtcgg gcgtctgccc cggcgggtac tggctgagcg
     3421 agaagccctg ggtggcggcc gtcgaggtgt tgctccccgg cgtggcggcc acccccatgt
     3481 gcgggtcgtt cggcgtggtc acgtccgccc cgcttacgat gacggtcttg gtcgagccta
     3541 tcagctccaa ctccgagaac tgcatcgagt tggcggccgc cgcgttcctc acgcccgtca
     3601 cgaggaagcg gtaggagcgg taggcggtcg tgttcgtaaa gttaatctga gtgccgaagg
     3661 tgttgcggcc ggggtctgtc gagagccccg acgggccgct gtaaagaagc gtccaagctg
     3721 agttgaacgt ctcggtcgcg cccgggtcgt tcgtcccttc gagcgtgacc gtcacggggt
     3781 cgcgctcggg ggcgtcctcg gcggtggcga cgcggaagcc gctgacgacg gtctgcggcc
     3841 cgttcgtcag cgccgtaact atcagccccg agcccgtctc ggcgaagttg aggtacttgc
     3901 tgccggccgt cgcgtcgttg tcaatcgcct tgtcgggcga ctgccccggc gggtactcgc
     3961 tcagcgacgt gccttcgttc gatagcgtcg aggagttgtc cccggcggtc gccgtcacgc
     4021 ccacgacggg gtcgccggga gcagtcacgt ccgcgcccgc cacgaccgcg gcgaaggcgc
     4081 cgtaagtcag gtagagcgca gcgcagacga ccgcgaggcg cagcagcgtt cggaggtgga
     4141 aagtcttgac aggggattcg ccggacgggc ggggcgcggg gtagggcatg ggggaatgct
     4201 ccttcgggat agttgagcgc cgggacgggg agtgtgggtc ggctacccct cgggctgaag
     4261 ggaacgcgtg gcgcgacgca agtcgccgtg tcggcagcgc attataggcg cgggccggcg
     4321 gtaaacacaa tcatttcagg aaggcgcgag gggaagggaa agggcgagag cgccggcgcc
     4381 ggcgctctcg ccctgatgcg tttcaatttc ggcgcgcctt acggctcgtc ggtacccttc
     4441 ttgcccttct tcttgggcgg gtcggggtct gcggccttgc gctgcggggc cgagggcgga
     4501 ggcggggtgt cgccttcgtc gtcgcgcggc gcgacgcgcg gcgccgcggc gccgtcaccc
     4561 ttcttcgagt cgtcggcggg cgacgagtcg agcccctcgc cgatggcggg cgggagcgtt
     4621 atctgttcga ggttgggctc gatcatgata gcgggggcca tgcgattgcc ggcctccttc
     4681 gccacgctcg acatgaaggc ggagcgctcc tcggccatct cgcgcatgcg ctgtaggtag
     4741 agctcgcgta tgtcctcggg catcttgggc ggcttctcga actgctcctt cggcttgtcc
     4801 ttgaggaagt ccttcatgaa gtcaacccaa atggggagcg cgccgcgccc gcccgtgaag
     4861 ccggagccga gagacttctt gcgctcgggg tagcccatcc agacgcccgt cacgtaggtc
     4921 ggcgtgtagc ctatgaacca aacgtccgtg tggtcgttga ccgtgccggt ctttcccgcg
     4981 accgggtggc cgaccgccga ggcctgcggc gccgtcccgc cgcccgaggt cacgccgcgc
     5041 atcatgtcgg ccaccgtgag cgcgacgtac tcgctcatca ccttgaaggt cgtgcgctcc
     5101 cactcttcga gcgtgacgcc gtcgcggtca acgacgcgcc ggatcaggtg cttctcgtgg
     5161 cggacgccct tgttggcgaa cgccgagtag gccgagacca tctcgaccag gggcacctcg
     5221 gtcgcgccga gcgccgaggg caggtagggc gccatcggct gcgtgatgcc gaagcgccgg
     5281 accatctgcg cgcccgtctg tatgccgacc atgtcgagca ggtgcacggc cgccaggttc
     5341 agagacttgg cgagcgcaat cttcatcggc acgtcgccgt ggctggtgga gccgtcatag
     5401 ttgtgcggct gccagctgcc gcgcttcagg ggcgcgcccg agacgaccgt gtcgggggac
     5461 atgccccact cgacggccgc cgtatagacg aagggcttga aggccgagcc ggtctgccgg
     5521 taggcctgcg tggcgttgtt gaacttgttt acgtaaaagt cgtagccgcc gaccatcgcg
     5581 actatctcgc cgttcctggc gttgatggtc agtatggcgc cgccgacggc cggcacctgc
     5641 gacaagtcaa ccttaaattt ccccgcagcc tcgtctatct ccttgagctt gaactcgcag
     5701 acgtagccga ccttgaactc gctgcgcggc tgccggcccg accagcccat gtccttcgcg
     5761 gtcaccgcgg cctcgtagtg gccgaagcgc accgtcgcct cgttcctcgc ctggtcaact
     5821 ttggtgacga gccccatcac gtactggccg acctcgtact tctccgcgaa ccagtcgggg
     5881 tggcggtagc cggcgagctg ctgcggcgtg accgtgacgg agccgtcggg gttgagggtg
     5941 cctacgacct ggtagttcga gcgccagccg cggccgcggt cgtactcgcg aaggccgcgc
     6001 cgcagcgcct cgtaagcctc cttctgagcg gcgacgttga tggtcgaata gacggtcagg
     6061 ccgccctgcg cgacgcgggt cgtgtacttg tcctcgagct gctggcgaat ctcctctacg
     6121 gggtaagcga agacggggct cgaatgctgt gacgggggag cgtaggccgt ctcgtgcagc
     6181 ttgatgggcc gggccttcgc tgcgtcggcc tcggcctgcg agacgaagcc gtgctgcgcc
     6241 atgagctgga ggacgaggtc gcggcgctcc ttcgcggccg ccatattgac ggtgggcgcg
     6301 agatggctgg gcgccttggg tatgcctgcg agcagggcgg cctcttcgag cgtgaggtct
     6361 ttggcctcct tgccgaagta ggtctccgcc cccgcctcga agccgtagga gcccgcgccg
     6421 aggaagatgt tgttgacgta catctccatg atctgctcct tcgtgtagaa gcgctcgatc
     6481 tggagagcca cgatccactc gttgactttg cggcggtagg tctgctcggg cgtaaggaac
     6541 agccgcttgg cgagctgctg cgtcagggtc gagccgccct cgcggctgcc cgtcgtcacg
     6601 ttcttccaga cggcgcctac gatgcgtatc gggtcaatgc cgttgtggtc gaagaagcgc
     6661 gcgtcctcga cggctaggat cgcgttcttc atcacgggcg acatctcctc gtagcgcagc
     6721 ggtatgcggc gctctaaggc gaactcgcct atgacggtct cgccgtcgtc ggcatagacg
     6781 cgcgtcacca cgctcgggcg gtaggtggcg agcgacttaa cctcctcggc ggcgcgcgag
     6841 tagttgaggc cgtatgccag cacgatgccc gtgaggccgc ccgccgctat cgcgagcagc
     6901 agcacggccg gcagccagaa gcggcgcagg aagtgcctgc gcttatgcgg cgggcgcacg
     6961 taagaagcgg cgccggggcg cgtcagtttt gaagccatct aagaaacatc tccttcgggg
     7021 agacgcgccc tgtgcgggcg cgtttgatgc cggactgact cgtgcggagc cgaaaccacg
     7081 ggcgcccgga attatagccc agcgcggggc gcgggcgcga gcatgagagc gcggcagccg
     7141 ccttgtgaag ccggcggccg ggcatctata atgcgcgcct cgcatcaaat tagatgcgcg
     7201 gatagttctt tgagggggcg attggtctcg acaggggctc ggatcgccgc acgggtgcat
     7261 gcagggcctt ctatgcggct ctttaaaaag cgtagaaaac ccaaactgcc aactctaacg
     7321 aattggccct agcagcctaa gttaccttag gcccatagct agcatcccgc cgcaagtcgc
     7381 tcaagcgcgc ggagtggggt gtgactcagt tgagctggcg cgctccgtcc gcccgggcgg
     7441 agcgggcgag ataaaaccgg gctagcctgc gtcggggtct tcgccgtttc actgacccgc
     7501 cgcgggcgaa ctcgccggag agagaccggc agcggagaag cggctaagcg tgtagagccc
     7561 gccggcgtcg gcctttggac ccgagttcga ttctcggcgc ctccattaat caagcagggt
     7621 tttgaagcag caagccggcc cggccgggcg gtgtgataac atcgcccggc cgggccggct
     7681 ttttcgttag cgcgtggccc gccggttcgt ttgagcagag aacttcccat aggcatattc
     7741 gacagcggcg tgggcggcct gaccgtctat cgcgcgctgc acgcgcggct cccgacggag
     7801 cgttacgtct atctcggcga cacggcgcgc gtcccctacg gcactaagtc gctctcgacc
     7861 gtagagcgct acgccgtcga gaacgcgcgc ttcctcgaag cgcgcggcat aaagctcctc
     7921 gtcgtcgcgt gcaacacggc ctcggcgctg gcgctgccgg ccgtgcgcgc cagcgtccga
     7981 gtccccgtcg tcggcatgat agggcctggc gcgcgcgcgg ccgtccgcgt ggccggccgc
     8041 ggccgcgtgg gcgtcatcgc caccgagtca acgataaaga gcggcgccta caggcgggcg
     8101 attaaagaac tagagcccga gaccgaggtg gtcgagcgcg cttgcccgct cttcgtcgcg
     8161 ctcgccgagg agggctgggc ggagaccgac gtggcgcgca cggtcgccga agagtacctc
     8221 gcagaccttc gcggcgagcg ggcgccgggc gcgctcgtgc tcggctgcac gcactacccg
     8281 atactccgcg gcgtgattca ggaggccgtg ggcgcgggcg tcacgctcat tgactcgggc
     8341 gaggccgcgg cgcgtgaggt agaggaggcc atcgagcgcg agggccttcg gcgcagcgtc
     8401 acgcagcagc tcagggactt gagggcggcg ggtgcgcacg agcgctattt gtgcgatgat
     8461 ttggatcact tctacgtgac ggacgcggcc gagcgcttcg cgcgcgtggc ggagaggttc
     8521 ttgggcagcg cgccccgccg ccttgaggcc gtagaggtct ggggtcagga tgagcttcaa
     8581 accctctagc gaaaccttcg cgcgcacgga cggccgccgc gccgaggagc tgcgcgccgt
     8641 ccgcatcacg ccgagctaca tgccctacgc cgagggctcc gcgctcatag agctcggaca
     8701 gacgcgcgtc gtctgcacgg ccacgctcga cgagcgcgtg ccgcagttcc gccgcggcac
     8761 cggcaagggc tggctcacgg ccgagtacgc gatgctgccg cgcgccactc agcagcgcac
     8821 gcagcgcgag acgggccggg gcggcccctc gggccgcacg cacgagatac agcgtctcat
     8881 cggccgctcg ttgcgcgccg tcacgaacct ctctctcctc ggcgagcgca ccatcacggt
     8941 tgactgcgac gtgctccagg ccgacggagg cacgcgcacg gcctcgataa cgggcgcgta
     9001 tgtcgcgctc gcgcttgcct gccggcggct gctgcgtgag aataggctca cgcgtctgcc
     9061 cttcacgggc gaggtggccg cagtaagcgt cgggatagtc gaaggcgccc cgctcctcga
     9121 ccttaagtac gacgaagact cccgcgccga agttgacatg aacgtcgtct gcacgggcga
     9181 cggccggttc gtcgagctgc aaggcacggc cgagggcgag cccttcaccc gcgaacagat
     9241 ggccgagctg ctcgcgctct cccgcgtcgg cctcgaaaca cttttcgccg cgcagcgcgc
     9301 cgccgtcgag gcggccggcg cctgaggcga aggtcagccc ttaactcccg actgagaacc
     9361 ggttcggcgc gccaccgcgc gcaattcact acacggagtt gactatgatg gctctcgcaa
     9421 aattccgcgg gcgctccctg acgcccgccg cccccgcgcc gctcctcctt tggctgttag
     9481 tagcgttcgc cctgccctcc ggcgcctcgg cgcagggcat cggctcccac cgcggcgaga
     9541 taggcgggac gggcggcaac cgcgtcatac agggccaaat cacgagcccg ctcgggagcc
     9601 tgcccgacac gcgcgtccgc atcacgctcg acataccctc ggccggctcg cgctcggccg
     9661 tcgccgacga ggagggcaac ttcactttca gcaacctcgg caacggctcg caccgcctga
     9721 ccgtcgacgc cggccccatg tacgagccgg ccaccgagag cgtctttata gagggcgaaa
     9781 agccgaccta catcgtagcc atctacctgc gccccaagcc cgaggccaac ccggccttcg
     9841 ccggggtgcc gaagcaggcc atagacctct tcatgaaggc acaggacgcc gcccgcaaga
     9901 aggactcgaa gaaggccgcc gagcacctga gcgcggcggt cgccgcccac ccgcagttcg
     9961 cgatcgcgca caaggagctg ggcgtgcagt tcctcgccgc gggccaggtc gacaaggccg
    10021 tcgagtcgtt gcagacggcc gttaagctcg cgcccggcga cccgcacgcg cagctcaact
    10081 acggcatcgc gctcgcgcag aagaaggact tcgccgcggc cgagccgccg ctgcgcgagg
    10141 ccctcaagaa gatggacagc tcggcgcagg gccacatgta cctcggcgtc gccctcatcg
    10201 gcctgaagcg ccacgacgag gcggaggccg agctccagcg cgccgttaaa ctcggcggcg
    10261 accggatggg cgcggcccac aagtacctgg gcggcatcta ctggggccgc ggcgacctca
    10321 ggcgcgccgc cgaggagctt gagacctacg tcaagctgat gccgaaggcg cccgacgccg
    10381 agaagataaa ggcgacggcg aaggacctgc gcgccaaact ctaaccgccg ggcaacagcc
    10441 gcgagcgcgc cgacatctga ctgcgcggcg gcgagccttt catcaaggag taaaagtaaa
    10501 gccatgcgac gcatcacccc cgcactagcc tgcgtcatag ccctcctgtt cagcgccggc
    10561 gcggcccgcg cgcaggacgg gttcacgcac gaggcagacg agttcacctt cgagctgccg
    10621 tcgcagacgt ggaggcccgt gccgcgctct gacaccgcgc acacgcacac cgagttcatc
    10681 tacggcgacc gcctcgacgg ctacctgcgc gtgcgcaaga gcatgttgga gtcgggcgag
    10741 agcctatcgc agatggcgcg ccgagagcag gacacgaagc tgcgcttcgt ggccggcttc
    10801 gtcggcggca aggaggagcg cttcgccggg cgcctcaacg gcatcgtcgt gggctacgag
    10861 tacacgaacg ccggcaaggc tatggcgggc cgcatttact acctccaggc cgataaccgc
    10921 acagtctatg ccctccactt caccggcctc ggcgaaaagc tcgcgcgcat acagaaccag
    10981 accgactcca tcgcccgcag cttcaaacta aagcagtagg cggaaggcag aaagcgtaag
    11041 gcagtcaaga caagttatgt tttgactgcc ttccgccttc cgccttccgc cttctcccta
    11101 tgagactcgc ctccggcctc gaaatacgaa agtcgccgat tgacggcaag ggctgcttcg
    11161 ccaccgcctt cttccccgcg cggaagaaga tcgccgagta cgcgggcgag cgcatacgca
    11221 accgcgaggt ggcgcgccgc gtcagggagc gcaggaagca ccgcatctgc gacgtgggcg
    11281 gcggctggag cctcgacggc agccgcggcg gtaacggcac tcactacata aaccactcct
    11341 gccgccccaa cagctacatg agaatcacgc gcggccacct gctcttcttt gcgctgcgcg
    11401 acataccgcc cggcgaggag ataacctgcg actacgtcac cactcaccac cccgacacct
    11461 accgctgccg ctgcaagtcg ccctcctgcc ggggaaccat caacaaaaag tgaagggcgc
    11521 ccgccctcaa agcctcggga gcgtgaagct gaacttcgag ccgcggccga cctcggattc
    11581 gagcgatacc tgcccgccgt gctgctcgac gacctcgcgc acgaaggaga ggcccagccc
    11641 cgttgactcc tcctccttcg cgtggccgtc gcgcgccacg cggtagaact tctcccacac
    11701 gcggggctgg tct
//
LOCUS       DASPKR010000358         3044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_694429, whole genome shotgun sequence.
ACCESSION   DASPKR010000358 DASPKR010000000
VERSION     DASPKR010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3044)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3044
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_694429"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1103)
                     /locus_tag="VD968_09780"
     CDS             complement(<1..1103)
                     /locus_tag="VD968_09780"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HYE14716.1"
                     /translation="MSGAALMLLAQSLALPTGLVSAALLARWLSPAGYGVFALASVLV
                     AWVEWCIPSAFTRASTKFIAASSDPLEVGSSVLRLHLAAGVVVGAALWLAAPALASAL
                     GEASLAGAIRLYAPDVPLFAAATAHRAILTGTGRFNEVAAATAARWLVRLALMAALVG
                     AGLGVEGAVAAVVLTSLVELALLRRGARPRLFGRAGVPLRGLLAFAAPLFLASVSLRL
                     LDKLDIFALKWLGATTEEAGFYGAAQNLTFASSLIALTFAPVLLATLSHAVRDGEEAL
                     ARALSRDSMRAVLWLMPFAALAAGASGEIVGLIFGAEFGPAAVPLAPLVVGAVALLML
                     SVANTTLIAGDRPRWALAVVAPLPAAAVLGHMA"
     gene            complement(1144..2124)
                     /locus_tag="VD968_09785"
     CDS             complement(1144..2124)
                     /locus_tag="VD968_09785"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYE14717.1"
                     /translation="MRVLVTGATGFVGRHLAAALAADGERVRALARPGSGASGLERLG
                     VEVVRGDVTDPEAVSRAARDCRHVYHLAALTPRPGVGRREYLWVNTEGTKAVGLACLR
                     AGVERLVYASSSGVYGVVRRPPVDERSPTNPTSGYRESKLRGEEALRALREREGLGFV
                     AARLPGVIGRGSLSWLGLVRAVATGRFRLIGPGENYDHTCDVADTVEGLRLCARTPGA
                     DGECYLLADSRPVKVKRLVELIARELGLPAPSRRPLPAAPYRAFNALGELLYKTARVE
                     LPGVYRYSIFLAEKVLVTSKAERELGFRAKVPVEESVRATVGWYKEEGYV"
     gene            complement(2131..>3044)
                     /locus_tag="VD968_09790"
     CDS             complement(2131..>3044)
                     /locus_tag="VD968_09790"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE14718.1"
                     /translation="ETVRCLARQRYPLDRVEVILVGSREQARAWEKLYAEPAPFHSVK
                     AVAQDENHYYAMKNAGARAAGGDIVAFTDSDVRPEESWLSSAVGAIEAGADVAVGLSL
                     FRGGRRGPGDALMQAAASVTWGWVVGKGAGAGGACEPVGFMDHNVVLRARALRRNPYE
                     TGNGRVCTSTLLFKSLKEDGARFALPPGQRAAHHFTWGYWLRKLHFRYGYEVYALRRM
                     DETYPNRWIMRARVLEPLATMCWHMMLDVPRWLRFSRLLGLGPARRAALLPVVAALSL
                     VARGAEMAGMCATLVAPSAMRAWAEKV"
BASE COUNT          498 a         1157 c         1048 g          341 t
ORIGIN      
        1 aaggccatgt ggccgagaac ggccgcggcg gggagcggcg ccacgacggc cagcgcccaa
       61 cgcgggcggt cgcccgcgat gagggtcgtg ttcgcgaccg agagcatcag cagcgccacc
      121 gcgcccacga cgagcggcgc gagcggcacg gcggcagggc cgaactccgc gccgaatatc
      181 agccccacga tctcgccaga cgctcccgcc gctagcgccg caaacggcat gagccacagc
      241 acggctcgca tcgaatcgcg cgagagagcg cgcgcaaggg cctcctcgcc gtcacgcacg
      301 gcgtggctca gggtggcgag cagcacgggc gcgaacgtga gagctatgag cgaggatgcg
      361 aaggtcaggt tctgcgccgc gccgtagaag cccgcctcct cggtcgtcgc gcccagccac
      421 ttgagcgcga agatgtcgag cttgtccaaa agcctcagcg acacggacgc aaggaagagc
      481 ggcgcggcga aggcgagcag cccccgcaag ggaaccccgg ctcggccgaa caggcgcggc
      541 cgcgcgccgc ggcgaagcag cgccagctcg acgagcgaag tgagcacgac tgcggcgacc
      601 gcgccctcga ccccgagccc cgccccgacg agcgcggcca tgagcgccag gcgcactagc
      661 cagcgcgcgg cagtcgccgc cgcgacttcg ttgaacctgc ccgtccccgt caggatcgcc
      721 ctgtgcgccg tcgcggccgc gaacagcgga acgtccggcg cgtagagcct tatcgcgccc
      781 gcgagcgacg cctcgcctaa agcggaggcg agcgcgggag cagccagcca cagcgcggcg
      841 ccgaccacca cgcccgccgc caagtgcagc cgcagcacgg acgagccgac ttcgagcggg
      901 tcgctcgagg cggctatgaa cttcgtcgag gcgcgcgtga acgccgaggg gatgcaccac
      961 tccacccacg ccaccagcac ggacgcaagc gcgaagacgc cgtagccggc cgggctgagc
     1021 caccgcgcca gaagcgccgc gctcacgagc cccgtcggca aagcgagcga ctgcgccagc
     1081 agcatgagcg ccgcgccgct catcatccgg cgcccgtgtc gtgtcgcgag agaagacgcc
     1141 aagttaaacg tagccctctt ctttgtacca gccgacggtc gcgcgcacgc tctcctctac
     1201 ggggactttc gcgcggaagc ccagctcgcg ctccgccttc gacgtgacga gcaccttctc
     1261 ggccagaaag atcgagtagc gatagacgcc cggcagctct acgcgcgccg tcttgtatag
     1321 cagctcgccc agcgcgttga aggcgcggta aggcgcggcc ggcagcggcc gccgcgaagg
     1381 ggcgggcaat cccagctcgc gcgcgatgag ctcgacgagg cgtttgacct tgacgggccg
     1441 gctgtcggcg agcaggtaac actcgccgtc cgcgccgggc gtgcgagcgc agagccgcag
     1501 cccctcaacg gtgtcggcca cgtcgcaggt gtggtcgtag ttctcgcccg gcccgatgag
     1561 ccggaagcgc cccgtcgcga ccgcgcggac gaggcccagc cagctcaacg agccgcggcc
     1621 gatgacgccc ggcagccgcg ccgcgacgaa cccgagccct tcgcgctcgc gcagcgcccg
     1681 aagcgcctcc tcgccgcgca gcttcgactc gcggtagccc gaggtcgggt tcgtgggcga
     1741 gcgctcgtca acgggcgggc gcctcacgac gccgtaaact cccgagctgc tcgcatagac
     1801 caaccgctcg acgcccgcgc gcaggcaggc gagccccacg gccttcgtgc cttccgtgtt
     1861 gacccagagg tactcgcggc ggccgacgcc cggccggggc gtcagcgcgg cgaggtgata
     1921 gacgtggcgg cagtcacggg cggcacgcga gaccgcttcc gggtcggtca cgtcgccgcg
     1981 cacgacctcg acgccgagcc gctcgagccc cgaggcgccc gagccgggcc gggcgagggc
     2041 gcgcacgcgc tcgccgtcgg ccgcgagcgc cgccgcgagg tgacggccca cgaagccggt
     2101 cgcgcccgtg actaaaactc tcatcccctc tcagaccttc tcggcccacg cgcgcatcgc
     2161 cgacggcgcg accagagtgg cgcacatgcc cgccatctcc gccccgcgcg cgacgagcga
     2221 aagcgccgcg accacgggca gcagcgccgc gcgccgcgcg ggcccgagcc ccagcaggcg
     2281 cgagaacctg agccagcgcg gaacgtcgag catcatgtgc cagcacatcg tcgccagcgg
     2341 ctccaaaacc cgcgcgcgca tgatccagcg gttcgggtag gtctcgtcca tgcgccttag
     2401 cgcatagacc tcgtagccgt agcggaagtg cagcttccgg agccagtatc cccaggtgaa
     2461 gtggtgcgcg gccctctggc ccggcggcag cgcgaagcgc gcgccgtcct ccttcagcga
     2521 cttgaagagc aaggtcgaag tgcagacgcg cccgttcccc gtctcgtaag ggttgcggcg
     2581 cagcgcacgc gcgcgcagca cgacgttatg atccatgaag cccacgggct cgcacgctcc
     2641 gcccgcgccg gcgcccttgc ccacgaccca cccccatgtg acggacgcgg ccgcctgcat
     2701 cagcgcgtcg ccggggccgc gccgcccgcc ccggaagagg ctgaggccca cggccacgtc
     2761 ggcgccggcc tctatcgccc cgaccgccga cgagagccac gactcctcgg gccgcacgtc
     2821 cgagtctgtg aaggcgacga tgtcgccgcc cgccgcgcgt gcgcctgcgt tcttcatggc
     2881 gtagtagtgg ttctcgtcct gcgccacggc cttgacggag tggaagggcg cgggctccgc
     2941 gtagagcttc tcccacgccc gcgcctgctc gcggctcccg acgaggatga cctccacgcg
     3001 gtcgagcggg tagcgctgac gtgcgagaca gcgcacggtc tcac
//
LOCUS       DASPKR010000359         4290 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1600983, whole genome shotgun sequence.
ACCESSION   DASPKR010000359 DASPKR010000000
VERSION     DASPKR010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4290)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4290
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1600983"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..325
                     /locus_tag="VD968_09795"
     CDS             <1..325
                     /locus_tag="VD968_09795"
                     /inference="COORDINATES: protein motif:HMM:NF024545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HYE14719.1"
                     /translation="FLLAELNPSVSAAVKDLKAGGVSEPIKLDEGYLILRVNERDDAY
                     KENFVRGAITQERQEKEREEYLRKLRQDAWIKPAENYKDVIQPLLDKDRQSGKPETAK
                     KQGEK"
     gene            396..683
                     /locus_tag="VD968_09800"
     CDS             396..683
                     /locus_tag="VD968_09800"
                     /inference="COORDINATES: protein motif:HMM:NF013633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein"
                     /protein_id="HYE14720.1"
                     /translation="MRLDQFLRASRLVVRRTAAQELCEAGGVEVNGLAARSSRAVRPG
                     DRLTVRRRGRALTVLVKALPDSKQVSKATAPSLYEVISDVRADDDYDLTGL"
     gene            897..1952
                     /locus_tag="VD968_09805"
     CDS             897..1952
                     /locus_tag="VD968_09805"
                     /inference="COORDINATES: protein motif:HMM:NF010539.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HYE14721.1"
                     /translation="MNILSSIFTDDLAIDLGTVNTLIYAPDRGIVLNEPSAVAIHKYT
                     GEVLSVGSEAYKMLGREPKDVEVFRPVRNGNIDNFEAAEKMLKSFITRANGSSHRRSH
                     MVVGVPGSSTSLEQRSVRDAARDAKATRVDLVDEGLCAALGAGLGADDDERAHLVVDI
                     GGGTTNIAIIACGAVVSSTSLTAAGNAMDQAICDYVRAKYEMQLGERAAERLKKELGS
                     NGGAKMEIVGKQLTDGLAKAVEISAEEVREALEPVVSEIVAGARRAIEESKPDVTADI
                     YQTGLVLTGGGALLDGMAERLQKELRLHVAVADDPLAAVALGAGRLLSDKERLHRAAI
                     REDVPVWQAEQALVVNW"
     gene            complement(2018..2794)
                     /locus_tag="VD968_09810"
     CDS             complement(2018..2794)
                     /locus_tag="VD968_09810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14722.1"
                     /translation="MTETTANRARNRALLRFVVLPTIFLTVALLGGVRVGAPAGELEF
                     VPPPLVTLVLALMLLALFVRGRAVVLGAWLSAEHPTLVNVSHALTLGALFFASAQAFN
                     SVLPAAGLLRWVFSFFFLWALWQSQFSAFDARRPLRSLASLFGTAFLLKHVLLASLYA
                     PEGGWLKRIAGALLEGATLGTLDGRPTAPATGYVSFFTLALYVCGLVLLPPDPSEDGA
                     GETAMAPAAGDFVEAIRRLPPAEREAAREALLAEDFQERK"
     gene            complement(2791..3291)
                     /locus_tag="VD968_09815"
     CDS             complement(2791..3291)
                     /locus_tag="VD968_09815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14723.1"
                     /translation="MRERLIQWVGVGWTCLFAAFVVWLYATAPRSVSEVATRASVAAG
                     TYEVDRARFDAARSLFLREQYAAARDEWGRADPARRDARTQFYIAYAFYRQGWGRVYS
                     DDALFRQGLEAASLAIQLSPEGALNVEDPELKIHSAAELKAEIEQGLARTADDFNPFK
                     VFRERK"
     gene            3363..3914
                     /locus_tag="VD968_09820"
     CDS             3363..3914
                     /locus_tag="VD968_09820"
                     /inference="COORDINATES: protein motif:HMM:NF027592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4920 domain-containing protein"
                     /protein_id="HYE14724.1"
                     /translation="MKTFLAAAALAASFALAAQAQDHTPQHGHDKQGGHGHDAAGGEK
                     MTAAEALKAGGGRIRRGEAIGSSPAAAFADVLKEPEKFAGRKVTVEGVVERVCQKQGC
                     WVQIAPEAGSAQSVRVTFDHKFFVPKDADKMKFRAEGTFSVKYLTGDEATHLEKEGAS
                     LKRDKDGEAPEVTFLATGVELWK"
     gene            3957..>4290
                     /locus_tag="VD968_09825"
     CDS             3957..>4290
                     /locus_tag="VD968_09825"
                     /inference="COORDINATES: protein motif:HMM:NF013380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HYE14725.1"
                     /translation="MKPFKIRDVEISPPLVLSPMAGVTDVPFRALLKRRGGIGLTVSE
                     FISVEGLTRNNPKSRRQMRFFDYERPFAVQIFGGQPERMRMAAEMAEEVGADILDVNC
                     GCPAPKVVK"
BASE COUNT          802 a         1432 c         1453 g          603 t
ORIGIN      
        1 gttcctgctc gccgagctaa acccctcggt cagcgcggcc gtcaaagacc tcaaggccgg
       61 cggcgtctcc gagccgatta agctggacga gggctacctg atcttgcgcg tcaacgagcg
      121 cgacgacgcc tacaaggaga acttcgtgcg cggcgccatc acgcaggagc ggcaggagaa
      181 ggagcgcgag gagtatctgc gcaagctccg tcaggacgcg tggataaagc ccgcagagaa
      241 ctacaaggac gtgatccaac cgctcctcga caaggacagg cagagcggca agcccgagac
      301 ggccaagaag cagggcgaga agtaacaggt aaatttaacc cgcacgaagc ccggagccgg
      361 ccggctccgg gcttcgcgct tttaaaaact ctctcatgcg cttagaccag ttcctcagag
      421 ccagccgcct cgtcgtccgc cggacggccg cgcaagagct ttgcgaggcg ggcggcgtcg
      481 aggtcaacgg gctcgccgcg cgctcatcgc gcgccgtccg ccccggcgac cgcctgacgg
      541 tgcgccgccg cggccgcgcc ctcaccgtgc tcgtcaaggc cctccccgac tcgaagcagg
      601 tatctaaggc caccgccccc tcgctctacg aagtcataag cgacgtgagg gccgacgacg
      661 actacgacct gacggggctt taacccctcc ctccgtttta taaccgttcg cctttcaagc
      721 gctcggctca ggccgggccg gcggctttgt aacgaatcgg gacgcggccg ggcgcggggg
      781 cggcgggaat ctccgaaatc cgcgcgggcg ggccatctgg aacgaagttt gcgatgcgac
      841 tgtgagaacc ttaaaggatt cctcggtgga gtgcatcaga acaagaggga agctttatga
      901 acatcctgag cagcatcttc acggacgatc tggcgattga cctcggcacg gtcaacacgc
      961 tcatctacgc ccccgaccgc ggcatcgtcc tgaacgagcc ttcggcggtg gcgattcaca
     1021 agtacacggg cgaggtgctc tccgtcggct ccgaagccta caagatgctc ggccgcgagc
     1081 cgaaggacgt tgaagtcttc cggcccgtgc gcaacggcaa catagacaac ttcgaggccg
     1141 ccgagaagat gctcaagtcc ttcatcacgc gcgccaacgg cagctcgcac aggcgcagcc
     1201 acatggtcgt gggcgtcccc ggctcctcga cctctctgga gcagcgctcg gtcagggacg
     1261 ccgcgcgcga cgccaaagcc acgcgcgttg acctcgttga cgaggggctg tgcgccgcgc
     1321 tcggcgccgg cctcggcgcc gacgacgacg agcgcgccca cctcgtcgtt gacataggcg
     1381 gcggcacgac caacatagcc atcatcgcct gcggcgccgt cgtctcctcg acgagcctga
     1441 cggccgccgg caacgccatg gatcaggcca tctgcgacta cgtccgcgcc aagtacgaga
     1501 tgcagctcgg cgagcgcgcg gcggagcgcc tgaagaagga gctcggctcg aacggcggcg
     1561 cgaagatgga gatagtcggc aagcagttga cggacgggct cgccaaagcc gtggagattt
     1621 ccgccgagga ggtgcgcgag gcgctcgagc ccgtcgtctc cgaaatagtg gccggcgcgc
     1681 gccgcgcgat tgaagagtcg aagccggacg tgacggccga catctaccag acggggcttg
     1741 tgctcaccgg cggaggcgcc ctgctcgacg gcatggccga gcggctacag aaggagctgc
     1801 gcctgcacgt cgcggtggcc gacgacccgc tcgccgccgt cgcgctcggc gccgggcgcc
     1861 tgctctccga caaggagcgg ctgcaccgcg cggccatacg cgaggacgtt cccgtctggc
     1921 aggccgaaca ggcgctcgtc gtcaactggt aagcgccgtc agccaaaaaa ctgaagaggg
     1981 aggacgagag gcagcgtggc tctcgtcctc cctcttttta cttccgctct tgaaagtctt
     2041 cggcgagaag cgcctctcgc gcggcctcgc gctcagccgg gggcagccgg cggatggctt
     2101 cgacgaagtc gccggccgcc ggggccatgg ccgtctcgcc cgccccgtcc tccgaagggt
     2161 cgggcgggag cagcacgagc ccgcagacgt agagcgcgag cgtgaaaaag gagacgtagc
     2221 ccgtagccgg ggcggtcggg cggccgtcga gcgtgccgag cgtggcgcct tcgaggagcg
     2281 cgcccgctat ccgcttaagc cagcccccct cgggtgcgta gagcgacgcc agcagcacat
     2341 gcttgagcag gaaggccgtc ccgaatagcg aggcgaggct gcgcaggggc cggcgcgcgt
     2401 cgaaggccga aaactggctc tgccagagcg cccaaaggaa gaagaacgag aagacccagc
     2461 gcagcaggcc cgcggccggc agcacggagt tgaaagcctg cgccgacgcg aagaagagcg
     2521 cgccgagcgt tagcgcgtgc gagacgttca cgagggtcgg atgttcggcc gacagccacg
     2581 cgcccaaaac caccgcccgc ccgcgcacga agagcgcgag cagcatcaac gcgagcacga
     2641 gcgtcacgag cggcggcggg acgaactcga gctctcccgc gggcgccccc acgcgcacgc
     2701 cgcccagcag cgcgaccgtc aggaagatgg tcggcagcac gacgaatcgc aagagcgccc
     2761 ggttcctcgc gcggttagcg gtcgtctctg tcacttcctt tcgcggaaaa ccttgaaggg
     2821 gttgaagtcg tcggccgttc gggcgaggcc ctgttcgatt tcggccttga gttccgccgc
     2881 cgagtggatt ttaagctccg ggtcttccac gttgagcgcg ccttcgggcg agagctgtat
     2941 ggcgaggctc gcggcttcga gcccctgccg gaagagcgcg tcgtcgctat agacgcgccc
     3001 ccatccctgg cggtagaagg cgtatgcgat gtagaactgc gtgcgcgcgt cgcgccgcgc
     3061 ggggtctgcc cggccccact cgtcgcgcgc ggcggcgtac tgctcgcgca ggaagagcga
     3121 gcgcgcggcg tcgaagcgcg cgcggtcaac ctcgtatgtg cccgcggcga cgctggcgcg
     3181 cgtggcgacc tccgagacgc tgcgcggcgc cgtcgcgtag agccacacga cgaaggccgc
     3241 gaataggcac gtccacccga cgccgaccca ctggatgagc ctctcacgca ttgctataat
     3301 ctggcgtcag cacgaaacgg cgttacactt aactacggcc gaaaggataa ccgatttccg
     3361 ccatgaaaac attcctagca gccgcggcgc tggccgcctc cttcgcgctc gccgcgcaag
     3421 cgcaggatca cacgccccag cacggccacg acaagcaggg cggccacggc catgacgccg
     3481 cgggcggcga gaagatgacg gcggccgagg ccctgaaggc cggcggcggc cgcatacgcc
     3541 gcggcgaggc cataggctcg tcgcccgcgg ctgccttcgc cgacgttctg aaggagccgg
     3601 agaagttcgc cggccggaag gtcacggtcg agggcgtcgt cgagcgcgtc tgccagaagc
     3661 agggctgctg ggttcagata gcgcccgagg ccggctcggc gcagagcgtc cgcgtaacct
     3721 tcgaccacaa gttcttcgtc ccgaaggacg ccgacaagat gaagttccgc gccgaaggca
     3781 ccttctccgt caagtacctg accggggacg aggcgacgca cctcgaaaag gagggcgcca
     3841 gcctcaagcg cgacaaggac ggcgaggcac cggaagtcac cttcctcgcc acgggcgtcg
     3901 agctttggaa ataaagaagc tgaaggctga cagcttattg gtgatagccg ccgagtatga
     3961 agccgttcaa gattcgcgac gttgagataa gcccgccgct ggtgctgtcg ccgatggcgg
     4021 gcgtgacgga cgtgcctttc cgcgcgctgc tgaagcggcg cggcggcatc ggcctgacgg
     4081 tctcggagtt catctcggtc gaggggctga cgcgcaacaa cccgaagtct cgaaggcaga
     4141 tgcgcttctt cgactatgag cggccgttcg ccgtccagat tttcggcggc cagcccgagc
     4201 gcatgcgcat ggccgccgag atggcagagg aggtcggcgc cgacatactc gacgttaact
     4261 gcggctgccc ggccccgaag gtcgtcaagc
//
LOCUS       DASPKR010000360         3412 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1729997, whole genome shotgun sequence.
ACCESSION   DASPKR010000360 DASPKR010000000
VERSION     DASPKR010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3412)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3412
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1729997"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..699)
                     /locus_tag="VD968_09830"
     CDS             complement(<1..699)
                     /locus_tag="VD968_09830"
                     /inference="COORDINATES: protein motif:HMM:NF014654.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HYE14726.1"
                     /translation="MTTGEPQDSNRPAEEATVASAAEGAQISVAGARPEIVADSGGEE
                     LKLVLGEFAGPLDLLLYLIRQEQVSIYDIPIARITDEYLRYLRMMQGMDITVASDFLV
                     MAATLIEIKSRMLLLRDPTLSAEEQEGDDPRRELVERLLEHQKFKAAAEMLWSRATVE
                     RAVYTRAPLETDKNNPEISAGAFDLLRVFQEILARKKEEVLLEIERDEVTMAEMLERL
                     RNMIFSTGELNLRDF"
     gene            complement(696..1688)
                     /gene="trpS"
                     /locus_tag="VD968_09835"
     CDS             complement(696..1688)
                     /gene="trpS"
                     /locus_tag="VD968_09835"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HYE14727.1"
                     /translation="MSKRIFSGAQPTGNLHIGNYLGAIRNWVALQRDYESIYCVVDLH
                     AITVPQDPKHLAAKTREVARIYLAAGVDPKASLIFVQSDVPEHSELAWVLNCVVRISE
                     LERMTQFKDKAKKQRENVLAGLLTYPALMAADILLYQTDLVPVGQDQKQHLELTRDIA
                     ERFNRDYGETFRLPDGFIPKVGAKIMALDDPAKKMSKSDENINGSITLVDDPDTVRRK
                     FKRAVTDSGTEIRFDESRPAITNLLSIYQLLTGKSAADTEAHFEGKGYAQLKSELADV
                     TIEFLRPFQERMRAIDDEELTRTLREGAEKARAIASVTMRDVRERMGIVGGIKS"
     gene            complement(1704..2378)
                     /locus_tag="VD968_09840"
     CDS             complement(1704..2378)
                     /locus_tag="VD968_09840"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HYE14728.1"
                     /translation="MPQTDLLGQLIIYIVVLLLAISAHEAAHAWMSYKFGDDTAYLLG
                     RVTLNPVAHTDPIGTLLIPVINFIGAGAGVFVPLIGWGKPTPVNPLRWRKKDLANVMV
                     SIAGILANLIIALIAFFALKIVLRSGIAEEGGSLEAVGEPVKLLLWMGLSLNLSLAIF
                     NLLPVPPLDGSKALYTILPEGARASLDSFEQVPMLSSIVLIGLIYFGVVSAIMRPVQL
                     FVLSLL"
     gene            complement(2467..>3412)
                     /locus_tag="VD968_09845"
     CDS             complement(2467..>3412)
                     /locus_tag="VD968_09845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14729.1"
                     /translation="SRPRACQVVFDDLQSRPVGLAPWRVLATVPEEHEGGEAEVVLAG
                     AEGRRTAPARVTVGRKLAEDLHIVANPAFDPDDGSLYVTRSGSRGQRMPVSLFRISPG
                     GEIMAINGEVANPTAIAFDAVGQMYVTSRLDGVVYHVTPFHEVKPFASKLGVATGLAF
                     DATGRMYVGDRTGTIHRVNGRGESDVWALLDPSVAAYHLAFGPDGALYVTGPTVSSYE
                     SVLRIDEDGRASVFFRGLGRPQGLAFDREGNLYVAASYRARRGVVRIPSGGGEAELFV
                     AGMNVVGLAFGPAGEMVVATNDSVFSLPLGIKGTLLRQ"
BASE COUNT          550 a         1103 c         1148 g          611 t
ORIGIN      
        1 gaagtcgcgc aggttcagct cgcccgtcga gaagatcatg ttgcggaggc gttcgagcat
       61 ctcggccatc gtcacctcgt cgcgctcgat ttcgagcagg acttcttcct tcttgcgcgc
      121 gaggatttcc tggaagacgc gcagcaggtc gaacgcgccc gccgagattt ccgggttgtt
      181 cttgtcggtt tcgagcgggg cgcgcgtgta gaccgcgcgc tcgacggtgg cgcgcgacca
      241 gagcatttcg gccgcggcct tgaacttctg gtgttcgagc aggcgctcga ccagctcgcg
      301 gcgcgggtcg tccccctcct gctcctccgc gctcagcgtc gggtcacgca gcaacagcat
      361 acgcgacttg atctcgatga gcgtggcggc catgacgagg aagtcgctgg cgaccgtgat
      421 gtccatgccc tgcatcatgc gcaggtagcg caggtactcg tccgtgatgc gggcgatggg
      481 gatgtcgtag atgctgacct gctcctgtcg tatgaggtag agcaggaggt ctaaaggccc
      541 cgcgaactcg ccgaggacta gcttaagctc ctcgccgccg ctgtcggcga caatctcggg
      601 ccgcgcgccc gcgacgctta tctgcgcgcc ctcggctgcg ctcgccacgg tcgcctcctc
      661 ggccggcctg ttcgagtcct gcggctcgcc tgtcgtcaac tcttaatccc cccgacaatg
      721 cccatgcgct cgcgcacgtc gcgcatcgtc acggacgcga ttgcgcgggc cttctcggcg
      781 ccctcgcgga gcgtgcgggt cagctcttcg tcgtcaatcg cgcgcatgcg ctcctggaac
      841 gggcgcagga actctatcgt cacgtcggcg agctccgatt tcaattgcgc gtagcccttg
      901 ccctcgaaat gcgcctccgt gtcggcggcc gacttgcctg tgagcagttg gtagatggag
      961 agcaggttcg tgattgcggg gcgcgactcg tcgaagcgaa tctcggtgcc tgagtcggtg
     1021 acggcccgct tgaatttgcg gcgcacggtg tcggggtcgt caacgagggt gatgctgccg
     1081 tttatgttct cgtccgactt cgacatcttc ttcgccgggt cgtctagcgc cattatcttc
     1141 gcgccgacct tcgggatgaa gccgtccggc aggcggaacg tctcgccgta gtcgcggttg
     1201 aagcgctcgg ctatgtcgcg cgtcagctcc aggtgctgct tctgatcctg cccgacgggc
     1261 acaaggtctg tctggtagag cagaatgtcg gcggccatca gcgccgggta ggtcagaagg
     1321 cccgccaaca cgttctcgcg ctgcttcttc gccttgtcct tgaactgcgt catgcgctcc
     1381 agctccgaga tgcggacgac gcagttgagc acccacgcga gctccgagtg ctccggcacg
     1441 tccgactgca cgaagatgag cgaagccttc gggtcaacgc cggccgcgag gtatatgcgc
     1501 gcgacctcgc gggtcttggc cgcgaggtgc ttcgggtctt gcgggacggt gatggcgtgc
     1561 aggtcaacga cgcagtagat gctctcgtag tcgcgctgga gcgccaccca gttacgtatg
     1621 gcgccgaggt agttgccgat gtggaggttg cccgtgggct gcgcgccgct gaaaattcgt
     1681 ttcgacatct ctctcttgga acctcacagg agcgacagca cgaagagctg gacgggccgc
     1741 atgatggccg acaccacgcc gaagtagatg agcccgatga ggacgatgga gcttagcatc
     1801 ggcacctgct cgaaggagtc gagagacgcg cgcgcgccct cgggcagtat tgtgtagagc
     1861 gccttgctgc cgtcgagcgg cgggacgggg agaaggttga atatagcgag cgacaaattc
     1921 aggctgagcc ccatccagag caggagcttg acgggctcgc cgacggcttc gaggctcccg
     1981 ccctcctcgg cgatgccgct gcgcagcaca atctttagcg cgaagaaggc tatcagcgcg
     2041 attatcaggt tcgcgagtat ccccgctatc gagaccatca cgttcgccaa gtccttcttg
     2101 cgccaccgca gcgggttgac cggcgttggc ttgccccagc ctatgagcgg gacgaagacg
     2161 cccgcgcccg cgccgatgaa gttgatgacg gggatgagca gcgtgccgat ggggtctgtg
     2221 tgtgcgaccg ggttcagcgt gacgcggccg agcaggtagg ccgtgtcgtc tccgaacttg
     2281 taagacatcc aggcgtgcgc cgcctcgtgc gccgagatgg cgagcagcag caccacgatg
     2341 tagatgatta gttgccctag aaggtcagtc tgaggcatcc cacttgttcc cgaaacctgc
     2401 ggcccacgcg aagccagaaa agtagcacaa agaagtggcc ggtagccagc agggccggcc
     2461 cgcgccctac tgtctgagca gcgtcccttt tatccccagc gggaggctga agacggagtc
     2521 gttcgtggct actaccatct cgccggccgg gccgaaggcg aggccgacga cgttcatgcc
     2581 ggcgacgaac agctcggcct cgccgccgcc cgagggtatg cgcacgacgc cccgtcgcgc
     2641 gcggtacgag gccgcgacgt agaggttccc ctcgcggtcg aaggcgagcc cctgcgggcg
     2701 gcccaagccc cggaagaaga cgctcgcgcg cccgtcctcg tcaatgcgca gcaccgactc
     2761 gtagctcgaa actgtcggcc ccgtcacgta gagcgcgccg tctggcccga acgccaggtg
     2821 gtacgcggcc acggaggggt ctagcagcgc ccacacgtcg gactctcccc ggccgttcac
     2881 gcggtgaatc gttcctgtcc tatcgcctac gtacatgcgc ccggtcgcgt cgaaggccag
     2941 ccccgtggcg acgcccagct tgctggcgaa cggcttgacc tcgtggaagg gcgtgacgtg
     3001 atagacgacg ccgtcgagcc ggctggttac gtacatctgc ccgacggcgt cgaaggctat
     3061 ggccgtaggg ttcgcgacct cgccgttgat agccatgatc tcgccgcccg gcgagattcg
     3121 gaagagcgag acgggcatgc gctggccgcg cgagccagag cgcgtcacgt agagcgagcc
     3181 gtcgtcgggg tcgaaggcgg ggttggcgac gatgtgcagg tcttcggcga gcttgcgccc
     3241 gaccgtcacg cgcgccggcg cggtgcgccg gccttcggcg cccgcgagca cgacttcggc
     3301 ctcgccgccc tcgtgctcct ccggcacggt cgcgagcacg cgccacgggg cgaggccgac
     3361 ggggcgggac tgtaagtcgt cgaacacgac ctggcacgcg cgcggccgcg ac
//
LOCUS       DASPKR010000361         2577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1861164, whole genome shotgun sequence.
ACCESSION   DASPKR010000361 DASPKR010000000
VERSION     DASPKR010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2577)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1861164"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..403)
                     /locus_tag="VD968_09850"
     CDS             complement(<1..403)
                     /locus_tag="VD968_09850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14730.1"
                     /translation="MKTKILSLFALATAALGFSLTAAQTGKPQGAAADVKTSALELPA
                     ETRLRNVRQLTFGGENAEAYFSGDGRRLIFQSKREGRACDQIYTMRSDDGSDLRMVST
                     GAGATTCSYYFPDGKKILYASTHLASRECPPP"
     gene            complement(534..1619)
                     /gene="serC"
                     /locus_tag="VD968_09855"
     CDS             complement(534..1619)
                     /gene="serC"
                     /locus_tag="VD968_09855"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HYE14731.1"
                     /translation="MTERIFNFSAGPAVLPVPVLERAREEMLSLPGVGMSVMEISHRS
                     KTFQAILDSATVGMRELLGIPEGYHVLFLQGGASLQFSMIPINFLPEGRSADYVITGS
                     WGKKALKEAKKQGAVSVAADMADSRYNRVPSQDELKLDSGAAYVHITSNETIEGVEWK
                     EDPQVGDVPLVCDASSDICSRPVDVSKYALIYAGAQKNLGPSGVTLVILRDDMLGRIP
                     DGLHTMLDYRTHTQNNSLYNTPNTWGIYILDLVCQWVKEQGGLEAMHRRNQEKARKIY
                     DVIDSTDFYRGHAAPEARSLMNVTFRLPSEELEKKFASEATAQGLDGLKGHRSVGGIR
                     ASIYNAFPPEGVEALTQFMREFERTNG"
     gene            complement(1641..>2577)
                     /locus_tag="VD968_09860"
     CDS             complement(1641..>2577)
                     /locus_tag="VD968_09860"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYE14732.1"
                     /translation="NCPGKNSVAVAELALALILALDRRVADNVAELRAGRWNKKEFSK
                     ARGLLGRTLGLIGTGQIGQEVITRARAFGMRVVAWSRSLTQERAIVLGVERVESPLDV
                     ARASDVVSVHVALKPETRGLINSDFFDAMRDGALFVNTSRGEVVDQEALRRAMRDKNI
                     RAGLDVFASEPASAAGEFTDDISKEPNLYGTHHIGASTDQAQEAIAAETVRIIRTFKE
                     TGRVPNVVNLAARTPATHTLVVRHRDRPGVLAAVLGPLRAANINVQEMENIIFEGAEA
                     AVARINLDAAPPADTLERLKAENEDIIELSLLEIK"
BASE COUNT          386 a          796 c          907 g          488 t
ORIGIN      
        1 gcggcggcgg gcattcgcgc gaggcgaggt gcgtcgaggc gtagagtatt tttttgccgt
       61 cggggaagta gtaagagcat gtggtcgcgc ccgcgccggt cgagaccatc cgaaggtcag
      121 acccgtcgtc cgagcgcatc gtgtaaatct ggtcgcacgc gcgcccctcc cgcttcgact
      181 ggaaaattag cctccgcccg tcgcccgaaa agtaagcctc cgcgttctcg ccgccgaagg
      241 tcaactgccg tacgttgcgc agccgcgtct ccgcgggcag ctcaagggct gaagtcttaa
      301 cgtccgcggc tgcgccctgc ggcttaccag tctgagcggc cgtgagcgag aacccgagcg
      361 ccgcggtggc gagggcgaag agggacaaga ttttcgtttt catgctgatc agaacaggaa
      421 cggggccggc gcgctcccgt ggagagacgt gcgggcgcgc cgtggcgata ctttaacgcg
      481 gcgggagggc cgtcgccaaa gggcggcggg tggggcgccg tccttcgtcg cccctagccg
      541 ttggtgcgct cgaactcgcg catgaattgg gtgagggctt cgacgccttc gggggggaag
      601 gcgttgtaga tggaggcgcg tatgccgccg acggagcggt ggcccttgag gccgtcgagc
      661 ccttgtgcgg tcgcctccga ggcgaacttt ttctccaact cttccgacgg caggcggaag
      721 gtgacgttca tcagagaacg cgcctcgggg gcggcgtggc cgcggtagaa gtcggtcgaa
      781 tcaatcacgt cgtaaatctt gcgggccttc tcctggttgc ggcggtgcat ggcctccaag
      841 ccgccctgct ccttcaccca ctggcacacc aagtcgagta tgtatatgcc ccaggtgttc
      901 ggcgtgttgt agagcgagtt gttctgcgtg tgtgtgcggt agtctagcat ggtgtgcagg
      961 ccgtcgggta tgcggccgag catgtcgtcg cgcagtatga cgagcgtgac gcccgaaggc
     1021 ccgaggttct tctgcgcgcc cgcgtatatg agcgcgtact tagacacgtc aacggggcgc
     1081 gagcagatgt cggacgaggc gtcgcagacc agaggcacgt cgcccacctg cgggtcttcc
     1141 ttccactcga cgccctcgat ggtctcgttc gaggtgatgt gcacgtaggc cgcgcccgag
     1201 tcgagcttca gctcgtcctg cgaggggacg cggttgtagc ggctgtcggc catgtctgcc
     1261 gccacgctca cggcgccctg cttcttagcc tccttcaggg ccttcttgcc ccagctcccc
     1321 gtaatcacgt agtcggcgct tcggccctcg ggcaggaagt tgatggggat catggagaac
     1381 tgaaggctcg cgccgccctg taggaagagg acatggtagc cttcggggat gccgagaagc
     1441 tcgcgcatgc cgaccgtggc gctgtcgaga atggcctgga aggtcttcga gcggtggctt
     1501 atctccatca cgctcatccc gacgcccgga aggctcagca tctcctcgcg cgccctctca
     1561 aggacgggga cgggaagcac ggccggcccc gcgctgaagt tgaagattct ctctgtcatg
     1621 gtttgatccc tctcggatga ctactttatt tcgagcaggc tcagttcgat tatgtcctcg
     1681 ttctctgctt tcaggcgttc gagcgtgtcg gcggggggcg cggcgtcgag gttgatgcgc
     1741 gcgacggcgg cctctgcgcc ctcgaagatg atgttctcca tctcctgcac gttgatgttc
     1801 gcggcgcgca gggggccgag caccgcggcg agcacgccgg ggcggtcgcg gtggcgcacg
     1861 acgagcgtgt gcgtggccgg cgtgcgcgcg gcgaggttga cgacgttggg gacgcggccg
     1921 gtctccttga acgtgcggat gatgcggacg gtctcggcgg cgatggcctc ctgcgcctgg
     1981 tcggtcgagg cgccgatgtg gtgcgtgccg tagaggttcg gctctttgct tatgtcgtcg
     2041 gtgaactcgc ccgccgccga cgccggctcc gaggcgaaaa cgtcgaggcc ggcgcggatg
     2101 tttttgtcgc gcatggcgcg gcgcagcgcc tcctggtcaa ccacttcgcc gcgcgaggtg
     2161 ttgacgaaga gggcgccgtc gcgcatggcg tcgaagaagt cggaattgat gagcccgcgc
     2221 gtctcgggct tcaaggcgac gtggacgctc accacgtctg aagcgcgagc gacatctagc
     2281 gggctctcaa cgcgctcgac gccgaggact atcgcgcgct cctgcgtcag gctccggctc
     2341 caggcgacga cacgcatgcc gaacgcccgc gcgcgcgtga tgacctcctg cccgatctgt
     2401 cccgtgccga tgaggccgag cgtgcggccg agaagcccgc gcgccttcga gaattctttc
     2461 ttgttccagc ggcccgcgcg cagctccgcg acgttgtcgg ctacccggcg gtcgagcgcg
     2521 aggatgagcg cgagcgcaag ctcggcgacg gccacggaat ttttgccggg gcagttc
//
LOCUS       DASPKR010000362         3166 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1730750, whole genome shotgun sequence.
ACCESSION   DASPKR010000362 DASPKR010000000
VERSION     DASPKR010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3166)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3166
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1730750"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1246
                     /gene="sppA"
                     /locus_tag="VD968_09865"
     CDS             <1..1246
                     /gene="sppA"
                     /locus_tag="VD968_09865"
                     /inference="COORDINATES: protein motif:HMM:TIGR00706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HYE14733.1"
                     /translation="KNAPERFTRKEMSEGERETLTSLLDEIYGRYVSAVAEARRKSAE
                     DIKALIDNAPHNAQDAQRAGLIDGAAYREEVEGELKKRLGYKDDEKLRKVTAGDYRRV
                     SPESLGLNQGERVALIFAAGPIVPGSSSDDSFGGEQMIGSDTVVKALNDARDDKTVKA
                     IVLRVDSPGGSMYPSDLIWKAVEEAKKKKPVVISMSDLAASGGYYVSMGANKIVAHPL
                     TLTGSIGIYAYKPVMAGFYDWIGVTSEYMLRGKNAGIFRETEKFTDEERKKFQSVLDR
                     AYWNEFLPKVAQGRRFANVEAVHAIAQGRVWTGAQARERGLVDEFGGLDRAVEVAKEL
                     AGIPADKGVQRVIFPAPRSFFQQLFQEEPDASVRAQMQQRQAVLNSLPKEMRRAARYA
                     SMFERFGQTDALTLVPFEMKIE"
     gene            complement(1329..2624)
                     /gene="serS"
                     /locus_tag="VD968_09870"
     CDS             complement(1329..2624)
                     /gene="serS"
                     /locus_tag="VD968_09870"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003218092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HYE14734.1"
                     /translation="MLDLNYVRANLGRVRAGLEARGFPTSALDDFEALDAERRRAIAE
                     SDALNARRNSSSREIGALMKEGRREEAEARRGEVGELKERIAQLDRERDEAERRMEEL
                     LSGVPNVPHESVPVGADESANVEARQWGEAPRFDFEPQDHVEIGARLGILDLERAAKI
                     ASARFAILRGAGARMERALINFMLDVHTREHGYEETLPPFIVNRDSLFGTGQLPKFEQ
                     ELFKLEDERGLYLIPTAEVPVTNIHRGEILDGAELPMKFVSYTPCFRSEAGSYGRDTR
                     GVIRQHQFDKVELVKLSAPENSYEELEGLTRDAEAILQKLGLHYRVVTLSTGDMGASA
                     AKTYDIEVWLPSQNAFREISSCSNFEAYQARRAQIRFRRAGGSKPEFVHTLNGSGLAV
                     GRTWLAILENYQRPDGSVVIPEALRPYMGGEEKIEAPEK"
     gene            complement(2637..>3166)
                     /locus_tag="VD968_09875"
     CDS             complement(2637..>3166)
                     /locus_tag="VD968_09875"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HYE14735.1"
                     /translation="FTIINDKSTDDSNKLGAIGDLNLVLEAAGIDDDVIVVAGDNLFS
                     HGLKEFGEFCREKGAPVLAVYDVGDLDEIKKYNAIEVGEDGRITFFEEKPAEPKSTLT
                     GIALYFYPRSALPLIKQYIAEGNNPDQPGRLVQWMYQRTPFYTWKVPGLWYDVGSKET
                     LEEANRIFARPDIRG"
BASE COUNT          535 a         1045 c         1043 g          543 t
ORIGIN      
        1 caagaacgcg cccgagcgct tcacgcgcaa ggagatgtcc gagggcgagc gcgagacgct
       61 cacctcgctg ctcgacgaga tttacgggcg ctacgtctcg gcggtcgccg aggcgcgtcg
      121 caagtcggcc gaggacatca aggcgctcat agacaacgcg ccgcacaacg cgcaggacgc
      181 gcagcgcgcc ggcctcattg acggcgccgc ctaccgcgaa gaggtcgagg gcgagcttaa
      241 gaagcggctg ggctacaagg acgacgagaa gctgcggaag gtaacggcgg gggactaccg
      301 ccgcgtcagc cccgagtcgc tcggcctcaa ccagggcgag cgcgtcgcgc tcatattcgc
      361 cgcagggccc atcgtgccgg gcagctccag cgacgactca ttcggcggcg agcagatgat
      421 aggctccgac accgtcgtca aggccctgaa cgacgcgcgc gacgataaga ctgtcaaggc
      481 gatagtgctg cgcgttgaca gccccggcgg ctcgatgtac ccgtccgacc taatctggaa
      541 ggccgtcgag gaggcgaaga agaagaagcc ggtcgtgatc tccatgagcg acctcgccgc
      601 ctcgggcggc tactacgtct ctatgggcgc caacaagata gtcgcacacc cgctgacgct
      661 caccggctca ataggcatct acgcctacaa gcccgtcatg gccggcttct acgactggat
      721 aggcgtgact agcgagtaca tgctgcgcgg caagaacgcc ggcatattcc gcgagaccga
      781 gaagttcacg gacgaggagc gcaagaagtt ccagtccgtc ttagaccgcg cctactggaa
      841 cgagttcctg ccgaaggttg cgcagggtag gaggttcgcg aacgtcgagg ccgtccacgc
      901 gatagcgcag ggccgggtct ggacgggcgc gcaggccagg gagcgcggcc tcgttgacga
      961 gttcggcggg ctcgaccgcg ccgtcgaggt cgcgaaagag ctggccggca tcccggccga
     1021 caagggcgtg cagcgcgtaa tcttccccgc gccgcgcagc ttcttccagc agctcttcca
     1081 ggaagagccg gacgcgagcg tccgcgccca gatgcagcag cggcaggccg tcctcaactc
     1141 gctccccaag gagatgcgcc gcgccgcccg ctacgcctcc atgttcgagc gcttcggcca
     1201 gacagacgcg ctcaccctcg tgcccttcga gatgaagatc gagtagaaca gaaggcagaa
     1261 ggcggaaagc gggaggcggt cagcacccgg tgagcgttct tgaccgcctt ctgctttccg
     1321 ctttctacct acttctctgg ggcttctatc ttctcctcgc cgcccatgta gggcctgagc
     1381 gcttccggta taacgaccga gccgtcgggc cgctggtagt tctcgagaat ggcgagccac
     1441 gtgcggccga cggcgaggcc ggagccgttt aaggtgtgca cgaactcggg cttcgagccg
     1501 cccgcgcggc ggaaacgaat ctgggcgcgc cgggcctggt acgcctcgaa gttcgagcac
     1561 gaagagattt cgcggaaggc gttctggctc ggcagccaga cctctatgtc gtaggtcttg
     1621 gcggcgctcg cgcccatgtc gcccgtcgag agcgtcacga cgcggtagtg aaggccgagc
     1681 ttctgcaaga tggcctcggc gtcgcgcgtc agcccctcca actcctcgta tgaattttcg
     1741 ggcgccgaga gcttgacgag ctcgaccttg tcgaactggt gctggcgtat gacgccgcgc
     1801 gtgtcgcgcc cgtaggagcc ggcctcggag cggaagcagg gcgtgtagga gacgaacttc
     1861 atgggcagct cggcgccgtc gagaatctcg ccgcggtgta tgttcgtcac cgggacctcg
     1921 gccgtcggga tgaggtacag gccgcgctcg tcctctagct tgaacagttc ttgctcgaac
     1981 ttcgggagct ggcccgtgcc gaagagcgag tcgcggttga cgataaaagg cggcagcgtc
     2041 tcctcgtagc cgtgctcgcg cgtgtgcacg tcgagcatga agttgatgag ggcgcgctcc
     2101 atgcgcgcgc ccgcgccgcg caggattgcg aagcgcgcgc tggcaatctt ggccgcgcgc
     2161 tcgaggtcga gtatgccgag ccgcgcgcct atctcgacgt gatcctgcgg ctcgaagtcg
     2221 aagcgcggcg cctcgcccca ctggcgggct tccacgttcg ccgactcgtc cgcgcccaca
     2281 gggacggact cgtgcggcac gttcgggacg cccgacagca actcttccat cctccgctcg
     2341 gcctcgtcgc gctccctgtc tagctgcgcg atgcgctcct taagctcgcc gacctcgcct
     2401 cgccgcgcct cggcctcctc cctgcgcccc tccttcatca gcgcgcctat ctcgcggctc
     2461 gaagagttgc gccgcgcgtt gagggcgtcg gactcggcta tggcgcgcct gcgctcggcg
     2521 tcgagcgcct cgaagtcgtc gagcgcggac gtggggaagc cgcgcgcctc caaccccgcg
     2581 cgcacgcgcc ccaggttcgc cctcacgtag ttcaaatcga gcatctgttc agtctctcag
     2641 ccccggatgt ccggcctcgc gaaaatgcgg ttggcctctt ccaaagtctc cttcgagccc
     2701 acgtcgtacc agagccccgg caccttccac gtgtagaagg gcgtgcgttg gtacatccac
     2761 tgcacgaggc ggccgggctg gtcggggttg ttgccctcgg ctatgtactg cttaatcagc
     2821 ggcagcgcgg agcgggggta gaagtagagg gcgatgcccg tcagcgtgct cttcggctcg
     2881 gccggcttct cctcgaagaa ggttatgcgc ccgtcctcgc cgacctcaat ggcgttgtac
     2941 ttctttatct catcgaggtc gcccacgtca tagacggcga gcacgggcgc gcccttctcg
     3001 cggcagaact cgccgaactc cttgaggccg tggctgaaga ggttgtcgcc tgccacgacg
     3061 atgacgtcgt cgtcaatccc cgcggcctcg agcacgaggt tgaggtcacc gatggcgccg
     3121 agcttgttcg agtcgtccgt tgacttgtcg ttgatgatgg tgaagt
//
LOCUS       DASPKR010000363         6333 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1602228, whole genome shotgun sequence.
ACCESSION   DASPKR010000363 DASPKR010000000
VERSION     DASPKR010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6333)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6333
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1602228"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..791
                     /locus_tag="VD968_09880"
     CDS             <1..791
                     /locus_tag="VD968_09880"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HYE14736.1"
                     /translation="APGAEAMPPVPPDMPERIMEAVVSAGVPLPLDEQGAAVTAGETV
                     ITKTYKLDDEAAFSLKSLRGDISIEGWESDEAQVKIIKRGGSPDERRAVPVLASSSEE
                     ALALTSPTADGEPVSVAYEVKLPRGTKQVQVSSGESRVKVSGLEGTVVVDVRGGELEF
                     RDVPGSVRGKLTKGRIKVFYGESGQTGAQEFSAVRGDVEVDFADAVSADVKAETMDGE
                     ISADAALGVNVEKRPAGQHAVGRLGDGDEQLLIKVVNGDIKLKK"
     gene            845..1993
                     /locus_tag="VD968_09885"
     CDS             845..1993
                     /locus_tag="VD968_09885"
                     /inference="COORDINATES: protein motif:HMM:NF024813.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HYE14737.1"
                     /translation="MAIEVIQFFDPTGSQIIHREPPQGSADIKMGAQLIVQENQSAVF
                     YRDGKALDTFGPGRHTLTTMNVPLLTRLLSIPFGGTSPFQAAVVFVARHTFQDMKWGT
                     KEPIAFRDSELYMVRLRAFGKYSIRVADPQLFVGSVVGTRNIVSTQGLGEYLRDIIVS
                     RLNDLLGENLKTVFDLPAYYDELAAGVKGRVAEDFSRQGLELVDMLISAITPPEEVQK
                     KIDERASMSALGDMDKYMRYKAAESMQDAARQPGGAAGQGMGLGMGFGFGQVMAGAIS
                     GQGQQQGGQGQQGGGGAAAGAQTVACQKCGTANSAGAKFCSNCGANVQQQQQQAGGVT
                     CPNCQAQAQPGAKFCPSCGTSLEPKKCKNCDTPMQPGAKFCPNCGTAA"
     gene            complement(2070..3350)
                     /locus_tag="VD968_09890"
     CDS             complement(2070..3350)
                     /locus_tag="VD968_09890"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HYE14738.1"
                     /translation="MLKRSLKGKLAAASLAVALALCFLPAAAARGPARDGAAESSDSR
                     EGRLRIFDEVWEQVRARYFDPALGGVDWPALRREMRPLAAEARGEREFYAVLRDMLGR
                     LRDPHTRVFAPGENGDWRVLRFVSVGVSVRELAGEVVVTQVERGSAAWRAGVRPGDAV
                     KSVEGVPAVSLGPAPARPFAAARVFDGPAGSPVNVVFASGGGRERSVRLVREERTRTP
                     ALEVRREGGVGVVSFNVFAAETAAALARALRAELAGSRALVVDLRDNGGGETEAMTDA
                     ASALLPSGLSLGRFNDRGGRVRLEPFTRSAALSSAAPLARFDGPVVVLTGARTASAAE
                     IFAAALKERGRARLVGEKTCGCVLAIRNRHELPDGGILDISELDYHTAAGSRLEGSGV
                     APDEPLAPTREDLRRGRDRAMKRAVEILKLMTKR"
     gene            complement(3331..3555)
                     /locus_tag="VD968_09895"
     CDS             complement(3331..3555)
                     /locus_tag="VD968_09895"
                     /inference="COORDINATES: protein motif:HMM:NF025733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich CWC family protein"
                     /protein_id="HYE14739.1"
                     /translation="MSAKESVCTAACARCGGGFECGAAAEGCWCAGVSLSESARATLS
                     GRFSGCLCRACLEQFAEGQVVFDGDAETES"
     gene            complement(3555..4466)
                     /locus_tag="VD968_09900"
     CDS             complement(3555..4466)
                     /locus_tag="VD968_09900"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HYE14740.1"
                     /translation="MTYGSALVILALALSRPTAAPTVFQPATVRLAVLDMGEAGTGVR
                     APSQLSKALAGAQIGGIRVALTDRDMSRAAARGVGYRGSLNMTLSEARDLGAAVGCDF
                     FVTGDAQTLRRSSSARPVYFESYASVFVASSRTGRLIRWERPAAEAATPGEAERLLLA
                     QLDAAAARLLSAVAEARAREDRERLAPPQQGDAHAPIIDLSAEEPEVAHGNVRPPAPY
                     RRIRPAYTEEAARAEAEATVDASVEIGADGRVTTVEIVRWAGFGLDDSVASAVSRTRF
                     RPAERGGEPVPVRVLLRYNFRRPQKKE"
     gene            complement(4467..4952)
                     /locus_tag="VD968_09905"
     CDS             complement(4467..4952)
                     /locus_tag="VD968_09905"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE14741.1"
                     /translation="MPDMLVNLLRLPDAGPTPEELRAEGLVVRRARAWELTQVRGFVE
                     RNFQAAWADEVSVGFARQPVSVFVALREGRLVGFAAYECSARNFFGPAGVVEVERGRG
                     LGRALLLMSLRALREMGYAYAVIGGVGPAEFYERAAGAAIIPESSPGIYADPLRPGDE
                     D"
     gene            complement(4973..5542)
                     /locus_tag="VD968_09910"
     CDS             complement(4973..5542)
                     /locus_tag="VD968_09910"
                     /inference="COORDINATES: protein motif:HMM:NF022215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2585 family protein"
                     /protein_id="HYE14742.1"
                     /translation="MKLARPFWLWAAGLVGVMAAAAALLRWQGRLWACACGYVLAWSG
                     DAWGSDNSQHLSDPYTLTHVLHGFALCGLLAWAAPRLAVRWRLLAAVAAEAAWEVIEN
                     SDFVIRRYREATLALGYTGDTVINSLGDIIACGLGFLLALRLGLWRTLAAFAATEILL
                     LVWIRDGLLLNVLMLLFPLESVKQWQMGQ"
     gene            complement(5539..>6333)
                     /locus_tag="VD968_09915"
     CDS             complement(5539..>6333)
                     /locus_tag="VD968_09915"
                     /inference="COORDINATES: protein motif:HMM:NF039904.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14743.1"
                     /translation="YLLRDSLMTGAKYGYYDLEWVVNAIEVDEQAGRIYVSARGLYAV
                     EEYLQARYYMFRQVYFHRTLRSAEAVLRSTLRRALEVMRDGGDAWCAPGTAFEKVLRR
                     APLSLTDHMEMDDSDVLFHAKQWQRSADALLSDLSRRFVGRRLFKAIDLDMPEHERPD
                     FLREARARVAAAGFDPDYYFIEDQASDVPYYSYYTAEGAEPKSLIYVEDGYARPVVRE
                     ISEVSEAVRGLRGYRLHRVCFPPEVKDEIYGLYHGAPARGAGGAGA"
BASE COUNT         1044 a         2211 c         2236 g          842 t
ORIGIN      
        1 cagcccccgg cgccgaggcg atgccgcccg tcccgcccga catgcccgag cggataatgg
       61 aggcggtcgt gagcgccggc gtcccgctcc ccttagacga gcagggcgcg gccgtcacgg
      121 cgggcgagac ggtgataacg aagacctaca agctcgacga cgaggccgcc ttctcgctca
      181 agagcctgcg cggcgacatc tcgattgagg gctgggagtc ggacgaggcg caggtcaaga
      241 tcatcaagcg cggcggcagc cccgacgagc ggcgcgcagt gcccgtgctc gcctcctcta
      301 gcgaagaggc gctcgcgctg acgagcccga cggccgacgg cgagcccgtc agcgtcgcct
      361 acgaggtgaa gctgccgcgc ggcacgaagc aggtgcaggt ctcgtccggg gagtcgagag
      421 ttaaggtctc ggggctcgaa ggcacggtcg tcgttgacgt gcgcggcggc gagctggagt
      481 tccgcgacgt gccgggcagc gtgcgcggca agctgacgaa ggggcgcatc aaggtcttct
      541 acggcgagtc ggggcagacg ggcgcgcagg agttctcggc cgtgcgcggc gacgtggagg
      601 ttgacttcgc agacgccgtg agcgcggacg tgaaggccga gacgatggac ggcgagataa
      661 gcgccgacgc cgcgctcggc gtcaacgtcg agaagcgccc tgccggccaa cacgccgtcg
      721 gccgcctcgg cgacggcgac gagcaactgc tgataaaggt cgtcaacggc gacatcaaac
      781 ttaagaagta agctccgggc gtgaggcgcg cgccggcacc acctttaaga ggagaagcag
      841 gcagatggca atcgaagtca tacagttctt cgacccgacg gggtcgcaga taatccaccg
      901 cgagccgccg cagggctcgg ccgacataaa gatgggcgcg cagctcatcg tgcaggagaa
      961 ccagtcggcc gtcttctacc gcgacggcaa ggcgctcgac acgttcggcc ccggccgcca
     1021 caccctaacg acgatgaacg tgccgctcct gacgcgcctg ctctccatac ccttcggcgg
     1081 cacctcgccc ttccaggcgg cggtcgtctt cgtcgcgcgc cacaccttcc aggacatgaa
     1141 gtgggggacg aaggagccga tcgcgttccg cgactccgag ctctacatgg ttcgcctgcg
     1201 cgccttcggc aagtactcca tccgcgtcgc agacccgcaa ctcttcgtcg gctccgtcgt
     1261 cggcacgcgc aacatcgtct ccacgcaggg cctcggcgag tacctgcgcg acataatcgt
     1321 ctcgcgctta aacgacctgc tcggcgagaa tttgaagacc gtcttcgacc tcccggccta
     1381 ctacgacgag cttgcggcgg gcgtcaaggg gcgcgtcgcc gaggacttta gccgtcaggg
     1441 cctagagctc gttgacatgc tcatctcggc gataacgccg cccgaggagg tgcagaagaa
     1501 gattgacgag cgcgcctcta tgtcggcgct gggcgacatg gacaagtaca tgcgctacaa
     1561 ggcggccgag tccatgcagg acgccgcgcg gcagccgggc ggcgccgccg ggcagggcat
     1621 ggggctcggc atgggcttcg gcttcggaca ggtgatggcg ggcgctataa gcgggcaggg
     1681 gcagcagcag ggcggtcagg gccagcaggg cggcgggggc gccgccgcgg gcgcgcagac
     1741 cgtcgcctgc cagaagtgcg ggaccgcgaa cagcgcgggc gcgaagttct gctccaactg
     1801 cggcgcgaac gtgcagcagc agcaacagca ggcgggcggc gtcacctgcc cgaactgcca
     1861 ggcacaggcg caaccgggcg cgaagttctg cccctcttgc ggtacctcat tagagcccaa
     1921 gaagtgtaag aactgtgaca cgcccatgca gcccggcgcg aagttctgcc ccaactgcgg
     1981 cacggccgcc tagtaaacac acgcgaatgt cagagccccg gcaggggcga cggaataacg
     2041 ttgtcattat tccgtcgccc cgccggggct catcgctttg tcatcagctt gagtatttca
     2101 acggcgcgct tcatggcgcg gtcgcggccg cggcggaggt cttcgcgcgt gggggcgagc
     2161 ggttcgtcgg gcgcgacgcc cgagccttcg aggcgcgagc cggcggccgt gtggtaatcg
     2221 agctcgctta tgtcgagtat gccgccgtcg ggcagctcgt gccggttgcg tatggcgagc
     2281 acgcagccgc aggtcttctc gccgacgagg cgcgcgcggc ccctctcctt cagtgcggcg
     2341 gcgaagattt cggcggcgct cgccgtcctc gcgcccgtga gcacgaccac ggggccgtcg
     2401 aagcgcgcga gcggcgcggc cgaggagagc gcggccgagc gcgtgaaagg ctcaaggcgc
     2461 acgcggcctc cgcggtcgtt gaagcggccg aggctcaggc ccgagggcaa aagggcggag
     2521 gccgcgtccg tcatcgcctc ggtctcgccg cccccgttgt cgcgcaggtc aacgacgaga
     2581 gcgcgcgagc cggcaagctc cgccctgagc gcgcgcgcga gcgcggctgc ggtctcggcc
     2641 gcgaacacgt taaagctgac gaccccgacg ccgccctcgc gcctgacttc gagcgcgggc
     2701 gtgcgcgtgc gctcctcgcg cacgaggcgc acgctccttt cgcgcccgcc gcccgaggcg
     2761 aagacgacgt taacgggcga gcccgcgggg ccgtcgaaga cgcgcgcggc ggcgaacggg
     2821 cgtgccgggg ccggcccgag cgagactgcc ggcacgccct cgacgctttt aaccgcgtcg
     2881 ccggggcgca cgcccgcgcg ccacgccgcc gagccgcgct cgacctgagt gacgacgacc
     2941 tcgcccgcca gctcccgcac gctcacgccg acggagacga agcggagcac gcgccagtcg
     3001 ccgttctcgc ccggcgcgaa gacgcgcgtg tgcgggtcgc gcaggcggcc gagcatgtcg
     3061 cgcaagaccg cgtagaactc gcgctcgccg cgcgcctccg cggcgagcgg gcgcatctcg
     3121 cgcctgagcg caggccagtc aacgccgccg agggcggggt cgaagtagcg cgcgcgaacc
     3181 tgctcccaga cctcgtcgaa gatgcgcaac cgcccctcgc gcgagtcgga cgactccgcc
     3241 gccccgtcgc gcgcgggccc gcgcgccgcg gccgcgggca gaaagcagag cgctagcgcg
     3301 accgcgagcg aggcagcagc gagcttacct ttaagactcc gtttcagcat caccgtcaaa
     3361 aacaacctgc ccttcggcga actgttcgag gcacgcgcgg cacaggcacc cgctgaagcg
     3421 cccgctcaag gtcgcgcgcg ccgactcgct caaactcaca ccggcgcacc agcagccctc
     3481 ggccgccgcg ccgcactcga acccgccgcc gcacctcgcg cacgcggccg tgcagactga
     3541 ctctttcgcg ctcatcactc cttcttctgg gggcggcgga aattgtagcg cagcaggacg
     3601 cggacgggaa cgggctcgcc gccgcgctcg gccgggcgga agcgcgtgcg gctcacggcg
     3661 gacgccacgg agtcgtccag gccgaagccc gcccagcgga ctatctcgac ggtggtgact
     3721 cggccgtcgg cgcctatctc gacggaagcg tcaacggtcg cctcggcctc ggcgcgcgcg
     3781 gcctcttcgg tataggcggg ccgtatgcgc ctgtagggcg cgggcgggcg cacgttgccg
     3841 tgggcgacct cgggctcttc ggccgagagg tctatgatgg gcgcgtgggc atcgccctgc
     3901 tgcgggggcg cgaggcgctc gcggtcttcg cgcgcgcgcg cctcggcgac ggccgagagc
     3961 aggcgcgcgg ccgcggcgtc gagttgcgcg agcagcagcc gctctgcctc tccgggcgtc
     4021 gcggcctcgg ccgcggggcg ctcccagcgg atgagacggc ccgtgcggga gctggcgacg
     4081 aagacggagg cgtaggactc gaaatagact ggccgggcgg aggaggagcg gcgaagggtc
     4141 tgcgcgtccc ccgtcacgaa gaagtcgcag ccgaccgcgg cgcccaggtc gcgcgcctca
     4201 ctcaacgtca tgttgagcga gccgcggtag ccaaccccgc gcgccgccgc gcgcgacatg
     4261 tcgcgatccg ttagcgccac cctgatcccg ccgatttgcg cgcccgcgag cgccttcgac
     4321 aactgcgacg gcgctcgcac gcccgtcccg gcctctccca tgtcgagcac ggccaggcgg
     4381 acggtcgcgg gttgaaagac agtcggcgcg gccgtcgggc gcgagagcgc tagagcgagg
     4441 atgacgagag cgctgccgta agtcattcag tcctcgtcgc cggggcggag cgggtctgcg
     4501 tagatgccgg gggagctttc ggggatgatg gcggcgccgg cggcacgctc gtagaactcg
     4561 gcggggccta cgccgccgat gacggcgtag gcgtagccca tctcgcgtag cgcgcgtagc
     4621 gacatgagca ggagcgcgcg ccctagaccg cgaccgcgct cgacctcgac tacgcccgcc
     4681 ggcccgaaga agttgcgggc cgagcactcg tatgcggcga agcccacgag cctgccctcg
     4741 cgcagcgcga cgaagacact cacaggctgg cgcgcgaagc cgaccgaaac ctcgtccgcc
     4801 cacgccgcct ggaagttgcg ctcgacgaag ccgcgcacct gcgtcaactc ccacgcccgc
     4861 gcgcgccgca cgactagccc ctccgccctc agttcttcgg gggtcggccc cgcgtcgggc
     4921 agcctcagaa ggttgaccag catgtccggc atgatctctt aacgctgcgg cgtcactgcc
     4981 ccatctgcca ctgcttgacc gactccagcg ggaagaggag catcaggacg ttcaggagca
     5041 gcccgtccct tatccagacg agcagtagta tctccgttgc ggcgaaggcg gcgagcgtgc
     5101 gccagaggcc cagccgcaga gcgagcagga agccgaggcc gcacgcaata atgtcgccca
     5161 gagagttgat gacggtgtcg cccgtgtagc cgagcgctag cgtcgcctcg cggtagcggc
     5221 gtatgacgaa gtcggagttc tctatcactt cccaggctgc ctccgcggcg acagcagcga
     5281 gcagccgcca cctgaccgcc agccgcggcg ccgcccacgc gagcagcccg cagagggcga
     5341 agccgtgcag cacgtgcgtg agcgtgtaag ggtcggagag gtgttgagag ttgtcagaac
     5401 cccacgcgtc gcccgaccat gcgagcacgt agccgcacgc gcacgcccaa agcctcccct
     5461 gccagcgcag cagcgcggcc gccgccgcca tcacgcccac aaggcccgcg gcccagagcc
     5521 agaacgggcg cgcaagcttc aagcgcccgc gccccccgcg ccgcgcgcgg gcgcgccgtg
     5581 gtagaggccg taaatctcgt cctttacttc gggcgggaag cagacgcggt gcaggcggta
     5641 gccgcgaagg cccctcacgg cctcgctcac ctcgcttatc tcgcgcacga cggggcgcgc
     5701 gtagccgtcc tctacgtaga tgagcgactt gggctccgcc ccctcggccg tgtagtaaga
     5761 gtagtacggg acgtcggaag cctggtcttc gatgaagtag tagtcggggt cgaagcccgc
     5821 cgccgcgacg cgcgcgcgcg cctcgcgcag gaagtcgggg cgctcgtgct cgggcatgtc
     5881 gaggtctatg gccttgaaga gcctgcggcc gacgaagcgg cggctcaagt cggacaggag
     5941 cgcgtccgca gacctctgcc actgcttggc gtggaagaga acgtccgagt cgtccatctc
     6001 catgtgatcg gtgagcgaga gcggcgcgcg gcgcaagacc ttctcgaagg ccgtgccggg
     6061 cgcgcaccaa gcgtcgccgc cgtcgcgcat gacttctagc gcgcgcctga gcgtcgagcg
     6121 cagcacggcc tcggccgacc tgagcgtgcg gtggaaatag acctgccgga acatgtagta
     6181 gcgcgcctgc aagtactcct cgacggcgta gaggccgcgc gccgagacgt atatgcgccc
     6241 ggcctgctcg tcaacctcta tggcgttgac gacccattcg aggtcgtagt agccgtactt
     6301 ggcgcccgtc atcagcgagt cgcgcagaag gta
//
LOCUS       DASPKR010000364         6051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_181338, whole genome shotgun sequence.
ACCESSION   DASPKR010000364 DASPKR010000000
VERSION     DASPKR010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6051)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6051
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181338"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2181
                     /locus_tag="VD968_09920"
     CDS             <1..2181
                     /locus_tag="VD968_09920"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HYE14744.1"
                     /translation="YYADLALQASCRMCLVRIEKMPKLQTSCTVTVTDGMNVTTASEE
                     IEKAQRGMVEFLLANHPLDCPVCDRGGECELQEMVFDWGQLEERFTERKNYHPEKFLS
                     PIVANDPQRCILCKRCTRVCDEWMGEDAIEAGGRGVHTVIGTYGGWLNCSQCGNCIEV
                     CPTGTLLDATYRHQTRPWELSRTTSTCTFCSDGCQLSVGSRAGEVMRVVARDRYVNGH
                     NGEFLCIKGRFAHPFVNHEERLRTPLVRYKKGGRLIPATWDEAVRFAAERLRAVKEAH
                     GAGAIGVVGSPRLTNESNWAMLKFARDVLGTDRYTATDAFSLTAFFENLGAPVATHRD
                     IRRASTIVLIGGEPEELQPLTGRQIRQAVRNGGAKLVIFNSTPIRLKQQAALFLHINP
                     GTEDAAVLALASPGDAEAAAGKLGVEAEALGRASQLISETAGDVVIMFGGELSAEAQA
                     VLARLSTAFGEKEGRRFLLHPLPLFNNSVGVHDIGLMKGALNPLEMLDAAGEGLRAMY
                     VAGSFLPSHLEGREDALSRLDFLAVQELFHTETTRHADVVFPAASFAETDGTFTNNGG
                     LVQRVRQSISPVHQSKPDWAITSQLAQALGIDLGFQMSASTIFMEIARHVPAYEGLRY
                     PLLKDESKPVQARHAVAAGGDAAARTAELRRAVETLEAAGPKTGATPPVGHELFRLGT
                     LTSKVPQFHLLAAGNPEPESVLISPLYQITIDDSLRRAPAAAGD"
     gene            2266..3375
                     /gene="nuoH"
                     /locus_tag="VD968_09925"
     CDS             2266..3375
                     /gene="nuoH"
                     /locus_tag="VD968_09925"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF004741.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HYE14745.1"
                     /translation="MEWLTNLVGPDVARGAAQLVGINVAFVVVLMIVAYTVLAERRIL
                     GFIQGRLGPNRVGPGGMLQPFADLLKFIFKEEITPTKATKFVYFLAPIIAITAALMPI
                     IVYPFGPSLRLPFLGEFSLVIARFDIALLYVLGITSVGVYGIALAGWASNSKYSLMGG
                     LRASAQMISYELSLGLSLVGVVLMSGTLDLYSIVEQQSGTYGLAWNIWRIDGMPQLIG
                     FVTYLISAIAETNRVPFDLPEAETELVAGFHTEYSALKFALFFMAEYVNMFTVSMLAT
                     TMFLGGWNFPFADYLLALFLERGSYWYSTLFALLSIFAFLAKVTFFLFLYIWLRGTLP
                     RFRFDQLMNFGWKFLLPVAILNVILTATVMFFVLR"
     gene            3510..4199
                     /locus_tag="VD968_09930"
     CDS             3510..4199
                     /locus_tag="VD968_09930"
                     /inference="COORDINATES: protein motif:HMM:NF012709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HYE14746.1"
                     /translation="MILFILFGALAVGCAIAVVAQRNPLYSAISLIGVFVALACLYVM
                     LAAPFIAAIQVIVYAGAIMVLVVFVIMLLNVEEEVRRPLRLRYLIPIGVVLAAVLAAE
                     GAFILTLGRTAGMTAVGPPSGEVGATASIGTGLFTEYLLPFEVTSILILMALVGAITL
                     ARRTATRLTPAAGDAPVLAAVEAPAGGALQPGRTDATGRAFARAQIERGEAAAPSDAS
                     GENKAAGGGEE"
     gene            4199..4501
                     /gene="nuoK"
                     /locus_tag="VD968_09935"
     CDS             4199..4501
                     /gene="nuoK"
                     /locus_tag="VD968_09935"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HYE14747.1"
                     /translation="MVPLSFYLALSAVLFTIGVVGVIIKRNAIAMFMCIELMLNAVNL
                     TFVAFSSYFGDVTGQLFVFIVMTVAAAEAAVGLGIIIAIFRNRESLDVDDASVLRL"
     gene            4513..>6051
                     /gene="nuoL"
                     /locus_tag="VD968_09940"
     CDS             4513..>6051
                     /gene="nuoL"
                     /locus_tag="VD968_09940"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HYE14748.1"
                     /translation="MENHLLAVVVFAPLAGAAVNWLVGRRVRSEAFIGAVACAAVGVS
                     TVCAFLIAFTAGGGAALTSEPARPVFSHLWTWLQVGSFRADFGFAMDRLSGIYACFVT
                     FVGLLIHVFATGYMHGDKGFYRFFAYLNLFMFMMLTLVLADNLLLMFVGWEGVGLCSY
                     LLIGYYIDRKEAGDAAKKAFVANRIGDWGVILGIMLVFFLTGSISFFDKPEAVTGGSA
                     VASALGRVAGMATDPFTLGAVFAGGVTSAAVLLFIGATGKSAQIPLFVWLPDAMAGPT
                     PVSALIHAATMVTAGVYMVVRCSAIYSHAPMALFIIAIVGAATAIFAATIGLAQNDIK
                     KVLAYSTVSQLGYMFLACGVGAFVAAIFHVMTHAFFKALLFLGSGSVIHGMHHEQDMR
                     RMGGLRKYMPVTFAAMLTGWLAICGVPIFAGFFSKDEILWKTFSTKAFGDSVAGPVLW
                     GVGAVTALLTAVYMTRLMVMTFWGGERFREAHAGGQADEAHAHAHDEGAKPHDARLAS
                     EGDRP"
BASE COUNT          944 a         2042 c         1954 g         1111 t
ORIGIN      
        1 tactacgcag acctcgccct acaggcttcg tgccggatgt gcctggtgcg catcgagaag
       61 atgccgaagc tgcaaacctc ctgcacggtg acggtcacgg acggcatgaa cgtcacgacc
      121 gcgagcgagg agatagagaa ggcgcagcgc gggatggtcg aattcctact ggcgaaccac
      181 ccgctcgact gccccgtctg cgaccgcggc ggcgagtgcg agcttcagga gatggtcttc
      241 gactggggcc agctcgaaga gcgcttcacg gagcgcaaga actaccaccc cgagaaattc
      301 ctctcgccca tcgtcgccaa cgacccgcag cgctgcatcc tctgcaagcg ctgcacgcgc
      361 gtctgcgacg agtggatggg cgaggacgcg atagaggccg gcggccgcgg cgtccacacc
      421 gtcataggca cctacggcgg ctggctcaac tgctcgcagt gcggcaactg catagaggtc
      481 tgcccgacgg gcacgctcct cgacgctacc taccgccacc agacgcggcc gtgggaactt
      541 tcccgcacga cctcgacctg cacgttctgc tccgacgggt gccagctctc cgtcggctcg
      601 cgcgctggcg aggtgatgag ggtcgtggcg cgcgaccgct acgtgaacgg ccacaacggc
      661 gagttcctct gcatcaaggg gcgcttcgcg cacccgttcg tcaaccacga ggagcgcctg
      721 cgcacgccgc tcgtgcgcta caagaagggc ggccggctga ttccggccac atgggacgag
      781 gccgtgcgct tcgcggccga aaggctgcgc gccgtcaagg aggcccacgg cgccggcgcg
      841 atcggcgtgg tcgggagccc gcgcctcacg aacgagtcga actgggcgat gctcaagttc
      901 gcgcgcgacg ttctaggcac cgaccgctac acggcgaccg acgccttctc gctcacggcc
      961 ttcttcgaga acctcggcgc gcccgtcgcg acgcaccggg acatacgccg cgcctcgacc
     1021 atcgtgctca tcggcggcga gcccgaggag cttcagccgc tcacgggccg gcagattcgt
     1081 caggccgtca ggaacggcgg cgctaagctc gtcatattca acagcacgcc catccggctg
     1141 aagcagcaag ccgcgctctt cctacacatt aaccccggca ccgaggatgc cgcggtgctc
     1201 gcgctcgcgt cgccgggaga cgccgaagcc gcggctggca agctcggcgt cgaggcggag
     1261 gcgctcggcc gcgcgagcca gttgataagc gagacggcgg gcgacgttgt catcatgttc
     1321 ggcggcgagc tgagcgccga ggctcaggcc gtgctcgcgc ggctgtcaac cgcgttcggc
     1381 gagaaggagg gccggcggtt cctcctgcac ccgctgccgc tcttcaacaa cagcgtgggc
     1441 gttcacgaca tagggttgat gaagggcgca ctgaacccgc tcgaaatgtt agacgccgcg
     1501 ggcgagggcc ttcgcgcgat gtacgtggcc gggagcttcc tgccctcgca cctcgaaggg
     1561 cgcgaggacg cgctctcgcg gctcgacttc ctcgccgtgc aggagctttt ccacaccgag
     1621 acgacgcgcc acgccgacgt ggtcttcccc gccgcctcgt tcgccgagac ggacgggacg
     1681 ttcacgaaca acggcgggct agtgcagcgc gtgcgccagt ccatctcgcc cgtccaccag
     1741 tcgaagccgg actgggcgat tacctcgcag ctcgcgcagg ccctgggcat tgacctcggc
     1801 ttccagatgt cggcgagcac gattttcatg gagatagcca ggcacgtccc agcctacgag
     1861 ggcctgcgct acccgctcct gaaggacgaa tcgaagcccg ttcaggccag gcacgcagtc
     1921 gcggcgggcg gggacgcggc cgcccggacg gcggagcttc ggcgcgcagt cgagacgctc
     1981 gaagccgcgg ggcctaagac gggcgcgacg ccgcccgtcg ggcacgagct cttcaggctc
     2041 gggacgctga cgagcaaagt cccgcagttc catctgctcg cggccggcaa ccccgagccc
     2101 gagagcgttc tgatttcccc cctctaccag ataaccattg acgactccct gcgccgcgcc
     2161 cccgcggccg ccggggactg aaacgcggtg atcagttgcc agtagtcagt catcagcaaa
     2221 gaactaaact gactactgat aacttataac tggtggctaa cccttatgga gtggctcacg
     2281 aatctagtgg ggcctgacgt ggcccgaggg gcggcgcagc tcgtcggcat caacgtcgcg
     2341 ttcgtcgttg tgctgatgat cgtcgcctac acggtgcttg cggagcggcg catactcggc
     2401 ttcatacagg gccgtctggg gccgaaccgc gtcgggccgg gcggcatgtt gcagcccttc
     2461 gcagacctcc tgaagttcat cttcaaggag gagatcacgc ccacgaaggc gacgaagttc
     2521 gtctatttcc tcgcgcccat catagcgatc acggcggctc tgatgccgat aatcgtctat
     2581 ccgttcggcc cgagtttgcg cctgcccttc ctcggcgagt tctcgctcgt catcgcgcgc
     2641 ttcgacatag cgctactgta cgtgctgggc atcacgtccg tcggcgttta cggcatcgcg
     2701 ctcgcgggct gggcgtcgaa cagtaagtac agcctgatgg gcgggctgcg cgcgtcggcg
     2761 cagatgatct cctacgagct cagcctgggc ctctcgctcg tcggcgtcgt gctcatgtct
     2821 ggcactcttg acctatacag catcgtcgaa cagcagtccg gcacatacgg cctcgcctgg
     2881 aacatctggc gcatagacgg gatgccgcag ctcataggct tcgtcaccta cctcatctcg
     2941 gccatcgccg agacgaatcg cgtgccgttc gacctgccgg aggccgagac cgagctggtc
     3001 gcgggcttcc acacggagta ctcggccctc aagttcgccc tcttcttcat ggccgagtac
     3061 gtcaacatgt tcacggtctc gatgctggcg acgacgatgt tcctgggcgg ctggaacttc
     3121 cccttcgccg actacctgct cgccctcttt ctggagcgcg gctcttactg gtactcgacg
     3181 ctcttcgcgc tgctgagcat cttcgccttc ctcgcgaagg tgacgttctt cctgttcctc
     3241 tacatctggc tgcgcggcac gctgccgcgc ttccgcttcg accagttgat gaacttcggc
     3301 tggaagttcc tgctgcccgt cgccatcctg aacgtgatac tgacggcgac ggtgatgttc
     3361 ttcgtgttga ggtagctgcc agcggccggc aataagccgt cggctttgag tggcgacgtt
     3421 gggaatgggc ttcgataacc tgctcgggcc gtgattggga gaagccgaaa gctgaccgct
     3481 gaccgcttgt tgctcttcct atgtggacga tgatcctgtt catcctgttc ggcgcgctgg
     3541 cggtggggtg cgccatcgcg gtggtggcgc agcgcaaccc actctacagc gccatctcgc
     3601 tcatcggcgt cttcgtcgcg ctcgcgtgcc tctacgtgat gctggccgcg ccgttcatcg
     3661 ccgccattca ggtcatcgtc tatgccgggg cgataatggt tcttgtcgtc ttcgtcataa
     3721 tgctcctgaa cgtcgaggag gaagtgcgcc ggccgctcag gctcagatac ctgataccca
     3781 tcggcgtcgt cctcgcggcc gtgctcgcgg ccgagggcgc cttcatcctg acgctcgggc
     3841 gcacggcggg catgactgcc gtggggccgc cctcgggcga ggtcggggcg acggcctcaa
     3901 tcggcacggg gctcttcacg gagtacctgc tgccgttcga ggtgacttcc attctgatat
     3961 tgatggccct cgtcggggcg atcacgctcg cgcggcgcac ggcgacgcgg ctcacgcccg
     4021 cggcgggcga cgcgcccgtg ctcgcggcgg tcgaagcccc ggccggcggg gcgctacagc
     4081 ccggcaggac tgacgcgacg ggccgggcct tcgcccgggc gcagatagag cgcggcgagg
     4141 ccgcggcccc gtccgacgca tcgggcgaga acaaagcagc ggggggcgga gaagagtgat
     4201 ggtgcctttg tccttttacc ttgcgctctc ggccgtgctc ttcacgatag gcgtggtggg
     4261 cgtcatcatc aagcgcaacg ccatcgctat gttcatgtgc atagagctca tgctcaacgc
     4321 cgtgaacctg acgttcgtcg ccttctcaag ctacttcggc gacgtgacgg gccagctctt
     4381 cgtcttcatc gtgatgacgg tggcggccgc ggaggccgcg gtcggcctcg gcatcatcat
     4441 cgccatcttc cgtaaccgcg agtccctcga cgtggacgac gcgagcgtgc tgaggcttta
     4501 agagaagtag cgatggaaaa tcatcttctc gccgttgtcg tcttcgcgcc gctggccggg
     4561 gccgccgtca actggctggt gggccggcgc gtgcggagcg aggcgttcat aggcgcggtc
     4621 gcctgcgccg ccgtcggcgt ctcgacggtc tgcgccttcc tgatagcctt cacggccggg
     4681 gggggcgcgg ccttaacgag cgagccggcg cggcccgtct tcagccacct ctggacgtgg
     4741 ctacaggtcg gaagtttccg cgcggacttc ggcttcgcga tggacaggct ctccggcatc
     4801 tacgcctgct tcgtcacatt cgtcggcctg ctcatacacg tcttcgccac cggctacatg
     4861 cacggcgaca aggggttcta ccgcttcttc gcgtacctga acctcttcat gttcatgatg
     4921 ctgacgctcg tgctggccga caacctgctc ctgatgttcg tcggctggga gggcgtgggg
     4981 ctctgctcct acctgctgat cggttactac attgaccgca aggaggccgg cgacgcagcc
     5041 aagaaggctt tcgtcgcaaa ccgcataggc gactggggcg tcatactcgg catcatgctc
     5101 gtctttttcc tgacgggctc gatcagcttc ttcgacaagc cggaggctgt gacgggaggc
     5161 tcggcggtcg ccagcgcgct cgggcgcgtc gcggggatgg cgacagaccc gttcacgctg
     5221 ggcgcggtct tcgcgggcgg cgtgacttcc gcggccgtgc tcctcttcat cggcgcgacg
     5281 ggcaagagcg cgcagatacc gctcttcgtc tggctgccgg acgcgatggc cggcccgacg
     5341 cccgtctcgg cgctcataca cgccgcgacg atggtgacgg cgggcgtcta tatggtcgtg
     5401 cgctgctcgg ccatctactc gcacgcgccg atggcgctct tcatcatcgc aatcgtcggc
     5461 gccgcgaccg ccatcttcgc cgcgaccatc ggcctcgctc agaacgacat caagaaggtt
     5521 ctggcctact ccaccgtctc gcagctcggc tacatgttcc tcgcgtgcgg cgtcggcgcc
     5581 ttcgtcgccg ccatcttcca cgtgatgacg cacgccttct tcaaggcgct cctcttcctc
     5641 ggctccggct ccgtaattca cggcatgcac cacgagcagg acatgcgtag gatgggaggc
     5701 cttcggaagt acatgcccgt caccttcgcg gcgatgctga cgggttggct cgccatctgc
     5761 ggcgtcccca tcttcgccgg cttcttctcg aaggacgaga ttctctggaa gactttcagc
     5821 acgaaggcgt tcggcgactc cgtcgcgggc cctgtgctct ggggcgtggg cgccgtgacg
     5881 gcgctgctca cggccgtcta tatgacgcgc ctgatggtga tgaccttctg gggcggcgag
     5941 cgcttccgcg aggcgcacgc cggcgggcag gccgacgagg cgcacgccca cgctcacgac
     6001 gagggagcca agccccacga cgcccgcctg gcctcagaag gcgaccgccc g
//
LOCUS       DASPKR010000365         2877 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1731331, whole genome shotgun sequence.
ACCESSION   DASPKR010000365 DASPKR010000000
VERSION     DASPKR010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2877)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2877
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1731331"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1116)
                     /locus_tag="VD968_09945"
     CDS             complement(<1..1116)
                     /locus_tag="VD968_09945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14749.1"
                     /translation="MKLCPTCQEEFADKFGFCPVDGTPLSANAAASVVTARAAEPEAT
                     AATATSPNGNASNGSSHTADEEETVFSQPGVERGEYHLTFLEDAGLTRRLIEEVRSVA
                     HEAELTWPEFKRDPAGFVSRSATAYGRAGWKFFSQRNVSVAVLAAFVLVLGGLAVILA
                     LERLNLARSAAARAAINEQLELVGMLEDEIPKEQEEPEEGAAGTAKGSGGGQKPKQER
                     PQGGGGGGRQEQLPASFGKLPQASLAPPILPPNPHPPAVKSPSLPVLPTIQADPTLFP
                     PDARPLPYGDPKSSSATPSAGPGVGDGIGTGSGPGVGPGSGAGVGPGEGWNTGGGSGR
                     LGGGGAGGGGGGAPIDYSRPFSQKDVTRKANIISKPEP"
     gene            1497..>2877
                     /locus_tag="VD968_09950"
     CDS             1497..>2877
                     /locus_tag="VD968_09950"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE14750.1"
                     /translation="MKSQIKLPRALLLSALLILSALPASARQGAPEPKREQLLNGLKI
                     LFAPRPAGSEVLLKLRVHSGAAFDLAGKEGLMALLGDLMFDAQTRAYVTEELDGRLEV
                     RVGYDSIDVTLAGRASDFERLMELMRNAFLNLQLTPEAVERARAERLRAVATSARTPA
                     EVADAAAAARLFGAYPYGRSTEGTPESLARAQRPDLMLMRERFLNPNNATLVIAGDLD
                     QRRVMRLLRQSLGPWRKGDRTIPATFRQPEAPDARALVINRPGASGVEVRLAARGLAR
                     ADRDYPYAQALAQVALSRWLAAVPELSSGAASARHRAFREGGLFLMSATVPTPELAAR
                     ALAKGREVLSALASSQPPTAAEMSAGTAAAPAAQAQGVEALIESWLDEQTYGLAADSS
                     APVVLSAGEAQRVAARLFLHTPLAAVAVGDAERLRAELARAGGVEVFGEPAAQPAAAT
                     TQPPQASPSP"
BASE COUNT          404 a         1078 c          965 g          430 t
ORIGIN      
        1 cggctccggc ttcgagatta tgttcgcctt gcgcgtcacg tccttctggc tgaacgggcg
       61 gctgtagtct atcggcgcgc cgccgcctcc gccgcccgcg ccgccccccc cgagcctgcc
      121 cgagcccccg cccgtgttcc acccctcgcc cggccccacc ccggcgcccg agcccggccc
      181 cacgcccggc cccgagccgg tgcctatgcc gtcgcccacg ccggggccgg ccgagggcgt
      241 cgccgagcta gacttcgggt ccccgtaggg cagcggcctg gcgtcggggg ggaagagcgt
      301 cgggtcggcc tgtatggtcg ggagcaccgg cagcgacggg ctcttcaccg ccggcgggtg
      361 cgggttgggg ggcagtatgg ggggggccag cgacgcctgc ggcagcttgc cgaaggaggc
      421 cggcagctgc tcctggcggc cgccgccgcc gccgccctgc ggccgctcct gcttcggctt
      481 ctgcccgccg cctgagccct tggccgtgcc ggccgcgccc tcctccggct cctcctgctc
      541 cttaggtatc tcgtcctcga gcatgccgac cagctctagt tgctcgttga tagcggcgcg
      601 cgcggcggcc gagcgcgcaa ggttcaggcg ctcgagcgcg agtatgacgg ccaggccgcc
      661 gagcacgagc acgaaggccg cgagcactgc gaccgagacg ttgcgctgcg agaagaactt
      721 ccagccggcc cgcccgtagg ccgtggcgga gcgcgagacg aagcccgcgg ggtcacgctt
      781 aaattcgggc catgtaagct cggcctcgtg cgccaccgag cggacttcct cgatgaggcg
      841 gcgcgtcagc cccgcgtctt cgaggaacgt aagatgatac tcgccccgct cgacgcccgg
      901 ctgcgagaat actgtctcct cttcgtcggc ggtgtgcgaa gagccgttcg acgcgttgcc
      961 gttgggcgaa gtcgccgtgg cggcagtcgc ctcgggctcg gcggcgcggg ccgttacgac
     1021 cgacgcggcc gcgttggccg agagcggagt accgtcaacc ggacagaacc cgaacttgtc
     1081 ggcgaattcc tcttggcacg ttgggcacaa tttcatttct gactacctcg atccgaaccg
     1141 aactctcgca ggcaggctct aaaataccga agaaacccca aatccgggcc ggcgatccgg
     1201 ggggctggct gaattatatc aaacgtctcg aaggcttgcg taacttgcga ggccaaaaag
     1261 gcgcgggcct tcaacacgcc ttgacaggca ttttgatgcg ggccgcgccc gaacggtgcg
     1321 ccgctcgccc gcgacagttt gtaccatttc cgcccgccgc ccgcgagccg ccgaaggcag
     1381 ttgaccaact cccgcacggc atctaaactc agcccggaac accgctcccc ggctccttat
     1441 tacaaccgtc tttccaaagg actgaaccgg cgggcgagcg ccgccccgaa accgcgatga
     1501 agagccagat aaaactccct cgcgcgctgc tgttgagcgc cctgctgatt ctgtcggcgc
     1561 tgccggcctc ggcgcggcag ggcgcgccgg agccgaagcg cgagcagctc ttaaacggcc
     1621 tcaagattct gttcgcgccg cgcccggctg gctcggaagt cctcctgaag ctccgcgtcc
     1681 acagcggcgc cgctttcgac ctcgccggca aggagggctt gatggccctg ctcggcgacc
     1741 tcatgttcga cgcgcagacg cgcgcatacg tcacagagga gctggacggg cggctcgaag
     1801 tccgcgtcgg ctacgactcg attgacgtga cgctcgccgg ccgcgcatcc gacttcgagc
     1861 ggctgatgga gctcatgcgc aacgccttcc tcaacctgca actcacgccc gaggccgtcg
     1921 agcgcgcccg tgccgagcgc cttcgcgcgg tcgccacgtc ggcgcgcacg ccggccgaag
     1981 tcgcagacgc ggccgcggcc gcccggctct tcggcgctta cccttacggc cgctcgacgg
     2041 aaggcacgcc tgagtcgctc gctcgcgccc agcgcccaga ccttatgctc atgcgcgagc
     2101 ggttcctgaa ccccaacaac gccacgctcg taatcgcggg cgacttagac cagcgccgcg
     2161 tcatgcggct gctgcgccag tcgctcggcc cctggcgcaa gggcgaccgc acgatccccg
     2221 cgaccttcag gcagccggag gcgcccgacg cgcgcgccct cgtcatcaac cgacccggcg
     2281 cctcgggcgt tgaggtgcgt ctcgcggcgc ggggccttgc gcgcgccgac cgtgactacc
     2341 cttacgctca ggcgctcgca caggtcgcgc tctcgcgctg gctggcggcc gtgcctgagc
     2401 tttcttcagg cgcggcaagc gcacgccacc gagccttccg cgagggcggg ctgttcctga
     2461 tgagcgcgac ggtcccgacg cccgagcttg ccgcgcgcgc tctcgccaaa gggcgggagg
     2521 tcttgagcgc gctcgcgtcc tcgcagccgc cgacagcggc ggagatgtcg gcggggacgg
     2581 ccgccgcgcc cgctgcccag gcgcaagggg tcgaggcact catcgaaagt tggctcgacg
     2641 agcagaccta cggcctcgcg gctgactcgt ccgcgcccgt tgtcctctct gccggggaag
     2701 cccagcgcgt cgcggcccgc ctgtttctgc acacgcctct cgcggccgtt gccgtgggcg
     2761 acgcggagcg tctgcgcgcc gagcttgcgc gggcgggcgg agtcgaggtc ttcggcgagc
     2821 ccgcggccca gcccgccgcc gcgacgactc agcccccgca ggcgagcccg agcccgc
//
LOCUS       DASPKR010000366         3263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1086539, whole genome shotgun sequence.
ACCESSION   DASPKR010000366 DASPKR010000000
VERSION     DASPKR010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3263)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3263
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1086539"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..518
                     /gene="glnA"
                     /locus_tag="VD968_09955"
     CDS             <1..518
                     /gene="glnA"
                     /locus_tag="VD968_09955"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF012348.4"
                     /note="forms a homododecamer; forms glutamine from ammonia
                     and glutamate with the conversion of ATP to ADP and
                     phosphate; also functions in the assimilation of ammonia;
                     highly regulated protein controlled by the
                     addition/removal of adenylyl groups by adenylyltransferase
                     from specific tyrosine residues; addition of adenylyl
                     groups results in inactivation of the enzyme; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HYE14751.1"
                     /translation="GLLKHAAAIVAFAAPTTNSYKRLVPGFEAPVNLAYSARNRSAAI
                     RIPMFSQSPKLKRLEFRPPDPSCNPYLAFSAMLMAGLDGIQNRIDPGEPLDKDIYDLA
                     PEELKNVPSLPGSLDESLKALESDHDFLLKGEVFTPQLIDRWITYKREKEINPMRMRP
                     HPLEFSLYFDI"
     gene            834..>3263
                     /locus_tag="VD968_09960"
     CDS             834..>3263
                     /locus_tag="VD968_09960"
                     /inference="COORDINATES: protein motif:HMM:NF015655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14752.1"
                     /translation="MPSHAEIETLARELPDPEGARLFYERLTAARPRAARLLEGDAGL
                     LADALALAAWSPLLATTIEQNPEYLNWLARERALTRVRETEETGEALARFALTHSQLD
                     SHLMLSRFRRRELLRVYLHDIRREATLVETTEELSNLADAVLRHALGHARQELENLYG
                     TPQCRDERGRRMAAGLCVVGLGKLGSRELNYSSDIDLLFIYSDDGETSGKGERGAVTN
                     REFFCKLAERVSMAVGGQAGEGAAYRVDLRLRPHGRDGALAVSLEEALRYYRAKAHAW
                     ELQALIRSRASAGSAQLFARFAEGVRERVYRTEETVARALDHVRLAKQKIDRFHASEP
                     RGYNVKLGRGGIREIEFIAQALQLAYGGRDPWLQAPHTLISLGRLAERGLITERERGE
                     LSDAYAFLRTVEHRVQMEHGLQTHTVPDEPSRRALLARRMHFAGERALEEFDGALAYH
                     TGNVGRAYRRVFGAAEDGSAAVSASVSDRETAAPSSSEPATAARHAGAPAELSSRARA
                     AADVHKGAEVKLSLAAAPVFARHLSGEEAPGEEALAAALREEAARSLNPRRSLSLLAR
                     VAASLDKSAERVELSAESLAGLARFCGTSEPFGEMIAANPSLISSVAPDAETVKGRDH
                     RALLRAAVCAGRNFREELSALRRAWAHLLVEIAARDAAGELAPADSNALQTSLAAASI
                     NAALLVARRELARRFGRLATGPRLAALGLGRLGSGGVDYGSDLDLVLVYDPLVPPPLA
                     GLTHEESYARMAELLTVALSSLTRDGYLYRVDLRLRPDGKNGAPASSSQAFVSYLSER
                     AEVWEWLAHVKL"
BASE COUNT          485 a         1216 c         1077 g          485 t
ORIGIN      
        1 gcggcctcct gaagcacgcg gcggcgatcg tcgccttcgc ggcgccgacg acgaacagct
       61 acaagcggct cgtccccggc ttcgaagcgc ccgtcaacct cgcctactcg gcgcgcaacc
      121 gctcggccgc catccgcata ccgatgttct cgcagagccc gaagctcaag cggcttgagt
      181 tccgcccgcc cgacccgtct tgcaacccgt acctcgcctt ctcggcgatg ctcatggcgg
      241 gcctcgacgg catacagaac cggattgacc ccggcgagcc gctcgataag gacatatacg
      301 acctcgcgcc cgaggagctg aagaacgtcc cctccttgcc gggctcgctc gacgagtcgc
      361 tcaaggctct ggagtccgac cacgacttct tgctcaaggg cgaggtcttc acgccgcagc
      421 tcatagaccg ctggataacc tacaagcgcg agaaggagat caacccgatg cggatgcgcc
      481 cgcacccgct cgagttctcc ctctacttcg acatctaacg gcgcacccgc ttcaagccgc
      541 ggccgggccg cgcgtgccgg gacgtttgaa cgtcttgtcg cccgcgcggc ccggccgcgg
      601 ctccgcattt gagtctctaa tccagcgagc cgggcgccct gcatctcgtc cgcgactggc
      661 tgaaacccat ccggcttcac gagcagcgac ggccgccctg tccagcaggc cgagacgaag
      721 tgattacgga ttgcggattg acgagagagg gttgacgaca gcagcgccgt cgtcaaccct
      781 cttatccttc cccttccgca acccgcattc actaatctgt taatattttg ggcgtgccgt
      841 cgcacgcgga aatcgaaacg ctggcgcgag agctgcccga cccggagggc gcgcgcctct
      901 tctacgagcg cctgaccgcg gcccggcctc gcgccgcgcg gctcctggag ggcgacgcgg
      961 gtctcctcgc cgacgcgctc gccctcgccg cctggagccc tctgctcgcc accaccatcg
     1021 agcagaaccc cgaatacctc aactggctcg cgcgcgagag ggcgctcacg cgagtgcgcg
     1081 agacggagga gacgggcgag gcgctggcgc gcttcgcgct cacgcactcg cagctcgatt
     1141 cgcacctcat gctctcgcgc ttccgccgaa gggagcttct gcgcgtctat ctccacgaca
     1201 tacgccgcga ggccacgctc gtcgagacta cggaggagct gtcgaacctc gccgacgccg
     1261 tgctgcgcca cgcgctcggc cacgcccgcc aggagctgga gaacctctac ggtacccctc
     1321 agtgccgcga cgagcgcgga cggaggatgg ccgcgggcct ctgcgtcgtg ggcctgggca
     1381 agctcggctc gcgcgagctg aactactctt cggacataga cctgctcttc atctactcgg
     1441 acgacggcga gacctcgggg aagggcgagc gcggcgccgt caccaaccgc gagttcttct
     1501 gcaagctcgc cgagcgcgtc tcgatggccg tcggcgggca ggccggcgag ggcgcggctt
     1561 accgcgttga cctgcggctg aggccgcacg gccgggacgg cgcgctggcc gtctcgctcg
     1621 aagaggcgct gcgctactac cgcgcgaagg ctcacgcgtg ggagcttcag gcgctcatac
     1681 gctcgcgcgc ctcggccggg tcggcgcagc tcttcgctcg cttcgccgag ggcgtgcgcg
     1741 agcgagtcta tcgcacggag gagactgtcg cgcgggcgct cgaccacgtc cgcctcgcca
     1801 agcagaagat agaccgcttc cacgcctccg agccgcgcgg ctacaacgtc aagctcggcc
     1861 gcggcggcat acgcgagata gagttcatcg cgcaggcttt gcagctcgcc tacggcgggc
     1921 gcgacccgtg gctccaggcg ccgcacacgc tcataagcct cgggcgattg gccgagcgcg
     1981 ggctaatcac ggagcgcgag cgcggggagc tctccgacgc ttacgccttc ctgcgcaccg
     2041 tcgagcaccg cgtgcagatg gagcacggcc tgcaaactca cacggtgccg gacgagccgt
     2101 cgcgccgcgc gctgctcgcg cgccgaatgc acttcgcggg cgagcgcgcg ctcgaagagt
     2161 tcgacggcgc gctcgcctac cacacaggga acgtgggacg cgcctaccgc cgcgtcttcg
     2221 gcgcggccga ggacggaagt gccgccgtca gcgcgtcagt gagcgaccgg gagacggcgg
     2281 cgccttcatc gtcggagccc gcgacggccg cgcggcacgc cggagcgccc gccgaactgt
     2341 catcccgcgc gcgcgccgcc gccgacgttc acaagggcgc cgaagtaaag ctctcgctcg
     2401 cggccgcgcc cgtcttcgcg cgacacctct cgggcgagga ggcgccgggc gaggaggcgc
     2461 tcgccgccgc gctgcgcgag gaggcagcgc gctcgctcaa cccgcgccgc tcactctcgc
     2521 tgctggcgcg cgtcgccgcc tcgctcgaca agtcggccga gcgcgtcgag ctgagcgccg
     2581 agtcgctcgc agggctcgcg cgcttctgcg gcacgtccga gcccttcggc gagatgattg
     2641 ccgccaaccc ttctctcatc tcttcggtcg cacccgacgc cgagaccgtg aagggccgcg
     2701 accaccgtgc gcttcttcgc gcggccgtgt gcgccggccg gaacttccgc gaggagcttt
     2761 cggcgctaag gcgcgcttgg gcgcacctgc tcgtcgagat agccgcgcgc gacgcggccg
     2821 gagagctcgc gcccgccgac tcgaacgccc ttcagacctc gctcgccgcc gccagcatca
     2881 acgccgcgct cctcgtcgcg cgccgtgagc tggcacgccg cttcggccgg ctcgcgaccg
     2941 ggccgcgcct ggccgcgctc ggcctgggcc gcctgggcag cggcggcgtt gactacggct
     3001 ctgacctaga cctggtgctc gtctatgacc cgctcgtgcc tccgccgctc gcggggctaa
     3061 cgcacgagga gtcttacgcg cgcatggcag agctgctcac cgtcgccctg tctagcctca
     3121 cgcgcgacgg ctacctgtac cgggttgacc tgcgactgcg gccagacgga aagaacggcg
     3181 cgccggcgtc gtcgtcgcag gcgttcgtct cttacctgtc ggagcgcgcg gaggtctggg
     3241 agtggctcgc gcacgtgaag ctg
//
LOCUS       DASPKR010000367         4271 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1731497, whole genome shotgun sequence.
ACCESSION   DASPKR010000367 DASPKR010000000
VERSION     DASPKR010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4271)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4271
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1731497"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1155)
                     /locus_tag="VD968_09965"
     CDS             complement(<1..1155)
                     /locus_tag="VD968_09965"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE14753.1"
                     /translation="MTTGVLRVLITNYALEERAGTELYVRDLATGLLRRGHAPVVYTT
                     RAGEAAAALRRETVPVVTDLRQLGSPPDIIHGQHHAETMTALLHFPSTPALFVCHGWL
                     AWEETPPRFPRVLRYVAVDETCRDRLVCEHGVPEPLVRVAHNFVDLERFRPRGPLPPK
                     PRRALVFSNHAGEATHLGAVREACARAGVELDVAGLKSGRPCAEPEKILGSYDLVFAK
                     ARCALEAMAVGAAVVLCDAAGAGPLVTSAELARLRGLNFGIRALREEPSPGALAREIA
                     RYDAADAAEVSRRVRAVAGRDRAVDEMVALYREVIDESRAVKTCDAGEEGRAAADYVR
                     WLTTELAREREGLKRERDLFTNSVTARLRERVLSIPLLGPIARAASNRLAH"
     gene            complement(1152..2006)
                     /locus_tag="VD968_09970"
     CDS             complement(1152..2006)
                     /locus_tag="VD968_09970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14754.1"
                     /translation="MQSSPNGLPQPPSALVVAHPGHEVRLHGWLERARPTVFILTDGS
                     GLAGEPRIGATARYLSSLGLRPGPVFGRFTDTEVYSALLGHDFRFFIELSEKLAGEFA
                     RAGVASIVADAAEGYNTTHDVCRLVADAAASMAGADAGRRLDNYDFPVVGRPDRCPEH
                     LRGQAVWMELDDETFGRKLSAAREFYPGLFADVKDAVHGRGESPMREFIERGGEGGGG
                     IEAFRVECLRPAGRGGAVGADGGARPFYETLGERQLAAGHVERVIRYREHIAPLASAL
                     GEHAERRA"
     gene            2185..3246
                     /locus_tag="VD968_09975"
     CDS             2185..3246
                     /locus_tag="VD968_09975"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HYE14755.1"
                     /translation="MNRKSLLSLAAAALLTTAAAHARQSPPSPPAPAAPPAPAAPEAP
                     AAFATTFLLDGDNFLGIHPEEVTRENMGRYQMTGEPRGVGVRSVVKGSPAERAGLREG
                     DVIVRFDGEAVTSLRKLNRLIDESAPEHTARITVLRGGSEQEVSAKLEARHAFMPAIE
                     GVGPNFDAEAARRLAEELGKNSEKFKLDSEELRKKLEELQRANPGGLYSFSFGNSRRI
                     GVATSGLGKQLAEYFGVSNGVLVNSVEAGSPAERAGIKAGDVITEADGTKVGDASDLS
                     SAINRRGEGEVTLTVVRERKQRTVRVTPEKREPQGFHINPGSFRIAPPVAALRAVRAV
                     PRARVAPRVRALRGWGRAI"
     gene            complement(3294..3812)
                     /locus_tag="VD968_09980"
     CDS             complement(3294..3812)
                     /locus_tag="VD968_09980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14756.1"
                     /translation="MPSLTAPEIYSNVFERLERDGVRYVVVSGVAVVLHGHARPVADL
                     DIVIDPAPEEAARALRSLAAAGFVPSIPLPLAVLSVLRMFDRAGREVDVFARYCVPFA
                     ELWAASERRRVGEAAARVVSLEHLLRAKRANGRPHDLLDIKGLLSLGAARGEAEEPAG
                     EPPDDEKSRGGG"
     gene            complement(3815..>4271)
                     /locus_tag="VD968_09985"
     CDS             complement(3815..>4271)
                     /locus_tag="VD968_09985"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HYE14757.1"
                     /translation="WRWREPRGCLRVDVRLGDGGAAPVLHVFNVHLGTAYMERRNQGR
                     RLVSEQILRDGRLAGPRVVLGDFNEWTHGLASRLLGEELRSADVRQHLRTRRTYPGPL
                     PLFHLDHVYYDPSLELERLSLHRSRTALVASDHLPLVADFRLVSRNGAD"
BASE COUNT          656 a         1489 c         1550 g          576 t
ORIGIN      
        1 gtgggcgagc ctgttcgacg cggcgcgggc gatggggccg aggaggggga tggagagcac
       61 gcgctcacgc agtcgcgccg tgacggagtt ggtgaaaagg tcgcgctccc tcttcagccc
      121 ttcgcgctcg cgcgcaagct cggtcgtgag ccagcggacg tagtcggcgg ccgcccgccc
      181 ctcctccccg gcgtcgcaag ttttaacggc gcggctctcg tcaataacct cgcggtagag
      241 cgcgaccatc tcgtccacgg cccggtcgcg accggcgacg gcgcgaaccc ggcgcgagac
      301 ctcggcggcg tcggcggcgt cgtagcgcgc tatctcgcgg gcgagcgcgc cggggctcgg
      361 ctcctcacgc agcgcgcgta tgccgaagtt caggccgcgc agccgcgcca actccgccga
      421 cgttacgagc ggcccggccc cggccgcgtc gcagagcacg acggcggcgc ccacggccat
      481 cgcttcaagc gcgcagcgcg ccttcgcgaa gacgagatca tagctcccca gaatcttctc
      541 cggctccgcg cagggccggc cggacttcag gcccgccacg tcgagctcaa cgcccgcgcg
      601 cgcgcacgcc tctcgcacgg cgccgaggtg cgtcgcctcg cccgcgtggt tgctgaagac
      661 gagcgcgcgg cgcggcttcg gaggcagggg gccgcggggg cggaagcgtt cgaggtcaac
      721 gaagttgtgg gcgacgcgca cgagcggctc cggcacgccg tgctcgcaca cgaggcggtc
      781 gcggcatgtc tcgtcaactg cgacgtagcg gagcacgcgg gggaagcgcg gcggcgtctc
      841 ctcccatgcg agccagccgt ggcagacgaa gagagcgggc gtcgagggga agtgcagcag
      901 cgccgtcatc gtctcggcgt ggtgctggcc gtggatgatg tcgggcggcg agccgagctg
      961 tctgaggtct gtgacgacgg ggacggtctc gcgccgcagc gcggccgccg cctcgcccgc
     1021 gcgcgtcgta tagacaacgg gcgcgtggcc gcgcctgaga agccccgtgg cgaggtcgcg
     1081 gacgtaaagc tccgtgccgg cccgctcttc gagcgcgtag ttggtgatta agaccctgag
     1141 cacgcccgta gtcatgcgcg cctctcggcg tgctcgccga gcgccgaggc gagcggcgcg
     1201 atgtgctcgc ggtagcgtat cacgcgctcg acgtggccgg ccgcgagctg cctctcgccg
     1261 agcgtctcgt agaagggccg cgcgccgccg tcggcgccga ccgccccgcc gcgccccgcg
     1321 ggccgcaggc actcgacgcg gaacgcctcg atgcctccgc ccccttcgcc cccgcgctcg
     1381 atgaactccc gcatcgggct ctcgccgcgg ccgtgcacgg cgtctttcac gtcggcgaag
     1441 aggccggggt agaactcgcg cgcggccgag agcttgcggc cgaaggtctc gtcgtcgagc
     1501 tccatccaga ccgcctgccc gcgcaggtgc tcggggcagc ggtcggggcg gccgacgacg
     1561 gggaagtcgt agttgtcgag ccgacggccc gcgtcggcgc cggccataga ggcggcggca
     1621 tctgcgacga ggcggcagac gtcgtgagta gtgttgtagc cttcggcggc gtcggcaacg
     1681 atgctcgcga cccccgcgcg ggcgaactcg ccagccagtt tttcactcag ttcgatgaag
     1741 aagcggaagt cgtgaccgag cagggcacta tagacctcag tgtctgtgaa gcgcccgaag
     1801 acggggccgg gccgcaggcc gaggctggag aggtatcgcg ccgtcgcgcc tatcctcggc
     1861 tcgcccgcga gccccgagcc gtccgtcagg atgaaaaccg tggggcgcgc acgctccagc
     1921 cagccgtgca ggcgaacctc gtggcctggg tgcgcgacga ccagggcgct cgggggctgc
     1981 ggcaggccgt tgggggagct ttgcatccga acctcgaacg gggctttcag tgattcgcga
     2041 gacggcctat tctgacagcc gcgccgcccg cagtaaagaa ggggcgaggc gctaaaaatc
     2101 aacgcctcac ttttcggaac cgggggccga cgcgggcgtg agaagcgtgc ggagggaaaa
     2161 tcctgtcagg aggtctcttt gtccatgaac cgcaaatcgc tgctctctct ggccgccgcc
     2221 gcgctcctga cgacggccgc ggcgcacgcg cgccagtccc cgccctcgcc tcccgctccg
     2281 gccgccccgc ctgctcccgc ggcgcccgaa gcgcccgcgg ccttcgccac gaccttccta
     2341 ctggacggcg acaacttcct cggcatacac cccgaggagg tcacgcgcga gaacatgggc
     2401 cgctaccaga tgacgggcga gccgcgcggc gtgggcgtcc gctccgtggt gaagggcagc
     2461 ccggccgagc gcgccggcct gcgcgagggc gacgtgatag tgcgcttcga cggcgaggcg
     2521 gtcacgtccc tgcgaaagct caaccggctg attgacgagt cggcgcccga gcacacggcg
     2581 cgcatcacgg tcttgcgcgg cggctccgag caggaggtct ccgccaagct cgaagcgcgg
     2641 cacgccttca tgccggccat cgagggcgtt gggccgaact tcgatgcgga ggccgcgcgc
     2701 cggctcgccg aagagcttgg caagaactcc gagaagttta agctcgacag cgaagagctg
     2761 cgcaagaagc tcgaagagct tcagcgcgct aaccccggcg gcttgtactc gttcagcttc
     2821 ggcaacagcc gccgcatagg cgtcgcgacc agcggcctcg gcaagcagct cgccgaatac
     2881 ttcggcgtct cgaacggcgt gctcgtcaac tcggtcgagg ccgggagccc cgccgagcgc
     2941 gcgggcataa aggccggcga cgttatcacg gaggccgacg gcacgaaggt aggcgacgcg
     3001 agcgacctct cctcagccat caaccgcagg ggggagggcg aagtcactct gacggtcgtg
     3061 cgcgagcgca agcagcgcac cgtccgcgtc acgcccgaga agcgcgagcc gcagggcttc
     3121 catatcaacc ccggctcgtt ccgcatagcg ccgcccgttg ctgcgctgcg cgccgtgcgg
     3181 gcagtgccgc gagcgcgagt cgccccccgc gtcagagctt tgcgcggctg gggccgtgcg
     3241 atttagcagg ggcgctagag gtcaagccga aagtcgcggg gcggagggac aggtcaccct
     3301 ccgccccgcg acttttcgtc gtcaggcggc tcccccgcag gctcttccgc ctcgccgcgc
     3361 gccgccccga gcgagagcaa gcctttgatg tcgaggaggt cgtgagggcg cccgttagcc
     3421 cgcttggccc gcagcagatg ttcgagcgac acaacgcgcg cggcggcctc gccaacgcgc
     3481 cggcgctccg acgcggccca cagctcggcg aacgggacgc agtagcgcgc gaacacgtca
     3541 acctctcgcc ccgcgcggtc gaacatgcgc aacaccgaca gcacggcgag cgggagcggg
     3601 atgctcggca cgaacccggc cgcggccaga gaacgcaggg cgcgcgccgc ctcttcgggc
     3661 gccgggtcta tgacgatgtc aaggtcggcc acgggccgcg cgtggccgtg cagcacgacg
     3721 gcgacgccgc tcacgactac gtagcgaacc ccgtcccgtt ccagccgctc gaagacgtta
     3781 gaataaatct cgggggccgt caggctcggc atgtctagtc cgccccgttt cggcttacga
     3841 ggcggaagtc tgcgacgagg ggtaagtggt ctgaggcgac gagcgccgtg cggctgcggt
     3901 gaagcgagag gcgctccagt tcgagcgagg ggtcgtagta aacgtggtcg aggtggaaga
     3961 gcgggagcgg gccggggtaa gtcctgcgcg tgcgtaggtg ctgtcgcacg tcggcgctgc
     4021 gaagctcctc gccgagcagg cgagaggcaa ggccgtgcgt ccactcgttg aagtcgccga
     4081 gcacgacgcg cgggcctgcg aggcgcccgt cgcgaagtat ctgctcgctt acgaggcggc
     4141 gcccctggtt gcgccgctcc atgtaggccg tgccgaggtg tacgttgaag acgtgcagca
     4201 cgggcgcggc gccgccatcg ccgagccgca cgtcaacgcg caggcagccg cgcggctcgc
     4261 gccagcgcca t
//
LOCUS       DASPKR010000368         3122 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_181876, whole genome shotgun sequence.
ACCESSION   DASPKR010000368 DASPKR010000000
VERSION     DASPKR010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3122)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3122
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181876"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..730
                     /locus_tag="VD968_09990"
     CDS             <1..730
                     /locus_tag="VD968_09990"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYE14758.1"
                     /translation="LDRPEKRNALTRHMIERLTDMFRWLGGRPGLRAVILSGEGPDFC
                     AGTDIAELEGLDEEGARLKAERGQEACDAVELCGVPVVAAVRGAAAGGGCELALACHM
                     RVAATGARFSLPEVKLGVIPAYGGTQRLARAVGAGRALAAMLAGEEIDAEEALRLGLV
                     NRVVAPEALTAEAEALARSVAETAAPLAARACLEAVTRGSRLSLEEGLKLEAELFAGL
                     FSTEDVREGTRAFLEKRRPSFKGR"
     gene            847..1320
                     /gene="ribH"
                     /locus_tag="VD968_09995"
     CDS             847..1320
                     /gene="ribH"
                     /locus_tag="VD968_09995"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: protein motif:HMM:NF013081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HYE14759.1"
                     /translation="MTHHGRLDAGGFRFALVSSRWNDFLTSRLVEGALDALERLGADA
                     ESVEHFRVPGSFEIPLLALKLAGSGRFDAVVCLGTVIRGQTPHFEYVAGEVTKGIAQA
                     AMQTGVPVIYGIVTADTLEQAIDRAGVKAGNKGFDAAVAAVELVNLYKDSFPGDG"
     gene            1398..1943
                     /gene="nusB"
                     /locus_tag="VD968_10000"
     CDS             1398..1943
                     /gene="nusB"
                     /locus_tag="VD968_10000"
                     /inference="COORDINATES: protein motif:HMM:TIGR01951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HYE14760.1"
                     /translation="MGSRRKARECALQMLFAADLGGAARPDELVRAYWEELGDQDLDE
                     GARDFATRLAVGTLSHLEEIDDRIRSRAEHWRISRMAVVDRNILRMAVNEFLREPTPR
                     TVAINEALEIARRFSTYEATQFINGILDAIKRDLDRERPQEDATPHPDDEPLAEAEGG
                     AEEGEGESGPDDEGGEKTASA"
     gene            2077..>3122
                     /locus_tag="VD968_10005"
     CDS             2077..>3122
                     /locus_tag="VD968_10005"
                     /inference="COORDINATES: protein motif:HMM:NF013767.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HYE14761.1"
                     /translation="MDDQLTREFLAESEELVEGLYADLELLRARREDGRGRRELVGRL
                     FRRAHTLKGTASAAGLDPAAEVAHEFESLLDAVRLGHAGLSDAVLDAFEEAASAVSSC
                     LGAASRGEHVEAPRAPLERLRALAAPQAGAEAKRAPSAAGVALPEELARSLTEFERQR
                     LREAVEEGARVFVVVADFNLTDFDEQFRRLSDALGERGEVVSTLPGVEAGAPDRVRFR
                     VLHATDDEAARLSERVAAFGAAVQECAREPAGEAAHVGEGAAAPAEPAAPMSHPALTV
                     RVSLEELDGLLAAAHELFAETAAALGESERARRVRARSAELEARLTALRMVPVRATLE
                     RAARAGRSAARAVG"
BASE COUNT          459 a         1072 c         1131 g          460 t
ORIGIN      
        1 gctcgaccgc cccgagaaga ggaacgcgct cacacggcac atgattgagc gcctgaccga
       61 catgttccgc tggttgggcg ggcggcccgg tctgagggcg gtgatcctga gcggcgaggg
      121 gccggacttc tgcgccggca ctgacatcgc ggagctcgaa ggcttggacg aagaaggcgc
      181 gcggctcaag gcggagcgcg ggcaggaggc gtgtgacgcg gtcgagctgt gcggcgtccc
      241 cgtcgtcgcc gcggtgaggg gcgcggccgc aggcggcggc tgcgagctgg cgcttgcctg
      301 ccacatgagg gtcgccgcca cgggcgcgcg cttcagcctg ccggaagtga agctgggagt
      361 gataccggct tacggcggca cgcagcggct cgcgcgcgcg gtgggtgcgg gccgcgcgct
      421 cgcggcgatg ctcgcgggcg aggagataga cgccgaggag gctctgcggc tcggcctggt
      481 caaccgcgtc gtcgcgcccg aggcgcttac tgccgaggcg gaggctctcg cccgctcggt
      541 cgcggagacg gccgctccgc tcgccgcccg cgcgtgcctc gaagccgtca cgcgcggctc
      601 gcgcctctcg ctcgaagagg ggctcaagct cgaagccgaa ctcttcgccg gcctcttctc
      661 gaccgaggac gtgcgcgaag gcacgcgcgc cttcctcgaa aaacgcaggc cctccttcaa
      721 aggcaggtga ggagtgaacc gccgtcggcg cgtcactctt cacttgtcac ccgttttgct
      781 cttctctata cttcaactgc tcttactccc taactattcg gagacggccg agacgccttg
      841 cagcccgtga ctcatcatgg acggttggac gccggggggt tccgcttcgc cctggtgtcg
      901 agccgctgga acgacttcct aacgtcgcgg ctggttgagg gcgcgctcga cgcgctcgaa
      961 cgcctcggcg ccgacgcgga gtcggtcgag cacttccgcg tccccggctc cttcgagata
     1021 ccgctgctcg cgctgaagct cgccgggtcg ggccgcttcg acgcggtcgt ctgcctcggc
     1081 acggtcatac gcgggcagac tccgcacttc gagtacgtgg ccggcgaggt cacgaagggc
     1141 atagcgcagg cggcgatgca gacgggcgtc cccgtcatct acgggatcgt gacggccgac
     1201 acgctcgagc aggcgattga ccgcgcgggc gtcaaggcgg gcaacaaggg gttcgacgcg
     1261 gccgtggcgg ccgtcgagct ggttaatctt tacaaggact ctttcccagg tgacgggtga
     1321 cgggtgacgg gtgatgagta aaaagccgtc tttaactcgt cacccgtcac ccgtcacccg
     1381 tcacttcatt tattcatatg ggttcaaggc gtaaggcgcg ggagtgcgcc ttgcagatgc
     1441 tctttgctgc tgacctgggt ggtgctgcgc ggcccgacga gctggtgcgc gcctactggg
     1501 aggagttggg cgaccaggac ttagacgagg gcgcgcgcga cttcgcgacg cggctcgccg
     1561 tcggcaccct ctcgcacctc gaagagatag acgaccgcat acgctcgcgc gccgagcact
     1621 ggcgaatctc gcgcatggcc gtcgttgacc gcaacatcct tcgcatggcc gtcaacgagt
     1681 tcctgcgaga gccgacgccc cgcaccgtcg ccatcaacga ggcgctcgag atagcacgcc
     1741 gcttctcgac ctacgaggcc acgcagttca tcaacggcat actcgacgcc atcaagcgcg
     1801 acctcgaccg cgagcgcccg caggaggacg ccacgcccca cccggacgac gagcccttgg
     1861 ctgaggccga gggcggcgcc gaagagggcg aaggcgagag cggccccgac gacgaaggcg
     1921 gcgagaagac ggcctcggcc taaaaagaag tttcaggctc cgagttccaa gttccggggc
     1981 gaagcgccgg gcgattcacg cacgaatcgc ccggcgcttc tttcttatag aaagagcttg
     2041 gaacttggcg accggaactt taaacttgac tcggggatgg acgaccaact gacgagagag
     2101 tttctggcgg agtcggagga gctggtcgag gggctctacg ccgacctcga gctgctgcgc
     2161 gcgcggcgcg aggacgggcg cgggcggcgc gagcttgtcg gccgcctctt ccgccgcgcg
     2221 cacacgctga aggggacggc ctcggcggcc ggcctcgacc cggccgccga ggtggcgcac
     2281 gaattcgagt cgctcctcga cgccgtgcgg ctgggccacg cgggcctcag cgacgccgtg
     2341 ctcgacgcct tcgaggaggc ggcctcggcc gtctcgtcct gcctgggcgc ggcctcgcgc
     2401 ggcgagcacg tcgaagcgcc gcgcgccccg ctcgaacgcc tccgcgcact tgccgcgccg
     2461 caggcgggcg cggaggcgaa gcgcgcgccc tcggcggcgg gcgtcgcgct gcccgaagag
     2521 ctcgcgcgct cgctcacgga gttcgagcgg cagcggctgc gcgaggccgt agaggagggc
     2581 gcccgcgtct tcgtcgtcgt cgcggacttc aacctcacgg acttcgacga gcagttccgc
     2641 cggctgagcg acgcgctggg cgagcgcggc gaagtcgtct cgacgctgcc gggcgtggaa
     2701 gcgggcgcgc ccgaccgcgt ccgcttccgc gtccttcacg cgaccgatga tgaggcggcg
     2761 cgcctctccg agcgcgtcgc ggcgttcggc gccgccgtgc aggagtgcgc gcgcgagccg
     2821 gccggcgaag ccgcccacgt tggcgaaggg gcggccgccc cagccgagcc ggccgccccg
     2881 atgtctcacc cggccctgac cgtgcgcgtg agcctcgaag agctcgacgg gctgctcgcc
     2941 gccgcgcacg agcttttcgc ggagaccgcg gccgcgctcg gcgaaagcga gcgggcgcgt
     3001 cgggttcgcg ctcgctcggc cgagctggaa gcgcgtctga cggcgctcag gatggttcct
     3061 gtgcgcgcga ctctcgagcg cgcggcgcgc gccggccgct cggccgcgcg cgccgtcggc
     3121 aa
//
LOCUS       DASPKR010000369         7977 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1731965, whole genome shotgun sequence.
ACCESSION   DASPKR010000369 DASPKR010000000
VERSION     DASPKR010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7977)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7977
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1731965"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..672)
                     /locus_tag="VD968_10010"
     CDS             complement(<1..672)
                     /locus_tag="VD968_10010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14762.1"
                     /translation="MKQRAVAHVGPLSLLLCVVFAVFLLERLVVRVVVAHVCAFLLER
                     AVAHLSAVSELRAVAHISAFSLLLSDVVAVFLLQRLVVRVVVADLCALLLERAVAHVF
                     DIAYVSAVVLVFCVVVAVLLADLVAVFFLERICVCECLVVRVVVAHLCPLLLERAVAH
                     LSAFSEQRAVANVGSLLQQRAVAHVGALSLLLCVVVAVFLLQCLIVRVVVAHLCALLL
                     ERAVAH"
     gene            1344..1997
                     /locus_tag="VD968_10015"
     CDS             1344..1997
                     /locus_tag="VD968_10015"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HYE14763.1"
                     /translation="MAETATFPLWQTATSLDAALSVKKPAADYELAQAAAAGDSKAFE
                     ELYARHSRRVYSLCLRMMANTAEAEDLTQEVFIQLHRKIGSFRGESAFTTWLHRMTVN
                     QVLMHFRKRGVRMEQTTDDGETPVQVVSGTENPNHMPVVDRIALDKAIGKLPPGYRSV
                     FVLHDVEGHEHEEISRILGCSVGTSKSQLHKARMKLRQLLTTGKSGRARRGIAAARR"
     gene            complement(2126..5602)
                     /locus_tag="VD968_10020"
     CDS             complement(2126..5602)
                     /locus_tag="VD968_10020"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choice-of-anchor Q domain-containing protein"
                     /protein_id="HYE14764.1"
                     /translation="MRRRAHPLCLFATSLAFFFLLTAARSASAATFTVDSLDDVGDAG
                     SNGVCATPAGACTLRAALQEASVSSNPDTINFSVTGTINLNAPLPNLVSVTINGPGSG
                     QLTVKRLNGFYSIFITSGTVSVSGLTISNGNAGGGNGGGVYNTGTLTMTDVVVSGNFA
                     SYGGGIFNYGALTMTDVTVSGNTSNALGGGILNEGPGRLSMTRVTVSGNTSTNHAGGG
                     IFNVGLLTMTNSTVSGNSALGYDGAGGGIYAYGRINLAGVTVSGNSSYHPGGGIFFNG
                     SGQGGELKGVTVAGNRATGNVGGGIYSQHGDVLLRSTLVSRNFRGPANTTIPDDLYGA
                     FRGDGTYNLVGACNCGLPAGPTNKLNVLDPKLGDLADNGGPTKTHALLAGSPALDAGT
                     SAGLGTDQRGAVRIFDDPSVFNASGGDGADIGAFEALPADDQDGVPDLSDACPGTPVG
                     ATVGASGCPADECLIPPPGMTSWWAGDDNAQDFIGNHHGTAVGGASYAAGKVGQAFSL
                     DGINDYFYFGTAAGNFATSNFSIDFWVKSSSAGRHTLLGKREGCTSGRWWDAALISGK
                     IVFSIEDVWLGPGVSFSSNSSVNDGEFHHVTLVREGSVLSIYIDGVLDKALDGSLAPP
                     FSSSITGPFLSNTAPLLMGISPCLGSGGVTAFGGQLDEVELFGRALAPQEIKALFEAG
                     SRGKCKTADLSITKTPSRDPAVVDRVLTYTLAVSNLGPDAASNVTVTDNLPTNAAYVS
                     TVTPQGTCSRSGSTVTCQLGSLAAGQSVEIEVRVKPNQPATLTNTASVASPTRDPDTS
                     NNSRTVQTQAVIAADLSVKKVASKSEALVNQIFNYKLTVKNDGPAEATGVAVTDGLPA
                     GLSFSSVETTQGSCAHSSGLITCQLGSLASGATAVVTIKVKPRQPGTLTNTATVTGDL
                     YDQDTTNNSATVTTAVIASADLSVRKRESADPVLVGQQFSYVISVTNLGFVQATGVSV
                     TDALPASMTFVSASSSQGTVTSAPPAGSTGTVMASLGSLAVGATAAVTITVEPSQAGV
                     FTNTATVSGEQSDHDTTNNTHKQQTTVVTLQKLLLSSTAVTGGCQPYPTGQAYLTGPA
                     PAGGVTVTLSSTTGAASVPASVFIAAGQVKSGAFTVTTLPVTSLQTGAVRATLGGKTV
                     GRGLTVSPGTCP"
     gene            5972..7336
                     /locus_tag="VD968_10025"
     CDS             5972..7336
                     /locus_tag="VD968_10025"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYE14765.1"
                     /translation="MRALRLGAMLRGRREGGAARWLIHAVISVALRLFFRRIEASGAS
                     LVPERGAVLFVLNHPNGLIDPALVFAALPRPVSFLAKSTLFRLPVLGSLLRAVGALPL
                     YRRADAGEDVSRNPMTFEECRRLLARGGAVALFPEGVSHSEPKLLPLKTGAARIALGA
                     AAPVLKIVPVGLYYTSKTSFRSEALLRFGEPIDVPAVEPAPDGEPPPVDVRELSSRIE
                     AGLRGVTVNAETEEQLDVARKAERLFSSVYEGLAVRLPLAERFESLRRMTDRLAGLLP
                     FSVSAEQLGRRILAHEGELRRAGLAPENLSLSTHSRWYVFRHFLLRAGAIALLSPLAL
                     AGAALHYPAYLACSVLARLFPKHGVDDIAPTVKILAALVLMPLTWLVAAALVFSRWGW
                     RWGLATLPLSALCGYVAMRSIEELYDLRGWFKAILLLARRRRLFLRLFAKSRALRDEI
                     SRLG"
     gene            7360..>7977
                     /gene="pepE"
                     /locus_tag="VD968_10030"
     CDS             7360..>7977
                     /gene="pepE"
                     /locus_tag="VD968_10030"
                     /EC_number="3.4.13.21"
                     /inference="COORDINATES: protein motif:HMM:NF003642.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepE"
                     /protein_id="HYE14766.1"
                     /translation="MTGRRLLLISNGSELLGEQPSEFFLAAVKDFLGAGVRRVAFVPY
                     ASVVKSYDDYAARVRSRFGGLGYEVEPVHEDENPAAVVRRADAVAVGGGNTFHLLKLM
                     YETGVLEAVRERASGGLPYVGWSAGSNVACPTVRTTNDMPIVEPPSLDALALVPFQIN
                     PHYTDATIENHHGETRDERLGEFTHANPGVRVVGLREGTMLRVEGS"
BASE COUNT         1293 a         2531 c         2816 g         1337 t
ORIGIN      
        1 gtgggcgacg gcgcgctcga gcaggagggc gcagaggtgg gcgacgacga cgcggacgat
       61 gaggcactgg aggaggaaga ccgcgacgac gacgcagagg aggagtgaga gggcgccgac
      121 gtgggcgacg gcgcgctgct gcaggaggga gccgacgttg gcgacggcgc gctgctcaga
      181 gaaggcgctg aggtgggcga cggcgcgctc gagcaggagg gggcagaggt gggcgacgac
      241 gacgcggacg acgaggcact cgcagacgca gatgcgctcg aggaagaaga ccgcgacgag
      301 gtcggcgagg aggaccgcga cgacgacgca gaagacgagc acgacggcgc tgacgtaggc
      361 gatgtcgaag acgtgggcga cggcgcgctc gagcaggagg gcgcagaggt cggcgacgac
      421 gacgcggacg acgaggcgct ggaggaggaa gaccgcgacg acgtcggaga ggaggagtga
      481 gaaggcgctg atgtgggcga cggcgcgcag ctcagagacg gcgctgaggt gggcgacggc
      541 gcgctcgagc aggaatgcgc agacgtgggc gacgacgacg cggacgacga ggcgctcgag
      601 gaggaagacc gcgaagacga cgcagaggag gagtgagagg gggccgacgt gggcgacggc
      661 gcgctgtttc acgaagagag agaggctgag aggaaggagt tgacggttga caggcgcggc
      721 gcctaccggg tcgaagttta tctcgacagg ctcggcacgc tcgtcgaagg caagccgtgg
      781 ataatctcga accccgtatt cgtccgctga agacggttta acaaaatccc cgtaaaaata
      841 ggcgcaaaca cgacttcgcc ccgcacaagc ctttcggccc gtgtggggcg ctttcgcggg
      901 ccggaagccc ggcccaatct cggagacggc gcgtacgcta ccgattaccg tagagaaacc
      961 gagtgtttgg ttcttctcac gcgtcagccc cagtgtgcgg ggaagcgcgt gtacggcctc
     1021 ctacaagggt tcgtccaagt gcggtaagtt tattcaccaa ctccgtcgct gtcaagattc
     1081 actttgactg cctccggcgc atacgatctg agcgccggcc tcgcagattc ccggcgctcg
     1141 gcaataacta gatagtgcag ccgatacacg ctttcaggct aaaaaagccc gccgggcgcc
     1201 cgtaaactgc tgatttccgg ttcatttcta tctcccggcg gtggcatttg gcttgctccg
     1261 agtggctccg cggcccctta gaggccgagg tggacgacgg gcggcgcccg ttttcaagcg
     1321 cccctagacg caggagactc gaaatggccg aaacggcgac attccccctc tggcagactg
     1381 caacctcgct cgacgcagcc ctctccgtaa agaagccggc cgcggactac gagctggctc
     1441 aggcggcggc cgcgggcgac tcgaaggctt tcgaggagct atacgcgcgc cactcgcgcc
     1501 gtgtctattc gctctgcctt cggatgatgg cgaacacggc cgaggcggag gacttgacgc
     1561 aggaggtctt catacagctc caccgaaaga tcgggagctt ccgcggcgag tcggcgttta
     1621 cgacgtggct gcaccgcatg acggttaacc aggtgctcat gcacttccgc aagcgcggcg
     1681 tccgcatgga gcagaccacg gacgacggcg agacgcccgt gcaggtcgtg tcaggcacgg
     1741 agaacccgaa ccacatgccc gtcgttgacc gcatcgcgct cgacaaggcg attgggaagc
     1801 tgccgcccgg ctaccgctcc gtcttcgtcc tgcacgacgt agagggacac gagcacgaag
     1861 agatttcgag gatactaggc tgctcggtag gcacgtcgaa gtcgcagcta cacaaggcca
     1921 ggatgaagct caggcagctt ttgacgacgg gcaagtccgg ccgcgcgcgc cgcggtatcg
     1981 ccgccgcgag aaggtaggcg gcccctgcgg agaagattta aaaccccgcc tgacttccgc
     2041 ggaagtcagg cggggtttca actttgtggc cgcgcgcgcc gctgctctag caaagttact
     2101 gccctttgcc tatcgccctg cttctctagg ggcaggtgcc gggggagacc gtcagccccc
     2161 tgcccacggt cttgcccccc agcgtcgccc tcaccgcccc cgtctgcaac gatgtcacag
     2221 gcaatgtcgt caccgtgaag gccccgctct tcacctgccc cgcggctatg aagacgctgg
     2281 caggcacgct cgccgccccc gtcgtgctcg acagcgtgac cgtcactccg ccggccggcg
     2341 caggccccgt caggtaggcc tgcccggtcg ggtagggctg acaacctccc gtcacggccg
     2401 ttgacgagag cagcagcttc tgcagagtca cgactgtagt ctgctgcttg tgggtgttgt
     2461 tagtcgtgtc gtggtcgctc tgctcgcccg agaccgtggc cgtgttggta aagacgccag
     2521 cctgagacgg ctcgaccgtt atcgtcacgg ccgccgtcgc cccgacggcc aagctaccca
     2581 gcgacgccat gaccgtcccc gtcgagcccg ccggcggcgc ggacgtgacg gtgccttgcg
     2641 aggaggaggc cgagacgaac gtcatcgagg ccggcagcgc gtcggtaaca ctcacgcccg
     2701 tcgcctgcac gaaccccagg ttcgtgacgc tgatgacgta ggagaactgc tggcccacca
     2761 gcacggggtc ggccgactcg cgcttcctca ccgaaaggtc ggcggaggct atgacggcgg
     2821 tcgtgacggt ggccgagttg ttcgtagtgt cctggtcgta taaatcgccc gtcaccgtag
     2881 cggtgttggt gagcgtgccg ggctggcgtg gcttgacctt tatcgtcacg acggccgtag
     2941 cgccggaggc gagcgagccg agctggcaag tgatgaggcc cgaagagtgg gcgcaggagc
     3001 cctgcgtggt ctcgacggaa gagaatgaga ggcccgccgg caggccgtca gtcaccgcga
     3061 cgcccgtggc ctcggcgggg ccgtcgttct taacggtcag cttgtagttg aatatctggt
     3121 ttacgagcgc ctcgctcttg gacgcgacct tcttgacgga gaggtctgcg gctatgacgg
     3181 cctgcgtctg cacggtgcgg ctgttgtttg acgtgtcggg gtcgcgcgtc gggctggcga
     3241 ccgaggcggt gttggtgagc gtcgccggct ggttgggctt caccctgacc tcgatctcga
     3301 ccgactgccc ggcggcgagg ctcccgagtt ggcaggtgac ggtcgagccc gagcgcgagc
     3361 aagtcccctg cggcgtcacc gtcgagacgt aggcggcgtt cgtcggcagg ttgtccgtca
     3421 cggtaacgtt agaagccgcg tcggggccga ggttgctgac ggcgagcgtg taggtgagca
     3481 cgcggtcaac gaccgcaggg tctctggaag gcgtcttcgt tatagagagg tcggccgtct
     3541 tgcacttgcc gcgggagccg gcctcgaaca gggctttgat ctcctgcggg gccagcgcgc
     3601 ggccgaagag ctcaacctcg tcgagctgcc cgccgaaggc tgtaacgccg ccggagccca
     3661 ggcacgggct tatgcccatc aggagcggcg ccgtgttcga caggaagggg ccggttatgg
     3721 aagacgagaa gggaggagct aggctcccgt cgagcgcctt gtcgagcacc ccgtctatat
     3781 agatgctgag cacggagcct tcgcgcacga gcgtgacgtg gtggaactcc ccgtcgttga
     3841 ccgacgagtt tgagctgaag gagacgcccg gcccgagcca gacgtcttcg atgctgaaga
     3901 ctatcttgcc ggagatgagc gccgcgtccc accagcggcc gctcgtgcac ccctccctct
     3961 tgcccagaag ggtgtgcctg ccggccgagc tcgacttaac ccagaagtct attgagaaat
     4021 tcgacgtggc gaagttgccg gcagccgtgc cgaagtagaa gtagtcgtta ataccgtcca
     4081 gggagaaagc ctgcccgact ttgcccgcgg cgtatgacgc accgcccacg gcggtgccgt
     4141 ggtggttgcc gataaagtcc tgtgcgttat cgtcgcccgc ccaccacgag gtcatgccgg
     4201 ggggcggtat taaacactcg tcggccgggc agcccgaggc gccgacggtc gcgccgacgg
     4261 gcgtgccggg gcaggcgtcc gagaggtcgg ggacgccgtc ctggtcgtcg gcgggcagcg
     4321 cctcgaatgc gccgatgtcg gcgccgtcgc ctcccgaggc gttaaagacc gatgggtcat
     4381 cgaagattcg gacggcccca cgctggtccg tcccgagccc ggccgaggtg cctgcgtcga
     4441 gggcggggct gcccgcgagg agcgcgtgcg tcttcgttgg gccgccgttg tcggcgaggt
     4501 cgccgagctt ggggtcgagg acgttgagtt tgtttgtggg gccagcaggg agcccgcagt
     4561 tgcaggcccc gacgaggttg taggtgccgt cgccgcggaa ggcgccgtag aggtcgtcgg
     4621 ggattgtggt gttggcaggc cccctgaagt tgcgggacac cagcgtgctc cgcagcagga
     4681 cgtcgccgtg ctgactgtag atgcccccgc cgacattgcc cgtcgcgcgg ttgccggcga
     4741 ccgtcacccc cttcagttcg ccgccctggc cggagccgtt gaagaagatg ccgccgcccg
     4801 gatggtatga ggagttgccg ctgacggtga cgccggccag gtttattctc ccgtaggcgt
     4861 agatgcctcc ccctgcgccg tcatagccca aggcggagtt gccgctcacg gtgctgttcg
     4921 tcatcgtcaa gagcccgacg ttaaagatgc ccccgcccgc atggttcgta gaggtgttgc
     4981 cgctgacggt cactctcgtc atagacaacc tacccgggcc ttcattcaat atgccgccgc
     5041 ccagggcgtt cgaggtgttg ccgctgaccg taacgtccgt catcgtcaac gcgccgtagt
     5101 tgaatatgcc cccgccgtaa gacgcgaagt tgccgctgac gacgacgtcc gtcatcgtca
     5161 gcgtgcctgt gttatagacg cctcccccgt tccccccgcc ggcgttgccg ttgctgatag
     5221 tcaggccgga gacgctcacc gtgcccgacg tgataaagat gctatagaag ccgttgagcc
     5281 tcttgaccgt aagctgcccc gagccggggc cgttgatagt cacgctgacg aggttcggca
     5341 gcggggcgtt caggtttatc gtgccggtga cggagaagtt tatggtatcg gggttggagc
     5401 taacgctcgc ctcttgaagg gcggcgcgca gcgtgcacgc gccggccggg gtggcgcaca
     5461 caccgttaga cccggcgtcc ccgacgtcgt cgaggctgtc aacggtgaac gtggcggccg
     5521 acgcgctccg ggccgcggtg agcaggaaga agaaggcgag ggacgtggcg aacaggcaga
     5581 gggggtgggc gcgtcttcgc atgagcgggg gcagctcctc aacttatcaa cgaaggattt
     5641 ccgggttcgg gatgccggcc ggcatcgcgc ctcttctggc gcttgagtgg cggcggcgaa
     5701 ggttgggtta gcgaggccgg gctttcgcgc cgggttaggg cgcccgcgcc ggggcagttc
     5761 gcgcgggcgg ctggcagtgc tgacagcgcc gcagagaata cgacacggtt tttcggcttg
     5821 tcaaacagtc cgaccgaagc gctccgttgc tcacatcaga gtatgagcgc gcgcccgcga
     5881 acgtttcgcg cgggaggtcg gcggcgccgc gcccggctgc aggttgtaat gcgccgcggc
     5941 gggtgcgagt attggcgcga tgccggagga cgtgagagcc ctgcgtttgg gcgcgatgct
     6001 gcgggggcgg cgggagggcg gggcggcgcg ctggctcatt cacgccgtca taagcgtcgc
     6061 gctgcgcctc ttcttccggc gcatagaggc gagcggcgcg tccctcgtcc ccgaaagagg
     6121 ggcagtcctc ttcgtcctca accacccgaa cgggctcata gacccggcgc tcgtcttcgc
     6181 ggcgctgccc cggcccgtct ccttcctcgc gaagtcaact ctcttccgcc tccccgtgtt
     6241 gggctcgctc cttcgcgccg tgggagccct gccgctctac aggcgcgcgg acgcgggcga
     6301 ggacgtttcg cgcaacccta tgacgttcga ggagtgcagg cggcttctcg cgcgcggcgg
     6361 cgccgtcgcg ctcttccccg agggcgtctc gcacagcgag ccgaagcttt tgccgctcaa
     6421 gacgggcgcg gcgcgcatag cgctcggcgc cgccgcgccc gtgttgaaga tagtcccggt
     6481 tgggctctac tacacttcca agacttcgtt ccgcagcgag gcgctcttga ggttcggcga
     6541 gccgattgac gttcccgcgg tcgagcccgc gccggacggc gagccgccgc cggtggacgt
     6601 gcgcgagctt tcgtcgcgca tcgaggcggg ccttcgcggc gtgaccgtca acgccgagac
     6661 cgaggagcag ttggacgtgg cgcgcaaggc cgagcggctc ttctcgtccg tctatgaggg
     6721 cttggccgtc cggctcccgc tcgccgagcg cttcgagtcg ctgcgccgca tgacggacag
     6781 gctggcgggg ctgctcccct tctccgtcag cgccgagcag ttgggccggc gcatactcgc
     6841 gcacgagggc gagctgcgcc gcgccgggct cgcgcccgag aacctatcgc tctcgacgca
     6901 ctcgcgctgg tacgtcttcc gccactttct gctgcgcgcg ggcgctatcg ccctgctctc
     6961 gccgcttgcg ctcgcgggcg cggcgctgca ttatccggcg tacctcgcgt gctctgtgct
     7021 cgcgcgcctg ttcccgaagc acggcgttga cgacatcgcg ccgacggtca agattctcgc
     7081 tgcccttgtg ctcatgccgc tcacgtggct cgtcgccgcg gcgctcgtct tctcgcggtg
     7141 gggctggcgt tgggggctgg caacgctccc gctctcggcc ctgtgcggtt acgtggcgat
     7201 gcgctcgatt gaagagcttt acgacctgcg cggctggttc aaggcgatac tgctgctcgc
     7261 gaggcggagg cggctgttcc tgcgcctctt cgcgaagagc agggcgctac gcgacgagat
     7321 aagcaggctc ggatagattc cgcgaccggg ggatttttaa tgacgggcag aaggcttctc
     7381 ttaatcagca acggctcgga gcttctgggc gagcagccgt ccgagttttt cctcgcggcc
     7441 gtcaaagact ttctcggcgc gggcgtcagg cgcgtcgcct tcgtccccta cgcctcggtc
     7501 gtaaagagct acgacgacta cgccgcgcgc gtgcgctcgc gcttcggcgg gctcggctac
     7561 gaggtcgagc ccgtccacga agatgaaaac ccggccgcgg tcgtcaggcg cgcggacgcc
     7621 gtggccgtgg gcggcggcaa caccttccac ctgctcaaac tgatgtacga gacgggcgtg
     7681 ctcgaggccg tgcgcgagcg cgcgagcggc gggctgccct acgtcgggtg gagcgcgggg
     7741 tcgaacgtgg cctgccccac ggtgaggacg acgaacgaca tgcccatcgt cgagccgccc
     7801 tcgctcgacg cgctcgccct cgtccccttc cagataaacc cgcactacac ggacgcgacc
     7861 atcgagaacc accacggcga gacgcgcgac gagcgcctgg gcgagttcac gcacgccaac
     7921 cccggcgtgc gcgtcgtcgg cctgcgcgaa ggcactatgc tccgggtcga gggctcg
//
LOCUS       DASPKR010000370         3198 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1475910, whole genome shotgun sequence.
ACCESSION   DASPKR010000370 DASPKR010000000
VERSION     DASPKR010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3198)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3198)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3198
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1475910"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..356
                     /locus_tag="VD968_10035"
     CDS             <1..356
                     /locus_tag="VD968_10035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14767.1"
                     /translation="SMRRYDQEAGQGAVPMPMIAHSAYSRLVVPSFVVDISEFVETKL
                     EAIRAHASQFFNPASKEPQTRISEENFLKQLEHRWRYYGSLIGVAAGEAFYVREALNV
                     HDPFELLTRPMNIYS"
     gene            complement(366..770)
                     /locus_tag="VD968_10040"
     CDS             complement(366..770)
                     /locus_tag="VD968_10040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14768.1"
                     /translation="MGFFSKLKKVVAGVDKGAVLAQAALPGKAGKVAGGVAEGTGVVT
                     TIVQQLQSQGQTSSPPASAPADPNQQAVLATAVAVDDHEERIKELEQLLARLKAGGSG
                     QQPTGGQTGGGQSPSGGGPSSSGGGGQQPSHS"
     gene            complement(849..1391)
                     /locus_tag="VD968_10045"
     CDS             complement(849..1391)
                     /locus_tag="VD968_10045"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE14769.1"
                     /translation="MVELETERLRLRMWRLEDYEWYARTHADEEVMRYLAPNGKPMTR
                     HEAWRSLAFIVGHWQLLGYGHWAVEEKSSGMLVGRVGFLNPEGWPGFELGWTLAREHW
                     GRGFATEAARRAMDYAFDDLGRDHVISLIQPANQNSIRVAERLGEKPEGRTKLFGDLE
                     VLIYGISREDWRAAASQPRA"
     gene            complement(1414..2391)
                     /locus_tag="VD968_10050"
     CDS             complement(1414..2391)
                     /locus_tag="VD968_10050"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYE14770.1"
                     /translation="MSRLSKLWKGLAAGGAAGVAAMVALNSAVERGAPVPEAGALGGE
                     PGTFRWKHGQIFYRHAGPEGTPPVLFVHGIGAGARSFMWRRNFEPISRDLRAYAIDLL
                     GFGYSDKPPTAPYSSDLYVELISDFLRERVGRPAAIVAHTLSAAFAVRVADESPELVS
                     SLVLVSPTGASSLSARPGMAGAAFYGLLHSPVLGTSFYNAVTSERSIRDYARKQLFYQ
                     KRFATPRLVAHYYAVSHLPGAQHAATAFISGYMNTDIREAFARLRQPVTIAWGRQDTT
                     NPIEQAGLLLGLNPRARLEVFDRCRLMPQEEHAERFNSLLRETLRPRPS"
     gene            complement(2473..>3198)
                     /locus_tag="VD968_10055"
     CDS             complement(2473..>3198)
                     /locus_tag="VD968_10055"
                     /inference="COORDINATES: protein motif:HMM:NF021653.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HYE14771.1"
                     /translation="LVNRVKLYTREEPILEAFGVQAELDKAIKPRVWLKSGGYLVINQ
                     TEALVAIDVNTGKFVGRGGTRLEDTITRTNMEAVEEIARQIRLRDLGGIIVLDLIDME
                     ERRNRARVLSALQDALRSDKSPTKVLSYNDFGLVIMTRKRVKQSLERTLCSPCPYCTG
                     SGLVKSPQTVCYEILEEARSLARAQDGERHKQTTLRINPEVARALRSSERDVLAEIEE
                     YLGPVDVTSDEHVHQEQFDFAFI"
BASE COUNT          470 a         1090 c         1108 g          530 t
ORIGIN      
        1 ccagcatgcg ccgctacgac caggaggcgg ggcagggggc cgtgccgatg ccgatgatcg
       61 cgcactcggc ctactcgcgc ctggtcgtgc cgtccttcgt cgtggacatc tcggagttcg
      121 tcgagacgaa gctcgaagcc atacgcgcgc acgcctcgca gttcttcaac cccgcgtcga
      181 aggagccgca gacgcgcatc agcgaggaga acttcctcaa gcagctagag caccgctggc
      241 gctactacgg ctccctcata ggcgtcgccg ccggggaggc cttctacgtc cgcgaggccc
      301 tcaacgtcca cgaccccttc gagctgctca cgcggcccat gaacatctac tcctagcggc
      361 agccctcaag agtgcgaggg ctgctgaccg cccccgcccg aggacgacgg cccgccgccc
      421 gagggcgact ggccccctcc cgtctggccg ccggtcggct gctggcccga gccgccggcc
      481 ttgagccggg cgagcaactg ctccaactcc tttatgcgct cctcgtggtc gtcaactgcg
      541 acggccgtgg cgagcacggc ctgctggttc gggtctgcgg gcgcggaggc gggcggcgaa
      601 gaagtctgcc cctgcgactg caactgctgg acgatggtcg tcaccacgcc cgtgccttcg
      661 gccacgccgc ccgcgacctt gccggccttg cccggcagcg ccgcctgcgc gagcacggcc
      721 cccttgtcaa cccccgcaac gaccttcttg agctttgaaa agaaccccat ctttttcggc
      781 ctcctcgtgg gtggtttgaa acaactttcg tgaatcccgc cccctgctcg ccctcgtaag
      841 tcaatgcctc acgcccgcgg ctgcgacgcc gcggcgcgcc agtcctcgcg gcttatgccg
      901 tagatcaaga cctctaagtc gccgaagagt ttcgtccgcc cctccggctt ctcgcccagc
      961 cgctcggcca cgcgaatgga gttctggttg gccggctgta tgaggcttat cacgtggtcg
     1021 cggccgaggt cgtcgaaggc gtagtccatc gcgcggcggg cggcctcggt ggcgaagccg
     1081 cggccccagt gctcgcgcgc gagcgtccag cccagctcga agccgggcca gccctcgggg
     1141 tttaggaagc ccacgcggcc gacgagcatc ccgctcgact tctcctccac ggcccagtgg
     1201 ccgtagccga gcagttgcca gtggccgacg atgaaggcga ggctgcgcca cgcctcgtgg
     1261 cgcgtcatcg gcttgccgtt cggggcgagg tagcgcatca cctcctcgtc ggcgtgtgtg
     1321 cgcgcgtacc actcgtagtc ttcgaggcgc cacatgcgga gcctcagccg ctcggtttcg
     1381 agttcgacca tgacgggttc acctctcgcg gccttacgac ggccgcgggc ggagtgtttc
     1441 gcgaagcagc gagttgaaac gctcggcgtg ctcctcctgc ggcatcagcc ggcagcggtc
     1501 gaagacttcg agccgcgcgc gcgggttgag gccgagcagg aggcccgcct gctctatggg
     1561 gttcgtcgtg tcctgccgcc cccacgctat cgtgacgggc tggcgcagcc gcgcgaacgc
     1621 ctcgcgtatg tcggtgttca tgtagccgga gatgaaggcc gtagcggcgt gctgcgcgcc
     1681 gggcaggtgg ctcacggcgt agtagtgcgc gaccagccgc ggcgtggcga agcgcttctg
     1741 gtagaagagc tgcttgcgcg cgtagtcgcg tatgctgcgc tcgctcgtca cggcgttgta
     1801 gaaggaggtg ccgagcacgg gcgagtgcag aagcccgtag aaggccgcgc ccgccatgcc
     1861 gggccgcgcg ctcaggctgc tcgcgcccgt gggcgagacg aggacgagcg acgagaccaa
     1921 ctcgggcgac tcgtcggcga cgcgcacggc gaaggccgcg ctcagcgtgt gcgcgacgat
     1981 tgccgcgggg cgtcctacgc gctcgcgcag gaagtccgag atgagctcga cgtagaggtc
     2041 tgaggagtag ggggcggtcg gcggcttgtc cgagtagccg aagccgagga ggtctatggc
     2101 gtaggcgcgc aggtcgcgcg agatcggctc gaagttgcgg cgccacatga aggagcgggc
     2161 gccagcgcct atgccgtgga cgaagaggac gggcggcgtg ccttccggcc ccgcgtgccg
     2221 gtagaagatt tggccgtgct tccagcggaa cgtcccgggc tcgccgccga gcgcgcccgc
     2281 ctccggcacg ggcgccccgc gctcgaccgc ggagttcaag gcgaccatcg ccgccacgcc
     2341 cgccgcgccg cctgccgcca accccttcca gagtttgctg agcctgctca tagggacgca
     2401 gtggagggcg gagggcggcg agtaagacaa gcccttaaac ttgtcacccg ccgccctccg
     2461 ccctccaccg ctttagatga acgcgaagtc gaactgctcc tggtggacgt gctcgtcgct
     2521 ggtcacgtca acggggccga ggtactcctc tatctcggca agcacgtcgc gctcggacga
     2581 gcgcagggcg cgcgcgacct cggggttgat gcgcagcgtc gtctgcttgt ggcgctcgcc
     2641 gtcctgcgcg cgggcgaggc tgcgcgcctc ctcgagtatc tcgtagcaga ccgtctgcgg
     2701 cgacttcacg agccccgagc ccgtgcagta agggcagggc gagcagagcg tgcgctctag
     2761 ggactgcttg acgcgcttgc gcgtcatgat gacgaggccg aagtcgttgt aggagagaac
     2821 cttcgtcggc gacttgtcgg agcgcagcgc gtcctgaagc gcggagagca cgcgggcgcg
     2881 gttgcggcgc tcctccatgt caatgaggtc gaggacgatg atgccgccca ggtcgcgcag
     2941 gcgtatctgg cgcgctatct cctccacggc ctccatgttg gtgcgggtga ttgtgtcttc
     3001 gagccgcgtg ccgccgcggc cgacgaactt gccggtgttc acgtcaatgg cgacgagcgc
     3061 ctcggtctgg ttgatgacga ggtagccgcc cgacttgagc cagacgcggg gcttgatggc
     3121 cttgtcgagc tcggcctgca cgccgaaggc ttcgagtatc ggctcttcgc gcgtgtagag
     3181 cttgacgcgg ttgacgag
//
LOCUS       DASPKR010000371         3369 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1863262, whole genome shotgun sequence.
ACCESSION   DASPKR010000371 DASPKR010000000
VERSION     DASPKR010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3369)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3369
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1863262"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VD968_10060"
     CDS             <1..252
                     /locus_tag="VD968_10060"
                     /inference="COORDINATES: protein motif:HMM:NF027338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0016052 - carbohydrate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding family 9-like protein"
                     /protein_id="HYE14772.1"
                     /translation="EKDWHYRSGMTAAARAGEGSVVVGLSVPWKSVGGAPRAGERWRA
                     NLFRCVGSGPGRGYLAWQPTHTEEPFFHVPEKFGWLKFK"
     gene            complement(263..682)
                     /locus_tag="VD968_10065"
     CDS             complement(263..682)
                     /locus_tag="VD968_10065"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HYE14773.1"
                     /translation="MPERLRLIAGRLREFVGNRRRAPRFEALLPVVVSLLDARANSHP
                     ATAAGHTRDLSESGLGVVLPGIRIGDRYLAGEGLTLRVTLKLPGAHARLYGTPVRYER
                     LEAEGQPGAGFLVGIRITEADDEDRRLLRDYLQKLKK"
     gene            complement(859..2775)
                     /locus_tag="VD968_10070"
     CDS             complement(859..2775)
                     /locus_tag="VD968_10070"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HYE14774.1"
                     /translation="MSTNTKSRRALFALFRAALLAPLVALSAPEAAARQAEVEVEVEA
                     ATEAAKEEEPKSSVYGKAVYDGTGRPVRRARVVLLPHSPDSRATERSGLTDGEGQFRI
                     TKVPRGRYFVAVDVKGVLSPMSFLDIEQANKSRRPDMTQVGDNFETVEIDGKADKEIT
                     VRARRGGAIGGRVTYSDGEPAVNIIVHLMRVKDGRPVPFLNGLGAGAIFGMRTDDRGV
                     YRVSGLPAGEYVVGVAEAVEHADGEGDASRYSYGAEFGAMGSPFGLSFHPKAVRPEDA
                     EVVRVRAGEEIEGVDVTIADREARVIAGTVRGKRDKAPVAGATVTFRSKDGGMTIVAL
                     MYNAGGSQSVSTDEQGRWQFKELPDGVYVVSARPPSQYEPEVELDEALGGGDGEQGQQ
                     QLRPARPSVPKKKKLTPKEQEVRVSGGDVRDVVIELSEGATISGTTVFEGGFNEGENV
                     NIYALRADGVPGEEPAVSSSDSPSDGKFLIEGVPPGKVHLRFNQFGPTVKDRYIKSMT
                     WRGKDLLREPLEVAEGAEVDGVRIVFSTDVATLDVRAVTAKGKLPAAGVNVTVVPTDP
                     VKWPRPDAQASCVTDDAGRCTLTTAPDEYFVMFTDGLGALAEAEIRERAAAAPRLKLA
                     GGEKRGFELVVPGQ"
     gene            complement(2812..>3369)
                     /locus_tag="VD968_10075"
     CDS             complement(2812..>3369)
                     /locus_tag="VD968_10075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14775.1"
                     /translation="AAGPPEDQAGSGVYTGSSYRGQFEIEGLTPGKFTLRAYAPDGER
                     EVFYLKSITWNGKDLMQEFLEVAEGQTIEGVNVVFTSGAATLRVRAVAAADGGPAPGV
                     KVWLLPADVSRWATDSRQDACVTGDDGACPVTAPPGEYVVLLAPRGVPAAAYEAELMK
                     QAVGAPRVSLLAHETESLELVVPHR"
BASE COUNT          454 a         1215 c         1156 g          544 t
ORIGIN      
        1 gagaaggact ggcactaccg ctcagggatg acggccgccg cgcgcgccgg cgagggctcg
       61 gtcgtcgtag gccttagcgt gccgtggaag tctgtgggcg gcgcgccgcg cgcgggcgag
      121 cgctggcgcg cgaacctctt ccgctgcgtg ggctcaggcc ccggccgcgg ctacctcgcc
      181 tggcagccca cgcacaccga agagcccttc ttccacgtcc ccgaaaaatt cggctggctg
      241 aaattcaagt agcctgcgcc gactacttct ttaacttttg caggtagtct ctgaggagcc
      301 gtcggtcttc gtcgtcggcc tcggtgatgc gtatgccgac gaggaagccc gctccgggct
      361 ggccctcggc ttcgagccgc tcgtagcgga cgggcgtgcc gtagaggcga gcgtgcgcgc
      421 cggggagctt caaggtgacg cgcagcgtca gcccctcgcc cgccaggtag cggtcgccga
      481 tgcgtatgcc gggcagcacg acgcccaggc cgctctcgct gaggtcgcgc gtgtggcccg
      541 ccgctgtcgc cgggtgcgag ttagccctag cgtcgagcag cgagacgacc acggggagca
      601 gcgcctcgaa gcgcggagcg cgccggcggt tccctacgaa ctcgcgcagg cggccggcga
      661 ttaatcggag tcgttccggc attcgcgccc tccggtgcgc gggcggccgc gacggtacgg
      721 ggcctcggga gattaaaagg ttattacggg gagagtggcg gggctaaggg cgccgccgac
      781 gagcagccgt ccgtctcggc gtgcggggca ggcgccgtta aagattttag acgccgaggc
      841 cgcccgcgcg caatcgcctc actgccccgg cacgaccagc tcgaagcccc tcttctcgcc
      901 gcccgcgagc ttcaggcgcg gggccgcggc ggcccgctcc cttatctccg cctccgcgag
      961 cgcgccgagg ccatccgtga acatgacgaa gtattcgtcc ggcgccgtcg tcagcgtgca
     1021 gcgccccgcg tcgtccgtga cgcagctcgc ctgcgcgtcc ggcctcggcc acttcacggg
     1081 gtctgtgggg acgaccgtga cgtttacgcc cgcggcgggc agcttgccct tcgccgttac
     1141 tgcgcgcacg tcgagcgtcg cgacgtccgt ggagaagact atgcgcacgc cgtccacttc
     1201 ggcgccttcg gcgacttcga gcggctcgcg cagaaggtct ttgccgcgcc acgtcatgga
     1261 cttgatgtag cggtccttga cggtcgggcc gaactggttg aagcgcaggt ggactttgcc
     1321 gggcggcacg ccctcgatga ggaacttgcc gtcggacggc gagtcggagg agcttacggc
     1381 cggctcctcg cccggcacgc cgtccgcgcg caacgcatag atgttcacgt tctcgccctc
     1441 gttgaagccg ccctcgaaga cggtcgtgcc ggagatggtg gcgccctcgc tgagctcgat
     1501 gaccacgtcg cgcacgtcgc cgcccgagac gcgaacctcc tgctccttcg gcgtgagctt
     1561 cttcttcttc ggcacggagg ggcgcgcggg acgcaactgc tgctgcccct gctcgccgtc
     1621 accgccgcca agggcctcgt ccagttcaac ctcgggctcg tactgcgagg gcggccgggc
     1681 cgagacgaca tagacgccgt cgggcagctc cttgaactgc cagcggccct gctcgtccgt
     1741 cgagacgctc tgcgagccgc ccgcgttgta catgagcgcc actatcgtca tgcccccatc
     1801 cttcgacctg aaagtgacgg tggcgcccgc gacgggcgcc ttgtcgcgct tgccgcgcac
     1861 ggtgccggct atgacgcgcg cctcgcggtc ggcgatggtc acgtcaacgc cctcgatctc
     1921 ctcgccggcg cgcacgcgca cgacctcggc gtcctccggg cgtacggcct tcgggtggaa
     1981 gctcagcccg aaggggctgc ccatcgcgcc gaactcggcc ccgtagctgt agcgggacgc
     2041 gtcgccctcg ccgtcggcgt gctcgacggc ctcggccacg ccgacgacgt actcgcccgc
     2101 gggcagcccc gacacgcgat agacgccgcg gtcgtccgtc ctcatgccga agatggcgcc
     2161 tgcgcccagg ccgttcagga acgggacggg gcggccgtcc tttacgcgca ttaggtggac
     2221 gatgatgttg acggctggct cgccgtccga gtaggtgacg cgcccgccga tggccccgcc
     2281 gcggcgcgcg cgcaccgtta tctccttgtc ggccttgccg tcaatctcga cggtctcgaa
     2341 gttgtcgccg acctgcgtca tgtcggggcg gcgcgacttg ttggcctgct cgatgtcgag
     2401 gaagctcatc ggcgagagca cgcctttcac gtcaacggcg acgaagtagc ggccccgcgg
     2461 gactttcgtg atgcggaact gcccctcgcc gtccgtgagg cccgagcgct cggtggcgcg
     2521 gctgtcgggg ctgtgcggca ggagcaccac gcgcgcgcgc ctgacggggc ggcccgtgcc
     2581 gtcgtaaacg gccttgccgt aaacgctcga cttcggctcc tcctccttgg ccgcctccgt
     2641 cgcggcctcg acctcgacct cgacctcggc ctgcctcgcg gcggcctccg gcgccgagag
     2701 cgcgacgagg ggggcaagca gggccgcccg gaagagcgcg aagagagcgc gccgcgattt
     2761 agtatttgtg ctcatggtct tcgtaaggtc ttcgggccga agccgccggc ctcagcggtg
     2821 cggcactacc agctccaagg actccgtctc gtgcgcgagc agcgagacgc ggggcgcgcc
     2881 cacggcctgc ttcatcagct ccgcctcgta ggccgctgcc ggcacgccgc gcggcgccag
     2941 taggacgacg tactctccgg gcggcgccgt cacagggcac gcgccgtcgt cgccggtgac
     3001 gcacgcgtcc tgccgcgagt cggtcgccca gcgtgacacg tcggccggca gcagccaaac
     3061 cttcacgccg ggcgcggggc cgccgtccgc cgccgccacg gcgcgcacgc gcagcgtcgc
     3121 tgcccccgag gtgaagacga cgttcacgcc ctcgattgtc tgcccctctg cgacctcaag
     3181 gaactcttgc ataaggtctt tgccgttcca cgttatggac tttaagtaga acacctcccg
     3241 ctcgccgtcg ggcgcgtagg cgcgcagcgt gaacttaccc ggcgtcagcc cctctatctc
     3301 gaactggccg cgatacgagc tgccggtata gacgccgctc cccgcctggt cttcgggggg
     3361 gccggcggc
//
LOCUS       DASPKR010000372         5258 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1863272, whole genome shotgun sequence.
ACCESSION   DASPKR010000372 DASPKR010000000
VERSION     DASPKR010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5258)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5258
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1863272"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(9..425)
                     /locus_tag="VD968_10080"
     CDS             complement(9..425)
                     /locus_tag="VD968_10080"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE14776.1"
                     /translation="MANDLQGAPPDGRTPLVLVADDDDDTRTLFSIMLGMRGCAVIEA
                     ADGEEAVRLAESAGPDLILMDGSLPRLDGFTAARRIRKTRNVPIVFVSGHAEPSFLAL
                     AREAGCDEYLVKPPSLDHLGRVLQQYLGVGERAFAA"
     gene            complement(909..1562)
                     /locus_tag="VD968_10085"
     CDS             complement(909..1562)
                     /locus_tag="VD968_10085"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYE14777.1"
                     /translation="MGKLRVFLADDHAVLREGLRMLVEAQPDMECVGEASDGRTAVRQ
                     VTELLPDVAVLDVSMPEMNGLQAAELIIRCCPDAKIITLTRHADDGYLQQLLKAGVSG
                     YVLKQSASAVLLTAIRAVASGQTFLDPAVTGKVVGSYVAKSASKAAVPQNEPSERERE
                     VLRMIAWGYSNKEIAARLDLSVKTVEAHKANAMRKLGMRSRIDIVRYAILQGWLQNT"
     gene            complement(1565..>5258)
                     /locus_tag="VD968_10090"
     CDS             complement(1565..>5258)
                     /locus_tag="VD968_10090"
                     /inference="COORDINATES: protein motif:HMM:NF013867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HYE14778.1"
                     /translation="EEGGVTIAQDPSEAEHAMMPRSAAETGLVDFILPVAEIPAKIVS
                     LKENAERITLPPPDAPPRGVDEEALREVLVLLRARTRHDFTNYKRTTLLRRIERRLQV
                     TESEDLRAYIEHIRRRPEELHGLLRDLLISVTNFFRDPQAFARLEADVIPKLFEGRGP
                     GDQIRVWVSGCATGEEAYSIAMLLSERADTLPSPPGIQVFATDIDEDALAAARNGAYP
                     STIAADVAPERLKRFFVREGPYYRVKRELRETVLFAPHNILLDPPFSKLSLVSCRNLL
                     IYINRNMQERVLEIFHFALKPEGYLFLGSSESADGLGDLFTPVNKKYRIFKRSEESAD
                     SFRRPPPPPALGRWAPGPATVPQAPGAPVLAEGATYGEMHYRMIEALAPPSVLVNGDY
                     DIVHLSEHAGRYLRLSGGEPTRNLLKVVHPGLQLELHSLLLSAGQHGQVTSAPLPVEI
                     EGSQHFVRVTVRPLVSPQTRSGFKLVLFDESAAAPPPEGEGGGAQAAAPPAAAAQPAP
                     GLEPIVRQLEAELERAREQLRATIEEYETSTEELKASNEELQAMNEELRSASEELETG
                     KEELQSVNEELATLNAELRDKIEEIGRSNSDLHNLLASTQIATLFLDRHMRLKRYTPS
                     AQELFNIIPGDVGRPLVHVTHKLDYPSLVEDADGVLRTLHTVEREVGATGGRHFLARM
                     LPYRTTDNKIDGVVVTFTDITERKRAQQALRESEEQFRRAIEDAPIPIIMHAEDGEVL
                     QISRAWTELTGYTAEEVPTLHAWLTRACGEGADDVREHVHGLFKGDKGTINLEFPVRT
                     RDGEVRHWSFSASSPGALRDGRRFVIGMASDITERKRVEEELRANEERLRLVVETAED
                     YAIMLLDSGGRYTDWNTGAEKMFGYTKDEAVGRPTEIIFTPEDRAAGAPEKELRTADR
                     DGRAPDERWHIRKDGSRFYVSGVMVALGRGRGYAKIARDLTVQRQKQEELQRGWEALE
                     QRIQERTAELASANSAMREEMRERRRVERERVELLRRIVTTQEDERRRISRELHDQLG
                     QSLTALRLKLEGLREEAGARAKLKARIGELVEIAQRLDSDVDFLAWELRPSALDDLGL
                     IVALSNYAQEWARHFGVAVNFHSFGLGDERLSPLVEINLYRIAQEALNNVAKHAGATS
                     VDILLERRDDHAVLIMEDDGRGFDPFRVETDGVRRGMGLIGIRERAALVGGTVEIESA
                     PGKGTTVFVRTPVKFEPAGLLAEGSR"
BASE COUNT          734 a         1741 c         1854 g          929 t
ORIGIN      
        1 ccttactctt aagcggcgaa ggcgcgctcg cccacgccga ggtattgctg aagcacgcgg
       61 ccgaggtggt cgaggctcgg cggcttcact aagtactcgt cgcagcccgc ctcgcgcgcc
      121 agcgcgagga acgacggctc agcgtggccg gagacgaaga cgatggggac gttgcgcgtc
      181 tttcgtatcc gccgggccgc ggtgaagccg tcgaggcgcg gcaggctccc gtccatgagg
      241 atgaggtcgg ggccagcgct ctcggcgagc cggacggcct cctcgccgtc ggccgcctca
      301 atgacggcgc agccgcgcat ccccagcatg atgctgaaga gcgtgcgcgt gtcgtcgtcg
      361 tcgtcagcga cgaggacgag cggggtgcgg ccgtctggcg gcgcgccttg taaatcattt
      421 gccatagtag ccatgagcct attagagccg cggtaagggc tggtcagagg agcccattgc
      481 attcaccgct cagtgggtgg ataaaacctt cgggggaaaa aaacggggcg agacttgaac
      541 catcccggcc cctcgcgtgc gactgtctgt aacaatccca agttcgcacg cattttctca
      601 cgaaacgcgg ggccgggata tcgggaaggt gcgaagcgcg gttagggatt tcccctaccc
      661 gccgggaggt ttctttgtcg gagcgcgcgg ccgcgtaccg acgacacggg ccgcccgcgt
      721 ttattttggg agctgcgttt ttcgcacgtg gagcgggtct gggcaactaa cccgaccccc
      781 cggatgaggg gggactgggt tgaaaccggc ccgctttttc gtgctcgtat tgccctgaat
      841 tcttctctct gtgcagtgtt aacacggagg ggttgtgaga tcaggtcgcg ggtcgtgagc
      901 gaggcgcttc aggtgttttg gagccagccc tgaaggattg cgtagcggac gatgtctatg
      961 cgcgagcgca tcccgagctt gcgcatggcg ttggccttgt gggcttcgac ggtcttgacg
     1021 ctcaaatcca gccgcgcggc aatctccttg ttgctgtaac cccacgcaat catccgcagg
     1081 acttcgcgct cgcgctcgct cggctcgttc tgaggcacgg cggccttgct ggccgacttc
     1141 gccacgtagc tgccgacgac cttgcccgtg acggccgggt cgaggaaggt ctggcccgag
     1201 gcgacggcgc gtatggccgt taggagcacc gccgaggcgc tctgcttgag gacgtagccg
     1261 gagacgccgg ccttgaggag ttgttgcagg tagccgtcgt cggcgtggcg cgtgagcgtg
     1321 atgattttgg cgtcggggca gcaccgtatg atgagctcgg ccgcctgtag gccgttcatc
     1381 tccggcatgg acacgtccag cacggccacg tccggcagaa gctccgtcac ctgccgcacg
     1441 gccgtgcgcc cgtccgaggc ctcgccgacg cactccatgt cgggctgcgc ctcgacgagc
     1501 atcctgagcc cctcgcggag caccgcgtgg tcgtcggcca aaaagactcg caacttgccc
     1561 acgctcacct gcttccttcg gcgagcagcc ccgccggctc gaatttgacg ggcgtgcgga
     1621 cgaagacggt cgtgcctttg ccgggcgcgc tctctatctc gaccgtaccg ccgacgagcg
     1681 ccgcgcgctc tcgtatgcct atcaggccca tgccgcgcct gacgccgtcg gtttcgaccc
     1741 ggaacgggtc gaaaccgcgc ccgtcgtcct ccatgatgag cacggcgtgg tcgtctcgcc
     1801 gctccaggag tatgtcaacg ctcgtcgccc cggcgtgctt cgcgacgttg ttgagggcct
     1861 cctgcgcgat gcggtagagg ttgatctcga cgagcggcga gaggcgctcg tcgccgaggc
     1921 cgaaggagtg gaagttgact gcgacgccga agtgtctggc ccactcctgc gcgtagttcg
     1981 agagggcgac gatgaggccg aggtcgtcga gcgccgaggg gcgcagctcc cacgcgagga
     2041 agtcaacgtc cgagtcgagc cgctgcgcta tctcaaccag ctcgccgatg cgcgccttga
     2101 gcttcgcgcg cgcgcccgcc tcctcgcgca gcccctccag cttgagccgc agcgccgtga
     2161 gcgactgccc tagctggtca tgcagctcgc gcgagatgcg gcggcgctcg tcctcctgcg
     2221 tggtgacgat gcggcggagg agctcgacgc gctcgcgctc gaccctccgg cgctcgcgca
     2281 tctcctcgcg catggcggag ttggccgagg ccaactccgc cgtccgctct tggatgcgct
     2341 gctcgagcgc ctcccagccc ctctgcaatt cctcctgctt ctgcctttgc acagtcaggt
     2401 cgcgagcgat cttggcgtag ccgcgccccc tgcccaaggc gaccattacg ccgctcacgt
     2461 agaagcgcga gccgtccttg cgtatgtgcc agcgctcgtc gggggcgcgc ccgtcccggt
     2521 cggccgtgcg cagctccttc tcgggggcgc cggcggcgcg gtcttcgggc gtgaagatga
     2581 tctcggtcgg gcgcccgacg gcctcgtcct tcgtgtagcc gaacatcttc tccgcgccgg
     2641 tgttccagtc cgtgtagcgc ccgcccgagt ccaacagcat gatggcgtag tcctcggccg
     2701 tctcgaccac gaggcgcagc cgctcctcgt tcgcgcgcag ctcctcttcg acccgcttgc
     2761 gctcggtgat gtccgacgcc atgccgatga cgaagcggcg gccgtcgcgc agggcgcccg
     2821 gcgaggaggc gctgaagctc cagtgccgca cctcgccgtc gcgcgtgcgg acggggaact
     2881 ccaggttgat cgtgcccttg tcgcccttga acaggccgtg gacgtgctcg cgcacgtcgt
     2941 cggccccctc gccgcaggcg cgcgtcagcc acgcgtggag cgtcggcacc tcctcggcgg
     3001 tgtagccggt cagctccgtc cacgcgcggc ttatctgcaa cacctcgccg tcctcggcgt
     3061 gcatgatgat gggtatcggc gcgtcctcga tagcgcgcct gaactgctcc tcgctctcgc
     3121 gcagggcctg ctgcgcgcgc ttgcgctcgg tgatgtcggt gaaggtgacg acgacgccgt
     3181 ctatcttgtt gtcggtcgtg cggtagggga gcatgcgggc gaggaagtgg cggccccccg
     3241 tggccccgac ctcgcgctcg accgtgtgga gtgtgcgcag cacgccgtcg gcgtcctcga
     3301 cgagcgaggg gtagtcgagc ttgtgcgtga cgtgcacgag cgggcggccc acgtcgccgg
     3361 ggatgatgtt gaagagctcc tgcgcgctcg gcgtgtagcg cttcagccgc atgtgccggt
     3421 cgaggaagag cgtggcgatc tgcgtcgagg ccagcaggtt atggaggtct gagttcgacc
     3481 gccctatctc ctcgatctta tcgcgcagct ccgcgttgag cgtcgccagc tcctcgttga
     3541 ccgactgcaa ctcctccttg cccgtctcca gctcctcgga ggccgagcgc agctcctcgt
     3601 tcatcgcctg caactcttcg ttgctggcct tcagctcctc tgtagaggtc tcgtactcct
     3661 cgatggtggc gcgcaactgt tcgcgcgcgc gctcgagctc ggcctccaac tgccggacga
     3721 tgggctcgag cccgggggca ggctgcgccg ccgcggcggg cggcgccgcg gcctgcgccc
     3781 cgccgccttc gccttcgggc gggggcgcgg cggccgactc gtcgaagagg acgagcttga
     3841 agccggaccg cgtctgcggc gagacgagcg ggcgcaccgt cacgcggacg aagtgctgcg
     3901 agccttcgat ctcgacaggc aggggggcgc tcgtcacctg tccgtgctgc cccgccgaga
     3961 gcaggagcga gtgcagctcg agctgcaggc cggggtgcac aaccttcagg aggttgcggg
     4021 tcggctcgcc gccggagagc cggaggtagc gcccggcgtg ctccgagagg tggacgatgt
     4081 cgtagtcgcc gttgacgagc acgctcgggg gggcgagggc ctcgatcatg cggtagtgca
     4141 tctcgccgta ggtggcgccc tcggcgagga cgggggcgcc tggcgcctgc ggcactgtcg
     4201 ccggccccgg cgcccaacgg ccgagggcgg gcgggggcgg ggggcgcctg aaactgtcgg
     4261 cgctctcctc gctgcgcttg aagatgcggt acttcttgtt gaccggcgtg aagaggtcgc
     4321 ccagcccatc ggccgactcc gacgagccga ggaagaggta gccctccggc ttcagggcga
     4381 agtggaatat ctcaagcacg cgctcctgca tgttgcggtt gatgtagatg aggaggttgc
     4441 ggcagctcac gaggctgagc ttcgagaagg gcgggtcgag cagtatgttg tgcggcgcga
     4501 agagaaccgt ctcgcgcagc tcgcgcttga cgcggtagta aggcccctcg cggacgaaga
     4561 agcgcttcag gcgctcgggc gcaacgtcgg ccgctatcgt gctcgggtag gcgccgttcc
     4621 gggccgccgc gagcgcgtcc tcgtctatgt cggtggcgaa gacctgtatg cccggcgggc
     4681 tggggagcgt gtcggcgcgc tcggagagca gcatggcgat ggagtatgcc tcctcgccgg
     4741 tggcgcaacc gctcacccag acgcgaatct ggtcgccggg gccgcgcccc tcgaacagct
     4801 tcgggatgac gtccgcctcc agccgggcga acgcctgcgg gtcgcggaag aagttcgtga
     4861 cgctgatgag caggtcgcgc agcagcccgt gcagctcctc cgggcggcga cggatgtgct
     4921 cgatgtaggc gcggaggtct tcggactccg tgacctgaag ccgccgctcg atgcggcgca
     4981 gaagggtcgt gcgcttgtag ttcgtgaagt cgtggcgggt gcgcgcgcgg agcagcacca
     5041 gcacctcgcg cagcgcctcc tcgtccacgc cgcgcggcgg ggcgtccggc ggcggcagcg
     5101 tgatgcgctc ggcgttctcc ttgagcgaga cgatcttcgc cgggatttcg gcgacgggca
     5161 ggatgaagtc aactaagccc gtctcggcgg cgcttcgcgg catcatcgcg tgctctgcct
     5221 cggacgggtc ttgcgcgatg gtgacgccgc cctcctcg
//
LOCUS       DASPKR010000373        14448 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_569978, whole genome shotgun sequence.
ACCESSION   DASPKR010000373 DASPKR010000000
VERSION     DASPKR010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 14448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14448)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14448
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569978"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VD968_10095"
     CDS             <1..316
                     /locus_tag="VD968_10095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14779.1"
                     /translation="IPQIVEELHEALGDGRESAPMLSEGREHGRQRWRQGYELKEVVR
                     ELTLLRVTLVEFIELYRGALPPRPPEELARSFHRINVFMDDEIYRTVEAYLDASKNPQ
                     SN"
     gene            474..1202
                     /locus_tag="VD968_10100"
     CDS             474..1202
                     /locus_tag="VD968_10100"
                     /inference="COORDINATES: protein motif:HMM:NF016269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding SYLF domain-containing protein"
                     /protein_id="HYE14780.1"
                     /translation="MRHLRKVTALALAAAAALCLAQAPASAQRRGAPAPKRAADASRH
                     SKEAAEVLRKIMSVPEKEIPRDLLESAEAVAVCPGVLKAAFIVGGRKGDCVISRRTLK
                     RQWSTPVFYNLTGGSVGAQVGGSKTDYVLLFMNEDALKGLMEDKFEIGGEAEATAGPV
                     GRTVGASTNPTLDAGILSYSRSKGAFIGAALKGVAITPDNDLNEAFYGRKANELVQAQ
                     DDTPVPSQVRAFPLALNRYSVRLP"
     gene            1300..2061
                     /locus_tag="VD968_10105"
     CDS             1300..2061
                     /locus_tag="VD968_10105"
                     /inference="COORDINATES: protein motif:HMM:NF016269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding SYLF domain-containing protein"
                     /protein_id="HYE14781.1"
                     /translation="MKLSSLGKILKAGALALFAAATLLTPALAQEERERRASKVVSTA
                     SPKQQKEASKKAEAASRVFEQIMGAPDRGIPRELLDKAEAVAVFPGVLKAGFVVGGRG
                     GSGLISRRVTGGWSAPAFFKLGGASVGLQIGASKTDFVLLFMNEDAVRGLLEDKFEMG
                     GEASAAAGPVGRAASATTNLTFDAGILSYSRSKGLFAGLELKGAVINPDNNLNEALYG
                     IKAKDILTGSNKVQMADLLPGVITFPNTLARYSIK"
     gene            complement(2268..3611)
                     /locus_tag="VD968_10110"
     CDS             complement(2268..3611)
                     /locus_tag="VD968_10110"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14782.1"
                     /translation="MGGLWPGVGKRPTLEGLKDSTAAEVLLRVGVLTGFIGSAGQVEG
                     AQASARNLIGESVSAFEALLETDKVAEALAELALCYWREGLYDEARAALQESLRRLAG
                     NDCEVKAVALLRSALIEKCAKRYNEALRLYVEAAPLFEEVGSDAVRGRFHNSFANLLA
                     LLADSEGCADYRDRAFVEYAAASYYFEQAGHGRFQACVENNLGFLFGTIGKYDEAHEH
                     LDRAQALFNSLNDSVRLAQLDETRARLFLAEGRAAEAERLAGASARALENGGEKPLLV
                     EALTTHGVALARLGSKEEARRALERALEVAELTGDSEGAGQAALTLIEEVGGRLTPRE
                     LSATFERAMRLLAASRHPGSKVRLLACSRKVLSGLGAQPRAPRWEGFSLDDAVHRFEA
                     RLVENAMRDAGGVVTRAARMLGVKRQSLSTMLHSRHSSLLPLRAAQPPARDVKQN"
     gene            4240..4863
                     /gene="lexA"
                     /locus_tag="VD968_10115"
     CDS             4240..4863
                     /gene="lexA"
                     /locus_tag="VD968_10115"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: protein motif:HMM:TIGR00498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HYE14783.1"
                     /translation="MQPRTQRQKEILDYIMRFIERHGYEPSYAQIARHFGVSSKATIA
                     KHIEALERRGLISRHREDGAFGLKVPHEEVDVDSTCEVPLLGRIAAGSPIDTTEEKES
                     ITVPRFLLGRVRPNRVYALRVTGDSMIDEHICDGDIALIENRTEARDGEIVVALVEGA
                     RATLKRLHRFGTEVELRPANSRHEPIRLHASKVTVQGIFRGLLRPAT"
     gene            5044..6129
                     /locus_tag="VD968_10120"
     CDS             5044..6129
                     /locus_tag="VD968_10120"
                     /inference="COORDINATES: protein motif:HMM:NF014068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI/YhbO family deglycase/protease"
                     /protein_id="HYE14784.1"
                     /translation="MAGETKRVAILIENHVEDSEFQIPYAALGEAGAEVKVLGSRVNE
                     KYTGKQMKVSVEADATTTDARAEDFDAVVIPGGMAPDKMRTNMKTVRFVQDAARQGKL
                     VAAVCHGPQVLIEGDLLRGKRATGFRAIRKDMENAGASYENAPLVEDGNILTSRRPAD
                     LPIFTAAILRRLGLSVKGEPLPDENELSAEWWHVAERWGGQSKDEIVDGINTAIRGER
                     YALTAFEKYAEKATDPEIKSLFEEIATSKRRHVQMLEGRLATLGGKEDMQAAGSGAWA
                     TLKGWLQGSDDVALLRRAMGDLQTGVVDAFNLTNQFTDPVTAALFDEIEVDLARHEQR
                     VADLFHARVAAGDSKPAKPTTGAAVSA"
     gene            complement(6188..6655)
                     /gene="mscL"
                     /locus_tag="VD968_10125"
     CDS             complement(6188..6655)
                     /gene="mscL"
                     /locus_tag="VD968_10125"
                     /inference="COORDINATES: protein motif:HMM:NF013869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HYE14785.1"
                     /translation="MAKDSGIVKEFKEFIARGNVIDLAVGVIIGAAFTRIVTSLVEGV
                     LMPPISLLTGRIDFASKFILLDSTKGVPQSLADAKDKGIPVIAYGQFINDVIAFLIVA
                     FVVFLIVKKVNRLWSAQAAASEAPTTKNCPFCLSAIPLKATRCPNCTSELQAA"
     gene            6950..8935
                     /locus_tag="VD968_10130"
     CDS             6950..8935
                     /locus_tag="VD968_10130"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HYE14786.1"
                     /translation="MRPTSPRKIFRLAAPAAALALALCTLFAGSALRGAHAAASSKAE
                     KPGSKVAADLLEKVQKGAGRVRVIVQPSGSWAGELDSELNGRGASVKEKFDNFASRVV
                     EMSAEDVLALAERDDVEYLAPDREVKLLGHLTLTTGADAAVAASGGATKLNGAGVGIV
                     VMDSGVEASHMAFADASGKSRVVFSKDFTGQGRTDDPYGHGTHVASIAAGGAQVSAGA
                     YTGLAPSAKIINLRVLDSKGLGTTSTVLRGLDWVLANRANATYNIKVVNLSLGTPAVD
                     SYRLDPLCQAARRLVDAGLVVVAAAGNEGKDGSGNKLYGQIHSPGNDPSVITVGAANT
                     FGTDPRSDDGVTSFSSRGPTRSSWVGADGVRRYDNLVKPDLVAPGNKIIAAQSPNNYL
                     VRTNPELDAGVSHNANRRYMYMSGTSMATPAVAGAAALLKQANPSLTPNLVKMILMYT
                     AQPLAGFNTLEQGAGQLNVEGAVRLARLIRADVGSGLPVGAPLLCGTCAPPSAQTVIA
                     GHHFNWGRGVVMGSTFATGANLVLKYQAVYDLGVILSDGVILSDGVILSDGVILSDGV
                     ILSDSLFTSDGLSLASGSLFCPTGRLLSDGVILSDGVILSDGGQVISDGVILSDGVIL
                     SDIRAQAADALLNGERTSHMLPVADTTSGAKNGWARE"
     gene            complement(9023..10027)
                     /locus_tag="VD968_10135"
     CDS             complement(9023..10027)
                     /locus_tag="VD968_10135"
                     /inference="COORDINATES: protein motif:HMM:NF019844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0070064 - proline-rich region binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HYE14787.1"
                     /translation="MPHNFRAPRLALAVLVLLTCIPSPAPASAAQADGERITTATNVR
                     LRNEPDTTGTDELGRLPLGVVVKVLERSDGKQKVGEREDYWYLVSAPDGTKGWVFGAL
                     TSPFAPARREEIYRKLASDRLANSSATFAELVDLVRFAERAAKEVRQREALADIELAR
                     VHALARSLASIGFEDLQKEPFQTWAKEREQEIVYSEPAGQWYVNSDLYWSLQQKYKDL
                     PAGELAAWSGAENPLPGECEGYLPCYLAAELMTKGKYLKLYPRGPHAREAFDSVAELL
                     EAVAEDLKQPQPVYDVPREDRKDFQAAVAELRALITSVTHPKRDRALAQLDAIARRFR
                     "
     gene            complement(10055..10849)
                     /locus_tag="VD968_10140"
     CDS             complement(10055..10849)
                     /locus_tag="VD968_10140"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14788.1"
                     /translation="MNRVKASAAFAAAVALTACLSCFSAQAAAQPGQKSQPAQPQGDK
                     RPPKKKLQAGSNFARYAGRDASNRLIAGGATRDIKDEAERQHQLGTESYEAGKYEQAV
                     AAFRRVAELKPSNAAAHYNLGVAYEAAGRGDEAVASYQKAISLTKTKELLAVAHYNTG
                     NVHAAAGRTEEAIAAYRKVIELLPKEAVAHYNLGLAHAAAGETAEAVAAFREAVRLKP
                     DYAEARYNLGVAYVEGGDRAAARAEAEELRKLNRTELAERLEALSK"
     gene            complement(10890..12953)
                     /locus_tag="VD968_10145"
     CDS             complement(10890..12953)
                     /locus_tag="VD968_10145"
                     /inference="COORDINATES: protein motif:HMM:NF017076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HYE14789.1"
                     /translation="MSARRSSFVSRLLRRRYWLLAAALTLLVWAGLAAAMAPSREAGG
                     GYERYPYGLTTQLENRALDLLFQLRDARRPEARARAQAEPITIIEVDEQSIRASQVRL
                     QRWPREWYARLVERAREGGAKVVGLDIYLSEKGGDYELKEDGEETAADAPVDKDEMAD
                     RALADAIYETENLVLAEKLEAGGTPAITPLEMFSEGATAVAFADLPHDGDNAVRSAML
                     VRAGADGGEPKFSFPAALAQLYTGEQLLPDTEHSFRLGGRVLPLRTDQTLQIDYRGRA
                     GAFRRVPAADILFKEGARPPDELFRDRIVIIGATNNDAPDLFYTPFYEPTALARLFDS
                     SLPVIPARMPGVEVHANTVATILFGRDITRPAYLWQIAFVLAALVLAALPVLLLRAIF
                     GFVGVAAVSFALLAVSAWAFDARAVVLPLASGWLGVGVFAPLGFALRYAHERSVREEK
                     EQERAQIMDIFSRCVSQEVAEELWRKRDQVALGGETRVVTVAFTDIRNFTTLTESARS
                     SKEVFAWLNDYFSRMHEVVCRYGGHINKFIGDGLMIVFGAPVNRGEREEARAAVLCGI
                     RMLEEVSALNREWEGTGRPHIAIGVGIHTGEATCGVVGAPGRLEYTVIGDTVNLAARL
                     ESTTKDAGVSLLVSRATAERLGEGYETEPLGDVKVKGKTESTSVFTVRPLETTKELPA
                     AVVAR"
     gene            complement(13296..13371)
                     /locus_tag="VD968_10150"
     tRNA            complement(13296..13371)
                     /locus_tag="VD968_10150"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13336..13338),aa:Thr,seq:cgt)
     gene            13451..14065
                     /locus_tag="VD968_10155"
     CDS             13451..14065
                     /locus_tag="VD968_10155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14790.1"
                     /translation="MPKDRAEVQDQYKIQGGFLNEYEFEQSKGEMGEQPGEPAQPDEG
                     QQVEGLHGAAEPNAPQNVAERIRQVEEAARETLERRRAKLKAKSAKKEERALAVRGGG
                     AGKVSAKKAVKKAGKKAAKKPAKKAAKPAAKKGAAKKAAAKKAGAKKRGAAKSGAGRK
                     PSGGAKKAGAGKAAAKKGAAKKGSKKGGGAGSKGAAGKGRGGRK"
     gene            14113..14271
                     /locus_tag="VD968_10160"
     CDS             14113..14271
                     /locus_tag="VD968_10160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14791.1"
                     /translation="MTESTGRQEEPAGTARGEEDEGLQAEEESAAAMDADVPQPPGAS
                     ETTEGQPS"
BASE COUNT         2572 a         4768 c         4848 g         2260 t
ORIGIN      
        1 catcccgcag atcgtcgagg agctgcacga agcgctcggc gacgggcgcg aaagcgcgcc
       61 gatgctctcg gaggggcgcg agcacggccg ccagcgctgg cggcagggct acgagctgaa
      121 ggaggtcgtg cgggagctga ccctcctgcg cgtcacgctc gtcgagttca tcgagctcta
      181 ccgcggggcg ctccccccgc gcccgcccga ggagctggcg cgctccttcc accgcatcaa
      241 cgtcttcatg gacgacgaaa tctaccgcac cgtcgaagcc tacctcgacg cctcaaagaa
      301 cccgcagtcg aactgacgtc ggagacgagg aaccgggaac gctgaacgat gaacgaaaga
      361 ccttttgtat tcggttcgtt gttcagcgtt catagttcct cgttttccca gacctcgtat
      421 acactctccc cgagcatcga acggagatga acgcgtcgag gagggaagtg tgtatgagac
      481 atttgcggaa agtaacggcg ctcgcgctcg ccgcggccgc cgccctgtgc ctggcgcagg
      541 ctccggcgtc ggcgcagagg cgcggcgcgc cggccccaaa gcgcgcggcc gacgcctcgc
      601 gccactcgaa ggaggcggcc gaagtcctgc gcaagatcat gtcggtgccc gagaaggaga
      661 ttccgcgcga cctgcttgag agcgctgagg ccgtcgccgt ctgccccggc gtgctcaagg
      721 cggccttcat cgtcggcgga cgcaagggcg actgcgtcat cagccgccgc acactgaagc
      781 ggcagtggag cacgcccgtc ttctacaacc tgaccggcgg gagcgtcggc gcgcaggtcg
      841 gcggctcgaa gaccgactac gttctgctgt tcatgaacga ggatgcgctg aagggcctga
      901 tggaggacaa gttcgagatc ggcggcgagg ccgaggcgac cgccggcccc gtcggccgca
      961 ccgtcggcgc cagcaccaac ccgacgctcg acgcgggcat cctctcctac tcgcgcagca
     1021 agggcgcctt catcggcgcc gccctcaagg gcgttgccat cacgcccgac aacgacctga
     1081 acgaagcctt ctacggcagg aaggcgaacg agctcgtgca ggcccaggac gacacgcccg
     1141 tcccttcgca ggtgcgcgcc ttcccgctcg cgctcaaccg ctactctgtg cggctcccct
     1201 gacggccgga aagacgctgg atgctagatg tcagatgtcg gttaaagaca ggctctagca
     1261 tccgacatct aacatctgac atcttttaag gagattcgca tgaagctttc gtccctcgga
     1321 aaaattctca aggccggcgc cctcgcgctc ttcgcggcgg cgacgcttct gacgcccgcg
     1381 ctcgcgcagg aggagaggga gcggcgcgcg tcgaaggtag tctcgaccgc cagcccgaag
     1441 cagcagaagg aggcgtcgaa gaaggccgag gcggcctcgc gcgtcttcga gcagataatg
     1501 ggcgcgcccg accgcggcat cccgcgcgag cttctggaca aggcggaggc agtcgccgtc
     1561 ttccccggcg tgctcaaggc agggttcgtc gtgggcggcc gcggcggcag cggcctcatc
     1621 tcccggcgcg tcacgggcgg ctggagcgcg cccgccttct tcaagctggg cggcgccagc
     1681 gtcggccttc agataggggc gtctaagacc gacttcgtgc tgctgttcat gaacgaggac
     1741 gccgtgcgcg gcctgctaga agacaagttc gagatggggg gcgaggcgag cgccgccgcc
     1801 ggcccagtcg gccgcgccgc cagcgccacc actaacctga ccttcgacgc gggcatcctc
     1861 tcctactcgc gcagcaaggg cctcttcgcc gggctggaac tcaaaggcgc cgtcatcaac
     1921 ccggacaaca atttgaacga ggcgctttac ggcatcaagg ccaaagacat actcaccggc
     1981 agcaacaagg tgcagatggc agaccttctg cccggcgtca taaccttccc caacacactc
     2041 gcgcgctact ctattaagta acgccagagc cgtcgcgata gagaaagggg acggggtgag
     2101 gggcgcgaca gctccctcac cccttccacc ttccacgtaa atagcgaggc cgccgcgcgc
     2161 ccacccacgc ttcggcggcc ccgcggcgcg cccggttcgc ctccggcggg cgcgccagcc
     2221 gtgagaggcg ccgcgcacgc gagggcatac gcgcgcgcgc ctcggtctca attctgcttc
     2281 acgtctctcg cgggcggctg cgccgcgcgc agcggcagta ggctgctgtg gcgcgagtgg
     2341 agcatagtgg agaggctctg ccgcttgacg ccgagcatgc gggcggcccg cgtcacgacc
     2401 ccgccggcgt ccctcatggc attctcgacg agcctcgcct cgaatcggtg caccgcgtcg
     2461 tcgagcgaga acccctccca cctcggcgcc cgcggctgcg cccccaaccc ggaaagaacc
     2521 tttcgcgagc acgccagcag gcgcactttg ctgccggggt ggcgcgaggc cgcgagcagt
     2581 ctcatagcgc gctcgaacgt ggcgctcaac tcccgcggcg tgagccgccc tcccacctcc
     2641 tctatcagcg tcagcgccgc ctgcccggcc ccctcgctgt cccccgtcag ttcagcgacc
     2701 tccaacgccc gctcaagagc acggcgggcc tcctccttac tccccaaacg cgccagcgcc
     2761 accccgtgcg tcgtcagggc ctccaccagc aggggcttct cgcccccgtt ctccagcgcg
     2821 cgcgccgacg ccccggcgag ccgctccgcc tccgccgcgc gcccctcggc cagaaacagc
     2881 cgcgcccgcg tctcgtcaag ctgcgcgagg cggacgctat cgttgaggga gttaaagagc
     2941 gcctgcgcgc ggtcgaggtg ctcgtgcgcc tcgtcgtact tgccgatggt gccgaacaga
     3001 aaccccagat tgttctcgac gcaggcctga aagcggccgt ggcccgcctg ctcgaagtag
     3061 tagctggcgg cggcgtactc gacgaaggcg cggtctctgt agtccgcaca cccttccgaa
     3121 tctgctaaga gcgccagcag gtttgcgaag ctgttatgga accgtcccct gaccgcgtcg
     3181 ctgccgacct cctcgaatag cggcgccgcc tcgacgtaga gcctgagcgc ttcgttatac
     3241 cgcttcgcgc atttttcgat aagcgcgctg cggagcaacg caaccgcttt cacttcgcag
     3301 tcgttgccgg cgaggcggcg tagagactct tgcagcgccg cgcgcgcctc gtcatacaag
     3361 ccctcccgcc agtagcagag ggcgagctcg gccagcgcct cggcgacctt gtccgtctct
     3421 aacagcgcct cgaatgccga gacgctctcg ccgattaaat tcctggccga cgcctgagcg
     3481 ccttcgacct gcccggcgct gccgatgaac cccgtcaaca cgcccacgcg cagcagcacc
     3541 tcggcagcgg tcgagtcctt aagcccctcc aacgtcggcc tcttgccgac gccgggccac
     3601 agcccgccca tgctttctcg cgccgcctcg aagtcgccgg tctcgcctat ccccctggct
     3661 aaccggcacc gcagccgcgc ctcctcgtcg cgactgagcc cggggtcagc cagccgtctg
     3721 attaacgagt cagtagaagc catgaaggtt taacgcctcc tgtccgaacg gctaacagta
     3781 gtaggccgcg gcgcacttgg cgcggcgtgg tgtcgggtgg gcgtgagctt actcgctgtc
     3841 gggcgtggtg gcgccgttcc agcctagttc ggcctgaccg atctcgtgtt gttcgtgctg
     3901 ccgtgagccc tctgtcactg gcggctgagt atcagtgtgt ctctggaggc gttttgtgcc
     3961 gcgcaggggt ggccgggata aacagggagg ccgcgcccca acattgcggg gcgaagataa
     4021 acccccgccg caagacaaat caataggttt atttatgaaa tttttagggc gtgagtggtt
     4081 tttattggag ttagctgggg ggtgcaactt ttaaggcagc attcggccgg ccgcgggcgc
     4141 cctccgcgag ctatttcctt gacgctcaac gacgagcgaa cataaaatcg cgcgagctta
     4201 aacggggcgg cctcttcggc acgggagcac tcgaaactta tgcagccacg cacgcagcgc
     4261 cagaaagaga ttctcgacta catcatgcgc ttcatcgagc gccacggcta cgagccgtcc
     4321 tacgctcaga tagcgcgcca cttcggggtc tcctcgaagg cgaccatcgc gaagcacatc
     4381 gaggcgctag agcgccgcgg cctcatctcg cgccaccgcg aggacggcgc cttcggcctc
     4441 aaggtgccgc acgaggaggt tgacgttgac tcgacgtgcg aggtgcctct gctgggccgc
     4501 atcgccgcgg gctcgcccat agacacgacc gaggagaagg agagcataac ggtgccgcgc
     4561 ttcctcctcg ggcgcgtgcg cccgaaccgc gtctatgcgc tgcgcgttac gggcgactcg
     4621 atgattgacg agcacatctg cgacggcgac atagcgctca tagagaacag gacggaggcg
     4681 cgcgacggcg agatcgtcgt cgccttagtc gagggcgccc gcgccaccct caagcgcctg
     4741 caccgcttcg gcacggaggt cgagctcagg cccgccaact cgcggcacga gccgatacgc
     4801 ctgcacgcct cgaaggtgac ggtgcagggc atattccgcg ggctgctgag gccggcgacc
     4861 tgagattcgc cccggcgcga aaagtagcgt aaacgaacag aatcgctcac gccctgtacg
     4921 ggtttgtggg cgattttttc gtggcgcgtg aggttttaca tgaggttacc gctggcatgg
     4981 cccttgccgc tttcggcggg agagacaaac ccgagaacgg aagccgaagg agtcgaaaac
     5041 acaatggccg gagagacgaa gagggtagcc atactcatcg agaatcacgt agaggacagc
     5101 gagttccaga taccttacgc ggcgctcggc gaggccggcg cggaggtcaa ggtgctgggc
     5161 tcgcgcgtca acgagaagta cacgggcaag cagatgaagg tgtcagtcga ggccgacgcc
     5221 acgaccaccg acgcgcgcgc cgaggacttc gacgccgtcg taatccccgg cggcatggcg
     5281 cccgacaaga tgcgcacgaa catgaagacg gttcgcttcg tgcaggacgc cgcccgccag
     5341 ggcaagctcg tcgcggccgt ctgtcacggg ccgcaggtgc tcatcgaggg cgacctgctg
     5401 cggggcaagc gcgctacggg cttccgcgcc atacgcaagg acatggagaa cgccggcgcg
     5461 tcttacgaga acgcgccgct cgtcgaggac gggaacatac ttacctcgcg gcggcccgca
     5521 gacctgccga tattcacggc cgcgatactc agacggctgg gcctttcggt gaagggcgag
     5581 ccgctgcccg acgagaacga gctttcggcc gagtggtggc acgtggccga gcgctggggc
     5641 gggcagtcga aggacgagat agttgacggc atcaacacgg cgatacgcgg cgagcgctac
     5701 gcgctgactg ccttcgagaa gtacgccgag aaagcgaccg acccagagat caagtcgctc
     5761 ttcgaggaga tagcgacgag caagcgccgc cacgtgcaga tgctcgaagg gcgtctggct
     5821 acgctcggcg gcaaggagga catgcaggcc gcggggagcg gcgcgtgggc gacgctcaag
     5881 ggctggttgc aggggagcga cgacgtggcg ctgctgcgcc gcgcgatggg cgacttgcag
     5941 acaggcgtcg ttgacgcctt caacctgact aaccagttca cagaccccgt gacggccgcg
     6001 ctcttcgacg agatagaagt tgacctcgca cgccatgagc agcgcgtggc agacctcttc
     6061 cacgcccgcg tcgcggccgg cgactccaag ccggcgaagc ccacgaccgg cgccgccgtc
     6121 tcagcctgaa aggatagagg ccaggggcta gaggccggtc aggaatcatc tcctgaccgg
     6181 cctctcctta tgctgcctga agctcgctgg tgcagttcgg gcagcgcgtg gccttgagtg
     6241 ggatggcgga gaggcagaag gggcagttct tcgtcgtggg cgcttctgac gcggccgcct
     6301 gagcgctcca gagccggttg accttcttga cgatgaggaa gacgacgaag gcgacgatga
     6361 ggaaggctat cacgtcgttg atgaactggc cgtaggcgat gacgggtatg cctttgtcct
     6421 tcgcgtcggc gagcgactgc ggcactccct tcgtcgagtc taagaggatg aacttgctcg
     6481 cgaagtctat cctgccggtc aggaggctta tcggcggcat cagcacgccc tctacgagcg
     6541 aggtcactat ccgcgtgaac gccgcgccga tgatgacgcc cacggccaaa tcaatcacgt
     6601 tgccgcgcgc gatgaactcc ttgaattcct tcactatccc ggaatcttta gccatgcctc
     6661 ggcgaccctc cgtctcgtcg gactgttcac agcggcaacg cttttatttc aaatcggtca
     6721 actcgtcaag ctgaccgagc gcctctctca gactgatccg cccgcgcccg caaaacctcc
     6781 cacgccttgc cggaaacccc cgaaaaccct gaaaaatcga gcgcccgcgc gacggcacgc
     6841 ccgttgccaa accccccggc ggaaggcccg aagggcgagc cccgcagaag acatctcact
     6901 gacgcctcgg gcctagggcc gacacaggca cctcgcaaga gcgaagaaaa tgagaccgac
     6961 atccccccgt aaaatcttcc gcctcgccgc gccggccgcg gcgctcgcgc tcgcgttgtg
     7021 cacgctgttc gcgggcagcg cgctccgggg tgcgcacgcc gccgcgagta gtaaggccga
     7081 gaagcccggc agcaaagtcg cggcagacct cctcgaaaaa gtccagaagg gcgccgggcg
     7141 cgtgcgcgtc atcgtgcagc cctcgggctc gtgggcgggc gaactagact cggaactgaa
     7201 tggcaggggc gcgagcgtca aggagaaatt cgacaacttc gcttcgcgcg tcgtcgagat
     7261 gagcgccgag gacgtgctcg ccctcgcgga gcgcgatgac gtggagtacc tcgcgcccga
     7321 ccgcgaagta aaactcctcg gccacctgac gctcaccacc ggcgccgacg cggccgtcgc
     7381 ggcctcgggc ggcgcgacga agctcaacgg cgcgggcgtc ggcatcgtcg tgatggactc
     7441 gggcgttgag gcctcgcaca tggccttcgc ggacgcctcg ggcaagtcgc gcgtcgtttt
     7501 cagtaaagac ttcacgggtc agggccgcac cgacgaccct tacggccacg gcacgcacgt
     7561 cgcctcgata gcggccggcg gcgctcaggt ctctgcgggc gcctacacgg gcctcgcgcc
     7621 cagcgcgaag ataattaacc tgagggtgct cgactcgaag ggcctgggca cgacctcgac
     7681 cgtcctgcgc gggctcgact gggttctggc gaaccgcgct aacgcgacct acaacatcaa
     7741 ggtcgtaaac ctcagcctcg gcacgccggc cgttgactca taccgcctcg accccctttg
     7801 ccaggccgcg cgcaggctgg ttgacgccgg cctcgtcgtc gtcgccgccg ccggcaacga
     7861 gggcaaggac gggagcggca acaagctcta cgggcagatt cactcgcccg gcaacgaccc
     7921 gtcggtcatc acggtcggcg ccgcgaacac cttcggcaca gacccgcgct cggacgacgg
     7981 cgtgacctcc ttcagctcgc gcggcccgac gcgcagctcc tgggtcggcg cagacggcgt
     8041 gcgccgctac gacaacctcg tcaagcccga cctcgtcgcg cccggcaaca agatcatcgc
     8101 cgcccaatcg cccaacaatt acctcgtgcg cacgaacccc gagctcgacg cgggcgtctc
     8161 gcataacgcg aaccgcaggt acatgtacat gagcgggact tcgatggcga ccccggccgt
     8221 ggcgggcgcc gcggccctgc tcaagcaggc caacccgtct ctcaccccca acctcgtcaa
     8281 gatgattctg atgtacacgg cgcagccgct cgccggcttc aacacgcttg agcagggcgc
     8341 ggggcaactg aacgtcgagg gcgcagtccg cctcgcgcgc ctgatacgcg cggacgtggg
     8401 ctcgggcctc ccggtcgggg cgccgctcct gtgcgggact tgcgcgccgc cctcggcgca
     8461 gaccgtcata gcgggccacc atttcaactg gggccgcggc gtcgtaatgg ggagcacgtt
     8521 cgcgacgggc gcgaacctcg tgctcaagta ccaggcagtc tatgacctcg gcgtgattct
     8581 ctccgacggc gtaatactct cggacggggt gatactctcc gacggcgtca tcctgtcgga
     8641 cggcgtgata ctgtccgaca gcctgttcac gagcgacggc ctctcactcg cctccggctc
     8701 gctcttctgc ccgacgggga ggctgctctc cgacggcgtg attctctccg acggggtgat
     8761 tctctccgac ggcgggcagg tcataagtga cggcgtgatt ctttccgacg gcgtaatact
     8821 ctccgacata agggcgcagg ccgccgacgc gctcctgaac ggggagagga cttcgcacat
     8881 gctgcccgtc gccgacacga cgagcggcgc gaagaacggc tgggccagag agtaggcggg
     8941 aaaggaggga gcagctaagg aaatgggttg acgacagcgc cgctgtcgtc aacccatttc
     9001 gctttcccgg ccactttggg ccctagcgga agcggcgcgc gatggcgtcg agctgcgcga
     9061 gcgcgcggtc gcgcttcggg tgcgtgacgg acgtgatgag cgcgcgcagc tccgcgaccg
     9121 ccgcctggaa gtctttgcgg tcttcgcgcg gcacgtcata gacgggctgc ggctgcttta
     9181 agtcctccgc aacggcttcg aggagctcgg cgaccgagtc gaaagcctcg cgcgcgtgcg
     9241 gcccgcgcgg gtagagtttc aggtacttcc ccttcgtcat aagctccgcg gcgaggtagc
     9301 agggcaggta gccttcgcac tcgccgggca gagggttctc ggcgcccgac cacgcggcga
     9361 gctcgcccgc gggcaagtcc ttgtactttt gctggaggct ccagtagagg tctgagttga
     9421 cgtaccactg gccggcgggc tcgctgtaaa cgatctcctg ctcgcgctcc ttcgcccacg
     9481 tctggaaggg ctccttctgc aagtcctcga agcctatgct ggcgagcgag cgcgcgagcg
     9541 cgtgcacgcg cgcaagctca atgtcggcca gagcctccct ttgcctgacc tctttcgcgg
     9601 cgcgctcggc gaacctgacg aggtcaacga gctcggcgaa ggtggcggac gagtttgcga
     9661 ggcggtcgga ggcgagctta cggtaaatct cttctcggcg cgcgggggcg aagggggacg
     9721 tgagcgcgcc gaagacccag cccttcgtgc cgtcgggcgc ggagacgaga taccagtagt
     9781 cctcacgctc gcccaccttc tgcttgccgt ccgagcgctc taagactttg acgacgacgc
     9841 cgagcggcag cctgccaagc tcgtccgttc cggtcgtgtc gggctcgtta cgcaggcgca
     9901 cgttagtggc agtcgttatg cgctcgccgt ccgcctgagc ggctgaagcc ggggccggag
     9961 aggggatgca agtgagtagc actagaacgg cgagggcgag ccggggcgcg cgaaagttgt
    10021 gtggcaagtt tttagactcc tacggcattc actgttattt gctgagcgct tcgagccgtt
    10081 cggccagctc cgttctattc agcttgcgaa gctcctcggc ttcggcacgc gcggcggcgc
    10141 ggtcaccccc ctcgacgtac gcgacgccga ggttgtagcg cgcctcggcg tagtcgggct
    10201 tgaggcggac ggcctcgcgg aaggcggcga cggcctcggc ggtctcgccg gccgcggcgt
    10261 gcgcgaggcc gaggttgtag tgcgcgaccg cctctttggg cagaagctcg atgaccttcc
    10321 tgtaggccgc tatggcctct tcggttcgcc cggctgcggc gtggacgttc cccgtgttgt
    10381 agtgcgcgac ggcgagtagc tccttcgtct tcgtcaaact gatggccttc tggtaagagg
    10441 ctacggcctc gtcgccgcgg cccgcggcct cgtatgcgac gccgaggttg tagtgcgccg
    10501 cggcgttcga gggcttcagc tcggcgacgc gacggaaggc ggcgacggcc tgctcgtact
    10561 tgccggcctc gtagctctct gtgcctagct ggtgctgccg ctcggcctcg tccttgatgt
    10621 cgcgcgtggc gccgcccgcg atgaggcggt tcgatgcgtc gcggcccgcg taccgcgcga
    10681 agttcgagcc ggcctggagc ttcttcttcg gcgggcgctt gtcgccctgc ggctgcgcgg
    10741 gctgcgactt ctgaccgggc tgcgccgcgg cctgcgcgga gaagcacgaa aggcaggccg
    10801 tcagggcgac ggctgcggcg aaggccgcgc tcgctttgac tcggttcatg gcagacccct
    10861 tagaagttta agaacgtgca gccctcgcgt caccgcgcta cgacggcggc gggcagctct
    10921 ttggttgtct ccagcgggcg gacggtgaag acggaggtgc tctcggtctt gcccttgacc
    10981 ttcacgtcgc cgagcggctc ggtctcgtag ccttcgccga gccgctcggc cgtcgcgcgg
    11041 ctcacgagca gcgagacgcc cgcgtccttc gtcgttgatt cgaggcgcgc ggccaggttc
    11101 accgtgtcgc ctatgaccgt gtattcgagc cggccgggcg cccccacgac gccgcacgta
    11161 gcctcgcccg tgtgtatgcc gacgccgatg gcaatgtgcg gccggcccgt cccctcccac
    11221 tcgcggttga gcgccgagac ctcttcgagc atcctgatgc cgcacaggac tgcggcccgc
    11281 gcctcctcgc gctcgccgcg gttgacgggc gcgccgaaga cgatcatcag gccgtcgcct
    11341 atgaacttgt ttatgtggcc gccgtagcgg cagacgactt catgcatgcg gctgaagtag
    11401 tcgttgagcc aggcgaagac ctccttcgac gaacgcgccg actcggtgag cgtcgtgaag
    11461 ttgcgtatgt ctgtgaaggc gaccgtgact acgcgcgtct cgccgccgag cgcgacctgg
    11521 tcgcgcttcc gccagagctc ctcggccacc tcctgcgaga cgcagcgcga aaagatgtcc
    11581 ataatctgcg cgcgctcctg ctccttctcc tcgcgaacgg agcgctcgtg cgcgtagcgc
    11641 agcgcgaagc cgagcggcgc gaacacgccg acgcccagcc agccgctcgc gagcggcagg
    11701 acgaccgcgc gcgcgtcgaa cgcccaggcc gagacggcga ggagcgcgaa cgagacggcc
    11761 gcgacgccca cgaagccgaa gatcgcgcgc agcaggagga cgggcagcgc cgcgagcacg
    11821 agggcggcga gcacgaaagc gatctgccag aggtatgcgg ggcgcgtgat gtcgcggccg
    11881 aagaggatcg tggcgacggt gttggcgtga acctcgacgc cgggcatgcg cgcggggatg
    11941 accgggagcg acgaatcgaa gaggcgcgcc agagccgtgg gctcgtagaa gggcgtgtag
    12001 aagaggtcgg gcgcgtcgtt gttcgtggcg ccgatgatga ctatgcggtc gcggaaaagc
    12061 tcgtcggggg ggcgagcgcc ctctttgaag agtatgtcgg cggccgggac gcggcggaag
    12121 gcgcctgcgc gcccgcggta gtctatctgc aaggtctggt ctgtgcgcag cggcagcacg
    12181 cgcccgccga gccggaacga atgctcggtg tcgggcagga gctgctcccc cgtgtagagc
    12241 tgcgcgaggg cggcggggaa gctgaacttc ggctcgccgc cgtcggcccc cgcgcgcacg
    12301 agcatggctg aacgcacggc gttgtccccg tcgtgcggca ggtccgcgaa cgcgacggcc
    12361 gtcgcgccct cggagaacat ttcgagcggg gtgatggcgg gcgtgccgcc cgcttcgagc
    12421 ttctcggcga ggactaagtt ctccgtctcg taaattgcgt cggccagcgc gcggtcggcc
    12481 atctcgtctt tatcaaccgg ggcgtcggcg gcggtctcct cgccgtcctc ttttaactcg
    12541 tagtcgccgc ccttctcgct caggtatatg tcgagcccga cgaccttcgc gcctccctcg
    12601 cgcgcacgct cgacgagccg cgcgtaccac tcacgcggcc agcgctgcaa gcgcacttgc
    12661 gatgcgcgta tggactgttc gtcaacctcg atgatcgtga ttggctcggc ctgtgcgcgg
    12721 gcgcgggctt cggggcggcg ggcgtcgcgg agctggaaga gcaggtcgag ggcgcggttc
    12781 tcaagctgtg tggtcagccc gtaagggtat cgctcgtagc cgccgcccgc ctcgcgcgag
    12841 ggggccatcg cagccgccag gcccgcccag acgagcagcg ttagcgccgc ggccagcagc
    12901 cagtagcggc gtcgtaggag acgggagacg aaggaggaac gtcgggcaga catccggggc
    12961 gaacagcttc gcgggctctc gcggctcttt cagacgcggc gaattgtaaa gccgccccgc
    13021 cggccggtca acgcgctcgc gaagagaaac aatgtcgccg ccgcagaatc gtcagagaca
    13081 cgagcaagtt tcacagatca gcttaatggc gcacgattcc tcgggcctga aaaggattca
    13141 gtaagaggtc gctaagtgcc gcgtgttgtg cgcaaaacat catcggaagc aaaccatccg
    13201 gcagtttaat tacaagaaat ggctggtcga agattgaggc taaaaggaaa ttgccgtata
    13261 actgtgcttc agttatacgg caacaaaaaa aattgtggag ccaccttgga gactcgaact
    13321 ccagacctgt cgattacgaa tcgactgctc taccaactga gctaaggtgg ctcactacgt
    13381 aaacgaatat acgaacgcgg cgccgggcgt gtcaagcgcc gcccggttga agcgaggaag
    13441 aggaggggag atgccgaagg acagggccga agtacaggat cagtataaga ttcagggcgg
    13501 tttcctgaac gagtacgagt tcgagcagtc gaagggcgag atgggcgagc agccaggcga
    13561 gcccgcgcag cccgacgagg gccaacaggt cgaggggctg cacggcgcgg ccgagccgaa
    13621 cgcgccgcag aacgtggccg agcgcatacg gcaggtcgag gaggccgcgc gcgagactct
    13681 cgaacgtcgc cgcgcgaagc tgaaggccaa gagcgcgaag aaggaagaga gggctctggc
    13741 ggtgcgcgga ggtggcgcgg gcaaggtcag cgcgaagaag gctgtgaaga aggccggcaa
    13801 gaaggctgct aagaagcccg cgaaaaaggc cgcgaagcct gcggcgaaaa agggcgccgc
    13861 aaagaaagcc gccgcgaaga aagccggcgc gaagaagaga ggcgctgcga agtctggggc
    13921 cgggcgcaag ccttcgggcg gggcgaagaa ggcgggcgca gggaaggctg ccgcaaagaa
    13981 gggcgcagct aagaagggct ctaagaaggg cggcggcgcc ggctcgaagg gcgcggcggg
    14041 gaaggggcgc gggggaagga aatagtcgcg cgctcccgag ccaacagacc ggatcaacag
    14101 ggaggataga agatgacgga gagcacaggg agacaggaag agccggcggg cacggctcgt
    14161 ggcgaggagg acgaagggct tcaggccgag gaggagtcgg ccgcggcgat ggacgcggac
    14221 gtgccgcagc cgccgggcgc atcagaaacc accgaaggcc agccctcctg aaacaatcac
    14281 cgacgcgagg ccgtaatcag accgggacgg cggtcgcgag gcactctaaa gccttgcgcc
    14341 tccctcccgg tttcgcacgt cccgacggcc cgcacacgcc gggataacac tcataacgct
    14401 ctcccgcgtc taaaagaaga tgagaagaac gctgtcccga atctcgct
//
LOCUS       DASPKR010000374         7447 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_52699, whole genome shotgun sequence.
ACCESSION   DASPKR010000374 DASPKR010000000
VERSION     DASPKR010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7447)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7447
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52699"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..302)
                     /locus_tag="VD968_10165"
     CDS             complement(<1..302)
                     /locus_tag="VD968_10165"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYE14792.1"
                     /translation="MSTAEQGRQQSEIVRKHKEFLFPAVATYYQEPLALVRGEGQYVW
                     DDRGDRYLDCFGGVLTVSVGHANPRVNAAIIEQLNTISHTSTLYANRPQGDLAEKLA"
     gene            complement(354..932)
                     /locus_tag="VD968_10170"
     CDS             complement(354..932)
                     /locus_tag="VD968_10170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14793.1"
                     /translation="MIVNCPQCGAENAGAAVESACRECGKPLGEAVLAQKTEDIRKLT
                     DRMKGLAAPRKSFYTFNGFGTTLLDYRPAGDGTFEATRWVVALFFPVFPLVTYRIRPT
                     EEKRSYGRETYGFEVLERGDLSAGRVVRPYLLALLALAVPAVVFYYGKSIERAIGGLP
                     AVIIGLLSIVWCFYILFTRIKNEGKAYKQRSA"
     gene            complement(950..1792)
                     /locus_tag="VD968_10175"
     CDS             complement(950..1792)
                     /locus_tag="VD968_10175"
                     /inference="COORDINATES: protein motif:HMM:NF024498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HYE14794.1"
                     /translation="MRILLTVLFLTLAAAAPVRAAGVEWHRKFEAARELAKQTGKPML
                     IDFQADWCKPCKEMERSFWPRPEVVGLAQKFVCVQLNFDSTGSERARYRVDRIPAVIF
                     TDPWGNFLTAHFGYGPGKDALLTRVMQAVPGDYTPVADWMAALEKNKESAPALVQVGD
                     FYRRNGVFDLSTSYFKRALKTKEVEADAKARASVIIALGVNLSKQEEHGEARKMFERY
                     LKEFPDGQEADFALLGVITMQLRKNKLAEAEQTLARLKAEHPASERTRQAERQFEAAR
                     SQKR"
     gene            complement(1797..3275)
                     /locus_tag="VD968_10180"
     CDS             complement(1797..3275)
                     /locus_tag="VD968_10180"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYE14795.1"
                     /translation="METYRNFVNGKWVESVSGNRVDNVNPANTDDVLGTVRLSTREEA
                     ARAVEAASEAFRSWRSTPAPARGRIVARAARLLEDDKENLARILTREEGKTLAESRGE
                     IQRAVNVAEFVAGEARRMNGETIPSELPANFAYTVKQPHGVVACITPWNFPVAIPVWK
                     IAPALVAGNTVVFKPATVTPATAVRLVEIFSEAGLPPGALNLVLGSGSDAGDEIVNHR
                     AVRAISFTGSNGVGLKLYEQAARRGVKVQCEMGGKNPVIVLEDADLNLAVESTAQGAF
                     GSTGQRCTATSRAIVVDRVADNFIERIVARAEAIRVGDGMSPETEMGPIVDGGQFKSV
                     LHYMDVGREDGASLVTGGEPADGPGLRKGYFVKPTVFAGVTPDMRIAREEIFGPVLSV
                     LRVRDFDEAMQVANDSEYGLSSSIFTNDAARIFRFVDEIETGMTHINSPTTGGEAHVP
                     FGGIKSTGIGEREQGSTALDFYTELKVVYVDYTGRRREGNLY"
     gene            3446..4969
                     /locus_tag="VD968_10185"
     CDS             3446..4969
                     /locus_tag="VD968_10185"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYE14796.1"
                     /translation="MAPNNLRELLEARAAAAPDKVFILSESDGRALTYQGFDRLVDLT
                     ARMLASRGVGKGDVVSLLMPNSIEYVVAYFACFKLGAIAGPVNSLLKPEEITYVVGDS
                     EARAIMYGSQFEPAVRRVRGKIGSLKTAFKFDAAGRKNFPGHAGPLPEADLGREDEAI
                     IIYTSGTTGKPKGCLLTHANLIANARQISEWLGFTGEDRLLSVMPLFHMNAVSVTTMS
                     ALYAGGSTVVSPRFSASRFWQIVSDYGVTSFGSVATMLSMLLKTYPEGVPEGLDTSRL
                     RFAMCGSAPVPAEVLRRFEETFKCLVVEGYGLSESTCRSTFNPPDERRRPGSCGLPIG
                     NEMKVFDDDDRELPDGEPGEIVLRGENVFKGYFRNEEATRRAFRSGWFHTGDVGYRDR
                     DGFFYIIDRKSDMIIRGGENIYPREIDELLYKHPAVAEAATFGFPDELYGEDVAACVV
                     LKDGREATAEEIAAYCREHLADYKCPKVVRVVASLPKGPTGKVLKRELAREFKSISQ"
     gene            5060..6022
                     /locus_tag="VD968_10190"
     CDS             5060..6022
                     /locus_tag="VD968_10190"
                     /inference="COORDINATES: protein motif:HMM:NF039409.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6328 family protein"
                     /protein_id="HYE14797.1"
                     /translation="MAKLKDKVGHALDEARMLVIGAQILLGLQFRSFFEKGFEQLPVI
                     SRIVKLSSLALMLLTIGLLIAPSAYHRLVEGGEDTHEIHRYTSKIMTVALMPFALALG
                     LDLYVASEEILGWKAGAAAGLLGLVLALSFWYLLELYSRRERAHEIAEARKESEEMES
                     KQEGEGGGKGGKTGLNSKIKHVLTEARVVLPGAQALLGFQFLAILTESFDRLPNASKY
                     VHLAGLGLIALTIVLLMTPAAYHRMVEQGEETEHFHRFASKMIVAALVPLALGIAGEV
                     YVVVQKVTDSQLVSVVSGLVTLALFWELWFGLTLYRRTQRKFAD"
     gene            6037..7350
                     /locus_tag="VD968_10195"
     CDS             6037..7350
                     /locus_tag="VD968_10195"
                     /inference="COORDINATES: protein motif:HMM:TIGR01891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HYE14798.1"
                     /translation="MKLRRTHLFATLLLAAFAALTPNANAGRQGAAAARRERVARTAE
                     ALREQLVAQRRDFHMNPELSNREERTSRVVAERLRALGLTDIKTGVAKHGVTALLVGG
                     KPGPVVAVRADMDALPIQETLDVPYKSRNPGIKHACGHDAHTTVELGVAEVLSKMREE
                     VRGTVKLIFQPAEEGAPAGEEGGAALMIKEGVLENPRPSAIFGLHTEPNVQAGQVGYH
                     SGPAMASSDTFNIVIRGKSAHGAQPQNGVDAVLVASECVLALQTIRSRRTDPLEPLVI
                     TVGTIQGGARHNVIAAEVKMTGTMRTLNERVRERSIALMKETLQSITAAYGATFELNF
                     EDSNPVTYNEPSLVERTLPTMRAVLGGENVLAIKPFMPAEDFSRYQKIIPGFYYFLGV
                     GNRARGITAGWHTPEFDIDEESLVVGVKVMSNVLLDYLDRNAGKQ"
BASE COUNT         1240 a         2420 c         2463 g         1324 t
ORIGIN      
        1 gcgagcttct cggccaggtc gccctgcggg cggttggcgt agagcgtgga ggtgtgcgag
       61 atggtgttga gctgctcgat gatggcggcg ttgacgcgcg ggtttgcgtg gccgacgctc
      121 accgttagga cgccgccgaa gcagtcgagg tagcggtcgc cgcggtcgtc ccagacgtac
      181 tgcccctcgc cgcgcacgag cgcgagcggc tcctggtagt aggtggcgac cgcagggaag
      241 aggaactctt tgtgcttgcg gacgatttcc gactgctgcc tgccctgctc ggcggtgctc
      301 atctgcgttt ctccgtgatg actttagtgt tgatttcggc cgcggcgccg tcgtcacgcg
      361 gatctttgtt tgtaagcttt gccctcgttc ttgatcctcg tgaagaggat gtagaagcac
      421 cagactatcg agagtaaccc gatgatgacg gcgggcagtc cgccgattgc gcgctcgatt
      481 gacttgccgt agtagaagac gacggccggg acggcgagcg cgagcagcgc cagcaggtac
      541 ggccgcacga cacggccggc cgacaggtcg cccctctcaa gaacctcgaa gccgtaggtc
      601 tcgcggccgt agctgcgctt ctcttcggtc ggccgtatgc ggtaggtcac gagcgggaag
      661 acggggaaga agagcgccac gacccagcgc gtcgcctcga acgtgccgtc gcccgcgggg
      721 cggtagtcca gcagcgtcgt gccgaagccg ttgaaggtgt agaaggactt ccgcggagcg
      781 gcgagcccct tcatcctgtc ggtcagcttc cttatgtcct ctgtcttctg cgcgagcacg
      841 gcctcgccga gaggcttgcc gcactcgcgg caggccgact cgacggcggc accggcgttc
      901 tccgcgccgc actgcgggca gttgacgatc acggtgttgg tcgtctcagt cagcgctttt
      961 gactcctcgc ggcctcgaac tgccgctccg cctgccgcgt tcgctcggag gccgggtgct
     1021 ccgccttcaa ccgcgcgagc gtctgctcgg cctcggcgag cttgttcttc ctcaactgca
     1081 tggttataac ccccagcagc gcgaagtctg cctcctgccc gtcggggaac tctttaagat
     1141 acctctcgaa catcttgcgg gcctcgccgt gctcctcctg cttcgagagg ttcacgccga
     1201 gggcgatgat gacgctcgcg cgcgccttgg cgtcggcctc gacctcctta gtcttgagag
     1261 cgcgcttgaa gtagctcgtg ctcaaatcga agacgccgtt gcgccggtag aagtcgccga
     1321 cctgcacgag cgccggggcg ctctccttgt tcttctccag cgccgccatc cagtcggcga
     1381 ccggcgtgta gtcgcccggc acggcctgca tgacgcgcgt gagcagggcg tccttgccgg
     1441 ggccgtaacc gaagtgggcg gtgaggaagt tgccccacgg gtccgtgaag atgacggcgg
     1501 ggatgcggtc aaccctgtag cgcgcgcgct cggagccggt cgagtcgaag ttgagctgca
     1561 cgcagacgaa cttctgagcg agcccgacga cttctgggcg cggccagaag ctgcgctcca
     1621 tctccttgca cggcttgcac cagtcggcct ggaagtctat gagcatcggc ttgcccgtct
     1681 gcttcgcaag ctcgcgcgcc gcctcgaact tcctgtgcca ttcgacgccc gcggcacgca
     1741 cgggcgcggc ggccgcgagg gtgaggaata agactgtaag gagaatccgc atcacgttag
     1801 tagaggttcc cttcgcgcct gcggccggtg tagtcaacat agacgacctt aagctccgtg
     1861 tagaagtcga gcgccgtcga gccctgctcg cgctcgccga tgcctgttga cttgatgccg
     1921 ccgaagggta cgtgcgcctc gccgccggtg gtgggcgagt tgatgtgcgt catgccggtc
     1981 tctatctcgt caacgaagcg gaatatgcgc gcggcgtcgt tggtgaagat ggaggaggag
     2041 aggccgtact cgctgtcgtt tgctacctgc atggcctcgt cgaagtctcg gacgcgcaag
     2101 acggagagga cggggccgaa aatctcctcg cgcgcgatcc tcatgtcggg cgtgacgccc
     2161 gcgaacacgg tcggcttgac gaagtagccc ttgcggaggc cggggccgtc ggcaggctcg
     2221 ccgcccgtga cgaggctcgc gccgtcctcg cgccctacgt ccatgtagtg cagcacggac
     2281 ttgaactgcc cgccgtccac gatgggcccc atctcggttt cggggctcat gccgtcgccg
     2341 acccgtatgg cctcggcgcg cgcgacgatg cgctcgatga agttgtcggc gacgcggtca
     2401 acgacgatgg cgcggctcgt cgccgtgcag cgctggcccg tcgagccgaa ggcgccctgc
     2461 gccgttgact cgaccgcgag gttcaagtcg gcgtcttcga gtacgatgac gggattcttg
     2521 ccgcccatct cgcactgaac cttgacgccc cgtcgcgcgg cctgctcgta gagcttcagc
     2581 cccacgccgt tcgagcccgt gaaggaaatg gcgcgcacgg cgcggtggtt cactatctcg
     2641 tcgcccgcgt ctgagccgga gccgaggacg aggttgaggg cgccgggcgg gaggcccgcc
     2701 tctgagaaaa tctcgacgag gcggacggcc gtcgcgggcg tgacggtcgc gggcttgaag
     2761 acgaccgtgt tgccggcgac gagcgcgggc gcgatcttcc agacggggat ggcgacgggg
     2821 aagttccagg gcgttatgca ggcgacgacg ccgtgcggct gcttgacggt gtaggcgaag
     2881 ttcgcgggca gctccgaggg gatcgtctcg ccgttcatgc ggcgcgcttc gccggcgacg
     2941 aactctgcga cgtttacggc gcgctgaatc tccccgcgcg actcagccag cgtcttgccc
     3001 tcctcgcgcg tgagtatgcg ggcgaggttc tccttgtcgt cttcgagaag acgggcggcg
     3061 cgtgcgacaa tgcgcccgcg cgcgggggcg ggggtcgagc gccacgagcg gaatgcttcc
     3121 gaggccgcct cgaccgcccg cgccgcctcc tcgcgcgtcg agaggcggac tgtgccgagc
     3181 acgtcgtccg tgttggcggg gttgacgtta tccacccggt tccccgagac tgactcgacc
     3241 cacttgccgt tgacgaagtt gcggtaggtt tccataacgt gcggctccgg cgggccgccg
     3301 ccgggaaaag ttcggagtaa acgattaagc tgttttgggc tgcggccctt cggggcgcgt
     3361 tcggcggact tcgaaagcgc agaaaatata gcacacaggc ccggcgccgg ttgacaaaaa
     3421 tttgagacgg cggttctgaa aagggatggc cccgaataac ctgcgcgagc tgctcgaagc
     3481 gagggcggcc gccgcgcccg acaaagtctt catcttatcc gagagcgacg ggcgtgcgct
     3541 cacctaccag ggcttcgacc gtctggttga cctcaccgcg cgcatgctcg cctcccgagg
     3601 cgtcggcaag ggcgacgtgg tcagcctcct gatgccgaac agcatcgagt acgtcgtcgc
     3661 ctacttcgca tgcttcaagc taggggcgat agccgggccg gtcaactcac tcctgaagcc
     3721 cgaggagatc acctacgtcg ttggcgactc ggaagccaga gccatcatgt acggctcgca
     3781 gttcgagcca gccgtccggc gggtgcgcgg gaagatcggg agcctcaaga ctgccttcaa
     3841 gttcgacgcg gccgggcgca agaattttcc cggccacgcc ggcccgctgc ccgaagctga
     3901 cctcgggcgc gaggacgagg ccattatcat ctacacttcg gggactacgg ggaagccgaa
     3961 gggatgcctg ctcacgcacg cgaacctcat cgctaacgcg cggcagattt ccgagtggct
     4021 agggttcacc ggggaagatc ggctgctctc cgtcatgccg ctcttccaca tgaacgcggt
     4081 gtcggtgacg acgatgagcg cgctctacgc gggcggctcg acggtcgtga gcccgcgctt
     4141 ctcggcctcg cgcttctggc agatagtctc cgactacggc gtcacctctt tcggctccgt
     4201 cgcgacgatg ctctcgatgt tgctcaaaac ctaccccgag ggcgtgcctg aaggtttaga
     4261 cacgagccgg ctgcgcttcg ccatgtgcgg ctccgcgccc gtcccggccg aggtgctccg
     4321 aaggttcgag gagaccttca agtgcctcgt cgtcgaaggg tacggccttt cggagtcaac
     4381 gtgccgctcg accttcaacc cgcccgacga gcgcaggcgg ccaggctcgt gcgggctgcc
     4441 catcggcaac gagatgaagg tcttcgacga cgacgacagg gaactcccgg acggcgagcc
     4501 gggcgagata gtgctccgcg gcgagaacgt cttcaagggc tacttccgca acgaggaggc
     4561 tacgcgccgg gccttccgct ccggctggtt ccacacgggc gacgtgggct accgcgaccg
     4621 ggacggcttc ttctacatca tagaccgcaa atcggatatg attatccgcg gcggcgagaa
     4681 catttacccg cgcgagatag acgagctcct ctacaaacac ccggccgtag cggaggccgc
     4741 gaccttcggc ttccccgacg agctttacgg cgaggacgtg gcggcctgcg tcgtcctcaa
     4801 ggacggccgc gaggccacgg ccgaagagat agccgcttac tgccgcgagc acctcgccga
     4861 ctacaaatgc ccgaaggtcg tgcgcgtcgt cgcctctctg ccgaaggggc cgaccggcaa
     4921 ggttctcaag cgcgagctgg cgcgggagtt caagagcatt agtcagtagg ctccgcatgg
     4981 ctggcgccgg cgctgacacc cgaacgactc gctacagtag gttttttcta ctctctactg
     5041 gctacttctc aggtgattga tggcaaagct caaggacaag gtgggccacg cgctcgacga
     5101 ggcgcgcatg ctcgtcatcg gcgctcagat actgctgggc ctacagttcc gctccttctt
     5161 cgagaagggc ttcgagcagc ttcccgttat atccaggata gtcaagctct cgtcactcgc
     5221 gctgatgctc ttgacgatag ggctgctgat agcgccctcg gcctaccacc ggctggtcga
     5281 gggcggcgag gacacgcacg agattcaccg ctacacgtcg aagataatga cggtcgcgct
     5341 catgccgttc gcgcttgcgc tggggctaga cctctacgtt gctagcgagg agattcttgg
     5401 ctggaaggct ggcgcggccg cggggcttct ggggcttgtg ctggctttgt cgttctggta
     5461 cttgctcgag ctttactcgc ggcgcgagag agcgcacgaa atcgcggagg cgaggaagga
     5521 gtcggaggag atggagtcga agcaggaggg cgaaggcggc ggtaagggcg gaaagacggg
     5581 gctcaactcg aagataaagc atgtgctcac cgaggcgcgt gtcgtgctgc cgggcgcgca
     5641 ggcgctcctg ggcttccagt tcctggccat tctcacggag agcttcgacc gcctgcccaa
     5701 cgcctcgaag tacgtccacc tcgcgggcct cggcctcatc gcgctcacaa tcgtgctcct
     5761 gatgacgcct gccgcctatc accgcatggt cgagcagggc gaagagaccg agcacttcca
     5821 ccgcttcgcg tcgaagatga ttgtcgcagc gctcgtcccg ctcgcgctcg gcatcgcggg
     5881 cgaggtctat gtcgtcgtgc agaaggtgac cgactcgcag ttggtctccg tcgtctcagg
     5941 gctcgtcacg ctcgcgctat tctgggagct ctggttcggc ctcaccctct accgccgcac
     6001 gcagcggaaa ttcgcggact gactcggaga ctccggatga aacttcgtcg cactcatctc
     6061 ttcgcgactc tgctcctcgc cgccttcgcc gcgttgacgc cgaatgccaa cgcgggacgc
     6121 cagggcgcag ccgccgcccg tcgcgagcgt gtcgcgcgca cggccgaagc ccttcgcgaa
     6181 cagctcgtcg cgcagcgccg cgacttccac atgaacccgg agctttccaa ccgcgaggag
     6241 cgcacctcgc gcgtcgtcgc cgagcgcctc cgcgcgctcg ggctgacgga cattaagacc
     6301 ggggtggcga agcacggcgt cacggccctc ctcgtcggcg ggaagcccgg gcccgtcgtc
     6361 gccgtgcgcg ccgacatgga cgctctgccg attcaggaga cgctcgacgt gccgtacaag
     6421 tcgcgcaacc cggggataaa gcacgcgtgc ggccacgacg cgcacacgac cgtcgagctg
     6481 ggcgtcgccg aagtcctctc gaagatgcgc gaagaggttc gaggcaccgt caagttgatc
     6541 ttccagccgg ctgaggaggg tgcgcctgcg ggcgaggagg gcggcgcggc ccttatgata
     6601 aaagagggcg tgctcgaaaa ccctcggcca tcggccatct tcggcctgca caccgagccg
     6661 aacgtgcaag cgggccaagt tggctaccac tcggggcctg cgatggcctc gtccgacact
     6721 ttcaacatag tcatacgcgg gaagtccgct cacggcgcgc agccgcagaa cggcgttgat
     6781 gccgtgctcg tcgcctccga gtgcgtgctc gcgctgcaga cgattcgcag ccggcgcaca
     6841 gaccctctgg agcccctcgt catcacggtc ggcacgatcc agggcggcgc gcgccacaac
     6901 gtcatagccg ccgaggtgaa gatgacgggg acgatgcgca cgctcaacga gcgtgtgcgc
     6961 gagcgctcca tcgccttgat gaaagagacg ctccagagca tcacggccgc ctacggtgcc
     7021 accttcgagt tgaacttcga ggacagcaac cccgtcacct acaacgagcc ttcgctcgtc
     7081 gaacggacgc tgccgacgat gcgcgccgtc ctgggcggcg agaacgtgct cgccatcaag
     7141 cccttcatgc cagccgagga cttctcgcgc taccagaaga tcatccccgg cttctactac
     7201 ttcctcggcg tcggcaaccg cgcgcgcggc ataaccgccg gctggcacac gcccgagttc
     7261 gacatagacg aagagagcct cgtcgtcggc gtcaaagtca tgtcgaacgt cctgctcgac
     7321 tacctcgaca ggaacgccgg gaagcagtag cccgcaactc gatgttcttt accgattcgt
     7381 accaggctct caggcgcggc gagaagcggc gcgcgctgcg gctggtcatg ctatcagtca
     7441 tgacgct
//
LOCUS       DASPKR010000375        17334 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_52724, whole genome shotgun sequence.
ACCESSION   DASPKR010000375 DASPKR010000000
VERSION     DASPKR010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 17334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17334)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17334
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52724"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(144..2252)
                     /locus_tag="VD968_10200"
     CDS             complement(144..2252)
                     /locus_tag="VD968_10200"
                     /inference="COORDINATES: protein motif:HMM:NF021942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S46 family peptidase"
                     /protein_id="HYE14799.1"
                     /translation="MKLRRLWGAALAALVLLTGPAAAPALADEGMWTFNNLPRAEIKR
                     RYGFDVTDEWVRRVQSATVRFPNGTGSFVSPEGLVLTNYHIIEEVVTALSTPEKDLAK
                     EGFVARTRAEELKIPAYELNMLVSIEDVTARVNGAAKDGMTPAQAAEARLAEVGKIEA
                     EAASRTGLRADVVTLYQGGLYNLYLYKKYTDVRLVFAPEFQTAFFGGDPDNFNFPRYN
                     LDMALVRVYEDGKPLRPESYFRWSKSGAKEGDLVFVSGSPGTTQRLNTVAHLDFLREP
                     GIPLLLRVLESRRDSLKKYMAGGEEQTRRAQNELNYAENFIKVYKGQLEGLRDKALID
                     RKLRDERALRDFVNSDPRRKREYGDAWDVIAKARRDLAAYERDRRVLGGFSLADYAQT
                     AFNSVLFNHARTLVRLAEESSKPDSERLPEYTDARRPALEAALYSPSPIYEDFERVKL
                     AASLALLPEIYGRDHALVRKVLQGKTPEARAAELISGTKLRDVEARKGLAAGGAKAIA
                     ESTDPLIALARSIDAEARAVRKRYETEVLGVERAAYAKIARALFEKEGTGLYPDATFT
                     PRLSYGAVKGYTENGKRIPAFTDFAGLYERAARNNFKFPYNLVPRWVEKKSALDLKTP
                     FNFVTTNDIVGGNSGSPTFTRDLELVGLIFDGNIQSLVGNFHYDESVNRAISVDSRGM
                     LEVLRKVYGADAVADELTKG"
     gene            complement(2405..4720)
                     /locus_tag="VD968_10205"
     CDS             complement(2405..4720)
                     /locus_tag="VD968_10205"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYE14800.1"
                     /translation="MSLRKSPRHAFVLLLILSVTALAALVSSRGSASPAVADWRAKVD
                     PLVLEKAALGGQVEFFAYMGRQADLSGASALRTKEEKGSYVYESLTAAARESQPGVLQ
                     ALSALGVEHKSFWVTNAIYVKGDLAAIQAVASLPEVAAVYPSGTGALQLPPQEEAASS
                     TEAEGGAVVADSAFADPSPEPGLLRVRANEVWAMGIEGRGVVVAGADTGVFWEHSALK
                     GKYRGWDGAAANHSYNWHDAIKNPNTGCAGSTTAPCDDDVLLGGGHGTHTVGTMVGDD
                     GGNNRVGMAPEAKWVACRNMNNGVGVVPTYLECMEWFIAPTDINNANPDPSKAPHVIN
                     NSWGCVEGCAQPLLQDPLRASRAAGIIYVVSAGNDGPECNTLQFPLARYPEAFTVGST
                     THGTDVISSFSSRGTVLGDPTAPLGLVKPNISAPGSSVRSALRNGGYGSLSGTSMAGP
                     HVAGLVALVISANPKLAGEVDRVEDIIEATAARKTTTEGCGGDTSSTVPNNVYGWGRI
                     DAFTAVLDALPPDAVDDDLTMAAKTSLRFDVLANDTDPDGDTLAVGAVGAASHGTVTN
                     NGDGTLTYTPAADFSGTDTFTYTACAPEGCEVGGDTATVTVVVKPPFVNYALASEGSK
                     VLASSTYKPGNYSPAGVINGDLRGLLWSKGGGWKDATANTYPDFIEITFNGLKPLTQV
                     RVTSLQDDPKSQLEPTPGMTAGVNGVLDYTVLYRVGTQWVTLGSVTDNAFVLSGLSFP
                     EVRTNKIRVVFTRSRSPYTKVIEVEAFGPSL"
     gene            complement(4897..5637)
                     /locus_tag="VD968_10210"
     CDS             complement(4897..5637)
                     /locus_tag="VD968_10210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYE14801.1"
                     /translation="MFRRAAKGLFRRLGLEVRRIDASREESERLVQQKFPGKHETSGF
                     VLHQYLKEDGSFDYERYRRAQTEGNRIKLEYVWAREENISFLSDYILRVIGQPRFGIC
                     HGTRRGKEQEWFRKYLGCEVIGTEISDTAEQFPHTIRWDFHETKPEWIDSADFIYSNS
                     LDHSYDPEKCLNAWMSCVRPGGLCLIEHSSGHEGASELDPFGAGLALMPYLILKWGKG
                     RYGVRELVEAPSKGIYVDYLYFIVVQRF"
     gene            complement(5933..6565)
                     /locus_tag="VD968_10215"
     CDS             complement(5933..6565)
                     /locus_tag="VD968_10215"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYE14802.1"
                     /translation="MSGGKKISIVVIDDQAVVRQGFVSLINTVPDMEVVAEGTNGQQA
                     VELYRKHRPDVVLMDLRMPVMGGVEAIKAIRREFPSAHVIVLTTYDGDEDIYRSLQAG
                     AQGYLLKDMFFEELEDAIRAVNAGGRRIPGVVAERLAERMGGSDLTGRELEVLELIVA
                     GQSNKEIGASLRISEATVKSHINSILSKLGVADRTQAATTALQRGLVHLP"
     gene            complement(6581..9538)
                     /locus_tag="VD968_10220"
     CDS             complement(6581..9538)
                     /locus_tag="VD968_10220"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HYE14803.1"
                     /translation="MRLSIRPGDHKLKALLLLPLLAAPFLAAQERADLSQLGHQVWQT
                     ENGLPQNTVHSVVQSADGYIWAATEEGLARFDGAGFDVFDKQSTPQLPSNDIRHLNAT
                     AKNALWVSTSAGLVRLFNGEWTAFTAREGLPGDDVAMTYEDREGAVWIATSSGLGRFK
                     EGAFTVFTSREGLAGASVLSLAEASDGALWVGTRSGLSRFDGTGFAHIEAPEGFTSGG
                     VDVMRRDGAGRLWLGTPDGLLAHEGGRFARYTAAEGLPDNRVLSLAAGRGGELWVGTA
                     AGLCRFLEGRCEPLPSGEAVSNGIVLSVHEDAEGSLWAGTESGGLHQLKPKKFTTYTT
                     REGLASDLVKAIYEDRRGQVWVGTYGGGLSLLREGKITNYTTKDGLPSNIILALFDDA
                     DGNLWVGTPDGLSRLRDGRFDTFTSADGLANDFVRSIHADRSGGLWVGTRGGLTYMKG
                     GRFKIYTAADGLPNDFVGTIYEDREGAVWIGTLGGLSRFSAGQFKSYTTADGLSDNVV
                     ISLHGDAEGRLWIGTNGGGLNLLRDGKFTPFTTREGLPNDTIYRILEDGSGNLWMSCN
                     KGVFRLSKRELEEFADGRARALAPVVYGTADGMETRECSGGGHPSGWRGRDGRLWFST
                     IRGVASVDPKRLRPNMQPPPAVVEEVRVDGELVRPAGRVELAPGKTRFDFHYAGLSFV
                     APEKVRYRYRLVGFDPDWVDGGARRVAYYTNLRPGDYRFEVVACNNDGVWSSAPASFA
                     FTLRPHFYRTLWFYALCALALALVVGQIYFLRVRQMKARFAAVLQERNRIAREIHDNL
                     AQEILGASVQLELVARMLAVSPEKAKSHLDRARSLVRSSIAEARRYVWDLRSQSLDDR
                     DLPAALSEMTRRLAAEGGAQTQFAVGGTFRPLTPQVENNLLRIGQEAVNNAVRHAGAK
                     LISVRLDFDAGSVRLSVSDDGRGFDPAAAAGNGHFGLLGMRERAEQMGGELKIESEPG
                     RGTEVSVSVPIGS"
     gene            9674..10216
                     /locus_tag="VD968_10225"
     CDS             9674..10216
                     /locus_tag="VD968_10225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14804.1"
                     /translation="MKTSLVTKAALASVLLIGLALSALASPAYRARWRAATEQELRRV
                     IPARAPVVKENIETEFRTASGATDGRGRYIAGVVMITAGYSAEGKYSHFFVTQVALRA
                     GDVDLPPGQYVFGYRRTGDDTIQVSFYRASSGEPVGEAAAQRSRRGHAVRSLLVSPPA
                     AGGKGFIQIGRFLLDYRVAG"
     gene            10355..13357
                     /locus_tag="VD968_10230"
     CDS             10355..13357
                     /locus_tag="VD968_10230"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE14805.1"
                     /translation="MKRTLLAHAAALAVCAALSLAHAAAAQQLASSSLRGSVVDPNGA
                     VIPGAKIKAAQRETGAERTTTTNDEGQFVIPGLPVGRYDVTAEHVGFKTATVKDVLLQ
                     VGQSFTLDIRLEVGSIGIIIDGDLPPSQPINTYSAVVENVISDQEIAALPLNGRNFLE
                     LALLTPGNAPAPNFDPTKTNTLVISSAGQFGRGGSVTVDGADNNDDVVGGAVQNISQD
                     AVQEFQVATNRFDARLGRTGSAVINVVTKGGTNETHGSASAFFRGSLFQALPATFDRS
                     TGEEPPFDREQYSFTLGGPVKRDRAWYFGSFEYRNQDGAVLVGTRDLATRSIRRGFAD
                     APLDDLLGTTRFDWNASEYDRLTLRYSIQREEGTAASTLIRSIGSASQRQTSRNHTHS
                     FVTNYTRLLSPRHVNEARFSYSTFINRTTPVTAGPQLTFPSIQDGASFRVPQQTRQKR
                     LQFADTLSMARGNHALAFGGEFQRVLSDFDLGVFREGRIELIEDFPDFDRNGDGRTDD
                     NDLLFAVTLRSAFPDRPLVIPGADNNYFAAFVQDDWRVSPRLTLNLGLRYEIDTDVKN
                     VSRFDEINPLVRPFLRGERRADRNNFAPRVGFNWSTSSGRTSVHGGYGIYYDRVTLEV
                     QSLERGLDGRALPIEVRAGNLFFIPPPCLFNPACGQFPPPAPTLANPFAGFLLPGAGA
                     GGINIIDNRLQNPMVQQTNLGVQHEFSRGYLVRADYLHNFGTHFIIGRTIGSVFNPVV
                     GGPDLVKNIESSVKTKYDGLLLSFERRFSGRYGFRASYTLSKAFNYANDDQIPFSNGP
                     VNPENLQLEYGPTPNDQRHRFVFSGLFDAPLGLRLAPIWTVASGVPMDILLPDGSFRI
                     PTLQRNAGGRLFRTGAELNEFIRRINAAGGVPGVGLLPLVSDEARLSDSFNSLDLRLA
                     RPFAFGERLRLEPIAEVFNLFNVTNVLGVSNVNYSGFSNVLARDSNDPSDPGFLRSSS
                     FGRPVTTAGGVFGSGGPRAFQFAVRLTF"
     gene            complement(13436..15229)
                     /locus_tag="VD968_10235"
     CDS             complement(13436..15229)
                     /locus_tag="VD968_10235"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter family protein"
                     /protein_id="HYE14806.1"
                     /translation="MKLTLLDWLIIAAYFALSLAVGLYYARRAGRSTEEFFLSDRSMP
                     WWLAGTSMVATTFAADTPLAVTEMVARNGVAGNWLWWSMLASGMLTVFFFARLWRRAE
                     VMTDVEFVELRYSGRPAAFLRGFRALYLGLPINLIIMGWVNLGMAKVLSGTLGLAKWQ
                     ALALCLGITFFYSILSGFWGVVVTYAVQFVVAMAGSVALAVFAVRAAGGLGALKERLA
                     GAVPSGGGGPFGPDAVSLWSDGTEPWMLPAVTLAAYLCVNWWASWYPGSEPGGGGYVA
                     QRIFSAKDERHGLLATLWFNVAHYALRPWPWILVALCSLVLYPAGTTVNPETGQPDAA
                     FGYVRVMTDFLPVGWRGLLLASFAAAYMSTVSTQMNWGSSYLVNDFYRRFVRKGASER
                     HYVLAARAATLLTVLLSVAVTYYMNRITGGWELIMSLGAGTGLVYILRWYWWRVNAWS
                     EISAMAAALAVSLGLRYFDAFDASAPRGFALTILTTVGATTLVWLAATFATRPEPREK
                     LESFYRLARPAGPGWRPVAGDAGRGGRRESLAPNFLNWALGVALVYSVLFATGEVIFG
                     TWGRAALFTASAAASGALLYWSLTRKGWGRE"
     gene            complement(15231..16616)
                     /gene="glmM"
                     /locus_tag="VD968_10240"
     CDS             complement(15231..16616)
                     /gene="glmM"
                     /locus_tag="VD968_10240"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR03990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HYE14807.1"
                     /translation="MSRGRAMRAIPTLKISISGVRGVVGESLTPTLLVRFAQAFGTYT
                     GPGMIVMGRDTRPSGEMVRQAAVSGLLSSGCRVVDLGVCPVPTVQLLVRERRARGGIA
                     ITASHNPAEWNALKFINSEGLFLSGAQARQLLDIYHQGEYVKVAGAEMRGVEHDAGAL
                     DAHVRAVLDAVGPLPAGGRRLRAAVDSCNGAGSVVAPRLLEALGAEVLALNVTPDGSF
                     PRGAEPLPENLGALCAAVREAGADVGFAQDMDADRLAVVSERGEPVGEELTLVLAAMR
                     VLAREPGAVVANLSTTTTLDYVAGKFGCPVYRSKIGEANVTEEMRRVGAVIGGEGNGG
                     VIYPRVNFARDSLVGMALVLHLLAETGRAVSELVSGLPPSFIWKEKLACRSDRIGRAL
                     RAVRAAYAGLPVDARDGVKVTVPGAGWLLVRGSNTEPILRIVAEAETEARARALASEA
                     REHVLAAVGSP"
     gene            complement(16613..>17334)
                     /locus_tag="VD968_10245"
     CDS             complement(16613..>17334)
                     /locus_tag="VD968_10245"
                     /inference="COORDINATES: protein motif:HMM:NF014879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14808.1"
                     /translation="PEPRPRTMGQLRAVVRAGRADVGFAHDADGERLGVVTDGGEVLP
                     EEATLAAAAEIELARRGGRGATVVTNVSTSGAVDLIAARHGAAVVRTPVGQAFISEAM
                     AETGAVVGGEGSGGVVVPRVQLTHDAAAAAGLILEHVALSGERVSELAARLPRPAMIK
                     HDIAAEPNRIFSLLQRLHDAVEREGVAYDQTDGIRVAWPDGWAHVRVSGTESLVRVIA
                     EAGTEARARELLDWARDRLGR"
BASE COUNT         2709 a         6069 c         5772 g         2784 t
ORIGIN      
        1 gccgcctcta cctccgcgac caggacacca tctacgcctt cgacgtgcgg cagaagaagt
       61 aagacggcaa cgagatagaa aagagaagag ggttgacgac agaacgaccg tcgtcaaccc
      121 tctttcttta gttggtgagc gtttcagccc ttggtcagct cgtcggccac ggcgtcggcg
      181 ccgtaaacct tccgcaacac ttcgagcatg ccgcgcgagt caacggagat ggcgcggttg
      241 acggactcgt cgtagtggaa gttgccgacg agcgactgta tgttgccgtc gaagatgagc
      301 ccgaccagtt cgagatcgcg cgtgaaggtg ggcgagccgg agttgccgcc gacgatgtcg
      361 ttagtggtga cgaagttgaa gggcgtcttt aagtcgagcg ccgacttctt ctcgacccag
      421 cgcggcacga ggttgtacgg gaacttgaag ttgttccgcg ccgcccgctc gtagaggccg
      481 gcgaagtccg taaaggcggg gatgcgcttg ccgttctctg tgtagccttt gacggccccg
      541 taggagaggc gcggcgtgaa ggtcgcgtcc gggtagaggc cagtcccctc cttctcgaaa
      601 agcgcccgcg cgatcttcgc gtaagccgcg cgctcgacgc ccaagacctc cgtctcgtag
      661 cgcttgcgca ccgcccgcgc ctcggcgtca atcgagcgcg cgagcgcgat cagcgggtct
      721 gttgactcgg ctatcgcctt cgcgccgccc gcggccaaac ctttgcgcgc ctcgacgtcc
      781 ctgagcttcg tccccgaaat cagctcggcc gcgcgcgcct cgggcgtctt gccctgtagg
      841 actttgcgca cgagcgcgtg gtcgcggccg tagatttccg gcaggagcgc gagcgaggcg
      901 gcgagcttca cgcgctcgaa gtcctcgtag atgggcgagg gcgagtagag cgcggcctcg
      961 agcgcgggcc ggcgcgcgtc cgtgtactca ggcaggcgct ctgagtcagg cttcgaggac
     1021 tcctcggcca ggcggacgag cgtgcgggcg tggttgaaga ggacggagtt gaaggccgtc
     1081 tgcgcgtagt ccgcaaggga gaagccgccg agcacgcggc ggtcgcgctc gtaggcggcg
     1141 aggtcgcgcc gcgccttcgc gataacgtcc caggcgtcgc cgtattcgcg cttgcggcgc
     1201 gggtcggagt tgacgaagtc gcgcagcgcg cgctcgtcgc gcagtttgcg gtcaatcagc
     1261 gccttgtcgc gcaaaccttc gagctggccc ttatagacct tgatgaagtt ctcggcgtag
     1321 ttcagctcgt tctgggcgcg gcgcgtctgc tcctcgccgc ccgccatgta cttcttgagc
     1381 gagtcgcggc ggctttccag aacgcgcagc aggagcggta tgccgggctc gcgcaggaag
     1441 tcgaggtgcg cgaccgtgtt gaggcgctgc gtcgtgccgg ggctgccgga gacgaacacg
     1501 aggtcgccct ccttcgcgcc cgacttcgac cacctgaagt agctctcggg cctgagcggc
     1561 ttgccgtcct cgtaaacgcg cacgagcgcc atgtcgaggt tgtagcgcgg gaagttgaag
     1621 ttgtcggggt cgccgccgaa gaatgcggtc tggaactcgg gcgcgaagac gaggcgcacg
     1681 tccgtgtact tcttgtagag gtaaaggttg tagagcccgc cttggtagag cgtgaccacg
     1741 tcggcgcgaa ggcccgtgcg cgaggcggcc tcggcctcga ttttgcctac ctcggcgagc
     1801 cgggcctcgg cggcctgcgc gggcgtcatg ccgtctttcg cggcgccgtt gacgcgggcc
     1861 gtcacgtcct cgatggagac gagcatgttc agctcgtagg ccgggatctt cagctcctcg
     1921 gcgcgcgtgc gcgcgacgaa gccctccttg gcgaggtctt tctcgggcgt gctgagcgcc
     1981 gtgaccactt cctcgatgat gtggtagttc gtgagcacaa ggccctcggg cgagacgaag
     2041 gagcccgtcc cgttcgggaa gcgcacggtc gcgctctgca ctcggcgaac ccattcgtcg
     2101 gtgacgtcga agccgtagcg gcgctttatc tcggcgcggg gcaggttatt gaaagtccac
     2161 atgccctcgt cggcgagggc gggcgccgcc gccgggcctg tcaggagcac tagcgccgcc
     2221 agcgccgcgc cccacagtct tctcagcttc atcgcttatt cctctgtcgt ccgggattca
     2281 cgggagctgt ttagattaca acgccgcgcg ccgggatgca cggccggacg ccagcgcccc
     2341 cgccgcagaa gagatttcca cggcgggggc gcgagcgtct gtccgaaggg cctgctgccc
     2401 ggctctacag cgacgggccg aaggcctcga cctcgatgac cttcgtgtag ggcgagcgag
     2461 accgcgtgaa gaccacgcgt atcttgttcg tcctcacttc ggggaagctg aggccgctca
     2521 ggacgaaggc gttgtcggtc acgctgccga gcgtcaccca ctgcgtgccg acgcggtaga
     2581 gaaccgtgta gtcgagcacg ccgttgacgc cggccgtcat ccccggagta ggctcgagct
     2641 ggctcttcgg gtcgtcctgt aggctcgtga cgcgaacctg cgtcagcggc ttcagcccgt
     2701 tgaaggttat ctcgatgaag tcggggtacg tgttggcggt ggcgtccttc cagccgccgc
     2761 ccttgctcca gagcagcccg cgcaggtcgc cgtttatgac gccggccggc gagtagttgc
     2821 cgggcttgta tgtggacgag gccaagacct tcgagccctc ggaggcgagc gcgtagttga
     2881 cgaacggcgg cttgacgacg accgtgaccg tggccgtgtc gccgcccacc tcgcaaccct
     2941 cgggcgcgca ggccgtatag gtgaacgtgt ccgtgccgct gaagtcggcg gcgggcgtgt
     3001 aggtcagtgt gccgtcgccg ttgttcgtga cggtgccgtg cgaggccgcc ccgaccgcgc
     3061 cgaccgcgag cgtgtcgccg tccgggtccg tgtcgttggc gagcacgtcg aagcgcagag
     3121 aggtcttcgc ggccatcgtc aggtcgtcgt ccacggcgtc gggcggcagg gcgtcgagga
     3181 cggcggtgaa cgcgtcaatg cggccccagc cgtaaacgtt gttcgggacg gtcgagctgg
     3241 tgtcgccgcc gcacccctcc gtcgtcgtct tgcgcgcggc cgtcgcctcg atgatgtcct
     3301 cgacgcgatc cacctcgccg gcgagcttcg ggttggccga gatgacgagg gcgacgaggc
     3361 cggccacgtg cggcccggcc atgctcgtcc cgctcaggga gccgtagccg ccgttgcgca
     3421 gcgccgagcg cacgctagag ccgggcgccg agatgttcgg cttgacgagg ccgagcggcg
     3481 cggtagggtc gccgaggacg gtgccgcggc tgctgaagct ggatatcacg tcggtgccgt
     3541 gggtggtcga gcccacggtg aaggcctcgg ggtagcgcgc cagcgggaac tgcaaggtgt
     3601 tgcactcggg gccgtcgttg ccggcggaga cgacgtagat gatgccggcg gcgcggctgg
     3661 cgcgcagcgg gtcttgcagc agcggctggg cgcagccctc gacgcagccc cacgagttgt
     3721 taatcacgtg cggggccttc gacgggtcgg ggttggcgtt gttgatgtcg gtaggggcga
     3781 tgaaccactc catgcactcc aggtaggtag gcacgacgcc cacgccgttg ttcatgttcc
     3841 ggcaggccac ccacttcgcc tcgggcgcca tgccgacgcg gttgttcccg ccgtcgtcgc
     3901 ccaccatcgt gccgacggtg tgcgtgccgt ggccgccgcc caggagcacg tcgtcgtcgc
     3961 atggggcggt cgtcgagccg gcgcagcctg tgttcgggtt cttgatggcg tcgtgccagt
     4021 tgtagctgtg gttggccgcc gcgccgtccc agccgcggta cttgcccttg agggcggagt
     4081 gctcccagaa gacgcccgtg tcggcgcccg ccaccacgac gccacgcccc tcgatcccca
     4141 ttgcccagac ctcgttggcg cgcacgcgca gaaggcccgg ctcggggctg gggtcggcga
     4201 aggcggagtc agcgacgacg gccccgcctt ccgcctcggt cgaggaggcg gcctcttcct
     4261 gcggcgggag ctggagcgcg ccagttccgc tcggatagac ggccgcgact tcggggagag
     4321 aggcgacggc ctgtatcgca gcgaggtcgc ccttgacgta tatggcgttc gtgacccaga
     4381 agctcttgtg ctcgacgccg agcgcggaga gcgcctggag cacaccgggc tgcgactcgc
     4441 gcgcggccgc cgtcaggctc tcatagacgt agctcccctt ctcctccttc gtgcgcagcg
     4501 ccgaggcgcc gctcaggtca gcctgccgtc ccatgtaggc gaagaactcg acctggccgc
     4561 cgagcgcggc cttctcgagg acgagcgggt caaccttcgc gcgccagtcc gccaccgccg
     4621 gcgaggccga gcctcgcgag gagaccagcg cggccagcgc tgtgacggaa agaatcaaca
     4681 aaaggacgaa agcgtgtctg ggcgatttcc tcaggctcat agagtatccc tcctgcgtcg
     4741 tttacggcgg cgcggccgcg agtttcccta gcgatagtcg ggctttatcg tcgtgcgcgg
     4801 gaatttagcg gcgggtggtt gagaaatact tgagcgccga tgggcggcgg gcaaacgcct
     4861 gttatttcag gctttagcgg ggagtgggcc gaggcgtcag aatctctgga cgactatgaa
     4921 gtagaggtag tccacgtaga tgcccttcga gggcgcctcg accagctcgc gcacgccgta
     4981 gcgccccttg ccccacttca ggatcaggta gggcatgagc gctaagccgg ccccgaacgg
     5041 gtccagctcg gacgcgccct cgtggcccga gctgtgctcg atgaggcaga ggccgcccgg
     5101 ccgcacgcag ctcatccagg cgttcaggca cttctcgggg tcgtaggagt ggtcgagaga
     5161 gttgctgtag atgaagtcgg cggagtcaat ccactcgggc ttcgtctcgt ggaagtccca
     5221 gcggatggtg tgcgggaact gctcggcggt gtcggagatt tccgtgccga tcacttcgca
     5281 gcccaggtac ttgcggaacc actcctgctc cttgccgcgg cgcgtcccgt ggcagatgcc
     5341 gaagcgcggc tggccgatga cgcgaaggat gtagtcggac aggaaggata tgttctcctc
     5401 gcgcgcccag acgtactcga gctttatgcg gttgccctcg gtctgcgcgc ggcggtagcg
     5461 ctcgtagtcg aacgagccgt cctccttcag gtactggtgc agcacgaagc cgctcgtctc
     5521 gtgcttgccg gggaacttct gctgaaccag ccgctcggac tcctcgcgcg aggcgtcaat
     5581 cctcctgacc tcaagcccga gcctgcggaa cagccccttc gctgcgcgtc taaacacaca
     5641 tgcctcccgc ccgtggtctc acgcgaactc gtgacgcatt ctaacccaat tcgacggcgc
     5701 tggggccgcg cgccagacgc aagaaagccc ggcgtggcgt ttgagcgtga tcggggtgac
     5761 tcacaggttg cgcgctgttc ggacggcaac gattaaggag tgagttgacc tgtgattgat
     5821 ctcaaacggc gccgggcttt ccaatggccc actgcgcccg caaagtagca cggccgaggc
     5881 ggcggcgtca tcggcgcagg gttggcgcgc cgcgtcaaac tttagtttga ccttaaggaa
     5941 ggtgcacgag gccgcgctgc aaggcggtcg tggccgcctg cgtgcggtcc gcgacgccga
     6001 gcttgctcag gatgctgttg atgtggctct tgaccgtggc ctcgcttatc cgcaggctcg
     6061 cccctatctc cttgttgctc tgcccggcga ctatgagttc gagcacctcc agttccctcc
     6121 ccgtcaggtc agagccgccc atgcgctcgg cgagcctctc ggccacgacg cccggaatcc
     6181 ttcggccgcc cgcgttgacg gcgcgtatgg cgtcctcgag ctcctcgaag aacatgtctt
     6241 tgagaagata gccttgcgcg ccggcctgca aggagcggta gatgtcctcg tcgccgtcgt
     6301 atgtggtgag cacgatgacg tgggccgacg ggaactcgcg ccttatggcc ttgatggcct
     6361 cgacgccgcc catgacgggc atgcgcaagt ccatgagcac cacgtcgggg cggtgcttgc
     6421 ggtatagctc gacggcctgc tggccgttcg tcccctcggc cacgacctcc atgtcaggca
     6481 cggtgttgat gagcgagacg aacccctgcc tgacgaccgc ctggtcgtct atgacgacga
     6541 tgctgatttt cttcccgccg ctcaaaggcg ccctcccctc tcaacttcct atcggcacgc
     6601 tgaccgagac ttccgtgcct cggcccggct cgctctcgat tttcaactct ccgcccatct
     6661 gctctgcgcg ctcgcgcatg ccgaggaggc cgaagtggcc gttgccggcg gcggccgcgg
     6721 ggtcgaagcc tcggccgtcg tcggagacgc tcaggcgcac gctccccgcg tcgaagtcta
     6781 gacgcacgct tatcagcttc gcgcccgcgt ggcgaacggc gttgttgacg gcctcctggc
     6841 cgatgcgaag caggttgttc tcgacctgcg gcgtgagcgg ccggaacgtg ccgcccacgg
     6901 cgaactgcgt ctgcgctccg ccctcggccg ccaggcgccg cgtcatctcg gagagcgcgg
     6961 ccggcaggtc gcggtcgtcc agggactgcg agcgcaagtc ccagacgtag cgccgcgcct
     7021 cggcgatgct gctcctgacg agcgagcggg cgcggtcgag gtgcgactta gccttctcgg
     7081 gcgagacggc aagcatcctc gcgaccagct ccagctgaac ggaggcgccg agaatctcct
     7141 gcgcgaggtt gtcgtgaatc tcgcgcgcga tgcggttgcg ctcttgcagc acggccgcga
     7201 accgcgcctt catctgccgc acgcgcagga aataaatctg cccgacgacg agcgccagcg
     7261 ccagggcgca cagcgcgtag aaccagagcg tgcggtagaa gtgcggcctg agcgtgaaag
     7321 cgaacgaggc gggcgcgctg ctccagacgc cgtcgttgtt gcaggccacg acctcgaacc
     7381 tgtaatcgcc cggcctcagg ttcgtgtaat aggccacgcg gcgcgcgccg ccgtcaaccc
     7441 agtcggggtc gaagccgacg aggcgatacc tgtacctgac cttctcgggc gcgacgaagc
     7501 tgaggcccgc gtagtggaaa tcgaaccgcg tcttgcccgg cgcgagctcg acccggcccg
     7561 cgggcctcac aagctcgccg tcaacgcgaa cctcttcgac aacggccggg ggaggctgca
     7621 tgttcggcct gagccttttg gggtcaaccg aggcgacgcc cctgatggtc gagaaccaca
     7681 aacgcccgtc gcggccgcgc cagcccgagg ggtggccgcc gccgctgcac tcgcgcgtct
     7741 ccatgccgtc ggccgtgccg tacacgaccg gggcgagcgc ccgagcgcgc ccgtcggcga
     7801 actcctcaag ctctcgcttc gacaaacgaa acacgccctt gttgcagctc atccagaggt
     7861 ttcccgagcc gtcttcgagt atgcggtaga tggtgtcgtt cggcagcccc tccctcgtcg
     7921 tgaacggtgt aaactttccg tcgcgcagga ggtttaagcc gcccccgttc gtgcctatcc
     7981 agagccggcc ctccgcgtcg ccgtgcaaag agatgacgac gttgtcggag aggccgtcgg
     8041 cagtcgtgta gctcttgaac tgccccgcgc tgaagcgcga caggccgccg agcgtgccta
     8101 tccagacggc gccctcccgg tcttcgtaga tggtgccgac gaagtcgttc ggcaggccgt
     8161 ccgccgccgt gtagattttg aatcgcccgc ccttcatgta ggtcaggccg ccgcgcgtgc
     8221 cgacccagag gccgcccgag cggtcggcgt ggatggagcg cacgaagtcg ttggcgagcc
     8281 cgtcggccga cgtgaaagtg tcgaagcggc cgtcgcgcag gcgcgagagg ccgtcgggcg
     8341 tgccgaccca gaggttcccg tcggcgtcgt cgaagagggc gaggatgatg ttgctcggca
     8401 gcccgtcctt cgtcgtgtag ttcgtaatct tcccttcgcg caggaggctc aggccgccgc
     8461 cgtatgtccc gacccagact tgcccgcggc ggtcttcgta gatggccttg acgaggtcgc
     8521 tcgccagccc ctcgcgcgtc gtgtaggtcg tgaacttctt tggcttgagc tggtgcaggc
     8581 cgccggactc cgtgccggcc cacaggctcc cctccgcgtc ctcgtggacg gagagcacga
     8641 tgccgttcga gaccgcctcg cccgaaggca gcggctcgca gcggccttcg aggaagcggc
     8701 acagccccgc ggccgtgccg acccacagct cgcccccccg gcccgccgcg agcgagagca
     8761 cgcggttgtc gggcagcccc tcggccgccg tgtagcgcgc gaagcggccg ccctcatgcg
     8821 cgagcagccc gtcgggcgtg ccgagccaga ggcgccccgc gccgtcgcgg cgcatcacgt
     8881 ccacgccgcc ggaggtgaag ccttcaggcg cctcgatgtg ggcgaaacct gtcccgtcga
     8941 agcggctcag gcccgaacga gtgccgaccc agagcgcgcc gtccgacgcc tcggcgagcg
     9001 agaggacgct tgcgcccgcc agcccctcgc gcgaagtgaa aaccgtgaag gcgccctcct
     9061 taaaacgccc gagccccgaa gacgtggcaa tccagacggc gccctcgcgg tcttcgtagg
     9121 tcatcgcgac gtcgtcgccg ggcaggccct cgcgcgcggt gaaggccgtc cactcgccgt
     9181 tgaagagtcg gacgaggccg gcggaggtgc tgacccagag ggcgttctta gcggtcgcgt
     9241 tgaggtggcg tatgtcgttg ctcggaagct gcggcgtgct ctgcttgtcg aacacgtcga
     9301 agcccgcgcc gtcgaagcgc gcgagcccct cctcggtcgc ggcccagatg tagccgtcgg
     9361 cggactgcac gaccgaatgc acggtgttct gcggcaggcc gttctccgtc tgccagacct
     9421 ggtggcccaa ctgcgagagg tctgcgcgct cctgggccgc gaggaacggc gcggcgagga
     9481 ggggcagtag cagcagcgct ttgagtttat gatcgccggg gcggattgac aggcgcatcg
     9541 gtcgagacag ccgcgaaaac tcccgagtga ctgccgcgaa ttatagcgga agagttcggg
     9601 ggcggctaag cgcgcggcgc ccgtgaagtt ttcgcgcgga gcgtttatga tgtcggcgtc
     9661 ggagggtttt tggatgaaga cctcgttggt gacgaaagcg gcgctggctt cagtgctcct
     9721 catcggcttg gcgctatcgg cgctggcctc gcccgcctac cgcgcccgct ggcgcgccgc
     9781 cacggagcag gagctgaggc gcgtcatccc cgcgcgggcg cccgtcgtca aggagaacat
     9841 agagacggag ttccgcacgg cctcgggcgc gaccgacggg cgcgggcgct acatcgcggg
     9901 cgtcgtgatg atcacggccg gctactcggc cgaggggaag tactcgcact tcttcgtcac
     9961 gcaggtggcg ctgcgggccg gcgacgttga cttgccgccc ggccagtacg tcttcggcta
    10021 caggcgcacg ggcgacgaca cgattcaggt gagcttttac cgcgcctcgt cgggcgagcc
    10081 cgtcggcgag gcggccgcgc agcggagccg caggggccac gccgtccgct cgctcctcgt
    10141 ctcgccgccc gcggccggcg gcaagggctt catacagatc ggccgcttct tgctcgacta
    10201 cagggtcgcg ggctaagagc ctgccgcgtc gaactaaagt tcgacgcccg cccctgccct
    10261 ttagcccatg acacgccgcg ccccgctgtg tggtaatgcg ccggtcacgc ccatcttgcc
    10321 cgaaaagctg aaagcccttg cggcccgccg tcttatgaag agaaccctac tcgcccacgc
    10381 ggccgcgctc gccgtatgcg cggccctctc gctcgcgcac gcagcggcgg cgcagcagct
    10441 cgcctcctcg tcgctgcgcg gctcggtcgt tgacccgaac ggcgccgtca tccccggcgc
    10501 gaagataaag gccgcgcaga gggagacggg cgccgagcgc acgacgacca cgaacgacga
    10561 ggggcagttc gtcatccccg gcctgcccgt cggccgctac gacgtgaccg ccgagcacgt
    10621 gggcttcaag acggccacgg tcaaggacgt gctgctgcaa gtcgggcaga gcttcacgct
    10681 cgacataagg ctcgaggtcg gcagcatagg cattatcatt gacggcgacc tgccgccctc
    10741 gcagcccatc aacacttact cggccgtggt cgagaacgta atcagcgacc aggagatagc
    10801 ggcgctcccc ttgaacggcc gcaacttcct ggagcttgcg ctgctcacgc ccggcaacgc
    10861 gcccgcgccg aacttcgacc cgaccaagac caacacgctc gtcatctcct cggccgggca
    10921 gttcggccgc ggcggcagcg tcacggttga cggcgccgac aacaacgacg acgtcgtggg
    10981 cggcgccgtg cagaacatct cgcaggacgc cgtgcaggag tttcaggtcg ccacgaaccg
    11041 cttcgacgcg cggctcggcc gcacgggctc ggcggtcatc aacgtcgtga cgaaaggggg
    11101 gacgaacgag acgcacggct cggcctcggc cttcttccgc gggagcctct tccaagcgct
    11161 gcccgcgacc ttcgaccgct cgacgggcga ggagccgccc ttcgaccgcg agcagtactc
    11221 cttcacgctc ggcggccccg ttaagcgtga cagggcgtgg tacttcggct cgttcgagta
    11281 ccgcaatcag gacggcgccg tgctcgtcgg cacgcgcgac ttagcgacgc gctccatccg
    11341 ccgcggcttc gccgacgcgc cgctcgacga cctgctcggc accacgcgct ttgactggaa
    11401 cgcctcggag tacgacaggc tgacgttgcg ctactcgatt cagcgcgagg aggggacggc
    11461 cgcgagcacg ctcatacgct ccatcggctc ggcctcgcag cggcagacct cgcgcaacca
    11521 cacgcattcc ttcgtcacga actacacgcg cctgctatcg ccccggcacg tcaacgaggc
    11581 gcgcttcagc tactcgacct tcatcaaccg cacgacgccc gtgacggcgg ggccgcagct
    11641 caccttcccg agcattcagg acggcgcgtc cttccgcgtc ccgcagcaga cccgtcagaa
    11701 gcgcctgcag ttcgccgaca cgctctcgat ggcgcgcggc aaccacgccc tcgccttcgg
    11761 cggcgagttc cagcgcgtgc tctcggactt cgacctcggc gtcttccgcg agggccgaat
    11821 tgagctgata gaggacttcc ccgacttcga ccgcaacggc gacggccgca ccgacgacaa
    11881 cgacctcctc ttcgccgtca cgctccgcag cgccttcccc gaccgcccgc tcgtcatacc
    11941 cggcgccgac aacaactact tcgccgcctt cgtgcaggac gactggcgcg tgtcgccgcg
    12001 gctcaccctg aacctcggcc tgcgctacga gattgacacc gacgttaaga acgtcagccg
    12061 cttcgacgaa atcaacccgc tcgtccggcc gttcctcagg ggcgagcggc gcgccgaccg
    12121 caacaacttc gcgccgcgcg tcggcttcaa ctggtcaacc tctagcggcc gcaccagcgt
    12181 ccacggcggc tacggcatct attacgaccg cgtaacgctc gaagtgcagt ctttggagcg
    12241 cggcctggac gggcgcgcgc tccccatcga ggtgcgcgcc ggaaacctct tcttcatccc
    12301 gccgccctgc ctcttcaacc ccgcgtgcgg ccagttccct ccgccggccc cgacgctcgc
    12361 caaccccttc gcgggcttcc tgctgccggg cgcaggcgcg ggcggcatca acatcattga
    12421 caaccgcctg caaaacccga tggtgcagca gacgaacctc ggcgttcagc acgagttctc
    12481 gcgcggctac ctggtgcgcg cggactacct gcacaacttc ggcacgcact tcatcatcgg
    12541 ccgcaccatc ggctcggtct tcaaccccgt cgtgggcggc cccgacctcg tcaagaacat
    12601 cgagtcgagc gtaaagacga agtacgacgg gctgctcctg agcttcgagc gtcgcttctc
    12661 cggtcgctac ggcttccgcg cctcctacac actgtccaaa gccttcaact acgccaacga
    12721 cgaccagatc cccttctcga acggccccgt caaccccgag aaccttcaac tagagtacgg
    12781 ccccacgccg aacgaccagc gccatcgctt cgtcttctcc ggcctcttcg acgcgccgct
    12841 cggcctccgg ctcgcgccca tctggactgt ggcctcgggc gtcccgatgg acatactgct
    12901 gcccgacggc agcttccgca tacccacgct ccagcgcaac gcgggcgggc gcctcttccg
    12961 aacgggcgcg gaactgaacg agttcatacg gcggataaac gcggcgggcg gcgtgccggg
    13021 cgtggggctg cttccgctcg tctcggacga ggcgcgcttg agcgactctt tcaactcgct
    13081 cgacctgcga ctggcgcgcc ccttcgcttt cggcgagcgc ttgaggcttg agcccatcgc
    13141 cgaagtcttc aacctcttca acgtgacgaa cgtgctcggc gtctctaacg tcaactactc
    13201 cggcttctcg aacgtgctcg ctcgggacag caacgaccct tccgaccccg gcttcctccg
    13261 ctcgtctagc ttcgggcggc ccgtcaccac ggccggcggc gtcttcggct ccggcggccc
    13321 ccgcgccttc cagttcgccg tccgcctgac gttttaagaa aggaatagcc acagagccgc
    13381 agggatttag aaatttcaaa tctcaaattt gaaattttcc tctgtgcctc tgtggctatt
    13441 cccttcccca accctttcga gtcaggctcc agtaaagcag agcgccggac gcggcggccg
    13501 aggccgtgaa gagcgcggcg cggccccacg tgccgaagat cacttcgccc gtggcgaaga
    13561 gcacggaata gacgagcgcg acgccgagcg cccagttcag gaagttcggc gcgaggcttt
    13621 cgcgccgccc gccgcggcca gcgtcgccgg ccacggggcg ccagcccggc ccggcgggcc
    13681 gcgccaggcg gtagaagctt tcgagcttct cccgcggctc gggccgcgtc gcaaaagtcg
    13741 ccgcgagcca gaccagagtc gtcgcgccga cggtcgtcag tatcgtgaga gcgaacccgc
    13801 gcggggccga ggcgtcgaag gcgtcgaagt agcgtagccc gagcgagacg gcgagcgccg
    13861 ccgccatcgc cgagatttca gaccaggcgt tcaccctcca ccagtaccag cggagtatat
    13921 agacgagccc cgtccccgcg ccgagcgaca ttatcaactc ccacccgccc gtgatgcggt
    13981 tcatgtagta ggtgacggcg accgagagca gcaccgtcag gagcgtcgcg gcccgcgcgg
    14041 ccagaacgta gtggcgctcg ctcgcccctt tgcgcacgaa gcggcggtag aagtcgttga
    14101 ccaggtagct cgagccccag ttcatctgcg tcgagacggt gctcatgtag gcggcggcga
    14161 acgacgcgag cagcagtccc cgccagccca cgggcagaaa gtccgtcatc accctcacgt
    14221 agccgaaggc cgcgtcgggc tgccccgtct cggggttgac ggtcgtccca gccgggtaga
    14281 gcacgagcga gcagagggcg acgagtatcc acggccacgg cctgagtgcg tagtgcgcga
    14341 cgttgaacca gagggtcgcc agtagcccgt gccgctcgtc cttcgccgag aagatgcgct
    14401 gcgcgacgta gccgccgccg cccggctcgg agcccgggta ccatgacgcc caccagttca
    14461 cgcaaaggta ggcggcgagc gtcacggcgg gcagcatcca cggctccgta ccgtcgctcc
    14521 agaggctcac ggcgtcgggg ccgaacggcc cgccgccgcc cgaaggcacg gcgccggcca
    14581 gtctttcttt gagcgcgccg aggccgccgg ccgcgcgcac ggcgaagacg gcgagcgcca
    14641 cagacccagc catcgccacg acgaactgca ccgcgtacgt caccaccacg ccccagaagc
    14701 ccgacagtat cgaatagaag aaagtgatcc ccaggcagag cgcgagcgcc tgccacttcg
    14761 ccagccccag cgtgccgctc aagaccttcg ccatgccgag gttgacccag cccattatga
    14821 tcaggttaat cggcagcccc aggtagagcg cgcggaagcc gcgcaggaat gcggccggcc
    14881 gccccgagta acgaagctcg acgaactcca cgtccgtcat cacctccgcg cgccgccaca
    14941 gccgcgcgaa gaagaagacg gtcagcatcc cgctcgccag cattgaccac cagagccagt
    15001 tgcccgccac gccgttgcgc gccaccatct ctgtgactgc gagcggcgtg tcggccgcga
    15061 acgtcgtcgc caccatcgaa gtccccgcca gccaccacgg catcgagcgg tcggagagga
    15121 aaaactcctc cgtcgagcgc ccggcgcgcc gcgcgtagta gagccccacg gcgagcgaca
    15181 gcgcgaagta cgccgcgatg atgagccagt cgagcagggt cagtttcatg ctagggactt
    15241 ccgacggcgg cgagcacgtg ctcgcgcgct tcggaggcga gcgcgcgcgc ccgcgcctcg
    15301 gtctccgcct cggccacgat gcgaagtatc ggctcggtgt tcgagccccg caccagcagc
    15361 caacccgcgc ccggcaccgt gaccttcacg ccgtcgcgcg cgtcaacggg gaggcccgcg
    15421 taggccgcgc gcaccgcgcg gagcgcccgc ccgatgcggt ctgagcggca cgcgagcttc
    15481 tccttccaga tgaaggaggg cggaagcccc gagaccagtt cggagaccgc ccgtcccgtc
    15541 tccgcgagca ggtgcaggac gagcgccatg ccgaccaggc tgtcgcgcgc gaagttgacg
    15601 cgcgggtaga tgacgcctcc gttgccctcg ccgccgatga cggcgccgac gcgccgcatc
    15661 tcctcagtga cgttcgcctc gcctatcttc gagcgataga cggggcagcc gaacttgccc
    15721 gcgacgtaat cgagcgtcgt cgtcgtcgag aggttcgcca cgaccgcgcc gggctcccgc
    15781 gcgagcacgc gcatcgccgc gagcacgagc gtcagttcct cacccacggg ctcgccgcgc
    15841 tcggagacca cggccaggcg gtctgcgtcc atgtcctgag cgaagccaac gtcggcgccc
    15901 gcctcgcgca cggcggcgca cagcgcgccc agattctcgg gcagcggctc ggcgccgcgc
    15961 gggaacgagc cgtcgggcgt gacgttcagg gccaagacct ccgcgccgag cgcttcgagc
    16021 agacgcggcg cgacgaccga cccggccccg ttgcacgaat caaccgccgc gcgcaggcgg
    16081 cgcccgccgg ccggcagggg gcctacggcg tcgagcacgg cccgaacgtg ggcgtcgagc
    16141 gcgcccgcgt cgtgctcgac gccgcgcatc tccgcgcccg cgaccttcac gtactcgccc
    16201 tgatggtaga tgtctaagag ctgccgggcc tgcgcgcccg acaggaagag cccttcggag
    16261 tttatgaact tgagtgcgtt ccactccgcg gggttgtggc tggccgtgat ggctatgccg
    16321 ccgcgcgccc ggcgctcgcg cacgaggagc tgcacggtcg gcacggggca gacgccgagg
    16381 tcaacgacgc ggcaacccga cgatagcagc cccgagacgg ccgcctgcct gaccatctcg
    16441 cccgaggggc gcgtgtcgcg ccccatcact atcatccccg gcccagtgta cgtgccgaac
    16501 gcctgcgcga agcgcacgag cagcgtcggc gtgagcgact cgcccacgac gccgcgcacg
    16561 cccgagatgc ttatcttcag tgtcggtatc gcgcgcatcg cccgcccccg gctcacctcc
    16621 ccagacggtc gcgcgcccag tcgagcagct cgcgcgcccg cgcctccgtc ccggcctccg
    16681 cgatgacgcg cacgagcgac tcggtccccg acacgcgcac gtgcgcccag ccgtccggcc
    16741 acgccaccct tatcccgtcc gtctggtcgt aggcgacgcc ctcacgctcg acggcgtcgt
    16801 gcagcctctg caggagcgag aagattcgat tcggctcggc cgctatgtcg tgcttgatca
    16861 ttgcgggccg cgggagccgc gccgcaagct ccgagacgcg ctcgcccgag agcgccacgt
    16921 gctcgagtat gagcccggcg gcggccgccg cgtcgtgcgt gagctgcacg cgcgggacta
    16981 cgacgccgcc gctcccctcg ccgccgacga ctgcgcccgt ttcggccata gcctcggaga
    17041 tgaaagcctg gccgacgggc gtccgcacca ccgcggcgcc gtggcgcgcg gcgattaaat
    17101 ctacggcccc gctcgtcgag acgtttgtga cgaccgtagc gccccggccg ccgcgccgcg
    17161 ccagctctat ctcggccgcg gcggcgagcg tcgcctcttc gggcagaacc tcgccgccgt
    17221 ctgtgacaac cccgagccgc tcgccgtcgg cgtcgtgcgc gaagcctacg tccgcgcggc
    17281 ccgccctgac gaccgcgcgc agttgcccca tcgtccgcgg cctcggctcg ggcg
//
LOCUS       DASPKR010000376         2110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1088123, whole genome shotgun sequence.
ACCESSION   DASPKR010000376 DASPKR010000000
VERSION     DASPKR010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1088123"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..308
                     /gene="rpsK"
                     /locus_tag="VD968_10250"
     CDS             <1..308
                     /gene="rpsK"
                     /locus_tag="VD968_10250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HYE14809.1"
                     /translation="NTLISITDTEGNLVAQSSSGARGFRGSRKGTPFAAQQAAYEAAN
                     KAKEAGMQQCEVRVKGPGGGRESAIRAINSAGIRVTLIRDTTPIPHNGCRPPKRRRV"
     gene            477..1118
                     /gene="rpsD"
                     /locus_tag="VD968_10255"
     CDS             477..1118
                     /gene="rpsD"
                     /locus_tag="VD968_10255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HYE14810.1"
                     /translation="MARYRSAVCRLCRREGAKLFLKGDRCYKPSCPIEKRGTQPPGQH
                     GNSLRRGKALVGYGQQLREKQKVKRIYFILEGQFRNYFERAARMKGITGENLLTLLER
                     RLDNAVYRAGFATSRRQARQLVNHGHVEVNGRKVDIPSFQVKPGDTVSIREASRRNPH
                     IEGAWQTAAGRGRPNWIAPADGAEMAARVLTQPVRGDIDRSINEQLIVELYSK"
     gene            1229..>2110
                     /locus_tag="VD968_10260"
     CDS             1229..>2110
                     /locus_tag="VD968_10260"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF003513.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HYE14811.1"
                     /translation="MAMDQHNLWTGFQMPRRLAVEGDTLTDRYGRFSAQPFERGFGTT
                     IGNSLRRALLSSIEGAAITAVKIEGVEHEFSSIRGVVEDATDVILNLKQIPFKLHGTE
                     PKTLTIRRDGAGEVTSADIEHDADVEVLDNEVYIATVSEGGSLNIEMRLKRGRGYTPA
                     ERNFDEDLSLGYIPIDSVHTPVKKVNYSVEAARLGQNTEFDKLTIEVWTDGSVRPDDA
                     IGLAAKLIKDHMQIFINFEEDTDEYVYQNIERPPLPRNDVLDRSVDELELSVRSYNCL
                     KNANIRSIRDLVQRSERE"
BASE COUNT          421 a          712 c          659 g          318 t
ORIGIN      
        1 acaacacgct gatctcgatc accgacaccg aggggaatct ggtggcgcag tcttcgtcgg
       61 gcgcgcgcgg cttccgcggc tcgcgcaagg gcacgccgtt cgccgcgcag caggccgcct
      121 acgaggccgc caacaaggcg aaggaggccg ggatgcagca atgcgaggtg cgcgtcaagg
      181 ggccgggcgg cgggcgcgag tccgcgatcc gcgccatcaa cagcgccggc atccgcgtca
      241 cgctcatccg cgacacgacg cccatccccc acaacggctg ccgcccgccg aagcggcgca
      301 gagtttaaga gcaacgatga atgcggaatg acgaatgatg agtggaagcc ttcgaggctc
      361 tttatattca tcattcatca ctcatcattc cgcattttaa cctaaaggat gaagggccgc
      421 gcacgggcgg tctgtaaact tttccgtctg acgtttagac cggaggcaaa aaagaagtgg
      481 ctaggtatag gagtgcggtg tgccgtctgt gccgccgcga aggcgcgaag ttattcctga
      541 agggcgaccg ctgctacaag ccgtcctgcc cgattgagaa gcgcggcacg cagccgcccg
      601 gacagcacgg caatagcttg cgccgtggca aggcgctcgt cggctacggg cagcagctcc
      661 gcgagaagca gaaggtcaag aggatttact tcatcctcga gggccagttc cgcaactact
      721 tcgagcgcgc ggcccgcatg aagggcatca cgggcgagaa ccttttgacg ctcctcgagc
      781 gcaggctcga caacgccgtc tatcgcgcgg gctttgccac ttcgcgcagg caggcgcgcc
      841 agctcgtcaa ccacgggcac gtcgaggtca acggccgcaa ggtggacata cccagcttcc
      901 aggtgaagcc gggcgacacc gtgagcattc gcgaggcgag ccgccgcaac ccgcacatag
      961 agggcgcgtg gcagacggcc gctggccgcg ggcgcccgaa ctggatcgcg ccggccgacg
     1021 gcgccgagat ggccgcccgc gtcttgacgc agcccgtccg cggcgacatt gaccgctcga
     1081 taaacgagca gctcatcgtc gagctctaca gcaagtaaga acagcaaggc gcggcgcgcg
     1141 ctcccccttc tcgatgcccc ttcggcgggc ggggggcgtg cgtcgcgccc cgtcattgac
     1201 gcctttttag agggacaggt tttcaactat ggcaatggat cagcacaacc tctggacagg
     1261 gtttcagatg ccgcgccgcc tcgccgtcga gggcgacacg ctcaccgacc gctacggccg
     1321 cttctccgcc cagccgttcg agcgcggctt cggcacgacc atcggcaact ccttgcgccg
     1381 cgcgctgctc tcgtccatcg agggcgcggc catcaccgcc gtcaagatag agggcgtcga
     1441 gcacgagttc tcctcgatac gcggcgtcgt cgaggacgcg accgacgtaa ttcttaacct
     1501 caagcagata cccttcaagc tccacggcac cgagcccaag accctgacca tccggcgcga
     1561 cggcgccggc gaggtcacct ccgccgacat cgagcacgac gccgacgtgg aggtgctcga
     1621 caacgaggtc tatatcgcga cggtcagcga gggcggctcg ctcaacatcg agatgcgcct
     1681 aaagcgcggc cgcggctaca cgcccgccga gcgcaacttc gacgaggact tgtcgctcgg
     1741 ctacatcccg attgactccg tccacacgcc cgtcaagaag gtcaactact cggtcgaggc
     1801 cgcccgcctc ggccagaaca ccgagttcga caagctcacg attgaagtct ggacggacgg
     1861 cagcgtgcgc cccgacgacg ccatcgggct ggccgcgaag ctgatcaagg atcacatgca
     1921 gatcttcatc aacttcgagg aggacacgga cgagtacgtc taccagaaca tcgagcggcc
     1981 gccgctgccc aggaacgacg tgctcgaccg ctcggtggac gagctggagc tctcggtccg
     2041 ctcctacaat tgcctgaaga acgccaacat ccgctcgatc cgcgacctcg tgcagcgctc
     2101 cgagcgcgag
//
LOCUS       DASPKR010000377         3713 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1476518, whole genome shotgun sequence.
ACCESSION   DASPKR010000377 DASPKR010000000
VERSION     DASPKR010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3713)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3713
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1476518"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            310..1542
                     /locus_tag="VD968_10265"
     CDS             310..1542
                     /locus_tag="VD968_10265"
                     /inference="COORDINATES: protein motif:HMM:NF024925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HYE14812.1"
                     /translation="MGDTPSPVNVVCVASHFKGEEFLRECKRSGAWVELVTRRRTLGE
                     AWPRESLDALHALPDDAGAEVVMHVVGQLARTRKLHALAALEEFDVITAALVREHLRL
                     PGMTSTVARRFRDKLAMRAEADAAGIRVPDFVHALNYQEVGGFMERVPPPWVLKPRSD
                     VSSSGIRKLEEPEQVWRAIEALDAREPLQDRAPYYLLEKYVAGEVFHVDSLVEDGEVI
                     FSGASRYGRPPLDVAHGGVFTSRTVEYDSPEHEELTGMNARLLKALGLDRGAAHAEFI
                     RGSEDGELYFLEVAARVGGANIAETLEAATGVNLWREWARLEVAHARGGRLGRPETRR
                     DYAGIALSLARQERPDTSAYDDPEIVYRVDKAYHVGLIVRSGSPERVRELIEQYARRF
                     AVDFSAYVPPPERRGINL"
     gene            1577..3523
                     /locus_tag="VD968_10270"
     CDS             1577..3523
                     /locus_tag="VD968_10270"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HYE14813.1"
                     /translation="MGEVKVAPYGSWESPITSDLIVSATVGLGQTALDGGDTYWIELR
                     PSEGGRNCIVRRAADGSVSDITPAGFNARTRVHEYGGGDFVVREGTVYFSNFADQRLY
                     EQRPGEAPRPLTPEKSYRYSDCVVDARRGRLLAVREDHTVEGREAVNAVVALRADGSV
                     NEDGGAVIVGGNDFYSSPRLSPDGRRLAWLTWNHPNMPWDGCELWVGELNDDGTLGES
                     SLVAGGEEESVFQPEWSPEGVLYFVSDRSNWWNIYRVAADGTIERAHEEREAEFATPQ
                     WLFAMSTYSFESAERIVCAYNERGTWRLARLGTRDGRLEPIETPYTEISYVRAAPGRV
                     VFRGGSPTERLAVVEVDLASGRVSALKRASEVALDEGYISTPRAVEFPTEGGVTAHAF
                     FYAPRNKDFKAPEGERPPLLVKCHGGPTAATTTTLRLETQYWTSRGVAVLDVNYGGST
                     GYGREYRQRLNGQWGVVDVDDCVNGAKYLVGRGEVDGARCVITGGSAGGYTTLNALTF
                     RDTFKAGASHFGISDLTVFVGDTHKFESRYLDRLIGPYPERADLYFERSSINFTDRLS
                     CPVIFFQGLEDKVVPPNQAELMVEALRRKRLPVAYVAFEGEQHGFRRAENIKRALDGE
                     LYFYSRVFGFEMADKVEPVEIENL"
BASE COUNT          621 a         1195 c         1311 g          586 t
ORIGIN      
        1 tcggtgataa aggggctgcc ggacgggctg acggagaggg ctatagcggc ggcgcggcag
       61 atacggttca cgccggcgca gaaggacggg agggtggtgt cgcagtacat agtgctcgag
      121 tacaacttca acatatactg aacggcggcg cgagcatcgc gcgcccaaca tcaaaggcgg
      181 ctgtcccacc caagcgggct cggggctgcc gcctttttac gctcgcgggc gtgaaggttg
      241 cgcggccgcc gtgttataaa ctccaaaaag ttagtcggag gtcggaaagt cagcgaaggg
      301 gaagccagct tgggcgacac gccgtctccc gtcaacgtgg tctgcgtagc cagccacttt
      361 aagggtgagg agttcctgcg cgagtgcaag cgctcgggcg cctgggtgga gcttgtgacg
      421 cggcgcagga ctctgggcga ggcttggccg cgcgagtcgc tcgacgcgct gcacgcgctg
      481 cccgacgacg cgggggccga ggtcgtcatg cacgtcgtcg gccagctagc gcgaacgcga
      541 aagctgcacg cgctcgcggc cctcgaagag ttcgacgtaa tcaccgccgc cctcgtgcgc
      601 gagcacctgc gcctgccggg gatgacgagc accgtggccc ggcgcttccg cgacaagctc
      661 gccatgcgcg ccgaggccga cgccgccggc atccgcgtcc ccgacttcgt ccacgcgctc
      721 aactaccagg aggtaggcgg gttcatggag cgcgtgcccc cgccgtgggt cttgaaaccg
      781 cgctccgacg tttcgtcttc ggggataagg aagttggaag agcccgagca ggtctggcgg
      841 gccatcgagg cgctcgacgc gcgcgagccc ttgcaggaca gggcgcctta ctaccttctc
      901 gaaaagtacg tggccggcga agtcttccac gttgactcgc tcgtagagga cggcgaggtt
      961 atcttttccg gcgcgagccg ctacgggcgc ccgcccttag acgttgcgca cggcggcgtc
     1021 ttcacctcgc gcacggtcga gtacgattcg cccgagcacg aagagctgac gggcatgaac
     1081 gcgcggctgc tcaaagcgct cggcctcgac cgcggcgccg cgcacgccga gttcatacgc
     1141 gggtccgagg acggcgagct ctacttcctc gaagtcgcgg cgcgcgtcgg cggcgcgaac
     1201 atcgccgaga ctctggaggc cgcgacgggc gtcaacctct ggcgcgagtg ggcccggctg
     1261 gaagttgcgc acgcgcgggg cgggcgtctg ggcaggccgg agacgaggcg cgactacgcc
     1321 gggatagcgc tctcgctcgc gcggcaggag cggcccgaca cctccgccta cgacgacccc
     1381 gagatagtct atcgcgttga caaggcgtac cacgtcggcc tcatcgtgcg gtcgggatcg
     1441 ccagagcgcg tccgcgagct gatcgaacag tacgcgcggc gcttcgccgt agacttcagc
     1501 gcctacgtgc cgccgccgga gcggcgcggc atcaaccttt gaagcggagt gctatttaat
     1561 tctcgcggag gaacagatgg gtgaagtgaa ggtcgcgcct tacggctcgt gggagtcgcc
     1621 gataacctca gacctcatcg tgtcggcgac ggtcgggctc gggcagaccg cgctcgacgg
     1681 cggggacacg tactggatag agcttcgtcc ctcggagggc gggcgcaact gcatcgtgcg
     1741 gcgcgcggcc gacgggagcg tctcggacat aacgcccgca ggcttcaacg cgcgcacgcg
     1801 cgtccacgag tacggcggcg gcgacttcgt cgtgcgcgaa ggcacggtct atttctcgaa
     1861 cttcgccgac cagcgtcttt acgagcagag gccgggcgag gcgccccggc ccctgacgcc
     1921 cgagaagagt taccgctaca gcgactgcgt ggttgatgcg cggcgcggcc gcctcctcgc
     1981 agtgcgcgaa gaccacacgg tcgaggggcg cgaggcagtg aacgcggttg tcgccctgcg
     2041 cgcggacggc tcggttaatg aggacggcgg cgccgtcata gtcggcggca acgacttcta
     2101 ctcctcgccg cggctgagcc cggacggccg aaggctcgcg tggctcacgt ggaaccaccc
     2161 gaacatgcct tgggacggct gcgagctttg ggtgggcgag cttaacgacg acggcacgct
     2221 cggcgagtcg agcttggtgg cgggcggcga ggaagagtct gtcttccagc ccgagtggtc
     2281 gcccgagggc gtgctctact tcgtctccga ccgcagcaac tggtggaaca tctatcgcgt
     2341 cgctgccgac ggcactatcg agcgcgcgca cgaggagagg gaggcggagt tcgccacgcc
     2401 gcagtggctc ttcgcaatgt caacctactc gttcgagtcg gccgagcgga tcgtgtgcgc
     2461 gtacaacgag cgcggcacgt ggcggctcgc tcggctcggc acgcgcgacg ggagattaga
     2521 gcccatcgag acgccctaca ccgaaatctc atacgtgcgg gccgcgccgg gccgcgtcgt
     2581 gttccggggc ggttcgccga ccgagcggct ggcggtcgtc gaagtggact tggcgtcggg
     2641 ccgggtgagc gcgctcaagc gtgcgagcga ggtggcgctg gacgagggct acatctcgac
     2701 gccgcgcgcc gtcgagttcc cgaccgaggg gggggtgacg gcgcacgcct tcttctacgc
     2761 gccgcgcaac aaggacttta aggcccccga gggcgagcgc ccgccgctgt tggtgaagtg
     2821 ccacggcggc ccgacggccg cgacgacgac gacgctccgg ctcgaaaccc aatactggac
     2881 gagccgcggc gtcgccgtct tggacgtgaa ctacggaggg agcaccggct acgggcggga
     2941 gtaccggcag cgcctgaacg gtcagtgggg cgtcgttgac gttgacgact gcgtgaacgg
     3001 cgcgaagtat ttggtagggc gcggcgaggt tgacggcgcg cgctgcgtca tcacgggcgg
     3061 cagcgcgggc gggtacacga ccctgaacgc gctcaccttc cgcgacacgt tcaaggccgg
     3121 cgcgagccac ttcggcataa gcgacctgac cgtcttcgtc ggcgacacgc acaagttcga
     3181 gtcgcgctac ctcgaccgcc tgataggccc ttaccccgag cgcgcagacc tgtacttcga
     3241 gcgctcctcg ataaatttca cggacaggct ctcctgcccc gtcatcttct tccaggggct
     3301 cgaagacaag gtcgtgccgc cgaaccaggc cgagctgatg gtcgaggctc tcaggcggaa
     3361 gaggctgccc gtggcctacg tcgccttcga gggcgagcag cacggcttcc gccgcgccga
     3421 gaacatcaag cgcgcgctcg acggcgagct gtacttttac tcacgcgtct tcggcttcga
     3481 gatggccgac aaggtggagc ccgtcgagat agaaaacctc tgaagtcacc gaacgcaaca
     3541 aagagcgccg gccgtctccg ttgagagacg gccggcgctc ttttcatcta actgattcgg
     3601 tctcggcttt accggggccg caggttgcga aggttccgca tggggcgctg cttgcgcttg
     3661 ttgcgcttgc gcgcgagcgc cgacttcagc ttggccttct gcccgcgaga cat
//
LOCUS       DASPKR010000378        10731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1863672, whole genome shotgun sequence.
ACCESSION   DASPKR010000378 DASPKR010000000
VERSION     DASPKR010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10731)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10731
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1863672"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..342)
                     /locus_tag="VD968_10275"
     CDS             complement(<1..342)
                     /locus_tag="VD968_10275"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HYE14814.1"
                     /translation="MRILVTGGAGFIGSHLCERLLAEGHEVLCLDNFFTGRRENVFHL
                     MDSKRFELVRHDIIEPVLLEVEQIYNLACPASPVHYQFNPVKTVKTNVMGTINMLGLA
                     KRVRARILQAST"
     gene            complement(377..1969)
                     /locus_tag="VD968_10280"
     CDS             complement(377..1969)
                     /locus_tag="VD968_10280"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HYE14815.1"
                     /translation="MTTSTSDERLDAQQTPHADVATPPPAAPGALVPPAPSRPGPPAP
                     RRAASGAEPPRTIWGRFIILMLCTAVVTTTLAFGTVHAWSLAAFQLSAAVVLALWAMD
                     AWRSRVLRASKNFLQLPLLGLAVVGLVQLLPLGAGAGVEGLGASPIEPPRTLSFDPNT
                     TRFVVMQVLGLLVYFAAALAFIDSPRRLRTVVRFVIIFGFVLAVYGLMQHFLSPSAIF
                     WVRKPEQAEPFGPYINRHHFAGYMELVLALPLGLLFAGAVDRDRVLLYAFASAMMCIA
                     LVMTNSRGGMLSMLAEVSFLVVVAAAVRRKGGGEERLEGAARVRAAAKRVALGFAMVA
                     AVFAGVLYFGGEESLSRLVGSVNTADPTTGRAHFWRGALQMVKDRPALGVGLGGFSAA
                     YPRYDTSNGTYRLEQAHNDYLQILTDAGVVGGALGLLFLAGLFRMALSRVQSRDKFRR
                     GVALGALAGCVGALVHSFFDFTLHATANALLFLLLAALATANGRLEKRESQRRRRRRR
                     PGEGQTEPREGAEGEESAAAAA"
     gene            complement(1914..3224)
                     /locus_tag="VD968_10285"
     CDS             complement(1914..3224)
                     /locus_tag="VD968_10285"
                     /inference="COORDINATES: protein motif:HMM:NF014116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate binding domain-containing protein"
                     /protein_id="HYE14816.1"
                     /translation="MAEQLVLINVRPVWLRALLALPVAAALWGAWHGVRWGAGATMAE
                     TARDLETAAAAERLAPRDPQTHLRLARLRRVSFLPEDLPKALEEYERAAALAPNDYLI
                     WMEMGRARGAAGDHEGGVRALRRAVELAPSYAQPRWHLGNILLRAGRADEAFAELRRA
                     ADADPALRPQVFNLAWQVYDRNISRVVAAVSETPGARAQLAVVLVGRGQLENALAVWS
                     SLTPEQRREHGGAGDAIARALYDRRQYRQALAVLGEAGATGGAEAEKVSNGGFESDIA
                     PAGRRLFDWQVTPPPAGSRVAIDPRTARGGSRSLLVSFSSPAHVDFKHVAQVVAVAPS
                     TRYRLSFFVRAQEVETAATLVVVAGDASADDSVLAASSTAPTGTTEWQEVSFEFTTGP
                     RTEAVSLRLVRAGCAEGACPAYGKIWYDDFDLRRAAGRAADAAR"
     gene            complement(3304..5103)
                     /locus_tag="VD968_10290"
     CDS             complement(3304..5103)
                     /locus_tag="VD968_10290"
                     /inference="COORDINATES: protein motif:HMM:NF025104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14817.1"
                     /translation="MPFDSSHLVPVAVSFALALVLTPAVRAAARRRGWVAKPKADRWH
                     SKPTAMMGGVAIFASVAVTYLLFVPHTRDGWVVMGASAFLFVVGLVDDRLHIKPYQKL
                     IGQVLGASLVVYFGVVLPWGWAASVGMALTIFWLIGITNAINLLDNMDGLAAGVSAIA
                     AVFIAANLAINGQVTEALMLATFAAALVGFLFYNTNPASIFMGDCGSMFVGFFLASAA
                     LLSASGGRGRSFIVVVAVPVLILFIPIFDTTLVTIMRKLSGRAASQGGRDHASHRLVA
                     LGLSERRAVWMLYAFAAGSGVLAMLVREFEYHAGFAMILGFAVVLTLVGVYLAGVKVY
                     DEAEVQAAREKPIVSFLVDLSYKRRIFEVLLDVVLIILAYYAAYVLHFGAGWRPGVWQ
                     LFLSTVPVLIFVKMTALLAAGVYRGLWRYISVDNLIVYAKAVVGGSVASMLVLLFAFR
                     FQGFSRAVFVLDAMVFFLMLAGSRVAFRLFRRMLPSPGEGGRRVLIYGAGDAGELLLR
                     EMRNNLQLQYTPVGFLDDDPLKKGRVIHGLRVFGGNGNLRRVCEEQQVEEVLISSSKI
                     DDEHVRRILRDCEEARITLKRMRIEIELVGHEF"
     gene            complement(5235..6209)
                     /locus_tag="VD968_10295"
     CDS             complement(5235..6209)
                     /locus_tag="VD968_10295"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HYE14818.1"
                     /translation="MRVLITGGAGFIGSHLSDAYLERGDEVFVIDDLSTGSIDNIAHL
                     RRHPRFHYTIDSVHNQPLLAELIDQCEVVFHLAAAVGVKLIVESPVRTIETNVKGTEA
                     VLSQANKKKKKVLVASTSEVYGLSNDVPFREDGNLVMGATTKGRWSYACSKAIDEFLA
                     LAYWREKKLPTIIVRLFNTVGPRQTGQYGMVIPTFVKQALAGRPITVYGDGSQTRCFG
                     YVKDVVGALVNLMAKDEAVGEVFNIGSNEEVSIMELARRVRELAGSKSEIVTVPYDEA
                     YEEGFEDMPRRVPDITKVNRLVGFRPTMSLDGILQSVIEYYSGRQGNS"
     gene            complement(6227..7558)
                     /locus_tag="VD968_10300"
     CDS             complement(6227..7558)
                     /locus_tag="VD968_10300"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE14819.1"
                     /translation="MKVVRIIARLNVGGPAKHVAWLEAGSRRLGVESVLVAGTVAPGE
                     GDMAYFAERLGVSRVALPEMSREISPKDLLTVWKLYRLFLRERPDIVHTHTAKAGTVG
                     RLAGLLYRWATPAALLGRPRPCRFVHTYHGHIFHSYYGPLKTRVFLTIERLLARIATD
                     RIVVISPQQLAEIHGQFRVGRPGQFAVIPLGLDTSEFDGWAERREHFRRELGAGDEEV
                     LVGIVGRLTEVKNHELFLESAALLKRKLEEPGAAAERARVRFVVIGDGHLRRGLEARA
                     RALGLSDDVIFTGLRDDPENFYPVLDIVALTSRNEGTPLTLIEAMANARAVAATAVGG
                     VVDLLGGLEEGALRRPRAWQVCERGVQVRPGDAEAFAQALLHLVGNAELRRQLGERGR
                     EFVARNYSVERLLGDVQALYAGLCGPAGEPAAARGAAAGGPEKISRAGGAP"
     gene            complement(7664..8422)
                     /locus_tag="VD968_10305"
     CDS             complement(7664..8422)
                     /locus_tag="VD968_10305"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HYE14820.1"
                     /translation="MKGIVLAGGLGSRLRPLTSVTNKHLLPVYDKPMIYYPIQALVNA
                     GIKDIMIVTGGNSAGDFLRLLKNGKDFGLKHLNYTYQEGEGGIADALRLCEDFSDGEP
                     VCVVLGDNIIERNICRAARAYRHQGGGAKILLKKVPDPQRFGVPELDGRRVLRIEEKP
                     KEPKSEYAVIGIYMYDAGVFDIIKTLKPSARGELEITDVNNAYIERDEMTWDELEGWW
                     TDAGTFESLLRASTLVAETGANKMEAERQVVSSQ"
     gene            complement(8467..9417)
                     /locus_tag="VD968_10310"
     CDS             complement(8467..9417)
                     /locus_tag="VD968_10310"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE14821.1"
                     /translation="MAATRAASAEEAAVVEAGGAYRWVPQDCPVCEAPPSRYVGRRGG
                     PAHRAGLGVECRIWRCATCGLVFPNPMPVPVGGVGQHYSMEADAYFHNHEGGKRLQGA
                     RDLMRHAARLTGGPGRVLDVGSGRGEVLVAAREQGWQAVGIEPSPSFAEYAARASGAE
                     IKGEPLERCGFGDGEFDAVILAAVLEHLYNPDETVREIARVLRPGGALFVDVPNEAGL
                     YFRLGNLYQRLRGRDWSVNLAPTFEPFHVFGFNQRALRLLLAKHGLRVAVFRVYGGEN
                     MLPDRPGLMGSLERAAARLVTAASDMGDLGTYIEAWAVKK"
     gene            complement(9450..>10731)
                     /locus_tag="VD968_10315"
     CDS             complement(9450..>10731)
                     /locus_tag="VD968_10315"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HYE14822.1"
                     /translation="EPGHTLTLTREGEVRTERYWHLDINSKIKVTEEEAGERAVELLR
                     EAVRVRLMSEVPLGAFLSGGVDSSAVVALMAEESSGPVKTFSIGFDEQDFSELHHARR
                     VAEFVGAEHHEFVVRPDAMEVLPKLVEHYGEPYADSSAIPTYYVARETRRHVTVALNG
                     DGGDECFAGYERYAAMRLSERYRKLPGPLREGVIRQAVSLLPSSELRRGRVRDLKRFL
                     RAASLPPVDRYLRWVSVLGPEAKQELYTEEFRRETEAADVRQWIAPWFARANGAGVVD
                     AALLADTMTYLPNDLLVKVDIASMAVSLEARSPFLDHHVIEFAASLPERLKLRRLTTK
                     YILKRTLKKLLPAENLSRGKMGFGVPVGHWFRGEMGPFLRENLLSEKFAGRGLLRPER
                     VRRMVEEHTEARADYTHQLWTLLMLELWFRRFID"
BASE COUNT         1738 a         3708 c         3663 g         1622 t
ORIGIN      
        1 ggtggaggcc tgtagtatgc gggcgcgcac gcgcttggcg aggccgagca tgtttatcgt
       61 gcccatcacg ttggtcttta cggtcttgac cgggttgaac tggtagtgga cgggcgaggc
      121 ggggcaggcg aggttataaa tctgctccac ctcgagcagc accggctcga tgatgtcgtg
      181 gcgcacgagc tcgaagcgct tcgagtccat caggtggaag acgttctcgc gcctgcccgt
      241 gaagaagttg tccaggcaca gaacctcgtg gccctcggcg aggagccttt cgcataggtg
      301 cgagcctatg aagcccgccc cgcccgtcac aagtatcctc atctctctcc ctaagccctt
      361 ctcacgcgcc cggcgctcac gcggcggcgg ccgcgctctc ttccccttcc gcgccctcgc
      421 gcggctccgt ttgaccttcg cccgggcgac ggcgccgccg ccggcgttgc gattcgcgct
      481 tctcgaggcg gccgttcgcg gtcgcgagcg cggcgaggag caggaatagg agcgcgttcg
      541 cagtcgcgtg cagcgtgaag tcgaagaagc tgtggacgag cgcgccgacg cagcctgcga
      601 gcgcgcccag cgcgactccc cgccggaact tgtcgcgcga ctgcacccgc gagagcgcca
      661 tgcggaacag cccggcgagg aacaggaggc ccagcgcgcc tccgaccacg ccggcgtcgg
      721 tcaggatttg caggtagtcg ttgtgcgcct gctcgagcct gtacgtgccg ttggaggtgt
      781 cgtagcgcgg gtaggccgcg ctgaagccgc cgagcccgac gccgagcgcg ggccggtctt
      841 tgaccatctg caaggcgccg cgccagaagt gcgcgcgccc cgtcgtcggg tcggccgtgt
      901 tgaccgagcc gacgaggcgg ctcaaagact cctcgccccc gaagtagagc acgccggcga
      961 agaccgccgc taccatcgcg aagccgagcg ccacgcgctt cgcggccgcc cgcacgcggg
     1021 ccgcgccttc gagccgctcc tcccccccgc ccttgcgtcg caccgccgcc gccacgacga
     1081 caaggaagga gacttcggcc agcatgctca gcatgccgcc gcgcgagttc gtcatcacga
     1141 gcgctatgca catcatcgcg ctcgcgaacg cgtagagcag cacgcggtcg cggtcaaccg
     1201 ctccggcgaa gaggagcccc agcgggagcg ctagcacgag ttccatgtag ccggcgaagt
     1261 ggtggcggtt gatgtagggt ccgaacggct cggcctgctc gggcttgcga acccagaaga
     1321 ttgcgctcgg gctcaggaaa tgctgcatca gcccgtaaac ggcgagcacg aagccgaaga
     1381 tgatgacgaa gcgcacgacc gtgcggagcc ttcgagggct gtcaatgaag gcgagcgccg
     1441 cggcgaagta cacgagcagg ccgagcacct gcatcacgac gaagcgcgtc gtgttggggt
     1501 cgaaggagag cgtgcgcggg ggctcgattg gcgaagcgcc cagcccctcg acgcccgcgc
     1561 cggcgccgag cgggagaagc tgcacgagcc cgacgacggc gagccccagg agcgggagct
     1621 gcaagaagtt cttgctcgcg cgcagcacgc gcgaccgcca ggcgtccata gcccagagcg
     1681 cgagcacgac ggcagcgctc aactggaagg cggcgagcga ccaggcgtgg acggtgccga
     1741 aggcgagcgt cgtcgtgacg accgccgtgc agagcatgag gattatgaag cggccccaga
     1801 tggtgcgcgg cggctcggcc ccggaggccg cgcggcgcgg cgcaggcggc cccggccgcg
     1861 agggcgcggg cggcacgagc gcccccggcg cggcgggcgg cggcgtggca acgtcagcgt
     1921 gcggcgtctg ctgcgcgtcc agccgctcgt cggaggtcga agtcgtcata ccagattttc
     1981 ccgtaggcgg ggcaggcgcc ctcggcgcag ccggcgcgca cgagccgcag cgagacggcc
     2041 tccgtgcgcg gccccgtcgt gaactcgaag gagacttcct gccattcggt cgtccccgtc
     2101 ggcgccgtgg aggacgcggc gagcaccgag tcgtcggctg aggcgtcgcc cgcgacgacg
     2161 acgagcgtgg ccgccgtctc gacctcttgc gcgcgcacga agaagctcag gcggtagcgc
     2221 gtcgagggcg cgactgcgac cacctgcgcg acgtgcttga agtcaacgtg ggccggggag
     2281 ctgaaggata cgagcagcga gcgcgagccg ccgcgcgccg tgcgcgggtc tatggcgact
     2341 ctggagcccg cgggcggcgg cgtcacctgc cagtcgaaga ggcggcggcc cgcgggcgcg
     2401 atgtcggact cgaagccgcc gttcgagacc ttctcggcct cggcgccgcc cgtcgcgccc
     2461 gcctcgccga gcacggccag ggcctgcctg tactgcctgc ggtcgtagag tgcgcgcgcg
     2521 attgcgtcgc ccgccccgcc gtgctcgcgc ctctgctccg gcgtcaaact cgaccagacg
     2581 gccagcgcgt tctccaactg ccctcgcccg acgagcacga cggcgagttg cgcgcgcgcg
     2641 cccggcgtct cgctcacggc cgcgaccacg cgcgagatgt tcctgtcata gacctgccac
     2701 gcgaggttga agacctgcgg ccgcagcgcc gggtcagcgt cggcggcgcg ccgaagctct
     2761 gcgaacgcct cgtcggcgcg gcccgcgcgc aggagaatgt tgcccaggtg ccagcgcggc
     2821 tgtgcgtagg agggcgcaag ctctaccgcg cgcctgagcg cgcgcacgcc gccctcgtgg
     2881 tcgcccgccg cgccgcgcgc gcgccccatc tccatccaga tgaggtagtc gttcggcgcc
     2941 agcgccgccg cgcgctcgta ctcttcgagc gccttcggca agtcttcggg caggaagctc
     3001 acgcgccgca gccgcgcgag ccgcaggtgc gtctgcgggt cgcggggcgc gagccgctcg
     3061 gcggccgctg ccgtctccag gtcgcgcgcc gtctccgcca tcgtcgcgcc cgcgccccac
     3121 ctcaccccgt gccaggcccc ccacagcgcc gccgccaccg gcaacgccag cagcgcccgc
     3181 agccagacgg gccggacgtt aatcagtacc aattgttctg ccatacgaag ggagacagaa
     3241 ggcagaatac aggagtcaga gtgaagaacg cctttcttac gacttctgta ttctgccttc
     3301 tactcagaat tcatgcccga ccagctcgat ctctatcctc atgcgcttga gagttatgcg
     3361 cgcctcctcg cagtcgcgca ggattcggcg gacgtgctcg tcgtctatct tcgagctcga
     3421 tatgagcacc tcctcgacct gctgctcctc gcagacgcgg cgcaggttcc cgttgccgcc
     3481 gaagacgcga aggccgtgta tgactcgccc cttcttgagc gggtcgtcgt cgaggaagcc
     3541 tacgggcgtg tactgcaact gcaagttgtt ccgcatctcg cgcagcagca gctcgcccgc
     3601 gtcgcccgcc ccgtagatga gcacgcgccg gccgccctcg cccggggagg gcagcatcct
     3661 gcggaagagc cggaacgcga cgcggctccc ggcgagcatg aggaagaaga ccatcgcgtc
     3721 gaggacgaag acggcgcgcg agaagccctg gaagcggaag gcgaagagca gcaccagcat
     3781 gctcgcgacc gacccgccga cgaccgcctt cgcatagacg atcaggttgt caacgcttat
     3841 gtagcgccac aggccgcgat agacccccgc ggccagcagc gccgtcatct tcacgaatat
     3901 cagcacgggg acggtgctca ggaatagctg ccagacgccg ggccgccagc ccgccccgaa
     3961 gtgcaggacg taggccgcgt agtaggccag tatgatgagc acgacgtcga ggagcacctc
     4021 gaatatgcgg cgcttgtagg agaggtcaac caggaacgag acaatcggct tctcgcgcgc
     4081 cgcctgcacc tcggcctcgt catagacctt gacgcccgcc agatagacgc cgacgagcgt
     4141 cagcacgacg gcgaagccga ggatcatcgc gaagcccgcg tggtactcga actcgcgcac
     4201 gagcatggcg agcacgcccg agccggccgc gaacgcgtag agcatccaga cggcccggcg
     4261 ctccgaaagg cccagggcga cgagcctgtg gctcgcgtgg tcgcgcccgc cctgcgaggc
     4321 cgcccgcccc gagagcttgc gcatgatggt gacgagcgtc gtgtcgaaga tggggatgaa
     4381 gagtatgagg acggggacgg cgacgacgac gatgaagctg cggccgcggc cgcctgaggc
     4441 agacaggagc gccgcgctcg cgagaaagaa ccccacgaac atcgagccgc agtcgcccat
     4501 aaagatggac gcggggttcg tgttgtagaa gaggaagccc accagcgccg ccgcgaacgt
     4561 ggcgagcatg agcgcctccg tcacctgccc gttaatcgcg aggttcgccg cgatgaagac
     4621 ggccgctatc gccgagacgc ccgctgcgag gccgtccatg ttgtcgagca ggttgatggc
     4681 gttcgtgatg cctatgagcc agaatatcgt gagcgccatc ccgaccgacg cggcccaccc
     4741 ccacggcagc accaccccga aatagactac gaggctcgcg cccaggacct gccctatcag
     4801 cttctggtag ggctttatgt gcagccggtc gtcaacgagg ccgacgacga agaggaacgc
     4861 gctcgccccc atcacgaccc acccgtcgcg cgtgtgcggc acgaagagca ggtaggtcac
     4921 ggccacggac gcgaatatcg cgacgccgcc catcatcgcc gtcggcttgc tgtgccacct
     4981 gtccgccttc ggcttcgcga cccacccgcg cctgcgcgcc gccgcccgca cggccggcgt
     5041 caagacgagc gccagcgcga acgacaccgc gacgggcacg agatggctgc tgtcgaaagg
     5101 catggctcta tcccgaaagg gttccggtgt gaaggtagaa gctattagaa ccgccgggat
     5161 aaatcaagtg tcggaaagaa gttatcggcc gcccgcccgg aggccgacgg ccgacgactt
     5221 ttccggccgc ggccttatga gttgccctgc cggccgctgt agtactcgat gacggactgg
     5281 agtatgccgt cgagggacat tgtggggcgg aagccgacga ggcggttgac cttcgtgatg
     5341 tcggggacgc ggcggggcat gtcctcgaag ccctcctcgt aggcctcgtc gtaagggact
     5401 gtcactatct cggacttcga cccggcgagc tccctcacgc ggcgggccag ctccattatc
     5461 gagacctcct cgttcgagcc gatgttgaag acctcgccga cggcctcgtc cttcgccatc
     5521 aggttgacta gggcgccgac cacgtccttg acgtagccga agcagcgcgt ctgcgagccg
     5581 tcgccgtaaa cggttatggg gcggccggcg agcgcctgct tgacgaaggt aggtatcacc
     5641 atgccgtact ggcccgtctg gcgcgggccg acggtgttga agaggcggac gattatcgtc
     5701 ggcagcttct tctcgcgcca gtaggcgagg gcgaggaact cgtcaatggc cttcgagcag
     5761 gcgtaagacc agcgcccctt cgtcgtcgcg cccatgacga ggttgccgtc ctcgcggaac
     5821 ggcacgtcgt tcgagagccc gtaaacctcc gaggtcgagg cgacgagcac cttcttcttc
     5881 ttcttgttcg cctgcgacag caccgcctcg gtgcctttga cgttcgtctc gatggtgcga
     5941 acgggcgact cgacgatgag cttgacgccg acggcggcgg ccaagtggaa gaccacctcg
     6001 cactggtcta tcagctcggc gaggagcggc tggttgtgga cggagtcaat ggtgtagtgg
     6061 aagcgcgggt ggcggcgcag gtgcgctatg ttgtctatgc tccccgtcga gaggtcgtca
     6121 atgacgaaga cctcgtcgcc gcgctcgagg tacgcgtccg acaggtgtga gccgatgaag
     6181 ccggcgccgc cggttatcag tactcgcaaa cttttctatt ctccttctaa ggcgcgcccc
     6241 cggcgcgcga aatcttttca ggcccgccgg ccgccgcccc gcgcgccgcc gccggctcgc
     6301 ccgccgggcc gcacaacccg gcgtagagcg cctgcacgtc gccgagcagc ctctcgaccg
     6361 agtagttgcg cgcgacgaac tcgcgcccgc gctcgcccaa ctgccggcgg agctcggcgt
     6421 tcccgacgag gtgcaggagc gcctgggcga aggcctcggc gtcgccgggc ctgacctgca
     6481 cgccgcgctc gcagacctgc cacgcgcgcg ggcggcgcag cgccccctct tcgagcccgc
     6541 ccaggaggtc aacgaccccg ccgacggccg tagccgcgac ggcccgcgcg ttcgccatcg
     6601 cctctatgag cgtgagcgga gtcccctcgt tgcgggacgt gagcgcgact atgtcgagca
     6661 cggggtaaaa gttctccggg tcgtcacgca ggcccgtgaa tattacatca tccgagagcc
     6721 cgagcgcccg cgcgcgcgct tcgagccccc ggcgcaggtg gccgtcgcct atgacgacga
     6781 agcgcacgcg cgctcgctcg gccgccgcgc ccggctcctc aagcttcctc ttcaaaagcg
     6841 ccgccgattc gaggaacagc tcgtggttct tgacttccgt cagccgcccg acgatcccga
     6901 cgagcacctc ctcgtcgccc gcgccaagct cgcgtcggaa gtgctcgcgc cgctcggccc
     6961 agccgtcgaa ctcggaggtg tcgaggccga gcgggatgac ggcgaactgc ccggggcgcc
     7021 caacgcggaa ctggccgtga atctccgcga gctgctgcgg gcttatcacc acgatgcggt
     7081 cggtcgcgat gcgcgcgagc agccgctcga ttgtgaggaa gacgcgggtc ttcagggggc
     7141 cgtagtagct gtgaaatatg tggccgtggt aggtgtggac gaagcggcac gggcgggggc
     7201 gccccagcag cgccgcgggt gtcgcccagc ggtagagcag ccccgcgagc cggcctaccg
     7261 tcccggcctt cgccgtgtgc gtgtggacta tgtcgggccg ctcgcgcagg aagagccggt
     7321 agagcttcca gaccgtcagc aagtccttcg gcgagatttc gcggctcatc tcgggcagcg
     7381 cgacgcggga gacgccgagc cgctcggcga agtaggccat gtcgccctcg cccggcgcga
     7441 ccgtgccggc gacgagcacc gactcgacgc cgaggcgccg cgagccggcc tcaagccacg
     7501 caacgtgctt cgccggccca ccgacgttca gccgcgcgat gatgcgaacg accttcatca
     7561 gcagtcagca gtcggtagcc agtagccagt agaagaacat gctctacata accgtcgggg
     7621 tgagagtgtc ggcgcgcggc ggcggagccc caatgactgc tggctactgg ctactgacca
     7681 cctgcctttc cgcctccatc ttgttggcgc cggtctcggc gacgagcgtt gaggcgcgca
     7741 ggaggctctc gaaggttccg gcgtccgtcc accagccttc gagctcgtcc cacgtcatct
     7801 cgtcgcgctc gatgtaggcg ttgttcacgt ccgttatctc cagctcgccg cgcgccgaag
     7861 gcttgagcgt cttgatgatg tcgaagacgc cagcgtcgta catgtaaatc cctatgacgg
     7921 cgtactccga cttcggctcc ttcggcttct cctcgatgcg gaggacgcgc cggccgtcga
     7981 gttccggcac gccgaagcgc tgcgggtcgg ggactttctt gagcaggatt ttggcgccgc
     8041 cgccctggtg gcggtaggcg cgcgccgcgc ggcagatgtt gcgctcgatg atgttgtcgc
     8101 cgaggacgac gcagaccggc tcgccgtcgg agaagtcttc gcacaggcgg agggcgtcgg
     8161 ctatgccgcc ctcgccctcc tggtatgtgt agttgaggtg cttgaggccg aagtccttgc
     8221 cgttctttaa gagccgcagg aagtcgccgg ccgagttgcc gcccgtcacg atcattatgt
     8281 ccttaatccc cgcgttgacg agcgcctgga tggggtaata gatcatcggc ttgtcataga
     8341 cgggcagcag gtgcttgttc gtcaccgacg tgagcgggcg caggcgcgac cccagcccgc
     8401 ccgcgagtac gattcccttc aacgtgattc cctccgaaaa aagagttttc gattaaggct
     8461 gttaactcac ttcttgacgg cccacgcctc tatgtaggtg ccgaggtcgc ccatgtcgct
     8521 cgcggccgtg acgaggcggg ccgccgcgcg ctcgagcgag cccatcaggc cggggcggtc
     8581 gggcagcatg ttctcgccgc cgtaaacgcg gaagaccgcg acgcgcaggc cgtgcttggc
     8641 gagcaggagc ctgagcgcgc gctggttgaa gccgaagacg tggaacggct cgaacgtcgg
     8701 cgcgaggttc acgctccagt cccgaccgcg caggcgctgg tagaggttcc cgagccggaa
     8761 gtaaaggccg gcctcgttcg gcacgtcaac gaagagcgcg ccgcccggcc gcagcacgcg
     8821 cgctatctcg cgcacggtct cgtccgggtt gtagaggtgt tcgagcacgg ccgcgagaat
     8881 cacggcgtcg aactcgccgt cgccgaagcc gcagcgctcg aggggctcgc cctttatctc
     8941 cgcgcccgac gcgcgggcgg cgtactcggc gaaggacggc gagggctcta tgccgacggc
     9001 ctgccacccc tgctcgcgcg cggccacgag cacctcgccg cggcccgagc ccacgtcgag
     9061 cacgcggccc ggcccgcccg tcagccgcgc ggcgtggcgc ataaggtcgc gcgcgccctg
     9121 tagcctcttc ccgccctcgt ggttgtggaa gtaagcgtct gcctccatcg agtagtgctg
     9181 ccccacgccg cccacgggga ccggcatcgg gttcgggaag accagcccgc acgtcgcgca
     9241 gcgccagatg cggcactcga cgccgagccc cgcgcggtgc gccgggcctc cccggcgccc
     9301 gacgtagcgc gagggcggcg cctcgcagac cgggcagtcc tgcggcaccc agcggtacgc
     9361 gccgccggcc tcaacaaccg ccgcttcttc tgccgaagcc gcgcgagtag cagccaccgc
     9421 ttccgtcctc cttgcccgag cccctcactt cagtcaatga atcgccggaa ccagagctcc
     9481 agcatcagga gagtccagag ctggtgcgtg tagtcggccc gcgcctcggt gtgctcctcg
     9541 accatccggc gcacgcgctc cggcctgagc aggccgcggc ccgcgaactt ctccgacaga
     9601 aggttctccc tcaggaacgg ccccatctcg ccgcggaacc agtggccgac ggggacgccg
     9661 aagcccatct tgccgcgcga gaggttctcg gccggcagaa gttttttgag cgtgcgcttg
     9721 agtatgtact tcgtcgtcag gcgccggagc ttgaggcgct cagggaggga cgcggcgaac
     9781 tctatgacgt ggtggtcgag gaacggagag cgcgcttcga gcgagacggc catgctcgct
     9841 atgtcaacct tgacgagcag gtcgttgggc aagtacgtca tcgtgtcggc cagcagcgcg
     9901 gcgtcaacga cgcccgcgcc gttggcgcgc gcgaaccagg gcgctatcca ctggcgcacg
     9961 tccgccgcct cggtctcgcg gcggaactct tcggtgtaaa gctcctgctt cgcctcgggg
    10021 cccagcacgc tcacccagcg caagtacctg tcaactggcg ggaggctcgc cgcgcgcagg
    10081 aagcgcttga ggtcgcgcac gcggcctcgg cgaagctccg aggagggcag gagcgagacg
    10141 gcctgcctta tcacgccctc gcgcagaggc cccggcaact tcctgtagcg ctctgacagg
    10201 cgcatcgcgg cgtagcgctc gtagccggcg aagcactcgt cgccgccgtc gccgttcaag
    10261 gccacggtga cgtgccggcg cgtctcgcgc gcgacgtagt aggtcgggat ggcggacgag
    10321 tcggcgtagg gctcgccgta gtgctcgacg agcttcggga gcacctccat cgcgtcgggg
    10381 cggacgacga actcgtggtg ctcggcgccg acgaactcgg cgacgcggcg cgcgtggtgc
    10441 agctcggaga agtcctgctc gtcgaagccg atggagaagg tcttgacggg gcccgagctc
    10501 tcctcggcca tcagggcgac gacggccgag gagtccacgc cgcccgagag gaaggcgccg
    10561 agcggcacct ccgacatcag gcgcacgcgc acggcctcgc gcagaagctc cacggcgcgc
    10621 tcgccggcct cctcttccgt gacctttatc ttactgttga tgtcgaggtg ccagtagcgc
    10681 tccgtcctga cctcgccttc gcgcgtgagg gtgagcgtgt gtccgggctc g
//
LOCUS       DASPKR010000379         5470 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1476641, whole genome shotgun sequence.
ACCESSION   DASPKR010000379 DASPKR010000000
VERSION     DASPKR010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5470)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5470
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1476641"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            153..437
                     /locus_tag="VD968_10320"
     CDS             153..437
                     /locus_tag="VD968_10320"
                     /inference="COORDINATES: protein motif:HMM:NF003817.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HYE14823.1"
                     /translation="MAEEIKCARCGERRAPLGYAPFPNELGQRVGSEICQKCWAEWLQ
                     RQNMIINHYGLDFMKEDAQEFLFDNMKAFFFGGGTDTAQIDTSKEGTIKW"
     gene            641..1189
                     /locus_tag="VD968_10325"
     CDS             641..1189
                     /locus_tag="VD968_10325"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HYE14824.1"
                     /translation="MSRKTVLTLAAGVALAAVAAGCGGGDNANANNANRANTNANNSN
                     SVVVTNTNANANTAGGAYNRNYNSRAEYNASEANYRSEARNAGQSIGQGLEDGWIHFK
                     VRAALAAADDLRDSTINVDVDNNVVTLRGSVESPAQKTKAATVAKVEGVKNVVNRLEI
                     RAGDANKNGDAKTAGNTNTKTK"
     gene            1438..3246
                     /locus_tag="VD968_10330"
     CDS             1438..3246
                     /locus_tag="VD968_10330"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE14825.1"
                     /translation="MRKPYGLPAALAVAVACTAAWLAASAVAQRAATGIDTYAITNAR
                     IVTVSGPTIERGTLVVRDGLIAAVGERVTAPPDARTIDGTGLTVYPGIIDASTTLGIP
                     RPTPTPGATPGAGGGGGLAGLFGQTAPSAVSPNSSQLPGLQPEVLASDIIRPGGNEIE
                     AARNAGITAAQTAPRGNIFLGQSAVINLSGDSPQQMIVRTPVALYVGLAPIGGGQYPG
                     SLMGVFSSVRQLLLDARRYRESQEIYERSPRGLRRPGVDKSLAALLPVLARQMPVVMQ
                     ADREREIERALDLAQEFNIQLVINGGAEAHRQAERLKAMNVPVLLSLNFPRRAAAASP
                     EADPEPLRVLRERVEAPKTAGRLQAAGVRFAFQSGGMATMSDFLSNAAKAVEQGLPAA
                     DAVRALTLRPAEILGVSQQLGSIEVGKIANLTITRGDIFARDRRIAHVFIDGRPVELR
                     PAATGTGAANASGNWALNVRFEGSSSEQSEFTVTLNLQQQGDRLTGSIQGQLGSGQIA
                     EGTITGGEINFTVPITLPGPGSQTTDAIFNGTVTGNEMRGTVQVVGRGPGTFTGSRSG
                     TPPSAPAGQQQRQPATPPGARPTPTPPGEQAPPPPN"
     gene            3349..4752
                     /locus_tag="VD968_10335"
     CDS             3349..4752
                     /locus_tag="VD968_10335"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HYE14826.1"
                     /translation="MLLGATATSRAQGRGAARGGETLIRNATVLTVTKGTLQNADVLV
                     RGGKIAAVGPGLRAPEGARVIDATGKFVLPGIIDAHSHSMMDGSVNECTQSVTSMTRT
                     RDILNPLDVDLYRGLAGGVTSLLLLHGSCNAIGGQSTTVKIKYGRPAAEFVFPGAPPG
                     IKFALGENPKRSNFNLPGVARRYPATRMGVEETIREAFTRARDYKRTWDEHREQSRSN
                     KSLIPPRRDLQLEPLVEILEGKRYVHAHCYRADEILMLINLADEFGFKIRTFQHVLEG
                     YKVASEIARHGAGASAFADFWGYKIEAYDAIPYNVPIMTRHGVVASVNSDSDERARRL
                     NIEAAKMMRYGGLTEEEALKLITWNPAWQLGIQDRVGSIEVGKDADFAVWSAHPLSVY
                     ARVELTFVDGEVFFDRQADLARRPQLEQERRQLEQAEANRPPAQGGTPPRAPSEIRRA
                     YTHADDLHDAQDEENQR"
     gene            4749..>5470
                     /locus_tag="VD968_10340"
     CDS             4749..>5470
                     /locus_tag="VD968_10340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14827.1"
                     /translation="MKTFRRFSALLILAAAVAHCYPCLPASAQDIVSPDAQGAAAPGS
                     FVIRGARIVTVTGPDIENGTLVITNGRIAAVGAGAQAPAGAREIDARGLTVYPGMIDT
                     ATSMGLIEIGSGAPGTVDTAEIGDLNPNASALWGINPHSAHVDVTRVAGVTTVVSMPS
                     GGAVSGQAALINLVGTTQREMALVPAVALVIDFPRIGAGGGGGGGQQQQGITPDAVSA
                     RDRRVGEIRRMLRDAEAYGRAQ"
BASE COUNT          968 a         1984 c         1771 g          747 t
ORIGIN      
        1 tcatcggcgc ggacgggcgc gtccgtcacc tgaaggtgca gcccgtctcg ctcttccgcc
       61 cgaaggacga agaggtgctc gccgccatac gcgcggcgag tgtataatgc aggccgaacc
      121 gaacagacaa acaaaccggc gggggaatcc tgatggctga agagataaag tgcgcgcgtt
      181 gcggagagag gcgcgcgccg ctcggctacg cgccgttccc gaacgagctg gggcagcgcg
      241 tcggctccga aatctgccag aagtgctggg ccgagtggct acagcgccag aacatgataa
      301 tcaaccacta cgggctcgac ttcatgaagg aggacgcgca ggagttcctc ttcgacaaca
      361 tgaaggcctt cttcttcggc ggcggcacgg ataccgccca gatagacacc tcgaaggaag
      421 gcacgatcaa gtggtgaggg gccaggggcc agttaaaaac tcatttccgg cctctggccc
      481 tttgaccccg gcccctcttt cgcccttgtc ctcacgccgc cccggcgtta agatgtgcgc
      541 cagatttaag cccaaacgct cgtgctgaaa gttagggagg gggcggcgcc ggtctgccgg
      601 gcgcccccgc gcgcacgaat cgcaattcac aggagaaggt atgagcagga aaaccgtctt
      661 gacactggcc gcgggcgtcg cgctcgcggc cgtcgcggcc gggtgcggcg gcggcgacaa
      721 cgcgaacgcc aacaacgcca accgcgcgaa cacgaacgcc aacaactcga acagcgtcgt
      781 cgtcaccaac acgaacgcca acgccaacac cgcgggcggc gcctacaacc gcaactacaa
      841 ctcgcgcgcc gagtacaacg cctccgaggc aaactaccgc tccgaggcta ggaacgcagg
      901 ccagagcatc ggacagggcc tcgaggacgg ctggattcac ttcaaggtgc gcgccgcgct
      961 cgccgcggcc gacgacctgc gcgactcgac catcaacgtt gacgttgaca acaacgtcgt
     1021 gacgctgcgc ggctcggtcg agagcccggc gcagaagacg aaggcggcga ccgtggcgaa
     1081 ggtcgagggc gtcaagaacg tcgtcaacag gctcgaaatc cgagccggcg acgccaacaa
     1141 gaacggcgac gccaagacgg ccggcaacac gaacacgaag acgaagtagc cgccccccgg
     1201 ccggcgacag ttaagttagt aaagggcgcg gcgccgcagg ccgcgttcgc ggcgccgcgc
     1261 cccggcagtt tccctcaagc tttaaaaccc gaaaattcgg ttcacgcggg ctcggccgcc
     1321 ctcgccggcc ctccgggcct gtttgagaat tccgcttagc gcctccgagc gtcttcgcgt
     1381 gagctttggt ctcacgctga ggcgcgggag gcgccggcac agccgaccta aattcttatg
     1441 agaaaacctt acgggctacc ggcggcgctc gccgtcgcgg tcgcttgcac ggcggcgtgg
     1501 ctggcggcct cggccgtcgc gcagcgcgcc gcgaccggca tagacaccta cgccatcacc
     1561 aacgcgcgca tcgtcaccgt gagcggcccc acgatagagc gcggcacgct cgtcgtgcgc
     1621 gacggtctca tcgccgccgt aggcgagcgc gtcaccgcgc ctcccgacgc gcgcacgatt
     1681 gacggcacgg gcctgaccgt ctatcccggc atcattgacg ccagcaccac tctcggcata
     1741 ccgcgcccga ctccgacgcc cggcgccacg cccggcgccg ggggcggcgg gggcttagcc
     1801 ggcctcttcg ggcagacggc gccctcggcc gtctcgccca actcttcgca gcttcccggc
     1861 ctgcaacccg aggtgctcgc ctcggacatc atccggcccg gcggcaacga gatcgaggcg
     1921 gcccgaaacg caggcatcac ggccgcgcag accgccccgc gcggcaacat cttcctcggc
     1981 cagtcggccg tcataaacct ctcgggcgac tcgccgcagc agatgatagt tcgcaccccg
     2041 gtcgcgctct acgtcgggct ggcgccaata ggcggcgggc agtaccccgg ctctttgatg
     2101 ggcgtcttct cctcggtgcg ccaactactg ctcgatgcgc gccgctaccg cgagtcgcag
     2161 gagatctacg agcgcagccc gcggggcttg cgccgccccg gcgtcgacaa atcgctcgcg
     2221 gcgcttctgc ccgtgctcgc gcggcagatg ccagtcgtca tgcaggccga ccgcgagcgc
     2281 gagattgagc gcgccctcga cctggcccag gagttcaaca ttcagctcgt catcaacggc
     2341 ggcgcggagg ctcatcggca agccgaacga ctgaaggcga tgaacgtccc cgtcctgcta
     2401 tccctgaact tcccgcgccg cgcggccgcc gcctcgcccg aggcagaccc cgaacctttg
     2461 cgtgtgctgc gcgagcgcgt cgaggcgccc aagacggccg gccggcttca ggcggcgggc
     2521 gtgcgctttg ccttccagtc gggcgggatg gcgacgatgt cggacttcct ttcgaacgcg
     2581 gcgaaggccg tcgagcaggg cttgcccgcg gccgacgccg tgcgggcgct cacgctgcgg
     2641 cccgccgaaa tcctcggcgt ctcacagcag ctcgggagca ttgaagttgg caagatcgcc
     2701 aacctcacca tcacgcgcgg cgacatcttc gcgcgcgacc ggcgcatcgc ccacgtcttc
     2761 atagacgggc ggcccgtaga gctgcggccc gccgcgaccg ggacgggcgc cgcgaacgcg
     2821 tccggcaact gggctctcaa cgtaaggttc gagggctcgt cctccgagca gtccgagttc
     2881 accgtcacgc taaacctgca acagcagggc gaccgcctga cgggctcgat tcagggccag
     2941 ctaggctccg gccagatagc cgaggggacg attacgggcg gcgagattaa cttcaccgtc
     3001 cccatcacgc tccccggccc cggcagccag acgaccgacg ccatattcaa cggcaccgtc
     3061 accggcaacg agatgcgcgg caccgtgcag gtggtgggcc gaggccccgg cacgttcacg
     3121 ggctcgcgct cggggacgcc gccgagcgcg cccgccggcc agcagcagcg ccagccagcg
     3181 acgccgcccg gcgcgcggcc gacgcccacg ccccccggcg agcaggcccc gcccccgccc
     3241 aactgagtaa gcccggcgcg tgaaatcggt gagcgcggcc ccggccttcg gccttaattt
     3301 tcggagagga ttatgagacg acttttttcg acggctgttt ctcttgcaat gctgctcggc
     3361 gcgaccgcca cgtcgcgcgc gcaggggcgc ggcgcggcgc gcggcggcga gactttgata
     3421 cgcaacgcca cggtgctcac ggtcacgaaa ggcacgctac agaacgccga cgtgctcgtg
     3481 cgcggcggga agatcgccgc cgtcggcccc ggcctgcgag cgcccgaggg agcgcgcgtc
     3541 atagacgcca cgggcaagtt cgtcctgccc ggcatcattg acgcgcactc gcactcgatg
     3601 atggacggct ccgtcaacga gtgcacgcag tccgtcacct ccatgacgcg aacgcgagac
     3661 atcctgaacc cgctggacgt tgacctctac cgcgggcttg cgggcggggt cacatcgctc
     3721 ctactgctcc acggctcctg caacgccatc ggcgggcaga gcacgaccgt caagattaag
     3781 tacgggcgcc cggcggccga gttcgtcttc cccggcgcgc cccccggcat caagttcgcg
     3841 ctcggcgaga acccgaagcg ctcgaacttc aacctgccgg gcgtcgcgcg ccgctacccg
     3901 gcgacccgca tgggcgtcga ggagacgata cgcgaggcct tcacccgcgc ccgcgactac
     3961 aagcgcacgt gggacgagca ccgcgagcag tctcgctcga acaagagcct catcccgccg
     4021 cgccgcgact tgcagctaga gccgctcgtc gaaatcctcg agggcaagcg gtacgtgcac
     4081 gcgcactgct accgcgcgga cgagattctg atgctcatca acctcgcaga cgagttcggc
     4141 ttcaagattc gcacgttcca gcacgtcctc gaaggctaca aggtggcgtc cgagatagcg
     4201 cgccacggcg cgggcgcctc ggccttcgcc gacttctggg gctacaagat cgaagcctac
     4261 gacgcaatcc cctacaacgt ccccatcatg acgcgccacg gcgtcgtcgc ctccgtcaac
     4321 tccgactcgg acgagcgcgc ccgccgactc aacatagagg ccgccaagat gatgcgctac
     4381 ggcggcctga ccgaagagga agccctcaag ctcatcacct ggaacccggc gtggcagcta
     4441 ggcattcaag accgcgtcgg ctccatcgag gtcggcaagg acgcggactt cgccgtgtgg
     4501 agcgcgcacc cgctctcggt ctatgcgcgc gtcgagctga ccttcgttga cggcgaggtc
     4561 ttcttcgacc gccaggcgga cttggcgcgg cggccgcagt tagaacagga gcgcaggcag
     4621 cttgagcagg ccgaggccaa ccgcccgccc gcgcagggcg gcacgccgcc gcgcgcgccc
     4681 tccgagatac gccgcgccta cacgcacgcc gacgacctgc acgacgcgca ggacgaggag
     4741 aaccagcgat gaagaccttc aggcgcttta gcgctctcct gattctcgcc gccgccgtcg
     4801 cgcactgcta cccgtgtctc ccggcctctg cgcaggacat cgtcagcccc gacgcgcagg
     4861 gggcggccgc gcccggctct ttcgtcatac gcggcgcgcg catcgtcacc gtcaccggcc
     4921 ccgacatcga gaacggcacg ctcgtcatca cgaacggccg catcgccgcc gtaggcgcgg
     4981 gcgcgcaggc gccggccggc gcgcgggaga ttgacgcgcg cggcctcacc gtctatcccg
     5041 gcatgataga cacggcgacc agcatggggc tcatcgagat aggctcgggc gcgcccggca
     5101 cggttgacac ggcggagata ggcgacttga acccgaacgc ctctgcgctc tggggcatca
     5161 acccgcacag cgcgcacgtt gacgtgacgc gcgtcgcagg cgtcaccacc gtcgtctcga
     5221 tgccttcggg cggcgccgtc tctgggcagg ccgcgctcat aaacctcgtc ggcactacgc
     5281 agcgcgagat ggcattagtc ccggcggtcg cgctcgtcat agacttcccc cgcatcggcg
     5341 ccgggggcgg gggcggaggc ggccagcagc agcagggcat cacgcccgac gccgtaagcg
     5401 cccgcgaccg gcgcgtcggc gagatacgcc gcatgctccg cgacgccgaa gcctacggcc
     5461 gcgcgcagga
//
LOCUS       DASPKR010000380         5237 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_183330, whole genome shotgun sequence.
ACCESSION   DASPKR010000380 DASPKR010000000
VERSION     DASPKR010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5237)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5237
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183330"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VD968_10345"
     CDS             <1..208
                     /locus_tag="VD968_10345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14828.1"
                     /translation="LAFEPLERGPDVRHAHRDVVDAGAALFEEFGDGRALVRRLKQLD
                     ALALEVANKRRDPYTAVEEFMASA"
     gene            214..633
                     /gene="mce"
                     /locus_tag="VD968_10350"
     CDS             214..633
                     /gene="mce"
                     /locus_tag="VD968_10350"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009036790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HYE14829.1"
                     /translation="MKVEHIGIATRSIEEALRFWRDALGLEVRHTEVVEEQGVRVAML
                     PVGEPRIELLEPTGDGSPVAKFLEKRGAGIHHVAVRVEDIRAALARLKAGGARLIDEE
                     PRVGAGGCLVAFVHPSAAGGVLLELVEETAGAEGETE"
     gene            652..1953
                     /locus_tag="VD968_10355"
     CDS             652..1953
                     /locus_tag="VD968_10355"
                     /inference="COORDINATES: protein motif:HMM:NF025002.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYE14830.1"
                     /translation="MSLSLKVFAASFAVLFSCPAAQAQRRARVARPAAPPAAINLTAQ
                     DMALIVEGLQLPPDVQAKLASDEAERRKFAKDVREMLSVAEEAKAAGYAARPELKLQA
                     ELSRAFVIAKAYFKLREADGAKTSEEVVTQAEIDALLQEPASAPLLEAFLEDYRKNGP
                     GRGAALTDEQRAQLRNHWGRVMVARRKGVAAGLDRERKTQLAVMLQQSRLLAGAYSKD
                     LGERSKATDAEVAAYLASHPELNSTKEREKIEGILGRVRAGEDFAKLADEFTEDPSGK
                     GKGGDLGWFSRGMMVAPFEAAAFALKPGEVSGVVETLFGFHIIKLEDRKTDAGAGGKA
                     EESVRARHILIGYNAALRSPGGRRQSPAEHARSAVEKQKIDRAIAEIIARRGVRVAET
                     FTVGETGAAPPGGDAQTPAAGAKTTTARPTATGRKPARRKN"
     gene            2061..3641
                     /locus_tag="VD968_10360"
     CDS             2061..3641
                     /locus_tag="VD968_10360"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYE14831.1"
                     /translation="MITCEKCGTQMPDDSTSCEVCGTAVTPAAASAEEAGEGAGQETE
                     TSFRAEAPGGETDDAAAGAATTPGAVTASDAAAERRAAAAQTAPRNTSSTTKVVVVCV
                     VAFLAAVGLIFWQAKGSRAEANMTAEDMALFAEGLSPSMRMQLANSPEERKKIAEDIR
                     KILAVAEEARRNGIADRPEVKRQLEIGRLFVIAQMYEKKQRDAKANPQDYTPKPEEVE
                     AFLKQPGKSEQADAFLEDLRKLGLIPEGQEITEEDKKEFRQTWAGTNLMAQKGIAGGV
                     DKERATHLQIRLQQAFVLNRIYSEELAKKLEPTEEEINAKLGEARKEAEQVVQRARSG
                     EDFDALVKEFSDEPGAKSRGSDLGWFGRAVEGQPGGMVKPFEDAAFALKNEGDISDIV
                     ETQFGFHVIKLLGRRTDKGPDGKPQEQVHASHVLIAPADNAAGGLMGAQKTLREKVRD
                     SLVREKQEKAIKEIVERSKVRVPEDFVVKAPDIPQRPMMPPGDFGSPHGELPDAPPAQ
                     APANTSGGSQKGGGDRKK"
     gene            3649..4491
                     /locus_tag="VD968_10365"
     CDS             3649..4491
                     /locus_tag="VD968_10365"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE14832.1"
                     /translation="MQFGDYRASVVPDAEFRLDGGAMFGVVPRALWSKVAPPDAENRV
                     RLNCNCLFVEAARERILVETGIGDKFSPRHSEMYGVRRERTLGETLREVAGCAPEDVT
                     IVVNTHLHFDHAGGNTRLDESGRAVPAFPNARYFVSREEFEHAERPHERDRASYLPEN
                     WRPVAETGQLELKPARYEVVPGLTLEAVPGHSRTMQCVRLERGGRTLYGFADLVPTRA
                     HLPLAWVMGYDLYPVETLEAKRRLLPQAAREGWLCLFYHDPDAPLARVHEGEGGKLTA
                     APCE"
     gene            4506..5105
                     /locus_tag="VD968_10370"
     CDS             4506..5105
                     /locus_tag="VD968_10370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14833.1"
                     /translation="MLRRTAHSLAFILLLAQAAPAQDERLTSLLEGAVTFSLPAEWAE
                     QRHVDGPRHGYAHLKIPYAEAERAGQTARAALSAGAVPPGVTVRHISDGVYQNKYEGL
                     AVIRDDLDGDEWRTVVWKAKFDAAPYLTLHRFGVSAGKQVELMVSLPLVEGAGADAWL
                     ARAVEQFNAACESLKIDGKNKFGTRLKPDKITAALKAKR"
BASE COUNT          970 a         1766 c         1821 g          680 t
ORIGIN      
        1 cctggccttc gagccgcttg agcgcggccc ggatgtccgg cacgcgcacc gcgacgtggt
       61 ggatgccggg gccgcgcttt tcgaggaatt tggcgacggg cgagccctcg tgcgtcggct
      121 caagcagctc gacgcgctcg cgctggaagt cgccaacaag cggcgcgacc cctacacggc
      181 cgtcgaggag ttcatggcct ccgcttagga aagatgaaag tagagcacat aggaatcgcg
      241 acccgtagca tcgaagaggc tctcaggttc tggcgcgacg cgctggggct cgaggtcagg
      301 cacacggaag tcgtcgagga gcagggcgtg cgcgtggcga tgctgcccgt gggcgagccg
      361 cgcatagagc tgctggagcc gaccggcgac ggctcgcccg tcgcgaagtt cctcgaaaag
      421 cgcggggccg gcatccacca cgtcgccgtt cgcgtcgaag acatacgcgc ggcgctcgcg
      481 cgcctgaagg ccgggggcgc gcgcctcatt gacgaggagc cgcgcgtcgg cgcgggcggc
      541 tgcctcgtcg ccttcgtcca cccgtccgcg gccggcggcg tcctcctgga gctcgtcgaa
      601 gagactgcgg gcgccgaagg tgaaaccgaa taattaagaa gggcttttat tttgtcatta
      661 agtttgaagg tcttcgcggc gtcgttcgcc gtgctctttt cgtgcccggc cgcgcaggcg
      721 cagaggcggg cgcgcgtcgc gagacccgcg gcgccgccgg ccgcgattaa cctcacggcg
      781 caggacatgg ctctcatcgt cgagggcttg cagctacccc cggacgtgca ggcgaagctt
      841 gcctcggacg aggccgagcg gcgcaagttc gccaaagacg tgcgcgagat gctgtcggtg
      901 gcggaggagg ctaaggcggc cggctacgcc gcgcgccccg agcttaagtt gcaggccgag
      961 ctctcccgcg ccttcgtcat cgcgaaagct tacttcaagc tgcgcgaggc ggacggcgcc
     1021 aagacctccg aagaggtcgt cacacaggcc gagattgacg ccctcctgca agagcccgct
     1081 tcggcgccgc tgctcgaagc cttcctcgaa gactaccgca agaacggccc cggccgcggc
     1141 gcggccctca cggacgagca gcgcgcacag ctccgcaacc actggggccg cgtgatggtc
     1201 gcgaggcgca agggcgtcgc cgcggggctc gaccgcgagc gcaaaaccca gttggccgtc
     1261 atgctccagc agtcaaggct gctggccggc gcctactcga aagacctcgg cgagcgcagc
     1321 aaggcgaccg acgccgaggt ggccgcctac ctcgcctcgc accccgagct gaactctacg
     1381 aaggagcgcg aaaagattga ggggatactc gggcgcgtgc gcgcgggcga ggacttcgcg
     1441 aagctcgccg acgagttcac cgaagacccg agcgggaagg ggaagggcgg cgacctcggc
     1501 tggttcagcc gcggcatgat ggtcgcgccg ttcgaggcgg cggccttcgc gctcaagccg
     1561 ggcgaggtga gcggcgtggt cgagacgctg ttcggcttcc acataatcaa gctcgaagac
     1621 cgcaagaccg atgcgggcgc gggcggcaag gcggaggaga gcgtgcgtgc gcgccacatc
     1681 ctcatcgggt ataatgccgc gcttcgcagc cccggagggc gccgacagtc gcccgccgag
     1741 cacgcccgca gcgcagtcga gaagcagaag attgaccgcg ccatcgcgga gataatcgct
     1801 cgccggggcg tccgtgtcgc ggagaccttc acggtcggcg agaccggagc cgcgcccccg
     1861 ggcggcgatg cacaaacgcc cgcagccggc gcaaagacga cgacggcgcg ccccacggcc
     1921 acgggccgca agccggcgcg gcgtaaaaac tagaaggctt tcgagagccg caggccggtg
     1981 ccggcggccc ggttaacaaa cgtcctgttc aaacgccact tttaatagaa gcgctggctg
     2041 gactgatttt gaggtaactg atgatcacct gtgaaaaatg cgggacgcag atgcccgacg
     2101 attcgactag ctgcgaagta tgcggcacgg ccgtgacgcc cgccgccgcc tcagccgaag
     2161 aggcgggcga gggcgccggc caggaaaccg agacctcctt ccgcgccgaa gctccgggcg
     2221 gcgagacgga cgacgccgcg gcgggcgccg cgaccacgcc gggcgcagtg acggcctcgg
     2281 acgccgcggc cgagaggcgc gccgccgccg cacagactgc cccgcgcaac accagctcga
     2341 cgacgaaggt cgtagtcgtc tgcgtcgtgg ccttcctcgc cgcggtcggc ctcatcttct
     2401 ggcaggcgaa gggcagccgc gccgaggcca acatgacggc cgaggacatg gcgctcttcg
     2461 ccgaggggct ttcgccctcg atgcgcatgc agctcgccaa cagccccgag gagcgcaaga
     2521 agatagccga ggacatccgc aaaatcctcg ccgtcgcaga ggaggcgcgc cgcaacggca
     2581 tcgccgaccg ccccgaggtc aaacggcagc tcgagatagg ccgcctcttc gtcatcgcgc
     2641 agatgtacga gaagaagcag cgcgacgcga aggccaaccc acaggactac acgcccaagc
     2701 ccgaggaggt agaagccttc ctcaagcagc cgggcaagtc cgagcaggcc gacgccttcc
     2761 tcgaagacct gcgcaagctc gggctcatcc ccgagggcca ggagataacc gaggaggaca
     2821 agaaagagtt ccgacagacg tgggcgggca cgaacctgat ggcgcagaag ggcatcgccg
     2881 ggggcgttga caaggagcgc gccacgcacc tccagattcg cttgcagcag gcgttcgtcc
     2941 tgaaccgcat ctactccgag gagcttgcga agaagcttga gcccacggag gaggagataa
     3001 acgccaagct aggcgaggcg cgcaaggagg ccgagcaggt cgtgcagcgc gcccgctccg
     3061 gcgaggactt cgacgcgctc gtcaaggagt tctccgacga gccgggggcg aagtcgcgcg
     3121 gcagcgacct cggctggttc ggccgcgccg tcgagggcca gcccggcggc atggtcaagc
     3181 cgttcgagga cgccgcgttc gccctcaaga acgagggcga cataagcgac atagtcgaga
     3241 cgcagttcgg cttccacgtc atcaagctcc tgggccgccg cacggacaag gggccggacg
     3301 gcaagccgca ggagcaggtt cacgccagcc acgtcctcat cgcccccgcc gacaacgctg
     3361 ccggcggcct catgggcgcg cagaagacgc tgcgcgagaa ggttcgcgat tcgctcgtcc
     3421 gcgagaagca ggagaaggcg ataaaggaga tagtcgagcg ctcgaaggtg agagtcccgg
     3481 aggacttcgt cgtgaaggcg cccgatatac cgcagcgccc gatgatgccg cccggcgact
     3541 tcggttcgcc gcacggcgag ctcccggacg cgccgccggc acaggccccc gccaacacct
     3601 cgggcggcag ccagaagggc ggcggcgaca ggaagaagta gcggccccgt gcagttcggc
     3661 gactaccgcg caagcgtcgt ccccgacgca gagttccgcc tcgacggcgg cgcgatgttc
     3721 ggcgtcgtgc cgcgcgccct ttggtcgaag gtcgcgccgc ccgacgcgga gaaccgcgtg
     3781 cgcctgaact gcaactgcct cttcgtcgag gccgcccgcg agcgaatact cgtcgagacc
     3841 ggcataggcg acaagttctc cccgcgccac tcggagatgt acggcgtgcg gcgcgagcgc
     3901 acgctgggcg agactctgcg cgaagttgcg gggtgcgcgc ccgaggacgt gaccatagtc
     3961 gtcaacacgc acctgcactt cgaccacgcg ggcgggaaca cgcggctcga cgaaagtggc
     4021 cgcgcggtcc ccgccttccc gaacgcgcgc tacttcgtct cgcgcgagga gttcgagcac
     4081 gcagagcgcc cgcacgagcg cgaccgcgcc agctacctgc ccgagaactg gcggccagtc
     4141 gccgagaccg gacagctcga attgaagccc gcgcgctacg aggtggtgcc gggcctcacg
     4201 cttgaggcag tgccgggcca ctcgcgcacg atgcagtgcg tcaggctcga gcgcggcggg
     4261 cgcacgctct acggcttcgc agacctcgtg cctacgcgcg cgcacctgcc gctcgcgtgg
     4321 gtgatgggct acgacctcta ccccgtcgag acgctcgagg cgaagaggcg cctgctgccg
     4381 caggctgcgc gcgagggctg gctctgcctt ttctaccacg accctgacgc cccgctcgcg
     4441 cgcgtacatg agggcgaggg cgggaagctc acggccgccc cctgcgaatg aaactgggaa
     4501 cttccgtgct tagaagaacc gcgcacagcc tcgctttcat cctcctgctc gcgcaagccg
     4561 cgcccgcgca ggacgagcgg ctcacgtcgc tgctcgaagg ggccgtcacc ttcagcctgc
     4621 cggccgagtg ggccgagcag aggcacgtgg acgggccgag gcacggctac gcgcacctta
     4681 aaatccccta cgccgaggcc gagcgcgcgg ggcagacggc gcgcgccgcc ctgagcgccg
     4741 gcgccgtccc gccgggcgtc accgtccggc acataagcga cggcgtctat cagaacaagt
     4801 acgaagggct cgcagtcata agagacgacc tcgacggcga cgagtggcgc accgtggtct
     4861 ggaaggctaa gttcgacgcg gcgccgtacc tcacgctcca ccgcttcggc gtctcagccg
     4921 gcaagcaggt cgagctgatg gtctctctcc cgctcgtcga gggcgcgggc gcagacgcct
     4981 ggctcgccag ggccgttgag cagttcaacg ccgcgtgcga gtcgcttaag attgacggta
     5041 agaacaagtt cggcacccgg ctcaagccgg acaaaataac ggcagcgctg aaagcgaaac
     5101 ggtaagacga tgacgaaagc cgcaataggc atcatagggg gcagcggcct ctaccagatg
     5161 cccgagttga aagaggtcga agaggtaagc gtggggacgc cgttcgggcc gccgtcggac
     5221 gccttcatcg tcggcac
//
LOCUS       DASPKR010000381         3997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1088827, whole genome shotgun sequence.
ACCESSION   DASPKR010000381 DASPKR010000000
VERSION     DASPKR010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3997)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3997
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1088827"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..853)
                     /locus_tag="VD968_10375"
     CDS             complement(<1..853)
                     /locus_tag="VD968_10375"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HYE14834.1"
                     /translation="MAETGNLRDDPLWYKDAVFYEVYVRGFYDSNGDGIGDFRGLTEK
                     LDYLEWLGVDCLWLLPMYQSPLRDGGYDIADYYSILPEYGTVEDFKEFLDAAHARGIR
                     VITDLVINHTSDQHPWFLEAVSSPDSPKRDWYVWSDDPNRYAEARIIFTDTEKSNWTW
                     SEQAQSFYWHRFFSHEPDLNYDNPEVHQAMFDVVDFWLEMGIDGFRVDAVPYLYEREG
                     TNCENLRETHDFVKLLRAHIDSKFRNVMLLGEANQWPEDVVEYFGGGDEFHMNYHFPI
                     MPRLFMAL"
     gene            1095..3479
                     /locus_tag="VD968_10380"
     CDS             1095..3479
                     /locus_tag="VD968_10380"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
                     /protein_id="HYE14835.1"
                     /translation="MPALSDYAPAKLKASLARAAFTALLALAALIATAPGALAQHNTP
                     TINGTISAGEYGDHAEGMNQKATGSGQTWYMTWDNTNLYVAVTNANLGQGVVLYIDLE
                     PQTAPRTWDNNTKGNLTGVAYDGANFSPLPFLADFVAYFKDGYQECRRKDNAGGWTSA
                     TAPCGTYLSGAGDVRELAIPWSAIRGNTSVRPLEFNFFGYAVSHDGFVYGQIPQGNPV
                     GNVGTSATADRFYRVRNTGNGTSTEPFSSEYGNCVAPPSDLEAWWTGNGYRDDIQGSN
                     HLTLQNGLTFASGKVRSAFSLDGADDYAEAADSDSLSVTGSLTVDAWISLSAYPTAGT
                     EAPIVSKGNTLGGATEGSYSLSVDNLGFLRMCIWSGDVSKCVTASNQIPLNTFTHVAG
                     VFNSLTQQLHAYHGNNTGTSSTGVSAIDDSGEPLLIGAGDVGISGATSRQFFAGFIDE
                     VEVFSRALSFSEFNDITRADNVGKCAADLVVSSPFPEGPAFVGDQVETTITIVNQGNA
                     TAQDVILTDTLPAGFEVVNVSPSGGVICSTAANVVTCELGDMLPNVSFLNVSITAEAT
                     AQGVLTNSAHAESPSPDLKPGNDKLSEAITIVGVKSVTLTTPSATGGCSGTGATVAGT
                     VTFNRPAPRDGTLTLGSSNNGAASPTDTSVSFLAGATTVPFTVSLGTVTSSTQVAITA
                     TLDTGAPGGSTTLTVKPIQILSFVLASNSVTGGNSVNGTVTLTCAPAAGTTVGLSTNR
                     PSVTAITPSPFAVGPDTSSGSFTINTNPVASPTTATITATLNGKSFTQKLTINP"
     gene            3662..>3997
                     /locus_tag="VD968_10385"
     CDS             3662..>3997
                     /locus_tag="VD968_10385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14836.1"
                     /translation="MCKAVKVSKSWRLVVALSLVAAAAIAGQRSGAGASVKSKREKPA
                     AGAAPKMLKVDLNKAVKVDLKVTEDLKPAAFKTADGRTGWAVRIPGGRPIATPAYAGG
                     TLFVGGGYGS"
BASE COUNT          715 a         1361 c         1259 g          662 t
ORIGIN      
        1 tgagggccat gaagaggcgg ggcatgatgg ggaagtggta gttcatgtgg aactcgtcgc
       61 cgccgccgaa gtactcgacc acgtcctcgg gccactggtt ggcctcgccg agcagcatga
      121 cgttcctgaa cttcgagtcg atgtgggcgc gcagcagctt gacgaagtcg tgcgtctcgc
      181 gcaggttctc gcagttcgtg ccctcgcgct cgtagaggta ggggacggcg tccacgcgga
      241 agccgtcgat gcccatctcc agccagaagt ccaccacgtc gaacatcgcc tggtggacct
      301 ccgggttgtc gtagttgagg tcgggctcgt ggctgaagaa gcggtgccag tagaagcttt
      361 gggcctgctc gctccaagtc cagttcgact tctccgtgtc tgtgaagatt atgcgagcct
      421 ccgcgtacct gttcgggtcg tcgctccaga cgtaccagtc gcgcttgggc gaatcgggcg
      481 aggagacggc ctccaggaac caggggtgct ggtcggaggt gtggttgatg acgaggtcgg
      541 tgatgacgcg tatgccgcgc gcgtgggcgg cgtcgaggaa ctccttgaag tcctcgaccg
      601 tgccgtactc gggcagtatc gagtagtagt cggcgatgtc gtagccgccg tcgcgcaggg
      661 gcgactggta catcggcagc agccagaggc agtccacgcc cagccattcg aggtagtcga
      721 gcttctcggt gaggccgcgg aagtcgccta tgccgtcgcc gttcgagtcg tagaagccgc
      781 gcacatagac ttcgtagaag accgcgtcct tgtaccagag ggggtcgtcg cgcagattcc
      841 ccgtctcggc catgcccttc gcccgccttt ccctttcgcg tcgtgttgct tttgcctgca
      901 agatagcggg aaggcggcag ggaatgcaag gaggcagtcg ggggccgggg cggctggaca
      961 aaagtccgat tatcgtttat tttctcaccc tcgatactgc aggggttgcc gccgaccctc
     1021 gcgaccaccg gcgcaatcgc ttcgattgca aaaccctttc accttccagc caaccaagcc
     1081 gacggagaat tagcatgccc gcactctcgg attacgcccc ggcgaagctt aaagcctcgc
     1141 tcgcccgcgc cgccttcacg gcccttctgg cgctcgccgc cctcatcgct acggcgcccg
     1201 gcgccctcgc tcagcacaac acgccgacta ttaacggcac catctcggcc ggcgagtacg
     1261 gcgaccacgc cgagggcatg aaccagaagg cgaccggcag cggccagacc tggtacatga
     1321 cctgggacaa cacgaacctc tacgtcgccg tcacgaacgc caacttgggc caaggggtcg
     1381 tcctctacat agacctcgag ccgcagacgg ccccgcgcac gtgggacaac aacaccaaag
     1441 gcaacctcac cggcgtcgcc tacgacggcg ctaacttctc gccgctgccg ttcctcgccg
     1501 acttcgtcgc ctacttcaag gacggctacc aggagtgccg ccgcaaggac aacgcgggcg
     1561 gctggacttc ggcgaccgcg ccctgcggca cttacctgag cggcgcgggc gacgtgcgcg
     1621 agctggcgat accgtggagc gccatcaggg gcaacacctc cgtccgcccg ctagagttca
     1681 acttcttcgg ctatgccgtc tcacacgacg gcttcgtgta cgggcagatt ccccagggga
     1741 accccgtcgg caacgtcggc acttcggcca cggccgaccg cttctaccgc gtgcgcaata
     1801 cggggaacgg cacgagcacc gagcccttct cgtcggagta cggcaactgc gtggcgcccc
     1861 cgtccgacct tgaggcctgg tggactggca acggctaccg cgacgacata cagggctcga
     1921 accacctgac gttgcagaac ggcttgacgt tcgcctccgg caaggtgcgc tccgccttct
     1981 cgctcgacgg ggcggacgac tacgccgagg ccgccgacag cgactcgctg agcgtcacgg
     2041 gctcgctgac cgttgacgcg tggatcagcc tctcggccta cccgaccgcc ggcaccgaag
     2101 cccccatcgt gtcgaagggg aatacgctgg gcggggcgac ggaggggagt tacagcctga
     2161 gcgtggacaa cctcggcttt cttaggatgt gcatctggtc gggcgacgtt agcaaatgcg
     2221 tcaccgccag caaccagata cccctgaaca ccttcacgca cgtcgccggc gtctttaaca
     2281 gcttgaccca gcagctgcac gcttatcacg gcaacaacac ggggacgtcg agcaccggcg
     2341 tctcagcgat tgacgacagc ggcgagccgc tgctcattgg cgccggggac gtggggattt
     2401 ccggcgctac ctcaaggcag ttcttcgctg gcttcataga cgaggtcgaa gtcttcagcc
     2461 gcgccctcag cttctcggag tttaacgaca tcacccgcgc cgataacgtc ggcaagtgcg
     2521 ccgcagacct cgtggtctcc tcgcccttcc ccgaaggccc cgcgttcgtg ggcgatcagg
     2581 tggagaccac aatcaccatc gtcaaccagg gcaacgccac ggcccaggac gttatcctga
     2641 ccgacacgct gccggccggc ttcgaggtcg ttaacgtctc gcccagcggc ggcgtcatct
     2701 gctcgaccgc cgccaacgtc gtgacgtgcg aattaggcga catgctcccc aacgtttctt
     2761 tcttaaacgt gtccatcaca gcggaggcca cggcgcaggg cgtgctcacg aactccgcgc
     2821 atgccgagag cccctcgcca gacctgaagc cgggcaacga caagctctcc gaggcgataa
     2881 cgatcgtcgg cgtcaagagc gtcaccttaa cgacgccctc cgcgacgggc ggctgctccg
     2941 gcacgggcgc gaccgtggcc ggcacagtca ccttcaaccg ccccgccccg cgcgacggca
     3001 cgctgacact tggcagcagc aacaacggcg cggcgtcccc gaccgacacg tccgtctcgt
     3061 tcctggcagg cgcaacgacc gtgcccttta cagtctcgct cggcacggtg acttcgagca
     3121 cgcaggtcgc cataaccgcc acgctcgaca ccggcgcgcc cggcggctcc accacgctca
     3181 ccgtcaagcc gatacagatt ctgagcttcg tgctcgcctc gaacagcgtg acgggcggca
     3241 acagcgtcaa cggcaccgtg acgctcacgt gcgcgccggc cgccggcacg accgtcgggc
     3301 tctcgaccaa caggccgagc gtgacggcga taacgccgtc gccgttcgcg gtcggccccg
     3361 acacctcgtc gggcagcttc accatcaaca ccaaccccgt cgcctcgccg acgacggcga
     3421 ccatcacggc gacgctaaac ggcaagtcgt tcacgcagaa gctcaccatc aacccgtagc
     3481 cgcggcgggc gcacttccgc ctctcaagcc ttgcggggcg ccgagactcg aaagagttcc
     3541 ggcgccccgc aagttttttc gccgcgcgca ttctaaggtc gaagcgaagc gggtctcccc
     3601 cgtcaaagaa attttatgcg gcgcgcccct cctcgcgggg gcttaagcgg aggtgtgtgt
     3661 gatgtgtaaa gctgtaaagg tgtcgaagag ttggcggttg gtggtcgcgc tgtcgctcgt
     3721 cgcggcggcc gcgatcgccg ggcaacgctc aggcgcgggg gcgagcgtga agtcgaagcg
     3781 cgagaagccg gccgcggggg cggccccgaa gatgttgaag gtggacttga acaaggcggt
     3841 caaggttgac ttaaaggtta cggaagattt gaagccggcc gccttcaaga ccgcggacgg
     3901 ccgcacgggc tgggccgtgc gcatccccgg cgggcgcccc atcgccacgc cggcctacgc
     3961 gggcggcacc ctcttcgtcg gcggcggcta cggctcg
//
LOCUS       DASPKR010000382         3110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1864266, whole genome shotgun sequence.
ACCESSION   DASPKR010000382 DASPKR010000000
VERSION     DASPKR010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3110)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3110
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1864266"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..168)
                     /gene="rpmJ"
                     /locus_tag="VD968_10390"
     CDS             complement(55..168)
                     /gene="rpmJ"
                     /locus_tag="VD968_10390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HYE14837.1"
                     /translation="MKVRASVKKMCDNCKIIHRKGVVRVICTNPKHKQRQG"
     gene            complement(199..420)
                     /gene="infA"
                     /locus_tag="VD968_10395"
     CDS             complement(199..420)
                     /gene="infA"
                     /locus_tag="VD968_10395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HYE14838.1"
                     /translation="MAKEEAIEVMAKVIETLPNAMFRVELEESKHQVLAHVSGKMRKN
                     FIRILPGDRVLVELSPYDLNRGRITYRYK"
     gene            complement(518..1300)
                     /gene="map"
                     /locus_tag="VD968_10400"
     CDS             complement(518..1300)
                     /gene="map"
                     /locus_tag="VD968_10400"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR00500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HYE14839.1"
                     /translation="MIIGKSRKELEKMRAAGRLVAQVREELRRMARPGVTTLELDMAA
                     EKMIRDAGALPTFKGYHGFPFSICASVNEQVVHGFPSTYALQEGDIFSVDVGATLGGF
                     VGDTATTVPIGQVSEDRLKLIRVTEECLERAINECRPGRHLGDIGWAVQSHAESYGYG
                     IVREYVGHGIGRRMHEDPQIPNYGKPGTGPKIKAGYVFALEPMINMGTHRTRTLSDGW
                     TVVTIDGQPSAHVEHTVAVTEEGPEVLTRLAEPAAQADGVGV"
     gene            complement(1333..1989)
                     /locus_tag="VD968_10405"
     CDS             complement(1333..1989)
                     /locus_tag="VD968_10405"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: protein motif:HMM:NF001381.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HYE14840.1"
                     /translation="MSKIIVLMGAPGAGKGTQARLLQERLGLPQISTGDMFRALKNSD
                     SPLADEVRRILASGALVPDDLTIRIVQERTAREDCRSGYVLDGFPRTTPQAEMLEGLA
                     AGQGHELLAVLVDVPFDVLEKRVTGRRSCPVCGEIYNIYFKPPKAEGACDLHPEARLK
                     QRADDNAETIKARLATYERDTRPLLDYYERTGRLRRVEGTRDAEAIYADVEKIVKGRE
                     "
     gene            complement(2036..>3110)
                     /gene="secY"
                     /locus_tag="VD968_10410"
     CDS             complement(2036..>3110)
                     /gene="secY"
                     /locus_tag="VD968_10410"
                     /inference="COORDINATES: protein motif:HMM:NF012564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HYE14841.1"
                     /translation="QYTRYLTVVLCLFQTFIVARWLQANDVIEASWGAVAMITVTLTT
                     GTIFVMWLGEQITERGIGNGISLLIFAGIVIGLPSGVQQVFAKLRSGDTFAVIGVIAL
                     VILLLALIAFIVFVETARRKVPISYAKRHVGRQLVGGQQTHMPIKINMGGVIPVIFAS
                     SVLAIPQTVLQFFQPDTSNPNSFLMRVHTFFQSFHGGDPYYELLFASLIVLFTFFYIT
                     IIFNVEEVSDNLRKHGGFIPGIRPGRNTAEFLNTILTRLTTVGAVYLALVALIPQVML
                     SGFNVGRLPFVGARLDEFVTGTPGLGWIPHGMGYQFYFGGTSLLILVGVAMDTAQQIE
                     AQLVMRNYEGFFGPGSRLRGRRG"
BASE COUNT          539 a          984 c          992 g          595 t
ORIGIN      
        1 tagaacggtt ttcgatgatt tcaaatttgc catttcaaat ttgaaatttc agagttaccc
       61 ctggcgctgc ttgtgcttgg ggttcgtgca gatcacgcgc accacgccct tgcggtggat
      121 gatcttgcag ttgtcgcaca ttttcttgac cgaagccctg accttcattg ctacctcgcc
      181 ctccccggga gacctgcctc acttgtagcg gtacgttatc cgcccccggt tcaaatcgta
      241 cggcgaaagc tccaccaaaa ccctgtcgcc cggcagtatg cgtatgaagt tcttccgcat
      301 ctttcccgag acgtgcgcca gaacctggtg tttgctctcc tcaagctcga cgcggaacat
      361 cgcgttgggg agagtctcga tgactttagc catcacctca atcgcttctt ctttcgccat
      421 accctgtaaa acaaactcgg gtgaaaaatc gaagcggctg gcaaactgcg aataataaca
      481 cacttaccgc cgggctccaa gccgcggctg gcgcgtctca aacccctaca ccgtcggcct
      541 gcgcggccgg ctctgcaagg cgcgtaagaa cctccggccc ctcctccgtg acggcgaccg
      601 tgtgctcgac gtgggcgctc ggctgcccgt ctatggtgac gaccgtccag ccgtccgaca
      661 gagtcctggt gcggtgcgtc cccatgttta tcatcggctc cagggcgaag acgtagccgg
      721 cctttatctt ggggccggtg ccgggcttcc cgtagttcgg tatctgcggg tcttcgtgca
      781 tgcggcggcc tatgccgtgg ccgacgtact cgcgcacgat gccgtagccg taagattcgg
      841 cgtgcgactg cacggcccag ccgatgtcgc ccaggtgcct gcccggccgg cactcgttga
      901 ttgcgcgctc caggcattcc tcggtgacgc gtatcagctt gagcctatcc tcgctcacct
      961 gaccgatggg gacggtcgtc gccgtgtcgc cgacgaagcc gcccagcgtc gcgcccacgt
     1021 ccaccgagaa gatgtcgccc tcctggaggg cgtaggtcga ggggaagccg tggacgacct
     1081 gctcgttgac cgaggcgcag atggagaagg ggaagccgtg gtagcccttg aaggtcggca
     1141 gggcgccggc gtcgcgtatc atcttctcgg ccgccatgtc gagctcgagc gtggtgacgc
     1201 cgggccgcgc catgcgccgc agctcctcgc gcacctgcgc gactagccgg ccggcggccc
     1261 tcatcttctc aagctctttc ctagacttcc cgataatcat cgtagtggag agttaagacg
     1321 gcttccttct cgtcattcgc ggcccttcac aatcttctca acgtccgcgt agatcgcctc
     1381 agcgtcgcgc gtgccttcga cgcggcggag gcgccccgtg cgttcgtagt agtcgagcag
     1441 cgggcgcgtg tcgcgctcgt atgtggcgag ccgagccttg atggtctcgg cgttgtcgtc
     1501 cgcgcgctgc ttgagccgag cctcggggtg gaggtcgcag gcgccctctg ccttcggcgg
     1561 cttgaagtag atgttgtaaa tctcgccgca gacggggcaa ctacggcggc ccgttacgcg
     1621 cttctctaaa acgtcgaacg gcacgtcaac tagcacggcc agaagctcgt ggccctgccc
     1681 ggcggccagg ccttcgagca tctcggcctg cggcgtcgtg cgcgggaagc cgtcgaggac
     1741 gtagcccgag cggcagtctt cgcgggccgt gcgctcctgc acgatgcgta ttgtcaaatc
     1801 gtcggggacg agggcgcccg acgcgagtat gcgccgcacc tcgtcggcca gtggcgagtc
     1861 ggagttcttc agggcgcgga acatgtcgcc cgtagaaatc tgcggcaggc ccaggcgctc
     1921 ttgcagcagc cgcgcctgcg tccccttccc cgcccccggc gcccccatca ggacgattat
     1981 cttcgacata agttagagac tagaggctag gggctggtta ctgctagccc ctagcttacc
     2041 ctctgcgccc gcgcaggcgg ctgcccggcc cgaagaagcc ctcgtagttg cgcatcacta
     2101 gctgggcctc aatctgctgg gccgtgtcca tcgcgacgcc tactagaatc aggagcgacg
     2161 tgccgccgaa gtagaactgg tagcccatgc cgtgcggtat ccaccccaag cccggcgtcc
     2221 ccgtgacgaa ctcgtcgagg cgcgcgccga cgaacggcag gcggccgacg ttgaagccgc
     2281 tcagcatcac ctgcgggatg agcgcgacga gcgcgagata gacggcgccc acggtagtca
     2341 gccgcgtcag aatcgtgttc aggaactcgg cggtgtttcg gccgggccgt atgccgggga
     2401 tgaagccgcc gtgcttgcgg aggttgtccg acacctcttc gacgttgaag atgatcgtga
     2461 tgtagaagaa ggtgaacagc acgatgagcg acgcgaagag cagctcgtag taggggtcgc
     2521 cgccgtggaa cgactggaag aaggtgtgca ccctcatcag gaacgagttc gggttgctcg
     2581 tgtcgggctg gaagaactgc aagacggtct gcggtatcgc cagcaccgac gaggcgaaga
     2641 tgacggggat gacgccgccc atgtttatct tgatgggcat gtgcgtctgc tgcccgccga
     2701 cgagctggcg cccgacgtgg cgcttcgcgt aggagatcgg caccttgcgg cgcgcagtct
     2761 cgacgaagac gatgaaggct atgagcgcca gcagcagtat gacgagcgcg atgacgccga
     2821 tgacggcgaa cgtgtcgccg ctgcggagct tcgcgaagac ctgctgcacg ccgctcggca
     2881 gacctatgac gataccggcg aagatgagga gtgagatgcc gttgccgatg ccgcgctcgg
     2941 ttatctgctc gcccagccac atgacgaaga tggtgccggt cgtcagcgtg acggttatca
     3001 tcgcgacggc gccccacgat gcctctatca cgtcgttggc ctggagccag cgggcgacga
     3061 tgaaggtctg gaacaggcag agcaccacgg tcaggtagcg ggtgtactgg
//
LOCUS       DASPKR010000383         8392 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1346815, whole genome shotgun sequence.
ACCESSION   DASPKR010000383 DASPKR010000000
VERSION     DASPKR010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8392)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8392
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1346815"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..978
                     /locus_tag="VD968_10415"
     CDS             <1..978
                     /locus_tag="VD968_10415"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE14842.1"
                     /translation="MAAAPKELADAFAYFNSAASREALAADARKAAGMIRDGRHPAGG
                     NSFIKVGSYMAARLKEKNGAAGYEKYYRAGAIPFFADYVRLYKSGAASVPKELRFTPS
                     FERLIERWESDWARTWNDYTRSVVLTQATDFGAVGARLRKEFAGAEVYPDFTRELQPI
                     QQGVAALHAAKLGVDLYPHSDELLFNWAYFMIITEQSEAGREALRRIAPDRERPVVYF
                     RRAFESNPSGVMSARTFLDLGGRWLRRPEMTEAGFEFVSAGVELHPKEAALHDMLGDF
                     LLRKGQRERAAESYRKALELDPKLSKGAALGEYVERKAEAAAAAAKAKR"
     gene            989..4273
                     /locus_tag="VD968_10420"
     CDS             989..4273
                     /locus_tag="VD968_10420"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYE14843.1"
                     /translation="MQKLAEVCIRRPVFAAMLILSLVVVGAASYFRLGVDRFPSVDLP
                     TVSVRTTLPGASAEEMETLVSQPVEEVVNTVDGIDELRSISGAGTSLVIATFKLDRDL
                     ETAAQDVRDRVATVVRRLPEDIQPPVVQKFNNDSSPVMTLALSGERSLRELTELGDKI
                     ARVQFERVGGVGEVSVVGGIQRAINVWIDADRLAAYQIPITAVQQALARQNADIPGGN
                     VTTGRQELVLRTMGRFTDPREFNELVVANVGGSPVRLRDVGRVEDGTKEQRSLARLNG
                     VPTVQLQIRRQSGANTIEVINGVKAAMPRVAAQLPEDVKFEVIRDQSRYIEAALHEIQ
                     VHLVLGSILACGVVLLFMRNWRSTLIAGVAIPASVISTFAMMEALDFTLNSVTMLALV
                     LMVGVVIDDAIVVLENIFRFVEEKKMSPMEAAREATADIGLAVMATTLSLVVIFLPVS
                     FMSSISGRFLYQFGITAAVAIMVSLLVSFTLTPMMSSRLLRSSDAGGHGHGGEAASRK
                     GFYSWIDRGYTRLLKFSMRHRLAVSAFALLVVASSVPLYGAVKQEFIPSNVDEAEFEV
                     SVSAPEGTNLASMNEAMLVIENEVARTPGVRMVLSSAGGGFLGGVNQGDIYVRIAPHE
                     ERMLSFTRVWHELLEGNPLNAFRGNYTQQDVMTEVRRRLRKYAPLRAGVRNVTSFNFG
                     GGRTDIDFNLRGPELGELVRYAEDLRERSEKVGGIVDADTSLKLNKPELRVEIDRERA
                     ATLGVNTSDIANSLRVMVGGDEEATRYHDASVNEAYDVQLRLTERDRNDPRILGQLYV
                     PSSRGGLVRLDNLVKVRRDTAPSRIDRLDRQRQVSVRASVAPGYALADRIEALRAEVA
                     RMNLPAAYTTAISGRGRELERTFYEFIWAFLLSVIFMYMILASQFESTIHPVTILLSL
                     PLAVPFALLSQWATGDTLNLYSALGILVLFGVVKKNSILQIDHMNNLRAKGWERGEAI
                     IQGNRDRLRPILMTTLALVAGMLPLALGTGPGAEERRSIAVVVIGGQTLSLLLTLLVT
                     PVAYSVFDDIGSTAWWRSSFGRAAALPGRAAAGARAAFARRRATEGDEPEANAPGARE
                     AGAGGD"
     gene            complement(4288..5385)
                     /locus_tag="VD968_10425"
     CDS             complement(4288..5385)
                     /locus_tag="VD968_10425"
                     /inference="COORDINATES: protein motif:HMM:NF042824.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14844.1"
                     /translation="MKPPAGFVWLDSPFEGAIAATAMQPAQEPVFDRLLGGLREVALE
                     SDPPPGAPEFARVRELCERAARAVRRHLRALFPERRRYDEYWDKWHDVEPGPGAYTTE
                     RLKSEVLTKLGEKMAPQTPRAMRPRVWRRSLEIFRATATAEKMLEHPFRLMRNLEDCG
                     RGTHDAGWLARCEQLTSASGGVGDAQALAALFELSREAGWWWPMRRIAILTERPTAVG
                     CDESGRLHSGTGPALAYRDGLEFYAWRGTEVPPEIIKGRERMTVRTIDDEWNVELRRV
                     LIELYGAERFLLDGNARVIDEGELGTLYLRDMDGDEPLVMVKVRNSTPEPDGSHKDYF
                     LRVPPNVKTAREAVAWTFGLEASGYEPSVET"
     gene            complement(5539..5901)
                     /locus_tag="VD968_10430"
     CDS             complement(5539..5901)
                     /locus_tag="VD968_10430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14845.1"
                     /translation="MAERKRQYRQGDVFLESFDGEVKSLPHKVVPRDGGRVILAYGEA
                     TGHAHAVEEAEAELIELESGERFLVTPRGISLRHEEHDTIHLPPGTYRVVRQREYVPP
                     LPGDEEDDEGEDSRYVLD"
     gene            6058..8277
                     /locus_tag="VD968_10435"
     CDS             6058..8277
                     /locus_tag="VD968_10435"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HYE14846.1"
                     /translation="MANRLVGRPVPRKEGREKVTGAARYADDLSMPGMLHGATVRSPA
                     ARGRVREIVFGDGVPWDEFTVVTAADIPGKNAVALILLDQPYLADGVVNHPEEPVVLL
                     AHEDKHLVEEARRLVRVEVEPLPAVFTIEESLEKKEVVWGEDNVFKSFLVEKGNVDDV
                     WDEADFIVEGEYRTGAQEHLYIETNGALAVANPRTGVTVWGSMQCPYYVHKALVKLFD
                     LPEDKIRVVQTETGGGFGGKEEYPSMIAGHAALLAWKSGRPVKIIYDRAEDMTATTKR
                     HPSRTRHRTAVTRDGKLLGMEIDFVVDGGAYATLSSVVLSRGTIHAAGPYSCPNVRIK
                     SRAVATNAPPHGAFRGFGAPQSIFALERHMDKVAAAVGLSPEEFRRRNFIRRGETTAT
                     GQVIREDVDLAALLDRAFELSDYRAKRERFSRENPTGRVKRGIGFATFMHGAGFTGSG
                     EQFLQSVVGCEATSEGRVRVLAASTEIGQGTNTVFAQIAADALGLDFDRVEVCRPDTG
                     NVPNSGPTVASRTCMIVGKLVESAALGLKQSLVAAGLLGEPYTQDDFERACREHLATR
                     GPLKTFSQYAQPEDIRWDDEKYRGDAYGAYAWAAYVAEVSVDAVTYEARVEDFVAVQE
                     VGRVIHPVLAAGQIEGGVAQGIGFSLYESVAWRGGVMANGQMTNYIIPTSADIPPIRV
                     DFAENPYERGPAGAKGIGELPMDGPAPAILNAIEHATGVAFNFVPLMPEDLMEALEG"
BASE COUNT         1349 a         2903 c         2820 g         1320 t
ORIGIN      
        1 atggcggccg cccccaagga gttggccgac gccttcgcct acttcaactc ggccgcgagc
       61 cgcgaggccc tcgccgccga cgcgcggaag gccgccggga tgatacgcga cgggcggcac
      121 cccgcgggcg gcaacagctt catcaaggtc ggctcctaca tggccgcgag gctcaaagag
      181 aagaacggcg cggccggcta cgagaagtat tacagggcgg gcgccatccc cttcttcgcg
      241 gactacgtgc ggctgtacaa gtcgggcgcg gcctccgtgc cgaaggaact tcgcttcacg
      301 ccctctttcg agaggctcat agagcgctgg gagtcggact gggcgcgcac ctggaacgac
      361 tacacgcgct ccgtcgtgct cacgcaggcg accgacttcg gcgcggtcgg cgcgcgcctc
      421 aggaaggagt tcgcgggcgc ggaagtctat cccgacttca cgcgcgagtt gcagccgata
      481 cagcagggcg tggcggcgct gcacgcggcc aagctcggcg ttgacctcta cccgcactcc
      541 gacgagctgc tcttcaactg ggcctacttc atgatcatca ccgagcagtc ggaggccggg
      601 cgcgaggcgc tcaggcggat agcccccgac cgcgagcggc cggtcgtcta tttccgccgc
      661 gccttcgagt cgaacccctc gggcgtgatg agcgcgcgga ctttcttgga cctcggcggg
      721 cgctggctcc gccggcccga gatgacggag gccggcttcg agttcgtgag cgcgggcgtc
      781 gagcttcacc cgaaggaggc ggcgctgcac gacatgctcg gcgacttcct cctgcgcaag
      841 ggccagaggg agcgggccgc cgagtcgtac cgcaaggccc tggagttaga cccgaaactg
      901 tcgaagggcg cggcgctcgg ggagtacgtc gagcgcaagg ccgaggcggc ggccgccgcg
      961 gcgaaggcga aacggtaagg tttaagtcat gcaaaagctc gctgaagttt gcatcaggcg
     1021 cccggtcttc gcggcgatgc tgatcctgtc gctcgtcgtc gtgggcgcgg cgagctattt
     1081 ccgcctcggc gttgaccgct tcccgtccgt tgacctgccg acggtgagcg tccgaaccac
     1141 gctgcccggc gcgtcggccg aggagatgga gacgctcgtc tcgcagcccg tcgaggaggt
     1201 cgtcaacacc gttgacggca tagacgagct gcgctcgatc tcgggcgcgg gcacttcgct
     1261 cgtcatcgcc accttcaagc tcgaccgcga cctggagacg gccgcgcagg acgtgcgcga
     1321 ccgcgtcgcg accgtcgtgc gccgcctccc cgaggacata cagccgccgg tcgtgcagaa
     1381 gttcaataac gacagctcgc cggtgatgac gctcgcgctc tcgggcgaac gctccctgcg
     1441 cgagctgacg gagctgggcg acaagatcgc acgcgtgcag ttcgagcgcg tcggcggcgt
     1501 gggcgaggtg agcgtcgtcg gcggcatcca gcgcgccata aacgtctgga ttgatgccga
     1561 ccgcctcgcc gcgtaccaga tacccatcac ggccgtgcag caggcgctcg cgcgccagaa
     1621 cgcggacatc cccggcggca acgtcacgac gggccggcag gagctcgtgc tgcgcacgat
     1681 gggccgcttc acagacccgc gcgagttcaa cgagctcgtc gtcgcgaacg tcggcggctc
     1741 gcccgtgcgc ctgcgcgacg tgggccgcgt cgaggacggg acgaaggagc agcgctcgct
     1801 cgcgcgcctg aacggcgtgc cgaccgtcca gctacagata cggcggcagt cgggcgccaa
     1861 caccatcgag gtcatcaacg gcgtgaaggc cgcgatgccg cgcgtggcgg cgcagctccc
     1921 ggaggacgtg aagttcgagg tcatccgcga ccagtcgcgc tacatcgagg ccgcgctcca
     1981 cgagattcag gttcacctgg tcctgggcag catactcgcc tgcggcgtcg tgctgctctt
     2041 catgcgcaac tggcgctcaa cgctaatcgc gggcgtcgcc atcccggcct ccgtcatctc
     2101 gaccttcgcc atgatggagg cgctcgactt cacgctcaac agcgtgacga tgctcgcgct
     2161 cgtgctgatg gtgggcgtcg tgattgacga cgcgatagta gtcctcgaga acatcttccg
     2221 cttcgtagag gagaagaaga tgtcgccgat ggaggcggcg cgcgaggcca cggccgacat
     2281 cggcctagcc gtcatggcga cgacgctttc gctcgtcgtc atcttcctgc ccgtctcgtt
     2341 catgtcgtcc atctcgggcc gcttcctcta ccagttcggc atcacggcgg ctgtggcgat
     2401 aatggtgtcg ctgctggtct cgttcacgct gacgccgatg atgtcgtcgc ggcttctgcg
     2461 ctcgagcgac gccggggggc acggccacgg cggcgaggcc gcctcgcgaa agggctttta
     2521 ctcgtggatt gaccgcggct acacgcggct gctgaagttc tcgatgcgcc acaggctggc
     2581 cgtctcagcc ttcgccctgc tcgtcgtggc ctcgagcgtg ccgctctacg gcgcggtcaa
     2641 gcaggagttc ataccaagca acgttgacga ggccgagttc gaggtctccg tcagcgcgcc
     2701 cgaggggacg aacctcgcct cgatgaacga ggcgatgctc gtcatcgaga acgaagtggc
     2761 gcgcacgccc ggcgtccgaa tggtgctctc ttcggcgggc ggcggcttcc tcggcggcgt
     2821 taaccagggc gacatatacg tgcgcatcgc gccgcacgag gagcgcatgc tctcgttcac
     2881 gcgcgtctgg cacgagctgc tcgaaggcaa cccgctgaac gccttccgcg gcaactacac
     2941 gcagcaggac gtgatgaccg aggtgcgaag gcgcctccgc aagtacgcgc cgctgcgcgc
     3001 gggcgtgcgc aacgtgacct cgttcaactt cggcggcggc cgtaccgaca ttgacttcaa
     3061 cctgcgcggc cccgagctcg gcgagctcgt ccgctacgcc gaagacctgc gcgagcgctc
     3121 cgagaaggta ggcggcatcg ttgacgcgga caccagcctg aagctcaaca agccggagct
     3181 tcgcgtcgag attgaccgcg agcgcgcggc cacgctcggc gtcaacacgt ccgacatcgc
     3241 caacagcttg cgcgtcatgg tgggcggcga cgaggaggcc acgcgctacc acgacgcctc
     3301 ggtgaacgaa gcctacgacg tgcaactgcg actgaccgag cgcgaccgca acgacccgcg
     3361 catactcggc cagctatacg tcccttcgtc gcgcggcggg ctcgtgcgcc tcgacaacct
     3421 cgtgaaggtc aggcgcgaca ctgcgccgtc gcgcatagac cgcctcgacc gccagcggca
     3481 ggtgtcggtg cgcgcgtcgg tcgcgcccgg ctacgcgctg gcagaccgca tcgaagcgct
     3541 cagggcggag gtcgcgcgca tgaacctgcc ggccgcgtac acgaccgcca tctcgggccg
     3601 cggccgcgag cttgagcgca ccttctacga gttcatctgg gcgttcctgc tctcggtcat
     3661 cttcatgtac atgatcctgg cctcgcagtt cgagagcacc atccacccgg tcacgatact
     3721 gctgagcctt ccgctcgccg tcccgttcgc gctgctctcg cagtgggcta cgggcgacac
     3781 cttaaacctc tactcggcgc tcggcatact cgtcctgttc ggcgtggtga agaagaactc
     3841 gatcctacag attgaccaca tgaacaacct tcgggcgaag gggtgggagc gcggcgaggc
     3901 catcatacag ggcaaccgcg accgactgcg gccgatcctt atgacgacgc tcgcgctcgt
     3961 cgcaggcatg ctcccgctcg ctctggggac ggggccgggc gcggaggagc ggcgctccat
     4021 cgccgtcgtc gtcatcggcg gtcagacgct ctcgctcctg ctgacgctgc tggtgacgcc
     4081 ggtcgcctac tccgtcttcg acgacatagg ctcgaccgcg tggtggcgct cctccttcgg
     4141 ccgcgcggcg gcgctgcccg gccgcgccgc cgcaggggct cgggctgcct tcgcacgcag
     4201 gcgcgcgacg gaaggcgacg agccggaggc taacgccccc ggcgcgcgcg aggccggcgc
     4261 gggcggcgac tgaggcggcc gccgctttca ggtctcgacc gagggctcgt agccggaggc
     4321 ttcgaggccg aacgtccatg cgacggcctc ccgcgcggtc ttcacgttcg gcgggacgcg
     4381 gaggaagtag tccttgtgcg agccgtcggg ctcgggcgtc gagttgcgaa ccttcaccat
     4441 cacgagcggc tcgtcgccgt ccatgtcgcg caggtagagc gtgccgagct cgccctcgtc
     4501 tatcacgcgc gcgttaccgt cgagcaggaa ccgctccgcc ccgtacagct ctatgagcac
     4561 gcgccgaagc tccacgttcc actcgtcgtc aatcgtcctg acggtcatcc gctcacgccc
     4621 cttgattatc tcgggcggca cctccgtccc gcgccacgcg tagaactcga ggccgtcccg
     4681 gtaggcgagc gccggccccg tgccgctgtg caggcgcccc gactcgtcgc agcccacggc
     4741 cgttggcctc tcggtcagga tggcgattct gcgcatcggc caccaccagc ccgcctcccg
     4801 gctcagctcg aagagcgcgg cgagggcctg cgcgtctccg acgcccccgc tcgccgacgt
     4861 cagttgctcg cagcgcgcca gccagcccgc gtcgtgcgtc ccccggccgc agtcttcgag
     4921 gttgcgcatc agccggaaag ggtgctctag catcttctcg gcagtcgcgg tcgcgcggaa
     4981 aatttcgagc gaccttcgcc agacccgcgg cctcatcgcc cgcggcgtct gaggcgccat
     5041 cttctcgccg agcttagtga ggacttccga ctttagccgc tccgtcgtgt aagcgccggg
     5101 gccgggctct acgtcgtgcc acttgtccca atactcgtcg tacctgcgcc tctcggggaa
     5161 gagcgcgcgg aggtgccgcc gcacggccct cgccgcgcgc tcgcaaagct ctcgcacgcg
     5221 ggcgaactcg ggcgcgccgg gcggcgggtc ggattcgagt gccacttcgc gcagcccgcc
     5281 cagcagcctg tcgaagacgg gctcttgcgc gggctgcatg gcggtcgcgg ctatcgcgcc
     5341 ctcgaagggc gagtcgagcc agacgaagcc ggcgggcggc ttcatcccct tcgccctata
     5401 aagtgcggac agcgcacgct cggccacctc gcggtcgcac ggccccgcgg agagggcgac
     5461 ggagagccac ctgtcggctg tctcacgggg tgaggcgccg ggcgtttggt cgagggggag
     5521 catccttcgg ggtgggtttc agtcgaggac gtagcggctg tcttcgccct cgtcgtcttc
     5581 ttcgtcgccc gggagcggcg ggacgtactc gcgctggcgc acgacacggt aggtgccggg
     5641 cggcaggtgt atggtgtcgt gctcctcgtg gcggagcgag atgccgcgag gggtcacgag
     5701 gaaccgctcg ccgctctcca gttcaatcag ctcggcctcg gcctcctcga cggcgtgggc
     5761 gtggccggtc gcctcgccgt atgcgaggat gacgcggccg ccgtctcgcg gcacgacttt
     5821 gtgagggagc gacttaactt cgccgtcgaa actttcgagg aaaacgtcgc cctgtcggta
     5881 ttgtctcttc cgttcggcca agtctttaat tcctttcggc ggggggcaaa actcttacgc
     5941 gcggcggcgc gcggtgtgct aagcttgccg gcaatgatat tcgagccgcg ccgccggggc
     6001 aaaggcccgc gccggggcgg cgctgaaaat cctacggcgc ggcattcaat ctcgggaatg
     6061 gctaatcgct tagtcggcag gcccgtcccc cgcaaggagg ggcgtgagaa ggtcacgggc
     6121 gcggcgcgct acgccgacga cctctcgatg ccgggtatgc tccacggcgc gaccgtccgc
     6181 agccccgccg cgcgcggccg cgtgcgcgag atagttttcg gcgacggcgt gccttgggac
     6241 gagttcaccg tagtcacagc cgcagacatc cccggcaaga acgccgtcgc gctcatcctc
     6301 ctcgaccagc cgtaccttgc cgacggcgtc gtcaaccacc ccgaggagcc cgtcgtgctg
     6361 ctcgcccacg aggacaaaca cctcgtcgaa gaggcgcgcc gcctcgtccg cgtcgaggtc
     6421 gagccgctcc ccgcagtctt caccatagaa gagtcgcttg agaaaaaaga ggtcgtctgg
     6481 ggcgaggaca acgtcttcaa gtccttttta gtcgagaagg gcaacgttga cgacgtttgg
     6541 gacgaggccg actttatagt cgagggcgag taccggacgg gagcgcaaga gcacctctac
     6601 atcgagacga acggcgccct cgccgtcgcc aacccgcgga cgggcgtcac cgtctggggc
     6661 tcgatgcaat gcccgtacta cgtccacaag gccctcgtca aactattcga cctgccggag
     6721 gataaaatcc gcgtagtgca gaccgagacg ggcgggggct tcggcggcaa ggaggagtac
     6781 ccctcgatga tcgcgggcca cgccgctctg ctcgcgtgga agtcgggccg ccccgtcaag
     6841 ataatctacg accgcgccga ggacatgacg gcgacgacga agcgccaccc ttcgcgcacg
     6901 cgccaccgaa cggccgtcac gcgcgacggc aagctactcg ggatggagat agacttcgtc
     6961 gttgacggcg gcgcctacgc gacgctctct tcggtcgtgc tctcgcgcgg cacgattcac
     7021 gccgccgggc cttactcctg cccgaacgtg cgcatcaagt cgcgcgccgt ggcgacgaac
     7081 gcgccgccgc acggcgcctt ccgcggcttc ggcgcgccgc agagcatatt cgcgttagag
     7141 cgccacatgg acaaggtcgc cgcggccgtc gggctctcgc ccgaagagtt ccgacgccgc
     7201 aacttcatac ggcgcggaga gacgaccgcc acgggccagg tcatacgcga ggacgttgac
     7261 ctcgcggcgc tgctagaccg cgccttcgag ctctcggatt accgcgccaa gcgcgagcgc
     7321 ttctcgcgcg agaacccgac gggcagggtg aagcgcggca taggcttcgc caccttcatg
     7381 cacggcgcgg gcttcaccgg ctcgggcgag cagttcctgc aatcggtcgt cggctgcgag
     7441 gccacaagtg aggggcgcgt gcgcgtcctc gccgcgagca ccgagatagg gcaggggact
     7501 aacaccgtct tcgcgcagat agccgctgac gcgctcgggc tcgacttcga ccgcgtagag
     7561 gtctgccggc ccgacaccgg caacgtaccg aacagcggcc cgacggtcgc ctcccgcacc
     7621 tgcatgatag tcggaaagct agtcgagtct gccgccctcg gcctcaagca gtcgctcgtc
     7681 gcggccggcc tcctcggcga gccctacacg caagacgact tcgagcgcgc gtgccgcgag
     7741 cacctcgcca cccgcggccc cctgaagacc ttcagccagt acgcgcagcc cgaggacatt
     7801 cgctgggacg acgagaagta ccgcggcgac gcctacggcg cctacgcctg ggccgcatac
     7861 gtcgccgagg tgagcgtgga cgccgtcacc tatgaggcgc gcgtcgagga cttcgtcgcc
     7921 gtgcaggagg tgggccgtgt catacacccc gtgctcgcgg ccgggcagat agagggcggc
     7981 gtcgcgcaag ggataggctt ctcgctctac gagtcggtcg cgtggcgcgg cggcgtgatg
     8041 gcgaacggcc agatgacgaa ctacatcatc ccgacctcgg ccgacatccc gcccatacgc
     8101 gttgacttcg ccgagaaccc ctacgagcgc ggccccgctg gcgccaaagg catcggcgag
     8161 ctaccgatgg acggccccgc ccccgccata ctaaacgcga tagagcacgc gaccggcgtc
     8221 gcgttcaact tcgtcccgct catgccggaa gatctgatgg aagcgctcga aggatgaaga
     8281 cggaagagac gaaagccggg ccgggcaagc tgtcagtcag cttcgaggtg aacggccggg
     8341 aggcgacggt cgaagcctac ccgatggcga ggctgctcga cgtgctgcgc ga
//
LOCUS       DASPKR010000384         2591 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_183838, whole genome shotgun sequence.
ACCESSION   DASPKR010000384 DASPKR010000000
VERSION     DASPKR010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2591)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2591
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183838"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..713
                     /locus_tag="VD968_10440"
     CDS             <1..713
                     /locus_tag="VD968_10440"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HYE14847.1"
                     /translation="PEGMPDEQALFLSDIFPTGYMGAEMCDIKPGDTIAVWGCGPVGQ
                     FAIASARLLGAERVIGIDRFPERLRMARDGAKADDTINYEEQNVHDALMEMTGGRGPD
                     ACIDAVGLEAHGGHGIVYAYDRAKQAVMGETDRPIALREAIMACRNGGTVSVIGVYGG
                     LIDKFPMGSFMNRSLTMRTGQCHVQRYWGQLLERIEKGEIDPGFVITHRMRLDDAPHG
                     FDIFSNKEDDCIKIVLKP"
     gene            complement(810..1730)
                     /locus_tag="VD968_10445"
     CDS             complement(810..1730)
                     /locus_tag="VD968_10445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14848.1"
                     /translation="MTNDLNSYVDVSLTADGSAMVSVQTDRNPNIWVAPGGDAARARQ
                     ITTGAGKFDGFYGVAWMTDGRIIYSSAASGNWELWVMNSDGTGQRQLTVGARSNYGPS
                     ASPDGRYVVFVSNRAGPFNIWRMDADGSNPVRLTSGKGENFPHVTPDGRWVVYATVGF
                     AQRNAVWKVPIDGGDAVALTERPASWPFVSPDGKSFVCTYGPAGPGGPAKLAVVPIEG
                     GEPTKLFDIPPTFRANTVWMPDNRGIAFLDDRSGTNNVWMQPLSGKKPVQLTDFKSDG
                     VAAYDWSRDGRLVATRSVETTGVVLIRDFR"
     gene            complement(1727..>2591)
                     /locus_tag="VD968_10450"
     CDS             complement(1727..>2591)
                     /locus_tag="VD968_10450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14849.1"
                     /translation="GAGRPVRAAVLIALAVLLAAGGLTFLIYRFVLPGHVEPRRQAGF
                     QTMKITRLPVAGTVVTAAVSPDGQYLAYVINENGSASVWVRQVAAASNSQRIVEPSPG
                     VFYFGVTFSPDSSHVYFASVRDGVQQAPSLFRVPVLGGATKKILDELSSPVSFSRDGK
                     QMTFIRGQVMTGTSLVVAPAEGGGEERTLARGKPGSPLVLPAWSPDGDKIACVFASTS
                     NYEVGNPNMGVTSFDVATGAETRLTDERWFNINAMAWLPDGGLVLSAAEQELSPQQIW
                     GLLYPRAKSAA"
BASE COUNT          421 a          875 c          890 g          405 t
ORIGIN      
        1 tccccgaggg gatgccggac gagcaggcgc tcttcctctc cgacatcttc ccgaccggct
       61 acatgggcgc cgagatgtgc gacataaagc cgggcgatac catcgccgtg tggggctgcg
      121 gccccgtcgg tcagttcgcg attgcgagcg cgcgcctgct cggcgccgag cgcgtcatag
      181 gcattgaccg cttccccgag cggctccgca tggcgcgcga cggcgcgaag gccgacgaca
      241 cgatcaacta cgaggagcag aacgtccatg acgctctgat ggagatgacg ggcggccgcg
      301 gccccgacgc ctgcattgac gccgtcggcc tcgaagcgca cggcggccac ggcatcgttt
      361 acgcctacga ccgcgccaag caggccgtga tgggagagac cgaccggccc atcgcgctgc
      421 gcgaggccat catggcctgc cgcaacggcg gcacggtgtc ggtcataggg gtttacggcg
      481 ggctgattga caagttcccg atgggctctt tcatgaaccg cagtctgacg atgaggacgg
      541 gccagtgcca cgtgcagcgc tactggggcc aactgctcga aaggatagag aagggcgaga
      601 ttgaccccgg cttcgtcatc acgcaccgca tgcgcctcga cgacgccccg cacggcttcg
      661 acatcttcag caacaaggaa gacgactgca tcaagatcgt gcttaagccg tagaggcggc
      721 tcggaacggc ctgtcgctaa aagcactggg gaggccccga ctcggggcct ccccagtgct
      781 tttagcttgt cccttggtcg agtcggccgc tagcggaagt ctctgatgag gacgacgccg
      841 gttgtctcga cgctgcgggt agcgacgagg cggccgtcgc gcgaccagtc gtaggcggcg
      901 acgccgtcgg acttgaagtc cgtcaactgc accggcttct tgcccgagag cggctgcatc
      961 cagacgttgt tcgtccccga gcggtcgtcg aggaaggcta tgccgcggtt gtcgggcatc
     1021 cagacggtgt tggcgcggaa ggtcggcggg atgtcgaaga gctttgtggg ctcgcccccc
     1081 tcgatgggga cgacggcgag cttagccggc ccgcccggcc ccgccgggcc gtaggtgcag
     1141 acgaaggact tgccgtccgg cgagacgaag ggccacgacg ccggcctctc cgtcagcgcg
     1201 accgcgtcgc ctccgtcaat cggcaccttc cagacggcgt tcctctgcgc gaacccgacc
     1261 gtcgcataga cgacccagcg cccatccggc gtgacgtgcg ggaagttctc gcccttgccc
     1321 gaggtgagcc gcaccgggtt cgagccgtca gcgtccatgc gccagatgtt gaacgggcct
     1381 gcgcggttcg agacgaagac gacgtagcgg ccgtcgggcg aagcggacgg gccgtagttg
     1441 gagcgcgcgc ccacggtcaa ctgcctctgc ccagtcccgt ccgagttcat cacccaaagc
     1501 tcccagttgc cgctcgcggc cgaagagtag atgatgcgcc cgtccgtcat ccacgccacg
     1561 ccgtagaagc cgtcgaactt gccggcgccc gtggttatct gccgcgcccg cgccgcgtcg
     1621 ccgcccggcg cgacccatat gttggggttg cggtcggtct gcacggagac catcgcgctg
     1681 ccgtccgccg tcaggctcac gtccacgtag gagttcaggt cgttggtcac gcggcggact
     1741 tcgcccgagg gtacaggagc ccccaaatct gctgcgggct cagctcctgc tccgcggcgc
     1801 tcagcacgag cccgccgtcg ggcagccacg ccatcgcgtt tatgttgaac cagcgctcgt
     1861 cggtcaggcg cgtctcggcg ccggtcgcga cgtcgaagga ggtgacgccc atgttggggt
     1921 tccccacctc gtagttgctc gtcgaggcga agacgcacgc gatcttatcg ccgtcgggcg
     1981 accatgcggg cagcaccagc ggcgagccgg gcttgccgcg cgcgagcgtg cgctcctcgc
     2041 ccccgccctc ggcgggcgcg acgacgagag aggtgccggt catcacttgc ccgcgtatga
     2101 aggtcatctg tttgccgtcg cgcgagaagc tgacggggct gctcaactcg tccaatatct
     2161 ttttcgtcgc gccgccgagc acgggcacgc ggaagaggga gggggcctgc tgtacgccgt
     2221 cgcggacgga cgcgaaatag acgtgcgagc tgtcgggcga gaaggtgacg ccgaagtaga
     2281 agacgccggg cgagggctcc actatccgct ggctgttgct ggcggccgcg acctgcctga
     2341 cccatacgct ggccgagccg ttctcattaa tgacgtaagc gaggtactgg ccgtcgggcg
     2401 agacggcggc cgtcaccacc gtgccggcga cgggcagccg cgttatcttc atcgtctgga
     2461 agccggcctg acgccgcggc tcgacgtggc cgggcagcac gaacctgtag atgaggaagg
     2521 tcagcccgcc cgccgccaga agcacggcga gcgcgatgag cacggccgcg cgcacgggcc
     2581 gccccgcgcc c
//
LOCUS       DASPKR010000385         4475 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_571570, whole genome shotgun sequence.
ACCESSION   DASPKR010000385 DASPKR010000000
VERSION     DASPKR010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4475)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4475
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_571570"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..459)
                     /locus_tag="VD968_10455"
     CDS             complement(<1..459)
                     /locus_tag="VD968_10455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14850.1"
                     /translation="MSHTRRLSFLLASLALALLFGAREARACSCGPTPTVLEAFEAAD
                     HVVVTRAVSVEKSEKAAPEGRIGDREHYVDGVKSTTMRVERVYKGGLKAGEELVFAQG
                     GGADCIWTFSERLVGQQFLFYLSSPEQGSKIWYGFGCGRSQVLDYAADDLL"
     gene            complement(491..2443)
                     /gene="thiC"
                     /locus_tag="VD968_10460"
     CDS             complement(491..2443)
                     /gene="thiC"
                     /locus_tag="VD968_10460"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: protein motif:HMM:NF006763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HYE14851.1"
                     /translation="MANVNGDGARREGEGQFPGSRRIYVDGGAAGVRVPFREVSLQPT
                     RMPGGRVEENEPVRVYDTSGPWGDPEASHDVRDGLPALRRDWILARGDVEEYEGREVT
                     PRDDGYLTTGAAEFARNKDRGRLEAFPGLRRAPLRARAGACVTQMHYARRGIVTPEME
                     FVALRENMGRERALHAMREHAREDRSSLLHQHRGESFGASIPEFVTPEFVRSEVARGR
                     AIIPANVNHPESEPMIIGRNFLVKINANIGNSAVASSIEEEVEKMRWATRWGADTVMD
                     LSTGKNIHTTREWILRNSPVPVGTVPIYQALEKVGGKAEELTWEVFRDTLVEQAEQGV
                     DYFTIHAGVRLPYIPLTARRTTGIVSRGGSIMAKWCLAHHEESFLYTRFSEICEVMRA
                     YDVSFSLGDGLRPGSIADANDEAQFAELETLGELTRIAWEMDCQVMIEGPGHVPMHLV
                     RENVERQLEVCGEAPFYTLGPLVTDVAPGYDHITSAVGAAMIGWFGTAMLCYVTPKEH
                     LGLPNRQDVKDGVIAYRLAAHAADLAKGHPGAQLRDNALSKARFEFRWEDQFNLSLDP
                     EVAREYHDETLPQEGAKLAHFCSMCGPHFCSMKITQDVRDYAREKGMDEHSALAAGMR
                     DKAAEFVSSGAEIYQGDLPGGARRDH"
     regulatory      complement(2535..2660)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2788..3153
                     /locus_tag="VD968_10465"
     CDS             2788..3153
                     /locus_tag="VD968_10465"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HYE14852.1"
                     /translation="MALTDKYATLIQLAGQLGINLDQREEGGVLHLKGTVPSDAHRER
                     LFEEYGRLDPGMGSGDLKLDIEVKADQETYTVQKGDTLSAVGQRHGVAWRDIFEANRD
                     QLDDPDKIRPGQQLRMPRK"
     gene            complement(3239..4237)
                     /gene="moaA"
                     /locus_tag="VD968_10470"
     CDS             complement(3239..4237)
                     /gene="moaA"
                     /locus_tag="VD968_10470"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR02666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HYE14853.1"
                     /translation="MTTGVLKDSYGRAIRDLRVSVTDRCNFRCFYCLPHGEPPAAPKE
                     EMLTYEEIETAVSVFASLGVEKVRLTGGEPMLRRDIETLVAKLSRVRGVRDLALTTNA
                     FNLAERAAGLKAAGLDRVTVSLDSLNAEAFRRMTGVDTLGRVLEGIRAAQRVGLTPVK
                     VNAVIVRGHNEGEVADMAAFAREHAVTMRFIEYMPLDSGHGWSREMVVSGAEIRERVN
                     ERFLLVARRGERGSDTATRYRFADGAPGEIGIIAPVTEPFCGACSRVRLTADGQIRTC
                     LFSKVEHSLRDVLRGGAAREEIADYIRSVVNQKEPRHYINETFFEQPARTMSLIGG"
BASE COUNT          720 a         1501 c         1491 g          763 t
ORIGIN      
        1 gagcaggtcg tccgccgcgt aatctaatac ttgcgacctc ccgcagccga agccgtacca
       61 gattttactg ccctgctcgg gcgaagagag gtagaagagg aactgctggc cgaccaagcg
      121 ctcgctgaaa gtccatatgc agtcggcgcc gccgccctgc gcgaagacca gctcttcgcc
      181 ggccttcagg ccgcctttat agacccgctc gacgcgcatc gtggttgact taacgccgtc
      241 cacgtaatgc tctcggtcgc cgatgcggcc ctcgggggcc gccttctcgg atttctccac
      301 ggagacggcc ctcgtgacga cgacatggtc tgcggcctcg aaggcttcga gcacggtcgg
      361 cgtcgggcca cacgagcacg cgcgtgcctc gcgcgccccg aaaagaagcg cgagcgccag
      421 agacgccagc agaaacgaga gccggcgtgt gtgggacata tagacctccg acccttcgcc
      481 cggcgcgccc tcagtggtcg cgccgggcgc ctccgggcag gtcgccctgg taaatctcgg
      541 cgccggagga gacgaactcg gcggccttgt cgcgcatgcc ggcggcgagc gccgagtgct
      601 cgtccatgcc cttctcgcgc gcgtagtcgc gcacgtcctg cgttatcttc atcgagcaga
      661 agtgcggccc gcacatcgag cagaagtgcg cgagctttgc gccctcctgc gggagcgtct
      721 cgtcgtggta ctcgcgcgcc acctccgggt cgagcgagag gttgaactga tcctcccagc
      781 ggaactcgaa gcgcgccttc gacaaggcgt tgtctcggag ctgcgcgccg gggtggcctt
      841 ttgcgaggtc ggccgcgtgc gcggccaggc ggtaggcgat gaccccgtct ttgacgtcct
      901 gacggttcgg caggccgagg tgctctttag gcgtgacgta gcagagcatg gcggtgccga
      961 accagcctat catcgccgcg cctacggccg aggtgatgtg gtcgtagccg ggcgcaacgt
     1021 ccgtgaccag cggcccgagc gtgtagaagg gggcctcgcc gcacacttcg agctggcgct
     1081 cgacgttctc gcgcactaag tgcataggca cgtggcccgg cccctctatc atcacctgac
     1141 agtccatctc ccatgcgatg cgcgtaagct cgcccagggt ttccagctcg gcgaactgcg
     1201 cctcgtcgtt ggcgtcggcg atggagccgg gccgcaggcc gtcgcccagg gagaacgaca
     1261 cgtcgtaggc gcgcatgacc tcgcagattt cgctgaagcg cgtgtagagg aagctctcct
     1321 cgtggtgggc gaggcaccac ttcgccatga tggagccgcc gcgcgagact atccccgtcg
     1381 tgcgcctggc ggtcaggggt atgtagggca ggcgcacgcc cgcgtggatg gtgaagtagt
     1441 caacgccctg ctcggcctgc tcgacgaggg tgtcgcggaa gacctcccac gtcaactcct
     1501 cggccttacc cccaactttt tcgagcgcct ggtatatggg gacggtgccg acggggacgg
     1561 gcgagtttcg cagaatccac tcgcgcgtgg tgtgtatgtt cttgcccgtg gacaagtcca
     1621 tgacggtgtc cgcgccccag cgcgtggccc agcgcatctt ctccacctcc tcctcgatgg
     1681 aggaggcgac ggccgagttg cctatgttgg cgtttatctt caccaggaag ttgcgcccga
     1741 ttatcatcgg ctccgactcg gggtggttga cgttagcggg gatgatggcg cggccgcgcg
     1801 ccacctcact gcggacgaac tcgggcgtga cgaactccgg tatggaagcc ccgaagcttt
     1861 cgccgcggtg ctggtggagg agggagcttc ggtcttcgcg cgcgtgctcg cgcatggcgt
     1921 gaagcgctct ttctctcccc atgttctcgc gcagcgcgac gaactccatc tcgggcgtta
     1981 ctatgccgcg acgggcgtag tgcatctgcg tcacgcacgc cccggcgcgc gctcgcaggg
     2041 gggctcggcg cagcccagga aaggcttcga ggcggccgcg gtctttgttg cgcgcgaact
     2101 cggccgcgcc cgtcgtcagg tagccgtcgt cgcgcggcgt cacctcgcgc ccctcgtact
     2161 cctccacgtc gccgcgcgcg agaatccagt cgcgcctgag cgccggcagc ccgtcccgca
     2221 cgtcgtgcga agcctcgggg tcgccccacg gcccggaggt gtcatagacg cggacgggct
     2281 cgttctcctc gacgcgcccg ccgggcatgc gcgtcggctg caagctcacc tcgcggaagg
     2341 ggacgcgcac gccggccgcg ccgccatcca cgtaaattct ccgcgagccg gggaactgcc
     2401 cttcgccctc acgcctcgcg ccgtcgccgt taacgttagc cataagttct gcctctcatc
     2461 ctcgcgcgcc cggcaggccc tcgcgccgcg cgcaaaaggc gaaaagccgc aaccgtgcct
     2521 aaagggacgt ttgcggcctc tacaccttgc ctcccttcgg cggtactaac cgcatcaggt
     2581 tcaaagggtc tcaccccgcg ggtgactctc agccgcccgg ccgacgaaaa acggcgtgcg
     2641 cggctccccc gttaagtttg ggaaggagtt taaccgcgag ccgcgcgatt gacaaatata
     2701 tgaccggtag cggacattcc cgttaacgac tttgactaca aaccccgcgg acgttcttga
     2761 gcctaccgtt agacggagga gggccttatg gcactgactg acaagtacgc tacgctcata
     2821 caactggccg gccagctcgg catcaacctg gatcagcggg aggagggcgg agtcctccac
     2881 ctgaagggga ctgtgccgag cgacgcgcac agggagaggc tgttcgagga gtacggccgg
     2941 ctcgaccccg gcatgggctc gggcgacctc aaactcgaca tcgaggtgaa ggccgaccag
     3001 gagacctaca ccgtgcagaa gggcgacacg ctgagcgcgg taggccagcg gcacggcgtc
     3061 gcctggcgcg acatattcga ggcaaaccgc gaccagctcg acgaccccga caaaatccgg
     3121 cccggccagc aactgcgcat gccgcgcaag tagccgaggc ccacgcacga agggcggccc
     3181 gcgcggaagc actttaacgg tgtgcttccg cgcgggccgg tatttttcaa gttcgtgctt
     3241 agccgccgat gaggctcatg gtgcgggcgg gctgctcgaa gaaggtctcg ttgatgtagt
     3301 ggcgcggctc cttctggttg acgaccgagc gtatgtagtc ggcgatctct tcgcgggcgg
     3361 ccccgccgcg cagcacgtcg cgcagcgagt gctctacctt cgagaagagg catgtgcgta
     3421 tctggccgtc ggccgtgagg cgcacgcgcg agcatgcgcc gcagaagggc tctgtgacgg
     3481 gcgcgatgat gcctatctcg ccgggcgcgc cgtcggcgaa gcggtagcgc gtggcagtgt
     3541 cggagccgcg ctcgccgcgg cgcgcgacga gcagaaacct ctcgttcacg cgctcgcgaa
     3601 tctccgcgcc ggagaccacc atctcacgcg accagccgtg gcccgagtcc agcggcatgt
     3661 actcgatgaa gcgcatcgtg accgcgtgct cgcgcgcgaa ggcggccatg tcggcgacct
     3721 ccccttcgtt gtggccgcgg acgatgacgg cgttgacctt gacgggcgtg aggcccaccc
     3781 tctgcgcggc ccttatgcct tcgagcacgc gcccgagcgt gtcaaccccg gtcatgcggc
     3841 ggaaggcttc cgcgttcagg ctgtcgaggc taaccgtcac gcggtcgagc cccgcggcct
     3901 tcaggccggc ggcgcgctcg gcgaggttga aggcgttggt tgtgagggcg aggtcgcgca
     3961 cgcctcggac gcgcgagagc ttcgcgacga gcgtctctat gtcgcgcctg agcatcggct
     4021 cgccgcccgt caatcgcacc ttctcaacgc cgagcgaggc gaagaccgag acggccgtct
     4081 cgatctcctc gtaggtgagc atctcctctt tgggggcggc cggcggctcg ccgtgcggca
     4141 ggcagtagaa gcagcggaag ttacacctgt ccgtcacaga cacccgaagg tctcttatcg
     4201 cccgcccgta agaatctttg agcacgcccg tcgtcatcag cgaataacgt ttgatagggg
     4261 ctcccgccgc cgttcagaat actgccgcga atcaatcata cgacgttcgg gcgcggcttc
     4321 aaaaccgggc gggccgggcg cggctcagtc gtccgcgccg ttctccgcga gcgcgcgtgc
     4381 gtttcgctgg agccccgaga gcttggcgcg cttgacgggg ctgcggcgga agcgctcgac
     4441 gtaagactcg tgcgtgagtt cggcgatctc ttcga
//
LOCUS       DASPKR010000386         7064 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_53922, whole genome shotgun sequence.
ACCESSION   DASPKR010000386 DASPKR010000000
VERSION     DASPKR010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7064)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7064
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53922"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1060)
                     /locus_tag="VD968_10475"
     CDS             complement(<1..1060)
                     /locus_tag="VD968_10475"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HYE14854.1"
                     /translation="MTKVLAAVIPSPRAPVELREFPEPDLEPDSALLRVELSEVCGTD
                     VHLQQGRLAGVPYPLIPGHVSVGRLEKIRGSVLDVHGRPFAEGDRVTFLDVHRTCNAC
                     WQCLVARSTTRCPARKVYGITYGAADGLSGGWAEKIYLKPGTRCIRLDAADAETFMAG
                     GCSLPTALHAVERAEVKLGDTVLVLGSGPVGLSSVILSHMSGALRVLCVGAPARRLEA
                     ARAVGAEATLDIETHDEPSRLAWVLEQTEGRGADVTIEAAGSPVAVKQAMRYTRDAGR
                     VVIVGQYTDHGETSFNPHLDLNRKHLDLRACWGSDFSHFYRAAQLISHPERSRPWASL
                     KLQRFALDEADGALAAVSS"
     gene            1069..1974
                     /locus_tag="VD968_10480"
     CDS             1069..1974
                     /locus_tag="VD968_10480"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HYE14855.1"
                     /translation="MIQSPGVADEAESARQEGAAVEVDAGRRGVLKGLLAAGLLGVSS
                     VAAYASLFEPFDYELTETVVPVRGLPAAFENFRVAHVTDVHHSRMVPLEEVRRVVRLA
                     NSARADLVVLTGDYTTSRRNYIEPCAEALGELRAPEGVWAVLGNHDHYNDAELTTRAL
                     KRRGVEVLSNASTVLRRGGESLRLAGVDDWGWGKADFSRALRGVDLARPSILLSHEPA
                     VLDMPETRGVSLVISGHTHGGQIRLPLVGAPARFIEEFRYLSGLFEREGTRLYVSRGT
                     GMIGLPVRIGARPEVAVLRLRRAEN"
     gene            complement(2067..3053)
                     /locus_tag="VD968_10485"
     CDS             complement(2067..3053)
                     /locus_tag="VD968_10485"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HYE14856.1"
                     /translation="MATVIDAAMREQLVERRHRLETAIVEADDAVALRRLLEEVDAAL
                     GRMDEGDYGLCEVCHDPVEPERLMADPLVCVCLGCLSPAQRRALEEDLELAAQIQAGL
                     LPCREFSHDGWQVSFHYEAAAVVSGDYCDVVTAEDGSVYFMLGDVAGKGVAASLLMSQ
                     LHATFRTLVPLGLPLEKIVERASRLFCESTLPTHYATLVCGRAGRSGEVEICNAGHLP
                     PLLIHNGDARLIEATGLPVGIFCNEEFTSERFTMSEGGTLFLFTDGLSEARSPDGAEY
                     STERLLRLLCRRHDLPPGALIQAALRDLSDFCAGAPRCDDLTVMAVRRAESK"
     gene            complement(3072..3470)
                     /locus_tag="VD968_10490"
     CDS             complement(3072..3470)
                     /locus_tag="VD968_10490"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYE14857.1"
                     /translation="MASKGAKAQVELLFKALADRTRLRLLNLMGDGEVCVCYFVEVLG
                     ASQPKISRHLAYLRRAGVVAARREGKWIHYRVVAPEDPHAARVFEEVMRWLREEREMQ
                     KDRARLEGICCAPQLPVKLQGAPRPANLPA"
     gene            complement(3476..3973)
                     /locus_tag="VD968_10495"
     CDS             complement(3476..3973)
                     /locus_tag="VD968_10495"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE14858.1"
                     /translation="MTFMLEKMLPEDWPQVRAVYLEGLATGDATFETEAPVWEQWDAS
                     HIRACRLVALGEGRRVAGWAALAPVSRRPAYAGVAEVSVYVGEGFRGRGAGRALLDAL
                     VRESEQEGVWTLQASVIAENEVSLALHRSCGFRVVGRRERIGRLAGRWRDTILLERRS
                     KIVGA"
     gene            4172..5101
                     /gene="arsM"
                     /locus_tag="VD968_10500"
     CDS             4172..5101
                     /gene="arsM"
                     /locus_tag="VD968_10500"
                     /inference="COORDINATES: protein motif:HMM:NF008823.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite methyltransferase"
                     /protein_id="HYE14859.1"
                     /translation="MSTNIEELVQGRYGSVARSGLSSEQAGVRAVAEAFGYTPEELAS
                     IPAEANMGLSCGNPTAYAHLRPGETVVDLGCGGGLDVFLAAEKVGPEGRAVGIDMTPD
                     MIELARRNAAKRAEGGAPANVEFHLAKIDALPLADASVDCVISNCVINLAPDKRAVFR
                     EAARVLKPGGRLAVSDIALKKPLPEEIERNLLAYVGCVAGAIPVEEYRRGLLEAGFEH
                     VEIIDSGADLNAYTKIGEQSGCCSPAPTEAAAASASACCAPAGAEASQPAAILSCCTG
                     AAEGAGDGEFAGLLRRYDVNEYAASVRVYAVKK"
     gene            complement(5178..5723)
                     /locus_tag="VD968_10505"
     CDS             complement(5178..5723)
                     /locus_tag="VD968_10505"
                     /inference="COORDINATES: protein motif:HMM:NF019430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HYE14860.1"
                     /translation="MRKFITAAALALVAAAPAAAFAWQAQEQTPAPPQGGQAVGGREG
                     FRRRALMGMHRRMRARRALAGLRALDLTDAQKQKLRALREAARERTKGQREELRQLLR
                     ARVEGGQLTTEQQARARELREQLRETRRRSREEALGLLTAEQRARLEQLRQEHKERRG
                     QMRQRREEFRQRRTREREGRQ"
     gene            5855..>7064
                     /gene="dxs"
                     /locus_tag="VD968_10510"
     CDS             5855..>7064
                     /gene="dxs"
                     /locus_tag="VD968_10510"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF003933.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HYE14861.1"
                     /translation="MSLLQSINSPEDLRRLRPEQLQGVADEIRQYILETMSRVGGHTG
                     ASLGAVELAVALHYAFDTPRDRLVWDVGHQAYAHKVLTGRRELLPTVKQYGGLSGFLR
                     RDESEYDTFGAGHASTSLSAALGMAIARDKRGEDHHVVAVIGDSSLAGGMAMEAVNQA
                     GHLKTRLIVLLNDNEMSIAPAVGALTGYLNRIRGAQGYHRFKDEVGDLLHDAPLFGER
                     LYQAAKTVKDAIAAAVLPGALVNELGFKYIGYVDGHNPRALVRALEEAKHIKDGPVVV
                     HALTQKGRGYPSREKNYYAWHATGPFDLKTGAPAKPSKPSHPSYTAVFGQTLCELMER
                     DERVVALTAAMPDGTGVDKVLEKFPERAFDVGIAEQHCVTFAAGMSTEGLKPVCAIYS
                     TFLQRAFDQIV"
BASE COUNT         1124 a         2390 c         2439 g         1111 t
ORIGIN      
        1 cggaggagac ggcggcgagg gctccgtcgg cttcgtcgag ggcgaagcgt tggagtttca
       61 gcgaagccca ggggcgggag cgctcggggt gggagattag ctgcgcggcg cggtagaagt
      121 gggagaaatc cgacccccag caggcgcgga ggtcgaggtg tttgcggttg aggtcgaggt
      181 ggggattgaa actcgtctcg ccgtggtcgg tgtactggcc gacgatgacg acgcggccgg
      241 cgtcgcgcgt gtagcgcatg gcctgcttga cggcgacggg cgagccagcg gcttcgatgg
      301 ttacgtcggc gccgcggccc tcggtctgtt cgagcaccca tgcgaggcgc gatggctcgt
      361 cgtgcgtctc gatgtcgagc gtggcttcgg cgccgacggc gcgcgcggct tcgaggcggc
      421 gcgccggggc gcctacgcag agcacgcgca gcgcgccgct catgtgtgag aggatgacgg
      481 acgagaggcc gacggggcca ctgccgagga cgagcaccgt gtcgccgagc ttgacttcgg
      541 cgcgctctac ggcgtgcagg gccgtgggga gcgagcagcc gccggccatg aaggtctcgg
      601 cgtctgccgc gtcgagccgt atgcagcgcg tgccgggctt gaggtaaatc ttctctgccc
      661 agccgcccga gaggccgtcc gccgccccgt aggttatgcc gtaaaccttc cgggcggggc
      721 agcgcgtcgt cgagcgcgcg acgagacatt gccagcaggc gttgcaggtt cggtgaacgt
      781 ctaggaaggt gacgcggtcg ccctctgcga aggggcggcc gtgcacgtcg agcacggagc
      841 cgcgaatctt ctctaagcgg ccgacggaga cgtggccggg gatgagcggg taggggacgc
      901 ccgcgagccg cccctgctgg aggtgaacgt ccgtgccgca gacttcgctc agctcgaccc
      961 ggagcagcgc ggagtcgggc tccaagtcgg gctcggggaa ctcgcgcagc tcgactggcg
     1021 cgcgcggcga ggggataacg gcggccagca ctttcgtcat caacgcggat gatacaatcc
     1081 cccggcgtgg cggacgaagc ggaaagcgcg cggcaggaag gcgcggctgt cgaggttgac
     1141 gcggggcggc ggggcgtctt gaaagggctg ctggccgcag gtctgctcgg cgtgtcgtca
     1201 gtcgcggcct acgcgagcct gttcgagccg ttcgactacg agctgacgga gactgtcgtc
     1261 cccgtgcgcg ggcttcccgc cgccttcgag aacttccgag tcgcgcatgt cacggacgtt
     1321 catcacagtc gcatggtgcc gctcgaagag gttcggcgcg tcgtgcgcct cgcgaactcg
     1381 gcgcgcgcgg acttggtcgt gctcacgggc gactacacga cttcgcggcg caactacata
     1441 gagccgtgcg ccgaggcgct cggcgagctg cgcgctcccg aaggcgtctg ggccgtgctc
     1501 ggcaaccacg accactacaa cgacgccgag ctgaccacgc gcgctctaaa gcggcgcggc
     1561 gtcgaggtgc tctcgaacgc gagcaccgtc ttgcggcgcg gcggcgagtc gcttcggctc
     1621 gcgggcgtgg acgactgggg ctggggcaag gccgacttct cacgcgccct ccgaggggtt
     1681 gacctcgcgc gcccgtcaat acttctctcc cacgagccgg cggtgctcga catgcccgag
     1741 acgcgcggcg tctcactcgt cataagcggc cacacgcacg gcgggcagat tcgcctgcct
     1801 ttagtcggcg cccctgcgcg cttcatcgaa gagttccgat acctgagcgg cctcttcgag
     1861 cgcgaaggca cgcgcctcta cgtctcgcgc gggacgggga tgatagggct gccagtccgc
     1921 ataggcgcgc gccccgaagt ggccgtgctg cgcctgcgaa gggcggaaaa ttagaagaag
     1981 gcagaaggca ataggcagcc gaggaaatct tcctggctgc ctactgcttt ctgccttctg
     2041 cgttacttcc cctcgcgcct ccgcggctac ttactctcgg cccttcggac ggccatgacg
     2101 gtgaggtcgt cgcagcgggg ggcgcctgcg cagaagtcgg agaggtctcg gagggcggcc
     2161 tgtatgagcg cgccgggcgg caaatcgtgg cgccggcaga gcagtcgcag cagccgctcc
     2221 gtgctgtact cagcgccgtc gggcgagcgc gcctccgaga ggccgtcggt gaagaggaag
     2281 agcgtgccgc cctcgctcat cgtgaaccgc tcggacgtga actcctcgtt gcagaagatg
     2341 ccgacgggca ggcccgtcgc ctcgatgagg cgggcgtcgc cgttgtgtat gagcagcggc
     2401 gggaggtggc cggcgttgca tatctcgacc tcgccggagc ggccggccct gccgcagacg
     2461 agcgtggcgt agtgcgtggg gagcgtgctc tcgcagaaga gccggctcgc gcgctcgact
     2521 atcttctcca gaggcaggcc gagcgggacg agcgtgcgga acgtggcgtg tagctgcgac
     2581 atcaggagcg aggcggcgac gcccttgccg gccacgtcgc cgagcatgaa atagacgctg
     2641 ccgtcctcgg ccgtcacgac gtcacagtag tcgccgctaa cgaccgccgc ggcctcgtag
     2701 tggaaagaga cctgccagcc gtcgtgcgag aactcgcggc agggcagaag gccggcctgt
     2761 atctgcgccg ccagctccaa gtcctcttcg agcgcgcgcc gctgcgcggg cgaaagacaa
     2821 ccgaggcaga cgcacaccag cgggtcggcc atcagccgct cgggctcgac cgggtcgtgg
     2881 cagacctcgc acagcccgta gtcgccttcg tccatcctcc cgagcgccgc gtccacctct
     2941 tcgagcaggc ggcgcagcgc caccgcgtcg tctgcctcga ctatcgcggt ctctagcctg
     3001 tgcctccgct cgactaactg ttcgcgcatc gcggcgtcta tcaccgtagc cattgaaagc
     3061 ctcctgaaaa tttacgcggg aaggttggca gggcgcggcg cgccctggag cttgaccggg
     3121 agctgcggcg cgcagcagat gccttccagt cgcgcgcggt ctttctgcat ctctcgctcc
     3181 tcgcggagcc aacgcataac ctcctcgaag acgcgcgcgg cgtgcgggtc ttcgggcgcg
     3241 acgacgcggt agtgtatcca cttgccctcg cggcgcgcgg cgacgactcc cgcgcgccgg
     3301 aggtacgcca gatgcctgga aatcttcggc tggctcgccc ccaagacttc gacgaagtag
     3361 cagacgcaga cctcgccgtc gcccataagg ttcaggagcc tgaggcgcgt tcgatccgcc
     3421 agcgccttga agagaagctc cacctgcgcc ttcgcgccct tcgaagccat ggtcatcacg
     3481 cccccacgat tttgctacgc cgttcgagaa gtattgtgtc gcgccagcgg cccgccagcc
     3541 ggccgatgcg ctcgcgcctg ccgaccacgc ggaacccgca cgagcggtga agggctaagc
     3601 tcacctcgtt ctccgcaatg acgctcgcct gcaaagtcca gacgccctcc tgctccgact
     3661 cgcgcacgag cgcatccaga agcgcgcggc ccgccccgcg cccgcggaac ccctcgccga
     3721 catagacgct cacctcggcc acgcccgcgt aggcgggcct gcgcgagacg ggcgcgagcg
     3781 cagcccagcc ggccaccctc cgcccttcgc ccaacgccac cagcctgcac gcccgtatgt
     3841 gcgaagcgtc ccactgctcc cacaccggcg cctccgtctc gaaggtcgcg tcgcccgttg
     3901 cgagcccttc cagatagacg gcgcgcacct gcggccagtc ctcggggagc atcttttcga
     3961 gcataaacgt catacgaatt ttgtcccgcc cgcggcacaa gttttttcgc ctgagacaac
     4021 gtccgagcgc ccgaaaaata ataacatatt tgccttgaca tatgtgtcgg cgcgggtgta
     4081 ttgtgccatc acattcgctt cggcgtatgt gaatcataag gccgggaggc ggccggtggc
     4141 aaggggtaat ttccgtctga ggagaagaat gatgagcaca aatattgagg agttggttca
     4201 gggcaggtac ggctcggtgg cgcgcagcgg cctttcgagc gagcaggcgg gcgtgcgcgc
     4261 cgtggccgag gcgttcggct acacgccgga ggagctggcc tccatcccgg ccgaggcgaa
     4321 catggggctc tcgtgcggga acccgacggc ctacgcgcac cttcgcccag gcgagactgt
     4381 cgttgacctg ggatgcggcg gcggcttgga tgtcttcttg gccgccgaga aggtaggccc
     4441 cgaaggccgt gccgtcggga ttgacatgac gccggacatg attgagctcg cgcgtcgcaa
     4501 cgcggcgaag agggccgaag ggggggcgcc cgcgaacgtc gagttccact tggcgaagat
     4561 agacgcgctg cctctcgcag acgcctccgt ggactgcgtc ataagcaact gcgtcatcaa
     4621 cctcgcgccg gacaagcgcg cggtctttcg cgaggcggcg cgcgtgctca agcccggcgg
     4681 gcggctggcc gtgagcgaca tcgcgctcaa gaaacctctg cccgaagaga tagagcgcaa
     4741 cctcctcgcc tacgtcggct gcgtggcggg cgcgataccc gtggaggagt accggcgcgg
     4801 gctcctcgaa gcgggcttcg agcacgtcga gatcattgac agcggcgcag acctgaacgc
     4861 ctacacgaag ataggcgagc agtccggctg ctgctcgccc gcgccgacgg aggcagccgc
     4921 ggcgtcggcg tctgcctgct gcgcgcccgc cggcgcagaa gcatcgcagc ccgctgcgat
     4981 actcagctgc tgcacgggcg ccgccgaggg agccggcgac ggagagttcg cgggactgct
     5041 gcgccgctac gacgtgaacg agtacgcggc cagcgtccgc gtctatgccg tgaagaagtg
     5101 aggaaatgaa tcgcccgccg tctcttagtc ataggtgact gggtgacggc gggcgacgcc
     5161 tgacgagtac ctttcatcta ctgccggcct tcgcgctcgc gcgtgcggcg ctggcggaac
     5221 tcttcgcggc gctggcgcat ctgcccgcgg cgctccttgt gctcctgcct gagctgttcg
     5281 aggcgggcgc gctgctccgc cgtcagaagg ccgagagcct cttcgcgcga gcgtcggcgc
     5341 gtctcccgga gctgttcccg cagctcgcgt gcgcgcgcct gctgctcggt ggtgagctgg
     5401 ccgccctcga ccctcgcgcg caggagctgg cgaagctctt cgcgctgccc cttcgtccgc
     5461 tcgcgggcgg cctcgcgcag cgcgcgtagc ttctgcttct gcgcgtcggt caaatccaaa
     5521 gcccgaagcc cggccagagc gcgacgggcg cgcatgcgcc tgtgcatccc catcaatgcg
     5581 cggcgcctga agccttcgcg gcccccgacg gcctgaccgc cctgcggcgg cgcgggcgtc
     5641 tgctcctgcg cctgccacgc gaacgccgcg gcgggcgcgg ccgctacgag agcgagcgcc
     5701 gcggcggtta tgaacttcct catctttaaa ctccttctga aaaaaatctg ccgtcagcgt
     5761 ctttgacgcg cgggggccgt gtttggacgg gaagaaagtt tcggccgcgg cgcgcctgcc
     5821 ggccggggcc tgctcatgct acaatccgcg cctgatgagt ctcctacaaa gcatcaactc
     5881 gccagaggat ttgcggcgcc tgcgccccga acagttgcag ggagtcgccg acgagattcg
     5941 ccagtacatt ctcgagacga tgtcgcgcgt gggcggccac acgggcgcga gcttaggcgc
     6001 cgtcgagctg gccgtcgcac tgcactacgc cttcgatacg ccgcgcgacc ggctcgtctg
     6061 ggacgtgggc caccaggctt acgcgcacaa ggttctgacg ggccgccgag agcttctgcc
     6121 gaccgtcaag cagtacggcg gcctctccgg cttcctgcgg cgcgacgagt cggagtacga
     6181 caccttcggc gccggccacg cttccacttc gctctcggcg gcgctcggca tggcgatagc
     6241 gcgcgacaag cgcggtgagg atcaccatgt cgtcgccgtc atcggcgact cgtctctggc
     6301 gggcgggatg gctatggagg ccgtcaacca ggcgggccac ttgaagacgc gcctcatcgt
     6361 cctcctcaac gacaacgaga tgtcaatcgc ccccgcggtc ggcgcgctga ccggctacct
     6421 caaccgcata cgcggggcgc aaggctacca ccgcttcaag gacgaggtcg gcgacctcct
     6481 gcacgacgcg ccgctcttcg gcgagcggct ctaccaggcc gccaagaccg tcaaggacgc
     6541 gatcgccgcc gccgttctgc cgggcgcgct cgtcaacgag ctgggcttca agtacatagg
     6601 ctacgttgac ggccacaacc cgcgcgcgct cgtgcgggcg ctcgaagagg cgaagcacat
     6661 caaggacggc cccgtcgtcg tccacgccct cacgcagaag gggcgcggct acccttcgag
     6721 ggagaagaac tactacgcct ggcacgccac cggccctttc gacctcaaga cgggcgcgcc
     6781 cgccaagccc tcgaagccct cgcacccgag ctacacggcg gtcttcggcc agacgttgtg
     6841 cgagctgatg gagagggacg agcgcgtcgt cgcgctcacc gccgcgatgc cggacgggac
     6901 gggcgtggac aaggtgctgg aaaaattccc ggagcgcgcc ttcgatgtcg gcatcgccga
     6961 gcagcactgc gtcacgttcg ccgccgggat gtcaaccgag ggcctgaagc ccgtctgcgc
     7021 catctactcg accttcctgc agcgggcgtt cgaccagata gtcc
//
LOCUS       DASPKR010000387         3431 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_572023, whole genome shotgun sequence.
ACCESSION   DASPKR010000387 DASPKR010000000
VERSION     DASPKR010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3431)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3431)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3431
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_572023"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..274
                     /locus_tag="VD968_10515"
     CDS             <1..274
                     /locus_tag="VD968_10515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14862.1"
                     /translation="STQQFTFEGREFTLGTFEDRRKNYFSMDVGAVVEFYHSRRFFSR
                     FDAGDTIIRYGERAQEIFLGPQANFFQVPAETKHNFQFTAGVGFRF"
     gene            complement(352..597)
                     /locus_tag="VD968_10520"
     CDS             complement(352..597)
                     /locus_tag="VD968_10520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14863.1"
                     /translation="MGPETKRRVLRAGGVAVARRLIKPVPVVGAALTVGLAGYEMKRK
                     GALRGAVDVGLDLLPVVGTAKAVLEIFTGDLIPDKKK"
     gene            complement(605..1090)
                     /locus_tag="VD968_10525"
     CDS             complement(605..1090)
                     /locus_tag="VD968_10525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYE14864.1"
                     /translation="MFQIKAAFSEQMEWRTSLERAREFLCDLRNVAELMPGVERITAE
                     AGGVARWLIRADVPVIGSIRQVFSVSQAVNDPTRVEWAPAEGERKNFMRYSLAFEAVG
                     AAATRIRIDHRVELRRQAARELHALAALAGESRLSAAMQKRVTEMMRTFLQRARARLE
                     R"
     gene            complement(1143..>3431)
                     /locus_tag="VD968_10530"
     CDS             complement(1143..>3431)
                     /locus_tag="VD968_10530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14865.1"
                     /translation="EHDEPWSVYGRVNRYRFDLNRDNVATSQVETRNLQRAYLEWNPQ
                     VAVDHHGQPSQFFFPPAALPVNPNLPPEQTARWLTTFGRANAAQFDQRNWDFYVRDIF
                     DLFYPGYWDSWPALNGATGMTYETDSGGTKGLAWRRDDETVVTMRSGIAKHFVASLTT
                     LATAAANREARVRDFYEFKRTAVEEGQRGRLRRFVLLPGRDPGRAAELVENLLRAGIE
                     VRQATAPFRSARAHDYSGKDSPAAARDFAAGAYVIDLAQPQGRLAKALLEVHTPLDQA
                     FEREQLARFARNERRGRSAAKEEYGFYDVTAWSLPLAFGVEAYWTEDAAPVEGSLLSM
                     PASPDRDSTGSVALTGRQGRVEGGRAQIAYVIPYESNGAASLIYRLLREGFKLAVATR
                     TLNAGGRDWPRGTVVARVSRNPESLHERVARLAAETGVTVMAVNTGFSESGDVGVGSE
                     TVVSLRRPKIIVAADEPVSVTGYGAMWWTFDRMGVDFTPMTIDAIRRARLDDYNVIIL
                     PDGSPGRYFSAFGKSGVEALRGWVERGGTLVLVKGAAVFGALKDVNLTSSRLVGSEDD
                     DQKSGSDGAAAAEQKPTPTPSPEGAQGQGGSRRQEQAAAQASAPPEQQEITGAQTEKM
                     EGAPPELPPIASPSARPGKVPEGVPGAIMRATVDRTTPLTYGYEEQTLPVLVDSAYFF
                     RPSKDGTNAVVFSSDSSRRLHVAGFIWPTTEQLLRGTAHVIDEPTGRGHVVLYAEDPN
                     FRAIWRSTTRLFFNSFLFQPIF"
BASE COUNT          519 a         1161 c         1190 g          561 t
ORIGIN      
        1 ctccacacag cagttcacct tcgagggccg cgagttcacg ctcgggacgt tcgaggacag
       61 gaggaagaac tacttctcga tggacgtggg cgccgtcgta gagttctacc actcgcgccg
      121 cttcttctcg cgcttcgacg cgggcgacac gataatccgt tacggcgagc gagcgcagga
      181 gatattcctc ggcccgcagg ccaacttctt ccaagtcccg gccgagacca agcacaactt
      241 ccagtttacc gccggcgtcg gcttccgttt ctaaagaata gaaggcggaa ggcagtaggc
      301 ggtcgagacc tgttagcgcg tcccgaccgc ctactgcctt ccgccttccg cctacttctt
      361 tttatccggt atcaggtcgc cggtgaaaat ctcgaggacg gccttggctg tgccgacaac
      421 gggcaggagg tctagcccca cgtccacggc gccgcgcagg gcgccctttc gcttcatctc
      481 gtagccggca agcccgacgg tgagcgccgc gccgacgacg gggacgggct ttatcagccg
      541 gcgcgccacg gccacgccgc ccgccctcaa gactctccgc ttagtctccg gccccataaa
      601 gggcttacct ctcgaggcgc gcgcgggcgc gctgaaggaa cgtgcgcatc atctccgtga
      661 cgcgcttctg catggcggcg ctcaggcggc tctcgccggc gagcgcggcg agcgcgtgca
      721 gctcgcgcgc ggcctgccgg cgaagctcta cgcgatggtc tatgcgtatg cgcgtggcgg
      781 cggcgcccac ggcctcgaag gcgagtgagt agcgcatgaa gttcttgcgc tcgccctcgg
      841 ccggcgccca ctcgacgcgc gtcgggtcgt tgacggcctg cgagacgctg aacacctgcc
      901 gtatggagcc gatgacggga acgtcggcgc gtatgagcca gcgggcgacg cccccggcct
      961 cggccgtgat gcgctcgacg cccggcataa gctccgccac gttgcgcagg tcgcacagga
     1021 attcccgcgc gcgctccagg ctagtccgcc actccatctg ctcgctgaat gccgccttga
     1081 tctggaacat aagtagtctg tcaaaaattt tagcccgccg ccctccgccc tgtcacccgc
     1141 cgctaaaaga tcggctggaa caggaacgag ttgaagaaga gtcgcgttgt cgagcgccag
     1201 atggcgcgga agttcgggtc ttcggcgtag agcacgacgt gaccgcgccc cgtcggctcg
     1261 tctatgacgt gagccgtgcc gcgcagcagt tgctcggtcg tcggccatat gaagcccgcg
     1321 acgtgcaggc ggcgcgacga gtccgaggag aagacgacgg cgttcgtgcc gtccttcgac
     1381 gggcggaaga agtaggccga gtcaaccagc acgggcaagg tctgctcctc gtagccgtac
     1441 gtgagcggcg tcgttcggtc aaccgtcgcg cgcatgattg cgccggggac gccctcgggg
     1501 actttaccgg gccgcgccga cggcgacgcg atgggcggaa gctcgggcgg cgcgccctcc
     1561 atcttctccg tctgcgcgcc tgttatctcc tgctgctcgg gcggggccga ggcttgcgcg
     1621 gccgcctgct cctgccgccg gctcccgccc tgcccctgcg cgccttcggg cgacggcgtg
     1681 ggcgtcggct tctgctccgc ggctgcggcg ccgtccgagc ccgacttctg gtcgtcgtcc
     1741 tcactcccga ccaggcgaga agaggtcagg ttcacgtcct tgagagcgcc gaagacggct
     1801 gcgcccttga cgagcacgag cgtgccgcca cgctcgaccc agccgcgcag ggcctcgacg
     1861 ccgctcttgc cgaaagccga gaagtagcgg ccgggcgagc cgtccggcag aattatcacg
     1921 ttgtagtcgt cgaggcgcgc gcgcctgatt gcgtcaatcg tcatgggcgt gaagtcaacg
     1981 cccatgcggt cgaacgtcca ccacatcgcg ccgtagcccg tgacgctgac gggctcgtcg
     2041 gccgcgacaa taatcttcgg ccgccgcaag gagacgaccg tctcggagcc cacgcccacg
     2101 tcgccggact cggagaagcc ggtgttgacc gccatcaccg tgacgcctgt ctccgccgcg
     2161 agccgcgcga cgcgctcgtg caggctttcc gggttgcgcg agacgcgcgc gaccacggtg
     2221 ccgcgcggcc agtcgcgccc gcctgcgttt aatgtgcgcg tcgcgacggc gagtttgaag
     2281 ccctcgcgga gtagccggta gatgagcgac gccgcgccgt tcgactcgta agggatgacg
     2341 taggctatct gcgcgcggcc gccctcgacg cggccctgcc ggcccgtgag cgcaaccgat
     2401 cccgtagagt ccctatcggg cgaggcgggc atggagagga gtgagccttc gacgggcgcc
     2461 gcgtcctccg tccagtaagc ctcgacgccg aatgcgagcg gcaaagacca ggcggtcacg
     2521 tcgtagaagc cgtactcctc tttggctgcg ctgcggccgc gccgctcgtt gcgggcgaag
     2581 cgcgcgagct gctcgcgctc gaaggcctgg tcgagcggcg tgtgaacttc gagcagcgct
     2641 ttggcgagcc gcccctgcgg ctgcgcgagg tctatgacgt aagcgcccgc ggcgaagtcg
     2701 cgggccgcgg cgggcgaatc cttccccgag tagtcgtgcg cgcgcgcgga gcggaagggc
     2761 gcggtcgcct gccggacttc gatgcccgcg cgcagcagat tctcgaccag ctcggcggcg
     2821 cggccggggt cgcgccccgg caggaggacg aagcggcgca ggcgcccgcg ctgcccttct
     2881 tcgacggccg tgcgcttgaa ctcgtagaag tcgcgcacgc gcgcctcgcg gttcgcggcg
     2941 gcggtggcga gtgtggtcaa agaagccacg aagtgcttgg caatccccga gcgcatcgtg
     3001 actaccgtct cgtcgtcgcg ccgccacgcg agccccttcg tgccgcccga gtcggtctcg
     3061 taggtcatcc ccgtcgcgcc gttcagggcg ggccaagagt cccagtagcc ggggtagaag
     3121 agatcgaaga tgtctcggac gtagaagtcc cagttgcgct ggtcgaactg cgcggcgttg
     3181 gcgcggccga aggtggtgag ccagcgcgcg gtctgctcgg gcgggaggtt cgggttgacg
     3241 gggagcgcgg ccggcgggaa gaagaactgg ctgggctggc cgtggtggtc aaccgcgacc
     3301 tgcgggttcc attcgaggta cgcgcgctgg aggttgcgcg tttcgacctg tgaggtggcg
     3361 acgttgtcgc ggttcaggtc gaagcggtag cggttcacgc gcccgtaaac cgaccagggc
     3421 tcgtcgtgct c
//
LOCUS       DASPKR010000388         2676 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_831158, whole genome shotgun sequence.
ACCESSION   DASPKR010000388 DASPKR010000000
VERSION     DASPKR010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2676)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_831158"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2109)
                     /locus_tag="VD968_10535"
     CDS             complement(<1..2109)
                     /locus_tag="VD968_10535"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE14866.1"
                     /translation="MLSKCDTRLRCLFLAVTLGLFPYAPVQARQQPRRPAPEKEDEVV
                     RITTELVQTDVAVFDKRGRFVDDLRPEQFELWVNGKKQAIAFFERVRAGSRVEEALLA
                     GASSRGPGAGKTAEPGRAATAAEPAGRLIFFFVDDLHLSAVSMGRARTALQRYVDTAL
                     SPNDQVAIVSASGQVGFLQQLTDNPAVLRAAIGRLGYKKAGEVYSGKTQISEFAASQV
                     LDSGNRELYAYLLESTKIEQQMGPGSRHGDHTLAASYSAAPHLRNRLRQVRAMGRMAT
                     AGTLDALRSLMLSAGGLPGRKLVFFLSDGFILNERSAGAAETLGGVAQAAAEAGAVVY
                     TMDLRQSLFGAGSGIDASTNDYIDLTARRIGVDLGEISATREPLQRLADETGGRAIFN
                     SGSIDEAVRQALDETADYYLLAWRPDSPELREARARLKVSVKGHPEWRVRLRAASFSV
                     PAAVKKEAGRAATPSAAREPRAGAIEGAGNPGEAGAAVDGEKAAKAKPNDAELLAALA
                     SLHPRRGLPIALSAGYLDTGDQGTVLNVSMQLARTAFAFDSAAGGERKALVDVAGAAI
                     DDRGLFGSFKQLLTVTPDAAGGDASQPVIWHRQLRLKPGLYQVRVALRDRATGRVGSA
                     MQWVEIPDLSKGDFALSSIFLGERNTQTADAGREASQPRSVAVDVDRRFARASVLRFQ
                     TYVYNSAPAGGAVGRDVQLQA"
     gene            2350..>2676
                     /locus_tag="VD968_10540"
     CDS             2350..>2676
                     /locus_tag="VD968_10540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14867.1"
                     /translation="MKSVDLDAAAEAAETRLAPARPAALIQAARARVSAGRRQSESVT
                     LACAVSLAVILGVACGMWITSLASAASVSRARPIQPPPTIQEEARHASAPPGATEPRP
                     GDSADAT"
BASE COUNT          385 a          934 c          926 g          431 t
ORIGIN      
        1 cgcctgaagc tgcacgtcgc ggcctacagc gccgcccgcg ggcgcggagt tgtaaacgta
       61 cgtctggaag cgcaggacgc tggcgcgcgc gaagcggcgg tcaacgtcaa ccgcgaccga
      121 gcgcggctgg ctcgcctcgc gtccggcgtc ggccgtctgc gtgttgcgtt cgccgaggaa
      181 gatgctgctc agggcgaagt cgcctttcga gaggtccggg atttcgaccc actgcatggc
      241 gctcccgacg cgacccgtgg cgcggtcgcg cagggcgacg cgcacctgat acagccccgg
      301 cttgaggcgc aactgccgat gccagatgac gggttgcgag gcgtcgccgc cggccgcgtc
      361 gggggtgacg gtcagcaact gcttgaaact cccgaacagc ccccggtcgt ctatggccgc
      421 gcccgcaacg tcaacgaggg ctttgcgctc gccccccgcc gcggaatcaa aggcgaaggc
      481 cgtccgcgcc aactgcatcg agacgtttaa gaccgtacct tggtctccgg tgtcgaggta
      541 gcccgccgag agcgcgatgg gcaggccccg ccgcgggtgg agggacgcga gcgcggccag
      601 cagctcggcg tcgttcggct tagctttggc ggccttctcg ccgtccaccg cggcgcccgc
      661 ctctccggga ttgccggcgc cctctatcgc cccggctcgc ggctctcgcg ccgcggacgg
      721 ggtcgccgcc cgcccggctt cttttttgac cgcggcaggg acgctaaacg aagcggccct
      781 cagtcgcacg cgccattcgg gatgcccctt gacgctgact ttcagccgcg ccctggcctc
      841 gcgcagctcc ggcgagtcgg ggcgccaggc gagcaggtaa tagtcggcgg tctcgtcgag
      901 ggcttgccgc accgcttcgt ctatggagcc cgagttgaag atggcgcgcc cgcccgtctc
      961 gtccgctagg cgctggagcg gctccctcgt ggccgaaatc tccccgaggt caactccgat
     1021 gcggcgcgcg gtgaggtcta tgtaatcgtt cgtgctggcg tcaatgccag agccagcccc
     1081 gaagaggctc tgccgcagat ccatcgtata gaccacggcg ccggcctcgg cggccgcctg
     1141 cgcgacgccg cccagcgtct cggcagcgcc cgcgctgcgc tcgttgagga tgaagccgtc
     1201 agagaggaag aagacgagct tacggccggg aagcccgccg gccgaaagca tcagggaacg
     1261 gagcgcgtcg agggtgccgg cggtcgccat ccggcccatc gcgcgcacct gccgcagccg
     1321 gttgcggagg tgaggcgcgg ccgagtagga ggccgcgagg gtgtggtcgc cgtggcggct
     1381 gcccggcccc atctgctgct cgatcttggt agattcgagg aggtacgcgt acaactcacg
     1441 gttgcccgag tcgagcactt ggctcgccgc gaactcgctg atctgcgtct tgccgctata
     1501 gacctccccg gccttcttgt agccgaggcg gcctatggcc gcgcgcagca ccgccgggtt
     1561 gtccgtcagt tgctgcaaga accccacctg cccgctcgcg cttacgatcg ccacctggtc
     1621 gttcgggctc agggcggtgt caacgtagcg ctgcaaggcg gtgcgcgcgc ggcccatgct
     1681 cacggcgctc aggtgcaggt cgtcaacgaa gaagaagatg agccgcccgg cgggctcggc
     1741 ggcggtagcg gcccggccgg gctcggccgt cttgccggcg ccggggccgc gcgacgaggc
     1801 gcccgccaac agcgcctctt cgacgcggct gcccgccctg acgcgctcga agaaggcgat
     1861 ggcctgcttc ttcccgttca cccacaactc gaactgttcg ggccggaggt cgtcaacgaa
     1921 gcgcccgcgc ttatcgaaga ccgctacgtc cgtctgcacc agctccgtcg tgatgcggac
     1981 gacctcgtcc tccttctccg gcgcgggccg tcgcggctgc tgccgcgctt gaactggagc
     2041 ataggggaag aggccgagtg tgacggccaa gaacaggcag cgtagtctgg tgtcgcactt
     2101 cgagagcatt cgggcgagcc tccaatctta ccttcgggtc gtcaccttaa catacgtgct
     2161 ccgccgccat aaagatgttg ccgtcgccct gcgcccgtct ggtgtcactc agggcggggc
     2221 ttgacgagca gcgttgctgc ggtctggctc atgctattag tcttgcaggg ggattgtgcg
     2281 cctcgccgtc ccgtgatata agccgcgcgg acgctcgggc gttacgatga aagctaccgc
     2341 tcaccgttta tgaaatctgt tgacctagat gcggcggcgg aggccgccga gacgcgcctc
     2401 gcgcccgcgc ggcccgcggc tctaatacag gcggcgcgcg ccagagtgag cgccgggagg
     2461 cgccagtcgg agtcagtcac gctggcctgc gccgtctctc tggccgtcat cctcggcgtc
     2521 gcctgcggga tgtggattac cagcctcgcg tcggccgcct ccgtgtcgcg cgcaaggccg
     2581 atccagccgc cgcccacgat tcaggaggag gcgaggcacg cttcggcgcc gccgggcgcg
     2641 acggagcccc gaccgggcga ttccgccgac gccacg
//
LOCUS       DASPKR010000389         3920 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_184798, whole genome shotgun sequence.
ACCESSION   DASPKR010000389 DASPKR010000000
VERSION     DASPKR010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3920)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3920
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184798"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1015
                     /locus_tag="VD968_10545"
     CDS             <1..1015
                     /locus_tag="VD968_10545"
                     /inference="COORDINATES: protein motif:HMM:NF025877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Wzt carbohydrate-binding domain-containing
                     protein"
                     /protein_id="HYE14868.1"
                     /translation="GAGFDPEFTGVENVFMNAALMGLSRRETERLLPEIERFAEIGPF
                     LQQPIKTYSSGMFVRLAFAVAACVEPDVLVIDEALAVGDAVFQHRCLRRIKEIQERGA
                     TVLFVSHDAAAVRALCSRAILLSAGRVVADGRPPEVLNRYQKIIMERERDFEEREAAA
                     HAGGGAPGDEDEGGAPLKCAYRHGDGSAEVVSAALLDASRREVEVVETGEPLTLRVRA
                     RFRADVPDAVVGFLVRDRHGIHIYGTNTKEQQIDLGALRRGEAVEVSFAFDCWLGLGQ
                     FSVSLAVHSGDGRAYDWLDGALFFRVTSPRLIEGVANLNATAAVRRLSPRRAEEPSRP
                     MNV"
     gene            1027..1887
                     /locus_tag="VD968_10550"
     CDS             1027..1887
                     /locus_tag="VD968_10550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14869.1"
                     /translation="MVDQEVEATLREIRERVRAEAASRAPAQTAPATIEPGAAPAAAA
                     RGTAADAIARMHANAATTERAWSRLPPLMSYRSGAAARFELWLKRLVKRAAHWFTWEQ
                     VNFNSAVHHSLADAREALAAHEQVIERLRAEVASLRQSLERQMRAELEAERAKSEARH
                     AESEARHAELGARMARAESRAESELARLGGLIADTAAQLRSEQAASAESLSAGQREIL
                     EALRGELESYAAALRREAREQVSDVLEEQRVCFRQLSLESTEAAVAQDRARRLTESRL
                     EALEAKISGG"
     gene            1931..3253
                     /locus_tag="VD968_10555"
     CDS             1931..3253
                     /locus_tag="VD968_10555"
                     /inference="COORDINATES: protein motif:HMM:NF014414.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYE14870.1"
                     /translation="MDDLYRRAGIEDLAEFYRTKFTSDEVLDARYFRALDRFDMRFAR
                     TMWVYDNVRAGSTVLDLGCGAGMLALLKRKGVTLVGVDISEECALASRRNGYDATFSA
                     ALTRLPFPDVAFDYVASLDVLGHVAFEEKDAVLGEIRRVLRPGGVTLHGIECTDRRAQ
                     KSYEEMTEEELRRFVEVDGHVGLEEEQEHAARFRRFFEHVAWEPRYALCLSSEEFVKQ
                     AEKYGLPFESDFVEYLRGQTFAERRAFDMAMGYVFSKISDLHVKLPKAGLYVLVKASD
                     APLGPFYNEHRDRSALFNTTPLAGAPAGRVVCLDRDPRAAFDDGWYEPNLLPPVARWM
                     RGRAAVRFRAPSLSAVRLDLTSHIPDLGERPLGLEVALNGETLSALSLFRQGWLSLRL
                     DVPPALSAAQDYALEIRADRTWRPRPDDPSNTDDRELSIAVCNIEIEP"
     gene            3250..>3920
                     /locus_tag="VD968_10560"
     CDS             3250..>3920
                     /locus_tag="VD968_10560"
                     /inference="COORDINATES: protein motif:HMM:NF042870.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IIL restriction-modification enzyme MmeI"
                     /protein_id="HYE14871.1"
                     /translation="MNVQEFIAKWRKVELTERSASQQHFLDLCELLEHPKPAAVDAAG
                     EWFTFERGAAKRGGGRGWADVWKKDFFGWEYKGKHKSLAAAYEQLQLYREALENPPLL
                     VVCDMERVVVHTNFTATVNRAYEIPLEGMAEPENLEILRSVFHAPERLRPQATVAGVT
                     TEVAERLAAVARAMRDRGLEPHAVARFLDRIVFCLFAEDVGLLPRGLFTQIAERSRTP
                     ESFAR"
BASE COUNT          590 a         1402 c         1356 g          572 t
ORIGIN      
        1 gggcgcgggc ttcgacccgg agttcacggg cgtcgagaac gtgtttatga acgcggcgct
       61 gatgggcctc tcgcgccgcg agacggagcg gctgctgccc gagatagagc gcttcgcaga
      121 gataggcccg ttcctccaac aaccgatcaa gacatactct tcggggatgt tcgtgcggct
      181 cgccttcgcc gtcgcggcct gcgtcgagcc ggacgtgctc gtcatagacg aggcgctggc
      241 cgtcggcgac gccgtcttcc aacaccgctg cctccggcgc ataaaggaga ttcaggagcg
      301 cggcgcgaca gtgctcttcg tctcgcacga cgcggcggcc gtgcgcgccc tctgctcgcg
      361 cgcgattctc ctgagcgcgg ggcgcgtagt cgccgacggg cgcccgcccg aggtgcttaa
      421 ccgctaccag aagatcatca tggagcgcga gcgcgacttc gaggagcgcg aggcggcggc
      481 gcacgcgggc ggcggcgcgc cgggcgatga agacgaaggc ggcgcccccc tcaagtgcgc
      541 ctaccgccac ggcgacggga gcgccgaggt cgtctcggcc gcgctgctcg acgcctcgcg
      601 gcgggaggtc gaggtggtcg agacgggcga gccgctcacg ctgcgcgtgc gggcgcgctt
      661 ccgcgcggac gtgccggacg ccgtcgtggg cttcctcgtg cgcgaccgac acggcataca
      721 catctacggg acgaacacga aggagcagca gattgacctg ggcgccctgc gccggggcga
      781 ggccgtcgag gtgagcttcg ccttcgactg ctggctcggc ctggggcagt tctccgtctc
      841 gctcgccgtt cacagcggcg acgggcgcgc gtatgactgg ctcgacggcg cgctcttctt
      901 ccgcgtcacg agcccgcggc tcatcgaggg cgtcgcgaac ctcaacgcga cggccgccgt
      961 gcgccgcctg tcgccgcgcc gcgccgaaga accgtcccgg ccgatgaacg tctgagggcc
     1021 tgagctatgg ttgaccagga agtagaagcc acgctgcggg agatacgcga gcgcgtgcgc
     1081 gccgaagcgg cgtcgcgcgc gccggcacag acggcccccg cgacaatcga gccgggcgcg
     1141 gcccccgccg ccgcggcgcg ggggacggct gccgacgcca tcgcgcgcat gcacgcgaac
     1201 gcggcgacga ccgagcgcgc gtggtcgcgc ctgccgccct tgatgagcta ccgctcgggc
     1261 gcggccgcgc gctttgagct ttggctcaag cggctcgtca agcgcgcggc gcactggttc
     1321 acatgggagc aggtgaactt taactcggcc gtccaccact cgctcgccga cgcgcgcgag
     1381 gcgctggccg cgcacgagca ggtaatcgaa cggctgcgcg cggaagtcgc ctcgctgcgc
     1441 cagtcgctcg aaaggcagat gcgcgccgag ctcgaagcgg agcgcgcgaa gtccgaggcg
     1501 cgccacgccg agtccgaggc gcgccacgcc gagctgggcg cgcgcatggc gcgggccgag
     1561 tcgcgcgccg agtcggagct tgcgcggctg ggcggtctga ttgcggatac cgccgcgcag
     1621 cttcgctccg agcaggccgc ttcggccgag agcctgagcg cggggcagcg cgagatactc
     1681 gaagcccttc gaggcgagct cgagtcttac gccgcggcgc tcaggcgcga ggcgcgcgag
     1741 caggtaagcg acgtgctcga agagcagcgc gtgtgcttcc gccagctctc gctcgaatcc
     1801 acggaggcgg ccgtcgcgca ggatcgcgcg cgccgcctca ccgagtcgcg cctcgaagcg
     1861 ctggaagcga agataagcgg cgggtgacgg gaggaacgcc gtccccgact cgtcgccttt
     1921 cacccatctt atggacgacc tctacaggcg ggccgggatc gaagacctgg cggagttcta
     1981 ccgcacgaag ttcacctcgg acgaggtgct cgacgcgcgc tacttccgcg cgctcgaccg
     2041 cttcgacatg cgcttcgccc gcacgatgtg ggtttacgac aacgtgcgcg cgggctccac
     2101 ggtgctcgac ctcgggtgcg gcgcaggcat gctcgcgctg ctcaagcgca agggcgtgac
     2161 gctcgtcggc gttgacatct ccgaggagtg cgcgctcgcc tcgcggcgca acggctacga
     2221 cgccactttc tcagccgcgc tcacgcggct ccccttcccc gacgtcgcat tcgactacgt
     2281 cgcgagcctc gacgtgctcg gccacgtcgc cttcgaggag aaggacgccg tgctcgggga
     2341 gattcgccgc gtgctccgcc cgggcggcgt cacgctccac ggcatagagt gcacggacag
     2401 gcgcgcgcaa aaatcctacg aggagatgac cgaggaggag ctgcggcgct tcgtggaggt
     2461 tgacggccac gtggggctcg aagaggagca ggagcacgcc gcgcgcttcc gccgcttctt
     2521 tgagcacgtc gcctgggagc cgcgctacgc gctctgcctc tcgtccgagg agttcgtcaa
     2581 gcaggccgag aagtacgggc tgcccttcga gtcggacttc gtcgagtacc tgcgcggcca
     2641 gaccttcgcc gagcgccggg ccttcgacat ggcgatgggc tacgtcttct cgaaaatctc
     2701 agacctgcac gtaaagctcc ccaaggccgg cctctacgtc ctcgtcaaag cctccgacgc
     2761 gccgctcggc cccttctaca acgagcaccg cgaccgcagc gccctcttca acacgactcc
     2821 gctggcgggc gcaccggcgg gccgcgtcgt ctgcctcgac cgcgatccgc gcgcagcctt
     2881 cgacgacggc tggtacgagc cgaaccttct gccgcccgtc gcgcgctgga tgcgcggccg
     2941 cgccgccgtg cgcttccgcg cgccttcgct ctccgccgtc cgcctcgacc tgacatcgca
     3001 catccctgac ctcggcgagc ggccgctcgg cctcgaagtc gcgctcaacg gcgagacgct
     3061 ctcagccctc tccctcttcc ggcaaggctg gctctccctc cgcctcgacg ttccgcccgc
     3121 cctctcggcc gcccaggact acgcgctcga aatccgcgcc gaccgcacct ggcgcccccg
     3181 ccccgacgac ccctccaaca ccgacgaccg cgagctctcc atcgccgtct gcaacatcga
     3241 gatagagccg tgaacgtaca ggagttcata gccaagtggc gaaaggtcga gttgacggag
     3301 cgttcggctt ctcagcagca cttcctcgat ttgtgcgagc tgttggagca cccgaagccc
     3361 gcggctgtgg acgcggccgg cgagtggttc acgttcgagc ggggcgcggc gaagcggggc
     3421 ggcgggcgcg ggtgggcgga cgtttggaag aaagacttct tcggctggga gtacaagggc
     3481 aagcacaaga gcctcgcggc ggcttacgag cagttgcagc tctaccgcga ggcgcttgag
     3541 aacccgccgc tgctggtcgt gtgcgacatg gagcgcgtcg tcgtccacac gaacttcacg
     3601 gcgacggtaa accgcgccta cgaaatccca ctcgaaggga tggccgagcc ggagaacctg
     3661 gaaatcctgc gctcagtctt tcacgcgccg gagcggctgc gcccgcaggc gaccgtggcc
     3721 ggcgtgacga ccgaggtggc cgagcggctc gccgcggtcg cccgcgccat gcgcgaccgc
     3781 gggctggagc cgcacgcggt ggcgcgcttc ctcgaccgca tcgtcttctg cctcttcgcc
     3841 gaggacgttg gcctcctgcc ccgcggactc ttcacgcaga tcgccgagcg ctcgcgcacg
     3901 cccgagagct tcgcgcgcca
//
LOCUS       DASPKR010000390         2181 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1865521, whole genome shotgun sequence.
ACCESSION   DASPKR010000390 DASPKR010000000
VERSION     DASPKR010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1865521"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..351)
                     /locus_tag="VD968_10565"
     CDS             complement(<1..351)
                     /locus_tag="VD968_10565"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018052520.1"
                     /note="part of NADH-ubiquinone oxidoreductase complex I;
                     shuttles electrons from NADH, via FMN and iron-sulfur
                     (Fe-S) centers, to quinones in the respiratory chain; NuoF
                     is part of the soluble NADH dehydrogenase fragment, which
                     represents the electron input part of NADH dehydrogenase;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit F"
                     /protein_id="HYE14872.1"
                     /translation="MFIGAIGCEPLQLRRVHLENSRSLEVYRKNGGYEALRKALSGMS
                     PDDVIAEVKKSSLRGRGGAGFPTGMKWGFVPKGSDKPKYVVCNADESEPGTFKDRYLM
                     ERDPHMLIEGMLIAA"
     gene            complement(365..922)
                     /gene="nuoE"
                     /locus_tag="VD968_10570"
     CDS             complement(365..922)
                     /gene="nuoE"
                     /locus_tag="VD968_10570"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF013426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HYE14873.1"
                     /translation="MSQQFTPNNPLPQEAKVPEEIAVFSAEVEAEMDRHLAKYPVKRS
                     AILPLMFIVQRERGYLDPPGVAYLADRLGVRVTDIWEVATFYSMINTEPVGRYHLQIC
                     KTLSCKILGAGKLTARCSERLGIKPGETTEDGMFSISEVECLGSCGTAPMMQIGFDYY
                     ENLTAEKVDEIIEKCRRGELDNGVR"
     gene            complement(919..2103)
                     /gene="nuoD"
                     /locus_tag="VD968_10575"
     CDS             complement(919..2103)
                     /gene="nuoD"
                     /locus_tag="VD968_10575"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HYE14874.1"
                     /translation="MVPHRPLDTQMTISFGPQHPSTHGVLRLELVLDGEMVVKCVPDI
                     GYLHTGMEKLFEYKKYQQGIVITDRMDYLNPLGNNLAYCMAVEKLLGIEIPERAQVIR
                     VMMCELQRIGSHMVWLGTHALDIGAMSVFFYAFRQRERILNLIEAASGERMTPSYFRI
                     GGLMMDLPAGFERRARQFSEDFPKAVEEWHDLLSGNRIFQSRTKGVGVISAEDAIDWG
                     LTGPPLRGSGVPLDIRRANPYCGYETYDFEVPVEQGCDVWARYMVRMREMVESNKIIR
                     QALDRLRPGPIKADAPKVVLPEREAMKQHMDALIHHFLIVAEGFNVPAGEVYQPIEGS
                     KGELGVYIKSDGGPKPARVHVRGPSFVNLSALPVMAEGEMVADVVAVIGSLDIVLGEI
                     DR"
BASE COUNT          361 a          709 c          701 g          410 t
ORIGIN      
        1 ggccgctatc agcatgccct ctatgagcat gtgcgggtcg cgctccatca ggtagcgatc
       61 cttgaaggtg ccgggctccg actcgtcggc gttgcagacg acgtacttcg gcttgtcaga
      121 gcctttgggg acgaagcccc atttcatccc cgtcgggaag ccggcgccgc cgcgccctcg
      181 cagcgaggac ttcttgacct cggcgataac gtcgtccggc gacatccccg aaagggcttt
      241 gcggagagcc tcgtagccgc cgttcttccg gtacacttcg agcgagcggg agttctcgag
      301 gtgaacgcgc ctgagttgta gcggctcgca gccgattgcg cctatgaaca taaacggtca
      361 ggccttagcg cacgccgttg tctaactcac cgcggcggca cttctcgata atctcgtcaa
      421 ccttttcggc cgtcaggttc tcgtagtagt cgaagcctat ctgcatcatc ggtgcggtgc
      481 cgcacgagcc gaggcactcg acttcggaga tcgagaacat gccgtcctcg gtcgtctcgc
      541 ccggcttgat gccgagccgc tccgagcagc gcgccgtgag cttcccggcg ccgagtatct
      601 tgcacgagag cgtcttgcag atttgcaggt ggtagcggcc aaccggctcg gtgtttatca
      661 tcgagtagaa ggtcgcgact tcccatatgt cggtgacgcg cacgccgagg cggtcggcga
      721 ggtaggccac gcccggcggg tcgaggtagc cgcgctcgcg ctgcacgatg aacatcaaag
      781 gcagtatggc cgagcgcttc accgggtact tggccaggtg cctgtccatc tctgcctcga
      841 cctccgcgga gaagacggca atctcctccg gcaccttcgc ctcctgcgga agagggttgt
      901 tcggcgtgaa ttgctggctc atctgtctat ctccccgagc acgatgtcga gcgagccgat
      961 gacggcgacc acgtcggcca ccatctcgcc ctcggccatc acgggcaggg ccgagaggtt
     1021 gacgaatgac gggccgcgga cgtggacgcg agccggcttc ggcccgccgt ccgacttgat
     1081 atagacgccc agctctccct tcgagccctc tatcggctga tagacctcgc cggcggggac
     1141 gttgaagccc tcggcgacga tgaggaagtg gtgtatgagc gcgtccatgt gctgcttcat
     1201 ggcctcgcgc tcgggcagca cgaccttggg cgcgtcggcc ttgatggggc cggggcgcag
     1261 gcggtcgagc gcctgccgaa tgatcttgtt cgactcgacc atctcgcgca tgcggaccat
     1321 gtagcgcgcc cacacgtcgc agccctgctc gaccggcacc tcgaagtcgt acgtctcgta
     1381 gccgcagtac gggttggcgc gtcgaatgtc taaggggaca ccgctcccgc gcaggggcgg
     1441 ccccgtcagc ccccagtcaa tcgcgtcctc ggccgagatg acgccgacgc ccttcgtgcg
     1501 gctctggaaa atcctgttgc ccgagagcag gtcgtgccac tcctcgacgg ccttcgggaa
     1561 gtcttcgctg aactggcgcg cgcggcgctc gaagccggct ggcaagtcca tcatcaggcc
     1621 gcctatgcgg aagtaggagg gcgtcatgcg ctcgcccgac gccgcctcga tgaggttcag
     1681 aatcctctcg cgctgccgga aggcgtaaaa gaagaccgac atcgcgccga tgtccaaggc
     1741 gtgcgtcccc agccagacca tgtgcgagcc gatgcgctga agctcgcaca tcatcacgcg
     1801 gattacctgc gcgcgctcgg gaatctcaat cccgagcagc ttctcgaccg ccatgcagta
     1861 ggcgaggttg ttgccgagcg ggttgaggta gtccatccgg tcggtgatta ctatgccctg
     1921 ctggtacttc ttatactcga agagcttctc catccccgtg tgcaggtagc cgatgtcggg
     1981 gacgcacttg acgaccatct cgccgtcgag gactagctcg agccgcagca cgccgtgcgt
     2041 ggacgggtgc tgcggcccga acgagatggt catctgcgtg tcgagcggcc ggtgcggaac
     2101 caccagaagc cctccggccg ggtgctgatg gcgtcgcgca gcgtctcgtc ggagtagcgc
     2161 tcgttgccgc ggaagtccac g
//
LOCUS       DASPKR010000391         3807 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1348714, whole genome shotgun sequence.
ACCESSION   DASPKR010000391 DASPKR010000000
VERSION     DASPKR010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3807)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3807
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1348714"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..1641
                     /locus_tag="VD968_10580"
     CDS             130..1641
                     /locus_tag="VD968_10580"
                     /inference="COORDINATES: protein motif:HMM:NF017142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14875.1"
                     /translation="MKKRLLLKNSCLLAGALLCLFLIGGEVPAAPLEVKIRIVSASPP
                     RARVEGRRAEGATAWSLRNFYGSAAGLAERVENLSLADDGGAGVPARKLAPGEFLAER
                     AATRFSYDFRLDPPAFINDAAHVSWLAGEHGVLMLADLLPLPLSAAKVSLALPAGWGV
                     STLEPGGDRSEYDVRDAERAVFVIGRDLRVKRRSAGRTGLNFTAAGEWAFGDDEAADS
                     AVEILKTYAETMGGTPRGGVMLALLPWPQPIAANLWSAEARGGTVVLVSGRLPSKLAA
                     TAQLNAALAHELFHLWVPNGLALDSDYDWFYEGFANYQSLRAGLRLGHLTFQDYLAAI
                     GRAFDIYKSARGAKEITLAEASQRRWSGGSRLVYSKGMLVAALYDLNLMLRTGGRRSI
                     DEVFRELFERHREGREREDGNAAVVRLLGGVSGMEEFTARFVRGAEPIDLAQSINAFG
                     LVVEPGGVRTHLGVAKTLERPQRELLRKLGYNENLEAEARKAREQLKGRRPPE"
     gene            1694..2821
                     /locus_tag="VD968_10585"
     CDS             1694..2821
                     /locus_tag="VD968_10585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0070064 - proline-rich region binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HYE14876.1"
                     /translation="MKLVKSLPLLALAALLTGCSTFAGKEETGVVIALRAQVRSSTAV
                     VAADLKEVVRGDVVEILDEVTVQETGERWLRVRTRGSGDTEGWIEARNVISQEMVERS
                     RQIAKEDEGIPAQASGQLRASTNIRFSPDRSGNDNILMKLESGARFDIVGWKRVPRPK
                     SLETAESDDAPKAGSAGQTSARRGRGSRESDEEKEPEEVNELWYKVRLPPSLAPAPAG
                     WVFGKQVELTVPSDIIFYRTGREFVAWRRLDGDDSEGSQAQPKDKDAAKESRPGSWVI
                     LEKSSTGDVNSPDSPDFDRIYVLGYDKDRQEHYTVYRSPDVRGFLPLRVEGGEDDKTF
                     AVRAQDADGQMKDVKFRTYINERGLLKVEALTELPKAAKPK"
     gene            3387..>3807
                     /locus_tag="VD968_10590"
     rRNA            3387..>3807
                     /locus_tag="VD968_10590"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          765 a         1162 c         1250 g          630 t
ORIGIN      
        1 cgcaaccacc tctccttcat aaaggagctg gcgcccgaga taggccgcgg ccttcgtttc
       61 acctacacca tccgcttctt ctaaggggga cgacagaacc gccggtgtgc tttaattgcg
      121 cgcgtcgaga tgaagaaaag attgcttctt aaaaattcct gcctgctggc cggcgcgctc
      181 ctttgcctct tccttatcgg gggcgaggtg ccggccgccc cgctcgaagt caagattaga
      241 atcgtctcgg cgagcccgcc gcgggcgcgt gtcgagggca ggcgcgcgga gggcgcgacc
      301 gcctggtctt tgcgcaactt ttacgggagc gcggccgggc tggccgaaag agtcgagaac
      361 ctctcgctcg cagacgacgg cggcgcagga gtgcctgcgc gcaagctcgc ccccggcgag
      421 ttcctcgccg agagggccgc gacgcgcttc tcatacgact tcaggcttga cccgccggcc
      481 ttcatcaacg acgcggcgca cgtctcctgg ctcgcgggtg agcacggcgt gctcatgctc
      541 gcagacctcc taccgctccc gctctccgcg gcgaaagtca gcctcgcgct cccggccggg
      601 tggggcgtct cgaccctaga gccgggcggg gacagaagtg agtatgacgt gcgcgacgcc
      661 gagcgcgccg tcttcgtcat cggccgtgac ctgcgcgtga agcgacggag cgcgggccgc
      721 acgggtctca acttcactgc tgccggcgag tgggcgttcg gcgacgacga ggccgccgac
      781 tcggccgtag agattctgaa gacctacgct gaaactatgg gcggcacgcc gcgcgggggc
      841 gtcatgctcg cgctcctgcc ctggccgcag cccatagcag cgaacctctg gagcgccgag
      901 gcgcgcggcg gcactgtcgt cctcgtctca ggccgcctgc cctcgaagct cgccgcgacg
      961 gcgcagttga acgcggcgct cgcgcacgag ctttttcacc tctgggtgcc gaacggcctc
     1021 gcgctcgaca gtgactacga ctggttctac gaaggcttcg ccaactacca gtcgctccgc
     1081 gcgggcctcc gcctcggcca cctgaccttc caggactacc tcgccgccat cggccgggcc
     1141 ttcgacatct acaagtccgc ccgcggcgcg aaggagatta cgctcgccga ggcttcgcag
     1201 cgccgctggt cgggcggctc acgcctcgtc tatagcaagg ggatgctcgt cgcggccctc
     1261 tacgacctca acctaatgct acggacgggc ggccgccgct cgatagacga ggttttccgc
     1321 gagctgttcg agcgccaccg cgaaggccgg gagagggaag acggcaacgc cgcagtcgtc
     1381 aggctcctcg gaggcgtgtc ggggatggaa gagttcacgg ctcgcttcgt gcgcggcgcc
     1441 gagccgattg atctcgcaca gtcaatcaac gccttcgggc tggtcgtcga gccgggcggc
     1501 gtgcgcacgc acttgggcgt cgctaaaact ctcgaacggc cgcagcggga gttgctgcgc
     1561 aagttgggtt acaatgagaa cctggaagcc gaggcgcgca aggcccgcga gcagttaaag
     1621 ggccggcgcc cgcccgaata aactgcggca ttcttagatc agaaatatcc ggcctcggcc
     1681 ctccccttcg aacatgaaac tcgtaaagtc gcttccactc ttagccctcg cggctctcct
     1741 cactggttgc agtacctttg ccggcaaaga agagacgggc gtcgttatag cgctgcgggc
     1801 tcaggttcgc agctcgacgg cggtcgtcgc cgccgacctg aaggaggtcg tgcgcggcga
     1861 cgtggtcgag atactcgacg aggtcacggt gcaggagacg ggcgagcgct ggctgcgcgt
     1921 gcgcacgcgc ggctccgggg acacggaagg gtggatcgag gcgcgcaacg tcatctcgca
     1981 ggagatggtc gagcgctcgc gccagattgc caaagaggac gagggcatcc ccgcgcaggc
     2041 ctcgggccag ctacgcgcca gcaccaacat aaggttctct cccgaccgca gcggcaacga
     2101 caacatcctt atgaagctcg aaagcggcgc gcggttcgac atcgtaggtt ggaagcgagt
     2161 gccgaggccg aagtctcttg agacggccga gagcgacgac gctccgaagg ccggctcagc
     2221 cgggcagacg agcgcgcggc gcggccgagg gagccgtgag agcgacgagg agaaggagcc
     2281 cgaggaggtc aacgagctct ggtacaaagt taggctgccg ccctccctag cacccgcgcc
     2341 tgccggctgg gtcttcggca agcaggtcga acttactgtg ccgagcgaca taatctttta
     2401 ccgaacgggg cgcgagttcg tcgcctggcg caggctcgac ggcgatgatt ctgaaggctc
     2461 gcaggcgcag cccaaagaca aggacgccgc gaaggagtcg aggcccggca gttgggtgat
     2521 tctggagaag agcagcaccg gcgacgtgaa cagccccgac tcccccgatt tcgacaggat
     2581 ttacgtgctc ggttatgaca aagaccggca ggagcactac accgtctatc gtagcccgga
     2641 cgtgagaggc ttcctgccct tgcgagtcga gggcggcgag gacgataaga ccttcgccgt
     2701 cagggcgcag gacgccgacg ggcagatgaa ggacgtgaag ttcaggacgt acataaacga
     2761 gaggggcctg ctgaaggtcg aggccctgac cgagctgccc aaagccgcga agcccaaatg
     2821 agcctgccgg ggagttaccc gcgcgttaag cggcggcgag ccggcccgga aagttttttg
     2881 aaaaatcttc gcctaggcgg ttgacaatga ctcggggatg tctataatgc ctctttgcct
     2941 gaaacacggc agttgacatc tcaatcaact aaagagcgcg tttgacgagc cgcttctctt
     3001 tcaaaggcta ttcgtgggag ggggcggctg tttcatcggc aaaagtcggg aggagtcgaa
     3061 tatctcgcct cgacggcggc cggcgggcaa cccggaaggg cctctgcgct tccaagtccg
     3121 acgcgcttga caattgagcg tggcttcgga taaagtcaca gtttccttga ggcgaggaaa
     3181 agtcgcctga agggcaacca aaagaatcct gagacatcta aatctggatt cgctgaagac
     3241 aagcgatctt tgaaaactag atagagcgtg tcccaaagat gacctttgag agcgacgccg
     3301 cgcgataaag cgcagcgtac tcaaaactcg aaagagtcat catcgaacaa cattggtata
     3361 aaccagtgtg atgatgttcc agagatacaa acgagagttt gatcctggct cagaatcaac
     3421 gctggcggcg tgcctcagac atgcaagtcg aacgcgaaag gccccttcgg gggccgagta
     3481 gagtggcgtc cgggtgagta acacgtgggt aatctacctt cgggtgggga ataacgaccg
     3541 gaaacggtcg ctaataccgc ataatgcagc ggcacctaat ggtgacagtt gttaaagcgg
     3601 gggatcagca atgacctcgc gcctgaagag gagcccgcgg cggattagct agttggtggg
     3661 gtaacggccc accaaggcaa cgatccgtag ccggcctgag agggcggtcg gccacactgg
     3721 cactgacaca cgggccagac tcctacggga ggcagcagtc gggaattttg ggcaatgggc
     3781 gaaagcctga cccagcaacg ccgcgtg
//
LOCUS       DASPKR010000392         3945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_313661, whole genome shotgun sequence.
ACCESSION   DASPKR010000392 DASPKR010000000
VERSION     DASPKR010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3945)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3945
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313661"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            93..938
                     /locus_tag="VD968_10595"
     CDS             93..938
                     /locus_tag="VD968_10595"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HYE14877.1"
                     /translation="MRFKRFTGWLLLLPLLLAQAGCGWANVAGSGAREHFRPGFNLFS
                     PEQDVELGNASAEEMARQVRLVGDERVVAYVRRTGERLAAETTGHAFPYKFYVVDAGE
                     VNAFALPGGHVYVNAGAIAAARNEGELAGVLAHEIAHVSLRHGTNQASKAYVAKAGLG
                     LLGALAGGGGGDVGSALAAAGGAYANAMFLKFNREAETQADLEGARLMAAAGYDPRDM
                     ARFFEKLGGGPEEGASETSSDHPEPRSRVAAINGLAPSLRIERPAARDAGEFRRVKSR
                     LSALR"
     gene            complement(948..2468)
                     /locus_tag="VD968_10600"
     CDS             complement(948..2468)
                     /locus_tag="VD968_10600"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYE14878.1"
                     /translation="MSITARLLDRLADTRLAADERARLRVRLSREHLDSGDYDAALEA
                     LDALWPQLGARPRLEGLGAAARAELLLHAGVLTGFVGSHRRVDGAQEQAKNLISEALN
                     AFEEMGDRERVAEARAELAYCYWREGAFDEARVLLEEALRGLGQSETEARALALVRLA
                     IVERSAGRFREALRAHQGSAAFFERLQSHSLKGRFHVGLAETYRHLAESEARGDYTDR
                     AFIEYEAAAFHFSAAGHERYRAAVENNIACLLLFVGRHAQAHEHLDRARSIFDALGDG
                     VRAAQTDETRARVLLAEGRLEEAERTARAAARALEHCDEAALFADALMTLGTVLARHG
                     RREEARTLLSSAEEAALRAGAPEAAGRAALAAAEELGDEMLPREFGALFERAAERLAG
                     SQQPGVRDRLNACALRFVKARAPVLDMPWRAARDGGAWDGFSLRREVLRYEAELIEKA
                     LRDAGGSVSRAAKLLGFRHHQTFVALLNNRHRELLHARNPIAPRKGKSSAHRRRRA"
     gene            complement(2772..>3945)
                     /locus_tag="VD968_10605"
     CDS             complement(2772..>3945)
                     /locus_tag="VD968_10605"
                     /inference="COORDINATES: protein motif:HMM:NF015427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PCRF domain-containing protein"
                     /protein_id="HYE14879.1"
                     /translation="SAIEFLLERGFTADLGARPLKRAVERYLLAPLAVTIVNHQFPEG
                     DQFLFVRAAPDGLSLDVRFVDPDAPEEEAGAAAPASAIEEDEGVAVSEGLRVETIALD
                     PRGAAEEVQLLRERLDELAAKVGGEEWRRRKAEALEQTQAPGFWSSPGRFGVLGLAEY
                     MDRIEAGLDTAGSLLARLRGDRKRLPPDLVGRLAEQLYLLDSALRGFAEGDARDAFLL
                     VRALREPGSDPELCDRFARRLASMYRRWAERRRMRFEMLDESGGVDESDNGAAAAGEY
                     RALMAVSGYAAFTILRPESGFHVFETPQDEKGFSRARVLVRVVGQPEEPAGHGEGALR
                     RQAERALAEDDACAQQQQHAVVRRYREEPSPLVRDSARGWRTGKIERVLEGDFDLI"
BASE COUNT          567 a         1375 c         1436 g          567 t
ORIGIN      
        1 ccctcccggc gtgagcgcgt gggcgcgggc gcgcggcctg ctatttgcaa tcggcggggt
       61 cagtctgcga gcagaggggg aagtctgggg gcgtgcgttt taagaggttc acgggctggc
      121 ttttactact gccgctgctg ctggcgcagg cgggctgcgg gtgggcgaac gtcgcgggct
      181 cgggcgcgcg tgagcacttc cggccgggct tcaacctctt cagcccggag caggacgtgg
      241 agctgggtaa cgcttcggcc gaggagatgg cgcggcaggt gcgcctcgtc ggggacgagc
      301 gggtggtcgc gtacgtccgc cgcacgggcg agcggctcgc ggccgagact acgggccacg
      361 ccttcccgta caagttctac gtcgttgatg cgggcgaggt gaacgccttc gcgctgccgg
      421 gcggccacgt ctatgtcaac gcgggcgcaa tcgccgcggc gcgcaacgag ggtgagctag
      481 ccggcgtgct cgcgcacgag atagcgcacg tctcgctcag gcacgggacg aatcaggctt
      541 ctaaggctta cgtggcgaag gcgggcctcg ggcttctggg cgcgcttgcc ggcgggggcg
      601 ggggagacgt gggcagcgcg ctcgcggcgg cgggcggcgc ctacgccaac gcgatgttcc
      661 tcaagttcaa ccgcgaggcc gagacgcagg ccgacctcga aggcgcgcgg ctgatggccg
      721 ccgccggcta cgacccgcga gacatggccc gcttcttcga gaagctcggc ggcggccccg
      781 aagagggcgc ttctgaaacc tccagcgacc atcccgagcc gcgcagccgc gtcgccgcca
      841 tcaacgggct ggcgccctca ctgcgcatag agcgcccggc cgcgcgcgac gccggtgagt
      901 tccggcgcgt gaaatcgcgc ctctccgctc tacgttagtg cgtcggctta cgccctgcgg
      961 cgcctgtgcg cggaggattt acccttgcgc ggggcgatcg ggttacgggc gtgcagaagc
     1021 tcgcggtggc ggttgttgag cagcgcgacg aaggtctggt ggtgacggaa gccgaggagt
     1081 ttcgccgcgc gcgacacgga gccccccgcg tcgcggagcg ccttctcaat cagctccgcc
     1141 tcgtagcgca gaacctcacg cctgagtgaa aacccgtccc aggcgccgcc gtcgcgtgcc
     1201 gcgcgccacg gcatgtcgag gacgggcgcg cgcgccttga cgaagcggag cgcgcaggcg
     1261 ttcagacggt cgcgcacgcc cggctgctgc gagccggcga gccgctcggc cgcgcgctcg
     1321 aagagcgcgc cgaactcgcg cggcagcatc tcgtcgccaa gctcttcggc cgcggcgagc
     1381 gccgcgcgcc ccgccgcctc gggcgcaccg gcacgcaggg ccgcctcctc ggcgctagag
     1441 aggagcgtgc gcgcctcctc gcgacgaccg tgccgcgcga gcacagtccc cagagtcatc
     1501 agcgcatcgg cgaagagcgc ggcctcgtcg cagtgctcca gcgcccgggc ggcggcgcgg
     1561 gccgtgcgct cggcctcttc gaggcgccct tcggcgagca gtacgcgcgc ccgcgtctcg
     1621 tcggtctgcg cggcgcgcac cccgtcgccg agcgcgtcga agatcgagcg agcgcggtcg
     1681 aggtgctcgt gcgcctgggc gtggcggccg acgaagagca gcaggcaggc gatgttgttc
     1741 tctaccgcgg cgcggtagcg ctcgtggccc gccgcggaga agtggaaggc ggctgcctcg
     1801 tactcgatga aggcgcggtc ggtgtagtcg cccctcgcct cggattcggc gaggtggcgg
     1861 taggtctcgg cgagccctac gtggaagcgc cccttgagcg aatgactttg cagacgctcg
     1921 aagaaggcgg ccgagccttg gtgggcgcgc agcgcctcgc ggaacctccc ggccgagcgc
     1981 tccacgatgg cgaggcgaac gagcgctagc gcacgcgcct ccgtctcgct ctggcctaag
     2041 ccgcgcagcg cctcttccag aaggacgcgc gcctcgtcga aggcgccctc gcgccagtag
     2101 cagtaggcca gttcggcgcg cgcctcagcg accctttcac ggtcgcccat ctcctcgaag
     2161 gcgttcaggg cctcgctgat taaattcttc gcctgctcct gcgcgccgtc cacacgcctg
     2221 tggctgccga cgaagccggt cagcacgccg gcgtgcagca ggagctctgc gcgcgccgcg
     2281 gcgcccaagc cttcgaggcg cgggcgcgcg cccagttgcg gccagagggc gtcgagcgct
     2341 tcgagcgcgg catcgtagtc gccggagtct aagtgttctc tggagaggcg cacgcggagc
     2401 cgcgcgcgct cgtctgcggc cagacgggtg tcggcgagcc ggtcaagcaa ccgggcggtt
     2461 atgctcatcg tgaggctacc tttctgtagc ccgcgggggc cggccgtctt gcgcgggggc
     2521 ggccgccgcg gacgccgggc tactggggca agtcgcccgg cgcggcctag ttttaccgtc
     2581 cttccgagtt cgcgtgctga aatgaaccga aaaaacgaga gaggctttcg cctcggggcg
     2641 ggcggcagct taaatccaac gcgggacgaa aagcaagaaa atttcggaag tgaagaatgc
     2701 ggagcgcaga gcgcagaact gaagacaggg cgcttaaatt cagcgctcag cgctccgcat
     2761 tccgcaccct cttaaatcag gtcgaagtcg ccttcgagga cgcgctcgat cttgccggtg
     2821 cgccagccgc gggccgagtc gcgcacgagc ggggagggct cttcgcggta gcggcgcact
     2881 accgcgtgtt gctgctgttg cgcgcacgcg tcgtcttcgg cgagggcgcg ctcggcctgc
     2941 cggcgcagcg cgccctcgcc gtggcccgcc ggctcctcgg gctgaccgac gacgcgcacg
     3001 agcacccgcg cgcggctgaa acccttctcg tcctgcggcg tctcgaagac gtggaagccc
     3061 gactcgggcc gcaggattgt aaaggccgcg tagccggaga cggccatgag cgcgcggtac
     3121 tcgccggccg cggcggcgcc gttgtcgctc tcgtccacgc cgccgctctc gtccagcatc
     3181 tcgaagcgca tgcggcggcg ctccgcccaa cggcggtaca tgctcgcgag cctgcgcgcg
     3241 aagcggtcgc aaagctcggg gtcggagccg ggctcgcgca gcgcgcgcac cagcaggaag
     3301 gcgtcgcgcg cgtcgccctc ggcgaagccg cgaagggcgg agtcgagcag gtagagctgc
     3361 tcggcgagcc ggccgactaa gtcgggcggc aggcgcttgc ggtcgccgcg caggcgcgcc
     3421 agcagcgagc cggccgtgtc tagcccggcc tctatcctgt ccatgtactc ggcgagcccc
     3481 agcacgccga agcggccggg agaagaccag aagccgggcg cctgcgtctg ctctaaagcc
     3541 tccgccttcc gcctccgcca ctcctcgccg cccactttcg ccgctaactc gtcgagcctc
     3601 tcgcgcagaa gttgaacctc ctcggccgcg ccgcgcgggt cgagcgcaat cgtctcgact
     3661 ctcaggccct ccgagacagc gaccccttcg tcctcttcga ttgccgaggc gggcgctgcc
     3721 gcgccagcct cttcctccgg cgcgtcaggg tcaacgaagc gcacgtcgag cgagaggccg
     3781 tccggcgcgg cgcgcacgaa gaggaactgg tcgccctccg ggaactggtg gttgacgatt
     3841 gtcacggcga gcggcgcgag caggtagcgc tcgacggcgc gcttgagcgg gcgcgcgccc
     3901 aggtcggccg tgaagccgcg ctccaacaaa aactcaatcg ccgac
//
LOCUS       DASPKR010000393         2544 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_444026, whole genome shotgun sequence.
ACCESSION   DASPKR010000393 DASPKR010000000
VERSION     DASPKR010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2544)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2544
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444026"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..327)
                     /locus_tag="VD968_10610"
     CDS             complement(<1..327)
                     /locus_tag="VD968_10610"
                     /inference="COORDINATES: protein motif:HMM:NF013570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase-related protein"
                     /protein_id="HYE14880.1"
                     /translation="MTMTGNEIREKFLSYFEKNGHRRVPSSPLLPANDPTLLFANAGM
                     NQFKDVFLGVEQRDYARAASSQKCLRAGGKHNDLDEVGKTARHHTFFEMLGNFSFGDY
                     FKEDAVR"
     gene            complement(416..985)
                     /locus_tag="VD968_10615"
     CDS             complement(416..985)
                     /locus_tag="VD968_10615"
                     /inference="COORDINATES: protein motif:HMM:NF014668.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein RecX"
                     /protein_id="HYE14881.1"
                     /translation="MPFRKKRPRVKPEGEAGERPRGPLDPEKARERTLQRAVKLLAAK
                     PRSVAELRERLLEKEWADEEAADYALMKLKEYGYLDDDRFAFGFASYRVRQKPVGRQR
                     LARDLQTKKVSKETADAALELVYQETPEEELIERAIEKRARLRGRPKTRQETKSLYDH
                     LLRLGFSYDLIMRKVREASSADAGEDDAD"
     gene            1039..1980
                     /gene="truB"
                     /locus_tag="VD968_10620"
     CDS             1039..1980
                     /gene="truB"
                     /locus_tag="VD968_10620"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HYE14882.1"
                     /translation="MDGVLVIDKPEGWTSHDVVARVRRVLRERRVGHTGTLDPFATGV
                     LVVLVGRATRLAQFLSGAEKEYEAVIRLGYSTTTGDLTGERREAAAPSVDCSALTPEQ
                     IEAALSRLRGEIEQVPPMYSAKKVAGRKLYELARRGEEIERQPVRVLVSVFEVVTGGC
                     GAWARRGDDGTCDLRARVVCSAGTYVRSLAESLGELLGTGAHLAALRRTRAGALCIEQ
                     SLTLERLEELASSGVEFLTRPDAALPGMPSRHLTAEEARSALIGRPVGAAPLASGELE
                     EGEHVRLLGEDGRLLSVGVYDSARGLVWPRVTLAAGK"
     gene            2272..>2544
                     /locus_tag="VD968_10625"
     CDS             2272..>2544
                     /locus_tag="VD968_10625"
                     /inference="COORDINATES: protein motif:HMM:NF019902.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14883.1"
                     /translation="MQEQDGSNNFDITRRLEELRREHAALQWEGSFRDYFELVTQNPR
                     LAQLSHARINDMIHAAGVEKLNEGTRDEIARYKFFSSELFGIEEPIA"
BASE COUNT          400 a          820 c          886 g          438 t
ORIGIN      
        1 gcggacggcg tcctccttga agtagtcgcc gaaggagaag ttcccgagca tctcgaagaa
       61 ggtgtggtgg cgcgcggtct tgcctacctc gtccaagtcg ttgtgcttgc cgccggcgcg
      121 caggcacttc tgcgaggagg cggcgcgcgc gtagtcgcgc tgctcgacgc ccagaaacac
      181 gtccttgaac tggttcatgc cggcgttggc gaacagcagc gtcgggtcgt ttgcgggcag
      241 cagcgggctc gaaggcacgc ggcggtggcc gttcttctcg aaatagctaa ggaatttctc
      301 gcgaatctcg ttcccggtca tggtcataag gcactgtcct gaattccgtc ctccggcgaa
      361 aagggaattt taacacgcgg cacgcggggg gagaaattga ggcccgcggg gcgattcagt
      421 cggcgtcgtc ttcgcccgcg tcggcagacg aagcctcgcg caccttgcgc atgatgaggt
      481 cgtaagagaa accgaggcgc agcaggtggt cgtagaggct cttggtctcc tgtctcgtct
      541 tggggcggcc gcgcaggcga gcgcgcttct cgatggcgcg ctcgattaac tcctcctcgg
      601 gcgtctcctg atagacgagc tcgagggcgg cgtcggccgt ctccttcgag accttcttcg
      661 tctgtaagtc gcgcgcgagg cgctggcgcc cgaccggctt ctggcgcacg cggtaggagg
      721 cgaagccgaa ggcgaagcgg tcgtcgtcga ggtagccgta ctccttgagc ttcatgagcg
      781 cgtagtcggc cgcctcctcg tccgcccact ccttctcaag caggcgctcg cgaagctccg
      841 ccaccgagcg cggcttggcg gcgagcagct tcacggcccg ctgcaaagtg cgctcgcgcg
      901 ccttctccgg gtcgagtggc ccgcgcgggc gctcccccgc ctcgccctcc ggctttactc
      961 tcggcctctt ttttctgaat ggcacgcggc tatgctaacg cccgccgcgg gggccggcaa
     1021 gctgctaaaa ttcttcgcgt ggacggcgtt ctcgtcatag acaagcccga ggggtggact
     1081 tcgcacgacg ttgtggcgcg cgtgcgccga gtgctgcgcg aaaggcgcgt gggccacacc
     1141 ggcacgctcg accccttcgc cacaggggtt ctcgtcgtgc tcgtcgggcg cgcgacgcgc
     1201 cttgcgcagt tcctctcggg cgccgagaag gagtacgagg ccgtcatacg tctcggctac
     1261 tcgacgacga ccggcgacct gacgggcgag cggcgcgagg ccgcggcccc atcggttgac
     1321 tgctcggcgc tcacgcccga gcaaatcgag gcggcgcttt cccggttgcg cggcgagata
     1381 gagcaggtgc cgccgatgta ctcggcgaag aaggtagcgg ggcggaagct ctacgagctc
     1441 gcccggcgcg gcgaggagat agagcgccag cccgtgcgag tcctcgtaag cgtctttgag
     1501 gtcgtcacgg gaggctgcgg cgcatgggct cgccgcggcg acgacgggac gtgcgatttg
     1561 cgcgcgcgcg tcgtctgctc ggccgggact tacgtgcgct cgctcgccga gtcgttgggc
     1621 gagcttctcg gcacgggcgc gcacctcgcc gcgctcaggc gcacgcgcgc gggcgctctc
     1681 tgcatcgaac agtcgctcac gctggaaagg ctggaggagc tggcctcctc gggcgtcgag
     1741 tttctgacgc gccccgatgc ggcgctcccc ggaatgccct cccggcatct aacggccgag
     1801 gaggcgcgct cggcgctcat cggccgcccc gtcggcgcgg cgcctttggc ctcgggcgag
     1861 ttggaggaag gcgagcacgt gcggctgctc ggcgaagacg ggcggctgct atcggtcgga
     1921 gtttacgact cggcgcgcgg gctcgtctgg ccgcgcgtga cgctggcggc cggaaaataa
     1981 gtgttgacgg gcgccgtcag ttgctgtgct atacttagcg tcaacagagg gccgggaacc
     2041 gctttcccct tccaggacaa cccgttcgtt gaagagtcgt tcctaagcct cgaaggcgcg
     2101 gcgggcgctg gcgccccgca cctggcgcat cgaggcagct caaaaaaagg cgaccgaaga
     2161 ggccccggcg agagggccca tcgcggtcgc cgaagctttc ggcgggcgtg acgagagaag
     2221 cacgccgtcc taaagcgcgc ggagccgatt taagaggttt ttaagaggct tatgcaagag
     2281 caggatggca gcaataattt cgacatcacg cggcggctcg aagagctgcg gcgcgagcac
     2341 gcggccctcc agtgggaggg ctccttccgc gactacttcg agctggtgac tcagaacccc
     2401 cgcctcgcgc agctctcgca cgcccgcatc aacgacatga tccacgccgc gggcgtcgag
     2461 aagctcaacg aaggcacgcg cgacgagata gcccgctaca agttcttctc ctcggagctg
     2521 ttcggcatag aggagccgat tgcg
//
LOCUS       DASPKR010000394         9896 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_699905, whole genome shotgun sequence.
ACCESSION   DASPKR010000394 DASPKR010000000
VERSION     DASPKR010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9896)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9896
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_699905"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1602)
                     /locus_tag="VD968_10630"
     CDS             complement(<1..1602)
                     /locus_tag="VD968_10630"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HYE14884.1"
                     /translation="MPHDLPLLGDLLLILLASVPMAFAFHRLRLPTIVGFMITGVVIG
                     PYGLRLIRDAHAIEALAEIGVVLLLFTIGLEFSLRRIVEMRRLVLAGGGMQVVITTLL
                     VTAAAYLWGRPLSQALFFGFLFALSSTAIVLKSYIDRAEVDAPHGRAGVGILLFQDLS
                     IVVMMLLVPVLGGREGASASRLALTLGAALAAVAVIILAARKAVPSLLYQIVRLRSPD
                     LFIIFVVLMSLGTAWLTSQFGLSLALGAFIAGMVLSESEYSHQIVADILPFRDVFNSI
                     FFVSIGMLLSLSALWADLPTVLAWVAALVAGKAAVVLAVVRLLGYSLRVSTMAALGLA
                     QVGEFSFILARAGLPQGLLTEADYQRFLAASILSMIATPFLIKAAPRLGYAVQNFFSP
                     GSVLEPSVADFRPEEAGLRGHVVIVGYGLNGNNLARVLRKVGVPYVILELNAEAVREA
                     GARGEQIVYGDATRREVLHYAGVERARILVIAISDPVATRHTASLVRQMNPDIHIIVR
                     TRYMSELQDLRALGADDVIPEEFETS"
     gene            1799..4594
                     /locus_tag="VD968_10635"
     CDS             1799..4594
                     /locus_tag="VD968_10635"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4214 domain-containing protein"
                     /protein_id="HYE14885.1"
                     /translation="MRLRRRARLTLTAAGVILACMLAAAQTARPVECARRAAEPAVGA
                     PRLAALSLADFAAVGDGLTDDGPALQRALDALAEAGGGTLFVPAGRYAISTPVVKDFG
                     GAASSVSILGVASGTPVAPPTAGGPELTRGLDLTSEFLPRTGEEAVALRISGLESFLI
                     RDVAFVGTPEVATDAAVTLALDSVGSAAVRHCEFYGLSSMVEGGAVVLASRSSLAVEE
                     SVFLGSTGASGNYVAVVQNILWKGVRVERTVFADYGWRRESYGKMSMGAPYSWVNVAE
                     AAPPEPASPRREVVVRDVFFDEGGLAGLATIALGGEPAPADLIYVTGLHMNVSNLGAS
                     GNYIESQRGAMIDRSRYGWSQNADSAISLVGVGEGLISGVECAAAADRIRADAATGKL
                     TVVNSVYTHLDSLAQVTEVLSTAAPEENPVEYVRAQFEQTAGRAPDAAAHFYWSRMLL
                     GCSADAECLAGARAALAAYLAGSPAETFRLSGRVVGEGGAGLAGVKVELSGSQSVAAV
                     TDADGGYSFEGLPTSGAYVVTPSLEGFVFNPRSRSVENPGADQRVEFVSAPEPSLSFA
                     AAAHTATEGSHSYAVAVRREGEASAAASVVFTASDGTARQGRDVSTVVGRLNFAPGER
                     ECAFEVFITDDAFAEPDEQLTLSLEGPEGAELGALSTATLTIKDNDDAPAPSNPADNS
                     EFFVRQHYRDFLNREPDEGGLRFWVNEIEKCGADAQCREVRRINVSAAFFLSIEFQET
                     GFLVYRLYGAAYGRAPRRVEEFLLDARLIGDGVVVGAPGWAQKLEANKEAFVEAFVAR
                     HEFAREHPASLKPAEFVARLNERAGGPLTTEELAAAESEFGGAADTSDAAARRRALML
                     VAENASYRRREFNRAFVLMQYFGYLQRNPDDPPDAGLDGLLYWLKKLDDAGGDYHRAE
                     MVRAFLDSIEFRTRFAP"
     gene            complement(4637..>9896)
                     /locus_tag="VD968_10640"
     CDS             complement(4637..>9896)
                     /locus_tag="VD968_10640"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HYE14886.1"
                     /translation="TSEGGVFKTTDGGANWSKTSNGLTTTFVHRVVVSPQTPSTVYAT
                     SIFGVHKSVDGGAGWATSLANGFAGDIVVDPQNNSNAYVIATVGASLGTIYKTTDGGA
                     TWRKSGAGLLGQLAALGIDPLTPSNLYTASNVFGLVDADAFVLKLNAAGTALEYSTPL
                     GGTAGGGSDGGAHDYGTGIAVDSSGAAYVSGWTLSIDFPVSSQEVYQVANRGNYEGFI
                     AKLSPSLRIAGRVADAQGNAQAGVKVTLSGSLVSFTTTGADGLYEFDGLAAGGSYTVS
                     ATKAGFAFAPPSQTFDNLSASQSLDFTASASGAAFFQISGRVTEAGTGLALPGARVAL
                     AGSQIEFATTDGEGRYSFTAPGGGSYTLTASSLGFAFAGGPVSIANLSADRTADFAGA
                     RQTLVVTSTNDHGAGSLRQAILDANSMAGADRITFNIPGSGVRTISPVSPLPEITGTV
                     ELDATTQPGFAGTPVVELSGAQAGGGGAAGLTVAASNCLVRGFVINRFNGANGIRIAA
                     GEGSRVEGNYIGTDAAGEAARPNHTGVAIGIASNNNRIGGPAPSQRNVISGNTFGGVT
                     IASAGNRVQGNFIGTNAAGTTPLGNGGDGIEIGGSPGAPPINNIIGGTEPGARNVISG
                     QGNTGVDLGGSAAGTLIQGNFIGTDVTGTVAISNGVGVNLSANTATVGGTAPAARNVI
                     SGNGKGINISTFSGDPHNQILGNYIGVDAAGTTALANGIGIEVNGSNAVIGGTELGSG
                     NVISGNLVGVDCRLGSGTRILGNLIGTDASGNLAVGNQLGVALSSNQNRVGGPEAGAR
                     NVISGNLTGVDIGSLTTGGPSGNRIQGNLIGTNAAGTTALGNTLQGVRITQAANNIVG
                     GAGTGEGNTIAFNGWGVSVSQFAATGNRIRGNSVFSNALLGIDLNNDLAVNPNDPLDA
                     DAGANMLQNFPVLGAVTASAGTTRVVGTLRSTPGTEFTVDFYANAACDPSGNGEGARP
                     FGSAQVVTDAAGEAAFDVTLPQGLPAGRALTATATDLAGNTSEFSPCAASRASGSVEF
                     SSARYDVLEDVGQAVIRVVRTGGSRGTLTVNYSSGGGTATAGADYTPASGTLTFAEGE
                     TEKILNVPIADDGATEPEETVNLTLSGVPELESLGSRPAAVLHIFDSTTPLTIRGGDP
                     AEHGRLLITEGTGGRRNAVVPVSLSAATSRTVTVDYATVGSAGPGGATAGSDFLSVSG
                     TITFEPGSQFKQVVVPVIGDAFDEFEESFSVSFTNPSGASVNNFALVTIVDDDAEPSI
                     LVPDVAAAESAAGSKATFSVRLSAVSGKTVSVGYSTADGTASAGSDYTAASSFLTFSP
                     GETVKNVEVTVLADAAAEGDETFTLNLSNPFNATRADSQATATILDSASATPVVRFTN
                     PSYTASESAHTVSIGVTRTGDTSGESTVRYETLGQRASERTDFTRGGGTLRFAPGETA
                     KTFDVLITDDRYSEPVESLNLILSSPTGAALGGPSAVFVTITSDDASDAPSPVRESSF
                     DTQFFVRQHYHDFLNREPDAGGLAFWSNEIEKCGADAQCREVRKINVSAAFFLSIEFQ
                     ETGYLVYRMYKSAFGDATSPGVAGTVPVVRLEEFLPDTQRIGQGVVVGRPGWPELLEA
                     NKQAFALEFVSRQRFLDAYPLTMSPAEFVDRLNEQAGGVLSQEERDALVAELAANNTG
                     AGRASALRRVAEDEDLRRREFNRAFVLMQYYGYLRRNPDDAPDTNFGGWKFWLTKLDE
                     FNGNFIDAQMVKAFIDSIEYTERFGR"
BASE COUNT         1491 a         3356 c         3519 g         1530 t
ORIGIN      
        1 gctcgtctcg aactcctccg ggatcacgtc gtcggcgccg agcgcgcgca ggtcctgcaa
       61 ctccgacatg tagcgcgtcc gcacgatgat gtggatgtcg gggttcatct gccgcacgag
      121 cgaggccgtg tggcgcgtgg cgacggggtc ggagatggcg atgacgagga tgcgcgcgcg
      181 ctcgacgccg gcgtagtgca gcacctcgcg ccgcgtcgcg tcgccgtaga cgatctgctc
      241 gccgcgcgcc cccgcctcgc ggacggcctc ggcgttcagc tccaggatga cgtaaggcac
      301 gccgaccttc ctgagcacgc gcgcgaggtt gttgccgttc agcccgtagc cgacgatgac
      361 gacgtggccg cgcaggccgg cctcctcggg ccggaagtcg gccacgctgg gttcgagcac
      421 cgagccgggc gagaagaagt tctgcacggc gtagccgagg cgcggcgcgg ccttgatgag
      481 gaacggcgtg gcgatcatcg agagtatgga ggcggcgagg aacctctggt agtcggcctc
      541 ggtcaggagc ccctgcggca gcccggcgcg cgccaggatg aaggagaact cgcccacctg
      601 cgccagcccc agcgccgcca tcgtcgagac gcgcagcgag tagccgagca ggcgcaccac
      661 cgccagcacg accgccgcct tccccgccac tagggccgcg acccacgcca gcaccgtcgg
      721 caggtctgcc cacagcgcgc tcagcgagag cagcatcccg atggagacga agaagatgct
      781 gttgaagacg tcgcggaacg ggaggatgtc ggccacgatc tggtggctgt actccgactc
      841 tgagagcacc atcccggcga tgaacgcccc gagcgcgagc gacagcccga actgcgacgt
      901 cagccacgcc gtgcccaagc tcatcagcac gacgaagatg atgaagaggt ccgggctgcg
      961 cagccgcacg atctggtaga gcagcgacgg gacggccttg cgcgccgcga ggatgatgac
     1021 ggcgacggcg gccagcgccg cccccagcgt cagggcgaga cgcgacgccg acgccccctc
     1081 gcgccccccc agaacgggga ctagcagcat catgacgacg atgctcaagt cctggaagag
     1141 caggatgcct acgcccgccc gcccgtgcgg cgcgtcaacc tccgcgcggt ctatgtagct
     1201 cttcaggact atggccgtcg aggagagcgc gaacaggaag ccgaagaaga gcgcctggct
     1261 gagcgggcgc ccccagaggt aggccgcggc cgtcaccagc agcgtggtta tgacgacctg
     1321 catgccgccg cccgcgagca ccagccgcct catctcgacg atgcggcgca gcgagaactc
     1381 gagcccgatg gtgaagagca ggagcacgac gccgatctcg gccagcgcct cgatggcgtg
     1441 ggcgtccctg atgaggcgca ggccgtaggg gcctatcacg acgcccgtta tcatgaagcc
     1501 cacgatggtc ggcagccgca ggcggtggaa ggcgaacgcc atcggcacgg acgcgagcag
     1561 tatcaggagc aggtcgccca acaggggaag gtcatgcggc atgttcggaa cctcctggcg
     1621 agcacgggga gtcagtctgc cgtcggcccc ggacggcctt ctaccgccga ctattctgcc
     1681 cgcgggcgcg tcaaaagaac agagccacga aagttggggt ttcaacatga gccccgattt
     1741 catatactcg gaagcggccc tcgcccctcg cgggcctcac gagcttaagg agccagcttt
     1801 gagactcaga agacgcgccc gactgacgct tacggccgcg ggcgtcatcc tcgcatgtat
     1861 gctcgcggcc gcgcagacgg cgcggccggt cgagtgcgcg cgccgcgcgg ccgagcccgc
     1921 ggtaggcgcc ccgcggctcg ccgcgctgag cctcgcggac ttcgccgccg tcggcgacgg
     1981 cctgacggac gacggcccgg ccctgcaacg cgcgctcgac gcgctcgccg aggcgggcgg
     2041 cggcacgctc tttgtccccg ccggccgcta cgccatctcc accccggtcg tcaaggactt
     2101 cggcggcgcg gcctcctcgg tctcgattct cggcgtcgcc tcgggcacgc ccgtcgcgcc
     2161 gccgacggcc ggcgggccgg agcttacgcg cggcctcgac ctcacttccg agtttctgcc
     2221 ccgcacgggc gaggaggccg tcgcgctcag aatctccggc ctcgaaagtt ttctcatccg
     2281 tgacgtcgcc ttcgtcggca cgcccgaggt cgcgaccgac gcggccgtca ccctcgcgct
     2341 cgactcggtc gggagcgccg cggtgcgcca ctgcgagttc tacggcctga gcagcatggt
     2401 cgagggcggc gccgtcgtgc tcgcctcgcg gagcagcctc gccgtagagg agagcgtctt
     2461 cctcggctcg actggcgcga gcggcaacta cgtcgcggtc gttcagaaca tcctctggaa
     2521 gggcgtgcgc gtcgagcgca ccgtcttcgc cgactacggc tggcggcgag agtcgtatgg
     2581 caagatgagc atgggcgcgc cctactcctg ggtcaacgtc gccgaggcgg ccccgcccga
     2641 gcccgcgtcg ccgcgcaggg aggtcgtcgt ccgcgacgtg ttcttcgacg agggcggcct
     2701 cgccggcctc gccaccatcg ccctcggcgg agagcccgcg ccagcagacc tcatctacgt
     2761 cacgggcctg cacatgaacg tctctaacct cggcgcgtcc ggcaactaca tcgagagcca
     2821 gcgcggcgcg atgatagacc gctcgcgcta cggctggagc cagaacgccg actcggccat
     2881 aagtctcgtg ggagtgggcg agggcctcat ctccggcgtc gagtgcgcgg ccgccgccga
     2941 ccgcatacgc gccgacgccg cgacgggcaa actcaccgtc gtcaactcgg tttacacgca
     3001 cctcgactcg ctcgcgcaag tcactgaggt cttgagcacc gcggcgccgg aagagaaccc
     3061 cgtcgagtac gtccgcgctc agttcgagca gacggcgggc cgcgcgcccg acgcggccgc
     3121 gcacttctac tggtcgcgca tgctgttggg ctgctccgcg gacgcggagt gtctcgcggg
     3181 cgcgcgcgcc gcgctggccg cgtacttagc cgggtcgccg gcggagacct tccgcctgtc
     3241 ggggcgcgtc gtgggcgagg gcggcgcagg gctcgcgggc gtaaaggtcg agctctccgg
     3301 ctcgcagtcc gtcgcggccg tgacagacgc cgacggcggc tacagcttcg aggggcttcc
     3361 cacgagcggc gcatacgtcg tcacgccctc gctcgaaggg ttcgtcttca acccgcgctc
     3421 gcgctcggtc gaaaaccccg gcgctgacca gcgcgtcgag ttcgtaagcg cgcccgagcc
     3481 ttcgttaagt ttcgccgccg ccgcgcacac ggccaccgaa ggctcgcact cctacgccgt
     3541 ggccgtgcgg cgcgagggcg aggcatcggc cgccgccagc gtcgtcttca cggcctcgga
     3601 cggcacggcg cggcagggcc gcgacgtgag caccgtagtc ggccgcctca acttcgcgcc
     3661 gggcgagcgc gagtgtgcct tcgaggtctt catcaccgac gacgccttcg ccgagccgga
     3721 cgagcaactc acgctctcgc tcgaaggccc ggaaggagcc gagctcggcg cactctccac
     3781 cgcgacgctc accatcaagg ataacgacga cgcccccgcg ccctcgaacc ccgctgacaa
     3841 cagcgagttc ttcgtccgcc agcactaccg agacttcctc aaccgcgagc cagacgaggg
     3901 cggtctgaga ttctgggtga acgagataga gaagtgcgga gcagacgctc agtgccgcga
     3961 ggtcaggcgc ataaacgtct ctgcggcctt cttcctgtct atagagtttc aggagacggg
     4021 cttcctcgtc tatcgcctct acggcgcggc ctacgggcgc gcgccgcggc gcgtcgaaga
     4081 gtttttgctc gacgcaaggt tgataggcga cggcgtggtg gtgggggcgc ccggctgggc
     4141 gcagaagctc gaggccaaca aagaggcttt cgtcgaggcg ttcgtagcgc gccacgagtt
     4201 cgcgcgggag caccccgcgt cgctcaagcc cgccgagttc gtcgcgcggc tcaacgagag
     4261 ggcgggcggc ccgctcacga cggaagaact ggcagcggcc gagtcagagt tcggcggggc
     4321 cgcggatact tcggacgcgg ccgcgcgccg ccgcgcgctc atgctcgttg ccgagaacgc
     4381 ctcctaccgg cggcgcgagt tcaaccgcgc gttcgtcctc atgcaatact tcggatacct
     4441 tcagcgcaac cccgacgacc cgcccgacgc gggcctcgac ggcctgctct actggctcaa
     4501 gaagctcgac gacgcgggcg gcgactacca ccgcgccgag atggttcgcg ccttcctcga
     4561 ctccatcgag ttccgcacac gcttcgcgcc ttaattcaaa cgctgagggc ggcgcaggcg
     4621 ccctcagcgt caggtcttac ctgccgaagc gctcggtgta ctcgatggag tctatgaacg
     4681 ccttgaccat ctgcgcgtca atgaagttgc cgttgaactc gtcgagcttc gtgagccaga
     4741 acttccagcc gccgaagttc gtgtcgggcg cgtcgtcggg gttcctcctc aggtagccgt
     4801 agtactgcat cagcacgaac gcgcggttga actcgcgccg ccgcaggtct tcgtcctccg
     4861 ctaccctcct gagcgcggag gcgcggccgg cgcccgtgtt gttcgcggcg agctccgcga
     4921 cgagcgcatc cctctcctcc tgcgagagca cgccgcccgc ctgctcgttg agcctatcaa
     4981 cgaactcggc cggcgacatc gtgagcgggt aggcgtcgag gaagcgctgt ctcgagacga
     5041 actcgagcgc gaacgcctgc ttgttggcct ccaacaactc cggccagccg ggcctcccca
     5101 ctacgacgcc ctgccctatg cgctgcgtat cgggcaggaa ctcttcgagc ctgacgacag
     5161 gcacggtgcc tgccacgccc ggcgaggtcg cgtcgccgaa ggccgacttg tacatccgat
     5221 agacgaggta gccggtctcc tggaactcaa tcgagaggaa gaaggcggcc gacacgttta
     5281 tcttcctcac ctcgcggcac tgagcgtccg ccccgcactt ctctatctcg ttcgaccaga
     5341 aggctaggcc gcccgcgtcc ggctcgcggt tgaggaagtc gtggtagtgc tggcggacga
     5401 agaactgcgt gtcgaagctc gactcgcgca cggggctcgg cgcgtccgag gcgtcgtcgc
     5461 tcgtgatagt cacgaagacg gcgctcgggc cgccgagggc cgcgcccgtc gggctagaca
     5521 ggattagatt cagagactcg accggctccg agtacctgtc gtcggtgatg agcacgtcga
     5581 acgtcttcgc cgtctcgccc ggcgcgaagc ggagcgtccc gccgccgcgc gtgaagtccg
     5641 tacgctccga ggcgcgctga ccgagcgtct cgtagcggac ggttgactcg ccggaggtgt
     5701 cgcccgtgcg cgtcacgccg atcgagacgg tgtgcgccga ctcactcgcc gtgtaggacg
     5761 ggttagtgaa gcgcacgacg ggggttgcgg acgcggagtc gaggatggtg gccgtggcct
     5821 gcgagtccgc gcgtgtcgcg ttgaaggggt tcgaaaggtt gagcgtgaag gtctcgtccc
     5881 cttcggccgc ggcgtcggcg aggacggtca cctcgacgtt cttcacggtc tcgccggggc
     5941 tgaaggtgag gaagcttgac gcggccgtgt agtccgagcc ggccgaggcc gtgccgtcag
     6001 cggtcgagta gccgaccgag acggtcttgc cgctcacggc cgagagccgc acgctgaagg
     6061 tggccttcga gcccgcggcg ctctcggccg cagcaacgtc cgggacgagt atcgagggtt
     6121 ccgcgtcgtc gtcaacgatg gtgacgagcg cgaagttgtt gacggaagcg cccgaggggt
     6181 tcgtgaagga gaccgagaag ctctcctcga actcgtcgaa ggcgtcgcct atgacgggga
     6241 cgaccacctg cttgaactgc gagcccggct cgaaggtgat cgtgccggag acgctcagga
     6301 agtcggagcc ggcggtggcg ccgcccggcc ccgccgagcc gacagtcgcg tagtcaaccg
     6361 tgacggtgcg actcgtggcc gccgagagcg agacggggac gacggcgttg cggcgcccgc
     6421 ccgtgccttc tgttatcagc aagcggccgt gctcggccgg gtcgccgccc cgtatggtga
     6481 gcggcgtcgt gctgtcgaat atgtggagca cggccgctgg gcgcgagccc agcgactcaa
     6541 gctccggcac gcccgagagc gtgagattga cggtctcctc cggctctgtc gcgccgtcgt
     6601 ccgcgatggg gacgttcagg attttctcgg tctcgccctc ggcgaaggtg agtgtgccgc
     6661 tggcgggcgt gtagtcggcg cccgcggtgg cagtgccgcc gcccgaggag tagttgacgg
     6721 tgagcgtgcc gcggctcccg cccgtgcgca cgacgcgtat gacggcctgg cccacgtcct
     6781 cgagcacgtc gtagcgcgcc gaggagaact cgacgctccc cgaggcgcgc gacgccgcgc
     6841 acggcgagaa ctccgaggtg ttgcccgcga ggtctgtggc cgtcgccgtg agcgcgcggc
     6901 ccgccgggag tccctgcggg agcgtcacgt cgaaggcggc ctcgcccgcc gcgtcggtca
     6961 cgacctgcgc cgagccgaag ggccgggcgc cctcgccgtt gcccgaaggg tcgcaggccg
     7021 cgttcgcgta gaagtcgacg gtgaactcgg tgccgggcgt gctgcgcagc gtgccgacga
     7081 cgcgcgtcgt gccggccgac gcggtgaccg cgccgagcac cgggaagttc tggagcatgt
     7141 tggcgcccgc gtcggcgtcg agcgggtcgt tagggttgac ggcgaggtcg ttgttcaggt
     7201 caatgccgag cagcgcgttc gagaagaccg agttgccgcg tatgcggttg ccggtggcgg
     7261 cgaactggga gacggagacg ccccacccgt tgaaggcgat ggtgttcccc tcgcccgtgc
     7321 ccgcgccgcc gacgatgttg ttggcggcct gggtaatcct cacgccctgc aaggtgttgc
     7381 cgagcgccgt ggtgcccgcg gcgttcgtgc ctataaggtt gccctggata cggttgccgg
     7441 aaggcccccc cgtcgtcagg ctgccgatgt caacgccggt caggttgccg gagattacgt
     7501 ttcgcgcgcc ggcctcgggg ccgcccacgc ggttctggtt gcttgagagc gccacgccga
     7561 gctgattgcc gacggcgagg ttgccggagg cgtcggtccc tatcaggttg cccaggatgc
     7621 gcgtgccgga gcccagacgg cagtcgacgc cgaccaggtt gccggagatg acgttgcccg
     7681 agccgagctc ggtgccgccg atgacggcgt tcgagccgtt gacctcgatg ccgatgccgt
     7741 tggcaagcgc ggtcgtgccg gcggcgtcaa cgccgatgta gttgccgagt atctggttgt
     7801 gcgggtcgcc ggagaaggtg cttatgttga tgcctttgcc gttgcccgag atgacgttgc
     7861 gcgccgcggg ggcggtgccg cccaccgtcg ccgtgttagc ggagaggttt acgccgacgc
     7921 cgttcgagat ggcgacggtg ccggtaacgt cagtgccgat gaagttgcct tgaataagcg
     7981 tcccggcggc gctgcctccg agatctacgc cggtgttgcc ctggcccgag atgacgttcc
     8041 gggcgccggg ctctgtgccg ccgataatgt tgttgatggg cggggcgccg ggcgagcccc
     8101 ctatctcgat gccgtcgccg ccgttgccca gaggcgtcgt gccggcggcg ttcgtgccga
     8161 tgaagttgcc ctgcacccgg ttgccggcgc tggcgattgt gacgccgccg aacgtgttgc
     8221 cggagatgac gttccgctgc gagggcgcgg ggccgcctat gcggttgttg ttcgacgcga
     8281 tgcctatggc tacgcctgtg tggttcggcc gggcggcctc gcccgccgcg tccgtgccga
     8341 tgtagttgcc ctcgacgcgg ctaccctcgc ccgcggcgat gcgtatgccg ttcgcgccgt
     8401 tgaagcggtt gatgacgaag ccgcgcacga ggcagttcga ggcggcgacg gtcaggcccg
     8461 ccgcgccgcc tccgcccgcc tgcgcgccgg agagctcgac gacgggcgtg ccggcgaagc
     8521 cgggctgagt ggtggcgtcc agctcgaccg tgccggtgat ttcaggcagc ggcgagacgg
     8581 ggctgatggt gcgcaccccc gagcccggaa tgttgaacgt tatgcggtcg gcgccggcca
     8641 tgctgttggc gtccaggatg gcctggcgga gcgagcccgc gccgtggtcg ttcgtgctcg
     8701 tgacgacgag ggtttggcgc gcgcccgcga agtcggccgt cctgtcggcc gagaggttgg
     8761 cgatggagac ggggccgccc gcgaaggcga agccgagcga cgaagccgtc aaggtgtagc
     8821 tcccgccgcc gggcgccgtg aacgagtagc ggccctcgcc gtcggtcgtg gcgaactcga
     8881 tctgcgagcc cgcgagcgcg acgcgcgcgc cggggagcgc gagccccgtg ccggcctccg
     8941 tgacgcggcc gcttatctgg aagaacgcgg cgccggaggc cgacgccgtg aagtcgagcg
     9001 actggctggc ggagaggttg tcgaaggtct gcgagggcgg cgcgaacgcg aagccggcct
     9061 tcgtcgcgct cacggtgtag gagccgccgg ccgcgaggcc gtcgaactcg tagaggccgt
     9121 cggcgcccgt cgtagtgaag gagaccagcg agcctgagag cgtcactttg acgccggcct
     9181 gcgcgttgcc ctgcgcgtcg gccacgcggc ccgcgatgcg cagcgacggc gagagcttcg
     9241 ctatgaagcc ctcgtagttg ccgcggttcg caacctgata gacctcctgg ctagagacgg
     9301 ggaagtcgat gctgagcgtc cagcccgaga cgtaggccgc gccggaagag tcgacggcta
     9361 tgcccgtgcc gtagtcgtgc gcgccaccgt cgctgccgcc gccggccgtg ccgcccagcg
     9421 gcgtcgagta ttcgagcgca gtgccggccg cgttcagctt gagcacgaag gcgtccgcgt
     9481 caacgaggcc gaagacgttc gacgccgtgt aaaggttcga gggcgtcaac gggtctatgc
     9541 cgagcgcggc caactggccg aggagccccg cgcctgactt acgccacgtc gcgccgccgt
     9601 ccgtcgtctt gtagatggtg ccgaggctgg cgcccacggt cgctatcacg taggcgttcg
     9661 agttgttctg cgggtcaacg acgatgtcgc ccgcgaaccc gttggcgagg ctggtcgccc
     9721 agccggcgcc gccgtccacg gacttgtgga cgccaaagat gctcgtggcg taaacggtcg
     9781 agggcgtctg cgggctgacg acgacgcggt ggacgaaggt tgtcgtcaac ccgttggagg
     9841 tcttagacca gttcgcgccg ccgtccgtcg tcttgaagac gccgccttcg gaggtg
//
LOCUS       DASPKR010000395         8813 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_699996, whole genome shotgun sequence.
ACCESSION   DASPKR010000395 DASPKR010000000
VERSION     DASPKR010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8813)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8813
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_699996"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1957
                     /locus_tag="VD968_10645"
     CDS             <1..1957
                     /locus_tag="VD968_10645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14887.1"
                     /translation="NPQVDFSRVTNPPPSALTSPTGINTANDQPRLRSFYNVMLGRIG
                     NIGQGFVAASDSAFGPPGSRFPFDARYPEYDFYAQDTWKLRSNLTVDFGLRYEVKISP
                     RSEGSLPILRPDRPVRIGEAPANNLSWQEGELFDSDFNNFAPTVGFAWDPFGDGKTSV
                     RGNFRLAYDRTNTFVFSSFIYNTAPGATAGVINSSYGVQANEQGRLRFGLPTLTPPAG
                     LTPASLRQPPPFSNNSITVVDPSLRSPKTYQWGASLQREVGWSSVVEVNYIGRKGVGL
                     YGGYDVNQANIFARDPRFGQNFLEAFNALRASSTATSPLINALLTGDPNNNAGTTQFR
                     SLFSSELNLGSVAAAADSLARRLTPGSTTVPVIVTNGFSPFFFRPYPQFSGGLNVIDS
                     NDFSFYNGLELQLSRRFSQGLSYQASYTLAKSMDTRSFDPAFTVAGRGTTQLASNTPY
                     NIYDRRLNYARSDFDRRHSLQGYVVYDIPLGRGRRFLRDVGPFVDRLIGGFEMAGSFI
                     WQSGRPFTVYSGTNTISNVLQTPANCNGCSPDLGSLAQESGTNFFFTQSQRALFSAPA
                     PGEMGNTGRNFFTGPKLFNLDLMIGKKFYLTETSNFEFRAEMQNATNTPAFDFPTAVI
                     TNSTFGRIRGSVVNTARRIQLAAKFNF"
     gene            2034..3635
                     /locus_tag="VD968_10650"
     CDS             2034..3635
                     /locus_tag="VD968_10650"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047420 - N-acyl-D-amino-acid deacylase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacylase"
                     /protein_id="HYE14888.1"
                     /translation="MKARAALIAALIFALSPAPAGEARQSAPAYDLVIRNARVVDGTG
                     NPWFRADVAVKGGRVARVGSVAPGEGARVIDAAGRVLAPGFIDVHAHVENIYNHPASE
                     NFVRMGVTTLVTGNCGGSAVDVGGFLGRIRETPLAVNISTLVGHNSVRREVFGEANRA
                     PTTEELAKMKSLVEQAMRDGAVGLSTGLIYVPGTYAKTDEVLELARVAAAHGGIYATH
                     MRSEGLKVADAIRESIEIGEKAGMPVEISHFKVSARKLWGGSEKALAMVREARARGLS
                     VTVDQYAYTASSTSLDSRMPDWVLEGGREEGKKRLADPAQRSRAAREMKEGLKQSGFK
                     DFSYAVVASYRAKPEYNGKSIAEITKLARGKSDVGSQIEQIIEMYEAGGAAMVYHSMS
                     EEDVRRIMREPFTMIASDSGVRQLGEGVPHPRGYGNNARVLSVYSRELGLVTLEDAVR
                     KMTSLPAQTFSLRDRGLVREGMAADLVLFDDGKVSAPSTYESPHQYAVGFDYVIVNGA
                     VVFEGGRMTGERPGAALRRGGAALL"
     gene            3687..7211
                     /locus_tag="VD968_10655"
     CDS             3687..7211
                     /locus_tag="VD968_10655"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE14889.1"
                     /translation="MKRHLREGLGVVLLAVAVSLCLGAPTLAQVTETAAEVNGQVTDS
                     AGAALPNATIVIKNDATGEERRVQANEEGIYRITPLNPGTYTLTVEQQGFKKYVETGV
                     TLNAKDRRLLNVVLEAGAVSEVVTVTSEQNVVQDSPTSQTLISGTQVMEIPLQNRDFT
                     KLLELTPGVSSSLDDETGFGLANRFDVSINGMRRNSVNVFVDGVSNTDVGSNITLLST
                     PTVDSIKEFKVLTSNYTAEVGRSGGGTVTLVTRGGENQFHGSLYDFARNDRFNANTFF
                     NNRRGRNATTGLPNAPTPRLRYHNFGGTFSGPVMLPNFGVGDKSYWSGRDKTFFFFSE
                     EQRRITRGITAATATVPSLAERSGNFSAFLGLPIFRASNGTSCTSATVLPAGVTCTTT
                     PLNVTDTAGNVIQARAGMVFRAADGRAYAGNIVPTSDLSPIALSIMNAYPLPNTGTNQ
                     FVHSPINALRTQQESIRIDHNFNDDHRLFGRYTHDLNRTQEPSGLFTTNNVPNFGTTN
                     TRIPGMTFVASLTSVISPTLVNEATYNFSSNLIGSAVVGRSRQSDFPGVENIPEVFEE
                     NNAGVIPQVNFTSAHSNLNTLQGFNIAYKNQVVRDTVTWTRGNHTFKFGGEASWELKD
                     ENANNITQGLFNFSGVRSRGTSSGISLSQTGLAFADFLTGRAESYTEDEFDVTVNLRF
                     GRREFFVQDTWKFRPNLTFDFGVRYQYFVPVTDVNNVLTSFDPALYSRANAPACVTAS
                     CASFVRGTGDPLNGIARAGVNSRFGRSIYPSDKNNFSPRVGLAWDPFKQGRTVIRMGY
                     GFYYDQPLVGIFEQNAFVNPPFNNRFAFSGANVTFTNPTGGALGALPARDLIASAPDF
                     ETPTIQQWSLGVQHEVVRNVVADLSYVGTKGDNLIRPLDINQPQPADVARVGIANVNT
                     VRPFLGYRRITWRETSGKSRYHGMLSTISYRHGRGLSLTASYTFSKNLTDATNDRDAV
                     DFPQNPLNYRAEYAVARTDRPHIFSASYVYELPFFTRDSNTWKRTILGGWQIAGITDI
                     TSGQPVARVGIAAAQPAGGLATGFYPTMIANPNGGRAGQIDPATGLPFIFDPAAFAVP
                     AAGSYGNTPRAFARLFGRNQTNMTLTKNIYFDEDQGVRLQLRAEAFNIFNHTQFTGVQ
                     TNLADSAFGRPTGTRLPREFQFGAKISF"
     gene            7305..8492
                     /gene="nagA"
                     /locus_tag="VD968_10660"
     CDS             7305..8492
                     /gene="nagA"
                     /locus_tag="VD968_10660"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008448 - N-acetylglucosamine-6-phosphate
                     deacetylase activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HYE14890.1"
                     /translation="MSKPESLLLRGSRVVLPDREAEGLAVLVEGGRLSRVAREAEVGG
                     AGATRELDLSGLTLYPGFVDVHIHGAVGVDANDAAPEDLHRVARFLARNGVTTWLPTL
                     VPDTEEAYGRAARAIGELMNAEGDLAPAASAAGVHYEGPFVNLKQCGALRTRFFRTYS
                     GPRDLDALAVPPAAGAVLMMTLAPEMDGGIALVRELARRGWVVSVGHTRAGVETLSHA
                     LAAGARHMTHFPNAMSPLHHRDPGPVGWGLVTDEVTLDLIADGVHSDPLMLRLAIRCK
                     TPARVSLISDSVAPAGLGDGEHRVWGETIRVEGGRTMNERGSIAGSVITMLDAVRTVT
                     GLGHPLHEVARMASLNPARLVSLGRDRGSIEEGKRADLVALDAQGRARLTLVAGRVAH
                     DAL"
     gene            complement(8583..>8813)
                     /locus_tag="VD968_10665"
     CDS             complement(8583..>8813)
                     /locus_tag="VD968_10665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14891.1"
                     /translation="EARFTLGRALAQVGELERAAGELREAVRLDDSIADGHFQLGRLL
                     LRMGRKDEGERELERAKQLHNEKRASEGVNKP"
BASE COUNT         1521 a         3258 c         2704 g         1330 t
ORIGIN      
        1 caacccccag gtggacttca gccgcgtcac caacccgccg ccgtcggcgc tcacgtcgcc
       61 cacgggcatc aacacggcca acgaccagcc ccgcctgcgc agcttctaca acgtcatgct
      121 cgggcgcatc ggcaacatcg ggcagggctt cgtcgccgcc agcgacagcg ccttcggccc
      181 gccgggctcg cgcttcccct tcgacgcccg gtacccagag tacgacttct acgcccaaga
      241 cacctggaag ctccgctcca acctgaccgt ggacttcggc ctccgctacg aggtgaagat
      301 atcgccccgc tctgaggggt cactacccat cctgcggccc gaccgccccg tccgcatcgg
      361 cgaggcgccg gccaacaacc tgagctggca ggagggtgag ctcttcgaca gcgacttcaa
      421 caacttcgcg cccacggtcg gcttcgcctg ggacccgttc ggcgacggca agacctccgt
      481 gcgcggcaac ttccgcctcg cctacgaccg cacgaacact ttcgtcttct cctctttcat
      541 ctacaacacc gcgccgggcg cgacggccgg cgtcatcaac tcgagctacg gggtgcaggc
      601 taacgagcag ggccggctgc gcttcgggct gccgacgctg accccgccgg ccggcctgac
      661 gccggcgtcg ctgcgccagc cgccgccttt ctcgaacaac agcatcacgg tcgttgaccc
      721 ctcgctgcgc tcgcccaaga cctaccagtg gggcgcgagc ctccagcgcg aggtcggctg
      781 gtcttctgtc gtcgaggtga actacatcgg gcgcaagggc gtcggcctct acggcggcta
      841 cgacgtgaac caagccaaca tcttcgcgcg cgacccgcgc ttcggccaga acttcctcga
      901 agccttcaac gcgctgcgcg ccagctccac cgcgaccagc ccgctcatca acgcgctgct
      961 taccggcgac cccaacaaca acgccggcac gacgcagttc cgctcgctct tctcgtccga
     1021 gctcaacctc gggtcggtgg cggcggccgc agactcgctg gcgcgccgcc tgacccccgg
     1081 ctcgaccacc gtccccgtta tcgtcaccaa cggcttcagc cccttcttct tccgacccta
     1141 cccgcagttc tcgggcgggc tcaacgtcat cgacagcaac gacttctcct tttacaacgg
     1201 gctggagttg cagctgagcc gccgcttcag ccaagggttg agctatcagg cgtcctacac
     1261 gctcgcgaag tccatggaca cgcgctcgtt cgatccggcc ttcaccgtcg ccgggcgcgg
     1321 caccacgcag ctggcctcga acacgcccta caacatctac gaccggcggc tcaactacgc
     1381 ccgctcggac ttcgaccgcc gccactcgct ccaaggctac gtcgtctatg acatcccgct
     1441 cggcaggggg cgccgcttcc tcagagacgt cggcccgttc gtggacaggc tcatcggcgg
     1501 cttcgagatg gcgggcagct tcatatggca gtcgggccgc cccttcaccg tctattccgg
     1561 caccaacacc atcagcaacg tcctacagac gccggcgaac tgcaacggct gctcgcccga
     1621 cctcggctcg ctcgcgcagg agtcggggac gaacttcttc ttcacgcagt cgcagcgcgc
     1681 gctcttctct gcgcccgcgc cgggcgagat gggcaacacg ggccgcaact tcttcacggg
     1741 gccgaagctc ttcaacctcg acctgatgat cggcaagaag ttctacctga ccgagacgag
     1801 caacttcgag ttccgcgccg agatgcagaa cgccacgaac acgcccgcct tcgacttccc
     1861 gacggcggtc atcaccaata gcaccttcgg gcgcatacgc gggagcgtgg tcaacacggc
     1921 gcggcgcatc cagctggccg ccaagttcaa cttctagcga gggcgcggcg gcggccgggc
     1981 tggttaggcc ggccgccgcc ggcgccccta cgccgggttc ttgtgtgcaa actgtgaagg
     2041 ctcgcgcggc actcatcgcg gctcttatct ttgccctgtc gccggcgccc gccggcgagg
     2101 cacggcagtc cgcgcccgcc tacgacctcg tcataaggaa cgcgcgtgtc gttgacggca
     2161 ccggcaaccc ctggttccgc gccgacgtgg ccgtcaaggg cgggcgcgtg gcgcgcgtcg
     2221 gttcggtcgc gcccggagag ggcgcgcgcg tgattgacgc ggcggggcgc gtgctggcgc
     2281 ccggcttcat tgacgtccac gcgcacgtcg agaacatcta caaccacccc gcctcggaga
     2341 acttcgtccg catgggggtg acgacgctcg tgacgggcaa ctgcggcggc tcggccgtgg
     2401 acgtgggcgg cttcctcggc cggataaggg agacgccgct cgccgtcaac atctccacgc
     2461 tcgtcggcca caattccgtg cgccgcgagg tcttcggcga ggctaaccgc gcgcccacga
     2521 ccgaagagtt ggcgaagatg aagtcgctcg tcgagcaggc gatgcgcgac ggggcggtcg
     2581 gcctctccac cggcctcata tacgtccccg gcacctacgc gaagaccgac gaggtgttgg
     2641 agctcgcgcg cgtggcggcc gcgcacggcg gcatctacgc cacgcacatg cgcagcgagg
     2701 gcctgaaagt cgccgacgcc attcgcgaga gcatcgagat aggcgagaag gcgggcatgc
     2761 ccgtcgaaat ctcccacttc aaggtgagcg cgcggaagct ctggggcggg agcgagaagg
     2821 cactcgcgat ggtgcgcgag gctcgcgcgc gcggcctctc cgtcaccgtg gatcagtacg
     2881 cctacacggc cagctccacc tcgctcgact cgcgcatgcc cgactgggtg ctcgagggcg
     2941 ggcgcgagga agggaagaag cgcttggccg acccggcgca gcgctcgcgc gccgcccgag
     3001 agatgaagga ggggctgaag cagtcgggct tcaaggactt ctcatacgcc gtggtcgcga
     3061 gctaccgggc gaagccggag tacaacggca agtccatagc cgagataacg aagctcgcgc
     3121 gcgggaagtc tgacgtgggc agccagatcg agcagataat cgagatgtac gaggccggcg
     3181 gggcggcgat ggtctatcac tcgatgagcg aggaggacgt tcgccgcatc atgcgcgagc
     3241 ccttcacgat gatcgcctca gacagcggcg tgcggcagct cggcgagggc gtgccgcacc
     3301 cgcgcggcta cggcaacaac gcgcgagtcc tctcggtcta ttcccgcgag ctgggcctcg
     3361 tcacgctcga ggacgccgtg cggaagatga cctcgctgcc ggcgcagacc ttctccctgc
     3421 gcgaccgcgg gctcgtgcgc gaggggatgg ccgcagacct cgtcctcttc gacgacggaa
     3481 aggtctcggc gccctcgacc tacgagagcc cgcaccagta cgccgtcggc ttcgactacg
     3541 tgatagtcaa cggcgccgtg gtcttcgagg gcgggcgcat gactggcgag cggccggggg
     3601 cggcgctgcg gcgcgggggc gccgctctgc tttgattacc tgatgctgat aaaccgaagg
     3661 tcaaaacctt aagaggaact aagaagatga aaagacactt gagagagggg ctgggcgtcg
     3721 tgctgctggc cgtcgccgtc agcctatgcc tcggcgcccc gacgctcgcg caggtcactg
     3781 agaccgccgc cgaggtcaac ggccaggtca cggactcggc gggcgccgcg ctgccgaacg
     3841 cgaccatcgt catcaagaac gacgccacgg gcgaggagcg ccgcgtgcag gcgaacgagg
     3901 agggcatcta ccgcatcacg cccctcaacc ccggcaccta cactcttacg gtcgagcagc
     3961 agggcttcaa gaagtacgtc gagacgggcg taacccttaa cgccaaggac aggcggctct
     4021 tgaacgtcgt gctcgaggcc ggggccgtga gcgaggtcgt cacggtgacg agcgagcaga
     4081 acgtcgtgca ggacagccct acgagccaga cgctcatctc cggcacgcag gtcatggaga
     4141 taccgctcca gaaccgcgac ttcacgaagc tcctggagct gacgccgggc gtgagctcga
     4201 gcctcgacga cgagaccgga ttcggcctcg ccaaccgctt cgacgtctcc atcaacggca
     4261 tgcgccgcaa ctccgttaac gtcttcgttg acggcgtgtc gaacaccgac gtgggctcca
     4321 acatcactct gctctcgacg cccacggttg actccatcaa ggagttcaag gtgctgacct
     4381 ccaactacac ggccgaggtc gggcgctcgg gcggcgggac agtcacgctc gtgacgcgcg
     4441 gcggcgagaa ccagttccac ggctccctct acgacttcgc gcgcaacgac cgcttcaacg
     4501 ccaacacctt cttcaacaac cggcgcggcc gcaacgcgac gaccggcctc ccgaacgcgc
     4561 cgacgccgcg cctgcgctac cacaacttcg gcggcacctt cagcggcccc gtcatgctcc
     4621 ccaacttcgg cgtgggcgac aagtcttact ggagcgggcg cgacaagacc ttcttcttct
     4681 tctccgagga gcagcgccgc atcacgcgcg gcatcaccgc cgcgacggcc accgtgccga
     4741 gcctcgccga gcggagcggc aacttctcgg ccttcctcgg cctgcccatc ttccgcgcct
     4801 cgaacgggac gagctgcacg agcgccacgg tgctccccgc gggcgtcacc tgcacgacga
     4861 ccccgctcaa cgtcaccgac acggccggca acgtcataca ggcgcgcgcc ggcatggtct
     4921 tccgcgccgc ggacggccgc gcctacgccg gcaacatcgt gccgacgagc gacctgagcc
     4981 ccatcgcgct ctcgataatg aacgcctacc cgctccccaa cacggggacg aatcagttcg
     5041 tccactcgcc catcaacgcg ctcaggaccc agcaggagtc catccgcatt gatcacaact
     5101 tcaacgacga ccaccgcctc ttcgggcgct acacgcacga cctgaaccgg acgcaggagc
     5161 cgtccggcct cttcaccacc aacaacgtcc cgaacttcgg caccaccaac acgcgcatac
     5221 ccggcatgac gttcgtcgcg tcgctcacga gcgtcatctc cccgacgctc gtcaacgagg
     5281 cgacctacaa cttctcgtcg aacctcatcg gctcggccgt cgtgggccgc agccgccagt
     5341 ccgacttccc aggcgtcgag aacatccccg aggtcttcga ggagaacaac gccggggtca
     5401 tcccgcaggt aaacttcacc agcgcccact cgaacctgaa cacgctccaa gggttcaaca
     5461 tcgcctacaa gaaccaggtc gtgcgcgaca cggtgacgtg gacgcgcggc aaccacacct
     5521 tcaagttcgg cggcgaggcc tcctgggagc tgaaggacga gaacgccaac aacatcacgc
     5581 agggcctctt caacttctcc ggcgtgcgct cgcgcggcac ctcgtcgggc atcagcctgt
     5641 cgcagacggg cctcgccttc gcggacttcc tgacgggccg cgccgagagc tacacggagg
     5701 acgagttcga cgtgaccgtc aacctccgct tcggccgccg cgagttcttc gtgcaggaca
     5761 cctggaagtt caggcccaac ctgaccttcg acttcggcgt gcgctaccag tacttcgtcc
     5821 ccgtcacgga cgttaataac gtgctcacgt cgttcgaccc ggcgctttac agccgcgcca
     5881 acgccccggc ctgcgtgacg gcctcctgcg ccagcttcgt gcgcggcacc ggcgacccgc
     5941 tcaacggcat agcgcgcgcc ggcgtcaact cccgcttcgg ccgctccatc tacccgtcgg
     6001 acaagaacaa cttcagcccg cgcgtcggtc ttgcctggga cccgttcaag cagggcagga
     6061 cggtcatcag gatgggctac ggcttctact acgaccagcc gctcgtcggc atattcgagc
     6121 agaacgcctt cgtcaacccg cccttcaaca accgcttcgc cttcagcggc gctaacgtca
     6181 cgttcaccaa cccgaccggc ggcgctttgg gcgcgctccc ggcgcgcgac ctcatcgcca
     6241 gcgcccccga cttcgagacc ccgaccatcc agcagtggtc gctcggcgtc cagcatgaag
     6301 tcgttcgcaa cgtcgtcgcc gacctctcct acgtcggcac gaagggcgac aacctcatcc
     6361 ggccgctcga catcaaccag ccgcagccgg ccgacgtggc gcgcgtcggg atagccaacg
     6421 tcaataccgt ccgcccgttc ctcggctacc gccgcatcac ctggcgcgag acgagcggca
     6481 agtcgcgcta ccacggaatg ctctcgacca tcagctaccg ccacggcagg gggctgagcc
     6541 ttacggcgag ctataccttc agcaagaatc tgacggacgc cacgaacgac cgcgatgccg
     6601 tcgacttccc gcagaacccg ctcaactacc gcgccgagta cgccgtggcg cgcaccgacc
     6661 gcccgcacat cttctcggcc agctacgtct atgagcttcc gttcttcacg agggactcga
     6721 acacgtggaa acgcacgatt ctgggcgggt ggcagatagc cggcatcacc gacatcacgt
     6781 cggggcagcc cgtcgcccgc gtcggcatcg cggcggcgca gccggcaggc ggcctcgcca
     6841 cgggcttcta ccccacgatg atcgccaacc cgaacggcgg gcgcgccggg cagattgacc
     6901 ccgcgacggg cctgcccttc atattcgacc cggcggcgtt cgccgtcccg gcggccggct
     6961 cctacggcaa tacgccgcgc gccttcgcac gcctgttcgg tcgcaaccag accaacatga
     7021 ccctgactaa gaacatctac ttcgacgagg atcagggagt ccgccttcag ctacgcgctg
     7081 aggccttcaa catcttcaac catacgcagt tcaccggcgt ccagaccaac ctggccgact
     7141 ccgccttcgg ccgcccgacg ggaacgcgcc tcccgcgcga gttccagttc ggcgcgaaga
     7201 taagcttcta gccgggcgcc gagacgaccc acacgcgccc gcggggcttc caagtgaaac
     7261 cccgcgggcg cgcgcctttt tcggggcggc gtgaggattt gacgatgagc aaacccgaaa
     7321 gtttactgct gcgcggctcc cgcgtggttc tgcccgaccg ggaggccgag gggctcgcgg
     7381 ttctcgtgga gggcgggagg ctctcgcgag tcgcgcgcga ggcggaagtg ggcggcgcgg
     7441 gcgcaactcg cgagctagac ctctcgggcc tcacgctcta ccccggcttc gttgacgttc
     7501 acatacacgg cgccgtcggc gttgacgcga acgacgccgc gcccgaagac ctgcaccgcg
     7561 tcgcgcgatt ccttgcgcga aacggcgtca cgacctggct cccgacgctc gtccccgaca
     7621 cggaagaggc ttacgggcgg gccgcccgcg caatcggcga gctgatgaat gccgagggcg
     7681 acctcgcgcc ggccgcttcc gccgcgggcg tccattacga aggccccttc gtcaacctta
     7741 aacagtgcgg cgcgctgcgc acgcgcttct tccgaactta ctcggggccg cgcgacttag
     7801 acgctttggc cgtccctccg gccgcgggcg ccgtactgat gatgacgcta gcgcccgaga
     7861 tggacggcgg catcgcgctc gtcagagagc tcgcgcgccg cggctgggtc gtctccgtcg
     7921 gccacacgcg cgcgggcgta gagacgctct cgcacgcgct cgcggccggc gcgcgccaca
     7981 tgacacactt cccgaacgcg atgtcgccgc tgcaccaccg cgaccccggc cccgtgggct
     8041 ggggcctcgt cacggacgaa gtcacgctcg acctcatagc cgacggcgtc cacagcgacc
     8101 cactcatgct ccgcctcgcc atacgctgca agacgcccgc gcgcgtctct ctgataagcg
     8161 actcggtcgc gcccgccggg ctcggcgacg gcgagcaccg cgtctggggc gagactataa
     8221 gggtcgaggg cggccgcacc atgaacgagc gcgggagcat cgccggctcc gtcatcacga
     8281 tgctcgacgc cgtccgcacc gtcacagggc tgggccaccc gctgcacgaa gtcgcgcgca
     8341 tggcctcgct caaccccgcg cgcctcgtca gcctcggccg ggaccgcggc tcaatcgagg
     8401 aggggaagcg cgcagacctc gtcgccctcg acgcgcaggg gcgtgcacgc ctcaccctcg
     8461 tcgcgggccg cgtcgcccac gacgcgctct aaagtgactg cggaattgaa aggcggagag
     8521 ggttgatgac agcgctgccg tcatcaaccc tctccgcctt tcaattcccc gatcagcaat
     8581 cgtcagggct tgttgacgcc ctcggaggcg cgcttctcgt tgtgaagctg cttggcgcgc
     8641 tcaagctcgc gctcgccctc atccttccgg cccatgcgca ggagcagccg cccgagctgg
     8701 aaatggccgt cggcgatgct gtcgtctagc ctgacggcct cgcgaagctc gccggccgcg
     8761 cgctcgagct cgcccacttg cgcgagcgcg cgccccagcg tgaagcgcgc ctc
//
LOCUS       DASPKR010000396         7116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1735258, whole genome shotgun sequence.
ACCESSION   DASPKR010000396 DASPKR010000000
VERSION     DASPKR010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7116)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7116
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1735258"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..610
                     /locus_tag="VD968_10670"
     CDS             <1..610
                     /locus_tag="VD968_10670"
                     /inference="COORDINATES: protein motif:HMM:NF037565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail sheath C-terminal domain-containing
                     protein"
                     /protein_id="HYE14892.1"
                     /translation="VGSRPGVRSQWERVPPDGAACGVLAERALTRGAWVAPANELLRG
                     VVALSPGIAPERRLDLQEARVNLARQEPRGFVVLCADTLSADEDLRPINVRRLLILLR
                     RLALRLGSRYVFEPNDGTFRRGVQRGFEAMLGHMHARGAFAGRTAATSFQVVTDETLN
                     TPQSVEQGRFIVELKVAPSLPLRFLTVRLVQTGDRSQVTEAI"
     gene            614..1267
                     /locus_tag="VD968_10675"
     CDS             614..1267
                     /locus_tag="VD968_10675"
                     /inference="COORDINATES: protein motif:HMM:TIGR02241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HYE14893.1"
                     /translation="MANSANERVASPFTNFNFSVEISVPGVSQALCSAAFAECDGLEM
                     SIEVKTIREGGNNGAQIRLAGPVTYGQLTLKRGMTSSFELWDWFEKTMSDARLRADAE
                     VVLLSEDKKERARFILSRCVPVKVRAPSLNAKDGAVAIEELQLAYESMKVKRPGGAGG
                     GIGISAGVSVGVGASFSASASISAGASFEAGASVEAGASFNADASLGADSSANFSIG"
     gene            1279..2091
                     /locus_tag="VD968_10680"
     CDS             1279..2091
                     /locus_tag="VD968_10680"
                     /inference="COORDINATES: protein motif:HMM:NF039279.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14894.1"
                     /translation="MTANIARAKLVELTPKGVEMTDTAVEVQFNPETLSVVYSNSVVT
                     PAGNNSPKTDAGGGGGAVGDQRGSAAMQHTGQGTTRFSVQLWFDVTGVLPQAKQGVTD
                     VRDLTKDVVYFIKSKTDRDPPVPPMMSFQWGSFRFDGIVQSVDETLEFFSANGTPLRA
                     KVGLSMQQSDVVMPAGGGKGLGPPGAPGGGAASPGTKPLFQAQAGLSLQASASASFGA
                     SADWQAIATANNIENPRFLEPGQLIDMNAKASASASASASLTGSASASFELG"
     gene            2102..2275
                     /locus_tag="VD968_10685"
     CDS             2102..2275
                     /locus_tag="VD968_10685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14895.1"
                     /translation="MGVVIQDMDVISRKADDDAAPQPAPDAGEAQPHGMTARDIERVV
                     EHREERYERVRAH"
     gene            2284..3354
                     /locus_tag="VD968_10690"
     CDS             2284..3354
                     /locus_tag="VD968_10690"
                     /inference="COORDINATES: protein motif:HMM:NF017739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="contractile injection system protein, VgrG/Pvc8
                     family"
                     /protein_id="HYE14896.1"
                     /translation="MPFDVEAVYRSTRPAVEIDGQPAESLTAGLNSLTIVETTDGLYR
                     CEALFGNWGERDGSVGFLYFDRATLDFGKPFKIKLGDSTLFDGRVMGLEGQFGAGSAP
                     QINVLAEDRLQDLRMTRRTRTFADVTDADIFNQIAGEHGLTPSVDLSGPTYKVLAQVN
                     QSDLAFLRERARSVDAELWVEGSTLNAKKRADRDAGTIKMIHGGKLFDFTVAADLAMQ
                     RTSVSVSGWDVASKDEIKFEADDSALGGELGSDESGASILQSALGDRKESLTHTVPLS
                     SDEAQAAAEAFFRMSARRFLVGRGTAETSADLRVGCFLDLQGLGDLFSGKYHVTEVRH
                     MFDLSNGLRTEFRAERPGIGTP"
     gene            3376..4092
                     /locus_tag="VD968_10695"
     CDS             3376..4092
                     /locus_tag="VD968_10695"
                     /inference="COORDINATES: protein motif:HMM:NF016595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HYE14897.1"
                     /translation="MRGTLSLEGVIEARQTAGLGGRWYGVFPALVSDIVDPEGQGRVK
                     VTLPWAPDTAGAKYDTWARLATFMGGNNRGSWFIPDVNDEVLVVFEAGDPRRPYVIGG
                     LWNGTDAPPDSMDGAGNNFRKVLRSRNGVKVTLDDTDGQEKMILETPGGQKITMKDGP
                     GAVEIVDSNGNSIKLETSGITVTASAKVTVNATLVQVSASMVTVDAGMSKFSGVVQCD
                     TLISNCVVSASYTPGAGNIW"
     gene            4104..6224
                     /locus_tag="VD968_10700"
     CDS             4104..6224
                     /locus_tag="VD968_10700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14898.1"
                     /translation="MEDIVQWTNPSPMWPASGGDTAGAGDIAETRRAMRRPAILRFAT
                     DTFMEDLSALMENEPWRLGEFVAKPETWRGPLTTPAPAERVPRFLLKNERFAKLVGAR
                     AGANFRAAGLALKTGASGGGNGGGPEVEDGEEKPTLKLYQPAHQRYYMIAGCLVCRRP
                     GLPDKALQTNREERVTFVIRRLMPSAPGSAPQANAAVKGFDEHAFVNKSWQKLTGTAR
                     QLAEGEDQPALSPLSFTDGAGRKRRMLVGLIPVAKREAYMGAPPAPAGGAGAASPGVL
                     AKTERKMLFRSQVGEPWKRIIETAFTTSKSLDLSGLDDDDKPDDAQRSRQRKEAREQA
                     QISSWYVLLDFAKFLKQFVPKVWDAIDGRQPASSLTEIAEQNLYEALGNVQVTAALKA
                     ALLLNQPFFLPQPAYASDDVPASMRDALKLALAQEKLLDEVSTPYDRENSAKAAAWPP
                     FIFPLADPDPALFQSAPSLANGIPPLGEADFVKPDEVIAEANDAAKQELLDGVDDMTA
                     LVVRAMPKESSAPAPPPPLASQPLLDPSMREGLFVVRCVYERPLCEPFEPPEVSDPSE
                     PFQMAGFFDPDAPARPIRIALPIDTSPAGLRKFDKNTAFMISDVLCGQIQRMKSLTFG
                     DLVLSVLPWPFHKDLSAAAPDSGACKSGGNLEIGMICSLSLPIITICALLLLIIIVFL
                     LDIVFKWIPYFFICFPIPGFKGKK"
     gene            6238..6630
                     /locus_tag="VD968_10705"
     CDS             6238..6630
                     /locus_tag="VD968_10705"
                     /inference="COORDINATES: protein motif:HMM:NF016829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HYE14899.1"
                     /translation="MSAGRIFGRGIAFPPRVGSDGRVAWSEGEANVREAIRIILMTER
                     RERIRLPDFGGGVGLYLFEPNTVATRARIKDWMTRALKEWEPRIVVESIAVEEDPEDR
                     QAAVATITYKLVATQALQAIRVSVTLNG"
     gene            6646..>7116
                     /locus_tag="VD968_10710"
     CDS             6646..>7116
                     /locus_tag="VD968_10710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14900.1"
                     /translation="MPLLIPKIDDRRYQELLDEALARIPVHNPEWTNFNKSDPGVTLL
                     EVFAFMAESILYRANQIPERNRLKFLSLLGVPLQTASSARGLVVFTNERGPLSTITLN
                     RDVEVRAGQVPFRTTHGLDVLPVEGQVYYKRPVENPSTKVREYYEQLYASFKDPD"
BASE COUNT         1256 a         2380 c         2394 g         1086 t
ORIGIN      
        1 cgtcggctcg cgcccaggcg tgcgctcgca gtgggagcgc gtgccgcctg acggcgccgc
       61 ctgcggcgtg ctcgccgagc gcgccttgac gcgcggggcc tgggtcgcgc ccgccaacga
      121 actgctgcgc ggcgttgtag cgctctcgcc gggaattgcg ccggagcggc ggctcgactt
      181 gcaggaggcg cgcgtgaacc tcgctcggca ggagccacgc ggcttcgtcg tcctttgcgc
      241 agacactcta agcgcggacg aagacctccg gccgataaac gtccgaaggc tgctgatact
      301 ccttcggagg ctcgcgctcc gtctcggctc gcgctacgtc ttcgagccca acgacgggac
      361 gttccggcgc ggcgtgcagc gaggcttcga ggcgatgctc ggccacatgc acgcgcgcgg
      421 ggccttcgcg ggccgcacgg ccgcgacctc cttccaggtc gtgacggacg agactctcaa
      481 cacgccgcag agcgtcgagc agggccgctt catcgtcgag ctgaaggtgg cgccgtcgct
      541 cccgctcagg ttcctgaccg tccgcctcgt gcagacggga gaccgctcgc aggtcacgga
      601 ggcgatttag cagatggcaa actcggccaa cgagagggtc gcgagcccgt tcaccaactt
      661 caacttctcg gtggagattt ccgtccccgg cgtctcgcag gcactgtgca gcgctgcctt
      721 cgccgagtgc gacgggctcg agatgagcat agaggtcaag accattcgcg agggcgggaa
      781 caacggcgcg cagatacgac tggccggccc cgtcacctac gggcagttga cgctgaagcg
      841 cggcatgact tcgagcttcg agctctggga ctggttcgag aagacgatga gcgacgcgcg
      901 gctacgcgcc gacgcagagg tcgtcctgct ctccgaggac aagaaggagc gcgcgcgctt
      961 catcctctcg cgctgcgtcc ccgtcaaggt cagggctcct tcgctgaacg cgaaggacgg
     1021 cgccgtcgcc atcgaggagc ttcagctcgc ctacgaatct atgaaggtca agcggccggg
     1081 cggcgcgggc ggcgggatag gaatctccgc gggcgtctcc gtcggcgtcg gcgcgtcctt
     1141 tagcgcgagc gcttcgataa gcgccggcgc gtccttcgag gccggcgctt ctgttgaggc
     1201 gggcgcatcc ttcaacgcgg acgcttcgct gggggccgac tcttcggcga acttctcgat
     1261 agggtaggag gggatttcgt gacggctaac atcgcgaggg cgaagctggt agagctcact
     1321 ccgaagggcg tcgagatgac ggacaccgcc gtcgaggtgc agttcaaccc cgagacgctc
     1381 agcgtggttt acagcaacag cgtcgtcacc ccggccggca acaacagccc gaagacggac
     1441 gcgggcggcg ggggcggcgc cgtgggcgac cagcgcggca gcgcggcgat gcagcacacg
     1501 gggcagggga ctactcgctt cagcgtgcag ctatggttcg acgtgacggg cgtgctgccg
     1561 caggccaagc agggggtgac ggacgtgcgc gacctgacga aggatgtcgt ctatttcatc
     1621 aagtcgaaga cggacagaga cccgcccgtc ccgccgatga tgagcttcca gtggggctcg
     1681 ttccgcttcg acggcatcgt ccagtccgtt gacgagacgc tcgaattttt ctcggccaac
     1741 ggcacgcctc tgcgcgcgaa ggtgggcctg agcatgcagc agagcgacgt ggtgatgccc
     1801 gcgggcgggg gcaagggcct cggccccccc ggcgcgcccg gaggcggcgc ggcctctcct
     1861 gggacgaagc cgctcttcca ggcgcaggcc ggcctctcgc tccaggcgtc ggcctctgcg
     1921 agcttcggcg caagcgccga ctggcaggca atcgccaccg ccaacaacat cgagaaccct
     1981 cgcttcctag agcccgggca gttgatagac atgaacgcga aggcgtcggc gtccgcctcg
     2041 gcctcggcgt cgctcacggg ttcggcgtcg gcctctttcg agcttggata gggggaagcg
     2101 tatgggagtc gtgattcagg acatggacgt tatctcgcgc aaggccgacg acgacgcggc
     2161 gccgcagccc gcgcccgatg cgggcgaggc gcagccgcac ggcatgacgg cgcgagacat
     2221 cgagcgcgtc gtcgagcaca gggaggagcg ctacgagcgc gtgcgcgcgc actgaggagt
     2281 gggatgccgt tcgacgttga agccgtgtat cgctcgaccc gcccggccgt cgaaattgac
     2341 gggcagccgg cggagtctct gaccgcgggg ctcaactccc tgaccatcgt cgagacgacg
     2401 gacggcctct accgctgcga ggccctcttc ggcaactggg gcgagcggga cggcagcgtc
     2461 ggcttcctct acttcgaccg cgcgacgctc gacttcggca agcccttcaa gatcaagctc
     2521 ggcgactcga cgctgttcga cgggcgcgtg atggggctcg aagggcagtt cggggcgggg
     2581 agcgcgccgc agataaacgt cctcgccgaa gaccgcctgc aggacttacg catgacgcgc
     2641 cgcacgcgca ccttcgcaga cgtgaccgac gcagatattt tcaaccagat cgccggcgag
     2701 cacggcctaa ccccctcggt tgacttgagc ggccccacct acaaggtgct cgcgcaggtg
     2761 aaccagagcg acctcgcctt cctgcgcgag cgcgcccgca gcgttgacgc agagctttgg
     2821 gtcgaaggct cgacccttaa cgcgaagaag cgcgcagacc gcgacgccgg caccataaag
     2881 atgattcacg gcggcaagct cttcgacttc acggtagcgg ccgacctcgc catgcagcgc
     2941 acgagcgtca gcgtctcggg ctgggacgtt gcgagcaagg acgagattaa gttcgaggcc
     3001 gacgactccg cgctcggcgg cgagcttggc tcggacgaga gcggcgcgag catactccag
     3061 tccgcgctcg gcgaccgaaa ggaatcgctc acgcacacag tccccttgag cagcgacgag
     3121 gcgcaggccg cggccgaggc tttcttccgt atgagcgcgc gccgcttcct cgtcgggcgc
     3181 ggcacggccg agacgagcgc agaccttcgc gtcggctgct tcctggactt gcagggcctc
     3241 ggcgacctct tcagcggcaa gtaccacgtc accgaagtcc gacacatgtt cgacctatcg
     3301 aacggcctgc gcaccgagtt cagggccgag cggcccggca tcggcacacc ttaaaacggc
     3361 gaaaaggcac aggggatgcg aggaacacta tcacttgaag gcgtcataga agcgcggcag
     3421 acggcgggct tgggcggccg ctggtacggc gtcttccccg cgctcgtgag cgacattgtt
     3481 gacccggagg ggcaggggcg cgtcaaggtc acgctcccgt gggcgcccga cactgccggc
     3541 gcgaagtacg acacgtgggc gcggctcgcg accttcatgg gcgggaacaa tagagggagt
     3601 tggttcatcc ccgacgtgaa cgacgaggtg ctcgtagtct tcgaggcggg cgacccgcgg
     3661 cggccttacg tcatcggcgg cctctggaac ggcaccgacg ccccgcccga ctcaatggac
     3721 ggcgcgggca acaacttccg caaagtgctg cgctcgcgca acggcgtcaa ggtcacgctg
     3781 gacgacaccg acgggcagga gaagatgatt ctcgagacgc ccggcgggca gaagataacg
     3841 atgaaggacg gccccggcgc cgtcgagata gttgacagca acggcaactc aataaagctc
     3901 gagacgagcg ggataaccgt gacggcctcg gcgaaagtca ccgtgaacgc aacgctcgtg
     3961 caggtctcgg cgagcatggt gacggtggac gccggcatgt cgaagttcag cggcgtcgtg
     4021 cagtgcgaca cgctgatcag caactgcgtc gtcagcgcct cgtacacgcc gggcgccggc
     4081 aacatctggt gagccttcgg aagatggaag acatagtcca gtggacgaac ccttcgccca
     4141 tgtggccggc ctcgggcggc gacacggcgg gcgcaggcga catcgccgag acgcgccgcg
     4201 cgatgcgtcg gccggccatc ctgcgcttcg ccacagacac cttcatggaa gacctgtcgg
     4261 cgctgatgga gaacgagccg tggcggctgg gcgagttcgt cgccaagccc gagacgtggc
     4321 gcgggccttt gacgacgccc gctcccgccg agcgcgtgcc gcgcttcctc ctcaagaacg
     4381 agcgcttcgc caagctcgta ggcgcgcggg ccggcgctaa cttccgggcc gcggggctgg
     4441 ctttgaaaac cggagcgagc ggcggcggca acggcggcgg cccggaggtc gaagacggcg
     4501 aagagaagcc gacgctcaag ctctaccagc cggcgcacca gcgctactac atgatcgcgg
     4561 gctgcctcgt ctgccgaagg ccgggcctgc cggacaaggc tttgcagacg aaccgcgagg
     4621 agcgcgtcac gttcgtcatt cgcaggctca tgccctccgc gccgggctct gcgccgcagg
     4681 ccaacgcggc cgtgaagggc ttcgacgagc acgccttcgt caacaagagc tggcagaagc
     4741 tcactggtac ggccaggcag ttggccgagg gcgaggatca gccggccctc tcgcccctga
     4801 gcttcactga cggcgcgggc cgaaagcggc gaatgctggt cgggctgata cccgtcgcaa
     4861 agcgcgaggc ttacatgggc gcgcctccgg cccccgcggg gggcgcaggc gcggcgtcgc
     4921 cgggcgtctt ggcgaagacg gaacgcaaga tgctcttccg ctctcaggtc ggcgagccct
     4981 ggaagcgcat catcgagacg gccttcacga cgagcaagtc cctcgacctc tcgggcctcg
     5041 acgacgacga caagcccgac gacgcgcagc gcagccgcca gcgcaaggag gcgcgcgagc
     5101 aggcgcagat ttcgtcctgg tacgttctgc tcgacttcgc gaagttcctg aagcagttcg
     5161 tgccgaaagt ttgggacgcg atagacggca ggcagccggc ctcgtcgctg acggagattg
     5221 ccgagcagaa tctctacgag gcgctcggca atgtccaggt taccgccgcg ctgaaggcgg
     5281 cgctactctt aaaccagccc ttctttctgc cgcagccggc ctacgcaagc gacgacgtgc
     5341 cggcttcgat gcgcgacgcc ctcaagctcg ctctcgcgca ggagaagcta ctggacgagg
     5401 tctcgacgcc gtacgaccgc gagaactccg cgaaggcagc cgcctggccg cccttcatct
     5461 tcccgctcgc ggaccccgac cccgccctct tccagagcgc cccctcgctc gccaacggca
     5521 tcccgccgct cggcgaggcc gatttcgtca agccagacga ggtcatcgcc gaggcgaacg
     5581 acgcggcgaa gcaagagctt ctggacggcg ttgacgacat gaccgccctc gtcgtccgcg
     5641 cgatgccgaa ggaatcgagc gcgcccgcgc cgcctccgcc gctcgcgtcg cagccgctcc
     5701 tcgacccctc catgcgcgag ggcctcttcg tcgtccgctg cgtctatgag cggcccctct
     5761 gcgagccgtt cgagccgccc gaagtaagcg acccgagcga gccgttccag atggcgggct
     5821 tcttcgaccc ggacgcgccg gcccggccca tacgcatcgc gctcccgatt gacacctcgc
     5881 ccgcgggcct acggaagttc gacaagaata ccgccttcat gatctcggac gtgctctgcg
     5941 ggcagattca gcgcatgaag agcctgacct tcggcgacct cgtgctctcg gttctgccgt
     6001 ggccttttca caaagacctg tccgccgccg ccccagactc gggcgcgtgc aagtcgggcg
     6061 ggaatctcga gatagggatg atctgctcgc tgtcgctgcc gataatcacc atctgcgcgc
     6121 tgctgctgct gatcatcatc gtcttcctgc tcgacatagt cttcaagtgg attccttact
     6181 tcttcatctg cttccctata ccggggttca agggcaagaa gtgaaaagga gactcgtatg
     6241 agcgcgggcc gaatattcgg gcgcgggata gccttcccgc cgcgcgtcgg gagcgacggg
     6301 cgcgtggcct ggtcggaggg cgaggcgaac gtgcgcgagg cgatacggat aattctgatg
     6361 acggagcggc gcgagcgcat aaggctcccc gacttcggcg gcggcgtcgg cctatacctc
     6421 ttcgagccga acacggtcgc cacccgcgcg aggataaagg actggatgac gcgcgctctc
     6481 aaggagtggg agccgcgcat cgtcgtcgag tccattgccg tcgaggaaga cccggaggac
     6541 aggcaggccg ccgtcgccac catcacctac aagctggtgg cgacgcaggc gctacaggcg
     6601 attcgcgtga gcgtcacgct gaacggatga agggtgtgag ggactatgcc gctgctgatc
     6661 cccaagattg acgaccgacg ctaccaggag cttctggacg aggcgctggc gcgcataccc
     6721 gtccacaacc ccgagtggac gaacttcaac aagagcgacc ccggcgtcac gctcctcgaa
     6781 gtcttcgcct tcatggcgga gagcatcctc taccgcgcca accagatacc cgagcgcaac
     6841 cggctgaagt tcctctcgct cctcggcgtc ccgctacaga cggcgtcgtc ggcgcgcggc
     6901 ctcgtcgtct tcacgaacga gcgcgggccg ctctccacca tcacgctcaa ccgcgacgtg
     6961 gaagtgcgcg ccgggcaggt tccgttccgc accacccacg gcctcgacgt gctgcccgtc
     7021 gagggtcagg tctattacaa gcgcccggtg gagaaccctt cgaccaaggt gcgagagtat
     7081 tacgagcagc tctacgcttc gttcaaagac ccggac
//
LOCUS       DASPKR010000397         2808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_573734, whole genome shotgun sequence.
ACCESSION   DASPKR010000397 DASPKR010000000
VERSION     DASPKR010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2808)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_573734"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..776)
                     /locus_tag="VD968_10715"
     CDS             complement(<1..776)
                     /locus_tag="VD968_10715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14901.1"
                     /translation="MRFKAIYGVDFSGARLAGRNTWVARVERNGRRAGESPYKLTTLA
                     RLEDLCGTAERAGALGHLVELIAGSESALWALDFPFGLPVEVMGGERWARQFDFLREW
                     GEDDYGVGLECIRRAEGLGREKHVRRLTDLEEKAPFDPYHYRIIYQTFYGMRDVLGPV
                     RGRRHTAILPFQYGRLATARRVLVEACPASTLKRMGLPHQNYKQPEGGPLTRKRRRVR
                     RQILDGLATHLHINSTDRLRIMRNGGGDALDAVIAALGALR"
     gene            complement(864..1346)
                     /locus_tag="VD968_10720"
     CDS             complement(864..1346)
                     /locus_tag="VD968_10720"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYE14902.1"
                     /translation="MSDKANYRPEGYHNVTPYICVDGAARAIEFYKEAFGATEIMRME
                     APGGGKIGHAEIRIGDSVIMLADEHPELDFRSPHTVGGNSAHFMIYDEDVDARVERAI
                     AAGAKLTRPVKDQFYGDRAGGVQDPFGHHWHIATHVEDLSPEEVKRRMDAEMAKGSAA
                     "
     gene            complement(1538..1966)
                     /locus_tag="VD968_10725"
     CDS             complement(1538..1966)
                     /locus_tag="VD968_10725"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYE14903.1"
                     /translation="MADQSKSLVNTVELGRAIRRKREEMGLSLRDVADETGVSASTLS
                     RIENGTGKPDADNIARLTAWLNMPMERVMGAQPADGSEAASPVVYFPHEATPDIVEAH
                     LRADRNLNPETAKALSELFRVAYAQFSAPGTDARGRKGRK"
     gene            2186..2374
                     /locus_tag="VD968_10730"
     CDS             2186..2374
                     /locus_tag="VD968_10730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14904.1"
                     /translation="MSDAIWETFDSLFKTVHRQGRRVEELERKVSELERRLQERPALA
                     PQPSALEQVSEMPAEKAA"
     gene            2410..>2808
                     /locus_tag="VD968_10735"
     CDS             2410..>2808
                     /locus_tag="VD968_10735"
                     /inference="COORDINATES: protein motif:HMM:NF016330.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SWIM zinc finger family protein"
                     /protein_id="HYE14905.1"
                     /translation="MAAVLDKKSLMRDKRAQGIAAMGLVNREGDRFRVTTPTLRGRRA
                     SYEVWRDEAGKVRCTCLEFEEQSAADASFRCEHILAVKHALLNKSTEAAATARQPAVS
                     KTAAPQAQGGGKQDVAAETPNTQTKDASEKR"
BASE COUNT          473 a          922 c          929 g          484 t
ORIGIN      
        1 cggagcgcgc caagcgcggc tatgaccgcg tcgagcgcgt cgcccccgcc gttgcgcatg
       61 atgcgcaggc ggtctgtgct gttgatgtga aggtgcgtgg cgaggccgtc gagtatctgc
      121 cgccgcacgc gcctgcgctt ccgtgtgagc gggccgccct cgggctgctt gtagttctgg
      181 tgcggaaggc ccatgcgctt taaggttgaa gccgggcagg cttcgacgag caccctgcgc
      241 gccgtcgcga gccggccgta ctggaaaggt aagatggctg tgtggcgacg gccgcggacg
      301 gggccgagca cgtctcgcat gccgtagaag gtctggtaga tgatgcggta atggtagggg
      361 tcgaaaggcg ccttctcttc aaggtcggtc aggcgccgta cgtgcttctc cctgcccagc
      421 ccctccgcgc ggcgaatgca ttcgagcccg acgccgtagt cgtcctcgcc ccactcgcgc
      481 aggaagtcga actgccgcgc ccagcgctcg ccgcccatga cctcgactgg caagccgaac
      541 gggaaatcca gcgcccacag agcgctctcc gaccccgcaa tcaactcaac cagatgcccc
      601 agcgcgcccg ccctctccgc cgtcccgcaa aggtcttcga gccgcgcgag cgtcgtcagc
      661 ttataagggc tctcccccgc cctgcgcccg ttgcgctcga cgcgagccac ccaggtgttc
      721 cgcccggcga ggcgcgcccc gctgaaatca acgccgtaaa tcgccttgaa ccgcaaacct
      781 gactcccccg cgctcgtccc ctttgttgtg cggcggcagg ggcggcgccg acgcacgtcg
      841 aggccgcccc gccgcggtga ttctcatgcc gccgagcctt ttgccatctc ggcgtccatg
      901 cgccgcttga cctcctcggg cgaaaggtct tcgacgtgcg ttgcgatgtg ccagtggtgg
      961 ccgaaggggt cttgcacgcc gccggcacgg tcgccgtaga actgatcctt aacgggccgg
     1021 gtaagcttgg caccggcggc gattgcccgc tcgacgcgcg cgtccacgtc ctcgtcgtag
     1081 atcatgaagt gagcggagtt gccgccgact gtgtgcgggc ttcggaagtc gagctcgggg
     1141 tgctcgtcgg cgagcatgat gacggagtcg ccgatcctta tctcggcgtg acctatcttc
     1201 ccgccgccgg gcgcctccat gcgcattatc tcggtagcgc cgaaagcctc cttgtagaac
     1261 tcgattgcgc gggcggcgcc gtcaacacaa atgtaaggcg tcacgttgtg atagccttcg
     1321 ggccgatagt tcgctttgtc agacatgcct ttctccttcc acaggttcta atctgttcgg
     1381 gagtgccaga ttgatgtcgg attgggccgg ccttgaccgg cccgcaagcg aggttcccga
     1441 attgcgaaaa gacccgcggc ggcggccggg gcatgagaaa ggcgcccggc aacctgagtt
     1501 gcgagcgcct caagaatgtc cggccgtgcc gcttcgttta cttccggccc ttgcggccgc
     1561 gcgcgtcggt gccgggcgcg gagaactggg cgtaggcgac gcggaacagc tcggagaggg
     1621 ccttggcggt ctcggggttg aggttgcggt ccgcccgcag gtgcgcctcg acgatgtcgg
     1681 gcgtggcctc gtgcgggaaa tagacgacgg gcgatgcggc ctcggagccg tccgcgggct
     1741 gcgcgcccat cacgcgctcc atcggcatgt tgagccaggc cgtcaggcgc gcgatgttgt
     1801 cggcgtcggg cttgcccgtg ccgttctcta tgcgcgagag cgtcgaggcc gacacacccg
     1861 tctcgtccgc cacgtcgcga aggctcaggc ccatctcctc gcgcttgcgg cgtatggcgc
     1921 gccccaactc caccgtattt actaagcttt tcgactgatc tgccattttc ggcctcctca
     1981 tccgggcgcc gcttcgccgt ccgccgtaac caccgcgggc gggcgcgccc attcgacacc
     2041 cctgaaaata gcacaagaaa atcccagacg caacaccttg ttttatgctt gcaacaaacg
     2101 ggaacccgtg gtacactgtt tcacgtatga aacagcacgg ggagacgaca ataaagcccc
     2161 ggccgtttca gtaaggagaa aaagggtgag cgacgcaatc tgggagacat tcgacagtct
     2221 tttcaagacg gtgcacaggc agggccggcg cgtcgaggag ttggagcgca aggtctcgga
     2281 gctcgagcgc cgcttgcagg agcgccccgc gctggcgccg caaccctcgg cgctggaaca
     2341 ggttagcgaa atgccggccg agaaggcggc ttgaatcagg ggagcagttt tgacggaggt
     2401 ttgaaggcaa tggcagccgt tctcgacaag aaatctttga tgcgcgacaa gcgcgcgcaa
     2461 ggcatagcgg cgatggggct tgtgaaccgc gagggcgacc gcttccgcgt caccacgccc
     2521 actctgcgcg gccgccgggc cagctacgaa gtctggcgcg acgaggcggg caaggttcgc
     2581 tgtacgtgcc tggagttcga ggagcagtcg gccgccgatg cctcgtttcg ctgcgagcac
     2641 attctcgctg tcaagcacgc ccttttgaac aagagcacgg aggctgccgc caccgcaagg
     2701 cagccggccg tctcgaagac ggccgccccg caggcgcagg gcggcggcaa gcaggacgtt
     2761 gcggcggaga cgcccaacac acagacgaag gacgcatccg agaagcgc
//
LOCUS       DASPKR010000398         4614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_56032, whole genome shotgun sequence.
ACCESSION   DASPKR010000398 DASPKR010000000
VERSION     DASPKR010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4614)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4614
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56032"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..331
                     /locus_tag="VD968_10740"
     CDS             <1..331
                     /locus_tag="VD968_10740"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYE14906.1"
                     /translation="ETMKAATDRLRSGISFGVFAEGTRARPGQLLPFKKGAFYMARDA
                     GVAVVPVAIKNTDALMGKGTGVARPGTIEMVLLPPIETAGVVTDEDVARLARRTNALI
                     AEELKKG"
     gene            complement(345..1238)
                     /locus_tag="VD968_10745"
     CDS             complement(345..1238)
                     /locus_tag="VD968_10745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14907.1"
                     /translation="MKRVFLLAIAVAVVGAASAASARQQQGGAQATTVVNRSGAPEDV
                     EGIIRSFARRESEFRKALNEYSFKRDAVIQTIEPLGGQISGEYHRVSRFVFDDTGKRY
                     EKILHFPIPTLTQITISNEDLDDLGGVQVFALEASNLHEYNIAYVGKERVDELDTYVF
                     DVTPKVLSDQKRLKELKKSKTPQRFFQGRVWVDDRDFQIVKAKGKGVPEFDQRFPTFE
                     TYREHIDGKYWFPTYTYADDELVFKSGQVVRVRMRVKYTDFEPVKGKVRVIETDDLGD
                     DVKGKDPSASPSPTPAAKPKP"
     gene            complement(1367..2218)
                     /locus_tag="VD968_10750"
     CDS             complement(1367..2218)
                     /locus_tag="VD968_10750"
                     /inference="COORDINATES: protein motif:HMM:NF014658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MqnA/MqnD/SBP family protein"
                     /protein_id="HYE14908.1"
                     /translation="MASTQTQARTITVAHSPDSDDAFMFYGLATGKIDTGGLRYEHVL
                     EDIQTLNEKAMRGVYDVTAVSFHAYAYISDKYALLPHGASIGEGYGPIVVAREPHSVE
                     DLPRLKVAVPGTLTSAFLSLRILNPDFAYEVVPFDRIIEVVQQGRADAGLLIHEGQLF
                     YQKLGLHKVVDLGEWWKERTGLPLPMGGNAVRRGLGEETIALVSRHLRESISFSLEHR
                     RDALQYAMQFARDMDEATADRFVGMWVNQLTLDYTERGRLAVQRLLDEGHERGIIPHR
                     VAADFVG"
     gene            complement(2266..3036)
                     /locus_tag="VD968_10755"
     CDS             complement(2266..3036)
                     /locus_tag="VD968_10755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14909.1"
                     /translation="MEESSTETGKAGQDDLALVLSFAARGQTAGEGDDEGDAAGRLIA
                     AGDLAEFTAVALGRLAGAGRKEVLRRALGFAVPLPGETVERSFVILFSALEAALTFSR
                     GEDEFEIVPREEFTRMERDLKNWLRQHPALAGEPARRALVYEKTRELNRLPFSRVFER
                     FCERHGVELSDLWPLTGPLDEWPLLEIRHRLVHGDPLESRPAAALLCAREHLRWTAER
                     MLLALLGWPVEKSNVSPPRLAAVSEAHRRWPEERARLA"
     gene            complement(3171..4283)
                     /gene="mqnE"
                     /locus_tag="VD968_10760"
     CDS             complement(3171..4283)
                     /gene="mqnE"
                     /locus_tag="VD968_10760"
                     /inference="COORDINATES: protein motif:HMM:TIGR03700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HYE14910.1"
                     /translation="MNFSHDTRLLEIAEKVEAGERLTFDDGMALFATEDLPALGRLAD
                     AVRRRLHGRVTYYNVNRHFNPTNVCYADCKFCGFFRTPRQPDAYTHNVDEAVRLAGEA
                     VAEGATELHIVGGLNTKLPFSYFTDLLSSIKSRYPRLHLKAWTMVELDHFAHFYKMSD
                     EEVIGQLKAAGMGSCPGGGAEIFAEPTRSSICAHKTGAERWLELSGKVHAAGLKTNAT
                     MLYGHVETIEDRVDHLVRLREQQDKSGGFQCFIPLAFYPPGTKLSHLPGPTGVDSLKT
                     MAVSRLMLDNFAHIKSYWVMLGKRLAQVALHYGANDLDGTITEGGELTVSYSVEAGNE
                     VKMSKQEIVALIEGAGLEAVERDTLYRPVEREAVPA"
     gene            complement(4288..>4614)
                     /locus_tag="VD968_10765"
     CDS             complement(4288..>4614)
                     /locus_tag="VD968_10765"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HYE14911.1"
                     /translation="YACQDYDFDRRAGLRSVPARLGVGRALWVSRALHAGAFAALVAL
                     YFSTSPGALALAGVAATGALLVYQHSLVRADDLSRLNAAFFTTNAFVSVILLATFGGA
                     VLLKRV"
BASE COUNT          748 a         1523 c         1535 g          808 t
ORIGIN      
        1 agagacgatg aaggccgcga ccgaccgcct gcgctccggc atctccttcg gcgtcttcgc
       61 cgaggggacc cgcgcgcggc ccggccaact ccttcccttc aagaagggcg ccttctacat
      121 ggcgcgcgac gcgggcgtgg ctgtagtccc cgtagccatc aagaacaccg acgcgctgat
      181 gggcaagggg actggcgtgg cgcggcccgg caccatcgag atggttctgc tgccgccgat
      241 tgagacggcg ggcgtggtga cggacgagga cgtggcgcgc ctcgccaggc gcaccaacgc
      301 cctcatcgcg gaggagttaa agaagggtta gacgggcgcg ggcttcaggg cttgggcttc
      361 gccgcgggcg tgggcgaagg ggaggccgaa gggtctttgc ccttcacgtc gtcgccgagg
      421 tcgtcggtct cgatgacgcg aaccttgcct ttgaccggct cgaagtccgt gtacttgacg
      481 cgcatgcgga cgcgcacgac ctgcccgctc ttgaagacca gctcgtcgtc ggcgtaggtg
      541 taggtcggga accagtactt gccgtcaatg tgctcgcggt aggtctcgaa cgtggggaag
      601 cgctgatcga actcggggac gcccttgccc ttcgccttca caatctggaa gtccctgtcg
      661 tcaacccaca cgcgcccctg gaagaagcgc tgcggcgtct tcgacttctt cagctccttc
      721 agccgcttct ggtcggagag gactttcggc gtcacgtcga agacgtaggt gtcgagctcg
      781 tcaacgcgct ccttgccaac gtaggcgatg ttgtactcgt gcaggttcga cgcctcgagc
      841 gcgaacacct gcacgccgcc gaggtcgtcg aggtcttcgt tcgagatggt tatctgcgtg
      901 agcgtgggga tcgggaagtg gagaatcttc tcgtagcgct tgccggtgtc gtcgaagacg
      961 aagcgcgaga cgcggtggta ctcgccggaa atctgcccgc cgagcggctc gatggtctgt
     1021 atgacggcgt cgcgcttgaa gctgtactcg ttgagggcct tgcggaactc cgactccctg
     1081 cgcgcgaacg agcggatgat gccctccacg tcttccggcg cgcccgagcg gttgacgacc
     1141 gtcgtcgcct gggcgccgcc ctgttgctgc cgcgcgctcg ccgccgatgc cgcgcccacg
     1201 acggccacgg ctattgctaa caaaaacact cttttcataa cttttttgat gagcttctgg
     1261 gaaccgggga cggctcgggc gtgcctgccc ccaacgagat tttagaggcc gcccgccgag
     1321 cgcatatttc gatgcgcccg ccccgcgcgg tgttgccacc ccggatttaa ccgacgaagt
     1381 cggccgcgac gcggtgcggg attatgccgc gctcgtggcc ctcgtcgagc aggcgctgga
     1441 cggctagtcg cccgcgctcg gtgtagtcga gcgtgagctg gttgacccac atgccgacga
     1501 agcggtcggc cgtcgcctcg tccatgtcgc gcgcgaactg catcgcgtac tggagcgcgt
     1561 cgcggcggtg ctccagcgaa aagcttattg actcgcgcag gtgtcgcgac acgagcgcaa
     1621 tcgtctcctc accaagcccg cggcgcacgg cattgccgcc catcggaagc ggcagccccg
     1681 tcctctcctt ccaccactcg cccaagtcaa ccaccttgtg aagccccagc ttctggtaga
     1741 agagctgccc ctcgtgtatg aggaggccgg cgtccgcgcg cccctgctgc acgacctcga
     1801 ttatccggtc gaaggggacg acctcgtagg cgaagtcggg gttgagtatg cgcaaggaga
     1861 gaaaggcgct cgtgagcgtc cccggcacag cgaccttcag gcgagggagg tcttcgaccg
     1921 aatgcggctc gcgcgcgacg acgatggggc cgtagccctc gccgatggag gcgccgtgcg
     1981 ggagcagcgc gtacttgtcg gagatgtatg cgtatgcgtg gaagctcacg gccgtcacgt
     2041 catagacgcc gcgcatcgcc ttctcgttca aggtctgtat gtcttcgagc acgtgctcgt
     2101 agcgcaagcc ccccgtgtca atcttgcccg tcgccaggcc gtagaacatg aaggcgtcgt
     2161 cggagtcggg cgagtgcgcg acggtaatcg tgcgcgcctg cgtctgtgtg cttgccaaaa
     2221 tattccttcc ctcttttcag cccgacgatt tgccgcgggg ccgtctcacg cgagccgcgc
     2281 ccgctcttcg ggccagcgcc tgtgcgcctc ggaaactgcg gcgaggcgag ggggcgacac
     2341 gttcgacttc tcgacgggcc agccgaggag cgccagaagc atcctctcgg ccgtccagcg
     2401 caggtgctct cttgcgcaga ggagggccgc ggccggcctg ctctccaaag ggtcgccgtg
     2461 gacgagcctg tggcgaatct cgagaagcgg ccactcgtcg agaggccccg tcaggggcca
     2521 aaggtctgac agctcgaccc cgtgccgttc gcagaacctc tcgaacacgc gcgagaaggg
     2581 caggcggttc agctcccgcg tcttctcata gacgagcgca cggcgcgccg gctcgcccgc
     2641 gagcgcgggg tgctgcctca gccagttttt caagtcgcgc tccatgcgcg tgaactcttc
     2701 gcgggggacg atctcgaact catcttcgcc gcgcgagaac gtgagcgccg cttcgagcgc
     2761 cgagaagagt atgacgaaag agcgctcaac cgtctcgccc ggcagcggga ccgcgaagcc
     2821 gagcgcacgc ctcaagacct ctttccgccc cgcgcccgcg agccgcccga gggcgacggc
     2881 cgtgaactcc gcgaggtcgc ccgccgcgat gagacggccc gcggcgtcgc cttcatcatc
     2941 cccctcgccg gccgtctgac cgcgcgcggc gaaggagagt accagcgcga ggtcatcctg
     3001 ccccgccttc cccgtctccg tgctcgactc ttccaagcga cccctactca gtccttcgac
     3061 ttaccgtcgc ccccgcttga tgatgagctt cgtcgccctc taaatctctt cgttggtcac
     3121 gggcaaattc tccttctcgc agagtcttcg ggcgggcgac gcggagttta tcacgcgggg
     3181 acggcctcgc gctcgacggg gcggtagagc gtgtcgcgct ccaccgcttc gagcccggcg
     3241 ccctcgatga gcgcgactat ctcctgcttc gacatcttca cctcgttccc ggcctcgacc
     3301 gagtagctga cggtcaactc gccgccctcg gtgatggtgc cgtcaaggtc gttcgcgccg
     3361 tagtgtagcg cgacctgcgc gagccgcttg ccgagcatga cccagtagga ctttatgtgc
     3421 gcgaagttgt cgagcatcag gcgcgagact gccatcgtct tcagggagtc cacgcccgtg
     3481 gggccgggca ggtgcgagag cttcgtcccc ggcgggtaga aggcgagcgg gatgaagcac
     3541 tggaagccgc cggacttgtc ctgctgctcg cgcaaacgga cgaggtggtc aacgcggtct
     3601 tctatcgtct cgacgtggcc gtagagcatc gtcgcgttgg tcttcaggcc cgccgcgtga
     3661 accttgccgg aaagctccag ccagcgctcc gcgcccgtct tgtgcgcgca gatggaggag
     3721 cgcgtgggct cagcgaaaat ctccgcgccc ccgccggggc atgagcccat gccggcggcc
     3781 ttcaactgcc cgatcacctc ctcgtccgac atcttgtaga agtgcgcgaa gtggtcgagc
     3841 tcaaccatcg tccaggcctt taggtgcagg cgcgggtagc gcgacttgat ggacgagagc
     3901 aggtctgtga agtagctgaa cggcagcttg gtgttgaggc cgccgacgat gtgaagctcg
     3961 gtcgcgcctt cggcgacggc ctcgccggcg agcctgacgg cttcgtcaac gttgtgcgtg
     4021 taggcgtcgg gctgccgggg cgttcggaag aagccgcaga acttgcagtc ggcgtagcag
     4081 acgttcgtag ggttgaagtg gcggttgacg ttgtagtagg tcacgcgccc gtgcagccgt
     4141 cgccgcaccg cgtcggcgag ccggccgagc gcgggcaggt cttcggtggc gaacagcgcc
     4201 atgccgtcgt cgaacgtcag tcgctcgccc gcctcgacct tctcggctat ctctaggagc
     4261 cgcgtgtcgt gtgaaaagtt cataaagtca gacccgtttc aagagcaccg cgcccccgaa
     4321 ggtcgcgagc agaatgacgc tgacgaaggc attcgtcgta aaaaaagccg cgttcagtcg
     4381 cgagaggtcg tcggcccgca cgagcgagtg ctgatagacc aggagcgccc cggtcgccgc
     4441 cacgcccgcc agcgccagcg cgcccggcga agtcgaaaag tatagcgcga cgagggccgc
     4501 gaacgccccg gcgtggagcg cccgcgagac ccagagagcg cggcctacgc cgagccgcgc
     4561 aggcacggag cgaaggcccg cccggcggtc gaagtcgtag tcctggcagg cgta
//
LOCUS       DASPKR010000399         4323 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1607465, whole genome shotgun sequence.
ACCESSION   DASPKR010000399 DASPKR010000000
VERSION     DASPKR010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4323)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4323
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1607465"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..714)
                     /locus_tag="VD968_10770"
     CDS             complement(<1..714)
                     /locus_tag="VD968_10770"
                     /inference="COORDINATES: protein motif:HMM:NF020118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HYE14912.1"
                     /translation="MSASIGQSIDAVCKEKGIDREVVVEAVKEAVRAAARKQFKSGEE
                     IQVEWTPESGLEIFASKVVVEEVENPGRELSLEEARELAGDEVDVGDELQLPLPVEDM
                     GRIAAQTAKQILFQKVRDAERQQVYEQYIDKVGDLVNGYVKRFERGDIIVDLGTVESV
                     LPRNQQSRGEQWNQGERIRVVIDDVSKESKGPQVVTSRTSPELLKRLFEMEVPEIYDG
                     TVVIKSAVREPGERAKIAVA"
     gene            complement(780..1307)
                     /gene="rimP"
                     /locus_tag="VD968_10775"
     CDS             complement(780..1307)
                     /gene="rimP"
                     /locus_tag="VD968_10775"
                     /inference="COORDINATES: protein motif:HMM:NF014617.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000028 - ribosomal small subunit assembly
                     [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HYE14913.1"
                     /translation="MGEEISAQERVREIAERAARERGLELVHAEVAGGARSPVVRVFI
                     DKPGGVTHEDCAEVSRHIGTVLDVEDFIHSAYTLEVSSPGLERGLYKRADYERFAGRA
                     ARMKSSEPVRGQRNFRGRIVGVEGDDVVFDDKTNGRVRVPLASIAKANLEIDTEEEFR
                     AAEEREREKRKMSDA"
     gene            complement(1484..1933)
                     /locus_tag="VD968_10780"
     CDS             complement(1484..1933)
                     /locus_tag="VD968_10780"
                     /inference="COORDINATES: protein motif:HMM:NF020977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HYE14914.1"
                     /translation="MSLKERITGDMTAAMKARDAARTSTLRMVKAALTNREIEKGGEL
                     SDEEVTKALQSLVKQRRDSVEQYEKAGRDELAEKERAEIGVIEEYLPRAASPEEIGRA
                     VEEAIAETGATSMKQMGAVMKAAQARLAGRSADGRAVSEAVKAKLGG"
     gene            complement(1944..3500)
                     /locus_tag="VD968_10785"
     CDS             complement(1944..3500)
                     /locus_tag="VD968_10785"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE14915.1"
                     /translation="MNRTCAVVAVVLLLFVSVCPRVPAQGRRAGRVSAAEAGAGSEQS
                     YRRALAAVEAAIEAHGGLAAMRAAEGVSFKGSGHSFARNQSVGVEPPFDRMEHEESLY
                     ADVRRGRYIFENRDPLPGGFVFGGRAVITGGQGFFANPRDKTVAPMNPANLPANILNY
                     VRRVPHLILVQARERAQTLRHLGTAAFEGRPHQVVTFATANGLQVALFLDARTRLLSK
                     YEQMVTDPQTGDAVQETIFRGYRTVSGLRVPSSRVTTRGGEVIEEVTYTEFLVNTSPP
                     DAAFAKPDGYADIPTPAPLPTRETKLGDGVYLFESGVNSLVVEFADHVLVVEPPVGGR
                     GPKATINKVREMFPSKPIRYVVVTHHHDDHAGGARGYIAEGAALVTTPSNRRYFERMA
                     AGRFTLAPDDQSERRRPARFEFVEGGRRVFTDGRQTVEVIDIGPSPHAREMLVAYLPK
                     EKLVFQGDLVNLPATGRWMPSTVNDTTLHFYDSIRRLGLDVERVASVHGPSTTWGDLR
                     EAVEKKRAGR"
     gene            complement(3663..>4323)
                     /locus_tag="VD968_10790"
     CDS             complement(3663..>4323)
                     /locus_tag="VD968_10790"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYE14916.1"
                     /translation="SHFSFNVPGGRCDVCEGDGTVTVEMQFLADVELVCEECKGTRFK
                     PQILDVRYRGKNINDVLSMTVREAMTFFRDTAKIANRLRVLDDVGLGYLRLGQSATTL
                     SGGEAQRVKLASYLSKRTGSKTLYIFDEPTTGLHFDDINKLLAAFRTLIEAGGSLLVI
                     EHNLDVIKTADYLIDLGPEGGDAGGRLVAAGTPEEVMRAADSHTGRFLKQHLSRSNGH
                     G"
BASE COUNT          651 a         1446 c         1471 g          755 t
ORIGIN      
        1 ggcgacggca atcttcgcgc gctcgcccgg ctcgcgcacg gccgacttga tgacgaccgt
       61 gccgtcgtaa atctcaggca cctccatctc gaagaggcgc ttgaggagtt cgggcgacgt
      121 gcgcgaggtg acgacctgcg gccccttgga ctccttcgac acgtcgtcaa tgacgacgcg
      181 tatgcgctcg ccctggttcc actgctcgcc gcgcgactgc tggttgcggg gcaggacgga
      241 ctcgaccgtg ccgaggtcaa cgatgatgtc gccgcgctcg aagcgcttga cgtagccgtt
      301 gacgaggtcg ccgaccttgt ctatgtactg ctcatagacc tgctggcgct ccgcgtccct
      361 gaccttctgg aagagaatct gcttggcggt ctgcgcggcg atgcggccca tgtcctcgac
      421 ggggaggggg agttgaagct cgtcgcccac gtcaacctcg tcgcccgcga gctcgcgcgc
      481 ctcttcgagc gagagctcgc ggccggggtt ctcgacctcc tcgacgacga ccttcgaggc
      541 gaagatttcc agccccgact cgggcgtcca ctcgacctga atctcctcgc ccgacttgaa
      601 ctgcttgcgg gccgccgcgc gcacggcctc cttgacggcc tcgaccacga cctcgcggtc
      661 tatgcccttc tccttgcaga cggcgtcaat gctttgaccg atgcttgcgc tcataacttt
      721 agacgttaga tatcgggtgc cggatgttag aatctcgcgt ccttaactga catctgacat
      781 caagcatccg acatcttcct cttctcccgc tcgcgctcct ccgcggcgcg gaactcctct
      841 tcggtgtcaa tctccagatt cgccttcgct atagacgcga gcggcacgcg cacgcggccg
      901 ttggtcttgt cgtcaaacac aacgtcgtcg ccctcgacgc cgacgatgcg tccgcggaag
      961 ttacgctggc cgcgcaccgg ctcgctcgac ttcatgcgcg cggcgcggcc tgcgaagcgc
     1021 tcgtagtcgg ccctcttgta gagcccgcgc tcgaggccgg gcgaggagac ttcgagcgta
     1081 taggccgaat gtatgaagtc ttccacgtcg agcaccgtgc ctatgtggcg gctcacctcg
     1141 gcgcagtctt cgtgtgtgac gccgcccggc ttgtcaataa aaaccctcac gacgggggaa
     1201 cgcgcgccgc ccgcgacttc cgcgtgaacc agctccagcc cgcgctcccg cgccgccctc
     1261 tcggctatct cgcgcacgcg ctcctgcgcc gaaatctctt cgcccaacac cccgcgcccc
     1321 tccccggaaa acccccgcgc ccaaaagaaa aagtgggccg agaacccact ggacgacgcc
     1381 accgcgctcc gagcaagagg cgaattatac gggatgcgcg cgggctaagc aagcagccgg
     1441 cccgcgcgcc gcgggagtgg gattagaggg gtgaggcggg cgactacccg cccagcttcg
     1501 ccttgacggc ctcgctgacg gcgcggccgt cggccgagcg gcccgcgagg cgggcctgcg
     1561 cggccttcat caccgcgccc atctgcttca tggaggtcgc tcccgtctcg gctatggcct
     1621 cctcgacggc gcgccctatc tcctcgggcg aggcggcgcg gggcaggtac tcttcgatga
     1681 cccctatctc ggcgcgctcc ttctccgcga gctcgtcgcg gcccgccttc tcgtactgct
     1741 cgacggagtc gcgccgctgc ttgacgagcg actgcagggc cttcgtcact tcctcgtccg
     1801 agagctcgcc gcccttctca atctcgcggt tcgtcagcgc ggccttcacc atcctcaggg
     1861 tcgaagtgcg cgccgcgtcg cgcgccttca tcgccgccgt catgtcgccg gtgattcgtt
     1921 ccttcaggct catgcgcgag agcttaacgc cccgcgcgct tcttctcaac cgcctcgcgc
     1981 aggtcgcccc acgtggtcga ggggccgtgg actgaggcga cgcgctccac gtccagcccg
     2041 aggcggcgga ttgagtcgta gaagtgcaga gtcgtgtcgt tgacggtcga gggcatccag
     2101 cggcccgtcg caggcaggtt gacgaggtcg ccctggaaga cgagcttctc tttgggcagg
     2161 tacgcgacga gcatctcgcg tgcgtggggg ctggggccta tgtctatgac ctcgacggtc
     2221 tgccggccgt cggtgaagac gcggcggccg ccctctacga actcgaagcg ggcggggcgc
     2281 cgacgctcgc tctggtcgtc gggcgcgagg gtgaaccggc cggccgccat cctctcgaag
     2341 tagcggcggt tcgagggcgt ggtgacgagc gcggcgccct cggcgatgta gccgcgcgcg
     2401 ccgcccgcgt ggtcgtcgtg gtggtgcgtg acgacgacgt agcgtatcgg cttagacggg
     2461 aacatctcgc gcaccttgtt gatagtcgcc ttcggcccgc ggccgcccac gggcggctcg
     2521 acgacgagga cgtggtctgc gaactcgacg accagcgagt tgacgccgct ctcgaagaga
     2581 tagacgccgt cgccgagctt ggtctcgcga gtgggcagag gcgcgggcgt cgggatgtcg
     2641 gcgtagccgt cgggctttgc gaaggccgcg tcgggcgggc tggtgttgac gaggaactcc
     2701 gtgtaggtca cttcctcaat gacctcgccg ccacgcgtcg tgacgcgcga ggaggggacg
     2761 cgaagccccg agaccgtgcg gtagccgcgg aagatcgtct cctgaacggc gtcgccggtc
     2821 tgcgggtctg tgaccatctg ctcatacttc gacagcaggc gcgtgcgcgc gtcgaggaag
     2881 agcgccacct gaaggccgtt ggcggtggcg aaggtgacga cctggtgcgg gcggccctcg
     2941 aacgcggcgg tgccgaggtg gcgaagggtc tgcgcgcgct cacgcgcctg cacgaggatg
     3001 aggtgcggga cgcggcggac gtagttgagt atgttcgcgg gcaggttcgc cgggttcatc
     3061 ggcgcgaccg tcttgtcgcg cgggttggcg aagaagcctt ggccgccggt gatgacggct
     3121 cgcccgccga agacgaagcc gcccggcagc gggtcgcggt tctcgaagat gtagcggccg
     3181 cgccgcacgt cggcgtagag gctctcttcg tgctccatgc ggtcgaaggg cggctcgacg
     3241 cccacgctct ggtttcgcgc gaacgagtgg cccgagccct tgaagctcac gccctcggcg
     3301 gcgcgcatgg cggccagccc tccgtgagcc tcgatggcgg cctctaccgc cgcgagcgcc
     3361 ctgcggtaag actgctcgga gcccgccccg gcctccgcgg ccgaaaccct ccccgcccgg
     3421 cgcccctgcg cggggacgcg cgggcagacg gagacgaata acaacagcac gacggcgacg
     3481 acggcgcacg ttctgttcac gggagatacc tcctccaaga attattgcgg tgacggcggc
     3541 gagaaccctg cgggatgggg tgattataca gccgccgcgg ctcgcgtcgg cgacgttgag
     3601 gtaaaagttg tgtaaagaga tgtaaaaagc gggcgcccga gggtgaaggc gcccgccttt
     3661 gtttatccgt ggccgttgga gcgcgagagg tgctgtttga ggaagcggcc cgtgtgggag
     3721 tcggcggcgc gcatgacctc ttcgggcgtg ccggcggcga cgaggcggcc cccggcgtcg
     3781 ccgccctcgg ggccgaggtc aatgaggtag tcggccgtct ttatcacgtc gaggttgtgc
     3841 tcgatgacga ggagcgagcc gcccgcttcg atgagcgtgc ggaaggcggc gagcagcttg
     3901 tttatgtcgt cgaagtgcag gcccgtcgtc ggctcgtcga agatgtagag cgtcttggaa
     3961 ccggtgcgtt tcgacagata agaagcgagc ttgacgcgct gcgcctcgcc gcccgagagc
     4021 gtcgtggccg actggccgag gcgcaggtag cctaagccca cgtcgtccaa gacgcgcagc
     4081 cggttcgcaa tcttcgccgt gtcgcggaag aaggtcatgg cctcgcggac ggtcatgctg
     4141 agcacgtcgt ttatgttctt gccgcggtag cgaacgtcca gaatctgcgg cttgaagcgc
     4201 gtccccttgc actcctcgca gaccagctcc acgtcggcga ggaactgcat ctcgacggtg
     4261 acggtgccgt cgccctcgca cacgtcgcag cgcccgccgg ggacgttgaa ggagaagtgc
     4321 gac
//
LOCUS       DASPKR010000400        13343 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_573987, whole genome shotgun sequence.
ACCESSION   DASPKR010000400 DASPKR010000000
VERSION     DASPKR010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 13343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13343)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13343
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_573987"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(211..891)
                     /locus_tag="VD968_10795"
     CDS             complement(211..891)
                     /locus_tag="VD968_10795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14917.1"
                     /translation="MRTLKLSLTFSLFSLTALAALITTAGAQRRTATSEHPRLAAAAS
                     PKLAVDIPRIPPAVRKLSRMVESPGDLDRATSKLGIEPRLLNFHLAAPIDLTSKGLGR
                     VVHIPVQISERAGGRKSLYYLNPGEEVLAGIFVTDGGVALRYVKRLSGRGVPASTGDA
                     FETRVTNTEGRPVYEERGRLEVLDASRGIGTIVTPGGGDPQEIKVWVYWSCIYVEVEA
                     DEIKKLSQ"
     gene            complement(1099..2082)
                     /locus_tag="VD968_10800"
     CDS             complement(1099..2082)
                     /locus_tag="VD968_10800"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HYE14918.1"
                     /translation="MEAPDFFFNSAGRLRSLWRLAVFTVAFITAMLALWLAVLLGLPL
                     LLPKPLYTQLVESNWGFVLQSVIIFFPALLAGWACCSGLEDLPLRSLGFAPHDGWARD
                     LLVGSLVGAAGIGLALALGAAAGSYRVEKNAGASWQEIGLTLAASSVVLMLGAAAEEM
                     LFRGYALQTLLRSWPVWLALLPTSIAFALVHLDNPNVAPGFTLANTVLAGAWLAVGYW
                     RTRSLWFPLGLHWGWNFAMGPLIGSPVSGITELAAAPPLRTFDAGPAWLGGGAYGIEG
                     GAICTLVMAALAVFTWRTRLVKATYEMRQFTDGENPNPRQAPIVARPGSTP"
     gene            2165..4492
                     /locus_tag="VD968_10805"
     CDS             2165..4492
                     /locus_tag="VD968_10805"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE14919.1"
                     /translation="MRKGIEEFGGGAGAGRRQRRRGAPWLFGSLVLLLLSALVFLQVF
                     GLWEIFTPDTASDTLLIYALSTLNFVAFFLFAFIFVRSLLKLRRERRERQLGSRIKTR
                     LVVYFIAVSLLPITAMALFSYMFFNRTLEKYFSPFPLDVIRQAQQAREERWRERAESL
                     RAQANAAALAVKDDLTASGAPFAAPFVEGGSLAFVGVFDEQGRAVNFNFGRAQMTDQD
                     LSALFRGAGGAPFFELGLTRGRFEVAAAALAGGRVLVAGREAGRPDTLSQLVARAQTF
                     EDFKRNQRKVRMLGLSTLGLLTLMLLFAASWSAIHLARGIGAPVRALAEASREVAGGN
                     LSHRVTVIGDDELAELASTFNDMTAQLAENRRRLEANAAELHDKNLALEERRHYIETV
                     LQTVSTGVISLDGADRVTTINASALAMLRLEHAPPNGAPLSSVVSAEDYALLERVLWR
                     ARMRGRATEQLELARGSAGENSTAAPEGNGGPSHEGNGAGGVVPVALTATALTPREGE
                     GGRGVVLVIEDLSELLAAQRAAAWSEVARRLAHEIKNPLTPIQLSAERIARSFRRATG
                     ENENGAVAQGADDGRVARVVEEGTATITREVEGLKAMVDEFTRFARLPHARLEPADLN
                     EVVRQAVALYEDRLGGARMDVLLGHGLPPALLDSEQLRRVFVNLIDNSLEAMSEVEGD
                     RRVTVATAHDPARGLLIAEVADTGQGIARSDFARLFQPYFTTRGRGTGLGLAIVNRIM
                     TEHGGRIRAESNRPRGARMIIELPVAEEQRQEAGG"
     gene            4499..5905
                     /locus_tag="VD968_10810"
     CDS             4499..5905
                     /locus_tag="VD968_10810"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE14920.1"
                     /translation="MADSILIVDDERGIRDTLRAVLEDEGFEADAVATGEECLKAVER
                     RAYGCLLLDVWLPGIDGLETLRRLRERGTESAVVMISGHATIETAVRATKLGAFDFIE
                     KPLSIEKTVLTVRNALRQRELERVNAALSEGLRDEWVMVGESVAMRALRKQIELVAPT
                     DGRVLIYGESGTGKELVARAIHARSLRAAAPFVELNCSAVPEELIESELFGHARGAFT
                     GATHPKRGKFEQADGATLFLDEVGDMSPRMQAKVLRVLEEQRFEPVGGPAAMRVDVRV
                     LAATNKRLDVEIERGNFRTDLLYRLNVIPFEIPPLRERLEDIPSLVEHFNQRFSLAYK
                     KRPKRFEAEALAALRAYSWPGNVRELRNTIERVVIMHSGAKVGASDLPPLGLEEPLPA
                     PAPFSSFRDASEAHQRDFIRAKLSEAEGNVSRAAELMGMDRSHLYRRMKALGINVREE
                     RAAPREAAVAQDERAPRA"
     gene            complement(6001..8031)
                     /locus_tag="VD968_10815"
     CDS             complement(6001..8031)
                     /locus_tag="VD968_10815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14921.1"
                     /translation="MPQSIDESNAFRDYMRARDVASYLLPGSDVNELLLWPPNLFAFT
                     SYILSVTGSYQLAVSPPRGKSWPPSEAEIRDWHSRDALRDWLLEFSGAGEGDGGAAGA
                     TRADAEALVEKYLSGFDLDAKMAAWMSKARWPEDENGENPWIPMVQEGGDAWREKLAS
                     FEAGVAPTSRDRWALFEEVLARVPVSLLACWAVFSRLAVGTGRDLSKLLCNRDEDDCY
                     DTPAEREEMWQAVGSLLSMHAMTDEACVGWGIRRIYGESLARNFAESLLKSMGTMATI
                     HPDRCRVMPKRHNPNVGITLRSLSCNLAFHRSSVEVVWRESGTNPLTQKIDRDDDEPR
                     RFYMLLLPWPLHVRSECFQPFTKQKPVSMNDASDGFFIYDPGDSLQERDILRPLLRAA
                     QREGEVDMVVLPESAIHFKEVDIFQAALLTSTNPGSENPISALITGVREKPRGATFHR
                     NAVYCKTAEKKERGDGYYFPPGNINDMDQSFKQYKHHRWRLNRSQILQYGLSHKLSTR
                     KNWWEGIKIGRRRVSFINIGRHLTVCPLICEDLARQDPIADLIRAVGPSLVVTILMDG
                     PQKAERWSSRYASVLSEDPGSAVITLTSYGMVRRCNTPFRGQSHVVALWSDGNGPTRE
                     IELAGGAGGILLTLDVKPNREQVADGRIERVATSRIELADVIQVYAEDDNRD"
     gene            8280..10118
                     /locus_tag="VD968_10820"
     CDS             8280..10118
                     /locus_tag="VD968_10820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14922.1"
                     /translation="MTPRPTLKSLAMTLALLVLSATAAAQLPEVKKETEEEKAKARKE
                     LERKALSLLDETLLGVQTLKLGENRAAIRTQAADLLWRHDEKRARSLFRDALNDFIAA
                     RGADGSKRERGWVLVQLRSHILYTAGARDPQLALELLRDSRPPAEDSDGALWGDPEQE
                     LRLEQSILSLAAETDPKEALRMAQESLSKGVTFGVLGMLERLRRRDADAGTKLAGDIV
                     AKLRSENLTARPEATMVAVTLLRNVLVPQAAELFFSGGPPRSGGAAEKPKPLVMTDGD
                     VRDLADLVSAEALRNSPQGNSFGLLMQLQSLLPELEKRVPARAAQLRRRLAEMESTLD
                     PRMRAWAQYDSLASRPPDAILEEAAKTAGEMRAELFKAAAIKLAQSGETERARQVIAD
                     NLRGQEREQMTSLIDQQEVARAVAKGDTEAARAVVSRIKSKERRAGAMADLAVAFALK
                     GDRKTALQMLEEARGLIDRQPDNEREVEALLEVARGYALVEPAKTFELIDPLIDQAND
                     MLAAVALLEKFGAGGGAFKKGEMILSPALDGVGGHYARYVKALGELARVDFDRTKAAA
                     DRFGRDEARIAARLVVARSVLSDKPEPAAAAAILASGGGHAVIISN"
     gene            10317..11483
                     /locus_tag="VD968_10825"
     CDS             10317..11483
                     /locus_tag="VD968_10825"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HYE14923.1"
                     /translation="MDYTTRELLKRYARMAIGQPFAPVLLNILVTSVCDMRCTHCFFT
                     DELDDRPRKKLQMKTHEIQRISETLGGNLGVLIIAGGEPFTRKDLPEIVRAFYENNRL
                     ESVYLMSNGQIQKRIIPDVTRILDECPNLNVAVALGIDGLKGPHEKIRQKPGSWDIAI
                     DTARQLQAIKRERPRLDIQTCTCFMNSNQDSIFEWYDFLKYELRPDKVNFNYIRPPSA
                     DPKELDIDHARYARLARMIDEDSRHAAIKNNYGGEAGFFKAAIDIYMHGLIDRTQREQ
                     KAQMKCYAGTAGAVIYDEGTVSSCENKDAVGNLRAYDWNFQALWRSEAMKARRKEVAA
                     GCFCTHESNSYYPSLPFNPKHLIQIKRLEREMKKASRELAGSRPEEAEGVTVKA"
     gene            11498..12703
                     /locus_tag="VD968_10830"
     CDS             11498..12703
                     /locus_tag="VD968_10830"
                     /inference="COORDINATES: protein motif:HMM:NF018613.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14924.1"
                     /translation="MFRARVPKILIISSDTGGGHRSAAAAIVAGVQKFFAGDSYAVRV
                     VRAVEESHHLSARLVAFYNWVLRHRQHWMKYVYWFVNRFRPETREFFYRRSVGYVRDI
                     FERWCPHVVVSVHPLTQHAFARVLKELGLAGKIPLVTVVTDPCYGFWKGWACDDVTLY
                     LVASEEARQQLIDYGVQPERIKVSGMPVHPKFEQPDERSAQAARSALGLDPQKFTVFV
                     NAGWAGGGNIPHIFRELVRGELDVQAIFLAGRNDELRAEAETLAAAAKFPIKVIGYSE
                     QVEQLMQAANVMVSKLGGLTTFEALACRLPIIADATTPPMPQESGAANLLARRGAGVL
                     LRRPGDIVPVVRKMVEDSRYYSSLRSAAAALAVPDATRRIVEEITALIPAPVMAEEEA
                     GNVVDIRSA"
     gene            12835..>13343
                     /locus_tag="VD968_10835"
     CDS             12835..>13343
                     /locus_tag="VD968_10835"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYE14925.1"
                     /translation="MTGGTRGIGAAVCEVFAREGADVAFNYHSRDELAEEMRKKIEAH
                     GRRAHAFKISVTDRHGLKHMTRELVKEWGGLDILVNNAAVNRGDNFATTTDRAWDEVI
                     NTNVNSLFAVTKPIYKQMIRQRKGSILNITSIGAIRALPTAVHYATSKAAVIGFTKCL
                     AREAANFGVA"
BASE COUNT         2276 a         4566 c         4412 g         2089 t
ORIGIN      
        1 acgcccatct tcgccgtcag ccgcatctcc ggctggacgg gccacatact cgaacagtac
       61 gccaacaacc gcctcatacg cccacgcgcc gagtacacag gcccgcgcgg cctcacctac
      121 gtgccgattg acgagaggtg attgagattt gaatcgttaa tgagggcggg gccggccccg
      181 ccctcatttc tacgtggccc gcgccccggc tcactgcgac agtttcttta tctcgtcggc
      241 ctcgacctcg acgtagatgc agctccagta aacccagacc ttaatctcct gcgggtcgcc
      301 gccgccgggc gtgactatcg tgccgatgcc ccggctcgcg tccagcactt cgagcctgcc
      361 gcgctcttcg tacacgggcc tgccctccgt gttagtgact ctcgtttcga aggcgtcgcc
      421 ggtgctggcc ggcacccccc tgccgctcag gcgcttcacg tatcgcagcg ccactccgcc
      481 gtcggtgacg aaaatgccgg ccagcacttc ctcgccgggg ttcaggtagt agagggattt
      541 tcgcccgccg gcgcgctcgc tgatttgtac ggggatgtgc acgactctgc ccagcccctt
      601 gctcgtaagg tcaataggag ccgccaagtg gaagttgagc aggcgcggct cgatgccgag
      661 cttggaggtc gccctgtcca ggtctcccgg gctctcgacc atacgcgaca gcttcctaac
      721 tgcgggaggt attcgcggga tgtccacggc gagcttgggg ctcgccgccg cggcgaggcg
      781 cgggtgttcg cttgtcgcgg ttctgcgctg ggcccccgcc gtggttatga gcgcggcgag
      841 cgcggtcaaa ctgaagagcg agaatgtgag ggacagtttt aaggttcgca tcgtgcctcc
      901 ttaagggctg ccggttagtt aaggcgaggt gaggttcttt accagcgtta aagaacgact
      961 tcggcggggt cgcttcccga agcggccgtg attgtcgggt ggggcgactt ggtctaatct
     1021 ctcgccctgc tccccgtctg tgagtggcct cttcgggaag aaacgtaacg cggcgggaaa
     1081 gatattttct taatcaactc acggcgtcga gcccggccgc gcgacgatgg gcgcctgccg
     1141 tgggttcggg ttctcgccgt cggtgaactg cctcatctcg taagtcgctt taacgagccg
     1201 cgtgcgccac gtgaagacgg cgagcgccgc catgacaagc gtgcagatgg cgccgccctc
     1261 tatgccgtag gcgccgccgc cgagccacgc aggccccgcg tcgaaggtgc gcagcggcgg
     1321 cgcggccgca agctccgtga tgccgctcac gggcgagcct atgagcgggc ccatcgcaaa
     1381 gttccagccc cagtgcaggc cgagcgggaa ccagaggctg cgcgtgcgcc agtagccgac
     1441 ggcgagccac gcgcccgcga gcaccgtgtt ggcgagcgtg aagccgggcg cgacgttcgg
     1501 gttatccaga tgcactaaag cgaaggcgat tgacgtgggc aggagcgcga gccagacggg
     1561 ccacgagcgc agcagcgtct gcaaggcgta gccgcggaag agcatctctt ccgcggccgc
     1621 gcccagcatg agcacgaccg acgaggccgc gagcgtgagc cctatctcct gccatgacgc
     1681 gcccgcgttc ttctccacgc ggtagctgcc cgccgccgcg cccagcgcga gcgcgagccc
     1741 aatgcctgcc gcgcccacga gcgagcccac gagcaggtcg cgcgcccacc cgtcgtgcgg
     1801 ggcgaagccc agcgagcgca agggcaaatc ttcgagcccg gagcagcagg cccagccggc
     1861 tagcagcgcc gggaagaaga tgatgacgga ttgcagcacg aagccccagt tgctctcgac
     1921 gagctgcgtg tagagcggct tggggaggag gagcgggagg ccgagcagga cggcaagcca
     1981 gagggccagc atcgccgtta tgaaggcgac cgtgaagacg gcgagccgcc acaggctgcg
     2041 cagcctgccc gcgctgttga agaagaagtc gggggcttcc ataaaggtct cgccccgcga
     2101 ctatagccga aagcgccgcg ggaaatcgaa ccgggcgcgg cgcgcgtggt aaactcgcga
     2161 accgatgcgc aagggcattg aagagttcgg cgggggagcg ggggcggggc ggcggcagcg
     2221 ccggcgcggc gccccgtggc tgttcgggag cctcgtcctg ttgctgctct cggcgctcgt
     2281 cttcctacag gtcttcggcc tctgggagat tttcacgccc gacacggcca gcgacacgct
     2341 cctcatctac gcgctctcca cgctcaactt cgtcgccttc ttcctcttcg ccttcatctt
     2401 cgtccggagc cttctgaagc tcaggcggga gcggcgcgag cggcagctcg gctcgcgcat
     2461 aaagacgcgt ctggtcgtct atttcatcgc cgtcagcctc ctgccgataa cggcgatggc
     2521 gctcttctcc tacatgttct tcaacaggac gctggagaag tatttcagcc cgttcccgct
     2581 cgacgtgatc cggcaggcgc agcaggcgcg cgaagagcgc tggcgcgagc gcgccgagtc
     2641 gctccgcgcc caggccaacg ccgctgccct cgccgtcaaa gacgatttga cggcgagtgg
     2701 cgcccccttc gccgcgccgt tcgtagaggg cggcagcctc gccttcgtgg gcgtgtttga
     2761 cgagcagggt agggccgtca acttcaactt cggccgcgca cagatgaccg accaagacct
     2821 ctcggcgctc ttccgagggg ccgggggggc gccatttttc gagttggggt tgacgcgcgg
     2881 ccgcttcgag gtggcggcgg cggcgctcgc gggcgggcgc gtgctcgtgg ccgggcgcga
     2941 ggccggccgg cccgacacac tctcccagct cgtcgcgcgc gcgcagacct tcgaggactt
     3001 caagcgcaac cagcggaagg ttcgcatgct cggcctctcg acgctcgggc tgctgacgct
     3061 catgctgctc ttcgccgctt cgtggagcgc catacacctg gcgcgcggca taggcgcgcc
     3121 cgtgcgtgcg ctcgctgagg cttcgcgcga ggtcgcgggc gggaacctct cacaccgcgt
     3181 caccgtcata ggcgacgacg agttggccga gctggcctcg accttcaacg acatgacggc
     3241 acagctcgcc gagaaccgca ggcggctcga ggcgaacgcc gccgagcttc acgacaagaa
     3301 cctcgcgctc gaagagcggc gccactacat cgagaccgtg ctgcaaaccg tctcgaccgg
     3361 cgtcatctcg ctcgacgggg ccgaccgcgt caccaccatc aacgcctcgg cgctcgccat
     3421 gctgaggctc gagcacgcgc cgccaaacgg ggcgccgctc tcgtcggtgg tgagcgcgga
     3481 ggactacgcc ttgcttgagc gagtgctctg gcgggcgcgc atgcgcggcc gcgcgaccga
     3541 gcagttggag cttgcgcgcg ggtcggcggg cgagaacagc acggcggcgc cggaagggaa
     3601 cggcggcccg tcgcacgagg gcaacggcgc gggcggcgtc gtccccgtcg cgctcacggc
     3661 caccgcgctc acgccgcgcg agggcgaggg cgggcgcggc gtcgtgctag tcatcgagga
     3721 cttgtccgaa ctcctcgcgg cccagcgcgc ggccgcctgg agcgaggtcg cgcgccgcct
     3781 cgcgcacgag ataaagaacc cgctcacgcc aatacagctc tcggccgagc gcatcgcgcg
     3841 cagcttccgc cgcgccacgg gcgagaatga gaacggcgct gtcgcgcagg gcgccgacga
     3901 tggccgcgtc gcacgcgtgg tcgaggaagg cacggcgacg ataacgcgcg aggtcgaggg
     3961 actgaaggcg atggttgacg agttcacgcg cttcgcacgg ctgccgcacg cccgtctcga
     4021 gcccgccgat ttgaacgagg tcgtgcggca ggccgtcgcg ctctacgaag accgcttggg
     4081 cggcgcgcgc atggacgtgc tgctcggcca cggcctgccc ccggcgctgc tcgactcgga
     4141 gcaactccgg cgcgttttcg tcaacctcat tgacaactcg ctcgaagcca tgtcggaggt
     4201 cgagggcgac cggcgcgtga cggtggcgac ggcgcacgac ccggcgcgcg gcctcctcat
     4261 cgccgaggtg gcggacacgg ggcagggcat cgcgcgctcc gacttcgcgc gcctcttcca
     4321 gccgtacttc accacgcgcg ggcgcggaac ggggctcggc ctcgccatcg tcaacaggat
     4381 aatgaccgag cacggcggcc gcatacgcgc cgagtcgaac cgcccccgcg gcgcgcgcat
     4441 gataatcgag ctgcccgtgg cggaagagca gaggcaggag gcggggggct aggcgcacgt
     4501 ggcggactca atccttatcg ttgacgacga gcgcgggata cgcgacacgc tgcgggccgt
     4561 gctggaggac gagggcttcg aggctgatgc cgtcgccacg ggcgaggagt gcctgaaggc
     4621 cgtcgagcgc cgcgcctacg gctgcctgct tttagacgtt tggcttcccg gcattgacgg
     4681 gctagagacg ctccggcgcc tgcgcgagcg cggcacagag tcggccgtcg tcatgatctc
     4741 gggccacgcg actatcgaga cggccgtgcg cgccacgaag ctcggcgcct tcgacttcat
     4801 agagaagccg ctctcgattg agaagaccgt gctcaccgtc cgcaacgccc tgcgtcagcg
     4861 cgagctagag cgggtcaacg ccgccctctc cgagggcctg cgcgacgagt gggtgatggt
     4921 cggcgagtcg gtggcgatgc gcgcgctgcg caagcagata gagctggtcg cgcccacgga
     4981 cgggcgcgtg ctcatctacg gcgagtcggg gactggcaag gagctggtcg cccgcgcaat
     5041 acacgcgcgc agcctgcgcg cggccgcgcc cttcgtcgag ctcaactgct cggccgtccc
     5101 cgaggagctc atcgagtctg agctgttcgg ccacgcgcgt ggcgccttca ccggcgcgac
     5161 gcacccgaag cgcggcaagt tcgagcaggc ggacggcgcg accctcttcc tcgacgaggt
     5221 gggcgacatg agcccgcgca tgcaggcgaa ggtcttgcgc gtcctcgaag agcagcgctt
     5281 cgagcccgtg ggcggcccgg ccgccatgcg cgttgacgtg cgcgtgctcg ccgcgacgaa
     5341 caagcgcttg gacgttgaga tagagcgcgg caacttccgc acagacctcc tctaccgcct
     5401 caacgtcata cccttcgaga taccgccgct gcgcgagcgg cttgaagaca tcccgtccct
     5461 ggtcgagcat ttcaaccagc gcttctcgct agcgtacaag aagaggccga agcgcttcga
     5521 ggccgaagcg ctggcggcgc ttcgcgccta ctcttggccc ggcaacgtgc gcgagcttcg
     5581 taacaccatc gagcgcgtag tcatcatgca ctcgggggcg aaggtcggcg cgtcagacct
     5641 cccgccgctc ggcctcgaag aacccctgcc cgcccccgcg cccttctcct ccttccgcga
     5701 cgcgagcgag gcgcaccagc gcgacttcat acgcgcgaag ctgtcggagg ccgagggcaa
     5761 cgtctcccgc gcggccgaac tgatgggcat ggacaggagc cacctatacc gccgcatgaa
     5821 ggcgctcggc ataaacgtcc gcgaggagcg cgccgcgccg cgcgaggcgg ccgtcgcgca
     5881 ggacgagcgc gccccccgcg cctgaaagcc cgaaaaaagt tgtgagctaa attcttctct
     5941 ctgtgcccgc tcttcgctcg tcgcgcgcgc tccggcgcca cgccccctca ccacgccccc
     6001 tcagtcgcgg ttatcgtcct cggcgtaaac ctgtatcacg tcggccagtt ctatgcgcga
     6061 ggtggcgacg cgctcgatgc ggccgtcggc gacctgctcg cggttgggct taacgtccag
     6121 agtgagtagg atgccgccgg cgccgcccgc cagctctatc tcgcgcgtgg ggccgttgcc
     6181 gtcgctccag agcgccacga cgtgcgactg gccccggaag ggcgtgttgc acctgcgcac
     6241 catcccgtag gaggtgagcg tgatgacggc gctgcccggg tcttccgaga gcacgctcgc
     6301 gtagcgcgac gaccagcgct cggccttctg cggcccgtcc atcaggatcg tgacgacgag
     6361 cgaggggccg acggcgcgta taaggtcggc tatggggtct tggcgtgcga ggtcttcgca
     6421 gatgagcggg cagacggtca ggtggcggcc gatgttgatg aagctcacgc ggcggcggcc
     6481 gatctttatg ccctcccacc aattcttgcg cgtcgagagc ttgtggctca gcccgtactg
     6541 gagtatctgc gacctgttca gcctccagcg gtggtgcttg tactgcttga aggactgatc
     6601 catgtcgttg atgttgccgg gcgggaagta gtagccgtcg ccccgctcct tcttctcggc
     6661 cgtcttgcaa tagacggcgt tgcggtggaa ggtcgccccc cgcggcttct cgcggactcc
     6721 ggtgatgagg gcgctgattg ggttctcact cccggggttg gtcgaggtga gcaaggctgc
     6781 ctggaatatg tccacctcct tgaagtgtat ggccgactca ggcagcacga ccatgtcaac
     6841 ctcgccctcg cgctgggcgg cgcgcagcag cggccggagt atgtcgcgct cctgaagtga
     6901 gtcgccgggg tcgtagatga agaagccgtc ggaggcgtcg ttcatgctga cgggcttctg
     6961 cttggtgaag ggctggaagc actccgagcg gacgtgcagc ggccaaggca gcaggagcat
     7021 gtagaagcgg cgcggctcat cgtcgtcgcg gtctatcttc tgcgtgagcg ggtttgtgcc
     7081 ggactcgcgc cagaccactt cgaccgagga gcggtggaag gccaggttgc acgagagcga
     7141 gcggagcgtt atcccgacgt tcgggttgtg cctcttcggc atgacgcggc agcggtcggg
     7201 gtggatggta gccatcgtcc ccatgctctt cagcagcgac tcggcgaagt tgcgcgcgag
     7261 cgactcgccg tagatgcgcc ttatgcccca gccgacgcat gcctcgtccg tcatcgcgtg
     7321 catagagagc agagagccga cggcttgcca catctcttcg cgctccgcgg gcgtgtcgta
     7381 gcagtcgtcc tcgtcgcggt tgcagaggag cttcgagagg tctctgcccg tgccgacggc
     7441 cagccggctg aagacggccc agcaggcgag cagcgagacc ggcaccctcg ccagcacctc
     7501 ctcgaagagc gcccaccggt cgcgcgaggt cggggcgacg cccgcctcga agctcgccag
     7561 cttctcgcgc catgcgtcgc cgccctcctg aaccatcggt atccaggggt tctcgccgtt
     7621 ctcgtcctcc ggccagcggg ccttagacat ccaggccgcc atcttcgcgt cgaggtcgaa
     7681 gcccgagagg tacttctcga cgagcgcctc ggcgtcggcc ctcgtggccc cggccgcgcc
     7741 gccgtcgccc tcgcccgcgc cggagaactc aaggagccag tcccgcagcg cgtcgcgcga
     7801 gtgccagtcg cgtatctctg cctcgctcgg cggccagctc ttccccctcg gcggcgagac
     7861 tgccagctgg tacgaccccg tcacgctcag tatgtagctc gtgaaggcga acaggttcgg
     7921 cggccagagc agcaactcgt tcacgtccga gcccggcaga aggtacgagg ccacgtccct
     7981 cgccctcatg tagtccctga aggcattcga ctcgtctatt gactgaggca tgttcggggt
     8041 ctccactttt gagataaggc gtgaggctga cgagatgttg gcgacgccag cggagaaaaa
     8101 cgcggcaaag attatgcccg ccggtcgccg catgtcaacg aaaattccgg cccccgcgca
     8161 cgggcgttct tcgcgcgggg ccgactcgtg tacaatccgg gccaatccga cggggccagc
     8221 cgcaaccgtc tcccgcgccg cgaaggcccg cccgaagtcg tgcagtaagg agtaaagcca
     8281 tgacgccccg accgacactc aagtcgctcg cgatgacact cgcgctgctc gtgctctccg
     8341 cgacggcagc ggcgcagttg ccggaggtca agaaggagac ggaagaggag aaggcgaagg
     8401 cgcgcaagga gctggagcgc aaggcgctct cgctcctgga cgagacgctc ctgggcgtgc
     8461 agacgctcaa gctcggcgag aaccgcgccg ccatccgcac gcaggccgca gacctgctct
     8521 ggcggcacga cgagaagcgc gcccgctcgc tattccgcga tgccctcaac gacttcatcg
     8581 ccgcgcgggg cgccgacggc tccaagcgcg agcgaggatg ggtgctcgtg cagctccgct
     8641 cgcacatcct ctacacggcg ggcgcgcgcg acccgcagct agcgctcgag ttgctgcgcg
     8701 actcgcgccc gccggccgaa gacagcgacg gcgcgctttg gggcgacccg gagcaggagc
     8761 ttaggctcga acagtccatc ctctcgctcg cggccgagac agacccgaag gaggccctgc
     8821 gcatggccca ggagagcctg agcaagggcg tgaccttcgg cgtgctgggg atgctcgaaa
     8881 ggctcaggcg aagggacgcc gacgcgggga ctaagctcgc gggcgacatt gtcgccaaac
     8941 tgcgcagcga gaacctgacg gcgcggcccg aggcgacgat ggtcgccgtc acgctgctgc
     9001 gcaacgtcct tgtgccgcag gcggccgaac tttttttctc cggcgggccg ccccggtctg
     9061 gcggcgcggc ggagaagccc aagccgctcg tgatgacgga cggcgacgtg cgcgacctcg
     9121 cagacctcgt gtcggctgag gcgctcagga actcgccgca ggggaactcg ttcggcctgc
     9181 tgatgcagtt gcagtcgctt ctgcccgagc tagagaagcg cgtgccggcg cgcgccgcac
     9241 agctccggcg caggctagcc gaaatggaga gcactctcga cccgcgcatg agggcctggg
     9301 ctcagtacga ctcgctcgcg agccgtccgc cggacgcgat actcgaggag gccgcgaaga
     9361 ccgccggaga gatgagggcg gaactcttca aggccgcggc catcaagctc gcgcagtcgg
     9421 gcgagacgga gagggcgcgg caggtcatcg ccgacaacct gcgcgggcag gagcgcgagc
     9481 agatgacctc gctgattgac cagcaggagg tggcgcgcgc cgtcgcgaag ggcgatacgg
     9541 aggcggcgcg tgccgtcgtc tcgcgcatca agtcgaagga gaggcgcgcg ggcgccatgg
     9601 cagacctggc cgtcgccttc gccctgaagg gcgaccgcaa gacggccttg cagatgttgg
     9661 aagaggcgcg cggtctcata gaccgtcagc ccgacaacga gcgcgaggtc gaggcgctcc
     9721 tcgaagtcgc gcgcggctac gcgctcgtcg agcccgcgaa gacgttcgag ctgattgacc
     9781 cgcttattga ccaggcgaac gacatgctcg cggccgtggc gctgctggag aagttcggcg
     9841 cagggggcgg cgccttcaag aagggcgaga tgattctgtc gcccgcgctc gacggcgtcg
     9901 gcggccacta cgcgcgctac gtaaaggcgc tcggcgagct ggcgcgcgtt gacttcgacc
     9961 gcacgaaggc cgccgccgac cgcttcggcc gcgacgaggc gcgcatcgcc gcccgcctag
    10021 tcgtcgcacg cagcgtcctc tctgacaagc ccgaaccagc cgctgctgct gccattctcg
    10081 ccagcggggg cggccatgcc gtcatcatct ctaactgaag ccgcgcttta aggtaaaaaa
    10141 actccgacat ttaggcccat caacaaccca cgccgcgccc gcgcggggca tcaaaacctc
    10201 tcgcccctgc cggctcgggg cgcgtgcgcg tctgcgctcg gaaattgagc ccgcatctgt
    10261 taggctattg cgtccccggc gccgcaaaca gtagcgccac gggcgaaggg tagaagatgg
    10321 attacactac gagagaactc ctaaaacgct acgccaggat ggcaatcggg cagccgttcg
    10381 cgcccgtgct cctgaatatt ctggtgacga gcgtgtgcga catgcgctgc acccactgct
    10441 tcttcacgga cgagctagac gaccgcccgc gcaagaagtt gcagatgaag acgcacgaga
    10501 ttcagcgcat atccgagacg ctcggcggca acctcggcgt gctcatcatc gcgggcggcg
    10561 agcccttcac gcgcaaggat ttgcccgaga tagtccgcgc cttctacgag aacaaccgtc
    10621 tcgaatccgt ctatctgatg tcgaacgggc agattcagaa gcgcatcatc ccggacgtga
    10681 cgcgtatact cgacgagtgc ccgaacctca acgtcgccgt cgccctcggc attgacggcc
    10741 tgaaggggcc gcacgagaag atccgccaga agcccggctc ctgggacatc gctattgaca
    10801 cggcacggca gcttcaggcc atcaagcgcg agcgcccgcg cctagacatt cagacctgca
    10861 cctgcttcat gaactcgaac caggattcga tcttcgagtg gtacgacttc ctgaagtacg
    10921 agctgcggcc cgacaaggtc aacttcaact acatacggcc cccttcggcc gacccgaagg
    10981 agctcgacat agaccacgcg cgctacgcca ggctcgcgcg gatgattgac gaagactcgc
    11041 gccacgccgc catcaagaat aactacggcg gcgaggccgg cttcttcaag gccgccatag
    11101 acatctacat gcacggcctc atagaccgca cgcagcgcga gcagaaggcg cagatgaagt
    11161 gctacgccgg caccgccggc gccgtcatct acgacgaagg caccgtctcg tcgtgcgaga
    11221 acaaggatgc ggtcgggaac ctccgcgcct acgactggaa cttccaggcg ctctggcgct
    11281 ccgaggccat gaaggcccgg cgcaaggagg tcgcggcggg gtgcttctgc acacacgagt
    11341 cgaacagcta ctacccgagc ctccccttca acccgaagca cctgattcag atcaagcgcc
    11401 tcgagcgcga gatgaagaag gccagcaggg aactcgccgg cagcaggccc gaggaggccg
    11461 aaggcgtgac cgtcaaggct taacagtcag cagcccgatg ttccgagcgc gcgtccctaa
    11521 aatcctgatc atctcgtccg acacgggcgg cggccaccgc tcggcggcgg cggcaatcgt
    11581 cgcgggcgtg cagaagtttt tcgcgggcga ctcctacgcc gtccgcgtcg tccgtgccgt
    11641 cgaggagtcg caccacctct cggcccgcct tgtcgccttc tacaactggg tgctgcgcca
    11701 ccgccagcac tggatgaagt acgtctattg gttcgtcaac cgcttccggc ccgagacgcg
    11761 cgagtttttc taccgccgct cggtcggcta cgtccgagac atattcgagc gctggtgccc
    11821 gcacgtcgtc gtgagcgtcc accccttgac gcagcacgcc ttcgcgcgcg tgctcaagga
    11881 gcttgggctc gccggcaaaa tcccgctcgt caccgtcgtc acagacccct gctacggctt
    11941 ctggaagggc tgggcctgcg acgacgtgac gctctacctc gtcgcgagcg aggaggcccg
    12001 ccagcagctc attgactacg gcgtgcagcc agagcgcata aaagtttcgg gcatgcccgt
    12061 ccacccgaag ttcgagcagc ccgacgagcg ctccgctcaa gccgcccgca gcgccctcgg
    12121 cctcgacccg cagaagttca ccgtcttcgt caacgcaggc tgggccggcg gcggcaacat
    12181 cccgcacata ttccgcgagc tcgtgcgcgg cgagctggac gttcaggcca tcttcctcgc
    12241 cggccgcaac gacgagctgc gcgccgaggc cgagacgctc gccgccgccg ccaagttccc
    12301 catcaaggtc ataggctact ccgagcaggt tgagcagctc atgcaggccg cgaacgtcat
    12361 ggtctctaag ctcggcggcc tgaccacctt cgaggctctc gcctgccgcc tgcccatcat
    12421 cgccgacgcc accaccccgc cgatgccgca ggagtcaggg gccgccaatc tcctcgcgcg
    12481 ccgcggcgcc ggagtgctct tgcgccgccc gggcgacatc gtccccgtcg tgcgcaagat
    12541 ggtcgaggac tcgcgctact actcatcgct gcgctcggcc gccgccgccc tcgccgtccc
    12601 cgacgcaacg cgccgcatcg tagaggagat aaccgccctc atccccgcgc ccgtcatggc
    12661 cgaagaggag gccggtaacg tcgttgacat acgctcggcc tgagcggtcg ctcgcctcga
    12721 atttgactcg ccccaccgtt taagttttaa tcaaagccgc tctgtcaacc ggaaataatc
    12781 tgcacgggga gacaccctgc tttgagtctt cttcttgaag ggaagcgtgc gttcgtgacg
    12841 ggggggacgc gcggcatcgg cgccgccgtc tgcgaagtct tcgcccgcga gggcgcggac
    12901 gtggccttca actaccactc acgcgacgag ttggccgaag aaatgcgcaa gaagatagag
    12961 gcgcacggcc gccgcgcgca cgccttcaaa atctccgtca cagaccgcca cgggctcaag
    13021 cacatgacca gggagcttgt gaaagagtgg ggcggcctcg acatcctcgt caacaacgcc
    13081 gccgtcaacc gcggcgacaa cttcgccacc accaccgacc gcgcctggga cgaggtcatc
    13141 aacacgaacg tcaacagcct cttcgccgtc accaagccca tctacaagca gatgattcgg
    13201 cagcgcaagg gctccatcct caacataacc tccatcggcg ccatacgcgc cctccccacg
    13261 gccgtccact acgcgacctc gaaggcggcc gtcatcggct tcaccaagtg ccttgcgcgc
    13321 gaggcagcga acttcggcgt cgc
//
LOCUS       DASPKR010000401        12158 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_963131, whole genome shotgun sequence.
ACCESSION   DASPKR010000401 DASPKR010000000
VERSION     DASPKR010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12158)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12158
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_963131"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(204..986)
                     /locus_tag="VD968_10840"
     CDS             complement(204..986)
                     /locus_tag="VD968_10840"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011996181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HYE14926.1"
                     /translation="MLLVMDVGNTNTSLGVFEGEALAHHWRLTTERARTVDEYGVHAR
                     NLFAFAGLDFRDITAVAIASVVPQLNHTLRRMSEVYFHLTPLFIDHTTDTGLTILYDP
                     PSDVGADRIVDAVAAVHKYGTPCVVVDFGTATNFEVIDTGGRYLGGVLTPGIQISSDA
                     LFARAARLPRVAIERPHRVIGASTVDAIQSGLYYGYAGLVDGILRRMIEELGRTPRVV
                     ATGGLAPLIATASEFIEVVDKTLTLDGLRLVHERSRRQAAGS"
     gene            complement(992..2299)
                     /locus_tag="VD968_10845"
     CDS             complement(992..2299)
                     /locus_tag="VD968_10845"
                     /inference="COORDINATES: protein motif:HMM:NF018434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE14927.1"
                     /translation="MSLKLSGKRIVISTFGSFGDVHPYIAIALELKRRGHRPVIATSE
                     IYREKTEAVGLELHPVPPDIPSYDRPDEVRRMIKGLVDARKGPERVFKEIILPNLRGQ
                     YDALAEATRGADLLLTHVLSLAAPALVEKTGIRWASSVLAPISFFSVYDPPVPPQLPA
                     LHKLFSLHPSVMRAFMVLARRQLRSFAEPVYRMRAELGLGRGGHPLLEGQHSPSLVLA
                     LFSSVLMAPQPDWPPGTHVTGFCFYDRRDRAGDPQGVDPALLKFLDEGEPPVVFTLGS
                     SAVWAAEDFYHESITAARSLGVRALLLTGGVAGNLPAGPLPAGVAAFDYAPYGEVLPR
                     ARAVVHQGGVGTTGQTLRAGVPALVVPFSHDQFDNGARVARLGAGRVLPRPKYNAASA
                     ARELRPMLEDESYAQSAAEVGRRVRAEGGTRTACDLLERLLGG"
     gene            complement(2296..3087)
                     /locus_tag="VD968_10850"
     CDS             complement(2296..3087)
                     /locus_tag="VD968_10850"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HYE14928.1"
                     /translation="MSFTPIVMRFESLPSTNTEAARQAALGAPEGLCVVAREQTAGRG
                     RQGRSWASPKGAGLYVSVVLRPRMDAKDWPLITLAAALAVREAVKEVCALDADIKWPN
                     DLLAGGRKLCGILAETVETPGGRAVVLGVGVNLDDRAFPSELNETATSVAGEAGQPCD
                     ADELLGALTRSLARWHETLQREGGPARVVAEWESHSSFARGRRVRVSLPGETFEGVTR
                     GLEPDGALRVETDGRSLRRVRAGDVLALRPGAGKGAGARQERQRR"
     gene            3195..4016
                     /locus_tag="VD968_10855"
     CDS             3195..4016
                     /locus_tag="VD968_10855"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HYE14929.1"
                     /translation="MTQNRAALVVLLVSLFTSACGPQQQPRAQAPQFPSGAVVDLSHP
                     YDEQTVFWPTAEGFKLEKVAEGVTGKGFYYAANNFSTAEHGGTHIDAPIHFAAGRHTV
                     DAIPLEQLMGAAAVVDVSEKCSRDADYQVSTDDFAAWERVHGRIPDGAILILRTGFGR
                     RWPDRKSYMGTDERGPDAVAKLHFPGLHPAAARWIIENRRVKAVGLDTPSIDYGQSTL
                     FESHRTLFERDIPAFENLANLDRLPATGAHVIALPMKIKGGSGGPLRAVAIVAQQ"
     gene            complement(4021..4539)
                     /locus_tag="VD968_10860"
     CDS             complement(4021..4539)
                     /locus_tag="VD968_10860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HYE14930.1"
                     /translation="MFCPQCGQQQTNEAMRFCPRCGFPLGGVAALLEAGGAAEGPGAE
                     GGALTRRQRGVRKGLLTMAGAFVFGLLALFLTTIKEDLFVLIVLALFVLVGGLMRALY
                     ALLLEDNEAQGRHAPNYSPTTPLRDAPQRAALPHARSIPADAYARSPDTAEMARQQPS
                     ITDSTTKLLDEK"
     gene            complement(4542..6389)
                     /locus_tag="VD968_10865"
     CDS             complement(4542..6389)
                     /locus_tag="VD968_10865"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYE14931.1"
                     /translation="MTSKRSRTYAFGPFLLDPREGVLLRGGEPVQLTPKAFDTLVALV
                     EHGGHVMGKDELMRRVWPDSFVEENNLSQNISQLRKALQGEGEGAPVYIETVPRRGYR
                     FRAPVVERGGDVEEIVVVRERRRARVVVEEETSEAAPASKRGDVTVIARAVGGERPAP
                     PAEFPEALMRVPETKYARSGDVNIAYQVLGDAPLDLVFVMGWVSHLEYFWREPGFARF
                     LRRLASFSRLILFDKRGTGLSDRVPLNELPTLEQRMDDVRAVMEAAGSERAALCGVSE
                     GGPMSALFAATYPEKTAALVMIGTYAKRIWDADYPWAPTAEERQEFYELMQREWGGPV
                     GLEERAPSVAHDPAFRDWWAEYLRMGASPGAALALTKMNADIDVRGVLPTIRVPTLVI
                     HRAGDECLRAEEGRYVARSIPGAKYVELPGRDHLPFVGDQGAILDEVEEFLTGVRHAQ
                     EPDRVLATVLFMRAVPRGGRGAEGGAGGDVMARLRAHVRKEIDWFRGREIDMTGEGPL
                     ATFDGPARAIRAACAITEHASRLGVETRAGLHTGECDMLAGGGVGGLAVEIGREVSAR
                     AEPGEVLVSSTVRDLVAGSGIRFQDRGSHSFHQPLAEWRLFKVERGRGR"
     gene            6557..6865
                     /locus_tag="VD968_10870"
     CDS             6557..6865
                     /locus_tag="VD968_10870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14932.1"
                     /translation="MKRRTEITIETERILLINRRAGSSRPRCPVCAQAAGMVPEGEAA
                     ALLGVTIEELRRAAVAVGAHTLVEGGGRLLLCLESLLSPEAEGRTVEMRTDDGRTYQP
                     "
     gene            6892..9846
                     /locus_tag="VD968_10875"
     CDS             6892..9846
                     /locus_tag="VD968_10875"
                     /inference="COORDINATES: protein motif:HMM:NF018449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SBBP repeat-containing protein"
                     /protein_id="HYE14933.1"
                     /translation="MRSPIVRGARPLVLLLALAGLFHLAVPRATAARPAAARAVRFAG
                     ARPAGEIPDSLQTEAGGREGARVAESYGKLPLQFEANRGQTDSRVRFLARGDGYNLFL
                     TPREAVFSLLSPEGRRDVLRMSLVGSKRSPKISGEGELGGKSNYYSGSDRRRWVRDVP
                     SYARVRYEKVYPGVDVVYYGRQRELEYDFHLAPGADPASITLAFEGADALRLDAEGDL
                     VLQVGGRSLTHTAPVVYQDDGGARRPVEGSYVLKGEGRVGFRVGEYDPRLPLVIDPVA
                     KIGFSTFHGGEGDDNAFSVAVSAAGSAVVAGTTLSTDYPSSNGDPDENFGNRQDAFIT
                     KFNPDGTGTLYSVYLGGWRADAAIAVALDPAGNAYVTGTTNSFDFPTTPGVVDERRNR
                     SIARGSTFFGDDVFVTKLDTGGAIVYSTFLGGDDDDDGAGIAVDAAGRAYVTGETGSA
                     RFPVKNEFQNDLLFGASTDVFLTVFNSEATGLIYSSYLGGKTFDTATSVAIDSDGNAY
                     VTGVTDSVDSFPVKGPSGPFQAQHAGRDDLFVAKFNPFAAGEASLVYSTLVGGGGTDH
                     GLAVAVDGAGRAHVTGVTGSFDFPLFAAEGAEVLDRENVINEAFILAVNADGSRLDFS
                     TLFGGDGQDTGRGIRLDAAGNIYVAGNTTSVNGFPLKNAFQSVIGGGVANSDAFAAKL
                     APDARKVLYSSYLGGKESDVGFALDIDARGNAYVAGDAVSDDFPTTDGVAQRERAGSG
                     DTFLTKIGELNPDTVGVFNPSALQFQLRNENAAGAPDITVDFGEAGDLPVAGDWDGDG
                     VTDVGVFRPAAGQFFLLVGGQTITVTFGQAGDLPVAGDWDGDGEDSVGVFRPSKGQFF
                     LTNTNALQTTIDFNFQFGANGDLPIAGDWDADGLDEVGVFTPAAGLFSLTNSNESPNI
                     DITVAFGVKGDRPVAGDWDGDGVDSVGVFSPSVAQFFLTNTNAEATTIDFNFQFGAAG
                     DLPVAGDWDGTP"
     gene            complement(9958..11172)
                     /locus_tag="VD968_10880"
     CDS             complement(9958..11172)
                     /locus_tag="VD968_10880"
                     /inference="COORDINATES: protein motif:HMM:NF037429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vms1/Ankzf1 family peptidyl-tRNA hydrolase"
                     /protein_id="HYE14934.1"
                     /translation="MAQSGAAESGRLDQIMERLAAFEPVELPFVSLYLNAQANEHGRA
                     DFDRFLRKEFSERAKTFPASSPERASFERDAERIREYLAGEVRPETNGIAIFACAGAG
                     DFFEPIQLEAPIENHRLYIYNQPHLYPLARMMDQYPRYAVLVADTNRARLFVFGRGKT
                     LQTDEVTNVKTKGSKVGGWSQMRYQRHLENYHLQHAKEVVGMLEEVVREDNVQHVILA
                     GDEVIIPLLKEQFPKAVEEKVVDVLSLDINSPEHEIFDASLERMREHDAQEDVEKVKR
                     LVDEYRAGGLAVVGSQDTLEALSMGQVEELVISARQQDIEGDREDVAILSDAEVAEPV
                     VAGIDGGVANIEADSVIVADDLVTRAQQTGARITFVEDATLLEEFGGVGAFLRYRIRP
                     QTTDSAPQPQHA"
     gene            complement(11540..>12158)
                     /locus_tag="VD968_10885"
     CDS             complement(11540..>12158)
                     /locus_tag="VD968_10885"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYE14935.1"
                     /translation="TEGRITLDGRDLREYDLASVRRSVGVIFQDFVRYDLRFDENIGV
                     GEIERVRDYLEAANGGGQAPPPVIISAAEKSLASTLLGRFPAGYRQMLGRRFEGGVGL
                     SGGEWQKVALARAYMREAQLLILDEPTSALDARAEYEVFERFAELMRGRAAVIISHRF
                     STVRMADRILVLDEGRVVEEGSHAELVARGGLYAELFALQAEGYR"
BASE COUNT         1905 a         4211 c         4074 g         1968 t
ORIGIN      
        1 cccgccgacg gatgaacgtc tcctcgatct cagagtagta gttgaagtag ttgaattggc
       61 cgcgccccgg cgaataattc tcggcgcgcg cgcccttcgt tgtgctcatc agttgttcgt
      121 ggccggaata cgaaagcagg gatactggaa cgctcaagac cgggttcggc tcaccccaag
      181 catgaacagg cggcggcgtt tagtcaagag ccagccgcct gccgtctgct tctttcgtgg
      241 acgaggcgca ggccgtcgag cgtgagcgtc ttgtcaacga cttcgatgaa ctcggaggcg
      301 gtggcgatga gcggggcgag gccgcccgtg gcgacgacgc gcggcgtgcg ccccagctcc
      361 tcgatcatgc gccgcagtat gccgtcaacg aggcccgcgt agccgtagta gaggccggac
      421 tgtatggcgt ccacggtcga ggcgcctatt acgcggtgcg ggcgctcgat ggcgacgcgc
      481 ggcaggcggg ccgcgcgcgc gaagagtgcg tccgaggaga tttgtatgcc gggcgtgagc
      541 acgccgccga ggtatcggcc gcccgtgtct atcacctcga agttggtcgc ggtgccgaag
      601 tcaacgacga cgcagggcgt gccgtacttg tggacggcgg cgacggcgtc aacgatgcgg
      661 tcggcgccca catccgaggg cgggtcgtaa agtattgtga gccccgtgtc ggtcgtgtgg
      721 tctatgaaga gcggcgtgag gtggaaatag acctccgaca ttcgcctgag cgtgtggttg
      781 agctgcggga ctacggacgc gatggcgacg gccgtgatgt cgcggaagtc gaggccggcg
      841 aaggcgaaga ggtttcgggc gtggacgccg tactcgtcca ccgtgcgcgc gcgctccgtc
      901 gtcagccgcc agtggtgcgc gagcgcctcg ccctcgaaca cgccgagcga cgtgttggtg
      961 ttgcccacgt ccatcacaag gagcatagct ttcaacctcc gaggagccgc tctaacaggt
     1021 cgcaggcggt tcgcgtgccg ccctcggccc gcacgcgcct tcccacttcg gccgcgcttt
     1081 gagcgtagct ttcatcttcg agcatcggcc gcaattccct cgccgcgctc gcggcgttgt
     1141 acttcgggcg cgggagcaca cggcccgcgc cgagccgcgc gacgcgcgcg ccgttgtcga
     1201 actggtcgtg gctgaagggg actacgaggg cggggacgcc cgcgcgtaac gtctgccccg
     1261 tcgtgcctac gccgccctgg tggacgacgg cccgcgcgcg cgggagcacc tcgccgtagg
     1321 gagcgtagtc gaaggccgcg acgcctgcgg gcagcggccc cgcgggcagg ttcccggcca
     1381 cgccgcccgt cagcagcagc gcccgcacgc cgagcgagcg cgccgccgtt attgactcgt
     1441 ggtagaaatc ctccgccgcc cacacggccg aagagccgag cgtgaatacg acgggaggct
     1501 ccccctcgtc aagaaacttt agaagcgcgg ggtcaacgcc ctgcgggtcg cccgcgcggt
     1561 cgcgccggtc gtagaagcag aagccggtga cgtgcgttcc gggtggccag tccggctgag
     1621 gcgccatcag cacggaggag aagagcgcga gcacgagcga gggcgagtgc tgcccttcga
     1681 gaagcgggtg gccgccgcgc cccagcccca gctccgcgcg catgcgatag accggctcgg
     1741 cgaagctcct gagctgccgc ctcgccagca ccatgaaggc gcgcatgacc gacgggtgga
     1801 gactgaagag cttgtgcagg gccggcagtt gcggcggcac gggcgggtca tagaccgaga
     1861 agaaggagat gggggcgagc acgctcgacg cccagcgtat gccggtcttc tcgacgagcg
     1921 ccggcgcggc gagcgagagc acgtgcgtga gcagcaggtc tgcgccgcgc gtagcctcgg
     1981 cgagcgcgtc gtactgaccg cgcaggttag gcagtatgat ctccttgaag acgcgctccg
     2041 gccctttgcg cgcgtccacc agccccttga tcatgcgtcg gacctcgtcg gggcggtcgt
     2101 aggacgggat gtcgggaggg acggggtgaa gctccagccc gacggcttcg gtcttctcgc
     2161 ggtagatttc cgaagtcgct atgacgggac gatgaccgcg cctcttcagc tcaagcgcta
     2221 tcgctatgta agggtgaacg tcaccgaacg acccgaaggt cgagatgacg atccgcttac
     2281 cgctaagctt caggctcatc tgcgctggcg ctcctgccgg gcgcccgcgc cctttcccgc
     2341 gccggggcgc agggcgagca cgtcgccggc gcggacgcgt cttaagcttc ggccgtctgt
     2401 ttctacacgg agggcgccgt cgggctcgag gccgcgtgtg acgccctcga acgtctcgcc
     2461 ggggaggctc acgcggacgc gacggccacg cgcgaaagag gagtgtgatt cccactcggc
     2521 gacgacgcgg gccgggccgc cctcacgctg gagcgtctcg tgccagcgtg cgagcgagcg
     2581 cgtcagcgct ccgaggagtt cgtcggcgtc gcagggctgg cccgcctcgc cagccacgga
     2641 ggtggccgtc tcgttaagct cagaggggaa ggctcggtcg tcgaggttga cgcctacgcc
     2701 gagcacgact gcgcgcccgc cgggcgtctc gacggtctcg gcgagtatgc cgcagagctt
     2761 cctaccgccg gccagaaggt cgttcggcca cttgatgtcc gcgtcgagcg cgcagacttc
     2821 tttgacggct tcgcggacgg cgagcgcggc cgcgagcgtt atgagcggcc agtccttcgc
     2881 atccatccgc gggcggagca ccacgctgac gtatagcccc gcgcccttcg gcgaagccca
     2941 ggagcgcccc tggcggcccc gcccggccgt ctgctcgcga gccacgacgc acaagccctc
     3001 gggcgccccc agcgcggcct gcctcgccgc ctccgtgttg gtcgaaggca gcgactcgaa
     3061 gcgcatgaca atcggcgtga acgacattcc ctcttccgtc gcgccctttt taacacatct
     3121 gctgtacact cgacgccgaa ttcaccgacg cggccccggc ccgacgccga atctcagacg
     3181 ggaggatttg acccatgacg caaaatagag ccgccctggt tgtgctcctc gtctccctct
     3241 ttacgagcgc ttgcggcccg cagcagcagc cgcgcgcgca ggcgccgcag ttcccctcgg
     3301 gcgcggtcgt ggacttgtcg cacccttacg acgagcagac cgtgttctgg cccacggccg
     3361 aagggttcaa gctggagaag gtcgccgagg gcgtgacggg caagggcttc tactacgccg
     3421 cgaacaactt ctcgacggcc gagcacggcg gcacgcacat tgacgcgccc atccacttcg
     3481 ccgccggccg ccacacggtt gacgcgatcc cacttgagca gttgatgggc gccgcggccg
     3541 tcgtggacgt gtccgagaag tgctcgcgcg acgcggacta tcaggtgagc acggacgact
     3601 tcgccgcgtg ggagcgcgtg cacgggcgga tccctgacgg agcgattctc atcctgcgca
     3661 cgggcttcgg gcggcgttgg cccgaccgaa agagctacat ggggacggac gagcgcggcc
     3721 ccgatgccgt cgccaagctc cactttccgg gcctgcaccc cgcggccgcg cgctggatta
     3781 tcgagaaccg gcgcgtgaag gccgtcgggc tcgacacgcc gagcatagac tacggtcagt
     3841 caaccctctt cgagagccac cggacgctat tcgagcgcga catccccgcc ttcgagaacc
     3901 tcgcgaacct cgaccgcctg cccgcgacgg gcgcgcacgt catcgccctg cccatgaaga
     3961 taaagggcgg cagcggcggc cccctgcgcg ccgtggcgat agtcgctcag cagtagcccg
     4021 ttacttctcg tcgagcagtt tcgtggtgct gtccgtgatg ctcggttgtt gtcgcgccat
     4081 ctccgcggtg tcggggctcc gcgcgtaggc gtcggcgggg atcgagcggg cgtgcggcag
     4141 ggcagcgcgc tgcggcgcgt cgcgtagggg cgtggtcggg gagtagttcg gcgcatgacg
     4201 gccctgcgcc tcattgtctt cgagcagcag ggcgtagagg gcgcgcatca gcccgccgac
     4261 cagcacgaaa agcgcgagca cgatgaggac gaagaggtct tcctttatag tcgtgaggaa
     4321 gagcgcgagc aggccgaaga caaacgcgcc cgccatcgtc aggagccctt tgcgcacgcc
     4381 cctctgccgt ctggtgagag cgccgccttc cgcccccggg ccttccgccg ccccgcccgc
     4441 ttcgagcagc gccgcgacgc cccccagggg aaacccgcag cgcgggcaga agcgcatcgc
     4501 ttcattagtc tgctgctggc cacattgtgg gcagaacatg cctaccgtcc cctccccctc
     4561 tcgactttga agagcctcca ttcggcgagc ggctggtgga agctgtgcga gccgcgatcc
     4621 tggaagcgta tgcctgagcc ggcgacgagg tcgcggacgg tgctcgagac cagaacctcg
     4681 cccggctcgg ccctcgcgct gacctcgcgc cctatctcga cggccagccc gccgacaccc
     4741 ccgcccgcca gcatgtcgca ctcgcctgtg tgcagccccg cgcgcgtctc tacgccgagg
     4801 cgcgaggcgt gctcggttat ggcgcaggcc gcgcgtatgg cgcgagcggg gccgtcgaag
     4861 gtcgcgagcg gcccctcgcc cgtcatgtct atctcgcgcc cgcggaacca gtctatctcc
     4921 ttgcggacgt gcgcgcgcag ccgcgccatc acgtcgccgc cggcgccccc ctccgcgccg
     4981 cgccctccgc gcgggacggc gcgcatgaag agcacggtag ccagaacgcg gtcgggctcc
     5041 tgcgcgtggc gcacgccggt caggaactcc tcgacctcgt cgagtatcgc cccctggtcg
     5101 ccgacgaagg gcaggtggtc gcggccggga agctcgacgt acttcgcgcc gggtatcgag
     5161 cgcgcgacgt agcgcccctc ctcggccctc aggcactcgt cgccggcgcg gtgtatgacg
     5221 agcgtcggca cgcgtatcgt cggcagcacg ccgcgcacgt caatgtcggc gttcatcttc
     5281 gtgagcgcga gcgcggcgcc ggggctcgcg cccatgcgca ggtactcggc ccaccagtct
     5341 cggaacgcgg ggtcgtgcgc gacgctcggc gcgcgctctt ctaaaccgac agggccgccc
     5401 cactccctct gcatcagttc gtagaactcc tgccgctcct cggccgtcgg cgcccacggg
     5461 tagtcggcgt cccatatgcg cttggcgtag gttcctatca tcacgagcgc cgcggtcttc
     5521 tccgggtagg tcgccgcgaa gagcgccgac atcgggccgc cctccgagac gccgcacagg
     5581 gccgcgcgct cgctccccgc ggcctccatg acggcgcgca cgtcgtccat gcgctgttcg
     5641 agcgtgggca actcgtttag cggcacgcgg tctgaaaggc ccgtgccgcg cttgtcgaag
     5701 aggatgaggc gcgagaagga ggcgaggcgg cggaggaagc gcgcgaagcc cggctcgcgc
     5761 cagaagtatt cgaggtgcga gacccagccc atcacgaaga cgaggtcgag cggcgcgtcg
     5821 cccaagacct ggtaggcgat gttcacgtcc ccgctgcgcg cgtacttcgt ctcggggacg
     5881 cgcatcagcg cctcggggaa ctccgcgggg ggcgccggcc tctcgccgcc gacggccctc
     5941 gctatcacgg tcacgtcgcc gcgctttgac gcgggcgcgg cttcggacgt ctcttcctcg
     6001 acgacgacgc gcgcgcgcct gcgctcgcgc actacgacga tctcttccac gtcgccgccc
     6061 cgctcgacga cgggcgcgcg gaagcggtag ccgcgccgcg ggactgtctc gatgtaaacg
     6121 ggcgcgcctt cgccctcgcc ttgcagcgcc ttgcgcaact gcgagatgtt ctgcgagagg
     6181 ttgttctcct cgacgaagct gtcgggccat acgcgccgca tcaactcgtc cttccccatg
     6241 acgtgcccgc cgtgctcgac taaggcgacc agcgtgtcga aggccttggg cgttagctgc
     6301 acgggctcgc ccccgcgcag caggacgccc tcgcgcgggt cgagcaggaa ggggccgaac
     6361 gcgtatgtgc gactcctctt gctagtcatc tacgcacccc ctccggtgcc ttcagaactc
     6421 tttcagaaaa aactcagaag cccctaacga cgcggccggg cgctcgcggc tatcttccga
     6481 gtcgccggtg aggtttaagc gtcaagtagc gccgaggcgg tccggcgacg cccattgtac
     6541 tcaaggagcg ccccgtatga aacgtcgaac cgagatcacg attgagaccg agcgcatcct
     6601 cctcatcaat cgccgcgccg gtagctcacg cccgcgctgc cccgtctgcg cgcaggccgc
     6661 ggggatggtt cccgaggggg aggcggcggc gctgctcggc gtcacgattg aggagttgcg
     6721 ccgcgcggcg gtcgcggtcg gggctcacac gctcgtggag ggcggagggc ggctgctcct
     6781 ctgcctcgaa tcgctcctga gccccgaagc cgaaggccga accgtcgaga tgcggacgga
     6841 cgacggcaga acctatcaac cctgaactta agagaaggag aaatattttt gatgagaagc
     6901 cctatcgtcc gaggcgcccg cccgctcgtc ttgctgctcg cgctcgccgg cctcttccac
     6961 ctggccgtcc ctcgcgcgac cgcggcccgc ccggcagccg cccgcgccgt gaggttcgcg
     7021 ggcgcgcggc ccgccggaga gattcccgat tcgcttcaga cggaagccgg cgggcgcgag
     7081 ggcgcgcgcg tcgcggaatc ttacgggaag ctgccgcttc agttcgaggc gaaccgcggg
     7141 cagaccgact cgcgcgtgcg cttcctcgcg cgcggcgacg gctacaacct cttcctgacg
     7201 ccgcgcgagg cggtcttctc gcttctaagc ccggaggggc ggcgtgacgt gctgcgcatg
     7261 tcgctcgtgg gctcgaaacg gagcccgaag atttcgggcg agggcgagtt ggggggcaag
     7321 agcaattact actcaggctc agaccgtcgg cggtgggtga gggacgtccc gagctacgct
     7381 agggttcgct acgagaaagt ttatccgggc gttgacgtgg tttactacgg caggcagcgc
     7441 gagcttgagt acgacttcca tctcgcgccg ggcgcagacc ccgcaagcat cacgctcgcc
     7501 ttcgagggcg cggacgcgct caggctcgac gcggagggcg atctcgtctt gcaggtcggc
     7561 gggcgcagcc tgacgcacac cgcgcccgtc gtctatcagg acgacggcgg cgcccgccgc
     7621 ccggtcgaag gctcctacgt gctcaagggc gaaggccgcg tcggcttccg cgtcggcgag
     7681 tacgacccgc ggctcccgct cgtcattgac cccgtcgcca aaatcggctt ctcgaccttc
     7741 cacggtggcg agggcgacga caacgcgttc agtgtggcgg tgagcgcggc gggcagcgcc
     7801 gtcgtcgcgg ggaccaccct ctcaaccgac tacccttcga gcaacggcga cccggacgaa
     7861 aatttcggca accgccaaga cgccttcatc accaagttca acccggacgg caccggcacg
     7921 ctctactcgg tctacctagg cggctggcgc gccgacgccg ccatcgccgt cgcgctcgac
     7981 ccggcgggga acgcctacgt caccggcacg accaactcgt tcgacttccc caccactccg
     8041 ggcgtcgtcg acgagaggag gaacaggagc atcgcccggg ggtcgacatt cttcggcgac
     8101 gacgtcttcg tcacgaagct cgacacgggc ggcgccatcg tctactcgac cttcctgggc
     8161 ggggacgacg acgacgacgg ggccggcatc gccgtcgacg cagccggtcg agcctacgtc
     8221 accggcgaga cggggtcggc gcgcttcccc gtcaagaacg agttccagaa cgacctcctc
     8281 ttcggggcct cgaccgacgt cttcctcacc gtgttcaact ccgaggccac gggcttaatc
     8341 tactcaagtt acctcggtgg caagacgttc gacaccgcca ccagcgtcgc catcgactcc
     8401 gacggcaacg cctacgtcac tggcgtgacc gactcagtag actcgttccc cgtcaaaggg
     8461 ccttcggggc cgttccaggc ccagcacgcc gggcgcgacg acctgttcgt ggcgaagttt
     8521 aacccgttcg ccgcaggcga ggcgtcgctc gtctactcca cgctcgtcgg cggcggcggg
     8581 accgatcatg gcctcgccgt cgccgtggac ggcgcgggcc gcgcgcacgt cactggcgtc
     8641 acaggctctt tcgacttccc gctcttcgcc gccgagggcg cggaagtcct cgaccgcgag
     8701 aacgtcatca acgaggcgtt catcctcgcg gtcaacgcgg acggctcgcg gctcgacttc
     8761 tcgaccctct tcggcggcga cgggcaggac acggggcgcg gcatccgcct cgacgcggcg
     8821 ggcaacatct acgtcgcggg caacacgacc tccgtgaacg gctttccgct gaagaacgcc
     8881 tttcagtcgg tcatcggcgg gggcgtggcc aactccgacg ccttcgccgc caagctcgcg
     8941 cccgacgcgc gcaaggttct ctactcaagc tacctcggcg ggaaggagag cgacgtcggc
     9001 ttcgcgctcg acatagacgc gcgcggcaac gcctacgtgg cgggcgacgc cgtctcggac
     9061 gatttcccca ctacggacgg cgtcgcccag cgcgagcgcg ccgggagcgg cgacaccttc
     9121 ctgacgaaga taggcgagct gaaccccgac accgtcggcg tcttcaaccc ttcggcgctt
     9181 cagttccaac tgcgcaacga gaacgccgcg ggcgcgccag acatcaccgt ggacttcggc
     9241 gaggccggcg acctgcccgt cgcgggcgat tgggacggcg acggcgtcac cgacgtgggc
     9301 gtcttccgcc ccgccgccgg gcagttcttc ctgcttgtcg gcggccagac gattaccgtc
     9361 accttcgggc aggcgggtga tttgcccgtg gcgggcgatt gggacggcga cggcgaagac
     9421 tcggtgggcg tcttccgccc ctcgaagggg cagttcttcc tcaccaacac gaacgcgctt
     9481 cagaccacga ttgacttcaa cttccagttc ggcgcgaacg gcgatttgcc catcgccggc
     9541 gactgggacg cggacggctt ggacgaggtc ggcgtcttca cccccgccgc cgggctgttc
     9601 tcccttacca actcgaacga gagcccgaac atagacatca cggtcgcctt cggcgtaaaa
     9661 ggcgaccggc cggtcgcggg cgactgggac ggggacggcg ttgattcggt cggggtcttc
     9721 agcccctccg tcgcgcagtt cttcctgacg aacacgaacg ccgaagccac caccattgac
     9781 ttcaacttcc agttcggcgc cgcgggcgac ctccccgtgg cgggcgactg ggacggcacg
     9841 ccttagaaca tctgaaagga gggaagcaac aaagagtcag gcaaaaagca gttaggcaaa
     9901 aaagtagggt gagaggcggc gtgcctctca ccctactttt ttgccttccg cgtcgtctca
     9961 ggcgtgctgc ggctgcggcg ccgagtcggt cgtctgcggg cgtatgcggt agcgcaggaa
    10021 ggcgcccacg ccgccgaact cttccaggag cgtcgcgtcc tctacgaagg ttatgcgcgc
    10081 gcccgtctgc tgcgcccgcg tcacgaggtc gtcggcgact atgacggagt cggcctctat
    10141 gttagccacg ccgccgtcaa tgcctgcgac gaccggctcc gcgacttcgg cgtcggagag
    10201 gatagccacg tcctcgcggt cgccctcgat gtcctgctgc cgcgcagaga tcacaagctc
    10261 ctcgacctgc cccatcgaga gcgcttcgag cgtatcctgc gagccgacga ccgcgaggcc
    10321 gccggcgcgg tactcgtcca ccagccgctt gaccttctcc acgtcctcct gtgcgtcgtg
    10381 ctcgcgcatc ctctccaagg acgcatcgaa tatctcgtgc tcgggcgagt tgatgtcgag
    10441 cgagagcacg tcaactacct tctcctcgac cgccttcggg aactgctcct tgaggagcgg
    10501 gattatcacc tcgtcgcccg cgagtatgac gtgctgtacg ttgtcttcgc gcacgacctc
    10561 ctcgagcatc ccgaccacct ccttggcgtg ttgcaggtgg tagttctcga ggtggcgctg
    10621 gtagcgcatc tgcgaccagc cgccgacctt cgagcctttg gtctttacgt tcgtgacctc
    10681 gtcggtctgc aaggtcttgc cgcgcccgaa gacgaagagg cgagcgcggt tcgtgtcggc
    10741 gacgagcacg gcgtagcgcg ggtactgatc catcatgcgc gccagcgggt aaaggtgcgg
    10801 ctggttgtaa atgtacaggc ggtggttctc gatgggggct tcgagctgga tgggctcgaa
    10861 gaagtcgccg gccccggcgc aggcgaagat ggctatgccg ttggtctcgg gccgaacctc
    10921 gccggcgagg tactcgcgta tgcgctcggc gtcgcgctcg aagctggcgc gctcggggct
    10981 gctcgcgggg aaggtcttcg cgcgctcgct gaactccttt cggaggaagc ggtcgaagtc
    11041 cgcgcgcccg tgctcgttgg cctgcgcgtt aaggtatagg ctcacgaaag gcaactcgac
    11101 cggctcgaac gccgccagcc gctccattat ctgatccagc ctgccgctct ccgctgcacc
    11161 actctgcgcc atctgttatg tctccccttt cgtcctgttg aataaagttt tgcgaacctc
    11221 tccgagcgcg gcaggctagc tcgccccgcc gcggcttcca aatttcttac agggggaatc
    11281 ggttgtaccg gatattagca cgcgcccgcc gagcctaaca acgccgcccc cggcgcaaaa
    11341 acgccccaga cgcgatatcc ttctgcgccc cctctgcgca ctccgcgcct gcggcggtga
    11401 attttcggat gaaatacttt ctcggccttt gtcataaggg ggtgaaaggg cgttttttgc
    11461 ccacatttca ccccagcgcc tttgcggctc gaccgcaaag cctgctgaac gggccggccc
    11521 tcctccgccg gcccgtccct tatctgtagc cttcggcctg caaggcgaaa agctcggcgt
    11581 agaggccgcc gcgcgcgacc agctctgcgt gcgagccctc ctcgaccacg cggccctcgt
    11641 ctaagacgag tatgcggtcg gccatacgga cggtagagaa gcggtgggag atgatgacgg
    11701 ccgcgcgccc gcgcatgagc tcggcgaagc gctcgaagac ctcgtactcg gcgcgggcgt
    11761 cgagcgccga ggtcggctcg tcgagtatga ggagctgcgc ctcgcgcatg taggcgcgcg
    11821 cgagcgcgac cttctgccac tcgccgcccg agagccccac cccgccctcg aagcggcgcc
    11881 cgagcatctg tctgtacccg gccgggaagc gcccgagcag cgtcgaggcg agggacttct
    11941 cggccgccga gatgatgacg ggcggcgggg cctgcccgcc gccgttcgcg gcttcgaggt
    12001 agtcgcgcac gcgctcaatc tcgccgacgc ctatgttctc gtcgaagcgc aggtcgtagc
    12061 gcacgaagtc ctggaagatg acgccgacgc tgcggcgcac ggacgcaagg tcgtactcgc
    12121 gcaggtctcg cccgtcgagc gtgatgcgcc cctcggtc
//
LOCUS       DASPKR010000402         2779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_57146, whole genome shotgun sequence.
ACCESSION   DASPKR010000402 DASPKR010000000
VERSION     DASPKR010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2779)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2779
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57146"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..563
                     /locus_tag="VD968_10890"
     CDS             <1..563
                     /locus_tag="VD968_10890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14936.1"
                     /translation="RFDLSPERLIELKKNGVSERVILAMLAHEGAQGAAAEDWGDDEG
                     FFTDAGAAPGRSPNSGGTGIFGSSGGSRGRERSRGGSGSADTETQTTGTATVRILKPQ
                     AEAGGSPAKLERTPTLTNDSVVELVEAGFSEGTIIRRIEQSPVEFDLSAERLAELRKR
                     RVTEPVITAMRAAMGEGAEQPSRPED"
     gene            567..1679
                     /locus_tag="VD968_10895"
     CDS             567..1679
                     /locus_tag="VD968_10895"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE14937.1"
                     /translation="MPSTCERGAVKSGLTRAALAFSLLCAALLTGLPAAATQERVRPR
                     RASQTQETKPAQGTAETDVDEDEVVRINSSEVLLPVTVRDAGGQLVTGLKREDFRVLE
                     EGKEQPLSDLALRQVPVDVALLVDSSSSVAASFEDFRRAADEFAGRLTPEDRFSLVKF
                     DDRVELLLDWTRSRLQLRRALRRLSTGVFTRFNDALLLTAREQFGARQRRRALVVLSD
                     GIDSGRGASTSEAALRAVLETQVTVYVIANTEIERARKQSELDNLLAGSDSSVRFNEL
                     RIGDLREALRVLDASERALERLTNSTGGRLYKPRDFASLDRVYGEIAEELRSQYALYY
                     TPTDHARDGRFRRVRVETPGRPYQVSTRVGYFAPRS"
     gene            2150..>2779
                     /locus_tag="VD968_10900"
     CDS             2150..>2779
                     /locus_tag="VD968_10900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14938.1"
                     /translation="MKPIKHVEKGLTAVAGGLFNTVQFFNQYRPNESFTPKWSDKPLL
                     KSWQKSKPPLGFPRTTDSLCPKCVIEARAKILSAPEIDPSVLVNEKVGEIKAQIIERD
                     GQIWMVKDCPVHGHFEDIMAIDSAFLKHIESMFPGRDINAHNDKGLHDHGSSSIKFGR
                     GSVLTIDLTNRCNMMCDPCFMDANQVGFVHELSFDEVKDILDKAISIKPR"
BASE COUNT          514 a          941 c          852 g          472 t
ORIGIN      
        1 cgcgcttcga cctctcgccc gaacgactga ttgagctgaa gaagaacggc gtgagcgagc
       61 gagtcatact cgccatgctc gcgcacgagg gcgcgcaggg cgcagccgcc gaagactggg
      121 gcgacgatga aggcttcttc acggacgcgg gcgccgcgcc gggccgctcg cccaattcgg
      181 gcggcactgg catcttcggc tcctcgggcg gctcgcgcgg ccgcgagcgc tcgcgcggcg
      241 gcagcggcag cgccgatacc gagacgcaga ccacgggcac agccaccgtc cgcatactca
      301 agccgcaggc cgaggccggc ggctcgcccg cgaaactcga gcgcacgccc acgctcacga
      361 acgattccgt cgtcgagttg gtcgaggccg gcttcagcga aggcacgata atccggcgga
      421 tagaacagtc gcccgtcgag ttcgacctgt cggccgagcg cctcgccgag cttcgcaagc
      481 ggcgcgtcac cgagcccgtc atcaccgcca tgcgcgccgc gatgggcgag ggcgcagagc
      541 agccctcccg gccggaggac tgagcgatgc cttcgacctg cgagcgcggg gctgtcaaga
      601 gcggattgac gagggcggcg ctcgccttct cgctcctgtg cgccgcgctt ctcacagggc
      661 tccccgcggc tgccacgcag gagcgcgtgc gcccccgccg cgcctcgcag acgcaggaga
      721 ctaaacccgc tcagggtacg gccgagacgg acgttgacga agacgaggtc gtccgaatca
      781 actcttccga agtcctcctg cccgtcacgg tgcgcgacgc gggcgggcag ctcgtcacgg
      841 gcctgaagcg agaggacttc cgcgtgctcg aagagggaaa ggagcagccc ttaagcgacc
      901 tcgcgctcag gcaggttccc gttgacgtcg cgcttctggt tgactcttcc tcttcggttg
      961 cggcgagctt cgaagacttc cgacgcgcgg cggacgagtt cgccggacgg ctcacgccgg
     1021 aagaccgatt cagcctcgtc aagttcgacg accgcgtcga gctgctcctc gactggacgc
     1081 gcagccgtct gcaactgcgc cgcgccctgc gacggctctc cacgggcgtg ttcacgcgct
     1141 tcaacgacgc actcctgctc acggcccgcg agcagttcgg cgcccggcag cggcgccgcg
     1201 ccctcgtcgt cttgagcgac ggaatagaca gcggccgcgg cgcctccacc agcgaagccg
     1261 ccctccgcgc cgtgctcgaa actcaagtca ccgtctatgt catcgccaac acggagatag
     1321 agcgcgcgcg caagcagtca gagcttgaca acctgctcgc cggctccgac tcctccgtgc
     1381 gcttcaacga actccggatc ggcgacctcc gcgaggccct gcgcgtgctc gacgcgagcg
     1441 agcgcgccct tgagcgcctg accaactcga cgggcgggcg gctctacaag ccgcgcgact
     1501 tcgcctccct cgaccgcgtc tatggcgaga ttgccgagga gcttcgcagt cagtacgccc
     1561 tctactacac gccgaccgac cacgcgcgcg acggccgctt ccgccgcgtc cgcgtcgaga
     1621 ccccgggccg cccctaccag gtctcgaccc gcgtgggcta cttcgccccc cgcagctgag
     1681 cttaacggca ctgccctctg ttggtcggtt ttagtaaatt ttcctgaaaa aatcagcatg
     1741 gtgagtcaac aaggccgcgg cggctttgac tatgagccgt cactgtgtca caaggccacg
     1801 cataaaggtt agtgtaggaa aaagggctat gttgacccga atgtgaccgc tttgacttgt
     1861 cgcctctgcg cacgcttctc acctttaaaa ctaaatatat cttcacttag atgctgtacg
     1921 cccccgctgg cataggcatt gccagagtcg gggcgctgat tcatgtctaa tcagcgcaag
     1981 gttcacagga gagttgtttt ttgcgccggg ctgctctgtg ggaactcaag tggccccggc
     2041 gctttgaaat ataggccggc agcttgcttt gcgcggctga gtcgcgtaag gtgtcgagtt
     2101 ttcgtgccgg ccccgcacgg atgtcaacat ttttagagaa gggaaacaga tgaaacccat
     2161 caagcacgtc gagaagggcc tgaccgcggt ggcgggcggc ctttttaata cggttcagtt
     2221 cttcaaccag tacaggccga acgagtcttt cacgccgaag tggtcagaca agccgctttt
     2281 gaagtcgtgg cagaagtcga agccgccgct cggcttcccc cgcacgaccg acagcctctg
     2341 cccgaagtgc gtcatcgagg cgcgcgccaa gattctatcc gctcccgaga ttgaccccag
     2401 cgtgctcgtc aacgagaagg tcggcgagat taaggcgcag atcatcgagc gcgacggcca
     2461 gatttggatg gtcaaggact gccccgtgca cggccacttc gaggacatca tggcgattga
     2521 ctcggccttc ctcaagcaca tcgagtcaat gttcccgggc cgtgacatca acgcgcacaa
     2581 cgacaagggg ctgcacgacc acggctcctc ctcgatcaaa ttcggccgcg gctccgtgct
     2641 gaccatagac ctgacgaacc gctgcaacat gatgtgcgac ccgtgcttca tggacgccaa
     2701 ccaagtcggg ttcgtccacg agctctcctt cgacgaggtc aaggacattc tcgacaaggc
     2761 catctcgatt aagccgcgc
//
LOCUS       DASPKR010000403         3823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_963301, whole genome shotgun sequence.
ACCESSION   DASPKR010000403 DASPKR010000000
VERSION     DASPKR010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3823)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3823
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_963301"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1966
                     /locus_tag="VD968_10905"
     CDS             <1..1966
                     /locus_tag="VD968_10905"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HYE14939.1"
                     /translation="PARPAPTLAPPAAIPGADAPDIVRAGAVKVSPELAGRARKGRSS
                     SERARVIVQFASKPGVVLGWELRRRDVSTKRDLPRLGARVLELPVGAVERLASHREVR
                     YVSPDRETISAGHVSRTTGADDVREPAGLLNTAGLDGAGVGIAVLDSGVDTRHVAFRD
                     DNNRLRVAAARDFTGEGRTDDPHGHGTHVASIVAGNGRVSRGEYIGVAPAASLLSLRV
                     LDSRGVGRVSYILAALDWVLANRALYNIRVVNLSLGAAAVESYRDDPLCRAVRRLVDS
                     GVVVVAAAGNNGKDASGNKIYGQIHSPGIEPSAITVGSTNTFGSDYRSDDAVASFSSR
                     GPTRGGRADALSGAKQYDNLLKPDLVAPGNKIIDAAAEDNYLLASNPSLDAHVSNSDG
                     RRMMYLNGTSMSAPVVAGAAALVLQANPTLTPNLVKAVLMYTAQPLAGFNTLEQGAGQ
                     LNVEGAVRLARLVRRDLTALTPTGAPLLAASSPPAPRTTIAGETFAWAQGLVVGRGYV
                     AGAELMWKYQSLYGLGVLVSDGVLVSDGVLVSDGRLLSDGVLVSDGVLVSDGGSLGSG
                     ALFLGAGVLVSDGVLVSDNVALPDGVLVSDSVSAADRAAQALAAALNGEATGMMPAVP
                     DSEDDPLDYKELLDYNLVRRRAGARLKIKD"
     gene            2029..2955
                     /locus_tag="VD968_10910"
     CDS             2029..2955
                     /locus_tag="VD968_10910"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE14940.1"
                     /translation="MPQPRNTKDAAAAVAAPAAAAPQDGPEALIPLPLTDRDDEREVL
                     DFLAERPVHTVVMSGYIRDNGLESPFNRGTFYACRDQRGALQGVALIGHAMFIEARTE
                     AALRGFARLAQRHRSVHMLLGEQEVIQRFWCYYAEAGQATRLFCRELLYEQRWPVEAH
                     DPVEGLRRATLEDLMLVMPVHAALAYEESGVNPMETDLQGFRMRCSRRIEQGRVWVLV
                     ERGNLVFKADVIADTPDCAYIEGLYVDPPERRKGHALRCLSQMTRRLLERTKAVSALV
                     NEQNYGAQSLLVKAGFKLRGYYDTIFLESTGQ"
     gene            2981..>3823
                     /locus_tag="VD968_10915"
     CDS             2981..>3823
                     /locus_tag="VD968_10915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14941.1"
                     /translation="MNKQRFTRPYMVLVVALGAAACAYSALNLPAGRLDVRFLGLAVI
                     TVAISSRLTVMIPRISGHISVSDTFIFLTMLLYGGEPAVLLAATEALCSSLFFSRRAI
                     YIRPLTIAFNSMMMACSTFLTAAAVRLLFGDVVLLPHGEFSATFVVALCAMGLVQYVS
                     NSSLAAVHTAFKTNQPGWRTWNKYYLWASITYFAGASAAGIIAKVADVAGFYALVATT
                     PIIAIVYFTYRTYLENIEAMAAAAKAEAAAEARAESAAEQAEQARRHVEELSHYIAEQ
                     ERIRE"
BASE COUNT          591 a         1366 c         1295 g          571 t
ORIGIN      
        1 gcccgcaagg ccggccccga ctctggcccc gccggcagcc atcccgggcg cagacgctcc
       61 cgacatcgtg cgcgcgggcg cggtcaaagt ctcgcccgag cttgcgggcc gcgctcgcaa
      121 aggccgaagc tcttcggagc gcgcgcgggt gatagtccag ttcgcgtcga agccgggcgt
      181 ggtgctcggg tgggagctgc gccgccgcga tgtgagcacg aagcgcgacc tgccgcgcct
      241 cggcgcgcgg gtgctcgagc ttcccgtggg ggccgtcgag cggctcgcct cgcacaggga
      301 agtccggtac gtgtcgcccg accgcgagac catctcggcc ggccacgtct cgcgcacgac
      361 cggggccgac gacgtgcgcg agcccgcggg gctcctgaac acggcggggc tcgacggcgc
      421 gggcgtcggc atcgccgtcc tcgactccgg cgttgacacg cgccacgtgg ccttccgcga
      481 cgacaacaac aggctgcgcg tcgcggccgc gcgcgacttc acgggcgagg ggcgcaccga
      541 cgacccgcac ggccacggca cgcacgtcgc ctccatcgtc gcgggcaacg gccgcgtctc
      601 gcgcggcgag tacataggag tggcgccggc ggcgagcctc ctgagtctgc gcgtgctcga
      661 cagccgcggc gtcggccgcg tctcttacat actcgcggcg ctcgactggg ttctggcaaa
      721 ccgcgccctc tacaacatac gtgtcgtcaa cctgagcctc ggcgcagccg cggtcgagtc
      781 ctaccgcgac gacccgctct gccgcgccgt gcgccgcctg gttgactcag gcgtggtcgt
      841 cgtcgccgcc gcgggcaaca acggcaagga cgcctccggc aataaaatct acggccagat
      901 tcactcgccc ggcatcgagc cctcggccat caccgtcggc tccacgaaca ccttcggctc
      961 cgactaccgc tccgacgacg cggtcgcctc cttcagttcg cgcggcccga cgcgcggcgg
     1021 gcgcgcggac gccctgagcg gcgcgaagca gtacgacaat ctactgaagc ccgacctggt
     1081 cgcgcccggc aacaagatca tagacgccgc cgccgaggac aactacctgc tcgcctcgaa
     1141 cccctcgctc gacgcgcacg tgagcaactc cgacggccgc cggatgatgt acctgaatgg
     1201 cacctcgatg tcggcgccgg tcgtcgccgg cgcggccgcg ctcgtgctcc aagctaaccc
     1261 gacgctcacg cctaatttag ttaaggccgt gctcatgtac acggcgcagc cgctagccgg
     1321 cttcaacacg ctggagcagg gcgcggggca actgaacgtc gagggcgccg ttcggctcgc
     1381 ccggctcgtg cgccgcgacc tgactgccct gacgccgacg ggcgcgcctc tcctcgccgc
     1441 ctcctccccg cccgcgccgc gcacgaccat cgcgggcgag acgttcgcgt gggcgcaggg
     1501 gctcgtcgtt gggcgcggct acgtggccgg cgcggagttg atgtggaagt accagagcct
     1561 ctacggcctc ggggttctgg tgagcgacgg cgtgttagtt agcgacggcg tgttggtcag
     1621 cgacggccgg ctgctttcgg acggagtgct cgtgagtgac ggcgtgctcg tgagcgacgg
     1681 cgggtcgctc gggagcggcg ccctcttcct cggcgcgggc gtgctcgtga gcgacggcgt
     1741 gctggtcagc gacaacgtgg cgctgcccga cggcgtgtta gttagcgact cggtgtccgc
     1801 cgccgacagg gccgcgcagg ctcttgcggc cgcactgaac ggcgaggcta cgggcatgat
     1861 gcccgccgtg cccgactcgg aagacgaccc cctcgattac aaggagctgc tggactacaa
     1921 cctcgtgcgc aggagggcgg gcgcccgcct gaagattaaa gactgaaggg cgccgccctc
     1981 gcggctcttg aattgacgcg cacgcgcatc atcagaagga gtgaactgat gccccagccg
     2041 agaaacacga aggacgccgc cgcggccgtc gccgcgcccg ccgcggccgc accccaggac
     2101 ggccccgagg cgctcatacc gctgcccctg acggacaggg acgacgagcg cgaggtgctc
     2161 gacttcctcg ccgagcgccc cgtgcacacc gtggtgatga gcggctacat acgcgacaac
     2221 gggctcgaaa gccccttcaa ccgcggcacg ttctacgcct gccgcgacca gcgcggggcg
     2281 cttcagggag tggccctgat aggccacgcg atgttcatcg aggcgaggac ggaggcggcc
     2341 ctgcgcggct tcgcgcggct ggcgcagcgc caccgctccg tgcacatgct gctcggcgag
     2401 caggaggtca tacagcgctt ctggtgctac tacgccgaag cggggcaggc cacgcgcctc
     2461 ttctgccgcg agctgctcta cgagcagcgc tggccggtcg aggcgcacga tcccgtcgag
     2521 gggctccggc gggcgacgct cgaagacttg atgctcgtga tgcccgtcca cgccgcgctc
     2581 gcctacgagg agagcggcgt gaacccgatg gagacagacc tccagggctt ccgcatgcgt
     2641 tgctcgcgcc gcatcgagca ggggcgcgtc tgggttctgg tcgagcgcgg caacctggtg
     2701 tttaaggccg acgtgatagc cgacacgccc gactgcgctt acatcgaggg gctctacgtt
     2761 gacccgccgg agcggcgcaa gggccacgcg ctacgctgcc tctcgcagat gacgcgcagg
     2821 ctcctcgagc gcacgaaggc cgtaagcgca ctcgtcaacg agcagaacta cggcgcgcag
     2881 tcgctcctcg tcaaggcggg cttcaagctg cgcggctact acgacaccat cttcctcgaa
     2941 agcacagggc agtagtcagt cggccggacg gagtgagcgg atgaacaaac agaggtttac
     3001 gcgcccgtac atggttctgg tcgtcgcgct cggcgcggcc gcgtgcgcct actcggcgct
     3061 gaacctgccc gccgggcggc tcgacgtgag gttcctgggg ctcgcggtca tcacggtcgc
     3121 gataagctcg cggctgaccg tgatgatacc gcgcataagc ggccacatat cggtctcgga
     3181 caccttcatc ttcctgacga tgctgctata cggcggcgag ccggccgtcc tgctcgccgc
     3241 gaccgaggcg ctctgctcgt cgctcttctt cagccgccgc gccatctaca tacgcccgct
     3301 caccatcgcc ttcaactcga tgatgatggc ctgctcgacg ttcctgacgg ccgccgccgt
     3361 gcggctcctc ttcggcgacg tggtgctctt gccgcacggc gagttctccg ccacgttcgt
     3421 cgtcgcgctg tgcgcgatgg ggctcgtgca gtacgtctcg aactcgtcgc tcgccgccgt
     3481 gcacacggcg ttcaagacga accagcccgg ctggcgcacc tggaacaagt attacctctg
     3541 ggcctcgata acctacttcg cgggcgcctc ggccgcaggc atcatcgcga aggtggcgga
     3601 cgtggccggc ttctacgcgc tcgtcgccac caccccgata atcgcaatcg tctatttcac
     3661 ctaccgcaca tacctcgaga acatcgaggc gatggcggcg gccgcgaagg ccgaggccgc
     3721 cgcagaggcc cgcgcagagt cggcggcgga gcaggcggag caggcgcggc gccacgtcga
     3781 ggagctgtcg cactacatag ccgagcagga gcgcatacgc gag
//
LOCUS       DASPKR010000404         3167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_834194, whole genome shotgun sequence.
ACCESSION   DASPKR010000404 DASPKR010000000
VERSION     DASPKR010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3167)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3167
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_834194"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            527..985
                     /locus_tag="VD968_10920"
     CDS             527..985
                     /locus_tag="VD968_10920"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HYE14942.1"
                     /translation="MQKELKQTKPFTSLEEEVLLNLARTAEHVSTHFAGVLKSADLTP
                     TQYNALRILRGAGEEGLTCGEIGGRMVTRESDVTRLLDRLEKRGLITRERPETNRRVV
                     ITRITDVGLGLLAELDGPVQEANRAAAGHLGRTRLKALNELLEELRGNGA"
     gene            1043..1867
                     /locus_tag="VD968_10925"
     CDS             1043..1867
                     /locus_tag="VD968_10925"
                     /EC_number="1.13.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class III extradiol ring-cleavage dioxygenase"
                     /protein_id="HYE14943.1"
                     /translation="MENTARRLPTYFISHGGGPWPWLKEQMPGMFDNLEASLSDMPRQ
                     VGTTPKAVLMVSGHWEERDFTVMSAPRPPMVYDYSGFPAFTYQIKYPAPGSPEVATRV
                     QELLRGAGFAAPADDRRGFDHGTFAPLKAIYPEADVPVLQLSIRSDYDVDAHLAVGRA
                     LAPLRDEGVLIVGSGLSYHNLRRFGAAGVDPSREFDAWLTGAVCRSVGGERNALLRGW
                     TAAPSARLAHPDEDHLIPLMVAVGAAEGEAGETVYHEDSFAGSLTVSSYRFGRGDG"
     gene            1899..2321
                     /locus_tag="VD968_10930"
     CDS             1899..2321
                     /locus_tag="VD968_10930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HYE14944.1"
                     /translation="MANLDSFQSKWGPRLLSVLRIVAGFLLMQHGMQKLLGLPAPMPT
                     GTVPLLSLFGFVGVLELGGGLLLLLGLFTRPVAFILSGLMAAAYFMAHAPQGFWPLLN
                     QGELAALYSFVFLYLAVAGGGPWALDRLLRRGRAAERA"
     gene            2457..>3167
                     /locus_tag="VD968_10935"
     CDS             2457..>3167
                     /locus_tag="VD968_10935"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE14945.1"
                     /translation="MIAITGATGQLGRLVVEKLKDKISASDIVALARSPQKAADLGVA
                     AREADYDRPETLGRALEGIETLLLISSNEVGKRAAQHHAVIEAAKKAGVKRVVYTSLL
                     HADTTPLSLADEHRQTEAELKASGIAYTILRDGWYTENYIGSIPGALAVGAFVGSAGE
                     GRISSATRADFADAAVAVLTTEGHEGQTYELAGDEAWTLSDLAAEVSRQTGREIPYRD
                     LPEAEYADALKGFGMPEGF"
BASE COUNT          563 a         1018 c         1084 g          502 t
ORIGIN      
        1 cgcggaagct ggcgggcatc ctgttcgcgc tctggcgcga cgggacggag ttcgatccgg
       61 ggcacagcat ggggcacagc atggcgacta ctggatcata gctcgcgcgt gagtgcacgt
      121 cgcccggatc agcgagttca acagcaaggg ccggtgagcg cggcataacg tctggccgcc
      181 cggagagccg ctaaaggaat agcgccgccc gcccgtcgaa tccgaagatg cgccggcgtc
      241 agagatgccg atctagagcg cggacagaga gatgagtgtg aacttcgctg aggctggagc
      301 ggtgtgcctc agggcaaggc ggtagaagaa acacttgacg tggggcaccg cttcacagag
      361 acgttatgat acaccaatta ttaccgagcg gctgctccta tttctctacc tctacggcag
      421 cgccaaggct acccaaggtc ttcacagaag cctttcctac aatattaaac atttgccctt
      481 gacaacattc gttataacaa ctatacttct tcccgtggtg acgaagttgc aaaaagagct
      541 gaagcagacg aagcccttca cgagcttgga ggaggaagtc ctcctcaacc tcgcgcgcac
      601 ggccgagcac gtgagcacgc acttcgccgg ggtcctgaag agcgccgacc tgaccccgac
      661 gcagtacaac gccctgcgga tcttgcgcgg cgccggcgag gaggggctta cctgcgggga
      721 gatcggcggg cggatggtga cgcgcgaatc cgacgtcacg cgcctgctcg accgcctcga
      781 gaagaggggg ctcatcacgc gcgagcgccc ggagacgaac cggcgcgtcg tcatcacgag
      841 gatcacggac gtggggctcg gcctgctcgc ggaactcgac ggccccgtgc aggaggccaa
      901 ccgagcggcg gcaggccacc tcggccgtac gcggctgaag gcgctcaacg agctgctcga
      961 ggaactgcgg ggcaacggcg cctaattttt ttgccctaac agttgttata acgaacttag
     1021 gtataacaaa ggcggtacgg tgatggaaaa cacagccagg cgactcccga cctacttcat
     1081 ctcgcacggc ggcggcccct ggccgtggct caaagaacag atgccgggca tgttcgacaa
     1141 cctcgaggcc tcgctcagtg acatgccccg ccaggtgggc acgaccccga aggccgtgct
     1201 gatggtctcg ggccactggg aggagcgcga cttcacggtg atgtcggccc cccggccgcc
     1261 gatggtctac gactactcgg gcttccccgc gttcacctac cagatcaaat acccggcgcc
     1321 gggctcgccc gaggtcgcca ctcgcgtgca ggagctgctg cgcggcgcgg gcttcgcggc
     1381 cccggccgac gaccggcgcg gcttcgacca cggcacgttc gcgccgctca aggccatcta
     1441 ccccgaggcc gacgtgccag tgcttcagct ctccatcagg agcgactacg acgtggacgc
     1501 ccacctcgcc gtcgggcgcg cgctcgcgcc cttgagggac gagggcgtgc tcatcgtcgg
     1561 gagcggcctg agctaccaca acctgcggag gttcggcgcc gcgggcgtgg acccttcgcg
     1621 cgagttcgac gcctggctga ccggggcggt ctgccggtcg gtcggcgggg agaggaacgc
     1681 gttgctccgg ggctggacgg cggccccttc ggcgcggctg gcgcaccccg atgaggacca
     1741 cctgatcccg ctgatggtgg cggtcggcgc cgccgagggg gaggcgggcg agaccgtcta
     1801 ccacgaggac tctttcgccg gctccctgac ggtctcaagc taccgcttcg gtaggggcga
     1861 cgggtgacgg acattttcta acctgaagga gaatcattat ggcaaacctg gattcgttcc
     1921 aatcgaagtg ggggccgcgg ctcctgagcg tcctgcggat agtggcgggc tttcttctca
     1981 tgcagcacgg gatgcagaaa ctcctggggc tgccggcccc gatgccgacg ggcacggtcc
     2041 cgctgctctc cctgttcggc ttcgtggggg tgctggaact cgggggcgga ctgctcctgc
     2101 tgctggggct gtttacgcgc ccggtggcct tcatcctctc gggcttaatg gccgcagcct
     2161 acttcatggc gcacgcgccg caggggttct ggccgctcct gaaccagggt gagctggcgg
     2221 cgctctacag cttcgtcttc ctgtacctgg cggtcgcggg cggcggcccg tgggctttag
     2281 accgcttgct gcgccgcggg cgtgcggcgg agcgcgcgta agacctcgcg ccatctcact
     2341 cattgatcaa aggtagacac cgtctggtgg aagcatcggc cccacgccga tggactgcgc
     2401 ggccctcggt cgacgcttgg agccggcacc cggcaggtaa ggaaaggaca ggagacatga
     2461 tcgcaatcac cggagccacg gggcaactcg gccgcctcgt cgtcgagaag ctcaaggaca
     2521 agatatccgc ctctgacatc gtcgcgcttg cgcgttcgcc gcagaaggcg gcggacctgg
     2581 gcgtcgcggc gcgcgaggcc gactacgaca ggcccgagac gctggggcgt gccctcgaag
     2641 gcatcgagac gctgctgcta atctcctcga acgaggtggg caagcgggcc gcgcagcatc
     2701 acgccgtcat cgaggcggcg aagaaggcgg gcgtcaagag ggtcgtctac actagcctgc
     2761 tccacgcgga cactacgccg ctgagcctcg ccgacgagca ccgccagacg gaggccgagc
     2821 tgaaggcttc gggcatcgcc tacaccatcc tgcgagacgg ctggtacacg gagaattaca
     2881 tcggctcgat tccgggtgcg ctcgccgtcg gagcgttcgt gggcagcgcg ggcgaaggca
     2941 ggatctcgtc ggcgacgcgc gccgacttcg cggacgcggc ggtggccgtg ctgacgaccg
     3001 aagggcacga gggccagacc tacgaactgg ccggcgacga ggcatggacg ctctccgacc
     3061 tggcggccga ggtctcccgg cagaccggca gggagattcc ctaccgtgac ctgcccgagg
     3121 cggagtacgc ggacgcgctg aaagggttcg gaatgcccga agggttc
//
LOCUS       DASPKR010000405         2075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1481654, whole genome shotgun sequence.
ACCESSION   DASPKR010000405 DASPKR010000000
VERSION     DASPKR010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1481654"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..884)
                     /locus_tag="VD968_10940"
     CDS             complement(78..884)
                     /locus_tag="VD968_10940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14946.1"
                     /translation="MKEKTDGFGDPAAARGCERAEDLLAHLYGEAGPAEAAAFGEHLN
                     DCVVCREELAAFRQLRSGVADWHAAVLSAAPSLDLNRALRQEPLPFAQASRATERATR
                     ERSAMAALREFFSLSPLWLRVGTVTAAVAVCALAALTLLRTEITWGADGFAFRTGVPE
                     RVVEMVKTVETPSRGGYTREQVDAIAEERARQQVAEAERRWERERQQEQLASADAPAP
                     KKGAPQLQLANAAKQRRRAPSPHVARRDARLTDDDDESLPRLSDLLSDVY"
     gene            complement(881..1465)
                     /locus_tag="VD968_10945"
     CDS             complement(881..1465)
                     /locus_tag="VD968_10945"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE14947.1"
                     /translation="MAETTDEQIVERALGGDLEAFGELVSRWERKIFALAFGILGSAE
                     EARDAAQETFISAYRNLRGFRGEAKVSSWLHRIAVNQCITRRRRARVRAETGIDDAAE
                     VSGERFMAAPEHASPAQATERAERTEAVRRAVASLPSELREVVVLKEFEGMTFQEISD
                     ALQVPLSTVKTRLYTALRQLRMRLERFQLEVAPR"
     gene            1743..>2075
                     /locus_tag="VD968_10950"
     CDS             1743..>2075
                     /locus_tag="VD968_10950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14948.1"
                     /translation="MFDSLPRIRLLYIVLGTLLVVGLIPLGMAGWMLSGRSATELRSV
                     EGRYQAQLVHDKARQIELYGQRYREVVTGLARAFELTGGVGVLGAQGSDARLQKAVED
                     DRNLNALAI"
BASE COUNT          348 a          698 c          689 g          340 t
ORIGIN      
        1 agggcgggcg tcgcgaagac ggaaagcctg cccctgttcg gtgtcgcgtc ggtcgttagc
       61 attcgaagac ctcgaaatca gtaaacgtcg ctgagaaggt cagagaggcg cggtaggctc
      121 tcgtcgtcat cgtccgtgag ccgcgcgtcg cggcgtgcga cgtgcggcga gggcgcgcgc
      181 ctgcgctgct tagcggcgtt cgcgagttga agctgcggcg cacccttctt aggcgcgggc
      241 gcgtcggcgg aggccagctg ctcctgctgc cgctcccgtt cccagcgtct ctcggcctca
      301 gccacttgct ggcgcgcgcg ctcctcggcg atggcgtcaa cctgctcgcg cgtatagccg
      361 ccccgcgaag gcgtctcgac ggtcttgacc atttcgacga cgcgctcggg gacgcccgtg
      421 cggaaggcga agccgtcagc gccccatgtg atttccgtcc ggaggagcgt gagcgcggcg
      481 agcgcacaga cggcgacggc cgccgtgacc gtgccgactc gcagccagag cggcgagagc
      541 gagaagaact cgcgcagggc cgccatagcc gagcgctcgc gagtcgcacg ctccgttgcc
      601 cgcgaagcct gagcgaaggg aagcggctcc tgccgtagag cgcggttcag gtcgagcgaa
      661 ggcgcggcgc tcaacactgc cgcgtgccag tcggcaacgc cggagcgcaa ctgccggaag
      721 gctgcaagct cttcgcggca gacgacgcag tcgttcaggt gctcgccgaa ggctgcggcc
      781 tccgcggggc cggcctcgcc gtagaggtgc gccagcaaat cttctgcgcg ctcgcagccg
      841 cgcgcggccg cggggtctcc aaagccgtcc gtcttttctt tcatcgcggg gccacctcca
      901 actggaacct ctctaaacgc atacgcaact gccggagcgc cgtgtatagc cgcgtcttta
      961 ccgtgctcaa ggggacttgg agcgcgtcgg aaatctcctg aaacgtcatc ccctcgaact
     1021 ccttgagcac gactacctcg cgtagctccg acgggagcga ggcgacggcg cgcctgacgg
     1081 cctcagtccg ctcggcgcgc tcggtcgctt gggcgggcga cgcatgttca ggcgcggcca
     1141 tgaagcgctc gcccgatacc tcagcggcgt cgtcaatccc tgtctcggca cgcacgcggg
     1201 cgcggcgccg gcgcgtgatg cactggttga ccgcgatcct gtgaagccat gaggagactt
     1261 tggcctcgcc gcggaagccg cgcaggttgc ggtaggcgga gatgaaggtc tcctgcgcgg
     1321 cgtcgcgggc ctcttcggcg ctcccgagaa tgccgaaggc gagcgcgaaa atcttgcgct
     1381 cccagcgact tacaagctcg ccgaaggctt cgaggtcgcc gcccagggcg cgctcaacaa
     1441 tctgctcgtc ggtcgtctcc gccaccgcct ctccgaactc acgcgcgaaa aatcgcgccc
     1501 cgcgcgccga cttgccctcc gtgccttaag acgcgccgcc ggcccccgcg gtctgcaaaa
     1561 gttaaggtca ttttgcctaa agaaatcaac gagttaaaaa tgggccaaac tattgacagc
     1621 ccgcgccgcc cgcacgtagg atgaaaaaga ggccggcttt tcggtgacga aggccgcgcc
     1681 cactcgatta aagcaaaacc cgccgcgatt ttactcccgt tcgaccgtta aacttccctt
     1741 aaatgttcga cagcttaccg cgaatacggc tcctctacat cgttctgggg acgctgctgg
     1801 tggtcgggct catcccgctt gggatggccg gctggatgct ctcgggccgc agcgcgacag
     1861 agcttcgttc ggtcgagggc cgctaccagg cccaactcgt ccacgacaag gcgcggcaga
     1921 tagagcttta cgggcagcga taccgcgaag tcgtgacggg ccttgcgcgc gccttcgagc
     1981 tgacgggcgg cgtcggcgtg ctcggcgcgc aggggagcga cgcgcgcttg cagaaggcgg
     2041 tcgaggacga caggaacctg aacgctctcg ccatc
//
LOCUS       DASPKR010000406         4740 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_58223, whole genome shotgun sequence.
ACCESSION   DASPKR010000406 DASPKR010000000
VERSION     DASPKR010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4740)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4740
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58223"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..546
                     /locus_tag="VD968_10955"
     CDS             <1..546
                     /locus_tag="VD968_10955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14949.1"
                     /translation="DRGEVTLDGLVKYLQERVPKQVQIDLGAGKAQKPFAVIEGYKAD
                     ELVLSVAEAGGRGLSAAPKDDEPEQTEPQQATPANASPDKGREASGPLKLEGTAWEGY
                     SNDSGPFTVEFLPEGKLRYTHLFTGRATGGTWKQLGEFVQVSLGGYSNFNGRLEGGAL
                     KGEGSNAEGVKWKWELKQKEK"
     gene            complement(626..1276)
                     /locus_tag="VD968_10960"
     CDS             complement(626..1276)
                     /locus_tag="VD968_10960"
                     /inference="COORDINATES: protein motif:HMM:NF005012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HYE14950.1"
                     /translation="MAEHPEGIVLTTVDSIFNSLRRKVAAPVMGAKPVRELVNWGRKS
                     ALWPMTFGLACCAIEMIAAGSSRFDIDRFGAGVFRPSPRQSDLIIVAGTVTLKMGPVV
                     RRVYDQMPEPKWAIAMGACASTGGPFDSYSTMQGVDRVIPVDVYIPGCPPRPEALLYG
                     LMCLQDIIMREAPAAYIFESDGAVHRRRYLEGDDEDLAEVSPLDAEAAEAVAEIKG"
     gene            complement(1307..1750)
                     /locus_tag="VD968_10965"
     CDS             complement(1307..1750)
                     /locus_tag="VD968_10965"
                     /inference="COORDINATES: protein motif:HMM:NF012717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HYE14951.1"
                     /translation="MLSAFLLQASADAAGAASAKAGLGGPVAAYWPVMVFFAVAVVFP
                     VLPVVLGRFVRPMLYAKAKMRPYECGIDPTTEAHDRFTVRYYIVAMLFLIFDVETIFL
                     LPWAIIFMGDDFSFTKFALIEMFVFIGILVVGYYYAWRKGALEWA"
     gene            complement(1864..2361)
                     /locus_tag="VD968_10970"
     CDS             complement(1864..2361)
                     /locus_tag="VD968_10970"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MogA/MoaB family molybdenum cofactor
                     biosynthesis protein"
                     /protein_id="HYE14952.1"
                     /translation="MEILLRAAVITVSDRCARGERADESGEALAGLLVGAGAEIVARE
                     VLPDEEGPLSAALRAYADREDVNLVVTTGGTGLGPRDRTPEATRAAVEREAPGLAEAM
                     RAATLGKTPTAMLSRGVCGTRSGALIINLPGSPKGVRECFEVIRPVLAHAVALLEGRD
                     DRLHG"
     gene            2654..3595
                     /locus_tag="VD968_10975"
     CDS             2654..3595
                     /locus_tag="VD968_10975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HYE14953.1"
                     /translation="MNKFRLCMNVIAFIAFTVALSAAAQAQATRTWVSGVGDDVNPCS
                     RTAPCKTYAGAISKTARDGEISTLDPGGFGAVTITKSITINGGGTGQGYGSILAALTN
                     GVIVNITDPADTRKNVRLNWLDINGASTGLDGIRWLAGNGLHIENTHIDGFTGDGIDV
                     AFSALNNTAFSMRNVTIRNCTGAGVKMSANSTGTTGFSFERINISRCGTGIDAQNGSR
                     GTVSDSVLALNSTGVSATEGSSNTEVNLDSTSFTGHVTGISVGAGARARISRCLLTQN
                     VTSLTGPVDTGGNNTIMGNTNNNAPGVPSGGQSFPQN"
     gene            complement(3698..>4740)
                     /locus_tag="VD968_10980"
     CDS             complement(3698..>4740)
                     /locus_tag="VD968_10980"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HYE14954.1"
                     /translation="PVLIDKFLERAAEFDVDALADESACVVAGIQEHIEEAGIHSGDS
                     SCVLPPVRIADEHLETMRHYTRTLARALKVRGLINIQFAVKDDRVYVLEVNPRASRTV
                     PFVSKATGVPLARVAALVMAGRPLSGFKLPEDLTVRVNRFYVKSPVFPFKKFPGVDPI
                     LSPEMHSTGEVMGVGETFGAAFAKAMAGAGIELPAGGAAFISVNDSDKGQAALLARRL
                     VRLGFRLTATVGTAARLREVGLEVETIFKVNEGRPNIADRIRQGEIALVINTPLGQAS
                     RYDEQAIRRAALQFNVPCVTTMTGAHAAVEAIASRERAASSVITLQELHGAAEPEPPG
                     GAKDGPGLAARI"
BASE COUNT          842 a         1664 c         1515 g          719 t
ORIGIN      
        1 gaccgcggcg aggtcacgct cgacggcctc gtcaagtatt tgcaggagcg cgtgccgaag
       61 caggttcaga ttgacctcgg cgcagggaag gcgcagaagc cattcgccgt aatcgagggc
      121 tacaaggccg acgagctcgt cttgagcgtc gcggaagccg gcgggcgcgg cctctccgcc
      181 gcgccgaagg acgacgagcc cgagcagacc gagccgcagc aggcgacgcc cgcgaacgcc
      241 tcgcccgaca aggggcgcga ggcttcaggc cccttgaagc tcgaaggcac ggcgtgggag
      301 ggctactcaa acgactccgg ccccttcacc gtagagttcc tgcccgaagg caagctccgc
      361 tacacgcatc tcttcacggg ccgcgcgacc ggcggcacct ggaagcagtt gggagagttc
      421 gtgcaggtct ctctgggcgg ctattccaat ttcaacggaa ggctcgaagg cggcgccctc
      481 aagggcgagg gctcgaacgc ggagggcgtg aagtggaagt gggagcttaa gcagaaagag
      541 aagtaaggct gaggctcggg acacacgaga agggggacga gagtcacgct gcctctcgtc
      601 ccccttcttt ttctttcgcc gtcccctagc ctttaatctc cgcgacggcc tcggcggcct
      661 cggcgtcgag cggcgagact tcggcgaggt cttcgtcgtc gccttcgagg tagcggcgcc
      721 ggtggactgc gccgtccgac tcgaagatgt atgcggccgg ggcctcgcgc atgatgatgt
      781 cttgcaggca catcagcccg tagaggagcg cctcggggcg cggcgggcag cccggtatgt
      841 aaacgtcaac ggggatgacg cggtcaacgc cctgcatcgt cgagtaggag tcgaacgggc
      901 cgcccgtcga ggcgcacgcg cccatcgcta tcgcccactt cggctccggc atctggtcat
      961 agacgcggcg cacgaccggc cccatcttaa gcgtcacagt gccggcgacg attattaaat
     1021 cgctctgccg cggcgacggc cggaagacgc ccgccccgaa gcggtctatg tcgaagcgcg
     1081 acgagccggc cgctatcatc tctatcgcgc agcacgcgag cccgaacgtc atcggccata
     1141 gcgccgattt ccgcccccag ttcacaagct cgcggacggg cttcgccccc atcaccggcg
     1201 ccgccacctt gcgcctgagc gagttgaata tcgagtcaac ggtcgtgagt acgatgcctt
     1261 ccgggtgctc agccataaag aagctctcgg caatcagggg tcagcttcac gcccattcca
     1321 gcgcgccctt gcgccacgcg tagtagtagc cgacgacgag gatgcctatg aagacgaaca
     1381 tctcgatgag cgcgaactta gtgaagctga agtcgtcgcc catgaagatt atcgcccacg
     1441 gcagcaggaa gatggtctcc acgtcgaata tgaggaagag catcgcgacg atgtagtagc
     1501 gcacggtgaa gcggtcgtgc gcctccgtcg tcgggtctat gccgcactcg taggggcgca
     1561 tcttcgcctt tgcgtagagc atggggcgga cgaagcgtcc gagcacgacc ggcagcacgg
     1621 ggaagacgac cgccacggcg aagaagacca tcaccggcca gtaggcggcg acggggccgc
     1681 cgaggccggc cttcgccgac gcggcgcctg cggcgtcggc gctcgcttgc aggaggaacg
     1741 cgctaagcat tttcttcggg ctcgcctctc gcggtcgcgc gcgggcgcgt gtgggatagc
     1801 taaggcggat tctaggccgc gcccgcgcgc gctgtcaaca acaccctccg ccgcgcgccg
     1861 cctctacccg tgcagacggt cgtcgcggcc ttcgaggagc gcgacggcgt gcgccagcac
     1921 cgggcggatt acctcgaagc actcgcgcac gcccttcggc gagcccggca ggttgattat
     1981 gagcgcgccg gagcgcgtgc cgcacacccc gcgcgagagc atcgccgtag gggttttgcc
     2041 gagcgtcgcg gcgcgcatgg cttcggcgag gcccggcgcc tcgcgctcga cggcggcgcg
     2101 cgtggcctcc ggcgtcctgt cgcgcgggcc gaggcccgtc cctcccgtcg tcacgacgag
     2161 gttcacatcc tcgcgatccg cgtaagcccg cagcgccgcc gagagcggcc cctcttcgtc
     2221 cggcagaacc tcgcgcgcga cgatttcggc cccggccccg accagaagcc ccgcgagcgc
     2281 ctcgcccgac tcgtcggcgc gctcgccccg cgcgcacctg tcgctgaccg tgatgacggc
     2341 ggcgcgcaac aaaatttcca taacttcccc ctccggaact cccccgccga gcccgcgccc
     2401 ccgcgccccc agctacgtct ttacgtagta atctgcggcg cgcggcgccg cccccgatta
     2461 aaagtcaaaa aagcgcttga ctaattcccg aaataagcgt aaaagccttc ctgcctaact
     2521 cagccacggg aacttcggct ttcccgactc cgctttttgc cgcaggcaac atcctgcatc
     2581 ttgtttctgc cacgtgaagc tgcgccctcg cgctaaccca caaggttttt caatcaaaat
     2641 gggagactac caaatgaaca agtttcgcct ctgcatgaac gtcatagcgt ttattgcatt
     2701 cacggtcgct ctgtccgccg cggcgcaggc ccaggccacg cgcacgtggg tgtccggcgt
     2761 cggcgacgac gtcaacccgt gcagccgcac ggccccctgc aagacctacg ccggcgccat
     2821 ctccaagacg gcgcgcgacg gtgagataag cacgctcgac ccgggcggct tcggcgccgt
     2881 caccatcacg aagtccatca cgattaacgg cggcgggacg ggccagggct acggctccat
     2941 cctcgcggcc ctgacgaacg gcgtcatcgt caacatcacg gaccccgccg acacgcgcaa
     3001 gaacgtgcgc ctcaactggc tcgacatcaa cggcgcgagc accggcctgg acggcatacg
     3061 ctggctcgcc ggcaacgggc tccacatcga gaacacccac attgacggct tcaccggcga
     3121 cggcattgac gtggccttca gcgccctaaa caacacggcc ttctcgatga ggaatgtgac
     3181 gatcaggaac tgcaccggcg ccggcgtcaa gatgagcgcc aactctacgg ggacgaccgg
     3241 cttctcgttc gagcgcatca acatcagccg ctgcggcacc ggcatagacg cccagaacgg
     3301 ctcgcgcggc accgtcagcg acagcgtgct cgcgctcaac tccaccggcg tctccgccac
     3361 cgagggctcc agcaacacgg aagtcaacct cgacagcacg tccttcaccg gccacgtgac
     3421 cggcataagc gtcggagcgg gggctagggc gcgcatctcg cgctgcctcc tcactcagaa
     3481 cgtgacgtcg ctcaccggcc ccgtggacac cggcggcaac aacaccatca tggggaacac
     3541 gaacaacaac gctccgggcg tcccgagcgg cggccagtcg ttcccgcaga actaacgcgc
     3601 acgagggcgc tcgaccgggc gccacgacgc aaaaccgatt cccctcccgg ccgcgcagcc
     3661 cgcggccggg aggggaattt ttatccccct gcgggcttca aatccgagcg gcgaggccgg
     3721 ggccgtcctt agccccgccc ggcggctcgg gctcggcggc gccgtgcagt tcctgcaagg
     3781 tgatgaccga ggaggccgcg cgctcgcgcg acgcgatggc ctcgacggcg gcgtgcgcgc
     3841 ccgtcatcgt cgtcacgcac ggcacgttga actgcaaggc ggcgcgtcgt atcgcctgct
     3901 cgtcgtagcg cgacgcctgc ccgagcggcg tgtttatgac gagcgctatc tcgccctgcc
     3961 ggattctgtc ggcgatgttc gggcgcccct cgttcacctt gaagatggtc tcgacttcga
     4021 gcccgacctc gcgcagccgc gccgccgtcc ccacagtcgc cgtcagcctg aaccccagcc
     4081 gcacgagcct gcgcgcgagc agggccgcct gccccttgtc cgagtcgttg acggagatga
     4141 aggccgcgcc cccggcgggc agctctatcc ccgcgccggc catcgccttc gcgaaggccg
     4201 cgccgaacgt ctcgccgacg cccatcacct cgcccgtcga gtgcatctcg gggctcagta
     4261 tggggtcaac gccggggaac ttcttgaacg ggaagacggg cgacttgacg tagaagcggt
     4321 tcacgcggac ggtcaagtcc tcggggagct tgaagcccga gagcgggcgg cccgccatca
     4381 cgagcgcagc cacgcgcgcg agcggcaccc ccgtcgcctt cgacacgaaa ggaacggtgc
     4441 gcgacgcgcg agggttcact tcgagcacat agacgcggtc gtccttcacg gcgaactgta
     4501 tgttgatgag gccgcgaacc ttgagcgcgc gcgcgagcgt ccgcgtgtag tggcgcatgg
     4561 tctccaggtg ctcgtcggct atgcgcaccg gcggcagcac gcacgaagag tcgccggaat
     4621 gaatgccggc ctcttcgatg tgctcctgta tgcctgcgac gacgcaggcc gactcgtcgg
     4681 cgagcgcgtc cacgtcgaac tcggcggcgc gctccaagaa cttgtcaatc agcacgggct
//
LOCUS       DASPKR010000407         3477 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_964300, whole genome shotgun sequence.
ACCESSION   DASPKR010000407 DASPKR010000000
VERSION     DASPKR010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3477)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3477
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_964300"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1468)
                     /gene="mutS"
                     /locus_tag="VD968_10985"
     CDS             complement(<1..1468)
                     /gene="mutS"
                     /locus_tag="VD968_10985"
                     /inference="COORDINATES: protein motif:HMM:NF003810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HYE14955.1"
                     /translation="MTNSTPLRRQYLEVKRRHPDALLLFRIGDFYEAFDDDARVLARE
                     LDIVLTSKPMGRNVRVPLAGVPHHSLERHLATLIARGHRVAICEQLTTSPVKGESAGR
                     GLIERDVVRVVTPGTVIEPGLLQSKVNNYIAAFVTDGRRAGIAYADVTTGDFAATELD
                     ARGAPAELHRVAPSELLVPDNLPPSDASGLPGFVTRRRAAGFDPARARRTLQQHFSAR
                     TLAPFGLARWPLATSAAAAIVEYLRETQSSVAEQLTRLTSYNPEAHMVLDEQTVRSLE
                     IFESAGGAPSLLSTLDETRTAMGGRLLRRWLRQPLLDIAEIARRQEHVAWFAAHEKER
                     GELAAALETVHDLERLSGRARAGVATPSEMLALRQSLETVPRIRAVLERDPARFGKAL
                     SALPACESVVALIRSALNDELPSRAESARVIRDGFSEELDGLRALLRNGKTFLAEMEQ
                     RERARTGIKSLRVGYNKVFGYFIEVTKPNLRLVPADYTR"
     gene            complement(1465..2193)
                     /locus_tag="VD968_10990"
     CDS             complement(1465..2193)
                     /locus_tag="VD968_10990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14956.1"
                     /translation="MAYPSVERIELPILQELAATGGVEEVRFLYDRLVAYFPQLAEGD
                     VRALANGHRRQWRRLVQRAGRALSDRREVVRVRGRWALTEKGRRRAAEEATRFTAPAP
                     GEGEPAPESLTHADVQQMLVDIGRVMGHFAEVEHDYYDVVWREGEASPRLSHVFEVQH
                     KGNVDAALAKLKRAYDAQRSRPFLVVASERDTNRAERQLSLARTGPFHEIGRVTTILS
                     FEQLRRLHRALTSVEDILAQIFER"
     gene            2454..>3477
                     /locus_tag="VD968_10995"
     CDS             2454..>3477
                     /locus_tag="VD968_10995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14957.1"
                     /translation="MKIYPKQRTALPLAAAALFILTAHLEAFAVPTWTAHKPNPSPPI
                     RDGAQIAYDAATNRVIAFLPGNPAVPPNLSSEVWVLRHANGMGGTMFWTKLNPTGTAP
                     SLIMGGSVAYDPTTNKLIVYGGCYANCSPSQSQVFVLTNANGSGGTPAWSQLSVTNPQ
                     DRVFHSTVYDAVNNLLISFGGQHAFFGTDENDTRVLSNANGAASPSTWSTLATAGGPP
                     PARGSHTIVYDSANNRLILYAGSNGISCCYNIVPFGDVWVLSNANGIGGTPTWSQLLP
                     TGTPPPARDLHTAVYLPAKNKMYVFGGQTWSNATQSATLRGERHRARRRDSAPDGRRV
                     RHEPARP"
BASE COUNT          567 a         1170 c         1206 g          534 t
ORIGIN      
        1 tgcgcgtgta gtccgccggg actaagcgca ggttcggctt tgtgacctca atgaagtagc
       61 cgaagacctt gttgtagccg acgcgcaggc tcttgatgcc cgttcgggcg cgctcgcgct
      121 gctccatctc agcgaggaaa gtcttgccgt tacgaaggag cgcgcgcagc ccgtcgagct
      181 cttccgagaa gccgtcgcgt atgacgcggg ccgactccgc acgcgagggc agctcgtcgt
      241 ttaaggccga gcgtatgagc gcgaccacag actcgcacgc cggcagcgcc gagagggcct
      301 taccgaagcg tgcggggtcg cgctcaagca cagctcgtat gcgcgggacg gtctcgaggc
      361 tctgcctgag agccagcatc tcggacggcg tcgccacccc cgcgcgggct cggcccgaga
      421 ggcgctcgag atcgtggacg gtctcaagcg cggccgccag ttcgcccctc tctttctcgt
      481 gagccgcgaa ccacgcgacg tgctcctgcc tgcgcgcaat ctcggcgatg tcgagcaggg
      541 gctgacgcag ccagcggcgg aggagccggc cgcccatcgc cgtgcgcgtc tcgtccagcg
      601 tcgagaggag cgacggcgcg ccgcccgcgc tctcgaaaat ttcgaggctg cgcacggtct
      661 gctcgtcgag aaccatgtgc gcctccgggt tgtagctcgt cagccgcgtg agctgttccg
      721 caacggagga ttgcgtctcg cgcaggtact cgacgatggc ggcggcggcc gacgtagcca
      781 ggggccagcg cgcgaggccg aacggcgcga gcgtgcgcgc ggagaagtgc tgctgcaacg
      841 tgcgccgcgc gcgcgcaggg tcgaagcctg cggcccggcg gcgggtgacg aagccgggga
      901 ggcccgaggc gtcggagggc ggaaggttgt cggggacgag aagctcggag ggcgcgacac
      961 ggtgaagctc ggccggcgcg ccgcgcgcgt cgagctcggt cgcggcgaag tcgcccgtcg
     1021 tcacgtcggc gtaggctatg ccggcgcgtc ggccgtcggt gacgaaggcc gcgatgtagt
     1081 tgttgacttt gctctgaaga agccccggct cgatgacggt gccgggcgtg acgacgcgca
     1141 ccacgtctcg ctctatgagg ccgcggcccg cagactcgcc ttttacgggc gaggtcgtca
     1201 actgctcgca gattgctacg cggtggccgc gcgcgatgag cgtggcgagg tggcgctcaa
     1261 ggctgtggtg cgggactcct gcgagcggga ctcggacgtt ccggcccatc ggcttcgacg
     1321 tgagcacgat gtctagctct ctggcgagca cgcgcgcgtc gtcgtcgaaa gcctcgtaga
     1381 agtcgccgat gcggaagagc agcagagcgt cggggtggcg gcgcttgact tcaaggtact
     1441 ggcggcgcag gggcgtcgag ttcgtcatcg ctcgaagatt tgggccagta tgtcctcgac
     1501 cgacgtgagg gcgcggtgga gccgccggag ctgctcgaag ctaaggatgg tggtgacgcg
     1561 gcctatctcg tggaaggggc ccgtgcgcgc caggctcaac tgccgctcgg cgcggttcgt
     1621 gtcgcgctcg ctggcgacga cgaggaaggg gcgcgagcgc tgcgcgtcgt aggcgcgctt
     1681 gagcttggcg agcgctgcgt caacgttccc cttgtgctga acctcgaaga cgtggctcag
     1741 tcgcgggctc gcctcgccct cgcgccagac cacatcgtag tagtcgtgct cgacctcggc
     1801 gaagtggccc atgacgcggc cgatgtcaac gagcatctgc tgaacgtcgg cgtgcgtgag
     1861 agactcgggg gcgggctcgc cctcgccggg cgcgggcgcc gtgaaccgcg tcgcctcttc
     1921 cgcagcgcgg cggcgcccct tctcagtcag ggcccagcgg ccgcgcacgc gcacgacctc
     1981 gcgcctgtct gagagcgcgc ggccggcgcg ctgcacgagg cggcgccact gccttcggtg
     2041 gccgttcgca agcgcgcgca cgtccccctc tgcgagctgc gggaagtacg cgacgaggcg
     2101 gtcgtagagg aagcgcactt cctcgacgcc gcccgtcgcc gccagctcct gaaggatggg
     2161 cagctcgatg cgctcgacgc tagggtaagc catgcggacg aagcccggga gtagaaaagg
     2221 ttcggggtgg gcgctccctc cccgtcgcag ggcagaactt tcgaccgaaa cgttacagga
     2281 gaagcgtgcc gccaagcaag cgcccggacg gcccgcacag gcgttgactc cggctcgggc
     2341 cggttgtacc ttctgcgcga cgagccgtag gggccgacga ccacctcgcc gactgacggc
     2401 cgacgcacag acctcgcgac gaagcccctg ctctttgaaa ggaaacgccc gccatgaaaa
     2461 tctacccgaa acagaggacg gcgctgcccc tcgcggccgc cgcactgttt atccttacgg
     2521 cccatcttga agccttcgcc gtgccgacat ggacggcaca caagccgaac ccctcgccgc
     2581 cgatcaggga cggcgcccag atagcctacg acgcagccac gaacagggtg atagcgttcc
     2641 tgcccggcaa cccggccgtc ccgccgaacc tttcgtcgga agtctgggtg ctgcgccacg
     2701 ccaacggaat gggcggcacg atgttctgga ctaagctcaa cccgacgggg actgcgccct
     2761 ccttaatcat gggagggagc gtcgcctacg acccgacgac gaacaagctg atcgtgtacg
     2821 gcggctgcta cgccaactgc tcaccctctc agtcgcaagt cttcgtgctt acgaacgcca
     2881 acgggtcggg cggcaccccg gcatggtcac agctctccgt cacgaacccg caggacaggg
     2941 tctttcactc gacggtttac gacgcggtga ataacctgct gatttctttc ggcgggcaac
     3001 acgccttctt cgggactgac gagaacgaca cccgcgtgct ctcgaacgcg aacggggcgg
     3061 cgagcccttc cacgtggagc acgctggcga ccgcgggggg gccgccgccc gcccgcggct
     3121 cccacacgat cgtttacgac tcggccaaca acaggctgat actctacgcc ggctcgaacg
     3181 gcatctcttg ctgctacaac atagtcccct tcggcgacgt gtgggtgctc tctaacgcaa
     3241 acggcatcgg cggcacgccc acctggtcgc agctactccc gacggggaca ccgccgcccg
     3301 cgcgcgacct gcacacggcc gtgtatctcc ccgcgaagaa caagatgtac gtcttcggcg
     3361 ggcagacctg gtcgaacgcc acgcagtcgg cgacgctgcg cggcgaacga catagagcgc
     3421 gccgtcgaga tagcgcgccg gatggtcgcc gagttcggca tgagcccgct cggcccc
//
LOCUS       DASPKR010000408         2183 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1093765, whole genome shotgun sequence.
ACCESSION   DASPKR010000408 DASPKR010000000
VERSION     DASPKR010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1093765"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..548
                     /locus_tag="VD968_11000"
     CDS             <1..548
                     /locus_tag="VD968_11000"
                     /inference="COORDINATES: protein motif:HMM:NF014788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HYE14958.1"
                     /translation="KVIDGSRIAPGDVLLALPSAGLHTNGYSLARKLFFEVAGYKADT
                     RLAALGTTVGEALLAPHLSYLRPLEGLLDTGLIKGLAHITGGGLLENVPRILPEGTAA
                     RIERGSWPVPSVFRVMQEIGNVAEPEMYRTFNMGVGMVVVCSAQDAETVCRHFDSPGH
                     CHRIGSVVEGDRDVTLAGGAG"
     gene            557..1144
                     /gene="purN"
                     /locus_tag="VD968_11005"
     CDS             557..1144
                     /gene="purN"
                     /locus_tag="VD968_11005"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HYE14959.1"
                     /translation="MLISGRGSNMVALAEAVREGRAPGAEIVVVISDKAGAAGLDRAR
                     ELGIEALAVERRGRGREEHEREMIAALRERGVRLVCLAGYMRLLSPCFVGEFRNLILN
                     IHPSLLPAFPGLDAQRQAVEHGARVSGCTVHFVDETLDGGPIITQRVVPVEDTDTAET
                     LSERILAEEHKAYPEALALVASGRYRVVGRRVVRK"
     gene            1189..>2183
                     /gene="tyrS"
                     /locus_tag="VD968_11010"
     CDS             1189..>2183
                     /gene="tyrS"
                     /locus_tag="VD968_11010"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HYE14960.1"
                     /translation="MTTDEQLAFLRKGTVEIIREEELRAKLERSARAGRPLKVKLGAD
                     PTAPDLHLGHTVVIRRLRAFQELGHTVVFLIGDFTGMIGDPSGKSATRPQLTREEIEA
                     NAETYKAQIFKLLDPEKTVIDFNSRWMGALGADGFVRLASHVTVKQILERDDFQKRLS
                     EERPVALHELLYPLTQAYDSVALKADVELGGTDQKFNLLMGRNLQREYGQEPQTAVIT
                     PLLEGTDGVQKMSKSLGNYIGISEPPQEMFGKVMSISDDLMWRYYELLTDATAEDVKR
                     MRLSVVAGGLNPRDAKVDLAKRIITDFHSADAARAAEEEFNRVFKRKEAPDEVEER"
BASE COUNT          376 a          761 c          728 g          318 t
ORIGIN      
        1 agaaggtgat tgacgggagc cgcatcgcgc cgggcgacgt gctgctcgcg ctgccctcgg
       61 cgggcctgca cacgaacggc tactcgctcg cccgcaagct cttcttcgag gtggcgggct
      121 acaaagccga cacgcgcctc gccgcgctcg gcacgaccgt cggcgaggct ctgctcgccc
      181 cgcacctgag ctacctgcgc ccgctcgaag ggcttctcga caccggtttg attaaggggc
      241 tggcgcacat cacgggcggc gggctgcttg agaacgtccc gcgcatactg cccgaaggca
      301 cggccgcgcg aatcgagcgc ggctcgtggc ccgtcccctc ggtcttccgg gtcatgcagg
      361 agataggcaa cgtcgcggag ccggagatgt accgcacctt caacatgggg gtcggcatgg
      421 tcgtggtctg ctcggcgcag gacgccgaga cagtctgccg ccacttcgac agccccggcc
      481 actgccaccg gatcggctcg gtcgtcgagg gcgaccgcga cgtgactctc gcgggcggcg
      541 cagggtgagg gtcggcgtgc ttatctccgg gcgcgggtcg aacatggtcg cgctcgccga
      601 ggccgtgcgc gaggggcgcg cgcccggcgc ggagattgtc gtcgtcataa gcgacaaggc
      661 aggggcggcg ggcctcgacc gcgcgcgaga gttgggcatt gaggcgctcg cggtcgagcg
      721 gcgcgggcgc gggcgcgagg agcacgagcg cgagatgatc gccgccctgc gcgagcgcgg
      781 cgtccggttg gtgtgcctcg ccggctacat gcggcttctg tcgccctgct tcgtcggcga
      841 gttcagaaac ctgattctca acatacaccc gtcgctcctg ccggccttcc ccggcctcga
      901 cgcgcagcgg caggccgtcg agcacggcgc gcgcgtctcg ggctgcacag tccacttcgt
      961 tgacgagacg ctagacggcg gccccatcat cacgcagcgc gtcgtccccg tggaagacac
     1021 cgacaccgcc gagactctct cggagcgcat actcgccgag gagcacaaag cctaccccga
     1081 ggcgctcgcc ctcgtcgcct ccggccgcta ccgtgtagtc ggccgccgcg tcgtcaggaa
     1141 atagcgcgcg gcttggaact tcaaggccgg gactttaaac ttagcgccat gacgactgac
     1201 gagcagctcg ccttcctgcg caaggggacg gtggagataa tccgcgagga ggagttgcgc
     1261 gccaagctcg agcggagcgc gcgcgcaggc cgcccgctca aggtgaagct cggcgcagac
     1321 ccgaccgcgc cagacctcca cctcggccac actgtcgtca tacgccgcct ccgcgccttc
     1381 caggagctgg gccacaccgt cgtcttcctc atcggcgact tcacggggat gataggcgac
     1441 ccgtcgggca agtccgccac gcgcccgcag cttacgcgcg aggagataga ggccaacgcc
     1501 gagacctaca aggcgcagat attcaagctg ctcgaccccg agaagaccgt catagacttc
     1561 aactcgcgct ggatgggcgc gctcggcgcc gacggcttcg tgcgcctcgc ctcgcacgtc
     1621 accgtcaagc agattttaga gcgcgacgac ttccagaagc gcctcagcga agagcgcccc
     1681 gtcgcgctcc acgagctgct ctaccccctg acgcaggcct acgactccgt cgcgctcaag
     1741 gcggacgttg agctgggcgg cacagaccag aagttcaacc tcctgatggg ccgcaacctc
     1801 cagcgcgagt acgggcagga gccgcagacg gccgtcatca cgcccctgct cgaaggcacg
     1861 gacggcgtgc agaagatgtc gaagtcgctc ggcaactaca taggcataag cgagccgccg
     1921 caggagatgt tcggcaaggt gatgtccatc tcggacgatc tcatgtggcg ctactacgag
     1981 cttctgaccg acgccacggc cgaggacgta aagcgcatgc ggctctccgt ggtcgccggc
     2041 ggcctcaacc cgcgcgacgc caaggttgac ctggcaaagc gcatcatcac agacttccac
     2101 tcggccgacg ccgcccgcgc cgccgaggag gagttcaacc gcgtcttcaa gcgcaaggag
     2161 gcgccggacg aggtcgaaga gcg
//
LOCUS       DASPKR010000409         2501 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1352235, whole genome shotgun sequence.
ACCESSION   DASPKR010000409 DASPKR010000000
VERSION     DASPKR010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2501)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2501
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1352235"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..842
                     /locus_tag="VD968_11015"
     CDS             <1..842
                     /locus_tag="VD968_11015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14961.1"
                     /translation="ISSLASVCAGLLLAPCALVAPAHARAQAAGAPAQQKGGAAKAQP
                     AAEQSAPKPALSVKMSRDAPHTFTVKAKGAKLSEVAAELSKLLKTPIQLSPLLSRQPA
                     NLDFGGLNLEATVRMLAPQAYVDYVAGGDLAEAKPLAIYMQAYNERPPALTATVKGSS
                     EAILIEGDTEEGVETEEERRKKEEAEPLKVSYSNNQLSVRAKRQPLTVVLYRVASELG
                     VPFELKYETPELIDIDFSNFSVEQAVRSLSPHVRFYYRLDLQTFQLQPIRLALVPPAT
                     AKS"
     gene            885..1073
                     /locus_tag="VD968_11020"
     CDS             885..1073
                     /locus_tag="VD968_11020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14962.1"
                     /translation="MSNKTEILNAEQLTEVKAREGSTAAATGDAKKKFTEPEVSFPID
                     VLEATTFFQGTDSGVSNP"
     gene            1074..2111
                     /locus_tag="VD968_11025"
     CDS             1074..2111
                     /locus_tag="VD968_11025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14963.1"
                     /translation="MTAGVLTDPARPALASCYTVAGRFICVGAEDETWARLFGGFFAG
                     WHVSPARLGPGAAPDAYILAREGDAPRAPSAGFETFDVASGGRCHTDGETYFFEAGGS
                     VVRVAAGAAPALVEVWVGRGEADREEAALARLVFNASMAAMRRAGLFELHAGAVVEPR
                     SGAGVLFVGPSGSGKSTLTTTLASAGWRYLSDDSLLLRRCDGSVEAHALRRAFAVTAP
                     TIEASGLDRAGRMLTTRPVPFDPTKRRFEPEAVFPGGFTSACEPAALFFPAVTREASS
                     RVRPLTQAEAMARLLRMCPWACYDKPAAREHLAVLALLSGRCAAHELSAGGDLLGDAP
                     RVAELVTAHLS"
     gene            2122..>2501
                     /locus_tag="VD968_11030"
     CDS             2122..>2501
                     /locus_tag="VD968_11030"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HYE14964.1"
                     /translation="MSLSGSPRTRNYGPPRLIVELTNICNLRCSYCLRDEDALYHTPA
                     NYFPVALLSRLLAEARAAMGATQVMFTGGETTLHPRLDEIFGAVAAEGMTCSFITNGW
                     HFERVWPAVASARGAVSHVAFSLDG"
BASE COUNT          410 a          862 c          832 g          397 t
ORIGIN      
        1 ggatttcgag cctcgctagc gtgtgcgcag ggcttctgtt ggcgccgtgc gcgctcgtcg
       61 cgccggccca cgcgcgcgcc caggcggccg gcgcccccgc gcagcagaag ggcggagccg
      121 cgaaggccca gccggcggcc gaacagtctg cgccgaagcc cgcgctgagc gtcaagatga
      181 gcagggacgc accgcacacc ttcaccgtca aggcgaaggg cgcgaagctc tccgaagtgg
      241 ccgcggagct ttcaaagctc ctcaagacgc cgatccaact gagcccgctg ctcagccgtc
      301 aaccggccaa cctcgacttc ggcggcctga acctcgaagc caccgtccgc atgctcgcgc
      361 cgcaggcata cgttgactac gtggccgggg gcgacttagc cgaggccaag ccgctcgcga
      421 tctacatgca agcctacaac gagcgcccgc ccgcgctcac ggcgacggtc aagggcagct
      481 ccgaggcgat actaatcgag ggagacacgg aggagggcgt cgagaccgag gaggagcgga
      541 ggaagaagga ggaggccgag ccgctcaagg tcagctactc aaacaaccag ttgagcgtgc
      601 gcgccaagcg ccagcctctt acagtcgtac tctatcgcgt ggcgagcgag ctgggagtcc
      661 cgttcgaact gaaatacgag acgccggagc tgatagacat tgacttcagc aatttttccg
      721 tcgagcaggc cgtgcgctca ctctcgcctc acgtgcgctt ctactaccgt ctggacttgc
      781 agacgttcca gcttcagccg atacgtctgg cgctagtccc gccggctacc gcgaagtcat
      841 aggcactaaa caccaccacg ataatcacag gaggcacgta aaccttgagc aacaagaccg
      901 aaattctgaa cgccgaacag ttgaccgaag tgaaggcgcg cgagggcagc accgcggcgg
      961 cgaccggcga cgcgaagaag aagttcactg agcccgaggt gtccttcccg attgacgtgc
     1021 tcgaggccac gacgttcttc cagggcactg acagcggcgt aagcaatccg taaatgacgg
     1081 cgggagtttt aacagacccc gcccgaccgg cgctcgcgag ttgttacacg gtcgccggtc
     1141 gttttatttg cgtcggggcg gaggacgaaa cctgggcgcg gctgttcggt ggcttcttcg
     1201 cgggctggca cgtctcgccg gcgcgcctcg gccccggagc cgcgcccgac gcttacatac
     1261 tcgcccgcga gggcgacgcc ccgcgcgcgc cctcggccgg cttcgagacc ttcgatgtgg
     1321 cttcgggcgg gcgctgccac acggacggcg agacttactt cttcgaggcg ggcggctcgg
     1381 tcgtgcgcgt ggccgctggc gccgccccgg cgctcgtcga agtctgggtg gggcgcggcg
     1441 aggcggacag ggaagaggcg gcgctcgcgc gcctcgtctt taacgcctcg atggctgcga
     1501 tgcggcgcgc ggggctgttc gaacttcacg ccggcgccgt cgtcgagccc cgctcgggcg
     1561 cgggcgtgct cttcgtaggc ccctcgggga gcggcaagtc aacgcttacg acgacgctcg
     1621 cgtccgccgg ctggcgttac ctttccgacg actcgcttct gctacggcgc tgcgacggct
     1681 cggtcgaggc gcacgcgctg cgccgcgcct tcgccgtgac cgcgccgacg attgaggcga
     1741 gcggcctaga ccgcgcaggc cgcatgttga cgacacgccc cgtgcctttc gacccgacga
     1801 agaggcgctt cgagccggag gctgtcttcc ccggcggctt cacttccgcc tgcgagccgg
     1861 ccgcgctctt cttccccgcg gtcacgcggg aggcttcgag ccgcgttcgc cccctcacgc
     1921 aggccgaggc gatggcgcgg cttctgagga tgtgcccgtg ggcctgttat gataagcccg
     1981 cggcgaggga acatctggcc gtgctcgcgc ttctttccgg ccgttgcgcg gcgcacgaac
     2041 tttcggccgg cggggacttg ctcggcgacg cgccccgcgt cgccgaactg gtgacagcgc
     2101 acctgagtta gacgattctt tatgagcctt tccggttctc cccgaacgcg gaactacggg
     2161 ccgccacgtc tcatcgtaga gcttacgaac atctgcaacc tgcgttgcag ctactgcctg
     2221 cgtgacgagg acgccctcta ccacacgccc gcgaactact tccccgtggc gctgctcagc
     2281 cgcctgctcg cagaggcgcg cgccgcgatg ggcgcgacgc aggtgatgtt caccggcggc
     2341 gagaccacgc tccacccccg cctggacgaa atcttcggcg cggtcgccgc cgaggggatg
     2401 acgtgcagct tcatcaccaa cggctggcac ttcgagcgcg tatggcccgc ggtcgcgtca
     2461 gcgcgcggcg cggtgagcca cgtcgcgttc agcctcgacg g
//
LOCUS       DASPKR010000410        16126 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1482535, whole genome shotgun sequence.
ACCESSION   DASPKR010000410 DASPKR010000000
VERSION     DASPKR010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 16126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16126)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16126
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1482535"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3272)
                     /locus_tag="VD968_11035"
     CDS             complement(<1..3272)
                     /locus_tag="VD968_11035"
                     /inference="COORDINATES: protein motif:HMM:NF012618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14965.1"
                     /translation="MTTRTRPRAAALLCLILLFAADAPAQRGGARRATKPKAPAQKPA
                     APEPRLVVQLGHSSFDSGFAAFSADGRLVATGSGADQTAVIWDVASGREVRRLEGNAP
                     PDDGADYSWMSGAFSPDGRLFAVGLGPYLRVWDIESAKVLGRLSSDEFLFAPLDEARP
                     PVAFSPDGRRLVTHTPRSRITWDVATGRVLSRTDFARLGPGGRRTELEGPRADELAKS
                     LLSPDGRLRVAVKGGAIVVTDKASGAVVGRVSVGGSEAGDTLYGWALALSPDNRTLVT
                     VGTNYVGAPEATLWDVATGRALRQLEGRAEDRSHFVFTPEGGILNAAQPPDREDGAVR
                     LREMVAGREWAWAAGEGATDLQVSPDGRFVILTRGAHGEVYDAGTGARLARVEGPAEP
                     GKEHTFGWDFAGFTPDETFTFFKDKSPGGAARLVRLSTRDWKERAAPALDVIPKDVYA
                     HHAAFAMTPDTKTAAWETRRPVAGRHHDDQLVTVWRADDPTGTKTFMVDADEAFNLPS
                     DLALSPDGARILVATGNPDLFTPQAVVKVYDAREGRALFQLRSPGKRIGAVAWSPDGR
                     TLATYAPDPGDPALRLWDAATGRVLHRAKGVSEGVADLRFSPDGRLLLAHDPKGFTYL
                     FDVGTGAEVGRMLSRDEGDWVVVDPQGRFDTNNLEELKGVHWLAPDDPLKPLPLEIFM
                     REYYEPRLLARLLAGEKMNPVRSLSEVNRAQPSVRIKAFEPVEARPELVNVTVEVSKG
                     AHDLRLFREGQLVAYAPEEGGEVKTGESGRASVTFRGVRLPRNTGKREVEFTAYAFNE
                     DRVKSATARETFALPETMKPAKGRAYVVSVGVNAYENEAWDLRFAANDARRLREVVAG
                     RLAETGEYEETVSVSLVSDFETREGRKTSPRVVTESSATKANFRAVLDLLAGRKVDDE
                     VVKRIPGAEKLRAATPEDLVIISFSSHGYADEAGEFYLLPYDTGPAGEMRDALSRAVS
                     SGELSLWLRDVDAGELVLVVDACHSAASVQGEGFKPGPMGSRGMGQLSYDKGMRILAS
                     TQADDVALESRLIEQGLLTYALTRDAVERARADFRPADKSITVAEWLAYGVERVPVLH
                     EEV"
     gene            complement(3395..5767)
                     /locus_tag="VD968_11040"
     CDS             complement(3395..5767)
                     /locus_tag="VD968_11040"
                     /inference="COORDINATES: protein motif:HMM:NF024754.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HYE14966.1"
                     /translation="MEDILSSLNERQREAVTATEGPLLILAGAGSGKTRVITVRIAYL
                     IQERGVAPHNILAVTFTNKAAQEMRERVNRLLGGRRLESAPLVSTFHSLCVRMLRRDI
                     EKLEEGYTRSFTIYDQDDSVRVVKGAIKDLGYDDQRLGARQTQGAISHAKNSGLDAEQ
                     FAARVEYGDERRTAIARIFRLYEERLVNNNALDFDDLLIKAVRLLRKREDVRAHYNDR
                     FRYILVDEYQDTNALQFALINFLTQKQQNVCVVGDESQSIYRWRGADISNILNFEQQY
                     PEARVIKLEQNYRSTQNILDAADAVIKNNTERREKKLWTANPAGAPLRYYQAADAEGE
                     ARFVAAKIEEHRRAEPNLRAAVLYRTNAQSRVFEEALRRAGIPYNIVGGFSFYERAEV
                     RDIVSYLKLALNPHDSVALMRVINTPPRGLGKQTLDELDRRAKDYGVSLWETIGIVTS
                     QPDGMSPRAVSALKNFQTVISGLVALASKEAASEVVKAAILDTGYADALKAENSEEAE
                     GRLENLQELVNAAVDYDTEEGGGLRDFIDAAALVSDADQYRAEAPVTLMTMHSAKGLE
                     FPLVFVVGMEDGLFPHSRSAADPAEMEEERRLCYVAITRAERHLYVTHAMRRRVYGEE
                     LASEPSQFLNELPLDLLEDLSRGGSWLSFARSSSALEAQHAARALRGETGRTEKRYGG
                     KTYDSVDSIAEFFRQRGDQIKRNAAAANQSTQPAAPPPPKRPAAGAAPSSSSSSGAGF
                     APGTHVRHPKYGRGLVLRREGVGDSAKITVSFPGFGQKKLVEKYAGLEKA"
     gene            complement(5771..6328)
                     /locus_tag="VD968_11045"
     CDS             complement(5771..6328)
                     /locus_tag="VD968_11045"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HYE14967.1"
                     /translation="MRHGNTLEHGRAALAIVDVQESFRRAIPDFGGLASRVATVARAA
                     QILGVPVVVTEQYPKGLGRTAEEIRAALPEGFEPVEKTAFSSCGAQEFVSRLESAGAR
                     QIIICGIEAHVCVNQTTHDLLARGFQIHVLTDCVSSRAAENRQVGLDKMFRSGALPSS
                     TEMALFELLRDARHEQFKAIQKLIK"
     gene            complement(6425..8242)
                     /locus_tag="VD968_11050"
     CDS             complement(6425..8242)
                     /locus_tag="VD968_11050"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HYE14968.1"
                     /translation="MNRARTTGATFKAAARCLLLPALLAAAGPALPCLARQAGAQPGP
                     AMVGSITGRVVGEGGEPLPYAAVYVTSRGPVARAMPTATTDAEGNFRFDGLALGTYTV
                     LAVLPAYVMAPETAGPNNYYRLGENVTIRMLKGGVVTGSVVTAAGEPVVGVGVRAIRV
                     RDAEGRSLSATAPLGFSREFRTDDRGVYRIFGLAPGSYVVFAGGESQTGGFLPSAYAG
                     EAPTFYPSSTRDTAAEVSVRSGQEATGIDIRYRGEPGHRITGTVAVPQSAGQAVSVGV
                     TLMHPSSGMPVGSAWVENILGQESARPFTVAAVADGEYDLLAQLHTREGTVAASEPLR
                     VSVRGADVTGLKIQPAALASVSGTLINEPPGEELKALADCNGRAARAAPQEVIIFARR
                     DEPPPSRRPPGAPAAAAQPSPRQRSRYEAAPDEAGAFMLRSMEQGRFRLDARPLDEGF
                     YVRSILLPGASAPNGTLDVKTGQQLSGVVVRVAPGAALVSGRVVAREEGGPLPPFSQL
                     RVHLLPAERERAEDLLRYAEATPSPDGSFVFRNLAPGRYLLVASPAADAAAARPAFWD
                     AAERARLRREAEAGGAAVELQPCRREADFALRFPAPAAK"
     gene            complement(8239..9930)
                     /locus_tag="VD968_11055"
     CDS             complement(8239..9930)
                     /locus_tag="VD968_11055"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE14969.1"
                     /translation="MRRPRALLATLSAPLLLLAACPAALAQGAQPAPAPAAVSGRVTD
                     GERGMPNVPVALTPVNAPSRNPSPLRARTGADGRYRIEGVPPGRYQVTPLSPAHVVKN
                     LEQWMAGKALEVSAGESVENVDFTLERGAVITGRVTDADGNPVVNEPVRAVFADDAQQ
                     QRGLPLSVMGRPGDHMTDDRGVYRIYGLPAGRYRLSVGRGEATGFGFGVRRFYRLTYH
                     PDVTDQAQARVVEVSAGGEATDVDIKVSTVEGTRRASGRVVSAETGRPVPGVSVIYGS
                     VFRDASRVAPSGAGATTDERGEFRIENVPPGRYAASVRPREPADWYGDIITFEVGDSD
                     VSGLEIRLRRGATVSGVAVIEGVADRAAAARMLGQVLLFPNVARAGGPVEMVGYIEPA
                     RVSPDGSFRLTGLGPGKLRIGATARELQQSLRLARVEVGGVAVTRDGIDLAEGAQVTG
                     VRLVLTYGRGVIRGQVNYAGGELPQGARVMVLARPASSLGDASPTYNAEVDSRGRFSI
                     QGLAAGEYELTVRAFGRGVVRAPTARQSVVVGDSGEASVTLTLNLGARPPQGETQ"
     gene            10124..12265
                     /locus_tag="VD968_11060"
     CDS             10124..12265
                     /locus_tag="VD968_11060"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HYE14970.1"
                     /translation="MRGLFAPLAIALAALASISGTNAMAQTNTMTAGSIPAPPAAKRV
                     AKKTEVHGETLVDEYFWLREKTSPEVISYLEAENAYADAVMKPTAALQEKLYKEMLGR
                     IKQTDQNVPYRENGYYYYTRTVEGQQYPIYARKKGSLDAPEEIVLDLNELNKGHKYTS
                     LGAYSVSDDGNLLAYSIDHNGYREYLLRIKDLRTGKDLPEDLGKVVYAFWANDNRTLF
                     YGTEDAAKRPHRLYRHTVGEPKEKDVLVAEEKDELFRLYAGRSRSRGYVFLGSESSDT
                     SEWSFVPADKPAEAPKVIVPRKKGVEYAVDHHGDKFYIRINDAGRNFRLVTAPVSDPR
                     PANWKEVIAHRDDALLEDTDMFANFYVVTERDKGLQKLRITDFKTGKSHFLEFPEPVY
                     SASVNVNKEFDTKLVRYAYQSFITPSSIYDYDVTARKSTLLKQQPVLGGYDPKQYASE
                     RVFATAPDGTKVPVSLVYKKGFKRDGSHPAHLYAYGSYGYPSNVSFSTARLSLLDRGF
                     VYALAHIRGGSDLGRAWYDEGKLMKKKNTFTDFIAAAEHLVNEKYTSKDRLVISGGSA
                     GGLLMGAVTNMRPDLFRVVVSYVPFVDVVNTMLDPTLPLTIQEYLEWGNPNEKEAYQY
                     IKSYSPYDNIAAKDYPAMLVRASLNDSQVPYWEATKYVAKLRAMKTDKNVLLLKTNMG
                     AGHGGASGRYDALRDTAFDYAFILTQLGINE"
     gene            12474..13979
                     /locus_tag="VD968_11065"
     CDS             12474..13979
                     /locus_tag="VD968_11065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14971.1"
                     /translation="MKAENEIWQVMSRGEIYQADLPTLKQWIFEGAVLPEDKVRKGGF
                     NWIEAGHAPMLRSAFTGEWQPPSAASTPAEVSTAAVTAVVEGVAAPTVAGDGAAQPFL
                     MAVPAEPEEAPALDNSCRFHPQQAPQYVCRPCAASFCRGCARRVENSMTIALCPLCGR
                     FLHEFEQVAESVALHEYQRSGFGLRDFGRALAEPLRHAPSLIGGALLYGLLLMAGARG
                     QLLASALMFGCISLVIGRVGYGRLDRDFLPDFGSFSFWDDVLVPGFLGLGVTLVTLAP
                     AALLVAALFFGVFGAGSPSAVPTVDAQALEQAAGKASRQLTPEEMERFVSGAATEEER
                     QEVERKLRELSPTGQVAREVEESKQEQQGAAVGVLRQLLARPGLILLLGLLALGWAVF
                     YHPMALLVAGWTADFKSVINPLVGIDTLRHMGLLTYAKAFAMYLAVQVVIFVTGLLVG
                     LVMSPFDMPFVGNLPATFLNGTLTFYGNLVVAYALGLALFKSADRLCIDIG"
     gene            14131..15045
                     /locus_tag="VD968_11070"
     CDS             14131..15045
                     /locus_tag="VD968_11070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14972.1"
                     /translation="MTRNARTHTRAVLSLALLLLAACTSPALAQGSLTGEWKATTDAD
                     KPGKVHLSLELRTEKGDRNQMGSDYELSDLQGLSREQMRAGGPVKFSLAREAGTIDFE
                     GSFRDGRGSGTFRFTGNQSFVSAMKARGFDFEREARPPHDGHDHAHRLFAATTLNVTT
                     ALADDLLSADFGPLDVDDLFKAAIFKVDSKFMREMKASGFPGLGMEELVKARIFKIDA
                     EFAKEVAGMGFQGEPFESLVKMRIFKVTPEFIAEARGEGLSNLSVEDLVKMKIFKIDA
                     DFIRRAKAEGVPLEVEELVQQRLGVRRR"
     gene            complement(15267..>16126)
                     /locus_tag="VD968_11075"
     CDS             complement(15267..>16126)
                     /locus_tag="VD968_11075"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HYE14973.1"
                     /translation="GWLGSYADMALGDVAGLPAISVANQLPKAFFSDRVVIPNVRMFE
                     KYALLTDPNYPGDRDNWVKTLRTLNSRTFPEGSFAQAIAGTTNDALDGAAQLQSSISG
                     YVAGAAYPSPNPLADALKMVAKVITTVPEASLFYVHINGFDTHAAQIEGGASVPPNRL
                     AGTHSTLLKYFSQGVKAFYDDLGAHGMADQTLIMQWSEFGRRPKENASLGTDHGTASV
                     SFLIGNAVRGGLYGEQPSLADATLDSGGNMGFTTDFRSIYSTVVRKWLGADPAQVLGA
                     DYGDLGFLG"
BASE COUNT         2534 a         5551 c         5502 g         2539 t
ORIGIN      
        1 acctcctcgt gaagcacagg cacgcgctcc acgccgtagg cgagccactc ggcgacggtg
       61 attgacttgt cggccggcct gaagtctgcg cgtgcgcgct ctaccgcgtc gcgcgtcagg
      121 gcgtaggtca gcaatccctg ctcgatcaac cggctctcaa gcgccacgtc gtccgcctgc
      181 gtcgaggcga gtatgcgcat tcccttgtcg tacgagagct gacccatgcc ccggctgccc
      241 atcggccccg gcttgaaccc ctcgccctgc acgctcgccg ccgagtggca ggcgtcaact
      301 actaagacca gctccccggc gtcaacgtcc cggagccaca gcgaaagctc gccgctcgac
      361 accgcgcgcg acaacgcgtc gcgcatctct cccgcgggcc cggtgtcgta aggcaggaga
      421 taaaactcgc ccgcttcgtc ggcgtagccg tgcgacgaga acgagatgat gactaagtct
      481 tcgggcgtcg ccgccctcag cttctccgcg ccggggattc gcttcacgac ttcgtcatca
      541 accttgcgcc ctgcgagcag gtcgaggacg gcccggaagt tcgccttcgt cgccgaactc
      601 tctgtcacga cgcgcggcga agtcttccgg ccctctcgcg tctcgaagtc ggagacgaga
      661 gagacgctga ctgtctcctc gtactcgccc gtctcggcga gccggccggc gacgacctcc
      721 cgaaggcggc gggcgtcgtt ggcggcgaag cgcaagtccc acgcctcgtt ctcgtaggcg
      781 ttgacgccga ccgagacgac atatgcgcgc cccttcgcgg gcttcatggt ctcgggcagc
      841 gcgaaggtct cgcgggcggt cgcgctcttc acgcggtctt cgttgaaggc gtaggccgtg
      901 aactccacct cgcgcttgcc cgtgttgcga ggcagccgca cccctcggaa ggtgacggag
      961 gcgcgccccg actcgcccgt ctttacttcg ccgccctcct cgggcgcgta ggctacgagc
     1021 tgcccctcgc ggaagagcct caggtcgtgc gcgcccttcg acacctcgac cgtgacgttg
     1081 acaagctccg gcctcgcctc gacgggctcg aacgccttga tccgcacaga gggctgcgcg
     1141 cggttgacct cagagagcga gcgcacgggg ttcatcttct cgcccgcgag cagccgcgcc
     1201 agcagccgcg gctcgtaata ctcgcgcatg aagatttcca gaggcagcgg cttcagcggg
     1261 tcgtcgggcg cgagccagtg gacgccttta agctcttcga ggttgttcgt gtcgaagcgc
     1321 ccctgcgggt caaccacaac ccaatcgccc tcgtcccgcg agagcatgcg gccgacctcc
     1381 gcgcccgtcc cgacgtcgaa caggtatgtg aatcctttcg ggtcgtgcgc gagcagcagg
     1441 cggccgtccg gcgagaaacg caggtcggcc acgccctcgc tcacgccctt cgccctgtgc
     1501 agcacgcggc cggtcgccgc gtcccagagc ctgagcgccg ggtcgccggg gtcgggcgcg
     1561 tatgtggcga gcgtgcggcc gtccggcgac catgcgacag cgccgatgcg tttgcccggc
     1621 gagcgcaact ggaagagcgc gcggccctca cgcgcgtcat agactttgac gacggcctgc
     1681 ggcgtgaaga ggtcggggtt ccccgtcgcg actagaatgc gcgcgccgtc gggcgagagc
     1741 gcaaggtcgg agggcaggtt gaatgcctcg tcggcgtcaa ccatgaaagt ctttgtgccg
     1801 gtcgggtcgt ctgcgcgcca gacggtgacg agctggtcgt cgtggtgccg gcccgccacg
     1861 gggcggcgcg tctcccacgc ggccgtcttc gtgtcgggcg tcatggcgaa ggcggcgtgg
     1921 tgcgcgtaaa cgtccttcgg gatgacatcg agcgcgggcg ccgcgcgctc cttccagtcg
     1981 cgcgtgctca ggcgcacgag gcgcgccgcg ccgcccggcg acttgtcctt gaagaaggtg
     2041 aaggtctcgt cgggcgtgaa gccggcgaag tcccacccga aggtgtgctc cttgccgggc
     2101 tcggccggcc cctctacgcg cgcgagccgc gcgcccgtcc ccgcgtcgta aacctcgccg
     2161 tgggcgccgc gcgtgaggat gacgaagcgg ccgtccggag agacctggag gtctgtggcg
     2221 ccctcgcccg ccgcccaggc ccactcgcgc cccgcgacca tctcgcgcag gcgcaccgcg
     2281 ccgtcttcac ggtcgggcgg ttgcgcggcg ttgaggatgc cgccctcggg cgtgaagacg
     2341 aagtgcgagc ggtcttccgc cctgccttcg agctgcctga gagccctgcc cgtagcaacg
     2401 tcccacagcg tcgcctcggg cgcgcccacg tagtttgtgc cgacggtgac gagcgtgcgg
     2461 ttgtccggcg agagcgcgag cgcccagccg tacagcgtgt cgcccgcctc cgagccgccg
     2521 acgctgacgc gcccgacgac ggcgcccgaa gccttgtccg tcaccactat agcgccgccc
     2581 ttcacggcga cgcgcaggcg gccgtcgggc gagagcagac tcttcgcaag ctcgtcggcc
     2641 ctcggccctt ccaactcggt gcgccgcccg ccggggccga gccgcgcgaa gtccgtgcgc
     2701 gagagcacgc ggccggtcgc cacgtcccag gtgatgcgcg agcgcggggt gtgcgtgacg
     2761 aggcggcggc cgtcggggga gaaggcgacg ggcgggcgcg cttcgtcgag cggcgcgaac
     2821 aggaactcgt cgctggacaa gcggcccagc accttcgccg actcgatgtc ccagacgcga
     2881 aggtaggggc cgaggccgac ggcgaacaga cggccgtccg gcgagaaggc gcccgacatc
     2941 caactgtagt ccgcgccgtc gtcgggcggc gcgttgcctt ccaaacgcct gacctcgcgg
     3001 ccgctggcta cgtcccagat gacggccgtc tggtcggcgc cgctgcccgt ggcgacgagc
     3061 cggccgtccg cggagaaggc cgcgaagccg ctgtcaaaag acgagtggcc gagctgcacg
     3121 acgagccgcg gctcgggggc cgccggcttc tgcgcagggg ctttgggttt agtcgcgcgg
     3181 cgcgccccgc ccctctgggc gggcgcgtcg gcggcgaaga gcagaatcag gcacaggagg
     3241 gcggcggcgc ggggtcgggt tctcgtcgtc atcgctcggg ggaacggggc ggctccgaag
     3301 gtcttgcaga gcgcaacaga tgtttatgga aagagttttg aagaactggc gcgcaaggat
     3361 gaatcaaggc ggcggggctg tcaacaacct ctgctcatgc cttttcgagc cccgcgtact
     3421 tctcgacgag cttcttctgg ccgaagccgg ggaagctgac ggttatcttg gccgagtcgc
     3481 cgacgccctc gcgccgaagc accagcccgc gcccgtactt cgggtggcgc acgtgcgtcc
     3541 ctggcgcgaa tcccgcgccg gaggaggacg aagaagacgg ggcagcgccc gcggccgggc
     3601 gcttgggcgg cggcggcgcc gcaggctgcg tgctctggtt ggcggccgcc gcgttgcgtt
     3661 tgatctggtc gccgcgctgg cggaagaact ccgcgatgga gtcaacgctg tcgtaggtct
     3721 tgccgccgta gcgcttctca gtcctgcccg tctcgccgcg cagcgcccgc gcggcgtgct
     3781 gcgcctccag ggccgaagag cttcgcgcga acgagagcca cgagccgccg cgcgagaggt
     3841 cttccagaag gtctaaaggc agctcgttta agaactgcga cggctccgac gccagctcct
     3901 cgccatagac gcggcggcgc atcgcgtgcg tgacgtagag gtggcgctcg gcgcgcgtta
     3961 tcgccacgta gcagaggcgg cgctcctcct ccatctcggc cgggtcggcc gccgagcgcg
     4021 agtgcgggaa gagcccgtcc tccatcccga cgacgaagac gagcgggaac tccaggccct
     4081 tcgccgagtg catggtcata agcgtgacgg gcgcctcggc ccggtactgg tcggcgtctg
     4141 agacgagcgc ggccgcgtca atgaagtcgc gcaggccgcc gccctcctcc gtgtcgtaat
     4201 caacggcggc gttcacaagc tcctgcaagt tctcaaggcg gccctcggcc tcctcggagt
     4261 tctccgcctt gagcgcgtcg gcgtagccgg tgtcgagtat cgccgccttc acgacctccg
     4321 aggcggcctc cttcgacgcg agcgcgacta ggccgctgat gaccgtctgg aagttcttga
     4381 gcgcggagac ggcgcgcggg ctcatgccgt cgggctggct cgtgacgatg ccgatggtct
     4441 cccacaacga gacgccgtag tccttggcgc ggcggtcgag ctcgtccagc gtctgcttgc
     4501 ccaggccgcg cggcggcgtg tttatgacgc gcataagcgc gacggagtcg tgggggttta
     4561 aggcgagctt gaggtaggag actatgtccc gcacctcggc gcgctcgtag aaggagaagc
     4621 cgccgacgat gttgtagggg atgcccgcgc ggcggagcgc ctcctcgaag acgcgcgact
     4681 gcgcgttcgt gcggtagagc accgccgcgc gaaggttcgg ctccgcccgc cggtgctctt
     4741 cgatcttcgc ggcgacgaag cgcgcctcgc cctcggcgtc cgcggcctgg tagtaacgca
     4801 ggggcgctcc cgcggggttc gccgtccaga gcttcttctc cctccgctcg gtgttgttct
     4861 ttatgacggc gtcggcggcg tcgagtatgt tctgcgtcga gcggtagttc tgctcgagct
     4921 ttatgacgcg cgcctccggg tactgctgct cgaagttcag gatgttcgag atgtccgccc
     4981 cgcgccagcg gtagattgac tgactttcgt ctccgacgac gcagacgttc tgctgcttct
     5041 gcgtcaggaa gtttatgagg gcgaactgta gggcgttggt gtcctggtac tcgtcaacga
     5101 ggatgtagcg gaagcggtcg ttgtagtggg cgcgcacgtc ctcgcgcttg cgaagcaggc
     5161 ggactgcctt aatcaggagg tcgtcgaagt cgagggcgtt gttgttcacg agccgctcct
     5221 cgtagaggcg gaatatgcgg gcgattgccg tgcggcgctc gtcgccgtac tcgacgcggg
     5281 cggcgaactg ctcggcgtcg aggccgctgt tcttggcgtg gcttatggcg ccctgcgtct
     5341 ggcgcgcgcc gagccgctgg tcatcgtagc ccaaatcctt tatcgcgccc ttgacgacgc
     5401 gcaccgagtc gtcctggtcg tagatggtga aggagcgcgt gtagccctct tcgagcttct
     5461 cgatgtcgcg cctgagcatg cggacgcaca gagagtggaa cgtggagacg agcggcgcgc
     5521 tctctaaacg ccggccgccg agcaggcggt tgacgcgctc gcgcatctcc tgcgccgcct
     5581 tgttcgtgaa ggtgacggcg aggatgttgt gcggcgcgac gccgcgctcc tgtatgaggt
     5641 aggcgatgcg caccgttatc acgcgcgtct tgccggagcc cgcccccgcg agtatcagca
     5701 gcggcccctc ggtggcggtg acggcctcgc gctgccgctc gtttaaggat gagaggatgt
     5761 cttccattcg ttatttgatc agtttctgta tcgccttgaa ttgctcgtgg cgggcgtcgc
     5821 gcaggagctc gaagagggcc atctcggtcg aggaggggag cgcgcctgag cggaacatct
     5881 tgtcgagccc gacctgccgg ttctcggccg cgcgcgacga gacgcagtcg gtgagcacgt
     5941 gaatctggaa tccgcgcgcg agcaggtcgt gcgtggtctg gttgacgcag acgtgcgcct
     6001 ctatgccgca gatgatgatc tgtcgggcgc ccgcgctctc taaacgcgag acgaactcct
     6061 gcgcgccgca ggagctgaag gcggtcttct cgacgggctc gaaaccttcc ggcagggcgg
     6121 cgcggatttc ttccgcggtg cggcccagcc ccttcgggta ctgctcggtg acgacgacgg
     6181 ggacgccgag tatctgcgcc gcgcgcgcga ccgtggctac gcgcgaggcc agcccgccga
     6241 agtcgggtat ggcccgcctg aaagattcct gcacgtcaac tatggcgagc gccgcgcgcc
     6301 cgtgctcaag cgtgttcccg tgcctcatcg ctggtctcct tacgtcggac gagcatttaa
     6361 gcacacgccg cgcagcgctc aaaacgagcg agccgcgcgg tggcgaaggg gagggacgaa
     6421 aattttattt ggcggcgggc gcggggaagc gaagcgcgaa gtcggcctcg cgacggcagg
     6481 gctgaagctc cacggcggcg ccgcccgctt cggcctcgcg ccggagccgc gcgcgctcgg
     6541 cggcgtccca gaaggctggg cgcgccgcgg ccgcgtcggc ggcggggctc gccactagca
     6601 ggtagcggcc gggcgccagg ttcctgaaga cgaacgagcc gtcgggcgag ggcgtagcct
     6661 cagcgtagcg caggaggtct tcggcgcgct cgcgctcggc gggcaggagg tgcacgcgga
     6721 gctgcgagaa gggcggcagt ggccctccct cctcgcgcgc gacgacgcgg cccgagacga
     6781 gcgccgcgcc cggcgcgacc cggacgacga cgcccgagag ctgctgcccc gtcttcacgt
     6841 cgagcgtgcc gttcggggcg gaagcgcccg gcagcagtat cgagcggacg tagaagccct
     6901 cgtcgagcgg gcgcgcgtcg aggcggaaac gcccctgctc catcgagcgc agcatgaagg
     6961 cgccggcctc gtcgggcgcg gcctcgtagc gcgagcgctg gcgcggcgag ggctgcgcgg
     7021 cggctgcggg ggcgccaggc gggcgccggg acggcggcgg ctcgtcgcgg cgcgcgaaga
     7081 tgatgacctc ctgcggagcg gcgcgcgcgg cgcgcccgtt acagtctgcg agagctttca
     7141 actcttcgcc cggcggctcg ttgatgagag tgccgcttac ggaagccagc gcggcgggct
     7201 ggattttgag gccggtcacg tccgcgccgc gcacgctcac gcggagcggc tcggaggcgg
     7261 cgacggtgcc ttcgcgcgtg tgcagttgcg ccagcaagtc gtactcgccg tcggcgacgg
     7321 cggcgacggt gaaggggcgc gccgactcct gccctaaaat gttctcgacc caggccgacc
     7381 cgaccggcat ccccgaagag ggatgcatga gcgtcacgcc cacgctcacg gcctgcccgg
     7441 cagactgcgg cacggcgacc gtgcccgtta tgcggtggcc cggctcgccg cggtagcgta
     7501 tgtctatgcc tgtcgcctcc tgccccgagc gcaccgagac ctctgcggcc gtgtcgcgcg
     7561 tggacgaagg ataaaaagtc ggcgcctccc cggcgtaggc cgaaggcaga aagccgccgg
     7621 tctgcgattc gccgcccgcg aagacgacgt aggagccggg cgcgagcccg aatatgcgat
     7681 agacgccgcg gtcgtccgtc ctgaactcgc gcgagaagcc gagcggcgcc gttgccgaca
     7741 ggcttcgccc ttcggcgtcc cgcacgcgga ttgcccgcac gcccacgccg acgacgggct
     7801 cgcccgcggc cgtaacgacg ctgcccgtaa cgacgccgcc cttgagcatg cgtatcgtca
     7861 cgttctcgcc gaggcggtag tagttgttcg ggccggcggt ctccggggcc atgacgtaag
     7921 cgggcagcac cgctaagacg gtgtaagttc cgagcgccag gccgtcgaag cggaagttgc
     7981 cttcggcgtc ggtcgtggcc gtcggcatcg cgcgcgcgac gggccccctg ctcgtgacat
     8041 agacggcggc gtaaggcagc ggctcgccgc cctcgccgac gacgcgcccc gtaatcgagc
     8101 cgaccatcgc cgggccgggc tgcgcgcccg cctgtcgcgc gaggcaaggc agcgcggggc
     8161 cggcggcggc gagcagggcc gggagcagaa ggcaccgcgc cgcggcctta aacgtcgcac
     8221 cggtcgttcg agcccggttc attgcgtctc cccctgcggc ggccgcgccc cgaggttgag
     8281 cgtgagcgtg acgctcgcct cgcccgagtc gccgaccacg acgctttgcc tcgccgtggg
     8341 cgcccgcacc accccgcggc cgaaggcgcg cacggtcagc tcgtactcgc cggcagcgag
     8401 gccctggatt gagaagcgcc cgcgcgagtc aacctccgcg ttgtaggtgg gggaggcgtc
     8461 gccgagcgag ctggcgggcc gcgccagcac catgacgcgc gcaccctgcg gcaactcgcc
     8521 gcccgcgtag ttgacctgcc cgcgtatcac gccgcggccg tatgtgagga cgaggcggac
     8581 gcccgtgact tgcgcgccct cggcgaggtc aatgccgtcg cgcgtgacgg cgacgccccc
     8641 gacctcgacg cgagcgagcc tgagcgactg ctgtagctcg cgcgccgtcg cgcctatcct
     8701 gagcttaccc ggcccgaggc ccgtcaggcg gaagctgccg tcgggcgaga cgcgcgcggg
     8761 ctcgatgtag cccaccatct cgaccggccc gcctgcgcgc gcgacgttgg ggaagagcag
     8821 cacctggccg agcatgcgcg cggcggccgc gcggtcggcg acgccctcga tgacggcgac
     8881 gccgctcaca gtcgccccgc gcctcagcct gatttccaat cccgacacgt cggagtcgcc
     8941 gacctcgaac gtgatgatgt cgccgtacca gtcggccggc tcgcgcgggc gcaccgaggc
     9001 cgcgtagcgg ccgggcggca cgttctctat gcggaactcg ccgcgctcgt ccgtcgtcgc
     9061 gcccgcgccg gaaggcgcca cgcgggaggc gtccctgaag accgagccgt aaatgacgct
     9121 aacgccgggg acgggcctgc ccgtctcggc gctcacgacg cggcccgaag cgcggcgcgt
     9181 cccctcgacc gtcgagactt ttatgtcaac gtcggtcgcc tcgccgcccg cagagacctc
     9241 gaccacgcgc gcctgcgcct ggtcggtcac gtccgggtgg tatgtgagcc ggtagaagcg
     9301 gcgcacgccg aagccgaagc ctgtagcctc gccgcgcccg acgctcaggc ggtagcggcc
     9361 agcgggcagc ccgtagattc gatagacgcc gcggtcgtcc gtcatgtggt cgccggggcg
     9421 gcccatcacg gacagcggga gcccgcgctg ctgctgcgcg tcgtccgcga acacggcgcg
     9481 taccggctcg ttgactacgg ggttgccgtc ggcgtcggtc acgcgccccg ttatcaccgc
     9541 gccgcgctcc agcgtgaagt caacgttctc gaccgactcg cccgcagaga cctcaagcgc
     9601 cttgcccgcc atccactgct ccaaattctt gacgacgtgc gccggcgata gcggcgtcac
     9661 ctggtagcgg cccggcggca cgccctctat gcggtagcgg ccgtccgcgc ccgtgcgcgc
     9721 gcgcaggggc gaagggttac gcgacggcgc gttgacgggc gtcaaagcga cggggacgtt
     9781 cggcatgccg cgctcgccgt cggtcacgcg gcccgagacg gcagcgggcg cgggcgccgg
     9841 ctgcgcccct tgcgcgagcg cggcggggca ggccgcgagc agcagcagcg gtgctgaaag
     9901 ggtcgcgagc agggctcggg gtcgtcgcat ctgtcggtcc tcattctccg gggaaggaaa
     9961 gccgccgtgg gctttaacgc gcgtgcgtgc ggcgggttcg gattttaaca gacggccggc
    10021 gcgaaatcag tagggccgcc ttgcgaggcc cgcgcgcggc cgttacaatc cggcttcaat
    10081 ctatcccgcc tcaagacgat gagagacgct tacggaggtt aagatgagag gacttttcgc
    10141 gccgctcgcc atcgcgctcg cggcgctcgc atccatttca ggcacgaacg cgatggccca
    10201 gacaaacacg atgacggcgg gctcgatccc cgcgccgccc gcggccaaac gggtcgccaa
    10261 gaagaccgag gttcacggcg agacgctcgt tgacgagtac ttctggctgc gcgagaagac
    10321 gagcccggag gtaatctcct acctcgaggc cgagaacgcc tacgccgacg cggtgatgaa
    10381 gccgacggcc gcgctacagg agaagctcta caaggagatg ctcgggcgca tcaagcagac
    10441 cgaccagaac gtcccctacc gcgagaacgg ctactactac tacacgcgca ccgtagaggg
    10501 gcagcagtac cccatctacg cgcgcaagaa ggggagcctc gacgcgcccg aggagatagt
    10561 cctggacctc aacgagctga acaagggcca caagtacacg tcgctcggcg cctactcggt
    10621 ctcggacgac gggaacctgc tcgcctactc catagaccac aacggctacc gcgagtactt
    10681 gctcaggata aaagacctgc gcacgggcaa ggacttgccc gaagacctcg gcaaggtggt
    10741 ctatgccttc tgggccaacg acaaccgcac gctcttctac ggcacggagg acgccgccaa
    10801 gcgcccccac cgcctctacc ggcacaccgt gggcgagccg aaggagaagg acgtgctcgt
    10861 cgcagaggag aaggacgagc tgttccgcct ctacgccggc cgctcgcgca gccgcggcta
    10921 cgtcttcctc ggctccgaaa gctcggacac ctccgagtgg tctttcgtcc cggccgacaa
    10981 gccggccgag gccccgaagg tcatcgtccc gcgcaagaag ggcgtcgagt acgccgttga
    11041 ccaccacggc gacaagttct acatacgcat caacgacgcg ggccgcaact tccgtctggt
    11101 gaccgccccc gtctccgacc cgcgccccgc gaactggaag gaggtgatcg cccaccgcga
    11161 cgacgcgctc ctcgaagaca ccgacatgtt cgcaaacttc tacgtggtga cggagaggga
    11221 caaggggcta cagaagctgc gcatcacgga tttcaagacc ggcaagtcgc acttcctgga
    11281 gttccccgag ccggtctata gcgcctccgt caacgtcaac aaggagttcg acacgaagct
    11341 cgtgcgctac gcttaccagt cgttcatcac gccgtcgtcc atctacgact acgacgtgac
    11401 ggcgcgcaag agcacgctgc tcaagcagca gcccgtccta ggcggctacg acccgaagca
    11461 gtacgcctcc gagcgcgtct tcgccaccgc gccggacggg acgaaagtcc ccgtctcgct
    11521 cgtctataag aagggcttca agcgcgacgg ctcgcacccg gcgcacctgt acgcctacgg
    11581 ctcatacggc tacccgtcga acgtctcgtt cagcacggcg cgcctgagcc tcctcgaccg
    11641 aggcttcgtc tatgcgctcg cgcacatacg cggcggcagc gacctcggcc gcgcatggta
    11701 cgacgagggc aagctgatga agaagaagaa caccttcaca gacttcatcg ccgcggccga
    11761 gcacctcgtg aacgagaagt acacgtccaa agacaggctc gtcatctcgg gcggctcggc
    11821 gggcgggctc ctgatgggcg ccgtgacgaa catgcgcccc gacctcttcc gcgtcgtcgt
    11881 ctcctacgtg ccgttcgttg acgtggtgaa cacgatgctc gacccgacgc tgccgctcac
    11941 gatccaggag tatcttgagt gggggaaccc gaacgagaag gaagcctacc agtacatcaa
    12001 gtcctactcg ccttacgaca acatcgccgc caaagactac ccggcgatgc tagtgcgcgc
    12061 ctccctgaac gacagccagg ttccctactg ggaggccacc aagtacgtgg cgaagctccg
    12121 ggcgatgaag accgacaaga acgtgctgct gctgaagacg aacatgggcg ccggccacgg
    12181 cggtgcctcg ggccgctacg acgccctgcg cgacacggcc ttcgactacg ccttcatcct
    12241 cacgcagctc ggcatcaacg agtaaaaccc tgctgaagcc cgacggggag gcgggccgaa
    12301 agtctttaaa gactttcggc ccgcctcctt ttttattgac acgaattcgg ccggaagtct
    12361 ttaatagaga ggtcgcggct cccctgccgc ggccactcct tacccggccc cggcgccccg
    12421 ggcgcagccc cgccgaaagt cccacgcctc tttaaaagct cacggagaag aagatgaagg
    12481 ccgagaacga gatttggcag gtgatgtcgc gcggcgagat ttaccaggcc gacctgccga
    12541 cgctgaagca gtggatattc gagggagccg tgctccccga ggataaggtc aggaagggcg
    12601 gctttaactg gattgaggcc ggccacgccc ccatgctccg ctcggccttc actggcgagt
    12661 ggcagccccc ctcggccgcg agcacgcccg ccgaagtaag cacggccgcc gtcacggctg
    12721 tcgtcgaggg agtcgccgcg ccgaccgtcg cgggcgacgg cgctgcccag cccttcctca
    12781 tggcagtccc ggccgagccg gaagaggcgc ccgcgctcga caactcgtgc cgcttccacc
    12841 cgcagcaggc gccgcagtac gtctgccgcc cctgcgcggc ctcgttctgc cgcggctgcg
    12901 cacgccgcgt cgagaacagc atgaccatcg cgctctgccc cctgtgcggg aggtttctgc
    12961 acgagttcga gcaggtggcc gagagcgtgg cgctgcacga gtaccagcgc tcgggcttcg
    13021 gcctgcgtga cttcgggcgc gcgctcgccg agccccttcg ccacgcgccg agcctcatag
    13081 gcggcgcgct cctctacggc ctgctgttga tggcgggcgc gcgcgggcaa ctgctcgcct
    13141 ccgcgctcat gttcggctgc atctctctcg tcatcgggcg cgtcggctac ggccggctcg
    13201 accgcgactt cctgcccgac ttcgggagct tctcattctg ggacgacgtg ctcgtgccgg
    13261 gcttcctcgg cctcggcgtc acactcgtca ccctcgcgcc cgcggcgcta ttagtcgcgg
    13321 cgctcttctt cggcgtgttc ggcgcgggct cgccctccgc cgtgccgaca gttgacgcgc
    13381 aggcgctcga acaggcggcc gggaaggcgt cgcggcagtt gacgccagag gagatggagc
    13441 ggttcgtgag cggcgcggcg accgaggagg agaggcagga ggtcgagcgc aagctccgcg
    13501 agctgagccc gacggggcag gtcgcccgcg aggtcgagga gtcgaagcag gagcaacagg
    13561 gcgccgcggt gggcgtgctg cggcaactgc tcgcgaggcc ggggctcata ctactgctcg
    13621 gactgctcgc gctcgggtgg gcagtcttct accacccgat ggcgctgctc gtcgcgggct
    13681 ggacggccga ctttaagtcc gtcattaacc cgctcgtcgg catagacacg ctgcgacaca
    13741 tgggcctgct cacctacgcc aaagccttcg cgatgtattt ggccgtgcag gtcgtcatat
    13801 tcgtcaccgg cctcctcgtc ggcctcgtca tgtcaccctt cgacatgccc ttcgtcggca
    13861 acctgccggc caccttcctg aacggcacgc tcaccttcta cggcaacctc gtcgtcgcct
    13921 acgcgctcgg cctcgccctc ttcaagtcgg ccgaccgcct ctgcatagac atcggctgac
    13981 gcccgccact agcgcccgcg cccggcccgc cctgagtgca gggggccggg cgctttttcg
    14041 tgggtaaatt tttctgccac gaaaccgcgc ccggcggtgt tccccttttg caacgccgcg
    14101 aaaatcttgg cccgaggaga tgtttacgct atgactagga acgcccgaac ccacacgcgc
    14161 gcagtcttga gcctcgccct gctgcttctg gccgcatgca cttcgcctgc cctcgcgcag
    14221 ggctcgctga cgggcgagtg gaaggccacg accgacgccg acaagcccgg caaagtccac
    14281 ctctcccttg agctccgcac ggagaagggc gacaggaacc agatgggctc ggactacgag
    14341 ttgtctgacc ttcagggcct cagccgcgag cagatgaggg cgggcggccc cgtcaagttc
    14401 agcctcgcgc gcgaggccgg gacgattgac ttcgagggga gcttccgtga cggccgcggc
    14461 tcaggcacct tccgctttac ggggaaccag agcttcgtct cggcgatgaa ggcgcgcggc
    14521 ttcgacttcg agagggaggc gcggccgccg cacgacgggc acgaccacgc gcacaggctc
    14581 ttcgcggcga cgaccctgaa cgtgacgacg gcgctcgcag acgacctgct ctcggccgac
    14641 ttcggcccgc tcgacgttga cgacctcttc aaggccgcca tcttcaaggt tgactccaag
    14701 ttcatgcgcg agatgaaggc gagcggcttc cccggcctcg ggatggagga gctggtcaag
    14761 gcgcgcatat tcaagattga cgccgagttc gctaaagagg tcgcggggat gggctttcag
    14821 ggcgagccct tcgagagcct cgtcaagatg cgcatattca aagtcacgcc cgagttcatc
    14881 gctgaggcgc gcggcgaggg gctctcgaac ctctcggtcg aagacctcgt caagatgaag
    14941 atattcaaga tagacgccga cttcatacgc cgcgcgaagg ccgaaggcgt cccgctcgaa
    15001 gtcgaagagc tggtgcagca acgcctcggc gtgcgccgca ggtaaactaa agcccgcggc
    15061 ttcggcacga agggggcgcg gagggttgaa acctccacgc ccccttcgtc gttctcgcgg
    15121 gccggctcgg gctaagagtt tacttgcggg cgacggacgg cgtgccgacg tactcccggt
    15181 gccagggttc gtagccctct tcaagtcggc cgaccgcctc tgcatagaca tcggctagct
    15241 gccgtgggcg gctcccacgc tcccgctcac ccaaggaagc ccaagtcccc gtaatccgcg
    15301 ccgagcacct gcgccgggtc ggcccccagc cactttctta cgaccgtgga gtagatcgag
    15361 cggaagtcgg tcgtgaaccc catgttcccg cccgagtcga gggtcgcgtc ggcgagcgac
    15421 ggctgctcgc cgtaaagccc gccgcgcacc gcgttgccta tgaggaacga caccgaggcc
    15481 gtgccgtgat ccgtgccgag cgaggcgttc tccttcgggc gccggccgaa ctcagaccac
    15541 tgcattatca aggtctgatc cgccatcccg tgcgcgccga ggtcgtcgta aaacgcctta
    15601 acgccctgcg agaagtactt gagaagcgtg gagtgcgtgc ccgcaagcct gttcggcggg
    15661 acgctggcac cgccctcgat ctgcgccgcg tgggtgtcga acccgtttat gtggacgtag
    15721 aacaggctgg cctcggggac ggtcgtaatc accttcgcaa ccatcttcag cgcgtcggcc
    15781 agcgggttgg gcgaggggta ggccgccccc gccacgtaac cgcttattga agactgtagc
    15841 tgggcggcgc cgtcgagcgc gtcgttggtc gtgcccgcta tcgcttgggc gaagctgcct
    15901 tcggggaagg tgcgcgagtt cagcgtgcgt aaagtcttga cccagttgtc ccggtcgccg
    15961 gggtagttcg ggtcggtcag tagcgcgtat ttctcaaaca tcctcacgtt cgggatcacg
    16021 acccggtcgc tgaagaacgc cttcggcaac tggttggcga cggagatggc gggcagcccc
    16081 gccacgtcgc cgagcgccat atccgcgtag gagccgagcc agccga
//
LOCUS       DASPKR010000411         4311 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_316927, whole genome shotgun sequence.
ACCESSION   DASPKR010000411 DASPKR010000000
VERSION     DASPKR010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4311)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4311
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316927"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..2053)
                     /locus_tag="VD968_11080"
     CDS             complement(158..2053)
                     /locus_tag="VD968_11080"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase family protein"
                     /protein_id="HYE14974.1"
                     /translation="MRSIKNLSLTLLILAAFAAALVAPARVAGQRTAKPVLHGRRWMA
                     ITGKPLGATAGAMVFQKGGNAVDAACAMIAATSTMWDTLSWGGETQALIYDPRAKKVV
                     GINALGVAPTGATAEFYKSKKMRYPPEHGPLAAVTPGTPGGILVMLAEYGRLSLKDVL
                     APSIEMADGYPIEAQAANLIEREKRRLKQWKYTREVMLPHLGEQREAPRPGEIFKQPD
                     LAATLRKLVEAEQQALAAGKSRREAIMAAYDRFYRGDIARELVRGAREEGGLITMEDL
                     AKWKVKIEEPVSTNYKGVEVYKLTHWTQGPAMLQALNILENFDLKAMGYNSARYMHAV
                     YQAMSMAFADRDFYYGDPDFAPEEPIRGLLSKEYAKQRASQVKWERNDPDIKPGDPYP
                     FQGQTNPFRGLLDKWSPRPGTGAPARTQDSASSVGRGDDALDRAFYAGTTSVEAADAE
                     GWVVSVTPSGGWIPAVVAGRTGIGLSQRAQSFVTDPAEGPFNVIEPGKRPRVTLTPTL
                     ALKDGRPYLAFAVQGGDSQDQNLLQFFLNVVEFGMNVQEAAEAPNINSFQMRSSFGDH
                     DSRPGRILLAESVPPWVRTELRRMGYELTFEERTSGPINAIFFDSRHGTMWGGASHHG
                     EDYGIAW"
     gene            2124..3119
                     /locus_tag="VD968_11085"
     CDS             2124..3119
                     /locus_tag="VD968_11085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14975.1"
                     /translation="MNRGIVVSVFLIVACLGAACNSLPLADGGSARGAKAARRPGQSK
                     AAKKAGAAREANPSARAVRLEDASVRESSGVAASRRNPGLYWTHNDSGDGPLIYAFDG
                     DGRKRGVWRVEGASSRDWEDIACGPGPARGAHYLYVGDIGDNKRARDFVTVYRLREPA
                     VAAPDAASTRKSPRATEPAEAIRLKYPDGPRDAEALMVHPKSGDIYIVTKGSVAEVYK
                     LGAAEAAPGEVRTLARVGEFSSGGLFGGLITGGDISPDGRRVALCDYVSGYELRLPDA
                     KADKFDAVWRQEPAPVNLGPREQGEALCYTLDGSSLVATSEGSPASIILVPLPGN"
     gene            complement(3130..>4311)
                     /locus_tag="VD968_11090"
     CDS             complement(3130..>4311)
                     /locus_tag="VD968_11090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14976.1"
                     /translation="NLPAKAYVWVVREDPKNPRLIYAGTELGLYVSYTGGGSWTSLGL
                     KNLPNVAVHDILVHPRDNDLILATHGRSIWILDDATPVQQLTPEVARRDAYLFDIRPA
                     VRFTSRMTRYGIGDKVFTGQNPPYGALISYNLKEKPDDKTKVKIQILDSAGKTVSEIE
                     NAAKEKGLNRASWNLRYGGPQVRRPPTDEETQFTGGPRGPQVLPGTYTVRLLVGEKSF
                     EKKVEVRLDPTISVPAEELKEQLDMMLSLRDMQSAANTALRTLDSLKGQLEFVERTAK
                     DRLAEVPKELSDRLAEQKKRVEELQNKLAQPQGGLGFSGKEQLADKIGGLFFAVDATN
                     AAPTPAQRDRYAELKTEFGVKLAEVNKFLRETVPQLNETLRRFDAPTLMTGKPIELPK
                     P"
BASE COUNT          600 a         1469 c         1482 g          760 t
ORIGIN      
        1 caggtcgcgc gcccgcggct tcttctgcgc gaggcagggt gcggccgcgg cgagtgcgag
       61 cgccgccgcc aaagacaacg atgcgagtct gagcagagag cgtcgtggca tccgttcgtc
      121 ctcccgccgt caggttcttc gttcttgagt gcgtcgccta ccaggctatg ccgtagtcct
      181 cgccgtggtg gctcgccccg ccccacatcg tgccgtgtcg cgagtcgaag aagattgcgt
      241 tgatggggcc ggaggtgcgc tcctcgaagg tcagctcgta gcccatccgt cgtagctccg
      301 tgcgaaccca gggcggcacg gactcggcca gaaggatgcg gccgggccgc gagtcgtggt
      361 cgccgaagga gcttcgcatc tggaagctgt tgatgttcgg cgcctcggcg gcctcctgca
      421 cgttcatacc gaactcgacg acgttcagga agaactggag gaggttctga tcctggctgt
      481 cgccgccctg cacggcgaac gcaaggtagg ggcggccgtc tttgagcgcg agcgtgggcg
      541 tgagcgtgac gcgcgggcgc ttgcccggct cgatgacgtt gaaggggcct tccgccgggt
      601 ctgtgacgaa gctctgcgcg cgctggctca agcctatccc ggtgcggccg gcgacgacgg
      661 ccggtatcca gccgccgctc ggcgtcacgg acacgaccca gccttcggcg tctgccgcct
      721 cgaccgaagt cgtgcccgcg tagaacgccc ggtcgagcgc gtcgtcgccg cgcccgaccg
      781 aggaggccga gtcctgcgtg cgcgcgggcg cgcccgtgcc ggggcgcggg ctccacttgt
      841 cgagcagccc gcggaagggg ttcgtctggc cctggaacgg gtaggggtcg ccgggcttta
      901 tgtcggggtc gttgcgctcc cacttcactt gagaggcgcg ctgcttcgcg tactccttcg
      961 agagcaggcc gcgtatcggc tcctcgggcg cgaagtcggg gtcgccgtag tagaagtcgc
     1021 ggtcggcgaa ggccatgctc atcgcctgat agacggcgtg catgtagcgc gcgctgttgt
     1081 agcccatcgc cttgaggtcg aagttctcga ggatgtttag ggcctgaagc atcgcgggcc
     1141 cctgcgtcca gtgcgtgagc ttatagacct cgacgccttt gtaattcgtg ctgaccggct
     1201 cctcgatttt gaccttccac ttcgccaggt cttccatcgt gatgaggccg ccctcttcac
     1261 gcgccccgcg cactagctcc cgcgcgatgt cgccccggta gaagcggtcg taggcggcca
     1321 ttatcgcctc gcggcggctc ttgccggcgg cgagcgcctg ctgctcggcc tcgaccagct
     1381 tgcggagcgt cgcggccagg tcgggctgct tgaaaatctc gccgggccgt ggcgcctcgc
     1441 gctgctcgcc caggtggggc agcatcacct cgcgcgtgta cttccactgc ttgaggcggc
     1501 gcttctcgcg ctcgatgagg ttggcggcct gcgcctcgat ggggtagccg tcggccatct
     1561 cgattgaggg cgcgagcacg tccttcaggc tcagcctgcc gtactcggcg agcatgacga
     1621 gtatgccgcc gggcgtcccc ggcgtcaccg cggcgagcgg cccgtgctcg ggcgggtagc
     1681 gcatcttctt cgacttgtag aactcggccg tcgcccccgt cggcgccacg ccgagcgcgt
     1741 ttatgcccac gaccttcttc gcgcgcgggt cgtagatgag cgcctgcgtc tcgccgcccc
     1801 acgagagcgt gtcccacatc gtcgaggtgg cggctatcat ggcgcaggcc gcgtcaacgg
     1861 cgttgcctcc cttctggaag accatcgcgc ccgcggtcgc gccgagcggc ttgcccgtta
     1921 tcgccatcca gcggcggccg tgcaggacgg gcttggccgt gcgctggccc gcgacgcgcg
     1981 cgggcgcgac gagcgccgcc gcgaaggccg cgagaatcag gagtgtgagc gacagatttt
     2041 taatcgaacg catacgtccc ctccgccgta agagaatccg agttgctata atgacgggca
     2101 aaacacgagg ggggctttcg tcagtgaaca gggggattgt cgtttcggtc tttctcattg
     2161 tcgcctgcct gggcgccgcg tgcaattccc tgccgctcgc ggacggcggg agcgcccggg
     2221 gcgcgaaggc ggcacgaagg ccggggcaga gcaaggccgc gaagaaggcc ggcgccgcgc
     2281 gcgaggcgaa cccctcggcg cgcgccgtga ggctcgaaga cgcttcggtg cgcgagtcga
     2341 gcggggtggc ggcgtcgcgc cgaaaccccg gcctctattg gacgcacaac gactctggcg
     2401 acggccccct catctacgcc ttcgacggcg acggccgcaa gcgcggcgtc tggcgcgtcg
     2461 agggcgcgag ttcgcgcgac tgggaggaca tcgcctgcgg ccccggcccc gctcgcggcg
     2521 cgcactacct ctacgtaggc gacataggcg acaacaaacg cgcgcgcgac ttcgtcaccg
     2581 tctatcggct gcgggagccc gcggtcgcgg cgcccgacgc cgcctcgacg cgcaagagcc
     2641 cgcgagcgac cgagccggcc gaggccataa ggctcaagta ccccgacggc ccccgcgacg
     2701 ccgaggcgct catggtccac ccgaagtccg gcgacatata catcgtgacg aagggctcgg
     2761 tggccgaagt ctataagctc ggcgcggccg aggcggcgcc gggcgaggtg cgcacgctcg
     2821 cccgcgtggg cgagttcagc tcgggcggcc tcttcggcgg tttgatcaca ggcggcgaca
     2881 tctcgcccga cggccgccgc gtcgcgctct gcgactacgt gagcggctac gagctgcgcc
     2941 tgcccgacgc gaaggccgac aagttcgacg ccgtctggcg gcaggagccc gcgcccgtaa
     3001 acctcggccc gcgcgagcag ggcgaggcgc tatgctacac gctcgacggc tcctcgctcg
     3061 tcgccaccag cgagggctcg cccgcctcaa tcatcctggt cccgctcccc ggcaactgac
     3121 gcccgcccgt catggcttcg gtagctcgat gggcttgccc gtcatcaagg tcggcgcgtc
     3181 gaagcggcgc agcgtctcgt ttagctgcgg gacggtctcg cgcaggaact tgttgacctc
     3241 ggcgagcttc accccgaact ccgtcttaag ctccgcgtag cggtcgcgct gcgccggcgt
     3301 cggcgccgcg ttcgtcgcgt caacggcgaa gaagaggccg cctatcttgt cggcgagctg
     3361 ctccttgccg gagaagccca gccccccctg cggctgcgcc agtttgttct gaagctcctc
     3421 gactcgcttc ttctgctcgg cgagcctgtc ggaaagctcc ttcggcactt ccgcgagcct
     3481 gtccttcgcc gtgcgctcga cgaactctaa ctgccccttg aggctgtcga gcgtgcgaag
     3541 ggccgtgttc gccgccgact gcatgtcgcg cagcgatagc atcatgtcga gctgctcctt
     3601 gagttcttca gccgggacgc tgattgtcgg gtcgagccgc acctcgacct tcttctcgaa
     3661 agacttctcg cccaccaaca gcctcacagt gtatgtgccg ggaagcacct gcggcccgcg
     3721 cggcccgccc gtgaactgcg tctcctcgtc cgtcggcggc ctccgcacct gcggcccgcc
     3781 gtagcgcaga ttccacgagg cgcggttgag gcccttctcc ttagcggcgt tctcaatctc
     3841 ggagaccgtc ttcccggccg agtcgagaat ctgaatcttc accttcgtct tgtcgtcggg
     3901 cttctccttg aggttgtagc tgatgagcgc gccgtatggc gggttctggc ccgtgaagac
     3961 cttgtcgccg atgccgtagc gcgtcatgcg cgaggtgaag cgcacggcgg ggcggatgtc
     4021 gaagaggtac gcgtcgcgcc gcgccacttc gggcgtgagc tgctggacgg gcgtggcgtc
     4081 gtcgagtatc cagatggagc gcccgtgcgt cgcgagtatc aaatcgttgt cgcgcgggtg
     4141 gacgagtatg tcgtggacgg cgacgttcgg caggttcttt agccccaggc tcgtccagct
     4201 cccgccgccc gtgtacgaga cgtagaggcc gagctccgtg ccggcgtaga tgaggcgcgg
     4261 gttcttcggg tcttcgcgca cgacccagac gtaagccttc gccgggaggt t
//
LOCUS       DASPKR010000412         2936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1869766, whole genome shotgun sequence.
ACCESSION   DASPKR010000412 DASPKR010000000
VERSION     DASPKR010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2936)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2936
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1869766"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1071)
                     /gene="leuB"
                     /locus_tag="VD968_11095"
     CDS             complement(<1..1071)
                     /gene="leuB"
                     /locus_tag="VD968_11095"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: protein motif:HMM:NF012407.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HYE14977.1"
                     /translation="MKLSITTLPGDGVGPEVTAEAARVLRAVAEYYGHEFTFDERPVG
                     GEAIREHGTPLPTSTLDACLAGDAVLLGAVGSPEFDGLPPGERPEAGLLTLRRALGAY
                     ANLRPVVCHDALADCTPLRPERVAGADILVVRELLGGLYFGEPRGFTTDKGGEASAAF
                     NTMRYTAAEVERVARVAFDAALSRRHKVTSVDKANVLETSRLWRETVSRVALDYPTVT
                     LEHLYVDACAMHLINDPRRFDVLLTENLFGDILSDEAAVLAGSLGLLASASVGGHVGL
                     YEPVHGSAPDIAGRGLANPLGAISSAALLLRHAARLEREAQEVEAAVEAVLRAGYRTP
                     DIARGSEGLSVVGTSEMGRLVVE"
     gene            complement(1175..2407)
                     /locus_tag="VD968_11100"
     CDS             complement(1175..2407)
                     /locus_tag="VD968_11100"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: protein motif:HMM:NF002086.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HYE14978.1"
                     /translation="MKDVNKGEPGGRVTIFDTTLRDGEQSPGCSMNLEEKLRLARQLE
                     RLGVDVIEAGFPIASEGDFAAVRAVAAECRGARVAALCRTAEADIRRAWEALRGAARP
                     RIHTFVATSDIHLEYKLRKTRDEVLEMTRKAVRLARTLADDVEFSAEDATRSDVDYLC
                     EVFAAAVEEGATTLNVPDTVGYTTPTEFRELVSAVRERAVGDRDDVTISVHCHNDLGL
                     AVANSLAALDAGARQIECTVNGIGERAGNAALEEVVMAMHVRADRLPFACDVRTEEIY
                     PTSQLLSRIIGFGVQPNKAVVGRNAFAHEAGIHQHGVLSNPLCYEIMTPESVGVPANS
                     IVLGKHSGRHALGARYGELGYTLSRPELEAAYTRFTRLADRKKNIYDQDLISLLPQEA
                     RARGPRRARAAEFELAGA"
     gene            complement(2529..>2936)
                     /locus_tag="VD968_11105"
     CDS             complement(2529..>2936)
                     /locus_tag="VD968_11105"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HYE14979.1"
                     /translation="ELVLIMSPEHPLAGRESVAVKDLGGEPFLAHNVKSASRVKVIDT
                     FARHHTPLNITLELATIETIKRFVQKKVGLAFVPRMCVSEELERGALSTVPVRGLTYT
                     RTLWAAHRRGATHSHAAAAFLELLRRHAKTRHA"
BASE COUNT          448 a          979 c         1037 g          472 t
ORIGIN      
        1 ctcgacgacg agccggccca tctcggacgt gccgacgact gagagaccct cggagccgcg
       61 cgcgatgtcc ggcgtgcggt atccggcgcg cagaaccgcc tcgacggcgg cctcgacctc
      121 ctgcgcctcg cgttcgagtc gcgccgcgtg tcggagcagc agcgcggcgg aggagatcgc
      181 gccgagcggg ttggcaagcc cgcgaccggc gatgtccggc gcggagccgt gcacaggctc
      241 gtaaaggccg acgtggcctc cgacgctcgc cgaggcgaga aggccgagcg agcctgcgag
      301 cactgcggcc tcgtccgaga ggatgtcgcc gaagaggttt tccgtgagca gcacgtcgaa
      361 tcgccgcggg tcattgatca agtgcatcgc gcaggcgtca acgtagaggt gttcgagcgt
      421 gaccgtaggg tagtcgagcg cgacgcgcga aacggtctcg cgccagagcc gcgatgtctc
      481 aaggacattg gccttgtcaa cggaagtcac cttgtggcgg cgcgagagcg cggcgtcgaa
      541 ggcgacgcgc gcgacgcgct cgacctcggc ggccgtgtag cgcatcgtgt tgaaagccgc
      601 gctagcctcg ccgcctttat cagttgtgaa acctcgcggt tcgccaaagt agaggccgcc
      661 gagaagctcg cgcacgacga ggatgtccgc gcccgcgacc ctctccggtc gcagcggcgt
      721 acagtcggcg agcgcgtcgt ggcagacgac ggggcgcagg ttcgcatacg cgccgagcgc
      781 ccgccgcagc gtgagcaacc ccgcttcggg ccgctcgccc ggcggtagcc cgtcgaactc
      841 cggcgagccg accgcgccga gcagcacggc gtccccggcg aggcacgcgt cgagcgtcga
      901 agtcggcagc ggcgtcccgt gctcgcgtat cgcctcgccg ccgacgggtc gttcgtcgaa
      961 ggtgaattcg tgcccgtaat actcggccac ggcgcgcagc acgcgcgctg cttccgccgt
     1021 cacctccggg ccgacgccgt caccgggcag cgtcgtgatg ctcaacttca tcctgttatc
     1081 acgtcctttt aagcaagtta agcaagtggc cgcgggtcgc ccgccgtctg acgcccgcgg
     1141 gcgacccgcg gctgaagccc gcgcggggtc tcactcacgc gccggccaac tcaaactcgg
     1201 cggcgcgcgc gcggcgcggc ccgcgcgccc gtgcctcctg tgggagcagg gagattaaat
     1261 cctgatcgta gatgttcttt ttgcggtcgg ccagccgcgt gaaccgcgtg taggccgcct
     1321 ccagctcggg gcgcgacagc gtgtagccga gttcgccgta gcgcgcgccg agcgcgtggc
     1381 gaccggagtg cttgcccagc acgatgctgt tcgcggggac gccgaccgac tcgggcgtca
     1441 tgatctcgta gcagagcgga ttgctcaaca ccccgtgctg gtgaatcccg gcttcgtgcg
     1501 cgaaggcgtt gcgccccacg accgccttgt tcggctggac gccgaagccg attatccgcg
     1561 agaggagttg gctcgtcggg taaatctctt ccgtgcggac gtcgcacgcg aagggtaggc
     1621 ggtcggcgcg cacgtgcatc gccatcacga cctcttcgag cgcggcgttc ccggcgcgct
     1681 cgccgatgcc gttgacggtg cactctatct ggcgcgcgcc cgcgtcgagc gcggccagac
     1741 tgttggcgac ggcgaggccg aggtcgttgt gacagtggac gctgatggtc acgtcgtcgc
     1801 ggtcgccgac ggctcgctcg cgcacggcac tgacgagttc acgaaactcg gtcggcgtcg
     1861 tgtagccgac cgtgtcgggg acgttcaggg tcgtcgcgcc ctcctcgacc gccgccgcga
     1921 agacctcgca caggtaatca acgtcgctgc gcgtcgcgtc ctcggcggag aactcgacgt
     1981 cgtcggcgag cgtgcgcgcg agccggacgg ccttgcgcgt catctccaaa acctcgtcgc
     2041 gcgtcttcct cagcttgtat tcgagatgta tgtcggaggt ggcgacgaac gtgtggatgc
     2101 gcgggcgggc cgcgccgcga agcgcctccc acgcgcgccg gatgtcggcc tccgcggtcc
     2161 ggcagagcgc ggccacgcgc gcgccgcgac actccgccgc gacggcgcgg acggcggcga
     2221 agtcaccctc ggaggcgatg gggaagccgg cctcgatcac gtcaacgccg aggcgttcga
     2281 gttggcgcgc gagccgaagc ttctcctcca gattcatcga gcagccgggc gactgctcgc
     2341 cgtccctgag cgtcgtgtcg aagatggtca cacgcccgcc gggctcgcct ttattcacgt
     2401 ctttcatagg ggctccgtcc tccaagcaag cggccatcct agagagcgcc ggggccttaa
     2461 gtcaaagtta tagtttttat aggtggataa atttggttaa tgcggagccc gccggccggc
     2521 gggccggctt acgcgtggcg ggttttagcg tgccggcgca gcagttcgag gaaggccgcg
     2581 gcggcgtgtg agtgcgtcgc cccgcgtcgg tgcgcggccc agagcgtgcg cgtgtaggtc
     2641 agaccgcgca cggggacagt cgagagcgcg ccgcgctcaa gctcctcgct cacgcacatg
     2701 cgcgggacga aggcgaggcc gaccttcttc tgcacgaacc gcttaatggt ctcgatggtc
     2761 gcgagctcca gagtgatgtt gagcggcgtg tggtgacggg cgaaggtgtc tatgactttc
     2821 acgcgggagg cggacttgac gttgtgcgcg aggaacggct cgccgcccaa gtccttgacc
     2881 gcgaccgact cgcgaccggc gagcgggtgc tcggggctca taattaaaac cagttc
//
LOCUS       DASPKR010000413         2851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_447758, whole genome shotgun sequence.
ACCESSION   DASPKR010000413 DASPKR010000000
VERSION     DASPKR010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2851)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2851
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447758"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VD968_11110"
     CDS             <1..186
                     /locus_tag="VD968_11110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14980.1"
                     /translation="SQLRAGAKNYDIPPDALITVQNDSGQIAARVRWARPIHLPGYVY
                     QYKFDHTARSSGFINPQ"
     gene            complement(194..2086)
                     /locus_tag="VD968_11115"
     CDS             complement(194..2086)
                     /locus_tag="VD968_11115"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HYE14981.1"
                     /translation="MSKKITESHRRRLATEEGWVLKRGASLRVALCYPNVYGVGMANL
                     GFQSVYEIFNRIPEVSCERVFLPEEAEAREYEKTGAPLVSMESQRPVRDFDVVAFSVS
                     FETDYYHVARMLRLAGIPLWSRERTAHDPVVVMGGAASFLNPEPIADFTDVVAVGEGE
                     VLAPRLIDLIFENADEGGAKEDLLLKLARGGRGFYVPSLYEVSYNADGTVSAYEPKAE
                     GVPKRVGRVLAAENPKEGSLRRAIRRGDMDVAEALKSADVFAPSTVIWAPEAEMGERF
                     LVEISRGCSQGCRFCWAGFNYWPPRVVPARDVLAKAAEWRSRTDKIGLVSTAVCDHPE
                     ISQILQGLRGMGYKISVSSLRLDQIEDELLDVLVESGDQQIAVAPETGSDRLRKVINK
                     NLTNDEIVDICGAVFDRGMLTVKLYLMAGLPTETDEDLEEMVALVTRIKDRMLEAGKR
                     FGRVGKIIPALNGFVPKPNTPFQWEPICEEKELKRRLKWLSKALSRVPNVEVRVMSAR
                     IAHEQALFSSGDRTVARVIESMTRQRGDLQAALRETGVGAGFHTGRARPYSETLPWEV
                     VDAGISREFMEREHARSHAVRSTAPCPSVDTCTRCGVCPTTWLADAPAGLVKLQGIKT
                     SAAAAA"
     gene            complement(2161..>2851)
                     /gene="rpoD"
                     /locus_tag="VD968_11120"
     CDS             complement(2161..>2851)
                     /gene="rpoD"
                     /locus_tag="VD968_11120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012762427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HYE14982.1"
                     /translation="SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEWRRGYKFSTYAT
                     WWIRQAVTRAIADQARTIRIPVHMIETINKLIRTSRALVQELGREPTTEEIAAKVDMP
                     VAKVRGVFKLAQQPISLETPIGEEEDSHLGDFIEDKSILNPADAVVASNLREITDEVL
                     ATLTPREEKVIKMRFGLGTSGSEHTLEEVGQHFAVTRERIRQIEAKALRKLRHPSRSR
                     KLKAFLEGTRQ"
BASE COUNT          462 a          949 c          918 g          522 t
ORIGIN      
        1 tcgcaactgc gcgcaggggc gaagaactac gacatcccgc ccgacgccct catcaccgtc
       61 cagaacgatt cgggccagat agcagcgcgc gtgcggtggg cgcgccccat ccacctcccc
      121 ggctacgtct atcagtacaa gttcgaccac accgccagga gcagtggctt cattaaccct
      181 cagtagcgag ccttcaggcg gcggccgccg cggaggtttt aatcccttga agtttgacca
      241 ggccggcggg cgcgtcggcg agccacgtgg tggggcatac gccgcagcgt gtacaggtgt
      301 caacggaggg gcagggggcc gtggagcgca cggcgtgcga gcgcgcgtgc tcgcgctcca
      361 tgaactcgcg cgagatgccg gcgtcaacta cctcccaggg aagagtctcg gagtagggcc
      421 tggcgcggcc cgtgtggaag cccgcgccca cgcccgtctc gcgcagggcc gcctgaaggt
      481 cgccgcgctg tcgcgtcatt gactctatga cgcgcgccac cgtgcggtcg ccggaggaga
      541 agagcgcctg ctcgtgcgct atgcgcgccg acatcaccct cacctccacg ttcgggacgc
      601 gcgagagcgc cttcgagagc cacttcaaac ggcgcttcag ctccttctct tcgcagatgg
      661 gctcccactg gaacggcgtg ttcggcttcg gcacgaagcc gttgagcgcc gggataatct
      721 tgccgactcg gccgaaccgc ttgccggctt cgagcatgcg gtctttgatg cgcgtgacga
      781 gggcgaccat ctcctctaag tcttcgtcgg tctcggtggg caggcccgcc atcaggtaga
      841 gcttgacggt gagcatgccg cggtcgaaga cggcgccgca gatgtcaact atctcgtcgt
      901 tcgtgaggtt cttgttgatg acctttcgca ggcggtctga cccggtctcg ggggccacgg
      961 ctatctgctg gtcgcccgac tcgacgagca cgtcaagaag ctcgtcctca atctggtcga
     1021 ggcgcaggga cgagaccgaa atcttatacc ccatcccgcg aaggccctgg agtatctggc
     1081 ttatctccgg gtggtcgcag acggccgtgg agacgagccc tatcttgtcg gtgcgcgagc
     1141 gccactcggc ggctttagcg agcacgtcgc gcgcggggac gactcgcggc ggccagtagt
     1201 tgaagcccgc ccagcagaag cggcacccct gcgagcaccc gcgcgaaatc tcgacgagga
     1261 agcgctcgcc catctcggcc tcgggcgccc atatgacggt cgagggcgcg aacacgtcgg
     1321 cgctcttcag ggcctcggca acgtccatgt cgccgcgtcg gatggcgcgc ctgagactcc
     1381 cctccttcgg gttctcggcc gcgagcacgc ggcccacgcg cttcggcacg ccctcggcct
     1441 tcggctcgta ggccgacacg gtgccgtcgg cgttgtagct cacctcgtag agcgaaggca
     1501 cgtagaagcc gcggccgccg cgcgcgagct tcaagagcag gtcttccttt gccccgcctt
     1561 cgtcggcgtt ctcgaatatc aggtcaatga ggcgcggcgc gagcacctcg ccctcgccga
     1621 cggcgacgac gtccgtgaag tcggctattg gctcggggtt taggaaggat gcggcgccgc
     1681 ccatcacgac gacggggtcg tgggcggtgc gctcgcgcga ccagaggggt atgccggcga
     1741 gccggagcat gcgcgcgacg tggtagtagt ccgtctcgaa cgagacggag aaggccacca
     1801 cgtcgaagtc gcgcacgggc ctctgcgact ccatcgagac gagcggcgct ccggtcttct
     1861 catattcgcg cgcctcggcc tcttcaggga ggaagacgcg ctcgcaggag acctccggta
     1921 tccggttgaa aatctcgtaa accgattgaa agccgaggtt cgccatcccg acgccataga
     1981 cgttcgggta gcacagggcc acgcgcaggg aagccccgcg ctttaagacc cagccctcct
     2041 cggtcgccaa gcgccgccgg tgactttctg taatcttctt cgacattaaa aaccttacgg
     2101 caagcccggg attagatgcc cgaagcttgc cgccagttta ccgccctttc cccgccgggg
     2161 ctactgccga gtcccctcga ggaatgcttt cagcttccgg gagcgcgagg ggtggcgcag
     2221 cttcctcaga gctttggcct ctatctggcg tatgcgctcg cgcgtcacgg cgaagtgctg
     2281 gccgacctct tcgagcgtgt gctcggagcc gctcgtcccc aggccgaagc gcatcttgat
     2341 gaccttctcc tcgcgcggcg ttagggtagc gagcacctcg tcggttatct cgcggaggtt
     2401 cgaggcgacg accgcgtccg cggggttgag gatggacttg tcctctatga agtcgccgag
     2461 gtgcgagtcc tcctcctcgc cgatgggtgt ctccaaagag atgggctgct gcgccagctt
     2521 gaacacgccg cgaaccttcg ccacgggcat gtcaaccttc gccgcaatct cttcggtcgt
     2581 gggctcacgc cccagctcct gcaccagcgc gcggctcgtg cgtatgagct tgtttatcgt
     2641 ctctatcatg tgcacgggga tgcggatggt gcgcgcctga tccgcaatcg ccctcgtcac
     2701 ggcctggcgg atccaccacg tcgcatacgt ggagaacttg tagccgcgcc tccactcgaa
     2761 cttgtccacg gccttcatca gcccgatgtt gccctcctgt atgaggtcga ggaactgcag
     2821 gccgcggttc gtgtacttct tcgctatgga g
//
LOCUS       DASPKR010000414         7569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_577249, whole genome shotgun sequence.
ACCESSION   DASPKR010000414 DASPKR010000000
VERSION     DASPKR010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7569)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7569
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_577249"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            172..1071
                     /locus_tag="VD968_11125"
     CDS             172..1071
                     /locus_tag="VD968_11125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14983.1"
                     /translation="MKRTFLLLSAACLLAALSVSAAAQTAGPPKVFLFEREELKPGAF
                     DAHLREANNFARMLAHARKAGEPAYVRLGMFPVAGNYNEVFYAYPFNSLEQWAQSQRD
                     IQRWMSTPGPMRTYFESIAGPQRPAEDLHTSVRSMVAVYRPELSLNPRQSLAKARYVS
                     LSTMRVKMGHYGDFMKLAGMYTDAMKRMKGDHHWAMYEVVGGAPEGTFLILSSMEKLA
                     EMDAMMANASEFPKAMGDKLDDFEKLMAASIESMATNIYAINGRMSSVPAEYMAADPA
                     FWSQELPAPPTSTTATASKKRQK"
     gene            complement(1154..2443)
                     /locus_tag="VD968_11130"
     CDS             complement(1154..2443)
                     /locus_tag="VD968_11130"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE14984.1"
                     /translation="MAAAGGDAGRRAGRAGEMFRALSHRNFRLFWAGAFLSNSGTWMQ
                     TVAQSWLVLQLTNSAFWLGVDTFAATVPGLLLTLPAGVFADQLDRKRLLLLAQVGAGA
                     SALTLAALVRAGVVGEAADVWMILLLSFVTGCCFSVAGPSYQAITVDLVERHDLANAI
                     ALSSVQFHFSRVVGPLLAGLAMGLVGVAGCFLLNGLSFVAIIVALSLVRMPARPGAPG
                     VPAKAGSPKGVRSLLRDLAGGFRYMRGHQMVRLLLVCSTAVSLFGAPYLVLVPLFAKN
                     IYGWGEAGLSLLMGTAGAGALAGSLMLAYLGDFRRKGWFALASSFAGGASIVGFGTAS
                     SPALAVPLLFCVGFTMVSFFAVSNTLLQQLVSDEMRGRVMSMWILTFIGTMPVGSFLA
                     GAAAERFGPQPTLAACGLVVALFAVVTGALNPRLRGL"
     gene            2649..2789
                     /locus_tag="VD968_11135"
     CDS             2649..2789
                     /locus_tag="VD968_11135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14985.1"
                     /translation="MIAFAITLLYWHAYRKREALELNELESHGTRAQSQENALMVCVG
                     LF"
     gene            complement(2999..3832)
                     /locus_tag="VD968_11140"
     CDS             complement(2999..3832)
                     /locus_tag="VD968_11140"
                     /inference="COORDINATES: protein motif:HMM:NF024869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HYE14986.1"
                     /translation="MATAGEGAGRPRAGKVARRAAQVLSEGALAALATLIEAPRSVGA
                     KILLEEAGRQTGTTGDAALDAALAAHARAFLASRAEARTFSVEEFAPGLEEWRGSRVL
                     LERVEAEPRVVVCGAGHVGASLARLARSIGYGVTLIDDRAEFVARARFPDEGVELVAA
                     SGGWGGAVARAVGGGRGIYVAVVTRGHNEDEECMRAVLAARPDYVGMIGSRRRTNIVL
                     GRLREAGFDEEALRQVRAPVGLDIGAVSPEEVALSILAEIVAHRRGGTGAPLSDWRRR
                     E"
     gene            complement(3840..4154)
                     /locus_tag="VD968_11145"
     CDS             complement(3840..4154)
                     /locus_tag="VD968_11145"
                     /inference="COORDINATES: protein motif:HMM:NF017897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF962 domain-containing protein"
                     /protein_id="HYE14987.1"
                     /translation="MPTSFMENYRAKHRHPLNRLTHSVGIPMIVVSLPLFFYDWRWAL
                     GLFIVGWAFQFLGHAIEGNSPAFFRNPVYLIIGPVWLLRKALAAVGLARERGEAGGKR
                     AS"
     gene            complement(4218..4565)
                     /locus_tag="VD968_11150"
     CDS             complement(4218..4565)
                     /locus_tag="VD968_11150"
                     /inference="COORDINATES: protein motif:HMM:NF014662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HYE14988.1"
                     /translation="MSTIPQQEIYRLLADAEERGERVAVATVAHTRGSTPQRRGAKML
                     FFESGSTAGTVGGGCIEAEVWAEAREALRTGRPALHRFSLTAEEASEEGMVCGGTMDI
                     FIDVWGGEGSAGG"
     gene            complement(4588..5367)
                     /locus_tag="VD968_11155"
     CDS             complement(4588..5367)
                     /locus_tag="VD968_11155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14989.1"
                     /translation="MRKFSARGSGVAAASLLLLFVCQSDGLSQRRRTSRRVTNPVRTQ
                     PAPAQPASSEPALVSTADEQQEEGPRRTQPRTRRGQQQAAEQEQLRGTVDRLSTQVEQ
                     LSDELSRMKTDQRALFDLERLTRAEQRAEALRAQLRDVTDKEFQYQERLSQINDELEP
                     DAIQRRAALVGTLNPGAVRDSIQRSLERERDRVQRQLEMLSNSRARLESAVASAEQEV
                     ERLRQRVDAADQEQANTGAPTPATPAPSPTPEPTPAEPPNE"
     gene            complement(5466..6320)
                     /gene="nadC"
                     /locus_tag="VD968_11160"
     CDS             complement(5466..6320)
                     /gene="nadC"
                     /locus_tag="VD968_11160"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HYE14990.1"
                     /translation="MNWFDEGALFSQIGAFLQEDMGRGDITTQSVVMRSQSAKGRFIA
                     KEPMVIAGLEVAEYVFSTLDSQQQLEAFVADGDEVEAGKVIARARGFADVLLAGERLA
                     LNLMQRLSGIATLTRQYVRAVEGTGAQIVDTRKTTPGLRMLEKYAVLTGGARNHRFGL
                     DDGVLIKDNHVALAGGVATAVERARKAVGHLHKVEVEVTTEAEMREAIESGADILLLD
                     NRTPEETRRLVELARSLAPDVMLESSGGITLENVRAYAEAGVDLISVGALTHSARAMD
                     ISFKIQPA"
     gene            complement(6317..>7569)
                     /locus_tag="VD968_11165"
     CDS             complement(6317..>7569)
                     /locus_tag="VD968_11165"
                     /inference="COORDINATES: protein motif:HMM:NF019869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HYE14991.1"
                     /translation="QRMSKTKANGIDPLEVFEKFGVDATRLVLASVGSTDTRWNDNQV
                     ESYRNFANKIWNAARFCLMNSEGARVGEGFEGDPKTWALHDRWITSRLNRTARDVARA
                     VEQYQFHEAVYALYHFFWDDFCDWYIELSKSEVTAAEASPERDAARSRTLTVLEQALR
                     LLHPFMPYITEELWQRLPGVGSQLLHPAYAHAEPTVMLAAYPRAEESLIDERAESEMQ
                     AVIELVSRVRNIRTELSIKPGETLPRIFIGTPDRSMRLVFADGARQIARLTRASKIFV
                     ADQLEKLSQARDASSSGNGGSSSQAGGAELFASGGEGGVPILDDPEGQSIPRASARAA
                     LAGGAEVAVPLEGLIDFAQERARLVKERSKLQAEGEKLEKQLANPQFVERAPAEKVAE
                     LRERAADIARRVEALRQMREALGE"
BASE COUNT         1203 a         2654 c         2579 g         1133 t
ORIGIN      
        1 tcgacgcccg gccgcctagc cccgccccca agacgcgcgc gccggcctgc gcgcgcgctt
       61 ccgaacgccg cgcgccgcca aacgacgccc gctcggccgc cagtgagccc cggcgcggcg
      121 ggcacgagtc tttcctgtca actctagccc ctacggaggt gggcgaacac tatgaagaga
      181 accttcctgc tactttcagc cgcctgctta ctcgccgccc tgtcagtctc ggccgccgcg
      241 cagaccgccg gcccgcccaa ggtcttcctc ttcgagcgcg aggagttgaa gcccggcgcg
      301 ttcgacgcgc acctgcgcga ggcgaacaac ttcgcgcgca tgctcgcgca cgccaggaag
      361 gcgggcgagc ccgcttacgt gcgcctcggc atgttcccgg tcgccggcaa ctacaacgag
      421 gtcttctacg cctacccctt caactcgctc gaacagtggg cgcagagcca gcgcgacatc
      481 cagcgctgga tgagcacgcc ggggccgatg aggacgtact tcgagagcat cgcggggccg
      541 cagcgcccgg ccgaagacct ccacacctca gtccgctcga tggtcgccgt ctaccgcccg
      601 gagctgagcc tcaacccgcg ccagtcgctc gcgaaggcgc gctacgtctc gctctcgacc
      661 atgcgcgtta agatgggcca ctacggcgac ttcatgaagc tcgcgggcat gtacaccgac
      721 gcgatgaagc ggatgaaggg cgaccaccac tgggccatgt acgaggtggt gggcggcgcg
      781 cccgagggca ccttcctcat cctctcctcg atggagaagc tggccgagat ggacgcgatg
      841 atggccaacg cctcggagtt cccgaaggcg atgggcgaca agctcgacga cttcgagaag
      901 ctcatggcgg cctccatcga gtcaatggcg acgaacatct acgcaataaa cggccggatg
      961 agcagcgtgc ctgccgagta catggcggcc gacccggcct tctggtcaca ggagttgccc
     1021 gcccctccca cgtcaacgac ggcgacagcc tcgaagaagc ggcagaagta aaaggacgga
     1081 aggcgggagg cggtcaagac gcgcgtcaga cgttcttgac cgcctcccgc ctactgcctt
     1141 cagcctcctg tttttacagc cctctcagcc gcgggttgag ggcgccggtg acgaccgcga
     1201 agagggcgac gacgaggccg cacgcggcga gcgtcggctg cgggccgaag cgctctgccg
     1261 cggcgccggc gaggaagctg ccgaccggca tagtgccgat gaaggtgagt atccacatgc
     1321 tcatcacgcg cccgcgcatc tcgtccgaga cgagttgttg caagagcgtg ttgctcacgg
     1381 cgaagaagct gaccatcgtg aagcccacgc agaagagtag cggcacggcg agcgccgggc
     1441 tcgaagccgt cccgaagccc acgatgctcg ccccgcccgc gaaggagctt gcgagcgcga
     1501 accagccttt ccgcctgaag tcgccgaggt aggccagcat gagcgacccg gcgagcgcgc
     1561 ccgcgcccgc cgtccccatc aaaagcgaaa ggccagcctc gccccagccg taaatgtttt
     1621 tcgcgaagag cgggacgagg acgaggtacg gcgcgccgaa gaggctcacg gccgtcgagc
     1681 agacgagcag cagccgcacc atctggtggc cgcgcatgta gcggaagccg ccggccagat
     1741 cgcgcagcag ggagcgcacg cccttcggcg agcccgcctt cgcaggcaca ccgggcgcgc
     1801 cgggcctcgc cggcatacgc acgagcgaga gcgcgacgat gatggcgacg aaggagaggc
     1861 cgttcaggag gaagcagccc gccacgccca ccagccccat cgcgagcccc gctagaagag
     1921 gcccgacgac gcgcgagaag tggaactgaa cggagcttag ggcgattgcg ttcgcgaggt
     1981 cgtggcgctc gactaagtca acggttatcg cctggtacga aggccccgcc actgagaagc
     2041 agcagcccgt cacgaaggag agcagcagta tcatccagac gtccgccgcc tccccgacca
     2101 cgcccgcgcg caccagcgcc gccaaggtca gggccgaagc gcccgcgccc acctgcgcga
     2161 gcaggagcag ccgcttgcgg tctaactggt cggcgaacac cccggccggg agcgtcagca
     2221 gaaggcccgg caccgtggcc gcgaacgtgt caacgccgag ccagaaggcc gagtttgtta
     2281 gctggagcac gagccagctc tgcgccacgg tctgcatcca cgtcccggag ttcgagagga
     2341 acgcgccggc ccagaacagt cggaagttgc ggtgcgagag cgcgcggaac atctcgcccg
     2401 cacgccccgc cctgcgcccc gcatcgcccc ccgcagccgc catgaccttg atagaagtgc
     2461 cggtaaaaat gaatgatgca cggccgcacg ccccgcgccg ccgccgcgct taaagatgcc
     2521 tgcgccggag gaaaaccgca aggagcgaag atgttgagcg aacgtatgtc gaggcgcgag
     2581 ccgcccgtgc agaacggctt ccgactgcgc ggggcggggt ctcgcgcgta gaggcactct
     2641 cggacggcgt gatagccttc gccatcacgc tgctctactg gcacgcctac cgcaaacgtg
     2701 aagccctgga gcttaacgag ttggagtcgc acggcacgcg ggcgcagtcg caggagaacg
     2761 ccctgatggt ctgcgtcggg ctgttctaga gtggcgcggc gctcgcgcgc tggcgccacg
     2821 ccccgctcat cgccggcatg tcctactggc tcatcggccc cgtccagttc ctacacggct
     2881 acctcacagg caagcgccgc aggcgcatcg cagagcgcgc cgcgtcgcga acccgcgagc
     2941 ccgccgccgc gtgattaaca atccggggag tgacgtgggg gtttactctg taggcttctt
     3001 actcgcgcct ccgccaatcg gagaggggcg cgccggtgcc gcctcggcgg tgggcgacga
     3061 tctcggcgag gatggagagg gcgacctcct cgggcgagac ggcgccgatg tcaaggccga
     3121 cgggcgcgcg aacctgccgc agagcctctt cgtcgaagcc cgcctctctc aatcgcccga
     3181 gcacgatgtt ggtgcggcgc cggctgccta tcatgccgac gtagtcgggt cgggcggcga
     3241 gcacggcccg catgcactcc tcgtcctcgt tgtggccgcg cgtgacgacc gcgacgtaga
     3301 tgccgcgccc gccgcccact gcgcgcgcga cggccccgcc ccagccaccc gacgccgcca
     3361 caagctctac gccttcatcg gggaagcgcg cgcgcgcgac gaactcggcg cggtcgtcta
     3421 tgagagtgac gccgtagccg attgagcgcg cgagccgcgc gagagaggcg ccgacgtggc
     3481 ccgctccgca cacgacgacg cgcggctccg cctccacgcg ctccaggaga acgcgcgagc
     3541 cgcgccactc ttccaggccc ggcgcgaact cttcgactga aaaggtgcgc gcctctgcgc
     3601 gcgaggcgag gaaggcgcgg gcgtgcgcgg cgagcgccgc gtcgagcgcc gcgtcgccgg
     3661 tcgtgccggt ctgccggccc gcttcttcca gaaggatttt cgcgccgacc gagcgcggcg
     3721 cttcgatgag tgtggcgagc gcggcaaggg cgccttcgga gagcacctgg gccgctcggc
     3781 gcgcgacctt tcccgcgcgc ggacggcccg cgccttcgcc cgctgtcgcc atcgcccgct
     3841 cagcttgcgc gcttcccgcc ggcctcgccc cgctcgcgcg cgagcccgac ggcggccagg
     3901 gccttacgca ggagccaaac ggggccgatg atgagataga cggggttgcg gaagaaggcg
     3961 gggctgttgc cctcgattgc gtggccgagg aactggaagg cccagccgac gatgaagagg
     4021 ccgagcgccc accgccagtc gtagaagaag agagggaggc tgacgacgat catgggaatc
     4081 ccgaccgagt gcgtcaggcg gttgagcggg tggcggtgct tcgccctgta gttctccatg
     4141 aaggaagtag gcatggcgac ctccgaaagt tgtgcgcgcg agggacgagc aaggatactt
     4201 tcaaactcgc ccgcttgtca cccgccggcg ctcccctccc cgccccaaac gtctatgaat
     4261 atatccatcg tcccgccgca gaccatgccc tcctcgctcg cctcctcggc cgttaggctg
     4321 aagcggtgca gggccgggcg gcccgtgcgc agcgcctcgc gcgcctcggc ccatacctcc
     4381 gcctctatgc agccgccccc cacggtgcct gccgtcgagc ccgactcgaa gaagagcatc
     4441 ttcgcgccgc gccgctgcgg ggtggagccg cgcgtgtgcg cgaccgtcgc gaccgcgacg
     4501 cgctcgccgc gctcctcggc gtctgcgagc agtctgtaga tttcctgctg cgggatcgtt
     4561 gacatgcgag gggtaccccg ccggccttta ctcgttcggg ggctcggcgg gcgtcggctc
     4621 cggcgtcggc gaaggcgcgg gcgtggccgg cgtcggcgct ccggtgttgg cctgctcctg
     4681 gtcggcggcg tcaacgcgct ggcgcaggcg ctcgacctcc tgctcggcgc tcgcgaccgc
     4741 ggactcgagc cgggcgcggc tgttcgagag catctcgagc tgcctctgca cgcggtcgcg
     4801 ctcgcgctct aagctgcgct gtatcgagtc gcgcacggcg ccggggttta gggtgccgac
     4861 gagcgcggcg cggcgctgta tggcgtccgg ctcgagctcg tcgtttatct gcgagagccg
     4921 ctcctggtac tggaactcct tgtcggtcac gtcgcggagc tgggcgcgca gcgcctcggc
     4981 gcgctgctcg gcgcgcgtca ggcgctccag gtcgaagagg gcgcgctggt ctgtcttcat
     5041 gcgcgaaagc tcgtcggaga gctgctcgac ctgcgtggag aggcggtcaa ccgtgccgcg
     5101 gagctgctcc tgctcggccg cctgctgctg gccgcggcgc gtgcgaggct gcgtgcggcg
     5161 cggcccctct tcctgctgct cgtctgccgt gctgacgagc gcgggctcgg acgacgcggg
     5221 ctgcgccggc gcgggctgcg tgcgcacggg gttcgtgacg cggcgcgagg tgcggcggcg
     5281 ctgcgagagg ccgtcgctct ggcacacgaa aagcagaagc agggacgccg ccgcgacccc
     5341 cgaaccgcga gccgaaaact tcctcatcac gaaacctccc tccaaaacag tgccggacaa
     5401 aacttcgatg ccgcgcgcgc cggccgggat tacttacacg cgccgcacgc gcgcgcggtt
     5461 cccgtttacg cgggctgaat cttgaaactg atgtccatgg cgcgcgccga gtgcgtgagc
     5521 gcgccgacgc ttatcaggtc aacgccggcc tcggcgtagg cgcgcacgtt ctcgagcgtt
     5581 atgccgcccg aagattcgag catcacgtcg ggcgcgagcg agcgcgccag ctcgacgagc
     5641 ctgcgcgtct cctcgggcgt gcggttgtcg agcaggagaa tgtccgcgcc gctctcaatc
     5701 gcctcgcgca tctcggcctc ggtcgtcacc tcgacctcga ccttgtgcag gtggccgacg
     5761 gccttgcgcg cgcgctcgac ggccgtcgcc actccgcccg cgagcgccac gtggttgtcc
     5821 ttgatgagca cgccgtcgtc gaggccgaag cggtggttgc gcgccccgcc cgtcaggacg
     5881 gcgtacttct cgagcatgcg gaggcccggc gtggtcttgc gcgtgtcaac gatctgcgcg
     5941 cccgtgcctt cgacggcgcg gacgtactgc cgcgtgagcg tcgctatgcc ggagagcctt
     6001 tgcatcaggt tgagcgccag ccgctctccc gcgagcagca cgtcggcgaa gccgcgcgcg
     6061 cgggcgatga ccttaccggc ctcgacctcg tcgccgtcgg cgacgaaggc ttcgagctgc
     6121 tgctgcgagt cgagcgtgga gaatacgtac tcggccacct cgaggccggc gatgaccatc
     6181 ggctccttgg cgatgaagcg ccccttcgcg ctctggctgc gcatcacgac ggactgcgtc
     6241 gtgatgtcgc cgcgccccat gtcttcctgg aggaacgcgc ctatctggga gaagagcgcg
     6301 ccctcgtcga accagttcat tccccgagcg cctcccgcat ctgccggagc gcctcgacgc
     6361 gccgcgcgat gtcggccgcg cgctctcgca gctccgcgac cttctcggcc ggggcgcgct
     6421 cgacgaactg cgggttagcc aactgcttct caagcttctc gccttcggct tgcagcttcg
     6481 accgttcctt gaccagacgc gcgcgctcct gcgcgaagtc aatcaaccct tcgagcggca
     6541 cggccacttc agcgccgcct gcgagcgccg cacgcgccga cgcgcgcggg atgctctgtc
     6601 cttcggggtc gtcgaggatg ggcaccccgc cttcgccgcc tgaggcgaac aactccgcgc
     6661 ccccggcctg cgacgacgag ccgccgttgc ctgacgacga agcgtcgcgc gcctgcgaaa
     6721 gtttttcgag ctggtcggcg acgaaaatct tagaggcgcg cgtgagccgc gctatctgcc
     6781 gcgcgccgtc ggcgaagacg aggcgcatcg agcggtcggg cgtgccgatg aagatgcgcg
     6841 gcaaggtctc gcccggcttg atgctcaact ccgtgcgtat gttgcgcacg cgagagacga
     6901 gttcgatgac ggcctgcatt tctgactcgg cgcgctcgtc aatcagagac tcttcggccc
     6961 gcgggtaggc ggcgagcatg acggtcggct cggcgtgcgc gtaggcgggg tgcagcagtt
     7021 gagagccgac gccgggaagg cgctgccaga gttcttcggt gatgtaaggc atgaacgggt
     7081 gaaggagacg caacgcctgt tcgagcacgg tcaacgtgcg cgagcgcgcc gcgtcgcgct
     7141 cggggctcgc ctcggccgcc gtcacctccg acttcgaaag ctctatgtac cagtcgcaga
     7201 agtcgtccca gaagaaatgg tagagcgcgt agacggcctc gtggaactgg tactgttcga
     7261 cggcgcgcgc cacgtcgcgg gccgtcctgt tgagccgcga cgtaatccag cggtcgtgca
     7321 gcgcccacgt cttcgggtcg ccctcgaatc cttcgccgac gcgcgcgccc tcggagttca
     7381 tcaggcagaa gcgcgcggcg ttccagattt tgttggcgaa gtttcggtaa gactcgacct
     7441 ggttgtcgtt ccagcgcgtg tcggtcgagc cgacggaggc gaggacgagg cgggtggcgt
     7501 ccacgccgaa cttctcgaac acttcgagcg ggtctatgcc gttggccttg gtcttcgaca
     7561 tccgctggc
//
LOCUS       DASPKR010000415         9122 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_965323, whole genome shotgun sequence.
ACCESSION   DASPKR010000415 DASPKR010000000
VERSION     DASPKR010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9122)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9122
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_965323"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            325..819
                     /locus_tag="VD968_11170"
     CDS             325..819
                     /locus_tag="VD968_11170"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYE14992.1"
                     /translation="MKRFAAPSALLLTILLAVSAPQATAQSAPAPEDLSRTLAALDGA
                     LFDSFNRCDLEKFASFFAEDVEFYHDKGGLTLSSKSLVESVRNNICGKVRREVVAGSV
                     EAHPIPGYGGVQMGAHRFYELGAKPGAGPVGEAKFIHLWQHRDGAWKITRVISYAHGP
                     APKG"
     gene            1065..2108
                     /locus_tag="VD968_11175"
     CDS             1065..2108
                     /locus_tag="VD968_11175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14993.1"
                     /translation="MPTHTGENVAHHGVSQRPQGVPPPRRGGRAQPRMPSTVGYMAVS
                     VGLSFALFLAIWFLLRADGDDAPWIPAGLAAGFVILIAAGTREIVMRRAWSRYTREME
                     MTMGAGELQPRPVILPKPTTSSMAGMQSAVASLRALQQRLAEFDGAGVSPEAHMEAYR
                     LCEQCLASTEEVLRSPGGPAEMRVALRSGQERVRAYRKKHLLGWARGESTRLTLEAQR
                     RVRLSDKIETAQRALEVLGEAMRLYPEEPELRESATVVRNFIASVKVGQWVEMAERAA
                     FRGKYARAIARYRDALFYLSRADMGEDARSEAASRIQREIEMLRARLATTDGDSAAGG
                     APAAGRRPRREQE"
     gene            2130..2390
                     /locus_tag="VD968_11180"
     CDS             2130..2390
                     /locus_tag="VD968_11180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14994.1"
                     /translation="MIAQRCPKCESSRVRRGYTDTALLLRLVGVYRLLCDNCNLQFVG
                     LAVPGTVPPRGSHRRRKRVSHSHGHNRHQRDGGAHGSKAGKG"
     gene            2481..3539
                     /locus_tag="VD968_11185"
     CDS             2481..3539
                     /locus_tag="VD968_11185"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HYE14995.1"
                     /translation="MRVKSLSLVLAVFACAAQALAQGGSPAPPQSGAPSAGAAGGSSL
                     DGMGVKKYLLGPGDVLDLRVFNEPQFNGPLVVNDEGKVEVPFIEHPVPALCRTDREIK
                     QDIVEALSKFLNKPQVSLRVAEMKSRPPAVVFGAVRSPTRVLMQRRARLLELLAQSGG
                     VTEAAGGDIQIFHTEPVMCPEPEVDVAKPINSYAPADPTEVSYDVYSLTALKDGKNEA
                     NPYIRPGDIVIVQEAQPVFITGAVMAPQGLYLRESTRMLTQAIAQVGGLRKEAKGSGV
                     VIFRRKPGSDQAEPLRVNLSDIRSGKAKDIPLQPYDIVEVPDNTGGVKGVLKGVLLGG
                     GIGAMTGTFANLPLRVLY"
     gene            3684..4016
                     /locus_tag="VD968_11190"
     CDS             3684..4016
                     /locus_tag="VD968_11190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE14996.1"
                     /translation="MSRNVNRAAASRARKRKSRMSLLYVALAAAVVVVLLVLEQVALL
                     YILSTLAVSALLIIVAFADIRGAGRRSAEAPPADDSAAIGDRTAKVAPATSFGQTAPR
                     AARAKRGR"
     gene            4192..6375
                     /locus_tag="VD968_11195"
     CDS             4192..6375
                     /locus_tag="VD968_11195"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF012630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031012 - extracellular matrix [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HYE14997.1"
                     /translation="MRSAATLLLLAALLSAPAGPALSYTLQLNASAAVQFRWPTRTIP
                     FALSTSLNNPPPNVRATGEEVVAAARRALARWAEAADVEFVITTSSLQAVSPVGSPDG
                     VNLITVSQTPGIAFNDPNQTGGVRVFTDGAGNITEADIAVNPGAPFSTDGSFVPFASD
                     STFEGSGDTFDLESTFLHEIGHALGLEHSGIVGSVMQPRQARNGTYGLPALQRRSLAS
                     DDRAGARAIYGPAAGLGELRGTIRNAGGGPVFGAHVWAEEISTGRAVAGNVTLQNGSY
                     QIRALPPGDYRLVVEPLNGPVFASQVASRTRPGGSPGAYAGLQDGQAVQRTSDGSTAT
                     VVADSVTNFDVSLEGLQAILNPAFVGTRDDLGSSLSQVSLPVAPGSTVNVLVGGENVH
                     TVEADGVQINSPYFTINRASFLKLNFGNVQVLSFDVSVSALAAPGDYSVRLAAAASGE
                     VAYLSGALTVEPPNAVPAGTNLLDGTAFFVAQHYRDFLSREPDPAGLAFWSNEVEGCG
                     SNLQCREVKRINVSAAFFLSIEFQETGYFVYRVYQAAFGDLPGRPVPVRAQQFFPAAQ
                     QIGRGVVVGVGDWQARLEANKRQFLLGLVGSAEFLARHPPTESPAQFVDSLNANAGGV
                     LSQAERDQLVAELSANNTAAGRADVLRRVADDEDLVRQEFNEAFVLMQYFGYLRRNPD
                     DFPDSDFAGFNFWLAKLEQFGGNFLAAEMVKAFLESVEYRERFGQ"
     gene            complement(6508..8577)
                     /locus_tag="VD968_11200"
     CDS             complement(6508..8577)
                     /locus_tag="VD968_11200"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HYE14998.1"
                     /translation="MLRRITACLLLVSLTVIYLSPLATLAAAPKKGGQAEARRSKLAP
                     ELSSAADAGEMVGVIIQTKGRPTADHDSAVASKGGKKGAAFDSLDAMTAIVPKSAVAE
                     LAAREDVAYVSPNRRVSAQMSVTREATGAALAQAGAAGAPGVTGKGVGIAIIDSGISA
                     SHPDFAGRNGKSRIVASVDFSNPGSVQGDGIIWTGGILMSDGILMSDGTDANGHGTGV
                     AGVAAGSGAASAGYAANYKGMAPEANLIDLKALDATGAGSTSAVLAAVNWAIQNRNLY
                     NIRVLNMSLGTPARESWRDDPLCNAVARAVEAGIVVVASAGNHGRTEEVVGHDADGNP
                     VYQPLFRTINSPGNSPHAITVGATDTRSTARRSDDRMAQFSSKGPTAVDGLAKPDLVA
                     PGRGVVAPMSQDGPQLAAARPDRVVTPTANALPNAYYTYYGTSFSAPAVAGAVALMIE
                     ANKSLTPALVKAALLRTANPLPVSLFGSKAQSVLTQGAGQLNAAAAVRLAGAVVPNAD
                     KLKAGDAILRGGLTLGSVSGPVQIGGESVAQAGRVLYSNGVLFRESPVLLNGVAVADG
                     ILMSDGIIFVDGTVLGSGILMSDGILMSDGIIWTGGILMSDGILMSDGILMSDGILMS
                     DGILMSDGILMSDGILLSDGILMSDGILMSDGILMSDGILMSDGIIWTGGILMSDGIL
                     MSDVAAL"
BASE COUNT         1468 a         3162 c         3053 g         1439 t
ORIGIN      
        1 gcgttgaccc tttagacccc ttgcgcgcga acccttcgcc tgaagaacct tgcgaggaag
       61 gacgtgcgct tgacctgcgt gaaactctca agccgaaaac gccccggcag tatagcagaa
      121 gcgcgccggc ctgcaataaa cgctgaaaac agcggcccgg ccggcgcgcg cctgtccttg
      181 agtagttaat gaggaggcta ccgagcgaag ccgcgggcgt tgacgagagc gcccgcgggg
      241 tgagccggct tcggggaaca ttccggcaaa cgtccccgta aagcgagggg gaatgcttac
      301 atcggacaaa ggcggtatca agtgatgaaa cgtttcgccg cgccgagcgc tctgctgctc
      361 acaattcttc tggccgtgtc ggccccgcag gcgacggccc agagcgcgcc cgcccctgaa
      421 gacctctcgc gcacgctcgc cgcgctcgac ggcgcgctct tcgactcgtt caaccgctgc
      481 gacctcgaga agttcgcatc gttcttcgcc gaggacgttg agttttatca cgacaagggc
      541 gggcttaccc tttcgagcaa gagcctggtc gagagcgtca ggaacaacat ctgcggcaag
      601 gtgcgaaggg aagtggtcgc cgggtcagtc gaggcgcacc ccatacccgg ctacggcggc
      661 gtacagatgg gcgcccaccg cttctacgag ctgggcgcga aaccgggcgc agggcctgtg
      721 ggcgaggcga agttcataca cctttggcag cacagggacg gcgcgtggaa gattacgcgc
      781 gtaatcagct acgcgcacgg gcctgcgccg aagggctgac cgcgcgttct gtatcgagcg
      841 aaagaatgac ggggcggagg ggcgcgcgaa ctgacgattt gcgcgcccct ccgcccttct
      901 cgcctctagc ttccggcaac ttctaaggct ataattccga atccgtcgcg ggcgaccagc
      961 aagcggccac gtcgccaccc cctacagcag tcatgcgccg ctcggccaca cggggcgcgg
     1021 cgcgggccgg aagagtcgag cgccggcctc cggaggcgaa ccctttgccc acacacacag
     1081 gcgagaacgt tgctcaccac ggcgtgagcc agcggccgca gggcgtcccc ccgccgcgca
     1141 ggggcgggcg cgcgcagccg cgcatgccct cgacggtcgg ctacatggcc gtctccgtgg
     1201 gcctgtcgtt cgcgctcttc ctcgccatct ggttcctgct gcgggccgac ggcgacgacg
     1261 cgccctggat acctgcgggg ctcgcggccg gcttcgtcat actgatagca gccggcacgc
     1321 gcgagatagt gatgcggcgc gcgtggtcgc gctacacgcg cgagatggag atgacgatgg
     1381 gcgcgggcga attgcagccg cgccccgtca tcttgcccaa gcctacgacg agcagcatgg
     1441 cgggcatgca gtcggccgtg gcctcgctgc gcgcgctaca gcagcgcctc gccgaattcg
     1501 acggggccgg cgtctcgccc gaggcgcaca tggaggcgta ccgtttgtgc gagcagtgcc
     1561 tggcaagcac cgaggaggtt ctgcgctcgc cgggcggccc cgccgagatg cgcgtggcgc
     1621 taaggtcggg ccaggagcgc gtgcgcgcct acaggaagaa gcacctgctc ggctgggcgc
     1681 gcggcgagag cacgcgcctg acgctcgagg cgcagcgccg cgtccggctc tccgacaaga
     1741 tagagacggc gcagcgcgcc ctcgaagttc tgggcgaggc gatgaggctc tacccggaag
     1801 agccggagct gagggagtcg gcgacggtcg tgcgcaactt catcgcgtcg gtcaaggtcg
     1861 ggcagtgggt cgagatggcc gagcgcgcgg ccttccgcgg caagtacgcg cgggcgattg
     1921 cgcgctaccg cgacgcgctc ttctacctct cccgcgccga catgggcgag gacgcgcgct
     1981 cggaggccgc ctcgcgcata cagcgcgaga tagagatgct tcgagcgcga ctggctacca
     2041 cagacggcga cagcgccgcg gggggcgccc cggccgcggg ccgccgcccg cgccgcgagc
     2101 aagaataacc agacgggccg gaggccggtt tgatagccca acgctgccca aagtgtgaga
     2161 gttcgcgcgt ccgccgcggc tacacggaca cggcgctgct gctgcgcctc gttggcgttt
     2221 accggctgct gtgcgacaat tgcaaccttc agttcgtagg gttagcagtc cccggcaccg
     2281 tcccgccgcg cggtagccac cggaggcgca agcgcgtctc gcactcgcac gggcataacc
     2341 gccaccaacg cgacgggggg gcgcacggct cgaaggccgg caagggttga gggccgaaat
     2401 ttttcgagcg cgcgcggggc tgcccggcgc gcgccgcggg cttcaaggtc tcggcctctg
     2461 atttgaaggg aagggaagtt atgagagtta aaagcctgtc tctagtgctc gccgtcttcg
     2521 cctgcgccgc gcaggcgctc gcgcagggcg gctcccccgc gccgccgcag tcgggcgcgc
     2581 cttcggccgg cgcggccggg ggctcgtcgc tcgacggcat gggcgtcaag aagtacctgc
     2641 tcggccccgg cgacgtgctg gatctgcgcg tcttcaacga gccgcagttc aacggcccgc
     2701 tcgtcgtcaa cgacgagggt aaggtcgagg tgcctttcat cgagcacccc gtcccggcgc
     2761 tgtgccgcac cgaccgcgag atcaagcagg acatcgtcga ggcgctctcg aagttcctca
     2821 acaagccgca ggtcagcctg cgcgtcgccg agatgaagag ccggccgccg gccgtcgtct
     2881 tcggcgccgt ccgtagcccc acgcgcgtgc tcatgcagcg cagggcgcgc ctgcttgagc
     2941 tgctcgcgca gtccggcggc gtcacagagg ccgcgggcgg cgacatacag attttccaca
     3001 cggagcccgt catgtgcccg gagccggagg ttgacgtggc aaagcccatc aactcttacg
     3061 cgccggccga cccgaccgag gtcagctacg acgtgtacag cctgacggcg ctcaaggacg
     3121 gcaagaacga ggccaacccc tacatacgcc ccggcgacat cgtcatcgtg caggaggcgc
     3181 agcccgtctt catcaccggc gccgtgatgg ccccgcaggg cctgtacctg cgcgagagca
     3241 cgcgcatgct cacgcaggcc atcgcgcagg tcgggggctt gaggaaggag gcgaagggca
     3301 gcggcgtagt catcttccgg cgcaagcccg ggagcgacca ggccgagccg ctgcgcgtca
     3361 acctgagcga catacgcagc ggcaaggcga aggacatacc gctccagcct tacgacatag
     3421 tcgaagtgcc cgacaacacg ggcggcgtaa agggcgtgct caagggcgtg ctgctcggcg
     3481 gcggcatagg cgccatgacg ggcacgttcg ctaacctgcc gctgcgcgtg ctctactgag
     3541 gcgcgccgaa tctgaggcgc ggagggccgg ccgctaggct gtagcgggcc ggccctttta
     3601 ccgcccgcgt tcgccgcgcc gcccgcctgt gtggtaaatt aaccttttcg ttccgagcct
     3661 tgattttcgg gggaagtggt ctgatgagta gaaacgtgaa cagggcggcc gcctcgcgcg
     3721 cgcgaaagag gaagagccgc atgtcgcttc tgtacgtggc gctggccgcg gccgtggtcg
     3781 tcgtgctgct ggtcttggag caggtggcgc tgctctacat cctctcgacg ctggcggtat
     3841 cagccctgct catcatcgtc gccttcgccg acataagagg cgccgggcgg cggtcggcag
     3901 aagccccgcc ggccgacgac tcggccgcca tcggcgacag gactgcgaag gtcgcgcccg
     3961 cgacctcgtt cggccagacg gcgccccgcg ccgcccgcgc caagcgcggc aggtaagccc
     4021 ccggcgccgg ccccaccgcg gatataaagt ttgaagtggc cgcggccgtc ttgctatgat
     4081 gtggcggccg cggccgcgcg gcactcgcgc acggccgagg cgccgtcgcc gataacgctc
     4141 cccgctgacc ttaccgccgt ccccccgaag tctgccgcca atagagccct tatgcgttcg
     4201 gccgcaaccc tcctgcttct cgcggcgctc ctgtcggcgc cggccggccc cgcgctctcc
     4261 tacacgctgc aactcaacgc ctcggccgcc gtgcagttcc gctggccgac gcgcaccatc
     4321 cccttcgcgc tctcgacctc gctcaataac ccgccgccca acgtgcgcgc gacgggcgag
     4381 gaggtggtcg cggccgcgcg ccgcgcgctg gcgcgctggg ccgaggccgc cgacgttgag
     4441 ttcgtcatca cgacctcgtc gctacaggcc gtgagccccg tcggctcgcc cgacggcgtg
     4501 aacctcatca cggtctcgca gacgcccggc atagccttca acgaccccaa ccagaccggc
     4561 ggcgtgcgcg tcttcacgga cggcgcgggc aacatcacgg aggccgacat cgccgtaaac
     4621 ccgggcgcgc ccttctcgac cgacggctcg ttcgtcccct tcgcgtcaga ttcgaccttc
     4681 gagggctcgg gcgacacctt cgacttggag tcaaccttcc tgcacgagat aggccacgcg
     4741 ctcggcctag agcactccgg catcgtcggc tccgtcatgc agccccggca ggcgcgcaac
     4801 gggacttacg gcctaccggc gctgcagcgc cgctccctcg cgtcagacga ccgcgcgggc
     4861 gcgcgcgcga tctacggccc cgcggccggc ctcggggagc tgcgcggcac catacgcaac
     4921 gcgggcggag gccccgtctt cggcgcgcac gtctgggcgg aggaaatctc gaccggccgc
     4981 gccgtcgccg gcaacgtgac cttgcagaac ggctcgtacc agataagggc cctgccgccg
     5041 ggcgactacc ggctcgtcgt cgagcccttg aacggccccg tattcgcctc gcaggtcgcg
     5101 agccgcacgc ggcccggcgg ctcgcccggc gcctacgccg gcctacagga cgggcaggcc
     5161 gttcagcgaa cctcggacgg ctcgacggcg acggtggtcg ccgactccgt gacgaacttc
     5221 gacgtgagcc tcgaagggct acaggccatc ctcaacccgg ccttcgtagg cacacgggac
     5281 gacctcggct cttcgctctc gcaggtctct ctgcccgtcg cgccgggctc gacggtcaac
     5341 gtgctcgtcg gcggcgagaa cgtccacacg gtcgaggcag acggcgtgca gataaactcg
     5401 ccctacttca cgatcaaccg cgcgagcttc ctcaagctca acttcgggaa cgtgcaggtc
     5461 ttgagcttcg acgtgagcgt gagcgcgctc gccgcgccgg gcgactacag cgtaaggctc
     5521 gcggcggccg cgagcggcga ggtcgcgtac ctctcgggcg cgctcacggt cgagcctccc
     5581 aacgcagtcc cggcaggcac taaccttctt gacggcacgg ccttcttcgt cgcgcagcac
     5641 taccgcgact tcctctcgcg cgagcccgac ccggccggcc tcgcattctg gtcgaacgag
     5701 gtagagggtt gcggctcgaa ccttcagtgc cgcgaggtaa agaggattaa cgtcagcgcc
     5761 gccttcttcc tctcgattga gttccaggag acgggctact tcgtctatcg cgtctatcag
     5821 gccgctttcg gcgacctgcc cggcaggccc gtccccgtgc gcgcgcagca gttcttcccc
     5881 gccgctcagc agatagggcg cggcgtcgtc gtgggcgtgg gcgactggca ggcgcggctc
     5941 gaggcgaaca agcggcagtt cctcctgggc ctggtcggta gcgccgagtt cctcgcgcgc
     6001 caccctccga ccgagagccc tgcgcagttc gttgactccc tcaacgccaa cgccgggggc
     6061 gtgctctcgc aggccgagcg cgaccaactc gtcgcggagc tttcggccaa caacacggcg
     6121 gccggccgcg ccgacgttct gcggcgcgtg gccgacgacg aagacctcgt caggcaggag
     6181 ttcaacgagg cgttcgtgct gatgcaatac ttcggctacc tgcgccgaaa ccctgacgac
     6241 ttccccgact ccgacttcgc cggcttcaac ttctggctcg ccaagctcga acagttcggc
     6301 ggcaacttcc tcgcggccga gatggtcaaa gccttcctcg aatccgtgga gtaccgcgag
     6361 cgcttcgggc agtaacagac taaatccagt ccggcgctaa agactgaagg cgggcgggag
     6421 tggctcttaa ccactcccgc ccgccttcgt gcgcggggcc ggctgttgcg tcggggccga
     6481 cgcccgcggg gccaacggtg cctgagctta gagcgccgcc acgtcgctca tgaggatgcc
     6541 gtcgctcatc aggatgccgc ccgtccagat gatgccgtcg ctcatgagaa tgccgtccga
     6601 catcagtatg ccgtcgctca tcagtatccc gtcgctcatg agaatcccgt cgctcaagag
     6661 aatcccgtcg ctcatcagga ttccgtcaga catcaggatt ccgtcgctca tcaagatgcc
     6721 gtcgctcatg aggattccgt cactcatcag aatcccgtcc gacatcagta tgccgcccgt
     6781 ccagatgatg ccgtccgaca tcaagatgcc gtcgctcatc aggatgccgc tgccgagcac
     6841 cgtgccgtcc acgaagatga tgccgtcgct catcaggatg ccgtcggcga cggcgacgcc
     6901 gttcaggagc acggggctct ctctgaagag gacgccgttg gagtagagca cgcggccggc
     6961 ctgcgcgacc gactcgccgc ctatctggac ggggccgctc acggagccga gcgtcaggcc
     7021 gccgcgcagg atagcgtcgc cggccttgag cttgtcggcg ttcggcacca ccgcgccggc
     7081 caggcggacg gcggcggcgg cgttgagctg gccggcgccc tgcgtcagca cgctctgcgc
     7141 cttgctgccg aagagcgaca cgggcagcgg gttggccgtg cggagcagcg cggccttgac
     7201 gagcgcgggc gtcagagact tgttggcctc gatcatgagc gcgaccgcgc cggcgacggc
     7261 cggggccgag aaggaggtgc cgtagtaggt gtagtaggcg ttcggcaggg cgttcgccgt
     7321 cggcgtcacg acgcggtcgg ggcgggccgc ggcgagctgc gggccgtcct gcgacatcgg
     7381 cgccacgacg ccgcggccgg gggcgacgag gtcgggcttg gcgagcccgt caacggccgt
     7441 cggccccttc gaggagaact gcgccatcct gtcgtcggag cggcgcgcgg tcgagcgcgt
     7501 gtcggtcgcg ccgacggtta tcgcgtgggg gctgttgccg gggctgttga tggtgcggaa
     7561 gagaggttga tagacggggt tgccgtccgc gtcgtggccg actacctctt ccgtgcggcc
     7621 gtggttgccg gcgctggcaa cgacgactat gccggcctca acggcgcgcg cgacggcgtt
     7681 gcagagcggg tcgtcgcgcc aggactcgcg ggccggcgtg ccgaggctca tgttgaggac
     7741 gcgtatgttg taaagattgc ggttctggat tgcccagttg acggcggcca gcacggcgct
     7801 cgtcgagccc gcgcccgtcg cgtcgagcgc cttgaggtca atgaggttcg cctccggcgc
     7861 catgcccttg tagttggccg cgtagcccgc cgaggcggcg ccgctgccgg ccgcgacgcc
     7921 cgcgacgccc gtgccgtggc cgttggcgtc cgtgccgtcg ctcatcagaa tcccgtccga
     7981 catcagtatg ccgcccgtcc agatgatgcc gtcgccctga accgagccgg ggttcgagaa
     8041 gtcaaccgag gccacgatgc gcgacttgcc gttgcggccc gcgaagtcgg ggtgcgaggc
     8101 gctgatgccg ctgtcaataa tggcgatgcc gacgcctttg cccgtgacgc ccggcgcacc
     8161 ggccgcgccc gcctgcgcca gagccgcgcc cgtcgcctcg cgcgtcacgc tcatctgcgc
     8221 cgacaccctg cggttgggcg agacgtatgc gacgtcttcg cgggcggcca actcggccac
     8281 ggccgacttc ggcacgatgg ccgtcatggc gtcgagcgaa tcgaaggccg cgcccttctt
     8341 gccgcccttc gaggcgacgg cgctgtcgtg gtccgcagtc gggcggcctt tagtctggat
     8401 gatgacgcca accatctcgc ctgcgtctgc ggccgaggag agctcgggcg cgagcttcga
     8461 gcggcgcgcc tcggcctgcc cgcccttttt cggggcggcg gcgagcgtcg ccagggggga
     8521 gaggtatatg accgtgaggc tgaccagaag caagcaagct gtgattcgac gcaacatttg
     8581 gggttccttc tttcgtggag tccttctaaa ctctaaagat caggagaccg ttgacaggtt
     8641 tcgcgcccgg ccgtgagtat gagccgggcc gaaggaggtt taggccgcgt aacctacgaa
     8701 acgctgtcaa cgatctgccc ctccctagtt caatagacgt gccacaaaag ccttccctgg
     8761 cgcccgccgc gccccggaac ctaaactaac tatttaaagc cgcttacgcc gcccgccgga
     8821 atctagtcgg acggcccctc ccgacccccg aaatggatac ctcctatcca ccttttgcaa
     8881 tcaaacttgc aaaccccaac tttcccgccc tttccccaca aaaccaacac ccccgcccaa
     8941 ctggatacat cgttaccact gtgtacctac taaccaccac ggggccttgc ccgacaatgg
     9001 ccgcttgccc ggtaatcgct aagtctgccc ggcaatgtgg agtggttaat gaatcagatt
     9061 tctgtcggcg agatatctcc ggccttcgtc ggtgagtaag tagagaacga cgaagccgga
     9121 tt
//
LOCUS       DASPKR010000416        14675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1095005, whole genome shotgun sequence.
ACCESSION   DASPKR010000416 DASPKR010000000
VERSION     DASPKR010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 14675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14675)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14675
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1095005"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            144..992
                     /locus_tag="VD968_11205"
     CDS             144..992
                     /locus_tag="VD968_11205"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HYE14999.1"
                     /translation="MRKTRLFVLAALAAAALLPVSTRAQAQAAAARDSVPTRDMERIN
                     WMEFKEVVPSKVQTVLLPTGTLEPHGVANNGADNTAPAAIARRIAPRVNAMIAPTLPY
                     GITGSMEAYPGAFQITESAYRPFVKQILEGLAKNGFRNIIILNGHGGPQTAVLNSVAA
                     EVAAERRVRTLVINWWSFASDITKQVFGEDGGHAGWNETAFIQAIDPTLVHPERYKDD
                     LATAYPAQGTWSAAPFPSSIGLYQPGQGYPKFDQKKADEYFVKVTDKIASLVSEVIRK
                     WDAAGL"
     gene            1012..2799
                     /locus_tag="VD968_11210"
     CDS             1012..2799
                     /locus_tag="VD968_11210"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HYE15000.1"
                     /translation="MINSLNLRAVARRPPTGEPFAPLARSAFRVLGLAASASRREVNA
                     AADSLRLSLKVGATRSFPADLPALGPLSRDESAVRDAVGRLADPPQRLFERLFWFHAP
                     PPSAHVAANTLTIARAAEDSLARGGDAARHDAALLLLVGLCVADPALREREAWERAFA
                     LWADVVEGEEFWSLLVAADLKGDYEQLATFAEVRELRARAPRLVSEFLAGRAKGWAAR
                     GDFEACGRALEVLRAARLPRPLLDEYEGDILGPVEDEVEGVVSSAFGEMELGKLSASA
                     GSAEAAKDSFNRCWRKFEDDAKPALFRFARTGGVGAASVRRALAHAAAKLCELAAAYR
                     EALRPDEAREVLRQALALAPPGSAALVQVEEDMRASGLAAEEGAEREETYAEEVSREL
                     RARTSPEPKPSAAPASAAGAGGGDTVLGCVMQIAFYAFMVAGCFALDKCGVIKTGRST
                     RYGPSYNLNYNIRPFPQFTPVPFPTLHPFAFMPRMTAEELRREMRRGGVTVVDARERA
                     AYDAGHVPGAVWAPEDRAGSLAGRLRRSRLVVVYGEDENAADRAALKLWVAGPAERKP
                     FVLSGGYLAWSAPEVATPPPSRVAPSPSR"
     gene            2827..3174
                     /locus_tag="VD968_11215"
     CDS             2827..3174
                     /locus_tag="VD968_11215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15001.1"
                     /translation="MSEEMPQTLEVPLAALAELAVECWRLERWAETTRDEASAARARH
                     AARRLAKFLGERGVSFVDLTGRAYEPGLAVEVLDVIRDPGAAGDTIDETVSPVVLWRG
                     SVISHGQVVIRKK"
     gene            3186..5819
                     /locus_tag="VD968_11220"
     CDS             3186..5819
                     /locus_tag="VD968_11220"
                     /inference="COORDINATES: protein motif:HMM:NF012242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HYE15002.1"
                     /translation="MTSMFINFGIDLGTTNSCLAQAAEGGEVRVIQNNDQMNVTPSVV
                     RVLKSGSLMVGRRAYNAAAEDPENVAQEFKRLMGQRYSKLFPASGRSMTPEELSAEVL
                     KSLLADARRRTGEGVRAACITVPAAFTALQCEATARAARLAGLDEHPLLQEPIAAAIA
                     YGAKPGARDQRWMVFDLGGGTLDVAVVSTRDGRLNVLEHRGDNHLGGKDVDRALVQGV
                     LLPFLAERFSLPGADVDARAHTRLARRLTLLAEYAKIELTTAEETIVTLLDLGDDAEG
                     RPIEAEMTLTRARLELELEPLLSRCLRLAEEALEGARMRGADLDRVLLVGGPTQMPRV
                     RAALSERLGAPVDSSLDPMTVVARGAAIYASTVERASPSSTSKPEVSAAGKLSARLAF
                     DPVSAEAQARVAGKLSGGARGEALEVKIDSEGGLWTSGWHTTEGGFFELPLVMQEGQL
                     NRFRLSVRDSRGRALGVEPSEFQIRHGLTISAPPLPHTISVEVARPDGTHELSPVFPR
                     KTLLPAERSVSYRAAHTLRPSEPDTSLAIKLWEGEALTDPQANTWVGNMHVASDLVRR
                     PVPEGAEVQLHIKIDASRLITVEAFIPHLNEHFKDYIYIPQDEEPDYAELLRGVPAEV
                     ESCLARLARVEEFLMGRGLSDEDFDFPEVVYDDGFAPGGDGDSAGFGAEPSAGSGPRA
                     EADRLRREIEDFDLELGGEAAVADEPDRARGVVERMREFRRRVAELERRAGLVASDSG
                     AGLTEMLALDVERTVEAYGTDAQKEKFAALRRELNDAVSRGDARGTRKASAALRSLRG
                     QVLYAQDWFWQDWFDHMSRPGQEFVNASEAARWLEEGRQARASGDRRKLERAVRWLWS
                     LRPLEEQEARRERSARPGLKQ"
     gene            complement(5829..6482)
                     /gene="aat"
                     /locus_tag="VD968_11225"
     CDS             complement(5829..6482)
                     /gene="aat"
                     /locus_tag="VD968_11225"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR00667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HYE15003.1"
                     /translation="MPLIVRFPDPRDATPEGVVAVGGEPGPDFLVEAYANGIFPWPVE
                     GYPLLWFSPPERAVLDFAELHVPRSLARERRRTRLRFTVDAAFGRVIRNCASVARAHE
                     SGTWITPEMIRGYCELHALGRAHSVEAWEGGELAGGIYGVDAGGAFAGESMFHLRPNA
                     SKLALLHLIEHLQSKGLDWLDVQVMTPHMEALGAKLIPREEFLERLARALRRGLKLF"
     gene            6582..6908
                     /locus_tag="VD968_11230"
     CDS             6582..6908
                     /locus_tag="VD968_11230"
                     /inference="COORDINATES: protein motif:HMM:NF014655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HYE15004.1"
                     /translation="MPEREHSFEEEVATETREKLKKPPLYRVVLHNDDFTTMEFVVEV
                     LTRVFNKSEADAFRIMWAVHTQGAGVAGVYTYEVAEMKVERVTQMARAQEFPLLCTVE
                     EEPQGD"
     gene            6947..9196
                     /gene="clpA"
                     /locus_tag="VD968_11235"
     CDS             6947..9196
                     /gene="clpA"
                     /locus_tag="VD968_11235"
                     /inference="COORDINATES: protein motif:HMM:TIGR02639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0043335 - protein unfolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HYE15005.1"
                     /translation="MITKELQGTLNFAATEAIKRRHEYVTLEHLLYALLHDATAGKVL
                     RACGARVEALASELETFFDEKMERVPQASELLPEYTAAFQRVVEYALLQAEGSGQREV
                     DGGNVLAALYQQPNSHAVYLLKKQGVTRLDILNYLAHGITKSGAAPGGFATEGAEDEE
                     QPVRDPLAAFTTNLVESAAEGRIDPLIGREPEVARTIQVLCRRRKNNPIYVGDPGVGK
                     TAIAEGLALKIHRGEVPEVLKGAEVYSLDMGALLAGTKYRGEFEQRLKAVIAALKKKP
                     NVVLFIDEIHTIVGAGAVSGGSMDASNIIKPVLASGEIRCIGSTTYPEYKAAFERDRA
                     LARRFQKIEVGEPSLEETVEILRGLKSYYEQHHGVSYSDEALGAAAELSAKHIHERFL
                     PDKAIDVIDEAGAMVRLMPAEERPAEVGTHEIEGVVARMAKIPPRTVEGSERDRLKNL
                     EAELKSVIFGQDEAVAQVVSAIKLSRSGLGHPEKPIGSFLFSGPTGVGKTELAKQLAL
                     SLGVEFIRFDMSEYAEPHTVSRLIGAPPGYVGFDQGGLLTDAVNKSPYAVVVLDEIEK
                     AHPNLFNILLQVMDHASLTDNNGKRADFHNVILIMTTNAGAREMSGTRLGFQNQGAAV
                     SSGKGRGAIERAFSPEFRNRLDAWIAFEHLSRETIVRVVDKFAGEVRAQLAGKNVGLE
                     LTDAAREWLAEHGYDRQMGARPMGRLIQEKIRAPIAEEILFGRLRDGGEVVVDERGGE
                     LGLEFVGKD"
     gene            complement(9203..10141)
                     /locus_tag="VD968_11240"
     CDS             complement(9203..10141)
                     /locus_tag="VD968_11240"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HYE15006.1"
                     /translation="MKRLVLALLFAAALLGRAASAQTARQVAVTFDDLPSTHGDLART
                     RDLNLRLLASLKRNGVPAVGFVNESRLYRRGEMDARTALLAAWLDAGHELGNHTFSHI
                     LIDRHTLEEYKEDVMRGETVTRMLLGERGRRLRYFRHTQLRTGPTEEYRRGLSGFLRG
                     RGYTVAPVTIDNQEWVFADVYARAIARGDRATMKRVGDAYVPFMESVFDFFERLSVET
                     FGREVRQTLLLHANEINADYFDALATMMKRRGYSFITLEEALKDPAYSLPEAQSKTGL
                     SWIHRWRLAKGLELKMEPREPDWLAELHRAGARRSN"
     gene            complement(10171..11106)
                     /locus_tag="VD968_11245"
     CDS             complement(10171..11106)
                     /locus_tag="VD968_11245"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HYE15007.1"
                     /translation="MNRRAFLRGAGLGAAALCLGGRAAAALPSDRREVAITMDDFNVF
                     DTPYLSAPDRNRRILNALAGHRLKAAMFVAAKFVEAEPNMRLLREWGERGHVVANHTF
                     SHPWYPGKSFDEFSRDVLRAEEVLKAVPGYRKWFRFPFLKEGATPEQRDRMRAFLRER
                     GYRNGHVTIDASDWYVDQRLRERLKKEPKADTAPYRDFYLSHIAERARYYDGLARRAL
                     GRPVKHTLLIHHNVLNGLFLGDLLRMFEREGWKLIDADDAYKDPVFEREPKIAPAGES
                     LVWALAKESGKFEGELRYPGEDGEYEKARMDALGL"
     gene            complement(11182..13269)
                     /locus_tag="VD968_11250"
     CDS             complement(11182..13269)
                     /locus_tag="VD968_11250"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HYE15008.1"
                     /translation="MNWTDAFTTQAALAAVAWALLHFVWQGALVAALYAAFSQAAAGA
                     GANVRYAGACLALAVMLACPFVTAGLLLGRPAEATPARELVSAERRRAEAYRSARSLS
                     GGPVGAGASAAAGSVEQSSSSSPQELREWAEERFAALVPWLVFAWLAGVLALASRAVG
                     GLLVVLRLRRSARPVAEHVTELLARVSGRLRVSRTVRLCQSVLVEVPTVVGHLRPVIL
                     IPASALTGLTPAQLEAVLAHELAHVRRHDYVVNLLQTAAETLLFYHPAVWWVSRRARV
                     EREHACDDAAVQATGDVLLYARALAELEQLRAACATTPALALAADGGSLMHRIQRLVR
                     PRAAAKTRTPLTALALLLVTLCAGAVAARALVPADASEAPAAAPTSAPAQRREVAITF
                     VNYPGSIYSAQRLTNKTRKLLRSLKANNAKAVAFVNDARIGADDPALAEARVQMLREW
                     LDEGHELGNETAHHTSLYDAGLAEFKEEVIKGEQTIARLAAERGQRVRYFSYPYLNTG
                     ATLDVKRAAEEFLRGRGYEIHPVTIDNMDWLFSRAYIEALRREDEQAAARIRAEYVPY
                     MERMFEFSESYAREVVGRDIPQVLMLTFGALNADAFDDLAAMMKRRGYTFVTMEQATK
                     DEAYSLPDNYTGERGDSWLARWAVTKGLLYRDTEEVSLPGSMKQYLVEFQKMRAEKIR
                     AEKEKAKADAKKQ"
     gene            complement(13266..13655)
                     /locus_tag="VD968_11255"
     CDS             complement(13266..13655)
                     /locus_tag="VD968_11255"
                     /inference="COORDINATES: protein motif:HMM:NF015898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HYE15009.1"
                     /translation="MPEPTLPRPTDAELEILKVLWRRGPSTVREVFDVLSETKQTGYT
                     TVLKFMQIMAEKGLVRRDETARAHLYEAALAEEETQRQLIGDLLQRAFDGSAKKLVLQ
                     ALSSERASSAELDEIRRMLDELERGGR"
     gene            complement(13787..>14675)
                     /locus_tag="VD968_11260"
     CDS             complement(13787..>14675)
                     /locus_tag="VD968_11260"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15010.1"
                     /translation="ILRDWARSHPETAEAYRVRAAEFSEDAAKAKPILTEAMKKFPRD
                     ASFPFALAGFLAQEGKLKEAEALYVRAAELAPDAPQVQAWAGRFFFRVAPDDRRALEY
                     YLNAYLLDPHAYETEFVESRIPKIHERLAAAAFRDQLKRGVPLTKLATDADPFVAGLA
                     LDEMSKRWSPAYTETLVADMAHDDGGVRWQAMELLKGKAGASFDATLRALLEDKDLRR
                     RGLAAYLAVHRWKAASFDHLRRMLGDDTQLLRFDAVSALVMEGGPEGSRLVLEHAARE
                     PNARLKSLIEKTLARQPSR"
BASE COUNT         2310 a         5085 c         5031 g         2249 t
ORIGIN      
        1 gccttccgaa aagcgattct ctgttcgggc tcgtatgaag tattctctaa actaccgggc
       61 aggacgcttc tacactttaa cgcgcggcaa agtcaaaccg gccggcccgg gccgcgcgac
      121 ctaacgtgac gaaaggacgg gagatgagga agacgaggtt attcgtgctc gcggcgctcg
      181 cggccgcggc gctgctgccg gtctcgacgc gggcgcaggc tcaggcggcc gccgcgcggg
      241 acagcgtgcc gacgcgcgac atggagcgca tcaactggat ggagttcaag gaggtggtgc
      301 cgtcgaaagt ccagacggtg ctcttgccga cggggactct ggagccgcac ggcgtggcca
      361 acaacggcgc cgacaacacc gccccggcgg cgatagcgcg caggattgcg ccgcgcgtca
      421 acgccatgat cgcgcccacc ctcccctacg gcataacggg gagcatggag gcttaccccg
      481 gcgccttcca gataacggag tcggcctacc gccccttcgt caagcagatt ctcgaagggc
      541 tcgccaaaaa cggcttccgc aacatcatca tactgaacgg ccacggcggg ccgcagaccg
      601 ccgtgctcaa ctccgtcgcc gcggaggtcg ccgccgagcg gcgtgtgcgc acgctcgtca
      661 tcaactggtg gtctttcgcc tcggacatca cgaagcaggt gttcggcgag gacggcggcc
      721 acgccggctg gaacgagacg gccttcatac aggccataga ccctacgctc gtccaccccg
      781 agcgctacaa ggacgacctc gcgaccgcct accccgcgca aggcacatgg tcggccgcgc
      841 ccttcccctc ctccatcggc ctgtaccagc cgggtcaggg ctacccgaag ttcgaccaga
      901 agaaggccga cgagtatttc gtcaaggtca ccgacaagat cgcctcgctc gtctccgaag
      961 tcatacgcaa gtgggacgcg gccggcctct aagcgcgact ctcattcccc cgtgattaac
     1021 agcctgaacc tacgggccgt cgcgagaagg ccgccgaccg gcgagccttt cgcgccgctc
     1081 gcgcgcagcg ccttccgcgt gctcgggctc gcggcctcgg cgtcgcgcag ggaagtcaac
     1141 gcggccgccg actcgctccg gctctccctc aaggtcggcg cgacgaggag cttccccgca
     1201 gacctgccgg ccctaggccc gctctcgcgc gacgagtcgg cggtgcggga cgccgtcggc
     1261 cgcctcgcag acccgccgca gcgcctcttc gagcgcctct tctggttcca cgcccccccg
     1321 ccctcggcgc acgtcgcggc taacacattg acgattgcgc gcgccgccga agattcgctc
     1381 gcgcgcgggg gcgacgccgc ccgccacgac gccgcgctcc tgctcctcgt cggcctttgc
     1441 gtggccgacc ccgccttgcg cgagcgcgag gcttgggagc gcgccttcgc cctctgggcc
     1501 gacgtggtcg agggcgaaga gttctggtcg ctcctcgtcg ccgcagacct caagggcgac
     1561 tacgagcagc tcgcaacctt cgctgaagtc agagaactgc gcgcgcgcgc gccgcggctc
     1621 gtctccgaat tcctcgcggg ccgggcgaag ggttgggccg cacgcggcga cttcgaggct
     1681 tgcggccgcg cgctcgaggt gctgcgcgcg gcgcgtctgc cccgcccgct cctcgacgag
     1741 tacgagggcg acatactcgg ccccgtcgag gacgaggtcg agggcgttgt cagctcggcc
     1801 ttcggtgaga tggagttggg gaagctctcg gcctcggcgg gcagcgcaga ggcggcgaag
     1861 gactccttca accgctgctg gcgcaagttc gaggacgacg cgaagcccgc gctcttccgc
     1921 ttcgcgcgca cgggcggtgt cggcgccgcg agcgtgcgaa gggcgctcgc gcatgccgcc
     1981 gcgaagctgt gcgagctagc tgccgcttac cgcgaagcgc tccggcccga cgaggcgcgc
     2041 gaagtgctgc ggcaggcgct ggcgctcgcg ccgcccggct cggccgcgct cgtgcaggtc
     2101 gaggaagaca tgcgcgcctc ggggctcgcc gccgaggagg gcgcggagcg cgaggagact
     2161 tacgctgaag aagtctcgcg cgagcttcgc gcgcgtactt cgcccgagcc gaagccgtcg
     2221 gcggcgcctg cctcggccgc gggcgccggg ggcggcgaca cggtgctcgg ctgcgtcatg
     2281 cagatagcct tctacgcatt catggtcgcg ggctgcttcg cgctcgacaa gtgcggcgtc
     2341 atcaagactg gccgctcgac gcgctacggg ccgagctaca acctcaacta caacatcagg
     2401 cccttcccgc agttcacgcc cgtgccgttc ccgacgctcc accccttcgc cttcatgccg
     2461 cgcatgacgg ccgaggagct tcggcgcgag atgaggcgcg gcggcgtcac cgtcgttgac
     2521 gcgcgcgagc gcgccgccta cgacgccggc cacgtccccg gcgccgtctg ggcgccggag
     2581 gacagggcag gctcgctcgc gggccgactg cggcgcagca ggctcgtcgt cgtttatggc
     2641 gaggacgaga acgcggccga ccgggcggcg ctgaagcttt gggtcgcagg ccccgccgag
     2701 cggaagccct tcgtgctctc cggcggctac ctcgcgtgga gcgcgcccga ggtcgcgacg
     2761 ccgccgccgt ctcgggtcgc gccttcgcct tcacgttgac gctgtatttt tgtattttgg
     2821 gtgggcatgt ctgaagagat gccgcagacg ctcgaagtgc cgctcgccgc gctagcggag
     2881 ctggcggtcg agtgctggcg ccttgagcgc tgggccgaga cgacgaggga cgaggcttcg
     2941 gcggcccgag cgcgccacgc cgcgcgccgg ctcgctaagt tcctgggcga gcgcggcgtc
     3001 tccttcgttg accttacggg ccgcgcttac gagcccggcc tcgccgtcga ggtgctcgac
     3061 gttatccgcg accccggcgc cgcgggcgac acgattgacg agaccgtctc cccggtcgtc
     3121 ctctggcgcg gctccgtcat cagccacggg caggtggtaa tcagaaagaa gtaatcgccc
     3181 caaccatgac ctctatgttc atcaacttcg gaattgattt agggacgacc aactcttgcc
     3241 tggcgcaggc cgcggagggc ggcgaggtgc gcgtcataca gaacaacgac cagatgaacg
     3301 tgacgccttc ggtcgtgcgc gtcctaaagt cggggagcct gatggtgggg cgtcgcgcgt
     3361 acaacgcggc ggccgaagac ccggagaacg tagcgcagga gttcaagcgg ctgatggggc
     3421 agcgctactc gaagctgttc cccgcctcgg gccgctcgat gacgcccgaa gagctttccg
     3481 ccgaagtcct caaatcgctc ctggccgacg cgcggcggcg cacgggcgag ggcgtgcgcg
     3541 ccgcctgcat aacggtgccg gccgccttca ccgcgttgca gtgcgaggcg accgcacgcg
     3601 cagcgcgcct cgcgggccta gacgagcacc cgctccttca ggagcccatc gcggccgcca
     3661 tagcctacgg cgcgaagccc ggcgcgcgcg accagcgatg gatggtcttc gacctcggcg
     3721 gcggcacgct cgacgtggcc gtcgtctcga cgcgcgacgg gcggctgaac gtcctagagc
     3781 accgcggcga caaccacctc ggcggcaaag acgttgaccg cgcgctggtg cagggcgtgc
     3841 tgctcccctt cctcgccgag cgcttctctc tgcccggcgc agacgttgac gcgcgggcgc
     3901 acacccggct ggcgcggcgc ctgacgctcc tcgccgagta cgcgaagata gagttgacta
     3961 cggccgagga aacaatcgtc accctgctcg acttgggcga cgacgccgag ggacgcccca
     4021 tcgaggccga gatgacgctc acgcgcgcgc ggctcgagct tgagcttgag cctctacttt
     4081 cgcgctgcct gcggctcgcc gaagaggcgc tcgaaggcgc gcgcatgcgc ggcgcggact
     4141 tagaccgcgt gctcctggtc ggaggcccta cgcagatgcc gcgcgtgcgc gccgcgctct
     4201 ccgagcgcct gggcgcgcct gttgactcgt cgctcgaccc catgaccgtc gtcgcgcgcg
     4261 gcgccgccat ctacgcctcg accgtcgaac gggcgagccc ttcgtcaaca tcgaagccgg
     4321 aagtgagcgc ggccggcaag ctctccgcgc gcctcgcctt cgaccccgtg agcgcggagg
     4381 cgcaggcgcg cgtcgccggc aagctctccg gcggcgcgcg gggcgaggcg ctggaagtga
     4441 agatagattc cgaaggcggc ctctggacga gcggctggca cacgaccgaa ggcggcttct
     4501 tcgagctacc gctcgtcatg caggaggggc agctcaaccg cttccgcctg agcgtgcgcg
     4561 actcgcgcgg gcgcgcgctc ggggtcgagc cctcggagtt ccagattcgc cacggcctta
     4621 cgataagcgc gccgccgctg ccccacacaa tctcggtcga ggtcgcgcgc cccgacggca
     4681 cgcacgagtt gagccccgtc ttcccgcgca agacgctcct gccggccgag cgctccgtct
     4741 cctaccgcgc cgcgcacacg ctcaggccca gcgagcccga cacctcgctc gccataaagc
     4801 tctgggaggg cgaggcgctc acagacccgc aggccaacac gtgggtcggc aacatgcacg
     4861 tcgcgagcga cctggtgcgc cgccccgtcc ccgaaggcgc cgaggtgcag ttgcacataa
     4921 agattgacgc gtcgcgcctc atcacggtcg aggcgttcat cccgcacctc aacgagcact
     4981 tcaaggacta catatacatc ccgcaggacg aggagcccga ctacgccgag cttctccgag
     5041 gcgtccccgc cgaggtcgag tcgtgcctcg cgcgtctcgc gcgcgtcgag gagtttttga
     5101 tggggcgcgg gctctcggac gaggacttcg acttccccga ggtcgtctat gacgacggct
     5161 tcgcgccggg cggcgacggc gactccgccg gcttcggcgc cgagccttct gccggctcgg
     5221 ggccgcgcgc cgaggccgac cggctgaggc gcgagataga ggacttcgac ctggagttgg
     5281 gcggcgaggc ggccgtcgcg gacgagcccg accgcgcgcg cggcgtcgtc gagcgcatga
     5341 gggagttccg ccgccgcgtg gccgagctcg aaaggcgcgc cggcctcgtc gcctccgact
     5401 cgggcgccgg cttgaccgag atgctcgcgc tcgacgtcga gcgcaccgtc gaggcttacg
     5461 gcaccgacgc gcagaaggag aagttcgccg cgctgcgccg cgagctgaac gacgccgtct
     5521 cgcgcggcga cgcgcgcggc acgcgcaagg cttcggccgc gctgcgttcc ctgcgcgggc
     5581 aagtcctcta cgcgcaggac tggttctggc aggactggtt cgaccacatg agccgccccg
     5641 gtcaggagtt cgtcaacgcc tcggaggccg cgcgctggct agaggagggc cggcaggcgc
     5701 gcgcgagcgg cgaccgccgg aagctcgagc gcgccgtccg ctggctctgg tcgctcaggc
     5761 ccctggaaga gcaggaggcc aggcgcgagc gctcggcccg gcccggcctt aagcagtgag
     5821 cgattctttc agaagagctt gaggccgcgg cggagagcgc gggcgaggcg ttctaaaaat
     5881 tcttcgcgag ggatgagttt ggcgccgagc gcctccatgt ggggcgtcat cacctgcacg
     5941 tcgagccagt cgagcccctt cgactgtaaa tgctcaatca ggtgcagcag cgccagcttc
     6001 gacgcattcg gccgcaggtg gaacatgctc tcgccggcga acgcgccgcc cgcatccacg
     6061 ccgtagatgc cgcccgccag ctctccgccc tcccaagcct cgacgctgtg cgcgcgcccg
     6121 agcgcgtgca gctcgcagta gccccgtatc atctcgggcg ttatccacgt ccccgactcg
     6181 tgcgcgcgcg ccacgctcgc gcagttgcga atcacgcgcc cgaaggcggc gtccacggtg
     6241 aaacgcaggc gcgtgcgccg cctttcgcgc gcgaggctgc gggggacgtg aagctccgcg
     6301 aagtcgagca cggcgcgctc aggcggggag aaccagagca gcgggtagcc ctcgaccggc
     6361 cacgggaaga tgccgttggc gtaagcctcg accagaaagt ccgggccggg ctcgccgccc
     6421 acggcgacga cgccttcggg cgtcgcgtct cgcgggtcgg ggaagcgcac gatgaggggc
     6481 atgcccgcga tgatagaaca aaccggcggc ccgctcacgc ccgcggcggc cggcccccgc
     6541 gcccgctttg ccttttgcgc cgctgctttt aagattgccg tatgccggag cgcgagcaca
     6601 gcttcgagga ggaggtcgcc acagagacgc gggagaagct caagaagccc ccgctctacc
     6661 gcgtcgtcct gcacaacgac gacttcacca cgatggagtt cgtcgtcgaa gtcctgaccc
     6721 gcgtcttcaa caagtcggag gcggacgcct tccgcatcat gtgggccgtc cacacgcagg
     6781 gcgcgggggt ggcgggcgtc tatacttacg aggtggccga gatgaaggtc gagcgcgtga
     6841 cgcagatggc ccgcgcgcag gagttcccgc tactctgcac cgtggaggaa gaaccccagg
     6901 gcgactgacg gcatcaaaac ccctcggcac ggggccgctt caccgaatga tcactaaaga
     6961 gctacagggg actctgaact tcgcggcgac ggaggcgata aagcggcggc acgagtacgt
     7021 gacgctcgag cacctgctct acgcgctgct gcacgacgcc acggccggca aagtgcttcg
     7081 tgcctgcggg gctagggtcg aggcgctggc ctccgagctt gagaccttct tcgacgagaa
     7141 gatggagcgc gtgccgcagg cgagcgagct gctgcccgag tacaccgccg ccttccagcg
     7201 cgtcgtcgag tacgcgctcc tacaggccga ggggtcgggc cagagggagg ttgacggcgg
     7261 caacgtcctc gccgcgctct accagcagcc gaactcccac gccgtctatc tgctcaagaa
     7321 gcagggcgtg acgcgcctcg acatcctcaa ctacctcgcg cacggcatca cgaagtcggg
     7381 cgccgcgccg ggcggcttcg ccacggaagg cgccgaggac gaagagcagc ccgtccgaga
     7441 cccgctggcc gccttcacca cgaacctcgt cgagagcgcc gccgaaggca ggatagaccc
     7501 gctcatcggc cgcgagcccg aggtggcgcg caccatccag gtgctctgcc gccgccgcaa
     7561 gaacaacccc atctacgtcg gcgaccccgg cgttggcaag accgcgattg ccgagggcct
     7621 cgcgctcaag attcaccgcg gcgaagtccc cgaggttctg aagggagccg aggtctattc
     7681 gctcgacatg ggcgccctgc tcgcggggac gaagtaccgc ggcgagttcg agcagcgcct
     7741 gaaggccgtc atcgcggccc tgaagaagaa gccgaacgtc gtcctcttca ttgacgagat
     7801 acacaccatc gtcggcgccg gcgccgtctc gggcggctcg atggacgcct cgaacatcat
     7861 caagcccgtg ctcgcctcgg gcgagattcg atgcataggc tcgacgacct accccgagta
     7921 caaggcggcc ttcgagcgcg accgggcgct cgcacgccgc ttccagaaga tagaggtggg
     7981 cgagccctcg ctggaagaga ccgtcgagat tttgcgcggc ctcaagagct actacgagca
     8041 gcaccacggc gtgagctact cggacgaggc gctcggcgcc gccgcagagc tttcggccaa
     8101 gcacatacac gagcgcttcc tccccgacaa ggcgattgac gtgattgacg aggccggcgc
     8161 gatggtcagg ctcatgccgg cagaagagcg ccccgcggag gtcggcacgc acgagatcga
     8221 gggcgtcgtc gcgcgcatgg cgaagatacc gccgcgcacg gtcgagggct ccgagcgcga
     8281 ccgcctgaag aacctggagg cggaactcaa gtccgtcatc ttcggtcagg acgaggccgt
     8341 cgcgcaggtc gtgagcgcga taaagctctc gcgctccggc ctgggccacc cggagaagcc
     8401 catcggctct ttcctcttct ccggcccgac gggcgtgggc aagacggagc ttgctaagca
     8461 gctagccctc tcgctcggcg tcgagttcat acgcttcgac atgtcggagt acgccgagcc
     8521 gcacacggtc tcgcgcctga taggcgcgcc gcccggctac gtcggcttcg accagggggg
     8581 cctgctcacc gacgccgtca acaagagccc ctacgccgtg gtcgtcctgg acgagataga
     8641 gaaggcgcac ccgaacctct tcaacatact gcttcaggtg atggatcacg cctcgctcac
     8701 ggacaacaac ggcaagcgcg ccgacttcca caacgtcata ctgataatga cgacgaacgc
     8761 gggcgcgcgc gagatgtccg gcacgcgcct cggcttccag aatcagggcg cggccgtttc
     8821 gtcgggcaag gggcgcggcg cgattgagcg cgccttcagc cccgagttcc gcaaccgcct
     8881 cgacgcctgg atagccttcg agcacctgag ccgcgagacc atcgtgcgcg tcgttgacaa
     8941 gttcgccggg gaggtgaggg cgcaactggc gggcaagaac gtggggctcg agttgaccga
     9001 cgcggcgcgc gaatggctcg ccgagcacgg ctacgaccgg cagatgggcg cccgccccat
     9061 gggccgcctc atacaggaga aaatccgcgc gcccatcgcc gaggaaatcc tcttcggccg
     9121 gctgcgagac ggcggcgagg tcgtcgtgga cgagcggggc ggcgagttgg gcctcgagtt
     9181 cgtcggcaaa gactagccca cgtcagttgc tgcgacgggc gccggccctg tgaagctcgg
     9241 cgagccagtc gggctcgcgc ggctccatct tgagttccag ccccttagcc agccgccagc
     9301 ggtgaatcca cgaaaggccc gtcttcgact gcgcctcggg cagagagtag gcggggtctt
     9361 tcagcgcctc ttcgagcgtg atgaaggagt agccgcgccg cttcatcatg gtggcgagcg
     9421 cgtcgaagta gtcggcgttg atctcgttgg cgtggagcag cagcgtctgc ctgacctcgc
     9481 gtccgaaggt ctcgaccgac aggcgctcga agaagtcgaa gacgctctcc atgaagggga
     9541 cgtatgcgtc gcccacgcgc ttcatcgtcg cgcggtcgcc gcgcgcgatg gccctcgcgt
     9601 aaacgtccgc gaacacccac tcctggttgt cgatcgtgac cggcgcgacc gtgtagccgc
     9661 gcccgcgaag gaaccccgag aggccgcggc ggtactcctc ggtcggcccc gtgcgcaact
     9721 gcgtgtggcg gaagtagcgc agccttcggc cgcgctctcc gagcagcatg cgcgtcactg
     9781 tctcgccgcg catcacgtcc tccttgtact cttcgagcgt gtggcggtct atgagtatgt
     9841 gggagaaggt gtggttgccc agctcgtggc cggcgtcgag ccaggccgcg agtagggcgg
     9901 tgcgcgcgtc catctcgccg cgccggtaga gcctcgactc gttgacgaag ccgacggccg
     9961 ggacgccgtt gcgcttgagg ctcgcgagca gccgcaggtt caagtcgcgc gtgcgcgcga
    10021 ggtcgccgtg cgtcgagggc aggtcgtcga acgtgacggc gacctgcctc gccgtctgcg
    10081 ccgaggccgc gcggccgagc agcgccgcgg cgaacaggag ggcgagcacg agtctcttca
    10141 taaaggctta tcccctcggg cgcgaccgcg tcagaggcca agcgcgtcca tgcgggcctt
    10201 ctcgtactcg ccgtcctcgc cggggtagcg cagctcgccc tcgaacttcc ccgactcttt
    10261 cgcgagcgcc cagacgaggc tttcgcccgc gggcgcgatc ttcggctcgc gctcgaagac
    10321 ggggtctttg taggcgtcgt cggcgtcaat tagcttccag ccttcgcgct cgaacatgcg
    10381 caggaggtcg ccgaggaaga ggccgtttaa gacgttgtgg tgaatcagga gcgtgtgctt
    10441 tacgggccgg ccgagcgccc tgcgcgcgag cccgtcgtag tagcgcgccc gctctgcgat
    10501 gtgcgagagg taaaagtccc tgtagggcgc cgtgtcggcc ttcggctctt tcttcaggcg
    10561 ctcgcgcagg cgctggtcaa cgtaccagtc cgacgcgtca atggtgacgt ggccgttgcg
    10621 gtagccgcgc tcacgcagga aggcgcgcat acggtcgcgc tgctcgggcg tcgcgccctc
    10681 cttgaggaac gggaagcgga accacttgcg gtagcccggc accgccttca agacttcttc
    10741 ggcccgcagc acgtcgcgcg agaactcgtc gaagctcttg cccggatacc acgggtgaga
    10801 gaaggtgtgg ttggcgacga cgtggccgcg ctcgccccac tcgcgcagca gcctcatgtt
    10861 cggctccgcc tcgacgaact ttgcggcgac gaacatcgcg gccttaagcc ggtggcccgc
    10921 gagcgcgttg agtatccggc ggttgcggtc gggggccgag aggtagggcg tgtcgaagac
    10981 gttgaagtcg tccatcgtga tggcgacttc cctgcgatcc gacggcagcg ccgccgcggc
    11041 ccgcccgccc aaacagagcg ccgcagcgcc caggcccgcc cctcgcaaaa acgcccttcg
    11101 gttcatcggc cctccctcgc ttttactttc gcgcctcccg cgtgaaatcg aatctcacgc
    11161 gggaggcgcg aagcttcggc gctactgctt cttggcgtcg gctttggcct tctccttctc
    11221 ggcccttatc ttctcggcgc gcatcttctg gaactcgacg aggtactgct tcatcgagcc
    11281 gggcaggctc acctcctcag tgtccctgta caacagcccc ttggtcacgg cccagcgcgc
    11341 cagccacgag tcgccgcgct cgcccgtgta gttgtcgggc aggctgtagg cctcgtcctt
    11401 cgtggcctgc tccatcgtga cgaaggtgta gccgcgccgc ttcatcatgg cggcgaggtc
    11461 gtcgaaggcg tctgcgttca gggcgccgaa ggtgagcatc aagacctgcg ggatgtcgcg
    11521 gcccacaacc tcgcgcgcgt aagattcgga gaactcgaac atgcgctcca tgtaggggac
    11581 gtactctgcg cgtatgcgcg cggccgcctg ctcgtcctcc cgccgcaggg cttcgatgta
    11641 ggcgcgcgag aagagccagt ccatgttgtc aatcgtcacg gggtgaatct cgtagccgcg
    11701 ccctcgcagg aactcctcgg ccgcgcgctt cacgtcgagc gtcgcgccgg tgttcaggta
    11761 cgggtagctg aagtagcgca cgcgctggcc gcgctcggcg gcgagccgcg cgatggtctg
    11821 ctcgccctta atcacttcct ccttgaactc ggcgagcccg gcgtcgtaga ggctcgtgtg
    11881 gtgcgcggtc tcgttgccta gctcgtggcc ctcgtcgagc cactcgcgca gcatctgcac
    11941 gcgcgcctcg gccagcgccg ggtcgtcggc cccgatgcgc gcgtcgttga cgaaggccac
    12001 ggccttcgcg ttgttcgcct tcaggctgcg cagaagcttg cgcgtcttgt tcgtgagccg
    12061 ctgtgcgctg tagatgctgc cggggtagtt gacgaaagtt atagccacct cgcggcgctg
    12121 cgcgggcgcg gaagtcggcg cggcggcagg cgcctcggag gcgtccgcag ggacgagggc
    12181 gcgggcggcg accgcgccgg cgcacagggt tacgagcagg agcgcgagcg ccgtcagggg
    12241 cgtgcgcgtc ttcgcggccg ctctcggccg cacaagtctt tgtatgcgat gcatgagtga
    12301 acctccgtcg gctgccaggg ccagcgcggg cgtcgtggcg cacgccgcgc gcagttgttc
    12361 caactcggcg agcgcccgcg cgtacaggag cacgtcgccc gtcgcctgaa cggccgcgtc
    12421 gtcgcacgcg tgctcgcgct cgacgcgcgc gcgacgcgag acccaccaga cggccgggtg
    12481 gtagaagagc agagtctccg cggcggtctg tagcaggttg acgacgtagt cgtggcggcg
    12541 gacgtgcgcc agttcgtgag cgagcacggc ctccaactgc gcgggcgtca ggcccgtgag
    12601 cgcgctggcc gggatgagta tcacaggccg caggtggccg accacggtcg gcacctcgac
    12661 caagacggac tggcagagtc gcaccgtgcg cgacacgcgc agcctccccg agacgcgcgc
    12721 gagaagttcc gtgacgtgct cggccaccgg ccgcgcgctc cgcctgagac ggagcacgac
    12781 gaggaggccg cccaccgcgc gcgacgcgag cgcaagcacg cccgcgagcc acgcgaagac
    12841 gagccacggg acgagggccg cgaagcgctc ctcggcccac tcccgcagct cctgcgggga
    12901 cgaagaagac gactgctcga cagagcctgc ggccgccgaa gcgcccgcgc cgaccggccc
    12961 gcccgagaga gagcgcgcgg aacggtaggc ttccgcgcgg cgccgctcgg ccgagacgag
    13021 ctcgcgcgcg ggcgtcgctt ccgccgggcg ccccagaagg agcccagcgg tcacgaacgg
    13081 gcacgccagc atcacggcga gcgccaggca cgcgcccgcg tagcggacgt tcgcgccggc
    13141 gcctgccgcg gcctgtgaga aggcggcgta gagcgcggcc accagggcgc cctgccatac
    13201 gaagtgcagt agcgcccacg ctacggcggc gagcgccgcc tgcgttgtaa aggcgtctgt
    13261 ccagttcacc gcccacccct ttccagctca tcgagcatcc gtcttatctc atccagctct
    13321 gcggaggagg cccgctcgga agagagggcc tgaaggacga gcttcttggc cgacccgtcg
    13381 aaggccctct gcaagaggtc tccgatgagc tgccgctgag tctcctcctc ggcgagcgcc
    13441 gcctcgtaga ggtgcgcccg cgccgtctcg tctctcctca cgagcccctt ctccgccatg
    13501 atctgcatga acttgaggac ggtcgtgtaa cccgtctgtt tcgtctcgct tagcacgtcg
    13561 aagacttccc gcacggtgct cggcccgcga cgccagagca ccttcaggat ttccaactcc
    13621 gcgtccgtcg gccgcgggag cgtaggttca ggcattgcaa tacctcgttt cggcttcgag
    13681 ccggggggca gactactacg aaggagttcg tagtgtcaac gaaaattttc gtagttctta
    13741 acagcgccac ttttatcaag aaaaagcggg cttttcgggc tgggctttac cgggacggct
    13801 ggcgagccaa cgtcttctcg ataaggcttt tgagccgcgc gttgggctcg cgggcggcgt
    13861 gctctaagac gaggcggctg ccttccggcc cgccttccat gacgagggcg gagacggcgt
    13921 cgaagcgcag gagctgagtg tcgtcgccca gcatgcgccg caggtggtcg aagctcgcgg
    13981 ccttccagcg gtggacggct aggtaggccg cgagaccccg ccggcgcagg tctttgtctt
    14041 ctaggagcgc gcgcagggtc gcgtcgaagg aggcgcccgc cttccccttg agaagctcca
    14101 tcgcctgcca gcgcacgccc ccgtcgtcgt gcgccatgtc ggcgacgaga gtctccgtgt
    14161 aggccgggct ccaccgcttc gacatctcat cgagcgcgag cccggcgacg aaggggtctg
    14221 cgtcggtcgc cagcttagtg agcggcacgc cgcgcttgag ctggtcgcgg aaggcggctg
    14281 cggccagccg ctcgtggatt ttggggatgc gggattcgac gaactcggtc tcgtatgcgt
    14341 gcgggtcgag caggtatgcg ttcaggtagt attcgagcgc gcggcggtcg tcgggcgcaa
    14401 ccctgaagaa gaacctgccg gcccacgcct gcacctgcgg cgcatcgggc gcgagctccg
    14461 ccgcgcggac gtagagcgcc tcggcctcct tcagctttcc ctcctgagcg aggaagcccg
    14521 ccagggcgaa cgggaagcta gcgtcgcgcg ggaatttctt catcgcctcc gtgagtatag
    14581 gcttggcctt cgccgcgtcc tcggagaact cggcggcgcg gacgcggtag gcctcggccg
    14641 tctcggggtg cgagcgcgcc cagtcgcgga ggatt
//
LOCUS       DASPKR010000417        23147 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1225637, whole genome shotgun sequence.
ACCESSION   DASPKR010000417 DASPKR010000000
VERSION     DASPKR010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 23147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23147)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23147
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1225637"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1043)
                     /locus_tag="VD968_11265"
     CDS             complement(<1..1043)
                     /locus_tag="VD968_11265"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HYE15011.1"
                     /translation="MALKGFATTEGTERYRGRFPEAAGAGHFRFEQGLWLSSVGIGTY
                     LGNWDEQTDRGYREAITRAVELGANVIDTAANYRFQRSERSVGAALEELTSRGGFARE
                     EIVVCTKGGYLPFDGAPPAGQSGVRAYIEETFVRAGVASFEDIVAGSHCMTPRYLEHQ
                     VAQSLRNMRLETIDVYYVHNPETQLQALGREEFDRRLRSAFEQLERERAAGRVKHYGV
                     ATWNGFRAQAGSRGHHPLERMVELAREAAGGADSHGFRFVQLPFNLGMPEALVADNQP
                     FRGASVSVLEAAKALGVTVVASASILQGKVAQDLPEHIRRPLGSLPTDAQTAIQFVRS
                     TPGVTTALVGMSSR"
     gene            1152..2696
                     /locus_tag="VD968_11270"
     CDS             1152..2696
                     /locus_tag="VD968_11270"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HYE15012.1"
                     /translation="MTREHAQDRERAVSLDLPEGELRELSETFRRAALELMSEPEALP
                     VFPETSAEATARLFRLPLPAEGVGLSALSEDFRRVVSNVRQNNHPRMFGYVASPAAPA
                     AVFGDWVASALNSNVTSWRSAPAAAEVERTVVGWLAEMIGYGGGGGRDCGGLLTSGGS
                     MANMIALFVAHRWQLRAAGVGSAGAHDVSREGLWGAGAPMTIYASDQVHLSIPKAADV
                     LGFGRAHVRVVPSGDDFRMDVRALAERVEADKAAGLRPFCVVASAGTVATGAVDPLAE
                     VARVARERSLWFHVDGAYGALARSDASKSALFEGLEEADSVSLDPHKWLYAPLDCGCL
                     LMRDPARARAAFEGTEEGYIRVFEREADEAFAFWDYGVELSRPFRALKVWALLRYYGA
                     RRVAACIAEDNRLAAHMGELVREAEDFELMAPVTLGICCFRYVPAEWGREPGENSDAR
                     LDELNARVMHRVQRGGEAYVSNAVLRGRFALRASVTNFRTTRRDLRLTLDVIRRAARE
                     CLNEGA"
     gene            2708..3592
                     /locus_tag="VD968_11275"
     CDS             2708..3592
                     /locus_tag="VD968_11275"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HYE15013.1"
                     /translation="MSAIQRVTKGEYERELQTAIELARRSGAAALSFYGGPIRVEHKD
                     ELNEPVTQADRAVNELIVRGLHDAFPEDGILAEESVDTERRLSRERAWMVDPLDGTKG
                     FIAGTGDFAVQIGLAVGGESVLGVVYAPATDVLYWAARGHGAWVERPTSEAGESVMCE
                     RLGVTDEKDLTRMRLVESRSHRSPRMDRVVEELGVRAEVKRHSVGIKVGLLVERQADL
                     YIHLSGKTKQWDTCAPEAIMREAGGKFTDLWGEPMRYNTPDVYNHNGLVASNGAAHDE
                     VVTHLRRLLAEFGRERVE"
     gene            3640..4065
                     /locus_tag="VD968_11280"
     CDS             3640..4065
                     /locus_tag="VD968_11280"
                     /EC_number="1.11.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA];
                     GO_process: GO:0006972 - hyperosmotic response [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0033194 - response to hydroperoxide
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HYE15014.1"
                     /translation="MIRKGSAVWQGGIRDGRGTVSTESGVLSDAQYSFSTRFEDSAGT
                     NPEELIGAAHAGCFSMALSKQLEDAGMKAESIRTTATVRLEKTDAGFAITKIHLDVTA
                     RVPGGDDAKFQTAAGKAKAGCPVSRLFNAEITMSAKLEA"
     gene            4090..5271
                     /locus_tag="VD968_11285"
     CDS             4090..5271
                     /locus_tag="VD968_11285"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYE15015.1"
                     /translation="MAGDELEAAGAQTKAVHAARGENRTRAVAPPIWQTSAFSADSSE
                     EFAEVAKSVRPAEFYTRYGNPTHKQVEATVAALEGGEAVLLTSSGMGAVFAAVMSSVS
                     AGDHVVSQRSLYAGTETLMKELQRFGVSVTYVDQTRAEDFAAALRPETKLVYAETPTN
                     PLMALTDLRAVAHAARERGITTIVDNTFATPVNQRPLDLGIDVSVHSATKYLGGHHDL
                     SAGCVVSSREFVERAWRFSLVAGATLSPFDGWLLLRGLRTLGLRVERHNSNALALARF
                     LEHHPKVERVYYPGLESHPQHELARSQMSGFTGMLSFELAGGFGGAERFISSLRLATY
                     APSLGGYETLVVHPAAMWGLQLSPEQKTEMGVGAGLVRVSVGLEDERDLLEDFSRALD
                     A"
     gene            5283..6011
                     /locus_tag="VD968_11290"
     CDS             5283..6011
                     /locus_tag="VD968_11290"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYE15016.1"
                     /translation="MSFTTTVMLAAAVLFAATFVRSAVGFGDALVAMPPLALLLGVKT
                     ATPLVAFAASTIAVVILSRQWRSVDVRSTWRLVVSSLAGIPFGLLLLKLAPEAHVKLL
                     LGALLAAYGLYGLVSPRLPELRGERWAYAFGFAAGVLGGAYNTNGPPVVIYGALRRWP
                     PEHFRATLQGCFLVTGLMIVVGHGAAGLWTPLVVWLYLASLPGILLAVWLGALTNRRI
                     PRAAFGRVVYAFVAVMGALFLIQF"
     gene            6025..6939
                     /locus_tag="VD968_11295"
     CDS             6025..6939
                     /locus_tag="VD968_11295"
                     /inference="COORDINATES: protein motif:HMM:TIGR00654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HYE15017.1"
                     /translation="MRKLHYHRVDVFTDRAFGGNPLAVFTNGRGVSAETMQAIAKEFN
                     LSETTFVLPPDDPAHDWRVRIFTPGSELPMAGHPTVGTSFILAREHLVETKQDGEVLI
                     TLEEGVGPVPVRLEFEAGLPAYAEMSQPLPTFGPRFKDPKAIADMLSLEVADVTNTGL
                     PYEVVSCGVPFLFVCVQGLEQMRRIRFRTDVFERVAAEVGVPGLFVFAREVESFEAQI
                     HSRMFAPGAGILEDPATGGASGPLGCFLFRHGAVSRRAPVNFVSEQGIEMGRPSYIRI
                     KIEHEGDEITGVKVGGKCHYMGEGFIEV"
     gene            7248..8060
                     /locus_tag="VD968_11300"
     CDS             7248..8060
                     /locus_tag="VD968_11300"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYE15018.1"
                     /translation="MTHTAQIIPEKVTPPFEPPPVTRERLLRTLGESLDTCNSTIIHG
                     RAGTGKTMLAADFARQCSRAVAWYKLDAPDCELSVFFQYLCASIAEQRPGFGQRVLER
                     VGEQPVAAGDVPLLVECFVYELLESNEPLLVVIDDLHLVYDAEWMVPFFRRLLPLLPR
                     EVHFCLIGRSLPPTPLWRMRSKQTLCVVDESALAFTLAEARTLFTRYGLPAERADAAL
                     LQTRGRAATLDAHAAAAADAAGRPLTPRSRAGHTERPLRLVKGFRKSSMGTA"
     gene            8293..11646
                     /locus_tag="VD968_11305"
     CDS             8293..11646
                     /locus_tag="VD968_11305"
                     /inference="COORDINATES: protein motif:HMM:NF037660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BTAD domain-containing putative transcriptional
                     regulator"
                     /protein_id="HYE15019.1"
                     /translation="MTNMPQRQEGTQPDGPTTPVVFKGDAGASPLPTFFLRTKLLPPR
                     PAPSLLQRPRLTERMEQNLAHAVTLVTAPAGSGKTTLVADFVRNRPFVWYQLDHTDSD
                     PLVFLGYVAHGIQQIVPGFGGATMSYLQESAKELAQQPQRAVDVLLNEVLDRVEQQFI
                     LVLDDYHHLGTDTPVHRVVDRLLAYLPDLMHVVIISRDMPPLALARMRTQASLAVIDR
                     QELLFTDEETRELFREVFDLELTPEQLAEYRERTHGWITALQLVRQVAQRQALASGGA
                     AAAPDLVEVLRQSERDIFDYFAEEVFADEPEEVRAFLLRLSLLERIEPDTCGRLYPEA
                     HSAGLLQSLARRNVFLSLASDGRGEEYRLHPLFRSFLQRRFRAEAGRSAVAAEHSRIA
                     DFFLESEKWEQAMQHLLAAEDFDRAAETIAARGGEWVSAGALASLAAFADVLPKAALE
                     AHPRALAHRAEVARLRDEESAQPLFNRAAALLHEQGDREGEAEALHSLATIARRRGEC
                     ETAFAYLDRATELTDERSVVRTKCGNTRGLCLVALGQWTEAEREFRAALQSAEEQGDH
                     YYARLISHNLGLPTGIRGDFGQGLRWLRRMLREEGDASTPMPQEAVAHLNIARLYWHM
                     GDFDPCERHLDRALETCQLFNLTGLRGEIFEYYGNLHRERGDLARAVEFYDRAERAYD
                     EAGIEITRTELLEERGLLALEMGDLTGARALLDRLIEARARDEMLRQRTILARARVLI
                     AQGKTDEARADLQFALGYFRSMGLYYNEAQAALLLAVCEHAAGQDVAVLGHLRRALDL
                     AARYDYEYWLQRSVARYPQVFSAPEALELLPADLREHLQAAPPPPAAPAAGAVARPAL
                     VAQAPPADLTVNMLGPVEIYRDPARAFAADAWVTRRARDILCFIASRRHRRASKDTII
                     DTFWGESDFGSVEKNFHPTISHIRKALNSNQPLKQNFLLYRDGDYQLNPEFSYRIDSE
                     EFDRLVAEGDAARRAREQEAYVKAYEEAVSLYRGEFMSGSYDEWAEEQRTYYHEQYLR
                     ILEILADAAQKAEDWARSLQLAQRILREDPFREDVHCRLMRAHAAQGNRVAVKDQYET
                     LRKLLKKELGVEPAAETQRTLRQLMGPGG"
     gene            11819..14800
                     /locus_tag="VD968_11310"
     CDS             11819..14800
                     /locus_tag="VD968_11310"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYE15020.1"
                     /translation="MSTSKHAAARLRRATALALAVLLTALPVSAGVSFQVTQGLTLTG
                     ADGIFFENPNGLTLTGADGYLAFDANGITRVGSDGLTLTGADWKFTARADGVSYTGSN
                     SYVATRADGLTLTGADGLTLTGADGLTLTGADGTMHQVNSVVFREPAGLTLTGADGLT
                     LTGADGVEPNGSDGLTLTGADGLTLTGADSVTVNTAGQAVVTTTDGQVLSVSPNGLTL
                     TGADMLRVVGAENVAIYGVQGFSLAGADGLPLAGPENAPNSGLMSLDPELALMLDRMS
                     DDSNVNAVIVYHRPVTETDILTLQAIGVLGGTRYQSLPMVAVTTTKRKLDIIADLAAV
                     RTIYGARTLEWSAADNSREQTGLLRARSDSELLSLGGGLAPEGDGVTVAVLDTGVDAT
                     HEDIAGRVVSNVKLADFQGSQIGFSPPLNVEGFSTTDQASGHGTFVGGIIAGAGTKSG
                     GKFRGYAPKARLVGLSAGDASLFNVLAGFDYLLSNPSLGVRVVNCSFSANTVYDENDP
                     VNVATRMLVERGVNVVFSAGNTGPGLRTLNPYAAAPWVISVGATDGATGRLANFSSRG
                     EFASRTARPTLVAPGVSVVSLRASGTNVTGTTGLPADLTQLTPSELQHYTSASGTSFS
                     APAVAGTIALMLGVNPSLTPAGVRDILQRTATPTPAYYRHEAGAGALNSHAAVLDAAF
                     PDRHIGYFRATLDRGQVRFIREASQIFEKTLAPGTSAQSSFAVPKNAVYVSSQVAWGP
                     VVSPNDLGMSLADASGAVRAESNYLNLPGLTGKRERVFVPAPEAGEWRVRVYHTLGAG
                     FTSQGFRGVFETARVDYAPTTDTAKLDPATQANIRTAVRTFTMWPDGARFRPGGNVKR
                     YELAEALVSAGRAPQYMPGVPTFRDVTDRATMNFVESAHRLFPDARPGSNFRPDVPTS
                     RLVAAVALVRAAGLQSEAEANMTTPLDVPDVAGIPTQYRGYVFVALSRGLMSPLSGKF
                     RHNRDLTRAELAQGLAALLKL"
     gene            complement(15353..16075)
                     /locus_tag="VD968_11315"
     CDS             complement(15353..16075)
                     /locus_tag="VD968_11315"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYE15021.1"
                     /translation="MRLAERLAAVALVCCCSACVARAQQQPGAPRAADEAPKKANSRP
                     DARQQQAPAEPFDKATVAQMSGQCVRLETAAGLIEIEMLAEAAPESVRNFLNLVATGA
                     LDTTTFSRVVRGFVVQGGNLSTREKVTVEIAKRARRTVPDEPNAVKHVRGVVSMARSD
                     EPNSATTHFFILVGEGSHLDGKFAAFGRVTRGMEAVDQMNAAELDGETPKNPVRINRA
                     TVAPCPAPAPQPSPAPQATPRP"
     gene            complement(16072..17805)
                     /locus_tag="VD968_11320"
     CDS             complement(16072..17805)
                     /locus_tag="VD968_11320"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HYE15022.1"
                     /translation="MKTRSTVLALAAALACAAWAHDSSAQRKDAAAQKMPAALKPALD
                     SISSDDILRHTKALSSDEFEGRGPGTRGEELTVAYLTEQMKRIGLKPGNPDGTYVQKV
                     PLVGMKADPSMSVEAGGKRIDMKFPDDFVAVSRRNVAETKVSDSDLVFVGYGVVAPEY
                     GWDDYKGVDVRGKTIVMLINDPAVPDPSDPSKPDERMFKGKAMTYYGRWTYKYEIASE
                     KGAAAAIIVHETGPAGYPFEVVKGSWGQENFDIIRADKNMGRVGIESWVTLDRAREIF
                     SAGGHDFDALKRAAVRKDFKPVALNAKLNASVKNTLREVQSNNVVGKLEGSDPKLRDE
                     YVVYSAHWDHLGKNEKLQGDQIYNGAIDNASGVAQVLEIAEGFAKLPRKPKRSILFLF
                     VTAEEKGLLGAKHYAENPLYPLHKTLANINIDGANQWGRTSDVVIIGDGNSTLDDLAR
                     EVLALQGRKVMPDPETEKGFYYRSDHFEFAKQGVPALYLDTGTEFVGKSPEFSKQKRE
                     EYTNNDYHKPSDEVKPDWDLTGAAEDARLLLAIGHRVAEGSRFPEWKPGTEFKAKRDA
                     TMRAAAGRASK"
     gene            complement(17991..18557)
                     /locus_tag="VD968_11325"
     CDS             complement(17991..18557)
                     /locus_tag="VD968_11325"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HYE15023.1"
                     /translation="MAGSFRILGIAGSLRKASYNRAALRAAQGLAPEGAEIEIFDLDG
                     IPPFSEDDEQNPPARVKELKERIRAADAILFVTPEYNYSIPGVLKNAIDWASRPYGQS
                     AWDGKPVAVMGASIGALGTARAQYHLRQVFVFLNMHAVNQPEVMISNASQRFDGDGNL
                     TDESTKEHIARLLTALVAWARRLGASRG"
     gene            complement(18617..19045)
                     /locus_tag="VD968_11330"
     CDS             complement(18617..19045)
                     /locus_tag="VD968_11330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HYE15024.1"
                     /translation="MANDSLRNTWAPRLLSLLRIASGFLLMQHGLQKVFGLLPRPAPP
                     GAPAAPPFSFQPFTLAGISGMLELVGGTLLIIGLFTRPVAFILSGLLAAAYLIAHAPR
                     GFWPILNGGELAALYSFVFLYMAAAGGGPWGLDGIMRRRG"
     gene            19383..22010
                     /locus_tag="VD968_11335"
     CDS             19383..22010
                     /locus_tag="VD968_11335"
                     /inference="COORDINATES: protein motif:HMM:NF023260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3352 domain-containing protein"
                     /protein_id="HYE15025.1"
                     /translation="MTKIAIHARLTVSLVAALLLAGAAPPSPAQRRRAARRQPQPAAP
                     RPAATPRPQAPARPNEPAKELAAEPRQQQQRPETDLPVEEILAEDSYGVYAEVRRVGQ
                     VVEGEEMKMALGAVRLIGDAADRKLADLAAFVSENSEPLSEALVSVAAMPTRSKLPTV
                     LVSLKMASPREAAAFEPKLRAFLSGVLPPKAPAEGAARGARASRKPSERPKALAPGFV
                     LRRAGSLLLAGDSNFTLKSLSGDGAAPLSQSVRFQSARNRFSSEQLFVYFDTTHVQEG
                     WAVQVQKEQEERERRERDRQQAEGGGPGDDYDVMIATEPPPPPKPVAGKRGEGPAGEI
                     PQTRSVGVVVTPPPAAGTGPAAEVVAGPQAEVSVVAPVGKVEDGGAGDGKYDAPPEAA
                     PLTEEQKVAGRMMGVTRHLVGGIPRIPGTVAVALGLEGGSVALRVAVDNPPEGNVNVI
                     PFLPNIVSGPPVTSETAAVAPADSDVFVNVSLDWERIFNSMMGTAASTEVMAGAGITV
                     PTAADVIVGPSGEGDKPEEKRPTAEATVEAVEKIFGFKFKEDLIPALGNEVAVSMPSK
                     LWMEPFRINRRSGPKAEEKDAEPGFVVLVALNDAEKVRKIFPRVLAALSFVAPGAPAA
                     AERREGFDIQSAGGFYYAFIDNYLVLGGNIKSVRHVVDSRARNDTLAATNSYRDATAW
                     QARQRLLHAYLSDALMRKAIEDTKKTAEASSDPLVQAMLARLDLQPEPASYSATNEGD
                     VLLHELRLPVNLIKVYAAAVVIGSKESPVVTNEMMAVFALSRLRDAEDSFRDMEGKGR
                     YGTLEELVAEELVEKGFAQHVEYKIELTAVGDRYEVVATPKSYGKTGRRSFYLDQSGI
                     IRGADHKGQPAKPDDPPVD"
     gene            22016..22480
                     /locus_tag="VD968_11340"
     CDS             22016..22480
                     /locus_tag="VD968_11340"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF015048.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HYE15026.1"
                     /translation="MEELSLQERYAPRGACFGCGPANERGLRIRSFAEGGEYVAEWRP
                     EPQYEAYPGMLNGGIIGALLDCHSNWAAAHHLMLRAGAERPPCTVTADYSIKLLRPTP
                     TDVPVKLTARVVESKDDRAVVEAEITAGGKQTAACRGTFVAVKPGHPAYHRW"
     gene            22501..>23147
                     /locus_tag="VD968_11345"
     CDS             22501..>23147
                     /locus_tag="VD968_11345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15027.1"
                     /translation="MNLARRSRFLILLALMSLPCAADARGQTLERLREDYARRFMEPE
                     PHMALAKYFRDSGNRLQAFYILETARRGRFEREEFDAAFREHFLGLKPLDKSPAAEAK
                     LLAELKLNPDSHETLVALADIHISREEWAKAKEYLGKLVARHPEHFEDAQALAEVLDR
                     EGDEAEAQRILRDWARSHPETAEAYRVRAAEFSEDAAKAKPILTEAMKKFPRDAS"
BASE COUNT         3691 a         8010 c         7815 g         3631 t
ORIGIN      
        1 cggctgctca tgcctacgag cgcggtggtg acgccgggcg tcgagcgcac gaactgtatg
       61 gcggtctgcg cgtcggtcgg gagcgagcct aaggggcggc gtatgtgctc gggcaaatct
      121 tgcgcgacct tgccctggag gatcgaggcg ctggcgacga ccgtgacgcc cagcgccttc
      181 gcggcttcga gcaccgagac gctcgcaccg cggaagggct ggttgtcggc gacgagcgcc
      241 tcgggcatgc cgaggttgaa ggggagttgc acgaagcgga agccgtgaga gtctgcgccg
      301 cccgcggcct cgcgggcgag ctcgaccatg cgctcaagcg ggtggtggcc gcgcgagccc
      361 gcctgcgcgc ggaagccgtt ccacgtcgca acgccgtagt gctttacgcg cccggccgcg
      421 cgctcgcgct cgagctgctc gaaggccgag cgaaggcggc ggtcgaactc ttcgcgcccg
      481 agggcctgaa gctgcgtctc cgggttgtgc acgtagtaaa cgtcaatcgt ctccagacgc
      541 atgttccgga gcgactgcgc gacctggtgc tcgaggtagc ggggcgtcat gcagtggctg
      601 cccgcgacga tgtcctcgaa ggaggccacg cccgcgcgca cgaaggtctc ctcgatgtag
      661 gcgcgcaccc ccgactgccc ggcgggcggc gcgccgtcga agggcaggta gccgcccttc
      721 gtgcagacga cgatctcttc gcgcgcgaag ccgccgcggg aagtcagctc ttcgagcgcg
      781 gcgccgacgg agcgctcgct gcgctggaag cggtagttgg cggccgtgtc aatgacgtta
      841 gcgccgagct cgacggcgcg cgtgatcgct tcccggtagc cgcggtctgt ctgctcgtcc
      901 cagttgccga ggtacgtgcc gatgcctacg gacgagagcc agaggccctg ctcgaagcgg
      961 aagtggcccg cgccggccgc ttcggggaag cggccgcggt agcgctcagt cccctcggtc
     1021 gtggcgaagc ccttcagagc catcacgaaa tacccccgcg ctttgttctg ggaattgccg
     1081 cgcgcaagtt tagcacgggc gcgccccgca gggtgccgcg cgggcgcgcg ttgtggtagg
     1141 gtttaggcgc tttgacccgc gagcacgcac aagaccgcga gagggccgtg tcgctcgacc
     1201 tgccggaggg ggagctgcgc gagctttcgg aaacgttccg ccgcgcggcg ctcgaactga
     1261 tgagcgagcc ggaggcgctg cccgtcttcc ccgaaacttc ggccgaggcc acggcgcgcc
     1321 tcttccgcct gccgctgccc gcggagggcg tcgggctctc ggcgctctcc gaagacttcc
     1381 gccgcgtcgt gagtaacgtc cggcagaaca accacccgcg catgttcggc tacgtggctt
     1441 cgccggccgc gcccgcggcc gtcttcggcg attgggtcgc gtcggcgctc aattcgaacg
     1501 tgacctcgtg gcggtcggcg ccggccgcgg ccgaagtcga gcgcaccgtc gtcggctggc
     1561 tcgcggagat gatcggctac ggcggcggcg ggggccgcga ctgcggcggg ctactgacga
     1621 gcggcggctc gatggcgaac atgatcgcgc tcttcgtcgc gcaccgatgg caactgcgcg
     1681 cggctggcgt cggcagcgca ggcgcgcacg acgtctcgcg tgaagggctc tggggcgcgg
     1741 gcgcgccgat gacgatttac gcctccgatc aggttcacct ctcgataccg aaggcggcgg
     1801 acgtgctggg gttcggccgc gcccacgtgc gcgtcgtgcc ttcgggcgac gatttcagga
     1861 tggacgtgcg cgccctcgcc gagcgcgtcg aggctgacaa ggccgccggc ctgcgcccct
     1921 tctgcgtcgt ggcgagcgca ggcaccgtgg cgaccggcgc cgttgacccg ctcgccgaag
     1981 tggcgcgagt ggctcgggag cgctcgctgt ggttccacgt tgacggcgca tacggggcgc
     2041 tggcgcgctc cgacgcatcg aagagcgcgc tcttcgaggg gctcgaagag gccgactccg
     2101 tctcgctcga cccgcacaag tggctctacg cgccgctcga ctgcggctgc ctgctcatgc
     2161 gcgaccccgc gcgcgcgcgc gccgcgttcg aggggacgga agagggctac ataagagttt
     2221 tcgagcgcga ggcggacgag gctttcgcct tctgggacta cggcgtcgag ctttcgcgcc
     2281 cgttccgcgc gctcaaggtc tgggcgcttc tgcgctacta cggggcgcgc cgcgtcgcgg
     2341 cctgcatagc cgaggacaac cggctggccg cgcacatggg ggaactggtg cgggaggccg
     2401 aagacttcga gctgatggcg cccgtgacgc tgggcatctg ctgcttccgc tacgtgcctg
     2461 cggagtgggg aagagagccg ggcgaaaact ccgatgcccg gctcgacgag ttgaacgcgc
     2521 gcgtgatgca ccgcgtgcag cgcggcggcg aggcttacgt ctcgaacgcc gtcctgcgcg
     2581 gccgcttcgc gctccgcgcg tccgtaacaa atttccgaac gacgcggcgc gacctgcggc
     2641 tcacgctcga cgtgatacgc cgcgccgcgc gcgaatgtct aaacgagggg gcttgagtaa
     2701 agatttcatg tcggcgatac aaagggttac gaagggcgag tacgagcggg agttgcagac
     2761 ggccatagag ctggcgcgcc gttcgggcgc ggcggcgctc tccttctacg gcggccccat
     2821 aagggtcgag cacaaggacg agcttaacga gccggttacg caggccgacc gcgccgtcaa
     2881 cgagctgata gtgcggggcc tgcacgatgc cttccccgaa gacggcatac tggccgagga
     2941 gtccgtggac acggagcggc gcctctcgcg cgagcgcgcc tggatggttg acccgctcga
     3001 cggcacgaag ggcttcatcg ccggcacggg cgacttcgcc gtgcagatcg gcctcgccgt
     3061 cggcggcgag agcgtgctcg gcgtcgtata tgcgcccgcg accgacgtgc tctactgggc
     3121 cgcgcgcggc cacggcgcgt gggtcgagcg cccgacctcg gaggccggag agagcgtcat
     3181 gtgcgagcgc ctgggcgtca ccgacgagaa ggacttgacg cgcatgcgcc tcgtcgagag
     3241 ccgctcgcac cgcagcccgc gcatggacag ggtcgtcgag gagctcggcg tgcgcgccga
     3301 agtaaagcgc cactccgtgg gcatcaaggt cgggctcctc gtcgagcggc aggccgacct
     3361 ctacatacac ctctcgggca agacgaagca gtgggacacc tgcgcgcccg aggccatcat
     3421 gcgcgaggcg ggcgggaaat tcacagacct ctggggcgag cccatgcgct acaacacgcc
     3481 cgacgtgtac aaccacaacg gcttagtcgc ctcgaacggc gcggcgcacg acgaagtcgt
     3541 cacgcacctc cgccgcctgc tcgccgagtt cggccgcgag cgcgtcgagt agctttgcag
     3601 tcatcaggta attcaaattc gcgctaaagg gggatggaga tgatacggaa aggttctgcc
     3661 gtctggcagg gaggcataag ggacgggcgc gggacggtct cgacggagag cggcgtgctc
     3721 tccgacgcgc agtattcttt ctcgacgcgc ttcgaggaca gcgccgggac gaaccccgag
     3781 gagctcatcg gggcggccca cgccggctgc ttctcgatgg cgctctcgaa gcagctcgaa
     3841 gacgccggca tgaaggccga atccataagg acgaccgcga ccgtaaggct tgagaagacc
     3901 gacgccggct tcgccatcac taaaatccac ctggacgtta cggcgcgcgt ccccggcggc
     3961 gacgatgcca agttccagac cgcggccggc aaagcaaagg cgggctgccc cgtctcgcgc
     4021 ctcttcaacg ccgagataac gatgagcgcg aagctcgagg cttaagagat aaggaaggga
     4081 gggcggccga tggccggaga cgaactggaa gcagcggggg cgcagacgaa ggccgtccac
     4141 gcggcgcgcg gcgagaaccg cacgcgcgcc gtcgcccctc ccatctggca gacgagcgcc
     4201 ttctcggccg actcgtccga agagttcgcc gaagtggcga agtccgtgcg ccccgccgag
     4261 ttctacacgc gctacggcaa cccgacgcac aagcaggtcg aggcgaccgt cgccgcgctc
     4321 gaaggcggcg aggccgtgct cctgacctct tcggggatgg gcgcggtctt cgcggccgtc
     4381 atgtcatcgg tctcggccgg cgaccacgtc gtctcgcagc gtagcctcta cgcgggcacg
     4441 gagacgctga tgaaggagct tcagcgcttc ggggtctccg tcacatacgt tgaccagacg
     4501 agggcggagg atttcgccgc cgccctgcgc cccgagacga agctcgtcta tgccgagacg
     4561 cccacgaacc ccctgatggc gctcactgac ctgcgcgccg tcgcgcacgc cgcgcgcgaa
     4621 cgcggtataa cgaccatcgt tgacaacacc ttcgccacgc ccgtcaacca gcgcccgctc
     4681 gacctcggga ttgacgtttc cgtccacagc gcgacgaagt acctcggcgg ccaccacgac
     4741 ctgagcgccg ggtgcgtagt ctcctcgcgc gagttcgtcg agcgcgcttg gcgcttctcg
     4801 ctcgtcgccg gggcgacctt gagccccttc gacggctggc tcctcctgcg cggccttcgc
     4861 acactcggcc tccgcgtcga gcgccacaac tctaacgcgc tcgcgctcgc gcgcttcctc
     4921 gaacatcacc cgaaggtcga gcgcgtctat taccccggcc tggagtcgca cccgcagcac
     4981 gagctcgcgc gctcgcagat gagcgggttt accgggatgc tgagcttcga gcttgcgggc
     5041 gggttcggcg gcgccgagcg cttcatctcg tcgctcaggc tcgccacata cgccccgagc
     5101 ctcggcggct acgagacgct cgtcgtccac cccgcggcca tgtggggcct gcaactctcg
     5161 cccgagcaga agactgagat gggcgtgggc gccggactgg tgcgcgtctc ggtcgggctc
     5221 gaggacgagc gtgacttgct ggaggacttc tcgcgcgccc tcgacgcgtg acgcccggcg
     5281 caatgagctt cacgacgacc gtcatgctcg ccgcggccgt gctcttcgcc gcgaccttcg
     5341 tgcgctcggc cgtgggcttc ggcgacgcgc tcgtggcgat gccgccgctc gcgctcctgc
     5401 tcggcgttaa gacggcgacg ccgctcgtgg cgttcgcggc ctccacgatt gcggtcgtga
     5461 ttctctcccg acagtggcgc agcgttgacg tgcgctcgac gtggcggctc gtagtctctt
     5521 cgctcgccgg catccccttc gggcttctgc ttttgaagct cgcgcccgag gcgcacgtaa
     5581 agttgttgct cggcgcgctg ctcgcagcct acggcctcta cgggctcgtg tcgccgcggc
     5641 tccccgagct gcgcggcgag cgctgggcct acgccttcgg cttcgcggcc ggcgtgctcg
     5701 gcggcgcgta caacacgaac ggcccgcccg tcgtaatcta cggcgcgcta cggcgctggc
     5761 cgcccgagca cttccgcgcg acgctccagg gctgcttcct cgtcacgggc ctgatgatcg
     5821 tcgtcggcca cggggctgcc gggctctgga cgccgctcgt cgtgtggctc tacctcgcct
     5881 cgctgccggg catcctcctc gccgtctggc tcggcgcgct gaccaaccgc agaatcccgc
     5941 gcgcggcgtt cggccgcgtc gtatatgctt tcgtggccgt gatgggcgcg ctatttctga
     6001 ttcagttctg aagggtgaaa gaggatgagg aagcttcact accaccgcgt tgacgtgttc
     6061 accgaccgcg ctttcggcgg gaaccctctg gccgtcttca cgaacgggcg gggcgtctcg
     6121 gccgagacga tgcaggccat tgcgaaggag ttcaacctgt cggagacgac cttcgtcctc
     6181 ccgcctgacg acccggcgca cgactggcgc gtgcggatat tcacgccggg cagcgaactg
     6241 ccgatggcgg gccaccctac ggtcggcacc tccttcatcc tagcccgcga gcacctggtc
     6301 gagacgaagc aggacggcga ggttctcatc acgctcgaag agggcgtcgg gccggtcccc
     6361 gtgcggctag agttcgaggc gggccttccg gcctacgccg agatgagcca gccgctcccc
     6421 actttcggcc cgcgcttcaa agacccgaag gccatagccg acatgctctc gcttgaagta
     6481 gcggacgtga cgaacacggg gctgccctac gaggtagtct cctgcggcgt ccccttcctc
     6541 ttcgtctgcg tgcagggcct cgaacagatg cggcgcatac gcttccgcac ggacgtgttc
     6601 gagcgcgtcg cggccgaggt gggcgtcccc ggcctcttcg tcttcgcacg cgaggtcgag
     6661 tccttcgagg cgcaaatcca cagccgcatg ttcgcccccg gcgcaggcat cctcgaagac
     6721 ccagccacgg gcggtgccag cggcccgctc ggatgcttcc tcttccgcca cggcgccgtc
     6781 tcccgccgtg cgcccgttaa cttcgtgagc gagcagggga tagagatggg ccggccgagc
     6841 tacatacgga taaaaatcga gcacgagggc gacgagataa ccggcgtcaa ggtcggaggc
     6901 aagtgtcatt acatgggcga gggcttcatc gaagtctgaa aacgttcaac agtcggcccg
     6961 tcaacaagtt agacggatta cgcctcggca tgaatttaag actcacgcca aggcgcaaaa
     7021 gttttgtgac agagttcgag gagggctaac cttagcaggt gagcggttta gccccttccc
     7081 ggccttcccc cggccagtcc cgcctcaaga attcctcaag gggcttatct aattataggg
     7141 gcgacagtta gggggcgcac gggcttctgc cggcccgtcc ccgtttcaat agaaagatga
     7201 cagccctgaa gcccaacttt atcagcgcct cacgcggaag gaacagaatg actcacacgg
     7261 cgcaaatcat ccccgaaaag gttacgccgc ccttcgagcc gccgcccgtc acgcgcgagc
     7321 gcctgctcag gacgctgggc gagagccttg atacctgcaa ttccacgata attcacggcc
     7381 gggccgggac gggaaagacc atgctcgcgg ccgacttcgc gcgccagtgc tcgcgcgccg
     7441 tggcttggta caaactcgac gcgccggact gtgagctgtc ggttttcttc cagtacctct
     7501 gcgccagcat cgccgagcag aggccgggct tcgggcagag ggttctggag cgcgtcggcg
     7561 agcagccggt cgcggcgggc gacgtgccgc tgctcgtcga atgcttcgtc tatgaactgt
     7621 tggagtcgaa cgagccgctg ctggtcgtca tagacgatct gcacctcgtc tatgacgccg
     7681 agtggatggt gcctttcttc cggcgcctgc tgccgctcct gccgcgcgag gttcacttct
     7741 gcctcatcgg caggagcctg ccgccgacgc cgctctggcg catgcgctcg aagcagacgc
     7801 tctgcgtcgt tgacgaatcg gcgctggcct tcacgctcgc cgaggcgagg acgctcttca
     7861 cgcgctacgg gctgccggca gagcgcgccg acgcggcgct gttgcagacg cgcgggcgcg
     7921 ccgcgacact agacgcgcac gccgcggccg cggccgacgc cgccgggcgg ccccttacgc
     7981 cgcgctcgcg tgcgggccac acggagcgcc cgctcaggct cgtcaagggt tttaggaagt
     8041 cttcgatggg gacggcctga acgcacaggc cgccccctgt atttcctcgc ttacggccag
     8101 cgccgacgga caagaagtac gggcggcgcg gcccgtgaaa cgggcgggcc gcggcctgcc
     8161 gcttcacggg ccgcgttccg tcgaacctct tttttgatat atactgcctc gccgcccgac
     8221 gcgcccgtgc cgcagcaccc tttagtgtcg agagcccacg caacgagtta cccgctaccg
     8281 cgaggctcga cgatgacaaa catgccccag cgccaagaag ggacgcagcc cgacggcccg
     8341 acgacgcccg tagtcttcaa gggcgacgcg ggcgcttcgc cgctgcccac cttcttcctg
     8401 cgcacgaagc tactgccgcc gcggcccgcg ccgtcgctcc tacagcggcc gcgcctgacc
     8461 gagcgcatgg agcagaacct cgcgcacgcc gtcacgctcg tcacggcgcc ggccgggtcg
     8521 gggaagacca cgctcgtcgc agacttcgtg cgcaaccggc ccttcgtctg gtatcagctc
     8581 gaccacacgg actcagaccc gctcgtcttc ctcggctacg tcgcgcacgg catacagcag
     8641 atagtccccg gcttcggcgg cgccacgatg tcttacctgc aggagtcggc caaggagctc
     8701 gcgcagcagc cgcagcgcgc cgttgacgtg ctcttaaacg aagtgctcga ccgcgtcgag
     8761 cagcagttca tactcgtcct cgacgactac caccacctcg gcacggacac gcccgtgcac
     8821 cgcgtcgttg accggctgct cgcctacctg cccgacctga tgcacgtcgt catcatctcg
     8881 cgcgacatgc cgccgctggc gctggcgcgc atgcggacgc aggcaagcct ggccgtcata
     8941 gaccgccagg agcttctttt cacggacgag gagacgcgcg agctgttccg cgaggtcttc
     9001 gatctggagc tcacgcccga gcagctcgcc gagtaccgcg agcgcacgca cggctggata
     9061 accgcgctcc agctcgtccg ccaggtcgcg cagcggcagg cgctcgcctc gggcggggcg
     9121 gcggctgcgc ccgatctcgt agaagtcctc cgacaatccg agcgcgacat cttcgactac
     9181 ttcgccgaag aggtcttcgc tgacgagccc gaagaggttc gcgccttcct gctgcggctc
     9241 tcgctccttg agagaatcga gcccgatacc tgcggccggc tctacccgga ggcgcacagc
     9301 gcggggctct tacagtcgct cgcgcgccgc aacgtcttcc tgtcgctcgc ctcggacggg
     9361 cgcggcgaag agtaccgtct ccacccgctc ttccgaagct tcctgcaacg ccgcttccgc
     9421 gccgaggccg gccgctcggc cgtcgccgcc gagcactcgc gcatagcgga cttcttcctc
     9481 gaaagcgaga agtgggaaca ggccatgcag cacctgctgg ccgccgaaga cttcgaccgc
     9541 gccgccgaga ccatcgccgc gcgcggcggc gagtgggtct ccgctggcgc gctggcgtcg
     9601 ctcgcggcct tcgccgacgt gctcccgaag gccgcgctcg aagcgcaccc ccgcgctctc
     9661 gcgcaccgcg cagaggtcgc gcgcctccgc gacgaagagt ccgcacagcc gctctttaac
     9721 cgcgccgccg cgctgctcca cgagcagggc gaccgcgagg gcgaggccga ggcgctgcac
     9781 tcgctcgcaa caatcgcgcg ccgccgcggc gagtgcgaga cggccttcgc ctacctggac
     9841 cgcgcgacgg agttgaccga cgagcgctcc gtagtccgca ccaagtgcgg caacacgcgg
     9901 ggcctgtgcc tagtcgcgtt gggtcagtgg actgaggccg agcgcgagtt ccgcgccgcc
     9961 ctacagtcgg ccgaggagca gggcgaccac tactacgcgc gcctgatctc gcacaatctg
    10021 ggccttccga ccggcatacg cggcgacttc gggcagggcc tgcgctggct gcgcaggatg
    10081 ctacgcgagg agggcgacgc ctcgacgccg atgccgcagg aggccgtcgc gcatttgaac
    10141 atcgcccgcc tctactggca catgggcgac ttcgacccgt gcgagcgcca cctcgaccgc
    10201 gccctggaaa cctgccagct ctttaacctg acgggcctcc ggggcgaaat ttttgagtac
    10261 tacgggaacc tccaccgcga gcgcggcgac ctcgcgcgcg ccgtcgagtt ctacgaccgc
    10321 gccgagcgcg cctacgacga ggccggcatc gagataaccc gcacggagct tctggaagag
    10381 cgcggcctgc tggcgctcga gatgggcgac ctgacgggcg cgcgcgccct gctcgaccgc
    10441 ctcatcgaag cccgcgcgcg cgacgagatg ctccgccagc gcactattct cgcccgcgcc
    10501 cgcgtgctca tcgcgcaggg gaagaccgac gaggcgcggg ccgatttgca gttcgcgctc
    10561 ggctacttcc gttcgatggg gctttactac aacgaggcgc aggcggcgtt gctcctcgcc
    10621 gtctgcgagc acgccgcggg ccaggacgtg gccgtcctcg ggcacctccg ccgcgccctg
    10681 gacttagccg cgcgctacga ctacgagtac tggctccagc gctccgtcgc gcgctacccg
    10741 caggtcttct ccgcgcccga ggcgcttgag cttctgccgg cggacctccg cgaacatcta
    10801 caggcggcgc cgccgccgcc cgccgctccc gcggccgggg cggtcgcgcg cccggcgctc
    10861 gtcgcgcagg ccccgccggc cgatttgacg gtcaacatgc tcggccccgt cgagatttac
    10921 agagaccccg cgcgcgcctt cgccgccgac gcctgggtga cccggagggc gcgagatatt
    10981 ctctgtttca tcgcatccag aaggcaccgc cgcgcatcta aagatacgat aatagatacc
    11041 ttctggggcg agtcggattt cggctcggtc gagaagaatt tccacccgac aatctcgcac
    11101 atacgcaagg cgctgaacag caaccagccc ttgaaacaga atttcctgct ctaccgggac
    11161 ggcgactacc agctcaaccc ggagttctcc taccggattg actcggagga gtttgaccgc
    11221 ctggtggcgg agggcgacgc ggcacggcgc gcccgcgagc aggaggctta cgtcaaggct
    11281 tacgaggagg cagtctccct gtaccgcggc gagttcatgt ccggcagcta cgacgagtgg
    11341 gccgaggagc agcgcaccta ctaccacgag cagtacctgc gcattctcga gatactcgcc
    11401 gacgccgccc agaaggccga agactgggcg cgctcgctgc agctcgctca gcgcatcctg
    11461 cgcgaagacc ccttccgcga ggacgtgcac tgccggctga tgcgcgcgca cgccgcccag
    11521 gggaaccgcg tggccgtcaa ggatcagtac gagacgcttc gaaagctttt gaagaaggaa
    11581 ctcggcgtcg agccggcggc cgagacgcag cgcacactca ggcagctcat ggggccgggc
    11641 ggctagggcg gccgcaaccc cgcgataagc aatttagaat gattccgtaa caaaagctta
    11701 taaaaggccc atgtataatt ttaagcttag gctcagacgc cagaacctcg cagcgacccg
    11761 ctcccggctc gggccgactc gcccgccggc agcccctaaa aaaagtaacg aagcctcaat
    11821 gagcacgagc aaacacgccg cggccagact gcgacgggcg actgccctgg cgctcgccgt
    11881 cctactcacg gcgctccccg tgagcgccgg tgtgagcttc caggtgacgc aggggctcac
    11941 gctcacgggc gccgacggca tcttcttcga gaacccgaac gggctgaccc tgacgggcgc
    12001 cgacggctac ctcgccttcg acgccaacgg catcacgcgc gtgggctccg acggcctgac
    12061 cctgacgggc gccgactgga agtttaccgc gagggcggac ggcgtgagct acacgggctc
    12121 gaacagctac gtcgccacgc gcgccgacgg cctgaccttg acgggcgccg acggcttgac
    12181 tctcaccggc gccgacggcc tgacgctcac cggcgccgac gggacgatgc atcaggtcaa
    12241 ctccgtcgtc ttccgcgagc cggcgggcct gaccttgacg ggcgccgacg gtctgacgct
    12301 tacgggcgcc gacggcgtgg agccgaacgg gagcgacggg ctgacgctca cgggcgcgga
    12361 cggtctgacg cttacgggcg cggacagcgt gacggtcaac acggccgggc aggcggtcgt
    12421 gacgacgacg gacgggcagg tgctctcggt ctcgccgaac gggctgacct tgacgggcgc
    12481 cgacatgctg cgtgtcgtgg gcgccgagaa cgtagccatt tatggcgtgc agggtttctc
    12541 gctcgcgggc gcagacgggc tgccgctggc cgggcccgag aacgcgccca actccgggct
    12601 catgagcctc gaccccgagc tcgcgctgat gctcgaccgc atgtcggacg acagcaacgt
    12661 caacgccgtc atcgtctatc accgccccgt cacggagacc gacatactga ccttgcaggc
    12721 catcggcgtg ctcggcggca cgcgctacca gtcgctcccg atggtggccg tcacgactac
    12781 gaagaggaag ctcgacatca tcgccgacct cgccgccgtc agaaccatct acggcgcccg
    12841 cacattggag tggagcgcgg ccgacaacag ccgcgagcag acgggcctgc tgcgcgcgcg
    12901 ctcggactcc gagcttctta gcctcggcgg cgggctcgcc cccgagggcg acggggtgac
    12961 ggttgccgtg ctcgacacgg gcgttgacgc gacgcacgaa gacatcgccg gccgcgtcgt
    13021 cagcaacgtg aagctcgcag actttcaggg cagccagata ggattctcgc cgccgctcaa
    13081 cgtcgagggc ttctcgacga cggatcaggc cagcggccac ggcacattcg tcgggggcat
    13141 catcgcgggc gccggcacga agtcgggcgg caagttccgc ggctacgcgc cgaaggcgcg
    13201 tctcgtgggc ctgagcgccg gcgacgcctc gctcttcaac gttctcgccg gcttcgacta
    13261 ccttctctcg aacccgtcgc tcggggttcg cgtcgtcaac tgtagcttct ccgcaaacac
    13321 cgtctatgac gagaacgacc ccgtcaatgt cgcgacgcgc atgctggtcg agcgcggcgt
    13381 caacgtcgtc ttctcggcgg gcaacacggg gccgggcctg cggacgctca acccctacgc
    13441 ggcggcgccg tgggtcatct cggtcggcgc gaccgacggt gcgacgggcc gcctcgctaa
    13501 cttctcctcg cgcggcgagt tcgcgagccg cacggcgcgg ccgactctgg tggcgccggg
    13561 cgtgagcgtc gtctcgctgc gcgcctccgg gacgaacgtg acggggacga cggggctgcc
    13621 ggcagacctg acgcagctca cgccgtcaga gcttcagcac tacacgagcg cttcggggac
    13681 gagcttcagc gcgccggccg tggcaggcac catcgccctc atgctcggcg tgaacccctc
    13741 gctcacgccc gcgggcgtgc gcgacatcct acagcgcacg gcgacgccga cgccggccta
    13801 ctaccgtcac gaggcgggcg ccggcgcctt gaactcgcac gccgccgtgc tcgacgcggc
    13861 cttccccgac cgccacatcg gctacttccg cgccacgctc gaccgcgggc aggtgcgctt
    13921 catacgcgaa gcgtcgcaga tcttcgagaa gacgctcgcg cccggcacct ccgcgcagtc
    13981 gtcgttcgcg gtgccgaaga atgccgtcta tgtctcctcg caggtcgcgt gggggccggt
    14041 tgtcagccct aacgacctgg ggatgtcgct cgccgacgcg tcgggcgccg tcagggccga
    14101 gtcgaactac ctgaacctgc cgggccttac gggcaagcgc gagcgcgtct tcgtcccggc
    14161 gccggaggcc ggcgagtggc gcgtgcgcgt ctaccacacg ctgggcgcgg gctttacctc
    14221 gcagggcttc cgcggcgtgt tcgagacggc gcgcgttgac tacgcgccga ccacagacac
    14281 ggcgaagctc gaccccgcga cgcaggccaa catacgcacc gccgtccgca ccttcaccat
    14341 gtggcccgac ggggcgcgct tccgcccggg cggcaacgtc aagcgctacg agctggccga
    14401 ggcgctcgtc tcggcgggcc gcgcgccgca gtacatgccg ggcgtcccga ccttccgcga
    14461 cgtgaccgac cgcgccacga tgaacttcgt cgagagcgct caccgactct tcccggacgc
    14521 gcggcccggc tcgaacttcc gccccgacgt gcccaccagc cggctcgtcg cggccgtggc
    14581 actggtgcgc gccgccggcc ttcagtccga ggccgaggcc aacatgacga cgccgctcga
    14641 cgtgcccgac gtggccggca taccaaccca gtaccgcggc tacgtcttcg tggcgctctc
    14701 gcgcggcctc atgtcgccgc tctcgggcaa gttccgccac aaccgcgacc tgacacgcgc
    14761 agagctggcg caggggctcg cggccctctt gaaactgtaa ataaggccgg aaaattgaat
    14821 gccaagcgcg gcggctcgaa gggggccgcc gcgttttttt cggggcgcga aaaaaaaatc
    14881 ggccgcctca agttttcctc aaccaccccc ttgtatgctc cgaccatgag ttaggggagt
    14941 tagggtgtca ctcgctcggc gtgcacggaa gtcgggaccg aggcatgccg cggcggggac
    15001 aagcggttcg gggggcggcc cgaaaggcag agacgggccg tcccccgaac tggacaaggc
    15061 cgtgcgggtg ggcgagaaac gaacgccggc cgcagaagtt ttcgagcagg ggaaagggct
    15121 tctaggcttg ccacgctacc agccgcgcgc gttgggcaag gcgcgcaccg gcggtcgtgg
    15181 cctggggggc ggtttcggag ggcagttctt ttgggggaaa gggttgccct ccgaaaccgc
    15241 atatttaagg tcttaaacga ctggggggcc gcgagaacgc ggcccggcca gctcaagccg
    15301 cgtcggaaag ggacagccga cgctactaga gcgggccggg ccgcgtgccg ttttagggcc
    15361 ggggtgtcgc ctgcggagcg ggcgagggct gcggggccgg ggcggggcag ggggcgacgg
    15421 tagcgcggtt gatgcggacg gggttcttgg gagtctcgcc gtcgagctcg gccgcgttca
    15481 tctggtcaac cgcctccatg ccgcgcgtga cgcggccgaa ggctgcgaac ttgccgtcga
    15541 ggtgcgagcc ctcgccgacg aggatgaaga agtgagtggt ggcgctgttc ggctcgtccg
    15601 agcgtgccat cgagaccacg ccgcgcacgt gcttgactgc gttcggctcg tccgggacag
    15661 tccggcgcgc gcgtttggct atctcgaccg tcaccttctc gcgcgtggag aggttcccgc
    15721 cctgcacgac aaagccgcgg acgacgcggc tgaacgtagt cgtgtcgagc gcgcccgtcg
    15781 cgaccaggtt caggaagttc ctgacgctct cgggcgcggc ctccgcgagc atctctatct
    15841 cgatcaggcc cgccgcggtc tcaagcctca cgcactggcc cgacatctgc gcgacggtcg
    15901 ccttgtcgaa aggctcggcc ggcgcctgct gctgccgggc gtcgggccgg gagttcgcct
    15961 tcttcggcgc ctcgtcggcg gccctcggcg cgcctggctg ctgctgcgcg cgggcgacgc
    16021 acgcggagca gcagcagacg agcgcgacgg ccgcgagacg ttcagcgagt ctcacttgga
    16081 agctctcccg gcggcggcgc gcatcgtggc gtcgcgcttg gccttgaatt ccgtgccggg
    16141 cttccactcg gggaagcggc tgccctcggc gacgcggtgg cctatggcga gcagcagccg
    16201 cgcgtcctcg gcggcgccgg tcaagtccca gtcgggctta acctcgtccg agggcttgtg
    16261 gtagtcgttg ttggtgtact cctcgcgctt ctgcttgctg aactcgggcg acttgcctac
    16321 gaactccgtc cccgtgtcaa ggtagagggc ggggacgccc tgctttgcga actcgaagtg
    16381 atcggagcgg tagtagaagc ccttctcggt ctcggggtcg ggcatgacct tgcggccttg
    16441 cagggcgagc acctcgcgcg cgaggtcgtc gagcgtggag ttgccgtcgc cgatgatgac
    16501 gacgtcgctt gtgcggcccc actggttcgc gccgtctatg tttatgttgg cgagcgtctt
    16561 gtgtagcggg tagagcgggt tctcggcgta gtgcttcgcg cccaggaggc ccttctcctc
    16621 ggccgtcacg aagaggaaga ggatggagcg cttgggcttc cgcggcagct tcgcgaagcc
    16681 ttcggctatc tccaacactt gagccacgcc cgaggcgttg tcaatcgcgc cgttgtaaat
    16741 ctggtcgccc tgtagcttct cgtttttgcc caggtgatcc cagtgggccg aatagacgac
    16801 gtactcgtcg cgcagcttcg gatctgagcc ctcaagcttg ccgactacgt tgttcgactg
    16861 aacctcgcgc agcgtgttct tcacggacgc gttgagcttg gcgttcaggg cgacgggctt
    16921 gaagtccttc ctgacggccg cgcgcttgag cgcgtcgaag tcatgcccgc cggccgagaa
    16981 aatctcgcgc gcccggtcga gcgtcaccca cgactctatg cctacgcgcc ccatgttctt
    17041 gtcagccctg atgatgtcga agttctcctg cccccagctc cccttgacaa cctcgaaggg
    17101 gtagccggcc ggccccgtct cgtggacgat gatggcggcg gccgcgccct tctcagaggc
    17161 tatctcgtac ttgtaagtcc agcggccgta gtaggtcatc gccttgccct tgaacatccg
    17221 ttcgtcgggc ttcgacgggt ccgaagggtc tgggacggcc gggtcgttga tgagcatgac
    17281 gatggtcttg ccccgcacgt caacgccctt gtagtcgtcc cacccgtact cgggcgcgac
    17341 caccccgtag ccgacgaaga cgaggtcgga gtcggagact ttcgtctccg cgacgttgcg
    17401 gcgcgagacg gccacgaagt cgtcggggaa cttcatgtca atgcgcttgc cgccggcctc
    17461 gacgctcatc gaggggtccg ccttcatgcc gacgagcggc accttctgga cgtaagtgcc
    17521 gtcggggttg ccgggcttca ggccgatgcg cttcatctgc tcggtcaggt aggcgaccgt
    17581 cagctcctcg ccgcgcgtgc cggggcctcg gccctcgaac tcgtccgagg agagcgcctt
    17641 cgtgtggcgg aggatgtcgt cggagctgat gctgtcgagc gcgggcttga gcgcggcggg
    17701 catcttctgc gcggcggcgt ccttccgctg cgcgctcgaa tcgtgagccc acgcggcgca
    17761 cgccagcgcg gcggccagag cgagaactgt cgagcgtgtc ttcatcgttt gcctcactgt
    17821 agaaagatgt cggaagggga ttcgtggaga gtttcttacc ggcggcacgg cgaagtcaaa
    17881 cggggaagaa ggataaggca gaaggcagga agcagtaggc agccagggcg agctcagctt
    17941 tgactgctta ctgctttccg ccttcagcct tcttctcccc gtctctgcgg ctatccccga
    18001 ctcgcgccga ggcggcgcgc ccaggcgacg agggccgtga gcaggcgggc gatgtgctcc
    18061 ttcgtgctct cgtcggtcag gttgccgtcg ccgtcgaagc gctgcgaggc gttcgagatc
    18121 atcacctcgg gctggttgac ggcatgcatg ttgaggaaga cgaagacctg ccgcaggtgg
    18181 tactgcgcgc gcgcagtacc gagcgcgcct atggaggcgc ccatcacggc cacgggcttt
    18241 ccgtcccagg cgctctggcc gtaagggcgc gacgcccagt caatagcgtt cttcaggacg
    18301 cccggtatcg agtagttgta ctcgggcgtg acgaagagta tggcgtctgc cgcgcgtatg
    18361 cgctccttca actccttgac gcgcgcgggc ggattctgct cgtcgtcctc gctgaagggc
    18421 ggtatgccgt cgaggtcgaa tatctctatc tcggcgccct cgggcgcgag cccctgggcg
    18481 gcgcgcagag cggcgcggtt gtaggaagcc tttcgcaggc tgcccgcgat gccgagtatc
    18541 ctgaatgacc cagccatgtg gtgatcctcc ggtgaattga tcctgcccaa aaccgtcggc
    18601 gggcgcccgc cctcttttag ccgcggcggc gcatgatgcc gtcgaggccc caggggccgc
    18661 cgcctgccgc ggccatgtag aggaagacga aactgtagag cgcggccagc tcgccgccgt
    18721 tcagtatggg ccagaagccg cgcggcgcgt gcgctatgag gtaggccgcc gccagaaggc
    18781 cggacagtat gaaggcgacc gggcgcgtga agagcccgat tatcaacagc gtcccgccga
    18841 ccagctcaag catccccgag atgcccgcca gcgtgaaagg ctggaacgag aaggggggcg
    18901 cggccggcgc gccgggcggc gcggggcgcg gcagcaggcc gaagaccttc tgcaagccgt
    18961 gctgcatcaa gaggaacccg gaggcgatcc tgagcaggct taagagcctc ggcgcccacg
    19021 tgtttcgtaa agagtcgttt gccatccgtc tgtgtcctcc gaaaatctag gggcggcgag
    19081 cattctgccg gtttaatttc acggcccttt ctctcttccc tcgctttatt acttcttgac
    19141 agccgggccg ccgctttggt cgccgcgacg tttgtacgat agtcgtggca acgacaattg
    19201 tcaagcaggg ctctgcacta cgccgcacgg tcgcgccttc cggccgtgcc cgaagacggt
    19261 tttggtgttc gcaacggggc gcgcgtgggt taaaatcccg cgctgcgggg ctccccggcc
    19321 cgcgagcttc tcaagcgggc tcggcggccc gcccttaccg ctcttcgggc tttacagaac
    19381 caatgacaaa aatcgcaatt cacgcacgcc tcacggtgtc cctcgtcgcg gcgcttctac
    19441 tcgccggcgc ggcccctccg tcgcccgcgc agaggcggcg cgccgcccgg cggcagccgc
    19501 agcccgcggc gccgcgcccc gccgccacgc cacgccccca ggcccccgcg cggccgaacg
    19561 agccggcgaa ggagctggcc gccgagccgc gacagcagca gcagcggccg gagacagacc
    19621 tgcccgtcga agagatactc gccgaagact cctacggcgt atatgcggag gttcgcaggg
    19681 tcgggcaggt cgtcgagggc gaggagatga agatggcgct gggcgccgtg cgcctcatag
    19741 gcgacgcggc cgacaggaag ctggccgacc tcgccgcctt cgtctccgag aactccgagc
    19801 cgctctccga agcgctcgtc tccgtcgcag cgatgccgac gcgctcgaag ctcccgacgg
    19861 tgctcgtctc gctcaagatg gcttcgccgc gggaggccgc cgccttcgag ccgaagctgc
    19921 gcgcgttcct ctcgggcgtg ctgccgccga aggcgccggc cgagggcgcc gctcgcggcg
    19981 ctcgcgcgtc gcgcaagccg tcggagcggc cgaaggcgct cgcgcccggc ttcgtgctca
    20041 ggcgcgcggg cagcctattg ctcgccggcg actcgaactt cacgctcaag tccctctcgg
    20101 gcgacggcgc cgcgccctta agccagagcg tgcgcttcca gtcagcgcgc aaccgcttca
    20161 gctccgaaca gctcttcgtc tatttcgaca cgacgcacgt gcaggagggc tgggccgtgc
    20221 aggtgcagaa ggaacaggag gagcgagaaa ggcgggagcg cgataggcag caggctgaag
    20281 ggggcggccc gggcgacgac tacgacgtga tgatcgcgac cgagccgccc ccgccgccta
    20341 agcccgtggc cgggaagcgg ggagaaggcc ccgcgggcga gataccacag acgcgctcgg
    20401 tcggagtggt cgtgaccccg ccgcccgcgg ccggcacggg gcctgcggcc gaggtcgtcg
    20461 cggggccgca ggcggaagtg agcgtcgtcg cccccgtcgg caaggtcgag gacggcggcg
    20521 cgggggatgg aaagtacgat gccccgcccg aggccgcacc ccttaccgag gagcagaaag
    20581 tggcggggcg catgatgggc gtgacgcgcc acctcgtggg cgggattccg cgcataccgg
    20641 gcacggtcgc cgtggcgctg gggctcgaag gcggctcggt cgcgctgcgc gtcgccgttg
    20701 acaacccgcc cgagggcaac gtcaacgtca tccccttcct gccgaacatc gtctcgggcc
    20761 cgcccgtcac ttccgagacg gcggcggtcg cgccggccga ctccgacgtt ttcgtcaacg
    20821 tctcgctcga ctgggagcgg atatttaact cgatgatggg cacggccgcg agcaccgagg
    20881 tcatggccgg cgccggcatc accgtgccga ccgcggcgga cgtgatagtc ggccccagcg
    20941 gcgaaggaga caagcccgag gagaagaggc cgacggccga ggcgacggtc gaggccgtcg
    21001 agaaaatctt cggcttcaag ttcaaggaag acctgatacc cgcgctcggc aacgaggtcg
    21061 ccgtaagcat gccgtcgaag ctctggatgg agcccttccg catcaacagg cgctcggggc
    21121 cgaaggcgga ggagaaggac gccgagcccg gcttcgtcgt gctcgtggcc cttaacgacg
    21181 ccgagaaggt tcgcaaaatc ttcccgcgcg tgctggcggc gctcagcttc gtcgcgcccg
    21241 gcgcgcccgc ggccgcagag cgccgcgagg gcttcgacat acagtcggcc ggcggcttct
    21301 actacgcctt catagacaac tacctcgtgc tcggcgggaa cataaagagc gtgcgccacg
    21361 tcgttgactc gcgcgcgcgc aacgacacgc tcgccgcgac gaactcgtac cgcgacgcga
    21421 ccgcctggca ggcccgccag cgcctcctgc acgcctacct ctccgacgcc ctcatgcgca
    21481 aggccatcga ggacacaaag aagacggccg aggctagcag cgaccccctc gtgcaggcca
    21541 tgctcgcgcg gctcgacctt cagcccgagc ccgcctccta ctccgccacc aacgagggcg
    21601 acgtgctgct gcacgagctg cgcctgcccg tcaacctcat aaaggtttac gcggcggctg
    21661 tcgtcatcgg ctcgaaggag tcgcccgtgg tcacgaacga gatgatggcg gtcttcgccc
    21721 ttagccgcct gcgcgacgcc gaagactcgt tccgcgacat ggaggggaag gggcgctacg
    21781 gcacgctcga agagctggtg gccgaggagc tggtcgagaa gggcttcgcg cagcacgtcg
    21841 agtacaagat cgagctgacg gccgtgggcg acaggtacga ggtggtcgcc acgcccaagt
    21901 cctacggcaa gacgggacgc cgctccttct acctcgacca gtccggcata atccgcggcg
    21961 ccgaccacaa gggccagccc gccaagcccg acgacccgcc ggtggactaa cttttatgga
    22021 agagctgagc ctgcaagagc gttacgcgcc gcggggcgcg tgcttcggct gcggccccgc
    22081 caacgagcgc ggcctgcgca tacgcagctt cgccgagggc ggagagtacg tcgccgagtg
    22141 gcggcccgag ccgcaatacg aagcctaccc cggcatgctc aacggcggca tcataggcgc
    22201 cctcctggac tgccactcga actgggcggc cgcgcaccac ctcatgcttc gcgccggggc
    22261 ggagcgaccg ccctgcacgg tgacggccga ctactcaata aaactcctcc ggcccacacc
    22321 caccgacgtg cccgtcaaac tcacggcccg cgtcgtcgag tcgaaggacg accgcgccgt
    22381 cgtcgaggcc gagatcaccg cgggcggcaa gcagaccgcc gcctgccgcg gcaccttcgt
    22441 cgccgtcaag cccggccacc cggcctacca tcgctggtga gactttcagg agcacgcgcc
    22501 gtgaacctcg ctcgccgaag tcgctttctc atcctgctcg cgctcatgtc tttgccgtgc
    22561 gcagccgacg cgcgcgggca gacgctcgaa cgcctacgcg aagattacgc gcggcgcttc
    22621 atggagcccg agccgcacat ggcgctcgcg aaatacttcc gcgactcggg caacaggcta
    22681 caggctttct acatactgga gaccgcgcgc cgcgggcgct tcgagcgcga ggagttcgac
    22741 gccgccttcc gcgagcactt cctcggcctc aagcccctgg acaaaagccc cgcggccgag
    22801 gcgaagctcc tcgcggagct gaagctcaac cccgactcgc acgaaacgct cgtcgcgctc
    22861 gccgacatac acatatcgcg cgaagagtgg gccaaggcga aagagtacct cggcaagctc
    22921 gtcgcacgtc accccgaaca ttttgaagac gcgcaggcgc tcgccgaagt cttagaccgc
    22981 gagggtgacg aggccgaggc ccagagaatc ctccgcgact gggcgcgctc gcaccccgag
    23041 acggccgagg cctaccgcgt ccgcgccgcc gagttctccg aggacgcggc gaaggccaag
    23101 cctatactca cggaggcgat gaagaaattc ccgcgcgacg ctagctt
//
LOCUS       DASPKR010000418         9682 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1353321, whole genome shotgun sequence.
ACCESSION   DASPKR010000418 DASPKR010000000
VERSION     DASPKR010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9682)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9682
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1353321"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..299)
                     /locus_tag="VD968_11350"
     CDS             complement(<1..299)
                     /locus_tag="VD968_11350"
                     /inference="COORDINATES: protein motif:HMM:NF024806.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15028.1"
                     /translation="MTYQANRLAAACVAAALLLLFDASARGAQRSGGGRKRQTTQQTE
                     VDVRARSHMEEGLRHADAGDWAEAVKSYKLALAVSPNFAEAHLNLGDAYMSAGNY"
     gene            complement(469..1278)
                     /locus_tag="VD968_11355"
     CDS             complement(469..1278)
                     /locus_tag="VD968_11355"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HYE15029.1"
                     /translation="MITCEESRKAFSPHLDGVLSREAGEALGEHLEICPPCRQDLDGL
                     RSLLRELALTPRPAPPADLATSIRTAVVIERAARGSRPPLTVSERVLRWVGPRLMPYA
                     VGAFYSMLLFVAVFGALRQQLQVLSNFAQAQQLESGMPYSATWADGRGGFDVTRPLSP
                     ELSVAARAPFTVESPTLNPRGALARMAWSPSTGGRPDDDDMVVVADVYGNGSASLAAV
                     VEGPRNRRALDELQDALRKNPAFVPASLDGRPQTMRVVFVLQKMNVDETSY"
     gene            complement(1664..2326)
                     /locus_tag="VD968_11360"
     CDS             complement(1664..2326)
                     /locus_tag="VD968_11360"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE15030.1"
                     /translation="MSFGEPIALRMEAELEGAAGAAASAEARSAEEQFLERLKRGDAA
                     AFNRLIEERHGDVYALLYRLTEDPEEARDLSQETFLQAFRNISGFRGDADLRTWLYRI
                     ALNQARNRWRWWKRRRRDRTVSLDAPASHSSETPLGATLRGRDEVDPEEQALRRERER
                     ALQTALRALSRPYREVIVLRDIEGLSYEEVALALEISVGTVKSRLSRGRTELRRRLES
                     SL"
     gene            2650..3471
                     /locus_tag="VD968_11365"
     CDS             2650..3471
                     /locus_tag="VD968_11365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15031.1"
                     /translation="MARTTKKRQRELKHDKFRDTTLGVADRLAHRYEGRGRTFLYAIG
                     AAVALVALILVFNWWSARRADAARLALGKAMEIAQAPVTTGTPMPGETGPTFPSERER
                     AQKAVEEFEKVRRDYGSPYSDIARHFAAVNMLTVERDRGLKELEELSRSGDSDIAARS
                     KFALAQAREADAQYDAAAALYQELLKQKDGPVSPNTLNLRLAAVHEKQGKKDEAVNLL
                     FQLVESARKAQGKDGKPAPESAVVRAAADKLQELSPERYAQLPAQPAPARGGLGF"
     gene            3507..4640
                     /locus_tag="VD968_11370"
     CDS             3507..4640
                     /locus_tag="VD968_11370"
                     /inference="COORDINATES: protein motif:HMM:NF016214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HYE15032.1"
                     /translation="MDNLTHSLVGLAAAKAGLERTSPCATAVCVVAANLPDSDIVALA
                     WGRAAYLEHHRGITHSLVGTLALGLFLPVVVFAAERAWARARGREARARLRGLLLSSL
                     ALSASHPLLDWTNNYGLRPWLPWDNSWIYGDLVFILDPWIWLLVGGAVFLAGATSRAR
                     KIAWGALALLVTVVLLVAPRRFGMEIPFGVYAVWFAALAVLVALHLSRLPARWGRRVP
                     AAALALLVLYWCALAVFHARAAAAAQVAAASLAAERGAGGVLRVAAMPTFASPLSWRC
                     AAETERATLRFDLSLGSGVGPGAVGNVLKLDKPSGADETAVLRASQNEHARVLLDFAR
                     FPVSTVRRDDAGRLLVQFVDLRFTEPSRQAPRGGSFALEVPVE"
     gene            4803..5954
                     /locus_tag="VD968_11375"
     CDS             4803..5954
                     /locus_tag="VD968_11375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15033.1"
                     /translation="MKRTTARRLPLLFVAFVALLALAPAASAQARGDARAALTTFPDA
                     QAVLYVNLDRLVNEALPRVMPPAEYQKMLAEPQKVGLDIRGLRHAVLGVRFAEGSQSP
                     IPEFVLLLHGDFNADTLLMAGRVGISAMKLESREETYGGKTISLLNVEKLMKGGGGEQ
                     QQADGQQQPEGGGSKPNPFPFPELAVTAYDSNTIVAGVPAYVRSTVDAMGGGQGRLRP
                     SILDLAAKDPQALWSLAAELPPGLPQMLQKTGMPSNAEVERIIGWLKGVSLSQGMDAL
                     NFTMRAAVMTDSPEHASAISGLIQMGATAATVALTQNMGKNPGPAAQQNRMALNALKT
                     FTNRVEGGTVLLGISVPQRVLAEVVKKEMTKKPAAATKAPRRRRGTRRR"
     gene            6032..6673
                     /gene="nth"
                     /locus_tag="VD968_11380"
     CDS             6032..6673
                     /gene="nth"
                     /locus_tag="VD968_11380"
                     /inference="COORDINATES: protein motif:HMM:TIGR01083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HYE15034.1"
                     /translation="MGNEDKRAREIIRLLKREYPDARCSLNYETPLELLVATILSAQC
                     TDERVNIVTADLFRKYRTCEDYASAPPEELERDIHSTGFYRNKAKAIQATCRALSERH
                     GGSVPRTLGELLQLHGVARKTANVVLGNAYGAPSGVVVDTHVSRLAARLGLSAEKMPE
                     KIEQDLNAVVPKKDWVGFPHLLIAHGRKICKARKPLCGECVLAALCPSAFRVA"
     gene            complement(6680..7645)
                     /locus_tag="VD968_11385"
     CDS             complement(6680..7645)
                     /locus_tag="VD968_11385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15035.1"
                     /translation="MITHLPPASTKRAAPRLSDGVPFNMNLKIETPRGFDLVRTISSH
                     GWSELLPFEWVNRETLLRVLDVGARPPVTVTITGDDGALNVRASRALNARERERVGRD
                     VRHMLRLDEGLDEFYSAIASDPDFGWIARDGAGRLLRSPTVFEDLVKSVCTTNCSWSL
                     TTKMVTALVQNLGRPAAGGRRAFPTPEAMAAEPVGFYRETVRAGYRSEYLREMAVRVA
                     SGEIDPEGWLESELPTAELKREMKRVKGVGDYAAENLLKLVGRYDVLALDSWVRGKFA
                     RVRNRGRACDDKKIARYYSRFGAWRGLALWCDMTKDWFEGEGRAG"
     gene            7691..8896
                     /locus_tag="VD968_11390"
     CDS             7691..8896
                     /locus_tag="VD968_11390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15036.1"
                     /translation="MNEKRQLTVLCLASYEKGQEFIRECKRLGCRTLLVTKHKLEGAD
                     WPREAIDETFYMPDEFSLEDLTKAVSYLARSREIDRVVALDDFDVETAASLREHLRVP
                     GMGDTTARHFRDKLAMRVKARDHGILVPEFVHTLNHAAIHEYVNRVPAPWVLKPRSEA
                     SAVGIKKVGSADELWPLLEELGDRQSYYLLEQFIPGDIFHVDSIVSEREVVFTALSKY
                     GLPPMEVAHGGGVFLTRTISRHSADAQALDALNRELLHTLNLVRGVTHTEFIKGHHDG
                     RFYFLETAARVGGANIAEVIEAATGVNLWREWAKIEMAGEQGGYEPPPRRDDYAGIVI
                     SLARQEWPDTSEFDDPEIVFRLRKRHHVGLLVASHDPGRVDWLLQSYSRRLLRDFSAT
                     LPAPDKPTS"
     gene            8910..>9682
                     /locus_tag="VD968_11395"
     CDS             8910..>9682
                     /locus_tag="VD968_11395"
                     /inference="COORDINATES: protein motif:HMM:NF001399.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase"
                     /protein_id="HYE15037.1"
                     /translation="MARDLTREFLLFLQVEKGLAAASVEAYRHVLAGLKAWAAERGRE
                     PQALDKAELTQYVMSLSRAGQSPRTVARALSAIRGFYRFLLVDGHIAKDPSAELASPQ
                     FGQKLPRFLTQEEVQRLIEAPDTSDPEGVRDRAIIELLYATGLRVSELVSLSAGSVRT
                     DAGVLHCTGKGSKQRRVPVGRSAVEWLLKYERARRILLQGRESQRLFVGRDGAPLTRQ
                     FVWAMLKKCAERAGVSGVSPHVLRHSFATHLLEHGADTRS"
BASE COUNT         1586 a         3377 c         3216 g         1503 t
ORIGIN      
        1 tcgtaattgc ccgcgctcat gtaggcgtcg ccgaggttca ggtgcgcctc ggcgaagttc
       61 ggcgagacgg cgagggcaag cttgtaagac ttgacggcct cagcccagtc gcccgcgtcg
      121 gcgtgccgca acccctcctc catgtggctg cgcgcgcgca cgtcaacctc cgtttgctgc
      181 gtcgtctgac gcttgcgccc gccgcccgag cgctgagcgc cgcgggccga ggcgtcaaag
      241 agcaggagga gggcggccgc gacgcaggcg gctgcgagtc tgttcgcttg gtacgtcata
      301 gaggctgacc ttcggggcgg acaggagtag ctctgcggag cgcggcgcaa tttatcacgg
      361 gaggacgccc gcgacaatat ttcgcgcagg agaaggaggg ggctgcgttg acgacggccg
      421 gcgccgtcgt caacgcagcc ccctcagaag ggctcaaatt tttttccgtc agtagctcgt
      481 ctcgtccacg ttcatcttct gaaggacgaa gacgacgcgc atggtctgcg ggcggccgtc
      541 gagcgaggcg gggacgaagg ccgggttctt tcgcagggcg tcctgtagct cgtcgagcgc
      601 gcgccggttg cgcggcccct cgaccactgc ggccagagag gcgctgccgt tcccgtaaac
      661 gtcggccacg acgaccatgt cgtcgtcgtc gggccgcccg ccggtggagg gcgaccacgc
      721 catgcgggcg agcgcgccgc gcgggttcaa ggtcggcgac tcgaccgtga agggcgcgcg
      781 cgccgccacg ctcagctcgg gcgagagcgg gcgcgtcacg tcgaagccgc cgcggccgtc
      841 ggcccaggtg gcgctgtagg gcatgcctga ttcgagctgc tgtgcctgcg cgaagttgct
      901 aaggacttgg agctgctggc gcagcgcgcc gaagactgcg acgaaaagca gcatcgagta
      961 gaaagcgccc acggcgtagg gcataagccg cgggccgacc cagcgcagca cgcgctcact
     1021 tacggtgagc ggcgggcgcg agccgcgggc ggctcgctcg atgacgacgg ccgtcctgat
     1081 cgaggtggcg aggtctgccg ggggcgcggg gcggggcgtg agcgctagct cgcgcagcag
     1141 cgagcgcagc ccgtctaaat cctggcggca gggagggcag atttcgaggt gctcgccgag
     1201 cgcctcgccc gcctccctcg acagcacgcc gtcgaggtgc ggcgaaaaag ccttccgaga
     1261 ttcctcacac gtaatcataa gaagagatgt cagatgctgg atgtcagatg tcgaaaaaac
     1321 tagcatctag aatctgacac ccggcatctg cttttctcag cccggatggc tggccgaccc
     1381 cggccgctcc cttttgaaag gaaacgactg tcgtgcgcat ggcctcgggc ggcgccccgg
     1441 ccgagttagc cttcggccgc cgacggtaac agaagaacgg gtgttgctgg cctcgttttc
     1501 aaaaaccgtc gccggccgcc ggcctctcgc ccgacgcgcc tccttccggc cgccgcctac
     1561 cgccgcttcc tgacccacct ggcaccgggg gttttagtta gaagccgggg cggggcagcc
     1621 atccgggctg aacgtagctg aaagctgact gctgacagct aacttacaaa gagctttcga
     1681 gcctgcggcg aagctcggtg cggccgcggg agagccgcga tttaactgtg ccgacgctga
     1741 tctccaacgc cagcgccacc tcctcgtagc tgaggccctc tatgtcgcgg agcactatga
     1801 cttcgcggta gggccgcgag agcgctcgca gcgccgtctg tagcgcccgc tcgcgctcgc
     1861 gcctgagcgc ctgctcctcg gggtcaacct cgtcgcggcc ccgaagcgtc gcgcctaggg
     1921 gcgtctcgga cgagtgggag gccggcgcgt ccagagagac agtgcggtcg cgccgcctgc
     1981 gcttccacca gcgccagcgg ttgcgggcct ggttgagcgc gatgcggtag agccacgtcc
     2041 gcaaatccgc gtcgccgcgg aagcccgaga tgttgcggaa agcctgtagg aacgtctcct
     2101 gcgagagatc gcgggcctcc tccgggtctt cggtcaggcg gtagagcagc gcgtaaacgt
     2161 cgccgtggcg ctcctcgatc aggcggttga aggccgccgc atcgccgcgc tttagccttt
     2221 caaggaactg ttcttcggcg gagcgggcct ctgccgaggc tgccgcgccg gcagccccct
     2281 ccagttccgc ttccatgcgg agggcgattg gctccccgaa gctcacgaac gtcctccgtc
     2341 aacggcccgg gagggtctgt cgggcggccc gtccacgccc gactcaaacc ttcgacaccg
     2401 cgccgccgca gtttgttcca ggaatatttt catcgcccga ggatttgatt ccgggggccg
     2461 cgcccgcgtt cccgtggcgc cccgcagccc cggctggcgc ggagcgtagc acgcgccccg
     2521 cggtcggtca aaccctttac attcgccggc ttgacaacgc ctccggcccg tcgttagagt
     2581 gaagcctttg cctcaaaccc cgtaaatgag aacgcacttc acagtgcggt cttgcaccag
     2641 gaaaaagcag tggcacgaac gacaaagaaa cgccaaaggg aactcaagca cgacaagttc
     2701 cgcgacacga ctctgggcgt ggccgaccgc ctcgcgcacc gctacgaggg gcgcggccga
     2761 acgttcctct acgccatcgg cgccgccgtc gcgctcgtcg cactcatact cgtcttcaac
     2821 tggtggagcg cccgccgcgc ggacgccgcc cgcctcgcgc tcggcaaggc gatggagata
     2881 gcgcaggcgc ccgtgacgac ggggacgccg atgccgggcg agaccggccc gaccttcccg
     2941 agcgagcgcg agcgcgccca gaaggccgtc gaggagttcg agaaggttcg cagggactac
     3001 ggctcgccct acagcgacat cgctcgccac ttcgccgccg tcaacatgct caccgtcgag
     3061 cgcgaccgag ggctaaaaga gctcgaagag ctgagccgct cgggcgactc cgacatcgcc
     3121 gcccgctcga agttcgcgct cgcgcaggcg cgcgaggccg acgctcagta tgacgcggcg
     3181 gccgcgctct accaggagct tctcaagcag aaggacggcc ccgtctcccc caacacgctt
     3241 aacctccggc tcgccgccgt ccatgagaag cagggcaaaa aggacgaagc cgtcaacctc
     3301 ctcttccaac tcgtcgagtc ggcgcgcaaa gcgcagggca aggacggcaa gccggcgccc
     3361 gagtcggccg tcgtgcgcgc cgcggccgac aagctgcagg aactgagccc cgagcgctac
     3421 gcgcagctcc cggcacagcc cgcccccgcg cgcggcgggc tcgggttctg aggtcgcggg
     3481 cgcggcgctc tcattaaaat ccccgcgtgg acaacctgac gcactccctc gtagggctcg
     3541 cggccgcgaa ggccgggctt gagcgcacgt cgccgtgcgc cacggccgtc tgcgtagtag
     3601 cggcgaacct gccggactca gacatcgtcg cgctcgcctg ggggcgcgcg gcatacctcg
     3661 agcaccaccg cggcatcacg cactccctcg tcggcacgct cgcgctgggg ctattcctgc
     3721 cggtcgtggt cttcgcggcc gagagggctt gggcgcgcgc gaggggcagg gaggcgcgag
     3781 cgcgcttgag aggactgctg ttgagctcgc tcgcgctgtc ggcctcgcac ccgttgctcg
     3841 actggacgaa caactacggc ctgcgcccgt ggctcccctg ggacaacagt tggatttacg
     3901 gcgacctcgt cttcatcctc gacccgtgga tttggctgct cgtcggcggg gccgtgttcc
     3961 tcgcgggggc gacttcacgg gcgcgcaaga ttgcgtgggg cgcgctcgcg ctgttggtga
     4021 cagtcgtgct cctcgtcgcg ccgcggcgct tcggtatgga aatccctttc ggagtctatg
     4081 cggtctggtt cgcggcgctg gccgtgcttg tcgcgctaca cctgtcacgg ctccccgcgc
     4141 gttggggccg gcgcgtaccg gcggcggcgc tcgcgctcct cgtcctttac tggtgcgcgc
     4201 tcgccgtctt ccacgcgcgt gcggcggcgg cggcccaggt cgcggccgca agcctcgcgg
     4261 ccgagcgcgg agcggggggc gtcctgcggg tcgcggcgat gccgaccttc gcgagcccgc
     4321 tctcgtggcg ctgcgccgcg gagacggagc gcgcgacgct gcgcttcgac ctgagcctcg
     4381 gctcgggcgt cgggccggga gccgtgggga acgtgctgaa gctcgacaag ccttcgggcg
     4441 ccgatgagac ggccgtgctg cgcgcctcgc agaacgagca cgcgcgcgtg ctcctggact
     4501 tcgcccgctt cccggtctcg accgtcaggc gcgacgacgc aggccgtctg ctcgtgcagt
     4561 tcgttgacct tcgcttcacg gagccgagcc ggcaggcgcc gcgcggcggc agcttcgcac
     4621 tcgaggtccc cgtggagtaa gcccggggtt aaaatgccgg ccagcggcgc ggaacctgaa
     4681 acctcggagg cggaaccttc gttcaagggt cttgaacttt ggagccccaa ccattatttt
     4741 ggactccgcc cgtcgagcac ttgccgctct cccgctttct aagaaaggaa acagcagcgc
     4801 aaatgaaaag aacgaccgca cgcagactgc cgctcctctt cgtcgcattt gtcgcgctcc
     4861 tcgcgctcgc gcccgcggcg tccgcacaag cgaggggcga cgcacgggcc gcgctcacaa
     4921 ccttcccgga cgcgcaggcc gtgctctacg tcaacctcga ccgcctcgtc aacgaggcgc
     4981 tgccgcgcgt catgccgccg gccgagtacc agaagatgct ggccgagccg cagaaggtgg
     5041 gcctcgacat ccgcggcctc aggcacgccg tcctcggcgt gcgcttcgcc gaaggctcgc
     5101 agagccccat acccgagttc gtcctgctcc tgcacggcga cttcaacgcc gacacgctcc
     5161 tgatggccgg ccgcgtcggc ataagcgcca tgaagctgga gagccgcgaa gagacctacg
     5221 gcgggaagac cataagcctc ctcaacgtcg agaagctgat gaagggcggc gggggcgagc
     5281 agcagcaggc cgacggccag cagcagcccg agggcggcgg ctcgaagccc aacccgttcc
     5341 cgttccccga gctcgccgtg acggcctacg actcgaacac catcgtcgcg ggcgtccccg
     5401 cctacgtgcg ctcgaccgtt gacgcgatgg gcggcgggca gggccgcctg cgcccgtcca
     5461 tcctcgacct cgccgccaaa gacccgcagg cgctctggag cctcgcggcg gagctgccgc
     5521 ccggcctccc gcagatgttg cagaagacgg gcatgccctc caacgccgag gtcgagcgca
     5581 tcatcggctg gctcaagggc gtaagcttat cgcaggggat ggacgcgctt aacttcacga
     5641 tgcgggccgc cgtcatgacc gacagccccg agcacgccag cgctatcagc ggcctgattc
     5701 agatgggcgc cacggcagcg accgtggccc tcacacagaa catgggcaag aaccccggcc
     5761 cggccgccca acagaaccgc atggccctga acgcgctcaa gaccttcacg aaccgcgtcg
     5821 agggcggcac agtcctgctc ggcatctccg tgccgcagcg cgtgctcgcc gaggtcgtca
     5881 aaaaggagat gacgaagaag ccggcggccg ccacgaaggc gcccagacgc aggcgcggca
     5941 cgcggagacg ttgagacggc gttaatttca aattgcgaat tcagagtcgg aggggcagcc
     6001 ccccgactct gactttgtta tggggacaga gttggggaac gaagataagc gcgcgcgtga
     6061 gattataagg ctcctgaaga gggagtaccc tgatgcgcgt tgcagcctga actacgagac
     6121 gccgcttgag ctgctcgtcg ccactatcct ctcggcgcag tgcacggacg agcgcgtcaa
     6181 catcgtcacc gcagacctct tccgcaagta ccggacctgc gaggactacg cctcggcgcc
     6241 tcccgaggag cttgagcgcg acatacactc caccggcttc taccgcaaca aggcgaaggc
     6301 gattcaggcc acctgccgcg cgctctccga gcgccacggc gggagcgtcc cgcgcacgtt
     6361 gggcgagttg ctacagctcc acggcgtcgc gcgcaagacc gcgaacgtcg tgctcggcaa
     6421 cgcatacggc gcgccctccg gcgtcgtggt tgacacccac gtctcgcgct tggccgcccg
     6481 cctcggcctg tctgcggaga agatgcccga gaagatagag caggacttga acgccgtcgt
     6541 gccgaagaag gactgggtcg ggttcccgca cctgctcatc gcgcacggcc ggaaaatctg
     6601 caaggcgcgc aagcccctct gcggcgagtg cgtgctcgcg gccctctgcc cctcggcctt
     6661 ccgcgtcgcc taagcacggc taacccgcac ggccctctcc ctcgaaccag tccttcgtca
     6721 tgtcgcacca cagtgccagc ccgcgccagg cgccgaagcg cgagtagtat cgtgcgattt
     6781 ttttgtcatc gcaggcgcgc ccgcggttgc gaacccgcgc gaacttgccg cgcacccacg
     6841 agtcgagcgc gagcacgtcg tagcgcccta cgagcttcag gaggttctcg gccgcgtagt
     6901 cgcccacgcc tttcacgcgc ttcatctcgc gcttcaattc tgcggtcggc agctcgctct
     6961 caagccaccc ctccgggtca atctcgcccg acgcgacgcg cacggccatc tccctcaaat
     7021 actccgagcg gtagccggcg cgcaccgtct ccctgtagaa cccgacgggc tcggcggcca
     7081 tcgcctcggg cgtggggaag gcccggcgcc cgcccgccgc gggccggccc aaattttgga
     7141 cgagcgccgt caccatcttc gtcgtcagag accaggagca gttcgtcgtg cagacgctct
     7201 tgacgaggtc ttcgaagacg gtcggcgagc gcaggagccg gcccgcgccg tcgcgcgcta
     7261 tccagccgaa gtccgggtct gaggcgattg ccgagtaaaa ctcatcgagc ccttcgtcca
     7321 ggcgcagcat gtggcgcacg tcgcgcccga cgcgctcgcg ctcgcgggcg ttcagggcgc
     7381 gcgaggcgcg gacgttgagc gcgccgtcgt cgccagtgat cgtgaccgtc acgggcgggc
     7441 gcgcgcccac gtcgagcacg cgcaggagcg tctccctgtt cacccactcg aagggcagaa
     7501 gctcgctcca cccgtggctg gaaatagtcc gaacgaggtc gaagccccgg ggcgtttcga
     7561 ttttgaggtt catgttgaaa ggcacgccgt ccgaaagtct cggcgccgct cgctttgttg
     7621 acgcgggcgg cagatgcgtt atcattcggc cgcgaggttt agttcctaac tgccggcccg
     7681 gagggccaac ttgaacgaga agcgacagct cacagtgctc tgcctcgcca gctacgagaa
     7741 ggggcaggag tttatacgag agtgcaagcg gctgggttgc cggacgctgc tcgtcacgaa
     7801 gcacaagctg gagggcgccg actggccgcg cgaggccatt gacgagacct tctacatgcc
     7861 cgacgagttc tcgctcgaag acttgacgaa ggccgtaagc tacctcgccc gctcgcgcga
     7921 gattgaccgc gtcgtagcgc tcgacgactt cgacgtggag acggccgcct cgctgcgcga
     7981 gcacctgcgc gtccccggca tgggcgacac aaccgcccgc cacttccgcg acaagctcgc
     8041 catgcgcgtc aaggcgcgcg accacggcat actcgtcccc gagttcgtcc acacgctcaa
     8101 ccacgcggca attcacgagt acgtcaaccg cgtccctgcg ccgtgggtgt tgaagccgcg
     8161 ctcggaggct tcggccgtcg gcataaagaa ggtcggctcg gccgacgagc tgtggccgct
     8221 cctcgaagag ctcggcgaca ggcagtcgta ctacctgctc gaacagttca tacccggcga
     8281 catcttccat gttgactcca tagtgtcaga gcgcgaggtt gtcttcacgg ctttgagcaa
     8341 gtacggcctg ccgccgatgg aggtcgcgca cggcggcggc gtcttcctca cccgcacgat
     8401 ctcgcgccac tcggcggacg cgcaggcgct cgacgccctc aaccgcgagc ttctgcacac
     8461 cttaaacctc gtgcgcggcg tcacgcacac cgagttcata aagggccacc acgacggccg
     8521 cttctacttt cttgagactg ccgcgcgcgt cggcggcgcc aacatcgcgg aggtgattga
     8581 agcggcgacg ggcgtcaacc tctggcgcga gtgggcgaag attgagatgg cgggcgagca
     8641 ggggggctac gagccgccgc cgcggcgcga cgactacgcg ggcatcgtca tctcgctcgc
     8701 gcggcaggag tggcctgaca cctccgagtt cgacgacccc gaaatcgtct tccgcctgcg
     8761 caagcgccac cacgtcggcc tcctagtcgc ctcgcacgac cctgggcgcg ttgactggct
     8821 gctccagtcc tactcgcgcc gcctcctccg tgacttcagc gccacgctcc ccgcgcccga
     8881 caagccgacg agctgagagc caaaccccca tggcacgcga cctgacgcga gagttcctgc
     8941 tgttcctgca agtcgagaag gggcttgcgg ccgcctccgt cgaggcatac cgtcacgtgc
     9001 tcgccgggct gaaggcgtgg gcggcggagc gcggccgcga gccgcaggcg ttagacaagg
     9061 cggagcttac gcaatacgtc atgtcgctct ctcgcgcggg gcagtccccg cgcacggtcg
     9121 cgcgggctct cagcgcgata cgcggcttct atcgcttcct tctcgttgac ggccacatcg
     9181 ccaaagaccc ctcggccgag ctcgcgtcgc cgcagttcgg gcagaagctc ccgcgcttcc
     9241 tcacgcagga ggaggtgcag cgcctgatcg aagcgcccga cacctccgac ccggaaggcg
     9301 tgcgcgaccg agccataatc gagctgctct acgcgacggg gctgcgcgtc tccgagttgg
     9361 tctcgctatc ggcggggagc gtgaggacgg acgcaggcgt cctacactgc acggggaagg
     9421 gcagcaagca gcggcgtgtc cccgtcggcc ggtcggccgt cgagtggctt ctaaagtatg
     9481 agcgggcgcg ccgcattctg cttcagggca gggaatcgca gcgcctcttc gtgggccggg
     9541 acggcgcgcc gctcacgcgg cagttcgtct gggcgatgct gaagaagtgt gccgagcgcg
     9601 cgggcgtgag cggcgtctcg ccgcacgtcc tgcgccacag cttcgccacg cacctgcttg
     9661 agcacggcgc cgacacgcgc tc
//
LOCUS       DASPKR010000419         2425 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1870808, whole genome shotgun sequence.
ACCESSION   DASPKR010000419 DASPKR010000000
VERSION     DASPKR010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2425)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1870808"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..371)
                     /locus_tag="VD968_11400"
     CDS             complement(150..371)
                     /locus_tag="VD968_11400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15038.1"
                     /translation="MSFVTKLSWEVLARDCRLYLKEAGSETALTKTGELRLSYGDVLE
                     AGATFVLGADGRAEHVFTGLYSGRRSGGS"
     gene            complement(408..1091)
                     /locus_tag="VD968_11405"
     CDS             complement(408..1091)
                     /locus_tag="VD968_11405"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF001886.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic pyrophosphatase"
                     /protein_id="HYE15039.1"
                     /translation="MAEDEKALHDLLSRMFQAHPWHGVSPGGQAPEVVTAYIEIVPTD
                     AVKYELDKPSGHLTVDRPQRFSSFPPTLYGFIPQTFCGERVAELSRAGGEKIRGDGDP
                     MDICVLTERPAAHASFLVRARPIGGLRMIDGDEADDKIVAVLEKDVSYGHIRDITEAP
                     RGLVERLQHYFLTYKQLPQESPRRVEIADVYGRDAALETIRRSFEDYRALYGAPESRV
                     AELRRLLRG"
     gene            1192..2283
                     /locus_tag="VD968_11410"
     CDS             1192..2283
                     /locus_tag="VD968_11410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15040.1"
                     /translation="MSAATQTTTQELAPAARAKAAALSVRWIIGAREDLVWFIGSVLT
                     SYALLALYVGGLLPLVPMVVGWAVLVDAPHVFATFSRTYFDREERRARRRLLWLSLLF
                     FAVGPLAVLAGFGLVFFFLAALWAYYHLVKQHYGFMVLYKKKNADMERADNALDRAFL
                     LLAFSYPFVAFVARDAEAMERVPPILRGWVGALETVLLVATVAAAALWLGRQAQRWLG
                     RRPLNLPKYLLLAAAVPMHWAVLLTPMPHKPIAIVAMLTVYHNFQYHRLVWFHNRKYT
                     RDETCRERFGAAEFISRRLVHYVALGVLFGVWYQVPRQYVNHAADPEAFMTQMASGLL
                     WGYAFVHYYLDSKIWRVRRDPSVGKALSL"
BASE COUNT          343 a          837 c          796 g          449 t
ORIGIN      
        1 cctgcgggct cgctcgcgcg cttcttccgc gagggcgagg ccgaagagcg cgaggcgcgg
       61 ctcgcatccc ccgccctcgc gcgctggaag ggagaagagc gccgcacgct tgtctgccct
      121 cgctgcggcg ccgaggaaga gttgccggct tagctgccgc cacttctcct cccggagtag
      181 agccctgtga agacgtgctc ggcacggccg tcggcgccta gcacgaacgt cgcgcccgct
      241 tcgagcacgt cgccgtagga gagccgaagc tcgcccgtct tcgtcaaggc cgtctccgac
      301 cctgcctcct tcaagtagag cctgcagtct cgcgcgagca cctcccacga aagctttgtg
      361 acgaaggaca cgcgccgcgg gacgtgcggg aagcggcggg gccgccgtca tccccttaga
      421 agccggcgga gctcggccac gcgcgactcg ggcgcgccgt agagggcgcg gtagtcctcg
      481 aagctgcggc gtatggtttc gagcgcggcg tcgcggccgt aaacgtccgc tatctcgacg
      541 cggcgcgggc tctcctgcgg gagctgcttg taggtgagga agtagtgctg aagtcgctcg
      601 accagcccgc gcggcgcctc cgtgatgtcg cgtatgtggc cgtaagagac atccttttcg
      661 aggacggcca cgatcttgtc gtcggcctcg tcgccgtcaa tcatgcgaag gccgccgatg
      721 gggcgcgcgc gcacaaggaa gctcgcgtgc gccgcgggcc gctcggtgag gacgcatatg
      781 tccatcgggt cgccgtcgcc gcggattttt tcgccgcccg cgcgcgacag ctcggctacg
      841 cgctcgccgc agaaggtctg cggtatgaac ccgtagagcg taggggggaa cgaagagaag
      901 cgctgcgggc ggtcaaccgt caggtggccc gagggcttgt cgagctcgta cttgacggcg
      961 tcggtcggca cgatctctat gtaggccgtg acgacctccg gcgcctgccc gcccggcgag
     1021 acgccgtgcc acgggtgcgc ctggaacatg cgcgacagca gatcgtgcag agccttttcg
     1081 tcttcggcca tccgttatcc ccgccgattc gttgtgttaa aatccggccg ccacgcatta
     1141 tgagcgcctc cggccgcggc tgtccacgcg ccgcccgctt tcagaatctt tatgtcggcc
     1201 gccacacaga cgacaacgca ggagctagcg cccgcagcgc gggcgaaggc tgcggcctta
     1261 agcgtgcgct ggataatcgg cgcgcgcgaa gacctcgtgt ggttcatagg ctccgtgctg
     1321 acgagctacg cgctgctcgc gctctacgtg ggcggtctcc tgccgctcgt gccgatggtc
     1381 gtcgggtggg cggtgctcgt ggacgcgcct cacgtattcg ccacattctc gcgcacctac
     1441 ttcgaccgcg aggagcggcg cgcgcgccgg cgcctgctct ggctctccct gctcttcttc
     1501 gccgtcgggc ctttggccgt gctcgccggc ttcggcctcg tcttcttctt cctcgcggcg
     1561 ctgtgggcct actaccacct cgtcaagcag cactacggct tcatggtgct ctacaagaag
     1621 aagaacgccg acatggagcg agccgacaac gcgctcgacc gcgccttcct gcttttggcc
     1681 ttctcctacc ccttcgtcgc cttcgtcgcg cgcgacgcgg aggcgatgga gcgcgtcccg
     1741 ccgattttgc gcggctgggt cggcgcgctc gaaacggtgc tactcgtcgc cactgtcgcg
     1801 gccgcggctt tatggctcgg gcggcaggct cagcgctggc tcgggcgtcg gccgttgaac
     1861 ctgccgaagt accttctgct cgccgcggcc gtgccgatgc actgggccgt gctcctgacg
     1921 ccgatgccgc acaagcccat cgccatcgtc gcgatgctta cggtctatca caacttccag
     1981 taccaccgcc tcgtctggtt tcacaaccgc aagtacacgc gcgacgagac gtgccgcgag
     2041 cgcttcggcg cggccgagtt cataagcagg cggctcgtgc actacgtcgc gctcggcgtg
     2101 ctcttcggcg tctggtatca ggtgccgcgc cagtacgtga accacgccgc cgacccagag
     2161 gctttcatga cgcagatggc gtccggcctt ctctggggct acgccttcgt ccactactac
     2221 ctcgactcga aaatctggcg cgtgcgccgc gacccttccg tcggcaaggc cctgagcctg
     2281 tagccgcgcg cggacgaaga ggggccgcgg agagtctgtc tgactccctg cggccccgtc
     2341 attttttggt gatgaaggaa gcgcctactt cctgttctct ttgttcgtgt cggccacgga
     2401 cttgagcgcc tggaacgtcg gcggc
//
LOCUS       DASPKR010000420         3155 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1225958, whole genome shotgun sequence.
ACCESSION   DASPKR010000420 DASPKR010000000
VERSION     DASPKR010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3155)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3155
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1225958"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..243
                     /locus_tag="VD968_11415"
     CDS             106..243
                     /locus_tag="VD968_11415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15041.1"
                     /translation="MTKTGELRLSYGDALEAGATFVPGADGRAEHVFTGLYSGRRSGG
                     S"
     gene            complement(240..479)
                     /locus_tag="VD968_11420"
     CDS             complement(240..479)
                     /locus_tag="VD968_11420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15042.1"
                     /translation="MRETEHFVNDGYGWACRRCHGVSAEAPDAPAGSLARFFREGEAE
                     EREARLASPALARWKGEERRTLVCPRCGAEDELPA"
     gene            complement(522..1685)
                     /locus_tag="VD968_11425"
     CDS             complement(522..1685)
                     /locus_tag="VD968_11425"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HYE15043.1"
                     /translation="MYRLSARQILSIALLSALFSAVTVACFSRWGGHIQQPTAAFNEN
                     GVEAGAAGVADPSTATDEQNNIEVFRSISPGVVSISTTTRPRGFFDAGGRGSGSGSVI
                     DEQGHILTNFHVIEQADTVTVSFGGEKAYPARIIGRDPDTDLAVIKVDNAPRETLKVV
                     PLGDSDRLVVGQKVLAIGNPFGLDRTLTTGVISGLQRPIEARNGRVIEGAIQTDASIN
                     PGNSGGPLLDSQGRMIGINSQILSPSGVGSVGVGFAVPVNIAKRIVPQLIREGRVVRP
                     KLGVYPRAVSDLRGIRLPVEQGLLILQLEPGGSAAAAGLRGLSETDSGDLVIGDIITA
                     IDGEKIADQNDLYRVLDKHQFNDVVQVEVYRDGRRQVIPVRLLPEEARRPVRR"
     gene            complement(1876..2232)
                     /locus_tag="VD968_11430"
     CDS             complement(1876..2232)
                     /locus_tag="VD968_11430"
                     /inference="COORDINATES: protein motif:HMM:NF039183.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5658 family protein"
                     /protein_id="HYE15044.1"
                     /translation="MSAFSKSLLLFALNWLDAQLTIVWVRAGLATEGNGLMAYLLDAG
                     NAPFLLTKLAVGGLVAYTLYRFSYVTLARRGLHFALGLYLTLMLVHTATGLTAFGIHP
                     PDSFVAAVSSLLALIT"
     gene            complement(2406..>3155)
                     /locus_tag="VD968_11435"
     CDS             complement(2406..>3155)
                     /locus_tag="VD968_11435"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HYE15045.1"
                     /translation="LDRLRWVKTPYEIERLRRSGQIGAEGMKAGIRGTRPGMFEYELE
                     AAARFVQTKMGARGDAFTPIVASGPNTVTWHYQSNDRQMQAGDFVLMDYGADFDYYTS
                     DITRTWPVSGKFTPEQEKMYLCVLEARDRIISMMKPGVTIKQMQDAAEEVYTRHGFRQ
                     QFLELGRYVGHPVGLSVHDVGGHGPEVTLRAGVVFNVEPLLEFRARKIHMRLEDSVLV
                     TEAGAENLTAAAPADLQSVYALIREKGLALN"
BASE COUNT          500 a         1000 c         1114 g          541 t
ORIGIN      
        1 cttcccgcac gtcccgcggc gcgtcccctt cgtcacaaag ctttcgtggg gggtgctcgc
       61 gcgagacggc aggctctact tgaaggaggc ggggtcggag acggcttgac gaagacgggt
      121 gagcttcggc tctcctacgg cgacgcgctc gaagcgggcg cgacgttcgt gccaggcgcc
      181 gacggccgcg ccgagcacgt cttcacgggg ctctactccg ggaggagaag cggcggcagc
      241 taagccggca actcgtcctc ggcgccgcag cgagggcaga cgagcgtgcg gcgctcttcg
      301 cccttccagc gcgcgagggc gggggacgcg agccgcgcct cgcgctcttc ggcctcgccc
      361 tcgcggaaga agcgcgcgag cgagcccgca ggcgcgtcgg gcgcctcagc gctgacgccg
      421 tggcagcgcc tgcacgccca cccgtagccg tcgttgacga agtgctcggt ctcgcgcatg
      481 gaaaaatcgt cgtcgtccgc cgttttctcc ccgacgcttt tttagcggcg caccgggcgg
      541 cgggcctctt cgggcaacag ccggacgggt atgacctgcc ggcggccgtc gcgatagacc
      601 tcgacctgaa ctacgtcgtt gaactgatgt ttgtcgagca cgcggtagag gtcgttctgg
      661 tcggctatct tctcgccgtc aatcgccgtg atgatgtcgc ctatgacgag gtcgcccgag
      721 tcagtctccg atagcccacg aaggcccgcc gcggcggccg agccgcccgg ctcaagttgg
      781 agtatcaaga gcccctgctc gaccggcagc cgtatgccgc gcaggtcgga gacggcgcgc
      841 ggatagacgc cgagcttggg ccggacgacg cgcccctcgc gtatgagttg cggcacgatg
      901 cgcttggcga tgttgacggg gacggcgaag cctacgccca cggagcccac gcccgagggc
      961 gagagtatct gcgagttgat gcctatcatg cgcccctgcg agtcgaggag cggcccgccg
     1021 gagttgccgg ggttgatgga ggcatcggtc tgaatcgccc cctctatgac gcggccgttg
     1081 cgcgcctcga taggccgctg gaggccggag atgacgcccg tcgtgagcgt gcggtcgagg
     1141 ccgaacgggt tgccgattgc cagaaccttc tgcccgacta cgagccggtc ggagtcgcct
     1201 agcggcacca ccttgagcgt ctcgcgcggg gcgttgtcaa ccttaatcac cgcgaggtca
     1261 gtgtcggggt cgcggccgat tatgcgcgcg gggtacgcct tctcgccgcc gaagctgacg
     1321 gtgacggtgt cggcctgctc gatgacgtgg aagttcgtga gtatgtggcc ctgctcgtct
     1381 atgacggagc cggagccgga gcctcggccg ccggcgtcga agaatccgcg cggccgcgtc
     1441 gtcgtgctga tggagacgac gcccggcgag atagagcgga agacctcgat gttgttctgc
     1501 tcgtcggtcg cagtcgaggg gtctgcaacg ccggctgcgc cggcctccac accgttctcg
     1561 ttgaaggcgg cagtcggctg ctgtatgtgg ccgccccagc ggctgaagca ggcgaccgtc
     1621 acggccgaga agagtgcgga caggagcgct atgctaagta tctggcgcgc ggatagtctg
     1681 tacatggctt tgctctcttt gtgctgcatg actgccgttg gattaagatg ccggccgcgc
     1741 gcggcggcgt tgcgcattct actacgaagc ggcgcgggtc ggggttcgtc gggcggccgg
     1801 gcagacctcg gcgcacggaa tcacttccga ggtgattccg cccgcgcccg cggaaagttc
     1861 caagcggcgg cgttcttaag ttatcagggc gagcaggctc gatacggccg cgacgaagga
     1921 gtcgggcggg tgtatgccga aggccgtaag gcccgtggcc gtgtggacga gcatgagcgt
     1981 caggtacagg ccgagcgcga agtgtaggcc gcggcgtgcg agcgtgacgt aagagaagcg
     2041 gtagagcgtg taggcgacca ggccgccgac ggcgagcttc gtgaggagga agggggcgtt
     2101 gccggcgtcg agcaggtagg ccatcagccc gttgccttcc gtggcgagcc ccgcgcgcac
     2161 ccagacgata gttagctgcg cgtccagcca gtttagggcg aaaagcagca ggctcttcga
     2221 gaaggcgctc atcgaggttt cggctccctt cgtggctaac tcggtttaac cttccacccc
     2281 tgaaacgacc gaacccccag tccgcggact gggggttcgt gtcgcaccga cgggggaagc
     2341 agctaaccag cttaacgtct gtcagaaagt gctaatggcc ctcgggtttc agtaaacttc
     2401 cccgctcagt tcaaggcgag gcccttctcg cgtatgaggg catagacgga ctggaggtcg
     2461 gccggcgccg ccgccgtcaa attctcggcg cccgcctccg tgacgagcac ggaatcttcc
     2521 aggcgcatgt gaatcttccg ggcgcggaac tccaagagcg gctcgacgtt gaagacgacc
     2581 ccggcgcgca gagtcacctc ggggccgtgg ccgcccacgt cgtggacgga gagcccgacg
     2641 gggtggccga cgtagcggcc cagctcaagg aactgctggc ggaagccgtg gcgagtgtaa
     2701 acttcctcgg cagcgtcctg catctgcttg atcgtcacgc ccggcttcat catcgagatt
     2761 atgcggtcgc gggcttcgag cacgcagagg tacattttct cctgctcggg cgtgaacttg
     2821 ccggagacgg gccacgtgcg cgtgatgtcg gaggtgtagt agtcgaagtc ggcgccgtag
     2881 tccatgagga cgaaatcgcc ggcctgcatc tgccggtcgt tgctctggta gtgccacgtc
     2941 accgtattcg gccccgacgc gacgatgggc gtgaaggcgt cgccgcgcgc gcccatcttc
     3001 gtctgcacga agcgcgcggc cgcctccaac tcgtactcga acatgccggg gcgggtgccg
     3061 cggatgccgg ccttcatccc ctcggcgccg atctggccgc tgcggcgcag ccgctcgatc
     3121 tcgtacggcg tcttgaccca ccgcaggcgg tcgag
//
LOCUS       DASPKR010000421         3936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1353602, whole genome shotgun sequence.
ACCESSION   DASPKR010000421 DASPKR010000000
VERSION     DASPKR010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3936)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3936
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1353602"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..788)
                     /locus_tag="VD968_11440"
     CDS             complement(<1..788)
                     /locus_tag="VD968_11440"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HYE15046.1"
                     /translation="MSSSLKHFYEFGPFMLDAGERLLYRGGEPVRLTPKEFDTLLALV
                     RSGGRVVPKDELLKEIWPDTFVEEATLAQNVFTLRKALARAEGGGESGEQTQYVETVP
                     RRGYRFAAKVRERREEVSPEAEPEQETAPALAVAADGGGRASLEKAAAAPLEPAVVPA
                     PAGRNGSGAIHVTQPADGHGPEAETAQAAALSSTQVTVPAAPSPHVTTPPGLSSAEGA
                     GRPVRAAVLIALAVLLAAGGLTFLIYRFVLPGHVEPRRQAGFQT"
     gene            1030..1500
                     /locus_tag="VD968_11445"
     CDS             1030..1500
                     /locus_tag="VD968_11445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15047.1"
                     /translation="MKKQITRTFAIVAALIALAGSTVTYAQATRRVVVDIPFEFTAGA
                     ERMPAGRYTVSKMVRDSESALVLRSEDGSASVVVLTNAAEAGRGRAALTFRLYAGDQY
                     FLSRVWIPGTAAVRSLPQSAREKRLRRELRAKSEGRPSDGADGAKTITVTGELN"
     gene            complement(1739..3364)
                     /locus_tag="VD968_11450"
     CDS             complement(1739..3364)
                     /locus_tag="VD968_11450"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE15048.1"
                     /translation="MPEVTSDTPPERPAERLLVVDDEESITLTVSEVLRLEGYGVDVA
                     SSGREAVRRLSEGGYDLVLTDLHMEDGDGMSVLEEVKRTSPLTITIVLTGFAALETAI
                     GALRHGAYDYLTKPCMIEELKHTVRRGLEHRRLMLAEREARAGLEQLNRELERRVEER
                     TAELRRVNEELREANRAKDVFLATLSHELRTPLTPVLGWVNLLRSGGRNADAALVSQG
                     LDAIERNARLQARLVDDLLDISRIVSGKLRIDWELVDVCAVVESAVETARAEAARRRV
                     EVSAEARDCPLPVRGTAVRLQQIVSNLLSNAVKFTPDGGRVSLRVWREGGEARLVVED
                     TGVWIAPEFLPHVFDRFRQADGSTTRQYGGLGLGLAIVRALTELHGGWVRAESEGLGR
                     GSRFTLAIPCALTEAKAEAEAEEEEGGRARPPVLVVDDSDETLELLQMLFTRKGYDVV
                     CAASAAEAVERARETHPGVIISDISMPGEDGYQMLAELRCLPGLERVPAIALTGHAMD
                     EDRRRALEAGFAVHVAKPVDPDELVRLVRRLTA"
     gene            complement(3433..>3936)
                     /locus_tag="VD968_11455"
     CDS             complement(3433..>3936)
                     /locus_tag="VD968_11455"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HYE15049.1"
                     /translation="SIESSIDALRQGAYDYLVKPCVVEDLKRTVRRAVEDRDQRARIT
                     ELSSPVVEIWDGVLLVPLVGTLDDQRAAQMSAALLAAVRSECAQVVLVDITGCRVVDT
                     FTAAHLINTVRSVRLLGAHTVITGVSAHVAADLVKLGARLEEITTRRKLADGLRLALE
                     LVKEARG"
BASE COUNT          598 a         1362 c         1363 g          613 t
ORIGIN      
        1 atcgtctgga agccggcctg acgccgcggc tcgacgtggc cgggcagcac gaacctgtag
       61 atgaggaagg tcagcccgcc cgccgccaga agcacggcga gcgcgatgag cacggccgcg
      121 cgcacgggcc gccccgcgcc ctcggcgctt gagagtcccg gcggcgttgt gacgtgcggc
      181 gaaggggcgg caggcaccgt cacctgtgtt gacgaaaggg ccgccgcctg agccgtctcc
      241 gcctccgggc cgtggccgtc ggccggctgc gtgacgtgta tggcgcccga accgttccgg
      301 cccgccgggg ccggcacgac cgcaggctct aagggcgctg ccgccgcctt ctccaaactc
      361 gcccgcccgc cgccgtcggc cgcgacggct agcgcgggcg ccgtctcctg ctcgggctcg
      421 gcctccggcg agacctcctc acgcctttcg cgaaccttcg cggcgaagcg gtagccgcgc
      481 cgcggcaccg tctcgacgta ctgcgtctgc tcgccgctct cgccgccgcc ctcggcgcgc
      541 gctagggcct tccgcagcgt gaagacgttc tgggcgaggg tcgcctcctc gacgaaagta
      601 tccggccaga tttctttcaa taattcgtcc ttcggcacca cccggccgcc gcttcggacg
      661 agcgcgagca gcgtgtcgaa ctccttcggc gtgaggcgga cgggctcgcc gccgcggtaa
      721 aggaggcgct ctccggcgtc cagcatgaag gggccgaact cgtagaagtg tttgagactg
      781 ctagacatcg ccgcttttaa aagccctttg ataactcttt gaaaactatt tcagcgcgct
      841 ttgggcggtt tttgaaaatc cccggcccgg ccccgcacgt tcgagcacac agcaaggcgg
      901 gacgacgctc tttatacgaa ccgcagacgc ccccgcgttc ggacaagttc cggggaagcg
      961 ccgaagcgga gggaaacgaa acaagccgcg cgccagggcg cgccacaggg gagactaaag
     1021 ggaggagata tgaaaaagca aattaccagg acgtttgcca tcgtcgccgc gctcatcgcg
     1081 ctggccggct ccaccgtcac ctacgcgcag gcgacgcgcc gcgtcgtcgt tgacatcccg
     1141 ttcgagttca cggccggggc cgagcgcatg ccggccgggc gttacaccgt ctccaagatg
     1201 gtgcgcgact cggagagcgc gctcgtctta aggagcgagg acgggagcgc ttcggtcgtg
     1261 gtgctgacga acgcggccga ggcgggccgc ggccgcgccg cgctcacctt ccgactctac
     1321 gcgggcgacc agtattttct gtcgcgcgtg tggattccgg ggacggccgc cgtgcgctcg
     1381 ctcccgcagt cggcccgcga gaagaggctg cggcgcgagc tgcgcgccaa gtccgagggc
     1441 cggccctcgg acggcgccga cggcgcgaag acgatcacgg tgaccggcga gctgaattaa
     1501 gtcgcgtaac ggtgtgccgc gccttctgag tgggcctcgg ggcgcgtgca aaggggcggc
     1561 ggccgggcca aggggggccg ggccgccgcc cctgcgttac cacttcactt cgaggtgaag
     1621 tagccctgga tggcgatgta gtattcgctc cccttcgggg cgagcccctt gtaattgggg
     1681 ggcgcgaagg tggactcccc gtcgccgccg agggtcgcgc cgggcggaag ctgtaaggtt
     1741 aagccgtgag acggcgcacg agccgcacca gctcgtccgg gtcaacgggc ttggcgacgt
     1801 ggacggcgaa gccggcttcg agggcgcggc ggcggtcttc gtccatcgca tggccggtga
     1861 gcgctatcgc ggggacgcgc tcgaggccgg gcaggcagcg gagctcggcg agcatctggt
     1921 agccgtcctc gcccggcatg cttatgtcgg agatgattac gccggggtgc gtctcgcggg
     1981 cgcgctcgac ggcctcggcg gccgacgccg cgcagaccac gtcgtagccc ttgcgcgtga
     2041 agagcatctg caaaagctcc agcgtctcgt ccgagtcgtc aacgacgagc acgggcgggc
     2101 gggcgcgccc cccctcttcc tcctcggcct ccgcctcggc cttcgcctcc gtcagagcgc
     2161 acggtatcgc cagcgtgaag cgcgagccgc gcccgagccc ctcggactct gcgcgcaccc
     2221 agccgccgtg cagctccgtg agcgcccgca caatagcgag ccccagcccg agcccgccgt
     2281 actgccgcgt cgtcgagccg tcggcctgcc ggaatcggtc gaacacgtgc ggcaaaaact
     2341 cgggcgcaat ccacacgccc gtgtcctcga cgaccaggcg cgcctcgccg ccctcgcgcc
     2401 acacgcgcag gctcacgcgc ccgccgtcgg gcgtgaactt caccgcgttc gacaggagat
     2461 tcgagacaat ctgttgcagc cgcacggcgg tgccgcgcac cggcagcggg cagtcgcgcg
     2521 cctcggccga gacctcgact cggcgccgcg ccgcctcggc gcgggcagtc tcgaccgccg
     2581 actcgaccac ggcgcacacg tcaaccagct cccagtctat gcggagcttg cccgatacta
     2641 tgcgcgagat gtcgaggagg tcgtcaacga ggcgtgcctg aaggcgggcg ttgcgctcga
     2701 tggcgtcgag cccctgcgag actagcgcgg cgtcggcgtt gcgcccgccc gagcgcagga
     2761 ggtttaccca cccgaggacg ggcgtgagcg gcgtgcggag ctcgtgcgag agcgtggcga
     2821 ggaaaacgtc cttggcgcgg ttggcctcgc gcagctcttc gttgacgcgg cggagttcgg
     2881 ccgtgcgctc ctcgacgcgc ctctccaatt cgcggttgag ttgctcgagc ccggcgcgcg
     2941 cctcgcgctc ggcgagcatc agccgcctgt gctcgaggcc gcgccggacg gtgtgcttca
     3001 gctcctcgat catgcacggc tttgtgaggt agtcgtaggc gccgtggcga agggcgccga
     3061 tggcagtctc cagcgcggcg aagcccgtca gcacgatggt gattgtcagc ggcgaggtgc
     3121 gcttcacctc ttcgaggacg gacatgccgt cgccgtcctc catgtgcagg tctgtgagga
     3181 cgaggtcgta gccgccttcg gagagccttc gcaccgcctc gcgcccgctc gaagccacgt
     3241 ccaccccgta gccttcgagg cgcagcacct cgctcaccgt cagcgtgatg ctctcctcgt
     3301 cgtcaacgac gaggagccgc tcggccggcc gctccggggg agtgtctgaa gtcacttcgg
     3361 gcataggagc aggggatagg gactagggac tagaggctag ctaaaaacga gtcttctact
     3421 accccttagt ctctagcccc tagcctcttt cactaattct aaggcgagcc gcagcccgtc
     3481 cgccagcttg cggcgcgtcg ttatctcttc gagccgggcg ccgagcttta cgaggtcggc
     3541 ggcgacgtgg gcgctcacgc ccgttatcac cgtgtgcgcc ccgagcaggc gcactgagcg
     3601 gacggtgttg atgaggtgcg cggccgtgaa cgtgtcaacg acgcggcagc ccgttatgtc
     3661 aacgagcacg acctgcgcgc actcggagcg cacggccgcc agaagcgccg ccgacatctg
     3721 cgcggcccgc tggtcgtcga gcgtgccgac gagggggacg aggagcacgc cgtcccaaat
     3781 ctctacgacg gggctggaaa gctccgttat gcgggcgcgc tggtcgcggt cttctaccgc
     3841 gcgccgcacc gtccgcttga ggtcttcgac gacgcagggc ttcacgaggt agtcgtatgc
     3901 gccctggcgc agcgcgtcta tggatgactc gatgga
//
LOCUS       DASPKR010000422         2439 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1353772, whole genome shotgun sequence.
ACCESSION   DASPKR010000422 DASPKR010000000
VERSION     DASPKR010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1353772"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            344..844
                     /locus_tag="VD968_11460"
     CDS             344..844
                     /locus_tag="VD968_11460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15050.1"
                     /translation="MAKSGHKGISRIDSPAKKTHGWYVRVRLNKQAKAKFIPDRLHGG
                     PEGSLKAAVEWRDEFERQLGRPRTDHAVVGSNPRNQGGVAGVRRAVKKYKGKDGTIYE
                     NAVYEVTWNAGRERKGRTSVSIKKYGELRAFRMACAIRREKERIMYGKPVEGKWASAL
                     SKVCAA"
     gene            883..1929
                     /locus_tag="VD968_11465"
     CDS             883..1929
                     /locus_tag="VD968_11465"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYE15051.1"
                     /translation="MRVLLRCLSALALCSPVFAAGGGAPARQSRGRAAASESKLTGVY
                     RIDIARSDKLYSVVAGASSTVPFGEQQRFFIDLAVRLTPPDLLAIERRGRLITVGSSR
                     APRVTFEADGVARTERAGDGHAVRRRASLEGDKLIFTAAGRAEDDFTVIFAPVDGGRA
                     LRVTRRLSAEQLSEPVVIQTFYTKISHEARWDLYGEPPPAEPGPVAEATGAAAGASPR
                     TAARGEEAGELRSTLEEWVAATNARDIDAQMNFYSPTLTAFYLARNVSRSFVRAEKVR
                     AFSGTERVDVRAEAPEILFREGGSTAVMRFRKKYDIAGRGRARRGEVVQELRWRRTPR
                     GWKIFSERDVRVIR"
     gene            2030..>2439
                     /locus_tag="VD968_11470"
     CDS             2030..>2439
                     /locus_tag="VD968_11470"
                     /inference="COORDINATES: protein motif:HMM:NF014714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15052.1"
                     /translation="MSESLRLMVVAGEESGDAHAAALVRALRERAPGAQFDFFGSTGA
                     AMRAEGVESVVREDDLAITGLVEIGRALPRFMSAYRALKRAAVERRPDAVILVDWPDF
                     NLPLARALRRRGLRVIYYISPQLWAWRSYRARQVR"
BASE COUNT          412 a          811 c          839 g          377 t
ORIGIN      
        1 agtgcggcgg aggcgagcga gcaggcgagc agcgccgcga ggcggagggc ttttctgttt
       61 gtcttcatgt ttgtcggcga aacttcgcgc cgaagggggc gcggccgctc cgggcaaggt
      121 taaaagcgcg cccgagttta acacccgccc ccgccccgcg tcacccgcgc cgccgaaaat
      181 ctggctacgc ctaacaaaag catgcacccg gcgcgcttag aacggcagag ggacggcgca
      241 gcgtcgcgcg gctctttgac aaaccctgcg ccgtgcatgt aagtttcaac agaagcagtc
      301 attgcgaaaa ctttcaagca gaggagactc tcgataagag tttatggcaa agtccggtca
      361 caagggcata agcagaatag atagccccgc gaagaagacg cacggctggt acgtgcgggt
      421 caggctaaac aagcaggcta aagctaagtt catccccgac aggctgcacg gcggccccga
      481 gggctcgctc aaggcggccg tggagtggcg cgacgagttc gagcggcagc taggccgccc
      541 gcgcacggat cacgccgtcg tgggcagcaa cccgcgcaac cagggcgggg ttgcgggcgt
      601 gcggcgtgcg gttaagaagt acaaaggcaa ggacggcact atctacgaga acgcggttta
      661 cgaagtcacc tggaacgccg ggcgcgagcg caaaggcagg acttccgtct cgataaagaa
      721 gtacggcgag ctgagggcgt tccgcatggc ctgcgcgata cggcgcgaga aggagcgcat
      781 catgtacggc aagcccgtcg agggaaagtg ggcatcggcc ctgagcaagg tctgcgcggc
      841 ctgaagggct cgggcgggcg gccgagcccc ggggtggcct tgatgagagt cttactgcgc
      901 tgcctgtcgg cgttggcgct ctgctcgccg gtcttcgctg ccggcggcgg ggcgcccgcg
      961 cggcagtctc ggggccgggc cgccgcctcg gagtcgaagc tcacaggcgt ctatcgcata
     1021 gacatcgcgc gcagcgacaa gctctactcg gtcgtcgccg gcgcttcgag caccgtcccc
     1081 ttcggcgagc agcagcgctt cttcatagac cttgcggtgc ggctgacgcc gcccgacctt
     1141 ctggcgattg agaggcgcgg ccgcctaatc acggtcggct cctcccgcgc gccgcgcgtc
     1201 acctttgagg ccgacggcgt cgcgcgcacc gagcgcgcgg gcgacggcca cgcggtgcgc
     1261 cgccgcgcct cgctcgaagg cgacaagctc atcttcaccg cggcgggcag ggccgaggac
     1321 gacttcaccg tcatcttcgc gcccgtggac ggcggccgcg cccttcgcgt cacgcgccgc
     1381 ctctcggccg agcaattgag cgagcccgtc gtcatacaga ccttctacac gaaaatctca
     1441 cacgaggcgc ggtgggactt gtacggcgag cctccgcccg cagagcccgg ccccgtagcg
     1501 gaagcaacag gcgcggcggc cggtgcctcg ccgcggacgg ccgcgcgcgg cgaggaggcg
     1561 ggcgagctgc gctccacgct cgaagagtgg gtggcggcga cgaacgcgcg cgacatagac
     1621 gcgcagatga acttctactc gccgacgctc acggccttct acctcgcgcg caacgtctcg
     1681 cgctcgttcg tgcgcgccga gaaggtgcga gcgttctccg gcaccgagcg cgttgacgtg
     1741 cgcgccgagg cgcccgaaat cctcttccgc gaaggcggct ccacggccgt catgcgcttc
     1801 cgcaagaagt acgacatcgc gggccgcggc cgcgcccgcc gcggcgaggt cgtccaggag
     1861 cttcgctggc gccgcacccc ccgcggctgg aaaatcttca gcgagcgcga cgtgcgagtc
     1921 atcagatgag taggcagtag gctcggcatt tgaagttgac acttaaacga atgccctcac
     1981 gcggcgatag tttttctact gactactgcc tactgcctcc ttctttcata tgtccgagag
     2041 tctgcggctg atggtcgttg cgggcgagga gtctggcgac gctcacgcgg cggcgctggt
     2101 gcgcgctctg cgcgagcgag cccccggcgc tcagttcgac ttcttcggct cgacgggcgc
     2161 ggcgatgcgc gccgagggcg tcgagtcggt cgtgcgcgag gacgacctgg cgataacggg
     2221 gctcgttgaa ataggccgcg cgctgccacg gttcatgtcg gcttaccggg cgctcaagcg
     2281 cgccgcggtc gagcgccgcc ccgacgcagt aattctcgtt gactggcccg acttcaacct
     2341 gccgctcgct cgcgccctgc gccgccgggg cctgcgcgtc atctactaca taagcccgca
     2401 gctctgggcc tggcgctcgt accgcgcgcg gcaggttcg
//
LOCUS       DASPKR010000423         3391 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_60823, whole genome shotgun sequence.
ACCESSION   DASPKR010000423 DASPKR010000000
VERSION     DASPKR010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3391)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3391
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60823"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..715
                     /locus_tag="VD968_11475"
     CDS             <1..715
                     /locus_tag="VD968_11475"
                     /inference="COORDINATES: protein motif:HMM:NF019229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HYE15053.1"
                     /translation="DYDNDGLVDVFVTALSNETYPLFRNAGEMAFTYATGSSGVGLIT
                     LPYSGWGTRFADFDNDGLRDILVAQGHVLDTIEKTAGHLTYRQSPLLMRNTGRGFVNV
                     SLSAGLSAPLAARGAAFGDLDNDGDTDVVLAQTDGPAVVLRNNGTKNHWLGLALAGAG
                     ANRHALGARVTVVSASGARQIFDVTAAGSYLSSNDPRIIVGLGDAAAVRSVEVRWPGG
                     RAQTVAAPQVDRYLTVSEK"
     gene            715..2535
                     /locus_tag="VD968_11480"
     CDS             715..2535
                     /locus_tag="VD968_11480"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HYE15054.1"
                     /translation="MRRTLFPFLQSAALLFALALPSSARQQQQPGMGVSTGTGLVSST
                     RRTAGITDPKAPRVFEDVTAASGLASFKHVSGSVAKDYIVETTSGGVAVFDYDGDGLP
                     DIYLLNGSTIAAMQGKEKHPRAALFRNLGGLKFQDVTERAGVANERWGMGVAVADYDN
                     DGDADMYVGNFGVSRLYRNNGDGTFTDVAEKLGVARKGWSTGASFGDYDADGRLDLFV
                     PGYVELDLGNLPPSPADAGKPGQVAANFCQFRGVPVMCGPRGLKGEADTLYRQRADGT
                     FEDVSSRTGVNDEPRYYGFSSAWVNVNDDALPDLIVVNDSTPKQLYMNLGAGKFEEVG
                     YPSGVALNENGREQAGMGLGVGDYDNDGLVDFYITNFSDDSNTLYHNDGDANFTDVTF
                     QAGHGEPTIPFLGWGTSFMDYDNDGWKDVIVANGHVYPAVDKQQWGTSYAQQLLLFRN
                     LGAGGKFERVAAAPGSGLAEAWPARGLAVGDLDADGRLDVVLNNMGEAPTVLRNVTAT
                     GGNRWLRVRLVGDPSKKAPRDATGAVVFVTTGKLRQRADAVSGAGYSSQNDPALFFGL
                     GPSDRVDRLEVRWPGGQTETFQVAGLDRTLTLTQGKGTKQ"
     gene            complement(2659..>3391)
                     /locus_tag="VD968_11485"
     CDS             complement(2659..>3391)
                     /locus_tag="VD968_11485"
                     /inference="COORDINATES: protein motif:HMM:NF017393.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc metalloprotease"
                     /protein_id="HYE15055.1"
                     /translation="EFNSTRSPGQIRKSGSVTVPVFFHVINKGRGVSNGDITSRMIND
                     QIAVLNAAFAGATGEGAAATPFRFALVGVDRTTNLEWFNAGYGSRAEREMKTALRVGG
                     PDVLNFYTNNAGGTLLGWATFPFSYESDPKMDGVVCLYSSLPGGTEVPYNEGDTGTHE
                     VGHWLGLYHTFQDACSVYNDFVADTPAERAPAFRCPTGLDTCPATGKDPIENFMDYTD
                     DPCMYRFSAGQSARMESAALKYRGL"
BASE COUNT          554 a         1194 c         1104 g          539 t
ORIGIN      
        1 cgactacgac aacgacggcc tcgttgacgt tttcgtaacg gcgctctcga acgagaccta
       61 cccgctcttc cgcaacgcgg gcgagatggc cttcacctac gccacaggct cgtcgggcgt
      121 agggctcatc acgctcccct actccggctg ggggacgcgc ttcgccgatt tcgacaacga
      181 cggcctgcgc gacatactcg tcgcgcaggg ccacgtgctc gacacgatag agaagacggc
      241 cggccacctg acctacaggc agtcaccgct gctgatgcgc aacaccggcc gcggctttgt
      301 aaacgtctct ctgtcggccg gcctctccgc gccgctcgcc gcgcgcggcg ccgccttcgg
      361 cgacttagat aacgacggcg acacggacgt cgtgctcgcg cagacggacg gcccggcggt
      421 cgtgctgcgt aacaacggga cgaagaacca ctggctcggc ctcgcgctcg cgggggcggg
      481 cgcaaaccgc cacgccctgg gcgcgcgcgt aacggtcgtg agcgcttcgg gcgccaggca
      541 gatttttgac gtgaccgcgg ccggcagcta tctttcgtcg aacgacccgc ggatcattgt
      601 cggcttaggc gacgcggcgg ccgtgcgctc cgtcgaggtc cgctggcccg gcggccgcgc
      661 gcagaccgtc gccgccccgc aggttgacag gtacctgacc gtaagcgaga agtgatgcga
      721 agaactcttt tccctttcct tcagtcggcc gcgcttttat tcgctctggc gctcccgtcc
      781 tctgcgcggc agcaacagca gccgggcatg ggcgtctcga ccggcacggg gctcgtctcc
      841 tcgacgcgcc gcacggccgg cataaccgac ccgaaggcgc cgcgcgtctt cgaggacgtg
      901 actgccgctt cggggctcgc gtcgttcaag cacgtctccg gctccgtcgc gaaggattac
      961 atcgtcgaga cgacttcggg cggcgtcgcc gtcttcgact acgacggcga cggcctcccc
     1021 gacatctacc tcctcaacgg ctcgaccatc gccgcgatgc agggcaagga gaagcacccc
     1081 cgcgccgcac tcttccggaa cctcggcggg ctcaagttcc aggacgtgac ggagcgggcg
     1141 ggcgtagcga acgagcgctg gggcatgggc gtcgccgtag ccgactacga caacgacggc
     1201 gacgctgata tgtacgtcgg caacttcggc gtctcgcgcc tctaccgaaa caacggcgac
     1261 ggcaccttca cagacgttgc cgagaagctc ggcgtggcgc gcaagggctg gagcacgggc
     1321 gcgagcttcg gcgactacga cgcggacggc cgcctagacc tcttcgtccc cggctacgtc
     1381 gagctggact tgggcaacct gccgcccagc cctgccgacg cggggaagcc cggccaggtg
     1441 gccgcgaact tctgccagtt ccgcggcgtc cccgtcatgt gcggcccgcg cggcctgaag
     1501 ggcgaggccg acacgctcta ccgccagcgg gccgacggca ccttcgagga cgtgtcctcg
     1561 cgcacgggcg tcaacgacga gccgcgctac tacggcttct cctccgcgtg ggtgaacgtg
     1621 aacgacgatg cgctgcccga cctcatcgtc gtcaacgact ccaccccgaa gcagctctac
     1681 atgaacctcg gcgcggggaa gttcgaggag gtcggctacc cctcgggcgt ggccttaaac
     1741 gagaacgggc gcgagcaggc aggcatgggg ctcggcgtcg gcgactacga caacgacggc
     1801 ctcgttgact tctacataac aaacttctcc gacgactcga acacgctcta ccataacgac
     1861 ggcgacgcca acttcacgga cgtcactttc caggcgggcc acggcgagcc tactatcccc
     1921 ttcctcggct gggggacgag cttcatggac tacgacaacg acggctggaa ggacgttata
     1981 gtcgcgaacg gccacgtcta tccggccgtt gacaagcagc agtgggggac ttcctacgcg
     2041 cagcaactcc tgctcttccg aaacctcggc gcgggcggca agttcgagcg cgtcgcggcc
     2101 gcgcccggct ctggcctcgc ggaagcatgg cccgcgcgcg gcctcgccgt cggtgacctc
     2161 gacgccgacg gccgcttaga cgtggttctc aacaacatgg gcgaggcgcc caccgtgctg
     2221 cgcaacgtta ccgcgacggg cggcaaccgc tggctgcgcg tgcgcctcgt cggcgacccc
     2281 tcgaagaaag cgccgcgcga cgccaccggc gccgtcgtct tcgtcacgac cggcaagctc
     2341 cgccagcgcg ccgacgccgt ttcgggcgcc ggctactcct cgcagaacga cccggccctc
     2401 ttcttcggcc tcggcccgtc cgacagggtt gaccgcctcg aagtccgctg gcccggcggc
     2461 cagaccgaga ccttccaggt cgccggcctc gaccgcacgc tcacgctcac gcaggggaaa
     2521 ggcacgaaac agtaggcgga agcagaaaag cagaaggcag tcgggctcca gccatgcccg
     2581 actgccttct gcttttctgg aaaagggcga gggcttctcc ggcgaaggcc cccgcccttt
     2641 ttccctttta gcccgactct acaggccgcg gtacttcagc gccgcggact ccatgcgcgc
     2701 ggactggcca gccgagaagc ggtacatgca ggggtcgtcc gtatagtcca tgaagttctc
     2761 gatggggtct ttgcctgtcg ccgggcatgt gtcgaggccc gtggggcagc ggaaggcggg
     2821 cgcgcgctcg gccggcgtgt cggccacgaa gtcattatag acggagcagg cgtcctggaa
     2881 cgtgtggtac aggccgagcc agtggccgac ctcgtgcgtg cccgtgtcgc cctcgttgta
     2941 cggcacctcg gtcccgcccg gcaggcttga gtagaggcag accacgccgt ccatcttcgg
     3001 gtccgactcg taggagaacg ggaaggtcgc ccagcccagt agcgtgccgc ccgcgttgtt
     3061 cgtgtagaag ttgagcacgt cggggccgcc cacgcgcaga gccgtcttca tctcgcgctc
     3121 ggccctcgac ccgtagccgg cgttgaacca ctccaggttc gtcgtgcggt cgacgcccac
     3181 gagcgcgaag cggaagggcg tcgcggccgc cccctcgccg gtcgccccgg cgaaggccgc
     3241 gttgagcacc gcgatctggt cgttaatcat cctgctcgtg atgtcgccgt ttgagacgcc
     3301 ccggcccttg ttgatgacgt ggaagaagac ggggaccgtg accgagcccg acttccttat
     3361 ctggcctggc gagcgcgtcg agttgaattc g
//
LOCUS       DASPKR010000424         2097 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_966607, whole genome shotgun sequence.
ACCESSION   DASPKR010000424 DASPKR010000000
VERSION     DASPKR010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_966607"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..292)
                     /locus_tag="VD968_11490"
     CDS             complement(<1..292)
                     /locus_tag="VD968_11490"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HYE15056.1"
                     /translation="MSTETYDVVIVGGGPAGASAGVRLASAGARVLLAEQRRFPRPKL
                     CGEFISPECLAHFARLGVAESMAEARGAEVFETVFYTRTGRRASVPSAWFGGA"
     gene            complement(359..1072)
                     /locus_tag="VD968_11495"
     CDS             complement(359..1072)
                     /locus_tag="VD968_11495"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYE15057.1"
                     /translation="MLDRFRRRSYELEHLDLGDYTDEEYEGCLVELRRVNRWLGDARA
                     LRRSVLTEIGRDAARAFTLLDVGAGSGELLREAARWARAQGIEARLVGLELNARSALS
                     ILEESEGFGEIAAVRGDALRLPFADGAFDYCMCSLFTHHLTDERLVAALREMARVARR
                     RVFVIDLHRHPVAYYFYTTAGRLLLHNRLVREDGALSILRGFVPEELRRLAVRAGLEG
                     VEVRRRFPYRLVLSAEARG"
     gene            complement(1098..1955)
                     /locus_tag="VD968_11500"
     CDS             complement(1098..1955)
                     /locus_tag="VD968_11500"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HYE15058.1"
                     /translation="MKSLVKQLLILALLSGAAAAQTPGAGAAKRYSQDGLSFDYPGGW
                     ALTDKSTPQAQHLVLARAGNSAVIMVIALRGVITSKEQLAAAREAVTKPYATTLAQQF
                     GVKEVPANATQCQPLGKEGLATGFKLSGTYGGQPSTGEIYSLMLGRRFVSVLYVRADE
                     DDAQAAPAWKAVLDSLSVETPAGAPPAPDDLKSVVSGGVLEGKLLKKGRPEYPGAAKA
                     ARAQGVVAVQVVVDEAGDVVSAKALGGHHMLREESERAAMKSKFTPTVLCGRPVKVTG
                     VITYSFVLQ"
BASE COUNT          329 a          793 c          658 g          317 t
ORIGIN      
        1 cggccccgcc gaaccacgcg ctcggcacag acgcacgccg gcccgtgcgc gtgtagaaga
       61 ccgtctcgaa gacctccgcg ccccgcgcct cggccatcga ctcggccacc cccagccgcg
      121 cgaagtgcgc gaggcactcc ggcgagatga actcgccgca cagcttcggc cgcgggaagc
      181 gcctctgctc cgccaaaagc acgcgcgcgc ccgccgacgc cagacgcacg cccgcgctcg
      241 cccccgccgg ccccccgccg acgatcacca cgtcgtaagt ctccgtgctc aacgcctcac
      301 gctaaccgtt ccgcgtccgg cgccccgcgt cgtcatttcg gcgcaccgac cgcgaccttc
      361 agcctctcgc ctccgcgctc agaaccaggc ggtaagggaa ccgccgcctc acctcgaccc
      421 cctcaaggcc cgcgcgcacg gccagccgcc tcaactcctc cggcacgaag ccgcgcagga
      481 tggagagcgc gccgtcctcg cgcaccaaac ggttgtgcag gaggagccgg cccgccgtcg
      541 tgtagaagta gtaggccacg gggtggcggt gcaggtctat gacgaagacg cgccggcgcg
      601 ccacgcgcgc catctcccgg agcgccgcga cgagccgctc gtccgtaagg tggtgcgtga
      661 agagcgagca catgcagtag tcgaacgcgc cgtcggcgaa ggggagccgg agcgcgtcgc
      721 cgcgcacggc cgcaatctcg ccgaaccctt cggattcttc cagaatgctc agcgccgagc
      781 gcgcgttaag ctctaaacca acgagcctcg cctctatgcc ctgcgcccta gcccaacgcg
      841 ccgcctcgcg cagaagctcg cccgagcccg cgccgacgtc cagcagcgtg aaggcccgcg
      901 cggcgtcgcg cccgatctca gtgagcaccg accgcctgag cgccctcgcg tcgcctagcc
      961 agcggttgac gcgccgcagc tcgaccagac agccctcata ctcctcgtcc gtgtagtcgc
     1021 cgaggtctaa gtgctcaagc tcatagcttc gccgacgaaa cctgtccagc atggctcgga
     1081 cggggcgcgg ccccgcgtca ttggaggacg aagctgtacg taatgacgcc ggtcacctta
     1141 acgggccgcc cgcagagcac cgtcggggtg aacttggatt tcatggcggc gcgctcgctc
     1201 tcttcccgca gcatgtgatg gccgcctaaa gccttggccg agacgacatc gcccgcctcg
     1261 tcaacaacca cttggacggc gacgacgccc tgcgcgcgcg ccgccttcgc cgcgccaggg
     1321 tattcgggcc gccccttctt aagcagcttt ccttcgagca cgccgcccga cactacgctc
     1381 tttaggtcgt cgggcgcggg cggggcgccg gccggcgttt cgaccgaaag cgagtcgagc
     1441 acggccttcc acgccggggc ggcctgcgcg tcgtcctcgt ccgccctgac atagaggacg
     1501 ctgacgaagc gcctgcccag catgagcgag taaatctcgc cggtgctcgg ctgcccgccg
     1561 taagtgccgc tcagcttgaa ccccgtcgcc aagccctcct tgcccagcgg ctggcattgg
     1621 gtcgcgttgg ccggcacctc cttgacgccg aactgttgcg caagcgtcgt ggcgtaaggc
     1681 ttcgtcaccg cctcgcgcgc ggccgcgagc tgctctttgc tcgtgatcac tccgcggagc
     1741 gcgattacca tgatgacggc ggagttcccc gcgcgcgcga gcaccaagtg ctgggcctgc
     1801 ggcgtgctct tgtcggtcag agcccacccg ccggggtagt cgaacgagag gccgtcctgg
     1861 gagtagcgct ttgcggcgcc tgctcccgga gtctgggccg ccgcggcgcc ggacaggagg
     1921 gccaggatta ggagttgctt cacgaggctt ttcatcaaca cgtccctttt ccggcttcag
     1981 accctctcga cgactagcgc actgttttta gagccgaagc ctatgcagtt gcacagcgcc
     2041 acgcgcacgc tgccctcgcg cgcgctattg ggcgtgtagt cgaggtcgca atcgggg
//
LOCUS       DASPKR010000425         4835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_966861, whole genome shotgun sequence.
ACCESSION   DASPKR010000425 DASPKR010000000
VERSION     DASPKR010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4835)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4835
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_966861"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            394..915
                     /locus_tag="VD968_11505"
     CDS             394..915
                     /locus_tag="VD968_11505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15059.1"
                     /translation="MKDFKQFTLAAAVLLLAGLFTTAAAQRETTTRTDIYTIQGDLVA
                     KGVVPSAPGTLYATYAGKVQSRTSTKSSRVKAFSLSLQYTVQGTTAMVISGRWTLTTV
                     REGLEFVSGGSVEGGVTMSLKSDKTPAGGAYTLNFNGDDPELPSSGNFSLSVDGKKTK
                     VAGSIALNHTVVL"
     gene            1028..4834
                     /locus_tag="VD968_11510"
     CDS             1028..4834
                     /locus_tag="VD968_11510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15060.1"
                     /translation="MFKRQWVLIVGLLLAQAGGALHGASHRAEARGGAASGDGRAVAA
                     TPAAASQIDMPLAFVENRGQWGNSTKFALLNGSLAARFEPNAIRLHTAAGERAAAVGL
                     VFEGASPRAQVSGEGEQAGRYNFFVGNDPARWRSGVPAFGGVLYRGLYRDIDLRVRES
                     AGVLEYDLLLAAGADLSKVAVRADGAARLEVAADGALLIHTAHGPLRQTPPTTWEELP
                     NGERRPVVCRFRQIDARRYGFTVEGRDHSLPLVIDPGLEWATYLGGGGHEVIRDMAVA
                     RDGSGDIVLVGSTSSLDFPATGGSFNANGQASFVARLSASGSGVVYATLFGGSGATGN
                     DFAAAVTLDAQGAPVVVGNTGSNDFPVTAGSYDGSYNGGGDAFVTRFDAAGSRLVFST
                     FLGGAKDDPSSRFYSSSGYDVANAVGLDPAGSIIVAGYTTASTFPATAGAYDTTPAPF
                     SDATTASMQDGFVARVSADGSQLTYSTYLGGQAVDTVHDLAVDAGGVVSLVGYTIPLS
                     NRDADGNELPLGTAFPATAGAYDATYNGNGDAVLVRLNPAGGGASDLQYSTFLGGNDT
                     DEAWAVALDPNDHTSVAVIGETFSGNFPVTASAFGKTHFMPGDATMVTVSRFRFPTAG
                     GGSLAWSTYYGGPGFQSADDGFVDETGAVVVVGSNSTSSPPTTERAFDRTPEVSDGFV
                     ARVSADGTQLLYSTLLGGSSFEGNLRAVGLGNNAVAVAGQTKSTDFPVTPGAYDTIYS
                     TSGSPSEFNVYDTFIARLTLAPVETGDVTAAAPSLVVPAASAAFTAPAVVNFDWADAD
                     DTSGVEAYHIQVSPNAAFTDGNNARTSGWFEKWVPASEASADFSQSFVGTFYWRVQTL
                     DRAHNLSAWSEVRTFTIGAPVPPAAPNLVYLPNSARVPPARSITFMWDAVGGATSYEI
                     QIDDSSGFRAPLIAGRGGLTTTQFAQTFTRETSYWWRVRAFNAAGAGPWSATRTFQVK
                     RGASVPPPPTGAVTLSALALNPSSLTGGASAQGTVTLSGPAPSGGALVTLSSSNAGVA
                     SVPASVNVAAGATSAAFTVTTAGVNAATTVTVTAAYGGATRTATLTVQPATTPPAAAL
                     SSLALNPTSVNGGGASQGTVTLTAAAPSGGALVTLSSSSASASVPASVTVPAGATSAG
                     FTVTTQAVSSSVTATITAAYGGATRAATLTVNAQAPPPATDTVAIQRAEYDTDKRELR
                     VEATSSSASAVLRVYVASTGQLIGTLADNGGGRYGGQFSVSTNPQTVLVRSSLGGSAT
                     RAVTAN"
BASE COUNT          729 a         1751 c         1628 g          727 t
ORIGIN      
        1 tcgtgtttca ccctgaaaca catttcgccg aggcgggtac tcgtctgagg cgtcgggctc
       61 gtttacaggc gactccggcc ctttgtcatc gtcgaagagt gaacttgcaa tctgggggcg
      121 cgcagcgcgc gtgtcgcccc ctcgcgtcgc gtgtcggaga cgcgtgcgcg aagacgggga
      181 tggcggaggg gtacgccgcg tgcaaagccc cctccacgct ctcgttcgct cgagccgcgc
      241 ggggccgcct cgaaatctaa aaggcagccc cgatgtattt cgcgagccgt tctccgcact
      301 gttacttggg tcagcgcggc gcgcagacga tggcgaacag atttcgtcgg cccaactcgg
      361 cactcaactg acctcgacac tgagacgacc acgatgaagg acttcaaaca attcaccctc
      421 gcggcggccg tactacttct cgccggatta ttcaccaccg ccgccgcgca gcgggagacc
      481 acgacgcgca cggacatcta cacgatccag ggcgacctgg ttgcgaaggg cgttgtccct
      541 tccgcgccgg gcactctcta cgcgacctac gccggcaagg tgcagagccg cacctcgacg
      601 aagtcctcgc gggtcaaggc gttcagcctc tcgctccagt acacggtgca gggtacgacg
      661 gcgatggtga tcagcggccg gtggacgctg acgacggtga gagaaggtct tgagttcgtc
      721 agcggcggct cggtggaggg tggcgtcacg atgtcgctca agtccgacaa gacgcccgcg
      781 ggcggcgcct acacgctcaa cttcaatggc gacgacccgg agctgccctc gtccggcaac
      841 ttcagcctgt ccgttgacgg caagaagacg aaggtcgccg gctccatcgc cctcaaccac
      901 acggtcgttc tttaagtgaa taagtgatta agtgacggtg aggaagaaag ctcttcaaat
      961 cattcatcac cgctctttta cggcttgtca ccaagccctc atcaaccggc aggcggagac
     1021 gaagttcatg tttaagcgac agtgggttct aatcgtcggg ttacttctgg cccaggccgg
     1081 cggggcgctg cacggcgcgt cgcaccgcgc cgaggcgcgc gggggcgcgg cgtcgggaga
     1141 cgggcgcgca gttgcggcca cccctgcggc ggcgtcacag attgacatgc cgctggcttt
     1201 cgtggagaac cgcggccagt ggggcaactc gacgaagttc gcgctgctca acggcagttt
     1261 ggccgcgcgc ttcgagccga acgcgatccg tctccacacc gccgccgggg agcgcgcggc
     1321 ggcggtcggg ctcgtttttg aaggcgcttc gccgcgcgct caggtttcgg gcgagggcga
     1381 gcaggcgggc cgctacaact tcttcgtcgg caacgacccc gcgcgctggc gctcgggcgt
     1441 ccccgccttc ggcggcgtgc tctaccgcgg cctgtaccgc gacatagacc tgcgcgtgcg
     1501 cgagtcggct ggcgtgctgg agtacgacct gctgctggcc gccggcgccg acctgtcgaa
     1561 ggtggcggtg cgtgccgacg gcgcggcgcg cctcgaagtg gccgccgacg gcgcgctgct
     1621 gattcacacg gcccacggcc cgctccgcca gacaccgccg acgacgtggg aggagttgcc
     1681 gaacggcgag cgtcgtccgg tcgtctgccg cttcaggcag atcgacgcgc gccgctacgg
     1741 cttcacggtc gaggggcgcg accattcgct cccgctcgtc atcgaccccg gcctcgaatg
     1801 ggcgacctac ctcggcggcg gcggccacga agtgatccgc gacatggcgg tggcgcgcga
     1861 cggctcgggc gacatcgtcc tcgtcggctc gaccagttcg ctcgacttcc cggcgaccgg
     1921 cggcagcttc aacgccaacg gccaggcgtc gttcgtcgcg cgcctcagcg cctccggctc
     1981 aggggtagtt tacgcgacgc tcttcggcgg ctccggcgcg acgggcaacg acttcgccgc
     2041 cgccgtcacc ctcgacgcgc agggcgcgcc cgtcgtcgtc ggcaacaccg gctcgaacga
     2101 cttccccgtc accgcgggct cctacgacgg gagctacaac ggcggcggcg acgccttcgt
     2161 cacgcgcttc gacgccgcgg gcagccgcct cgtcttctcc accttcctcg gcggggcgaa
     2221 ggacgacccg tcgagccgct tttactcctc gtcgggctac gacgtggcga acgccgtcgg
     2281 cttagacccg gccggctcga tcatcgtcgc cggctacacg acggcgagca ccttccccgc
     2341 gacggccggc gcctacgaca cgacgcccgc ccccttcagt gacgcgacga cggcctccat
     2401 gcaggacggc tttgtcgcgc gcgtcagcgc ggacggctcg caactcacct actcgacgta
     2461 cctcggcggg caggcggttg acacagtcca cgacctggcc gttgacgcgg gcggcgtcgt
     2521 ctcgctcgtc ggctacacga tcccgctctc gaaccgcgac gccgacggca acgagcttcc
     2581 actcggcacg gccttccccg cgacggccgg cgcttacgac gcgacttaca acggcaacgg
     2641 cgacgccgtg ctcgtgaggc tcaaccctgc cggcggcggt gcgtccgact tgcagtactc
     2701 gactttcctc ggcggcaacg acacggacga ggcgtgggcc gtcgcgctcg acccgaacga
     2761 ccacacgtcg gtggcggtca tcggcgagac cttctccggc aacttccccg tcaccgcctc
     2821 ggccttcggc aagacgcact tcatgcccgg cgacgcgacg atggtgaccg tctcgcgctt
     2881 ccggttcccg actgcgggcg gcggctcgct cgcgtggtca acctactacg gcggccccgg
     2941 cttccagtcg gccgacgacg gcttcgtgga cgagacgggc gcggtcgtcg tcgtcggctc
     3001 gaactcgacg agcagcccgc cgactaccga gcgcgccttc gaccgcacgc ccgaagtctc
     3061 ggacggcttc gtggcgcgcg tcagcgcgga cggcacgcaa ctgctctact cgacgctcct
     3121 cggcggctcg tccttcgagg ggaacctccg cgccgtcggg ctcggcaaca acgccgtcgc
     3181 cgtcgcgggg cagaccaaat cgaccgactt ccccgtcacg cccggcgctt acgacacgat
     3241 ctattccacg agcgggtcgc cgagcgagtt caacgtctac gacaccttca tcgcgcgcct
     3301 gacgctcgcg cccgtcgaga cgggcgacgt gacggcggcc gcgccgtctc tggtcgtgcc
     3361 cgccgcgtca gcggccttca cggcccccgc ggtcgtcaac ttcgactggg ccgacgcgga
     3421 cgacacttcc ggcgtcgagg cttaccacat acaggtcagc ccgaacgcgg ccttcaccga
     3481 cggcaacaac gcgcgcacct ccggctggtt cgagaagtgg gtacccgcct cggaggcgag
     3541 cgcggacttc tcgcagtcgt tcgtcggcac cttctactgg cgcgtgcaga cgctcgaccg
     3601 cgcgcacaac ctgagcgcgt ggtcagaggt gcgcaccttc acgatcggcg cgcccgtgcc
     3661 gcccgccgcc ccgaacctcg tctacctgcc gaactcggcg cgcgtgccgc cggcgaggag
     3721 catcacgttc atgtgggacg cggtaggcgg ggcgacgagc tacgagattc agatcgacga
     3781 ctcaagcggc ttccgcgcgc cgctcatcgc gggccgcggg ggactgacga cgacgcagtt
     3841 cgcgcagacg ttcacgcgcg agacgagcta ctggtggcgc gtgcgggcct tcaacgccgc
     3901 gggcgcaggc ccctggtcgg cgacgcgcac gttccaggtg aagcgcggcg cgagcgtgcc
     3961 gcccccgccg acgggcgcgg tcacgctctc ggcgctcgca ctcaacccgt cgagcctgac
     4021 gggcggcgcg tcggcgcagg gcaccgtgac gctcagcggc ccggcccctt cgggcggcgc
     4081 actggtcaca ctttcgagta gcaacgccgg cgtggcctcg gtgcccgcga gcgtcaacgt
     4141 cgcggcgggc gcgacgagcg cggcgttcac cgtgacgacc gccggggtca acgcggcgac
     4201 gaccgtcacc gtcaccgccg cttacggcgg cgcgacgcgg acggcgacgc tcacggtgca
     4261 gcccgcgacg actccgccgg cggcggccct gtcgtcgctc gcgctcaacc cgacgagcgt
     4321 gaatggcggc ggcgcgtcgc aaggcacagt gacgctgacg gcggcggccc cttcgggcgg
     4381 cgctctcgtc acgctttcga gttcgagcgc gtcggcctcc gtgccggcga gcgtcacggt
     4441 cccggcgggc gcgacgagcg ccggcttcac ggtcacgacg caggcggtct cgtcctcagt
     4501 cacggcgacg atcacggcgg cctacggcgg cgcgacgcgc gcggcgactc tgacggttaa
     4561 cgcgcaggca ccgccgccgg cgaccgacac cgtcgccatc cagcgcgccg agtacgacac
     4621 ggacaagcga gagctgcgcg tggaggcgac gagcagcagc gcgagcgccg tgctgcgcgt
     4681 ttacgtggcg tccacgggcc agttgatagg cacgctcgcc gacaatggcg gcggcaggta
     4741 cggcggacag ttctccgtca gcacgaaccc gcagaccgtc ctcgtccgca gtagcctcgg
     4801 gggttcggcg acgcgcgccg tcacggctaa ctaag
//
LOCUS       DASPKR010000426         7568 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1484578, whole genome shotgun sequence.
ACCESSION   DASPKR010000426 DASPKR010000000
VERSION     DASPKR010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7568)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7568
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1484578"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..990)
                     /locus_tag="VD968_11515"
     CDS             complement(<1..990)
                     /locus_tag="VD968_11515"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYE15061.1"
                     /translation="MRFSKHYRLRSLLASLAVAASLSAATPRQASAGARAFSEPRAKI
                     SRDLLAGLRRDGDRGGRVNVIVQLEDGAAISPLDALVGALGGRVTRRLERLGARAVSL
                     PRRAVEALAARPEVRFVSPDRAVAAAGHLETTTGAAAVRTQVTFSLLGITTTTTLDGV
                     GVGIAVVDSGIDSGHQAFRGALGESRVAVARDFTGEGRTDDPFGHGTHVASIAAGGDV
                     WGGAYTGLAPAAKIINLRVLGSEGTGTTSGLLAALDWALLNRAAYQIGVVNLSLGTAA
                     VDSYEDEPVCRAVRRLVDSGVVVVAAAGNNGKDGAANKIYGQIHSPGIEPSAIT"
     gene            1524..2624
                     /locus_tag="VD968_11520"
     CDS             1524..2624
                     /locus_tag="VD968_11520"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HYE15062.1"
                     /translation="MPLAEHKPRLLIADDDPLVLGVLHEFLCGRYDCEAAASAEAALE
                     LLRSGEFQVVITDIAMGGMSGLEMVPHALRLAPDAVIIMVSGAQTLESAVEAMRAGAF
                     DYLVKPFDLQHVEVAVERALRHQSLLAAKRRHESRLEELVALRTAELDGALRSLEEAY
                     RSTLKALTAALETRDTDTRGHSERVVSFSLRLGREMGLGEEELRALEFGALLHDVGKI
                     GIPDAILRKPSGLTSEEWLTMRAHPSLGGLILRGIEFLSGAARVVEQHHEKWDGTGYP
                     AGLRGGEIDLNARIFAVADAFDAMTSDRVYRVGRPYEGAALELAACAGTQFDPSVVAA
                     FRRVPAGDWDELRRHSVKAGRCASGARVGLAA"
     gene            2790..3197
                     /locus_tag="VD968_11525"
     CDS             2790..3197
                     /locus_tag="VD968_11525"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE15063.1"
                     /translation="MPERENGEPVVLVVDDFEDTRAVMRRMLELNGCRVIEAADGEQA
                     IELARAETPDLILMDLNMPVLDGFNATLRIREYEPTRDTPVVAVTAYDTSEFRAAASA
                     VGCSDYVTKPLDIERVSRLLNKLLPQRGGVAAD"
     gene            complement(3274..3882)
                     /locus_tag="VD968_11530"
     CDS             complement(3274..3882)
                     /locus_tag="VD968_11530"
                     /inference="COORDINATES: protein motif:HMM:NF015147.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LEA type 2 family protein"
                     /protein_id="HYE15064.1"
                     /translation="MRRKFVGLGAVGKLFALALVVLASASAAQAQGRIPVERLGGSLV
                     KIKVGELTLESIDFRDQTARLSLGLDVSNGLLPVTLKDFDYSLRLNGQDAIEGTYAGQ
                     LRIGGRNASRVNLPVTVHLRSIPGTVWSAFRNRGRVAYDLETGFTLPLYVTERRFDQS
                     FSGEVPLRTLVDAASILRASRMTDPRASRDDGRYSPGNIWPF"
     gene            complement(4066..4242)
                     /locus_tag="VD968_11535"
     CDS             complement(4066..4242)
                     /locus_tag="VD968_11535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15065.1"
                     /translation="MTDERETPREEPADSSEDQTGDTGVRETGDITGASSTHAGAGGR
                     MGNTGGTGTAPTEG"
     gene            4355..7057
                     /locus_tag="VD968_11540"
     CDS             4355..7057
                     /locus_tag="VD968_11540"
                     /inference="COORDINATES: protein motif:HMM:NF023266.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HYE15066.1"
                     /translation="MPVRILSILLLAATAFAAAAEARGTEEKAPMTETLAGVPRELAR
                     RRAAHYSGVRYELGIALRPKAELLKGALKISFTRKAGAGDLVLDWRVLDKGVDPASRV
                     SDIRANGRKVDNARFADEHIFIPASRLKEGENTVEMSFASPVSASGSAVTRYLDREDN
                     SEYIYTLFVPSDASTVFPCFDQPDLKARFRLTAEVPSSWQVITNTESDGRVHMDATEA
                     DSFTRYRFAETEPISTYVFAFAAGPFESLRDDSSPHRTRLFVRKSRAERARKEAAEVF
                     RLNREALKFFEGYFAHRFPFTKYDLVVIPEFAYNGMEHAGATFLREESILFPSDPTSA
                     DLLARADVMFHEAAHQWFGDLVTMRWFDDLWLKEGFATFMGYKAVERLMPEYDAWKVF
                     HLRNKPLAYLTDVTKGTTPIWQEIANLSAAKSAYGNIVYRKAPSMLRQAEFYLGEREF
                     REAVRLLVKEHAYANAEWADLVRAFERTSGRSLSAWADAWVKRRGMPDVRVRWSANRR
                     GRVASLAVEQRDVLGEGGAWPMKVKLLLAPAAAGAKPETMTVTLRGAGSTRVREAVGK
                     PRPAFVFANFEDYGYGRFLLDDASREAVVRDIGKIEDDFLRALLWGSLWDSVREAEMA
                     PADFVSLVVREAPKESDDVALALILARAQTAFLRYLSTGQTLELAPRLEAMLRDGMEK
                     APTQGLRITYFRTFREVATTAGARQHLLRILSGEAQVPGMTLRSRDRFDIVRALMTGG
                     DGRAPELLRKLSAEDKSDDARRYAYAAGAAWPDGEVKRKYFRQYLTDKELPESWMEAS
                     FGPLNAPRQSALTREMLPAALAELPALKRTRKIFFVNGWLAAFVGGQCDERALAVVTG
                     FLSRGELDRDLRLKVLEAADGLERCARIRAKYAREGAGSATAAP"
     gene            7117..>7568
                     /locus_tag="VD968_11545"
     CDS             7117..>7568
                     /locus_tag="VD968_11545"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HYE15067.1"
                     /translation="MSEPRGTVRVVTYNVHKCQGLDRRVRPARIASVLRETGADVIAL
                     QEVVSVEDDARREMHQARFIAEELGYEYRVGENRKHQGGSYGNVVLTRMPVERCCNFD
                     ITWRWREPRGCLRVDVRLGDGGAAPVLHVFNVHLGTAYMERRNQGRRLV"
BASE COUNT         1193 a         2654 c         2549 g         1172 t
ORIGIN      
        1 tgttatggcc gaaggctcga tgccgggtga gtgaatctgg ccgtagattt tgttggccgc
       61 gccgtccttg ccgttgttgc ccgctgcggc gacgacgacc acgcctgagt caactagcct
      121 gcggacggcg cggcagacgg gttcgtcctc gtatgagtcc acggccgccg tgccgaggct
      181 caggttgacg acgcctatct ggtaagcggc gcggttcaag agcgcccagt cgagcgcggc
      241 cagcagcccc gaggtcgtcc ccgtgccttc ggagccgagc acgcgcaggt tgattatctt
      301 cgccgcgggc gcaagccctg tgtacgcgcc gccccacacg tcgccgcccg cggcgatgga
      361 ggcgacgtgc gtgccgtgac cgaaggggtc gtccgtcctc ccctcgcccg tgaagtcgcg
      421 cgcgactgcg acgcggctct cgccgagcgc gccgcgaaaa gcctggtggc ccgagtctat
      481 gcctgagtca actacggcga tgccgacgcc gacgccgtcg agcgtcgtgg tcgtcgtaat
      541 cccgagcagg gagaaagtga cctgcgtgcg gacggccgcc gcgcccgtcg ttgtctccag
      601 gtggccggcg gccgcgaccg ccctatccgg cgagacgaac cgaacctcgg ggcgcgcggc
      661 gagcgcctcg accgcgcggc gaggcaggct cacggcccga gcgcccaggc gttcgagcct
      721 tcgcgtcacg cgccctccga gggcgccgac gagcgcgtcg agcggcgata tggccgcgcc
      781 gtcttcgagt tgcacgatga cgttcacgcg cccgcccctg tcgccgtcgc ggcgcaggcc
      841 cgcgaggagg tcgcgcgaga ttttggccct gggctcggag aatgcacgcg cgcccgcgga
      901 ggcttggcgc ggtgtcgccg ccgagagtga ggcagcgact gcgagcgagg cgagcaggga
      961 gcgcagacgg taatgctttg agaatctcac tgcgtccctt cctctcgcgt gccctgatgt
     1021 ttagcgggtt gaaataggcg gcgccgaatc gtcgtctgcc cggaaattcg agcaaggcac
     1081 gttccagcac agcctcagcc ctcagcgaac gcgcgccggc ccgccgcccg gcccgttttc
     1141 cccacaaacc cgcgaaacca cgccgcacgg cgcggccccg gacccagccc ttccgccctc
     1201 ctccgccgct gcacaatgcc ctcgcccgtg aatcccgccg ctgtgatttg catcagccgt
     1261 cccgtcgcgc gtgcctgcgc gcacgcctgc tcgttcctcc gttgtagaaa atgaatcagc
     1321 taatgggcgg gcaaagaatc tggcgagcct ttcgctggca cgccccttgc cgccgccctt
     1381 gcgcggcagc cccgaagaga agcccccgag aacaattcgt ctgaacgaag gccgcgcgca
     1441 ggcgcccccg cgccgccgcg gctttcgagc gagggcgcgc ggcccgcccc gacccgtgtg
     1501 ggccgcgcgc cgagggccga cgtatgcctc tagccgaaca taaaccgcgc ctgctcatag
     1561 cggatgacga cccgcttgtg ctgggcgtac tgcacgagtt cctctgcggg cgttacgact
     1621 gcgaggccgc cgcttcggcc gaggcggcgc tcgaactgct ccgctcgggc gagttccagg
     1681 tcgtcataac cgacatagcg atgggcggca tgtcgggcct agagatggtg ccgcacgcgc
     1741 tccgcctcgc ccccgacgcc gtcataatca tggtgagcgg cgcgcagacc ctcgagagcg
     1801 ccgtcgaggc catgcgcgcc ggcgccttcg actacctcgt gaagcccttc gaccttcagc
     1861 acgtcgaggt cgccgtcgag cgcgctctgc gtcaccagtc gctcctcgcg gcgaagcgcc
     1921 gacacgagag ccggctggaa gagctggtcg cgctgcgcac ggcagagctc gacggcgctc
     1981 tccgctcgct cgaagaggct taccgctcca ccctgaaggc cctgacggcg gcgctggaga
     2041 cgcgcgacac ggacacgcgc ggccactcgg agcgcgtcgt gagcttcagc ctgcggctcg
     2101 ggcgcgagat ggggctgggc gaagaggagc ttcgcgcgct ggagttcggc gcgctcctgc
     2161 acgacgttgg gaagatcggc atacccgacg ccatactgcg caagccttcg ggcctgacga
     2221 gcgaggagtg gttgacgatg cgcgcgcacc cctcgctcgg cgggttgatc ctgcgcggga
     2281 tagagttcct ttcgggcgcc gcgcgcgtcg tcgagcagca ccacgagaag tgggacggca
     2341 cgggctaccc cgcggggctc cgcggcgggg agattgactt gaacgcgcgc atattcgccg
     2401 tcgccgacgc cttcgacgcc atgacgagcg accgcgtcta tcgcgtgggc cggccctacg
     2461 agggcgcggc cctcgagctt gcggcctgcg ccggcacgca gttcgacccc tcggtcgtcg
     2521 ccgccttccg ccgcgtcccc gccggcgact gggacgagct acgccgccac tccgtgaagg
     2581 ccgggcgatg cgcgagcggc gcgcgcgtcg gcctcgcagc ctgacgaaaa actgcaacgc
     2641 gcggcgcgcc ccgcggcctc taacctgcgg ggcggggcgg cggctttact tcggcgcggt
     2701 ttcgagtatc attcccgagc cccggttata aaggttcgga agctcaggcg gcgcgccgcg
     2761 gcgcgctcgg gtagggcgga ggcgtgtgga tgcctgaacg tgagaatggc gagccggtcg
     2821 tgctggtggt tgacgacttc gaggacacgc gcgcggtgat gcgccgcatg ctcgagctga
     2881 acggctgccg cgtcatcgag gccgcagacg gcgagcaggc catcgagctc gcgcgcgcgg
     2941 agacgcccga ccttatcctg atggacttga acatgcccgt gctcgacggc ttcaacgcga
     3001 cgcttcgcat acgcgagtac gagccgacgc gcgacacgcc cgttgtggcc gtcaccgcct
     3061 acgacacctc cgagttccgc gccgcggcca gcgccgtcgg ttgcagcgac tacgtcacta
     3121 agccgctcga catcgagcgc gtctcgcggc tcctcaacaa actcctcccg cagcgcggcg
     3181 gcgtcgcggc cgactgaaaa gacacttcga aatgaagaag gggaggagcc cgttcaaaag
     3241 gctcctcccc tccgtcgttt acttcttcga ttttcagaaa ggccagatgt tgccgggcga
     3301 gtagcggccg tcgtcgcggc tcgcgcgcgg gtctgtcatg cggctcgcgc gcagtatgga
     3361 tgccgcgtca acgagcgtgc gcagcggaac ctcgcccgag aagctctggt cgaagcggcg
     3421 ctccgtgacg tagagcggga gcgtgaagcc cgtctccagg tcgtacgcga cgcgcccgcg
     3481 gttgcggaac gcagaccaga ccgtgccggg tatcgagcga aggtgaaccg tcacgggcaa
     3541 attcacgcgc gaggcgttgc gcccgcctat cctcaactgg ccggcgtaag taccctcgat
     3601 tgcgtcctgc ccgttcagtc gcaggctgta gtcgaagtcc ttgagcgtga cgggcagaag
     3661 gccgttcgac acgtcgaggc cgaggctgag gcgcgcagtc tggtcgcgga agtctattga
     3721 ctcgagcgtc agctcgccca ccttaatttt gacgaggctg ccaccgaggc gctcgacggg
     3781 tatgcgccct tgcgcctgcg cggccgacgc cgaagccagc acgacgagcg ccagcgcaaa
     3841 cagtttaccg accgccccga gaccgacgaa tttccttctc ataaagccta actccctcca
     3901 gctttcgact gcgattagcc cggcccgccg agcacaggtt taataacaac tcgcgtgccg
     3961 tcgcgcccgc ctgaaaaggc gccgaaagtc gaggtttttc gcgcaaacgc cgccgccggg
     4021 gcgcacgaaa acgtcgcccg ccgaagggta tcgtgtggca gcattttagc cctcggtcgg
     4081 ggccgtcccc gtgccgccgg tgttgcccat tcggccgccg gcccccgcgt gcgtcgagct
     4141 tgcgcccgtg atgtcgccgg tctctcgaac gcctgtgtcg cccgtctgat cctcgcttga
     4201 atccgcgggc tcttcgcgcg gcgtctccct ctcgtccgtc atggctcgcc ctccctccga
     4261 ctgagttttt cgcttcggct tgcttggccg aacgtgccgg gcgacaataa actcacctcc
     4321 tgacttttac aaagccttga tcgaaggagc gacgatgccc gtccgcattc tttcaattct
     4381 ccttctcgcc gcgacggcct tcgccgccgc cgccgaggcc agaggcacag aggagaaggc
     4441 gccgatgacg gagacgctgg ctggagtccc gcgcgagctt gcgaggcgcc gcgccgccca
     4501 ctacagcggc gtgcgctacg agttgggcat cgcgctcagg ccgaaggcgg agctgctcaa
     4561 gggcgctctg aagatcagct tcacgcggaa ggccggggcc ggcgacctcg tgctcgactg
     4621 gcgcgtgctc gacaagggcg ttgaccccgc ctcgcgcgtc tccgacattc gcgccaacgg
     4681 ccggaaggtt gacaacgcgc gcttcgccga cgagcacatc tttatcccgg cctcgcgcct
     4741 taaggaaggc gagaacacgg tcgagatgtc gttcgcctcg cccgtgagcg cctcgggcag
     4801 cgccgtcacg cgctacctcg accgcgagga caactccgag tacatctaca cgctcttcgt
     4861 cccctcggac gcgagcacgg tcttcccctg cttcgaccag cccgacctga aagcgcgctt
     4921 ccgcctgacg gccgaagtgc cctcctcctg gcaagtcatc acgaacacgg agtctgacgg
     4981 gcgcgtgcac atggacgcga cggaagccga ctcgttcacg cgctaccgct tcgccgagac
     5041 cgagccgata agcacctacg tcttcgcctt cgccgctggc ccgttcgagt cgctgcgcga
     5101 cgactcttcg ccgcaccgca cgcgcctctt cgtccgcaag tccagggccg agcgggcgcg
     5161 gaaggaggcg gccgaggtct tccgcctcaa ccgagaggcg ctcaagttct tcgagggcta
     5221 cttcgcgcac cggttcccgt tcacgaagta cgacctcgtc gtcatacccg agttcgcgta
     5281 caacggcatg gagcacgcgg gcgcgacctt ccttcgcgag gagtcaatac tcttcccgtc
     5341 agacccgacc tcggccgacc tgctcgcgcg cgccgacgtg atgttccacg aggccgcgca
     5401 ccagtggttc ggcgacctcg tcaccatgcg ctggttcgac gacctctggc tcaaggaggg
     5461 gttcgcgacc ttcatgggct acaaggccgt cgaaaggctt atgcccgagt acgacgcatg
     5521 gaaggtcttc cacctgcgca acaagccgct cgcctacctg accgacgtga ctaagggaac
     5581 gacgcccatc tggcaggaga tagcaaattt gtcggcggcg aagtcggcct acggcaacat
     5641 cgtctatcgc aaggcgccct cgatgttgag gcaggccgag ttctatctgg gcgagcgcga
     5701 gttccgcgag gccgtccggc tcctggtcaa agagcacgcc tacgcgaacg ccgagtgggc
     5761 agaccttgtg cgcgccttcg agcgaacgtc gggccgcagc ctctcggcgt gggccgacgc
     5821 gtgggtcaag cggcgcggca tgcctgacgt gcgcgtgcgc tggtcggcga accgccgcgg
     5881 gcgcgtggcg agcctcgccg tcgagcagcg cgacgtgctc ggcgagggcg gcgcgtggcc
     5941 gatgaaggtg aagctgctgc tcgcgccggc ggcggcgggc gcgaagccgg agacgatgac
     6001 ggtcacgctg cgcggcgcgg gctcgacgcg cgtcagggag gccgtgggca agccccggcc
     6061 cgccttcgtc ttcgcgaact tcgaggacta cggctacggc cggttcctcc tcgacgacgc
     6121 gagccgcgaa gcggtcgtgc gcgacatagg gaagatcgaa gacgacttcc tgcgcgcgct
     6181 cctgtggggc tcgctctggg actcagtgcg cgaggccgag atggcgccgg ccgacttcgt
     6241 ctcgctcgtc gtccgcgagg cgccgaaaga gagcgacgac gtggcgctcg cgctcatact
     6301 agcgcgcgcg cagacggcct tcctccggta cctctcgacc gggcagaccc ttgagctcgc
     6361 gccgcgcctg gaagcgatgc tccgcgacgg gatggagaag gcgccgacgc agggcctgcg
     6421 catcacatac ttccgaacct tccgcgaggt ggcgacgacg gccggggccc gccagcacct
     6481 tctgcgaatc ctctccggcg aggcgcaggt gccgggcatg acgctccgtt cgcgcgaccg
     6541 cttcgacata gtgcgcgcgc tgatgacggg cggcgacggc cgcgcgcccg agctgctgag
     6601 gaagctgagc gccgaggaca agtcggacga cgcccgccgc tacgcctacg ccgcgggcgc
     6661 cgcgtggccc gacggcgagg tgaagcggaa gtacttccgt cagtacctta cggacaagga
     6721 gttgcccgag agctggatgg aggcgagctt cggccccctg aacgccccgc gccagtcggc
     6781 tctcacgcga gagatgctcc cggccgcgct agccgagctt cccgcgctca agcgcacgcg
     6841 caagattttc ttcgtcaacg gctggctcgc ggccttcgtc ggcggccagt gcgacgagcg
     6901 cgcgctcgcg gtcgtaacag gcttcctctc gcgcggcgag ctagaccgcg acctgcgcct
     6961 caaggtgctc gaagccgcgg acggcctaga gcgctgcgcc cgcatccgcg cgaagtacgc
     7021 gcgcgagggg gccggctccg cgacggccgc gccgtgataa actgtcgccc cttagagagc
     7081 gtcaccggcc cggagaggct caaaggagcg gagacgatga gcgagcctcg cggcaccgtc
     7141 cgcgtagtca cttacaacgt ccacaagtgt cagggcctgg acaggcgcgt gcggccggcg
     7201 cgcatcgcgt cggtgctgcg cgaaacgggc gccgacgtga tagcccttca ggaggtcgtg
     7261 agcgtcgagg acgacgcgcg gcgcgagatg caccaggccc gcttcatcgc cgaagagctc
     7321 ggctacgaat accgggtcgg cgagaaccgc aagcaccagg gcggctccta cggcaacgtc
     7381 gtgctcaccc gcatgcccgt cgagcgctgc tgcaacttcg acatcacatg gcgctggcgc
     7441 gagccgcgcg gctgcctgcg cgttgacgtg cggctcggcg atggcggcgc cgcgcccgtg
     7501 ctgcacgtct tcaacgtaca cctcggcacg gcctacatgg agcggcgcaa ccaggggcgc
     7561 cgcctcgt
//
LOCUS       DASPKR010000427         6377 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_319227, whole genome shotgun sequence.
ACCESSION   DASPKR010000427 DASPKR010000000
VERSION     DASPKR010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6377)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6377
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319227"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..891
                     /locus_tag="VD968_11550"
     CDS             <1..891
                     /locus_tag="VD968_11550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15068.1"
                     /translation="VQLERRRDAFAVRSAAYVPLPAGLLRPNFDEPNVSDPAELAGAL
                     AHLVESAGLAKRRRWSVALPEAATRTSILTMESGGVSRAEGEEMLRWKIERTVGAPLE
                     EVRVSREALAPDSQGRPRHLVSAVRLSVLAEYESVFASLGWDAGLILPRHMGEAWWLM
                     REGAGSPDSLLVSSHADGFTAVILRAGRPLYVRGVICEVEDRADELYRFLLFYRDRDA
                     RPEDEGAPPPPVPRERIGRLLVAGPGLDESQAGALVEETLSVPPRAVRPEDVRLSFPP
                     AELDFRQMAAPAGLAALAWA"
     gene            929..1540
                     /locus_tag="VD968_11555"
     CDS             929..1540
                     /locus_tag="VD968_11555"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE15069.1"
                     /translation="MTAHAVSLKKIAALADVDLVRRAIAGREDGFEELVRRYQRPIVA
                     YVYRMVGDYDAALDLAQEVFIKVYNSLGRYRPEFKFSTWIYRIAHNAAIDHLRREGSA
                     RTEELEVEGEGGRAFEKPLASKAPTPEQESERRERRAEIEEVVGQLPPAYRELIVLRH
                     ANDLSYDEIAEVTGLPLGTVKNRIFRAREAMRELFEARGITGM"
     gene            1549..2157
                     /locus_tag="VD968_11560"
     CDS             1549..2157
                     /locus_tag="VD968_11560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15070.1"
                     /translation="MKDGTQSGSGGRCAEAALAAAYLDGELGVGAAAQFERHSRACAD
                     CSDALREQRRLLCMLEAAFDETFSKGSAPALPDNFAREVSARARSDMSGVRAPCERRR
                     ALKICAALSAAAFVLTGFGALDAALAPVWDAARAAGALAGLAGRAAADAGTGAGLVMR
                     AAGGRLVTGHALLLVLQLAALACALLLLLWLISGYRRARASD"
     gene            2259..3251
                     /locus_tag="VD968_11565"
     CDS             2259..3251
                     /locus_tag="VD968_11565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15071.1"
                     /translation="MISPQRHTAGGGVAEVLSVPMPAPRLRGELASLLPKVAAVALLL
                     LLAPAAGRAQGAGDELVVDGSYSGDVFGVGRTVRVRGEVKKGVIAFGGDVIIEGRVEG
                     DAAAIGGSVTQRAGSYVGGDVMVFGGEYRREGETGRNPAAKTIMYAGYEQELRGLARN
                     PASILSPQFSFAFLGLRLLAVLFWFIVSTALTAVSPGAVGRAGARLQLKFGRVVLIGL
                     LGAVVVGPGVAASLHFLPPVLGLLVGFTALLLLLLSYLFGRVVIHAVTGRWLQRVLLP
                     EEKRSESVALLLGAAFWALVLALPYVWPVLVTALVVVSLGLALTARYRMGWRRA"
     gene            complement(3335..4852)
                     /locus_tag="VD968_11570"
     CDS             complement(3335..4852)
                     /locus_tag="VD968_11570"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE15072.1"
                     /translation="MTNRKLLSAFLAFTLFTLSLAAPAAAQAQQQQRPADIPAHPTQL
                     KFAPLSYTPPKRDNYRHVLSNGAVVYAVEDHDLPLVNVSTIVRTGSYLDPAGKEGLAS
                     LTGGQMRAGGTTSKTPEQFDEAADFLAANISSSIGATQGGAGLNVLAKDVDQGLALYF
                     DMLKNPAFNEERLKLAKSQVLQAMERRNDNTSTIEAREWERLMRGEHFSTKFSTKASI
                     ESVTREDMAAFHKRYYHPGNFIFAVSGDFDTKQMLAKLEAAMQGWPVGKEAVPGVPKP
                     THTPVAGVYAVHKADVNQGRVTIGHLGDMRDNPDAFALTIMNDILGGGGFTSRIMSRV
                     RSDEGLAYSAGSDYGLGVYYPGTFEASFQSKSPTTAQAIDIVMEEINRMRTSKVTPEE
                     LETAKNSAVEIFPRFFATAAQIAGTFAQDEYTKRPADYWDKYRERVRAVTAEDVQRVA
                     QKYLAPDKLVILVVGNIDDITKGNPDRPQHSLAKLGTLRRIPLPDPLTMVYPAAP"
     gene            complement(4852..>6377)
                     /locus_tag="VD968_11575"
     CDS             complement(4852..>6377)
                     /locus_tag="VD968_11575"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE15073.1"
                     /translation="FKGTHTVGTKNIEENLKLIKEMDQVRAEIRREEQGLIRKATLGE
                     ISDPKDPKFRSERHKQLLAKFEELTKREKELMVKDEFDRIYTTAGASGMNAGTSNDFT
                     VYFINVPANKLELWFWMESDRLKSPVFREFYSERDVVHEERRLRTDSTPTGKFNEMYE
                     SMFWQSSPYGWPVVGWPSDLEGITREEALEYFAVNYAPNNLTACLVGDFEPAQAVELA
                     KRYFGRLPRGPREPEPVRTREMPQLAEKRMVAYAETVPQARVRYHTVAEGHPDSFALS
                     VLSSLLNGRTGRLYKSLVLEQQVANNAGSNQNSLKYEGYFELSGVAKPGRKPEDVEQA
                     LFKEIERLQKELVPEQELQKVKNQYAANTFRGLQSNFGLMVQLLLRDNTRGWETINTD
                     PARYQAVTPADIQRVVNTYFKPENRTIALYYTKKAEGAAAAAAEDPALAGLSDEEKAQ
                     VGRMRGMLAQAKLEQLKAALAQIEQQAGSVPADKQKAFQVMKKMLEDRIKQLEGGKQ"
BASE COUNT          858 a         2112 c         2282 g         1125 t
ORIGIN      
        1 gtgcagttgg agcggcgccg cgacgcgttc gccgtccgca gcgccgcata cgtcccgctg
       61 cccgcggggc tactgcggcc caacttcgac gagccgaacg tctccgaccc cgccgagctg
      121 gccggcgcgc tcgcgcacct cgtcgagagc gcggggcttg cgaagcgccg ccgctggtct
      181 gtagcgcttc ccgaggcggc gacgcgcacc tcgatactga cgatggagtc cggcggcgtc
      241 tcgcgcgcgg agggcgagga gatgctccgc tggaagatag agcgcacggt gggcgcgccg
      301 ctcgaagagg ttcgcgtctc gcgcgaggcg ctcgcgcccg actcgcaggg gcggccccgc
      361 cacctcgtta gcgcagtgcg cctctccgtg ctcgccgagt acgagtcggt cttcgcctcg
      421 ctcgggtggg acgccgggtt gattctgccg cgccacatgg gcgaggcctg gtggctcatg
      481 cgagaggggg cgggctcgcc cgactcgctg ctggtgagct cgcacgccga cgggttcacg
      541 gccgtcatac tgcgcgcggg ccggccgctc tacgtgcgcg gcgtcatctg cgaggtggaa
      601 gaccgcgccg acgagctata ccgcttcctc ctcttctacc gcgaccgcga cgcgcgcccc
      661 gaggacgagg gcgccccgcc gccgcccgtg ccgcgcgaga ggatagggcg gctgctcgtc
      721 gccgggccgg gcctcgacga aagccaggcc ggcgcgctcg tcgaggagac gctctcggtg
      781 ccgccgcgcg ccgtccggcc cgaggacgtg cgactctcgt tcccgcccgc cgagctcgac
      841 ttccgccaga tggccgcgcc cgccggcctc gccgccctcg cgtgggcgtg aaacttcccg
      901 gccccgcggc gcgtaaaata ttggcgccat gaccgcacac gcagtctcac tcaaaaaaat
      961 agcagcgctc gccgacgttg acttagtccg gcgcgccatc gcgggccgcg aggacggctt
     1021 cgaggagttg gtgcgccgct accagcgccc catagtggcc tacgtctatc gcatggtggg
     1081 cgactacgac gcggcgctcg acctggcgca ggaggtcttc atcaaggtct ataactcgct
     1141 cgggcgctac cgccccgagt tcaagttctc gacctggatc taccgcatcg cgcacaacgc
     1201 cgccatagac cacctgcggc gagagggctc ggcgcgcacc gaggagctgg aggtcgaggg
     1261 cgagggcggc cgcgccttcg agaagcccct cgcgagcaag gccccgacgc ctgagcagga
     1321 gagcgagcgt cgcgagcgcc gcgccgagat agaggaggtc gtcggccagc tcccgcccgc
     1381 ctaccgcgaa ctcatcgtgc tccgccacgc gaacgacctc agctacgacg agatagcgga
     1441 ggtgacgggc ctgccgctcg gcacggtcaa gaacagaatc ttccgcgcgc gcgaagccat
     1501 gcgcgagctc ttcgaggcgc gcggcatcac ggggatgtaa agagggcgat gaaggacggc
     1561 acgcagtcgg gcagtggcgg gcgttgcgcc gaggcggcgc tcgcggccgc ctacctcgac
     1621 ggcgagcttg gcgtcggcgc cgccgcacag ttcgagcgcc actcccgagc ttgcgcggac
     1681 tgttccgacg cgctcaggga gcagcgccgg ctcctctgca tgctcgaagc cgccttcgac
     1741 gagaccttct cgaagggctc ggcgcccgcg ctccccgaca acttcgcgcg cgaggtcagc
     1801 gcgcgcgccc gctccgacat gagcggcgtg cgcgcgccct gcgagcgcag gcgcgcgctc
     1861 aagatttgcg cggcgctctc ggcggccgcc ttcgtgctca cgggcttcgg cgcgctcgac
     1921 gcggcgctcg cgcccgtctg ggacgcggcg cgcgccgccg gggctctcgc cgggcttgcg
     1981 ggccgcgccg cggccgacgc ggggacgggc gcggggctcg tgatgcgcgc cgcggggggg
     2041 cgcctcgtca cgggccacgc gctgctgctc gtcttgcagt tggcggcgct cgcgtgcgcg
     2101 ctcctgctcc tgctgtggct cataagcggc taccgccgcg cgcgcgcgag cgactgaacc
     2161 gagcgggccg aggctacgga agttcgacgg ccagccccga ccggctcccg acggagcgcc
     2221 gggcgctggc cttccttttc ccgagagacg ccgaaagaat gatctcacca cagaggcaca
     2281 cagccggcgg gggcgtcgcg gaggtcttgt ctgtccccat gccggccccg cgcctccgcg
     2341 gtgaactggc ctcgctgctg cctaaggtgg cggccgtcgc gctgctcctg ctgctcgccc
     2401 cggccgcggg cagggcgcaa ggcgcgggcg atgagctcgt tgttgacggc tcgtactccg
     2461 gcgacgtgtt cggcgtcggg cgcaccgtca gggttcgggg cgaggtgaag aagggcgtca
     2521 tagccttcgg cggcgacgtg ataatagagg ggcgagtcga gggcgacgcg gccgccatcg
     2581 ggggctcggt cacgcagcgc gccggctcat acgtcggcgg cgacgtgatg gtcttcggcg
     2641 gcgagtacag gcgcgagggc gagacgggcc gcaaccccgc ggccaagacc atcatgtacg
     2701 cgggctacga gcaggagctt cggggacttg cgcgcaaccc cgcctcgata ctctcgccgc
     2761 agttctcgtt cgccttcctg gggctgagac tgctggcagt cctcttctgg ttcatcgtct
     2821 cgacggcgct gacggcggtc tcgcccggcg cggtcggccg cgcgggcgcc cgcctacagc
     2881 tcaagttcgg gcgcgtcgtg ctcatcggcc tgctgggcgc ggtcgtggtg gggccgggcg
     2941 tcgccgcgtc gctacacttc ctgccgcccg tgctcgggct gctcgtaggc ttcacggcgc
     3001 tgctgctgct cctgctctcc tacctcttcg gccgagtcgt catacacgcc gtgacgggcc
     3061 gctggctaca gcgcgtgctg ctgcccgagg agaagcgctc ggagtcggtc gcgctcctcc
     3121 tcggcgccgc cttctgggcg ctcgtgctgg cgctcccata cgtctggccc gtgctcgtca
     3181 cggcgctcgt cgtcgtaagc ctcggcctcg cgctcacggc gcgctaccgc atgggctggc
     3241 gccgcgcctg aaataatttc gggttaaaga gaagagggtt gacgacggtg cggctgtcgt
     3301 caaccctctt cggtttctac tccgcggccc gcggtcacgg ggcggccgga tagaccatcg
     3361 tgagcgggtc ggggagaggt atgcggcgca gcgtgccgag cttggcgagc gagtgctgcg
     3421 ggcggtcggg gttgcccttc gtgatgtcgt caatgttgcc gacgacgagg atgaccagct
     3481 tgtcgggcgc caggtacttc tgcgcgacgc gctgcacgtc ctcggccgtg acggcgcgga
     3541 cgcgctcgcg gtacttgtcc cagtagtcgg cagggcgctt cgtgtactcg tcctgcgcga
     3601 acgtgccggc tatctgcgcc gcggtggcga agaagcgcgg gaagatttcg acggcggagt
     3661 tcttggccgt ctccaactcc tcgggggtca ccttcgacgt gcgcatccgg tttatctctt
     3721 ccatcacgat gtctatggcc tgtgcggtcg tcgggctctt cgactggaac gacgcctcga
     3781 acgtgccggg gtaatagacg ccgagcccgt agtccgaccc ggcgctgtat gcgaggccct
     3841 cgtcggagcg gacgcgcgac atgatgcgtg aggtgaagcc gccgccgccg agtatgtcgt
     3901 tcattatcgt caaggcgaaa gcgtccgggt tgtcgcgcat gtcgccgagg tggccgatgg
     3961 ttacgcggcc ctggttcacg tcggccttgt gcacggcata gacgccggcg accggcgtgt
     4021 gcgtcggctt aggcacgccg gggacggcct ccttgccgac gggccagccc tgcatggccg
     4081 cctcgagttt ggcgagcatc tgcttcgtgt cgaagtcgcc ggagacggcg aagatgaagt
     4141 tgccagggtg gtagtagcgc ttgtggaagg ccgccatgtc ttcgcgcgtg acggactcga
     4201 ttgacgcctt cgtcgagaac ttcgtcgaga agtgctcgcc gcgcatcaag cgctcccact
     4261 cgcgcgcctc tatggtcgag gtgttgtcgt tgcgccgctc catcgcctgt agcacctggc
     4321 tcttggcgag cttcagccgc tcctcgttaa aggccgggtt cttcagcatg tcgaagtaga
     4381 gggcgaggcc ctggtcaacg tccttcgcga ggacgttgag gccggcgccc ccctgcgtgg
     4441 cgccgatgga gctggagatg ttggcggcga ggaagtcggc ggcctcgtcg aactgctcgg
     4501 gcgtcttcga cgtggtgccg cccgcgcgca tctgcccgcc ggtcagggac gcgagcccct
     4561 ccttgccggc cgggtcgagg tacgagcccg tgcggacgat ggtcgagacg ttgacgagcg
     4621 gcaggtcgtg atcctctaca gcatagacga cggcgccgtt ggagagtacg tggcggtagt
     4681 tgtcgcgctt gggcggcgtg tagctcaggg gcgcgaactt gagctgggtc gggtgagccg
     4741 gtatgtcggc cgggcgctgc tgctgctgcg cctgcgcggc ggcgggcgcc gcgagcgaga
     4801 gcgtgaaaag tgtgaaggcg aggaacgccg aaagaagctt cctgttagtc attactgctt
     4861 acccccttcg agctgcttga tgcggtcttc cagcatcttc ttcatcacct gaaacgcctt
     4921 ctgcttatcg gccgggacgc tgccggcctg ctgctcgatc tgcgcgaggg cggccttgag
     4981 ctgttcgagc ttcgcctgcg cgagcatccc gcgcatgcgc ccgacctgcg ccttctcctc
     5041 gtcggagagc ccggcgagcg cggggtcttc cgctgcggcg gcggccgccc cttctgcctt
     5101 cttcgtgtag tagagggcga tggtgcggtt ctcgggcttg aagtaggtgt tgacgacgcg
     5161 ctgtatgtcg gccggcgtga cggcctggta gcgcgcgggg tctgtgttga ttgtctccca
     5221 gccgcgcgtg ttgtcgcgca gaaggagttg aaccatcagg ccgaagttgg actgaaggcc
     5281 gcggaaggtg ttcgcggcgt actggttctt gaccttctga agctcctgct cggggacgag
     5341 ctccttctga aggcgctcga tctccttgaa gagcgcctgc tctacgtcct cgggcttgcg
     5401 gccgggcttg gcgacgccgc taagctcgaa gtagccctcg tacttcaggc tgttctggtt
     5461 cgagccggcg ttgttggcga cctgctgttc gagcacgagc gacttgtaga ggcggcccgt
     5521 gcggccgttc agcaggctcg atagcacgga gagggcgaag ctgtcggggt ggccctcggc
     5581 gaccgtgtga tagcggacgc gcgcctgcgg gacggtctcg gcgtaggcga ccatgcgctt
     5641 ctcggcgagc tgcggcatct cgcgcgtccg caccggctcg ggctcgcgcg ggccgcgcgg
     5701 caggcggccg aagtagcgct tggcgagctc gacggcctgc gccggctcga agtcgccgac
     5761 gaggcaggcg gtcaggttgt tgggcgcgta gttgacggcg aagtattcga gggcctcctc
     5821 gcgcgtgatg ccttcgaggt cagagggcca gccgacgacg ggccagccgt agggcgagga
     5881 ctgccagaac attgactcgt acatctcgtt gaacttgccg gtgggcgtcg agtccgtccg
     5941 gaggcgccgc tcctcgtgaa caacgtcgcg ctcggagtag aactcccgga agacggggct
     6001 cttcagccgg tctgactcca tccagaacca aagctccagc ttgttggccg ggacgttgat
     6061 gaaatagacg gtgaagtcgt tcgaggtgcc ggcgttcatc ccagaggcgc cggccgtcgt
     6121 gtagatgcgg tcgaactcgt ccttgaccat cagctccttc tcgcgcttcg tcagctcctc
     6181 gaacttggcg aggagctgct tgtggcgctc ggagcggaac ttcgggtctt tcgggtcgga
     6241 gatttcgccg agcgtggctt tccggatcag gccctgctcc tcgcggcgaa tctcggcgcg
     6301 cacctgatcc atctctttta tgagcttcag attttcttcg atgttcttgg tgccgacggt
     6361 gtgcgttccc ttgaaca
//
LOCUS       DASPKR010000428         2243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_967383, whole genome shotgun sequence.
ACCESSION   DASPKR010000428 DASPKR010000000
VERSION     DASPKR010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_967383"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(68..1210)
                     /locus_tag="VD968_11580"
     CDS             complement(68..1210)
                     /locus_tag="VD968_11580"
                     /inference="COORDINATES: protein motif:HMM:NF042449.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase assembly
                     protein OpcA"
                     /protein_id="HYE15074.1"
                     /translation="METQASTVSLSALKGIDAARLEKELTAVWAGMSGEDGGVIRACA
                     LNLVVYSEGAEEHAHVVALLDEVIERHPCRAIVLAADRDAAEPRLDAYISTRCQLSSR
                     GAKRICGEQVTIEAGGAAVATASTAVAPLLVPDVPVFLWWRDIPHYDDRLFDRLSEMA
                     DRVVIDSAASDNPHADLLRLADVLDGRRGRLRLSDINWGRLTSWRALVAGFWDVAAYR
                     DSLTGIERVRLDYDPPDRSPHEVAPKALLAVGWLATSLGWEPEDGKVNDDEGGASFKL
                     NAGGRTVEVSLAPTEDAAGRDGMLTSLLIETAAGDEFCVRLRAGESKLETGARTAGGH
                     AVGRVLGYELRSEGQRLSAELEILTRDRVYERSVAFAARMLRSAGV"
     gene            complement(1226..>2243)
                     /gene="zwf"
                     /locus_tag="VD968_11585"
     CDS             complement(1226..>2243)
                     /gene="zwf"
                     /locus_tag="VD968_11585"
                     /inference="COORDINATES: protein motif:HMM:TIGR00871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HYE15075.1"
                     /translation="SLDSARELNRQILRHLDERQIYRIDHYLGKETVQNLLVFRFANG
                     IFEPMWNRQYVDHVQITNAETVGVEGRGGYYEKSGVVRDMIQNHVFQVLSLVAMEPPA
                     TLSAEDVRDEKIKAMHSARAFTPERVRAECVRGQYGAGSIGGKPVPGYREEQGVAPDS
                     TTETYAMITMWFDNWRWSGVPFYIRSGKRLAKRVTEIAIQFRAAPHQLFGDAMEHVAP
                     NQLVIRIQPDEGITMRVAAKVPGQLTRIRDVNMDFRYGASFGVQLAEAYERLILDCIL
                     GDSTLYARADMTERGWELVMPILDAWGEDRAGAGFPNYEAGSWGPQASFDVLERFGRK
                     WRRP"
BASE COUNT          337 a          764 c          750 g          392 t
ORIGIN      
        1 cttcgtaccg ccgatgtctc cggctattat catggtctct ctttagtgtc ccccgcttcc
       61 ctcttcctca aacacccgcc gacctgagca tgcgcgccgc gaaagcgacc gagcgctcgt
      121 aaacccgatc gcgcgtgaga atttcgagct cggcgctcag gcgctgaccc tcgctgcgca
      181 gttcgtatcc gagcactcgc ccgaccgcgt ggccgcccgc cgtcctcgcc cccgtctcta
      241 gcttcgactc gcccgcccgc agcctcacgc agaactcgtc gcccgcggcc gtctcgatca
      301 ggagggaggt tagcatgccg tctcgcccgg ccgcgtcctc ggtcggcgcg agcgagactt
      361 cgaccgtgcg gccgcccgcg ttgagcttga aagaagcgcc gccctcatca tcattaactt
      421 tgccgtcttc cggctcccac ccgagcgaag tggcgagcca gcccacggcg agcagcgcct
      481 tcggcgcgac ttcatgcggc gagcggtcgg gcgggtcgta atcgagccgc acgcgctcga
      541 tgcccgtgag cgagtcgcgg taggccgcaa cgtcccagaa gccagcgacg agcgcacgcc
      601 aggaggttag ccgcccccag ttgatgtcgc tcagccgcag acggcccctt cgcccgtcga
      661 gaacgtcggc gaggcgcagc aggtctgcgt gcggattgtc tgacgcggcc gagtctatca
      721 cgacgcggtc ggccatctcc gagaggcggt cgaagaggcg gtcgtcgtag tgcggtatgt
      781 cgcgccacca gaggaagacc ggcacgtccg gcaccagcag cggtgcgact gccgtcgagg
      841 ccgtcgcgac ggccgcgccg cccgcctcga ttgtcacctg ctccccgcag atgcgcttcg
      901 ccccgcgcga ggatagctgg cagcgcgtcg agatgtaggc gtcgaggcgc ggttcggccg
      961 catcgcggtc ggccgcgagc acgatggcgc ggcaggggtg gcgctcgatg acttcgtcga
     1021 gcagcgcgac gacgtgcgcg tgctcctccg ccccctccga atagacgacg aggttcagag
     1081 cgcaggcgcg aatcacgccg ccgtcttcgc ccgacatccc ggcccagacg gcagtcagtt
     1141 ccttctccag acgcgcggcg tctatgcctt taagcgccga gagcgaaacc gtgcttgctt
     1201 gcgtctccat acccgtcgaa tgatttcagg gccgccgcca cttgcggccg aagcgttcga
     1261 gcacgtcgaa ggaggcttgc ggcccccacg agccggcctc gtagttgggg aagcccgccc
     1321 cggcgcggtc ttcgccccac gcgtcgagga tgggcatgac gagctcccag ccgcgctcgg
     1381 tcatgtcggc gcgggcgtag agtgtggagt cgccgagtat gcagtcgagt atgagccgct
     1441 cgtaggcttc ggcgagctgg acgccgaacg aggcgccgta gcggaagtcc atgttcacgt
     1501 cgcgtatgcg cgtgagctgg cccggcactt tggcggcgac gcgcatggtt atcccctcgt
     1561 cgggctgtat gcgtatgact aactggttgg gcgcgacgtg ctccatcgcg tcgccgaaga
     1621 gctggtgcgg cgcggcgcgg aactgtattg cgatttcggt gacgcgcttc gcgagccgct
     1681 tgcccgagcg tatgtagaag gggacgcccg accagcgcca gttgtcgaac cacatcgtta
     1741 tcatggcgta ggtctctgtc gtcgagtcgg gcgcgacgcc ctgctcttcg cggtagccgg
     1801 ggacgggctt cccgccgatg gagccggccc cgtactgtcc gcgcacgcac tcggcgcgga
     1861 cgcgctccgg cgtgaaggcg cgggccgagt gcatggcctt aatcttttcg tcgcgcacgt
     1921 cctcggccga gagcgtggcg ggcggctcca tcgcgacgag ggagagcact tggaagacgt
     1981 ggttctggat catgtcgcgc acaacgcccg acttctcgta gtagccgccc cggccctcga
     2041 cgcccacggt ctcggcgttc gtaatctgca cgtggtcaac gtactgccgg ttccacatcg
     2101 gctcgaagat gccgttggcg aagcggaaga ccagaaggtt ctggacggtc tctttgccga
     2161 ggtagtggtc tatgcggtaa atctgccgct cgtcgaggtg ccggagaatc tgccggttca
     2221 gctcgcgggc gctgtcgagg ctc
//
LOCUS       DASPKR010000429         6775 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_191433, whole genome shotgun sequence.
ACCESSION   DASPKR010000429 DASPKR010000000
VERSION     DASPKR010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6775)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6775
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191433"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1115)
                     /locus_tag="VD968_11590"
     CDS             complement(<1..1115)
                     /locus_tag="VD968_11590"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE15076.1"
                     /translation="MRTPRTVSLRRVALVSFLIAAPALAWPGAAAARQQTGGPTPSSE
                     PKAEEQQQGTKPAAPAAAAPTTTPTADAAAQKGSPVPAANSRASATGAAAGPMVVPAV
                     IGEDQKPVIVHTDLITLTVTVTDTYGRFVTGLGKNAFTVLDDKVPQEITFFSDEDAPV
                     SLGVIFDVSGSMGGDKIMRAREALARFIDTSHSRDEYFLIGFNSRAQLLLDRTRDSDS
                     LMQKLTFVQTKGQTALYDACYLGVEKVTRGTHQKRAVLLISDGQDNSSRYTFSELRRL
                     LKESDVIIYAVGILSSHDDQTLGYGGRAILEELAGVSGGKAFFPSTGAEMNDTFERIA
                     LELRTQYSIGYRPTNFANDGKWHKLKIKVQPPRGFPRL"
     gene            1537..2772
                     /locus_tag="VD968_11595"
     CDS             1537..2772
                     /locus_tag="VD968_11595"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HYE15077.1"
                     /translation="MAEFICRLGTPAGEVVTRTVEAAGVGEARVRLESEGFRVFSVTP
                     PKTAGAAALTLGGKGGTTPRVKPGDFLLFNQQLAAIIRAGIPILQAVSMLRRRAASSR
                     LRAVLSDVEDKIRSGMALSQAFAAQGPIFPRIYTASILAGERSGALDDVLARYVAYMR
                     RGVEIRRKIRGALAYPLFLLAASMGMVAFLTAYVVPRMSSLFEGFNRELPAVTAVVIG
                     ISNFVAANLYWIVPALILGAVALFLWSKTPGGALAIDRLLLRLPIVSVLIKQLAVAQV
                     TRSLATLLAGGITLVESWEIAAESITNKELRARSSATLPMIREGRSFTDSLESAGWFP
                     LLALDMIGVGERSGSLREMLEEVAEFYDRESEVRLEQLTQVLEPAILLVMGGVVVTIL
                     LAIYLPIIQSISNIGLKGR"
     gene            2810..4543
                     /locus_tag="VD968_11600"
     CDS             2810..4543
                     /locus_tag="VD968_11600"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HYE15078.1"
                     /translation="MSTEKEAAIATTPPPARGVTAALNLPPHLDEHTPPEVRAACELA
                     RRYRLPYVDLLPPDGESPIDYSLLGELPVDLMVRHQFVPLRREGRRLHIAMADPTDLE
                     RLDEIASALHARIIPHVATAGAIEVVLRKGDATQRVLQEAASGFRISLVKETEQGEEV
                     LDLDRLATDSDMSPIIKLVDTIIYNAMESRASDIHIETGDTAVHVKYRIDGALYEKVE
                     PIDIAYHSTLISRIKVMSELDIAERRIPQDGRFRVRYKGRNVDFRVSIMPTIHGEDSV
                     IRILDKEQINEQFRNLTLDVVGFSARDIRDFRRYIAEPYGMVLVTGPTGSGKTTTLYA
                     ALNEIRNDEDKIITIEDPVEYQLHGITQIPVNEKKGLTFARGLRSILRHDPDKIMVGE
                     IRDNETAQIAIQSALTGHLVFTTVHANNVIDVIGRFLNMGVEPYNFVSSLNCVLAQRL
                     IRMLCHICKRPYDITDQELVESGLRPEEHRHRVFHMSVGCDACNHTGYRGRTAIHELL
                     NLSDNIREMIVARRPGSEVRRAAEAEGLRSLRESALEKVFEGLSTLHEINRVTFVEEV
                     KMNGDEMVMAR"
     gene            4823..>6775
                     /locus_tag="VD968_11605"
     CDS             4823..>6775
                     /locus_tag="VD968_11605"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretin N-terminal domain-containing protein"
                     /protein_id="HYE15079.1"
                     /translation="MKSFARARAVAALLLMFVLLASPVAVLAKKGEKNYKRGLQHEQA
                     QQWEKAAQEFALAVAANPSDTEYQLHYRRAIFNASQTFMTKGRALADQGDYVGAYNAF
                     RQAYGYDPVNELAAQEMARVLRLQREKEGKDPEMAPTSMRGANSVGPSATAGPARANG
                     ANGSAQDSAPPARSEQLQTIQYSGELEAFIRRLADELNLNVVFDQNFSQVKRTINVRW
                     KDITPARALDYIFMSQGLFFQKLDRRTILVADQSKRPQYQQLVLRTFYLYNIKPTDAR
                     QLLTGALPANAGRQPTFVENANTNSITVRDTPENIRTIEKLLRSVDKDRSEVVMEVSI
                     YEVSRTDLLQLGNQIGDATTLGNLGGVQPGSFLIGGARQLAAGTSGVFPLSTGVGLLI
                     PATRLSALSDKSNTRLIFSTQVHAFDDEKSETRIGEKVPVQTAAVYNGLTTAPSTGTP
                     NNNAAANNVFGNGYPVIQYEDTGLVLDFKPKVYPNQDVQVTMNIETKDAKGGTLTPTF
                     TQRKISGVARIPNGKTMMIASVAQDREEHGRTGLPLVGLIPILGRLFSTPTRNNRESD
                     VVITMTPRVLRAPSITPEDEVDRPTGSMQTPQAPSLEAMIIEAEREEQLARARQLPTN
                     QTIQLPAQPGEEVSFVPAPKPFADAAA"
BASE COUNT         1181 a         2315 c         2177 g         1102 t
ORIGIN      
        1 aggcgcggga agccgcgcgg cggctgcacc tttatcttca gcttgtgcca cttgccgtcg
       61 ttggcgaagt tcgtggggcg gtagccgatg gagtactgcg tgcgaagctc gagcgctatg
      121 cgctcgaagg tgtcgttcat ctcggcgccg gtcgatggga agaacgcctt gccgcccgag
      181 acgcccgcga gctcttcgag tatggcgcgg ccgccgtagc cgagcgtctg gtcgtcgtgg
      241 ctgctgagta tgccgacggc gtagatgatc acgtcggact ctttaagcag cctgcggagc
      301 tccgagaagg tgtagcgcga gctgttgtcc tgcccgtccg atatgagcag gactgcgcgc
      361 ttctggtgcg tgccgcgcgt gaccttctcg acgccgaggt agcaggcgtc gtagagcgcc
      421 gtctgcccct tcgtctgcac gaaggtgagc ttctgcatga gagagtcgct gtcgcgcgtg
      481 cggtccagga ggagctgcgc gcggctgttg aagcctatca ggaaatactc gtcgcgcgag
      541 tggctcgtgt ctatgaagcg ggcgagggcc tcgcgcgcgc gcatgatctt gtcgccgccc
      601 atcgagcccg acacgtcgaa gatgacgccc aaagagacgg gcgcgtcctc gtccgagaag
      661 aaggttatct cctgcggcac cttgtcgtcc aagaccgtga aggcgttctt gccgaggcca
      721 gtgacgaagc gcccgtaggt gtcagtgacg gtgacggtca gggttatcag gtcggtgtgg
      781 acgatgacgg gcttctggtc ttcgcctatg actgcgggga cgaccatcgg gccggccgcc
      841 gcgcccgtgg ccgaggcgcg cgagttcgcc gccgggaccg gcgagccctt ctgcgcggcc
      901 gcatcggccg tcggcgtcgt tgtaggcgcc gccgcggctg gggcggcggg cttcgtgccc
      961 tgctgctgct cttcggcttt cggctcggac gaaggggtgg ggccgcccgt ctgctgccgg
     1021 gccgcggcgg cgcccggcca ggcaagcgcg ggcgcggcta tgaggaaaga gacgagcgct
     1081 actcttcgga gagacaccgt cctcggcgtt ctcattttaa ccctcctgac tctgtttggg
     1141 cgggctcaga gggaaggggc cggcgcgggc ctcgctgatt ttgacagccg gcccgtgtgc
     1201 cttgcggcgg ccgcccggcc ggcttttcgg cctatgccgc cgggcgcgcc cttcctgctt
     1261 gtccgctgaa gcgcaaacgg aagatgggga gacatcctct ttccttccgg cgcattgtag
     1321 aacgcgccgc gcgcccggcg caacaaacat ctgtgcccca actttgtggc gagattatct
     1381 ccgcgaaact tcgcggccgt cagcgcgtga aagtctgtgg cggtgggccg gcgggcgcgc
     1441 ggcgtgctat aattcggcgt caaacggggg ccggattcct cccgccggaa gaccgaagcg
     1501 cccccgtaaa accccctttt tagaagcgga aagagaatgg ccgagttcat ctgtcggttg
     1561 gggacgcccg cgggcgaggt cgtgacgcgc accgtcgagg cggcgggcgt cggcgaggcg
     1621 cgcgtgcgcc tcgagtcgga gggcttccgc gtcttctccg tcacgccccc gaagactgcc
     1681 ggggcggccg ccctcacgct cggcggcaag ggcggcacca ccccgcgggt aaagcccggc
     1741 gacttcctcc tcttcaacca gcagctcgca gccatcatac gggccggcat ccccatattg
     1801 caggccgtct cgatgcttcg ccggcgtgcc gcaagctcac gcctccgggc cgtgctctca
     1861 gacgtggagg ataagattcg ctcggggatg gcgctctcgc aggcgttcgc ggcgcagggg
     1921 ccgattttcc cgcgcatcta cacggcctcg atcctcgcgg gcgagcgctc cggcgcgctc
     1981 gacgacgtgc tggcgcgcta cgtcgcctac atgcggcgcg gcgtcgagat aaggcggaag
     2041 attcgcgggg cgctcgccta cccgctcttc ctgcttgctg cctcgatggg gatggtggcg
     2101 ttccttacgg cctacgtcgt gccgcgaatg tcttcgctct tcgagggctt caaccgcgag
     2161 ctgccggccg tgacggccgt cgtcataggc atctcgaact tcgtcgcggc gaacctctac
     2221 tggatagtcc ccgccctaat cctcggcgcc gtggcgctct tcctctggtc gaagacgccg
     2281 ggcggcgcgc tcgccataga ccgcctgctg ctcaggctcc ccatcgtgag cgtgctgata
     2341 aaacagttgg ccgtggcgca ggtgaccagg agcctcgcca cgctccttgc gggcggcatc
     2401 acgctcgtcg agtcttggga gatagcggcc gagtccatca cgaacaagga gctgcgtgcg
     2461 cgaagctccg cgacgctgcc gatgatacgc gaggggcgct cgttcacgga tagtttggag
     2521 tcggccggct ggttccccct gctcgccctg gacatgattg gcgtgggcga gcgctccggg
     2581 agcctccgcg agatgctgga ggaggtcgcc gagttctacg accgcgagtc cgaggtgcgg
     2641 ctcgaacagt tgacgcaggt cttggagcct gccatccttc tggtgatggg cggcgtggtc
     2701 gtcacgatcc tgctcgccat ctatctgccg atcatccagt ccatttcgaa cataggcctg
     2761 aagggccgct aggcaatccc ccgccgcgtt taacgcatcg aacagactca tgagcacgga
     2821 aaaagaggcc gccattgcca cgacgccccc gcccgcccgc ggcgtcacgg ccgcgctgaa
     2881 cctgccgccg cacctcgacg agcacacacc gcccgaggtg cgcgccgcct gcgagctcgc
     2941 gcgccgctac cggctcccct acgttgacct gctcccgccc gacggcgagt cgccgattga
     3001 ctattcgctc ctcggcgagc tgcccgttga cctgatggtg cgccaccagt tcgtgcccct
     3061 gcgccgcgag ggccgccgcc tccacatcgc gatggccgac ccgaccgacc tggagcgcct
     3121 ggacgagata gcctcggcgc ttcacgcgcg cataatcccg cacgtcgcga cggccggcgc
     3181 gatagaggtg gttctgagga agggcgacgc cacgcagcga gtgcttcagg aggcggcctc
     3241 cggcttccgc atctcgctcg tcaaggagac cgagcagggc gaggaggtct tagacctcga
     3301 ccggctggcg accgacagcg acatgtcgcc catcatcaag ctggttgaca ccatcatcta
     3361 caacgcgatg gagtcgcgcg cctccgacat acacatcgag acgggcgaca cggccgtcca
     3421 cgtcaagtac cgcatagacg gcgcgctcta cgagaaggtc gagcccatag acatcgccta
     3481 ccactcgacg ctcatctcgc gcataaaggt catgtcggag ctcgacatcg ccgagcggcg
     3541 catcccgcag gacggccgct tccgcgtgcg ctacaagggc cggaacgttg acttccgcgt
     3601 ctccatcatg ccgaccatcc acggcgaaga ctccgtcata cgtattctgg acaaggagca
     3661 gataaacgag cagttccgca acctcacgct cgacgtggtg ggcttttccg cccgcgacat
     3721 acgcgacttc cgccgctaca tcgccgagcc ctacggcatg gttctcgtca cgggccctac
     3781 ggggtcgggc aagacgacca ccctgtacgc ggcgctgaac gagattcgga acgatgaaga
     3841 caagataatc accatcgaag accccgtgga gtaccagctc cacggcatca cgcagatacc
     3901 cgtcaacgag aagaagggcc tgacgttcgc gcgcggcctg cgctcgatcc ttcgccacga
     3961 ccccgacaag ataatggtcg gcgagatacg cgacaacgag acggcgcaga tagccatcca
     4021 gtcggcgctg acgggccacc tggtgttcac gaccgtccac gccaacaacg tcattgacgt
     4081 catcggccgc ttcctgaaca tgggggtgga gccctacaac ttcgtctcgt ctctgaactg
     4141 cgtgctggcg cagcggctca tcagaatgct ctgccacatc tgcaagcgcc cctacgacat
     4201 aaccgaccag gagcttgtcg agtcgggcct caggcccgag gagcaccgcc accgcgtctt
     4261 ccacatgagc gtcgggtgcg acgcctgcaa tcacacgggc taccgcggtc ggacggccat
     4321 acatgaattg ctgaacctct cggacaacat acgcgagatg atcgtggcgc gccgccccgg
     4381 ctccgaggtg cgccgcgcgg ccgaggcgga ggggctgcgc tctctgcgcg agtcggcgct
     4441 cgagaaggtc ttcgaggggc tctccacgct gcacgagata aaccgcgtca cgttcgtcga
     4501 agaggtgaag atgaacggcg acgagatggt gatggcgaga tagaaggcgg aaggccgcag
     4561 gcagtaggcg gccttaagag ccttgccggg agccgcgccg cccagggcgc aatgttttaa
     4621 ccgccttctg ctctccgcct ccttcccgac ttgtgagcgc gtctttaagg aactattatt
     4681 acggccccgg cgtgtaaaca gaccgtgggg cgccgcgcag acaacaggct cctccccgac
     4741 gaccaggttt caccggggcc ggccgctcgc acgggccgcc cggtcttgag cggacggcaa
     4801 taatcaagca gtgaggttcg tgatgaaatc ctttgctcgt gcgcgcgcgg tcgcggcgct
     4861 cctcctgatg ttcgtgctcc tggcctcgcc ggtcgcggtg ctggctaaga agggcgagaa
     4921 gaactacaag cgcggccttc agcacgagca ggcgcagcag tgggagaagg cggcgcagga
     4981 gttcgcgctg gcggtcgcgg ccaacccctc ggacaccgaa taccagctcc actaccgccg
     5041 cgccatcttc aacgcctcgc agaccttcat gacgaagggg cgcgctctcg ccgaccaggg
     5101 cgactacgtg ggggcctaca acgccttccg ccaggcttac ggctacgacc ccgtgaacga
     5161 gctggccgcg caggagatgg cgcgcgtgct gcgcttgcag cgcgagaagg agggcaaaga
     5221 cccggagatg gcgccgacct ccatgcgcgg cgccaacagc gtcggcccgt cggcgaccgc
     5281 ggggccggcg cgcgctaacg gcgcgaacgg ctcggcgcag gactcggcgc cgcccgcgcg
     5341 ctccgagcag cttcagacca tacagtacag cggcgagctc gaagccttca tccgccgcct
     5401 ggccgacgag ctgaacctca acgtcgtctt cgaccagaac ttctcgcagg tcaagcgcac
     5461 catcaacgtc cgctggaagg acataacgcc ggcgcgcgcc ctcgactaca tcttcatgtc
     5521 gcaggggctc ttcttccaga agctcgaccg ccgcaccata ctcgtcgccg accagtcgaa
     5581 gcgaccgcag taccagcagc tcgtactgcg caccttctac ctctacaaca tcaagccgac
     5641 ggacgcgcgc cagctcttga ctggcgcgct ccccgcgaac gccggccgcc agccgacctt
     5701 cgtcgagaac gccaacacca actcgataac ggttcgcgac acgcccgaga acatacgcac
     5761 catcgagaag ctgctccgaa gcgttgacaa ggatcgctcc gaggttgtca tggaggtctc
     5821 catctacgag gtatcgcgca cggacttgct gcaactcggc aaccagatag gcgacgcgac
     5881 cacgctcggc aacctcggcg gcgtgcagcc cggctcgttc ctcattggcg gcgcgcgcca
     5941 gctagccgcg gggacgagcg gtgtgttccc gctctcgacc ggcgtcggcc ttctcatccc
     6001 ggcgactcgc ctctcggccc tgtccgacaa gagcaacacc cgcctcatct tctcgacgca
     6061 ggttcacgcc ttcgacgacg agaagagcga gacgcgcatc ggcgagaagg ttcccgtaca
     6121 gaccgccgcg gtctataacg gcctgacgac ggcgccgtcc acggggacgc ccaacaacaa
     6181 cgccgccgcc aacaacgtct tcggcaacgg ctaccccgtc atccagtacg aggacacggg
     6241 cctcgtgctc gacttcaagc cgaaggtcta tccgaaccag gacgtgcagg tcacgatgaa
     6301 catcgagacc aaagacgcga agggcggcac gctcactccg accttcacgc agcggaagat
     6361 ttccggcgtg gcgcgcatcc cgaacggcaa gaccatgatg atcgccagcg tcgcgcagga
     6421 tcgcgaggag cacgggcgca cggggctgcc gctcgtcggg ctcataccca tcctcggccg
     6481 cctgttctcg acgcctacgc gcaacaaccg cgagtcggac gtggtgataa cgatgacgcc
     6541 gcgcgtcctg cgcgcgccca gcatcacgcc cgaggacgag gttgacaggc ccacgggctc
     6601 gatgcagacg ccgcaggccc cctcgctcga agccatgatc atcgaggccg agcgcgagga
     6661 gcagctcgcg cgcgcgcgcc agctcccgac caaccagacc atacaactgc ccgcgcagcc
     6721 cggcgaggaa gtgagcttcg tccccgcgcc caagccgttc gccgacgcgg ccgcc
//
LOCUS       DASPKR010000430         3434 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1612920, whole genome shotgun sequence.
ACCESSION   DASPKR010000430 DASPKR010000000
VERSION     DASPKR010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3434)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3434
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1612920"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1643
                     /gene="asnB"
                     /locus_tag="VD968_11610"
     CDS             <1..1643
                     /gene="asnB"
                     /locus_tag="VD968_11610"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HYE15080.1"
                     /translation="RGQTGWATQSDTEVVLKSLASEGERAVHGWNGMFAVAAWDARRK
                     RLTLIRDRMGVKPLYYFWDGRTLLFASEIKALLASGLIERRVNRQAVWDYLTYRYVPE
                     PETAWEGVRKLPPGHLLRWEAGGEPEIVRYWETDAVADEREERTEDEVDREFAALFLD
                     AVNLRLVASDVPVGVFLSGGLDSSAIAAAAVELGHRNFHTFSVGFEDGGEFSELAYAR
                     EVAAHVGAQYHEVVVNQSQFLDALPEVVFAADEPLADLTLVPLLAVSRLARRDVKVVL
                     SGEGSDEILAGYNLDRMELEWGRVRALQRVPRPLLASGAALSRLALPERYGRRARRVT
                     EVPLADWNRQSRPHITRYFGQDEKTALWPSAAACADSERVLAAQYAAARSEDPLQQLL
                     SVYQKSWLVEDLLMKADKMSMAASLEARTPFLDYRLVEWANRQPNWVKVRRTGRGQYR
                     TKDVLRRFCARRLPPGILTRPKRGFPVPAYRWLQDGLSGWASGVLLGAESRLARAFDR
                     RAVEGVLASAREGAGDAPHRAWLLLVLELWLRAWDVEL"
     regulatory      1787..1889
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01051"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-GMP riboswitch class I; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="cyclic di-GMP"
                     /db_xref="RFAM:RF01051"
     regulatory      2231..2319
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01051"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-GMP riboswitch class I; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="cyclic di-GMP"
                     /db_xref="RFAM:RF01051"
     gene            2331..>3434
                     /locus_tag="VD968_11615"
     CDS             2331..>3434
                     /locus_tag="VD968_11615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15081.1"
                     /translation="MSIKRSAALSQKSPSSFLSTLRTLLLFALLTATAHATAAAATIA
                     VPAGGDFQAALYAAQAGDIITLEAGATYVGPFTLPNKTGTGTDADWITIRTSAPDSAL
                     PAPGERITPAYAPLMPKLLSPGRGEAALQTEPGAHHYRFIGVEFGRVNSSAVVYDLVK
                     LGDGSPAQNTPEEVPHHLTLDRCYIHGDDGDLKRGISLQSAHTEIVGCYVSEFHVRGQ
                     DTQAVAGWNGPGPYRIVNNYLEGAGENLIFGGARSAVPGQTPSDILISRNHISKPASW
                     RGRWTVKNLLELKHARRVRIEGNLLEHCWLDAQQGYAVLFTPRPSDSGDWAAVEDVEF
                     VNNVVRRVAAGVHVSGQDDLFSPAPKSRRLRRVR"
BASE COUNT          560 a         1216 c         1139 g          519 t
ORIGIN      
        1 cgcgcgggca gacgggctgg gcgacccaga gcgacacgga agtcgtcttg aagagcctgg
       61 cgtcggaggg cgagcgcgcc gtccacggct ggaacggcat gttcgcagtc gccgcgtggg
      121 acgcgcgccg caagcgcctg acgctcatac gcgaccgcat gggcgtcaag cccctctatt
      181 acttctggga cggccgcacg ctcctcttcg cctcggagat aaaggcgctg ttggcttccg
      241 gcctcatcga acgtcgcgtc aaccgacagg ccgtctggga ctacctgacc taccgctacg
      301 tgcctgagcc ggagaccgcg tgggagggtg tgcggaagct cccgccgggc cacctgcttc
      361 ggtgggaggc gggcggggag cccgagatcg tgcgctactg ggagaccgac gccgtagcgg
      421 acgagcgaga ggagcgcacc gaagacgagg ttgaccgcga gttcgccgcg ctcttcctcg
      481 acgccgtgaa cctgcgcctc gtcgcctcgg acgttcccgt gggggttttc ctgagcggcg
      541 gcctggattc gagcgcgatt gcggccgccg cggtcgagct gggccacagg aactttcaca
      601 ccttttcggt cggcttcgag gatggcggcg agttctccga gctcgcttac gcgcgcgagg
      661 tcgccgccca cgtcggcgcg cagtaccacg aggtcgtcgt caaccagagt cagttcctcg
      721 acgcgctccc cgaggtcgtc ttcgcggccg acgagcctct ggccgatttg accctggtgc
      781 ctctgctcgc cgtctcgcgc ctcgcgcgcc gcgacgttaa ggtcgtgctc tcgggcgagg
      841 ggagcgacga gatactcgcc ggctacaacc tcgaccgaat ggagctagag tgggggcgcg
      901 tgcgcgcgct gcaacgcgtc ccgcgcccgc tgcttgcgtc gggcgccgcg ctctcgcggc
      961 tcgccctgcc ggaaaggtac gggcgccgcg cgcggcgcgt gacggaagtc ccgctcgccg
     1021 actggaaccg ccaatcgcgc ccgcacatca cgcgctactt cgggcaggac gaaaagaccg
     1081 ccctctggcc ttcggcagcc gcatgcgccg actccgagcg cgtgctggcg gcgcagtacg
     1141 cggcggcgcg ctccgaagac cccttgcagc agctactctc cgtctatcaa aagtcctggc
     1201 tcgtcgaaga ccttctgatg aaggccgaca agatgagcat ggccgcctct ctcgaagcgc
     1261 gcacgccctt cctcgattac cgtctggtcg aatgggcgaa ccgccagccg aactgggtca
     1321 aggtgaggcg cacggggcgg ggccagtacc ggacgaaaga cgtgctgcgc cgcttctgcg
     1381 cgcggcgcct gcccccgggc atactcacgc ggccgaagag gggattcccc gtgccggcct
     1441 accgctggct tcaggacggg ctctcgggct gggcctctgg cgtgcttctc ggcgcggaga
     1501 gccggctcgc tcgcgccttc gaccgaaggg cggtggaggg cgtgctggcg tcggcgcgag
     1561 agggcgcggg agacgcgccg caccgcgcct ggctgctgct ggtccttgag ctttggctgc
     1621 gcgcctggga tgtggaattg tagccgcgcg gttccaggaa acggcccgga aagagggcct
     1681 gggcgatgcc gtaaaatgtg attgacaagc gcccggccga accgctacaa atgattgtgt
     1741 ggctgctttc cccgagcagc acgttctttc gcaaggcgac gattgtacac gataagggca
     1801 aacctgccgc gaggcaggga cgcaaagccg tgagtctccg cccgcgcgcc cgcccggggc
     1861 gccgaagcgg agattgtctg gttgccgaag gcagtcggag ataaccgcga ctgacgggca
     1921 actgtgccgg ccgcgcgccc ttagccgcgc acaagccggc gcccgaagcc ccccgacaca
     1981 gtcgcggacg agggccgctc caagcgcttc tttcaaaccg cccttctctt aaaaacgacg
     2041 cgcgacgcgg ccgctctccc cgaacgctct ccgctcccta gaaaaccaga cgacacgact
     2101 cttcagcccg cccggcctac gcctctcaaa aaggcgtgag gcgcgcccgc gtcttcgtca
     2161 gcacctcgaa cgcctcgccg cccctccggc cttgaagaga ccggcactgg gccgcgccgg
     2221 cacggccgtc accgactaaa ggcacacccg cagcgatgcg gggtcgcaaa gccaggagtc
     2281 tcgccccacg cctttcggcg agatcgtccg gttaccgaag tgaggttttg atgtccatca
     2341 agcggtcagc cgctctttca caaaagagcc cgtcctcctt cctttcaacc ctacgcactc
     2401 tcctcctctt cgccctcctg accgcgaccg cgcacgctac ggccgccgcc gcgaccatag
     2461 cagttccggc cggaggcgac ttccaggccg cgctctacgc ggcccaggcg ggcgacatca
     2521 tcacgctaga ggcgggcgct acttacgtag gccccttcac gctgcctaac aagacgggga
     2581 cagggacgga cgccgactgg ataacgatac gcacctcggc cccagactcc gcgctgcccg
     2641 cgccgggcga gcgcatcacg ccggcatacg cgccgctcat gccgaagctg ctctcgccgg
     2701 gccgcggcga ggccgcgctc cagacagagc ccggcgcgca ccactaccgc ttcataggcg
     2761 tggagttcgg ccgggtcaat tcgtcggcgg tcgtgtatga ccttgtgaag ctgggcgacg
     2821 gtagccctgc gcagaacacg cccgaggagg tgccgcacca cctcaccctc gaccgctgct
     2881 acatccacgg cgacgacggc gacctcaagc gcggcatctc cttgcagagc gcccacaccg
     2941 agatagtcgg ctgctacgtc tccgagttcc acgttcgcgg gcaggacact caggcggtgg
     3001 cgggctggaa cggccccggc ccctaccgca tagtgaacaa ctacctggag ggcgccggcg
     3061 agaacctcat attcggcggc gcccgctcgg ccgtgccggg ccagacgccc tccgacatac
     3121 tcatctcgcg caaccacatc tcgaagccgg cctcgtggcg cggccgctgg accgtcaaga
     3181 acctgctcga gctcaagcac gcccggaggg tgaggataga ggggaacctc ctcgagcact
     3241 gctggctcga cgcccagcag ggctacgccg tgctcttcac gccgcggccg tcggacagcg
     3301 gcgactgggc ggcggtcgag gacgtcgagt tcgtcaacaa cgtcgtgcgc agagtggccg
     3361 ccggcgtcca cgtctcgggc caggacgacc tgttctcgcc ggcgccgaag tcgaggaggc
     3421 tgcgcagggt cagg
//
LOCUS       DASPKR010000431         9371 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_191668, whole genome shotgun sequence.
ACCESSION   DASPKR010000431 DASPKR010000000
VERSION     DASPKR010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9371)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9371
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191668"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            4..153
                     /locus_tag="VD968_11620"
     CDS             4..153
                     /locus_tag="VD968_11620"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYE15082.1"
                     /translation="MWGQQYYGDTRTLDVHIRRLRQKLGDCGGCIETVIGVGYRFLGC
                     AGVEE"
     gene            250..1566
                     /locus_tag="VD968_11625"
     CDS             250..1566
                     /locus_tag="VD968_11625"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE15083.1"
                     /translation="MTLRTAIALATAAALLAGWLAIYSASPRTAWGLLAAAAVGAAAA
                     RFYPSALADRREGGRVGAAAPGGAGAERRDGAGGAPGDVPAAALLKVTMDSMREGVVV
                     TDNAMRVVALNNSARDAFRRGGSDALSPGRLSDLTRNPAIYSAFAAAVSRGVNAHVKV
                     EIEGPGGRRIYDLHVTPLRQREVIYGSDVRGAIGVFFDITELERLERVRQEFLSNVSH
                     ELRTPLTAIVTFVETLEGGALEHPEDARRFVSIIGRNAARMRTLIEDIMELSAIESGA
                     SKVEARPVQLSPIVQEALRSLAAKADACGVSLSNEVLPEATVHADPRRLEQMLLNLID
                     NAIKFSRPGGTVTISHEPGEGDLVSVKDTGEGIPPEHLPRIFERFYRVDRARSRELGG
                     TGLGLAIVKHLARAHGGEVRVRSAPGEGSTFTIELPREPRPSTSPA"
     gene            1927..3093
                     /locus_tag="VD968_11630"
     CDS             1927..3093
                     /locus_tag="VD968_11630"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF006050.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HYE15084.1"
                     /translation="MNVTHLECAACGARHEARVLHNLCRECGKPLLVRYDLERAARTL
                     TKESLKGRRSDLWRYMEVLPVGREEGVVSLGEGWTPLLDARRLGASLGLGRLYVKDES
                     QNPTQSFKARGMSAAVSMAKELGARKVAVPSAGNAAGALAAYAARAGLEAHIFMPRDT
                     PRANVIECEQAGASVTIIDGLITDCGAEVARRKEAEGWFDVSTLKEPYRVEGKKTLGY
                     ELAEQMGWELPDWVIYPTGGGTGLIGMWKAFDEMERMGWIGPKRPRMVTVQPTGCAPI
                     VRAFEEGKRTAEEFENAATVASGLRVPKAIGDFLILDALRASKGAAIAVSDEELLAAV
                     REIGAAEGIFVAPEGAACLPALRRLVERGDVKPHESVVLFNTGAGVKYMEAFGG"
     gene            3126..4508
                     /locus_tag="VD968_11635"
     CDS             3126..4508
                     /locus_tag="VD968_11635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15085.1"
                     /translation="MKIKAQLFKFTFAAVLASAAAAAAQAQAPKSVPAGGEKAAAAAS
                     SSWASLDRKRFDELRANGFAALYNLDYEGARRTFNEMAKEFPDHPAGSQFLAAGLWLK
                     TLNESRRLQASLYNTEGFYKEEEDKADPKVLAEFRALTRKAEALCELRLAADPKDTEA
                     LYYLGAVEGLKAAWGGMVERSFRSALRNGNDSVGHHRALVKLDPTFHDAKITIGMYDY
                     VVGGLPLPVKILAAIGGFRGSKKRGLATLEQVAREGKWARDDAKSLLIALLKRERRFR
                     EAYQHASDLAAKYPRNYIFKMEAADALVSQAEVDRATNPEAAKKTEDEAFAVFESLLA
                     ATRGAQSQGPRPPLDMVHFSYGEALFVAGHAERAAKEFLAAAALPGVEQTMLTRSRLR
                     AAQALDLAGKREEALTHYKAVLARPNVFDSHEDAKRGLKEPYKHPRKVAETAGDSEDE
                     GGAASTAKAN"
     gene            4538..5893
                     /locus_tag="VD968_11640"
     CDS             4538..5893
                     /locus_tag="VD968_11640"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HYE15086.1"
                     /translation="MDDACASNEVMETLAARAEEAERLGVAPGAGQSPTRPRRLLICL
                     DGVPFEVIRALKSRGMFDNFREPARLLSPFPTLTNVALAQMLGATPPQGYESLYFDRD
                     SRELRGGVSKYIGRRTPDKAPSSYMEELDYQEPLPFEFLIYVATDAVWQADMRRFRER
                     FLSAPPTRDFFGFLKATDGLLHIAGPERLSVAMRSLDRILRRLQGECGSETEIVVFSD
                     HGMNLVENRRVHLQSHLRSAGYDVLGSMRARMRGSRQVAAPAFGLCGYVALYCGEEVD
                     RARLARDLTGLEGVDFSVHRDDDGETVVVTGVRGRALVAREQRGASAAYRYEQVDGDP
                     LGLAAVSQDLREEGVMDGRGFAPDEAWLSRTWDAERPDALANVFESVTSPRVRHTADV
                     LVSLQDGYYYGAPAFSRMVRLLATHGNALRPSSQAFLMSTHRSFPDYTRACEARPLLR
                     G"
     gene            5972..6781
                     /locus_tag="VD968_11645"
     CDS             5972..6781
                     /locus_tag="VD968_11645"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE15087.1"
                     /translation="MSSDAAAGAYAIETFDLVRRFGDFLAVDGVSLRVRAGSFFGFLG
                     PNGAGKSTTIKMLTGLLAPTSGRVVVLGRDIAREPLEVKRRIGVVPEDLNLFERLTGA
                     EMLSFTGRMYGLGRDETARRGRELLELMELDDEPGKLVVEYSHGMKKKLSLACALIHR
                     PEILFLDEPFEGVDAIASRTLKGLLSRLTSRGMTVFLTSHVLEIVERLCSDIAIISEG
                     RLVASGPLEELRRGVPVEGEGRGPQLSLEDYFIKVVGGAPEAGAGALSWLG"
     gene            complement(6869..>9371)
                     /locus_tag="VD968_11650"
     CDS             complement(6869..>9371)
                     /locus_tag="VD968_11650"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HYE15088.1"
                     /translation="NVIDGVANRGMTLNMAEDNSGNNRLNVTVTGNNVEADNPSGFEG
                     IFVQGGTLTGNDGIICADISSNTAVSAAADGLRVRQRMETTIQLPGYTGANNNNAAVV
                     AYLQARNPSLGDTVSATNSVGVAPPNGPGGGFVNTPGPGNPCAQPTLPSAPLRLEFAA
                     AGADRGPSKVAVEEAAQGGVTSRPFVSFPQNRQQKSPALSVAPQRPAQKQSGAAAKAG
                     KAAVKAPKGGDTPTAPNGRKGVTRRLKPVISAAGETINVKIGTLRSGDSVEITFQATV
                     ADPYTGGPNVSNQGTVTADNGISVQTDDPGDATSSSDPTLTPVDALKIFVMDATAAEP
                     ATGTTDMVFTVTLSAPAPGLVSVSFTTEEEPAGPGKAVAGCGDYTTSTGVLNFTTGQQ
                     VQSINVPVCSDADNAEPDETFLVKLSGATGATIADGTATGTITATNPPGAILISELRT
                     SGPGGSADDFVEIYNNSDTKHIVDSADDTGYGLFKMGAGCGDTPVLIGTISEGTEIDP
                     RGHFLFVGTQYSLADYGGTDATDGDQTMSSDIEDNRNVAIFKTADPAALSSVNRLDAV
                     GFGINTGTNCNLLREGATLAPVAGNFPGGVTTQYTFFRSMCSFVGGVGCTVVGTSKDT
                     NVNASDFLFADVEATDMSAFGAGQRLGAPGPEEKSSPLRKNSGIDVLPLDRSQPLSAG
                     PNRSRFPQAQDPGGTHGTLVVRRRIENNTSSTVTRLRFRIVEITTFPPAPGFADLRAR
                     DSTVPEMVSSIGDAETCADTSVPPGTPNPCTVEVMPTVVEQPPVQPNGGGFNSTMTVT
                     LVPGIAPGDSINVRFRLGLEQTGTFRFYMIVEALP"
BASE COUNT         1427 a         3136 c         3314 g         1494 t
ORIGIN      
        1 gaggtgtggg gacagcagta ctacggcgac acgcgcacgc tcgacgtgca catccgccgc
       61 ctccgccaga agctgggcga ctgcggcggc tgcatcgaga ccgtaatagg cgtcggctac
      121 cgcttcctcg gctgcgcggg cgtggaagag taacgccggg cgtcgtgaga gccccgccaa
      181 cgttgggccg gtttttggcc cccggcgtag gccaaagacg taagcggcgg ccttgccact
      241 ccgtccacaa tgaccctcag aaccgccata gcactcgcga ccgccgccgc gctcttggcc
      301 gggtggctcg ccatctacag tgcgagcccc cgaacggcgt ggggcttact ggcggccgcc
      361 gcagtgggcg ccgcggccgc gcgcttctac ccgtcggcgc tggcagaccg ccgcgaaggg
      421 ggccgcgtgg gcgcggccgc gccggggggc gccggcgcgg aaaggcgtga cggcgcggga
      481 ggggcgccgg gagacgtgcc cgcggccgcc ttacttaaag taacgatgga cagcatgcgc
      541 gagggtgtcg tcgtcaccga caacgccatg cgcgtcgtgg cgctgaacaa ctcggcccgc
      601 gacgccttcc gccgaggcgg cagcgacgcg ctgagccccg gccgcctgag tgaccttacc
      661 cgcaaccccg ccatctactc cgccttcgcc gcggcggtgt cccgtggggt gaacgcccac
      721 gtcaaagtcg agatcgaagg gcccgggggg cggcgcatct acgacctgca cgtcacgccg
      781 ctgcggcagc gtgaggtcat ctacggcagc gacgtgcgcg gggcaatcgg ggtcttcttt
      841 gacatcacgg agctggagcg gcttgagcgc gtccggcagg agttcctctc gaacgtgagc
      901 cacgagctgc gcacgccgct cacggccatc gtcaccttcg tcgagacgct cgagggaggc
      961 gcgctcgaac acccggaaga cgcccgccgt ttcgtctcca tcatcgggcg gaacgccgcc
     1021 cgcatgcgca cactcattga agacatcatg gagctttcgg ccatcgagtc gggcgcgtcg
     1081 aaggtggagg cacggcccgt gcagctctcc ccgatagtcc aggaggccct gcgctcgctg
     1141 gcggcgaagg ccgacgcctg cggcgtctca ctctccaacg aggtcttgcc ggaggcgacc
     1201 gtccacgccg acccgcggcg gctcgaacag atgctcctca acctgataga taatgccatc
     1261 aagttcagcc ggcccggcgg cacagtgacg atcagccacg agccggggga gggcgatttg
     1321 gtgagcgtta aagacacggg ggagggcata cccccggagc acctgccgcg catattcgag
     1381 cgcttctatc gcgttgaccg cgctcgctcc cgcgaactag gcgggaccgg cctggggctc
     1441 gccatcgtca agcacctggc gcgcgcgcac ggcggcgagg tccgcgtgcg ctccgcgccc
     1501 ggcgagggct cgaccttcac catcgaactc ccgcgagagc cccgtcccag cacgagcccg
     1561 gcgtgaaggc cggagacttg tcgtgaggta tcgccctgcc cgccgctaga cgctcgggcg
     1621 ggctcgacat cctttagatg ttgagttcgg ccacgtcgct tcgcccgcgc cttcctagcc
     1681 ctttccggcc tattttcagc ctcttgcccg ctgccgcccg gccactccgg ccagcgcagc
     1741 aaggctgctc caactgacag gccggcccgc cgtgtgagag actcgaaagt gtcacaggag
     1801 ggctcgggcg tcgtgcgcgg gcggcctaaa ataggcggcc gtcccgcacg gtctcccggc
     1861 gccgccacgg gcgcttttgt tagccttttc gggcaactca taaaggccgg ggggattctg
     1921 taggagatga acgtcacaca ccttgagtgc gcggcgtgcg gcgcccgcca cgaggcacgc
     1981 gtgttgcaca acctctgccg cgagtgcggg aagcctctgc tggttcgcta cgacctggag
     2041 agggccgcgc gcacgctgac gaaggaaagt ctgaagggaa gaagatcgga cttatggcga
     2101 tacatggagg tgctgcccgt cgggcgcgaa gaaggtgtcg tctcgctagg cgaaggctgg
     2161 acgccgctgc tcgacgcgcg ccgtctgggc gcgtcgctgg ggctcgggag gctctacgtc
     2221 aaggacgagt cgcagaaccc gacgcagagc ttcaaggcgc ggggcatgtc cgcggccgtc
     2281 tctatggcga aggagctggg cgcgcgtaaa gtagccgtac cgtcggcggg caacgccgcg
     2341 ggcgcgctcg ccgcatacgc cgcccgagcc ggcctcgaag cccatatatt catgccccgc
     2401 gacacgcccc gcgccaacgt catcgagtgc gagcaggcgg gggcgagcgt gaccatcata
     2461 gacgggctca tcacggactg cggggccgaa gtggcgaggc gcaaggaggc cgagggctgg
     2521 ttcgacgttt cgaccttgaa ggagccgtac agggtcgagg gcaagaagac tctgggctac
     2581 gagctggccg agcagatggg ttgggagctg cccgactggg tcatataccc tacgggcggg
     2641 ggcactgggt tgataggcat gtggaaggct ttcgacgaga tggagcgcat gggctggata
     2701 ggcccgaagc gcccgcgcat ggtgacggtg cagccgacgg gttgcgcgcc catcgtgcgc
     2761 gccttcgagg aggggaagcg cacggccgaa gagttcgaga acgcggcgac cgtcgcctcg
     2821 ggcctgcgcg tgccgaaggc cataggcgac ttcctcatac tcgacgccct gcgcgcatct
     2881 aagggggcgg ccatcgccgt ctcggacgag gagctgctcg cggccgtccg cgagataggg
     2941 gcggccgagg ggattttcgt agcgccagag ggggcggcgt gcctgccggc gctcagaagg
     3001 ctcgtggagc gcggcgacgt taagccccac gagagcgtcg tgctcttcaa cacgggcgcg
     3061 ggcgtcaagt acatggaagc gttcggcggt tgattttgac ggtcatgctg ttaaggggtt
     3121 tacggatgaa gataaaagcg caattgttca agttcacttt cgcggcggtg cttgcgtcag
     3181 cggcggcagc ggcggcgcag gcgcaggcgc cgaagtcagt cccggccggg ggcgagaagg
     3241 ctgctgcggc ggcttcgtcg tcgtgggcgt cgctcgaccg caagcggttt gatgagctca
     3301 gggccaatgg cttcgcggcg ctttataacc tcgactacga gggcgcgcgt cgcaccttca
     3361 acgagatggc gaaggagttc cccgaccacc cggccgggtc gcagttcctc gccgcggggc
     3421 tctggctgaa gaccctgaac gagtcgaggc ggcttcaggc ttcgctctac aacaccgagg
     3481 ggttctacaa ggaggaggag gacaaggccg acccgaaggt cttggccgag ttccgcgcgc
     3541 tcacgcgcaa ggccgaggcc ctgtgcgagc tgaggctcgc cgccgacccg aaggacaccg
     3601 aggctctgta ctatctcggc gccgtcgagg ggttgaaggc cgcgtggggc ggcatggtgg
     3661 agcgcagctt ccgctcggcg ctccgcaacg gcaacgactc cgtcggccat caccgcgcgc
     3721 tcgtcaagct cgaccccacg ttccacgacg cgaagataac gatagggatg tacgactacg
     3781 tcgtgggcgg gctgccgctt cccgtgaaga tcctcgccgc catcggcggc ttccgcggct
     3841 cgaagaagcg cggcctggcg acgctcgaac aggtcgcgcg cgaaggcaag tgggcgcgcg
     3901 acgacgcgaa gagcctgctc atcgcgctct tgaagcgcga gcgccgtttc cgggaggctt
     3961 accagcacgc gagcgacctc gcggcgaagt acccgcgcaa ctacatcttc aagatggagg
     4021 cggccgacgc actggtctcg caggccgagg ttgaccgcgc aaccaacccc gaggccgcga
     4081 agaagaccga ggatgaggcg ttcgccgtct tcgagtcgct gctggcggca acccgcggcg
     4141 cgcaatcaca ggggccgcgc ccgccgctcg acatggtcca cttcagctac ggcgaggcgc
     4201 tcttcgtcgc gggccacgcc gagcgcgcgg ctaaagagtt cctcgcggcg gcggcgctgc
     4261 cgggcgtcga gcagacgatg ctgacgcgct cgcgccttcg cgccgcgcag gcgcttgacc
     4321 tcgccggcaa gcgcgaggag gcgctcacgc actacaaggc cgtgctcgcg cggcccaacg
     4381 tcttcgactc gcacgaggac gccaagcgcg gcctcaagga gccctacaag cacccgcgca
     4441 aggtcgctga gaccgcgggc gactccgagg acgaaggcgg cgccgcttcg accgccaagg
     4501 cgaattagag tcagtcaaga cgggcagggg gagttttatg gacgacgcgt gcgcgtcaaa
     4561 cgaggtgatg gagacgctcg cggcgagggc cgaggaggcg gagcggctgg gcgtggcgcc
     4621 cggcgcgggc cagtcgccaa cgcgcccgcg ccgcctcctt atctgcctcg acggcgtccc
     4681 cttcgaggtc atacgcgcct taaagtcgcg cggcatgttc gacaacttcc gcgagccggc
     4741 ccgcctgctc tctcccttcc cgacgctcac gaacgtcgcg ctcgcccaga tgctcggcgc
     4801 gacgcccccg caggggtacg agagcctcta cttcgaccgc gactcgcgcg agctccgcgg
     4861 cggcgtgagc aagtacatag gcaggcgcac gcccgacaag gcgccttcct cctacatgga
     4921 ggagctggac taccaggagc cgctgccctt cgagttcctc atatacgtcg ccaccgacgc
     4981 cgtctggcag gccgacatgc gccgcttccg cgagcgcttc ctctcggcgc cgcccacgcg
     5041 cgacttcttc ggcttcctga aggccacgga cgggctgctc cacatcgcgg gcccggagcg
     5101 cctctccgtt gccatgcggt cgctcgaccg gatactgcgc cggctccagg gcgagtgcgg
     5161 cagcgagacc gagattgtcg tcttctcaga ccacggcatg aacctcgtcg agaaccggcg
     5221 ggtgcacttg cagtcgcacc tgcgcagcgc cggctacgac gttctcggga gcatgagggc
     5281 gaggatgcgt ggcagtcggc aggtggcggc gccggccttc gggctgtgcg gctacgtcgc
     5341 gctctactgc ggcgaggagg ttgaccgagc gcggctcgcc cgtgatctga cggggctcga
     5401 aggcgttgac ttcagcgttc accgcgacga cgacggggag acagtcgtgg tgacgggggt
     5461 gcgcggccgc gcgctcgtcg cgcgcgagca gaggggcgcg tcggccgcgt accgctacga
     5521 gcaggttgac ggcgacccgc tcgggctcgc cgccgtctcg caagacttac gcgaagaggg
     5581 cgtcatggac gggcgcggct tcgcgccgga cgaggcctgg ctctcgcgca cctgggacgc
     5641 cgagcggccg gacgcgctcg ccaacgtctt cgagtccgtt acgtcgccgc gcgtgcgcca
     5701 cacggcggac gtgctcgtct cgctccagga cggctactac tacggcgcgc ccgccttcag
     5761 ccggatggtg cgcctgctcg ccacgcacgg caacgccctg cgcccaagct cgcaggcctt
     5821 cctgatgagc acccaccgct ccttccccga ctacacacgc gcctgcgagg cccgcccgct
     5881 ccttcgcggt taagcgattg cgaagggcgt ggcgcctccc cgctcggccg tcgcttgacc
     5941 gcggggtcgg gcggcgctta caaaggctcg catgagctct gacgcggcgg cgggcgcgta
     6001 cgccatagag actttcgacc tggtgcggcg cttcggcgac tttttggccg tggacggcgt
     6061 gagcctgcgc gtgcgcgccg ggtcgttctt cggctttctg gggccgaacg gggcggggaa
     6121 gtcaacgacg ataaagatgc tgaccggcct gctcgctccg acctcggggc gcgtcgtcgt
     6181 gctcgggcgc gacatcgcgc gcgagccgct tgaggtcaag cgccgcatcg gcgtcgtccc
     6241 cgaagacctg aacctgttcg agcgccttac gggcgccgag atgctctcct tcacggggcg
     6301 catgtacggg ctggggcgcg acgagactgc gcggcgcggg cgagagcttt tggagctgat
     6361 ggagcttgac gacgagcccg gcaagctggt ggtggagtac tcgcacggga tgaagaagaa
     6421 gctctcgctg gcgtgcgcgc tcatacaccg ccccgagata ctcttcctcg acgagccgtt
     6481 cgagggcgtt gacgccatcg cctcgcgcac gctcaagggg ctgctctcgc gcctgacctc
     6541 gcgcggcatg accgtcttcc tcacgtctca cgtcctggag atagtcgagc ggctctgctc
     6601 ggacatcgcc atcataagcg aggggcggct ggtcgcttcg gggccgctcg aagagctccg
     6661 gcgcggcgtg ccggtcgaag gcgaggggcg cggcccgcag ctctcgctcg aagactactt
     6721 cataaaggta gtcggcgggg cgcccgaagc gggcgcgggc gcgctgtcgt ggctcgggtg
     6781 agaagaaagg gaaggtttga aaaggccgcg gggcgccgga ggcaacacct cccgcgcccc
     6841 gcggcctttt aacgccccga ccggcgcttt aggggagcgc ttccacgatc atgtagaagc
     6901 ggaatgtgcc ggtctgctcg aggccgagcc ggaaccgcac gttgattgag tcgcccggcg
     6961 cgatacccgg gacgagcgtc accgtcatcg tcgaattgaa gccgccgccg ttgggctgga
     7021 cgggcggctg ctccaccacc gtcggcatca cttccaccgt gcacgggttc ggagtccccg
     7081 gcgggacgga cgtgtcggcg caggtctccg cgtcgccgat gctggagacc atctcgggca
     7141 ccgtggagtc tctcgcccgc aggtcggcga agccgggcgc cggcgggaat gtggttatct
     7201 cgacgatgcg gaaccgcagc cgcgtgaccg tcgagctcgt gttgttctcg atcctgcggc
     7261 gtacgacgag cgtgccgtgg gtgccgccgg ggtcctgagc ctgggggaac cgcgagcggt
     7321 tcggccccgc cgagagcggc tgcgagcggt cgagcggtag cacgtcaatg ccggagttct
     7381 tcctcagggg cgaactcttt tcctccggcc ccggcgcgcc gagccgctgc ccggcgccga
     7441 aggccgacat gtccgtcgcc tccacgtcgg cgaagaggaa gtcggaggcg ttgacgttcg
     7501 tgtccttcga cgtgccgacc acggtgcacc cgaccccgcc gacgaaagag cacatcgagc
     7561 ggaagaaggt gtactgcgtc gtcacgccgc cggggaagtt gccggccacc ggcgccagcg
     7621 tcgccccctc gcgcagaagg ttgcagttag tgcccgtgtt tatgccgaag cccacggcgt
     7681 ccagccggtt gaccgacgag agggccgccg ggtcggccgt cttgaagatg gcgacgttgc
     7741 ggttgtcctc tatgtcggac gacatcgtct ggtcgccgtc tgtggcgtca gtcccgccgt
     7801 agtcggccag cgagtattgc gtgccgacga acaggaagtg gccgcgcgga tctatctcgg
     7861 tgccttcgga gatggtgccg atgaggacgg gcgtgtcgcc gcagcccgcc cccatcttga
     7921 agaggccgta gccggtgtcg tcggccgagt caacgatgtg cttagtgtcg gagttgttgt
     7981 aaatctcgac gaagtcgtcg gcagagccgc ccggcccgct cgtgcgaagc tcgctgatga
     8041 gaatcgcgcc gggcgggttg gtggccgtga tggtgccagt ggccgtgccg tcggctatcg
     8101 tggcgccggt ggcgccgctg agcttgacga ggaacgtctc gtccggctcg gcgttgtccg
     8161 cgtcagagca gacggggacg ttgatggact gcacctgctg gcccgtcgtg aagttgagga
     8221 caccggtgga cgtcgtgtag tcgccgcagc ccgcgactgc cttgcccggc ccggccggct
     8281 cctcctcggt cgtgaagctg accgagacga ggccgggcgc cggggccgag agcgtgaccg
     8341 tgaagaccat gtcggtcgtg cccgtggccg gctccgcagc ggtcgcgtcc atgacgaata
     8401 tcttgagcgc gtccacgggc gtgagcgtcg ggtcggacga gcttgtcgcg tcgcccgggt
     8461 cgtcggtctg gacgcttatg ccgttgtcgg ccgtcactgt gccctggttg gacacgttcg
     8521 ggccgcccgt gtacgggtct gcgaccgtcg cctggaaggt tatctcgacg ctgtcgcccg
     8581 agcgcagcgt gcctatcttg acgttgatgg tctcgccggc cgcgcttatg accggcttga
     8641 gcctgcgcgt cacgcccttg cggccgttgg gcgccgtggg cgtgtcgccg cccttcgggg
     8701 ccttgaccgc ggccttgccc gccttagccg ccgcgcccga ctgcttctgc gccggccgct
     8761 gcggggcgac cgagagcgcg ggcgacttct gctgccgatt ctgcgggaat gagacgaacg
     8821 ggcgcgaagt cacgccgccc tgagccgcct cttcgaccgc gaccttgctc ggcccgcggt
     8881 cggcgcctgc ggccgcaaac tcaagccgga gcggcgctga cggcagggtg ggctgggcgc
     8941 aggggttgcc cggccccggg gtgttgacga accccccgcc cggcccgttc ggcggggcca
     9001 ccccgaccga gttagtagcc gataccgtgt cgcccaggct cgggttcctc gcctgtaagt
     9061 aggcgaccac ggccgcgttg ttgttgttcg cccccgtgta gcccggcaac tggatggtgg
     9121 tctccatcct ctgccgcacc ctcagcccgt cggccgccgc gctcaccgct gtgttactag
     9181 atatgtcggc gcagattatt ccgtcgttgc ccgtcagcgt ccccccctgc acgaatatcc
     9241 cctcgaaccc ggacgggttg tccgcctcca cgttgttgcc cgtcacggtg acgttcaggc
     9301 ggttgttccc cgagttgtcc tccgccatgt tcaaggtcat cccgcggttg gcgaccccgt
     9361 ctatcacgtt g
//
LOCUS       DASPKR010000432         2148 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_838577, whole genome shotgun sequence.
ACCESSION   DASPKR010000432 DASPKR010000000
VERSION     DASPKR010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2148)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2148
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_838577"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1074)
                     /locus_tag="VD968_11655"
     CDS             complement(<1..1074)
                     /locus_tag="VD968_11655"
                     /inference="COORDINATES: protein motif:HMM:NF038128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choice-of-anchor J domain-containing protein"
                     /protein_id="HYE15089.1"
                     /translation="MHSGRADYNLSTDGVLTMMTTRSRDFVRAAAALAAFCACLLFSP
                     PPALAQANFVESFDNVGPTNSGQDGPQNLIGRGWVFRNQSSPRGATTWHHGYSPDVQP
                     GWPSPQAGEGYVAVESSSTDFFGGRVSNWAILPQVQGQRAGDTLTFYVTNLYSHNTPT
                     LQVRYSPGGGTGTGSGADAVGDFTQLLLDINPLPVGGWNRYSVTLPGPGRVALRYYVA
                     QACNFGCSVSYTGIDTLSIGAPPTPACNLPPVPSAGQTVTWEAERSPYRVCENIAAPP
                     GSTVNVEAGVRVDFDPLRQLVVNGTLNIQGSPSARVSFNGSALSPPVVKTINGTVNAS
                     FVDFGMPFFVEDGSDVALSDCSFS"
     gene            complement(1536..>2148)
                     /locus_tag="VD968_11660"
     CDS             complement(1536..>2148)
                     /locus_tag="VD968_11660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15090.1"
                     /translation="FFLSIEFQETGYLVYRTYKAAFGNLPNAPVPVRLREFLADTRQI
                     GEGVIVGTPGWPEKLEANKDAYMLEFVQRPEFLAAYPSTMTPAQFVDTLNANAGGALS
                     QEERDQQVAALSANNTAQGRADVLRAVAEDEQLRQAEFNRAFVLMQYFGYLRRNPNDA
                     PDTGFGGYNFWLGKLEEFGGDWRRAEMVRAFIESIEYRRRFAP"
BASE COUNT          337 a          688 c          773 g          350 t
ORIGIN      
        1 cgagaaagag cagtcggaga gggcgacgtc cgacccgtcc tcgacgaaga acggcatgcc
       61 gaagtcaacg aacgaggcgt tgaccgtgcc gttgatggtt ttgacgacgg ggggggagag
      121 ggccgagccg ttgaaggaga cgcgcgcgga cggcgagccc tgtatgttga gcgtgccgtt
      181 gacgaccaat tggcgcagcg ggtcgaagtc aactctgacg ccggcctcga cgttgaccgt
      241 cgagccgggc ggggctgcga tgttctcgca gaccctgtag gggctgcgct cggcctccca
      301 cgtcaccgtc tgccccgcgc taggcaccgg cggcaggttg catgcggggg tgggcggcgc
      361 ccctatgctc agagtgtcta tgcccgtgta ggagacgctg caaccgaagt tgcaggcctg
      421 cgccacgtag tagcgcaggg cgacgcggcc cggccccggc agcgtgacgc tgtagcggtt
      481 ccagccgccg acggggagcg ggttgatgtc gagaagcaac tgcgtgaagt cgccgacggc
      541 gtccgcgccc gagcccgtgc ccgtgccgcc gcccggcgag tagcgcacct gtagcgtggg
      601 cgtgttgtgg ctgtagaggt tcgtgacgta gaaggtgagc gtgtcgcccg cgcgctgccc
      661 ctggacttgc gggaggatgg cccagttgct gaccctcccc ccgaagaaat cggtgctcga
      721 gctctcgacg gcgacgtagc cttcgcccgc ctgcggcgag ggccagcccg gctgcacgtc
      781 cgggctgtag ccgtggtgcc acgtggtcgc gccgcgcggg ctgctctggt tgcggaacac
      841 ccatccgcgg cctatcaggt tctgcgggcc gtcttggccg gagttggtcg ggcctacgtt
      901 atcgaagctc tcgacgaagt tggcctgtgc cagagccggc gggggcgaga aaagcaagca
      961 cgcgcagaag gcggcaagcg ccgcggccgc ccttacaaaa tcacgggagc gagtggtcat
     1021 catggtgagc acgccgtccg ttgataggtt gtagtcggcg cgccccgaat gcacgctcgc
     1081 gccggtgggt aaacgcggtc gggtcaacag tccgcgggcg ggcgcagggg atacgcccgt
     1141 ccgcctttta cggacgttta cgggtagttg attgtcaggc gggcgggtga gagccgcggc
     1201 cccgcgcgcc gcctgcgact taaattgggt ttcggggagc ctcgccgtct ctgcacgcac
     1261 tatacgcctg cggcggtgtt ctcacaatag cgccgcccgc gtaaaaattt cacgctctcg
     1321 cccgtgaaag tcggcttccg ccgcagaggc gcggagcgca cagggcccgg gccggaggcc
     1381 gtgggtgaaa atcgttcgcg ggcggttaag tgctacgggg gggcgcgcgc gagcccgagc
     1441 cggctgagcc gtgccatgac tgtagaaaag agagggacga ggccagcggc cccgcccctc
     1501 tgaattaacc tctggctgtg ccgccgcggc cgcccctacg gcgcgaacct ccggcggtac
     1561 tcgatggact cgatgaaggc cctaaccatc tcggcgcggc gccagtcgcc gccgaactcc
     1621 tccagcttgc cgagccagaa gttgtagccc ccgaagcccg tgtcgggcgc gtcgttcggg
     1681 ttcctcctca ggtacccgaa atactgcata agcacgaacg cgcggttgaa ctcggcctgc
     1741 cgcagctgct cgtcctccgc tacggccctg agcacgtccg cgcggccctg cgccgtgttg
     1801 ttggccgaaa gcgccgccac ctgctggtcg cgctcctcct gcgagagggc gcccccggcg
     1861 ttcgcgttca gcgtgtcaac gaactgcgcc ggggtcatcg tgctcgggta tgcggccaag
     1921 aactcgggcc gctgcacgaa ctccagcatg taggcgtcct tgttggcctc gagcttctcg
     1981 ggccagcccg gcgtgccgac gatgacgccc tcgccaatct ggcgggtgtc ggcgaggaac
     2041 tcgcggaggc ggacggggac gggcgcgttc ggcaggttgc cgaaggccgc cttgtaagtc
     2101 cggtagacga ggtagcccgt ctcctggaac tctatcgaga ggaagaag
//
LOCUS       DASPKR010000433         3774 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1355392, whole genome shotgun sequence.
ACCESSION   DASPKR010000433 DASPKR010000000
VERSION     DASPKR010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3774)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3774
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1355392"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..551
                     /locus_tag="VD968_11665"
     CDS             105..551
                     /locus_tag="VD968_11665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15091.1"
                     /translation="MAKKKDEGVLDTAREVVGGIIETASGALAGVIGQASGLADSARE
                     TASEVVRGVIPAGPGGPGRKGTGGAARKAARGGTKRARKASSRTSKAARDAAGATTRA
                     AGGAARTAGRSTARAAKGAAKAAKPSRKGSQGGGKKGPAKKKGGGK"
     gene            796..1797
                     /locus_tag="VD968_11670"
     CDS             796..1797
                     /locus_tag="VD968_11670"
                     /inference="COORDINATES: protein motif:HMM:NF015251.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYE15092.1"
                     /translation="MAKKGKAQIFLEYAAARALLSGLGALPRPLAVAAGRGLGRAAYA
                     LAGGLRRTGMRNLELAFPEMSERERERILRGSFRSLGRQLGEVSQFPRVTPERLREVV
                     EYDAEDVKLLDVARERGRGVIFLTSHLGAWELLCFAHSVFYSPLSFLVRPVDNPRVEE
                     LVEGIRTRFGNRPIDKKAAARTALRLLKEGGTLGVLADLNTQEREGVFVPFFGHLACT
                     TAGVATLALRTDATVIPVCAPWDERRRKFVFRGGPVVELVRTGDDRRDVEINTARFTE
                     AIERHVRLFPDQWLWIHKRWKTRPPGEPDLYTRPTQKLQKLERDAKIIAGGSTGEMF"
     gene            complement(2252..3013)
                     /gene="fabG"
                     /locus_tag="VD968_11675"
     CDS             complement(2252..3013)
                     /gene="fabG"
                     /locus_tag="VD968_11675"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002442508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HYE15093.1"
                     /translation="MSDGVKPFDGRAALVTGATRGIGRAVALELARRGASVAFNYAQS
                     AGAADSVKAEIEALGVGCFASRCDVASTEAAAEMVKQVKDSFGRIDFLINNAGITRDN
                     LILRMKEEDWDAVIDTNLKGAWNFSRAALRHMLRQEGGGSILNISSISGLVGMAGQSN
                     YSASKAGMIGLTKALAKEVASRNVSVNALALGLVTSDMSQALDEAYRQKLLEQIPMKR
                     FAEPEEVARIACFLLSDEARYITGQVIQADGGLAM"
     gene            3184..>3774
                     /locus_tag="VD968_11680"
     CDS             3184..>3774
                     /locus_tag="VD968_11680"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HYE15094.1"
                     /translation="MKLIILGAGYATRLYPLTLNQPKPLLPVAGKPMIEHVLDNLTPI
                     EEIDHVYVVTNAKFADHFQRWADGYRATKGGADFTIINDKSTDDSNKLGAIGDLHLVL
                     EAAGIDDDVIVVAGDNLFSHGLKEFGEFCREKGAPVLAVYDVGDLEEIKKYNAIEVGE
                     DGRITFFEEKPAEPKSTLTGIALYFYPRSALPLIKQY"
BASE COUNT          719 a         1202 c         1199 g          654 t
ORIGIN      
        1 tccaccacgg cgggccggtg gacgtagagg tatggccgct cgcggaggtc tgaagtgccg
       61 cgtaagtgag agcccgtaag caccgaatgt ccggaggtat tgtgatggct aagaaaaaag
      121 atgaaggcgt gctcgacacc gcccgcgagg tggtcggcgg gatcatcgag acggcgtccg
      181 gcgcgctcgc cggagttata gggcaggcgt cggggctggc ggattcggcg agggagacgg
      241 cctccgaagt cgtccgcggc gtcatccccg cggggccagg cggccccgga cggaaaggca
      301 cggggggtgc cgcgaggaag gccgcccgcg ggggtacgaa gcgagcccgg aaggcgtcgt
      361 cacgaacgtc taaagccgcg cgcgatgcgg cgggcgctac cacacgggcc gcgggcgggg
      421 cggccagaac tgccggcaga agcacggccc gagctgccaa gggggctgcc aaagcggcca
      481 agccaagcag gaaaggttct cagggaggcg gtaagaaggg cccggccaag aagaaaggcg
      541 gcggaaagta agcccgcgac accgcctcag aagaagttct catacggcag ttcaaaaaaa
      601 gcggaggctc aaacccaggt tttaccacct gatttgagcc tccgccaaac cagatcgaga
      661 ctgatcgaaa agcccatttt cttttccccg aaggcataag agcctttgct tatagcacgc
      721 gccgcgcgcg gcgggcctgc gtttgcccgc gcccgagcgc gcaagttaaa ctgtgcgcct
      781 tgttcggcga aggccatggc taagaagggg aaggcgcaaa tctttcttga gtacgcggcg
      841 gcgcgcgccc tgctctcggg gctcggcgcg ctgccgcgtc ccttggccgt cgcggccggg
      901 cgcggcctcg ggcgcgcggc ctacgcgctc gcgggcggcc tccgccgcac gggtatgcgt
      961 aacctcgagc tcgccttccc cgagatgagt gagcgcgagc gcgagagaat cttgcgcggc
     1021 tcttttagga gcctcggccg gcagttgggc gaggtgagcc agttcccgcg cgtgacgccg
     1081 gagcggctgc gcgaagtggt cgagtacgac gcagaggacg taaagctcct cgacgttgcc
     1141 cgcgagcgcg gccgcggcgt catcttcctc acctcgcacc tcggcgcgtg ggaattgctc
     1201 tgcttcgcgc actccgtctt ctacagcccc ttgagtttct tggtcaggcc cgttgacaac
     1261 ccccgcgtcg aggagctggt cgagggcata aggacgcgct tcggcaaccg gccgattgac
     1321 aagaaggccg ccgcgcgcac ggccctgcgg ctgctcaagg agggaggcac gctcggcgtg
     1381 ctcgccgacc taaacacgca ggagcgcgag ggcgtcttcg tccccttctt cggccacctc
     1441 gcctgcacga cggcgggcgt cgcaacgctc gccctgcgca cggacgccac ggtcatcccc
     1501 gtctgcgccc cgtgggacga gcgccgccgg aagttcgtct tccgcggcgg ccccgtcgtc
     1561 gagctcgtgc gcacgggcga tgaccgtcgc gacgttgaaa tcaacaccgc tcgcttcacc
     1621 gaagccatag agcgccacgt ccgcctcttt cccgaccagt ggctctggat tcacaagcgg
     1681 tggaaaacac gcccgcccgg cgagcccgac ctctacacaa ggccgacaca aaagctccag
     1741 aagttagaac gtgatgccaa aattatcgcg ggcggctcaa ccggagagat gttttaaact
     1801 taatgagcgg gttctcaaga attactttaa ccttttagct tcagcaactt aaccgctacc
     1861 tcacgtgctg ttacgaattt gtgtagaaac attgtatttt gtgcttgaca aatcacggag
     1921 gattagtgta attttacaca cgttacgaag ccaatgcatt tacagagagc ttcgcggttg
     1981 attgaacgag gacggcggtt gggttccttc agtctcaagg gcgaagagct tgttagaaat
     2041 ttagctctcg ttaggactga gcagcactga gctattttat ctcgcccatc ccaacacgac
     2101 cgccccaaaa gccggatcgc ccgtaggtga cgatctccag cgcctgtcaa cgccaccctg
     2161 atctccgagc ctgcccgaaa attccgcccc gtcggttaac cctaaaccga cggggcgcgc
     2221 ttcttttacc cgaaagtttt cggccaagcc cctacatcgc caagccgccg tcggcctgta
     2281 tgacctggcc ggtgatgtag cgcgcctcgt cggagagcag gaagcaggct atgcgtgcga
     2341 cctcttcggg ctcggcgaag cgcttcatgg gtatctgttc gaggagtttc tggcggtagg
     2401 cttcgtcgag ggcttgagac atgtcgctcg tcacaaggcc gagcgctagt gcgttgacgg
     2461 agacgttgcg gctcgcgacc tctttggcga gcgctttcgt caacccgatc atgccggcct
     2521 tcgacgcaga gtagttcgac tgccccgcca tccccaccag cccgcttatc gaagagatgt
     2581 tcaggatgga gccaccgccc tcctgccgca gcatgtggcg gagcgccgct cgtgagaagt
     2641 tccatgcgcc cttgaggttc gtgtctatga cggcgtccca gtcctcctcc ttcatgcgta
     2701 gtatgaggtt gtcgcgcgtg atgccggcgt tgttgatgag gaagtctatg cgcccgaacg
     2761 agtccttgac ctgcttgacc atctcggcgg cggcttccgt gctcgccacg tcgcagcgcg
     2821 aggcgaagca gccgacgccg agcgcctcga tctcggcctt gaccgagtcg gcggcccccg
     2881 cgctctgcgc gtagttgaag gccacggacg cgccgcgacg cgctagctca agcgccacgg
     2941 cgcgcccgat gcctcgcgtc gcgcccgtga cgagcgcggc gcgcccgtcg aaaggtttca
     3001 ccccgtcact caagataatt ttccctccga gatttacggc ccggcgcaat atagcagagc
     3061 gcggcggccg cgccaaaagc gtgcgcgcgc cgcccgcgcg ctccgcggct tcgtttgccc
     3121 ccggcgcgct tttattgtaa agattccggc agcaacacga gccgccagaa aatcgggggg
     3181 agcatgaaac tgataatact cggggcgggc tacgcgacgc ggctctaccc gctgacgctg
     3241 aatcagccga agccgctgct gccggtcgcg ggcaagccca tgatcgagca cgtgctcgac
     3301 aatttgacgc ccatcgaaga gattgaccac gtctatgtcg tcacgaacgc gaagttcgcc
     3361 gaccacttcc agcgttgggc ggacggctac agggcgacga agggcggggc cgacttcacc
     3421 atcatcaacg acaagtcaac ggacgactcg aacaagctcg gcgccatcgg cgacctccat
     3481 ctcgtgctcg aggccgcggg gattgacgac gacgtcatcg tcgtcgcagg cgacaacctc
     3541 ttcagccacg gcctcaagga gttcggcgag ttctgccgcg agaagggcgc gcccgtgctc
     3601 gccgtctatg acgtgggcga cctcgaagag ataaagaagt acaacgccat tgaggtcggc
     3661 gaggacgggc gcataacctt cttcgaggag aagccggccg agccgaagag cacgctgacg
     3721 ggcatcgccc tctacttcta cccgcgctcc gcgctgccgc tgattaagca gtat
//
LOCUS       DASPKR010000434         5138 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1228253, whole genome shotgun sequence.
ACCESSION   DASPKR010000434 DASPKR010000000
VERSION     DASPKR010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5138)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5138
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1228253"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..420
                     /locus_tag="VD968_11685"
     CDS             <1..420
                     /locus_tag="VD968_11685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15095.1"
                     /translation="VSTLRLLLLGFALPLAAAHLWLSTARDGLKATLRRAHRVIARAF
                     APASVFIYALGLLVFGLMPYFVIYTRTPVKNGWAELTLFGLRLAFAFALTLWGWAITV
                     GALARIAPPAEPAPAEAGAEPARPPEPPALEGAQPQT"
     gene            435..3119
                     /locus_tag="VD968_11690"
     CDS             435..3119
                     /locus_tag="VD968_11690"
                     /inference="COORDINATES: protein motif:HMM:TIGR02669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIID/LytB domain-containing protein"
                     /protein_id="HYE15096.1"
                     /translation="MTGGLYHIGTKAQKGRAFVLLLLCLCAAALLAWALPGGRGARPL
                     GEGELDAALLRAAEEALGGREGAVLVMDAQTGRLRAVVNRRLAFETATPPGSAVKPFT
                     MLTALRLGSLDEAAARSCPGAYERGELRLACAHPRHDTPLGAARAIADSCNNYFGRLA
                     ETVDGRDFDATLAAFGFGERTRGGGDREAAGERPRAGAQVADMLGESERTRVTPAQLL
                     TAYAALFNGGRRFVPREAAPRGFEPEELDRAAVPDDHRRLLFEGMRGAVTQGTASGAG
                     LAGLPLRVFGKTGTSTPSEHWRPQGWFVGLAAEATNDEKRTPAPAEVKLAVVVLLKRA
                     SGSQAAEVSRPVFEAYADALARRQVAAREGKAADGGASSLSPAGAGGPAAVRVRVSRA
                     GATLALPLEDYVFGVLAAEGSVETEPEALKALAVAARTYALHNLRRHSRAGFDFCDTT
                     HCQRFAHVADESARPDFYDVLRRAVRETAGEALFDPAGRVAESYFSASCGGSTTGPSK
                     LWGGPASPAHLRGVRDESCAAAGGAWTDVIPRGRLLAALRADERSDVGARLDHVRVAR
                     RDSSGRAELVVLEGERRRLLRGWDFKIIVGRSLGWNVLKSSRFEVARSGDAFVFRGRG
                     FGHGLGLCQAGAHTLASRGAPYRQILDKYFPGARIRAVDERDAGSRSAFRTASFVSED
                     DGGAPLFINAGAVAPAQHQTLSSENFRVSLPARSPRRDAEEALRALESARAELVRRLS
                     RAGLGDALAGDVELFVHETTGDFTSATSQPAWVGAVTTGRRIDSQPLELLRRRGVLLS
                     TLRHEAVHAACESLGRGRAPRWLVEGLAAHVAGEGAALARSAPKAAMTLEEIERGLEG
                     RPASAARARELYAAAYAEVLKLIRREGEAALWRRVARG"
     gene            3186..4172
                     /locus_tag="VD968_11695"
     CDS             3186..4172
                     /locus_tag="VD968_11695"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HYE15097.1"
                     /translation="MEHTTHGSRRFAAFAWAVLAFNLLVILWGAYVRATGSGAGCGDH
                     WPLCNGVVVPDAPEVKTVIEFTHRLTSGLALLLVVALVAWAFRSYSKGHAVRRGAVLS
                     LVFILVEALIGAGLVLLQLVADDASVARAAYLSVHLVNTFVLVAVLALTAWWASAGEA
                     PRWRESPPRLRRHVVAALAATLALGVSGAVAALGATLFPESAAEVARRDLSAPAQLLF
                     SLRHYKLHPALAAAVGAYLIAFAVAVRRKRPGAWAARWARAVVALVLVQTAAGLINAA
                     LLAPVWLQIVHLLLADLLWLALVLLSATALSQAEAQAEGARSGAALGQAVGV"
     gene            4192..>5138
                     /locus_tag="VD968_11700"
     CDS             4192..>5138
                     /locus_tag="VD968_11700"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HYE15098.1"
                     /translation="MRGLLLLLALVASGCAAEPAQVQGGRAEATPTPAATPSRPAAGA
                     RQLLEDVRALSSDEMQGREAGTEGAAKARAYIAGRFREAGLKPLWGDSFEQPFDLPAA
                     RGGKKREGVNLVGVATGKTRPERLLVVTAHYDHLGARGGQVFNGADDNASGVAVLLQL
                     AAHFARERPENSMVFAALDAEEAGLLGAEALARKLTAERRDVALNVNLDMVSRSDRGE
                     LYAAGAHHYPRLRPLLEQVAARAPVKLLLGHDRPEQGDDDWTTQSDQGAFHRRKIPFV
                     YFGVENHKDYHRPTDDFEAVNRDFFVKAAETILDAVETL"
BASE COUNT          659 a         1905 c         1812 g          762 t
ORIGIN      
        1 gtctcgactc tgaggctcct gctcctcggc ttcgcgctcc cgctcgcggc agcgcacctc
       61 tggctctcga ctgcgcgcga cgggctgaag gcgacgctgc ggcgcgcgca ccgtgttatc
      121 gcgcgcgcgt tcgcgcccgc gtcggtcttc atctacgccc tcggcctcct cgtcttcggg
      181 ctcatgccct acttcgtcat ctacacccgc acgcccgtca agaacggctg ggcggagctc
      241 acgctcttcg gcctgcgcct cgcgttcgcc ttcgcgctca cgctctgggg ctgggccatc
      301 acggtgggcg cgctcgcgcg catcgccccg ccggcagagc cggcgccggc cgaagctggc
      361 gccgagcccg cgcgcccgcc cgagccgccc gcgctcgaag gggcgcagcc gcagacctga
      421 agagggcgcc tacagtgacg ggcgggcttt accacatagg cacgaaggca caaaagggga
      481 gggcgtttgt ccttctcctt ttgtgccttt gcgcggcggc gctcctggcg tgggcgctac
      541 cgggaggaag aggcgcgcgc ccgctcggag agggagagct tgacgccgcg ctcctgcgcg
      601 cggccgaaga ggcgctcggc gggcgagagg gcgccgtcct cgtcatggac gcgcagaccg
      661 gaaggctgcg cgcagtcgtc aaccgccgcc tcgcgttcga gacggccacg ccgcccggct
      721 cggccgtcaa gcccttcacg atgctcacgg cgctccggct cggctctctc gacgaggccg
      781 cggcccgctc ctgccccggc gcatacgagc gcggcgagct gcggctcgcc tgcgcgcacc
      841 cgcggcacga cacgcccctc ggcgcggcgc gcgccatcgc cgactcctgc aacaactact
      901 tcggccggct cgccgagacg gttgacgggc gcgacttcga cgctacgctc gccgccttcg
      961 gcttcggcga gcgcacgcgc ggcgggggcg accgagaggc agcgggcgag cgcccgcgcg
     1021 caggcgcgca ggtcgccgac atgctcggcg aaagcgagcg cacacgggtc acgcccgcgc
     1081 aactcttgac ggcctacgcc gcgctcttca acggcggccg gcgcttcgtc ccgcgcgagg
     1141 ccgcgccgcg aggcttcgag ccggaggagc ttgaccgcgc ggctgtcccc gacgatcacc
     1201 ggcgcctgct cttcgagggg atgcgcggcg ccgtcacgca agggactgcc tcgggcgcgg
     1261 ggctcgctgg gcttccgttg cgcgtattcg gcaagaccgg cacctcgacc ccttccgagc
     1321 actggcgccc gcaaggctgg ttcgtcggcc tcgccgccga agcgacgaac gatgagaagc
     1381 ggacgcccgc gcccgccgaa gtcaaactcg ccgtcgtagt gctcctgaag cgcgcctccg
     1441 gctcgcaggc ggcggaagtc tcgcgcccgg tcttcgaggc ttacgccgac gccctcgcgc
     1501 gtcggcaagt cgcggcgcgg gaagggaagg cggctgacgg cggggcgtcg tcgctctcgc
     1561 ccgccggcgc gggcggcccc gccgcagtgc gcgtgcgagt ctcgcgcgcg ggcgcgacgc
     1621 tcgccctccc gctcgaagac tacgtcttcg gggtgctcgc cgccgagggg agcgtcgaga
     1681 ccgaacccga ggcgctcaag gcgctcgccg tcgccgcacg cacctacgcg ctccacaacc
     1741 tgcgccgcca ctcgcgcgcc ggcttcgact tctgcgacac gacgcactgc cagcgcttcg
     1801 cgcatgtcgc ggacgaatcg gcgcggcccg acttctacga cgtgctccgc cgcgccgtgc
     1861 gcgagaccgc gggtgaggcg ctgttcgacc cggcgggccg cgttgccgaa agctacttca
     1921 gcgcctcctg cggcggctcg accacgggtc cctcgaagct ctggggcggc cccgcctctc
     1981 ccgcccacct gcgcggcgtg cgcgacgaat cttgtgcggc ggccggcggc gcctggacgg
     2041 acgtgatacc gcgcggccgg ctgctcgcgg ctctgcgcgc cgacgagcgc tccgacgtgg
     2101 gcgcgcgctt agaccacgtg cgcgtcgcgc gccgagactc ttccggccgc gcggagttgg
     2161 tcgtgctcga aggcgagcgg cggagacttt tgcgcggctg ggatttcaag ataatcgtcg
     2221 ggcgctcgct cggctggaac gtcctaaaaa gctcgcgctt cgaggtcgcg cgctcgggcg
     2281 acgccttcgt cttccgaggc cgcggcttcg gccacggcct cggcctctgc caggccggcg
     2341 cgcacacgct cgcctcgcgc ggcgcgccct accgccagat tctcgacaag tatttccccg
     2401 gcgcgcgcat ccgcgccgtt gacgaaaggg acgccggctc gcggtcagcc tttcgtactg
     2461 cctcgttcgt gagtgaggac gacggcggcg cccccctctt catcaacgcc ggggcggtcg
     2521 cgccggctca gcatcagacg ctttcgagcg agaacttccg cgtgagcctc cccgcgcgct
     2581 cgccgcgccg cgacgccgaa gaggccctcc gggctctcga atcggcgcga gccgaactgg
     2641 tgcggcgact cagcagggcc gggctcggcg acgcgctcgc cggcgacgtg gagcttttcg
     2701 tccacgagac tacgggcgac ttcacctcgg cgacgagcca gcccgcgtgg gtcggcgccg
     2761 tcaccacggg gcgccgtata gactcgcagc cgctcgaact cttacgccgc cgcggcgtgc
     2821 tcttgagcac gctccggcac gaggccgtcc acgccgcgtg cgagtcactc ggccgcggcc
     2881 gcgcgccgcg ctggctcgtc gagggcctgg ccgcgcacgt cgcgggcgag ggcgccgcgt
     2941 tggcgcgctc ggcgccgaag gccgcgatga cgctcgaaga gatagagcgc gggctcgaag
     3001 gccgcccggc ttcggccgcg cgcgcgcgtg agctttacgc cgccgcctac gcggaagtcc
     3061 tcaagctcat acgccgcgag ggcgaggcgg ccctctggcg ccgcgtcgcg cgcggctgac
     3121 gcggccgttt gccttcaaac gagcgggcgc gtgataatcc gtcacgtcag cttcccgtaa
     3181 tcatcatgga acacacgacg cacggatcga gacgcttcgc ggccttcgcg tgggcggtct
     3241 tggccttcaa cctgctcgta atactgtggg gcgcttacgt gcgcgcgacg ggatcggggg
     3301 ccggctgcgg cgaccactgg cctctgtgca acggcgtggt cgtccccgac gcgccggagg
     3361 tcaagaccgt tatagagttc acgcaccggc tgacgagcgg cctggcactg ctgctcgtcg
     3421 tcgcgctagt cgcctgggcg tttcgctcct actcgaaggg ccacgccgtg cgtagagggg
     3481 ccgtgctctc gctcgtcttc atcctcgtcg aggctctcat cggcgccggc ctcgtgctcc
     3541 tgcaactggt cgccgacgac gcctctgtgg cgcgcgccgc ctacctctcc gtccacctcg
     3601 tcaacacctt cgtgctcgtc gccgtgctgg cgctcacggc ttggtgggct tccgcgggag
     3661 aggctccgcg ctggcgcgag agcccgccgc ggctgcggcg tcacgtcgtg gcggcgctcg
     3721 cggctacgct cgcgctcggc gtgagcgggg cggtcgcggc gttgggcgcg acgctcttcc
     3781 ccgagagcgc cgcagaggtt gcgaggcgcg acctctccgc gccggcccaa ctgctcttca
     3841 gcctgcgaca ctacaagctg cacccggcgc tcgccgccgc agtcggcgct tacctcatcg
     3901 ctttcgcggt cgcagtccgc cgcaagcgtc cgggcgcgtg ggccgcgcgc tgggctcggg
     3961 cggtcgtcgc gctcgtctta gtgcagacgg ccgcggggct tattaacgcc gcactgctcg
     4021 cgcccgtctg gttgcagatc gtccacctgc tcctcgcaga ccttttgtgg ctcgcgctcg
     4081 tgctgctctc ggccacggcg ctctcgcagg ccgaagcgca agcggagggc gcgcgcagcg
     4141 gggcagcgct cgggcaggcc gtgggcgtct aattgggcgt tacggaggac gatgagagga
     4201 ctgcttcttc tgttggcgct cgttgcgtcg ggttgcgcgg cggagccggc gcaggttcag
     4261 ggcggcaggg ccgaggcgac gccgacgccc gcggcgaccc cgtcgcggcc cgccgcgggc
     4321 gcgcgtcagc tactcgaaga cgtgcgcgct ctttcgtccg acgagatgca ggggcgcgag
     4381 gccgggactg aaggcgcggc gaaggctcgc gcctacatcg ccgggcgctt ccgagaggcg
     4441 ggcctgaaac cactctgggg cgactcgttc gagcagccct tcgacttgcc ggccgcgcgc
     4501 ggggggaaga agcgtgaggg ggtgaacctc gtcggcgtag ccacgggcaa gacgcggccc
     4561 gaacgcctgc tggtcgtcac ggcgcactac gaccacctcg gcgcccgcgg cggtcaggtt
     4621 tttaacggcg ccgacgacaa cgcctcgggc gtcgccgtgc tgcttcagct cgccgcgcac
     4681 ttcgcgcgcg agcgccccga gaactccatg gtcttcgccg cgctcgacgc ggaggaggcg
     4741 ggcctgctcg gcgccgaggc gctcgcccga aagctcacgg ccgagcggcg cgacgtggcc
     4801 ctgaacgtca acctcgacat ggtgagccgc agcgaccgcg gcgagcttta tgccgcgggc
     4861 gcacaccact acccacggct caggcctctg ctcgaacagg tggcggcgcg cgcccccgtc
     4921 aaactcctgc taggccacga ccggcccgag cagggcgacg acgactggac tacgcagtcg
     4981 gatcaagggg ccttccaccg gcggaagatt cccttcgtct atttcggcgt ggagaatcac
     5041 aaggactacc acaggccgac ggacgacttc gaggccgtaa accgcgactt cttcgtcaag
     5101 gccgccgaga cgatactaga cgccgtcgag actctgga
//
LOCUS       DASPKR010000435         2245 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_580545, whole genome shotgun sequence.
ACCESSION   DASPKR010000435 DASPKR010000000
VERSION     DASPKR010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2245)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2245
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580545"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1932)
                     /locus_tag="VD968_11705"
     CDS             complement(<1..1932)
                     /locus_tag="VD968_11705"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HYE15099.1"
                     /translation="MSFEKERLPDGTEFVAEEEGVREYRLSNGLKLLLVENRVAPVVT
                     FMVLYRVGSRNEAVGHTGATHLLEHMLFKGTPTFNRERRTQIAATLQRVGADYNATTW
                     YDRTNYFETVPSDALSLAVHLEADRMRNSFIADADRQSEMTVVRNELERGQNEPAMVL
                     DEAVYATAFREHPYHHPTIGWRADVENVPTARLKEFYDTFYHPNNATAIVVGDFDRAG
                     ALRLVAEHFGALPASPAPIPEVYTEEPRQEGERRVVVRRSGELPLVQVAFRTPAALGQ
                     AGVLSNAELAARAVSPPEGNDIYALSVLSALLSNGVTSRLYQALVETELAVSVDARVD
                     QFRDPGLFNVYATASPGVEPARVEEVILGEFERAPRDVGEVEVEKAKRQIAAAVAYER
                     DGTFNVAMQLSEAEAVADWRFYNSYARRVARVTAEDVRRVAAAYFTEDARTVGHFIPK
                     RPGANGSHGSNGGAPANSPSQARPARARRSWQFYRDPAEVYDAGGEEGPGGPRRSPSS
                     PSGAAAAGAVSRAARTELETGAVLLVIENTATPTVSVRGSLRAGSYFEGKERPGLARL
                     VAGMLERGTWRRTKIELAGDLERVGAQVDFSADPFAVQVVGRSLAGDFPLLLGALAEM
                     LREPSFPEDELEKLKQQTVA"
BASE COUNT          329 a          792 c          767 g          357 t
ORIGIN      
        1 cgcgaccgtc tgctgcttga gcttctccaa ctcgtcctca gggaacgaag gctcgcgcag
       61 catctcggcg agcgccccga gcagaagggg gaagtcgccc gcgagcgaac gcccgacgac
      121 ctggacggcg aaggggtctg cggaaaaatc aacctgagcg ccgacccgtt cgaggtcgcc
      181 cgcaagctca atcttcgtgc gccgccacgt cccccgctcg agcataccgg cgacgagccg
      241 cgcgaggcct ggccgctcct tcccctcgaa gtaagagccc gcgcggaggc tcccgcgcac
      301 cgagaccgtc ggcgtggccg tgttctcgat gacgagcagg acggcgcccg tctcaagctc
      361 agtccgcgcg gcgcgcgaca ccgccccggc cgcggcagcg cccgaaggcg aagagggcga
      421 gcggcgcggg ccgcccggcc cctcttcgcc gccggcgtcg tacacttcgg ccgggtcgcg
      481 gtaaaactgc cagctgcgcc tcgccctcgc ggggcgggcc tggctcgggc tgttggcggg
      541 cgcgccgccg tttgacccgt gcgacccatt cgcgcccggg cgcttcggta tgaagtggcc
      601 gaccgttcgc gcgtcctcag tgaagtaagc tgcggcgacg cgccgaacgt cttcggccgt
      661 cacgcgcgcg acccgcctcg cgtatgagtt gtagaagcgc cagtccgcga cggcctcggc
      721 ctcggacaac tgcatcgcga cgttgaaggt gccgtcccgc tcgtatgcga cggcggccgc
      781 tatctgccgc ttcgccttct cgacctcgac ctcgcccacg tcgcgcggcg cgcgctcgaa
      841 ctccccgagt atgacctcct cgaccctcgc gggctcgacg cccgggctcg ccgtcgcata
      901 gacgttgaag aggccggggt cgcggaactg gtcaacgcgc gcgtcaacgc tcaccgccag
      961 ctccgtctcg acgagcgcct ggtagagccg gctcgtcacg ccgttcgaca gaagcgccga
     1021 gagcaccgag agcgcgtaga tgtcgttccc ttcgggcggc gagacggctc gcgcggcgag
     1081 ctccgcgttc gacaggacac cggcctgccc cagcgcggcc ggcgtgcgga aggcgacctg
     1141 cacgagcggc agttcgccgg agcgccggac gaccacgcgc cgctcgccct cctgccgcgg
     1201 ctcctccgta tagacctcgg ggatgggcgc gggcgaggcc gggagcgcgc cgaagtgctc
     1261 cgcgactaag cgtagcgccc ccgcgcggtc gaagtctccg actacgatgg cggtcgcgtt
     1321 gttcgggtgg tagaaggtgt cgtagaactc cttgagccgg gcggtcggga cgttctccac
     1381 gtcggcgcgc cagccgatgg tcgggtggtg gtaggggtgc tcgcggaacg cggtggcata
     1441 gacggcctcg tccaagacca tcgccggctc gttctgcccg cgctccaatt cgttccgcac
     1501 gaccgtcatc tccgactgcc ggtcggcgtc ggctatgaac gagttgcgca tgcggtcggc
     1561 ttccaggtgg acggccaacg agagcgcgtc cgaagggacg gtctcgaagt agttcgtgcg
     1621 gtcgtaccag gtggtagcgt tgtagtcggc gccgacgcgc tggagcgtcg cggctatctg
     1681 cgtccgccgc tccctgttga aggtcggcgt ccccttgaac agcatgtgct ccaggaggtg
     1741 cgtcgcgccc gtgtggccca cggcctcgtt gcgcgagccc acgcggtaga gcaccatgaa
     1801 ggtgacgacc ggggcgacgc ggttctcgac gagaaggagc ttcaggccgt tcgacagcct
     1861 gtactccctt acgccctcct cctcggccac gaactccgtg ccgtcgggca aacgttcctt
     1921 ctcaaagctc aaatctcgct ctcctcggtc tcgcggctct ctggggttgt gtgggcgagg
     1981 ccatgctaac aaatcggcgc gcccgttggg aaaccgagcc gccgcttcgc gtgtctttgc
     2041 ggcgcaaagc acttgacagc gagcgccccc gcgtgtattt tgctcgcggc atggcagtcg
     2101 tcaacccttc cggcaagacg gtagaagaag agacgcccgc gctgcacgac cgcgcgatgg
     2161 acaacctccg cttcatacgc gaggcgatgg agcgggcctc gtccttcacg gccgtccccg
     2221 gctgggggca ggtcgtgatc gggct
//
LOCUS       DASPKR010000436        13330 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_451351, whole genome shotgun sequence.
ACCESSION   DASPKR010000436 DASPKR010000000
VERSION     DASPKR010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 13330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13330)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13330
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451351"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(7..3318)
                     /locus_tag="VD968_11710"
     CDS             complement(7..3318)
                     /locus_tag="VD968_11710"
                     /inference="COORDINATES: protein motif:HMM:NF027232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15100.1"
                     /translation="MALALPRAASARQAEAQAQQQPATAAAPARRQFGPLAYRQIGPF
                     RGGRVAAVAGVPTQPFVYYFGATGGGVWKTTDAGANWEPLGDGTFKTGSVGAIAVSES
                     DPNVIYVGMGEQTLRGNVSHGDGMYKSTDAGKTWKKAGLEDTRHISRVRVHPRNPDLV
                     YVAAIGHAFGPNEQRGVFRSKDGGKTWERVLYRGPLAGAIDLTFDPTNASILYASLWH
                     VIRRPWSMESGGPTSGLFKSTDGGDTWAELTRSPGMPRGVIGKIGVTVSPANPERVWA
                     MVEAEEGGVFRSENGGRTWARVNESRNLRQRAWYYTRIYADTQSPEIVYVLNVGFHKS
                     SDGGRTFAQVPTPHGDNHDLWIAPDDPARMIEGNDGGANVSLNGGRTWSEQDQPTAQF
                     YRVTVDNDFPYHIYGAQQDNSTVRIRSRSDDFGIGRDDWHDVGGGESGWIAPKPTDSN
                     IVFAGSYGGYLTRYDHRTRQLRAVNVWPDNPMGHGAEGMKYRFQWNYPILFSPHDPNT
                     LYAAGDHLFRSTNEGQSWEAISGDLTRNDKSKQGPSGGPITKDNTSVEYYDTIFSVAE
                     SPVTRGVIWAGTDDGLVHVTRDGGKNWVNVTPRGIPEWIQINSVEASPHEAGAAYVAA
                     TMYKHDDFRPYLYKTSDYGKTWKKIDAGIPDGSFTRVVREDPHRRGLLYAGTETGMFV
                     SFDDGERWQPFQLNLPHTPITDLAVHKRDRDLVVATQGRSFWVLDDLGVLHQLTDAQR
                     AGSGETALLKPEDAYRTRAGGAGTPLPPTVTLGANPAGGVVVYYYLKNRPTTDTTLEF
                     LDSAGKSIHKFTAKAPPRPSPTPTPEGGIAGQQGASTAPGSAQVQQPPEQPAAPSGEE
                     STQFAPGGGGPAGPRLAAETGLNRFVWDARYQDAARFPGLILWSGEMRGPRAVPGTYR
                     VRLTADGKSYEQEFEIRKDPRVQTTQEEFNRQFALLSKIRDKLTETHNAITQLREVRR
                     QVDDLLKRLADQPDARAVVEAGRALNARMTAVEEELYQTKNQSSQDPLNYPIRLNNKL
                     AALGGIVASADAAPTDQSYALYEELVTQIDARLQRLNQITTADLRAFNALVRSSDIPA
                     VIVKPPPGPAPPGGQ"
     gene            3554..4069
                     /locus_tag="VD968_11715"
     CDS             3554..4069
                     /locus_tag="VD968_11715"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE15101.1"
                     /translation="MGVVIRLETELTDEERRTLFEWGEDIFGVRDKQFRWRPKDWHFL
                     VEADGRVTTHVGVIKHTVRAGGREVTVGGIGGVVTVPEAQGNGLAQRAMRHAAEFMCD
                     ELQVEFGMLFCEDRLVPFYARLGWRKVEDEVEFEQEAGPVVSPFNVMVLPCGEGREWP
                     AGRVEIGGLPW"
     gene            4098..5453
                     /locus_tag="VD968_11720"
     CDS             4098..5453
                     /locus_tag="VD968_11720"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE15102.1"
                     /translation="MENRGAGQSGGRSRLPAALRALRHRNYRLFFGGQLISLTGTWMQ
                     SVALSWLVYRLTGSTVLLGLVSFCGQIPVFMLAPFGGTLADRRDRRRVLVLTQGAAMI
                     LAFALSALALTGVIQVWHVFVLAASLGVVNAFDIPTRQAFVVDMVGREDLVNAIALNS
                     STFNGARVVGPAVAGLLVAAIGEAWCFFANAVSYAAVIAGLLLMRVAVRRRGAQAGSA
                     LAGILEGFRFAGRTAPVRALLLLLGLVSLMGMPYAVLMPVFADRVLGGGASGLGLLMG
                     ASGLGALAGAVALAMRRGLSGLGRWVAFSSAGFGVSIILFSQSRSFWLSAALLVPAGF
                     SMMVQMASSNTLIQSMVPDELRGRVMAVYSMMFMGMAPLGALLAGTLARAAGAPATVA
                     AGGAACILGALVFGLRLPALGCEARQIIVAPQMTGGDPAEEVTADARPLAAGEATARA
                     R"
     gene            complement(5440..6783)
                     /locus_tag="VD968_11725"
     CDS             complement(5440..6783)
                     /locus_tag="VD968_11725"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HYE15103.1"
                     /translation="MFATSRRTSSHAKQDEVRDGRPRAGRKSGALARAPLYMLDRPAI
                     RLGGEKGGRAAAGAQFKLTVSRPGDAYEQEADRVADQVMRAPGPRVQRSCSCGGSCPK
                     CAAEHAEEAPGLVQTKRAEGAGTGAAPHAEVAHGSSGRPLDAGAREFMESRFGRDFGH
                     VRVHTDGAAEESARALDARAFTLGSDVFFAAGEYRPGAEDGRRLIAHELTHVLQQQRG
                     GDGATVHRWALGAAPAPLDWEVVTDPVHLRRLRQAEDIVRGVLTSRRCQNFFASGCRN
                     GNANSLQDSFDAANVYLRPFDDNIFGERTGTNIAFNLRAFRIGRFMMASTLLHEIFHT
                     CDPTAVQNTRELNSENAVEACRLHTPWIDTATPRRGAPGTRVTILGWGFGPVQGPADE
                     VLIGNVTAPVVSWDFTTDSSSRVQIVVEVPAGAGAGGLVVINNRVASNNVPFTVL"
     gene            6933..7580
                     /locus_tag="VD968_11730"
     CDS             6933..7580
                     /locus_tag="VD968_11730"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HYE15104.1"
                     /translation="MIRLTKSGPVIDGSDEEVGVLREQFERRHWIALPNFLDQALSQT
                     VRRKLDGAEFLAVEREIGSELRPADTSLYFAFELLLNSPEALRLVPRLTGCAPALSFS
                     GRIYRRLPGGAHFNRWHSDVTNGGRMVALSVNLSERPYEGGGTQLREAATGRVLCELA
                     NTGFGDAIMFRIDPSLEHRVMNVTGREPKTALAGWFRSKYDPESLFGRGPAKTAP"
     gene            7673..9247
                     /locus_tag="VD968_11735"
     CDS             7673..9247
                     /locus_tag="VD968_11735"
                     /inference="COORDINATES: protein motif:HMM:NF039907.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TldD/PmbA family protein"
                     /protein_id="HYE15105.1"
                     /translation="MTSSRRDFLRDVGLAFGAVTLPSWALESEAAAADLLTSEKSKLA
                     DAALSEAKRLGAAYADIRINRYRSEAITTRELQVQNVSRSQSFGFGVRVLVRGTWGFA
                     SSREVTEAEVRRVTGQAVEIARANAAYQRKPVRLVPAKRVTAKWRSHFERDPFDVAID
                     DKIQFLMRLNETALKTKGVSFVNSGLFFVNEQKFLATSDGSRIEQYIIRSFPNFNITA
                     VDRDRGDFQSRASYGGPSGVGYEYLTNYPWLTEAGQAAEEAVAKLKAKSVEPGKYDLV
                     LHPSHLWLTIHESVGHPTELDRALWWEANYAGTSFLTPDKTGKLQFGSKIVNFVADRV
                     QPSGLATVGYDDEGVPAQRWHLVRDGLFVDWQTTRDLAPLVGRKTSYGCLHADSWSSV
                     PFPRMPNVSLEPAKEPVSLDQLVGGVERGILIYGNGSYSIDQQRYNFQFGGQTFWEIK
                     NGKIAGMLRDVAYQSRTTDFWGACDALGGPQTYQLGGSFNDGKGEPGQSNAVSHGCPP
                     ARFRQINVLNTATQNA"
     gene            9259..10635
                     /locus_tag="VD968_11740"
     CDS             9259..10635
                     /locus_tag="VD968_11740"
                     /inference="COORDINATES: protein motif:HMM:NF039907.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TldD/PmbA family protein"
                     /protein_id="HYE15106.1"
                     /translation="MLQAANSPLLTESEARALTAKMLSFVKADDAQVNVNSQTFSHLR
                     FAANAFSTSGRRQNRTASVAVWVKDKDGMKRGAASTNELDEASLRRAVEEAETLARIS
                     PVDREYVPTVGPQVYKPTGGFAESAADVSVADRARRVSEIIAACERAGVVGAGFHQAG
                     GFAGAFATKAGSFAYQRSSNVALSMTTRTRDGSSSGYFLRSHFDAAKLDTERIARESI
                     RRALEGRDARPVEPGTYAVILEPQAVADLLSSFAFSFDARSAEEGRSPLSAPGGKTRR
                     GEKFFDERINVYSDPWHAELPGSMTAQGGLPAQKVYLVRNGVVENLVYSRFWAQRQAT
                     DPTPGPVNTIIEATGPTITTEEMIKNTDRGLLISRFWYIRSVDPRTQSLTGLTRDGVW
                     YIEGGKIKHAAKNLRFNQSIIRMLAPGNVEAVSAPERVSSSEGQNAALLPALKLKAFT
                     FTSQSEAV"
     gene            10650..11306
                     /locus_tag="VD968_11745"
     CDS             10650..11306
                     /locus_tag="VD968_11745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15107.1"
                     /translation="MNTSPAANLRRRAAGVSLVAAPLLLLASTVYRFGLGRNFEWYAT
                     MKLSFFFFAVGALGLVHLLRGRADGSSLVGGALTLAGCLSGASLTTAVLILMTIQEGG
                     LDPAALQTIERALNQFGGYRAIVLCPLPGPLFPAGLLILAVALWRKRVVPAWAALAFA
                     AGAILFPAGRAAGVVWAFWVCDVLLSVSLGYIGWHVLTMTAEEWERRPEARPEVVETV
                     "
     gene            complement(11338..11928)
                     /locus_tag="VD968_11750"
     CDS             complement(11338..11928)
                     /locus_tag="VD968_11750"
                     /inference="COORDINATES: protein motif:HMM:NF025426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4252 domain-containing protein"
                     /protein_id="HYE15108.1"
                     /translation="MKAIVYIVKRLAAAGLVAALCASAAAAQEERGRLRLDALDRLAP
                     QATETVRVEVDGGLVNFACALLSDSDPEERQVKEMCVGLKGVYVRGLKFREAGRPAEA
                     DVAALREQLRGWTQLVDISSRYDGLEQAEVYAASEGGRVRGLALLFINDQELKVINVV
                     GDVDLDKLRRLGATFNLPTIRIERKRRNVVKTKPQQ"
     gene            complement(11940..12539)
                     /locus_tag="VD968_11755"
     CDS             complement(11940..12539)
                     /locus_tag="VD968_11755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15109.1"
                     /translation="MSDYLWEKTGARDAEVERLERLLGAFGHRPRPLELPHDAAAPVP
                     AANAGRRFGAAHMAAAAAVLLAVLAGALAALVAARRGEGGRPTAAATQPATPAREVEQ
                     TLPPPPVARNEEPAPAGPRKFEAARRQRRPRVLAARGRGRVVGTAPHVEPDEAAQRLR
                     AKEQLVYALRLTGARLEEVRRRVQGEEGAESLGARGGTR"
     gene            complement(12536..13153)
                     /locus_tag="VD968_11760"
     CDS             complement(12536..13153)
                     /locus_tag="VD968_11760"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE15110.1"
                     /translation="MGQLRRMLEVETSSLFFRDEPCRPGGAGAAEASAASPEEALVAA
                     VRAGDRESFAGLYELYAPLVHGVLLARVPYGEVGDLVQEVFLTAFRKLDTLRDAARFG
                     PWVAMIARNRATDFHRRARETEELRDELAHTAGGPSAEAAEILELIRTLPEAYRETLV
                     LRLVEGMTGPEIAARTGLRPVSVRVNLHRGMKLLRARLEGRGRRR"
BASE COUNT         1862 a         4580 c         4697 g         2191 t
ORIGIN      
        1 cgcggctcac tggccgccgg gcggggcggg gccgggcggc ggcttgacga tgacggccgg
       61 gatgtcggag gagcgcacga gggcgttgaa ggcgcggagg tcggccgtcg ttatctggtt
      121 caggcgctgc aggcgcgcgt ctatctgcgt gacgagctcc tcgtagagcg cgtaggactg
      181 gtctgtgggc gcggcgtcgg cgctggcgac gatgccgccg agcgcggcga gcttgttgtt
      241 gaggcgtatc gggtagttga gcgggtcctg gctgctctgg ttcttggtct ggtaaagctc
      301 ctcctcgacg gccgtcatcc ttgcgttcag ggcgcggccg gcctcgacga ccgctctcgc
      361 gtcgggctgg tctgcgaggc gcttgaggag gtcgtcaacc tggcggcgaa cctcacggag
      421 ctgcgtgatg gcgttgtgcg tctcggtgag cttgtcgcgg attttcgaga gcagcgcgaa
      481 ctgccggttg aactcctcct gcgtggtctg cacgcgcggg tctttgcgta tctcgaactc
      541 ctgctcgtaa ctcttgccgt cggcggttag ccgcacgcgg taggtgccgg ggactgcgcg
      601 cgggccgcgc atctcccccg accagagaat gaggccgggg aagcgcgcgg cgtcctggta
      661 gcgcgcgtcc cagacgaagc ggttgaggcc cgtctccgcc gcgaggcgag gcccggcggg
      721 gccgcccccg cccggcgcga actgcgttga ctcttcgccc gaaggcgccg ccggctgctc
      781 gggcggctgc tgcacctgcg ccgagcccgg ggcggtcgaa gcgccctgct ggcccgcgat
      841 gccgccctcc ggcgtgggcg ttggcgaagg gcgcggcggc gccttagccg tgaacttgtg
      901 tattgacttg cccgcggagt cgaggaactc gagcgtcgtg tcggtcgtcg gcctgttctt
      961 caaatagtaa tagaccacga cgccgcccgc ggggttcgcg ccgagcgtga cggtcggcgg
     1021 cagcggcgtg ccggcaccgc cggcccgcgt gcggtaggcg tcctcgggct tgagcagcgc
     1081 cgtctcgcct gagcccgcgc gctgcgcgtc ggtcagctgg tgcagcacgc cgaggtcgtc
     1141 cagaacccag aaggagcgcc cctgtgtcgc cacgaccaag tccctgtcgc gcttgtgcac
     1201 ggcgaggtct gtgatgggcg tgtgcgggag gtttagctgg aagggctgcc agcgctcgcc
     1261 gtcgtcgaag gagacgaaca tgcccgtctc agtccccgcg tagagcaggc cgcggcggtg
     1321 cgggtcttcg cgcacaacgc gcgtgaaaga gccgtcgggg atgcctgcgt caatcttctt
     1381 ccaggtcttg ccgtagtccg aggtcttgta gaggtacggg cggaagtcgt cgtgcttgta
     1441 catggtggcg gcgacgtagg ccgcgcccgc ctcgtgcggc gaagcctcga cggagtttat
     1501 ctgaatccac tcggggatgc cgcgcggcgt gacgttcacc cagttcttgc cgccgtcgcg
     1561 cgtcacgtgc acgaggccgt cgtccgtgcc ggcccagatg acgccgcgcg tgacgggcga
     1621 ctcggcgacg ctgaatatcg tgtcgtagta ctcgacgctc gtgttgtcct tcgtgatggg
     1681 gccgcccgaa ggcccctgct tcgacttgtc gttgcgcgtg aggtcgccgg agatcgcctc
     1741 ccaagactgc ccctcgttcg tcgagcggaa gaggtggtcg cccgcggcgt acaaggtgtt
     1801 cgggtcgtgc ggcgagaaca ggatggggta gttccactgg aagcggtact tcatgccctc
     1861 ggcgccgtgg cccatggggt tgtcgggcca gacgttgacg gcgcgcagtt ggcgggtgcg
     1921 gtggtcgtag cgcgtaaggt agccgccgta ggagcctgcg aagactatgt tggagtcggt
     1981 cggcttcggc gctatccagc cggactcgcc gcctccaacg tcgtgccagt cgtcgcggcc
     2041 tatgccgaag tcgtcggagc ggctgcgaat cctgacggtc gagttgtcct gctgcgcgcc
     2101 gtagatgtgg taggggaagt cgttgtcaac ggtcacgcgg tagaactgcg cggtgggctg
     2161 atcctgttcg ctccacgtgc ggccgccgtt cagggagacg ttcgcgccgc cgtcgtttcc
     2221 ctctatcatg cgcgcggggt cgtccggcgc tatccagagg tcgtggttgt cgccgtgcgg
     2281 ggtggggact tgcgcgaacg tgcggccgcc gtcgctcgac ttgtggaagc ctacgttaag
     2341 gacatagacg atctcggggc tctgcgtgtc tgcgtagatg cgcgtgtagt accaggcgcg
     2401 ctggcgaagg ttccgcgact cgttgacgcg cgcccaggtg cgcccgccgt tctcggagcg
     2461 gaacactccg ccctcctcgg cctcgaccat cgcccagact ctttcggggt tcgcgggcga
     2521 gaccgtgacc cctatcttgc cgatgacgcc gcgcggcatg ccggggcttc tcgtcagctc
     2581 cgcccacgtg tcgccgccgt ccgttgactt gaagaggccg ctcgtggggc cgcccgactc
     2641 cattgaccac gggcggcgga tgacgtgcca gagcgaggcg tagagtatgc tggcgttcgt
     2701 cgggtcgaag gtgaggtcaa tcgcgcctgc aagcggcccg cggtagagga cgcgctccca
     2761 agtcttgccc ccgtccttcg agcggaagac gccgcgctgc tcgttggggc cgaaggcgtg
     2821 gccgatggcc gcgacgtaaa cgaggtcggg gttgcgtggg tgcacgcgca cgcgcgagat
     2881 gtggcgagtg tcttcgagcc ccgccttctt ccaggtcttg ccggcgtcgg ttgacttgta
     2941 catgccgtcg ccgtgcgaga cgttgccgcg cagcgtctgc tctcccatgc cgacgtagat
     3001 gacgttcggg tcgctttcgg agacggcgat ggcgccgacg gagcccgtct tgaacgtgcc
     3061 gtcgccgaga ggctcccagt tcgcgcccgc gtccgtagtc ttccagacgc cgccgcccgt
     3121 cgcgccgaag taatagacga agggctgagt cggcacgccc gccacggccg ccacgcgccc
     3181 gccgcggaac ggccctatct gccggtaggc gagcggcccg aactgacgcc tcgccggggc
     3241 cgcggcggtc gccggctgct gctgcgcctg agcttcggcc tggcgggcgg acgccgcccg
     3301 cggcagggcg agagccaaca cgcatgcggc cagacagaga gacagggggg ctgcgagtct
     3361 ttgcgggaga aggcccacgc ttttcatctg gaaggctcct tcggtttttt cgtttgcttt
     3421 cggaaaggcg tcgcggtaaa gcccggtgcg tggccgacac tatatgggct tttagattcg
     3481 agggcaaacc ggggctcgcg gcggcggccg gtttgcggtt aggattacgg gcggtggcga
     3541 gaggttgaag gctatgggag tcgtgataag gctcgagacc gagctgaccg acgaggagcg
     3601 gcgcacgctc ttcgagtggg gcgaggacat cttcggcgtc cgcgacaagc agttccgctg
     3661 gcgcccgaag gactggcact tcctcgtcga ggcagacggg cgcgtcacca cgcacgtcgg
     3721 cgtcataaag cacaccgtcc gagccggggg ccgggaggtc acggtcggag gcatcggcgg
     3781 cgtcgtcacg gtgccggaag cgcagggcaa cggcctcgca cagcgcgcca tgcgccacgc
     3841 ggcagagttc atgtgcgacg agctgcaagt cgagttcggc atgctcttct gcgaagaccg
     3901 gctcgtcccc ttctacgcgc ggctgggctg gcgcaaagtc gaggacgagg tagagttcga
     3961 gcaggaggcc ggcccagtcg tctcgccctt caacgtcatg gtgctgccgt gcggcgaagg
     4021 gcgcgagtgg ccggcgggcc gcgtcgagat cggcgggctg ccctggtgag cgttcgcgaa
     4081 caagcgggga gacggggatg gagaatcgtg gcgcgggcca gtcgggcggc cgttcgagac
     4141 tcccggctgc ccttcgcgcg ctcaggcaca ggaactacag gctcttcttc ggcgggcagc
     4201 tcataagcct gacggggacg tggatgcagt cggtcgcgct ctcctggctg gtctatcggc
     4261 tgacgggctc gacggtgctg ctcgggctcg tgagcttctg cgggcagatc cccgtcttca
     4321 tgctcgcgcc cttcggcggg acgctggcag accgccgcga ccgccgccgc gtgctcgtgc
     4381 tcacgcaagg ggcggcgatg atcctggcct tcgcgctctc ggcgctcgcg ctcaccggcg
     4441 tcatacaggt ctggcacgtc ttcgtgctgg cggcctcact cggcgtggtc aacgccttcg
     4501 acatccccac ccgccaggct ttcgtagttg acatggtcgg gcgcgaagac cttgtgaacg
     4561 ccatcgcgct caactcctcg acgttcaacg gcgcgcgcgt cgtggggccc gcggtggcgg
     4621 gcctgctcgt cgccgcgata ggcgaggcgt ggtgcttctt cgccaacgcc gttagctacg
     4681 ctgccgtcat cgccggcctg ctgctgatgc gcgtcgccgt gcgcaggagg ggggcgcagg
     4741 cgggctctgc gctcgcgggc atactcgaag gcttccgctt cgcggggcgg acggcgcccg
     4801 tgcgcgcgct gctccttctg ctcgggctcg tgagtttgat gggcatgcca tacgccgtgc
     4861 tgatgcctgt cttcgcagac cgggttctgg ggggcggcgc gagcgggctc gggcttttga
     4921 tgggcgcgtc gggcttgggc gcgctcgcgg gcgcggtcgc gctcgcgatg aggcggggct
     4981 taagcgggct gggccgctgg gtcgccttct cgtcggcggg cttcggcgtg agcataatcc
     5041 tcttctcgca gtcgcgctcg ttctggctgt cggcggcgct gctcgtcccc gccggcttct
     5101 cgatgatggt gcagatggcc tcgtcgaaca cgctcataca gtcaatggtg ccggacgagt
     5161 tgcgcgggcg ggtgatggcc gtctattcga tgatgttcat ggggatggcg ccgctgggcg
     5221 cgctcctggc cgggacgctc gcgcgcgccg caggcgcccc ggccaccgtc gccgcgggcg
     5281 gagcggcctg catactcggc gcgctcgtgt tcgggctgcg gctgcccgcg ctcgggtgcg
     5341 aggcgcgcca gataatcgtg gcgccccaga tgacgggcgg cgacccggcc gaggaggtga
     5401 cggccgacgc ccggccgctc gccgccggcg aggctaccgc tagagcacgg tgaaaggcac
     5461 gttgttgcta gcgactcggt tgttgatgac gactaggccg cccgcccccg cgcccgccgg
     5521 gacttcgacg acgatctgca cgcgtgacga ggagtcggtt gtgaagtccc agctcaccac
     5581 cggcgccgtc acgttcccta tcagcacctc gtcggcaggc ccctgcacgg ggccgaagcc
     5641 ccagccgagg atggtcaccc gcgtgccggg ggcgccgcgg cgcggcgtgg cggtgtctat
     5701 ccaaggcgta tgcaggcggc acgcctcgac ggcgttctcc gagttcagct cccgcgtgtt
     5761 ctggactgcc gtcgggtcgc aggtgtggaa gatttcgtgc agcagcgtgg aggccatcat
     5821 gaagcgcccg atgcggaacg cccggaggtt gaacgcgatg ttcgtgcctg tgcgctcgcc
     5881 gaatatgttg tcgtcgaacg ggcgcaggta aacgttcgcc gcgtcgaagg agtcctgtag
     5941 cgaattggcg ttgccgttcc ggcacccgct ggcgaaaaag ttctggcagc gccggctggt
     6001 caacactccg cgcacgatgt cctccgcctg gcgcaggcgg cgcaggtgca cggggtctgt
     6061 caccacctcc cagtcgagcg gcgctggggc ggcgccgagc gcccagcggt gcacggtcgc
     6121 gccgtcgccg ccgcgctgtt gctgtaggac gtgcgtcagt tcgtgcgcga tgaggcggcg
     6181 gccgtcctcg gcgccgggcc ggtactcgcc cgcggcgaag aacacgtcgc tcccgagcgt
     6241 gaaggcgcgg gcgtcgaggg cgcgggccga ctcctcggcc gcgccgtccg tgtggacgcg
     6301 cacgtggccg aagtcccggc cgaagcgcga ctccatgaac tccctcgccc ccgcgtcgag
     6361 ggggcgccca gacgagccgt gcgcgacttc cgcgtgcggc gctgcgcccg tgccggcgcc
     6421 ctccgcgcgc ttcgtctgca cgagccccgg agcctcttcg gcgtgctcgg cggcgcactt
     6481 cgggcaactg ccgccgcacg agcacgagcg ctgaacccgc ggccccggcg cgcgcatcac
     6541 ttggtcggcg acgcggtcgg cctcctgctc gtaggcgtcg ccgggccggc tgactgtgag
     6601 cttgaattgg gccccggcgg cggcgcggcc gcccttctcg cccccgaggc ggatcgcagg
     6661 gcggtcgagc atgtagagcg gcgcgcgagc tagcgccccg ctcttccgcc cggcgcgggg
     6721 gcggccgtca cggacttcat cctgtttcgc gtgagatgat gtcctgcgcg acgtggcgaa
     6781 catgcgcggc gctcctttcc gtgcggcgtg ccgtcgaggg ggcgtgaggg ggcttgcgaa
     6841 ttgtcgcgag gttaacgctt cgaggcgcgt tgaagataag tctgcttatt ctggttgtca
     6901 ataaaaaata aaaaccgcgc ggcggggtgg aaatgatacg tctgaccaaa tcaggcccgg
     6961 tgattgacgg ctccgacgaa gaggtcggag tgctgcgcga gcagttcgag cggcgccact
     7021 ggattgcgct gccaaacttc ctcgaccagg cgctctcgca gaccgtgcgg cgcaagctcg
     7081 acggcgccga gttcctcgcg gtcgagcgcg agataggctc ggagctgcgg ccggccgaca
     7141 catcgctcta cttcgccttc gagcttctgc tcaacagccc ggaagccctc cgcctcgtcc
     7201 cgcgcctgac ggggtgcgcg cccgcgctct ccttcagcgg ccgcatctac cggcggctgc
     7261 ccggcggcgc gcacttcaac cgctggcact ccgacgtgac gaatggcggg cgcatggtcg
     7321 ccctgagcgt caacctgagc gagcggccct acgaaggcgg cggcacgcaa ctgcgcgagg
     7381 ccgcgacggg gcgcgtgctc tgcgagctcg ccaacacggg cttcggcgac gcgatcatgt
     7441 tccgcattga cccctcgctg gagcaccggg tgatgaacgt gacgggccgc gagcccaaga
     7501 cggcgctcgc cggctggttc cgctcaaaat atgaccccga gtcgctcttc ggccgcgggc
     7561 cggcgaaaac ggccccctga gcgcccgcct tttttattga catttacgat tcatatatta
     7621 gagttgcggc cacccgcagt tagaacccct tacccgttcg cagagggccg acatgacatc
     7681 ttcgcggcgc gactttttga gggacgtggg gctcgcgttc ggcgcggtga cgctgccgtc
     7741 gtgggctctg gagtcagagg cggccgcggc cgacctgctc acctcggaga agagcaagct
     7801 cgccgacgcg gcgctctctg aggcgaagcg gctcggcgcc gcctacgccg acatacgcat
     7861 caaccgctac cgctccgagg cgataactac gcgcgagcta caggtgcaga acgtctcgcg
     7921 ctcgcagagc ttcggcttcg gcgtgcgcgt gctcgtgcgc ggcacctggg gcttcgcttc
     7981 gagccgagaa gtcaccgaag ccgaggtgcg gcgcgtcacc gggcaggccg tcgagattgc
     8041 gcgggcgaac gccgcctacc agcgaaagcc cgtccggctc gtccccgcca agcgcgtcac
     8101 ggcaaagtgg cgcagccact tcgagcgcga cccgttcgac gttgcgattg acgacaagat
     8161 tcagttcctc atgcgcctca acgagacggc gctgaagacg aagggcgtga gcttcgtcaa
     8221 cagcggcctc ttcttcgtca acgagcagaa gttcctcgcc acctccgacg gctcgcgcat
     8281 agagcagtac atcatccgca gcttccccaa cttcaacatc acggccgttg accgcgaccg
     8341 cggagacttc cagtcgcgcg cctcgtacgg cggcccctcc ggcgtaggct acgagtattt
     8401 gacgaactac ccctggctca cggaggcggg gcaggccgcc gaagaggccg tcgcgaaact
     8461 caaggccaag tcggtcgagc cgggcaagta cgacctggtt ctgcacccct ctcacttgtg
     8521 gctcaccatt cacgagtcgg tcggccaccc cacggaactc gaccgcgctc tctggtggga
     8581 ggccaactac gccggcacga gcttcctcac gccggacaag acgggcaagc tccagttcgg
     8641 ctcgaagatc gtcaacttcg tagcagaccg tgtgcagccc tcgggcctgg ccaccgtcgg
     8701 ctacgacgac gagggcgtgc ctgcgcagcg ctggcacctc gtgcgcgacg gcctcttcgt
     8761 tgactggcag acgacgcgcg acctagcgcc cctcgtcggg cgcaaaactt cctacggctg
     8821 cctgcacgcc gactcctggt cgagcgtgcc gttcccgcgc atgccgaacg tctctctgga
     8881 gccggcgaag gagccggtct cgctcgacca gttggtgggc ggcgtcgagc gcgggattct
     8941 gatttacggg aacggcagct actcgattga ccagcagcgc tacaacttcc agttcggcgg
     9001 tcagaccttc tgggagataa agaacgggaa gatcgcgggg atgctcaggg acgtggccta
     9061 ccagtcgcgc acgaccgact tctggggcgc gtgcgacgcg ctcggcggcc cgcagaccta
     9121 ccagctcggc ggcagcttca acgacggcaa gggcgagccg ggtcagtcga acgccgtctc
     9181 gcacggctgc ccgcccgcgc gcttccgcca gattaacgtc ctcaacaccg cgacccagaa
     9241 cgcataggag tgattgggat gcttcaagcc gcgaacagcc ctctgctgac cgagtccgag
     9301 gcgcgcgcgc tcaccgcgaa gatgctctcg ttcgtcaagg ccgacgacgc gcaggtcaac
     9361 gtcaacagtc agaccttctc gcacctgcgc ttcgccgcca acgccttctc gaccagcggc
     9421 cggcgccaga accgcaccgc ctccgtcgcc gtctgggtta aagacaagga cggcatgaag
     9481 cgcggcgccg cctcgaccaa cgagttggac gaagcctcgc tgcgccgcgc cgtcgaggag
     9541 gccgagacgc tcgcgcgcat ctcgccggtg gaccgggagt acgtgccgac cgtcgggccg
     9601 caggtttaca agccgacggg cggcttcgcc gagtcggccg ccgacgtctc ggtcgcggac
     9661 cgcgcgcgcc gcgtcagcga gatcatcgcg gcctgcgaga gggcgggcgt cgtcggcgcc
     9721 ggcttccacc aggcgggcgg cttcgccggc gccttcgcca cgaaggccgg cagcttcgcc
     9781 taccagcgct cgtcgaacgt cgcgctctcg atgacgacgc ggacgcgcga cgggtcgtct
     9841 tccggctact tcctccgcag ccacttcgac gccgccaaac tcgacaccga gcgcatcgcg
     9901 cgcgagtcca tccgccgcgc gctcgaaggg cgcgacgccc gcccggtcga gcccggcacc
     9961 tacgccgtca tcctggagcc gcaggcggtc gccgacctcc tgtcctcttt cgccttcagc
    10021 ttcgacgcgc gcagcgccga ggaggggcgc agcccgctct ccgcgcccgg cggcaagacg
    10081 cgccgcggcg agaagttctt cgacgagcgc atcaacgtct acagcgaccc gtggcacgcc
    10141 gagctgcccg gctcgatgac ggcgcagggc gggctgcccg cgcagaaggt ctacctggtg
    10201 cgcaacggcg tcgtcgagaa cctcgtctac tcgcgcttct gggcgcagcg ccaggcgacc
    10261 gacccgacgc ccggccccgt caacactatc atcgaggcga cggggccgac gataaccacc
    10321 gaggagatga tcaaaaacac cgaccgcggc ctgctcatca gccgcttctg gtacatccgc
    10381 tccgttgacc cgcgcacgca gagcctgacg ggcctgacgc gcgacggcgt ctggtacatc
    10441 gagggcggga agattaagca cgcggcgaag aatctgcgct tcaaccagag catcatccgc
    10501 atgctcgcgc ccggcaacgt cgaggccgtc tccgcccccg aacgcgtcag cagcagcgag
    10561 gggcagaacg ccgccctcct gcccgccctc aagctcaaag ccttcacctt cacctcgcag
    10621 tccgaagcag tctgatggag gttgcccaga tgaacacttc gcccgccgcg aacctgcgac
    10681 ggagggccgc gggcgtgagc ctcgtcgccg cgccgctgct gctgctggct tcgaccgtct
    10741 accgcttcgg cctcggccgc aacttcgagt ggtacgcaac gatgaagctc tccttcttct
    10801 tcttcgccgt cggcgcgctc gggctggtgc acctgctgcg gggtcgggcc gacggctcct
    10861 cgcttgtcgg cggcgccctc acgctcgctg gctgcctctc gggcgcgagc ctcacgacgg
    10921 ccgtcctcat cctgatgacg atccaggagg gcgggctcga cccggccgcg ctgcaaacaa
    10981 tcgagcgcgc gctcaaccag ttcggcggct accgcgccat cgtcctgtgc ccgctgccgg
    11041 ggccgctctt ccccgccggg ctgctgatcc tggccgtggc cctctggcgc aagcgcgtcg
    11101 tgccggcgtg ggccgcgctg gccttcgccg ccggggcgat cctcttcccc gcgggccgcg
    11161 ccgccggcgt cgtctgggcc ttctgggtct gcgacgtgct gctcagcgtc tcgctcggct
    11221 acatcggctg gcacgtcctg acgatgaccg ccgaggagtg ggagcgacgc ccggaggcgc
    11281 gccccgaggt ggtcgagacc gtctgacaga ggcgcgagcg gcggcgagcg gccctgttta
    11341 ctgctgtggt ttggtcttga cgacgttgcg gcgcttgcgc tcgatgcgga ttgtcggaag
    11401 gttgaaggtg gcgccgaggc gccgcagctt gtcgaggtca acgtcgccga cgacgttgat
    11461 gactttcagc tcctgatcgt ttatgaagag gagggcgagc ccccggacgc gcccgccctc
    11521 actcgcggcg tagacctcgg cctgctccag cccgtcgtac cggctgctga tgtccactag
    11581 ttgcgtccag ccgcgcagtt gctcgcgcag ggcggccacg tccgcctcgg ccggccgccc
    11641 cgcctccctg aacttcagcc cgcggacgta gacgcctttg agcccgacgc acatctcctt
    11701 gacctgccgc tcctcggggt cgctgtcgga gaggagcgcg caggcgaagt tgacgaggcc
    11761 gccgtcaacc tcgacgcgga cggtctcggt ggcctgcggc gcgaggcggt cgagggcgtc
    11821 gagccgcagg cggccgcgct cctcctgcgc cgccgcggcc gacgcgcaga gcgcggcgac
    11881 gagcccggcc gccgccagac gtttgacgat gtagacgatt gctttcataa acgctccgtt
    11941 cacctggttc cgccccgcgc cccgaggctc tctgcaccct cttcgccctg cacgcggcgc
    12001 cgcacctctt cgagtctcgc ccccgtcagg cgcagcgcgt agacgagctg ctctttcgcc
    12061 cgcagcctct gcgcggcttc gtcgggctcg acgtgcggcg cggtgccgac cacgcgcccg
    12121 cgcccgcgag ccgcgagaac gcgcggccga cgctgcctac gcgccgcctc aaacttccgc
    12181 ggccccgccg gcgcgggctc ctcgtttcgc gcgacgggcg gcggcgggag tgtttgttcg
    12241 acctcgcgcg cgggcgtcgc cggctgcgtt gcggccgcgg tcggccgtcc gccttcgccg
    12301 cgccgcgccg cgacgagcgc cgcgagcgcg cccgcgagca cggcgagcag gacggcggcg
    12361 gccgcggcca tgtgcgccgc gccgaagcgt cgcccggcgt tcgcggccgg gaccggcgcg
    12421 gccgcgtcgt gcggcagttc gagcgggcgc gggcggtggc cgaaggcgcc gagcagtcgt
    12481 tcgagccgct cgacctcggc gtcgcgcgcg cccgtctttt cccagaggta gtcgctcatc
    12541 gcctacgccc tctcccttcg agccgcgcgc gcaggagctt catcccgcgg tgcaggttga
    12601 cgcgcaccga gacggggcgc agacccgtgc gcgcggcgat ctccggcccg gtcatgccct
    12661 cgacgagccg cagcaccaga gtctcgcggt acgcctcggg cagcgtccgg atcaactcta
    12721 aaatctccgc ggcctcggcc gaaggcccgc ccgccgtgtg cgccagctcg tcgcgcagct
    12781 cctcggtctc gcgtgcgcgg cggtggaagt ccgtcgcgcg gttgcgcgcg atcatcgcca
    12841 cccacgggcc gaagcgcgcc gcgtcgcgca gcgtgtcgag cttgcggaag gcggtgagga
    12901 agacctcctg cacgaggtcg ccgacctcgc cgtagggcac gcgcgccagc aggacgccgt
    12961 gcaccaacgg cgcgtagagt tcgtaaagcc ccgcgaacga ctcgcggtcg cccgcgcgca
    13021 cggccgcgac gagcgcctcc tccggcgacg cggcagacgc ctcggccgcc ccggccccgc
    13081 ccggccggca cggctcgtcc ctgaaaaaca ggctgctcgt ctcgacttcc agcatgcgtc
    13141 ggagttgtcc caccgcgccc ttccgaccgt aagacgcccg cccgccgggg aacgttaaca
    13201 gggtcgtaga ttttgatttg aaatcgaaaa ccgcaaagcg aaaatcatct gacgaagccc
    13261 gcggcggcga ggtagtcgag gacgagggcg gcgttctcct cggcggagcg ggcggccgag
    13321 tcgaggcgga
//
LOCUS       DASPKR010000437         3076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_707078, whole genome shotgun sequence.
ACCESSION   DASPKR010000437 DASPKR010000000
VERSION     DASPKR010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3076)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3076
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_707078"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2997
                     /locus_tag="VD968_11765"
     CDS             <1..2997
                     /locus_tag="VD968_11765"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYE15111.1"
                     /translation="NLIAGDLPETAEDPVILKLDTDAAPVLRLAVSANKPLREVTDIA
                     DKEIKERVESINGVGSVTIVGGSTREIHVWIDPDKMRAFNVTVPEVVAAIRQQNMEVP
                     GGRVDEGTRELTVRTMGRITNPADFNHVAVGNRGGYAVKISDIGYVEDGTEEQRTSAR
                     LNGQPAVTLVVSKQSGQNSVEVADAIKERLKELEPGLKKKGVRTQIVGDTSIFIKAAV
                     ESIQTHLVEGGLLAALVVFLFLWNVRSTLIAALAIPTSIIATFGLMAALDYTLNQITM
                     LALTLMVGIVIDDAIVVLENIFRFVEEKGMPPFQAAIEGTREIGLAVMATTLSLLAVF
                     IPVGFMGGMVGRFMSSFGLTASFAIAVSLVVSFTLTPMLAARLIKRREAGEGPGTGAV
                     PSEGDAPAGLADESKIEAGSPVPVSESQQTAEGEERSAPEPERVGRGRRELRPRRTSK
                     ESRWYRPVDRTYTAMLRWAMAHRWAVVVLCVVVTLSIVPLFMLVGKNFLPVDDQSQFE
                     VNVRTPEGSTLAATSAVVEKIAADIKRELPGVTDTLVTIGGGQQQLVNEANIYVKLTD
                     IAAREKSQVQLMEGARDLLARYPKELRTNVGQVQAISGGGFRNADIQFVIGGPDLQKL
                     TEYSEALLAKMKSIPEVVDADSSLIVGKPEVRVRIDRARAADLGVRVGDIAQALNVLV
                     AGQDVTTYNEGTDQYDVRVRAVGQARTRPEALSNLFVQSSKTGWTNLSNLVVLEEGTG
                     PSAIDRLNRQRQVTLTANVRSGGSQAAVIEQMNRFVQEVGVDPAYSTGLAGRSKELGR
                     AGYYFMLAFVLSFVFMYMVLAAQFESFIHPVTILLTLPLAIPFGIFSILVMGQTVNIF
                     SGLGLLLLFGVVKKNAILQIDHTNELRSQGMERLEAIVQANRDRLRPILMTTVALVAG
                     MMPLVVSTGPGSGTNRSIGVLVVGGQTLCLLLTLLAVPVFYSLFDDIGHSRVWGRIGS
                     WAVAPFAWARRRAATAAQSFFGMFGR"
BASE COUNT          517 a         1043 c         1018 g          498 t
ORIGIN      
        1 aacctcatcg cgggcgacct ccccgaaacg gccgaagacc ccgtcatcct caagctcgac
       61 accgacgccg cgcccgtttt gcgcctcgcc gtctcggcca acaagcccct gcgcgaagtc
      121 accgacatcg ccgacaagga gatcaaggag cgcgtcgagt ccattaacgg cgtcgggagc
      181 gtgaccatcg tcggcggctc gacgcgcgag atacacgtct ggatcgaccc ggacaagatg
      241 cgcgccttca acgtcaccgt gccggaagtc gtggccgcca tccgccagca gaacatggaa
      301 gtgccgggcg gccgcgttga cgagggcacg cgcgagctga ccgtccgcac gatggggcgc
      361 atcacgaacc ctgccgactt caaccacgtc gccgtcggca accggggcgg ctacgccgtg
      421 aaaatctccg acatcgggta cgtcgaggac ggcacggagg agcagcgaac ctccgcccgg
      481 ctgaacgggc agccggccgt cacgctcgtc gtctcgaagc agtcggggca gaactccgtc
      541 gaggtggccg acgccatcaa ggagcggcta aaggaactgg agcccggcct gaagaagaag
      601 ggggttcgca cgcagatagt cggcgacacc tccatcttca tcaaggcggc ggtcgagagc
      661 atacagacgc acctcgtcga gggcgggctc ctggccgcgc tcgtcgtctt cctcttcctc
      721 tggaacgtcc gctcgactct gatcgcggcc ttagccatac cgacctccat catcgccacc
      781 ttcgggctga tggcggcgct cgactacacg ctgaaccaga taacgatgct cgcgctgacg
      841 ctgatggtgg gcatcgtgat tgacgacgcg atagtagtcc tcgagaacat cttccgcttc
      901 gtagaggaga aggggatgcc gcccttccag gcggcaatcg aaggcacgcg cgagataggc
      961 cttgccgtca tggcgacgac gctctcgctc ctcgccgtct tcattcccgt cggctttatg
     1021 ggcggcatgg tgggccgctt catgtcctcg ttcggcctga cggcctcctt cgcaatcgcc
     1081 gtcagcctcg tcgtctcgtt cacgctgacg cccatgctcg ccgcgcgcct gattaagcgg
     1141 cgcgaggcgg gggaggggcc ggggacgggc gctgttccca gcgagggcga cgcgcccgcc
     1201 gggctcgccg acgagtcgaa gatcgaggcc ggctcgcccg tgcccgtgtc ggagtcgcag
     1261 cagacggccg agggcgagga gcgctcggcg ccggagcccg agcgcgtcgg ccgcgggcgg
     1321 cgggagctgc gcccgcggcg aacgtcgaag gagtcgcgct ggtatcgccc cgttgaccga
     1381 acctacacgg cgatgctcag gtgggcgatg gcgcaccgct gggccgtcgt cgtgctgtgc
     1441 gtcgtcgtga ccctgagcat cgtgccgctc ttcatgctcg tcggcaagaa cttcctgccc
     1501 gtggacgacc agtcgcagtt cgaggtgaac gtccgcacgc ccgagggctc gacgctcgcc
     1561 gccacgtcgg ccgtggtgga gaagattgcg gccgacataa agcgcgagct tccgggcgtc
     1621 acggacacgc tcgtgaccat cggcggcggc cagcagcagc tcgtcaacga ggccaacatc
     1681 tacgtcaagc tcaccgacat agccgcgcgc gagaagtcgc aggtgcagtt gatggagggc
     1741 gcgcgcgacc tgctcgccag gtacccgaag gagcttcgca cgaacgtcgg gcaggtgcag
     1801 gccatctcgg gcggcggctt ccgcaacgcc gacatacagt tcgtaatcgg cggccccgac
     1861 cttcagaagc tcacggaata ctccgaggcg ctgctcgcga agatgaagag catccccgaa
     1921 gtggttgacg ccgactcctc gctcatcgtc ggcaagcccg aggttcgagt ccggatagac
     1981 cgcgcgcgcg cggccgacct gggcgtgcgc gtcggcgaca tagcgcaggc cctcaacgtc
     2041 ctcgtcgccg ggcaggatgt gacgacctac aatgaaggca cagaccagta cgacgtgcgc
     2101 gtgcgcgccg tcgggcaggc gcgcacgcgc cccgaggcgc tctcgaacct cttcgttcag
     2161 tcgtcgaaga cgggctggac gaacctctcc aacctcgtcg tgctcgaaga agggacgggc
     2221 ccgtcggcca tagaccgcct caaccggcag cggcaggtga cgctcacggc gaacgtccgc
     2281 tcgggcggct cgcaggccgc cgtcatcgag cagatgaacc ggttcgtgca ggaggtgggc
     2341 gttgacccgg cgtacagcac cggcctggcc ggccgctcga aggagctggg ccgggcgggc
     2401 tactacttca tgctggcctt cgtgctctcc ttcgtcttca tgtacatggt gctggcggcg
     2461 cagttcgagt cgttcataca ccccgtcacg atactgctca cgctcccgct cgccatcccg
     2521 ttcggcatct tctccatact cgtcatgggg cagaccgtga acatcttctc cgggctcggc
     2581 ctgctgctcc tcttcggcgt ggtcaagaag aacgcgatct tgcagataga ccacactaac
     2641 gagctgcggt cgcaggggat ggagcgcctc gaggcaatcg tgcaggcgaa ccgcgaccgc
     2701 ctgcggccga tccttatgac gacggtggcg ctcgtggccg gcatgatgcc gctggtggtc
     2761 tcgacggggc cgggctccgg gacgaaccgc tcgattggcg tcctcgtcgt cggcgggcag
     2821 acgctctgcc tgctgctcac gctgctcgcc gtccccgtct tctactcgct cttcgacgac
     2881 atcggccaca gccgcgtctg gggccgcata ggctcctggg ccgtcgcgcc cttcgcgtgg
     2941 gcgcgcaggc gcgccgccac ggccgcgcag tcgttcttcg ggatgttcgg caggtaaaga
     3001 acaagggtta tgcacaaacg cactcatgaa tcgttgaagg gactggcggc tgcggcgctc
     3061 ctcgcgtgct cgctgg
//
LOCUS       DASPKR010000438        10769 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1229092, whole genome shotgun sequence.
ACCESSION   DASPKR010000438 DASPKR010000000
VERSION     DASPKR010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10769)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10769
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1229092"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..437)
                     /locus_tag="VD968_11770"
     CDS             complement(<1..437)
                     /locus_tag="VD968_11770"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HYE15112.1"
                     /translation="MSPRKLTRLLLPLALVAAAAPAQPQRRHAPAPRRAESPIERRID
                     ALLARMTLEEKLGQLQQLDGHADGRYREEHLELARKGLLGSTLNVRGVKNANELQRAA
                     VEESRLKIPLLFGFDVIHGYRTVFPVPLGEAASFDPKTAERGA"
     gene            554..1849
                     /locus_tag="VD968_11775"
     CDS             554..1849
                     /locus_tag="VD968_11775"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15113.1"
                     /translation="MKTNTYFKSFLFILSVTVNFTFASTLRPQADAAALLREAAELLQ
                     AGRLDDAEGVLRRALAAVPASADAHNLLGVLNDRRGRFREAEAAYREAIRLLPRAVGA
                     RANLGVLLARSGRAAEAVPVFEEVLRLAPGHPPATFNLGLALFQLNRHDEAAALLASE
                     PALAQNAPEAFYHLGLIASARGRAEEAADLWQRALELRERYPEVNFALAEELRRQRRY
                     EGAAEFYERALAQDPSKLVYHVRLGGALMLLSRYDRALEVFRRAAERFPDSAEAHYFA
                     GIAARGAARYDAAEASLRRSLALKSGSVDATAQLGFVVGELGRGEEAEKILRRAVALD
                     ARHFYAHYDLGRLLVRARRFEEAVPVLRAAARLREQDPGVHYQLFIALTRLKRMEEAE
                     RELAAFKELDAARKARRASGEEEQVEDALPRPEAAEPER"
     gene            complement(1929..5435)
                     /locus_tag="VD968_11780"
     CDS             complement(1929..5435)
                     /locus_tag="VD968_11780"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE15114.1"
                     /translation="MAHTLESLRRALLCALFVLILSPAALAQFRAGIQGTVTDATGAV
                     VPEAAVTLRNNETGATQQTTSGGEGFYRISQLPPGTYTLTVEKAGFKKTTFESVVVNA
                     EQVQGVDVVLTAGEVAETVTVTGSASPALETENADINKAITNQEVKALPQFGRDPYEL
                     LRLTPGVFGQGARSGTGGSVSLPNQTGPGGSSERGIFQTENQVQISANGQRVSANNYQ
                     IDGTSVNSLTHGGAAVVTPNQESVKEVRVIANAYSAEYGRNSGAQVLTVSQNGTNQFH
                     GSLFLKNNSPGLNAFNKYGGPNGAPPVRVNQRLNQYGGSFGGPLPLPRFGFDPPTAFK
                     LGRDKAFFFFSYEGLRSSNTDTVNAFVETPQFRQLVQQVRPGSVAAAILGDPGAAPRV
                     ISVIPVTCAFAGFPSGSFNQCQQVAGGIDIGRPAGATGQYLSFGALNGGGLDGVPDLQ
                     FAQLSVPTLSRGNQFNLRLDFNLTSRDTLAFSSYLSRFRGTGSDAAGRSRPQGDVSTA
                     PKNAFGTITWTRVLSDSAVNEARFNATRFAFNEIESSSGTNFGIPRIEIESMPGDRLR
                     FGPPWSETTPGIFAENTFELRDTLRKVMGNMAWSFGGEARWEQDNNDLSGGSRPLFTF
                     GGLFNFVNDAPLFYQINADPRTGGPAESQRYFRSTTYAAFAQNDWKVRPNFTLNLGLR
                     WEYFSPLSETQGRISNLVLGSGAAALSGARLQVVDEMYPRDWNNFAPRVGFAYSPDWG
                     DALGGLFRQDRMVLRGGFGIAYNRVPIVLFANSRGNPPFFARYRICCGTSAADFSTPF
                     NGGQILYALGANNSPFSYPVNPALALGINPATGFPNLRPGVEQVEVYGAPADVPTPYV
                     YTYSLEGQYNLPGNLVGELGYQGSAGRKLVRLVNQIFFYPPTGTLSGVFFPTPDTTSS
                     YNAMIARLTRRFSQGLQFDANYRWAKSIDIISNEGPGAPTNPTFPLDVRQERGPSDYD
                     VRHYFVGSGIWELPIFRGRRGAVGKALGGWQVSSIVTAHTGFPWTPVIGDCPSLNRPV
                     ICPARPTAYLGGAGNDTSDEAFITGSNFAGGGTRYFSTTGATGEGATPRLPGVGRNSF
                     RGPNYFNVDMSVAKKFGVPEFLGEGTFLEVKANFFNVFNLLNLQSFGFNSPSTNITNA
                     LFGRAERGLAGRVIELQGRFQF"
     gene            5771..6958
                     /locus_tag="VD968_11785"
     CDS             5771..6958
                     /locus_tag="VD968_11785"
                     /inference="COORDINATES: protein motif:HMM:NF024799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HYE15115.1"
                     /translation="MRRMSEILPAAAGAVLLLAASACVSQPAGQSNSPGQSASGGDAG
                     YQRKVKKAGEPVRIGFSMDTLKEERWQRDKQLVEERARAVGAELLVDVANGDDAKQVS
                     QAENMLTRGVDVLIVAPHNGDVAASIVESAHRQGVPVISYDRLIKNSDVDLYVSHQVE
                     KMGEMQARYALERRPKGNYVLIGGAQTDNNALLLRKGQMTVLKPAVDRGDVKIIADPY
                     AKEWKAEEALRLTADAITRTNGDIQAVVASNDGTAGGVISALQQAGLEGKVLVTGQDA
                     QLDAVQRIAKGTQTMTIYKPIKPLADSAVDSAVKLARGEQLDAKDKVNNGKIDVPSIL
                     HEPQAVDKDNLAATVIKDGYHKLEDVYRDVPRDQWPKVETSSLGLRVVSLIMALGLAA
                     LRF"
     gene            6974..8497
                     /locus_tag="VD968_11790"
     CDS             6974..8497
                     /locus_tag="VD968_11790"
                     /inference="COORDINATES: protein motif:HMM:NF010069.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xylose ABC transporter ATP-binding protein"
                     /protein_id="HYE15116.1"
                     /translation="MPLLEMRDITKSFPGVRALDGVSFDLRAGELHALVGENGAGKST
                     LMKVLGGVYPHGTYGGEILIDGEARRFAGVREAEGAGIAVIYQELSLIKDLSVGENIF
                     LGREPRRFGVIRWEELYSRAQKLLNEVHLPVDPWAPVGQLGIGQQQLVEIAKALSQEA
                     RILVLDEPTAALTDAEVETLFRIIEKLKKRGVGMIYISHKLDEVFRVSERITVLRDGR
                     TVGTDRTSALDEPRVIARMVGREVGDIFPEAAHERGDVVFEVRNMTIEDPNVRGKLLV
                     NDVSFRVRRGEVLGVAGLMGAGRSDLLMGVFGAHAGRTTGEVFVEGRRVHIKRPSDAI
                     RQGVGFVTEDRKRFGLVLDQTILNNMTLAGLERLSGRFVTDVGAEAAAGERAMKDLKV
                     KANSVFTVAGTLSGGNQQKVVLAKWLLTKPRVLFLDEPTRGIDVGAKQEIYGHINRLA
                     GEGLAIVLVSSELPEVLGLSDRVLVLHEGRVTGEFRREEATPESVMACATGHARAAA"
     gene            8522..9109
                     /locus_tag="VD968_11795"
     CDS             8522..9109
                     /locus_tag="VD968_11795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15117.1"
                     /translation="MKRLGTTRLVILLAVAVNVVWAADKLATGGRDLRDRRALSLIRE
                     HGCSVGGCYPDFDGDYETDLLTIRAGDPDGVRMVAYVRGEESLDLPYSDGRTRVAVNR
                     AFVRERLLVYDGVNNSPPLRAAFAWDGQRLSPVQPSALDEEILDALDDRRGGPQWREL
                     AVAFRRVRGALYFFTLLALGGVLFYAKRRQRLRLP"
     gene            9131..10384
                     /locus_tag="VD968_11800"
     CDS             9131..10384
                     /locus_tag="VD968_11800"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15118.1"
                     /translation="MTTGTGNEPAVDRPPATADVAPPGAAAGEAPDGRARVAGFRIPT
                     DSLRAYTMVFALIAIWLFFQWKTVSPLYPYGTLLHPTNFSNLLQQMAVTGVLAVGMLM
                     VIVAGQIDLSVGSILGLAGGVAAMVQEPLGLLGALGAAVIVGIAIGAFQGSLVAYANI
                     PAFIVTLGGLLAWRGVILRLSEGATIPVRLPFLRELGVGKVPQGVGVALAALGIAAVV
                     LLTLRGLRARKRHGLSVPGMGATAVRVVVPSLLIALFIYWMNWGGGVPVPVLVLLAVA
                     AAGAFLTQNTTFGRYLYAIGGNPDAARLSGINIRRYILLAYCVLGLLVGVAAILHTGR
                     VGSATPDAGEYIELDAIAACVIGGTSLMGGRGTVSGAVVGALIMASLDNGMSLLGVRN
                     ETQFIVKGAVLVAAVGFDMLGRRKG"
     gene            10406..>10769
                     /locus_tag="VD968_11805"
     CDS             10406..>10769
                     /locus_tag="VD968_11805"
                     /inference="COORDINATES: protein motif:HMM:NF020701.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15119.1"
                     /translation="MMKAKPSTRPLLLSLILLLSFAAPTRTQTQGQGNNLAPGAPGRD
                     AQWPSAGKEAVGTSNTLESKVWFTLRGGVMDEVYYPTVDIANTQALQFVVVSQDGRRV
                     EIEEQDAEHRVEVANAQAL"
BASE COUNT         1683 a         3516 c         3850 g         1720 t
ORIGIN      
        1 tgcgccccgc gctcggccgt ctttgggtcg aagctcgccg cctcgccgag cgggacgggg
       61 aagacggtgc ggtagccgtg tatgacgtcg aagccgaaca ggagcggaat cttcaggcgc
      121 gactcctcga ccgccgcgcg ctgcaactcg ttcgcgttct tcacgccgcg cacgttcagg
      181 gtcgagccga gcagcccctt gcgcgccagc tccaagtgct cctcgcggta gcggccgtcg
      241 gcgtggccgt cgagctgctg tagctgtccg agcttctctt cgagtgtcat gcgcgcgaga
      301 agcgcgtcaa tcctgcgctc gatgggggat tcggcgcgac gcggggcggg cgcgtggcgg
      361 cgctgcggct gtgccggcgc ggccgcggcg acgagcgcga gcggcagcag cagccgcgta
      421 agcttccgtg ggctcatcgg cagtctcctc cgtcaggcgt ggccgggtga ttttattgct
      481 gagcttcgac gcgacgaata tactacagtt ccggcgcctt aaagaattaa ccgtggtggg
      541 caggatgaac aggatgaaga caaacacgta tttcaaatcc ttcctcttca ttctgtcagt
      601 cacggttaat tttactttcg catcaacact ccgcccacag gccgacgcag cggcgctgct
      661 gcgcgaggcc gcggagctgc ttcaggccgg gaggctcgac gacgccgagg gcgtgctcag
      721 gcgcgcgctc gcggccgtcc cggcgagcgc cgacgcgcac aacctcctcg gcgtgctcaa
      781 cgacaggcgc ggccggttcc gcgaggctga ggccgcctac cgcgaggcaa tccgcctgct
      841 gcctcgggcc gtcggggcgc gcgccaacct cggcgtgctg ctcgcgcgct cggggcgcgc
      901 ggccgaggcc gtccccgtct tcgaagaggt cttgcgactc gcgccgggcc acccgccggc
      961 gaccttcaac ctcgggctcg ccctcttcca gctaaatcgc cacgatgagg ccgcggccct
     1021 gctcgcgtcc gagcccgcgc tcgctcagaa cgcccccgag gctttctacc acctggggct
     1081 catcgcctcc gcgcgcggcc gcgccgaaga ggccgccgat ctctggcagc gagcccttga
     1141 gcttcgcgag cgatacccgg aggtaaactt cgcgctcgcc gaggagctgc ggcggcagcg
     1201 ccgctacgag ggcgcggccg agttctacga gcgcgcgctc gcgcaagacc cctcgaagct
     1261 cgtctatcac gtaaggctcg gcggcgcgct gatgctcctc tcgcgctacg accgcgcgct
     1321 cgaagtcttc cggcgcgctg ccgagcgctt ccccgactcg gcggaggcgc actacttcgc
     1381 cgggatagcc gcgcgcggcg ctgcccgcta cgacgcggcc gaggcgtctc tgcgccgctc
     1441 gctcgcgctc aagagcggga gcgtggacgc gacggcgcag ctcggcttcg tcgtgggcga
     1501 gctgggtcgc ggcgaggagg ccgagaaaat cttgcggcgc gccgtcgcgc tcgacgcgcg
     1561 ccacttctac gcgcactacg acctgggccg tctgctcgtc agggctcgcc gcttcgagga
     1621 ggccgtccct gtgctgcgcg ccgcggcgcg tctccgggag caagaccccg gcgtccacta
     1681 ccagctcttc atcgccctca cgcggctcaa gcgcatggag gaggccgagc gcgagcttgc
     1741 agccttcaaa gagctcgacg cggcgcgaaa ggcccggcgc gcctcgggcg aagaggaaca
     1801 ggtcgaggac gccctgccgc gcccggaggc cgcggagccg gagaggtagg cgcgaagatg
     1861 aaggggccgc gcccgtcgct tcagagaagt ctctgaagcg acgggcgcgg ccccgctctt
     1921 ttgtcgccct agaactggaa gcggccctgt agctcgatga cgcgaccggc caagccgcgc
     1981 tcggcgcgac cgaacagcgc gttcgttatg ttcgtgctcg ggctgttgaa gccgaacgac
     2041 tggaggttga ggaggttgaa gacgttgaag aagttggcct tgacttcgag gaacgtcccc
     2101 tcgccgagga actccggcac gccgaacttc ttcgccacgc tcatgtcaac gttgaagtag
     2161 ttcgggccgc ggaaggagtt gcgccccacg cccgggaggc gcggcgtcgc gccctcgccc
     2221 gtcgcgcccg tcgtggagaa gtagcgcgtt ccgccgccgg cgaagttgct gcccgtgatg
     2281 aatgcttcgt ccgatgtgtc gttgccggcg ccgcccagat aggcggtcgg gcgcgcgggg
     2341 cagatgacgg ggcggttcag gctcgggcag tcgcctatga cgggcgtcca cgggaagccc
     2401 gtgtgcgccg tgacgatgct gctcacctgc cagccgccga gcgccttgcc gacggcgccc
     2461 ctgcggccgc ggaaaatggg cagctcccat atgccggagc cgacgaagta gtggcgcacg
     2521 tcgtagtcgg aaggccctcg ctcctgcctc acgtcgagcg ggaaggtcgg gttcgtgggc
     2581 gcgcccggcc cctcgttcga gatgatgtca atgctcttgg cccagcggta gtttgcgtcg
     2641 aactgtaacc cttgagagaa gcggcgcgtc aggcgcgcga tcatcgcgtt gtagctcgag
     2701 gtggtgtcgg gcgtcgggaa gaagacgccc gagagcgtcc ccgtcggcgg gtagaagaat
     2761 atctggttga cgaggcggac gagcttgcgg ccggcgctgc cctggtagcc cagctccccc
     2821 accaagttac ccggcaggtt gtactggcct tcgagcgaat aggtatagac gtagggcgtc
     2881 ggcacgtcgg ccggcgcacc gtaaacctcg acctgctcga cgccgggccg caggttcggg
     2941 aagcccgtgg ccgggttgat gccgagcgcg agcgcagggt tgacggggta gctgaagggc
     3001 gagttgttcg cgcccagcgc gtagagaatc tgcccgccgt tgaagggcgt gctgaagtcg
     3061 gcggccgagg tgccgcagca gattcggtag cgcgcgaaga agggcgggtt gccgcgcgag
     3121 ttggcgaaga gcacgatggg gacgcggttg taggctatgc cgaagccgcc gcgcaggacc
     3181 atcctgtcct gccggaagag gccgccgagc gcgtcgcccc agtcggggct gtaggcgaag
     3241 ccgacgcgcg gggcgaagtt gttccagtcg cgcgggtaca tctcgtcaac gacctgaagg
     3301 cgcgcgcctg agagagccgc agcgccgctc ccgagcacga ggttgctgat gcgcccctgc
     3361 gtctccgaga gcggcgagaa gtactcccac cgcaggccga ggttcagggt gaagttgggc
     3421 cgcaccttcc agtcgttctg cgcgaaggcg gcgtaggtcg tgctgcggaa gtagcgctgc
     3481 gactcggccg ggccgcccgt gcgcgggtcg gcgtttatct ggtagaagag cggcgcgtcg
     3541 ttgacgaagt tgaagaggcc gccgaaggtg aagagcgggc gcgacccgcc cgagaggtcg
     3601 ttgttgtcct gctcccagcg cgcctcgccg ccgaagctcc acgccatgtt gcccatcacc
     3661 ttccggagcg tgtcgcgtaa ctcgaaggtg ttttcggcga agatgccggg cgtcgtctcg
     3721 gaccacggcg ggccgaagcg caggcggtcg cccggcatgg actctatctc gatgcgcggt
     3781 atgccgaagt tcgtccccga ggaggactcg atctcgttga aggcgaagcg cgtggcgttg
     3841 aagcgagcct cgttgacggc cgagtcggag agcacgcgcg tccacgttat ggtgccgaag
     3901 gcgttcttgg gggccgtgct cacgtcgccc tgcgggcggc tgcggcccgc cgcgtcgctg
     3961 cccgtgccgc ggaagcgcga caggtacgag ctgaacgcca gcgtgtcgcg cgaagtcagg
     4021 ttgaagtcaa ggcgcaggtt gaactggttg ccgcggctca aggtcgggac ggatagctgc
     4081 gcgaactgta ggtctggtac gccgtcgagg ccgccgccgt tcaaggcgcc gaaggagagg
     4141 tactgccccg tcgcgcccgc gggccgccct atgtctatgc cgcccgcgac ctgctggcac
     4201 tggttgaagg agccggacgg gaagccggcg aaggcgcacg tgacgggtat gaccgagatg
     4261 acgcgcggcg ccgctccggg gtcgcccagt atcgcggcgg cgacgctgcc gggccgcacc
     4321 tgctgcacga gctgccggaa ctgcggcgtc tcgacgaagg cgttgacggt gtccgtgttg
     4381 ctgcttctga ggccctcgta ggagaagaag aaaaacgcct tgtcgcggcc gagcttgaag
     4441 gccgtgggcg ggtcgaagcc gaagcgcggg agcggcagcg gcccgccgaa ggagccgccg
     4501 tactggttca ggcgctggtt gacgcggacg ggcggcgcgc cgttcgggcc gccgtacttg
     4561 ttgaaggcgt taaggccggg gctgttgttc ttcaggaaga ggctcccgtg gaactggttc
     4621 gtgccgttct gcgagacggt gagcacctgc gcgccggagt ttcggccgta ctcggcagag
     4681 taggcgttgg caatgaccct gacctccttg acagactcct ggttcggcgt gacgacggcc
     4741 gcgccgccgt gcgtcaggct gttcacgctc gtgccgtcaa tctggtagtt gttggccgag
     4801 accctctgtc cgttggcgga gatttggact tggttctcgg tctggaagat gccgcgctcc
     4861 gaggagccgc ccggccccgt ctggttcggg aggctgacgg agccgcccgt cccggagcgc
     4921 gcgccctggc cgaagacgcc gggcgtcaag cgcagaagct cgtaggggtc gcgcccgaac
     4981 tgcgggaggg ctttcacctc ctggttggtt atggccttgt tgatgtctgc gttctcggtc
     5041 tcgagcgcgg gcgaggcact gcccgtcacc gtgacggtct cggccacctc gccggccgtg
     5101 agcacgacgt caacgccctg cacctgctcg gcgttgacga cgacgctctc gaaggtcgtc
     5161 ttcttaaagc ccgccttctc gaccgtcaag gtgtacgtgc cgggcgggag ctggcttatg
     5221 cggtagaagc cctccccgcc cgaagtcgtc tgctgagtgg cgccggtctc gttgttgcgg
     5281 agcgtgacgg ccgcctcggg cacgactgcg cccgtcgcgt ccgtcacggt accctgtatg
     5341 ccggcccgga actgcgccag cgcggccgga gagagaatga gcacgaagag cgcgcagagg
     5401 agtgcgcgcc tgagagactc aagggtgtgg gccatttttt tgaacacctc cgttggcggg
     5461 gttgctagcc gcgcgcgcgg cggggcgggc ccgcttcgcg tgcggtggcg cgagggccgc
     5521 ccgtttcaaa acgtcggggg tagagaactg ccggcgccag actgccgtga cttgcctgtt
     5581 cggttgtgct gattgactgg ggaagaaata gcacttgggc gggttttttt caaatgaaat
     5641 ttttcgacgc ctctggtaat cttggtcgcg cccaagcaga ctttccgacg agccaaaccc
     5701 gaactcgggc cagccgggcg tgcgccgcgc gccgccccgg cggcaccggc gcgcgaagga
     5761 gcgaaaacgg atgcgaagaa tgagtgagat tttgccggcc gcggccggcg ctgttctgct
     5821 gctcgccgcg tcggcgtgcg tgagccagcc ggccgggcag tcgaactcgc cggggcagtc
     5881 cgcgtcgggc ggcgacgccg gctaccagcg gaaggtgaag aaggcgggcg agcccgtccg
     5941 cataggcttc tcgatggaca cgctcaagga ggagcgctgg cagcgagaca aacagttggt
     6001 cgaggagcgc gcgcgcgccg tgggcgcaga gcttctggtt gacgtggcta acggcgacga
     6061 cgccaagcag gtcagccagg ccgagaacat gctgacgcgc ggcgttgacg tgctcatcgt
     6121 cgccccgcac aacggcgacg tggccgcctc catcgtcgag tcggcgcacc gccagggcgt
     6181 ccccgtcatc agctacgacc ggctgattaa gaactccgac gttgacttat acgtctcgca
     6241 ccaggtcgag aagatgggcg agatgcaggc gcgctacgcc ctcgagcgca ggcccaaagg
     6301 caactacgtc ctcatcggcg gcgcgcagac cgacaacaac gcgctgctgc tgcgcaaggg
     6361 gcagatgacg gtcttgaagc ccgcggttga ccgcggcgac gtgaagataa tcgcagaccc
     6421 ttacgcgaag gagtggaagg ccgaggaggc cctgcggctg acggccgacg ccatcacgcg
     6481 cacgaacggc gacatacagg ccgtcgtggc ctcgaacgac ggcaccgccg gcggcgtcat
     6541 ctcggccctg caacaggcgg ggctggaggg caaggtattg gttacgggcc aggacgcgca
     6601 gctcgacgcc gtgcagcgca tcgcgaaggg cacgcagacg atgaccatct acaagcccat
     6661 caagccgctc gccgacagcg ccgttgactc ggccgtcaag ctcgcgcgcg gcgagcagct
     6721 ggacgcgaag gacaaggtca acaacggcaa gatagacgtg ccttccatcc tccacgagcc
     6781 gcaggccgtg gacaaggaca acctcgccgc gaccgtcata aaggacggct accacaagct
     6841 cgaagacgtt taccgcgacg tgccgcgcga ccagtggccg aaggttgaga cctcaagcct
     6901 cgggctccgg gtcgtgagct tgatcatggc gctggggctc gcggcgctgc gcttttaggc
     6961 ggggctctca agtatgccgc tcctcgagat gcgggacatc acgaagtctt tccccggcgt
     7021 gcgtgcgctc gacggggtga gcttcgacct gcgcgcgggc gagttgcacg cgctcgtggg
     7081 cgagaacggg gcggggaagt caaccctgat gaaggtgctg ggcggcgtct atccgcacgg
     7141 cacgtacggc ggggagattc tgattgacgg cgaggcgcgg cgcttcgccg gggtgcgcga
     7201 ggccgagggc gcaggcatcg ccgtcatata ccaggagctt tcgctcataa aggatctttc
     7261 ggtcggcgag aacatcttcc tcgggcgcga gccgcgtcgc ttcggcgtca tacgctggga
     7321 ggagctttac agccgcgcgc agaagctcct gaacgaagtc cacctgccgg ttgacccgtg
     7381 ggcgcccgtg ggccagctcg gcatcgggca gcagcagttg gtcgagatag cgaaggcgct
     7441 ctcgcaggag gcgcgcatac tcgtcctcga cgagccgacg gccgcgctca ccgacgccga
     7501 ggtcgagacg ctcttccgca tcatcgagaa actgaagaag cgcggcgtcg gcatgatcta
     7561 catctcgcac aagctcgacg aggtgttccg cgtctccgag cgcatcaccg tcctccgcga
     7621 cggccgcacg gtcggcacgg accggacatc cgcgctcgac gagccgcgcg tcatcgcccg
     7681 catggtcggg cgcgaggtcg gcgacatctt ccccgaggcg gcgcacgagc gcggcgacgt
     7741 ggtcttcgaa gtccgcaaca tgacgatcga agacccgaac gtccgcggca agctcctcgt
     7801 caacgacgtc agcttccgcg tgcggcgcgg agaggttctc ggcgtcgccg gcctgatggg
     7861 ggcggggcgc agcgaccttc tgatgggcgt cttcggcgcg cacgccggga ggacgacggg
     7921 cgaggtcttc gtcgagggca ggcgcgtgca tatcaagcgg ccctcggacg cgattcgcca
     7981 aggcgtcggg ttcgtcaccg aagaccgaaa gcgcttcggg ctcgtgctcg accagacgat
     8041 tctcaacaac atgacgctcg cggggttgga gcgcctgtcg ggccgcttcg tcacggacgt
     8101 gggcgcagag gccgccgcgg gtgagcgcgc gatgaaggac ttgaaggtca aggccaactc
     8161 ggtcttcacc gtggccggca cgctcagcgg cggcaaccaa cagaaggtcg tgctggctaa
     8221 gtggctcttg acgaagccgc gcgtgctctt cctggacgag ccgacgcgcg ggatagacgt
     8281 gggcgcaaag caggagattt acggccacat caaccggctc gcgggcgagg ggctcgcaat
     8341 agtgctcgtc tcgtcggagc tgcccgaggt gctggggctc tcggaccgag tgctcgtgct
     8401 gcacgaaggg cgcgtcaccg gcgagttcag gcgcgaggag gcgacgcccg agtccgtcat
     8461 ggcctgcgcc acgggccacg cgagggcggc ggcctgagag tcgggccggg agttttttat
     8521 tatgaagcgc ctgggcacga cgcgactcgt catcctgctc gccgtggcgg tcaacgtcgt
     8581 gtgggcggcc gacaagctcg cgacgggcgg gcgcgacctc cgcgaccggc gcgcgctctc
     8641 cctcatacgc gagcacggct gctcggtcgg gggctgctac cccgacttcg acggcgacta
     8701 cgagaccgac ctgctgacaa tcagggccgg cgacccggac ggcgttcgca tggtcgccta
     8761 cgtgcgcggc gaggaatccc tcgacctgcc gtactccgac ggccgaacgc gcgtcgccgt
     8821 caaccgcgca ttcgtcaggg agcggctgct cgtctatgac ggcgtgaaca actcgccgcc
     8881 gcttcgcgcg gccttcgcgt gggacggcca gaggctctcg ccggttcagc cctcggcgct
     8941 cgacgaggag attctcgacg cgctcgacga taggcgcggc gggccgcagt ggcgcgagct
     9001 cgccgtagcc ttcaggcggg tgaggggcgc actctacttc ttcacgctgc tcgcgctcgg
     9061 cggcgtgctg ttctacgcga agcggcgtca gcgcctgcgc ctgccctgac gccggaacgg
     9121 agccagacac atgacgacgg gaacaggcaa tgagccggcg gttgacaggc cgccggccac
     9181 ggcggacgtt gcgccgcccg gcgcggccgc gggcgaggcg ccggacgggc gcgcgcgcgt
     9241 cgcgggcttc cgcatcccga ccgactcttt gcgcgcctac acgatggtct tcgcgctcat
     9301 agccatctgg ctcttcttcc agtggaagac cgttagcccc ctgtacccct acggcaccct
     9361 tctgcacccg acgaacttct cgaacctgct ccagcagatg gcggtgacgg gcgtgctggc
     9421 ggtcgggatg ctgatggtca tcgtggcggg gcagattgac ctctcggtgg gctcgatact
     9481 ggggctcgcc gggggagtcg cggcgatggt gcaggagccg ctggggctcc tgggcgcgct
     9541 cggcgcggcc gtaatcgtcg gcatcgcgat aggcgctttc cagggctcgc tcgtcgcata
     9601 cgcgaacata ccggccttca tcgtcacgtt gggggggctg ctcgcctggc gcggggtgat
     9661 actacggctc agcgagggcg cgacgatacc cgtgcgcctg cctttcctcc gggagctggg
     9721 cgtcggcaaa gtcccgcagg gcgtcggcgt agcgctcgcg gccctgggga ttgcggcggt
     9781 cgtgctgctc accctccgcg ggctgcgggc gcgaaagcgc cacggcctaa gcgtgccggg
     9841 gatgggcgcg acggccgtgc gcgtcgtcgt cccgtcgctc ctgatcgccc tcttcatcta
     9901 ctggatgaac tggggcggcg gagtgcccgt cccagtgctc gtgctcctgg cggtcgcggc
     9961 ggccggcgcg ttcctgacgc agaacacgac gttcggccga tacctctacg ccatcggcgg
    10021 caacccggac gccgcgcggc tctcgggcat caacatacgc cgctacatac tgctcgccta
    10081 ctgcgtgctc ggcctgctcg tgggcgtcgc cgccatactg cacacagggc gcgtcggcag
    10141 cgccacgccg gacgcgggcg agtacatcga gctcgacgcc atcgcggcct gcgtcatcgg
    10201 cgggacttcg ttgatgggcg ggcgcggcac cgtgtcgggc gcggtcgtcg gcgcgctcat
    10261 catggcgagc ctcgacaacg gcatgtcgct gctcggggtc aggaacgaga cgcagttcat
    10321 cgtcaagggc gccgtgctcg tcgccgccgt cggcttcgac atgctcggcc gccgcaaggg
    10381 ctgacgctgc gcggccgcgc actctatgat gaaagcaaag ccgtcaacga ggccgctact
    10441 cctctctctt attctcctgc tatcgttcgc cgccccgacg cgcactcaga cgcaggggca
    10501 gggcaacaac ctcgcgcccg gagcgccggg ccgcgacgcc cagtggccga gcgccggcaa
    10561 ggaggccgtc ggcacctcga acacgcttga atcgaaggtc tggttcacgt tgcgcggcgg
    10621 cgtgatggac gaggtttatt accccacggt tgacattgcg aacacgcagg cgcttcagtt
    10681 cgtcgtcgtg agccaggacg gccgccgcgt cgagatcgaa gagcaagacg ccgagcaccg
    10741 cgtcgaagtc gcgaacgctc aggcgctaa
//
LOCUS       DASPKR010000439         5984 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1357002, whole genome shotgun sequence.
ACCESSION   DASPKR010000439 DASPKR010000000
VERSION     DASPKR010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5984)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5984
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1357002"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(167..1216)
                     /locus_tag="VD968_11810"
     CDS             complement(167..1216)
                     /locus_tag="VD968_11810"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYE15120.1"
                     /translation="MNVLQIGPYPPPHGGVQTNLVAIRRYVRERGGRCAVINLTRHRR
                     AEADDVYYPKSGAGVLKLFAELRADIIHFHLGGDVKPRLLALSLACCAWPGSKAVLTF
                     HSGGYPSSEAGRRARAASVGGFVFRRFDSIIAVNEEIVSMFRRMGVAPERLRLIRPHS
                     PSAPPEGAQLSPRLRAFFDAHRPVLTTVGLLETEYDLPLQVEALGRVRERFPRAGLVI
                     VGSGSIEGELRRLVASRPYAEHVMLCGDVPHEETLRAVAESDVFLRTTLYDGDSISVR
                     EALHLGVPVVATDNGMRPEGVRLIPVSDGHALVEAVREQLSLGRRERPANGAAADENV
                     AAVFELYRELLGEGG"
     gene            complement(1216..3387)
                     /locus_tag="VD968_11815"
     CDS             complement(1216..3387)
                     /locus_tag="VD968_11815"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bi-domain-containing oxidoreductase"
                     /protein_id="HYE15121.1"
                     /translation="MKQVIRRGLKEIIVDEVPDPSAAPHHVLVRPVYSLISSGTETAS
                     IHSEGVLKEVADNPSHLRKVWEVMKQAGPVRTLSEVRAKFSEYAVLGYSGAGVVVERH
                     PTVKDLEVGERVAYGGEGTGHGETVLVGRNLASRVPDAVPFEHACFATLGSIAMNAVR
                     IAGVSLGDTVAVIGLGLVGQLVAQLVRLQGGVVIATDLKAERVELAGRLGADHPIQPG
                     GAPAKESVAALTEGRGADCVIIAAAAKSSAPARLALELCRDRGRIVVVGAVEMSFPWQ
                     EMYMKEIQLFMSRAYGPGSYDPEYEKRGRDYPVTYVRWTENRNMGEFLRLVESGRLRL
                     EPLITHRFPLEEAAEAYATIMDAASNSLAVLLRYPAAEEERPELSFAPKRRVEAAASA
                     KAEGELSFALAGAGNIARWAHLPALKRLSGVRLGAVYSASGTRGKSYAQRFGALYCAS
                     DYEQVLRDDSIDAVLIATRNQEHAAQALAALEAGKHVFVEKPMALTSEECSELVRAVG
                     RSGKQLTVGFNRRFAPFYRALRGQLARRTGPAVLNCRVNSPGISGSYWMADPSIGGAI
                     LGEAVHFIDLMYWLLGSEPVSVSAYRLPTGKQEPVGENNVAAAFKFADGSVASLTYCT
                     VGSKTSAGERVEAFAEGVGVVTEDFKSLSVRKGLARTRTRWWGEKGYAAQMESFVAAL
                     RAGREPEVTALDGARATLGCLALMGSARTGEPREIDLTAVI"
     gene            complement(3599..>5984)
                     /locus_tag="VD968_11820"
     CDS             complement(3599..>5984)
                     /locus_tag="VD968_11820"
                     /inference="COORDINATES: protein motif:HMM:TIGR03437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15122.1"
                     /translation="IGVEFGRVNSSAVVYDLVKLGDGSPAQDSPEEVPHHLTLDRCYI
                     HGDDGGELKRGVSLQSAHTEILNSHVSGFKVRGQDAQAVAGWNGPGPYRIVNNYLEGA
                     GENLIFGGARSSVPGQTPSDILISRNHISKPASWRGRWTVKNLLELKHARRVRIEGNL
                     LEHCWLDAQQGYAVLFTPRPSDSGDWAVVEDVEFVNNVVRRVAAGVHVSGQDDLFSPA
                     PKSRRLRRVRVANNLFEGIDHREWGGDGSFLKVVSGAEQLTVEHNTVLHTGWALVKAG
                     GEPTTGFVFRHNIARHNEYGVHGDSVGYGNPALAAFFPGGTFAGNVIAKEVGAPWNTD
                     IVYPQGNWYPDTLGDVRFENLQAGDYRLSSASPYKGAAADGGDIGCDLGAINAALSGG
                     SAPSATPTPTPTATPSPTPSATPTPTPAPSLTTTTLVGAAYALAFSLAAEADADPARI
                     ASLVTDVERAHAVFVSESGKIAAASQVDTSLRAALYFARAAAALATTETSSTGVQSRL
                     QITALHLSAARDLLPGGAGSALALPPPASSPVARAAVIGSASTLSAAGGVLAVAAGGA
                     GSITGDPAQSPLATVTRTASPDSAGRFPYELEGVSVTIAGTAAQLLSVSPSRVAFVAP
                     EGLAEGDAEVIVTLQEGYVSRGVATVSAVAPGLFTADGTPTGEALVMNAADYTRGIFK
                     VYTPANLSGTDRRTRLMIFATGLRGAANADAANDVRAPARANVAESVAVEARLQNGLV
                     YWLPVEYAGAAAARQSGVDQVNALLPNQLSESGVVELTIVVGGKRSNTARIVVN"
BASE COUNT          892 a         1997 c         2172 g          923 t
ORIGIN      
        1 tggtcaggtt ttgcatgggg gttcgttaac agtccgggcc tcaaggcgaa acgccccggc
       61 aggtttcgtg agcggagtgc gccctccggc gcggctccga gggaaaagct taacgcgaac
      121 tccgcgccgc gggcaacaaa aaagggcggc cggtacgctt tcgcgctcaa cccccctccc
      181 ccagaagctc gcggtagagc tcgaagactg ctgcgacgtt ctcgtcggcg gcggcgccgt
      241 tcgcggggcg ctcgcggcgg ccgagcgaga gctgctctcg gacggcctcg acgagcgcgt
      301 ggccgtccga gacggggatg aggcgcacgc cctcggggcg catgccgttg tcggttgcga
      361 cgacggggac gccgaggtgc agggcctccc ggacggagat ggagtcgccg tcgtagagcg
      421 tcgtgcgcag gaagacgtcg ctctccgcca cggcgcgaag ggtctcctcg tgcggcacgt
      481 cgccgcagag catgacgtgc tccgcgtagg gcctcgatgc gacgaggcgg cgcagttccc
      541 cctctatgct gcccgagccg actatgacga gcccggcgcg agggaagcgc tcgcgcacgc
      601 ggccgagcgc ctcgacctga agcggcaggt cgtactcggt ctccaacagc cccacggtcg
      661 tgagcaccgg acggtgcgcg tcgaagaagg cacgcagccg cggcgagagt tgcgctccct
      721 cgggcggcgc cgacggcgag tgcggccgta tgagccggag cctttcgggc gcgacgccca
      781 tgcggcggaa catcgagacg atctcttcgt tgacggcgat gatgctgtcg aagcgtcgga
      841 agacgaagcc gccgacggag gccgcgcgcg cgcgccgccc cgcttctgac gaagggtagc
      901 cgcccgaatg gaaggtcagc acggccttcg agcccggcca cgcgcagcac gcgaggctca
      961 gcgcgagcag ccgcggcttc acgtcgccgc cgaggtggaa gtggatgatg tcggcgcgca
     1021 gctcggcgaa gagcttgagg acgcccgcgc cgctcttcgg gtagtaaacg tcgtcggcct
     1081 cggcgcggcg gtggcgcgtg aggttgatga cggcgcagcg cccgccgcgc tcgcgcacgt
     1141 atcgcctgat ggcgacgagg ttcgtctgca ccccgccgtg cggcggcggg tacgggccga
     1201 tctggaggac gttcatcaaa taactgctgt taaatctatc tcgcgcggct cgcccgtgcg
     1261 ggcggagccc atgagggcga ggcagccgag cgtggcgcgc gcgccgtcga gcgccgtcac
     1321 ttcgggctcg cggcccgcgc gcagcgcggc gacgaaggac tccatctgcg ccgcgtagcc
     1381 cttctcgccc caccagcgcg tgcgcgtgcg cgcaagcccc ttcctcaccg agaggctctt
     1441 gaagtcttcg gtgacgacgc cgacgccctc ggcgaaagcc tcgacgcgct cgcccgcaga
     1501 ggtcttgctc ccgaccgtgc agtaagtcaa cgaagctacc gagccgtcgg cgaacttgaa
     1561 agcggcggcg acgttgttct cgccgacggg ctcttgcttg cccgtcggca gtctgtacgc
     1621 ggagacgctc acgggctcgg agccgagcag ccagtacatc aagtctatga agtggacggc
     1681 ttcgccgagt atcgcgccgc cgatgctggg gtctgccatc cagtaggagc cggagatgcc
     1741 gggcgagttg acgcggcagt tgaggacggc ggggcccgtg cgccgggcga gctggccgcg
     1801 caaggcgcgg tagaagggcg cgaagcggcg gttgaagccg acggtcagtt gtttgccgct
     1861 gcgcccgacg gcgcgcacga gttcgctaca ctcttccgac gtgagcgcca tcggcttctc
     1921 gacgaagacg tgcttgcccg cttcgagcgc ggcgagcgcc tgcgcggcgt gctcctgatt
     1981 gcgcgtcgcg attagcaccg cgtcaatgga atcgtccctc agaacctgct cgtagtcgga
     2041 ggcgcagtag agcgcgccga acctctgcgc gtaggacttc ccgcgcgtgc ccgacgccga
     2101 atagacggcc ccgagcctta cgcccgacag acgcttgagc gcgggcaggt gcgcccagcg
     2161 cgcgatgttg cccgcgcccg cgagcgcgaa gctaagctcg ccctcggcct tagccgacgc
     2221 ggcggcttcg accctccgct tgggcgcgaa ggaaagctcg ggccgctcct cttccgccgc
     2281 agggtagcgc agcaagacgg cgaggctgtt cgacgcggcg tccattatgg tcgcgtaggc
     2341 ttcggcggcc tcttcgagcg ggaagcggtg cgtgatgagg ggctcaagcc tgagccggcc
     2401 cgactcgacg aggcgcagga actcgcccat gttcctgttc tcagtccagc ggacgtaagt
     2461 gacggggtag tcgcgcccgc gcttctcgta ctcggggtcg tagcttccgg ggccgtaggc
     2521 gcgcgacatg aagagttgaa tctccttcat gtacatctcc tgccagggga agctcatctc
     2581 gacggcgccg acaacgacta tgcgcccgcg gtcgcggcag agttcgagcg cgaggcgcgc
     2641 gggggccgac gacttggcgg ctgccgcgat gatgacgcag tctgccccgc gcccttcggt
     2701 gagcgcggcg accgattcct tcgccggggc gccgcccggc tgtatgggat ggtcggcgcc
     2761 gagccgtccg gcaagctcga cgcgctcggc cttcaggtcg gtcgcgatga cgacgccgcc
     2821 ctgcaggcgg acgagttgcg cgacgagctg gccgacgagc ccgaggccga tgacggcgac
     2881 cgtgtcgccc aaagagacgc ccgcgatccg gacggcgttc atcgcgatgc tgccgagcgt
     2941 ggcgaagcat gcgtgctcga acggcactgc gtcggggacg cgcgaggcga ggttgcgccc
     3001 gacgaggacg gtctcgccgt ggcccgtccc ctcgccgccg taggctacgc gctcgccgac
     3061 ttccagatct ttgacggtcg ggtgtcgctc gacaacgacg ccggcgcccg agtagccgag
     3121 cacggcgtac tcgctgaact tcgcgcgcac ctcggagagc gtgcgcaccg gcccggcctg
     3181 cttcatcacc tcccagacct tgcgcaggtg cgaggggttg tcggcgacct ctttgagcac
     3241 gccctcactg tggatactgg ccgtctcggt gccgctgctg atgagcgagt aaacggggcg
     3301 gacgaggacg tggtgcgggg cggccgaggg gtctggcacc tcgtccacga ttatctcttt
     3361 gaggcccctg cggatgacct gtttcatttt cgggtaagcg cgtcggccgg cctgggaaaa
     3421 ctcttgcggc gtgtgcggcc tgctggcgga tttaagatgg cacgcgggcg gagggcttgt
     3481 caaaaggatt gcggatttcg gatcgcggat tgaaaagtag ggagattgac gacagcactg
     3541 ccgtcatcaa tcctcttctt ccaatccgcg atccgaaatc cgccgctccg caatcggttc
     3601 agttgacgac gattctggcg gtgttgctgc gcttgccgcc gacgactatg gttagctcga
     3661 ccacgccgga ctccgacagt tggttcggga gtaaggcgtt gacctggtca acccccgact
     3721 gccgcgccgc ggccgcccct gcgtactcga ccggcagcca atagacgagg ccgttctgca
     3781 agcgcgcctc gacggcgacg gactccgcga cgttcgcgcg cgcgggcgcg cgaacgtcgt
     3841 tggcggcgtc ggcgttggcc gcgccgcgca ggcccgtggc gaagatcatc aggcgcgtgc
     3901 ggcggtctgt gccggagagg ttcgcgggcg tgtacacctt gaagatgccg cgcgtgtagt
     3961 cggccgcgtt catgacgagc gcctcgcccg tgggagtgcc gtcggcggtg aagaggccgg
     4021 gcgcgacggc cgagaccgtc gcgacgcccc gcgagacgta gccctcctga agcgtgacga
     4081 tcacctcggc gtcgccctcg gccagcccct cgggcgcgac gaacgctacg cgcgagggcg
     4141 agacggagag tagctgagcg gccgtgcccg cgatggtcac gctcacgcct tccagctcgt
     4201 aggggaagcg cccggcggag tcgggcgagg ccgtgcgcgt gacggtggcg agcgggctct
     4261 gcgcgggatc gccggttatc gagccggcgc cgccggctgc tacggccagc acgccgcccg
     4321 cggccgagag cgtcgaggcc gagcctatga cggcggcgcg cgcgacgggc gaagaggcgg
     4381 gcggtggcag cgccaaggcg gagcccgccc cccccggcag gaggtcccta gcagccgaca
     4441 ggtggagcgc cgtgatttgc aggcggctct gcacgcccgt cgaggaagtt tccgtcgtcg
     4501 cgagcgccgc ggcggcgcgc gcgaagtaga gggcggcgcg caggctcgtg tcaacctgag
     4561 aggccgctgc tatcttcccc gactccgaga cgaagacggc gtgcgcgcgc tcaacgtccg
     4621 tgacgagaga ggcgatgcgg gcggggtctg cgtccgcttc ggccgcgagc gagaaggcga
     4681 gcgcgtaggc cgcgccaacg agcgtcgtgg tggtgagcga aggcgcgggc gtcggcgtag
     4741 gggtggccga aggcgtcggc gacggcgtgg cagtgggcgt aggcgtcggg gtcgccgacg
     4801 gcgcggagcc gcccgagagc gcggcattga tggcgccgag gtcgcagcca atgtcgccgc
     4861 cgtcggccgc cgcgcccttg tagggcgagg cagaggagag gcggtagtcg cccgcctgta
     4921 agttctcgaa cctcacgtcg ccgagcgtgt cgggatacca gttgccctgt ggatagacta
     4981 tgtcggtgtt ccagggcgcg ccgacctcct tggcgatgac gttgccggcg aacgtgccgc
     5041 ccgggaagaa ggccgccagc gccgggttgc cgtagccgac gctgtcgccg tgcaccccgt
     5101 actcgttgtg gcgcgcgatg ttgtggcgga agacgaaccc cgtcgtcggc tccccgccgg
     5161 ccttcaccag cgcccagccc gtgtgcagca ccgtgttgtg ctccaccgtc agctgctccg
     5221 cccccgagac gaccttcagg aagctcccgt ccccgcccca ctccctgtgg tctatgccct
     5281 cgaacaggtt gttcgccacc ctgaccctgc gcagcctcct cgacttcggc gccggcgaga
     5341 acaggtcgtc ctggcccgag acgtggacgc cggcggccac tctgcgcacg acgttgttga
     5401 cgaactcgac gtcctcgacc accgcccagt cgccgctgtc ggacggccgc ggcgtgaaga
     5461 gcacggcgta gccctgctgg gcgtcgagcc agcagtgctc gaggaggttc ccctctatcc
     5521 tcaccctccg ggcgtgcttg agctcgagca ggttcttgac ggtccaccgg ccgcgccacg
     5581 aggccggctt cgagatgtgg ttgcgcgaga tgagtatgtc ggagggcgtc tgcccaggca
     5641 cggaggagcg ggcgccgccg aatatgaggt tctcgccggc gccctccagg tagttgttca
     5701 cgatgcggta ggggccgggg ccgttccagc ccgcgaccgc ctgggcgtcc tgccccctca
     5761 ccttgaagcc tgagacgtgg ctgttgagaa tctcggtgtg ggcgctctgg agagagacgc
     5821 cgcgcttgag ctcgccgccg tcgtcgccgt ggatgtagca gcggtcgagg gtgaggtggt
     5881 gcggcacctc ctcgggcgag tcctgcgcag ggctaccgtc gcccagcttc acaaggtcat
     5941 acacgaccgc cgacgaattg acccggccga actccacgcc tatg
//
LOCUS       DASPKR010000440         2033 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1875098, whole genome shotgun sequence.
ACCESSION   DASPKR010000440 DASPKR010000000
VERSION     DASPKR010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2033)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1875098"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1138
                     /locus_tag="VD968_11825"
     CDS             <1..1138
                     /locus_tag="VD968_11825"
                     /inference="COORDINATES: protein motif:HMM:NF036809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 2 protein"
                     /protein_id="HYE15123.1"
                     /translation="VLPEAVAEHDPSRPYWPSSPSSNLEDDPDSRRIGDVHYWEVWHA
                     AKPFSEYEKQFPRFMSEYGFQSFPLIETVNAYTVPADHDIQSPVMLAHQKHPRGNQLI
                     REYMLREYAEPKDFESFLYVSQVLQAEGIKRGTEHFRRIRPRNMGALYWQVNDCWPVA
                     SWSGMDYFGRWKAMHFYARRFFRDVLVSPHEEGGRVNVYVVNDRALPAPARLDVKLLD
                     FGGRVLFERSLPVEVKPLSSAVYLSVPTKELLGGRDPRTVFLNCELSEKSAAATTSNR
                     LFFAPYKDLRLHATEIRVEVTESGKALRVRLRADALARGVHLSAAPHEGRFSDNFFDL
                     LPATEVTVEFRPRGRLDAAGLRRALKVRSLADAFARARAAAPRL"
     gene            1135..>2033
                     /locus_tag="VD968_11830"
     CDS             1135..>2033
                     /locus_tag="VD968_11830"
                     /inference="COORDINATES: protein motif:HMM:NF014877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15124.1"
                     /translation="MNSLKIGISGVRGVVGETFTPELAVGFAQAFGTYLDSGRILVCR
                     DARTSGPMVRAAVVAALLAAGCEVIDLGVCPTPSMQLAVPRLSADGGISITAGHNPEP
                     WNALKFVRGDGLYLNAAQADELLDIFHQGEFEKAGWDRIRARVERADAIENHLSALAA
                     AFDVEAVRSRRLRVAVDCCNSSCALLSPRWLAHLGCEVFAINDDTAAPFPHAPEPRPR
                     TMGQLRAVVRAGRADVGFAHDADGERLGVVTDGGEILPEEATLAAAAEIELARRGGRG
                     ATVVTNVSTSGAVDLIAARHGAAV"
BASE COUNT          318 a          731 c          674 g          310 t
ORIGIN      
        1 cgtgctgccc gaggcggtcg ccgagcacga cccttcgagg ccctactggc ccagctcgcc
       61 cagctcgaac ctcgaggacg accccgactc gcgccgcata ggcgacgttc actactggga
      121 ggtctggcac gccgcgaagc cattcagtga atacgagaag cagttcccgc gcttcatgag
      181 cgagtacggc ttccagtcct tcccgctcat cgagacggtc aacgcctaca ccgtacccgc
      241 cgaccacgac atacaatccc ccgtcatgct cgcgcaccag aagcacccgc gcgggaacca
      301 gctcatacgc gagtacatgc tgcgcgagta cgccgagccg aaggacttcg agtcgttcct
      361 ctacgtcagc caagtccttc aggccgaggg catcaagcga ggcaccgagc acttccgccg
      421 catacggccc cgcaacatgg gcgcgctcta ctggcaggta aacgactgct ggcccgtcgc
      481 ctcctggtcg ggcatggact acttcgggcg ctggaaggcc atgcacttct acgcgcgccg
      541 cttcttccgc gacgtgctcg taagcccgca cgaggagggc gggcgcgtca acgtctatgt
      601 cgtcaacgac cgcgctctgc ccgcgcccgc gcggctcgac gtgaagctgc tcgacttcgg
      661 cgggcgcgtg ctcttcgagc ggagcctgcc cgtcgaagtc aaaccgcttt cgagcgccgt
      721 ctatctgagc gtcccgacga aagagctgct cggcgggcgc gacccgcgga cggtctttct
      781 caactgcgag ctttctgaga aaagcgcggc ggcgacgacg agcaaccgcc tcttcttcgc
      841 gccctacaaa gacctccggc tgcacgcgac ggaaattaga gtcgaagtca cagagagcgg
      901 caaagccctg cgcgtccgcc tgcgcgccga cgcgctggcg cgcggcgtgc acctctcggc
      961 cgcgccgcac gagggccgct tctcggacaa cttcttcgac ctcctgccgg ccacggaagt
     1021 cacagtcgag ttccgcccgc gcggccgact cgacgccgcc ggcctgcgcc gcgctcttaa
     1081 agtgcgctcg ctcgccgacg ccttcgcccg cgctcgggcc gccgccccgc gcttatgaac
     1141 tcgctcaaga taggcatcag cggcgtgcgc ggcgtggtgg gcgagacctt cacgccggag
     1201 ctggccgtcg ggttcgccca agccttcggc acctacctcg actcggggcg catactcgtc
     1261 tgccgcgacg cgcgcacgtc ggggccgatg gtgcgcgcgg cggtcgtggc ggcgctgctc
     1321 gccgccgggt gcgaggtgat tgacttgggg gtatgcccga cgccgagcat gcagctcgcc
     1381 gttccgcggc ttagtgccga cggcggcatc tcgatcacgg cgggccacaa cccggagccc
     1441 tggaacgcct tgaagttcgt gcgcggcgac ggcctctacc tgaacgccgc gcaggccgac
     1501 gagcttttag acatattcca ccagggcgag ttcgagaagg ccggctggga tcgcatacgc
     1561 gcccgcgtcg agcgcgccga cgcgattgag aatcatctct cggcgctcgc cgccgccttc
     1621 gacgttgagg ccgtgcggtc gcgccgcttg agggtggccg tggactgctg caacagctct
     1681 tgcgcgctgc tctcgccgcg ctggctcgca cacctcggct gcgaggtctt cgcaataaac
     1741 gacgacacgg ccgcgccatt cccgcacgcg cccgagccga ggccgcggac gatggggcaa
     1801 ctgcgcgcgg tcgtcagggc gggccgcgcg gacgtgggct tcgcgcacga cgccgacggc
     1861 gagcggctcg gggttgtcac agacgggggc gagattctgc ccgaagaggc gacgctcgcc
     1921 gccgcggccg agatagagct ggcgcggcgc ggcggccggg gcgctacggt cgtcacgaac
     1981 gtctcgacga gcggggccgt ggatttaatc gccgcgcgcc acggcgccgc ggt
//
LOCUS       DASPKR010000441        11021 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1743837, whole genome shotgun sequence.
ACCESSION   DASPKR010000441 DASPKR010000000
VERSION     DASPKR010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11021)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11021
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1743837"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            182..502
                     /locus_tag="VD968_11835"
     CDS             182..502
                     /locus_tag="VD968_11835"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15125.1"
                     /translation="MTSRIDIFRVMLESDPDNTAVLFGLAKEYEKAGRWDDVIETLSL
                     YLERADDEGNAYGMLANACLRTGRRDAARRAYERGAEVALAHGHPSMAQDYRLAIETD
                     FDDD"
     gene            539..2659
                     /locus_tag="VD968_11840"
     CDS             539..2659
                     /locus_tag="VD968_11840"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydrogenase E1 component subunit alpha/beta"
                     /protein_id="HYE15126.1"
                     /translation="MATEVKAREYRGLGRDEMVGIYRTMYLSRRIDDKEIQLKGQNKI
                     FFQISGAGHEAVLVAAGLALRAGYDWFYPYYRDRALCLQLGMTPLEQLLSGVGAEADP
                     NSHGRQMPSHWGHKRLNIVSQSSPTGTQFLQAVGCAEASYRASLIEEIRGRVVGFKGD
                     EVVYCSSGDGTTSEGEFWEALNTASNLRLPVLFLVEDNGYAISVPVEVQTAGGDVSRL
                     VSNFPDLLVSKCDGTDPIESLETLRRAVAHCRARRGPALVHAKVIRPYSHSLSDDEKL
                     YRPDEERTTDAERDPIKRFGALLVEEGFVTQEELQKIKDAVDREVNEAADAALASPQP
                     APETAALLVFSPDVDPTSKEFDAEEGAELSGNAGTMVDLINRCLHEEMARDPAIVVFG
                     QDVADCSREENLDKVKGKGGVFKVTANLQRKFGGARVFNSPLAEANIVGRAIGMATRG
                     MKPVVEIQFFDYIWPAYHQIRNELALMRWRSGGEWKCPVVIRVPVGGYLKGGAVYHSQ
                     SGDTLFTHIPGLRVVYPSNALDANGLLRTAIRSDDPVIFLEHKHLYRQAYNKSQYPPD
                     GFLIPFAKAKTVREGTDLTIVTYGALVQRSLVAAKQAEQQQGINAEVIDLRTLAPYDW
                     EAVARSVKKTNKLIVAHEDTRSHGFGAEVAARVSEELFEHLDAPVRRVAALDTFVAYA
                     PQLEDAILPQSDDVYRAITELYSF"
     gene            2870..3847
                     /locus_tag="VD968_11845"
     CDS             2870..3847
                     /locus_tag="VD968_11845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15127.1"
                     /translation="MSKRLLNIAGCAALVAALSAVCLAQTPQNQQPTTQTTTTTTTQT
                     TQAVQNADGTWTVVEYPAQKEVTVDFLPGPTFSTAKGRAKILRANDGTTVTLDLSGLP
                     ANTTSLNVYAVDPMGKLTSLGPLPITNGAGVHTVVTPLDKFMLVLSPEQNLTSFGPDA
                     NVAFRSAVPQGLAVLPLAHRDREDGAAVGERVAATTVTSVPAYSAPMLNVPGMKRGED
                     TQVKVNLTGELTGARVNFNIEPRKDGPTMITARFHEMKEAPAGKVYTLWAVSPDNKFV
                     KLGQVVNTGTRNEAEIKSETTLQDFGLLITLEDETIPAPRGTVVGTIMP"
     gene            4195..5349
                     /locus_tag="VD968_11850"
     CDS             4195..5349
                     /locus_tag="VD968_11850"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing serine
                     protease family protein"
                     /protein_id="HYE15128.1"
                     /translation="MYKRKLPPWLALILLFAAAAAPASAEESLPELIRRVKPSVVSVI
                     TYNAAGEVAVTGSGFFIRPGQVMTNLHVVEGASRVEVRTFEGKGKTYPVAGLAGVDAD
                     GDLALLSVEMPSERSRVAETTETLPEEGERIFVIGNPLRLEGSVSDGIVSAVREVPSL
                     GRIVQITAPISHGNSGSPVFNMKGQVVGVVTIRVMNGQNINLAMGAQRFTELRGGEGG
                     RSLGFAELAALKGAQKAEGVSDWWYRNGLNSLWLGNYDSALGYFETAVNKNPQRAEAW
                     IQVGFCKVKQGKNQDAIRAFQQALKLKPNSYEALNKLGDAYYYAGNYHKALDAYKQAV
                     AVRPDAAEGYYNLALAYVEVGDRASANAQARTLSRLDPELYKRLAAEIER"
     gene            5404..5913
                     /locus_tag="VD968_11855"
     CDS             5404..5913
                     /locus_tag="VD968_11855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15129.1"
                     /translation="MTPYDSITNPPNYDAIEAERLEQRCKSGAYWFYWIAALSFITSL
                     VSLSGSQWGFIVSLGVTQFVDALARAFSEQAGTAVTVIALLFDATAAAAFALIGYFAS
                     KKLEWVFVLGMVLYGLDGLIFLIAGDWLGIAFHAFALYGIFSGYRACTRLNAMQREQA
                     PPPVAPSAV"
     gene            complement(5989..7404)
                     /locus_tag="VD968_11860"
     CDS             complement(5989..7404)
                     /locus_tag="VD968_11860"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE15130.1"
                     /translation="MRIVLKERQDVFARAAGLCLSVVLALSATAAPARQQSQPAPAAT
                     PAAQRASGDISENAKLVTEFEAGGLKVLLKRREGSQTVVAGLFLRGGSRNVTAENAGV
                     EALMLDVATEASANFPRELMRRELSRTGTSLSYGINYDYSALTLGSTRHHFDRSWEIF
                     ADAALRPSFTPEDFARVKNRVLLGLNNNTDTPDSYLQLLQARVAYAGHPYLNDPRGTV
                     ESVGRLTIEDVRRFHQQMMQTSRMLLVVVGDIDAQKFRQKVEATFGKLPRGDYRATPT
                     PQLSFTAPLVEITERALPTNYVQGVFAAPSPTSDDIYPMRVASAILQNRVFIEVRVRR
                     NLSYAPDAFLNNQAANIGGIYVTSTDANQAVRVMLDEIARLQKQPIGQEELKATAQQF
                     LTRYYLSQETNAAQAGELASYELMGGGWRNSAVFIERLRAVTPEDVQRVARTYMRNLR
                     FVVLGNPQSINKSVFTQQAGE"
     gene            complement(7412..8977)
                     /locus_tag="VD968_11865"
     CDS             complement(7412..8977)
                     /locus_tag="VD968_11865"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE15131.1"
                     /translation="MLKRNLLVFAAALSLVASWPAAAALAEVPAQARGRATPQQQRQA
                     AKPAPSPAAPLAEPAPLVNRVLPNGLEVIVLEDHSVPLVTVELAVRNGSFTEPPELNG
                     LSHLYEHMFFKSNRAIHDREEYIRNIDSLGIIYNGETKEELVNYYFTTTTPNFPVAMR
                     FMRDATLYPGFDQRWYAHHRTSDPKRFEEISESVERQFAQEREVVIGELDRHESNPYG
                     EFLSEMNDRLFYKYPSRKDPGGNRQTVGAATTEMMRLIQSRYYVPNNSAIVVTGDVEP
                     EEVFAMVGRLFGEWPRRPKNPFEEFPLVEHPPLPRSEGVIVTKPVGNVIINIGWHGPS
                     VGKDDAATYAADVFSFILRQPNSRFQRALVDSGLVAAANIGYYTQRNVGPIQVSAQTS
                     PEQARAAVRAIYNEIAHFADPDYYTDEELESAKALLEADDLYSREKLSEYAHTISFWW
                     SSTGLEYFRGYLKRLRATSRADISRYVKTYIQGKPHVGMALMSEEAARQSGLTADDLV
                     GEGASAKARAAGR"
     gene            complement(9218..10798)
                     /locus_tag="VD968_11870"
     CDS             complement(9218..10798)
                     /locus_tag="VD968_11870"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HYE15132.1"
                     /translation="MDTPQIIAGRFRVEREIGRGGMGTVYRASHLGLERPVAIKILKQ
                     EFAALSEVAERFMREARTMARLRHQRAAMIFDAGHLADGRPFIVMEHVEGATLAEALA
                     REGSFEPERAVRVASEICDVLSEAHALGIVHRDLKPSNIMLNDRGVCVLDFGIAKVLA
                     DSTEVTRTHATTESGLIIGTPRYMSPEQCLGHKVGPASDLYSVGVLLYEMLAGRPPFV
                     DPLSAAVLVKQATAPPPPLLSLRPDCPRALASAVHALLAKNPAHRPASAAAARQELER
                     TVVRAAPSAARGEAVEPFASTIGVINGGRFAFTRVATAFVIVAMLFTVLLMWAVGSGR
                     ASAREPYTAGLVPEAVGAAARLSPRALTRRPTPLTPERARGVAESLTRASLADVRLVR
                     AREGQAIAALGDDPVDGMTSLFIIERRGSGGRFAVTERAPLDVEGFRGADWAAEAVDL
                     DGDGYEEVLCTGRTPGDEAGDGRRYVVYAPRTRSVYSLHVAPDADGSSALRATWSPNT
                     QGEQAKLFRHALRQRAFN"
BASE COUNT         1824 a         3681 c         3722 g         1794 t
ORIGIN      
        1 agcggtcgag ctctacggcg gctacggctt cgtcaaggac taccccgtcg agaagctctg
       61 gcgcgactcc aagataggcg ccatctatga aggcacctcg aacatgcagt tgcagaccat
      121 cgccaagctg ctcatagaca accggcagcc gaaggcgcag tagcgggggc ggccagcgct
      181 tatgacttcg cgcattgaca tcttccgcgt aatgctcgag agcgaccccg acaacacggc
      241 cgtcctcttc gggctcgcga aggagtacga gaaggccggg cgctgggacg acgttatcga
      301 gacgctctcg ctctacctcg agcgcgccga cgacgagggc aacgcctacg gcatgctcgc
      361 gaacgcctgc ctccgcacgg gccgccgcga cgccgcccgc cgcgcctacg agcgcggcgc
      421 cgaagtcgcc ctcgcccacg gccacccctc gatggcgcag gactacaggc tcgccattga
      481 gactgatttt gacgacgact gaggctgagt tttattagct tttcggagat aagcaattat
      541 ggcgaccgaa gtgaaggcgc gcgagtatcg cggcttgggc cgcgacgaga tggtcgggat
      601 ctaccgcacg atgtacctgt cgcggcggat tgacgacaag gagattcagc tcaaggggca
      661 gaacaaaatc ttcttccaga tttcgggcgc gggccacgag gccgtgctcg tcgccgcggg
      721 cctggccctg cgcgcgggct acgactggtt ctacccctac taccgcgacc gcgctctctg
      781 cctacagctc ggcatgacgc cgctggagca actcctctcg ggcgtcggcg ccgaggcaga
      841 ccccaactcg cacggccgcc agatgccctc gcactggggc cacaagcgtc tgaacatcgt
      901 ctcgcagtcc tccccgacgg ggacgcagtt cctacaggcc gtcggctgcg ccgaggcgag
      961 ctaccgcgcg tcgctcatcg aagagatcag ggggcgcgtc gtcggcttca agggcgacga
     1021 ggtcgtttac tgctcctccg gcgacggcac gacgagcgag ggcgagttct gggaggcgct
     1081 caacacggcg agcaacctgc gcctgcccgt cctcttcctc gtcgaagata acgggtacgc
     1141 catcagcgtc cccgtcgaag tgcagacggc gggcggcgac gtctcccgcc tcgtctcgaa
     1201 cttcccagac cttctggtct cgaagtgcga cggcacggac ccgattgagt ctttggagac
     1261 tctccggcgc gccgtcgcgc actgccgcgc gcgccgcggc cccgcgctcg tccacgccaa
     1321 agtcattcgc ccctactcgc actcgctctc cgacgacgag aagctctacc ggccggacga
     1381 ggagcgcacc acggacgccg agcgcgaccc catcaaacgc ttcggcgcgc tgctcgtcga
     1441 ggagggcttc gtcacgcagg aggagttgca gaagataaag gacgcggttg accgcgaggt
     1501 gaacgaggcc gccgacgccg cgctcgcgag cccgcagccc gcgcccgaga cggccgcgct
     1561 cttagtcttc tcgcccgacg ttgacccgac ctccaaagag ttcgacgcgg aggagggcgc
     1621 cgagctgtcg gggaacgccg gcacgatggt tgacctaatc aaccgctgcc tgcacgagga
     1681 gatggcgcgt gacccggcga tagtcgtctt cggccaggac gtggccgact gctcgcgcga
     1741 ggagaacctc gacaaggtca agggcaaggg cggcgtcttc aaggtgacgg ccaacctgca
     1801 aaggaagttc ggcggcgcgc gcgtcttcaa ctcgccgctc gccgaggcca acatcgtcgg
     1861 ccgcgcgata ggcatggcga cgcgcgggat gaagcccgtc gtcgagattc agttcttcga
     1921 ctacatctgg cccgcctacc accagattcg caacgagctg gcgctcatgc gctggcgctc
     1981 gggcggcgag tggaaatgcc ccgtcgtcat acgcgtcccc gtgggcgggt atctcaaagg
     2041 cggcgccgtc tatcactcgc agtcgggcga cacgctgttc acgcacatcc ccggcctccg
     2101 agtcgtctat ccgtcgaacg cgctagacgc caacggcctg ctgcgcacgg ccatacgctc
     2161 cgacgacccc gtaatcttcc tcgagcacaa gcacctctac cgccaggctt acaacaagtc
     2221 gcagtacccg ccggacggct tcctcatccc cttcgccaag gcgaagaccg tgcgcgaggg
     2281 gactgacctg acgatcgtca cctacggcgc gctcgtgcag cgttcgctcg tcgccgccaa
     2341 gcaggccgag cagcagcagg gcatcaacgc cgaggtcata gaccttcgca cgctcgcgcc
     2401 ctacgactgg gaggcggtcg cgcgaagcgt caagaagacc aacaagctca tcgtcgccca
     2461 cgaggacacg cgctcgcacg gcttcggcgc cgaggtcgcc gcgcgcgtct ccgaggagct
     2521 gttcgagcac ttggacgcgc ccgtccggcg cgtcgccgcc ctagacacat tcgtcgccta
     2581 cgccccgcag ctcgaagacg cgatactgcc ccagtccgac gacgtttacc gcgccatcac
     2641 cgagctttac agcttctagg ccactcggcg ggcggtcgcc gcgatgccgt acacgaattt
     2701 gtatcgtatc gcttcggccg ccgcccccgc caccctccca agttgttgaa acgaaaagcc
     2761 cctcccggcg gcacgttcgt tgctcttctt ttatggttcc gcttttcggc gggacgtata
     2821 aggggacaaa ttgaatagct tgaactcagc cagaggaggg aaatccagga tgagcaaacg
     2881 tttgcttaac atagcgggct gtgcggcgct cgtggccgcc ctctcggcgg tctgcctcgc
     2941 gcagacgccg cagaaccagc agcccaccac gcagacgact accacgacga ctacgcagac
     3001 gacgcaggcc gtgcagaacg ccgacggtac gtggactgtc gtagagtacc cggcgcagaa
     3061 ggaggtcacg gttgacttcc tgcccggccc gacgttctcg accgcaaagg gccgcgcgaa
     3121 gattctccgc gcgaacgacg gcacgaccgt gacgctcgac ctgtcgggcc tgccggccaa
     3181 cacgacgagc ctcaacgttt acgcggttga cccgatgggt aagctgacct cgctcgggcc
     3241 gctgcctatc acgaatggcg cgggcgttca caccgtcgtg acgccgctcg acaagttcat
     3301 gctcgtgctc tcgccggagc agaacctgac gagcttcggc cccgacgcca acgtggcctt
     3361 ccgcagcgcc gtgccgcagg gcctggccgt gctgcccctc gcgcacaggg atcgcgagga
     3421 cggggccgcc gtcggcgagc gggtcgcggc cactaccgtc acgtccgtgc cggcctactc
     3481 tgcgccgatg ctcaacgtgc cgggcatgaa gcgcggcgag gacacgcagg tcaaggtgaa
     3541 cctgacgggc gagctgacgg gcgcgcgcgt caacttcaac atcgagccgc gcaaggacgg
     3601 cccgaccatg atcacggcac gcttccacga gatgaaggag gcgccggccg gcaaggtcta
     3661 tacgctctgg gccgtctcgc ccgacaacaa gttcgtcaag ctcgggcagg tggtcaacac
     3721 cggcacccgc aacgaggccg agattaagtc cgagacgacg ctccaggact tcggcctcct
     3781 catcacgctc gaggatgaaa ccatccccgc gccgcgcggc accgtcgtcg gcacgataat
     3841 gccgtaggac gattgcggaa tagaaaagcc gagagggttg acgacggcag cgccgtcgtc
     3901 aaccctctcc ttatttaatc cgcaatttcc ttgacagggg gcggccccgt tttgctacat
     3961 tcgagtagcg ggtgaagttc ccgcagaacc ggcctagttg gcctcccccc gccctcccgc
     4021 cacactttcg caacaaacca tttgacatct cgggaattcg cggcataatt gccgctcgcc
     4081 gccggtcttc agaaccggca accgcgaacg gtgcgaagcg cgtctcccgc gactcaccct
     4141 tgggccggcc aagctctttc cgcaggcccg aaacccgttt tgagaaacag acagatgtac
     4201 aaacgcaagc tccccccctg gctcgcgcta atcctgcttt tcgcggcggc cgccgccccg
     4261 gcctcggccg aggagtctct gccggagctg atacgccgcg tcaagccctc ggtcgtctcc
     4321 gtcataacct acaacgcggc gggcgaggtc gccgtcacgg gcagcggctt tttcatccgc
     4381 cccggccagg tgatgacgaa cttgcacgtc gtcgagggcg cgagccgcgt cgaggttcgc
     4441 acgttcgagg gcaaggggaa gacctacccc gtcgccgggc tcgcgggcgt tgacgccgac
     4501 ggcgacctgg cgctcctgag cgtcgagatg ccgtccgagc gctcgcgcgt cgccgagacg
     4561 accgagaccc tgcccgagga gggcgagagg attttcgtca tcggcaaccc cttgcgactc
     4621 gaaggctcgg tctcggacgg gatagtctcg gccgtgcgcg aggtgccaag cctcggccgc
     4681 attgtgcaga taaccgcgcc catctcgcac ggcaactccg gcagccccgt ctttaacatg
     4741 aaggggcagg tcgtcggcgt ggtcactatc cgcgtgatga acgggcagaa cataaacctc
     4801 gcgatgggcg cgcagcgctt cacggagctt cgcggcggcg agggcggccg ctcgctcggc
     4861 ttcgcggagc tggccgcgct caagggcgcg cagaaggccg agggggtctc ggactggtgg
     4921 tacaggaacg gcctgaactc gctctggctc ggcaactacg acagcgcgct cggctacttc
     4981 gagacggccg tcaacaagaa cccgcagcgg gccgaggcgt ggattcaggt cggcttctgc
     5041 aaggtcaaac agggcaagaa ccaggacgcc atacgcgcct tccagcaggc cctgaagctc
     5101 aagcccaact cctacgaggc gctcaacaag ctcggcgacg cctactacta cgcgggcaac
     5161 taccacaagg cgctcgacgc ctacaagcag gccgtcgccg tccgccccga cgcggccgag
     5221 ggctactata accttgcgct cgcctacgtc gaggtcggcg accgcgcctc ggcaaacgcg
     5281 caggcgcgca cgctcagccg gctagacccc gagctgtaca agcgcctcgc cgccgagata
     5341 gagcgctgac cggggcgccc gagccttaca cactcaccgc gggctggaga cctgataaac
     5401 aagatgaccc cttacgactc gattaccaac cccccaaact atgacgcgat agaggccgag
     5461 cgccttgagc agcgctgcaa gtcgggcgcg tactggttct actggatagc ggccctctca
     5521 ttcataacct cgctcgtctc gctctcgggc agccagtggg gcttcatcgt gagcctcggc
     5581 gtcacgcagt tcgtggacgc gctcgcgcgc gccttctccg agcaggcggg cacggccgtc
     5641 accgtaatcg cgctactgtt tgacgccacg gcggccgcgg ccttcgcgct cataggctac
     5701 ttcgcgtcga agaagctcga gtgggtcttc gtcctcggca tggtgctcta cgggctggac
     5761 gggctcatat tcctcatcgc gggcgattgg ctcgggatag ccttccacgc cttcgcgctc
     5821 tacggcatct tcagcggcta ccgcgcctgc acgcgcctca acgccatgca gcgcgagcag
     5881 gcgcccccgc ccgtcgcccc gtccgcggtg taaaaatctt gggggataaa aaagagggga
     5941 agggagatcg agcgtctccc ctcccctctt ttccttttcc ggctctcgct actcgcccgc
     6001 ctgctgcgtg aagacgctct tgttgatgct ctgcgggttg ccgaggacga cgaagcgcag
     6061 gttgcgcatg tacgtgcggg cgaccctctg cacgtcctcg ggcgtgacgg cgcgcagccg
     6121 ctcgatgaag acggcggagt tgcgccagcc gccgcccatc agctcgtagc tcgccagctc
     6181 gccggcctgc gcggcgttcg tctcctggct caggtagtag cgcgtcagaa actgctgcgc
     6241 cgtcgccttc agctcttcct ggccgatggg ctgcttctgt aggcgcgcta tctcgtcgag
     6301 catgacgcgc acggcctggt tggcgtccgt cgaggtgacg tagatgccgc cgatgttggc
     6361 ggcctggttg ttgaggaagg cgtcgggcgc gtaggagagg ttgcggcgga cgcgaacctc
     6421 tatgaagacg cggttctgga gtatggccga ggcgacgcgc atcgggtaga tgtcgtccga
     6481 cgtggggctc ggcgccgcga agacgccctg cacgtagttg gtcggcagcg cgcgctccgt
     6541 tatctcgacc agcggcgccg tgaacgagag ctgcggcgtc ggcgtcgcgc ggtagtcgcc
     6601 gcgcgggagc ttgccgaacg tcgcctcgac cttctgacgg aacttctgcg cgtctatatc
     6661 gccgacgacg acgaggagca tccgggaggt ctgcatcatc tgctggtgga agcggcgcac
     6721 gtcctcgatg gtcaggcggc cgaccgactc gaccgtgccg cgcgggtcgt tcaaataagg
     6781 gtggcccgcg taggcgacgc gcgcctgaag gagttgcagg tacgagtcgg gcgtgtccgt
     6841 gttgttgttc aggcccagga gcacgcggtt cttgacgcgc gcgaagtcct cgggcgtgaa
     6901 gctggggcgc aaggcggcgt cggcgaagat ttcccaggag cggtcgaagt ggtggcgcgt
     6961 gctgccgagc gtcagggccg agtagtcgta gttgatgccg tagctgaggc tcgtccccgt
     7021 gcgcgaaagc tcccgccgca tcagctcgcg cgggaagttt gcgctggcct cggtcgccac
     7081 gtcgagcatg agggcctcga cgcccgcgtt ctcggccgtc acgttgcgcg agccgccgcg
     7141 caggaacagg cccgcgacga ccgtctggct gccctccctg cgcttgagga gcaccttgag
     7201 gccgcccgcc tcgaactccg tgacgagctt tgcgttctcg gagatgtcgc ccgaggccct
     7261 ctgcgcggca ggcgtcgccg caggggcggg ctgcgactgc tgacgcgcgg gggccgccgt
     7321 tgcggagagc gcgagcacga ccgagaggca gagcccagcg gcccgcgcga aaacatcctg
     7381 acgttctttc agcacgattc tcatcatccc ttcacctgcc cgccgccctg gccttcgccg
     7441 acgcgccctc gcctacaagg tcgtccgccg tcaggcccga ctgccgcgcg gcctcctccg
     7501 acatgagcgc catgccgacg tgcggcttgc cctgtatgta ggtcttgacg tagcggctga
     7561 tgtcggcgcg cgaggtggcg cgcaggcgct tcaggtagcc gcggaaatat tccagccccg
     7621 tcgaagacca ccagaagctt atcgtgtgcg cgtactcgga gagcttctcg cgcgagtaga
     7681 ggtcgtcggc ttcgagcagc gccttcgcgc tctcgagctc ctcatccgtg tagtagtcgg
     7741 ggtcggcgaa gtgcgcgatc tcgttgtaga tggcgcgcac ggcggcgcgc gcctgctcag
     7801 ggctggtctg cgcgctgacc tgtatggggc cgacgttgcg ctgcgtgtaa tagcctatgt
     7861 tcgccgcggc gacgagcccc gagtccacga gcgcgcgctg aaagcgcgag ttgggctggc
     7921 gcagtatgaa ggagaacacg tcggccgcgt aggtcgcggc gtcgtcctta cctaccgagg
     7981 ggccgtgcca gccgatgttg atgatgacgt tgccgacggg cttcgtgacg atgacgccct
     8041 cgctcctggg caggggcggg tgctcgacga gcgggaactc ctcgaagggg ttcttcggcc
     8101 ggcgcggcca ctcgccgaag agccgcccga ccatcgcgaa gacctcctcc ggctcgacgt
     8161 cgcccgtgac gactatcgcc gagttgttcg gcacgtaata gcggctctgt atgaggcgca
     8221 tcatctcggt cgttgcggcg ccgacggtct gccggttgcc gccggggtct ttgcggctcg
     8281 ggtacttgta gaagaggcgg tcgttcatct cgctgaggaa ctcgccgtag gggttcgact
     8341 cgtggcggtc gagctcgcct ataacgacct cgcgctcctg ggcgaactgc cgctcgacgc
     8401 tctcggaaat ctcctcgaag cgcttcgggt ctgaggtgcg atggtgcgcg taccagcgct
     8461 ggtcgaagcc ggggtagagc gtcgcgtcgc gcatgaagcg catggcgacg gggaagttcg
     8521 gcgtcgtggt cgtgaaatag tagttgacca gctcctcttt ggtctcgccg ttgtagatga
     8581 tgccgagcga gtcaatgttg cgtatgtact cctcgcggtc gtgtatggcg cggttcgact
     8641 tgaagaacat gtgctcgtag aggtgcgaga ggccgttcaa ctccggcggc tccgtgaacg
     8701 agccgttgcg cacggccagc tcgacggtga cgagcggcac cgagtggtct tcgagcacga
     8761 tgacttcgag gccgttcggg agcacgcggt tgacgagcgg cgcgggctcc gcgagcgggg
     8821 ccgcgggcga aggggcgggc ttcgccgcct gtctctgctg ctgcggcgtg gcgcgcccgc
     8881 gcgcctgcgc gggaacttcc gcgagcgcgg ccgccgccgg ccatgacgcc accagcgaga
     8941 gcgccgcggc gaagacgaga agattgcgtt tcagcacagt tcccttccct gtagctccag
     9001 aggggtttta caccgggggg acgatcagcg agaggcacaa ccagcgggtg cgagactttc
     9061 gctcatgccg acaccggccc gaattttgct ccaagctttg agggcgatga taccacgcgg
     9121 ggttgctctc gggaaaaagt gggggccgaa aggcggagag ggcggggccg ctgagtggcg
     9181 cccgccctcg tctgccttta tgactttagc tctcgggtca gttgaacgcg cgctggcgca
     9241 gcgcgtggcg gaagagcttg gcctgctcgc cctgcgtgtt gggcgaccag gtggcgcgca
     9301 gggcgctgga gccgtcggcg tccggcgcga cgtggaggct atagacggag cgcgtgcgcg
     9361 gcgcgtaaac gacgtagcgg cgcccgtcgc cggcttcgtc accgggcgtg cggcccgtgc
     9421 agagcacctc ctcgtagccg tcgccgtcga ggtcaacggc ctcggcggcc cagtctgcgc
     9481 cgcggaagcc ctcaacgtct aagggcgcgc gctcggtcac cgcgaagcgg ccgcctgagc
     9541 cccttcgctc gatgatgaag aggctggtca tgccgtcaac ggggtcgtcg ccgagcgcgg
     9601 ctatcgcctg cccctcgcgc gcgcgcacga gccgcacgtc ggccagcgag gcgcgcgtga
     9661 gcgactcggc caccccgcgg gcgcgctcgg gcgtgagcgg ggtgggccgc cgcgtgaggg
     9721 cgcgcggcga aagacgcgcg gcggcgccga cggcctcggg gacgagcccc gcggtgtagg
     9781 gctcgcgcgc gctcgcgcgc cccgagccga cggcccacat gagaagcacg gtgaagagca
     9841 tcgcgacgat gacgaaggcg gtcgcgacgc gcgtgaaggc gaagcgcccg ccgttgatga
     9901 cgccgatggt cgaagcgaaa ggctcgacgg cctcgccgcg cgcggccgag ggcgcggcgc
     9961 gcacgacggt tcgctcgagc tcctgcctcg ccgccgccgc gctcgccggg cggtgcgccg
    10021 ggttcttggc gagcagcgcg tggaccgccg acgcgagcgc gcgcgggcag tcgggccgga
    10081 gcgagagcag gggcggcggc ggcgccgtcg cctgcttgac gagcacggcc gccgagagcg
    10141 ggtcaacgaa gggcgggcgg ccggctagca tctcgtagag cagcacgcca acgctgtaga
    10201 ggtctgaggc cgggccgacc ttatggccga gacactgctc gggcgacatg tagcgcggcg
    10261 tgccgatgat gagccccgac tcggtcgtcg cgtgcgtgcg cgtgacctcg gtcgagtccg
    10321 cgaggacttt cgcgatgccg aagtcgagca cgcagacgcc gcggtcgttc agcattatgt
    10381 tcgagggctt gaggtcgcgg tggacgatgc cgagcgcgtg ggcttcggag agcacgtcgc
    10441 agatttcgga ggcgacgcgc acggcgcgct cgggctcgaa gctgccctcg cgggcgagcg
    10501 cctcggcgag ggtggcgccc tcgacgtgct ccatgacgat gaaggggcgg ccgtcggcga
    10561 ggtggccggc gtcgaatatc atcgcggcgc gctggtggcg cagccgcgcc atcgtgcggg
    10621 cctcgcgcat gaagcgctcg gcgacctcgg agagcgcggc gaactcctgc ttgagtatct
    10681 tgattgcgac ggggcgttcc agaccgaggt gggaggcgcg gtaaaccgtg cccatgccgc
    10741 cccttccgat ctcccgctcg acgcggaatc gtccggcgat tatctggggg gtgtccatct
    10801 gttgaccctc tgttcgggaa agggtcgctc cgacggcgcg gcagccgtct agtccttcag
    10861 cggggcggca gaagagaaaa gggggcgcgg ccgaacggca cgagtgaaac gggctttcga
    10921 ctgttcgctt tggggagcct gttccgagcc ctgcctctcc gacgtgaggc gcgggcagcc
    10981 gagagtttag catttttccg ccgcagcgca acgctaaatt a
//
LOCUS       DASPKR010000442         2522 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_840852, whole genome shotgun sequence.
ACCESSION   DASPKR010000442 DASPKR010000000
VERSION     DASPKR010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2522)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2522
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_840852"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..740)
                     /locus_tag="VD968_11875"
     CDS             complement(<1..740)
                     /locus_tag="VD968_11875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15133.1"
                     /translation="MSENTNPDSLPSVAIIVLNFNTTELTDALAHYLEHDLRYDNKKI
                     YVVDNGSTRPCNSATHRLPENLGFTRGMHEGYLIASSEHSFDAYWFLNSDVGFEHGND
                     VLLNLVDVLFSSPLYGQIAPQHNSPHKFMEHAESEAHAVPYLEPTATLIKASTLETVG
                     FWDLSLTHGWGVDYDYGYRVRCAGLSNVLTSRARITHKEHKSISDFPAYVTQASAQMN
                     AILSQKYGENWGRVMAMEPNVVPLILSC"
     gene            complement(807..>2522)
                     /locus_tag="VD968_11880"
     CDS             complement(807..>2522)
                     /locus_tag="VD968_11880"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE15134.1"
                     /translation="ALHKAGVRVTVVNLKPHSREVRDPLVESLSGRPPADVDFHLFHG
                     IPPQWARMASGLRNVIGMTVWETDSMPAQWRPALERCISVWLPCQYNVTVFGEALGSP
                     VFKLPHALMPPAGPDCAARGAEALQGISPGDFVFYSIFEWQERKSPQAMLEAYMRAFA
                     DEQDVVLFIKAGPGAARAAAHDLEQARRATGSRARVELRCEAWPDESIESLHARGDCY
                     VSLHRGEGWCYPLFEAAARGTPVVATNYSGPLEYLRPGENLLVRCEPSPVRQQYLYYH
                     SGMRWAEPDISHAAELMRRAYTDRQSVRERAAAAAERIRNDYSQEAVGRLARGQLLSL
                     LRQTDGQKWKRLGGEGYGAVLKPVPPIPGSWYDEGYFEDGSKSNWDRGYNWRLFSGLF
                     RRTASYLTGILTESESYLDVGCAKGFLVQALREQGKDCLGFDHSRWAIENANECVKPY
                     LRLAGVDDFNFERPFDVLLAFSIFESLTEAQLDSFLSRSRAWARQALVATITSFESEG
                     EERSILSGDRDLSHIQIRPRSWWHEKFVAAGWRQDALHRVVENAFRNHPLATAMKWKV
                     YVYAP"
BASE COUNT          481 a          744 c          807 g          490 t
ORIGIN      
        1 tcgcagctca ggatgagcgg cacaacgttc ggctccattg ccattaccct tccccaattc
       61 tccccgtact tttggctcaa aatcgcattc atctgcgcac tggcctgcgt gacgtacgcc
      121 gggaagtcgg agattgactt atgctctttg tgtgtgattc tggctcggct cgtcagtacg
      181 tttgaaagcc ccgcgcagcg aactctatag ccgtagtcgt agtccacgcc ccagccgtga
      241 gtcaggctca agtcccaaaa acctacggtc tcaagtgtag aggctttaat aagcgtcgcc
      301 gtcggctcaa ggtaaggcac ggcatgagcc tcggactcgg cgtgctccat gaatttgtgc
      361 ggtgaattgt gttgcggggc gatctgtcca taaagaggcg aggaaaagag cacatcaacg
      421 agattgagga gcacatcgtt gccgtgctcg aagcctacgt cggagtttag aaaccagtaa
      481 gcgtcgaaag agtgctcgct cgaggcaata aggtagccct cgtgcatgcc gcgtgtgaag
      541 ccgaggttct ccggcagcct gtgtgtcgca gagttgcacg gccgcgtaga gccgttatca
      601 acaacataga tcttcttatt gtcgtaacga aggtcatgtt ccagatagtg cgcaagcgcg
      661 tctgtcagtt cagtcgtatt gaagttcaaa acgatgatcg cgacactcgg caggctatcc
      721 ggatttgtat tctcgctcat atcgaagcct ctggcgttat cggacgcgca gccgttttgg
      781 ttaataagac ttcctgaaga ggttgctcag ggagcataga cataaacctt ccatttcata
      841 gccgtcgcga gcgggtggtt tcggaaggca ttttctacga cccggtgcag cgcgtcctga
      901 cgccagccgg ccgcgacgaa cttctcgtgc caccaggagc gggggcgaat ctggatgtgg
      961 gacaagtctc tgtcgcccga aaggattgag cgttcttccc cctcgctctc gaaagacgtg
     1021 atggtagcga ctaaggcttg gcgcgcccac gcacgggagc gcgaaagaaa ggagtcgagc
     1081 tgggcctcgg tgaggctctc gaaaattgag aaggcgagca gaacgtcgaa gggccgctcg
     1141 aagttgaaat cgtccacgcc cgcgagccga aggtatggct tcacgcactc gttagcattt
     1201 tcgattgccc agcggctgtg gtcaaaaccc agacagtctt tgccctgctc tcggagggcc
     1261 tgcacgagga agcccttcgc gcagcccacg tcgaggtagg attccgattc cgtcaggatg
     1321 ccggttaaat atgaggccgt tcggcggaac agccccgaga aaagtcgcca gttgtagccg
     1381 cgatcccagt tgcttttcga gccgtcctcg aagtagccct cgtcgtacca actccctggg
     1441 ataggaggca cgggctttag cacggcgccg tacccctccc ccccgaggcg cttccatttc
     1501 tgaccgtcgg tctgcctcag aagtgagagc agttgcccgc gggcgagtcg gccgacggcc
     1561 tcctgagagt aatcattgcg tatccgttcg gccgccgcgg cggcgcgctc tcgaactgac
     1621 tggcggtcgg tgtaggcgcg ccgcatcagc tctgccgcgt gactgatgtc gggctccgcc
     1681 cagcgcatgc ccgagtggta ataaaggtat tgctgcctga cgggggacgg ctcacatcgt
     1741 acgaggaggt tctcgccagg cctcaagtat tcgagggggc cggaatagtt tgtggcgacg
     1801 accggcgtgc ctctcgcggc ggcctcgaag agcggataac accagccctc cccgcggtgg
     1861 agcgagacgt agcagtcgcc gcgcgcgtga agggattcaa tgctttcgtc gggccaagcc
     1921 tcgcagcgca gctcgacgcg agcccgcgag ccggtcgcgc ggcgcgcctg ttccaagtcg
     1981 tgggcggcgg cgcgcgccgc gccggggccg gccttgatga agagcacaac gtcctgctcg
     2041 tcggcgaagg cgcgcatgta ggcttcgagc atcgcttgcg ggcttttgcg ctcctgccac
     2101 tcgaagatgc tgtagaagac aaaatcgccg ggagaaattc cttgaagggc ttcggcgccg
     2161 cgcgccgcgc agtccggtcc ggccggcggc atcagcgcgt gcgggagttt gaagacgggg
     2221 ctgccgaggg cctcgccgaa gaccgtgacg ttgtactggc acggcagcca gacgcttatg
     2281 cagcgctcga gcgcggggcg ccactgcgcc ggcatcgaat cggtctccca gaccgtcatg
     2341 ccgatcacgt tcctgaggcc cgaggccatc cgcgcccact ggggcgggat gccgtggaag
     2401 aggtggaagt ccacgtcggc gggcgggcgg cccgagagcg actcgaccag cgggtctcga
     2461 acctcgcgcg aatggggctt caggttcacg accgtgacgc ggacgccggc cttgtggagc
     2521 gc
//
LOCUS       DASPKR010000443         2096 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1744032, whole genome shotgun sequence.
ACCESSION   DASPKR010000443 DASPKR010000000
VERSION     DASPKR010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1744032"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..457
                     /locus_tag="VD968_11885"
     CDS             <1..457
                     /locus_tag="VD968_11885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15135.1"
                     /translation="RAAEEERLALAQVAEDFQRLQVVNNRMMAGAFKSHEPDYAAVAE
                     ATAEIRRRADRIKVNLALPAPDEKEKEEARKRPEPKRAEDAAQLKAALLTLDRAVMSF
                     VSSPLFKNPSVVEVTQAVKARQDLDSVIELSRLIGKDAERLGKAAAKAR"
     gene            complement(547..>2096)
                     /locus_tag="VD968_11890"
     CDS             complement(547..>2096)
                     /locus_tag="VD968_11890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15136.1"
                     /translation="ANFDLNSALGFTSEQIIGPNTFDVGQNPAPLFTGFSPNVRGFEV
                     APGTITPRLTFPLTLPSDEAQRIEQSLDDTLTTPHNYSFNVSYGRELGKGLSFETSYV
                     GRMARNLLAARDIMHLNNIRDPQSGMTWYEAINRLIDHRYSLTPIESVPNLPYFDNLF
                     PGAGFLLELFGVPGLTNTQAVYTLIARPDVGGFDITDYTFIQTFLDDQPFARHNNTFF
                     HPQYAALSTFSTIARSNYHSGQFSLRHRFRNDVAFDFNYTLSHSLDSASGLQASGAYA
                     SAFIVNALDPDQNYSNSDFDVRHVINANWLVALPLGRNRWIGHDMPRALDAAIGGWQL
                     TGIFRWNSGLPTGEPFQADRWATNWNVQSNMVRVCAANASVTRNGPDGSPNLFSNRDA
                     VFRCFREPRAGEVGDRNILRGDPYISLDLGLTKNFRMPWEGHNLQFRWEVFNVTNTQR
                     FASASLLGFGLPPDPFMPFDDDFDPETPDVLPDVPRDFGKYTATQTPLNEPRAGRVMQ
                     FALRYVF"
BASE COUNT          357 a          596 c          812 g          331 t
ORIGIN      
        1 gcgggcggcc gaggaggagc gcctcgcgct cgcgcaggtg gcggaagact tccagcgcct
       61 tcaggtcgtc aacaacagga tgatggccgg ggcgttcaag tcgcacgagc cggactacgc
      121 tgcggtggcc gaggcgaccg ccgagataag gaggcgcgcc gaccgcatta aggtaaacct
      181 cgcgctgcct gcgccggacg agaaggagaa ggaggaggcg cgcaagcggc ccgagccgaa
      241 gagggccgag gacgccgcgc agttgaaagc ggcgctgctc acgctcgacc gcgcggtgat
      301 gagcttcgtc tcaagcccgc tctttaagaa cccctcggtc gtcgaggtca cgcaggccgt
      361 taaggcgagg caagacctcg actccgtcat cgagctcagc cgccttatcg gcaaggacgc
      421 cgagcggctg ggcaaggccg cggccaaggc tcgctgagca gacggcccgg aagggagcat
      481 aaaagaagcg gggccggcct ctcatcaaga ggccggcccc gctttcgtta cagcgggcgc
      541 gcgcttttag aagacgtagc gcagggcgaa ctgcatgact cgcccggcgc gcggctcgtt
      601 gagcggcgtc tgcgtggccg tgtacttgcc gaagtcgcgc ggcacgtcgg ggaggacgtc
      661 cggcgtttcc gggtcgaagt cgtcgtcgaa gggcatgaac gggtcgggcg gcaggccgaa
      721 gcccagcagg ctcgcgctcg cgaacctctg cgtgttagtc acgttaaaga cctcccagcg
      781 gaactggagg ttgtggccct cccagggcat gcggaagttc ttcgtcaggc cgaggtcgag
      841 cgagatgtag gggtcgccgc gcagtatgtt gcggtcgccc acctcgccgg cccgcggctc
      901 gcggaagcag cggaagacgg cgtcgcggtt gctgaagagg ttgggcgagc cgtcggggcc
      961 gttgcgggtg acggacgcgt tggccgcgca gacgcgaacc atgttcgact gcacgttcca
     1021 gttcgtcgcc cagcgatcgg cctggaaggg ctcgccggtg ggcagccccg agttccagcg
     1081 gaatatgccg gtgagctgcc agccgccgat cgcggcgtcg agcgcccgcg gcatgtcgtg
     1141 gccgatccag cggttgcgcc ccagggggag cgcgaccagc cagttggcgt tgatgacgtg
     1201 gcgcacgtcg aagtcggagt tcgagtagtt ctggtcgggg tcgagcgcgt tgacgatgaa
     1261 ggccgacgcg taggcgcccg acgcttgcag tcccgacgcg ctgtcgagcg agtgcgagag
     1321 cgtgtagttg aagtcgaacg ccacgtcgtt gcggaagcgg tggcgcaggg agaactgccc
     1381 cgagtggtag ttagaccgcg ctatcgtcga gaaggtcgag agcgcggcgt actgcgggtg
     1441 gaagaaggtg ttgttgtggc gggcgaaggg ctggtcgtcc aggaacgtct ggatgaacgt
     1501 gtagtcggtg atgtcgaagc cgccgacgtc cgggcgcgca ataagcgtat agacggcctg
     1561 ggtgttggtc agccccggca cgccgaagag ctcgagcagg aagcccgcgc cggggaagag
     1621 gttgtcgaag taggggaggt tcggcacgct ctcgatgggc gtcagcgagt agcggtggtc
     1681 aatgaggcgg ttgatcgcct cgtaccacgt catccccgac tgcgggtcgc ggatgttgtt
     1741 gaggtgcatg atgtcgcgcg cggcgaggag gttgcgcgcc atgcgcccga cgtaggaggt
     1801 ctcgaacgag agccccttgc ccagctcgcg cccgtaggag acgttgaagc tgtagttgtg
     1861 gggcgtcgtc agcgtgtcgt cgagcgattg ctcgatgcgc tgcgcctcgt ccgaggggag
     1921 cgtgagcggg aacgtgagcc gcggcgtgat agtgccgggc gcgacctcga agccgcgcac
     1981 gttcgggctg aagccggtga agagcggggc cgggttctgt ccgacgtcga aggtgttcgg
     2041 gccgatgatc tgctcggagg tgaagccgag cgccgagttg aggtcgaagt tggcgg
//
LOCUS       DASPKR010000444         4179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_322388, whole genome shotgun sequence.
ACCESSION   DASPKR010000444 DASPKR010000000
VERSION     DASPKR010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4179)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4179
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322388"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(130..1002)
                     /locus_tag="VD968_11895"
     CDS             complement(130..1002)
                     /locus_tag="VD968_11895"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE15137.1"
                     /translation="MRVNADLVAVPLFVTDKAGRRVAGLAREDFEVFDEGRRVEATYF
                     AAGAERVALLFLLDASGSTRDIITQQRETALALFSRFGEHSRVAVMQFRERPELRLTF
                     TNDLRAARRAFQIDSRPDSRTAIFDAALAAVRGFALSGADPAERRIVVLISDGLDTAS
                     ETGAAVAINEAREAGVSFYVIHVPLFAPRDGKLVARRPSKGFKDLAEKTGGQFFTVGD
                     AASSLDPRAEHDLRPIFRAVAEDLAGQYVVGYHASAAPRKAGRHRVEVRLSDKRRKLR
                     VRQLRDAYEQRGGG"
     gene            1499..1882
                     /locus_tag="VD968_11900"
     CDS             1499..1882
                     /locus_tag="VD968_11900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15138.1"
                     /translation="MSDSRKNIGWAATGRRAATATLLLALLAHAFFVSTTHLHRAQRG
                     GAGAAPVSASVGRDERAGGLPTAGAHAQCLLCRLQRNLALGLRHSAPSLNPPGPGPAH
                     VEFRQEPFVSLTHLSLAKGRAPPAA"
     gene            2012..>4179
                     /locus_tag="VD968_11905"
     CDS             2012..>4179
                     /locus_tag="VD968_11905"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE15139.1"
                     /translation="MRQRIHLTASLLSVLVLLSPAGGRAQTAAAAGKVSGSITLADGG
                     TPLHNVIVTIVQLKRSVETDEAGGYVFEQVPPGTYTILAHMEGFPDATGQVKVTAGAG
                     AELDFVLRLTGLKEEVTVTATGQEQARFEAFQAVTTLDSIRISEESHPSLGEVLDKEP
                     GVAKRSFGPGSSRPVIRGFDGDRVLVTQDGVRSGSLGSQSGDHGEPIDVLSLERIEVV
                     KGPATLLYGSSAIGGVVNAVTGHDYAHEGWRGYFTGISGTANSQGGASGGLEYGTGKW
                     MFWGNGSAQRTGDYDTPLGRIPNSETRNLYGLGGFGWYGGKSFLSASYSYDTRRFGVP
                     FAGRFEGGEGDEATAASAFTGALFAPAAQEEEEAQIDLKMRRHDFQINGGFRDLGSFL
                     DSFRMTVDYTDYQHKELEGEEVGTVFNNKQLLFRGVFGQRKTGRLTGSFGFSGFRRDY
                     ETVGAEVLAPPVLQNNFSVFGLETLDFERVSFQFGGRFEHNGYDAEGLRDRSFDGFSG
                     AAGVRFNLWRGGAFVFNYTHSRRAPALEELYNFGPHVGNLTFEIGNPDLVMERNDGFD
                     FSLRHQSPRVRAEANFYYYDLKNFVFLAPVDEDGDGTVDTEEGLTVARYLQGNSRYAG
                     TEVDLEFALHRALWLNLGLDAVNAQLDDGTPLPRIPPLRGRVGLDWRYRGLSLRPEAV
                     MVSDQEELFPTETRTAGYTVFNLVGSYTLARPHYAQIFSV"
BASE COUNT          698 a         1386 c         1409 g          686 t
ORIGIN      
        1 tccgagacgc tcacgagcgc ccggcggatt ctcttaagcc cttcgggagt ttgttctgcc
       61 atgatttctt ccgcgggtga aaaggatgaa aaagcggctg gtggatttta acgcgacgcg
      121 cgccagccgt cacccgccgc ccctctgctc gtaagcgtcg cggagttggc gcacgcgcag
      181 cttccgccgt ttgtctgaga gcctgacttc tacgcggtgc ctgccggcct tacgcggggc
      241 ggcgctggcg tggtagccga cgacgtactg gccggcgagg tcttcggcga cggcgcggaa
      301 gatggggcgc aagtcgtgct cggcgcgagg gtcgagcgag gaggcggcgt cgccgacggt
      361 gaagaactgg ccgcccgtct tctcggcgag gtctttgaag cccttcgacg ggcggcgcgc
      421 aacgagtttg ccgtcgcggg gcgcgaatag tgggacgtgt atgacgtaga aggagacgcc
      481 ggcctcgcgc gcctcgttga ttgccacggc cgcacccgtt tcgctcgcgg tgtcgaggcc
      541 gtcgctgatg agcacgacga tgcggcgctc ggccgggtcg gccccgctca gagcgaagcc
      601 gcggacggcg gcgagggctg cgtcgaagat ggctgtgcgg ctgtcggggc gcgagtcaat
      661 ctggaaggct cggcgcgcgg cgcggaggtc gttcgtgaac gtgagcctca actccgggcg
      721 ctcgcggaac tgcatgacgg ccacgcgcga gtgctcgccg aagcgggaga agagggcgag
      781 cgccgtctca cgctgctgcg tgatgatgtc gcgcgtgctg cccgaggcgt cgagcaggaa
      841 gagcagtgca acgcgctcgg cgccggccgc gaagtatgtg gcctcgacgc gccggccctc
      901 atcaaacacc tcgaagtcct cgcgggcgag gccggccacg cggcggcccg ctttatccgt
      961 gacgaagagc ggcacggcga cgaggtctgc gttcacgcgc acgacctctt catcggggga
     1021 ctgcgcagcc tcgccctgag cgcggacggc cgaaggcgcc gttaagcaga ttagtgccag
     1081 cgttactagg gttgacgaga aagcgggagc gcggggcggc cggaaggcga gccgcgggag
     1141 cgcggggcgc gggtgtggca tgccgccggg ctagaacagg aagcgcccga agaggagaat
     1201 gctcaggata acggcaagcg tgatgatgat gattttgata aggctcacag ccggttcctc
     1261 acgtcgaaag ctcgttcgac tctttgcaag agcggcattt tacgggcgcc cggagcggcg
     1321 tgtcaacgtt ttgaaggtcg ctcggggccg gccctggttt tcgcgattct gcaccgaaat
     1381 acgaggaatc gtcccgcctg gttccgaaac gggcgggacg tgcgcttgcg tttttgcccc
     1441 ggcaggattg gtgctaatat ctgcccaaat ttcttacgcc ctagagtttt gagggacttt
     1501 gagcgatagc cggaagaata ttggctgggc cgcgacgggg cggcgggcgg cgacggccac
     1561 gctgctgctc gccctcctgg cgcacgcctt cttcgtcagc acgacgcacc tgcaccgtgc
     1621 tcagaggggc ggcgccggcg cggcgcccgt ctcggcgagc gtcggccgcg acgagcgcgc
     1681 gggagggttg ccgacggccg gcgcgcacgc gcagtgcctg ctctgccgct tgcaacgcaa
     1741 cctcgcgctc ggccttcgcc actcggcccc ttcgctcaac ccccccggcc ccgggccggc
     1801 ccacgtcgaa tttcgccagg agcccttcgt cagcttaacg cacctctcgc tcgctaaggg
     1861 ccgcgcgccg cccgccgcat aagtcaaaca ccccggaggc atccgaaggc cctcgacgca
     1921 agccttttgc ccttcccttg aaagggcgga aggcccgcgc gccggggccg cggggctttg
     1981 ctaaatccac aagcattcat aaggagttct catgcggcag cggattcatc tcacggcgtc
     2041 acttctctca gtcctcgttt tactctcacc ggcgggcggg cgcgcgcaga cggcggcagc
     2101 ggccgggaaa gtctccggct caattacgct agccgacggc ggcacgccgc tgcataacgt
     2161 catcgtcacc atcgtacagc tcaagcgctc agttgagacg gacgaggcgg gcggctacgt
     2221 cttcgagcag gtgccgcccg gcacctacac gatcctcgcg cacatggaag gcttccccga
     2281 cgcgacgggg caggtgaaag tcacggccgg cgcgggcgcc gagctcgact tcgtgctgag
     2341 gctgactggc cttaaggaag aagtgaccgt gacggcgacg gggcaggagc aggcgcgctt
     2401 cgaggcgttc caagccgtca cgacgctcga ctcgataagg ataagcgagg agagccaccc
     2461 ttcgctcggc gaagtcttag acaaggagcc gggcgttgcg aagcgcagct tcggccccgg
     2521 cagctcgcgc cccgtcatac gcggcttcga cggcgaccgc gtgctcgtca cccaggacgg
     2581 agtgcgctcc ggctcgctcg gctcgcagtc gggcgaccac ggcgagccga ttgacgtgct
     2641 ctcgctcgag cgcatcgagg tagtcaaagg ccccgcgact ctgctctacg gcagcagcgc
     2701 catcggcggc gtcgtcaacg ccgtgacggg ccacgactac gcgcacgagg gctggcgcgg
     2761 ctacttcacc gggataagcg ggacggcgaa cagccagggc ggcgcgagcg gcgggctcga
     2821 gtacggcacg ggcaagtgga tgttctgggg caacggaagc gcacagcgca cgggcgatta
     2881 cgacactcct ctcggccgca taccgaactc cgagactcgg aacctttacg gcctcggcgg
     2941 cttcggctgg tacggcggca agagtttcct gagcgcaagc tacagctacg acacgcgccg
     3001 cttcggcgtc cccttcgccg ggcgcttcga gggcggggaa ggggatgaag ccaccgccgc
     3061 ttcggccttt acaggcgcgc tgttcgcccc ggctgcgcag gaggaagagg aggcgcagat
     3121 tgacctgaag atgcgccgcc acgactttca aatcaacggc ggcttccgcg acctcggctc
     3181 cttcctcgac tcgttccgca tgacggttga ctacaccgac taccagcaca aggagcttga
     3241 gggcgaagag gtcggcaccg tcttcaacaa caagcagctc ctcttccgcg gcgtcttcgg
     3301 ccagcgaaag acgggccgcc tgacgggcag cttcggcttc tcgggcttcc gccgcgacta
     3361 cgagaccgtc ggcgccgagg tgcttgcgcc gcccgtcttg cagaacaact tttccgtctt
     3421 cggcctcgaa acgcttgact tcgagcgcgt ctccttccag ttcggcgggc ggttcgagca
     3481 caacggctac gacgccgaag gcttacggga tcgctccttc gacggcttct ccggcgcggc
     3541 cggcgtccgc ttcaacctct ggcggggcgg cgccttcgtc ttcaactaca cgcactcgcg
     3601 ccgcgcgccc gccctcgaag aactttacaa cttcggcccg cacgtcggga acctcacctt
     3661 cgagataggc aaccccgacc ttgtgatgga gcgcaacgac ggcttcgact tctcgctccg
     3721 acatcagtcg ccgcgcgtgc gcgccgaggc gaacttttac tactacgacc tcaagaactt
     3781 cgtcttcctc gcccccgttg acgaggacgg cgacggcacg gttgacacgg aagagggcct
     3841 cacggtcgcg cgctaccttc agggcaacag ccgctacgcg gggacggaag ttgacctgga
     3901 attcgcgctc cacagggcgc tctggctcaa cctcgggctc gacgccgtga acgcgcagct
     3961 tgatgacggg acaccgctgc cgcgcatacc gcctctgcgt gggcgcgtcg ggctcgactg
     4021 gcgttaccgc ggcctgagcc tacggcccga ggccgtcatg gtcagcgacc aggaagagct
     4081 tttcccgacc gagacgcgca cggccggcta caccgtcttc aacctcgtcg gctcttacac
     4141 gctcgcgcgc ccgcattacg cgcaaatctt ctccgtcaa
//
LOCUS       DASPKR010000445         4948 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_65327, whole genome shotgun sequence.
ACCESSION   DASPKR010000445 DASPKR010000000
VERSION     DASPKR010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4948)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4948
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65327"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VD968_11910"
     CDS             <1..324
                     /locus_tag="VD968_11910"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15140.1"
                     /translation="LVYNAAQRFEEAAESFRLVLRSQPKIAEVHENLAEALYGLRKYE
                     EAADAAGRAIALRPAEAGAYYIAGMAHASLGRREQALASLEKLRELKADKLAAALQNF
                     VEKKK"
     gene            complement(480..3404)
                     /locus_tag="VD968_11915"
     CDS             complement(480..3404)
                     /locus_tag="VD968_11915"
                     /inference="COORDINATES: protein motif:HMM:NF038114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HYR domain-containing protein"
                     /protein_id="HYE15141.1"
                     /translation="MAALSHSALLAAPVQFGPEDIAAYEDDCTTPKTSFEAGDVVCAK
                     VSGLLLGPRRIYWISPNGGIVQTDAISQTSLTATRTVSVRGEWGLYLASEEDGSLRTS
                     SFFSVRDPGNLSAELAVVNLIDRRVSSFAAGGSIRYLVAVANRGPDAATNVSLTGQAP
                     NDSTFDESSQESGPAFTCALSGEMPCTIASLAPGDIAVFSFVYNVNSGVPTGTEISYT
                     VDVDSDTEELHEGNNSSTAVAAITGEVTEETCALECPNDITVTADTEQNGVRGAFVTF
                     GAAEGFGDCGALTASHTSGSFFPAGQSFVTFSSEQGGGGCTITINVVDAPAPGITCPP
                     DKSATADPGELEASVEVGTPATTGTVLSVVGVRSDGLTRSLSDPYSVGTTTITWTARD
                     KAADPQTGLFPPDTRSATCQQRVVVTSNDAPTITCPADKTFDAPEGHCEMTLSAAQIG
                     TPVTTGNNVEVVAVRSDRLPLTSPFPANDTEITWTATDAAGRVTSCTQTITVKASAGN
                     APPVLNVPPDVEVLTNSCTALVDDELGVATATGACGTRVRITRTGIPTRTFLNRQIPT
                     FIFPVGTTVITYTATDSAGNSTTGTQRVVVKERSVTPPTVNAPDDIVVNTGAGAASCG
                     VVVSDSALGSATATDNCPGVTVSRSGVPAGNFFPVGDTYVTYTATDASGYTATDVQKV
                     TVVDDTPPTIAAPADVTLYTGAGATSCGLTVANLDAALGTATANDNCPGVQVARSGVP
                     AGSFFPLGETTVTYTATDARGNKASATQKVTVVDNTPPVITPPPDITVYLPLNSTATS
                     MPVTYPVAATATDNCPGTVSIGYSHASGSVFSVGPTVVTITATDVHNNPATATFTVTV
                     LYNFTGFFSPVENGSVFNLVKAGQSVPMKFSLSGNKGPDILAADSPTSAAIACPGNPA
                     INDVSEVYTLTAGSSGLTYDALSDQYKYVWKTESSWVGACRQFNLKLNDGSVHKAYFK
                     FK"
     gene            4019..>4948
                     /locus_tag="VD968_11920"
     CDS             4019..>4948
                     /locus_tag="VD968_11920"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012321776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006108 - malate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HYE15142.1"
                     /translation="MTKEATEAKAGVRVESDSMGEIEVAADRYWGAQTERSLHHFHIG
                     GDVMPREMIRALGILKKAAALVNEDLGKLPADKARLIERAADEVIEGRLDEHFPLRVW
                     QTGSGTQTNMNANEVISNRAIELAGGVMGSKKPVHPNDDVNMSQSSNDTFPTAMHIAA
                     AEQWNALIPEVERLRDTLAAKAQEYCDVVKIGRTHLQDATPLTVGQEMSGWAEMLTRD
                     IERLRSALPGLYDLAIGGTAVGTGLNAHPEFAERAAAKIAELTGLPFRSHPNKFAALA
                     AHDEIVFASGALKTLAASLMKIANDVRWLASGPR"
BASE COUNT          780 a         1548 c         1802 g          818 t
ORIGIN      
        1 ctcgtctata acgccgcgca gcgcttcgag gaggcggccg aatccttccg gctcgtgctg
       61 cgctcgcagc cgaagatagc cgaagtccac gagaacctgg ccgaggctct gtacgggctt
      121 cgcaagtacg aggaggcggc cgatgcggcc gggcgcgcaa tcgcccttcg gcccgcagag
      181 gccggcgcgt actacatcgc cgggatggcg cacgcctcgc tcggccggcg cgagcaggcg
      241 ctcgccagcc tcgagaagct cagggaactg aaggccgaca agctcgccgc ggcgctccag
      301 aacttcgtgg agaagaagaa gtaaaggcgc gaaggcttag gccggccgcg cgagggccgg
      361 cggcggaaag gtaaagaggg ggcgtggcac gcgtgccacg ccccctctcg tcgtctgtgg
      421 gctcaagttt gtggcaggag gcgtggcgcc ggaaggcttc cggcgccgcg ccctcgccct
      481 tacttgaact tgaagtacgc cttgtgaacg ctgccgtcgt tcagcttcag gttgaactgg
      541 cggcaagccc ctacccacga gctttccgtc ttccatacgt acttgtactg gtcggaaagc
      601 gcgtcgtaag tgagcccgct gctgccggcc gtaagcgtgt aaacctcgct cacgtcgtta
      661 atcgcggggt tgcccgggca ggcgattgcg gcggaagtcg gggagtctgc cgcaaggatg
      721 tccgggccct tgttgccgct caggctgaac ttcataggca cggactggcc ggccttcacc
      781 aggttgaaca ccgagccgtt ctccacgggc gagaagaagc cggtgaagtt gtagagcacg
      841 gtcaccgtga aggtggccgt ggcagggttg ttgtgcacgt cggtggccgt gatagtcacc
      901 acggtcgggc cgacggagaa gaccgagccc gaggcgtggc tatagccgat gctgaccgtg
      961 ccggggcagt tgtccgtggc cgtcgccgct acggggtagg tcacgggcat gctcgtcgcc
     1021 gtcgagttaa gcggcaggta gaccgttatg tcgggcggcg gcgtgatgac gggcggcgtg
     1081 ttgtccacca ccgtcacctt ctgcgtggcc gacgccttgt tgccgcgcgc gtccgtcgcc
     1141 gtgtaggtga cggtcgtctc gccgagcggg aagaagctgc cggcggggac gccactgcgc
     1201 gcgacctgca cgccggggca gttgtcgttt gcggtcgccg tgccgagcgc cgcgtcgagg
     1261 ttggcgaccg tgaggccgca cgaggtggcg ccggcgcccg tgtaaagcgt cacgtcggcc
     1321 ggggccgcta tggtcggcgg cgtgtcgtcc accaccgtca ccttctgcac gtcggtcgcc
     1381 gtatagccgg aggcgtccgt cgccgtgtag gtgacgtagg tgtcgccgac ggggaagaag
     1441 ttccccgcgg ggacgccgct gcgcgagacg gtgacgccgg ggcagttgtc cgtggccgtc
     1501 gccgagccga gcgcggagtc gcttaccacg acgccgcacg aggcggcgcc cgcgcccgtg
     1561 ttgacgacga tgtcgtcggg cgcgttgacg gtcggcggcg tgaccgaccg ctccttgacc
     1621 accacgcgct gcgtgccggt cgtgctgttg cccgccgagt cggtcgccgt gtaggtgatg
     1681 acggtggtgc cgacggggaa gatgaaggtc ggtatctgcc tgttgaggaa ggtgcgcgtc
     1741 gggatgcccg tgcgcgtgat cctcacgcgg gtgccgcagg cgccggtggc ggtcgccaca
     1801 ccgagttcgt cgtcaacgag cgccgtgcag gagttggtga gcacctccac gtccggcggc
     1861 acgttgagca ccggcggcgc gttaccggcc gaggccttga cggttatcgt ctgcgtgcag
     1921 gacgtgacgc ggccggcggc gtcggtcgcc gtccacgtta tttccgtatc gttggccggg
     1981 aagggggagg tgagcggcag ccggtcgctg cgcacggcca cgacctccac gttgttgccg
     2041 gtcgtaacgg gcgtgcctat ctgcgcggcc gagagcgtca tctcgcagtg gccctcgggc
     2101 gcgtcgaagg tcttgtccgc ggggcaggtg atggtcgggg cgtcgttaga cgtgacgacc
     2161 acgcgctgct ggcaggtggc ggagcgggtg tcgggcggga agaggccggt ctgcgggtcg
     2221 gcggccttgt ccctcgccgt ccatgtgatg gtcgtggtgc cgacagagta cgggtcgctg
     2281 agcgagcgcg tcaggccgtc gctgcggacg ccgacgacgg aaagcacggt gccggtcgtc
     2341 gcgggcgtgc cgacctcgac ggacgcctct agctcgcccg ggtcggccgt ggccgacttg
     2401 tcgggcgggc aggtgatgcc cggcgccggc gcgtcaacga cgttgatggt gatggtgcag
     2461 ccgccgccgc cctgctcgga cgagaaggtg acgaagctct gcccggcggg gaagaagctg
     2521 ccggaggtgt ggctcgcggt cagggcgccg cagtcgccga agccctcggc cgcgccgaag
     2581 gtgacgaagg cgccgcgcac gccgttctgc tctgtgtcgg ccgtcacggt gatgtcgttc
     2641 gggcactcca gggcgcaggt ctcttccgtc acctcgccgg tgatggcggc gacggcggtc
     2701 gaagagttgt tgccctcgtg cagttcctcg gtgtcgctgt cgacatcgac ggtgtagctt
     2761 atctcggtgc cggtcggcac gcccgagttg acgttataga cgaaggagaa cacggcgatg
     2821 tcgcccggcg cgaggctggc gatggtgcag ggcatctcgc ccgacagcgc gcaggtgaag
     2881 gccgggccgg actcctggct cgactcgtcg aacgtcgagt cgttcggggc ctgccccgtc
     2941 agcgagacgt tcgtggccgc gtccggcccc ctgttggcga ccgccaccag gtacctgatg
     3001 ctgccgcccg ccgcgaagct agagacgcgc cggtctatta agttgacgac cgcgagctcg
     3061 gcagagaggt tcccggggtc tctcacggag aagaatgaag aagtcctgag cgagccgtcc
     3121 tcctccgacg cgaggtagag cccccactcc ccgcgcacgc tgaccgtgcg cgtcgcggtg
     3181 agtgaagtct ggctaatcgc gtcggtctga actatcccgc cgttggggct tatccagtag
     3241 atgcggcgcg gcccgagcag gagccccgag accttcgcgc aaaccacgtc gccggcctcg
     3301 aaagaggtct tcggcgtcgt gcagtcatcc tcataggcgg cgatgtcctc cggcccgaac
     3361 tgtactgggg ccgcgagcag cgccgagtgg cttagcgccg ccacgccggc cggcttcggt
     3421 gcggccgcgg agttaagggc agcgggtggt tgcgccgccg cgccgcgcgc ggcggctttc
     3481 gaggcagagg cgttggggcc gcggccggag gcgacggccg cgagcgcgaa ggcggctatc
     3541 gctacgaggg cgagccacct gcgggttttc ggtcgggatg acttgggtcg ttgcgcgagg
     3601 ggacgcgtct tagcggggtt gagtgggttc atatgcgctc cttgtgatcg ggccttgtgt
     3661 attgtttcgg gctggctaca agagacgtgc tcgccgtgga agatttttgg cctaggcgag
     3721 aaccaagggt tatgggaaaa gccaggaagc ttctgctcgg aaaggcagcc tatggctgtc
     3781 agaaactagc ggttttttgc ttacggaagc tcgggatacc gccgtcggta acttttgcgt
     3841 cgcctcatat accctaaaca ccgaaaataa tcaaggcccg cgcgtacaaa gcggccccct
     3901 accctacaat tcccggccgc ggggcgcccc cgcgccgctg cccggccggg ggcgggtggt
     3961 gtagaattaa gtacgtaatc gtgctcttta tttttcaggc gcaggggtga accctcttat
     4021 gacgaaggaa gcgactgagg cgaaggcggg cgtgcgggtc gagtcggact cgatgggcga
     4081 gatagaggtg gcggccgacc gctactgggg cgcgcagacc gagcgctcgc tgcaccactt
     4141 ccacataggc ggcgacgtga tgccgcgcga gatgataagg gcgctcggga tactcaagaa
     4201 ggccgccgcc ctcgtcaacg aagacctggg gaagctcccg gccgacaagg cgcgcttaat
     4261 cgagcgcgcc gccgacgagg tcatcgaagg caggctcgac gagcacttcc cgcttcgcgt
     4321 ctggcagacg ggctccggca cgcagaccaa catgaacgcc aacgaggtca tctcgaaccg
     4381 cgcaatcgag ttggccggcg gggtgatggg cagcaagaag cccgtccacc cgaacgacga
     4441 cgtgaacatg tcgcagtcgt ctaacgacac cttcccgacc gccatgcaca tcgccgcggc
     4501 cgagcagtgg aacgcgctca tcccggaggt cgagcgcctg cgcgacacgc tcgccgcgaa
     4561 ggcccaggaa tactgcgacg tggtcaagat aggccgcacg cacttgcagg acgcgacgcc
     4621 cctgacggtc gggcaggaga tgtcgggctg ggccgagatg ctcacgcgcg acatagagcg
     4681 cctgcgctca gcgctccccg gcctctacga cctcgcaatc ggcggcaccg ccgtcggcac
     4741 gggcctgaac gcgcacccgg agttcgccga gcgcgccgcg gcgaagatag cggaattgac
     4801 tggcctgccg ttccgctcgc acccgaacaa gttcgccgcg ctcgccgcgc acgacgagat
     4861 agtgttcgcc agcggcgccc taaaaacttt ggcggcgtca ctcatgaaga tagcgaacga
     4921 cgtgcgctgg ctcgcttcgg ggccgagg
//
LOCUS       DASPKR010000446        10373 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1744818, whole genome shotgun sequence.
ACCESSION   DASPKR010000446 DASPKR010000000
VERSION     DASPKR010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10373)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10373
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1744818"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..979)
                     /gene="purF"
                     /locus_tag="VD968_11925"
     CDS             complement(<1..979)
                     /gene="purF"
                     /locus_tag="VD968_11925"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR01134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HYE15143.1"
                     /translation="MSETAMDGFHDECGVFGIYGHAEAARLTYLGLYQLQHRGQESCG
                     IVAADGELRSERAMGLVSEVFVEERLDRLPGSSAIGHTRYSTAGEVSIREAQPFLIAC
                     KHGQIAVCHNGNLPSATEDRRELERDGAIFSSTSDTEVILHRIARSRSTTVEGAVAEV
                     LAETEGAFSMLFLTPQALIAVRDPRGFRPLALGRLGDAWVVASETCAFDLIEARYVRD
                     VEPGEMIVINEEGLRSSFPLPRRQHSFCVFEHVYFSRPDSRVYGRSVNESRHKMGKRL
                     AVEHPADADIVVPVPDSGVAAAIGYAARSGLAFRFGLVRNHYVGRTFIEP"
     gene            1153..1404
                     /locus_tag="VD968_11930"
     CDS             1153..1404
                     /locus_tag="VD968_11930"
                     /inference="COORDINATES: protein motif:HMM:NF012675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin domain-containing protein"
                     /protein_id="HYE15144.1"
                     /translation="MFGVKVYGADWCEDTRHALDFLDRLGVAYEYVDIERDEAAREWV
                     KGQNGGKERKPTVNVAGQILCAPTDHDLTAALRERGLMA"
     gene            1441..1944
                     /locus_tag="VD968_11935"
     CDS             1441..1944
                     /locus_tag="VD968_11935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15145.1"
                     /translation="MKRDLLAALVRAGLVLALVWAVWGVYAALPHEEEAALPAAREEQ
                     RGSTSLRIILRRPTIEPLAAARSTVRLYPINMAAARSEYDSERRPGVRFEEFATRLMG
                     GRQPLTVELDERGEAVVSVPPGRWWVHASVEGGRELTWRLPVNVTGRDKTVELTPENA
                     YARAKRF"
     gene            2041..3006
                     /locus_tag="VD968_11940"
     CDS             2041..3006
                     /locus_tag="VD968_11940"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HYE15146.1"
                     /translation="MRALRFDGEGLRVADVPAPSREGEALVRVLLSGVCNTDLEIVRG
                     YAGFRGTLGHEFVGMVERAPGREELIGRRVVGEINAGCGRCELCAGGDARHCAERTVL
                     GIVGRDGAHAEYLQLPAVNLLPVPPEVPDERAVFAEPLAAACAVTERVEVVEGERVAV
                     VGDGKLGLLCAQALRATTRAAAVVLVGRHEAKMEVARRRGVETVRADALPASFKRAFG
                     VAVEASGSPSGFAAALGLLAPRGTLVLKSTFHGATEINAAPVVVDEISIVGSRCGRFA
                     PALELLKAGAVDVEGMIHDCLPLAEGPRAFERAAAPGVLKVLLRP"
     gene            3062..4000
                     /locus_tag="VD968_11945"
     CDS             3062..4000
                     /locus_tag="VD968_11945"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYE15147.1"
                     /translation="MKLKANLGADAAILLVTLVWGSTFVVARDILDYWPPLAYLSLRL
                     TLAALMFAALFARRVLAAGREDWRAGITLGLLVGGAILGQTVGLQFTTPAKSAFISSL
                     TTPLVPLVAYLLTRARPSRENFAGVVLASAGGALILAPAGEGGVNLGDLITLATTALF
                     ATHITLMSAYARRLGTRLLGVLQILVAAAVVAAAWVLLHAYGAATGGLPEALARETAP
                     LVWSARVVWQLVYLAAVATVAVFLLWAWGQSRMSATHAAIIFSLEPVFATLFAVLLRG
                     SAEWSGGRSTVGAALVVAGVVVSELRWGRGAEGEDV"
     gene            complement(4028..4651)
                     /locus_tag="VD968_11950"
     CDS             complement(4028..4651)
                     /locus_tag="VD968_11950"
                     /inference="COORDINATES: protein motif:HMM:NF016424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HYE15148.1"
                     /translation="MSRRKRATAGAAAVLVFAALAAAGCASVPSTAGQGAGAPPPSAA
                     SLVPKGAATADTPKDAGATTSPLPAPTGHVNDFAKVLNGADREHLESRLVALKERTKV
                     EVALATVGTTGGRDIDEYSLAVARGWGIGPKAGEPGGGILLLFAVNDRRWHIQVTTSL
                     EKDLPEETVADLGGVMTPMLREGRYAEAFNKYLDALDETLSQRGRAK"
     gene            4967..6586
                     /locus_tag="VD968_11955"
     CDS             4967..6586
                     /locus_tag="VD968_11955"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HYE15149.1"
                     /translation="MLQIPKGQTTEAERAILRKLRVWIAALGAACLLVGIGLGAMLTD
                     TRTHALDDDPAGGASIAQIARAPEALSASFAEIARRVEPSVVNIDTASAAPQTAERDE
                     GDDGEEGENPLLDMLRRHSRRPARGVGSGFVVDPKGLILTNYHVVEGMTSIMVRLQSG
                     ETLRGRIIGFDEETDIAVVKVTPPRDLPAVTIGNSDDVQTGDWVLAIGSPFGLEQTVT
                     AGIISTKERQTDPRASFRRFLQTDAAINRGNSGGPLVNMRGEVIGINSQIATSTGDYN
                     GIGFALPANIASSVFKQIMSEGKVRRGYLGVFLDSVKPEFARVYGMQEAKGAIIKDMA
                     KEEGPAAKAGILTNDIIVEFNGQQVANAQDLINKVAATSVGATVPVVYLREMSNKLER
                     RTTSITVGERPPLNENETERGEGGKVETVRPNAGEAPKGDARAQSDKPALGMKVSELT
                     QQIANERNLKGVRGLYVQEVDQIGLAYDAGLRRHMVIQRVNRQPVASLEDFERVISSL
                     KPGDPIVMHVAVGTGGVEGRITQSIIQFTYQ"
     gene            6665..8245
                     /locus_tag="VD968_11960"
     CDS             6665..8245
                     /locus_tag="VD968_11960"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYE15150.1"
                     /translation="MAQAKKALNKNGKAKRGGRSAAPAPRPSAQTYLNYIGGRWVPSA
                     SGETFENTSPADTRDVVGRFPLSTTEDMERAVEAAAAAADRWRRLPAPRRAEILFRLG
                     EILIRRKDDFTRDMTREMGKVLREAGGDVQEAIDCTYYTAGEGRRLHGYTTPAEMPDK
                     FAMCVRQPVGLCGLITPWNFPMAIPSWKLIPALVCGNTVVIKPAEDTPLSTYNLIKAC
                     EEAGIPPGVVNMVTGHGETVGAALTEHPSVRLISFTGSTEVGRIVASACAERNAICSL
                     EMGGKNVIMVMEDADLDLAVEGAVWGAFGTSGQRCTASSRIVAHKRIYKKFTQKLVER
                     TRALRVGDGLDERTDVGPVINADAVHKILGYIEIGEREDGARLACGGRRLDTGAHAHG
                     YFVEPTVFTDVAPDMRIAQEEIFGPVTAVIPADSLEEAVEIGNGVRYGLSASIYTSDV
                     NRAFRAMNEMYTGIFYVNSSTIGAEVHLPFGGTKATGNGHREAGTQVLDIFTEWKSIY
                     VDYSGKLQRAQIDEVNFE"
     gene            8288..9430
                     /gene="ald"
                     /locus_tag="VD968_11965"
     CDS             8288..9430
                     /gene="ald"
                     /locus_tag="VD968_11965"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000286 - alanine dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HYE15151.1"
                     /translation="MIVGLPKEIKDNEYRVGLTPAGVRALTDAGHRVIVERSAGEGSG
                     FDDSLYEKAGASIIPSADDVWAEAEMIVKVKEPIAPEYPRMKEGLLLFTYLHLAPDPK
                     QTEALLSSKVTGVAYETITDRRGTLPLLTPMSEVAGRMAVQVGAQYLEKMNGGRGVLL
                     GGVPGVPAARVVIIGGGVVGTNAAKMAVGMGAQVTIIDRDLDRLRDLDDIFLSKVSTL
                     ASSAYAIHGAISEADLIIGAVLVAGAAAPKLVTREMLKDVPNGAVIVDVAVDQGGCIE
                     TTRPTTHSNPTFYEEGVLHYCVANMPGAVPRTSTFALTNATLPYVVKLANLGFLDAIS
                     SDPGLREGVNTYAGKLTYEAVAVAQGLDYTPLEEMLGGGAGAGKGA"
     gene            complement(9716..10144)
                     /locus_tag="VD968_11970"
     CDS             complement(9716..10144)
                     /locus_tag="VD968_11970"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE15152.1"
                     /translation="MSTTINDADLLAAVPAAAKTRPTVLLAEDDRSLRRYLEVILGRA
                     GYGVIAAADGLEAMKAALSADVDAVVTDALMPQLSGHELCRFVRRHPKLNTLPVVLLS
                     GADRNAWETDAVERADVYLSKPVRPEELTGCLTRLLGGDA"
BASE COUNT         1668 a         3414 c         3659 g         1632 t
ORIGIN      
        1 tgggctcgat gaaggtgcgg ccgacgtagt ggttacgcac cagcccgaag cggaaggcga
       61 ggccgctccg cgccgcgtag cctatcgccg cggccacgcc cgagtcgggc acggggacga
      121 cgatgtcggc gtcggccggg tgctcgaccg cgaggcgttt gcccatcttg tgccgcgact
      181 cgttgaccga gcggccgtaa acgcgcgagt cgggccgcga gaaatagacg tgctcgaaga
      241 cgcagaagga gtgctgccgc cgcggcaggg ggaaggagga gcgcaggccc tcttcgttta
      301 tgactatcat ctcgccgggc tcaacgtcgc ggacgtagcg cgcttcgatg aggtcgaagg
      361 cgcaggtctc ggaggcgacc acccatgcgt cgccgaggcg gcccagggcg agcgggcgaa
      421 agccgcgcgg gtcgcggacg gctatgagcg cctgcggcgt gaggaagagc atggagaagg
      481 cgccctcggt ctccgcgagg acttcggcga ccgccccctc gaccgtggtc gagcgcgagc
      541 gcgctatgcg gtgcagtatg acttccgtgt cggaggtgga cgagaagatg gcgccgtcgc
      601 gctcgagctc gcggcggtct tcagtggcgg aggggaggtt gccgttgtgg cacacggcta
      661 tctggccgtg cttgcaggcg atgaggaacg gctgcgcctc gcgtattgag acctcgcccg
      721 cggtcgagta gcgcgtgtga cctatggcgc tcgagccggg aaggcggtcg agcctctcct
      781 cgacgaagac ctcggagacg agccccatcg cgcgctccga gcgcagctcg ccgtcggcgg
      841 cgacgatgcc gcacgactcc tgcccgcggt gctgcaactg gtacaggccg aggtacgtga
      901 ggcgcgcggc ctccgcgtgg ccgtagatgc cgaacacgcc gcactcgtcg tggaacccgt
      961 ccatagccgt ctcgctcacg ccgttcgtct ctgtcgaggc cccgcggccg ccgtccgagt
     1021 ttgaagcggc attgtagcac ccgcgcccgg ctattgcgga atgcgtattt aaagacggcg
     1081 cgcccttcat caaacgtaaa tccgtcgtgc tatgatggcc gcattaaatc ctttcggggg
     1141 agggcggccc aagtgttcgg agttaaggtt tacggcgccg actggtgcga ggacacgcgc
     1201 cacgcgctcg acttcctgga tcgcctcggc gtcgcctacg agtacgtgga catcgagcgc
     1261 gacgaggccg cgcgcgagtg ggtcaagggg cagaacggcg ggaaggagcg caagcccacg
     1321 gtcaacgttg ccggccagat tctctgcgcc ccgacggatc acgacttgac ggccgcgctg
     1381 cgcgagcggg gcctgatggc ctgacggggc gcgctcttgg ggatggagga cgggcggagt
     1441 ttgaagagag acctgctggc cgcgctcgtg cgcgcggggc tcgtgctcgc gctggtgtgg
     1501 gccgtgtggg gcgtttacgc cgcgctgccg cacgaggagg aggccgcgct gcccgccgcc
     1561 cgcgaggagc agaggggctc gacctcgctg cgaataatcc tgcggcgccc caccatcgag
     1621 ccgctcgccg ccgcgcgcag caccgtccga ctctacccca taaacatggc ggcggcgcgc
     1681 agcgagtacg actccgagcg gcggcccggc gtccgcttcg aggagttcgc gacgcgcctg
     1741 atgggcggcc gccagccgct caccgtcgag ctcgacgagc gcggcgaggc agtcgtctca
     1801 gtcccgccgg gccgctggtg ggttcacgcc tcggtcgagg gcgggcgcga gctgacatgg
     1861 cgcctgcccg tcaacgtcac gggccgcgac aagaccgtcg agctcacgcc cgagaacgcc
     1921 tacgcccgcg cgaagagatt ctgaaaagta gtcagtagaa aaacttttcg ccggacggtc
     1981 gtcagggtga aagcctcggc gcccgccgtg ctgagcctac tgactactga ccacttcttt
     2041 atgagagccc tgcgcttcga cggtgagggt ttaagggtcg cggacgttcc cgcgccgtcg
     2101 cgggagggcg aagcgctggt gcgtgtgctg ctgtcgggcg tctgcaacac tgacctcgaa
     2161 attgtgcgcg gttacgcggg cttccggggg acgctgggcc acgagttcgt cggtatggtc
     2221 gagcgcgcgc cgggccgtga ggagttgatt ggccgtcggg tggtcgggga gataaacgcg
     2281 ggctgcgggc gttgcgagct gtgcgcgggc ggcgatgcgc gccactgcgc ggagagaacc
     2341 gtgctcggca tcgtgggccg cgacggcgcg cacgccgagt acctgcaact gccggccgtg
     2401 aacctcctgc ccgtcccccc ggaagtgccg gacgagcggg ccgtcttcgc cgagccgctc
     2461 gcggccgcgt gcgccgtgac ggagcgcgtc gaggttgttg agggcgagcg cgtcgccgtc
     2521 gtgggcgacg gaaagctcgg gctgctctgc gcgcaggctc tgagggcgac tacgcgcgcc
     2581 gcggccgtgg tgctcgtcgg ccgccacgag gcgaagatgg aagttgcgcg ccggcgcggc
     2641 gtcgagaccg tccgggcaga cgccctgccc gcatccttca agcgcgcgtt cggcgtggcg
     2701 gtcgaggctt cgggctcgcc ctctggtttc gccgccgcgc tcggtcttct cgccccgcgc
     2761 ggcacgctag tcctcaagtc aaccttccac ggcgcgaccg agattaacgc cgcgcccgtc
     2821 gtcgttgacg agataagcat cgtcggctcg cggtgcggcc gcttcgcccc ggcgctcgaa
     2881 ctcttgaagg cgggcgccgt tgacgtggag ggcatgattc acgactgcct cccgctcgca
     2941 gaaggccccc gcgccttcga gcgcgccgcc gcgcccggcg tcctcaaagt cctgcttaga
     3001 ccctgaaaga agtggcaggc gacgggcgac gagataaaac cctcccgccc gtcacctctt
     3061 tatgaagctc aaggccaacc tcggcgcgga cgcggcgata ctgctggtga cgctcgtctg
     3121 gggctcgacc ttcgtcgtcg cgcgcgacat cctcgactac tggccgccgc tcgcgtacct
     3181 ctcgctgcgc ctcacactcg cggcgctcat gttcgcggcg ctcttcgcgc ggcgcgtgct
     3241 cgcggccggg cgcgaggact ggcgcgcggg gataacgctc gggctgctcg tcggcggggc
     3301 catcctcggc cagaccgtgg gccttcagtt cactaccccc gccaagtccg ccttcatatc
     3361 gagtttgacg acgccgctgg tgccgctcgt agcgtacctt cttacgcgcg cgcggccgag
     3421 ccgagagaac ttcgcgggcg tcgtgctcgc ctccgcgggc ggcgccctca tactcgcacc
     3481 ggcgggcgag ggcggcgtga acctgggcga cttgataacg ctcgcgacca cggccctgtt
     3541 cgcaactcac ataactctga tgagcgccta cgcgcggcgg ctgggcacgc ggctgctcgg
     3601 cgtgttgcag atactcgtgg ccgcggcggt cgtcgcggcc gcctgggtgc tgcttcacgc
     3661 gtacggggcc gctaccggcg gtctgcccga ggcgctcgcg cgcgagactg cgccgctcgt
     3721 gtggtcggcc cgcgtggtct ggcagctagt ctatctcgcg gcggtggcga ccgtggcggt
     3781 cttcctcctg tgggcgtggg ggcagtcgcg aatgtcggcc acgcacgcgg cgataatatt
     3841 cagcctggag ccggtcttcg ccactctgtt cgcggtgctc ctgcgcggct cggccgagtg
     3901 gtcgggcggg cgctcgaccg tcggcgccgc gctcgtcgtc gcgggcgttg tcgtctcgga
     3961 gttgcgctgg gggaggggag cggaaggcga ggacgtttga ggggcgcgtc gcgggcgccc
     4021 ctgttgacta cttcgccctg ccgcgctggg agagggtttc gtcgagggcg tcgaggtact
     4081 tgttgaaggc ttcggcgtag cggccctcgc gcagcatggg cgtcatcacg ccgcccaggt
     4141 cggcgacggt ctcctcgggc aagtcctttt cgaggctggt ggtgacctgt atgtgccagc
     4201 ggcggtcgtt gacggcgaag agcagaagga tgccgccgcc cggctcgccc gccttcggcc
     4261 cgatgcccca gccgcgcgcg acggcgagcg agtattcgtc aatgtcgcgc ccgcccgtcg
     4321 tgcccacggt cgccagcgcg acctcgacct tcgtgcgctc tttaagggcg accagcctgc
     4381 tctctaaatg ctctctgtcc gcgccgttca ggactttcgc gaagtcgttg acgtggccgg
     4441 tcggggcggg cagcgggcta gtcgttgcgc ctgcgtcctt cggagtgtcg gccgtggctg
     4501 cgcccttcgg gacgagcgag gcggcgctgg gcggaggcgc cccggcgccc tgccccgcgg
     4561 tcgaaggcac ggaggcgcac ccggccgccg ccagcgcggc gaagacgaga actgcggcgg
     4621 ctccggcggt cgcgcgtttt cttcggctca taaggttctc cggcgggcgc tgacgattag
     4681 agggcagttg cgggggaggc cccgcggcgg cgcgtggatt atacacgcgg ggctctatta
     4741 gtcatatagt tgtaaattgg cggggcgggc gcccccgaca gtctttgcgg cgggtggcgg
     4801 cattggttat actcggggct cgccgctgtg ctcgcttaaa gtttcccctc gtcccgagac
     4861 gcacagagag attggcggca cgcgcgtcgc cgctctaaca cgcgcagacg cgccggccgc
     4921 cgagggtttc ccggccgcat tcgaagttaa gggtggtaaa agttttatgc tgcaaatccc
     4981 taaaggccag acgacggaag ccgagcgcgc catcctgcgc aagctgcgtg tgtggatagc
     5041 cgcgctcggc gcggcctgcc tgctcgtcgg aataggcttg ggcgcgatgc tgaccgacac
     5101 gcgcacccac gcgctcgacg acgaccccgc gggcggggcg agcatcgcgc agatagcgcg
     5161 cgcgcccgaa gcgctctcgg cctcgttcgc cgagatagcg cgcagggtcg agccctcggt
     5221 cgtcaacata gacacggcct cggccgcgcc gcagacggcc gagcgggacg agggcgacga
     5281 cggcgaggag ggcgagaacc ctctgctcga catgctgcgc cgccactcgc ggcggcccgc
     5341 gcgcggcgtg ggcagcggct tcgtcgttga cccgaagggg ctgatactga cgaactacca
     5401 cgtagtcgag ggcatgacga gcataatggt caggctccag tcgggcgaga ctctgcgcgg
     5461 ccgcatcatc ggcttcgacg aggagaccga catcgccgtc gtcaaggtca cgccgccgcg
     5521 cgacctgccc gccgtcacca tcggcaactc cgacgacgtg cagacgggcg actgggtgct
     5581 cgccatcggc tcgcccttcg ggcttgagca gaccgtcacg gccggcatca tctctacgaa
     5641 ggagcggcag accgacccac gcgccagctt ccggcggttc ctacagaccg acgccgccat
     5701 taaccgcggc aactccggcg gcccgctcgt caacatgcgc ggcgaggtca tcggcatcaa
     5761 ctcgcagata gcgacctcta ccggcgacta caacggcatc ggcttcgcgc tcccggccaa
     5821 catcgcctcc tccgtcttca agcagataat gtccgagggg aaggtccggc gcggctacct
     5881 cggcgtcttc ctcgacagcg tcaagccgga gttcgcgcgc gtctatggca tgcaggaggc
     5941 gaagggcgcc atcatcaagg acatggcgaa ggaggagggg ccggccgcca aagcgggcat
     6001 cctcaccaac gacatcatcg tcgagttcaa cggccagcag gtcgccaacg cacaggactt
     6061 gattaacaag gtagcggcga cgtccgtcgg cgccactgtc cccgtcgttt accttcgcga
     6121 gatgagcaac aagttggagc ggcgcacgac gagcataacg gtcggcgagc gcccgccgct
     6181 caacgagaac gagacggagc gcggcgaggg cggcaaggtc gagaccgtgc ggccgaacgc
     6241 cggggaggcg cccaagggcg acgcccgcgc gcagtccgac aagcccgcgc tcggcatgaa
     6301 ggtcagcgag ctgacgcagc agatagccaa cgagcggaac ctgaagggcg tgcgcggcct
     6361 ctacgtgcag gaggttgacc agatagggct cgcatacgac gccggcctgc gccgccacat
     6421 ggtcatacag cgcgtcaacc gccagcccgt cgcgtcgctc gaagacttcg agcgcgtcat
     6481 cagctcgctc aagcccggcg accccatcgt catgcacgtc gcagtcggca ccggcggcgt
     6541 cgaggggcgc ataacgcagt caattatcca gttcacctac cagtaagcag tcagcaataa
     6601 gcggtctgcg gtcagccgga agctggtcgc tgaccgctta ttgctgaccg ctgacagctt
     6661 tctcatggct caggcgaaaa aagctctcaa taaaaacggc aaggcgaaga ggggcgggcg
     6721 ctccgcggct cccgcccctc gcccttcggc gcagacttac ctcaactaca taggcgggcg
     6781 ctgggtgcct tccgcctccg gcgagacgtt cgagaacacg agcccggccg acacgcgcga
     6841 cgtggtcggc cgcttcccgc tctcgacgac ggaagacatg gagcgcgccg tggaggccgc
     6901 tgccgctgcg gcagaccgct ggcggagact tcccgcgccg cgccgcgccg aaatcctctt
     6961 ccgcctcggc gagattctca tacgccgcaa ggacgacttc acgcgcgaca tgacgcgcga
     7021 gatggggaag gttttgcgcg aggccggcgg cgacgtgcag gaggccatag actgcaccta
     7081 ctacacggcc ggcgaggggc gccgcctcca cggctacacg acgccggccg agatgcccga
     7141 caagttcgcc atgtgcgtgc gccagcccgt cggcctgtgc gggctaatca cgccctggaa
     7201 cttcccgatg gcgatacctt cgtggaagct catcccggcc ctggtgtgcg gtaataccgt
     7261 cgtcatcaag ccggccgaag atacgccgct ctcgacctac aacctgatta aggcttgcga
     7321 agaggcggga atcccgcccg gcgtcgtcaa catggtgacg ggccacggcg agaccgtggg
     7381 cgccgccctc accgagcacc cttccgtccg gctcatctcc ttcacgggct cgaccgaggt
     7441 cgggcgcata gtcgcctcgg cctgcgccga gcgcaacgcc atctgctcgc tcgagatggg
     7501 cggcaagaac gtgataatgg tgatggagga cgcagacctc gacctcgccg tcgagggcgc
     7561 cgtctggggc gccttcggca cctcggggca gcgctgcacg gcctcctcgc gcatcgtcgc
     7621 gcacaagaga atctacaaga agttcacgca gaagctcgtc gagcgcacgc gcgccctgcg
     7681 cgtcggcgac gggttagacg agcgcacgga cgtggggcct gtgattaacg ccgacgccgt
     7741 gcacaagatt ctgggctaca tcgaaatcgg cgagcgcgag gacggcgccc gcctcgcgtg
     7801 cggcgggcga cgcctcgaca cgggcgcgca cgcgcacggc tacttcgtcg agcccaccgt
     7861 cttcacagac gtcgcgcccg acatgcgcat agcgcaggag gagattttcg gccccgtcac
     7921 ggccgtaatc cccgccgact cgctcgaaga ggcggtggag attggcaacg gcgtgcgcta
     7981 cggcctttcg gcctccatct acacctcgga cgtcaaccgc gccttccgcg ccatgaacga
     8041 gatgtacacg ggcatcttct acgtcaactc ctcgaccatc ggcgcggaag tccaccttcc
     8101 cttcggcggc acgaaggcca ccggcaacgg ccaccgtgag gccggaacgc aggtcttgga
     8161 catcttcacc gagtggaagt ccatctacgt ggactacagc ggcaagctac agcgcgcgca
     8221 gattgacgaa gttaatttcg agtaggcgag ggctcccgga aaatcccaac gaacggagaa
     8281 gagcaacgtg atagtcggac tccccaagga gattaaggac aacgagtacc gggtggggct
     8341 gacgcccgcg ggcgtgcggg cgctgacgga cgccggccac cgcgtcatcg tcgagcgctc
     8401 ggccggagag ggctcaggct ttgacgactc gctctacgag aaggccgggg cgagcatcat
     8461 cccttcggcc gacgacgtct gggccgaggc cgagatgatc gtcaaggtca aggagccgat
     8521 agcgcccgag tacccgcgca tgaaggaggg gctgctgctc ttcacgtacc tgcacctcgc
     8581 gcccgacccg aagcagaccg aggcgctgct cagcagcaaa gtgacgggcg tcgcctacga
     8641 gacgataacg gacaggaggg ggacgctgcc gctccttact ccgatgtctg aggtggcggg
     8701 gcgcatggcc gtgcaggtcg gcgcgcagta tttggagaag atgaacggcg ggcgcggcgt
     8761 gcttctgggc ggcgtccccg gagtgccggc ggcgcgcgtg gtcatcatag gcggcggggt
     8821 ggtggggacg aacgcggcga agatggccgt aggcatgggc gcgcaggtaa cgataattga
     8881 ccgcgacctc gaccggctgc gcgacctcga cgacatcttc ctctcgaagg tctcgacgct
     8941 cgcctcttcg gcttacgcca tccacggcgc gatctcggag gccgacctaa tcatcggcgc
     9001 cgtgctcgtg gccggcgcgg ccgcgccgaa gctggttacg cgcgagatgc tcaaggacgt
     9061 gccgaacggc gccgtcatcg tggacgtggc cgttgaccag ggcggctgca tcgagacgac
     9121 gcggccgacg acgcactcga acccgacctt ctacgaggag ggggtgcttc actactgcgt
     9181 ggcgaacatg ccgggggcgg tgccgcgcac ctcgaccttc gccctgacga acgccacgct
     9241 cccttacgtc gtgaaactcg ccaacctcgg cttcctcgac gccatctcct cagaccccgg
     9301 cctgcgcgag ggcgtcaaca cctatgcggg caagctcacc tacgaggccg tggccgtcgc
     9361 gcaggggctc gattacacgc cgctcgaaga gatgctcggc ggcggcgcgg gcgcgggcaa
     9421 gggcgcctga gacgattgtg ggtcgtagat ttcggattgc ggaatgaaga gagagggttg
     9481 acgacggcgc ggccgtcgtc aaccctctcg gctttctgac acgcaattgt tcaggagtag
     9541 cggatgccgc cggcgttgag ggcgtagagt attatgagga gcacgacgac ggcgacgccg
     9601 acgccgatgg caatcttggc gccggtctag agattgttgc cgcgcgcccc gtgccaaaaa
     9661 aaggccgcgc ctccacgcgc ggccctttgt ttttacaagt cggctttccg ggcgctcagg
     9721 cgtctccgcc gagcagcctc gtcaggcagc cggtcagctc ctcgggccgg acgggcttcg
     9781 acaggtaaac gtccgcacgc tcgacggcgt cggtctccca tgcgttgcgg tcggcgccgc
     9841 tcaggaggac tacgggcagc gtgttgagtt tcgggtggcg gcggacgaag cggcaaagct
     9901 cgtggccgct caactgcggc atgagcgcgt cggtgacgac ggcgtccacg tccgccgaga
     9961 gcgcggcctt catggcttcg agcccgtctg cggcggcgat gacgccgtag cccgcgcggc
    10021 cgagtatgac ttcgaggtag cgacgcagcg agcggtcgtc ttcggcgagg agcaccgtgg
    10081 gcctcgtctt tgccgcggcg gggacggccg cgaggaggtc tgcgtcgtta atagtcgtgc
    10141 tcatgtcggg cgggctcgga agtgtcgtgc ctaattcggt tcgtggacgc acgcgcgcgt
    10201 gcgcagcggg ctgtcggcgg aagattttgg gcaagcgccg tgccgtttcg caggcggcga
    10261 ccaggaacgg cgcggggctg tttataagag cgaggcttcg ctgcggaaag gccgggtttt
    10321 aaaggcgtcg cggggctttc aaggagagcg gccgggaaaa gtgcggccac aga
//
LOCUS       DASPKR010000447         7078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_841921, whole genome shotgun sequence.
ACCESSION   DASPKR010000447 DASPKR010000000
VERSION     DASPKR010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7078)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7078
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_841921"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..787)
                     /locus_tag="VD968_11975"
     CDS             complement(<1..787)
                     /locus_tag="VD968_11975"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HYE15153.1"
                     /translation="MIGQIVGNYKIEQKLGEGGMGAVFRGVDMMLEREVAIKFLRPEL
                     ASQPQVVERFRSEAVTLAKLNHPNIATLYNFMRQGDSFFMVLEFVRGVTLDHVIQERG
                     ALAAEQAVPLFCQVLDGIQHAHDFGIIHRDIKPANMMLTEKGNLKVLDFGIARILGTA
                     RMTRQGNVIGTIEYMSPEQVRGQETDARSDIYSLGMLLYEMLTGRIPFDITNEFELMK
                     AQIEQMPVAPRQINPNIPEVVEQAIGRAIAKDPAHRFQSASEFR"
     gene            complement(784..1641)
                     /locus_tag="VD968_11980"
     CDS             complement(784..1641)
                     /locus_tag="VD968_11980"
                     /inference="COORDINATES: protein motif:HMM:NF033484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HYE15154.1"
                     /translation="MVKRTRSVAAAAASQAFEIVASVQTDKGCVREMNEDSGRFVRPS
                     DPALLRDKGTLLVVADGMGGHSAGEVASQMAVEIVSRAYYEAEYEAPAALRHAVEEAN
                     RRIHAAALADSGKHGMGTTCTALAIVGPTGVAAHVGDSRLYMLRGGEIYQLSEDHSAV
                     MEMVKHGLISKEEARTHEDKNVILRALGTTPDVEVSVLKPFQVREGDFFLLCSDGLHD
                     LVQDAEIKHTVSGAGDVHAACERLIALAKERGGHDNITVGIMGVVPAGTARAGAEPAP
                     TTREVEALR"
     gene            complement(1690..2994)
                     /locus_tag="VD968_11985"
     CDS             complement(1690..2994)
                     /locus_tag="VD968_11985"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HYE15155.1"
                     /translation="MSRAFYPNQYVGEYRILDFLGAGGMGEVYRAEHAKIGRVAAVKV
                     LTQATQSSGFVERFFNEARIQASLQHPNIATLYDFREEAARPIIIMEYVDGVTIADRV
                     QALRGPLPLAETAYVFEKVVEAVEYIHRHGVIHRDIKSNNIKISARGEVKLLDFGIAK
                     GQTSPGLTQVGSVIGTLHYLAPELIRGGVADQRGDIWALGVLLYEMVTGRVPFHADTI
                     GDLCDQIKRVAYAPPAQLNPGLPREAANIIARCLRERPADRYRDAAELLRDARALSAA
                     ASAARSTDEVARAVSQFEPAAGTGGTGKTALVLGGAAALVLLLVLGGAGLFLLIPSSS
                     PSEPDVNAHGLVNPGGGKDNASPGGADVGRGAEHAIELHSSVGQADVYRDGRKVGKTP
                     FPMTTRVGDRVRLTLKLEGYADENVDFTVSGSKKIYTFTMKK"
     gene            complement(3083..4777)
                     /locus_tag="VD968_11990"
     CDS             complement(3083..4777)
                     /locus_tag="VD968_11990"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HYE15156.1"
                     /translation="MERIVLKHLSGSKANQVEEFPLNHVKELVLGRDPSSTVKYDPDR
                     DDLVGRQHARITQDPSDPTQFIVTDLNSRNGTFVNRQKLSGTSRLNFGDVVQLGPGGP
                     EFVFEYEPRPATVAKTTRVASTGPMAPTVSGAPATRVPDAGPSQPPFVPPTAAPSSAP
                     GGVGKATVERIVAQNVAQAKKSQGRTFLVVGSIAAVLLILVVGGIGGLLYWRARTASS
                     TEVSGLKQTLDAATAGKGMSPTEIASQAGNAVVKIDVAWRLVSPEGDGNVYHQLYKDQ
                     KSGREIALYFEFPDGTVEPALTYSYNPNSYAIGGRHSGSGFSVSNDGFILTNRHVAAA
                     WETTFTFPDRAYPGIVINRSTGQIRLMDQGQLARINWVPARTKQTNIKFEGRNDSLYV
                     TFPKQDSRIIAKLNRVSPRHDVALIKIDMPGTVPKVDINDNYDSIKQGDDVVVLGYPG
                     VSPPITGIVKSQDIFNRETQNVEIPDPTFSKGNIGRVLRGEEKSGGVGDKDKFSHIGD
                     AYQLTINSTGAGNSGGPVVDEQGKVIGIFYAGTRGMDATITFAVPIRYGRELMGVN"
     gene            complement(5381..6268)
                     /gene="panC"
                     /locus_tag="VD968_11995"
     CDS             complement(5381..6268)
                     /gene="panC"
                     /locus_tag="VD968_11995"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HYE15157.1"
                     /translation="MEIINRRQRMASVARRLRREEDKTIGLVPTMGALHDGHLSLVRE
                     ARRMCDVVVVSVFVNPAQFGPGEDFNRYPRDLTGDTTKLADYNVDYIFAPPAEEIYPK
                     GFSTYVTVEGLSEPMEGVARPGHFRGVATVLTVLFNTVRPDFAFFGQKDAQQSLVVRR
                     LVRDLAFDIEVVVLPTVREQSGLALSSRNTYLSEEDHKAAAVLYKALSQAREVYMEGE
                     RNPKRLAEAARAQVATEPRASLEYVSVVDAETMEKFDRIPEDRSVLIALAARVGGTRL
                     IDNIVIQPARQKARTTSES"
     gene            complement(6353..>7078)
                     /gene="panB"
                     /locus_tag="VD968_12000"
     CDS             complement(6353..>7078)
                     /gene="panB"
                     /locus_tag="VD968_12000"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: protein motif:HMM:NF001452.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HYE15158.1"
                     /translation="NVVLGYDSTVPVTLEEMLHHTRAVRRGVERALLVADMPYGSYHT
                     GADDAVRAALRLVKEGGAEAVKLEGGRNRAEVIRRLIAEEIPVMGHVGLTPQSLNKLG
                     SYRLQARTADAARSLVEDARALEDAGAFAVVLEVVPREIARLVTETLRVPTIGIGAGP
                     DCDAQILVTHDLLGLSFSRTSPRFVRQYADLREAISEALARYSEDVRAGAFPSEAESY
                     PLPADAAAELGVARGADKQPEKT"
BASE COUNT          965 a         2319 c         2539 g         1255 t
ORIGIN      
        1 cgcggaactc cgacgcgctc tggaagcggt gcgccgggtc tttggcgatg gcgcggccga
       61 tggcctgctc gacgacctcg gggatgttgg ggttaatctg ccggggcgcg acgggcatct
      121 gctcgatctg cgccttcatc agctcgaact cgttcgtgat gtcgaagggg atgcggcccg
      181 tcagcatctc gtagaggagc atgcccagcg agtagatgtc ggagcgcgcg tccgtctcct
      241 gcccgcgcac ctgctcgggc gacatgtact cgattgtgcc gatgacgttg ccctggcggg
      301 tcatgcgggc ggtgccgagt atgcgcgcga tgccgaagtc gagcaccttg aggttgccct
      361 tctcggtcag catcatgttg gcgggcttga tgtcgcggtg gatgatgccg aagtcgtgcg
      421 cgtgctgtat gccgtcaagc acctggcaga agagcggcac ggcctgctcg gccgcgagcg
      481 cgccgcgctc ctgtatgacg tggtcgagcg tgacgccgcg gacgaactcc aagaccatga
      541 agaagctgtc gccctgccgc atgaagttgt agagcgttgc gatgttcggg tggttgagct
      601 tggcgagcgt gacggcctca ctccggaagc gctcgacgac ctgcggctgg ctcgcaagct
      661 cgggccgcag gaacttaatg gcgacctcgc gctcgagcat catgtccacg ccgcggaaga
      721 cggcgcccat gccgccctcg cccagcttct gttcgatctt atagttgcct acgatttgtc
      781 cgatcatctt agtgcctcca cctcgcgcgt cgtcggggcc ggctcggccc ccgcgcgggc
      841 agtccccgcc gggacgacgc ccattatacc cacggtgatg ttgtcgtggc cgccgcgctc
      901 cttggcgagc gcgatcagcc gctcgcaggc ggcgtgaacg tcgcccgcgc cggagaccgt
      961 gtgcttaatc tccgcgtcct gcacgaggtc gtgcagcccg tccgagcaga gcaggaagaa
     1021 gtcgccctcg cgcacctgga agggcttcaa gaccgatacc tcgacatcgg gcgtggtgcc
     1081 gagcgcgcgc aggatgacgt tcttgtcctc gtgcgtgcgc gcctcctcct tcgagatgag
     1141 cccgtgcttg accatctcca tcacggccga gtggtcttcc gagagctggt aaatctcccc
     1201 gccgcgcagc atgtagagcc ggctgtcgcc gacgtgcgcg gccacgcccg tcgggccgac
     1261 gatggcgagc gccgtgcatg tcgtgcccat gccgtgcttg cccgaatcgg cgagcgcggc
     1321 ggcgtgaatc ctgcggttgg cctcctcgac ggcgtggcgc agggcggccg gcgcctcgta
     1381 ctccgcctcg tagtaggcgc ggctgactat ctcgacggcc atctggctgg cgacctcgcc
     1441 cgcggagtgg ccgcccatgc cgtcggcgac gacgagcagc gtccccttgt cccggagcag
     1501 cgccgggtcg ctcgggcgca cgaacctgcc cgagtcctcg ttcatctcgc gcacgcagcc
     1561 cttgtcggtc tgcacgctgg cgactatctc gaaggcctgt gacgcggcgg ccgcggcgac
     1621 cgacctcgtt cgctttacca ttctaactcc cctcttgtgc ttcgggctct cccgcgcgcc
     1681 ccggcgcgac tacttcttca tggtgaaggt gtaaatcttc ttgctgccgc tgacggtgaa
     1741 gtcaacgttc tcgtcggcgt acccctcgag cttgagcgtc aggcgcacgc ggtcgccgac
     1801 cctggtcgtc atggggaagg gcgtcttgcc gaccttccgg ccgtcgcggt acacgtcggc
     1861 ctgcccgacc gaggagtgta gttctatggc gtgctcggcg ccccggccca cgtccgcgcc
     1921 gcccggcgag gcgttgtcct tcccgccgcc ggggttgacg agcccgtgcg cgttcacgtc
     1981 cggctccgag ggcgacgaag aagggatgag caggaagagg cccgcgcccc ccaggacgag
     2041 caggagcacg agcgcggccg cgccgccgag gacgagcgcg gtcttgcccg tcccgccggt
     2101 gccggccgcg ggctcgaact gcgagacggc gcgggccacc tcgtcggtgg agcgggcggc
     2161 ggacgccgcg gccgaaagcg cgcgggcgtc ccgcagcagc tcggctgcgt ccctgtacct
     2221 gtccgcgggc cgctcgcgca ggcagcgcgc gatgatgttc gcggcctccc gcggcaggcc
     2281 ggggtttagc tgcgcgggcg gcgcgtaggc gacacgcttt atctggtcgc agaggtctcc
     2341 gatggtgtcg gcgtggaagg gcacgcggcc cgtgaccatc tcgtagagca ggacgccgag
     2401 cgcccagatg tcgccgcgct ggtcggcgac gccgccgcgt atgagctcgg gcgcgaggta
     2461 gtggagcgtg cctatgacgc tcccgacctg cgtcagcccg gggctcgtct gccccttcgc
     2521 gatgccgaag tcgaggagct tgacctcgcc gcgcgcgctt atctttatgt tgttcgactt
     2581 gatgtcgcgg tggatcacgc cgtggcggtg tatgtactcg accgcctcga cgaccttctc
     2641 gaagacgtag gcggtctcgg cgagcgggag cgggccgcgc agcgcctgca cgcggtcggc
     2701 gatggtgacg ccgtccacgt actccatgat gatgatgggg cgggcggcct cctcgcggaa
     2761 gtcgtacagg gtggcgatgt tcgggtgctg taggctggcc tgtatgcgcg cctcgttgaa
     2821 gaagcgctcg acgaagccgc tcgactgcgt ggcctgcgtc agaaccttga cggccgcgac
     2881 gcgccctatc ttggcgtgct cggcccgata gacctcgccc atgccgcccg ccccgaggaa
     2941 gtcgagtatg cggtactcgc cgacgtactg gtttgggtag aaggctctgc tcacggcccc
     3001 taaggtgttg cggcgcggcg ggcgggccgg aaggctcgcg gcccgcccgc cgcgctaagg
     3061 ttaaggcgct tccttcgcgc ctctagttca cgcccatcag ctcgcggccg tagcgtatgg
     3121 gcacggcgaa ggtgatggtg gcgtccatgc cgcgcgtgcc ggcgtagaag atgccgatga
     3181 ccttgccctg ctcgtccacg acggggccgc cggagttgcc ggcgccagtg gagttgatgg
     3241 tcagctggta ggcgtcgccg atgtggctga acttgtcctt gtcgcccacg ccgcccgact
     3301 tctcctcgcc gcgaaggacg cgcccgatgt tgcccttgct gaaggtcggg tcggggattt
     3361 ctacgttctg cgtctcgcgg ttgaagatgt cctgcgactt gacgatgccg gttatcggcg
     3421 gcgagacgcc ggggtagccg agcacgacca catcgtcgcc ctgcttgatg gagtcgtagt
     3481 tgtcgttgat gtcaactttc ggcaccgtgc ccggcatgtc tatcttaatc agcgccacgt
     3541 cgtggcgcgg cgagacgcgg ttgagcttgg cgatgatgcg gctgtcctgt ttggggaacg
     3601 tgacgtagag cgagtcgttg cgcccctcga acttgatgtt cgtctgcttg gtgcgggccg
     3661 gcacccagtt gatccgggcg agctggccct gatccatgag ccttatctgc ccggtcgagc
     3721 ggttgatgac gatgccgggg taggcgcggt cggggaaggt gaaggtcgtc tcccacgcgg
     3781 cggcgacgtg gcggttcgtc aggatgaagc cgtcgttcga gaccgagaag ccgctgcccg
     3841 agtggcgccc gccgatggcg tagctgttcg ggttgtagga gtaggtgagc gcgggctcga
     3901 ccgtcccgtc cgggaactcg aagtagagcg cgatctcgcg gccgctcttc tggtctttgt
     3961 agagctggtg atagacgttg ccgtcgccct cgggcgagac caggcgccag gccacgtcaa
     4021 tcttgacgac ggcgttgccg gcctgcgagg cgatctcggt cgggctcatg cccttgccgg
     4081 ccgtggcggc gtcgagcgtc tgcttgaggc cgctcacctc ggtcgagctg gccgtgcggg
     4141 cccgccagta gaggaggccg cctatgccgc cgacgacgag tatgagcagc acggccgcga
     4201 tggagccgac gacgaggaac gtcctgccct ggctcttctt cgcctgcgcg acgttctgcg
     4261 cgacaatgcg ctcgaccgtg gccttgccca cgccgccagg ggcagaggag ggggcggccg
     4321 tcggcgggac gaagggcggc tgcgacggcc ctgcgtcggg gacgcgcgtg gccggggcgc
     4381 ccgagacggt cggggccatc gggccggtgg aggcgacgcg cgtcgtcttg gcgacggtcg
     4441 cgggccgggg ctcgtactcg aagacgaact cggggccgcc ggggccgagc tgcaccacgt
     4501 cgccgaagtt caggcgcgat gtgccggaga gtttctgccg gttgacgaac gtgccgttgc
     4561 ggctgttcag gtcggtgacg atgaactgcg tggggtcgga cgggtcttgc gtgatgcgcg
     4621 cgtgctggcg gcccacgagg tcgtcgcggt cggggtcgta cttgactgtg gacgaggggt
     4681 cgcggccgag cacgagctcc ttgacgtggt tgagcgggaa ctcttcgacc tggttggcct
     4741 tcgagccgct caggtgcttg agcactatgc gttccatagg gtgtctcctc cggttttact
     4801 ccgcgggcct aaaccgcctt cggccgcgcc gtgcgcgccg cttgtggcgc tcccggccac
     4861 gcgcgcgccg gtgccggggg cgctgcgtgt ggggacggct cgggcggtct tacgggtgtc
     4921 aattcgagag cgggctggac gggcctcggg cgcccgcgcc gcgctgtggg ccgccggggc
     4981 gttgaccccg cggcctccga ggcgcttgcg cccgtcgctt tcgatctgtt tcaaggtttt
     5041 accgcgggcg ggtaagtggc ttgaaaaagc agcttggctc tacacttcgc tctcaaacag
     5101 cgagggctcc ggggcgccgc gttctgtagg ccccgtcctt ctgctggcgt cgcgcgcgaa
     5161 attatacaac aaaccccaac gaccgcaagc gccggccgtc cggcggcgga agaaactccg
     5221 cacgggccgg ggctgcgcga agaaggcatc ggcgggcgcg cgccgcgccg ctcactccag
     5281 tttgaagacg tactcgaatc tgcgaaccac gtcggccttc cggccctcat gctcggcggg
     5341 cgtgaacttg atcttgcgcg cggcctcaag gccgtgcctc ctacgactct gaggtggtgc
     5401 gagccttctg gcgcgcgggc tgtatgacta tgttgtctat gaggcgcgtg ccgccgacgc
     5461 gcgcggccag ggcgatgagc acggaacggt cttcgggtat gcggtcgaac ttctccatcg
     5521 tctcggcgtc aacgaccgag acgtactcga ggctcgcgcg cggctcggtc gcgacctgcg
     5581 cgcgcgccgc ctcggccagc cgcttcgggt ttcgctcgcc ctccatatag acctcgcgcg
     5641 cctgcgagag cgccttgtag agcacggccg ccgccttgtg gtcttcctcc gagaggtagg
     5701 tgttgcgcga agagagcgcc agccccgact gctcgcgcac cgtcggtagc acgacgacct
     5761 cgatgtcgaa ggcgaggtcg cgcacgaggc ggcgcacgac gagcgactgc tgcgcgtcct
     5821 tctggccgaa gaatgcgaag tcgggccgga ctgtgttgaa gaggacggtg agcaccgtgg
     5881 cgacgccgcg gaagtggccg gggcgcgcga cgccctccat cggctccgag agcccctcga
     5941 cggtgacgta ggtcgagaag cccttcgggt aaatctcctc ggcgggcggc gcgaagatgt
     6001 agtcaacgtt gtagtcggcg agcttcgtgg tgtcgcccgt caggtcgcgg gggtagcggt
     6061 tgaagtcctc gccggggccg aactgcgcgg ggttgacgaa gacggagacc accaccacgt
     6121 cgcacatcct gcgcgcctcg cgcacgagcg agaggtggcc gtcgtgtagc gcgcccatcg
     6181 tcggcaccag cccgatggtc ttgtcctcct cgcgcctgag cctgcgtgcg acggacgcca
     6241 tcctctggcg gcggttgatt atttccataa gcgttcaaga agccgccagc cgcccgccgc
     6301 cggctaaagt agcgctggcg gctgacgact ggcgcccgac gactccaatc tgttacgtct
     6361 tctccggctg cttgtcggcg ccgcgcgcga cgcccagctc ggcggccgcg tccgcgggga
     6421 gcgggtacga ctcggcctcc gaagggaacg cgcccgcgcg cacgtcctcc gagtagcgcg
     6481 cgagcgcctc gcttatcgcc tcccgcagat ccgcgtactg gcggacgaag cgcgggctgg
     6541 tgcggctgaa cgagaggccg agcaggtcgt gcgtgacgag gatctgcgcg tcgcagtccg
     6601 gcccggcgcc gatgcctatg gtcgggacgc gcagcgtctc cgtgacgagg cgcgctatct
     6661 ccctcggcac gacttccagg acgacggcga aggcgccggc atcttccaga gcgcgcgcgt
     6721 cctcgacgag cgagcgtgcg gcgtcggccg tccgcgcctg caggcggtag ctgccgagct
     6781 tgttcaggga ctggggcgtc aggccgacgt gccccatcac gggaatctct tcggcgatga
     6841 ggcggcgtat gacctcggcg cggttgcgcc cgccttcgag cttgacggcc tcggcgccgc
     6901 cctccttgac gagcctgagc gcggcgcgca cggcgtcgtc ggcgcccgtg tggtaagagc
     6961 cgtagggcat gtcggcgacg agaagcgcgc gctcgactcc gcgccggacg gcgcgcgtgt
     7021 ggtggagcat ctcttcgagc gttacgggga cggtcgaatc gtacccgagc acgacgtt
//
LOCUS       DASPKR010000448         2209 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_971689, whole genome shotgun sequence.
ACCESSION   DASPKR010000448 DASPKR010000000
VERSION     DASPKR010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2209)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2209
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_971689"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..662)
                     /locus_tag="VD968_12005"
     CDS             complement(<1..662)
                     /locus_tag="VD968_12005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15159.1"
                     /translation="MKRTSLPRLIAVAALAASFVTPALSVRAQHSTQSYLRNTPSEIE
                     REDPRVQQIVARAEDHFKRGELNLRDNKREAARQEFDKAVDAVLESGMDVRSNPRLQR
                     YYLELVERVYRLEVPGQNGPATLNGATIELASVGGAPQGQQVGFVDQKFEPSPLDALS
                     KLVLNKDETNVTDDDVAKLDAEIKNTLDFKFRPHPLVQGFINYYQGRGRATMETGLRR
                     SG"
     gene            complement(1017..>2209)
                     /locus_tag="VD968_12010"
     CDS             complement(1017..>2209)
                     /locus_tag="VD968_12010"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF017200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S16 family serine protease"
                     /protein_id="HYE15160.1"
                     /translation="AMPGRIIQALQQAGTNNPLIMLDEIDKVGADFRGDPSSALLEVL
                     DPEQNNSFRDNYLGVTFDLSNVMFMTTANVLDTVQPALRDRMEVIRLAGYTEEEKLEI
                     ARRHLIPKQVEENGISARNVQISKRALSVVIQQYTQEAGLRQLEREIGTVCRKVARRI
                     AEGKTEVVRVTHKNVHDFLGAPKVFPEEILKKDQVGVATGLAWTAVGGDVLFIEALKM
                     KGKGALVLTGQLGEVMRESAQAAYSYAKSRAKELEIPEEDFEKFDLHIHIPEGAIPKD
                     GPSAGITLATAMVSALSLRPVRKDVAMTGEITLRGNVLPVGGVKEKVLAARRARVTKV
                     ILPQLNRRDMEEVPKELFGELQFVFVEHVRDVLREALKEKPAQPPAPVQRQPRLPQAA
                     APRV"
BASE COUNT          343 a          697 c          745 g          424 t
ORIGIN      
        1 tggcccgagc ggcgcaggcc cgtctccatc gtggcgcggc cgcggccctg atagtagttg
       61 atgaaccctt ggacgagcgg gtgcgggcgg aacttgaagt cgagtgtgtt cttgatctcg
      121 gcgtcgagct tcgcgacgtc gtcgtccgtg acgttcgtct cgtccttgtt gagaacgagc
      181 ttcgaaagcg cgtcgagcgg cgacggctcg aacttctggt caacgaagcc gacctgctgc
      241 ccctgcgggg cgccgccgac ggaggcgagc tcgatggtgg cgccgttcag ggtcgccggg
      301 ccgttctgcc ccggcacttc gaggcgatag acgcgctcga ccagctcgag gtagtagcgc
      361 tgcagtcgcg ggttcgagcg cacgtccatg ccggactcga gcacggcgtc aacggccttg
      421 tcgaactcct ggcgggcggc ctcgcgcttg ttgtcgcgaa ggttaagctc gccgcgcttg
      481 aaatggtctt cggcgcgggc gactatctgc tgcacgcgcg ggtcttcgcg ctcgatctcg
      541 ctcggggtat tgcggaggta tgactgcgtg gagtgctgcg cccggacgga cagggcgggg
      601 gtaacgaaag acgctgccaa cgcggcgacg gcgatcagac gggggaggct cgttctcttc
      661 aatcgttgat ctccttactt gcgagttaaa gcgaatccac gatggcgacc gtctggcgag
      721 gggtcgcacg agcggcatcc actaaaatta cggggcgtcg tcacccgtcg taagaatcgc
      781 cccgccgtgt gggcttcctc ttctcaggag gagggcgggg cctctcggga ccgccgggag
      841 cgtatcacac ggaaaaaccg ggtgtcaaac aatccgcccg catctctctg taaataaaag
      901 gcgaagcggg ccaagttacc agactttttc cgcttcgcgt tttggagaat ttaagatgct
      961 cgaagggcct tctgggttgt aaaagcgggg cgccggggag ggggcggcgc ccctccctaa
     1021 actctgggcg cggcggcctg cgggaggcgc ggctggcgct ggacgggggc cgggggctgc
     1081 gcaggcttct ccttgagcgc ctcgcgcaaa acgtcgcgga cgtgctctac gaagacgaac
     1141 tgtagctcgc cgaagagctc cttcgggacc tcctccatgt cgcggcggtt gagctgcggc
     1201 agtatgacct tcgtcacgcg cgcccgccgc gccgccagaa ccttctcctt gacgccgccc
     1261 accggcagga cgttcccgcg cagggtgatc tcgcccgtca tcgccacgtc cttccggacg
     1321 gggcgcagcg agagcgccga gaccatcgcc gtcgcgagcg ttatcccggc cgaagggccg
     1381 tccttcggta tggcgccctc gggtatgtgt atgtgcaggt cgaacttctc aaagtcctcc
     1441 tcggggattt cgagctcttt ggcgcgcgac ttcgcgtagg agtaggctgc ctgcgccgac
     1501 tcgcgcatga cttcgcccaa ctggcccgtc aagaccagcg cccccttgcc cttcatcttc
     1561 agggcctcga tgaagagcac gtcgccgccg acggccgtcc acgccagccc cgtggcgacg
     1621 cccacttgat ccttcttgag aatctcctcg gggaagacct tcggcgcgcc gaggaagtcg
     1681 tgcacgttct tgtgcgtgac gcgcacgacc tcggtcttgc cctcggcgat gcggcgcgcg
     1741 accttgcggc agaccgtccc tatctcgcgc tcgagctgcc gcaggcccgc ctcctgcgtg
     1801 tactgctgga tgacgacgga caaagcgcgc ttcgagattt ggacgttgcg cgcggagatg
     1861 ccgttctcct cgacctgctt cgggatgagg tggcggcgcg ctatctcaag cttctcctcc
     1921 tcggtgtaac cggcgaggcg aatgacctcc atgcggtcgc gaagcgccgg ctggactgtg
     1981 tcgaggacgt tcgccgtcgt catgaacatc acgttcgaca aatcgaaggt gacgccgagg
     2041 tagttgtcgc ggaaagagtt gttctgctcc gggtccaaga cttcgagcag ggccgagctg
     2101 gggtcgccgc ggaagtccgc gccgaccttg tctatctcgt cgagcattat gagcgggttg
     2161 ttcgtccccg cctgctgcag ggcctggatg atgcggccgg gcatggcgc
//
LOCUS       DASPKR010000449         7398 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1617757, whole genome shotgun sequence.
ACCESSION   DASPKR010000449 DASPKR010000000
VERSION     DASPKR010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7398)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7398
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1617757"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..582
                     /locus_tag="VD968_12015"
     CDS             <1..582
                     /locus_tag="VD968_12015"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYE15161.1"
                     /translation="AAVSGRFDCFIFDVSMPGMSGIELLKRVRDRGVETPAMFLTAHD
                     AVDDKVAGFQAGADDYLAKPFSPRELEVRVEALLRRAGRWSKPEDEKKDRFEIGDLVI
                     DKRRHEVTVAGGRVDLTPLEFHILERLASEPGRAWSRNDLLDEVWSTEYEGYQRNVDP
                     HINRLRRKIEADPKNPRYVLTVRGVGYKLNEAP"
     gene            579..2168
                     /locus_tag="VD968_12020"
     CDS             579..2168
                     /locus_tag="VD968_12020"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE15162.1"
                     /translation="MTYKVKHGASAAAAFLSLAAALAPTAAEARPPRKPQPQKPAARQ
                     EQAAAARQVTNSILIRWQGRPGVNRYRLQLATDEKFEDIVYDQAVEGRQHTVEGLPPG
                     NYYWRVAAAAAETATFSKPAPVAIGEKPGAVATTSIVLPADAGGWRTATGEVVRLAPA
                     RLRPGGVVDFVGVGADGRVFAVDGASGISLWTARFRPEERRGDPALDMPTMFAPLAVE
                     SGRDEALVVVAMEGGVRALRGDTGREVWRARLEGRAAAGAAADVSGDAARELVVVTSD
                     PARFYVLDGVTGRALAGQKLDAAAVGAPSPVAAGGTRGAALALADGSVEIRSGDGSVL
                     KSEKMPGGVTTTAPLAVMRGEMSFLVVGTERGLTALSLPDLKALGTIVAEDDRVQGTL
                     NSMDMDGDGTAEIVILTRRGRVALISTVDGNVKWYAEGVTDAASSTFADVNADGVMDV
                     IVPGGKDFALAFSGRDGTLVMKVEEGGARAPEPKAGAAPRSLVVAPSLGGGAILVGGD
                     PARVGLRAVELPKGSVKTASK"
     gene            2202..2357
                     /locus_tag="VD968_12025"
     CDS             2202..2357
                     /locus_tag="VD968_12025"
                     /inference="COORDINATES: protein motif:HMM:NF039824.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo0937 family membrane protein"
                     /protein_id="HYE15163.1"
                     /translation="MYIWLLAASLFAAWLVGKFALGKGGFIHIFLLCAIAVAVVQFVH
                     ERRAARR"
     gene            2545..4128
                     /locus_tag="VD968_12030"
     CDS             2545..4128
                     /locus_tag="VD968_12030"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HYE15164.1"
                     /translation="MKLTRSTFRLTAAALAALALTASAALAQSDLRRETVAVTYPLDQ
                     TVTLKFRGTTRLPRLKGEAKVKRSGRRNTRVELEIENLPRAYELGGVYTTYVLWAVSP
                     EGRADNLGEIKRSGSMFINTKVDVTTPLQTFALLVTAEPHFLVRSPSRLVVLENLPPR
                     DPGDAQVSTIPVQYIGNQSDYFRDPRVPDLADRDLLRTPTSLLGARQAVALARYAGAE
                     REAAGELGEAKSALEQAENAWRLGQAEAEIDTLARRSISLAVKAEESAEVATAARKRR
                     EEVARRDRAVREAEESAEEATRQIADLRERLRREEHARELAERDAMNANQQLRELRSE
                     NARLRDEIAGLRADAEQAKISLARIEGERSAEQARLNAERQAARQREALGSLKATLAR
                     FGSVREANGGIVLVLSDALWSGARVAELTAKAAATTVDPLAALLANNPDFRVVIEAYA
                     DSRGDAAELQRLTQDRAEALAGRLVSAGVDGSRIQANGLGASKPVAANTTPAGRQKNR
                     RVEITLVPSAAAAGDAASN"
     gene            4202..6247
                     /locus_tag="VD968_12035"
     CDS             4202..6247
                     /locus_tag="VD968_12035"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE15165.1"
                     /translation="MSPLEILQLVGYSTAAALHLWVGVMLLRRRRTLGKIERVLMFLA
                     VIVGVWHASNLIVALHSMLGLTVERWGLLLRVADSLAVVSVTATYSLLLHLHLHLWAD
                     ARGRGLTWTERARVYLSYVPLIFLAYAVPKLWTGAYAPMFVRLSHLLLPFALWAAYVL
                     CLVAITDFLIARLSRKRSERLLMTTLGASFLGIAGLLLAVYALGFGDARGGYLETLAN
                     LGSLLPTALLAYHIYRYRYLELIFKESLIVASFAAVVLVAYLYGIRTIAGLLTETYGV
                     RAAAVESLLILLLALVAAPFRRWLDRRFRELFEEEAALFRDVIARVGESAGRYNQLPE
                     LLRFVEERAVEGLGLRRVELLAFDIAGEGCGRPADEWETQVLERSRESGWVPVEGDAL
                     VTERGWAIAFPVRRENREVGLMLVDASPDALTYDVRAVLEMLAGQVAIAIEDCRLVEE
                     NVRLERRISQSERLAALGRMAATVAHEVKNPLSAIKSIAQVMREDDYLKREYARDLDL
                     IVGEADRLSQSVTQMLSFARSAPQQGSPRRADELLGSIVQLFKSEASARNIKLSSDFD
                     LDGAELDGATVAAVRDAVSNLLLNAFQATPAGGVVSVEAGVAGSTLALAVSDSGPGVS
                     RENRERIWEPFFTTKQRGTGLGLAIVRKRIEEVGGTARLAETRGGGARFELTLPLKN"
     gene            6299..>7398
                     /locus_tag="VD968_12040"
     CDS             6299..>7398
                     /locus_tag="VD968_12040"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE15166.1"
                     /translation="MTSAKNQTEDWRVLIVDDEEAARYGIRRALAGYGYEMQEAGSAE
                     AARAAIESKRPDLILLDVNLPGMSGTEFLRQLAEAGEHPPVIMITAYGSERMAVEAIK
                     TGAYDYLSKPFEVDELRLVVKNALETVRLRRENQTLRKRIELEGAGGGPLLGNSEAMR
                     RVRSMIEKVAETDATVLVRGESGTGKELVARELHERSTHRRAGPFVAVNCAALPSELI
                     ESELFGHEKGAFTGAAARRRGKFEQADGGTLFLDEIGDMSANVQAKLLRALEERRVER
                     LGGSDSIPVDVRIVSATHRQLEQEIERGGFRADLFYRLQVVTIEIPPLRERREDIPGL
                     AEAFAQRGAERYNLPPRTLAPSALRKLVEYDWP"
BASE COUNT         1201 a         2501 c         2586 g         1110 t
ORIGIN      
        1 gcggccgtct cgggccgctt cgactgcttc atcttcgacg tgagcatgcc gggcatgtca
       61 gggatagagc ttttaaagcg cgtgcgcgac cggggcgtcg agaccccggc catgttcctg
      121 accgcgcacg atgccgttga cgacaaggtc gccggcttcc aggccggcgc cgacgattac
      181 ctcgcaaaac ctttcagccc gcgcgagctc gaagtcaggg tcgaggcgct cctgcgccgc
      241 gcaggccggt ggtcgaagcc ggaggacgag aagaaagacc gcttcgagat aggcgacctc
      301 gtcattgaca agcgccgcca cgaggtgacg gtcgcgggcg gccgcgttga tttgacgcct
      361 ctggagttcc acattctcga acggctcgct agcgagccgg gccgggcttg gtcgcgcaac
      421 gacctgctcg atgaggtgtg gagcaccgag tacgaaggct accaacgcaa cgttgacccg
      481 cacatcaacc gcctgcggcg gaagatagag gcagacccca agaacccccg ctacgtcctg
      541 accgtccggg gcgtaggcta caaactcaac gaggccccat gacttataaa gtgaagcacg
      601 gcgccagcgc tgccgcggcc tttctctcgc tcgcggccgc gctcgccccc acggccgcgg
      661 aagcgcggcc gccacgcaag ccccagcccc agaagcccgc ggcgcggcag gagcaggccg
      721 cagcggcgcg gcaggtgacg aactcgatac tcatacgctg gcagggccgc cccggcgtca
      781 accgctaccg cctacagctc gccacggacg agaagttcga ggacatcgtt tatgatcagg
      841 ccgtcgaggg gcgccagcac actgtcgagg gccttccgcc cggaaactat tactggcgcg
      901 tcgcggccgc ggccgccgag accgcgacct tttcgaagcc cgcgccggtc gcaatcggcg
      961 agaagccggg tgcggtcgcg acgacgagca tagtgctgcc ggcagacgct ggcggctggc
     1021 gaacggcgac cggcgaggtc gtcaggctcg cgcccgcgcg gctgcggccg ggcggcgtgg
     1081 ttgacttcgt gggcgtgggc gcagacgggc gcgtgttcgc cgttgacggc gcgagcggca
     1141 tctccctgtg gactgcgcgc ttcaggcccg aggagcggag gggcgacccc gcgctcgaca
     1201 tgccgacgat gttcgccccg ctcgccgtag agagcgggcg tgacgaggcg ctcgtcgttg
     1261 ttgcgatgga gggaggtgtc cgggcgcttc gaggcgacac ggggcgcgag gtctggcgcg
     1321 ctcggctcga aggccgcgcc gcggcaggcg cggcggcaga cgtgagcggc gacgctgccc
     1381 gagagcttgt cgtcgtcacg agcgacccgg cgcgcttcta cgtcttagac ggcgtgacgg
     1441 gccgcgcgct ggcgggccag aagctcgacg cggccgcggt aggcgcgccc agccccgtcg
     1501 cggcgggcgg gacgcgcggc gcggcactcg cgctcgcgga cgggagcgtt gagattcgca
     1561 gcggcgacgg ctctgtcttg aagtccgaga agatgccggg cggggtgacg acgacggcgc
     1621 cgctcgccgt catgcgcggc gagatgtcgt tcctcgtcgt cgggaccgag cgcggcctga
     1681 cagccctgag cctccccgac ctcaaggcgc tcggcactat cgtcgccgag gacgaccgcg
     1741 tacagggcac tctcaactcg atggacatgg acggggacgg cacggccgag atagtcatac
     1801 tgacgaggcg cggccgcgtc gcgctcatca gcaccgttga cggcaacgta aagtggtacg
     1861 ccgagggcgt caccgacgcc gcctcctcga ccttcgcgga cgtgaacgcc gacggcgtga
     1921 tggacgtgat tgtgccgggc ggcaaggact tcgcgctggc cttctcgggc cgcgacggaa
     1981 cgctcgtgat gaaggtggag gagggcggcg cgcgtgcgcc cgagccgaag gccggggcgg
     2041 cgccgcgctc gctcgtcgtc gcgccctcgc tcggcggcgg ggcgatcctc gtcggcggcg
     2101 acccggcacg cgtcgggctt cgggccgtcg aattgcccaa aggctctgtc aagaccgcct
     2161 cgaagtgagg cggtcgcctt cagacgcggg ggcttcaggg cttgtacatc tggctattgg
     2221 cggcgtcgct gttcgcggcg tggctcgtcg gcaagttcgc tctcggcaag gggggcttca
     2281 tacacatctt cctcctgtgc gcgattgcgg ttgccgtcgt gcagttcgtg cacgagagac
     2341 gggccgcgcg ccgctgacgc ccgctttcgc actctccccg gcatataaac aggaaaaacg
     2401 cccggcgggg ccgaatttcg cgcggcaaca gtgcgcgcgc cgcgggcatc aatcgagacg
     2461 gcaactcttt tcagggccac gggcgcgcca acccctcctc gatgcgcgcg aacctttttg
     2521 atgacaagta aggagtcaag gcatatgaaa ctgacgcgct ccaccttccg tctgacggcg
     2581 gccgcgctgg cggccctcgc gctcacggcg tcggccgcgc tcgcacagag cgacttgcgg
     2641 cgcgagacgg tggccgtgac atacccgctc gaccagaccg tcacgctcaa gttccgcggg
     2701 acgacgcgcc taccgcgcct caagggcgag gcgaaggtga agcgctcggg gcgacgcaac
     2761 acgcgcgtcg agctcgagat cgaaaatctc ccgcgcgcat atgagctcgg cggcgtctat
     2821 acgacgtatg tcctgtgggc cgtctcgccc gagggccgcg ccgacaacct cggcgagata
     2881 aagcgaagcg gcagcatgtt catcaacacc aaagttgacg tgaccactcc gttgcagacc
     2941 ttcgcgcttc tcgtcaccgc cgagccgcac ttcctcgtcc gaagcccgag ccgcctggtt
     3001 gtgctcgaga acctgccgcc gcgcgacccc ggcgacgcgc aggtctccac catccccgtc
     3061 cagtacatcg gcaaccagag cgactacttc cgcgacccgc gcgtgcctga cctcgccgac
     3121 cgcgacctgc tgcgcacgcc cacgtctctg ctcggcgcgc gccaggcggt cgcgctcgcg
     3181 cgctacgccg gggcggaacg cgaggccgcg ggcgagctcg gcgaagccaa gtcggcgctc
     3241 gaacaggccg agaacgcatg gcgtctgggg caggccgagg ccgagattga cacgctcgcg
     3301 cgccgctcca taagcctcgc tgttaaggcc gaggagtcgg ccgaggttgc cacggcggcg
     3361 cgcaagcgtc gcgaggaggt cgcgcgccgc gacagggctg tgcgcgaggc cgaggagtcg
     3421 gccgaggagg cgacgcggca gatagcagac ctgcgcgaga ggctccggcg agaggagcac
     3481 gcgcgcgagc ttgccgagcg cgacgcgatg aacgcaaacc agcagttgcg agagctgcgc
     3541 tcggagaacg cgcggctccg cgacgagata gccggcctcc gggccgacgc cgagcaggcc
     3601 aagataagcc tcgcccgcat cgagggcgag cgctcggccg agcaggcacg gctcaacgcc
     3661 gagcggcagg ccgcgcgcca gcgcgaggcg ctcgggagct tgaaagctac gctggcccgc
     3721 ttcggctctg tgcgcgaggc gaacgggggc attgtgctcg tcctctccga cgcgctctgg
     3781 tcgggcgcgc gcgtggcaga gctgacggcc aaggccgccg ccacgaccgt tgacccgctc
     3841 gccgcgctac tcgccaataa cccggacttc cgcgtcgtaa tagaggctta cgccgacagc
     3901 cgcggcgacg ccgcagagct tcagcgcctg acgcaggaca gggccgaggc gctcgccggc
     3961 cggctcgtct cggcgggcgt tgacggctct cgcatacagg cgaacggttt gggcgcgtcg
     4021 aagcctgtcg ctgcaaacac gacgcccgcg gggaggcaaa agaaccgccg cgtcgagata
     4081 actctcgtcc cgtccgcggc cgcggcgggt gacgcggcct caaactaaat caacttccgt
     4141 tagggccaaa aggcgggaga aggggtaaaa tccttctttc gcctttcggc atttaggcag
     4201 gatgtcaccg ctcgaaatac tacagctcgt cggctacagc acggctgcgg cgctgcacct
     4261 ttgggtgggc gtgatgctct tgaggcgcag gcgcacgctc ggaaagatcg agcgcgtgct
     4321 gatgttcctc gccgtgatag tcggcgtgtg gcacgcgtcg aacctgatag tcgcgctgca
     4381 ttcgatgctg gggctgacgg tagagcgctg gggccttctg ctgcgcgtgg ccgattcgct
     4441 cgccgtcgtg agcgtcacgg caacgtactc gctgcttctc cacctacacc ttcacctctg
     4501 ggccgacgcg cgcgggcgcg gcctgacgtg gactgagcgc gcgcgcgtct atctctccta
     4561 cgttcctctg atcttcctcg cttacgctgt gccgaagctc tggacgggcg cctacgcgcc
     4621 gatgttcgtc aggctttcgc acctgctgct gcccttcgcg ctgtgggcag cctacgtgct
     4681 ctgcctcgtc gccatcaccg acttcctcat cgcgcgcctg tcgaggaaga ggagcgagcg
     4741 cctgctgatg acgacgctgg gcgcttcctt cctcggcatc gcggggctgc tgctcgccgt
     4801 ctatgcgctc ggcttcggcg acgcgcgcgg cggctacctc gaaacgctcg cgaacctcgg
     4861 ctctctgctc ccgaccgcgc tgctcgctta ccacatctac cgctaccgct acctggagct
     4921 gatcttcaag gagagcctca tcgtcgcctc gttcgccgcc gtcgtcctgg tcgcgtacct
     4981 ctacggcata cgcacgatag cggggctttt gaccgagacc tacggcgtgc gcgccgcggc
     5041 ggtggagtcg ctgctgattt tgctgctggc gttggtggcc gcgcccttcc ggcgctggct
     5101 ggaccgcagg ttccgcgagc ttttcgagga ggaggccgcg ctcttccgcg acgttatcgc
     5161 gcgcgtgggc gagtcggccg ggcgctacaa ccagctaccg gagcttctgc gcttcgtcga
     5221 ggagcgcgca gtcgagggcc tcggcctacg ccgcgtcgag ctactcgcat tcgacattgc
     5281 gggcgaaggg tgcgggcggc cggcggacga gtgggagacg caggtcttgg agcgttcgcg
     5341 cgagtcgggc tgggtcccgg tcgagggtga tgcgctcgta acggagcgag gctgggccat
     5401 cgcctttcca gtcaggcgcg agaaccgcga ggtcgggctg atgctcgttg acgcctcgcc
     5461 cgacgcgctc acatacgacg tgcgcgcagt gttggagatg ctcgctggtc aggtcgccat
     5521 cgccatagag gactgccggc tcgtggagga gaacgtcagg ctcgagcggc gcatctctca
     5581 gagcgagcgg ctcgcggcgc tcgggcgcat ggcggcgacc gtcgcgcatg aggtcaagaa
     5641 cccgctctcg gccatcaagt caatcgcgca ggtcatgcgc gaggacgact acctgaagcg
     5701 cgagtacgcg cgcgacctcg atttgattgt cggcgaggcc gaccgcctct cgcagagcgt
     5761 cacgcagatg ctaagcttcg cgcgcagcgc gccgcagcag ggctcgccgc gccgcgccga
     5821 cgagctgctc ggctcaatcg tgcagctctt caagagcgag gcgtcggcgc gcaacataaa
     5881 actctcgtcc gacttcgacc tcgacggcgc ggagcttgac ggcgcgactg tcgcggccgt
     5941 gcgcgacgcc gtctcgaacc ttctcctgaa cgcattccag gcgacgcccg ccggcggcgt
     6001 ggtctcggtc gaagccggcg tcgcgggctc gaccctcgcg ctcgccgtct cggacagcgg
     6061 ccccggcgtc tctcgcgaga accgcgagcg aatctgggag ccgttcttca ccacgaagca
     6121 gaggggtacg ggcctcggcc tcgccatcgt ccgcaagcgg atagaagagg tcggcggcac
     6181 ggcgcgacta gccgaaacgc gcgggggcgg cgcacgcttc gagctgacgc tcccgctcaa
     6241 aaattaatct ccaggcgcgg cgcgcggggc gcctgcctct cggggcttgg gaagagacat
     6301 gacttctgcg aagaatcaga ccgaagactg gcgcgtgctc atcgttgacg acgaggaggc
     6361 ggcgcgctac ggcatcaggc gggcgctggc cggctacggc tacgagatgc aggaggcagg
     6421 gagcgccgag gcggcccgcg ccgcaatcga atcaaagcgc cccgacctca tactgctcga
     6481 cgtgaaccta ccgggcatga gcggcacgga gttcctccgc cagctcgccg aggcgggcga
     6541 gcacccgccc gtcataatga tcacggccta cggctcggag cgcatggccg tcgaggcgat
     6601 aaagaccggc gcctacgact acctctccaa gcccttcgag gttgacgaac tccgcctcgt
     6661 cgtcaagaac gcactggaga cggtgcgctt gaggcgcgag aaccagactc tgcgcaagcg
     6721 catcgagctc gaaggggcgg ggggcggccc gctgctcggc aactccgagg cgatgcggcg
     6781 cgtccgctcg atgattgaga aggtagcgga gactgacgcg accgtgctcg tgcgcggcga
     6841 gtccgggacg ggcaaggagc tggttgcgcg agagctgcac gagcgaagca cgcacaggcg
     6901 cgcaggcccc ttcgtcgcgg tcaactgcgc cgcgctcccc tcggagctta tcgagtcgga
     6961 gctgttcggc cacgagaagg gcgccttcac gggcgcggcc gcgcgccggc gcggcaagtt
     7021 cgagcaggca gacggcggca ctctcttcct cgacgagata ggcgacatga gcgccaacgt
     7081 gcaggcgaag ctcctgcgcg cgctcgaaga gcgcagagtc gagcggctcg gcggaagcga
     7141 ctcaataccc gttgacgtgc gcatcgtgag cgccacgcac cggcagctag aacaggagat
     7201 agagcgcggc ggcttccgcg cagacctctt ctaccggctg caagttgtca caatcgaaat
     7261 cccgccgctg cgggagcggc gcgaggacat acccggcctc gccgaagcct tcgcgcaaag
     7321 gggggccgag cgctacaacc tcccgccgcg cacgctcgcg ccttcggcgc tgcgaaagct
     7381 ggtcgagtac gactggcc
//
LOCUS       DASPKR010000450         4423 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_972110, whole genome shotgun sequence.
ACCESSION   DASPKR010000450 DASPKR010000000
VERSION     DASPKR010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4423)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4423
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_972110"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(23..1477)
                     /locus_tag="VD968_12045"
     CDS             complement(23..1477)
                     /locus_tag="VD968_12045"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE15167.1"
                     /translation="MAARYENRMQLALALVVGLLLVANLFTLALVALTPATRAARAPV
                     LFTVFVITLVVSVPSILLLPRWLLRPYRQLVDEAERAPVEAAGRGKARDETEFVLETF
                     QEVVAQLRAKQRELERLGALASARAESAEQFGERVVANIPSGLLAFDEGGRATVVNAP
                     ARSILGLDGASAREDFRELLGASPELVQMVETCLRTGELYRREEVTAARAGGGARRLG
                     VTVAPIDPRKDGGARGALCMLTDITEVAELREAVARKHNLESLGEMSAGLAHEFKNAL
                     ATLHGYAQLFQNAGLKGEARDSAAAALLAEVRGLSEMVTAFLNFARPRPLDFGDVSLA
                     ALVEQCAADLRTLYEERRVSLVVEGEFAEVSADERMLRQAVLNLLRNAAEAVHEEAAV
                     RKVTVRGSRERDEAGGLWARVEIEDTGPGVPEEDLRRIFIPFFTTKQKGHGVGLALAH
                     RVVTDHGGTLSASNSHAGGAVFTLRLPAAEVSAH"
     gene            complement(1485..2360)
                     /locus_tag="VD968_12050"
     CDS             complement(1485..2360)
                     /locus_tag="VD968_12050"
                     /inference="COORDINATES: protein motif:HMM:NF013632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HYE15168.1"
                     /translation="MNIYETLLTLEETTGLPTWLLALCVAVVGAIIGSFLNVVIHRLP
                     REESIAFPASRCPSCGTAIRPYDNVPVLSWAVLRGRCRACRSPISARYPAVELLTAAL
                     FALTFLLRSSLTLSLPFDLAFVAALIALVFIDAEHMILPNAITYPGLAVALVARLLVP
                     NLYGVGFLCTGASCPPHWLLSLGGALAGAAVGGGFLWGVGWLWKRLRGVEAMGLGDVK
                     MMFMVGAYLGWPLTLLTIFIGVLGGSVAGVALMARRGDRDMQMLLPFGIFLGAGAVVS
                     LLFGARIVDWYAGQF"
     gene            2513..3769
                     /locus_tag="VD968_12055"
     CDS             2513..3769
                     /locus_tag="VD968_12055"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004185 - serine-type carboxypeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HYE15169.1"
                     /translation="MNPRKPIYAMMTAGLLVVLALTFTPYALITRARRAVAAFVQIPA
                     SPALEEIARQQPAPPRFDAAGWYASRGEDPARHGVLVLSGDGRRTFAELNADAAFNPA
                     SLIKLATSYAALRRLGKDYRFETRVFVEGAADKSGALKGRLVVAGGDPTFGDFHAAAL
                     GEKLSEAGVKRVPEEIAVTPDFAFNYSEKPEDSASRLANSLKLGTKKFTVTEAPQGEP
                     SFVVHSYALRDVLLYMNAHSSNFVAERLGALVGGPEGVRAVLVEDLKLAPEQVMLSTA
                     SGLESNRLTPRGLVAVIAALDAEAARQGLRLEDIMPVASDDYGTLRRRLVGTPLESAV
                     VGKTGTLVHHDGGMASLGGVIYTQRAGKIFFVMLSQGSSVALSRAMTDQLLAEIVLTN
                     DVPAQLPTPDRPRHMLGREELFVTSR"
     gene            complement(3776..>4423)
                     /locus_tag="VD968_12060"
     CDS             complement(3776..>4423)
                     /locus_tag="VD968_12060"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYE15170.1"
                     /translation="REIAAACGARVVCRPWPGFAAQKQFAAEAAASEWVFSLDADERV
                     SPELRASVEDLLYTSDDKLADGYRIARRSFYMGRWIRGGGWYPDYQLRLYRRGMGRWE
                     GAHVHESVRMREGARVETLAGDLLHYSVRDASHHHRMIGERYAPLAARQMFEAGRRTS
                     PLLIALAAPSAFARSFVLKGGFRDGLAGLAIASFAAHNAFLKHLLLWEMQNRKTD"
BASE COUNT          753 a         1499 c         1526 g          645 t
ORIGIN      
        1 tcaagagggt gcgcgtggag ctttagtgcg cggagacttc ggcggcgggg aggcggaggg
       61 tgaagacggc gccgcccgcg tgcgagttcg aggccgagag cgtgccgccg tgatccgtga
      121 cgacgcggtg cgcgagcgcc aggccgacgc cgtggccctt ctgcttcgtc gtgaagaagg
      181 gtatgaagat tcgccgcaag tcctcctctg ggacgcccgg ccccgtgtcc tcgatctcga
      241 ccctcgccca gagccctcct gcctcgtcgc gctcgcgcga gccgcgcact gtgaccttcc
      301 gcacggcggc ctcttcgtgc acggcctcgg ccgcgttgcg caggaggttg agcacggcct
      361 gcctgagcat cctctcgtcg gccgagactt cggcgaactc cccctcgacg acgagcgaga
      421 cgcgccgctc ttcgtagagc gtgcgcaaat ccgcggcaca ttgttcgacg agagcggcga
      481 gcgaaacgtc gccgaagtcg agcgggcgcg gccgcgcgaa gttgaggaaa gccgtcacca
      541 tctcggagag gccgcgaacc tcggcgagca gcgccgcggc ggccgagtcg cgcgcctcgc
      601 cctttagccc cgcgttctgg aagagctgcg cgtagccgtg cagcgtcgcc agcgcgttct
      661 tgaactcgtg cgccaggccc gcggacatct cgccgagact ttcgaggttg tgcttgcgcg
      721 cgacggcctc gcgcagctcg gcgacctccg tgatgtccgt gagcatgcag agggctccgc
      781 gcgcgccgcc gtccttgcgc gggtcaatcg gtgcgacagt cacgcccagc cgccgcgcgc
      841 ccccgcccgc gcgcgcggcc gtcacctcct cgcggcggta aagctcgccg gtgcgcaggc
      901 aggtctccac catctgcaca agctcgggcg aggcgcctag aagctctcgg aagtcttcgc
      961 gagcgctcgc gccgtcgagg ccgagtatcg agcgcgccgg agcgttgacg accgttgcgc
     1021 ggcccccctc gtcgaaggca agaaggcccg atgggatgtt tgcgacgacg cgctcgccga
     1081 actgctcggc agactcggcg cgggccgagg ctagggcgcc gagccgctcg agctcccgct
     1141 gcttcgcgcg gagctgcgcg accacctcct gaaaggtttc gaggacgaac tccgtctcgt
     1201 cgcgcgcctt gcctctccca gcagcctcga cgggcgcgcg ctctgcctcg tcaacaagct
     1261 gccggtatgg ccgtagaagc cagcgcggca gaagcaggat gctcggcacg ctcacgacga
     1321 gcgttatgac gaagactgtg aagaggacgg gcgcgcgcgc agccctcgtc gcgggcgtga
     1381 gcgcgacgag cgccagcgtg aacagattcg caacgagcag cagccccacc accagcgcga
     1441 gcgccaactg catccggttc tcgtagcgtg cggccatgcg ccttttagaa ctgacccgcg
     1501 taccagtcaa cgatgcgcgc gccgaagagc aggctcacga cggccccggc gccgaggaag
     1561 atgccgaagg gcagaagcat ctgcatgtcg cggtcgcccc ggcgcgccat gagggctacg
     1621 cccgcgacag agccgccgag cacgccgatg aagatcgtca gcagcgtcag aggccatccg
     1681 aggtacgcgc ccaccatgaa catcatcttc acgtcgccta gccccatggc ctcgaccccg
     1741 cgcaggcgct tccacagcca gcccacgccc caaaggaaac cgccgccgac ggccgcgccc
     1801 gcgagcgcgc cgcccaatga gagcagccag tgtggcgggc agctcgcgcc tgtgcagagg
     1861 aagccgacgc cgtagaggtt cgggactagc agccgggcga cgagcgcgac ggctaagccg
     1921 gggtacgtta tagcgttcgg caggatcatg tgctctgcgt ctatgaagac gagggcgatg
     1981 agcgcggcga cgaaggcaag gtcgaagggg agcgagagcg taagactgga gcgaagcagg
     2041 aacgtgagag cgaagagcgc ggccgtcaga agctctacgg ccgggtagcg cgccgagatg
     2101 ggcgagcggc aggcgcggca gcggcctcgc agaacggccc aactgagcac cggcacgttg
     2161 tcgtaagggc gtatcgccgt cccgcacgag gggcagcgcg aggcggggaa ggcgattgac
     2221 tcctctcggg gcaggcggtg tatgacgacg ttgaggaagc tgccgattat tgcgccgacc
     2281 acggcgacac agagcgcgag cagccacgtg ggcagtcccg tagtctcttc caatgtcagg
     2341 agggtctcgt aaatgttcat gctttggcgg gcggaaaaag cgccgggatg agttcggttg
     2401 gcggcgcgca cgcttgacgc gccgccccta tggcatatta aatcttttac gtcgcattgc
     2461 gaaaggttaa acgcgggccg gtacgtgcag aggggggagc agaaggctga agttgaaccc
     2521 acgtaagcca atctacgcga tgatgaccgc gggcctgctc gtcgtgcttg cgctcacctt
     2581 cacgccctac gcgctcatca cgcgcgcgcg cagggccgtc gccgcattcg tccaaatacc
     2641 ggcgagcccc gcgctcgaag agattgcgcg acagcagccg gcgcccccgc gcttcgacgc
     2701 ggccggctgg tatgcctcgc gcggcgaaga ccccgcgcgc cacggcgtgc tcgtcctgtc
     2761 cggagacggg cgccgtacct tcgccgagct taacgccgac gccgccttca accccgcctc
     2821 cctcatcaag ctcgcaacct cctacgccgc gctcaggcgg ctcggcaagg actaccgctt
     2881 cgagacgcgc gttttcgtcg aaggcgcggc cgacaagtcg ggggcgctca agggcaggct
     2941 cgtcgtcgcg ggcggagacc cgaccttcgg cgacttccac gcagccgcgc tcggcgaaaa
     3001 gctctcggag gcgggcgtca agcgcgtccc cgaagagata gccgtcacgc ccgacttcgc
     3061 cttcaactac agcgagaagc ccgaagactc cgcgtcgcgg ctcgcgaatt ccctgaagct
     3121 cggcacgaag aagttcactg tgaccgaagc gccgcagggc gagccctcct tcgtcgttca
     3181 ctcctacgcg ctgcgtgacg ttctgctcta catgaacgcg cattcgagca acttcgtggc
     3241 cgagcggttg ggcgcgctgg tgggcggccc cgaaggggtg cgggccgtgt tagtcgagga
     3301 tttgaagctc gcgcccgagc aggtcatgct ctcgacggcg tcggggctcg aatcgaaccg
     3361 cctgacgccg cggggcctcg tcgcggtcat agcagcgctc gacgccgagg cggcgcggca
     3421 ggggctccgt ctcgaagaca ttatgccggt cgcgagcgac gactacggga cgctcagaag
     3481 gcggctggtc ggcacgcctc tggagagcgc ggtggtcggg aagaccggca cgctcgtcca
     3541 ccacgacggc gggatggcga gcctcggagg ggtcatctac acgcagcgcg ccggcaaaat
     3601 cttcttcgtc atgctcagcc agggctccag cgtagccttg agccgcgcga tgacagatca
     3661 actgctcgcc gagatagtcc tcaccaacga cgtcccggcc caactcccga cgcccgaccg
     3721 cccgcgccac atgctcggcc gcgaagagct gttcgtcacc agccgttaac ttccgtcaat
     3781 cagtttttct gttctgcatt tcccagagca gcaggtgctt gaggaaggcg ttgtgcgcgg
     3841 cgaagctcgc gatggcgagg ccggcgaggc cgtcgcggaa gccgcccttg aggacgaagc
     3901 tgcgggcgaa ggccgagggg gcggcaagcg ctatcaagag cggcgaggtt cggcgcccgg
     3961 cctcgaacat ctgccgggcg gctagcgggg cgtagcgctc gccgatcatg cggtggtggt
     4021 gcgaggcgtc gcgcacgctg tagtggagga ggtctccggc cagtgtttcg acgcgcgccc
     4081 cctcgcgcat cctcacggac tcgtggacgt gcgccccctc ccagcggccc atcccgcggc
     4141 ggtagaggcg gagctgatag tcgggatacc agccgccgcc gcgaatccag cgccccatgt
     4201 agaaggagcg gcgcgcgatg cggtagccgt cggccagttt gtcgtcggaa gtgtagagca
     4261 aatcttcgac tgaggcgcga agctccggcg acacgcgctc gtccgcgtct aaactgaaga
     4321 cccactcgct ggccgccgct tcggccgcga actgcttttg cgcagcgaag ccgggccacg
     4381 ggcggcagac gacgcgcgcc ccgcacgcgg cggcgatctc gcg
//
LOCUS       DASPKR010000451         7988 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1618327, whole genome shotgun sequence.
ACCESSION   DASPKR010000451 DASPKR010000000
VERSION     DASPKR010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7988)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7988
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1618327"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2481)
                     /locus_tag="VD968_12065"
     CDS             complement(<1..2481)
                     /locus_tag="VD968_12065"
                     /inference="COORDINATES: protein motif:HMM:NF037016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HYE15171.1"
                     /translation="MKSSTPTFWRRNLRAFAAGIISYLMLAGPVAPLAAPARADSPRP
                     ANEAAAGADSAGEAPRALPAPAPLALAPSITATKTDFITDSDADGKAEPGETITYTVT
                     VTNNGPDDATNVEFSDTVDASTTLVPGSITTQPNAGADSYDVVGNVQIQPEASEGLLA
                     NDCDPSEDGSPCTNSGLTVTAMAGDSSAPFSGTSTQGGQVTAVDASGAFIYNPPPGFS
                     GTDSFTYTVTDGESKTDTATVTLNVGAIAIWFIDDNAPAGGDGRMSHPFNCYTGVSVP
                     VVGPTCFSDSAADDPGDAIFLYSGNYTGGNQLLNNQKLVGQGAGDTLANIAGVTPPAY
                     SATLPPTGGTPPVIATTLPATNAVNLATGNTLRGFTVGDTTAIDIASGASFGTLAVGE
                     VTLTGAGQALSLLNGTLSASFLSIASTSGSQGIFLSQVAGSLASPGGTSTSGSSQGIV
                     ISNSAGNFSFGNTSVSASTAGISITSSTGTKTFGTLAASASNGTAILLTSAGTVTAAA
                     GNSGNVSATNGPAIKVGDVTLNNSSAGSLQFGAVSSTNSTTNGISIASGTAGGLSITS
                     TSVSGSTETGILANNGTAALSFGNTTVNDTGNSNSDTAGAGVHLLNYLGAVSFGDLDI
                     SPDSGERALLAQTNTGALTVASGTISSTNNVAVEITGTDSSNRTPLSVVFDSVSASGA
                     AKGISVQNASDNGNGFRVTGSGSTDASGGTFSSISNRAAEFINAADVSLSNVQMTNVG
                     TANGADPTNPNSACGGISPGEGGNAGCSAGVHAASVTGLSLANIDMNGGGQEGINLNS
                     VTNFTLSNSNVLNMGDQVREDGLRALNLL"
     gene            complement(2655..3176)
                     /locus_tag="VD968_12070"
     CDS             complement(2655..3176)
                     /locus_tag="VD968_12070"
                     /inference="COORDINATES: protein motif:HMM:NF019126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HYE15172.1"
                     /translation="MSDQFLAEIRIFPFNFPPTGWAFCDGQIMPLSQNTALFALLGTT
                     YGGDGKSTFALPDMQGNAPMQPGQGQGLSLRDLGEMSGVESITLLVSEIPFHNHLVQV
                     ATDLADVQGPTPDVCLARPDGATPFVNANPNVQMAFQALPPAGGGLPHNNMQPYLTLS
                     FCIALQGIFPQRP"
     gene            complement(3187..3702)
                     /locus_tag="VD968_12075"
     CDS             complement(3187..3702)
                     /locus_tag="VD968_12075"
                     /inference="COORDINATES: protein motif:HMM:NF019126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HYE15173.1"
                     /translation="MTAYIGEIRMFAGNFAPNGWLFCEGQQLSIAENDALFTLIGTTY
                     GGDGEQTFNMPNLASRVPIHMGTGPDGTNYQIGEMAGTEQETLTVQQIPNHTHPLTVA
                     NTAAGDTNPTGTMLGQSAQAKLYIQDVPSSALPTDTVSPVGGSQPHENTQPFLCINFI
                     ISLFGIFPSQT"
     gene            complement(3713..4213)
                     /locus_tag="VD968_12080"
     CDS             complement(3713..4213)
                     /locus_tag="VD968_12080"
                     /inference="COORDINATES: protein motif:HMM:NF019126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HYE15174.1"
                     /translation="MSEPFLSEIKIVSFDFPPKGWALCNGQFLPINQNQALFALLGTT
                     YGGNGQTTFALPNLRGRVPIHVGNGHTLGEAAGSTSVTINIQQLPTHMHAFQASIATG
                     DSNVAVGNHFGVSQTPVYAPPQNLTTISPESVTPVGGSQPHNNMMPYLVLNFIIALQG
                     IFPSRN"
     gene            4578..5081
                     /locus_tag="VD968_12085"
     CDS             4578..5081
                     /locus_tag="VD968_12085"
                     /inference="COORDINATES: protein motif:HMM:TIGR01409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HYE15175.1"
                     /translation="MSVSRRDFLKSGATATLAVGLALKFGSDAASGQALRRSDPSQDF
                     PVSTEAQKDPVFSYTRETFDPYVGGIFNSRGVAGKTVGLTLLKVRDCKAAPRSARLAS
                     TPPVTKKERETDCFALIFVSSEPLTDLTTIHTLEHAALGKFGLFLTRREGEGKRLYYE
                     AVINHAR"
     gene            5217..5759
                     /locus_tag="VD968_12090"
     CDS             5217..5759
                     /locus_tag="VD968_12090"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE15176.1"
                     /translation="MTQTGGGGPIRLADGREVTLRPVSEGDDELLLAIYASTREEELA
                     QVAWGEGQKEAFLRMQFEAQSREYRARFPDAEYDVILLEGRAVGRWWVGRAEDEIRLL
                     DIALLPDAQNRGVGGALLKLLIEEARAAGVPLRHMVFVMNEGARRFYERLGFRVFEEV
                     GAYLHMEWRPEGAAAEGQAK"
     gene            complement(5747..6055)
                     /locus_tag="VD968_12095"
     CDS             complement(5747..6055)
                     /locus_tag="VD968_12095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15177.1"
                     /translation="MAGQLTEETFSRQLGTKFSVALEGGREVELVLDEVKGFKPLSHE
                     RGKVERFSVYFYGPGGVLLQQQIYKVAHAEMGEMEIFIVPVARDERGFRYEAAFNYFA
                     "
     gene            complement(6140..7372)
                     /locus_tag="VD968_12100"
     CDS             complement(6140..7372)
                     /locus_tag="VD968_12100"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE15178.1"
                     /translation="MSSEQTCLPAPARGRAGRRLSSFALSLLLVEFLDEVLFGVHESA
                     WPLIRDDLRLSYTQVGILLSVPTLFGNFVEPALGILADVWKRRAVILAGGVCYAASTL
                     LMGLSYDFVFLLLTTMVLSPASGAFVGLSQAALMDAAPDRREQNMARWTLFGAAGNAA
                     GPVAVALAVWAGVSWRWLFACVALFALVMVWAAWRLPFPTPSATEGATTREALADGFR
                     EAWAALRRREVVRWLVLLHAGDFMADVLLGFLALYFVDVVGAGGAQAATAVIVWTCVG
                     LPGDFLILWVLERVRGLSYLRVSTAAVVVIFPAFLLAEGLTAKLVLLGLLGFVNAGWY
                     PILAAQLYASMPGRSGTVMTVSNASGLVASLVPLALGAFAQRHGLGAMMWLLWLGPVA
                     LLAGLLTAPRAGAGARGA"
     gene            complement(7630..>7988)
                     /locus_tag="VD968_12105"
     CDS             complement(7630..>7988)
                     /locus_tag="VD968_12105"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HYE15179.1"
                     /translation="FWAKDIVGRTDWWDEAVDGLTENVYLTIDIDGLDPSLVAQTGTP
                     EPGGLGWYEVVGLIRTLARKRRVVGMDLNEYAYVEGQNASAFLCAKLIYKSLAYIFEG
                     ETERVRGGPQATGANA"
BASE COUNT         1269 a         2517 c         2878 g         1324 t
ORIGIN      
        1 cagcaggttc agcgcccgca gcccgtcctc cctcacctgg tcgcccatgt taaggacgtt
       61 gctgttagag agcgtgaagt tggtcaccga gttgaggttt atgccctcct ggcccccgcc
      121 gttcatgtct atgttcgcca gggagaggcc ggtgaccgag gcggcgtgca cgccggccga
      181 gcagcccgcg ttgccgccct cgccgggcga gatgccgccg caggccgagt tcgggttggt
      241 ggggtctgcg ccgttcgccg tcccgacgtt cgtcatctgg acgttggaga gcgagacgtc
      301 ggcggcgttt atgaactcgg cggcgcggtt cgagatcgag gagaaggtgc cgcccgaggc
      361 gtcggtcgag cccgagcccg tgacgcggaa gccgttgccg ttatccgagg cgttctgcac
      421 ggatatgccc ttggcggcgc ccgaggcgga caccgagtcg aagacgaccg agaggggcgt
      481 gcggttagag gagtcggtcc ccgttatctc gacggccacg ttgttggtcg aggagatggt
      541 gccgctggcg accgtcaaag cgccggtgtt cgtctgcgcg agcagcgcgc gctcgccaga
      601 gtccggcgag atgtccaggt ccccgaagct gacggcgccg agatagttaa ggaggtgcac
      661 gccggcgccg gccgtgtccg agttgctgtt gccggtgtcg ttgaccgttg tgttgccgaa
      721 gctgagggct gccgtcccgt tgttagcgag tatgccagtc tcggttgagc cggagacgct
      781 cgtgctcgtt atcgagagcc cgcccgccgt gccgctggcg atgcttatgc cgttcgtcgt
      841 gctgttggtc gaggagacgg cgccgaactg caggctgccc gccgaggagt tgttgagcgt
      901 cacgtcgccg accttgatgg cggggccgtt cgtggcgctg acgttgccgg agttgccggc
      961 cgcggccgtc accgtcccgg cgctggtcag gaggatggcc gtgccgttgg aggccgaggc
     1021 ggcgagcgtg ccgaaggtct tcgtccccgt gctgctcgtt atcgagatgc cggccgtgga
     1081 ggccgagacc gacgtgttgc cgaagctgaa gttgccggcg gagttgctga tgactatgcc
     1141 ctgcgaagag ccggacgtgg acgtgcctcc cggtgaggcg agcgagccgg cgacctggct
     1201 gaggaagatg ccctgcgagc cggaggtcga ggcgattgag aggaacgagg cgctgagcgt
     1261 gccgttgagc aggctcaggg cttggcccgc cccagtaagc gtcacctccc cgacggcgag
     1321 cgtgccgaag ctggcgcccg aggcgatgtc aatggcggtc gtgtcgccga cggtgaagcc
     1381 ccgcagcgtg ttgcccgtcg ccaggttgac ggcgttggtc gcaggcaacg tggtcgctat
     1441 caccggcggc gtgccgcccg tcgggggcag cgtggcgctg taggcgggcg gcgtgacgcc
     1501 cgcgatgttg gcgagcgtgt cgcccgcgcc ctgccctacg agcttctggt tgttgaggag
     1561 ctggttgccg cccgtgtagt tacccgagta caggaagatg gcgtcgccgg ggtcgtccgc
     1621 ggccgagtcg gagaagcagg tcggccccac gacggggacg ctcacgccgg tgtagcagtt
     1681 gaacgggtgc gacatgcgcc cgtcgccgcc cgcgggcgcg ttgtcgtcta tgaaccagat
     1741 ggctatggcg ccgacgttga gcgtcacggt cgccgtgtcg gtcttgctct cgccgtccgt
     1801 caccgtgtag gtgaacgagt ccgtgccgga gaagcccggc ggcgggttgt agatgaaggc
     1861 gccgctcgcg tcaacggcag tgacctggcc gccctgagtg ctcgtgccgg agaagggcgc
     1921 ggacgagtcg ccggccatcg ctgtcacggt cagccccgag ttagtgcagg gcgagccgtc
     1981 ctcggacggg tcgcagtcgt tggcgagcaa gccctcggag gcttccggct gtatctggac
     2041 gttcccgacc acgtcgtaac tgtcggcgcc ggcgttgggc tgcgtcgtta tcgagccggg
     2101 gacgagcgtt gtgctcgcgt caaccgtgtc gctgaactcg acgttggtgg cgtcgtcggg
     2161 gccgttgttc gtgacggtga cggtgtatgt gatcgtctcg cccggctcgg ccttgccgtc
     2221 ggcgtcggag tccgtgatga agtccgtctt ggtcgccgtg atgctcggcg cgagcgcgag
     2281 cggggcgggg gcgggcagcg ccctgggcgc ttcgccggcc gagtcggccc cggcggcggc
     2341 ctcgttagcg ggcctcggag aatcggcgcg cgcgggcgcc gccagcggcg cgacggggcc
     2401 ggccagcatg aggtaggaga tgatgcccgc ggcgaatgcc ctcaggttac ggcgccagaa
     2461 cgtcggcgtt gaagacttca taactctcct tatgatcacc acgagacggg gggagcgctc
     2521 gtgcgaggta gttcctaaac ttgaggctcg gggcagggtt actcgggcgg gcctgggggc
     2581 gggcgcccgg cgtggtcgtg cgcgggggcg gcgctccttg gtggcatgcg ccgcccccgc
     2641 cgtctttcgg gcccttacgg cctctgcggg aagatgccct ggagggctat gcagaagctc
     2701 agggtcaggt acggctgcat gttgttatgc ggcagccctc cgcccgcggg cggcagcgcc
     2761 tggaaggcca tctgcacgtt cgggttggcg ttgacgaaag gggtcgcgcc gtcgggccgc
     2821 gcgaggcaga cgtcgggcgt cggcccctgc acgtcggcaa ggtcggtggc gacctgcact
     2881 aagtggttgt ggaagggtat ctcgctcacc agcagcgtga tgctctcgac gccggacatc
     2941 tcgccgaggt cgcgtaagct gaggccctga ccctggccgg gctgcatcgg ggcgttgccc
     3001 tgcatgtcgg gtagggcgaa ggtggacttg ccgtcgccgc cgtaggtcgt acccagcagg
     3061 gcgaagagcg ccgtgttctg cgataagggc attatctgcc cgtcgcagaa ggcccagcca
     3121 gtcggcggga agttgaaggg gaagatgcgg atttcagcta ggaactggtc ggacatttca
     3181 tctcctttag gtctggctgg ggaatatccc gaagagcgag atgatgaagt tgatgcagag
     3241 gaacggctgc gtgttctcgt gcggctggct cccccccaca ggcgagacgg tgtcggtcgg
     3301 cagggccgag ctcggcacgt cctgtatgta gagcttggcc tgggccgact gcccaagcat
     3361 cgtccccgta gggttggtgt cgccggccgc cgtgttggcg acggtgagcg ggtgcgtgtg
     3421 gttgggtatc tgctggacgg tgagggtctc ctgctcggtg ccggccatct cgcctatctg
     3481 gtagttcgtc ccgtcgggcc cagtgcccat gtggatgggg acgcggctgg cgaggttggg
     3541 catgttgaag gtctgctcgc cgtctccgcc gtaggtcgtg cctatgagcg tgaagagcgc
     3601 gtcgttctcg gctatggaga gctgctggcc ctcgcagaac agccacccgt tgggggcgaa
     3661 gttgcccgcg aacatcctga tctctcctat gtatgctgtc atgcctcctc ctttagttcc
     3721 gcgacgggaa gatgccctga agggcgatga tgaagttcaa cacgaggtaa ggcatcatgt
     3781 tgttgtgcgg ctggctgccg ccgacgggcg tgaccgactc gggagatatc gtcgtgagat
     3841 tctgcggcgg cgcgtaaacc ggggtctgcg agacgccgaa gtggttgccg acagcgacgt
     3901 tgctgtcgcc ggtggcgatt gacgcctgga aggcgtgcat gtgcgtcggt agttgctgga
     3961 tgttgatcgt cacggaagtc gagccggccg cctcgccgag cgtgtgcccg ttgcctacgt
     4021 ggatggggac tcggccccgc aagttgggca gcgcgaaggt ggtctggccg ttgccgccgt
     4081 aggtcgtgcc cagaagggcg aagagcgcct ggttctggtt gatgggcagg aactggccgt
     4141 tgcacagcgc ccagcccttc ggcgggaagt cgaaggagac tatcttgatc tcggaaagga
     4201 acggttcgga catgggtcac tccttagggg tggcttctag agctttttgt caaccggttg
     4261 actgggccgc ccggcgcggg aaggacgggc gggaagcgga gaattccgtg taaagctggc
     4321 ggcctgagcg cccagagtgc tggcggttaa atcctgttcg tcggcgtgcc tgttcgctga
     4381 aggtttggaa agtagcttgt ccgtctattc gtggcggccg gcattctatc cgcacaaggc
     4441 caaaatatca agacgcatgt tcaacgcatt taacttaaag gttgtaactt ctcgggaaag
     4501 cgcatacact gtcgcccctt ggcgggcctt acaggcaggc ccgccgccca ccccttagtc
     4561 tcgaggagaa caaaagaatg tcagtatcgc gacgcgactt tttgaagtcg ggcgcgacgg
     4621 ccacgcttgc ggtcggcctc gcgctcaaat tcgggagcga cgcagcttcc gggcaggcac
     4681 ttagacgatc cgacccctcg caagacttcc ctgtctcgac cgaagcgcag aaagatcccg
     4741 tattcagcta caccagagag actttcgacc cctacgtggg cggcatcttc aactcgcgcg
     4801 gggtcgcggg caagaccgtg gggctcacgc tcctgaaggt gcgcgactgt aaggcggcac
     4861 cgcgcagcgc tcgcctcgcc tcgacgccgc cggtcacgaa gaaggagcgc gagacggact
     4921 gcttcgcgct catattcgtc tcttccgagc cgctcacaga cctgacgacc atacacaccc
     4981 tcgagcacgc ggcgctcggc aagttcggcc tgttcctgac tcgccgcgag ggcgagggca
     5041 agcggctcta ctacgaggcg gtcatcaacc acgcccgcta accgacgcgc ggggctttgc
     5101 ggccccgcgc cgaaaaccaa ctccctcgcc gcgaaaccgg gaagcccccg cccgcctgac
     5161 gagcggggcg ggggcttacg tacgcgcggc gccttcggac gaaagggatc ggacggatga
     5221 cgcagacggg gggcggcggc cccataaggc tcgcggacgg gcgcgaggtg accttgcggc
     5281 ccgtgtcgga gggcgacgac gagctcctgc tcgcgatcta cgcgagcacg cgcgaggagg
     5341 agcttgcgca ggtcgcctgg ggagaggggc agaaggaggc cttcctgcgc atgcagttcg
     5401 aggcgcagag ccgcgagtac cgcgcgcgct tccccgacgc ggagtacgac gtgatactgc
     5461 tcgaaggccg cgcggtcggg cgctggtggg tgggccgcgc ggaggacgag atacgcctgc
     5521 tcgacatagc gctcctgccc gacgcgcaga accggggcgt gggcggcgcc ctcctcaagc
     5581 tcttgatcga ggaggcgcgg gccgcgggcg tgccgctgcg ccacatggtc ttcgtgatga
     5641 acgagggcgc caggcgattc tacgagcgtc taggcttccg ggtcttcgag gaggtcgggg
     5701 cctacctgca catggagtgg aggccggagg gcgcggcggc cgagggtcag gcgaagtagt
     5761 tgaaggcggc ctcgtagcgg aagccgcgct cgtcgcgcgc cacggggacg atgaagatct
     5821 ccatctcgcc catctcggcg tgcgcgacct tgtatatctg ctgctggagt aacacgccgc
     5881 cggggccgta gaaatagacg gagaagcgct cgacctttcc cctctcgtgg ctgagcggct
     5941 tgaagccctt cacctcgtcg agcacgagct cgacctcgcg cccgccttcg agcgcgacgc
     6001 tgaacttcgt ccccaactgc cgcgagaaag tctcctccgt caactgtccg gccataagtg
     6061 agcctctcag aaagggaatg aaaagggcgc cgccgtgggc gtcggcggcg ccaagatagc
     6121 acgaacactc gccccgcaat caagccccgc gcgcccccgc gcccgcgcgc ggcgccgtga
     6181 gcagccccgc gagcagcgcc acaggcccga gccagagcag ccacatcatc gcccccagcc
     6241 cgtgcctctg cgcgaaggcg ccgagcgcga gcggcacgag gctggcgacc agccccgacg
     6301 cgttcgacac cgtcatcacc gtgccgctgc gccccggcat cgaggcgtaa agctgcgccg
     6361 cgaggatcgg gtaccagccg gcgttcacga acccgagcag cccgagcagc acgagcttcg
     6421 ccgtcagccc ctcggcgagc aggaaggccg ggaagatgac gacgacggcc gccgtgctca
     6481 cgcgcaggta gctcaagccc ctcacccgct caagcaccca gaggatgagg aagtcgccgg
     6541 gcaaccccac gcacgtccag acgatgacgg ccgtcgccgc ctgcgccccg cccgcgccga
     6601 ccacgtccac gaagtagagc gcgaggaagc cgagcagcac gtcggccatg aagtcacccg
     6661 catgcagcag cacgagccag cgcaccacct cgcgccgcct gagcgcggcc cacgcctcgc
     6721 ggaacccgtc ggcgagcgcc tcgcgcgtcg tcgcgccctc cgtcgcggac ggcgtcggga
     6781 aggggagacg ccacgcggcc cagaccatca cgagcgcgaa gagcgcgacg cacgcgaaca
     6841 gccagcgcca actgacgccc gcccacacgg cgagcgcgac tgcgaccggc ccggccgcgt
     6901 tgccggccgc gccgaacaga gtccagcgcg ccatgttctg ctcgcgcctg tccggcgcgg
     6961 cgtccatcag cgccgcctgt gacaggccga cgaacgcgcc cgaggcgggg ctgagcacca
     7021 tggtcgtgag cagcaggaag acgaagtcgt agctcagccc catcaacagc gtcgaggcgg
     7081 cgtagcagac cccgcccgcg agtatgacgg cgcgcctctt ccaaacgtcg gccagtatgc
     7141 cgagcgcggg ctcgacgaag ttgccgaaca gcgtcggcac gctcaggagg atgccgacct
     7201 gcgtgtagga gagccgcagg tcgtcgcgga tgagcggcca cgcggactcg tgcacgccga
     7261 acaagacctc gtcgaggaac tcgacgagca ggaggctcag ggcgaaggac gagaggcgtc
     7321 ggcccgcgcg cccccgtgcg ggcgcgggca gacaggtttg ttcggatgac attgacggtg
     7381 attctccttc tctcgcgtga agaggttgac gtttccgttt aagtgagcgc ggaaaacgtc
     7441 ccccgcggag gagggatcac cgagcgcgcg agggcaagcc acaaccttcg cggcacgcgc
     7501 gcacgcctct ggcgtgtgcg cgccgccgcc gtcaggcttg ccgctctagc cggggcttac
     7561 caaggaggga agtcggaatt ctgtgctttc gtcatgccac gaattttagc acgggaaggg
     7621 gctcgacgct caagcgttcg cgcccgtggc ttgcgggccg ccgcggacgc gctcggtctc
     7681 gccctcgaag atgtaggcga gcgacttgta gatgagcttg gcgcagagga aggccgaggc
     7741 gttctggccc tcgacgtagg cgtactcgtt caagtccatg ccgacgacgc ggcgcttgcg
     7801 cgccagcgtg cggatgagcc cgaccacctc gtaccagccg aggccgcccg gctccggcgt
     7861 ccccgtctgc gcgacgagcg acgggtcgag gccgtctatg tcgatggtca ggtagacgtt
     7921 ctcggtgagg ccgtccacgg cctcgtccca ccagtcggtg cgcccgacga tgtccttggc
     7981 ccagaaga
//
LOCUS       DASPKR010000452         2331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_197003, whole genome shotgun sequence.
ACCESSION   DASPKR010000452 DASPKR010000000
VERSION     DASPKR010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2331)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2331
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197003"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2331
                     /locus_tag="VD968_12110"
     CDS             <1..>2331
                     /locus_tag="VD968_12110"
                     /inference="COORDINATES: protein motif:HMM:NF016260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HYE15180.1"
                     /translation="TNFKAASGRLDARFEGATGPDESARTPLTGELALMADRGLFQIE
                     RANLRTGATELNARGRFSFEGGSDLAVNLNSADAAELQSVVIATGLLPDLEERVKEFG
                     VQLAGNLSFNGTLSGDLDDPLVNGRFELASLTMRGRDLGALSADVVSNASETRVTNGR
                     LAQPGGGGAQFAAVIPRAGENNVSFEATLENADVSSLLLALGGDAPAEGEGGGMSAQS
                     LAGLGRASGRVSVTGYPGAMAGSADLRVGSGVIGSQAYDEIVARATFSGSRVNVETVE
                     ARLAAGRVTASGNVDIEQKSFDFRAEGTGVRLDLLGGVLPAGRGAPRLGGIADFTASA
                     SGNILDPTSYRAEINARGRDVTINGQPAGELTLVGTTTADQKFNLELTTGLLGSPQVI
                     RAQVDLAGEEGIPLIVETTLAGADLTPLFSALLPGSGVRVTGTATGSLRASGNLLDEE
                     GGFTTSALSGRAEFTTLNVQIEDVALEAVSPLVVVFTPREITFEQTRFRGPGTNISFG
                     GKAAIAAGGTNDVTVEGALNLGVLSNPGQNFFLSGAANVAVSVKGAYESPRLTGTASL
                     ANASFALLVSNQRLVASEINGLVRFNETNASIESLTGRLGGGRVSATGGVLLAGFRPV
                     QFRVVARGDEVTVPFPADFRTTADAELEISGRLDSQIIKGTVNVRRSEYTENLDLADL
                     IDQRREAPITEGGGGGGGGLLAGSVTTLDLIIQGRDALVVRNNLADMVGSISLRARGT
                     VDDPLISGRITVTRGTLAFRNEQFELQRGIIDLPPRR"
BASE COUNT          373 a          834 c          799 g          325 t
ORIGIN      
        1 cacgaacttc aaggcggcat cgggccggct cgacgcgcgc tttgaaggcg caaccggccc
       61 cgacgaatcc gcccgcacgc cgctcacggg cgagctggcg cttatggccg accgcggcct
      121 cttccagata gagcgcgcca acctccgcac cggcgccacc gagcttaacg cccgaggccg
      181 tttctccttc gagggcggtt cagacctcgc cgtcaacctg aactcggctg acgccgccga
      241 gcttcagtcg gtcgtgatag cgacggggtt gcttcccgac ttggaagagc gcgtcaaaga
      301 gttcggcgtg caactcgccg gcaacctcag cttcaacggc accctttcgg gcgacctgga
      361 cgacccgctc gtcaacggcc gcttcgagct tgcttccctg acgatgcgcg ggcgcgacct
      421 cggcgccctc agcgccgacg tcgtctcgaa cgcctcggag acgcgcgtca cgaacgggcg
      481 gctcgcgcag cccggcggcg gaggcgcgca gttcgcggcc gtcatcccgc gcgccggcga
      541 gaacaacgtc tcgttcgagg cgacgctcga gaacgcggac gtgtcgagct tactgctcgc
      601 gctcggcggc gacgcgccgg ccgaaggcga gggcggcggc atgagcgcgc agagcctcgc
      661 gggcctcggg cgcgcgtcgg ggcgcgtgag cgtaaccggc taccccggcg cgatggccgg
      721 gagcgccgac cttcgcgtcg gctcgggcgt cataggctcg caggcttacg atgagatagt
      781 cgcgcgggcg actttcagtg gctctcgcgt gaacgtcgag acagtcgagg cgcggctggc
      841 cgccggccgc gtcacggcga gcggcaacgt tgacatagag cagaagagct tcgacttccg
      901 cgccgaaggc acgggcgtcc gcctagacct cctcggcggc gtgctccccg cggggcgggg
      961 cgcgccgcgc ctgggcggca tcgcagactt cacggcctcc gcctccggca acatcctcga
     1021 cccgacctcc taccgcgccg agataaacgc gcgcggccgc gacgtgacca tcaacggcca
     1081 gccggcgggc gagctaacgc tcgtgggcac gacgacggcc gaccaaaagt tcaacctgga
     1141 gcttactacg gggcttctgg gcagcccgca ggtcatacgc gcgcaggttg acctcgcggg
     1201 cgaggagggc ataccgctca tcgtcgagac gaccctcgcg ggcgcagacc tcacgccgct
     1261 cttctcggcg ctgctgcccg gcagcggcgt gcgcgtgacg gggactgcga cggggagcct
     1321 gcgggcttcg gggaacctgc tcgacgagga gggcggcttc acgacctcgg cgctcagcgg
     1381 ccgcgcagag ttcaccaccc tcaacgtgca gatagaggac gtggcgctcg aggccgtcag
     1441 cccgctcgtc gtcgtcttca cgccgaggga gataaccttc gagcagacgc gcttccgcgg
     1501 ccccggcacg aacataagct tcggcggcaa ggccgccatc gccgcgggcg gcacgaacga
     1561 cgtgacggtc gagggcgccc tgaaccttgg cgtgctaagc aacccgggcc agaacttctt
     1621 cctgtcgggc gccgccaacg tcgccgtgag cgtcaagggc gcctacgaga gcccgcgcct
     1681 tacggggacg gcttcgctcg cgaacgcctc gttcgccctg ctcgtctcga accagcgact
     1741 ggtggcgagc gagatcaacg gcctcgtccg cttcaacgag acgaacgcga gcatagagag
     1801 cttgacgggc cgcctcggcg gcggccgcgt ctcggcgacg ggcggcgtgc tgctcgccgg
     1861 cttccgcccc gtgcagttcc gcgtcgtcgc gcgcggcgac gaggtgacgg tgcctttccc
     1921 ggcggacttc cgcaccaccg ccgacgccga actggagata agcggccgcc tcgattcgca
     1981 gataatcaag gggactgtca acgtccgccg cagcgagtac actgagaacc tcgacctcgc
     2041 agaccttata gaccagcggc gcgaggcgcc catcacggag ggaggcggtg gcgggggcgg
     2101 cggcctgctc gcaggctcgg tcacgaccct cgacctcatc atacaggggc gcgacgcgct
     2161 agtggtgcgc aacaacctag ccgacatggt cggctcaata agccttcggg cgcgcggcac
     2221 cgtggacgac cccctcatat cggggcgcat cacggtcacg cgcggcacgc tcgccttccg
     2281 caacgagcag ttcgagcttc agcgcggcat cattgacctg ccgccgcgcc g
//
LOCUS       DASPKR010000453         2639 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_710765, whole genome shotgun sequence.
ACCESSION   DASPKR010000453 DASPKR010000000
VERSION     DASPKR010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_710765"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..911)
                     /locus_tag="VD968_12115"
     CDS             complement(<1..911)
                     /locus_tag="VD968_12115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15181.1"
                     /translation="MSRKNVGARLPGVRFEVQEPPLAEVLPRMDVTVFVGFAASGPVG
                     VPVAVADAAQFAAVFGDDTPLAADPERGEPARAYLASAVRSFFVNGGRRCWVVRVARD
                     ARSNRFPLPAMLARRGGGALAPAFAVARSEGSWSDALRVGASLKTRAVEVTKATPNDL
                     SFELAPSSPGDVRVGDLLRFSFRDEGFALLAVVTEAATTGGGAQSPPGSSPNRRAVVS
                     VRCGDALWCRTRWLSGSGFDPLPATASVIGGAGPPPPPAAVAEWSFSELEQSVTALLS
                     VPLSGAPREGDRIRLDFGDAELQFTART"
     gene            complement(925..1377)
                     /locus_tag="VD968_12120"
     CDS             complement(925..1377)
                     /locus_tag="VD968_12120"
                     /inference="COORDINATES: protein motif:HMM:TIGR02241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HYE15182.1"
                     /translation="MAVTRERPYSQFNFLVDLGGGGGTSGVEAGFQEVSGLGMEITVS
                     EYRNGNEPLNSVRKVNGMTKVTDVTLKRGIIGSKALYDWISQLRDGSPDALRTVVVHL
                     QSEDHNVVATWTLRNARITKHTSGPFNAKGTDVAMEEMTLAYERLDFE"
     gene            complement(1412..>2639)
                     /locus_tag="VD968_12125"
     CDS             complement(1412..>2639)
                     /locus_tag="VD968_12125"
                     /inference="COORDINATES: protein motif:HMM:NF016845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail sheath subtilisin-like
                     domain-containing protein"
                     /protein_id="HYE15183.1"
                     /translation="VVTLTITATMPDGTTQVWDNLPLDPKHETAGSPDSPFSRFAENP
                     GSLSQALRLPFVLTAGSAVSDGLDVLSALLSANSRHRAALDRDDSTDEERSVDANLSG
                     GNDGDRPTAAEYEGSDDPSSSKKTGLKQFEDLEDISIVAAPGSTHGYEANAATRSQAQ
                     TVIGLLIAHAEKMRYRIAVVDSGDRQAVSDVRAMRARYDSKYAAFYYPWVRVLDPVTQ
                     REIHLPPSGFVAGIYARNDVNRAVFKAPANEVVNLAIGFETLLNKSQQDVLNPEGINC
                     FRYFEGRGFRLWGARTMTSDPEWKYVNLRRYFAYLERSIDKGTQWAVFEPNGEALWGN
                     IRRTIEDFLLNEWVMGALLGDKPEKAFFVRCDRSTMTQNDLDNGRLVCLIGVAPLRPA
                     EYVIFRIGQWTADRKG"
BASE COUNT          416 a          890 c          921 g          412 t
ORIGIN      
        1 gtgcgcgccg tgaactgaag ctcggcgtcg ccgaagtcga gccgaatgcg gtcgccttcg
       61 cgcggcgctc cgctcaaggg aacgctcagg agcgcagtga cgctctgctc aagctccgag
      121 aaagaccact ccgctacggc cgcgggcgga ggcggcggcc ccgcgccgcc aatcacgctc
      181 gccgtcgccg gcaacgggtc gaagcccgag ccactcagcc agcgcgttcg gcaccagagc
      241 gcgtcgccgc acctgacgct cacgaccgca cggcggttcg gcgacgagcc gggcggagac
      301 tgcgctccgc cccccgtcgt cgcggcctcc gtcacgacgg cgagcagcgc gaagccttcg
      361 tcgcggaagc tgaaacgcag caggtcgccc acgcgcacgt ctcccggcga cgagggcgca
      421 agctcgaacg acaaatcgtt cggcgtcgcc ttcgtcacct cgaccgctcg ggtctttaga
      481 gaggcgccca cgcgcaaagc gtccgaccag ctcccctccg agcgcgcgac ggcgaaggcg
      541 ggcgcgagcg cccctccccc gcggcgcgcg agcatcgcgg gcagagggaa gcggttcgag
      601 cgcgcgtcgc gcgcaacgcg cacgacccag caacgccgcc cgccgttgac gaagaaggag
      661 cggacggccg aagcgaggta tgcgcgtgcg ggctcgccgc gctcggggtc tgcggcgagc
      721 ggagtgtcgt cgccgaagac ggcggcgaac tgcgcggcgt cggccacggc gacggggacg
      781 ccgacggggc cggaggccgc gaagcccacg aagaccgtca cgtccatacg gggcagcacc
      841 tcggcgagcg gaggctcctg cacctcgaag cgcacgccgg gcagccgcgc ccccacgttt
      901 ttacgcgaca tcaggagcat cggcctactc gaagtcgagc cgctcgtagg cgagcgtcat
      961 ctcctccatc gccacgtctg tccccttcgc gttgaagggg ccgctcgtgt gcttcgttat
     1021 gcgcgcgttc ctgagcgtcc aggtggcgac gacgttgtga tcctcgctct gcaaatggac
     1081 gaccaccgtt cgcagggcgt ccgggctccc gtcgcggagc tggcttatcc agtcgtagag
     1141 cgccttcgag ccgatgatgc cgcgcttcag ggtcacgtcg gtcaccttag tcatgccgtt
     1201 gaccttgcgc acggagttca gcggctcatt gccgttgcgg tactccgaga cggttatctc
     1261 catcccgagg ccgctcacct cctggaagcc ggcctccacg ccgctcgtac cgccgccccc
     1321 gccgaggtca acgaggaagt tgaactgcga ataggggcgt tcacgtgtga cagccatcag
     1381 tcacctccat tctcacttgt cgtcagaagc tttagccctt ccggtcggca gtccactggc
     1441 cgatgcggaa tatgacgtac tcggcgggcc tgagcggcgc gacgcctatc aggcagacga
     1501 ggcggccgtt gtcgaggtcg ttctgcgtca tggtcgagcg gtcgcagcgc acgaagaaag
     1561 ccttctcggg cttgtcgccg agcagcgcgc ccatcaccca ctcgttgagg aggaagtcct
     1621 cgatggtgcg acgtatgttg ccccagagcg cctcgccgtt cggctcgaag acggcccact
     1681 gcgtcccctt gtcaatcgag cgctcaaggt aggcgaagta gcggcgcagg ttgacgtact
     1741 tccactcggg gtcggaggtc atcgtgcgcg cgccccagag gcggaagccg cgcccctcga
     1801 agtagcggaa gcagttgatg ccctcggggt tgagaacgtc ctgctggctc ttgttgagga
     1861 gcgtctcgaa gccgatggcg aggttgacga cctcgtttgc gggcgccttg aagacggcgc
     1921 ggttcacgtc gttgcgcgcg tagatgcctg cgacgaagcc gctcggcggc aggtgaatct
     1981 cgcgctgcgt gacggggtcg agcacgcgca cccaggggta gtagaaggcc gcgtacttcg
     2041 agtcgtagcg cgcgcgcatg gcgcgcacgt cggagacggc ctggcggtcg ccggagtcaa
     2101 cgacggcgat gcggtagcgc atcttctcag cgtgggcgat gagcaggccg atgacggtct
     2161 gcgcctgcga gcgcgtcgcg gcgttcgcct cgtagccgtg ggtcgagccg ggcgcggcga
     2221 caatagagat gtcctccaag tcctcgaact gcttgagccc cgtcttcttg ctggaagaag
     2281 ggtcgtccga gccctcgtac tcggctgcgg tcgggcggtc gccgtcgttc ccgcccgaaa
     2341 ggttcgcgtc aaccgagcgc tcctcgtcgg tcgagtcatc ccggtcgagc gcggcgcgat
     2401 ggcgcgagtt tgccgaaagc agcgcgctca gaacgtcgag cccgtcggag acggccgagc
     2461 cggccgtgag cacgaagggg agccggagcg cctggctgag cgagccgggg ttctcggcga
     2521 agcgtgagaa gggcgagtcg ggcgagccgg ccgtctcgtg cttcgggtcg agcggcaggt
     2581 tgtcccagac ctgcgtcgtc ccgtcgggca tcgtcgccgt tatcgtcagc gtcacgacc
//
LOCUS       DASPKR010000454         5245 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_197248, whole genome shotgun sequence.
ACCESSION   DASPKR010000454 DASPKR010000000
VERSION     DASPKR010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5245)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5245
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197248"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..938)
                     /locus_tag="VD968_12130"
     CDS             complement(<1..938)
                     /locus_tag="VD968_12130"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HYE15184.1"
                     /translation="MTHEEFVERVARLEAFAEREPSRYALRVGLLAALGYAYVFMVLG
                     VVLLLFGGIIYLSITSGRFNYWALKFGWILLMLAVVVARALYVRVAPPGGIELKREGA
                     PRLFGLVDELTRALQSPPVHKVLVDDDYNAALAQVPRLGLLGWHRNYLVLGLPLMQAL
                     TPEQFRAVLAHEMGHLSGNHGRFGGWIYRVRLTWYQLLVRLEAEGRWGSGIFVKFFNW
                     YAPYFNAYSFVLARRHEYEADGAAARIAGARTMADALVSVDLKGSYLSEKFWPEVFKH
                     AETQAEPARGAFARMAAVLGGPVPLPEASRFLRRSLA"
     gene            1130..2800
                     /locus_tag="VD968_12135"
     CDS             1130..2800
                     /locus_tag="VD968_12135"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HYE15185.1"
                     /translation="MSNAIELMPLGGLGEFGSNCMALRCGDDMILLDVGMGFPEESAY
                     GVDVCIPDFDFLEEYRDQIAAVVLTHGHEDHIGAVPYVLKKFNVPVYASHFTMGLVES
                     KLEEHDLLGDVLLHRVEPREVVEVGAFQIEFIRVSHSLIDCFALAIKTPVGTLIHTGD
                     YKVDETPVIGEPIDLRTLRRYGQEGVLALTSDSTNATVPGRTPSERAVIPDFEEIFSE
                     AEGRIFVATFASSIHRLQIVFDVAQQFDRKVCVLGRSMVKNVEIAERLGYLDLHDGQL
                     VSLQDSRKLADHEIVYLVTGSQGEPRAALSQLSTQSYKGLTIEEGDTVVLSARIIPGN
                     ERSISKLIGEIYKRGGNIIDEKRRLIHVSGHASQEDIRIMTEAVRPRFVIPVHGEYRM
                     LYRHKEFLKNHCDFPEENIILIENGDVLELDGERAVVTEKRDVGRTFIGDSGFEEIGR
                     EVVRERRQLAYDGVVTPVVTVSEETGELEAAPEVVARGIIGMNGNGTAAEFVRDMQRV
                     ITEAVKSAPRAERRDASLLKERVRVELKRFIQKQTGTRPVILPVVVQV"
     gene            2881..3324
                     /locus_tag="VD968_12140"
     CDS             2881..3324
                     /locus_tag="VD968_12140"
                     /inference="COORDINATES: protein motif:HMM:NF025210.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HYE15186.1"
                     /translation="MPEKDVAELLRRARVEVAPGEFVLVGMRREEWRRLLESPELSPR
                     PDAPFMLLSDPFEVTLLLEEEDWRAMRHAARDARVEAGFRLVTLDVELPWDVVGFLAR
                     VTEVLAGAGVAVGAVSAFSRDHLLVKQQDLGRALRALGAHVAELC"
     gene            3338..4111
                     /locus_tag="VD968_12145"
     CDS             3338..4111
                     /locus_tag="VD968_12145"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYE15187.1"
                     /translation="MRYDWKDKVVLLTGASSGIGRALAVELGRRGARLGLLARRAEEL
                     MKTAELVERAGGRALALPADVRDAAQVRAAAERVREHWGDIDILIANAGMSTTTPATR
                     LQAAEAGDVISINVIGVVNSVAAVLPEMVKRRGGHLVAISSLAGYRGLPASGAYSASK
                     AAVSTFFESLRVDLRKSGVAVTVIHPGFIRTPMTAGRKKKLPFLLEVEDAACRIIRAI
                     ERRARTYAFPWQLAAVVRAIRHMPSALYDRLASGSNFRE"
     gene            4151..5035
                     /locus_tag="VD968_12150"
     CDS             4151..5035
                     /locus_tag="VD968_12150"
                     /inference="COORDINATES: protein motif:HMM:NF014703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HYE15188.1"
                     /translation="MNILQAIILGIVQGLTEFIPISSTAHLIFAGRLTGLSQSLSAEQ
                     VTATIAVIQLGTLAAVFIYFARDMWAISHAFVRDHLALLRGGGVPGRDGGGFFSRLSG
                     DARLGWLILIGSLPIGVIGLLFKDVIEGSLTKNLWVIATMMVLVALLLLAAERVGRRR
                     KEMGDLTLGDALAVGFAQVLALVPGASRSGSTMMGGLFAGETRETAARFSFLLSIPAI
                     TASGLLELNEAFEKLPAGSAAPLAVATVVSGVVGYASIWFLLRFLRTHSTGVFIGYRL
                     VVGALVFALLAAGVVAPL"
BASE COUNT          866 a         1790 c         1732 g          857 t
ORIGIN      
        1 gcgagcgagc ggcgcaggaa cctcgaagcc tccggcaggg ggacgggccc gcccagcacg
       61 gccgccatgc gcgcgaaggc gccgcgcgcg ggctcggcct gcgtctcggc gtgcttgaag
      121 acttcgggcc agaacttctc agagaggtac gagcccttca ggtcaacgct cacgagcgcg
      181 tcggccatgg tgcgcgcgcc ggctatccgc gccgcggcgc cgtcggcctc gtactcgtgg
      241 cggcgcgcga gcacgaagga gtaggcgttg aagtagggcg cgtaccagtt gaagaatttg
      301 acgaagatgc cggagcccca gcgcccctcc gcctcgagcc tcacgagtag ctgataccag
      361 gtgagcctaa cgcgataaat ccagccgccg aagcggccgt ggttgccgga gaggtggccc
      421 atctcgtgcg cgagcacggc ccggaactgc tcgggcgtga gcgcctgcat gagcggcagg
      481 cccagcacaa ggtagttcct gtgccagccc aggagcccca gccgcggcac ctgcgcgagc
      541 gccgcgttgt agtcatcgtc cacgagcacc ttgtggacgg gcggcgactg caaggcgcgc
      601 gtcagctcgt caaccagccc gaagaggcgc ggcgcgccct ccctctttag ctctatgccg
      661 ccgggcgggg cgacgcgaac gtagagggcg cgcgccacca cgacggccag catcagcagt
      721 atccagccga acttgagcgc ccagtagttg aagcgcccgc tggtaatgct caggtagatg
      781 atgccgccga agagcagcag cactacgccg agcaccatga agacgtatgc gtacccgagc
      841 gcggccagta gccccacgcg cagcgcgtag cgcgaaggct cgcgctcggc gaaggcttcg
      901 agccgcgcca ccctctcgac gaactcttcg tgagtcatgc ccatagtagt cccccgggat
      961 gttagcagcc tgcggcgcgt gcccgccacc gcaccgaccg caccgaccgc gcgcgagcag
     1021 ggaagtgaag ccgggcggcc gtgtgttata ctcgccgctt actcccccgt ttgatttaca
     1081 cgcggcgggc gcacgatagt gcctgccggt ttggagatga ctgtaaaaag tgagtaacgc
     1141 gattgagttg atgcccctgg gcggcctcgg cgagttcggg agcaactgca tggcgctgcg
     1201 ctgcggcgac gacatgattc tgctcgacgt ggggatgggc ttccccgagg agagcgccta
     1261 cggcgtggac gtttgcatcc ccgatttcga cttcctcgaa gagtaccgcg accagatagc
     1321 ggcggtcgtc ctcacgcacg gccacgagga tcacatcggc gccgtccctt acgtcctgaa
     1381 gaagttcaac gtccccgtct atgcctcgca cttcacgatg gggctcgttg agagcaagct
     1441 agaagagcac gacctgctgg gcgacgtgct gctgcaccgc gtcgagccgc gcgaggtcgt
     1501 cgaggttggc gccttccaga tcgagttcat acgagtctcg cactcgctca tagactgctt
     1561 cgcgctcgcc atcaagacgc cggtcggcac acttattcac acgggcgact acaaggtgga
     1621 cgagacgccc gtcatcggcg agccgattga cctgcgcacc ctccggcgct acgggcagga
     1681 gggcgttctg gcgctcacgt ccgactcgac gaacgccacc gtgccgggcc gcaccccctc
     1741 cgagcgcgcc gtcatccccg acttcgagga gattttctcc gaggcggagg ggcgcatatt
     1801 cgtcgccacc ttcgcgtctt cgatacaccg cctgcaaatc gtcttcgacg tggcgcagca
     1861 gttcgaccgg aaggtctgcg tgctcggccg ctcgatggtc aagaacgtcg agatcgccga
     1921 gcggctcggc tacctcgacc tgcacgacgg gcagctcgtc tctttgcagg actcgcgcaa
     1981 gctcgccgac cacgagatcg tctatctcgt cacgggctcg cagggcgagc cccgcgcggc
     2041 gctctcgcag ctctccacgc agtcctacaa gggcctgact atcgaggagg gcgacaccgt
     2101 cgtcctctcc gcgcgaatca taccgggcaa cgagcgctcc atctcgaagc tcatcggcga
     2161 aatctacaag cgcggcggca acatcattga cgagaagcgc cgcctcattc acgtctccgg
     2221 ccacgcctcg caggaggaca taaggatcat gacggaggca gtccgccccc gcttcgtcat
     2281 ccccgtccac ggcgagtacc gcatgctcta ccgccacaag gagttcctca agaaccactg
     2341 cgacttcccc gaggagaaca tcatcctcat agagaacggc gacgttctgg agctggacgg
     2401 cgagcgcgca gtcgtcaccg agaagcgcga cgtcggccgc acgtttattg gcgactccgg
     2461 cttcgaggag ataggccgcg aggtcgtgcg cgagcggcgc cagctcgcat acgacggcgt
     2521 cgtcacgccc gtcgtcacgg tgagtgaaga gacgggcgag ctggaggccg cgcccgaggt
     2581 cgtcgcgcgc ggcataatcg gcatgaacgg caacggcacg gccgccgagt tcgtccgcga
     2641 catgcagcgc gtcataaccg aggccgtaaa gtccgcaccg cgcgccgagc gccgcgacgc
     2701 gagcctcctc aaggagcgcg tccgcgtgga gctaaagcgc ttcatacaga agcagaccgg
     2761 cacgcggccc gtcatcctgc ccgtcgtcgt gcaggtctga aaaacagatg ccgggtgccg
     2821 ggtgctggat gtcggtttaa aaacgggcca gcatctgacg tccggcatct ggcatccttt
     2881 atgcccgaaa aagatgtcgc cgagcttttg cgccgggcgc gggtcgaggt agcgcccggc
     2941 gagttcgtgc tcgtggggat gcggcgcgag gagtggcggc gtctgcttga gagcccggaa
     3001 ctgagcccgc gcccggacgc gcccttcatg cttctgagcg acccgttcga ggtgactctg
     3061 cttttggagg aggaggactg gcgggcgatg cgccacgccg cgcgcgacgc gcgcgtggag
     3121 gcgggcttca ggctcgtgac gctcgacgtt gaactcccgt gggacgtggt cggtttcctc
     3181 gcgcgggtga ctgaggtgct cgccggggcg ggcgtagcgg tcggcgccgt ctctgccttc
     3241 tcgcgcgacc acctgctcgt caagcagcaa gacctgggca gggcgctgcg cgcgctcggc
     3301 gcgcacgtcg ccgagctatg ctgagccgtg attcgtgatg cgctacgact ggaaggataa
     3361 agtcgtcctg ctcaccggcg cctcttccgg catcgggcgc gcgctggccg tggagcttgg
     3421 ccgccgcggc gcgcggctcg ggctgctcgc gcgtcgggcg gaggagctga tgaagacggc
     3481 agagctggtc gagcgtgccg gggggcgcgc tttggcgctg ccggccgacg tgcgtgacgc
     3541 cgcgcaggtc agggccgccg cggagcgcgt gcgcgagcac tggggcgaca tagacatact
     3601 catcgccaac gccggcatga gcacgacgac tcccgccacc cgattgcaag ccgccgaggc
     3661 gggcgacgta atctccataa acgtcatcgg cgtcgtcaac agcgtcgcgg ccgtgctgcc
     3721 cgagatggtc aagcggcgcg ggggccacct cgtcgccatc tccagcctcg ccggctaccg
     3781 cggcctgccc gcatccggcg cctacagcgc gagcaaggcc gccgtatcca ccttcttcga
     3841 gagcctgcgc gttgacctgc gaaagagcgg cgtcgccgtc accgtcatac accccggctt
     3901 catacgcacg cccatgacgg ccgggcgcaa gaagaagctg cccttcctcc tcgaagtcga
     3961 ggacgctgcc tgccgcatca tacgtgccat cgagcgccgc gcgcgcacct acgccttccc
     4021 gtggcagctc gcggcagtcg tgcgcgcgat acgacacatg ccctcggccc tctacgaccg
     4081 gctcgcctcc ggctccaact tccgcgagta aagctgaacg ccgacccgct tatcgctgac
     4141 agctattacg atgaacattc tccaggccat catcctcggc atcgtgcagg ggctcacgga
     4201 gttcataccc atcagctcga cggcgcacct gattttcgcg ggccgcctga cgggcctttc
     4261 gcagtccctg agcgccgagc aggtgacggc cacgattgcc gtcatccagt tgggcacgct
     4321 cgcggccgtc ttcatctatt tcgcgcgcga catgtgggcg atcagccacg ccttcgtccg
     4381 cgaccacctg gcgctgctgc ggggtggcgg cgtgccgggc cgtgacggcg ggggcttctt
     4441 ctcgcgcctc tcgggcgacg cccggctcgg ctggctcatc cttataggct cgctgccgat
     4501 aggcgtgatc ggccttctct tcaaggacgt gatcgagggc tcgctgacaa agaacctctg
     4561 ggtgatagcg acaatgatgg tcttggtcgc gctccttctg ctcgcggccg aaagggtcgg
     4621 gcgtcgcagg aaggagatgg gagacctcac gctcggcgac gcgctagccg tcggcttcgc
     4681 gcaagtcctg gcgctcgtcc ccggcgcgag ccgctctggc tcgacgatga tgggcggcct
     4741 cttcgcgggc gagacgcgcg agacggcggc gcgcttctcc ttcctgcttt cgataccggc
     4801 gataacggcg agcgggctgc tcgagctcaa cgaagcattc gagaagctgc ccgcggggag
     4861 cgccgcgccg ctcgccgtag cgaccgtggt ctcgggcgtc gtcggctacg cctccatctg
     4921 gttcctgctc cgcttcctgc gcacgcactc cacaggcgtc ttcatcggct acaggctcgt
     4981 cgtcggcgcg ctcgtcttcg cgctgcttgc cgcgggcgtc gtcgcgccgc tctgaggctc
     5041 gcgcggggcc gcgctctcgg ttacacttat cccgcccctc ccgtcgaact cggttaaaca
     5101 cttccccctg cgggattcgg agggtaggac agttaccatg agcgacgaaa cgacaactga
     5161 cgcgggcgca agtctcccgc gctcgcagcg gccgcgcagc ccgcgcgtgc ccgtgaattt
     5221 caccgtcgag ctggaaggcg aggac
//
LOCUS       DASPKR010000455         5506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_584819, whole genome shotgun sequence.
ACCESSION   DASPKR010000455 DASPKR010000000
VERSION     DASPKR010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5506)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5506
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_584819"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..979)
                     /locus_tag="VD968_12155"
     CDS             complement(<1..979)
                     /locus_tag="VD968_12155"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HYE15189.1"
                     /translation="MLKASMHKYIWLVPLLPLLGAAVNGLLGRRLQFPERAVSVIAVG
                     SVALAFLISLSAVASYGFGEHALWPRPYLTSEEGGFPFSHTWIQGGGVELTHGQAGQA
                     ARGSLLDVEWSYQLDPLSAVFMLIVTGVGLCIFVFATGYMHGDKGFYRFFSYLGLFMF
                     MMLVLVMGSNFLMMFVGWEGVGLCSYLLIGYYFDRKEAGDASRKAFITNRVGDFGFAL
                     AVFAIIATFGTTQYTAVFESARAYPVELIGSWGLMSWIALGLFIGACGKSAQIPLYVW
                     LPDAMAGPTPVSALIHAATMVTAGLYMVTRTNVIFQHSQTMMLVVAWSTS"
     gene            complement(1059..1454)
                     /gene="nuoK"
                     /locus_tag="VD968_12160"
     CDS             complement(1059..1454)
                     /gene="nuoK"
                     /locus_tag="VD968_12160"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HYE15190.1"
                     /translation="MSGILTAAALLQGSTWLDNVRQGVAHPDLSKFLVIAALMFAVGV
                     AGVLVRRNIIVIFMSIELILNAANLNFIAFSRYLQDAGSMNAVAGQVFTVFIIVVAAA
                     EAAIGLGIVIALYRNRETIFADKIDLLKW"
     gene            complement(1451..2137)
                     /locus_tag="VD968_12165"
     CDS             complement(1451..2137)
                     /locus_tag="VD968_12165"
                     /inference="COORDINATES: protein motif:HMM:NF012709.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HYE15191.1"
                     /translation="MTLSGWESLFFWVFALAALVAALLTVMAHNAVHSALFLISALVS
                     VAALFLLLGAEFIAGVQILVYVGGVMVLFLFVIMLVNVSAEERGREELFNRPRQVGAG
                     MVFAALLAFGLIYAINRSAGEFAPAGAAGLSPEERAELQADAKRARERGLPRAATGVA
                     KISEDTQTVGASLYRYGGLPFEIASVLLLVAIVGSVLLARTAKQEVAADDAAPDAAAA
                     EAAAETGGEA"
     gene            complement(2145..2678)
                     /locus_tag="VD968_12170"
     CDS             complement(2145..2678)
                     /locus_tag="VD968_12170"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit I"
                     /protein_id="HYE15192.1"
                     /translation="MTLVKVPEPTFKEKLKRFFFVDLIEGLRLTLKFNVGALTDKNSV
                     SGFGIYTEQYPKERPLVAPRFHGAPRLNMDPETHESLCIACNLCALACPEDCIDVIPM
                     DIEMMVGGKPRKKKVLDEFIFDTSRCMFCDLCQEACPTACLELMQEFELATYSRAGFV
                     WNREMLEQGRESKKFEA"
     gene            complement(2692..4026)
                     /gene="nuoH"
                     /locus_tag="VD968_12175"
     CDS             complement(2692..4026)
                     /gene="nuoH"
                     /locus_tag="VD968_12175"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF004741.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HYE15193.1"
                     /translation="MSTPALLAPPNFINDLLLRFFSAETVNYVVWPFIQIGAVVTLVA
                     VWALYASYLERKISAFMQARLGPMRVGKWGLLQPIADAVKLLTKEDFVPEKADPYIFR
                     FAPYISVAATFLTFAVVPFAPDWGVITDVNIGLLFVLAISSVGVLALILAGWSSNSKY
                     ALLGGLRSSAQMVSYEVSMGLSLIGALMFARTLSLSGIVTAQSADSSWIIFYQPLAFV
                     LFLVSGIAENNRAPFDLPEAESELVAGFHTEYSGMRWSLFFMAEYAAMVVVSAVAVVV
                     FLGGWYFPFVWGLTAARGYHNLYVFVSLFVFIAKMAALLYLYFWLRWTFPRYRYDQLM
                     DLGWKWLIPASLLNIVWTALAIVVVQALDGWRGMETVKSIERGLELTGTGKAVMIAFG
                     AAGVLVAAASLSAINWRSRDFNLKKQRRQVRLVNAPKGKPAVSTTAAAPSEG"
     gene            complement(4044..4502)
                     /locus_tag="VD968_12180"
     CDS             complement(4044..4502)
                     /locus_tag="VD968_12180"
                     /EC_number="4.3.2.3"
                     /inference="COORDINATES: protein motif:HMM:NF016040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050385 - ureidoglycolate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0000256 - allantoin catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate lyase"
                     /protein_id="HYE15194.1"
                     /translation="MNVIRLPVRKMTRESFAPYGILLDSRGSVDVDFGLGVPSLTGAT
                     SERREFRFEFMARHRHTMQVFSPLASSQAVICVAPPNGREAPDVENVVAFLVEGRLPY
                     AYFRGTWHTPPFATGEWYSYLVVDRKGTLEDDYELVDLRATRDCYFEIDV"
     gene            complement(4537..>5506)
                     /locus_tag="VD968_12185"
     CDS             complement(4537..>5506)
                     /locus_tag="VD968_12185"
                     /inference="COORDINATES: protein motif:HMM:NF012566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HYE15195.1"
                     /translation="HRGMEKIAENRLYPMIAPYWDRLDYIAAVSNGLVWVETVEQMLG
                     LEVPPRAHYIRTILTELNRISSHLLWLATHGLDIGSFTILLWALREREEILKIFEHQF
                     GARLTCHAWRIGGLPNDAYDGFTEDVTRFIDNFPKRLEEYEGLLSENRIWLGRTVGIG
                     VISAEDAIAIGLSGPALRGSGVAWDVRKSRPYAAYADLDFDVPVGENGDTYDRYLVRL
                     EEMRQSRRIVQQALKQMPDGPVMAKVPKVIKPPAGDYYHSIEGPKGEIGCYLVSDGSS
                     RPYRVRVRPPCLINLQALRQMCVGHLVADVVAVIGTLDIVLGEIDR"
BASE COUNT         1043 a         1783 c         1816 g          864 t
ORIGIN      
        1 gcgaggttga ccaggccacg acgagcatca tcgtctgcga gtgctggaag attacgttcg
       61 tgcgcgtgac catgtagagg ccggccgtca ccatcgtcgc cgcgtgaatg agcgcggaga
      121 cgggcgtggg gccggccatc gcgtccggca gccagacgta gagcggaatc tgcgcgctct
      181 tgccgcacgc gccgatgaag agcccgagcg caatccacga catgaggccc cacgagccga
      241 tgagctcgac ggggtaggcg cgcgccgact cgaagacggc cgtgtactgc gtcgtgccga
      301 aggtggcgat gatggcgaag acggcgagcg cgaagccgaa gtcgccgacg cggttagtta
      361 tgaaagcctt gcgtgaggcg tcgcccgcct ccttgcggtc gaagtagtag ccgatgagca
      421 ggtaggagca caggcccacc ccctcccacc cgacgaacat catcaggaag ttcgacccca
      481 tcacgagcac cagcatcatg aacatgaaga ggccgaggta tgagaagaag cggtagaacc
      541 ctttgtcgcc gtgcatgtag cccgtggcga agacgaatat gcacaagccc acgcccgtca
      601 ctatcagcat gaagacggcc gagagcgggt cgagctggta gctccactca acgtccagta
      661 gcgagccgcg cgcggcctgc ccggcctgcc cgtgcgtaag ctccacgccg ccgccctgaa
      721 tccaggtgtg gctgaacggg aagccgccct cctcgctcgt caggtagggt ctcggccaca
      781 gcgcgtgctc gccgaagccg taggaggcga cggccgacaa gcttatcagg aacgcgagcg
      841 ccaccgaccc gaccgcaatc acggagacgg cccgctccgg gaactggagc ctgcgcccca
      901 gcagcccgtt gacggccgcg ccgaggagcg gcaggagtgg cacgagccag atgtacttgt
      961 gcatagaagc tttcagcaat cagcttccag caatcagctc atcggcggct gtcggctctt
     1021 gtctcgcctg ccgctggtcg ctgaccgctg accgcttttc accatttcaa gaggtcaatc
     1081 ttgtcggcga atatcgtctc gcggttgcgg tagagcgcga tgacgatgcc gaggccgatg
     1141 gcggcctccg cggccgcgac gacgatgatg aagaccgtga agacctggcc ggcgacggcg
     1201 ttcatgctgc ccgcgtcctg aaggtagcgc gagaaggcta tgaagttcag gttcgctgcg
     1261 ttaagtatca gctcgatgga catgaagatg acgatgatgt tgcgccgcac gagcacgccc
     1321 gccacgccga cggcgaacat gagggccgcg atgacgagga acttcgacag atccgggtgc
     1381 gcgacgccct gacggacgtt gtcgagccac gtcgagccct gtagcagcgc cgccgccgtc
     1441 aagatgccgc tcatgcttcg cctcccgtct cggccgcggc ctcggcggcc gccgcgtcgg
     1501 gcgcggcgtc gtccgccgcg acctcctgct tcgccgtgcg cgcgagcagc accgagccga
     1561 ctatcgccac cagcagcagg acgctcgcta tctcgaacgg cagcccgccg tagcggtaga
     1621 ggctcgcgcc cacggtctgc gtatcctcgg aaatcttcgc cacgccggtc gccgcgcgcg
     1681 gaaggccccg ctctctcgcc cgctttgcgt cggcctgcaa ctcggcgcgc tcctcggggc
     1741 ttaggcccgc ggcgccggcc ggagcgaact cgcccgccga gcggttgatg gcgtagatga
     1801 gcccgaaggc caggagcgcg gcgaagacca tgccggcgcc gacctgccgg ggccggttga
     1861 aaagctcctc gcgcccgcgc tcctcggcgc tcacgttgac gagcatgatg acgaagagga
     1921 acaagaccat cacgccgccg acatagacga gaatctgcac gcccgctatg aactcggcgc
     1981 cgagcaggag gaagagcgcg gccaccgaga ccagcgccga gatgaggaag agcgccgagt
     2041 gcaccgcgtt gtgcgccatc acggtcaaaa gggccgccac cagcgccgcc agcgcgaaca
     2101 cccagaagaa gagcgactcc cagccggata aagtcatacg cgccttacgc ctcgaacttc
     2161 ttcgactcgc gcccctgctc caacatctcg cggttccaga cgaagccggc gcgcgagtaa
     2221 gtcgcaagct cgaactcctg catcagctca aggcaggccg tcgggcaggc ctcctggcag
     2281 aggtcgcaga acatgcagcg cgaggtgtcg aagatgaact cgtcgagcac cttcttcttg
     2341 cgcggcttgc cgccgaccat catctcgatg tccatcggga tgacgtctat gcagtcctcg
     2401 gggcaggcca gcgcgcagag gttgcaggcg atgcacaagg attcgtgcgt ctccgggtcc
     2461 atgttcaggc gcggcgcccc gtggaagcgc ggggcgacga gcgggcgctc cttcgggtac
     2521 tgctcggtgt agatgccgaa gccgctcacc gaattcttgt cggtcagggc gccgacgttg
     2581 aacttgagcg tcagcctcag gccctctatc aggtcaacga agaagaagcg ctttagcttc
     2641 tccttgaagg tcggctccgg gacttttacc agtgtcataa atatttctcg ctcacccttc
     2701 gctcggcgcc gcggccgtcg tcgagaccgc gggcttgccc ttcggggcgt taaccagccg
     2761 gacttggcgg cgctgcttct tcaggttgaa gtcgcgcgag cgccagttga tggccgagag
     2821 cgacgccgcg gcgacgagca cgcccgccgc gccgaaggct atcatcacgg ccttgcccgt
     2881 ccccgtaagc tccagcccgc gctctatgga cttgaccgtc tccatcccgc gccagccgtc
     2941 gagcgcctgt acgacgacga tagcgagcgc cgtccagact atgttcaaaa gcgacgcagg
     3001 tatcagccac ttccagccca ggtccatgag ctggtcgtag cggtagcgag ggaacgtcca
     3061 gcgcagccag aagtacaggt agagcagagc ggccatcttc gctatgaaga cgaagaggct
     3121 tacgaagacg tagaggttgt ggtagccgcg cgcggccgta aggccccaca cgaacgggaa
     3181 gtaccagccg ccgaggaaga cgaccaccgc caccgcggag accacgacca tcgccgcgta
     3241 ctccgccatg aagaagagcg accagcgcat gcccgaatac tctgtgtgga agccggcgac
     3301 cagctcggac tcggcctcgg gcaggtcgaa gggcgcgcgg ttgttctcgg cgatgccgct
     3361 cacgaggaag agcacgaagg cgagcggctg gtaaaatatg atccagcttg agtcggccga
     3421 ctgcgccgtg acgatgccgg acaggctgag cgtgcgcgcg aacatgagcg ccccgatgag
     3481 cgagaggccc atcgagactt cgtatgagac catctgcgcc gacgagcgca ggccgcccag
     3541 gagcgcgtac tttgagttcg aagaccagcc ggcgagtatg agcgccagca cgcctaccga
     3601 ggagatggcg agcacgaaga gcagccctat gttcacgtcc gttatcacgc cccagtcggg
     3661 cgcgaacggg acgacggcga aggtcaggaa ggtggcggcg accgagatgt agggcgcgaa
     3721 gcggaagatg taggggtcgg ccttctccgg cacgaagtct tccttagtga ggagcttgac
     3781 cgcgtcggcg atgggctgca agagccccca cttccccacc ctcatcggcc cgagccgggc
     3841 ctgcatgaag gccgaaatct tccgctccag gtagctggcg tagagcgccc agacggcgac
     3901 gagcgtcacg accgccccga tctgtatgaa cggccagacg acgtagttca ccgtctccgc
     3961 gctgaagaac ctcagcagca ggtcgttaat gaagttcggc ggcgcaagca gcgcgggcgt
     4021 gctcatatgt cggtcgcttc cactcagacg tcaatctcga agtagcagtc gcgcgtggcg
     4081 cgcaggtcaa ccagctcgta gtcgtcctct agcgtcccct tgcggtcaac gacgaggtag
     4141 gagtaccact cgccggtggc gaagggcggg gtgtgccagg tgccgcggaa gtatgcgtat
     4201 ggcagccggc cctcaacgag gaaggccaca acgttctcca cgtccggcgc ctcgcgcccg
     4261 ttcgggggcg ccacgcagat taccgcctgc gacgaggcga gcggcgagaa gacctgcatc
     4321 gtgtggcggt gccgggccat gaactcgaag cggaactcgc gccgctccga ggtcgcgccc
     4381 gtaaggctcg ggacgccgag gccgaagtca acgtccacag acccgcggct gtcgagcaga
     4441 atcccgtaag gcgcgaagct ctcgcgcgtc atctttcgca cgggcaggcg gatcacgttc
     4501 ataagaagtc aggagccgaa agtcacgccc cgcccctcac ctgtctatct ccccgagcac
     4561 tatgtcgagg gtgccgatga cggcgaccac gtcggcgacg aggtggccga cgcacatctg
     4621 cctgagcgcc tgaaggttta tcaggcaggg gggccgcacg cgcacgcggt acgggcgcga
     4681 cgagccgtcc gagacgaggt agcagcctat ctcgcccttc ggcccttcga ttgaatggta
     4741 gtagtcgccc gcgggcggct ttatcacctt cgggaccttc gccatcacgg ggccgtcggg
     4801 catctgcttc agagcctgct ggacgatcct tctcgactgc cgcatctctt cgaggcggac
     4861 gaggtatcgg tcgtaggtat cgccgttctc gccgacgggg acgtcgaagt cgaggtccgc
     4921 gtaggccgcg taggggcggc tctttcgcac gtcccacgcg acgcccgagc cgcgcagcgc
     4981 aggccccgag agccctatgg ctatggcgtc ctcggccgag atgacgccga tgccgacggt
     5041 gcggccgagc catatgcggt tctccgacag gagcccctcg tactcttcga gccgcttcgg
     5101 gaagttgtca atgaagcgcg tcacgtcctc ggtgaagccg tcgtaggcgt cgttaggcaa
     5161 gccgccgatg cgccaggcgt ggcaggtcag gcgcgcgccg aactggtgct cgaaaatctt
     5221 cagaatctcc tcgcgctcgc gcagggccca gagcagtatg gtgaacgagc cgatatccaa
     5281 gccgtgcgtg gcgagccaga gcaggtgcga ggagattcgg ttaagctccg tgagtatggt
     5341 gcgtatgtag tgcgcgcgcg gggggacttc gagccccagc atctgctcga ccgtctcgac
     5401 ccagacgagc ccgttcgaga cggcggcgat gtagtcgagc ctgtcccagt agggcgcgat
     5461 catcgggtag aggcggttct cggctatctt ctccatgccg cggtgg
//
LOCUS       DASPKR010000456         4209 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_197737, whole genome shotgun sequence.
ACCESSION   DASPKR010000456 DASPKR010000000
VERSION     DASPKR010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4209)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4209
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197737"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VD968_12190"
     CDS             complement(<1..485)
                     /locus_tag="VD968_12190"
                     /inference="COORDINATES: protein motif:HMM:NF014027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008612 - peptidyl-lysine modification to
                     peptidyl-hypusine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase family protein"
                     /protein_id="HYE15196.1"
                     /translation="MVTQRKPRATKYLTAPIRPVQVDRDRSVAGLLEKMEGAGLGARQ
                     LAEAHRIWLDMLGDNTTIVVAASGALVPAGMRRLLAYVIKNRFVDVLVCSGAMLFHDL
                     HETLGRQHFQAHPSMTDAELEASQITRMWDVLASEEEYSEANEWVGGFTNQLDQTRAY
                     ST"
     gene            complement(584..2515)
                     /gene="speA"
                     /locus_tag="VD968_12195"
     CDS             complement(584..2515)
                     /gene="speA"
                     /locus_tag="VD968_12195"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF003763.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HYE15197.1"
                     /translation="MTTAIEQTLETYGIENWGAGYFGINRKGNLVVHPSESDQSRAAD
                     VKEIIDDLQRRGISTPVLIRFPQLVTAQVRKLQRAFQRSIREYEYQGSHMCVYPMKVN
                     QNRAVVEEYLREGSRYDFGLEAGSKAELYGALAMEQSSDSLLVLNGFKDEEFIELAFL
                     GARSGKRVVIVVEKLNELGHIVAAAERYGEGALPVIGIRVKLYSKGSGRWEKSGGEAA
                     KFGLTTTEILEVIRQLQEAGRLDMLRLLHFHIGSQLTDIKRIKNAMKEAARVYAKIYQ
                     MKVPIELLDVGGGMAVDYDGSKTAFDSSANYTAQEFANDVVYTIMQVCDDENVPHPTI
                     IQESGRYLSAYHAILVTNVLSEIETEVEEITPMEIEDDDPQVVTELGDLRETISAKNY
                     REYYHDALEHRDELFTLFNLGLISLEDRAKGEVLFWDVCERADRYAQQAEYVSEEFTD
                     LRRLLRAKYLTNFSVFRSVPDHWALDQLFPIIPIHRLNKAPTEYATLCDITCDSDGVV
                     DKFVDLHDVKQVLELHKLTEGEPYYIAFMLVGAYQEVMGNNHNLFGAPNEAQVHIDED
                     GYLIKKVVKGTTLGEALERARYERGQLHEGFRRLVAQRVKRGDLTEAEGAEMVESYES
                     RLNSYTYLAVNGEDRRRRR"
     gene            2951..>4209
                     /gene="glnA"
                     /locus_tag="VD968_12200"
     CDS             2951..>4209
                     /gene="glnA"
                     /locus_tag="VD968_12200"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HYE15198.1"
                     /translation="MDSKTALKYAEEHEAKFVSVRFTDLVGAWHHLTFPIHELDEGSF
                     EDGFGFDASSLRGWASIHESDMLLIPDAGRVWMDPFSEEPTLCLIANAVDPITKQGYG
                     LDPRSVATRAESYLRFTGIADTVNFGPEAEFFVFDGVEVETDPHASGYRIHSDEGAWS
                     SGRSGDPERGPNLGYRIRNKEGYVPVPPADTLSDLRSQISLTLEQCGITVECHHHEVA
                     TAGQCEIDFRYSTLLGTADNLQIFKYVVRNTAYQYGKAATFMPKPMYGDNGSGMHCHQ
                     SLWKGEKPLFAGDGYAGLSDLARWYIGGLLKHAAAIVAFAAPTTNSYKRLVPGFEAPV
                     NLAYSARNRSAAIRIPMFSTNPKLKRLEFRPPDPSCNPYLAFAAMLMAGLDGIQNRID
                     PGEPLDKDIYDLSPEELKSVPSLPGSL"
BASE COUNT          698 a         1383 c         1324 g          804 t
ORIGIN      
        1 gtcgagtagg cgcgcgtctg gtcgagctgg ttggtgaagc cgccgaccca ctcgttggcc
       61 tcgctgtact cctcctcgct cgccagcacg tcccacatcc gcgtgatctg cgaggcctct
      121 agctcggcgt ccgtcatcga ggggtgcgcc tggaagtgct ggcggccgag cgtctcgtgc
      181 aggtcgtgga agagcatcgc gcccgagcag acgagcacgt caacgaagcg gttcttgatc
      241 acgtaggcga ggagcctccg catccccgcg ggcacgagcg cgccggaggc cgcgacgacg
      301 atggtcgtgt tgtcgccgag catgtcgagc cagatgcggt gcgcctcggc gagctggcgg
      361 gcgccgagcc ccgcgccctc catcttctcc agaaggccgg ccacggagcg gtcgcggtca
      421 acctgcaccg gccttatcgg cgccgtcaga tacttcgtcg cccgcggttt gcgttgagta
      481 accataattt ttgaatgacg ggtgcgagct ggtgaatgac gaatgagaaa cggcaggcag
      541 ctttaaactc atcactcatc gtcccgcact catcatttct cctttatcgt cgtctccgcc
      601 ggtcttcgcc gttgaccgcg aggtaggtgt aggagttgag gcgcgactcg tatgactcga
      661 ccatctcggc gccctcggcc tcggtcaggt cgcctcgctt gacgcgctgc gcgacgaggc
      721 ggcggaagcc ctcgtggagc tggccgcgct cgtagcgcgc cctctccaac gcctcgccca
      781 gcgtcgtccc cttcacgacc ttcttgatga ggtagccgtc ctcgtcaatg tggacctgcg
      841 cctcgttggg ggcgccgaag aggttgtggt tgttgcccat cacctcctgg taggcgccga
      901 cgagcatgaa ggctatgtag tagggctcgc cctccgtcag cttgtgcagc tccaagacct
      961 gcttcacgtc gtgcaggtca acgaacttgt caacgacgcc gtccgagtcg cacgttatgt
     1021 cgcagagcgt cgcgtactcg gtgggggcct tgttcaagcg gtgtatgggt atgatgggga
     1081 agagctggtc gagcgcccag tggtctggga ccgagcggaa gacggagaag ttcgtgaggt
     1141 acttcgcgcg cagcaggcgg cggaggtctg tgaactcctc cgagacgtac tcggcctgct
     1201 gcgcgtagcg gtctgcgcgc tcgcacacgt cccagaacaa tacctcgccc ttcgcgcggt
     1261 cttccaggga gatgaggccg aggttgaaga gggtgaacag ctcgtcgcgg tgctcgaggg
     1321 cgtcgtggta gtactcgcgg tagttcttcg cggagatggt ctcgcgcagg tcgccgagct
     1381 cggtgacgac ctgcgggtcg tcgtcctcta tctccatcgg cgttatctct tcgacctcgg
     1441 tctctatctc gctcagcacg ttcgtgacga ggatggcgtg gtacgcggag aggtagcgcc
     1501 cagactcctg aatgatcgtc gggtgcggca cgttctcgtc gtcgcagacc tgcatgatgg
     1561 tatagacgac gtcgttggcg aactcctgcg ccgtgtagtt ggccgacgag tcgaaggccg
     1621 tcttcgagcc gtcgtagtca acggccatgc cgccgcccac gtccaggagc tcgatgggga
     1681 ccttcatctg gtaaatcttc gcatagacgc gcgccgcctc cttcatcgcg ttcttgatgc
     1741 gcttgatgtc ggtgagctgc gagcctatgt ggaagtgcag gagccggagc atgtcgagcc
     1801 ggccggcctc ctgtagctgg cgtatgactt cgagtatctc ggtggtggtg aggccgaact
     1861 tagcggcctc gccgcccgac ttctcccagc gccccgagcc cttcgagtag agcttgacgc
     1921 gtatgcctat cactgggagc gcgccctcgc cgtagcgctc ggccgccgcg acgatgtggc
     1981 ccagctcgtt tagcttctcg accactatga cgaccctctt gcccgagcgc gcgccgagga
     2041 acgccagctc tatgaactcc tcgtccttga agccgttcaa gaccagcagg ctgtccgacg
     2101 actgctccat ggcgagcgcg ccgtagagct cggcctttga gccggcctcg agcccgaagt
     2161 cgtagcgcga gccctcgcgc aggtactcct cgacgaccgc ccggttctgg ttgaccttca
     2221 tcggatagac gcacatgtgc gagccctggt actcgtactc gcgtatcgag cgctggaagg
     2281 cgcgctgcaa cttcctcacc tgcgcggtga cgagctgcgg gaagcgtatg aggacgggcg
     2341 tgctgatgcc gcggcgctgg aggtcgtcta tgatctcttt tacgtcggcc gcgcgcgact
     2401 ggtcggactc cgaggggtga accaccaggt tgcctttgcg attgatgccg aagtagccgg
     2461 ccccccaatt ctcgatgccg taggtctcaa gcgtctgttc tatggccgtc gtcaactttc
     2521 tgctctctcc tgcctcccct tgaggttctt gttcgtcggc agactggcgg cgggcgctcc
     2581 tcctgaaggt tccgggtgcc tgtctggttt gaagaaatca ggattggaaa acttaatggc
     2641 gcagagtaac agaaaacggc cgaggcggtc aaaaactatt tttccgggct cccggcggct
     2701 taagtcgcgt gcggcaaagg tttaggcggg gccgcgcggg ggcgccccgg cggcgtgaaa
     2761 caggggccgc gcggcgccgc aggcgtgaaa ccttgacagc cgggcgggcg cggctataat
     2821 gccgcctttt tagagcgtcg ccgcgattta tgacgccacc tccggctctc ttcttgaaaa
     2881 tcacccggcc gccgcgggaa aaggcggcca accccttcca cccccttcag actacaatcc
     2941 aggagacaat atggactcga aaacggcctt gaagtacgcc gaagagcacg aggcgaagtt
     3001 cgtctcggtg cgtttcacag acctcgtcgg cgcctggcac cacctgacat tccccatcca
     3061 cgagctcgac gaaggctcct tcgaggacgg cttcggcttc gacgcctcaa gtttgcgcgg
     3121 ctgggcctcg atacacgagt ccgacatgct gctcatcccg gacgcgggcc gcgtgtggat
     3181 ggatcccttc tccgaggagc cgacgctctg cctcatcgcc aacgccgttg accccatcac
     3241 gaagcagggc tacggcctcg acccgcgctc tgtggcgacg cgcgccgagt cttatttgcg
     3301 cttcacaggg atagccgaca ccgtcaactt cggccccgag gccgagttct tcgtcttcga
     3361 cggcgtggag gtcgagaccg acccgcacgc gtccggctac cgcatacact ccgacgaggg
     3421 cgcgtggagc tctggccgct ccggcgaccc ggagcgcggc ccgaacctcg gctaccgcat
     3481 acgcaacaag gagggctacg tccccgtccc gcccgccgac acgctctccg acctgcgctc
     3541 gcagatttcc ctgacgctcg agcagtgcgg catcacggtc gagtgccacc accacgaggt
     3601 cgccacggcc ggccagtgcg agattgactt ccgctactcg acgcttctcg gcacggccga
     3661 caacctccaa atcttcaagt acgtcgtgcg caacaccgcc taccagtacg gcaaggccgc
     3721 gaccttcatg cccaagccga tgtacggcga caacggcagc ggcatgcact gccaccaaag
     3781 tctctggaag ggcgagaagc ccctgttcgc gggcgacggc tacgccggcc tgtctgattt
     3841 ggcgcggtgg tacatcggcg gcctcctgaa gcacgcggcg gcgatcgtcg ccttcgcggc
     3901 gccgacgacc aacagctaca agcgcttggt gcccggcttc gaggcgccgg tgaacctcgc
     3961 ctactcggcc cgcaaccgct cggcggcgat tcgtatcccg atgttctcga ccaacccgaa
     4021 actgaagcgg ctggagttcc gcccgcccga cccttcgtgc aacccgtacc tcgcgttcgc
     4081 ggcgatgctc atggccgggc tcgacggcat ccagaaccgg atagacccgg gcgagccgct
     4141 cgacaaggac atctacgacc tctcgccgga agagctgaag agcgtcccct cgttgcccgg
     4201 ctcgctcga
//
LOCUS       DASPKR010000457        12902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1233104, whole genome shotgun sequence.
ACCESSION   DASPKR010000457 DASPKR010000000
VERSION     DASPKR010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12902)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12902
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1233104"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(162..593)
                     /locus_tag="VD968_12205"
     CDS             complement(162..593)
                     /locus_tag="VD968_12205"
                     /inference="COORDINATES: protein motif:HMM:NF022281.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2752 domain-containing protein"
                     /protein_id="HYE15199.1"
                     /translation="MESGVKRAKAGLAGAGLLASLAAVRAVATAGETAVLIGGRELPW
                     ACPVKSLLGLPCPSCGMTRSVVLTLAGDLRGAVEMNPAGPLVVLGLLALAALLIFKAL
                     RPAPVKGARPVSLPLRPARVAAAYGALVLAVMLVNWALALA"
     gene            complement(619..1143)
                     /locus_tag="VD968_12210"
     CDS             complement(619..1143)
                     /locus_tag="VD968_12210"
                     /inference="COORDINATES: protein motif:HMM:NF017007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NINE protein"
                     /protein_id="HYE15200.1"
                     /translation="MIACPSCGADNLDGARFCVKCGTTLPAAPAPESWRQSGELNQAQ
                     TEQSAGGSQQSYTPPYSQPPAYSSYNQQQGMYQPGAGGAGTNWQAAGADKKIAAGLCG
                     ILLGGLGVHKFVLGYSTEGIIMLLVCIVGGILTCGLASAAVGIVGLVEGIIYLTKSDE
                     EFVRTYIQNKRGWF"
     gene            1773..3434
                     /locus_tag="VD968_12215"
     CDS             1773..3434
                     /locus_tag="VD968_12215"
                     /inference="COORDINATES: protein motif:HMM:NF014869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M4 family metallopeptidase"
                     /protein_id="HYE15201.1"
                     /translation="MKKVFASILVTALCSIMISPGLVHGQRSRKAEKLARAEAASLLR
                     LQNKLARKGIAPNDVKTLRVFEDKDRPERVHTHVQQTHNGVPVFGGEAIVHLDAVSGE
                     EAQPTTDTLVPDVSVHTTPGMTAKEAVGLAKAQYKAKKGCDECLTGEPQADLWVLRHE
                     GADHLVYRVQLARLDGTEHTSEPVYFIDAHTGALVWGYDNLQTQAATGTGVSLYSGTQ
                     PINTIRSGSSYYMEDLSRAVGTFDNRNSAKINTTMGYITSYGSVYRFADADNLWNAST
                     AKAGVDAHYGAAKVYDYFLSVHGRNGIDGSGGPRTYASVDGSTGLISSIVHFGKSYNN
                     AFWSSSKNQMFYGDGDGVNFSPLVTLDICGHEMQHGITSRTANLTYANESGALNESWS
                     DVFGAMVELYAEGAETTTTWWVGEDANTPGVVGDALRYMDRPHNAGNYGYTANDDPDH
                     YSERYTGTGDNGGVHINSGIPNHVFYLLAKGGPHAHVAGTPVTGIGADKAAAIWYKAL
                     TTYMTSSTNFAGARAATINAADALYGAGSAESLSVAQAWAACGVL"
     gene            complement(3631..4440)
                     /locus_tag="VD968_12220"
     CDS             complement(3631..4440)
                     /locus_tag="VD968_12220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15202.1"
                     /translation="MRPDEQHKTERRRLSFYAALSTALERRGVSFDEFYPRGDALARR
                     MLEEYGAIFLAEGVALPRSYIFESEEEVVRFQREAGWAAHDFDGVTVELQPSAMRALL
                     RACEEARSSGLDVSPRGGSEAGRRSFDDSLRLWRSRCDPALDHWCAEGRLDTSEAERV
                     RRMGTREQVAAVLELEGRGLFFSKDLKKTILHSVAAPGASQHLHMLAFDAAEYEDARV
                     RSVLARHGWFQTVLSDLPHFTYLGLPEEKLPSRGLRRVESHGQTFWVPNTQ"
     gene            4586..4921
                     /locus_tag="VD968_12225"
     CDS             4586..4921
                     /locus_tag="VD968_12225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15203.1"
                     /translation="MSRPAKFEEVLATYKRHGWALARVLARPETLAELGGGASVGGVA
                     AVESSVDAMWFRRASPGGREAWELRLVEGTPYALFELFEPDEAEEDREDVRREMEARL
                     VEHAGGGRA"
     gene            complement(4986..6023)
                     /locus_tag="VD968_12230"
     CDS             complement(4986..6023)
                     /locus_tag="VD968_12230"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HYE15204.1"
                     /translation="MRDEGQPAVTHCPSCNAALVPGMRFCRMCGYRLGEGLEEYVATR
                     RFDGVAPPLTAPAPDAAKTDPFAARQTWAPMAPVAPVAPLAGQEKGASRLSWLANCCN
                     PSRMGWWTWVIMACVLMLVIGVGAKVSRELRGVPAGAVTRPAVAQNSLLAEADGFETA
                     DGGGALLEGLDGPDTSWERAGIIGGDIITAFDGKPVRDEDALRRAIGSTPPGKAVEVE
                     FIRDGETGKVVLTTAAREAYKGIGVLDARPGGRGVLGIDRSNLKRVRVPNSKIYGVEI
                     GDVHRNGPADLAGMKDGDVVIKFGEKIVRTPGDLRLRIAEAAPGSTVVVTIMRGAEQL
                     EIPVKIGRDRD"
     gene            6316..6534
                     /locus_tag="VD968_12235"
     CDS             6316..6534
                     /locus_tag="VD968_12235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15205.1"
                     /translation="MEVTKALAALQPLYGKDNVEIVTETGARVRGVVRSLRQTQALTR
                     PSVKIERADGEVVKIPFAAITEIIDHNR"
     gene            6587..6940
                     /locus_tag="VD968_12240"
     CDS             6587..6940
                     /locus_tag="VD968_12240"
                     /inference="COORDINATES: protein motif:HMM:NF024375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047869 - dimethylpropiothetin
                     dethiomethylase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfonioproprionate lyase family
                     protein"
                     /protein_id="HYE15206.1"
                     /translation="MADSFSLMLDLSRIPWRATRHKGIYLHVLRRDEATGGVAVLIRM
                     EPGCSYPAHLHTGDEEVFILSGGYRDSRGEHRAGDYVLNEAGSAHHPTALEEPAEDCV
                     MLAFTRAPIELIKNG"
     gene            7053..7703
                     /locus_tag="VD968_12245"
     CDS             7053..7703
                     /locus_tag="VD968_12245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15207.1"
                     /translation="MTIEDFGARVASVWHGLRPSTRSLVERALIAPPAPQQQPAPAAT
                     TSQTPRTDNAYDARSEWELSRLLEALDERAAERGAAAVLDAEQSRELSHVAETCAAVL
                     HREARSAEVFAQLLERALLVRDYRRVDALADAASARLAPSEICEMARQDNPAVRAIAR
                     EALLQLPTSVLVALLGDPVDAEVARVALECQADEYESEEARLIVCALEQVDAEEDF"
     gene            complement(7796..8644)
                     /gene="ispH"
                     /locus_tag="VD968_12250"
     CDS             complement(7796..8644)
                     /gene="ispH"
                     /locus_tag="VD968_12250"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: protein motif:HMM:NF002187.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0015968 - stringent response [Evidence
                     IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HYE15208.1"
                     /translation="MQVLLADEYGFCFGVERAVEMVEEALSGGATVRTLGPLIHNTQE
                     IERLEAGGVRTINAPEEVGEGETAVIRAHGVTPQVQRDLEARAMKVVDATCPFVTKVQ
                     KLAERAAAQGRDVVVVGNPDHPEMIGVVGYAPDHSHVVRDASEVAALPRLRAPLVVSQ
                     TTLKLKTFLEAADAVRDKSDGEPQIVNTICSATRDRQDAARALAGHVDAFYVIGGKHS
                     SNSLKLLSVCKEQCERSFLIETPDEINPEDLRGARRVGVTAGASTPNWLIEQVVGRLR
                     ELGETD"
     gene            complement(8667..8957)
                     /locus_tag="VD968_12255"
     CDS             complement(8667..8957)
                     /locus_tag="VD968_12255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15209.1"
                     /translation="MASTNDPRYNTGNPLCDAVRFLCDASFAVLPRDAARQLGELEKN
                     FWGGVRWFADKNVGWIEDSLAAADRLREEWRRGCRTAGPEPEPMVPEPPPTL"
     gene            9228..9770
                     /locus_tag="VD968_12260"
     CDS             9228..9770
                     /locus_tag="VD968_12260"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HYE15210.1"
                     /translation="MKNSLTGDAGEFLMHLIVALTLMLFCLVPVGAQELTRPKAEIKG
                     TFGGAGFLDADAHTVAGGSVRFYLTKRFSIEPELLYMRASQRDEDVVFTPNVALDVVD
                     PSNKVVPYVIGGVGVLHHRSDFGFFRDSSTGWTASAGGGVKIYITDKLYIAPEARIGW
                     EPLARATVSVGYTFSGRDRR"
     gene            complement(9779..10396)
                     /locus_tag="VD968_12265"
     CDS             complement(9779..10396)
                     /locus_tag="VD968_12265"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HYE15211.1"
                     /translation="MGEVKKGEPVVYVALGDSTGVGIGARKGGGYPARLLERIERVRP
                     GSRLVNLCVSGATSADVLRSQAGRVGAERPTLVTLAIGINDATRQVPPDQFARNFEAI
                     VARLREQTQAPVVVSNIPDVAFAPAVPAFFREEARRRIQAFNSLIADVAGRHGLRVVD
                     AYEKSHAVIPRHPEFFSPDGFHPSDEGYEFWAFEMWPAVKEAIGE"
     gene            complement(10497..>12902)
                     /locus_tag="VD968_12270"
     CDS             complement(10497..>12902)
                     /locus_tag="VD968_12270"
                     /inference="COORDINATES: protein motif:HMM:NF019758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HYE15212.1"
                     /translation="YHEFTAEFGEGRVGILTGDRKERSDAPLIVGTTEVYRNQLFDAL
                     RGGQQVQADLVVLDEAHYLSDEERGHVWEEAIILTPPRVRMLLLSATVGRAEEFADWV
                     SEVRGHTCRVVSRPGARPVPLRAAFLYPDGGLAPLFNEHGGLNTEIARFMQTARGERQ
                     QQHSRFGPRGGGHTRRPGLPEMPPGILLAALASYDLLPAIVFLPTRRRCDEAAAEAAY
                     APRRGAADPERRERRREILTRLADAYPEIRKHRHWDMVLRGGVASHHAGHLPAWKLAI
                     EKLMSAGLLDAIFATATVAAGVDFPARTVVLENIDVRTGHGWRPLSASELQQMTGRAG
                     RRGRDRVGFIVAAPGLHQNPQKMASLLHAEPDPLVSQFRATYTSLLNLLDAYGTFAQV
                     RDIAERSFSRRDAAEELARVERARADAERRMAEKLAAAGCDLPAEVARGLERLASARQ
                     RLIEDAPGTRADAFMRWLDEEVVPGRVVGMGRGSRRLVFVTERRGDGLVGFRENGHRA
                     SLALERVGRVYEERHKLDEASREAAFELVRAGQATPLREPRLREARAPSEEAVALIND
                     LIDSLSSATPEGSERSRCEAALWAVMEEAETVERMERRAEAMRAEVWHPFEQRARVLH
                     HFGYLDFFAERVTERGRWLADLRLDRPLLVGEAIERGLFASLDAPRAAGLMAALASDA
                     ERDYGELELDDALITALAKFDRLAYDVASVEWRQDIEPAPEINFSAAATAARWAAGVE
                     WPALVRQTRAEEGDLFRMLSRTGESLLQVSNLKETHPEAARIAAEAAASVLREPVRSE
                     AAV"
BASE COUNT         2044 a         4482 c         4363 g         2013 t
ORIGIN      
        1 gggggcgcgg ccgaacggca cgagtgaaac gggctttcga ctgttcgctt tggggagcct
       61 gttccgagcc ctgcctctcc gacgtgaggc gcgggcagcc gagagtttag catttttccg
      121 ccgcagcgca acgctaaatt agcgcgccgg ccggacgggc gtcaggcgag cgcgagcgcc
      181 cagttgacta gcatgacggc gaggacgagc gcgccgtagg ctgcggcgac ccgcgcaggg
      241 cggaggggga gggagacggg ccgggcgcct ttaacgggcg cggggcgcag ggctttgaag
      301 ataagcagcg cggcgagcgc gagcaagccg aggacgacga gcgggccggc cgggttcatt
      361 tcgacggcgc cacgcaggtc gcccgcgagc gtgaggacga cgctgcgcgt catcccgcac
      421 gaagggcagg gcaggcccag caggctcttg acggggcagg cccacggaag ctcgcgcccg
      481 ccgatgagca cggccgtctc gcccgccgtc gcgacggcgc gcacggccgc gagcgacgcg
      541 agcagccccg cgccggccag ccccgccttc gccctcttca cgcccgactc cataaagcct
      601 cggggccggg gcggctcctc agaaccagcc ccgcttgttc tgtatgtaag tccgcacgaa
      661 ctcctcgtcg gacttcgtga ggtagatgat gccctcgacc aggccgacga tgccgacggc
      721 cgccgacgcg aggccgcacg tcagtatgcc gccgacgatg cagacgagca gcatgatgat
      781 gccctcggtc gagtaaccga ggacgaactt gtggacgccg aggccaccca ggagtatgcc
      841 gcacaggccg gcggctatct tcttgtcggc gcccgccgcc tgccagttag tccccgcgcc
      901 gccggcgccc ggctggtaca tgccctgctg ctggttgtac gaggagtaag cggggggctg
      961 cgagtagggc ggcgtgtaag actgctgcga gccgcccgcg gactgttcgg tctgcgcctg
     1021 gttcagctct ccgctctgcc gccaagactc cggggcgggg gccgcgggca atgtcgttcc
     1081 gcacttgacg cagaagcgcg cgccatcgag gttgtcggcg ccgcaggaag ggcatgcgat
     1141 catcggggaa ttctcctttt aacgttatcg ggcctgccgt aattctcaca tcctgcccgt
     1201 tcccgtaaag aattgtcaac gaaactgttt gccggccccg cccggatcgg ccgtcgaatt
     1261 tttgtcgggc cgggccgaga tcggcgccgg attgtagcat gcgggtgacc gccgtttctc
     1321 gtagggcatg gccggcggcc tccgggcccg ggagtttttt tgtaaacctt cagcgcgcct
     1381 gaagcaactg gaaaggcgac tcgtccatct tatgcgcggt tttcattagc ctgcactttg
     1441 ggggcgcggg ccctgaccgt tcccgccgcg cctttctacc caaagccccg tgcgccgcgg
     1501 gcggtgtgta aaccgcagtc gccgggctcg ctgtcaaaag cgagcgtcgc ctgtggctag
     1561 ctttaatgcc ttccggaacc cggccttcag tcgagtcggc gcaggttcca tcatagacgc
     1621 aaattcataa cctcacgccc ttgcggagag ttgcgggttc ttcaaccgta ataactgtgc
     1681 tcatacctct gcactatctt tcaagagggg cctcgcccgg cgggcgggct ctttctcacc
     1741 attaacctcg caacctctcc aaaggagtag aaatgaagaa agtttttgcg tcgattctcg
     1801 ttacagccct gtgctctatc atgatctcgc cggggctcgt tcacggccag cggtcgcgca
     1861 aggccgaaaa gctggcgcgg gccgaagctg ccagcctgct gcgcctccag aataaactcg
     1921 cccggaaggg catagcccct aatgacgtta agaccctgcg cgtcttcgag gacaaggacc
     1981 gcccggagcg cgtgcacacg cacgtgcagc agacccataa cggagtcccc gtcttcggcg
     2041 gcgaggcgat agtccacctc gacgccgtga gcggggagga ggcccagccg acgaccgaca
     2101 ccctcgtccc cgatgtgtcc gtccacacca caccgggcat gacggcgaaa gaggcggtcg
     2161 ggctagccaa ggcccagtac aaggcgaaga agggctgcga cgaatgcctc acgggcgagc
     2221 cgcaggccga cctgtgggtg ctccgccacg agggggccga tcacctcgtc taccgcgtgc
     2281 agctcgcccg cctcgacggc accgagcaca cgtccgagcc cgtctacttc atagacgccc
     2341 acacgggcgc cctcgtgtgg ggctacgaca acttgcagac gcaggccgcg accggcaccg
     2401 gcgtctcgct ctacagcggc acgcagccca tcaacaccat ccggtcgggc agcagctact
     2461 acatggaaga cctctcgcgc gccgtcggca ctttcgacaa ccgcaactcg gcgaagatca
     2521 acaccacgat gggctacatc accagctacg gctcggtcta ccgcttcgcc gacgccgaca
     2581 acctgtggaa cgcctcgacg gcgaaggcgg gcgttgacgc ccactacggc gcggcgaagg
     2641 tttacgacta cttcctcagc gtgcacgggc gcaacggcat agacggctcg ggcggccccc
     2701 gcacctacgc ctccgtagac ggctcgaccg gcctcatcag ctccatcgtc cacttcggca
     2761 agagctacaa caacgccttc tggagcagct ccaagaacca gatgttttac ggcgacggcg
     2821 acggcgtgaa cttctcgccc ctcgtcacgc tggacatctg cggccacgag atgcagcacg
     2881 gcatcacctc gcgcacggcg aacctgacct acgcgaacga gtccggcgcg ctcaacgagt
     2941 cttggtctga cgtgttcggc gcgatggtcg agctctacgc cgagggcgcg gagacgacca
     3001 cgacgtggtg ggtcggcgag gacgccaaca cgcccggcgt cgtaggcgac gccctgcgct
     3061 acatggacag gccgcacaac gcgggcaact acggctacac ggccaacgac gaccccgacc
     3121 actactcgga gcgctacacc ggcacgggtg ataacggcgg cgttcacatc aactcgggga
     3181 tacccaacca cgtcttctat ctgctcgcga agggcggccc gcacgcgcac gtggccggga
     3241 ccccggtgac gggcatcggc gccgacaagg cggccgcaat ctggtacaag gcgctcacca
     3301 cctacatgac ctcttcgacc aacttcgcgg gcgcacgcgc ggcgaccatc aacgccgccg
     3361 acgccctcta cggcgccggc agcgccgagt cactttccgt cgcccaggcc tgggccgcct
     3421 gcggggtact ctaggtttcg gcccttagct tagcgcacag tcggaggggg gcgcggcgtc
     3481 aactacacgc cgcgcccccc tcacgtctga gcgcgcggtg agcccagggc cgagttatca
     3541 tccttcaaaa cgatatcggc gaccgcaaaa caccggcccg taagggcgac ctcgccgtcc
     3601 cggccgggaa ccgtcgcagg ttggcgacct tcactgcgtg ttcggcaccc agaaggtctg
     3661 cccgtgcgac tcgacgcggc gcaggccgcg cgaggggagc ttctcttcgg ggaggccgag
     3721 gtaggtgaag tgcggcaggt cgctcaggac ggtctggaac cagccgtggc gcgcgagcac
     3781 cgagcgcacg cgcgcgtcct cgtactcggc tgcgtcgaag gcgagcatgt gcaggtgctg
     3841 cgaagcgccg ggggcggcga ccgagtgcag tatcgtcttc ttcaagtcct tgctgaagaa
     3901 aaggccgcgg ccttcaagct cgagcacggc ggcgacctgc tcgcgcgtcc ccatccggcg
     3961 cacgcgctcg gcctccgaag tgtcgagccg cccctcagcg caccagtggt cgagcgccgg
     4021 gtcgcagcgc gagcgccaga ggcggagcga gtcgtcgaag ctgcggcggc cggcctcgct
     4081 ccctccgcgc ggcgaaacgt caaggcccga agagcgagcc tcttcgcatg cgcggagcag
     4141 ggcgcgcatc gcgctgggct gcaactccac ggtcacgccg tcgaagtcgt gcgccgccca
     4201 gccggcctcg cgctggaagc gcacgacttc ctcctcgctc tcgaagatgt aggagcgggg
     4261 cagcgccact ccctcggcca gaaaaatcgc gccgtactct tctagcatgc ggcgcgcgag
     4321 cgcgtcgccg cgcgggtaaa actcgtcgaa ggagaccccg cgtcgttcga gcgctgtcga
     4381 gagcgcggcg tagaaggaga gccgacgccg ctcggtcttg tgttgttcgt cagggcgcaa
     4441 acttttcagc cggggctcct ctccggggcg gaggtcgtgg gtcgggcctt cggaaagagt
     4501 ttagggataa gacgcgggcc gtggcaagcg gggcggcctg cccgccgggg cagcgcgtgt
     4561 tgtatcctac gcgccaaggg atgttatgag caggccggcg aagttcgaag aggttctggc
     4621 gacgtacaag aggcacggct gggcgctcgc gcgcgtgctc gcgcgccccg agacgctggc
     4681 cgagcttggc gggggcgcaa gcgtcggggg agtcgccgcc gtcgagtcgt ccgtggacgc
     4741 catgtggttc cgccgagcct cgccgggcgg gcgcgaggct tgggagttgc ggctggtgga
     4801 ggggacgcct tacgcgctct tcgagctgtt cgagccggac gaggccgagg aagaccgcga
     4861 ggacgtgcgc cgcgagatgg aggcccgcct cgtcgagcac gccggagggg gccgtgcgtg
     4921 aaaagagaag gaggactaga gacgccgcgt ctctagtcct ccttcgcccg accttcgggc
     4981 ccgcctcagt cgcggtcgcg gcctatctta accggaattt ctagctgctc ggcgccgcgc
     5041 atgatggtga cgacgacggt gctgccgggc gcggcttcgg ctatgcgcaa ccgcaggtcg
     5101 ccgggcgtgc gcactatctt ctcgccgaac ttgatgacaa cgtcgccgtc tttcatcccg
     5161 gcaaggtcgg ccggcccgtt gcggtgaacg tcgcctatct cgactccgta aatcttcgag
     5221 ttcgggacgc gcacgcgctt caggttgctg cggtctatgc cgagcacgcc gcggccgccc
     5281 ggcctcgcgt ccaggacgcc gatgcccttg taagcctccc tcgctgcggt cgtgagcacg
     5341 accttgcccg tctcgccgtc gcgtatgaac tcgacctcta cggccttgcc cggaggcgtc
     5401 gagccaatgg ccctgcgcag cgcgtcctcg tcgcggacgg gcttgccgtc gaaggccgtg
     5461 atgatgtcgc cgccgataat gcccgcgcgc tcccaggagg tgtcggggcc gtccagccct
     5521 tcgaggagcg cgccgccgcc gtcggccgtc tcgaagccgt cggcctcggc gagcagagag
     5581 ttctgcgcga cggccgggcg cgtgaccgcc ccggccggca cgcccctcag ctcgcgcgag
     5641 accttcgcgc cgacgccgat gacgagcatg aggacgcacg ccataatcac ccaagtccac
     5701 cagcccatgc gcgaagggtt gcagcagttg gcgagccacg acaggcgcga ggctcccttc
     5761 tcctgccccg cgagcggggc caccggcgcg acgggcgcca tcggcgccca ggtctgacgg
     5821 gcggcgaacg ggtcagtctt tgcggcgtcg ggcgcggggg ccgtgagcgg cggcgcgacg
     5881 ccgtcgaagc gccgcgtcgc cacgtactcc tcaaggccct cgcccaagcg gtagccgcac
     5941 atgcggcaga agcgcatgcc cggcaccagc gcggcgttgc agctcgggca atgtgttacg
     6001 gccggctggc cttcgtctcg catctcttcc tctcttcccg gtctctcttg cgggcgcccg
     6061 acgggggcgg tgactgcttc cgcggggctt ccctcgaagg cgtgtgctag aactatacgc
     6121 ctttcggagc gccgcggttg catccccgcc gccgcggcct tagactctgg cgcaggcata
     6181 aactcaacag ccctcagcca ttttcgcccc gcccgccgcc gcgcgcaagc gcgccgcgcg
     6241 gcgtggcacg gcgggtgctc tcggcgtggc ggcttttagt tttcggccag atcgttcacc
     6301 gcccggagaa agcaagtgga agtcacaaag gcactggctg ctttgcagcc gctctacggc
     6361 aaggacaacg tcgagatagt gacggagacg ggcgcgcgcg tccgaggtgt cgtccgaagc
     6421 ctgcggcaga cgcaggccct cacgcgcccc agcgtcaaga tagagcgcgc cgacggcgag
     6481 gtcgtcaaaa tccccttcgc cgccatcacg gaaataattg accacaacag ataagccgtc
     6541 ggcggtcagc tatcagcttt tgtcttctgt tgatagctga ctgctggtgg ctgacagctt
     6601 ctctctcatg ctcgacctct cacgaatccc ctggcgcgcg acgaggcaca aggggattta
     6661 cctgcacgtg ctcaggcgcg acgaggcgac gggcggtgtc gccgtgctga tacgcatgga
     6721 gccgggctgc tcttaccccg cgcaccttca cacgggcgac gaggaggtct tcatactgag
     6781 cggcggctac cgcgactcgc gcggggagca ccgcgccggc gactacgtcc tcaacgaggc
     6841 gggctccgca caccacccca cggccctcga agagccggcc gaggattgcg tcatgctcgc
     6901 gtttacgcgc gcgcccatcg agctgataaa gaacggctga aagtttcggc taacggttgc
     6961 caaacgccgc cgcttttgct gtatagtagc ccgcgtgggc ggcacgaaag gcagtcccct
     7021 cacccgcccg gactggagaa gttcttctga agatgacgat tgaggatttc ggagcgcgcg
     7081 tcgccagcgt ctggcatggg ctgaggccct cgacccgcag cctcgtcgag cgcgccctta
     7141 tcgcgccacc ggccccacag cagcagcccg cgccggccgc gactacttca caaactccgc
     7201 gcaccgacaa cgcctacgac gcccgctccg agtgggagct gagccgcctg ctcgaagcac
     7261 tggacgagcg cgcggccgag cgcggcgcgg ccgcagtgct cgacgccgag cagtcgcgcg
     7321 agctttcgca cgtcgccgag acctgcgccg ccgtcctcca ccgcgaggcg cgctcggccg
     7381 aggtcttcgc gcagctcctg gagcgcgcgc tgctcgtcag ggactacagg cgcgttgacg
     7441 cgctcgccga cgcagcctcg gcccggctcg ccccgagcga gatttgcgag atggcgcggc
     7501 aggacaaccc ggccgtgcgc gcgatagcgc gcgaggcgct gctgcaactg cccacctccg
     7561 tcctcgtcgc cctgctcggc gaccccgttg acgccgaggt ggcgcgcgtc gccctcgaat
     7621 gccaggccga cgagtacgag tccgaagagg cgcgcctcat cgtctgcgcc ctcgaacagg
     7681 ttgacgcgga agaagacttc taagacgaga ggctaggggc cagagactgg gggccggtca
     7741 ggagcttgac tccctgaccg gcccccagtc tctggcccct agcctctatg ccgtcttaat
     7801 cagtttcgcc cagttcgcgc aggcgcccga cgacctgctc gattagccag ttgggcgtcg
     7861 aggcgccggc cgttacgccg acgcggcgcg cgccgcgaag gtcttccggg tttatctcgt
     7921 ccggcgtctc gatcaggaag cttcgctcgc actgctcctt gcagaccgaa agcagcttga
     7981 ggctgttcga cgagtgcttg ccgccgatga cgtagaaggc gtcaacgtgg ccggcgagcg
     8041 cccgcgccgc gtcctgccgg tcgcgcgtag ccgagcagat ggtgttgact atctgtggct
     8101 cgccgtccga cttgtcgcgc acggcgtcgg cggcttcgag gaaagtcttg agcttcagtg
     8161 tcgtctgcga cacgacgagc ggcgcgcgca ggcgcggcag cgccgccact tccgaggcgt
     8221 ctcttacgac gtgcgagtgg tcgggcgcgt agccgacgac gccaatcatc tccgggtggt
     8281 ccgggttccc gacgacgacc acgtcgcgcc cctgcgccgc cgcgcgctcg gcgagcttct
     8341 gcaccttcgt cacgaacggg caggtcgcgt ccacgacctt catggcgcgg gcctcaaggt
     8401 cgcgctgcac ctgcggcgtc accccgtgcg cgcgtatgac ggccgtctcg ccctcgccca
     8461 cctcttcggg cgcgttgatg gtgcggacgc ccccggcttc gaggcgctct atctcctgcg
     8521 tgttgtggat gagaggcccg agcgtgcgca cggtcgcgcc gcccgagagg gcctcctcga
     8581 ccatctcgac ggcgcgctcg acgccgaagc agaaaccgta ctcgtcggcc aaaagaacct
     8641 gcatcgcgac tccgttaatt aacctgctac aaagttggcg ggggctcagg caccatcggc
     8701 tccggctccg gccccgcggt gcggcagcct cggcgccact cctcgcgcag ccggtcggcc
     8761 gccgcgaggc tatcctctat ccagcccacg ttcttgtcgg cgaaccagcg cacgccgccc
     8821 cagaagttct tctcgagctc gcccaactgc cgcgccgcgt cgcgcgggag cacggcgaag
     8881 gacgcgtcgc acaggaaccg caccgcgtcg cagagcgggt tgccagtgtt gtaccgcgga
     8941 tcgttcgttg atgccatgtg ttttcgatac ctcctaacac aagccatacg gccgcgcgcg
     9001 gccccgcgtt cccacacatc ttaaagaagg caaaaggcaa aggcaaaccc gaggcacggc
     9061 gcggcgccgg agcctttttc tttcgattgg agcaattccg tcagccgcct ctacgccgcc
     9121 gcccgcgccc gcgccggggt tttgaaggct tcagcgcgag gcacggcggt tgccctctgc
     9181 ggggccgcgg taatttctat cccaaacgca ccggagacgg aaatttcatg aaaaacagtt
     9241 tgacggggga cgcgggcgag ttcctcatgc acttaatcgt cgccctcacg ctcatgctct
     9301 tctgcctcgt gccggtcggc gcgcaggagt tgacgcggcc gaaggccgag attaaaggca
     9361 cgttcggcgg cgcgggcttc ctcgacgccg acgcgcacac ggtcgcgggc ggctcggtgc
     9421 gcttctactt gacgaagcgc ttcagcattg agccggaact cctctacatg cgcgcgtcgc
     9481 aaagggacga ggacgttgtc ttcacgccca acgtggcctt agacgtggtt gacccgtcga
     9541 ataaggtcgt cccgtacgtc atcggcggcg tcggcgtgct gcaccaccgc tccgacttcg
     9601 ggttcttccg cgactcgtcc acgggctgga cagcgagtgc gggcggcggc gtcaaaatct
     9661 acatcacgga caagctctac atcgcccccg aggcgcgcat cggctgggag ccgctcgcgc
     9721 gcgccaccgt cagcgtcggc tacaccttct cgggcaggga cagaaggtaa tcccggcttc
     9781 attcgccgat ggcttccttg acggcgggcc acatctcgaa ggcccagaac tcgtagccct
     9841 cgtcggaagg gtggaagccg tcgggcgaga agaactcggg gtgcctgggg attacggcgt
     9901 ggctcttctc gtaggcgtca acgacgcgga ggccgtggcg gccggctaca tccgcgataa
     9961 gcgagttgaa cgcctgtatc cgacgcctgg cctcttcgcg gaagaaggcg gggacggccg
    10021 gggcgaaggc cacgtcgggg atgttggaga cgacgacggg cgcctgcgtt tgctcgcgca
    10081 ggcgcgcgac tatcgcctcg aagttccgcg cgaactgatc gggcggcacc tgccgcgtcg
    10141 cgtcgttgat gccgattgcg agcgtgacga gcgtgggccg ctcggccccg acgcgcccgg
    10201 cctgcgagcg caaaacgtcg gcgctcgtcg caccgctcac gcacaagttg acgaggcgtg
    10261 agccgggccg cacccgctcg atgcgctcga gcagccgcgc cgggtagcca ccgcccttgc
    10321 gcgcccctat gccgacgccc gtcgagtcgc ccagcgcaac atagacgacg ggctcgccct
    10381 tcttcacttc ccccataccc gtcccgactt cacctcccga gccttcccgg ccgcacgccg
    10441 aagatgacag cgaggccgcg agcagcgtga ttgtcaacag cgcggccctc acgacttcag
    10501 accgccgcct ccgagcgcac gggctcgcgc aggactgagg cggcggcctc cgcggcgatg
    10561 cgcgcggcct cggggtgcgt ctctttcaag ttcgagactt gcaggagcga ctcgcccgtg
    10621 cgcgagagca ttcggaagag gtcgccctcc tcggcgcgag tctgccggac gagcgcgggc
    10681 cactcgacac ccgcggccca gcgcgcggcc gtcgccgcag ccgagaagtt gatctccggc
    10741 gcaggctcta tgtcctgccg ccactcgacg ctcgcaacgt cgtaggcgag gcggtcgaac
    10801 ttggcgagcg cggtgatgag agcgtcgtcg agctcgagct cgccgtagtc gcgctcggcg
    10861 tcggaggcga gcgcggccat aaggcccgcg gctcgcggcg cgtcgagcga ggcgaagagg
    10921 ccgcgctcga tggcctcgcc gacgaggagc gggcggtcga gacggaggtc agcgagccag
    10981 cggccccgct ctgtgacgcg ctcggcgaag aagtcgaggt agccgaagtg gtggagcacg
    11041 cgcgcgcgtt gctcgaaggg gtgccagact tcggcgcgca tggcctctgc gcgccgctcc
    11101 atgcgctcga ccgtttcggc ctcctccatg acggcccaca gcgccgcctc gcaccgcgag
    11161 cgctcgctgc cctccggggt cgctgacgag aggctgtcaa tcaggtcgtt tatgagtgcg
    11221 acggcctcct ccgaaggcgc gcgcgcttcg cgcagccgcg gctcgcgcag cggcgtcgcc
    11281 tgcccggcgc gcaccaactc gaaggctgcc tcgcgcgaag cctcgtcgag cttatgtctc
    11341 tcttcgtaaa ccctgccgac ccgttcgagc gcgagcgagg cgcggtggcc gttctcgcgg
    11401 aagccgacca ggccgtcgcc gcgccgctcg gtgacgaaga cgaggcggcg gctgccgcgc
    11461 cccatcccga cgacgcggcc cggcacgacc tcctcgtcga gccagcgcat gaaggcgtcg
    11521 gcgcgcgtcc ccggcgcgtc ttcgatcagt cgctggcgcg cgctcgcgag cctctcgagc
    11581 ccgcgcgcga cctccgcggg caggtcgcag ccggctgccg cgagcttctc cgccatcctg
    11641 cgctcggcgt cggcgcgcgc ccgctcgacg cgcgcgagct cttcggccgc gtcgcggcgc
    11701 gagaagctgc gctcggcgat gtcgcgcacc tgcgcgaagg tgccgtaggc gtcaagcaga
    11761 ttcagtagcg acgtgtaggt cgcgcggaac tggcttacca gcgggtcggg ctcggcgtgc
    11821 aggagcgaag ccatcttctg cgggttctgg tgcaggcccg gcgcggcgac gatgaagccg
    11881 acgcggtcgc ggccccggcg gccggcgcgg cccgtcatct gctgcaactc cgatgcggag
    11941 agcggccgcc agccgtggcc cgtccgaacg tctatgttct caaggacgac cgtgcgggcc
    12001 gggaagtcaa cgccggccgc gacggtcgcc gtcgcgaaga tggcgtcgag cagcccggcg
    12061 ctcatcaact tctcaatcgc cagcttccac gccgggaggt gtcccgcgtg gtgcgaggcg
    12121 acgccgccgc gcaagaccat atcccagtgg cggtgcttgc ggatttccgg gtaggcgtcg
    12181 gcgaggcgcg tgagaatctc tcgccggcgc tcgcgcctct cggggtcggc cgcgcctcgg
    12241 cgcggggcgt atgcggcctc ggccgcggcc tcgtcgcagc ggcgccgcgt gggcagaaag
    12301 acaatcgccg gcaggaggtc gtaggaggcg agcgcggcca aaagtatccc cggcggcatc
    12361 tcgggcagcc ccggccgacg cgtgtggccg ccgcccctcg gcccgaagcg gctgtgctgc
    12421 tgctgtcgtt cgccgcgcgc cgtctgcatg aagcgcgcta tctccgtgtt gagcccgccg
    12481 tgctcattga agagcggcgc cagcccgccg tccgggtaga ggaaggccgc gcgcagcggc
    12541 acgggccgcg cgccggggcg cgagacgacg cggcacgtgt ggccgcgaac ttccgagacc
    12601 cagtccgcga actcttcggc gcggcccacg gtcgccgaga gcaggagcat tcggacgcgc
    12661 gggggcgtga ggattatcgc ctcctcccag acgtggccgc gctcttcgtc cgagaggtag
    12721 tgcgcttcgt cgaggactac caggtcggcc tgaacctgct ggccgccgcg aagggcgtcg
    12781 aagagctggt tgcgatagac ctcggtcgtg ccgacgatga gaggggcgtc ggagcgctcc
    12841 ttgcggtcgc cggtgagtat gcctacgcgg ccctcgccga actcggccgt gaactcgtgg
    12901 ta
//
LOCUS       DASPKR010000458        13545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1879453, whole genome shotgun sequence.
ACCESSION   DASPKR010000458 DASPKR010000000
VERSION     DASPKR010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 13545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13545)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13545
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1879453"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(249..929)
                     /gene="cmk"
                     /locus_tag="VD968_12275"
     CDS             complement(249..929)
                     /gene="cmk"
                     /locus_tag="VD968_12275"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - cytidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HYE15213.1"
                     /translation="MKLIIAIDGPSGAGKSTLGRMLARELGLLYIDTGAMYRAVALAA
                     TRAGVPTTEPDAVAEVAREASIRLEGDPDSLRVWLDGRDVSTEIRGEGVGHTASVISA
                     IPAVRRELARQQRALGERAGRAVLDGRDIGTVVFPDADIKFFLTAVPEERARRRFDEM
                     HAHDQTFERTLADINARDRRDASREDSPLKIAEDAVVIDTTEFSIDEVFARMLEVVRE
                     RRQHPPRD"
     gene            complement(934..1983)
                     /locus_tag="VD968_12280"
     CDS             complement(934..1983)
                     /locus_tag="VD968_12280"
                     /inference="COORDINATES: protein motif:HMM:NF041359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntG family PLP-dependent aldolase"
                     /protein_id="HYE15214.1"
                     /translation="MNLIDLRSDTVTKPTPAMRRAMAEAEVGDDVYGEDPTVNRLQER
                     AAEVFGKEAALFVPTGSMGNQIAVKLHTRPGTEVVIEERGHIYNYEMAAMSAVSGALA
                     RPVRSGDGSGVLTWREVEAAIHANDAPYYVARTGLVALENSHNLAGGACMTRARTEEI
                     CDGAHALGVPVHLDGARVFNAAEALGETVAALSRPADSVMFCLSKGLGAPVGSVLLGG
                     RGFIEEARRWRKLLGGGMRQAGVLAAAGLVALEETPPRLAEDHANARRLAEGLAELPG
                     VRIDPERVQTNIVLFDVSETGIGADEICARLRAEHGVLATGFGPSVRMVTHYDVSRRD
                     IERALEGMREVVGSR"
     gene            complement(1986..3125)
                     /gene="hemW"
                     /locus_tag="VD968_12285"
     CDS             complement(1986..3125)
                     /gene="hemW"
                     /locus_tag="VD968_12285"
                     /inference="COORDINATES: protein motif:HMM:TIGR00539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HYE15215.1"
                     /translation="MSRAGIYLHVPFCRARCSYCDFATGAYDGELAERYVRALAREVR
                     SFGREGATDEVGTVYFGGGTPSLLTPAQVGAVLDAVASRFRVREGAEVTMEMNPGTMT
                     AEALREFRRLGVNRASFGAQTFDDEELRRLGRTHTAEDVRRTLSMLRDAGFDNVSLDL
                     IAGLPRQTLADWRRNLEEALRLRPEHLSLYLLEVHEGTPLAEQIRQGRYDAPDADLAA
                     EMYREMVERTARAGYEQYEISNFCLPGRESRHNLKYWTGAPYYGFGCSAHSFDGRASR
                     WSNERDARRYVTMIEDGGGAVVTSDHLGEREAGAEALFLGLRLLRRGVNLREHRERFR
                     QDVLEEHAEDLRRFGEAGLVELEGDTLRLTQAGALLSNEVFSAFV"
     gene            3516..3824
                     /locus_tag="VD968_12290"
     CDS             3516..3824
                     /locus_tag="VD968_12290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15216.1"
                     /translation="MADDMQGTGGGSGGGGSTGGGGGSTGGGGGTGGGSTGGGGTGGG
                     GGTGGGGTGGGGGTGGGGTGGGGTGGGGTSGGGGGGSTGGGGGSSSGGGGGSSSGGGQ
                     "
     gene            complement(3936..5267)
                     /locus_tag="VD968_12295"
     CDS             complement(3936..5267)
                     /locus_tag="VD968_12295"
                     /EC_number="3.4.13.19"
                     /inference="COORDINATES: protein motif:HMM:NF013413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HYE15217.1"
                     /translation="MAKLRLALAFTLTLSLLAPICARAQQAQAPAAQPQRDERLWKKA
                     LELHRKAVIVDGHNDITEIMVDTGYDLGTPSVGKYHTDLQRLIQGGVTGQFFSVYVDR
                     KYATQKHAAEEYLTRGGSARRALDLIDVIYRAAEKNPDRLMMAYSSADILRAKRQKKV
                     GALLGIEGGHAIENSLSVLRDFYRLGVRYMTLTHNNTNEWADACCDDARHNGLSDFGR
                     EVVREMNRLGMLVDVSHVSDKTMSDVLEVTKAPVIASHSSARRFSDHKRNIPDELLRR
                     IGQNGGVVMINFYPAFLDEKVRQAGLERDARLKPERDRINQQFKDDKERREAELKRLN
                     DANPLPNTTLSVLVDHIEHVAKVAGVDHVGLGSDFDGVPFLPEGVRDVADLPNITYEL
                     LRRGHSERDVLKILGGNLVRAFAEAERVARSQSRTVSGEGSTLKYEPAAKK"
     gene            complement(5362..6708)
                     /locus_tag="VD968_12300"
     CDS             complement(5362..6708)
                     /locus_tag="VD968_12300"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYE15218.1"
                     /translation="MTTRERELEELRESEARSRIAVETLADAVITIDESSRILSVNRA
                     AERIFGYTAREMLGAQMTMLMPEYLRRLHDAGMARYIETGVKHISWQGVELPGLHKSG
                     REVPLEVSFGEFALDGRRYFTGVARDITERKKGQRRLAAQYEVTRALAEAHDFAKAVP
                     GILRAVCEGLGWGLGALWRVDEGDALMRFVEAWHAPGVDAAEFEALSSRRVFERGEGL
                     PGRVWESGRPEWVEDLATDYNFPRSRAAERAGLRGAFAFPVTLGGRALGAMEFFAREA
                     RPPDEALLAMMSHVGSQIGQVMERHRAEAERARLREEVIRVQDELLAELSTPLIPINE
                     QIVVMPLVGAMDAKRALRMTTTLLTGLRERGAVVAIIDITGVSVVDTHVANTLIQAAQ
                     AARLLGTNLILTGIRAGVARSLVSLGLELRGVTTRKTLQDGIACAFELLRRRQAAY"
     gene            6838..8799
                     /gene="acs"
                     /locus_tag="VD968_12305"
     CDS             6838..8799
                     /gene="acs"
                     /locus_tag="VD968_12305"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF001208.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HYE15219.1"
                     /translation="MSSTTPNIESVLHEERVFPPPEPFSAAARVKSAEEYDALRREAA
                     ESPEAFWARMAETELHWFRKWDEVLRWEPPHAEWFVGGKINISYNCLDRHLGTWRRNK
                     AALIWEGEPGEQRTLTYAQLHREVSRFANVLKRAGVERGDRVALYMPLIPELAVAMLA
                     CARIGATHSVIFGGFSTNAIVDRVNDAGCKLVVTADGGWRRGQEVKLKPAVDEALKHT
                     PTVRACIVVRRTGSRVHMEMGRDYWWHELVESVPDECPAEELDSEHPLYILYTSGTTG
                     KPKGILHTTAGYALQTHLTTKWVFDLKDEDVYWCTADIGWVTGHSYVVYGPLSNGATV
                     LMYEGAPNHPEPDRFWSIIQRHRVNIFYTAPTAIRAFIKWGEHWPLRHDLSSLRLLGT
                     VGEPINPEAWMWYREIIGKGRCPIVDTWWQTETGAIMIAPLPGATPTKPGSATLPLPG
                     VDATVLTRQGQEVGADEGGYLVIRRPWPSMLRTIWNDDERYRRQYFGEIEGVYFAGDG
                     ARRDRDGYFWIMGRVDDVINVSGHRLGTMEVESALVSHEAVAEAAVVGRPDELKGQGI
                     VAFVTLEGERKTSDELKEELRRHVTKEIGALARPDEIRFTDALPKTRSGKIMRRLLRE
                     IASSGAVQGDTTTLEDFSVLEKLRAQEEE"
     gene            8867..9247
                     /locus_tag="VD968_12310"
     CDS             8867..9247
                     /locus_tag="VD968_12310"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HYE15220.1"
                     /translation="MTANFIEQRRGPRYLVSIPVRAEWDDEKSGEHVVVEGETENIGP
                     HGALVHLERLPEVGSRVQLIVPDAKGTRLETIVEVIRLERNPVQPLAALELLGESEEW
                     QGLVWEPAAELEREPNEGDEDYEH"
     gene            9456..10760
                     /locus_tag="VD968_12315"
     CDS             9456..10760
                     /locus_tag="VD968_12315"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HYE15221.1"
                     /translation="MAKKSSLQIHESEGAADAAAVELAEAKARPVVRIATRSLLWVVV
                     LGLSLHYLFEGVRWVFYALTGVLLVVVLAIFFAYLIAPLVELVRRPFRAFGHQLELPR
                     PLAIAIIYVFIFGSLTLCAWVLLPRLGNQMADLAKNTPDYLTSARARADSLNQVYRQL
                     NLPPGVSRYANEQVDKTLKDIGNYVTSEGFGSAVHFLGYLPWLILVPILAFFFLKDAD
                     SFRRSALQMIPQGRLRWRGDEFFQDVNSTLAAYIRAQLIACLLIGTVCTVGFVIIDVR
                     YALVLGVVAGVLEFIPLLGPLIVAILAGAVAGFDSVGKIAAVIIFLGVLRIVHDYMIY
                     PRIIGSGIHLHPLAVILAILSGHELAGVAGIFLAIPVIAVITVTYRHWLEHRGSSGLV
                     AELLKPAEQAAAPAPGDAEAAAEPPSLQPAQAPPAEAPEMTR"
     gene            10922..11329
                     /locus_tag="VD968_12320"
     CDS             10922..11329
                     /locus_tag="VD968_12320"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE15222.1"
                     /translation="MSRQKRRVLCAEPHEDTCRLLTELLAGQGHEVATAKTVAECLGL
                     VRGGPRFDLYMLDDHYIDGSAIELCRELRRATPDTPILFFSSLALQRDRDRARAAGAD
                     AYLTKPNDIFEIVQTVNSIFAHGRARGARPDAD"
     gene            11434..11805
                     /locus_tag="VD968_12325"
     CDS             11434..11805
                     /locus_tag="VD968_12325"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE15223.1"
                     /translation="MEGGKRRILCAESNKDVGELIALMLRRKGYEVESVQTAADCIKF
                     ALTDRFDLYILNDTYIDGDSLELCQQLRSIDPATPVLLFSLESSGFDRKRVVEAGPQV
                     YLSKTSDFVSLVQTIDRLLQS"
     gene            complement(11832..12935)
                     /gene="carA"
                     /locus_tag="VD968_12330"
     CDS             complement(11832..12935)
                     /gene="carA"
                     /locus_tag="VD968_12330"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012053752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HYE15224.1"
                     /translation="MNEEERKPALLVLEDGRAFRGRSWGAEGERCGEMVFNTSMSGYQ
                     EVLTDPSYAGQIVCMTYPLIGNYGVNRADEESARPWVEGFVVREASRTASNWRSEEPL
                     GDYLKRWGIVAIDRVDTRALVRHIRDKGAMRACLSTVDSDEKSLLGKARGSVPMENRE
                     LASAVTTPRPYEVAAEGRERFHVVCYDFGVKRNSLKELAALGCRVTVVPASTPAAEVL
                     AMRPDGVYLSNGPGDPASMTAVVEEIRRLVEGGVPTFGICFGHQLLGRAFGGKTYKLR
                     FGHRGGNQPVKDLKSGRVEITSHNHGFAVEAASLPEEVEVTHINLNDECVEGMRHRRL
                     PVISVQYHPEAAPGPHDAAHHFARFIELMEKRG"
     gene            complement(12949..>13545)
                     /locus_tag="VD968_12335"
     CDS             complement(12949..>13545)
                     /locus_tag="VD968_12335"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15225.1"
                     /translation="LLLVFMMRGYIGELMRGQRARAAFRQNLEAATLNPADASAHYNL
                     GLLHMQRSELTEARARFERAVEIDPSEADAHYQLGRIARSEGRLAEAIEHFGRAVALD
                     DAHAQHEIWREVGATYLAAGQFDDARDALRRFIDKRESDPEALYLMGRAHFGLGDTRG
                     AREWMQRCVEAVRTAPAYKYRADKRWLNEAQQFLRTLA"
BASE COUNT         2080 a         4608 c         4576 g         2281 t
ORIGIN      
        1 cgagcacgat accggcggcg agcccgccgc cgagcatctt tatcccggcc ggcgccacga
       61 ggagcgccgc cttcacggtg agcacgtcgg cggtggcggc gacgcaggca ggcatcatac
      121 gggccacgct ggggccgaag gcagtgagca ggagtttctc ggtcgcctcg ggcgcttgcc
      181 cttagaggcg cttcgcgcgg agtgtgcgcg cggtcggagc ggggacgccg gcgccctaag
      241 ctcggcctct agtcgcgggg ggggtgctgc cggcgctcgc gcaccacttc gagcatacgc
      301 gcgaagacct cgtctatcga gaactcggtc gtgtctatga cgacggcgtc ctcggcgatc
      361 ttcaggggcg agtcctcgcg cgaggcgtcg cggcggtcgc gcgcgtttat gtcggccagc
      421 gtgcgctcga aggtctggtc gtgcgcgtgc atctcgtcga agcgccgacg cgcccgctct
      481 tcggggacgg ccgtcaggaa gaacttaatg tcggcatcgg ggaagaccac cgttcctatg
      541 tcgcgcccgt cgaggacggc gcgcccggcg cgctcgccga gcgcgcgctg ctggcgcgcg
      601 agctccctcc ggacggccgg tattgccgag atgacggagg ccgtgtggcc cacgccctcg
      661 ccgcgaatct cggtggacac gtcgcgcccg tcgagccaca cgcgcagcga gtcggggtcg
      721 ccttcgagcc gtattgacgc ctcacgcgca acctccgcca ccgcgtcggg ctccgtggtc
      781 ggcacgcccg cgcgcgtcgc cgccagcgcc acggccctgt acatcgcccc cgtgtctatg
      841 tagagcagcc ccagctcgcg cgcgagcatc ctgcccagcg ttgacttccc cgcccccgaa
      901 ggcccgtcaa tggcgatgat tagtttcata tgactaacgg ctgccgacta cttccctcat
      961 cccttcaagg gcgcgctcga tgtcgcggcg cgaaacgtcg tagtgcgtga ccatcctgac
     1021 tgaagggccg aagcctgtgg cgagcacgcc gtgctcggcc cgaagccgcg cgcagatttc
     1081 gtcggccccg atgcccgtct cggaaacgtc gaagaggacg atgttggtct gcacgcgctc
     1141 cgggtcaatc ctcacgccgg gcagctcggc caggccctcg gcgagtctgc gcgcgttcgc
     1201 gtggtcttcg gcgagccgcg gcggcgtctc ttcgagcgcg acgagcccgg cggccgcgag
     1261 cacgccggcc tgccgcatgc ccccgcccag tagcttgcgc caccgtcggg cttcttcgat
     1321 gaagccgcgg ccgcccagaa gcacggagcc gacgggagcg cccaatccct tcgacaggca
     1381 gaacatgacg gagtcggcgg gccgagagag cgcggcgacc gtctcgccga gtgcctcggc
     1441 cgcgttgaac acgcgcgcgc cgtcgaggtg gactgggacg ccgagcgcgt gagcgccgtc
     1501 gcaaatctcc tcggttcgcg cgcgcgtcat gcacgcgccg cccgcgaggt tgtgcgaatt
     1561 ctcaagtgcc acgaggcccg tgcgcgcgac gtagtagggc gcgtcgttgg cgtgaatcgc
     1621 ggcctcgact tcgcgccacg ttaggacgcc ggagccgtcg ccgcttcgga cgggccgggc
     1681 gagcgcgccc gagaccgcgg acatcgcggc catctcgtag ttgtatatgt gaccgcgctc
     1741 ttcgatgacg acttcggtgc cgggccgcgt gtggagcttg acggctatct gattgcccat
     1801 cgagccggtc ggcacgaaga gcgcggcctc cttaccgaaa acctcggcgg cgcgctcctg
     1861 aaggcggttc acggtcgggt cttcgccgta aacgtcgtcg cccacctcgg cctcggccat
     1921 cgcccggcgc atcgcgggcg tgggcttcgt tacggtgtcg ctgcgaaggt ctatgagatt
     1981 catacttaga cgaaggcgga gaagacttcg ttcgagagca gggcgccggc ctgcgtgagc
     2041 cggagcgtgt cgccttcgag ctccacgagc ccggcctcgc cgaagcggcg gaggtcttcg
     2101 gcgtgctctt cgaggacgtc ttggcggaag cgctcgcggt gctcgcggag gttgacgccg
     2161 cgccggagca gtcgcaggcc gaggaagagc gcctcggcgc cggcctcgcg ctcgccgagg
     2221 tggtcactcg tgacgacggc gccgcccccg tcttcaatca tcgtgacgta gcggcgcgcg
     2281 tcgcgctcgt tcgaccagcg cgaggcgcgg ccgtcgaagg agtgggccga gcagccgaag
     2341 ccgtagtagg gcgcgcccgt ccagtatttc aggttgtgcc gtgactcccg gcccggcagg
     2401 cagaagtttg agatctcgta ctgctcgtag cccgcgcgcg ccgtgcgctc gaccatctcg
     2461 cggtacatct cggccgcgag gtcggcgtcg ggcgcgtcgt agcgcccctg ccgaatctgc
     2521 tccgcgagcg gcgtgccttc gtgtacttcg aggaggtata gagagaggtg ctcgggccgc
     2581 agccgcaggg cctcttcgag gtttcgtcgc cagtcggcga gcgtctggcg gggtagcccg
     2641 gcgatgaggt cgaggctcac gttgtcgaag ccggcgtcgc gaagcatcga gagcgtgcgg
     2701 cgcacgtcct cggccgtgtg cgtgcgcccg agccgtcgca gctcttcgtc gtcgaaggtc
     2761 tgcgcgccga agctcgcgcg gttgacgccg aggcgccgga actcccgcag ggcttccgcc
     2821 gtcatggtgc cggggttcat ctccatcgtg acctcggcgc cttcgcgaac gcggaagcgc
     2881 gatgcgaccg cgtcgagcac ggcgccgacc tgcgcgggcg tgagcaggga gggcgtgccg
     2941 ccgccgaaat agactgtccc cacttcgtcg gtcgcgcctt cgcgcccgaa cgagcgcacc
     3001 tcgcgggcga gcgcgcggac gtagcgctcg gccagctcgc cgtcgtaggc gccggtcgcg
     3061 aagtcgcagt aggagcagcg cgctcggcag aaggggacgt gcaggtagat tccggctcgg
     3121 ctcacggttt cggtgattat aacacgcgcg gacccggccg cttctctgtg tgcggcagcg
     3181 gactaagcgg gcgcgcgccg tgtatgcttt tgctcggcgc gtgtatgact ttaggggtaa
     3241 gcgcgtggta ccaatgtggc ttgagcccct tgctgtcaac acgttccggg cgcgccccgg
     3301 ccatgaaaag tgaaagactt taacttctac aacctgccgc ggcccgggcg tcggacgcgt
     3361 ggcatgtggg ttgtctttag ttttagcact tctcgcaacg caaaatacgg gtgggcgcct
     3421 ggggcggctc ttatcgtctc tactcgcttt cggggcgtcc ggcgttcatc ctcagactta
     3481 gacttcactg acaccgacgt tggaggaaaa ttcatatggc agacgacatg caaggcactg
     3541 gcggcggtag cggcggcggc ggttcgaccg gcggcggcgg tggcagcacc ggcggcggcg
     3601 gcggcaccgg cggcggctcg acgggtggcg gtggcactgg cggcggtggt ggcaccggtg
     3661 gcggtggcac cggcggcggt ggcggtactg gcggcggcgg caccggcggt ggaggcaccg
     3721 gcggcggcgg gacgagcggc ggcggtggcg gcggctcgac cggcggtggc ggtggttctt
     3781 cctccggcgg cggtggcggc agctcctcgg gcggcggcca gtaacgctcc agaagcttcg
     3841 gcccgcttaa gggtttaagc tcaagtgaag aagcgggcgg cggcgaggct cccaagtctc
     3901 gccgccgccc gctgttttcg tcgccgggag cgctcttact tcttcgcggc cggctcgtac
     3961 ttgagagtgc tgccctcgcc gctgacggtg cgcgactgcg agcgggccac gcgctcggcc
     4021 tcagcgaagg cgcgcaccaa attcccgcct agaatcttca acacgtcgcg ctccgagtgg
     4081 ccgcgccgca gaagctcgta ggtgatgttg ggcaggtcgg ccacgtcgcg cacgccctcg
     4141 ggcaggaaag gcacgccgtc gaagtcggaa ccgagcccga cgtgatccac gccggccacc
     4201 ttcgccacgt gctcgatgtg gtcaacgagc acggagagcg tcgtgttcgg cagggggttc
     4261 gcgtcgttca atctcttaag ctcggcctcg cgccgctcct tatcgtcctt gaactgttgg
     4321 ttgatgcggt cgcgctcggg cttgaggcgc gcgtcgcgct ccaggcccgc ctgccgaacc
     4381 ttctcgtcga ggaaggccgg gtagaagttg atcatgacga cgccgccgtt ctggcctatg
     4441 cgcctgagca gctcgtccgg gatgttgcgc ttgtggtcgg agaagcggcg cgcggaggag
     4501 tgcgacgcga tgacgggcgc cttcgtcact tcgagcacgt ccgacatcgt cttgtccgag
     4561 acgtgcgaca cgtcaacgag catccccaga cggttcatct cgcgcacgac ctcgcggccg
     4621 aagtcgctga gcccgttgtg gcgcgcgtcg tcgcagcagg cgtcggccca ctcgttcgtg
     4681 ttgttgtgcg tcagggtcat gtagcgcacg ccgaggcggt agaagtctcg cagcaccgag
     4741 agcgagttct caatggcgtg gccgccctcg atgccgagga gcgcgccgac tttcttctgc
     4801 cgcttagcgc gcaggatgtc ggcggacgag tatgccatca tcaagcggtc ggggttcttc
     4861 tcggccgcgc ggtagataac gtctatcaag tccagcgcgc gccgcgcgct cccgccccgc
     4921 gtcaggtact cctccgcggc gtgcttctgc gtcgcgtact tgcggtcaac atagacggag
     4981 aagaactgcc ccgtcacgcc gccctggatg agccgctgca agtccgtgtg gtacttgccg
     5041 actgaaggcg tgccgaggtc gtagcccgtg tcaaccatta tctccgtgat gtcgttgtgg
     5101 ccgtccacga tgacggcctt gcggtgaagc tccagagcct tcttccagag cctctcgtcg
     5161 cgctgcggct gcgcggccgg cgcctgtgcc tgctgcgcgc gggcgcatat gggggccagg
     5221 agcgagagcg taagcgtgaa ggcgagggcg agcctgagtt tagccattcc gttctgtttc
     5281 cttctcgggc gggtgattcg tggaaagagg tttaccacaa aggcgccggg gcgtgaaagc
     5341 gggctcaggg cgccggccgc gtcagtacgc cgcttgccgg cggcgcagca gttcgaaggc
     5401 gcatgcgatg ccgtcctgaa gggtctttcg ggtggtgacg cctcgcagtt cgaggccgag
     5461 gctgacgagg ctgcgcgcga cgccggcgcg tatgccggtg agtatcaggt tagtgccgag
     5521 caggcgggcg gcctgcgcgg cctgtatcag cgtgttcgcg acgtgcgtgt ccacgaccga
     5581 gactcccgtt atgtcaatga ttgcgacgac cgcgccgcgc tcgcgcaggc ccgtgagcag
     5641 cgtcgtcgtc atgcgcagcg ctcgcttggc gtccatagcg ccgactaagg gcatgacaac
     5701 gatctgctcg ttgatgggga tgagaggcgt ggagagctct gccagcaact cgtcctgcac
     5761 gcgtatcacc tcctcgcgta ggcgcgctcg ctcggcctct gcgcggtggc gctccatgac
     5821 ctggcctatc tggctgccga cgtgcgacat catcgcgagc agggcctcgt cgggcgggcg
     5881 cgcctccctc gcgaagaact ccatcgcgcc cagggcccgg ccgccgagcg tgacggggaa
     5941 ggcgaaggcg ccgcgcagcc cggccctctc ggccgcccgc gagcgcggga agttgtagtc
     6001 cgtcgccaga tcttctaccc actcgggccg tcccgactcc cacacgcggc cgggcagccc
     6061 ttcgccgcgc tcgaaaaccc tccggctcga aagcgcctcg aactccgcgg cgtcaacgcc
     6121 cggcgcgtgc cacgcctcca cgaagcgcat gagggcgtct ccctcgtcca cgcgccagag
     6181 cgcgcccagg ccccagccga gcccctcgca gacggcgcgc agaatgcccg ggacggcctt
     6241 ggcgaagtcg tgcgcttcgg cgagcgcccg cgtcacctca tactgcgcgg cgaggcggcg
     6301 ctgccccttc ttcctctccg tgatgtcgcg cgcgacgccc gtaaagtagc gccggccgtc
     6361 cagggcgaac tcgccgaagg agacttcgag cggcacctcg cgccccgact tgtgcaggcc
     6421 cggaagctcc acgccctgcc aagagatgtg cttgacgccc gtctcgatgt agcgggccat
     6481 gcccgcgtcg tggaggcggc gcaggtactc gggcatcagc atcgtcatct gcgcgccgag
     6541 catctcccgg gccgtgtagc cgaaaatcct ctcggccgcg cggttgacgg agaggatgcg
     6601 gctcgactcg tcaatcgtga tgacggcgtc ggccagcgtc tcgaccgcga tgcggctccg
     6661 cgcctcgctc tcgcgcagct cctcaagctc tctctccctt gtcgtcactc gcccatctta
     6721 ccagacgggc cggcccgcgc cctccccggc gcgtgcgctt gccgcgcggg gcgcatttct
     6781 ggtacacagg agcgcgcccg ccgaaacttt cccggaggag agagttttaa gccagcgatg
     6841 tcatcaacta cgcccaacat cgagtcggtg ctgcatgagg agcgcgtctt tccgccgccg
     6901 gagcccttct cggctgcggc gcgcgtcaag tccgcggagg agtacgatgc cctcaggcgc
     6961 gaggccgccg agtcgcccga agcgttctgg gcgcgcatgg cagagacgga gcttcactgg
     7021 ttcaggaagt gggacgaggt gctccgctgg gagccgccgc acgccgagtg gttcgtcggc
     7081 gggaagataa acatctccta caactgcctc gaccggcacc tcgggacatg gcggcgcaac
     7141 aaggccgcgc tcatctggga gggcgagccg ggcgagcaga ggactctaac ctacgcccag
     7201 cttcaccgtg aggtctcgcg cttcgcgaac gtcttgaagc gcgcaggggt ggagcgcggc
     7261 gaccgcgtcg cgctctacat gccgctcatc cccgagctcg ccgtcgccat gctcgcgtgc
     7321 gcgcgcatag gcgccacgca ctccgtcatc ttcggcggct tctcgacgaa cgccatcgtt
     7381 gaccgcgtca acgacgccgg ctgcaagctc gtagtgacgg ccgacggcgg ctggcggcgc
     7441 gggcaggagg tcaagctcaa gcccgccgtg gacgaggccc tcaagcacac tcccacggtg
     7501 cgcgcctgca tcgtcgtccg ccgcacgggg tcgcgcgtcc acatggagat ggggcgagac
     7561 tactggtggc acgagcttgt cgagtctgtc ccggacgaat gcccggccga ggaactcgac
     7621 agcgagcacc cgctctacat cctctacact tcggggacta ccggaaaacc caaaggcatc
     7681 ctgcacacca cggccggcta cgcgctgcaa acccacctga ccacgaagtg ggtcttcgac
     7741 ctcaaggacg aagacgttta ctggtgcacg gccgacatag gctgggtgac gggccattct
     7801 tacgtcgttt acgggccgct ctctaacggc gcgaccgtgc tgatgtacga gggcgcgccc
     7861 aaccacccgg agcccgaccg cttctggtca ataatccagc gccaccgcgt caacatcttc
     7921 tacacggcgc ccaccgccat acgcgccttc atcaagtggg gcgagcactg gccgctgcgc
     7981 cacgacctct caagccttcg cctgctcggc accgtcggcg agcctataaa cccggaggcg
     8041 tggatgtggt acagggagat aatcggcaag ggccgctgcc ccatcgtgga cacgtggtgg
     8101 cagaccgaga cgggcgccat aatgatagcg ccgctgccgg gggctacgcc gacgaagccc
     8161 ggctcggcga cgctccccct gcccggcgtt gacgccacgg tgctgacgag gcaggggcag
     8221 gaggtcgggg cagacgaggg cggctacctc gtcatcaggc gcccgtggcc ctcgatgctc
     8281 agaaccatct ggaatgatga cgagcgctac cgcaggcagt acttcggcga gatagagggc
     8341 gtctatttcg cgggcgacgg cgcgcggcgc gaccgcgacg gctacttctg gataatgggg
     8401 cgcgtggacg acgtgataaa cgtctcgggc caccgcctgg ggacgatgga ggtcgagagc
     8461 gcgctcgtct cgcacgaggc ggtcgccgag gccgcagtcg tcggccgccc cgacgagctt
     8521 aaaggccagg gcatcgtcgc cttcgtcacc ctcgaaggcg agcgcaagac gtcagacgag
     8581 cttaaagagg agctgcgccg gcacgtcacc aaagagatag gcgcgctcgc ccggcccgac
     8641 gagataaggt tcacggacgc gctccccaag acgcgctccg gcaagataat gcgccgtttg
     8701 ctgcgcgaga tagcttcgag cggcgccgtg cagggcgaca ccacgacgct cgaagacttc
     8761 tcggtcttag agaagctgcg cgcgcaggag gaggagtagc cggaagccgg gcgcttttcc
     8821 acgtttattc ccgtcaggcg aatcggttca gtcaaggagg cacggcatga ccgccaactt
     8881 catcgagcag cgtcggggcc cgcgttattt ggtctcgata cccgtgcgcg ccgagtggga
     8941 cgacgagaag tcgggcgagc acgtcgtggt cgagggcgag acggagaaca tcgggccgca
     9001 cggcgcgctc gtccacctcg agcggctgcc cgaggtgggc agccgcgtcc agctcatcgt
     9061 cccggacgcg aaggggacgc ggctcgaaac catcgtcgag gtcatacgcc tcgagcgcaa
     9121 ccccgtccag ccgctcgccg ccctcgaact gctcggcgag agcgaagagt ggcaggggct
     9181 cgtctgggag ccggcggccg agctcgagcg cgagcctaac gagggcgacg aggattacga
     9241 gcactaagcc cgagaagctt taacgcgggg agcgcggagg ccgcagagaa tttaagattt
     9301 tctctgcggc ctccgcgcct ctgcgccccc cgcgtttgaa cggccccggc gcaacccgcg
     9361 cgggcgcatt gttttcgcgc gcggagttgg tgcatcattg tcggcaagcc ccctttgaaa
     9421 cctcgctaga cttttttcgt ggcggagcgt gcgcgttggc gaagaagagc agcttgcaga
     9481 ttcatgagtc ggagggcgcg gcggacgccg cggcggtcga gctggccgag gcgaaggcgc
     9541 gcccagtcgt gcgcatagca acgcggtcgc tcctctgggt cgtagtcctc gggctctcgc
     9601 tccactacct cttcgagggc gtgcggtggg tcttctacgc gctgacgggc gtgctgctcg
     9661 tcgtcgtcct cgccatattc ttcgcctacc tgatagcgcc gctcgtcgag ctcgtgcgcc
     9721 ggccgttccg cgccttcggc caccaactgg aactgccgcg cccgctcgcc atagccatca
     9781 tctacgtctt catattcggc tcgctcacgc tgtgcgcgtg ggttctgctg ccgcggctcg
     9841 gcaaccagat ggccgacctc gcgaagaaca cgcccgatta cctgacgagc gcgcgcgcga
     9901 gggccgacag cctcaaccag gtttaccggc agctcaacct cccgccgggc gtaagccgat
     9961 acgccaacga gcaggttgac aagaccctta aggacatagg caactacgtc acgagcgagg
    10021 ggttcggcag cgccgtccac ttcctcggct acctgccgtg gctaatcctc gtccccatac
    10081 tcgccttctt cttcctcaag gacgcggaca gcttccgccg ctcggccctt cagatgatcc
    10141 cgcaggggcg cctgcgctgg cgcggcgacg agttctttca ggacgtgaac tcgacgctcg
    10201 ccgcctacat acgcgcgcag ctcatagcgt gcctgctaat cgggacggtc tgcacggtcg
    10261 gcttcgtcat catagacgtt cgctacgcgc tcgtgctcgg ggtcgtggcg ggcgtgctgg
    10321 aattcatacc gctgctcggg ccgctcatcg tcgccatact cgcgggcgcc gtcgcaggct
    10381 tcgactcggt cgggaagata gcggccgtca tcatcttcct cggcgtgctc cgcatcgtcc
    10441 acgactacat gatctacccg cgcatcatag gttcgggcat ccacctgcac ccgctcgccg
    10501 tcattctcgc aatcctctcc ggccacgagc tcgcgggcgt cgccggcata ttcctcgcca
    10561 tacccgtcat agccgtcatc acagtgacct accgccactg gctagagcac cgcggaagct
    10621 ccggcctcgt cgccgagctt ctgaagccgg ccgagcaggc tgcggcgccc gcgcccggcg
    10681 acgccgaggc cgccgccgag ccgccgtcct tacagcccgc gcaggcgccg cccgccgagg
    10741 cgcccgaaat gacacgttga ttattttcgc gaattagtgc ttaatagtaa gcgctcaagg
    10801 tcgcctcagc cgggcgcggc gcaatcatag tccgatgccg cacagacagg ccggccgccc
    10861 gcgtttatca tctgtcccct ttcaggctcc tgcctcgacg ccgactgtga ggagttcccc
    10921 catgtctcga cagaagcggc gcgtgctttg cgccgaaccc cacgaagaca cgtgccgtct
    10981 gctgacggaa ctgctcgcag ggcagggcca cgaggtcgcg acggccaaga ccgttgccga
    11041 gtgcctcggg ctcgtgcgcg gcggcccccg cttcgacctg tacatgctcg acgaccatta
    11101 catagacggc tcggccatcg agctgtgccg cgagctgcgg cgcgcgacgc ccgacacccc
    11161 catcctcttc ttctcgtcgc ttgcgctcca gcgcgaccgc gaccgcgcgc gcgcggccgg
    11221 cgccgacgcc tacctcacca agccgaacga catcttcgag atcgtgcaga ccgtcaactc
    11281 catattcgcg cacggccgcg cgcgcggcgc ccgccccgac gccgattagc ttgacgcttg
    11341 ccgcccgtgc ggctaaagtt agcctttccc ccctgtttag acgttcccct tcgagttgga
    11401 taaggcccca ggctctcaca cggagtgtct ctgatggaag gcggaaagcg gcgcatactc
    11461 tgcgccgagt ctaacaagga cgtgggcgaa ctgatcgccc tgatgctcag gcgcaagggt
    11521 tacgaagtcg agtcggtcca gaccgccgcc gactgcatca agttcgcgct aacagaccgc
    11581 ttcgacctct atatcctcaa cgacacatac attgatgggg acagcctgga gctttgccag
    11641 cagctccgct ccatagaccc ggccacgccc gtcctgctct tctcgctgga aagctccggg
    11701 ttcgaccgca aacgagtcgt cgaggccggc ccgcaggtct atctcagcaa gacctcggac
    11761 ttcgtctcgc tcgtgcagac gatagaccgc ctcctgcaat cgtaaattag cagtcgcccg
    11821 gcgcccggcg cctagcctct tttttccatc agctcgatga agcgggcgaa gtggtgcgcg
    11881 gcgtcgtgcg gccccggcgc ggcctcgggg tggtactgga cggagatgac gggcaggcgg
    11941 cggtggcgca tgccctcgac gcattcgtcg ttgaggttta tgtgcgtgac ctcgacctcc
    12001 tcgggcaggc tcgcggcctc aacggcgaag ccgtggttgt gtgaggttat ctcgacgcgg
    12061 ccgctcttta aatccttgac gggctggttg cccccgcggt ggccgaagcg cagcttgtag
    12121 gtcttacccc cgaaggcgcg ccccagaagc tggtggccga agcatatgcc gaaggtcggc
    12181 acgccgcctt cgactaagcg gcgtatttcc tcgacgaccg cggtcatcga ggccgggtcg
    12241 ccggggccgt tcgacagata gaccccgtcg ggccgcatcg cgagcacctc ggccgcggga
    12301 gtcgaggccg gaaccaccgt cacgcggcag ccgagcgccg ccagctcctt gagcgaattt
    12361 ctcttcacgc cgaagtcgta gcagacgacg tggaagcgct cgcgcccttc ggccgcgacc
    12421 tcgtagggcc gcggcgtagt aacggcgctc gccagctccc tgttctccat cggcacggag
    12481 ccgcgggcct tcccgagcag gctcttctcg tccgagtcaa cggtcgagag gcacgcgcgc
    12541 atcgcgccct tgtcgcgtat gtggcggacg agggcgcgcg tgtcaacgcg gtcaatggcg
    12601 actatgcccc atcgcttcag gtaatcgccg agtggctcct ccgagcgcca gttcgacgcc
    12661 gtccggctcg cctcgcgcac gacgaagccc tcgacccagg ggcgcgcgct ctcctcgtcg
    12721 gcgcggttca cgccgtagtt gccgatgagc gggtaggtca tgcagacgat ctgccccgcg
    12781 taggaggggt cggtcaagac ctcctggtag ccggacatag aggtgttgaa gaccatctcg
    12841 ccgcacctct cgccctcggc gccccacgag cgcccgcgaa acgcccgccc gtcctcgagc
    12901 acgagcagcg ccggttttct ctcttcttcg ttcatcttct tctcggcttc aggccagcgt
    12961 gcgcaggaac tgctgggcct cgttgagcca gcgcttgtcg gcgcggtact tgtaggccgg
    13021 ggcggtgcgc acggcctcga cgcagcgctg catccactcg cgcgcgccgc gcgtgtcgcc
    13081 gaggccgaag tgcgcgcgcc ccatgaggta gagcgcctcg gggtctgact cgcgcttgtc
    13141 tatgaagcgc cgcagcgcgt cgcgcgcgtc gtcgaactgg ccggcggcga ggtaagtggc
    13201 gccgacctcg cgccagattt cgtgctgggc gtgcgcgtcg tccagagcga cggcgcggcc
    13261 gaagtgctcg atggcctcgg cgagccggcc ctcggagcgc gcgatgcggc ctagctggta
    13321 gtgagcgtcg gcctcagacg ggtctatctc tacggcgcgc tcgaagcggg cgcgcgcctc
    13381 cgtgagctca ctgcgctgca tgtgcagaag gccgaggttg tagtgggccg aggcgtcggc
    13441 cgggttgagc gtagcggcct ccaggttctg cctgaaggct gcgcgcgccc tctgcccgcg
    13501 catcaactcg ccgatgtagc cgcgcatcat gaagacgagc agcag
//
LOCUS       DASPKR010000459         6760 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1492147, whole genome shotgun sequence.
ACCESSION   DASPKR010000459 DASPKR010000000
VERSION     DASPKR010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6760)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6760
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1492147"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(186..962)
                     /locus_tag="VD968_12340"
     CDS             complement(186..962)
                     /locus_tag="VD968_12340"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE15226.1"
                     /translation="MKTEDYEYLYRLEEDFWWFRGMREITAALLDPACLPAPPGGRRI
                     LDAGCGTGGMMTWLGRYAGEGGSVVGLDLIPTALDFCRERSHEYLVQASATDLPFADS
                     SFDLVTSFDVLVQIPGRGSDERAMREMFRVLRPGGTAFVRVAAYEWMRSGHDDALGTQ
                     RRYSLHVLAGRMKAAGFKITRATYANSFLLPLAAVRRLLLKRLGVADSGSDVKPLPPS
                     LARLNSLFTRALIAEARLLRAGRSLPAGLSAVCVAEKQKG"
     gene            complement(1045..2343)
                     /locus_tag="VD968_12345"
     CDS             complement(1045..2343)
                     /locus_tag="VD968_12345"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HYE15227.1"
                     /translation="MSFRGKFLLVVFSATLALYGVIGGWMSISAQQQQNDPGAQLRIF
                     ESVLRHIQDDYVDEPDLGKVRAGALRGLAYGLDPYSTYLTAQQVQDIRSGVAGNQVGI
                     GAELSQFASYLYVIAPVKGGPADQAGLQAGDIIEYIDNKATRDISLYDARQFLNGAPG
                     SEVKLRVLRAGTRPFVMTVRRGAVTVPGAEARMEAGKIGVIKVNSLAEGEAADVKARL
                     QELVKQGAQKVVLDLRSVAGGSLTEAVKVANLFIKEGALAQTVGRGGKVLKTYAADPK
                     EAIFDGHAVVIIDRGTAAAAEVVAAAFNERKRGEVVGVKSFGAGAEQQLFTLRNGDGL
                     LLTTVKWASSAGKPFLGGGVSPSVEVKAPELAEAIDPEELTGNDDDAIAQPQPNAPAD
                     RRDVAPEAASPKQQPEDVQLKKALEILREKDKPATQQRAA"
     gene            2521..2979
                     /gene="ruvX"
                     /locus_tag="VD968_12350"
     CDS             2521..2979
                     /gene="ruvX"
                     /locus_tag="VD968_12350"
                     /inference="COORDINATES: protein motif:HMM:NF015607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HYE15228.1"
                     /translation="MTKTDLQNEAPEASAPERGRALALDLGAKRVGVAVSDELGLTAR
                     PLPSIGRTSWKRLVLAVRELCEQFDVRRVVVGLPLRLDGGEGEAAQEARRAARNLGLT
                     LGLPVVLQDERLTSLDAEAGLRGAGAGREEVKARVDSEAAAIILRDYLGR"
     gene            2994..4085
                     /gene="mltG"
                     /locus_tag="VD968_12355"
     CDS             2994..4085
                     /gene="mltG"
                     /locus_tag="VD968_12355"
                     /inference="COORDINATES: protein motif:HMM:TIGR00247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HYE15229.1"
                     /translation="MLVTVLLLAVAAGGAAVWAYRAIRTPVEHSRSQEYLEIPRGSTP
                     DEIIGRLSNLGVIRNAALVRLYVRLTGAGPKMKAGEYRFPSPVSAVEVLQKLEEGEQR
                     LSRLTVVEGWTRWDIANMLARIPELRLASPQEALALMDDVSTIRDLDPAAANLEGYLF
                     PDTYSFPPDSDAKDVIAAMVKRFRKVWEEETAKLGGTAAGRTAREVVTVASLVETEAK
                     LAEERPLVASVIYNRLRLGMALGIDSSVIYASKLAGKWRNDGKVYLSDLERDSPYNTR
                     KVRGLPPGPIASPGASSIRAALAPADTRYLYYVREPSRNDGAHNFYESEAEFQRGVES
                     LRQWERSRNANAIVVQPTPDVSPPAPASP"
     gene            4210..4845
                     /locus_tag="VD968_12360"
     CDS             4210..4845
                     /locus_tag="VD968_12360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15230.1"
                     /translation="MKKALALVIMTLALSAAAAAQEKGVDQQNDRIRDGGNNRTPAVN
                     GGKTDTGIGRGMDFGKGRTVTPPPVPNPYRFQTPNDVLTKAVEELMRERKLILDDAVS
                     KPAEGVLISQPYTFTKGSVVSSSELNRLAEVPQTDFRNWTRGRYTIIVEVQPVDGTIT
                     NVSVNARIEGRTDNVLGAEWVTLVSNGTAEREFIIALVEKMTGAKPPGHDQ"
     gene            4872..5435
                     /locus_tag="VD968_12365"
     CDS             4872..5435
                     /locus_tag="VD968_12365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15231.1"
                     /translation="MLVSLKSSALVLSAALLFLSACQGSRPAAAPGEDSDAKPAPKVA
                     PSPEAQILRDEAVLKKPHAIIGGTVQNVGGERLEGLSVEIELKRRDGGDSEVREVVVE
                     PASLGPGEEGRYTLKVLSEEWGSFNVLRLRSAARPEEVAVKILPGAKRPPLEPPQPKV
                     VVTKQPRQKSKAGDDFINTPDTPISVP"
     gene            5534..6082
                     /locus_tag="VD968_12370"
     CDS             5534..6082
                     /locus_tag="VD968_12370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15232.1"
                     /translation="MLRALLVPVSLFMLAAPAAAQAQHPQPPAAADASLPKPPGQKQR
                     SPMLGSPEEEIISRAEIRHAEESYKEMVERADEAEALGAQIRSSFEKMQSLSREDLKK
                     LERMEKLARKIRGGAGGSDSEEGLKDPPSKLESAVSRLAELSGVLKRSVQKTSRLVIS
                     AAVIESSNEMIELIRHIRQIAR"
     gene            6079..>6760
                     /locus_tag="VD968_12375"
     CDS             6079..>6760
                     /locus_tag="VD968_12375"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE15233.1"
                     /translation="MRPAPEKTKRVGPARRASAALAALLLAAAALAAATPRQDEDEVV
                     RVDSELVVLNVTVKDKQGRYAHKLKRSDFQVFEDGKEQRLSLFSVQETPFAAAILLDT
                     SGSMEWRITLARAAAIRFLDGLRAEDVAAVYNFGSSVERLQDFSAGRDLPPMAYALRS
                     DGMTALYDSVLMAARDLAARPEKRRAIVVLSDGMDTKSGATLDKALNAALDAHATIYT
                     VDMSDPQAK"
BASE COUNT         1170 a         2313 c         2219 g         1058 t
ORIGIN      
        1 ctcgtacact accccttcct cctccaccaa cagccgctct tccgaagcga gcaccaacgg
       61 ctgctccccg tcgccgaagc cctcgcccgg gaaatcctct cgctcccgct ctacccgcaa
      121 atccgcgacg aagaggtgcg cgaggtcgcg gccgcgattc tcgactacaa gggctgagat
      181 ttcattcagc ccttctgctt ttcggctacg cagacggcgg agaggcccgc gggcaagctc
      241 cggcccgcgc ggagcagtcg cgcttcggcg atgagagcgc gcgtaaagag actgttgagc
      301 cgcgcgagcg acggcggcaa gggcttcacg tccgagcccg agtcggccac gccgagccgc
      361 ttgagaagca gtcgcctcac cgccgcgagc ggcaggagga aggagttcgc gtaggtcgcc
      421 cgcgtgattt taaatcccgc ggctttcatc ctccctgcga gcacatgcag gctgtaccgg
      481 cgctgcgtgc cgagcgcatc gtcatggccg ctccgcatcc actcgtacgc ggcgacgcgc
      541 acgaaggccg tgccgcccgg ccgcaacacc ctgaacatct cgcgcatcgc gcgctcgtcc
      601 gagccccggc ccggaatctg cacgagcacg tcgaagctgg tcacgaggtc gaatgaagaa
      661 tcggcgaagg gcaggtctgt cgccgaagcc tgcacgagat attcgtggct gcgctcgcgg
      721 cagaagtcga gggccgtggg tatcaggtcg agcccgacga cgctcccgcc ctcgccagcg
      781 tagcgcccga gccatgtcat catcccgccc gtcccgcatc cggcgtctaa aatcctcctc
      841 cctccgggcg gcgcgggaag gcaggcgggg tcgagcagcg ccgccgttat ctcgcgcatg
      901 ccgcggaacc accagaaatc ctcttcgagc ctgtagaggt actcgtaatc ttccgtcttc
      961 atccggcgac ttacctctga cacgaaagaa gcccgcgagc gtcgagactc gcgggctccc
     1021 ctctgaacaa gcgtgcggga gggatcaggc ggcgcgctgc tgcgtcgccg gcttgtcctt
     1081 ctccctcaga atctcgagcg ccttcttgag ctgcacgtcc tcgggctgct gcttggggct
     1141 cgccgcctcg ggcgcaacgt cgcggcggtc ggccggcgcg ttcggctgcg gctgcgctat
     1201 ggcgtcgtcg tcgttgccgg tcagctcttc ggggtcaatg gcctcggcca gctcgggggc
     1261 tttgacctcg accgagggcg agacgccgcc gccgaggaag ggcttgccgg ccgacgatgc
     1321 ccacttgacg gttgtgagca gcaggccgtc gccgttccga agcgtgaaga gctgctgctc
     1381 ggcccccgcg ccgaagctct tgacgcccac gacctcgccg cgcttgcgct cgttgaaggc
     1441 cgcggcgacg acctcggccg cggccgcggt gccgcggtca atgatgacga cggcgtggcc
     1501 atcaaatatc gcctccttcg ggtcggccgc ataggtcttg agaaccttgc cgccacgccc
     1561 gacggtctgc gcgagcgcgc cttcttttat gaagaggttc gcgaccttga cggcctcggt
     1621 gagcgagccg cccgcgacgc tcctcaagtc gagcacgacc ttctgcgcgc cctgcttcac
     1681 aagctcctgg agtcgcgcct taacgtcggc cgcctcgccc tccgctaggc tgttgacctt
     1741 gatgacgccg atcttgccgg cctccatgcg cgcctcggcg ccggggacgg tgacggcgcc
     1801 gcgccgcacc gtcatcacga aggggcgggt gccggcgcgc agcacgcgga gcttgacctc
     1861 gctgccgggc gcgccgttca gaaactggcg ggcgtcgtag agcgatatgt cgcgcgtggc
     1921 cttgttgtct atgtactcga taatgtcgcc ggcctgaagg cccgcctggt cggccgggcc
     1981 gcctttgacg ggcgcgatga cgtagaggta ggaggcgaac tgcgaaagct cggcgccgat
     2041 gcctacctgg ttgccggcga cgccggagcg tatgtcctga acctgctgcg cggtcaggta
     2101 ggtcgagtag gggtcgaggc cgtaggcaag gccgcgaagg gcgcccgcgc gaaccttgcc
     2161 gaggtcgggc tcgtcaacgt agtcgtcctg tatgtggcgc aggacgctct cgaatatgcg
     2221 gagctgcgcg ccggggtcgt tctgctgctg ctgcgcgctt atggacatcc agccgccgat
     2281 gacgccgtag agcgcgagcg tggccgagaa gactacgaga aggaatttac cgcgaaagga
     2341 catctaagta cctcaaaagc tttctgccat ccgtttgtgc gagagcggcc gtcgctgacc
     2401 cgcaagtgcg gccggacgag ggcgatgata cagcaccgct tccgggcggc gcaagccgcc
     2461 taagtggcgc aggcggcgtg ggttgcgtta tactccgccg catccccgga accttttgaa
     2521 ttgacgaaaa ccgaccttca aaacgaagcg ccggaagcgt cggcgcccga acgggggcgc
     2581 gcgctcgcgc tcgacctcgg cgccaagcgc gttggggtcg ccgtctccga cgagcttgga
     2641 ctgacagccc gcccgctgcc ctccatcggg cgcacgagct ggaagcggct ggttttagcc
     2701 gtccgggaac tgtgcgaaca gtttgacgtg cggagggtgg tcgtgggttt gccgctcagg
     2761 ctcgacgggg gcgagggtga ggccgcgcag gaggcgcgcc gcgcggcgcg aaacctcggc
     2821 cttacgctcg gcctccccgt cgtgcttcag gacgagcggc tgacttcact cgacgccgaa
     2881 gccgggctgc gcggggcggg ggcgggccgt gaagaggtga aggcccgcgt tgacagcgag
     2941 gccgccgcta taattctcag ggactacctc ggcagatgaa gctcgcgcgg ataatgctcg
     3001 taaccgttct cttgctcgcc gtcgcggcgg gcggcgcggc cgtctgggct taccgggcga
     3061 ttcgcacgcc cgtcgagcac tcccgttcgc aggagtatct cgaaatcccg cgcggctcga
     3121 ccccggacga gatcataggg aggctcagca acctcggcgt catccgtaac gccgcgctcg
     3181 tgcggctcta cgtgcgactg acgggcgccg ggccgaagat gaaggccggc gagtaccgtt
     3241 tcccctcccc ggtctcggcc gttgaggtgc tgcaaaagct ggaggagggc gagcagcgcc
     3301 tgagccgcct gacggtcgtc gagggatgga cgcgctggga catcgccaac atgctggcac
     3361 gcatccccga gcttcggctc gccagccccc aagaggcgct tgcgctgatg gacgacgtca
     3421 gcaccatacg tgaccttgac cccgctgccg cgaacctcga aggctatctc ttccccgaca
     3481 cgtacagctt cccgcccgac tccgacgcga aggacgttat cgccgcgatg gtgaagcgct
     3541 tccgaaaagt ctgggaggag gagaccgcga agctcggcgg cacagcggcc ggccgaaccg
     3601 cgcgcgaggt cgtcacagtc gcctcgctcg tcgagacgga ggcgaagctg gccgaggaac
     3661 gcccgctcgt cgcttcggtg atttacaacc gcctgcgcct cgggatggcg ctcggcatag
     3721 actcgtccgt catctacgcc tcgaagctcg ccggcaagtg gaggaacgac gggaaggtct
     3781 atttgagcga cctcgagcgc gactcgccct ataacacgcg taaagtccgg gggctcccgc
     3841 ccggccccat cgcatcgccc ggagctagct ccatccgggc cgcgctcgcg cctgccgaca
     3901 cacgctacct ctactacgtg cgcgagccct cgcggaacga cggcgcgcat aacttctacg
     3961 aaagcgaggc ggagttccaa cgcggcgtcg agtccctccg ccagtgggag cgctcgcgca
     4021 acgccaacgc gatagtcgtt cagcccacgc ccgacgtgtc acctcccgcg cccgcctcgc
     4081 cctaaaacgc gcgcgcgtca agtctcccgc cggagtcact tcttgaattc gcaaacacgt
     4141 tgctttatgc tcgcagtcgt tcccccaaac gctctcgggc ggcggcgttc gctacaaaag
     4201 gggtgggtga tgaaaaaagc tctggcgctt gtgattatga ctctcgcgct ctcggccgcg
     4261 gccgcggcgc aggagaaggg cgttgaccag caaaacgacc gcatacgtga cggcggcaac
     4321 aaccgcacgc ccgcggtcaa cggcgggaaa accgacacgg gtatcggccg cgggatggac
     4381 ttcggcaagg gccgcaccgt cactccgccg cccgtgccga acccctaccg cttccagacg
     4441 ccgaacgacg tgctcacgaa agccgtcgag gagctgatgc gggagcgcaa gctcatcctg
     4501 gacgatgccg tatcgaagcc cgccgagggc gtgctcatct cgcagcccta cacgttcacg
     4561 aaaggctcgg tcgtcagctc atccgagctt aaccggctgg ccgaagtgcc gcagaccgat
     4621 ttccgcaact ggacgcgcgg gcgctacacg ataatcgtcg aggtgcagcc ggtggacggc
     4681 accatcacga acgtctcagt caatgcgcgc atcgaaggca ggacggacaa cgtgctcggc
     4741 gccgagtggg tgacgctcgt gagcaacggg acggccgagc gcgagttcat catcgccctc
     4801 gtagagaaga tgacgggcgc gaagccgccc ggccacgacc agtaaaacgg gccacgggga
     4861 atctgttttt gatgcttgtc tctttgaaat cgtcggcgct tgtcctgtcc gccgcgctcc
     4921 tctttctctc cgcctgccag ggctcgcgcc ctgcggcggc gcccggcgag gattccgatg
     4981 cgaagccggc cccaaaagtc gccccctcgc ccgaggccca gattctccgc gacgaggcgg
     5041 tgctgaaaaa gccgcacgcc ataatcggcg ggactgtcca gaacgttggc ggggagaggc
     5101 tggaagggct ctcggtcgag attgaactga agaggcgcga tggaggcgat tcggaagtcc
     5161 gcgaggtagt ggtcgaaccc gcgagcctcg gccccggcga ggaggggcgc tacactctga
     5221 aggttctctc cgaggagtgg ggctcgttca acgtgctacg gcttcggagc gccgcgcggc
     5281 cggaggaggt cgcggtcaaa atcctcccag gcgcgaagcg gcccccgctc gagccgccgc
     5341 agccgaaggt agtggtcaca aagcagccga ggcagaagtc gaaggcaggc gacgacttca
     5401 tcaacacgcc cgacacaccg ataagcgtcc cctgaccggg ccgcgggaca acccgccgcg
     5461 gccgcgcggg cgtcagagtt tcggttccgt ctgaaagtca gagaaagcgc gcgaggcagt
     5521 cgaggtagcc ttcatgctga gagccctgct cgttcccgtc agcctattca tgctcgccgc
     5581 gccggccgcg gcgcaggctc agcatccgca gccgccggcc gcggccgacg cctctctgcc
     5641 gaagccgccg ggccagaagc agcggtcgcc catgttaggc tcgcccgaag aggagataat
     5701 cagccgcgcc gaaatccgac acgccgaaga gtcgtacaag gaaatggtcg agcgcgccga
     5761 cgaggcggag gcgctcggcg cgcagattcg ctcctccttc gagaagatgc agtcgctcag
     5821 ccgcgaggac ttgaagaagc ttgagcgtat ggagaagctc gcgcggaaga ttcgcggcgg
     5881 cgcgggtggc tccgactcgg aggaggggtt gaaagacccg ccgtcgaagc tcgaatcggc
     5941 ggtctcccgc ctcgcggagc tttcgggcgt cctcaagagg agcgtgcaga aaacctcccg
     6001 cctcgtcatc tcggccgccg tcattgagag ctcgaacgag atgatcgagc tcatacgcca
     6061 catacgccag atagcccgat gaggcccgcc cccgaaaaga cgaagcgcgt cggccccgcg
     6121 cgccgagcct cggcagcgct cgccgcgcta ctgctcgccg ccgccgcgct cgcggccgcg
     6181 acgccccggc aggacgagga cgaagtagtc cgcgttgact cagagctagt cgtcctcaac
     6241 gtcaccgtca aagacaaaca ggggcgctac gcccacaagc tcaagcgctc ggactttcag
     6301 gtcttcgagg acggcaagga gcagcgcctc agcctcttct ccgtccagga gaccccgttc
     6361 gccgcggcca tcctgctgga cacctccggc agcatggagt ggcgcatcac gctcgcgcgc
     6421 gccgccgcaa ttcgcttcct cgacgggctg cgcgccgaag acgttgccgc cgtctataac
     6481 ttcggcagct ccgtcgagag gcttcaggac ttctccgccg gccgcgacct ccccccgatg
     6541 gcctacgcgc tcaggtcaga cggcatgacg gcgctctacg actctgtgct tatggccgcg
     6601 cgcgacctcg ccgcgcgccc cgagaagcgg cgagcaatcg tcgtgctctc cgacggcatg
     6661 gacaccaaga gcggcgcgac gctcgacaag gctctgaacg ccgccctcga cgcgcacgcc
     6721 accatctaca ccgttgacat gtccgacccg caggccaagg
//
LOCUS       DASPKR010000460         4577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1620180, whole genome shotgun sequence.
ACCESSION   DASPKR010000460 DASPKR010000000
VERSION     DASPKR010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4577)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4577
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1620180"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..227)
                     /locus_tag="VD968_12380"
     CDS             complement(<1..227)
                     /locus_tag="VD968_12380"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15234.1"
                     /translation="MRALDLVIIFGYLVGITLFGVWFSRKQETTRDYFLGDRTVPWWA
                     IAASIVATETSTITFISVPGTAFARGGNFQFL"
     gene            complement(259..993)
                     /locus_tag="VD968_12385"
     CDS             complement(259..993)
                     /locus_tag="VD968_12385"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HYE15235.1"
                     /translation="MLHPSLEGARACVFDAGGTLVHPDWPRLGALAADEAGRELAPAE
                     LERALKEVLRAVAEEMQREGWAIPEDQKLPHWTFRRMYCSLGLSDEACGRVIERLGAS
                     HIERHLWCGTDPEAAGVIAELKRRGLLVGVISNTEDGRAADSLEAAGLLEEFDVVIDS
                     RLVGVRKPDPAIFRLALERLGVGPAEAAFVGDSYAHDALAARAAGMRAVLLDPLGLHP
                     ESVCPRIKRLGELINQESEVRIRETE"
     gene            complement(1005..1913)
                     /gene="murQ"
                     /locus_tag="VD968_12390"
     CDS             complement(1005..1913)
                     /gene="murQ"
                     /locus_tag="VD968_12390"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: protein motif:HMM:NF003915.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016835 - carbon-oxygen lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HYE15236.1"
                     /translation="MSQPEIPVTEQENPRTRGIGSLPAVEIARLMNEEDARVAGAVGR
                     VLDDVARAVEGIVKRLRAGGRLFYVGTGTSGRLGVLDASECPPTFGVPPELVQGVIAG
                     GYDALHRATEASEDDRGAGGRDLDARGVTGGDAVVGIAASGRTPYTLGAVEHARSLGA
                     FTACVTCVPGSPITGAVEVAIVPVVGPEVIAGSTRLKAGTAQKMVLNMISTATMIRLG
                     YVTGNRMTNLLPRNEKLRQRSLRIFAAETGAGEEEARAAIERADGDLRLALVMHKAGA
                     PREEAERALLDSRGVVARAVEALRKK"
     gene            complement(1936..2922)
                     /locus_tag="VD968_12395"
     CDS             complement(1936..2922)
                     /locus_tag="VD968_12395"
                     /inference="COORDINATES: protein motif:HMM:NF013986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BadF/BadG/BcrA/BcrD ATPase family protein"
                     /protein_id="HYE15237.1"
                     /translation="MSIRRETVKLRAAAPPGARPLTLGVDGGGSKTRAVVADARGRVL
                     GEGEAGPSNPLRVGISEAANSVREATERACTAAGVRRRELSAAEFGLAGVRREDLRAA
                     MTAALTDLEIKTIEVVTDADIALYGATGGKAGLIIIAGTGSICCGINSRGRRACAGGW
                     GPVAGDEGSGSWIARRALQSVAKSTDGRGRKTSLVEAACDYFNVGRAEDLSTAVYAPS
                     MTNNRIAGFGRNVIDAARRRDSVAREIVEEAGRELALAASAVVRKLRMERERFPVGYY
                     GGVFAAGELILESLREGLAEAAPKALLAPPALPPAEAAARMASEHVRLARAS"
     gene            3047..4015
                     /locus_tag="VD968_12400"
     CDS             3047..4015
                     /locus_tag="VD968_12400"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYE15238.1"
                     /translation="MEIRQLRAFVAIAETRTFTSAARRVHYTQAAISMQIKQLEKEVG
                     SPLFVRMPRRVVLTEAGERLLERAQVILREHDSALAELAELAGAGRGRLRIGSASAMV
                     SADPLPSILKKLKKAHPRAEVSVSSGTSEGLVKKILAGELDMAFVSLPVEARNVETQV
                     LSRDQLVAIASPRHPLAGQRVISAFALASERLILGECGGNTRRLIDEFFAEAGVKPTV
                     AMELSRQAAIKNMVAAGMGVGIVPLSTAREDVERGRLVRWWIEGARINWELGVARLSG
                     GYLSPVCQDFLELCRQHFAAEEAETPAAQKPAKKRARGKAKKAKAR"
     gene            complement(4088..>4577)
                     /locus_tag="VD968_12405"
     CDS             complement(4088..>4577)
                     /locus_tag="VD968_12405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HAD hydrolase family protein"
                     /protein_id="HYE15239.1"
                     /translation="LLLMDCDGVLTDGRITLLDGGDEQKSFHTRDGHGLVLLHRAGLR
                     TAIITGRTSRAVEWRARDLGVTHVLQGRLKKTEAFEELLAGSDLRPDEMACMGDDVTD
                     IPLMRRCALGIAVADASADTLAAADYVTRLPGGFGAVREVCELILKAQGRWDELMKRY
                     LA"
BASE COUNT          688 a         1600 c         1603 g          686 t
ORIGIN      
        1 aggaactgga agttgccgcc gcgcgcgaag gccgtgccgg ggacgctgat gaacgtgatg
       61 gtcgaggtct ccgtggcgac aatcgaggcg gcgatggccc accacggcac cgtgcggtcg
      121 ccgaggaagt agtcgcgcgt cgtctcctgc ttgcgcgaga accacacgcc gaacagcgtt
      181 atgccgacga ggtaaccgaa gatgatgaca aggtcaaggg cgcgcatcgc ctgaaagcga
      241 gtcggggtgt tacggctttt attctgtctc ccgaattctg acttctgact cctgatttat
      301 caactcgccg agcctcttta tccgcgggca gacgctttcg gggtgcaggc cgagtgggtc
      361 gagcaggacg gcgcgcatgc cggcggcgcg cgcagcgagc gcgtcgtgcg cgtaggagtc
      421 gccgacgaag gctgcctccg ccggcccgac tccgagtcgt tcgagcgcga ggcggaagat
      481 ggccgggtcg ggcttccgca cgccgacgag gcgcgagtca attaccacgt cgaactcttc
      541 gaggagcccc gcggcctcga gcgagtctgc ggcgcgcccg tcctccgtgt tcgagatgac
      601 gccgacgagc aggccccgcc gcttcagctc cgcgatcacg ccggccgcct cggggtcggt
      661 gccgcaccag aggtggcgct cgatgtgcga ggcgccgagc ctttctatga cgcgcccgca
      721 cgcctcgtcg ctcagcccga gcgagcagta catgcgtcgg aaagtccagt gcgggagctt
      781 ctggtcttcg ggaatcgccc agccctcgcg ctgcatctcc tcggccaccg cgcgcagcac
      841 ctccttgagc gcgcgctcga gctccgcggg ggcgagctcg cgccccgcct cgtcggccgc
      901 gagcgcgccg agccggggcc agtccgggtg aaccagcgtc ccgccggcgt cgaagacgca
      961 agcccgcgcg ccctctaaag aaggatgaag cataagggag ttgactattt cttccgcagc
     1021 gcctcgactg cgcgggcgac gacgccgcgg gagtctagga gggcgcgctc ggcctcttcg
     1081 cgcggcgcgc ccgccttgtg catgacgagc gcgaggcgca ggtcgccgtc ggcgcgctca
     1141 atggccgctc gcgcctcctc ctcgcccgcg cccgtctcgg ccgcgaatat gcgcagcgag
     1201 cgctgacgga gtttctcgtt gcgcggcagc aggttcgtca tgcggttgcc tgtgacgtag
     1261 ccgagccgga tcatcgtcgc cgtcgagatc atgttcaaga ccatcttctg cgccgtcccg
     1321 gccttgagcc gggtcgagcc tgcgatgacc tccggcccca cgacaggcac tatcgccacc
     1381 tcaaccgcgc ccgtgatggg ggagcccggc acgcacgtca cgcaggccgt gaaagccccg
     1441 agcgaccgcg cgtgctcgac tgccccgagc gtgtagggcg tgcgccccga cgctgcgatg
     1501 ccgacgacgg cgtcgccgcc cgtcacgccg cgcgcgtcga ggtcgcgccc ccctgccccg
     1561 cggtcgtcct ccgaggcttc ggtagcgcgg tgcagcgcgt cgtagccgcc cgcgatgacg
     1621 ccctgcacaa gctccggcgg cacgccgaag gtcggcgggc attccgaggc gtcgagcact
     1681 ccgagccgcc ccgaagtccc cgtgccgacg tagaagaggc ggccgcccgc gcgcaggcgc
     1741 ttcacgatgc cttcgaccgc gcgcgcaacg tcgtcgagca cgcgccccac tgcgccggcc
     1801 acgcgcgcgt cctcctcgtt catcagccgc gcaatctcga cggcgggcag cgaccctatc
     1861 ccgcgcgtgc gcgggttctc ctgctcggtg acggggattt cgggttgact caaggcgccg
     1921 cgacccccca agcgtctagc tcgcgcgcgc gagtcgcacg tgctcgctgg ccatgcgcgc
     1981 ggctgcctcg gcgggcggga gcgcgggcgg tgcgagcaga gctttgggcg ccgcttccgc
     2041 cagcccctcg cgcagcgatt ccagtatgag ctcgcccgcc gcgaacacgc cgccgtagta
     2101 gccgacgggg aaccgctcgc gctccatccg tagcttgcgg acgacggccg aggccgcgag
     2161 cgcgagctcg cgccccgcct cctcgacaat ctcgcgggcc accgagtcgc gccgcctcgc
     2221 tgcgtctatt acgttgcggc cgaagccggc tatgcggttg ttcgtcatgc tcggcgcata
     2281 gacggccgtc gagaggtctt cggccctgcc gacgttgaag tagtcgcacg cggcctcgac
     2341 gagggaagtc ttccgcccgc gcccgtccgt ggattttgcg accgactgaa gcgcgcgcct
     2401 cgctatccac gagccgctcc cctcgtcgcc cgccacgggc ccccagccgc ccgcgcacgc
     2461 gcggcgcccg cgcgagttta tgccgcagca gatcgagccc gtgccggcga tgattatgag
     2521 gcccgccttg ccgcccgtcg cgccgtagag cgcgatgtcg gcgtcggtga cgacctcgat
     2581 tgtcttgatt tccaggtcgg tgagcgcggc cgtcatcgcc gcgcgcaggt cttcgcgcct
     2641 aacgccggcc aggccgaact cggcggcgga aagctcccgg cggcggacgc ccgccgccgt
     2701 gcaggcccgc tccgtagcct cgcgcacgga gttggcggcc tcgcttatgc cgacgcgaag
     2761 agggttggaa ggccccgcct cgccctcgcc gagcacgcgg ccccgggcgt ccgcgacgac
     2821 ggcgcgcgtc ttcgagccgc cgccgtccac gccgagcgtg agcggccgcg cgccgggcgg
     2881 cgctgcggcg cgcagcttga ctgtctctcg cctgatgctc atcgggggcg gcgcgcccgt
     2941 gcggcgcggt aaaaataggg gtgcaattgt agcgggcgtg tgagtataat caaaactaaa
     3001 agattttatt tctgcaataa ccaacactga tgtggagtct taaccgatgg agatacgcca
     3061 actgagggcc ttcgtcgcca tagccgagac gcgcacgttc acgagcgcgg cgcggcgcgt
     3121 gcactacacg caggcggcga taagcatgca gataaagcag ctagagaagg aggtaggctc
     3181 gccgctcttc gtcaggatgc cgcgccgcgt ggttctgacc gaggcgggcg agcgcctgct
     3241 cgagcgcgcg caggtcatcc tgcgcgaaca cgactcggcg ctggcggagc tggcggagct
     3301 tgccggggcg ggccgcggcc ggctcagaat tgggagcgcc tcagcgatgg tgagcgcaga
     3361 cccgctcccc agcatcctga agaagctgaa gaaggcacac ccgcgcgccg aggtttccgt
     3421 ctcctcgggg acgagcgagg gcctcgtgaa gaagattctg gcgggcgagc tcgacatggc
     3481 gttcgtctcg ctgcccgtcg aggcgcgcaa cgtcgagacg caggtcttga gccgcgacca
     3541 gctagtggcg atcgcctcgc cgcgacaccc gctcgccggg cagcgcgtca tcagcgcgtt
     3601 cgccctcgcg agcgagcggc ttatcctggg cgagtgcggc ggcaataccc gcaggctcat
     3661 tgacgagttc ttcgcggagg ccggcgtaaa gccgacggtc gcgatggagc tgagtcggca
     3721 ggccgcgatc aagaacatgg tagcggccgg gatgggcgtg ggcatcgtgc cgctcagcac
     3781 ggcgcgcgag gacgtggagc gcgggcgcct cgtgcgctgg tggatagagg gcgcgcgcat
     3841 caactgggag ctgggcgtgg cgcgattgag cggcggctac ctctcgcccg tctgccagga
     3901 cttcctagag ctttgccgcc agcacttcgc ggccgaagag gccgaaacgc ccgcggctca
     3961 gaagcccgcg aagaagcggg ccagaggcaa ggccaaaaag gcgaaggccc gttgaaggcc
     4021 gaagggccgg cgcgggaagg aggacgggag gcgcgccgct ataaagtcgt cattcgcgcg
     4081 cctgctctca ggcaagatag cgcttcatca gctcgtccca gcggccttgc gccttgagga
     4141 taagctcgca gacttcgcgc acggcgccga agccgccggg cagccgcgtg acgtagtcgg
     4201 ccgcggccag cgtgtcggcg ctcgcgtcgg cgacggctat gccgagcgcg cagcggcgca
     4261 tgagcgggat gtcggtcacg tcgtcgccca tgcaggccat ctcgtcgggc cggaggtcgg
     4321 atcccgccag cagctcctcg aaggcttccg tctttttcag cctcccctgc agaacgtgtg
     4381 tgacgccgag gtcgcgcgcc ctccactcga ccgcgcgcga ggtgcgcccc gtgatgatag
     4441 ccgtccgcag gcccgcgcgg tgcagcagca cgaggccgtg gccgtcgcgc gtgtggaagc
     4501 tcttctgctc gtcgccgccg tcgaggagcg tgatgcggcc gtccgtgagg acgccgtcac
     4561 agtccatcag cagaagc
//
LOCUS       DASPKR010000461         2012 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1103067, whole genome shotgun sequence.
ACCESSION   DASPKR010000461 DASPKR010000000
VERSION     DASPKR010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2012)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1103067"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..338
                     /locus_tag="VD968_12410"
     CDS             69..338
                     /locus_tag="VD968_12410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15240.1"
                     /translation="MPARNQNGASTTALAFVTYALVPYLGILFCPGALLLGAVGLVRS
                     YRSPHAGGRRASALGVVLGLLVLTAQLVLWWVLYKMPEWSRQAMF"
     gene            453..1061
                     /locus_tag="VD968_12415"
     CDS             453..1061
                     /locus_tag="VD968_12415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15241.1"
                     /translation="MTRIAKIVKSNSHVDYVGRVIDRLDVSEPPEPGDYGFAQFVSVP
                     VGDGEEVVGVVYDTQLANPDYGSFGPRLSSHSELAVLSPDYLNEQGVLLGILLLGWRE
                     RGEGGGWEGRHGVPRRVIPVGQEVFKLGGEDVFGFHKGADGAVQLHYFSQVLAHAGPF
                     AVPLVEAIIEQLEPACDASERQRLCVLKKSLVWQRTLGGMRL"
     gene            1100..1735
                     /locus_tag="VD968_12420"
     CDS             1100..1735
                     /locus_tag="VD968_12420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15242.1"
                     /translation="MKNSPRLGLSLAAFALLAAASPSALAQRPRITDPNEPAAKTPTA
                     QEQQQQTSSLPKPPAAPPTVKAKYEGGMIGYKKSDGTLNFDDGNKRLLFRDKQGRELF
                     SIPYDVIQAAWPDTKARRPTAATVASAIPLPYGVNMAAWFVRKKYRYLTLQYSDPDTG
                     AAGITSFKLGTKEMLSSVLHTLGEKAGMVQRGEAFVRRRDRASGSGTATIP"
     gene            complement(1807..>2012)
                     /locus_tag="VD968_12425"
     CDS             complement(1807..>2012)
                     /locus_tag="VD968_12425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15243.1"
                     /translation="KGWKGRLYGEMYTYFGEFENCSKIESEIKKTDRSNATLQTPALE
                     LQAEADLYNVELKYPFPGCKKAP"
BASE COUNT          335 a          721 c          627 g          329 t
ORIGIN      
        1 cgcgcccgtc gcgattcagg ccgcgccgcc gtcatgccgc cgcgcggcct cggccacata
       61 acgagttcat gcccgcgaga aaccaaaacg gcgcctcgac gacggcgctc gccttcgtca
      121 cctacgcgct cgtgccgtac ctcggcatac tcttctgccc cggcgcgctc ctgctcggcg
      181 ccgtcgggct cgtgcgctcg taccgctcgc cgcacgcggg cgggcgccgc gcctccgcgc
      241 tcggcgtagt gctcggcctc ctagtcctca cggcccagct cgtgctctgg tgggtgctct
      301 acaagatgcc cgagtggtcg aggcaggcga tgttttagcc gtcggctatc ggcagtcagc
      361 taaaacgtta aagcgcaagg ccctgaatct cagccgcggg cagccgggct aagctgattg
      421 ctgatagcag acggccgacc gctgatggct ctatgaccag gattgcgaag atcgtcaagt
      481 cgaactccca cgttgactac gtggggcgcg tgattgacag gctggacgtt tcggagccgc
      541 ccgagccggg agactacggc ttcgcgcagt tcgtctcagt ccccgtcggc gatggcgagg
      601 aggtcgtcgg cgtcgtctat gacacgcagc tcgccaaccc ggactacggc agcttcgggc
      661 cgcgtctttc gtcgcactcg gagctggccg tcttgagccc cgactacctg aacgagcagg
      721 gcgtgctctt ggggatcctc ctcctcggct ggcgcgagcg cggcgagggc ggcggctggg
      781 agggccggca cggcgtcccc cgcagggtga tacccgtcgg gcaggaggtc ttcaagctgg
      841 gcggcgagga tgtcttcggc ttccacaagg gcgcggacgg cgcggtgcag ctacactact
      901 tctcgcaagt gctggcgcac gccgggccgt tcgccgtgcc tctcgtcgag gcgataatcg
      961 agcagttgga gccggcctgc gacgcctccg agcggcagcg cctgtgcgtg ctcaaaaagt
     1021 cgctcgtgtg gcaacgcacg ctcggcggta tgcgtctgta aattcgtaca ggaacccgtc
     1081 cagataggaa ggaaccgcca tgaaaaactc accgaggctc gggctctcgc tcgcggcctt
     1141 cgccttgctc gccgccgcct cgccctcggc cctcgcgcaa cggccgcgca tcacagaccc
     1201 taacgagcca gccgccaaga cgccgactgc ccaggagcag cagcagcaga cctcgagcct
     1261 cccgaagccg ccggccgccc cgcctaccgt caaggctaag tacgagggcg gcatgatcgg
     1321 ctacaagaag tcggacggca cgctcaactt cgacgacggc aacaaacgcc tgctcttccg
     1381 cgacaagcag gggcgcgagc tcttctccat cccctacgac gttatccagg ccgcctggcc
     1441 cgacaccaaa gcgcgcaggc ccacggccgc gaccgtcgcc agcgccatac cgctgcccta
     1501 cggcgtgaac atggccgcat ggttcgtcag gaagaagtac cgctacctga cgctccagta
     1561 cagcgacccc gacacgggcg ccgccggcat cacgagcttc aagctcggca ccaaggaaat
     1621 gctctcctcc gtcctgcaca cgctagggga gaaggccggc atggttcagc gcggcgaggc
     1681 cttcgtccgc cgccgcgacc gcgccagcgg cagcggcacc gccaccatcc cttaacagaa
     1741 aaaccggcgc ggcggggctc aacctcccgc cgcgcccccg tagccgctct gcccgcctcc
     1801 ggccgcctac ggcgccttct tgcagccggg gaacgggtac ttcaattcca cgttgtagag
     1861 gtcggcttcg gcctgaagct caagggccgg cgtttgcagg gtggcgttcg acctgtcagt
     1921 cttcttaatc tcgctctcga tcttcgagca gttctcgaac tcgccgaagt aggtgtacat
     1981 ctcgccgtag agccggccct tccacccctt ca
//
LOCUS       DASPKR010000462         7650 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1234113, whole genome shotgun sequence.
ACCESSION   DASPKR010000462 DASPKR010000000
VERSION     DASPKR010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7650)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7650
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1234113"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1770
                     /gene="topA"
                     /locus_tag="VD968_12430"
     CDS             <1..1770
                     /gene="topA"
                     /locus_tag="VD968_12430"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HYE15244.1"
                     /translation="ERRRNPVPPFITSKLQQEASRKLGFPVKKTMMVAQKLYEGVELG
                     AEGSVGLITYMRTDSTRVSEAALAEARDFISAQYGAAYLPEKAVHYRSKKDAQDAHEA
                     IRPTDVTRTPDSVARYLGKDELRLYRLIWQRFVASQMNPAVFDQTTIDIEAGRLLFRA
                     TGSVLKFDGFLKVYEEGRDEKSEEDDEAARKLPLVERGEHLKLNGVTPEQHFTEPPPR
                     YTEATLVKALEEKGIGRPSTYAAIMTTILDREYVEKLEGRFHPTALGATVNDLLVEGG
                     FDDLFNESYTARMEEELDEIEEGKLHWTAALAEFYEKFARDIKAFEQYVKGRKREAIP
                     TSETCENCGSPMVIKLGRFGQFLACSNYPECRTTREVAKPQAEGDGASSAQAGSAGGD
                     GAEAAEETCELCGKPMAMKRGRFGPFLGCTGYPDCRNIRRVSKKTGQAAPAPVPLEGE
                     TCPLDGAGLVRRHGPYGEFVSCANYPACKYIKRETTGLMCSRPGCRGEIVVKKSKRGK
                     VFYGCSEYPKCDVVYWDKPVAAVCPQCSAPFLLEKTTRKGTVRYCARAEECGYRDDAA
                     QPAPPPAGAQARTAEGGKRPAAR"
     gene            1927..2832
                     /locus_tag="VD968_12435"
     CDS             1927..2832
                     /locus_tag="VD968_12435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding domain-containing protein"
                     /protein_id="HYE15245.1"
                     /translation="MGLQDVPAGGVSFKDLAVDRELAREIQIRLRDLGILDPPVDGDL
                     GPVSRLALKVFSKLVGEPFDEETVSKPIAKALVENSSASLLPVEPGDDFAGKIIKYMQ
                     LKDYWLARAPNFLNIVYVEGVDEDGALNDDAPNKWNDRRLVIQIKNKKPVIVGNWDAT
                     TEPGRHFVVTPMNPKGAARIAFGQYKSWRVGFHNASKPSRHEALVQVDVITVHRDLNK
                     DFKRTGDKTDVGSGFAVNQHKGFNMPVGDIGKASAGCLVGRTNKGHEEFMALVKTDPR
                     YKEATKGYKFMTTVIAGDDLKKTIG"
     gene            3001..4869
                     /locus_tag="VD968_12440"
     CDS             3001..4869
                     /locus_tag="VD968_12440"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYE15246.1"
                     /translation="MNRLSAATALLVFALLAPAPAILRAQQPPAPAPQATPTPTPQAT
                     PSPTPSPTPDVVERIKDEGLNRSQVMQTLSYLTDVIGPRLTGSPALKRANNWTRDKLA
                     EWGLANARLEAWGPFGRGWTLKRFSAEVVAPQAFPLLAYPRAWSPGLAAPLTSEVVLV
                     EASNEAELEKYKGQLRGKIVLSGTVRELRPKFDPVASRLSEKELLDLANAPDPATVPR
                     RQPRQQTPEQIAQQRFGERRDMFFKEEGAALLVGSSPAGDGGMLQFVQSATVPHPPDT
                     PRDKRISPWHVSAPEVVPQMALSNDHFNRLARMIRQGERVTMSVNLEVEFDSSDPMSY
                     NTVAEIPGTDLKDEVVMVGAHLDSWHTATGATDNAAGVAIMMEAVRILKALNLQPRRT
                     VRIALWSGEEQGLLGSRAYVRDHFGPVPTPTPPAGAGATQPDAAAAAVAQKTGQTPKK
                     REAQQRAAQTRATPATPAPAPTPAAPAGPQPPVFKPEHAKLNVYFNADSGTGAIRGIY
                     LQGNEALRPIFRQWLMPFRDFKIGDRNYSASTITVANAGGSDFLSFNAVGLVGLDFLQ
                     DEIEYGTRTWHSSQDNYDRVIPEDVKQAAVIVATFAYNAATMEGMLPRKPFRPPEQ"
     gene            complement(4935..5828)
                     /locus_tag="VD968_12445"
     CDS             complement(4935..5828)
                     /locus_tag="VD968_12445"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HYE15247.1"
                     /translation="MKKLVHLSDLHFGRVDPSLLGPLAESVRVFGPAVVAVSGDLTQR
                     ARASQFMEARAFIGSLPGAKVVVPGNHDVPMYRFWERFLSPLGKFRRYITDDLEPFYG
                     DEELVIVGVNTAHGMTTKYGRVGAREIGRIRERLCSLPDEVVKVVVTHHPFDLPEGHD
                     VREIVGRAAEAMEALAACGADLLLAGHMHLSSTGRTAVRYKTRGHSALFVQAGTATST
                     RGRGESNSFNVIRVRHPHVQVERRVWKPEAGAFLPSVAETFAHTPDGWERLPDETAAG
                     ILFDEESTPLQPSVPAGQVGS"
     gene            complement(5932..6921)
                     /locus_tag="VD968_12450"
     CDS             complement(5932..6921)
                     /locus_tag="VD968_12450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15248.1"
                     /translation="MAEERNLGLARAPEQSYDTDPTKAELQRRMDEARESITQTVTEI
                     KETVVNQYQQVKESISDTLDWREQYRRRPVPFTVGAFGAGLLLGYSVAGAFKGDPGEE
                     DEDFDAETDAAFRRIEGGFDRMKEGGPQRSYAASPIIGAAHSGGAYQRTSRPETNADT
                     EAAEVFGGQEAHGFDSGQAGESGDVGPAQRPSYSSGYQAATARQAAGLSWSGPAGQAE
                     TAAEEEQEPGGPSLLERFKGTKAYDRLQDELSTLGDRALEELSKTARNVVLPALLTKL
                     KDMIGIDLSGQRGGARQQQGSQPSQTGAAGEGAGGGTTAAGSAAYATGGTGTV"
     gene            complement(6900..7382)
                     /locus_tag="VD968_12455"
     CDS             complement(6900..7382)
                     /locus_tag="VD968_12455"
                     /inference="COORDINATES: protein motif:HMM:NF018980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HYE15249.1"
                     /translation="MAEVERRAAAAAPERTEQQQADIDSLPALVGRLGDDVMRLVDTK
                     LSLVKVEIKEDAAFYARNGALTAVGAMVALIGFALVNVAIAFFISTLFASDAAGAVSE
                     RFTPTSYGWGFLITGAVYMVIGAVVVVVMKNRLASYNPAPTTTLEEIRKDKQWLKNEI
                     "
BASE COUNT         1294 a         2654 c         2539 g         1163 t
ORIGIN      
        1 gagcgccgcc ggaaccccgt cccgcccttc atcacgtcga aattgcagca ggaggcttcg
       61 cgcaagctcg gcttccccgt caagaagacg atgatggtgg cgcagaagct ctacgagggc
      121 gtcgagctgg gcgccgaggg ctcggtcggc ctcatcacct acatgcgcac ggactcgacg
      181 cgcgtgtcgg aggcggcgct cgccgaagcg cgcgacttca tctcggcgca gtacggcgcg
      241 gcttacctgc cagagaaggc cgtccactac cgctcgaaga aggacgcgca ggacgcgcac
      301 gaggccatac gccccaccga cgttacgcgc acgcccgact ccgtcgcccg ctacctcggc
      361 aaggacgagc tgcggctcta ccggctcatc tggcagcgct tcgtcgcctc gcagatgaac
      421 ccggccgtct tcgaccagac gacgattgac atagaggccg gccgtctgct gttccgcgcg
      481 acgggctcgg ttctcaagtt cgacggcttc cttaaagttt acgaggaggg gcgcgacgag
      541 aagtccgagg aggacgacga ggccgcgcgc aagctcccgc tcgtcgagcg cggagagcat
      601 ctgaagctca acggcgtcac gcccgagcag cacttcacgg agccgccgcc gcgctacacg
      661 gaggccacgc tcgtcaaggc gctcgaagag aagggcatcg gccgcccctc gacctacgcg
      721 gccatcatga cgaccatact cgaccgcgag tacgtcgaga agctcgaagg gcgcttccac
      781 ccgaccgcgc taggcgcgac cgtcaacgac ctccttgtag agggcggctt cgacgacctc
      841 ttcaacgagt cctacacggc gcgcatggag gaggagctag acgagataga ggagggcaag
      901 ctccactgga cggccgcgct cgcggagttc tacgagaagt tcgcgcgcga cataaaggcg
      961 ttcgagcagt acgtcaaggg ccgcaagcgc gaggccatcc cgaccagcga gacgtgtgag
     1021 aactgcggct cgcccatggt catcaagctc ggccgcttcg ggcagttcct cgcctgctct
     1081 aactaccccg agtgccgcac cacgcgcgag gtcgcgaagc ctcaggcgga aggcgacggc
     1141 gcctcctccg cgcaggcggg ctcggccggc ggcgacggcg cggaggcggc cgaggagacg
     1201 tgcgagcttt gcgggaagcc tatggcgatg aagcgcgggc gcttcggccc gttccttggg
     1261 tgcacgggct accccgactg ccgcaacata cgccgcgtga gcaagaagac ggggcaggcc
     1321 gccccggcgc cggtgcctct ggaaggcgag acgtgcccgc tggacggcgc cgggctcgtt
     1381 cgccgccacg gcccctacgg tgagttcgtc tcctgcgcga actaccccgc gtgtaagtac
     1441 atcaagcgcg agacgacggg gctgatgtgc tctcggccgg gctgccgcgg cgagattgtc
     1501 gtcaagaagt cgaagcgcgg caaagtcttc tacgggtgct ccgagtaccc gaagtgcgac
     1561 gtggtctatt gggacaagcc cgtggccgcc gtatgccctc agtgctccgc gcccttcctg
     1621 ttagagaaga cgacgaggaa ggggactgtg cgctactgcg cccgcgcgga ggagtgcggc
     1681 taccgcgacg acgcggcgca gcccgcgccc ccgccggccg gcgcccaggc gcggacggcc
     1741 gaggggggga agcgcccggc cgcgaggtga ggcttcgcga acactcttaa cggatgcaga
     1801 agggcgccgg ccggggtcgg cgcctttttg atgcccgcgc ccggcgccgg aaaaagcttt
     1861 gcgccccgcc ccgcttgcat taatatctgc gcgctttacc aaaccgttcg cgaaaggaac
     1921 ctcaccatgg gactccaaga cgtaccggca ggcggcgttt cgttcaagga cttggcggta
     1981 gatagagagc tcgcccgcga aattcagatt cggctcaggg acttggggat actcgacccg
     2041 ccggtggacg gcgacctcgg ccccgtgtcg cgcctcgcgc tcaaggtgtt cagcaagttg
     2101 gtgggcgagc ccttcgacga agagacggtg agcaagccca tcgccaaggc gctcgtcgag
     2161 aacagctccg caagcctgct gccggtggag ccgggcgacg acttcgccgg caagataatc
     2221 aagtacatgc agctcaaaga ctactggctg gcgcgcgcgc ccaacttcct gaacattgtg
     2281 tacgtcgagg gcgtggacga ggacggcgcg ctcaacgacg acgcgcccaa caaatggaac
     2341 gaccgccgcc tcgtcataca gataaagaac aagaagccgg tcatcgtggg caactgggac
     2401 gcgacgaccg agccgggccg ccacttcgtc gtgaccccca tgaacccgaa gggcgcggcg
     2461 cgcatcgcct tcgggcagta caagtcctgg cgcgtgggct tccacaacgc gagcaagccg
     2521 tcgcgccacg aggcgctcgt gcaggtggac gtcatcaccg tccaccgcga cctcaacaag
     2581 gacttcaagc gcacgggcga caagacggac gtgggcagcg gcttcgccgt caaccagcat
     2641 aagggcttca acatgcccgt cggcgacata ggcaaggcga gcgccggctg cctcgtgggc
     2701 cgcacaaaca agggccacga ggagttcatg gcgctcgtga agaccgaccc gcgctacaag
     2761 gaggcgacca aaggttacaa gttcatgact acggtcatag ccggcgacga cctcaagaag
     2821 acaatcggct gagctgtcgc cggtcggcgc cgcgaaagcg atgggggagg gccgcgcggc
     2881 cctcccccat cgctttcgcg gcgcttctgt tttgacggca gggcacgtta gttaaatccg
     2941 cggggcgaat ttataatgac ggccggcaga tgaaaacccg cctccggaga gcccaatcga
     3001 atgaacagac ttagcgcagc cacggcgctg ctcgtcttcg cgctgctcgc gcccgcgccg
     3061 gcgatcctcc gcgcgcagca gccgcccgcg cccgcgccgc aggcgacgcc gaccccgacg
     3121 ccgcaggcga cgccttcgcc gacgccgtcg cccacgcccg acgtggtcga gcgcataaag
     3181 gacgagggcc ttaaccgctc gcaggtgatg cagacgctct cctacctgac ggacgtgatc
     3241 ggcccgcgcc tgacgggctc gccggccctt aagcgcgcga acaactggac gcgcgacaag
     3301 ctcgcggagt ggggcctcgc gaacgcgcgc ctcgaagcct gggggccttt cgggcgcggg
     3361 tggactctca agcgattctc ggccgaagtc gtcgcgccgc aggcgttccc gctgctcgcc
     3421 tacccgcgcg cgtggtcgcc gggcctcgcg gcgccgctca cctcggaagt cgtgctcgtc
     3481 gaggcttcaa acgaggccga gcttgagaag tacaaggggc agctacgcgg caagattgtg
     3541 ctctcgggga cggtgcgcga gctgcggccg aagttcgacc ccgtggcctc gcgcctgtcc
     3601 gagaaggagc ttttagacct ggcgaacgcg cccgacccgg cgaccgtgcc gcgccggcag
     3661 ccgcggcaac agacgcccga gcagatcgcg cagcagcgct tcggcgagcg ccgggatatg
     3721 ttcttcaagg aggagggcgc ggcgctcctc gtcggctcta gcccggcggg cgacggcggg
     3781 atgctacagt tcgtgcagtc ggccaccgtg ccgcacccgc ccgacacgcc gcgcgacaag
     3841 cgcataagcc cctggcacgt gagcgcgccc gaggtggtgc cgcagatggc tctgtctaac
     3901 gaccacttca accggctcgc gcgcatgatt cggcagggcg agcgcgtgac gatgagcgtc
     3961 aacctcgaag tcgagttcga ctcgagcgac ccgatgagct acaacaccgt cgccgaaatc
     4021 cccggtaccg acttgaagga cgaggtcgtc atggtcggcg cgcacctcga ctcgtggcac
     4081 acggcgacgg gcgcgaccga caacgccgcc ggggtcgcaa taatgatgga ggccgtgagg
     4141 attcttaagg ccctcaatct tcagccgcgc cgcaccgtcc gcatagccct ctggagcggc
     4201 gaggagcagg ggctgctcgg ctcgcgcgcg tacgtgcgcg accacttcgg ccccgtgccg
     4261 acgcctacgc cgccggccgg agccggcgcg acacagccgg acgccgccgc ggccgccgtc
     4321 gcgcagaaga cgggccagac tccgaagaag cgcgaggcgc agcagagggc cgcccagact
     4381 cgcgcgacac ccgcgacgcc cgcgcccgcg ccgacccccg ccgcgcccgc ggggccgcag
     4441 ccgcccgtct tcaagcccga gcacgcgaag ctcaacgtct atttcaacgc cgacagcggc
     4501 acgggcgcca ttcgcggcat ataccttcag ggcaacgagg ccctgcggcc catcttccgc
     4561 cagtggctga tgcccttccg cgatttcaag ataggtgaca ggaactactc ggcctcgacc
     4621 atcacggtcg cgaacgcggg cggctccgac ttcctctcct tcaacgccgt cggcctcgtc
     4681 ggcctggact tcctgcagga cgagatcgag tacggcacgc gcacgtggca ttcgagccag
     4741 gacaactacg accgcgtcat ccccgaggac gtgaagcagg ccgccgtcat cgtcgccacc
     4801 ttcgcctaca acgccgccac gatggaaggg atgctccccc gcaagccctt ccgcccgccc
     4861 gagcagtgaa gtgacttgaa agatagaaga agggtgacgg gaggcggcgt gcctcccgtc
     4921 acccttcttc tatcttagct tccgacttgt ccggccggga cgctgggctg aagcggcgtg
     4981 ctctcttcgt cgaagaggat gccggcggcg gtctcgtcgg gcaggcgctc ccacccgtcg
     5041 ggcgtgtggg cgaaggtctc ggcgacggaa gggaggaagg cgcctgcctc cggcttccag
     5101 acccgccgct cgacctgcac gtgcgggtgg cgcacccgta tgacgttgaa ggagttcgac
     5161 tcgcctcggc cgcgcgtgga tgtggccgtg cctgcctgca cgaagagcgc ggagtggccg
     5221 cgcgtcttgt agcgcacggc cgtgcggccc gtgctgctca ggtgcatgtg gcccgcgagc
     5281 aagaggtctg cgccgcaggc ggcgagcgcc tccatcgcct ctgcggcgcg gccgactatc
     5341 tcgcgcacgt catgcccctc gggtaaatca aaagggtggt gcgtgacgac tactttaacc
     5401 acttcatccg gcagcgagca gagccgctcg cgtatgcggc ctatctctcg cgccccgacg
     5461 cgcccgtact tcgtcgtcat cccgtgcgcg gtgttgacgc ccacgatgac caactcttcg
     5521 tccccgtaga agggctcgag gtcgtccgtt atgtatcgcc tgaacttgcc gagcgggctt
     5581 aagaaccgct cccagaagcg gtacatagga acgtcgtggt tgccggggac gacgaccttc
     5641 gcgccgggca gcgagcctat gaaggcgcgc gcctccatga actgcgaggc ccgcgcgcgc
     5701 tgtgtcaggt cgcccgagac ggcgacgacc gcggggccga acacccggac gctctccgcg
     5761 agcgggccca ggagcgacgg gtcaacgcgc ccgaagtgca ggtcggagag gtggacgagc
     5821 ttcttcataa aaagtaagac aggcggcggt gacagttaag agcggcgccg ccgcctgtca
     5881 cccgccgcct gtcgttcaca caccgagccg gctctcccgg cgcagcccgg cttacacagt
     5941 gccggtgccg cccgtcgcgt aggccgcgga gccggccgcc gtcgtgccgc cgcccgcgcc
     6001 ctcgccggcg gcgcccgtct gcgaaggctg gctgccctgc tgctgccgcg cgccgccgcg
     6061 ctgcccggac aggtcaatgc cgatcatgtc cttgagcttc gtaaggagcg cggggagcac
     6121 gacgttcctg gccgtcttgg aaagctcttc gagcgcgcgg tcgcccaaag tcgagagctc
     6181 gtcctggagg cggtcgtaag ccttcgtccc cttgaagcgt tcgaggaggc tcggcccccc
     6241 cggctcttgc tcctcctcgg ccgccgtctc ggcctgcccc gccggcccgg accagctaag
     6301 ccccgcagcc tgacgtgccg tcgccgcctg atagccgctg ctgtaggacg ggcgctgcgc
     6361 aggcccaacg tcgcccgact cgcccgcctg ccctgagtcg aagccgtgcg cctcctgccc
     6421 gccgaagact tcggccgctt ccgtgtcggc gttcgtctcg gggcgcgagg tgcgctggta
     6481 tgcgccgccg ctgtgcgccg cgccgatgat gggagaggcc gcgtaggagc gctgcgggcc
     6541 gccttccttc atgcggtcga agccgccctc gatgcggcgg aaagccgcgt cggtctccgc
     6601 gtcgaagtcc tcgtcttctt cgcccgggtc ccccttgaac gcgccggcca cgctgtagcc
     6661 gagcagtagg cccgcgccga acgccccgac ggtgaagggg acggggcggc ggcggtactg
     6721 ctcgcgccag tcgagcgtgt cgctgatgga ttctttaacc tgctggtact ggttcaccac
     6781 tgtctccttg atctccgtga cggtctgtgt gatggactcg cgcgcctcgt ccatgcggcg
     6841 ctgaagctcc gccttcgtgg ggtcggtgtc gtaggactgc tcgggcgcgc gcgccagacc
     6901 tagatttcgt tcttcagcca ttgcttgtcc ttccttatct cctcgagcgt ggtggtcggt
     6961 gccgggttgt acgaggcgag acggttcttc atcacgacga ctacgacggc gccgatgacc
     7021 atatagacgg cgccagtgat gaggaagccc cagccgtagc tggtcggcgt gaacctctcg
     7081 gagacggcgc cggccgcgtc gctcgcgaac agcgtcgaga tgaagaaagc tatcgccacg
     7141 ttgacgagcg cgaagcctat gagcgccacc atcgcgccta cggccgtcag cgcgccgttg
     7201 cgcgcgtaga acgccgcgtc ctcctttatc tcgaccttca caaggctgag cttcgtgtca
     7261 acgagccgca tcacgtcgtc gcccagccgc ccgaccagcg ccggcaggct gtctatgtcg
     7321 gcctgctgct gctcggtgcg ctcaggcgcc gcggcggccg ccctcctctc gacttcggcc
     7381 atctcgctca cctcccccgg aactctaagt ttcaggtttc aagttccagg ttccaagtga
     7441 agaagccgtc ttcgacccgg aacctggaac cgggaactcg gaactttctt aacgccggcc
     7501 gccgcgtatg agcaggccga ggacgaagcc cgcggccgcg gcgacgagca gcgcttggcc
     7561 ggggttctgc cgcgcgtact gcttggcgtc gtccgccacc tgcgcgtagt caatgttgcg
     7621 caggtcttga atcttcccgc ccacggcgcc
//
LOCUS       DASPKR010000463         3676 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1879783, whole genome shotgun sequence.
ACCESSION   DASPKR010000463 DASPKR010000000
VERSION     DASPKR010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3676)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3676
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1879783"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..1875)
                     /gene="ggt"
                     /locus_tag="VD968_12460"
     CDS             complement(139..1875)
                     /gene="ggt"
                     /locus_tag="VD968_12460"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HYE15250.1"
                     /translation="MKRSRVLNFKFQIRLFLVIAFLIAPLPQARAASREPVRARRGMV
                     ASTSKLASQAGVDVLRRGGNAVDAAVAVAFALAVTYPAAGNLGGGGFMMIRLRDGRTT
                     AIDYREMAPAAAHRNVYLDDRGELIQGEGSSTLGYRASGVPGTVAGMDLALKKYGSGR
                     FTWAQLVEPARRLAAEGFPLPYGLARSLRTNKELGIYPETKKVYQNNGRFWQEGAVWR
                     QPELAATFARIQRRGPREFYEGRTARLVAEDMRRNRGLITLEDMRNYVAKERSPVRGN
                     YRGFEVISMPPPSSGGAVLIEMLNILEGFDLKSLGWSSSERYHLMTEAMRRAFADRAE
                     YMGDADFVDVPVAGLVDKSYAERLRRGIKLDRASTSAEVRAGRPAGAESEETTHFTVV
                     DAEGNCVSNTYTLNDSFGSKVVIRGTGILMNNEMDDFAAKPGTPNIYGLIQGERNAVA
                     PRKRPLSAMTPTFVLRKDGTLWFAVGSPGGPTIINTVLQVITNIVDFEMNIQQAIDAP
                     RIHHQWLPDEVVHEPYGISADTRRALEARGHRLTARPRYMGDAQGIMIEEGTGVRLGA
                     SDPRNFGEPVGY"
     gene            complement(1872..2354)
                     /locus_tag="VD968_12465"
     CDS             complement(1872..2354)
                     /locus_tag="VD968_12465"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE15251.1"
                     /translation="MELTKAETPEQVEEARRLFKEYAAATGVDLCFQNFGQELDSLPG
                     DYAPPTGRLLLAIADGRAAGCVALRKFGDGACEMKRLYLRPEFRGTGAGRALAEAVIG
                     EARSIGYERMLLDTLPSMREAIALYRSLGFRETEPYRFNPVEGSLYMELNLAGGREAE
                     "
     gene            complement(2367..3542)
                     /locus_tag="VD968_12470"
     CDS             complement(2367..3542)
                     /locus_tag="VD968_12470"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYE15252.1"
                     /translation="MPAAFDRETAARLLEYFARRRGDVLALTRALCEAESPSGDREGS
                     RAVVRSVERAARSVPHVGAVERVEAANGYGEHLRVTAFCDGVKDERTLLILGHTDTVH
                     PRGSLSARPWREEGGRIYAPGIFDMKAACAVALEALRACGELGLRPRSPVRLLLTCDE
                     ESGSYSGRALVEEEARRAEHVLVLEPPAPGGRAKTARKGTGLFTMTVRGRASHAGLEP
                     EKGVSAVLELARQVVRLHSLADPSEGTTVSVGVISGGTHSNVVPAEARAEIDVRFSTA
                     EEARRVEREIRGSAPFDERAQVEVSGGTNRPPLERTPAAAELYERARGIAEVLDFELG
                     EASVGGASDGNFAAAAGAAVLDGLGVDGGGAHAEHEHILADRVAPRGALLAALIANL"
BASE COUNT          552 a         1295 c         1243 g          586 t
ORIGIN      
        1 cgccggcgca tcggcccgcc gcgcggtcac ggccggcggg attaaagttg gcgagaggag
       61 cagcgcgaag gctgcggcgg tgatgaaaga cgctctgcgt gaacccttca agtaaaaatt
      121 ctccctgtgc tggtgccttc agtagccgac cggctcgccg aagttgcggg ggtcgctcgc
      181 gccaaggcgc acgcccgttc cctcctcgat cattatgccc tgcgcgtcgc ccatgtagcg
      241 cggccgcgcc gtcaagcggt ggccgcgcgc ttcgagcgcc cgccgcgtgt cggccgaaat
      301 gccgtagggc tcatggacga cctcgtcggg cagccactgg tggtgtatgc gaggggcgtc
      361 aattgcctgc tgtatgttca tctcgaagtc aacaatgttc gtgatgactt ggagaaccgt
      421 gttgatgatg gtcgggccac ccggcgagcc cacggcgaac cagagcgtgc cgtccttgcg
      481 cagcacgaag gtcggcgtca tggccgagag cggacgcttg cgcggggcca cggcgttgcg
      541 ctcgccctga atcagcccgt aaatgttcgg cgtccccggc ttcgcggcga agtcgtccat
      601 ctcgttgttc atcagaatcc ccgtcccgcg tatcacgacc ttcgagccga agctgtcgtt
      661 caaggtgtaa gtgttcgaga cgcagttgcc ctcggcgtca acgaccgtga agtgcgttgt
      721 ctcctcagac tccgcgcccg cgggccggcc ggctcgcacc tccgcgctcg tcgaggcgcg
      781 gtcgagcttg ataccgcgcc tcagccgctc cgcgtacgac ttgtcaacga ggccggcgac
      841 gggaacgtca acgaagtcgg cgtcgcccat gtactcggcg cggtccgcga aggcgcgccg
      901 catcgcctcc gtcataaggt ggtaacgctc ggacgacgac cagcccaggc ttttcaggtc
      961 gaagccctcg agtatgttta gcatctcgat tagcaccgcc ccgccggagg agggcggggg
     1021 catcgagatg acctcgaagc cgcgatagtt gccgcgaacg ggcgagcgtt ccttcgccac
     1081 gtagttgcgc atgtcttcga gggtgatgag cccgcggttg cgccgcatgt cttctgcgac
     1141 gaggcgcgcc gtgcgcccct cgtagaactc gcgcgggccg cggcgctgta tgcgcgcgaa
     1201 ggtcgctgcc agctcaggct gacgccacac ggcgccctcc tgccagaacc gcccgttgtt
     1261 ctgatagacc ttcttcgtct cggggtagat gccaagctcc ttgttcgtgc ggagcgagcg
     1321 cgcaagcccg tagggcagcg ggaagccttc ggccgcgagg cgccgcgcag gctcgactag
     1381 ctgcgcccag gtgaaacgcc ccgagccgta cttcttcaag gcgagatcca tccccgcgac
     1441 cgtgccgggg acgcccgacg cgcggtagcc gagcgtcgag gagccctcgc cctgaatcag
     1501 ctcgcctcgg tcgtccagat agacgttcct gtgcgccgcg gcaggcgcca tctcgcggta
     1561 gtcaatcgcg gtcgtgcggc cgtcgcgcag ccgtatcatc atgaagccgc ctccgccgag
     1621 gttgccggcc gccgggtagg tgacggcgag cgcgaaggcg acggcgacgg ccgcgtcaac
     1681 ggcgttgccg ccgcgccgga gcacgtccac gcccgcctgc gacgcgagct tgcttgtgga
     1741 cgcgaccatc ccgcgccgcg cgcgcacggg ctcgcgcgag gcggcccgcg cctgcggcag
     1801 cggcgcgatg aggaaggcga tgacgaggaa gagcctaatt tgaaatttga aatttaaaac
     1861 ccgagacctc ttcattcagc ctcccttccg ccagccaggt taagctccat gtagagcgac
     1921 ccctcgacgg ggttgaagcg gtagggctct gtctcgcgga agcctaacga gcggtagagc
     1981 gcaatcgcct cgcgcatcga ggggagcgtg tcgagcagca tcctctcgta gccgattgag
     2041 cgcgcctcgc cgatgacggc ctccgcgagg gcgcggcccg cgcccgtccc gcggaactcg
     2101 gggcggaggt agaggcgctt catctcgcag gcgccgtcgc cgaactttct aagggcgacg
     2161 cagccggccg cgcggccgtc agcaatcgcg agcagcagcc ggcccgtagg cggcgcgtag
     2221 tcgccgggca gcgagtcgag ctcctgcccg aaattctgga agcaaaggtc aacgccggtc
     2281 gccgccgcgt actctttgaa gaggcgccgc gcctcctcaa cctgctcggg cgtctcggcc
     2341 ttcgtcagtt ccatctcttt ttgcgcctaa aggttcgcga tgagcgccgc gagcagagcg
     2401 ccgcgaggcg cgacgcggtc ggcgaggatg tgctcgtgct cggcgtgcgc gccgccgccg
     2461 tcaacgccga ggccgtcgag gactgcggcg cccgccgcgg ccgcgaagtt gccgtccgaa
     2521 gcgccgccga cgctcgcctc gcccagctcg aaatcaagaa cttcggcgat gccgcgcgcg
     2581 cgctcgtaaa gttcggccgc ggccggcgtg cgctctagcg gcgggcggtt ggtgccgccg
     2641 ctgacctcga cttgcgcccg ctcgtcgaag ggcgccgatc cccgaatctc acgttcgacc
     2701 cgccgcgcct cttcggcggt cgagaaacgc acgtcaatct cagcccgcgc ctccgcaggg
     2761 acgacgttcg agtgcgtgcc tccggagatg acgccaacgc tcacggtcgt cccctccgac
     2821 gggtcggcca gcgagtgcag ccgcacgacc tgccgcgcca gctcgagcac ggcgctcacg
     2881 cccttctcgg gctcaaggcc cgcgtgcgag gcgcggcccc gcaccgtcat tgtgaaaagc
     2941 cccgtcccct tgcgagcggt cttcgcgcga ccgcccggcg cgggcggctc gagcacgagc
     3001 acgtgctcgg cgcgtcgcgc ctcctcctcg accagcgccc gcccgctgta gctccccgac
     3061 tcctcgtcgc acgtgagcag cagccggacg ggactgcgcg gccgaaggcc cagctcgccg
     3121 cacgctcgca gcgcttcgag ggcgacggcg cacgccgctt tcatgtcgaa gatgccgggc
     3181 gcgtagatac gccctccctc ctcgcgccac ggccgggccg agagcgagcc gcgcgggtga
     3241 acggtgtccg tgtggccgag tatgaggagc gtgcgctcat ccttcacgcc gtcgcagaag
     3301 gcggtcactc tcaggtgctc gccgtagccg ttcgcggcct ctacccgctc gaccgcgccg
     3361 acgtgcggga ctgagcgcgc ggcgcgctcg actgaacgga cgaccgcgcg gctgccttcc
     3421 cggtcgcccg aaggcgactc ggcctcgcac agcgcgcgcg tgagcgcgag cacgtcgccg
     3481 cgcctgcgcg cgaaatattc cagcaggcgc gcggctgtct ctctgtcgaa ggcagcgggc
     3541 atcttttgct tacggtttaa gtgtcacggc ccggcggtga agacctcttt cctcaccgtg
     3601 agcgattcga cgcggggcag gttcacctcg aagccaatgc cggggccgcc gggcgcgact
     3661 atcgtcccgc gcggcg
//
LOCUS       DASPKR010000464         3280 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1748174, whole genome shotgun sequence.
ACCESSION   DASPKR010000464 DASPKR010000000
VERSION     DASPKR010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3280)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3280
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1748174"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(267..>3280)
                     /locus_tag="VD968_12475"
     CDS             complement(267..>3280)
                     /locus_tag="VD968_12475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15253.1"
                     /translation="IDTLSMGAPPTPACNLPPVPSAGQTVTWEAERSPYRVCENIAVP
                     PGSTVNVEAGVRVDFDPLRQLVVNGTLNIQGSPSARVSFSGSAVSPPVVKTINGTVNA
                     SFVDFGMPFFVEDGSDVALSDCSFSGTGRLGSRELPDVAPFIRLERCTFDSSSMTLPD
                     ALVRLRGNTFIDTYALILRGYADVTAPNNTFTGQPLRVVREGPSVAQPHYIDGVSASG
                     IFGDAGLSLSGGSYLLGPSVVLQNNLYPVEVEGGLMPGSRVPTTGNLNNVVDVNSGGF
                     AGVGRWPDLGLPYRLTHGSGSLPGGQLTIYPGVTVEGDPGTGLVLSSTRRLIADGLPE
                     APITFKSTLPGQVWQGLAFYGNSTEGPRLEYCRVSDARFGTISSDNLLYLQNCDFQNN
                     EVGANANTFGWTIFGKTRFLANATGGSVSDHGTLSLNNPSNPNSFERNTVGIDAFEIG
                     SRSDARNVWWGSPTGPRHPQNPNGTGDPIVGPGAYGILFSPFLTAPPDAENTPPVVRL
                     VEPGLNWSGHWPPEYLLEPGARYVIRWETRDTDAVVKHRILFSPAGHYPDRFTVVADD
                     LPGDQRSFEWTVPSVGFAVTNEPQFLRVVAVDAAGQEGWDQTPLLVPSGRLTGELTIT
                     TDLSGRTFHAGEHIPDVKWTGTVSDFPIYEPFIIFESDGALMQGVNVNGRGGVIPQRL
                     PAISTDRARLAVRAHNNSNDVKWFFAPGYFSVRHDPRLGLVPPTVQLLTPAAGESFPS
                     GGTVPITWDASDDEALYSFDVQASYDGGRTWHVVARDLPATARSYDWHLPPGGGLSAV
                     RVRVVARDIRFQNSASDGAFNVGQQEAAAVTSLALAPGAVAGGNASQATVTLSAPAPA
                     GGAAVSLASSDATADAPSSVVVPAGESSATFTVTTRPVAAKTGVTISASYGGATRKAA
                     LSVTPSASTDTDAVSVARAEYAVSRKVLRVTATSTSASATLSVHVTSTGALIGTLANT
                     GGGKHSGAFALPASPRSVIVRSSLGGAASKG"
BASE COUNT          481 a         1042 c         1247 g          510 t
ORIGIN      
        1 gcgccagacc cccgtcacag agatggcgtg cgccccggcg gggcgggcca gcgagcctga
       61 taactcgtgg cgaatcaccg ggttcacacg cgactgtgat gctccccccg ccgcgcgtcg
      121 ttgccccgcc gccgaaattc ggccttattt aacgcaccga gagcctgact cggcggattc
      181 taccataggc gggctcaccc ggttgcgccg aacctacgcc cgctgccggc gtaaggccgc
      241 cgagggccgc aggggttact ttggagtcac cccttcgacg cggcgccgcc gaggctgctg
      301 cggacgatga cgctgcgcgg gctcgcgggc aaggcgaacg cgcccgagtg cttgccgccg
      361 cctgtgttgg cgagcgtccc gatgagcgcg cccgtcgagg taacgtggac gctcagggtc
      421 gccgaggcgc tggtgctcgt cgccgtgacg cgcagcactt tcctggagac ggcgtactcg
      481 gcgcgcgcga ccgagacggc gtcggtatcg gtcgaggctg agggcgtaac gctgagcgcg
      541 gccttgcggg tcgcgccgcc gtaggacgcc gaaatggtga cgcccgtctt cgccgcgacc
      601 gggcgcgtcg tgacagtgaa ggtggcgctg ctctctccgg ccgggacgac gacgctcgag
      661 ggcgcgtcgg ccgtcgcgtc gctgctcgcg aggctgacgg cggcgccgcc cgcgggggcc
      721 ggcgccgaga gcgtgacggt ggcctgcgag gcgttgccgc ccgccacggc gccgggggcg
      781 agcgcgagcg atgtgaccgc ggccgcctct tgctggccca cgttgaaggc gccgtcggag
      841 gcgctgttct ggaaccgtat gtcgcgcgcg acgacgcgca cgcgcacggc cgagaggccg
      901 ccgcccggcg ggaggtgcca gtcgtagctc cttgccgtcg cgggcaggtc gcgggcgacc
      961 acgtgccacg tgcgcccgcc gtcgtaggac gcctgcacgt cgaacgagta gagcgcctcg
     1021 tcgtcggacg cgtcccaggt tatgggcacg gtgccgcccg acgggaaaga ctctcccgcg
     1081 gcgggcgtca ggagttgtac tgtcggcggg acgaggccga ggcgcgggtc gtgacggacg
     1141 gagaagtagc cgggcgcgaa gaaccacttc acgtcgttcg agttgttgtg cgctcggacg
     1201 gcgagtcgcg cgcggtcggt gctgatcgca gggaggcgct gcgggatgac cccgccgcgg
     1261 ccgttgacgt tgactccctg catcaacgcc ccgtccgact cgaagatgat gaagggctcg
     1321 tagatgggga agtcgctgac cgtgcccgtc catttcacgt ccgggatgtg ctcgcccgcg
     1381 tggaaagtcc tccccgagag gtcggtcgtg atggtgagct cgcccgtgag gcggcccgat
     1441 gggacgagca ggggagtctg atcccagccc tcctgcccgg ccgcgtccac ggcgacgacg
     1501 cggaggaact gcggctcgtt ggtgacggcg aacccgacgc tcgggactgt ccactcgaag
     1561 ctgcgctggt cgccggggag gtcgtcggcc acgaccgtga aacggtcggg gtagtggccg
     1621 gctggcgaga acaggatgcg gtgtttgacg accgcgtcgg tgtcgcgcgt ctcccagcgt
     1681 atgacgtacc ttgcgccggg ctcgagcaag tactcgggcg gccaatgccc cgaccagttg
     1741 aggccgggct cgacgaggcg gacgacgggc ggcgtgttct ctgcgtcggg cggcgcagtc
     1801 aggaagggcg agaacagtat gccgtaagcg ccggggccga cgatggggtc gcccgtgccg
     1861 ttcgggttct gcgggtggcg cggccccgtg gggctccccc accagacgtt gcgcgcgtcc
     1921 gagcgggagc cgatctcgaa ggcgtctatg ccgacggtat tgcgctcgaa cgagttgggg
     1981 ttcgacgggt tgttgagcga gagcgtgccg tggtcgctga cgctgccgcc ggtcgcgttg
     2041 gcgaggaacc gcgtcttgcc gaagatagtc cagccgaagg tgttggcgtt ggccccgacc
     2101 tcgttgttct ggaagtcgca gttctgcaag tagagcaggt tgtcggagct gatcgtgccg
     2161 aagcgcgcgt cgctcacgcg gcagtattcg aggcgcgggc cttcggtgga gttgccgtag
     2221 aaggcgagcc cctgccagac ctggccgggc agagtgctct tgaaagttat gggggcttcg
     2281 ggcaggccgt cggctatgag gcggcgcgtc gagctgagca caagccccgt gccggggtcg
     2341 ccctcgaccg tcacgccggg gtaaatcgtc agttgcccgc cggggaggct gccggagcca
     2401 tgagtgaggc ggtacgggag gcccaggtca ggccagcggc cgacgccggc gaagccgccc
     2461 gagttgacgt ccacgacgtt gttcaggttc cccgtcgtcg gcacgcggct ccccggcatg
     2521 aggccgcctt cgacctcgac ggggtacagg ttgttctgta agacaaccga ggggcctagc
     2581 aggtagctgc cgcccgaaag cgacaacccc gcgtcgccga agatgccgga ggcgctgacg
     2641 ccgtctatgt agtgcggctg cgcaacgctc ggcccctctc gcacgacgcg cagcggctgg
     2701 cccgtgaagg tgttgttggg cgctgtcacg tcggcgtagc cgcgcaggat gagcgcgtag
     2761 gtgtctatga aggtgttgcc gcgcaggcgg acgagcgcgt ccggcagcgt catgctgctc
     2821 gaatcgaacg tgcagcgttc gaggcggatg aagggcgcca cgtcgggcag ttcgcggctg
     2881 cccagacggc ccgtccccga gaaagagcag tcggagaggg cgacgtccga cccgtcctcg
     2941 acgaagaacg gcatgccgaa gtcaacgaac gaggcgttga ccgtgccgtt gatggttttg
     3001 acgacgggag gggagacggc cgagccgctg aaggagacgc gcgcggacgg cgagccctgt
     3061 atgttgagcg tgccgttgac gaccaattgg cgcagcgggt cgaagtcaac tctgacgccg
     3121 gcctcgacat tgactgtgga gccgggcggg acggcgatgt tctcgcagac cctgtagggg
     3181 ctgcgctcgg cctcccacgt caccgtctgc cccgcgctag gcaccggcgg caggttgcat
     3241 gcgggggtgg gcggcgcccc catgctcaga gtgtctatcc
//
LOCUS       DASPKR010000465         5008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1620364, whole genome shotgun sequence.
ACCESSION   DASPKR010000465 DASPKR010000000
VERSION     DASPKR010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5008)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5008
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1620364"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..903)
                     /locus_tag="VD968_12480"
     CDS             complement(166..903)
                     /locus_tag="VD968_12480"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE15254.1"
                     /translation="MSASTEPLVRLDGVKKVFYTDEVETHALSGIHLEIEKGQYVSIA
                     GPSGCGKSTLLSILGLLDSPSEGEYVLNGTPVANLSLSERARIRNREIGFIFQAFNLI
                     GDLNVYENVELPLTYRDMTSAERRGRVEEALLKVGMSHRMKHYPSQLSGGQQQRVAVA
                     RAVAGNPSILLADEPTGNLDSTNGEAVMNLLRELHAGGATICMVTHDPRYAKYADRTF
                     HLFDGQVVEETHEPRAEEELEESGFKL"
     gene            complement(934..2190)
                     /locus_tag="VD968_12485"
     CDS             complement(934..2190)
                     /locus_tag="VD968_12485"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HYE15255.1"
                     /translation="MDVKRPTQKNKRRLRLALYASACVLAAVLITYGLSRLKPAAPSV
                     ARSTLYTGQVKRGQMLRQVRGIGTLVPEEIRQVAAPVEGRVEQIFAKPGEQVSAGSVL
                     VELSNPELRQSAVDVEYRIKSAEADLNNLRARLESERMSQQAATAQIESEYKQAKIQF
                     DTDEELAKEGLVPAITLRISRVRVEQLANRLEIERKRAGSAQESTAAQVAAQQARIEQ
                     LRAQLRLNREQVASLLVRAGTNGVLQQVTVEVGQQITPGTNIARVADPSSLKAVLQIP
                     ETQAKDVSLGQRADVDTRGAGVVPGTVARIDPAVQNGTVLVDVRLEGGLPAGARPDLS
                     VDGTIELERLDNVLYTSRPASGGAQSSVTLFRLSADGREAVRVPVRLGRASVNTVEIL
                     EGLSEGDTVILSDTQQWDGVDRLRLD"
     gene            2493..2819
                     /locus_tag="VD968_12490"
     CDS             2493..2819
                     /locus_tag="VD968_12490"
                     /inference="COORDINATES: protein motif:HMM:NF022643.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2834 domain-containing protein"
                     /protein_id="HYE15256.1"
                     /translation="MQWLYLATAVLGAVLPLSFLFPFLAAHGPDLPLLFRQLFQNNVS
                     SFFGVDVIVSAAVVALFVYSEGRMRRMRRLWVYIACLLLVGVSFALPLFLFARERSIE
                     AEASAR"
     gene            2825..3328
                     /locus_tag="VD968_12495"
     CDS             2825..3328
                     /locus_tag="VD968_12495"
                     /inference="COORDINATES: protein motif:HMM:NF005994.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topology modulation protein"
                     /protein_id="HYE15257.1"
                     /translation="MLVIGSGGAGKSTLSARLGEALGLEVLHLDAHHWRAGWTEPPKE
                     EWQRIVAGLIERDSWVMDGNYSGTLEMRMEACDTVVFLDLPRTLCLWRVIKRLLTYRG
                     RPRPDMAEGCGEKLDLKFLRWVWDYPERTRPVVLELIGAHGRDKKIFHLRSRAEVAEF
                     LREVGGA"
     gene            complement(3325..4353)
                     /locus_tag="VD968_12500"
     CDS             complement(3325..4353)
                     /locus_tag="VD968_12500"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low specificity L-threonine aldolase"
                     /protein_id="HYE15258.1"
                     /translation="MRPKRGFASDNNAGAHPRVMEAVASANAAGHVVAYGDDPFTEEA
                     KRKFRALFGDSAEVFFVFGGTGANALALQAMTRPHEAVVCAATAHINVDECGAPEKFT
                     GCKLLDVPTPDGKLTPALVEPLLGRVGDQHHVQPRVVSVSQPTELGTVYTVEEMGRLA
                     GLARARGLLLHVDGARIANAAAHLGVPLGELTAGVDALSFGGTKNGMLYGEAVVFLRP
                     ELARGFEFVRKQGAQLPSKMRFVAAQFNALLADGLWLETAAHANRMARALASELERIP
                     RIRITQPVESNAVFCTLPRERVAAVQSRFFFYVWNEETSEVRLMTSFDTTEEDVRGLV
                     EVIREAVS"
     gene            complement(4360..>5008)
                     /locus_tag="VD968_12505"
     CDS             complement(4360..>5008)
                     /locus_tag="VD968_12505"
                     /inference="COORDINATES: protein motif:HMM:NF013377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004555 - alpha,alpha-trehalase activity
                     [Evidence IEA];
                     GO_process: GO:0005991 - trehalose metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="trehalase family glycosidase"
                     /protein_id="HYE15259.1"
                     /translation="LLYVYERDAARIMRTLGRARAARAWERRASERRERVNRLMWDER
                     DGLYYDYNFISREVRRYPFVTTLYPLWAGVATEGQAARVVSNLRLFERAGGLQTSTNR
                     SGSQWDAPYGWAPMQLIAVEGLRRYGFRAEAERVSVNFLSLVLKEFVEHNTIVEKYDV
                     ERRTSTLGAGLRFGYTSNEIGFGWTNAAFTELYARLPANERPKVLEAGGLPVPSR"
BASE COUNT          754 a         1659 c         1724 g          871 t
ORIGIN      
        1 gccgtgaacc cggggttctt ccaaagcatg cgcgccgcgt agcgcacgtc ctgccagaat
       61 gtgctcatct ctccacccct cggaagagag gctagacgct ggaggctaga tgctggtaaa
      121 agcagaactg tttttaaata gcatctagca cccggcgtcc ggcctctaga gtttgaaccc
      181 gctctcctcg agctcctctt cggccctcgg ctcgtgcgtc tcctcgacga cctggccgtc
      241 gaagaggtgg aaggtgcggt cggcgtactt ggcgtagcgc gggtcgtgcg tgaccatgca
      301 gatggtggcg ccgccggcgt gcagctctcg caggaggttc atgacggcct cgccattggt
      361 ggagtcgagg ttgcccgtcg gctcgtctgc gagcaggatg gaggggttgc cggcgacggc
      421 gcgcgcgacc gcgaccctct gctgctggcc gccggagagc tgcgaagggt agtgcttcat
      481 gcggtgcgac atgccgacct tgaggagcgc ctcctcgacg cgcccgcgcc gctcggccga
      541 ggtcatgtcg cggtaggtca ggggcagttc gacgttctca tagacattca agtcgccgat
      601 gaggttgaac gcctggaaga tgaagcctat ttcgcggttg cgtatgcgcg cgcgctccga
      661 gagcgagagg ttggctacgg gcgtgccgtt gaggacgtac tcgccctcgg acggcgagtc
      721 gagcaggccg agtatcgaga gcagcgttga cttgccgcag cccgacgggc cggctatcga
      781 gacgtactgc cccttctcga tttcgaggtg gatgcctgag agcgcgtgcg tctcgacctc
      841 gtccgtgtag aagaccttct tcacgccgtc aagccgcact aggggctcgg ttgatgcgct
      901 catctgtgtt cctttcgtgg ctaagagtta ccgtcagtcc agacgcaggc ggtcaacgcc
      961 gtcccactgc tgagtgtcgg agagaatgac cgtgtcgcct tcgctcaggc cctcgagaat
     1021 ctcgacggtg ttgacggagg cgcggcccaa acgcacgggg acgcgcacgg cttcgcgccc
     1081 gtccgcgctc aggcggaaga gcgtgacgga ggactgcgcc ccgcccgacg cgggcctcga
     1141 cgtgtagagc acgttgtcta aacgttcgag ctcgatggtg ccgtcaacgc tcaggtcggg
     1201 gcgcgcgccc gcgggcaggc ccccttcgag acgaacgtca acgagcacgg tgccgttctg
     1261 caccgccggg tctatgcgcg ccacggtgcc ggggacgact cccgcgccgc gcgtgtcaac
     1321 gtcggcgcgc tggccgaggc tcacgtcctt cgcctgcgtc tcggggattt gcagcacggc
     1381 cttcaggctc gaagggtctg cgacgcgcgc gatgttcgtc cccggcgtta tctgctggcc
     1441 gacctctacg gtcacctgct gcaacacgcc gttcgtcccg gcgcgaacca ggagcgaggc
     1501 gacctgctcc cggttcaaac gaagctgcgc gcgcaactgt tcaatgcgcg cctgctgcgc
     1561 ggccacctgc gcggcagttg actcctgcgc ggagcccgcg cgcttgcgct cgatctcgag
     1621 ccggttcgca agctgctcga ccctcacgcg cgagatgcgc aaagtgatgg ccggcaccag
     1681 gccttctttg gcaagctcct cgtcggtgtc gaactgaatc ttggcctgct tgtactcgga
     1741 ctctatctgc gcggtcgcgg cctgctggct catgcgctcg ctttcgagtc gcgcgcgaag
     1801 gttgttgagg tcggcctcgg ccgactttat ccggtactca acgtccacgg ccgactgcct
     1861 cagctccggg ttggagagct caacgagtac ggagccggcc gagacctgct cgccaggctt
     1921 tgcgaatatc tgctcgacgc gcccctcgac gggcgcggcc acctggcgaa tctcctcggg
     1981 gacgagcgtg cctatgccgc gcacctgccg gagcatctgc ccgcgcttga cctgccccgt
     2041 gtagagggtg gagcgcgcga cgctcggcgc ggccggcttc aggcgcgaca gcccgtaggt
     2101 aatgagcacg gccgcgagca cacaggcgga ggcgtagagg gcgagcctca atcggcgctt
     2161 gttcttctgg gtggggcgtt ttacgtccat agcgtgcgag gggtcactcc gtttctgatt
     2221 ccgcccgggc gactagacaa cccccgtacc acgagcccaa gcgccagaga atgggtgttt
     2281 tcaaaggccg gggccgtgcg cgggccgggg cgggggccgc gcggcgtgcc cgtttccgaa
     2341 aaccccagtc ccaaaatcga aaatcggcgc cctcgcgaat tgacgaaacc cggcgggggc
     2401 ggcgggccgt attagaagct gtttgttcgg ccggcggcgg gtgcgcgaag agcgccccac
     2461 ttccccagct ccgactacga cggagggcgc tcatgcagtg gctatacctc gcgacagccg
     2521 tgctcggcgc ggtgctgccg ctctcgtttc tgttcccctt cctcgcggcg cacgggcccg
     2581 acttgccgct cctcttccgg cagctcttcc agaacaacgt ctcttccttc ttcggcgtgg
     2641 acgtgatcgt ctcggcagcg gtcgtcgccc tcttcgtcta ttccgagggg cgcatgcgcc
     2701 gcatgcgccg cctctgggtt tacatcgcct gcctgcttct ggtcggcgtg tcgtttgcgc
     2761 tcccgctctt cctcttcgcg cgcgagcgca gtattgaagc ggaggcgagc gcgcgttgag
     2821 gcgggtgctg gtcataggct cgggcggggc gggcaagtcc acgctctccg cgcggctggg
     2881 cgaggcgctc ggcctcgaag tcctgcacct ggacgctcac cactggcggg cgggctggac
     2941 tgagccgccg aaggaggagt ggcagaggat agtcgccggc ctcatcgagc gcgactcgtg
     3001 ggtgatggac ggtaactaca gcgggactct ggagatgagg atggaggcgt gcgacacggt
     3061 cgtcttcctc gacctgccgc gcacgctctg cctctggcgc gtgataaaga ggctgctgac
     3121 ctaccgcggc cgcccgcgcc ccgacatggc cgagggctgc ggcgagaagc tcgacctgaa
     3181 gttcctgcgc tgggtctggg attacccgga gaggactcgg cccgtggtgc tggagctgat
     3241 cggggctcac gggcgcgaca agaagatttt ccacctgcgc tcgcgcgcag aggtcgcgga
     3301 gtttctccgc gaagtcggcg gggcttaact cacggcctcc ctgataactt cgaccagccc
     3361 gcgcacgtcc tcctcggtcg tgtcgaagga ggtcatcagt cgcacctccg aggtctcctc
     3421 gttccagacg tagaagaaga agcgcgactg gacggcggcg acgcgctcgc gcgggagcgt
     3481 gcagaagact gcgttggact cgacgggctg cgtgattcgg attcgcggta tgcgctcgag
     3541 ctccgaggcg agcgcccgcg ccatccggtt tgcgtgcgcg gccgtctcca accagaggcc
     3601 gtcggccagc agcgcgttga actgcgcggc gacgaagcgc atcttcgagg ggagctgcgc
     3661 accctgcttg cgcacgaact cgaagccgcg cgcaagctcg ggccggagga agacgacggc
     3721 ctcgccgtag agcatcccgt tcttcgtccc gccgaacgaa agcgcgtcca cgcccgccgt
     3781 caactccccg agcggaacgc ccaggtgcgc ggcggcgttc gctatcctcg cgccgtcaac
     3841 gtggagcagc agcccgcggg cgcgggcgag cccggctagg cgtcccatct cttcgacggt
     3901 gtaaacggtg ccaagctcgg tcggctgcga gacggagacg acgcgcggct gcacgtggtg
     3961 ctggtcgccc acgcgcccga gcagcggctc gacaagcgcg ggcgtgagct tgccgtcggg
     4021 cgtcggaacg tcgaggagct tgcagcccgt gaacttctct ggcgcgccac actcgtcaac
     4081 gtttatgtgc gcggtcgcgg cgcacacgac ggcctcgtgc ggccgagtca tggcttggag
     4141 ggcgagggcg ttcgcgcccg tcccgccgaa gacgaaaaag acctcggccg agtcgccgaa
     4201 gagcgcgcgg aacttacgtt tggcctcctc tgtgaacggg tcgtcgccgt atgcgacgac
     4261 gtggccggcg gcgttcgcgg acgccacggc ctccatcacg cgcgggtgcg cgcccgcgtt
     4321 gttgtcgctc gcaaatcccc tcttcggtct catggcgatc tagcgggagg ggacgggcag
     4381 gccgcccgcc tccaagacct tcggcctctc gttggcgggc aggcgcgcgt aaagctccgt
     4441 gaaggccgcg ttcgtccagc cgaagcctat ctcattcgac gtgtagccga agcggagccc
     4501 cgcgccgagc gtggacgtgc gccgctcgac gtcgtacttc tcgacgatgg tgttgtgctc
     4561 gacgaactcc ttgagcacga gcgagaggaa gttgaccgag acgcgctcgg cctccgcgcg
     4621 gaagccgtag cggcgcaggc cctcaaccgc gatgagctgc atcggcgccc agccgtaggg
     4681 agcgtcccac tggctgccgg agcggttcgt gctcgtctgc aagccgcccg cgcgctcgaa
     4741 caggcggagg ttggagacga cgcgcgccgc ctgcccctcc gtcgcgacgc cggcccacag
     4801 agggtagagg gtcgtcacga acgggtagcg cctgacctcc cgcgagatga agttgtagtc
     4861 gtagtagagt ccgtcgcgct cgtcccacat cagacggttg acgcgctcgc gcctctccga
     4921 agcgcggcgc tcccacgcgc gcgcggcgcg cgcgcggccg agcgtgcgca tgatgcgggc
     4981 cgcgtcgcgc tcgtagacgt agagcagc
//
LOCUS       DASPKR010000466         2237 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_845180, whole genome shotgun sequence.
ACCESSION   DASPKR010000466 DASPKR010000000
VERSION     DASPKR010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2237)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2237
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_845180"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..537
                     /locus_tag="VD968_12510"
     CDS             <1..537
                     /locus_tag="VD968_12510"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HYE15260.1"
                     /translation="SLIMLDIDHFKGVNDTYGHDAGDVALRLIAGALREEVRGVDTAA
                     RYGGEEFAVILPQAGPEGALVVAERLRARIESTQIPGVGHVTASLGVATFPIHASSRD
                     LLVTTADRALYQAKHTGRNRVSSPRDLPPEELLEATAPHAPEAADAPGRRPAPGEADD
                     AAPDARPEAQEVIFPLNI"
     gene            577..>2237
                     /locus_tag="VD968_12515"
     CDS             577..>2237
                     /locus_tag="VD968_12515"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE15261.1"
                     /translation="MALRRESRIIGVARFVKLGMDDLRKFFRYFRPYRGSLAAGVLCI
                     FASVVIGLLVPVLVGRAVDDLGSGVTWAKITRYALLILAVSAVSGAFLFLQRRILIGM
                     SRHVEYDLRQDFYAHLQRQPLSFFHANRTGDLMARATNDLAAVRQLAGPMIMYTLQTV
                     FVVVIILPLMLRISVRLTLLLMVTMPLVSLTVKYFGQQVHVRFEKIQDFFAQMSARAQ
                     ENFSGVRVVRAYAQEGAEIAVFNSLNREYAERNLQLVRISAVMRPLLTFVIGTGYVLI
                     IWYGGMLAVRGTISTGQVVEFLLYLTRLIWPLIALGYVVNLYQRGTASLKRMNAVFAV
                     SPSIADAPGVKEQPPVRGEIEFRDLTFAYGEHSPPVLKDINLRIEAGQTVAFVGRTGS
                     GKSTLVNLIPRVVDAPPGTVFVDGVSVRDYPLAQLRASIGYVPQETFLFSDTLAENVA
                     FGVGGAGRADIEWAAEIAGLSDDVRSFPDGFDTLVGERGITLSGGQKQRAAIARAVLR
                     QPKILILDDALSSVDTYTEEKILARLRGVMRERTSIIVSHRISTVR"
BASE COUNT          349 a          819 c          698 g          371 t
ORIGIN      
        1 tcgctcatca tgctcgacat agaccacttc aagggcgtca acgacactta cggccacgac
       61 gcgggcgacg tggcgctcag gctgatagcg ggcgcgctgc gcgaggaggt gcgcggcgtg
      121 gacacggccg cgcgctacgg cggcgaggag ttcgccgtca tcctgccgca ggccggcccc
      181 gagggcgcgc tagtcgtcgc cgagcgccta cgcgcccgca ttgagagcac gcaaatcccc
      241 ggcgtcggcc acgtcacggc ctcgctcggc gtcgcgacct tccccatcca cgccagctcg
      301 cgcgacctgc tggttacgac cgccgaccgc gctctctacc aggctaagca caccggccgc
      361 aaccgcgtca gctcgccacg agacctcccg cccgaagagc tgctcgaagc cacggcgccg
      421 cacgcccccg aagccgccga cgcgccgggc cgccggcctg cgccgggcga ggccgacgac
      481 gccgcgcctg acgcgcggcc cgaggcccaa gaagtcatct tccccctgaa catctagggc
      541 tccgcccacc cgcttcacat cctccggcgg ccgcgtttgg ctttacgacg ggaatcgcgc
      601 atcataggcg tcgcccgttt cgtaaagctc ggcatggacg acctccgtaa attcttccgc
      661 tacttccggc cgtacagggg ctcgctcgcc gcgggcgtcc tctgcatatt cgcgtcggtc
      721 gtcatagggc tgctcgtccc cgtgctggtg ggccgcgcgg ttgacgacct cggctcgggc
      781 gtcacgtggg cgaagataac gcgctacgcg ctcctcatac tcgccgtgag cgccgtgagc
      841 ggcgccttcc tcttcctaca gcgtcgcata ctcataggca tgtcgcgcca cgtcgagtac
      901 gacctgcgcc aggacttcta cgcgcacttg cagcggcagc cgctctcctt cttccacgcg
      961 aaccgcacgg gagacctcat ggcgcgcgcg acgaacgacc tggcggcagt gcggcagttg
     1021 gccgggccga tgatcatgta cacgctccag accgtcttcg tcgtggtcat catccttccg
     1081 ctcatgctga ggataagcgt gcgcctcacg cttttgctga tggtgacgat gccgctcgtc
     1141 tcgctcacgg tgaagtactt cgggcagcag gttcacgtcc ggttcgagaa gatacaggac
     1201 ttcttcgcgc agatgtcggc gcgggcgcag gagaacttct cgggcgtgag ggtcgtgcgc
     1261 gcctacgcgc aggagggcgc cgagatagcc gtcttcaact cgctcaaccg cgagtacgcc
     1321 gagcgcaacc ttcagctcgt ccgcatctcg gccgtgatgc gcccgctgct caccttcgtc
     1381 atcggcaccg gctacgtgct catcatctgg tacggcggca tgctcgccgt gcgcggcacg
     1441 atttcgacgg ggcaggtcgt cgagttcctg ctctacctga cgcggctcat ctggccgctc
     1501 atcgcgctcg gctacgtcgt caacctctac cagcgcggca cggcgagcct caagcgcatg
     1561 aacgccgtct tcgccgtgag cccctctatc gcggacgcgc ccggcgtcaa ggagcagccg
     1621 cccgtgcgcg gcgagatcga gttccgcgac ctcaccttcg catacggcga gcactccccg
     1681 ccggtgctca aagacataaa cctccgcata gaggcggggc agaccgtcgc cttcgtcggc
     1741 cggacgggct cgggcaagtc aacgctcgtc aacctgatac cgcgcgtcgt ggacgcgccg
     1801 cccggcactg tcttcgtgga cggcgtttcg gtgcgcgact acccgctcgc gcaactgcgc
     1861 gcctcgatag gctacgtgcc gcaggagact ttcctcttca gcgacacgct ggccgagaac
     1921 gtagccttcg gcgtcggggg cgcgggccgc gccgacatcg agtgggccgc cgagatagcc
     1981 ggcctctccg acgacgtgcg ctcgttcccc gacggcttcg acacgctcgt cggcgagcgc
     2041 ggcataacgc tctcgggcgg gcagaagcag cgcgcggcaa tcgcccgcgc agtcctccgc
     2101 cagcccaaga ttctcatact cgacgacgcg ctctcctccg ttgacaccta cacggaggag
     2161 aagatactcg cccggctgcg cggcgtgatg cgcgagcgga cgagcataat cgtctcgcac
     2221 cgcatctcga ccgtgcg
//
LOCUS       DASPKR010000467         4584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_845290, whole genome shotgun sequence.
ACCESSION   DASPKR010000467 DASPKR010000000
VERSION     DASPKR010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4584)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4584
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_845290"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..275
                     /locus_tag="VD968_12520"
     CDS             <1..275
                     /locus_tag="VD968_12520"
                     /inference="COORDINATES: protein motif:HMM:NF024822.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4112 domain-containing protein"
                     /protein_id="HYE15262.1"
                     /translation="MAANIAVDYLLGAVPVLGDFFDVAWKSNQMNVELIRRRAAVEPG
                     EAKRGRAADWLFLAVIVMGLLALLAGSIAVSLWLLAKLFGGLGSLF"
     gene            complement(358..861)
                     /locus_tag="VD968_12525"
     CDS             complement(358..861)
                     /locus_tag="VD968_12525"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HYE15263.1"
                     /translation="MPMRIGTEMPPFDGATEWFNATAARAAVEVKGRPTLVHFWSVSC
                     GLCKENMPRVAEWRDGRAAEGLRVVAVHMPRYEADTDVEAVREAVATYNITEPCAVDN
                     QHALRDAFKNEQGFVPAYYLFDAEGKLRCFAAGERGLSMVEPTLERVLTAFNAAGAKE
                     KEAAAQS"
     gene            complement(931..1476)
                     /locus_tag="VD968_12530"
     CDS             complement(931..1476)
                     /locus_tag="VD968_12530"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019258276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HYE15264.1"
                     /translation="MAESMVGKPAPDFDMPSTKNIEKLNENVKLSDYRGKWVVLLFYP
                     LDFTFVCPTELTTFSDRIEDFRGIGAEVIGVSTDSVHSHRAWLRTPRGQNGVEGLRYP
                     LASDITKQVSRDYGVLIEEKGIALRGLFVIDPEGILRYAVIHDLNVGRSAEETIRVIQ
                     ALQTGGLCQAEWRPGQETLKV"
     gene            complement(1535..1960)
                     /locus_tag="VD968_12535"
     CDS             complement(1535..1960)
                     /locus_tag="VD968_12535"
                     /inference="COORDINATES: protein motif:HMM:NF013629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HYE15265.1"
                     /translation="MAAGRGDQGGGGGGRVLTPQRRAVLEVVEGSCEHLTANEIYEAA
                     RRRLPSISFATVYNSLKYLKGAGLVREINFGKGSSRYDRETGRHDHALCSRCGRLVDF
                     DLEETPQLMRAAARRSRFKPESIQLTLVGLCPDCQKPGV"
     gene            complement(2039..3109)
                     /locus_tag="VD968_12540"
     CDS             complement(2039..3109)
                     /locus_tag="VD968_12540"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE15266.1"
                     /translation="MASAETVFLTGFPGFIAGRLVERLARDGARFLLLVQPAFAERAR
                     ADVARITERTGAPADGFRIIEGDITREGLGMSAADSEAARREATVVFHLAAVYDLGVE
                     RGLAERVNVGGTRNVNHFARTLTSLRRYHYVSTCYVAGMRTGVILETELRHAAGFRNH
                     YEETKYLAEVEVDALKGELPVTIHRPSVVCGDSRTGETAKYDGVYYLINYLRMWPGPL
                     SLANIGNDDVRLNVVPVDFVVEAMAALARDDAAAGATVQLADPEPLTTRELFDTIARN
                     LAGRDSLFTVPAPLVRASLKLPPSEAFTGLPRVGVPYFFLRQTYDTTIASQLLAPHGV
                     RCPRFPDYVAALLDFVERHPKL"
     gene            complement(3112..3879)
                     /locus_tag="VD968_12545"
     CDS             complement(3112..3879)
                     /locus_tag="VD968_12545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15267.1"
                     /translation="MGFALHAAAPRRLLSAASLLLLAAHAAAAQRTFEVRRGSAEYDM
                     TVRVEDTRPGAARADLPEAFSRKAQIRIHRKGARSPFQVINLPNIEVYEESLAYDAET
                     EAAPRRLYEEEYSFVFDDFNFDGRQDFAVCNGREGGYGGPSYTVFLFDRRAKRFAESR
                     RLSRLTEAPYLGLFFPDPKTKRLVAHSKSGCCYHATEKYAVVNSRPVLVEKVVEDATL
                     EGGGGEGFVVVTTRKRVGGRWVVRRRKEKIEEGNAPD"
     gene            complement(3888..>4584)
                     /locus_tag="VD968_12550"
     CDS             complement(3888..>4584)
                     /locus_tag="VD968_12550"
                     /inference="COORDINATES: protein motif:HMM:NF013079.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M17 family metallopeptidase"
                     /protein_id="HYE15268.1"
                     /translation="GKGITFDTGGISIKHGLDMYEMKSDMAGGAAALGALRALAQLKP
                     NRRLAAVVPAAENMPSGNSIKPGDVVRTLAGYTIEVVDTDAEGRLVLADGIAYAKSLG
                     ASRIVDLATLTGSIIIALGTHRAGLFANDDEWASRVEAAAARAGEPVWRMPVSDDYKK
                     KIESPIADFKNYGGKPDAVAAALLLSKFAGGTPWAHLDIAGTAWLEEAQPHAPKGATG
                     AGVRTLVELVSGG"
BASE COUNT          706 a         1534 c         1565 g          779 t
ORIGIN      
        1 gcatggcggc aaacatagcc gttgactacc tgctcggcgc agtccccgtc ctgggcgact
       61 tcttcgacgt ggcgtggaag tcgaaccaga tgaacgtcga gctgatacgg cgccgcgcgg
      121 ccgtcgagcc cggcgaggcc aagcggggcc gcgccgccga ctggctcttc ctcgccgtca
      181 tcgtgatggg gctgctagcc ctgctcgccg gctcaatcgc agtaagcctc tggctgctcg
      241 ccaaactctt cggcggcctc ggctcgctgt tctagacgag taggattaaa gcagagggcg
      301 cggagaggat taactcttct ccgcgccctc cgcgctcaaa accgcctctc gcgcccttca
      361 gctttgcgcg gcggcctcct tctccttggc gccggccgcg ttgaaggccg tgagcacgcg
      421 ctcgagcgtg ggctcgacca tgctcaggcc gcgctcgccc gcggcgaagc agcgcagctt
      481 cccctcggcg tcgaaaaggt agtacgcggg gacgaacccc tgctcgttct tgaaggcgtc
      541 gcgcagcgcg tgctggttgt caacggcgca cggctcggtg atgttgtagg tggcgaccgc
      601 ctcgcgcacg gcctcaacgt cggtgtcggc ctcgtagcgc ggcatgtgga cggcgacgac
      661 tctcaggccc tcggccgcac ggccgtcacg ccactcggcc acgcgcggca tgttctcctt
      721 gcacagcccg cagctcacag accagaagtg gacgagcgtc ggccggccct tcacctccac
      781 ggcggcgcgc gccgccgtcg cgttgaacca ctcggtcgcc ccgtcgaagg gcggcatctc
      841 cgtcccgatc ctcatcggca tgataagtac ctcaaaaagg tctcgggcgc cgggaaagag
      901 gttatcttcc cggcgcccgt cgcccgttct tcagaccttg agcgtctcct ggccgggccg
      961 ccactcggcc tggcagaggc cgccggtctg caaagcctgt atgacgcgta tggtctcctc
     1021 ggccgagcgg ccgacgttca ggtcgtgtat gacggcgtag cgcaggatgc cctcggggtc
     1081 aatgacgaag aggccgcgca gggcgatgcc cttctcctcg atgagcacgc cgtagtcgcg
     1141 cgacacctgc ttcgtgatgt cggaggcgag cgggtagcgc aggccctcca ccccgttctg
     1201 cccgcgcggc gtgcgcagcc acgcgcggtg cgagtggacg gagtcggtcg agacgccgat
     1261 gacctcggcc cctatgccgc ggaagtcctc gatgcggtcg ctgaatgtcg tcagctcggt
     1321 cgggcagacg aaggtgaagt cgagcgggta gaagagcagc acgacccact tgccgcggta
     1381 gtcggatagc ttcacgttct cgttcagctt ctcgatgttt ttagtcgagg gcatgtcgaa
     1441 gtccggcgcc ggcttgccca ccattgattc tgccatctct tacgattcct ccgttgatga
     1501 agtgaagtta gaaaaccctt tgtcagacag cccgtcagac gcccggcttc tggcagtcgg
     1561 ggcacaagcc aacgagcgtc aactgtatgg actccggctt gaagcgcgag cggcgcgcgg
     1621 ccgcgcgcat aagctgcggg gtctcctcca ggtcgaagtc cacgaggcgg ccgcagcgcg
     1681 agcagagggc gtggtcgtgg cggccggtct cgcggtcgta gcggctcgac cccttgccga
     1741 agttgatctc ccgcacgagg cccgccccct tcaaatactt gagcgagtta tagacggtgg
     1801 cgaagctgat cgagggcagc cgacgccgcg ccgcctcgta aatctcgttg gccgtcaggt
     1861 gctcgcagga gccctcgacg acctcgagca cggctcggcg ctggggcgtc aacacacgcc
     1921 cgccgccccc gccgccctga tctcctctgc ccgccgccat gaattgtctt ccggttgaaa
     1981 gtggaattag aataattcta gatcgcgcgg ctgtcaagcg cccgccgggg cgggcgcttt
     2041 agagcttcgg gtgacgctcg acgaagtcga ggagggcggc gacgtagtcg gggaagcggg
     2101 ggcagcggac gccgtgcggg gcgagcaact gcgaggcgat agtcgtgtcg taggtctgtc
     2161 tgaggaagaa gtaggggacg ccgacgcgcg gcaggccagt gaaggcttct gagggcggga
     2221 gcttgagcga ggcgcgcacg aggggcgcgg ggacggtgaa gagcgaatcg cggcccgcca
     2281 ggttgcgcgc gattgtgtcg aacagctcgc gcgtggtaag cggctcgggg tctgcgagct
     2341 ggacggtggc gcccgcggcc gcgtcgtcgc gcgcgagcgc ggccatcgcc tccacgacga
     2401 agtcaacggg gacgacgttg aggcgcacgt cgtcgttgcc gatgttcgcg agcgacagcg
     2461 gccccggcca catgcgcagg tagtttatga ggtaatagac gccgtcgtac ttcgccgtct
     2521 cgcccgtgcg cgagtcgccg cagacgaccg aaggccggtg tatcgtgacg ggaagctccc
     2581 ccttgagcgc gtcaacctcg acttcggcca gatacttcgt ctcctcgtag tggttgcgga
     2641 agcccgccgc gtggcgcagc tccgtctcga gtatgacccc ggtgcgcatc cccgcgacgt
     2701 agcaggtcga gacgtagtgg tagcgccgca gcgacgtgag cgtgcgggcg aagtggttga
     2761 cgttgcgcgt gcccccgacg ttgacgcgct cggccagccc gcgctcgacg ccgaggtcat
     2821 agacggcggc gaggtggaaa acgaccgtgg cctcgcgcct cgcggcctcc gaatccgcgg
     2881 ccgacatccc gagcccctcg cgcgtgatgt cgccctcaat gatgcggaag ccatcggcgg
     2941 gcgctcccgt cctctccgtt atccgcgcga catcggcgcg cgcccgctct gcgaaggcag
     3001 gctgcacgag caacaggaag cgcgcgccgt cccgcgccag tcgctcgacg agccggccgg
     3061 cgatgaagcc ggggaagccc gtgaggaaaa ctgtctccgc ggacgccatc cttaatcggg
     3121 cgcgttgccc tcctcgatct tttccttgcg cctgcgcacg acccacctgc cgcccaccct
     3181 cttcctcgtc gtcacgacca cgaagccttc gcccccgccg ccctcgagcg tcgcgtcctc
     3241 gacgaccttc tccacgagga cgggccggct gttcaccacc gcgtacttct ccgtcgcgtg
     3301 gtagcagcag ccggacttcg agtgcgccac gagccgtttc gtcttcgggt cggggaagaa
     3361 gaggccgagg tacggcgcct cggtgagcct cgaaagcctc ctgctctccg cgaacctctt
     3421 cgcccgcctg tcgaaaagga agacggtgta ggaggggccg ccgtagccgc cctccctccc
     3481 gttgcagacg gcgaagtcct gcctgccgtc gaagttgaag tcgtcgaaga cgaagctgta
     3541 ctcctcctcg tagagccggc gcggcgcggc ttcagtctcg gcgtcgtagg ccagcgactc
     3601 ctcatagact tctatgttcg gcaggtttat cacctggaaa ggggagcgcg cccccttcct
     3661 gtggattcgg atttgcgcct tccgactgaa cgcctccggg agatcggcgc gggccgcgcc
     3721 ggggcgcgtg tcttcgacgc gcacagtcat gtcgtactcg gccgagcccc gccgaacctc
     3781 aaacgtcctc tgcgcggccg cggcgtgggc ggcgagcagg aggagcgacg ccgccgagag
     3841 aagtctgcgc ggtgccgcag cgtgcagagc gaaacccata agacttttta acctcccgac
     3901 acgagctcga cgagcgtgcg gacgccagcc ccggtcgcgc ccttcggggc gtggggctga
     3961 gcctcttcga gccaggccgt gccggcgatg tcgaggtggg cccaaggggt tccgcccgcg
     4021 aacttgctga ggaggagggc ggctgcgacg gcgtcgggct tgccgccgta gttcttgaag
     4081 tctgcgatgg ggctctcgat cttctttttg tagtcgtcgg agacgggcat gcgccagacg
     4141 ggctcgcccg cgcgggcggc ggcggcctcg acgcgcgagg cccactcgtc gtcgttcgca
     4201 aacagcccgg cgcggtgagt gccgagcgcg atgatgatgg agccggtcag cgtcgcgagg
     4261 tcaactatgc gcgaggcgcc gagcgacttc gcgtaggcga tgccgtcggc gagcaccaga
     4321 cgcccttcgg cgtcagtgtc cacgacctct atcgtgtagc cggcgagcgt gcgcacaacg
     4381 tcgccgggct ttatcgagtt gcccgagggc atgttctctg ccgcggggac gacggccgcg
     4441 agccggcggt tcggtttgag ctgcgccagc gcgcgcaacg ccccgagcgc ggcggcgccg
     4501 cccgccatgt cggacttcat ctcgtacatg tcgaggccgt gcttgatgga gatgccgccc
     4561 gtgtcgaagg tgatgccctt gccg
//
LOCUS       DASPKR010000468         2132 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1880255, whole genome shotgun sequence.
ACCESSION   DASPKR010000468 DASPKR010000000
VERSION     DASPKR010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2132)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1880255"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(203..1717)
                     /locus_tag="VD968_12555"
     CDS             complement(203..1717)
                     /locus_tag="VD968_12555"
                     /inference="COORDINATES: protein motif:HMM:NF012640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HYE15269.1"
                     /translation="MIGLQPATFEEFEAEAARGNVVPVARTVLADLQTPVGAFMRVAG
                     SEPYAFLLESVEGGERIARYSFIGAAPELIVRGRGDSTVLERAGGGAEELAGVRAIDY
                     LRDRLRRRRLARRAGLAPMAGGAVGYLAYDAARWFEPKLAADLNPAPDGDDAVFMLFR
                     TVLAFDRARQQIEITSVVMTDEAGGDSARLKSLYEAAAEETARIERLLNGPAAPLTTV
                     PPSSTPEVAGPFSSNWARGDFEGGVRRVKEHIAAGDCYQAVLSQRFTKRVAVEPLQIY
                     RALRATNPSPYMYFLRLGGEAVVGASPEMLVRCRGQRLDYRPIAGTRRRGVTETEDWL
                     LGEELRADEKEVAEHTMLVDLGRNDLGRVADFGSVEVGELMTVERYSHVQHLVTHLRA
                     RLRDGLDRFDALAACFPAGTVTGAPKVRAMQIVAGLEPQARGIYAGAVLYADYADNLD
                     SCIAIRTIVLRNSTAEVQAGAGIVADSAPEREYEETVNKARALLDAIELAERGL"
     gene            complement(1754..>2132)
                     /locus_tag="VD968_12560"
     CDS             complement(1754..>2132)
                     /locus_tag="VD968_12560"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE15270.1"
                     /translation="RRGQILNISATLHYVGTPYQLHVSAAKAGVDALTRNLAVEWGRH
                     GIRVNAIAPGPIEDTEGMKRLVPPDVKERLRRSVPLGRFGRIRDVETCAVFLCSDAAS
                     FINGAVIVVDGGHWLNNSTLGAG"
BASE COUNT          340 a          722 c          736 g          334 t
ORIGIN      
        1 aagaaatcaa tctccttgaa ggcgtagccg cgcaggaaaa tctcgcgccg ggcggtgtcc
       61 ggcccaatgt cgcggtcgcg gttcccgccc ccgccgcagg cgagaaggca gaagccggaa
      121 agcagaaagc agaaagcaga aagcagtaga aaccctctct tccttctatc ttccgtcttc
      181 cgtcctccgc cttctgcctt tttcataacc cacgctcggc cagttctatc gcgtcgagga
      241 gcgcacgcgc tttgttgacc gtctcctcgt actcgcgctc gggcgcggag tcggcgacta
      301 tcccggcgcc ggcctgaacc tccgccgtag agtttcgcag gacgatggtg cgtattgcaa
      361 tgcacgagtc gaggttatca gcgtagtctg cgtatagcac ggcccccgcg tagatgccgc
      421 gcgcctgggg ctcgaggccc gcgactatct gcatggcgcg aactttcggg gcgcccgtga
      481 cggtgcctgc cgggaagcac gcggcgagcg cgtcgaagcg gtcgaggccg tcgcgcaggc
      541 gcgcgcgcag gtgagtgact aagtgctgga cgtgtgagta gcgctcgacc gtcatcaact
      601 cgccgacctc gacggagccg aagtcggcga cacggccgag gtcgttgcgg ccgaggtcaa
      661 cgagcatcgt gtgctcggcc acctccttct cgtcggcgcg aagctcttcg ccgagcagcc
      721 agtcttcggt ctcggtcacg ccgcgacgcc gcgtgccggc gatgggcctg tagtctagcc
      781 gctgcccgcg gcagcgcacg agcatctccg gcgaggcgcc gacgaccgcc tcgccgccga
      841 gccgcaagaa gtacatgtac ggcgaagggt tcgtcgccct gagcgcgcgg taaatctgta
      901 gcggctcgac ggcgacgcgc ttcgtgaagc gctgcgacag cacggcctgg tagcagtcgc
      961 cggccgcgat gtgctccttg acgcggcgca cgcccccctc gaaatcgccg cgcgcccagt
     1021 tcgacgagaa tgggcccgcg acttcaggcg ttgacgacgg cggcaccgtc gtcaacggag
     1081 cggcaggccc gttgagcaac cgctctatcc tcgcagtctc ctcggccgcg gcctcgtaaa
     1141 ggcttttgag gcgcgcgctg tcgccgcccg cctcgtccgt catcacgacc gaggttatct
     1201 cgatctgctg gcgcgcgcgg tcgaaggcga gcaccgtgcg gaagagcatg aagacggcgt
     1261 cgtcgccgtc gggcgcggga ttgaggtcgg cggcgagctt cggctcgaac cagcgcgcgg
     1321 cgtcgtatgc gaggtagccg acggcgccgc ccgccatcgg cgccagcccc gcgcggcgcg
     1381 cgagcctgcg cctgcgcagc cggtcgcgca ggtagtcaat cgcgcggacg cccgcaagct
     1441 cctcggcccc gccgcccgcg cgctcaagga cggtagagtc gccgcggccg cggacgatta
     1501 gctcgggcgc ggcgccgatg aaggagtagc gcgctatccg ctcgccaccc tcgacggatt
     1561 cgagcaggaa ggcgtaaggc tccgagccgg cgacgcgcat gaaggcgccg acgggcgtct
     1621 gcaagtccgc gaggacggtt cgcgccacgg ggacgacgtt gccgcgcgcc gcctcggcct
     1681 cgaactcctc gaacgtcgcc ggctgtaaac cgatcatgtg aagcgagtgg gttagcgaag
     1741 agaggggagt ctgtcagccg gcgccgagcg tcgagttgtt gagccagtgg ccgccgtcaa
     1801 cgacgatgac ggcgccgttg atgaagctcg ccgcgtcgga gcacaagaaa acggcgcagg
     1861 tctctacgtc gcgtatgcgc ccgaagcggc cgagcgggac tgagcgccgc agccgctcct
     1921 taacgtccgg cgggactagg cgcttcatcc cctcggtgtc ttcaatcggc cccggcgcga
     1981 tggcgttcac gcgtatcccg tggcggcccc actccacggc gaggttgcgc gtcagggcgt
     2041 caacgccggc cttcgccgcg gagacgtgta gctggtacgg cgtcccgacg tagtggagcg
     2101 tggcgctgat gttgagaatc tggccgcgcc gt
//
LOCUS       DASPKR010000469         2931 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1103754, whole genome shotgun sequence.
ACCESSION   DASPKR010000469 DASPKR010000000
VERSION     DASPKR010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2931)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2931
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1103754"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            290..1255
                     /locus_tag="VD968_12565"
     CDS             290..1255
                     /locus_tag="VD968_12565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15271.1"
                     /translation="MKLRILYHGHCFDGVASAAVFTRFYRSRRGGGLQVAYTPLMHTA
                     GDLFDERMFDGDENAIVDFKYSPSGRVTWWFDHHQSAFLTPEDEAHFRADRSGRKFWD
                     PESKSCTEFIARVASEEFGFADASLAPLVAWAHTIDGAFYESAAQPVELREPALQLMQ
                     VIENVPDEEFIEQIIRGLSERTLDEVASGEDVQRRFRPLLERHRETVELIRRKAAYSR
                     GVVTFDLADEGLAGFNKFIPYYICPETTYSVAVTRGPARAKISVGSNPFSPRPRRHNL
                     ASICERYGGGGHAVVGAVSYRPDEVERARETAREIVAELQEGFDG"
     gene            1354..2475
                     /locus_tag="VD968_12570"
     CDS             1354..2475
                     /locus_tag="VD968_12570"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HYE15272.1"
                     /translation="MTTNQKYLVLACDGGGIRGLITALLLEQLGPGLLGQVYLFAGTS
                     TGGILSLGLACGVPVAELVSLYETDGEQIFTKSQCLGGPGAQAAAAAALAPAQGAPVG
                     GIWTDILQYLAELICVKYDNAGLMGAVNSTLGGSAGATLSSLDRNVMVTTFQLYGNEP
                     NGAWGPLELHNIPNITDNPSASTKVIDAAMSTSAAPTYFPPYNHPAFGYCADGGVFAN
                     NPALLAVSKLIESGIPLESIWVLSLSTGNTVNSYPPSLINSVYAPASAFGPFFWLFPE
                     AQQSTQGTQQTYTPGMPLTSALFDGVSEVNDYQCSLVLPKGQYKRANVPLTAPVALDD
                     YSPQAIQAMRDAVSSYTGESGGEWAGIVSWINDNFPGGS"
     gene            complement(2561..>2931)
                     /locus_tag="VD968_12575"
     CDS             complement(2561..>2931)
                     /locus_tag="VD968_12575"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HYE15273.1"
                     /translation="VEILTEGMVRLGLLEGEVGKLIEEEGYKKFYMHRLGHYLGMDVH
                     DVGPYQTDGGEPRPVEAGIVMTVEPGIYVSETAEGVPEKYRGIGVRIEDDVLVTAEGH
                     LVLTDKAPKTIEEIEALMAR"
BASE COUNT          491 a         1060 c          889 g          491 t
ORIGIN      
        1 cggcggcgag ctcatcgagg ccgacgccga gcgcttcata cgcgagaagc tcggcctcgc
       61 cgagcaaagc tccgtcgagc cctgcgagaa caagaagccg tagcgtgccg gtgcgcgagc
      121 gtcaaaacct tactcaagac agtcagccga aacctctcag gcagtttctc ccgccccgcc
      181 ttcgcacccc gcgtgaaatt ctttccgcga gcacgttagc cgcgccgcgc gcgcgcctgc
      241 tattatgtcc tgctttctcc cacatcatat tttcgaccgc ttctgataga tgaaactacg
      301 catcctctac cacggccact gcttcgacgg cgtggcctcg gccgccgtct tcacgcgctt
      361 ctaccgctcg cgccgcggcg gggggttgca ggtcgcctac acgccgctca tgcacaccgc
      421 gggcgacctc ttcgacgaac gcatgttcga cggcgacgag aacgccatag ttgacttcaa
      481 gtactcaccc tccgggcgcg tcacatggtg gttcgaccac caccagtccg ccttcctcac
      541 gcccgaggac gaggcgcact tccgcgccga ccgctccggc cggaagttct gggaccccga
      601 gagcaagtcc tgcacggagt tcattgcgcg cgtcgcctcc gaggagttcg gcttcgcgga
      661 cgcgtcgctc gcgccgctcg tcgcctgggc gcacacgata gacggcgcct tctacgagtc
      721 ggccgcgcag cccgtagagc tgcgcgagcc cgccctccag ctcatgcagg tcatcgagaa
      781 cgtccccgac gaggagttca tcgagcagat aatacgcggc ctctccgagc gcacgctcga
      841 cgaggtggcc tcgggcgagg acgtgcagcg gcggttccgc ccgctgctcg agcgccaccg
      901 cgagacggtc gagctcatac gccgcaaggc cgcgtactcg cgaggcgtcg tcaccttcga
      961 cctcgcggac gaggggctcg ccggcttcaa caagttcatc ccctactaca tctgcccgga
     1021 gacgacctac tcggtggcgg tgacgcgcgg ccccgcgcgc gcgaaaatct cggtgggctc
     1081 gaacccgttc agcccgcgcc cgcgccgcca caacctcgcc tccatctgcg agcgctacgg
     1141 cggcggcggc cacgccgtgg tcggcgcggt ctcctaccgc cccgacgagg tcgagcgcgc
     1201 gagggagacg gcgcgcgaga tagtcgccga gcttcaggaa ggcttcgacg gttaagcgcc
     1261 cccggacttt ccgttgacag cgccgcgggg ttgcaatagt cttcggcgcg cccctccgac
     1321 acgcctcagc ctttccaccg aaggaggacg gacatgacga ctaaccagaa gtacctcgtg
     1381 ctggcctgcg acggcggcgg catacgcggg ctgataacgg cgctgctgtt agagcagctc
     1441 ggccccggcc tgctcggtca ggtctatctg ttcgcgggga cttcgacggg cggcatactt
     1501 tctctcgggc tcgcatgcgg cgtccccgtg gcggagcttg tgagcctcta cgagaccgac
     1561 ggcgagcaga tattcactaa gagccagtgc ctaggcgggc cgggcgcgca ggccgccgct
     1621 gccgccgcat tggcccccgc gcagggcgcg ccggtcggcg gcatctggac tgacatactt
     1681 cagtacctgg ccgagctcat ctgcgtgaag tacgacaacg cggggctgat gggcgccgtc
     1741 aactccacgc tcggcgggag cgccggcgcg accctttcga gcctcgacag gaacgtgatg
     1801 gtcacgacct tccagctcta cggcaacgag ccgaacggcg cgtgggggcc gctggagctt
     1861 cacaacatac cgaacattac ggacaacccc agcgcctcga cgaaggtcat tgacgcggcg
     1921 atgagcacga gcgccgcgcc gacttacttc ccgccctaca accacccggc cttcggctac
     1981 tgcgccgacg gcggcgtctt cgccaacaac ccggcgctgc tcgccgtctc caagctcatc
     2041 gagtcgggca taccgctcga atccatctgg gtgctctcgc tcagcacggg caacaccgtc
     2101 aacagctacc cgccgtcgct gattaacagc gtctatgcgc ccgcctcggc cttcggcccc
     2161 ttcttctggc tcttccccga ggcgcagcag tcaacgcaag gcacgcagca gacttacacg
     2221 ccgggcatgc cgctcacctc cgcgctgttc gacggcgtct ccgaggtgaa cgactaccag
     2281 tgctcgctcg tcctcccgaa ggggcagtac aagcgcgcca acgtcccgct cacggccccc
     2341 gtcgcgctcg acgactactc gccgcaggcg atacaggcca tgagggacgc cgtaagcagt
     2401 tacacgggcg agtcgggcgg cgagtgggcc ggcatcgtga gctggataaa cgacaacttc
     2461 cctggcggct cctgagcggc tccgacgaag aagaaagcca cggggacggc tcccggcggg
     2521 agccgtcccc gtggctttag cgtcgcccgt cgtcttcttt ctaacgcgcc atcagcgcct
     2581 ctatctcttc gatagttttg ggcgccttat cagttaagac gaggtggcct tccgcggtga
     2641 cgagcacatc gtcctcgatg cggacgccta tgccgcggta cttctccggc acaccctcgg
     2701 ccgtctcgga gacgtagatg cccggctcga ccgtcatcac tatccctgcc tcgacggggc
     2761 gcggctcgcc gccgtcggtc tggtacgggc caacgtcgtg cacgtccatg ccgaggtagt
     2821 ggccgaggcg gtgcatgtaa aacttcttgt agccctcctc ctctatgagc ttcccgacct
     2881 cgccttcgag caggcccagc cgaaccatcc cctcggtcag aatctccacg g
//
LOCUS       DASPKR010000470         5963 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_327254, whole genome shotgun sequence.
ACCESSION   DASPKR010000470 DASPKR010000000
VERSION     DASPKR010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5963)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5963
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327254"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1621)
                     /locus_tag="VD968_12580"
     CDS             complement(<1..1621)
                     /locus_tag="VD968_12580"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HYE15274.1"
                     /translation="MRALDWVVLVASMAGIVLYGLWKGRRTRDLDDFLVADRAMRWHH
                     VALSVMATQASAITFLSTPGQAYADGMRFVQFYLGLPVAMVVLAATAVPVYHRLKVYT
                     AYEYLEGRFDLKTRTLAAALFLIQRGLGAGFTIYAPSLILSALMGWDIRLVVLVLGGT
                     VTLYTALGGARAVDNTNFQQMLIIMGGMLVAFLTIVWLLPADVSFTEALSVAGKSGRL
                     EAVDFSFDVKSQYNFWSGLVGGCFLALSYFGTDQSQVQRYLCGASVAQSRLGLLFNGL
                     AKVPMQFFILFIGAMVFAFYQFTAPPVFFNPVEVEKVRRGPRAAEFAALEAEHAGAVE
                     ARAREARRVVEAARSGDGRAEAEAAEALRAAQERARGVRERVAGLMKAEDPGANTNDT
                     NYVFLTFVTRYMPAGVVGLVLAAVFFASMSSSASELSALASTTVVDIQRRLFRRDRGE
                     RYFLISSKLATLFWGLFAMAFAEYAGQLGSLVEAVNRLGSLFYGTILGIFLLAFYFKR
                     VGGTAAFAGAGAGEAVVLYCFFRTEIAYLWFN"
     gene            complement(1618..1773)
                     /locus_tag="VD968_12585"
     CDS             complement(1618..1773)
                     /locus_tag="VD968_12585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15275.1"
                     /translation="MTDDGRRDGRTGAAEEAPPFGGSWRALYAALLLILALEVALFYL
                     FTRAFSG"
     gene            complement(1770..4298)
                     /locus_tag="VD968_12590"
     CDS             complement(1770..4298)
                     /locus_tag="VD968_12590"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HYE15276.1"
                     /translation="MKLRLRRLWPAACLPLLLLFLPAAVRAQAPSVMDAAQTALALKR
                     LQVLGSALYVAAHPDDENTALLAYLAQGRGVRAAYLSITRGDGGQNLIGTEQGALLGL
                     VRTHELLAARRIDGAEQLFTRAVDFGFTKSSEEALRVWGRDAALADVVWAIRRLRPDV
                     VITRFPTTGEGGHGQHTASAVLAREAFEAAGDPARFPEQLAYVKPWRPKRLLWNAFVR
                     GGERPAGADRLLSVDVGAYNPLLGRSYTEIAAQSRSQHRSQGFGSAERRGPSVNYFAH
                     LAGEEARADIFDGVDLSWRRVAGGEAVGRILAEAAGKYDASDPQAILPLLVAAHAEMR
                     KLPEGDTLVAAKRRELLEVIRACAGLWMEAVASEPQAAPGAEVKITTTLVNRSDFPFR
                     LRRRMVGPVQPVTGPVVDAELKNNQPVQTESAARLPAGSPATQPYWLAGSTARGLFEV
                     AEQTLVGEPVGRPALTATLVLEAGSGRELLTYTLPVVYRWTDRVRGELYRPFVLVPAV
                     AVRLEEKVLVFPERRPKEVSVSLKSNAAAAVSGVLRLRLPDGWASSPREVPVTLKTKG
                     EEFKAAFAVTPPEGEAAGSLGAEFDSGGERLTRGLVQIDYEHIPPQTVFPEAAARLVR
                     LDLRRRGSRVGYVMGSGDEVPEALRQAGYDVSLLSDEDLDSADLSRFDVVVVGVRAYN
                     TRPRLRQRQARLLDYVERGGTLVAQYNTAEAALDNFALGPYPLKLSRSERVTDETAPV
                     RVLAPEDPLLREPNQIAAADFEGWVQERGLNFPSEWDARYLALFEFADPGERPLRGAT
                     LVARHGRGTYVYTSLAFFRQLPAGVPGAYRLFVNMVSAGKGGVK"
     gene            complement(4404..5204)
                     /locus_tag="VD968_12595"
     CDS             complement(4404..5204)
                     /locus_tag="VD968_12595"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15277.1"
                     /translation="MKALPRIMLALVASAALSASGCSWLRGPGGGSANTQADAAPAEG
                     GGAGQPNGQAAGADARALFQRGMEAYRKNRDREAVEAFAEATRIEPDFAEAYYRLGLA
                     HAALGEDDEADKAFKAAVEAYERVLKHDEKNAEALYFLGLAHVKLGEYEEAVKAFKES
                     IKNSPEEDDDKYYELGLAHYKLAQYPESIKALNKALEINPDYYAATDALERAKAGRER
                     REAFLEQLEKRRKQEQAKSNSNAAANSNANSATGAPRNTAAPTPQTNP"
     gene            5362..>5963
                     /locus_tag="VD968_12600"
     CDS             5362..>5963
                     /locus_tag="VD968_12600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15278.1"
                     /translation="MDYRGREAFVSPNDETVPLEPERAVRAPRFDEKSIQRARPAVPL
                     RTGEPRRRAALPVSMIVVCVVALLAGAGLGVVVLTLMRGDDTGAGARDTAQRRAAESE
                     PAVRDEAAIGAAALPAEEAREQAAGDDNALAAGTAEEAAAPGDARAELRGALESWLAA
                     TNARDLERQMVFYDSTLEAFYLSRGASRAAVRAEKARAFSG"
BASE COUNT          948 a         1997 c         2121 g          897 t
ORIGIN      
        1 cgttgaacca gaggtaggct atctccgtgc ggaagaagca gtagagcacg actgcctcgc
       61 ccgccccggc gcctgcgaag gcggcggtgc cgccgacgcg cttgaagtag aaggccagga
      121 ggaatatgcc gaggattgtg ccgtagaaga gcgagccgag gcggttgacg gcctcgacca
      181 gtgagccgag ctggcccgcg tactctgcga acgccatggc gaacagcccc cagaagagcg
      241 tcgcgagctt cgacgagatg aggaagtagc gctcgccccg gtcgcgacgg aagaggcggc
      301 gctgtatgtc caccactgtc gtcgaggcga gcgcgctcag ctccgacgcc gacgaggaca
      361 tcgaggcgaa gaagacggcc gccagcacca gccccaccac gcccgccggc atgtagcgcg
      421 tgacgaaggt gaggaagacg tagttcgtgt cgttcgtgtt ggcgcccggg tcttcggcct
      481 tcatcaggcc cgccacgcgc tcgcgcacgc ccctggcgcg ctcctgcgcg gcgcgcaggg
      541 cttcggcagc ctcggcctcc gcccggccgt cgcccgagcg cgcggcctct acgaccctgc
      601 gcgcctcgcg cgcacgcgct tcgaccgccc cggcgtgctc ggcctcgagc gcggcgaact
      661 ccgcggccct cggcccccgc cgaaccttct cgacctctac ggggttgaag aagacgggcg
      721 gcgccgtgaa ctggtagaag gcgaagacca tcgcgccgat gaagagtatg aagaactgca
      781 tcggcacttt ggcgagcccg ttaaagagca gccccagtcg gctctgcgcg acggacgcgc
      841 cgcagaggta gcgctgcacc tgcgactggt cggtgccgaa gtaggagagc gcgaggaagc
      901 agccgcccac gagccccgac cagaagttgt actggctctt cacgtcgaag gagaagtcaa
      961 cggcctcgag cctgccggac ttgccggcga cgctgagcgc ctccgtgaag gagacatcgg
     1021 ccggcagcag ccagacgatt gtgaggaagg cgaccagcat gcctcccatg atgatgagca
     1081 tctgctggaa gttcgtgttg tcaacggcgc gcgcgccgcc cagcgccgtg tagagcgtca
     1141 cagtcccgcc gaggacgagc acgacgagcc ttatgtccca gcccatcagc gccgaaagga
     1201 tgagagacgg cgcgtagatg gtgaagcccg cgcccaggcc gcgctggatg aggaagagcg
     1261 cggcggcgag cgtgcgcgtc ttcaggtcga agcgcccttc gaggtactcg taggccgtat
     1321 agactttcag gcggtgatag acggggacgg ccgtggcggc gagcacgacc atcgcgaccg
     1381 gcagtcccag atagaactgc acgaagcgca tgccgtcggc gtaggcttgg cccggcgtgg
     1441 agaggaacgt gatggcgctg gcctgcgtcg ccatcaccga gagcgcgacg tggtgccagc
     1501 gcatggcgcg gtcggcgacg aggaagtcgt cgaggtcgcg cgtcctgcgg cccttccaca
     1561 ggccgtagag cacgatgccc gccatcgagg cgacgagcac gacccagtcg agcgccctca
     1621 tcccgagaaa gccctcgtga agagatagaa gagcgcgacc tctaaggcga gaatcaaaag
     1681 cagcgcggcg tagagcgcgc gccaactgcc gccaaacggc ggcgcctctt cggccgcgcc
     1741 cgtccgcccg tccctgcgcc cgtcgtcagt catttcacac cgcccttccc ggccgagacc
     1801 atgttgacga agaggcggta ggcaccgggg acgcccgccg gaagttgccg gaagaaggcg
     1861 agcgacgtat agacgtaggt gccgcggccg tggcgcgcga cgagggttgc gccgcgcagg
     1921 gggcgctcgc cggggtctgc gaactcgaag agcgcgaggt agcgcgcgtc ccactcggag
     1981 gggaagttca gtccccgctc ctgaacccag ccttcaaagt cggccgcagc tatctggttc
     2041 ggctcgcgca gcagagggtc ttccggcgcg agcacgcgca ccggcgccgt ctcgtccgtg
     2101 acgcgctcgc tgcgcgagag cttgagtggg taggggccga gcgcgaagtt gtcgagcgcc
     2161 gcctcggccg tgttgtactg ggcgacgagc gtgccgcctc gctcgacgta atcgagcagg
     2221 cgggcctgcc tctgcctgag ccgaggccga gtgttgtagg cgcgcacgcc cacgacgact
     2281 acgtcgaagc gagagaggtc ggccgagtcg aggtcttcgt ccgagaggag cgaaacgtcg
     2341 tagccggcct gcctgagcgc ctccggcacc tcgtcgcccg agcccatcac gtaaccgacg
     2401 cgcgagccgc gcctccgcaa atccaatctg acgagccgcg ccgccgcctc ggggaagacc
     2461 gtctgcggcg ggatgtgctc gtaatcaatc tggacaagcc cgcgcgtcag gcgctcgccc
     2521 cctgaatcga actcggcgcc gagcgagccc gcagcctcgc cttcgggcgg cgtgactgcg
     2581 aaggccgcct tgaactcctc gcctttcgtc ttgagcgtca cgggcacctc gcgcggcgaa
     2641 gaggcccagc cgtccggcag ccgcagccgc agcacgcccg agaccgccgc cgccgcgtta
     2701 ctcttcaggc tcacgctaac ctctttgggc cgccgctcgg ggaagaccag gactttctct
     2761 tcgagccgca cggcgaccgc ggggactagg acgaaggggc ggtaaagctc tccgcgcacg
     2821 cggtcggtcc agcgatagac gacgggcagc gtgtacgtga gaagctcgcg gcccgacccc
     2881 gcttcgagca cgagcgtggc cgtcagggcg ggcctcccca cgggctcgcc tacgagcgtc
     2941 tgctctgcaa cctcaaatag cccccgcgcc gtcgagcctg cgagccagta tggttgggtc
     3001 gcgggcgagc ccgcgggcag tcgcgcggcg gattcggtct gcaccggctg gttgttttta
     3061 agctcggcat caacgacagg ccctgtgacg ggctgcaccg gccctaccat tcgccggcgg
     3121 agcctgaagg ggaagtcgga gcggttgacg agagtcgtcg tgattttgac ctcggcgccg
     3181 ggcgcggcct gcggctccga cgcgactgcc tccatccaga gccccgcgca cgcgcgtatg
     3241 acttcgagca actcccgccg cttcgccgcg acgagcgtgt cgccctccgg tagcttgcgc
     3301 atctctgcgt gcgcggcgac gagcaaaggc agtatggcct gcgggtcgga ggcgtcgtac
     3361 ttgcccgccg cctcagcgag aatccgcccg acggcctcgc cgcccgcgac gcggcgccag
     3421 ctcaagtcaa cgccgtcgaa gatgtcggcg cgcgcctctt cgcccgcgag gtgcgcgaag
     3481 tagttgaccg aggggccgcg gcgctcggcc gagccgaatc cctggctcct gtgctggctg
     3541 cggctctgcg ctgctatctc cgtgtaggag cggcccagca gagggttgta ggcgcccacg
     3601 tcaacgctca ggagcctgtc ggcgccggcg ggccgctcgc cgccccggac gaaagcgttc
     3661 cagagcaggc gctttgggcg ccagggtttg acgtaagcga gctgttcggg gaagcgcgcg
     3721 gggtcgcccg cggcctcgaa ggcttcgcgc gcgagcacgg ccgaggccgt gtgctggccg
     3781 tgcccgccct cgccggtcgt ggggaagcgc gtgatgacaa cgtcggggcg gaggcgtcgt
     3841 atcgcccaga ccacatcggc gagcgccgcg tcgcgccccc aaacgcgcag cgcctcctcc
     3901 gaagacttcg tgaagccgaa gtcaacggcg cgcgtgaaga gctgctcggc gccgtctatc
     3961 ctgcgcgcgg ccagaagctc gtgcgtgcgc acgagcccga ggagcgcgcc ctgctcggtg
     4021 cctatcaagt tctgtccgcc gtcgccgcgc gtgattgaca ggtaggccgc gcgcacgccg
     4081 cgcccctgcg cgaggtaggc gagcagcgct gtgttctcgt cgtccgggtg cgcggcgacg
     4141 tagagcgcgc tgcccaggac ttgcagccgc ttgagcgcta gcgccgtctg cgcggcatcc
     4201 atcacggacg gcgcctgcgc gcgcacggcc gcaggtaaga acaacagcag gagcggcagg
     4261 caggcggccg gccagagtct tcgtagtctt agcttcatgc tcggtcgaaa tagtgcggtt
     4321 taaatctcgg ctggcacgta ttcttccgaa acccggcggg gacggtcaac cgcggtcgtg
     4381 taaaaagttt tcgcgcgacc gcgtcagggg ttggtctgcg gtgtgggggc ggcggtgttg
     4441 cgcggggcgc ccgtggcgga gttggcgttc gagttggcgg cggcgttcga gttcgacttg
     4501 gcctgctcct gcttgcgacg cttctcgagt tgttcgagga aggcttcgcg ccgctcgcgc
     4561 ccggccttcg cacgttcgag cgcgtcggtc gcggcgtagt agtcggggtt gatttcgagg
     4621 gccttgttca aagccttgat ggactcgggg tactgcgcga gcttgtagtg cgcgaggccc
     4681 aactcgtagt acttgtcgtc gtcctcctcg ggcgagttct ttatggactc cttgaaagcc
     4741 ttgacggcct cctcgtactc gccgagcttg acgtgcgcga ggccgaggaa gtagagcgcc
     4801 tcggcgttct tctcgtcgtg cttgagcact cgctcgtaag cctcgaccgc cgccttgaaa
     4861 gccttgtcgg cctcgtcgtc ctcgccgagc gcggcgtgcg cgaggccgag gcggtagtaa
     4921 gcctcggcga agtcgggttc gatccgcgtg gcttcggcga aagcctcaac ggcctcgcgg
     4981 tcgcggttct tcctgtacgc ctccatgccg cgctggaaga gggcgcgcgc gtcggcgccg
     5041 gccgcctgcc cgttcggctg acccgcgcca ccgccttcgg ccggcgcggc gtcggcctgc
     5101 gtgttcgccg agccgccgcc gggcccgcgc agccaggagc agcccgaagc ggagagcgcc
     5161 gccgaggcga cgagcgccag catgattctg ggcagagctt tcattgttcg tccttcgtta
     5221 cggcggcggg caagtcgcga gaactgtatc tacgccaaac cggcgggcga agtcaaaccg
     5281 ggatagtgga ctggttgttg cctttaaatt gacgaagccg ggaggagtgt atcggttgcg
     5341 ttcaagggag gcggcggcgt gatggattac agggggcgcg aggcgttcgt aagtccaaac
     5401 gacgaaacag ttccgctaga gcccgagagg gccgtgcgag cgccgcgctt cgacgagaaa
     5461 tcaatacagc gcgcgaggcc cgccgtcccg ctgaggacgg gcgagccgcg gcgccgggcg
     5521 gcgctgccgg tcagcatgat tgtcgtctgc gtcgtcgcgc tgctcgcggg cgcggggcta
     5581 ggcgtcgtgg tgctcacgct catgcgcggc gacgacactg gcgccggggc gcgcgacacg
     5641 gcgcagcgcc gtgcggcgga gagcgagccg gccgtgcgcg acgaagccgc tataggcgcc
     5701 gccgccctgc ctgccgaaga ggccagagag caggcggccg gcgacgataa cgctctcgcc
     5761 gccgggacgg ccgaagaggc agccgctccg ggcgacgcgc gcgcggagct tcgcggcgcg
     5821 ctcgaaagct ggctcgcggc cacgaacgcg cgcgacctcg aaaggcagat ggtcttctac
     5881 gactcgactc tcgaagcctt ctacctctcg cgcggcgcct cgcgcgcggc cgtgcgcgcc
     5941 gagaaggccc gcgccttctc ggg
//
LOCUS       DASPKR010000471         7506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1880514, whole genome shotgun sequence.
ACCESSION   DASPKR010000471 DASPKR010000000
VERSION     DASPKR010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7506)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7506
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1880514"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..657
                     /locus_tag="VD968_12605"
     CDS             <1..657
                     /locus_tag="VD968_12605"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYE15279.1"
                     /translation="GRDPVLANATSTVALWPASLAGVYGFRRELGGGRRWLLLFGAPS
                     LAGGVLGAVLLLRTPTGTFARLVPYLILFATLLLALQEPISRRLRGGDDADERNPSRA
                     WAAGAVAFQFLVGVYGGYFGAGIGILMLAALGLLGFSDIHRMNALKNLLAICINGVAA
                     AYFIFSGAVIWADVLVMTFAAIAGGYAGARLAYRLGRRFVRAAVVAIGLVMGVSLFFQ
                     "
     gene            complement(658..1521)
                     /locus_tag="VD968_12610"
     CDS             complement(658..1521)
                     /locus_tag="VD968_12610"
                     /inference="COORDINATES: protein motif:HMM:NF016143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HYE15280.1"
                     /translation="MRWRGQRQSTNVEDRRGLGRGGVVVGGGLGGLVLLVAALLCGVD
                     PSQLLNQSPGEGGGPAQGPGQQAGRPANAAEDEMRDFTGAVLGSTEDVWNEVFREGGR
                     AYREPGLVIFSDQVRSACGMAESAVGPFYCPGDQKVYIDLSFYRELKSQFRAPGDFAQ
                     AYVIAHEVGHHVSNLTGTMSRVHSAQQRAGEAEANRLSVRLELQADCYAGVWAHHADK
                     RGLVEPGDVEEALRAATAIGDDNLQRQAQGYVVLDSFTHGTSEQRARWFRNGYESGDV
                     RRCDTFGARSL"
     gene            complement(1524..3140)
                     /locus_tag="VD968_12615"
     CDS             complement(1524..3140)
                     /locus_tag="VD968_12615"
                     /inference="COORDINATES: protein motif:HMM:NF024491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HYE15281.1"
                     /translation="MATEVNETGTFAKAMADEQSPTRQLVEQAYARATGAPLIAGNSV
                     RLLKDAGENYPAWLEAIASAERWVHFESYIIHDDDVGREFAEALKRKAREGVRVRVIY
                     DWMGAIGKTSGRFWRDLREAGVEVNAFNPPRLGEPFGWLNRDHRKMIGVDGRVGFVMG
                     LCVGRDWVGYDGKEPWRDTGVEIRGPAVADIGLAFASAWRSSCAESIPEDELPARESI
                     PHAGDVALRVIATEPNSVGMYRLEQLVAAGARETLWLTDAYFVGTNMYVQALRAAARD
                     GVDVRLLVPSSSDIPVIAALSRVNYRALLEAGVRVFEWNGTMIHAKTAVVDGRWARVG
                     STNLNVASWMGNWELDVTIEDEEFAHKMEEMYCRDLEHSTEIVLGGRRRVFYSAGPER
                     KLPRKGLGSRRGSAGRAAAGAIGIGSAVKAAITNRRELGPAEARLMVFSALTLFALSL
                     VAVKWPRGVAFPLAFVGVWASLALAMRAYKLHREGRREAAEERASKPPAGESRDLPPR
                     EGAAEAARAKPKARREGAHVPARGGEGGNI"
     gene            3318..3998
                     /gene="rpiA"
                     /locus_tag="VD968_12620"
     CDS             3318..3998
                     /gene="rpiA"
                     /locus_tag="VD968_12620"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF001924.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HYE15282.1"
                     /translation="MEAKRRAGERAVEFVEDGMAVGLGTGSTAHWVVEGIGRRVREEG
                     LRVRCVPTSRRTEEHARSLGIPLVTFAEVRRLDLAIDGADEIGPGLALIKGGGGALLR
                     EKLVARAASRFVVVADEGKLVERLGKFPLPVEVVPFAWETTAERVARAAGAEPVPRRA
                     EGGEFYLTDNGNLILDCRCGEIADPERMERELKLITGVVECGLFVGMADVAVVATDDA
                     ARVVERRD"
     gene            4017..4661
                     /locus_tag="VD968_12625"
     CDS             4017..4661
                     /locus_tag="VD968_12625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15283.1"
                     /translation="MRSHLMLLLAASWGRSLIKFFARLGVFGPFVLEALDSSFFYMPL
                     ANELLLVALIHDGGGSRWMWAAYALAGAAGTVAGVLALDVVMRRVGEEGIERLVPRKR
                     FGKLKSKVESHTGWVVFVSSALPPPFPFRVTVMTASALQCRRAPMLAAVFFGRTLRFA
                     AEALLILYFGRQFLKVMESEAFEYVIYALVLAAVAGSALTIWRLFGGRKRGGMR"
     gene            complement(4667..4855)
                     /locus_tag="VD968_12630"
     CDS             complement(4667..4855)
                     /locus_tag="VD968_12630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15284.1"
                     /translation="MAKKKDMAAKDKEPQVRGRPGPASATANETRRAGKRGGSAPSGR
                     SPKVGKHETGRGGGGGLH"
     gene            complement(4864..5193)
                     /locus_tag="VD968_12635"
     CDS             complement(4864..5193)
                     /locus_tag="VD968_12635"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HYE15285.1"
                     /translation="MPDLDIRISAKRGDETKTSQIFNQIASAILAGKFDAGDEICSER
                     ALAERLGVSRNVVRGAYRRLEEEGLIETVSTSGRRVRCAASGNKKAMGAAGIEHDDRV
                     AMGNRRG"
     gene            complement(5296..6390)
                     /locus_tag="VD968_12640"
     CDS             complement(5296..6390)
                     /locus_tag="VD968_12640"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HYE15286.1"
                     /translation="MSSRYGGRGYGRFGGRDEAGERRFGRDYDDDEETTRYGREGYYG
                     EGSRGSAGGYGLSGRDYGRGGERDYETFGGRDYGRPYDAGGAYGREYPSRYGRETTYY
                     GGGGFEGRDYGRDFGRGYARDYERGREPDYDRDRDDRERGQDTDYGRTTSRFFGRGGD
                     YERRYERDDKERSGRGSHERRGEGGGRGWVDRAADEVLSWFGDEGAERRRRLDDMRGG
                     RNRGRGPKNYRRSDERIREEINDRLTEDDWLDATEIEVSVIAGEVVLTGEVESRRDKR
                     YAEDIAVSVSGVNNVQNNLRVQNWRGREGERHAGSAAAATVPPSALGATATGGLPTTA
                     PVDETMTETDGPSGSSPTGGTTSRAAKTSG"
     gene            complement(6469..6657)
                     /locus_tag="VD968_12645"
     CDS             complement(6469..6657)
                     /locus_tag="VD968_12645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15287.1"
                     /translation="MAGKKGDRELIDTGTDKRYVRRDEKGRFEESDDVGRSLSQDVKR
                     EAKTKVKPGQGDRGDQKR"
     gene            complement(6711..>7506)
                     /locus_tag="VD968_12650"
     CDS             complement(6711..>7506)
                     /locus_tag="VD968_12650"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA primase small subunit domain-containing
                     protein"
                     /protein_id="HYE15288.1"
                     /translation="PLIMKRYPAGIRGQSFHQHDVNEVPDFVRTVTLEVEEGGHTVDY
                     IVGDNRTTLLYMANLGAIERHPFHSRVESLDRPDWFVFDLDPSEGVKFEIICDLAVAT
                     RGVLERAGLDSYPKTSGSRGLHVYVPIKPAYTYEQVAALAEQLATVVARENPEIATVE
                     RSKSKRGAGRIYVDHMQNARGKSVAAPYSVRPRPGASVSAPLEWSEVERKRIEPRDFT
                     IKNMLRRVGRKGDLFRPVLRGGQKLEEAFGRAAELSREKSARRARA"
BASE COUNT          963 a         2705 c         2545 g         1293 t
ORIGIN      
        1 ggccgagacc ccgtgctcgc gaacgcgact agcaccgtgg cgctctggcc cgcgtcgctc
       61 gcaggggttt acggcttccg gcgagagctg ggcgggggca ggcggtggct cctgctcttc
      121 ggcgcccctt cgctcgcggg cggcgtcttg ggcgcggttc tgctgctgcg cacgcccacg
      181 gggacgttcg cgcgcctcgt cccttacctc atactcttcg ccacgctgct gctcgcgcta
      241 caggagccga tctcgcgcag gctgcgcggc ggcgatgacg ccgacgagcg gaatccttcg
      301 agggcgtggg ccgccggggc ggtggccttt cagttcctgg tgggagttta cggcggctac
      361 ttcggggcgg ggatagggat actgatgctg gcggcgctcg ggcttttggg cttcagcgac
      421 attcaccgca tgaacgcgct caagaacctc cttgcaatct gcatcaacgg cgtggccgcc
      481 gcctacttca tcttctccgg cgcggtcatc tgggccgacg tgctcgtgat gaccttcgcc
      541 gcgatagccg gcggctacgc gggcgcgcgc ctcgcctacc gcctcggccg gcgcttcgtc
      601 cgcgcggccg tcgtcgccat cgggctggtg atgggcgtgt cgctcttctt ccagtagtca
      661 gaggcttcgc gcgccgaagg tgtcgcagcg gcgaacgtcg ccggactcgt agccgttgcg
      721 gaaccagcgg gcgcgctgct ccgaggtgcc gtgcgtgaag gagtcgagga cgacgtagcc
      781 ttgcgcctgc cgctgtaggt tgtcgtcgcc gatggccgtg gcggcgcgca gggcctcctc
      841 cacgtcgccc ggctcgacta agccccgctt gtctgcgtgg tgagcccaga cgcccgcgta
      901 gcagtcggcc tgaagctcta atctgacgga cagacggttc gcctcggcct cgcccgcgcg
      961 ctgctgggcg gagtggacgc gggacatcgt gccggtaagg ttgctgacgt ggtggccgac
     1021 ctcgtgcgcg atgacgtagg cctgggcgaa gtcgccgggc gcgcggaact ggctcttcag
     1081 ctcgcggtag aacgagaggt ctatgtaaac cttctggtcg ccggggcagt agaaggggcc
     1141 gaccgccgac tcggccatgc cgcaggccga gcgcacctgg tcggagaaga tgacgaggcc
     1201 gggctccctg taggcgcggc cgccctcgcg gaacacttcg ttccaaacgt cctcggtgct
     1261 gccgagcacg gcgccggtga agtcgcgcat ctcgtcctcg gccgcgttcg cggggcggcc
     1321 cgcctgctgg cccggcccct gcgcggggcc gccgccctcg ccgggcgact ggttgagtag
     1381 ctggctcggg tcaacgccgc acaagagcgc cgctacgagc agcacgaggc cgccgagccc
     1441 gccgcccacg accacgccgc cgcgccccag gccccggcgg tcttccacgt tcgtgctctg
     1501 gcgctgccct ctccaacgca taattaaatg ttccctccct caccgccgcg cgccggtacg
     1561 tgcgcgccct cgcgccgcgc cttcggcttc gcgcgcgccg cttcggccgc gccctcgcgc
     1621 ggcgggaggt cgcgcgactc gcccgccggg ggcttgcttg cgcgctcctc cgcggcctcg
     1681 cgccgcccct ccctgtgcag cttgtacgcg cgcatggcga gcgccagcga ggcccacacc
     1741 cccacgaagg cgagcgggaa cgcgacgccg cgcggccact tcaccgccac gagcgagagc
     1801 gcgaagagcg tcaacgcgga gaagaccatc agccgcgcct cggccggccc aagctcgcgc
     1861 cggttcgtga tggcggcctt gacggcgctg ccgatgccga tggcccccgc ggccgcgcgg
     1921 cccgcgctcc cgcgccggct ccccagacct ttgcgcggca gcttcctctc ggggccggcc
     1981 gagtaaaaaa ctctccgcct gccgccgagc actatctcgg tcgagtgctc gaggtcgcgg
     2041 cagtacatct cctccatctt gtgcgcgaac tcctcgtcct caatggtaac gtccagctcc
     2101 cagttaccca tccagctcgc gacgttcagg ttcgtcgagc cgacgcgcgc ccagcggccg
     2161 tcaaccacgg ccgtcttcgc gtgaatcatc gtcccgttcc actcgaagac gcgcacgccc
     2221 gcttctagca gcgcgcggta gttgacgcgc gagagcgcgg cgatgacggg tatgtcgctc
     2281 gaagaaggga cgagtagtcg cacgtcaacg ccgtcgcgcg ccgcggcgcg cagcgcctgc
     2341 acgtacatgt tcgtgccgac gaagtaggcg tccgtgagcc agagggtctc gcgcgcgccc
     2401 gccgcgacga gttgttcgag gcggtacatg cctaccgagt tcggctcggt cgcaatcact
     2461 cgcagcgcca cgtcgcccgc gtgcgggatg gactcgcgcg cgggcagttc gtcctcgggg
     2521 attgattcgg cgcacgaaga ccgccaggcg ctcgcgaagg cgagcccgat gtccgcgacc
     2581 gcgggcccgc gaatctcgac gccggtgtcg cgccacggct ctttgccatc gtagcccacc
     2641 cagtcgcgcc cgacgcacag gcccattacg aagccgacgc gcccgtccac gcctatcatc
     2701 ttcctgtggt cgcggttgag ccagccgaac ggctcgccta gccgcggagg gttgaaggcg
     2761 ttgacctcga cgcccgcctc ccgtaggtcg cgccagaacc ggcccgaggt cttacctatc
     2821 gcgcccatcc agtcgtaaat gacccggact cgcacgccct cgcgcgcctt gcgcttgagc
     2881 gcctcggcga actcgcgccc cacgtcgtcg tcgtggatga tgtagctctc gaagtgaacc
     2941 caccgctccg ccgacgcgat ggcttcgagc cacgcggggt agttctcccc ggcgtccttg
     3001 agcagccgga cgctgttgcc ggcgatgagc ggcgcgcccg tcgcgcgcgc ataagcctgc
     3061 tcgacgagct ggcgcgtggg cgactgctcg tcggccatcg ccttcgcgaa cgtccccgtc
     3121 tcgttgactt cggtcgccat aaacttgcga atctacacgc gccgtctctg ccctttgtgc
     3181 aagagagtta acaattctgt tgcggggagc ctggccgccc ttatgatagc gcgttttcgg
     3241 ccgcgcggcg cgcggaagtc gttggccggc gcgcgcgggc gtcgtgcata atgtcggccg
     3301 gagggaacac aagacatatg gaagcgaagc ggcgcgcggg cgagcgcgcg gttgagttcg
     3361 tcgaggacgg catggccgtc ggcttaggca cgggctcgac cgcccactgg gtcgtggagg
     3421 ggatcgggcg ccgcgtgcgc gaggagggat tgcgcgtgcg ctgcgtgccg acctcgcgca
     3481 ggactgagga gcatgcgcgc tcgctcggga tacccctcgt cacgttcgcc gaggtgcggc
     3541 ggctcgacct ggcgattgac ggggccgacg agataggccc cggcctcgcc ctcataaagg
     3601 gcgggggcgg cgcgctcctg cgtgagaagc tggtggcgcg cgcggcctcg cgcttcgtag
     3661 tcgtggccga cgaaggcaag ctcgtcgaga ggctcggcaa gttcccgctg cctgtcgagg
     3721 tcgtgccgtt cgcgtgggag accacggccg agcgcgtcgc gcgagccgcc ggggccgagc
     3781 ccgtgccgcg ccgcgccgag ggcggcgaat tctacctgac ggacaacggc aacctcatac
     3841 tcgactgccg ctgcggcgag atagcagacc ccgaacggat ggagcgcgag ctgaagctca
     3901 tcaccggcgt cgtcgagtgc ggcctcttcg tcgggatggc cgacgtggct gtcgtggcca
     3961 cggacgacgc ggcgcgcgtc gtcgagcgcc gggactgacg cgaacgaagg gccaaagtgc
     4021 ggtcacacct gatgctcttg ctcgccgcct cgtgggggcg gtctctcata aaattcttcg
     4081 cccgcctcgg cgtcttcggc ccgttcgtgc tcgaagcgct cgactcctcc ttcttctaca
     4141 tgccgctggc gaacgagctg ctgctcgtcg ctctcataca cgacggcggc ggctcgcgct
     4201 ggatgtgggc ggcctacgcg ctggcgggcg cggccggcac ggtggcgggc gtgctcgcgc
     4261 tagacgtggt gatgcgccgc gtcggcgagg agggcatcga gcggctcgtg ccgcgcaagc
     4321 ggttcgggaa gttgaagtcg aaggtggaga gccacacggg atgggtcgtc ttcgtgtcga
     4381 gcgcgctccc gccgcccttc cccttccgcg tgacggtgat gacggcgtcg gccttgcagt
     4441 gccgccgcgc gccgatgctc gcggccgtct tcttcggccg cacgctgcgc ttcgccgccg
     4501 aggcgctctt gatactctac ttcggccggc agttcctgaa agtgatggag tccgaagcct
     4561 tcgagtacgt tatctacgcg ctcgtgctcg ccgccgtggc gggcagcgcc ctcacaatct
     4621 ggcggctctt cggcgggcgt aagcggggcg gcatgcgctg acttcttcag tggaggccgc
     4681 ccccgccacc cctgcctgtc tcgtgcttgc cgaccttcgg cgagcggccc gacggggccg
     4741 agccgccgcg ctttcccgcc cgcctcgtct cgttggcggt cgcgctcgca ggccccgggc
     4801 ggccacgcac ctgcggctcc ttgtccttcg ctgccatgtc cttcttcttc gccatagctg
     4861 ccctcacccg cgccggttgc ccatagcgac cctgtcgtcg tgctctatgc ctgcggcgcc
     4921 cattgccttc ttgttgcccg aggcggcgca gcgcacgcgg cgccccgagg tgctgacggt
     4981 ctcgatcagg ccctcctctt cgagccggcg gtaggcgccg cgcacgacgt tgcggctgac
     5041 gcccagccgc tcggctagcg cgcgctcgga gcatatctcg tcgcccgcgt cgaacttgcc
     5101 ggcgaggatg gcgctggcga tctggttgaa aatctgcgag gtctttgtct cgtccccgcg
     5161 cttcgcgctg atgcgtatgt cgaggtcagg catactcagg tcacccgtcg ccgtaaaggc
     5221 cctccgcgag gccgaaagct tgagacgggg gcgcggtctt cgcgcccccg tctcctgcat
     5281 cagtcgccgg ccgcgctagc cgctcgtctt cgcggccctc gaagtagtgc cgcccgtcgg
     5341 tgacgacccc gacgggccgt ccgtctccgt catagtctcg tcaaccgggg cggtcgtcgg
     5401 gagcccgccc gtcgccgtcg ccccgagcgc cgacggcggc acggtcgccg cggccgccga
     5461 gcccgcgtgt cgctcgccct cgcgcccgcg ccagttctgc acgcgcaggt tgttctggac
     5521 gttgttgacg ccagatacgg aaaccgctat gtcttcggcg tagcgcttgt cgcgccggct
     5581 ctcgacctcg ccagtgagca cgacctcgcc cgcgatgacc gagacctcga tctcggtcgc
     5641 gtcgagccag tcgtcctcgg tcaggcggtc gtttatctcc tcgcgtatgc gctcgtcgga
     5701 gcggcggtag ttcttcggcc cgcgccctcg gttgcgaccg ccgcgcatgt cgtcgaggcg
     5761 gcggcgccgc tcggcgccct cgtcgccgaa ccaggagagc acctcgtcgg ccgcgcgatc
     5821 aacccagccg cggccgccgc cctcgccgcg ccgctcgtgc gacccgcggc ccgagcgctc
     5881 tttgtcgtcg cgctcgtagc gccgttcgta gtcgccgccg cgcccgaaga agcggctagt
     5941 cgtgcggccg tagtctgtgt cctgaccgcg ctcgcggtcg tcgcggtcgc ggtcgtagtc
     6001 aggctcacgg ccgcgctcgt agtcgcgcgc gtagccgcgg ccgaagtccc tgccgtagtc
     6061 gcggccctcg aagccgcccc cgccgtagta ggtagtctcg cggccgtagc gcgaagggta
     6121 ctcgcgcccg taagcgccgc cggcgtcgta ggggcggccg tagtcgcggc cgccgaaagt
     6181 ttcgtagtcg cgctcgccgc cgcggccgta gtcgcggccc gagagcccgt agccgcccgc
     6241 cgagccgcgc gagccctcgc cgtagtagcc ttcgcggccg tagcgcgtcg tctcttcatc
     6301 gtcgtcgtag tcgcgcccga accggcgttc gcccgcctcg tcgcgcccgc cgaagcggcc
     6361 gtagcccctt ccgccgtaac gtgatgacat atacgcctcc tcaaaatgaa agtcgccgcc
     6421 ggccggcggg aagatatcag gagccgggcg ccggcgactt cccgattctc atctcttctg
     6481 gtcgccccgg tcgccctgcc ccggcttaac cttcgtcttg gcctcgcgct tcacgtcctg
     6541 cgagagcgag cggcccacgt cgtcgctctc ctcgaagcgg cccttctcgt ccctgcgcac
     6601 gtatcgcttg tcagtccccg tgtctatcag ctcgcggtcg cccttctttc ctgccatctc
     6661 ctaaatcccc ctttggtcga gttcaagaaa ctgttcgccc cttcaaaatc tcaagcgcgg
     6721 gcgcggcgcg cgctcttctc gcgggaaagt tcggccgcgc gcccgaaggc ttcctccaac
     6781 ttctgcccgc cgcgcagcac cgggcggaac aggtcgccct tccgaccgac gcggcgcagc
     6841 atgttcttta tcgtgaagtc gcgcggctcg atgcgcttgc gctcgacctc cgaccattcg
     6901 agcggcgccg agacgctcgc gcccggcctc ggcctcaccg agtacggcgc cgccacggac
     6961 ttgccgcgcg cgttctgcat gtggtcaacg taaatccgcc ccgcgccccg cttcgacttc
     7021 gagcgctcca cggtcgctat ctccgggttc tcgcgcgcga cgacggtagc gagctgctcg
     7081 gccagcgccg ccacctgctc gtatgtgtaa gcgggcttta tggggacata gacgtgcagg
     7141 ccgcgcgagc ccgatgtctt cgggtaggag tcgaggccgg cgcgctcgag gacgccgcgc
     7201 gtggccacgg cgaggtcgca gatgatctcg aacttgacgc cctcgctggg gtctaagtcg
     7261 aagacgaacc agtcggggcg gtcgaggctc tcgacgcgcg agtggaaggg gtggcgctcg
     7321 atggccccga ggttcgccat gtagagcagc gtcgtgcggt tgtcgccgac gatgtaatcg
     7381 acggtgtgcc cgccctcctc cacttcgagc gtcacggtgc ggacgaagtc gggcacctcg
     7441 ttgacatcgt gctggtggaa cgactggccg cggatgcccg ccgggtagcg cttcatgatg
     7501 agcggg
//
LOCUS       DASPKR010000472         5093 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1621150, whole genome shotgun sequence.
ACCESSION   DASPKR010000472 DASPKR010000000
VERSION     DASPKR010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5093)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5093
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1621150"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /locus_tag="VD968_12655"
     CDS             <1..257
                     /locus_tag="VD968_12655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15289.1"
                     /translation="ATDYVSQVDMRAGSTVRAPSARAGQARAARKCAACDAEVGQAKF
                     CPECGTPTAPRRPTCVGCGHQPEGTPKFCPECGAKMSVTS"
     gene            complement(343..591)
                     /locus_tag="VD968_12660"
     CDS             complement(343..591)
                     /locus_tag="VD968_12660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15290.1"
                     /translation="MARGWESKAVEAQVEEKDWRDSARRPSQELSPEERARVERLESV
                     HLSRARTLEQLERASSPAHRAMLKRTLLALERELAGLE"
     gene            complement(660..2123)
                     /locus_tag="VD968_12665"
     CDS             complement(660..2123)
                     /locus_tag="VD968_12665"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HYE15291.1"
                     /translation="MTNIKPNGSCRLSAVMTAVLVLLAPLSALAQTRIEVPKNKYKVS
                     DDVQLGREASQQVYQQMPILRDNYIDNYVEEVGRRLVDAIPAEFRHPEFSYSFDVVDA
                     RDINAFALPGGPMFVNRGMIEAARTEGEMAGVMAHEISHVALRHATAQATETQKYQIG
                     SVLGQIAGAVIGGVPGAIIGAGSQIGFGAGALKYSRKYETQADILGAQIMARAGYDPR
                     DLANMFRTIEQQGGGSRGPEWLSSHPNPGNRYERINQEAAMLRVNPSSARRDTAGFRD
                     VQARLRGYPRARTMEEIARSGQNYPNQGGGSNYPNDGRYPNDAGYARGERVAYPSSSY
                     RNIGNSLFRAAVPSNWRELGGQDNAVSYAPEGAYGGQGITHGVMFSVDQTQYRDLNGA
                     ARELVNNLLSARGNEYLRQTGGFQRAALGGRAALATTLAGRSPVTGRNERVTLIVTQL
                     SSGQVFYMAAVAPQNEYATYRQAFDQVLRSLQLNNRY"
     gene            complement(2397..4697)
                     /locus_tag="VD968_12670"
     CDS             complement(2397..4697)
                     /locus_tag="VD968_12670"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HYE15292.1"
                     /translation="MGRKLFACLLALAALAPLGPDAAAQRRRVTRRTAPARESSVNRL
                     WDARVAQLGESYLRGHYAFNPGEATAAGLHDLDSQLESRSPESVAQEIRRLRAALAEL
                     MRVPQWRLSPESRYDTLVMMAHARAQLLDLEETGTWQRDPALYTRLASEGVDNILKRA
                     YAPIERRLDAVLARERQIPRLLAEARENLQSPPRLHTEAAIEQAAGSVAFFERVVPQM
                     FERAGGSGLSAARRAEFHAANDSVVAALKEYRDWLSRELLPRSNGDYRLGADAFRRKL
                     LFEEMIDTPPALLVREGERMLRETQDEMRDLSEQIAPGRGVQAALRLLGRERPAAEGL
                     VGEARAELDRIRAFVRSEELLTPPARESLTVAETPEYERALALSSTDSPGPFERSAAE
                     AFYYLTPPDASWGAERREDHLENFNRYQLTVTSIHEAYPGHYYQQLKSAQSPSRVRAA
                     LRSATFAEGWAHYSEQMMLDEGFGGNNPKLRLAQLNSALLRLCGYLAAVRVHTAGMSY
                     EEAVGLFEREGYLARASAEREARLAALDPVSLAATLGKAEILRLRQEWQRQLGDSFRL
                     GEFHDRLLGYGAPPLRVLRMAMLGDDGARAGGAVAAAAARPQQEEAKPVDFSVLATGA
                     HSAYEGGRAVELISGEAEWRRAWEVIGGGRPMPEVSFDTRAVVVAYQGQRPTGGYSIE
                     MAGIKRIGTVLAVSVMERRPASGDVTTQALTSPFVAVEIPRPPTGATVRFEGGGAGAE
                     AAPQQDRNRTVRPRARGARRRRGRGR"
     gene            complement(4825..>5093)
                     /locus_tag="VD968_12675"
     CDS             complement(4825..>5093)
                     /locus_tag="VD968_12675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15293.1"
                     /translation="IIVPRTETRTRFHAAQGLAVQLAITAGSIAFDLIGGVTGRNFGG
                     TIFSIAALVFLVVSCLRVWQGKPHHIAPLDDATRWLNDRITPKQ"
BASE COUNT          740 a         1721 c         1808 g          824 t
ORIGIN      
        1 gcgccaccga ctacgtctcg caggtcgaca tgcgcgccgg ctcgaccgtc agggcgccct
       61 cggcgcgtgc ggggcaggcg cgcgcggcgc gcaagtgcgc ggcgtgcgac gcggaggtcg
      121 ggcaggcgaa gttctgcccc gagtgcggca cgccgaccgc gccgcggcgc ccgacctgcg
      181 tgggctgcgg ccaccagccc gaaggcacgc ccaagttctg ccccgagtgc ggtgccaaga
      241 tgtccgttac cagttgattt ctgatttcgg gttagaaaag cggagagggt tgaagacagc
      301 atctctgtct tcaaccctct ctctttaatc cgcaatccgc gattactcca gcccggcaag
      361 ctccctttcg agggcgagga gcgttcgctt gagcatggcg cggtgggcgg ggcttgaggc
      421 acgctcgagt tgttcgagcg tgcgggcgcg ggagaggtgg actgactcca gccgctccac
      481 gcgcgcgcgc tcctcgggcg aaagctcttg agaagggcgc cgcgcggagt cgcgccagtc
      541 cttctcctcc acctgcgcct cgacggcctt gctctcccaa cctctagcca taaaattcga
      601 gagactggcg aggggcctta cggtcgcccc ttcgccagtc cccccttgcc tgagcctgcc
      661 tagtacctgt tgttgagttg cagcgagcgc agaacctggt cgaacgcctg ccggtaggtc
      721 gcgtactcgt tctgcggggc gacggccgcc atgtagaaga cctgcccgct ggagagctgc
      781 gtgactatga gcgtgacgcg ctcgttgcgg cccgtcacgg gcgagcgccc ggcgagcgtc
      841 gtcgcgagag cggcgcggcc gccgagcgcc gcgcgctgga agccgcccgt ctggcgcagg
      901 tactcgttgc cgcgcgcgct gagcaggttg ttgacgagct cgcgggccgc gccgttcagg
      961 tcgcggtact gcgtctggtc aaccgagaac atgacgccgt gcgtgatgcc ctgcccgccg
     1021 tatgcgccct cgggcgcgta ggagacggcg ttatcctgcc cgcccagctc gcgccagttg
     1081 gaaggcaccg cggcgcggaa caggctgttg ccgatgttgc ggtagctcga agacgggtag
     1141 gcgaccctct cgccgcgggc gtagccggcg tcgttcgggt agcggccgtc gttcgggtag
     1201 ttggagccgc cgccctggtt cgggtagttc tggcccgagc gcgctatctc ctccatcgtg
     1261 cgcgcccgcg ggtagccgcg gagccgcgcc tgcacgtcgc ggaagccggc cgtgtcgcgc
     1321 ctcgcagagc tcgggttgac gcgaagcatg gccgcctcct ggttgatgcg ctcgtagcgg
     1381 ttgccggggt tcgggtggct cgagagccac tcggggccgc gcgagcctcc gccctgctgc
     1441 tcgattgtgc ggaacatgtt tgcgaggtcg cgcgggtcgt agccggcgcg cgccattatc
     1501 tgcgcgccga gtatgtcggc ctgcgtctcg tacttgcggc tgtacttgag cgcgcccgcg
     1561 ccgaagccta tctggctccc tgcgccgatg atggcgccgg ggacgccgcc gatgaccgcg
     1621 cccgctatct ggccgagcac ggagccaatc tggtacttct gcgtctcggt ggcctgcgcc
     1681 gttgcgtgcc tgagcgccac gtgcgaaatc tcgtgcgcca tgacgccggc catctcgccc
     1741 tcggtgcgcg ccgcctcgat catgccgcgg ttgacgaaca tcgggccgcc gggcagcgcg
     1801 aaggcgttta tgtcgcgcgc gtcaacgacg tcgaacgagt agctgaactc cgggtgccgg
     1861 aactcggccg ggatggcgtc aacgaggcgg cggcccacct cctcgacgta gttgtctatg
     1921 tagttgtcgc gcagtatcgg catctgctga tagacctgct gcgaggcttc gcggccgagc
     1981 tgcacgtcgt cgctcacctt gtacttgttc ttcgggacct ctatgcgcgt ctgcgccagc
     2041 gcagagagcg gggcgagcag cacgagcacc gccgtcatca ccgccgacag ccggcacgaa
     2101 ccgttcggtt tgatattcgt catcttaatc accctccgta atgattaccc cgaaagcagg
     2161 aagagcggca ccgccactcc gcccgcctcg tgagccggag tgtgcgtgcc gcccgtactt
     2221 taagcgcccc gcccccggct tcttctaaag cccacgttcg tcctgtaaaa ctacaggcgc
     2281 gcgcgaggga gagagcttca actttttggt caacggcgcg ccgcaattcg tcactcaacc
     2341 cggagcgcgc cgacctatct tagatgaacc gccgcgggtg ccagttggcc ttttcttcag
     2401 cgcccgcggc ccctgcgccg cctcgcgccg cgtgcgcggg gcctcacggt tctgttgcga
     2461 tcctgttgcg gcgcagcttc cgcgcccgcc ccgccgccct cgaagcggac ggtcgcgccc
     2521 gtcggcggcc gcggtatctc tacggcgacg aagggcgaag tgagcgcctg cgttgtaacg
     2581 tctccggacg ccgggcgccg ctccatgacg ctgacagcaa gcacagtgcc aatgcgcttg
     2641 atcccggcca tctctatgct gtagccgccc gtcgggcgct gcccctgata cgccacgact
     2701 acggcgcgcg tatcgaagct gacctccggc atggggcgcc cgccgcctat cacctcccag
     2761 gcgcgccgcc actcggcctc gcccgaaatc agctcgacgg cgcggccgcc ctcatacgcg
     2821 ctgtgcgcgc cggtcgcgag cacggagaag tcaacgggct tggcctcctc ctgctgcggg
     2881 cgcgccgccg cggcggcgac cgcgccgccc gcccgcgcgc cgtcgtcgcc gagcatagcc
     2941 atcctcagca cgcgaagcgg cggcgcgccg tagccgagca ggcggtcgtg gaactcaccg
     3001 agccggaacg agtcgcccaa ctgcctttgc cactcctggc gcaggcgcag aatctccgcc
     3061 ttgccgagcg tggcggcgag cgacacgggg tcgagcgcgg cgagcctcgc ctcgcgctcg
     3121 gcgctcgcac gcgcgagata cccctcgcgc tcgaacagcc cgacggcctc ctcgtaagac
     3181 atgccggccg tgtgaaccct cacggccgcg aggtagccgc acagccgcag cagcgccgag
     3241 ttcaactgcg ctagccggag cttcgggttg ttcccgccga agccctcgtc gagcatcatc
     3301 tgctcggagt agtgggccca accttcggcg aaggtcgcgg agcgcagagc cgcgcgcacg
     3361 cgcgaaggcg actgcgcgga cttgagctgc tggtagtagt ggccggggta ggcttcgtgt
     3421 atcgaggtga ccgtgagctg gtatcggttg aagttttcga gatggtcttc gcggcgctcg
     3481 gcgccccagg aggcgtcggg cggcgtcagg tagtagaagg cttccgcggc cgagcgctcg
     3541 aaggggcctg gcgagtcggt cgaggagagc gcgagggcgc gctcgtactc gggcgtctcg
     3601 gcgacggtga ggctctcgcg cgcgggcggc gtcaaaagct cttcggagcg gacgaaggcg
     3661 cgtatgcggt cgagctcggc gcgcgcctct ccgacaaggc cctcggcggc gggccgctcg
     3721 cgcccgagca gcctgagcgc cgcctgcacg ccgcggcccg gcgcgatctg ctcggagagg
     3781 tcgcgcatct cgtcctgcgt ctcgcgcagc atgcgctcgc cctcgcgcac gagcaaggcc
     3841 gggggcgtgt ctatcatctc ctcgaagagg agcttgcggc ggaaggcgtc ggcgccgagc
     3901 cggtagtcgc cgttcgagcg cggcagaagc tcgcgcgaga gccagtcgcg gtactcctta
     3961 agcgccgcga cgacggagtc gttggcggcg tggaactcgg cgcgccgggc ggccgagagg
     4021 ccgcttccgc ccgcgcgctc gaacatctgc ggcacgacgc gctcgaagaa ggcgacgctg
     4081 cccgcggcct gctcaatcgc cgcctcggtg tggagccgcg gaggcgactg caagttctcg
     4141 cgcgcctcgg ccaggaggcg cggtatctgg cgctcgcgcg cgagcacggc gtcgaggcgc
     4201 cgctcgatgg gcgcgtaggc gcgcttgagg atgttgtcaa cgccttccga cgcgagccgc
     4261 gtgtagagcg cggggtcgcg ctgccacgtc cccgtctctt cgagatcgag gagctgcgcg
     4321 cgcgcgtgcg ccatcatgac gagagtgtcg tagcgcgact cgggggagag gcgccactgc
     4381 gggacgcgca tgagttcggc gagggccgcg cgcaggcggc gaatctcctg cgcgaccgac
     4441 tcggggctgc gtgattcgag ctgggagtcg aggtcgtgca ggcccgcggc ggtggcctcg
     4501 ccggggttga aggcgtagtg gccgcgcagg tacgactcac ctagttgcgc gacgcgagcg
     4561 tcccagagcc tgttgacgct cgactctcgc gccggcgccg tgcggcgcgt cacgcggcgg
     4621 cgctgcgcgg ccgcgtcggg gccgagcggc gcgagcgcgg cgagcgccag aagacaggcg
     4681 aaaagcttcc ttcccatgaa gcgacaaaat ctccctgagc cggggctgga ctgaaaagcg
     4741 attcgtccgt tgaagaggag acaagaaccg cggaagaaga taacacaaaa gtagtcggcg
     4801 gcaggtagaa agactttcta ccggctactg tttcggcgtt atgcggtcgt tgagccagcg
     4861 cgtggcgtcg tctagggggg ctatgtggtg gggcttgccc tgccagacgc gcaggcacga
     4921 gacgacgagg aagacgaggg cggctatgga gaagatagtg ccgccgaagt tgcgccccgt
     4981 gacgccgcct atcaggtcga aggctatcga gccggccgtg atggcgagct gcacggcgag
     5041 cccctgcgcg gcgtggaagc gcgtgcgcgt ctcagtgcgc gggacgatga tta
//
LOCUS       DASPKR010000473         4701 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_587512, whole genome shotgun sequence.
ACCESSION   DASPKR010000473 DASPKR010000000
VERSION     DASPKR010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4701)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4701
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_587512"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1966)
                     /gene="secA"
                     /locus_tag="VD968_12680"
     CDS             complement(<1..1966)
                     /gene="secA"
                     /locus_tag="VD968_12680"
                     /inference="COORDINATES: protein motif:HMM:NF009538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HYE15294.1"
                     /translation="MIDKFLTKVFGSSNQRYIKTLAPLVAEINGLEDSVKKLTDEQMR
                     ARIAEIREQVMAAIGDTTAKDDRAKDERKRRTQEALGEVLPEVFALTREASVRSTGMR
                     HFDVQLIGGIALHQGRIAEMRTGEGKTLVATLPATLNALTGRGVHVVTVNDYLATRDA
                     EWMGRIYKFLGLSVGAIVNDLDDWERKDAYGADITYGTNNEFGFDYLRDNMKFDLATC
                     VQRGHFYAIVDEVDSILIDEARTPLIISGASDEATDKYYMANGIIPSLKRAEMGPDNK
                     PGPGDYILDEKQHSAVLTEEGVDKAERLLGVGNLYDPSNMEMLHCVENALKAHTLYKL
                     DHHYVVQDGQVIIVDEFTGRLMQGRRWSDGLHQAVEAKEGVKIERENQTLATITLQNY
                     FRLYDKLSGMTGTAETEAAEFDATYKLEVAVIPTNQPMIRKDNSDVIYRTLPEKWEAV
                     VEEIIERHREGQPVLVGTVSVENSELISRRLSKAGIRHRDESANVMIEGEGIPDYHHV
                     LNAKHHEREAEIVAQAGRKGAITIATNMAGRGTDILLGGNPEFLAREHLKRQEIDPEE
                     ATDEQFREALDYIKPLVEREHKEVVALGGLHIVGTERHESRRIDNQLRGRAGRQGDPG
                     SSRFFLSLEDDLMRIFAGDKVKALMQRLGME"
     gene            complement(2156..2845)
                     /locus_tag="VD968_12685"
     CDS             complement(2156..2845)
                     /locus_tag="VD968_12685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15295.1"
                     /translation="MSKDKNLLKGDGAAARALVVYAVLGALALGALPSQAEWAAFAQA
                     QATEAGVKAGVKRPGKVNMAPLRAFLTRSKTLKEQGKLDLSKRRSLTVEGDRAEDGTL
                     SNVSVTGESSSEANFRRAANDFVSAMNESRALQFLEGVSRVRMTFTLDGERFLADTSA
                     ETPSPARAEEMARGYRMMVNIARLMSRGKEEAVVLGGMKFSSNGKQLLMTLDTPREAM
                     GNLLLKQITPN"
     gene            complement(2898..3965)
                     /locus_tag="VD968_12690"
     CDS             complement(2898..3965)
                     /locus_tag="VD968_12690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15296.1"
                     /translation="MAELFDRFEVNRVPRWPLMTRLVALSVVLHGLFFVTVAYVPTLR
                     SLLHAAGSVAGIEFVSEDYDRTLVGQRATIVKLEPYEKLYYPSDYFGPPPGEEASPTD
                     PMLITPTAPPAPPPMIIRPRRSRTPRVTATPEPTPEETAEAEATPSPTPSDADAELRA
                     DAELDKVAEANGVRRPPRINSRPFEDLAKKGKAMFEEGKVKLDGVVDVTATGQLKEDG
                     SLDRDTVKIEGLAADENLTLLAQELITAISESKVLGILEGAKDVKMSLKLDQQNVSVK
                     VMADLGSDELASRSATGYGVLLLAARAKKQGTNEGELYNRLRFGAEGKQFVMSFEMPK
                     DAAGKMIADMLAKKAEGNGKT"
     gene            4132..>4701
                     /locus_tag="VD968_12695"
     CDS             4132..>4701
                     /locus_tag="VD968_12695"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HYE15297.1"
                     /translation="MARSRKGGRRGGPRARSSPGAPRGEEGRRGPHQGGARSGPSPKE
                     AARAAASDADAASRLASRQARTRPLRELLEGIGAPAPSPFKPDPFQLEALAALESEDV
                     LVTAPTGSGKTWIAREEIRRLLEQGKRAWYTSPLKALTNSKYHEFTAEFGEGRVGILT
                     GDRKERSDAPLIVGTTEVYRNQLFDALRGG"
BASE COUNT          691 a         1548 c         1606 g          856 t
ORIGIN      
        1 tctccatccc cagacgctgc atcagtgcct tcaccttgtc gcccgcgaag atgcgcatga
       61 ggtcgtcttc gagcgagagg aagaaacgac ttgagccggg gtcgccctgt cggcccgcgc
      121 gcccgcgcaa ctggttgtct atgcggcgcg actcgtggcg ctcggtgcct acgatgtgca
      181 ggccgccgag cgcgacgacc tccttgtgct cgcgctcgac gagcggcttg atgtagtcga
      241 gggcctcgcg gaactgctcg tcggtcgcct cttccgggtc aatctcctgg cgcttgaggt
      301 gctcgcgcgc gaggaactcg gggttgccgc cgagcagtat gtccgtgccg cggccggcca
      361 tgttggtcgc gatggtgatg gcgcccttcc gcccggcttg cgcgactatc tcggcctcgc
      421 gctcgtggtg cttggcgttg aggacgtggt ggtagtcggg tatcccctcg ccctcaatca
      481 tcacgttggc gctctcgtcg cggtggcgta tgcctgcctt cgagagccgg cgcgagatca
      541 gctcggagtt ctcgaccgac acggtgccga cgagcacggg ctggccctcg cggtggcgct
      601 cgattatctc ctcgacgacg gcctcccact tctcggggag cgtgcggtag ataacgtccg
      661 agttgtcctt gcggatcatc ggctggttcg tcgggatgac ggcgacttcg agcttgtagg
      721 tggcgtcgaa ctcggcggcc tccgtctcgg ccgtgcccgt catgcccgag agcttgtcgt
      781 aaaggcggaa gtagttctgt aaggtgatgg tggcgagcgt ctggttctcg cgctcgatct
      841 tgacgccctc cttcgcctcg acggcctggt gcaggccgtc cgaccagcgg cggccctgca
      901 tgaggcggcc cgtgaactcg tcaacgatga tgacctgccc gtcctgcacg acgtagtggt
      961 ggtcgagctt gtagagcgtg tgcgccttga gcgcgttctc tacgcagtgc agcatctcca
     1021 tgttcgacgg gtcgtagagg ttgccgacgc cgagcaggcg ctcggccttg tcaacgccct
     1081 cctccgtgag cacggccgag tgctgcttct cgtctaggat gtagtcgccg gggccgggct
     1141 tgttgtccgg ccccatctcg gcgcgcttca ggctcgggat gatgccgttg gccatgtagt
     1201 acttgtcggt cgcctcgtcg gacgcgcccg agatgatgag cggggtgcgg gcctcgtcaa
     1261 tgaggatgga gtcaacctcg tccacgatgg cgtagaagtg gccgcgctgg acgcaggtgg
     1321 cgaggtcgaa cttcatgttg tcgcgcaggt agtcgaagcc gaactcgttg ttggtgccgt
     1381 aggttatgtc ggcgccgtag gcgtccttgc gctcccagtc gtctaggtcg ttgacgatgg
     1441 cgccgaccga gaggccgagg aacttataaa tgcgccccat ccactcggcg tcgcgcgtgg
     1501 ctaggtagtc gttgacggtg acgacgtgga cgccgcggcc cgtcagggcg ttcagggtcg
     1561 cgggcagagt ggcgacgaga gtcttgccct cgcccgtcct catttcggcg atgcggccct
     1621 ggtgcaaagc tatgccgccg atgagctgca cgtcgaagtg gcgcatgccc gtcgagcgca
     1681 ccgaagcctc gcgcgtgagc gcgaagacct cgggcagcac ctcgccgagc gcctcctgag
     1741 tgcggcgctt gcgctcatct tttgcgcggt cgtctttggc cgtcgtgtcg ccgatggccg
     1801 ccatgacctg ctcgcgaatc tcggcgatgc gcgctcgcat ctgctcgtcc gtgagcttct
     1861 tcaccgagtc ttcgaggccg tttatctcgg cgacgagcgg cgcgagcgtc ttgatgtagc
     1921 gctggttgct gctgccgaaa actttcgtca gaaatttatc tatcatcacc ttaatcctgt
     1981 gcgggcgggg cgtgtcgccc gcctgctcgg cgcgcgccgc cggaaaggtt cgggaaccct
     2041 cccgcccgtc actacagcgg cggcgcgcag ttattcgact ttcgattgta tgtgagcggt
     2101 aggggcgagg caaggcgcgc tgccgtgcga gtcggcgcgc cccgccccgg agtgcttagt
     2161 tgggtgttat ctgcttgagc aggaggttgc ccatcgcctc gcgcggcgtg tcgagggtca
     2221 tcagaagctg cttgccgttc gaggagaact tcatgccgcc gagcacgacg gcctcctcct
     2281 tgccgcggct catcaggcgc gcgatgttga ccatcatgcg gtagccgcgg gccatctctt
     2341 cggcgcgcgc gggcgagggc gtctcggccg aggtgtcggc gaggaagcgc tcgccgtcga
     2401 gcgtgaatgt catgcggacg cgcgagacgc cttcgaggaa ctgaagcgcg cggctctcgt
     2461 tcatcgcgga gacgaagtcg ttcgccgcgc ggcggaagtt cgcctccgat gaagactcgc
     2521 ccgtgaccga gacgttcgag agcgtgccgt cctcggcgcg gtcgccctcg accgtgagcg
     2581 agcggcgctt cgacaaatcg agcttgccct gctccttgag cgtcttcgag cgcgtgagga
     2641 aggcgcgcag aggcgccatg ttgaccttgc ccggccgctt gacgccggcc ttgacgcccg
     2701 cctcggtcgc ctgcgcctgc gcgaaggccg cccactcggc ctgcgagggc agggcgccca
     2761 gcgcgagcgc gcccagcacc gcatagacca cgagagcgcg cgccgccgcg ccgtcgccct
     2821 tcaagaggtt tttatctttc gacatcacct taagcacgat aacacaaaag cgcgcgccgg
     2881 cgccggctcg gcgcattcta agtcttgccg ttcccctcgg ccttcttcgc gagcatgtcg
     2941 gcgatcatct tgccggcggc gtccttcggc atctcgaagg acatgacgaa ctgcttgccc
     3001 tcggcgccga agcgcaggcg gttgtagagc tcgccctcgt tcgtcccctg cttcttggcg
     3061 cgtgcggcga gcaggagcac gccgtagccg gtggccgacc tcgacgcgag ctcgtccgac
     3121 ccaaggtcgg ccatcacctt gacggagacg ttctgctggt cgagcttgag cgacatcttc
     3181 acgtccttcg cgccctcgag tatgccgagc accttgctct cgctgatggc cgtgatcagc
     3241 tcctgcgcca gaagcgtcag gttctcgtcc gcggcgaggc cctctatctt gacagtatcg
     3301 cggtcgagcg agccatcctc cttgagctgc ccggtggccg tcacgtcaac gacgccgtcg
     3361 agcttgacct tgccctcctc gaacatggcc ttgcccttct tcgccaagtc ctcgaagggg
     3421 cgcgagttga tgcgcggcgg ccgcctgacg ccgttggcct cggccacctt gtccagctcg
     3481 gcgtccgccc gaagctcggc gtcggcgtcc gagggcgtgg gcgaaggggt cgcttcggcc
     3541 tcggccgtct cctccggcgt gggctcgggc gtcgcggtca cgcgcggcgt gcgcgagcgg
     3601 cgcgggcgta tgatcatcgg cggcggcgcc ggcggcgcag tcggggttat gagcatcggg
     3661 tctgtcggcg aagcctcctc gccggggggc gggccgaagt agtccgacgg gtagtagagc
     3721 ttctcgtagg gctccagctt gacgatggtc gcgcgctggc cgacgagcgt gcggtcgtag
     3781 tcttcgctga cgaactcgat gccggcgacg gagcccgcgg cgtgcaggag gctgcgcagc
     3841 gtcgggacgt aggcgacggt gacgaagaag aggccgtgca gcacgacaga gagcgccacc
     3901 agccgcgtca tcagcggcca gcgcggcacc ctgtttacct cgaacctgtc gaaaagctca
     3961 gccatcgcta gaccaaacaa gaagaaggcc cggcgctaaa tccggcgccg agcgacgaac
     4021 cgcaaacctg aaggcttaga cgcttaatgt gctccgggag ttgcgaaagt cacacaaaag
     4081 ttaccattac gcgggcgcgc tcgaaaagtt cgtgcgctac aatccggcct catggcacgt
     4141 tcgcgcaagg gcgggcgaag gggcggcccc cgcgcacgca gcagccccgg cgccccgcgc
     4201 ggggaggaag gccggcgcgg ccctcatcaa gggggcgcgc gtagcggccc gagcccgaaa
     4261 gaggccgcgc gcgccgccgc ctccgacgcc gacgccgcct cgcgactcgc gagccgtcag
     4321 gcgcgcacgc ggccgctcag ggagctgctc gaaggcatcg gcgcgcccgc gccgtcgcct
     4381 ttcaagcccg acccgttcca gctcgaagcg ctcgcggcgt tggagagcga ggacgtgctc
     4441 gtgacggcgc ccacggggag cggcaagacc tggatcgcgc gcgaggagat acgccgcctg
     4501 ctggagcagg gcaagcgcgc gtggtacacg agccccttga aggcgctcac aaactcgaaa
     4561 taccacgagt tcacggccga gttcggcgag ggccgcgtag gcatactcac cggcgaccgc
     4621 aaggagcgct ccgacgcccc tctcatcgtc ggcacgaccg aggtctatcg caaccagctc
     4681 ttcgacgccc ttcgcggcgg c
//
LOCUS       DASPKR010000474         5883 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1749595, whole genome shotgun sequence.
ACCESSION   DASPKR010000474 DASPKR010000000
VERSION     DASPKR010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5883)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5883
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1749595"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1657
                     /locus_tag="VD968_12700"
     CDS             <1..1657
                     /locus_tag="VD968_12700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15298.1"
                     /translation="KAISQFVADAHAAGVRHVVPYISPITMFGDADARLGFFEFYDRW
                     GEYERAFQLGPRPAGDPVSWAQQDPEGDVAFTMGEKQKLGSMRRYSMCVNNPGWRQWQ
                     MIVARWAARAGYDGLFMDNVLVHRCYCRYCEAVARELGVSLKDDRGRKLTWVESYLRY
                     FDDLRREGERERRGFYLAGNYIELPFQRPVTDRLDLSMVEKVWLGSPRLLWPGGIWTG
                     FYPPAQRTLNNRTRGNEEAQSLNNIWLAQLSYAVRGSRGAHLLYGGQAANRGPEFAHN
                     EESATLALAEGAAFGGGVSVTVVSGSPFIKETNLPAHDARRAFHAFARQRRQLFEGLL
                     PAGDVALLVFTDRLEIESVLEAQQVHESLLWGGALVDVLDGETASEQQLARYKLVVVA
                     GRPELPGWLRSLPQLVRSEDPIAESEVRAVKRNYQRERAVEALRRTGLSAAVARRAAQ
                     LRAVNAPAGSLVQAAAWGDERRTVLHLLNFKVPIGHEAGGAARPAGDISVRLPLPAGK
                     RPRRVEFHSPEAASAPVRFQEEKGAIVFRPPAFRAYGVCEVVY"
     gene            2297..2953
                     /locus_tag="VD968_12705"
     CDS             2297..2953
                     /locus_tag="VD968_12705"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYE15299.1"
                     /translation="MDALAAKNDSVALSLLALSHSQIEHRLYEVLLAETSAAGTCVGT
                     FSLRRLLELSRLGSYTTVRRARSGLITKLSIDCPPVAGDGNGAKGSSHVYLVFRPEEI
                     FERRRRAGLAPYPKGYEEPEKYSGISVAIERVVSWHNLSRREAQVALCCAEGLTNSEI
                     AERLSITEQTVKFHLSRVFEKFGVRRRGELISRLLRQDGNGDGAAARGLEGVGAEPAA
                     "
     gene            3105..3383
                     /locus_tag="VD968_12710"
     CDS             3105..3383
                     /locus_tag="VD968_12710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15300.1"
                     /translation="MAATKKNRKKKSKSTALIVCQDGKQFWTTQKQFWQWARDGVLVK
                     VGDNPLTGSLKREHEETVVVLSNTLLNLAHPNHLRETLDAKRRRLPQK"
     gene            3489..5240
                     /locus_tag="VD968_12715"
     CDS             3489..5240
                     /locus_tag="VD968_12715"
                     /inference="COORDINATES: protein motif:HMM:NF004040.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional sulfate
                     adenylyltransferase/adenylylsulfate kinase"
                     /protein_id="HYE15301.1"
                     /translation="MITPYGGRLVDLLVADEERADLRAHAATLTRVQLTARNVCDLEL
                     LATGAFSPLTRFMGAADYRRVLEEMRLADGTLFPMPVTLTVRRDALPEIGSEVALTDQ
                     HNNTLAVMRIEEVFEWDRAEEARRAYGTEDVRHPLVAEMNSWGELCVSGELRVLQLPI
                     YYDFKSLRLTPAQARERLSALGHPNVVAFQTRNPLHRAHEELTARAARDINGALLLHP
                     VVGLTKPGDIDHFTRVRSYRVLAERYYDPSRMMLALLPLAMRMAGPREALWHAVIRRN
                     YGANHLIVGRDHASPGKDSQGRPFYGPYDAQELVARHAEETGVKPMPFSELLYIPEED
                     RYEEVSRIPEGKRTASISGTEVRENYLQRGKTLPGWFTRPEVASILQQAHPPRHRQGF
                     CLWFTGLSGAGKSTTAEIVAIKLLEHGKQITMLDGDVVRTHLSKGLGFSKEDRDTNIR
                     RIGFVAAEIVRHGGGVICAAVSPYRATRNECRTMTGGDRFIEVFVDTPLGVCEDRDVK
                     GMYRQAREGKIKNFTGIDDPYEAPLHAEITIDTVSRTAEQNADLIVAYLVEQGFVRPA
                     LAETEEAEEAAEAVTAG"
     gene            5505..>5883
                     /locus_tag="VD968_12720"
     CDS             5505..>5883
                     /locus_tag="VD968_12720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15302.1"
                     /translation="MFGMHRPRAARLRGVVAVALASFLLMQFALPPTRTALADTGGGT
                     ILLNGPNATATEDFNTLANTAGTTHTTLPLGWYITETGGSARDNEAYSVGTGSATDGD
                     TYSFGPSGNTDRALGELTTGTLQS"
BASE COUNT         1016 a         2054 c         1951 g          862 t
ORIGIN      
        1 caaggccatc tcgcagttcg tcgcggacgc gcacgccgcc ggcgtccggc acgtcgtccc
       61 ttacatctcg ccgattacga tgttcggcga cgccgacgcg cgcctcggct tcttcgagtt
      121 ctacgaccgc tggggcgagt acgaaagggc cttccagctc ggcccgcgcc cggcgggcga
      181 ccccgtctcc tgggcgcagc aagacccgga gggcgacgtg gcattcacga tgggcgagaa
      241 gcagaagctc ggctcgatgc gccgctacag catgtgcgtc aacaaccccg gctggcggca
      301 gtggcagatg atagtggcgc gctgggcggc gcgcgccggc tacgacggcc tgttcatgga
      361 caacgtgctg gtgcaccgct gctactgtag gtactgcgag gcggtcgcca gggagctggg
      421 cgtgagcctc aaggatgacc gcgggcgcaa gctcacctgg gtcgagagct acctgcgcta
      481 cttcgacgac ctgcggcgcg agggcgagcg cgagcgccgc ggcttctacc tggccggcaa
      541 ctacatagag ctgccgttcc agcgccccgt tacagaccgc ctggacctct cgatggtcga
      601 gaaggtctgg ctcggctcgc cccgcctgct ctggccgggc ggcatctgga cgggcttcta
      661 cccgcccgcg cagaggacgc tcaacaaccg cacgcgcggc aacgaggagg cgcagtcgct
      721 caataacatc tggctggcgc agctctccta cgccgtccgc ggctcgcgcg gcgcgcacct
      781 gctctacgga gggcaggcgg cgaacagggg gccggagttc gcgcacaacg aggaatcggc
      841 cacgctcgcc ctcgccgagg gcgcggcctt cggcgggggc gtctccgtca cggtcgtctc
      901 cggctcgccc ttcataaagg agaccaacct cccggcgcac gacgcgcgca gggccttcca
      961 cgccttcgcg cgccagcgcc ggcagctctt cgagggcctc ctgcccgcgg gcgacgtggc
     1021 gctgctcgtc ttcacagacc ggctcgagat cgagtcggtg ctcgaggcgc agcaggttca
     1081 cgaatcactc ctttggggcg gcgcgctcgt ggacgtgctc gacggcgaga ctgcctccga
     1141 gcagcagctc gcccgctaca agctcgtcgt cgtcgcgggc cggcccgagc ttccgggctg
     1201 gctgcgctcg ctgccgcagc tcgtccgcag cgaagacccc atcgccgaat cggaagtgcg
     1261 cgccgtcaag aggaactacc agcgcgagcg cgccgtcgag gccctgcggc gcacggggct
     1321 ctccgccgcc gtcgcgcgca gggccgcgca gctccgggcc gtgaacgcgc ccgccggctc
     1381 gctcgtgcag gccgccgcgt ggggcgacga gcgccggacg gtgctacacc tgctcaactt
     1441 caaagtcccc atcgggcacg aggccggggg cgcggcccgt cccgcgggcg acatctcggt
     1501 gaggctcccg ctgccggcgg gcaagcgccc gcgccgcgtc gagttccact cgccggaggc
     1561 ggcgagcgcg cccgtcaggt tccaggagga gaagggcgcg atagtcttca ggccgcccgc
     1621 cttccgcgcc tacggcgtct gcgaggtcgt ctattgaagc cggcaatcaa ccttcaaggt
     1681 tagttttgtg gcgcggttgt acagtagcgc tcggaggggc ggccggggcg cgcgactctc
     1741 gtcgtgaagg tgcgcgggcc gggcgcgaat ctgggccata aagcctaaag tcgagattgc
     1801 acttgacagc aggatttttt ccgttaaaat tcacacgctt ttcgggccgc acgacttcga
     1861 ctcccacagg ggtcgcgtgc ctcactcgtt tagagcctct ttaatttctg ttgaagcctc
     1921 ggtagaaatt cccggccacc cggccgtttg acaacagggc tggaagttaa agcgtgcgcg
     1981 ctcgccagcc tttttataaa tcgaaagtag aggcgtttga acagcgccgt ccccgcgggg
     2041 ccgacccgct tgaagggctc gccggacgtc tccgtgccga aatttgtcat catccgtcat
     2101 caagtgaaca agcgaccgaa actccccgca gcaaccgcaa ccgagccgcc gtgttcagct
     2161 ttctggacga tcagcagtaa ataaaggcaa ggcagaaccg ctcgctccgc ttacgccggg
     2221 ccgccgaagg gccgggggaa ggggacggcg ggccgtcggg gctcaaaacc gtccgggcgg
     2281 gctcttgtcg tcgagaatgg acgcactggc agcaaaaaac gattcggtgg cgctgtcgct
     2341 cctggcgctc agccactcgc agatagagca caggctctac gaggtgctgc tcgccgagac
     2401 ttcggcggcc ggcacctgcg tcggcacttt cagcctgcgc cgcctgctcg aactgtcgcg
     2461 gctgggcagc tacacgaccg tgcggcgggc gcgctccggg ctcatcacga aactgagcat
     2521 tgactgcccg cccgtggccg gcgacggcaa cggcgcgaag ggctcgagcc acgtctatct
     2581 cgtcttccgc cccgaggaga ttttcgagcg gcgcaggcgc gccggcctcg ccccgtaccc
     2641 gaagggctac gaggagcctg agaagtattc gggcatctcg gtcgcaatcg agcgcgtggt
     2701 gagctggcac aacctgagcc ggcgcgaggc gcaggtggcg ctgtgttgcg ccgaggggct
     2761 cacgaactcc gagatagccg agaggctcag catcacggag cagaccgtca agttccacct
     2821 gagccgcgtc ttcgagaagt tcggagtgcg ccgccgaggt gagcttatct cgcggctgct
     2881 caggcaggac ggaaacggcg acggcgcggc ggcgcgcggg ctcgaagggg tgggcgccga
     2941 gcccgccgcc tgacgcgcgc cgcccgcccg aagttacaac cgagcgcgcc ccgcgtgcgg
     3001 ggcttcccta cggggtacgg cgtgacgggc ttcccggcct gaaagggcct gacgggaaag
     3061 cctaagggca tgcgacgccg taggcgcgcc cggagggccg aaggatggcg gcgacgaaga
     3121 agaacaggaa gaagaagagc aagagcacgg ctctcatcgt ctgccaggac ggcaagcagt
     3181 tctggactac gcagaagcag ttctggcagt gggccagaga cggcgtgctc gtcaaggtcg
     3241 gcgacaaccc cctgaccggc tcgctcaagc gcgagcacga ggagacggtc gtcgtgctca
     3301 gcaacaccct tttgaacctc gcgcacccga accacttgcg cgagacgctc gacgccaagc
     3361 ggcgccgtct cccgcagaag taggccgcgc gcggccgagt taagtccccc ggagttctta
     3421 cgggcaataa tcgaacgtca agaaaggaca gaagaaaaac agtgaacccc gatagtaaag
     3481 aggcgaagtt gataaccccc tacggcgggc gtctcgttga cctgttggtt gcggacgaag
     3541 agcgcgccga cctgcgcgcg cacgccgcca cgctcacgcg cgtgcagctc accgcccgca
     3601 acgtctgcga cctcgagctt ctcgcgaccg gcgcattctc gccgctcacg cgcttcatgg
     3661 gcgcggccga ctaccgccgc gtgctcgaag agatgcgcct cgccgacggc acgctcttcc
     3721 ccatgcccgt cacgctcacc gtccggcgcg acgcgctgcc ggagatcggc tccgaagtgg
     3781 cgctcaccga ccagcacaac aacacgctgg ccgtcatgcg catcgaggag gtcttcgagt
     3841 gggacagggc cgaggaggcg cgccgcgcct acggcaccga ggacgtccgc cacccgctcg
     3901 tcgccgagat gaactcgtgg ggcgagctgt gcgtctcggg cgagctgagg gtgctacagc
     3961 tccccatcta ctacgacttc aagtcgctcc gcctcacccc ggcgcaggcg cgcgagcgcc
     4021 tctccgcgct cggccacccg aacgtcgtgg ccttccagac gcgcaacccg ctgcaccgcg
     4081 cgcacgagga gctgacggcg cgcgccgcgc gcgacatcaa cggcgcgctc ctcctgcacc
     4141 cggtcgtggg cctgacgaag cccggcgaca ttgaccactt cacgcgcgtc cgctcctacc
     4201 gcgtgttggc cgagcgctac tacgacccgt cgcgcatgat gctggcgctg ctgcctctgg
     4261 cgatgaggat ggccgggccg cgcgaggctc tgtggcacgc cgtcatacgg cgcaactacg
     4321 gggcgaacca cctcatcgtc gggcgcgacc acgcgagccc cggcaaggac tcgcagggca
     4381 ggcccttcta cggcccctac gacgcgcagg agctggtcgc caggcacgcc gaggagacgg
     4441 gcgtaaagcc gatgcccttc tccgagctgc tttacatccc cgaggaggat cgctatgagg
     4501 aggtctcgcg catacccgag ggcaagcgca cggcctcgat ttcggggacg gaggttcgcg
     4561 agaactacct acagcgcggc aagaccctgc ccggctggtt cacgcgcccc gaggtcgcct
     4621 ccatccttca gcaggcgcac ccgccgcgcc accgccaagg cttctgcctc tggttcacgg
     4681 ggctttcggg cgcgggcaag tcaacgacgg ccgagatagt cgccatcaag ctcctggagc
     4741 acggcaagca gataacgatg ctcgacggcg acgtggtgcg cacgcacctg tcgaagggcc
     4801 tcggcttctc gaaggaagac cgcgacacga acatccgccg catcggcttc gtcgccgcgg
     4861 agatagtccg ccacggcggc ggcgtcatct gcgcggcggt gagcccctac cgcgccacgc
     4921 gcaacgagtg ccgcacgatg acgggcggcg accgcttcat cgaggtcttc gttgacacgc
     4981 cgctcggcgt ctgcgaagac cgcgacgtga agggcatgta ccggcaggcc cgcgaaggca
     5041 agattaagaa cttcacgggc attgacgacc cttatgaggc tccgctgcac gccgagataa
     5101 ccattgacac cgtctcgcgc acggccgagc agaacgcaga cctcatcgtg gcctacctcg
     5161 tcgagcaggg cttcgtccgc cccgcgctcg ccgagacgga ggaggccgaa gaggcggccg
     5221 aggccgtcac ggccgggtag ggcgcccggc cgccgtgtaa tttagggcgg cgggggcggg
     5281 gtttcggccc cgcccccgcc gccccattta aggctgggca caggagcggt tttgtagtac
     5341 tttcacgccg cccggaaaag acatcttcga cgggatcacc ataacgcggc gttcacccac
     5401 gccgtttata gccgccggcc ggcggccctc gcagtccgaa taggcgcctt ccacccgagt
     5461 cgcaaaactc cgcacgcgac cgctaagaga aaggatgccc ccgtatgttc ggaatgcacc
     5521 gcccccgcgc cgcgcgccta cgcggcgtcg tcgccgtcgc tctcgcttct ttcctgctca
     5581 tgcaattcgc tctcccgccc acgcgcacag ccctggcaga cacgggcggg ggcactatcc
     5641 tgctcaacgg cccgaacgcg acggcgaccg aggacttcaa cacgctcgcc aacacggcgg
     5701 gtacgacgca cacgacgctc ccgctcggct ggtacatcac cgagacgggc ggcagcgcta
     5761 gggacaacga ggcgtactcc gtcggcaccg gcagtgccac cgacggcgac acctacagct
     5821 tcggcccgtc gggcaacacc gaccgcgccc tcggagagct tacgaccggc accctacaga
     5881 gca
//
LOCUS       DASPKR010000475         3243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_200872, whole genome shotgun sequence.
ACCESSION   DASPKR010000475 DASPKR010000000
VERSION     DASPKR010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3243)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3243
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200872"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..782
                     /gene="hutU"
                     /locus_tag="VD968_12725"
     CDS             <1..782
                     /gene="hutU"
                     /locus_tag="VD968_12725"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: protein motif:HMM:TIGR01228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HYE15303.1"
                     /translation="SMARHVEAMLALKRAGAIAFDYGNNIRKQALDAGVADAFEIPGF
                     VPEYIRPLFCEGKGPFRWVALSGDAEDIRRTDDLALELFPEDRTLDRWLRLARDRVQF
                     QGLPARICWLGLGERAEMGEAINELVKRGELKAPVAIGRDHLDTGSVASPFRETEGMR
                     DGTDAVADWPILNALLNTASGASWVSFHHGGGVGIGYSLHAGQVSVADGTDDAARRLN
                     RVLTNDPGIGVARHVDAGYEEAELTAREKGLKIPMLGEGYE"
     gene            796..1158
                     /locus_tag="VD968_12730"
     CDS             796..1158
                     /locus_tag="VD968_12730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15304.1"
                     /translation="MSHVAPARPTPWGWMIAATCALTAATLVVFGAIGGLMLLVALNG
                     VSESRGGLIIVIYAVVVLAGNFAAAALVNWLIARRRYAGTRGAGWAPLLIALGVTAVT
                     ALVGPPLAVLLINLLFSR"
     gene            1224..2192
                     /locus_tag="VD968_12735"
     CDS             1224..2192
                     /locus_tag="VD968_12735"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase family protein"
                     /protein_id="HYE15305.1"
                     /translation="MRGEKIGPGLLIALLLSAALLSAPGARAQAPAQSPGAPTAARPA
                     GSSPSVERVAFESRLIGAPLPYNVVLPAGYNSAESSGVRYPVLYLLHGLGGSAADWVS
                     HRARLAEHAAAHSIIIVVPEGRDGWYTDAAGAGPDRRFESYFLEELMPDVERRFRTLA
                     LRGGRAVAGLSMGGYGALKFGLKHPERFALAASMSGALGVASWLPEHPLPEFVKPSVA
                     RVFGAADSPVRRANDIFRIVRDLPAERVAALPHIYLDCGTEDFLISNNRDFSALLLER
                     KVPHEYRQLPGTHNWQYWDRQVREILELASQRLSQPARPAQAGARP"
     gene            2205..>3243
                     /locus_tag="VD968_12740"
     CDS             2205..>3243
                     /locus_tag="VD968_12740"
                     /inference="COORDINATES: protein motif:HMM:NF024626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4037 domain-containing protein"
                     /protein_id="HYE15306.1"
                     /translation="MADFIKGIELSRLFFEEAVAPLLEAEFPGLRYAAALIGSGSEVL
                     GFDTEMSADHGWGPRVDLFLAEEDYGAAREPLDDALRRRLPYEFRGYPTNFSEPDPED
                     NGTQLLVEVSEGPVNHKVDITTPRRFFLNYLGFDIEREIEPADWLTFPEQKLRTIKAG
                     GVFRDTVGLEGVRRRFAYYPEDVWLYLLASGWARVGQEEHLMGRAGQAGDEIGSALIG
                     ARLVRDIMRLCFLMERQYAPYAKWFGTAFRQLACSAELSPRLRAALSSETWQERERHL
                     CAAYEMVARMHNALGITEPLPTSPRGFFGRPFRVIALHGFERAILSRVGDESVRRIAA
                     RPPIGGIDQFSD"
BASE COUNT          479 a         1140 c         1119 g          505 t
ORIGIN      
        1 actcgatggc ccgtcatgtc gaagcgatgc tcgctctgaa gcgcgcgggc gcaatcgcgt
       61 ttgattacgg caacaacatc cgcaagcagg cgttggacgc gggcgtggcc gacgccttcg
      121 agattcccgg cttcgtcccc gagtacatcc gcccgctttt ctgcgagggc aaggggcctt
      181 tccgctgggt cgcgctttcg ggcgacgccg aagacatccg ccgcaccgac gacctcgcgc
      241 tcgaactctt ccccgaagac cggacgctcg accgctggct ccggctcgcg cgcgaccgcg
      301 tgcagttcca ggggctgccc gcgcgcatct gctggctggg cctgggcgag cgcgccgaga
      361 tgggcgaggc gataaacgag ttggtgaagc gcggcgagtt aaaagcgccc gtcgccatcg
      421 ggcgcgacca cctggacacg ggctccgtcg cctcgccctt ccgcgagacg gaagggatgc
      481 gcgacggcac cgacgccgtc gccgactggc ccatcctcaa cgcgctcctg aacacggcta
      541 gcggcgcctc gtgggtctcg ttccaccacg gcggcggcgt aggcatcggc tacagcctgc
      601 acgccggcca ggtctccgtc gccgacggca cggacgacgc ggcccgccgc ctcaaccgcg
      661 tgctgaccaa cgaccccggc atcggcgtcg cccgccacgt ggacgccggc tacgaggagg
      721 cagaactgac tgcgcgcgag aagggtttga agattccgat gctaggggag ggctacgaat
      781 gaaggggacg aggctgtgag ccacgtcgcg cccgcgaggc cgacgccgtg ggggtggatg
      841 attgcggcga cgtgcgcgtt gacggccgcg acgctcgtcg tgttcggggc gataggcggg
      901 ctgatgctgc tcgtcgcctt aaacggcgtg agcgagtcgc gcggcgggct catcatcgtc
      961 atatacgccg tcgtcgtgct cgccgggaac ttcgccgccg cggcgctcgt caactggctc
     1021 atcgcgcgcc gacgctacgc cggcacgcgc ggggccggct gggcgccgct gctcatcgcg
     1081 ctcggcgtga cggccgtgac ggcgctcgtc ggccctccgc tcgccgtcct tctaatcaac
     1141 ctcctgttct cgcgctgaag ctcgatgaag gtgtcgccgt tagggcgggc ggcgcaagaa
     1201 aagaggagag ccaggaacca gccatgaggg gcgagaagat agggcccgga ttattaatcg
     1261 cgctgctttt gtcggcggcg ctgctgtcgg cgccgggcgc gcgggcgcag gcgccggctc
     1321 aaagccccgg agcgccgacg gccgcgcggc ccgccggctc gtcgccgagt gtcgagcgcg
     1381 tggcgttcga gagcaggctg ataggcgcgc cgctgcctta caacgtcgtg ctgcccgcgg
     1441 gctacaactc ggccgagtcg agcggcgtgc gctaccccgt gctctacctg ttgcacgggc
     1501 tcgggggcag cgcggccgac tgggtttcgc accgcgcgcg cctcgccgag cacgccgccg
     1561 cccactccat catcatcgtc gtccccgaag gccgggacgg ctggtacacg gacgccgccg
     1621 gcgcggggcc cgaccgccgc ttcgagagtt acttcctgga ggagctgatg ccggacgtgg
     1681 agcgccgctt ccgcacgctc gccttgcgcg gggggcgggc ggtcgccggc ctctcgatgg
     1741 gcggctacgg cgcgctcaag ttcgggctca agcacccgga aaggttcgcg ctcgccgcct
     1801 cgatgagcgg cgcgctgggc gtggcgtcgt ggctgccgga gcacccgctg cccgagttcg
     1861 tgaagccctc ggtcgcgcgc gttttcgggg cggcagacag ccccgtgcgg cgcgccaacg
     1921 acatcttccg catcgtgcgc gaccttccgg ccgagcgcgt cgccgcgctc ccccatatct
     1981 acttggactg cggcacggaa gactttctca tctcgaacaa ccgcgacttc tcggcgctgc
     2041 tgcttgagcg caaggtgccg cacgagtacc gccaactgcc cggcacgcac aactggcagt
     2101 actgggacag gcaggttcgc gagattctcg agctcgcctc gcagaggctc tcgcagcccg
     2161 cgcgcccggc gcaggccggg gcgcggccat aagtttcacg gcgcatggcc gacttcataa
     2221 aaggtattga gctgagccgg ctcttcttcg aggaggcggt cgcgcctctg ctcgaagcgg
     2281 agttccccgg cctgcgctac gcggcggcgc tcataggctc gggctccgag gtgctcggct
     2341 tcgacacgga gatgagcgca gaccacggct gggggccgcg cgttgacctc ttcctcgccg
     2401 aagaggatta cggcgccgcg cgcgaacccc tcgacgacgc gctgcggcgg cggctgccgt
     2461 acgagttccg cggctacccc acaaacttct cggagcccga ccccgaagac aacggcacgc
     2521 agctcctcgt cgaggtgtcg gaaggccccg tcaaccacaa ggtcgatata acgacgcctc
     2581 gccgcttctt cctgaactac ctcggcttcg acatcgagcg cgaaatcgag ccggccgact
     2641 ggctcacctt ccccgagcag aagctgcgca cgataaaggc gggcggcgtc ttccgcgaca
     2701 cggtcgggct cgagggcgtg aggcgccgct tcgcttacta ccccgaagac gtttggctct
     2761 acctgctcgc ctccggctgg gcgcgcgtcg gtcaggagga acacctgatg gggcgcgccg
     2821 gccaggccgg cgacgagata ggctcggcgc tcataggcgc gcggctcgtc cgcgacatca
     2881 tgcggctctg cttcctcatg gagcgacagt acgcgcctta cgcgaagtgg ttcggcacgg
     2941 ctttccgtca gctagcgtgc tcggctgagc tttcgccgcg cctgcgcgcc gcgctctcgt
     3001 ccgagacgtg gcaagagcgc gagcgccacc tgtgcgccgc atacgagatg gtggcgcgca
     3061 tgcacaacgc actagggata acggagccgc tgccgacgag cccgcgcggc ttcttcggcc
     3121 gcccgttccg cgtgattgcc ctccacggct tcgagcgtgc gatactctcg cgcgtcggcg
     3181 acgagtctgt gcggcgcatc gccgcccgcc cgcccatcgg cggcatagac cagttcagcg
     3241 aca
//
LOCUS       DASPKR010000476         3494 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1105283, whole genome shotgun sequence.
ACCESSION   DASPKR010000476 DASPKR010000000
VERSION     DASPKR010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3494)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3494
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1105283"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..790
                     /locus_tag="VD968_12745"
     CDS             <1..790
                     /locus_tag="VD968_12745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017953234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE15307.1"
                     /translation="FEAGLIGRAEAGARPVIQFEGVNKTYTMGDVEVHALRGVSLTIR
                     EGEFVAVMGASGSGKSTMMNIIGCLDRPTRGRYVLDGADVSSLSKDERADIRNSKLGF
                     VFQGFNLLSRTSALENVELPMLYAGVGAAERERRAREALHSVGLAGREQNHSNQLSGG
                     QQQRVAIARALVNNPKLILADEPTGALDSRTSVEVMEIFQRLNRERGITLVLVTHEQD
                     IAEHADRVVVFKDGRVRKDYRVDAPRDAARELAGLPPAGFDEED"
     gene            840..2066
                     /locus_tag="VD968_12750"
     CDS             840..2066
                     /locus_tag="VD968_12750"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE15308.1"
                     /translation="MNAQGTLRIAFRALARNKMRAALTMLGVIIGVSAVIAMVSIGQG
                     AQAAVQAQIEGMGTNLLFVSASAQSSGGVRGGAGADSSSNALTAEDLEAIRREVPSVA
                     MVSPQVNARAQMVAGNLNWSAQVQGVSHEFTDIRRWQVASGAFFTESDVRSAARVIVL
                     GQTVADNLFPGQGAVGQTVRVTNLPFRVVGVMARRGQDQMGRDQDDLALAPFTAVQKK
                     LLGNDRLNVALVSAVSQGATYTAQAQITELLRQRHKLTPSEPNDFTVRNMSDVAEAAN
                     ETNGTMTVLLGCIAGVSLLVGGIGIMNIMLVSVTERTREIGIRMAIGARSSAVRAPFL
                     IESVVLSLTGGAAGIVLGVGVSLGIPLLLGWPTLISTASVVGSVVFSAAVGIGFGYYP
                     ARKAAGLDPIDALRYE"
     gene            2087..2698
                     /locus_tag="VD968_12755"
     CDS             2087..2698
                     /locus_tag="VD968_12755"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HYE15309.1"
                     /translation="MTNTETLTIWPLGAADAGAAAEPRASTDVELARLAADGDASAFE
                     QLYVRHHRRVYSICLRMTQNPAEAEDLAQEVFVQLFRKVGMFRGDSAFTTWLHRMAVN
                     QVLMHFRKKSTRVEQTTEDGDVPVQVVAGSEDPGRMPVVDRVALDRALAKLPPGYRSV
                     FVLHDVEGYEHEEIGRLLGIAAGTSKSQLHKARMKLRSLLKHR"
     gene            complement(2787..>3494)
                     /locus_tag="VD968_12760"
     CDS             complement(2787..>3494)
                     /locus_tag="VD968_12760"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE15310.1"
                     /translation="SHVEISVSDDGAGIAPEFLPHVFDRFRQADGSTTRRHGGLGLGL
                     AIVRHLVELHGGAVSAESAGEGRGATFRVLLPTIAVYRSVGVEERVHPAAKDTLPSYE
                     CPERLDGLRVLVVDDEPDTRELLKVGLEQCGAAVTTAGSAAEALAAVKSGTPDLLISD
                     IGMPDEDGYELMRKVRALGAGAGGRVPAIALTAYARTEDRLQALRAGFQMHVPKPVEM
                     AELAAVAASLASRARDD"
BASE COUNT          563 a         1194 c         1212 g          525 t
ORIGIN      
        1 gttcgaggcg gggctgatag gccgcgccga ggccggggcg cggcccgtca tacagttcga
       61 aggggttaac aagacctaca cgatgggcga cgtagaggtt cacgccctgc gcggcgtctc
      121 gctgaccata cgcgagggcg agttcgtcgc cgtaatgggc gcgtccggct cgggcaagtc
      181 cacgatgatg aacatcatcg gctgcctcga ccgcccgacg cgcggccgct acgtcctcga
      241 cggcgcggac gtgtcaagcc tctcgaagga cgagcgcgcc gacatacgca acagcaagct
      301 cggcttcgtt ttccagggct tcaacctgct ttcgcgcacg tcggcgctgg agaacgtcga
      361 gctgccgatg ctctacgccg gggtgggcgc ggccgagcgc gaacggcgcg cgagggaggc
      421 gctgcattcg gtcgggctcg ccgggcgcga gcaaaaccac tcgaaccagc tctcgggcgg
      481 gcagcagcag agggtcgcaa tcgcgcgcgc cctcgtcaac aacccgaagc tcatcctcgc
      541 agacgagccc acgggcgcgc tcgactcgcg aacctcggtc gaggtcatgg agattttcca
      601 gcgcctaaac cgcgagcgcg ggataacgct cgtgctcgtc acgcacgagc aggacatagc
      661 cgagcacgcc gaccgcgtcg tcgtcttcaa ggacggccgc gtgcggaaag attatcgcgt
      721 tgacgcgccg cgcgacgcgg cccgcgagct ggcgggcctc ccgcccgcgg gctttgacga
      781 agaggactga ggggcaaacc ggccgcaccc gcgcggccgt aaattaccgg gcgacgtaaa
      841 tgaacgcaca ggggacactg cgaatagcct tccgggcgct ggcgcgaaac aagatgcgcg
      901 cggccctgac gatgcttggc gtcatcatcg gcgtctcggc cgtgatagcg atggtcagca
      961 tagggcaggg cgcgcaggcc gccgtgcagg cccagataga ggggatgggg acgaaccttc
     1021 tgttcgtctc ggccagcgcg cagagctcgg gcggcgtgcg cgggggggcg ggcgcggatt
     1081 cgtcctcgaa cgcgctgacg gccgaagacc tcgaagccat acggcgcgaa gtcccctcgg
     1141 tcgctatggt cagcccgcag gtcaacgcgc gcgcgcagat ggtcgccggc aacctcaact
     1201 ggagcgcgca ggtgcagggc gtgagccacg agttcacaga catacgcagg tggcaggtgg
     1261 cgagcggcgc tttcttcacg gagtcggacg tgcgctctgc cgcgcgcgtc atagtcctcg
     1321 gtcagacggt cgcggacaac ctctttccgg ggcagggcgc ggtcgggcag acggtgcgcg
     1381 tgacgaattt gccgttccga gtcgtgggcg tgatggcgcg cagggggcag gatcagatgg
     1441 ggcgcgacca ggacgacctg gcgctggcgc ccttcacggc cgtgcagaag aagctgctcg
     1501 ggaacgaccg cctgaacgtg gcgctcgtct ccgccgtctc tcagggtgcg acctacacgg
     1561 cgcaggcgca gataacggag ctgctccggc agcgccacaa gctcacgccc tcggagccga
     1621 acgacttcac cgtgcgcaac atgtcggacg tggccgaggc ggcgaacgag acgaacggca
     1681 cgatgacggt gctgctgggc tgcatcgcgg gcgtctcgct cctggtcggc ggcataggca
     1741 tcatgaacat catgctggtc tccgtcaccg agcgcacgcg cgagataggc atcaggatgg
     1801 cgataggcgc gcgctcgtcg gccgtgcgcg cgccgttttt aatcgagtca gtcgttctaa
     1861 gcctgacggg cggggccgcc ggcatcgtgc tcggcgtggg cgtgtcgctg gggatacctc
     1921 tcctgctcgg ctggccgacg ctcatctcga cggcctctgt ggtcggctcc gtggtcttct
     1981 cggcggccgt cggcataggc ttcggctact acccggcgcg caaggccgcc gggctcgacc
     2041 cgattgacgc cttgcgttac gaataagcgg ggggcaggga aagctgatga ctaacacgga
     2101 aactctcaca atctggccgc tcggggccgc cgacgcgggc gccgcggccg agccgcgcgc
     2161 ctcgacggac gtcgagctcg cgcgcctggc cgccgacggg gacgcctcgg ccttcgagca
     2221 gctctacgtg cgccaccacc ggcgcgtcta tagcatctgc ctgcgcatga cgcagaaccc
     2281 ggccgaggcc gaagacctcg cgcaggaggt cttcgtacag ctcttcagga aggtcggcat
     2341 gttccggggc gactcggcct tcacgacgtg gctgcaccgc atggccgtca accaggtcct
     2401 gatgcacttc cgcaagaaga gcacccgcgt cgagcagacg acggaggacg gcgacgttcc
     2461 cgtgcaggtc gtggccgggt cggaagaccc cgggcggatg cccgtcgttg accgcgtcgc
     2521 gctcgaccgg gcgctcgcga agctgccgcc cggctaccgc tccgtcttcg tcctgcacga
     2581 cgtcgaaggc tacgagcacg aggagatagg ccgcctgctc ggcatagcgg ccggcacatc
     2641 gaagtcgcag ctacacaagg cgaggatgaa gctgcgcagc ctgctcaagc atcgttaaga
     2701 gagattcatg gccgcaggcg cggagggggc gcagagagtt gaatcttctc tgcgccccct
     2761 ccgcgcctgc ggccatgagt agcgcgtcag tcgtcgcgtg cgcggctggc gaggctggcg
     2821 gcgacggccg ctagctcggc catctcgacc ggcttcggca cgtgcatttg gaagccggcg
     2881 cgcagggcct gcaacctgtc ctccgtgcgc gcgtaggccg tgagcgctat ggcaggcacc
     2941 cgcccgcccg cgcccgcccc caacgccctg accttccgca tcagctcgta cccgtcctcg
     3001 tccggcatcc ctatgtcgct tatgagcagg tcgggcgtcc ccgactttac ggccgcgagc
     3061 gcctcggccg ccgacccggc ggtcgtcacc gccgcgccgc actgttcgag gccgaccttg
     3121 agtagctcgc gcgtgtccgg ctcgtcgtcc acgacgagca cccgcaggcc gtcgagcctc
     3181 tccgggcact cgtaggaggg cagggtgtct tttgccgcgg gatgcacgcg ctcctccacg
     3241 ccgacactcc gatagacggc gatggtcgga agcagcaccc tgaaggtcgc gccccgcccc
     3301 tcgcccgcgc tctcggcgct tacggccccg ccgtgcagct cgaccaggtg cctcactatc
     3361 gccagcccca gccccagccc cccgtgcctc cgcgtcgtcg aaccgtccgc ctgccggaat
     3421 cggtcgaaga cgtggggcag gaactccggc gcgatgccgg ccccgtcgtc gctgacggag
     3481 atttcgacgt gcga
//
LOCUS       DASPKR010000477         5825 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1750252, whole genome shotgun sequence.
ACCESSION   DASPKR010000477 DASPKR010000000
VERSION     DASPKR010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5825)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5825
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1750252"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..929
                     /gene="queA"
                     /locus_tag="VD968_12765"
     CDS             <1..929
                     /gene="queA"
                     /locus_tag="VD968_12765"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: protein motif:HMM:NF001140.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HYE15311.1"
                     /translation="FPSEIDGGDCVVINNTRVFPARLLGRREPTGGRVELLLTREREG
                     SGGGRIWEALARPARSLRAGAVVVFGDGRLRAEVLGLTEDGHARVLRFEADGDFDSLV
                     EEFGLVPLPPYIRRDTEDLAARGEDRERYQTVYAGRRGAIAAPTAGLHFTPRVIEEVR
                     ARGAAVAEVTLHVGYGTFAPVRAEDLSEHRVAPERFEISGGAAEEINRARERGGRVVA
                     VGTTTVRALETAADERGRVLAGRGETGLTITPGYRFRAVGALLTNFHLPRSSLLVLVA
                     AFAGRDLTLAAYRHAVGAGYRFYSYGDCMLIK"
     gene            1008..1580
                     /locus_tag="VD968_12770"
     CDS             1008..1580
                     /locus_tag="VD968_12770"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HYE15312.1"
                     /translation="MAVLKKIRSRLFSSPEAGADGRGAAGDEFTRPGRAAHGRAPAYD
                     IRPLTVAQLDECWRLDQRCFVDGEAYSRETFEYLLGSPDSVSYRAVTPDGTMVGFIVG
                     IAEPDATGHVTTLGVAPEHRRRKIAQRMLAKVEEGFRRRHLRIARLEVRSVNTGAQEL
                     YAKLGYTVTQRLPRYYSNGGDGLLMVKPLN"
     gene            complement(1651..2235)
                     /locus_tag="VD968_12775"
     CDS             complement(1651..2235)
                     /locus_tag="VD968_12775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015347803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase domain-containing protein"
                     /protein_id="HYE15313.1"
                     /translation="MTFINYASREINCKIVYYGPGLCGKTTNLQYIYDTTSPTAKGKL
                     ISLATETDRTLFFDFMPLELGTVRGFKTRFHLYTVPGQVFYDASRKLILKGVDGVVFV
                     ADSQEERMDANIESLYNLEENLSANGYDLTKIPYVLQLNKRDLPNVLPVEEMVAELRR
                     KEEPVHEAVASNGAGVFDTLKSVAKQVLTELRKS"
     gene            complement(2299..2781)
                     /locus_tag="VD968_12780"
     CDS             complement(2299..2781)
                     /locus_tag="VD968_12780"
                     /inference="COORDINATES: protein motif:HMM:NF015232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HYE15314.1"
                     /translation="MTDAPIIMHEQQFQQLRLILNKLRLESFSRVVFLVDKNGQQIAV
                     QGDVGELDTTSLASLAAGNVAATGGMARLIGEREFPTLSHEGERESIHICIIGRVLLV
                     VVFDERSSLGLVKLRVKQASRDLSALFEELERLSRQMKDSEEALFSEITDDDIDSLFN
                     "
     gene            3306..4097
                     /locus_tag="VD968_12785"
     CDS             3306..4097
                     /locus_tag="VD968_12785"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15315.1"
                     /translation="MRKAAPSKASAGSKSQQRPPVKKAQRTAPAKKAAKKTAGKGRPA
                     PSKKAAPVKKSAGAAAKPRPKHAAAAPAKGKAAKQTPVAAHKAPARPAPPPPKQPSRD
                     EAAALKAFERAHKEFARGNFAAARESFRSLIEQHAGVSEVTARARTYLAITEARLRTE
                     AALPRDPDTLYDRGVIELNRGDFVAAQEMFERALKRDPSAADAHYALAATRARLGAVE
                     TALQALERAIELKPVLRVRAQSDSDFALLRNEPEFERIVYPGLRS"
     gene            4235..5269
                     /locus_tag="VD968_12790"
     CDS             4235..5269
                     /locus_tag="VD968_12790"
                     /inference="COORDINATES: protein motif:HMM:TIGR01826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconeogenesis factor YvcK family protein"
                     /protein_id="HYE15316.1"
                     /translation="MQAEQERGLNLVAIGGGTGLSTVLSGLKEMVGERGRGGPWLETL
                     SAIVTVSDDGGSSGRLRDELRMLPPGDIRNCMVALSEDSTLLSRLFKYRFRGDGGLGG
                     HSFGNLFLAALTEVTGDFVEAVRLSSEVLASKGRIYPATLNDVRLVAELEDGTEIRGE
                     TRITASRAGIRRLRLEPEHCLPLPEALAAIRSADVITVGPGSLYTSILPNLLVARVAD
                     AIGDSPAVKIFICNLMTQPGETDGYTARRHLEVVRSYAPEIRFDFVVANDRPVSPEQA
                     ARYAAEGAQQIGLTDHLLEEEFGGETEVVRADLLDEGEKVRHSPRKLARVIAACYEQA
                     RSRPALTATR"
     gene            5277..>5825
                     /locus_tag="VD968_12795"
     CDS             5277..>5825
                     /locus_tag="VD968_12795"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HYE15317.1"
                     /translation="MERQPTQNTPQPGAPPLDVLILAAGLGTRMRSATAKVLHKLGGR
                     PLIAHVCRAAVALQKEQRPVYVVVGHQAEEVERAVRDELGASGAAFITQVEQRGTGDA
                     VLAAREALAGSNSTLLVLSGDVPFVRAETLGALVHQHRTHRGRGAACTLLSVRLEDPT
                     GYGRVIRDADGRFERVVEQKDAT"
BASE COUNT          953 a         2019 c         1915 g          938 t
ORIGIN      
        1 agttcccttc cgaaattgat ggaggcgact gcgtcgtcat aaacaacacg cgcgtcttcc
       61 ccgcgcgcct gctcgggcgc cgcgagccga cgggcgggcg cgtcgagttg ttgctaacgc
      121 gcgagcgcga gggctctggc ggcgggcgca tctgggaggc gctcgcccgg cccgcacgga
      181 gcctgcgcgc gggcgccgtc gtcgtcttcg gcgacgggcg cctccgcgcc gaagtgctcg
      241 gcctgactga ggacggccac gcgcgcgtcc tccgcttcga ggccgacggc gacttcgact
      301 cgctcgtcga ggagtttggg ctcgtcccgc tcccgcctta catccgccgc gacacggaag
      361 acctcgccgc ccgcggcgaa gaccgcgagc gctaccagac cgtttacgca ggccgccgcg
      421 gcgccatcgc cgcgcccacc gccgggctgc acttcacccc ccgcgtcatc gaggaggttc
      481 gcgcgcgcgg cgccgcagtc gctgaagtga ctttgcacgt cggctacggc accttcgcgc
      541 ccgtccgcgc cgaagacctc tccgagcacc gcgtcgcgcc cgagcgcttc gagataagcg
      601 gcggggcggc cgaggagata aaccgcgcgc gcgagcgggg cggccgcgtc gtcgccgtcg
      661 gcacgacgac cgtccgcgcc ttagagaccg ccgcggacga gcggggccgc gtccttgcgg
      721 ggcgcggcga gacgggcctc acaatcacgc ccggctaccg cttccgcgcc gtcggcgccc
      781 tgctcacgaa cttccacctc ccgcgctcct cgctcctcgt cttggtcgcc gccttcgccg
      841 gccgcgacct caccctcgcc gcctaccgcc acgcagtcgg cgccggctac cgcttctaca
      901 gctacggcga ctgcatgctc atcaagtgac gagtgacaag cggcgggcga caggctaaaa
      961 ttcgtctcgg gctcgtctcc cgtcacacgt cactctttaa cgttcctatg gcagttctga
     1021 agaagattcg ctcacgtctg ttctcgtcgc ccgaggcggg ggccgacggc cgcggcgcgg
     1081 cgggtgacga gttcacccgg cccgggcggg cggcgcacgg gcgcgcgccg gcctacgaca
     1141 tacggccgct caccgtcgcg cagctcgacg agtgctggcg cctcgaccag cgctgcttcg
     1201 ttgacggcga ggcatacagc cgcgagacct tcgagtacct gctaggctcg cccgactccg
     1261 tctcctaccg cgccgtaacg cccgacggca cgatggtcgg cttcatcgtc ggcatagccg
     1321 agcccgacgc caccggccac gtaaccacgc tcggcgtcgc gcccgagcac cgccggcgca
     1381 agatagccca gcgcatgctc gcaaaagtgg aggagggctt ccgccggcgt cacctccgca
     1441 tcgcgcgcct cgaagtccgc tccgttaaca ccggcgcgca ggagctttac gccaagctcg
     1501 gctacaccgt cacgcagcgg ctcccgcgct attactcgaa cggcggcgac ggcctcctca
     1561 tggtcaagcc gctcaattag gggctagggg ctagttaaga ggtcatctct taactagccc
     1621 ctagctctag tctctagccc ctgtctttcc tcagctcttc cgaagctccg tcagcacctg
     1681 tttcgcgacc gacttgagcg tgtcgaagac gcccgcgccg ttcgaggcga cggcctcgtg
     1741 gactggctct tccttgcgcc gaagctccgc gaccatctcc tctacgggca aaacgttcgg
     1801 caggtctcgc ttgttgagtt gcaggacgta agggattttc gtcaggtcgt agccgttggc
     1861 cgagaggttc tcctcaaggt tgtagagcga ctcgatgttc gcgtccatgc gctcttcctg
     1921 cgagtctgcg acgaagacga cgccgtcaac acccttcagt atcagcttgc gcgaggcgtc
     1981 gtagaagacc tggcccggca cggtgtagag gtggaagcgc gtcttgaagc cgcggacggt
     2041 gcccagctcc agcggcatga agtcgaagaa gagcgtgcgg tccgtctctg tggcgaggct
     2101 tatgagcttg cccttcgccg tcggcgaggt cgtgtcgtag atgtattgca ggttagtcgt
     2161 cttgccgcac aggcccggcc cgtaatagac gatcttgcag tttatctctc tggaagcgta
     2221 gttgatgaag gtcatggcgt tcccgtgaca ggagttcggt ctgggagccg tgggcggccg
     2281 gctgtccgcc cagggggttt aattgaagag gctgtctatg tcgtcgtcgg tgatttcgga
     2341 gaagagggcc tcctcggaat ctttcatctg gcgcgagagc cgttccagtt cctcgaagag
     2401 ggcagagagg tcgcgcgacg cctgcttgac gcgcagcttc acgagcccga ggctcgagcg
     2461 ctcgtcgaag acgacgacga gcagcacccg gccgatgatg cagatgtgta tgctctcgcg
     2521 ctcgccctcg tgcgagagcg tcgggaactc gcgctcgcct atgagccgcg ccatgccgcc
     2581 cgtcgccgcg acgttccccg cggcgagcga cgccaagctc gtcgtgtcga gttcgcccac
     2641 gtcgccctgc acggctatct gctgcccgtt cttgtccacg agaaagacca cgcgggagaa
     2701 agattcgagg cgcagcttgt tcagtatcag ccttagctgc tgaaactgct gctcgtgcat
     2761 aatgattggt gcgtctgtca ttcgtacaca ggctctttct ctcgcagggt gcgaagcgga
     2821 ggtgagtttt ccaggggggc ttgcgcttgg ggctttcccg ctcgaagagc taagtagaag
     2881 aattaagaag gcttggcccg ccattagggg cgacggcggg aggcggccga ggccctcgtt
     2941 gccgagcctc accaccccgc aaaaactcta acacacggcc aaagatgact tcaatagttt
     3001 ttctgtgttg gcaatagttt tgagcttgag aaagtaggcg aagtggaggc cgcaaaccct
     3061 agttctacgt tgatttatgg ggcggctgta tgttaagctg ttgaaaggtc aaagcttccg
     3121 cgccgggagc tgtgggttga aaccgagagc ttcgcatgag cgatccggtc atcaagggtg
     3181 caaaaagagc tgcctcccgc ccagcaccgc aaagcgcttc gccaaagtct tcggcccgaa
     3241 gcggaaagtt aactgccaag cccgcaaaac ctaaaccgaa gcgtgcggcg gcggagaaag
     3301 cccccgtgcg taaagccgcg ccctcaaagg cttccgccgg ctcgaagtcg cagcagcgcc
     3361 cgcccgtcaa gaaggcccag cgcacggcgc ctgctaagaa ggccgcgaag aagacggccg
     3421 gcaagggccg gcccgcgccc tcgaagaagg ccgcgccggt gaaaaagtcg gccggcgcgg
     3481 cagcgaagcc gcggccgaag catgcggcgg ccgcccccgc gaagggcaag gccgcgaagc
     3541 agacgcccgt ggcggcgcac aaggccccgg cccggcccgc gcccccgccg ccgaagcagc
     3601 cttcgcgcga cgaggccgcg gccctgaagg ctttcgagcg cgcccacaag gagttcgcgc
     3661 ggggcaactt cgccgcggcg cgcgagtctt tccggtctct aatcgagcag cacgccggcg
     3721 tctccgaggt gacggcgcgc gcgcgcacct acctggccat cacggaggcc cgcctgcgaa
     3781 cggaggccgc gctcccgcgc gacccggaca cgctctacga ccgcggcgtc atcgagctga
     3841 accgcggcga cttcgttgcg gcgcaggaga tgttcgagcg cgccttaaag cgcgacccgt
     3901 cggccgcgga cgcgcactac gcgctcgcgg ccacgcgagc tcgcctcggc gccgtcgaga
     3961 ccgcgctcca ggctctcgag cgcgccatag aactcaagcc ggtgctgcgc gtgcgcgcgc
     4021 agtcggattc ggacttcgcc ctcctgcgca acgagccgga gttcgagcgc atcgtctatc
     4081 ccggcctgcg ctcctgaacg gtcacgcccc ttcggcggcc cgcccccccc cggccgcctc
     4141 cgacctcact gcttttaaag cccatgcctt tcgagtatga ttttgacgcc ggcgcccgtg
     4201 cgcctttccc ttttcgccga ggagactgga cgagttgcaa gctgaacagg aacgcggcct
     4261 aaacctcgtc gccatcggcg gcggcacggg cctctcgacc gtcctttcgg gcctgaagga
     4321 gatggtgggc gagcgcgggc gcggcggccc gtggctcgag acgctgtcgg ccatcgtcac
     4381 cgtctcggac gacggcggaa gctcgggccg gctgcgcgac gagttgcgga tgctcccgcc
     4441 gggcgacata cgcaactgca tggtcgccct ctccgaagac tcgacgctgc tctcccgcct
     4501 attcaagtac cgtttccgcg gcgacggcgg gctcgggggc cacagcttcg gcaacctctt
     4561 cctcgcggca ctgacggaag tgacgggaga cttcgtcgag gccgtcaggc tctcctcaga
     4621 ggtgctcgcc agcaaggggc gcatataccc ggcgactcta aacgacgtgc ggctggtggc
     4681 cgagctagag gacggcactg agataagggg cgagacgcgc attacggcct cgcgcgcggg
     4741 gattcgtcgg ctgcggctgg agccggagca ctgcctgccg ctcccggagg cgctcgcggc
     4801 catacgctcg gccgacgtga taaccgtagg ccccggctcg ctctacacga gcatattgcc
     4861 gaaccttctg gtcgcccgcg tcgccgatgc gataggcgac tcgcccgccg tcaaaatctt
     4921 catctgcaac ctcatgacgc agcccggcga gaccgacggt tacacggcgc gcaggcacct
     4981 cgaggtcgtg cgctcttacg cgcctgagat aaggttcgac ttcgtcgtgg cgaacgaccg
     5041 gcccgtgagc cccgagcagg ccgcccgcta cgcggccgag ggcgcgcagc agatcggcct
     5101 tacagaccac ctgttagaag aggagtttgg cggtgagacc gaggtggtgc gcgccgacct
     5161 gctcgacgag ggcgagaagg ttcgccacag cccccgcaag ctcgcgaggg tcatcgccgc
     5221 ctgctacgag caggcgcgct cgcgccccgc actgaccgcg acgcgctgaa gagggtatgg
     5281 agagacagcc gacacagaac acgccgcagc ccggcgcccc cccgctcgac gtgctcatac
     5341 tcgccgccgg cttggggacg cgcatgcgct cggccaccgc taaggtgctg cacaagctgg
     5401 gcgggcgccc gctcatcgcg cacgtctgcc gcgcggccgt cgcgctacag aaggagcagc
     5461 ggcccgtcta tgtcgtcgtg gggcatcagg cggaggaggt cgagcgggcg gtgcgcgacg
     5521 agctgggcgc gtcgggcgcg gccttcatca cacaggtcga gcagcgcggc acgggcgacg
     5581 ccgtgctcgc cgcgcgagag gcgctcgccg gctctaactc gacgctactc gtgctctcgg
     5641 gcgacgtgcc gttcgtgcgc gcggaaaccc tgggagcctt agttcaccag caccgcacgc
     5701 accgcggccg cggcgccgcg tgcacgctcc tctccgtgcg cctcgaagac ccgaccggct
     5761 acgggcgcgt catacgcgac gccgacgggc gcttcgagcg cgtcgtcgag cagaaggacg
     5821 ccaca
//
LOCUS       DASPKR010000478         3191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1236463, whole genome shotgun sequence.
ACCESSION   DASPKR010000478 DASPKR010000000
VERSION     DASPKR010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3191)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1236463"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..914)
                     /locus_tag="VD968_12800"
     CDS             complement(<1..914)
                     /locus_tag="VD968_12800"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HYE15318.1"
                     /translation="MRFKNFSARALALFFAAAAFTFFSAAPARAQEEGVAAVLDEPVV
                     QVNNDVIMLSQLRRENREFKDTLVNQRRLKPDEADAQVAQKQPEIIFNLINEALLLQK
                     GKDIPRLTEEVEVEVNREVLRVMKESNLTSIEQLEAAMRAEGISLSEVRETIRRQYTR
                     QAVLSREVDYKIYYGLTDAELRKYYDANRARFASVTMSEIFLSLAGRTDAEVAAKAKQ
                     LVAQARGGADFGELAAKNSEREQTAGTKGLLADKDGKARWFLLAELNPSVSAAVKDLK
                     AGGVSEPIKLDEGYLILRVNERDDAYKE"
     gene            complement(997..>3191)
                     /gene="mfd"
                     /locus_tag="VD968_12805"
     CDS             complement(997..>3191)
                     /gene="mfd"
                     /locus_tag="VD968_12805"
                     /inference="COORDINATES: protein motif:HMM:TIGR00580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HYE15319.1"
                     /translation="FPAVVTVGRLSGGFELPGARLVVHGETDLFDEASGESLERRVPG
                     TSHATTGSARRKKSKTAAFLSDFRDLKVNDYVVHIDHGVARFGGLQTLELGGRRGEFM
                     LLFYADEAKLYVPVERLDLVQRYSSAEGHEPALDRLGGLGWHKTKARAKRAMRDMADE
                     LLKLYAERKLVQGYAFAADSPWQREFEDAFEYVPTPDQETAIEDVKRDMEQTTPMDRL
                     LCGDVGYGKTEIAMRAAFKAVMGSKQVAVLAPTTVLAYQHYETFRSRFAAFPVQIELI
                     SRFRSPKEQKAIVKRVESGEIDIIIGTHRLLSKDISFRDLGLVVVDEEQRFGVAHKER
                     LKQLKKRVDVLTLSATPIPRTLNMSLMGLRDMSVIETPPRDRLAIQTQVVQFSEPVIK
                     SAIELELGRGGQVFFIHNRVETIDTVAALVKRLVPRARVTVAHGQMNEKEMEAVMLDF
                     VAYKADVLVATTIIENGIDIPRANTIIINRADNYGLSQLYQLRGRVGRSNRRAYAYLL
                     IPSEAELTAIARRRLAAIREFSDLGAGFRVAALDLELRGAGNLLGGEQSGHMDALGFD
                     LYTQMLERTVAELRGEAVEDEASVSINLGVDVSIPEDYVSDMGQRPRTYKRIASARDD
                     ETLGQIRRETEDRYGRPPESVERLFAYARLRRLAEETGAVSIDRTPAGLAVKLKETAR
                     VSPDKLLALVGAGGASFSASGVLRIEAGEAADLIGRAHGVLLEIRAEG"
BASE COUNT          482 a         1061 c         1073 g          575 t
ORIGIN      
        1 ttctccttgt aggcgtcgtc gcgctcgttg acgcgcaaga tcaggtagcc ctcgtccagc
       61 ttaatcggct cggagacgcc gccggccttg aggtctttga cggccgcgct gaccgagggg
      121 tttagctcgg cgagcaggaa ccatcgggcc ttgccgtcct tgtcggcgag gagccccttc
      181 gtgcccgcgg tctgctcgcg ctcggagttc ttggcggcta gctcgccgaa gtcggcgccg
      241 ccgcgcgcct gcgcgaccag ttgcttagcc ttcgccgcga cctcggcgtc ggtgcgcccg
      301 gcgaggctca ggaatatctc ggacatcgtg acgctggcga agcgcgcgcg gttggcgtcg
      361 tagtacttgc ggagctcggc gtccgtgagg ccgtagtaaa tcttgtagtc aacctcgcgc
      421 gagagcacgg cctggcgcgt gtactggcgg cgtatggtct cgcgcacctc ggagagcgag
      481 atgccctcgg cgcgcatggc ggcctcgagc tgctcgatgc tcgtcaggtt cgattccttc
      541 atcacgcgaa ggacttcgcg gttgacctcg acctcgacct cctcggtcag gcgcgggatg
      601 tccttgccct tctgaaggag gagcgcctcg ttgatgaggt tgaagataat ctcgggctgc
      661 ttctgcgcga cctgcgcgtc ggcctcatcg ggcttgagcc gccgctggtt gacgagcgtg
      721 tccttgaact cccggttctc gcgcctgagc tgcgagagca ttatcacgtc gttgttgacc
      781 tgcacaaccg gctcgtcgag cacggcggcg acgccctcct cctgcgcccg cgcgggcgcc
      841 gcagagaaga atgtgaaggc cgcggccgcg aagaagagcg cgagggcgcg ggccgaaaag
      901 tttttaaatc gcacgttttt caactcctga aaactcaagg ccggagcgcg gcccatgcac
      961 gggcggggcg cggtcgcccc acgcaaagcg cacattctaa ccttcggccc ggatttcgag
     1021 caacacgccg tgggcgcgcc cgatgaggtc tgccgcctcg cccgcttcaa tcctgagcac
     1081 gccgctcgcg ctgaacgacg ccccgccggc cccgaccagc gccagcagct tgtcgggcga
     1141 gacgcgcgca gtctccttga gcttgacggc cagccccgcg ggcgtgcggt caatcgagac
     1201 ggcgcccgtc tcctcggcca gccggcgcag ccgcgcgtat gcgaaaaggc gctcgaccga
     1261 ctcgggcggg cgcccgtagc ggtcttccgt ctcgcgccga atctgcccta gcgtctcgtc
     1321 gtcgcgggcc gacgcgatgc gcttgtaagt gcgggggcgc tgccccatgt ccgagacgta
     1381 gtcctctggg atggacacgt caacgcccag gtttatcgag accgaggcct cgtcctcgac
     1441 tgcctcgccg cgaagctcgg ccacggtgcg ctctaacatc tgcgtgtaaa gatcgaagcc
     1501 gagcgcgtcc atgtggcccg actgctcgcc gccgagcagg ttccccgccc cgcgaagctc
     1561 aaggtctaag gccgcgacgc ggaagccggc gccgaggtca gagaactcgc gtatggccgc
     1621 gagccggcgg cgggctattg cggtcagctc cgcctccgag ggtatgagca ggtacgcgta
     1681 ggcgcggcgg ttcgagcgcc cgacgcggcc gcggagctgg taaagctgcg aaaggccgta
     1741 gttatccgca cggtttatga tgatcgtgtt ggcgcgcggg atgtctatgc cgttctcgat
     1801 gatggtcgtc gccacgagca cgtcggcctt gtaggcgacg aagtcgagca tgacggcctc
     1861 catctccttc tcgttcatct gcccgtgcgc gaccgtgacg cgggcgcgcg gcacgagccg
     1921 cttgacgagg gcggcgacgg tgtcaatcgt ctcgacgcgg ttgtgtatga agaagacctg
     1981 gccgccgcgg cccagctcca gctctatggc ggacttgatg acgggctcgg agaactgcac
     2041 gacctgcgtc tgaatcgcca gccggtctcg cggcggcgtc tctatgacgc tcatgtctcg
     2101 caggcccatc aaagacatgt tgagcgtgcg cgggatgggc gtggccgaga gcgtgaggac
     2161 gtcaacgcgc tttttcaact gcttgaggcg ctccttgtgc gcgacgccga agcgctgctc
     2221 ctcgtccacg accacgaggc cgaggtcgcg gaaacttatg tccttcgaga gcagccggtg
     2281 cgtgccgatg attatgtcta tctcgccaga ctcgacgcgc ttcacaatcg ccttctgctc
     2341 cttcggcgag cggaagcgcg agattaattc tatctgcacg gggaaggccg cgaagcgcga
     2401 gcggaaggtc tcgtagtgct ggtaggcgag caccgtggtc ggcgcgagca cggccacctg
     2461 cttcgagccc atcacggcct tgaacgccgc gcgcatggct atctcggtct tcccgtagcc
     2521 cacgtcgccg cacagcagcc tgtccatcgg cgtggtctgc tccatgtcgc gcttcacgtc
     2581 ctcgatggcg gtctcttggt cgggggtggg gacgtactcg aaggcgtcct cgaactctct
     2641 ctgccacggg ctgtcggccg cgaaggcgta gccctgcacc agcttcctct cggcgtagag
     2701 cttcagaagc tcgtcggcca tgtcgcgcat cgcgcgcttg gcccgcgcct tcgtcttgtg
     2761 ccagccgagg ccgccgagcc ggtcgagcgc cggctcgtgc ccctcggcgc tcgagtagcg
     2821 ctggaccagg tcgagccgct cgaccgggac gtagagcttg gcctcgtcgg cgtagaagag
     2881 gagcatgaac tcccctctgc ggccgccgag ttcgagcgtc tgcaacccgc cgaagcgggc
     2941 cacgccgtgg tctatgtgga cgacgtaatc gttaaccttc aggtcgcgga agtcggagag
     3001 gaaggcggcc gtcttcgact tcttgcgccg ggccgagccg gtcgtcgcgt gcgacgtgcc
     3061 ggggacgcgc cgctccagac tctcgccgct cgcctcgtcg aacaaatcgg tctcgccgtg
     3121 gacgacgagg cgcgcgcccg gcagctcgaa gccgcccgag agccgcccga cggtgacgac
     3181 ggccgggaac t
//
LOCUS       DASPKR010000479         4670 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_588472, whole genome shotgun sequence.
ACCESSION   DASPKR010000479 DASPKR010000000
VERSION     DASPKR010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4670)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4670
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_588472"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1556)
                     /locus_tag="VD968_12810"
     CDS             complement(<1..1556)
                     /locus_tag="VD968_12810"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HYE15320.1"
                     /translation="MNLSFAIPAVSPDVNFQMLLPELILSVAGVVVMLIDAFTRRQAQ
                     RWVTGSVSLAGLAAAAWSCVWLWDEAKTGGAAFNGMLVLDSMRLSFTLVFLVVAALTV
                     LVSMIWVEWEGLPAGEFHTLLLFATVGMMLMASGGDLVMIFLGLEILSIATYVMAGFR
                     KDDLRSNESSLKYFILGSFSSAFLLFGMALTYGATAKFIPGGAGGGQAGVLPGTTNIM
                     EIAERVNDGVSAPLLFAGAAMMMIGFGFKIATAPFHVWTPDVYEGAPTPVTAFMAAGP
                     KAAGFAAFMRVFLFAFPFVAATAGQPLGTDARLHQAWIYALWVLAALTMTVGNVVALV
                     QNNVKRMLAYSSIAHAGYALVGFVAAGAAADASRRASAIGAVIFYLLVYAVMNLGAFA
                     VVTLVARGGDRRTDVEDYRGIGFKSPALSLTLSFFLLSLLGVPLTAGFMGKVVVFGEA
                     LGQQFYALVVIGVLNTAVSVYYYLRLIVVMFFRERTTQWHPPVVPASMALVLILTVAG
                     VLFLGLFPGSV"
     gene            complement(1585..2187)
                     /locus_tag="VD968_12815"
     CDS             complement(1585..2187)
                     /locus_tag="VD968_12815"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HYE15321.1"
                     /translation="MRFPAAAFVLAACLLASAQTGAPPQKPEAAVRPGDEPAATAKPV
                     SFRLKGIDGKIYDSTAMTGEVLVVSFGATWCVPCVWELVAIEELKEEYAHKPVRFLWV
                     SIEDAERTSDNILRHYARERGLTIPVLRDPTLAAYSQFSTTTRIPLVAFFDREGRFNA
                     PAHRGMPQDLTLYKKLVRDRVNALLEAKAVGAAPAAAAER"
     gene            complement(2184..3752)
                     /locus_tag="VD968_12820"
     CDS             complement(2184..3752)
                     /locus_tag="VD968_12820"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HYE15322.1"
                     /translation="MGQYLLTALILLPVVGALAVALHGLAPYAQARHYRLIALGFSLA
                     TFVLSLLLLGAPVGAGTTNAFHFVQDVPWIGSINARYHVGVDGMSLWLVLLTTLLVPI
                     SILSSWTSVEKRELAFYAFMLLLESAMIGVFVSLDLLLFFLFFEASLVPMFFLIGAWG
                     GERRLYAAIKFYIYTALGSLLMLAGIITLWYAFGTFDYVRIFDALQSEPGRLSATAGF
                     WLFLAFALAFSIKVPLFPLHTWLPDAHTEAPTAGSVILAGVLLKMGTYGLLRFNFALF
                     PEATRDFAPFFIVLAIIGIIYGALVAMVQPDVKRLVAYSSVSHMGFVVLGMFSFTEWG
                     MQGALYQMLNHGVSTGALFLLVGMIYERRHTRQIADFGGLSKPMPLFATFFVFTSLSS
                     VGLPLLNGFVGEFLIMLGMWNSPANLTVGRPWVATMIAATGVIWAAVYMLWMLQRVLF
                     GRVTRPENRRLADLNWREIGLMLPLLALMLYMGVYPRPFLERSRLSVEQVRSRVVATE
                     SQGTFSAGTHAEVK"
     gene            complement(3756..>4670)
                     /locus_tag="VD968_12825"
     CDS             complement(3756..>4670)
                     /locus_tag="VD968_12825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15323.1"
                     /translation="LRALARRADEEEHGRGSHAARLASEGDRPHHRPGESVDSHGHAG
                     AHAHGGAADDVFDDDEEHEEQHHHGPVEPHESPLVMTVPLVILAVLSTFGGLLGVPYA
                     LSGGAIPNYFEHTLEPAVAHVPAYGAESHGAAGATGHGAPAEGEGSTPQAVGEGTSGA
                     GYGAQTAAADEHAHDPTEVTVERIFTAVSVLIAAIGIGAGWGWFKRRPLYQMPRLLEE
                     KYYVDEAYDAAVITPTRRFSREGLWKFFDVTVIDGIVNGLGRGTTQVGALLRYMQPGF
                     VRSYAAIILLGALAVVGFFAYNAYQLLR"
BASE COUNT          886 a         1521 c         1605 g          658 t
ORIGIN      
        1 acgcttccgg ggaacagccc gaggaacagc acgcctgcca cggtcagtat cagcacgagc
       61 gccatgctcg cgggcaccac cggcgggtgc cactgtgtcg tgcgctcccg gaagaacatc
      121 acgactatca gccgcaggta ataatatacc gaaaccgccg tgtttagcac accgatgacg
      181 acgagcgcgt agaactgctg tcccagggcc tcgccgaaga cgacgacctt gcccatgaag
      241 ccggccgtca gtggcacgcc caagaggctc agcaggaaga aggagagcgt gagcgagagc
      301 gcgggggact tgaaccctat gccgcggtag tcctccacgt ccgtgcggcg gtcgccgccg
      361 cgagcgacga gcgtgacgac ggcgaaggcg ccgaggttca tcacggcata gacgagcagg
      421 tagaagatga ctgcgccgat ggcgctcgcg cggcgcgacg cgtcggcggc cgcgcccgcg
      481 gcgacgaacc cgacgagcgc gtagcccgcg tgcgcaatcg aggagtacgc gagcatgcgc
      541 tttacgttgt tctgcacgag cgccacgacg ttaccgaccg tcatcgtgag cgccgccagt
      601 acccagaggg cgtaaatcca tgcctggtgg agccgcgcgt ccgtccccaa aggctggccg
      661 gccgtggctg cgacgaaggg gaaggcgaac aggaagacgc gcatgaaggc ggcgaatccc
      721 gcggccttcg ggcccgcggc catgaatgcc gtgacgggcg tcggcgcgcc ctcgtaaacg
      781 tcgggcgtcc agacgtggaa gggcgccgta gctatcttga agccgaagcc aatcatcatc
      841 atcgccgccc cggcgaagag cagcggcgcg gagacgccgt cgttcacccg ctcggcgatc
      901 tccattatgt tggtcgtgcc gggcagcacg cccgcctgcc cgcccccggc gccgccgggt
      961 atgaacttcg cggtcgcccc gtaggtgagc gccatgccga agagcaggaa ggccgaggag
     1021 aacgagccga gtatgaagta ttttaaagac gactcgttcg agcgcaggtc gtccttgcgg
     1081 aagcccgcca tgacgtaggt cgctatcgag aggatttcca ggccgaggaa gatcatcacg
     1141 aggtcgccgc ccgaggccat cagcatcatg ccgacggtcg cgaagagcag tagcgtgtgg
     1201 aactcgcccg cgggcaggcc ctcccactcg acccatatca tcgagacgag caccgtcaag
     1261 gccgcgacca ccaggaagac gagcgtgaag gagagccgca tcgaatccag caccagcatg
     1321 ccgttgaatg cggcgccccc ggtcttggcc tcgtcccaga gccacacgca cgaccacgcc
     1381 gctgccgcca gccccgccag cgacactgag cccgtcaccc agcgctgcgc ctgccgccgc
     1441 gtgaaggcgt caatgagcat gacgacgacg cccgccaccg agaggatcag ctccggcagg
     1501 agcatttgga aattcacgtc cggcgagacg gccgggattg cgaaactcag gttcatggtc
     1561 tgtaggcccg gggccggccc gcctttacct ctcggcggcc gccgccggcg ccgcgcccac
     1621 ggccttcgcc tcgagcaggg cgttgacgcg gtcgcggacg agcttcttgt aaagggtcaa
     1681 gtcctgcggc atgccgcggt gcgcgggagc gttgaagcgc ccctcgcggt cgaagaaggc
     1741 gacgagcggg atgcgcgtcg tcgtcgagaa ctgcgagtag gccgcgagcg tcgggtcgcg
     1801 caggacgggt atcgtcaggc cccgctccct cgcgtagtgg cgcagtatgt tgtcggacgt
     1861 gcgctcggcg tcctcgatgc tcacccacag gaagcgcacg ggcttgtgcg cgtactcctc
     1921 cttcagctcc tcaattgcga ccagctccca gacgcacggc acacaccacg tagcgccgaa
     1981 ggagacgacg agcacctcgc ccgtcatcgc agtggaatcg taaatcttcc cgtcaatacc
     2041 cttgagccgg aaagacacgg gcttcgccgt cgccgcgggc tcgtcgcccg gtctgacggc
     2101 cgcctccggc ttctgcgggg gggcgccggt ctgcgcggag gcgagcaggc aggctgcgag
     2161 cacgaatgcg gcggctggaa atctcatttg acctccgcgt gcgtgccggc ggagaaagtc
     2221 ccctgcgact cggtggcgac gacgcgcgag cgcacctgct cgacgctcag gcgcgagcgt
     2281 tccaggaacg gccgcggata gacgcccatg tacagcatca gggcgagcag cggaagcatc
     2341 aggccgatct cgcgccagtt gaggtctgcg agcctgcggt tctcggggcg cgtcacgcgc
     2401 ccgaacagca cgcgctgcag catccaaagc atatagactg ccgcccagat cacgcccgtc
     2461 gcagcgatca tcgtcgccac ccacggccgc ccgacggtca ggttcgcggg cgagttccac
     2521 atgccgagca tgattaggaa ctcgccgacg aagccgttaa ggagcggcag gcccaccgaa
     2581 gagagcgacg tgaagacgaa gaaggtcgcg aacagaggca taggcttcga gagcccgccg
     2641 aagtccgcga tctgccgcgt gtgcctgcgc tcgtaaatca tgccgacgag gaggaagagc
     2701 gccccggtcg agacgccgtg gttgagcatc tggtagagcg cgccctgcat gccccactca
     2761 gtgaaagaga acatgccgag cacgacgaag cccatgtggc tcacggacga gtaggcgacc
     2821 aggcgcttca cgtccggctg caccatcgcg acgagcgcgc cgtagatgat gccgattatc
     2881 gccagcacga tgaagaaggg cgcgaagtcg cgcgtggcct cggggaagag cgcgaagttg
     2941 aagcgcagaa ggccgtaagt ccccatcttg agcagcactc ccgccaggat gacggagccc
     3001 gccgtcggcg cctcggtgtg cgcgtccggg agccacgtgt gcagggggaa gagcggcacc
     3061 ttgatgctga aggccagcgc gaacgcgagg aagagccaga agccggctgt cgccgagagt
     3121 cggccgggct cgctctgaag ggcgtcgaat atcctcacgt agtcgaacgt gccgaaggcg
     3181 taccagagcg tgataatgcc ggcgagcatg aggaggctgc cgagcgccgt gtagatgtag
     3241 aacttgatcg cggcgtaaag cctccgctcg ccgccccacg cgccgatgag gaagaacatc
     3301 ggcacgagcg acgcctcgaa gaagaggaag aacaggagta ggtcgagcga gacgaagacg
     3361 ccaatcatcg ccgactctaa gagcagcatg aaggcgtaga aggccagctc ccgcttctct
     3421 accgaagtcc agctcgaaag tatcgagatg gggacgagca gcgtcgtcag gagcaccagc
     3481 cagaggctca tgccgtcaac gccgacgtga tagcgcgcgt ttatcgagcc tatccacggc
     3541 acgtcctgga cgaagtggaa ggcgttcgtc gtgccggcgc ccacgggcgc gccgagcaga
     3601 aggagcgaga gcacgaaggt cgcgagcgag aagcccagcg cgatcaggcg gtagtggcgc
     3661 gcctgcgcgt agggcgcgag gccgtgcagc gcgaccgcga gcgcgccgac tacggggagc
     3721 aggatgagtg cggtcagaag gtattggccc attggctacc tcagaagctg gtaggcgttg
     3781 taggcgaaga agcccacgac ggcgagcgcg cccaaaagga ttatcgccgc gtagctccgc
     3841 acgaagccgg gttgcatgta tcgcaaaagc gcgcccacct gcgtcgtccc ccggcccaag
     3901 ccgttcacaa tgccgtcaat caccgtcacg tcgaagaact tccagaggcc ctcgcgcgag
     3961 aacctgcgcg tcggcgtgat gacggcggcg tcgtaagcct cgtccacgta atacttctct
     4021 tcgaggagcc gcggcatctg gtatagcggc cgtcgcttga accagcccca gccggcgccg
     4081 atgccgatgg ccgcgatgag gactgagacg gcggtgaaaa tccgctccac tgtcacctcc
     4141 gtcgggtcgt gcgcgtgctc gtcggctgcc gccgtctgcg ccccgtaccc cgcgccggac
     4201 gtgccttcgc cgacggcctg aggcgttgag ccttcgccct ccgcaggcgc gccgtgtccc
     4261 gtcgcgcctg ccgcgccgtg cgactcggcg ccgtatgcgg ggacgtgcgc gacggcgggc
     4321 tcgagcgtgt gctcgaagta gttcggtatc gcgccgccgc tcagggcgta ggggacgccg
     4381 aggaggccgc cgaaggtcga gagcacggcg agtatgacga gcgggactgt catcacgagc
     4441 ggcgactcgt gcggctcgac ggggccgtgg tggtgttgct cttcgtgctc ctcgtcgtcg
     4501 tcgaaaacgt cgtcggccgc gccgccgtga gcgtgcgcgc ccgcgtggcc gtggctgtca
     4561 accgactcgc cgggccggtg gtgcgggcgg tcgccttctg aggccaggcg ggcggcgtga
     4621 cttccgcggc cgtgctcctc ttcatcggcg cgacgggcaa gagcgcgcag
//
LOCUS       DASPKR010000480         6945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_714313, whole genome shotgun sequence.
ACCESSION   DASPKR010000480 DASPKR010000000
VERSION     DASPKR010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6945)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6945
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_714313"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..523
                     /locus_tag="VD968_12830"
     CDS             <1..523
                     /locus_tag="VD968_12830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15324.1"
                     /translation="LMSDGILMSDGVILSNTDGWQQYQVFLSKAMLMSDGVVLGDGVV
                     LGDGVVLGDGVVLGDGILMSDGILMSDGVIISNTDGWQRDHVFLSKAMLMGDGVVLGD
                     GVVLGDGVVLGDGGVMSTSSLATDAATQSQSVLANGDNTDCMPAILTKTTTTTTTTTT
                     TTTTTTTTTTKKK"
     gene            564..1475
                     /locus_tag="VD968_12835"
     CDS             564..1475
                     /locus_tag="VD968_12835"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE15325.1"
                     /translation="MTTTRQPSSSAGPDGRGAPSVGRAGELSTHLLTAGAEPEVASFL
                     AERPVHTVFMASLLRDNGLESPLNRGSFYACRDGRSHLEGVALIGHATLIEARSEAAL
                     AAFARVAQECSLAHLVRGEQEKVEYFWSRYSESGATPRLVCRELLLEQRVPPLLRRYI
                     RGLRLATPSDTNQIMEVNAAMAFEESGVNPMERDPEGFRRRTARRIEQGRYWVWTRRG
                     RLVFKADVIAETPEAAYLEGIYVSPEERGKGYGLSCLSQVGQALLARTGAVCLTVNEQ
                     VRNTLSFYAKAGYRLSSYYDTIYLQGS"
     gene            1491..1787
                     /locus_tag="VD968_12840"
     CDS             1491..1787
                     /locus_tag="VD968_12840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15326.1"
                     /translation="MSATPTAAGRQRHFDLYRWAVVLLGAAAFAYSASVIPAGAIDLR
                     FLLLAVLTVAASARLSVQIPRFDTNLTVSDTFIFLALLLYGGGPAVLLASAEGV"
     gene            1848..3710
                     /locus_tag="VD968_12845"
     CDS             1848..3710
                     /locus_tag="VD968_12845"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HYE15327.1"
                     /translation="MACSTFATAAALRLIFGDISAIEHGLTTTLAAAVGAVALVQYAV
                     NTGLVAAGLAIKTASPLWQTWSRHYLWSSITYLAGAAAAGVVVMFDGTVGLYALAVAV
                     PVIFVVYLTYSRYLEDIKATAAQAERAERERAEQAERHITELERANRALEESREHFRH
                     AAYHDALTGLPNRLLLADHLRLAIERAKRHPGHSFALIFLDLDRFKYINDSLGHAAGD
                     QLLVTVGRRLGNHLRPTDTVARLGGDEFAVLLDGLEDEGDAIRVAERIQQELTTPFNL
                     GGHEVFTTASVGITFSSPGYENPENVLRDADTAMYRAKENGKARYELFDAVMHARAVE
                     RLRLENDLRRAVERGEFSVYYQPIVSLDSDRVTGFEALVRWEHPERGFVPPTEFIPVA
                     EETGLIVEVGQWVLRESCRQMREWQRLSFDNRLLTISVNLSGKQFLQPNLIGCVKQIL
                     HETDLDPRCLKLEITESVMMESAEAASAMLVQLRHLGVQLSIDDFGTGYSSLSYLHRF
                     PINTLKIDRSFVTRMGDAGENSEIIRTILTLASNLGMDVIAEGVESKGQLAQLKAMGC
                     HYGQGYLFSKPVGAAGAGALIGAGTPARAKQDSPPEPSPLKSEDVEQFSSAFVM"
     gene            complement(3797..4534)
                     /locus_tag="VD968_12850"
     CDS             complement(3797..4534)
                     /locus_tag="VD968_12850"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HYE15328.1"
                     /translation="MSDSERPKSLDESVEAAMLDAELFIKYKAPQRAIERLQEAVAHH
                     PRSVVLREKLREVAVSHRQTDEAARQCLTLANLYIARENFEAAVERLLEAKHIDPRIN
                     IAPGLDAIRRARRPDLHQHAPSQPAARPEPERKPVTFAGDISTVSVFDAMQVIENSRL
                     TGALSVESPDRHGRVLFNEGRIVGAECGEARGHTAFRLIVELTAGSFDFEKSAEEFAV
                     TIQALSNTNLILDTLRQLDEEKQGGVE"
     gene            4885..5568
                     /locus_tag="VD968_12855"
     CDS             4885..5568
                     /locus_tag="VD968_12855"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HD-GYP domain-containing protein"
                     /protein_id="HYE15329.1"
                     /translation="MQEELTMSSLGAATVRLVDASWGAYLQRAFASLKAAGERRRTDG
                     VHALVGRLRRTRPSTYEHCVRVARYSRMAGRALGMEEARLRQLSSTAMMHDIGKILVP
                     ESILSRPRRPTRAERFILHLHPNLGALLASYFGLPAELRIRTQHHHERWDGRGYPHRL
                     GGEEIPFMARIVQVADTYDAMVAQRAYNSPRTHEEAVAELRRESGTQFDPLMVEAFLD
                     SFPERSGAA"
     gene            complement(5718..6749)
                     /locus_tag="VD968_12860"
     CDS             complement(5718..6749)
                     /locus_tag="VD968_12860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15330.1"
                     /translation="MRDFAEYLLSRDFPNFRDASGARPVYDAVAAGELVRFRLSPTSA
                     NADAITRVMEFGVPITVFNLDSVGSTTALEAALAALQPLRPDPSRGQVEQLVSAGNSF
                     YHGLTVEARRREARAPAGFRASLRAAYTLSRLVDDGVVNTSSAVRAGDFRSERARSLL
                     DRRHRLVVSGTFDAPPALYSLRLGFVLRAASGAPFNVSTGGADRNLDDVSNDRPSFRG
                     DPRLIRWRRPGEPLDARLLESFRLPLIGQAGDLPRNAGIGPALFDLDASLAREFRINE
                     RLRLRPVVEVDNLLNKTVFTFGAEFINFSALRPAATDEQRRAFAETFLVPARTMRPRT
                     VRVGLRVDF"
BASE COUNT         1138 a         2360 c         2360 g         1087 t
ORIGIN      
        1 cttgatgagc gacggtatcc tgatgagcga cggcgtcatc cttagcaaca ccgacgggtg
       61 gcagcaatat caggtattcc tctccaaggc catgctcatg agcgacgggg tcgtgctcgg
      121 cgacggggtc gtgctcggcg acggcgtggt gctcggcgac ggcgtcgtgc tcggcgacgg
      181 catcctgatg agtgatggca tcctgatgag cgacggcgtc atcatcagca acaccgacgg
      241 gtggcagcga gatcacgtat tcctctctaa ggccatgctt atgggagacg gcgtggtgct
      301 cggcgacggg gtcgtgttgg gcgacggcgt ggtgctcggc gacggagggg tgatgagcac
      361 gtcgagcctc gccacggacg ccgccacgca gtcgcagtcc gtgctcgcca acggcgacaa
      421 cacagactgc atgccggcca tcctgaccaa gaccacgacg accacgacga ccaccacgac
      481 caccacgact acgacgacga ccacaaccac taagaagaag tagtgtgggg gcgattccgt
      541 tcagctcacc ggagagtgca gcgatgacaa ccactcgcca gccgtcatca tcagccgggc
      601 cggacgggcg cggcgccccg tccgtaggga gggccgggga actctcgacc cacctgctga
      661 cggcgggcgc cgagccggag gtcgcctcgt tcctcgccga gcgccccgtc cacaccgtct
      721 tcatggcgag cctgctccgg gacaacgggc ttgagagccc gctcaaccgc ggctccttct
      781 acgcctgccg cgacggccgc agccacctcg aaggcgtggc cctcatcggg cacgcgacgc
      841 tcatcgaggc gcgcagcgag gcggcgctgg ccgccttcgc ccgggtcgcg caggaatgtt
      901 cgctcgcgca cctcgtgcgc ggcgagcagg agaaggtcga atatttctgg agccgctact
      961 cggagtcggg ggcgacgccc cgcctcgtct gccgcgagtt gctgctcgaa cagcgggtgc
     1021 cgcccctgct ccgccgctac atccgggggc tgcgcctggc gacgccctca gacaccaatc
     1081 agatcatgga ggtcaacgcc gcgatggcct tcgaggagag cggcgtcaac cccatggagc
     1141 gcgaccccga gggcttccgc cgccgcacgg cccgccgcat cgagcagggc cggtactggg
     1201 tctggacgag gcgcgggagg ctcgtcttca aggccgacgt catcgccgag acgcccgaag
     1261 ccgcctacct cgaaggcatc tacgtcagcc cggaggagcg cggcaagggc tacggcctga
     1321 gctgcctgag ccaggtcggg caggcgctgc tcgcccgcac gggcgccgtc tgcctgacgg
     1381 tcaacgagca ggtccgcaac acgctcagct tctacgcgaa ggcgggctac cggctgagca
     1441 gctactacga caccatatac ctccagggct cttaactccc cccgaagacc atgagcgcca
     1501 cgccaacggc agcaggcagg cagaggcact tcgatctcta caggtgggcc gtcgtcctcc
     1561 tcggcgcggc ggctttcgcc tactccgcct ccgtcatacc ggcgggcgcc atagacctgc
     1621 gctttctgct gctcgccgtg ctgacggtcg cggccagcgc gcgcctctcg gtgcagatac
     1681 cgcgcttcga cacgaacctg acagtttcgg acaccttcat cttcctcgcc ctgctcctct
     1741 acggcggcgg cccggccgtg ctgctcgcct cggccgaggg ggtctgatcc ggcctccgcg
     1801 tcagcaggag taagaagccc atcaccgtcc tgttcaacgc gggcgtcatg gcctgctcca
     1861 ccttcgccac cgccgccgcc ctgcgcctca tcttcggtga catttcggcc atcgagcacg
     1921 gcctcaccac caccctcgcc gccgccgtcg gcgcagtggc gctcgtgcag tacgcggtca
     1981 atacggggct ggtcgcggcg gggctcgcga tcaagacggc gagcccgctg tggcagacct
     2041 ggagccggca ctacctctgg tcatccatta cgtacctcgc cggggcggcc gccgccgggg
     2101 tggtcgtgat gtttgacggc accgtggggc tctacgccct cgccgtcgcc gtccccgtca
     2161 tcttcgtcgt ctatctgacc tacagccgct acctcgaaga catcaaggcc acggcggcgc
     2221 aggccgagcg cgccgagcgc gagcgcgccg agcaggccga gcgccacatc accgagttgg
     2281 agcgcgccaa ccgcgcgctc gaagagagcc gggagcactt ccgccacgcc gcctaccacg
     2341 acgcgctgac ggggctgccg aaccgcctgc tgctcgccga ccatctgcgc ctcgccatcg
     2401 agcgcgccaa gcgccacccc ggccactcct tcgccctcat cttcctcgac ctcgaccgct
     2461 tcaagtacat taacgactcg ctcgggcacg ccgcgggcga ccaactcctc gtaaccgtcg
     2521 gccgcaggct cgggaaccac ctgcggccga ccgacaccgt cgcgcgcctg ggcggcgacg
     2581 agttcgccgt tctgctcgac gggctggagg acgagggcga cgccatacgc gtcgccgagc
     2641 gcatacagca ggagttgacc acgcccttca acctcggcgg gcacgaggtc ttcactaccg
     2701 cgtccgtcgg gataaccttc agctcgccgg gttacgagaa cccggagaac gtcctgcgcg
     2761 acgccgacac cgccatgtac cgggcgaagg agaacggcaa ggcgcgctac gagctgttcg
     2821 acgcggtgat gcacgcgcgc gccgtcgagc gcctgcggct ggagaacgac ctgcggcggg
     2881 cggtcgagcg cggcgagttc agcgtctatt accagccgat agtctcgctc gactccgaca
     2941 gggtcacggg cttcgaggcg ctggtgcgtt gggagcaccc cgagcgcggc ttcgtgccgc
     3001 cgaccgagtt catccccgtc gcggaggaga ccgggctcat cgtcgaggtc gggcagtggg
     3061 tgctcaggga gtcgtgccgc cagatgcgcg agtggcagcg gctctccttt gacaaccggc
     3121 tgctcaccat cagcgtcaac ctctcgggca agcagttcct ccagccgaac ctgatcggct
     3181 gcgtcaagca gatcctgcac gagacggacc tcgacccccg ctgcctgaag ctggagatca
     3241 ccgagagcgt catgatggag agcgccgagg cggcgagcgc catgctcgtg cagctgcgtc
     3301 acctcggcgt gcagctctcg attgacgact tcggcaccgg ctactcctcg ctctcctacc
     3361 tccaccgctt ccccatcaac accctgaaga tagaccgctc tttcgtcacc cggatggggg
     3421 acgccgggga gaactccgag atcatccgca ctatcctgac gctcgcctcg aacctcggga
     3481 tggacgtcat cgccgagggc gtggaatcga aggggcagct ggcgcagctc aaggcgatgg
     3541 gctgccatta cgggcagggc tacctattct ccaaacccgt gggcgccgcc ggggccgggg
     3601 cgctgatcgg ggcgggaacg cccgcacggg ctaagcagga cagcccgcct gagccctcgc
     3661 ccttgaaaag tgaggacgtg gagcaattca gcagcgcttt cgtgatgtga actggccgat
     3721 taactagcag ccggagcggg ggcgagactc gtcgcccccg ctccggcttt attcggggcc
     3781 tacaacggcc tgtgcttcac tcgacaccgc cttgcttctc ttcgtcgagc tggcggagcg
     3841 tgtccaggat caggttggtg ttgctgaggg cctggatggt cacggcgaac tcttcggcgc
     3901 tcttctcgaa gtcgaaggag cccgcggtga gttcgacgat gaggcggaag gccgtatggc
     3961 cgcgcgcctc gccgcactcg gcgccgacta tgcggccctc gttgaagagg acgcggccgt
     4021 gcctgtcggg gctctcgacg gagagcgcgc cggtcaggcg cgagttctct atgacctgca
     4081 tggcgtcgaa aacgctcacg gtcgagatgt ctccggcgaa ggtgacgggc ttgcgctcgg
     4141 gctcggggcg cgcggccggc tgcgagggcg cgtgctggtg caggtctggc cgtcgggcgc
     4201 ggcgtatggc gtcgaggccg ggcgcgatgt tgatgcgcgg gtctatgtgc tttgcttcga
     4261 gcaggcgctc gaccgcggcc tcgaagttct cgcgcgcgat gtagaggttc gcgagcgtga
     4321 ggcactggcg cgcggcctcg tcggtctgcc tgtgcgagac ggcgacctct cggagcttct
     4381 cgcgcaggac taccgagcgc gggtggtggg cgacggcctc ctgaaggcgc tcgatggcgc
     4441 gctgcggcgc cttgtacttg atgaaaagct cggcgtcgag catcgccgcc tcgacgctct
     4501 cgtccaaact cttcggcctc tccgagtcgc tcattcgcct ccaaagcccc cgcctttcga
     4561 gtctatcaca gtcgggcgcg gcgccgtcgg cgctgccgat ttccgccgag gccgaacgcg
     4621 ccgccggccc tacgaaatgg tgcacccgcg ccgcttcgcg tgcggcttta gggtgcgcgg
     4681 taacgtaccg cggggccgcg ggccggcccg aaagctcaac ttaaacttta ggccgcgcgg
     4741 gctaaatgcc ggttcgccgc ggcggacgat ttaaccctca acgggccgtc ccacgcggga
     4801 aacatggcac gccgcgtgct catcaaaccg gcgtcgcttt ggcccccttt ccagacttcg
     4861 ggttttcacg gaggacggct gttgatgcag gaagagctta cgatgagcag cttaggcgcc
     4921 gcgactgtcc ggctggttga cgcgagctgg ggggcgtacc tccagcgcgc cttcgcaagc
     4981 ctgaaggccg cgggcgagcg ccgacgcacg gacggcgtcc acgcgctcgt cggccgcctg
     5041 cgccgcacgc gcccgtccac ctacgaacac tgcgtgaggg tggcgcgcta ctcgcgcatg
     5101 gccgggcgcg cgctcggcat ggaagaggcg cggctgcggc agctctcctc gacggcgatg
     5161 atgcacgaca tagggaagat actcgtcccg gagtcaatcc tgagccgccc gcgccggccc
     5221 acgcgcgccg agagattcat actccacctg cacccgaacc tgggcgcgct gctcgcctcc
     5281 tacttcggcc tgccggccga gctgcgcata cgcacgcagc accaccacga acgctgggac
     5341 gggcgcggct acccgcaccg cctcggcggc gaggaaatcc ccttcatggc ccgcatagtc
     5401 caggtcgccg acacctacga cgcgatggtc gcgcagcggg cttacaactc gccccgcacg
     5461 cacgaagagg ccgtggccga gctgcgccgc gagtccggca cgcagttcga cccgctgatg
     5521 gtcgaagcct tcctcgactc tttcccggaa cggagcggcg cggcatgagc acttggatga
     5581 gacgagtgag gcgccgcata gcgcgagccc gagcgcggtg cggcaagttc aggtcgcacg
     5641 cgaaaccctg cgaccgcccc gcctgagcgc cgccgcgggc gggccacgcc ttcacctcaa
     5701 cttaaaaacc ctcccggtca aaaatcaacc ctcaatccga ctcgcaccgt gcgcgggcgc
     5761 atggtgcgcg cggggactag aaaagtttcg gcgaaggccc ggcgctgctc gtcggtcgcc
     5821 gcggggcgga gcgcgctgaa gttgatgaac tcggcgccga aggtgaagac cgtcttgttg
     5881 aggaggttgt caacttctac cacggggcgc aggcgcaggc gctcgttgat gcggaactcg
     5941 cgcgcgaggc ttgcgtcgag gtcgaagagg gccgggccga tgccggcgtt gcggggcagg
     6001 tcgcccgcct ggccgatgag cggcaggcgg aaggattcga gcagccgcgc gtcgagcggc
     6061 tcgccggggc ggcgccagcg tatgagtcgc gggtctccgc ggaaggacgg gcggtcgttg
     6121 ctgacgtcgt cgaggttgcg gtcggcgccg cctgtcgaga cgttgaaggg cgcgccggag
     6181 gccgcgcgca gcacgaagcc gaggcgcagc gaatagagcg cgggcggcgc gtcgaacgtg
     6241 ccggagacga cgagtcggtg gcgccggtcg agcaggctgc gggcgcgctc gctcctgaaa
     6301 tcgcccgcgc gcacggcgct cgaagtgttc acgaccccgt cgtcaacgag gcgcgagagt
     6361 gtgtaggccg cgcgcagcga ggcgcggaag cccgcgggcg cccgcgcctc gcgccgccgc
     6421 gcctcgacgg tcaggccgtg gtagaagctg ttgccggcgg agactagctg ctcgacctga
     6481 ccgcgcgaag ggtcggggcg taaaggctgg agcgcggcga gcgccgcttc cagagcggtc
     6541 gttgagccca cgctgtccag gttaaagacc gtgatgggga cgccgaattc cataacacga
     6601 gttatggcgt cggcgttggc ggaagttggg gagaggcgga agcgcaccag ctcgcccgcg
     6661 gccaccgcgt catagacggg gcgcgcgccc gaggcgtctc ggaagttcgg gaagtcgcga
     6721 gagagaaggt actcggcgaa gtcgcgcaag ccgaccggaa gacgaggggc gttcgcgttt
     6781 tatattaacc aaaaagttgt gtgtatgata cgccgccctt taattatgcg ggttcggacg
     6841 cagtcacata aatattttgt gtgatcgtct ggcgagagaa atgcttatca ccgtcgtttc
     6901 tacgacgaga agctagtgag actttcacct gattcgggat gtgcg
//
LOCUS       DASPKR010000481         5072 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1105756, whole genome shotgun sequence.
ACCESSION   DASPKR010000481 DASPKR010000000
VERSION     DASPKR010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5072)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5072
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1105756"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            156..1229
                     /locus_tag="VD968_12865"
     CDS             156..1229
                     /locus_tag="VD968_12865"
                     /inference="COORDINATES: protein motif:HMM:TIGR00765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HYE15331.1"
                     /translation="MLKSLSLGGLGWKELAKRVWAEASEDDVLGRAAQLAYYFLLALF
                     PALLFLVSLIGYFAGEDSELRADLFRYLSTVLPGEASQLVDDTVRDVTQGSGGGKLSF
                     GILATLWAASNGMGAISEALNVAYDVKETRPWWKARLVAVGLTLALAFLIISALVLVL
                     YGHSLAEWVAVAFGLGHAFELTWKVVQWPIVLLFVLLAFALIYYFAPSVRDQDWKWVT
                     PGSLVAVVLWLLVSFGFKFYLNLFNSYSATYGTLGAVIILMLWFYLTGAAILVGGEIN
                     SEVEHEMAKQGAPDAKEKGEKSPGGRKERATTASRRGKTAAPEKGSAGGRDAARSFSV
                     KKLAVVLGARALGMAGLGARKSR"
     gene            complement(1249..2520)
                     /locus_tag="VD968_12870"
     CDS             complement(1249..2520)
                     /locus_tag="VD968_12870"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYE15332.1"
                     /translation="MGIPRSCKRFILAACMAAVCLSAPAAPLRVQRAGASPYDAHVKA
                     LMARPEVLAAFDHVEKSRERILREWIAITEVNAPSGKERERAALVEKILREQKSLDVR
                     YDSAGNLVATRKGTGGGPTVVIDAHLDTVFQEGLKIKAEMRDGRLYAPGVGDDTRNIV
                     AMLAVARALDAADVKTKGDIVFLFTVEEETTFRGVEEYVKENKAKIGHYIALDGGYEG
                     FTYGGIGINWYRHHFIGPGGHTRSRTPPHSATLPMARAIARIYELPVPSSPPSNLNIG
                     MTGGSDVVNAKAGDAWFTVDLRSTSSDVIADLEKKIAAIVKEEAEREKMTVRTELISS
                     TPAAQIPGHRESALVKTSEAVHYAMGFQPSITITGSNNSNVALIAGISAISTGAAPCG
                     DSHALTEWCEIEPIYKGIKKVLLLGVAMAQM"
     gene            complement(2543..3019)
                     /locus_tag="VD968_12875"
     CDS             complement(2543..3019)
                     /locus_tag="VD968_12875"
                     /inference="COORDINATES: protein motif:HMM:NF042704.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE15333.1"
                     /translation="MGALQGLLRRLGLDNLMTPRQRARVFLLDDDTARHEWFSRQFKG
                     DTLEVASDHERAIELLKSNHYDLIFLDHDLLPEHYYAETFDDERTGYAVARWLAEHPD
                     RLAATPVIVHTRNADGALRMVELMRSVGRHAEHVPFQLLGHKIKRLRGQVSARPSY"
     gene            3227..3352
                     /locus_tag="VD968_12880"
     CDS             3227..3352
                     /locus_tag="VD968_12880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15334.1"
                     /translation="MGGLKCRACRRFILRRCHVVFLVLLGIAAAVVLLELIARMS"
     gene            3362..>5072
                     /locus_tag="VD968_12885"
     CDS             3362..>5072
                     /locus_tag="VD968_12885"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bi-domain-containing oxidoreductase"
                     /protein_id="HYE15335.1"
                     /translation="MKQILQNRRTGAVEVADVPAPALRRGRVLVRAAASLISAGTERA
                     AVGDNRKGLLGRAVAQPELVRKAVARAREEGLMSAVEAVRSKLEESVALGYSAAGVVV
                     GVGEGVEGFRAGDRVACAGLGYASHAEVLSVPKNLCARVPEGVELSEAAYATLGAIAL
                     QGVRLAAPTLGESVVVVGLGLLGQLATQLLTANGCRVFGVDPDAGRVALARSLGADDG
                     CAPDEGAARKILDWSRGRGADAVLITAATESSQPVVLAGEVSRLKGRVVVVGQVGMEV
                     PRDLYFRRELSLQVSMSYGPGRYDPEYEERGHDYPVAYVRWTEGRNIEAFLDLLAAGR
                     VNVSRLTTHRFPVEEGAQAYRLITGEAGEPYLGVLLEYDAERELGRRFSLKPRAAESV
                     DERAAASKAAAVRIGLVGAGGYATAMLLPQFKAAGAELVSIATASGVSALNVGRRFGF
                     ESCASTAEEVIEDPSVNLVVVATRHDSHARLARLALEAGKSVFVEKPLALSEEELEGV
                     LGAARRSAGRLMVGFNRRFSPLAVKAKEFFEGRRWPLSIVYRVNTGRVPREHWSQNPV
                     EGGG"
BASE COUNT          741 a         1652 c         1790 g          889 t
ORIGIN      
        1 cgcagacggg cggccccgtc ggcttcatac aagacttctt cgtaaacacg cgctggcgcc
       61 gcaccggcac cctagtcaaa taagtcgtaa acaattcgtg actctttcga ctcccggcgc
      121 gccgacacta cggcgccgga ggggagggat tcacgatgct taagtctttg agcctcgggg
      181 ggctcggctg gaaggagctg gcgaagcggg tctgggctga ggccagcgag gacgacgtgc
      241 ttgggcgcgc cgcccagctc gcctactact tcctgctcgc gctcttcccg gcgctcctct
      301 ttctggtctc gctcatcggc tacttcgcgg gcgaggacag cgagctgcgc gcagacctct
      361 tccgctacct gagcacggtg ctcccgggcg aggcgtcgca gctcgttgac gacacagtgc
      421 gcgacgtgac gcagggcagc ggcgggggca agctctcctt cggcatactc gccacgctct
      481 gggccgcctc gaacggcatg ggcgccatca gcgaggccct caacgtcgcc tacgacgtga
      541 aggagacgcg gccgtggtgg aaggcccgcc tcgtcgccgt ggggctcacg ctcgcgctcg
      601 cgttcctaat catctcggcg ctcgtcctcg tcctctacgg ccactcgctg gccgagtggg
      661 tcgcggtcgc cttcggcctc ggccacgcct tcgagctgac gtggaaggtc gtccagtggc
      721 cgatagtcct gctcttcgtg ctgctcgcct tcgcgctcat ttactacttc gccccttcgg
      781 tgcgcgacca ggactggaaa tgggtcacgc ccggctcgct cgtcgccgtc gtgctctggc
      841 tgctggtctc cttcggcttc aagttctatc tgaacttatt caactcctac agcgccacct
      901 acggcacgct cggcgccgtc ataatcctca tgctctggtt ctacctgacg ggcgcggcca
      961 tactcgtcgg cggcgagata aactccgagg tagagcacga gatggcgaag cagggcgcgc
     1021 ccgacgccaa ggaaaagggc gagaagagcc ccggcgggcg gaaggagcgc gcaacgacag
     1081 cgtcgaggag gggcaagacc gcggcaccgg agaaggggag cgcgggcggc cgcgacgccg
     1141 cgcgctcgtt cagcgtcaag aaactcgccg tcgtcctcgg cgcgcgtgcg ctcggcatgg
     1201 cgggcctcgg cgcgcgcaag tcgaggtagg tgaggttaaa acgccgcgtc acatctgcgc
     1261 catcgcgacg ccgagcagta ggactttctt gatgcccttg tagatgggct ctatctcgca
     1321 ccattctgtg agggcgtgcg agtcgccgca gggcgccgcg ccggtagaga tggcggagat
     1381 gccggctatc aaagcgacgt tcgagttgtt cgagcccgtt atggttatcg agggctggaa
     1441 ccccatcgcg tagtggacgg cctcggaggt cttcaccagc gcggactcgc ggtggcccgg
     1501 tatctgcgcc gcgggcgtcg aggagatgag ctccgtccgc accgtcatct tctcgcgctc
     1561 ggcctcctcc ttcacaatcg ccgctatctt cttctcaagg tctgctatca cgtcgctgct
     1621 ggtcgagcgc aggtcaacgg tgaaccacgc gtccccggcc ttcgcgttga caacgtcgga
     1681 gccgcccgtc atgcctatgt tcagattcga gggcgggctc gaaggcacgg gcagctcgta
     1741 tatgcgcgcg atggcgcggg ccatcgggag cgtcgcggag tggggcggcg tgcgcgagcg
     1801 cgtgtggccg ccggggccta tgaagtggtg cctgtaccag ttgataccga tgccgccgta
     1861 ggtgaagccc tcgtagccgc cgtcgagcgc gatgtagtgg cctatcttcg ccttgttctc
     1921 cttgacgtac tcctctacgc cgcggaaggt cgtctcctcc tcgacggtga agaggaagac
     1981 gatgtcgcct ttggtcttta cgtcggccgc gtcgagggcg cgcgcgacgg cgagcatggc
     2041 gactatgttg cgcgtgtcgt cgcccacgcc cggcgcgtag aggcggccgt cgcgcatctc
     2101 cgccttaatc ttcagcccct cctggaacac ggtgtcgagg tgcgcgtcaa tgacgaccgt
     2161 cgggccgccg cccgtcccct ttcgcgtggc gacgaggttc ccggccgagt cgtagcgcac
     2221 gtccagcgac ttctgctcgc gcaggatttt ctctacgagg gccgcgcgct cgcgctcctt
     2281 gccggagggc gcgttcacct ccgttatggc tatccactcg cgcagtatgc gttcgcggct
     2341 cttctcgacg tggtcgaagg cggcaaggac ttccgggcgg gccatcagcg cctttacgtg
     2401 cgcgtcgtag ggggaggcgc cggcccgctg cacgcgcaac ggcgcggccg gggccgagag
     2461 gcagacggcg gccatgcagg cggccagaat aaatctcttg caagaccgtg ggattcccat
     2521 aaactgtgtc ggcaccgggc agtcagtagg acgggcgcgc gctcacctgc ccgcgcagcc
     2581 tcttgatctt gtggccgagc agctggaaag gcacgtgctc ggcgtggcgc ccgacgctgc
     2641 gcatcagctc gaccatgcgc agcgccccgt cggcgttgcg cgtgtggacg atgacgggcg
     2701 tggcggcgag gcggtcgggg tgctcggcga gccagcgcgc gacggcgtag ccggtgcgct
     2761 cgtcgtcgaa cgtctcggcg tagtagtgct cgggcaaaag gtcgtggtcg aggaatatga
     2821 ggtcgtagtg gttcgacttg agcagctcga tggcgcgctc gtggtcggat gcgacttcga
     2881 gcgtgtcgcc cttgaactgc cggctgaacc actcgtgccg ggccgtgtcg tcgtccagaa
     2941 gaaagacgcg cgctctctgg cgcggcgtca taaggttgtc caggccgagc cgtcgtagta
     3001 aaccttgcaa ggcacccatc gtttttacgg ccgccgcgcc cggcggccgg agcgtcggcc
     3061 ggggcggcgc ttctcctcat gttcgttccg ggggaggctt gaggactata gcacaacgcc
     3121 gcggcgcggc ttgaacggcg gcctgcgttc gtggcatgtt tgcccgaagc cggacaggga
     3181 gcttgaaggg atgagcaaat gcccgtactg cgctaggccc cttcggatgg gcgggctaaa
     3241 gtgccgcgcc tgccgccgct tcatcctgcg caggtgccac gtcgtcttcc ttgttttgct
     3301 cggcatagcc gccgccgtcg tgctcctcga actgatcgca cgcatgtcct gagcccgccg
     3361 gatgaagcag attctacaga accgaagaac cggcgccgtc gaggtggcgg acgtgccggc
     3421 cccggcattg cggcgaggcc gtgtgctcgt gcgcgcggcc gcctcgctca taagcgcggg
     3481 gactgagcgc gcggccgtgg gcgacaacag gaaggggctg ctcgggcgcg cggtcgcgca
     3541 gcctgaactg gtgaggaaag cggtcgcgcg ggcgagggaa gagggcctga tgagcgcggt
     3601 cgaggccgtg cgctcgaagc tcgaagaatc ggtggcgctg ggctacagcg ccgccggcgt
     3661 ggtcgtcggc gtgggcgagg gcgtcgaggg tttccgcgca ggcgaccgcg tggcgtgcgc
     3721 tggtctaggt tacgcctctc acgccgaggt gctctccgtg ccgaagaacc tgtgcgcgcg
     3781 cgtccccgag ggcgtcgaat taagtgaggc tgcatacgcg acgctcggcg cgattgcctt
     3841 gcagggagtg cggctcgccg cgcccacgct cggcgagagc gtcgtggtcg tcgggctcgg
     3901 ccttctgggg cagctcgcga cccagttgct cacggcgaac ggctgccgcg tcttcggcgt
     3961 tgacccggac gcgggccgcg tcgcgctcgc gcgctcgctc ggcgcggacg acggctgcgc
     4021 gcccgacgag ggcgccgccc gtaaaatcct cgactggtcg cgcggccgcg gcgccgacgc
     4081 cgtgttgatt acggcggcga ctgagtctag ccagccggtc gtgctggccg gcgaagtgtc
     4141 acgcctgaag gggcgcgtcg tcgtggtcgg gcaggtcggg atggaagtgc cgcgcgacct
     4201 ctacttcagg cgcgagcttt cgctacaggt ctcgatgtct tacgggccgg ggcgctacga
     4261 ccccgagtac gaggagcgcg gccacgacta ccccgtggcc tacgtgcgct ggactgaagg
     4321 gcgaaacatc gaagccttcc tcgacctgct cgcggcaggc cgcgtcaacg tctcgcgcct
     4381 gacgacgcac cgcttccccg tcgaagaagg cgcgcaagcc taccggctga ttacgggcga
     4441 ggcgggcgag ccttacctcg gcgtgctgct tgagtacgac gccgagcgcg agctggggcg
     4501 ccgcttcagt ctgaaacctc gcgcggccga aagcgttgac gagagggcgg ccgcctcgaa
     4561 ggcggccgcc gtgcgcatcg ggcttgtcgg ggcgggcggt tacgcgaccg cgatgcttct
     4621 gccgcagttc aaggcggcgg gcgccgagtt ggtctcaatc gcgacggcct cgggcgtgtc
     4681 ggccctaaac gtcggccggc ggttcggctt cgagtcctgc gcctcgaccg ccgaggaggt
     4741 catagaagac ccgagcgtta acctcgtcgt tgtggcgacg aggcacgaca gccacgcgcg
     4801 gctcgcccgt ctcgcgctcg aagcggggaa gagcgtcttc gtcgagaagc cgctcgcgct
     4861 ctcggaggag gagctcgaag gggtgctcgg cgccgctcgc cgctccgccg gccgcctgat
     4921 ggtcggcttc aaccgtcgct tctcgccact cgccgtgaag gcgaaggagt tcttcgaggg
     4981 gcggcgctgg ccgctctcta tagtctatcg cgtgaacacc ggccgcgtgc cgcgcgagca
     5041 ctggtctcaa aaccctgtcg agggcggcgg cc
//
LOCUS       DASPKR010000482         3454 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1882380, whole genome shotgun sequence.
ACCESSION   DASPKR010000482 DASPKR010000000
VERSION     DASPKR010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3454)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3454
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1882380"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..294
                     /locus_tag="VD968_12890"
     CDS             <1..294
                     /locus_tag="VD968_12890"
                     /inference="COORDINATES: protein motif:HMM:NF020253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage T C-terminal barrel
                     domain-containing protein"
                     /protein_id="HYE15336.1"
                     /translation="KKLAGLVFEGGGEGVRPGARLKSGEGARAAGQVTSVARSPRLGR
                     LVALGIVKYDFLAPGTTLQVFDGEEEVCAARVSGLPHVRGSWHAAAEGEGDGR"
     gene            284..577
                     /locus_tag="VD968_12895"
     CDS             284..577
                     /locus_tag="VD968_12895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15337.1"
                     /translation="MGAEGEGARGGGLAYEQARLAYTIIQSLLEHTRVTQDLVALMAQ
                     VIDAETQEALTGTPYWAAYMDSRRALERTRQDVEKFAEVWTRLAEEAEPRAGS"
     gene            711..2597
                     /locus_tag="VD968_12900"
     CDS             711..2597
                     /locus_tag="VD968_12900"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15338.1"
                     /translation="MRVMLTAVALLFALAAPSRAQTFEVGGAGAWRGEHEEWALQALF
                     TKDGREVVSAGLDGRVRFWDAATGKLARELKAPSPVLSLALSPDGSRLAAGDARGVVS
                     LWEVATGRLERELKTGARAVNAVAFNSDGSALAAGCEDGRVRVWPAAEGGEKPAAEVE
                     AGGDVVSLVGVPGQPSRLALGVLNRKEPTKSGVAVLDWPTKERVHFFKGSPGVRTLAA
                     SPDGRLLAAAGFRPATLLSLVPAEGGRFEASVRVLGESDEPAHIAVWDLKTGKALSVF
                     TAELGGAALAFSPDGRLLASAGEHGVLLFDAEVFLERGRAGSRTRVSAIAFDAPGARL
                     AIARERERPGAGKGGPEGLLDPALVAAALAAKDAVHSGAYVAGPGASVTGGSTVEVVA
                     VRERTSPESARLWEATRLLRGDAAAARAALEKLTKDFPSYGEARRVLAVLSKDGRGAR
                     EWAEGAVKADPACAACHRTLGDLLFNADEFAAAVASYRRALELDPEAGLVAGRLADAL
                     NRLALSRLKPDNAASRREAAALFEEALRLRPADAQIINNLASIHYFGRDLDGSIRLLE
                     LARRLRPDMARIHYDLGHSYRYKGRTEDAVRSYRRYVALGEPGEEARVERAKKIIEEL
                     TKKQ"
     gene            complement(2662..>3454)
                     /locus_tag="VD968_12905"
     CDS             complement(2662..>3454)
                     /locus_tag="VD968_12905"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HYE15339.1"
                     /translation="PPGSGRAVFYPRGTRAPDMLDIYARAFDTVEVDSTFYATPSEPA
                     VDGWAKRTPDGFTFALKLPQAITHTHALRGRAAREGLEEFCARARRLGPKLAAVLVQL
                     PPQFEATRENSAALEEFLAWLPRDIRFAFEFRDSFWFEAEILGPLARSANVSLALVEG
                     RWAARERVWRAAAATLDSTDFAYLRWMGERDLTRFDEVQRPRDAGLERWAAAIERLRE
                     RVPKVFAYFSNFYEGHAPASANKLKRLLGQAVVEPGDLEDQPSLF"
BASE COUNT          504 a         1157 c         1304 g          489 t
ORIGIN      
        1 aagaaactcg cggggctcgt cttcgagggc ggcggcgaag gcgtgcgccc cggcgcgcgc
       61 ctcaagagcg gggaaggcgc gagggcggcc gggcaggtca cgtccgtcgc tcgctctccg
      121 cggctcggcc gcctcgtcgc gctcggcatc gtcaagtatg acttcctcgc gccggggact
      181 acgcttcaag tcttcgacgg tgaggaggaa gtttgcgcgg cgcgcgtctc ggggctgccg
      241 cacgtgcgcg ggagctggca cgcggccgcg gagggagagg gcgatgggcg ctgagggcga
      301 aggcgcacgg ggtggcgggc tcgcttacga gcaggcgcgg ctcgcctaca cgatcataca
      361 gtcgcttctc gagcacacgc gcgtcacgca agacctcgtc gcgctgatgg cgcaggtcat
      421 tgacgcggag acacaggagg ccctcacggg cacgccctac tgggccgcct acatggacag
      481 ccgccgcgcg ctggagcgca cgcggcagga cgtggagaag ttcgccgagg tctggacgcg
      541 actggccgaa gaggccgagc cccgcgccgg ctcctgaagg ggccgcgaca gctgtcctga
      601 ttttactgcc ccctcatctc ggaaagttcc cgcccacaac tcgattgtct cgcccgaggc
      661 ggcggcaccg cgcttgcctc caacgccgtg ttaaaggagg tcgtgtgtta atgagagtga
      721 tgctgacggc cgtcgcgctg ctcttcgcgc tcgcggcgcc gtctcgcgcg cagaccttcg
      781 aggtcggcgg ggcgggcgcg tggcggggcg agcacgaaga gtgggcgcta caagccctct
      841 tcaccaagga cggccgcgag gtcgtctcgg ccgggctgga cgggcgcgtg cgtttctggg
      901 acgcggcgac gggcaagctc gcgcgcgagc ttaaggcgcc gagcccggtg ctctcgctcg
      961 cgctctcgcc cgacgggtca aggctcgcgg ccggcgacgc gcgcggcgta gtgagcctct
     1021 gggaagtcgc cacggggcgg ctcgaacgtg agttgaagac gggcgcgcgg gccgtcaacg
     1081 cggtcgcctt taactcggac ggctcggcgc tcgcggccgg gtgcgaagac gggcgcgtgc
     1141 gcgtgtggcc cgcggccgaa gggggcgaga agcccgcggc cgaggtcgaa gcgggcggcg
     1201 acgtggtgtc gctcgtcggc gtgccggggc aaccgtcgcg gctcgcgctc ggcgtgctca
     1261 accgcaagga gccgacgaag agcggcgtcg ccgtcctcga ctggcccacg aaagagcgcg
     1321 ttcatttctt caagggcagc cccggcgtgc gcacgctcgc ggcgtcgccg gacgggcgcc
     1381 tgctcgcggc cgcgggcttc cgtccggcga cgctgctctc gctcgtccca gcggagggcg
     1441 ggcggttcga ggcgagcgtg cgcgtgctcg gcgagtcgga cgagccggcg catatcgcag
     1501 tgtgggactt gaagacgggc aaggcgcttt cggtcttcac ggcggagctg ggcggggcgg
     1561 cgctcgcctt ctcgccggac gggcggttac tggcctcggc cggcgagcac ggcgtgttgc
     1621 tcttcgacgc ggaagtcttc ctcgagcgcg gccgggccgg gtcgcgcacg cgcgtgagcg
     1681 cgattgcctt cgacgcgccg ggcgcgcgcc tcgcgattgc gcgcgagcgc gagcggccgg
     1741 gcgcgggcaa gggaggcccc gagggcctgc tcgaccccgc gctcgtggcg gcggcgctgg
     1801 cggcgaaaga cgctgtgcac tcgggcgctt acgtcgcggg cccgggcgcg agcgtgacgg
     1861 gcggctcgac ggtggaagtc gtcgcggtgc gcgagcgcac gtcgcccgag tcggcgaggc
     1921 tgtgggaggc gacgcggcta cttcggggcg acgccgcggc ggcgcgcgct gcgctcgaaa
     1981 agttgaccaa agatttcccg tcctacggcg aggcccggcg cgtgctggcg gtgctctcga
     2041 aggacgggcg cggcgcccga gagtgggccg aaggggcggt caaggccgac cccgcctgcg
     2101 ccgcctgcca ccgaacgctc ggcgaccttc tcttcaacgc ggatgagttc gccgctgcgg
     2161 tcgcgagtta ccgacgcgcg ctcgagctcg accccgaagc ggggctcgtc gccggccggc
     2221 tcgcagacgc actcaaccgg ctcgcgctct cgcgcctaaa gcccgataac gcggcgagcc
     2281 gccgcgaggc ggccgcgctg ttcgaagagg ctctgcggct gcggccggcc gacgcgcaga
     2341 taatcaacaa cctcgcgtcc atacactact tcggcagaga cctcgacggc tcgataaggc
     2401 tgctcgagct tgcgcgccgg ctgcggcccg acatggcgcg catacactac gacctcggcc
     2461 acagctaccg ctacaagggc cgcacggagg acgccgtccg ttcctaccgc cgctacgtcg
     2521 cgctcggcga gccgggcgag gaggcccgcg tcgagcgcgc gaagaagatc atagaagagc
     2581 tgacgaaaaa gcagtaggca gaaggcggaa agcagaaggc agtcaagagg agttatcttg
     2641 actgccttct gctttctctt ttcagaagag cgacggctgg tcttcgaggt ctcccggctc
     2701 gacgaccgcc tggccgagga ggcgcttgag cttgttggcg ctggcgggcg cgtgcccctc
     2761 gtagaagttg ctgaagtagg cgaatacttt ggggacgcgc tcgcgtaggc gctcgattgc
     2821 ggcggcccac ctttcaagcc ccgcgtcgcg cgggcgctgc acttcgtcga agcgcgtgag
     2881 gtcgcgctcg cccatccagc gcaggtaagc gaagtctgtg gagtcgagcg tcgcggcggc
     2941 cgcgcgccag acgcgctcgc gcgccgccca ccgtccctcg acaagcgcga gcgagacgtt
     3001 cgcgctccgc gcgagcggcc ctaaaatctc cgcctcgaac cagaacgaat cccggaactc
     3061 gaaggcgaaa cgtatgtcgc ggggaagcca cgcgaggaac tcttcgagcg ccgccgagtt
     3121 ctcgcgcgtc gcctcgaact gcggcggcag ttgcacgagc acggccgcga gcttcgggcc
     3181 gagccgacga gcgcgcgcgc agaactcttc cagcccttcg cgcgcggccc ggccgcgcag
     3241 cgcgtgcgtg tgcgttatcg cctgcggcag cttgagcgcg aatgtaaagc cgtcgggcgt
     3301 gcgcttcgcc cagccgtcaa cggccggctc cgaaggcgtc gcgtagaagg tcgagtcaac
     3361 ctccacggtg tcgaaggcgc gcgcgtatat gtcgagcatg tcgggggcgc gagtgccgcg
     3421 cgggtagaag actgcgcggc cgcttccggg cggc
//
LOCUS       DASPKR010000483         2785 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_329435, whole genome shotgun sequence.
ACCESSION   DASPKR010000483 DASPKR010000000
VERSION     DASPKR010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2785)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2785
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329435"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..796)
                     /locus_tag="VD968_12910"
     CDS             complement(<1..796)
                     /locus_tag="VD968_12910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015351969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE15340.1"
                     /translation="MSEGVVSIFREGVLAGRVALVTGGGTGITGGVARALAEAGARVA
                     LVSRKIENLEPAAAAINQAGGEALAFAADVRDYAQVERAVAAAVERFGALDIVVNGAA
                     GNFLCPAAELSPNGFGTVVDIDLKGTFNVCRAAFAELKKRRGQILNISATLHYVGTPY
                     QLHVSAAKAGVDALTRNLAVEWGRHGIRVNAIAPGPIEDTEGMKRLVPPDVKERLRRS
                     VPLGRFGRIRDVETCAVFLCSDAASFINGAVIVVDGGHWLNNSTLGA"
     gene            complement(793..1524)
                     /locus_tag="VD968_12915"
     CDS             complement(793..1524)
                     /locus_tag="VD968_12915"
                     /inference="COORDINATES: protein motif:HMM:NF013168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HYE15341.1"
                     /translation="MLIIPAVELKDGRCARPAPARAGGAKAYDGDPVEVAKRFEGAGA
                     RMLHVVDLDDEAAGPNSKSRKAARRVIRAVEIPVQFAGGVRGVADVQQLIEYGAAQVV
                     IGALAAESPETLEKFVQLFGFRVCVGIAARRGSVVFADGRERGAAKLSAVELARRAAD
                     AGVDRVVYAEVSRERASARRFDLGQTCAIARESGLRVTASGAVTSLADIKRLRTIRRC
                     GVDSVIVCDALYNGRLTLREALRAA"
     gene            complement(1589..2083)
                     /locus_tag="VD968_12920"
     CDS             complement(1589..2083)
                     /locus_tag="VD968_12920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15342.1"
                     /translation="MTETTKRTLAATAALALLTLAPACRGGDSKKGEGQQGSASNAAA
                     NPAGAQTADSTKLDANIGRLEKLAEKNPADEDTRQLLARAYVMRANAHRTAGRTREAL
                     EDYRRAQRLDLDNEEAIKNISELSPQVEGTPQEGEYGEPPPLPVNPNVTGGEEGPTPT
                     PKKP"
     gene            complement(2091..>2785)
                     /locus_tag="VD968_12925"
     CDS             complement(2091..>2785)
                     /locus_tag="VD968_12925"
                     /inference="COORDINATES: protein motif:HMM:NF013491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PEP/pyruvate-binding domain-containing protein"
                     /protein_id="HYE15343.1"
                     /translation="KAGRMSDSLREAVLRKVRAEYAGKGLFVRSSSNVEDLPNFSGAG
                     IYDTVPNVKGEEKLVEAIKTVWASLWNFQAYEARERAGVDHTLAYMGVLIQEGVNADS
                     AGVMITADPFDPENRGAIYISAKRGLGIKVVEGKRIPEQVIFLPRANSVKVLTRSEEE
                     SLLTFDEAGGVREVPISGERAVLTDEMVRRLARTASLIKNVFRGREQDIEWIYMRGQI
                     YIVQSRPYVQGG"
BASE COUNT          390 a          983 c          927 g          485 t
ORIGIN      
        1 cggcgccgag cgtcgagttg ttgagccagt ggccgccgtc aacgacgatg acggcgccgt
       61 tgatgaagct cgcagcgtcg gagcacaaga aaacggcgca ggtctctacg tcgcgtatgc
      121 gcccgaagcg gccgagcggg actgagcgcc gcagccgctc cttaacgtcc ggcgggacga
      181 ggcgcttcat cccctctgtg tcttcaatcg gccccggcgc gatggcgttc acgcgtatcc
      241 cgtggcggcc ccactctacg gcgaggttgc gcgtcagggc gtcaacgccg gccttcgccg
      301 cggagacgtg tagctggtac ggcgtcccga cgtagtggag cgtggcgctg atgtttagaa
      361 tctggccgcg ccgtttttta agctccgcga aggcggcgcg gcagacgttg aaggtgcctt
      421 tgaggtctat gtcaacgacg gtgccgaagc cgttggggga aagctcggcc gccgggcaga
      481 ggaagttgcc ggccgcgccg ttgacgacga tgtcgagcgc gccgaagcgc tcgacggcgg
      541 ccgcgacggc gcgctcgacc tgcgcgtagt cgcgcacgtc ggccgcgaac gccagagcct
      601 cgccgcccgc ttgatttatc gccgccgcag cgggctcaag attctcaatc ttcctactca
      661 cgagcgcgac gcgcgcgccc gcctcggcga gggcgcgggc cacgccgccc gttatccccg
      721 tgccaccgcc cgtcacgagc gccacgcgcc ccgccagcac gccctcgcgg aaaatgctca
      781 caacgccttc gctcatgccg cccgcagcgc ctcccgcaaa gtcagtctcc cgttgtagag
      841 cgcgtcgcag acgatgacgc tgtcaacgcc gcagcgcctt atcgtgcgaa gccgctttat
      901 gtctgcgagc gacgtgacgg cgcccgacgc cgtcacgcgc aggcccgact cgcgcgcaat
      961 cgcgcaggtc tggccgaggt cgaagcgccg cgccgaggcg cgctcgcgcg agacctccgc
     1021 gtaaacgacg cggtcaacgc ccgcgtcggc cgcgcgccgc gcaagctcca ccgcgctcag
     1081 cttcgcggcc ccgcgctcgc gcccgtctgc gaagacgacc gagccgcggc gcgcggcgat
     1141 gccgacgcat acgcggaagc cgaagagctg cacgaatttt tcgagcgtct cgggcgactc
     1201 cgctgccagc gcgcctatga cgacctgcgc cgcgccgtac tcgattagct gctgcacgtc
     1261 ggcgacgccg cgcacgcccc cggcgaactg aaccgggatc tcaacggcgc ggatgacgcg
     1321 gcgcgctgcc ttgcggcttt tcgagttagg gcccgccgcc tcgtcgtcca aatcaactac
     1381 gtgtagcatg cgcgcgcccg cgccctcgaa cctcttcgcg acctcgacgg ggtcgccgtc
     1441 gtatgccttc gccccgcccg cgcgggccgg cgcgggccgc gcgcaccgtc cgtccttcaa
     1501 ttcaacggcg ggaatgatga gcatggtaaa tggcgaatag taaatggcga caggggcgaa
     1561 gcagtcgctc ccatttaccg tttactgttc aaggcttctt cggcgtgggc gtcggcccct
     1621 cctcgccgcc ggttacgttg gggttgacag gcaggggcgg cggctctccg tactcgccct
     1681 cctgcggcgt gccttccacc tgcggcgaga gctcgcttat gttcttgatg gcctcctcgt
     1741 tgtcgaggtc gaggcgctgc gcgcggcggt agtcttcgag cgcctcgcgc gtgcgcccgg
     1801 ccgtccggtg cgcgttggcg cgcatgacgt aggcgcgcgc gaggagttgt ctcgtgtcct
     1861 cgtcggccgg gttcttctcg gcgagctttt cgaggcggcc gatgttggcg tcgagcttcg
     1921 tcgagtcggc cgtctgcgcg cccgcggggt tggcggcggc gttggaggcc gagccctgct
     1981 gcccttcgcc cttcttcgag tcgccgcccc ggcacgcagg cgcgagcgta agcagcgcga
     2041 gcgcagcggt cgccgcgagc gtcctcttcg tcgtctcggt catcgagccc tcagcccccc
     2101 tgcacgtagg ggcgcgactg aactatgtat atctggcctc gcatgtaaat ccactcgatg
     2161 tcctgctccc ttccgcggaa cacgttcttg atgagcgaag cggtgcgcgc gagccgcctc
     2221 accatctcgt ccgtgagcac ggcgcgctcg cccgagatgg ggacttcgcg gacgccgccc
     2281 gcctcgtcga aggtgagcag gctctcctcc tccgagcgcg tcaagacctt cacggagttt
     2341 gcgcgcggga ggaagatgac ctgctcgggg atcctcttgc cctcgacgac ctttatcccg
     2401 aggccgcgct tggcgctgat gtagatggcg cctcggttct cggggtcgaa cgggtcggcc
     2461 gttatcatca cgccggcgct gtcggcgttg acgccctcct gtatgagcac gcccatgtaa
     2521 gcgagcgtgt ggtcaacgcc ggcgcgctcg cgagcctcgt aggcctggaa gttccagagc
     2581 gacgcccaca cggtctttat cgcctctacg agcttctcct cgcccttgac gttcggcacg
     2641 gtgtcgtaga tgcccgcgcc gctgaagttc ggcaggtctt cgacgttcga ggagcttcgg
     2701 acgaagaggc ccttgccggc gtactcggcg cgcaccttcc tgagcacggc ctcgcgcagc
     2761 gagtcgctca tgcgcccggc cttga
//
LOCUS       DASPKR010000484         3792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1237272, whole genome shotgun sequence.
ACCESSION   DASPKR010000484 DASPKR010000000
VERSION     DASPKR010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3792)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3792
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1237272"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..990)
                     /gene="lpxD"
                     /locus_tag="VD968_12930"
     CDS             complement(<1..990)
                     /gene="lpxD"
                     /locus_tag="VD968_12930"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: protein motif:HMM:NF002060.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HYE15344.1"
                     /translation="MKLSELARLTGATVQGDFAEVEITGAAGLDEAEPGHVTFLANPR
                     YTPRVQTTRASAIYVGEGVEVGRGDIAALRARDPYLAYTRALRTFHPEPEFEPFVHPS
                     AVVDPTARLGEGTHVGACSVIGRGVEIGRRVLIHPNVTIYDGARVGDDSVLHSGVALR
                     EGTQVGARVRIHNNAVVGSDGFGYAKDEEGSWLKIPQTGRVCIEDDVEIGACATIDCA
                     SVGETRIARGTKIDNLVQIGHSCTVGEDSLLCAQVGLAGSSHVGSRVILAGQVGVAGH
                     LRIGDDVVITAKSATSHDIPPGRVLSGIPAFDNREWLRSTAAFRRLGEMQRTIR"
     gene            complement(1001..3451)
                     /gene="priA"
                     /locus_tag="VD968_12935"
     CDS             complement(1001..3451)
                     /gene="priA"
                     /locus_tag="VD968_12935"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF004066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HYE15345.1"
                     /translation="MALPLRLAQTYTYRLPLALREAARVGARVLVPFGRTLATGYVVA
                     LHDALDPATEIEDSGLKDAEELLDAEPLITPEVLEITRWISEYYAAPWGEVLKAALPA
                     GINSTIEQVITITQEGRDELARLPARRATTARAHVLRLASADGSTTLREAARELGQAR
                     AAKAARELQRSGWVTLSHRARGAQAKPKRRKAVRLLPPDGAETNGSRPLTAAQQRVVG
                     ALVGAGGEMLFAELLEAAQASAATIQTLERRRLLEVFVREVRRDPLAGAQLPDRDEFH
                     LTEAQAAALREINDAQARGGYAAFLLHGVTGSGKTEIYIRAMREALRRGRTAMMLVPE
                     IALTPVFSRRLRAHFGDAVAIFHSSLTTGERFDEWGRLKRGEARVVIGTRSAVFAPVS
                     DLGIIVVDEEHEASYRQQESPYYNGRDTAVMRALKERAVVVLGSATPSLESFQNARAG
                     KYGYLRLPSRIAGRAMARAEIVDMRDVFRSAGRPEVFSPELLAAIEETHARGEQSIVL
                     LNRRGYSSFVLCRSCGERINCANCDVTLTYHRSEHSLICHYCNLRQRTPTECPACKGQ
                     FIYFIGEGTEQVEEILRARFPALRIARLDRDTTARRSTYEQAILRFAAGELDMLVGTQ
                     MIAKGHDFPNVTLVGVVSVDAGLALPDFRAAERAFQLITQVAGRAGRGDLPGRVLIQT
                     YHPSHYALRHACEQDYDAFFDEEINYRRNLSYPPFVALASLLVRGEDLTRVQATAAEI
                     RRALDDANADRQVRVLGPAPAPLARLRGEHRVQILIKSRNRPRLRGVVEMALADAART
                     PGCDTASVNVEIDPVNLM"
     gene            complement(3586..>3792)
                     /locus_tag="VD968_12940"
     CDS             complement(3586..>3792)
                     /locus_tag="VD968_12940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15346.1"
                     /translation="ISFGNTPTRALLRTKKPISQLRGEFHDYDGVPLMPTFNPAYLLR
                     DPTKKREVWEDMKKIRALLSSPQK"
BASE COUNT          542 a         1193 c         1440 g          617 t
ORIGIN      
        1 gcgtatcgtg cgctgcattt cgccgaggcg gcggaaggca gcggtcgagc gcagccactc
       61 gcggttgtcg aaggcaggta tgccggagag cacacggccg ggcggaatgt cgtggctggt
      121 ggcgctcttg gcggtgatga cgacgtcgtc gccgattcgc aggtggcccg cgacgccgac
      181 ttggccggcg agtatgacgc ggctgccgac gtgcgagctg ccggctaatc ccacctgcgc
      241 gcacaggagc gagtcttcgc cgaccgtgca cgagtggcct atctgcacga ggttgtctat
      301 tttcgtgccg cgcgcgatgc gcgtctcgcc gaccgaggcg cagtcaatcg tggcgcacgc
      361 tcctatctcc acgtcgtcct ctatacagac gcggccggtt tgcgggattt tcagccagct
      421 gccctcctcg tctttagcgt agccgaagcc gtcggagccg acgacggcgt tgttgtgtat
      481 tcgcacgcgc gcgccaacct gcgtgccttc gcggagggcc acgccggagt ggaggactga
      541 gtcgtcgcct acgcgggcgc cgtcgtagat ggtcacattc gggtgtatga ggacgcgtcg
      601 gccgatctcg acgccgcggc ctatgacgga gcaggcgccg acgtgcgtgc cttcgccgag
      661 ccgcgcggtc gggtcaacga ccgccgaggg gtggacgaag ggctcgaact ccggctcggg
      721 gtggaaggtg cggagggcgc gggtgtatgc gaggtagggg tcgcgtgcgc gcagcgcggc
      781 gatgtcgccg cggccgacct cgacgccctc gccgacgtag atggcggagg cgcgcgtcgt
      841 ctgcacgcgc ggcgtgtagc ggggattggc gaggaaggtc acatggccgg gctcggcctc
      901 gtcgaggccg gcggcccccg taatctcgac ctcggcgaag tcgccctgga cggtcgcgcc
      961 ggtcagtcgc gcaagctctg agagtttcat gacggcaagt ttacattaag ttgacggggt
     1021 ctatctcgac gttgaccgaa gccgtgtcgc agccgggcgt gcgcgcggcg tcggcgagcg
     1081 ccatctcgac gacgccgcgc aggcgggggc ggttgcggga cttaatgaga atctgcacgc
     1141 ggtgctcgcc gcgcaggcgc gcgagcgggg cgggcgcggg gccgaggacg cgcacctgac
     1201 ggtcggcgtt ggcgtcgtcg agggctcggc ggatttcggc ggccgtggcc tgcacgcgcg
     1261 tcaagtcctc gccgcgcacg agcagcgagg cgagcgcgac gaagggcggg tagctcaagt
     1321 tgcggcggta gttaatctcc tcgtcgaaga aggcgtcgta gtcctgctcg caggcgtggc
     1381 gcagagcgta gtggctcggg tggtaagtct gtatgagcac gcggccgggc aagtcgccgc
     1441 ggccggcacg ccccgcgacc tgcgtgatga gttggaaggc acgctcggct gcgcggaagt
     1501 caggcagggc gagccctgcg tcaacagaga ctacgccgac gagcgtgacg ttcgggaagt
     1561 cgtggccctt ggctatcatc tgcgtgccga cgagcatgtc gagctcgccc gcggcgaagc
     1621 gcagaatcgc ctgctcgtag gtgcttcggc gcgccgtcgt gtcgcggtcg aggcgcgcga
     1681 tgcgcagggc ggggaagcgg gcgcgcagga tttcttcgac ctgctctgtg ccttcgccga
     1741 tgaagtatat gaactgcccc ttgcacgcgg ggcattcggt gggcgtgcgc tggcggaggt
     1801 tgcagtagtg gcagatgagg ctgtgctcgc tgcggtggta tgtgagcgtc acgtcgcagt
     1861 tggcgcagtt gatgcgctcg ccgcaggagc ggcagaggac gaagctcgaa tagccgcggc
     1921 ggttgaggag cacgattgac tgctcgccgc gcgcgtgcgt ctcctcgatg gccgccagta
     1981 actccggcga gaagacctcg ggcctgcccg cggagcggaa cacgtcgcgc atgtcaacaa
     2041 tctctgctcg ggccatcgcg cggccggcga tgcggctggg caggcggagg tagccgtact
     2101 tgcccgcgcg ggcgttctgg aacgattcga gcgagggcgt ggccgagccg agcacgacga
     2161 cggcgcgctc cttgagggcg cgcatgactg cggtgtcgcg gccgttgtag tagggcgact
     2221 cctgctgccg gtatgaagcc tcgtgctcct cgtcaacgac gattatgccg aggtcggaga
     2281 cgggcgcgaa gacggccgag cgcgtgccga tgacgacgcg cgcctcgccg cgcttcaggc
     2341 gcccccactc gtcgaagcgc tcgcccgtgg tgagcgacga gtggaagatt gcgacggcgt
     2401 caccgaagtg cgcgcgcagg cggcgcgaga agacgggcgt caacgctatt tcggggacga
     2461 gcatcatggc cgtgcggccc cggcgcagcg cctctcgcat ggcgcgtatg tagatttctg
     2521 tcttgccgct ccccgtgacg ccgtgcagta ggaaggccgc gtagccgccg cgcgcctgcg
     2581 cgtcgtttat ctcgcgcagc gccgcggcct gcgcttcggt caggtggaac tcgtcacggt
     2641 cggggagctg tgcgccggcg agcgggtcgc ggcggacttc gcgcacgaag acttcgagga
     2701 ggcggcgacg ctccaacgtc tgtatggtcg cggcgctcgc ctgcgcggct tcaagcagct
     2761 cggcaaagag catctcgccg cccgcgccga cgagcgcccc gacgacgcgc tgctgggcgg
     2821 ccgtcagagg gcgcgagccg ttcgtctcag cgccgtccgg cggcaggagt cggacggcct
     2881 tgcgccgctt cggcttggcc tgcgcgccgc gtgcccggtg cgagagcgtg acccaccccg
     2941 aacgctgcaa ctcgcgggcg gccttcgcgg cgcgggcctg ccccaactcg cgcgcggcct
     3001 cgcgaagtgt tgtcgagccg tcggccgaag ccaggcgaag gacgtgcgcg cgcgcggtcg
     3061 tcgcgcgccg cgccggaagg cgcgcaagct cgtcgcggcc ctcctgcgtg atggtgatga
     3121 cctgctcaat cgtcgagtta atgccggccg gcagcgcggc cttcagcacc tcgccccacg
     3181 gcgcggcgta gtactcgctt atccagcgcg taatctccaa gacctcgggc gtgatgagag
     3241 gctccgcgtc gagcagctct tcggcgtctt tcagccccga gtcttctatc tctgtcgccg
     3301 ggtcgagcgc gtcgtgcagc gcgacgacgt agccggtcgc gagcgtccgc ccgaagggga
     3361 cgagcacgcg cgcgccgact cgcgccgcct cgcgcagcgc gagcggcagg cggtaggtgt
     3421 aggtctgcgc gagccgaagc gggagcgcca cttcggcgta gagcggctcg ggcgaggccc
     3481 cgaccgcgcc gcgcgagcct gaagctgttc gtggggtggg cggagggctt tgcacgggga
     3541 gctaagttaa cttgaagcgg cggaaagttg aagcggcggc ccggcctact tctgcggcga
     3601 cgaaagcagc gcgcggattt ttttcatgtc ctcccagacc tcgcgcttct tcgtggggtc
     3661 gcgcaggagg taggcggggt tgaaggtcgg catgagcggc acgccgtcgt agtcgtggaa
     3721 ctcgccgcgt agctgcgaga tgggcttctt cgtgcgcaga agggcgcgcg tcggcgtgtt
     3781 gccgaaggag at
//
LOCUS       DASPKR010000485         3358 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1106376, whole genome shotgun sequence.
ACCESSION   DASPKR010000485 DASPKR010000000
VERSION     DASPKR010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3358)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3358
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1106376"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..492)
                     /locus_tag="VD968_12945"
     CDS             complement(<1..492)
                     /locus_tag="VD968_12945"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE15347.1"
                     /translation="MPVISDDESGAVTAWLPDLLFVGGRFERGAALVCNARGRVEAVL
                     PRGLLRAVTGGEPREGETYDLALSDRYFTARFRRLRGRAVLPGMANAHSHAFQRVIRG
                     RTERRAGPGRDSFWTWREMMYRAAERLTPEDLYDASRMAFMEMALCGITAVGEFHYLH
                     RSPE"
     gene            complement(513..2333)
                     /locus_tag="VD968_12950"
     CDS             complement(513..2333)
                     /locus_tag="VD968_12950"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HYE15348.1"
                     /translation="MRLEGKRLFLPLLAAALLAQAATTAPARQRGRAAAGQQRSGAAA
                     ALHKLFDDEWEWTMREFPTFASSLGDRRYNDRWEDASLEAVERRHRHRQEALRRLRSI
                     DRSKLSAADQLNYDLFAKDLENDIEEHKFRMYLLPVHQRDGIQAADELAERLRFQTVK
                     DYEDWIARLRSFPRYMEQTIGLMREGVREKMLWPKEVIKRVGGQVDKQIVSRPEQSPF
                     YKPFLEFPEALAAADRERLAREGAEAVSQQIIPAFRQFKEFFEREYLPASLDRVGAWQ
                     WPRGDEAYAFLARRYTTTSLTPQQIHEKGLAEVARLRDEMQKVMTQVGFNGTHKEFFK
                     KLRTDDRFYYKTPAELLEAYRAMSKRIDPNLVKVFKTIPRMPYGVIPIPEKSAPDTTT
                     AYYNQPAADGSRPGYYYVNLYKPETRPKYEMMALSLHEAVPGHHFQIARAMELGEIPK
                     FRRYGGYTAFVEGWGLYAESLGEDMGLYDDPYSKFGQLTYEMWRAVRLVVDTGMHHMK
                     WDRQRAIDYFLDNAAKTEQDIVNEIDRYITNPGQALAYKIGELKIKELRARASAALGP
                     SFDVREFHEVVLGSGAVPLDVLERNVDEWIGSQKAEGRPR"
     gene            2472..>3358
                     /locus_tag="VD968_12955"
     CDS             2472..>3358
                     /locus_tag="VD968_12955"
                     /inference="COORDINATES: protein motif:HMM:NF024874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE15349.1"
                     /translation="MSVSVKDLKTYTSFARRFAGRFVAERAREAREPMLPAPHRPEPA
                     GWSDERLTVAWLGHATVLMNFYGTWLLTDPALRPRVGLRVGAVTLGPRRLVRPALKAR
                     ELPALDAVLVSHAHMDHCDLGTLGSLPRSTRAVVQKGMGDLVRRFSRVDELGWGESAE
                     VGGARVEAIEVNHWGARTLTDRHRGYGGFLIEKRGRAVVFGGDTAYTRAFARLRDRGK
                     RVDLAILPIGAYDPYIYAHASPEQAWAMAREMGAEFILPMHHSTFRLSREPVGEPAER
                     MLRAAVRERHRVALTEIGQT"
BASE COUNT          508 a         1067 c         1197 g          586 t
ORIGIN      
        1 ctcgggcgag cggtgcaggt agtggaactc gcccacggcc gtgatgccgc agagcgccat
       61 ttccatgaaa gccatgcgcg aggcgtcgta gaggtcttcg ggcgtgagtc gctcggccgc
      121 acggtacatc atctcgcgcc aggtccagaa agagtctcgg cccgggccgg cgcggcgctc
      181 cgtgcggccg cgtatgacgc gctgaaaggc gtgcgagtgc gcgttcgcca ttccggggag
      241 cacggcgcgg cctcggagcc ttcggaagcg cgccgtgaag taacggtcgg agagcgcgag
      301 gtcgtaggtc tcgccctcgc gcggctcgcc gcccgtcacc gcgcgcagaa ggccgcgcgg
      361 caacacagcc tcgacgcgcc cgcgcgcgtt acagacgagc gccgcgccgc gctcgaagcg
      421 cccgccgacg aacaggaggt ctggcagcca ggcggttacg gcgccactct cgtcgtcgct
      481 gatgacgggc atgctgtctc gactctccct gcttaccggg ggcggccttc ggccttctgc
      541 gaccctatcc actcgtcaac gttgcgttcg agcacgtcga gcgggactgc gccggagccg
      601 agcacaacct cgtggaactc tcgcacgtcg aacgacgggc cgagcgcggc ggaggcgcgc
      661 gcccgcagct cctttatctt cagctcgcct atcttgtagg cgagcgcctg gccggggttg
      721 gtgatgtagc ggtctatctc gttgacgatg tcctgctcgg tcttggcggc gttgtcgagg
      781 aagtagtcaa tcgcgcgctg cctgtcccac ttcatgtggt gcatgcccgt gtcaacgacc
      841 aggcggacgg cgcgccacat ctcgtaggtg agctggccga acttagagta ggggtcgtcg
      901 tagaggccca tgtcctcgcc gagtgattcg gcgtagaggc cccagccctc gacgaaggcc
      961 gtgtagccgc cgtagcggcg gaatttcggt atctcgccca gttccatcgc gcgagcgatt
     1021 tgaaagtggt ggccggggac ggcctcgtgg agggagaggg ccatcatctc gtacttgggg
     1081 cgcgtctcgg gcttgtagag gttgacgtag tagtagccgg ggcgcgagcc gtcggccgcc
     1141 ggctggttgt agtaggccgt cgtcgtgtcg ggcgcgctct tctcggggat ggggatgacg
     1201 ccgtagggca tgcgcgggat ggtcttgaag accttgacga ggttcgggtc tatgcgcttc
     1261 gacatggcgc ggtaggcttc cagaagctcg gcgggcgtct tgtagtagaa gcggtcgtcc
     1321 gtccgcagct tcttgaagaa ctccttgtgc gtaccattaa agccgacctg cgtcatgacc
     1381 ttctgcatct cgtcgcgcag gcgcgcgacc tccgccaagc ccttctcgtg aatctgctgc
     1441 ggcgtcaaag aggtcgtcgt gtagcggcgc gcgaggaagg cgtaggcctc atcgcctcgc
     1501 ggccactgcc aggcgcccac tcggtctaac gaggcgggca ggtactcgcg ctcgaagaac
     1561 tccttgaact gccggaaggc cgggattatc tgttgcgaga cggcctcggc gccctcgcgg
     1621 gcgaggcgct cgcggtcggc ggcggcgagc gcctcgggga attcgaggaa gggcttgtag
     1681 aaggggctct gctcggggcg cgagactatc tgcttgtcaa cctgcccgcc aacgcgcttg
     1741 atgacctcct tcggccagag catcttctcg cgcacgccct cgcgcatgag cccgatggtc
     1801 tgctccatgt agcgggggaa tgagcgcagg cgagctatcc agtcctcgta gtccttcacg
     1861 gtctggaagc gcaggcgctc ggccaactcg tccgccgcct gtatgccgtc gcgctggtgg
     1921 acgggcagga ggtacatccg aaacttgtgc tcttcgatgt cgttctctaa gtctttggcg
     1981 aagaggtcgt agttgagctg gtcggccgcg gagagcttcg agcggtctat ggagcggagg
     2041 cggcggagcg cctcctgccg gtgtcggtgc ctgcgctcta ctgcttcgag gctcgcgtcc
     2101 tcccagcggt cgttgtagcg gcggtcgccg agcgatgagg cgaacgtcgg gaactctcgc
     2161 atcgtccact cccactcgtc gtcgaagagc ttgtggaggg ccgctgcggc gcccgagcgc
     2221 tgttgcccgg cggccgcgcg gcccctctgg cgtgccggcg cggtcgtcgc ggcctgcgcg
     2281 agcagtgccg ccgcgagcag gggcagaaac aggcgcttgc cttcgaggcg cataaaggtc
     2341 ttgtcctccg gtttcggggt tgcggaatga agtttcctag agacgtgcgg aaggatacaa
     2401 cactagacgg agggacggga agttctgact cccgacttcc ttttcacccg ccggggcatc
     2461 taagccgcat gatgagcgtt tcggtaaaag acctgaagac ctatacgagt ttcgcgcgcc
     2521 gcttcgcggg gcggttcgtg gccgagcgcg cgagggaggc gcgcgagccc atgctcccgg
     2581 cgccgcacag gcccgagccc gcgggctgga gcgacgagcg gcttacggtc gcctggctcg
     2641 gccacgcgac tgtgttgatg aatttctacg ggacgtggct tctgacagac ccggcgctgc
     2701 gcccgcgggt agggctccgc gtgggcgccg tgacgctcgg gccgcggcgg ctggtgcgcc
     2761 cggcgcttaa ggcgagggaa ctgcccgcgc tcgacgccgt cctcgtctcg cacgcgcaca
     2821 tggatcactg cgacctgggg acgctcggga gtctgccgcg gagcacgcgc gccgtcgtgc
     2881 agaagggcat gggcgaccta gtgcgccgct tctcgcgcgt ggacgagctg ggctggggag
     2941 agtcggccga agtcggcggc gcgcgcgtcg aggcgattga ggttaaccac tggggggcgc
     3001 gcacgctcac cgacaggcac cgcggctacg gcggcttcct catagagaag cgcgggcgcg
     3061 ccgtcgtctt cggcggcgac acggcctaca cacgcgcctt cgcgcgcctg cgagataggg
     3121 gcaagcgcgt tgacctggcg atcctgccca taggcgccta cgacccttac atctacgcgc
     3181 acgcgagccc cgaacaggcg tgggccatgg cgcgcgagat gggcgcagag ttcatactgc
     3241 ccatgcacca ctccacattc aggctgagcc gcgagcctgt cggcgagccc gccgagagaa
     3301 tgctcagggc ggccgtgcgc gaacgacacc gcgtcgccct gacggagata ggccagac
//
LOCUS       DASPKR010000486         2325 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1623717, whole genome shotgun sequence.
ACCESSION   DASPKR010000486 DASPKR010000000
VERSION     DASPKR010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2325)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1623717"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VD968_12960"
     CDS             <1..180
                     /locus_tag="VD968_12960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15350.1"
                     /translation="AVAAFEPDTGRVVLSVASPSGHTYRVRRPPGSALSLDGPIPVLG
                     EGTWRAAFARYDLRW"
     gene            complement(194..913)
                     /locus_tag="VD968_12965"
     CDS             complement(194..913)
                     /locus_tag="VD968_12965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15351.1"
                     /translation="MAVSAKVLRRPSDRSLFLAAAILFPLVVLAGYFKSYYFSAFFDV
                     RPVANMLVHAHGVVMTLWVAYFSTQIALIRTKNVRLHMTMGMAGVALAALVVVVGTAT
                     AYDAQLVRGSAPPGENPHSFFLLPMLDMFLFVVFFAGAIYYRKRPAEHKTLMLMTAIN
                     FMPAALFRIPVVPPQLAIHWAFGVPMLVALACLGWHTAKHGRLNKVFAAAVLILVAAH
                     PLRLMLGGSEIWLRFTAWLAP"
     gene            1067..>2325
                     /locus_tag="VD968_12970"
     CDS             1067..>2325
                     /locus_tag="VD968_12970"
                     /inference="COORDINATES: protein motif:HMM:NF036484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15352.1"
                     /translation="MSQDAITVRGARVNNLKNVSFSIPVEKLTVVTGVSGSGKSSLAF
                     DTIYAEGQRRYVESLSAYARQFLERMDKPDVDEVLGIPPAIAIRQKNSTRNPRSTVGT
                     QTEIYDYLRLLYARVGITFCRVCGREVRKDSPESSAQDVLEALPEGARFYVLFPAEAG
                     LRREENGDNAAAPKGRKKAKTAAAPSGAYDRRTVTAHVMSLMQRGFTRLLAGGETIEL
                     RSPDDYTREGFEGVYVLVDRLVARSDVRERLVDSFETCFIEGHGQAVVQTAEAEPRTL
                     RFNERFECKYDGTIYAQPEPRLFSFNSPFGACPTCQGFGNTIGLDLDLVIPNPQLSLA
                     EGAIEPWTKPQHDWARTELKRFCRQERIPMDVPFQELSRQQQRAVVEGKNGWGGVRGF
                     FEWLETKKYKLHVRVFLSKYRGYTLCP"
BASE COUNT          415 a          808 c          745 g          357 t
ORIGIN      
        1 gcggtcgcgg ccttcgagcc cgacacgggc cgcgtagtcc tctccgtcgc ctccccctcc
       61 ggccacacat accgcgtgcg ccgcccgccc ggctcagccc tctcgcttga cggccccatc
      121 cccgtcctcg gcgaaggcac ctggcgcgcc gccttcgccc gctacgacct gcgctggtga
      181 gggcgcggcc cgcttacggc gcgagccacg ccgtaaaccg cagccagatt tccgagccgc
      241 ctaacatgag ccgcagcggg tgcgcggcga cgagtatcag gacggcggcg gcgaacactt
      301 tgttgagccg cccgtgcttc gccgtgtgcc agccgaggca ggcgagcgcg acgagcatcg
      361 ggacgccgaa cgcccagtgg atggctagct gcggcggcac gacgggtatt cggaacagcg
      421 ccgccggcat gaagttgata gccgtcatca acatcagcgt cttatgctcg gccggccgct
      481 tgcggtagta gatcgccccc gcgaagaaga ccacgaacag gaacatgtcc agcatgggga
      541 gcaggaagaa cgagtgcggg ttctcgcccg gcggcgccga cccgcgcact agctgcgcgt
      601 cgtaggccgt agccgtcccg accacgacga ccagcgccgc cagcgcgacg ccggccatcc
      661 ccatggtcat gtgcagcctt acgttcttcg tgcgtatgag cgcgatctgc gtggagaagt
      721 acgcgaccca cagcgtcatc accacgccgt gcgcgtgcac gagcatgttg gcgaccggcc
      781 tgacgtcgaa gaaggcgctg aagtagtaag acttgaagta cccggcgagg acgacgagcg
      841 ggaaaagaat tgccgcggca aggaacaggc ttctatccga cgggcgacgc aacaccttcg
      901 cgctgactgc cataagactt cacctcccac cctgaacgcg gaagaccgtg ggaaatcgaa
      961 tcaccctggc gcggcgcgtt tcacgttcga aacagtttcg ggttatcatt ccgggttcgc
     1021 ccgcgggccg gatagctcac tgtgcggccg ggcgagccta tttaacatga gccaagacgc
     1081 tataaccgtg cgcggggcgc gcgtgaataa tcttaagaac gtctccttct cgatccccgt
     1141 ggagaagctg acggtggtga cgggcgtctc ggggtcgggt aagtcgtcgc tggccttcga
     1201 caccatctac gccgaggggc agcgccgcta cgtcgagagc ctttcggcct acgcccgaca
     1261 gttcctcgag cgtatggaca agccggacgt ggacgaggtc ttaggtattc cgccggccat
     1321 agccatccgg cagaagaact cgacgcgcaa cccgcgctcg accgtcggca cgcagacgga
     1381 aatctacgac tacctgcgcc tgctctacgc gcgcgtcggt ataacattct gccgcgtctg
     1441 cggccgcgaa gtccgcaagg actcgcccga gtcctccgcc caggacgtgc tcgaagcgct
     1501 cccggaaggc gcgcgcttct acgtcctctt ccccgccgag gcggggcttc gccgtgagga
     1561 gaacggcgac aacgccgcgg cgccgaaggg caggaagaag gcgaagaccg ccgccgcgcc
     1621 ctccggcgcc tacgaccgcc gcaccgtcac cgcccacgtg atgagcctca tgcagcgcgg
     1681 cttcacgcgc ctgctcgcgg gcggcgagac gattgaattg cgctcgcccg acgactacac
     1741 gcgcgagggc ttcgagggcg tctatgttct ggttgaccgc ctcgtcgcgc gctcggacgt
     1801 gcgcgagcgc ctggttgact ccttcgagac ctgcttcata gagggccacg ggcaggcagt
     1861 cgtgcagacg gccgaggccg agccgcgcac ccttcgcttc aacgagcggt tcgagtgcaa
     1921 gtacgacggg acaatctacg cgcagccgga gccgcgcctc ttcagcttca acagcccgtt
     1981 cggcgcctgc ccgacctgcc agggcttcgg caacaccatc ggcctcgacc tcgacctcgt
     2041 catcccgaac ccgcagctct cgctcgccga gggcgctatc gagccgtgga cgaagccgca
     2101 gcacgactgg gcgcgcacgg agctgaagcg cttctgccgg caggagcgca tccccatgga
     2161 cgtgccgttc caggagcttt ccaggcagca gcagcgcgcc gtcgtcgagg gcaagaacgg
     2221 ctggggcggc gtgcgcggct tcttcgagtg gctggagacg aagaagtaca agctgcacgt
     2281 ccgcgtcttc ctctccaaat accgcggcta cacgctctgc cccga
//
LOCUS       DASPKR010000487         4013 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1751503, whole genome shotgun sequence.
ACCESSION   DASPKR010000487 DASPKR010000000
VERSION     DASPKR010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4013)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4013
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1751503"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..250)
                     /locus_tag="VD968_12975"
     CDS             complement(<1..250)
                     /locus_tag="VD968_12975"
                     /inference="COORDINATES: protein motif:HMM:NF012588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15353.1"
                     /translation="MGDSTARTDKEEPLGLVPRLKGQGYAREDVERRRRWVEEKTACR
                     LAHVGSHSIPTEAMRGNVENPVGAAQVPLGVAGPLVVRG"
     gene            complement(265..1506)
                     /locus_tag="VD968_12980"
     CDS             complement(265..1506)
                     /locus_tag="VD968_12980"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-[acyl-carrier-protein] synthase
                     family protein"
                     /protein_id="HYE15354.1"
                     /translation="MTRRVVVTGAGLVSPLGDSPAALHAALREGRGCVREVELPGVES
                     SRCGLAGALHDFDAQSYLGKRNLRPLDRVGRLAASAAQLALDAGRWPPEARREREVGL
                     VLGTMFGSVGTTFEFDRSALEAGAAYVSPMDFANTVINAAAGQAAVVHDLRGVNSTVS
                     AGAASGLQAIAYAADLIREGRARALLAGGAEALCPETFYGFDRAGMLCGSGDDEGCRP
                     VPFDARRNGFALSEGAALLMLEDEESARGRGARVLAEVRGHAAAFDPSRGTGEEDSIG
                     AVTRAMRLALEDAAVSADEVDCLSASANGSVSGDRREALAAARVFGARASELPVTAIK
                     SALGEALGASGALQAVAALESIREGVVPGARNFERAEGGFPLGSVGPAPRAVNVRNAL
                     VNSIGFDGHCCALVMSRPGLL"
     gene            complement(1503..2723)
                     /locus_tag="VD968_12985"
     CDS             complement(1503..2723)
                     /locus_tag="VD968_12985"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF005589.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-[acyl-carrier-protein] synthase
                     family protein"
                     /protein_id="HYE15355.1"
                     /translation="MRARVVITGIGWVTPLGAGRDRVWGALLAGRSAVSPVESFDPSP
                     YGVSLGAEVKDFRAEDYMPAALASSAGRATQMALASALMAVEDAGVEPGGFEPERAGV
                     SLGTTSGEPLEVERLNDLRASGEDGPPEFASRYPCHQIASNVAAALGLAGVNLMTASA
                     CAAGNHAIAFAADALRAGRSDLMLAGGADAFSRIIYAGFARLGALAPERCQPFDRNRR
                     GLIPGEGACVLVLETLERAARRGARIYAEVAGYGLTCDAHHMTAGHPGGEGAARAMAD
                     ALGESGLRPEEVDYISAHGTGTPTNDRLETIAVKRVFGGAADRLAISSVKSMIGHTMG
                     AASAVEAAVCALAICEGRVPPTINLEEPDAECDLDYVPNLAREMRVDVAMSNAYAFGG
                     NNSSLVLKKCGVDA"
     gene            complement(2693..2974)
                     /locus_tag="VD968_12990"
     CDS             complement(2693..2974)
                     /locus_tag="VD968_12990"
                     /inference="COORDINATES: protein motif:HMM:NF012759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000036 - acyl carrier activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HYE15356.1"
                     /translation="MTTDNIRDEVKRAVSATAGIKAEDVPDHAAYREDLQLDSLTILE
                     ISVSLEHRFLIKIPDEELSSIRTIDDTVQAIRRHSESRTPCGPESSSQA"
     gene            complement(3115..3642)
                     /locus_tag="VD968_12995"
     CDS             complement(3115..3642)
                     /locus_tag="VD968_12995"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYE15357.1"
                     /translation="MRKLAIAMTAFLFLGFGALSVSHAQLRPNRPGVGPRRPVRPGVA
                     PPVQAKPQRDEEVLEALVREWANAVVHRDLDKLDRIQANDFKGSAQGKDFNKRMLREA
                     LQTRAMEVAAWTIEDVKVRVTGNTALVTGRSTLSNAKFMGQDYSGEYEWSDRFVRQRD
                     GTWRAVSSHAKLVKK"
     gene            3832..>4013
                     /locus_tag="VD968_13000"
     CDS             3832..>4013
                     /locus_tag="VD968_13000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15358.1"
                     /translation="MRLRACLLLALLLAASAPATVLTAPRPAPLTVEGSHKVSAAYGW
                     LDVALEATAREHERHAP"
BASE COUNT          576 a         1408 c         1419 g          610 t
ORIGIN      
        1 cgccgcggac gacgagcggc ccggccacgc cgagaggcac ctgcgccgcg cccacagggt
       61 tctcgacgtt gccgcgcatc gcctcggtcg gtatcgagtg cgagccgacg tgcgcgaggc
      121 ggcaggcggt cttctcctcg acccaccggc ggcggcgctc cacgtcctcg cgcgcgtagc
      181 cctgcccttt gagccgcggc acgagcccga ggggctcttc cttgtccgtg cgggccgtcg
      241 aatcgcccat aggatattcg ccctctagag taggccgggg cgcgacatga cgagcgcgca
      301 gcagtggccg tcgaagccaa ttgagttgac gagggcgttc cgcacgttaa cggcgcgggg
      361 cgcggggccg accgagccga gcgggaagcc gccctccgcc cgctcgaagt tgcgggcgcc
      421 cgggacgacg ccttcgcgaa tgctttccaa cgccgcgacc gcctgaagcg cgcccgacgc
      481 gccgagcgcc tcaccgagcg cggactttat ggccgtgacg gggagctcac tggcgcgggc
      541 gccgaagact ctggcggcgg cgagcgcctc gcgccggtcg ccgctcacgc tcccgttggc
      601 cgaagcgctc aggcagtcaa cctcgtctgc gctcacggcg gcgtcttcga gcgccagccg
      661 catcgcgcgc gtgaccgccc cgattgagtc ttcctcgccc gtcccgcgcg aagggtcgaa
      721 cgcggctgcg tggcctctga cttccgcgag cacgcgcgcg ccgcgcccgc gcgcagactc
      781 ttcgtcttcg agcatgagga gcgcggcgcc ctcggagaga gcgaacccgt ttcgccgcgc
      841 gtcgaagggg acggggcggc agccctcgtc gtcgcccgag ccgcagagca tccccgcgcg
      901 gtcgaaaccg tagaaggtct cggggcaaag cgcctcggcg ccgccggcga gcagtgcgcg
      961 cgctcggccc tcgcggatga ggtctgcggc gtaggctatg gcctgaagcc ccgaagcagc
     1021 gccggccgag acggtggagt tcacgccgcg aaggtcgtgc acgacggccg cctggcccgc
     1081 ggccgcgttg atgacagtgt tggcgaagtc catggggctc acgtaggccg cgcctgcttc
     1141 gagcgcgctg cggtcgaact cgaaggtggt gccgacgctg ccgaacatcg tcccgagcac
     1201 gagcccgacc tcgcgctcgc gcctggcctc gggcggccag cggccggcgt cgagcgcgag
     1261 ctgagccgcc gaggcagcga gcctgcccac gcgatcgagc gggcgcaggt tccttttgcc
     1321 gaggtaactc tgcgcgtcga aatcgtggag tgcgcccgcg agcccgcagc gcgacgactc
     1381 gacgccgggc agttcgacct ctcttacgca gccgcggccc tcgcggagcg ccgcgtggag
     1441 cgcggcgggc gagtcgccga gcggagagac cagcccggcg ccagttacta cgacgcggcg
     1501 cgtcacgcat ccaccccgca cttcttcagg acgagcgaag agttgttgcc gccgaaggcg
     1561 taggcgttgc tcatcgccac gtcaacgcgc atctcgcgcg cgaggttcgg cacgtagtcg
     1621 aggtcgcact cggcgtcggg ctcttcgagg ttgatggtag gcgggacgcg cccctcgcat
     1681 atcgcgagcg cgcacaccgc ggcttcgacg gcggaggccg cgcccatcgt gtggccgatc
     1741 atggacttga cggagctgat ggcgagcctg tccgcggcgc cgccgaagac gcgcttgacg
     1801 gcgatggtct caagccggtc gttcgtggga gtgcccgtgc cgtgggcgct tatgtagtca
     1861 acctcctccg ggcgcaggcc cgactctccg agcgcgtcgg ccatcgcgcg cgcggcgccc
     1921 tcgccaccgg ggtggcccgc agtcatgtgg tgcgcgtcgc aggtcaggcc gtaaccggcg
     1981 acctccgcgt agatgcgcgc gcctctgcgg gcggctcgct caagagtttc gagcaccagc
     2041 acgcaggccc cctcgcccgg tatcagcccg cggcggtttc ggtcgaaggg ctggcagcgc
     2101 tcgggggcga gtgcgccgag gcgcgcgaag cccgcgtaga ttatgcgcga gaaggcgtcg
     2161 gcgccgcccg cgagcatgag gtctgagcgg cccgcgcgca gggcgtcggc cgcgaaggct
     2221 atggcgtggt tgccggcggc gcacgcgctc gccgtcatca ggttgacgcc cgcgagcccc
     2281 agcgcggccg cgacgttcga ggctatctgg tggcaagggt agcgcgacgc gaactcaggc
     2341 gggccatctt cgcctgaagc gcgcaggtcg ttgaggcgct cgacctcgag cggctcgccc
     2401 gaggtcgtcc ccaacgagac gcctgccctc tcaggctcga agcccccggg ctcgacacct
     2461 gcgtcctcca ccgccatcag cgcggaggcg agggccatct gcgtggcgcg ccccgcggag
     2521 gaggcgagcg cggccggcat gtagtcctcg gcgcggaagt ctttgacctc ggcgcctaaa
     2581 gagacgccgt aaggggacgg gtcgaaagac tcgacgggcg agaccgccga gcggcccgcg
     2641 agcagcgcgc cccagacgcg atctcgcccc gcgcccagag gcgttaccca gcctatgcct
     2701 gtgatgacga ctcgggcccg catggcgtgc ggctctcgga gtggcgccgg atggcctgta
     2761 ctgtgtcgtc tatcgtgcgg atagacgaga gctcctcgtc ggggattttg ataaggaagc
     2821 ggtgttcgag gcttacggag atttccagta tggtgagcga gtcaagttgc aggtcctctc
     2881 ggtaggccgc gtggtcgggc acgtcctcgg ctttaatgcc ggccgtcgcg gagacggccc
     2941 ttttgacttc atccctgatg ttgtcggtcg tcacggtcgg aggcccctgc gcggagattg
     3001 gtaaggcgcg ggccgcgagg ctccgcgcgg tctcaccgga ttgacggcgt gcgcgataac
     3061 gggagagtgt cggactgaaa aaccctcggc gggaggggtc ggcggctgcc ccttctattt
     3121 cttgacgagc ttcgcgtggg agctgacggc gcgccacgtc ccgtcccgct ggcggacgaa
     3181 cctgtccgac cactcgtact cgccgctgta gtcttggccc atgaacttgg cgttggacag
     3241 cgtgctgcgg ccggtgacga gggccgtgtt acctgtgacg cgcaccttca cgtcctcgat
     3301 agtccacgcg gccacctcca tcgccctcgt ctggagcgcc tcccgcagca tcctcttgtt
     3361 gaagtccttg ccctgcgcgc tgcccttgaa gtcgttcgcc tgtatccggt cgagcttgtc
     3421 caggtcgcgg tgcaccacgg cgttggccca ctcgcgcacc agcgcctcaa gcacctcttc
     3481 gtcgcgctgg ggcttggcct ggacgggcgg cgcgacgccg ggacggacgg ggcggcgcgg
     3541 gcccacgccg gggcggttcg gcctgagctg cgcgtgcgag acgctcaacg cgccgaagcc
     3601 gaggaaaaga aatgccgtca tcgcgatagc aagctttctc atcagagcac ctccgaaggg
     3661 tcgcggccgg ttggcagatt ttcatccata cccagaggta agtcaataat aaacatacgc
     3721 cgcgcggcgc gcggtgtata atgcgcgcga actgccagaa ccgcccgccc ggcggcgcgc
     3781 cacgagcgcc ctttttcagt cgaaccgaaa gcccctcgcg cccgaatgcg tatgagactc
     3841 cgcgcctgcc ttctgctcgc cctgctcctc gccgcaagcg cccccgcgac agtgttgacg
     3901 gccccgcgcc ccgcccctct aacggtcgag ggctcgcaca aggtgtctgc cgcctacggg
     3961 tggctcgacg tggccctgga ggcgacggcg cgcgagcacg agcgccacgc ccc
//
LOCUS       DASPKR010000488        24136 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_589867, whole genome shotgun sequence.
ACCESSION   DASPKR010000488 DASPKR010000000
VERSION     DASPKR010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 24136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24136)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24136
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_589867"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            54..2771
                     /locus_tag="VD968_13005"
     CDS             54..2771
                     /locus_tag="VD968_13005"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15359.1"
                     /translation="MFGMHRPRAARLRGVVAVALASFLLMQFTLPPTRTALADTGGDT
                     ILLNGPNATATEDFNTLANTAGTTHTTLPLGWYITETGGSARDNEAYSVGTGSATDGD
                     TYSFGPSGNTDRALGELTTGTLQSTFGAQFTNGTGKTINSLFISYTGEQWRVGGNHTT
                     IAERLNFSYSTDAGSLTGGTYTDFDALDFTPLITTGATASLDGNNSANRKIVSGAITG
                     LSIPNGATFWVRWQGVDATSGDDGLAVDDFSVAAGTPFSDDGMLTDDVSAAVSSPELD
                     DAAFSVAIQSTGRIVAGGYVEQFGEPSHKDFTLSRYNQDGTTDATFTSPSTNFGANPD
                     DRIYGIALEADDDIVAAGSSHAHGAGSSDAVVALYGANGGAHTGSAIFSTANDAGSVD
                     EEFYAVAIQPSDGKIVAVGTTNANGLYDFLIVRYDALLNLDTTFGDGDGVVTIDFNTA
                     STVEAARAVAIDSGGNIVVAGYTHSGTNFDFAVARLLGADGSPDPTFAGDGTIVTDFF
                     SRSDQAFGLALQADGKIVVGGSSVVDATPNKDFALARYETDGDLDATFDTDGLQTTDF
                     FGEADIIRSVVVQPDQKIAAAGQARIQRDHFALARYDTGGSLDTTFSADGMVTTPFAH
                     DKEDRAYGLALQDDGKLVAAGYAENPSSPFPVRDFALARYLPDGSPDADVGAAPARKP
                     DIVLTIDNLPNQVIGTNFTYRMTVTNKGPGAGTNVTLTDVMPAEVAGLSYLIAGGPAS
                     CFGSSAIAICDFGTLHPGQSTYVDITVVGHVARLVTNTASVTSNEGDFNNANNTASET
                     SRILGVSAVNLSPTTVVGGCQNPVGTVTLSGPAPAGGLNVTLTSANPAATVPATVFVP
                     AGSTVSDQFTVTTSSVGSTTAGQINARLGTPTASSSVGKKLTVTPGACI"
     gene            3034..4095
                     /locus_tag="VD968_13010"
     CDS             3034..4095
                     /locus_tag="VD968_13010"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HYE15360.1"
                     /translation="MPVRKVTPLLAAARAAALSLIAACAAAPALAQEQQPQPQQPAAT
                     SPEPAEAKPDAAAAANAYRIGTGDVLDIVVTTGSGRSSQLSAENLTVNENGVIQVFDG
                     TISASCLTADELAASLKTRYLKYKKEPLSVVVNVKEYRSQLVAVIGAVKAPGRFELRR
                     PIRLLELLALYANGPNEKSDGRIEIVHTRDATVCGAQGGGPAGEGARLVAASHSYDWE
                     DTRLGRDEANPYVRPGDVISLSEAPEAFVIGNVHNPMAIPLRDKVTLTTALAMAGGLM
                     ENTKASKIRIERRKPGSTSKDVLVADLNAIKKQQSEDVVLQPGDIVEVPTSTGGRIIS
                     RLLGAISPVATQATVRVIR"
     gene            4175..6652
                     /locus_tag="VD968_13015"
     CDS             4175..6652
                     /locus_tag="VD968_13015"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HYE15361.1"
                     /translation="MKDHNELITINGEGAAHDNGLDKASSLPPYLISRTMEPLEADEG
                     VHLRDYWMAARKRIWLVIGVTLVVTVLATIYMARKPDIYEAEARIQVNLENPNPALGA
                     SGKGGSSVIVSGYNDPTYFSTQLQILTGPGLLRRVAKTLDLEHNKNFLRAAQGAPNRS
                     TWRSVLRIFGFDTKKKSEEQAPEEAELPLTTSVAPAVAKEDLADAKRLAPYVKALQAG
                     LKVEPVKETRLSVRDTRLIDIAYRHTDPTTAAKIVNAISDTFTLANLEKKTETNTTTG
                     DYLQKRIAELQAQIRTDGERLSNYARNHQILSLDASQNTVVERLAGLNRQLLEAENAR
                     KEAEAAYRAALSPGAAEALASASLSQIQELDMKIGALRQQRAQLLIENTEDWPEVKNI
                     DSQIKALEKQIAETRQRASSTVTTNLKTRFDQALAREQALRQAFNEQRAATVTQNEAS
                     INYRLIQQELDTNKALLDGLMQRFRENDVVQAGTPNNIYVVDYAVAPDAPVAPRRLQG
                     IALAFALSLTFGIGLAFFLEYLDDTIRSMEDVERMLHLPTLAVIPQVGGLARRRLLPG
                     LKALKSANGNGNGNGLPPELLFNADARSGLAEAYRHLRTSVLLSTPGQPPQTLLVTSS
                     LPSEGKTTTAVNVAMSLAQTGADVLVIDADMRRPRLHSLFNVGNQEGLSTLLSRELSE
                     AEVMAVLKRDEASGLYLMTSGAVPPNPAELIGSQQMQQLMTILKARFGHIVIDSPPIA
                     SFTDGVLISLMTDGVLLVIHGGKSSRAVVRHARQQLKNVGAKVLGVVLNKVDHRTGDY
                     YYYYHYGYYSHYYSGSDGDGGGKELTA"
     gene            6766..8247
                     /locus_tag="VD968_13020"
     CDS             6766..8247
                     /locus_tag="VD968_13020"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HYE15362.1"
                     /translation="MSATKATATNAGAREFVLDTAVVAVAQLLLKLRGLIALPLIVKA
                     LGTAEYGVWAQTLALIDFAGSLLGANLYHPLVRFLAEKQADGRTIYGTLLAATVAASA
                     LGGAAIWASAEGLSRYLLSDAGYLWHVRAGAVLVLCYNVRLLNLNAYRATGRLKERSL
                     FELVSTFGQLAGVALLLWQGQTLLRVLVFMAAWEAAFAALLTWHVSTIVGWGAPSRRV
                     LSEALRYSLPLMPAVLSISLLDRGDRFVVGYYEGAEGVGVYSANYALAALLMLFQTPL
                     QMTLLPKVAALWATERAAAQRYISLSNKAFLTLAIPYVAAMPLVAPRLLESLGNSKIA
                     GAGGVLTLLVSAGVMMWGVSIMQSQVFYGARRTLPVGIVTGGAAALNLGLNFALVPLM
                     GISGAALATFVSFGAACAALYLLSRDIFGLDFYPAHLLKCAAAAVLMAGVLWALLAGA
                     GAPLIPAAAAGALAYFAALWLLRAFGAEEVSILRGLLRLPART"
     gene            8261..8491
                     /locus_tag="VD968_13025"
     CDS             8261..8491
                     /locus_tag="VD968_13025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15363.1"
                     /translation="MIAQVTKGEQRQIGADWDTTTAVSVVLIALVSVALLVALVVSRV
                     RDKAERKRRAREHYGRARGRRRRKSSGGNVRG"
     gene            8478..10034
                     /locus_tag="VD968_13030"
     CDS             8478..10034
                     /locus_tag="VD968_13030"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HYE15364.1"
                     /translation="MSEGSEKVAAGAESVTHRTLSGMFWMVSGSGLQAVLRIGVLVVL
                     ARLLDPQEFGVVAAALIVVDFLEIFSDFGMGPAVVQHRAPEERHIRTAFTVSLVLGCI
                     FAAVIWAAAPLAAAFFRIEALTPVMRAMSLVFPLDSLALVSASLLRRDLKFRKLAVIS
                     VRSYAVGYCVVGVGAALAGFGVWALVAANLSQTLLSSAQLLWARPHAKRLLFDRATLK
                     EMTYAGGGFSAAHLFNYAALKGDNAVVGRALGVAALGLYTRAYGLMSISVSVFGAALD
                     KVLFAAMSRVQDDPERLTAAFRRGLAGLSLLVLPMSAAMCVLAPELVRVLLGEKWSGV
                     TAPFQVLAAGMLFRNGYKLCSAVARARGAVYRNAWRQGAYAVMVLAGSLAGARWGLTG
                     VAAGVLAALGLHFAVMAKLALSLTQLGWREYLSAHVPALRLTLLLALELWFVVTLSRG
                     VGLAPAATLAAALLSAGATMVVLLRVSPRLALGGDGVWALERVIERAPGRAMLTWWLR
                     LGARDLPGAA"
     gene            10071..11051
                     /locus_tag="VD968_13035"
     CDS             10071..11051
                     /locus_tag="VD968_13035"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HYE15365.1"
                     /translation="MSQLDSHKGQDAAAAGPFFIVYKARSGSTHLAELLTAHPSIGIA
                     PESNLVLSLWEWSGGGRRRVETADDLREALDMLYAEPKFVTWEVGRGALEASLLPRLP
                     VGVGEVAMAAVNDYCAAKYPSSSVRGVKKGSYALHAPAVLGMFPGAKFISLVRDGRAI
                     YASSKRARHSDTGEPFETDPVRSALVWKRMVTALDRYRGEPFFLEIQYERLIAEPEET
                     LRRVLSFLGLPAGPAELEAMLRPREAAFVHKRYSYLHPHVGKAGQLSRIDGWREELPE
                     GEVREFERVAGQTLASKGYEPVSKPGAWDRLRASMLETRVAVGRRLRRKA"
     gene            11069..11860
                     /locus_tag="VD968_13040"
     CDS             11069..11860
                     /locus_tag="VD968_13040"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE15366.1"
                     /translation="MASAFTTAEGAEQAAGEERRIQEAEYGFPYHYLPTFEKGKFSQF
                     RNLRWGYEYLSYTRFVLSKLAERDFDSLLDVGCGDGRLLYEARRLFPRKTLVGVDYFE
                     PAVALARLLSPGVTYVRGDITDPALLGRRFDAATLVDVLEHVPPAFLPEFVAGVRQHV
                     EPGGRLVVTVPSTNQPLNRKHYQHFTLESLARTLEPHFRVTEHHFINRRSRRVRLIES
                     LLTNRLFILNERRLLRALYEDYERHALRAGERDCKRICVVCAPAG"
     gene            11915..12814
                     /locus_tag="VD968_13045"
     CDS             11915..12814
                     /locus_tag="VD968_13045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15367.1"
                     /translation="MQKVLTKGLMKLIGKNGGGRGPAERRLKSPNGNGAAAPVTAPPA
                     FAVGTGRCGTHFLRDLMEKDPGIAAYHHRSIDSDAFARYCAWNRLPVDMSPFYDARRA
                     WIDEVRSSGLLYFESEPYLSLSIVPLYERFGARFVFVVRRPEDVVNSLFVKGWYAEEF
                     YKADADLAPGYAPGLRGNHVFGRIVPNGEEFRRWSRLTRVGKLAWMWNALNVRTLEQL
                     REIPEEQSVTVKLEELGYDCYRRLHAFVGGRQSMSEQEFDRIRNSKPGKGRNHRTADV
                     WSERERREFEAETEEGRRLLGYE"
     gene            12837..13988
                     /locus_tag="VD968_13050"
     CDS             12837..13988
                     /locus_tag="VD968_13050"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYE15368.1"
                     /translation="MRIAFIYRGEFTKRSANRLSMVKNVAAARRLGHEVVLYIPRDGL
                     PAAESRAAIEKALAEYAGGEQFPVVRVPRPTLGGKLRRTFDLLAAARARAGSFDLVWS
                     REFHAADYAAALGLRAVLEHHHFPFSPRQSAILRRALGRKGFRGVAAISGAQRRMMIE
                     AGFPADRVVTVHSGVDLAQFEAARASQNGLRSGLAAPGEPLVVYAGSLYPGKGGEMIL
                     PVAERLRGVRFLCIGGRDFEVAEMRERVEARGLTNVTLSGHMPHPQVVAHLLAADVLI
                     APFTEGGQDISGKVIMPFASPIKLFEYMAAGRPLVTSDVGAIPEVIRDGENGLLVKPG
                     NVEGLVSAVTRLMGDRELSDRLAAAAHEDVKAYTWERRVERVLDFAFGG"
     gene            14017..14964
                     /locus_tag="VD968_13055"
     CDS             14017..14964
                     /locus_tag="VD968_13055"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HYE15369.1"
                     /translation="MLARTNGNWANTFIAGVPKGGTTALAAILAQHPEVFVPRKKEPR
                     YYYFKDEEISPSNKVNRNVITKAEHYAALYAGASEKVLVDASPSYYGSEKALSLIRQD
                     VPGARLILLLRDPVERTFSHFWFAVQRGYEPPGSKFEDIFTAGEVDAGGGYVRRRNYL
                     KSSVYVERLDALFKIFPRGQVYMTTSERFMFEQATVLSEICEFLEIGRYDFDLGVGEK
                     AKSGLPKSRLVHALTRNAQRVMKLAPGLIPRHVREGVDRAHNSNLVKPQMLPGTRRRL
                     VDYYRDSVSELARKHQVDVSHWRNFSGATREFQFNDDRV"
     gene            15035..16180
                     /locus_tag="VD968_13060"
     CDS             15035..16180
                     /locus_tag="VD968_13060"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYE15370.1"
                     /translation="MPVLFVVMQSGASANGGVESITQVLEQLRRVRPLVVTQSETAAT
                     RRWREAGCEVLVWPTPGRPSAASVLRFNYGVYRLLRSRGRPVLHCNDITSLWHAGFGA
                     RAAGSPIVFNIRSVKPPGQEYGWRWRMAGRLSDRRLALSAEMRDALARRLPLPSRAGG
                     QAEVEFIYSVVDPARLSPMPAGERALARRRMGIGPSCFAVGVVAAFHPRKRQLELIRE
                     AAPLLKAKVPHARLYFVGDFDPESDDYARRCAEAVRERGLEGSVTFVGYSEKVADWYG
                     VLDAVAVASKNEGLARCMIEAVACATPVVSFDVCSAREILEGHGCGFVVPQEGYGALV
                     EKLALLAGDEAARRELGERGARAARELFDPRRVAGLYEELYSSLYGR"
     gene            16185..17660
                     /locus_tag="VD968_13065"
     CDS             16185..17660
                     /locus_tag="VD968_13065"
                     /inference="COORDINATES: protein motif:HMM:TIGR04370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008755 - O antigen polymerase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen polymerase"
                     /protein_id="HYE15371.1"
                     /translation="MEALSRFRGPELYIPPAAVPARQRQKGYDSPFLHMHLLYRIGII
                     AVYALILLTIVLNVEISSRSPVFILLCIALVLNFAVVLLPIIFYKPSYGWFHPLVFNA
                     CMYLLFQFRSYATYWGGLSHHKALPTWSPEEILTLVVYAIALKSIATASYFFGFFFGP
                     SFKVPRLSFPVPNRVGLKAVVVVLVTLVVFYLYISGKGGLAAHLLSWQEGRHDAMAGD
                     GYWHLAIKFAAAATLLWFTLDRRAAYKPVFWLCAFVSILINFFATGSRSLAVFFVIAG
                     FLVWMLREKKVAPGRILIITFVVVSAVGLLGSYRQQIWRGETSLASTAQDSSVLDSFI
                     EGAVESGERSWSGNGLLPIIALVPHDVDFLYGSSYVSVLTLPIPRKLWEDKPGQIGGL
                     VGETFFRSPAGTPPGAIGEAYWNFHIPGVVLIFFIWGAFHKWLKDVYLAYAGKPAMIL
                     IYLNIMFTFDPTTPALVAGMLQLMPALVLFWLIGALRFGRS"
     gene            17671..18609
                     /locus_tag="VD968_13070"
     CDS             17671..18609
                     /locus_tag="VD968_13070"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase domain-containing protein"
                     /protein_id="HYE15372.1"
                     /translation="MLPNLVIAGAPKCGTSSLFKWLSDHPRACGSAVKETYYLLDPGH
                     PLLRFARSSYHEQGLEGYERLFPGCRPGEHDVVFEATTHYLYQRTALEVVAGLPTRPH
                     VAFVLRKPSERVYSSYQYTLNNLAKLDDRISFPRFVRLVKGEEDAGAPLDEVLGESAY
                     VLKNDIGYSRYVEHLRPWVERLGRGRAHVLLFEDMRRDPRAFMKDFAARLGLDPSFYD
                     SYSFPVRNETVRIKSRRLHRRARMFEGVLPGGAVRDFVRGLYLRAQSGGSGAPRKTEE
                     DLRALEELEREFQPFNRRLASELGVDISAWGAPAAR"
     gene            18606..21176
                     /locus_tag="VD968_13075"
     CDS             18606..21176
                     /locus_tag="VD968_13075"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE15373.1"
                     /translation="MTAEASTAARERETAGGAALRLRCTACGSPLAWGGPADAARPLE
                     CACGRSFPVVGGVPRFVSSEKYVASFGVEWKEFPRTQLDSANGTRISRYRFGLLAGVE
                     PEELRGKRVLEVGCGTGRFMDVLAEAGAEVWGVDLSLAVEVAAENLARHARARVVQAD
                     LFRMPFGEDEFDFVYSFGVIHHTPDPRAAVAAMARHLRPGGRLAVWVYGRGVSSGIRG
                     RWVPRPHKVYGALAKRLPPRARARALSAYTRLALAAGSAPVVGAALRHVLPVQDLRRR
                     GPLQDGYDPDGGRAGEELRLEWARHSAFDMFTPTYVTQHDFEEAAGWAHSAGLTAVER
                     GPVPTTVRATKPRATPYRQGGDKLHVLFFVSRLNGGGAEMHMLRVMNHLDRSRFRVSL
                     AVTRPAGSFESALAEDVRMHVLGTGGSDSTTVRMLRAVGPLRRLMSEERPDVVCSVME
                     LANIVNVRAARGAEPRPRVVLGVQTPPSIALRYKFHPVNALALKLVPRVYPQADRVVA
                     LSRGVAEDVASLAPGVRGRVSVIYNAGVEDGVTEKAREPLGEHERDGTGPLVVACGRL
                     KSLKGFNYLIDAVAEVRRGGLPARLWIVGEGEERRSLESQVEGLGLGGAVQHEIGGPL
                     DRDSLGDVGVHGRVSVIYNAGVEDGVAEKAREPLGEHEGDGTGPLVVACGRLKSLKGF
                     NYLIDAVAEVRKGGLPARLWIVGEGEERRSLESQIEGLGLGGAVRLLGFQSNPFKFMA
                     AADVFVLSSLFEGFGNVIVEAMACGTPVVATDCPYGPAEIITDGRDGLLVPPADAGAL
                     ARALSRVLGDAGLRESLAREGLKRAEDFRAETIAGAYGELFREVAGGTIAERGMRTAE
                     "
     gene            21212..21961
                     /locus_tag="VD968_13080"
     CDS             21212..21961
                     /locus_tag="VD968_13080"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HYE15374.1"
                     /translation="MIHSSVCLHAEMLHDDGVWRLVERALGAMEESGWRATFLVYPLR
                     GQAAGRDARSRVRQIAALGHEVGQHTHFYSGREVERTRKRTDLSDRNVRDCLLRDYEW
                     LRECGVEPKGFCAGNFMTTETVFESLAELGFLYDCSARLPWQRRNYELPHTFLEGAQV
                     RRFGGAPLVMLPNTEFLTLAQALSPSRRRRTAALAGGGARYELINNHDYDLPLRGVWL
                     GLQWRLRRGPRSVETRRLAEMCLEGGDDGRH"
     gene            21945..22727
                     /locus_tag="VD968_13085"
     CDS             21945..22727
                     /locus_tag="VD968_13085"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE15375.1"
                     /translation="MTGDIKSFTAGQFDAQASGWTEGMYSDPEAEMRRRAHFVLNWGA
                     PLRPGDRVLELGCGDGSLSCFLARRGLRVTGIDISPGMVEEARRRARSEGVEAEFRVG
                     DVDGLAADEPFDAAVSFMGAFFMYADDPRAALARLSASVTKKVLLDWNHRSSCTPQEA
                     ARITEGAGFCRVEWRPWFLPVEAVPGAQARARAWLEERPLLSLLPFILRRWRYAIYFK
                     GEKPSAATDGGTKVFGNALPGSAAQRALMRYGLVTRGKRRRI"
     gene            22802..>24136
                     /locus_tag="VD968_13090"
     CDS             22802..>24136
                     /locus_tag="VD968_13090"
                     /inference="COORDINATES: protein motif:HMM:NF024927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HYE15376.1"
                     /translation="MCGICGFLTSEETAPAAGVLEAMTERLHHRGPDDGGVWEGAAPG
                     GWRVGLGARRLSIIDLSERGHMPMQTADGALCITYNGEVYNFRELRRELEALGHRFRS
                     DTDTEVVLNAYRQWGPESLSRLNGMFAFAVWDERERELTLARDRLGVKPLFYAAAKVE
                     GEGGESFVFASEAKAILASGLVKPELDLEGLNQQLTFLWTPDPHTLFRGIHRLPPAHV
                     LKWRDGISTVREWWDVSFDEIEEGKSEDWWRERVLEGSGHEFRTDTDTEVMLEAFAEW
                     GVAGSLARLNGMFAFAVWDERERELTLARDRLGVKPLFYAEAAAEGGGGESFVFASEA
                     KAILASGLVKPELDLEGFNQQLTFLWTPDPHTLFRGIRRLPPAHVLTWREGEASVREW
                     WDVSFDEVEEGRGEEWWRERVLETLDRVVGMEMVADVPLGAFLSGGVDSSVVA"
BASE COUNT         3749 a         8377 c         8279 g         3731 t
ORIGIN      
        1 cacccgagtc gcaaaactcc gcacgcgacc gctaagagaa aggatgcccc cgtatgttcg
       61 gaatgcaccg cccccgcgcc gcgcgcctac gcggcgtcgt cgccgtcgct ctcgcttctt
      121 tcctgctcat gcaattcact ctcccgccca cgcgcacagc cctggcagac acgggcgggg
      181 acactatcct gctcaacggc ccgaacgcga cggccaccga ggacttcaac acgctcgcca
      241 acacggcggg cacgacgcac acgacgctcc cgctcggctg gtacatcacc gagacgggcg
      301 gcagcgctag ggacaacgag gcgtactccg tcggcaccgg cagcgccacc gacggcgaca
      361 cctacagctt cggcccgtcg ggcaacaccg accgcgccct cggagagctt acgaccggca
      421 ccctacagag cacgttcggc gcgcagttca ccaacggcac cggcaagacc ataaactcgc
      481 tcttcatctc ctacacgggc gagcagtggc gcgtcggcgg caaccatacg actatcgcgg
      541 agcgcctcaa cttctcctac agcacggacg ccgggagcct gacgggcggg acctacacgg
      601 acttcgacgc cctggacttc acgcccctca tcacgacggg cgccaccgcg tctctggacg
      661 gcaacaactc cgccaaccgc aaaatcgtgt ccggggccat cacgggtctg agcatcccga
      721 acggcgcgac cttctgggtg cgctggcagg gcgttgacgc tacgagcggc gacgacggcc
      781 tcgccgttga cgacttctcc gtcgcggccg gcacgccctt cagcgacgac ggaatgctca
      841 cagacgacgt gagcgccgcg gtcagcagcc ccgagctgga cgacgcggcc ttctccgtcg
      901 ccatacagtc caccgggagg atagtcgcgg gcggctacgt cgagcagttc ggcgagccct
      961 cccacaagga cttcacgctc tcgcgctaca accaggacgg cacgaccgac gcgaccttca
     1021 cctccccgtc aaccaacttc ggcgccaacc ccgacgaccg catctacggc atcgcgctcg
     1081 aggccgacga cgacatagtg gccgccggca gttcgcacgc ccacggcgcg gggagcagcg
     1141 acgccgtcgt cgcgctctac ggggcgaacg gcggagccca caccgggtct gccatcttct
     1201 cgacggcgaa cgacgcgggc tccgttgacg aggagtttta cgccgtcgcc atacagccct
     1261 ccgacggcaa gatagtcgcc gtcggcacga ccaacgccaa cggcctctac gacttcctta
     1321 tagtccgcta cgacgccttg cttaacctcg acactacctt cggcgatggc gacggcgtcg
     1381 tcaccattga cttcaacacc gccagcaccg tcgaggccgc ccgcgccgtc gccattgact
     1441 ccggcggcaa catcgtcgtc gccggctaca cgcacagcgg cacgaacttt gacttcgccg
     1501 tcgcccgcct gctcggcgcc gacggctcgc ccgacccgac cttcgccggc gacgggacta
     1561 tagtgaccga cttcttcagc cgctcggatc aggcgttcgg actcgccctt caggcggacg
     1621 gcaagatagt cgtcggcggc tcgtccgtcg tggacgcgac gcccaacaag gacttcgcgc
     1681 tcgcccgcta cgagacggac ggcgacctcg acgcgacctt cgacaccgac ggccttcaga
     1741 cgaccgactt cttcggcgag gccgacatca tccgctccgt cgtcgtccag cccgaccaga
     1801 agatcgccgc tgcgggccaa gcgcgcatac agcgcgacca cttcgcgctc gcgcgctacg
     1861 acacgggcgg ctcgctcgac accaccttca gcgccgacgg catggtcacg acccccttcg
     1921 cccacgacaa ggaagaccgc gcctacggcc ttgcgctaca ggatgacggc aaactcgtgg
     1981 ccgcgggcta cgcggagaac ccgtcctcgc cgttccccgt ccgcgacttc gcgctggcgc
     2041 gctacctgcc cgacggcagc cccgacgccg atgtgggcgc cgcgcccgcg cgcaagccgg
     2101 acatcgtcct gaccattgac aacctcccca atcaggtgat cggcacgaac ttcacctacc
     2161 gcatgacggt gacgaataag gggccgggcg ccggcacgaa cgtcacgctg acggacgtta
     2221 tgcccgccga ggtggcgggc ctcagctact taatagccgg ggggccggcg tcgtgcttcg
     2281 gcagtagcgc catagccatc tgcgacttcg gcacgctgca cccgggccaa tccacctacg
     2341 ttgacatcac ggtcgtcggc cacgtggcta ggctggtcac gaacactgcc agcgtgacga
     2401 gcaacgaggg cgactttaac aacgccaaca acacggcgag cgagacgtcg agaatcctcg
     2461 gcgtgtcggc cgtcaacctc agcccgacaa cggtcgtcgg cggctgccag aaccccgtcg
     2521 gcacagtcac cctgtcgggg cctgcgcccg cgggcggcct gaacgtcacg ctcacgagcg
     2581 ccaacccggc ggccaccgtc cccgcgacgg tcttcgtccc cgccggctcg accgtgagtg
     2641 accagttcac ggtcacgacc tcgtcggtcg gctccaccac cgcggggcag ataaacgcca
     2701 ggctcggaac cccgaccgcg tcctcgtccg tcggcaagaa gctgacggtg acgccggggg
     2761 cttgcatcta acttccgggc ggcgccggcc gcgcgcggcc gctttgaacg ggaagggtga
     2821 aggggactgc cgacccttca ccctttctca ttcgccgtcc ccgttttgaa ggcggcccgc
     2881 cgtttgttac aattcgcgcg gtctgcgcac gactatatgc ggtcagcctt gcccgagcgt
     2941 ctccccgttt catccgccgc ccgagcagcc gaagccaacg agacagccag cgcacgcttc
     3001 acccttaaac aaggcaggaa ggttttaaag gcaatgccag tacggaaagt gacgcccctg
     3061 ctcgccgccg cgcgcgcggc ggccctgagc cttatcgcgg cctgcgccgc cgcccccgcg
     3121 ttagcgcagg agcagcagcc gcagccgcaa cagcccgcgg ccacgtcccc cgagcccgcc
     3181 gaggcaaagc ccgacgcagc ggccgccgcc aacgcctacc gcataggcac gggcgacgtg
     3241 ctcgacatag tcgtcacgac gggcagcggc cgcagctccc agctctcggc cgagaacctg
     3301 accgtcaacg agaacggcgt catacaggtc ttcgacggca ccatctcggc ctcgtgcctt
     3361 acggccgacg agctggcggc gagccttaag acgcgctacc tcaagtacaa gaaggagccg
     3421 ctgagcgtcg tcgtcaacgt caaggagtac cgctcgcagc tcgtcgccgt catcggcgcc
     3481 gtcaaggcgc ccggccgctt cgagcttcgc cgccccatac gcctgctcga gctgctcgcc
     3541 ctctacgcca acggccccaa cgagaagtcc gacggccgca tcgagatcgt ccacacgcgc
     3601 gatgccacag tgtgcggcgc gcagggcggc ggccctgcgg gcgagggcgc gcggctcgtc
     3661 gccgcctccc actcctacga ctgggaggac acgcggctcg gccgcgacga ggctaacccc
     3721 tacgtccggc ccggcgacgt gataagcctc tcggaggcgc ccgaggcctt cgtcatcggc
     3781 aacgtccaca acccgatggc gatacctctg cgcgacaagg tcacgctcac gacggcgctg
     3841 gcgatggccg gcgggctgat ggagaacacg aaggccagca agattcgcat cgagcgccgc
     3901 aagccgggca gcacctcgaa ggacgtgctc gtcgccgacc tgaacgccat caagaagcag
     3961 cagtccgagg acgtagtcct ccagcccggt gacatcgttg aagtgccgac ctcgacgggc
     4021 ggcaggataa tcagccgcct gctcggcgcc atctcgcccg tagccacgca ggccaccgtc
     4081 cgcgtcatac gctgaagcgc aagcgtgacc aacgcccgga cttaaccgca gacagcgcgc
     4141 gcctccccgg ccgcgcccga tgggactaca agccgtgaaa gaccataacg agctgataac
     4201 gatcaacggg gagggggccg cccacgacaa cggcctggac aaggcctcgt cgctcccgcc
     4261 ctacctcatc tctcgcacga tggagccgct cgaggccgac gagggcgtgc acctgcgcga
     4321 ctactggatg gccgcgcgca agcgcatctg gctcgtcatc ggcgtcacgc tcgtcgtgac
     4381 ggtgctggcg accatctaca tggcgcgcaa gcccgacata tacgaggccg aggcccgcat
     4441 acaggtcaac ctcgagaacc cgaacccggc gctcggcgcc tcgggcaagg gcggcagctc
     4501 cgtcatcgtc agcggctaca acgacccgac ctacttcagc acgcagctcc aaatcctcac
     4561 ggggccgggc ctgctgcgcc gcgtcgccaa gacgctcgac ctcgagcaca acaagaactt
     4621 cctgcgcgcg gcgcagggcg cgcccaaccg ctcgacgtgg cgcagcgtgc tgcgcatatt
     4681 cggcttcgac accaagaaga agtcggagga gcaggcgccc gaggaggcgg agcttccgct
     4741 cacgacctcg gtcgcgcccg ccgtcgccaa ggaagacctc gccgacgcca agcggctcgc
     4801 gccctacgtc aaggccctgc aggcgggcct caaggtcgag cccgtcaagg agacgcgcct
     4861 ctcggttcgc gacacgcgcc tcattgacat cgcctaccgc cacacagacc cgacgacggc
     4921 cgccaagata gtcaacgcca tctcggacac cttcacgctc gcaaacctcg agaagaagac
     4981 cgagacgaac acgaccaccg gcgactacct ccagaagcgc atcgccgagc ttcaggcgca
     5041 gatacgcacc gacggcgagc gcctgagcaa ctacgctcgc aaccaccaga tactctcgct
     5101 cgacgccagc cagaacaccg tcgtcgagcg cctcgcgggc ctcaaccgcc agttgctgga
     5161 ggccgagaac gcgcgcaagg aggccgaggc cgcctaccgc gccgcgctct cgcccggcgc
     5221 ggccgaggcg ctggcctccg ccagtctcag ccagattcag gagctcgaca tgaagatcgg
     5281 cgccctgcgc cagcagcgcg cgcagctcct catcgagaac acggaggact ggcccgaggt
     5341 caagaacatt gactcgcaga taaaggcgct cgagaagcag atagccgaga cgcgccagcg
     5401 cgcgagctcg accgtcacca caaacctcaa gacgcgcttc gaccaggcgc tcgcgcgcga
     5461 gcaggcgctc cgccaggcct tcaacgagca gcgcgccgcc acagtcacgc agaacgaggc
     5521 ctcgattaac taccgcctca tacagcaaga gctggacacg aacaaggcgc tgctcgacgg
     5581 cctgatgcag cgcttccgcg agaacgacgt ggtgcaggcc ggcacgccca acaacatcta
     5641 cgtcgttgac tacgccgtgg cgccggacgc gcccgtcgcg ccgcgccgcc tgcagggcat
     5701 cgcgctcgcc ttcgcgctct ctctgacctt cggcatcggc ctcgccttct tcctcgagta
     5761 cctcgacgac acgatccgct cgatggagga cgtcgagcgc atgctccacc tgccgacgct
     5821 ggccgtcatc ccgcaggtgg gcggcctcgc gcgccgccgc ctgctgcccg gcctgaaggc
     5881 cctgaagagc gcaaacggga acggcaacgg caacggcctc ccgcccgagc tgctatttaa
     5941 cgccgacgcg cgctcggggc tggccgaggc ctaccgccac ctgcgaacgt ccgtgctgct
     6001 ctcgacgccg gggcagccgc cccagacgct gctcgtcacg tccagcctgc cgtccgaggg
     6061 caaaacgacg acggccgtca acgtcgccat gagcctcgcg cagacgggcg cggacgtgct
     6121 cgtcatagac gccgacatgc ggcggccgcg gctgcactcg ctcttcaacg tcggcaacca
     6181 ggagggcctg agcaccctcc tctcgcgcga gctgagcgag gccgaggtca tggccgtcct
     6241 caagcgcgac gaggcgagcg ggctctacct tatgacctcg ggcgcggtgc cgcccaaccc
     6301 ggccgagctg atcgggtcgc agcagatgca gcagttgatg acgatcctca aggcccgctt
     6361 cggccacatc gtcatagact cgccgcccat cgcctcgttc acggacggcg tgctcatctc
     6421 gctgatgacg gacggcgtgc tgctcgtcat acacggcggc aagagctcgc gggccgtggt
     6481 gcgccatgcg cgccagcagc tcaagaacgt gggcgccaaa gtgctcggcg tcgtcctcaa
     6541 caaggttgac caccgcacgg gcgactacta ctactactat cactacggct actacagcca
     6601 ttactactcc ggctcggacg gcgacggcgg cggcaaggag ctgaccgcct gagccgcggg
     6661 gagggttaac cgcagaggca cagaggccgc gcgcgggcgc cgagagggtt aagccctccg
     6721 tgccgtcccc gcgctctctg tgcctctgtg gtgaagagtc tgtgaatgtc ggcgacgaag
     6781 gccactgcca cgaacgctgg cgcgcgcgag ttcgtgctgg acacggccgt ggtcgcggtc
     6841 gcgcagcttc tgctgaagct ccgggggctc atagcgctcc cgctcatcgt caaggcgctc
     6901 ggcacggccg agtacggcgt ctgggcgcag acgctcgcgc tcattgactt cgccggcagc
     6961 cttctgggcg cgaacctgta ccacccgctc gtgcgcttcc tcgccgagaa gcaggcggac
     7021 ggcaggacga tatacgggac gctcctcgcg gcgaccgtgg cggcaagcgc gctaggcggc
     7081 gccgccatct gggcgtcggc cgaggggctt agccgatacc tcttaagcga cgcgggctac
     7141 ctctggcacg tgcgcgccgg ggcggtgctc gtgctctgct acaacgtaag gctcctgaac
     7201 ctgaacgcct accgcgcgac cggcaggctg aaggagcgct cgctcttcga actggtctcg
     7261 accttcgggc agttggcggg cgtggcgctg cttctgtggc aggggcagac gctccttcgc
     7321 gtcttagtct tcatggcggc gtgggaggcg gcgttcgcgg cgctcctgac ctggcacgtc
     7381 tcgacgatag tcggctgggg ggcgccgagc cgcagggtgc tctcggaggc gctgcgctac
     7441 tcgctgccgc tcatgccggc cgtgctctcc atcagcctgc tcgaccgcgg cgaccgcttc
     7501 gtcgtcggct actacgaggg cgcggagggc gtgggcgtct attcggcaaa ctacgcgctc
     7561 gccgcgctgc tcatgctctt ccagacgccc ttgcagatga cgctgctgcc gaaggtggcg
     7621 gcgctctggg cgaccgagcg cgcggcggcg cagaggtaca taagcctctc gaacaaggcg
     7681 ttcctgacgc tcgccatccc ttacgtggcg gcgatgccgc tcgtggcgcc gcgccttctc
     7741 gagagcctcg gcaactcgaa gatagcgggg gcgggcgggg tgctgacgct tctggtgtcg
     7801 gcgggcgtga tgatgtgggg cgtgagcata atgcagtcgc aggtcttcta cggcgcgcgg
     7861 cgcacgctgc ccgtagggat agtgacgggg ggggcggcgg cgctcaacct cgggctcaac
     7921 ttcgcgctcg tccccctgat ggggataagc ggagcggcgc tcgccacgtt cgtctcgttc
     7981 ggcgccgcgt gcgcggcgct ctacctcctg agccgcgaca tattcgggct cgacttctac
     8041 ccggcgcacc tcttgaagtg cgccgcggcg gccgtgctga tggcgggcgt gctctgggcg
     8101 ctgctcgcgg gcgcgggggc gccgctcatc ccggcggcgg cggccggcgc gctcgcctac
     8161 ttcgcggcgc tctggctgct gcgcgcgttc ggggccgagg aggtctcaat cttacgcggg
     8221 ctgctgcggc tgccggcgcg cacttgaggg gggcgcgggc ttgatagcgc aggtgacgaa
     8281 gggcgagcag cggcagatag gggccgactg ggacacgacg acggccgtct cggtcgtgct
     8341 catagcgctc gtgagcgtcg cgcttcttgt cgcgctcgtc gtcagccgcg tgagggacaa
     8401 ggccgagagg aagaggcgcg cgcgcgagca ctacggccgg gcgcggggca ggcgccggag
     8461 gaagtcttcg ggaggcaatg tcagagggta gcgaaaaggt cgcggcgggg gccgagtcgg
     8521 tcacgcaccg cacgctctcg gggatgttct ggatggtctc gggctcgggc ctacaggccg
     8581 tgctgcgcat cggcgtcctc gtggtgctgg cgcggctgct cgacccgcag gagttcggcg
     8641 tggtcgcggc cgcgctcata gtcgttgact tcctcgagat attctccgac ttcggcatgg
     8701 ggccggccgt cgtgcagcac cgcgcgcccg aggagcgcca catccgcacg gccttcaccg
     8761 tctcgctcgt gctcggctgc atcttcgccg ccgtgatatg ggcggcggcg ccgctggccg
     8821 ccgccttctt ccgcatcgag gcgctgacgc ccgtgatgcg cgccatgtcg ctcgtcttcc
     8881 cgctggacag cctcgcgctg gtctcggcct cgctgctgcg ccgcgacctg aagttcagga
     8941 agctggccgt catatctgtg cgctcctacg ccgtcggcta ctgcgtcgtg ggcgtggggg
     9001 cggcgctcgc gggcttcggc gtctgggcgc tggtggctgc gaacctttcg cagacgctgc
     9061 tgtcgagcgc gcaactgctg tgggcgcggc cgcacgcgaa gcgcctgctc ttcgaccgcg
     9121 cgacgctcaa ggagatgacc tacgcgggcg ggggcttcag cgccgcgcac ctcttcaact
     9181 acgcggcgct caagggcgac aacgcggtgg tcggcagggc gctcggcgtg gccgcgctcg
     9241 gcctctacac gcgggcctac gggctgatgt ccatttccgt gagcgtcttc ggcgcggcgc
     9301 tcgacaaggt gctgttcgcg gcgatgtcga gggtgcagga cgaccccgag cggctgacgg
     9361 ccgccttccg gcgcgggctc gccggcctgt cgctgctggt gcttccgatg agcgccgcga
     9421 tgtgcgtgct tgcgcctgag cttgtgcgcg tgctgctggg cgagaagtgg tcgggcgtga
     9481 cggcgccgtt ccaggtgctc gccgccggca tgctcttccg caacggctac aagctctgct
     9541 cggcggtggc gcgggcgcgc ggcgccgttt accgcaacgc gtggaggcag ggcgcctacg
     9601 ccgtgatggt actggcgggc tcgctggcgg gcgcgcgctg gggcctgacg ggcgtcgccg
     9661 ccggggtcct ggcggcgctc gggctgcact tcgccgtgat ggcgaagctg gccctgtcgc
     9721 tgacgcaact ggggtggcgc gaatacctgt cggcgcacgt cccggcgctg aggctcacgt
     9781 tgctgctcgc gctcgagctg tggttcgtcg tgacactctc gcggggcgtg ggcctcgccc
     9841 cggccgcgac gctcgcggcc gcgctcctgt cggccggggc gacgatggtc gtgctgctgc
     9901 gcgtgagccc gaggctcgcg ctgggggggg acggcgtgtg ggcgctcgaa agagtaatcg
     9961 agagggcgcc gggcagggcc atgcttacgt ggtggctcag gctcggcgcg agggatttgc
    10021 cgggcgcggc ctgagggcgc gcgcgacggc cggccggagg tcaactggtt ttgagtcagc
    10081 tcgacagtca taaagggcag gacgcggcgg cggcgggccc cttctttatc gtctataagg
    10141 cgcgctccgg ctcgacgcac ctggccgagc tgttgacggc gcacccctca atcggcatcg
    10201 cgccggagag caatctggtg ctcagcctct gggagtggtc ggggggcggc aggcggcgcg
    10261 tggaaacggc cgacgacttg agagaggcgc tcgacatgct ctacgccgag ccgaagttcg
    10321 tgacctggga ggtcgggcgc ggcgccctcg aagcgagcct tctgccccgg ctgcccgtgg
    10381 gcgtcggcga agtggcgatg gcggccgtga acgactactg cgcggcgaag tacccttcga
    10441 gcagcgtgcg cggcgtcaag aagggctcct acgccctgca cgcgcccgcc gtgctgggga
    10501 tgttccccgg cgcgaagttc atatcgctcg tgcgcgacgg gcgcgccatc tacgcctcgt
    10561 cgaagagggc gcgccacagc gacacggggg agccgttcga gacagacccg gtgcgctcgg
    10621 ccctcgtctg gaagcgcatg gtgacggcgc tcgaccgcta ccgcggcgag cccttcttcc
    10681 tagagattca gtacgagcgc ctcatcgccg agcccgagga gactctgcgg cgcgtgctct
    10741 cgttcctcgg cctgccggcc gggccggcgg agctggaggc gatgctgcgg ccgcgcgagg
    10801 cggccttcgt gcacaagagg tactcgtacc tgcacccgca cgtgggcaag gcggggcagc
    10861 tctcgcgcat agacggctgg cgcgaggagt tgccggaggg ggaggtgcgc gaattcgagc
    10921 gcgtcgcggg gcagacgctc gcgagcaagg gctacgagcc cgtgtccaag ccgggcgcgt
    10981 gggacaggct ccgcgcgagc atgctcgaga cgcgcgtggc cgtgggccgg aggctcaggc
    11041 gcaaggcatg actacggagg ggttaggggt ggcgagcgcg tttacgacgg cggagggcgc
    11101 cgaacaggcg gcgggcgagg agcgcaggat tcaggaggcc gagtacggct tcccctacca
    11161 ctacctgccg actttcgaga agggcaagtt ctcgcagttc aggaacctgc ggtggggcta
    11221 cgagtacctg tcctacaccc gcttcgtttt gtcgaagctc gctgaaagag acttcgactc
    11281 gctgctcgac gtgggctgcg gcgacggccg cctgctctac gaggcgcgga ggctcttccc
    11341 ccgaaagacg ctcgtcggcg ttgactactt cgagccggcg gtggcgctcg cgcggctcct
    11401 aagccccggc gtcacttacg tgcgcggcga cataacagac ccggcgctgc tgggccggcg
    11461 cttcgacgcg gcgacgctcg tggacgtgct cgagcacgtg ccgcccgcgt tcctgcccga
    11521 gttcgtggcg ggcgtccgcc agcacgtcga gccggggggg cgcctcgtcg tcacggtgcc
    11581 gagcacgaac cagccgctca accgcaagca ctaccagcac ttcacgctcg agagcctggc
    11641 gcgcactctc gagccacact tccgcgtgac cgagcaccac ttcatcaacc gccggtcgcg
    11701 ccgcgtgcgg ctgatagaga gccttctgac caacaggctc ttcatcctta acgagcggcg
    11761 gctgctgcgc gccctctacg aagactacga gcgtcacgcg ctgcgcgcgg gcgagcgcga
    11821 ctgcaagcgc atctgcgtcg tgtgcgcgcc ggccggctaa aggccgagcc ggggtcgaaa
    11881 ttcttcacgc tttttttatc actcggaggt attcatgcag aaggtgctta cgaagggcct
    11941 gatgaagtta atcgggaaga acggcggcgg ccgcggcccg gcggagaggc ggctgaagtc
    12001 gccgaacggc aacggcgcgg cagcgcccgt caccgcgccg cccgccttcg ccgtcgggac
    12061 gggcaggtgc ggcacacact tcctgcgcga cctgatggag aaagaccccg gcatagcggc
    12121 ctaccaccac cgctccatag actcggacgc cttcgcgcgc tactgcgcat ggaaccgcct
    12181 gcccgtggac atgagcccct tctacgacgc gcggcgcgcg tggattgacg aggtgcgctc
    12241 ctcggggctg ctctacttcg agtccgagcc ctacctttcc ctgagcatcg tgccgctcta
    12301 cgagcgcttc ggcgcgcgct tcgtcttcgt cgtccgccgg cccgaggacg tggtcaactc
    12361 cctcttcgtc aagggctggt acgccgagga gttctacaag gccgacgccg acctcgcgcc
    12421 cggctacgcg ccgggcctcc ggggcaacca cgttttcggc cgcatcgtcc cgaacggcga
    12481 ggagttccgc cgctggagcc ggctcacgcg cgtcggcaag ctcgcgtgga tgtggaacgc
    12541 gctgaacgtc aggactcttg agcagctacg cgagattccc gaggagcagt ccgtcaccgt
    12601 caagctcgaa gaacttggct acgactgcta ccgccgcctg cacgccttcg tcggcggccg
    12661 gcagtccatg agcgagcagg agttcgaccg catacgcaac tcgaagcccg gcaaggggcg
    12721 caatcaccgc accgccgacg tgtggtccga gcgcgagcgc cgcgagttcg aggccgagac
    12781 cgaagagggc cgccgcctgc tcggctacga gtgaggcgcc cgcgccgaag ccgcacatga
    12841 gaatcgcatt catataccgc ggggaattca ccaagaggtc tgccaaccgc ctctcgatgg
    12901 tgaagaacgt ggccgccgcc cggcggctcg gccacgaggt agtgctctac ataccgagag
    12961 acggcctgcc cgccgccgag tcgcgcgccg ccatcgagaa ggctctggcc gagtacgccg
    13021 gcggcgagca gttccccgtg gtgcgcgtgc cgcgcccgac gctcggcggc aagctgcgcc
    13081 gcaccttcga tctcctggcc gcggcgcgcg cgcgcgccgg ctccttcgac ctcgtctggt
    13141 cgcgggagtt ccacgcggcc gactacgcag cggcgctcgg cctcagggcc gtgctcgagc
    13201 accaccactt ccccttctcg ccgaggcagt ccgcgatact gcgccgcgcg ctcggccgta
    13261 agggcttcag gggggtggcc gccatctccg gcgctcagag gcgcatgatg atcgaggcgg
    13321 gcttccccgc cgacagggtc gtgaccgtcc acagcggcgt tgacctcgcg cagttcgagg
    13381 cggcgcgcgc gtcgcagaac ggcctgcgct ccggcctggc ggcgccgggc gagccgctcg
    13441 tcgtttacgc cggcagcctc taccccggca agggcggcga gatgatactc cccgtcgccg
    13501 agcgcctgcg cggggtgcgg ttcctctgca ttggcgggcg cgacttcgag gtggccgaga
    13561 tgcgggagcg cgtggaggcg cgcggcctga ccaacgtcac gctctcgggc catatgccgc
    13621 acccgcaggt ggtcgcgcac ctgctcgcgg ccgacgtgct catcgcgccg ttcaccgagg
    13681 gggggcagga cataagcggc aaggtcataa tgcccttcgc ctcgcccatc aagctcttcg
    13741 agtacatggc cgcgggccgc ccgctggtca cgtcggacgt gggcgctata cccgaggtga
    13801 tacgcgacgg cgagaacggg ctgctcgtca agcccggcaa cgtcgaaggg ctcgtctcgg
    13861 ccgtcacgag gctgatgggc gaccgggagc tctccgaccg gctcgccgcc gccgcccacg
    13921 aagacgtgaa ggcttacaca tgggagaggc gggtcgagcg cgtgctcgac ttcgccttcg
    13981 gaggctgaag gccgctcggg ccgggagaat ttttctatgc ttgcgcgaac gaacgggaat
    14041 tgggccaaca ccttcatcgc cggcgtcccg aagggcggga ctacggcgct cgccgccata
    14101 ctggcgcagc acccggaggt cttcgtgccc cgtaagaagg agcccaggta ctactacttc
    14161 aaggacgagg agatcagccc ttccaacaag gtcaaccgga acgtcatcac gaaggccgag
    14221 cactacgccg ccctctacgc cggcgcctcc gagaaggtgc tcgttgacgc cagcccgtcc
    14281 tactacggca gcgagaaggc gctctcgctg atcaggcagg acgtccccgg cgcgaggctg
    14341 atactgctgc tcagagaccc cgtggagagg acgttctcgc acttctggtt cgccgtgcag
    14401 aggggctacg agccgcccgg ctcgaagttc gaggacatct tcaccgccgg cgaggttgac
    14461 gccgggggcg ggtacgtgcg ccgccggaac tacctgaagt cctccgttta cgtcgagcgc
    14521 ctggacgccc tcttcaaaat cttcccgagg gggcaggtct atatgaccac cagcgagcgc
    14581 ttcatgttcg agcaggcgac cgtcctctcc gagatttgcg agttcctgga gataggccgc
    14641 tacgacttcg acctgggcgt cggcgagaaa gccaagtcgg gcctgcccaa gagccgactc
    14701 gtgcacgctc tgacgcggaa cgcccaacgc gttatgaagc tggcccccgg cctgatcccc
    14761 aggcacgtgc gcgagggcgt ggatcgcgcc cacaactcga accttgttaa gccgcaaatg
    14821 ctgcccggca cgcgccgcag gctggttgac tactaccgcg actcggtctc ggagctggcc
    14881 cggaagcatc aggttgacgt tagccactgg cggaacttca gcggcgccac gcgagaattt
    14941 cagttcaatg acgaccgcgt ttagagccgc acccggccgg ggcgaagccg agacgttagg
    15001 ggcgcaagcc ggcgcgcgcc ctgcggcggc ggccgtgccc gtcctcttcg tcgtgatgca
    15061 gtcgggcgcc agcgcgaacg ggggcgtcga gagcattacg caggtgcttg agcagctgcg
    15121 gcgcgtgcgg ccgctggtcg tgacgcagtc ggagacggcg gccacccggc gctggcgcga
    15181 ggcgggctgc gaagtgctcg tgtggcccac gccgggccgg ccgagcgccg cctccgtgct
    15241 ccgcttcaac tacggggttt acagactgct gcgctcccgc ggccgcccgg ttctccactg
    15301 caacgacatc acatcgctct ggcacgcggg gttcggcgcg agggccgccg gctcgccgat
    15361 agttttcaac ataaggagcg tgaagccgcc ggggcaggag tacggctggc gctggcgcat
    15421 ggccggccgg ctgagcgacc ggcggctcgc gctctcggcc gagatgcgcg acgcgcttgc
    15481 gcggcggctg cccctgccgt cgcgcgccgg ggggcaggcc gaagtcgagt tcatctacag
    15541 cgtcgttgac ccggcgaggc tgtcgcccat gcccgccggg gagcgcgccc ttgcgcgccg
    15601 ccgcatgggc ataggcccgt cgtgcttcgc cgtcggcgtc gtcgcggcat tccacccgcg
    15661 gaagaggcag ttggaattga tacgcgaggc cgcgccgctg ctcaaggcta aagtcccgca
    15721 cgcgcggctc tacttcgtag gcgacttcga cccggagagc gacgactacg cgcgccgctg
    15781 cgcggaggcg gtgcgggagc gcggcctgga gggctcggtc acctttgtcg gctactccga
    15841 gaaggtggcc gactggtacg gggtgctcga cgcggtggcc gtggcctcga agaacgaggg
    15901 gctcgcgagg tgcatgatcg aggccgtcgc gtgcgccacc ccggtcgtct ccttcgacgt
    15961 gtgctcggcc agggagattc tcgaagggca cggctgcggc ttcgtggtgc cgcaggaggg
    16021 ctacggcgcg ctcgtcgaaa agctcgcgct cctggcgggc gacgaggccg cgcgtcgcga
    16081 gctcggggag aggggcgcgc gcgcggcccg cgagctattc gacccgcggc gcgtggcggg
    16141 gctgtacgag gagctttact cctcgctcta cgggaggtga ttggatggag gcattgagtc
    16201 gtttcagggg gccggagctg tacatacctc cggccgccgt gcctgcgaga cagagacaga
    16261 agggctatga ctcgcccttc ctccacatgc acctgctcta caggatcggg atcatcgccg
    16321 tctacgcgtt gatactgctg acgattgtcc tcaacgtgga gatatcgagc aggtcgcccg
    16381 tcttcatact gctctgcatc gcgctggtgc tgaacttcgc ggtggtgttg ctgccgataa
    16441 tcttctacaa gccctcctac ggctggttcc acccgctcgt cttcaacgcg tgcatgtacc
    16501 tgctgttcca gttccgcagc tacgcgacct actggggggg gctcagccac cacaaggcgc
    16561 tgcccacgtg gagccccgaa gaaatcctga cgctcgtcgt ttacgcgatt gcgctgaagt
    16621 ccatcgcgac ggcctcctac ttcttcggct tcttcttcgg cccgagcttc aaggtgccgc
    16681 gactctcctt cccagtgccg aacagggtgg ggctcaaggc ggtcgtggtg gtgctggtca
    16741 ctctggtcgt cttctacttg tacatcagcg gcaagggcgg gctggccgcg caccttctgt
    16801 cgtggcagga ggggcggcac gacgcgatgg cgggcgacgg ttactggcac ctcgccataa
    16861 agttcgcggc ggcggcgacg ctgttgtggt tcacgctcga ccggcgcgcc gcctacaagc
    16921 cggtcttctg gctctgcgcg ttcgtctcca tcctcatcaa cttcttcgcg acggggtcgc
    16981 gctcgctggc agtctttttc gtcatcgccg ggttcctggt ctggatgctg cgcgagaaga
    17041 aggtcgcgcc ggggaggatt ctaataatca cctttgtcgt ggtgtcggcc gtcgggctgc
    17101 tgggcagcta ccggcagcag atttggaggg gcgagacgag cctggcgagt accgcccaag
    17161 acagtagcgt gctcgacagc ttcatagagg gcgcggtcga gtccggggag cgctcctggt
    17221 cgggcaacgg cctgctcccc atcatcgcgc tcgtgccgca tgacgtggat ttcctctacg
    17281 gcagctccta cgtctccgtg ctgacgctac cgataccccg caagctctgg gaggataagc
    17341 cggggcagat aggcgggctc gtcggcgaaa ccttcttccg ttcgccggcc gggacgccgc
    17401 ccggcgcgat aggggaagcc tactggaatt tccacatacc cggcgtcgtc ctgatattct
    17461 tcatctgggg cgcgttccac aagtggctca aggacgttta cctggcctac gcgggcaagc
    17521 ccgcgatgat actcatatac ctgaacataa tgttcacctt cgaccccacg acgcccgcgc
    17581 tggtggccgg catgctgcaa ctcatgcccg cgctcgtcct cttctggttg atcggcgcgc
    17641 tgcgtttcgg ccgctcctga agcccgagag atgctcccga accttgtaat cgccggcgcg
    17701 cccaagtgcg gcaccagctc gctcttcaag tggctctccg accacccgcg cgcctgcggc
    17761 tccgccgtca aggagactta ctacctcctc gaccccggcc acccgctgct ccggttcgcg
    17821 cgctccagct accatgagca ggggctcgag ggctacgagc gcctgttccc gggctgccgc
    17881 ccgggcgagc acgacgtcgt cttcgaggca acgacccatt acctctacca gcgcacggcg
    17941 ctcgaagtcg tcgccgggct cccgacgcgc ccgcacgtcg ccttcgtcct tcgcaagccc
    18001 tcggagcgcg tgtactcctc ctaccagtac acgctcaaca accttgcgaa gctagacgac
    18061 agaatttcgt tcccgcgctt cgtccggctc gtcaagggcg aggaggacgc tggcgcccct
    18121 ctggacgagg ttctcggcga gagcgcctac gtgctgaaga acgacatagg ctacagccgc
    18181 tacgtcgagc acctgcggcc ctgggtcgag cgcctcgggc gcgggcgcgc ccacgtcctc
    18241 ctgttcgagg atatgaggcg cgacccgcgc gcctttatga aggatttcgc cgcgcggctc
    18301 gggctcgacc cgtcgttcta cgactcgtac tccttccccg tgcgcaacga gacggtgcgg
    18361 ataaagagcc ggcggctgca ccgccgcgcg cgcatgttcg agggcgtgct gcccggcggg
    18421 gccgtcaggg atttcgtgcg cgggctctac ctgcgcgcgc agtcgggggg ctccggcgcc
    18481 ccgcgcaaga ccgaggaaga cctgcgcgcg ctcgaagagc tcgagcgcga gttccagccc
    18541 ttcaaccgca ggctcgcatc ggaacttggc gttgacatct cggcgtgggg ggcgcccgcc
    18601 gcgcgatgac ggctgaagct tcgacggcgg cgagagagag agagacggcc gggggcgccg
    18661 cgttacggct gcgctgcacg gcttgcggct ctccgctcgc gtggggcggc ccggccgacg
    18721 cggcgcgccc gcttgagtgc gcgtgcggcc gttcgttccc cgtcgtgggc ggcgtgccgc
    18781 gtttcgtctc ttcggagaag tacgtcgcct cgttcggcgt ggaatggaaa gagttcccgc
    18841 gcacccagct cgactcggcc aacggcacgc gcataagccg ctaccgcttc gggctgctcg
    18901 cgggcgtcga gccggaggag cttcggggca agcgggtgct cgaagtcggc tgcgggactg
    18961 gccgcttcat ggacgtgctg gcagaggcgg gcgcagaagt ctggggcgtt gacttgagcc
    19021 tcgccgtcga ggtcgcggcc gagaacctcg cgcgccacgc tcgggcgcgc gtcgttcagg
    19081 ccgacctctt ccggatgccc ttcggcgaag acgagttcga cttcgtctat tcgttcggcg
    19141 tcatacacca cacgcccgac ccgcgcgccg cggtcgccgc gatggcgcgc cacctgcgcc
    19201 ctggcgggcg cctcgccgtc tgggtctatg gccgcggcgt gtcgagcggg atcagggggc
    19261 gctgggtgcc gcgcccgcac aaggtttacg gcgcgctcgc caagaggctg ccgccgcgcg
    19321 cgcgggctcg cgcgctctcg gcctacacgc gcctcgcact cgcggccggc tccgccccgg
    19381 tggtgggcgc ggcgctccgc cacgtgctgc ccgtgcagga cttgcgcagg cgcgggccgc
    19441 tacaggacgg ctacgacccc gacggcggcc gcgcgggcga ggaactgcgc ctcgagtggg
    19501 cgcgccacag cgccttcgac atgttcacgc cgacctacgt cactcagcac gacttcgagg
    19561 aggccgcagg ctgggcgcac tcggccgggc tcacggccgt cgagcgcggg cctgtgccaa
    19621 cgaccgtgcg cgcgacgaag ccgcgcgcga cgccgtacag gcaggggggc gacaagctgc
    19681 acgtcctgtt cttcgtctcg cgcctgaacg gcggcggggc cgagatgcac atgctgcgcg
    19741 tgatgaacca cctcgaccgc tcgcgcttcc gcgtctcgct cgccgtgacg aggcccgccg
    19801 gctccttcga gtcggcactc gccgaggacg tgcggatgca cgtgctggga acgggcggga
    19861 gcgactcgac cacggtgagg atgctgcggg ccgtcgggcc gctcaggcgg ctcatgagcg
    19921 aagagcggcc cgacgtggtc tgctccgtga tggagcttgc gaacatcgtg aacgtgcgcg
    19981 ccgcgcgggg cgccgagccg cggccgcggg tcgtgctcgg cgtccagacg ccgccctcga
    20041 tagcgctgcg ctacaagttc caccccgtca acgcgctcgc gctcaagctc gtgccgcgcg
    20101 tctacccgca ggccgaccgc gtcgtggcgc tctcgcgtgg cgtggcagag gacgtggcct
    20161 ctctcgcgcc cggcgtgcgc ggccgcgtga gcgtcatata caacgcgggg gtcgaggacg
    20221 gcgtgacgga gaaggcgcgc gagcctttgg gcgagcacga aagagacggc acggggccgc
    20281 tagtcgtcgc gtgtgggcgc ctgaagtcgc tcaagggttt caactacctg atagacgccg
    20341 tggcggaagt tcgtaggggg ggcttgccgg cgcggctctg gatagtcggc gagggcgagg
    20401 agcggcgcag cctcgaaagt caggtcgagg ggctgggcct ggggggcgcg gtgcagcacg
    20461 agatcggggg gccgcttgac cgggattccc tcggcgacgt cggcgtgcac ggccgcgtga
    20521 gcgtcatata caacgcgggc gtcgaggacg gtgtggccga gaaggcgcgc gagcctttgg
    20581 gcgagcacga gggggacggc acggggccgc tcgtcgtcgc gtgcgggcgg ctgaagtcgc
    20641 tgaaaggttt caactacctg atagacgccg tggccgaggt tcgtaagggc ggcttgcccg
    20701 cgcggctctg gatagtcggc gagggcgagg agcggcgcag cctcgaaagt cagatcgagg
    20761 ggctgggcct gggcggcgcg gtgcggcttt tgggcttcca gtcgaacccg ttcaagttca
    20821 tggcggccgc cgacgtgttc gtgctctctt cgctcttcga gggcttcggc aacgtcatcg
    20881 tcgaggcgat ggcgtgcggc acgcccgtcg tcgcgaccga ctgcccctac ggcccggcag
    20941 agataatcac ggacgggcgc gacggcctgc tcgtcccgcc cgccgacgcc ggggcgctcg
    21001 cgcgcgctct ctcccgcgtg ctcggcgacg cggggctccg cgagagcctc gcgcgcgagg
    21061 ggctgaagcg cgccgaggac ttccgcgccg agaccatcgc cggcgcatac ggcgagctgt
    21121 tccgcgaggt cgccggaggg acgatagcgg aacgcggaat gcggactgcg gaatgacgaa
    21181 agacgtgccg tcttcaactc cgcaatccgc aatgattcac tcttcggtct gcctccacgc
    21241 cgagatgctg cacgacgacg gcgtgtggcg actagtcgag cgcgcgctcg gggcgatgga
    21301 ggagagcggc tggcgggcga cgttcctcgt ctacccgctg cgggggcagg cggcgggccg
    21361 ggacgcgcgc tcgcgcgtcc gtcagatagc ggcgctcggg cacgaggtcg ggcagcacac
    21421 gcacttctac tcgggccgcg aggtcgagcg cacgcgcaag cgcaccgacc tgagcgaccg
    21481 caacgtgcgc gactgcctgc tgcgcgacta cgagtggctg cgcgagtgcg gcgtggagcc
    21541 caaaggtttc tgcgccggga acttcatgac gacggagacc gtcttcgagt cgctagccga
    21601 gctgggcttc ctctacgact gctcggcgcg cctgccgtgg cagcgcagaa actacgagct
    21661 gccgcacacc ttcctcgaag gcgcgcaggt tcggcgcttc ggcggcgccc cgctcgtcat
    21721 gctgcccaac acggagttcc tgacgctcgc gcaggcgctc tcgccttcgc ggcggcgcag
    21781 gacggcggcg ctcgcgggcg gcggcgcgcg ctacgagcta atcaataacc acgactacga
    21841 cctgccgctc aggggcgtgt ggctcggcct acagtggcgg ctgcggcgcg ggccgcgctc
    21901 ggtcgagacg aggcggctcg cggagatgtg cctcgaaggc ggagatgacg ggcgacatta
    21961 agagcttcac ggccggccag ttcgacgcgc aggccagcgg ctggacggag ggcatgtact
    22021 ccgaccccga ggcggagatg cggcgccgcg cgcacttcgt cctcaactgg ggcgcgccgc
    22081 tgcggcccgg cgaccgcgtg ctcgagctag ggtgcggcga cggctcgctc tcctgcttcc
    22141 tcgcccgccg tggcctgcgc gtgaccggca tagacatctc gcccggcatg gtcgaggagg
    22201 cgcggcgccg cgcccgcagc gagggcgtcg aggccgagtt ccgcgtcggc gacgttgacg
    22261 gcctcgcggc ggacgagccc ttcgatgcgg cggtctcctt catgggcgcc ttcttcatgt
    22321 acgccgacga cccgcgcgcc gcgctcgccc gcctctcggc ctcggtgacg aagaaggtgc
    22381 tgctcgactg gaaccaccga agctcgtgca cgccgcagga ggcggcgcga ataaccgagg
    22441 gcgccggctt ctgccgcgtc gagtggcggc cgtggttcct gcccgtggag gcggtgccgg
    22501 gagcgcaggc gcgcgcgcgc gcgtggctcg aagagcgccc gctgctctcg ctccttccct
    22561 tcatactccg gcgctggcgc tacgcaatct acttcaaggg cgagaaacct tcggccgcca
    22621 cggacggcgg cacgaaagtc ttcggcaacg cgctccccgg cagcgccgcc cagcgcgcgc
    22681 tcatgcgcta cggcctcgtc acgcgcggca agcgcagaag aatttgaaag accggctttc
    22741 gggatcagga tttcaaattt gaaaccccgg agctgattgc tgactgctga aagcttctct
    22801 tatgtgcggc atttgcggat tcctcaccag tgaagagacg gcgcccgcgg cgggcgtgct
    22861 cgaagcgatg acggagcggc tacaccaccg cgggccggac gacggcggcg tgtgggaggg
    22921 cgcggcgccg ggcggctggc gcgtagggct cggcgcgcgc cgcctctcga tcattgacct
    22981 ctccgagcgc ggccacatgc ccatgcagac ggccgacggc gcgctgtgca taacctacaa
    23041 cggcgaggtc tacaacttcc gcgagcttcg gcgcgagctg gaagcgctcg gccaccggtt
    23101 ccgctccgac acggacaccg aagtcgtcct caacgcctac cgccagtggg ggccggagag
    23161 cctctcgcgc ctcaacggca tgttcgcctt cgccgtctgg gacgagcgcg agagggagtt
    23221 gacgctcgcg cgcgaccgcc tcggcgtcaa gccgctcttc tacgccgccg cgaaggtcga
    23281 gggcgagggg ggcgagtcat tcgtcttcgc ttccgaggcg aaggcgattc tcgcttcggg
    23341 gctggtcaaa cctgagctgg atttggaagg gctcaaccag cagctcacct tcctgtggac
    23401 tccggacccg cacacgctct tccgcggcat ccaccgcctg ccgcccgcgc acgtcctcaa
    23461 gtggcgcgac ggcatctcga cggtgcgcga gtggtgggac gtctccttcg acgagataga
    23521 agagggcaag agcgaagact ggtggcgcga gcgcgtgctc gaaggctcgg ggcacgagtt
    23581 ccggacggac acggacacgg aggtcatgct cgaagcgttc gccgagtggg gcgtcgccgg
    23641 ctcgctcgcg cgcctgaacg gcatgttcgc cttcgccgtc tgggacgagc gggagaggga
    23701 gctgacgctc gcccgcgacc gcctcggcgt caagccgctc ttctacgcgg aggccgcggc
    23761 cgaaggcgga gggggcgagt ccttcgtctt cgcttccgag gcgaaggcga tcctcgcgtc
    23821 ggggctcgtt aagccggaac tcgacctcga agggttcaac cagcagctca ccttcctttg
    23881 gactcccgac ccgcacacgc tcttccgcgg catcaggcgc ctgccgcccg cgcacgtcct
    23941 cacctggcgc gaaggcgagg cgagtgtgcg cgagtggtgg gacgtgtcgt tcgacgaggt
    24001 cgaggagggc cgcggcgagg agtggtggcg cgagcgcgtg ctcgaaaccc tcgaccgcgt
    24061 ggtcgggatg gagatggtgg cggacgtgcc gctcggcgcg ttcctgtcgg gaggcgtgga
    24121 ctcttcggtc gtcgcc
//
LOCUS       DASPKR010000489         3442 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1496073, whole genome shotgun sequence.
ACCESSION   DASPKR010000489 DASPKR010000000
VERSION     DASPKR010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3442)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3442
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1496073"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..198
                     /locus_tag="VD968_13095"
     CDS             <1..198
                     /locus_tag="VD968_13095"
                     /inference="COORDINATES: protein motif:HMM:NF013560.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008241 - peptidyl-dipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M2 family metallopeptidase"
                     /protein_id="HYE15377.1"
                     /translation="NNKEVGARLKQMLAMGASRPWPEALKALTGEDKMDATAILDYYA
                     PLKAWLDEQNKALASPSVASK"
     gene            complement(270..749)
                     /locus_tag="VD968_13100"
     CDS             complement(270..749)
                     /locus_tag="VD968_13100"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HYE15378.1"
                     /translation="MEGRIFQLSRSNGGVPKLAVREARLTAEGLEGDWQQDRRYHGGP
                     ERALCLFSLETIMELQGEGHPIFPGSAGENVTVTGLDWSSLKPGARLALGKEALVEIT
                     SYCSPCKTIAASFVGGDFKRISEKVSPGDSRLYARVLRPGTLAVGQTVRVLNGDSAE"
     gene            complement(770..1417)
                     /locus_tag="VD968_13105"
     CDS             complement(770..1417)
                     /locus_tag="VD968_13105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15379.1"
                     /translation="MKRTVVAVGGFSSDSGKTTLVCELLRALPGWEAVKVSRGHYRSC
                     GRDPQACCVSPLLGEEPTVRSGRAETYAAGKDTGRYWDAGASNVHWAIVTDRQVGAGV
                     ALALGRVSAPGVVVEGNSFLRHVEADYTVMVVRPDALKVKPTARRALRSASSFYLSDD
                     GRGISAEAWEAFERWRREQGEALRRLPVYTRESLPELVGQIRAASLRSAPAAGGL"
     gene            1546..1890
                     /locus_tag="VD968_13110"
     CDS             1546..1890
                     /locus_tag="VD968_13110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15380.1"
                     /translation="MDDEHAEVLRDMEAALGRHGGEATRGCEAEEVAREWLAAGFDDA
                     EEVGDWLAARCFDAEGARALEDAGLTPEQAAVRTRAGRGDYEDTVGFKVTRGDLSLEE
                     ARRIVTSDFWHG"
     gene            2000..2206
                     /locus_tag="VD968_13115"
     CDS             2000..2206
                     /locus_tag="VD968_13115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15381.1"
                     /translation="MFRGSTNSKGGWALAGTAASGRKHASYQVSVARPVNNCQGQTAG
                     VPGAVMGSISLGAAIRPDSTQLKQ"
     gene            2393..2475
                     /locus_tag="VD968_13120"
     tRNA            2393..2475
                     /locus_tag="VD968_13120"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2426..2428,aa:Tyr,seq:gta)
     gene            2481..2552
                     /locus_tag="VD968_13125"
     tRNA            2481..2552
                     /locus_tag="VD968_13125"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2513..2515,aa:Asp,seq:gtc)
     gene            2572..2647
                     /locus_tag="VD968_13130"
     tRNA            2572..2647
                     /locus_tag="VD968_13130"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2608..2610,aa:Pro,seq:tgg)
     gene            2659..2731
                     /locus_tag="VD968_13135"
     tRNA            2659..2731
                     /locus_tag="VD968_13135"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2693..2695,aa:Gly,seq:gcc)
     gene            2743..2815
                     /locus_tag="VD968_13140"
     tRNA            2743..2815
                     /locus_tag="VD968_13140"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2776..2778,aa:Cys,seq:gca)
     gene            2992..>3442
                     /locus_tag="VD968_13145"
     CDS             2992..>3442
                     /locus_tag="VD968_13145"
                     /inference="COORDINATES: protein motif:HMM:NF025637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HYE15382.1"
                     /translation="MTVLNGRVLLLNFSYEPLGTVGVARAMCLVLRGAVLVEEFDGDR
                     VLRSPRKEFRVPSVIRLRTYFNVRRRRQTAGMRRLRIFVRDRFRCQYCGRKLDASRLS
                     LDHIQPRSREGRSVPENLVTACVECNTRKGSRTPEEARMPLLTPQRPL"
BASE COUNT          591 a         1166 c         1115 g          570 t
ORIGIN      
        1 aacaacaagg aggtcggcgc gcggctcaag cagatgctcg cgatgggcgc gagccgcccg
       61 tggccggagg ctttgaaggc gctgaccggc gaggacaaga tggacgccac cgccatcctc
      121 gactactacg cgccgctcaa ggcatggctc gacgagcaga ataaggcgct cgcatctccg
      181 tcagtcgcct cgaaataaac ttcgcgcctt agcgccttcg cgtgacttct tgcgaaggcg
      241 ctaaggcgcg aagagttccg ccatatcggt tattcggcag agtcgccgtt aagcaccctg
      301 acggtctgac cgacggcgag cgtcccaggc cgcagcacgc gcgcgtagag gcgcgagtcg
      361 ccggggctca ccttctcgga gatgcgcttg aagtcgccgc cgacgaacga ggccgcgatg
      421 gtcttgcagg gcgagcagta gctcgttatc tcgaccagag cctctttgcc gagcgcgagg
      481 cgcgcgccgg gcttcaggct cgaccagtcg agccccgtga ccgtcacgtt ctcgcccgcc
      541 gagccgggga agatcggatg cccttccccc tgtaattcca taatcgtttc gagcgagaaa
      601 aggcacagcg cgcgctcagg cccgccgtgg tagcgcctgt cctgctgcca gtcgccttcg
      661 agcccttcgg ccgtcagcct cgcctcgcgg acagcgagct tcggcacgcc cccgttcgag
      721 cggctgagct gaaaaatccg tccttccatc gaaagccctc cgaagtcctt cacaaaccgc
      781 ccgcggcagg cgccgaccgg aggctcgcgg cgcggatttg accgaccaac tccggcaaac
      841 tctcgcgagt atagacgggc agacgccgga gcgcctcgcc ctgctcgcgg cgccagcgct
      901 cgaacgcctc ccacgcctcg gccgaaattc cgcgcccgtc gtccgacagg tagaaggacg
      961 aggctgaccg cagggcgcgc cgcgccgtcg gcttgacctt gagcgcgtcg ggccgaacga
     1021 ccatcacagt gtagtcggcc tcgacgtgtc ggaggaagct gttgccctcg acgacgaccc
     1081 ccggcgcgct cacgcgcccg agcgcgaggg caacgcctgc gcccacctgc ctgtccgtga
     1141 ctatcgccca atgcacgttc gacgcgcccg cgtcccagta gcgcccggtg tccttgcccg
     1201 cggcgtaggt ctccgcgcgg cccgagcgca cggtcggctc ttcgccgagc agggggctca
     1261 cgcagcaagc ctgcgggtct ctgccgcacg agcggtaatg cccgcgcgag accttcaccg
     1321 cctcccagcc cggcagcgcg cgcagcagtt cgcacacgag cgtcgtcttg cccgagtccg
     1381 agctgaagcc ccctacggcg acgacggttc ttttcatctc gagcgcggcc agcacgtcta
     1441 gagttttacc cgttcccgcc ggccaagaca accctcagag gcttggccgc cgctgcgtag
     1501 ccgggttaga tttctgccac tcccaggaaa ggcgggccaa gtctcatgga tgacgagcac
     1561 gctgaggttc tgcgcgacat ggaggccgcg ctcggccggc acggcgggga ggccacgcgg
     1621 ggctgcgagg ccgaggaggt cgcgcgcgag tggctggcgg cagggttcga cgacgcggag
     1681 gaggtcggcg actggctcgc cgcccgctgc ttcgacgccg agggcgctcg cgcgctcgaa
     1741 gacgcggggc tcactcccga gcaggccgcc gttcgcacgc gcgccgggag gggcgactac
     1801 gaagacaccg tcggcttcaa ggtcacgcgc ggcgacctct cgctcgaaga ggcacgacgc
     1861 atcgtcacga gcgacttctg gcacggctga tcgaaacaat atttcgagcc cgataaaaaa
     1921 gtgcttgaca atataaagta atctgctata aatccaccgt cgcacttttc gggcggcgat
     1981 ttctttaggg aaggccggga tgttcagagg ctcgacaaat tctaaaggcg ggtgggcgct
     2041 agccggcacg gcggcctcgg ggcgcaagca cgcctcctat caggtctctg tcgcgaggcc
     2101 cgtcaataat tgtcagggcc agacggcggg cgtccccggc gccgtcatgg gctcgatcag
     2161 cctcggcgcc gcgatacgcc cggatagcac acaactcaag cagtgacact agcgggagcg
     2221 gcctcccgct cccgaatctc gaagaaaaac cgcgagtgga cggagcgggc ctgctctctg
     2281 tggggagcta aaacgggccc gctctttttg ttgtttgata atcgaaatgc cttgtgtggg
     2341 acggggcggg atgcccgccc gcccccgccc gcccgtctta aaaccgaagc gcgcatcaga
     2401 cgccgtaaag gttcggcagc agtctgtaaa gctgtggctc ttcggagcgt ggaggttcga
     2461 gtcctccctg atgcatctgc ggaaccgtgg ccgagaggtt aggcacttcc ctgtcgagga
     2521 agacgatgac ggttcgagcc cgtccggttc cgccttgttt gaaatttacg acggagcgta
     2581 gcctagctgg ttttcaggca ctcgccctgg gagcgagacg acgggggttc gaatccctcc
     2641 gctccgatta cctttcacgt ggacgtagct caacggccca gagcgccggc ccgccacgcc
     2701 ggagacgcgg gttcgagccc cgccgttcac ttccacgacc gcgcacgcgt agccaagctg
     2761 gtaaggcgac ggcctgcaaa accgttaacc gccggttcga gcccggccgc gtgcttgaag
     2821 aaaacgcgaa ggagggtgtc gctcatacgt ttgtactaca ttgcgcgagt attctttcgc
     2881 gtctttacca actgagattc ggctcactgc gagcgggtaa ctcgcgccag cgagattgcc
     2941 tcacccccgc tcgcccttcg actcgcagac ctttagaaag gaggtgtcgg gatgacggtc
     3001 ttgaacggca gggttctcct gctcaacttc tcctatgagc cgctcggcac cgtgggggtc
     3061 gcgcgggcca tgtgcctcgt gctgcggggc gctgttttgg tggaggagtt cgacggcgac
     3121 cgcgtgctgc gctcgccgcg caaagagttc cgcgtgccga gcgtcatacg cctgcgcact
     3181 tacttcaacg tccgccgccg ccggcagacg gccggcatgc ggcgcctgcg catcttcgtg
     3241 cgcgaccgct tccgctgcca gtactgcggc cgcaagctcg acgcgtcgcg tctgtcgctc
     3301 gaccacatcc agccgcgctc gcgcgagggc cggtcggtgc cggagaatct ggtgacggcg
     3361 tgcgtcgagt gcaacacgcg caagggcagc cgcacgcccg aggaggcgcg catgcccctg
     3421 ctcacgccgc agcgcccgct cg
//
LOCUS       DASPKR010000490        11221 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_978536, whole genome shotgun sequence.
ACCESSION   DASPKR010000490 DASPKR010000000
VERSION     DASPKR010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11221)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11221
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_978536"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(77..514)
                     /locus_tag="VD968_13150"
     CDS             complement(77..514)
                     /locus_tag="VD968_13150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15383.1"
                     /translation="MCGAESGRFGADKEVEELVRGFESGGLKPDDFSHRGHLAVALWY
                     QLRHPYEEALAVTRRNILAFIARHGVDPKVYSETVTVFWMRRARAFLESRGAARPVHE
                     LANALADECGDSRLINEYFSKELLDTDGARRGWLEPDLKPLDF"
     gene            complement(632..898)
                     /gene="rpsT"
                     /locus_tag="VD968_13155"
     CDS             complement(632..898)
                     /gene="rpsT"
                     /locus_tag="VD968_13155"
                     /inference="COORDINATES: protein motif:HMM:TIGR00029.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HYE15384.1"
                     /translation="MPNHKSAEKRVRQNEKRREVNRGNRGRLRTGIKKLRAALEGDDT
                     GAVQALLPETISLIDKAVQKGVLHRNAAARYKSRLTVRTNAAGK"
     gene            1271..2131
                     /locus_tag="VD968_13160"
     CDS             1271..2131
                     /locus_tag="VD968_13160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15385.1"
                     /translation="MKRLSPFVTLSALVVTFLAFAPASLAQTFTSIDYPGAAQTRANS
                     INAAGDIVGTYETATGVQHGFLLSKGGTYTSIDYPGAIRTNANGIAYNGKIVGSWRGT
                     NNRQHGFILYKGNFTALDYPGSFGTSARSITPSGDIVGTYVDALGVTRGFLYSRGDFS
                     TIEVPGSPQTEPKSINAAGDIVGFYDDASDDRHGFLLSDGEFTTIDVPGAVRTEAWSI
                     NSSGAIAGFYTDSVGITHGFTLIKGAFATIDYPGTTSTVVREINNSSKKMVGIYKDGA
                     NKDHGFLLSN"
     gene            2411..3364
                     /locus_tag="VD968_13165"
     CDS             2411..3364
                     /locus_tag="VD968_13165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006681752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HYE15386.1"
                     /translation="MKKIELPPRAIETLFGVHDQNIKYLESLLDVRVDARGSDLTVDG
                     DPRDVETVGRILEDFGELFREGKTFTDRELREAFSQIAEDRAYSLRDYFTKARFNPTG
                     KKQVAPKSANQRRYIEAIQSNDIVFGIGPAGTGKSYLAVAMAIQALVQKQVSRIILAR
                     PAVEAGERLGFLPGDLQEKVDPYLRPLYDALFDLMEAERVTKMLEKRIIEVAPLAFMR
                     GRTLAEAFIILDEAQNTTSEQMKMALTRIGFGSKAVITGDVTQIDLPTGKRSGLIEAE
                     RILSKVEGIEFVYFTDKDVVRHRLVQMIIRAYEEQTAKGNG"
     gene            3406..3834
                     /gene="ybeY"
                     /locus_tag="VD968_13170"
     CDS             3406..3834
                     /gene="ybeY"
                     /locus_tag="VD968_13170"
                     /inference="COORDINATES: protein motif:HMM:TIGR00043.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HYE15387.1"
                     /translation="MIEVVNRQRKLPLDCERWREFAGRALRVAPGAEGAGATVAFVSD
                     RAMRELNRRWRGKRGTTDVLSFPSGQGEFERAEGVNLGDVVISVEQAARQAEEHGLTL
                     ENELEQLVLHGLLHLCGYDHERDSGEMDALELRLRRRLRI"
     gene            3914..5227
                     /locus_tag="VD968_13175"
     CDS             3914..5227
                     /locus_tag="VD968_13175"
                     /inference="COORDINATES: protein motif:HMM:NF013741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HYE15388.1"
                     /translation="MGTGLEIGLTCALLFALAFLATIDMAFGQLSDVGLRRLITERQG
                     GSAAFLGEIVENRARFSFTINAVIQVLLVAVAVLVTSMSYKLFDVQRRFLLFAFFIGL
                     ALTIVFRQVVPRLLSTRNPERTLLATLPLLRPFYGALSVITTPRQVAAERSARRSSDP
                     HVTQAAADAQGDDDDEDDDGGLQALIDVGEQEGILEEEEGELIQSIVKLGETRAGEVM
                     TPRTDIVALPITATVREARDLMVESKYSRLPVYREQIDDVEGIIYVRDLLSYWAEGRE
                     GDSIGPLLRPAYFVPETKTLDELLEEMQKAHVQLALVIDEYGGLAGLVTVEDIVEEIV
                     GEIEDEDIEGEDIVEIVEADEGYYEVLGSTEVGKIERLFGLEIEDDDFTTIAGLVIDE
                     AGMVPQPGARLSLRGLDVEVLEADERRIGRLRLRRAEANGEGPGE"
     gene            5233..5655
                     /locus_tag="VD968_13180"
     CDS             5233..5655
                     /locus_tag="VD968_13180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15389.1"
                     /translation="MGDAAAKREARGATIAALTASAVVLTLLSCASSGCREFLTGSKE
                     SPNRAYTAGSFVRKCGGEQGGSLTHVNLHDGMGTPPPGLNGTITSGEVFAAEGSFNVK
                     LTWKGNGELLVGCEGCAGRKVTKRESAWRDVKISYAEK"
     gene            5706..6842
                     /gene="speY"
                     /locus_tag="VD968_13185"
     CDS             5706..6842
                     /gene="speY"
                     /locus_tag="VD968_13185"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: protein motif:HMM:NF001980.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HYE15390.1"
                     /translation="MAKRKSKFLSGRRIDPRPITGDFPLADLIDETFLAYNAARLREA
                     CQLFARKMLEPDVTVGLSITGALTPAGLGISALIPLMRAGFVDWIITTGANLYHDTHF
                     GIGLSLHQGSTAVSDVVLREEEVVRIYDIFFDYSVLLDTDAFFRRLIEGEEFQRPMST
                     AEFHHLCGKYVHERGRKLGLEDKSFLAAAYELGVPVYTSSPGDSSIGMNVAAKALQGN
                     KLAFDPSADVNETAAIVLAAKRGAIHGRGDRGRKHGGKSAVFILGGGSPKNFMLQTEP
                     QIQEVLGIDERGHDYFLQITDARPDTGGLSGATPGEAVSWGKVDPDRLPDAVVCYADS
                     TIALPLLTAYALARHEPRELKRLYDRREELMGLLLEEYAKSERR"
     gene            6865..7341
                     /locus_tag="VD968_13190"
     CDS             6865..7341
                     /locus_tag="VD968_13190"
                     /inference="COORDINATES: protein motif:HMM:NF015639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HYE15391.1"
                     /translation="MVKTVRDDQPRVYFDCNKCPAYCCSIYERVQVSGRDIRRLAKYF
                     GVSYETARRRYTKQWENERVLKRVEDTIFEETCMFLDQETRGCTIYHARPAVCREYPD
                     RARCAYYDVLQFERRQQADPSVVPLVQITFRETKDETVERGNGRERVWEWEPERKR"
     gene            7369..7590
                     /locus_tag="VD968_13195"
     CDS             7369..7590
                     /locus_tag="VD968_13195"
                     /inference="COORDINATES: protein motif:HMM:NF041655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MM0924 family protein"
                     /protein_id="HYE15392.1"
                     /translation="MRELLLKLVGKKVDLFCGGTSALHGKVVKVEESVAHLVGEDDRM
                     FYVAIERIIVLSESKESEQRAGFTTGFVK"
     gene            complement(7595..8260)
                     /locus_tag="VD968_13200"
     CDS             complement(7595..8260)
                     /locus_tag="VD968_13200"
                     /inference="COORDINATES: protein motif:HMM:NF013073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HYE15393.1"
                     /translation="MSFSKLFPCALAALFAAALTPALTTRAQTAQATRPRQTGAPQQT
                     VTATDPSGRTRLENDLTVPYVVGESGDEEEPAAYGEFSRPKETGLVERLMFAAIEERL
                     GVPYRLGSEGPNRYDCSGFVWSVFQQAGVDFERGSARTFWSRFEPAGEADRYKFGTLV
                     FFNNLRHVGIVADAEGFYHASTSRGVVYSRFGDYWSKRISGFRRVPLPRGAGPTLVAS
                     AAR"
     gene            8567..10009
                     /locus_tag="VD968_13205"
     CDS             8567..10009
                     /locus_tag="VD968_13205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15394.1"
                     /translation="MLFVESRVADRFVEKDSRLALLEALAERGHEPLLRASRLHLFEQ
                     ALAGAEHARELERLVAEASDAEGEVPYVRGDVFCAEGYSHFVVFGDEEAGGLRAGVAY
                     GADTPDAAEKLEEFCRAVEGAVRAAARGAGAEGEVDGTAAEAARIEWRARGGSAREAL
                     MRFASAGGGDDSPSVSTPRGVTAERLRAGELLEDEQARTLLHRLSEAQADGRLSEMLA
                     PGARGAGRDELVARLAGAGLVKREILVSCRRDGHSLFRLPSSDALAIVTASNAVCSEC
                     GTAIADERAEETVTPTPLADSMLKDGAWMVNSLRATLRELGLAGGDVAARPHEEGGAR
                     MFANVCGEPFMFVLRDGDFTGAHARRALEGEAESHATRLVVVATGSVQDEARSRLREH
                     ARRRSRAGAEAEVIFVEGLSNAHAELRRAVERVSQEALARELYELDASAGFSVGRMLA
                     ARQRLAQRRGALEDLAASAAGALSGSLREF"
     gene            10160..>11221
                     /locus_tag="VD968_13210"
     CDS             10160..>11221
                     /locus_tag="VD968_13210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15395.1"
                     /translation="MNNRSFVLLSLTACVFAPSAVARAQAPDPSPAHTRPRTVSAAQA
                     RPTATPVVTQTPAQGTAPARVTAPPSTTQQPAGATAPAQEGQAQSPAVFVPAVPLKPA
                     QPISYTKFRARVADAQRLLKSRLTLTASSTPPLTIVTLAALDPDTSRVHLLTLPKETF
                     LRRGSETVMTTNEGLTVRLQVLRPNYVNTAVVVSEAATGRQLTPLVVEYPIEKFGRFR
                     EMAYYTSAHPALLSPDLVKHGQSYVRNMLDLAAKRLKDKGKVISPELVDIAERLCVVE
                     HVDHGRFRAEDRKRLYEEVYALFALNELDTYRYSVSSAGAGGMVQMIPATYATVRRMH
                     PSVGLNPDFVAGMRNHGNAL"
BASE COUNT         1960 a         3717 c         3777 g         1767 t
ORIGIN      
        1 tcaagacctc gctcggcggc ggagggccga agggcgcccg cctccagctc gaaatgctcg
       61 tctgcgagct gtccgcttaa aagtcgagcg gcttcaggtc gggctccaac cagccgcgcc
      121 gagccccgtc ggtgtcgagc aactccttgc tgaaatattc gttgatgagg cgcgagtcgc
      181 cgcactcgtc ggccagtgcg ttcgccagct cgtgcacggg gcgcgcggcg ccgcgcgatt
      241 cgaggaaggc acgggcgcgc cgcatccaaa agaccgtgac ggtctcgcta tagactttcg
      301 ggtcaacgcc gtggcgcgcg atgaaggcga gtatgttgcg ccgcgttacg gccagcgcct
      361 cctcgtaagg gtggcggagc tgataccaga gcgccacggc gagatgaccg cggtggctga
      421 agtcgtcagg cttgagcccg cccgactcga acccgcgcac caactcctcg acctctttgt
      481 cggcgccgaa gcgcccggac tccgccccgc acatctctgt aagcctcccg tcgcccgccc
      541 cgcccggcgg gcgtgaaaaa gcgaggcagg ccgaaacccg ttcggcctgc ctcgcccgtg
      601 cctgtcttga aaacttttag aacccgcccg actacttacc ggccgcgttc gtccgcaccg
      661 tcaggcgcga cttgtagcgc gccgccgcgt tgcggtgcag cactcccttc tggacggcct
      721 tgtctatgag cgaaatcgtc tcgggcagga gcgcctgaac ggcgcccgtg tcgtcgcctt
      781 cgagcgccgc gcgcagcttc ttaatccccg tgcgcaggcg gccgcggttg ccgcggttga
      841 cctcgcggcg cttctcgttc tgccgcaccc gcttctctgc tgacttgtga ttaggcattt
      901 ccttactctt aactccgtta ttacaggctt gatgttaaag tcggcgcgca cggtggagaa
      961 cctggccgtg cgcgcaaagc ccaaagtata ggttccgccc cggccggtgt caaggcggag
     1021 ggccgcgcgc gcctcaagaa agagattgga aaaggcgggg tgttagttgt attatccgct
     1081 tgcacaaaag caaggggttt aaccggcggc cgccttcgca gactacctcg cgcggtcgca
     1141 gggggcgttt gaagcgtccc cgccacgccc ggacaaaccc ttatttccca gagaatttgg
     1201 gaaagttcgt atcgcgcaag ccgcctcgcc gcgtttgtct atttgcgttt tcaagaaagg
     1261 aatgcccccc atgaaacgcc tgtccccctt cgtcaccctg tcggccttag tcgtaacgtt
     1321 cctggctttc gccccggcct cccttgccca gacattcaca tccatagatt acccgggcgc
     1381 cgcccagacg cgcgccaaca gcatcaacgc ggccggcgac atagtcggca cttacgagac
     1441 ggccaccggc gtccagcacg gcttcctgct cagcaagggc ggcacctaca cctccataga
     1501 ctaccccggc gccatcagga caaacgccaa cggcatcgcc tacaacggca agatagtcgg
     1561 gagctggcgc ggcacgaaca acaggcagca cggcttcatc ctctacaagg ggaacttcac
     1621 cgctttagac taccccggct cgttcggaac ttcggcgcgc tccatcactc cctcgggcga
     1681 catagtcggc acctacgttg acgcgctcgg cgtcacgcgc ggcttcctgt acagcagggg
     1741 cgacttcagc acgatagaag tccccggctc cccgcagacc gagccgaagt ccatcaacgc
     1801 ggccggcgac atcgtgggct tctacgacga cgcctccgac gaccggcacg ggttcttgct
     1861 gagcgacggc gagttcacca ccattgacgt gcccggcgcc gtccgcacgg aggcctggag
     1921 cataaactct tccggcgcca tcgccggctt ctacacggac tcggtcggca tcacgcacgg
     1981 cttcacgctc atcaaagggg ccttcgcgac catagactac ccgggtacca cttccaccgt
     2041 cgtccgcgag ataaacaact cgtccaagaa gatggtcggg atatacaagg acggcgccaa
     2101 caaagatcac gggttcctgc tcagcaactg acgcgcgccg cgcccgcccc acagagcgcc
     2161 agggcgcggg cgagagcgcc gaaccgaagg aggaaggagg gggccgcggg ggcttttagc
     2221 ctcccgcggc cccctgccaa tttccccgcg aaggccgccc cggccgcctc ccgcccctcg
     2281 ttgacacccc cgccgcgcgt gttgtagcgt cgtcacgtta aaggcccgga cagcttacac
     2341 caccctttct gaggcacccc gcggccgccg cgcgcggccg ccccgcttga cgaggagaag
     2401 gtagcgactt ttgaagaaga tcgagcttcc gccgcgcgca atcgagacgc tcttcggcgt
     2461 ccacgaccag aacatcaagt acctcgaatc cctcctcgac gtgcgcgttg acgcgcgcgg
     2521 ctccgacctg acggttgacg gcgacccgcg cgacgtcgag accgtcgggc gcatactcga
     2581 agacttcggc gagcttttcc gcgagggcaa gaccttcacg gatcgcgagc tgcgcgaggc
     2641 cttctcgcag atagccgaag accgcgctta ctccctccga gactacttca cgaaggcgcg
     2701 cttcaacccc acgggcaaga agcaggtcgc gcccaagtcc gccaaccagc gccggtacat
     2761 cgaggccata cagtcgaacg acatagtctt cggcataggc ccggccggca cgggcaagag
     2821 ctacctcgcc gtcgcgatgg cgatacaggc cctcgtccag aagcaggtga gccgcatcat
     2881 cctcgcccgc cccgccgtcg aggccggcga gcgcctcggc ttcctccccg gcgatctaca
     2941 ggagaaggtt gacccgtacc tccgccccct ctacgacgcc ctcttcgacc tcatggaggc
     3001 cgagcgcgtc accaagatgc tcgagaagcg catcatcgaa gtcgcccccc tggccttcat
     3061 gcgcggcaga acgttggcgg aggccttcat catcctcgac gaggcgcaga acactacgag
     3121 cgagcagatg aagatggcgc tgacgcgcat agggttcggc tcgaaggcgg tgataacggg
     3181 cgacgtgacg cagatagacc tgccgacggg caagcgcagc ggcctcatag aggccgagcg
     3241 catcctctca aaagtcgagg gcatcgagtt cgtctatttc acggacaagg acgttgtgcg
     3301 ccaccgcctc gtgcagatga tcatacgcgc ctacgaagag cagaccgcga agggcaacgg
     3361 ctgatgccgc gacggcccgc gccgcccccc gccccgcccc aagcgatgat cgaagtcgta
     3421 aaccgacagc gcaagctgcc tctcgactgc gagaggtggc gcgagttcgc ggggagggct
     3481 ttgagggtgg cgccgggggc cgaaggggcg ggcgcgaccg tggcgttcgt gtcggacagg
     3541 gcgatgaggg agttgaacag gcgctggcgc gggaagaggg ggacgacgga cgtgctgtcg
     3601 ttcccgtccg ggcagggcga gttcgagcgc gccgagggcg tcaacttagg cgacgtggtc
     3661 atctcggtcg agcaggcggc gcggcaggcc gaggagcacg ggctcacttt ggagaacgag
     3721 ttggagcagt tggtgctgca cgggctcctg cacctgtgcg gctacgacca cgagcgggac
     3781 tcgggcgaga tggacgcgct ggagctgcgc cttcgccgcc ggctccgcat ctgaattcgg
     3841 ggcggacgtt aaatcgtaaa ccgcggatgg gtttgtctat ttgcggctta cgatttacga
     3901 tttacggcgc tttatgggaa cggggctgga aatcgggctg acgtgcgcgc tgctcttcgc
     3961 gctggctttt ctggcgacga ttgacatggc gttcgggcag ctgagcgacg tggggctgcg
     4021 gcgcctcatc acggagcggc agggcgggag cgccgccttc ctcggcgaga tagtcgagaa
     4081 ccgcgcgcgc ttcagcttca ccatcaacgc cgttatacag gtcttgctcg tcgccgtggc
     4141 ggtgctcgtc acctccatgt cctacaagct cttcgacgtg cagcgccgct tcctgctctt
     4201 cgccttcttc atagggctcg cgctcacgat agtcttccgt caggtcgtgc cgcgcctgct
     4261 ctcgacgcgc aaccccgaga ggacactgct cgcgacgctg ccgctgctcc ggcccttcta
     4321 cggcgctctc tcggtcatca cgaccccgag gcaggtggca gccgagcggt cggcgcgccg
     4381 ctcctctgac ccgcacgtga cgcaggcggc cgcggacgcg cagggggacg acgacgatga
     4441 agacgacgac ggcggcctcc aggcgctcat agacgtgggc gagcaggagg gcatactcga
     4501 ggaggaagag ggcgagctca tacagtccat cgtcaagctc ggcgagacgc gagcgggcga
     4561 ggtgatgacg ccgcgcacgg atatcgtggc gctcccgatt acggccacgg tgcgcgaggc
     4621 gcgcgacctg atggtcgagt cgaaatactc gcgcctgccc gtctatcgcg agcagattga
     4681 cgacgtggag gggataatct acgtccgcga cctgctaagt tactgggccg aggggcgcga
     4741 gggcgactcc atcgggccgc tgctgcggcc cgcctacttc gtccccgaga ccaagaccct
     4801 ggacgagctg ctggaggaga tgcagaaggc gcacgtgcag ctcgcgctgg tcatagacga
     4861 gtacggcggg ctcgccggcc tcgtcaccgt cgaggacata gtcgaagaga tagtcggcga
     4921 gatagaggac gaggacatag agggcgagga tatagtcgag atagtcgagg ccgacgaggg
     4981 ctactacgag gttctcggct cgaccgaggt cgggaagata gagcgcctgt tcgggctcga
     5041 gatagaggac gacgacttca cgaccatcgc gggactggtc attgacgagg ccgggatggt
     5101 gccgcagccg ggcgcgcgac tatcgcttcg cggcctcgac gttgaggtgc tcgaagccga
     5161 cgagcgccgc ataggccgcc tgcggctgcg ccgcgcggag gctaacggcg aagggccggg
     5221 ggagtgaagg gagtgggcga cgcggccgcg aagcgggagg cgcgcggcgc gaccatcgcg
     5281 gccttaacgg cgtcggcggt cgtgctcact ctcttgtcgt gcgcctcttc gggctgccgg
     5341 gagtttctga cgggctcgaa ggagtcgccg aacagggcct acaccgccgg ctccttcgtc
     5401 cgtaagtgcg ggggcgagca gggcgggagc cttacgcacg tgaacctgca cgacggcatg
     5461 ggcacgccgc cgccgggctt gaacggcacg ataacgagcg gcgaggtctt cgcggccgaa
     5521 ggcagcttca acgtcaagct gacgtggaag ggcaacggcg agctcctcgt cgggtgcgag
     5581 ggctgcgccg ggcggaaagt aacgaagcgc gagtcagcct ggcgcgacgt gaaaatctct
     5641 tacgcggaga agtgacgggg gcgggcgccg gcgcggcccg aaaaattttg agcgacgggg
     5701 gagagatggc gaagaggaag agcaagttcc tttcggggcg gcgcatagac ccgcgcccca
     5761 tcacgggcga cttcccgctc gcagacctga ttgacgagac gttcctggcc tacaacgctg
     5821 cccgcctgcg cgaggcttgc cagctcttcg cccgcaagat gttagagccg gacgtgaccg
     5881 tcgggctctc tataacgggc gcgctcacgc ccgcggggct agggatttcc gcgctcatcc
     5941 cgctcatgcg cgccggcttc gttgactgga taatcacgac gggcgcgaac ctctaccacg
     6001 acacgcactt cggcataggg ctctcgctcc accagggctc gaccgcagtc tccgacgttg
     6061 tgctgcgcga ggaggaggtc gtccgcatct acgacatctt cttcgactac tcggtgctgc
     6121 tcgacaccga cgccttcttc cgccgcctaa tcgagggcga ggagttccag cggccgatgt
     6181 ccacggccga gttccaccac ctctgcggca agtacgtcca cgagcgcggg cgaaagctcg
     6241 ggctcgaaga caagtcgttc ctcgccgcgg catacgagct gggcgtccct gtctatactt
     6301 cgagccccgg cgactcttcc atcggcatga acgtcgccgc caaggccctt caggggaaca
     6361 agctcgcctt cgacccgtcg gccgacgtga acgagaccgc ggcaatcgtg ctcgccgcca
     6421 agcgaggcgc catacacggc cggggcgacc gcgggcgcaa gcacggcggc aagtccgcgg
     6481 tcttcatcct cgggggcggg agccccaaga acttcatgct ccagaccgag ccgcagattc
     6541 aggaggtcct ggggattgac gagcgcggcc acgactactt ccttcaaatc accgacgcgc
     6601 ggcccgacac gggcggcctt tcgggcgcga cgccgggcga ggccgtctcc tggggcaagg
     6661 ttgaccccga ccgcctgccc gacgccgtcg tctgctacgc cgactcgacg atagcgctgc
     6721 cgcttctgac cgcctacgcg ctcgcgcgcc acgagccgcg cgagctgaag cggctctacg
     6781 accgccgcga agagttgatg ggcctgctgc tcgaagagta cgcgaagtcc gagagaaggt
     6841 agcgagcgtt cgagggggga atcaatggtt aagactgtca gggacgacca gcctcgggtc
     6901 tatttcgact gcaacaagtg cccggcctac tgctgctcga tctacgagcg cgtgcaggtg
     6961 agcggccgcg acatacgccg gctcgcgaaa tacttcggcg tctcctacga gacggcgcgc
     7021 cgccgctaca cgaagcagtg ggagaacgag cgcgtgctca agcgcgtcga ggacacgata
     7081 ttcgaggaga cctgcatgtt cctcgaccag gagacgcgcg gctgcaccat ctaccacgca
     7141 aggcccgccg tctgccgcga gtaccctgat cgggcgcgct gcgcctatta cgacgtccta
     7201 cagttcgagc gccgccagca ggccgacccg agcgtcgtgc cgctcgtgca gataaccttc
     7261 cgcgagacca aagatgagac ggtcgagcgc ggcaacggcc gcgagcgcgt ctgggagtgg
     7321 gagccggagc gcaagcgctg agcgaatcta agaaggggtg tgtgaaggat gcgagagctt
     7381 ctgttgaagt tggtggggaa gaaggttgac ctcttctgcg gcggcacgtc ggcgctgcac
     7441 gggaaggtcg tgaaggtcga ggagtccgtg gcccacctgg tgggcgagga cgaccgcatg
     7501 ttctacgtcg ccatagaacg catcatcgtc ctcagcgagt cgaaggagag cgagcagcgc
     7561 gcgggcttca cgacaggctt cgtgaagtga acgctcacct cgccgccgag gccacgagcg
     7621 tcggccccgc gccgcgcggg agcgggacgc ggcggaagcc ggagatgcgc ttcgaccagt
     7681 agtcgccgaa gcgcgaatag acgacgccgc ggctggtcga ggcgtggtag aagccctcgg
     7741 cgtcggcgac gatgccgacg tggcgcaggt tgttgaagaa gaccagcgtc ccgaacttat
     7801 acctgtcagc ctcgcccgcc ggctcgaagc gcgaccagaa ggtgcgcgcc gagccgcgct
     7861 cgaagtcaac gcccgcctgc tggaacacac tccagacgaa gccggaacag tcgtaacggt
     7921 tcggcccttc cgagccgagc ctgtaaggca cgcccagccg ctcctcaatc gcagcgaaca
     7981 tcagacgctc gaccagcccc gtctccttcg gccgcgagaa ctcgccgtag gcggcgggct
     8041 cttcctcgtc gcccgactcg cccacgacgt acggcacggt taaatcgttt tcgagccgcg
     8101 tgcggcccga agggtctgtc gccgtgacgg tctgctgcgg ggcgcccgtc tggcgcgggc
     8161 gcgtggcctg ggcggtttgt gctcgggtgg tcagcgcggg tgtcaaggcc gcggcaaaga
     8221 gcgccgcgag cgcgcagggg aacagcttgg aaaaagacat taagggggag agtctcctct
     8281 acctgaaaac tagaaattgc tttgggtatt tcttttttgg ggtgggcggc cggccggatg
     8341 gggccgggcg cgcaaaagtc atcctaacca aacgaagcag cccccacaag cggcaatgtg
     8401 actgtttcgt gacaacgcaa tctgagaaga gggcgcggcg gactgaaagg gggcgcgata
     8461 tgcttcaagt tgaaggcagt gtagcgagtc ggtacggctt ttgtcgtgga atttcacgcg
     8521 cgcggcgtga tagcatgcgc cgccgaaagg ggagaacgac ttaagtatgc tgttcgtcga
     8581 aagccgcgtg gccgaccgtt tcgtcgagaa ggattcgcgc ttggcgctcc tggaagcgct
     8641 cgcggagcga ggccacgagc cgctgctgcg cgcctcgcgc ctgcacctgt tcgagcaggc
     8701 gctcgcgggg gctgagcacg cccgcgagct tgagcgcctc gtggccgagg cttcggacgc
     8761 agagggcgaa gtgccttacg tgcgcggcga cgtgttctgc gccgagggct actcgcactt
     8821 cgtcgtcttc ggcgacgagg aggctggcgg cctgcgcgca ggcgtcgcat acggcgccga
     8881 tacgcccgac gccgcggaga agctcgaaga gttctgccgc gcagtcgagg gggctgtgcg
     8941 cgcggccgcg cgcggggcgg gcgcggaggg cgaagttgac ggcaccgccg ccgaggcggc
     9001 ccgaatagag tggcgtgcgc gcggcggctc tgcgcgcgag gctctaatgc gtttcgcttc
     9061 cgccggcggg ggcgatgact cgccgtcggt ttcgacgccg cgcggcgtca ctgcggagcg
     9121 tctgcgcgca ggcgagcttc tcgaagacga gcaggcgcgc acactcttgc atcgcctgag
     9181 cgaggcgcag gcggacggcc gactgtctga aatgctcgcg cccggcgcgc gcggcgcggg
     9241 ccgcgacgag ttggtggcga ggctcgcggg cgccggcctc gtcaaacggg agattctcgt
     9301 cagttgccgc agggacggcc actcgctctt ccgcctgccc tcttcggacg cgctcgcgat
     9361 cgtgacggcg agcaacgccg tgtgcagcga gtgcggcacg gccatcgcgg acgagcgcgc
     9421 cgaagagacg gtgacgccta cgccgctcgc cgactcgatg ctgaaggacg gggcgtggat
     9481 ggttaacagc ctgcgggcga cgctgcgcga gcttgggctg gcgggcgggg acgtggccgc
     9541 ccgcccgcac gaagaaggcg gcgcgcgtat gttcgcgaac gtgtgcggcg agcccttcat
     9601 gttcgtgctg cgcgacggtg acttcacggg cgcgcacgcg cggcgcgcgc tcgaaggcga
     9661 ggcggagtcg cacgccacgc gcctcgtcgt cgtcgcgacg gggagcgtgc aggacgaggc
     9721 ccgctcgcgg ctgcgcgagc acgcccgccg ccgctcgcgc gctggcgcgg aggcggaagt
     9781 catcttcgtc gaagggctct cgaacgctca cgccgagctt cgccgcgcag tcgagcgcgt
     9841 ctcgcaggag gcgctcgcgc gcgagcttta cgaattggac gcgagcgccg gcttctccgt
     9901 cggccggatg ctcgccgcgc gccagcgcct cgcgcagagg cggggggcgc tcgaagacct
     9961 cgcggcctcg gccgccggcg cgctatctgg cagcctccgc gagttctaag cgtgcgtggc
    10021 cgctttccgt ccacggcggg caaattgatt ttagaagcct ttaagtggtt gacaacccgc
    10081 tcccgcgcgg gcgaatctta ggcaacaacg cccgcgaccc gttagcgcgg gcggcgctcc
    10141 cggccccaaa gttttgacta tgaacaaccg ctctttcgtg cttttgagtt tgacggcctg
    10201 tgtgttcgcg ccctcggcgg tcgcgcgagc gcaggcgccc gacccttcgc cggcccacac
    10261 gcgcccgcgc acggtaagcg ccgcgcaggc gcggccgact gccacgccgg tagtgacgca
    10321 aacccctgcg caagggacgg cgcccgcgag ggtgacggcg ccgccgtcaa cgacgcagca
    10381 gccggcaggc gcaacagcgc ccgcgcagga agggcaggcg cagtcgcccg cggtcttcgt
    10441 cccggccgtc ccgctcaagc cggcgcagcc gatctcttac acgaagttcc gcgcgcgcgt
    10501 cgccgacgct cagcgccttc tcaagtcgcg gctgacgctt acggcctcct cgacgccgcc
    10561 gctcaccata gtcacgctcg ccgcgctcga cccggacact tcgcgcgtgc acctgctgac
    10621 gctgccgaag gagactttcc tcaggcgcgg ctccgagacg gtgatgacga cgaacgaggg
    10681 cctgacggtg cggctgcaag tcctgcggcc gaactacgtc aacacggccg tcgtcgtctc
    10741 ggaggcggcg acgggcaggc aactcacgcc gctcgtcgtc gagtacccga ttgagaagtt
    10801 cgggcgcttc cgcgagatgg cctactacac ttcggcccac ccggcgctgc tctcgcccga
    10861 cctcgtcaag cacggccagt cctacgtccg caacatgctc gacctggcgg ctaagcgcct
    10921 gaaggacaag ggcaaggtca tctcgcccga gctggttgac atagccgagc ggctctgcgt
    10981 cgtcgagcac gttgaccacg gccgcttccg cgccgaagac cgaaagaggc tctacgagga
    11041 ggtctatgcg ctcttcgccc tgaacgagct cgacacctac cgctactccg taagctcggc
    11101 gggcgcgggc ggcatggtgc agatgatacc cgcgacctac gcgacggtca ggcgcatgca
    11161 cccgtcggtg ggcctcaacc ccgacttcgt cgcgggcatg cgcaaccacg gcaacgccct
    11221 c
//
LOCUS       DASPKR010000491         2713 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1365765, whole genome shotgun sequence.
ACCESSION   DASPKR010000491 DASPKR010000000
VERSION     DASPKR010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2713)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2713
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1365765"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1360
                     /locus_tag="VD968_13215"
     CDS             <1..1360
                     /locus_tag="VD968_13215"
                     /inference="COORDINATES: protein motif:HMM:NF042645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6600 domain-containing protein"
                     /protein_id="HYE15396.1"
                     /translation="EVVLSRLDPSYAGGLLDDYYGYRYPDTYDGRYSDYDAYLSDPYY
                     YDPYRRYASYRYVPEAIPGAWELDAYGDWRQLSGYGYAWSPRVADGWAPYREGRWVMD
                     DPYGLTWVSSEPWGYAPYHYGRWVSVNNQWYWVPEGAGSRPAYSPALVAFLPLSEAGQ
                     VGWVPLAPGDPYVSTYYDAEWRPHYVGEYVEPERVVNFGVPGAVTVVPAEYFGREIDR
                     RVVVEPGERAFKGARPVLDPLSVAMLRQAALTRAVERRGFVLPPGLAKRLEETRVYAG
                     AEPPARPFKAGRAARVERVTEKQKGEKLKIKDERRAEVARQPRELPTSGRGRREVTQQ
                     QADDSRGVAREEKEARRAEGRPVRQSPARPEAGPPQHAGRGRGAVEKPVRAPERHAQG
                     ERVGMRPQHQPQAARPQAQRQQGPPQRQPKAERGQGQPGGGGGAHPQKGQGKPGKGKG
                     KP"
     gene            complement(1357..2061)
                     /locus_tag="VD968_13220"
     CDS             complement(1357..2061)
                     /locus_tag="VD968_13220"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15397.1"
                     /translation="MESRGGRALVIKRVHEEARDIRAFDVLPEGAPDAHDLRFTPGQV
                     AHLEIEGAGRAYFAIASAPEDDELEFIVKRTNDPVSRALYEMRPGGRVSLIEIAGHGF
                     SLNEHEGRDLVFVAMGTGVAPLRSALRSVLRHAEDFGQIVVLYGARTPEDFCYRDETE
                     AWKAAGIELRQVVSRPDGYEWAGSTGYVQSLLDNVLPSLSDPVALVCGSREMIEQTRD
                     RLHEMGFTPERILTNY"
     gene            2236..>2713
                     /locus_tag="VD968_13225"
     CDS             2236..>2713
                     /locus_tag="VD968_13225"
                     /inference="COORDINATES: protein motif:HMM:NF024241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE15398.1"
                     /translation="MNRSPLLVILVTVFIDLVGFGIVIPVLPYYLDSPRFNASPVALG
                     LLFSSYSVMQLIFSPILGRWSDKHGRRPVLFLSLLGTGVGFMILGAAQTLTMLFVGRI
                     IAGITGGNISTAQAYIADVTTPENRATWAPTSNSANCSRSSASTRRRRPPSASRSKR"
BASE COUNT          424 a          937 c          950 g          402 t
ORIGIN      
        1 ggaggtcgtc ctctcgcggc tagacccttc atacgcgggc ggcctgctcg acgactatta
       61 cggctaccgc taccccgaca cctacgacgg gcgctacagc gactacgacg cgtacctgtc
      121 agacccttac tactacgacc cgtacaggcg ctacgcgagc taccgctacg tccccgaggc
      181 gataccgggc gcgtgggagc ttgacgccta cggcgactgg cgccagctca gcggctacgg
      241 ctacgcgtgg agcccgcgcg tcgcggacgg ctgggcgccc taccgcgagg gccgctgggt
      301 catggacgat ccctacggcc tgacctgggt ttcgagtgag ccctggggct acgcgcctta
      361 ccactacggc cgctgggtga gcgttaacaa tcagtggtac tgggtgccgg agggcgcggg
      421 ctcacggccg gcctactcgc cggctctcgt cgcattcctg cctctcagcg aggcgggcca
      481 ggtcggctgg gtgccgctcg cgccgggcga cccttacgtg agcacctact acgacgcgga
      541 gtggcggccg cactacgtcg gcgagtatgt cgagcctgag agggtcgtca acttcggcgt
      601 ccccggcgca gtcaccgtcg tcccggcaga atacttcggg cgcgagatag accggcgtgt
      661 cgtcgtcgag ccgggcgagc gcgcgtttaa aggcgcgcgg cccgttctcg acccgctctc
      721 ggtcgcgatg ctgcggcagg cggcgctgac gcgcgccgtc gagcggcgcg gcttcgtact
      781 gccgccgggg ctcgccaagc ggctcgaaga gacgcgcgtt tacgcggggg ccgagccgcc
      841 cgcgcggcct ttcaaggctg gcagggcggc gcgcgtcgag cgcgttaccg agaagcagaa
      901 gggtgagaag ctgaaaatca aggacgagcg gcgcgcggag gtcgcgcgcc agccgcgcga
      961 gctgcccacg tctgggcgcg ggcggcggga agtgacgcag cagcaggccg acgacagccg
     1021 aggcgtcgca cgcgaagaga aggaggcgcg ccgggccgag gggcggcccg tgaggcagag
     1081 ccctgctcgg ccggaggccg gccccccgca gcacgcgggg cgggggcgcg gcgccgtcga
     1141 gaagcccgtg agagcgcccg agcggcacgc gcagggcgag cgcgtcggga tgcgccctca
     1201 gcatcagccg caggccgcgc gcccgcaggc gcaaaggcag caaggcccgc cgcaacgcca
     1261 gccgaaggcc gagcgcgggc aggggcagcc gggcggcggt ggcggcgccc acccccagaa
     1321 gggacagggc aagcccggca agggcaaagg gaaaccttag tagttcgtca ggatgcgctc
     1381 gggcgtgaag cccatctcgt ggaggcggtc gcgggtctgc tcgatcatct cgcgcgagcc
     1441 gcagaccagc gcgacggggt cggagagcga gggcagtacg ttgtcgagga gcgactggac
     1501 gtagcccgtg gagccggccc actcgtaacc gtcggggcgc gagacgacct gtcgcagctc
     1561 gatgcccgcg gccttccacg cctccgtctc gtcgcggtag cagaagtcct cgggcgtgcg
     1621 cgcgccgtag aggacgacta tctgcccgaa gtcttcggcg tgccgcagaa ccgaccgcag
     1681 cgccgagcgc agcggcgcca cgcccgtccc catggctacg aagacgaggt cgcggccctc
     1741 gtgctcattc agagagaagc cgtggccggc tatctcgatg aggctgactc tgccgcccgg
     1801 cctcatctcg tagagggcgc ggctcacggg gtcgttcgtg cgcttgacga tgaactccag
     1861 ctcgtcgtcc tcgggcgcgc tcgcgatggc gaagtaagcg cggcccgcgc cctcgatctc
     1921 gaggtgggcg acctggcccg gcgtgaaccg caggtcgtgc gcgtccgggg cgccctccgg
     1981 cagcacgtcg aatgcgcgga tgtctctggc ctcctcgtgg acgcgtttga ttacgagcgc
     2041 gcggcccccc ctgctctcca taaaaaacct gccgtctcgg actgtctggt tggaacgcgc
     2101 cgagtgtagc gcacgcgccg cgcgagcgtc taggaagcgc gccgccgcgc ggcgcgcgct
     2161 acgcttacag ccccgtcgcc ttctgtgtta aaacagtcgc ctgtcgcaat aatcctttta
     2221 tttcaagacc gactaatgaa ccgctcgccg ctgctcgtca tcctcgtcac ggtcttcata
     2281 gacctggtcg gcttcggcat cgtcataccc gtcctgccct actaccttga tagcccgcgc
     2341 ttcaacgcct ctcccgtagc gctcggcctt ctgttctcgt cctactcggt gatgcagctc
     2401 atcttctcgc ccatactcgg gcgatggtca gacaagcacg ggcggcggcc cgtgctgttc
     2461 ctgagcctgc tgggcacggg cgtcggcttc atgatactcg gcgcggccca gacgctcacg
     2521 atgctcttcg tcgggcgcat catcgcagga attacgggcg gcaacatctc gacggcgcag
     2581 gcctacatcg ccgacgtgac gacgcccgag aaccgcgcga cgtgggcgcc aacgtccaac
     2641 tcggccaact gctctcgcag cagcgcaagt acgaggaggc ggcggccgcc ttccgcgtcg
     2701 cgctcgaaga gga
//
LOCUS       DASPKR010000492         6006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1365841, whole genome shotgun sequence.
ACCESSION   DASPKR010000492 DASPKR010000000
VERSION     DASPKR010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6006)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6006
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1365841"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2098
                     /locus_tag="VD968_13230"
     CDS             <1..2098
                     /locus_tag="VD968_13230"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HYE15399.1"
                     /translation="MMFVGWEGVGLCSYLLIGYYFDRKEAGDASRKAFITNRVGDFGF
                     ALAVFAIIATFGTTQYTAVFESARAYPVELIGSWGLMSWIALGLFIGACGKSAQIPLY
                     VWLPDAMAGPTPVSALIHAATMVTAGLYMVTRTNVIFQHSQTMMLVVAVVGAITALFA
                     ATIGITQNDIKKVLAYSTVSQLGFMFLACGVGAFVIGIFHVMTHAFFKALMFLGAGSV
                     IHAMHHEQDMRRMGGLRKYMPKTYWTFLAGWLAICGVIPLSGFWSKDEILWNAASTEY
                     IPYGWLLWLVATIAATCTAFYMTRLVAMTFWGRERFLEVSAGGQADEAHAQRYADGET
                     AHAASTPSVGDRPHHGPEERVGAAHALETAARGEHEHADDRGRDIHDVHDPGHKGVHG
                     HAHGSVIPHESPRSMWVPLAVLAVLAVIGGFVGVGPAFKFVTGSEHPGGRLNIVTWLD
                     PLIWNPATGGWGKGHVGDEHAAPTEGAGHAAAPAADAHEAPLPTRSDAGGEGALPYGD
                     TGFNLAHSVEHALGSHAASEWFFIIVSLLVAGLGILLGWLFYVRDPRLPAAWAARLGA
                     LYRASFNKYWVDEFYGAAVTRRVMDAARAVYQIDSKALDGAVNGAAALTRRLSSLTGD
                     TDRLVVDGAVNGVAGFIKKLMSPLLRAAQTGLAPNYALVMVIGLVAAVALFFGPDIWA
                     ALKGVFALILHTRGAQ"
     gene            2095..3792
                     /locus_tag="VD968_13235"
     CDS             2095..3792
                     /locus_tag="VD968_13235"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HYE15400.1"
                     /translation="MKIPYLLSVITWLPAVGALAILFAFRKGRTGAVKRFATAWLGLD
                     FVLSLFLVAYDRGLGGMQFIEDYQWIPSIGARYQMGVDGVAVLLILLTTLLGWIAALS
                     SWEYIEKREKEYYALLLFLQTSVLGVFAAMDLFLFFLFFEVSLVPMYFLIGIWGGERR
                     LYAAIKFFLYTLVGSVALLLGMIKMYFLTQDAGLTATIAPATLDAVAGNQEARALIAS
                     SLSEAAANGTGTFNIMFMQALGSVLPMGAMQVLLFFAFALGFAIKVPMWPFHTWLPDA
                     HVEAPTAGSVILAGILLKLGTYGFFRFNLPFFPAASADQSYFFDGAFGVRNVMVILAI
                     IGIIYGALAAMYFVVKRDGDVKKLVAYSSVSSMGIVILGLFSLNPNGLNGAVLHMINH
                     GIYSGALFLLVGIIYERRHTRSVAEFGGLSHVMPGYAAVFLAMAMTAIGLPLLCVFIS
                     EFLALRGAFEASPWWSGWAALGIILNAGYMLWLYQRMFFGNVENEKNARLRDMSRREW
                     AYMLPLVVMSLWIGVYPKPFLDFIGRPVAAVVRHIRPDYPVPARPAQRQTPERAERE"
     gene            3871..5439
                     /locus_tag="VD968_13240"
     CDS             3871..5439
                     /locus_tag="VD968_13240"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HYE15401.1"
                     /translation="MFLLQANTTSLFSVGDLRLIAPELILTLCACAALVVEVLLPRRM
                     SVWTGYVALGGLALAAVSLAVLGYPLWAGEGGGALTGFYNTVRIDPFAVLFKGVFLLS
                     AALTVAVSLRYLDVEGEQRGEYYSLVLFATVGMMFLASGYDLIVLYISLELMALAFYV
                     LVAYARRDRRSNEAGMKYFLLGAFSSGILLYGMSLLFGVAGSTNLADIAPRVAEAVAA
                     SPAAEGATLRPLTLLAMVALAAGLFFKIAAVPFHMWAPDAYQGAPTSVTAFLSTGSKA
                     ASFAFLARLFLDGLGGMRLDWAPLLGLVAAVTIMVGNWAAVTQQNSKRLLAYSSISNA
                     GYLLLGVIAANEWGYKGLIVYLIVYTFMNVGAFGVIISLRRRGILGDEVEDFAGLGQK
                     APGTALMMALFMLSLGGLPGTGGFIGKLFLFGGVIERGRAEGKNWYYWLVAWAALNTV
                     VSFYYYVRFIRAMYIGERAPDRQPLSLSPALQAALVVCAVCVVLIGLYPHPFIKAAEA
                     LVTALAPGGLASVR"
     gene            complement(5457..5639)
                     /locus_tag="VD968_13245"
     CDS             complement(5457..5639)
                     /locus_tag="VD968_13245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15402.1"
                     /translation="MEFPDLSNLGVSRAEFQLRLMEAALRALSLGATLAICGSSLTYF
                     LLWLAEFRRARRSTTR"
BASE COUNT          896 a         2037 c         1941 g         1132 t
ORIGIN      
        1 gatgatgttc gtcgggtggg agggggtggg cctgtgctcc tacctgctca tcggctacta
       61 cttcgaccgc aaggaggcgg gcgacgcctc ccgcaaggct ttcataacta accgcgtcgg
      121 cgacttcggc ttcgcgctcg ccgtcttcgc catcatcgcc accttcggca cgacgcagta
      181 cacagccgtc ttcgagtcgg cgcgcgcata ccccgtcgag ctcatcggct cgtggggcct
      241 catgtcgtgg attgcgctcg ggctcttcat cggcgcgtgc ggcaagagcg cgcagatacc
      301 gctctacgtc tggctgccgg acgcgatggc cgggccaacc cccgtctcgg cgctcataca
      361 cgcggcgacg atggtgacgg ccggcctcta catggtcacg cgcacgaacg taatcttcca
      421 gcactcgcag acgatgatgc tcgtcgtggc cgtcgtcggc gcgatcacag ccctgttcgc
      481 cgcgaccata ggcatcacgc agaacgacat caagaaggtt ctggcctact ccacggtctc
      541 gcagctgggg ttcatgttcc tcgcctgcgg cgtcggcgcc ttcgtcatcg gcatcttcca
      601 cgtgatgacg cacgccttct tcaaggccct catgttcctc ggcgcgggct cggtcataca
      661 cgccatgcac cacgagcagg acatgcggag gatgggaggc cttcggaagt acatgccgaa
      721 gacctactgg actttcctcg cgggctggct cgccatctgc ggcgtaatac cgctttcggg
      781 cttctggtcg aaggacgaga ttctctggaa cgcggcctcg accgagtaca taccctacgg
      841 ctggctgctc tggctcgtag cgacgattgc cgcgacctgc acggccttct acatgacgcg
      901 gctcgttgcg atgaccttct ggggcaggga gaggttcctg gaggtgagcg ctggcgggca
      961 ggccgacgag gcgcacgcgc agcgttacgc cgacggcgag acggcgcacg ccgcctcgac
     1021 gccttcggtc ggcgaccggc cgcaccacgg ccccgaggag cgcgtaggcg ccgcgcacgc
     1081 tttagagacg gccgcgcgag gcgagcacga gcacgcggac gaccgcggcc gggacataca
     1141 cgacgttcac gaccccggcc acaagggcgt gcacggccac gcgcacggct ccgtcatccc
     1201 tcacgagtcg ccgcgctcga tgtgggtgcc gctggcggtg ctcgccgtgc tcgccgtcat
     1261 cggcggcttc gtgggcgtcg ggccggcgtt caagttcgtg acgggctcgg agcaccccgg
     1321 cgggcgtctg aacatcgtca cgtggctcga cccgctcata tggaacccgg cgacgggcgg
     1381 ctggggcaag ggccacgtgg gcgacgagca cgccgccccg acggagggcg caggccacgc
     1441 ggcggcgcct gccgcggacg cgcacgaggc gccgctgcct acgcgcagcg acgcgggcgg
     1501 ggaaggggcg ctcccctacg gcgacacggg cttcaacctt gcgcactcgg tcgagcacgc
     1561 tttgggcagc cacgccgcct cagagtggtt cttcatcatc gtctcgctct tggtcgccgg
     1621 cctcggcata ctgctcggct ggctcttcta cgtgcgagac ccgcgcctgc ccgcggcgtg
     1681 ggcggcccgg ctcggggctc tctaccgcgc gagcttcaac aagtactggg ttgacgagtt
     1741 ctacggcgcg gccgtcacgc gcagggtcat ggatgcggcg cgcgccgtct atcagattga
     1801 ctcgaaggcg ctggacggcg ctgtgaacgg cgcggccgct ctgacgcggc ggctgagcag
     1861 ccttacgggc gacacagacc gcctcgtcgt tgacggcgct gtgaacggcg tggcgggctt
     1921 cataaagaag ctgatgtcgc cgctcctgcg cgcggcgcag acgggcctcg cgcccaacta
     1981 cgcgctcgtc atggtaatcg gcctcgtcgc ggccgtcgcg ctcttcttcg gcccggacat
     2041 ctgggcggcg ctgaagggcg tgttcgcctt gatccttcat acgagaggcg cacagtgaaa
     2101 attccctacc tcctgtccgt catcacatgg ctcccggccg tcggcgcgct cgccatactc
     2161 ttcgccttca ggaagggtcg cacgggcgcc gtcaagaggt tcgcgaccgc gtggctcggg
     2221 ctcgacttcg tgctctcgct cttcctcgtc gcatacgacc ggggcctggg cgggatgcag
     2281 ttcatagagg actaccagtg gatcccgtcc atcggcgcgc gctaccagat gggcgtggac
     2341 ggcgtggccg tgctgctcat actgctgacg acgctgctgg gctggattgc cgcgctctcc
     2401 tcctgggagt acatcgagaa gagggagaag gagtactacg cgctgctgct cttcctccag
     2461 acctccgtgc tcggcgtctt cgccgcgatg gacctattcc tcttcttcct cttcttcgag
     2521 gtctctctgg tgccgatgta cttcctcatc ggcatatggg gcggagagcg gagactttac
     2581 gcggcgataa agttcttcct ctacacgctg gtcgggtcgg tggcgctcct gctcgggatg
     2641 attaagatgt acttcctgac gcaggacgcg gggctgacgg cgacgattgc gcccgcgacc
     2701 ctcgacgccg tggccggcaa tcaggaggcg cgagccctca tcgccagctc gctcagcgag
     2761 gcggccgcca acggcacagg caccttcaac ataatgttca tgcaggcgct cggctccgtt
     2821 ctgccgatgg gggcgatgca ggtgctgctg ttcttcgcct tcgcgctcgg gttcgccata
     2881 aaggtgccga tgtggccttt ccacacgtgg ctgcctgacg cgcacgtcga ggcgccgact
     2941 gccggctccg tcatactcgc cggcatactg ctcaagctag gcacctacgg cttcttccgc
     3001 ttcaacctgc cattcttccc cgcggcctcg gccgaccaga gctacttctt cgacggcgcg
     3061 ttcggcgtgc gcaacgtgat ggtcatactc gccatcatcg gcatcatcta cggcgcgctg
     3121 gccgccatgt acttcgtcgt taagcgcgac ggcgacgtga agaagctcgt cgcttattcg
     3181 agcgtctcct cgatgggcat cgtgatcctc gggctcttct ccctgaaccc gaacgggctg
     3241 aacggcgccg tgctgcacat gatcaaccac ggcatctact cgggcgctct cttcctgctc
     3301 gtcggcatca tctacgagcg gcggcacacg cgcagcgtcg ccgagttcgg cgggctctcg
     3361 cacgtcatgc cgggctacgc ggccgtcttc ctggcgatgg cgatgacggc gatagggctg
     3421 ccgctgctgt gcgtcttcat ctcggagttc ctcgccctgc gcggcgcgtt cgaggcgagc
     3481 ccgtggtggt cgggctgggc ggcgctaggc atcatcctga acgcgggcta tatgctctgg
     3541 ctttaccaga ggatgttctt cggcaacgtc gagaacgaga agaacgcgcg gctgcgcgac
     3601 atgagccggc gcgagtgggc atacatgctg ccgctcgtcg tcatgtcgct ctggataggc
     3661 gtctatccta agccgttcct cgacttcatc ggcaggcccg tcgccgcggt cgtccgccac
     3721 atacgccccg actacccggt gccggcgcgg cccgcgcagc ggcagacgcc cgagcgggcg
     3781 gaaagagagt agatgccggg tgccgggcgc tggacgtcgg cgaaccggct gacactggca
     3841 tccgacatct agcgtcggac gtctgaactt atgtttctcc tccaagcaaa caccacaagc
     3901 ctgttcagcg tcggcgacct ccgcctgata gcgccggagt tgatcctgac cctgtgcgcg
     3961 tgcgcggcgc tcgtcgtcga ggtgctgctg ccgcgccgca tgagcgtctg gacaggctac
     4021 gtggcgctcg gcgggctcgc gctcgccgcc gtgtcgctcg cagtgctcgg ctacccgctg
     4081 tgggccggcg agggcggcgg cgcgctcaca ggcttctaca acaccgtccg catagacccc
     4141 ttcgccgtcc tcttcaaggg cgtcttcctg ctctcggccg cgctgacggt agctgtgtcg
     4201 ctgcgctacc tcgacgttga gggcgagcag cgcggcgagt attactcgct cgtgctcttc
     4261 gccacggtcg gcatgatgtt cctggcgagc ggctacgacc tcatcgtgct ctacataagc
     4321 cttgagctta tggcgctcgc cttctacgtg ctcgtcgcct acgccaggcg cgaccggcgc
     4381 tcgaacgagg cggggatgaa atacttcctg ctcggcgcct tctcctccgg gatactgctc
     4441 tacggcatgt cgctcctctt cggcgtggcc ggctcgacca acctggcaga catagcgccg
     4501 cgcgtagccg aggccgtagc ggcgtcgccc gcggccgagg gcgccacgct ccggcccctg
     4561 acccttctgg cgatggtcgc gctcgcggcc ggcctcttct tcaagatcgc cgccgtgcct
     4621 ttccacatgt gggcgccgga cgcctaccag ggcgcgccca cgtccgtcac ggccttcctc
     4681 tctacggggt cgaaggcggc gagcttcgcc ttcctcgcgc ggctcttcct cgacgggctg
     4741 ggcgggatga ggctcgactg ggcgccgctc ctggggctcg tcgcggcggt gacgataatg
     4801 gtggggaact gggccgcggt gacgcagcag aactcgaaga ggcttcttgc ctactcctcc
     4861 atctcgaacg cgggctacct cctgctcggc gtcatagcgg ccaacgagtg gggctacaag
     4921 gggctcatcg tctatctcat cgtctatacg ttcatgaacg tcggcgcctt cggcgtcatc
     4981 atctctttga ggcggcgcgg cattttgggc gacgaggtgg aggacttcgc cggcctcggg
     5041 cagaaggcgc cggggactgc gctgatgatg gcgctcttca tgctctctct gggcggcctg
     5101 cccggcacgg gcggcttcat cgggaagctg ttcctgttcg gcggcgtcat cgagcgcggg
     5161 agggccgagg ggaagaactg gtactactgg ctcgtcgcgt gggcggccct gaacaccgta
     5221 gtctccttct actactacgt gcgcttcata cgcgcgatgt acataggcga gcgcgcgccc
     5281 gaccggcagc cgctctcgct ctcgcccgcg ctacaggcgg cgctcgtagt ctgcgccgtc
     5341 tgcgtcgtgc tcatcggcct ctacccgcac cccttcataa aggcggccga ggcgctcgtc
     5401 acggcgctcg cgcccggcgg gctcgcgtcc gtccgctgaa gcttctcttt ttggttctaa
     5461 cgggtggttg agcggcgcgc ccgcctgaac tccgcgagcc agagaaggaa gtaggtcaag
     5521 gacgagccgc agatcgcgag cgtcgccccg aggctcaaag ccctcagcgc cgcctccatc
     5581 agcctcaact gaaattccgc ccgtgacacg ccgagattcg acaagtcggg gaattccatc
     5641 tctcgtctcc ggcccggtct ccctttcgca tgaccggttc atgccggaga tacgagccgc
     5701 ccgccgcagg cggattcacg cccctgattc gacctaacgc gagattcttc gcccgattca
     5761 atcacataat gttgctacat atgtaggtag ttccccgtag cgcggggcgg gtgcattatg
     5821 cgtcgcgcgc cggggggacg agcccacccg aggcgcacag ggcggaaacg ttttaatgac
     5881 cggcgcccgg cgaggcgccc gagagaataa aaggagaaga gcatgaacag cacagacacc
     5941 tcacgcaaat caatcatcgc gcgcgcgtcc ctaatgcttc tcgcaatcgt agccttcgcg
     6001 cttctt
//
LOCUS       DASPKR010000493         4035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_849795, whole genome shotgun sequence.
ACCESSION   DASPKR010000493 DASPKR010000000
VERSION     DASPKR010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4035)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4035
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_849795"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..622
                     /locus_tag="VD968_13250"
     CDS             <1..622
                     /locus_tag="VD968_13250"
                     /inference="COORDINATES: protein motif:HMM:NF021505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2231 domain-containing protein"
                     /protein_id="HYE15403.1"
                     /translation="RIGGGERLMERPMERGGTVRDVKEAARLFKMGAPMHPIFVHFTI
                     ALTASSLAFDALGFFTARASLTAAGGWALVGSALMTLMTISTGLTSAARAPLEEGEAR
                     SFLRAHMALGFVFYGLLVAMALWRLSLWQAGAGVSWWYLAALGAVSLVMTVQGYLGGE
                     LVYRYGVEVEQAYRELPEREADSTPPHLAASSTQADSVAAAPKRGD"
     gene            632..1450
                     /locus_tag="VD968_13255"
     CDS             632..1450
                     /locus_tag="VD968_13255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15404.1"
                     /translation="MTGTPFIGLYPFQWIALVTAVLALLLAGEALVGHYRKGFVLRAQ
                     YAPLVSGGVLVVAALVAGIAPGAAWANVALRAAGWLALATGVVGFGSHHYYGIARKPG
                     GYGWFLHHLMYGAPQLAPLAFAHVGLLALVTARGLAGAARFAGVGVRAALLGFVAVAL
                     AGAILQAGILHYRGAFNNPLMYAPLTAPLLAVLASVWTALAPGRAASLALAALLWLTF
                     LIGFAGWGMHLRGMGRQMGGLYVTLFNLLEGPAPFAPALFAGFAAVGLVAVYLL"
     gene            1470..2105
                     /locus_tag="VD968_13260"
     CDS             1470..2105
                     /locus_tag="VD968_13260"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HYE15405.1"
                     /translation="MTGEEEFITRYPGYNVLDRWSSPDWDDQTRAIVRQRLEEVPPVR
                     FFNEHEARTLAAVAERMVPQPERSEGDKVPIVPWIDEKLYEDKRDGYRYEELPPQREA
                     WRLGLAGIDEASRALFDGKRFVELDPLSQDVVLHHVERGNAPGAAWERMPAARFFRSV
                     LSITIVKTYYAHPLAWNEIGYGGPSSPRGHVRKWEGGVDPWEAREEKSSRR"
     gene            2132..>4035
                     /locus_tag="VD968_13265"
     CDS             2132..>4035
                     /locus_tag="VD968_13265"
                     /inference="COORDINATES: protein motif:HMM:NF026092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching N-terminal
                     domain-containing protein"
                     /protein_id="HYE15406.1"
                     /translation="MIVRPQDYLVRLRPRDDTLYVSQSRTVLATDRDGFISGGADHGL
                     LVHQTRLLSRYRYLINGRQWRPVALSNVEQHTWLGYYIALPPGVEEERDPGSGQMEVI
                     SQQTLELRLSRYVGDALHEDVDITNFTQQPVAFTLTLEADADFADVDETKGERVQEGE
                     VAREWRAAGGGRELYFDYKVEHTYSHRGGAGTRHLHRGVAVRVENTTSASTYDDGQIS
                     FTVELEPLGHWHACLDLIPFIDGQWLQPLYGCRSFGGARNEYDRRRKIFLSEATSFTA
                     PQSETLTHVVTGALEQAKRDLAALRLYDLDQGERAWTTAAGLPIFLALFGRDALTTAW
                     QAALLGPDMMNGALPELARWQGKEVNDWRDEQPGKMLHEAHTGPTKMLDISARRRYYG
                     SITTSGFYPVIVSELWHWTGDKELIRPLVEPAMKAIRWLDEYGDLDGDGFYEYRTRSE
                     QGVRHQAWKDSADAIVYEDGSQVEPPIATCEEQGFAYLAKLHMSEVLWWLDEKDAAKR
                     LFREAEELKKHFNEAFWMDTEGFFALGLDARKRQIRSITSNPGHCLATAITDEALVPR
                     TALRFIADDLFSGWGVRTLSSKHPAYNPYSYHRGSVWPVEHGTFAVAFARYGYQRVVE
                     LIAQAQFEAAA"
BASE COUNT          663 a         1284 c         1381 g          707 t
ORIGIN      
        1 gcgaatcggc ggaggcgaac gcctgatgga gcgaccgatg gaacgcggcg gcacggttag
       61 ggacgtgaag gaggcggcgc gcctgttcaa gatgggcgcg ccgatgcacc cgatcttcgt
      121 ccacttcacc atcgcgctga cggcctcctc gctcgccttc gacgcgctcg gcttcttcac
      181 ggcccgcgcg tcgctcacag ccgccggtgg ctgggcgctc gtcggttcgg ccttgatgac
      241 gctcatgacg atctcgacgg ggctgacttc ggccgcgcgt gcgccgttgg aggagggcga
      301 ggcgcgctcg ttcctgcgcg cgcacatggc gctcggcttc gtcttctacg ggctgctcgt
      361 ggcgatggcg ctgtggcggc tgtcgctgtg gcaggcgggc gcgggagtct cttggtggta
      421 tctggcggcg ttgggagcgg tctcactcgt gatgacggtg cagggctatt tgggcggcga
      481 actcgtctac cgctacggcg tcgaggtcga gcaggcgtac cgcgaattgc cggaacgaga
      541 ggccgactcg acaccccctc atttagccgc ctcatcgact caggcagact cagtcgctgc
      601 cgccccgaag cgaggagatt gagggcgcgg cgtgacaggt acaccgttca ttggccttta
      661 cccgttccaa tggatcgcgc tggtcacggc agtgctggcg ctgctactcg ccggcgaggc
      721 gctggtcggg cactaccgca agggcttcgt cttgcgcgca cagtacgcgc ccttggtcag
      781 cggcggagtg ctcgtcgtgg cagcgttggt ggctggcatc gcgccgggcg cggcttgggc
      841 gaacgtggcg ttgcgcgccg caggctggct ggcgctcgcg accggcgtcg tcggcttcgg
      901 ctcccaccat tactacggca tcgcgaggaa gccgggcggt tacgggtggt tcctgcacca
      961 cctgatgtac ggcgcaccac aactcgcgcc gctcgcgttc gcgcacgtgg gcttgctcgc
     1021 actcgtcacg gcgcgggggc tggcgggcgc ggcgcggttc gcgggcgtgg gcgtgcgggc
     1081 cgcgctgctc ggcttcgtgg ccgtcgcgct cgcgggggcg atcctgcagg cgggcatcct
     1141 gcattaccgc ggcgcgttca ataacccttt gatgtacgcg ccgctgactg cgcctctgct
     1201 cgccgtctta gcaagcgtct ggacggccct cgcgccgggc cgcgcggcgt cgctcgcctt
     1261 ggcggccctg ttgtggctga cgttcctcat aggcttcgcc ggatggggga tgcacctgcg
     1321 aggtatgggc cgccagatgg gcgggctcta cgtaacgctc tttaacctgc tcgaagggcc
     1381 ggccccgttt gcgcccgcgc tcttcgcggg tttcgccgcc gtagggctgg tcgctgttta
     1441 tctgctgtag atggaactgg gttgttcgta tgacagggga ggaagagttt atcactcgct
     1501 atccgggcta caacgtacta gacagatggt cgtcgcccga ttgggacgac cagacgcgcg
     1561 cgatcgtgcg gcagcgtctg gaggaagtcc cgcccgtccg cttcttcaac gagcacgagg
     1621 cgcgcacact cgcggcggtc gcggaacgga tggtaccgca gcccgaacgg agcgagggcg
     1681 acaaggttcc aatcgtgccg tggatcgacg agaagctcta cgaggacaag cgcgacggct
     1741 accgctacga agagctgccg ccgcagcgcg aggcgtggcg gctaggactc gcaggcattg
     1801 acgaggcgtc gcgcgcactc ttcgacggca aaaggttcgt cgaactcgac cccctctccc
     1861 aagatgtcgt gctgcaccac gtcgagcgcg gtaacgcccc cggcgcggcg tgggagcgaa
     1921 tgccagcagc gcggttcttc cgcagcgtgc tctcgatcac aatagtcaag acctactacg
     1981 cgcacccgct ggcttggaac gagatcggct acggcggccc ttccagcccg cgcgggcacg
     2041 tacgcaagtg ggaaggcggc gttgaccctt gggaagcgcg ggaggagaag tctagccgtc
     2101 ggtgaatacg ggagggtaac gagagaccgc gatgatcgtc aggccgcaag attatcttgt
     2161 gaggttgcgc ccgcgcgacg acacgctcta tgtcagccag agccgcaccg ttctcgccac
     2221 cgaccgcgac ggcttcatca gcgggggcgc ggatcacggg ctgcttgtgc atcagacgcg
     2281 gctgctctcc cgctacaggt atctgattaa cggaagacag tggcggcccg tagcgctctc
     2341 gaacgtcgag cagcacactt ggctcggcta ctacatcgcc ctaccgccgg gcgtcgagga
     2401 agaacgtgac cccggcagcg gtcagatgga ggtcatctcg cagcagacgc ttgagctgcg
     2461 cctttcgcgc tacgtcggcg acgccctgca cgaagatgtt gacatcacga acttcacgca
     2521 gcagcccgtc gccttcacgc tcacgcttga ggcggacgcg gacttcgccg acgttgacga
     2581 gactaaggga gagagggtgc aggagggcga ggtcgcgcgt gagtggcgcg cggcgggcgg
     2641 cgggcgggaa ctctatttcg attacaaggt cgagcacact tacagccatc gagggggagc
     2701 ggggacgagg cacctccatc gcggcgtggc ggtgcgcgtc gagaacacta cgtccgcgtc
     2761 gacctacgac gacgggcaaa tttccttcac cgttgaactc gaaccgctcg ggcattggca
     2821 cgcttgcctc gacctgatcc ctttcattga cggccaatgg cttcagccgc tctacggctg
     2881 ccgctcgttc ggcggcgcgc gcaacgaata cgaccggcgg agaaaaatct tcttgagcga
     2941 ggcgaccagc ttcaccgcgc cgcagagcga gacgctcacg catgtagtca cgggcgcgct
     3001 ggagcaggcg aagcgtgact tggccgcgct ccgcctctac gacctcgatc aaggcgagcg
     3061 cgcgtggact actgccgcgg ggcttccgat cttcttggcg ctctttgggc gcgacgcgct
     3121 caccaccgct tggcaggccg cgctcctcgg ccccgacatg atgaatggcg cgctccccga
     3181 actcgcgcgt tggcagggga aagaagttaa tgactggcgt gacgagcagc ccggcaagat
     3241 gctccacgag gcgcacacag ggccgacgaa gatgctcgac atcagcgcgc gccgtcgcta
     3301 ttacggctcg atcacgacct ccggcttcta ccccgtaatc gtatcggagc tgtggcactg
     3361 gacgggcgac aaggagttga tacgcccgct cgttgaaccg gcgatgaagg ctatccgttg
     3421 gctcgacgaa tacggcgacc tcgacggcga cggtttctac gagtaccgga ctcgctcgga
     3481 gcagggggtg aggcatcagg cgtggaagga ctcggcggac gctatagttt acgaagacgg
     3541 ctcgcaggtc gagcctccca tcgcgacgtg cgaagagcaa gggtttgctt acctcgcgaa
     3601 gctccacatg tcggaagttc tgtggtggct cgacgagaag gacgcggcga agagactctt
     3661 ccgcgaggcg gaggagttga agaagcattt caacgaagcc ttctggatgg atacggaggg
     3721 cttcttcgcc ttgggcctcg atgcgcggaa gcggcagatc aggtccatca cctcgaaccc
     3781 cggccactgc ctcgccacgg ccatcacgga cgaggcgctc gtgccacgca cggccctgcg
     3841 cttcatcgcc gacgacctat tttccggttg gggcgtgcgc acgctctcct cgaagcaccc
     3901 ggcctacaac ccttacagct accaccgcgg ctccgtctgg ccggtcgagc acgggacgtt
     3961 cgccgtcgcg ttcgcgcgct acggctacca acgcgtcgta gagttgatcg cgcaagcgca
     4021 gttcgaggcc gccgc
//
LOCUS       DASPKR010000494         4770 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_461937, whole genome shotgun sequence.
ACCESSION   DASPKR010000494 DASPKR010000000
VERSION     DASPKR010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4770)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4770
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461937"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..221)
                     /locus_tag="VD968_13270"
     CDS             complement(<1..221)
                     /locus_tag="VD968_13270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE15407.1"
                     /translation="MDASEERDAERARIVIVGGGFGGLFTALGLAGAGQVTLVSNEDH
                     FLHTPLLYEYLSGEVEAWHIAPRYGELLD"
     gene            453..1418
                     /locus_tag="VD968_13275"
     CDS             453..1418
                     /locus_tag="VD968_13275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15408.1"
                     /translation="MRGLAFILRTLLYGWLLALIELIKKILRRCRAGKRRGGESERDR
                     RSSRVPCVPIDEPAFVRPDPLIYAQFYLMKLGLAVTWDNPDIQLRLNGAPVSSSLLKP
                     ATTYEIVARVWNNSFTAPVAAMPVHFSYLDFGAGTVSVPIGSTKIDLGVKGGPDHPAF
                     AAVPWTTPAEPGHYCIQVLLDPPDDINSFNNLGQENTNVGEAHSPAVFTFKLRNDTAR
                     ERRYRFEVDSYHLVPSGPCRERWGEEERRARLQLHARGKHPVPAGWGVSITPDAPVLA
                     PGDEITVTASFEPPNGFAGAQDFNVNALHDDGLAGGVTLTVLAGA"
     gene            1432..2460
                     /locus_tag="VD968_13280"
     CDS             1432..2460
                     /locus_tag="VD968_13280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15409.1"
                     /translation="MNYVQHTICVQPSGYSSMNQYVSATIQAILAGGISAAIAGVSAM
                     PWCALFAIPVTAAVWLIAYCQWWLYGRLVCLGGDHTAVGMLVSVEPPENKSGFDALDT
                     DYSINLLLPPNKPGVNQATAEASSPYGFLIKEQAATKDIGLPFKGEAATDKGTGVKSA
                     ILHCEFEGAGVADTMLGAQIGLGLAVAALIVCLAVPPPWGMIIAGILAFLALLAMLLG
                     LLIGLGDTGSPGDVNPSLGALHTNDASKGGLGADLLVVHGTWIYDSAHEGWNEIHPIK
                     LCERVGTWNGDWPADLDDQIKRWEGVIADAIKPQTIAGQTEPQNHWEVHPGVDGCQPG
                     GGDLPPIH"
     gene            2586..2855
                     /gene="rpsO"
                     /locus_tag="VD968_13285"
     CDS             2586..2855
                     /gene="rpsO"
                     /locus_tag="VD968_13285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HYE15410.1"
                     /translation="MALATEVKERIIGQYATHEGDTGSPQVQVALLTQRINELTEHFK
                     THKKDNHSRRGLLKMVSQRRSLLDYLKRRDIEGYHELIGKLGLRR"
     gene            3230..>4770
                     /locus_tag="VD968_13290"
     CDS             3230..>4770
                     /locus_tag="VD968_13290"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: protein motif:HMM:NF008805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HYE15411.1"
                     /translation="MAAKKFLREKIKVGDRELSVEIGRIAKQANGSCVIRYGDTMLLV
                     AAVSTNSPREGIDFFPLTVEYREHNYAAGRIPGNYFRREGRPNEKEVLTARMIDRPCR
                     PLFVEGYKNETQVIASVISADAENDPDVIAITGASCALYLSDIPFPNPIAGVRVGLID
                     GRYIINPTYDEVRESRLNLIVAGTEEAIIMVEAGAKEVSEEIMVEALMLAHKEINRLC
                     RWQKELYKALEIEKRPFETPQLNEEMTGEIERNYSERLRAALDTATHGKQASYAAVDA
                     LKKEVVESYPEDQPEQRQMAKKVFDHLKEKIFREDILGNRRRPDNRRFSEIRPIDVEV
                     GWLPRVHGSALFTRGETQAIVTATLGTKEDEQFLDDLESGEIKRRFLLHYNFPHFSVG
                     EVGRFGSTSRREIGHGALARRALEPVLPTEEEFPYSLRIVSDITESNGSSSMATVCGG
                     SLALMDAGVPIKSGVAGVAMGLVMEGNRYAILSDIAGAEDHYGDMDFKVAGTRQGITA
                     LQMDI"
BASE COUNT          891 a         1654 c         1505 g          720 t
ORIGIN      
        1 tcgtccagca gttcgccgta gcggggcgcg atgtgccacg cctcgacctc gccgctcagg
       61 tactcgtaga ggagcggcgt gtgcaggaag tgatcctcgt tcgagacgag cgtcacctgt
      121 cccgcgcccg cgaggcccag cgccgtgaag agcccgccga acccgcctcc cacgattact
      181 atgcgcgctc tctccgcgtc gcgctcctcg cttgcgtcca tcaggcgtcg tctcccgtcc
      241 gcgtgttgcc gaaccgcgcg gcatggtagc agagaagccg ccgcgcgcgc acgccgcggc
      301 cgcgaagggc cgcgcgggct gtgcgttatc taacagacaa aatttccggc ccccctctgt
      361 taaggcgcat gtaaatggta tagactgccg gcgcacttcc gaagggcctc gcctcgctca
      421 agctttacac cctcaaacca ccggaggagt ttatgagagg gctcgccttc attctgcgca
      481 ctctcctgta cggctggctg ctcgccttaa tcgagctcat aaagaaaatc ctacgccgct
      541 gccgcgccgg gaagaggcgc gggggcgagt cggagcgcga ccggcgctcc tcgcgcgtcc
      601 catgcgtgcc gatagacgag ccggccttcg tccgccccga cccgctcatc tacgcgcagt
      661 tctacctgat gaagctgggg ctcgccgtaa cttgggacaa ccccgacata caactacgcc
      721 tcaacggcgc gcccgtctcc tcgtcgctcc tcaagcccgc gacgacctac gagatagtgg
      781 cgcgcgtatg gaacaactcc ttcaccgcgc ccgtggcggc gatgcccgtc cacttctcct
      841 acctcgactt cggcgcggga accgtgagcg tccccatcgg ctcgaccaag atagacctcg
      901 gggtgaaggg aggccccgac cacccggcct tcgccgccgt gccgtggact acgccggccg
      961 agccgggcca ctactgcata caggtcttgc tcgacccgcc cgacgacatc aactcgttca
     1021 acaacctcgg gcaggagaac acgaacgtag gcgaggcgca ctcgcccgcc gtcttcacct
     1081 tcaagttgcg caacgacacc gcccgcgagc gccgctaccg cttcgaggtg gactcctacc
     1141 acctcgtccc ctcggggccg tgccgcgagc gctggggcga ggaggagcgt cgagcgcgcc
     1201 tgcaactcca cgcgcgcggc aagcacccag tccccgcggg ctggggcgtc tcaataacgc
     1261 ccgacgcgcc cgtgctcgcg cccggcgacg agataacggt gacggcttcg ttcgagccgc
     1321 ccaacggctt cgccggcgcg caggacttca acgtcaacgc gctacacgac gacggcctcg
     1381 ccggcggcgt aacgctcacc gttctggcgg gcgcttgaga gggaggcagg catgaactac
     1441 gtgcagcaca ccatctgcgt acagccttcg ggctacagct cgatgaacca gtacgtgagc
     1501 gcgaccatac aggccatact cgcgggcggg ataagcgctg ccatagcggg ggtgtccgcc
     1561 atgccttggt gcgccctgtt cgcaatcccc gtcaccgcgg ccgtctggct catagcctac
     1621 tgccagtggt ggctctacgg ccggctcgtc tgcctcggcg gcgaccacac ggcggtagga
     1681 atgctcgtct ccgtcgagcc gcccgagaac aagtccggct tcgacgccct ggacaccgac
     1741 tacagcatca acctcctgct cccgcccaac aagcccggcg tgaatcaggc gacggccgag
     1801 gcgagctccc cttacggctt cctcatcaag gagcaggcgg cgacgaagga catcggcctg
     1861 cccttcaagg gcgaggcggc gaccgacaag gggacgggcg tgaagtcggc catactgcac
     1921 tgcgagttcg agggcgcggg cgtggccgac acgatgctcg gcgcgcagat aggcttgggg
     1981 ctcgcggtcg cggcgctcat cgtctgcttg gccgtcccgc cgccgtgggg catgataatc
     2041 gccggcatac tggccttcct cgcgctgctc gccatgctgc tcggcctgct catcggcctc
     2101 ggcgacacgg gcagccccgg cgacgtgaac ccctcgctcg gcgccctgca caccaacgac
     2161 gcctcgaaag gcggcctcgg cgcagacctc ctcgtcgtcc acggcacatg gatttacgac
     2221 tcggcgcacg agggctggaa cgagattcac cccataaagc tctgcgaacg cgtaggcaca
     2281 tggaacggcg actggcccgc cgacctcgac gaccagataa agcgctggga gggcgtcatc
     2341 gccgacgcca tcaagccgca gacgattgcg gggcagaccg agccccagaa ccactgggag
     2401 gtgcaccccg gcgtggacgg ctgccagccc ggcggcggcg acctgccgcc gattcactaa
     2461 cgggggcgcg ctggacactg cgtcgggagg cgtgttaaat tctcccggtt agtagattaa
     2521 ctctagcggt tgcctgagga tacgtcgggc ctactgcgga tcgtgaggat catctcgaga
     2581 cagtcatggc attagcaacg gaagtgaaag aacgcatcat cggccaatac gcaacgcacg
     2641 agggcgacac cggctcgccg caggtgcaag tcgcgctgct cacacagcgc ataaacgagc
     2701 tgaccgagca cttcaagact cacaagaagg acaaccactc gcgccggggg ctgctcaaga
     2761 tggtctcgca gcgtcgcagc ctgctcgact acctcaagcg tagagacatc gaggggtatc
     2821 acgaactcat cggcaagctc ggcctgcgcc gctagctcgg ccggtgcgcg cttcgcggcg
     2881 cgcgttcgtg tcggttttca gtgcgagagg cgacaatcct ctttaacatc gccccgactc
     2941 cgggaaaaag cctttgggag tggccgaacg tgacggcgcc tgaactccca cgggcggagg
     3001 gcggggagcg gcctgtagca tccagggcaa agggcggcac cgggcttcac ggttggaagc
     3061 gcggtgccgt tttttcgtta agccgaccgg gcagccggcg cgcctcacgt agcgcgcggg
     3121 acgccgcggg cggcgcttga atataatcgc cggccgccgc gcggcggatg agacgccgcg
     3181 ccgaacaggc ccgccgccag ggcgggggcg accgaaggag acgagaaaaa tggcagctaa
     3241 gaaattcctc agggaaaaga taaaggtggg agaccgcgag ctctccgtcg agatcggccg
     3301 cattgccaag caggccaacg gctcgtgcgt catacgctac ggcgacacga tgttgctcgt
     3361 ggccgccgtg agcaccaaca gcccgcgcga gggcattgac ttcttcccgc tcacggtcga
     3421 gtaccgcgag cacaactacg ccgccgggcg catccccggc aactacttcc ggcgcgaggg
     3481 gcgcccgaac gagaaggagg tgctgacggc tcgcatgatt gaccgcccgt gccgcccgct
     3541 cttcgtcgag ggctacaaga acgagacgca ggtcatcgcc tccgtcatct ccgccgacgc
     3601 ggagaacgac ccggacgtaa tcgcaatcac cggcgcctca tgcgcgctct acctctccga
     3661 catccccttc ccgaacccga tcgcgggcgt gagagtcggc ctcatagacg gccgctacat
     3721 catcaacccg acctacgacg aggtgcgcga gtcgcgcctg aacctcatcg tcgccggcac
     3781 cgaggaggcc atcatcatgg tcgaggccgg ggcgaaggag gtctccgagg agataatggt
     3841 cgaggccctg atgctcgcgc acaaggagat aaaccgcctg tgccgctggc agaaggagct
     3901 ctacaaggcg ctggagatcg agaagcgccc gttcgagacg ccccagctca acgaggagat
     3961 gacgggcgag atagagcgca actactcgga gcggctgcgc gcggcgctcg acacggcgac
     4021 gcacggcaag caggcctcat acgccgccgt tgacgcccta aagaaggagg tcgtcgagtc
     4081 ctacccggaa gaccagcccg agcagcgcca gatggcgaag aaggtcttcg accacctcaa
     4141 ggagaagatt ttccgcgagg acatactcgg caaccgccgc cgccccgaca accgccgctt
     4201 ctccgaaatc cgcccgattg atgtcgaggt cggctggctc ccgcgcgtcc acggctcggc
     4261 cctattcacg cgcggcgaga cgcaggcgat tgtcaccgcc acgctcggca ctaaagagga
     4321 cgagcagttc ttagacgacc tcgagtcggg cgagataaag cgccgcttcc tccttcacta
     4381 caacttcccg cacttctcgg tcggcgaggt cggccgcttc ggctccacct cgcgccgcga
     4441 gataggccac ggggcgctcg cgcgccgcgc gctagagccg gtgctgccca cggaggagga
     4501 gttcccctac tcgctgcgca tcgtctcgga catcacggag tcgaacgggt cgtcttcgat
     4561 ggcgaccgtc tgcggcggca gccttgcgct catggacgcg ggcgtcccca tcaagtcggg
     4621 cgtcgcgggc gtcgcaatgg ggctcgtcat ggagggcaac cgctacgcca tcctctccga
     4681 catagccgga gccgaagacc actacggcga catggacttc aaggtcgccg gcacccgcca
     4741 gggcatcacc gccctccaga tggacatcaa
//
LOCUS       DASPKR010000495         2817 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_331434, whole genome shotgun sequence.
ACCESSION   DASPKR010000495 DASPKR010000000
VERSION     DASPKR010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2817)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331434"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1577)
                     /locus_tag="VD968_13295"
     CDS             complement(<1..1577)
                     /locus_tag="VD968_13295"
                     /inference="COORDINATES: protein motif:HMM:NF021387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lactate racemase domain-containing protein"
                     /protein_id="HYE15412.1"
                     /translation="MALQLRRKVHESVIYIDNDSAPRIVASGLDFILEDLPVGTRVIY
                     PNAPLRGLPNREAAIRYALNHPQGCDPLYAQLEPGMKVTVAIDDISMPLPPMKTPDIR
                     QTALEIILDLLHANGVDDVHLIIAISLHRRMTEAEIKRMVGPRVFSEFWPDRLYNHDA
                     EDPDGMVLIGETRHKEPLRLNRRAAESDLLIYLNYNFVPMNGGHKSVAVGLCDYESLR
                     PHHEPQTIRDSDSYMDPANSELARKIGRMGKLVNEHLNVFHVETTINNRIFSGETEFL
                     AKNEDNFSAFDRMKYEAMRFTMSKLPRPAKRKLYNSLTSDYQMIACEAGRTDPVHERI
                     LEKSYQQYLIPIEGQADILICPVPDMSPYSVNSTLNPLLVQVMALGYHFNMYRGKPLL
                     KKGGVMILHHPCYDDFDHEFHPSYIEFFNRLLPETRDAFVLRDKYEREFATNPSYIEM
                     YRRGNAYHGAHPFYMWYWGENGRQHVGRVIAAGAENAHVPAIMGWERADNLTEAIAMA
                     RSYVGRSAQITMLHQPC"
     gene            complement(1695..2357)
                     /locus_tag="VD968_13300"
     CDS             complement(1695..2357)
                     /locus_tag="VD968_13300"
                     /inference="COORDINATES: protein motif:HMM:TIGR01490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HYE15413.1"
                     /translation="MAAAAFYDLEGTLVSTNLVHTLGFYARNQQGLLKSLRKSASTLV
                     SIPLFAAADVYSRMVFNDLFFKRYKGETEDRLRFFSRELYENVLKPAVFPGARSLIAK
                     SKSLGLRQVVVTGALDFSVAPLMEHLGVDDYVANRLEFVNGVATGRLLPPVLASATKA
                     SWIRNYAEREGLNLNDSYAYSDSMSDLPMLSIVGHPAAVNPDMRLRQTALHHDWPILN
                     LK"
     gene            2541..>2817
                     /locus_tag="VD968_13305"
     CDS             2541..>2817
                     /locus_tag="VD968_13305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15414.1"
                     /translation="MLRQRSKWLLLPAVSLVLVAQGCSGGRRDEPAEAAGRPETSELV
                     AEADRLYERRESPERAREALALLRRALAADYKSYEAAWKLARAGFYVG"
BASE COUNT          460 a          787 c         1004 g          566 t
ORIGIN      
        1 atgcagggct ggtggagcat ggttatctgg gcggagcggc ccacgtagct gcgggccatc
       61 gctatcgcct cggtcaaatt gtcggcgcgc tcccatccca ttatggcggg gacgtgcgcg
      121 ttctcggcgc cggcggctat gacgcggccg acatgctggc ggccgttctc gccccagtac
      181 cacatgtaga aggggtgcgc gccgtggtag gcattgccgc ggcggtacat ctctatgtag
      241 ctggggttag tggcgaactc gcgctcgtat ttgtcgcgca gcacgaaggc gtcgcgcgtc
      301 tcgggcagca ggcggttgaa gaactctatg tagctcgggt ggaactcgtg gtcgaagtcg
      361 tcgtagcacg ggtggtgaag gatcatcacg ccgcccttct taagcaaggg cttcccgcgg
      421 tacatgttga agtggtagcc aagggccatc acctgcacga gcagggggtt tagcgtcgag
      481 ttgacgctgt agggcgacat gtctgggacg gggcagatga gtatgtcggc ctgcccctcg
      541 atggggatga gatactgctg gtagctcttc tcaagaatgc gctcgtggac ggggtctgtg
      601 cggccggcct cgcaggcgat catctggtag tcggaggtca gggagttgta gagctttcgc
      661 ttggcgggcc gcggcagctt cgacatggtg aagcgcatcg cctcgtactt catgcggtcg
      721 aaggccgaga agttgtcctc gttcttggcc aggaactcgg tctcgcccga gaagattcgg
      781 ttgttgatgg tcgtctcgac gtggaagacg tttaggtgct cgttgacgag cttgcccatg
      841 cggccgatct tgcgcgcgag ctcggagttc gcagggtcca tgtagctgtc ggagtccctt
      901 atcgtctgcg gctcgtggtg cgggcgcagg gattcgtagt cgcataggcc gacggcgacc
      961 gacttgtggc cgccgttcat ggggacgaag ttgtagttga ggtagatgag gaggtcgctc
     1021 tcggcggcgc ggcggttgag ccgcagaggc tccttgtggc gcgtctcgcc tatcaagacc
     1081 atgccgtccg ggtcttcggc gtcgtggttg tagaggcggt cgggccagaa ctcggagaag
     1141 actcgggggc cgaccatgcg ctttatctcg gcctcggtca tgcgccggtg gagcgagatg
     1201 gcgatgatta ggtgaacgtc gtcaacgccg ttggcgtgca gcaggtcgag tatgatctcg
     1261 agcgccgtct gccggatgtc gggcgtcttc atgggcggga gcggcatgct tatgtcgtca
     1321 atggcgaccg tgaccttcat gccgggctcg agctgcgcgt agagcgggtc gcacccctgc
     1381 gggtggttca gggcgtagcg aatcgccgcc tcgcggttcg gcagccccct gagcggcgcg
     1441 ttcgggtaga tgacgcgagt gccaacgggc aggtcttcta ggatgaagtc gagccccgag
     1501 gcgacgatgc gcggcgcgct gtcgttgtct atgtagatga cggattcgtg aactttgcgt
     1561 ctgagttgga gagccatttg ttcaagtagc cagcagccgg tagttagtat ccggtagaaa
     1621 acctctcaaa acatttcgtt cggtagtcag cgccacggtc ggccccgccg ggccggccgt
     1681 ctactgacta ccggctactt caagttcagt atcggccagt cgtggtgcag cgccgtctgg
     1741 cgaagccgca tgtcggggtt gacggccgcg gggtggccga cgatggagag catgggcagg
     1801 tcgctcatgc tgtcgctgta ggcgtaggag tcgttcaggt tcagcccctc acgctcggcg
     1861 taattgcgta tccacgacgc cttcgtggcg gaggcgagca ccggcggcag gagcctgccg
     1921 gtggcgacgc cgttgacgaa ctcgaggcgg tttgcgacgt agtcgtccac gccgaggtgc
     1981 tccattaaag gcgcgacgga gaagtcgagc gcgccggtga cgactacctg acgcaggccc
     2041 aggctctttg acttcgcgat gagcgagcgg gcgccgggga agacggcggg cttcaatacg
     2101 ttctcgtaaa gctcccgcga gaagaagcgg aggcggtctt ccgtctcgcc cttgtagcgc
     2161 ttgaagaaga ggtcgttaaa gaccatgcgg ctgtaaacgt ccgctgcggc gaacaggggg
     2221 atgctgacga gcgtggaggc gctcttgcgc aggctcttca ggagcccctg ctggttgcgc
     2281 gcgtagaagc cgagcgtgtg cacgaggttc gtgctgacca gtgtgccttc gaggtcgtag
     2341 aatgcggcgg ccgccaaaac tcctcctcca agctatacgt ccggcgcgaa aaacttaagg
     2401 ctggcgctct agtctatatg aattcttgcg ttgggtgaaa atattaaccc aaacggcgcc
     2461 cgatttgtaa acggccgggg ctctcaggcc gtccgcccgt gcgccgcctc gcccgctgcg
     2521 cggtgctata ctggccgccc atgttacgcc agagaagtaa gtggctgctt ctcccggccg
     2581 tttcgctggt gctcgtcgcg cagggctgct cgggcgggcg cagggatgag ccggcagagg
     2641 ccgccggccg tcccgagacg tcagagcttg tggcggaggc agaccgtctc tacgagcggc
     2701 gcgagtcgcc ggagcgcgcg cgcgaagccc tcgcgttgct caggcgcgcg ctcgcggccg
     2761 actacaagag ctacgaggcc gcgtggaaac tggcgcgcgc cggcttctac gttggca
//
LOCUS       DASPKR010000496         7444 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1753041, whole genome shotgun sequence.
ACCESSION   DASPKR010000496 DASPKR010000000
VERSION     DASPKR010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7444)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7444)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7444
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1753041"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1108)
                     /locus_tag="VD968_13310"
     CDS             complement(<1..1108)
                     /locus_tag="VD968_13310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15415.1"
                     /translation="MHLTVRPVVRSLSLFSFAFLLCLAFSSESVARAATINVAAGQTA
                     VAADGQCSLREAIINANNDAQTHADCPSGSGADTITLPAGTYTTDQGFSDEDFSAEGD
                     LDIRSNITINGAGAGTTIIEAASTPGAASDRVLHVVSGTVVLNDLTVRNGKAPDGADA
                     QSDCTDSGCHDSNGAPGGSGGGILNAGTLTLNRVTMTANRAGKGGKAGDVSCVGSEEE
                     LHSTNCSTSGGKGGGGGAVYSSGALTVNSGTFTNNHSGEGGAAGLTSCSGGASCSSRL
                     GNKGDGGALFGGTLNVTESTFSGNAAYDGGAIQQNDAPVNISNSSFAGNTAEWTGGAM
                     NCNSGAITCDISGSTFSGNNATGGYGGALAFFNGG"
     gene            1523..2851
                     /locus_tag="VD968_13315"
     CDS             1523..2851
                     /locus_tag="VD968_13315"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HYE15416.1"
                     /translation="MPLFAPRGRKFLLALLFALAAATPVLAQQTLKLTKIEFKGLERI
                     TEAQALEKAGLQPGQSAVVDDVEAAANRLVESGLFKNLSYQIKGTTDAAVVTFTVIEN
                     KPTVPVVFDNFVWFTDEELNKAVRARVPNFDGTAPETGGATEQIAKALQDLLRERKIQ
                     GTVEYTSSATESGANPEFIYTVKGAGLRVCRLTFPGARALTEEQLVGKSGQLFSEDYS
                     RVFTKGFADNTLLPLYHERGYLRASFAPPSVKPDPSSDCEGGLAVTLSVDEGSVYVWD
                     RAEWSGNEALTAEELNAALGMRPKEVANGLKIENAFKAVRKAYGRKGYLTAGVKAAPE
                     FDDANRRVAYRVQVKEGPQYRMGDLTIAGLPESDINNLRGRWRLLHSEVYDEGYLAEF
                     LKKGMGEFFRDAVREGRKFPPLKPVVNTRADREKLLVHVSIEFKPDDGKK"
     gene            complement(2976..3989)
                     /gene="ruvB"
                     /locus_tag="VD968_13320"
     CDS             complement(2976..3989)
                     /gene="ruvB"
                     /locus_tag="VD968_13320"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF000868.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HYE15417.1"
                     /translation="MEPVSVRERGAMEDEKQFDASLRPSRLADYIGQKKATENLGVFM
                     RAARQRNEALDHVLLTGPPGLGKTTLSVIIANEMGAELRSTAGPVIEKPGDLAAILTN
                     LQEGDVLFIDEIHRLNPAIEEVLYPAMEDYQLDIMIGQGTAARSIKLDLPKFTLVGAT
                     TRAGLITAPLRGRFGIVFHLDFYSQKDLEIIVHRSAEILGVEMEASGASEIARRARGT
                     PRIANRLLRRVRDYAEVEYDGRVTREVARRALDEMEVDKFGLDEIDRKVLATIIEKFD
                     GGPVGVGTISASISEERESIEEIIEPYLIQIGFLNRTPRGRVCTPAAYKHMGFTPPKR
                     QAA"
     gene            complement(4012..4635)
                     /gene="ruvA"
                     /locus_tag="VD968_13325"
     CDS             complement(4012..4635)
                     /gene="ruvA"
                     /locus_tag="VD968_13325"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HYE15418.1"
                     /translation="MIAHLSGTLLAKHATSVIVDVGGVGYEVTIPVTTFYDLEEPNSP
                     VRLRIYTHVREDTLQLFGFRTERERQLFTLLISVSGIGPKSAIAMLSGMSADEIVTAI
                     RTNNLARLTSIPGVGKKTAERLVIELRDKMAALSSPALEEEIASGAAAGAQQSEDALR
                     EDTLAALLTLGFQRAAAEKAVNQAIQEGGQLSVETLLRRTLQQLSKG"
     gene            complement(4736..5446)
                     /locus_tag="VD968_13330"
     CDS             complement(4736..5446)
                     /locus_tag="VD968_13330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15419.1"
                     /translation="MPDKTRGFKPRLLVFLLLLFVPSAAARAQGEGNPANWCRNGAFT
                     DSSAGFRLARVTGAKNERAYFYSDEEGCPSMSERCRKKAYVIPGDELIAAHSFGDWAC
                     LWYQPAKGAETVGWMPEHRLSFSEPDKSPPAARWLGDWEFYKNSLEVRRGSRAGGLSV
                     KGTAIWLGLNDNVHTGVLDSQVKPEGNVIRIDDGICQARLTLVGAYLVVDDNNDCGGA
                     NVTFDGVYRRKAAPRARR"
     gene            complement(5446..5613)
                     /locus_tag="VD968_13335"
     CDS             complement(5446..5613)
                     /locus_tag="VD968_13335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15420.1"
                     /translation="MSARAPEFKAYPAGPACCITVITGERAGEVGVHFYDFRGGRFIH
                     PRTALTEGPVN"
     gene            5707..6495
                     /locus_tag="VD968_13340"
     CDS             5707..6495
                     /locus_tag="VD968_13340"
                     /inference="COORDINATES: protein motif:HMM:NF003992.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HYE15421.1"
                     /translation="MLSFTRRPRTRYTCGALSRKEGTAMKSEKISELTTSRLSVYLRC
                     LNLLAAAGIKTISSQALADQFNMNSAQIRKDLAYFGEFGTRGVGYSVDELRRHLTQIL
                     GLDRAHRVGIVGAGNLGTALANYNGFRESNFEVVALFDNDREKVGRKVGRTGVPVHDV
                     RKLARVVRERDIDVAVIAVPARVAQRVLNQVMSAGIKAVLNFAPVRLHARLGVKVKTV
                     DLTISLESLSYFLARPQITCVTNPRSLLPYEEIAQREEQELQQG"
     gene            6511..7035
                     /locus_tag="VD968_13345"
     CDS             6511..7035
                     /locus_tag="VD968_13345"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HYE15422.1"
                     /translation="MLTTFVLTRALPFALTFLIGSAVAGFLKLFDWRSASHTSGSAAV
                     FTARGDGSGCDYRRKRRLTLAGESKPLVITHKPSAVYTREARRAGHSGTVRLNVKFGP
                     DGKVMTVEPLREQPYGLTISAVKAAFDIEFTPAVEGGKPVPATRVIEYDFPSEQTVDE
                     GSGVVDYTAPSPRR"
     gene            7048..>7444
                     /locus_tag="VD968_13350"
     CDS             7048..>7444
                     /locus_tag="VD968_13350"
                     /inference="COORDINATES: protein motif:HMM:NF012804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HYE15423.1"
                     /translation="MDEQTARREIVRVGKLMYERSYVVSSDGNLSVRLDDGRVIATPT
                     QTNKGRMTEDGLAVTDLEGKALNDRRASSELAMHLLIYREREDVRAVCHAHPPHGSAF
                     AVAGLAIDQPILSEVILTLGCVPLAEYGTP"
BASE COUNT         1251 a         2485 c         2404 g         1304 t
ORIGIN      
        1 cgccgccgtt gaagaacgcc agcgcgccgc cgtagcctcc ggtcgcattg ttgccgctga
       61 aggtgctgcc ggagatgtcg caggtgatgg cgccgctgtt gcagttcatc gcgccgcctg
      121 tccactcggc tgtgttgccg gcgaaactgc tgttgctgat gttgaccggg gcgtcattct
      181 gctgaatcgc cccgccgtcg taagccgcgt tgccgctgaa agttgattcg gtgacgttga
      241 gcgtcccgcc gaacagcgct ccgccgtcgc ctttattccc cagccttgaa ctgcaagagg
      301 cgccgcccga gcaactcgtc aagcccgccg cgccgccctc gcccgaatgg ttgttggtga
      361 aagtgccgga gttgacggtc agcgccccgc tgctgtaaac ggcgccgccc ccgccgcctt
      421 tgccgccgga ggtgctgcag ttcgtagaat ggagctcctc ctcagacccc acacagctaa
      481 catctcccgc tttgccgccc ttgcccgctc ggttagcggt catcgtcacg cggttcagcg
      541 tgagcgtgcc ggcgttgagt atgccgccgc cactcccgcc gggagcgccg tttgaatcgt
      601 ggcaaccaga atcagtgcaa tcactctggg cgtccgcgcc gtcgggcgcc ttcccgtttc
      661 ggacggtcag gtcgttcagg acgaccgtgc cgctgacgac gtgcagcacg cggtcggagg
      721 ccgcgcccgg ggtggaagcc gcttcgatta tagtcgtgcc ggcccccgcg ccgttgatgg
      781 tgatgttcga gcgtatgtcg aggtcgccct cggcgctgaa gtcctcgtca ctgaaacctt
      841 ggtcggtcgt gtaagtcccg gccgggagcg tgatggtgtc ggcgccgctc cccgaggggc
      901 agtcggcgtg cgtctgcgcg tcgttgtttg cgttgattat cgcctcgcgc agagagcact
      961 gtccgtcggc ggcgacggca gtctgccccg ccgcgacgtt aatcgttgcc gcccgcgcca
     1021 cgctctcgga agagaaagcg aggcagagca ggaacgcgaa agagaagagt gacagagagc
     1081 gaacgaccgg gcgaactgtg agatgcatgg gcttgttcct taaacgttgc tggggcttgg
     1141 gccggggcat gttcgccgcc ctcgcgcgat gcctcttttc gaagaggcta ctcgcgcgcc
     1201 gggcggcacg ttatctcagc ctgccgggag acaggttccg gttaaggcgg cagggcgcct
     1261 taatcaaaaa gcatagttgt cagggattat cgaagcggcc gttagcttga gaggctgtcc
     1321 gcgttaaggc tcggcggtcg tcctagctaa gggttgaggc cacccctccg cgcaattcag
     1381 gcggcgcaat atagcaccaa agtcgcagcg cgttcaaggg tctatgcccg gcgctttcgg
     1441 ccgcgggcgc tgagttggta agatgtctct tcgcgctccc cgccaaaacg agtcaacgaa
     1501 gaagtagtaa ggagaaaacc tcgtgccctt gtttgccccc cgcggcagaa agtttctgct
     1561 cgccctcctc ttcgcgctgg cagcggcgac gccggtgctc gcgcagcaga ccctgaagct
     1621 caccaaaatc gagttcaagg gccttgagcg catcaccgaa gcgcaggcgc tcgaaaaggc
     1681 gggcctgcaa ccggggcaga gcgccgtcgt ggacgacgtt gaggccgccg caaaccgcct
     1741 cgtcgagtcc ggcctcttta agaacctcag ctaccagata aaggggacga ccgacgcggc
     1801 cgtagtcacc ttcaccgtca tcgagaacaa gccgaccgtc cccgtcgtct tcgacaactt
     1861 cgtctggttc accgacgagg agcttaacaa ggccgtgcgc gccagagtcc ccaacttcga
     1921 cggcaccgcg cccgagacgg gcggggccac cgagcagata gcgaaggcgc tccaagacct
     1981 cctgcgcgag cgcaagattc aggggacggt cgagtacacc tcctcggcaa cggagtcggg
     2041 cgcgaacccc gagttcatat acaccgtgaa gggggctggc ctgcgcgtct gccgcctgac
     2101 gttccccggc gcgcgcgccc tcacggaaga acagctcgtc ggcaagtcgg gccagctctt
     2161 ctcggaagac tattcgcgcg tcttcacgaa gggcttcgcc gacaacacgc tgctgccgct
     2221 ctaccacgag cgcggctacc tgcgcgcctc gttcgcgccc ccctcggtca agcccgaccc
     2281 ttcgtctgac tgcgaggggg gcctcgccgt cacgctctcc gttgacgagg gctcggtcta
     2341 tgtctgggac agggcggagt ggtcgggcaa cgaggctctg acggccgagg agctgaacgc
     2401 cgcgctcggc atgcgcccga aagaggtcgc gaacggctta aagattgaga acgccttcaa
     2461 ggccgtgcgg aaggcttacg ggcggaaagg ttacctgacc gcgggcgtca aggccgcgcc
     2521 cgagttcgac gacgcgaacc gccgcgtcgc ctaccgcgtg caggtaaagg aagggccgca
     2581 gtaccgcatg ggcgacctca caatcgcggg cctccccgaa agcgacataa acaacctgcg
     2641 cgggcgctgg cgcctgctcc acagcgaggt ctatgacgag ggctacctgg cggagtttct
     2701 gaagaagggg atgggcgagt tcttccgcga cgccgtgcgg gaggggcgca agttcccgcc
     2761 gctcaagccc gtcgtcaaca cgagggccga ccgcgaaaag ctactcgtcc acgtcagcat
     2821 agagttcaag cccgacgacg ggaagaagta gaaaaacgcc ctaccccgga cacaccgagg
     2881 cgggcgacgc aacgacggct cccgatccgc ccttgcgcgc ccgcccggcg ctttccggcc
     2941 ccgcgaggcc gaaactcgat ttgtagccct ctgtcttaag ccgcctgccg cttcgggggc
     3001 gtgaacccca tgtgcttgta ggcggccggc gtgcagaccc gcccgcgcgg cgtgcggttg
     3061 aggaagccta tctgaatcag gtagggctcg attatctcct ctatactctc gcgctcctcg
     3121 ctgatcgagg ccgagatggt gccgacgccg acggggccgc cgtcgaactt ctcgatgatg
     3181 gtggccaaga ccttccggtc aatctcgtcg aggccgaact tgtcaacctc catctcgtcg
     3241 agcgcgcgcc gcgccacctc gcgcgtgacg cgcccgtcgt actcgacctc ggcgtagtcg
     3301 cgcacgcggc ggagcaggcg gttcgcgatt ctcggcgtgc cgcgagcgcg gcgcgctatc
     3361 tccgacgcgc ccgaagcctc catctccacg cccagaatct cggccgagcg gtggacgatg
     3421 atttcgaggt ctttctgcga gtagaagtcg aggtggaaga ctatgccgaa gcggccgcgc
     3481 aggggggccg ttatcagccc ggcgcgcgtc gtcgccccga ccagcgtgaa cttcgggagg
     3541 tctaacttga tagaccttgc ggccgtcccc tgcccgatca ttatgtcgag ctggtagtcc
     3601 tccatcgcag ggtagagcac ctcctcgatg gcggggttaa ggcggtgaat ctcatctatg
     3661 aagagaacat cgccctcctg caagtttgtg aggatggcgg cgagatcgcc gggtttctcg
     3721 atgacgggcc ccgcggtcga gcgaagctcg gcacccatct cgttggcgat gatgacggag
     3781 agcgtcgtct tgcccaggcc cggcggcccc gtgagcagga cgtggtcgag cgcctcgttg
     3841 cgctggcgcg ccgcgcgcat gaagacgccg aggttctccg tggccttctt ctgcccgatg
     3901 tagtcggcga gccgcgaggg gcgcaggcta gcgtcgaact gcttctcgtc ctccatcgcg
     3961 ccccgctccc ttacgctcac aggttccata aaacttcaga cggccgtccc gtcatccttt
     4021 cgagagctgc tggagagtgc ggcgcagcag ggtctcgacc gagagctggc cgccctcctg
     4081 tatcgcctgg ttgacggcct tctcggcggc cgcgcgctgg aagccgagcg ttagcagcgc
     4141 cgcgagcgtg tcctcgcgca gcgcgtcctc ggactgctgc gcgcccgcgg ccgcgcccga
     4201 cgctatctcc tcttcgagcg cgggcgatga gagcgccgcc atcttgtcgc gcagctctat
     4261 gacgagccgc tcggccgtct tcttgccgac gcccgggatc gaggtcagcc gcgcgaggtt
     4321 gttcgtgcgg atcgccgtca ctatctcgtc ggcgctcatc cccgagagca tcgctatcgc
     4381 agacttcggg ccgatgccgc tcacggatat caggagcgtg aacagctggc gctcgcgctc
     4441 agtcctgaag ccgaagagct gtagcgtgtc ctctcggacg tgcgtgtaga tgcggagccg
     4501 gacgggcgag ttcggctcct cgaggtcgta gaaggtcgtg acggggatgg tgacttcgta
     4561 gccgacgccg cccacgtcaa ctatcacact ggtcgcgtgc ttagccagaa gggttcctga
     4621 gaggtgcgca atcatcttta ctgaaaaacc gtgcgacgag ggaagggatt tcgggagcgc
     4681 ctccgcgttt cgaacggatt attgcacgta ccgcgccgcg agcggtagcg gcccgtcagc
     4741 gccgggctcg cggcgcagcc ttcctccgat agacgccgtc gaaggtgacg ttggcgccgc
     4801 cgcaatcgtt gttgtcgtca acgaccaggt acgcgccgac gagcgtgagc cgggcctggc
     4861 agatgccgtc gtcaatccgt atgacgttgc cttctggctt cacctgcgaa tccagcacgc
     4921 ccgtgtggac gttgtcgttc aggccaagcc agatcgcagt ccccttgacg gagagccccc
     4981 cggcgcggct gcctcgccgt acctccagac tgtttttgta gaattcccaa tcgccgagcc
     5041 agcgcgccgc gggcgggctc ttgtccggct ccgagaagct caggcggtgc tcgggcatcc
     5101 agcccacggt ctccgcgccc ttcgccggct gataccacaa gcaggcccag tcgccgaagc
     5161 tgtgcgcggc aatgagctcg tcgccgggga ttacgtaagc cttcttcctg caccgttcgc
     5221 tcatcgaggg gcagccctct tcgtcgctgt aaaagtatgc gcgctcgttc ttcgcgcccg
     5281 tgacccgcgc caggcggaag cccgcgctcg aatcggtgaa cgcgccgttc cggcaccagt
     5341 tcgcggggtt gccttcgccc tgcgcgcgcg ccgccgcgga aggcacgaag agcaggagca
     5401 ggaacacgag cagccgcggc ttgaagcctc tcgtcttatc gggcatcagt ttacgggccc
     5461 ctccgtcagg gcggttcgcg ggtgtatgaa gcggccgccc ctgaagtcgt agaagtggac
     5521 gcccacctcg cccgcgcgct cgcccgtgat tacagtgatg cagcacgcag gcccggccgg
     5581 gtaggcttta aactccggcg cccgcgccga catggacgag cgccgcggcc gccgtgatta
     5641 ttctcaaaag cttcttcttc actctcccca aggcggcggg attatacttc aggggccgcc
     5701 cgcccgctgt tatcttttac gcggcggccc cgcacgcgct atacttgcgg cgcgctctcc
     5761 cgaaaagaag gtaccgcgat gaaatcggag aagatttcgg agctgacgac gagccgactg
     5821 agcgtctatc tgcgctgcct gaaccttctg gccgccgcgg gcatcaagac catctcctcg
     5881 caggcgctcg ccgaccagtt caacatgaac tcggcgcaga tacgtaaaga cctcgcttac
     5941 ttcggggagt tcggcacgcg cggcgtgggc tactccgtgg acgagctgcg acggcacctt
     6001 actcagatac tcgggctcga ccgcgcgcac cgcgtaggca tcgtcggcgc gggcaacctc
     6061 ggcaccgcgc tcgcgaacta caacggcttc cgcgagtcga acttcgaggt cgtcgccctc
     6121 ttcgacaacg accgcgagaa ggtgggccgc aaggtcggcc gcaccggcgt ccccgtccac
     6181 gacgttcgca agctcgcgcg agtcgtgcgc gaacgcgaca tagacgttgc cgtcatagcc
     6241 gtccccgcgc gcgtcgcgca gcgagtgctc aaccaggtga tgagcgcggg gataaaggcc
     6301 gtcttgaact tcgcgcccgt gcggctgcac gcgcgactgg gcgtgaaggt gaagacggtt
     6361 gacttgacga tctcgctgga atcgctatcg tactttctgg cccgcccgca gataacctgc
     6421 gtgacgaacc cgcgcagcct cctcccctac gaggagatag cgcagcgcga ggagcaagag
     6481 ttgcagcaag gctgacaagg agttccgggt atgttgacga ccttcgtgct gacgagagca
     6541 ctgccgttcg ctctgacttt tctcatcggc tcggccgtgg ccggcttctt gaaactcttc
     6601 gattggcgct ccgcgagcca cacgtcgggc tcggccgcgg tgtttacggc gcgcggggat
     6661 ggctccggct gcgactaccg tcgcaagcgc cggctgacgc tcgcgggcga gtcgaagccg
     6721 ctcgtcatca cgcacaagcc gagcgccgtc tatacgcgcg aggcccggcg cgccggccac
     6781 tcggggacgg tgcggcttaa cgtcaagttc ggccccgacg gcaaagtcat gaccgtcgag
     6841 ccgttgcgcg agcagcccta cggcctgacc atctcggccg tgaaggccgc cttcgacata
     6901 gagttcacgc ctgccgtgga ggggggcaag cctgttcccg cgacgcgcgt catcgagtac
     6961 gacttcccga gcgagcagac ggttgacgag ggctccggcg tggtggatta caccgcgccg
     7021 tcgccccgac gttagttccc aattttgatg gacgagcaga cagcccggcg cgagatagtc
     7081 cgcgtcggca agttgatgta cgagcgctcc tacgtcgtct cctctgacgg caacctgagc
     7141 gtccgcctcg acgacggacg cgtcatcgcc acgcccacgc agaccaacaa ggggcggatg
     7201 accgaggacg gactcgccgt cacggacctc gaaggcaagg cgctcaacga ccgccgcgcg
     7261 tcgtcggaac tggcgatgca cctgctcatc taccgcgagc gcgaggacgt gcgggcggtc
     7321 tgccacgcgc acccgccgca cggctcggcc ttcgccgtcg ccgggctcgc catcgaccag
     7381 ccgatcctgt cggaagtaat cctgaccctg ggctgcgtcc cgctcgccga gtacggcacg
     7441 ccct
//
LOCUS       DASPKR010000497         2340 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_204021, whole genome shotgun sequence.
ACCESSION   DASPKR010000497 DASPKR010000000
VERSION     DASPKR010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204021"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..896)
                     /locus_tag="VD968_13355"
     CDS             complement(<1..896)
                     /locus_tag="VD968_13355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15424.1"
                     /translation="MPEYLAPGVYVEEVSFRAKSIEGVSTTTTGFIGPTRYGPVDMEP
                     DVITSLGEFERVYGDNQKLTYGSGAQDDNFMWHAARAFFQEGGRRLYVSRVFRPRAGS
                     DGFARATLPTSGPAGAGLSVRARFPGAAGSMRVRFTLRLGQNVLGGEAGRDAQGNIDP
                     NNMRAKAAGLSNGDVVWVSNLPSPPGSPPSSERGDYYVASPVFDETRKEWTWRFTATA
                     TSPAIPTTAGGIPGTLNLADLAPNSDPRLSDKIRVVTLTITATMPDGTTQVWDNLPLD
                     PKHETAGSPDSPFSRFAENPGSL"
     gene            complement(906..1874)
                     /locus_tag="VD968_13360"
     CDS             complement(906..1874)
                     /locus_tag="VD968_13360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15425.1"
                     /translation="MIEAFRLTERLSFVAPLGVRFWDTVSGEIVSGGLSVTAYPAHGA
                     GRPTRAVANRSGTFVLHHAYGLGDIERGAGDEEFWQSPPPRAPFVVEVADYEGRFLPF
                     TLDADLPVRGLMRWQHPPGRERLAPETAVPLYASPTRPVPQALAVLRTELGDTSTNGP
                     AAWAVLEAKMNGRLLGRSVADAQGRVALLFAYPEPLDFTSGGGGPSSPLSPPGAFATG
                     PPFLQQEWRVRLDAFYTPAAVSSPPSAISPPGAAARRAPDLYDILAQQPVPLWDGPAR
                     AQQLTEVRLRYGRELVVRPAGAASSPPTAPTPLPELFISTAGLTPS"
     gene            complement(1871..>2340)
                     /locus_tag="VD968_13365"
     CDS             complement(1871..>2340)
                     /locus_tag="VD968_13365"
                     /inference="COORDINATES: protein motif:HMM:NF025431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4255 domain-containing protein"
                     /protein_id="HYE15426.1"
                     /translation="PEGISLFLYRVAVRTGRRNLPPTVRPDGTRSRPPLPLDLFYLLT
                     AWAQTAEMQQRLLGWTLRELENLPSLPSGLLNHYGPESDAFRPGESVELIFDALSVQD
                     MNNLWEGFRVNKANQQLSVGYIARMLLIESDVEISEHEPVQTRVFDYGKELPR"
BASE COUNT          350 a          760 c          877 g          353 t
ORIGIN      
        1 agcgagccgg ggttctcggc gaagcgtgag aagggcgagt cgggcgagcc ggccgtctcg
       61 tgcttcgggt cgagcggcag gttgtcccag acctgcgtcg tcccgtcggg catcgtcgcc
      121 gttatcgtca gcgtcacgac ccgaatcttg tcggagaggc gcgggtctga gttcggcgcg
      181 aggtctgcga ggttgagcgt gccggggatg ccgccggcgg tcgtgggaat ggcgggcgag
      241 gtggcagtcg ccgtgaagcg ccacgtccac tccttgcgcg tctcgtcgaa gacgggggag
      301 gcaacgtaat agtcgccgcg ctcggagctg ggcgggctgc ccggcgggct cggcaggttg
      361 ctgacccaaa ccacgtcgcc gttcgagagg cccgcggcct tcgcccgcat gttattcggg
      421 tctatgttgc cctgcgcgtc gcggcctgcc tcgccgccga gcacgttctg ccctagccgc
      481 agcgtgaagc gcactctcat gctgccggcc gctccgggga agcgcgcccg aacgctcagc
      541 cccgcgccgg ccggccccga ggtgggcagc gtggcgcgcg cgaagccgtc gctgccggcg
      601 cgcgggcgga agacgcgtga gacgtagagg cggcgcccgc cctcctggaa gaaggcgcgc
      661 gcggcgtgcc acatgaagtt gtcatcctgc gcgccgctgc cgtaggtgag cttctggttg
      721 tctccataga cgcgctcgaa ctcgccgagg ctcgttatca cgtccggctc catatcaacg
      781 gggccgtagc gcgtcgggcc gatgaaaccc gtcgtggtcg tgcttacgcc ctcgatggac
      841 ttggcgcgaa acgagacctc ttcgacgtaa actcctggcg caagatattc gggcatggcc
      901 tctccttatg acggcgttag tcccgccgtg gaaataaaca gttcgggtag cggtgtcggc
      961 gcggtcggcg ggctcgaagc cgccccggcg ggccgcacta ccagctcgcg gccgtagcgc
     1021 agcctcacct cggtaagctg ctgtgcgcgc gcggggccat cccagagggg gacgggctgc
     1081 tgcgcgagaa tgtcgtaaag gtcgggcgcc cgccgcgctg ccgcgcccgg cggcgaaatg
     1141 gcggagggcg gcgaagagac tgccgcgggc gtgtagaagg cgtcgaggcg cacgcgccac
     1201 tcctgctgta ggaacggcgg gcccgtggcg aacgcgcccg gcggcgagag cggcgacgag
     1261 gggccgccgc ccccggaagt gaaatcgagc ggctcggggt aagcgaacag gagagcgacg
     1321 cggccctggg cgtccgcgac tgagcgcccg agcagcctgc cgttcatctt cgcttccagc
     1381 acggcccaag cggcggggcc gttcgtgctc gtgtccccga gctccgtgcg aaggacggcc
     1441 agggcctgcg gcacggggcg cgtcgggctc gcgtagagcg ggacggccgt ctccggcgcg
     1501 agcctctctc ggccgggcgg gtgctgccag cgcatcaggc cgcgcaccgg caaatccgcg
     1561 tcgagcgtga atggcaggaa gcggccctcg tagtcggcca cctcgacgac gaagggggcg
     1621 cggggcgggg ggctctgcca gaactcctcg tcgcccgcgc cgcgctctat atcgccgagc
     1681 ccgtaggcgt ggtgcaggac gaaagtcccg gagcggtttg ctaccgcgcg agtcggccgc
     1741 cccgcgccgt gcgcggggta ggccgtgacg gaaaggccgc cgctcactat ctcgcccgag
     1801 acggtgtccc agaagcgcac cccgagcggg gcgacgaatg agagcctttc tgtgagccgg
     1861 aaagcctcta tcaacggggc agctccttcc cgtagtcgaa gacccgcgtc tgcacgggct
     1921 cgtgctcgga aatctccacg tcggactcga tgaggagcat ccgggcgatg tatccgaccg
     1981 agagttgctg gttagccttg ttcacgcgga agccttccca gaggttgttc atgtcctgca
     2041 cggagagcgc gtcgaagatg agttcgacgg actcgccggg gcggaaggcg tccgattcgg
     2101 ggccgtagtg gttcagcagc cccgagggca gcgacggcag attctcaagc tcgcgcagcg
     2161 tccagcccag caggcgctgc tgcatctcgg ccgtctgcgc ccatgccgtc agtaggtaga
     2221 agaggtcgag agggagcggc ggtcgggagc gcgtgccgtc gggcctcact gtcggcggaa
     2281 ggttgcggcg gccggtcctg acggccacgc ggtagaggaa gagcgagatt ccctcgggca
//
LOCUS       DASPKR010000498         2782 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1753432, whole genome shotgun sequence.
ACCESSION   DASPKR010000498 DASPKR010000000
VERSION     DASPKR010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2782)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2782
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1753432"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..379
                     /locus_tag="VD968_13370"
     CDS             <1..379
                     /locus_tag="VD968_13370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15427.1"
                     /translation="KRPNSKQTITWNKARTVVVGYRGKVWIDRELARVLRIESDATDI
                     PADFPVTATRRAVDYNWVNIPGKGDYLLPTRAVLEMTVLSGSQQYQSRNDIRFRNYQK
                     YGSEVIIIEEDVVDEEVPEKPQQ"
     gene            complement(491..1741)
                     /locus_tag="VD968_13375"
     CDS             complement(491..1741)
                     /locus_tag="VD968_13375"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF014164.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HYE15428.1"
                     /translation="MKRLLFSAIPAAAAALLLASCATTAPPADAPAAKLVSEKAAPTA
                     KKPPVDLEQLAQKLVTQSAGVKEGDIVLISGGAHDVELLENIAVNVRKAGAFPLIDIG
                     SDRLTKRMFTDVPEKYDSQLNELGMKLAEIADVTINVDSNLTEGLLADVDPKRLAARA
                     KAGAPIGEAFRKRNVRSVDVGNGFYPTAWRAARYGMPEDELVKTFWEGVNVDYTSLQA
                     RGEQVKATLGAGNELHVTDPNGTDLKVRVQGRPVFVSDGIISPEDAQKGGAAVNLFLP
                     AGEVYVAPVPGTAEGKVVRPREFYQGKEIQNLTMTFAGGKLTSLTGSGPGFEKMKAEY
                     DASGEGKDLFAVVDLGINPNVKLPAASPVGNWVPAGTITVGVGNNTWAGGDNKVPYGY
                     FISLTGSNVTLDGRAIIENGQLKI"
     gene            complement(1911..2681)
                     /locus_tag="VD968_13380"
     CDS             complement(1911..2681)
                     /locus_tag="VD968_13380"
                     /inference="COORDINATES: protein motif:HMM:NF028180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15429.1"
                     /translation="MIDQFIAPGVDKWQQPSRLVLLLPHGYEGQGPEHSSARLERYLQ
                     LCAENNMQVCYPTTPAQYFHLLRRQVKQEAARPLVVMTPKSLLRLPAAVSPVEEFTAG
                     GFRPVIDDGEVQDRSAVRRVVLCSGKVFYDLAAARKKSGDASVAIVRLEQFYPFPEQA
                     LRETFASYPSATQLVWAQEEPKNMGGWAFVEPRLMNMLPRCERPYYVGRAASASPATG
                     SYAVHEMEQRKLVDDALTTDAPFISGASTARYAGQADS"
BASE COUNT          468 a          900 c          920 g          494 t
ORIGIN      
        1 caagaggccg aactcgaagc agacgatcac ctggaacaag gcgcgcactg tcgtggtcgg
       61 ctaccgcggc aaggtctgga ttgaccgcga gctggcgcgc gtgctgcgca tcgagtccga
      121 cgccaccgac atccccgccg acttccccgt caccgcgacc cgccgcgcgg ttgattacaa
      181 ctgggtgaac atccccggca agggcgacta cctcctcccc acacgcgccg tcctcgaaat
      241 gaccgtgctc tccggcagcc agcagtacca gagccgcaac gacattcgct tccgcaacta
      301 ccagaagtac ggctccgaag tcatcatcat cgaagaagac gttgttgacg aagaggtgcc
      361 tgaaaaacct cagcagtagt ggccggttag taaatggtga atagggaata gtcaatggag
      421 ggccggaagc tcccacttct attcactatt caccattcac catttactaa tttgtcacct
      481 gtcaccttct tcagatttta agctgtccat tctcgatgat cgcgcgcccg tcgagggtga
      541 cgttgctgcc cgtcagcgag atgaagtagc cgtaggggac cttgttgtcg ccgccggccc
      601 aggtgttgtt gccgacgccg acggtgattg tgcccgccgg gacccagttg ccgacggggc
      661 tcgccgcggg cagcttgacg ttcgggttga tgccgaggtc aacgacggcg aagaggtctt
      721 tgccctcgcc gctggcgtcg tactcggcct tcatcttctc gaagccgggg ccggaaccgg
      781 tgagcgaggt gagcttgccg ccggcgaacg tcatcgtcag gttctgaatc tccttgccct
      841 ggtagaactc cctggggcgc acgaccttgc cctcggccgt gccggggacg ggcgcgacgt
      901 agacctcgcc cgccggcagg aagaggttca ccgccgcgcc ccccttctgc gcgtcttcgg
      961 gcgagatgat gccgtcgctc acgaagacgg ggcggccctg cacgcgcacc ttcaagtccg
     1021 tgccgttcgg gtccgtgacg tgcagctcgt tgccggcgcc gagcgtcgcc ttgacctgct
     1081 cgccacgggc ttgcaggctc gtgtagtcaa cgttaacgcc ctcccagaag gtcttgacga
     1141 gctcgtcctc gggcatgccg tagcgggccg cgcgccaggc ggtcgggtag aagccgttgc
     1201 cgacatctac ggagcgcacg ttgcgcttcc ggaatgcctc gcctatgggc gcgccggcct
     1261 tcgcgcgcgc ggcgaggcgc ttcgggtcaa cgtcggcaag cagcccttcg gtcaggttgc
     1321 tgtcaacgtt gatggtcacg tcggctatct cggcgagctt catccccaat tcgttcaact
     1381 gcgagtcgta cttctccggc acgtcggtga acatgcgctt ggtgagacgg tcgctgccga
     1441 tgtctatgag cgggaaggcg ccggccttgc gcacgttgac ggcgatgttc tctaaaagct
     1501 ccacgtcgtg cgcgccgccg gagatgagga ctatgtcgcc ctccttgacg cccgcgctct
     1561 gcgtgacgag cttctgcgcg agctgctcaa ggtcaacggg cggcttcttc gccgtcggcg
     1621 cggccttctc cgaaaccagc ttcgcggccg gggcgtcggc gggcggcgcc gtcgtcgcac
     1681 aggaggcgag cagaagcgcg gcggccgcgg cggggatggc ggagaacagc aatcttttca
     1741 tcgggagaac tcctttcaaa gggcaagaga atttgaacag cgggatcggg gcgtgcagct
     1801 tctacgccaa atccgccggg aagtcaacgt ttcaggcgac gcagttctat atacgcttta
     1861 gttttcgcgg gcggattcca gtaacaccgc ccgcacgagc gaagccgcgc tcacgagtcg
     1921 gcctggccgg cgtagcgcgc ggtggaggcg ccggagatga agggggcgtc ggtggtgagc
     1981 gcgtcgtcca cgagcttgcg ttgctccatc tcgtgcacgg cgtaggagcc ggtggcaggg
     2041 ctcgccgagg cggcgcgccc gacgtagtag gggcgctcgc agcgcgggag catgttcatc
     2101 aaacgcggct cgacgaaggc ccagccgccc atgttcttcg gctcctcctg cgcccagacg
     2161 agctgcgtgg ccgaagggta ggaggcgaac gtctcccgaa gcgcctgctc ggggaacggg
     2221 tagaactgtt cgaggcgcac tatagccacc gacgcgtcgc ccgacttctt ccgcgccgcg
     2281 gcgaggtcgt agaagacctt gccgctgcaa agcacgacgc ggcggacggc cgagcggtcc
     2341 tgcacctcgc cgtcatctat gacggggcgg aagccgcccg ccgtaaactc ctcgacgggc
     2401 gagacggcgg cgggaagtct cagcagactc ttcggcgtca tcacgacgag cggccgcgcc
     2461 gcctcctgct tgacctgccg cctgagcagg tggaagtact gagccggcgt cgtggggtag
     2521 cagacctgca tgttgttctc ggcgcagagc tggaggtagc gttcgagccg ggcggaggag
     2581 tgctccggcc cctgcccctc gtagccgtgc ggcagcagca ggacgagccg cgacggctgc
     2641 tgccacttgt ccacgccggg cgcgatgaac tggtcgatga tgacctgcgc gccgttcgag
     2701 aagtcgccga actgggcctc ccagagggtc agcccgcgcg ccgtgacgac cgagtagcct
     2761 tactcgaagc ccatcacgcc ct
//
LOCUS       DASPKR010000499         8263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1885363, whole genome shotgun sequence.
ACCESSION   DASPKR010000499 DASPKR010000000
VERSION     DASPKR010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8263)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8263
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1885363"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..869)
                     /locus_tag="VD968_13385"
     CDS             complement(<1..869)
                     /locus_tag="VD968_13385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15430.1"
                     /translation="MREADRQRIAKPYMWLVIALGAVAAAYTATRLDVFELGLRFALL
                     ALLTLCFGSRVYVQIPRVKSTISVSDTFVLLALLLFDGDAAILLAAADAFFSSLRITK
                     KRLTIAFNSAVYVCSTFLTVWTMRSAFGEISSLTGSGDNSRYLVAVCLMALVQYVSNS
                     GMIATGVALKSGQPVWQMWRQNFLWTSITYFAGASAAGIIVKLIQIFGLYAFLATAPI
                     IAIVYFTYCTYLKNVEASARQAELAREHALEVQQHMQALRDSEERFRSAFDYATIGMA
                     VVSLEGRWLQVNHS"
     gene            complement(1186..3399)
                     /locus_tag="VD968_13390"
     CDS             complement(1186..3399)
                     /locus_tag="VD968_13390"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYE15431.1"
                     /translation="MKRTLTYCPTRLTAFALLAAAALGIILTGSAPRGAGAQSSQGQK
                     VGFDLKKKLASAAFYDDVNVIVAPASTWTSELDSDLAGKGATQKAAYKSFPFRAVRMK
                     AKDVEALAGRSDVSFVALDREVKKLGHVGLTTGADAARALGGSTTPFDGTGVGIAVLD
                     SGIDPAHVAFQDANRNSRIVFSKDFTGEGRTDDPYGHGTHVAALAAGNDAVSSGAYTG
                     VAPNARLVNLRVLDSQGRGQISSVLAALDWVMANRTNPAYNVRVVNMSLGAPAVDTYR
                     VDPLCLAVRRLVDAGVVVVAAAGNEGKDGSGDKVYGQIHSPGAEPSAITVGAANTFGT
                     DYRSDDQVATYSSRGPTRGFRTASDGTRHYDNLLKPDMVAPGNRLIDAQANQNLLVTQ
                     NTSLDANVSGSVSREQMYLSGTSMATPVVAGAAALMLQANSTLTPNLVKTLLSYTAQP
                     LANFNQFEQGAGLVNVEGAVRLARLVRRDLTASTAVGAPLLTAAAPTPQTTIATQTFQ
                     WGQGVVLDHTFATGSQLITSYQKIYGLGVLLADGTVEANGALMADGTLMSDGVLLSDS
                     ILWSSGALMADGAFFCATGVLLSDGVLLSDGVLLSDGVLMGDGVLLSDGVLLADVSAM
                     AGSALIYGDVTSSMQAVADPAPKAPTSLTAKAASTTQINLSWVDTSTNEDGFLVERCA
                     GSNCTSFAQVAQLGRNVKTFSNTGLTRGTAYRYRVRAYHSGASSAYSPIAGATLK"
     gene            complement(3426..5465)
                     /locus_tag="VD968_13395"
     CDS             complement(3426..5465)
                     /locus_tag="VD968_13395"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HYE15432.1"
                     /translation="MKLRPHSRTLTSLTGAALALSLLAIVPGAGAYGDRAGGRTSKFH
                     KEAEQVTSKSLAGRERPAPRRGADKLSPDLLAAVHGKAAKRGGTVRVILEADDVDDAE
                     LRTLMRLHGATVRGEMRQLGMLEVEMPLAAAERVAGAAAARHISLDREVRTFGHVVVT
                     TGAAAMRAQADNASLMGDGIGVAVLDSGIFRDHDSLGNTKFERDFTGEGVTFDRYGHG
                     SHVAGLLSNRNNFEGQYLGVAEKVDVINLRVLDSWGVGRVSSVLKALSWILEPTDPTK
                     PAGEKNFQRYRIRVVNMSLGAPAVESYRVDPLCLAVRKVVDTGIVVVAAAGNNGKDAS
                     GQKVYGLIHSPGNEPSAITVGASNTFGTDARSDDGVTTYSSRGPTRSHSTAPDGTLHY
                     DNVLKPELVAPGNRLVAPEAYTREKIGGADVILPNLLIKENPQLHARDGGDYKKRMMY
                     LSGTSMSAPLVAGAAALMLQANPRLTPNMVKMILQYTAQPLAGFNQFEQGAGQLNVEG
                     AVRLAKLVRSDLTKTTPLGTPMLSGSAPAPMTTIAGSSFVWSQGLEAGQVLAVGADLI
                     TKYQRVYGTGFLMSDGILMSDGTPRPDGILMSDGILMSDAVLISDGGPLGGGPVFLPS
                     GFLMSDGILMSDGFLMNDGILMSDGFLMSDGILMSDAYVQAMGALVKGDDTPHMQ"
     gene            complement(5890..5965)
                     /locus_tag="VD968_13400"
     tRNA            complement(5890..5965)
                     /locus_tag="VD968_13400"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5930..5932),aa:Ala,seq:cgc)
     gene            complement(6038..8134)
                     /locus_tag="VD968_13405"
     CDS             complement(6038..8134)
                     /locus_tag="VD968_13405"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HYE15433.1"
                     /translation="MKATLLIALTFLALAPRAAAQVTAVAPPPAEKPPAERRRETFEI
                     VWQTVRDHHFDPTFGGVNWDAVRAEFSPRVGRAQSDGELHRLLQEMLNRLGQSHFNIV
                     PPEAIPALGGEDDAEAGVEEEGGGEEPELPSRDGLLVTERLTHGVGIDVRVINNSVVV
                     TRVEPQSPAARAGLRPGFVLRSIDGRPTRTILRYIRQAVVFEPSARNQIPAEIQVGFL
                     NGPPGSRVAITYLDGRDRLRRAVLARERLNGEMSQPVQSLPPQFVEFEAKRLRRGIGY
                     IRFNVFAGGVMEKFCEALRSMEGAPGVIIDLRGNRGGVIGMIYGMGGLLQPRSVSFGT
                     MSMRGGRLEFSVFPQRRPYTGQVVVLLDGSSQSASEIFAAGLKETGRALVIGERSAGA
                     TLPSVAKELPTGAILQYAFADFTTPHGNRLEGVGVKPDIPVRLDRRSLLRGIDPQLEA
                     AINAIEPPVSAGLPRSIIVPAGGDETGEFEKPKEVEAAPFPPEVERILARYVEAIGGR
                     AAIEAVKSRASKGTFEGSFSGIAVAGTVEIAEKAPNKSVAVISLAGFGEVRRGFTGEY
                     GYEQTALVGFREIEGHELEDMRLSSDLHWAVNFRRNYRTMVLKGVEKLEGGEAHMVEA
                     TTAAGVPTRLYFDAKTGLLVRRDETYLSDYREVDGVRIPFLHRSGTTVLALKEVRHNA
                     PLEDAAFAERKDCFTR"
BASE COUNT         1265 a         2694 c         2932 g         1372 t
ORIGIN      
        1 gagtggttga cctgtagcca gcggccttcg agcgagacga cggccatgcc gatggtcgcg
       61 tagtcgaagg cgctgcggaa gcgctcttcg gagtcgcgca gcgcctgcat gtgctgctgg
      121 acttcgagcg cgtgctcgcg cgcgagctcg gcctgccggg ccgacgcctc tacgttcttg
      181 aggtaggtgc agtaggtgaa atagacgatg gcgattatcg gcgccgtggc gaggaaggcg
      241 tagagcccga aaatctgtat gagcttgacg atgatgccgg cggccgaggc cccggcgaag
      301 taggttatcg aagtccagag gaagttctgc cgccacatct gccagacggg ctgccccgac
      361 ttcaatgcca cgcccgtcgc tatcatcccc gagttagaga cgtactgcac gagcgccatc
      421 aggcagacgg cgactaggta gcgcgagttg tcgcccgacc ccgtgagcga gctgatctcg
      481 ccgaaggcgc tgcgcatcgt ccagaccgtc aggaacgtcg agcagacata gacggccgag
      541 ttgaaggcga tggtcagccg cttcttcgtg atgcgcagcg acgagaagaa cgcgtcggcg
      601 gcggccagca gtatggcggc gtcgccgtcg aatagcagaa gcgccagcag gacgaaggtg
      661 tccgagaccg aaatcgtgct cttgacgcgc ggtatctgga catagacgcg cgagccgaag
      721 cagagcgtga gcagcgcgag cagcgcgaac cgaagaccca gctcgaagac gtcgagccgg
      781 gtggccgtgt aagcggcggc cacagccccg agggctatga ccagccacat gtacggcttc
      841 gcgattctct gtcggtctgc ttcgcgcatc ggttgtctaa ccgtaaaagc cttcgtgctg
      901 agagtttcta ctgtcgcctg cgcggggcgg gcgtccggga tggactaatg gcaaccgttg
      961 tgccgggcgc ggggggcggt ttttgcaggg gaaaagtggg gtggggggag gcccgaaggc
     1021 gggcttcggt cagcctgacg aggcggcccg gtcagcctga cgtgaaagcc acacactttg
     1081 acctccccgc ggaggcgagc gtgcggccga ggccttcggt agtgcgggcc gggcgccgcg
     1141 gggccgagac cctaaggtcc cgagccccgc ggcgccgccc cgcgtttatt tcagcgtggc
     1201 gccggctatc gggctgtagg cggagctcgc gccgctgtgg taggcgcgga cgcggtagcg
     1261 gtacgcggtg ccgcgcgtga gccccgtgtt ggagaacgtc ttgacgttgc ggccgagctg
     1321 ggccacctgc gcgaagctcg tgcagttcga gcccgcgcag cgctcgacga ggaacccgtc
     1381 ctcgttcgtc gaggtgtcaa cccagctaag gttgatctgg gtcgtagagg cggccttggc
     1441 cgtgagcgag gtcggcgcct tcggcgcggg gtcggcgacg gcctgcatgg atgacgtcac
     1501 gtcgccgtag atgagcgcgc tgcccgccat cgcgctcacg tcggcgagga gcaccccgtc
     1561 ggagaggagc acgccgtcgc ccatgagcac gccgtcggag agcagcacgc cgtcggagag
     1621 cagcacgccg tcggagagca gcacgcccgt tgcgcagaag aaggcgccgt cagccatgag
     1681 cgccccgctg ctccacagta tgctgtcgga gaggagcacg ccgtccgaca tgagcgtgcc
     1741 gtcggccatg agcgccccgt tcgcctcgac ggtgccgtcg gcgagcagca cgcccagccc
     1801 gtaaatcttc tggtaggacg ttatcaactg cgaccccgtg gcgaaggtgt ggtcgagcac
     1861 gacgccttgg ccccactgga aggtctgggt ggcgatggtc gtctgcggcg tgggcgcggc
     1921 ggccgtaagg agcggggcgc cgacggccgt cgaggccgtc aggtcgcggc gcacgagcct
     1981 ggcgagccgg acggcgccct ccacgttgac gagccccgcg ccctgctcga actggttgaa
     2041 gttcgcgagc ggctgggccg tgtaggagag cagcgtcttg acgaggttgg gcgtgagcgt
     2101 cgagttggcc tggagcatca gggcggcggc gccggccacc acgggcgtcg ccatcgaagt
     2161 ccccgacagg tacatctgct cgcgggagac ggagccgctc acgttcgcgt cgagcgaggt
     2221 gttctgcgtg acgagcaggt tctggttggc ctgcgcgtcg ataaggcggt tcccgggcgc
     2281 gaccatgtcg ggcttcaaga ggttgtcgta atggcgggtg ccgtcggagg ccgtccggaa
     2341 gccgcgggtc ggcccgcgcg agctgtaggt ggcgacctgg tcgtcggagc ggtagtcggt
     2401 gccgaaggtg ttggcggcgc cgaccgtgat ggccgacggc tccgcgccgg ggctgtgaat
     2461 ctgcccgtaa accttatcgc ccgagccgtc cttgccctcg ttgccggcgg cggccacgac
     2521 gaccacgccg gcgtcgacca gccggcgcac cgcgaggcag agcgggtcga cgcggtaggt
     2581 gtcgacggcc ggggcgccca ggctcatgtt aactacgcgg acgttgtagg ccgggttcgt
     2641 gcggttcgcc atcacccagt cgagcgccgc gagcaccgag gagatttggc cgcgcccctg
     2701 cgagtcgagc acgcgcaggt tgacgaggcg agcgttcggc gcgacgcccg tgtaggcgcc
     2761 ggaggagacc gcgtcgttgc cggcggcgag cgcggcgacg tgcgtgccgt ggccgtaggg
     2821 gtcgtcggtg cgcccctcgc ccgtgaagtc cttgctgaag acgatgcgcg agttcctatt
     2881 cgcgtcttgg aaggcgacgt gggccgggtc gatgccggag tcgaggacgg cgatgcccac
     2941 gccggtgccg tcgaagggcg tcgtggagcc gccgagggcc cgggccgcgt ccgcgccggt
     3001 cgtgagcccg acgtggccga gcttcttcac ctcgcggtcg agcgcgacga aggaaacgtc
     3061 agagcggccc gccagggcct ccacgtcctt cgccttcatg cgcacggcgc ggaaggggaa
     3121 gctcttgtag gccgccttct gcgtggcgcc cttgccggcg aggtcggagt cgagctcgct
     3181 cgtccaggtg gaggcggggg ccacgatcac gttgacgtcg tcgtagaagg cggcggacgc
     3241 gagcttcttc ttaaggtcga agcccacctt ctgcccctgc gacgactggg cgccggcccc
     3301 gcggggcgcg gagcccgtca gaattatgcc gagggcggcg gccgccagga gcgcgaaggc
     3361 cgtcagccgc gtcggacagt atgtgagtgt gcgtttcatt tgcttttccc tctcaacgga
     3421 acccattact gcatgtgcgg cgtgtcgtcg cccttcacca gcgcgcccat cgcctggacg
     3481 taggcgtcgc tcatgaggat gccgtcactc atgaggaacc cgtccgacat cagaatcccg
     3541 tcgttcatga ggaacccgtc cgacataaga atgccgtccg acatcaggaa gccgctcggg
     3601 aggaagacgg ggccgccgcc tagcgggccg ccgtcgctta tgagcaccgc gtcggacatc
     3661 agaatcccgt ccgacatcag aatcccgtcg ggccggggcg tgccgtccga catcagaatc
     3721 ccgtccgaca tcaggaagcc cgtgccgtaa accctctggt acttcgttat aaggtcggcg
     3781 cccacggcca agacctgccc ggcctcgagc ccctgcgacc aaacgaagga cgagccggcg
     3841 attgtcgtca tcggcgcggg agccgagcct gagagcatgg gggtgccgag tggggtcgtc
     3901 ttcgtcaggt cgctgcgcac gagcttagcc agccgcacgg cgccctctac gttcaactgc
     3961 ccggcgccct gctcgaactg gttgaagccg gcgagcggct gcgccgtgta ctgaaggatc
     4021 atcttgacca tgttcggcgt gagccggggg ttggcctgga gcatcagggc ggcggcgccc
     4081 gccacgagcg gcgccgacat cgaagtcccc gacaggtaca tcatccgctt cttgtagtcg
     4141 ccgccgtcgc gcgcgtggag ctgcgggttt tccttgatca ggaggttcgg caggatcacg
     4201 tccgcgccgc ctatcttctc cctcgtgtag gcttcggggg cgacgaggcg gttcccgggg
     4261 gcgaccagct cgggcttgag aacgttgtcg tagtggagcg tgccgtccgg ggcggtcgaa
     4321 tggctgcgcg tcggcccgcg cgagctgtag gtggtgacgc cgtcgtcgga gcgggcgtcg
     4381 gtgccgaagg tgttcgaggc gccgaccgtt atggccgagg gctcgttgcc cggcgagtgt
     4441 atgaggccgt aaaccttctg cccggaggcg tccttgccgt tgttgccggc ggcggcgacg
     4501 acgacgatgc cggtgtcaac caccttgcgg acggcgaggc agagcgggtc gacgcggtag
     4561 gactcgacgg ccggcgcgcc caggctcatg ttgacgacgc gtattctgta tctctggaag
     4621 ttcttctcgc ccgcgggctt ggtcgggtcg gtcggttcca gaatccagct cagggctttg
     4681 agcacggagg agactcggcc cacgccccac gagtcgagca cgcgcaggtt gattacgtcc
     4741 accttctcgg cgacgccgag gtactgcccc tcgaagttgt tcctgttcga gagcagcccg
     4801 gcgacgtgcg aaccgtggcc gtagcggtcg aaggtgacgc cctcgcccgt gaagtcgcgc
     4861 tcgaacttgg tgttgccgag cgagtcgtgg tcgcggaaga tgccggagtc gagcacggcg
     4921 acgccgatgc cgtcgcccat tagggaggcg ttgtccgcct gcgcgcgcat cgcggccgcg
     4981 ccggtcgtga ctacaacgtg gccgaaggtg cgcacctcgc ggtcaagaga gatgtggcgc
     5041 gcggccgcgg cgccggcgac gcgctcggcc gccgcgagcg gcatctcgac ttcgagcatg
     5101 ccgagctgtc gcatctcgcc cctgaccgtc gcgccgtgca ggcgcatcag cgtgcgcagc
     5161 tcggcgtcgt ccacgtcgtc ggcctcgagg atgaccctca cggtgccgcc gcgcttcgcc
     5221 gccttgccgt gcacggccgc gagcaggtcg ggcgagagct tgtcggcgcc cctgcgcggc
     5281 gcagggcgct ccctgccggc caggctcttg gacgtgacct gctcggcttc tttgtggaat
     5341 ttggacgtgc ggccgccggc cctgtcgccg taggccccgg cgccggggac tatagcgagc
     5401 agcgagagcg ccagcgcggc gcctgtgagc gacgttaagg tgcgagagtg gggcctcagc
     5461 ttcatgctca ttacctgtcc tttatctctg tcgtgaagaa cgggcggggc cgctctccgg
     5521 gtagagcacg cgcgagcgtg cgccgaccct tctggcagct tgcgtgccag cggcgctttc
     5581 ttcaggaaag gcgggaaaag cggggattcg aaagggaagg gagtcgccgg ggcgttcagc
     5641 cttttttcag tctgaccggg cgcgccttca gtctgaccga acgcgccgcc cgcccggcat
     5701 gaaaaaagaa gacggcggga ctgctcccgc cgtccgatgc gcaagactct agtggatcac
     5761 gcacgcgacg aacgcgacca cgaaacaggc agtccgcagt ttgggtacgc tcgccgcgcg
     5821 gcttggcaac gtattggcaa cgcaaacgaa aacggcaggg gcggccctgc cgtaagtcct
     5881 tgattctttt ggtggagcag agggggatcg aacccctgac ctccgcattg cgaacgcggc
     5941 gctctcccag ctgagctact gccccatgcg agtagcgata ttagaagtcg gcgggcgctt
     6001 tcgtcaagcg aggcggccgg cacgcgcggg ccatgcttca gcgcgtgaag cagtccttgc
     6061 gctccgcgaa ggccgcgtct tcgagggggg cgttgtggcg gacttccttg agcgcgagca
     6121 cggtcgttcc ggagcggtgg aggaagggga tgcggacgcc gtcaacctct cggtagtctg
     6181 agaggtaggt ctcgtccctg cgcacgagca gccccgtctt cgcgtcgaag tagaggcgcg
     6241 tggggacgcc cgccgcggtc gtggcttcga ccatgtgcgc ctcgccgccc tcgagtttct
     6301 cgacgccctt tagcaccatc gttctgtagt tgcggcggaa gttgacggcc cagtgaaggt
     6361 cggacgatag ccgcatatct tcaagctcgt gcccttctat ctccctgaag cctacgagcg
     6421 cggtctgctc gtagccgtac tcgcccgtga acccgcgccg tacctcgccg aagcccgcca
     6481 ggcttatgac ggccacggac ttgttcggcg ccttctccgc tatctcgacc gtccccgcga
     6541 ccgctatgcc cgagaacgac ccctcgaacg tccccttcga ggcgcggctc ttcacggctt
     6601 caatcgcggc ccttccgcca atcgcctcga cgtagcgcgc gagtatgcgc tcgacctccg
     6661 gcgggaacgg cgcggcctcg acctccttcg gcttctcgaa ctcgcccgtc tcgtcgcccc
     6721 cggccgggac gatgatcgag cgcggcaagc ccgcgctgac gggcggctcg attgcgttta
     6781 tggcggcttc gagctgcggg tctatgccgc gcaggagcga gcggcggtcg agccggacgg
     6841 ggatgtcggg cttgacgccc acgccttcga ggcggttgcc gtgaggcgtc gtgaagtccg
     6901 cgaaggcgta ctggagtatg gcgcccgtcg gcagctcctt cgcgaccgag gggagggtgg
     6961 cgccggcgct gcgctcgccg atgacgagcg ctcggccagt ctccttgagc ccggcagcga
     7021 atatctcgct cgcagactgg ctcgacccgt ccaggaggac gacgacctgc cccgtgtacg
     7081 gcctgcgctg cgggaagact gagaactcga ggcggccccc cctcatgctc atcgtgccga
     7141 aggagacgct cctcggctga aggagccctc ccatcccgta gatcatgccg atgacgccgc
     7201 cgcggttgcc gcgcaggtca atgatgacgc cgggcgctcc ctccatcgag cgcagcgcct
     7261 cgcagaactt ctccatgacg ccgccggcga agacgttgaa gcgtatgtag ccgatgccgc
     7321 ggcgcaggcg cttcgcctcg aactctacga actgcggcgg cagcgactgc acgggctgcg
     7381 acatctcccc attcagacgc tcgcgcgcta gcacggcgcg gcgcaggcgg tcgcgcccgt
     7441 cgaggtaagt tatcgccacg cgcgagcccg gcgggccgtt caggaacccg acctgtatct
     7501 cggccggaat ctggttgcgc gccgaaggct cgaagacgac ggcctgcctg atgtagcgga
     7561 gtattgtgcg cgtcggccgg ccgtctatgc tcctgagcac gaagccgggc cgcagacctg
     7621 cgcgcgccgc cggcgactgc ggctcgacgc gcgtgactac gaccgagttg ttgatgacgc
     7681 gcacgtcaat cccgacgccg tgcgtcaatc gctcggtcac gagcagccca tcgcgcgagg
     7741 gaagctcagg ctcttcgccc ccgccttctt cttcgacccc ggcctccgca tcatcctcgc
     7801 cgccgagcgc tgggatggct tcgggcggca cgatgttgaa gtgagactgg ccgaggcggt
     7861 ttagcatctc ctgaagcagg cggtgaagct cgccgtcact ctgcgcgcgc ccgactcgcg
     7921 gcgagaactc cgcgcgcacg gcgtcccagt tgacgccgcc gaaggtcggg tcgaagtggt
     7981 gatccctgac cgtctgccag actatctcga aggtctcacg ccgcctctcg gccgggggct
     8041 tctccgctgg cggaggcgcg acggcagtca cctgcgccgc cgcgcgcggc gccagcgcca
     8101 ggaacgtgag ggcgattaac agcgtcgctt tcatcattag ttaaatcttg cgcgaggccg
     8161 cttctatcac ctcttcgagc cgctcggcgc ggcggccgcc gccctgcgcc atgtcgggac
     8221 ggccgccgcc ccggccttcg agcgcggcgc tcgcctcgcg cac
//
LOCUS       DASPKR010000500         2311 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1885586, whole genome shotgun sequence.
ACCESSION   DASPKR010000500 DASPKR010000000
VERSION     DASPKR010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2311)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2311
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1885586"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..449
                     /locus_tag="VD968_13410"
     CDS             <1..449
                     /locus_tag="VD968_13410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15434.1"
                     /translation="LVPLMLLSAAAPPPRGMSRDYLAERSVLTEALPALRADVAPNSI
                     VVARHGDEFLVTALMGLPSQQTPPNDSSRYGTVYWLLHQAPPQTLDGSTIVLREGADG
                     RFVGLLEDGRLRAKLGGLSDPERRRLFARNPHLRRAFAPKKERRKP"
     gene            446..1039
                     /locus_tag="VD968_13415"
     CDS             446..1039
                     /locus_tag="VD968_13415"
                     /inference="COORDINATES: protein motif:HMM:NF013661.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan recognition family protein"
                     /protein_id="HYE15435.1"
                     /translation="MTAPARPTRLKLPAVALALLLACLAGLALPSYMNTMTPAGIVIH
                     HTAVTTLGDGSPLDIEALDRIHERRGYGAFYWGRTYHIGYHYLILPDGTVQRGRPERL
                     RGAHAQGFNDSVGVCLVGNFSSALNPNGERGLAEPTGAQMRALARLCRDIQGRYRIPP
                     ERVRLHKDVNPSTECPGDRLSADGLLSELAAAARRPE"
     gene            complement(1063..1506)
                     /locus_tag="VD968_13420"
     CDS             complement(1063..1506)
                     /locus_tag="VD968_13420"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HYE15436.1"
                     /translation="MRVSRLWAVVAAVVLIGAALTTAFASLGQSGGQPAVVSAAAPAY
                     PPSAAAASASGEVAVEVGINAKGEVVSARSLEGHALLRGAAEAAARKWKFAPAADGAS
                     TGTARLTFVFRLREKGDDRPGLSAVFRPPYEVEVSPPAVIEKSNN"
     gene            1620..2114
                     /gene="coaD"
                     /locus_tag="VD968_13425"
     CDS             1620..2114
                     /gene="coaD"
                     /locus_tag="VD968_13425"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HYE15437.1"
                     /translation="MRRAIYPGSFDPVTNGHLDIIERGCKLFDEIIIAILVNPEKQAL
                     FTIEERREMIEEALGEIEAGGCRLAVDSFRGLLVRYAVERGADAIVRGIRAVSDYEYE
                     LQMALMNRRLEPRIETVFMMSAEAYSYVSSRLVKEVYHLGGTIEGLVPASVEARMRGK
                     LSKG"
BASE COUNT          376 a          820 c          748 g          367 t
ORIGIN      
        1 cgctcgtgcc gctcatgctt ctgagcgccg ccgccccgcc gccgaggggg atgagccgcg
       61 actatctggc cgagcgctcg gtgctgacgg aggcgctgcc cgcgcttcgc gcagacgttg
      121 cgccgaactc tatcgttgtc gcgcgccacg gcgacgagtt cctcgtgaca gcgttgatgg
      181 ggctcccctc acagcagacc cccccgaacg attcttcgcg ctacggcact gtttactggc
      241 tgctgcacca ggcgccgccg caaacgctcg acggctcgac gatagtgctc cgcgagggcg
      301 cggacggccg cttcgttggg ttgttagagg atggccgctt gcgtgcgaag ctgggcggcc
      361 tgagcgaccc ggagcggaga cggctcttcg cacggaaccc gcacctgcgc cgggccttcg
      421 cgcccaaaaa ggagaggcgt aaaccgtgac ggccccggca cgaccgacgc gtctgaaact
      481 gccggcggtg gcgctggcgc tgctgctggc ctgcctcgcc ggcctcgccc tgccttctta
      541 catgaacaca atgacgcccg cgggcatcgt cattcaccac actgccgtga cgacgctcgg
      601 cgacgggagc cctctcgaca tcgaggcgct cgaccgaatc cacgagcggc gcggctacgg
      661 cgcgttctac tgggggcgca cttaccacat cggctaccac tacctgattc tcccagacgg
      721 cacggttcag cggggccgcc ccgagcgcct ccgcggggcg cacgctcagg gcttcaacga
      781 cagcgtcggc gtctgcctcg tagggaactt cagttcggcg ctcaacccga acggcgagag
      841 ggggctggcc gagccgaccg gggcgcagat gcgcgccctc gcgcgcctat gccgcgacat
      901 tcagggccgc taccgaatcc cgccggagcg cgtgcggctc cacaaggacg ttaacccctc
      961 gacggaatgc ccgggcgaca ggctcagcgc cgacggactg ctctcggagc ttgccgccgc
     1021 cgccagaagg ccggagtgac ggcggcgagg tttacgctgc ggtcagttgt tggatttttc
     1081 gatgacggca ggggggctga cctcgacctc gtagggcggc ctgaagacgg cggagaggcc
     1141 gggccggtcg tctccctttt cgcgcaggcg gaagacgaac gtgagccgcg ccgtgccggt
     1201 cgaggcgccg tccgcggcgg gcgcgaactt ccattttcgc gccgcggcct cggccgcgcc
     1261 tcgcagcagg gcgtggccct caaggctccg ggccgatacg acttcgccct tcgcgttgat
     1321 gccgacttcg acggcgactt cgcccgacgc ggatgcggcc gccgcggacg gcggataggc
     1381 cggggccgcg gccgagacca cggccggctg gccgcccgac tgccccagcg acgcgaaggc
     1441 cgtcgtcaac gccgccccga ttaaaacgac tgccgctacc accgcccaaa gtcttgacac
     1501 tctcatcact gcacctctac gcgcgaggtt agcacacccg gcaataattg tcctcgccag
     1561 ccgtgctgtg ataacttcgc ggtcgtcttt tcgcatcggg ttccggcacc tgaccttcaa
     1621 tgagacgcgc catctacccc ggctcattcg accccgtcac gaacggccac ctcgacataa
     1681 tcgagcgcgg ctgcaagctc ttcgacgaga tcatcatcgc catcctcgtc aaccccgaga
     1741 agcaggctct cttcaccatc gaggagcgac gcgagatgat cgaggaggcg ctcggcgaga
     1801 ttgaggcggg cggctgccgt ctggccgttg actctttccg gggcctgctc gtccgctacg
     1861 ccgtcgagcg cggcgccgac gccatcgtgc gcggcatacg cgccgtctcc gactacgagt
     1921 acgagcttca gatggcgctg atgaaccgca ggcttgagcc gcgcatcgag accgtcttca
     1981 tgatgtccgc cgaagcctac tcctacgtga gctcccgcct cgtcaaagag gtctaccacc
     2041 tcggcggcac aatcgaaggt ctggttcccg cctccgtcga ggcgcgcatg cgcggcaagc
     2101 tgagcaaggg ctgagcttcg cgcgcccgcg ccggaagtct cggcggcccg cgaccgtgtt
     2161 atactcgcct ccgttccacc aacatcacgc tcatgccttc gggcgtttag tccggcccga
     2221 cgacgtgagg cccaggaggt tgcgagggta tgccgagagg ggacaagtcc agctacaccg
     2281 acaagcagaa gcgacaggcc gagcacatcg a
//
LOCUS       DASPKR010000501         3737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1754267, whole genome shotgun sequence.
ACCESSION   DASPKR010000501 DASPKR010000000
VERSION     DASPKR010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3737)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3737
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1754267"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..509
                     /locus_tag="VD968_13430"
     CDS             <1..509
                     /locus_tag="VD968_13430"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HYE15438.1"
                     /translation="LRRVIERETAKHREMIKDELPLFPGVVTFVKALSRGHSLGVVSM
                     ASREAIDYVLGRAGLLEHFAVVVSAADVAACKPDPACYNRGLEFLNARRAASDVLPVR
                     AEECLVVEDSPPGILSGRAAGMRTLGVTNTVPDKALRDAGADVVTRSLADWTVDAVHH
                     VFDTSWGR"
     gene            540..1388
                     /locus_tag="VD968_13435"
     CDS             540..1388
                     /locus_tag="VD968_13435"
                     /inference="COORDINATES: protein motif:HMM:NF024762.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase-like domain-containing protein"
                     /protein_id="HYE15439.1"
                     /translation="MTPADKLLAAEARGSFAREVARPGGEIDLARAALFAGQEEEPRA
                     CDVGRCLALLEEMGAAARDRTGASAAPVEALNEYLFGELGFAGNESDYYDPRNSMLHR
                     VLGRRTGIPITLSLVYMEVGRRAGLAVEGVGLPGHFIVRARAGGQEPVLVDPFNGRIV
                     DREECQRRVDFIYGGEMTLSDEHLRPLGARPILVRLLNNLKSIYTQAQLFRRALSVVE
                     RILLVTPNDLGERRDRGLLLAQVGRLPEAIDEIQSYLNLATHAPDADEVREQLKKLRT
                     RHSMLN"
     gene            complement(1390..1689)
                     /locus_tag="VD968_13440"
     CDS             complement(1390..1689)
                     /locus_tag="VD968_13440"
                     /inference="COORDINATES: protein motif:HMM:NF024585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HYE15440.1"
                     /translation="MTYVVTEDCVDCKYTDCAAVCPVEAFHELPDRLYINPETCIDCD
                     ACVPECPVEAIFPEAALPDQYAEWLALNAEAASYPIISGKIPALFGPTCKGKPES"
     gene            complement(1770..2462)
                     /locus_tag="VD968_13445"
     CDS             complement(1770..2462)
                     /locus_tag="VD968_13445"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYE15441.1"
                     /translation="MNNRLLERLPAEEMEALRPHMERVTLMHGQHVIIPDEPIRDCYF
                     PAGCLLSLVTTMEDGSAVESGTIGREGMSGIPVILDAWRTPMPTFAQVPGDALRVRSD
                     VLREAYDRGGGLHKLLNRYMHTVIVTGSQSAACNRVHRLDTRFCKWLLMSSDGIGSDE
                     VALTHEFLAVMLGVRRSGVTEAAGRAQSAGLITYTRGRIKILDRAGLEAAACECYART
                     RAEYERLLSEGG"
     gene            complement(2549..2707)
                     /locus_tag="VD968_13450"
     CDS             complement(2549..2707)
                     /locus_tag="VD968_13450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15442.1"
                     /translation="MADPVRTDEKKCAHQKCVCMVGGEKRYCSHYCEDAADSDPTSEC
                     TCGHPGCG"
     gene            complement(2727..2912)
                     /locus_tag="VD968_13455"
     CDS             complement(2727..2912)
                     /locus_tag="VD968_13455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15443.1"
                     /translation="MSEKKRQKKDGERKDKKNQRRRESENEMVQGASAPQQARDASNL
                     TDKQPGAASTSGRNRGR"
     gene            complement(2944..>3737)
                     /locus_tag="VD968_13460"
     CDS             complement(2944..>3737)
                     /locus_tag="VD968_13460"
                     /inference="COORDINATES: protein motif:HMM:NF005214.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE15444.1"
                     /translation="FPRTDVSPKVCSGKLKDRVALVTGGDSGIGRAVAVLFAREGADV
                     ALVYLPEEQVDAEETRAAVEAEGRRALLIPGDVRESSFCQEAVEQTVGEFGKLDILVN
                     NAAFQQHQKRLEDVSLEQWDTTFRTNIYGYFYMTKAALRHLREGAAIVNCGSITGLQG
                     SKELLDYSATKGAIHAFTKSLAQNLVERRVRVNCVAPGPVWTPLNPSDKSAKDVAEFG
                     ADTPMKRPAQPEEIAPAFVFFASEADSSYVTGEIITLLGGETRAG"
BASE COUNT          577 a         1271 c         1237 g          652 t
ORIGIN      
        1 cgctgcggcg cgtaatcgag cgcgagacgg ccaagcaccg cgagatgata aaggacgagc
       61 tgccgctctt ccccggcgtc gtcacgttcg tcaaggcgct ctcgcgcggc cactcgctcg
      121 gcgtcgtcag catggcctcg cgcgaggcga ttgactacgt gctcgggcgc gccgggctgc
      181 tcgaacattt cgccgtagtc gtcagcgccg cggacgtggc ggcctgcaag cccgacccgg
      241 cctgctacaa ccgcgggctg gagttcctga acgcgcggcg cgccgcctcg gacgtgctgc
      301 ccgttcgcgc cgaagagtgc ctggtcgtcg aggactcgcc gcccggcata ctctcggggc
      361 gggccgcggg catgcgcacg ctaggcgtca cgaacaccgt ccccgataag gctctgcgcg
      421 acgcgggcgc cgacgtggtg acgcgcagcc tcgccgactg gactgttgac gccgtccacc
      481 atgtcttcga cacgagctgg gggcgttgat gaaaaggccg cccgccgcgt gagcccgcca
      541 tgactcctgc cgacaaactc ttagcggcgg aggcgcgcgg cagcttcgcg cgggaggtgg
      601 cccgccccgg tggcgagatt gatctcgcgc gcgcggcgct cttcgccggg caggaggagg
      661 agccgcgcgc gtgcgacgtg gggcgctgcc tggcgctcct cgaagagatg ggcgcggcgg
      721 cgcgtgaccg caccggcgct tccgccgcgc ccgtcgaggc gctcaacgaa tacctcttcg
      781 gcgagctggg cttcgcgggc aacgagtcgg actattacga cccgcgcaac agcatgctcc
      841 accgcgtgct cgggcgccgg acgggcatac cgataacact gtcgctcgtt tacatggagg
      901 tcggccgccg cgccgggctt gctgtcgagg gcgtagggct ccccggccac ttcatcgtgc
      961 gcgctcgcgc cggggggcaa gagcccgtcc tcgttgaccc tttcaacggc aggattgttg
     1021 accgcgagga atgccagcgc cgcgttgatt tcatctacgg cggcgagatg actctctcgg
     1081 acgagcacct ccggccgctc ggcgcccggc ccatactcgt ccgccttctc aacaacctca
     1141 agtcaatcta cacgcaggcc cagctcttcc gccgcgccct ctccgtagtc gagcggatac
     1201 tgctagtcac cccgaacgac ctcggcgagc ggcgcgaccg cggcctgctg ctcgcgcagg
     1261 tcgggcgcct gcccgaggcg atagacgaaa tccagagcta cctcaacctc gccacgcacg
     1321 cgcccgacgc cgacgaagtc cgcgagcagc taaagaagct gcgcacacgt cactccatgc
     1381 tcaactgaat caggattccg gcttgccttt gcatgtgggg ccgaagaggg cggggatttt
     1441 gccgctgatg atggggtagc tcgcggcctc ggcgtttaag gcgagccact cggcatactg
     1501 gtcggggagg gcggcctcgg ggaagatggc ctcgacgggg cattcgggga cgcaggcgtc
     1561 gcagtctatg caggtctccg ggtttatgta aagccggtcg ggcagctcgt ggaacgcctc
     1621 aacggggcag acggcggcgc agtcagtgta cttgcagtca acgcagtcct ctgtgacgac
     1681 gtaggtcatc gctattgaaa acactcctcg gcgcgtctgt tacgaacttg gagggtgtat
     1741 tgcttcttaa ggcaagcggg cgggcggtgt caaccgcctt cgcttaagag gcgctcgtac
     1801 tcggcccgtg tgcgcgcgta gcactcgcag gcggcggcct ccagcccggc gcggtcgagt
     1861 attttgatgc ggccgcgcgt gtaggtgatg agccccgcgg actgcgcgcg ccccgccgcc
     1921 tcggtgacgc ccgagcgccg gacgccgagc atcacggcga ggaactcgtg cgtcagcgcc
     1981 acctcgtccg agccgatgcc atcgctcgac atcaaaagcc acttacagaa ccttgtgtcg
     2041 agcctgtgca cgcggttgca cgccgccgac tgcgagcccg tgacgatgac ggtgtgcatg
     2101 tatcggttca ggagcttgtg aagcccgccg ccgcggtcgt aagcctccct caagacatcg
     2161 gaacgcactc tcaaggcgtc gcccggcacc tgcgcgaagg tcggcatcgg cgtccgccac
     2221 gcgtcgagga tgacggggat gcctgacatg ccctcgcgcc cgatggtgcc ggactcgacg
     2281 gccgagccgt cctccatcgt agtgacgagc gagagcaggc agccggcggg gaagtagcag
     2341 tcgcgtatag gctcgtccgg gatgatgacg tgctggccgt gcatgagcgt gacccgctcc
     2401 atgtgcggcc gaagagcttc catctcttcg gccggaagcc tttcgaggag cctgttattc
     2461 atagaaatta aaccgggcaa agcggaaagt ggtagcccgg ctagagacac tactcctacg
     2521 aagcgcaact ttcaagaccg ccgcgccgtc agccgcagcc cggatggccg caggtgcact
     2581 ccgaagtcgg gtcggagtct gccgcgtcct cgcagtagtg gctgcaataa cgcttctcgc
     2641 cgccgaccat gcagacgcac ttctggtgcg cgcacttctt ctcgtcagtc ctcacggggt
     2701 ctgccatctc gggagcctcc tctcctttac cggccgcggt ttcggccgga ggtcgaggcc
     2761 gcgcccggct gcttgtccgt gaggttcgag gcgtcgcgcg cctgctgcgg cgcgctcgcg
     2821 ccctgcacca tctcgttctc gctctcgcgg cggcgctggt tcttcttgtc cttgcgctcg
     2881 ccgtccttct tctgccgctt cttctcagac attcgtcgcc tcccgttcgc tcaaaataag
     2941 ttttcagccg gcgcgcgtct cgccgcccaa gagagtgatt atctcgcccg tgacgtagct
     3001 cgagtccgcc tcggaggcga agaagacgaa ggccggcgcg atctcctcgg gctgcgccgg
     3061 gcgcttcata ggcgtgtcgg cgccgaactc ggccacgtcc ttcgccgact tgtccgaagg
     3121 gttcagagga gtccagaccg ggccgggcgc gacgcagttg acgcgcacgc gccgctcgac
     3181 gaggttctgc gccagggact tggtgaaggc gtgaatcgcg cccttcgtcg ccgagtagtc
     3241 gagcaactcc ttgctgcctt gcagccctgt gatcgagccg cagttgacga tggccgcgcc
     3301 ctcgcgcagg tgccggagcg ccgccttcgt catgtagaag tagccgtaga tgttcgtgcg
     3361 gaaggtcgtg tcccactgtt cgagcgacac gtcttcgagc cgcttctggt gctgctggaa
     3421 ggccgcgttg ttgacgagga tgtcgagttt gccgaactcc ccgaccgtct gttcgacggc
     3481 ctcctgacag aaactcgact cgcgcacgtc gccggggatg agcagcgcgc gccgcccctc
     3541 cgcctcgacg gccgcgcgcg tctcctcggc gtccacctgc tcctcgggca ggtagactag
     3601 cgcgacgtct gccccctcgc gcgcgaagag cacggccacg gcgcggccga tgccggagtc
     3661 gcccccggtc acgagcgcaa ccctgtcctt gagcttgccc gagcaaactt tcggggacac
     3721 gtccgtgcgt gggaact
//
LOCUS       DASPKR010000502         3251 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1498854, whole genome shotgun sequence.
ACCESSION   DASPKR010000502 DASPKR010000000
VERSION     DASPKR010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3251)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3251
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1498854"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..2743
                     /locus_tag="VD968_13465"
     CDS             101..2743
                     /locus_tag="VD968_13465"
                     /inference="COORDINATES: protein motif:HMM:NF026220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HYE15445.1"
                     /translation="MPTKFPFRAVETISPTEAWAVSDGGELVHTTDGGATWDVREINT
                     SAVHFKDALHGWAIGSSGSFYTTDGGKTWNAGAGVSTTVSSIAFADLSTGFAARNTDT
                     LHKTTDGGRTWSLVPVPTYVNRVQFFDSRNGVATGPYGVVRTTDGGRTWAMWANTHGG
                     FFVNLNEGWYLTGNIAERTTDGGRTWQQTTLPPVVSVLTYTFVDSQHGWAAGVSTMDG
                     AVNIIRTTDGGATWTTQAGGPLNTTGPFWAIDFADAMHGTAVGNSALFTTTDGGVTWV
                     RRMSGSPNEVLGFSSTDGRHAWASQINAEVAYTTDGGNFWHRVSLPIDGGNQNHAEDV
                     DFSDNMNGWVVGGVSSLVYHSTDGGRSYQRRSTGFTASLFGVEAIDARNVVVVGYASG
                     WHGPIVLRTTDGGATWAEMPNPFRSYTRWSFYAVHFVNATTGWAVGSNGIVIKTTDGG
                     ATWVDKSVPGLTVPLSDVSFADANNGWVVGYYGALFRTRDGGQTWEQQDAGTTYAILS
                     VSAVSPTTAWIGCYGTPGFAARTLDGGATWAREHPEADPTANNGVGSFSAVHFLNAER
                     GWAAGYSGIYRRGGAEPAVPEPSLSLALNPTSVTGTKPSTATVTLTEPAPSTGAKVLL
                     SSSDTSAATVPAYVTVAAGTTTKTFTVTTKAVSAPTNVNISATYEGETKTATLGVAPP
                     VLTSLTLNLSSITGPCQTTKAGVNLSAKAPPGGVVINLTNGNPAAVVPASVTVPAGYT
                     SATFTITAAQVSAKTSGAITAKPADANFGVTGYGKTLTVLPIGVQTLVFSPNPVGEQG
                     VTTGTLTLVCPVPAGSAPVIVKLASSATGVAAPTVSSVSVPAGSDRATFSVVTKDVSV
                     TSYATISAKANGLGKNVKLTVNPR"
     gene            complement(2888..>3251)
                     /locus_tag="VD968_13470"
     CDS             complement(2888..>3251)
                     /locus_tag="VD968_13470"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYE15446.1"
                     /translation="EDSTIVTMNCAILNRLLANKPDVARRILEAFGRRVLEAERQLED
                     IAFRSIPSRVAALILREADGDEVRGLSHQDIAERLGVYRETATNALNDLKAESMISIG
                     RKHITILDRGRLEMVAGE"
BASE COUNT          531 a         1117 c         1085 g          518 t
ORIGIN      
        1 tcgcctcgcc gtcgtcgctc tgtgcgccgc catgtcgctg tttctttctg cgtccgccgc
       61 cgttgcccag gacgcctcgc cctggcacaa gcaagcaccc ttgccaacca agttcccttt
      121 cagggcggtc gagacgatct ccccgaccga ggcgtgggcc gtcagcgacg ggggcgagct
      181 cgttcacacg accgacggcg gcgcgacttg ggacgtgcgg gagatcaaca cttccgctgt
      241 gcatttcaaa gacgcgctgc acggctgggc catcggcagc tcgggctcgt tctatacgac
      301 tgacggaggc aagacctgga acgcgggcgc gggggtgagc accacggtca gcagcatcgc
      361 cttcgccgac ctctcgaccg gcttcgccgc acgtaacacc gataccctcc acaagaccac
      421 cgacgggggg cgcacctggt ctctcgtccc cgtgccgacc tacgtcaacc gcgtgcagtt
      481 cttcgactcg cgcaacggcg tcgccaccgg cccctacggc gtggtgcgca ccaccgacgg
      541 cgggcggacg tgggcgatgt gggcgaacac tcacggcggc ttcttcgtca acctcaacga
      601 gggctggtat ctcacaggca acatcgccga gcgcacgacc gacggcgggc gcacgtggca
      661 gcagacgacc ttgccgcctg tggtgtcggt attgacctac acgttcgttg actcacagca
      721 cgggtgggcg gcgggcgtct cgacgatgga cggcgccgtc aacatcatcc ggacgaccga
      781 cggcggcgcg acctggacga cgcaggcggg cggcccgctc aacaccacgg ggcctttttg
      841 ggccatagat ttcgccgacg ctatgcacgg cacggcggtc ggcaactcgg ccctcttcac
      901 caccaccgac ggaggcgtca cctgggtgag acgcatgagc ggctcgccga acgaggtgct
      961 gggcttctcc tccaccgacg ggcggcacgc ctgggcctcg cagattaacg ccgaagtcgc
     1021 ttacaccacc gacggcggca acttctggca ccgcgtcagt ctccccatag acggcggcaa
     1081 ccagaatcac gccgaggacg tggacttctc cgacaacatg aacgggtggg tcgtcggcgg
     1141 cgtgagcagc ctcgtctatc actcgaccga cgggggccgc agctaccagc gacggagcac
     1201 gggcttcacg gcctccctct tcggcgtcga ggccatagac gcgcggaacg tcgttgtcgt
     1261 cggctacgcc tcggggtggc acggccccat cgtgctgcgc acgacagacg gcggcgcgac
     1321 gtgggccgag atgccgaacc cgttccgcag ctacacgcgc tggtctttct acgccgttca
     1381 cttcgtcaac gcgacgacgg gctgggcggt cggctcaaac ggcatagtca tcaagaccac
     1441 ggacggcggc gcgacgtggg tcgataagag cgtcccgggg ttgaccgtgc cgctcagcga
     1501 cgtttcgttc gccgacgcta acaacgggtg ggtcgtcggc tactacgggg cgctcttccg
     1561 cacccgggac ggcgggcaga cgtgggagca gcaggacgcc ggcacgacgt acgccatcct
     1621 gtcggtgagc gccgtcagcc cgacgaccgc ctggatcggg tgctacggca ccccgggctt
     1681 cgccgcgcgc acgctcgacg gcggggccac ctgggcgcgc gagcacccgg aagcggaccc
     1741 gacagcgaac aacggcgtcg gctcgttctc cgccgtccac ttccttaacg ccgagcgcgg
     1801 ttgggcggcg ggttatagcg gcatctaccg ccgaggcggc gccgagcccg ccgtgcccga
     1861 gccctccttg tcgctcgcgc tcaacccgac ttcggtgacg ggcacgaagc cgtcaacggc
     1921 caccgtgacg ctgaccgagc ccgcgccttc gacgggcgcg aaggtcttgc tctcaagcag
     1981 cgacacgtcg gccgcgaccg tcccggctta cgtcacggtg gcggcgggca cgacgaccaa
     2041 gaccttcacg gtgacgacga aagcagtctc cgcgccgacg aacgtgaaca tctcggccac
     2101 gtatgagggg gagacgaaga cggccacgct gggcgtcgcc ccgccggttc tgacaagcct
     2161 gacgctcaac ctctcgagca tcaccggccc gtgccagacg actaaggcgg gagtcaactt
     2221 gagcgccaag gcgccgccgg gcggggttgt catcaatctc acgaacggca atcccgcggc
     2281 cgtcgtgccg gcgagcgtca ccgtgccggc gggctatacg tccgccacgt tcacgatcac
     2341 ggccgcgcag gtgagcgcga agacctcagg cgcgataacg gccaagcccg ccgacgcgaa
     2401 cttcggggtg accggctacg gcaagacgtt gacggttctt cccatcgggg tgcagacgct
     2461 cgtgttctca cccaaccctg tcggcgagca gggcgttacg accggcacgt tgacgctggt
     2521 ctgccccgtc cccgcgggga gcgcgcccgt gattgtcaag ctggcgagca gcgccacggg
     2581 cgtggccgcg ccgacggtgt caagcgtcag cgtccccgcg ggctctgacc gcgcgacgtt
     2641 cagcgtggtg acgaaggacg tgtcggtcac gagctacgcc acgattagtg ccaaggccaa
     2701 cgggctcggc aagaacgtta agctgaccgt caacccgcgg tagcggaagc gttagttgag
     2761 aagaccggcc gcgcgagcga acgtgtccgc gcggccggtc ttcttcgcgt ctcgcggtgc
     2821 cgcttgcgcc ttgggctacc gtcttccgcc tcctccggca tctggcccgc cagccccacg
     2881 aggcgaatta ttccccggcc accatctcca gacggccccg gtctagtatg gttatgtgct
     2941 tgcggccgat gcttatcatg gattcggctt tgaggtcgtt tagggcgttg gtagcagtct
     3001 cgcgatagac gccgaggcgc tcggctatgt cctggtggga gaggccgcgg acttcgtctc
     3061 cgtcggcctc tctgagtatc agggccgcga cgcgcgaggg gatgctgcga aaggctatgt
     3121 cttcgagctg gcgctcggcc tctagcacgc ggcggccgaa ggcttcgagt atgcggcgcg
     3181 cgacatcggg cttgttggcg agcaggcggt tgaggatggc gcagttcatc gtcactatgg
     3241 tcgagtcctc c
//
LOCUS       DASPKR010000503         2327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_592714, whole genome shotgun sequence.
ACCESSION   DASPKR010000503 DASPKR010000000
VERSION     DASPKR010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_592714"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..556)
                     /locus_tag="VD968_13475"
     CDS             complement(<1..556)
                     /locus_tag="VD968_13475"
                     /inference="COORDINATES: protein motif:HMM:NF013213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HYE15447.1"
                     /translation="MPPSAMFVDSHAHIDGEEFDADRDAVVERARAAGVRAILNVGTG
                     DPHSGSLERAVEVAERYEGVYAAVGVHPHDARLWDEAAEQRLLNLVRAGGRVVAWGEI
                     GLDYYYDNSPREVQREVFARQLALASDAGLPVVIHSREADEDTVEILRDVWAGSGLGG
                     VLHCFGGGPAMAQAALEIGFYVSFA"
     gene            complement(565..>2327)
                     /gene="metG"
                     /locus_tag="VD968_13480"
     CDS             complement(565..>2327)
                     /gene="metG"
                     /locus_tag="VD968_13480"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF020892.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methionine--tRNA ligase subunit beta"
                     /protein_id="HYE15448.1"
                     /translation="LKSEDELSPAPEGGGNPSCLIHERPVDHVSEESYFFRLSDYADA
                     LLEFYERRPDFIRPEARRNEVVSLVRGGLQDVSISRLKSSVSWAIPVPDDPDHTIYIW
                     FDALLNYITALGWGSESRRAEFGTDLFEKFWPGLHMLGKDILRQHAVLWPAMLFAADV
                     EPPQGVFAHGLWLDQTGRKGSKTLGNALELPVLLRHYQVDAVRYFLLREMSFGQDSKV
                     DYEVILDRSNSDLASGLGNLVSRTLTMIQRYFGGNVPADEIPEARRLAAKRAGVGSDA
                     SELASSLELVRDQFVQQVEGYAFHRALETVWGMIARVDKFISDAKPWELARSEEQRDT
                     LGAVLYRAAETIRWLAVLLYPVMPDSARAVWRQLGQEGGPERLDPTQLRWGGLRAGAQ
                     LGEVAPLFPRIDKAKIMAEIEKEVSRKTEDAPGAHATQAAVPGAPTATEAQPEPLGRG
                     ATEAAAEPGAPEHSGGAAAAPPEGVASYITIDDFAKVEMRVGEVLTAERVPKSDKLLR
                     FTVDLGEAEPRQILAGIAEHYEPEKLIGRKVAVVSNLKPRKLRGFESQGMVLAASVGD
                     EGRPVLATFTEDVPNGARLK"
BASE COUNT          361 a          775 c          795 g          396 t
ORIGIN      
        1 cggcgaagga gacgtagaag ccgatttcga gcgcggcctg cgccatcgcg gggccgccgc
       61 cgaagcagtg cagcacgccg ccgaggccgg agccggccca cacgtcgcgc agaatctcga
      121 cggtatcctc gtcggcttcg cgggagtgta tgacgacggg caggccagcg tcgctggcga
      181 gcgcgagttg acgcgcgaag acctcgcgct gcacttcgcg cggcgagttg tcgtaatagt
      241 aatcgagccc gatctcgccc caggcgacga ctcgcccgcc ggcgcgaacc agattcagaa
      301 gtctctgctc ggcggcctcg tcccagagcc tcgcgtcgtg cgggtgcacg ccgaccgccg
      361 cgtaaacgcc ctcatacctt tcagccacct cgaccgcgcg ctccaggctt ccagaatgcg
      421 ggtcgcccgt ccccacgttc aaaatcgcgc gaacgcccgc cgccctcgcg cgctccacga
      481 ccgcgtcgcg gtcggcgtca aactcctccc cgtcaatgtg cgcgtgcgag tcaacgaaca
      541 tggccgacgg aggcacggcg gcttctattt cagccttgcg ccgttcggta cgtcttcggt
      601 gaaggtggcg agtacggggc ggccctcgtc gccgacggag gcggcgagca ccatgccctg
      661 cgactcgaag ccgcggagct tacgcggctt gaggttcgag acgaccgcta ccttgcggcc
      721 gattagcttc tctggctcgt agtgctctgc gatgcccgcg agtatctgtc gcggctccgc
      781 ttcgcccagg tcaacggtga agcgcaagag cttgtcagac ttcggcacgc gctcggccgt
      841 gagcacttcg cccacgcgca tctcgacttt ggcgaagtcg tcaatcgtta tgtagctggc
      901 gacgccttcg ggcggagcgg cggcagctcc gccggagtgc tctggcgcgc ccggctcggc
      961 cgcggcctca gtcgcgccgc gcccgagcgg ctcgggctgg gcttcggtcg cggtcggggc
     1021 gccggggact gccgcctgcg tggcgtgcgc gcccggcgcg tcttcggtct tgcgtgagac
     1081 ttccttctct atctctgcca tgattttcgc cttgtcaatc ctcgggaaaa ggggcgcgac
     1141 ttcgcccaac tgcgcccccg cgcgaagtcc gccccagcgt agctgtgtgg ggtctagcct
     1201 ctcggggccg ccctcctgcc cgagctgccg ccagacggcg cgcgccgaat cgggcatcac
     1261 tgggtaaagc agcacggcga gccagcgtat ggtctcggcg gcgcggtaga gcacggcgcc
     1321 gagcgtgtcg cgctgctctt cgctccgggc aagctcccac ggcttcgcgt ccgagatgaa
     1381 cttgtcaacg cgcgcaatca ttccccagac ggtttcgagc gcgcggtgga aggcgtaccc
     1441 ctcgacctgc tgcacgaact ggtcgcgcac gagctcgagg ctgctggcaa gctcggaagc
     1501 gtcggagccc acgccggctc gtttggcggc gagccttcgc gcctcgggga tttcgtccgc
     1561 aggcacgttg ccgccgaagt agcgctgaat catcgtgagc gtgcggctca cgaggttgcc
     1621 gaggccgctc gcgaggtcgc tgttcgagcg atccagaatc acctcgtagt caaccttgct
     1681 gtcctgcccg aaagacatct cgcgcaggag gaagtagcgg acggcgtcaa cctggtagtg
     1741 gcgaagtaga acgggaagct ccaacgcgtt cccaagcgtc ttcgagcctt tgcgacccgt
     1801 ctggtcgagc cagagcccgt gcgcgaagac gccctgcggc ggctcgacgt cggcggcgaa
     1861 gagcatggcg ggccagagca cggcgtgctg ccgcagtatg tctttgccga gcatgtgcag
     1921 gcccggccag aacttctcga agaggtcggt gccgaactcg gcgcgacgcg actcgctccc
     1981 ccagccgagc gcggtgatgt agttcagaag cgcgtcgaac cagatgtaga tggtgtggtc
     2041 ggggtcgtcc gggacgggga tggcccacga gacggaggac ttcagccggc tgatggacac
     2101 gtcctgaagg ccgccgcgca cgaggcttac gacttcgttg cggcgcgcct cggggcgtat
     2161 gaagtcgggc ctgcgctcgt agaattcgag gagcgcgtcg gcgtagtctg acaggcggaa
     2221 gaagtagctc tcctccgaga cgtgatcaac tgggcgctcg tgtatgaggc acgatgggtt
     2281 gccgccgcct tcgggcgcgg gcgaaagctc gtcctcggac ttgagat
//
LOCUS       DASPKR010000504         2495 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_205411, whole genome shotgun sequence.
ACCESSION   DASPKR010000504 DASPKR010000000
VERSION     DASPKR010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205411"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            221..583
                     /locus_tag="VD968_13485"
     CDS             221..583
                     /locus_tag="VD968_13485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15449.1"
                     /translation="MNRRVLAAVGDLFFASKIRGTAEALNVSVDFARTADSLFDAAKT
                     DVPSLIILDLQSTSADAVALAARLKADEQLARVPLVGFFSHVETELQRRAEDAGVDYV
                     LPRSLFTRRLPEILRGEL"
     gene            complement(660..1679)
                     /gene="aroF"
                     /locus_tag="VD968_13490"
     CDS             complement(660..1679)
                     /gene="aroF"
                     /locus_tag="VD968_13490"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: protein motif:HMM:NF006421.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HYE15450.1"
                     /translation="MLIVMKTDATDRDIAAVERVITEMGFRPHVMPGASRTAIGITGN
                     EGPVDVTPFESLPGVAEAIRVTKPYKLISLDLRPEKTVVSVGDAEIGGDELAIIAGPC
                     AVESREQAFAVAEVVRRSGARFFRGGAFKPRTSPYAFQGMGEEGLRILAEVREATGLK
                     IVTEAMDERGVDLVERYADVLQIGARNMQNFSLLRRAGRSHLPVLLKRGLSAMLDEWL
                     LAAEYVMAEGNYNVVLCERGVRTFAQHTRNTLDLAAIPAVRRISHLPVIVDPSHGTGK
                     NYMVTPLARAGIAVGADGLIVEVHDHPERARSDGAQALTPEQFERMVAEVRAIHEVIA
                     PAPVG"
     gene            complement(1779..>2495)
                     /locus_tag="VD968_13495"
     CDS             complement(1779..>2495)
                     /locus_tag="VD968_13495"
                     /inference="COORDINATES: protein motif:HMM:NF017555.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DALR anticodon-binding domain-containing
                     protein"
                     /protein_id="HYE15451.1"
                     /translation="AEELGLELTAEERARPFVEMSGRRGLGVKADDLIDRLEENERRE
                     VEERHPGLAEERKREVAHTLAVSALRYFLLKWTRNSVIVFDFKEAQSTTGESGPYCLY
                     AAVRANSIFRKLRTGELKEAKRLLAPGGGLPAETAARVSEIFEGSTGGELWALTTLAG
                     RLGDALAQAASAAEPSHLAKFAFRLAQGFNAVYNRDENRIIEEKDPLRRAVLIVVFDY
                     VRRQLTSALETLGIEVPERM"
BASE COUNT          418 a          814 c          820 g          443 t
ORIGIN      
        1 cgacggcgta gcggatgtta taagttgcta ctacgaggct ggcggggggg agcggcgcgc
       61 cgggcggcgc gaagtcgccg cgctcaaggc ccgcctctgt cggggcgagg gagtcgtctc
      121 ggaggggctc tgccgtcgtg ctcatccgta ggctttacga ggcgcgctca agcggggcaa
      181 aatctgaagc cgaactcgtc acagcgaaag gggattataa atgaatcgtc gcgtgctcgc
      241 cgcggtcggc gaccttttct tcgcctcgaa gattcgcggc acagccgagg cgttgaatgt
      301 ctcggttgac ttcgcccgca cggccgactc cctattcgac gcggcgaaga ccgacgtccc
      361 ctcgctcatc atactcgacc tgcaatcaac ctcggccgat gcggtcgcac tcgccgcgag
      421 gctcaaggcc gacgaacagc tcgcgcgtgt ccccttggtc ggcttcttct cccacgtcga
      481 gactgagctt cagcggcgag ccgaagacgc gggggttgat tacgtcctgc cgcgctcgct
      541 cttcacaaga cggctccccg aaatcctgcg cggcgaattg tagaaagaga ctgaacaagc
      601 taggagggcg ggcgactcac acggccgctc gccctcctct ttttaacttc agtgttattt
      661 tagccgacgg gtgccggcgc gatgacttcg tggatggcgc gcacttccgc gaccatccgc
      721 tcgaactgct cgggcgtgag cgcctgcgct ccgtccgagc gcgcccgctc ggggtggtcg
      781 tggacttcga cgatgaggcc gtcggcgccg actgcgatgc ccgcgcgcgc cagaggcgtg
      841 accatgtagt tcttgccggt gccgtgcgag gggtcaacga tgacgggcag gtgagagatg
      901 cgccgcacgg cagggatggc cgcgaggtcg agggtgttcc gcgtgtgctg cgcgaaggtg
      961 cgcacgccgc gctcgcagag cacgacgttg tagttgcctt cggccatcac gtactcggcg
     1021 gcgagcagcc actcgtcgag catcgccgac aacccgcgct tcaggagcac gggcaggtga
     1081 gagcggcccg cgcgccgcag cagtgagaag ttctgcatgt tgcgcgcgcc tatctgcaaa
     1141 acgtcggcgt agcgctctac gaggtcaacg ccgcgctcgt ccatcgcctc cgtaacgatt
     1201 ttgaggccgg tcgcctcgcg aacctcggcc agaatgcgta ggccctcttc acccatgccc
     1261 tgaaaagcgt aaggcgaggt gcggggcttg aaggcgccgc cgcggaagaa gcgcgcgccg
     1321 ctgcgtcgca cgacttcggc gacggcgaaa gcctgctcgc ggctctcgac ggcgcagggg
     1381 ccggcgatga tggctagctc gtcgccgcct atctcggcgt cgcccacgct aacgaccgtc
     1441 ttctcgggcc gcaggtcgag cgagatgagc ttgtagggct tcgtgacgcg tatggcctcg
     1501 gcgacgcccg gcaggctctc gaagggcgtc acgtcaaccg gcccctcgtt gcccgtgatg
     1561 cctatggccg tgcgcgatgc gccgggcatg acgtgcgggc ggaagcccat ctccgttatg
     1621 acgcgctcga cggccgcgat gtcgcggtcg gtggcgtcgg tcttcatcac aatcagcatg
     1681 ggaaacctct attcaaaatc gagtgcggca gtgtctcttt aaaaccgccc gcaggaaaat
     1741 ttagcaactg acgtgccggc gcgggccagc cccaccgcct acatcctttc ggggacttcg
     1801 atgccgaggg tttcgagggc cgaggtcaac tgccgccgca cgtagtcgaa aacgacgatg
     1861 aggacggcgc gccttaaggg gtctttctct tcgatgatgc ggttctcgtc gcgattatag
     1921 acggcgttaa acccctgcgc caaacggaag gcgaatttgg caagatgcga aggctctgcg
     1981 gccgaggcgg cctgcgcgag cgcgtcgcct agccggccag ccagagtcgt cagcgcccaa
     2041 agctctccgc ccgtcgagcc ctcgaaaatt tccgagacgc gcgcggccgt ctccgccggc
     2101 aagccgcccc cgggcgcaag caggcgcttc gcctctttca actcgccggt tcgcaacttg
     2161 cgaaagattg agttggcgcg aacggccgcg tagaggcagt aaggcccgga ctcgccggtg
     2221 gttgactgcg cctccttgaa gtcgaagacg atgacggaat ttcgcgtcca cttcagaagg
     2281 aagtagcgca gggcgcttac ggcgagcgtg tgcgcgacct cgcgcttgcg ctcttcggcc
     2341 aagccggggt gacgctcttc gacctccctg cgctcgttct cttcgagccg gtcaatcagg
     2401 tcgtcggcct tgacgcccag gccgcgccgc ccgctcatct ctacgaaggg ccgagccctc
     2461 tcctcggccg taagctcaag gcccaactcc tcggc
//
LOCUS       DASPKR010000505         7812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1499336, whole genome shotgun sequence.
ACCESSION   DASPKR010000505 DASPKR010000000
VERSION     DASPKR010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7812)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7812
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1499336"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(39..1271)
                     /locus_tag="VD968_13500"
     CDS             complement(39..1271)
                     /locus_tag="VD968_13500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15452.1"
                     /translation="MRSSAKALALAPLALALLAAPAAARRRQQQNPLAQPVVYKMAGT
                     DKVEVRRDVTYKTEGDTTLKLDLYLPPGTADGARLPVVVFINGVGDPPANSGTPRVKE
                     WGQYTSWPRLAAASGMAAVTYESRGTEADADADDLLDYLRKNAAALKIDENRLSIWAC
                     SANVRAGLSAAMQPGRSYVKSAVFYYGFMGLPAVRADVPIFIARAGYDNLQLNNTLDA
                     YVRRALEAEAQVTLVNYADGQHAFDVRDDTERSREIIRQTLDFIKFHFTPGGEVKAAA
                     PGRAPSPARFYAIISNEGVQKALQAYADARRSDPSAFILQEGFINALGYQLMQERKVK
                     EAVEILKLNVSSYPDSANTYDSLADAYEADGQKELAIQFSEKALEMLAKSGLNEQQAA
                     PIRNSAQQKLQRLKPAAK"
     gene            complement(1284..1964)
                     /locus_tag="VD968_13505"
     CDS             complement(1284..1964)
                     /locus_tag="VD968_13505"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYE15453.1"
                     /translation="MRKVLIVEDDQAMAVALRDGFTYEGYSVQVARDGAAGLRLAGEK
                     GLDLVILDVMLPRMSGLDVCRQLRGAGNNTPIIMLTARGQEIDKVLGLKTGADDYVTK
                     PFSFLELMARVEAVLRRAAKPAEQVESVQFGDVEVNFRTFEATKGGRPLELSPREYKM
                     LKYFVEHRGEVVSRDQLLDHVWGYDGLPLTRTVDMHIAKLRQKIEDTPGDPKHIITVH
                     RVGYKFTG"
     gene            complement(1977..2420)
                     /locus_tag="VD968_13510"
     CDS             complement(1977..2420)
                     /locus_tag="VD968_13510"
                     /inference="COORDINATES: protein motif:HMM:NF024297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYE15454.1"
                     /translation="MKKLTILAAAALALCAALWLPASAGSAEEAGVRQALEHYLRGHA
                     TGLGEHHRKAFHPEAKLFFTRDGKLAQRTSEEYIAGSPGKPAADEARRKRSIESIDIT
                     GDAAIAKIVLDYPDVKFTDYMSLLKIDGEWKIVNKTFHRETKKKE"
     gene            complement(2443..4143)
                     /locus_tag="VD968_13515"
     CDS             complement(2443..4143)
                     /locus_tag="VD968_13515"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HYE15455.1"
                     /translation="MAKLNEILKRHVLLVGLAAVVVPLLSILGLQYWSLSELEKTSIV
                     AGQVGMKNYLNDAQKEVKNFYKAKADEILTVPAYAISGEDLKRAKYHFSQCQVEGVKR
                     LFIAAFDPEGEAEVLFFDPSGRKGTSEDVPTPELHAVRRAVAPMRVLSKEGTTVQSPM
                     AYFEERDIENRVIYKPILDDSQKVVGAAGMILDRAFFVERLVPRVVGETLPKFFPDGR
                     DRNVIVSLYEGRDKLLYTSQEVEGQDDYTGQSMPYFWEYNLVIRSRHTTPKQWAHWNF
                     NVSLGLSLLMTAVLIGGIILALRTASREMRLSQMKADFVSNVSHELRTPLASIRVFGE
                     FMKLGRVRDSEKIREYGEHIETESRRLTQLINNILDFSKIESGRKTYQFERANVEGLV
                     SETLKTCEVRLKQKGFSVVFHGSPRPLSLAVIDRDAIAQALMNLLDNAVKYSEHAEKK
                     EVTVRVGQKENLIHISVTDHGVGIAPEEQKKIFEKFYRVSTGLVHDVKGSGLGLALVK
                     HIVEAHRGSVTVESAPGRGSTFTITLPAADSVADHAETQRPAPPLLGSDPPLGFGLKN
                     "
     gene            4362..4622
                     /locus_tag="VD968_13520"
     CDS             4362..4622
                     /locus_tag="VD968_13520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15456.1"
                     /translation="MSAKLCIRFAAAAALVLASTAFAHRSLASVSPCAAGAAAATRPE
                     ARASGPVLRGRGLLKFGGYELNVTFTPGGKLVNFDITAARGR"
     gene            complement(4678..5640)
                     /locus_tag="VD968_13525"
     CDS             complement(4678..5640)
                     /locus_tag="VD968_13525"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH:quinone reductase"
                     /protein_id="HYE15457.1"
                     /translation="MKAIRAHEFGGPEVLRLEEVEAPRPGPGQVLVRVRAVGVNPVDT
                     YIRSGVHAVKPALPFTPGLDAAGVVESVGEGVERFREGENVYTAGSLSGTYAELALCE
                     EGQVHPLPGNVTFAQGAGVNTPYVTAYRALFQRARGVPGETVLVHGASGGVGTAAVQI
                     ARAAGFTVIGTGGTEEGRRLVSEQGAHHVLDHRSEGYMEELSSLTGGRGVDVILEMLA
                     NVNLGRDFAALAQGGRVVVVGSRGSVEINPRLLMTRDASVHGMSLFNASTKELASIHA
                     ALHAGLESGAYRPVVGRELPLAEAARAHEEVLKPGAYGKIVLIP"
     gene            complement(5657..6532)
                     /locus_tag="VD968_13530"
     CDS             complement(5657..6532)
                     /locus_tag="VD968_13530"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE15458.1"
                     /translation="MILITGGTGTTGRDIVKELAALGAKRVRALVRDESKAAFIREAG
                     FETVEGDFDRPETLGRALEGVGRALLLTPPSPQTVEHQSRFIEAAKRAGVRHVVKFSA
                     YGADAHARGGFAKWHGEAEDMLKASGMAYTMLQPNFFMQNLLGQARSIAEGGRIYQPV
                     GDARASFVDTRDVAAVAARALAEEGHEGKSYVITGPEALSYHDVAAKLSEAAGREITY
                     VPVSPDDFRNGALAQGLPEWLVGALGLLNETFASGRAAAVTDAVREVTGREPGSFDQF
                     ARDHAEAFRGRQPVS"
     gene            complement(6645..7115)
                     /locus_tag="VD968_13535"
     CDS             complement(6645..7115)
                     /locus_tag="VD968_13535"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HYE15459.1"
                     /translation="MASKLQKELKQAKPFAGIEEEVFLNLLRTADALSRPLAEMLKRA
                     GLTPTQYNVLRILRGAGECGAACREISDRLITKDPDITRLLDRMEDRGLVTREREERD
                     RRRIATRITDEGLRLLAEWDGRVEELLREQLGHMDEKKLARLNELLEAARGDGA"
     gene            complement(7174..>7812)
                     /locus_tag="VD968_13540"
     CDS             complement(7174..>7812)
                     /locus_tag="VD968_13540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15460.1"
                     /translation="GVASAGFDARRRKANNVFYFLDSNASAARWVSADPAPDEWTSQF
                     ASSGVKGESLSAVFPWVRPQGWHADAPATALPVPTAEVLSDTSEGATRTIRLKVSSRR
                     GAPMLLAYAEDGAALRRAFLNGKPLLDNSSAAADGRRSPLRLSYAAPPAEGFELLLEV
                     DPSAPLRLTVQDISFGLPQLPGQQLTPRPAHMMPAPAFRSSDTTVVGRDFNF"
BASE COUNT         1154 a         2596 c         2617 g         1445 t
ORIGIN      
        1 gagcctccct ccctctttcg tcagtgtctc gcctccttct acttcgcggc cggcttgagg
       61 cgctgcaact tctgctgggc gctgttgcgt atgggggccg cctgctgctc gtttaggccc
      121 gacttggcga gcatctccag cgccttctcg gagaactgta tcgccagttc cttctggccg
      181 tcggcctcgt atgcgtcggc gaggctgtcg taggtgttgg cggagtcggg gtaggaggag
      241 acgttgagct tgagaatctc gaccgcctcc ttcaccttgc gctcctgcat gagctggtat
      301 ccgagcgcgt tgatgaagcc ctcctgtagg atgaaggccg aggggtcgct gcgcctggcg
      361 tcggcgtaag cctgaagcgc cttctgcacg ccctcgttcg agattatggc gtaaaagcgc
      421 gcgggcgagg gcgcgcggcc cggcgccgcg gccttgacct cgccgcccgg cgtgaaatgg
      481 aacttgatga agtcgagggt ctgtctgatt atctcgcgcg agcgctcggt gtcgtcgcgc
      541 acgtcgaagg cgtgctggcc gtcggcgtag ttgacgagcg tgacctgcgc ctcggcctct
      601 agcgcgcgac gcacgtaggc gtcgagcgtg ttgttgagct gaaggttgtc gtagcccgcg
      661 cgcgcgatga agatcggcac gtccgcgcgc acggccggaa ggcccatgaa gccgtaatag
      721 aagacggcgc tcttgacgta actcctgccg ggctgcatcg cggccgagag ccccgcgcgc
      781 acgttggccg agcaggccca gatgctcagg cggttctcgt caatcttgag cgcggcggcg
      841 ttcttgcgca ggtagtcgag caggtcatcg gcgtcggcgt cggcctcagt cccgcggctc
      901 tcgtaggtga cggccgccat ccccgaggcg gcggcgagcc gcggccagga agtgtactgc
      961 ccccactcct tcacgcgcgg cgtgcccgag ttcgcgggcg ggtcgccgac gccgttgatg
     1021 aagacgacga cgggcaggcg tgcgccgtcc gccgtgccgg gcgggaggta gaggtctagc
     1081 tttagagtgg tgtcgccctc ggtcttgtac gtcacgtcgc gtcggacttc gaccttgtcg
     1141 gtgccggcca tcttatagac gaccggctgc gccagggggt tctgctgctg acggcggcgc
     1201 gcggccgcgg gggcggcgag cagtgcgagg gcgagggggg cgagggcgag tgcctttgcg
     1261 ctgcttctca tgttgttcct ccttcagccg gtgaacttgt agccgacgcg gtggacggtg
     1321 atgatgtgct tggggtcgcc gggcgtgtct tctatcttct gccggagctt ggcgatgtgc
     1381 atgtcaaccg tgcgcgtgag cggcagcccg tcgtagcccc agacgtggtc caggagctgg
     1441 tcgcgcgaga cgacctcgcc gcggtgctcg acgaagtatt tgagcatctt gtactcgcgc
     1501 gggctaagct ccagcgggcg gccgcccttc gtcgcctcga acgtgcggaa gttgacctca
     1561 acgtcgccga actgcacgct ctcgacctgc tcggcaggct tggccgcgcg gcgcagcacg
     1621 gcctcgacac gcgccatcag ctcaaggaag ctgaagggct tggtgacgta gtcgtcggcg
     1681 ccggtcttga ggcccagaac cttgtctatc tcctgcccgc gcgccgtcag catgattatc
     1741 ggcgtgttgt tgccggcgcc gcgcagctgc cggcatacgt cgaggccgct catgcgcggg
     1801 agcatcacgt cgagtatgac gaggtctaag cccttctcgc ccgccaggcg caagcccgcc
     1861 gcgccgtcgc gcgcgacctg caccgaatat ccctcgtagg tgaagccgtc ccgcagggcg
     1921 acggccatcg cctggtcgtc ttcgacaatt aagactttgc gcataagaac agccaactac
     1981 tccttcttct tcgtctcccg gtggaacgtc ttgttgacta tcttccactc gccgtcaatc
     2041 ttgagcagcg acatgtagtc ggtgaacttc acgtcggggt agtcgagcac tatcttggcg
     2101 atggcggcgt cgcccgtgat gtctatgctc tcgatgctgc gcttgcgccg ggcctcgtcg
     2161 gcggccggct tgcccggcga gccggctatg tactcctcgc tcgtgcgctg cgccagcttg
     2221 ccgtcgcgcg tgaagaagag cttggcctcc gggtggaatg ccttcctgtg gtgctcgccc
     2281 aggccggtcg cgtggccgcg caggtaatgt tctagcgcct ggcgcacgcc ggcctcctcc
     2341 gcgctccccg cgctcgccgg caaccaaagg gccgcgcaca gcgcgagcgc ggcggccgca
     2401 agtatcgtca gctttttcat ccccaactcc taaatatagt tttcagttct tgagcccgaa
     2461 gccgagcggc gggtcgctgc ccaaaagcgg cggcgccggg cgctgcgtct cggcgtggtc
     2521 ggccacggag tcggccgccg gaagcgtgat ggtgaaagtg ctgccgcgcc ccggcgcgct
     2581 ctcgaccgtg acggagccgc ggtgcgcctc gactatgtgc ttgacgagcg cgaggcccag
     2641 cccgctcccc ttcacgtcgt gcaccagccc ggtcgagacg cggtagaact tctcgaagat
     2701 tttcttctgc tcctcgggcg cgattcctac gccgtggtcg gtgacggaga tgtgtatgag
     2761 gttctccttc tgcccgacgc gcacggtgac ttccttcttc tcggcgtgct cggaatattt
     2821 aacggcgttg tcgagcaggt tcataagggc ctgcgcgatg gcgtcgcggt ctatgacggc
     2881 gagcgagagc gggcgtgggc tgccgtggaa gacgaccgag aagcccttct gcttgagccg
     2941 aacttcgcag gtcttcagcg tctcggagac gagcccctcg acgttggcgc gctcgaactg
     3001 gtaggtcttg cgccccgact cgatcttcga gaagtcgagt atgttgttga tgagctgcgt
     3061 gaggcggcgg ctctccgtct cgatgtgctc gccgtactcg cgtatcttct ccgagtcgcg
     3121 gacgcggccg agcttcatga actcgccgaa gacgcggatc gaagccagcg gcgtcctcag
     3181 ctcgtgcgag acgttcgaga cgaagtcggc cttcatctgc gaaagccgca tctcgcgcga
     3241 ggccgtgcgg agcgccagta tgatgccgcc tatcagcacc gccgtcatca gcagcgagag
     3301 cccgaggctc acgttgaagt tccagtgcgc ccactgcttg ggcgtcgtgt ggcggctgcg
     3361 tatgacgagg ttgtactccc agaagtaggg catgctctgc cccgtgtagt cgtcctggcc
     3421 ctcgacctcc tgcgacgtgt agaggagctt gtccctcccc tcgtagagcg agactattac
     3481 gttccggtcg cgcccatcgg ggaagaactt cgggagcgtc tcgccgacga cgcgcggcac
     3541 gagccgctcg acgaagaagg cgcggtctaa aatcatcccg gccgcgccga ccaccttctg
     3601 cgagtcgtcg agtatcggct tgtatatgac gcggttctct atgtcgcgct cctcgaagta
     3661 ggccatcggc gactgcacgg tcgtgccttc cttgctcagc acccgcatcg gcgcaacggc
     3721 ccggcgcacg gcgtggagct cgggagtggg aacgtcttca ctcgtcccct tcctgcccga
     3781 cgggtcgaag aagagcacct cggcctcgcc ctccgggtcg aaggccgcga tgaagagtcg
     3841 cttgacgccc tcgacctggc actgcgagaa gtggtacttg gcgcgcttca ggtcctcgcc
     3901 gctgatggcg taggccggga cggtgagaat ctcgtcggcc ttcgccttgt agaagttctt
     3961 gacctccttc tgcgcgtcgt tcaggtagtt cttcatcccg acctgcccgg cgacgatgga
     4021 ggtcttctcc agctccgaca gcgaccagta ttgcaggccg agaatgctca gcagcggcac
     4081 gacgacggcc gccagcccca cgagcagcac gtgcctcttc agtatttcgt taagcttcgc
     4141 cattaagact ccgttcgcgg ccccttttga cggcgcatac gatacaacgt aaatcgcccc
     4201 cgcgtctcta gccgaggcgg tgctttttac acggcggtta caacttttac caccttttac
     4261 ccggctttga tgacatttac tcgcccccgg cttacattcc gtgcctgacg tagttacacc
     4321 tcgcgcgggc cttcgactcg aacggaagga gtgggcaagt gatgagcgcc aagctttgta
     4381 taagattcgc tgcggcagcc gcgctggttc tggcaagcac tgccttcgcg caccgctcgc
     4441 tcgcttccgt ctcaccctgc gcggcggggg ctgcagcggc cacgcgcccg gaggcgcgcg
     4501 cctccgggcc tgtgctgcgc gggaggggcc tgctaaagtt cggcggctac gagctgaacg
     4561 tcacgttcac gccgggcggc aagctcgtca acttcgacat caccgcggcg cgcgggcgtt
     4621 agcctgagct tgaggcgccc tccccgacgg tcgcgcctta cgcctgtccg cttcctctca
     4681 cgggatcaaa actatcttgc cgtaggcgcc gggcttcagg acttcttcgt gggcgcgtgc
     4741 ggcttcggcg agcggcagct cgcggccgac gacggggcgg taggcgccgc tctcaaggcc
     4801 ggcgtgcaaa gcagcgtgta tgcttgcgag ttccttcgtc gaggcgttga agagggacat
     4861 gccgtggacg ctcgcgtcgc gcgtcatgag cagccgcggg tttatctcga cgctcccgcg
     4921 cgagcccacg acgacgacgc gcccgccctg cgccagcgcc gcgaagtcgc gaccgaggtt
     4981 cacgttcgcg agcatctcga ggataacgtc aacgccgcgc ccgccggtca gcgacgagag
     5041 ctcctccatg tagccttccg agcggtggtc gagcacgtgg tgagcgccct gctccgagac
     5101 gaggcgacgc ccctcctcag tcccgcccgt gcctatgacg gtaaagcctg cggcgcgagc
     5161 tatctgcacg gcggccgtcc cgaccccgcc gctcgcgccg tgaaccagca cggtctcgcc
     5221 cggcacgccg cgagcgcgtt ggaagagcgc gcggtaggcc gtcacgtagg gcgtgttgac
     5281 gcccgcgcct tgcgcgaacg tgacgttgcc cggcaggggg tgcacctgac cctcttcgca
     5341 cagtgcaagc tccgcgtaag tgccgctcag gctcccggcc gtgtaaacgt tctcgccctc
     5401 gcggaagcgc tcgacgccct cacccacgga ctcgactacg cccgcggcgt cgagccccgg
     5461 cgtgaagggc agcgcgggct tcacggcgtg cacgcccgag cgtatgtacg tgtcaaccgg
     5521 gttgacgccg actgcgcgca cgcgaaccaa gacctgcccc ggccctggcc tcggcgcctc
     5581 gacctcttcg agcctcaaga cctccggccc gccgaactcg tgagcacgaa tcgccttcat
     5641 cattaaaacc cccgtgtcag gagacgggct gccggccgcg gaaggcttcg gcgtggtcgc
     5701 gcgcgaactg gtcgaagctt ccgggctcgc gccccgtaac ctctcgcacg gcgtctgtga
     5761 cggcagccgc gcggcccgac gcgaacgtct cgttgagtag cccgagcgcg ccgacgagcc
     5821 actcgggaag cccctgcgcg agcgcgccgt tgcggaagtc gtcgggcgag acggggacgt
     5881 aagtgatttc gcggcccgcg gcctcggaga gcttcgcggc aacgtcgtgg taggagagcg
     5941 cctccggccc cgttatgacg taagacttgc cctcgtgacc ttcttcggcg agcgcgcgcg
     6001 cggcgacggc cgcaacgtcg cgcgtgtcaa cgaagctggc gcgggcgtcg ccgaccggct
     6061 ggtagatacg gccgccctcg gctatcgagc gcgcctgccc gagcaggttc tgcatgaaga
     6121 agttgggctg aagcatcgtg taggccatgc ccgacgcctt gagcatgtcc tcggcctcgc
     6181 cgtgccactt ggcgaagccg ccgcgcgcgt gcgcgtcggc gccgtaggca gagaacttga
     6241 cgacgtggcg caccccggcc ctcttcgccg cctcgatgaa gcgcgactgg tgctcgaccg
     6301 tctgcggcga ggggggcgtg agcagcaggg cgcgcccgac cccttcgagc gcgcggccta
     6361 gcgtctcggg gcggtcgaag tcgccctcga ccgtctcgaa gccggcctcg cggatgaagg
     6421 cggccttcga ctcgtcgcgc acgagcgcgc gcacgcgctt cgcgcccagg gcggcaagct
     6481 ccttcacaat gtcgcgcccc gtcgtgccag tcccgcccgt gatcagaatc atcttctttc
     6541 cccttcccgc atggtcagta tgaaagcgag gtgattagcg ggggcttcag cgccgacggc
     6601 gttcgcacgg aagtcgttca aacggccgtc gcgcgaaaaa aatttcaggc gccgtcgccg
     6661 cgcgccgctt cgagtagctc gttcaggcgg gcaagcttct tctcgtccat gtggccgagc
     6721 tgctcgcgca gaagctcttc tacgcggccg tcccactcgg cgaggaggcg caatccctcg
     6781 tcggtgatgc gcgtggctat gcggcggcgg tcgcgctcct cgcgctcgcg cgttacgagc
     6841 ccgcggtctt ccatgcggtc gagcaggcgc gtgatgtcag ggtctttcgt gatcaggcgg
     6901 tcgcttatct cgcggcaggc cgcgccgcac tcgcccgcgc cgcgcagtat gcgcagcacg
     6961 ttgtactgcg tgggcgtcag gcccgcgcgc ttgagcatct cggcgagcgg gcgcgagagc
     7021 gcgtcggccg tccgcagaag atttaggaag acctcttcct ctatcccggc gaacggcttt
     7081 gcctgcttca gctctttctg aagtttactg gccacgacgg caatgtagtc gttacaacga
     7141 cagttgtcaa caggcccgta ccgaggccgc ctgtcagaag ttgaagtccc tgccgaccac
     7201 ggtcgtgtca ctggagcgga aggcgggggc gggcatcatg tgcgcgggcc ggggcgtgag
     7261 ctgctgcccc ggcagttgcg gcaggccgaa ggagatgtcc tgcaccgtca ggcgcaacgg
     7321 cgccgaagga tctacttcga gcagaagctc gaagccttcg gcgggcggcg cggcgtagga
     7381 gagccgcaga ggacttctcc ggccgtcggc cgcggcggaa gagttgtcga gcagcggctt
     7441 gccgttgagg aatgcgcggc gcagcgcggc cccgtcttcc gcgtaggcga gcagcatcgg
     7501 cgcgccacgc cttgaagaaa ccttgagccg tatggtgcgc gtcgcgccct cgctcgtgtc
     7561 gctcagcacc tctgcggttg gcacggggag cgcggtggct ggggcgtcgg cgtgccagcc
     7621 ttgcggcctc acccagggga aaaccgccga gaggctctcg cccttcacgc ccgacgaggc
     7681 gaactgcgaa gtccactcgt cgggcgcggg gtctgcgctt acccaccggg ccgcgctcgc
     7741 gttcgagtcg aggaagtaga agacgttgtt cgccttcctg cggcgcgcgt cgaagccggc
     7801 ggaggccacg cc
//
LOCUS       DASPKR010000506         6988 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_333127, whole genome shotgun sequence.
ACCESSION   DASPKR010000506 DASPKR010000000
VERSION     DASPKR010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6988)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6988
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333127"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1011)
                     /locus_tag="VD968_13545"
     CDS             complement(<1..1011)
                     /locus_tag="VD968_13545"
                     /inference="COORDINATES: protein motif:HMM:NF013079.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M17 family peptidase N-terminal
                     domain-containing protein"
                     /protein_id="HYE15461.1"
                     /translation="MGRTQTVRVEVAAELPAPSGQEVVALCVYQDGADFAHMTNARGG
                     VLRAVEGALAGGDFEGKEGSALLVHAATEEGPRRLLLVGVGRTHDDDPDAFRRAGAIA
                     VRQAGAARARRVNLVVPVCYNPQAVLRALTEGAVLGAYDNGFYQNEEESAALEQLTLV
                     AEGQDWQDPRAEVERARIVAESVNWARALADEPGASLPPREFARRAAAMAEEFGLKVE
                     SLNAAEIRGRGMGALAGVGQGSQEEPALIVLRYEPEGAKPDDELWAFVGKGITFDTGG
                     ISIKHGLDMYEMKSDMAGGAAALGALRAIAQLKPARRVAAVVPAAENMPSGKSIKPGD
                     IVR"
     gene            1164..2777
                     /locus_tag="VD968_13550"
     CDS             1164..2777
                     /locus_tag="VD968_13550"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009166 - nucleotide catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HYE15462.1"
                     /translation="MATIRPRARLAVLLLLLATLAAPHAALAQAAKPCSVRVTLLQVN
                     DVYQFMPVERGAHGGVARLSTLRKRVKEESPNTLFLLAGDTISPSVESIEYKGRQMID
                     AWNAVGLDYSVFGNHEFDFGADELRKRVAESKFKWLGANVIEKSTGRTFAGTPVVEVR
                     EFDGVKLGLFGIVLPETATTSNPGPGVIFREACSTARAAVRRLRARGVGAIVALTHLS
                     LEEDKQLARCAPGIDLIVGGHEHTLLQSSSAGVPIFKMTADGREAGQFDLHINPATGK
                     VESLDWKVIPVNSDIPEDPEFAAAMQKYEAKQKELAVTVGRTDVALDARSAPNRTGET
                     NVASFIADAFREAAGADVALLNGGSIRADTIISRGELSLRDVLSILPFGGALVKIEVT
                     GETLRKALEHGLSNTRPGAEPGRFPQVSGVRYSFDATRAPGSRLVEVTVGGRPLEAQK
                     TYTLVTSKYVAEGGDQYDMFKGAPNLLTEKLTDSGVLRSAIAAAPNQTIAPRTDGRVR
                     RLDEPASQAPCKPAAAAARPAPARARRRR"
     gene            2802..3305
                     /locus_tag="VD968_13555"
     CDS             2802..3305
                     /locus_tag="VD968_13555"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15463.1"
                     /translation="MFEEEEKTGAGPRLRAVELFRRAYEAQMEKNYAEAVELYRRSIE
                     VCPTAEAHTFLGWVYSFEGRYAEAIDECLKAISVDASFGNPYNDIGSYLMAQGDFWTC
                     VRWFRRALAAARYESYAFPHFNLGRAYEERGRPLDAARHYGLALEERPDFAQAAKQLR
                     RVQARLN"
     gene            3333..3737
                     /locus_tag="VD968_13560"
     CDS             3333..3737
                     /locus_tag="VD968_13560"
                     /inference="COORDINATES: protein motif:HMM:NF016045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity iron permease family protein"
                     /protein_id="HYE15464.1"
                     /translation="MEPSRQTSLFGRFAKWTARVTGRPATFAVAVGIIAVWALTGPLF
                     DFSDTWQLIINTGTTIVTFLMVFLIQSTQNRDTEALQIKLDELIRISRKADNALLDLE
                     ELDEEQLDRIRGVYEELAEKARKEVRRRGRGA"
     gene            complement(3756..6083)
                     /locus_tag="VD968_13565"
     CDS             complement(3756..6083)
                     /locus_tag="VD968_13565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15465.1"
                     /translation="MSGIQFSPKSLQDLPLKQLGDASLKVDVAEASASYDGTPSAGGV
                     TFSIEASAKATIHAYNSPDDLKDEGVIGIPPEEDDGDEGVPAMPPQIAFDPARAWLKY
                     RVEAGVKGSAEVSFPPVGIEADGQAKVVFADYHAHSRDEVTAQAIAADLPRLRFAGDA
                     SDAAELGEGEALSYQVYGKLTAGVTLKWSDVITAGLGSLSGLLRPSELIKINVTPSVN
                     VAFSVEVEDDFLLVFTKGAGGRVGVAVRKAKSRQVGFKAGATVGAEFADESVVERALG
                     DLYEAALGATMTRVNNLFEAAKNAASFDQLTPAQKKLAEAIIARLNLGGVVQKPKDLK
                     KRWDEIQSQIAGRVKQAAKTKVELAFTYEYLRVKTDEALLLAELDADAFAECHGQLMR
                     RDISGALEALRGGRGLVKFYLRQETLERTRAWGFTLGIEPFGIKVGGRDKVSESRVTQ
                     ENVLGERRIAYDGLRRYDAEWNGDKVSWHADFKAEMKSFSASPTTCDFDYGLSFNWTW
                     EEKELSEGELRQCLDNAALWRVIRPGSVAEAAALFEGRFGEKATVALEFKLEGDDLKA
                     LLPAALSPAEAVILDGQELKGDRKLDFYGAHALAAAMPYNELFAGRREQEFRVRLYRP
                     LWLLYFADDSKSASAYASDASNHVRTKGGGVPDFMGLAEYERGPQAGTFSKMITLHAG
                     GLGNSGVHRNWNRFVKGLKALNSLVQKASCVQPDAVEKAFDDLRQFWHQSLYMRAAGA
                     FLLDRAERQGMLDRVERSLTVTFGDDEVISVGQSS"
     gene            6248..>6988
                     /locus_tag="VD968_13570"
     CDS             6248..>6988
                     /locus_tag="VD968_13570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15466.1"
                     /translation="MTRLALLTSRALLCALILLNCCAALARQAPAPEKTEAEKWREDL
                     RHMAEEMPRRHKNLFHTMTREQFEAAVRGLDARIPSLARHQIIVEMARIAAMVGDGHT
                     NVAPTRDPKIGFHAIPLKLYFFADGLFVRSAPREHAELVGARVVKIGGATPEQAVARL
                     RGITGHDNEMGVRFFAPHLLVMPEVLHALGLSEDAGSARILFERKGREEERVLKAAGA
                     ADLIPPDTDTTWAGKEGWVDMRDAAAAPA"
BASE COUNT         1092 a         2464 c         2330 g         1102 t
ORIGIN      
        1 gcggacgatg tcgccgggct tgatggactt gcccgagggc atgttctcgg ccgcggggac
       61 gaccgccgcg acgcgcctcg cgggtttgag ctgcgcgatg gcgcggaggg ccccgagcgc
      121 cgcggcgccg cccgccatgt cggacttcat ctcgtacatg tctaggccgt gcttgatgga
      181 gatgccgccc gtgtcgaagg tgatgccctt gccgacgaag gcccaaagct cgtcgtcggg
      241 cttggctccc tccggctcgt agcgcaggac gatgagcgcg ggctcttcct gcgagccctg
      301 gcccacgcct gcgagcgccc ccatgccgcg cccgcggatt tccgccgcgt tcaaagactc
      361 gaccttaagg ccgaactctt cggccatcgc ggcggcgcgg cgcgcgaact cgcgcggggg
      421 caaactcgcg cccggctcgt ccgccagagc gcgcgcccag ttcaccgact cggcgactat
      481 ccgcgccctc tcgacctcgg cgcgcgggtc ttgccagtcc tgcccctctg cgaccagcgt
      541 tagttgttcg agcgccgccg actcctcttc gttctggtag aagccgttgt cgtatgcgcc
      601 caggacggcg ccctcggtca gcgcgcgcag gacggcttga gggttatagc agaccggcac
      661 gaccaggttg acccgcctcg cgcgcgcggc ccccgcctgc cggacggcga ttgcgccggc
      721 acgcctgaag gcgtccgggt cgtcgtcatg agtgcggccc acaccgacga gaagcagccg
      781 gcgcgggcct tcctcggtcg cggcgtggac gaggagcgcg gaaccctcct tgccctcgaa
      841 gtcgcccccg gcgagagcgc cctccacggc gcggagcacg ccgccgcggg cgttcgtcat
      901 gtgcgcaaaa tccgcgccgt cctgatagac gcaaagggct acgacctcct gcccggacgg
      961 ggcgggaagc tcggcggcca cttcaaccct cactgtctgc gttcttccca tcggagacct
     1021 tttagccggc ggcgtgtttg gtatgcgttg accgcggtga gtataattca acctaaagcg
     1081 ccggcccaac ttcgacggca gcgagccctc tgccgcgcgg ccggcggcct cccgaaatcg
     1141 tcaaggaagg aaaactgtcc ccgatggcaa ccattcgccc gcgcgcgcgg ctcgccgtgc
     1201 tcctgctcct gctcgcaacg ctggcggcgc cgcacgcggc gctcgcgcag gctgccaagc
     1261 cgtgtagcgt ccgcgtcacg ctgcttcagg tcaacgacgt gtatcagttc atgcccgtcg
     1321 agcgcggcgc gcacggcggg gtggcccgcc tctccacgct tcgcaagcgc gtcaaggagg
     1381 agtcgccgaa cacgctcttc ctgctcgcgg gcgacaccat ctcgccctcg gtcgagtcca
     1441 tcgagtacaa gggccggcag atgattgacg cctggaacgc cgtcgggctc gactactctg
     1501 tgttcggcaa ccacgagttc gacttcggcg cagacgagtt gcgcaagcgc gtcgcggaat
     1561 cgaagttcaa gtggctcggc gcaaacgtca tagagaagag cacgggcagg acgttcgccg
     1621 gcacgcccgt cgtcgaggtc agggagttcg acggcgtcaa gctcggcctc ttcggcatag
     1681 tgctgcccga gacggcgacg acttccaacc ccggccccgg cgtcatcttc cgcgaggcgt
     1741 gctcgacggc gcgcgcggcc gtcaggcggc tccgcgcccg aggcgtcggc gccatcgtcg
     1801 cgctcacgca cctgtcgctc gaagaggaca agcagctcgc gcgctgcgcg cccggcatag
     1861 acctaatcgt cggcggccac gagcacacgc tcctccagtc gtcctccgcg ggcgtgccca
     1921 tcttcaagat gacggccgac gggcgcgagg cgggccagtt cgatctgcac atcaaccccg
     1981 cgacgggtaa ggtcgagtca ctcgactgga aggtgattcc cgtaaactcc gacatacccg
     2041 aagaccctga gttcgccgca gccatgcaga agtacgaggc gaagcagaag gagctagccg
     2101 tcacggtagg gcgcaccgac gtggcgctag acgcgcgcag cgcccccaac cgcacgggcg
     2161 agaccaacgt cgcctccttc atcgccgacg ccttccgcga ggcggctggc gccgacgtcg
     2221 cgctcttaaa cggcggctcc atccgggccg acaccataat ctcgcggggc gagctttcgc
     2281 tccgggacgt gctctcgata ctcccgttcg gcggcgccct cgtcaaaatc gaggtgacgg
     2341 gcgagacgct gcgaaaggcc ctcgagcacg ggctgtcgaa cacgaggccg ggggccgagc
     2401 ccggccgctt cccgcaggtc tccggggtgc gctactcctt cgacgccacg cgcgcgcccg
     2461 gctcgcgcct cgtagaagtc accgtgggcg gccgcccgct cgaagcgcag aagacctaca
     2521 cgctcgtcac ctcgaagtac gtggccgagg gcggcgacca gtacgacatg ttcaagggcg
     2581 cgcccaacct cctgacggag aagctgaccg actcgggcgt gctccgaagc gcgatagccg
     2641 cggcgcccaa ccagacgata gcgccgcgca ccgacgggcg cgttcgccgt ctcgacgagc
     2701 ccgcctcgca ggcgccgtgc aagccggccg ccgcggcggc caggcccgcg cccgcgcgcg
     2761 ccagacgcag gcgttagccc ccggcggagg acttgagttt tatgttcgag gaagaagaga
     2821 agacgggcgc ggggccgagg ctcagggcgg tcgagctttt ccgccgcgcc tacgaggcgc
     2881 agatggagaa gaactacgcc gaggccgtgg agctctaccg acgctcgatc gaggtgtgcc
     2941 cgaccgccga ggcgcacacc ttcctgggat gggtctatag cttcgagggg cgttatgccg
     3001 aggccataga cgagtgcctg aaggccataa gcgttgacgc ctccttcggc aacccctaca
     3061 acgacatcgg cagctacctc atggcgcagg gcgacttctg gacgtgcgtg cgctggttcc
     3121 gccgcgcgct cgcggccgcg cgctacgagt catacgcctt cccgcacttc aacctcggcc
     3181 gcgcctacga ggagcgcggc cgccccctcg acgccgcgcg ccactacggc ctcgccctcg
     3241 aagagcgccc cgacttcgcg caggccgcca aacagttgcg ccgcgtgcag gcgcggctga
     3301 actgaagggc gccccggccc ggagggcaga ctttggagcc gagcaggcag acctctttgt
     3361 tcgggcgctt cgccaagtgg acggcgcgcg tgacgggccg cccggcgacg ttcgccgtcg
     3421 cggtgggcat aatcgcggtg tgggccctga ccgggcctct tttcgacttc tcggacacct
     3481 ggcagttaat aattaacacc ggcacgacca tcgtcacctt cctgatggtc ttcctcatac
     3541 agagcacgca gaaccgcgac acggaggcgc tacagattaa gctcgacgag ctgatacgca
     3601 tctcgaggaa ggcggacaac gcgctgctcg acctcgaaga gctggacgag gagcagctcg
     3661 accgcatacg gggcgtttac gaagagctcg ccgagaaggc gcgcaaggaa gtcaggcgcc
     3721 gcggccgcgg cgcctgagcc ccccgcgccg cgcgctcacg aggactggcc gacgcttatg
     3781 acttcgtcgt cgccgaaggt cacggtgagc gagcgctcga cgcggtcgag catgccctga
     3841 cgctcggcgc ggtcgagcag gaaggcgccc gccgcgcgca tgtagagcga ctggtgccag
     3901 aactgccgga ggtcgtcgaa agccttctcg acggcgtccg gctgcacgca gctcgccttc
     3961 tgcaccaggg agttcagggc cttcaggccc ttcacgaacc ggttccagtt gcggtgcacg
     4021 cccgagttgc caaggccgcc cgcgtgcagc gttatcatct tcgagaacgt gccggcctgc
     4081 gggccgcgct cgtactcggc caggcccatg aagtcgggga cgccgccgcc cttagtcctc
     4141 acgtggttcg aggcgtccga ggcgtaggcg ctcgccgact tcgagtcgtc ggcgaagtac
     4201 aaaagccaga gcgggcggta gagcctgacg cggaactcct gctcgcggcg gcccgcgaaa
     4261 agctcgttgt agggcatggc ggcggcgagc gcgtgcgcgc cgtagaagtc gagcttgcgg
     4321 tcgcccttga gctcctgccc gtcgagtatg acggcctcgg cggggctgag cgcggccggg
     4381 agcagcgcct tcaggtcgtc gccttcgagc ttgaactcga gcgcgacggt cgccttctcg
     4441 ccgaacctgc cctcgaagag tgccgcggcc tcggcgacgc tccccggcct tatgacgcgc
     4501 cagagcgccg cgttgtcgag gcactggcgc agctcgccct ccgacagctc cttctcctcc
     4561 cacgtccagt tgaagctcag gccgtagtcg aagtcgcacg tcgtcggcga cgccgagaag
     4621 gacttcatct cggccttgaa gtcggcgtgc cacgagacct tgtcgccgtt ccactcggcg
     4681 tcgtagcggc gcagcccgtc gtaggcgatg cgccgctcgc cgaggacgtt ctcctgcgtg
     4741 acgcgcgact cggagacctt gtccctgccg cccaccttta tcccgaaggg ctctatgccc
     4801 agcgtgaagc cccacgcgcg cgtgcgctca agcgtctcct gccgcaggta gaacttcaca
     4861 aggccgcgcc cgcccctcag cgcttcgagc gcgcccgaga tgtcgcggcg catcagttgg
     4921 ccgtggcact cggcgaaggc gtcggcgtcg agctcggcga gcaggagcgc ctcgtcggtc
     4981 ttgacgcgca ggtactcgta ggtgaatgcc agctcgacct tcgtcttcgc cgcctgcttt
     5041 accctcccgg ctatctgcga ctgtatctcg tcccagcgct tcttcaggtc tttcggcttc
     5101 tggacgacgc cgccgaggtt gagccgggcg atgatggcct cggccaactt cttttgcgcg
     5161 ggcgtgagct ggtcgaagga cgcggcgttc ttcgccgcct cgaagaggtt gttgacgcgc
     5221 gtcatggtcg cgccgagcgc ggcctcgtag aggtcgccga gcgcgcgctc gaccaccgac
     5281 tcgtcggcga actcggcgcc gactgtcgcg cccgccttga agccgacctg cctcgacttc
     5341 gccttccgca cggcgacgcc tacgcgcccg ccagcgccct tcgtgaagac gagcaggaag
     5401 tcgtcctcga cctcgacgct gaaggcgacg ttgacggacg gcgtgacgtt tatctttatc
     5461 agctcgctcg ggcggagcag cccgctaagc gacccaaggc cggccgttat cacgtccgac
     5521 cacttgagcg tgaccccggc cgtgagcttc ccgtaaacct ggtaggagag cgcctcgccc
     5581 tcgccgagct ccgcggcgtc cgaggcgtcg ccggcgaagc gaaggcgcgg taggtcggcg
     5641 gcgatggcct gcgccgtcac ctcgtcgcgc gagtgcgcgt ggtagtcggc gaagactact
     5701 ttggcctgcc cgtcggcctc aatccccacg ggcgggaagc tcacctcggc cgaacccttc
     5761 acgcccgcct cgacgcggta ctttagccac gcgcgcgcgg ggtcgaaggc gatctgcggc
     5821 ggcatcgcgg gaacgccctc atcgccgtcg tcctcttcgg gcggaatgcc gatgacgccc
     5881 tcgtccttca aatcgtcggg cgagttgtag gcgtgtatcg tcgccttcgc cgaggcttcg
     5941 atggagaagg tgacgccgcc ggccgagggc gtgccgtcgt aggaggcgga agcctcggcc
     6001 acgtcaacct tgagggacgc gtcgcctagc tgtttgaggg gcaggtcttg caggctcttc
     6061 ggggaaaact gtattccgct catcgcatgt ctcctgtcgg tttctcggaa ggcccgtcca
     6121 cgcttttgta tggcgcgcgg gccgcttacg tttggcgccg ccttttttgt cacggacggg
     6181 gcgcgggcgg tgttctaggt tcataaaggc ccgaccggcc gactaccccg cccggaggca
     6241 aaaacaagtg acgagactgg cccttctgac ttcgcgcgcg ttgctgtgcg cgctcattct
     6301 cctcaactgc tgcgcggcgc tcgcgcgtca ggctcccgcg cccgagaaga ccgaggcaga
     6361 gaagtggcgc gaggacttac gccacatggc cgaggagatg ccgcgccgcc acaagaacct
     6421 cttccacacg atgacgcgcg agcagttcga ggcggccgtc cgcggcctcg acgcgcggat
     6481 accctcgctc gcgcgccacc agataatcgt agagatggcg cgcatcgccg cgatggtcgg
     6541 cgacggccac acgaacgtcg cgcccacgcg cgaccccaaa atcggcttcc acgccatccc
     6601 cctaaaactt tacttcttcg ccgacggcct cttcgtgcgc tcggcccccc gcgagcacgc
     6661 ggaactcgtg ggcgcgcgcg tcgtcaaaat cggcggcgcg actcccgagc aggccgtcgc
     6721 gcgcctgcgc gggataaccg ggcacgacaa cgagatgggc gtccggttct tcgccccgca
     6781 cctgctggtc atgccggaag tcctgcacgc gctcgggctc tcggaggacg cgggctcggc
     6841 gcgcatcctc ttcgagagga agggcaggga ggaggagcgc gtgctgaagg ccgcgggcgc
     6901 ggccgacctc atcccgccgg acaccgacac gacgtgggcc gggaaggagg gctgggtgga
     6961 catgcgcgac gcggcggccg cgcccgcg
//
LOCUS       DASPKR010000507         4087 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1887236, whole genome shotgun sequence.
ACCESSION   DASPKR010000507 DASPKR010000000
VERSION     DASPKR010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4087)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4087
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1887236"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..917)
                     /locus_tag="VD968_13575"
     CDS             complement(<1..917)
                     /locus_tag="VD968_13575"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYE15467.1"
                     /translation="MSKAAQEHLSGSPLTTYSEDETMFRASVREFAEGEIRPRVEHMD
                     EDARMAPEIIKQLFDLGLMSIETPEEYGGTGASFFTAIIGVEELSRVDPSVGVLMDVQ
                     NTLVNNALIRWGSPEQKKKYLSRLASDTVGAYALSEAGSGSDAFAMTTRAFDRGDHYE
                     LTGHKLWITNGNEAGIFIVFANAKPEEGYRGITAFIVEKGFEGFSVGKKENKLGIRAS
                     STTEIILDGCKVPKENVLGEAGRGYKVSIETLNEGRIGIGAQMIGLARGALEHALRYT
                     AERSQFGKTINQFQGVQFQLAEMATQIEAA"
     gene            1095..2210
                     /locus_tag="VD968_13580"
     CDS             1095..2210
                     /locus_tag="VD968_13580"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HYE15468.1"
                     /translation="MTKGKSASRRFAPAGAFFALAGLLLFAYFVWKAGPWEIWANISK
                     IGAGFVWVILLSGLRFSVRSFAWTLCFDPPHRLPFIEAFKAYLVGDTAGNIVPLGLAV
                     SEPTKVALVKERVPLVAALSAIAVENIFYMLSVALFIFCGAAALLLSFRLPKVLRWSS
                     GGVIVGALVFALFAFFAARRQWKFLSGSLDWLAARGLGRRFAERRRAGVVALEEKIYG
                     FYARRRGAVPVILALEAAFHMLGVAEAYLTIMLISGSPPTLLSAFLFESVNRVITMVF
                     KFVPLRAGVDEAGTGQLASLLALGMTAGVTLAVVRKARMVFWMTAGVALLAGRGLSLR
                     RVAEGAAESAGEWDAAAAEEGGPSEGAPAAPGPGLQG"
     gene            2220..3890
                     /locus_tag="VD968_13585"
     CDS             2220..3890
                     /locus_tag="VD968_13585"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYE15469.1"
                     /translation="MARPIELDPEGALAGEAAGRVRARRLAGAVERYAVVALVLLAAA
                     GLTLRLAGVGAVGLAEDEVNKLDAARAYARGDITANAEHPMVMKSLILVSVGAASAWN
                     ARAPAPLRVSDEAALRFPNILFGALTVFPLFLLTAALFDRRTALAAAALWAFGVNAAT
                     YNRVAKEDTLLVFFMLFAFYFYARAKQTSGFDPRRKRRNYLLSAASFGLMFASKYFPH
                     YFGLNMLYHHHARLREREPGEPRGSTPAYFYAAVLAAFLAANPAILLPQTWSYLSAYS
                     SEGLLTHHGYLMGETLYDNVVSKSPFGATPVYFYLLFLLIKTPPVLLVMLVVGLFVAA
                     KRRREPGPLFVLMMFVLWVVPYSLFGAKWLRYALSLMPFVYMLAAVGVVWAAGRASAL
                     ARRLRLRGAAAGAAVAIFLLAAPAWAALRSAPHHALYTNLLAPGRAGYYFPHDEFYDD
                     GLREALRYVAEHAPPGATVAHETPGVARYYLEKFGRADLRSRTISDPDFELTREPPPT
                     YAILQRGRTYFENREELRQARSGAAGFTLRREVLIEGALAAEVYANDK"
BASE COUNT          545 a         1382 c         1393 g          767 t
ORIGIN      
        1 gccgcctcga tctgcgtcgc catctcggcc aactggaact gcacgccctg gaactggttg
       61 atggtcttgc cgaactgcga gcgctccgcc gtgtagcgca gcgcgtgctc gagcgccccg
      121 cgcgcgagcc ctatcatctg cgcgccgatg ccgatgcgcc cctcgttcag agtctcgatc
      181 gagaccttgt agccgcggcc cgcctcgccg agcacgttct ccttcggcac cttgcagccg
      241 tcgaggatta tctccgtggt ggacgaggcg cgtatgccga gcttgttctc cttcttgccg
      301 acggagaagc cctcgaaacc cttctcgacg atgaaggcgg tgatgccgcg gtagccctcc
      361 tccggcttgg cgttggcgaa gacgatgaag atgcctgcct cgttgccgtt cgttatccag
      421 agcttgtggc ccgttaactc gtagtggtcg ccgcggtcga aggcgcgcgt cgtcatggcg
      481 aaggcgtcgg agccggagcc cgcctcggag agcgcgtagg cgcctacggt gtcggaggcc
      541 aagcgcgaga ggtacttctt cttctgctcg gggctccccc agcgtatgag tgcgttgttg
      601 acgagcgtgt tctgcacgtc catcaggacg cccaccgacg ggtcaacgcg cgaaagctcc
      661 tcgacgccta tgatcgcggt gaagaagctg gcgccggtgc cgccgtactc ctcgggcgtc
      721 tcgatgctca tcaggccgag gtcgaagagc tgcttgatga tttcgggggc catcctggca
      781 tcctcgtcca tgtgctcgac gcgcgggcga atctcgccct cggcgaactc gcgcacggag
      841 gcgcggaaca tcgtctcgtc ctcggagtat gtggtcagag ggcttccgct caggtgttct
      901 tgtgccgctt tactcatctc gattatctcg ccggaaaaag gatttaaggt gtacgccgta
      961 gcatcgctca agaggacgct ttcggtcaac tccgcgtgac tcggcgcggc cgagggtttt
     1021 gaggccgggc gggtgttgac gtatcttgct tgcgcggcgg ggcgggaatt taaaagggcc
     1081 gggctgtcgt gcagatgact aagggcaaga gcgcttcgag gaggttcgcg ccggcggggg
     1141 cgtttttcgc gctcgccggc ctgctgctct tcgcgtactt cgtatggaag gcgggcccgt
     1201 gggagatctg ggcgaacatc tcgaagatag gcgcgggctt cgtgtgggtg atactgctct
     1261 cgggccttcg gttcagcgtg cgctcgttcg cgtggacgct ctgcttcgac ccgccgcacc
     1321 gcctgccgtt tatagaggcg ttcaaggctt acctcgtcgg ggacaccgcc ggcaacatcg
     1381 taccgctcgg cctcgccgtc agcgagccga cgaaggtcgc gctcgtcaag gagcgcgtgc
     1441 cgctggtcgc ggcgctctcg gccatagcgg tcgagaacat cttctacatg ctgtcggtcg
     1501 cgctcttcat cttctgcggg gcggcggcgc tgcttttgag cttccggctg ccgaaggtgc
     1561 tgcggtggtc gagcgggggg gtgatcgtag gcgcgctcgt cttcgcgctc ttcgccttct
     1621 tcgccgcgcg gcgccagtgg aagttccttt cgggctcgct cgactggctg gcggcgcggg
     1681 gcctgggccg ccgcttcgcg gagcggcggc gcgcgggcgt cgtagcgctc gaagagaaaa
     1741 tctacggctt ctacgcgcgc aggcgcgggg ccgtgccggt gatactcgcg ctagaggcgg
     1801 cgttccacat gctcggcgtg gccgaagcct acctgacgat catgctgata agcggctcgc
     1861 cgccaacgct cctttcggcc ttcctcttcg agtcggtcaa ccgcgtcatc acgatggtct
     1921 tcaagttcgt gccgctgcgc gcgggcgtgg acgaggccgg gacggggcag ctcgcgagcc
     1981 tgctggcgct gggcatgacg gccggcgtca cgctcgccgt cgtgcgcaag gcgcgcatgg
     2041 tcttctggat gaccgccggc gtggccctgc tcgccgggcg cggcctctcg ctcaggcgcg
     2101 tcgcggaggg cgcggccgag agcgcgggcg agtgggacgc ggcggcggcc gaagagggcg
     2161 ggccgtccga gggcgcgccc gcggcgccgg gcccggggct tcagggctga gggggctttt
     2221 tggcgcgacc gattgagctt gatcccgagg gcgcgctcgc cggcgaggcc gccgggcgcg
     2281 tgcgcgcgcg gcgactggcc ggagcggtcg aacgttacgc cgtcgtggcg ctcgtgctgc
     2341 tcgcggccgc cgggctgact ctgcggctgg cgggcgtagg cgcggtcggg ctcgccgagg
     2401 acgaggtcaa caagctcgac gccgcgcgcg cctacgcgcg gggcgacata acggccaacg
     2461 ccgagcaccc gatggtgatg aagtcgctca tcctcgtctc ggtcggcgcc gcctctgcct
     2521 ggaacgcccg cgcgcccgcc ccgctccgcg taagcgacga ggcggcgcta aggttcccca
     2581 acatactctt cggcgcgctc acggtcttcc cgctgttcct tttgacggcc gccctcttcg
     2641 accgccgcac ggcgctcgcg gccgccgcgc tctgggcctt cggcgtgaac gccgccacct
     2701 acaaccgcgt ggcgaaggaa gacactctgc tcgtcttctt catgctcttc gccttctact
     2761 tctacgcgcg cgcaaagcag acgagcggct tcgacccccg ccgcaagcgc cgcaactacc
     2821 tgctgagcgc cgcctcgttc gggctgatgt tcgcttcgaa gtatttcccg cactacttcg
     2881 gcctgaacat gctctaccac caccacgcgc ggctgcgcga gcgcgagccg ggcgagccgc
     2941 gcggctcgac ccccgcatac ttctacgcgg ccgtgctcgc ggccttcctc gcggcgaacc
     3001 ccgcgatact tttgccgcag acctggagct acctgagcgc ctattcgagc gaagggcttt
     3061 tgacgcacca cggctacctt atgggcgaga cgctctacga caacgtcgtg tcgaagtcgc
     3121 ccttcggggc gacgcccgtc tatttctact tgctcttcct tctgataaag acgccgcccg
     3181 tgcttctggt catgctcgtc gtggggctat tcgtcgcggc gaagcgtcgg agggagcccg
     3241 gcccgctgtt cgtgctgatg atgttcgtgc tgtgggtggt gccttactcg ctcttcggcg
     3301 cgaagtggct gcgctacgcg ctgagcctca tgccgttcgt ctatatgctc gcggccgtcg
     3361 gcgtcgtgtg ggcggccggg cgcgcgtcgg ctctcgcgcg gcgcctgcgc ctgcgcgggg
     3421 ccgcggcggg cgccgcggtc gcaatcttcc tgctggccgc gcccgcctgg gcggcgctcc
     3481 gcagcgcgcc gcaccacgcg ctctacacga acctgctcgc gccgggccgc gccggctact
     3541 acttcccgca cgacgagttc tacgacgacg ggctgcgcga ggcccttcgc tacgtggcag
     3601 agcacgcgcc gcccggcgcg acggtggcgc acgagacgcc gggagttgcg cgctactacc
     3661 tcgaaaagtt cgggcgcgca gaccttcgct cgcgcaccat ctcagacccc gacttcgagc
     3721 tgacgcgcga gccgccgccg acctacgcga tactccagcg tggccgcacc tacttcgaga
     3781 accgcgaaga gctgcggcag gctcgctccg gcgccgccgg cttcacgctc cgccgcgaag
     3841 tcctcatcga aggcgccctc gccgcggaag tttacgctaa cgacaagtag ccggtagcca
     3901 gtagtcagta ggctccgccc tgagtgggtt ggccccggga acctgtccgc ctagatggga
     3961 aggttcttct actggctact ggctactgct ttctttatcg tcgcgcgctt cttccagcgg
     4021 cggtacatct ccagcgagag gccgagccag aggccggcga acaggtatgc gccgagcgtg
     4081 tcgctgg
//
LOCUS       DASPKR010000508         4805 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_852975, whole genome shotgun sequence.
ACCESSION   DASPKR010000508 DASPKR010000000
VERSION     DASPKR010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4805)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4805
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_852975"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            271..663
                     /locus_tag="VD968_13590"
     CDS             271..663
                     /locus_tag="VD968_13590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15470.1"
                     /translation="MVKRLTTILLLLALGAGVASGAPLHAGAEECDMGGAMEMMDCCK
                     RARSVGNTPEIQAARLCCAVNCQQGGANGPSSAVRVSAPQVAAQHPAATSSPMPAPLA
                     PPRAWRDPGLSSADESPPLYLINLAFLI"
     gene            871..1278
                     /locus_tag="VD968_13595"
     CDS             871..1278
                     /locus_tag="VD968_13595"
                     /inference="COORDINATES: protein motif:HMM:NF024515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HYE15471.1"
                     /translation="MKKLIALCIATALLAAAAACGSGEDKEIKSGKVGNLTVSISNPQ
                     GVLKHGDQEFTVTFKDASGKPVDVGSASLNFYMPAMGAMPVMNDPATLTTTSTPGVYR
                     AKVRLQMAGEWQAQVAYEGAAGAAKGSFPVTAQ"
     gene            1300..4482
                     /locus_tag="VD968_13600"
     CDS             1300..4482
                     /locus_tag="VD968_13600"
                     /inference="COORDINATES: protein motif:HMM:TIGR00914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0051139 - metal cation:proton antiporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CusA/CzcA family heavy metal efflux RND
                     transporter"
                     /protein_id="HYE15472.1"
                     /translation="MINWLIEVSMRYRAVVVAAYLGLAAWGYWALLSTPIDAIPDLSD
                     NQVIVFTDWPGRSPQEVEDQVTYPLVTNLQGLAGVRTVRASSAFSFSMVNVIFEDDVE
                     LYWARTRVLERLNLVTGQLPEGLKPTLGPDATGVGQIFWYTLESDTHSLRDLRSLQDW
                     FVRYQLNSVPGIAEVASVGGHVQQYQVDVDPNRLRAYGLPLSAVVEAVERSNTNVGGN
                     VIEQSGQWAVVRGIGLVESVADVENIVIGAENGTPIYVRNVAAVKLGNAFRTGALDKD
                     GREAVGGVVIARYGVSALEAIEAVKRKIEELKQGLPAGVRLVPFYDRTQLINRAAGTL
                     KEALIEELILVTLVNLVFLAHFRSVLIVTIPLPLAVLVSFLFMRYFGITSNIMSLAGI
                     AIAISDLVDAGIVVTENAYRSVEGADSRDRRLVWRLVLDATRKVGLPIFASMAIIILA
                     FAPVFALTGQEGKLFRPLAFTKTFAMVGAAFMAVTLVPVLCTYFLGGRLRPEEWNPLM
                     RALRGVYKPLLVKALRHRLTTVAVALVFFAGAVFVATRVGSEFMPPLNEGDLMYMPVT
                     DPAVSMDEALRIMQRQDEILKSFPEVEWAVGKAGRAETSTDPSPVNMNETIVHLKPES
                     EWREGMTREKLVAEMDAALRMPGVTNIWTQPIINRIEMLATGMRSQVGIKVFGNDLGT
                     LEETSRRIADALRTVPGAADVYPEQIGGAPYVDIKINRTAAARYGIGTATIQDVIERG
                     IGETNLTVTIEGRRRFPIRVRYAPEFRDSPESIGRIPVTSPSGVPVPLAQIAEIRTVE
                     GPSMIQSENGLLRGTVLLNVRGRDIGGFVEEAKRHLAARVQMPAGYYMQWSGQYENQE
                     RARKRLMIVVPIVILIIFVTLYLTYRSALEAAHVLLAVPFALTGGFYLLWLLDYNFSV
                     AVWVGFIALFGAAVQTGIVMVVYLQEAVERKRRELGRLNRETLMEAVTEGALLRLRPK
                     VMTVSTIVAGLLPIMWSTSAGSEVMKPLATPVFGGMLSSLLHVLIVTPVIFYWLRLRE
                     LKRDERPGAGDGTPRDEGPGVEEAEEALVR"
     gene            4502..>4805
                     /locus_tag="VD968_13605"
     CDS             4502..>4805
                     /locus_tag="VD968_13605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15473.1"
                     /translation="MSKVLRLKRTVTAALLAALTVAAQGGATAARAQSPAPPRQEAGV
                     VAVLLQEDRALERYLDSVAGLDVEQAVQIALERNGELLAARKELDAARALVRQAALR"
BASE COUNT          780 a         1602 c         1631 g          792 t
ORIGIN      
        1 gctaccgacc tcctttgtgg cgggaagttt atgctgcccg gcgctccgcc gcaagatttt
       61 cttcgcgcga cggccgacgc gggcgccttc ggttaagccg ggaccgagcc ccgcgcgctc
      121 tcaaccgaca gcgatttccc acaaccagag gaggaaatcg cgcatccgag tttccctcgc
      181 gcggcggaat ttggcataat gccggccggc acggtcctta ctttgtaaca agcccggtgg
      241 atagtcttta gcggcggcag tctttctccg atggttaaac ggctcacgac gatactcctc
      301 ctcctggcgc tcggcgccgg cgttgcctcc ggcgcgccgc tgcacgccgg ggcggaggag
      361 tgcgacatgg gcggcgcgat ggagatgatg gactgctgca agcgcgcgcg ctccgtcggc
      421 aacacgcccg agatacaggc cgcgcgcctg tgctgcgccg tcaactgcca gcagggcggc
      481 gcgaacggcc cctcttcggc cgtccgagtc tcggcgccgc aggtcgccgc ccaacacccg
      541 gctgcgactt cgtcgcctat gcccgcgccg ctcgcgcccc cgcgcgcgtg gcgcgacccc
      601 ggactgtcaa gcgccgacga atcacccccc ctctacctta tcaatctcgc attcctgatc
      661 tgaaactctg taggcggtag tgtgccttcc tgactcgccc cagcgcgggc gagggacggg
      721 cgggttcggc gcgggcctct tgcccggggc cgggccgcgg cacactacgc acgccgacgg
      781 ggccggagtg tgcgcggccg gcggctccgc gcgtcagccg tgcgcgcacg gacgggtata
      841 gaccttttta ctcataagga gaatcaagcc atgaagaagt taatcgcgct ctgcatcgcg
      901 acggcgctcc tcgccgccgc ggcggcctgc ggctcgggcg aggacaagga gattaagagc
      961 ggcaaggttg ggaacctgac cgtcagcatc tcgaacccgc agggcgtcct caagcacggc
     1021 gaccaggagt tcacagtcac cttcaaggac gcatccggca agcccgttga cgtcggctcc
     1081 gcctcgctca acttctacat gcctgcgatg ggggcgatgc ccgtgatgaa cgacccggcg
     1141 acgctgacaa cgacgagcac gcccggcgtc tatcgcgcga aggtgaggct tcagatggct
     1201 ggcgagtggc aggcgcaggt cgcgtacgaa ggcgcggccg gcgccgcaaa agggagcttc
     1261 cccgtcacgg cgcagtaagg cggcgccggg agggcaggga tgattaactg gctcatagaa
     1321 gtctcgatgc gctaccgcgc ggtggtcgtg gccgcctacc tgggcctcgc cgcgtggggt
     1381 tactgggccc tgctctcgac gccgattgac gccatcccgg acctctccga caaccaggtc
     1441 atagtcttca ccgactggcc ggggcgctcg ccgcaggagg tcgaagatca agtcacctac
     1501 ccgctcgtca ccaacctgca agggctcgcg ggcgttcgca ccgtccgcgc ctcctcggcc
     1561 ttcagcttct cgatggtcaa cgtcatcttc gaggacgacg ttgagcttta ctgggcgcgc
     1621 acgcgcgtgc tggaacgcct gaacttggtc acgggtcaac tgccggaggg cttgaagccc
     1681 acgctcgggc ctgacgcgac gggcgtcggg caaatcttct ggtacacgct agagagcgac
     1741 acgcactccc tgcgcgacct gcgctccttg caggactggt tcgtccgcta ccaactcaac
     1801 tccgtgcctg ggatagccga ggtcgcaagc gtcggcggcc acgtgcagca gtaccaggtg
     1861 gacgttgacc cgaaccgcct gcgcgcctac ggcctgccgc tctcggccgt ggtcgaggcc
     1921 gtcgagcgct cgaacacgaa cgtcggcggg aacgtcatcg agcagtcggg ccagtgggca
     1981 gtcgtgcgcg gcatcggctt ggtcgagtcg gtcgcggacg ttgagaacat cgtcatcggg
     2041 gcggagaacg gcaccccgat ttacgtccgc aacgtggcgg ccgtcaagct cggcaacgcc
     2101 ttccgcacgg gcgcgctcga caaggacggg cgcgaggccg tcggcggcgt cgtcatcgcg
     2161 cgctacggcg tgagcgcgct cgaagccatc gaggccgtca agcgcaagat cgaggagctg
     2221 aagcaggggc ttcccgcggg cgtccgcctc gtccccttct acgaccgcac gcagctaatc
     2281 aaccgcgccg ccggcacgct gaaggaggcg ctgattgaag agctgatact cgtcacgctc
     2341 gtcaacctcg tcttcctcgc gcacttccgc tcggtgctga tcgtgacgat accgctgccg
     2401 ctcgcggtgc tcgtctcgtt cctcttcatg cgttacttcg gcatcacgtc gaacatcatg
     2461 tcgctggccg gcatagccat cgccatctcc gacctcgttg acgccgggat agtcgtcacg
     2521 gagaacgcct accgctcggt cgagggcgcc gactcgcgcg accgccggct ggtgtggcgc
     2581 ctcgtcctcg acgccaccag gaaggtcggc ctgcccatct tcgcctcgat ggcgataatc
     2641 atcctggcgt tcgcgccggt cttcgcgctg acggggcagg aggggaagct cttccgcccg
     2701 ctcgccttca ccaagacctt cgcgatggtc ggcgcggcct tcatggcggt cacgctcgtc
     2761 ccggtgctct gcacctactt cctcggcggc aggctgcggc ccgaggagtg gaacccgctg
     2821 atgcgcgccc ttcgcggcgt ctataagccg ctgctcgtca aggcgctaag gcacaggctc
     2881 acgaccgtcg cggtcgcgct cgtcttcttc gcgggcgccg tcttcgtcgc cacgcgcgtc
     2941 ggcagcgagt tcatgccgcc cttgaacgag ggcgacctga tgtacatgcc cgtcactgac
     3001 cctgccgtct cgatggacga ggcgctgcgc atcatgcaaa ggcaggacga gattctaaaa
     3061 agcttccccg aggtcgagtg ggccgtcggg aaggccggcc gcgccgagac ttccacagac
     3121 ccttcgcccg tcaacatgaa cgagaccatc gtccacctga agcccgagtc ggagtggcgc
     3181 gaagggatga cgcgcgagaa gctggtggcc gagatggacg cggccttgag gatgccggga
     3241 gtgacgaaca tctggacgca gcccatcatc aaccgcatcg agatgctggc gacggggatg
     3301 cgctcgcagg tcggcatcaa agtattcggc aacgacctcg gcacgctcga agagacctcg
     3361 cggcgcatcg ccgacgcgct caggacagtc cccggcgcgg ccgacgttta ccccgagcag
     3421 ataggcggcg cgccctacgt tgacataaaa atcaaccgca cggcggccgc gcgctacggg
     3481 atagggacgg ccacgattca ggacgtgatc gagcgcggca tcggcgagac gaatctgacc
     3541 gtgacgattg agggccgccg tcgcttcccg atacgggtgc gctacgcgcc ggagttccgc
     3601 gactcgcccg agtcaatcgg ccgaatcccc gtcacgtcgc cctcgggcgt gccagtaccc
     3661 ttggcccaga tagccgagat ccgcaccgtc gaaggcccct cgatgataca gagcgagaac
     3721 gggctgctgc gcgggacggt gcttctgaac gtgcggggcc gggacatcgg cggcttcgtc
     3781 gaggaggcca agcgacacct tgccgcgcgg gtgcagatgc cggccggcta ctacatgcag
     3841 tggagcggcc agtacgagaa ccaggagcgc gcgcgcaaga ggctgatgat agtcgtgccc
     3901 atcgtcatcc tcatcatctt cgtcacgctc tatctcactt atcgctcggc gctcgaagcg
     3961 gcgcacgtgc tcctcgccgt gccgttcgcg ctgacgggcg ggttctacct gctctggctg
     4021 ctcgactaca acttctcggt cgccgtgtgg gtcggcttca tcgcgctctt cggcgcggcg
     4081 gtgcagacgg ggatagtgat ggtcgtctat ctgcaggagg ccgtcgagcg gaagcggcgg
     4141 gagcttggcc gcctgaaccg cgagacgctc atggaagccg tgacggaggg ggcgctgctg
     4201 cggctgcggc cgaaggtgat gacggtgtcc accatcgtgg cggggctgct gcccatcatg
     4261 tggtcaacga gcgcggggtc ggaggtgatg aagccgctcg ccacgcccgt cttcggcggg
     4321 atgctgtcga gcctcctgca cgtcctcatc gtcacgccgg tcatcttcta ctggctgcgg
     4381 ctgagggagc ttaagaggga cgaaaggccc ggcgcgggcg acgggacgcc gcgtgacgag
     4441 gggccgggtg tcgaggaggc tgaggaggcg ctcgtcaggt agcgccgggg ggttatcagt
     4501 catgtcgaag gtattgaggt tgaagaggac ggtcacggcg gcgctgctag ccgcgctcac
     4561 ggtcgcggcg caggggggcg cgacggccgc gcgcgcgcag tcgcccgcgc cgccgcggca
     4621 ggaggcgggc gtcgtggccg tgctcttgca ggaggacagg gcgctcgaac gctacctcga
     4681 ctcggtcgcg gggctcgacg ttgagcaggc cgtgcagatc gcgctagaac gcaacggcga
     4741 gctgctcgcc gcgcggaaag agttggacgc cgcgcgcgct ctggttcggc aggcggcctt
     4801 gcgcg
//
LOCUS       DASPKR010000509         2853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_465065, whole genome shotgun sequence.
ACCESSION   DASPKR010000509 DASPKR010000000
VERSION     DASPKR010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2853)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2853
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465065"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..610)
                     /locus_tag="VD968_13610"
     CDS             complement(<1..610)
                     /locus_tag="VD968_13610"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HYE15474.1"
                     /translation="MIRKFSLSFAVILAVLALGSVARADTVTLVGIGGTGVDATISNY
                     TLVGNTFTFTITNTATEPGATGTITNIGFALPGDRLNNYTLIQDTTGNYEIAFDLNAT
                     AGAQNFVSTFDLVLANKTNGNLTFGGGSVNDGIAPGASATFTITGDFSGLTPDEIAQA
                     IFARFQDVNNGDSDVARANPIPEPMTMILFGTGLAGLAARARR"
     gene            complement(870..2630)
                     /gene="murJ"
                     /locus_tag="VD968_13615"
     CDS             complement(870..2630)
                     /gene="murJ"
                     /locus_tag="VD968_13615"
                     /inference="COORDINATES: protein motif:HMM:TIGR01695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HYE15475.1"
                     /translation="MRRDEEGGREAKQGAPHEEASVVAGETNLTVGSVTAEFPADRTS
                     AAPEEKRSAESTKRGALLVGAGILLSRIVGLLRQRVFAYYFGISVAGDAYAAAFRIPN
                     FLQNVFGEGALSASFIPVYAKLLAKGEREEAERVAGAVFSLLALVTSLLVLGGVLAAP
                     LLTDIFAPGFEGGKRDLTVQLVRVFFPGAGLLVLSAWCLGVLNSHRRFFLSYAAPIIW
                     NASIIVALVLSGTPVRHVGSGELGVWGAVARYTAWGSVVGSALQFGIQLPRVLGLLGG
                     LRLSLAAANEHVRTVVRNFVPVFVSRGVVQISAFVDEMIASLLGDGPVQALTYTQSLY
                     TLPVSLFGMSISAAELPAMSSAVGSEQEVASQLRGRLNAGLRQISFFVVPSVVAFLAF
                     GDVMVGALYQTGKFTRGDTLFVWGILAGSAIGLLPTTLGRLYASTFYALHDTRTPFRF
                     AVLHVVLAVALGYLSALHLPPLLGVERRWGAVGLTASAGIAGWIEFLLLRRKLNARVG
                     QTGLAWGFLSKLWAPAVACAAAGWGLKLLAGSLHPVLVAGLVLIPYGLLYFAATSLLG
                     LPESRAIFGRAARILGGGRR"
     gene            complement(2659..>2853)
                     /locus_tag="VD968_13620"
     CDS             complement(2659..>2853)
                     /locus_tag="VD968_13620"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYE15476.1"
                     /translation="EGESTAGLDLSGTLAEAAERAARAVERRKIAEALRAHDGNKTRA
                     AEELGVSYKTLLTKIKDYNL"
BASE COUNT          514 a          930 c          979 g          430 t
ORIGIN      
        1 ggcggcgtgc gcgcgcggcc aggccggcca ggccggtgcc gaacagtatc atcgtcatcg
       61 gctcggggat ggggttagcc ctcgccacgt cgctgtcgcc gttgttgaca tcctggaagc
      121 gggcgaaaat tgcctgcgct atctcgtcgg gcgtcaggcc cgagaagtcg cccgtgatgg
      181 tgaacgtggc gctcgcgccg ggcgcgatgc cgtcgttgac gctgccgccc ccgaaagtca
      241 ggttgccgtt agtcttattc gccagcacga ggtcgaaggt gctgacgaaa ttctgggcgc
      301 cggccgtggc gttcaggtcg aaagctatct cgtaattacc agtcgtgtcc tgaatgagcg
      361 tgtagttatt caggcggtcg ccgggcagcg cgaagccgat gttcgtgatc gtgccggttg
      421 cgcccggctc ggtggccgtg ttggtgatgg tgaaagtgaa cgtgttgccg accagcgtgt
      481 agttgctgat ggtcgcgtca actcccgtgc cgcctatgcc gacgagtgtg acggtgtcgg
      541 cgcgcgcgac cgagccgagg gctaaaacgg ccaggattac tgcgaaactg agtgaaaatt
      601 tacgaatcat ctttgtcacg tctcccctga gtgaattccg taaccgttaa gcctcctata
      661 cttccggctg ggggcgggag gcgaagccaa gagcacggac agaatcgctg cggcgagcgg
      721 cactctctaa gagtctctgt ctcctgccga agagagaggc acaatcacga ggattttcca
      781 gaaactgaca gcgtgggcga catttaacag cagaaccgcg gggccgtcaa cgagaaaatt
      841 ttgagcccgg agctacattc ccggcgcctt cagcgtcgcc cgcccccgag aatgcgcgcc
      901 gcccgcccga aaatcgcgcg cgattccggc aggcccagga gggacgtggc ggcgaaataa
      961 aggagcccgt aaggaatcag gacgagcccg gcgaccagga cgggatggag cgagcccgcc
     1021 agcagcttca gcccccaccc ggccgcggcg cacgcgaccg ccggcgccca cagcttcgac
     1081 aggaaccccc aggcgagccc cgtctgccct acccgcgcgt tgagcttgcg cctgagcagg
     1141 aggaactcta tccagcccgc gatacccgcc gaggcggtca gcccgacggc gccccagcgc
     1201 ctttcaacgc cgagcagcgg cggaaggtgg agggccgaga ggtagccgag cgcgacggcg
     1261 agaacgacgt ggagcacggc gaagcggaag ggcgtgcgcg tgtcgtgcag cgcgtagaag
     1321 gtcgaggcgt agagccggcc gagcgtcgtc ggcagcagcc ctattgccga gcccgcgagg
     1381 atgccccaga cgaagagcgt gtcgccgcga gtgaacttgc cggtctggta gagcgcgccc
     1441 accatcacgt cgccgaaggc gaggaaggcg acgaccgaag gcacgacgaa gaaggagatt
     1501 tgccggagcc ccgcgttcag ccgcccgcgg agctgcgagg cgacctcctg ctcgcttccg
     1561 acggcgctcg acatagcggg cagttccgcg gccgagatgg acatgccgaa gaggctgacg
     1621 gggagtgtgt agaggctctg cgtgtaggtg agcgcctgca cggggccgtc gccgagcagg
     1681 ctcgcgatca tctcgtcaac gaaggcgctt atctgcacga cgccgcggct gacgaagacg
     1741 gggacgaagt tgcggacgac cgtccgcacg tgctcgtttg cggcagcgag cgagagcctc
     1801 aggcccccga gcagccccaa aaccctcggt agctgaatcc cgaactggag cgcgctcccc
     1861 accacggagc cccatgccgt gtatcgcgcg accgcgcccc acacgcccag ctcgcccgag
     1921 ccgacgtggc gcacgggcgt gccggacagc acgagcgcca cgatgatcga ggcgttccag
     1981 ataatcggcg cggcgtagga gaggaagaaa cgcctgtggc tgttgagcac gcccaggcac
     2041 cacgcggaga gcacgaggag gcccgcgccg gggaagaata cgcggacgag ttggactgtc
     2101 aggtcgcgct tgccgccctc gaacccgggc gcgaatatgt ctgtcaggag cggcgcggcc
     2161 agcacgccgc cgagcacgag gagggacgtg acgagcgcga ggagcgagaa gacggcgccg
     2221 gcgacgcgct cggcctcctc gcgctcgccc ttcgccagca acttcgcata gacgggaatg
     2281 aaggaggccg acagagcccc ctcgccgaag acgttctgaa ggaagttggg gatacggaac
     2341 gcggcggcgt aggcgtcgcc cgcgactgag atgccgaagt agtaggcgaa gacgcgctgg
     2401 cgcagaagcc cgacgatgcg gctcagaagg atgcccgcgc cgactaacag ggcgccgcgc
     2461 ttcgtgctct cggccgacct cttctcctcg ggcgccgcgg acgtcctgtc ggcggggaac
     2521 tcggccgtca cgctcccgac cgtcaggttc gtctcgcccg ccacgacgga cgcctcctcg
     2581 tgcggcgccc cctgctttgc ttcccgcccg ccctcttcgt ctcgtctcat caagcgctca
     2641 cggcccggcc agtgctcttc acagattgta atccttgatc ttagtcagga gggtcttgta
     2701 gctgacgccc aactcctctg cggcgcgcgt cttgttgcca tcgtgggcgc gcagggcctc
     2761 ggctatcttt cggcgctcga cggcgcgggc ggcacgctcg gccgcctccg cgagcgtccc
     2821 cgacaggtcg agcccggctg tgctctcgcc ctc
//
LOCUS       DASPKR010000510        11537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_333589, whole genome shotgun sequence.
ACCESSION   DASPKR010000510 DASPKR010000000
VERSION     DASPKR010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11537)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11537
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333589"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1110
                     /locus_tag="VD968_13625"
     CDS             <1..1110
                     /locus_tag="VD968_13625"
                     /inference="COORDINATES: protein motif:HMM:NF016354.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF512 domain-containing protein"
                     /protein_id="HYE15477.1"
                     /translation="EVERAEGEDFGLQFENIVPRQCANECLFCFCKGNPPDARPALFF
                     RDEDVRLSFLYGNYTTLTSITEDEMRRVIEQRLTPQYVSVHATDLKVRAYLLGVDEAR
                     ADISEKMRRMTEAGIEIHAQVVLCPGINDGEVLGKTVEDLAAEHPRVRSVAIVPLGLT
                     RYNTDERLTPVTPEWCREVVRQVGAMQKGLKARLGTNFAFLGDEIYLRAGLDVPGRQH
                     YGDYPQIEDGVGMVRSFREDFARLLRKLSRNPPRGAARLHGTILTGALFAPVLGELVG
                     RLNARTGSRLKVLAVENKYFGPEIVVAGLVTGECVLAARGQLEGDFVVLPRTAHKSDE
                     PVMLDGTRLEDLEKQLGLPVRALDFEGFARMVSGD"
     gene            complement(1215..4820)
                     /locus_tag="VD968_13630"
     CDS             complement(1215..4820)
                     /locus_tag="VD968_13630"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE15478.1"
                     /translation="MSSFSLSLDGLSGAGRLPLVRRALAVACCVLLATALTLAQTAQG
                     TIQGVVRDQNGAVVVGATVEATNNATGDKRTATTNDEGFYTFPTLNVGTYTLSITGPG
                     FANATVRDVNVTVSFVQTQDVTLAPAGAQEVVTVASAGAETALNTTDQQLSTLITNEK
                     ILDLPLLSRDPNALLLLAPGAVASSSRLGGITVNGQRERNNNFLVDGIDNNDADVPGI
                     PGGISTPNIDATQEFRVITNNFTAEYGRNTGAIVNVATKSGTNDLHGAAYIYYRSDAF
                     AARDFFDITGKADPLQRRQYGGSIGGPIRKDRTFFFFNYERDDFDQGISVSRIVPTAA
                     ARAGVFDFSGAPSADDRALGVINIGNATNNRFGLPVNTNFQQLLNQIYPLPNTPGEAQ
                     PLPGIFERFRFSTQTNDLVNQISTRLDHRISEKHNLSGSFAFLDGTYEFCCESFPGLN
                     DAILSPQRTYRLSTNLVSTFSSNFINEFRFGGNRSELIFGGPGDAGVSPVIGNAVNAA
                     LTRSGANRESESFGGVNGSLTNLGTSAGFTGVFANFDTQFRYTGTTHFGDSVTWVKGD
                     HTLKFGGEARFVYSNGASNFFRGETLNLNFASNAGISVLRSNGGANLGFATGTRTNVQ
                     NLASMLYGLVYSQTQSQFFNKNGERVDEDYRGFRTREYDWFVQDSWKVRPNLTLSLGL
                     RWEFKGVPYEVNGQLSNLVIGDPSFPTPEGGFIFELVGKNSGGRFDLWEPDHNNFAPR
                     VGFAYSPDFREGFISKLTGGPGRTSIRGGYGVFYDRVFGNLFSNSTANPPFQFDFNST
                     PRFDCATCVTAADFVNASRLSNFANRPATGDPSPVIFDGAFIFPNLFPLPGNNQFQDK
                     FATPYTQSWNFGMQRQFAGNVLAEADYVGSKGTNLLRAIDGNMTSVERANQIFGTDAP
                     IDPFDTIGNYLNGSTNYAFFQSNLNLAIGHSTYHAGQFRLTKGFQNSRFGRGSIQGAY
                     TLSHSIDNAPDPLDAQTGERVFPRDSSGFAGGLGAERGNSGFDVRHRFVGNMVWEIPF
                     RSDNRLLSAAFSNWTMSGIWQWQSGSPYTVFGFTDSAGTALGQRADYLGGNLDARSSG
                     LRTQTGPDASLFATPCPVGDPDCEALSDQGRQGNTGRNAFYGPEFNNVDFSLIKRFPF
                     GEDGRYKFTVRMDAFNLFNKVNFGKPVNTIASANFGQSTDAFRARVIQFVGRFDF"
     gene            5501..9124
                     /locus_tag="VD968_13635"
     CDS             5501..9124
                     /locus_tag="VD968_13635"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE15479.1"
                     /translation="MRGFAAALALLLCALFGSEALAQTTTSEINGTVKDEQGAVIAGA
                     TVKLIDNSTNREVSTSSTGEGFFAFNNIPAGTYTVIAEHSGFQRLSIQDVKLNVGVPT
                     TLNIVLPPGNVAEVVTVSASDIAATINTTNAELSTTVQQQQINDLPLNGRNPLDLAGL
                     QAGVAAGASNRSATINGLRGTYSNLTWDGININDNFIRTDSLFGAAAPSVPGVAEFTL
                     VTQNSGPQDGLGVAQVKLVTPRGGTEYHGTLWEYHRNDAFDANSFFNNAAGLPKAKLI
                     RNQYGFGIGGPFVLPRPGEGGPTTFGKDKLFFYGYYEGTRERTDAEINRTVLTQAART
                     GQFTYVATNGTTQTVNLLALTGRSPDPLTTRLVGLTPLPNDLTGGDRRNFARFRFNSP
                     SGSDDDLWGFRFDVDANEANRFDVSFSRDVLVFPNDTFNDIGEPFPGLPGGGQSPIRT
                     RLAAAWNWVPTSTFNNELRGGFFLQKSKFFTDVVHDRGFRIAFPLISNPEQNFLEQGR
                     DVSTNEIINNAGKSWGNHFIRFGGNYRLVLVKPFNAGGTIPLATLGFNDIGTLNPLTT
                     GMFPGGISTTDFTNATSILAILTGSLTTVGETFNASSSSSGLLRGQMSRQDYRYWSLG
                     PYIGDTWRMRPNLTLNVGVRYEYVSVPKEENGLLVLPLGGMDALLTNAQIDSASGGRR
                     PLYNEDLNNFAPSVSFAWDPFGEGKTSLRAGYSISYVIDNNITTIDNAANRGGFTRSV
                     TLQGSAVTGTVSGGVPSVPVPTLTLPFTARSIFTTTDPGFAIFTIDPNLRTPYVQQWN
                     AGIQHEIFRDTVAEVRYVGNRGTKLTRGIDINQQRVFANGFLEDFRRAEFNFANCGGR
                     VNPTAAQCPGRQPLQLLPSFGAFALNQSTFLTAVRQGEVARALDFYITNKSFFFSDFG
                     GGAFGSTQLLSTYLPNPNAYVSDYVGNASWSTYNALQAEIRQRLRGGFDFQANYTFSK
                     AYTDFEGSQSNFAGLLDLTAGSALEKRRGINDLTHVFKANAGYELPFGNGKRWLSNGF
                     ASKVLGGMKLTGIFVAQSGRPISFLSARGTLNRVGRSGNNTANSTLTAQELQERTGLY
                     FHPTTGRPLMFDPSLIDLATGRANPAIFSNPGSGTVGSLHLTPVSGPGIWNLDMGLIK
                     RTQIKESLNVEFRMEAFNVFNKTNFFLSSTALNQNINSSTFGQITSTYDPRILQFAIK
                     VNF"
     gene            9262..10155
                     /locus_tag="VD968_13640"
     CDS             9262..10155
                     /locus_tag="VD968_13640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15480.1"
                     /translation="MINDRSKTPPAVALRLAAACLLALAPLAGATAAGRAPAAQKVTP
                     EEVIAKHLEAIGSAEARKPGRSRVISGGSLMDIRSGGRGQATGVALIASRGVKVLIKA
                     DFDSPSYPFERIGFDGKNLRAKPYAPGMRSPHAEFLLSHDATFSEGLIGGALSSAWPL
                     LNLAERKAKLEYAGTAKVNGRQAHKLRYVPHEGSELKIQLFFDAENFRHLRSEYERVI
                     PAAMGARPGQSASMREKRYLLVEDFSDFKAEGGLTLPHTYRIQYSVSEQAKPLNVDWT
                     FNLKNFTFDYAIEDKEFVTDN"
     gene            complement(10237..11259)
                     /locus_tag="VD968_13645"
     CDS             complement(10237..11259)
                     /locus_tag="VD968_13645"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15481.1"
                     /translation="MSTARSFLRPLSARLLLAPLGALLLLSPLAAPARAQRATRDLRG
                     SGGVQVNVKSFDQRDAITGAEVSLVAAGRGEATVSGFTDSSGRIAFVGVGGAYELIVK
                     KEGYETQRENIVIASAGRENFIVTLRRSKEGASPRASTVSARKAAVPEAAREAYDAGV
                     ASLQNDPAKSVEHFRRAINEFPEYAEAYMMLGYAELRRGQKGDAVAALSKAVELDPGL
                     AQAHLLLGKIYLDDRKPKEAEKPLRQSVSLDPQSSEAHLRLAHCLYVLGKPDEALRLA
                     RRSLELPGASPLTHLLISDIHLSRDEKKEALQALEKFEKADPQSPFMPRVRERIERLR
                     AEAANR"
BASE COUNT         1964 a         3764 c         3861 g         1948 t
ORIGIN      
        1 gaggtcgagc gcgccgaggg cgaggacttc ggcctacagt tcgagaacat cgtcccgcgc
       61 cagtgcgcca acgagtgcct gttctgcttc tgcaagggga acccccccga cgcccggccc
      121 gcactcttct tccgcgacga ggacgtgcgc ctctccttcc tctacggcaa ctacacgacg
      181 ctcacctcga ttacagagga cgagatgcgc cgcgtcatag agcagcgact gacgccgcag
      241 tacgtctcag tccacgcgac cgacctgaag gtgcgcgcct acctcctcgg cgtggacgag
      301 gcgcgcgcgg acatctccga gaagatgcgg cgcatgacgg aggccggcat cgagattcac
      361 gcgcaggtgg ttttgtgccc cggcattaac gacggcgagg ttctggggaa gacggtcgaa
      421 gacctcgcgg ccgagcaccc gagggtcagg agcgtagcga tagtccctct gggcctgacg
      481 cgctacaaca cggacgagcg cctgacgccc gtgacgcccg aatggtgccg ggaggtcgtc
      541 cggcaagtcg gcgcgatgca gaagggtttg aaggcgcggc tggggacgaa cttcgccttc
      601 ctcggcgacg agatttacct gcgcgccggg ctcgacgtgc cggggcggca gcattacggc
      661 gactacccgc agatagagga cggcgtcggc atggtgcgct cgttccgcga ggacttcgcg
      721 cggctgctca ggaagctttc gcgcaatccc ccgcgcggcg ccgcccgcct gcacggcacg
      781 atcctgacgg gcgcgctgtt cgcgccggtg ctcggtgagt tggtcgggcg cctgaacgcg
      841 cggacgggct cgcgccttaa agtgttggcg gtggagaaca aatacttcgg ccccgagata
      901 gtcgtggcgg ggctcgtgac gggcgagtgc gtgctcgcgg cgcgcggaca gttggagggc
      961 gacttcgtcg tgctcccgcg caccgcgcac aagtcggacg agcccgtcat gctcgacggc
     1021 acgcggctcg aagacctcga aaagcaactc ggcctgcccg ttcgcgctct cgacttcgag
     1081 ggcttcgcgc ggatggtgtc cggggactga gggcagggct tagacagcgc gggcgataaa
     1141 aagggcgccg aaactcacct gagtttcggc gcccttgagc tttgcggggc ttatgtcggc
     1201 cccgctgagt cggcctagaa gtcgaagcgg ccgacgaact gaatcacgcg ggcgcggaag
     1261 gcgtccgtgg actggccgaa gttagcgctg gcgatggtgt tcaccggctt gccgaagttg
     1321 accttgttga agagattgaa ggcgtccatg cggacggtga acttgtagcg gccgtcctct
     1381 ccgaacggga agcgcttgat gagagagaag tccacgttgt tgaactcggg gccgtagaag
     1441 gcgttgcggc ccgtgttgcc ctggcggccc tggtcgctga gcgcctcgca gtcggggtcg
     1501 ccgacggggc agggcgtcgc gaagagcgag gcgtccggcc cggtctgcgt gcgcaggccc
     1561 gaggagcgtg cgtcgaggtt gccgccgagg tagtcggccc tctggccgag cgcggtgccg
     1621 gccgagtctg tgaagccgaa gacggtatag gggctgcccg actgccactg ccagatgccc
     1681 gacatcgtcc agttggagaa ggcggcgctc aggaggcggt tgtcggagcg gaacggaatc
     1741 tcccacacca tgttgccgac gaagcggtgg cgcacgtcga agccggagtt gccgcgctcg
     1801 gcgcccaggc cgccggcgaa gcccgaggag tcgcgcggga agacgcgctc gcctgtctgc
     1861 gcgtcgagcg ggtcgggcgc gttgtcaatc gagtgcgaca gcgtgtaggc gccctgtatg
     1921 gagcccctgc cgaagcgcga gttctggaat cccttcgtca ggcggaactg gcccgcgtgg
     1981 taggtcgagt ggcctatcgc gaggttcagg ttcgactgga agaaggcgta gttggtcgag
     2041 ccgttcaggt agttgccgat ggtgtcgaac gggtcaatcg gagcgtccgt cccgaatatc
     2101 tggttggcac gctcgacgct cgtcatgttg ccgtcaatgg cgcgcagcag gttcgtgccc
     2161 ttcgagccga cgtagtcggc ctcggccagc acgttgccgg cgaactggcg ctgcatgccg
     2221 aagttccagc tctgcgtgta gggcgtggcg aacttgtcct ggaactggtt gttgcccggc
     2281 agcgggaaca ggttcgggaa gatgaacgcg ccgtcgaaga tgacggggct cgggtcgccg
     2341 gtggccggcc tgttcgcgaa gttcgacagg cgcgaggcgt tgacgaagtc ggccgccgtc
     2401 acgcaggtcg cgcagtcgaa gcgcggcgtg ctgttgaagt cgaactggaa cggcgggttg
     2461 gccgtcgagt tgctgaacag gttgccgaag acgcggtcgt agaagacgcc gtagccgccg
     2521 cgtatcgagg tgcggcccgg gccgccggtc agcttagata tgaagccctc gcggaagtcg
     2581 gggctgtagg cgaagccgac gcgcggggcg aagttgttgt ggtcgggctc ccagaggtcg
     2641 aagcggccgc ccgaattctt gcccaccagc tcgaagatga agccgccctc gggcgtcggg
     2701 aagctcgggt cgcctatgac gaggttcgag agctgcccgt tgacctcgta gggcacgccc
     2761 ttgaactccc agcgcaggcc gagcgacagc gtcaggttgg gcctgacctt ccacgagtcc
     2821 tgcacgaacc agtcgtactc gcgcgtgcgg aagccgcggt agtcctcgtc aacgcgctcg
     2881 ccgttcttgt tgaagaactg cgactgcgtc tgcgaataga cgaggccgta gagcatgctg
     2941 gccaggttct ggacgttggt gcgcgtcccc gtggcgaagc cgaggttcgc ccccccgttg
     3001 ctgcgcagga cgctgatgcc cgcgttgcta gcgaagttga ggttgagggt ctcgccgcgg
     3061 aagaagttgc tcgcgccgtt ggaatagacg aagcgggcct cgccgccgaa cttcagcgtg
     3121 tggtcgccct tcacccacgt gacgctgtcg ccgaagtggg tcgtccccgt gtagcggaac
     3181 tgcgtgtcga agttggcgaa gacgcccgtg aagccggccg aggtgccgag gttggtcagg
     3241 ctgccgttga cgccgccgaa gctctcgctc tcgcggttgg cgcccgagcg ggtgagcgcc
     3301 gcgttgacgg cgttgccgat gacggggctg acgcccgcgt cgccggggcc gccgaagatg
     3361 agctcggagc ggttgccgcc gaagcggaac tcgttgatga agttcgacga gaaggtcgag
     3421 accaggttcg tcgagaggcg gtaggtgcgc tgcgggctca ggatggcgtc gttaaggccg
     3481 gggaacgact cgcagcagaa ctcgtaggtg ccgtccagga aggcgaagct tcccgacagg
     3541 ttgtgcttct cgctgatgcg gtggtcgagc cgcgtcgaga tctggttgac gaggtcgttc
     3601 gtctgcgtcg agaagcggaa gcgctcgaat atgcccggca gcggttgcgc ctcgcccggc
     3661 gtgttcggga gcgggtaaat ctggttcagg agctgctgga agttggtgtt gacgggcagg
     3721 ccgaagcggt tgttggtggc gttgccgatg ttgatgacgc cgagcgccct gtcgtcggcg
     3781 gacggcgccc cgctgaagtc gaatacgccg gcgcgggcgg cggccgtcgg cacgatgcgg
     3841 gagaccgaga tgccctggtc gaagtcgtcg cgctcgtagt tgaagaagaa gaacgtcctg
     3901 tccttcctga tggggccgcc gattgagccg ccgtactggc ggcgctgcag ggggtcggcc
     3961 ttgcccgtga tgtcgaagaa gtcgcgggcg gcgaaggcgt cggagcggta gtagatgtag
     4021 gccgcgccgt gcaggtcgtt cgtgccggac ttggtggcga cgttgacgat ggcgccggtg
     4081 ttgcggccgt actcggccgt gaagttgttg gtgatgacgc ggaactcctg cgtcgcgtca
     4141 atgttgggcg tcgagatgcc gccggggatg ccgggcacgt cggcgtcgtt gttgtctatg
     4201 ccgtcaacga ggaagttgtt gttgcgctcg cgctgcccgt tgacggtgat gccgcccagg
     4261 cggctcgaag aggcgaccgc gccgggcgcg agcagcagca gcgcgttcgg gtcgcgcgac
     4321 agcagcggaa ggtcgagaat cttctcgttg gtgatgagcg tcgagagctg ctggtcggtc
     4381 gtgttaaggg cggtctcggc gccggccgag gcgaccgtga cgacctcctg cgcgcccgcc
     4441 ggggcgagcg tcacgtcctg ggtctggacg aacgacactg tgacgttcac gtcgcggacg
     4501 gtggcgttgg cgaagccagg ccccgtgatg ctcagggtgt aggtgccgac gttgagggtc
     4561 gggaaggtgt agaagccctc gtcgttggtg gtcgccgtgc gcttgtcgcc cgtggcgttg
     4621 ttcgtcgcct cgacggtcgc gccgacgacg acggcgccgt tctggtctct gacgacgccc
     4681 tggatcgttc cctgcgccgt ctgggcgagg gtgagcgccg tggctaagag cacacagcag
     4741 gcgacggcca gagccctgcg cacgagcggc aaacgcccgg cgccggacag gccgtctagg
     4801 gacagactga atgaactcat ctaactcctc cttaatcttt ccatgaaaga cgcgcggcac
     4861 gccggggggg cgcgccacgc ggacgaatgt aagtaagtgg gctactccgt cgccggcgtg
     4921 cgtgcaaaaa ttgttcccgt atggaggcag cgcgggcgcg gtattttccc ggcctttcgt
     4981 ggcctcaagc gctcgcttcg ttggaagata ttcagatatg tgaactgcgc gtccgaattc
     5041 ctgaagatgt tcagttattt ataaaaacat ctaattttat ggccgcccga atcgccttaa
     5101 cagtcgcgcc gctcgtgact gcgccgggcc gcaggcagcc cgaatatatt cgggcgcggg
     5161 gtgggagcgc gcgggcgtcg agctgcgccc tcacgcgcga ggctcgcgcg cggccgaagg
     5221 cgtgtctatg ggctagggca gttgggtgcg cgtgccggga gttgcccgcc acacttcata
     5281 tttttgtaaa tatctacgaa aacctaaatg cgaacggccc ccgctcaaaa tcgggttcgg
     5341 ggttaagtcg aaactactca aacagttatt cccggctacc attcgggtat gcgttttgct
     5401 ggattaaaat ccaggcattc tgcgccagtt tgttgtcaac cccactaaaa cctaatcgga
     5461 catcagagga gggaaaatga ataagtttag aggcttctca gtgagaggct ttgcggcagc
     5521 acttgccctg ctgctgtgcg cccttttcgg gtcggaagct ctagctcaaa ccacgacctc
     5581 agagattaac ggcaccgtca aggacgaaca gggcgccgtc atcgcagggg ccaccgttaa
     5641 gctgattgat aactcgacca accgcgaggt cagcaccagt tcgacgggcg aaggtttttt
     5701 cgctttcaac aacatcccgg caggcaccta cacggtcatc gccgagcaca gcggcttcca
     5761 gcggctctcg atccaggacg ttaaactgaa cgtcggcgtc ccgactacgc tgaacatcgt
     5821 actgccgccg ggcaacgtgg ccgaggttgt gaccgtctcg gcctcggaca tcgccgcgac
     5881 tattaacacg acgaacgccg agctctcgac gaccgttcag cagcagcaga tcaacgacct
     5941 gcccctgaac ggcaggaacc cgctcgacct cgcgggcctt caggccggcg tcgccgcggg
     6001 cgcctctaac cgctcggcca ccatcaacgg cctccgcggc acctactcga acctgacctg
     6061 ggacggcatc aatatcaacg acaacttcat acgcaccgac agcctcttcg gcgccgcggc
     6121 gcccagcgtg cccggcgtcg ccgagttcac gctggtgacg cagaactcgg ggccgcagga
     6181 cggcctcggc gtcgcgcagg tgaagctcgt cacgccgcgc ggcggcaccg agtaccacgg
     6241 cacgctctgg gagtaccacc gcaacgacgc gttcgacgcc aactcgttct tcaacaacgc
     6301 ggccgggctg cccaaggcta agctcatccg caaccagtac ggcttcggca tcggcggccc
     6361 gttcgtcctc ccgaggcccg gcgagggcgg ccccaccacc ttcggcaagg acaagctctt
     6421 cttctacggc tactacgagg ggacgcgcga gcgcacggac gccgagatca accgcaccgt
     6481 gctgacgcag gcggcccgca cggggcagtt cacctacgtc gcgaccaacg ggacgacgca
     6541 gaccgtcaac ctgctcgccc tgaccgggcg ctcgcccgac ccgctcacga cgcggctcgt
     6601 cggcctcacg ccgctgccga acgacctgac cggcggcgac aggcgcaact tcgcgcgctt
     6661 ccgcttcaac agcccttcgg gcagtgacga cgacctctgg ggcttccgct tcgacgtgga
     6721 cgccaacgag gccaaccgct tcgacgtctc cttcagccgc gacgtgctcg tcttcccgaa
     6781 cgacaccttc aacgacatcg gcgagccgtt ccccggcctg ccgggcggcg gccagagccc
     6841 gatccgcacg cgccttgcgg cggcctggaa ctgggtgccg acctcgacct tcaacaacga
     6901 gctgcgcggc ggcttcttcc tccagaagtc gaagttcttc accgacgtgg tgcacgaccg
     6961 cggcttccgc atcgccttcc cgctcatcag caaccccgag cagaacttcc tcgagcaggg
     7021 ccgcgacgtt agcacgaacg agatcatcaa caacgccggg aagtcctggg gcaaccactt
     7081 catacgcttc ggcggcaact accgcctcgt cctcgtcaag ccgttcaacg ccggcggcac
     7141 catcccgctc gccacgctcg gcttcaacga cataggcacg ctcaacccgc tcacgaccgg
     7201 catgttcccg ggcggcatct cgaccaccga cttcaccaac gcgaccagca tcctcgccat
     7261 cctcacgggg tcgctcacga ccgtgggcga gaccttcaac gccagcagct ccagctccgg
     7321 cctgctccgc ggccagatga gccgccagga ctaccgctac tggagcctcg ggccttacat
     7381 cggcgacacc tggcgcatgc gccccaacct gaccctcaac gtcggggtgc gctacgagta
     7441 cgtgtcggtg ccgaaggagg agaacggcct gctcgttctg cccttgggcg gcatggatgc
     7501 gctcctgacc aacgcgcaga ttgactccgc ctcgggcggc cgccgcccgc tctacaacga
     7561 agacttgaac aacttcgcgc cgagcgtcag cttcgcctgg gacccgttcg gcgagggcaa
     7621 gacatcgctg cgcgccggct acagcatctc ctacgtgatt gacaacaaca tcacgaccat
     7681 tgacaacgcc gccaaccgcg gcggcttcac gaggtcggtg acgttgcagg gttccgccgt
     7741 gacgggcact gtgagcggcg gcgtcccgtc cgtccccgtg ccgacgctga cgctgccctt
     7801 cacggcacgc agtatcttca cgacgaccga ccccgggttc gccatcttca cgattgaccc
     7861 gaacctgcgc acgccctacg tccagcagtg gaacgccggc atccagcacg agatcttccg
     7921 cgacacggtg gccgaggtgc gctacgtcgg taaccgcggc acgaagctga cgcgcggcat
     7981 agacatcaac cagcagcgcg tcttcgccaa cgggttcctc gaggacttcc ggcgcgccga
     8041 gttcaacttc gccaactgcg gcgggcgcgt caacccgacg gcggcgcagt gccccggccg
     8101 ccagccccta cagctcctgc cctccttcgg cgccttcgcg ctgaaccagt ccaccttcct
     8161 gacggccgtc cggcagggcg aggtggcgag ggcgctggac ttctacatca cgaacaagtc
     8221 cttcttcttc tcggacttcg gcggcggggc cttcggctcg acgcagttgc tgagcaccta
     8281 cctgccgaac ccgaacgcct acgtgtccga ctacgtcggc aacgcgtcgt ggtcaaccta
     8341 caacgcgctg caggccgaga tacgccagcg cctgaggggc ggcttcgact tccaggccaa
     8401 ctacaccttc agcaaggcct atacggactt cgagggcagc cagtcgaact tcgccggcct
     8461 gctcgacctg acggcgggca gcgccctgga gaagcggcgc ggcatcaacg acctgacgca
     8521 cgtcttcaag gccaacgccg gctacgaact cccgttcggc aacggcaagc gctggctcag
     8581 caacggcttc gccagcaagg tcctcggcgg catgaagctg acgggcatct tcgtagccca
     8641 gtcgggccgc ccgatctcct tcctctccgc ccgcgggacg ctcaaccgag tcgggcgctc
     8701 cggcaataac acagccaact cgaccctgac ggctcaggag cttcaggagc gaacgggcct
     8761 ctacttccac ccgacgacgg gccggccgct gatgttcgac ccgagcctca ttgacctcgc
     8821 gacgggtcgc gccaacccgg ccatcttctc gaacccgggg tcgggtaccg tcggcagcct
     8881 tcacctgacg cccgtcagcg gccccggaat ctggaacctc gacatggggc tgatcaagcg
     8941 gacgcagatc aaggagtcgc tcaacgttga gttccgcatg gaggcgttca acgtcttcaa
     9001 caagacgaac ttcttcctca gcagcacggc gctcaaccag aacatcaaca gctcgacctt
     9061 cgggcaaata acctcgacct acgacccgcg catcctgcag ttcgcgatca aggtcaactt
     9121 ctaaacacga gaggggagcg ggtcttgcgg cccgctcccc cgcccccgac actagccggc
     9181 gacggctccc cgcggggagc cgtcgccagt tttttgaacg ccgcgcactt tgaagtgctg
     9241 cgagggagga agcaatcggg aatgataaac gaccgctcta aaaccccgcc ggcagtcgca
     9301 ctcaggctgg ccgcggcttg cctgctggcc ctggcgcccc tcgcgggcgc gaccgccgcc
     9361 ggccgcgcgc cggccgccca gaaggtgacg ccggaggagg tcatcgcgaa gcacctggag
     9421 gccatcggct cggccgaggc gcggaaaccc ggccgcagcc gcgtcatatc gggcgggtct
     9481 ctgatggaca tacgttccgg cgggcgcggg caggcgacgg gcgtggccct catagcctcc
     9541 cgcggcgtga aggtgctcat caaggccgac ttcgactcgc ccagctaccc gttcgagagg
     9601 atagggttcg acggcaagaa tctccgcgcg aagccttacg cgccggggat gcggtcgccc
     9661 cacgccgaat tcttacttag ccacgacgcg accttcagcg aggggctcat cggcggcgcg
     9721 ctctcgtcgg cgtggccgct gctgaatctg gccgagcgta aggctaagct ggagtacgcg
     9781 ggcacggcga aggtgaacgg ccgacaggcg cacaagctca ggtacgtccc gcacgaaggc
     9841 tcggagctta agattcagct cttcttcgac gcggagaact tccgccacct gcgctccgag
     9901 tacgagcgcg tcatcccggc cgcgatgggc gcgaggccgg ggcagtcggc cagcatgagg
     9961 gagaagcgat acctgctggt cgaggacttc tccgacttca aggcggaagg cggcctgacc
    10021 ctgccgcaca cctacaggat tcagtactcg gtctccgaac aggccaagcc gctgaacgtt
    10081 gactggacgt tcaacctgaa aaacttcacc ttcgattacg cgattgagga caaggagttc
    10141 gtcaccgaca actaaggcgc tttcgggccg gtcgcgcctt cgacggcggg gccttcaaga
    10201 aggggccgcg ggcgggagcc tcgcggcccc gtcgccttag cggttcgcgg cttcggcgcg
    10261 caggcgctca atccgctccc gcacgcgcgg catgaacggg ctctgcgggt cggccttctc
    10321 gaacttctcg agcgcttgca gcgcctcctt cttctcgtca cggctcaggt ggatgtccga
    10381 gatgagaagg tgcgtgagcg gcgaggcgcc cgggagctcg agggagcggc gcgcgaggcg
    10441 cagcgcctcg tcgggcttgc ccagaacgta gaggcagtgc gcgagccgga ggtgcgcctc
    10501 cgacgactgc gggtcgaggc tgacgctctg gcggagcggc ttttcggcct ccttcggctt
    10561 ccggtcgtcg aggtaaatct tgccgagtag caggtgggcc tgcgcgagcc ccgggtctag
    10621 ctcgaccgcc ttggagaggg cggcgacggc gtcgcccttc tggccccgcc gcaactcggc
    10681 gtagccgagc atcatgtagg cttcggcgta ctcggggaac tcgttgatgg cccggcggaa
    10741 gtgctcgacg ctcttggccg ggtcgttttg caggctcgcg acgcccgcgt cgtaagcctc
    10801 gcgcgccgcc tcgggcacgg cggccttgcg ggccgagacg gtcgaagcgc gcggcgacgc
    10861 gccctcctta ctccggcgca gcgtgacgat gaaattctcg cgcccggcgg aggctatcac
    10921 gatgttctct ctctgcgtct cgtaaccctc cttcttcacg atgagctcgt aggcgccgcc
    10981 gacgccgacg aacgcgatgc ggcccgacga gtcggtgaag ccgctcacgg tggcctcccc
    11041 ccggcccgcg gccaccagcg agacctccgc gccggtgatt gcgtcccgct ggtcgaaact
    11101 cttgacgttg acctgcacgc ctcccgaccc gcgcaagtcg cgcgtagcgc gttgggcgcg
    11161 cgctggggcc gccaggggcg agagaaggag gagggcgccg agcggcgcga ggaggagtcg
    11221 ggctgaaagg gggcgaagga aagatcgggc tgtgctcatc attaaatacc tcttctgggg
    11281 tagcggattc taccacaggc ggtcgggcgg ccccctacaa gtttccggcc cgcacggaaa
    11341 ggggggcggc cttcgccggg ccgcccccct ttacttttcg cgcgtcggaa acttgtaggg
    11401 ggccgcccgc ccgcctgtgg tagaatccgc tgccccagaa gaggtattta atgatgagca
    11461 cagcccgatc tttccttcgc cccctttcag cccgactcct cctcgcgccg ctcggcgccc
    11521 tcctccttct ctcgccc
//
LOCUS       DASPKR010000511         5444 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1755971, whole genome shotgun sequence.
ACCESSION   DASPKR010000511 DASPKR010000000
VERSION     DASPKR010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5444)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5444)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5444
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1755971"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..281
                     /locus_tag="VD968_13650"
     CDS             <1..281
                     /locus_tag="VD968_13650"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15482.1"
                     /translation="IIALKPADSAVVARAHNGRGQAFVGLKKYERAAAEYREAIRRDP
                     KQPGYYLNLGTTYLAMGKKAQAQQVYNTLLTLDRQKAQQLYAEINKMK"
     gene            308..700
                     /locus_tag="VD968_13655"
     CDS             308..700
                     /locus_tag="VD968_13655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15483.1"
                     /translation="MPSDITSPSPAPVAQHSFACAKCGHEAGLVQLFGPAPAAEIVRD
                     SFTSHSTFRAGPENFDRLRAAVTAGDAQALYEFDLEAAPFYCPDCRACYCGEHWARWN
                     VFDDEEGFTWHDSIRGRCPHGHERMLED"
     gene            763..2124
                     /locus_tag="VD968_13660"
     CDS             763..2124
                     /locus_tag="VD968_13660"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HYE15484.1"
                     /translation="MRAKPAAIFLVLLPFAFAVLPRLAGAQAGARPEQPPRLLTLREQ
                     QSVREGWLRKRLDTMLLPMMRRHKIEMWVVVNEEFHPDPVVHHVAPPIPYQGRRDFFI
                     FADRGADRLERIALVRYTEERLKDFFEVLSPPGRETAATLRRIVDERRPRSIALNTGG
                     ARGATGGLTHDAYNFLAETLGPEHASKFVPAAPLIVEYTDTRLPEELEHYRAAVAVTD
                     LLTRRALSNEVVRPGKTTVGDVRWWLLHEVNRLGLDVWFQPDLRVQRRDARPGMAQQF
                     LAVAPESLVIERGDLLHVDFGLNYMGLSTDWQKHAYVLREGERDAPEGLRRALANTNR
                     LQDSVFEHARPGRTGAEVYDAVMADMKRAGIEAMIYSHSVGAQGHGLGASIDFRRPAA
                     GAPEEPPLREGSYTAIELSTSTPVPEWGGRKVTVMAEDDAYLTAEGFKWFRPRQTKLY
                     LIK"
     gene            2234..3643
                     /gene="lysC"
                     /locus_tag="VD968_13665"
     CDS             2234..3643
                     /gene="lysC"
                     /locus_tag="VD968_13665"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HYE15485.1"
                     /translation="MSSLQPTVMKFGGTSVGDALAFVRAADLVKRNSACRPVVVVSAM
                     CGFTDALIECVRAAEAGDAGRAALTLEEHFGRHTEVARAALPLAAASEFAPRVAESRE
                     EIRATLREVSEGKGPRERLQDSVVSHGERLSAELLAAVLRARGARARCVDARRCVMTD
                     DEHGRATPLKDETERCTREELEPLLEAGEVPVLGGYIASSAATGETTTLGRGSSDYTA
                     ALVGAALGAREIQIWTDVAGVMTADPRIVPGARTIPRLSYAEAAELAYFGAKVLHPKT
                     ILPAVVRNIPVRILNSRDARAPGTVVYFDAEMTPRTVKAIACKPGVHIMHITSARMLG
                     AYGFLRAIFEVFERHRTEVDIVATSEVSVSLSIEGTSALEAIIEDLKPVAAVRVEPGR
                     AIICVVGEGLRNTPGIAGRVFSTIKDINVLLISQGASNINLTFVVEERDMVEVVRRLH
                     AALFEVQTAELLAHIGGGR"
     gene            3649..4671
                     /locus_tag="VD968_13670"
     CDS             3649..4671
                     /locus_tag="VD968_13670"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYE15486.1"
                     /translation="MNLFGLTRRLIDIPSVSGEEGEVGRFLASYLESLGYTVELQEVT
                     AGRANVLARAGARARVVLSTHMDTVPPFIPSGEDEAHITGRGACDAKGIIAAQIAAAE
                     RLRAEGSGEVGLLFTVDEEMGSLGARRANEHAWAAACEFLINGEPTRNRLAVGSKGSL
                     RVRLSTEGRAAHSAYPEQGESAIEKLLDVLADVRACTWPRDEFFGETTCNIGTLSGGT
                     RPNVVPAEASAELQIRLVTDSATVREALERVAAGRARVEYLSAAEPVRMLAVGGFEQE
                     VVRFTTDIPYLTNWGVPLLLGPGSILDAHTPHERVSKRELEEAAELYARLARTLLTDG
                     RREGAG"
     gene            4668..5387
                     /locus_tag="VD968_13675"
     CDS             4668..5387
                     /locus_tag="VD968_13675"
                     /inference="COORDINATES: protein motif:HMM:NF017024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate reductase C-terminal
                     domain-containing protein"
                     /protein_id="HYE15487.1"
                     /translation="MKLALIGHGAMGRLVEARARDEGHEVATILTSRESALGAEELAE
                     ILAGHDAAIDFTVADAVARNAEACALAGVPLVEGTTGWHARLEEVRGVVERRGGALIY
                     GANFSVGVNLFYRIVAHAAELFAAFDYEAFIEEAHHSRKRDAPSGTALRLRDIVTQAS
                     GRELTVASTRAGHIPGTHRVGFDSAADQILLTHTARSREGFAAGALVAAQWVQGRRGV
                     FEFSETLGEILKASAEGGVPK"
BASE COUNT          883 a         1873 c         1874 g          814 t
ORIGIN      
        1 acatcatcgc tctgaagccg gcagactcgg cggtcgtggc tcgggcacac aacggcagag
       61 gccaggcgtt tgtggggctg aagaaatacg agagggccgc cgccgaatac cgcgaagcta
      121 tccgccgcga cccgaaacag ccggggtact acttgaatct tggcacaacg tatctggcga
      181 tggggaagaa agctcaggcg caacaggttt acaataccct tctaacgttg gacaggcaga
      241 aggcgcagca gctctacgcg gagatcaaca agatgaagta acgcggccct gccgcgaatc
      301 accgactatg ccctccgaca ttacttcccc ttcgccggct cccgtcgcgc agcacagctt
      361 cgcctgcgcc aagtgcggcc acgaggcggg gctcgtacaa ctcttcggcc ccgcccccgc
      421 cgccgagatc gtccgcgaca gctttacgag ccactccact ttccgagccg gcccggagaa
      481 tttcgaccgg ctccgcgccg ccgttaccgc cggcgacgcc caggcgcttt acgagttcga
      541 cttggaagcc gcgcccttct actgccccga ctgccgcgcc tgctactgcg gcgaacactg
      601 ggcgcgttgg aacgttttcg acgacgagga gggcttcacc tggcacgact ccatccgggg
      661 ccgctgcccg cacggccacg agcgcatgct tgaggactga accacatcgc cggccccggt
      721 tctgctatgc ttgcgggcgg acttgcccgt ggagaacaga agatgagagc aaagccggcc
      781 gcaatatttt tagtcttact gcctttcgcc ttcgccgtgc tgccgcgact cgccggggcg
      841 caggcgggcg cgcggccgga gcagccgccg cggctactca ccctgcgcga gcagcagtcg
      901 gtgcgcgagg ggtggctgcg gaagcggctc gacacgatgt tgctgccgat gatgcggcgg
      961 cacaagatag agatgtgggt cgtcgtcaac gaggagttcc accccgaccc ggtcgtccac
     1021 cacgtcgcgc cgcccatccc ctaccagggc cgcagggact tcttcatctt cgccgaccgg
     1081 ggcgccgaca ggctcgaacg tatcgccctc gtccgctaca ccgaagagcg ccttaaagac
     1141 ttcttcgaag ttctgagccc gccggggcgc gagacggccg cgaccctgcg gcgcatagtg
     1201 gacgagcgca ggccccggtc aatcgcgctc aacaccggcg gcgcgcgcgg cgcgacgggc
     1261 ggcctcacgc acgacgccta caacttcctc gccgagacgc tcggccccga gcacgcctcg
     1321 aagttcgtcc ccgccgctcc gctcatagtc gagtacaccg acacgcgcct gcccgaagag
     1381 cttgagcact accgcgccgc cgtcgccgtc acagaccttc tcacgcgccg cgcgctctcg
     1441 aacgaagtcg tcaggcccgg caaaacgacc gtgggcgacg tgcgctggtg gctcctgcac
     1501 gaggtcaacc ggctcggcct cgacgtctgg ttccagcccg acctgcgtgt gcagcggcgc
     1561 gacgcgcggc ccggcatggc gcagcagttc ctcgcggtcg cgcccgagtc gctcgtcatc
     1621 gagcggggcg acctgctcca cgttgacttc ggcctcaact acatgggact gagcaccgac
     1681 tggcagaagc acgcatacgt gctgcgcgag ggcgagcgcg acgcgcccga gggcctccga
     1741 cgggcgctcg ccaacacgaa ccggctgcaa gactccgtct tcgagcacgc gcggcccggc
     1801 cgaaccggcg ccgaagtcta tgacgcggtc atggccgaca tgaagcgcgc gggcatagag
     1861 gcgatgatct actctcactc ggtcggcgcg cagggccacg gcctcggcgc ctcgattgac
     1921 ttcagaaggc ccgcggcggg cgcgcccgaa gagccgcccc tgcgcgaggg ctcctacacg
     1981 gcgatagagc tgagcacctc gactcccgtc cccgagtggg gcggccggaa ggtgaccgtc
     2041 atggccgagg acgacgcata cctcaccgcc gaggggttca agtggttccg cccccgccag
     2101 acgaaactct acctgataaa gtagtggcgg cggctgacgg ccgaaggctt ttggtgtatc
     2161 cttccggctg aatttatagg cctcataaga agggttgatt ggtcggcgct cgcgcgtcgg
     2221 cgcaggcggg cggatgtctt ctttacagcc tacggtgatg aagttcggcg gcacgtccgt
     2281 gggtgacgcg ctggccttcg tgcgcgcggc cgacctggtc aagcgcaact cggcgtgccg
     2341 ccccgtcgtg gtcgtctccg ccatgtgcgg cttcacggac gccctcatcg agtgcgtgcg
     2401 cgcggccgag gctggcgacg ccgggcgggc tgccctcacg ctcgaagagc acttcggccg
     2461 tcacacggaa gtcgcgcgcg cggcgctccc gctcgcggcc gcctcggagt tcgcgccgcg
     2521 cgtcgccgag tcgcgcgagg aaatcagggc gacgcttcga gaggtgtctg aggggaaggg
     2581 gccgcgcgag cggctgcaag actcggtggt ctcgcacggc gagcgcctgt ccgccgagct
     2641 tctggccgcg gtgctgcgcg ctcggggcgc gcgggctcgg tgcgtggacg cgcggcgctg
     2701 cgtcatgacg gacgacgagc acggccgcgc caccccccta aaggacgaga ccgagcggtg
     2761 cacgcgcgag gagttagagc ctctactcga agcaggcgag gttcccgtgc tcggcggcta
     2821 catagcctcg tcggccgcga ctggagagac gacgacgctc gggcgcggca gctccgacta
     2881 cacggccgcc ctcgtcgggg cggcgctcgg cgcccgcgag attcaaatct ggactgacgt
     2941 tgcgggcgtg atgaccgccg acccgcgcat cgtccccggg gcgcgaacca tcccgcgcct
     3001 ctcctacgcc gaggcggcag agctcgccta cttcggcgcg aaagtcctac accccaagac
     3061 catcctgccg gccgtcgtgc gcaacatccc tgtccgcata ctgaactcgc gcgacgcgcg
     3121 cgcgcccggc acggtcgttt acttcgacgc cgagatgaca cccagaacgg tcaaggccat
     3181 cgcctgcaag ccgggcgtcc acatcatgca catcacgagc gcgcgcatgc tcggcgccta
     3241 cggcttcctg cgcgccatct tcgaggtctt cgagcgccac cgcacggagg ttgacatagt
     3301 cgccacctcg gaggtcagcg tctcgctctc gattgagggc acgagcgcgc tcgaagcgat
     3361 aatcgaagac ctgaagccgg tcgcggccgt cagggtcgag ccggggcgcg ccatcatctg
     3421 cgtcgtgggc gagggcctgc ggaacacgcc ggggatagcc ggccgcgtct tctcgaccat
     3481 caaggacata aacgtcctgc tcatctcgca gggcgcgtcg aacatcaacc tgaccttcgt
     3541 cgtcgaggag cgcgacatgg tcgaagtcgt ccggcgcctc cacgcggccc tcttcgaggt
     3601 tcagacggcc gagctcctcg cgcacatcgg cggcgggcgt tgaagggcat gaacctgttc
     3661 gggctgacgc gccggctgat tgacatcccc tcggtctcgg gcgaggaggg cgaggtcggg
     3721 cgcttcctcg cctcgtatct tgagagcctg ggctacacgg tcgagcttca ggaggtgacg
     3781 gcggggcgcg cgaacgtcct ggcgagggcg ggcgcccgcg cgcgcgtagt gctctcgact
     3841 cacatggaca cggtgccgcc cttcatcccg tcgggcgagg acgaggcgca cataacgggg
     3901 cgcggcgcgt gcgacgcgaa gggcatcatc gcggcgcaga ttgcggcggc cgagcgcctg
     3961 cgcgccgaag gctcaggcga ggtcgggctg ctcttcacgg ttgacgagga gatggggagc
     4021 ctcggcgcgc gccgagccaa cgagcacgcg tgggccgccg cgtgcgagtt cctgattaac
     4081 ggcgagccga cgcgaaaccg cctcgccgtg ggctcgaagg gctcgctccg cgttaggctc
     4141 tcgaccgagg ggcgcgcggc gcactcggcc tacccggagc agggcgagtc ggcgatagag
     4201 aagctgcttg acgtgctcgc cgacgtgcgc gcatgcactt ggccgcgcga cgagttcttc
     4261 ggcgagacga cctgcaacat cgggaccctt tcgggcggga cgaggcccaa cgtcgtcccg
     4321 gccgaggcga gcgcagagct gcaaatccgc ctcgtcacgg acagcgcgac tgtcagggag
     4381 gcgctcgaaa gggtcgcggc gggccgcgcg cgcgtcgagt atctttccgc ggcggagccc
     4441 gtccgcatgc tcgcggtcgg tgggttcgag caggaggtcg tgcgcttcac gaccgatata
     4501 ccctacttaa ccaactgggg cgtgcctctg ctgctcggcc ccggctcgat actcgacgcg
     4561 cacaccccgc acgagcgcgt ctcgaagcgc gagctcgaag aggccgccga gctttacgcg
     4621 cggctcgcgc gcacgctgct aactgacggg cgacgggagg gggccggatg aagctggctt
     4681 tgataggcca cggggcgatg gggcggctgg tggaggcgcg cgcgcgagac gaaggccacg
     4741 aggtcgcgac cattctgacc tcgcgcgagt cggcgctcgg cgcggaggag ctggccgaaa
     4801 tcctcgccgg ccacgacgcg gcgattgact tcaccgtggc cgacgccgta gcgcgcaacg
     4861 ccgaggcgtg cgcgctcgcg ggggtgcctc tcgtcgaggg gactacgggt tggcacgcgc
     4921 gcctcgaaga agtccgcggg gtggtggagc gccgcggcgg cgcgctcatc tacggcgcga
     4981 acttctccgt cggcgtcaac ctcttctacc gcatcgtcgc gcacgcggca gagcttttcg
     5041 ccgccttcga ctacgaagcc ttcatcgagg aggcgcacca ctcgcgcaag cgcgacgccc
     5101 cctccgggac tgcgctgcgc ttacgcgaca tcgtgacgca agcttcgggg cgtgagctta
     5161 cggtcgcctc gacgcgggcc ggccacatcc ccggcacgca ccgcgtcggc ttcgactcgg
     5221 cggccgacca gattttgctc acgcacacgg cgcgctcgcg cgaggggttc gcggccggcg
     5281 cgctcgtcgc cgcccaatgg gtgcagggca ggcgcggcgt gttcgagttc tccgagacgc
     5341 tcggcgagat actgaaggcg agcgcggaag gcggggtgcc gaagtgatga ataaaaaaaa
     5401 ggacgtcggg tggatgcgcg gctgcgcgac ggcgctggtg actc
//
LOCUS       DASPKR010000512         6256 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_720001, whole genome shotgun sequence.
ACCESSION   DASPKR010000512 DASPKR010000000
VERSION     DASPKR010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6256)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6256)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6256
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_720001"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1531)
                     /locus_tag="VD968_13680"
     CDS             complement(<1..1531)
                     /locus_tag="VD968_13680"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE15488.1"
                     /translation="MLRNVPPVLARLAALVVLCSALAPAAARAQSQATTGDIEGRVLD
                     PNGAVVTNATVTATNKATGFEKSATTDEDGNYRLILLPPGTYAVRATASGFSAAESSA
                     VTVTVGSKTALDMSLAVGGASVSVTVTSEAPTVETTRTSVATTINQQAIENLPINGRN
                     FQDFATLSPAVVRDPRGGDLSVGGQRGTLNSLQVDGVDNNNTFFGQALGRGGVRPPYQ
                     FSEESVQEFQVNQNGFSAEFGRAGGAVINVVTKSGTNAFHGGLFEYFRDESLNANDPV
                     TKANQARAGRPNKRPPSKIHQFGGRVGGPIVENRAFFFFTYDGQRADVPQVLDVPNIA
                     TAPLAARNVLLPKLDTYQVGRNQDVFLGKADISLNTANQLTLRYNHQGFTGRNNENNG
                     PLSAEEHSGDSIVKSDTFSGTLASTLTQAVVNEFRFQFARDKEPGEANSDQPEAVIGT
                     GAGTNLSIGRNNFSPRETTIKRVQFIDNLSYVRGRSTFKFGADLNFDRILNFFPGLFS
                     GS"
     gene            complement(1655..3274)
                     /locus_tag="VD968_13685"
     CDS             complement(1655..3274)
                     /locus_tag="VD968_13685"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE15489.1"
                     /translation="MTDAAELFPALFGTPEALFRKYIEEAVARTAENISPLYRLDSFD
                     WAVLALYFAVLGVLALYGAYRVKQVVDFWRYRRVAPRPKAFFGEEELPRVTVQLPLFN
                     ELYVVERLLAAVTRLDYPRHLLEIQVLDDSTDETREAARAAVERHRAEGFRVSYIHRD
                     DRTGFKAGALGNGLKTAAGELVAIFDADFVPRPDALRKLVHFFTDPLVGCAQMRWSHI
                     NGSYNLLTRLQTILLDGHFVVEQTVRNRTGGFFNFNGTAGVWRRRAIELSGGWQHDTL
                     TEDTDLSFRAQLMGWRFVYLLDEDAPSEVPVEMNAFKAQQRRWAKGVTEVAVKLYPRI
                     LRARLPARVKLEMFFRLTGNISYPLMILTSLLQFPLLLVRYNQGFYHLMLLDLPLLFF
                     STLSVVLFYGSAIWYLDGPRARRRLLHLPLVMGLGIGLAFSNARAVLEALLGVKTEFV
                     RTPKYKVEGASDETWKRKKYRRGRGWLPAFELAFAAYFLLAIAYAARMGMWGTIPFLS
                     LFCFGYGYMGLASLFQTARASKKPVAGSALA"
     gene            complement(3509..4042)
                     /locus_tag="VD968_13690"
     CDS             complement(3509..4042)
                     /locus_tag="VD968_13690"
                     /inference="COORDINATES: protein motif:HMM:NF036688.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5518 domain-containing protein"
                     /protein_id="HYE15490.1"
                     /translation="MNDKMKPALIGGAVAGLLSAIPFVNMVNACCCAWAILGGALATY
                     FYVKNSTTPASIGDGAVLGILAGVIAGVIYVILGVPLGLAVGNTMANALSSIVAQSDP
                     QQAAEIQRQMAAGASIGTAIVTGIIQAIVLAVFATIGGVLGVPIFEKRKGGAGTPPPP
                     PPPGGFGGGPGGYGQGV"
     gene            complement(4046..4651)
                     /locus_tag="VD968_13695"
     CDS             complement(4046..4651)
                     /locus_tag="VD968_13695"
                     /inference="COORDINATES: protein motif:HMM:NF021384.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2085 domain-containing protein"
                     /protein_id="HYE15491.1"
                     /translation="MPAPVSDYVRQIVPPAESARRRRAAILAWGVALAVAALGAAAVA
                     AAPVARSRGAEALAAALYGGFSVVCHQMPERSFWLAGFPLAVCARCAGMYAGMLAGVA
                     LYPLLRPLAPAAAPARVWLLLAVLPTSLDWALGVAGLWENTHLSRSLTASLLGVASAF
                     YVVPGLVELAVRRRELLRRAPAGHPGRGSSTNALRITQEKV"
     gene            complement(4716..5759)
                     /gene="glpX"
                     /locus_tag="VD968_13700"
     CDS             complement(4716..5759)
                     /gene="glpX"
                     /locus_tag="VD968_13700"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR00330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HYE15492.1"
                     /translation="MGQEMNSVGLSLDFLSVCEAAAIAAARTMGQGDRKYSDQVAVEA
                     MREAMGTVPMRGRIVIGEGERDEAPMLYIGEEVGAGFHAGACPEDFPEVDIAVDPLEG
                     TNLCALGANNAIAVLAASERGGLLNAPDIYMDKIVVGPSSRGAIDIDAPVKDNLKAIA
                     RRLSRDVNDLTVIVLDRPRHKKLIEDVRATGARIRLISDGDLSAGISAAVAGTNIHAL
                     MGIGGAPEGVLTAAAMKCLNGEIQARLVFDPERLGVDKSKVPPPEKVLERLREMGIND
                     PNKVYDTNDLAPGKKIIFAATGVTDGALLKGVRLFGAGKRTHSLIMTTESRHIRFIDT
                     VHVEGGPDTVIRF"
     gene            complement(5950..>6256)
                     /locus_tag="VD968_13705"
     CDS             complement(5950..>6256)
                     /locus_tag="VD968_13705"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYE15493.1"
                     /translation="LKNEGRPNARATSLAKWQATVRSEKAASMAIEVHGANGYSNDYP
                     VERYLRNCKAAVIYEGTRDIHTIMQADWALGLKGEKPARKTLPPYRPTESRDAVAAD"
BASE COUNT         1011 a         1971 c         2247 g         1027 t
ORIGIN      
        1 aggagccgct gaagaggccg gggaagaagt taagtatgcg gtcgaagttg aggtcggcgc
       61 cgaacttgaa ggtgctgcgg ccgcggacgt aggagaggtt gtcgatgaac tggacgcgct
      121 tgatggtggt ctcgcgcggg ctgaagttgt tgcggccgat ggagaggttc gtccccgccc
      181 cggtgcctat tacggcctcg ggctggtcgg agttggcctc gcccggctcc ttgtcgcgcg
      241 cgaactggaa gcggaactcg ttgacgaccg cctgcgtgag cgtcgaggcg agcgtccccg
      301 agaaggtgtc gctcttaacg atgctatcgc ccgagtgctc ctcggccgag agcgggccgt
      361 tgttctcgtt gttgcggccc gtgaagccct ggtggttgta gcgcagcgtc aactggttcg
      421 ccgtgttgag cgaaatgtcg gccttgccta aaaagacgtc ctggttgcgg ccgacctggt
      481 aggtgtcgag cttgggcagg aggacgttgc gcgcggcgag tggggcggtg gcgatgttcg
      541 gaacgtcgag gacttgcggc acgtctgcgc gctggccgtc gtaggtgaag aagaagaagg
      601 cgcggttctc gactatcggg ccgccgacgc gcccgccgaa ctggtgaatc ttcgagggcg
      661 ggcgcttgtt gggccggccg gcgcgcgcct ggttggcctt cgtcacaggg tcgttggcgt
      721 tcaaagactc gtctcggaaa tactcgaaca gcccgccgtg gaaggcgttc gtccccgact
      781 tcgtgacgac gtttatgacg gcgccgcccg cgcggccgaa ctcggccgag aagccgttct
      841 ggtttacctg gaactcctgc accgactcct cggagaactg gtagggcggg cggacgccgc
      901 cgcgcccgag cgcctggccg aagaaggtgt tgttgttgtc aacgccgtca acctggaggc
      961 tgttcagggt gccgcgctgg ccgccgacgg agaggtcgcc gccgcgcggg tcgcgcacga
     1021 ccgcgggcga gagtgtggcg aagtcttgga agttgcggcc gttgatgggc aggttctcga
     1081 tagcctgctg gttgatggtg gtcgcgaccg aggtgcgcgt ggtctcgacg gtgggcgcct
     1141 cgctcgtgac ggtcacggag acggaggcgc cgccgacggc gagcgacatg tcgagcgccg
     1201 tcttgctgcc cacggtgacg gtgactgcgg aagactcggc ggcgctgaag cccgaggccg
     1261 tcgcgcgcac ggcgtaggtg ccgggcggga gcagtatgag gcggtagttg ccgtcctcgt
     1321 cggtcgtcgc ggacttctcg aagccggtcg ccttgttcgt ggccgtgacg gtagcgttgg
     1381 tgacgacggc gccgttcggg tcgagcacgc ggccctctat gtcgccggtc gtggcctgcg
     1441 actgcgcgcg cgccgcggcg ggcgccagag cggagcacag cacgacgagc gcggcgaggc
     1501 gcgcgagaac ggggggaacg tttctcagca tgatttcctc tctcgaaaag ttttctggcg
     1561 cggcggccgc gagcgcgtgg cctcgtgcgc ggtgtgacgt tcgcggcgca gatactattg
     1621 cgtcgggccg agcgaggtca aggggattgc gggttcaggc cagcgccgag ccagcgaccg
     1681 gcttcttcga ggcccgcgcc gtctggaaga ggctcgccag ccccatgtag ccgtagccga
     1741 agcagaagag cgagaggaag ggtatcgtcc cccacatgcc catgcgcgcg gcgtaggcga
     1801 tggcgagcag gaagtatgcg gcgaaggcca gctcgaaggc gggcagccag ccgcgaccgc
     1861 gccggtactt cttgcgcttc catgtctcgt cgctcgcgcc ctcgaccttg tatttgggcg
     1921 tgcgcacgaa ctcggtcttg acgccgagca gcgcctccaa gacggcgcgc gcgttcgaga
     1981 acgcgagccc gatgcccagc cccatgacga gcggcaggtg gagcagcctg cgcctcgcgc
     2041 gggggccgtc taagtaccag atggccgacc cgtagaagag cacgaccgag agcgtcgaga
     2101 agaagagcag gggcaggtcg agcagcatca ggtggtagaa gccctggttg tagcgcacca
     2161 gcagcagcgg gaactgcaac aaactcgtca agatcatcag agggtagctg atgttgcccg
     2221 tcaggcggaa gaacatctcg agcttcacgc gcgccgggag ccgggcgcgc agtatccgcg
     2281 ggtagagctt gacggcgacc tccgtgacgc ccttcgccca gcgccgctgc tgcgccttga
     2341 aggcgttcat ctcgactggg acttccgacg gcgcgtcctc gtccaaaaga tagacgaagc
     2401 gccagcccat gagctgagcg cggaaggaga ggtctgtgtc ttccgtcagc gtgtcgtgct
     2461 gccagccgcc cgaaagctct atggcgcggc ggcgccacac cccggccgtg ccgttgaagt
     2521 tgaagaagcc gcccgtgcga ttgcgaaccg tctgctcgac gacgaagtgg ccgtccagaa
     2581 gtatcgtctg gaggcgcgta agcaggttgt aagagccgtt gatgtgcgac cagcgcatct
     2641 gcgcgcagcc cacgagcggg tcggtgaaga agtgcacgag cttgcgcagc gcgtcggggc
     2701 gcgggacgaa gtcagcgtcg aagatggcga cgagctcgcc cgcggcggtc ttgaggccgt
     2761 tccccaaagc gccggccttg aagcccgtgc ggtcatcgcg gtgaatgtag cttacgcgga
     2821 agccttcggc gcggtggcgc tcgaccgccg cgcgtgcggc ctcgcgcgtc tcgtcggtcg
     2881 agtcgtcgag cacctgaatc tcaagcaggt ggcgcgggta gtcgaggcgc gtcacggccg
     2941 cgagcaggcg ctcgacgacg tagagctcgt tgaagagcgg tagctggacg gtgacgcgcg
     3001 gcagctcctc ttccccgaag aacgctttgg ggcgcggcgc gacccgccgg tagcgccaga
     3061 agtccacgac ctgcttgacg cggtaggcgc cgtagagcgc gagcacgccg agcaccgcga
     3121 agtagagggc gagcacggcc cagtcgaacg agtcgaggcg gtagagcggg cttatgttct
     3181 cggccgtcct ggcgacggct tcctcgatgt actttcggaa gagggcttcg ggcgtgccga
     3241 agagggcggg aaagagttct gcggcgtcgg tcatctcaaa cttctcaggg cctcgttttt
     3301 cccgggctcg gcgcacgaca aagcgggcgg cgcgcccgtg aatccccctt gcgccgcccg
     3361 cttagatgcg ggaaaagcga cagacgatag ttagcagacg gtctgcggcg gaagcccggc
     3421 cgcgagggaa ggcgtgtgcc ttccggcatg aatctcccgg aagatatacg cccccctcac
     3481 ggccgggcta ctgccttagc ccttctactt agactccctg gccgtagccg cccggcccgc
     3541 cgccgaagcc gcccggcgga gggggaggag gaggcgtgcc ggcgccgccc ttgcgcttct
     3601 cgaagatggg gacgccgagc acgccgccga tggtcgcgaa gacggccagg actatcgcct
     3661 gtatgatgcc ggtcactatg gccgtcccga ttgaggcacc ggccgccatc tgcctctgaa
     3721 tctcggcggc ctgctgcggg tcggactgcg cgacgatgct ggagagcgcg ttagccatcg
     3781 tgttgccgac cgcgagcccg agcggcacgc cgaggatgac gtagatgacg cccgcgatga
     3841 cgccggccag tatgccgagc accgcgccgt cgccgatgga ggcaggcgtc gtggagttct
     3901 tgacgtagaa gtaggtcgcc agcgcgccgc cgagtatggc ccacgcgcag cagcaggcgt
     3961 tgaccatgtt gacgaacggg atggccgaga gcaggcccgc caccgcgccg ccgattaagg
     4021 ccggtttcat tttgtcgttc atcttctaca ccttctcttg ggttattcgt aaagcgtttg
     4081 ttgacgagcc gcggcccggg tggccggcgg gcgcgcgccg cagaagctca cgccgcctga
     4141 ccgccagttc gaccagcccc ggcacgacgt agaaggccga cgccacgccg agcagcgagg
     4201 ccgtcagcga gcgcgaaagg tgggtgttct cccagagccc cgcaacaccc agcgcccagt
     4261 ccagggacgt gggcagcacc gcaagcagca gccagacgcg cgcgggcgcg gcggccggcg
     4321 cgagcgggcg caggagcggg tagagggcga cgcccgcgag catgcccgcg tacatccccg
     4381 cgcagcgcgc gcagacggcg agggggaagc ccgcgagcca gaaagagcgc tccggcatct
     4441 ggtggcagac cacggagaag cctccgtaaa gcgccgccgc gagcgcctcg gccccgcgcg
     4501 agcgcgcgac cggcgccgcc gcgaccgccg ccgccccgag cgccgcgacc gccagcgcca
     4561 cgccccaggc cagaatcgcc gcgcgtcggc gccgcgccga ctccgcgggc gggacaatct
     4621 gccggacgta atccgagact ggagcaggca tcggaatgaa gatgctagat gtcagatgcc
     4681 ggatgctggt tttaccgaca tctaacatct gacgtctaaa atctaattac cgtgtcgggg
     4741 ccgccctcta cgtggacggt gtcaatgaag cgtatgtggc gcgactcggt cgtcattatg
     4801 agcgagtgcg tgcgcttgcc ggcgccgaag aggcgcactc ccttcaggag cgctccgtcg
     4861 gtgacgcccg tggcggcgaa gattatcttc ttgccgggcg cgaggtcgtt cgtgtcgtaa
     4921 accttgttcg ggtcgttgat gcccatctcg cgcagccgct ccaagacctt ctcgggcggc
     4981 ggcaccttgc tcttgtcaac gccgagccgc tcggggtcga agacgagccg ggcctgtatc
     5041 tcgccgttca ggcacttcat cgccgcggcc gtcaagacgc cttcgggcgc gccgcctatc
     5101 cccatcagcg cgtggatgtt cgtgccggcc accgccgcgg agatgcccgc cgacaggtcg
     5161 ccgtcgctta tgagccgtat gcgtgcgccc gttgcgcgca cgtcctcgat gagcttcttg
     5221 tggcgcgggc ggtcgagcac gattacggtg aggtcgttaa cgtcgcgcga gagccgccgc
     5281 gcgatggcct tcaggttgtc cttaacgggg gcgtcaatgt ctatggcgcc gcgcgacgag
     5341 gggccgacga cgatcttgtc catgtagatg tcgggcgcgt tgaggaggcc gccgcgctcg
     5401 gaggcggcga ggacggcgat tgcgttgttg gcgccgagcg cgcacaggtt cgtgccttcg
     5461 agcgggtcaa cggctatgtc aacctcgggg aagtcctcgg ggcatgcgcc cgcgtggaag
     5521 ccggcgccga cctcctcgcc tatgtagagc atgggcgcct cgtcgcgctc gccctcgcct
     5581 atgacgatgc ggccgcgcat cgggacggtg cccatcgcct cgcgcatcgc ctcgacggcg
     5641 acctggtcgg agtacttcct gtcgccctgc cccatcgtgc gcgccgcggc aatcgccgcc
     5701 gcctcgcaca cgctcaggaa gtcgagcgac agaccgacgc tgttcatctc ctgacccatg
     5761 ctcccacact cctgcggaac ctgaaagtta tgtttgctcc cgccgtgaaa aattaaagct
     5821 ggcagatgga aaggcacggg aatactagca gagcgcaggc ggaaatgaaa gaagtagaaa
     5881 aagcccggcc ggcggggagc acgctcaaaa gcgccctccg cgccggccgg gccgttgact
     5941 gccagactct cagtcggcgg cgactgcgtc gcgggactcg gtcgggcggt agggcgggag
     6001 tgtcttgcgc gcgggcttct cgcccttgag gccgagcgcc cagtcggcct gcatgatggt
     6061 gtgtatgtcg cgcgtgcctt cgtagatgac ggcggccttg cagttgcgca ggtaacgctc
     6121 gaccgggtag tcgttcgagt agccgttcgc gccgtgcacc tcgatcgcca tcgaggcggc
     6181 cttctcgctg cggacggtcg cctgccactt ggcgagcgag gtcgcgcggg cgttcgggcg
     6241 cccctcgttc ttgagc
//
LOCUS       DASPKR010000513        26730 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1242872, whole genome shotgun sequence.
ACCESSION   DASPKR010000513 DASPKR010000000
VERSION     DASPKR010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 26730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26730)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26730
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1242872"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..1272)
                     /locus_tag="VD968_13710"
     CDS             complement(4..1272)
                     /locus_tag="VD968_13710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15494.1"
                     /translation="MTLFALWRHLAWSRRTAEGETVTYYYTVTYDYYDEITWVVLALA
                     LAWLAWLLVRRHRRARALMRRPRRTNSRRLKRVVRVKRELSSRYLRPGFSANIHAVGV
                     GALAGGDYCVQVFIRDANEELWAGAGLAALPPSYRGVALVPVQAAAAGFIAQGVGRPI
                     EWEQYPNGIRGQQEVIIGGISGANTNLTGQSGTIGYFCTRKSRLPRRKEVHLLSNSHV
                     FADLRKAAADEGDLITQPSPGEPSGNRPVGALVAYSAIKFDGDLNDPNHVDAAVAKLW
                     GQQRHKPVIPLIGAVEGYAPKETVEPGETARKFGRTTGYTEGSVFSIHLDIWVRYDRT
                     GQSAFFRDQLLIEPALPAFTRFVAKGDSGSLVVDERRHALGLIFAGTPDPPEAPPSPP
                     PADGLKRIENYGVANPISEVLDRLKIELLV"
     gene            complement(1281..2123)
                     /locus_tag="VD968_13715"
     CDS             complement(1281..2123)
                     /locus_tag="VD968_13715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15495.1"
                     /translation="MPVKESSATALVRFTGLGIVCFNEERGRGEIAAIRDDKHRLSVR
                     IQRPVFQDGAESDIVVYQDLAAYTELPREGVSIEMRALGEPAVEGFEIYQRGQFDRLG
                     HADVNDFRWIVNMSALHGGAPLRPTGQRRHPLTKIYIGNGLFYTHKLATNLFFEKVEA
                     GTAGGAARREVFGNVGETIGVVIEGSAVVFTLRAGGREETHTLMHVPGLPFRVEIKNM
                     DYSENAIYSDMADYYGYLASPTGERFDLEPVLDDDEGGGGSVNQQQFCHPVATDYPSS
                     VDDI"
     gene            complement(2163..2789)
                     /locus_tag="VD968_13720"
     CDS             complement(2163..2789)
                     /locus_tag="VD968_13720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15496.1"
                     /translation="MLRTCPKCGDFYADELLAFCPADGSPLADVKASDEAWREGVRVM
                     REKAETFRRQSRRLKWRRVVTRVTTVLVATMVVCVAAVNTFIYFRPPSAEVAQTPTPS
                     PSPSPSEPAGSGEVNDNGRGGNENRGGGNENGGGNVNRNTNRNTNSNSNRNFNANHNV
                     NLNRNLNANLNRNLNDNRNRNSVRNENRRGDRNENRRRAVTFPPRRAL"
     gene            complement(2790..4568)
                     /locus_tag="VD968_13725"
     CDS             complement(2790..4568)
                     /locus_tag="VD968_13725"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing tetratricopeptide repeat
                     protein"
                     /protein_id="HYE15497.1"
                     /translation="MLPHEDAYFRSRSQSWRDKGTLAVLTLKLKFFSTSLGFSREALD
                     FARQTWPGSGRVNDNLLNLVRAAAAKGDFGAALGYAEESKLLALARPASPENTRTTAE
                     VFLLLADVKGRMNDCEAALADYDRARELYGRLPEISVGAYRIHKGRLLCFRQLGRREE
                     FAAELKTVLGLSEEYRMRLREDDSRKAFFAEEQVVFDEGVASAVEQGDARDAFALVET
                     SRARSLLDFVESDKPAAELEREFASVARPLAPEEIRARLPGGAQLVEFAVLPDRLAVW
                     VVSRDRLELFEKPVSADELEKKIDAYQSAVLDGEPAHALRRAAQELYALLLPPGLDAA
                     KQLCIVPDKSLHRLAFASLVSPSGKYLVEEFALTYAPSASVFVLATENAARKGRAGAE
                     SILSVGNPDFDREENPGLADLRAAEAEARAVAAGYVRSQLLLGGDATREKFLRLFGGV
                     EVVHFAGHFVSNRRSPGNSKLLFAGGELRSHELGAYKLPAAKLVVLSACETAFERYDK
                     SEGAVGVARTFLALGAPVVIASQWQVGSEPTKDLMIAFHRNRTGGGMTSAEALRRAQL
                     ELLGRGETSAPFYWAAFSLFGGYASY"
     gene            complement(4970..6304)
                     /locus_tag="VD968_13730"
     CDS             complement(4970..6304)
                     /locus_tag="VD968_13730"
                     /inference="COORDINATES: protein motif:HMM:NF024806.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15498.1"
                     /translation="MGETLKSEATVREYLLGRVSDEATLEGIEELLFTDEEFCSQVAL
                     AEDGLINDYVLGYMGEADAESFRATLAADPERRFKLELTQALREKALSARAAHAAEAK
                     PSFLTSLEAFFRRPAYVAALSALLVAVVASVIYFGRLGGADEIAELREVYARERPTET
                     RLSEFGYAPLGELRGATEPGERNRLRRIENSLIEATEKSPGARSHHSLGVFYLTQRKY
                     EDSVRELTSALKFDPANARIHNDLGAAHFETAKASPRERRLEPLSRALEEFTKATELD
                     PGLLEALFNRSLALQELGMPRQAKESWSLYLQKDSTSPWAGEARRHMERAGDAESSFR
                     TDEQILEDFLAAYRAGDGARAERVHDDTKGMLTAASVPLQLSRRLLLAKRRGDEAEAR
                     ESLAAMAYVGDSERARHSDFFFRSLRATTPGRAPTRQGRCLKPKRSSRARTA"
     gene            complement(6328..6867)
                     /locus_tag="VD968_13735"
     CDS             complement(6328..6867)
                     /locus_tag="VD968_13735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15499.1"
                     /translation="MDREVTREEFASFLEWLSPDGARAGEEYESLRFRLRTFFSQRRC
                     RFPEELADETINRVMLKHGEEKIEHPLAYCYGVARNVFRESLRRERRHADIEEVAVAA
                     PEPEGPSFSRECLDRCLGELPAESRSLILDYFSEARAAKIELHRRIAENLQMTQVALR
                     MSVMRIKKKLKICVRECMG"
     gene            complement(7003..7656)
                     /locus_tag="VD968_13740"
     CDS             complement(7003..7656)
                     /locus_tag="VD968_13740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15500.1"
                     /translation="MPRKLNPFKAVGALALLSLAASLAAAQVEGPARLGPVRAAADAR
                     LRPASLGCCKCLGGTNTLDLSTVASNNWTVNGSPVAFLTATHPAWNINPGPAKWVSTV
                     AGGGTGSVAPGTYEYRLDFVVPACAIEQSVTLTGNAGGDDDVDVFLDNASGPANSSNP
                     LFLSGCAGWCFNTPKKPLQTFTRAVAPGPHALIVRIRNGGGPSGMFVNATLAGACRS"
     gene            7868..8611
                     /locus_tag="VD968_13745"
     CDS             7868..8611
                     /locus_tag="VD968_13745"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4440 domain-containing protein"
                     /protein_id="HYE15501.1"
                     /translation="MKTILSAALAALCVSLFATAQDKGAAREAVEQEVLKAEREQREA
                     YLRRDAAAMERMVADELILTIQGGEVGGKADLLTFLREEPADPTLTLTAEGTRVRVDG
                     DTAVVVGRRIERRRRPDNNQEGVAHARYTRAYVKRGGRWLLLAEHLQAIPGERTPVKV
                     DTRVYDDYVGKYGSEIFGFSVVREGDKLIVVPDERGRPKAEVLPESESEFFVKGRNYR
                     ILFMRGRKGEVTYALLQINGVDVRAKRIG"
     gene            8815..9540
                     /locus_tag="VD968_13750"
     CDS             8815..9540
                     /locus_tag="VD968_13750"
                     /inference="COORDINATES: protein motif:HMM:NF015763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15502.1"
                     /translation="MDSISTTSVLAFGFVLGVRHAVEADHLAAVSAIVSERKSLLGSS
                     LAGGLWGVGHTLSLLAAGVAVILLGVRFEERHALALEFCVGLMLVGLGANALRKLARG
                     GRVHLHAHRHGGREHVHPHVHAAGGEAERAAHTHHGLRLDTRSLVVGMVHGFAGSAAL
                     MLLVLSSIKSAWVGMLYVAVFGVGSTGGMMLMSALVGLPMYLTAARFNRANLFVRGVA
                     GVFSLSFGLFMIYDIGFAGGLFR"
     gene            complement(9547..11859)
                     /locus_tag="VD968_13755"
     CDS             complement(9547..11859)
                     /locus_tag="VD968_13755"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE15503.1"
                     /translation="MKVVLALLLLLWPSATAFGAGALAAQGAARARVGGVVRDEAGAP
                     LARAEVTLARGRATTLRTLTGDDGRFAFEGVGAGEAVLTVGAAGFERQERRLMVSGGG
                     EEVIFVLAPARVSERVTVTATRTETEAGETAASVSVITREQLSTTAALTLDDALRQVP
                     GFQLFRRTGSRAANPTAQGVSLRGTGASGASRALILEDGVALNDPFGGWVYWGRVPRE
                     SVERVEVLRGGASHLYGSAAMGGVVQLLTRRAGEEPSLSASASYGTQRGHNASAFAGA
                     SRGRWAFTLAGETFNTAGYFLVRPEERGGADAPASSRHNSLAATVARELFQNFRLFAR
                     GSYFAEERANGTRLQYNRTHTRQLVVGADFVDGEAGSFSLRAHASAQTFDQTFSAVSA
                     GRDAETLTRLQRVPSQAAGLSLQWSRGFGARHATVAGFEAREVRGASDEIIYLAGRAS
                     SGVGAGGREGSAGVFAEDLFRVTDRLTLSAGVRLDRWRNFAAAETVRPLALAGPAATT
                     AFADRSETALSPRASLLYRLSDGAALYASGYRAFRAPTLNELYRDFRVGNVLTLADER
                     LRAERLAGGEAGASFSTRGGRLSARGALFWAEITRPVANVTLSVTPALITRQRHNLGR
                     TRSRGAEMEVEARLTRSWSLAAGFQLTGATVTRSPANPAAEGLSVPQIPRRQLTFRLI
                     YADPRRLAFGLQGRASGSQFDDDLNLFPLAPFLTLDAFASRRLTDAFSLFAAAENLTG
                     RRYEVGRTPVLTVGPPASVRFGFRVNLPAR"
     gene            12051..13925
                     /locus_tag="VD968_13760"
     CDS             12051..13925
                     /locus_tag="VD968_13760"
                     /inference="COORDINATES: protein motif:HMM:TIGR03075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methanol/ethanol family PQQ-dependent
                     dehydrogenase"
                     /protein_id="HYE15504.1"
                     /translation="MRQPGKTAARPSKFRLLLHAVCLALLIFTACTSKPKDEPPVGTQ
                     PARQLSEATGGASGAGAGGEDGQWVMAAKNYASTRFSGLDQINTENVKSLKVAWTFST
                     GVNRGQEAAPIVVGDTMYVVTPYPNILYALDLKNPGAAKWKYEPQPAAAAQGVACCDL
                     VNRGAAFADGRVFYNTLDAHTVAVDAATGKEIWKTKLGDINKGETMTMAPLVVKDKVI
                     VGNSGGEFGVRGWVTALNASDGTVAWRAYNTGPDSDVLIGANFKPFYPMDQGKDLGVS
                     SWPPEHWKMGGGTVWGWLSYDPELNLVYHGTANPGPWNPELRPGDNKWTCAIFARRPE
                     TGEAVWAYQFGPHDLFDWDAINEQILLDFPVNGQPRKVLVRPERNGYVYVMDRATGEI
                     LSANPFVHITATRGVDLKTGHLIHVEEKTPTMGKVVRDICPAAPGAKDWSPSAFSPRT
                     GLLYMPHNNLCMDFEGVEVNYIAGTPYVGANVKMYAGPGGHRGEFTAWDVAAGRAVWK
                     ITEKFPVWSGAVATAGDVVFYGTMDGYFKAVHARTGELLWQFKVGSGIIGQPVVYRGP
                     DGKEYVAVLSGVGGWAGAIVAGDLDPRDPTGALGFVGAMSDLPEHTTKGGTLYVFSLP
                     "
     gene            13933..14784
                     /locus_tag="VD968_13765"
     CDS             13933..14784
                     /locus_tag="VD968_13765"
                     /inference="COORDINATES: protein motif:HMM:TIGR03871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HYE15505.1"
                     /translation="MLLTALLAAFSLAACARDARQQQSRQESRQPAGPRVLRVCADPN
                     NMPFSNERGEGFENRIAELLAADLGAELQYTWWAQRRGFFRNTLRAGECDVVLGVPAS
                     FELALTTSPYYRSSYAFVYRKDRNLSIASFDDAALKKLKIGVQLVGDDAANAPPAHAL
                     AARGIVENVRGYTVYGDYARPDPTASIVEAVADGEVDVGVVWGPQAGYFARRSRAPLA
                     VVPVSPQIDRPFLPFVYDISMGVRRGEDGLREELDRFIERRRAEINRVLDEYGVPRVG
                     PGGAGDE"
     gene            14792..15352
                     /locus_tag="VD968_13770"
     CDS             14792..15352
                     /locus_tag="VD968_13770"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HYE15506.1"
                     /translation="MRAALVAPLLAAVLLALASCEREERGFRVDPPSSQRIGAKRLTE
                     LQPGQPQPPMVTVNEYERNAFAVSEGKRLYEWYNCVGCHAQGGGGMGPPLMDDKWIYG
                     SDPAQIFATIVEGRPNGMPSFRGRVPDHQVWQIAAYVRSMSGQVSKDVAPGRSDNMSG
                     KTPEASTEKMEPKPSAGVPKSAEMPK"
     gene            15349..16425
                     /gene="coxB"
                     /locus_tag="VD968_13775"
     CDS             15349..16425
                     /gene="coxB"
                     /locus_tag="VD968_13775"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HYE15507.1"
                     /translation="MKEGGRRKAGGGKGGFFGCLLLSAFCLLLLSGCRGSQSALDPAG
                     AQAGRIGQHLWMMLYVLGGVYLIVMAFLVAAVLRPRGSSYGDSVSKVEPDTGPDAGRE
                     RRMSRVVLAGIAATVAILFALLVSSFLTGRDLYSVSAKEHLTIKVIGHQWWWEVRYDN
                     RNPSLILTTANEIHIPVGQSVLFKLTSNDVIHSFWVPNLNGKTDLIPGHETLNWIRAD
                     RPGIYRGQCAEFCGYQHAHMGLRVIAESPEQFKAWYDSQLAPAREPSTPGEARGREVF
                     LSAPCIMCHRVQGTTAGGTAGPDLTHVASRGTIAAGTLENTRGHLAGWVTDSQKIKPG
                     NRMPPNNLEPQDLRALLDYLQSLK"
     gene            16444..18540
                     /gene="ctaD"
                     /locus_tag="VD968_13780"
     CDS             16444..18540
                     /gene="ctaD"
                     /locus_tag="VD968_13780"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit I"
                     /protein_id="HYE15508.1"
                     /translation="MLRKNKKGREKKSARKAGAEEGPRADAEGVRRAAARAVESRADK
                     ALADEVVEEHEREALEKTWGDAPGLWGWLTTVNHKRVGARSVVTAFVFFVLAGVLAVM
                     MRIQLARPENTFLGPDLYSQVFTMHGTVMMFLFAVPIMEAMAVYLVPLMVGTRNVAFP
                     RLNAYGYWMFLFGGIMIFVAFFLNVGPDVGWFAYPPLSGPEFSPGKRADFWAQLITFT
                     EVAALVVATELITTIFKMRAPGMSLNRIPVYVWAILVMSFMIFFAMPTVALGSACLIM
                     DRLVGTHFFNPAEGGDPILWQHLFWFFGHPEVYIIFIPATGFVSAIIPTFVRRPVFGY
                     TALVLSLVSTGFIGFGLWVHHMFAAGLPRMGESFFTAATMMIVIPSGVQIFCWIATIW
                     AGRPIFKTPLLFVLGFFFTFVLGGMTGVMQASVPLDLQVHDTYFVVAHFHYVLIGGSV
                     FPLFGAFYYWLPKFTGRMMSERLGKLNFWLMFVGFNLTFFPMHLLGLRGMPRRVYTYQ
                     PNLGWADMNLLASAGGVLLTLGVVVFIVNFFRSRRSGEPAGDNPWGASTLEWATSSPP
                     PSYNFVHLPTVGGRDALWEQPEDQPVVVGLRSDVREILVTKMLDAEPDHRETLPNPTI
                     WPLLAALATTGLFIASIFTPWAVPVGLVPVAVALIGWFWPKRKRKDDEPPDEVKERLG
                     EETARRRLEALEEVGA"
     gene            18540..19142
                     /locus_tag="VD968_13785"
     CDS             18540..19142
                     /locus_tag="VD968_13785"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HYE15509.1"
                     /translation="MSARRTVDVSGLPTFAFGHHQLTWWATWSIIFMEGTMFIVFFIT
                     YFFLRTTVHDWPPAVKPPYLTYGTINLLIILASVVPAYLTKKAAEELDLRRVRLWLAV
                     SIVFALAACVVRVFEFPALNCRWDQNAYGSIVWVNLGFHTTHLVTDLIDSVVLLVLLF
                     KGPLEGKHFVDVSENSIYWYFVVVFWALMYVVIYIAPRLM"
     gene            19162..19539
                     /locus_tag="VD968_13790"
     CDS             19162..19539
                     /locus_tag="VD968_13790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15510.1"
                     /translation="MSSEAAGEFKEGAGALALWAGVLAGPTATLVQLQTNYALVLWAC
                     GAGREWALHLVALLALLVAVGAGLLSLRNWRLAGGDWEDGGAGVMPRSRFMAAVGMFV
                     SLHSALITIAQWIPIFVYGPCDR"
     gene            19536..20510
                     /locus_tag="VD968_13795"
     CDS             19536..20510
                     /locus_tag="VD968_13795"
                     /inference="COORDINATES: protein motif:HMM:NF021214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HYE15511.1"
                     /translation="MRRRKAEGEGRNAEGGKGALFGCLLLTALCLLPPGVGAHDGKPH
                     GPADLVRTWGLDPLVLLSLALSGWLYARGLRRLWRASGAGRGIRRWEAWCFAGGWAAL
                     FVALVSPLHPMGEVLFSAHMTQHEILMLVAAPLVVLGRPVVAFLWALPVAGARRVGGW
                     GKAGWFQRPWKALTNPLAAWGLHAAALWAWHVPLLFEATLRSDLVHTAQHVCFLGSAL
                     LFWWALVHGPQGLAGYGAAVLYLFTTAVHSGVLGALITFAGSLVYPSYGATTQGWGLT
                     PLEDQQLGGLIMWVPAGAVYIVAGLAMCAGWMRESERRVLRRERMEVV"
     gene            20507..20926
                     /locus_tag="VD968_13800"
     CDS             20507..20926
                     /locus_tag="VD968_13800"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HYE15512.1"
                     /translation="MSAGRGRAGVLKACAAVAAAALLVLLPASCGGGRGEAERAASEM
                     TGGGDPSRGRAKIRHYGCVSCHTIPGLAEADALVGPPLDRIASRTYIGGVLTNSPDNM
                     IRWIQNPPGVDNLTAMPNLGVTEQDARDIASYLYTLK"
     gene            20951..21817
                     /locus_tag="VD968_13805"
     CDS             20951..21817
                     /locus_tag="VD968_13805"
                     /inference="COORDINATES: protein motif:HMM:NF013397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015499 - formate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015724 - formate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HYE15513.1"
                     /translation="MTEEPERAAEEQRPEGGEGGGRRAEQEDADRRSAPSGKVVYKAI
                     LSEGESELERPSSALFWSGLAAGLSMGFSMIAEGLLQAHLPDAPWRPLVAKFGYSVGF
                     LIVVLGRQQLYTENTLTPVLSLLQRKDASTFANVMRLWAVVLVANLLGALLVAAVASR
                     TTAFDEPTRAAFAEIGAKAMEHDFWTTMLRGVFAGWLIALMVWLLPFAETARVWVIVI
                     ITYVVGLGNFSHIIAGSVETFALAFAGRAAWGEVFGGYVLPTLVGNTLGGVTLVATLN
                     HAQVVSGGGEDI"
     gene            21886..22848
                     /locus_tag="VD968_13810"
     CDS             21886..22848
                     /locus_tag="VD968_13810"
                     /inference="COORDINATES: protein motif:HMM:TIGR03866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent catabolism-associated
                     beta-propeller protein"
                     /protein_id="HYE15514.1"
                     /translation="MLPLHAACSPAPRGPLAYVTNERDGTITVIDTATDEVVSTIRVG
                     ARPRGVRLSPDGRRVYVASSTPSGKNYDPEENKIVAVDAESGRVVARYEVGSDPEQLA
                     VSRHGSRLYASNEDAGTATVTDVESGAVLATLVVGVEPEGVQISPDGRWAYVTAETSN
                     TVSVIDTGKNEVVETFMVGSRPRDAAFSPDGSRAYVTTELGRTLEVVDTATHRVVRTL
                     EVPRGNGSVKPMGVVVSPDGRRVFVATGRGNTVVVFDAEGFELLATIPVGQRAWGLAV
                     TPDGRKVYAANSLSNDVSVIDTSTNRVVKTVKAGDGPWGIAVGR"
     gene            23111..>26730
                     /locus_tag="VD968_13815"
     CDS             23111..>26730
                     /locus_tag="VD968_13815"
                     /inference="COORDINATES: protein motif:HMM:NF018449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SBBP repeat-containing protein"
                     /protein_id="HYE15515.1"
                     /translation="MRARLAFALLLAAALLSGAAALDFTRGARAREDGPAAAAAPAGR
                     AARLKALDDYGRAPMGFEANTGQVEGPVDFVAQGIGYTLFLTPSEAVFALRSAETKPD
                     GKKAAATAGDARAEHPVAAEGAGYRVLRMKLVGASAPSAVSGEGIQPGRRNYFVGGDP
                     ARWRTNVPVYSKARYAGVYRGVDLVYYGNQRQLEYDFEVAPGADARPIRLKFEGADAA
                     KIDDESGDLLLTLAGAELVMRRPFIYQPGEGGGRREVEGRYTLRGRNSVGFEVGSYDR
                     TKPLIIDPVLNYSTYLGTSSADYTNGIAVDSAGNAYVTGATDSLSFPTTGQTFVSPNS
                     FFGQAFVTKLNPAGTALAYSTVVGGSDSDGANAIAVDSSGAAYVTGRTYSRDFPLVAP
                     LKSKGPFFRTANSAASWDNRATGFEPHVQIVQSVAVSPSSPSILYAGGSGGLHKSTDG
                     GATWQKLAAAGVTFPTFGTLAVHPSNPSVIYTANNNATFRSTDGGATFAEVPLSAFGA
                     AARCVEFDPTNSSVIYLCISSGVYKSTDDGATWSLLNSGLTNSNVLSLAVDPQTTTTL
                     YAGTFGGGVFKSTNGGASWSPANNGVSPLSTRNVSAIAVDPSSPSTLYFGTSYATGSG
                     EIYKSTDGAGLWAPLTNGVPKDNGISDIVINRTTTSTIYAATTGGGVLKTTNGGDSWA
                     PANAGLWNPVVTSLAADPTDSSKLYAGTQGGARTESDAFALKLSPAGDALAYSTYVGG
                     SADDEGRAVAVDSAGNAYLSGQTSSGNFPLASPVQSELRGPADAFVTKINAAGDAYVF
                     STYFGGAGLDGARAVATDSAGNAYAAGNTSSSDLQTTPGAFQTTAPGAGFTTSLNEGA
                     DAFVLKVAAAGSGVAYATYLGGAQGGEGANGIAVDSAGSAHVVGSTSSNNFPAQNPLR
                     PFGGADGYIAKLNAAGSALVYSSPLGGSGDDAAAAVALDAAGAAHVTGWTRSLDFPST
                     GGHLKSRSNLFRSVDAAATWRNDNNGVSAALVFDIEVDPTAPHVIYVGTSSGVFKSTN
                     GGRAWSPSNNGLANRNVRFIAVNPKSPSTVYAGTIFDGSNQGGLYKSTDGGASWAKTP
                     STASNGESFFDVYALALDPATPDTIYLHSGFRTFKSTTGGASWDGANNGLPGGATSFA
                     VDPSNTQVVYASVNTSEGGVFKTTDGGANWSKTSNGLTTTFVHRVVVSPQTPSTVYAT
                     SI"
BASE COUNT         4090 a         9030 c         9276 g         4334 t
ORIGIN      
        1 tactcagacg agcagctcaa ttttgaggcg gtcgaggact tcgctgatgg ggttggcgac
       61 gccgtagttc tcgattctct tcaggccgtc ggcgggcggg ggggagggcg gcgcttcggg
      121 cgggtcgggc gtgccggcga agataaggcc gagcgcgtgc cggcgttcgt caacgacgag
      181 ggagccgctg tcgcccttcg cgacgaacct tgtgaaggcg ggcagggcgg gctcgatgag
      241 gagttggtcc cggaagaacg cggactggcc cgtgcggtcg tagcgaaccc atatgtcgag
      301 gtggatggag aagacgctgc cttccgtgta gccggtggtg cggccgaact tgcgcgcggt
      361 ctcgccgggc tcgaccgtct ccttcggggc gtagccctct acggcgccga tgagcgggat
      421 gacgggcttg tgccgttgct gcccccagag ctttgcgacg gccgcgtcaa cgtggttggg
      481 gtcgtttagg tcgccgtcga acttaatagc cgagtaggcc acgagggcgc ccacgggcct
      541 gttgccggaa ggctcgccgg ggctcggctg ggttatcagg tcgccttcgt cggccgcggc
      601 cttccgcagg tctgcgaaga cgtgcgagtt gctaagcagg tgaacctcct tccggcgcgg
      661 cagcctgctc ttgcgcgtgc agaagtagcc gatggtgccg ctctgccccg tcaggttcgt
      721 gttcgcgccg ctgatgccgc cgattatcac ctcctgttgg ccgcgtatcc cgttcgggta
      781 ttgttcccac tcgatgggcc gccccacgcc ctgggcgatg aagcccgccg cggcggcctg
      841 caccgggacc agggcgacgc cgcggtagct gggcggcagc gccgccagtc cggcgccggc
      901 ccaaagctct tcgttcgcgt cgcgtatgaa gacctgtacg cagtagtcgc cgccagcgag
      961 cgcgcccacg ccgacggcgt gtatgttggc ggagaagccg ggccgcaggt agcgagagct
     1021 tagctctcgt ttgaccctga cgactcgttt gagccggcgg gagttcgtgc ggcgcggccg
     1081 ccgcatgagc gcgcgggcgc gcctgtgcct gcgaacgagg agccacgcga gccacgcgag
     1141 cgcgagcgcc aaaacgaccc acgttatctc gtcgtagtag tcgtaggtga cggtgtaata
     1201 gtaggtgacg gtctcgccct cggccgtgcg gcgcgaccat gcgaggtgtc tccagagggc
     1261 gaagagggtc atcgtcgggc tcagatgtcg tcaacggacg acgggtagtc cgtagcgacg
     1321 gggtggcaga actgctgctg gttgacggag cccccgccgc cttcgtcgtc gtcgagcacg
     1381 ggctcgaggt cgaagcgctc gcccgtgggg ctcgcgaggt agccgtagta gtcggccatg
     1441 tcgctgtaga tggcgttctc gctgtagtcc atgttcttga tctcgacgcg gaacgggagg
     1501 ccggggacgt gcatgagcgt gtgggtctcc tcgcgcccgc ccgcgcgcag cgtgaagact
     1561 acggccgagc cctcgatcac gacgcctatg gtctcgccca cgttgccgaa gacttcgcgc
     1621 cgcgccgcgc cgccggcggt gccggcctcc accttctcga agaaaaggtt ggtcgcgagc
     1681 ttgtgcgtgt agaagaggcc gttgccgatg tagattttcg tcaacgggtg gcggcgctgc
     1741 cccgtggggc gcagcggcgc gccgccgtgc agggcgctca tgttgactat ccagcggaag
     1801 tcgttcacgt cggcgtggcc gaggcggtcg aactgccccc gctggtagat ttcaaagccc
     1861 tcgacggcgg gctcgccgag cgccctcatc tcgatgctca cgccctccct gggcagctca
     1921 gtgtaggcgg ccaagtcctg atagacgacg atgtcgctct cggccccgtc ctgaaagacg
     1981 gggcgctgga ttctgacgct cagccggtgc ttgtcgtcgc ggatggcggc tatctcgccc
     2041 cggccccgct cctcgttgaa gcagacgatg ccgaggcccg tgaacctgac tagcgcggtg
     2101 gccgaactct cttttactgg catgacttcc tcctgcggcc ggggccgttt gaagctttcg
     2161 tcttagagtg ctcttcgcgg cgggaacgta acggcccggc ggcgattttc gttgcggtcg
     2221 cctctgcggt tctcgttgcg gacactgttc cggttgcggt tgtcgttgag gttgcggtta
     2281 aggttggcgt tgaggttgcg gttaaggtta acgttgtgat tggcgttgaa gttacggttg
     2341 gagttggagt tggtgttgcg gtttgtgttc ctgttgacgt tgccgcctcc gttctcgtta
     2401 cctccgccgc ggttctcgtt gccgccgcgg ccgttgtcgt tgacttcgcc ggagcctgcg
     2461 ggctcggacg gcgaaggcga aggcgaaggc gtgggcgtct gcgcgacttc ggccgacggc
     2521 ggccgaaagt agatgaaggt gttgacggcc gcgacgcaga cgaccatcgt cgccaccagc
     2581 accgtcgtca ccctcgtcac gacgcggcgc cacttgagcc tgcgcgactg cctcctgaac
     2641 gtctcggcct tctcgcgcat gacgcgcacg ccctcgcgcc acgcctcgtc agacgccttc
     2701 acgtcggcga gcggcgagcc gtcggccggg cagaacgcga gcagctcgtc cgcgtagaag
     2761 tcgccgcatt tcgggcaggt tcgcagcatt cagtaactcg cgtagccgcc gaagagcgag
     2821 aaggcggccc agtagaacgg cgcgctcgtc tcgccccggc cgagcagttc gagttgcgcg
     2881 cgccgcagcg cctcggcgga agtcatcccg cccccggtgc ggttgcggtg gaaggcgatc
     2941 atcaggtctt tcgtgggctc ggagcccacc tgccactggc tggcgataac gacgggcgcg
     3001 ccgagcgcga ggaaagtcct tgcgacgccg acggcgcctt cgctcttgtc gtagcgttcg
     3061 aacgccgtct cgcatgccga gagcacgacg agcttggccg cgggcagctt gtatgcgccc
     3121 agctcgtgcg agcgcagctc gccgcccgcg aagagcagct tggagttccc gggcgagcgg
     3181 cggttcgaga cgaagtggcc cgcgaagtgc acgacctcga cgccgccgaa cagccggagg
     3241 aatttctccc gcgtcgcgtc gccgccgagc agcagttgcg agcgcacgta gcctgcggcc
     3301 acggccctcg cctccgcctc ggccgcgcgc aggtctgcta gtcctgggtt ctcctcgcgg
     3361 tcgaagtccg ggttgccgac gctcagaatg ctctcggcgc cggcccgacc tttgcgcgcg
     3421 gcgttctcgg tcgccagcac gaagaccgaa gcgctcggcg cgtaagtgag ggcgaactct
     3481 tcgacgaggt acttgcccga gggcgagacg agcgaggcga acgcgagccg gtgcagagac
     3541 ttatcgggga cgatgcagag ctgcttcgcc gcgtcgagtc ccggcggcaa cagaagcgcg
     3601 tacagctctt gcgcggcgcg ccgcagcgcg tgcgcgggct ccccgtcgag cacggccgac
     3661 tggtaagcgt caatcttctt ctcaagctcg tccgcgctta cgggcttctc gaacagctcg
     3721 aggcggtctc gcgagacgac ccagacggcg agcctgtccg gcagcaccgc gaactctacg
     3781 agctgcgccc cgccgggcag ccgcgcgcgt atttcctccg gcgcgagcgg ccgcgcgacg
     3841 gaggcgaact ccctttcgag ctcggcggcc ggtttgtcgg actcaacgaa gtccaggagc
     3901 gagcgcgccc gcgacgtttc gaccagagcg aaggcgtcgc gcgcgtcgcc ctgctcgacg
     3961 gcgctcgcaa ccccttcgtc gaacacgacc tgctcctcgg cgaagaacgc cttgcgcgag
     4021 tcgtcctcgc ggagacgcat gcggtactcc tccgagagcc cgagcacggt cttcagctcg
     4081 gcggcgaact cctcgcgacg gccgagctgt cggaagcaga ggagccggcc cttgtgaatg
     4141 cggtaggcgc cgacgctgat ttccggcagg cgcccgtaaa gctcccgcgc cctgtcgtag
     4201 tcggcgagcg cagcctcgca gtcattcatg cggcccttca cgtcggcgag aaggaggaag
     4261 acttcggcgg tcgtgcgcgt gttctcgggg ctcgcgggcc gcgcgagcgc gagcagcttc
     4321 gactcctcgg cgtagccgag cgccgcgccg aagtcgccct tcgcggccgc ggcgcggacg
     4381 aggttcagga ggttgtcgtt gacgcggccg ctgccgggcc acgtctggcg ggcgaagtcg
     4441 agcgcctcgc gcgagaagcc gagcgaggtc gagaagaact tcagcttgag cgtgaggacg
     4501 gcgagcgtcc ccttgtcgcg ccacgattgg ctgcggctgc ggaagtaggc gtcttcgtga
     4561 ggtagcatcc tgctcgcgta ggcgagggcg ggctccagct cgccgaggtc tgagtagtag
     4621 agcgcgaggg cgtcggtggc gtgctgcgcc tcgaaggcgt tgcccgaggc ttccgccagc
     4681 cggagggccg tcctgaagtt tcggcccgtc tccgacaggc ccgtctgccg gaagtcgctg
     4741 acggcgagcc agtagtaagc tgtcggcgcg aggattttga agccgcgccg ctcggccgtc
     4801 tcgattaagg cggcgagccg caggcgcgtg gcggcgacct tcgcaacgtc gggtaggaac
     4861 tgcgccgccc aactctcggc gaccagcgcc tcgcattcgt cgccgagccg cgcgaagagg
     4921 tcgcggcttc tttcaaactg cgcaatggcc ttcccgaagt cgctcccgat caggcggtgc
     4981 gcgcccgcga agacctcttt ggcttcaagc agcggccctg tcttgtcggc gcccgccccg
     5041 gcgtagtagc gcgcaagctc cgaaaaaaaa agtcggagtg gcgcgcgcgc tcggagtcgc
     5101 cgacgtaggc catcgccgcg aggctctccc gcgcctcggc ctcgtcgccg cggcgcttcg
     5161 cgagaaggag cctgcgcgag agctgaagcg gcacggacgc ggccgtcagc atccccttcg
     5221 tatcgtcgtg aacccgctcg gcgcgcgcgc cgtcgcccgc gcggtatgcc gccaggaagt
     5281 cttcgagaat ctgctcgtcc gtcctgaaac tcgactcggc gtcgcccgcg cgctccatgt
     5341 gcctgcgcgc ctcgcccgcc cagggcgaag tcgaatcctt ctggaggtag agcgaccacg
     5401 actccttcgc ctgccgcggc atgcctagct cctgaagggc gagcgagcgg ttgaagaggg
     5461 cttcgagcag gccggggtcg agctccgtcg ccttcgtgaa ctcttcgagc gcgcgcgaga
     5521 gcggctctag cctcctctcg cgcggcgacg ccttagccgt ctcgaagtgc gcggcgccga
     5581 ggtcgttgtg aattcgcgcg ttcgccgggt cgaacttcag agcgctcgtc aactcgcgca
     5641 ccgagtcctc gtacttgcgc tgcgtgaggt agaagacccc gagcgagtgg tgcgagcgag
     5701 cgcccggcga cttctccgtg gcctctatga ggctgttctc gatgcggcgc aggcggttgc
     5761 gctcgcccgg ctccgtcgcc ccgcgaagct cgccgagcgg cgcgtagccg aactcggaca
     5821 ggcgcgtctc ggtgggccgc tcgcgcgcat agacctcacg cagctccgcg atctcgtccg
     5881 cgccgccgag ccggccgaag tagattacgg aggcgacgac ggcgaccaga agggcggaga
     5941 gcgcggcgac gtaggcgggc cgccggaaga aggcttcgag cgacgtcagg aaggagggct
     6001 tcgcttcggc ggcgtgcgcg gcgcgggccg agagcgcctt ctcgcggagc gcctgcgtga
     6061 gctccagctt gaagcgcctc tcggggtcgg cggccagcgt cgcgcgaaag ctctcggcgt
     6121 cggcctcgcc catgtagccg agcacgtagt cgttgatgag cccgtcctcg gcgagcgcga
     6181 cctgcgagca gaactcctcg tccgtgaaca gaagttcctc gatgccttcg agcgtcgcct
     6241 cgtccgagac gcggcccagg aggtactcgc gaacagtcgc ctcgctcttt aaggtttcgc
     6301 ccatcgccgc cgcctcgggc gctcctctca gcccatgcac tcccggacgc agatcttcag
     6361 cttcttcttg atgcgcatga cgctcatgcg cagggccacc tgcgtcatct gtaggttctc
     6421 cgcgatgcgc cggtgcaact cgatcttcgc cgccctggcc tcggagaagt agtcgaggat
     6481 gaggctgcgg ctctccgcgg gcagctcgcc caggcacctg tcgaggcact cccgcgagaa
     6541 gctcggcccc tcgggctcgg gtgcggcgac ggcgacctcc tcgatgtcgg cgtgccggcg
     6601 ctcgcgcctg agcgactcgc ggaagacgtt gcgggcgacg ccgtagcagt aggcgagcgg
     6661 gtgctcgatc ttctcctcgc cgtgcttgag catgacgcgg ttaatggtct cgtcggccag
     6721 ctcttcgggg aagcggcacc gcctctgcga gaagaaggtt cgcaggcgga agcgcaggct
     6781 ctcgtactct tcgcccgcgc gggcgccgtc ggggctgagc cattcgagaa agctagcaaa
     6841 ttcttcccgc gttacttctc tgtccacgtt cgttcccggt tgttgaggcc ggcccggagc
     6901 gggcccgctg gaagtcggcg acagcataac tcaattgccc ggggaaagac ataggaaaag
     6961 gcccgcgcct gctggggcgc gggccgggcc gggcgcgccg cactagctcc ggcaagcccc
     7021 cgcgagcgtc gcgttgacga acatccccga aggccccccg ccgttgcgga ttctgacaat
     7081 cagcgcgtgc gggcccggcg cgaccgcgcg cgtgaacgtc tgcaggggct tcttcggcgt
     7141 gttgaagcac cagcccgcgc agcccgacag gaagagcggg ttggaagagt tcgcagggcc
     7201 tgacgcgttg tcgagaaaca cgtcaacgtc gtcgtcgccg ccggcgttcc ccgtgagcgt
     7261 gacgctctgc tcgatggcgc aggcagggac tacgaagtcc agcctgtact cgtatgtgcc
     7321 aggtgcgacg ctgccagtgc cgccgcccgc cacggtcgag acccacttgg ccgggccggg
     7381 gttgatgttc caggccgggt gcgtggcggt caggaacgcg acggggctgc cgttgacagt
     7441 ccagttgttg gaggcgacgg tgctgaggtc gagcgtgtta gtcccgccca ggcacttgca
     7501 gcaacccagt gaggccgggc ggaggcgtgc gtccgcggcg gcgcgaacag gccccagcct
     7561 cgcggggcct tcgacctgcg cggccgccag agaggccgcg agtgacagca gcgcgagcgc
     7621 gccgaccgcc ttgaacgggt tgagttttct cggcatgact tttctccttt ggggcgtgaa
     7681 ttttcagtag gcccgcgcga ggttgcgtgc ctgcatctgt gagtggcgcc ggccggccga
     7741 aacgtaacgg cgacgacgcc ttataatttc ccgcgctcac tccgcgagcc gcgggaacaa
     7801 atcggcgtgc ggggcgtcta acgaacccga tccgtccaga ttttgtttgc ggggaggggg
     7861 agccgtcgtg aaaacgattc tgtcggccgc gctggcggcc ctttgcgtgt cgctcttcgc
     7921 cacggcgcag gacaagggag ccgcgaggga ggcggtcgag caggaggtgc tcaaggcgga
     7981 gcgcgagcag cgcgaggctt acttgcgcag ggacgcggcc gcgatggaaa ggatggtggc
     8041 agacgagctt atcctcacca tccagggcgg cgaggtgggc ggcaaggcag accttttaac
     8101 cttcctgcgg gaagagccgg ccgacccgac cttgacgctc acggccgagg gaacgcgagt
     8161 ccgcgttgac ggcgacacgg ccgtcgtggt cggccgcaga atcgagaggc ggcggcggcc
     8221 cgacaacaac caggagggcg tcgcccacgc gcgctacacg cgggcttacg tgaagcgcgg
     8281 cgggcgctgg ctcctcctgg ccgagcacct ccaggcgata ccgggcgagc gcacgcccgt
     8341 caaggttgac acgcgcgtct atgacgacta cgtcggcaag tacggcagcg agattttcgg
     8401 cttcagcgtc gtccgcgagg gcgacaagct catcgtcgtc cccgacgaga gggggaggcc
     8461 gaaggcggaa gtcctgcccg agtcggagtc cgagttcttc gtcaagggca ggaactaccg
     8521 catactcttc atgcgcggcc gcaagggcga agtcacatac gccctcctcc aaatcaacgg
     8581 cgtggacgtg cgggcgaaga gaatcggtta ggcccgcccg agcgcggcgt cggctggctt
     8641 gtgactcctt cggcacgggc cgctaatgct catagagtgt gaacaccgcg ccccccgctt
     8701 tgtgacgaaa ccctgagaag cgcgccgccg ggctttacgc cgggcggcga cttcgcggcg
     8761 cggggcgtat aatgccgggg ccttcggggg ccgcccctcc gggcgggccg ctttatggat
     8821 tcaatctcga cgacttcggt tctggcgttc ggcttcgtgc tgggcgtccg ccacgccgtg
     8881 gaggccgacc acctagcggc cgtctctgcg atagtcagcg agcgcaagag cctgctcggc
     8941 tcctcgctgg ccggcggcct ctggggcgtg ggccacacgc tctcgctgct cgcggccggc
     9001 gtcgccgtca tactgctcgg cgtgcgtttt gaggagcggc acgcgctcgc ccttgagttc
     9061 tgcgtcggcc tgatgctcgt cggtctcggc gcgaacgcgc tgcgcaagct cgcgcgcggc
     9121 gggcgcgtgc acctgcacgc tcaccgccac ggcgggcgcg agcacgtaca cccgcacgtc
     9181 cacgccgcag ggggcgaggc cgagcgcgcc gcgcacactc accacggcct ccggctcgac
     9241 actcgctcgc tcgtcgtcgg catggttcac ggcttcgccg gcagcgctgc actcatgctc
     9301 ctcgtgctct cctcgattaa gtccgcgtgg gtcgggatgc tctacgtggc cgtgttcggg
     9361 gtgggctcga cgggagggat gatgttgatg agcgcgctcg tcgggctgcc catgtacctt
     9421 acggccgcgc gcttcaaccg cgccaacctc ttcgtgcgcg gcgtggccgg agtgttcagc
     9481 ctcagcttcg ggctgtttat gatttacgac ataggcttcg cgggcggcct gttccgctga
     9541 agccgcctac cgcgcgggca gattcacacg aaagccgaac cggacggagg caggcgggcc
     9601 gacggtcaag acgggcgtgc ggccgacctc gtacctgcgg cccgtcaggt tctcggcggc
     9661 ggcgaagagg ctgaaggcgt cagtgaggcg gcgcgaggcg aaggcgtcta gcgtgaggaa
     9721 gggcgccagc gggaagaggt tcaggtcgtc gtcgaactgc gagccggaag cgcggccctg
     9781 taggccgaag gcgaggcgcc gcgggtcggc gtagatgagc cggaacgtga gctgccggcg
     9841 cggaatctgc gggacgctga ggccctcggc ggctgggttc gcgggggagc gcgtaaccgt
     9901 cgcgcccgtg agttgaaagc cggccgcgag cgaccagctt cgcgtgagcc tcgcctcgac
     9961 ttccatctcc gcgccgcgcg aacgcgtgcg gccgaggttg tggcgctggc gagtgatgag
    10021 agcgggcgtg acgctcaagg tcacgttcgc taccggcctc gttatctccg cccagaagag
    10081 cgcgccgcga gccgagagcc tgccgccgcg cgtgctgaag ctcgcgcccg cctcgccgcc
    10141 cgcgagacgc tctgcgcgga gccgctcgtc ggcgagcgtc agcacgttcc ccactcggaa
    10201 atccctgtac aactcgttga gcgtgggcgc gcggaacgcg cggtagcccg aggcgtagag
    10261 ggccgcgccg tccgaaagcc tgtagaggag cgaggcgcgc gggctcagcg ccgtctcgga
    10321 gcggtctgcg aacgcggtag tcgcggccgg cccggcgagg gcgagcggcc ttacggtctc
    10381 ggcggcggcg aagttgcgcc agcggtcgag gcgaaccccc gcggagagcg tcaaacgatc
    10441 cgtgactctg aataggtctt cggcgaagac gccggccgac ccctcgcgcc caccggcacc
    10501 cacgccgctc gacgcgcgcc cggccaaata aataatctcg tcgctcgcgc cccgcacctc
    10561 gcgcgcctcg aagcccgcga ccgtggcgtg gcgcgcgccg aagccgcgcg accattgaag
    10621 gctcaggccg gcggcctgcg aaggcacgcg ttgaaggcgc gtcagggtct ctgcgtcgcg
    10681 gccggccgag acggccgaga aggtctggtc gaaggtttgc gcggaggcgt gggcgcggag
    10741 cgagaacgag ccggcttcgc cgtcaacaaa atcggcgccg acgacgagtt ggcgcgtgtg
    10801 cgtgcggttg tactgtaggc gcgtgccgtt agcgcgctcc tccgcgaagt aagagccgcg
    10861 cgcgaagagg cgaaagtttt ggaagagttc gcgcgcgacg gtcgccgcga gcgagttgtg
    10921 gcgcgaagac gcgggcgcgt ccgccccgcc gcgctcttcc gggcggacta ggaaatagcc
    10981 ggccgtgttg aaagtctcgc ccgcgagcgt gaaggcccag cggccgcggc tcgcgcccgc
    11041 gaaggccgag gcgttgtgtc ccctctgcgt gccgtaagag gccgaggccg agaggctcgg
    11101 ctcttccccg gcgcggcgcg tgagcaactg cacgacgcct cccatcgcgg cgctgccgta
    11161 gaggtgagag gcgccgccgc gcaggacttc gacgcgctcg accgactcgc gcggcacgcg
    11221 cccccaatag acccagccgc cgaaggggtc gtttaaggcg accccgtctt ctaggatgag
    11281 ggcgcggctc gcgccgctcg cgcccgtgcc gcgcagggag acgccctgcg cggtcgggtt
    11341 ggcggcgcgg ctgcccgtgc ggcggaatag ctggaagccc ggcacctgcc tgagcgcgtc
    11401 gtcgagcgtg agcgcggccg tcgtcgagag ctgttcgcgc gtgatgacgg agacgctggc
    11461 cgcagtctcg cccgcctccg tctcagtccg cgtggccgtc accgtcacgc gctccgagac
    11521 gcgcgcgggc gcgagcacga agatgacctc ttcgcccccg ccgctcacca tcagccgccg
    11581 ctcctgacgc tcgaacccgg ccgcgccgac agtcaagacc gcttcgcccg ccccgacgcc
    11641 ctcgaaggcg aaccgcccgt catcgcccgt cagcgtgcgc agcgtcgtcg cgcgcccgcg
    11701 cgcgagcgtc acctccgccc gggctaaggg cgcgcccgcc tcgtccctga cgacgcctcc
    11761 gacgcgcgct cgcgcagcgc cctgcgccgc cagcgcgccg gcgccgaagg cagtagccga
    11821 cggccagagg agcaacagaa gtgcgagcac gactttcatc tttccatgcg cggcatcggc
    11881 tgcttagggt ataggcgcgg gcgtgggcct tatagtacgc cagcgtactt acctgcgcac
    11941 ccttctggtc taatctgttg acccctttag aatttttcaa ttccggtcgg ctgtttagta
    12001 accctgacgc tcggcggcga gccgcggccc gctcgcgagc aggaggtgcg atgcgtcaac
    12061 ccggaaagac ggcggcccgc ccgtcaaagt ttcggctcct gcttcacgcc gtctgcctcg
    12121 ctctcttaat cttcacagcc tgcacttcta aacccaaaga cgagccccct gtagggacac
    12181 agccggcgcg gcaactgtcc gaagccacgg gcggggcgag cggcgcgggc gcgggcgggg
    12241 aggacgggca gtgggtgatg gccgcaaaga actacgcctc gacgcgcttc agcggcctcg
    12301 accagataaa caccgagaac gtaaagagcc tgaaggtcgc gtggactttc tcgaccggcg
    12361 tcaaccgcgg gcaggaggcc gcgcccatag tggtcggcga tacgatgtac gtcgtcacgc
    12421 cctacccgaa catcctctac gcgctcgacc ttaaaaaccc cggcgccgcg aagtggaagt
    12481 acgagccgca gccggcggcg gccgcgcagg gcgtggcctg ctgcgacctg gtcaaccgcg
    12541 gcgccgcctt cgccgacggc cgcgtttttt ataacacgct cgacgcgcac accgtcgccg
    12601 ttgacgccgc gaccggaaaa gaaatctgga agaccaagct cggggatata aacaagggcg
    12661 agacgatgac gatggcgccg ctcgtcgtca aggacaaggt gatagtcggc aactcgggcg
    12721 gcgagttcgg cgtgcgcggc tgggtgacgg ccttgaacgc ctcggacggc acggtggctt
    12781 ggcgcgccta caacaccggg cctgactcgg acgtgctcat aggcgcgaac ttcaagccct
    12841 tctacccgat ggatcagggg aaggatttgg gcgtctcctc ctggccgccg gagcactgga
    12901 agatgggcgg cggcaccgtg tggggctggc tctcctacga ccctgagctg aacctcgtct
    12961 atcacggcac ggccaacccc ggcccctgga acccggagct ccggcccggc gacaacaagt
    13021 ggacttgcgc catcttcgcc cgccgccccg agacgggcga ggccgtctgg gcataccagt
    13081 tcggcccgca cgacctcttc gactgggacg ccatcaacga gcagattctc ctcgacttcc
    13141 ccgtgaacgg ccagccccgc aaggtgctag tccgcccaga gcgcaacggc tacgtctatg
    13201 tcatggacag ggcgacgggc gagattctct cggccaaccc cttcgtccac atcacggcga
    13261 cgcgcggcgt tgacttaaag accggccacc tcatacacgt cgaggagaag acgccgacga
    13321 tgggcaaggt cgtgcgcgac atatgcccgg ccgcgcccgg cgctaaggac tggagccctt
    13381 cggccttctc gccgcggacg ggcctgctct acatgccgca caacaacctc tgcatggact
    13441 tcgagggcgt cgaggtcaac tacatcgccg gcacgcccta cgtcggcgcc aacgtcaaga
    13501 tgtacgcggg gccgggcggc caccgcggcg agttcacggc gtgggacgtg gccgcgggcc
    13561 gcgccgtctg gaagattacg gagaagttcc ccgtctggag cggcgcggtc gcaaccgcgg
    13621 gcgacgtggt cttctacggg acgatggacg gctacttcaa ggccgtgcac gcgcggacgg
    13681 gcgagctgct ctggcagttc aaggtcggct cagggatcat cggccagccg gtcgtctatc
    13741 gagggcctga cgggaaggag tacgtggcgg tgctctcggg cgtgggcggc tgggccggcg
    13801 cgatagtcgc gggcgacctc gacccgcgcg acccgacggg cgcgctcggc ttcgtcggcg
    13861 ccatgtccga cctgcccgag cacacgacga agggggggac gctctatgtc ttctcgctcc
    13921 cctgaagcca cgatgttgtt gactgcattg ctggccgctt tctctttagc cgcatgcgcg
    13981 agggatgcgc ggcagcagca gtcgcgtcag gagtctcggc aaccggccgg gccgcgtgtg
    14041 ctgagggtgt gtgctgaccc gaacaacatg cctttctcga acgagcgcgg cgagggcttc
    14101 gagaacagga tagcggaact gctggccgcg gacttgggcg cggagcttca atacacatgg
    14161 tgggcgcagc ggcgcggctt cttccgaaac acgctgaggg cgggcgagtg cgacgtggtt
    14221 ctgggcgtcc cggcgagctt cgagcttgcg ctcacgacct cgccctacta ccgctcctct
    14281 tacgccttcg tctatcgcaa ggacaggaac ctcagcatcg cctcgttcga cgacgcggcg
    14341 cttaagaagt tgaagatagg cgtgcagcta gtcggcgacg atgcggcgaa cgcgccgccc
    14401 gcgcacgcgc tcgccgcgcg cggcatagtc gagaacgtgc gcggctacac ggtctatggc
    14461 gactacgccc ggccagaccc gacggcgagc atcgtcgagg ccgtggccga cggcgaggtg
    14521 gacgtaggcg tagtctgggg gccgcaggcc ggctacttcg cgcggcgctc gcgggcgccc
    14581 ctggcggtcg tccccgtctc gccgcagata gacaggccgt tcctgccctt cgtctatgac
    14641 atctctatgg gcgtgcgccg cggcgaagac ggcttgcgcg aagagctcga ccgtttcata
    14701 gagcgcaggc gggcggagat taaccgcgtg ctcgacgagt acggcgtccc gcgcgtcggg
    14761 ccgggggggg cgggcgatga ataggagaaa gatgagggcg gcgctggtcg cgcctctgct
    14821 cgccgccgtg ctgctcgcgc tcgcgtcgtg cgagagggag gagcgcggct tccgcgttga
    14881 cccgccttcg tcgcagcgca tcggcgcgaa gcggctgacg gagcttcagc ccggccagcc
    14941 gcagcccccg atggtcaccg tcaacgagta cgagcggaac gccttcgctg tctccgaagg
    15001 gaagcggctc tacgagtggt acaactgcgt cgggtgccac gcgcagggcg gcggggggat
    15061 ggggccgccg ctcatggacg acaagtggat ttacggctcg gacccggcgc agatattcgc
    15121 gaccattgtc gaggggcgcc cgaacgggat gccgtcgttc cgcggcagag tgccggatca
    15181 tcaggtctgg cagatagccg cctacgtgcg cagcatgagc gggcaggtgt cgaaggacgt
    15241 cgcgcccggc cgcagcgaca acatgagcgg caagacgccc gaagcctcga ccgagaagat
    15301 ggagccgaag ccctcggccg gcgtgccgaa gtcggcggag atgcccaaat gaaagaaggc
    15361 ggaaggcgga aggcgggagg cggaaagggc ggcttcttcg gctgcctact gctttccgcc
    15421 ttctgccttc ttctcctgtc cggctgccgc ggctcccagt cggccttaga ccctgcgggc
    15481 gcgcaggcgg ggcggatagg gcagcacttg tggatgatgc tctacgtgct ggggggcgtc
    15541 tatctgatag tgatggcctt cctcgtcgcg gcggtgctgc ggccgcgggg cagctcctac
    15601 ggagattccg tgtcgaaggt cgagccggac acggggccgg acgcgggccg cgagcggcgc
    15661 atgtcgcgcg tagtcctcgc gggcatcgct gcgacggtcg cgatactttt cgcgctgctc
    15721 gtttcgagtt tcctgacggg ccgcgatctc tactcggtct cggcaaaaga gcacctgact
    15781 attaaggtga taggacacca gtggtggtgg gaagtcaggt acgacaaccg taacccgagc
    15841 ctgatactta cgacggcgaa cgagattcac ataccagtcg gccagagcgt gctatttaag
    15901 ctcacctcta acgacgtgat acacagcttc tgggtgccta acttaaacgg caagaccgac
    15961 ctcatccccg gtcacgagac cctcaactgg attcgcgccg accgccccgg catttaccgc
    16021 ggccagtgcg cggagttctg cggctaccag cacgcgcaca tggggctcag ggtcatcgcc
    16081 gagagccccg agcagttcaa ggcgtggtac gactcgcagc tcgcccccgc gcgcgagccc
    16141 tcgacgcccg gcgaggcccg gggccgagaa gtcttcctct cggcgccctg catcatgtgc
    16201 caccgcgtgc aggggacgac cgcgggcggg acggccggcc cagacctgac gcacgtggct
    16261 agccgcggga cgatagcggc ggggactctt gagaacacgc gcggccacct cgccgggtgg
    16321 gtcacggact cacagaagat aaagccgggc aaccgcatgc cgccgaacaa ccttgagccg
    16381 caagacctgc gcgcgctgct cgattacctg caaagcctca agtgaggggg ccggaggtcg
    16441 cgtttgctgc gaaagaataa gaaggggcgc gagaagaagt cggcgcgcaa ggccggggcg
    16501 gaggaaggcc cgcgcgccga cgccgagggc gtgcgccgcg cggccgcgcg cgccgtcgag
    16561 tcgcgcgcgg acaaggcgct ggccgacgag gtggtggagg agcacgagcg cgaggccctt
    16621 gagaagactt ggggcgacgc gccgggcctc tggggctggc taacgaccgt caaccacaag
    16681 agggtgggcg cgcgctcggt cgtgacggcc ttcgtcttct tcgtgctcgc cggcgtgctc
    16741 gccgtgatga tgcgcataca gctcgcccgc cccgagaaca ccttcctcgg cccggacctc
    16801 tacagccagg tcttcacgat gcacggcacc gtgatgatgt tcctcttcgc cgtccccatc
    16861 atggaggcga tggccgtcta tctggtgccg ctgatggtcg ggacgcgcaa cgtcgccttc
    16921 ccgcgcctga acgcctacgg ctactggatg ttcctcttcg gcggcataat gatcttcgtc
    16981 gccttcttcc tcaacgtcgg ccccgacgtg ggctggttcg cctacccgcc gctctccggc
    17041 cccgagttca gccccggcaa gcgcgcggac ttctgggcgc aactcatcac gttcacggag
    17101 gtggccgcgc tcgtcgtcgc gaccgagctg ataacgacca tcttcaagat gcgcgctccg
    17161 gggatgagcc tgaaccgcat acccgtctat gtgtgggcga tcctcgtgat gtcgttcatg
    17221 atcttcttcg cgatgccgac cgtggctctt gggagcgcgt gcctcatcat ggacaggctc
    17281 gtcggcacgc acttcttcaa cccggccgag ggcggcgacc ccatactctg gcagcacctc
    17341 ttctggttct tcggccaccc ggaggtctat atcatcttca tcccggccac gggcttcgtg
    17401 tcggccatca tcccgacgtt cgtgcgccgg cccgtcttcg gctacacggc gctcgtgctc
    17461 tcgctcgtct cgaccggctt catagggttc ggcctgtggg ttcaccacat gttcgcggcc
    17521 ggcctgccgc gcatgggcga gagcttcttc acggcggcga cgatgatgat agtgatcccg
    17581 agcggcgtgc agatattctg ctggatagcg accatctggg cggggcggcc gatcttcaag
    17641 acgccgctgc tcttcgtcct cggcttcttc ttcacgttcg tgctgggcgg gatgacgggc
    17701 gtgatgcagg cgagcgtgcc gctcgacctg caagtccacg acacctactt cgtcgtcgcc
    17761 cacttccact acgtgctaat cggcggctcg gtcttcccgc tcttcggcgc cttctactac
    17821 tggctgccga agttcacggg gcgcatgatg agcgagcggc tgggcaagct caacttctgg
    17881 ctgatgttcg tcggcttcaa cctgaccttc ttcccgatgc acctgctcgg cctgcgcggg
    17941 atgccgcgca gggtctatac ctaccagccg aacctcggct gggcggacat gaacctcctg
    18001 gcgagcgcgg gcggcgtgct cttgacgctc ggcgtcgtgg tcttcatcgt caacttcttc
    18061 cgcagccgcc gctcgggcga gccggcgggc gacaacccgt ggggcgcctc gacgctcgaa
    18121 tgggccacgt cgtcgccgcc gccctcttac aacttcgtgc acctgccgac cgtcggcggg
    18181 cgcgacgcgc tgtgggagca gcccgaagac caacccgtcg tcgtcggcct gcgctccgac
    18241 gtgcgcgaga ttctggtgac gaagatgctc gacgccgagc cagaccacag ggagacgctc
    18301 cccaacccca ccatctggcc gctcctcgcg gcccttgcaa cgaccgggct cttcatcgcc
    18361 tcgatattca cgccgtgggc cgtccccgtc gggctcgtcc ccgtggccgt cgcgctcata
    18421 ggctggttct ggccgaagag gaagaggaag gacgacgagc cgcccgacga ggtgaaggag
    18481 cggctgggcg aggagaccgc gaggcggagg ctcgaagctc tggaggaggt gggcgcctga
    18541 tgagcgcgcg gcgcacggtt gacgtgtcgg ggctgccgac cttcgcgttc ggccaccacc
    18601 agcttacgtg gtgggcgacg tggagcatca tattcatgga aggcacgatg ttcatcgtgt
    18661 tcttcatcac ctacttcttc ctgcgaacga ccgtccacga ctggccgccc gcggtcaagc
    18721 cgccctacct gacctacggc acgataaacc ttctgataat cctggcgagc gttgtgccgg
    18781 cgtacttgac gaagaaggcg gccgaggagt tagaccttcg gcgcgtgcgg ctctggctcg
    18841 ccgtctccat cgtgttcgcg ctcgctgcct gcgtcgtgcg cgtcttcgag ttcccggcgc
    18901 tcaactgccg gtgggatcag aacgcctacg gctctatcgt ctgggtcaac ttgggcttcc
    18961 acacgacgca cctcgtgacg gacctgattg actcggtagt gctgctcgtc ctgcttttta
    19021 aagggccgct cgagggcaag catttcgtgg acgtgtcgga gaacagcatc tactggtact
    19081 tcgtcgtagt cttctgggcg ctcatgtacg tggtcatcta catagcgccg cggctgatgt
    19141 gagcgggtgg agtttaaaga ggtgagttca gaagccgcgg gagagttcaa agagggcgcg
    19201 ggggcgctgg cgctctgggc gggcgtgctc gcggggccga cggccacgct cgtgcagttg
    19261 cagaccaact acgcgctcgt gctgtgggcc tgcggcgcgg ggcgcgagtg ggcgctgcac
    19321 ctggtcgcgc tcctggcgct gctggtggcg gtcggggcgg ggctgctctc gcttcgcaac
    19381 tggcggctcg cgggcggcga ctgggaggac ggaggggcgg gcgtcatgcc gcgcagccgc
    19441 ttcatggcgg ccgtcgggat gttcgtgagc ctgcactcgg cgctcataac catagctcag
    19501 tggatcccta tcttcgttta cgggccgtgc gacagatgag aaggcggaag gcagaaggcg
    19561 aagggcggaa tgcggaaggc gggaagggcg ctctcttcgg ctgcctcctg cttactgccc
    19621 tatgccttct gcctcccggc gtgggcgcgc acgacgggaa gccgcacggg ccggctgacc
    19681 ttgtgcggac gtgggggtta gaccctctgg tgctcttgag cctcgcgctg tcgggctggc
    19741 tatacgcgcg ggggctgcgg cggctgtggc gcgcttcggg ggcggggcgg gggattcggc
    19801 gctgggaggc gtggtgcttc gcgggcgggt gggcggcgct cttcgtcgcg ctggtgagcc
    19861 cgctgcaccc gatgggtgaa gtcttgttct cggcgcatat gacgcagcac gagattctga
    19921 tgctcgtggc cgccccgctc gtcgtgctgg ggaggccggt ggtcgcgttc ctttgggccc
    19981 tgccggtcgc gggcgcgcgg cgcgtaggcg ggtgggggaa ggcgggctgg ttccagcgcc
    20041 cgtggaaggc gcttacgaac ccgctcgcgg cgtgggggct gcatgcggcg gcgctgtggg
    20101 cgtggcacgt ccccttgctc ttcgaggcta cgcttcgtag cgacctcgtc cacaccgccc
    20161 agcacgtctg cttcctcggc tcggcgctcc tgttctggtg ggcgctcgtg cacgggccgc
    20221 aagggttggc gggctacggc gcggccgtgc tttacctctt cacgacggcc gtgcacagcg
    20281 gcgtgctcgg cgcgctgata acgttcgcgg gctcgctggt ctatccgtca tacggcgcga
    20341 cgacgcaggg ctggggcctc acgccgctcg aggatcagca gctcggcggg ctcattatgt
    20401 gggtgcctgc cggggccgtc tatatcgtgg cgggcctggc gatgtgcgcc ggctggatgc
    20461 gcgagtcgga gcggagggtc ttgaggcgcg agcgcatgga ggtcgtatga gcgcggggcg
    20521 cgggcgggcg ggcgtgttga aggcgtgcgc ggccgtggcc gccgccgcgc tactcgtgtt
    20581 gctcccggcc tcttgcggcg gcgggcgcgg cgaggcggag cgcgcggcct ccgagatgac
    20641 aggcggcgga gacccctctc gcgggcgcgc gaagatacgc cactacggct gcgtctcgtg
    20701 ccacacgata ccggggcttg cggaggccga cgcgctcgtc ggccccccgc tcgaccgcat
    20761 cgccagccgc acctacatcg ggggcgtgct caccaactcg cccgacaaca tgatccgctg
    20821 gattcagaac ccgccgggcg ttgacaacct gaccgccatg ccgaacctcg gcgtcaccga
    20881 gcaggacgcg cgcgacatag ccagctacct ctacacgctg aagtgacggc gcgggccggg
    20941 ggagggaaga gtgaccgaag agccggagcg agcggccgaa gagcagcggc cggagggagg
    21001 cgagggaggc gggcggcggg ccgagcagga ggacgccgac cgccgcagcg cgccgagcgg
    21061 caaggtcgtc tataaggcca tcctgagcga gggcgaatcg gagctagagc gcccgtcgtc
    21121 ggcgctcttc tggtctgggc tcgccgccgg cctctcgatg ggcttctcga tgatagccga
    21181 ggggcttctg caagctcacc tgccggacgc gccgtggcgg ccgctcgtcg ccaagttcgg
    21241 ctacagcgtc ggcttcctca tcgtcgtgct cggccggcag caactctaca cggagaacac
    21301 gttgacgccc gtcctctccc tgttgcagag gaaggacgcc tccaccttcg cgaacgtcat
    21361 gcggctctgg gccgtcgtgc tcgtagccaa cctcctcggc gcgctgctcg tcgcggcggt
    21421 cgcctcgcgc acaaccgcct tcgacgagcc aacgcgcgcc gccttcgccg agattggcgc
    21481 taaagccatg gagcacgact tctggacgac gatgctgcgc ggcgtcttcg ccgggtggct
    21541 catcgccctg atggtctggc tgctgccctt cgcagagacg gcgcgcgtct gggtcatcgt
    21601 catcatcacc tacgtcgtgg gcctgggtaa cttcagccac atcatagcgg gctcggtcga
    21661 gaccttcgcg ctcgccttcg cggggcgcgc cgcgtggggc gaggtcttcg gcggctacgt
    21721 cctgccgacg ctcgtgggca acacgctcgg cggcgtcacg ctcgtcgcca cgctcaacca
    21781 cgcgcaggta gtctccggcg ggggcgaaga catctgaggc gcggacggcc aacgacgatt
    21841 agacgtagcg cgagcgacaa acgggcgctc gccttcttac tgctcctgct ccccttacac
    21901 gcggcctgct ctccggcccc gcgcggcccg ctcgcatacg tcacgaacga gcgcgacggc
    21961 accatcaccg tcatagacac ggcgaccgac gaggtggtct cgaccatacg cgtcggcgcg
    22021 cggccgcgcg gcgtgcgcct gagccccgac ggccggcgcg tgtacgtcgc atcgagcacg
    22081 ccttcgggca agaactacga ccccgaggag aacaagatcg tcgccgttga cgcggagagc
    22141 ggccgagttg tggcgcgcta cgaggtgggc tccgaccccg agcagctcgc ggtcagccgc
    22201 cacggctcgc gcctctacgc ctcgaacgag gatgccggga cggccaccgt gacggatgtc
    22261 gagagcggcg cagtcctcgc cacgctcgtc gtgggcgtcg agcccgaggg cgtgcagata
    22321 agcccggacg ggcgctgggc ctacgtcacg gccgagacga gtaacaccgt ctccgtcata
    22381 gacaccggga agaacgaggt ggtcgagacc ttcatggtcg gctcgcgccc gcgcgacgcc
    22441 gccttctcgc ccgacggctc gcgcgcatac gtcacgaccg agttgggccg caccctcgag
    22501 gtcgttgaca ccgccaccca cagggtcgtc cgcacgctcg aagtgccgcg cggcaacggg
    22561 agcgtgaagc ccatgggagt cgtggtctcc ccggacggcc ggcgcgtctt cgtcgcgacg
    22621 ggcaggggca acacggtcgt ggtcttcgac gcggagggct tcgagctact cgcgacgatc
    22681 cccgtgggcc agagggcctg gggcctcgcc gtcactccgg acggccggaa ggtttacgcc
    22741 gccaacagcc tctccaacga cgtgtccgtc atagacacct cgacgaaccg cgtcgtcaag
    22801 accgtcaagg ccggcgacgg cccctggggc atagccgtcg gccgctgagg ctgcgggccg
    22861 aatgccaccg cgattacccg gccggccggg ctcgcgcccg cgcccccacg cgtgttatta
    22921 tccgcccgcc ttttgtcagg caagggattg agagaccaaa ggccccgcgg gcctcattac
    22981 gccgcaaagg ccggcgcccg ctctccttcc gatctcggca aactccccgt tcgtcataga
    23041 gcttcattgt tcaaccgtct gaggtaaacc cccaatgcct tcgccctcgc acgcaggaac
    23101 gcgcgcgccc atgagagcgc gcctcgcctt cgccctactg ctcgccgccg cactgctttc
    23161 gggcgcggcc gcgctcgact tcactcgcgg cgctcgcgca agggaggacg gccccgccgc
    23221 ggccgcggcg cccgcgggcc gggcggcccg gctgaaggcg ctcgacgact acggccgcgc
    23281 gccgatgggc ttcgaggcga acacaggcca agtcgaaggc cccgttgact tcgtagcgca
    23341 gggcatcggc tacacgctct tcctgacgcc ctctgaggcc gtcttcgccc tgcgcagcgc
    23401 ggagacgaag cccgacggga agaaggccgc cgccacggcg ggcgacgcgc gcgcggagca
    23461 cccggtcgcc gccgagggcg cgggctaccg cgtcctccgc atgaagctcg tcggcgcgtc
    23521 cgcgccctcg gcggtctcgg gcgagggcat tcagccgggc aggcgcaact acttcgtcgg
    23581 aggcgacccg gcgcgctggc gcacgaacgt ccccgtctat tccaaggcca ggtacgcggg
    23641 cgtttacagg ggcgttgacc tcgtctatta cggcaaccag cggcagctcg agtacgactt
    23701 cgaggtcgcg cccggcgcgg acgcccgccc gatacggctc aagttcgagg gcgccgacgc
    23761 ggcgaagatt gatgacgaga gcggagacct cctgctcacg ctcgcgggcg ccgagctggt
    23821 catgcgccgc cccttcatct accagcccgg cgagggcggc gggcgccgcg aggtcgaggg
    23881 gcgctacacc ttgcgcggcc gtaactcggt cggcttcgag gtcggctcct acgacaggac
    23941 gaagccgctc atcattgacc ccgtcctcaa ctactcgacc tacctcggca cgtcctcggc
    24001 cgactacacg aacggcatag ccgttgactc cgccggcaac gcatacgtga ccggcgccac
    24061 agactcgctc tcgttcccca cgacggggca gaccttcgtc tcgcccaact cattcttcgg
    24121 ccaggccttc gtcaccaagc tcaaccctgc ggggacggcg ctcgcctact cgaccgtcgt
    24181 aggcggctcg gactcggacg gcgccaacgc catagccgtt gactcttcgg gcgccgcgta
    24241 tgtgacgggc cgcacctatt cgcgagactt cccactcgtc gcgccgctca agagcaaggg
    24301 gcctttcttc agaaccgcga actcggccgc ctcctgggac aacagggcga cgggcttcga
    24361 gccgcacgtg cagatagtgc agtcggtggc cgtgagccct tcctcgccct cgattctgta
    24421 cgcgggcgga agcggcggcc tccacaagag cacagacggc ggcgcgacgt ggcagaagct
    24481 cgccgcggca ggcgtgacct tcccgacatt cggcacgctc gcagtccacc cgtcgaaccc
    24541 gtccgtcatc tacacggcga acaacaacgc caccttccgc agcacggacg gcggcgcgac
    24601 cttcgccgag gtgccgctca gcgccttcgg cgcggcggcc cgctgcgtcg agttcgaccc
    24661 cacgaactcg tccgtcatat acctctgcat cagcagcggc gtctataaga gcacggacga
    24721 cggcgcgacg tggtcgctcc tgaactccgg cctgacgaac tcgaacgtcc tgtcgctcgc
    24781 cgttgacccg cagacgacca cgacgctcta cgccggcacg ttcggcggcg gcgtcttcaa
    24841 gagcacgaac ggcggcgcct cctggtcgcc cgccaacaac ggcgtctccc cgctctcgac
    24901 gcgcaacgtg agcgccatcg ccgttgaccc gtcctcgccc tcgaccctgt acttcggcac
    24961 gagctacgcc accggcagcg gcgagattta caagagcacg gacggcgccg gcctctgggc
    25021 gccgctcacg aacggcgtcc cgaaggacaa cggcataagc gacatcgtaa ttaaccgcac
    25081 gacgacctcc acgatctacg cggcgacgac gggcggcggg gtgctcaaga ccacgaacgg
    25141 gggagacagt tgggcgcccg ccaacgcggg gctctggaac cccgtagtca cgtcgctcgc
    25201 ggcagacccg acggactcgt cgaagctcta cgccgggacg cagggcgggg cgcgcacaga
    25261 gtcggacgcc ttcgccctga agctctcgcc cgcgggcgac gcgctcgcct actcgaccta
    25321 cgtgggcggc agcgccgacg acgagggccg ggcagtcgcc gttgactccg cgggcaacgc
    25381 ttacctctcg ggccagacct cctcggggaa cttccccctc gcgagccccg tccagagcga
    25441 gctgcgcggc ccggccgacg ccttcgtcac gaagattaac gcggcgggcg acgcctacgt
    25501 cttctcgacc tacttcggcg gcgcgggctt ggacggcgcg cgggccgtgg cgaccgactc
    25561 ggctggcaac gcctacgcgg cgggcaacac ctcttcgagc gaccttcaga ccacgcccgg
    25621 cgcattccag acgaccgcgc ccggcgcggg cttcaccacg tcgctcaacg agggggccga
    25681 cgccttcgtc ctgaaggtcg cagccgcggg ctcgggcgtg gcttacgcga cctacctcgg
    25741 cggcgcgcag ggcggcgagg gcgctaacgg catcgcagtt gactcggcgg gctcggctca
    25801 cgtcgtcggc tcgacctcct cgaacaactt cccggcgcaa aacccgctgc gccccttcgg
    25861 gggcgcggat ggctacatcg cgaagctcaa cgcggccggc tccgcgctcg tctattccag
    25921 ccccctgggc ggtagcggcg acgacgcggc cgcggccgtc gcgctcgacg cggcgggcgc
    25981 cgcgcacgtc accggctgga cgcgctcgct cgacttcccc tcgacgggcg gccacctcaa
    26041 gagccgcagc aacctcttcc gcagcgttga cgcggccgcg acctggcgca acgacaacaa
    26101 tggcgtcagc gccgccctcg tcttcgacat cgaggttgac ccgaccgcgc cgcacgtcat
    26161 ctacgtcggc accagctcgg gcgtcttcaa gagcacgaac ggcgggcgcg cgtggtcgcc
    26221 gtccaataac gggcttgcga accgcaacgt gaggttcata gccgtcaacc cgaagtcgcc
    26281 ctcgaccgtt tacgccggga cgatattcga cggctcgaac cagggcgggc tctacaagag
    26341 cacggacggc ggcgctagct gggccaagac gccgagcacg gcgagcaacg gcgagagttt
    26401 cttcgacgtg tacgccctcg cgctcgaccc cgcgacgccc gacaccatct acctgcactc
    26461 gggcttcagg actttcaaga gcacgacggg cggcgcgagc tgggacggcg ccaacaacgg
    26521 cctgcccggc ggcgccacct ccttcgccgt tgacccctcg aacacgcagg tcgtctatgc
    26581 ctcggtgaac acctccgaag gcggcgtctt caagacgacg gacggcggcg cgaactggtc
    26641 taagacctcc aacgggttga cgacaacctt cgtccaccgc gtcgtcgtca gcccgcagac
    26701 gccctcgacc gtttacgcca cgagcatctt
//
LOCUS       DASPKR010000514         5180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_720779, whole genome shotgun sequence.
ACCESSION   DASPKR010000514 DASPKR010000000
VERSION     DASPKR010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5180)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5180
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_720779"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..234
                     /locus_tag="VD968_13820"
     CDS             <1..234
                     /locus_tag="VD968_13820"
                     /inference="COORDINATES: protein motif:HMM:NF016447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15516.1"
                     /translation="LLTAKSDDVAGRSKIYEAIVKGEADFNPGVPESFNVLVRELQSL
                     CLDVELIDKNAAANGTDGDGTGRPVVPTGGPAE"
     gene            352..4587
                     /gene="rpoC"
                     /locus_tag="VD968_13825"
     CDS             352..4587
                     /gene="rpoC"
                     /locus_tag="VD968_13825"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR02386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HYE15517.1"
                     /translation="MFRFQQEKTQLAPDFEAIRISLASPEKIRHWSHGEVTKPETINY
                     RTFKPERDGLFCARIFGPVTDWECLCGKYKRMKHRGVICDKCGVEVTQAKVRRERLGH
                     IELASPCSHVWFFKGLPSRIGHLLDIPLRELEKVLYFESYIVIDPGDAPVKERELLTD
                     ERFRELTRDFPGQFVARMGAEAIKELLTMVNIEELSQELRTRMKEETSQQKKLKFSKR
                     LKVVTSFLKSGNRPDWMILDVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNR
                     LKKLMELRAPEVIVRNEKRMLQEAVDALFDNGRRGRVLRGVNNRPLKSLSDTLKGKQG
                     RFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYNQLEKQGYAATI
                     KQAREMVDRQEPVVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPVLVEGKAIKIHPL
                     VCTAFNADFDGDQMAVHIPLSPEAQIEAAVLMLASNNILSPANGQPIAVPSQDIVLGC
                     YYLTRDRAGLKGEGRVFSSTDEVLLALDAKEVETQTPIKLRISGDLIDLTQEHDTQDV
                     MRAAVQENVRRVINTTVGRVIFNDQIAEGLPFINGTLKKKGLQSLVNYTHLRLGHDMT
                     VKMLDDLKNLGFLYATKAGISIGIDDLVTPDAKRTLVGQADRDVIEVEKQYRDGVITN
                     GERYNKVIAIWSEVTDRVAKEMFLAMDAREKANNELNPILIMSDSGARGTAQQIRQLA
                     GMRGLMAKPSGEIIETPIRSNFREGLNVLQYFISTHGARKGLADTALKTADSGYLTRR
                     LVDVAQDVIISEPDCGTLKGISSTAIVEGGEEIESLRDRIVGRTALEDVIDPVEGRTI
                     VAMNEEINEDLAAEIQRSGVQRVRIRSVLTCESRRGVCIKCYGRNLATGRPVDIGEAV
                     GVIAAQSIGEPGTQLTMRTFHIGGTARLEESSKHEARMDGTIKYIELNVVKNRRGEII
                     AMNRNGALIILDERGREVARHQIVYGAHIHVENGARVKEDQLLATWDPFTFAILTEVA
                     GTVKFQDLKEGVTVDEEVDEVTGQSRLVVKDSPDEKRQPRLEIRSGSNKVLKTYQMPV
                     RANLMAHDGAAVEPGDVIAKIPRETTKTKDITGGLPRVVELFEARKPRETAVMSEIDG
                     TVTLGAISKGKRRLIITGDDGEQREYDIPRGTHINVQEGDRVRAGEALMDGPLNPHDI
                     LRVLGMNRLQEYLTNEIQEVYRLQGVNINDKHIEVIVRQMLRWVKITDVGDTDFLLDE
                     QVDRFRFADENARVVADGGEPAKAEPLLLGITKASLSTDSFISAASFQETTRVLTEAA
                     ISGRVDYLRGLKENVIMGRLIPAGTGMEFYRNVRVERDTTAEQAREEQAIESLSDILG
                     GVEPPPVPTTVRPVPATGDGDAEDEAADEGDDE"
     gene            4936..>5180
                     /locus_tag="VD968_13830"
     CDS             4936..>5180
                     /locus_tag="VD968_13830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15518.1"
                     /translation="MKSLMSFLLLAAFMMLGAENSFACTCAPVGAAAEELERAAAVFS
                     GKVVEIKRHKQSGDLFAEVEVVFRVKRAWKGADGRTV"
BASE COUNT         1032 a         1708 c         1635 g          805 t
ORIGIN      
        1 ctgctaaccg cgaagtcgga cgacgtggcc ggccgctcga agatttacga ggccatcgtc
       61 aagggcgagg ccgacttcaa ccccggcgtg ccggagtcct tcaacgtgct cgtgcgcgag
      121 cttcagtcgc tctgcctcga cgtggagctg atagacaaga acgcggccgc caacgggacg
      181 gacggcgacg gcacgggccg ccccgtcgtc cccaccggcg gccccgccga gtgagcgagt
      241 gcagaagtcg gagtgcggag tgctgaatta aaggcaatct gttaattcac cgctccgcac
      301 tccgcattca tcatttttta gtaacggttt actgcctacg gagaaattac cgtgttcaga
      361 ttccagcaag agaagacgca gctcgcgccc gacttcgagg ccatacgcat ctcgctcgcc
      421 tcgcccgaga agatccgcca ctggtcgcac ggcgaggtga cgaagccgga gaccatcaac
      481 taccgcacgt tcaagccgga gcgcgacggc ctcttctgcg cgcgcatatt cggccccgtc
      541 accgactggg agtgcctgtg cggcaagtac aagaggatga agcaccgcgg cgtcatatgc
      601 gacaagtgcg gcgtcgaggt cacgcaggcg aaggtgcgcc gcgagcgcct cggccacatc
      661 gagctcgcct ccccctgctc ccacgtctgg ttcttcaagg gcctgccctc gcgcatcggc
      721 cacctgctcg acataccctt gcgcgagctg gagaaggttc tctatttcga gtcctacatc
      781 gtcattgacc ccggcgacgc gccggtcaag gagcgagagc tgctcacgga cgagcgcttc
      841 cgcgaattga cgcgcgactt ccccggtcag ttcgtcgcgc gcatgggcgc cgaggcgatc
      901 aaagagcttc tgacgatggt aaacatcgag gagctgtccc aggaactccg cacgcgcatg
      961 aaggaggaga cctcgcagca gaagaagctg aagttctcca agcgcctgaa ggtcgtcacc
     1021 tcgttcctca agtcgggcaa ccgccccgac tggatgatcc tcgacgttat cccggtcatc
     1081 ccgcccgagc ttcggcccct ggtgccgctc gacggcgggc gcttcgccac gtcggacttg
     1141 aacgacctct accgccgcgt catcaaccgc aacaaccgcc tgaagaagct gatggagttg
     1201 cgcgcgcccg aggtcattgt gcgcaacgag aagcgcatgc tccaggaggc cgttgacgcg
     1261 ctgttcgaca acggcaggcg tgggagggtg cttcgcggcg tcaacaaccg ccccttgaaa
     1321 tcgctctccg acaccctgaa gggcaagcag ggccgcttcc gccagaatct tctcggcaag
     1381 cgcgttgact actcgggccg ctccgtcatc gtcgtcgggc cggagctgaa gctacaccag
     1441 tgcggcctgc cgaagaagat ggctttggag ctgttcaagc cgttcatcta taaccagctc
     1501 gaaaagcagg gctacgcggc gacgattaag caggcgcgcg agatggttga ccgccaggag
     1561 ccggtcgtct gggacatcct cgaagaggtc atccgcgagc acccggttct tttaaaccgc
     1621 gccccgactc tgcaccgcct cggcatacag gctttcgagc cggtgctcgt agagggcaag
     1681 gccatcaaga ttcacccgct cgtctgcacg gccttcaacg cagacttcga cggcgaccag
     1741 atggccgtcc acatccccct ctcgccggag gcgcagatag aggcggccgt gctgatgttg
     1801 gcttccaaca acatcctctc gcccgcgaac ggccagccca tcgccgtccc cagccaggac
     1861 atcgttctcg gctgctacta cctgacgcgc gaccgcgcgg gcctgaaggg cgagggccgg
     1921 gtcttctcgt ccaccgacga ggttctgctc gcgcttgacg cgaaggaggt ggagacgcag
     1981 acgcccatca agctgcgcat ctcgggcgac ctcattgacc tgacgcagga gcacgacacg
     2041 caggacgtta tgcgcgccgc cgtgcaggag aacgtccgcc gcgtcatcaa caccacggtc
     2101 ggccgcgtca tcttcaacga ccagatagcc gagggcctgc ccttcatcaa cggcacgctc
     2161 aagaagaagg gcctgcagtc gctcgtgaac tacacgcacc tgcgcctcgg ccacgacatg
     2221 acggtcaaga tgctcgacga cctgaaaaac ctcgggttcc tctacgcgac gaaggccggc
     2281 atctccatcg gcatagacga cctggtcacg cccgacgcca agcgcacgct ggtcgggcag
     2341 gccgaccgcg acgtcataga ggtcgagaag cagtaccgcg acggcgtcat caccaacggc
     2401 gagcgctaca acaaggtcat cgccatctgg tctgaggtca cggatcgcgt cgccaaggag
     2461 atgttcctag cgatggacgc gcgcgagaag gccaacaacg agctgaaccc gatcctcatc
     2521 atgagcgact cgggcgcgcg cggcaccgcg cagcagatcc gccagctcgc cgggatgcgc
     2581 ggactgatgg ctaagccctc gggcgagatc atcgagacgc ctatccgctc gaacttccgc
     2641 gagggcttaa acgtcctaca gtacttcatc tcgacgcacg gcgcccgcaa gggtctcgcc
     2701 gacacggccc tgaagaccgc cgactcgggc tacctcacgc gccggctcgt tgacgtggcg
     2761 caggacgtta tcatcagtga gcccgactgc ggaacgctga agggcatctc gtccacggcc
     2821 atcgtcgagg gcggcgagga gatcgaatcc ttgcgcgacc gcatcgtcgg ccgcacggcg
     2881 ctcgaggacg tgattgaccc cgtcgagggg cgcaccatcg tcgccatgaa cgaggagatt
     2941 aacgaagacc tcgcggccga gattcagcgc tcgggcgtcc agcgcgtccg catccgctcg
     3001 gtcttgacct gcgagtcccg gcgcggcgtc tgcatcaagt gttacggccg caacctcgcc
     3061 accgggaggc cggtggacat tggcgaggcc gtcggcgtca tcgccgcgca gtcaatcggc
     3121 gagcccggca cgcagctcac catgcgcacg ttccacatag gcggcacggc ccgcctcgag
     3181 gagtcctcga agcacgaggc gcgcatggac ggcacgatca agtacataga gttgaacgtg
     3241 gtgaagaacc gccgcggcga gataatcgcc atgaaccgca acggcgcgct catcatcctc
     3301 gacgagcgcg gccgcgaggt ggcgcgccac cagatagttt acggcgcgca catacacgtc
     3361 gagaacggcg cgcgcgtcaa ggaggatcag ctcctcgcca cctgggaccc gttcaccttc
     3421 gccatcctga ccgaggtggc cggcaccgtg aagttccagg acttgaagga gggcgtcacg
     3481 gttgacgagg aggtggacga ggtcacgggc cagtcgcgcc tggtcgtcaa ggactcgccc
     3541 gacgagaagc gccagccgcg gctcgaaatc cgctcgggct cgaacaaggt tctgaagacc
     3601 taccagatgc ccgtgcgggc gaacctcatg gcgcacgacg gcgcggccgt cgagcccggc
     3661 gacgtcatcg ccaagatacc gcgcgagacc acgaagacga aggacatcac gggcggcctg
     3721 ccgcgcgtcg tcgagctctt cgaggcgcgc aagcccagag agactgcggt gatgtcggag
     3781 atagacggca ccgtgacgct cggcgccatc tcgaagggca agcgccgcct gattattacg
     3841 ggcgacgacg gcgagcagcg cgagtacgac atcccacgcg gcacgcacat caacgtgcag
     3901 gagggcgacc gcgtgcgcgc tggcgaggcg ctgatggacg gccccctgaa ccctcacgac
     3961 atactgcgcg tgctcggcat gaaccgcctc caggagtacc tgacgaacga gattcaggag
     4021 gtctatcgcc tccagggcgt caacatcaac gacaagcaca tcgaggtcat cgtccggcag
     4081 atgctccgct gggtgaagat aacggacgtg ggcgacacag acttcctgct cgacgagcag
     4141 gttgaccgct tccgcttcgc cgacgagaac gcgcgcgtcg tcgcagacgg cggcgagccg
     4201 gcgaaggccg agccgcttct cctcggcatc acgaaggcgt cgctctcgac cgactccttc
     4261 atctcggcgg cctccttcca ggagacgacg agggtcttga ccgaggcggc catatcgggg
     4321 cgcgttgact acctgcgcgg cctcaaggag aacgtcatca tgggccggct gataccggct
     4381 gggacgggca tggagttcta ccgcaacgtc cgcgtcgagc gcgacaccac ggccgagcag
     4441 gcgcgggagg agcaggcgat tgaaagcctc tccgacatcc tcggcggcgt cgagcccccg
     4501 cccgtcccaa ccaccgtccg acccgtcccc gccaccggcg acggcgacgc ggaggacgaa
     4561 gcggcggacg aaggcgacga cgagtaaccc gcaaatacaa cctaaacaaa cagaccggcg
     4621 caggctgaag ggcctcgccg gtctgtttac gttcccccgc gggcgaggag ctgaccctcg
     4681 ggttgcccgt catacacatc agaaaggttt tgctcggccg tattgaggtg gccgtggcta
     4741 atgtatttta cgcggacggg acgaactgga agtcgcgccg cctgattagg cgcgcataag
     4801 agaccgaacc cgccgccgag cctccccggc ctgatgagcg ggttgccggc gcgccgggcg
     4861 caatatttcg cccgcgagtg cgttcagtgt cgggaggctc aacagcctac cgacactgaa
     4921 aacacaggag gtcgcatgaa aagtctgatg tctttcctgt tgcttgccgc cttcatgatg
     4981 ctcggcgccg agaacagctt cgcttgcacg tgcgcgcccg taggcgccgc cgccgaggag
     5041 cttgagcggg ccgccgccgt cttctcgggt aaggtcgtcg agataaaaag gcataagcag
     5101 tcgggcgatt tattcgccga agtcgaagtt gtgttcaggg tgaagagggc ttggaagggg
     5161 gccgacggaa gaaccgtcag
//
LOCUS       DASPKR010000515         2773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_334520, whole genome shotgun sequence.
ACCESSION   DASPKR010000515 DASPKR010000000
VERSION     DASPKR010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2773)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2773
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334520"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1017)
                     /locus_tag="VD968_13835"
     CDS             complement(<1..1017)
                     /locus_tag="VD968_13835"
                     /inference="COORDINATES: protein motif:HMM:NF020076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT domain-containing protein"
                     /protein_id="HYE15519.1"
                     /translation="MRSRLSPLSVSARKFLIVITLAAATAALVTLTAGAQEPGEKAAP
                     PPEPSTPGSLQAVGPDGKPRGLCPLKRTDVRADVAGFLARVVVTQEFENPFDDKIEAV
                     YTFPLPQAAAVDDMTMRVGERTVRGKILRREQAQAVYEAARAAGQVAALLDQERPNIF
                     TQSVANISPGERVTVTISYVETLKYEDGTYEFSFPTVVGPRYVPGNATAGPQSGGGRL
                     PDTDRVPDASRITPHVAAAGTRTGHDISISVSLDAGVPIERLGSASHEIEVERPTPAS
                     ARVRLKNLTAIPNKDFVLRYDVAGRRISDAVLAHRGERGGYFTLILQPPDRVTAEDVT
                     PKELV"
     gene            complement(1210..1872)
                     /locus_tag="VD968_13840"
     CDS             complement(1210..1872)
                     /locus_tag="VD968_13840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15520.1"
                     /translation="MKRAKVFAFLCALWLACAPTLAAPAGEERVRPAGEVVVILSEQF
                     LNSVLEEVAAQPEPPSFPLSRGREGKKCADVIRLVPESGGVRTSVKFRDGAIAAPVAF
                     RGTYEAALLGCVSFEGWADTSFRLEFDQSRQALLARLTVREVKLKNVPSMMGGGLTGL
                     VQDAIDARVNPVEILRAEQLGVRLPSPPGRELRLRAREVRHEVAGPELRLRIAYEIVQ
                     AR"
     gene            complement(1882..>2773)
                     /locus_tag="VD968_13845"
     CDS             complement(1882..>2773)
                     /locus_tag="VD968_13845"
                     /inference="COORDINATES: protein motif:HMM:TIGR00393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HYE15521.1"
                     /translation="EVERAVSLLSACRGKVVLVGVGKSGNVAQKIAATLTSTGTVSVF
                     LHPSDALHGGIGLVAADDVVVVLSNSGETAEIVELLPYLQHRRAPVVAIVGNTDSTLA
                     RRADVVLDASVEQEACPLNLAPTTSTTVALAIGDALAMTLMRVKRLTPEDFALNHPGG
                     RLGKRLTLKVSDLMHGGDDNPTVPVGASLLEVLRAITGGGLGAVNVVGAGGRLEGIIT
                     DGDVRRAIERAGLKGLESLTGEGLMTRSPVVAAPDMLAHAALQLMENRPSQISVLPVV
                     EPGGRCVGLLRLHDIVRSGL"
BASE COUNT          421 a          928 c          990 g          434 t
ORIGIN      
        1 gacgagctct ttgggcgtca cgtcctccgc ggtgacgcgg tcgggcggct ggagtatgag
       61 cgtgaagtag ccgccgcgct cgcccctgtg cgcgagcacc gcgtcggaga tgcgccggcc
      121 ggccacgtcg tagcgcagca cgaagtcctt gttcgggatg gccgtcaaat tcttcaggcg
      181 cacgcgcgcg gaggccggcg tcggccgctc gacttcgatt tcgtgcgagg ccgaccccag
      241 cctctctatc ggcacccctg cgtccaggga gacgcttatc gagatgtcgt ggccggtgcg
      301 tgtgccggcc gcggcgacgt ggggcgtgat gcgcgaggcg tcggggacgc ggtcagtgtc
      361 tggaagcctt ccgccgcccg actgcgggcc ggccgtcgcg ttgccgggga catagcgcgg
      421 gccgacgacc gtggggaagg agaactcgta cgtgccgtcc tcgtacttga gcgtctctac
      481 gtagctgatg gtgacggtga cgcgctcgcc cggcgagatg ttcgcaaccg actgagtgaa
      541 gatgttcggg cgctcctggt cgagcagggc ggcgacctgc ccggctgcgc gcgccgcctc
      601 atagacggcc tgcgcctgct cgcgccggag aatcttcccg cggacggttc gctcgccgac
      661 gcgcatagtc atgtcgtcaa cggccgcggc ctgcggcaga gggaacgtat agacggcctc
      721 tatcttgtca tcgaaggggt tctcgaactc ctgcgtgacg acgacgcggg cgaggaagcc
      781 ggccacgtcg gcgcgaacgt ccgtgcgctt gagggggcag agcccgcgcg gcttgccgtc
      841 ggggccgacg gcctggagcg agcccggcgt cgagggctcg ggcggcggcg cggccttctc
      901 gcctggctcc tgcgcgccgg cagtcagcgt gacgagagcg gcggtggccg ctgcgagggt
      961 gattacgatt agaaattttc gggccgagac tgagagcgga gagagtcgcg agcgcatacc
     1021 ttcctcctga gcatgcacga gtggtgagac cggcgccgcg tgggcgcccg gctgaaagtg
     1081 tgggagctac gccgttagag agcggcgtcc agaattttgg ttgtccgagc agttcgcggg
     1141 acgaaaaaca agagagggtt gatgacggcg ccgccgtcat caaccctctg tctcccgaac
     1201 ttaaattctt tatcgggctt gtactatctc gtaagcgatg cggaggcgaa gctccgggcc
     1261 cgcgacttcg tggcggactt cgcgggcgcg caggcgaagc tcgcggccgg gcggggaggg
     1321 cagccgcacg cccaactgct ctgcgcggag aatctcgacg gggttcacgc gcgcgtcaat
     1381 cgcgtcctgc acgaggccag tcagcccgcc gcccatcatc gaaggcacgt tcttcagctt
     1441 cacctcgcgc acggtcaggc gcgcgaggag cgcctgcctc gactggtcga actcgaggcg
     1501 gaaggacgtg tcggcccaac cctcgaagct cacgcacccc aggagcgccg cctcgtaagt
     1561 cccccggaac gcgacgggcg cggctatggc gccgtcgcga aacttaacgg aagtccgcac
     1621 gccgcccgac tctggcacga ggcgtataac gtcggcgcac ttcttcccct cccgcccgcg
     1681 cgagagcggg aagctcggcg gctccggctg cgctgcgacc tcttcgagga cggagttcaa
     1741 aaactgctcg ctcaagatca cgacgacctc gcccgccggc ctcacgcgct cctcgccggc
     1801 cggcgcggcg agcgtcggcg cgcacgcgag ccagagcgcg cacaagaaag caaagacctt
     1861 cgctcttttc ataatctcgg ttcagagccc gctgcggacg atgtcgtgca ggcgcaggag
     1921 gccgacgcag cggccgcccg gctcgacgac ggggaggact gagatttggg aggggcggtt
     1981 ctccatgagc tgtagcgcgg cgtgcgcgag catgtcgggc gcggcgacta cgggcgagcg
     2041 cgtcataagg ccctcgcccg tgaggctctc caaccccttg agcccggcgc gctcaatcgc
     2101 gcggcgcacg tcgccgtccg tgatgatgcc ctcgaggcgg cccccggcgc ccacgacgtt
     2161 cacggcgccc aggcccccgc cggttatcgc ccgcagcact tccagcaggc tcgcgccgac
     2221 cggcacggtc gggttatcgt ccccgccgtg catgaggtct gagaccttga gcgtcaggcg
     2281 cttccccaaa cgcccgccgg ggtggttgag cgcgaagtct tcgggcgtca gacgcttcac
     2341 gcgcatcagc gtcatggcga gcgcgtcgcc tatggcgagc gcgacggtcg tgctcgtcgt
     2401 cggcgcgagg ttcagcgggc aggcctcctg ctcgaccgag gcgtcgagca ccacgtcggc
     2461 gcggcgcgcg agcgtggagt cggtgttgcc gactatggcg acgacgggcg cgcggcggtg
     2521 ttggaggtat ggcagcagct cgactatctc ggccgtctcg ccgctgttgc tgagcacgac
     2581 gaccacgtcg tccgccgcga ctagcccgat gccgccgtgc agcgcgtccg aggggtgcag
     2641 gaagaccgag acggtacccg tgctcgtcag cgtcgcggct atcttctggg cgacgttgcc
     2701 ggacttgccc acgccgacga gcacgacctt gccgcggcag gccgagagca gcgagacggc
     2761 tcgctcgacc tcc
//
LOCUS       DASPKR010000516         3299 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_334541, whole genome shotgun sequence.
ACCESSION   DASPKR010000516 DASPKR010000000
VERSION     DASPKR010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3299)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3299
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334541"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..299
                     /locus_tag="VD968_13850"
     CDS             <1..299
                     /locus_tag="VD968_13850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15522.1"
                     /translation="GGPPSQSSAAAAVGRKKIPPSETNAEIFYYKKQMDAHTPMVIVL
                     LDGEEVEGTIEWYDRNALKVNRKGAPNIMLLKHNIKYMFKAEDREGGGDDGDDD"
     gene            413..1480
                     /gene="pdxA"
                     /locus_tag="VD968_13855"
     CDS             413..1480
                     /gene="pdxA"
                     /locus_tag="VD968_13855"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: protein motif:HMM:TIGR00557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HYE15523.1"
                     /translation="MTDASPNSYGAASPGEGRGRRPRIGITMGDPAGIGPEVVLKAVA
                     EPEVLRACSPVIVGDAQLLAHTARTLDLRCGYDIVRRGEQIPDGDRGPVIYHLDNVNA
                     SIEPGVESGVAGRAAAEYIEAAVELCGSGDVDAISTAPINKRALFLGGYSFPGHTEFL
                     AHLTGATECAMAFVASNLRVVLISTHVPLAEAIRLVEKERIVRVVRLTDRELKRWGIA
                     APRIAVAALNPHGAEGGLFGVEEAAEIVPAVEACRAEGVDAAGPYSADTVFLRASRGE
                     FDAVVSCYHDQAMIPVKCLSFGEAVNVTLGLPFIRTSVDHGTAFDIAGRGVAEHSSMV
                     AAIMLAARLALADESGRAVEV"
     gene            1498..1905
                     /locus_tag="VD968_13860"
     CDS             1498..1905
                     /locus_tag="VD968_13860"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE15524.1"
                     /translation="MSAQNSPSRRILVADDDPAILRLVTAIVEKEGYEVVPARDGREA
                     YKHLQSGSDFVACVFDVMMPHIQGPELVRYMKTERRLMKIPVMMMTAEQNPKLSSDSF
                     AAGAVVFLPKPFTTSQLQIMLRMLISKSPGGQQ"
     gene            1926..2582
                     /locus_tag="VD968_13865"
     CDS             1926..2582
                     /locus_tag="VD968_13865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15525.1"
                     /translation="MGKPEPSAVRRAALLFVLAALFAQVAPAQSGRRKPGSPPVPGQT
                     TEAKPAPTPAKATAVLVSFAVMQSDDVIFDFRMKDGVIGSFVERLEGSAAVEVRRGGR
                     GNRKDAHDLAKKSDDAHVILFQIEEEGAGMGGVGRADARLLLIRTYVYAPKTGDLKFT
                     DTIYQRPYRSTTEVGGVRVPAPSKRVERYPSQRELEQAGRDAADRLLSRFDITLPPER
                     "
     gene            2579..>3299
                     /locus_tag="VD968_13870"
     CDS             2579..>3299
                     /locus_tag="VD968_13870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15526.1"
                     /translation="MKAEARRRKAEGGRQSGASRRVLTAFCLLLSAFCFLAAAAAAQK
                     RPKPALKESDARRAVAEARGLALRTGAVRVLEVSAAGAAPVTVRAEVTLGLRLARIAD
                     ERAGGGFLAPKRWRAVELRVGDREWEDFDILAGALGAERVEAARRSVEEAVKEFEARV
                     AAAGKGATVEPLTRGALTIKQLSALGSSAVAEVSVEATFRLERGAGRRWQAAEVSVAG
                     EPGVELAALAESINTLKAARAR"
BASE COUNT          537 a         1110 c         1183 g          469 t
ORIGIN      
        1 cgggcggccc cccgtcccag tcgtcggccg cggccgccgt cggccgcaag aaaatcccgc
       61 cgtccgagac gaacgccgag attttctact acaagaaaca gatggacgcg cacacgccga
      121 tggtcatcgt cctgctcgac ggcgaggagg tcgaaggcac catcgagtgg tacgaccgca
      181 acgccctgaa ggtcaatcgc aagggcgcgc ccaacatcat gctgctcaag cacaacatca
      241 agtacatgtt taaggccgag gaccgcgagg gcggcggcga tgacggcgac gacgactgac
      301 gcgcgcgggc gcgcagcgtc ttacggggcg cgccctcccc aacgcgcgcg gccgctgccg
      361 caggaagccc tccacctccc gccctcacag cggttcacgg cgtttggctc gaatgactga
      421 cgcttcaccg aactcttacg gcgcggcctc gcccggcgag gggcgcggcc gccgcccgcg
      481 catcggcata acgatgggcg acccggccgg aatcggcccc gaggtagtcc tcaaggccgt
      541 ggccgagccg gaggtgctgc gcgcgtgctc gcccgtcatc gtcggcgacg cgcagctcct
      601 cgcgcacact gcgcgcacgc tcgacctccg ttgcggctac gacatcgtgc gccgcggcga
      661 gcagatcccc gacggcgacc gcggtcccgt catataccac ctcgacaacg tgaacgcttc
      721 catcgagccg ggcgtcgagt cgggcgtcgc gggccgcgcc gccgccgagt acatcgaggc
      781 ggccgtagag ctctgcggct cgggcgacgt ggacgctatc tcgaccgccc ccataaacaa
      841 gcgcgccctc ttcctcggcg gctacagctt ccccggccac acggagttcc tcgcgcacct
      901 cacgggcgcg actgagtgcg cgatggcctt cgtggcgtcg aacctgcggg tcgtgctcat
      961 ctcgacgcat gtgccgctgg ccgaggcgat aaggctggtg gagaaggaga ggatcgtgcg
     1021 cgtcgtgcga ctgaccgaca gggaactcaa gcgctggggc atcgccgcgc cgcgcatcgc
     1081 cgtcgcagcc ttgaacccgc acggggccga gggcgggctg ttcggcgtcg aggaggcggc
     1141 ggagatagtg ccggccgtgg aggcttgccg cgccgagggc gttgacgccg ccgggcctta
     1201 ctcggccgac acggtcttcc tgcgcgcctc gcgcggcgag ttcgacgcgg tcgtttcgtg
     1261 ttaccatgac caggcgatga tcccggtgaa gtgcctctcg ttcggcgagg ccgtcaacgt
     1321 caccctgggg ctgccgttca tacgcacgtc cgtggatcac ggcacggcct tcgacatcgc
     1381 gggccgcggc gtggccgagc actcgagcat ggtcgccgca atcatgctcg ccgcgcgcct
     1441 cgcgctggcg gacgagagcg gccgggccgt ggaggtttag cggaggtttt cataaaggtg
     1501 tctgcgcaga actcgccctc ccgccgcata ctcgtcgccg acgacgaccc ggccatactg
     1561 cggctcgtga cggccatcgt ggagaaggag ggttacgagg tcgtgccggc gcgcgacggg
     1621 cgcgaggctt acaagcactt gcagtccggc agcgacttcg tggcctgcgt cttcgacgtg
     1681 atgatgccgc acatacaggg gccggagctc gtccgctaca tgaagacgga gcggcggctg
     1741 atgaaaatcc cggtgatgat gatgacggcc gagcagaacc ccaaactctc ctcggacagc
     1801 ttcgccgccg gcgccgtcgt cttcctcccc aagcccttca cgacctccca gctacagatc
     1861 atgctgcgga tgctcataag caagtcgccg ggcggccagc aatagaagtc aaggagtaaa
     1921 acccgatggg caagccagaa ccgtcggcgg tgcggcgcgc ggcgctgctc ttcgtgctcg
     1981 cggccctctt cgcgcaagtc gcgcccgcgc agtcggggcg gcgcaagccg ggctcgccgc
     2041 ccgtcccggg ccagacgact gaggcgaagc ccgccccgac gccagcgaag gcgacggccg
     2101 tactggtcag cttcgccgtc atgcagtcgg acgacgtgat attcgacttc aggatgaagg
     2161 acggcgtcat cgggagtttc gtcgagcggc tagaggggtc ggcggccgtc gaggtcaggc
     2221 gcggcgggcg cggcaaccgc aaggacgcgc acgacctcgc gaagaagagc gacgacgcgc
     2281 acgtcatact cttccagatc gaagaggagg gcgcggggat gggcggggtc gggcgcgctg
     2341 acgcccgcct actgctaatt agaacctacg tgtacgcgcc gaagacgggc gaccttaagt
     2401 tcaccgacac catctaccag cggccctacc gctcgacgac ggaggtgggc ggcgtgcgcg
     2461 tccccgcccc gagcaagcgc gtcgagcgct acccgtcgca gcgcgagctg gagcaggccg
     2521 ggcgcgacgc cgccgaccgc ctgctctcgc gattcgacat aacgctcccg cccgaaagat
     2581 gaaggcagag gccagaaggc ggaaggcgga aggcggaagg cagtcaggag cctctcggcg
     2641 cgtcctgact gccttctgcc tactgctttc tgccttctgt tttcttgcgg cggccgccgc
     2701 agcgcagaag cggccgaagc cggcgctcaa ggagagcgac gcacgtcgcg ccgtcgccga
     2761 ggcgcgcggg ctcgccttga ggactggcgc cgtgcgcgtg ctcgaagtct cggcggcggg
     2821 cgccgcgccg gtgacggtga gggctgaggt gacgctgggc ctgcggctcg cgaggatagc
     2881 ggacgagcgc gcaggcgggg gctttctcgc gccgaaacgc tggcgcgcgg tcgagcttcg
     2941 cgtgggcgac cgcgagtggg aggacttcga catacttgcc ggggcgctcg gggccgagcg
     3001 cgtcgaggcg gcgcggcgct cggtcgaaga ggccgtcaag gagttcgagg cgagagtggc
     3061 cgccgcaggg aagggcgcga cggtcgagcc gctcacgcgc ggcgcgctca cgataaagca
     3121 gctatcggcg ctcggctcgt cggccgtggc ggaggtctcg gtggaggcga ctttccgcct
     3181 ggagaggggc gcggggcgta ggtggcaggc ggcggaagtc tccgtcgcgg gcgagccggg
     3241 cgttgagctt gcggcgctag cggagtcaat aaacactctc aaggcggcgc gcgcccgcg
//
LOCUS       DASPKR010000517         5247 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1111971, whole genome shotgun sequence.
ACCESSION   DASPKR010000517 DASPKR010000000
VERSION     DASPKR010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5247)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5247
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1111971"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1486
                     /locus_tag="VD968_13875"
     CDS             <1..1486
                     /locus_tag="VD968_13875"
                     /inference="COORDINATES: protein motif:HMM:NF044379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HYE15527.1"
                     /translation="TRFVLRKALEAHLPAIVVVNKIDRQDARPQEVVNEIYDLFIDLD
                     ANDEQIDFPVLYAVARDGVAKKELSDESRSLRPLFEEIVRTIPPPRELRGDALQLLVA
                     NLDYNEYVGRLAIGRIFSGEIAAGETVSVVKRDRSAQKVKIKELYAFEGLKRQSVERA
                     RFGEIVALAGIEGIEIGETVADADDPKPLPVIAVDEPTISMIFSVNNSPFAGTEGKYV
                     TSRQLKERLDREVLGNVAIRVEETDSPDQFKVSGRGELQLAILIEMMRREGYELQVSK
                     PEVITRKEEGRLLEPIELVVIDCPEEFIGVVTEAMGRRKGQMTKMVNHGTGRVRLEFE
                     TPSRGLIGFRGEFLTETKGTGLLNTIFLRWGDWLGPMRGRSTGSLVADRAGEATTYAL
                     YNLQERGTMFIRPATRVYEGMIVGENARFVDLDVNIVREKKLTNMLASTADEAMRLVP
                     VKELSLEQALEFIADDELVEVTPKSIRLRKRALRANERPKKKES"
     gene            complement(1494..2264)
                     /locus_tag="VD968_13880"
     CDS             complement(1494..2264)
                     /locus_tag="VD968_13880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15528.1"
                     /translation="MSAEQPPTVRPSQLAITQMLAEMESKRRRAARRWLLALLAPLAL
                     GIALLAYMSYAVSARYAELKRLNAEVRAEEARLAEVLRRKEESQKQLTSGLSEALADK
                     PPEEKKKILDKLTTNPVVAETIPRVFIHYYEKDPKTRAAQAGRAIQQLGYIVPGSEAL
                     QRVPNDAQVRYFFDGDRDAAQKVADVLGAQGVANVRVLKRGESARPGLIEVWLPPLAK
                     PLAPGGAAVGPTPDTKPDAEKARPEATKPSAPKPYNSP"
     gene            complement(2261..3178)
                     /locus_tag="VD968_13885"
     CDS             complement(2261..3178)
                     /locus_tag="VD968_13885"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003953 - NAD+ nucleosidase activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="toll/interleukin-1 receptor domain-containing
                     protein"
                     /protein_id="HYE15529.1"
                     /translation="MADTTSARPKVFISYSHRDREWLERLQVHLKPLKGALDAWDDTR
                     IVPGSSWREEIHAALAEAKVAILLVSADFVASDFIIAEELPALLKTAAAGGTQILAVV
                     LSPAMLSAIGGLAELQTVNDPKSPLIGMDKARQEQLLLSIAYLVELRLRPQPAPATAA
                     AVTDAAATAITTTAPPAANSDCRDYAAIFDIHIRRERRGMPLAYAAVVATPLFGLALI
                     MGAWLLFDTREGQSAVVPLVAVMALVGFVSLGLSYVLMNKVREKYAAIDSCEFMKSRF
                     DGCERWDAEKLREHVKLALDFLRKGMMRS"
     gene            3352..3555
                     /locus_tag="VD968_13890"
     CDS             3352..3555
                     /locus_tag="VD968_13890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15530.1"
                     /translation="MNERACWNCGHMQEYHTIAGGCSFAREGEGRCDCPRYEDSEYYG
                     EQRKRDTYTLSDRRRLTHRRPGR"
     gene            complement(3560..3730)
                     /locus_tag="VD968_13895"
     CDS             complement(3560..3730)
                     /locus_tag="VD968_13895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15531.1"
                     /translation="MNERRDDTTEPAGESRGRYYYDDATGYEVYKPEEGEGEAAGAPP
                     GEDEAGEANGSA"
     gene            3812..>5247
                     /locus_tag="VD968_13900"
     CDS             3812..>5247
                     /locus_tag="VD968_13900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15532.1"
                     /translation="MHAHTRRRAAAACAVVVSLLLHTSPASARRQAPAKKFELTVDSI
                     MRGPDLVGYEPTGVTWSQDSSRLFFRWKRAGEPRLKEFDTYVVNRDGTGLRKLSEEEA
                     RRTAPPSSGELSKDKTLTVFTDEGDLFLYDHAKGERRQVTRTVEAETNPHFTRDQKGI
                     YFTRQNNLYVMSLDSGSLEQLTDIRAAAAGGDPQARAAGGGAAVTGGAGVQLSASVGP
                     QRGASESQEVLRREERRLLEAVRERAENREEQERRRRERNKRRPFSLPAGQSVANLML
                     SPDGANVIAAVTESAQGSKSTIVPNYVTESAYTEDIPSRTKVGDTQGRSRLGLVSVET
                     GEVKWVDHGQRVEVAPRVQSRTEQNATEQAARERGVEAEAQQQSQQQGQQATSPPPTQ
                     AQQQQGRQQTEAARADVRDRDVQLFQIQWSEDGTRAALLARAADNKDRWVLSLDPATG
                     KTRALARVHDDAWVGGPGAFTLGWLADNR"
BASE COUNT          869 a         1774 c         1797 g          807 t
ORIGIN      
        1 gacgcgcttc gtgctgcgca aggcgctgga ggcgcacctg ccggccatcg tcgtcgtcaa
       61 caagatcgac cgccaggacg cccgcccgca ggaggtggtc aacgaaatct acgacctctt
      121 catcgacctc gacgccaacg acgagcagat agacttcccc gtcctctacg ccgtggcgcg
      181 cgacggcgtg gcgaagaagg agctctccga cgagtcgcgc tcgctgcgcc cgctcttcga
      241 ggagatagtg cgcaccatcc cgccgccgcg cgagctgcgc ggggacgctt tgcagctcct
      301 cgtcgccaac ctcgactaca acgagtacgt cggccgcctc gccatcggcc gcatcttctc
      361 cggcgagatc gcggccggcg agacggtctc ggtcgtcaag cgcgaccgct cggcgcagaa
      421 ggtgaagatc aaggagcttt acgccttcga ggggctgaag cggcagtcgg tcgagcgcgc
      481 gcgcttcggc gagatcgtcg cgctcgccgg catcgagggc atcgagatcg gcgagacggt
      541 cgccgacgcc gacgacccga agccgctgcc cgtcatcgcc gttgacgagc cgaccatctc
      601 gatgatcttc agcgtcaaca actcgccctt cgccggcacc gagggtaagt acgtcacctc
      661 gcgccagctc aaggagcgcc tcgaccgcga ggtgctcggc aacgtcgcca tccgcgtcga
      721 ggagaccgac tcgcccgacc agttcaaggt gtcggggcgg ggcgagttgc agcttgccat
      781 cctcatcgag atgatgcggc gcgagggcta cgagctacag gtctcgaagc ccgaagtcat
      841 cacgcgcaaa gaggaggggc ggctcctgga gccgatagaa ttggtggtga ttgactgccc
      901 cgaagagttc atcggcgtcg tcacggaggc gatggggcgg cgcaaagggc agatgacgaa
      961 gatggtcaac cacgggacgg ggcgcgtccg cctggagttc gagacgccct cgcgcggcct
     1021 catcggcttc cgcggcgagt tcctgacgga gacgaagggg acgggcctcc tcaacacgat
     1081 attcctgcgc tggggcgact ggctcgggcc tatgcgcggg cgctcgacgg gctcgctcgt
     1141 cgcggatcgc gcgggcgagg ccacgaccta cgcgctctac aaccttcagg agcgcgggac
     1201 gatgttcata aggcccgcga cgcgcgtcta tgaggggatg atcgtgggcg agaacgcgcg
     1261 cttcgttgac ctggacgtga acatcgtgcg cgagaagaag ctgacgaaca tgctggcgtc
     1321 cacggccgat gaggccatgc ggctcgtccc cgtcaaggag ctctcgctcg aacaggcgct
     1381 cgagttcata gccgacgacg agctggtcga ggtcacgcct aaatcaatac gccttcgcaa
     1441 gcgcgccctg cgcgccaacg agcggccgaa gaagaaggag tcctgaggaa gggtcagggc
     1501 gaattgtatg gcttaggggc ggacggcttt gtggcctcgg gccgggcttt ttcggcgtcg
     1561 ggcttggtgt cgggcgtagg ccccacggcc gcgccgccgg gcgcgagtgg cttggcgagg
     1621 ggcgggagcc agacctctat gagccccggc cttgccgact cgcccctctt caacacacgg
     1681 acgttcgcca ccccctgagc gccgaggacg tccgcgacct tctgcgccgc gtcgcggtcg
     1741 ccgtcgaaga agtacctcac ctgcgcgtcg ttcggcacgc gctggagcgc ctcgctgccg
     1801 gggacgatgt agccgagctg ctggatggcg cggcccgcct gcgccgcccg cgtcttcggg
     1861 tctttctcgt agtagtgtat gaagacgcgc ggtatcgtct cggccacgac ggggttcgtc
     1921 gtgagcttgt cgagaatctt cttcttctcc tcgggcggct tgtcggcgag cgcctcgctc
     1981 aggcccgagg tcaactgctt ctggctctct tccttcctcc tgagcacttc ggcgagcctc
     2041 gcctcctcgg ccctgacctc ggcgttgagc ctcttgagct cggcgtagcg ggccgacacg
     2101 gcgtaggaca tgtaggcgag gagcgcgatg ccgagcgcga gcggggcgag gagcgcgagc
     2161 agccacctgc gagccgcgcg cctgcgcttt gactccatct cggccagcat ctgcgtgatg
     2221 gctagctggc tgggcctgac cgtaggcggc tgctcggcgc tcatgatctc atcatcccct
     2281 tccgcaggaa gtcgagcgcg agcttgacgt gctccctcag cttctcggcg tcccagcgct
     2341 cgcagccgtc gaagcggctc ttcatgaact cgcaggagtc tatggccgcg tacttctcgc
     2401 gcaccttgtt catgaggacg taggagaggc cgagcgagac gaagccgacg agcgccatca
     2461 cagccacgag cgggacgacg gccgactggc cctcgcgcgt gtcgaacagg agccacgcgc
     2521 ccatgatgag ggcgaggccg aagagcgggg tggcgacgac cgccgcgtag gccaggggca
     2581 tccccctgcg ctcgcgcctg atgtgtatgt cgaagatggc ggcgtagtcg cggcagtcgg
     2641 agtttgcagc ggggggcgcc gtcgtcgtta tcgccgtcgc cgccgcgtcg gtgacggccg
     2701 ccgcagtggc cggcgctggc tgcggcctca gccgcagctc gacgaggtag gcgatcgaaa
     2761 gcagtagctg ctcctgtctg gccttgtcca tgcctatcag cggcgacttg gggtcgttga
     2821 cggtctgtag ttcggccagg cccccgattg ccgagagcat ggcggggctc aggacgacgg
     2881 cgagtatttg cgtgccgccg gccgcggccg tcttcaggag cgcgggcaac tcctcggcga
     2941 tgatgaagtc ggaggcgacg aagtccgcgc tgacgagcag tatggcgacc ttggcctctg
     3001 cgagcgccgc gtgaatctcc tcgcgccagc tcgagcccgg cacaatcctc gtgtcgtccc
     3061 aggcgtcgag cgcgcccttg agcggcttga ggtggacttg caggcgctcc agccactcgc
     3121 ggtctctgtg gctgtagctg atgaagactt tgggtcgcgc gctcgtcgtg tcggccatag
     3181 tcttgaggcg gaagctcggg gggcgatctt actcgctagg cggcgggcat tatatgacag
     3241 ggcggggcgc gcggcgcaaa tttttacgcc cgcccgcgcg ccgcttgaca gcgccgggcg
     3301 cctgccataa gttcgcgcga aacggattcc tgccggcttg aggtgagcga cgtgaacgaa
     3361 agggcttgct ggaactgcgg ccacatgcag gagtaccaca cgattgcggg cgggtgctct
     3421 ttcgcgcgcg agggcgaggg gcgctgcgac tgcccgcgct acgaggacag cgagtattac
     3481 ggcgagcagc gcaagcgcga tacctacacg ctctccgacc ggcgccgcct aacgcacagg
     3541 aggccggggc gctgacgccc taagcactcc cgttcgcctc cccggcttcg tcttcgccgg
     3601 ggggggcgcc tgccgcctcg ccctcgccct cctccggctt atagacttcg tagccggtcg
     3661 cgtcgtcgta gtagtaacgc ccacgcgact cgcccgcggg ttctgttgta tcatctcgcc
     3721 gctcgttcac cgtttcagtc tcccgaaaaa aaatcagcgc acggcccgat tataccgccg
     3781 gcacgcaaag acctacgtgg gggttcgttt gatgcacgca cacacccgcc gccgcgccgc
     3841 agccgcgtgc gcggtcgtcg tctcgcttct actccacacg tcgcccgcct ccgcgcggcg
     3901 gcaggccccg gccaaaaagt tcgagcttac ggttgacagc atcatgcgcg ggcccgacct
     3961 cgtcggctac gagcccacgg gagtcacctg gtcgcaggac agcagccgcc tgttcttccg
     4021 ctggaagcgc gcgggcgagc cgcgcctgaa agagttcgac acctacgtcg taaaccgcga
     4081 cggcacaggg ctgcgcaaac tttccgagga agaagcccgg cgcacggcgc cgccctcttc
     4141 gggcgagctc tcgaaggaca agacgctcac tgtcttcacc gacgagggcg acctgttcct
     4201 ctacgaccac gcgaagggcg agcgcaggca ggtgacgcga acggtcgagg ccgagacgaa
     4261 ccctcacttc acgcgcgacc agaagggcat ctacttcacg cggcagaaca acctctacgt
     4321 tatgtcgctc gacagcggtt cgctcgaaca gctcacggac atacgcgcgg ccgccgcggg
     4381 cggcgacccg caggcccgcg ccgcgggcgg gggcgccgcg gtgacgggcg gcgccggcgt
     4441 ccagttgagc gcttccgtcg gcccgcaacg cggcgcgagc gagagccagg aggtcctgcg
     4501 cagggaggag cgccggctgc tcgaagccgt gcgcgagcgc gccgagaacc gggaggagca
     4561 ggagcgccga cgccgcgagc gcaacaagcg ccgccccttc agcctccccg cgggccagtc
     4621 ggtcgcgaac ctcatgctct cgcccgacgg cgccaacgtc atcgccgccg tcacggagtc
     4681 ggcccagggc tcgaagagca ccatcgtccc gaactacgtc acagagtcgg cctacacgga
     4741 agacataccc tcgcgcacga aggtcggcga cacgcagggg cgctcacggc tcgggctagt
     4801 gtcggtcgag acgggcgagg tcaagtgggt tgaccacggc cagcgcgtcg aagtcgcccc
     4861 gcgcgtacag tcgcgcacgg agcagaacgc gacagagcag gcggcccgcg agcgcggcgt
     4921 cgaggcggaa gcccagcagc aatctcaaca gcagggccag caggcgactt ctccgccgcc
     4981 cacgcaggcg cagcaacagc agggcaggca gcagaccgaa gcggcgcgcg ccgacgtgcg
     5041 cgaccgcgac gtgcagctct tccagataca gtggtctgaa gacggcacgc gcgccgcgct
     5101 gctcgcccgc gcggccgaca acaaagaccg ctgggtcttg tcgctcgacc ccgctacggg
     5161 caagacgcgc gccctcgcgc gcgtccatga cgacgcgtgg gtgggcggcc ccggcgcctt
     5221 cacactgggc tggctcgccg acaaccg
//
LOCUS       DASPKR010000518         8478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_983375, whole genome shotgun sequence.
ACCESSION   DASPKR010000518 DASPKR010000000
VERSION     DASPKR010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8478)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8478
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_983375"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..478
                     /locus_tag="VD968_13905"
     CDS             <1..478
                     /locus_tag="VD968_13905"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYE15533.1"
                     /translation="RSGSLRQSLRHARSFLERGYTALIFPEGTRSMTGQMAEFKSGFA
                     YLALSTRTGILPIYLHGTYEAFPKGSNIIRSRDVGARIGRFLPPEELEELAKGVPKSE
                     AYRLIAALVRHEIENLRDGTRHAFDAGGLRRRWKAERRHAAAGDAHEETELATTGD"
     gene            487..1593
                     /locus_tag="VD968_13910"
     CDS             487..1593
                     /locus_tag="VD968_13910"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYE15534.1"
                     /translation="MPTKRAPRKAAAAKGATKKGAAKTTALARRAQPVTLVTGGTGFL
                     GSHLVRLLVAEGVKNVRVLSTSAPAWLEELGVESVRGSVTSPEDLARAVEGVGEIYHL
                     AGRVARSRDGAHEMYRLHVEGTRLLCEAAARAGVRSVVLASTSGTVAVTDTGDVVPDE
                     DWPTPADIISRWDYYASKVFQERAALENFSGRNQRLVIMNPSLLLGPGDERLSSTKVV
                     LDFIGRKIMTVPKGGLSFVDARDAAQAFYAAMREGRHGERYLLGAVNWTFDKFFGRLE
                     RLTGVSAPFLSLPSRLAVAGSRGLGALYKHWKLAPPVEPVEVEMAEYFWYVDASKARR
                     ELGFAPRDPSETLLDTVNYVRENFLGDSAFKNAG"
     gene            complement(1607..2548)
                     /locus_tag="VD968_13915"
     CDS             complement(1607..2548)
                     /locus_tag="VD968_13915"
                     /inference="COORDINATES: protein motif:HMM:TIGR00147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HYE15535.1"
                     /translation="MLPLIIVNPTSAGGSTREAWPGTASDVRRHFGPFNCAFTEHAGH
                     ASEIAEREARAGRRLIIACGGDGTASEVANGILRSGADAEFAVLPSGTGGDFRRTLRL
                     PAGPAEAARALREGKTRRMDAGRVTYHAEGGGEETRFFLNVASFGMGGDVIRRVKEGS
                     WLAPGGARVLGGRLSFAVAALQATFAFEKPRVRVRLDGGPEARLTVVNFCVANARYFG
                     GGMKVAPLARLDDGELDMVSIGDMSPLSILANSYRVYLGTHLGMQQVRHARARRVEAA
                     PDGGEEVKLEVDGELVGRLPATFEILHAALSVRAPAD"
     gene            complement(2554..3471)
                     /locus_tag="VD968_13920"
     CDS             complement(2554..3471)
                     /locus_tag="VD968_13920"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYE15536.1"
                     /translation="MTHGGRDEAGAREHWPAPTREEMAVLSRKERFAFRLARRMNAGR
                     WKRFWTFCQRTIGAGWIHLATYNILRPHGLEHLESVSHERPLLLVANHRSFFDMYVVS
                     TVLFRRTGWRKRLFFPVRGRFFYDSWAGPVVNFVMGWWSMFPPFFAGGENPLTEKREF
                     DKFSMRLLAQLCREGAGNVIGFHPEGTRNKSADPYSYLRPQPGVGKLIKDARPQVVPV
                     FIAGLGNDLARQVLGNWRGGEAVRVRFGPPLDLSEYFDRRDSVRTYKEIADHVMSKIA
                     ELGEQDRAALAPEARRAALGAAPSQPLKN"
     gene            complement(3468..4322)
                     /locus_tag="VD968_13925"
     CDS             complement(3468..4322)
                     /locus_tag="VD968_13925"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HYE15537.1"
                     /translation="MGTMPRGDGAGELNNNTEAGRPEAAEGRYERHGGFASGLLAKER
                     DVIVYLPPGYDADTSRRFPVLYLQDGQNLFDGATAFIYGQHWRVGETADALIGAGAVE
                     PLIIVGIYNAGERRIEEYTPTQDGRTRIGGQADLYGRFLVEELKPFIDERYRTLPGAE
                     DTGLGGSSLGGLVSLHLGIKYPHVFGKLAVLSPSIWWDRRIILRKVRTLEAKPNVRVW
                     IDVGTEEGDYAVKDAGLLRDALVARGWSLGGDLKYFEAAGARHDELAWAERVGPVLKF
                     LFPRESNG"
     gene            complement(4424..5641)
                     /locus_tag="VD968_13930"
     CDS             complement(4424..5641)
                     /locus_tag="VD968_13930"
                     /inference="COORDINATES: protein motif:HMM:NF014686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HYE15538.1"
                     /translation="MYVVLIAPGYPAEMPLFTRGLARVGARVLGVGDQPEEDLPAVAR
                     ESLAGYLRVESLVDEAAVVEAVRRWASPVRVERVECLWEPGVLLAAKLREALGAEGMT
                     YEEAVPFRNKDRMKQVLSAAGIRTPRHALATTAEGCRDAARRIGFPVILKPIAGAGSA
                     DTHRVDDEAALEAALSRIGHLDEVNVEEFVEGEEYTFDTVCVGGRVAFHSISWYRPRP
                     LVARTVEWISPQIVMLRDTEADELSGGREMGMAVLGALNFRTGFTHMEWYRKADGEVV
                     FGEIAARPPGARSVDVMNYACDIDLFTGWAEAVAHGRFTQPVERRHNAVIIFKRAQGQ
                     GRVRHVEGLARLFERYGEHIVCVDLLPAGAPRRNWQQTLIGDGYLIVRHPSLERALEI
                     ADAVGTDLQLHAG"
     gene            complement(5658..6878)
                     /locus_tag="VD968_13935"
     CDS             complement(5658..6878)
                     /locus_tag="VD968_13935"
                     /inference="COORDINATES: protein motif:HMM:NF014298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HYE15539.1"
                     /translation="MPFVIYAAPWFSETAARFMEAVVGLEGVRLAAISQEPLEKAPPA
                     LREAFVAHWRVDDIFDAGQLAHAAHALSSRFGPIHRLFGANEMLQVPLADARAALGVE
                     GMGPEAARNFRDKARMKAVLRAAGVPCARYGLAASEGDAWRFAAEVGYPLILKPPAGA
                     GSQATYRVDNDDAMREALRLSPPGAGQPVLVEEFITGDEHSFETVTVRGRPVWHSLTH
                     YYPTPLEVLRNPWVQWCIVLPREIDEARYDDIRAAAFRTLEALGMGSGMSHMEWFRRR
                     DGSVAISEVGARPPGAQITTLVSRAHDFDFLREWARVMIYDEFRRPERRYAAGAAFLR
                     GQGSGRVKAIHGLEQAGRELGELVVDVQLPQAGQAPTGTYEGEGYVILRHPETAVVER
                     ALHRLVSLIRVELG"
     gene            complement(6973..>8478)
                     /locus_tag="VD968_13940"
     CDS             complement(6973..>8478)
                     /locus_tag="VD968_13940"
                     /inference="COORDINATES: protein motif:HMM:NF014961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HYE15540.1"
                     /translation="TVGELFGSGQMQLPFVLQSAEVMKAAVRFLEPFMEKKGGATAKG
                     TMVLATVKGDVHDIGKNLVDIILTNNGYRVVNLGIKQPVENILRAFEEHGADAIGMSG
                     LLVKSTLIMKENLELMTERGLTVPVVLGGAALTRRYVEEDLKSLYAGRLFYARDAFDG
                     LHIMDALKGAAGAAAAAEASARAGGDGAAAGDQTEELVGEDAKLGVSKPVARARAARA
                     AASGDTTHTARSDVSASAPIPAAPFYGSRVVEDVPLGDVFRFVNETALFKGQWQFKQG
                     KRSAEEYRTFVAEKVRPVYEELKERSEREGLLVPRVVYGYFPCNSEGNDLVVFHEDGR
                     TESARFTFPRQPSGKRLCLADFFAPRDSGRVDVVAFQLVTVGRRASDYAQELFRSDNY
                     SDYLYFHGLSVESAEALAELWHKRVREELGIAGRDAAELTKLFHQGYQGSRFSFGYPA
                     CPNLEDQTKLFELLWPERIGVELSEEFQLVPEQSTSAIIVHHEEAKYFSID"
BASE COUNT         1302 a         2925 c         2903 g         1348 t
ORIGIN      
        1 gcgttcgggg agcctgaggc agtcgctccg ccacgcgcgc tcgttcctcg agcgcggcta
       61 caccgccctc atcttccccg aaggcacgcg ctcgatgacg gggcagatgg cagagttcaa
      121 gtcgggcttc gcctacctcg cgctctcgac gcgcacgggg attctgccca tctacctgca
      181 cggcacatac gaggcgttcc cgaagggctc gaacatcatc cgcagccgtg acgtgggcgc
      241 gcgcatcggc cgcttcctcc cgcccgagga gttagaggag ctcgcgaagg gggtgccgaa
      301 gtcggaggct taccgcctca tcgccgcgct cgtccgccac gagatcgaga acctgcgcga
      361 cggcacccgc cacgccttcg acgccggcgg cctccgacgc cgctggaagg ccgagcggcg
      421 tcacgccgca gcgggcgacg cgcacgaaga gacagagctt gccactacgg gcgactgaga
      481 cttcctatgc cgactaagcg ggcgccgcgt aaagccgcgg cagcgaaagg cgccacgaaa
      541 aagggcgccg cgaagacgac ggcgctcgcg cgcagggcgc agcccgtgac gctcgtgacg
      601 ggcgggactg gcttcctcgg ctcgcacctc gtcaggctct tagtcgccga gggcgtgaag
      661 aacgtcaggg tgctgagcac gtcggctccc gcgtggttgg aagagctcgg cgtcgagtcg
      721 gtgcggggct ccgtgacttc gccggaggac ttggcgcggg cggtcgaggg agtcggcgag
      781 atttaccacc tggcggggcg ggtcgcgcgc tcccgcgatg gcgcgcacga gatgtaccgc
      841 ctccacgtcg aaggcacgcg cctgctgtgt gaggccgccg ctcgcgcggg cgtgcgctcc
      901 gtcgtgctcg cctcgacgag cggcaccgtg gccgtgaccg acacgggcga cgttgtgccg
      961 gacgaggact ggcccacgcc cgccgacatc atctcgcgct gggactacta cgcgagcaag
     1021 gtctttcagg agcgcgccgc gctcgaaaac ttctccggca ggaatcagcg cctcgtcata
     1081 atgaacccga gcctcctgct cggccccggc gacgagcgcc tgagctcaac gaaggtcgtg
     1141 ctcgacttca ttggccgcaa gatcatgacg gtgccgaagg ggggcctgag tttcgtggac
     1201 gcgcgcgacg cggcgcaggc gttctacgcg gcgatgcgtg aggggcgcca cggcgagcga
     1261 tacctgctcg gggccgtcaa ctggacgttc gacaagttct tcggccggct cgaacgactg
     1321 accggagttt cggcgccgtt cctctccttg ccttcgcggc tcgcggtcgc cggctcgcgc
     1381 ggcctcggcg cgctctacaa acactggaag ctcgcaccgc cggtcgagcc ggtcgaggtc
     1441 gagatggcgg aatacttctg gtacgtggac gcctcgaagg cccgccgcga gttgggcttc
     1501 gccccgcgcg acccgtccga aacgctcctc gacacggtca actacgtccg cgagaacttc
     1561 ctcggcgact ccgccttcaa gaacgccgga tgaacgccct ctctgtttaa tcggccggcg
     1621 cacgcacgct caaagcggcg tgcagaatct cgaacgtcgc gggcaggcgg ccgaccagct
     1681 cgccgtcaac ttcgagctta acctcttccc cgccgtcggg cgcggcctcg acgcgacgcg
     1741 cgcgcgcgtg gcggacttgc tgcatgccga ggtgcgtgcc gagatagacg cggtaggagt
     1801 tggcgaggat agagagcggg ctcatgtcgc cgattgagac catgtcgagc tcgccgtcgt
     1861 cgagcctggc gaggggcgcg actttcatgc cgcctccgaa gtagcgcgcg ttggcgacgc
     1921 agaagttgac aaccgtgagc cgcgcctccg gcccgccgtc gagccgcacg cgcacgcgcg
     1981 gcttctcgaa cgcgaaggtc gcctgaagcg cggcgacggc gaacgagagc ctcccgccga
     2041 gcacgcgcgc gccgcccggc gcgagccagg agccctcctt cacgcgcctt atcacgtcgc
     2101 cccccatccc gaacgaagcg acgttaagga agaacctcgt ctcttcaccg ccgccctccg
     2161 cgtgataggt gacgcgcccg gcgtccatgc gtctcgtctt cccttcgcgt agcgctcgtg
     2221 cggcctccgc cgggcctgcg ggcagccgca gcgtgcgtcg gaagtcgccg cccgtcccgc
     2281 ttggcaggac tgcaaactcg gcgtcggcgc ccgagcgcag tatcccgttc gccacctccg
     2341 aggccgtgcc gtcgccgccg caggcgatta tcagtcggcg gccggcgcgc gcttcccgtt
     2401 cggctatctc ggaggcgtgg ccggcgtgct ccgtgaaggc gcagttgaag gggccgaagt
     2461 ggcggcgcac gtcgctcgcg gtgccgggcc acgcctcgcg cgtcgagccg ccggccgaag
     2521 tcgggttgac gatgatgaga ggcagcacgt ccgtcagttt ttaagcggct ggctcggggc
     2581 ggcgccgagc gcggcccggc gcgcttcggg cgcgagcgct gcgcgatcct gctcgcccag
     2641 ctcggctatc ttcgacatca cgtggtcggc aatctccttg taagtcctca cggagtcgcg
     2701 gcggtcgaag tattcggaga ggtcgagcgg ggggccgaag cgcacgcgca ccgcctcgcc
     2761 gccgcgccag ttgccgagca cctgccgggc gaggtcgttc cccaagccgg cgatgaagac
     2821 ggggactacc tgcggccgcg cgtcctttat gagcttaccg acgccgggct gcggccggag
     2881 gtacgagtag gggtctgcgg acttgttgcg cgtgccttcg gggtggaagc ctatgacgtt
     2941 gccggcgccc tcgcggcaga gctgcgcgag cagccgcatc gagaacttgt cgaactcgcg
     3001 cttttcagtc agggggttct ccccgcccgc gaagaagggc gggaacattg accaccagcc
     3061 catcacgaag ttgacgaccg ggcccgccca ggagtcgtag aagaagcggc cgcgcacggg
     3121 gaagaagagg cgcttgcgcc accccgtcct cctgaagagc acggtcgaga ctacgtacat
     3181 gtcgaagaag gagcggtggt tggcgacgag caggagcggc cgctcgtgcg agaccgattc
     3241 gagatgttcg aggccgtgcg gtcgcaggat gttgtaggtg gccaggtgaa tccatccggc
     3301 gcctatcgtg cgctggcaga aagtccagaa gcgcttccag cgcccggcgt tcatcctccg
     3361 cgccagcctg aaggcgaacc gctccttgcg cgagagcact gccatctcct cgcgcgtcgg
     3421 cgcgggccaa tgctcgcgcg ccccggcctc gtctctcccg ccatgcgtca tccgttagac
     3481 tcgcgtggga acaggaactt gagcactggc ccgacccgct cggcccaggc aagctcgtcg
     3541 tggcgggcgc ccgccgcctc gaagtatttc aggtcgccgc cgagcgacca gccgcgcgcg
     3601 acgagcgcgt cgcgcaaaag ccccgcgtcc ttgacggcgt agtcgccctc ctcggtgcct
     3661 acgtcaatcc acacgcgcac gttaggcttg gcctcgagcg tgcgaacctt ccggaggatg
     3721 atgcgcctgt cccaccagat cgagggcgag agcacggcga gcttgccgaa gacgtgcggg
     3781 tacttgatgc cgaggtggag cgagaccagg ccgccgaggc ttgagccgcc caggcccgtg
     3841 tcctccgcgc cgggcagcgt gcggtagcgc tcgtcaatga agggcttcag ttcctcgacg
     3901 aggaagcggc cgtacaggtc tgcctgcccg ccgatgcgcg tgcgcccgtc ctgcgtcggc
     3961 gtgtactcct ctatgcgccg ctcgccggcg ttgtagatgc ccacgattat gagcggctcg
     4021 accgcccccg cgcctatgag cgcgtcggcc gtctcgccca cgcgccagtg ctggccgtag
     4081 atgaaggcgg tcgcgccgtc aaaaagattc tgcccgtcct gcaagtagag gacggggaag
     4141 cggcgcgagg tatcagcgtc atagccgggc ggcagataga cgattacgtc cctctcctta
     4201 gccagcagcc ccgacgcgaa gccgccgtgc cgctcgtacc tcccttcggc cgcctccggc
     4261 cgcccggcct ccgtgttgtt gtttagttct ccggcaccat ctccgcgagg catggttccc
     4321 atcacagtca tcattattgc tgtcgaatta acttcgggcc ggcgtgcggc ccagaccatt
     4381 ttacaacgaa cgcgcgcccg agcgccctcc gccgcgcgcc ctgtcagccg gcgtggagtt
     4441 ggaggtctgt gccgacggcg tcggcgatct cgagcgcgcg ctcgaggctc gggtgtcgga
     4501 cgatgaggta gccgtcgcct atgagcgtct gctgccagtt ccgtcgcggg gcgcccgcgg
     4561 gcaggaggtc aacgcagacg atgtgctcgc cgtaacgctc gaagaggcgc gcgaggccct
     4621 cgacgtgcct gacgcggccc tgcccctgcg cgcgcttgaa gatgatgacg gcgttgtggc
     4681 ggcgctcgac cggctgagtg aaccggccgt gggcgacggc ctcggcccag ccggtgaaga
     4741 ggtctatgtc gcaggcgtag ttcatcacgt caacggagcg cgcgccgggc ggccgcgccg
     4801 ctatctcgcc gaagacgacc tcgccgtcgg ccttcctgta ccactccatg tgcgtgaagc
     4861 ccgttcggaa gttgagcgcg ccgagcacgg ccatccccat ttcgcgcccg cccgaaagct
     4921 cgtcggcctc ggtatcgcgt agcatcacta tctgcgggct tatccactcg acagtgcgcg
     4981 cgaccagagg gcgcgggcga taccaggaga tgctgtggaa ggctacgcga ccgccgacgc
     5041 agacggtgtc gaacgtgtac tcctcgccct cgacgaactc ctcgacgttg acttcgtcca
     5101 ggtggcctat gcgcgagagc gcagcttcca acgccgcctc atcatcaacc ctgtgtgtgt
     5161 cggcggagcc ggcgccggcg atgggcttga gaatgacggg gaagccaatg cggcgcgcgg
     5221 cgtcgcggca gccttcggcg gtcgtggcga gcgcgtggcg cggcgtccta atgccggccg
     5281 cgctcagaac ctgcttcatg cggtctttgt tgcggaaggg gacggcctcc tcgtaagtca
     5341 tgccctcggc cccgagcgcc tcgcgcagct ttgcggcgag gagcacgccc ggttcccaga
     5401 ggcactcgac gcgctcgacg cggacgggcg aggcccagcg ccgcacggcc tcgacgaccg
     5461 ccgcctcgtc aaccagagac tctacgcgca ggtagccggc caggctctcg cgcgcgaccg
     5521 ccggcaaatc ctcttccggc tggtcgccca cgcccagcac ccgcgctccc acgcgcgcga
     5581 ggccacgcgt gaagagcggc atttcggccg ggtagcccgg cgctattaac accacgtaca
     5641 tttcggctcc cggaagctca ccccagctcg acccgtatga gcgagacgag gcggtggagc
     5701 gcgcgctcga ccacggccgt ctcggggtgg cgcaagatta cgtagccttc gccctcgtag
     5761 gttcccgtcg gggcttggcc cgcctgcggg agctgcacgt ccacgaccag ctcgcccagc
     5821 tcgcgccctg cctgctccaa cccgtggatt gctttaaccc gcccgctccc ctgccctcgc
     5881 aggaaggcgg cgcccgcggc gtagcgacgc tcgggcctgc ggaactcgtc gtagatcatc
     5941 acgcgcgccc actcgcgcag gaagtcgaag tcgtgcgcgc gcgagacgag cgtagttatc
     6001 tgcgcgccgg gcgggcgcgc gccaacttcg gagatggcga cgctcccgtc gcggcgccgg
     6061 aaccactcca tgtggctcat gcccgacccc atcccgaggg cttcgagcgt gcggaacgcg
     6121 gcggcgcgta tgtcgtcgta gcgcgcttcg tcaatctcgc gcggcagcac tatgcaccac
     6181 tgcacccagg ggtttcggag gacttcgagc ggcgtggggt agtagtgcgt gagcgagtgc
     6241 cagacggggc ggccccggac ggtgacggtc tcgaaagagt gctcgtcgcc cgtgatgaac
     6301 tcttcgacca gaacgggctg acccgcgccc ggcggggaca ggcgtagcgc ctcgcgcatg
     6361 gcgtcgtcgt tatccacgcg gtaagtggcc tgcgagccgg cgccggccgg gggcttcagt
     6421 atgagcgggt atccgacctc cgcggcgaag cgccacgcgt ccccttcgga ggcggcgagg
     6481 ccgtagcgcg cgcaaggcac gcccgcggcg cgcagcacgg ccttcatgcg cgccttgtcg
     6541 cggaagttgc gcgcggcctc cggccccatg ccctcgacgc ccaacgcggc gcgcgcgtcg
     6601 gcgagcggga cttgaagcat ttcgttcgcg ccgaacaggc ggtggatggg gccgaagcgt
     6661 gaggaaagtg cgtgcgcggc gtgggcgagt tgacccgcgt cgaatatgtc gtccacgcgc
     6721 cagtgggcga cgaacgcttc gcgcagggcc ggcggagcct tctccaaagg ctcctggctt
     6781 atggcggcga ggcgcacgcc ttcgagaccg accacggctt ccatgaagcg cgcggcggtt
     6841 tcggaaaacc acggggccgc gtagatgacg aagggcatgc tggtaaggcg ctcctcggcc
     6901 gcggggagat ttaagccgcg cggcccctta ccgggatcgt tcgatcgccc gtcatcttac
     6961 accaacgggc cgtcagtcaa tcgagaaata cttcgcctct tcgtggtgta ctatgatggc
     7021 cgaggttgac tgctccggca ctagctggaa ctcctccgac agctcgacgc ctatgcgctc
     7081 gggccagagc agctcgaaga gcttcgtctg gtcttcgagg ttcgggcagg ccgggtagcc
     7141 gaagctgaaa cgcgagccct gataaccctg gtggaagagc ttcgtaagct cggcggcgtc
     7201 gcggccggct atccctagct cttcgcgcac gcgcttgtgc cagagctctg cgagggcctc
     7261 ggccgactcg accgagaggc cgtggaagta gaggtagtcg gagtagttgt ccgagcggaa
     7321 aagctcctgc gcgtagtcgc tcgcgcgccg cccgacggtg actagctgga aggcgacaac
     7381 gtccacgcgg ccgctgtcgc gcggcgcgaa gaagtcggcc aggcagaggc gcttgcccga
     7441 gggctggcgc gggaaggtga agcgcgcgct ctccgtgcgg ccgtcttcgt ggaagacgac
     7501 gaggtcgttg ccctcggagt tgcaggggaa gtagccgtaa actacgcgcg gcacgagcag
     7561 cccctcgcgc tcggagcgct ccttcaactc ctcatagacc ggccgaacct tctctgcgac
     7621 gaaggtgcgg tactcctccg cgcttcgctt cccctgcttg aactgccact gccccttgaa
     7681 gagcgcggtc tcgttgacga acctgaaaac gtcgccgagc ggaacgtctt cgacgacgcg
     7741 ggagccgtag aagggcgcgg cggggattgg cgcgctcgcg ctcacgtccg agcgggcggt
     7801 gtgcgtcgtg tcgcccgaag cggcggcgcg tgccgcgcgc gcgcgggcga cgggcttgct
     7861 gacgccgagc ttcgcgtcct cgccgacaag ctcttccgtc tggtcgcccg ccgcggcgcc
     7921 gtcgccgccc gcccgggccg atgcctcggc ggccgccgcc gcgccggccg cgcccttgag
     7981 cgcgtccatg atgtgcaggc cgtcgaatgc gtcgcgcgcg tagaagaggc ggcccgcgta
     8041 gagcgacttc aagtcctcct cgacgtagcg ccgcgtgagc gcggccccgc cgagcacaac
     8101 ggggacggtc agcccgcgct ccgtcatcag ctccaggttc tccttcatta tgagcgtgga
     8161 cttcaccagc aggcccgaca tgcctatcgc gtccgccccg tgctcctcga aggcgcggag
     8221 gatgttctcg accggctgct tgatgccgag gttgacgacg cggtagccgt tgttcgtcag
     8281 gattatgtca acgaggttct tgccgatgtc gtgcacgtcg cccttcactg tggcgagcac
     8341 catagtcccc ttcgccgtcg ccccgccctt cttctccatg aagggctcga ggaagcgcac
     8401 ggccgccttc atcacctcgg ccgactgcaa cacgaagggg agctgcatct ggccgctgcc
     8461 gaagagttcg cccacggt
//
LOCUS       DASPKR010000519         3682 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_335236, whole genome shotgun sequence.
ACCESSION   DASPKR010000519 DASPKR010000000
VERSION     DASPKR010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3682)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3682
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335236"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..806)
                     /locus_tag="VD968_13945"
     CDS             complement(<1..806)
                     /locus_tag="VD968_13945"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: protein motif:HMM:NF001770.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HYE15541.1"
                     /translation="MTEKIRKIVLAYSGGLDTSVMLRWLRERYECEVVCYCADVGQGE
                     ELAGLEEKALATGASKLYVEDLRREFVEEFVWPAVKANAVYEGVYLLGTSLARPVIAR
                     RQIEVARREGADAVAHGATGKGNDQVRFELTYYALEPEIKVVAPWREWEFRGRSDLIA
                     YAEEHGIPVTATAERPYSTDRNLMHVSYEGGILEDPWAEPPADIFQLTAAPEQARAEP
                     EYVTVEFERGAPVGLNGRRLGAVELLAELNRVGGEHGVGRVDLVENRFVG"
     gene            complement(828..1244)
                     /locus_tag="VD968_13950"
     CDS             complement(828..1244)
                     /locus_tag="VD968_13950"
                     /inference="COORDINATES: protein motif:HMM:NF013483.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15542.1"
                     /translation="MEKSKRQDKILSLIRAERIGTQQELTARLARAGIVAAQSSVSRD
                     LEELGVVKRHGYYTLPAATNGAAARGLLALEPAGDCLVVAKCEPGLASAVAVEIDRAA
                     VAEIVGTIAGEDTVFIAARDRKAQRAVIRKVWELFG"
     gene            1370..2764
                     /gene="argH"
                     /locus_tag="VD968_13955"
     CDS             1370..2764
                     /gene="argH"
                     /locus_tag="VD968_13955"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HYE15543.1"
                     /translation="MSESGKLWGGRFEGQADAGFARFNRSFGFDRKLFEADVRGSLAH
                     CEGLRRAGVLSDEEAARITEGLRSLLRRASEEGEAFFDDEGAEDVHSFIEARLVELAG
                     DSGRKLHTGRSRNDQVATAMRLWLRAEIDSVSAALRAAQGALLDLAEAHEGAVLPGYT
                     HMQRAQPVLWAHWCLAYFEMLARDSERMREVRRRVNVLPLGAGALAGTGHAVAREEVA
                     RALGFEGVARNSLDAVSDRDFCVEFAAASSLVMAHLSRLAEDLILYATTEFGFVELGD
                     AVATGSSLMPQKKNPDALELVRGKAGRVFGHTLALLTVLKGLPLAYNKDMQEDKEAVF
                     DVAATVRASLEVTATVLGNVRLREGRARDAATVGHMNATEMADYLVRRGVPFREAHAC
                     VGRMVLYASGKGLELHELELEELRGFSPLVSEDVYEALSLESTLSSKSQTGGTAPERV
                     AEALAHARASLGEG"
     gene            complement(2761..>3682)
                     /locus_tag="VD968_13960"
     CDS             complement(2761..>3682)
                     /locus_tag="VD968_13960"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYE15544.1"
                     /translation="SRAHALIGEIVSSRSLAAAPVAQAERVVMLTPSSTSPEVTAVGD
                     FIFRSCYTDPFQGAALAQFAARTLGARRAALLFDDAQAYSVNLKNIIREEFARQGGEV
                     VAEQPYQAGAADFSVPLAEVGLARPDVIFIPGYYLEAGLMARQARSIGITAPLVGGDG
                     WDSPRLFEIGGEALAGDFFSSHFSADDSSPRAVRFVEDYRRLFTSTPDAFAATAYDAA
                     RILLDAAARAGSFDRQAVRDALAATRDFPGVTGDVTFDSARNAVKPIFIIRIEDLGRN
                     SVRERITPDQIVPPATPTPSPTPRRRRRAR"
BASE COUNT          559 a         1208 c         1327 g          588 t
ORIGIN      
        1 atcccgacga agcggttctc gaccaggtca acgcgcccga cgccgtgctc tccgcccacg
       61 cggttaagct ccgcgagcaa ctcgacggcg ccgagcctcc ggccgttcaa gcctaccggc
      121 gcgccgcgct cgaactcgac ggtcacatat tcaggctcgg cgcgcgcctg ctcgggcgcc
      181 gccgtcaact ggaaaatgtc tgcgggcggc tcggcccagg ggtcttcgag tatgccgccc
      241 tcgtaggaga catgcatgag gttgcgatcg gtcgagtagg gcctctcggc cgtggccgtg
      301 acgggtatgc cgtgctcctc ggcgtaggcg atgaggtcgc tgcggccccg gaactcccac
      361 tcgcgccacg gcgccacgac ctttatctcg ggctcgaggg cgtagtaggt cagctcgaac
      421 ctaacctgat cgttgccctt ccccgtcgcc ccgtgcgcga cggcgtcggc gccctcgcgt
      481 ctcgctacct cgatttgcct gcgcgcgatc acggggcgag cgagcgacgt gccgagcaga
      541 tagacgccct catagacggc gttggccttg acggcgggcc agacgaactc ctcgacgaac
      601 tcgcgccgca agtcctcgac gtagagcttc gacgcgcccg tcgcgagcgc cttctcttcg
      661 agccccgcaa gctcctcgcc ctgcccaacg tctgcgcagt agcagacgac ctcgcactcg
      721 taacgctcgc gcagccagcg cagcatcaca gacgtgtcga gcccgcccga gtacgccaga
      781 actatcttcc ttatcttctc cgtcacgccg tctcctttac ctgcctctta cccgaaaagc
      841 tcccagacct tcctgataac ggcgcgctgc gccttgcggt cgcgggcggc gatgaagacc
      901 gtgtcctcgc ccgcaatcgt cccgactatc tcggcgacgg cggcgcggtc aatctcgacg
      961 gccacggccg aagccagccc cggctcgcac ttcgcgacga cgaggcagtc gcccgccggc
     1021 tcaagcgcga gaaggccgcg cgccgccgcg ccgttcgtcg ccgcggggag cgtgtagtag
     1081 ccgtgccgct tgacgacgcc gagctcttcc aggtcgcgcg agacgctcga ctgagccgcg
     1141 actatccccg cgcgcgcgag ccgcgcggtc aactcctgct gcgtgcctat gcgctcggca
     1201 cgtatcaggc tcagaatctt gtcctgccgt ttagacttct ccataggcga atacttatgc
     1261 gccggttttg cataagttgt gcatagatgc ataaaatagc aatatagttg ttcgcatggc
     1321 aagtcgcgcc ttaagtttgc cgtcgtagaa ggagggcggg gtgaaaggca tgagcgaatc
     1381 gggaaagctt tggggcgggc gtttcgaggg gcaggccgac gcggggtttg cgcgcttcaa
     1441 ccgctcgttc ggcttcgacc ggaaactgtt cgaggcggac gtgcgcggga gcctcgcgca
     1501 ctgcgagggg ctacggcgcg cgggcgtgct cagcgacgag gaggccgcgc gcataaccga
     1561 aggcttgcgg tcgctcctgc ggcgcgcgtc ggaagagggc gaggcgttct tcgacgacga
     1621 gggggcggag gacgtgcact ccttcataga ggcgcggctg gtggagcttg cgggcgactc
     1681 ggggcggaag ctccacacgg gccggagccg caacgaccag gtggcgacgg cgatgcggct
     1741 gtggctgcgc gccgagattg actcagtctc cgcggcgctg cgcgcggcgc agggcgcgct
     1801 gctcgatttg gccgaggctc acgagggcgc ggtgctgccc ggctacacgc acatgcaacg
     1861 cgcgcaaccc gtcttgtggg ctcactggtg cttagcttac ttcgagatgc tcgcgcgcga
     1921 cagcgagcgc atgcgcgagg ttcgccgccg cgtgaacgtc ctgccgctcg gagcgggggc
     1981 gctcgccggg acgggacacg cggtggcgcg cgaggaggtc gcccgcgcgc tcggcttcga
     2041 gggggtggcg cgcaacagcc ttgacgccgt tagcgaccgc gacttctgcg tcgagttcgc
     2101 cgccgcctcg tcgctcgtca tggcgcacct gtcgcgcctc gcggaagatt tgatacttta
     2161 cgcgacgacc gagttcggct tcgtcgagtt gggtgacgca gtcgccacgg ggtcgagcct
     2221 catgccgcag aagaagaacc cggacgcgct cgagctagtg cgcgggaagg cggggcgcgt
     2281 cttcggccac acgttggcgc tgctgacggt gttgaagggg ctgccgctcg cctacaacaa
     2341 ggacatgcag gaggacaagg aggccgtctt cgacgtggcc gcgacggtgc gcgcctcgct
     2401 cgaagtcacg gcgacggtgc tcgggaacgt gaggctgcgc gaagggcgcg cgcgcgacgc
     2461 ggcaacggtc ggccacatga acgcgacgga gatggccgac taccttgtgc gccgcggggt
     2521 gcctttccgc gaggcgcacg cgtgcgtagg ccgcatggtg ctctacgcct cgggcaaggg
     2581 gctagagctt cacgaactgg agctcgagga gctgcgcggc ttctcgcctc tcgtctcgga
     2641 ggacgtttac gaggcgctct cgctagagag cacgctctcc tcaaagtcgc agacgggcgg
     2701 caccgcgccc gagcgcgtcg ccgaggcgct cgcgcacgcg cgcgcgtctc tgggcgaggg
     2761 ctagcgtgcg cggcgcctgc gccggggcgt ggggctcggg gtcggggtgg cgggcgggac
     2821 tatctggtcg ggagttattc gctcgcggac ggagttgcgg cctaagtcct ctatgcggat
     2881 tatgaagatc ggcttgacgg cgttgcgcgc ggagtcgaac gtcacgtcgc ccgtgacgcc
     2941 ggggaagtct cgggtcgcgg ctagcgcgtc gcgcacagcc tggcggtcga aggagccggc
     3001 gcgggctgcg gcgtcgagga gtattcgcgc cgcgtcgtag gcggtggcgg cgaaggcgtc
     3061 gggcgtcgag gtgaagaggc gccggtagtc ttcgacgaag cgcacggcgc gcgggctaga
     3121 gtcgtcggcc gagaagtggc tggagaagaa atcgccggcc agcgcctcgc ctcctatctc
     3181 gaagaggcgc ggcgagtccc agccgtcgcc gccgacgagc ggcgcggtga tgcctatcga
     3241 gcgcgcctgc cgcgccatca ggcccgcctc gaggtagtag ccggggatga atatcacgtc
     3301 ggggcgcgcc aagcccacct ccgcgagcgg cacggagaag tccgcggcgc cggcctggta
     3361 aggctgctcg gcgactacct cgccgccctg gcgcgcgaac tcttcgcgga tgatgttctt
     3421 gaggttgacg gagtaggctt gcgcgtcgtc gaagagcagg gccgcgcgcc gggcgccgag
     3481 cgtgcgcgcc gcgaactgcg cgagcgccgc gccctggaac gggtctgtgt agcagctacg
     3541 gaagatgaag tcgccgacgg ccgtgacttc cgggctggtc gaagagggcg tgagcatcac
     3601 gacgcgctcg gcctgcgcga cgggcgcggc cgcgagcgag cgcgagctga ctatctcgcc
     3661 gatgagggcg tgcgcccgcg ac
//
LOCUS       DASPKR010000520        16273 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_595572, whole genome shotgun sequence.
ACCESSION   DASPKR010000520 DASPKR010000000
VERSION     DASPKR010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 16273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16273)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16273
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_595572"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VD968_13965"
     CDS             <1..220
                     /locus_tag="VD968_13965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15545.1"
                     /translation="DLRLGAGYNWAGAYEPFGTSLQPGRRGFYFTISSKLSNLFDLFG
                     TSSAQGAAEGAGQSQQQEQPGDGKKREE"
     gene            229..3885
                     /locus_tag="VD968_13970"
     CDS             229..3885
                     /locus_tag="VD968_13970"
                     /inference="COORDINATES: protein motif:HMM:NF024627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HYE15546.1"
                     /translation="MRRTPQPVLKCEGRARRRAPRPRATRPVVTAALAAVLLLLGLGL
                     PGLVPVREAEAQNAGGGAMELIPAGSLVIAMDNTRQNIGAAFNLKAYGVAVRLLHAGV
                     PVKWAIQPGKAKDGTDFTVTAQRIYPSAIGAASQSFSGGPFVVHRDYAVPAKAVISAY
                     ATTNNVAVYETTADVTAPIRHTLTHKPKVAVFDDGGSAAIHTAYLVAAGFTSGTHYDV
                     IPAATLVTVNADACFTIGTEPHWDGAGGTDPQVNAIRLFVQSGGNFLAECEGISAYEN
                     NATYGRFQTTTGLVDGAGSTPFQYPSPDLPYSQFVGEMANAGGSIRDYAPAAGGAYRA
                     STEIHARKSTGGLRGSDGSLAVRASVSRLAGTTTGGFVFYLGGHEYTTGDITNINGIR
                     LYMNAVMTPSGRPSNCNLTVVPRTIAGTIYEDVNGDSQLGDAVGRPGVDVRLYQDGNN
                     NGLVDAADTYLAGSVTDAAGQYSFQVAPQATGNNYLVAVDSKDVSPSAGLIGGRGDAW
                     AEQTYGDDPTTAAFALGARFGGRQSGVSDSFNQASTTPANNTYEHLARVDVSSADVTN
                     AHFAFSFNVVTNTRAGDNSDDDALSATRTVQGSLRQFIQNANAVVGANYMRFVPAVAE
                     NAGSYWRVTVTAALAAVVDASTTFDGRAYDSSNGTSVRDTNAGSLGAGGTVGVQALAL
                     PQVQRPELEIFDNAGIAVGLDLQAANCAVRRLAIYGFGTLANNDAHAQVRVGNVAGAL
                     IEENVIGSAATGFADPGAATRSVGDNVRVVGGDGGTLRNNLVGFTQGKGIQLGGGANG
                     WLVEGNEVRGNGINNSNLDGIEVEGGSNTATIRGNLFAGNEACGIDTYQSSGSNTVEN
                     NTVTGNGVGPNANIESPGVRLYGTGSLVRLNVIAANFGAGVMVNSASSANTISRNSVY
                     ANGTITNKAGAAASNQIGIDLLSAADSQTTGTAPFVTRNDSGDADAGANGLLNFPVLT
                     LARLSNGNLVLQGYASPGAAIEFFVAAPDPSGFGEGQTYLLTLTEGSAADTDATTGTY
                     TSPVNGLNVGTDTTNLFTFTVPLPPGVAVGTVLTATATVSGSTSEFSGNVTVSLAPPE
                     VRLVKACTAPADCLRVEGQPPGTDLTYSIDFTNVGGSPAQVFVIKDPIPASTDFKVGS
                     ATTNLGTTGMTVTVEYSEDNGANYNYTPASGAGGAPAGYDRKVTHVRWTFAGALPSAS
                     PNNAGSVGLTVRIR"
     gene            4348..12789
                     /locus_tag="VD968_13975"
     CDS             4348..12789
                     /locus_tag="VD968_13975"
                     /inference="COORDINATES: protein motif:HMM:NF027787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5050 domain-containing protein"
                     /protein_id="HYE15547.1"
                     /translation="MRNDTSVRRLSSVLLSTLLLLSNFVAMPAAARAASPQQAQIVLD
                     GFVKNQFGAPVAGALVTLSGDAAGQVTTGSDGYYSFNVPAACGVAYQLAATVNGVQAG
                     GARSVSGCVLSNYRFEDFIYQAPYNITLSGYVRTTTGAGARDVTVNLTGDSTQTTQTD
                     PTGYYSFSVPAGCPRTYEVGIVRLDGLTGGNQSISGCLTGDHVFSDFVYNPPPPANGK
                     IAFVSMRTVGQEIWTMNPDGTNQARVTLIYGVTDPAWSPDGAKFAFTYHNDIHVINAD
                     GTGLTQLTTFAEADFHPEWSPDGTKIAFARRDNFGNANIYVMNADGSGQTRLTDNPYN
                     DAHPSWSPDGTKIAYSSENPANLPLTYYEVFTINPDGTGRTRVTNTQTQFQTSNATQP
                     DWSPDGMKIAFVSNRSNTAGGGSELYVVNADGTGEVRLTNNTEDDSTPEWSPDGQKIA
                     FTRYINNNSSTPEIFVMNADGTGQQNLSNDPGYDAQPTWRRAPAPTPTPTPTATPTAT
                     PTATPTPTATPTATPTATATPTPTPQSCQTQNSITMLPPRCGAGLVQSSSVSGALFEK
                     TEATRGSYSFHSMMSAEAMLGDGTIEFTLPQRGTAYVGLTETEPWCGYDSVDYLFHVD
                     ANYGGQSGGIYYVREHQSPGARPDSGSFRATEHPLFRITRTGNVVSYYVNNALYWVSD
                     KQSGAPLRLYVLLYAPNTQVQVSEFTASGGLKVRGTAPQMQDVTWQNLVNVTADGNSI
                     TKTSGASEGYDAGASSAQQITRDNSFYRFKPARSNDYMLTALAASDPNASSPVAPVSL
                     YFSNGSLYNWTTGLGGSLGTFNSESVFELAVHNGAVDYYRLDPSTGERTRITGHGFKV
                     SFPLLFDTSLRTTNSGVRDVQFGQYPYVSPCEADPTPTPTPSPTPTPTPSGARVGKIV
                     FSSVRDENFEIYMMNEDGSAQTNLTNHPDNDYDPVLSPDGTKIAFVSTRDGITQIYAM
                     NSDGTGVVRLTNTSSHDDGPVWSPDGGKIAFGSDRDGNYEIYTMNADGSGQTRMTFTA
                     DATDTAPSWSPDGSKLVFSSYGPDGSGLYVMNADGTSQTRIHFEGLSALALFPVWSPD
                     GSKILFQSDRDYFIYELYTISPDGSGLTRVTNNEMIERMPAWSPDGSRLVFWSYAEGF
                     YGSDIFTMNADGTNITQLTTSFGDDRNPSWGSVPAAPTPEPTATPTATPTPEPTPTAT
                     PTPAPGPNGRIAFASYRDGNSEIYTMNPDGTDVVRLTSDPGLDADPTWSPDGHRILFV
                     SSRGADGKRRLYTMFADGSSVTQLTATGQSYFRPSWSPDGTRIAVSSDGDGTFDVGPN
                     GVFVMNADGTGARRLTNSNDYDPTWSPDGSQIAFRRELITANAEIFVMNADGTNLVNV
                     TNTSQREGDPSWSPDGSRIAFRGLEQFGRNAVFTMSPDGSNRAQLTAFSQGNNYAPRW
                     SPDSARLVFQSDRDGNAELYTMNADGSAPSRITVNAAEDSSASWQRVPTTPAPTPTPT
                     PTATPTPTPTPSFTPPARATGKIAFMAGGNGEDIYTVNPDGTGRAPLINGNPHEEDPA
                     WSPDGSRIAYSSVQRGRFEIYTAKADGTGQTRVSDGFEISNSNDDYPSWSPDGSRIVF
                     VRNRQLWTVSSSGGASTKLSSGTDQDEQPAWSPDGSRVVFVRNWSSAQAQIFVMDADG
                     TNQVNLSNFFAGPNRSPAWSPDGSKIAFQRGSHIWVMNSDGTNQAQLTTVVDQLYSNS
                     HPAWSPDGRKIAFESTQNGVSGIYVINADGTNMSFVTANGSHPSWQGVPPLSLTKEAQ
                     PAGPVSSGGDFTYVIRLTNKHTQAATGVTVSDPLPAGTTLILADPSRGSCAGVAPGAN
                     GTVNCTLPDLAPGESVEVSIDVRVTAPGGSTLENTATARGTFADFGEQTATATASTQV
                     IEHKADLNINKFGYSQAEPGWEAGYWLYAQNFGPDTARAVTITDTLPAGVVFRSYDAT
                     PGAVCTTPAVGEAGTVTCDFGDLALYQNVYLSIYVTINAPGGTTVSNTATIAGQTTDP
                     EASNNSSTALTEVIAPPPPPPNDNFADAQEITGAAGSASGTNVRGTKEAGEPNHAGNP
                     GGSSVWYKWQAPSTGYVEFTTEGSTPDTLLGVYTGDGPASLTEVASNDDLAIMTFTSR
                     ARFQATAGTVYHIAVDGLWGWQGPLALGWAMGVGAPTPTPAPPSGGLIAFARYLRDEG
                     QSDIFTMKGDGTSQTRLTSTPDDEDEPKWSPDGTKIVFASYRRDGGGYELALMNADGT
                     GRRVLVSNSGWITSPEWSPDGSRIAFTMFNGDHEIYAVNADGTGLVQLTDNDMDDRRP
                     RWSPDGTKFVFNAYDAGFYNQVFVMNADGTNRQQVTSHQFGAHSARWVPGTDRISYSS
                     FPGIRSARADGTDERLVIGEPEEYVSDFNWSRDGSRVTFDSSGPDGVQRHYVANADGT
                     GRVLLTEGLAWGMGTQFSPDGSVITFDGNIKGPSQIYAVWSGGANQASITPGPDDSYS
                     HDWRPVNPPAGDTPAGTNVTVTENGASVTFSNVTQAGETTVTPIDPNSLQGIPGEYVI
                     NADSLAFEITTTAQYAGPIVIGFQVPGVTDPVTFSTLRVLHGEPPAPNFVDRTILAPD
                     SPSHDFAAKTVYARVTSLSPFVVTQLSDSAAPEITIASPADGATYLLNQSVAAGYTCA
                     DAGSGVATCAGMVADGAALNTSSVGTKTFTVNASDAAGNTSTKSVTYKVAYGARALFD
                     ENQANRSGSTVPIRLQLVDASGANVSASGITVTATGIVRVSDNAEGSLADPGDANPDF
                     NFRFTGGEYHFNLKTSGYATGTYILSFRAGNDPTAHSVQFKVR"
     gene            12879..13997
                     /locus_tag="VD968_13980"
     CDS             12879..13997
                     /locus_tag="VD968_13980"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HYE15548.1"
                     /translation="MAQGDARRLRELTVGDARRFAVYAAATLVAVALVAAMLGRVASA
                     ILLGVVAGALLVPVQEWLERRLRARAGSALVTIALIILPLAALVGYGWHELSEHSRHV
                     TEHKEEMADSISRSLSRYAGVGYEETRAALESAFGRAVLRSAKAAEEVREGAALLLVS
                     ATLFFFTVFYVLTRRARLASYIKLRIPGEFLPLYERLGVNVGGALRGVLWAVSIDQAA
                     KALIILALNFIFGVPLAVALALAAFLVGFFPLLGVWVVYVPVSIYLLVFRDDPAAAAI
                     YFGVGVAITIGSSLFLRPLLASKGAEAFNFYWMLVGLVAGVHAFGIPGVVLGPAILGF
                     AKAIMDTLVGDVKYETSLLKEERRQQSEQSERTAAADA"
     gene            13990..14910
                     /locus_tag="VD968_13985"
     CDS             13990..14910
                     /locus_tag="VD968_13985"
                     /inference="COORDINATES: protein motif:HMM:NF016142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HYE15549.1"
                     /translation="MPDSNLLKISEEVGAALGAGRAVVALESTVISHGLPRPLNLETA
                     RRLEQLVREGGAVPATVAVLGGKVRVGLCDEELRRLAGGEGVRKVSVRDLAVAVARGW
                     DGATTVASTAWAAHRAGIQVFATGGIGGVHRGPLPDVSADLPELARTPIAVVCSGAKS
                     VLDLPATREWLETHGVTIVGYGTDEMPAFYERQSGLPADERADTPEEVAEVVRARDAL
                     GLSSAVLVTVPVPREFEVDAALMREALAEALREAEGRGVGGRELTPFLLSRMSRGSGG
                     ATLRANAALLENNARVAASVAVALSPPPKL"
     gene            15034..15915
                     /locus_tag="VD968_13990"
     CDS             15034..15915
                     /locus_tag="VD968_13990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15550.1"
                     /translation="MKRRIFFAALLVVAAAFAGRYFSRTGGDGAGGRAPINTRESYKL
                     EPGASVEVRGINGPVEVTTSETDTAVLQVLRTGGSPDGPVQQEVVVDYSPSSLVVRGE
                     GGSDGFWRWVHGGGREQLEVRLALPRKVAFTAKGINGPLEVGEIDGSVEVLSTNGNVS
                     VEQALGRSELRGVNGNVHVGVARLGEQGMEVKGVNGNVEVRLGAGLDADIHVRGQNGN
                     VSFDVPNASKQEREGSSEVRARVGDGGAPITVRGGNGNLTFKSDVTVGRITFAPGAAE
                     GDGDMPPPPPPPPAPIN"
     gene            complement(16053..>16273)
                     /locus_tag="VD968_13995"
     CDS             complement(16053..>16273)
                     /locus_tag="VD968_13995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15551.1"
                     /translation="DAATFEFETLEQQNGNATVVRFRVENPDVRAGDVLLVLSGSEIH
                     FHGMIGMIEEGRGVATDRRGSLLPATVQ"
BASE COUNT         2828 a         6023 c         5130 g         2292 t
ORIGIN      
        1 cgacctgcgc ctcggcgccg gctacaactg ggcgggcgcc tacgagccct tcggcacgag
       61 cctacagccg ggccgccgcg gcttctactt caccatctcg tcgaagctct cgaacctctt
      121 cgacctcttc ggcacctcga gcgcgcaggg cgcggccgag ggcgccgggc agtcgcagca
      181 gcaagagcag ccgggcgacg gcaagaagcg tgaggagtga ataggacttt gagaaggacg
      241 ccccaacccg tcttgaagtg tgagggccgc gcccggcggc gggcgccgcg cccgcgcgcg
      301 acgaggcccg tcgtcaccgc ggctctcgcc gccgtgctcc tgctcctcgg gctcgggctt
      361 ccggggctcg tccccgtgcg cgaggccgag gcgcagaacg cgggcggcgg ggcgatggag
      421 ctgatacccg cggggtcgct cgtcatagct atggacaaca cgcgccagaa catcggcgcg
      481 gccttcaacc tgaaggccta cggcgtcgcc gtccggctcc tgcacgcggg cgtgcccgtc
      541 aagtgggcca tacagccggg caaggcgaag gacggcacgg acttcaccgt caccgcgcag
      601 cgcatctacc cctcggccat cggcgcggcc tcgcagagct tcagcggcgg ccccttcgtc
      661 gtccaccgag actacgccgt ccccgcgaag gcggtaatca gcgcctacgc gaccacgaac
      721 aacgtcgccg tctatgagac gacggccgac gtgaccgcgc ctatacgcca caccctgacg
      781 cacaagccga aggtcgccgt cttcgacgac ggcgggagcg ccgccatcca cacggcctac
      841 ctcgtcgcgg ccggcttcac ctccggcacg cactacgacg tcatccccgc cgcgacgctc
      901 gtcaccgtca acgccgacgc atgcttcacc atcggcaccg agccgcactg ggacggcgcg
      961 ggcggcaccg acccgcaggt caacgccata cggctgttcg tgcagtcggg cggcaacttc
     1021 ctcgccgagt gcgagggcat ctcggcctac gagaacaacg cgacctacgg ccgcttccag
     1081 acgacgacgg gcctcgttga cggcgccggc agcacgccct tccagtaccc gagccccgac
     1141 ctgccctaca gccagttcgt cggcgagatg gcgaacgcgg gcggctcgat acgcgactac
     1201 gcgcccgcgg ccggcggcgc ctaccgcgcc tcgaccgaga tacacgcgcg caagtccacg
     1261 ggcggcctgc gaggcagcga cggcagcttg gccgtgcgcg cctccgtcag ccgactggcg
     1321 ggcaccacga cgggcggctt cgtcttctac ctcggcggcc acgagtacac gaccggcgac
     1381 atcaccaaca tcaacggcat aaggctgtac atgaacgccg tgatgacgcc ttcggggcgc
     1441 ccctcgaact gcaacctcac ggtcgtcccg cgcactatcg ccggcaccat ctacgaggac
     1501 gtgaacggcg acagccagtt gggcgacgcg gtcgggcgcc ccggtgttga cgtgcgcctc
     1561 taccaggacg ggaacaacaa cggcctggtt gacgccgccg acacctacct cgccggctcc
     1621 gtgaccgacg ccgccgggca gtacagcttc caggtcgcgc cgcaggcgac gggcaacaac
     1681 tacctcgtcg ccgttgactc gaaggacgtg agcccttccg ccggcctcat cggcggccgc
     1741 ggcgacgcat gggccgagca gacctacggc gacgacccga cgaccgcggc cttcgcgctg
     1801 ggcgcgcgct tcggcgggcg ccagtcgggc gtgtccgaca gcttcaacca ggcgagcacg
     1861 acgcccgcca acaacaccta cgagcacctc gcccgcgtgg acgtatcctc ggccgacgtg
     1921 acgaacgccc acttcgcctt cagcttcaac gtcgtcacca acacgcgcgc gggcgacaac
     1981 tcggacgacg acgctttgag cgccacccgc accgtgcagg ggtcgctccg gcagttcata
     2041 cagaacgcca acgccgtcgt cggcgccaac tacatgcgct tcgtcccggc ggtcgccgag
     2101 aacgcgggca gctactggcg cgtgaccgtg acggcggcgc tcgccgcggt cgttgacgcc
     2161 tcgaccacct tcgacggcag ggcctacgac agctcgaacg gcacgtcagt acgcgacacg
     2221 aacgcgggct ctctgggcgc gggcggcacg gtcggcgtgc aggcgctcgc gctcccgcag
     2281 gttcagcgcc ccgagctgga aatcttcgac aacgccggca tagccgtcgg cctggacttg
     2341 caggcggcta actgcgcggt gcgccgcctc gccatctacg gcttcggcac cctcgcgaac
     2401 aacgacgcgc acgcacaggt gcgggtcggc aacgtcgcag gggcgctcat cgaggagaac
     2461 gtcattggct ccgcggcgac gggcttcgca gaccccggcg cggccacgcg ctcggtcggc
     2521 gacaacgtcc gcgtcgtggg cggcgacggc ggcaccctgc ggaacaacct cgtgggcttc
     2581 acccagggca agggcataca gctcggcggc ggcgccaacg gctggctcgt cgagggcaac
     2641 gaggttcgcg gcaacggcat aaacaactct aacctcgacg gcatagaagt tgagggcggc
     2701 agcaacaccg ccacgatccg aggcaacctc ttcgccggca acgaggcctg cggcatagac
     2761 acgtaccagt cctccggctc gaacacggtc gagaacaaca ccgtcaccgg caacggcgtc
     2821 gggccgaacg cgaacatcga gtcgccgggc gtgcgcctct acggcacggg cagcctcgtc
     2881 cgcctcaacg tcatcgccgc caacttcggc gctggcgtca tggtcaactc cgcgtcgtcc
     2941 gctaacacca tctcgcgcaa ctccgtctat gccaacggca ccatcacgaa caaggccggc
     3001 gccgcggcga gcaaccagat aggcatagac ctgctatcgg cggccgactc gcagacgacc
     3061 ggcaccgcgc ccttcgtcac gcggaacgac tcgggcgacg ccgacgcggg cgcgaacggc
     3121 ctgctcaact tcccggtgct cacgctcgcg cgcctctcga acggcaacct cgtgctgcaa
     3181 ggctacgcga gccccggcgc cgccatagag tttttcgtcg ctgcgcccga cccctccggc
     3241 ttcggcgagg gccagactta cctcctgacc ctgactgagg gctcggcggc cgataccgac
     3301 gcgacgaccg gcacctacac gagcccggtg aacggcctga acgtgggcac ggacacgacg
     3361 aacctcttca ccttcacggt gccgctgccg ccgggcgtcg ccgtaggcac ggtgctgacg
     3421 gcgactgcca cggtctcggg cagcacgtcg gagttcagcg gcaacgtcac cgtctcgctc
     3481 gcgccgcccg aggtcaggct cgtcaaggcg tgcaccgccc cggccgactg cctgcgcgtc
     3541 gagggccagc cgcccggcac agacctgacc tactcgatag acttcacgaa cgtcggcggc
     3601 tccccggcgc aggtattcgt catcaaagac cccatcccgg ccagcacgga cttcaaggtc
     3661 ggctcggcga cgacgaacct cggcacgacg ggcatgaccg tcacggtgga atattccgag
     3721 gacaacggcg ccaactacaa ctacacgccc gcgagcggcg cgggcggcgc gcccgcaggc
     3781 tacgaccgaa aggtgacgca cgtgcgctgg acgttcgcgg gcgcgctccc gagcgcctcg
     3841 cccaacaacg ccggcagcgt cggcctcacc gtccgaatac ggtaggccgg gacgacgtga
     3901 taaagagcta aggggcgcgc cgagacgacc ggcgcgcccc ttagctcttt caccttcatc
     3961 gcgcctcggc ttgacaacgg gggcgatttc cataagatag ggcgtgttcg cgcttggctg
     4021 gttttgagca agtgaaagcg tcgaagccct tacccgaatt tcttcccgct ctacttcccg
     4081 aaaataagcc cgacagtcac gagagcgaag ggtagcgaca ctcccgattg agtaaggcgg
     4141 ccgaactgcc tgacagcggt ccctccccga agtctcacaa gctcaacatc attttcgaca
     4201 gtcaattcgt taagtagccg tcgaacgccc gttcgaccgt cccggctgga ggccccgcct
     4261 aaggggcttg ccggccgcct cgcggcgcca actcgtgcgc cgaacggccc tgctgcccct
     4321 taccacccta aggagtcttg ttcccccatg agaaacgaca cgtccgtccg acgcctctca
     4381 agcgtcctgc tctcaacgct cctcctgctc tcgaacttcg tcgccatgcc ggccgcggcc
     4441 cgagccgcct cgccgcagca ggcgcagata gtcttagacg gcttcgtaaa gaaccagttc
     4501 ggcgcgccgg tcgcgggcgc gctcgtcacg ctctcgggcg acgcggccgg ccaggtgacg
     4561 accggctcgg acggctacta ctccttcaac gtgcctgccg cctgcggcgt cgcctaccag
     4621 ctagcggcca ccgtaaacgg cgtgcaggcc ggcggcgcgc gctccgtcag cggctgcgtg
     4681 ctctcgaact accgcttcga ggacttcata taccaggccc cctacaacat cacgctctcc
     4741 ggctacgtcc gcaccacgac gggcgccggc gcccgcgacg tgaccgtgaa cctgacgggc
     4801 gactcgacgc agaccacaca gaccgacccg acgggctact actccttcag cgtccccgcc
     4861 gggtgcccgc gcacctacga ggtcggcatc gtccgcctcg acggcctcac gggcggcaac
     4921 cagtcaataa gcggctgcct gacgggcgac cacgtcttct ccgacttcgt ctataacccg
     4981 ccgccgcccg cgaacggcaa gatagccttc gtcagcatgc gcaccgtcgg ccaagagatt
     5041 tggacgatga acccggacgg cacgaatcag gcgcgcgtca cgctcatcta cggcgtgacc
     5101 gaccctgcgt ggtcgcccga cggcgccaag ttcgccttca cctaccacaa cgacatacac
     5161 gtcatcaacg ccgacggcac gggcctcacc cagctcacca cgttcgccga ggcggacttc
     5221 caccccgagt ggtcgcccga cgggacaaag atagccttcg cccgccgcga caacttcggc
     5281 aacgcgaaca tatacgtgat gaacgcggac ggctccggcc agacgcgcct caccgacaac
     5341 ccctacaacg acgcgcaccc gtcgtggtcg cccgacggca ccaaaatagc ctattcgagc
     5401 gagaaccccg cgaacctccc gctcacctac tacgaggtct tcaccatcaa cccggacggg
     5461 acggggcgca cgcgcgtaac caacacgcag acgcagttcc agacctcaaa cgccacgcag
     5521 cccgactggt cgcccgacgg gatgaagata gccttcgtca gcaacaggtc gaacacggcg
     5581 ggcggcggca gcgagctgta cgtcgtgaac gccgacggca ccggcgaggt gcgcctcacg
     5641 aacaacacgg aggacgacag cacgcccgag tggtcacccg acggccagaa gatagccttc
     5701 acgcgctaca tcaacaacaa cagcagcacc cccgaaatct tcgtgatgaa cgccgacggc
     5761 acggggcagc agaacctctc gaacgacccc ggctacgacg cccagcccac atggcgccgc
     5821 gccccggccc cgacgcctac gcccacgcca acggccacgc ccacggcaac tcctacggcc
     5881 actcctacgc cgaccgcgac ccctacggcc acgccgaccg ctactgcgac gccgacgccc
     5941 acgccccagt cgtgccagac gcagaactcg ataacgatgc tgccgccccg ctgcggcgcg
     6001 gggctcgtgc agagttcgtc tgtctccggc gcgctcttcg agaagaccga ggcgacgcgc
     6061 ggttcctact cattccactc gatgatgagc gccgaggcca tgctcggcga cggcaccatc
     6121 gagttcacgc tgccgcagcg cggcacggcc tacgtcggcc tgacggagac cgagccctgg
     6181 tgcggctacg actcggttga ctacctcttc cacgtggacg ccaactacgg cgggcagagc
     6241 ggcggcatct actacgtgcg cgagcaccag tcgcccggcg cccgccccga ctccggcagc
     6301 ttcagggcca ccgagcaccc cctcttccgc atcacgcgca cgggcaacgt ggtgagctac
     6361 tacgtcaaca acgcgctcta ctgggtgagc gacaagcagt ccggggcgcc gctccgcctc
     6421 tacgtgctgc tctacgcgcc caacacgcag gtgcaggtct cggagttcac ggcctcgggc
     6481 ggcctgaagg tgcgcggcac ggcgccgcag atgcaggacg tgacgtggca gaacctcgtc
     6541 aacgtcaccg ccgacggcaa ctcgataacg aagacgagcg gggcgagcga gggctacgac
     6601 gccggcgcct cctccgcgca gcagataacg cgcgacaact ccttctaccg cttcaagccg
     6661 gcgcggtcga acgactacat gctgacggcg ctggcggcca gcgacccgaa cgccagcagc
     6721 cccgtcgccc ccgtctcgct ctacttctcc aacggctcgc tctacaactg gacgaccggc
     6781 ctcggcggaa gcctcggcac cttcaactcc gagagcgtct tcgagctggc cgtccacaac
     6841 ggggccgttg actactaccg cctcgacccc tcgaccggcg agcgcacgcg catcaccggc
     6901 cacggcttca aggtcagctt cccgctgctc ttcgacacct cgctccgcac gacgaactcg
     6961 ggcgtgcgcg acgtgcagtt cggccagtac ccctacgtgt cgccctgcga ggccgacccg
     7021 acgccgaccc cgacgccctc gccgaccccg acgcccacgc cctcgggcgc gcgcgtcggc
     7081 aagatagtct tctccagcgt ccgcgacgag aacttcgaaa tctacatgat gaacgaggac
     7141 ggctccgcgc agacgaacct gacgaaccac cccgacaacg actacgaccc cgtgctctcg
     7201 cccgacggga cgaagatagc tttcgtcagc acccgcgacg gcatcacgca gatttacgcg
     7261 atgaactcgg acggcacggg cgtggtgcgc ctgaccaaca cctcctcgca cgacgacggc
     7321 cccgtctggt cgcccgacgg cggcaagata gccttcggct cagaccgcga cggcaactac
     7381 gaaatctaca cgatgaacgc cgacggctcc ggccagacgc gcatgacctt cacggccgac
     7441 gcgaccgaca cggcgccctc ctggtcgccc gacggctcga agctcgtctt ttcgagctac
     7501 ggccccgacg ggagcggcct ctacgttatg aacgccgacg gcacaagcca gacgcgcata
     7561 cacttcgagg ggctctcggc gctcgcgctc ttccccgtct ggtcgcccga cggctcgaag
     7621 attctcttcc agagcgaccg cgactacttc atctacgagc tctacaccat aagccccgac
     7681 ggctccggcc ttacccgcgt gacgaacaac gagatgatcg agcggatgcc ggcgtggtcg
     7741 cccgacggct cgcggctcgt cttctggagc tacgccgaag gcttctacgg ctccgacatc
     7801 ttcacgatga acgccgacgg gacgaacata acgcagctca ccacgtcctt cggcgacgac
     7861 cgcaaccctt cgtggggctc cgtcccggcg gctcctacgc ccgagcccac ggccacgcct
     7921 accgcgacgc ccacacccga gccgacgccc acggcgaccc cgacgcccgc gcccggcccg
     7981 aacggccgca tagccttcgc cagctaccgc gacggcaaca gcgaaatcta cacgatgaac
     8041 ccggacggta ctgacgttgt gcggctgacg agcgaccccg gcctcgacgc agacccgacg
     8101 tggtcgcccg acggccacag gattctcttc gtcagcagcc gcggcgcgga cggcaagcgc
     8161 cgcctctaca cgatgttcgc cgacggctcg agcgtcacac agttgacggc cacaggccag
     8221 tcttacttcc ggccttcctg gtcgcccgac ggcaccagga tagccgtttc aagcgacggc
     8281 gacggcacct tcgacgtcgg ccccaacggc gtattcgtca tgaacgccga cgggacgggc
     8341 gcgcgccgcc tgacgaactc taacgactac gacccgacct ggtcgcccga cggctcgcag
     8401 atagccttcc gccgcgagct gataaccgcc aacgccgaaa tcttcgtgat gaacgccgac
     8461 ggcactaacc tcgtcaacgt gaccaacacc tcgcagcgcg agggcgaccc gtcgtggtcg
     8521 cctgacggct cgcgcatagc cttccgcggc ttggagcagt tcggccgaaa cgccgtcttc
     8581 acgatgagcc ccgacggctc gaaccgcgcg cagctcacgg ccttctcgca gggcaacaac
     8641 tacgcgcccc gctggtcgcc cgacagcgcg cgcctcgtct tccagagcga ccgcgacggc
     8701 aacgccgagc tctacacgat gaacgccgac ggctcggcgc cgtcgcgcat aaccgtcaac
     8761 gcggcggagg attcgagcgc ctcgtggcag cgcgtgccga ccacgcccgc cccgacgccg
     8821 acgcccacgc ctacggcgac gcccacgccc acacctacgc cgtcgttcac cccgcccgcg
     8881 cgcgccaccg ggaagattgc cttcatggcc ggcggcaacg gcgaggacat ctacaccgtc
     8941 aaccccgacg ggacgggccg agccccgctc atcaacggca acccgcacga ggaagacccc
     9001 gcgtggtcgc ccgacgggag ccgcattgcc tattcgagcg tccagcgcgg ccgcttcgaa
     9061 atctacacgg cgaaggccga cgggacgggg cagacgcgcg tctccgacgg cttcgagatt
     9121 tccaactcga acgacgacta cccgtcctgg tcgcccgacg gctcgcggat agtcttcgtc
     9181 cgcaaccgcc agctctggac ggtcagctcc tcgggcggcg cctccacgaa gctaagctcg
     9241 gggacggatc aggacgagca gcccgcgtgg tcgcccgacg gctcgcgggt agtcttcgtc
     9301 cgcaactggt cgagcgcgca ggcgcaaatc ttcgtgatgg acgccgacgg cacgaaccag
     9361 gtcaacctca gcaacttctt cgccggcccg aaccgctcgc ccgcgtggtc gcctgacggc
     9421 tcgaagatag ccttccagcg cggtagccac atctgggtga tgaactcgga cggcactaac
     9481 caggcgcagc tcacgacggt cgttgaccag ctctacagca actcgcaccc cgcgtggtcg
     9541 cccgacgggc ggaagatagc cttcgagagc acgcagaacg gcgtctccgg catctacgtc
     9601 atcaacgccg acggcacgaa catgtcgttc gtcaccgcga acggctcgca cccctcctgg
     9661 cagggcgtgc cgccgctctc tctgacgaag gaggcgcagc ccgccggccc cgtctcatcg
     9721 ggcggcgact tcacctacgt catacggctc acgaacaagc acacgcaggc cgcgacgggc
     9781 gtcacggtct ccgacccgct ccccgcgggc accacgctca tactcgcaga cccgagccgc
     9841 ggctcctgcg cgggcgtcgc gcccggcgcc aacggcaccg tcaactgcac gctgcccgac
     9901 ctcgcgcccg gcgagagcgt cgaggtctcg attgacgtgc gcgtcaccgc ccccggcggc
     9961 tccacgctag agaacaccgc cacggcccgc ggcaccttcg ccgacttcgg cgagcagacc
    10021 gctacggcca cggctagcac acaggtcatc gagcacaagg cagacctcaa catcaacaag
    10081 ttcggctact cccaggccga gcccggatgg gaggccggct actggctcta cgcgcagaac
    10141 ttcggccccg acacggcgcg cgccgtgacg ataacggaca cgctgcccgc gggcgtcgtc
    10201 ttccgctcct acgacgcaac gcccggcgcg gtctgcacga ccccggccgt aggcgaggcg
    10261 ggcacggtca catgcgactt cggcgacctc gccctctacc agaacgtcta tctctccatc
    10321 tacgtcacca tcaacgcgcc cggcggcacc acggtctcga acacggcaac catcgccgga
    10381 cagaccacag accccgaggc gtcgaacaac tcctcgaccg cactgacgga agtcatagcg
    10441 ccgccgccac cgccgcccaa cgacaacttc gccgacgcgc aggagattac cggcgcggcc
    10501 ggctccgcgt cggggacgaa cgtgcgcggc acgaaggagg cgggcgagcc caaccacgcg
    10561 ggcaaccccg gcggctcgtc cgtctggtac aagtggcagg cgccctccac cggctacgtc
    10621 gagttcacga cagagggcag cacgcccgac acgctgctcg gcgtctatac gggcgacggc
    10681 ccagcctccc tgacagaggt cgcctcgaac gacgacctcg ccatcatgac cttcaccagc
    10741 cgcgcgcgct tccaggccac ggccggcacc gtctatcaca tagcggttga cggcctgtgg
    10801 ggctggcaag gccccttggc cctgggctgg gcgatgggcg tgggcgcgcc cacacccact
    10861 ccggcgccgc cctccggtgg gctcatagcc ttcgcgcgct acctgcgcga cgagggccag
    10921 agcgacatct tcacgatgaa gggcgacggt acgagccaga cgcgcctgac ctcgacgccc
    10981 gacgacgagg acgagcccaa gtggtcgccc gacggcacga agatagtctt cgccagctac
    11041 cgccgcgacg gcggcggcta cgaactggcg ctgatgaacg ccgacggcac cggccgtcgc
    11101 gtgctcgtca gcaactcggg ctggataacc agccccgagt ggtcgcccga cggctcgcgc
    11161 attgccttca ccatgttcaa cggcgaccac gaaatctacg ccgtgaacgc cgacggcacg
    11221 ggcctcgtgc agctcacgga taacgacatg gacgaccggc gcccgcgctg gtcgcccgac
    11281 ggcacgaagt tcgtcttcaa cgcctacgac gcgggcttct acaaccaggt cttcgtcatg
    11341 aacgccgacg gcactaaccg gcagcaggtg acgagccacc agttcggcgc gcacagcgcc
    11401 cgctgggtgc ccggcaccga ccgcatctcc tactcgagct tccccggcat acgctcggcc
    11461 cgcgccgacg gaaccgacga gcggctcgtg ataggcgagc cggaagagta cgtctccgac
    11521 ttcaactggt cgcgcgacgg ctcgcgcgta acattcgaca gctccggccc cgacggcgta
    11581 cagcgccact acgtcgccaa cgccgacggc acgggccgag tgctcctgac cgagggcctg
    11641 gcatggggca tgggcacgca gttctcgccc gacggctcgg tgatcacctt cgacggcaac
    11701 atcaaggggc cgagccagat ttacgcggtc tggtcgggcg gcgccaacca ggcgagcatc
    11761 acgcccggcc cggacgacag ctacagccac gactggcggc ccgtcaaccc gcccgcgggc
    11821 gacacgcccg caggcactaa cgtcaccgtc acggagaacg gtgcctcggt caccttctcg
    11881 aacgtcacgc aggcgggcga gacgaccgtg acgccgattg acccgaactc gctacagggc
    11941 atacccggcg agtacgtcat aaacgccgac agcctggcct tcgagataac gacgacggcg
    12001 cagtacgccg gcccgatcgt catcggcttc caggtgccgg gcgtcacgga cccggtaacg
    12061 ttcagcacgc tccgagtgct gcacggcgag ccgccggcgc cgaacttcgt tgaccggacg
    12121 atactggcgc ccgactcgcc ctcgcacgac ttcgcggcga agacggtcta tgcgcgcgtc
    12181 acgtcgctca gcccgttcgt cgtcacgcag ctctccgact cggccgcgcc ggagataacc
    12241 atcgcgtcgc ccgccgacgg cgcgacctac cttctcaacc agagcgtggc cgcaggctac
    12301 acctgcgcgg acgcgggctc cggcgtcgcc acctgcgccg gcatggtcgc cgacggcgcg
    12361 gctctaaaca cgtcttcggt cggcacgaag accttcaccg tcaacgcgtc ggacgcggcc
    12421 gggaacacct cgaccaagtc cgtaacttac aaggtcgcct acggcgcgcg cgctctcttc
    12481 gacgagaacc aggcgaacag gagcggcagc acagtcccca tcaggctgca actcgttgac
    12541 gcctctggcg ctaacgtctc ggcctcgggc ataacggtca cggccacggg catcgtgcgc
    12601 gtctccgaca acgccgaggg ctcgctcgca gaccccggcg acgcgaaccc cgacttcaac
    12661 ttccgcttca cgggcggcga gtaccacttc aacctcaaga cgagcggcta cgccaccggc
    12721 acttacatct tgagcttcag ggccggcaac gaccccacgg ctcactcggt gcagttcaag
    12781 gtgaggtagc agcccgactg acttaacagg cgggagggcc gcggcgacgc tagctagcgt
    12841 cgccgcggcc ctcacttttg tgtgctagat tagcgcccat ggcccagggc gacgcgaggc
    12901 gtttgaggga gctgacggtc ggcgacgcgc gccgcttcgc cgtctatgcg gcggctacgc
    12961 tcgtggccgt cgcgctcgtc gccgcgatgc tgggccgcgt ggcgtcggcg atcctgctcg
    13021 gagtggtcgc gggcgcgctg ctagtccccg tgcaggagtg gctggaacgg cggctgcggg
    13081 cgcgggccgg cagcgccctc gtaacaatcg cgctcataat cctcccgctc gcggcgctcg
    13141 tcggctacgg ctggcacgaa ctgtccgagc actcgcgcca cgtgacggag cacaaggagg
    13201 agatggccga ctcaatcagc cgttcgctct cgcgctacgc cggggtcggc tacgaggaga
    13261 cgcgcgccgc gctcgagtcg gccttcggcc gcgcggtgct gcgctcggcg aaggcggccg
    13321 aggaggtgcg cgagggcgct gccctcctcc tcgtctcggc cacgctcttc ttcttcacgg
    13381 tcttttacgt gctgacgcgg cgggcacgcc tcgcctccta cataaagctt cgcatccccg
    13441 gcgagttcct cccgctctac gagcgcctgg gcgtgaacgt gggcggcgcc ctgcgcggcg
    13501 tgctctgggc cgtctccatt gaccaggccg ctaaggccct gatcatcctc gcgctcaact
    13561 tcatcttcgg ggtgccgctc gctgtggcgc tcgcgctcgc cgcattcctc gtcggcttct
    13621 tccctctact cggcgtgtgg gtcgtttacg tgcccgtcag catctacctg ctcgttttcc
    13681 gcgacgaccc cgcggccgcc gcgatttact tcggcgtggg cgtggcgata accatcggct
    13741 cgtcgctctt cctacggccg ctactcgcgt cgaagggcgc cgaggcattt aacttctact
    13801 ggatgctcgt gggcctcgtc gccggggtcc acgccttcgg catacccggc gtggtcctcg
    13861 gccccgccat cctcgggttc gctaaggcca tcatggacac cctggtcggg gacgttaaat
    13921 acgagacatc cctcctgaag gaagagaggc ggcagcagtc agaacagtct gagaggacgg
    13981 cggcggccga tgcctgacag caaccttctc aagataagcg aagaggtcgg ggctgcgctc
    14041 ggcgcgggcc gtgcggtcgt cgcgctcgag tccaccgtaa tctcacacgg gctgccgcgg
    14101 ccgctgaatt tggagactgc gcggcggctc gaacagttgg tgcgcgaggg aggcgccgtg
    14161 cctgcgacgg tggcggtgct cggcggcaag gtgcgtgtcg gcctgtgtga cgaggaactt
    14221 cggcggctgg ccgggggcga gggcgtgcga aaggtgagcg tgcgcgacct ggccgtggcc
    14281 gtcgcgcgcg ggtgggacgg ggcgacgacc gtggcctcga ccgcgtgggc ggcgcacagg
    14341 gccgggatac aggtcttcgc gacgggcggc atcggcggcg tccaccgcgg cccgctcccc
    14401 gacgtttcgg ccgacttgcc cgagcttgca cgcacgccga ttgcggtcgt ctgctcgggc
    14461 gcgaagtctg tgctcgacct gcctgcgacg cgtgagtggc ttgagacgca cggcgtcaca
    14521 atcgtcggct acggcacgga cgagatgcct gccttctacg agcgacaaag cggccttccg
    14581 gcggacgagc gcgccgacac gcccgaggag gtcgcggagg tcgtgcgcgc gcgcgacgcg
    14641 ctcggcctct cgtcggccgt gctagtgact gtccccgtgc cgcgcgagtt cgaggttgac
    14701 gccgcgttga tgagagaggc gctggccgaa gcccttcggg aggccgaggg gcgcggcgtc
    14761 ggcgggcgcg agttgactcc cttcctgctc tcgcgcatga gccgcgggag cggcggcgcg
    14821 acgctccgcg ccaacgcggc cctgcttgag aacaacgcgc gcgtcgccgc ctcggtcgcc
    14881 gtcgccctct ccccgccgcc caaattatga gaacttaggc gccgcgctcg tcgttcttct
    14941 tgctggccgc gcccggcgcc ggccgctgat aagtctcggc aatcaaacgc aagtagaggc
    15001 gggccggccg gcggcccgcg ggagaggtca tcaatgaagc gtcgtatttt tttcgcggcc
    15061 ctgctcgtcg tcgccgcggc cttcgcgggc cgctacttct cgcgcacggg cggcgacggc
    15121 gcgggcggcc gagccccgat caacacgcgc gagagctaca agctcgagcc cggcgcgagc
    15181 gtcgaggttc gaggcatcaa cggccccgtc gaggtcacga cttccgagac cgatactgcc
    15241 gtcctgcaag tgctgcgcac gggcgggagc ccggacggcc cggttcagca ggaagtcgtg
    15301 gttgactact cgccttcgag cctcgtcgtg cgcggcgagg gcgggagcga cggcttctgg
    15361 cggtgggtgc acggcggcgg ccgggagcag cttgaagtca ggctcgcgct cccgcgcaag
    15421 gtcgcgttca cggcgaaggg cataaacggc ccgctcgaag tcggagagat tgacgggtcg
    15481 gtcgaggtct tgagcacgaa cggcaacgtc agcgtcgagc aggcgctggg ccgctctgag
    15541 ctgaggggcg taaacggcaa cgtccacgtg ggcgtcgcgc gcctcggcga gcaggggatg
    15601 gaggtgaagg gcgtgaacgg caacgtggag gttcggctgg gcgccgggct cgacgccgac
    15661 atccacgtgc gcggtcagaa cggcaacgtc agctttgatg tgccgaacgc gtcgaagcag
    15721 gagcgcgagg ggagctccga agttcgcgcg cgcgtgggag acggcggcgc cccgatcacg
    15781 gtcaggggcg gtaacggcaa cctgactttc aagtctgacg tcaccgtcgg ccgcatcacg
    15841 ttcgcgcccg gcgccgccga aggcgacggg gacatgccgc cgccccctcc cccgccgccc
    15901 gcgccgatta actgaagaaa cgcccagaga gacggcctgg cccgaagtcg tccaaaagtg
    15961 aaggcccgcc ggagattcgc ttgaacctcc ggcgggcctc acgattttcg ggcgacagcg
    16021 tcgggcgcgg ctttcctcag ccgccgcgtg gcttactgaa ctgtcgcggg tagcagcgag
    16081 ccgcggcggt ctgtggcgac gccgcgtccc tcctctatca tgcctatcat tccgtggaag
    16141 tgtatttcgc tgcccgagag cacgagcagc acgtcgccgg cgcgcacgtc cgggttctcg
    16201 acgcggaagc gcacgaccgt ggcgttcccg ttctgctgtt cgagcgtctc gaactcgaag
    16261 gtggcggcgt caa
//
LOCUS       DASPKR010000521         4006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1244125, whole genome shotgun sequence.
ACCESSION   DASPKR010000521 DASPKR010000000
VERSION     DASPKR010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4006)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4006
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1244125"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1119
                     /locus_tag="VD968_14000"
     CDS             <1..1119
                     /locus_tag="VD968_14000"
                     /inference="COORDINATES: protein motif:HMM:NF026968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HYE15552.1"
                     /translation="GTFQYPSPNESSRAFVARVAEEAGRERGTLVMPMTERTTLPLSE
                     HRDEISAAGGRMVLPPHATVLRAFDKAETTKLAASLGVEVPQTAAVEGAADARRLAGS
                     LTYPVVLKARASEELTPGGGVRTTGAPLYARGPEEFLAAFETLSARASSVLAQEYVEG
                     AGAGYFALMREGEPRAEFAHRRLRDVRPTGSGSSLRVSARADGRVRDAALSILRALGW
                     HGVAMVEFRVRADGTPVFMEVNGRFWNSLALAVHAGADFPRLLAEMAERGDVEAPPPY
                     REGVRCRWLLGDARHLLEVLRGAPRGYAGSFPGRAATLSAFLKPVRGTFHDNFSLSDP
                     LPEVGDWLDFTFRKLPARARARAAARRDLHAQGSHSHA"
     gene            1091..1888
                     /locus_tag="VD968_14005"
     CDS             1091..1888
                     /locus_tag="VD968_14005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15553.1"
                     /translation="MLKGAIHTHSTYSDGDLTLGELREAFVAEGCRFAMMTDHAEYFD
                     AARLRDYVSECESLSDDRFLFVAGLEYECEHRMHLLGYGVTSLAGTTDPQRVIEHIKG
                     EGGVSVIAHPMNSMFDWIETFDALPDGIETWNTKYDGQYAPRPGTFRLLARLQERAPR
                     MRAFYGMDLHWKDQPRAIFNLVRRDEPARDALLEAFRGGDYTGLKDGAELPSDGALPA
                     DVLARYGEVNDRYMRKQRLFRSVKKFSGAVGRGLPEPVKARIRRIFS"
     gene            1885..2658
                     /locus_tag="VD968_14010"
     CDS             1885..2658
                     /locus_tag="VD968_14010"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HYE15554.1"
                     /translation="MTGGTVFLMYHELERAGRELCDSGPGYVRYVLAEGDFRAHLSRL
                     RDAGLRGISTGAALAEGFPSDSVAITFDDGCASDLEIAAPLLREAGAGATFYVVSGFL
                     GRRGYMTASQVRELSDLGFEVGSHSHTHRYLTDLGAGDLRGELSGSKARLEDSTGRAV
                     EHFSCPGGRWSRAVAEAAREAGYKSVATSRPGRNAAGAHPFALSRVAVMRGMSADGFA
                     ALCRAEGLLRRRAQELALGAAKRLLGNSAYERLRGAVLD"
     gene            2711..>4006
                     /locus_tag="VD968_14015"
     CDS             2711..>4006
                     /locus_tag="VD968_14015"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HYE15555.1"
                     /translation="MKLSIFGLGYVGCVSAACFAKEGHDVLGVDVNPLKVEIINSGRS
                     PIVEAGVGELIGEMVREGRLRATTDTAEAVRESEISLVCVGTPSNANGSLDLTYVKRV
                     CKEIGAALEAKAGRHTVVIRSTMLPGTIESVVVPTLEVYSGKKEGRDFGVCINPEFLR
                     EGSSLKDFYAPPFTLIGADDEDVAAQVRRLYGRIDAPVYVTPVKAAEMVKYACNCFHA
                     LKVSFANEIGNVCKGLGIDSHRVMEVFCQDTKLNLSPYYLKPGFAFGGSCLPKDLRAL
                     QYKAKELDVETPVLHAALQSNRLQVERAVSMVLATGSRRVGVLGFSFKAGTDDLRESP
                     MVSLIETLIGKGMKLSVYDRDVSLARLFGANKEYIEREIPHISQLMCGSVEEVLENSD
                     VIVVGNKSEEFRAVDGKLRAGQVLIDLVRLFDSRTSDETY"
BASE COUNT          617 a         1397 c         1352 g          640 t
ORIGIN      
        1 gggactttcc agtacccttc gccgaacgag tcgtcgcgcg ccttcgtcgc gcgcgtggcc
       61 gaagaggcgg ggcgcgagcg cggcacgctc gtgatgccca tgacggagcg cacgacgctc
      121 ccgctctccg agcaccgcga cgaaatctcc gccgcgggcg ggcgcatggt cttgccgccg
      181 cacgcaacgg tgcttcgcgc cttcgacaag gccgagacga ctaagctcgc cgcctcgctc
      241 ggcgtcgagg tgccgcagac cgccgcggtc gagggcgcgg ccgacgcgcg ccggctcgcc
      301 ggctcgctca cttacccggt cgtcctgaag gcgcgcgcat ccgaagaact gacgcccgga
      361 gggggcgtgc gcacgacggg cgcgccgctc tacgcgcgcg gcccggaaga gttcctcgcc
      421 gcattcgaga ccttgagcgc gcgcgcttcc tcggtgctcg cgcaggagta cgtcgagggc
      481 gcgggcgcgg gctacttcgc cttgatgcga gaaggcgagc cgcgcgcgga gttcgcgcac
      541 aggcgactgc gcgacgttcg gccgacgggc tcgggcagct ccctgcgcgt aagcgctcgc
      601 gccgacgggc gagtgcgcga cgcggccttg agcatccttc gcgcgctcgg ctggcacggc
      661 gtcgcgatgg tcgagttccg cgtgagggcg gacggcacgc ccgtcttcat ggaggtcaac
      721 ggccgcttct ggaattcgct cgcgctcgcc gtccacgcgg gcgcggactt cccgcgcctg
      781 ctcgcggaga tggccgagcg cggcgacgtg gaagcacctc cgccctaccg cgagggcgtc
      841 cgctgccgct ggcttttggg cgacgcacgg cacctcctgg aagttttgag gggcgcgccg
      901 cgcggctacg cgggctcgtt ccccggccgc gccgcgacgc tctcggcttt cctgaaaccc
      961 gtgcgcggca ccttccacga caacttcagt ctgtccgacc cgctgcccga ggtaggcgac
     1021 tggctcgact tcaccttcag aaaactcccg gcccgtgcgc gcgcgcgcgc ggccgcgcga
     1081 agggatttgc atgctcaagg gagccattca cacgcatagc acctactcgg acggcgacct
     1141 cacgctcggc gagcttcgcg aggcgttcgt cgccgagggg tgcaggttcg cgatgatgac
     1201 cgaccacgcc gagtatttcg acgcggcgcg gctccgcgac tacgtctccg agtgcgagtc
     1261 gctctcggac gaccgcttcc tcttcgtcgc ggggctcgag tacgagtgcg agcaccgcat
     1321 gcacctcctc ggctacggcg tgacctcgct cgcaggcacc accgacccgc agcgcgtcat
     1381 cgagcacatc aagggcgaag gcggcgtctc cgtcatcgcc cacccgatga actcgatgtt
     1441 cgattggatc gaaacgttcg acgcgctgcc ggacggcata gagacctgga acacgaagta
     1501 cgacgggcag tacgcccccc gtcccggcac cttccggctg ctcgcccgcc tgcaagagcg
     1561 cgcgccgcgg atgcgcgcct tctacggcat ggacctgcac tggaaggatc agccccgcgc
     1621 catcttcaac ctcgtgcgcc gggatgagcc cgcgcgcgac gcgctgctcg aagccttccg
     1681 cgggggcgac tacacggggc tcaaggacgg cgcggagctg ccctccgacg gggcgcttcc
     1741 cgccgacgtg ctcgcgcgct acggcgaggt gaacgaccgc tacatgcgga agcagcggct
     1801 cttcaggagc gtcaagaagt tctcgggcgc ggtaggccgt ggcttgcctg agccggtcaa
     1861 ggcgcgcata agaaggattt tctcatgacg ggcggcacgg tcttcctcat gtaccacgag
     1921 ctcgagcgcg cgggccgcga gctttgcgac tccggccccg gctacgtgcg ctacgttctc
     1981 gccgaggggg acttccgcgc gcacctgtcg cgcctgcgag acgccggcct gcgcgggatt
     2041 tcgacgggcg ccgcgctcgc cgaagggttc ccatccgact ccgtcgccat caccttcgac
     2101 gacggctgcg cctcagattt ggaaatcgcc gcgccgctgc tcagggaggc gggcgcgggg
     2161 gcgaccttct acgtcgtctc gggctttctg ggccggcgcg gctacatgac ggcgagccag
     2221 gttcgggagc tctccgacct cggcttcgag gtcggctctc actcccacac gcaccgctat
     2281 ctcacggact tgggcgccgg ggatttgcgg ggcgaacttt cgggctcgaa ggcgaggctg
     2341 gaagattcga cgggccgcgc cgtcgagcac ttctcctgcc ccggcggccg ctggtctcgc
     2401 gccgtcgcag aagccgcgcg cgaggccggc tacaagtccg tagccaccag ccgccccggc
     2461 agaaatgcgg ccggcgcgca ccccttcgcg ctctcgcgcg tggccgtgat gcgcggcatg
     2521 agcgccgatg gcttcgcagc cctctgccgc gccgagggcc tcctgcgccg acgcgcgcag
     2581 gagctggcgc tcggcgccgc caagcgactg ctcggcaact ccgcttacga gcgcctgcgc
     2641 ggcgccgtcc tcgactgacc ccttcgggcc ttccccggcc gcggccgggc tttcactgac
     2701 gaagacattt atgaaactga gcatattcgg tctgggctac gtcggctgcg tctcggccgc
     2761 gtgtttcgcc aaggagggcc acgacgttct gggcgtggac gtgaacccgt tgaaggtcga
     2821 gataatcaac tcggggcgca gccccatcgt cgaggccggc gtcggcgagc tgatcggcga
     2881 gatggtcagg gaagggcgcc tgcgcgccac gaccgacacg gccgaggccg tgcgcgagtc
     2941 cgaaatctcg ctcgtctgcg tcggcacgcc gtcgaacgcg aacggcagcc tcgacctcac
     3001 ttacgttaag cgcgtctgca aggagatagg cgcggcgctc gaagcgaagg cgggccgcca
     3061 caccgtcgtc atacgcagca cgatgctgcc cggcaccatc gagtcggtcg tcgtccccac
     3121 gctcgaagtc tattcgggca agaaggaggg gcgcgacttc ggcgtctgca ttaacccgga
     3181 gttcctgcgc gaggggagct cgctgaaaga cttttacgcg ccgcccttca cgctcatcgg
     3241 cgccgacgac gaggacgttg ccgcgcaggt gcgccgcctc tacggccgca tagacgcgcc
     3301 cgtctatgtc acgcccgtca aggcggccga gatggtcaag tacgcctgca actgcttcca
     3361 cgccctgaag gtctccttcg ccaacgagat cggcaacgtc tgcaaggggc tcggcataga
     3421 cagccaccgc gtcatggagg tcttctgcca ggacacgaag ctgaacctgt cgccctacta
     3481 tctgaagcct ggcttcgcct tcggcggctc ctgcctcccg aaggacttgc gcgccttgca
     3541 gtacaaggcc aaagagctgg acgtcgagac gcccgtcctg cacgctgcgc tccagagcaa
     3601 ccggcttcag gtcgagcgcg ccgtctcgat ggtgctggcg acggggagcc ggcgcgtggg
     3661 cgtcttaggc ttcagcttca aggcgggcac ggacgacctg cgcgagtcgc cgatggtctc
     3721 gctcatagag actttaatcg gcaagggtat gaaactctcc gtttacgacc gcgacgtgag
     3781 cctcgcgcga ctgttcggcg ccaacaagga gtacatcgag cgcgagatac cgcacatctc
     3841 gcagttgatg tgcgggagcg tcgaggaggt tctagaaaac tccgacgtga tagtcgtcgg
     3901 caacaagtcc gaagagttcc gcgcggtgga cgggaagctg cgcgcgggcc aggtcttgat
     3961 tgatctcgtg cgcctcttcg actcgcgcac gtccgacgag acctat
//
LOCUS       DASPKR010000522         2748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_855070, whole genome shotgun sequence.
ACCESSION   DASPKR010000522 DASPKR010000000
VERSION     DASPKR010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2748)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2748
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_855070"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..299
                     /locus_tag="VD968_14020"
     CDS             <1..299
                     /locus_tag="VD968_14020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15556.1"
                     /translation="ACPASTLKRMGLPHQNYKQPEGGPLTRKRRRVRRQILDNLATHL
                     HINSTDRLRIMRNGGGDALDAVIAALGALRSWRSTDHRHVARHPRYPREGRLYV"
     gene            357..1037
                     /locus_tag="VD968_14025"
     CDS             357..1037
                     /locus_tag="VD968_14025"
                     /inference="COORDINATES: protein motif:HMM:NF017885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HYE15557.1"
                     /translation="MVTENLPPTFKGRQYEIRALGLRDFAGLRRDDEPLDPFELAYFA
                     RLMVIDFNEIEGLSEETREHLLGVGVNDWSGGTSSRALPNGWRLIILNPRHGKARNNA
                     TLMEEVCHVFLGHKANRLSIVAQNKQGKTVARDYNEADEEAAYAVGAAALVPFAGLRR
                     LMKQGKTSIEIARHFNVSRELVEYRLKVCRLWAEYRERHPEEDAAREQRRRAFSAAGN
                     GNRQRSPG"
     gene            1052..2194
                     /locus_tag="VD968_14030"
     CDS             1052..2194
                     /locus_tag="VD968_14030"
                     /inference="COORDINATES: protein motif:HMM:NF013930.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CHC2 zinc finger domain-containing protein"
                     /protein_id="HYE15558.1"
                     /translation="MPDDPPAPEKPAAQERLRSLRDEIRRRIDYRAFFLRYCPDARQS
                     GARLHSLCPIPSHAHSGKGHPSLSVDIQQGLFNCFSRGEGGDAFTFYEKMHGVSFARA
                     VRQMARDLGITGRGRRQPSLASRAEPDAAGLEVVEPLDAERTAEVCEKFLQVCRSEDQ
                     LEGVRYLSRRGIDAATARRAGVTYFPRRAYRRVMRRMREAFPAEVLLRSGLFNRREHL
                     TFYRHRLLFPFVVEGRAIYLQARTTAPGIEPRWHNMRGPVPALYNAAALGELESGAVV
                     YLVEGFTDTLTLAANGFAAIGLVGAAGLKEEWLAPLGRFRVVAALDPDAAGRRASARY
                     GEMFARRGLRLASVELPSDVNDFFRHHPAASLELQLLTDAALEGAG"
     gene            2243..>2748
                     /locus_tag="VD968_14035"
     CDS             2243..>2748
                     /locus_tag="VD968_14035"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HYE15559.1"
                     /translation="MADQLKKRYAPAPGLTVTDKLRMLLEITRKISRSLNLEEVLAQV
                     MDTLDSLLPYDAAGIYIIRRDPHISEGGTSTLVFHAEAVRGYDIEELLELRLKLGEGL
                     IGYVAQTGEAINVPDVRADPRYVNARKATRSEMVAPIISNDEVIGVFDLESDEPDAYT
                     EDDREVLML"
BASE COUNT          462 a         1002 c          875 g          409 t
ORIGIN      
        1 aagcctgccc ggcttcaacc ttaaagcgca tgggccttcc gcaccagaac tacaagcagc
       61 ccgagggcgg cccgctcaca cggaagcgca ggcgcgtgcg gcggcagata ctcgacaacc
      121 tcgccacaca ccttcacatc aacagcactg accgcctgcg catcatgcgc aacggcgggg
      181 gcgacgcgct cgacgcggtc atcgccgcgc ttggcgcgct ccgctcatgg cgctcgaccg
      241 accaccgcca cgtcgcgcga cacccgcgct acccgcgcga ggggcgcctc tacgtctgac
      301 ccagcccgcg cgcaattctg taggagacgg cgccgcacgg cgtttataat cccggcatgg
      361 tgacggagaa tctgccgccg acttttaagg ggagacagta cgagattcgc gctctgggcc
      421 tgcgcgactt cgccggcctg cgccgcgacg acgaaccgct cgaccccttc gagctcgcct
      481 acttcgcacg cctgatggtg atagacttca acgagataga gggcctctcc gaagagacgc
      541 gcgagcacct cctgggcgtc ggcgttaacg actggtcggg cggcacgagc tcgcgggcgc
      601 tccccaacgg ctggcgcctc atcatcctca accccaggca cggcaaggcg cgcaacaacg
      661 cgacgctgat ggaggaggtc tgccacgtct tcctcggcca caaggcgaac cggctctcca
      721 tcgtcgcgca gaacaagcag ggcaagactg tggcgcgcga ctacaacgag gccgacgagg
      781 aggccgccta cgccgtcggc gccgccgcgc tcgtcccctt cgcggggctg cgccggctga
      841 tgaagcaggg caagacttcc atcgagatag cgcgccactt caacgtgagc cgcgagctcg
      901 tagagtaccg cctgaaggtc tgccgcctct gggccgagta ccgcgagcgc cacccggagg
      961 aggacgccgc gcgcgagcag cggcggaggg cctttagcgc cgcgggcaac ggcaaccggc
     1021 agcggagccc cggctgaccc cgacccgaga catgcccgac gacccacccg cccccgaaaa
     1081 gcccgcagca caagagcgcc tccgcagcct ccgcgacgag atcaggcggc gcatagacta
     1141 ccgcgccttc ttcctgcgct actgccccga cgcgcgtcag tcgggcgcgc gcctccactc
     1201 gctctgccct ataccgtcgc acgcgcacag cggcaagggc cacccgagcc tctccgttga
     1261 catacagcag ggcctcttca actgcttctc gcgcggcgag ggcggcgacg ccttcacctt
     1321 ctacgagaag atgcacggcg tctcgttcgc tagggccgtc cgccagatgg cgcgcgactt
     1381 gggcatcacg gggcgggggc gccggcagcc ttcgctcgcc tcgcgcgccg agccggacgc
     1441 ggccgggctc gaagtcgtcg agccgctcga cgccgagcgg acggccgagg tgtgcgagaa
     1501 gttcttgcag gtctgccgct cggaggatca gctcgaaggc gtgcgctacc tctcccggcg
     1561 gggcatagac gccgcgaccg cgcggcgcgc gggcgtcacc tacttcccgc gccgcgccta
     1621 ccggcgcgtg atgcgccgca tgcgcgaggc tttcccggcc gaagtgcttc tgcgcagcgg
     1681 cctcttcaac cggcgcgagc acctgacgtt ctaccgccat cgtctgctct tccccttcgt
     1741 cgtcgagggg cgggcgattt accttcaggc gcgcacgacg gcgccaggca tcgagccgcg
     1801 ctggcacaac atgcgaggcc ccgtccccgc gctctacaac gccgccgcgc tcggagagct
     1861 tgagagcggg gccgtcgtct atctcgtcga gggattcacc gacacgctta cgctcgcggc
     1921 gaacggcttc gcggccatcg gtttagtcgg cgccgccggg ctcaaggagg agtggcttgc
     1981 gccgctcggg cgcttccgcg tcgtcgccgc gctcgacccg gacgcggcag ggcgccgcgc
     2041 ctcggcgcgc tacggcgaga tgttcgcgcg ccgtggcctc cggctcgcct cggttgagct
     2101 tccctcggac gtgaacgact tcttccgcca ccacccggcc gcctcgctcg agcttcaact
     2161 gcttaccgac gcggcgctgg aaggcgctgg ttaaagacaa aagactgact accggccgcc
     2221 gttcctttat aatttctccc gtatggccga ccagttgaaa aagaggtacg cgcccgcgcc
     2281 ggggctgacg gtgacggaca agctgcggat gcttctcgag ataactcgga agataagccg
     2341 ctcgctcaac ctcgaagagg ttctggcgca ggtgatggat acgctcgact cgcttttgcc
     2401 ttacgacgcc gccggtatct acatcatccg gcgcgaccct catataagcg agggcggcac
     2461 ctccacgctc gtcttccacg cagaggccgt gcgcggctac gacatcgaag agctgctgga
     2521 gcttcgcctc aagctcggcg agggcctcat cggctacgtc gcgcagacgg gcgaggccat
     2581 caacgtgccg gacgttcgcg ccgacccgcg ctacgtgaac gcccgcaagg cgacgcgctc
     2641 cgagatggtc gcccccatca tctcgaacga cgaggtcatc ggcgtcttcg acctcgaatc
     2701 ggacgagccc gacgcctaca ccgaggacga ccgcgaggtc ttgatgct
//
LOCUS       DASPKR010000523         8505 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_722289, whole genome shotgun sequence.
ACCESSION   DASPKR010000523 DASPKR010000000
VERSION     DASPKR010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8505)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8505
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_722289"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..939)
                     /gene="dnaJ"
                     /locus_tag="VD968_14040"
     CDS             complement(<1..939)
                     /gene="dnaJ"
                     /locus_tag="VD968_14040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013983884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HYE15560.1"
                     /translation="MSKRDYYEVLGVARGASETEIKSAYRKLAVRYHPDKNPGDKAAE
                     EKFKEAAEAYSVLSDAEQRARYDRFGHAGVSGGAAAGGWGGAAGFGGIEDILGDLFGF
                     GEVFGGRSAGGRRSAAQRGADLRYDLELTLEEAAAGMTAQLRIPRLEACEACKGSGAA
                     QGTQPESCPTCSGAGQVRYQQGFFSVARTCGQCRGAGRIVRNPCKECGGTGRVEREKQ
                     MEVKIPAGVETGSRLRLAGEGEAGAQGGPTGDLYVVIHVKEHDVFERQGNNLYASVPI
                     TFAQAALGAEQAKRLHWYRAPTRIKNVSYAPDNVSIK"
     gene            complement(1022..2866)
                     /gene="dnaK"
                     /locus_tag="VD968_14045"
     CDS             complement(1022..2866)
                     /gene="dnaK"
                     /locus_tag="VD968_14045"
                     /inference="COORDINATES: protein motif:HMM:NF001413.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HYE15561.1"
                     /translation="MGKVVGIDLGTTNCCVAVLEGGAVQIVPNKEGGRTTPTVVGFTD
                     KGERLVGQIAKRQAVTNAANTVYAVKRLIGRKYAEDEVVRARETAPFEITEAANGDAR
                     IQVQGRVYSPQEISGIVLQRLKAAAEDFLGEPVTEAIVTVPAYFDDTQRQATKDAGRI
                     AGLRVERIINEPTAAALAYGLGRGENERIAVYDLGGGTFDISLLEINDGVYEVLATSG
                     NTFLGGEDFDERIIGWMVEQFREETGIDLRGDRLALQRLKEAAERAKCDLSSLTETNI
                     NLPFIAADASGPKHFSKTLTREVFENLVSDLVEKTVEPCQKALWDAKLQPKDVDKVLL
                     VGGQTRSPIIARTVREIFGKEPSAEINPDEVVAMGAAIQGGVLTGDVKDIVLLDVLPL
                     SLGLETRGGLFHKLIERNSTIPLRQGQTFTTVVDNQSSVEIHVLQGEREIAGGNRSLG
                     KFELVGIPPAPRGAPQIEVTFEVDANGILNVSAQDKSSGRKQQMKVTPTSGLSSDEIE
                     RMIVEAERSADADRRVREIIALRSKLESLARNTQRTLREFGNSLSPDERTAAQNTLSE
                     CDDLSECEDAEEIREALQRVERLASQLAMAMLNPVADARAGGGDFERF"
     gene            complement(2958..3878)
                     /gene="grpE"
                     /locus_tag="VD968_14050"
     CDS             complement(2958..3878)
                     /gene="grpE"
                     /locus_tag="VD968_14050"
                     /inference="COORDINATES: protein motif:HMM:NF010738.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HYE15562.1"
                     /translation="MSQTDMSNKERRGASRIPVRFVGDEGVRGQGGDAPEVNNDSGLT
                     PEELGRASSYEGEGEMLRRINRGGEEDSERGREVADDEDVAGTLNPSELPRSREDQDT
                     TPSHAGDDAKSEGGEGGRMSDEPRKAEAAAPVGGPEVAELVATRAELKRVEAELKKLN
                     DERQEWADKLARRQADFENFRKRTERERSETYSRALGEVVSRLLPVLDNLQRALDAER
                     TLGAGESDEFRHFLSGVELINKQLNGVLEGLGVEVIPTVGHPFDPHVHEAVSTEETAE
                     HEPDTVTQEMQRGYRLGERLLRPAMVKVAK"
     gene            complement(3952..5070)
                     /gene="hrcA"
                     /locus_tag="VD968_14055"
     CDS             complement(3952..5070)
                     /gene="hrcA"
                     /locus_tag="VD968_14055"
                     /inference="COORDINATES: protein motif:HMM:TIGR00331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HYE15563.1"
                     /translation="MAIRASTLPTQTDWIPDARGQAVLSAIIKEHLRTGEPVGSRTIS
                     ERFAGGASWSAATIRNVMAELEEHGLVEQPHTSAGRVPTDKGYRFYVDHMVGDARLSK
                     VEVATIDRALGLAGSDPAGRQPNRLMERVSHLLSELSENVGIVVSPPMADNRLEHIEF
                     LQLADGRILVVLVFQPNVVQNRVVRLDEPLTQEELEGAARYLNAEFTGKSLHAIRAEI
                     LALMSEEKALYDRLLRNAVLLFERGVGDGEAETGDVYIDGASNILAKPDFGDIERLRE
                     LFRTFEAKSRLVKILNECITREPAFGDVHVVIGREHTAPPLQACALITAPYRFGEGSV
                     AGTIGVVGPMRIEYARTMAAVNYIARLVERVLREEARN"
     gene            5673..6404
                     /locus_tag="VD968_14060"
     CDS             5673..6404
                     /locus_tag="VD968_14060"
                     /inference="COORDINATES: protein motif:HMM:NF021759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT-like domain-containing protein"
                     /protein_id="HYE15564.1"
                     /translation="MPESQPFAGTFFVEAFRQLAPKRPVPEVDARYYPYAGLNHTIRL
                     RSGRVHVRMSDIFRDAPTGVHRALAFILVAKLLRRRPPALYERIYRDYACAPEVLRAS
                     DLARRRRGRKMVSSAQGRVYDLERMFRRLNQRYFDGRIEQPTLTWSQRRTRTILGHHD
                     GAHDTIVISKTLDSADVPEWFVEYILYHEMLHIKHPARLINGRRYYHTKAFRADEQRF
                     PRYHEAQQWLDNVARLRRTLRARAA"
     gene            6756..6995
                     /locus_tag="VD968_14065"
     CDS             6756..6995
                     /locus_tag="VD968_14065"
                     /inference="COORDINATES: protein motif:HMM:NF018961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin domain-containing protein"
                     /protein_id="HYE15565.1"
                     /translation="MSENVFKGVAIVGTSDQSFSHAIEVAVTRARQTLRELSWFVVEE
                     MRGGLQRGRLEYQVTLRVFFKLEGEEGKGDDSAFV"
     gene            7153..7716
                     /gene="efp"
                     /locus_tag="VD968_14070"
     CDS             7153..7716
                     /gene="efp"
                     /locus_tag="VD968_14070"
                     /inference="COORDINATES: protein motif:HMM:NF001810.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HYE15566.1"
                     /translation="MAISATQIRRGMVIVFEGAPCKVLDARHHTPGNLRAMMQTKLRN
                     LRTGSSFEHRFRSADTVERAVLEQHEMEYLYSDGSLHHFMNTENYEQTALSDEDLGDM
                     GQWLTPGMKIQAEFYEGSPIGVTLPPSIELTVKSTEPTVKGATVSNVNKPATLENGVT
                     ISVPPFVNEGDRIRVDPTEGRYIERAK"
     gene            7798..>8505
                     /locus_tag="VD968_14075"
     CDS             7798..>8505
                     /locus_tag="VD968_14075"
                     /inference="COORDINATES: protein motif:HMM:NF016311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase N-terminal domain-containing
                     protein"
                     /protein_id="HYE15567.1"
                     /translation="MYLLYSILLGAGVLALLPRFLLGAVRHGKYAEGLKERAGSLPKL
                     EAAGRPVVWLHCVSVGETQAARPLASSLLEEFPGHLLVVSTTTLTGQRVAREAFGSRA
                     ALVFYFPFDWAWSVRRALAAVSPSAVLVMETELWPRFFRECRRRGTPVALVNGRISEK
                     SFGRYRLIRFFIRRVLADLTLAVMQTEEDAARIRELGVEPGRVRVAGNVKFDAEGAGE
                     MPLTAELRERFGLGGDRP"
BASE COUNT         1295 a         2912 c         2733 g         1565 t
ORIGIN      
        1 tttgatcgag acattgtccg gcgcgtagga gacgttcttg atccgggtcg gcgcgcggta
       61 ccagtgcagg cgcttggcct gctcggcccc gagcgcggcc tgcgcgaagg tgatggggac
      121 ggaggcgtaa aggttgttgc cctgccgctc gaacacgtcg tgctccttga cgtgtatgac
      181 gacgtagagg tcgcccgttg ggccgccctg cgcgccggcc tcgccctcgc ccgcgagccg
      241 gaggcgcgag cccgtctcga cgcccgccgg gattttcacc tccatctgct tctcgcgctc
      301 gacgcggccc gtgccgccgc actccttgca tgggttgcgc acgatgcggc ccgcccccct
      361 gcactgcccg cacgtgcgcg ccaccgagaa gaagccctgc tggtagcgaa cctggcccgc
      421 gccgctgcac gtcgggcagc tctcgggctg cgtgccttgc gcggcgcccg aacccttgca
      481 cgcctcgcac gcctcgaggc gcggtatgcg tagctgcgcc gtcatccccg cggccgcctc
      541 ttccagagtc agctcgaggt cgtaacggag gtctgcgccg cgctgtgcgg cgctgcggcg
      601 cccgccggca gagcggccgc cgaacacctc gccgaagccg aagaggtcgc cgagtatgtc
      661 ctctatgccg ccgaagccgg ccgcgcctcc ccagccgccc gcggccgcgc cgcccgacac
      721 cccggcgtgg ccgaagcggt cgtagcgggc gcgctgctct gcgtccgaga gcacggagta
      781 ggcctcggcc gcctccttga acttctcctc ggcggccttg tcgcccgggt tcttgtccgg
      841 gtggtagcgg acggcaagct tcctgtaggc gctcttgatt tccgtctcgc tggcgccacg
      901 cgcgacgccc agcacttcgt agtagtctcg tttactcatt gcctaaaaag ttaaagtgac
      961 gggtgacaag ttaaaggtga attttaactt gccgcccgcc acttgtcact cgcggctaat
     1021 tttagaacct ctcgaagtcc ccgcctcccg cgcgcgcgtc tgccacgggg ttgagcatcg
     1081 ccatcgcgag ctgcgaagcc agccgctcga ccctctgtag ggcctcccgt atctcctcgg
     1141 cgtcctcgca ctcggagaga tcgtcgcact cggagagcgt gttctgggcg gcggtgcgct
     1201 cgtcgggcga gagcgagttg ccgaactcgc gaagcgtccg ctgcgtgttg cgcgcgaggc
     1261 tttcgagctt cgagcgcagg gcgattatct ccctgacgcg gcggtcggcg tcggccgagc
     1321 gctcggcctc gactatcatg cgctcgatct cgtccgagga gagaccggaa gtcggcgtga
     1381 ccttcatctg ctgcttccgg ccgctcgact tgtcctgcgc cgacacgttc aggatgccgt
     1441 tggcgtccac ctcgaacgtg acctcgatct gcggcgcgcc gcgcggcgcg ggcgggatgc
     1501 cgaccagctc gaacttgccg aggctgcggt tgccgcccgc aatctcgcgc tcgccctgaa
     1561 ggacgtgaat ctcgacggac gactggttgt caacgaccgt cgtgaaggtc tggccctgcc
     1621 gcagcggtat ggtcgagttg cgctcgatga gcttgtggaa gagcccgccg cgcgtctcaa
     1681 gccccaaact caacgggagc acgtcgagga gcacgatgtc tttcacgtcg cccgtaagca
     1741 cgccgccctg tatggcggcg cccatcgcga ctacctcgtc cgggtttatc tcggccgagg
     1801 gctccttgcc gaatatctcg cgcacggtgc gcgcgatgat gggcgagcgc gtctgcccgc
     1861 cgacgagcag aaccttgtcc acgtccttcg gctggagctt cgcgtcccag agggccttct
     1921 ggcacggctc gacggtcttc tcgactaggt cgctcacgag gttctcgaag acctcgcgcg
     1981 tgagagtctt gctgaagtgc ttcggccccg aggcgtccgc cgcgatgaag ggcaggttga
     2041 tgttcgtctc ggtgagcgag gagaggtcgc acttggcgcg ctcggccgcc tctttgaggc
     2101 gctggagggc tagtcggtcg ccgcgcaggt caatgcccgt ctcttcgcgg aactgctcga
     2161 ccatccagcc gatgatgcgc tcgtcgaagt cctcgccgcc gaggaaggtg ttgccggaag
     2221 ttgcgagcac ctcatagacg ccgtcgttga tctccaggag cgagatgtcg aaggtgccgc
     2281 cgccgaggtc atagacggcg atgcgctcgt tctcgccgcg gccgagcccg taggccagcg
     2341 cggccgccgt cggctcgttt atgatgcgct cgacccgcag gcccgcgatg cgccccgcgt
     2401 ccttcgtggc ctgccgctgc gtgtcgtcga agtaggcggg gacggtgacg atggcctccg
     2461 tgaccggctc tccgaggaag tcttcggccg cggccttcag gcgctggagc acgatgccgg
     2521 agatttcctg cgggctatag acgcgcccct gaacctgtat gcgcgcgtcg ccgtttgcgg
     2581 cctcggttat ctcgaacggc gcggtctccc gcgcgcgcac gacctcgtcc tcggcgtact
     2641 tgcgcccgat caggcgcttg acggcataga cggtgttcgc ggcgttcgtg acggcctgcc
     2701 gcttagcgat ctggcccaca aggcgctcgc ccttgtcggt gaagccgacg acagtgggcg
     2761 tcgtgcgccc gccttccttg ttcgggacta tctgcacggc gccgccttcg agcacggcga
     2821 cgcaacagtt cgtcgttccg agatcaatgc ctacaacttt tcccatagca tttttaccgc
     2881 ggtggaggtt tgaagagagt ggggtttggc agggctgaaa ggggccgggc cgttcgcgcg
     2941 gcccccgtta ctcgttacta cttcgcgact ttgaccatgg cggggcgcag gagcctttcg
     3001 ccgaggcggt agccccgctg catctcctgc gttacggtgt cgggctcgtg ctcggccgtc
     3061 tcttccgtag aaacggcctc gtggacgtgc gggtcgaacg ggtgacccac ggtgggtatg
     3121 acttcgacgc ccaagccttc gaggacgccg ttgagctgct tgttgatgag ctcgacgccg
     3181 ctcaggaagt ggcggaactc gtcggactcg ccggcgccga gggttctctc ggcgtcgagc
     3241 gcgcgctgga ggttgtcgag cacgggcagc agccggctca cgacctcgcc gagggcgcgg
     3301 ctgtaagtct cgctgcgctc gcgctcggtg cgcttgcgga agttctcgaa gtcggcctgg
     3361 cgccgcgcga gcttgtcggc ccactcctgc cgctcgtcgt tcagcttttt aagctcggcc
     3421 tcgacgcgct tcaattccgc gcgcgtcgcg accagctcgg cgacctcggg gccgcccacc
     3481 ggcgcagcgg cctcggcctt gcgcggctcg tcagacatcc ggccgccctc gccgccctcc
     3541 gacttcgcgt cgtcgccggc gtgcgaaggc gtcgtgtcct ggtcttcgcg gctgcgcgga
     3601 agctccgacg ggttgagcgt gccggcaacg tcttcgtcgt cggcaacctc acggccccgc
     3661 tcgctgtcct cctcgccgcc gcggttgatg cggcgcagca tctcgccctc gccctcgtag
     3721 ctggaggcgc ggcccaactc ctcgggcgtg aggccgctgt cgttgttgac ctcgggcgcg
     3781 tcgccgccct gcccgcgcac gccctcgtcg ccgacgaagc gcacgggtat cctgctcgcc
     3841 ccccgcctct ccttgttaga catgtcggtc tggctcatca caagactctt gtggcctgct
     3901 cgaatgtgcg gcgcggtttc ggcagcacgc ccgcgcccgc cgttgactcc ctcagttgcg
     3961 agcctcctcg cgcagcacgc gctcgaccag gcgcgcgatg tagttgacgg cggccatcgt
     4021 gcgcgcgtac tcgatgcgca tcgggccgac gacgccgatg gtacccgcga ccgagccctc
     4081 gccgaagcgg tacggcgccg tgatgagcgc gcaggcttgc agcggcggcg cggtgtgctc
     4141 gcgcccgatg acgacgtgaa cgtcgccgaa ggccggctcg cgcgtgatgc actcgtttag
     4201 aatcttgacg aggcgtgact tggcctcgaa cgtgcggaac agctcgcgca gccgctcgat
     4261 gtcgccgaag tcgggcttgg cgagtatgtt cgatgcgccg tcaatgtaaa cgtcgccggt
     4321 ctcggcctcg ccgtcgccca cgccgcgctc gaagagcagc acggcgttgc ggagcagtcg
     4381 gtcgtagagc gccttctcct cgctcatcag cgcgagtatc tcggcgcgaa tggcgtgcag
     4441 gctcttgccc gtgaactccg cgttcaggta gcgggccgcg ccttctagct cctcctgcgt
     4501 gagcggctcg tccaggcgca cgaccctgtt ctgcacgacg ttcggctgga agacgaggac
     4561 gacgagtatg cggccgtcgg cgagctgtag gaactcaatg tgctcgaggc ggttgtcggc
     4621 catcggcggc gagacgacta tgccgacgtt ctcggagagc tccgagagga ggtgcgagac
     4681 gcgctccatc agccggttcg gctgacgccc cgccgggtcg ctgccggcga gcccgagcgc
     4741 gcggtcaatc gtcgccacct cgactttcga gaggcgcgcg tcgccgacca tgtggtcaac
     4801 gtagaacctg taacccttgt cggtcgggac gcgcccggcc gaagtgtgcg gctgctcgac
     4861 gaggccgtgc tcttcgagct cggccatcac gttgcgtatc gtagccgcgc tccagctcgc
     4921 gccccctgcg aaccgctccg agatcgtgcg cgagcctacc ggctcgcccg tccgcaggtg
     4981 ctccttgatt atggccgaca gcacggcctg cccgcgcgcg tcgggaatcc agtccgtctg
     5041 tgtcggtaat gtcgaagctc ggattgccat ttcgcccgaa aaagggtggc gtgcgggccg
     5101 gcaggggaaa atcacggcag ctttaggggc gcgccggggc ggcgcacgac tgccgtatta
     5161 atattgttta caggccccgc aaccccctgt caagcaataa ttttccgtct cagacgccgg
     5221 gctttcggga gctttctgcc cgcggccgcg agtataacgg ataggcgaaa agcggcgcaa
     5281 accttacggc cgcgggctgg ggcggcggcc gctcgacaag gccccgaccc cgaaggccgg
     5341 agtttaattc taagacccca cagaacttaa caccgctcct cagcattatt ctcacggagc
     5401 gcgggctaag tcactgtcgg caaaagagtt gccttgccgc tacagcaggc cacttgacag
     5461 aacttcgcgg ccgctctgtg ccatttgtcg gtaacgaaaa ggcttagcgg gccgtctgaa
     5521 agtcccgttt gacgcctccg ccggatgacc cgtaatatcg gctcacacgg tcgccggacg
     5581 ccttttagac tcccgaggca gcaccaccga actcacggcg gccttccggc agcaaaaagt
     5641 acggattgct cctcgcagca ggatttccgt ctatgcccga atctcagcca ttcgcaggca
     5701 cctttttcgt cgaggcgttc cgccagttgg cgcccaaacg ccccgtgcct gaagtggacg
     5761 cgcgctatta cccttacgcg ggcctgaatc acacgatccg cctgcgctcg ggccgcgtcc
     5821 acgtgaggat gtcggacatc ttcagggacg cgcccaccgg cgttcaccgg gcgctggcct
     5881 tcatactcgt cgctaaactt ttgcggcgcc gcccccccgc cctctacgaa agaatctacc
     5941 gcgactacgc ctgcgcgccc gaagtgctgc gggcctccga cctcgctcgc cgccgccgcg
     6001 ggcgcaagat ggtctcgtcg gcgcaggggc gcgtttatga tctcgaacgg atgttccgcc
     6061 gcctgaacca gcgctacttc gacggccgca tcgagcagcc gacgctcacg tggtcgcagc
     6121 gccgcacgcg cacaatcctc ggccaccacg acggcgcgca cgacacaatc gtcatcagca
     6181 agaccctcga ctcggccgac gtccccgagt ggttcgtcga gtacatcctc taccacgaga
     6241 tgctccacat caagcacccg gcccgcctca tcaacggccg ccgctactac cacacgaagg
     6301 cgttccgcgc cgacgaacag cgcttcccgc gctaccacga ggcacagcag tggctcgaca
     6361 acgtcgcgcg cctgcggcgc acgctgcggg cgcgcgcggc gtgagttttg ccttccgcgc
     6421 cgccgaaaat tttacgaaac tttccacctg cctcgtcgtt taatcgctca ggaaggtggg
     6481 ctcctccgaa agagcgggcg ggctgaagga aaaacatcac tccctccgat gttttcccag
     6541 gcccgctcgc tctttatggt tttcgggcgt ccaaactttc gtccctcctt acgcgatttt
     6601 ggagttcttg actcgactca ccccgcgtgc tagcttccgc ctgactttca acaaagcacc
     6661 gaccgccggc ccacggccgc atcccgtgca gcggattttc gcccgcgatt tcgcgctcgc
     6721 gtgctccggc tcaaaatatt tcgggaggga atcgtatgag cgagaacgtc ttcaaaggtg
     6781 tcgcgattgt cggcacttct gaccagagtt tcagccacgc tatcgaggtc gcggtcacgc
     6841 gcgccaggca gactctgcgc gagctttcgt ggttcgtcgt cgaggagatg cgcggcggct
     6901 tgcagagggg caggctcgaa tatcaggtca cgctccgcgt ctttttcaag ctcgagggcg
     6961 aggaggggaa gggagacgac tcggcgttcg tctgaggccg aagcggcgcg gcccgctgct
     7021 ggacaaaggg gcgcgcccgt agctagacta cggggtttgc gaaagccgtt cgggcgctta
     7081 ctgtggcgcc cggcgcctct tccggcaggc gatccgacga acttttattt gacacggagt
     7141 tgaaatctat ctatggcgat tagcgctaca cagatacgcc gcggcatggt catcgtattc
     7201 gagggcgcgc cctgcaaggt gctcgacgcg cgacaccaca cgcccggcaa cctgcgcgcg
     7261 atgatgcaga cgaagctgcg caacctgcgc acggggtcgt ctttcgagca ccgcttccgc
     7321 tcggccgaca cggtcgagcg cgccgtccta gagcagcacg agatggagta cctctactcg
     7381 gacggctcgc tgcatcactt catgaacacg gagaactacg agcagacagc gctcagtgac
     7441 gaagacctcg gcgacatggg ccagtggctc acgccgggga tgaagattca ggccgagttt
     7501 tacgagggct cgcccatcgg cgtcacgctc ccgccctcca tcgagctgac ggtcaagagc
     7561 accgagccga ccgtcaaggg cgcgaccgtc tcgaacgtca acaagccggc cacgctcgag
     7621 aacggcgtca ccatctccgt cccgcccttc gtcaacgagg gcgaccgcat acgcgttgac
     7681 ccgaccgagg ggcgctacat cgagcgggcg aagtaagaga gagttccgag tttcagcttc
     7741 cgagtcccaa gcagccactc ataaacttgg agcctgaaac tcggaacttg aaacttcatg
     7801 tacctcctct acagcatcct gctcggggcg ggcgtcctgg cgcttctgcc gcgcttcctg
     7861 ctgggcgctg tgcggcacgg taagtacgcg gagggcttga aggagcgcgc gggctcactc
     7921 cccaaactag aggcagccgg gcggcccgtc gtctggctcc actgcgtctc ggtcggcgag
     7981 acgcaggcgg cgcgaccgct cgcttcctcc ctgcttgaag agttccccgg ccacctcctc
     8041 gtcgtctcca cgaccacgct cacgggccag cgcgtcgcgc gcgaggcgtt cggctcgcgc
     8101 gccgcactgg tcttttactt cccctttgac tgggcttgga gcgtgcgtcg cgcgctcgcg
     8161 gccgtcagcc cctcggccgt gctagtgatg gagacggagc tttggccgcg cttcttccgc
     8221 gagtgcaggc gccgaggcac gcccgtcgcc ctcgtcaacg gccgcatctc cgagaagtct
     8281 ttcggccgct accgcctcat caggttcttc atccgccgcg tgctcgcaga cctaacgctc
     8341 gcagtgatgc agaccgaaga ggatgccgcg cgcatacgtg agcttggcgt cgagcccggc
     8401 cgcgtgcgcg tcgcagggaa cgtcaagttc gacgcggaag gtgcgggcga gatgccgctc
     8461 acggcggagt tgcgcgagag gttcgggctg ggcggcgacc gcccg
//
LOCUS       DASPKR010000524         2426 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1502571, whole genome shotgun sequence.
ACCESSION   DASPKR010000524 DASPKR010000000
VERSION     DASPKR010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2426)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2426
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1502571"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..276
                     /locus_tag="VD968_14080"
     CDS             <1..276
                     /locus_tag="VD968_14080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15568.1"
                     /translation="RDIFIIVGAAAINVVTGFRGFRPSRLGKVNTVVQIGAIVLVLVA
                     AIFPPLRGYLPTVYTTVFSFAVISGVHYVFWASKLLSEDRQAREAAQ"
     gene            566..>2426
                     /gene="dnaK"
                     /locus_tag="VD968_14085"
     CDS             566..>2426
                     /gene="dnaK"
                     /locus_tag="VD968_14085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HYE15569.1"
                     /translation="MSKIIGIDLGTTNSVVAVMEGGEPTVITNSEGGRTTPSVVAFAK
                     DGNRLVGQVAKRQAVTNPENTVYSIKRFMGRRFNEVSEEMKQVPYKVKSAGNDVRVEA
                     GGKEWSPPEISAMILQKLKQAAEDYLGQKVEKAVITVPAYFNDSQRQATKDAGRIAGL
                     EVMRIVNEPTAAALAYGLDKKKDETIAVFDFGGGTFDISILEVGEGVVEVKSTNGDTH
                     LGGDDIDEALIKWIIEEFKRDQGIDLSGDKMALQRLKEAAEKAKIELSSTMETEINLP
                     FITADASGPKHLVMKLTRARFEQLIDPILKRLMPPVEQALKDAGVDANKIDEVVLVGG
                     STRIPKVQEMVKAKFGKEPNKSVNPDEVVAVGAAVQAGVLSGEKTDILLLDVTPLSLG
                     IETLGGVNTILIPRNTTIPTRKSEIFSTASDNQTSVEVHVLQGERPMATDNRTLGKFH
                     LVGIPPAPRGMPQVEVTFDIDANGIVNVSAKDMGTGREQKITITSSSGLSKEEIDKMM
                     REAESHSAEDARKREEVEARNRLDGLVWTVEKTFNENKEKLDGATQTQIETAISDARK
                     ALEEGGVDRLNNAFSNLQSASHKLAESLYQGAGPAGGGEQASAAGASGSAGGGS"
BASE COUNT          516 a          763 c          797 g          350 t
ORIGIN      
        1 cgcgacatct tcataatcgt gggcgcggct gccataaacg tcgtcacggg cttccggggc
       61 ttccggccct cccggctcgg caaagtcaac acggtcgtgc agataggcgc aatcgtgcta
      121 gtcctcgtcg cggccatctt cccgccgctg cgtggctacc tgcccaccgt ctataccacc
      181 gtcttctcct tcgccgtaat ctccggcgtc cactacgtct tctgggcctc gaaactcctc
      241 agcgaagacc gacaggcgcg cgaggccgcg caataaaacc tctaaactgc tgaaggccaa
      301 gagcttgggt cgggcaactc tggccggggc cgctgctact aaaagttgac aacggttgac
      361 tcaaatatta tattagcgtc acgttcaagt tgcccacccg ccccgcgcgt cagaaaaatg
      421 cgcggggtcg gcccgagcaa gtggacgaaa ggcaacgaac cgcggcgctt ttaggccccg
      481 gccggaaatg gtggctcccc cgcgagggat gccgccgccg gggctaggag aggcggccga
      541 ataaactggg agagatggaa aagcgatgag caagattata ggcatagact tagggacgac
      601 gaactcggtg gtcgccgtga tggaaggcgg cgagccgacg gtcataacca actcggaagg
      661 cggccgcacg acgccctccg tcgttgcctt cgcaaaggac ggcaaccgcc tcgtcgggca
      721 ggtcgccaag cgccaggccg tcacgaaccc cgagaacacg gtctattcga tcaagcgctt
      781 catgggccgg cgcttcaacg aagtgtccga ggagatgaag caggtgccat acaaggtgaa
      841 gtcggccggc aacgacgtgc gcgtcgaggc gggcggcaag gagtggtcgc cgccggagat
      901 ttccgcgatg atcctccaga agctgaagca ggcggcggaa gactacctcg gccagaaggt
      961 cgagaaggcg gtcataacgg tgccggccta cttcaacgac tcgcagcgcc aggcgacgaa
     1021 ggacgccggc aggatcgccg gcctcgaagt gatgcgcatc gtcaacgagc cgaccgcggc
     1081 cgcactggcc tacgggctcg acaagaagaa ggacgagacc atcgccgtct tcgacttcgg
     1141 cggcggcacc ttcgacatct cgattctgga agtcggcgag ggcgtcgtcg aggtcaagtc
     1201 cacgaacggc gacacgcacc tcggcggcga cgacatagac gaggcgctca tcaagtggat
     1261 catcgaggag ttcaagcgcg accagggcat tgacctctcg ggcgacaaga tggccttgca
     1321 gcgcctgaag gaggcggccg agaaggcgaa gatcgagctc tcctcgacga tggagacgga
     1381 gatcaacctg cccttcatca cggccgacgc ctccgggccg aagcacctcg tgatgaagct
     1441 cacgcgcgcc cgcttcgagc agctaattga cccgatcctc aagcgcctga tgccgcccgt
     1501 cgagcaggcg ctcaaggacg cgggcgtgga cgccaacaag attgacgagg tcgtgctcgt
     1561 cggcggctcc acgcgcatcc cgaaggtgca ggagatggtc aaggccaagt tcggcaagga
     1621 gccgaacaag agcgtgaacc cggacgaggt cgtcgccgtc ggcgcggccg tgcaggccgg
     1681 cgtgctctcg ggcgagaaga cggacatcct cctgctcgac gttacgcctt tgagcttagg
     1741 cattgagact ctgggcggcg tgaacacgat tctcataccg cgcaacacga ccatcccgac
     1801 gcgcaagagc gaaatcttct cgacggcctc ggacaaccag acgagcgtgg aggttcacgt
     1861 cctacagggc gagcgcccga tggcgaccga caaccggacg ctcggcaagt tccacctcgt
     1921 cggcatcccg ccggcgccgc gcggcatgcc gcaggtggag gtcaccttcg acatagacgc
     1981 caacggcatc gtcaacgtct cggcgaagga catggggacg ggccgcgagc agaagataac
     2041 gatcacctcg tcttcgggcc tgtcgaagga ggagattgac aagatgatgc gcgaggccga
     2101 gtcgcactcg gccgaggacg cgcgcaagcg cgaggaggtc gaggcgcgca accgccttga
     2161 cggcctcgtg tggactgtcg agaagacctt caacgagaac aaggagaagc tcgacggcgc
     2221 gacgcagacg cagatagaga cggccatctc agacgccagg aaggcgctcg aagagggcgg
     2281 cgttgaccga ctcaacaacg ccttctcgaa cctccagagc gcgtcgcaca agctggccga
     2341 gtcgctctac cagggcgcgg gcccggcggg cggcggcgag caggcttcgg ccgcgggcgc
     2401 ttccggctcg gccggcggcg gctcca
//
LOCUS       DASPKR010000525         9833 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_78312, whole genome shotgun sequence.
ACCESSION   DASPKR010000525 DASPKR010000000
VERSION     DASPKR010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9833)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9833
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78312"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..863)
                     /locus_tag="VD968_14090"
     CDS             complement(<1..863)
                     /locus_tag="VD968_14090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HYE15570.1"
                     /translation="MPNTPSASYSLTLRVKLSSKAGTLGQLTTAIGQAGGDIGAIDIV
                     SVGRDSIIRDLTVNAGSAEHGKAIVEAARSVDGVEVINVSDRVFLMHIGGKIEVVSKA
                     PLKTRADLSMAYTPGVARVCEAIHRDPEKAFTLTIKRNTVAVVTDGTAVLGLGDIGPA
                     AAMPVMEGKAMLFKEFAGVDAFPICLATKDPEEIVRTVKNIAPAFGGINLEDIAAPRC
                     FEIEERLKEELDIPVFHDDQHGTAVVVLAALINAVKLTGKRMEDLKVVVNGVGAAGVA
                     CTKIILSAGVR"
     gene            complement(985..2046)
                     /locus_tag="VD968_14095"
     CDS             complement(985..2046)
                     /locus_tag="VD968_14095"
                     /inference="COORDINATES: protein motif:HMM:NF022187.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rossmann-like and DUF2520 domain-containing
                     protein"
                     /protein_id="HYE15571.1"
                     /translation="MARRAARAARADRGRLEARNGLKTKSESRKKSEAKRAGGSAPRA
                     PIPLEPPRAEQRRSRASVSVVGAGRLGTALARALVARGYDVRALVARRAASARRAVEV
                     SGARSASALSLARLDELAPTDLLFITTQDGAVSEVAGRLAALPWARPRNRVALHVSGA
                     LSSEALATLRERGFAVGSMHPLAAVSHPEAGAESLSRAFYCVEGDARAVRAARRVVRD
                     LGGRSFTVPTEAKALYHAAAVMSAGHAVALFDLAAGLLELCGLTRRHAREVLLPLAQS
                     ALDNLARQPPERALTGTFARGDASTVRKHLAALRRAGDDEALAAYALLGSVSLRLARR
                     AGAGDERLEEITRLLSTAG"
     gene            complement(1980..4703)
                     /locus_tag="VD968_14100"
     CDS             complement(1980..4703)
                     /locus_tag="VD968_14100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15572.1"
                     /translation="MKRIQDKIKDLVEPQVFEQIGNFSDDPARALAAYRFTDVTSDLL
                     SRWLDVLAGLKRGSGAALALAGARGVGKSHTLAVFGALAGSERLRSTVEDAHVSASAL
                     RLSGRRHAVVRVGRGTRPTLAEELAAGFASVFGGSEGQWVGNPAEILSVAASRAGEET
                     LVVIIDTAFNRPARVARDDGPWLGDLAVTARGLNAFLAVALDDDIAGADGVNVALSGA
                     YQIDYLDPENLFRVAEQFVLRKKPQGRAAIRDIYQSLRASVRNFNWSESRFASLYPVH
                     PLVAEVAAGVRMFAPTFAFLPFAAGAAVRASGRPAQSLVLLDEVFDAAEAELRRSQDL
                     REAFSAYDYLTGRCINELPVMRRYQARLILKSLFVLSLDSRGATPGELCSALLMSESA
                     AGSGDAPGQIEETLASFADAATAGSIYRSVVAGGEKRYGFRIPVLDAYEAAREGTAAE
                     PEPKAEEAGELVVGAQKAEATAQPPTESAAADSPAAVKDEGGAVEEPVAAHEAEGEQG
                     GEELTAWARLLTDNASLAPLSAPGGREGVVAALSAWLEAWRARDVPAKFDALPDEALT
                     TRIWKAAEAVRRSFGRAAEAVESAVTGQLSLEDCLGRVADAFRNSAETFTERARLLED
                     LTELAEGFALREAVRAYLATAEPTGVGEIETARRELLSIADGANNFLDAAQRARFDRL
                     WQEFRARYVEHYAAEHDKTVGAGAGEGLRELLRGERWREFESLSRLPVVSTKVWRQAE
                     ELARDAAATRCDLPVRQLLESRPSCACRFRLGAARELERLPAELEAMAGRGLEVYRRT
                     LLMLGGHLAIALDALARKGSEGDDGLRARSLSTSFAQGRLPERLARADVRLIERALGR
                     MAAPPPVRVTAPNGDAGLLTREELRARFEQWLDELPEQPVLIEVVSKRETV"
     gene            5061..6275
                     /locus_tag="VD968_14105"
     CDS             5061..6275
                     /locus_tag="VD968_14105"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HYE15573.1"
                     /translation="MQTKFARTLTALSLVLSLWVGSLTAVAAPRAQKAGEKQEQTAST
                     KNKKDKKSDDRAAKSAADHEAEKRAGKPLSEKEDPRMIGKRKLNSGFIASISRGVETE
                     VKIGRELAAQIDREAKFIDDPVITEYINRVGQNVVLHSDAKIPFTIKVIDSDEVNAFA
                     LPGGFFYVNKGLILAADSEAEVAGVMAHEIAHVTARHAMENQAKGMLAEIGLLGGSIF
                     LGGLGGLLINQAAQFGALLGFMKFSRDAESEADVLGVQYLWAAGYDPGAMSTMFEKLN
                     TKNKKKPGTISKLFTTHPQSADRMEASRALVARFPEREEYVLSTSEFQRVKARLLRLS
                     NARASSAGDIAPGEDGAPGRPTLKRRQPTSEDGSNPGSSAPPNEKKDDKPQLKKRTDE
                     QKPAQSQGDNQP"
     gene            6435..6896
                     /gene="rplM"
                     /locus_tag="VD968_14110"
     CDS             6435..6896
                     /gene="rplM"
                     /locus_tag="VD968_14110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019394039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HYE15574.1"
                     /translation="MSTYFPSGEGLAENRKWYVVDAAGQTVGRLATEVARVLTGKNKP
                     QWTPFLDTGDCVIVVNARKAVFKGSKAEQKMYHHHTLYPGGLRSISVKDQFEKHPERV
                     IELAVKGMLPKTKLGRAMAKKLKVYAGADHPHAAQRPEPLALSARAAAASK"
     gene            6922..7314
                     /gene="rpsI"
                     /locus_tag="VD968_14115"
     CDS             6922..7314
                     /gene="rpsI"
                     /locus_tag="VD968_14115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002942223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HYE15575.1"
                     /translation="MADIQYYGTGRRKTSTARVYLRPGAGDIRVNRKTFEEYFPNQAL
                     RMIIRQPLTLTDTANKFDIIVNVAGGGPAGQAGAVRHGITRALMEFNADLRPALKGAG
                     LVTRDPRHKERKKYGQKGARKRFQFSKR"
     gene            7465..8517
                     /gene="rpsB"
                     /locus_tag="VD968_14120"
     CDS             7465..8517
                     /gene="rpsB"
                     /locus_tag="VD968_14120"
                     /inference="COORDINATES: protein motif:HMM:TIGR01011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HYE15576.1"
                     /translation="MPVTVTMKELLEAGVHFGHQVRRWNPKMKEYIFGERNGINIIDL
                     QKTQKMFRDAIAFVTGLMGEDRGRAILFVGTKRQAQDAIREEAERAGQFYINQRWLGG
                     LLTNFQTVQKSIKRLRDLEAMQTDGRYEKLTKKERIKLDREREILEKNLSGIKNMNRL
                     PDALFVIDVRKEDIAVKEANRLGIPVIAVVDTNCSPEGIDYVIPGNDDALRAVRLFAS
                     RIADAVVEGQQMRGKGEEDEEAAAGPAEAQEAPAPTSRVVTSSVTTERDPGAQSATMT
                     GEDVSKLSAEMGVSVPGNIGFGRTGQQPDSVGDHEQVGTGAPVRGATGTTDASGKTPQ
                     SSPEQEKGAETVGAAK"
     gene            8628..9299
                     /gene="tsf"
                     /locus_tag="VD968_14125"
     CDS             8628..9299
                     /gene="tsf"
                     /locus_tag="VD968_14125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011555308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HYE15577.1"
                     /translation="MAEITSGAVKSLREKTGAGMMECKKALTEAGGDEEKAVEILRKR
                     GMATAGKKAGRVAAEGVVGSYIHMGGKVGVLVEVNCETDFVARTDEFQALVKDIAMHI
                     AAAEPRFVSRDEVPADTLDKEREIARAQAKNDPKNASKPDQVIDKIVEGRLNKFYEEA
                     VLLDQPFVKDPAKTVNELLTEKIAATGERITVRRFARYKMGEGLQKRADDFGGEVAAL
                     AGGNQ"
     gene            9303..>9833
                     /locus_tag="VD968_14130"
     CDS             9303..>9833
                     /locus_tag="VD968_14130"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA];
                     GO_process: GO:0044210 - 'de novo' CTP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uridine monophosphate kinase"
                     /protein_id="HYE15578.1"
                     /translation="MTKTPESKAAAARPVFRRVLLKASGEALMGAQKYGVDVGVARAV
                     AEEIKAVHALGVEVAIVVGGGNIFRGVSESAGDMDRAAADYIGMLATVMNAVVLQDAL
                     EKTGVHTRVLSAINIPQVAEPFIRRRAVRHLEKKRVVIFAGGTGNPYFTTDSAAALRA
                     AELKAEVILKATKVDGV"
BASE COUNT         1681 a         3350 c         3383 g         1419 t
ORIGIN      
        1 ttgcgcacgc ccgcgctcaa gataatcttc gtacaggcga cgccggccgc gcccaccccg
       61 ttgacgacca ccttcaaatc ttccatccgc ttgcccgtca gcttgacggc gttaatcagt
      121 gcggcgagga cgacgacggc cgtgccgtgc tggtcgtcgt ggaagacggg gatgtcgagt
      181 tcttccttga ggcgctcctc tatctcgaag cagcgcggcg cggcgatgtc ttcgaggttg
      241 atgccgccga aggcgggcgc gatgttcttc accgtccgca cgatctcttc cgggtccttc
      301 gtcgccaggc agatcgggaa ggcgtccacg cccgcgaact ctttgaagag catcgccttg
      361 ccttccatga cgggcatggc ggcggccggg ccgatgtcgc cgaggccgag cacggccgtg
      421 ccgtcggtga cgacggccac ggtgttgcgc ttgatggtga gcgtgaaagc cttctcgggg
      481 tcgcggtgta tggcctcgca gacgcgggcg actccgggcg tgtaggccat cgagaggtct
      541 gcgcgggtct tcaaaggcgc tttggagact acctctatct tcccgccgat gtgcatgagg
      601 aagacgcggt cggagacgtt tatgacctcg acgccgtcaa cgctgcgcgc ggcctcgacg
      661 atggccttgc cgtgctcggc agagccggcg ttgaccgtga ggtcgcggat gatcgagtcg
      721 cgcccgacgc tgacgatgtc aatggcgccg atgtcgcccc cggcctggcc tatggctgtg
      781 gtcaattggc cgagcgtccc ggctttgctc gaaagcttca cgcgcaaggt caggctgtag
      841 ctcgcgctgg gcgtgttcgg catcgaggtc acggcccgtg ttccctcctc cggctctccc
      901 gcggtctaac ttgaaaaggg gttttgctcc gattgggcgc tagagtagcg ccgaacgggc
      961 gggggcgcaa gcacgtcggc ccgctcagcc ggccgtcgag aggaggcgcg ttatctcttc
     1021 gagccgctcg tcgccggcgc ccgcgcgccg ggcgaggcgc agcgagacgg agccgagcag
     1081 cgcgtaggcg gcgagcgctt cgtcgtcgcc agcgcggcgg agggctgcga ggtgcttgcg
     1141 gactgtcgag gcgtcgccgc gcgcgaaagt ccctgtgagg gcgcgctcgg gcggctggcg
     1201 cgcgaggttg tcgagggcgc tttgcgcaag aggcaggagg acttcgcgcg cgtgacggcg
     1261 cgtgagcccg cagagttcga gcagcccggc ggccaggtcg aagagcgcga cggcgtggcc
     1321 cgcggacatg acggccgcgg cgtggtagag cgccttcgcc tcggtcggca ctgtgaagct
     1381 tcggccgccg aggtcgcgca cgacgcggcg cgcggcgcgg acggcgcggg cgtccccctc
     1441 gacgcagtag aaggcccggc tcaggctctc tgcgccggcc tcggggtggc tcacggccgc
     1501 gagcgggtgc atcgagccca cggcgaagcc gcgctcgcgg agggtcgcga gcgcctcgga
     1561 cgagagcgcg ccgctcacgt gcagcgccac acgattgcgc ggcctggccc agggcagcgc
     1621 ggcgagccgg cccgcgactt ctgagacggc accgtcctgc gtcgttatga agagaaggtc
     1681 tgtcggcgcc agctcgtcca aacgtgcgag ggagagcgcc gaggcggagc gcgcgcccga
     1741 gacttcgacg gccctacgcg cgctcgccgc ccgccgcgcg acgagggcgc gcacgtcgta
     1801 gccgcgcgcg acgagcgcgc gagcgagcgc agtaccgagc cgccctgcgc ccacgacaga
     1861 cacgctggcc cgactccgcc gctgctcggc gcggggaggc tcaagaggga tgggcgcgcg
     1921 cggcgcactc ccccctgccc ttttagcctc agactttttc cggctctcgc tcttcgtctt
     1981 caaaccgttt cgcgcttcga gacgacctcg atcagcacgg gctgctcggg cagctcgtcg
     2041 agccactgct cgaagcgagc tcgcagctcc tcgcgcgtga gcagccccgc gtcgccgttc
     2101 ggcgccgtga ctcgcacggg cggcggagcc gccatccgcc ccagcgctcg ctctatcagc
     2161 cgcacgtcgg cgcgcgcgag ccgctcgggc agccggccct gcgcgaacga ggtcgagagc
     2221 gagcgtgcgc gcaggccgtc gtcgccctcc gagcctttgc gcgccagcgc gtcgagcgcg
     2281 attgcgaggt ggccgcccag catcagaagc gtccgcctat agacttcgag cccgcgcccg
     2341 gccatcgcct ctaactcggc ggggagccgt tcgagctcgc gcgccgcgcc caggcggaag
     2401 cggcacgcgc acgagggccg gctctccaga agctgccgca cgggcaggtc gcagcgggtg
     2461 gcggccgcgt cgcgcgcaag ctcctcggcc tgccgccaga ccttcgtgct gacgacgggc
     2521 aggcgggaga gcgactcgaa ctcgcgccag cgctcgccgc gcagaagctc ccggagcccc
     2581 tcgcccgccc cggcgcccac agttttatca tgctcggcgg cgtaatgctc cacgtaacgc
     2641 gcgcggaact cctgccagag ccggtcgaag cgcgcgcgct gcgcggcgtc gaggaagttg
     2701 ttcgcgccgt cggcgatgga cagaagctcg cggcgagcgg tctcaatctc gcccacgccc
     2761 gtaggctcgg cagtcgcgag gtacgcgcgc acggcctcgc ggagagcgaa gccttcggcg
     2821 agctcggtca ggtcttcgag caggcgggcg cgctcggtga aggtctccgc cgagttgcgg
     2881 aaggcgtcgg cgacgcggcc gaggcagtct tcgagggaga gctgtccggt gactgccgac
     2941 tcgacggcct cggcggcgcg gccgaagctg cgccgcacgg cctcggccgc cttccagatt
     3001 ctcgtggtca atgcttcgtc gggcagcgcg tcgaatttag ccggcacgtc tcgcgcgcgc
     3061 cacgcttcga gccacgcgga gagcgcggcc acaacgcctt cgcgcccgcc cggcgcggac
     3121 aggggggcga gcgacgcatt gtccgtcagc agccgcgccc acgcggtcag ctcctcgcca
     3181 ccctgctcgc cttcggcttc gtgcgccgcg actggctctt caacagcgcc gccttcatct
     3241 ttgaccgcgg ctggtgaatc agccgcggcg ctctccgtcg gcggctgcgc cgtcgcttcc
     3301 gccttttgcg ctccgacgac gagctcgccc gcctcttcgg ctttcggctc aggctcggcc
     3361 gccgtcccct cccgcgctgc ctcgtaggcg tcgagcacgg gtatgcggaa gccgtatcgc
     3421 ttctcgccgc cggccacgac gctgcggtag atgctgcccg cggtcgccgc gtcggcgaag
     3481 ctcgcgagcg tctcctctat ctgccccggc gcgtcgcccg agccggccgc cgactcagac
     3541 atcaggagcg ccgagcagag ctcgcccggc gtcgcgccgc ggctgtcgag cgagagaacg
     3601 aacaaactct tcagaatcag ccgcgcctgg tagcgccgca tgacgggcag ctcgtttatg
     3661 cagcgcccgg tcaggtagtc gtaagccgag aaggcttcgc gcaggtcttg cgagcggcgg
     3721 agctcggcct cggccgcgtc gaagacttcg tccaggagca cgagcgattg cgcgggccgc
     3781 cccgaggctc gcacggccgc gcccgccgcg aacggcagga aggcgaaggt cggcgcgaac
     3841 atgcggacgc cggccgcgac ctcggcgacg agcgggtgga cggggtagag agaggcgaag
     3901 cgcgactcgc tccagttgaa gttgcgcacg ctcgcgcgca gggactggta tatgtcgcgt
     3961 atcgccgcgc gcccctgcgg cttcttgcgc aggacgaact gctcggcgac gcggaagagg
     4021 ttctcggggt cgaggtagtc tatctggtac gcgccggaga gggcgacgtt gacgccgtcg
     4081 gcgccggcta tgtcgtcgtc gagcgcgacg gcgaggaagg cgttcagccc ccgcgccgtc
     4141 acggccaggt cgccgagcca ggggccgtcg tcgcgcgcga cgcgcgccgg gcggttgaag
     4201 gccgtgtcaa tgattacgac gagcgtctcc tcgcctgccc gcgaggcggc tacggagaga
     4261 atctcggccg ggtttccgac ccactgccct tcgctcccgc cgaagaccga ggcgaagccg
     4321 gcggccaatt cctcggcgag tgtcgggcgc gttccccgcc ccacgcgcac gacggcgtgc
     4381 cggcgcccgg aaagcctcag cgcgctggcg gatacgtgcg cgtcctcgac ggtcgagcgc
     4441 agccgctccg agcccgccag cgccccgaag acggcgagcg tgtggctctt gcccacgccg
     4501 cgcgcgccgg ccagggcgag cgccgccccg ctgcctcgct tcaggccggc caaaacgtcc
     4561 agccagcgcg agagcaggtc agaggttacg tccgtgaaac ggtaggcggc tagcgccctc
     4621 gcggggtcgt ccgaaaaatt cccgatctgc tcgaaaacct gcggctcgac taagtccttt
     4681 atcttgtcct gtatgcgttt cattcgcccc cgggcgggaa gaacagcggc tctccgagga
     4741 tgagggagga gggcattttg aatctagcac gccgcccgag gccggcgcaa cgcagaagtt
     4801 tttacgacgc cgcgcgggct tcgctgctat aatccgggag gcttcccgga acaggcagga
     4861 cgacgacggc cggggccggg cgcgagggcc gcgcgacggc cgaggcggcg caacctattg
     4921 ccgccaaagg cgcatccaaa ggttcacgcc ttgccgcgta aattttttga cggtcaaacg
     4981 tcccgcctga ctttcggctg ttagcccgct tccctgttcg gccgcaggcg ttgacaaagt
     5041 tttcggaggg tttttcgacg atgcaaacca aattcgcccg cacgctcacg gcgctctcgc
     5101 tcgtcctcag cctctgggtc ggctcgctga cggccgtcgc cgcgccgcgc gcgcagaagg
     5161 ccggcgagaa gcaggagcag accgcctcca cgaagaacaa gaaggataag aagtcggacg
     5221 acagggcggc caagtcggcc gccgaccacg aggccgagaa gagggcgggc aagccgctct
     5281 ccgagaagga agacccgcgc atgatcggga agcgcaagct caacagcggc ttcatcgcca
     5341 gtatcagccg cggcgtcgag accgaggtca agatcgggcg cgagcttgcg gcgcagattg
     5401 accgcgaggc caagttcatt gacgaccccg tcatcaccga gtacatcaac cgcgtcggcc
     5461 agaacgtcgt gctccactcc gacgccaaaa tccccttcac catcaaggtc attgactccg
     5521 acgaggtcaa cgccttcgcc ttgcccggcg gcttcttcta cgtcaacaag gggctgattc
     5581 tcgccgccga cagcgaggcc gaggtcgcgg gcgtcatggc gcacgagata gcgcacgtta
     5641 cggcccgcca cgcgatggag aaccaggcga agggcatgct tgccgaaatc ggcctgctcg
     5701 gcggctccat attcctgggc ggcctgggcg gcctgctgat taaccaggcg gcgcagttcg
     5761 gcgcgctcct cggcttcatg aagttcagcc gcgacgccga gagcgaggcc gacgtgctgg
     5821 gcgtccagta cctctgggca gccggctacg accccggcgc catgtccacg atgttcgaga
     5881 agctcaacac gaagaacaag aagaagcccg gcaccatctc gaagctcttc actacgcacc
     5941 cgcagtcggc cgaccgcatg gaggcgtcgc gcgcgctcgt cgcccgcttc cccgagcgcg
     6001 aggagtacgt gctctcgacc tcggagttcc agcgcgttaa ggcccgcctg ctccggctct
     6061 cgaacgcccg cgcctcgtcg gccggcgaca tagcgccggg cgaggacggt gcgccgggcc
     6121 gcccgacgct caagcgccgg cagcccacgt cggaggacgg ctcgaacccg ggttcttcgg
     6181 cgcccccgaa cgagaagaag gacgacaagc cgcagctcaa gaagcgcacc gacgagcaga
     6241 agcccgcgca atcgcagggc gacaaccagc cgtaaccagg gtttggcggg cgaaaacttc
     6301 gaggcccccg gtctgaaaag gtcgggggcc tttaggcgtt tgcgggggcc gcggcgcgcg
     6361 gcttgacaac aaaagtgccg tttcgtattc tacccgttcg cgttttagac gcttaaaatt
     6421 gagagagtta tcctatgtca acctatttcc ccagcggcga agggctcgct gaaaatcgca
     6481 agtggtacgt cgttgacgcg gcgggccaga cggtcggccg cctcgccacc gaggtcgcgc
     6541 gcgtgctgac cggcaagaac aagccgcagt ggacgccctt cctcgacacg ggcgactgcg
     6601 tcatcgtcgt caacgcccgc aaggccgtct tcaagggctc gaaggccgag cagaagatgt
     6661 accaccacca cacgctctac cccggcggcc tgcgctccat ctcggtcaag gatcagttcg
     6721 agaagcaccc ggagcgcgtc atcgagctgg ccgtcaaggg gatgctcccc aagacgaagc
     6781 tcggccgggc gatggctaag aagctcaagg tctatgccgg cgctgatcac ccgcacgcgg
     6841 cgcagcgccc cgagccgctc gccttaagcg cgcgggccgc cgcggcgtcg aagtagaacg
     6901 aaaatctaag gaagaggaat cgtggcagac attcagtact acgggacggg aaggcgcaag
     6961 acctcgacgg cgcgcgtcta tctgaggccg ggcgcgggcg acatacgcgt caaccgcaag
     7021 acgttcgagg aatacttccc caaccaggcc ctccggatga taatccgcca gccgctgacg
     7081 ctcaccgaca cggccaacaa gttcgacatc atagtcaacg ttgccggcgg aggccccgcg
     7141 ggccaggccg gcgccgtgcg ccacggcatc acgcgcgctc tgatggagtt caacgccgac
     7201 ctccggccgg ccttgaaggg cgcagggctc gtcacgcgcg acccgcgcca caaggagcgc
     7261 aagaagtacg gccagaaggg cgcgcgcaag cgcttccagt tctcgaaacg ctaacggagt
     7321 gcggcgggcg ctcgcggggc ttcggccctc aagcgcccgc cgcactttaa tccattgccg
     7381 cgcgccgatt ggttgccccc tcgcaggggc ctttggggcg cggcgagcac acgaaaccaa
     7441 tcacgcgctg aggaggatta gagtttgcca gtcaccgtca cgatgaagga gttgctagaa
     7501 gccggcgttc acttcggcca ccaggtcagg cgctggaacc cgaagatgaa ggagtacatc
     7561 ttcggcgagc gcaacggcat taacatcatt gacctgcaga agacgcagaa gatgttccgc
     7621 gacgccatcg cgttcgtcac cggcctgatg ggcgaagacc gcggccgcgc catcctcttc
     7681 gtcggcacga agcggcaggc gcaggacgcc atacgcgagg aggcggagcg cgccggccag
     7741 ttctacatca accagcgctg gctgggcggc ctcctcacaa acttccagac cgtgcagaag
     7801 tcgatcaagc ggctgcgcga cctcgaagcg atgcagacgg acggccgcta cgagaagctg
     7861 acgaagaagg agcgtatcaa gctcgaccgc gaacgcgaga ttttggagaa gaacctctcc
     7921 ggcatcaaga acatgaaccg cctgccggac gcgctcttcg tcatagacgt gcgcaaggag
     7981 gacatcgccg tcaaggaggc caaccgcctc ggcatccccg tcatcgccgt cgttgacacc
     8041 aactgctcgc ccgaaggcat tgactacgtc atccccggca acgacgacgc cctgcgcgcc
     8101 gtccgcctct tcgcctcgcg catagccgac gccgtcgtcg agggccagca gatgcgcggc
     8161 aagggcgagg aggacgagga ggccgccgca ggcccggccg aagcgcagga agcgcccgcg
     8221 cccacttcgc gcgtcgtcac ctcgtcggtc acgaccgagc gcgaccccgg cgcgcagtcc
     8281 gcgaccatga cgggcgagga cgtctccaag ctctcggccg agatgggcgt ctccgtcccc
     8341 ggcaacatag gcttcggccg gacgggccag cagcccgaca gcgttggcga ccacgagcag
     8401 gtcggcacgg gcgcgcccgt ccgcggcgcc accggcacga cggacgcctc gggcaagacg
     8461 ccgcagtcct cgcccgagca ggagaagggc gccgagacgg tcggcgccgc caagtgagcc
     8521 ggcgaggctt tcaagacttt caatcagcgg cgagcgcagc ctctcagtgc ggggaacccg
     8581 ccgggctgcg catcttttta agtaaactac cttttcagga gaaggacatg gcggagataa
     8641 catcgggggc ggtgaagtcg ctcagggaga agacgggcgc ggggatgatg gagtgcaaga
     8701 aggcgctcac tgaggcgggc ggcgacgagg agaaggccgt cgaaatcctg cgcaagcgcg
     8761 gcatggcgac ggccggcaag aaggcgggcc gcgtcgcggc cgagggcgtc gtcggctcct
     8821 acatacacat gggcgggaag gtcggcgtgc tcgtcgaggt caactgcgag accgacttcg
     8881 tcgcgcgaac ggacgagttc caggccctcg tcaaggacat cgcgatgcac atagcggcgg
     8941 ccgagccccg cttcgtctcg cgcgacgagg tgccggccga cacgcttgat aaggagcgcg
     9001 agatagcccg cgcgcaggcc aagaacgacc ctaagaacgc cagcaagccc gatcaggtca
     9061 ttgacaagat agtcgagggg cgcttgaaca agttttacga ggaggccgtc ctgctcgacc
     9121 agcccttcgt caaagacccg gcgaagaccg tcaacgagct cctcaccgag aagatagccg
     9181 cgacgggcga gcgcatcacg gtgcgccgct tcgcgcgcta caagatgggc gagggccttc
     9241 agaagcgcgc cgacgacttc ggcggcgagg tcgcggcgct cgcgggcggc aatcagtagg
     9301 cgatgacgaa gactcccgaa tcaaaggcgg cggccgcgcg ccccgtgttc cgtcgcgtgc
     9361 tgctgaaggc gtcgggcgag gcgctgatgg gcgcgcagaa gtacggcgtg gacgtgggcg
     9421 tggcgcgagc cgtggccgag gagataaagg ccgtccacgc gctcggcgtc gaggtcgcaa
     9481 tcgtcgtcgg cggcggcaac atcttccgcg gcgtctcgga gagcgcgggc gacatggaca
     9541 gggccgccgc cgactacatc ggcatgctcg ccaccgtgat gaacgccgtc gtcctccagg
     9601 atgctttgga gaagacgggc gtccacacgc gcgtcctctc ggccataaac atcccgcagg
     9661 tggccgagcc ctttatacgc cgccgcgccg ttcgccacct cgagaagaag cgcgtagtca
     9721 tcttcgccgg aggcaccggc aacccgtact tcacgaccga ctcggccgcg gccctgcgcg
     9781 ccgccgagct gaaggccgag gtcattctga aggcgacgaa ggtggacggc gta
//
LOCUS       DASPKR010000526         3932 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_335950, whole genome shotgun sequence.
ACCESSION   DASPKR010000526 DASPKR010000000
VERSION     DASPKR010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3932)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335950"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..821
                     /locus_tag="VD968_14135"
     CDS             <1..821
                     /locus_tag="VD968_14135"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYE15579.1"
                     /translation="GSAAHAATGLAEVNGARLWYEEAGRGPAVVLLHGGLVDARLWDD
                     QMLPLSRRYRAVRYDLRGYGKSSAPTESFSHVEDLRALLDFLKIDRATLVGLSLGGIV
                     AADFALEHPERVERLVLVGPGLRGDMQPPDKAMEEVWKAIQDRDDGKVVAAYMGSPLY
                     AAVRAGTTARARLERMLTDNLDGLETLRPGFIKYPEPATAERLGDVRAPTLVVIGDRD
                     GRNLLNIADTLAAKIPGARKAVIRGASHHPPVETPKEFNRILLGFLREPLPAGK"
     gene            844..1395
                     /locus_tag="VD968_14140"
     CDS             844..1395
                     /locus_tag="VD968_14140"
                     /inference="COORDINATES: protein motif:HMM:NF016214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HYE15580.1"
                     /translation="MASIFTHAFVAVAAGRVYAAGEAPARFWLLSAACAVAPDADVAA
                     FAFGVPYGSTFGHRGFTHSLAFALLLGFAVVALFFRGAGFKTRWSLIAYFSAVTASHA
                     VLDALTNGGLGVAFFSPFSNERYFFPFRPVVVSPIGVASFFSDWGVAVIKSELVWVCG
                     PAALAAIAVLLFRQRAARRDEKA"
     gene            1392..1523
                     /locus_tag="VD968_14145"
     CDS             1392..1523
                     /locus_tag="VD968_14145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15581.1"
                     /translation="MRLIFIFSPVGGRESLRIDNTRLAPAEAARRIAEHYGLAGGGR"
     gene            1545..2387
                     /locus_tag="VD968_14150"
     CDS             1545..2387
                     /locus_tag="VD968_14150"
                     /inference="COORDINATES: protein motif:HMM:NF013166.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYE15582.1"
                     /translation="MQEKSLNIKGVEWRYLAGGRGGQALLMFHGAAGGAETMQGLAEH
                     FADEYRTIAPTVADVSRLDEVCDAASAILDREHVGRAVVFGGSFGGMLAQAFLRRRWR
                     QVEHLVLLSTGAPNRALGARTERMTRLFRLMPFPLLRGLMKLEVTRGLGARAPAEQAE
                     RVAEFRRRLEDYFDRRLTKETLLARVALGVDFNTNESYAPGDCPEWRGRTLIIESDDD
                     PMVSAEDRRRLRDTYPGALVCTFAGAGHLIPLLRLEELVEVVKAFLKEDYKPPSVVEH
                     CPVI"
     gene            2409..2786
                     /locus_tag="VD968_14155"
     CDS             2409..2786
                     /locus_tag="VD968_14155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15583.1"
                     /translation="MKSDKSSEKAPRESRRRFTKAALAALAAAPAGLAAAQTPTPSPP
                     ESKAPPNPQPTPAPQAQAQQPETTPVGEAYAEVARARFGKQLSPEELARVKRDLEGNV
                     RAADRLRAHKLQNSDEPDFVFGA"
     gene            2799..>3932
                     /locus_tag="VD968_14160"
     CDS             2799..>3932
                     /locus_tag="VD968_14160"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HYE15584.1"
                     /translation="MLTDEQLFAPVSELAAHVRARRVSPVELAEGYLKRLETVGRRLG
                     AVATVMRETGLREAREAEREIRRGRYRGPLHGIPYGVKDLLATREAPTTWGAAPFRDQ
                     RFDFDATVVRRLREAGAVLIAKLSMIELAGGMGYNQAHASLQGPCRTPWNEGFWSGGS
                     SSGPGSAVASACVGFAIGSETSGSIITPAAFCGVTGLRPTYGAVSRHGAMALCWTLDK
                     LGPMCRSARDCGLVLAAIAGRDPADPTSRPHEFLPRYSNDGKPLGAGRRARRLRVGVM
                     KDSYEKAQDEVRKNFLASLGVLRAFAEVEMDVPLPDFPYGPAVGTIVDAEGASAFRDL
                     IESGRVKELASPEGRVGGYSASLVTAVDYLHAMRLRAPMRRAWA"
BASE COUNT          564 a         1419 c         1355 g          594 t
ORIGIN      
        1 ccggctcggc ggcgcacgcg gccacggggc tagcggaggt gaacggggcg cggctgtggt
       61 acgaggaggc ggggcggggg cctgcggtcg tcctcctgca cggcgggctg gtggacgcga
      121 ggctttggga cgaccagatg ctgcccctgt cgaggcgcta ccgggcggtg cgctacgacc
      181 tccgcggcta cggcaaatcg tcggccccga cggagagctt ctcgcacgtc gaagacctcc
      241 gggcgctgct cgacttcctg aagattgaca gggcgaccct cgtcgggctc tcgctcggcg
      301 gcatcgtggc cgcggacttc gcgctcgagc acccggagag ggtggagcga ctggtgctcg
      361 tcggcccggg ccttcgcggc gacatgcagc cgccggacaa ggcaatggag gaggtctgga
      421 aggccatcca ggaccgcgac gacgggaagg tggtcgcggc ctacatgggc agcccgctct
      481 acgcggccgt gcgcgcgggg accacagcgc gcgcccgcct ggaacggatg ctgactgaca
      541 acctcgacgg cctcgagact ctccggcccg gcttcatcaa gtaccccgag cctgcgacgg
      601 ccgaacgcct cggcgacgtg cgcgcgccga cgctcgtcgt cataggcgac cgcgacggcc
      661 gcaacctcct caacatcgcc gacacgctcg cggcgaaaat tcccggcgcg cgcaaggccg
      721 tcatacgcgg ggcgagccac cacccgcccg tcgagacgcc gaaggagttc aaccgcatcc
      781 tgctcggctt cctgcgcgag cccttgccgg ccggaaaata gccgctgcgt ctgcggcacc
      841 tctatggctt cgattttcac gcacgcgttc gtggccgtcg cggcggggag ggtttacgcg
      901 gcgggagagg cgccggcgcg cttctggctg ctgtcggcgg cgtgcgccgt cgcgcctgac
      961 gcggacgttg cggccttcgc cttcggcgtc ccctacggct cgacgttcgg ccaccgcggc
     1021 ttcactcact cgctcgcgtt cgcgctgctg ctcggcttcg ccgtcgtggc gctcttcttc
     1081 cgcggggcgg ggtttaagac taggtggtcg ctcattgcat acttctccgc cgtcacggcc
     1141 tcgcacgccg tgctcgacgc gctcaccaac ggcgggctcg gcgtcgcctt cttctcgccc
     1201 ttctcgaacg aacgctactt cttccccttc cgccccgtcg tggtctcgcc catcggcgtc
     1261 gccagcttct tcagcgactg gggcgtggcc gtcatcaaga gcgagttggt ctgggtctgc
     1321 ggccctgcgg cgctcgccgc catcgccgtg ttactcttcc ggcagagggc ggcgcggcgc
     1381 gacgagaagg catgagactg atcttcatat tctcgcccgt cggggggcgc gagagcctcc
     1441 gcatagacaa cacccgtctg gcacctgccg aggcagcgcg ccgcatcgcc gagcactacg
     1501 ggctggcggg cggcggccgt tagacggttt tcatcttccc gcgcatgcag gagaagagcc
     1561 tgaacataaa gggcgtggag tggcgctacc tcgcgggcgg gcgtggcggg caggcgctgc
     1621 tcatgttcca cggcgcggcg ggcggcgcgg agacgatgca ggggctcgcc gagcacttcg
     1681 ccgacgagta ccggacaatc gcgccgacgg tcgccgacgt gtcgcgcctg gacgaagtgt
     1741 gcgacgcggc gagcgccatt ctcgacaggg agcacgtcgg acgcgccgtc gtcttcggcg
     1801 gctcgttcgg cggcatgctc gcgcaggcgt tcctgcgcag gcgctggcgg caggtcgagc
     1861 acctcgtctt gctgagcacc ggcgcgccga accgcgccct cggcgcgcgg actgagagga
     1921 tgacgcgcct cttcaggctg atgcccttcc ccctcctgcg cgggctgatg aagttggagg
     1981 ttacgcgcgg cctcggcgcc cgcgcgcccg ccgagcaggc cgagcgcgtc gccgagttca
     2041 ggcggcgcct tgaagactac ttcgaccggc ggctgacgaa agagacgctg ctcgcgcgcg
     2101 tcgcgctcgg cgttgacttc aacacgaacg agtcttacgc gcccggcgac tgccccgaat
     2161 ggcgcggccg cactctcatc atcgagtcgg acgacgaccc tatggtctcg gccgaagacc
     2221 gtcggcggct gcgcgacacc taccccggcg cgctcgtctg caccttcgcg ggcgccggcc
     2281 acctgatacc gctcctgcgc ctcgaagagc ttgtcgaagt cgtcaaggcg ttcctgaaag
     2341 aagattacaa gccgccgtcg gtcgtagagc actgccccgt gatttaatcg agaggtcgga
     2401 gtgaaaagat gaagagcgat aagagttcgg agaaggcccc gcgggagtcg cggcgcaggt
     2461 tcacgaaggc tgcgctggcc gccctagccg ccgcgcccgc gggtctcgcc gccgcgcaga
     2521 cgccgacgcc ctcaccgccc gagtcgaagg cgccgcccaa cccgcagccg acccccgcgc
     2581 cgcaggccca ggcgcagcag ccagagacga cgcctgtggg cgaggcttac gcggaggtcg
     2641 cgcgggcgcg cttcggcaag cagctctcgc ccgaagagct cgcgcgcgtc aagcgcgacc
     2701 tcgaaggcaa cgtccgcgcc gccgaccgcc tgcgcgcgca caagctacag aactccgacg
     2761 agcccgactt cgtcttcggc gcataacggg ggcacgacat gctcacagac gaacaactct
     2821 tcgcgcccgt ctcggaactt gcggcgcacg tccgcgcccg ccgcgtctcg cccgtcgagc
     2881 tggccgaagg ctacctcaag cgtttggaga cggtaggccg ccggctcggc gccgtcgcga
     2941 ccgtgatgcg cgagaccggc ctgcgcgagg cgcgcgaggc cgagcgcgag attcgccgag
     3001 gccgataccg cggcccgctc cacggcatac cctacggcgt caaagacctc ctcgccacgc
     3061 gcgaggcgcc gacaacgtgg ggcgccgcgc ccttccgcga ccagcgcttc gacttcgacg
     3121 cgaccgtagt ccgccgactg cgtgaggccg gcgccgtcct catagcaaag ctctcgatga
     3181 tagagctcgc cgggggcatg ggctacaacc aggcccacgc ctcgctacag ggcccgtgcc
     3241 gcacgccgtg gaacgaaggg ttctggagcg gcgggtcgtc ttcggggccg ggctcggccg
     3301 tcgcctccgc ttgcgtcggc ttcgcgatag gctccgagac ttcgggttcc atcatcacgc
     3361 ccgctgcctt ctgcggcgtc acgggcctgc ggccgaccta cggcgccgtc tcgcgccacg
     3421 gcgcgatggc cctgtgctgg acgctcgaca agctcggccc catgtgccgc tcggcgcgcg
     3481 actgcggcct cgtgctcgcc gccatcgccg gccgcgaccc ggccgacccc acttcgcgcc
     3541 cgcacgaatt cctgccgcgc tactctaatg acggcaaacc gctgggcgcc ggccgtcgcg
     3601 cgaggcgctt gcgagtcggc gtgatgaagg actcttacga gaaggcgcag gacgaggtgc
     3661 gaaagaactt cctcgcctcg ctcggcgtgc tgcgcgcgtt cgcggaagtc gagatggacg
     3721 tgccgctccc tgacttcccc tacggccccg ccgtcgggac gattgttgac gccgagggag
     3781 cgagcgcctt tcgcgacctc atcgagtcgg ggcgcgtgaa ggagctcgca tcgcccgagg
     3841 gccgcgtcgg cggctactcc gcctcgctcg tcacggccgt tgactacctg cacgcgatgc
     3901 gcctgcgcgc gcccatgcgc cgcgcatggg cc
//
LOCUS       DASPKR010000527         6590 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1371893, whole genome shotgun sequence.
ACCESSION   DASPKR010000527 DASPKR010000000
VERSION     DASPKR010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6590)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6590
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1371893"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..346
                     /locus_tag="VD968_14165"
     CDS             <1..346
                     /locus_tag="VD968_14165"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE15585.1"
                     /translation="YSHPQRQFPFYSSAAVIDARVTVGGRDKIVHQLDAYTGRELWAF
                     PTQARVESSPAVAGGRVFVGSNDGRLYVLEFYSGRKVAEFNAGSPISASPAVASGRVV
                     VGAQDGKLYCFG"
     gene            complement(444..968)
                     /locus_tag="VD968_14170"
     CDS             complement(444..968)
                     /locus_tag="VD968_14170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15586.1"
                     /translation="MRHRIPLLSLACAALAAAAAAAVFALARPNFTGTWELDQSKSHS
                     VPQDMRQTMTVAHEGDRVSVETKIVTPQGERVVKDSYTLDGKEAEFTPQRPPNAPPDA
                     PAPKGKRTARWMANDRGFLVEEEIINPTPQGPETTLVARKWVAWPDGTISIEIITERG
                     GNAFNNKRVFVKKS"
     gene            complement(989..2623)
                     /locus_tag="VD968_14175"
     CDS             complement(989..2623)
                     /locus_tag="VD968_14175"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter family protein"
                     /protein_id="HYE15587.1"
                     /translation="MIPAAFVFVYLAAVVYIGVFAFRRTKSHKAEDYFLANRSFGTFV
                     FLMSLFGTNMTAVAILGSSGHAFTNGIVTYGLMASSSGLVIPLTIFLIGTRVWALGKK
                     YGFITPVQMFRDRWECAHIGTVIFAVQAVLLVPYIIIGIMGGGTTLSAISGGAVPYWF
                     GGAVVAMVVMTYVFFGGMRGTAWVNTFQTLLFLVFGLIAIGVIGAGMGGFRASAEALG
                     ASQATSWLLTRERISPYYFFSYTFIPLSAIAFPHILIFCLTAKRMANFKKTVIFYPLC
                     ILLIWLPCVFLGVMANRVQDVPQIRAKQEARRVLATQGKAMEPAQRDELREQAAGDDV
                     ILLLLHRYAPLWLAGILGAGIMAAVMASDSQILALSTMFTEDVFAFYGGKRRYGEAVQ
                     VQMGRAFVIILTIAAYVVALRAPETIFEIAIQYAFSGFAALSPLMVAAVFWRGSTKWG
                     ALASAIWVAAAVAAVAAFQQTVPAPAPGPGSTTVFWSIGGTEVLARTPSGTSVFGFMP
                     VVPMVLVSALLMFVVSSLTRKPGAATLERYFPAART"
     gene            complement(2620..2856)
                     /locus_tag="VD968_14180"
     CDS             complement(2620..2856)
                     /locus_tag="VD968_14180"
                     /inference="COORDINATES: protein motif:HMM:NF023183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3311 domain-containing protein"
                     /protein_id="HYE15588.1"
                     /translation="MKRTLLVLAVAALYALHQDVWFWRDRTLVFGVIPVGLFYHGCFS
                     VAASLLMWALVRHAWPAHVEAEVEAREREGGDER"
     gene            3335..6550
                     /locus_tag="VD968_14185"
     CDS             3335..6550
                     /locus_tag="VD968_14185"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choice-of-anchor Q domain-containing protein"
                     /protein_id="HYE15589.1"
                     /translation="MKPTKQSLSQLRKRAFLTLLLASLAAVAAPLGGVGGWFSASAAT
                     TFTVNSTGDGGDANLGDGLCNDGAGNCTLRAAIQQANALGGADTIQFSVTGTINLTGP
                     LPDLSTDMTITGPGSGLLTVRRDTGGDYRVLTVGIPNTSGVTVSISGLTVTNGKTRDG
                     ANSNVGSADNGQVGGGVLNYSTLTMTDVAVTGNRTGAGGSSPVFGGEGGDGGGIFNAG
                     TLTLTNCSVNGNFTGNGGEGNNGGGNGGDGGGILNANLLTMTGGTVSNNTTGTAGPTV
                     GIGRTGGRGGGIFSAAVVNLTGVSVSNNTTGGGSPGANAFGGHGGGLYLDGGSATMTN
                     CIVSGNTTGLSPAGTNGYGGGIENSAALVIRNSTISGNTGNAAGAILNRLALNMVNST
                     VSGNLLNGSGAAIASSDSFSSLRLTNSTIAFNAGQGLHGNTGSGFIRNTIIARNAGGV
                     GHDAFGTFNSQGNNIVGVADGSEGFTAAGDQTGTSAAPLDPKLGPLASNGGPTLTHAL
                     LAGSPALDAGNNALALDPSGSALTTDQRGPGFPRVVDSEDAGTVATVDIGAYEKQGSD
                     GAVNNPPTFTKGPDQTVAEDSGPQTVTGWATGISAGAGDTGQTVTFIVTGNTNPGLFS
                     AGPAVSPDGTLTYTPAPDANGSATITIILKDDGGTANGGQDTSAPQSFVITVTPVDDP
                     AGGSFEFAQASFSVAEGGGGITILVRRTGVTTGAASVGYLTDDGADNSTSTPCSSTGG
                     MALSRCDFTLAVGRLDFAAGETEKTFEVLITDDSYIEGTESLTLRLEAPAGGAALGSQ
                     ATATLQITDDAQESSGNPIDNSEDFVRQHYHDFLNRQPDAGGLAFWVNGIESCGADQQ
                     CRQVKRTDTSAAFFLSIEFQETGYLVYRTYKAAFGNLPSAPVPVRLREFLADTRQIGE
                     GVIVGTPGWPEKLEANKDAYMLEFVQRPEFLAAYPSTMTPAQFVDALNANAGGALSQE
                     ERDQQVAALSADNTAQGRADVLRAVAEDEQLRQAEFNKAFVLMQYFGYLRRNPNDAPD
                     TGFGGYNFWLGKLEEFGGDWRRAEMVRAFIESIEYRRRFAP"
BASE COUNT         1192 a         2247 c         2205 g          946 t
ORIGIN      
        1 ctacagccac ccgcagaggc agttcccctt ttactcttcg gcggctgtga tagacgcgcg
       61 cgtgacggtg ggcgggcgcg acaagatcgt gcaccagctc gacgcgtaca cgggccgcga
      121 gctgtgggcg ttcccgacgc aggcgcgcgt cgagtcgtcg ccggccgtgg cgggcggccg
      181 cgtcttcgtc ggctcgaacg acggcaggct ctacgtctta gagttttact cgggcaggaa
      241 ggtcgctgag ttcaacgccg gctcgcccat ctcggcctct ccggccgtcg cgtcggggcg
      301 cgtcgtcgtc ggcgcgcagg acggcaagct ctactgcttc ggataaaaat tagccacata
      361 ggcagaggga aaagaaagaa ggcagaaggc agtcgggaag atttctccgg ctgccttctg
      421 ccttcttctc tgtgcctccg tggctaactc ttcttgacga agacgcgttt gttgttgaag
      481 gcgttgccgc cgcgctcggt gatgatctcg atggagatgg taccgtcggg ccaggcgacc
      541 cacttgcgtg cgacgagggt ggtctcaggc ccctgcgggg tcgggttgat tatctcctcc
      601 tcgacgagga aaccgcggtc gttagccatc cagcgcgcgg tgcgcttgcc cttcggcgcg
      661 ggggcgtccg ggggggcgtt gggcgggcgc tgaggcgtga actcggcctc cttgccgtcg
      721 agcgtgtagg agtccttgac gacgcgctcg ccctgcggcg tgacaatctt cgtctcgacg
      781 ctcacgcggt cgccttcgtg cgcgaccgtc atcgtctgcc tcatgtcctg cgggacgctg
      841 tggctcttgc tctggtctag ctcccaggtg cctgtgaagt tcgggcgcgc gagcgcgaag
      901 acggcagcgg cggcggcggc ggcgagcgcc gcgcacgcta gagagagaag ggggattctg
      961 tgcctcatcc tttgagcctc ctgcggtttt aagttcgtgc cgcggggaaa tatctttcga
     1021 gcgtcgcggc gccgggcttc ctcgtgagcg acgagacgac gaacataagc agcgccgaca
     1081 ccaagaccat cggcacgacc ggcatgaagc cgaagacgct cgtccccgag ggcgtgcgcg
     1141 cgagcacctc agtcccgcct attgaccaga agaccgtcgt ggagcccggc cccggcgcgg
     1201 gcgccggcac ggtctgctgg aaggcggcga ccgccgcgac cgccgcggcg acccaaatgg
     1261 ccgaggcgag cgcgccccac ttcgtgctgc cgcgccagaa gacggccgcg accatcagcg
     1321 gcgagagcgc cgcgaagccc gagaacgcgt actgtatcgc tatctcgaag atggtctcgg
     1381 gcgcgcgcag cgcgacgacg tatgcggcaa tcgtcagaat gatgacgaaa gcgcggccca
     1441 tctgaacctg cacggcctca ccgtacctcc gcttgccgcc gtagaaggcg aacacgtcct
     1501 ccgtgaacat cgtcgagagc gcgagtatct gcgagtccga agccatgacg gcggccatga
     1561 tgcccgcgcc gagtatgccg gcgagccaga gcggggcgta acggtggagc agaaggagta
     1621 tcacgtcgtc gcccgcggcc tgctcgcgca gctcgtcgcg ctgcgccggc tccatcgcct
     1681 tgccctgggt ggcgagcacc cgtcgggcct cctgcttggc tcgtatctgc ggcacgtcct
     1741 gcacacggtt cgccatcacg cccaaaaaga cgcacggcag ccagatgagc agtatgcaga
     1801 gcgggtagaa gatgacggtc ttcttgaagt tcgccatccg cttggccgtc aggcagaaga
     1861 tgagtatgtg cgggaaggct atggccgaga gcggtatgaa ggtgtagctg aagaagtagt
     1921 agggcgatat gcgctcgcgc gtaaggagcc acgatgtcgc ctggctcgcg ccgagcgcct
     1981 cggccgacgc gcggaagccc cccatgccgg cgccgatgac gccgatggcg atcagcccga
     2041 agacgaggaa gaggagcgtc tggaacgtgt tgacccacgc cgtgccgcgc atgccgccga
     2101 agaagacgta ggtcatcacg accatagcga ctacagcgcc gccgaaccag taaggcacgg
     2161 ccccgcccga gatggccgaa agggtggtgc ctcctcccat gatgccgatg atgatgtatg
     2221 ggacgagcag cacggcctgg acggcgaaga tgacggtgcc gatgtgcgcg cactcccagc
     2281 ggtcgcggaa catctgcacg ggcgtgatga agccgtactt cttcccaagc gcccagacgc
     2341 gcgtgccgat gaggaagata gtgagcggga tgacgagccc cgaggaggag gccatcagcc
     2401 cgtaagtgac tatgccgttc gtgaaggcgt ggcccgagga tccgagaatc gccacggcag
     2461 tcatgttcgt cccgaacagg gacatcaaaa agacgaaggt gccgaacgag cggttggcca
     2521 ggaagtagtc ctcggccttg tggctcttcg tgcgcctgaa ggcgaagacg cctatgtaga
     2581 ctaccgcggc gagatagacg aagacgaagg cggccggtat caacgctcgt cacccccttc
     2641 gcgctcgcgc gcctcgacct cggcctctac gtgggcgggc cacgcgtggc gcacgagcgc
     2701 ccacattagg agcgacgccg ccaccgagaa gcagccgtgg tagaagagcc cgacggggat
     2761 gacgccgaag acgagcgtgc ggtcgcgcca gaaccagacg tcctggtgga gcgcgtacag
     2821 ggcggcgacg gccaggacga gcagtgtgcg tttcatcggg gcgtattatc ctccggaatc
     2881 cggccgggct gttgtaaaaa ggctgtaaaa acggcggcgg cgcagtataa gctaaatagc
     2941 ggtagggagc gagagcggcg ctctacacga gcgatgcccc gcccagccaa ctaatcagcc
     3001 ccggcccgaa tcaaaaaccg tttggccgcg tcaggctaat catcccgggc ggcggcgtcg
     3061 caggcaaata tttagcgcgg ccagccgtat ttctcgaccc tgacacggca ctgttaactc
     3121 tgtaacggcc cacagcggag gccgccgact cgtccgagac gcgccggatg aactcccgtc
     3181 cgccgtctca cgcaccttta ccattcaaag agccggcacg aacgtcaggc taattcagtc
     3241 ccgttctccg cgcccgctct gcgccgggga cagctctgcc ggggagaaga acggggcaga
     3301 gccccacaga acacacaggg aaaggaacac aatcttgaag cccacgaagc aatcactgtc
     3361 gcagctcagg aagcgcgcgt ttctgactct gttgctggcg agcctggcgg ccgtggcggc
     3421 cccgctcggc ggcgtcgggg ggtggttttc ggcctcggcc gctaccacct tcaccgtcaa
     3481 ttcaaccggc gacggcgggg acgctaacct cggcgacggc ctctgcaacg acggcgcggg
     3541 caactgcacc ctgcgcgccg ccatccagca ggccaacgcc ctcggcgggg ccgacacgat
     3601 tcagttctcc gtcaccggca ccatcaacct gacgggcccg ctgcccgacc tctccaccga
     3661 catgaccatc acggggccgg gctcgggcct gctgacggtg cggcgcgaca cggggggcga
     3721 ctaccgcgtg ctcaccgtcg gcatcccgaa cacctctggc gtgacggtct cgatctcggg
     3781 gctgaccgta accaacggta agacgcggga cggcgccaac tctaacgtcg gctcggccga
     3841 taacggtcag gtcggcggcg gcgtcctgaa ctacagcacg cttaccatga cggacgtcgc
     3901 cgtgaccggc aaccgcacgg gcgcgggcgg ctcgagcccc gtcttcggcg gcgagggcgg
     3961 cgacggcggc ggcatcttca acgccggcac cttgacgctg acgaactgct cggtcaacgg
     4021 gaacttcacg gggaacggcg gcgagggcaa caacggcggc ggtaacggcg gcgacggcgg
     4081 cggcatcctc aacgcgaacc tgttgacgat gaccggcggc accgtcagca acaacaccac
     4141 cggcaccgca ggcccgaccg tcggcatcgg gcgcacgggc ggccgcggcg gcggcatctt
     4201 cagcgcggcg gtcgttaacc tgaccggcgt cagcgtcagc aacaacacga ccggcggcgg
     4261 cagccccggc gccaacgcct tcggcggcca cggcggcggc ctctacctcg acggcggctc
     4321 ggcgacgatg acgaactgca tcgtcagcgg caacacaacc ggcctgagcc ccgcggggac
     4381 gaacggctac ggcgggggca tcgagaactc ggccgccctc gtcattcgca acagcaccat
     4441 cagcgggaac acgggcaacg ccgccggggc catcctcaac cgcctggcgc tcaacatggt
     4501 gaactcgacc gtcagcggca acctcctcaa cgggagcggc gcggccatcg ccagcagcga
     4561 ctccttctcc agcctgcgcc tgacgaacag cacgattgcc ttcaacgccg gccagggcct
     4621 gcacggcaac acgggctccg gcttcatccg caacaccatc atcgcacgca acgcgggcgg
     4681 ggtcggccac gacgcgttcg gcaccttcaa ctcgcagggg aacaacatcg tcggcgttgc
     4741 cgacggcagc gagggcttca cggccgccgg cgaccagacg ggcacctcgg ccgcgcccct
     4801 cgacccgaag cttggcccgc tcgcctcgaa cggcggcccg acgctcacgc acgccctgct
     4861 cgcgggcagc cccgcgctcg acgccggcaa caacgcgctc gccctcgacc cgtccggcag
     4921 cgcgctcacg accgaccagc gcggccccgg cttcccccgc gtcgttgatt ctgaagacgc
     4981 gggcaccgtc gccaccgtgg acatcggcgc atacgagaag cagggctccg acggggcggt
     5041 caacaacccg ccgaccttca cgaaaggccc cgaccagacg gtcgccgaag actccggccc
     5101 gcagaccgtg accggctggg ccacgggcat cagcgcgggg gcgggcgaca ccggccagac
     5161 cgtcaccttc atcgtcacgg gtaacaccaa ccccggcctc ttctcggccg ggcccgccgt
     5221 cagccccgac ggcacgctga cctacacgcc cgcgccggac gccaacggca gcgcgactat
     5281 cacaatcatc cttaaggacg acggcgggac ggccaacggc ggccaggaca cctcggcccc
     5341 gcagtccttc gtcatcaccg tcacgcccgt tgacgacccg gcgggcggca gcttcgagtt
     5401 tgcgcaggcc tcgttctccg tggccgaggg cggcggcggc attacgattc tggtcaggcg
     5461 caccggcgtc acgaccggcg ccgcgtcagt gggctacctg actgacgacg gcgcggacaa
     5521 cagcacgtcc acgccctgct cgtccacggg cggcatggcg ctttcgcgct gcgacttcac
     5581 gctcgccgtc ggccggctcg acttcgccgc cggcgagacc gagaagacgt tcgaggtctt
     5641 aatcaccgac gactcctaca tcgaggggac ggagagcctc acgctccggc tcgaagcccc
     5701 ggcaggcggg gcggcgctgg ggtcgcaggc cacagccacg ttgcagatta cggacgacgc
     5761 gcaggagtct tcgggcaacc cgatagacaa ctccgaggac ttcgtgcgcc agcactacca
     5821 cgacttcctc aaccgccagc cggacgcggg cggcctagcc ttctgggtga acggcatcga
     5881 gtcctgcggc gccgaccagc agtgccgtca ggtcaagcgc accgacacgt cggcggcctt
     5941 cttcctctcg atagagttcc aggagacggg ctacctcgtc taccggactt acaaggcggc
     6001 cttcggcaac ctgccgagcg cgcccgtccc cgtccgcctc cgggagttcc tcgccgacac
     6061 ccgccagata ggcgagggcg tgatagtcgg cacgccgggc tggcccgaga agctcgaggc
     6121 caacaaggac gcctacatgc tggagttcgt gcagcggccc gagttcttgg cggcctaccc
     6181 gagcacgatg acgccggcgc agttcgtcga cgccctgaac gcgaacgccg ggggcgccct
     6241 ctcgcaggag gagcgcgacc agcaggtggc ggcgctttcg gccgacaaca cggcgcaggg
     6301 ccgcgccgac gtgctcaggg cggtggccga ggacgagcag ctacggcagg ccgagttcaa
     6361 caaggcgttc gtgctgatgc agtacttcgg gtacctgagg aggaacccga acgacgcgcc
     6421 cgacacgggc ttcggcggct acaacttctg gctcggcaag ctggaggagt tcggcggcga
     6481 ctggcgccgc gccgagatgg tcagagcctt catcgagtcc atcgagtacc gccggaggtt
     6541 cgcgccgtag gggcggccgc ggcggcacag ccagaggtta attcagaggg
//
LOCUS       DASPKR010000528         7036 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_336292, whole genome shotgun sequence.
ACCESSION   DASPKR010000528 DASPKR010000000
VERSION     DASPKR010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7036)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7036
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336292"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /locus_tag="VD968_14190"
     CDS             complement(<1..600)
                     /locus_tag="VD968_14190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15590.1"
                     /translation="MIKNAFNDLGGAARSLFRGKAALTLLSLLYLLALACAYLFFATG
                     VATAGQLVISATAAVVVPLLFFLLQSLIAHAAVGEGATAATLMRRALSDFGKILLVSL
                     PLIALGVLFIYLIGKLQTWLPAPDTSAAAARAAAAGPDVRAGRPLYWQDVLVSTLRLL
                     LLGFALPLAAAHLWLSTARDGLKATLRRAHRVIARAFAPA"
     gene            complement(615..5543)
                     /locus_tag="VD968_14195"
     CDS             complement(615..5543)
                     /locus_tag="VD968_14195"
                     /inference="COORDINATES: protein motif:HMM:NF019323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MG2 domain-containing protein"
                     /protein_id="HYE15591.1"
                     /translation="MSRRTLLTSLAVYAAAAALLVGFVVLRVKTQHRFAAQAAPESLP
                     YGGRTPTPPDEHAKPFFSLHTSRTYATTDRARVFVNYRGVKDLDFRVYKVKDPVQFFR
                     QLDDPHRVGEDEEAAVGKQIERKPTFLEKLRQFKSVVYGAIKGYVRAQLQSQSRKGFN
                     QKFRASDEDDTSNRTPLNVADYARVPLLNPDQMVSSWREKLPPLEDVYDRRMISLGRR
                     EPGVYLIEAVNGDLRAFGVTIVTDIATVQKTSPDGSMLVYAVERKSGAPREGVRVEVL
                     RAKQPVVSGVTDGQGLLSLKVVDRKKEEEKRRAAEEAAEAEEEGGAAAEGEQPIEEPV
                     DNSYLVMATQGDNFAISDLDSYYFGGEGEEGGAESLKSYLYTDRPVYRPEQKVYFKGI
                     MRERTEGGYRLPAGRTVSVTVDAPDGSSVYQGELALSSRGTFSGEFDLPEESALGSYN
                     INAQLDDASASGYFDVQEYKKPEYKVKVTTPQAYVRTGERTKFTVTANYYFGSPVARA
                     AVKYYVYRSRDYGWWGEGGDSEQDEFGEDPTAEEGGGGYGYGYDEQMMLEGEGRLDAS
                     GRLDVEFTVPQAGEKETWDYTYRLDAEVTDAARRSLQGSTSFTGVRSFTVAYAGPERY
                     VYYQGEPARINVTARDREGRPVQTNVGLTFYERRWEKVIKRDSEGYEYPDYETREREL
                     HRAGVQTNEQGEAVYEYAVPAGGSILIKTSVEEAGRPVQTEAGYIWATDREGQFSDVS
                     YQGEGVIKLVPDKKSYRVGETAKVLALLPTDKAHLLVTTEMTGILTTRRMGAPGRAVV
                     IEVPVEARYAPNVFLNVTYVRNSDLYSETVSLSVPARDKLLDLQIIPNKKEFRPRETA
                     SYTLLARNGDGSPAAGAEISFGVVDESIYQIAPEGVEDIRRAFYGRTYGSSVQMGFSV
                     DYYFSGYAGQKVVQLARGKRARQLADMKNEADLANPLVRKIFKDTAYWQPNVVAGADG
                     KATVKVELPDNLTTWRATARAVTADTKVGVAVSRVVERKDLILRLAMPRFLTAGDIVT
                     LSGIAHNYTKSEKVTRISVEVAGAELLDPAQQTATIPSLGEHRVNWRVRAPASGELKV
                     IAKALTGDAAQSDALEMGIPVVPKGLKNTRADSFAFAEEEADKTVTLTLPANADPNAR
                     VLRVEATPSIAGALFGALDYLTSYPYGCTEQTMSSFLPNVIVTEALRTVESARVSGSN
                     DVGRKARRGLRRLYAFQHDDGGWGWWKDDQTNPWMTAYVVDGLVLARAAGYEVDEARL
                     ERGRNRLREMLAGADEAGSVSDDYAYMAYSLAASGDRETRFLDKLFGARARLSHYGRA
                     LLALALHARGDRRAQGAAAEIERSARGGGGEANWESVEATALSVKALARTLPGSEVLP
                     RAARWLVRSRRFGHHWLSTKETAFAIYGLIDYLKVSRELNPDYSLEIYVNGTQVLAKQ
                     MTAAEAASAQVFTLQRRGGEVGQSSEVRFVKRGRGMLYLSTSLTHHTNDEQTPAAGVP
                     ALKLTREYLRLSLTEKDDGTLGWKTEPLSADVRSGDIIVSRLRLEGERARYLMVEDPI
                     PAGCEQVSEVSGIELGHAEKDWSDWYSAREFRDNRSVLFLDYFDGSATFQYAMRVQVP
                     GQFRAAPARAELMYQPDTRANSANGALNILDK"
     gene            complement(5659..6486)
                     /locus_tag="VD968_14200"
     CDS             complement(5659..6486)
                     /locus_tag="VD968_14200"
                     /inference="COORDINATES: protein motif:HMM:NF018387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1175 family protein"
                     /protein_id="HYE15592.1"
                     /translation="MRPSPQAALGLIFAAALISNGCRQPAPQRAHASASRPAHAPAAE
                     RASRWADSDSDGLPDGAELHSLNDRRSFRDWFTLIAEAQSYRESDAWNESQRDCAGLV
                     RFAWREALRRHDRAWALRVGGEYDVVPPDVRAFDLEGGPLGEKLFRTRPGAFAEQDLR
                     DGTLSEFADARTLKEHNAEFVGRDRARAQRGDLLFFHQPFVQKYPYHVMIFVGESHRV
                     DEEGDDWVVYHTGAGPDGAGEVRELRLSELDRHPDPRWRPLPRNRNFLGFYRLKILE"
     gene            6813..>7036
                     /locus_tag="VD968_14205"
     CDS             6813..>7036
                     /locus_tag="VD968_14205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15593.1"
                     /translation="MKRRKAVTALAITLTSASVASCGAGAASPEQRAKGADNQGQPTS
                     KPLSQKGQLEIKERRAGDVVILDLSGEFKAG"
BASE COUNT         1044 a         2326 c         2486 g         1180 t
ORIGIN      
        1 cgcgggcgcg aacgcgcgcg cgataacacg gtgcgcgcgc cgcagcgtcg ccttcagccc
       61 gtcgcgcgca gtcgagagcc agaggtgcgc tgccgcgagc gggagcgcga agccgaggag
      121 caggagcctc agagtcgaga cgagcacgtc ctgccagtag agcggccttc cggcgcgcac
      181 gtcaggcccc gccgcggccg cgcgcgcggc agccgccgac gtgtccggcg ccggaagcca
      241 cgtttgcagc ttccctatca ggtagatgaa gagcacgccg agcgctatga gcgggaggct
      301 cacgagcagg attttaccga agtcactgag cgcgcggcgc atgagcgtgg ccgccgtcgc
      361 cccctcgccc acggccgcgt gcgcgatgag cgactgcagg aggaagaaga gcagggggac
      421 gacgacggcc gcggtggcag aaatgacaag ctgccccgcg gtcgccacgc ccgtcgcgaa
      481 gaagaggtag gcgcaggcga gcgcgaggag gtatagcagg ctaaggaggg tgagcgccgc
      541 cttgccgcgg aagagtgagc gcgccgcgcc gcccaggtcg ttgaaagcgt tcttaatcat
      601 cgtcgcccct agcctcactt gtcgagaatg ttgagcgcgc cgttcgcgga gttggcgcgc
      661 gtgtcgggct ggtacatcaa ctccgcgcgc gccggcgccg cgcggaactg ccccggcacc
      721 tgcacgcgca tcgcgtactg gaaagtggcc gagccgtcga agtagtcgag gaagagcacc
      781 gagcggttgt cgcggaactc gcgcgcgctg taccagtcgc tccagtcctt ctccgcgtgg
      841 ccgagctcta tgccgctcac ctccgacacc tgttcgcagc cggccggtat cgggtcttcg
      901 accatcaggt agcgggcgcg ctcgccctca aggcgcaggc gcgagacgat tatgtcgccc
      961 gagcgcacgt cggccgagag cggctcggtc ttccagccga gcgtgccgtc gtccttctcc
     1021 gtaaggctca ggcgcaaata ctcgcgcgtg agcttgagcg ccgggacacc ggccgcgggc
     1081 gtctgctcgt cgttcgtgtg gtgcgtgagc gacgtagaga ggtagagcat cccgcgcccg
     1141 cgcttgacga agcgcacttc gctcgactgg ccgacctcgc cgccgcgccg ctgtagcgta
     1201 aagacctgcg ccgaggcggc ctcggccgca gtcatctgtt tggctagaac ctgcgtgccg
     1261 ttgacgtaga tttcgagcga gtagtcgggg ttcaactctc ggctgacctt gaggtagtca
     1321 atcaggccgt agatggcgaa ggctgtctcc ttcgtcgaga gccagtggtg gccgaagcgc
     1381 cggcttcgga cgagccagcg cgccgcgcgc ggcaggactt cgctcccggg gagcgtgcgc
     1441 gcgagcgcct tgacggagag cgccgtggcc tcgaccgact cccagttggc ctcgccgccc
     1501 ccgcccctgg ccgagcgctc gatctccgcg gccgctcctt gcgcgcgccg gtcgccccgc
     1561 gcgtgcagag cgagcgcgag cagggcgcgg ccgtagtgcg acagacgcgc gcgcgcgccg
     1621 aagagtttgt cgaggaagcg cgtctcgcgg tcgccgctcg ccgcgagcga gtaggccatg
     1681 taggcgtaat cgtccgagac ggagcctgcc tcgtcagcgc ccgcgagcat ctcgcgcagg
     1741 cggttgcggc cgcgctccag cctcgcctcg tcaacctcgt agccggccgc gcgcgcgagc
     1801 accagcccgt ccacgacgta tgcggtcatc cacggattgg tctggtcgtc cttccaccag
     1861 ccccagccgc cgtcgtcgtg ctggaaggcg taaagccttc gcaggccgcg ccgcgccttc
     1921 cggcctacgt cgttcgaccc gctcaccctc gccgactcga ccgtgcggag cgcttcggtg
     1981 acgatgacgt tcggcaggaa gctcgacatc gtctgctcgg tgcagccgta ggggtaagag
     2041 gtcaggtagt cgagcgcgcc gaagagcgcg ccggcaatcg agggcgtggc ctcgacgcgc
     2101 agcacgcgcg cgttcgggtc ggcgttcgcc gggagcgtca gcgtcacggt cttgtcggcc
     2161 tcctcctccg caaaggcgaa cgagtcggcg cgcgtattct taaggccctt cggcacgacg
     2221 ggtattccca tctccagggc gtctgattgc gcggcgtcgc ccgtcagagc cttggcgatg
     2281 accttaagct cgcccgaggc gggcgcgcgc acgcgccagt tgacgcggtg ctcgccgagg
     2341 ctcgggattg tggccgtctg ctgcgccggg tcgaggagct cggcgcccgc tacctcgacg
     2401 gagatgcgtg tgaccttctc cgacttcgtg tagttgtggg cgatgccgga gagcgtgacg
     2461 atgtcgcccg cggtgaggaa gcgcggcatg gcgaggcgga gtattaagtc cttgcgctcg
     2521 actacgcgcg agacggcgac gcccaccttc gtgtcggctg tgacggcgcg cgcggtcgcg
     2581 cgccacgtcg tcaggttgtc ggggagctcg accttcacgg tcgccttgcc gtcggcgccc
     2641 gccacgacgt tgggctgcca gtaggccgtg tccttgaaga ttttccgcac gagcgggttc
     2701 gcgaggtcgg cctcgttctt catgtcggcg agctggcgcg cgcgcttgcc ccgcgcgagc
     2761 tgaacgacct tctggccggc gtagccggag aagtagtagt caacggagaa gcccatctgc
     2821 acactgctgc cgtatgtgcg gccgtagaaa gcgcggcgta tgtcttcgac gccctcgggc
     2881 gctatctggt agatggactc gtccacgacg ccgaaggaga tttcggcgcc cgcggcaggg
     2941 ctcccgtcgc cgttgcgggc gagcagggtg tacgaggccg tctcgcgcgg gcggaactcc
     3001 ttcttgttcg ggatgatttg gaggtctaaa agcttgtcgc gcgcgggaac cgagagcgag
     3061 accgtctcgg agtagaggtc gctgttgcgg acgtacgtga cgttgaggaa gacgttgggc
     3121 gcgtagcgcg cctcgacagg cacttcgatg acgacggcgc ggccgggcgc gcccatgcgg
     3181 cgcgtcgtga gtatgccggt catctcggtc gtgacgagca ggtgcgcctt gtccgtgggc
     3241 aggagcgcca gaaccttcgc cgtctcgccg acgcggtacg acttcttgtc ggggacgagc
     3301 ttgatgacgc cctcgccctg ataggacacg tcggagaact ggccctcgcg gtcggtggcc
     3361 cagatgtagc cggcctccgt ctgcacgggg cggcccgcct cctcgactga ggtctttatg
     3421 aggatgctgc cgccggccgg caccgcgtac tcatagacgg cctcgccctg ctcgttcgtc
     3481 tgcacgccgg cgcggtgcag ctcgcgctcg cgcgtctcgt agtccgggta ctcgtagccc
     3541 tcagagtcgc gcttgatgac cttctcccag cggcgctcgt agaaggtgag cccgacgttg
     3601 gtctgcacgg ggcggccctc gcggtcgcgc gccgtgacgt ttatgcgggc cggctcgccc
     3661 tggtaataga cgtagcgctc ggggccggcg tatgcgaccg tgaagctgcg cacgcccgtg
     3721 aagctcgtcg agccctgtag ggagcggcga gcggcgtcgg tcacctccgc gtcgaggcgg
     3781 taggtgtagt cccacgtctc cttctcgccc gcctgcggga ctgtgaactc tacgtcgagg
     3841 cggcccgagg cgtcgaggcg gccctcgcct tcgagcatca tctgctcgtc gtagccgtag
     3901 ccgtagccgc ccccgccctc ctcggccgtc gggtcttcgc cgaactcgtc ctgctccgag
     3961 tcgccgccct cgccccacca gccgtagtcg cgcgagcgat agacgtaata cttgacggcg
     4021 gcgcgcgcaa ccggcgagcc gaagtagtag ttggccgtga cggtgaactt agtacgctcg
     4081 cccgtgcgca cgtaagcctg cggggtggtg actttcacct tgtactctgg cttcttgtac
     4141 tcctgaacgt cgaagtagcc gctcgccgag gcgtcgtcga gctgcgcgtt gatgttgtag
     4201 gagccgagcg cagactcctc cggcaggtcg aactcgccgc tgaaggtgcc gcgagaggag
     4261 agcgcgagct cgccctgata gacgctgctg ccgtccgggg catcgaccgt gacggagacg
     4321 gttcggccag cagggagcct gtagccgccc tcggtgcgct cgcgcatgat gcccttgaaa
     4381 tagaccttct gctcggggcg atagacgggg cggtcggtgt agaggtaact cttgaggctc
     4441 tcggccccgc cctcctcgcc ctcgccgccg aagtagtacg agtctaaatc cgagatggcg
     4501 aagttatcgc cctgcgtcgc catgacaagg taggagttgt caacgggctc ttcaatcggc
     4561 tgctccccct ccgcggcggc cccgccctcc tcttccgcct ccgcggcctc ttcggcggcg
     4621 cggcgcttct cctcctcctt cttcctgtca accaccttca ggctgaggag cccctgcccg
     4681 tcggtcacgc ccgagacgac gggctgcttg gcgcgcagga cttcgacgcg cacgccctcg
     4741 cgcggcgcgc cgctcttgcg ctcgaccgca tagacgagca tcgagccgtc gggcgaggtc
     4801 ttttgcacgg tcgcgatgtc cgtgacgatg gtcacgccga aggcgcgcag gtcaccgttt
     4861 accgcctcga tgagatagac gcccggctcg cgcctgccca gggagatcat gcggcggtcg
     4921 taaacgtctt cgagcggcgg cagcttctcg cgccaactgc tgaccatctg gtcggggttg
     4981 aggagtggga cgcgcgcgta gtcggctacg tttaagggcg tgcggttgct agtgtcgtct
     5041 tcgtccgagg cgcggaactt ctggttgaag cccttgcgcg actggctctg caactgcgcg
     5101 cggacgtagc ctttaatcgc gccgtaaacc acgctcttga actgccggag cttctcaagg
     5161 aaggtcggct tgcgctcgat ctgcttgcct acggcggcct cctcgtcctc gccgacgcgg
     5221 tgcgggtcgt cgagctgtcg gaagaactgc acggggtctt tcaccttata gacgcggaag
     5281 tcgaggtctt tgaccccgcg gtagttgacg aagacgcgcg cgcggtcggt ggtcgcgtag
     5341 gtgcggctgg tgtgcagcga gaagaagggc ttggcgtgct cgtccggcgg cgtgggcgtg
     5401 cgcccgccgt aggggagcga ctcgggcgcg gcctgcgccg cgaagcggtg ctgcgtctta
     5461 accctcagca ctacgaagcc gaccagcagg gccgcggcgg ccgcatagac cgccaaggag
     5521 gtgagcagtg tgcgacggga cataagcttt accagaaggc ggaaggcaga gagcagaagg
     5581 gagaaggcgg gaagccgggc gcggtcgaaa catggctcgt cttgaccgcc ttctgccttc
     5641 tgctctctgg cgtttttttc attcgagaat tttcagcctg tagaagccga ggaagtttcg
     5701 gttgcgcggg agcgggcgcc agcgagggtc ggggtggcga tccagctcgg agagccgcag
     5761 ctccctgacc tcgcccgcgc cgtcaggccc ggcgcccgtg tgatagacca cccagtcgtc
     5821 cccctcttcg tcaacccggt gcgactcccc gacgaagatc atcacgtggt aggggtactt
     5881 ctgcacgaag ggctggtgga agaagaggag gtcgccgcgc tgggcgcggg cgcggtcgcg
     5941 gccgacgaac tccgcgttgt gctccttgag cgtgcgcgcg tcggcgaact ccgagagcgt
     6001 gccgtcgcgg aggtcttgct cggcgaacgc gcccggccgg gtgcggaaga gcttctcgcc
     6061 cagtgggccg ccttccaggt cgaaggcgcg cacgtcgggc ggcaccacgt cgtactcgcc
     6121 gcccaccctc agcgcccagg cgcggtcgtg tcggcgcagc gcctcgcgcc acgcgaagcg
     6181 cacgagcccg gcgcagtcgc gctgcgactc gttccaggcg tcgctctcgc ggtaggactg
     6241 cgcctcggcg atgagcgtga accagtcgcg gaagctgcgg cggtcgttta aggagtggag
     6301 ctcggcgccg tcgggcaggc cgtcggaatc ggagtcggcc cagcgggagg cgcgctccgc
     6361 ggcgggggcg tgcgccgggc gcgaggcgga ggcgtgcgcc ctctggggcg ccggctggcg
     6421 gcagccgttt gaaatgagcg cggcggcgaa aatcaggccg agcgcggctt ggggggaggg
     6481 gcgcatcgct aacgtctgac gccggccggc gtcgggccgg gccgaaccac gatccttcgt
     6541 gcgcgctaaa gctatcacga ctgtcaaccg ttgtcccgct tttcgtagcg cggggcaggc
     6601 ccgcgcgcgc attgtcgccc tgcccgcgcg cctccccaac gcgggcgccg acacagccgc
     6661 gtccgtgacc cgcacagcgg cgccgcgcac gttcccccac gcccggcgct gtggctgccc
     6721 acacgccccc gcgcgaattg cccgagccgg cccggccttt tggccgtata atggccgcgc
     6781 caaggccgtt ctattaaaca caggaggcag taatgaaaag gcgaaaggct gtgaccgcgt
     6841 tggctataac tttgacctcc gcctcagtcg cctcgtgcgg cgcgggcgcg gcctccccgg
     6901 agcaaagggc gaagggcgcc gacaatcagg gccagcctac gtcgaagccc ctgagtcaga
     6961 agggtcagct agagataaag gagcgacggg cgggcgacgt ggtcattctg gatttgagcg
     7021 gcgaatttaa ggcggg
//
LOCUS       DASPKR010000529         8295 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_336346, whole genome shotgun sequence.
ACCESSION   DASPKR010000529 DASPKR010000000
VERSION     DASPKR010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8295)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8295
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336346"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..445
                     /locus_tag="VD968_14210"
     CDS             <1..445
                     /locus_tag="VD968_14210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15594.1"
                     /translation="LDEPMSGLDPVGRREVRDLIASLRSGGSTVFLCSHILSDIEVLC
                     DRAAVLRRGRLAHVGRLEELRAAGGGRGMEVVLAGAGAEALEAALAGVQGARVTATPG
                     GARVEVGTEGEVDAVLRAARPAGARLVAVHPVGNALEELFVGEAK"
     gene            complement(532..1182)
                     /locus_tag="VD968_14215"
     CDS             complement(532..1182)
                     /locus_tag="VD968_14215"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HYE15595.1"
                     /translation="MTKVTRCRHCGEEVEEGRNFCPHCGKPITPTGEAELSPAPAPPK
                     ETQRAAPPPVPAFGRARDDGDGSRRLIFIGAAILSALAVGLLAYWATRPSVRTGEDTL
                     AGAIRPDSPEFPPADRLVVEFDPDADALIGPTALGPYAVTMKPTVRNFTNRTVSGLEF
                     RVAGLDLDRRVIRQRTVVYAGEIEPNKISNPALSINFPQDNRPASLKLELTGVRFK"
     gene            complement(1211..3559)
                     /locus_tag="VD968_14220"
     CDS             complement(1211..3559)
                     /locus_tag="VD968_14220"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE15596.1"
                     /translation="MTRREKRSALDVRAKLMTMLAVLSLPLLIVGLMQLHKYQRSLND
                     QSATIARIEAEAAAAALEAWAESHPSEARGGQSLSAESARTLYARLRRRTPTGAHATV
                     SVFDPQGRAVSAGEGAAPLVPEKLPAEIEPQLWSDGVRRVTSVTRSEPSGWGVAVGVP
                     APENTPAGRAVLVLTATWALTLLASSLLAYWGVGRFTKPLRSLAVSASKLGGGDLTAR
                     ARVETDDEVGTLARSFNAMAESLQAKFDAVERQSAFIGEVLDSLPLCVAVLDARLIVR
                     KVNSAFAALAGRDAARLTGRGLYEAAAGLAALSDVVEEVRRTRRAFVSYGLPIELEPK
                     REGEGAEEAPKFWDVIVWPVTEQSEGRGDLLLILSEVSKRVRAERLATAAFAAEKSRA
                     AELASVINQMDEGVVIVGPEGRYRLNPAAARIFGHQPGEFEGGVKSLVVDMALRDMQG
                     RVLAPGETPMCRALEADEHVAGARYKIQRGDGTERVLYVSATPLSGEGVVAVFRDITE
                     DVKRHSELVEAYDRLREHDRMKSAFVANMSHELRTPLNVIIGLCQLLARDPQMPLAPL
                     QSDAVARMERNARALLELVNDTLEYSRLEAGRSALMIESLNVADVITSVAAGFEAEAR
                     EKKIELRLDLSPELGRVRTDRRKLTQVVSRLLSNAVKFTSVGAVIVRAAPDGPDRWYM
                     EVADTGIGISGDALTYIFEGFRQVDDRLARSYNGVGLGLAITRRIVELLDGEITVESK
                     QNEGSRFRITWPRQARPRTGTGSLVFPQSQQAGLRLAERRAS"
     gene            complement(3562..4077)
                     /locus_tag="VD968_14225"
     CDS             complement(3562..4077)
                     /locus_tag="VD968_14225"
                     /inference="COORDINATES: protein motif:HMM:NF025719.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsbRD N-terminal domain-containing protein"
                     /protein_id="HYE15597.1"
                     /translation="MLFAALFRENLDSLARELVDRLYADRRTDHARALSFRELVAHLP
                     DLLDELAYLLDSRAPYAETIEAAKRLRPFAQARFQQGALLDEVARELMLLRGALNDFL
                     WREAPGAGDAGGRELREALRRSNDFLDELIAQTILVYASSLRPVVETREPVWPPPRRR
                     RRGGAGRKGEP"
     gene            complement(4196..4582)
                     /locus_tag="VD968_14230"
     CDS             complement(4196..4582)
                     /locus_tag="VD968_14230"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE15598.1"
                     /translation="MESKSDARPVVLVVEDFEDNRFMMRRLLEMSGYEVVEAVNGRQA
                     IEMAESLRPDIILMDLSLPMLDGLTATRQIRQREGLGKVPIVAVSAHDSADFHAEALA
                     AGCNEYVTKPIDFDQLVQLLNQLTKK"
     gene            4798..5439
                     /locus_tag="VD968_14235"
     CDS             4798..5439
                     /locus_tag="VD968_14235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15599.1"
                     /translation="MKPLITGSQDEETLRTLGSASVQIVHDLKNQLNGLKLYATFLRK
                     RMEKSDRPQDELDTISKLIGGLERAAGDMTLLVRYGRPLELRRQPRTDLARLVEAATD
                     GAALTVEPGEYEGEFDAPLLSEALTNISAGSNGAGAEAVQVLLRREPAGGGAAAAVIE
                     WRGVAAAHDGDAFKNLAGGQGLRLALAAKIIRAHGGEAAQDGAVLHARLPLQA"
     gene            5515..6909
                     /locus_tag="VD968_14240"
     CDS             5515..6909
                     /locus_tag="VD968_14240"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE15600.1"
                     /translation="MERKDVRILVIDDEPMMADSLKQNLAEEGYTVDTASHGAQAVEM
                     FDGSGHHLAICDLQLPDRGMDGMDVLRHIKDTRPSTEVIVVTGYGTVERAVEATKAGA
                     FWFLEKPFDFDVLISLVERALERHELMTETETMRRQLSTRTEYFNIIGASKQMQTIYE
                     TIESVAKSDANVLIVGESGTGKELIANAIHYNSLRAKKPFIKVNCAALPKELIESELF
                     GHTKGAFTGAHAEKDGLIQHAEGGSLMLDEIAEMPVELQPKLLRVLQERSYRKLGSEK
                     TYPVDFRLISSTNRLPADAIRDGLLRDDLFYRISTITIHVPPLRERSEDIQLLAEHFL
                     KMYARKYQRSINGISQSAYQRLFAHGWPGNVRELQNVMERAVLLAKGGKIEPVDLPFD
                     NGSLPEKNAQGQGWDVPPNMTLEEIEKLVIERTLQRTGGNKQAAANLLGIYRPRLYSK
                     IKKYKIDIPALMTA"
     gene            complement(6989..7372)
                     /gene="queD"
                     /locus_tag="VD968_14245"
     CDS             complement(6989..7372)
                     /gene="queD"
                     /locus_tag="VD968_14245"
                     /EC_number="4.1.2.50"
                     /inference="COORDINATES: protein motif:HMM:NF013411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HYE15601.1"
                     /translation="MSGMFEVMIERNFSSAHQLRGYKGKCENLHGHNYRIEIYARGRE
                     LDNIGLLVDFGELKDAADDVVAYLDHRNINELPPFDEELNPSAENLARYILERVASRV
                     GDDRVRVYKVRCFETPTSVATYQTE"
     gene            complement(7381..>8295)
                     /locus_tag="VD968_14250"
     CDS             complement(7381..>8295)
                     /locus_tag="VD968_14250"
                     /inference="COORDINATES: protein motif:HMM:NF024703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helicase C-terminal domain-containing protein"
                     /protein_id="HYE15602.1"
                     /translation="EFIVAGDDRRYVYWAERRGRGLFLRASPIDVSTLLQDKLFERVE
                     TVVLTSATLASAGRFDFIRRRLGLADSDEEDGNAVAAKTDELVAPSGYNYEEQAVLYL
                     PPQMPDPRSPQWADAAAREVIKLLEISGGRAFVLSTSLSGMRALYERVAPEVDFPCFV
                     QGSASKAGLLEKFRTTPNAVLFATASFWQGVDVRGRQLSCVIIDKLPFAVPTDPVVAA
                     RQRFIEDQGGSSFYSYSIPQAVITLKQGVGRLIRSASDRGLLAVLDPRLRKQAYGRLF
                     LESLPPCRITSDLSEAAAVFEQDAPAVR"
BASE COUNT         1408 a         2765 c         2796 g         1326 t
ORIGIN      
        1 cctcgacgag ccgatgagcg gcctcgaccc cgtcggccgc cgcgaggttc gagacttgat
       61 agcgtcgctg cgctccgggg gctcgaccgt cttcctctgc tcgcacatac tctccgacat
      121 cgaagtcctc tgcgaccgcg ccgccgtcct gcgccgcggc aggctcgcgc acgtaggccg
      181 actggaagag ttgcgcgcgg cgggcggcgg gcgcgggatg gaagtggtgc tcgcgggcgc
      241 gggcgcggag gcgctcgaag ccgcgctcgc aggcgtgcag ggcgcgcgcg tgacggcgac
      301 gcccggcggc gcgcgcgtag aggtcgggac ggagggcgag gtggacgccg tgctcagggc
      361 cgcgcgcccg gccggcgctc gcctcgtcgc tgtccacccc gtcggcaacg cgctcgaaga
      421 acttttcgtc ggcgaggcga agtaaggccg gcgggtatca cgcgggttaa agaaagaggg
      481 ttgacgacag cggcgctgtc gtcaaccctc ttcgcctttg cggcccgcga cttatttgaa
      541 ccggacgccc gtcagttcga gcttgaggct ggcggggcgg ttgtcctggg ggaagttgat
      601 gctgagggcc gggttggaga ttttgttcgg ctctatctcc ccggcataga ccactgtgcg
      661 ctggcgtatg actctgcggt cgaggtcgag gccggcgacg cggaactcta agccgctcac
      721 ggttcggttg gtgaagttgc gcacggtcgg cttcatcgtc acggcgtagg ggccgagcgc
      781 ggtcgggcct ataagggcgt cggcgtccgg gtcgaactcg acgacgagcc ggtctgccgg
      841 cgggaactct ggcgagtcgg gccgtatcgc ccccgcgagc gtgtcttcgc cggtacgcac
      901 cgagggccgg gtcgcccagt aggccagaag ccccacggcg agcgccgaga ggatggccgc
      961 gccgatgaag atgaggcggc gcgagccgtc gccgtcgtcc ctcgctcggc cgaaggccgg
     1021 cacgggcggc ggcgccgcgc gctgagtctc tttaggcggc gcgggcgcgg gggatagctc
     1081 ggcctccccg gtcggagtga tgggctttcc gcagtgcggg cagaagttcc tgccctcctc
     1141 tacctcttcg ccacagtgcc gacagcgggt cactttcgtc acgccctcct ttccgacgaa
     1201 gaagacggct tcagctcgcg cgccgctcgg ccaggcgcag ccccgcctgc tgactctgcg
     1261 ggaacacgag cgagcccgtc cccgtgcgcg gcctcgcctg gcgcggccag gtgatgcgga
     1321 agcggctccc ctcgttctgc ttgctctcga ccgttatctc gccgtcgagc agctcgacta
     1381 tccggcgcgt gatggcgagc cccagcccga cgccgttata cgagcgcgcg aggcggtcgt
     1441 caacctgccg gaagccctcg aagatgtagg tgagcgcgtc gccggaaatc cctatgccgg
     1501 tgtctgcgac ctccatgtac catcggtcag ggccgtcggg ggcggccctg acaatcacgg
     1561 cgccgactga ggtgaacttc accgcgttcg acagcaggcg cgagacaacc tgcgtgagct
     1621 ttcgcctgtc cgtgcgcacg cgcccaagct cgggcgagag gtcgagccgc agctctatct
     1681 tcttctctcg cgcctcggcc tcgaagcccg ccgcgaccga cgtgataacg tccgcgacgt
     1741 ttaaggactc tatcatcagc gccgagcggc cggcctccag gcgcgagtat tcgagcgtgt
     1801 cgttgacgag ttcgagcagg gcgcgcgcgt tgcgctccat gcgcgccacg gcgtcggact
     1861 gcagcggcgc gagcggcatc tgcgggtcgc gcgcgagtag ctggcacaga ccgattataa
     1921 cgttcaaggg ggtgcgcagc tcgtggctca tgttggcgac gaaggccgac ttcatgcggt
     1981 cgtgctcgcg caggcggtcg tatgcctcga cgagctcgct gtgccttttc acgtcctcgg
     2041 tgatgtcgcg gaagacggcg acgacgccct cgccgctcaa aggcgtcgcg ctcacgtata
     2101 gcacgcgctc cgtgccgtcg ccgcgctgga tcttgtagcg cgcgcccgcg acgtgctcgt
     2161 cggcttcgag cgcgcggcac atgggcgtct cgcccggcgc gagcacgcgc ccctgcatgt
     2221 cgcgcagcgc catgtcaacg acgagcgact tgacgccgcc ctcgaactcg cccggctggt
     2281 ggccgaatat gcgcgcggcg gcggggttca ggcgatagcg cccctcgggg ccgacgatga
     2341 cgacgccctc gtccatctgg ttgatgacgc tcgcgagctc cgccgccctc gacttctctg
     2401 cagcgaacgc cgcggtcgcg agccgctcgg cccgcacgcg cttcgacacc tcggagagga
     2461 taagtaagag gtcgccgcgc ccctcgctct gctcggtcac gggccagacg ataacgtccc
     2521 agaacttcgg cgcctcctcg gcgccctcgc cctcccgctt cggctcaagc tctatgggga
     2581 ggccgtagct cacgaaggcg cggcgcgtgc gcctgacctc ctcgaccacg tcgctcaggg
     2641 cggcgagccc tgcggccgcc tcgtacagcc cccgcccagt caggcgcgcg gcgtcgcggc
     2701 ccgcgagcgc ggcgaaggcg gagttgactt tgcgcacgat gaggcgcgcg tcgaggacgg
     2761 ccacgcagag cggaaggctg tcgaggactt cgccgatgaa ggcgctctgc cgctcgacgg
     2821 cgtcgaactt ggcttggagg ctctcggcca tcgcgttgaa gctgcgcgcg agcgtgccga
     2881 cctcgtcgtc cgtctcgacg cgcgcgcgcg ccgtcaggtc gcccccgccg agctttgagg
     2941 ccgagacggc gaggctcctc aagggcttcg tgaagcggcc gacgccccag taggccagga
     3001 ggctcgacgc gagcagcgtg agcgcccacg tcgccgtaag caccagcacg gcgcggccgg
     3061 ccggcgtgtt ctcgggcgca ggcacgccca ctgcgacgcc ccagcccgaa ggctccgagc
     3121 gcgtcacgct cgtcacgcgc ctcaccccgt cgctccagag ctgcggctct atctcggccg
     3181 ggagcttttc cgggacgagc ggcgcggccc cttcacccgc cgagacggcg cgaccctgcg
     3241 ggtcgaagac ggagactgtg gcgtgagcgc ccgtcggggt gcggcggcgc aggcgcgcgt
     3301 agagcgtgcg cgctgactcg gccgagagac tctgcccgcc cctcgcctcc gaagggtgcg
     3361 actcggccca ggcttcgagg gcggcggcgg cggcctcggc ctcgatgcgg gcgatggttg
     3421 cggactggtc gttgaggctg cgctggtact tatgtagctg catgaggccg acgatgagca
     3481 gaggcaggga cagcacggcc agcatcgtca tgagcttggc gcgcacgtca agggcgcttc
     3541 tcttctcgcg tctcgtcaca gctacggctc gcccttccgg cccgcgcctc ccctccggcg
     3601 cctgcgcggc ggcggccaaa cgggctcgcg cgtctcgacg acgggccgga ggctgctcgc
     3661 atagaccagg atggtctgcg ctatcagctc gtcgaggaag tcgtttgacc tccgcagcgc
     3721 ctcgcgcagc tcgcgaccgc ccgcgtcgcc cgcccccggc gcctcgcgcc agagaaaatc
     3781 gttcaaagcg ccgcgtaaaa gcatcaactc gcgtgccact tcgtcgagca gcgcgccctg
     3841 ctggaagcgg gcctgagcga agggccgcag gcgcttcgcc gcctcgattg tctcggcgta
     3901 gggcgcacga ctgtcgagca ggtaggccag ttcgtcgagc aggtcaggca agtgcgcaac
     3961 aagctcgcgg aaagagaggg cgcgtgcgtg atccgtgcgg cggtcggcgt agagcctgtc
     4021 aaccagctcg cgcgccaggg aatcgaggtt ctcgcggaag agtgctgcga aaagcatcag
     4081 agcaataagc cgtcagcggt cggctatcag ctttgcggta tttatcttaa agccccggcc
     4141 ttaatggtaa gcataaatcg ccgcagagct gatagccgac cgcgattgct gacagctatt
     4201 tcttcgtcag ttgattgagg agctggacga gctggtcgaa gtcaatgggc tttgtgacgt
     4261 actcgttgca gccggcggcg agcgcctcgg cgtggaaatc ggccgagtcg tgggccgaga
     4321 cggcgacgat cgggactttc ccgagccctt cgcgctgtcg tatctggcgc gtggccgtca
     4381 ggccgtcgag catcggcagg ctcaagtcca taaggattat gtccgggcgc aagctctcgg
     4441 ccatctcgat ggcctggcgg ccgttgacgg cctcgaccac ctcgtagccg ctcatttcga
     4501 gtaacctgcg catcatgaag cggttatcct cgaaatcttc gacgacgagg acgaccgggc
     4561 gcgcgtcact ctttgactcc atcccgctcc tttcccttcc cgacccgtcc aagcttagga
     4621 cactcgcggc gagatcgccg acgtatcact agcaaacagt ccactttttt gttaagatgc
     4681 cgcatcgaaa cgcgacacaa aaacaaaaaa gtttgggttt aatccataca tgccacaagg
     4741 cttagagccg ccttctgtgc aacgggcgtg ttcccggcgg aaggtcgagc ggacgttatg
     4801 aagccgctaa taacggggtc gcaagacgaa gagacgcttc gcacgctcgg gagcgcatcc
     4861 gtgcagattg tgcacgatct caaaaatcag ctaaacggtc tcaaactcta tgccacgttc
     4921 ctgcgcaaga ggatggagaa gagcgaccgg ccgcaggacg agctcgatac catctcgaag
     4981 ctcatcggcg gcctggagcg cgcggccggc gacatgacgc tgctggtgcg ctacggccgc
     5041 ccgcttgagc ttcgcaggca gccgcgcaca gacctcgccc ggctggtcga agcggcgacc
     5101 gacggcgcgg ccctgacggt cgagcccggc gagtacgagg gcgagttcga cgcgccgctt
     5161 ttgtccgaag cgctcacgaa catctcggcc ggcagtaacg gcgcgggcgc cgaagccgtt
     5221 caggtccttc tcaggcgcga gccggcgggc ggcggcgcgg ccgcggccgt catcgagtgg
     5281 cgcggcgtcg cggccgccca tgacggagac gctttcaaga acctcgccgg aggccagggc
     5341 ctccggctcg cgctcgcggc caagataata cgcgcgcacg ggggcgaagc ggcgcaggac
     5401 ggcgcggtgc tccacgcgag gctcccgctc caagcttaaa gcgcccggga caagtttctg
     5461 agctcataga ccgaaggccc tctctcccgt aaaccccgac acggaggacg acaagtggaa
     5521 cgcaaggatg tacgaatact ggtgattgac gacgagccga tgatggccga ctcgctcaag
     5581 cagaatctgg cagaggaggg ctacacggtt gacacggcgt cgcacggcgc gcaggccgtc
     5641 gagatgttcg acggcagcgg ccaccacctg gccatttgcg acctgcaact ccccgaccgc
     5701 ggcatggacg ggatggacgt gctgcgccac atcaaagaca cgcgcccctc gaccgaggtc
     5761 atcgtcgtca ccggctacgg cacggtagag cgcgcggtcg aggcgacgaa ggccggcgcc
     5821 ttctggttcc tcgagaagcc cttcgacttc gacgtgctga tatcgctcgt cgaacgcgcg
     5881 ctcgaacgcc acgagctgat gaccgagacc gagacgatgc gccgccagct ctcgacgcgc
     5941 accgagtact tcaacatcat cggcgcgtcg aaacagatgc agaccatcta cgagacgata
     6001 gagtcggtgg cgaagtcgga cgccaacgtc ctcatcgtcg gcgagtcagg cacgggcaag
     6061 gagctcatag ccaacgccat ccactacaac tccctgcggg caaagaagcc cttcatcaag
     6121 gtcaactgcg ccgcgctccc gaaggagcta atcgagtcgg agctcttcgg ccacaccaag
     6181 ggcgccttca ccggcgcgca cgccgagaag gacggcctca tacagcacgc cgagggcggc
     6241 tcgctcatgc tcgacgagat tgccgagatg cctgtcgaat tgcagcccaa gctcctgcgc
     6301 gtccttcagg agcgcagcta ccgcaagcta ggctcggaga agacctaccc cgttgacttc
     6361 cgcctcatct cctcgacgaa ccggctgccg gccgacgcca tacgagacgg cctgctccgg
     6421 gacgacctct tctaccgaat ctcgaccatc acgattcacg tcccgcccct gcgcgagcga
     6481 agcgaggaca tacagctcct cgccgagcat ttcctgaaga tgtacgcgcg caagtaccag
     6541 cgctccatca acggcatctc gcagtcggcc taccagcggc tgttcgcgca cggctggccc
     6601 ggcaacgtcc gcgagctcca gaacgtgatg gagcgcgcag tcctcctcgc caagggcggg
     6661 aagatagagc ccgtcgacct gcccttcgac aacggctcgc tgcccgagaa gaacgcgcag
     6721 gggcagggct gggacgtgcc gcccaacatg acgctcgagg agatagagaa gctcgtcatc
     6781 gagcgcacct tgcagcgcac gggcggcaac aagcaggcgg cggcgaatct gctcggcatc
     6841 taccgcccgc gcctctactc gaagataaag aagtacaaga tagacatacc ggcgctgatg
     6901 acggcgtaag cccggaagtt aaagatagag ggccggcccg cgaatcacga cagattcgcg
     6961 ggccggctct ctaccttgaa acacggaatt actccgtctg gtaggttgcg acgctcgtgg
     7021 gcgtctcgaa gcagcggact ttatagacgc gcacgcggtc gtcgcctacg cgcgaggcga
     7081 cacgctcgag gatgtagcgc gccagattct cggccgacgg gttcagttcc tcgtcgaagg
     7141 gcggaagctc gttgatgtta cggtggtcga gatacgccac gacatcgtcg gccgcgtctt
     7201 tcagttctcc gaagtcaacg agcaggccga tgttgtcaag ctcgcggccg cgggcgtaaa
     7261 tctcgatcct gtaattgtgg ccgtgcaggt tctcgcactt gcccttgtag ccgcgcagtt
     7321 ggtgcgcgct cgaaaagttc cgctcgatca tcacctcgaa catgccgctc atacggcgga
     7381 ttatctcacc gcaggagcgt cctgctcaaa cacggcggcg gcctccgaga ggtcggaggt
     7441 tatgcggcag ggcggcaggc tctcgaggaa gaggcggccg taagcctgct tgcgcaggcg
     7501 cgggtctagc acggcgagca ggccgcggtc ggacgccgag cgtatcaggc ggcccacccc
     7561 ctgcttgagc gtaatgaccg cctgcgggat gctgtaggag tagaagctgg agccgccctg
     7621 atcctctatg aagcgctggc gcgcggccac cacggggtcg gtcgggacgg cgaagggcag
     7681 cttgtctatg atgacgcatg agagctggcg gccgcgcacg tcaacgccct gccagaagct
     7741 cgcggtggcg aagagcacgg cgttcggcgt cgtgcggaat ttttccagaa gccccgcctt
     7801 cgacgcgctc ccctgcacga agcaggggaa gtcaacctcg ggcgcgacgc gctcgtagag
     7861 ggcgcgcatc cccgagagcg aggtcgagag cacgaaggcg cggccgccgg agatttccag
     7921 tagctttatg acctcgcgcg cggcggcgtc cgcccactgc ggcgagcggg ggtcgggcat
     7981 ctgcggcggc aggtagagca ccgcctgctc ctcgtagttg tagcccgagg gcgcgacgag
     8041 ttcgtccgtc ttcgcggcga cggcgttgcc atcttcctcg tcactatccg cgaggccgag
     8101 cctgcgcctt atgaagtcga agcggccggc gctcgcgagc gtggccgagg tgagcacgac
     8161 cgtctcgacg cgctcgaaca gcttgtcttg cagcagggtg gacacgtcaa tcggcgacgc
     8221 gcgcaggaag aggccgcgcc cccgccgctc ggcccaatag acgtagcggc ggtcgtcgcc
     8281 cgcgacgatg aactc
//
LOCUS       DASPKR010000530         3223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_468208, whole genome shotgun sequence.
ACCESSION   DASPKR010000530 DASPKR010000000
VERSION     DASPKR010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3223)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_468208"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1190)
                     /locus_tag="VD968_14255"
     CDS             complement(<1..1190)
                     /locus_tag="VD968_14255"
                     /inference="COORDINATES: protein motif:HMM:NF015019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0009678 - diphosphate hydrolysis-driven
                     proton transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proton-translocating pyrophosphatase"
                     /protein_id="HYE15603.1"
                     /translation="MLLFSLVGIAGSYGVAWFGIRVNTFANSRTAFASLEGRPYPIYA
                     IPLKAGMSIGMMLISVELFIMLCILLFVPRDYAGPCFIGFAIGESLGAAALRIAGGIF
                     TKIADIGSDLMKIVFKIKEDDARNPGVIADCTGDNAGDSVGPSADGFETYGVTGVALI
                     TFILLAVPSDVVKVQLLVWIFIMRVMMVVASAFAYFVNEAVAKARYGRAERMNFEAPL
                     TSLVWVTSVISVVLTYVVSYLMIPNLGGNPTLWWKLATIITCGTLAGAIIPELVKVFT
                     STESGHVKEVVTSSREGGASLNILSGLVAGNFSAFWLGMSIVALMTISYFFTTVGAGD
                     GLGVGELMVSPLAAPVFGFGLVAFGFLGMGPVTIAVDSYGPVTDNAQSVYELSLIEQV
                     PNVE"
     gene            complement(1242..1712)
                     /locus_tag="VD968_14260"
     CDS             complement(1242..1712)
                     /locus_tag="VD968_14260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15604.1"
                     /translation="MSTTLLLTSVISLSAIALLISARARSLALRLGATAAGLIACASP
                     LMAQAHGAAKGSTGGGTHGGGEANLVLPDLSSVEFFGTNGHTLLLVGLGVSLLGVVFG
                     LVIYVQLKNLPVHRAMREISELIYATCKTYLTTQGKFILLLWVFIAVIMIAYFG"
     gene            complement(1932..2474)
                     /locus_tag="VD968_14265"
     CDS             complement(1932..2474)
                     /locus_tag="VD968_14265"
                     /EC_number="5.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase family protein"
                     /protein_id="HYE15605.1"
                     /translation="MGTHRRLAITLAASVAVFAAAAAAARAQGAPPTVVIVVRHAEKA
                     AVEGSDPPLSEAGAKRAQRLVVVAEDAGVEAIYTTQFKRTRDTAQPAADRLKVPVTAV
                     EVTRENINSHPASLAKEILSKHKGKSVLVVGHSNTTTMIVEALSGRKVPALDDATDFD
                     ALFVVVLPDAGAPRLVKGKY"
     gene            complement(2493..>3223)
                     /locus_tag="VD968_14270"
     CDS             complement(2493..>3223)
                     /locus_tag="VD968_14270"
                     /inference="COORDINATES: protein motif:HMM:NF025099.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carbon starvation CstA 5TM domain-containing
                     protein"
                     /protein_id="HYE15606.1"
                     /translation="ESHIKPVGYGGMLAEGFVALIALVTIMIVAQGDLKPGTAAGTIY
                     GNGIGRFLSLVIGEQNLAFATTFGAMAFSTFVFDTLDVCTRLGRYIVQELFGWRGRAG
                     ALAGTLLTVALPFYFITFAPPNSWSKFWTLFGASNQLLAALTLLTITAWLYQARQRIG
                     YTLAPMLFVLAITLWALVSLVLGNLRATKIGSGQLDVELVNAVASAALVALALYLAVL
                     ALVRLRGDRRSGTLRPAHPAVSLE"
BASE COUNT          615 a          988 c         1122 g          498 t
ORIGIN      
        1 tcctcgacgt taggcacctg ctcgatgagc gaaagctcat agacggactg cgcgttgtcg
       61 gtcacggggc cgtaggagtc aacggcaatc gtcaccggcc ccatgccgag gaagccgaag
      121 gcgacgaggc cgaagccgaa gacgggcgcc gcgagcgggc tcaccatcag ctcgccgacg
      181 ccgaggccgt cgcccgcgcc caccgtcgtg aagaagtagg agatcgtcat cagcgcgacg
      241 atgctcatgc cgagccagaa ggcggagaag ttgccggcca cgagccccga aaggatgttc
      301 agggacgccc cgccctcgcg cgacgaggtg acgacctcct tgacgtggcc cgactcggtc
      361 gaggtgaaga ccttgaccaa ctctgggatg atggcgccgg cgagcgtgcc gcacgtgatg
      421 atggtcgcca gcttccacca tagcgtcggg ttgccgccga ggttggggat catcaggtac
      481 gagaccacgt aggtgagcac gaccgagatg acggacgtga cccagacgag agaggtcagg
      541 ggcgcctcga agttcatgcg ctcggcccgg ccgtagcggg ccttggcgac ggcctcgttg
      601 acgaagtagg cgaaggcgct cgccacgacc atcatgacgc gcatgatgaa aatccagacg
      661 aggagctgaa ccttgacgac gtcggacggg acggcgagca gtatgaaggt gatgagcgcg
      721 acgcccgtga cgccgtaggt ctcgaagccg tcggccgagg ggcctacgga gtcgcccgcg
      781 ttgtcgcccg tgcagtcggc gatgacgccg gggttgcgcg cgtcgtcctc cttaatcttg
      841 aagacgatct tcatcaggtc ggagccgatg tcggctatct tcgtgaagat gccgcccgcg
      901 atgcgcagcg ccgccgcgcc gagggattcg ccgatggcga agcctatgaa gcaggggcct
      961 gcgtagtcgc gcgggacgaa gagcagtatg cagagcatga tgaagagctc gaccgagatg
     1021 agcatcatgc cgatggacat gcccgccttc agggggatgg cgtagattgg gtacggcctg
     1081 ccctcgagcg aggcgaaggc cgtgcgcgag ttggcgaacg tgttgacgcg tatgccgaac
     1141 cacgcgacgc cgtagctgcc cgcgatgcct acgaggctga agagcagcac cgtgacgagg
     1201 aagacgggca ggcttatgtc ggggttcgtc gggggcgaga gttacccgaa gtaggctatc
     1261 atgatgacgg cgatgaagac ccagagcagc agtatgaact tgccctgcgt cgtcaggtag
     1321 gtcttgcagg tcgcgtatat cagctcggag atttcgcgca tggcgcggtg gacgggcagg
     1381 ttcttgagct gcacgtaaat cacgagcccg aagaccacgc cgagcaggct cacgcccagg
     1441 ccgacgagca gcagcgtgtg gccgttcgtg ccgaagaact cgaccgagga caaatccggg
     1501 agcacgaggt tggcctcgcc gccgccgtgg gtccccccgc ccgtcgagcc tttcgcggcg
     1561 ccgtgcgcct gagccatcag gggcgacgcg cacgctatga gcccggccgc tgtggcgccc
     1621 aagcgcaggg cgagtgagcg cgcgcgcgcc gagattaaaa gggcgattgc ggataggctg
     1681 attacagagg tcagcaaaag cgttgtggac aaggttaacc gattcctttc tgtttcctga
     1741 ctgaagaatg gcgtggcccg gcgcgcgagc gccccttcga ggcagaccgg gccgcgcgtg
     1801 agggcgcacg accgaagcct tcccccacag gccgcaacct gaggctcgct aaaagaggag
     1861 cattatgtcg gaaaaaggct cagaattcaa agcgcagaag gcggtcgggg gcggcgcccg
     1921 cccttcgatt ttcagtattt gcctttgacg aggcgggggg cgcccgcgtc ggggaggacg
     1981 acgacaaaaa gggcgtcgaa gtctgtagcg tcgtcgaggg cggggacctt cctgccgctc
     2041 agcgcctcta cgatcatcgt cgtcgtgttg ctgtgaccga cgacgaggac ggacttgccc
     2101 ttgtgcttcg agagaatttc tttggcgagc gacgcggggt gagaatttat gttctcgcgc
     2161 gtgacctcga ccgcggtgac ggggactttg aggcggtcgg cggcgggctg cgccgtgtcg
     2221 cgagtgcgct tgaactgggt ggtgtagatt gcctcgacgc ccgcgtcttc ggccacgacc
     2281 acgagcctct gcgcgcgttt cgcgccggct tcgctcaaag gcgggtcgct gccctcgacc
     2341 gcggccttct cggcgtggcg cacgacgatg acgacggtcg gcggcgcgcc ctgcgcccgc
     2401 gcggccgcgg ccgcggccgc gaagacggcg actgaggccg ccagcgtgat tgcgagtctt
     2461 ctgtgcgtcc ccatgttacc cctctgtaag aactattcca ggctgacggc cgggtgggcg
     2521 ggcctgagcg tcccgctccg gcggtcgccg cgcagacgca cgagcgccag cacggcgagg
     2581 tagagggcca gcgccacgag cgcggccgac gccacggcgt tgacgagttc aacgtctaac
     2641 tgccccgagc ctatcttcgt cgcgcgcagg ttgcccaaga cgagcgagac cagagcccag
     2701 agcgtaatcg ccaacacgaa gagcatcggc gcgagcgtgt agcctatgcg ctgccgagcc
     2761 tggtagagcc acgccgttat cgtcaggagc gtgagcgcag cgagaagctg gttcgacgcg
     2821 ccgaaaagcg tccagaattt agaccacgag ttcggcggcg cgaacgtgat gaagtagaac
     2881 ggcagcgcca ccgtcaaaag cgtccccgcc agcgccccgg cccggccccg ccagccgaaa
     2941 agctcctgca cgatgtagcg gccgagccga gtgcaaacgt ccagcgtgtc gaagacgaag
     3001 gtcgagaacg ccatcgcgcc gaaggtggtg gcgaaggcaa ggttctgctc gccaatgacg
     3061 agcgagagga accgcccgat gccgttgccg taaatcgtcc cggccgccgt gccgggcttc
     3121 aagtcgccct gcgccacgat cattatcgtc acgagagcga ttaaagcgac gaagccctcc
     3181 gcgagcatcc cgccgtagcc cacgggcttt atgtgcgact cgc
//
LOCUS       DASPKR010000531         2274 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_856208, whole genome shotgun sequence.
ACCESSION   DASPKR010000531 DASPKR010000000
VERSION     DASPKR010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_856208"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1498)
                     /gene="pruA"
                     /locus_tag="VD968_14275"
     CDS             complement(<1..1498)
                     /gene="pruA"
                     /locus_tag="VD968_14275"
                     /EC_number="1.2.1.88"
                     /inference="COORDINATES: protein motif:HMM:NF002852.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006562 - proline catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamate gamma-semialdehyde dehydrogenase"
                     /protein_id="HYE15607.1"
                     /translation="MQQMKHDEFRNEPFTDFTKEENARAMREAIERVRGELGREYPLV
                     IGGERVETGDLLESLNPANKTQVVGRFHKATKELARAAVERADEVFKTWSRTLPQQRA
                     DLLFRVAALLRERKHYFSAWMIHEVAKTWPEADGDTAEAIDFCEFYAREMLRYAGEQP
                     LTRIEGEDNRLTYIPLGVGVVIPPWNFPLAIMAGMTVASVVTGNTVVLKPSSDAPAIA
                     YKFFELLEEAGMPPGVVNFMVGAGSEVGDVIVDHPRTRYVAFTGSKEIGLRINERAAK
                     PQEGQIWIKRVVAEMGGKDAIIVDSDTDLDDAATGVVASAFGFQGQKCSACSRAIIHQ
                     DVYDEVLGKIVERTAKIKVGDPTEPTATMSAVINNKAFKTITEYIEKGVADGGRLIAG
                     GGSDGEQGFFIEPTVIADVKPGDRIEQEEIFGPVLACIKAADFDEALRIANDTEYGLT
                     GAIYTNDPEKLERARREFHVGNLYLNRKCTGALVGVHPFGGFNMSGTDS"
     gene            complement(1659..2174)
                     /gene="def"
                     /locus_tag="VD968_14280"
     CDS             complement(1659..2174)
                     /gene="def"
                     /locus_tag="VD968_14280"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: protein motif:HMM:NF001159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HYE15608.1"
                     /translation="MAILDIVKYGDPVLERPGDPVTEFDDELKRLVEDMFETMYSAHG
                     VGLAAPQVGVSKRLFVMDCSGGDDPSARIAIINPQVVSVEGEQTGDEGCLSFPGIFFQ
                     VRRDLRAVVRAHDVNGEEFEYDGLELEARCMLHETDHCDGIVFIDRTTALKRELIKRK
                     IKRLRTQGRWV"
BASE COUNT          356 a          727 c          743 g          448 t
ORIGIN      
        1 tcgagtcggt gccgctcatg ttgaagccgc cgaaggggtg gacgccgacg agcgcgcccg
       61 tgcacttgcg gttgaggtag aggttgccga cgtggaactc gcggcgcgcg cgctccagct
      121 tctccgggtc gttcgtatag atggcgccgg tcaggccgta ctccgtatcg ttcgctatcc
      181 tgagcgcctc gtcgaagtct gcggccttga tgcatgccag gacggggccg aatatctcct
      241 cctgctcgat gcggtcgccg ggtttcacgt cggcgatgac ggtgggctcg atgaagaagc
      301 cctgctcgcc gtcggagccg ccgcccgcga tgaggcgccc gccgtcggcc acgcccttct
      361 cgatgtactc ggtgatggtc ttgaaagcct tgttgttgat gacggcgctc atcgttgccg
      421 tcggctccgt cgggtcgcct acctttatct tcgcggtgcg ctcgacgatc ttgccgagca
      481 cctcgtcgta aacgtcctgg tggatgatgg cgcgcgagca ggccgagcac ttctgcccct
      541 ggaagccgaa ggctgaggcg accactcccg tagccgcgtc gtcgaggtcg gtgtcagagt
      601 caacaatgat cgcgtccttg ccgcccatct cggcgacgac gcgcttgatc cagatttgac
      661 cctcctgcgg cttggccgcg cgctcgttga tgcgaaggcc gatttccttc gagccggtga
      721 acgccacgta gcgcgtgcgc gggtggtcaa ctatcacgtc gccgacctcg gagcctgcgc
      781 ccaccatgaa gttgacgacg ccgggcggca tcccggcctc ttccagaagc tcgaagaact
      841 tgtaggcgat ggcgggcgcg tccgaggagg gcttgagcac gacggtgttg cccgtgacga
      901 ccgaggcgac cgtcatgccg gccatgatcg ctagcgggaa gttccagggc gggatgacga
      961 cgccgacgcc gagcgggatg taggtgaggc ggttgtcctc gccctcgatg cgcgtcaggg
     1021 gctgctcgcc cgcgtagcgc agcatctcgc gcgcgtagaa ctcacagaag tctatggcct
     1081 cggccgtgtc gccgtcggcc tctggccacg tctttgcgac ctcgtgaatc atccacgccg
     1141 agaagtagtg cttgcgctcg cgaaggagcg cggcgactcg gaagaggagg tctgcgcgct
     1201 gctgcgggag cgtgcggctc caggtcttga agacctcgtc ggcgcgctcg accgcggcgc
     1261 gcgcaagctc cttcgtcgcc ttgtggaagc ggccgactac ctgcgtcttg ttcgcggggt
     1321 tgaggctttc gagcaggtcg cccgtctcga cgcgctcgcc gcctatgacg agcgggtatt
     1381 cgcgcccgag ctcgcccctg acgcgctcga tggcctcgcg catcgcgcgc gcgttctctt
     1441 ccttagtaaa gtctgtgaaa ggctcgttgc ggaattcgtc atgcttcatc tgctgcataa
     1501 gtcggctcct cggggtgaaa ttatgaagtt attttggagt gatgctatca cagcgggaaa
     1561 cggtacggcg agccggccga cggccgaccg gaagagcgaa gagggctgac gaccgtcgcg
     1621 acggtcgtca gccctcttct tttgagcccg aaaattcctc agacccagcg gccctgcgtg
     1681 cggagccttt ttatcttgcg cttgatcagc tcgcgtttga gcgccgtagt gcggtcaatg
     1741 aagacgatgc cgtcgcagtg gtcggtctcg tgcagcatgc agcgggcttc gagttcgagg
     1801 ccgtcgtact cgaactcctc gccgttcacg tcgtgcgcgc ggacgacggc gcgcaggtcg
     1861 cgcctgacct ggaagaagat gccagggaag gagaggcatc cctcgtcgcc cgtctgctcg
     1921 ccctcgacgc tgacgacctg cgggttgatg atggcgatgc gcgccgacgg gtcgtcgccg
     1981 cccgagcagt ccatcacgaa gagccgcttg gagacgccca cctgcggggc ggccagcccc
     2041 acgccgtgcg ccgagtacat cgtctcgaac atgtcctcga cgagccgctt gagctcgtcg
     2101 tcgaactccg tcacggggtc gcccggccgc tcaagcaccg ggtcgccgta cttcacaatg
     2161 tccaaaatcg ccatcttaaa attcccgaaa ccgtcccgag tccgaagccc tgaagggcct
     2221 gttttcgccc gtatttcgat gcttattcta cggtaaaagc tgcctccggg ccag
//
LOCUS       DASPKR010000532         2200 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1503237, whole genome shotgun sequence.
ACCESSION   DASPKR010000532 DASPKR010000000
VERSION     DASPKR010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2200)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1503237"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..565)
                     /locus_tag="VD968_14285"
     CDS             complement(<1..565)
                     /locus_tag="VD968_14285"
                     /inference="COORDINATES: protein motif:HMM:NF014585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HYE15609.1"
                     /translation="MRRRKSFDPTTLEIYRALYTSVAEEMGLALRRTAHSPNIKERRD
                     YSCAVFDSRGRVIAQGDHMPVHLGSMPMAVAAALGESAPGPGDVIALNDPFAGGTHLP
                     DVTLVSGVFLKPSDKHAVFYVANRAHHADIGGATPGSMGVASDVYGEGLRIPPVRLVR
                     GGRVNEDVMRLLLANVRVERERRADFEA"
     gene            complement(562..>2200)
                     /locus_tag="VD968_14290"
     CDS             complement(562..>2200)
                     /locus_tag="VD968_14290"
                     /inference="COORDINATES: protein motif:HMM:NF014071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HYE15610.1"
                     /translation="GGEVLEPLEDEEIEKLARKLRRARVEAVAVCLLFSFAHPEHERR
                     VARAVATALPGVPVSASHEILPEYREFERTSTVVINAYLQPLMGAYLGRLGSRAGAGR
                     LSVMQSSGGSISARAAAREPVRTILSGPAGGVVGATHAALAAGARDIITFDMGGTSTD
                     VALCAGGRLALTNEASVAGLPVAIPVLDIHTVGAGGGSVARVDAGGSLRVGPESAGSD
                     PGPACYGRSSLPTVTDANLVLGRFGGADLLGGDFRLDESRAVSALEALAREMSGAGGR
                     AVSAVEAALGVVRVVNAGMERALRAVSVERGHDPRAFTLVSFGGAGGLHAVELARALR
                     ARSVLVPRSPGALSAAGALRADVVKSLSRTVMLEVGEGATAAARIERVFEELEREARG
                     ALAREGFREGRQRHERSVAARYKGQSFELEIPWAGGRSLVRRFHSAHEARYGYAQAAR
                     SIEVVSARLRSSGLVERPKGERVRAGRARKVVPDGTALVHFDGGPRRVAVYAREGLPA
                     GAVLRSPCVVTEYSSTTLVPPGARARVDARGNLFIEP"
BASE COUNT          315 a          820 c          783 g          282 t
ORIGIN      
        1 gcgcctcgaa gtctgcgcgc cgctcgcgct ctacgcgcac gttcgccaac agcaggcgca
       61 ttacgtcttc gttcacccgg ccgccgcgca cgagccggac gggcgggatt ctcagcccct
      121 ccccgtacac gtccgacgcc acccccattg agcccggcgt cgcgccgccg atgtcggcgt
      181 ggtgcgcgcg gttcgcgacg tagaagacgg cgtgcttatc tgagggctta aggaagacgc
      241 cggagacgag cgtcacgtcg ggcaggtgcg tgccgcccgc gaaggggtcg ttgagcgcga
      301 ttacgtcgcc ggggccgggc gccgactcgc cgagcgccgc cgcgacggcc ataggcatcg
      361 agcccaggtg gacgggcatg tggtcgccct gcgcgatgac gcggccgcgc gagtcgaaga
      421 cggcgcagga gtagtcgcgc cgctccttta tgttcggcga gtgcgctgtg cggcggagcg
      481 ccaagcccat ctcctccgcg acagaggtgt agagcgcgcg gtagatttcc agcgtcgtcg
      541 ggtcgaaact cttccgtctt ctcatggctc gataaacagg ttgccgcgag cgtcaacgcg
      601 cgcgcgggcg cccggcggga cgagcgtcgt cgaggagtat tccgtgacga cgcagggcga
      661 gcggagcacg gcgcccgccg gcagcccttc gcgcgcatag acggcgacgc ggcgcggccc
      721 gccgtcgaag tggacgaggg cggtgccgtc cggaacaacc ttgcgcgcgc ggcccgcgcg
      781 cacgcgctcg cccttcgggc gttcgaccag ccccgaggag cgcaggcgcg cgctcacgac
      841 ctcgattgac cgggcggcct gcgcgtagcc gtagcgcgcc tcgtgggccg agtggaagcg
      901 gcgcacgagc gagcggccgc cggcccacgg gatttcaagc tcgaaggact ggcctttgta
      961 gcgcgccgcg acgctcctct cgtggcgctg ccgcccttca cggaagccct cgcgcgcgag
     1021 cgccccgcgc gcctcgcgct caagctcctc gaagacccgc tctatccgcg ccgcagccgt
     1081 cgcgccctcc ccgacttcga gcatgacggt gcggctcaaa ctcttcacca cgtcggcgcg
     1141 cagggcgccc gccgccgaga gcgcgccggg gctgcgtggg acgagcacgc ttcgcgccct
     1201 aagagcgcgc gcgagctcga cggcgtgcag gccgcccgcg ccgccgaagc tcacgagcgt
     1261 gaacgcgcgc gggtcgtgac cgcgctcgac ggagacggcg cgcaaggccc tctccatccc
     1321 cgcgttgacg acgcgcacga cgccgagtgc cgcctccacg gccgagaccg cgcgcccccc
     1381 cgccccgctc atctcccgcg cgagcgcttc gagcgccgag acggcgcgac tttcatcaag
     1441 ccggaagtcg ccgcccaaaa ggtctgcgcc gccgaagcgg ccgagcacga ggttcgcgtc
     1501 cgtcacggtc ggcagactag agcggccgta gcacgcgggg ccggggtctg acccggcgga
     1561 ctccggcccg acgcgaaggc tcccgcccgc gtccacgcgc gccacagacc ctcccccggc
     1621 gcccacggtg tgtatgtcta agacggggat ggcgaccggc aggcccgcga cgctcgcctc
     1681 gttcgtcaag gcaagccgcc cgccagcaca cagcgcaacg tccgtggaag tcccgcccat
     1741 gtcgaacgtg ataatgtcgc gcgcgcccgc cgcgagcgcc gcgtgtgtgg ccccgacgac
     1801 tccgcccgcc gggcctgaaa gtatcgtccg cacgggctcg cgcgccgccg cgcgcgccga
     1861 gatgctcccg cccgaagact gcatgacgct caggcgcccc gcgcccgcgc gcgagccgag
     1921 gcggccgagg taggcgccca tcagcggttg caggtatgcg ttgatgacga ccgtcgaggt
     1981 gcgctcgaac tcgcggtact cggggaggat ttcgtgggag gcggagacgg ggacgccggg
     2041 cagcgccgta gcgacggcgc gcgcgacgcg cctctcgtgc tcggggtggg cgaaggagaa
     2101 gagcaggcag acggcgaccg cctcgacgcg cgcgcgcctg agcttgcggg cgagcttctc
     2161 tatctcttcg tcttccagcg gctcgaggac ttccccgccc
//
LOCUS       DASPKR010000533        12451 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_724123, whole genome shotgun sequence.
ACCESSION   DASPKR010000533 DASPKR010000000
VERSION     DASPKR010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12451)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12451
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_724123"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..1371)
                     /locus_tag="VD968_14295"
     CDS             complement(166..1371)
                     /locus_tag="VD968_14295"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE15611.1"
                     /translation="MTLRRALLAPAAAAALMLSGLAAAPAGAQSGVRPKPTPTPSAQD
                     EETETVFTEEVRIPVFAYDEAGRFDPRLEVDDVLVVEDGVPQQVQSVRRVPASVLLLL
                     GTGYDQWPVVRPAVTRSVALSVLANLRDGDQVAAVQFGGKPQLLQGWTGDRELVARTL
                     RAKLATAPGSNLSAALRRAVEVLQAQPVGNRHLVLVTDGIDTAGSNEYDAAVKALVAA
                     QATLHVVSFSEVGLAELQGIRKQPKESPGMAQSRADIAVVGIDPTRPPGARVGGAGIN
                     PRTTGGGIVFDPALKRRRKSAEREMRRGETRLKTLTEETGGSLLAPDTMDDMVARGAD
                     VAAEIGAQYVVTYKPKRPLHAAPAAQYRRIHVGARRIGLTLRARRGYVVGTMRQPVAP
                     DAEERKQNP"
     gene            complement(1621..2631)
                     /gene="pta"
                     /locus_tag="VD968_14300"
     CDS             complement(1621..2631)
                     /gene="pta"
                     /locus_tag="VD968_14300"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008959 - phosphate acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HYE15612.1"
                     /translation="MSILERIRRKAAEDPQHIVLPEGEDPRTAAAAAIVARERLARLT
                     LLGDEEKVRAAARAAGADLGGVAVIDHRRAPDFEKVASLYHELRRAKGLMPDEARIAV
                     QDPLYYGNLLVREGRADGSVAGATNTTAHTVRAALHCIGIRPGFKIVSSFFVMVLPDA
                     RFGADGAMIYADCGVVIEPSAPELAEIAIASAESCRALLGAEPRVAMLSFSTKGSAKH
                     KLIDKVVEATRTVRARLPELEIDGELQADAALVPSVGESKAPGSTVAGRANVLIFPDL
                     QAGNIAYKLTERLAGATAIGPVLQGLDKPANDLSRGCKAEDIVDAVAITAVQAQARKA
                     AR"
     gene            complement(2762..3319)
                     /locus_tag="VD968_14305"
     CDS             complement(2762..3319)
                     /locus_tag="VD968_14305"
                     /inference="COORDINATES: protein motif:HMM:NF021577.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DICT sensory domain-containing protein"
                     /protein_id="HYE15613.1"
                     /translation="MKEFSMYDLALEAAGSGAEDLGAVTHVSRRDFDERAAFRFSAQA
                     PCLEYISLLIENALVLRTHRGGRVYAGFQRLSRMEGVVDRYMRIADVSERVYVFGEPD
                     WKPPRHPNMRVIELPALSRLAREWFVVADSPSLRVALVGVDEGGSAAPDLEGRTFRAF
                     KTHDPATVQRLASAAEDLIDHSLNS"
     gene            complement(3441..4856)
                     /gene="mpl"
                     /locus_tag="VD968_14310"
     CDS             complement(3441..4856)
                     /gene="mpl"
                     /locus_tag="VD968_14310"
                     /EC_number="6.3.2.45"
                     /inference="COORDINATES: protein motif:HMM:TIGR01081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HYE15614.1"
                     /translation="MHYHLIGICGTAMASLAGMLQARGHRVTGSDENVYPPMSTMLGG
                     LGIPVAQGYSAANLTPAPDCVVIGNALSRGNPEVEETLNRRLTYRSQAEVVKEEFIRG
                     RRSLVVAGTHGKTTTTSIAAWVIDRGGLAPSFLVGGVVQNFGTSFRVTDSDYFVIEGD
                     EYDTAYFDKGPKFMHYLPELAVVGNIEFDHADIYADLDAVKTAFRRLINLVPSNGRLI
                     AGWDSPAVREVVEEMGSRLHTQIETYGTREGARWRAVGVDYESGELTRFRVEREGREW
                     GEFETPLIGDFNVRNCLAVIVAADAWGVPAGRIAEALKSFRSVQRRMQVRGEAAGVTV
                     IDDFAHHPTAVRETLRALRDKYKGRRLVAVFEPRSATSRLAVFQDEYRDAFDQSDYVV
                     LSTVFAREKGSVYGRLLDTDELTRQIAARGRTALCLDGADAIVEHLAPVLREGDVVAV
                     MSNGGFGGIHDKLLDALRGRG"
     gene            complement(4879..6228)
                     /locus_tag="VD968_14315"
     CDS             complement(4879..6228)
                     /locus_tag="VD968_14315"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE15615.1"
                     /translation="MQGITPTRLGDIYVRRESDIVKVRERVRRLAREMGFDSTTQIKI
                     TTAISELTRNIYEYAKSGAITLSLAERGSSLTGLQITARDDGPGIDEAKLRSIVRGSY
                     RSPSGLGVGLIGTRRLMDEFDIQSGPGEGTRVTVVKWLPPAEAAEARARKEELRAFVA
                     TDEGDSALEELARQNRDLVQILGELEEKREQLERLNRQLEASNRELNEANAKLRELSE
                     LKEEFLALTTHDLRSPLTVISGVINFFTSGRLGEMTPEQKNMVAMMERNTQNLIELVN
                     DLLDASKLESGTMRLDTASIELPGLIEELREQMQPLAQEKEITLGESLPEDLPPLRAD
                     RAKLRRILVNLLSNAIKFTPRGGRVEVAAAREGDFARVSVTDTGVGIPQEDAGRLFDK
                     YAQARSRATRSEKGTGLGLYITRQLVELHGGQISVRSEVGKGSTFTFTIPVAGEGGG"
     gene            complement(6302..7348)
                     /locus_tag="VD968_14320"
     CDS             complement(6302..7348)
                     /locus_tag="VD968_14320"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE15616.1"
                     /translation="MRVFHSQQIKDEPQVGAARRAVHRHASRLGFGEDALAEIDIVVQ
                     EMGTNAVRYATGGGCLHWAETLAGAGLELFYCDKGPGIFDLERAVRDGVSTGGSLGTG
                     FGAMRRLLDEFDAYSTVRGTTRRLLTGRRTTFGTAILGRKWASPEREGDAARARRLSA
                     QLGVWSRPRPGEEVNGDAYFFAERGAVTLLAVVDGLGHGRGAHEASSAALDALSQWQG
                     EPLEDVIWGAHDALRATRGAVIGAFLVDAGRGSLHYAGVGNVEARVFNSPEPVRPVPS
                     NGTLGARLSNVRVWPHRWAEGTTLVLATDGLSASWDAAAYPGLVGHQPQLLAGVLLRD
                     FGRNSDDATVLVFR"
     gene            complement(7429..7830)
                     /locus_tag="VD968_14325"
     CDS             complement(7429..7830)
                     /locus_tag="VD968_14325"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma regulatory factor"
                     /protein_id="HYE15617.1"
                     /translation="MPSRSIALEHEHDIAVARGEARRMAAELGFRMIDQTRLATVASE
                     LARNVIKYARRGRMIAQPLAAGARGRAGLRLIFEDEGPGIADVDAAMRDGFSTGRGLG
                     KGLPGSKRLVDEFEIVSAVGRGTRVTVVRWL"
     gene            complement(7805..8239)
                     /locus_tag="VD968_14330"
     CDS             complement(7805..8239)
                     /locus_tag="VD968_14330"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HYE15618.1"
                     /translation="MDGQQRIPILKVGRVLIVPIQVDMDDQAVMHLQERILMELERTG
                     ARGVLIDISLLEMVDSFIGRVLSDIAAMARIMDARTVVVGMQPAVAITLVELGLELRG
                     VDTVLNVDEGIRLLRSEFGIDEEDDELSFGELSALAEQINRP"
     gene            complement(8260..9243)
                     /locus_tag="VD968_14335"
     CDS             complement(8260..9243)
                     /locus_tag="VD968_14335"
                     /inference="COORDINATES: protein motif:HMM:NF025719.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HYE15619.1"
                     /translation="MPDKDVSQRSEERRITALLSTRRDEILNLWIKERLEADEFRDEL
                     ISKKDLRDQSRQVIDMLAEAIPASGGADFEHPAFDELRAYLNEIAHGRAVKGYTPLEN
                     ATYILALRNVVNPLLAEELGGDAEALIPEMNYFTRLLDKMGIVMVETFIRSREEIIRQ
                     QRADMLELSTPVIKVWDKILTLPIIGTLDSRRAQMMMEALLQKVVETGSTIAILDITG
                     VRTMDTLVANHLIKTVTAARLMGARCILTGVSPAIAQTMVQLGIDLTQITTRAQMSDG
                     IKLALEMLGRTVVSTKALVKAQNGSAEGLLTTLKQTEQTITTGEKEKGRDS"
     gene            complement(9480..9941)
                     /locus_tag="VD968_14340"
     CDS             complement(9480..9941)
                     /locus_tag="VD968_14340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15620.1"
                     /translation="MLRFTRLLLAVSLPALLLSALSSAAAAQGNEKEGPAFVEYKGVR
                     IGMTADEARKKLGDPTDKGDTQDFYAFNDNESCQVFYDGQKKVFAVSVTYLGEKASAP
                     SAKAVLGSDVEAKPDGSMHRLVRYPKAGYWVSYTRTSGDSPMTVIAMQKIQ"
     gene            10182..11969
                     /locus_tag="VD968_14345"
     CDS             10182..11969
                     /locus_tag="VD968_14345"
                     /inference="COORDINATES: protein motif:HMM:NF019239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15621.1"
                     /translation="MKRTNVRVAAALLLALLCAGAARADDWVRARSKNFTLVSDAGES
                     KARRLAVELEQFRHVISLLFPNAQIETPVATTVYLFRSHESFRPFKPRHEGRVKENVG
                     GYFMATPDGNYITLTAAPRGAVGPEEIIFHEYEHFVMRNNLPRAPLWLNEGLAEFYST
                     FSPSDDGQKVQLGAPIARHIAVLRDARGRLPLAELLAVDQKSPHYNEGSKAGLFYAKS
                     WALVHYLMLGDDARRQSQFRQFIARTASDMTVEENFRQSFQADFRVIEKELDAYISRF
                     MFPVLTVTFNKQLDFSKDVETARLTEAESLRYLGDLLAHAGEAREAEKYLEKSLGLDP
                     GAAPARVSLAYVRLRQRRLGDAYKLLEEAVRLDPASYLARYHYANALAMGGRLEEAVA
                     AYREAARLNPAWPRAQSGLASALSALGRDEEAAAALKAAIALSPRDANLFRSLAYAQL
                     RLGQGGAAASNALLYLRKQGWRDDHAPYVFFAAYLGLTRSRQTPVAERLLGEATSKMN
                     AAEWPYPVLQYFRRELTAEQLVSAAGDDRDKLTEAHAYAGLSLSIAGEREAALPHLRW
                     VADNGNRNFVEYPLALAEIRRLEQARTTP"
     gene            complement(12052..>12451)
                     /locus_tag="VD968_14350"
     CDS             complement(12052..>12451)
                     /locus_tag="VD968_14350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE15622.1"
                     /translation="VGIGLITQRPGKLDQDVLSQCMTQIIMRIVNPIDQDTVAKSVEG
                     AGRQLLAELPALTKGQAVISGVGVNTPVMCRVRPRLTRHGGETFDAPAEWARWHTPEE
                     RQHREQDSAVLAAPPQKPDKKVEKIRGFQI"
BASE COUNT         1842 a         4183 c         4352 g         2074 t
ORIGIN      
        1 ggcctgaccc tgcgcgcccg ccgcggctac gtcgtcggca cgatgcgcca gcccgtcgcg
       61 cccgccgcgg aggagcggaa acagaaccca taacaaaaag ggagggccgg gagtttgatg
      121 agagacggcg tgtctctcat caaactcccg gccctccctt ttttgttatg ggttctgttt
      181 ccgctcttcc gcgtcgggcg cgacgggctg gcgcatcgtg ccgacgacgt agccgcggcg
      241 ggcgcgcagg gtcaggccga tgcggcgcgc gccgacgtgt atgcgccggt actgcgcggc
      301 gggcgcggcg tgaagcgggc gcttcggctt gtaggtgacg acgtactgcg cgcctatctc
      361 ggccgcaacg tccgcgccgc gcgccaccat gtcgtccatc gtgtcgggcg cgagaaggct
      421 cccgcccgtc tcttcggtca gagtcttaag gcgggtctcg ccgcggcgca tctcgcgctc
      481 ggcggacttg cgtcgccgct tgagcgccgg gtcgaatact atgcccccgc ccgtcgtgcg
      541 cgggttgatg ccggcgccgc cgacgcgcgc cccgggcggg cgcgtggggt caatcccgac
      601 gacggcgatg tcggcgcggc tctgcgccat gccgggcgac tctttgggct gcttccttat
      661 gccctgcagc tcggcgagcc cgacctcgga gaagctcacg acgtggagcg tcgcctgcgc
      721 ggcgacgagg gccttaacgg cggcgtcgta ctcgttcgag ccggccgtgt ctatgccgtc
      781 tgtgacgagc acgaggtggc ggttgccgac gggctgggcc tgcaagacct cgacggcgcg
      841 gcgcagcgcg gccgagaggt tcgaccccgg cgctgtcgcg agcttcgcgc gcagcgtgcg
      901 cgcgaccaac tcgcggtcgc ccgtccagcc ctgcaggagc tgcggcttgc cgccgaactg
      961 cacggccgcc acctggtcgc cgtcgcgcag gttcgcgagc acgctcaaag cgactgagcg
     1021 cgtgacggcc gggcgcacca ctggccactg gtcgtagccc gtgccgagaa gcagcagcac
     1081 gctcgcgggg acgcgccgca cgctctgcac ctgctgcggc acgccgtctt cgacgacgag
     1141 cacgtcgtca acttcgagcc gggggtcgaa gcgccctgcc tcgtcgtatg cgaagacggg
     1201 tatgcgaacc tcttcggtga agacggtctc ggtctcttcg tcctgcgcgg acggcgtcgg
     1261 agtcggcttc gggcgcacgc cgctctgcgc gccggccggg gcggcggcga ggccagaaag
     1321 catgagcgcc gctgcggcgg cgggcgcgag aagggcgcgt cttagagtca ttttgcggcc
     1381 tcggttgcgg gcgaaaatct tgaaggcttt cgtgtctcag atgctccgcg ggcgcgcgcg
     1441 agttcgcccg cgcgccctga cgtgattacc gcgcggcgcc tttttggttc ggccggggcc
     1501 acacgtttaa gagaaggcga ccttctcggc gtcgcggaag gggagtttga gggcggtctc
     1561 gcggccgaag agttgttcga gcgggtcttg cggcatgact gtctcagcct ccccgaacgt
     1621 tcagcgcgcg gccttgcggg cctgcgcctg cacggccgtt atggctacgg cgtcaacgat
     1681 gtcttcggcc ttgcagccgc gagagaggtc gttggccggc ttgtccaagc cctgaaggac
     1741 ggggccgatg gcggtcgcgc ccgcgagccg ctcggttagc ttgtaggcga tgttgccggc
     1801 ctgaaggtct gggaatatta ggacgttggc gcgaccggcg acggtcgagc ccggcgcctt
     1861 cgactcgccg accgagggga cgagcgcggc gtcggcctga agctcgccgt caatctcgag
     1921 ttcgggcagg cgcgcgcgca cggtgcgcgt cgcctccacg accttgtcaa tcagcttgtg
     1981 cttggcgctg cccttcgtcg agaaggagag catggcgacg cgcggctcgg cgcccaggag
     2041 cgcgcggcag ctctcggccg aggcgattgc tatctccgcg agctcgggcg cggagggctc
     2101 gatgacgacg ccgcagtctg cgtagatcat cgcgccgtcg gcgccgaagc gcgcgtcggg
     2161 caagaccatg acgaagaagc tggagactat cttgaagccg ggccggatgc ctatgcagtg
     2221 gagcgcggcg cgcacggtgt gcgccgtcgt gttcgtagcg cccgccaccg agccgtccgc
     2281 gcgcccctcg cgcacgagca ggttcccgta gtagaggggg tcttgcacgg cgatgcgcgc
     2341 ctcgtcgggc atcaggccct tcgcgcggcg cagctcgtgg tagagcgagg cgaccttctc
     2401 gaagtctggc gcgcggcggt ggtcaatcac ggcgacgccg cccaaatcag ccccggccgc
     2461 ccgcgccgcc gcgcgcacct tctcctcgtc gccgaggagc gtcaggcgcg cgagccgctc
     2521 ccgcgcgacg atggcggccg cggccgccgt gcgggggtct tcgccctcgg gcagcacgat
     2581 atgctgcggg tcttccgccg ccttccgcct tatccgttcg agtatgctca taggaaggga
     2641 agacagatag acaggagacg caagtcagaa aagagaggcg gcagacgcct cctgacttcc
     2701 gtattctgtc tcccgaattc ctttttaatg tagcacggcg gcgaggcggc cgagaagcgc
     2761 gtcaggagtt gagcgagtgg tctatgaggt cttctgctgc cgaggcgagg cgctggactg
     2821 tcgcggggtc gtgcgtcttg aaggcgcgga aggttctgcc ttcgaggtcg ggcgccgcgg
     2881 agcccccctc gtcaacgccg acgagcgcga cgcgaaggct cggcgagtcg gccacgacga
     2941 accactcgcg cgcgagcctt gagagcgcgg gcagctctat caccctcatg ttcgggtggc
     3001 ggggcggctt ccagtccggc tcgccgaaga catagacgcg ctctgacacg tcggctatgc
     3061 gcatgtagcg gtcaacgacg ccctccatgc gcgagagcct ctggaagccg gcatagacgc
     3121 gcccgccgcg gtgcgtccga agcaccagcg cgttctctat caggaggctt atgtactcga
     3181 ggcagggagc ctgtgcgctg aagcggaagg ccgcgcgctc gtcgaagtcc ctgcgtgata
     3241 cgtgcgtgac cgcgcccagg tcttcggccc cgctgccggc tgcctccagg gcgaggtcgt
     3301 acatcgagaa ctctttcatg gcggcacggg cgcgcggccg cggctgcgac gcccgcgaca
     3361 gttctagccc ctcaaagctt cggcggcatt acgaatgtct cgcgaaatgt ttgaggcggg
     3421 cggtcgcggc cgggcgacct ctagccccgg ccgcggagcg cgtcgagcag cttgtcgtgt
     3481 atgccgccga agcccccgtt cgacatgacg gccaccacgt cgccctcgcg cagcacgggg
     3541 gcgaggtgct cgactatcgc gtcggcgccg tcgaggcaga gcgccgtccg cccgcgcgcg
     3601 gctatctggc gcgtcaactc gtccgtgtcg aggagccggc cgtaaacgct gcccttctcg
     3661 cgcgcgaaga cggtggagag cacgacgtag tccgattggt caaaggcgtc gcggtactcg
     3721 tcctggaaga cggcgaggcg cgaggtcgcc gagcgcggct cgaagacggc gacgaggcgg
     3781 cggcccttgt acttgtcacg aagcgcgcgc agggtctcgc gcacggccgt cgggtggtgc
     3841 gcgaagtcgt ctatgacggt cacgcccgcg gcctcgccgc gaacctgcat gcgccgctgc
     3901 acgctgcgga aactcttgag cgcttcggct atgcgcccgg ccgggacgcc ccaggcgtcg
     3961 gcggcgacga tgacggcgag gcagttgcgc acgttgaagt cgcctatgag cggcgtctcg
     4021 aactcgcccc actcgcgccc ctcgcgctcg acgcggaagc gcgtcagctc gcccgactcg
     4081 taatcaaccc ccacggcgcg ccagcgcgcg ccctcgcgcg tgccgtaggt ctcgatctgc
     4141 gtgtgtaggc gcgagcccat ctcttcgacg acctcgcgca cggcggggct gtcccacccg
     4201 gcgatgagcc ggccgttgga cggcaccaga ttaatcagcc ggcggaaggc cgtcttgacg
     4261 gcgtcgaggt cggcgtagat gtctgcgtgg tcgaactcta tgttgcctac gacggccagc
     4321 tcgggcaggt agtgcatgaa cttcggcccc ttgtcgaagt aggccgtgtc gtactcgtcg
     4381 ccctcgatga cgaagtagtc gctgtcggtg acgcggaagc tggtgccgaa gttctgcacg
     4441 acgccgccga cgaggaacga gggggcgagc ccgcccctat caatcaccca cgcggcgatg
     4501 ctcgtcgtcg tcgtcttccc gtgcgtgccg gcgacgacga gcgagcggcg gccgcgtatg
     4561 aactcctcct tgacgacctc ggcctgcgag cggtaggtga gccgtcggtt cagagtctcc
     4621 tcgacctccg ggttcccgcg cgacagggcg ttgccgatga ctacgcagtc gggcgcgggc
     4681 gtgaggttcg cggccgagta gccttgagcc accggtatcc ccaggccccc cagcatcgtt
     4741 gacatcggcg gatagacgtt ctcgtccgag cccgtgaccc tgtggccccg cgcctgaagc
     4801 atccccgcca gcgatgccat cgccgtcccg cagattccga taaggtggta gtgcatagga
     4861 gagaatggca ccggcccgtc agcccccgcc ctcgcccgcg accgggatgg tgaaggtgaa
     4921 ggtcgagccc ttgccgactt cggagcggac gcttatctgg ccgccgtgaa gctcgacgag
     4981 ctggcgcgtg atgtagaggc cgaggcccgt ccccttttcg ctgcgcgtgg cgcgcgagcg
     5041 ggcctgcgcg tacttgtcga agagccggcc ggcgtcctcc tggggtatgc cgacgcccgt
     5101 gtcggtgacg gagacgcggg cgaagtcgcc ctcgcgcgcg gcagcaacct cgacgcgccc
     5161 gccgcgcggc gtgaacttga tggcgttcga caggaggttg acgagtatgc ggcgcagctt
     5221 ggcgcggtcg gcgcgaaggg gcggcaaatc ctcggggagc gactcgccca gggttatctc
     5281 cttctcctgc gcgagcggct gcatctgctc gcgcagctcc tcgatcaggc cggggagctc
     5341 gatggaggcg gtgtccaggc gcatcgtgcc ggactcgagc ttcgaggcgt cgagcaggtc
     5401 gttgacgagc tcgatgaggt tctgcgtgtt gcgctccatc atcgcgacca tgttcttctg
     5461 ctcgggcgtc atctcgccga ggcggcccga ggtgaagaag tttatgacgc cgctgataac
     5521 ggtcagcggt gagcgcaggt catgcgtggt gagcgctagg aactcttcct tcagctcgga
     5581 gagctcccgc agcttggcgt tggcctcgtt caattcgcgg ttgctggcct cgagctgacg
     5641 gttcaagcgc tcgagctgct cacgcttctc ctccagctcg ccgagtatct ggacgaggtc
     5701 gcggttctgc cgggccagct cttcgagagc ggagtcgccc tcgtcggtcg cgacaaaggc
     5761 tcgtagctcc tccttgcgcg cgcgcgcctc ggcggcctcc gcgggcggga gccacttgac
     5821 cacggtgacg cgggtgcctt cgccggggcc ggactgtatg tcgaactcgt ccatcaggcg
     5881 gcgcgtgccg atgaggccga cgccgagccc cgagggcgag cggtagctgc cgcgcactat
     5941 ggagcggagc ttcgcctcgt caatgccggg gccgtcgtcg cgcgcggtta tctgtaggcc
     6001 ggtgagcgaa gagccgcgct cggccaggga gagcgtgatt gcgcccgact tggcgtactc
     6061 gtatatgttg cgcgtcagct ccgatatggc cgtcgttatc tttatctgcg tcgtcgagtc
     6121 gaagcccatc tcgcgcgcca gccgccggac gcgctctcgc accttcacga tgtccgactc
     6181 gcgccggacg tatatgtcac cgagcctcgt cggggtgatg ccctgcataa cggttagagt
     6241 ttaaggttcc gggctcctag ttccaagtcg aaagaaggct tcccaacccg ggggccgggg
     6301 ctcagcggaa gacgagcacg gtggcgtcgt cggagttgcg gccgaagtcg cgcaggagga
     6361 cgccggccaa gagctgcggc tggtggccga ccagccccgg gtaggcggcc gcgtcccagg
     6421 atgcgctcag cccgtccgtg gcgagcacga gtgtggtgcc ttcggcccag cggtgcggcc
     6481 agacgcgcac gttcgagagg cgcgcgccga gcgtgccgtt gctcgggacg gggcggacgg
     6541 gctcgggcga gttgaagacg cgcgcctcga cgttgccgac gcccgcgtag tgcaggctcc
     6601 cgcgccccgc gtccacgagg aaggcgccta tgacggcccc gcgcgtggcg cgcagggcgt
     6661 cgtgcgcgcc ccagattacg tcttccagcg gctcgccctg ccactgcgag agcgcgtcga
     6721 gcgcggccga agatgcctcg tgcgcgccgc ggccgtggcc caggccgtca acgacggcga
     6781 gcagcgtgac ggcgccgcgc tcggcgaaga agtatgcgtc gccgttgacc tcctcgccgg
     6841 ggcgcggcct gctccacacg ccgagctggg ccgagaggcg gcgggcgcgc gccgcgtcgc
     6901 cctcgcgctc gggcgaagcc cacttgcggc cgaggatggc cgtgccgaag gtagtgcggc
     6961 gcccggttag gaggcggcgc gtggtgcctc ggacggtcga gtaggcgtcg aactcgtcga
     7021 gcagccgcct catcgcgccg aagcccgtgc cgaggctccc gccggtcgag acgccgtcgc
     7081 gcacagcgcg ctctaggtcg aagatgcccg gccccttgtc gcagtagaag agctcgagcc
     7141 cggcgccggc gagcgtctcg gcccagtgca ggcagcctcc gcccgtcgcg tagcgcacgg
     7201 cgttcgtgcc catctcctgc accacgatgt ctatctcggc gagcgcgtcc tcgccgaagc
     7261 cgaggcggga cgcgtgcctg tgcacggccc gcctcgccgc ccccacctgc ggctcgtcct
     7321 ttatctgctg cgagtgaaag actctcataa agaattgcgg attgcggatt agaagaagct
     7381 gggcgccttt caatccgcaa tccgcaatgc gcaacccgga atttcccctc agagccagcg
     7441 gacgaccgtg acgcgggtgc cgcggccgac ggctgagact atctcgaact cgtcaacgag
     7501 gcgcttcgag cccggcagcc ccttgcccaa gccccgcccc gtcgagaagc cgtcgcgcat
     7561 ggccgcgtca acgtcggcga tgcccgggcc ttcgtcctcg aatatgaggc ggagcccggc
     7621 gcggccccgc gcgcccgcgg cgagcggctg cgcgatcatt cggccgcggc gcgcgtactt
     7681 gatgacgttg cgcgcaagct ccgaggcgac cgtggccagc cgcgtctggt caatcatgcg
     7741 gaagcccagc tcggccgcca tgcgccgtgc ctcgccgcgc gcgaccgcta tgtcgtgctc
     7801 gtgctcaagg gcgattgatc tgctcggcaa gcgcgctcaa ctccccgaag gacagctcgt
     7861 cgtcctcctc gtctatgccg aactcgctgc gcagaagcct tatgccctcg tcaacgttca
     7921 gaaccgtgtc aacgccccgg agctcgagcc cgagctcgac gagcgtgatg gcgacggccg
     7981 gctgcatgcc gacgacgacg gtgcgcgcgt ccatgatgcg cgccatcgcg gcgatgtccg
     8041 agagcacgcg gcctatgaat gagtcaacca tctcgaggag cgagatgtcg atgaggacgc
     8101 cgcgcgcgcc cgtgcgctcg agctccatca gtatgcgctc ctgaaggtgc atcacagcct
     8161 ggtcgtccat gtccacctgt atggggacga tgagcacgcg gccgaccttc aggattggga
     8221 tccgttgctg tccgtccata agccctccgg gacgcgcctt cacgagtcgc ggcccttctc
     8281 cttctcgccg gtcgtgatcg tctgctcggt ctgcttgagc gtggtgagga gcccctcggc
     8341 gctgccgttc tgcgccttca cgagcgcctt cgtcgagacc accgtgcggc ccagcatctc
     8401 gagcgcgagc ttgatgccgt ccgacatctg cgcgcgcgtg gttatctgcg tgaggtctat
     8461 gccgagctgc accatcgtct gcgcaatcgc cgggctcacg cccgtcagga tgcagcgcgc
     8521 gcccatcagc cgcgccgccg tgacggtctt aatcaggtgg ttggcgacga gcgtgtccat
     8581 cgtccgcacc ccggtgatgt cgaggatggc gatggtcgag ccggtctcga cgaccttctg
     8641 gagcagcgcc tccatcatca tctgcgcgcg gcgcgagtcg agcgtgccga tgatggggag
     8701 cgtcaggatt ttgtcccaga cctttatgac gggcgtggag agctcgagca tgtcggcgcg
     8761 ctgctggcgg attatctcct cgcgcgagcg tatgaaggtc tcgaccatca cgatgcccat
     8821 cttgtcgagg agccgcgtga agtagttcat ctcgggtatg agcgcctcgg catcgccgcc
     8881 cagttcctcg gccaagagcg ggttgacgac gtttctgagg gcgaggatgt aggtcgcgtt
     8941 ctcgagcggc gtgtagccct tgacggcgcg gccgtgggct atctcgttga ggtaggcgcg
     9001 cagctcgtcg aaggccgggt gctcgaagtc ggcgccgccg gaggcgggta tggcctcggc
     9061 gagcatgtct atgacctgcc gcgactggtc gcgcaagtcc ttcttcgaga tcagctcgtc
     9121 gcggaactcg tcggcctcca gccgctcctt tatccagagg ttgagaatct cgtcgcgtcg
     9181 cgtggagagc agcgcggtga tgcgccgctc ctccgaccgc tgtgaaacgt ccttgtcagg
     9241 catctgtcgt cctcgggaaa agtctcgacg gccgccgccg cgcggtcggc gcggcgcggc
     9301 gcgcgggcgt aaggccccgc cggcgggccg tctccgcgac tgtttgtgtg ggcgtttgac
     9361 gaacgcgcgt atcttagcac cgcggggcgc ggggcgacaa cgcggcggcc cccggccgtc
     9421 cggggggccg ccgccgccgt gtggcgcgcg ctctgtgggg agactgaagg ggcgggcgct
     9481 tactgaatct tctgcatggc gatgacggtc atcggcgagt cgccgctcgt gcgggtgtag
     9541 gagacccagt agcctgcctt cgggtatcgc acgaggcggt gcatcgagcc gtccggcttg
     9601 gcctcgacgt cggagccgag gacggctttc gccgaagggg ccgaggcctt ctcgcccagg
     9661 tatgtgacgg agacggcgaa gaccttcttc tggccgtcgt agaagacctg gcacgactcg
     9721 ttgtcgttga aggcgtagaa gtcctgcgtg tcgcccttgt cggtcgggtc gccgagcttc
     9781 ttgcgcgcct cgtcggccgt catgccgatg cgcacgccct tgtactcgac gaaggccggg
     9841 ccttcctttt cgttgccctg cgcggcggcg gccgacgaca gggcggagag gagaagggcc
     9901 gggagggaga ccgccagaag cagccttgtg aaacggagca tgggcattcc tcctagattg
     9961 tcccgtacgg gttgggtcgg gtcggcgggc cgggctcggg agtcgggcga gggtcgcggg
    10021 cggaagcccc acgggatgcc cggcctcggg cttgcctcgc ggtggaggac gataagacaa
    10081 ctgccgccgg caagtcaata ctaaaacggg cgggcggggc ggcctttgac agccccggcg
    10141 cgcgcgtaag aatatctaac cctccccgcc gaaagagcct tatgaaaaga acaaacgtaa
    10201 gagttgcggc cgccttgctc ctcgcgctcc tgtgcgcggg ggcggcgcgc gccgacgact
    10261 gggttcgcgc gcgctcgaag aacttcacgc tcgtgagcga cgcgggcgag tcgaaggcgc
    10321 gcaggctcgc cgtcgagctc gagcagttcc gccacgtcat ctccttgctc ttcccgaacg
    10381 cgcagataga gacgcccgtc gccacgaccg tctatctctt caggtcgcac gagtcgttcc
    10441 gccccttcaa gccgcgccac gagggcaggg taaaggagaa cgtcggcggc tacttcatgg
    10501 ctacgcccga cggcaactac atcacgctca ccgccgcgcc gcgcggcgcc gtgggccccg
    10561 aggagataat cttccacgag tacgagcact tcgtgatgcg caacaacctg ccgcgcgcgc
    10621 cgctctggct gaacgagggg ctggccgagt tctacagcac cttctcgcct tcggacgacg
    10681 ggcagaaggt gcagctcggc gcgcccatcg cgcgccacat agcggtactt agggacgcgc
    10741 gcggccgact gccgctcgcc gagctgctcg ccgttgacca gaagtcgccg cactacaacg
    10801 agggcagcaa ggccggcctc ttctacgcga agtcgtgggc gctggtgcac tacctcatgc
    10861 tcggcgacga cgccaggcgc cagtcgcagt tccgccagtt catcgcccgc acggcgtctg
    10921 acatgaccgt ggaggagaac ttccgacagt ctttccaggc ggacttccgt gtgatagaga
    10981 aggagctcga cgcgtacatc agcaggttca tgttccccgt cctcaccgtg accttcaaca
    11041 agcagctcga cttctcgaag gacgtggaga cggcgcgcct cacggaggcc gagtcgctcc
    11101 gatacctcgg cgacctcctc gcgcacgcgg gcgaggcgcg cgaggccgag aagtatctcg
    11161 aaaagtcgct cggcctggac cccggagcgg cgccggcgcg cgtctcactc gcctacgtgc
    11221 ggctgaggca gaggaggctg ggcgacgcct acaagctgct cgaagaggcc gtcaggctcg
    11281 acccggcgag ctatctggcg cgctaccact acgcgaacgc gctcgcgatg ggcggccggc
    11341 tcgaggaggc ggtagccgca tacagggagg ccgcgcggct gaaccccgcg tggccgcgcg
    11401 cgcagtcggg gctggcctcc gcgctctcgg cgctcgggcg cgacgaggag gcggccgctg
    11461 cccttaaggc cgcaatcgcg ctgagcccga gggacgcgaa cctgttccgc agcctcgcct
    11521 acgcgcagct gcggctcggg cagggcgggg cggccgcgtc gaacgcgctg ctctacctgc
    11581 gcaagcaggg ctggcgcgac gaccacgccc cttacgtctt cttcgccgcc tacctcgggc
    11641 tcacgcggtc gcggcagact cccgtggccg aaaggctgct cggcgaggcc acctcgaaga
    11701 tgaacgccgc cgagtggccc taccccgtct tgcaatactt ccgccgcgag cttacggccg
    11761 agcagttggt ctccgcggcc ggcgatgacc gggacaagct cacagaggcg cacgcctacg
    11821 ccggccttag cctctcaatc gccggggagc gcgaggccgc gctcccccac ctccgctggg
    11881 tggccgacaa cggcaaccgc aacttcgtcg agtaccccct cgccctcgcc gagatacgcc
    11941 gcctcgaaca ggcgcgcaca accccttaat gacgagactc aaataaaaaa gcggaagtcg
    12001 gtcagagaca cttcaggctc tgaccgactt cacgcctttc cctgccttta attaaatctg
    12061 gaagccgcgg attttttcga ccttcttgtc gggcttctgc ggcggggcgg cgaggactgc
    12121 tgagtcctgc tcgcggtgct ggcgctcttc gggcgtgtgc cagcgcgccc actcggcggg
    12181 ggcgtcgaag gtctcgccgc cgtggcgcgt gagtctcggc cgcacgcggc acatgacggg
    12241 cgtgttcacg ccgacgccgg agatgacggc ctgtcccttc gtgagcgctg gcagttcggc
    12301 gagcaactgc cggccggcgc cctcgaccga cttggcgacc gtgtcctggt caatggggtt
    12361 gacgatgcgc atgattatct gcgtcatgca ctgggagagc acgtcctggt cgagcttgcc
    12421 cggccgctga gttatgagcc cgatgcctac g
//
LOCUS       DASPKR010000534         5400 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1246590, whole genome shotgun sequence.
ACCESSION   DASPKR010000534 DASPKR010000000
VERSION     DASPKR010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5400)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5400
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1246590"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..358
                     /locus_tag="VD968_14355"
     CDS             <1..358
                     /locus_tag="VD968_14355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15623.1"
                     /translation="SVSRRQRAPSCTGETQDISSTGLSFTVTSMCLGNRHIFGETLDI
                     RVELPRGWVSLRVVPTRYDFVQDGRLVAVCVVGARIVEMSDGSRAALDEYLRSRGSSA
                     GEAAGRTAQHASAYGT"
     gene            547..1434
                     /locus_tag="VD968_14360"
     CDS             547..1434
                     /locus_tag="VD968_14360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15624.1"
                     /translation="MSDNQAQPTDDLEEDLSGLVSRSAAAVESHAPEAQPQGLPPQLA
                     ALVRGIEPDGLREFTSCVFADISRLLGGVEAVRRAAANGCSLEGLLRVIAALKKSSGY
                     LLTNIETAELRVEGMPGALTETLEAAGFALRHELRRAFEQELAGRDGARPGRQDVLRG
                     CALLENCFQQLTVSLARAFDAGVTGAALFENYRRRREESLALRGELRELLGEVRRVEK
                     GYSIFSSLSLLNRVRRFRRECLHYLMYRDWEEFERFADALELCYDSEGEMRVLLNKLS
                     CYVETLLGQVQMRAVLAEG"
     gene            complement(1535..1870)
                     /locus_tag="VD968_14365"
     CDS             complement(1535..1870)
                     /locus_tag="VD968_14365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15625.1"
                     /translation="MRRTLALLTLVAAAGLAAACGDAGNTNNGNGNGNTNATNLNTNT
                     NATMNTNTMNTNMGNMNGGNTNMGNTNAGNTNRPAGTNMNGTMGNTNSGAGNANRGTT
                     NTGATNRNS"
     gene            complement(2110..2712)
                     /locus_tag="VD968_14370"
     CDS             complement(2110..2712)
                     /locus_tag="VD968_14370"
                     /inference="COORDINATES: protein motif:HMM:NF019932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYE15626.1"
                     /translation="MKNILLASALALAAHSAAAAQAANPGAAKQPAPAASQARARQTP
                     AEAAAERGVRDAFDTLVDGIRRAEADAVMGVYWNSPRLVLFNNNGTVTKGWEQVRENR
                     ESIYTRVKDVKLDVREVNIKLLGLSGAVVTCLWEQSQTADGQPERATGRLTLVFQKVG
                     TAWKAVHAHTSPDRPDPSRLLPSERTGDAAEPAAKPPAKP"
     gene            complement(2740..4248)
                     /gene="gltX"
                     /locus_tag="VD968_14375"
     CDS             complement(2740..4248)
                     /gene="gltX"
                     /locus_tag="VD968_14375"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HYE15627.1"
                     /translation="MTVRARFAPSPTGYLHIGAARTALFNWLFARKEGGQFLLRVEDT
                     DLQRSTDESTRSIIAGLEWLGIADYDEEIVFQSRNAGKHREAAQRLVESGRAYRDFTP
                     KEERGDANVKREIAERARTAAAAPDGADHRSNPFRDIPIEESNRRAEAGEPFAVRLKV
                     PREGRSRFVDAVYGEQERDYSEIEDLVLLRSGDLSPLYNLSVVVDDIEMGITHVIRGQ
                     DHLTNTHKQILIYEALGERVPVFAHLPLILAPNKSKLSKRKHGEVVSLTTYRDRGFVP
                     AAFRNYLALLGWSPGEEQKEIMSLEELVERFSLEGVHRSNAVFNFSEGDPRNWTDQKA
                     LWMNAEYIRTMPLAELMPMVRAEMESAGLWRAEYEAGESAWLERAVDLIRQRFYTLKD
                     FTGQGRAYFADEFEFDEAAVAKNLKKEPRLKELLPALAGELERAEPWTVETVEAALRS
                     FAEREGVKAGLLINASRTALTGQSVGPSMFDVFDIIGRECSAGRLRAAARLV"
     gene            complement(4332..4422)
                     /locus_tag="VD968_14380"
     tRNA            complement(4332..4422)
                     /locus_tag="VD968_14380"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4386..4388),aa:Ser,seq:gct)
     gene            4569..>5400
                     /locus_tag="VD968_14385"
     CDS             4569..>5400
                     /locus_tag="VD968_14385"
                     /inference="COORDINATES: protein motif:HMM:NF024668.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4062 domain-containing protein"
                     /protein_id="HYE15628.1"
                     /translation="MPEKSKHNPVVMISSTARDLPEHREKVMHACLRLGMFYPEMMEH
                     LSAADANAVEVSLGMVEKADVYLGVFGFRNGYVPPGADISVTEMEYNRAVERGIPRLI
                     FLMHDDHPLKATDVETGAGAEKLKALKERLKTDRVVGFFKSPDELLALVIQSLSELRQ
                     PDLTTFHYVSDIPEPPEEFIAHPYTLLQTHRLVGRQRELSLLTDWVAKPDSEVYKARI
                     LNVVAIGGMGKSALTWAWFKEIAPQEMRPLAGRMWWSFYESDATFENFVTRALAYVTR
                     S"
BASE COUNT          907 a         1740 c         1771 g          982 t
ORIGIN      
        1 aagcgtgagc cggcgccaac gggcgccttc ctgcacgggg gagacgcagg acatcagcag
       61 cacggggctg tccttcaccg tcacgtccat gtgcctcggc aaccggcaca tcttcgggga
      121 gactctggac ataagggtgg agctgccgag aggctgggtg agcctgcgcg tggtgcctac
      181 gcgctacgat ttcgttcaag acggcaggct tgtggcggtc tgcgtcgtcg gggctcgtat
      241 cgtcgaaatg agtgacggca gtagggccgc actcgacgag tacctgcgct cacggggaag
      301 ctcggcgggc gaagcagccg ggcgaaccgc gcaacacgcg tcggcctacg gcacttgatt
      361 gtcgaaccct ctttaccaca cggcccaatt ccttcattca cacgcgcgcg gcgagcccta
      421 gtcggcgaac ttatttcgtt gactcagggc gcccgcctgt cgttagatat ttccggggca
      481 tattgccgcc cgcctcaagc tcccggccga agctcgcacc cgcttccccc tcgccgctgc
      541 cacatcatga gtgacaatca ggcacagccg acagacgatc tcgaggaaga cttatcaggc
      601 ttagtctccc gctccgcagc ggccgtcgaa agccatgccc ccgaagcgca acctcaaggg
      661 ctgccgcccc agctcgccgc gctcgtgcgg ggcatcgagc cggacggcct gagagagttc
      721 acgagctgcg tcttcgccga catctcccgt ctgctgggcg gcgtggaggc cgtcaggcgc
      781 gcggccgcta acggctgctc gctggaaggg ctcctccgcg ttatcgcggc gctcaagaag
      841 tcttcgggct acctgctgac gaacatagag acggccgagc ttcgcgtcga agggatgccg
      901 ggcgcgctga cggagacgct cgaagccgcc ggcttcgccc tgcgccacga gctgaggcgc
      961 gcgttcgagc aggagctggc gggaagggac ggcgcgcggc ccgggcggca ggacgtgctc
     1021 cggggttgcg cgctgctcga gaactgcttc cagcagctca ccgtaagcct agcccgcgcg
     1081 ttcgacgcag gggtgacggg ggcggcgctg ttcgagaact accggaggag gcgcgaggag
     1141 tctctggcgc tgcgcgggga gctgagggag ctcctgggag aagtccgacg ggtggagaag
     1201 ggctacagca tcttctcaag cctgtcgctg ctgaaccgcg taaggcgctt ccgccgagag
     1261 tgcctgcact accttatgta ccgcgactgg gaggagttcg agcggttcgc cgacgctctc
     1321 gaactctgct acgactccga gggcgagatg cgggtgcttc taaataagct ttcgtgctac
     1381 gtcgagacgc tcctcggcca agtacagatg cgggcggtgc tggcggaggg ttgaggctca
     1441 cagcctgatt attaggaaaa agggaaggcg cggcgcagcg atgcattcac tgcgtcgcgc
     1501 cttactccgt tctttcgact tttcggggcc tgccctacga gttcctgttc gtggcgcccg
     1561 tgttcgtcgt gccgcggttg gcgttgccgg cgcccgagtt ggtgttaccc atagtgccgt
     1621 tcatgttggt gccggccggc cggttcgtgt tgccggcgtt ggtgttgccc atgttcgtgt
     1681 tgccaccgtt catattgccc atgttggtgt tcatggtgtt ggtgttcatg gtggcgttcg
     1741 tgttggtgtt gaggttcgtg gcgttggtgt tgccgttgcc gttaccgttg ttggtgttgc
     1801 cggcgtcgcc gcacgccgcg gcgaggcccg cggcggccac caacgtgaga agggctaaag
     1861 tcctgcgcat agattcgaat tctcctgtat ggcttaattt gggctacttc aagcgggaaa
     1921 aactatactt aaatcgcact tggctgtcta gccgtgaccg gcaaaaaaat tacttcgccg
     1981 aaggggggcg ccggtgtata atccgcccgt cttcaggggc tccgagcccc cggaggctcg
     2041 caggaagtgc taagaacgga ggcgcggccc gcaggcgaac gggccgcgtt tcttatttcc
     2101 aggccgccct caaggcttgg ccggcggctt cgcggccggc tcggcggcgt cgccggtgcg
     2161 ctcggagggc agcaggcgcg aagggtcagg gcggtcgggc gaggtgtgcg cgtggactgc
     2221 cttccaggcc gtgccgacct tctggaagac gagcgtgagc cggcccgtcg cgcgctccgg
     2281 ctggccgtcg gccgtctgcg actgctccca aaggcacgtg acgacggcgc cgctaaggcc
     2341 cagtagcttt atgttcacct cgcgcacgtc gagcttcacg tccttgacgc gcgtgtaaat
     2401 gctctcacgg ttctccctga cctgctccca ccccttcgtc accgtcccgt tgttgttaaa
     2461 gagcacgagg cgcggcgagt tccaatagac gcccatgacg gcgtcggctt cggcgcggcg
     2521 tatgccgtca acgagcgtgt cgaaggcgtc gcgcacgccg cgctcggccg cggcctcggc
     2581 gggagtctgt cgcgcgcggg cctgcgaagc cgcgggcgcc ggctgcttcg cggcgcccgg
     2641 gttggcggcc tgcgccgccg cggccgagtg cgcggcgagc gcgagcgccg acgcgagaag
     2701 tatatttttc atcattgccg aaaatcctcc gtcaaaaaac tacacgagtc gcgccgccgc
     2761 gcgcaggcgc ccggccgagc actcgcgccc gatgatgtcg aacacgtcga acatagaggg
     2821 gccgaccgac tggcccgtga gcgccgtgcg cgaggcgtta atcagaagcc ccgccttgac
     2881 gccctcgcgc tccgcgaacg agcggagcgc cgcctcgacc gtctcgaccg tccacggctc
     2941 cgcccgctca agctccccgg cgagcgccgg caggagctct ttcaggcgcg gctccttctt
     3001 caaattcttc gcgacggccg cctcgtcgaa ctcgaactcg tccgcgaagt aggcgcgacc
     3061 ctgccccgtg aaatccttga gcgtgtaaaa gcgctggcgt atgaggtcaa ccgcgcgctc
     3121 cagccatgcg ctctcgccgg cctcgtactc cgcgcgccac agcccggccg actccatctc
     3181 cgccctcacc atcggcatca gctccgcgag gggcatcgtg cgtatgtact cggcgttcat
     3241 ccagagcgcc ttctggtcag tccagttgcg tgggtcgccc tcgctgaagt tgaagacggc
     3301 gttcgagcgg tggacgcctt cgagcgagaa gcgctcgacc agttcttcga gcgacataat
     3361 ctccttctgc tcctcgccgg gcgaccagcc gaggagcgcg aggtagttgc ggaaggcggc
     3421 ggggacgaag ccgcggtcgc ggtaggtcgt caaggagacg acctcgccgt gcttgcgctt
     3481 cgagagcttc gacttgttcg gcgcgagtat gagcggcagg tgcgcgaaca cggggacgcg
     3541 ctctccgagc gcctcgtata tgagaatctg cttgtgcgtg ttcgtcaggt gatcctgccc
     3601 gcgtatgacg tgcgtgatgc ccatctcgat gtcgtcaacg acgacggaga ggttgtagag
     3661 cggcgagagg tcgcccgagc gcagcagcac caggtcttct atctcggagt agtcgcgctc
     3721 ctgctcgccg taaacggcgt caacgaaccg cgagcgcccc tcgcgcggga ctttcaggcg
     3781 gacggcgaag ggctcgcccg cctcggcgcg ccggttcgac tcttcgattg ggatgtctct
     3841 gaacgggttg ctgcggtggt cggcgccgtc gggcgccgcg gcggccgtgc gcgctcgctc
     3901 ggctatctcg cgcttgacgt tggcgtcgcc gcgctcctct ttgggcgtga agtcgcggta
     3961 agccctcccc gattcaacga gtcgctgcgc ggcctcgcgg tgcttcccgg cgttgcgcga
     4021 ctggaagact atctcctcgt cgtagtcggc tatacccagc cattcgagcc ccgcgattat
     4081 cgagcgcgtg gactcgtcgg tggagcgctg caagtcagtg tcctcgacgc gcaggaggaa
     4141 ctggcccccc tccttccgcg cgaagagcca gttgaagagc gcggtgcgcg cggcgccgat
     4201 gtgcaggtag ccggtgggcg aaggtgcgaa gcgtgctcgg acggtcataa aagtaaaaag
     4261 gtcagaggcc ggaggccagt aaagacagcg tgtctttcca ctgacccctg acccctgacc
     4321 cctcaaatgt ctggcggaga tggcaggatt cgaacctgcg ataggctttt gacctataac
     4381 ggtttagcaa accgccgcct tcagccactc ggccacatct ccgcgaaggc gaagacctat
     4441 tctagcccgc gacccccgat tgtcaagccg ccgcccctcc cgccagaaac tcgcgccccc
     4501 gcccccgcca agcggtgcta aaattcaccc gcacgcccga actttccgcc gacaggaggc
     4561 tgcctcacgt gcccgagaaa tcgaaacaca acccggtcgt gatgataagt agcacggcgc
     4621 gcgacctgcc agagcaccgc gaaaaggtta tgcacgcatg cctgcggttg gggatgttct
     4681 acccggagat gatggagcac ctgtcggcgg cggacgcgaa cgccgtcgaa gtctcgctcg
     4741 ggatggttga gaaggccgat gtctatctcg gtgtcttcgg gttccgcaac gggtacgttc
     4801 cgccgggggc ggacatctcc gtcacggaga tggaatataa ccgcgcggtc gagcgcggca
     4861 tcccccgcct gatcttcctg atgcacgacg accaccctct caaagcgact gacgtggaga
     4921 cgggcgcggg cgccgaaaag ctcaaagccc tcaaagagag gctaaagact gacagagtcg
     4981 tcggattctt caaatcgccg gacgagctac tcgcgctcgt aatccagagt ctctccgaac
     5041 ttcgtcagcc cgaccttacg acgttccact acgtcagcga catacccgag ccgcccgagg
     5101 agttcatcgc gcacccctac acactgctgc aaacccacag actcgtcggc cgccagcggg
     5161 agctgagtct cctgaccgac tgggtcgcga agcccgattc ggaagtctac aaggcgcgca
     5221 tcctgaacgt cgtcgccatc ggcggcatgg gcaagagcgc tttgacgtgg gcgtggttca
     5281 aagagattgc cccgcaggag atgaggccgc tagccgggcg catgtggtgg agcttctacg
     5341 aatcggacgc caccttcgag aacttcgtca cgcgcgcact ggcctacgtc acgcgaagcc
//
LOCUS       DASPKR010000535         3936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1892034, whole genome shotgun sequence.
ACCESSION   DASPKR010000535 DASPKR010000000
VERSION     DASPKR010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3936)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3936
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1892034"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..381)
                     /locus_tag="VD968_14390"
     CDS             complement(<1..381)
                     /locus_tag="VD968_14390"
                     /inference="COORDINATES: protein motif:HMM:NF015666.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HYE15629.1"
                     /translation="MIKDGIKRLIEDRGARVGVIGLGYVGLPLAVEFARKGFSAVGFE
                     VDERKADSINRGESYIGDVPSEVLADVVKSERLRATIDFDHLSSCDAIIICVPTPLRK
                     TKEPDISYILAAAGEIQKRLRRGQL"
     gene            634..2253
                     /locus_tag="VD968_14395"
     CDS             634..2253
                     /locus_tag="VD968_14395"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15630.1"
                     /translation="MKRCPNCQRVYADESLKFCRADGAPLAAVSPDLEGATLVKLPAA
                     GEGPTELLGGGGGRTSSSLTRPLPPQGRRRRPPRAIDSLAVLPLSNETGEQQAEYLTD
                     GITESIINSLSQLPKLRVVPRATVFRYKGAGADPLAAGRDLGVRAVLAGRMLQLGDQL
                     VVSVELVDVALESQIWGEQYRHKHEGIFDLQERISREISTKLRLRLTGEERRRLAKRY
                     TESTEAYHLYLKGRYYLNKRTTEWIKRGIEHLRRAIDLDPSYALAYAGLADAYAFLAS
                     STGEQPPAEFYPKAAAAALKALELDEGLAEAHTSLGFFRLLYEWDFEAAAREFRRAVE
                     LNPSYANAHDGQSFYFKATGQHERALRACRKVQELDPLSLFASVSTAWAYYFARQYER
                     AAEQNRRALDLDPRFFFAHWSLGLCHAVLGRLEEAAESLERAVEYSDDGVTFKAHLGY
                     VYGLAGRRTEARLVLEEFGALAGRRYVSPYYPAIVHLGLGEHDRALEWLGRALEDRTG
                     FLVFLRVEPMFDPLREDARFQELERRVGPPS"
     gene            2274..3797
                     /locus_tag="VD968_14400"
     CDS             2274..3797
                     /locus_tag="VD968_14400"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYE15631.1"
                     /translation="MTTEVRSEPAERLERGLGLTDATMIVVGSMIGSGIFITSAESAR
                     LVGSPGWLLAAWALAGLLTITGALCCAELAAMMPRAGGQYVFLREAYGPALGFLFGWS
                     LVLVIQTGTIAAVAVAFARFTGVLAPWVSSSNYLVEPVRLSEGYAVSLSTEQLVAVLL
                     ILFLTVTNTRGLKTGKLIQNTFTFTKTAALAGLILVGLLVGWNAGSAAYTSAWWAPQA
                     NGWSPQAAQPGLGAAGALALVMLLGRAMTGPLFAQSAWNNVTFTGSEVRDPARNLPRA
                     LLTGCAVVVGLYLLANLAYVVTLPLPEMQKPANSIATATMHAAIGPAGTTLMAVAIMI
                     STFGCNNGLILAGARVTYAMACDRLFFGRMARLNSRHVPAAALALQGAWASLLTLPRA
                     VTTDTATGKTTYANVYTQLLEYIIPADLVFYVLMVGAVVVLRRKAPDAPRPYRTPGYP
                     LVPAVYIILATLLVLDLVYLARLTSGIGFLIVLTGLPVYFAWSKSRRQEAEGSRKIL"
BASE COUNT          612 a         1388 c         1283 g          653 t
ORIGIN      
        1 gagctgcccc cggcggagcc gcttctgaat ctccccggcc gcggccagta tgtaggagat
       61 gtccggctcc ttcgtcttgc gcaagggggt cgggacgcag atgatgatgg cgtcgcacga
      121 ggagaggtgg tcgaagtcta tcgtggcgcg caggcgctcg gacttgacga catcggcgag
      181 cacctccgaa ggcacgtcgc cgatgtagct ctcgccgcgg ttaatcgagt cggccttcct
      241 ctcgtccacc tcgaagccga cggccgaaaa gcccttgcgg gcgaactcga ccgcgagcgg
      301 cagccctacg tagccgaggc cgatcacgcc cacgcgcgcg cctctgtctt caatgagcct
      361 cttgattccg tctttaatca ttgatatacc cgggttgctg gcagaaagat gtcggttcaa
      421 aatcgttccg gcaggagggg cgccggctgg gccgcgccgc ttcagacagg aaagactagg
      481 gaacaagcgg cgggcgtgtc aagcagggga gcgcggcccg tgccgggcgc gccgcgaaac
      541 cctcgccccg caatcgtctc cgcgcttccc catctgctat cctgcgaccg tcaaactccc
      601 gaaggccggg cgcggcgccc ctcttccaag gaaatgaaac gctgcccaaa ctgccagcgc
      661 gtctatgcgg acgagtccct gaagttctgc cgcgcggacg gcgcgccgct cgccgccgtc
      721 tctccggatt tagagggcgc gactctcgtc aagctcccgg ccgcgggcga agggccgacg
      781 gagcttttag gtggtggcgg cgggcgcacg tcctcgtcgc tgacacgccc gctcccgccg
      841 caggggcgac gccgcaggcc gccccgcgcg attgactccc tcgcagtcct cccgctctcg
      901 aacgagacgg gcgagcagca ggccgagtac ctcacagacg gcatcaccga gagcatcatc
      961 aacagccttt cgcagctccc gaagctgcgc gtcgtcccgc gcgcgaccgt cttccgctac
     1021 aagggcgcgg gcgccgaccc gctcgccgcg gggcgcgacc tcggcgtgcg cgcggtgctc
     1081 gcgggccgca tgctgcagct cggcgaccag ctcgtcgtca gcgtcgaact ggtggacgtg
     1141 gcgctcgaat cacaaatctg gggcgagcag taccggcaca agcacgaggg catcttcgac
     1201 ctgcaggagc gcatctcgcg cgagataagc acaaaactcc ggctgcgcct gacgggcgag
     1261 gagcgaaggc gtctggctaa gcggtacacg gagagcaccg aggcttacca cctctacctg
     1321 aagggccgct actacctgaa caagcgcacg accgagtgga taaagcgcgg catagagcac
     1381 ctgcggcggg cgattgacct cgacccgtct tacgcgctcg cctacgccgg gctggccgac
     1441 gcatacgcct tcctcgcctc ctctacgggc gagcagccgc ccgcggagtt ctacccgaag
     1501 gccgccgcgg ccgcgctcaa ggcgctcgaa ctagacgagg ggctggccga ggcccacacc
     1561 tcgctcggct tcttccgcct gctctacgag tgggacttcg aggcggcggc gcgcgagttc
     1621 cgccgcgccg tagagctgaa cccttcttac gccaacgctc acgacggcca gagcttctac
     1681 ttcaaggcca cggggcagca cgagcgggcg ctgcgcgcct gccgcaaggt gcaggagcta
     1741 gacccgctct cgctgttcgc gagcgtgagc acggcctggg cctactactt cgcgcggcag
     1801 tacgagcgcg ccgccgagca gaaccgccgc gcgctcgacc tcgacccgcg cttcttcttc
     1861 gcgcactgga gcctcggcct ctgccacgcg gtgctcggcc gactggaaga ggccgcggag
     1921 tcgctcgagc gcgccgtcga gtattcggac gacggcgtaa ccttcaaggc gcacctcggc
     1981 tacgtctatg ggctcgccgg acggcgcacg gaggcgcggc tcgtgctcga agagtttggc
     2041 gctctcgcgg ggcgccgcta cgtctcgccc tactacccgg caatcgtcca cctcggcctc
     2101 ggcgagcacg accgggcgct cgaatggctc gggcgcgcgc tcgaagaccg caccggcttc
     2161 ctcgtcttcc tgcgcgtcga gcccatgttc gacccgctcc gagaggacgc gcgcttccag
     2221 gagctggagc gcagggtggg gccgccgtct taaggattga agctcatacg cctatgacga
     2281 ctgaagtcag gagcgagccg gcggagcggc tcgagcgcgg gctcgggctg acggacgcga
     2341 cgatgatcgt cgtcggctcg atgataggct cggggatttt cataacctcg gccgagtcgg
     2401 cgcggctcgt cggctcgccc ggctggctgc tcgccgcgtg ggcgctcgcg gggctgctta
     2461 cgataacggg cgcgctgtgc tgcgcggagc ttgcggccat gatgccgcgc gcgggcgggc
     2521 agtacgtctt cctgcgcgag gcttacggcc cggcgctcgg cttcctcttc ggctggtcgc
     2581 tcgtgctcgt catacagacg gggacgattg cggccgtggc ggtggcgttc gcgcgcttca
     2641 cgggagtcct cgcgccgtgg gtctcttcgt cgaactacct ggtcgagccc gtccgactct
     2701 ccgaaggcta cgccgtgagc ctctcgaccg agcagctcgt cgccgtcctc ctcatactct
     2761 tcctgacggt cacgaacacg cgggggctta agacgggcaa gctcatacag aacactttca
     2821 ctttcaccaa gacggcagcg ctagccgggc tgattctcgt ggggctgctt gtaggttgga
     2881 acgcggggag cgcggcttac acctccgcct ggtgggctcc tcaggcgaac ggctggagcc
     2941 cgcaggcggc tcagcccggt ctgggcgcgg ctggcgcgct cgcgctcgtg atgctactcg
     3001 ggcgggcgat gacggggccg ctgttcgcgc agtctgcctg gaacaacgtg acgttcacgg
     3061 ggagcgaggt gcgcgacccc gcgcgcaacc tgccgcgcgc gctgctgacg ggctgcgccg
     3121 tcgtcgtcgg gctctacctg ctcgccaacc tcgcctacgt cgtgacgctg ccgctcccgg
     3181 agatgcagaa gccggccaac agcatcgcca cggcgacgat gcacgcggcc atcggccccg
     3241 cggggacgac gctgatggcc gtcgccataa tgatctcgac cttcggctgc aacaacgggc
     3301 tgattctggc cggcgcgcgc gtcacatacg cgatggcgtg cgaccggctc ttcttcgggc
     3361 gcatggcgcg cctgaactcc cgccacgtcc ccgccgccgc gctcgcgctt cagggcgcgt
     3421 gggcgtcgct gctcacgctc ccgcgcgccg tcacgaccga cacggcgacg ggcaagacga
     3481 cttacgctaa cgtctatacg caactgctcg agtacataat cccggccgac ctggtcttct
     3541 acgtcttgat ggtcggcgcc gtcgtcgtgc tgcggcgcaa ggcgcccgac gccccgcggc
     3601 cctaccgcac gcccggctac cccctcgtcc cggccgtcta tatcatcctc gccacgctcc
     3661 tcgtcctaga cctcgtctat ctcgcccgcc tcacctccgg cataggcttc ctcatcgtcc
     3721 tcacgggcct gcccgtctat ttcgcatgga gcaagagcag aaggcaggag gcagaaggca
     3781 gtagaaaaat cctctagttc gtgcgctccg aatttgaagc cggagcgcac gaagtaaagc
     3841 ttactgcctt ctgccttctg tttacttcga ccactcgtcg gcgacgacgt actcgacctt
     3901 gacgggaacc tttcggacgt actcctcgcc cgcggc
//
LOCUS       DASPKR010000536         3148 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_338133, whole genome shotgun sequence.
ACCESSION   DASPKR010000536 DASPKR010000000
VERSION     DASPKR010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3148)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3148
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338133"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..774
                     /locus_tag="VD968_14405"
     CDS             <1..774
                     /locus_tag="VD968_14405"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HYE15632.1"
                     /translation="IYNLACPASPVHYQFNPVKTVKTNVMGTINMLGLAKRVRARILQ
                     ASTSEVYGDPEIHPQTEDYWGRVNCNGPRACYDEGKRLAETLMMDYHRQNRVDTRIIR
                     IFNTYGPRMLENDGRVVSNFIMQALRGEELTIYGDGSQTRAFCYVDDLVEGMIRLMNV
                     EEGERPEIDVHDPVNVGNPGEFTMRELAEEVGRAAGVEVRTRFCPLPQDDPRQRRPDI
                     SRARALLGWSPTVTLSEGLKRTVAYFAGRMKPKVTSDDR"
     gene            764..2602
                     /locus_tag="VD968_14410"
     CDS             764..2602
                     /locus_tag="VD968_14410"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HYE15633.1"
                     /translation="MTDKKRAGRASMNVPEMCLSALKRHGKPDALNLKKEGQWLHIPG
                     ADIVRRVRAVALGLSALGVRKGDRVALLSENRPDWSVVDLAILSLGAVNVPIYTTQAP
                     EQVRYILEDSGARVLFVSGRKVYRHARPGVEPVSGLEKVIFFDEGAADLHERAMTLFD
                     MEITGAEMDAAEPEVFSRILDAVEPDDLATIIYTSGTTGEPKGVMLTHESFVSNVLSI
                     GRTLPIFSTDVSLSVLPLSHIFERTVFYVFCHCGVSVYYAASFDLVGEYLREVRPTIM
                     TAVPRLFEKVYHKILKRGTSAGGWRSRLFLWALGVGQRYAELKDKGEQVPPLLEIQQE
                     AASRLVFSKWREGVGGRLRYFVSGGASLSPALSYAFLGAGVNILQGYGMTETCIVSAN
                     RPDDNRVGSVGRPFPGIEVETDEEGEILVRGPNVMRGYYNHPEETAAVFTDDGWFRTG
                     DVGRLDEDGRLYITDRKKELFKLSNGKYVAPQLVESLIKESAYVSQVVVVGAGRKQPA
                     ALIVPDWEALASALPTPQAEEHTLRAAWSQNPAAVKLVQREVAELTKPLHDYERVRRV
                     ALLPEDFSIDGGELTPTLKVKRRVIDEKYSGLIEEIYNGAGAAKEE"
     gene            complement(2688..3014)
                     /locus_tag="VD968_14415"
     CDS             complement(2688..3014)
                     /locus_tag="VD968_14415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15634.1"
                     /translation="MPVTSTARFRKLRTCPGSETLLTFCLGARVASGGAGVAEHLASC
                     DFCGAEAHLLSLHAPPAEALPFAELPMPGHLRRLAEDLLSEPPHNRARFAGALVEIDR
                     LTLTDA"
BASE COUNT          563 a         1052 c         1051 g          482 t
ORIGIN      
        1 atttataacc tcgcctgccc cgcctcgccc gtccactacc agttcaaccc ggtcaagacc
       61 gtaaagacca acgtgatggg cacgataaac atgctcggcc tcgccaagcg cgtgcgcgcc
      121 cgcatactac aggcctccac ctccgaggtt tacggagacc ccgaaatcca cccgcagacc
      181 gaagactact ggggccgcgt caactgcaac ggcccccgcg catgttacga cgaagggaag
      241 cgtctggccg aaactttgat gatggactac caccgccaga acagggtgga cacgcgcatc
      301 atacgcatct tcaacaccta cgggccgagg atgctcgaga acgacgggcg cgtcgtctcg
      361 aacttcatca tgcaggcgct caggggcgag gaactgacca tctacggcga cggcagccag
      421 acgcgcgcgt tctgctacgt ggacgacctc gtggagggga tgatacggct gatgaacgtc
      481 gaggagggcg agcggcccga gattgacgtg cacgacccag tgaacgtcgg caaccccggc
      541 gagttcacga tgagggagct ggccgaggag gtcgggcgcg ccgccggagt cgaggtgcga
      601 acgcgcttct gcccgctccc gcaggacgac ccgcgacagc ggcggcccga catctcgcgc
      661 gcgcgtgcgc tcctcggctg gtcgcccacc gtcaccttaa gcgaggggct caagcggacg
      721 gtcgcttact tcgcgggaag aatgaagccg aaagtgacga gcgatgacag ataagaaacg
      781 ggccgggcgc gcttcgatga acgtgccgga gatgtgcctg tcggcgctga agaggcacgg
      841 caagccggac gcgctcaacc tcaagaaaga gggtcagtgg ctgcacatac ccggcgcaga
      901 catcgtcagg cgcgtgcgcg ccgtcgccct cggcctctcg gcgctcggcg tcaggaaggg
      961 cgaccgcgtg gcgctgctct ccgagaaccg gcccgattgg tctgtcgttg acctcgccat
     1021 cctcagcctc ggcgccgtca acgtccccat ctacacgacg caggcgcccg aacaggttcg
     1081 ctacatcctg gaagactccg gcgcgcgcgt gctcttcgtc tcgggccgca aggtctatcg
     1141 ccacgcgcgt cccggcgtcg agcccgtctc cgggcttgaa aaagttatct tcttcgacga
     1201 gggcgcggcc gacctgcacg agcgcgccat gacgctcttc gacatggaga taaccggcgc
     1261 cgagatggac gccgccgagc cggaggtctt cagccgcatc ctcgacgcgg tcgagcccga
     1321 cgacctggcg acgataatct acacctcggg gacgacgggc gagcccaaag gcgtgatgct
     1381 cacgcacgag agcttcgtct cgaacgtgct ctcgataggg cggacgctcc ccatcttctc
     1441 gacggacgtt tcgctctccg tgctgccgct ctcgcacata ttcgagcgca ccgtcttcta
     1501 cgtcttctgc cactgcggcg tctcagtcta ttacgccgcc tccttcgacc tcgtcggcga
     1561 gtacctgcgc gaggtgcggc cgacgattat gacggccgtg ccgcgcctct tcgagaaggt
     1621 ctatcacaag attctgaagc gggggacttc ggcgggcggc tggcgctcgc ggctcttcct
     1681 gtgggctctg ggcgtcgggc agcgctacgc cgagttgaag gacaagggcg agcaggtgcc
     1741 gccgctcctc gagattcagc aggaggcggc gagccgccta gtcttctcga agtggcgcga
     1801 gggcgtgggg ggccgcctgc gctacttcgt ctcgggcggg gcgtcgctct cgcccgcgct
     1861 ctcctacgcc ttcctcggcg cgggcgtcaa catcctccag ggctacggca tgacggagac
     1921 ctgcatcgtc tcggccaacc gccccgacga caaccgcgtc ggctcggtgg gcaggccctt
     1981 ccccggcatc gaggttgaga cggacgaaga gggcgagata cttgtgcgcg gcccgaacgt
     2041 catgcgcggc tactacaacc accccgaaga gaccgccgcc gtcttcacgg acgacggctg
     2101 gttcaggacg ggcgacgttg ggcgcttgga cgaggacggc cggctctaca tcaccgaccg
     2161 caagaaggag ctcttcaagc tctcgaacgg caagtacgtc gcgccgcagc tcgtcgagag
     2221 tttgattaag gagagcgcgt acgtgagcca ggtcgtcgtc gtcggcgcgg ggcgcaagca
     2281 gccggccgcg ctcatcgtcc ccgactggga ggcgctcgcc tcggcgctcc ccacgccgca
     2341 ggccgaggag cacacgctgc gcgccgcctg gagtcagaac ccggcggccg tcaagctcgt
     2401 ccagcgcgag gtggccgaac tgaccaagcc gctccacgac tacgagcgcg tccgccgcgt
     2461 cgcgctcctg cccgaagact tctccatcga cggcggcgaa ctcaccccca cccttaaggt
     2521 caagcgccgc gtcatcgacg agaagtacag cggcctcatc gaggaaattt acaacggcgc
     2581 cggggcggcg aaagaggagt aggcagcagg cagtagaaaa aaggagcggc gcgtctcggc
     2641 ctcccggccg ggcgcgccgc ttccgtattc ccactgacta ctccctctta agcgtcggtc
     2701 agcgtcaggc ggtcgatctc gacgagggcg ccggcgaagc gcgcgcggtt gtgggggggc
     2761 tcggagagga ggtcttccgc gaggcggcgc aggtgccccg gcatcgggag ttcggcgaag
     2821 gggagagctt ccgccggcgg cgcgtgcagg gagagcagat gcgcctccgc gccgcaaaag
     2881 tcgcaggacg ccaggtgctc ggcgacgccg gccccgcccg acgcgacgcg cgcgccgagg
     2941 cagaaggtca gaagcgtctc cgaacccgga cacgtccgaa gcttacggaa ccgtgctgtg
     3001 cttgtgacag gcatgagtgc tcctcgaagt ctcttattct cctcgccggg cgcggggggc
     3061 cggggcgacg cgagcgaagc gctttcggtt aaagcacagc gcagggcgta ggtcttttgg
     3121 tgaaggcgca gtggccgcgt tcacgggc
//
LOCUS       DASPKR010000537         5673 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1760543, whole genome shotgun sequence.
ACCESSION   DASPKR010000537 DASPKR010000000
VERSION     DASPKR010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5673)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5673
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1760543"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1176
                     /locus_tag="VD968_14420"
     CDS             <1..1176
                     /locus_tag="VD968_14420"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HYE15635.1"
                     /translation="RAVKGAASRKGAPARPRIGFHAPIAGGLANALLKAKEHGCDAVQ
                     MFSRNPRGWKARPLEPEEVAHFKRVRRASGVKVVAVHANYLINLAAADEEIRSKSVAS
                     FREEVERALLLGADYLIVHPGSARGACESDALRTCAESLKSACTGLKMRRFRILIENT
                     AGQGECIGHRFEHLREISARCPELNLGVCLDTAHAFTAGYDLRDEDGLSAALDSLGRQ
                     VGPRNVLAVHFNDSRAAYNSRVDRHWHIGLGHIGAEALRRVATDPRLAHAAFLLETPQ
                     DELADDARNLGVLRSFLDGNDAPAGKEEAILDIRLKDRTEGPFYLQIRRQVEALISAG
                     QLKPGDALPSPASLGQRLSVDRGEVQRAYFELEHAGLVTKSTGRDFLGKEKVTYAVK"
     gene            1459..4122
                     /gene="leuS"
                     /locus_tag="VD968_14425"
     CDS             1459..4122
                     /gene="leuS"
                     /locus_tag="VD968_14425"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HYE15636.1"
                     /translation="MDEKYFPDKIEEKWQKFWEESGAFNAEPDPAREKKFYCLEMLPY
                     PSGFLHMGHVRNYSIGDALAWFKRLQGFNVLHPMGWDSFGQPAEQAAIKRGVMPREWT
                     EANIEHMRGQFKRMGFSFDWRREVAAHRPEYYKWDQWFFLRMLERGLAYKKVSPVNWC
                     PREETVLSNEQSSGGVCWRCGAAVEKRDIEQWFLRITHYAEELLDGMREIEAGWPERV
                     LTMQRNWIGKSEGAYVEFQVKDTKERVSVFTTRIDTIYGATAVVVSVDHPVIVYSPLR
                     DEVERFAERVRAARSAARAPGEEEEKEGINTGLLAVNPFSGEQIPVWAANYVLAEYGT
                     GAVMSVPAHDERDFEFAQKYSLPVRRVIERVSHGQEAIPRDPEAEDQSAAMTHAFTDY
                     GILVNSDRWSGMLSARAKREMAEFAAREDFGQPATTYRLRDWGISRQRFWGAPIPVIY
                     CDRCGVVPVPDEDLPVVLPERAEFTGAGRSPLAGVEEFVNATCPKCKGAARRETDTMD
                     TFIDSSWYFFRYADPRNDRAPFGEEAASYWTPVDQYIGGVEHAVMHLLYTRFWTKFMR
                     DIGLVRFNEPVERLMTQGMVVAETFYREGEEPGSKVFFNPADVEVERDERGRISRATL
                     VKDGLPVEVGPFEKMSKSVNNGVDPNEMITAYGADATRLFTLFAAPVENDLRWLEAGI
                     DGALRFLRRTHSAVFRWRASLRHAPRDAGSAGEFSEEARRLRHETHRTIARVTDDFEA
                     LRFNTAVAAMMELMNALGEFRATPQSATPADLFAVREALEALVLMLAPLTPHASEEMW
                     EGLGHGGGLLGGGARWPRADEALARKEQLEIPVQVNGKVRGRVHVGADATDEEVRAAA
                     LADERVRGWTEGKDVLKVIVVPRRLVNIVVR"
     gene            4305..5270
                     /locus_tag="VD968_14430"
     CDS             4305..5270
                     /locus_tag="VD968_14430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15637.1"
                     /translation="MRLPLFRRAGLALFVVGLFSVTASAQLGGLGGLGDKLKKKNPAA
                     KLLEGKPPITTSLEDAKWGDASHDGFAPREAVRSLMTLQRTPNGGFVLQPGYYAMQTQ
                     SYCLKAGTHGPGGGDGYLYAPPKGPAEDAVMTIVRHSVNRPEIDQQRIQQLLWAIIAR
                     AKFEDLASELKATASQLLTPRQLASLNRSALDVLHGNALTDALGGVPEPLRQIAQAEA
                     QLRQMLTTPGASFAEMERVAVLSGNAPLGPGSRDVPSGRWSLHPDGYYVRYLPSGYSS
                     TRVEIWVPQGSPSVGKEYDPATHIAVPGNTARQRLIQSGRAQREQ"
     gene            complement(5481..>5673)
                     /locus_tag="VD968_14435"
     CDS             complement(5481..>5673)
                     /locus_tag="VD968_14435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15638.1"
                     /translation="RNPNDAPDTNYAGFDFWLAKMNSFSLPGEDVRDETVALSRVNRA
                     EMVRAFILSIEYRGRFGQP"
BASE COUNT          957 a         1917 c         1927 g          872 t
ORIGIN      
        1 cgggcggtga agggcgcggc gtccaggaag ggcgcgccgg cgcggccacg catcggcttc
       61 cacgcgccga ttgccggggg cctggcgaac gctctgctga aagctaaaga gcacgggtgc
      121 gacgccgtgc agatgttctc gcgcaacccg cgcggctgga aggcccggcc tttggagccg
      181 gaagaggtcg cccacttcaa gcgcgtgcgg cgcgcgtctg gcgtcaaggt ggtagcggtg
      241 cacgccaact acctcatcaa cctcgcggcg gccgacgaag agattcgctc gaagagtgtc
      301 gcgtccttcc gcgaggaggt cgagcgcgcc ctgctgctcg gcgcagacta cctcatcgtc
      361 caccccggca gcgcgcgcgg cgcctgcgaa tcggacgcgc tgcgaacctg cgcagagagc
      421 ctgaagtccg cttgcaccgg ccttaagatg aggcgcttcc gcatactcat agagaacacg
      481 gccgggcagg gcgagtgcat aggccaccgc ttcgagcacc tgcgcgaaat ctcggcgcgc
      541 tgccctgaac tgaacctcgg cgtctgcctc gacacggcgc acgctttcac ggccggctac
      601 gatcttcgcg acgaggacgg gctctcggcc gcgctcgact cgctcggccg tcaggtaggc
      661 ccccgcaacg tcctcgccgt ccacttcaac gactcgcgcg ccgcctacaa ctcgcgcgtt
      721 gaccgccact ggcacatagg cctcggccac atcggcgccg aggcgctcag gcgcgtcgcc
      781 accgacccgc gccttgcgca cgccgccttc ctgctcgaaa ccccgcagga cgagttggcc
      841 gacgacgcgc gcaacctcgg cgtgctacgc tctttcctcg acggcaacga cgcgcccgcc
      901 gggaaggagg aagccatttt ggacatccga ctgaaagacc gcaccgaagg ccccttctac
      961 cttcagatac gccgacaggt cgaggcgcta atctcggcgg ggcagctcaa gcccggcgac
     1021 gcgctcccct cgcccgcctc gctcgggcag aggctctccg ttgaccgcgg cgaagtccag
     1081 cgcgcctact tcgagttgga gcacgccggc ctcgtcacga agagcacggg ccgcgacttt
     1141 ctcggcaaag agaaggtcac ttacgcggtg aagtagggcg gaatacgatt cgacaagcgc
     1201 ggcggtgttg cgctaagatt gccgggcatt aagaggcgcg cgagcgccgg ttagtttatg
     1261 aagcgatttg accacccagt taagctcctc cttacggtgc cgcagcgcgg gcgccgcgcg
     1321 tgagagcgcg cgtcgggcgg tgcggcgaca ctcctgagcg gaaatcaaac cgacaagaga
     1381 ataggtccgg ccgccggctt tgtttgtgaa ggccggggcg tttctgtacc gtgaggtaag
     1441 gaaaggcgag agtttgtcat ggacgaaaag tattttcccg ataagatcga ggagaagtgg
     1501 cagaagtttt gggaggagtc gggcgctttc aacgctgagc ccgacccggc gcgcgagaag
     1561 aagttttact gcctggagat gctcccttac ccttcgggct tcctgcacat gggccacgtg
     1621 cgcaactact ccataggtga cgcgctggcg tggttcaagc gcctgcaagg cttcaacgtg
     1681 ctgcacccta tggggtggga cagcttcggc cagccggcag agcaggccgc aatcaagcgg
     1741 ggcgtgatgc cccgcgagtg gaccgaggcg aacatcgagc acatgcgcgg gcagttcaag
     1801 cgcatgggct tcagcttcga ctggcggcgc gaggtcgcgg cgcaccggcc agaatattac
     1861 aagtgggatc agtggttctt cctgcgcatg ctggagaggg gcttggccta caagaaggtc
     1921 tcgcccgtca actggtgccc gcgcgaggag accgtgctgt cgaacgagca gtcgtcgggc
     1981 ggtgtgtgct ggcgctgcgg cgcggccgtc gagaagcgcg acatagagca gtggttcctg
     2041 cgcatcaccc actacgccga agagctgctg gacggcatgc gcgagataga ggcgggctgg
     2101 cccgagcgcg tgctgacgat gcagcgcaac tggataggca agagcgaagg cgcctacgtc
     2161 gagttccagg ttaaagatac caaagagcgc gtcagcgtct tcaccacgcg catagatacc
     2221 atctacggcg cgaccgccgt cgtcgtctcc gttgaccacc cggtcatcgt ctattcgccg
     2281 ctcagggatg aggtcgagcg cttcgccgag cgcgtcaggg ccgcgcgctc ggccgcgcgc
     2341 gcgccgggcg aggaagagga gaaggagggc ataaacaccg ggctgctggc cgtcaaccct
     2401 ttcagcggcg agcagattcc cgtctgggca gctaactacg tcctggccga gtacggcacc
     2461 ggcgctgtga tgagcgtgcc ggcgcacgac gagcgcgact tcgagttcgc gcagaaatac
     2521 tcgttgcccg tccgccgcgt catcgagcgc gtctcgcacg ggcaggaggc catcccgcgc
     2581 gacccggagg cggaagacca gtcggccgcg atgacgcacg ccttcacgga ctacgggata
     2641 ctggtcaact ccgaccgctg gagcggcatg ctctcggcgc gcgcgaagcg cgagatggcc
     2701 gagttcgccg cgcgtgagga tttcgggcag ccggccacga cctaccgcct gcgcgactgg
     2761 ggcatctcgc gccagcgctt ctggggcgcg cccatacccg tcatctactg cgaccgctgc
     2821 ggcgtcgtcc ccgtccccga cgaagatctg cccgtcgtgc tgccggagcg cgctgagttc
     2881 acgggcgcgg gccgctcgcc gctggccggc gtcgaggagt tcgtcaacgc cacctgcccg
     2941 aagtgcaaag gcgcggcgcg gcgggagacg gacacgatgg acaccttcat tgattcgtcg
     3001 tggtacttct tccgctacgc cgaccctcgg aacgaccgcg cgccgttcgg cgaggaggcg
     3061 gcgagctact ggacgccggt tgaccagtac atcggcggcg tcgagcacgc cgtgatgcac
     3121 ctgctctaca cgcgcttctg gacgaagttc atgcgcgaca tagggctggt gcgcttcaac
     3181 gagcccgtcg agcgcctgat gacgcagggc atggtcgtcg ccgagacctt ctaccgcgag
     3241 ggcgaggagc cgggctcgaa ggtcttcttc aacccggccg acgtggaggt agagcgcgac
     3301 gagcgcgggc gcatctcgcg cgcgacgctc gtaaaggacg ggctgcccgt cgaggtcggg
     3361 ccgttcgaga agatgtcgaa gtcggtcaac aacggcgttg acccgaacga gatgataacg
     3421 gcctacggcg ccgacgccac gcgcctgttc acgctgttcg ccgcgccggt cgagaacgac
     3481 ctgcgctggc tggaggccgg cattgacggc gcgctcaggt tcctgcgccg cacgcactct
     3541 gccgtcttcc gctggcgcgc gtcgctgcgc catgcgcccc gcgacgccgg gtcggccggc
     3601 gagttctccg aggaggcgcg gcggctgcgc cacgagacgc accggacgat tgcgcgcgtc
     3661 accgacgact ttgaagccct gcgtttcaac acggccgtcg cggcgatgat ggagctgatg
     3721 aacgcgctgg gcgagttcag ggcgacgccg cagagcgcga cgcccgccga cctgttcgcc
     3781 gtgcgcgagg ctttggaggc gctggtcttg atgctggcgc cgctgacgcc gcacgcgtcc
     3841 gaggagatgt gggagggcct gggccacggg ggcggcctgc tgggcggcgg cgcgcgctgg
     3901 cctcgggccg acgaggcgct cgcgcgcaag gagcagctcg aaatccccgt ccaggtcaac
     3961 ggcaaggtgc gcgggcgcgt ccacgtcggg gccgacgcca ccgacgagga ggtgcgcgcc
     4021 gccgctctcg ccgacgagcg cgtgcgcggc tggactgagg gcaaggacgt gctcaaagtc
     4081 atcgtcgtcc cccgccgcct cgtcaacatc gtcgtccgct gagactattg cgtagtgcgg
     4141 atttcggatc gcgggttgaa agacaagctc ttctattccg tgatccgaaa tccgccgccc
     4201 gcaatttgaa tccttctcgc gcgcccgtta cactctcccc ttctcccgtc cacgcccgcc
     4261 tcggcgggcc catgctgaca aaagttttta cggagattta cgagatgaga ctccctctgt
     4321 tcaggcgcgc gggcctcgcg ctcttcgtcg tcggcctctt ttccgtgacc gcctcggcgc
     4381 agctaggcgg cctgggcggc ctcggcgaca agctcaagaa gaagaatccg gcggccaagc
     4441 tgctcgaagg caagccgccc atcaccacca gcctcgaaga cgcgaagtgg ggcgacgcct
     4501 cgcacgacgg cttcgcgccg cgcgaggccg tgcgctccct tatgactttg cagcgcacgc
     4561 cgaacggcgg cttcgtgttg cagcccggct actacgcgat gcagacgcag agctactgcc
     4621 tgaaggccgg cacgcacggc ccgggcggcg gcgacggcta cctctacgcg ccgccgaagg
     4681 ggccggccga ggacgccgtg atgaccatcg tccgccactc ggtcaaccgc cccgagatcg
     4741 atcagcagcg catacagcag ttgctgtggg ccatcatcgc ccgcgcgaag ttcgaggact
     4801 tggcctcgga gcttaaggcg acggcctcgc agcttctcac gccgcggcag ctcgcctcgc
     4861 tgaaccgcag cgcgctcgac gtgctccacg gcaacgccct gaccgacgcg ctcggcggcg
     4921 tgccggagcc cctgcgccag atcgcgcagg ccgaggcgca gctccgccag atgctgacca
     4981 cgcccggcgc gtccttcgcc gagatggagc gcgtcgcggt cttgagcggc aacgcgccgc
     5041 taggccctgg cagccgcgac gtgccgagcg gccgctggtc tctgcacccg gacggctact
     5101 acgtgcgcta cctcccctcg ggctacagct cgacgcgcgt ggaaatctgg gtgccgcagg
     5161 gcagcccctc ggtcggcaag gagtacgacc cggcgacgca catagccgtc cccggcaaca
     5221 ccgcgcgcca gcggctcata cagtccggcc gcgcgcaacg cgagcagtaa aggcggcgcc
     5281 ccacaccgcc cccgactgac catgcgcctc cggcgtgaac cgtggttaac ggcgagcgcc
     5341 tcgccccctc gcgcggcacg gtcaacagcg acgtggtgtt gataagctcg gcctggcccg
     5401 aatgaaactc ccggacaaag cggggcggcg gccgtcgtca atgagttgac gacggccgcc
     5461 gccccgcttt gtcacgaggg ttagggttgg ccgaagcggc cgcggtactc tatcgagagg
     5521 atgaaggcgc gcaccatctc ggcacggttg acgcgcgaga gcgccacggt ctcgtcgcgc
     5581 acgtcctcgc ccggcaggct gaaggagttc atcttcgcca gccagaagtc gaagccggcg
     5641 tagttcgtgt cgggcgcgtc gttcgggttg cgc
//
LOCUS       DASPKR010000538         4708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1115445, whole genome shotgun sequence.
ACCESSION   DASPKR010000538 DASPKR010000000
VERSION     DASPKR010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4708)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4708
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1115445"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            31..2289
                     /locus_tag="VD968_14440"
     CDS             31..2289
                     /locus_tag="VD968_14440"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GH92 family glycosyl hydrolase"
                     /protein_id="HYE15639.1"
                     /translation="MSTLLLCLLFMCQSVAAAPGQVTRPLVSEVDPFVGVDGGGNTVP
                     GAKVPFGFANPSPDTAPNPDPNSWATNGYESDREIIGFSQTHVSGTGGEGKYGNFRVT
                     PQTGWVELKDLASPKRDERAEPGYYAVTLTKPDVRAELTTTRLVAVHRYTFPRATGAH
                     LVFDAGSVVLTGGGAGRRQQPIASSARVVAPDRVEGMGSFIGGWNPSPYTLYFSAELS
                     RPSAAHGAWRGDEVYAGARSVAGEQAGAGLYLTFDAAAGATVEIKIGLSFVSAEKARA
                     NIARETRGAGFDEVRRRASREWEQALAKIRVEGGSEEERRIFYTALYRSHYMPHDLSG
                     ENAWWRSAEPHYEDYYALWDTFRTLHPLLTLIQPRRQRDMVRSLVGTYRHTGWMPDAR
                     IAGSNGMTQGGSNSDVVIADAFVKGLKGVDYKTAYRAMVRNAEEDSPRPLYEGREAAE
                     YRERGYLSTRWERSASRTLEYAYNDFCVAQVARGLGKTADYRKYLARSRNWANLWDAA
                     TKSIRPREPDGRWMEPFDKTKLYMLDYPRFIWMSAPYYEGSAYQYSTYVPHDARGLIE
                     RVGGDEEFTRWLDAFFGEGGAGGEALRPEGLYTQGNEPDLLAPFLYTHAGRPDKAQAR
                     VRQIMRREYRVGRAGLPGNDDAGTMSSWYVWNAAGLYPNAGQAFYYIGSPVFTRAVVT
                     LGAGRAFEIEAPAASASNIYIQSARLNGKALERAWLTHAEVSRGGRLVLRMGDRPSAW
                     GRASRPPSIPAR"
     gene            complement(2293..2796)
                     /locus_tag="VD968_14445"
     CDS             complement(2293..2796)
                     /locus_tag="VD968_14445"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HYE15640.1"
                     /translation="MPDDENIERTLTLRWEDPQALAEAGRGLPGLEYLRRIAAGELPR
                     PPIGALLNFALVEVNEGRAVFAAEPAECHYNPIGVVHGGLAATLLDSAMGCAVHSALP
                     AGAGYTTLEIKVNFVRAMTVRTGPVRCEAALVHLGGRTATAEGRIVDAEGKLYAHGTT
                     TCLVFRP"
     gene            complement(2816..>4708)
                     /locus_tag="VD968_14450"
     CDS             complement(2816..>4708)
                     /locus_tag="VD968_14450"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HYE15641.1"
                     /translation="LSAIVPASAQATLQSETPAKFEPTDYGFDYARREVMIPMRDGVR
                     LHTVILVPKGAKGAPMLLTRTPYDATALTTHTNSSHIGPSLYGYDNATDVVVEGGYIR
                     VVQDVRGKHGSEGDYVMNRPLRGPLNPTSVDHSTDTYDTIEWLVRNVPESNGRVGILG
                     ISYNGFLPLMALVNPHPALKVSVPMNPMVDGWLGDDWFHNGAFRQQMMPFIYDQQATR
                     KSELKWWASHYDDYDMYMEAGSAGELGRRRGLEQLGFWRKLLEHPTYDAWWREQAVDK
                     VLASQPLKVPVMLVHSLWDQEDIYGAPAVYEAIEPKDTANNKVFLVIGPWYHGQMIRD
                     GSSLGALHFGSDTSLTFRREILRPFLDQYLKEGAPKADVAPVTAFETGTNTWRRLPSW
                     PAGCQAGCSVRPTPLYLAAGLKAGLDAAGAGGAAFTEYVSDPAKPVAFRARPIRPVGA
                     AGGRWPEWLVDDQREASGRPDVLAFVSDVLTAPLKISGEPVVNLFASTSGTDSDWVVK
                     LIDVYPDEVAGQPEMGGYQLMVAADIFRGRYRESLETPKAITPDKPLLYRFDLPTANH
                     VFLPGHRIMVQVQSSWFPLYDRNPQTFVPNIFWAKPGDYRKATQRVYHAPGRASHVVL
                     PLVTTR"
BASE COUNT          732 a         1633 c         1623 g          720 t
ORIGIN      
        1 tcaaaggcga agagaatccg gcgcaggaaa ctgtcaacac tcctcttgtg cctgctcttc
       61 atgtgtcaaa gcgtcgcggc cgcgccgggg caagtgacgc ggcctctcgt ctccgaagtt
      121 gacccgttcg tcggcgttga cggcgggggc aacaccgtcc ccggcgctaa agtccctttc
      181 ggcttcgcga acccgagccc cgacaccgcg ccgaaccccg acccgaacag ttgggcgacc
      241 aacggctacg agtccgacag ggagatcatc ggcttctcgc agacgcacgt ttcgggcacg
      301 ggcggcgagg gcaagtacgg caacttccgc gtcacgccgc agacgggctg ggtcgagctt
      361 aaagacctcg cctcccccaa gcgggacgag cgggccgagc ccggctacta cgccgtcacg
      421 ctcacgaagc cggacgtccg cgccgagttg acgacgaccc ggctcgtcgc cgtccaccgc
      481 tacactttcc cccgcgcgac gggcgcgcac ctcgtcttcg acgccggctc cgtcgtcctc
      541 accggcggcg gcgcgggccg ccggcagcag cccatcgcca gctccgcgcg cgtcgtcgcg
      601 cccgaccgcg tagagggcat gggcagcttc ataggcggct ggaacccttc gccctacacg
      661 ctctacttct cggccgaact ctcgcgcccc tccgccgcgc acggcgcctg gcgcggcgac
      721 gaagtgtatg ccggcgcgcg ctcggtcgcg ggcgagcagg cgggcgccgg cctctacctc
      781 accttcgacg cggccgcggg cgccaccgtc gaaatcaaga tcggcctctc tttcgtgagc
      841 gccgagaagg cgcgcgcaaa catcgcgcgc gagacccgcg gggcgggctt cgacgaagtc
      901 cgtcgccgcg cctcgcgcga gtgggagcag gcgctcgcga agataagggt cgagggcggc
      961 agcgaagagg agcgccgcat cttctacacg gcgctctacc gctctcacta catgccgcac
     1021 gacctctcgg gggagaacgc ctggtggcgc tcggccgagc cgcactacga agactactac
     1081 gccctctggg acaccttccg cacgctccac cccctgctaa cgttgatcca gccgagaagg
     1141 cagcgcgaca tggtgcgctc gctcgtgggc acataccggc atacgggctg gatgccggac
     1201 gcgcgcatcg ccggctcgaa cggcatgacg cagggcggct cgaactcaga cgtagtcata
     1261 gccgacgctt tcgtgaaggg cctgaagggg gttgactaca agacggccta ccgcgcgatg
     1321 gtcaggaacg ccgaggagga cagcccgcgc ccgctctacg aagggcgcga ggccgccgag
     1381 taccgcgagc gcggctacct cagcacgaga tgggagcgct ccgcctcgcg gactttggag
     1441 tacgcctaca acgacttctg cgtcgcgcag gtcgcgcgcg ggctggggaa gacggccgac
     1501 taccgcaaat acctcgcgcg ctcgcgcaac tgggcgaacc tctgggacgc cgcgaccaag
     1561 tcaatccgcc cgcgcgagcc ggacgggcgc tggatggagc ccttcgacaa gacgaagcta
     1621 tacatgctcg actacccgcg cttcatttgg atgagcgcgc cctactacga gggctccgcc
     1681 taccagtact cgacctacgt cccgcacgac gcgcgaggcc tcatcgagcg cgtgggcggc
     1741 gacgaggagt tcacccgctg gctcgacgcg ttcttcggcg agggcggcgc gggcggcgag
     1801 gcgctcaggc ccgaggggct ctacactcaa gggaacgagc ccgacctgct cgcgcctttc
     1861 ctctacacgc acgccggccg ccccgacaaa gcgcaggcgc gcgtgcgaca gattatgcgc
     1921 agggagtacc gggtggggcg cgccgggctg ccgggcaacg acgacgccgg cactatgtct
     1981 tcgtggtacg tatggaacgc cgccgggctc tacccgaacg ccgggcaggc gttctactac
     2041 atcgggagcc ccgtcttcac gcgcgccgtc gtcacgctcg gcgcgggccg cgccttcgag
     2101 atagaagcgc cggcggcttc ggcgtcgaac atctacatcc agtccgcgcg gctcaacggg
     2161 aaggcgctcg aacgcgcctg gctcacgcac gcagaggtct cgcgcggagg ccggctggtt
     2221 ctgcgaatgg gcgaccgccc ctcggcgtgg gggcgcgcga gccggcctcc gtcaatcccc
     2281 gcgcgctgaa gctcaggggc ggaagacgag gcaggtggtc gtcccgtgcg cgtagagttt
     2341 gccttcggcg tcaacgatcc ggccttcggc cgtggccgtc cgcccgccga ggtgaacgag
     2401 cgccgcctcg cagcgcaccg gccccgtccg cacagtcatc gcccgcacga agttgacctt
     2461 aatctctagc gtcgtgtagc ccgccccggc cggcagcgcg gagtggacgg cgcagcccat
     2521 cgccgagtcg agcagcgtgg cagctagccc gccgtgcacg acgccgatgg ggttgtagtg
     2581 gcactcggcc ggctccgcgg cgaagacggc ccggccctca ttcacctcga cgagcgcgaa
     2641 gttgaggagc gcgccgatgg gcgggcgcgg cagctcgccc gccgcgatcc tgcgcaggta
     2701 ttcgaggccg ggcaggccgc ggcccgcctc ggccagcgcc tgcgggtctt cccatctgag
     2761 cgtcagcgtc cgctctatat tttcgtcgtc gggcatgcga tcctcggcgg ccgtctcagc
     2821 gcgtcgtgac cagtggcagc acgacgtggc tggcccgccc cggcgcgtga tagacgcgct
     2881 gagtggcctt cctgtagtcg cccggctttg cccagaagat gttggggacg aaggtctgcg
     2941 ggttgcggtc gtagagcggg aaccagctcg actgaacctg caccatgatg cggtggccgg
     3001 gcaggaagac gtggttggcg gtcggcaggt cgaagcggta gagcagcggc ttgtcgggcg
     3061 ttatcgcctt cggcgtttcg aggctctcgc ggtagcgccc gcggaagatg tccgcggcga
     3121 ccatcaactg gtagccgccc atctcgggct gcccggcgac ctcgtccggg taaacatcta
     3181 tgagcttcac gacccagtca gagtccgtgc cgctcgtcga ggcgaagagg ttgacgacgg
     3241 gctcgccgct tatcttcaac ggggcggtca gaacgtcgga gacgaaggcg agcacgtcgg
     3301 gccgtccaga cgcctcgcgc tggtcgtcca cgagccactc gggccagcgg ccgccggcgg
     3361 cgcctaccgg ccggatgggg cgcgcgcgga acgcgacggg cttcgccggg tccgagacgt
     3421 actcggtgaa ggccgcgccg cccgccccgg ccgcgtcgag ccccgccttc aagcccgcgg
     3481 cgaggtagag cggcgtcggg cgcacgctgc aaccggcctg gcacccggcg ggccacgagg
     3541 gcaggcggcg ccaggtgttc gtccccgtct cgaacgccgt gacgggcgcc acgtcggcct
     3601 tcggcgcgcc ctccttcagg tactggtcca ggaacggccg gaggatttcg cggcggaagg
     3661 tgagcgaggt gtcgctgccg aagtgcaacg cgccgagcga gctgccgtcg cggatcatct
     3721 gtccgtgata ccacgggccg atgacgagga agaccttgtt gttggccgtg tccttcggct
     3781 cgatggcctc gtagacggcc ggcgcgccgt agatgtcctc ctggtcccag aggctgtgga
     3841 cgagcatgac gggaaccttg agcggctgcg aagcgagcac cttgtccacc gcctgctcgc
     3901 gccaccacgc gtcgtaggtc gggtgctcca gaagcttgcg ccagaaccct agctgttcga
     3961 gcccgcggcg ccgccccagc tcgccggccg agcccgcctc catgtacatg tcgtagtcat
     4021 cgtagtggct cgcccaccac ttcagctccg acttgcgcgt ggcctgctgg tcgtagatga
     4081 agggcatcat ctgctgccgg aacgcgccgt tgtggaacca gtcgtcgccg agccagccgt
     4141 ccaccatcgg gttcatcggc acagagacct ttagcgccgg gtgcgggttg actaacgcca
     4201 tcagcggcag gaacccgttg taggagatgc cgaggatgcc gacgcggccg ttcgactcgg
     4261 ggacgttccg cacgagccac tcgatcgtgt cgtaggtgtc ggtcgagtgg tcaacgctcg
     4321 tcgggttcag aggccctcgc agcgggcggt tcatcacgta atcgccctcg gagccgtgct
     4381 tgccgcgcac gtcctgcacg acgcgtatgt agccgccctc gactaccacg tccgtcgcgt
     4441 tgtcgtagcc gtaaaggctc gggccgatgt gcgagctgtt cgtgtgggtc gtgagcgccg
     4501 tggcgtcgta gggcgttcgc gtgagcagca tgggcgcgcc cttcgcgcct ttggggacga
     4561 gtatgaccgt gtgcagcctc acgccgtcgc gcatcggtat catcacttcg cggcgggcgt
     4621 agtcgaagcc gtagtcggtg ggctcgaact tcgcgggagt ctcgctctgg agcgtcgcct
     4681 gcgccgacgc cgggacgatg gccgacaa
//
LOCUS       DASPKR010000539         7848 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1115750, whole genome shotgun sequence.
ACCESSION   DASPKR010000539 DASPKR010000000
VERSION     DASPKR010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7848)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7848
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1115750"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VD968_14455"
     CDS             complement(<1..245)
                     /locus_tag="VD968_14455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15642.1"
                     /translation="MALPSLFKKSDALLMGVCVLLAAGFLALAATNAASAGNFLTIDS
                     LFFTSVCLLMALTFIAIPAMTLRERGLLKNPFAIEEGV"
     gene            complement(256..933)
                     /locus_tag="VD968_14460"
     CDS             complement(256..933)
                     /locus_tag="VD968_14460"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HYE15643.1"
                     /translation="MSTEARVGQLPATEWDGGALPYRVGHRKLGMWLFIVSDAMTFSA
                     MLVAYSYARAASVHWPTPFKFSPSVVFSTVMTLFLLASSFTMVMAVRASAQNRLRAAR
                     RWIGATMFGGLMFLVLHLIEWSNLIGEGLRPFGVKPGSHFAHLWAEHWPQAPPLFGAS
                     FFAITGLHMFHVFTGVVYLGFIAARIGRTRHEDVEISGLYWHFVDLVWMFVFPLIYLM
                     SVDMTTN"
     gene            complement(938..1645)
                     /locus_tag="VD968_14465"
     CDS             complement(938..1645)
                     /locus_tag="VD968_14465"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HYE15644.1"
                     /translation="MTQAEGVLDISTVRPRGGRPPRGPNGRGPNGGGPGGGGPGGGGG
                     DDRPRRELSHDRYRIGVLVGVASILMMFTALASAYVVRSGLPTSFDWKPVNLPSFVWV
                     STALIVVSSVTFSVAKRALARGDEAAYRLWLSVTLALGFGFLASQFLAWRQFVARGVY
                     LASNPHSSFFYVFTGLHALHLLGGILALAFLLAYARRGAAAGGPKRRVLTDAAGIYWH
                     FMDFLWVSIFLLLLLWR"
     gene            complement(1656..3632)
                     /locus_tag="VD968_14470"
     CDS             complement(1656..3632)
                     /locus_tag="VD968_14470"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HYE15645.1"
                     /translation="MAEAEIQQGAETAADAHAEHAAHGGAGAGHGHHHPPTGFIRKYV
                     FSIDHKIIGIQYLFLALFSVFVGLIMSVLMRMNLSWPGTSWPILGTLFPEGAPNGVMT
                     PEFYLSLVTMHGTIMVFFVLTTAPQGGFGNYFLPIQIGADDMAFPVLNMLSFWTTLVG
                     LIVIVAAIFVGGNSSSDFAPDFSKMPVVGPTGGWTAYPTLSAIGETLNVPGMGMGMNL
                     WIISIAIFCVASLLGALNFIVTLLNLRTRGMSLMRMPLTCWSWFTTAILALLSFPVLL
                     AAGVLLFLDRNAGTSFFIPGGLSNGTTLIDHQGGSPILWQHLFWFFGHPEVYIAILPG
                     MGVTSHILSTFARKPVFGYRAMVFAMFAIGLLGFFVWGHHMFLSGMSPYTGMAFSVLT
                     LSIGVPSAIKTFNWLGTLWGGRIRFTTPMLFSIGFVSLFVAGGITGLVLGQTSLDLSM
                     HDTYFVLGHFHLVMGVAAIFGMFAGMYFWFPKMFGRMMSERLGKIHFWPTMIGVYAIF
                     IPMHSMGIVGLPRRYSQFYEFVNGEMRMVFDFNAPTVSLIQFTTWAAIITAAVQVVFL
                     FNFFWSIFKGERASDNPWEATTLEWTTATPPPHDNFGGVPPVVYRGAYEYSVPGAPDD
                     YVMQTTPDETAPNEPASAGAVQGRGNGHNGHENR"
     gene            complement(3656..4498)
                     /locus_tag="VD968_14475"
     CDS             complement(3656..4498)
                     /locus_tag="VD968_14475"
                     /inference="COORDINATES: protein motif:HMM:NF012344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HYE15646.1"
                     /translation="MGRALAIFIWVMTGLTLWMFLSGRWWFPAAITEHGPAYDRQFML
                     TIIVVGVAFTAAQVALGYIIWRYRDTGGAARAAYSHGNNRMEILWTAITAVVFITVAV
                     LGQRVWANLHFEGAPADSARVRVTAQQFQWNFHYAGADGKFGRTDPAKISDESINYIG
                     LDSTDPAAADDAVSQTLIAQVGRPIELVLTARDVTHSFWVPPLRFKQDAVPGLDINVH
                     FKPVKAGRYEIACAELCGQQHYKMKSFMLILPEDEYNSLATLPQAQFQRRATELLNKY
                     PVQY"
     gene            complement(4581..5501)
                     /gene="cyoE"
                     /locus_tag="VD968_14480"
     CDS             complement(4581..5501)
                     /gene="cyoE"
                     /locus_tag="VD968_14480"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: protein motif:HMM:TIGR01473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HYE15647.1"
                     /translation="MRELSLEINSEVPSAAALAPPAARARLAAFVELTKPRITFLIVL
                     TSAAGFCLGSKGSIDYLAFANALTGIALLSSGIATLNQYMERGVDARMRRTASRPLPT
                     GKLAPAHALAFGAALTVLAEIYLAAFVNVLTAAFGVAVVVGYLALYTPLKTRTSLSTV
                     VGAFPGAMPPLMGWTAATGQVGTEAWALFAILFAWQFPHFLAIAWMYREDYARAGILM
                     LPVVEPDGRLTALQIVVWTLLLVPVSLFPAALGTTGPVYFYGAFVLGMLFLATSLHAA
                     FANTRQGARRLLLASVLYLPVLFGLMVFNK"
     gene            complement(5527..6426)
                     /locus_tag="VD968_14485"
     CDS             complement(5527..6426)
                     /locus_tag="VD968_14485"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE15648.1"
                     /translation="MRSKRAKFLVALLAALCLLTFSPACGGADDEEDAADAGTEESSE
                     TASLTPYSPTGKEGIISGAVNFEGAAPAPKPISMDQDPVCAQAGEAVSEDIVINGDKL
                     QNVFVYISEGKAGDKDIKGYSFTPPPTPAVLDQKGCQYVPHVLGVQANQKLQILNSDP
                     TSHNVNAMADKNPKFNQGQGPSAPPLEKTFARPETLIPVKCNQHPWMRAYIGVLGHPF
                     FAVSGKDGRFEIKGVPPGTYTLTAWHEKYPKGLTQSVTVAAGESKSADFKFSASQLAA
                     DNSGQKSALQVLPALELPLIGHH"
     gene            complement(6480..>7848)
                     /locus_tag="VD968_14490"
     CDS             complement(6480..>7848)
                     /locus_tag="VD968_14490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15649.1"
                     /translation="FEHKIEDPAIYDKGKVKDPREHLRMPDPYMKPEWKTALVTFLLG
                     SVGTEGPNVPTSLFYKPTDQQKAIQDGWWVIKKYNCMGCHTVQVGQSSVLSGLPMYQE
                     SGDLKKDQLPPGLTTEGARVDPDWLLRFLSDPSLSGWSEGLDLGGDARAQRPPAAPHG
                     AQPTGRVGIVTGPDAGRGQAGTQQQGGQTQMGALKPQPGENRNGVRSYLKARMPTFNF
                     SPNELRTLIRFFLAVSAQNETHIKEQSEPLTEEERNLARALFTSQAAPCLKCHMTGDP
                     GHDQTATAPNFLDAAVRLKPDWTYRWLLDPQRIMPGTAMPSELFKREGERWVFNGPLP
                     ASASEYRGDHARLLVRYLLQMTPEEQARTARAQPAPSGAPPSGVSAPPAQPVASKRQR
                     AGSRDRTAAAARRRAPPQSVGKLKSARGARKHQVSGRSPTRRERARWRQSAASGQQRR
                     PDFSP"
BASE COUNT         1368 a         2476 c         2718 g         1286 t
ORIGIN      
        1 acgccctcct caatcgcgaa cgggttcttc aggagcccgc gctcgcgcag cgtcatcgcc
       61 gggatggcga tgaaggttag cgccatcagc aggcagacgg acgtgaagaa gaggctgtca
      121 atggtcagga agttgccggc gctcgcggcg ttcgtcgccg cgagcgcgag gaagcccgct
      181 gccagtagca cgcagacgcc catcagcagc gcgtccgact ttttgaaaag tgacggaagg
      241 gccatctctc ctccgctagt tcgtcgtcat gtccacggac atcaggtaga tgagcgggaa
      301 gacgaacatc cagacgaggt caacgaagtg ccagtagagc ccgcttatct ccacgtcctc
      361 gtggcgggtg cggcctatgc gcgcggcgat gaagccgaga tagacgacgc ccgtgaagac
      421 gtggaacatg tgaaggcccg ttatcgcgaa gaagctcgcg ccgaagagcg gcggcgcctg
      481 cggccagtgc tcggcccaca ggtgcgcgaa gtggctgccc ggcttcacgc cgaaggggcg
      541 aaggccctcg ccaatcaggt tgctccactc gatgaggtgg aggacgagga acatgagccc
      601 cccgaacatc gtcgcgccta tccagcggcg agcggcccgc aggcggttct gcgccgacgc
      661 cctgacggcc atcaccatcg tgaagctcga cgccagcagg aagagcgtca tcacggtaga
      721 gaagacgacg ctaggcgaga acttgaaggg cgtgggccag tggacgctcg ccgcgcgcgc
      781 gtagctgtag gcgacgagca tggccgagaa ggtcatcgcg tccgagacga tgaagagcca
      841 catgccgagc ttgcggtggc cgacgcggta ggggagcgcc cccccgtccc actcagtcgc
      901 cggcagttgc ccaacgcgcg cttccgtgct caatgcgtca cctccagagt aaaaggagaa
      961 ggaatatgga gacccacaga aagtccatga agtgccagta aatccccgcg gcgtcggtga
     1021 gcacccgccg cttcggcccg ccggccgcgg ccccgcgccg cgcgtaggcc agtagaaagg
     1081 cgagggcgag tatcccgccg agcaggtgca aagcgtgcag ccccgtgaag acgtagaaga
     1141 aggagctgtg cgggttggac gccagataga cgcctcgcgc gacgaactgc cgccaggcga
     1201 ggaactgcga cgcgaggaaa ccgaagccga gcgccagcgt cacgcttagc cagagccggt
     1261 acgcggcctc gtcgccccgc gcgagcgccc gcttcgcgac cgagaacgtc acgctgctta
     1321 cgacgatgag cgcggtgctc acccatacga acgaagggag attgaccggc ttccagtcga
     1381 acgaggtcgg cagccccgag cgcacgacgt aggcgctcgc cagcgccgtg aacatcatca
     1441 gtatcgaggc gacgcccacg aggacgccta tgcggtagcg gtcgtgcgaa agctcgcgcc
     1501 gcgggcggtc gtcccccccg cctcccccgg ggccgccccc gccggggcct ccgccgttcg
     1561 gccccctgcc gttcggcccg cggggcgggc gaccgccgcg cggccgcacg gtcgagatgt
     1621 cgagcacgcc ctcggcttga gtcaccttct ccctctcacc tgttttcgtg gccgttgtga
     1681 ccatttcccc gtccttgtac tgcccccgcg ctcgccggct cgttcggcgc cgtctcgtcc
     1741 ggcgtcgtct gcatcacgta gtcgtcgggc gcgcccggca ccgagtactc gtatgcgccg
     1801 cgatagacga cgggcggcac gccgccgaag ttgtcgtgcg gcggcggggt cgcggtcgtc
     1861 cactcgagag tcgtcgcctc ccacgggttg tccgaggcgc gctcgccctt gaagatgctc
     1921 cagaagaagt tgaagaggaa gacgacctgc acggcggccg tgattatcgc cgcccaggtc
     1981 gtgaactgta tcagcgagac ggtcggggcg ttgaagtcga agaccatcct catctcgccg
     2041 ttcacgaact cgtagaactg cgagtagcgg cgcggcaggc ccacgatgcc catcgagtgc
     2101 atcgggatga agatggcata gacgcctatc atggtgggcc agaagtgaat cttgcccagc
     2161 cgctcgctca tcatccggcc gaacatcttc gggaaccaga agtacatccc ggcgaacatg
     2221 ccgaagatgg ccgccacgcc catcacgagg tggaagtggc cgagcacgaa gtatgtgtcg
     2281 tgcattgaga ggtcgagcga agtctgcccg agcacgagcc cagtgatgcc gcccgccacg
     2341 aagagtgaga cgaagccgat ggagaacagc atcggcgtcg tgaagcgtat tcgcccgccc
     2401 cagagtgtcc cgagccagtt gaaggtctta atcgccgacg gcacgcctat cgagagcgtg
     2461 agcaccgaga aggccatccc cgtgtagggg ctcatgcccg agaggaacat gtggtggccc
     2521 cagacgaaga agccgagcag gccgatcgcg aacatggcga agaccatcgc gcggtagccg
     2581 aagaccggct tgcgggcgaa ggtcgaaagt atgtgcgagg tcacgcccat gccgggcagt
     2641 atcgcgatat agacctccgg gtggccgaag aaccagaaga ggtgctgcca gagtatgggc
     2701 gagccgccct gatggtctat cagagtcgtt ccgttcgata gcccgccggg gatgaagaag
     2761 ctcgtgccgg cgttgcggtc gaggaagagg agaacgcccg cggcgagaag caccgggaac
     2821 gagagaaggg cgagaatcgc ggtggtgaac caagaccagc acgtgagcgg catcctcatc
     2881 agtgacatgc cgcgcgtccg aaggttcagg agcgtgacga tgaagttgag agcccccaaa
     2941 agcgacgcga cgcagaaaat cgcgatgctg ataatccaga ggttcatgcc catccccatg
     3001 ccggggacgt tcagtgtctc tcctatcgcc gaaagggtcg ggtaggccgt ccacccgccc
     3061 gtcggcccga cgacgggcat cttgctgaag tcgggggcga agtctgagct gctgttgccg
     3121 ccgacgaaga tggcggcgac gatgacgatg aggcccacga gcgtcgtcca gaacgagagc
     3181 atgttcagga cggggaaggc catgtcgtcg gcgccgattt gaatcggcag gaagtagttg
     3241 ccgaagccgc cctgcggcgc cgtcgtcagc acgaagaaga ccataatggt cccgtgcatg
     3301 gtgacgagcg agaggtagaa ctcgggcgtc atcacgccgt tcggagcgcc ctccgggaag
     3361 agcgtcccga gaatcggcca cgaagtgccc ggccaggaca ggttcatcct catcagcacc
     3421 gacattatca gcccgacgaa gaccgagaag agcgcgagga agaggtactg gatgcctatg
     3481 atcttgtggt caatgctgaa gacgtacttg cgtatgaagc cggtcggggg gtggtggtgg
     3541 ccgtggccgg ccccggcgcc gccgtgcgcg gcgtgctcgg cgtgggcgtc cgccgccgtc
     3601 tcagccccct gttgaatctc agcctctgcc atctctttaa gctccttgtc ggcagtcagt
     3661 actgaaccgg gtacttgttc aaaagctctg tggcgcgcct ctggaactgc gcctgcggca
     3721 gggtggcgag cgagttgtac tcgtcctcgg gcaggatgag catgaagctc ttcatcttgt
     3781 agtgctgctg gccgcagagc tcggcgcacg caatctcgta gcggcccgcc ttgaccggct
     3841 tgaagtggac gttaatgtcg aggcccggca cggcgtcctg cttgaaccgc agcggcggca
     3901 cccagaagct gtgcgtcacg tcgcgggccg tgagcacgag ctcgatgggg cggcccacct
     3961 gcgcgatgag tgtctggctc acggcgtcgt ccgccgcggc cgggtccgtc gagtctagcc
     4021 cgatgtagtt gattgactcg tcgcttatct tcgcggggtc tgtgcggccg aacttgccgt
     4081 ctgcgccggc gtagtggaag ttccactgga actgctgcgc ggtgacgcgc acgcgcgccg
     4141 agtcggccgg cgccccctcg aagtgaaggt tcgcccagac cctctggccg agcacggcga
     4201 ccgttatgaa gacgacggcc gtgatggccg tccagagaat ctccatgcgg ttgttgccgt
     4261 gcgagtaggc cgcgcgcgcg gcgccgcccg tgtcgcggta gcgccagatg atgtagccga
     4321 gcgcgacctg cgccgccgtg aacgcgacgc cgaccacaat gatggtgagc atgaactgcc
     4381 tgtcgtaggc ggggccgtgc tccgtgatgg cggcggggaa ccaccagcgc ccgctcagaa
     4441 acatccagag cgtcaggccc gtcattaccc atatgaagat cgcgagagca cggcccatag
     4501 agcctccggg ggagcagtaa gcagtcagca gccagctttt tgcgctcggc ctgatagctg
     4561 aatgctaatt gctgaccgcg tcatttgttg aagaccatca gcccgaacag tacgggcagg
     4621 tataggacgg aggcgagcag caggcgcctc gcgccctggc gcgtgtttgc gaaggccgcg
     4681 tgcaggctcg tggcgaggaa gagcatgccg agcacgaacg cgccgtagaa atagacgggg
     4741 cctgtggtgc cgagcgccgc cgggaagagg ctcacgggga cgagcagcag agtccagacg
     4801 actatctgca gggccgtgag ccgcccgtcg ggctcgacca cgggcagcat cagaatcccc
     4861 gcgcgcgcgt agtcttcgcg gtacatccac gctatggcga ggaagtgcgg gaactgccac
     4921 gcgaacagta tggcgaagag cgcccaagcc tcagtgccga cctgccccgt cgccgcagtc
     4981 cagcccatca gcggcggcat cgcgccgggg aaggcgccca cgacggtcga gagcgacgtg
     5041 cgcgtcttga gcggcgtgta gagcgcgagg tagccgacga cgacggcgac gccgaaggcc
     5101 gccgtcagta cgttgacgaa ggccgcgagg tagatttccg ccagcactgt gagcgcggcg
     5161 ccgaaggcga gcgcgtgcgc cggcgcgagc ttccccgtcg gcagcgggcg cgaggccgtc
     5221 cgccgcatgc gcgcgtccac cccgcgctcc atgtactggt tcagtgtcgc tatcccggac
     5281 gagagcagcg ctatgccggt tagcgcgttt gcgaaagcga ggtagtcaat cgaacccttc
     5341 gagccgaggc agaagccggc ggccgacgtg agcacgatga ggaaagtgat gcgcggcttc
     5401 gtaagctcta cgaaggcggc gagccgcgct cgcgccgccg gcggcgcgag cgcggccgcc
     5461 gacggcacct ctgaatttat ttcgagcgat aactccctca tgaatcggtg gcgcttccct
     5521 tccctgtcag tggtggccga tgagcggcag ctcaagcgcc ggcagcacct gtagcgcgct
     5581 cttctggccc gagttgtcgg ccgcgagctg cgaggcgctg aacttgaagt cggccgactt
     5641 gctctcgccc gccgcgaccg tgacgctctg cgtcaggccc ttcgggtact tctcgtgcca
     5701 ggccgtgagc gtgtaggtgc cgggcggcac tccctttatc tcgaagcggc cgtccttgcc
     5761 cgagacggcg aagaacgggt ggccgagcac gccgatgtag gcgcgcatcc aggggtgctg
     5821 gttgcacttg acggggatga gcgtctcggg gcgcgcgaag gtcttctcaa gcgggggcgc
     5881 ggatggcccc tggccctggt tgaacttcgg gttcttgtcg gccatcgcgt tgacgttgtg
     5941 cgatgtcggg tcgctgttca ggatttggag cttctggttg gcctgcacgc cgagcacgtg
     6001 cgggacgtac tggcagccct tctggtcgag gacggccggc gtcgggggcg gcgtgaagct
     6061 gtagcccttg atgtccttgt cgccagcctt gccctcgctg atatagacga agacgttctg
     6121 aagcttgtcg ccgttgatga cgatgtcttc ggagacggcc tcgcccgcct gcgcgcagac
     6181 cgggtcttga tccatgctga tgggcttggg ggcgggcgcg gcgccttcga agttgacggc
     6241 cccgctgatg atgccttcct tgcccgtcgg gctgtagggc gtgaggctcg cggtctcgga
     6301 cgactcctct gtgccggcgt cggcggcgtc ctcctcgtcg tcggcaccgc cgcaggcggg
     6361 cgagaacgtc agaaggcaga gcgctgcgag cagcgcgacc aaaaacttcg cgcgtttaga
     6421 gcgcatgtaa gttcctcctc gggtatgaaa actttagccc aatgataccg cgaacggcct
     6481 cacggcgaga aatcggggcg gcgctgttgg ccggacgccg ccgactgtcg ccaacgcgcc
     6541 cgctcgcgcc gggtcgggct gcgcccggag acttgatgct tgcgcgcccc tcgcgcgctc
     6601 tttaactttc cgacgctctg cggcggcgcg cgtcgtcggg cggcggccgc cgtgcggtcg
     6661 cgcgagcccg cgcgctgacg cttcgaggcc acgggctgcg cgggcggcgc cgacacaccc
     6721 gagggcggcg cgcccgacgg ggctggctgt gcgcgggcag tgcgagcctg ctcttcgggg
     6781 gtcatttgca acaggtagcg cacgagcagc cgtgcgtggt cgccgcggta ctcggaggcg
     6841 gaagccggga gcgggccgtt gaagacccag cgctcgccct cgcgcttgaa caactccgaa
     6901 ggcatcgccg tccccggcat gatccgctgc gggtctagta gccagcggta agtccagtcg
     6961 ggcttaagcc gcacggcggc gtcgaggaag ttcggcgccg tcgccgtctg gtcgtggccg
     7021 gggtcgcccg tcatgtggca cttgaggcac ggggcggcct gggacgtgaa gagcgcgcgg
     7081 gcgaggtttc gctcctcctc ggtcaggggc tcgctctgct ccttgatgtg cgtctcgttc
     7141 tgagccgaga cggcgaggaa gaagcgaatg agcgtgcgca gctcgttcgg agagaagttg
     7201 aacgtcggca tgcgcgcctt caggtacgag cgcacgccgt tgcggttctc tccgggctgc
     7261 ggcttgagcg cgcccatctg cgtctggcct ccctgctgct gcgtgccggc ctgtccgcgc
     7321 ccggcgtcgg ggcctgtgac gatgcctact ctgccggtgg gctgcgcgcc gtgcggcgcg
     7381 gccggcggcc gctgcgcgcg ggcgtcgccc cctaagtcaa ggccctcaga ccatccgctc
     7441 aaactggggt cgctcaggaa ccggagcagc cagtccgggt caacgcgcgc gccttcggta
     7501 gtcaagccgg gcggcagttg atcttttttg aggtcgccgc tctcctggta catcggcagc
     7561 cccgaaagca cggagctttg cccgacctgc accgtgtggc agcccatgca gttgtacttc
     7621 tttatgaccc accagccgtc ctgaatcgcc ttctgctggt cggtcggctt atagaagagc
     7681 gacgtcggga cgttcggccc ttctgtgccc acgctcccga ggaggaaggt gacgagcgcc
     7741 gtcttccact cgggcttcat gtaggggtcg ggcatgcgca ggtgctcgcg agggtctttc
     7801 accttgccct tgtcgtagat ggcagggtct tcgatcttgt gctcgaag
//
LOCUS       DASPKR010000540         2202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_81151, whole genome shotgun sequence.
ACCESSION   DASPKR010000540 DASPKR010000000
VERSION     DASPKR010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81151"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..622)
                     /locus_tag="VD968_14495"
     CDS             complement(<1..622)
                     /locus_tag="VD968_14495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15650.1"
                     /translation="MEVTCPNCDSRKNVEAAVFDALYCTVCPTCGALFGTRPQAQGGE
                     SAETLSADDIIVIPEESPGAFAADQFVASAEDVLEADAPAAAESQFTVPPSASAVVVT
                     APAQPSSPFAEAAPAQETEPAAEAEIWAPLPLAARPAPDGYAVGMRVLRVAPAWLLLS
                     SLGFLAVLLLFNWMSKPVGEAVAAPAPESVLQNAATSTTSEPVAPKP"
     gene            1095..>2202
                     /locus_tag="VD968_14500"
     CDS             1095..>2202
                     /locus_tag="VD968_14500"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HYE15651.1"
                     /translation="MLSACQRLPNLIFWPVLAAGACALLLAAREFPPPPPGLAYLLFA
                     LVTLSLGTRFVVKVPRSRDYVAFADAFAVVGLLVFGAGQTVPIAAVASACAALRLTRD
                     ARAVLSCAASAALWVTLAGLLVGALAGHSLEGSGAFNVLVALCAVAALRSALAFTFAA
                     AAPAGEHDARRNLTQLSCFLFWAFVTNLAVVSSAGLLAAAAGYFGLHAFLAAATVVSA
                     AHFLYGVYLRNVEASEARGPAPQLFARDAGEVFRSAFEHASIGMGLITPKGRWLKVNR
                     SLCELLGYEEERLLRLSLEDVVHPDDAGQVLAHLKDLLKGTASTYRAERRFLHEQGQA
                     VWLLWSAAPITDEDDSGDVRLIFQAQDITDRKHSE"
BASE COUNT          300 a          783 c          751 g          368 t
ORIGIN      
        1 cgggcttcgg cgcgacgggc tcggacgttg tgctggtcgc ggcgttctga agcaccgact
       61 cgggcgcggg cgcggcgacg gcctcgccga caggcttcga catccagttg aaaagcagga
      121 ggacggcgag gaacccgagg ctgctcagca ggagccaagc cggcgcgacg cgaagcacgc
      181 gcatacccac ggcgtagccg tccggcgcgg gccgcgcggc cagcggcaac ggagcccaga
      241 tttctgcctc ggcggcgggc tcggtctcct gcgcgggcgc agcctctgcg aaggggctcg
      301 agggctgcgc gggggcagtc acgacgacgg cggaggccga cggcggcacg gtgaactgac
      361 tttctgccgc ggccggggca tctgcttcga gcacgtcttc ggccgacgcc acgaactggt
      421 cggcggcgaa agccccgggc gactcttcgg ggatgacgat gatgtcatcg gccgagagcg
      481 tctcggcgct ctcgccaccc tgcgcctgcg gccttgtgcc gaagagcgcg ccgcacgtgg
      541 ggcagaccgt gcagtagagg gcgtcgaaca cggcggcttc aacgttcttc cgcgagtcac
      601 agttcgggca ggtgacttcc atgtgagatt gcgcctttct caaaatgggg cgaggtcttg
      661 aacatgtcgg ttcgggcagc tactgccggc gtcgaaagac tgggttgcgg gcggactgcc
      721 gacgcatgcg gcaacaatcc gcatgccagc acggcgctcg actatcgtgt gagcggaggg
      781 cgtgtaaatc cttcatcccg agggcgccgg gacgggccgc gatgacaaag aatgtcagcg
      841 gcggctgacg ttttttggaa gcgcggggcc ggcgttccag cttttcgggg ctgcgcgggc
      901 ttttgtgttt gctgccggac agtaaactgc gaacgaatcg gcaggcacga gggttgctgc
      961 ccaacgggcg tgtgccctcg actgcacgcg cgcgcgtctc ccctttttga cagcctgacg
     1021 ggcgagcttt agcgcccgct tatcgctgcg aggccccgaa cgtctgccac tcgcccaggc
     1081 ccgacggccc atctatgcta tccgcctgcc aacgcctccc taacctcatc ttctggccgg
     1141 ttctcgcggc gggcgcgtgc gccctcctgc tggccgcgcg cgagttcccg cccccgccgc
     1201 ccggcctcgc ctacctgctc ttcgcgctcg tcacgctgag cctcggcacg cgcttcgtcg
     1261 tcaaagtccc gcgctcgcgc gattacgtgg ccttcgccga cgcgttcgcc gtcgtcggcc
     1321 tgctcgtctt cggggccggc cagaccgtcc cgatcgccgc cgtcgcctcg gcctgcgccg
     1381 cgctgcggct tacgagggac gctcgggccg tgctctcttg cgccgcctcg gccgcgctgt
     1441 gggtcacgct cgcggggctt ctggtgggcg cgctcgccgg gcacagtctc gaaggctccg
     1501 gcgcgttcaa cgtcttagtc gccctgtgcg ccgtcgcggc gctgcgctcg gcgctggcct
     1561 tcacgttcgc ggcggccgcg cccgccggag agcacgacgc gaggcgcaac ctcactcaac
     1621 tttcgtgctt cctcttctgg gctttcgtca cgaacctcgc ggtcgtctca tccgcggggc
     1681 ttctcgccgc ggccgcgggc tacttcggcc tccacgcctt cctcgccgcg gccaccgtag
     1741 tctcggccgc gcacttcctc tacggcgtct atctgcgcaa cgtcgaggcg tccgaggcgc
     1801 ggggccccgc gccgcagctc ttcgcgcgcg acgccggcga ggtgttccgc agcgccttcg
     1861 agcacgcctc aatcggcatg gggctcatca cgccgaaggg gcgatggctc aaggtcaacc
     1921 gctcgctctg cgagttgctc ggctacgagg aagagcggct gctgcgcctg agcctcgaag
     1981 acgtcgtcca cccggacgac gcgggccaag tgctcgcgca cctgaaagac ctgctgaagg
     2041 gcacggcctc cacctaccgc gccgagcggc gcttcctcca cgagcagggg caggccgtct
     2101 ggctcctctg gagcgccgcg cccatcacgg acgaggacga cagcggcgac gtgcgactca
     2161 tattccaggc ccaggacatc accgaccgta agcactccga gg
//
LOCUS       DASPKR010000541         3856 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1892981, whole genome shotgun sequence.
ACCESSION   DASPKR010000541 DASPKR010000000
VERSION     DASPKR010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3856)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3856
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1892981"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            116..391
                     /locus_tag="VD968_14505"
     CDS             116..391
                     /locus_tag="VD968_14505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15652.1"
                     /translation="MRHRIENVETGTWNRVIEDLKASGFEEVYRYGGMDAGIDYNRCE
                     LVSRADGELVVFEWDNWSEGEIRAELPRLEALREKYRLSEPSEVDGP"
     gene            388..858
                     /locus_tag="VD968_14510"
     CDS             388..858
                     /locus_tag="VD968_14510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15653.1"
                     /translation="MSEQTSRITHALMRVAADLGHGGPLSEYKIDSGEGGYGVTLAIS
                     KPFPSPGQNRFRSPSMTETLAKGRREVEEFLEKLSAEFNVFRLADLEPKYPFLHPTFY
                     SFCFQDSAGEGHAFEYRIECSSHLDERYEALVREFESFFESRRVFDKFFESLRG"
     gene            869..1324
                     /locus_tag="VD968_14515"
     CDS             869..1324
                     /locus_tag="VD968_14515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15654.1"
                     /translation="MGIPLDIFSLYRLSGEGANCRHHLLLRVGRPAFSNADERDYTRA
                     TEAADGKARALLEQYEAEVLAAECAGRHAAELAGELQSRPVGDELGEGRGGRYVELWV
                     AGTRFGRPWVVMGTAGTEAEFWRAVGEDEDLSRLSPSPPAEKLRAYFLA"
     gene            complement(1415..>3856)
                     /locus_tag="VD968_14520"
     CDS             complement(1415..>3856)
                     /locus_tag="VD968_14520"
                     /inference="COORDINATES: protein motif:HMM:NF024972.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease family protein"
                     /protein_id="HYE15655.1"
                     /translation="AAPLEFTAAARQSQAVLSVPMPDGSFSRFRVEESPIMEPALAAK
                     HPELKTYRGQGLDDPTATARFDVTPHGFHAFVLSASGAVLIDPYAEGDTENYISYRKL
                     DLGEDDQAFECHFDLANPEAQTAPSEEAAEAPASVNLAAGGGTLRTYRLALAATGEYT
                     QKAGGTVAAALSRMVTSMNRVNGVYEREVGVRMVMVDNELIIFTDPTLDPYENANGSV
                     MLRQNQVVCDSLVGTLNYDIGHVFSTGGGGVALLNSPCNATTKAGGVTGSSNPVGDPF
                     DIDYVAHEMGHQFGGQHTFNGSTHNCAGGNRSAGAAYEPGSGSTIQAYAGICRAQDLQ
                     RNSDPYFHIKSLEQIIAFTQGSGNACAARATTENTAPVVDGGPDYNIPKDTPFTLTAA
                     ASDADGDALTYLWEQYDLGPASAAPPAANGDRDGDGQARPIFRSYNPTTSPSRTFPSL
                     RYILENANQPPTTYDCGRTNDPATGLPRPCLTGEILPQITRTMNFQVTVRDNRGDAGG
                     VRSDLVRVNVHAGAGPFVVQHPDTAVEWEGASTQTVTWAVAGTDAAPVSAANVRISLS
                     VDGGLTFPHVLAETTPNDGSQAVNVPDVETDRARIKVEAVGNIFFDISNASFAIRRAQ
                     ARVADLSITDLASGCAPELQGKVTLEGPAPAGGAAVVITNDNPAASFPAVVTVPAGQT
                     VKTFKYTISPVVARVAGTVGASSGGVSVTRSLTVRPIRASSLTLSPSRLKGGTGSTGT
                     VTLECAAAPGNITVALSSSAPSVASVPASVVIPAGTQSATFPVTTKPVNAAKTIGIKA
                     TAGGLTISSPLVIDP"
BASE COUNT          574 a         1219 c         1420 g          643 t
ORIGIN      
        1 cggcgtcgcg gagcttgatt acatgggcga ggagttctga tgccggcccg gcgaagtaag
       61 gttcgacttc aagaccgggc cggccggcac aggaggcggg ccgaaagggg cgcgggtgcg
      121 gcacaggatt gagaacgtcg agacggggac gtggaaccgg gtcatcgaag acctgaaggc
      181 gtccgggttc gaagaggttt atcgctacgg cgggatggac gccggcattg actacaacag
      241 gtgcgagctt gtgagccgtg ccgacggcga gcttgtcgtc ttcgagtggg acaactggtc
      301 ggaaggcgag ataagggccg agctgccccg gctcgaagcg ctgcgggaaa agtaccggct
      361 ctcggagcct tcggaagttg acgggccgtg agcgaacaga cgagccgtat cacgcacgcg
      421 ctgatgcgcg tcgccgcaga cctcggccac ggcgggccac tctccgaata caaaattgat
      481 tcgggcgagg gcggctacgg cgtgacgctc gccatctcca agcccttccc gtcgcccggc
      541 caaaaccgct tccgttcgcc gagcatgacg gagactctcg cgaaggggcg ccgcgaggtc
      601 gaagagttcc tcgaaaaact ttccgcggag ttcaacgtct ttcggctcgc cgaccttgag
      661 cccaagtatc ctttcctgca cccgaccttt tactccttct gcttccaaga ctccgcgggc
      721 gaaggccacg ccttcgaata caggatcgaa tgctccagcc acctggacga aaggtacgaa
      781 gcactcgtcc gtgagttcga gagcttcttc gagagccgca gggtcttcga taaattcttc
      841 gagagcctgc gcgggtgacc gacgggcgat gggaataccg ctcgacatat tcagcctcta
      901 ccgtttgagt ggcgagggcg cgaactgccg gcaccacctg ctgctgaggg tcgggcgccc
      961 ggccttcagc aacgccgacg agcgggacta cacacgcgcc accgaagccg ccgacggaaa
     1021 ggcgcgcgcc ctgctcgaac aatacgaggc cgaggtgctg gcggcagagt gcgccgggcg
     1081 gcacgcggct gagctcgccg gcgagttgca gtcgcgcccc gtcggcgacg aactgggcga
     1141 ggggcgcggc ggccgctacg tcgagttgtg ggtcgccggg acgcgcttcg gccgcccgtg
     1201 ggtggtgatg gggacggccg ggacggaggc ggagttctgg cgcgcggtcg gggaggatga
     1261 agacctttcg cgcttaagcc ctagcccgcc ggccgaaaag ctgcgggcgt acttcctcgc
     1321 gtgaccggcg cggcggacaa gaagcggggc gcccccgcgt gagagcgaat ctcacgcggg
     1381 ggtaccccaa ttttttgccg aagtcgggcc ggctttacgg gtcaatcacg aggggcgagc
     1441 ttatggtcag accgcccgcc gtggccttaa tccctatggt cttcgccgcg ttcaccggct
     1501 tggtggttac ggggaaggtg gccgactggg tgccggccgg gataacgaca gacgccggga
     1561 cggaggcgac cgacggcgcg ctgctagaga gcgcaacggt gatgttgccc ggcgcggccg
     1621 cgcattcgag cgtgaccgtg ccggtcgagc ccgtcccgcc cttcaagcgg ctcgggctga
     1681 gcgtgagcga actggcgcgt atcggccgaa ccgtcaggct tcgcgtgacg ctgacgccgc
     1741 cggacgaggc gccgacggtt ccggccacgc gcgcgacgac ggggctgatg gtgtacttga
     1801 aggtcttgac cgtctgcccg gccggcacgg tgacgacggc ggggaaggag gccgcggggt
     1861 tgtcgttcgt gatgacgacg gccgcgccgc ccgcgggcgc cggcccttcg agcgtgacct
     1921 tgccctgtag ctccggcgcg cacccgctcg ccaagtcggt tatcgagagg tccgcgacgc
     1981 gggcctgcgc ccgcctgatg gcgaagctcg cgttcgagat gtcgaagaag atgttgccga
     2041 cggcctcgac ctttatgcgc gccctgtccg tctcgacgtc ggggacgttg acggcctgcg
     2101 agccgtcgtt cggcgtcgtc tcggcgagca cgtgcgggaa ggtgagcccg ccgtcaactg
     2161 agagcgagat ccggacgttg gccgcgctga cgggcgccgc gtccgtgccg gccacggccc
     2221 aagtgacggt ctgcgtgctc gcgccctccc actcgacggc cgtgtccggg tgttgcacga
     2281 cgaaggggcc ggcgccggcg tggacgttga cgcgcacgag gtcggagcgc acgccgccgg
     2341 cgtcgccgcg gttatcgcgc acggtgacct ggaagttcat cgtgcgggtt atctgcggca
     2401 gtatctcgcc ggtcaggcac gggcgcggaa gccccgtcgc cgggtcgttc gtccggccgc
     2461 agtcgtaggt cgtgggcggc tggttcgcgt tctcaagtat gtagcgcagg ctcgggaagg
     2521 tgcgcgaggg gctcgtcgtc gggttgtagg agcggaatat ggggcgcgct tggccgtcgc
     2581 cgtcgcggtc gccgttggcg gcgggcggcg ctgccgaggc cgggccgagg tcgtactgct
     2641 cccacaggta ggtcagggcg tcgccgtccg cgtccgaggc cgcggccgtc agcgtgaacg
     2701 gcgtgtcctt cgggatgttg tagtccggcc ctccgtcaac gacgggcgcc gtgttctcgg
     2761 tcgtcgcccg cgcggcgcag gcgttcccgc tcccttgcgt gaaggcgatt atctgttcga
     2821 ggctcttgat gtggaagtac gggtcgctgt tgcgctgcaa gtcctgcgcg cggcagatgc
     2881 cggcgtaggc ctgtatggtc gagccgctgc cgggctcgta ggcggcgccg gccgagcggt
     2941 tgccgcccgc gcagttgtgc gtggagccgt tgaaggtgtg ctgcccgccg aactggtggc
     3001 ccatctcgtg cgccacgtag tctatgtcga aggggtcgcc cacggggttc gacgagcccg
     3061 tgacgccgcc ggccttcgtc gtggcgttgc agggcgagtt caggagcgcg acgcccccgc
     3121 cgcccgtcga gaagacgtgg cctatgtcgt agttgagcgt gcctacgagt gagtcgcaga
     3181 cgacttggtt ctgcctgagc atcaccgagc cgttcgcgtt ctcgtagggg tctagggtcg
     3241 ggtcggtgaa gatgatgagc tcgttgtcaa ccatcaccat gcggacgccg acctcgcgct
     3301 cgtagacgcc gttgacgcgg ttcatcgaag tcaccatgcg cgagagcgcc gcggccacgg
     3361 tgccgcccgc cttctgcgtg tactcgcccg tggcggccag cgccagccgg taggtgcgca
     3421 gcgtcccgcc ccccgcggcc aggttaaccg aggcgggcgc ctccgccgcc tcctccgaag
     3481 gggccgtctg cgcctccggg ttcgcgaggt cgaagtggca ctcgaaggcc tggtcgtcct
     3541 cgccgaggtc gagcttgcgg tagctgatgt agttctccgt gtcgccttcg gcgtaagggt
     3601 ctattaagac cgcgccggag gcggagagga cgaaggcgtg gaagccgtgc ggcgtcacgt
     3661 cgaagcgggc cgtggcggtc gggtcgtcga ggccctgccc gcggtaggtc tttaactccg
     3721 ggtgcttggc ggccagcgcc ggctccatta tcggcgactc ctctacgcgg aaacggctga
     3781 aggaaccgtc cggcatcggc accgacagga cggcctgcga ctgccgcgcc gcggccgtga
     3841 actccagcgg cgccgc
//
LOCUS       DASPKR010000542         3668 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_81479, whole genome shotgun sequence.
ACCESSION   DASPKR010000542 DASPKR010000000
VERSION     DASPKR010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3668)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3668
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81479"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..846
                     /locus_tag="VD968_14525"
     CDS             <1..846
                     /locus_tag="VD968_14525"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HYE15656.1"
                     /translation="KSTQDGWLNRYMQSAPDSKATPFRAVAVAQNLPRSLQGRAPAVA
                     MQTIRDFQIRAGAQGRSAGLQGGFEDIYEQSASEALRGTGRETFEAVNFLKRVNLEQY
                     RPENGAVYPRGRYGEALLQIAQLVKAGVGLEVAFTETGGWDTHRAQGGSRGQLAGLLA
                     QFGAGIKALITDLGPERMRDVVILTMSEFGRTVRQNGTGGTDHGHANAVLVVGGAVRG
                     GKVYGEWPGLRDEQLHEGRDLALTTDFRDVFGEVATRHLGRGDLQKIFPGHAGGPARF
                     RGLLG"
     gene            1011..2258
                     /locus_tag="VD968_14530"
     CDS             1011..2258
                     /locus_tag="VD968_14530"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE15657.1"
                     /translation="MPRRVKFSADLILVCNSLDAGGIERVVATLANEWGRRGRKVCVV
                     TLHDRHRFYALDPAVQHVVLDEAGLIRFAELLKWLAERVGPSRWPKGWPFKLISAPLN
                     WFFSDRHVGLYFLLLLSYQAASLRRALRRVTSPVVVSLGTKVNILTVMACGKLGRRVI
                     ISERGDAERLAGLKGWNSLSRRFYGRADLVTANSRGALRGMSDFVEAGKLAFVPNPLV
                     LPNGGDRVRGDGRETPPYVLVVGRLVWGKAHDVLLEAFARLGAEFEGWRLAVVGDGRL
                     RGALQAQAESLGIAGRVDWHGVVRDPYDFYRAARIFVLPSRNEGMPNALLEAMSCGLP
                     VVVSDGAPGPLELVEDGVTGLVVPVNNAEALASAIRRLAADGALRERLGEAARERVAA
                     YELPQSIAVWESVLGLDKVAGSQ"
     gene            2278..>3668
                     /locus_tag="VD968_14535"
     CDS             2278..>3668
                     /locus_tag="VD968_14535"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE15658.1"
                     /translation="MSYQRWRGSGPESPSLRERVGAMRYVPPFVRLVWQTHRGLTAAM
                     AALRLARAFVPVAVLWVGKLIIDEVVAARGGELVTGRLWRLVAVEFALALAGEALSRA
                     SGLVESLLADLFSNHTSVRLMSHAATLDLYQFEDPSFYDQLERARRQTTGRLGLLAQL
                     LAMAQDALTLVSLSAALLFYSPWLLLLLVVAVLPGFLSEARYASLEYSLLFRWTPERR
                     QLDYLRLLGASDYPAKEVQTFGLAPWLVERYRALSEKFYEENKRLSIRKSVVATALSV
                     VGALGYYGAFAVILVRAVGGAISLGTLTFLVATFSRSRDLIQRLLTGASNIYQQCLYL
                     KDLFDFFETRPTITSPAGAPPVPRPMREGFVFESVGFRYPGSEEWALRGVNFRLRPGE
                     RVALVGGNGAGKTTLVKLLARLYDPTEGRITLDGRDLREYDLASVRRSVGVIFQDFVR
                     YDLRFDENIGVGE"
BASE COUNT          522 a         1271 c         1284 g          591 t
ORIGIN      
        1 aagtccacgc aggacggctg gctcaaccgc tacatgcagt cggcgcccga ctcgaaggcc
       61 actccgttcc gcgccgtcgc cgtggcgcag aacctcccgc gcagcttgca ggggcgcgcg
      121 ccagcggtcg cgatgcagac catccgagac ttccagatac gcgcgggcgc gcaaggccgg
      181 tcggcaggcc ttcagggcgg cttcgaggac atatacgagc agagcgcgag cgaggcgctt
      241 cgaggcacgg gccgcgagac cttcgaggcc gtcaactttc tcaagcgcgt gaacctcgag
      301 cagtaccggc ccgagaacgg cgccgtctat ccgcgcggtc gctacggcga ggcgctcctg
      361 caaatcgcgc agctcgtcaa ggcgggcgtc gggctcgaag tcgctttcac ggagactggc
      421 ggctgggaca cgcaccgcgc gcagggcggc tcgcgcggcc agctcgccgg tctgctcgcg
      481 cagttcggcg cgggcattaa ggcgctcatc acagacctcg gccccgaaag gatgcgcgac
      541 gtcgtcatac tcaccatgtc cgagttcggc cgaaccgtcc ggcagaacgg gacgggcggc
      601 accgaccacg gccacgcaaa cgcagtgctg gtcgtcggcg gcgcggtgcg cggcggcaag
      661 gtctatggcg agtggccggg cctgcgcgac gagcaactgc acgaggggcg cgacctcgcc
      721 ctgacgacag acttccgcga cgtgttcggc gaagtcgcca ccaggcacct cggccgcggc
      781 gaccttcaga agattttccc cggccacgcg ggcggccccg caaggttccg cggcctgctc
      841 ggctgagacg gggcgcaggc gggcgccagt caggggcgca ggctcacgct cgggcctgcg
      901 ccccttattc tcgccgtgcg gtcgcgcgtc gcgcgcggaa tcgggccgag cccggtgtgc
      961 tatcatcacc tccgatcttc cagcccacga gtcgcggtcg cgtgctcggt atgcccagac
     1021 gggtgaaatt ctcggccgac ctcatactcg tctgcaatag cctcgacgcg gggggcatcg
     1081 agcgagtcgt cgcgaccctc gcaaacgagt ggggccggcg cgggcggaag gtgtgcgttg
     1141 tcactctgca cgaccgtcac cgcttctacg cgctcgaccc ggccgttcaa cacgtcgtcc
     1201 tcgacgaggc cgggcttatc cgcttcgccg agctcctcaa gtggctcgcg gagcgcgtgg
     1261 ggccgtccag gtggccgaag ggctggccct tcaaactgat ctccgccccc ctgaactggt
     1321 ttttctccga ccgccacgtc ggcctctact tcctgctcct cctcagctac caagccgctt
     1381 cgctcaggcg cgctctgcgg cgcgtaacct cgcccgtcgt cgtgtcgctg ggcacgaagg
     1441 tcaacatcct gacggtcatg gcgtgcggga agctcgggcg gcgcgtaatc atttcggagc
     1501 gcggcgacgc agaacggctc gcgggcctca agggctggaa ctccctgtcg cgcaggttct
     1561 acggcagggc cgacctcgtg acggccaact cgcgcggggc gctgcgcggc atgagtgatt
     1621 tcgtcgaggc cggcaagctg gccttcgtcc ccaacccgct cgtgctcccg aacggcggcg
     1681 accgcgtcag aggcgacggg cgcgagacgc ccccttacgt cctcgtcgta gggcggctcg
     1741 tgtggggcaa ggcccacgac gtgctgcttg aagccttcgc gcgactcggg gcagagttcg
     1801 aggggtggcg gctcgcggtc gtcggcgacg gccggctaag gggcgctttg caggcgcagg
     1861 ccgagagcct cggtatcgcg gggcgtgtgg actggcacgg cgtcgtgcgc gacccatacg
     1921 acttctaccg ggccgcgcgc atcttcgtcc tgccctcccg caacgagggc atgcccaacg
     1981 cgctgctcga ggcgatgagc tgcgggctgc ccgtcgtcgt gagtgacggc gcgccggggc
     2041 cgctcgaatt ggtggaggac ggcgtgacgg gcctggtcgt ccccgtcaac aacgccgagg
     2101 cgctcgcctc ggcgatccgc cggctcgcgg ccgacggcgc gctccgcgag cgcctgggag
     2161 aggcggcgcg cgagcgcgtc gcggcctacg agctgcccca gtccatcgcc gtctgggagt
     2221 cagtcctcgg gctggataaa gtagccggta gccagtagcc taccggctac tgcatttatg
     2281 tcttaccaga ggtggagagg gtcggggccg gagtcgccgt cactgcgcga gcgcgtgggg
     2341 gcgatgcggt acgtgccgcc gttcgtgagg ctcgtgtggc agacgcacag ggggctgacg
     2401 gcggcgatgg ccgcgctcag gctcgcgcgc gcgttcgtcc ccgtagcggt gctgtgggtg
     2461 ggcaagctaa tcatagacga agtcgtcgcg gcgcgcgggg gcgagctggt gacggggcgc
     2521 ctgtggcggc tggtcgccgt ggagttcgcg cttgcgctcg cgggcgaagc gctctcgcgg
     2581 gcctcgggcc tcgtcgagag ccttctggca gacctcttct cgaaccacac gagcgtcagg
     2641 ctgatgagcc acgccgccac gctcgacctg taccagttcg aagacccctc gttctacgac
     2701 cagctagagc gcgcccgccg ccagacgacg ggcaggctcg ggctgctcgc gcagcttctc
     2761 gcgatggcgc aggacgcgct gacgctcgta tcgttgagcg ccgcgctgct cttctacagc
     2821 ccgtggctcc tgctgctgct cgtcgtcgcg gtgctgcccg gcttcctgag cgaggcgcgc
     2881 tacgcctcgc tcgaatactc cctgctcttc cgctggacgc ccgagcggcg gcagctcgac
     2941 tacctgcggc tgctcggcgc gagcgactac ccggcgaagg aggtgcagac cttcgggctc
     3001 gcgccgtggc tcgtcgagcg ctaccgcgcg ctgtcggaga agttctacga ggagaataag
     3061 cgcctctcga tacgcaagag cgtcgtggcg acggcgctct cggtcgtcgg cgcgctcggc
     3121 tactacggcg cgttcgccgt catactcgtc cgcgccgtcg gcggggcgat aagcctgggg
     3181 acgctgacct tcctcgtcgc gaccttctcg cgcagccgcg acctcataca gcgcttactc
     3241 accggcgcga gcaacatcta ccagcagtgc ctttatctta aagacctctt cgacttcttc
     3301 gagacccgcc cgacgataac ctcgcccgcg ggcgcgcccc ccgtgccgcg ccccatgcgc
     3361 gagggcttcg tcttcgagtc ggtcggcttc cgctaccccg gctcggagga gtgggcgttg
     3421 cgcggcgtta atttccgtct gcggccgggc gagcgcgtgg cgctagtcgg cggcaacggg
     3481 gcggggaaga ctacgctggt caagctgctc gcgcgcctct acgacccgac cgaggggcgc
     3541 atcacgctcg acgggcgaga cctgcgcgag tacgaccttg cgtccgtgcg ccgcagcgtc
     3601 ggcgtcatct tccaggactt cgtgcgctac gacctgcgct tcgacgagaa cataggcgtc
     3661 ggcgagat
//
LOCUS       DASPKR010000543         4712 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1761933, whole genome shotgun sequence.
ACCESSION   DASPKR010000543 DASPKR010000000
VERSION     DASPKR010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4712)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4712
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1761933"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1884
                     /locus_tag="VD968_14540"
     CDS             <1..1884
                     /locus_tag="VD968_14540"
                     /inference="COORDINATES: protein motif:HMM:NF013125.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HYE15659.1"
                     /translation="LAMFETPYSRTAPASPLRRLLAPALTFVLTLAWAAASAPTAAAQ
                     PTGSPDLVISQVYTRGGETGAVFRHDFIEIFNRGNTTVNLSDYTLQFLANVAPGPGGN
                     PPGGFGAVAVRVVSSGGPVNINPGQYWLYQFGSSGNNGAPLPVTADATNEQLNLPGNG
                     GRVALVKGLTQLVQFGCPVAVDASVADFYGYGATTCAEGSFPGAAPSSLTAALRNSNG
                     CDDTDSNTADFTLTTPSPRNSSSPTNVCGFPAATSSLQFESAAASTNEGSGSVEIFVT
                     RAGDVSAPASVQYATSDDTATERADYTTALGTLHFAAGETRKAFRVLITDDSRVEGTE
                     SLTLALGYQSAGTEIDARNIMTLSIVDNDGTGGVPSLTDTSNFFVRQHYADFLSRDPD
                     TNGFNFWVNQIEECGADAQCREVRRINVSAAFFLSIEFQQTGYLAYRFYQAAFPESAS
                     RPRSFPRYRELWRDMREIGRDVIVGVGQWQQQLEANKQAYAAEFVARPEFRIQYPAAT
                     APDVFVDTLNANAGGVLSQAERDALVAELTANNTDAGRASVLRKVAEDEDFIRAEFNR
                     AFVLLQYFGYLRRNPTDPPDTGFGGYDFWLGKLNQFNGNFIESEMVKAFLSSIEYRQR
                     FAP"
     gene            2092..>4712
                     /locus_tag="VD968_14545"
     CDS             2092..>4712
                     /locus_tag="VD968_14545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15660.1"
                     /translation="MFTCPLSGRRGASARRTFFAALVACCLLLQQSASAFAPQTNVRK
                     RAGAAPSLGRKGAKPSVPTGLLVPGTASTVFINEIHYDNTGTDAGEFIEVAGPAGTNL
                     TGWSIVLYNGNGGASYDTDALTGTIPSQQGGYGTVSISYPSNGIQNGSPDGVALVDGT
                     TLVQFLCYEGTFAATNGPANGQTCTDIGVSEDGTEATGNSLQLTGSGDNYGDFTWTGP
                     TAATQNSPNTGQTFAAATPTPTPTPGGLPALSIDDVSQDEGDSGQTNFTFTVSSDQTS
                     DGSIVFNICTQDGTAQDASGTGEDDDYNLFCLTNQSIPNGQTSSQFSVQVNGDTEQES
                     DETFLVNITQLSGATAADGQGVGTIQNDDIALVLISQVQGSGASSPLVGQTVSVRGVV
                     TLIKSNGFFVQEEVGDNDSDPNTSEGVFVFTSSAPPISVGDNVTVTGEVVEFNGLTEI
                     STPGGGIVVTNSTGNTLPTAVTIDTTILDPAAGPTQPQLEKYEGMRMTAASLTTVAPN
                     DNFFDVYTVLSSVARPMREPGIPASDPVPPDPTSGTPDPNIPNWDENPERLIVDTNGR
                     AGSTNTAYTSNVTFTNVAGPLDFSFGAYRLVPEAALTASANMSAVPVPTPAAGEFLVA
                     GYNIENFNNDATQREKAALTIRDVMHLPAIIGVAEIFDLADLQELAAEVDLMSGGTTA
                     YEARLVEQDGTSEDNDQDVGFLVDTARVSITSTTVERASDTFINPNDGQPETLHDRPP
                     FVLRAVVDPSGAALPVIVVVNHTRSFIDIELVAGEGARVRAKRKAQAESIAGLLQELQ
                     TNNPGVPVIAVGDYNAFQFNNGYDDPVSVMKGNPTPDDQIVVDQSPDVVDPNFANLID
                     DLPAAEQYSFIFEGTPQA"
BASE COUNT          875 a         1746 c         1409 g          682 t
ORIGIN      
        1 ctcgcgatgt ttgaaacgcc ctactcacgg acggcacccg cctccccgct tcgcagactg
       61 ctcgcgcccg cgctcacgtt cgtgctcacg ctcgcgtggg cggcagcctc cgcgccgacg
      121 gccgcggcgc agcccaccgg ctcgcccgac ctcgtcatca gccaggtcta tacgcgcggc
      181 ggcgagacgg gcgccgtctt ccgccacgac ttcatagaga ttttcaaccg cggcaacacg
      241 accgttaacc tctccgacta cactctacag ttcctcgcca acgtcgcgcc cggccccggc
      301 ggcaacccgc ccggcggctt cggcgcagtt gccgtcagag tcgtctcctc aggcggccct
      361 gtcaacatca accctggcca gtactggctt taccagttcg gcagcagcgg caacaacggc
      421 gcgccgctgc ccgtcacggc cgacgcgacc aacgagcagc tcaacctgcc cggcaacggc
      481 ggccgcgtcg cgctcgtcaa ggggctaacg cagctcgtgc agttcggctg ccccgtcgcc
      541 gtggacgcga gcgtcgccga cttctacggc tacggcgcga ccacctgcgc cgagggctcg
      601 ttccccggcg cggcgccgtc ttcgctgacc gcggcgctca ggaactcgaa cggctgcgac
      661 gacacggaca gcaacacggc cgacttcacg ctcacgacgc cgagcccgcg caactcttca
      721 tcccccacga acgtgtgcgg cttcccggct gcgacgagca gcttgcagtt cgagtccgcg
      781 gccgccagca cgaacgaggg ctcgggcagc gtcgaaatct tcgtcacgcg cgcgggcgac
      841 gtgtccgccc cggcctccgt gcagtacgcg acgagcgacg acacggccac cgagcgcgcc
      901 gactacacga cggcgctcgg cacgctgcac ttcgcggccg gcgagacgcg caaggcgttc
      961 cgcgtcctca tcaccgacga ctcgcgcgtc gaaggcaccg agagcctcac gctcgcgctc
     1021 ggctaccaga gcgccggcac cgagatagac gcgcgcaaca taatgactct cagcatcgtg
     1081 gacaacgacg gcacgggcgg cgtcccgagc ctgactgaca cctcgaactt cttcgtccgc
     1141 cagcactacg ccgacttcct ctcgcgcgac cccgacacga acggcttcaa cttctgggtc
     1201 aaccagatag aggagtgcgg cgcggacgcg cagtgcaggg aagtgaggcg cataaacgtc
     1261 tcagcggcct tcttcctctc catagagttc cagcagaccg gctacctcgc ctaccgcttc
     1321 taccaggccg ccttccccga gagcgcgtcg cgcccgcgca gcttcccgcg ctaccgcgag
     1381 ctttggcgcg acatgcgcga gatagggcgg gacgtgatag tgggcgtcgg ccagtggcag
     1441 cagcagttgg aggcgaacaa gcaggcgtac gccgcggagt tcgtcgcgcg ccccgagttc
     1501 aggattcagt acccggcagc cacggcgccg gacgttttcg ttgacacgct gaacgcgaac
     1561 gcgggcgggg tgctatcgca ggccgagcgc gacgcgctcg tcgccgagct tacggccaac
     1621 aacacggacg ccggccgcgc ctccgtgctc aggaaggtgg ccgaggacga ggacttcata
     1681 cgcgccgagt tcaaccgcgc cttcgtcctg ctgcaatact tcggctacct tcgccgcaac
     1741 ccgacagacc cgcccgacac gggcttcggc ggctacgact tctggctggg gaaactcaac
     1801 cagttcaacg gcaacttcat cgagtccgag atggtcaagg cgttcctctc gtccatcgag
     1861 taccggcagc gcttcgcgcc gtgacgcggg cagagactgc gggttaaacc gggaggggtg
     1921 acgacggccg tgccgtcgtc acccctcttc gactttacgg cttgacgccc gcgcgcggca
     1981 tagagtaaaa gcattcccgc cgtacccttc gagaattcta gcgaaccctg cccagggaat
     2041 tacgccgaag tcgcgttccc aagccgaaca agagagaaag gatcatcccc cgtgttcact
     2101 tgccccctct ccggacgccg aggagcgtct gcccgccgca ccttcttcgc cgcactcgtc
     2161 gcctgctgcc tgctgctcca gcagtcagcc tccgccttcg cgccgcagac gaacgtgaga
     2221 aagcgggctg gggccgcgcc gtcgctcggg aggaagggcg ctaagccgtc ggtcccgact
     2281 ggcctgctcg tgcccggcac ggcctcgacc gtcttcatca acgagattca ctacgacaac
     2341 accggcaccg acgcgggcga gttcatagag gtcgccgggc ctgccggcac aaaccttacg
     2401 ggctggtcaa tcgtgctcta caacggcaac ggcggcgcgt cttatgacac ggacgctctg
     2461 accggcacta tcccgtcaca gcagggcggc tacggcacgg tctcgatctc ttacccgtcg
     2521 aacggcatac agaacgggtc gccggacggg gtggccctcg ttgacgggac gaccctggtt
     2581 cagttcctct gctacgaagg cacgttcgcg gcgacgaacg gcccggccaa cggccagacc
     2641 tgcaccgaca taggcgtctc cgaggacggc actgaggcta cgggcaactc actacaactc
     2701 acgggcagcg gcgacaacta cggcgacttc acatggacgg ggccgacagc cgccacgcag
     2761 aactccccga acaccggcca gaccttcgcc gccgcgacgc cgacgccgac gccgacgccc
     2821 ggcggcttgc ccgctctctc cattgacgac gtgtcgcagg acgagggcga ctccggccag
     2881 accaacttca ccttcaccgt cagcagcgac cagacctccg acggcagcat cgtcttcaac
     2941 atctgcacgc aggacggcac ggcgcaggac gcgagcggca cgggcgagga cgacgactac
     3001 aacctgttct gcctaaccaa ccagagcatc ccgaacgggc agacctcctc gcagttctcc
     3061 gtccaagtca acggcgacac cgagcaggaa tcggacgaga ccttcctcgt caacataacc
     3121 cagttgtcgg gcgcgaccgc cgccgacggg cagggcgtcg gcaccatcca gaacgacgac
     3181 atcgcgctcg tgctcatcag ccaagtgcag ggcagcggcg cgtcgtcgcc cctggtcggc
     3241 cagaccgtca gcgtgcgcgg tgtcgtcacg ctcatcaaat cgaacggctt cttcgtgcag
     3301 gaggaggtgg gcgacaacga ctccgacccg aacacctctg agggcgtctt cgtcttcacc
     3361 tcatcggcgc cgcccatctc cgtcggcgac aacgtgaccg tcacgggtga ggtcgtagag
     3421 ttcaacggcc tgaccgagat aagcacgccg ggcggcggca tcgtcgtcac caacagcacc
     3481 ggcaacacgc tgcccacggc cgtcacgatt gacacgacca tactcgaccc ggcggcgggc
     3541 cccacgcagc ctcaactcga aaagtacgag ggcatgcgca tgacggccgc ctcgctcacc
     3601 acggtcgcgc ccaacgacaa cttcttcgac gtttacacgg tgctttcgag cgtcgcgcgc
     3661 cccatgcgcg agcccggcat acccgcgagc gaccccgtcc cgccggaccc gacctcgggc
     3721 acacccgacc cgaacatccc gaactgggac gagaaccccg agcggctgat agttgacacg
     3781 aacggccgcg ccggctcgac caacacggcc tacacctcga acgtcacttt cacgaacgtc
     3841 gcggggccgc tcgacttcag cttcggcgct taccgcctcg ttcccgaggc cgcgctcacg
     3901 gcctcggcca acatgagcgc cgtccccgtc cctacgcccg cggcgggcga gttcctcgtg
     3961 gccggctaca acatcgagaa cttcaacaac gacgccacgc agcgcgagaa ggcagcgctc
     4021 accatacgcg acgtgatgca cctgcccgcc atcatcggcg tcgcggagat attcgacctc
     4081 gcagacctac aggagctggc cgccgaggtt gacctcatgt ccggcggcac gacggcctac
     4141 gaggcgcgcc tcgtcgagca ggatggcacg agcgaggaca acgatcagga cgtcggcttc
     4201 ctcgtggaca ccgcgcgcgt ctccatcacg agcaccacgg tggagcgcgc cagcgacact
     4261 ttcatcaacc cgaacgacgg ccagcccgag acgctacacg accggccgcc cttcgtgctg
     4321 cgcgccgtag ttgacccttc gggcgcggcg ctgcccgtca tcgtcgtcgt caaccacacg
     4381 cgctcgttca tagacattga gctcgtggcg ggcgaggggg cgcgcgttcg cgccaagcgc
     4441 aaggcgcagg ccgagtccat cgccgggctc cttcaggagc tacagacgaa caaccccgga
     4501 gtccccgtca tcgcggtcgg cgactacaac gccttccagt tcaacaacgg ctacgacgac
     4561 cccgtcagcg tcatgaaggg caacccgacg cccgacgacc agatagtcgt tgaccagagc
     4621 ccggacgtcg ttgacccgaa cttcgccaac ctcatagacg acctgcccgc ggccgagcag
     4681 tacagcttca tcttcgaggg gacgccgcag gc
//
LOCUS       DASPKR010000544         8447 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1893254, whole genome shotgun sequence.
ACCESSION   DASPKR010000544 DASPKR010000000
VERSION     DASPKR010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8447)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8447
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1893254"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..969
                     /locus_tag="VD968_14550"
     CDS             <1..969
                     /locus_tag="VD968_14550"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HYE15661.1"
                     /translation="NSYIGGNIAENAGGIRSAKYGVTKHYVMGLEVVLPTGDIIRTGG
                     LTSKNVVGFDLTGLMCGSEGMLGIITEATLRLLPLPEATRTVRATFKTMAAACACPPA
                     FTRARVTPVAIEVLDRNAIRAVESEFAFGIGAEAGALLLVSVDGPREEVERAARVVEE
                     VVRAAGGYDVLRSGTREEEERLWDVRRALSPAIKKFGTLKFNEDVVVPRSRVPELVER
                     VEEIGKRHSTFVVNFGHLGDGNIHVNFMCERSDADAVARARAAVRETFAAAVSLGGTI
                     SGEHGIGYVKAPYLPMALGAETIEAMRRVKRALDPNGVLNPGKMFV"
     gene            984..1568
                     /locus_tag="VD968_14555"
     CDS             984..1568
                     /locus_tag="VD968_14555"
                     /inference="COORDINATES: protein motif:HMM:NF024319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HYE15662.1"
                     /translation="MLGVLIELQRLKRLDRTGWVLRGLPPGAESVAAHSYGVALAAML
                     LADECAARGARVDAERVLRLALLHDLAETRTGDMPRTVADYYGPGERKRAERAAFDDV
                     MRGGLGAGRAARYSGLHEDYEERTSVEARIVKAADVIDLLAQALAFERAGARGLGEFW
                     EGASERDFGLEGACRDVVAEAIAALVAARREGDE"
     gene            1601..2035
                     /locus_tag="VD968_14560"
     CDS             1601..2035
                     /locus_tag="VD968_14560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15663.1"
                     /translation="MLDWMTQTLDSWGLTWGQVLLGVLFSVVTFVASIAVVTVVLVKL
                     PRNYFHSSHAREFLTQRHPVLRAVGVFFKNLFGLVLVGFGVLMSLPGVPGQGVLTILL
                     GIMLLDFPGKRALEVRLVSRPKVFRAINGLRARFDKPPLILD"
     gene            2141..3208
                     /locus_tag="VD968_14565"
     CDS             2141..3208
                     /locus_tag="VD968_14565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15664.1"
                     /translation="MPFLQMTQSWSAARALPRLIVLLAAVSLSAGCGLFRTKSKIAVP
                     SKLTPLAVADTRQLLEEINRQAGVQALNGKVDLTFLDTSFASCGLADLYREVEGRVVV
                     QRPGHVYVLVQAPLGIKIAEMSSDGRRFWAAVYQGDERYKRFVTGTNTAEYERLEANG
                     PSPDCTGDGKRREQAMQRATVTALSSMRPQHFTDALLVPPAEGSGLLYAQSESFEEEE
                     DTRRGAKKGARVVRGYYVLAEIDPSGDGPGRARILRRFWFDRVGQSPRLARVQSYNPR
                     GELITDVRYGTPQGFGGEGAPRPVLPSQIELTRPQESYALRITFQDPGSVKVDQPLPP
                     DAFVLKNSSDLKEVDLDARKK"
     gene            3286..4383
                     /locus_tag="VD968_14570"
     CDS             3286..4383
                     /locus_tag="VD968_14570"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE15665.1"
                     /translation="MDSLVTANVRQRPVRALVSAAGVALGVCLVMLFTGLARGMSNDL
                     QRRSSNLRAEIVFTRPGSTELMSSSANLSAKYAEELVKIEGVERAVPAIRYFSQGKRG
                     FGLEQLEGVDWEPFAAMNGMTLVSGRAPAALNEVVVDETKARNNDLTVGSTIELFGNQ
                     PYVVTGIYTPEAGPRVKMSLAAMQDALEAPGKCTWVYVKVKNPEQAVEMARRIDEALP
                     GNKIQLTRDIITNIEKSIPYLGVFLNTLVALSAVVSGLVVMLAMYTTITERTREIGVL
                     KALGASRGFIVGQIEKEAILISVIGVAAGFAVSLLAGSLIQRSSGLMFEHSWRWAVTA
                     ALIGLLGGALGALYPAARAANLDPVSALAYE"
     gene            4383..5084
                     /locus_tag="VD968_14575"
     CDS             4383..5084
                     /locus_tag="VD968_14575"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE15666.1"
                     /translation="MRKILKAENLTKVYRTAGGVDVHALRGVSLEVEEGEFLAIMGPS
                     GCGKSTMLHLLGGLLTPTSGRIVIDDEDLTAATDARRTDIRRRKIGFVFQRFNLFPTL
                     TAEGNLRLAERIHGAGDKKGDPERRREILRLLKLEDKMHHKPLELSGGEQQRVALARA
                     VVNRPAIILADEPTGNLDTENSAIVLNMFQEMNYRFNQTIIMITHNPEAAAMCRRIVQ
                     MRDGLIVAPAPRVQI"
     gene            5183..5503
                     /locus_tag="VD968_14580"
     CDS             5183..5503
                     /locus_tag="VD968_14580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15667.1"
                     /translation="MAFWPYGRTTWQYDVLCVAILAFVFLTPKSWFERGKLSCPPAHQ
                     KGLEAAQKLLIRTSVSALAQPDAHDIERCARSITGRPGLRVKGWRELKSTDGRTVAFE
                     VDTE"
     gene            5572..6273
                     /locus_tag="VD968_14585"
     CDS             5572..6273
                     /locus_tag="VD968_14585"
                     /inference="COORDINATES: protein motif:HMM:NF015510.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer-membrane lipoprotein carrier protein LolA"
                     /protein_id="HYE15668.1"
                     /translation="MKKFFTLFAAALMLAASLSVAPSPAQAQGPGLVSSILNKMERNR
                     RETRSLRAGMVMQKYNAQLRDYDMSFGEVKYVPGQGRDVCVRVDWSKPAREHLASCQG
                     QYTLYRPRLNQAIQGSTKSRSKNTRVNGVLSFALGASGAQLRSQYNVEPVGEGTLDNG
                     VHFWLLKFTPRGRGEFQYAEVWVGDDGMPVQTRVTEHNGDSTLVRLNNVQKNVGVSPD
                     EFKINLGAGVKIVKG"
     gene            6472..7491
                     /locus_tag="VD968_14590"
     CDS             6472..7491
                     /locus_tag="VD968_14590"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HYE15669.1"
                     /translation="MIKRSTHLKLKLREAAFIARGLMSSRHPVLAHVIPMRRCNLACT
                     YCNEFDKVSDPVPLEEMRRRLDKLADLGTSIITISGGEPLMHPDLDQIIRRIRERGMI
                     AGLISNGYYMTPERIRRLNGAGLQHLQISIDNLEPDEVSKKSLKNLDKKLQNLAEHAD
                     FHVNINSVIGGGIKNPEDALVIARRAQELGFTTTVGVIHDGHGILKPLAERERAVYDE
                     LKRTSKSDYARLGWFQDNLAAGKPNDWRCRAGARYLYICEDGLVHYCSQQRGTPGIPL
                     EQYTQADIDREYKTEKWCAPLCTVACAHKVAILDNWRDPQKGSGQEIAPQRLRDAIMR
                     TLRAG"
     gene            complement(7531..8301)
                     /locus_tag="VD968_14595"
     CDS             complement(7531..8301)
                     /locus_tag="VD968_14595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15670.1"
                     /translation="MAADWQISFGDSAELLRPAYFALSAILSTLVLHDARRRVGFGPP
                     SVAAWALLVLAFPPVFLPLYLAARLFTSDAATSTSTQDDGAQTAGGEVDEKAAVPPSR
                     ARGRSRGVVPAYALTLVAIFAAYFYADYGSFDAHMARAERAKLYNRPARAVEEYRAAL
                     AVREDAHARKLLGLELLAAGRAEEALAEFRAAEAGGEPDAALAFHIARALDALGRGAE
                     AAESYRRFINSGECAQEAPPPPCARAAERLASPEGKLD"
BASE COUNT         1471 a         2832 c         2833 g         1311 t
ORIGIN      
        1 aactcttaca tcggcggcaa catcgcggag aacgcgggcg gcatacgctc ggcgaagtac
       61 ggcgtgacga agcactacgt catgggcctg gaagtcgtgc tgccgaccgg ggacatcatc
      121 cgaacggggg gcctgacgag caagaacgtc gtcgggttcg acctgacggg gctcatgtgc
      181 ggctcggagg ggatgctcgg cataatcacg gaggcgacgc tcaggctcct gccgctgccc
      241 gaggcgacgc gcaccgttcg cgccacgttc aagacgatgg ccgcggcctg cgcctgcccg
      301 cccgccttca cgcgggcgcg cgtcacgccc gtcgcgatag aggtgctcga caggaacgcg
      361 atacgggcgg tcgagtcgga gttcgccttc gggataggcg cggaggctgg cgcgctcctg
      421 ctcgtctcgg ttgacggccc ccgcgaggag gtcgagcgcg ccgcgcgcgt cgtcgaggag
      481 gtggtgcgcg cggcgggcgg ctacgacgtg ctgcgctccg ggacgcgcga ggaggaggag
      541 cgcctgtggg acgtgcggcg ggcgctgtcg cccgcgatta aaaagttcgg cacgctcaag
      601 ttcaacgagg acgtggtcgt gccgcgctcg cgcgtccccg aactcgtcga gcgcgtcgag
      661 gagataggga agaggcacag cacgttcgtc gtcaacttcg gccacctcgg cgacggcaac
      721 atccacgtca acttcatgtg cgagcgctcc gacgccgacg ctgtcgcgcg cgcgcgcgcg
      781 gccgtgcgcg agaccttcgc cgccgcggtg agcttaggcg gcacgataag cggcgagcac
      841 ggcatcggct acgtcaaggc cccgtacctt ccgatggccc tcggcgccga gaccatcgag
      901 gccatgcgcc gcgtcaaacg cgccctcgac ccaaacggcg tgctcaaccc cggaaagatg
      961 tttgtctaag ctgaccgcta atcatgctag gcgtccttat cgaacttcag cggctcaagc
     1021 ggctcgaccg gacgggctgg gtgctgcgcg ggctgccgcc gggcgcggag tcggtagcgg
     1081 cacactccta cggcgttgcg ctggcggcga tgctgctggc cgacgagtgc gcggcgaggg
     1141 gcgcgcgcgt tgacgccgag cgcgtgctga ggctcgccct gcttcacgac ctggcggaga
     1201 cgcgcacggg cgacatgccg cgcacggtgg ccgactacta cggccccggc gagcgcaagc
     1261 gcgccgagcg cgcggccttc gacgacgtga tgcgcggcgg gctcggggcc gggcgagccg
     1321 cgcgctactc ggggctgcac gaggactacg aggagcgcac gagcgtcgag gcgcggatag
     1381 tgaaggcggc cgacgtgatt gacctgctcg cgcaggcgct cgccttcgag cgggcgggcg
     1441 cgcgcggcct cggggagttc tgggagggag cctcggagcg tgacttcggc ctggaaggag
     1501 cttgccgcga cgttgtcgcc gaggccatag ccgcgctcgt cgcggcgagg agagaaggcg
     1561 acgagtagaa ggcggccggc ggccacttcc ttttcctttt atgctcgact ggatgacgca
     1621 aacgctggac tcctgggggc tgacgtgggg gcaggtgctc ctcggcgtgc tcttctcggt
     1681 cgtgacgttc gtcgcgagca tcgccgtcgt gacggtcgtg ctggtgaagc tgccgcgcaa
     1741 ctacttccac tcgtcgcacg cgcgcgagtt cctcacacag cgccaccccg tgctgcgcgc
     1801 cgtcggcgtc ttcttcaaga acctgttcgg gctggtgctg gttggcttcg gcgtcctgat
     1861 gtccctgccg ggagtgcccg gtcagggcgt cctcacgata ctgctcggca taatgctttt
     1921 ggacttcccc ggcaagcgcg ccctggaagt ccgcctcgtc agccgcccca aagtcttccg
     1981 cgccatcaac ggccttcgcg cgcgcttcga caagccgccg ctcatactcg actgacgcga
     2041 gcggccccgg cgcgcgcttg cgttgacaag gcggaagcgc gtttgttagc ttcccttgac
     2101 tgatttaccc aatatttttg ggggcgaccg ccgagcaatc gtgccttttc ttcagatgac
     2161 gcagtcgtgg agcgccgcac gggccttgcc gcgcctgata gtgctgctgg ccgccgtctc
     2221 gctctccgcg ggctgcggcc tcttcaggac gaagagcaag atagcggtgc cgtcgaagct
     2281 cacgccgctc gcggtcgccg acacccgcca gctcctcgaa gagataaacc ggcaggccgg
     2341 cgtgcaggcc ctcaacggca aggttgacct gaccttcctc gacacctcct tcgcctcgtg
     2401 cgggctcgca gacctttacc gcgaggtcga ggggcgcgtc gtcgtgcaga ggcccggcca
     2461 cgtttacgtc ctcgtgcagg cgccgctcgg cataaagata gcggagatga gctcggacgg
     2521 gcggcggttc tgggccgcgg tctatcaggg cgacgagagg tacaagcgct tcgtgacggg
     2581 gacgaacacg gccgagtacg agcggctgga ggcgaacggc ccgtcgcccg actgcacggg
     2641 cgacggcaag cggcgcgagc aggccatgca gcgcgcgacc gtcacggcgc tctcgagcat
     2701 gcgcccgcag cacttcaccg acgcgctgct cgtcccgccc gccgaaggct cggggctgct
     2761 atacgcgcag tccgagtcgt tcgaggagga ggaggacacg cggcgcggcg ctaagaaggg
     2821 cgcgagggtc gtgcgcggct actacgtgct cgcagaaata gacccgtcgg gcgacgggcc
     2881 gggccgcgcg cgcatactcc gccggttctg gttcgaccgc gtggggcagt cgccgcgcct
     2941 ggcgcgcgtg cagtcctaca acccgcgggg cgagctgata acggacgttc gctacggcac
     3001 cccgcagggc ttcggcggcg agggcgcgcc gcggcccgtc ctgccgtcgc agatagagct
     3061 gacgcgcccg caggagagct acgcgctgcg cataacgttc caggaccccg gctccgtcaa
     3121 ggtggatcag ccgctgcccc ccgacgcttt cgtcctgaag aactcctccg acctgaagga
     3181 agtggacttg gacgctagga agaaatagat gtcggaggcc ggatgctgga agtcagttaa
     3241 gcgcgctctc cagcatccgg catctggcat ccagcatctg cttttatgga cagccttgtc
     3301 acggcgaacg tgaggcagag gcccgtgcgc gctctggtga gcgcggcggg cgttgcgctg
     3361 ggcgtctgcc tggtgatgct cttcacgggg ctggcgcgcg gcatgtcgaa cgacttgcag
     3421 cgccgctcgt cgaacctgcg ggccgagata gtgttcacgc gccccggctc gaccgagctg
     3481 atgagctcat cggcgaacct gagcgcgaag tacgccgaag agctcgtgaa gattgagggc
     3541 gtcgagcgcg cagtccccgc catacgctac ttctcgcagg gcaagcgcgg cttcggcctc
     3601 gaacagctcg aaggagttga ctgggagccg ttcgcggcga tgaacggcat gacgctcgta
     3661 tcggggcgcg cgcccgcggc cctgaacgaa gtcgtcgtgg acgagacgaa ggcgcgcaac
     3721 aacgacctga ccgtcgggag caccatcgag cttttcggca accagcccta tgtcgtcacc
     3781 ggcatctaca cgcccgaggc ggggccgcgc gtcaagatgt ccctggccgc gatgcaggac
     3841 gcgctcgagg ctccgggcaa gtgcacgtgg gtctatgtga aggtcaaaaa cccggagcag
     3901 gcggtcgaga tggcgcgccg cattgacgag gcgctgcccg gcaacaagat tcagctcacg
     3961 cgcgacatca tcacgaacat agagaagagc atcccgtacc tcggcgtgtt cctgaacacg
     4021 ctggtcgcgc tctcggccgt ggtgagcggg ctcgtggtga tgctcgccat gtacacgacc
     4081 atcacggagc gcacgcgcga gataggcgtg ctcaaggcgc tcggcgcctc gcgcggcttc
     4141 atcgtcggcc agatagagaa ggaggcgatt ctcataagcg tcatcggcgt cgccgcgggc
     4201 ttcgccgtct cgctcctggc cggcagcctc atacagcgct cttcgggcct gatgttcgag
     4261 cacagttggc gctgggccgt gacggccgcg ctcatagggc ttctgggcgg cgctctgggc
     4321 gccctctacc cggcggcgcg cgccgccaac ctcgaccccg tcagcgcgct ggcatacgaa
     4381 taatgcgtaa aattcttaag gccgagaatc tgacgaaagt ctatcgcacg gccggcggcg
     4441 ttgacgtgca cgccctgcgg ggcgtgtcgc tcgaagtaga ggagggcgag ttcctcgcaa
     4501 tcatggggcc ttcgggttgc ggcaagtcaa cgatgctgca ccttctgggg gggcttctca
     4561 cgcccacttc cgggcgcata gtgattgacg acgaagacct gacggccgcc acggacgcgc
     4621 gccgcaccga catacgccgc cgcaagatag gcttcgtctt ccagcgattc aacctcttcc
     4681 cgacgctcac ggccgagggg aatttgcgcc tcgccgagcg catacacggc gccggcgaca
     4741 agaagggcga ccccgagcgc cggcgcgaaa tcctccgcct cctcaagctc gaagacaaga
     4801 tgcaccacaa gccgctcgag ctctcgggcg gcgagcagca gagagtcgcc ctcgcccgcg
     4861 ccgtcgtcaa ccgccccgcc ataatcctcg ccgacgagcc cacggggaac ctcgacaccg
     4921 agaactccgc aatcgtcctg aacatgtttc aggagatgaa ctaccgcttc aaccagacca
     4981 tcataatgat cactcacaac ccggaggccg ccgccatgtg ccgccgcatc gtccagatgc
     5041 gcgacggcct aatcgttgcc cccgccccgc gtgtacagat ataatgcacg ggccggatgt
     5101 tgggcggcgg atgtcagttt tttccggcat ccgacaccca acatctgaca tctattttat
     5161 gctctggcgc gtacttaaaa acgtggcttt ttggccctac gggcgcacca cttggcagta
     5221 cgacgtgctg tgcgtcgcca tcctagcctt cgttttcctg acgcccaaaa gctggttcga
     5281 gcgggggaaa ctaagctgcc ccccggcgca tcaaaagggc ctcgaagcgg cacagaaact
     5341 gctgataaga acatcggttt cggccctcgc gcagccggac gcgcacgaca tagagcgctg
     5401 cgcccgcagc ataaccggca ggccgggttt gagggtcaag ggctggcggg aactcaagag
     5461 cacggacggc cgcacggtcg ctttcgaggt tgacacggaa taatcattca ctatactaac
     5521 ccggtttgac tccgggccga tggagtctcc ctaacgtctg aaggagtttg catgaagaag
     5581 tttttcacgc tgttcgccgc cgcactgatg ttggccgcct cgctgagcgt cgcgcccagc
     5641 ccggcgcagg cgcaaggccc cggcctcgtc agctccatac tcaacaagat ggagcgcaac
     5701 cgccgcgaga cgcggagcct tcgcgccggc atggtcatgc agaagtacaa cgcccagctc
     5761 agggactacg acatgtcctt cggcgaggtg aagtacgtcc ccggccaggg ccgcgacgtt
     5821 tgcgtgcgcg ttgactggtc gaagcccgcg cgcgagcacc tcgcctcctg ccagggccag
     5881 tacacgctct accgcccgcg cctgaaccag gccatacagg gcagcacgaa gtcgcgcagc
     5941 aagaacacgc gcgtcaacgg cgtgctctcg ttcgccctcg gcgcctcggg cgcgcagctc
     6001 aggagccagt acaacgtcga gcccgtcggc gaaggcacgc tcgacaacgg agtgcacttc
     6061 tggctgctca agttcacccc gcgcggccgc ggcgagttcc agtacgccga agtctgggtc
     6121 ggcgacgacg gcatgcccgt gcagacgcgc gtcaccgagc acaacggcga ctcgacgctc
     6181 gtccgcctca acaacgtgca gaagaacgtc ggcgtctcgc ccgacgagtt caagatcaac
     6241 ctcggcgccg gcgtgaagat cgtcaagggc tgagccgttt gacataaacg tgcggtagcg
     6301 cgaagggttc tggcgcgatt gacgggtcag ggcccttcgc ctttttgcgc accgcgactt
     6361 gcgcccgcac gcgcactttt cgtattgtat cgggactcca cggcggttcc ccgggcgcaa
     6421 aaattatcga gcggctttcc cccgcgcgcc ggcggtcgga cgaaaacggc cttgatcaag
     6481 agaagcacgc acctcaagct gaagctgcgc gaggcggcat tcatcgcccg cggcctgatg
     6541 tcgtcgcgcc accccgtgct ggcgcacgtc atcccgatgc gccgctgcaa cctcgcctgc
     6601 acctactgca acgagttcga caaggtctcg gaccccgtcc cgctcgaaga gatgcgccgc
     6661 cgcctcgaca agctcgcaga cctcggcacc tccatcataa ccatctccgg cggcgagccg
     6721 ctgatgcacc ccgacctcga ccagatcatc cgccgcatac gcgagcgcgg catgatcgcc
     6781 ggcctaatct cgaacggcta ctacatgacg cccgagcgca tccggcgcct gaacggggcg
     6841 gggctccagc acctgcagat aagcattgac aacctagagc cggacgaggt ctcgaagaag
     6901 agcctcaaga acctcgacaa gaagcttcag aacctcgccg agcacgccga ctttcacgtc
     6961 aacatcaact ccgtcatcgg cggcggcata aagaaccccg aggacgcgct cgtgatagcg
     7021 cgccgcgcgc aggagctggg cttcaccacg acggtcggcg tcatacacga cggccacgga
     7081 atactgaagc cgctcgccga gcgcgagcgc gccgtctatg acgagctgaa gaggacttcc
     7141 aagtcggact acgctcggct cggctggttc caagacaacc tcgccgccgg caagccgaat
     7201 gactggcgct gccgtgccgg cgcgcgctac ctctacatct gcgaggacgg gctggtgcac
     7261 tactgctcgc agcagcgcgg cacgcccggc atcccgctcg aacagtacac gcaggccgac
     7321 atagaccgcg agtacaagac cgagaagtgg tgcgcgccgc tctgcacggt ggcctgcgcg
     7381 cacaaggtcg ccatcctcga caactggcgc gacccgcaga agggctccgg gcaggagatc
     7441 gccccgcagc gactccgcga cgccatcatg cgcacgctgc gcgccggctg agggcagcct
     7501 ctacatcctc acctaacaaa aaatctcagt tcaatctaac ttcccttcgg gcgaggcgag
     7561 gcgttcggcc gcgcgggcgc acggcggggg cggggcttcc tgcgcgcact ctccgctgtt
     7621 gatgaaccgt ctgtaacttt cggccgcttc cgctccgcgc ccgagcgcgt cgagggcgcg
     7681 ggcgatgtgg aaggcgagcg cggcgtccgg ctcgccgcct gcctcggccg cgcgaaactc
     7741 tgcgagcgcc tcttcggcgc ggcccgcggc gagcagttcg agcccgagca gcttgcgcgc
     7801 gtgcgcgtcc tcgcgcacgg cgagcgccgc gcggtactcc tcgacggcgc gggctggccg
     7861 gttgtagagc ttcgccctct cggcccgcgc catgtgcgcg tcgaagctgc cgtagtcggc
     7921 gtaaaaatag gcggcgaaga tcgcgacgag agtcagcgcg taggcgggga cgaccccgcg
     7981 cgacctgccg cgagcccgcg acggcgggac ggcggccttc tcgtcaactt cgcccccggc
     8041 ggtttgcgcc ccgtcatctt gtgtgctcgt agatgtcgct gcgtcgcttg tgaagagtcg
     8101 cgcggcgagg taaagcggga ggaagacggg cgggaaggcg agcacgagga gcgcccatgc
     8161 ggcgaccgag ggcgggccga agccgacgcg gcggcgcgcg tcgtgcagaa ccagagtcga
     8221 gaggatcgcc gagagggcga agtaggccgg gcgcagaagc tcggccgagt cgccgaagga
     8281 gatttgccag tcggccgcca cgcgcgcaga gagaagccta gagctgccgc ggcagcgggc
     8341 cgccgacggt gtagagcgtg acggagctgg agaggcccat ccccgagagc ctgccggcca
     8401 tcaggacgag cgtctcgccc tgctgcgccg cggccgcctc gacgagc
//
LOCUS       DASPKR010000545        27108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1375762, whole genome shotgun sequence.
ACCESSION   DASPKR010000545 DASPKR010000000
VERSION     DASPKR010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 27108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27108)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27108
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1375762"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VD968_14600"
     CDS             <1..189
                     /locus_tag="VD968_14600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15671.1"
                     /translation="GEEVMRVLLDLNASGQTVFMVTHNPSNAALAHRVLNIRDGRLCG
                     EGIAPAETAEAAPELLTA"
     gene            205..2373
                     /locus_tag="VD968_14605"
     CDS             205..2373
                     /locus_tag="VD968_14605"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE15672.1"
                     /translation="MRLIILSFIILLAGPAASGQSVFSVTVKDQETREPVPGATVSVK
                     GTEISATTDARGVARLEGVPDGEQTVEIFSAGYETKELKLTFPAAAADGEVFIKVNND
                     LGEVTVVETTRTGREIDDVPTRVEAIDEEEIGEKMSMRPANVSMVLNESTGIKVQQTS
                     ATTQTQSVRIQGLDGRYTQILKDGFPAFGGFSGSLGVLDIPPLDLKQVEIVKGPAATF
                     YGGGAIAGVINFISRQPEEEPVTNMIFNATSAGGLDFSVFDARRLGRHGYTLLGSVNL
                     QREYDADSDDFTELPRARSFNVAPRLFFSLGGRARLTIGNSTSYQSREGGDVQVIRGR
                     ADEQHRYSERNDSLRNITTLQLDRELSAGRRLVARQSLALFTREIEIPGYRFDGRQFN
                     SYTDISYFHPVGGHALVFGFNAAHDGFSERGAVAGTGARDESRTTFGGYAQDSFAVTE
                     KLSLEAGFRLDHVRGYGAFALPRVSALYRFTGRLSSRFTVGFGYKAPSIFTEEAETLL
                     FRGVLPVGNSLKAERSRGGTFDVNYRGTAGEKFSYSLNQMFFYTEIEDPLVLTAGPGG
                     TFRFINAARPVASAGFESNARLSYDFVKLFAGFTFTSAKAKYLAGDRTLALTPKGRLN
                     SALLFEREENFKAGVEAYYTSGQLLTDRSRARAFWVVGLFGEKTFGKYSLFFNAENVT
                     DTRQGRFGTVVFPPRQNPTFAEIYTHTEGRVFNGGVKVRL"
     gene            2508..4016
                     /locus_tag="VD968_14610"
     CDS             2508..4016
                     /locus_tag="VD968_14610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15673.1"
                     /translation="MRILIFGTWRLRVLLLASAILYAAAPEAAGQHHHDPPVARPTPT
                     ATPKPTPAPKPTPAEAVVAPGRPAQATTGGAAHDHSAHGQGAEVTKSAEGDSPHGGHS
                     AGDVPMTSRDGSGTSWQPASTPAYMLHKRAGGWLLMLHGEAKVGVNSQGGPRGVTKFE
                     SQNWLMPMATREAGRGTLELRGMFSLEPLTYSGAGSPQLFQSGEVYQGRPIVDAQHPH
                     DLLMELSARYTLPVGDRGSWFAYFGYPGEPALGPVAFMHRASAAENPSAPLAHHLQDS
                     THISFGVFTTGFTYRWLKVEGSVFNGREPDEERYGFEAGPWNSRSVRVSVAPNKNWAL
                     QYSYGFLKNPELLHEGDTHRQTASIQYNRPLARGNWATSLVWGRNREGDEGHTFRLNS
                     YTLESTLNFAGKNYIYTRLELVDKKDILRPEDLPKLGLGEHAHPQFRIGAYSFGYVRD
                     LYAGDKYSLGLGGDTTFYSKPEALDVLYGKSPVSWKGFLRIRLGGRGAGHGM"
     gene            4130..4636
                     /locus_tag="VD968_14615"
     CDS             4130..4636
                     /locus_tag="VD968_14615"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-responsive transcriptional
                     regulator"
                     /protein_id="HYE15674.1"
                     /translation="MRDTSRGARTVGEEEGRRMLKIGDVSKRSGIGVEALRFYEKSGL
                     LDKPSRTYSGYRVYGEEVLERLAFIKRAQALGFSLEEIRQIVDDARRGESPCEEVREI
                     VRRRMEELDERLRELHRYRKELKHTLEEWDKVGRAPGHICGLIEGSEVRHAAHHKGEG
                     LKRGKRGA"
     gene            4688..6982
                     /locus_tag="VD968_14620"
     CDS             4688..6982
                     /locus_tag="VD968_14620"
                     /inference="COORDINATES: protein motif:HMM:TIGR01511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HYE15675.1"
                     /translation="MQATSATKEESVDPVCGMTVVPAKAAGTSERDGVRHYFCSRGCK
                     ERFDSAGAGAAHEGHGHRGHVMNEPEQARQAPRGGDAREAQAESYRTMMRKFWFAAAV
                     GAPLLLLMFAEFVPAWQHALMPYHRLIGMASAALTLPVLAWSGRQFFESAWNGLLNHN
                     TNMDTLVALGTGAAWAYSAAAVAAPGLFPEGTGGMYFEVAVIVIALILLGQALEMRAK
                     SRSSAALRKLLELQAKTARVVRGGREVDVPIEEVVVGDTVLVRPGEKVPVDGVIIDGE
                     SAVDESIVTGESVPVDKKRGDGVIGSSVNKTGAFTFRATKVGADTALARIVEMVERAQ
                     SSKPPIGRLVDKVSSYFVPTVMILAVLTFLAWFNFGPEPAVNHAVVTMVAVLVIACPC
                     ALGLATPISLMVGVGKAAEHGVLIRNGEALETASRLTTVVLDKTGTITKGKPELTDVL
                     PLEGFAEGELLRLAATADRRSEHPLAEAIVSGARSRGVTLGEPEEFEAVPGHGVEATV
                     EGMSVAVGNRKLMERAGVDASAFEPAAAGLADEGKTPMFVAVGGQPAGVVGVADTLKE
                     DSVEAVRALRSMGIDVVMITGDNERTARAIARQAGIEQVLAEVLPEEKARQVERLQAE
                     GPPRGGRRARGARLVGMVGDGINDAPALAQADVGFAVGTGTDVAIEAADVTLVGGSLR
                     GVVTAIEVSRATLRNIKQNLFGAFIYNVLGIPVAAGVFYPLFGVLLSPIIAGAAMAAS
                     SITVVTNANRLRLFGPRRAGEVRG"
     gene            6979..7356
                     /locus_tag="VD968_14625"
     CDS             6979..7356
                     /locus_tag="VD968_14625"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HYE15676.1"
                     /translation="MTATQIVVTLLGFGLIGWVVWYFWLWEGESVEARAGAGGLQVVD
                     VTVKGGYQPAAIVAKAGRPLRLNFTRRESTPCGEEVVLPGFGRRAHLPEGETVAVEMT
                     PAEPGEYEFTCGMNMYKGKIIVR"
     gene            7446..7535
                     /locus_tag="VD968_14630"
     tRNA            7446..7535
                     /locus_tag="VD968_14630"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7480..7482,aa:Ser,seq:gga)
     gene            7560..8072
                     /locus_tag="VD968_14635"
     CDS             7560..8072
                     /locus_tag="VD968_14635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15677.1"
                     /translation="MRRLLLTISALGLLCAVAAAAGDASAQRRGRARPRPVCGDPTVR
                     CRTTAVFQPHQLPFEVSASDVIVESEPFYMVILKSVRDTAQDGTVFVPEDERLEAQKL
                     FPRHKVFASRGYEPDELYYEGTAEGQQFMAVFAGRTRAEAGRVLARVRATGKFPGANL
                     RRTRTGFNGT"
     gene            8151..8249
                     /gene="ffs"
                     /locus_tag="VD968_14640"
     ncRNA           8151..8249
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VD968_14640"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            8353..8727
                     /locus_tag="VD968_14645"
     CDS             8353..8727
                     /locus_tag="VD968_14645"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYE15678.1"
                     /translation="MKINILRLDHVQVCVPPGAEERARDFYGGVLGLEEIEKPEALKK
                     SGGLWYNVADVQLHIGVEPEVAPSKRHPAFEVEDAAGVRAYLEGRGVRTKDEVTIPGV
                     AGRFSFFDPFGNRIELIEKAKS"
     gene            8745..10832
                     /gene="dnaX"
                     /locus_tag="VD968_14650"
     CDS             8745..10832
                     /gene="dnaX"
                     /locus_tag="VD968_14650"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004046.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HYE15679.1"
                     /translation="MSYQVIARKWRPQTFEEVTGQEHITRTLRNAVEHERLHHAYLFS
                     GARGVGKTTTARLLAKAVNCHKSDRPTPTPCRSSDPAACPSCREIAEGRSIDVLEIDA
                     ASNTGVDNVRDAIINTIGVRAARDRYKVFIIDEVHMLSTPAFNALLKTLEEPPPRVLF
                     IMATTHAHKVPETILSRSQQFEFRTIAASKIAERLRLIADAEKIDVSDDALREVARAG
                     EGSMRDAQSAFDQVISFSEGRIEAADVEAALGLAGTELLSRVMRAVADAKPAEALAVV
                     DDLVARGHDLRNFCRDLLAHLRGLLVVKVAGDSSPLADITEAERRELSAEARDFSESD
                     IVRFFHSLTETEARLRESAHPRYQLEIGLVKLIEMRRLAPLSQIVERLGALEAALRNG
                     GGTGSPGAQTPPASAPAAGTPSRAGGRGGGAASFSAAEPGPQPQAPSASAPARTSAET
                     FNAPPSIAAAPPSATAPAPSNFGAGRAATASTPNLKLVPPSSGGARTSDVPFPVAGPE
                     GPPEPLSFFEEVRAGEDRVGQPVSLRPASAPSPAGATASGPARGGAREAQADDAASRI
                     KRGLEERSKPLLAAAVDGARRVLTEGEEVYVEFAPDTKHLRDTLSRPENMRLLREACC
                     QALGRQVGVRVEVRVPGESDDVPLTRQDEERLEQQRLREFAENHPLVQKVLKTFRAEI
                     IEVKRIDGGQQQQ"
     gene            10888..11094
                     /locus_tag="VD968_14655"
     CDS             10888..11094
                     /locus_tag="VD968_14655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15680.1"
                     /translation="MRDPVLAGLLSFIIPGVGQLYNGQILWGILWLIFTPGFWIGTGG
                     LLGWLCHIIAAYLAYSYAKDHPVR"
     gene            complement(11183..13183)
                     /locus_tag="VD968_14660"
     CDS             complement(11183..13183)
                     /locus_tag="VD968_14660"
                     /inference="COORDINATES: protein motif:HMM:NF026220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HYE15681.1"
                     /translation="MAAYVPATTTKRAALLCLAALALACAAPPAALARQAQQPWLWQN
                     PLPQGNAIYAVRFAADKRTGWAVGAAGVILRTEDGGFRWKEQRSGTPVPLYGLFVKDA
                     RTAVAVGSRGQVLMTANAGKTWLIRQTGVRDHLYSVAFAPDALHGWAVGSYGQIVKTS
                     DGGKTWAAQKSGVRAHLYSVSFSGVKNGVAAGEDGTLVVTRDGGQTWVARPVETELPF
                     TSVAFAGPTGRAVAVGMGGLMARTEDGGETWAVADALTRADLLSVFFSDSEHGWATGD
                     EGQVLTTGNGGLTWFPVSVKTRPRLAAIHFADESTGWAAGRDGLILRTDDGGIQWRRL
                     TDGGRDDLADIFFLDDDRGWAVGSRGRILYTSSGGKRWTLRPSGTTARLHAVFFADEL
                     RGWAVGERGTILRSPTGGISWEQAASEIEDDLFGVHFVDASRGVAVGARGRILKTDDG
                     GKTWRLRSSFTQNWIEAVAFADPATAVAVGSNGTVLRSTDGGESWDTVNVNAKEWLYG
                     LAFADAQRGYMVGERGLILRTDDGGKTWKDQESGLKINLYSVAVAGRDDVMVVGEQGR
                     VLQTSDGGEEWMLQPTVTSASLFGASYLGGTAAWVAGRGGTILKRTDSVATVKIPRPK
                     VPPVLRRGPPRMKTESPEAELLAPVLDDDIPRAAPPKEAQKP"
     gene            complement(13328..13795)
                     /locus_tag="VD968_14665"
     CDS             complement(13328..13795)
                     /locus_tag="VD968_14665"
                     /inference="COORDINATES: protein motif:HMM:NF012304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase H family protein"
                     /protein_id="HYE15682.1"
                     /translation="MKEVLIYCDGSSLGNGQGAARAAAVALLGYMGTWRAFGLYLGEA
                     TNQQAEIAAAALGLEQLREPCRVRLMTDSRYVVETMSGRFRRKSNHEWWERLDKAAGP
                     HSVSWEWVKGHAGHVAQEAVDRAARKVAGLGRADREVLSEAAEAVAGSATGGR"
     gene            complement(13818..16880)
                     /locus_tag="VD968_14670"
     CDS             complement(13818..16880)
                     /locus_tag="VD968_14670"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC family ATPase"
                     /protein_id="HYE15683.1"
                     /translation="MHVTRVELENIKSYERGAFAFERGTTAIVGPNGAGKTTILEAVA
                     WALFDVLDYSKDDFLRRGAKRGTVRVTFQNDLDERLYVVYRDTGTGYYVYDPELKMKL
                     ASGKADVRKWLDLHLGIEPGTDLKALFRSAIGVPQGLFTSDFLQTPTDRKKSFDRLLK
                     VEEYRESAERLRDTVSLINERITEARVRIGGAEAQLARYDDAAAEHESAARRVEELTA
                     ALGSLRAEAESRLLVVAALEEAERRAAEAHARAVRLEVERESAERRLGDLSAELEAAR
                     AAGERQRTTRDGYEKFIEATERLRSLEAERAERELLRAEAAEVARTLAAAEADARRLG
                     DALARAESAREALAGLEGDLAAQEESERERERLRDLLAEARAARERLTRLDRELESLR
                     RQHTETRERVRAAEALAGAQGEAERLESERMGVETRLSKVEKALTSRKHLTRERREAE
                     REIERLRRGLASLEREAREYEQAAARAGHLAELESRERELSDRAARLREAIARDERAS
                     ERARGGVCPILHETCKNLAEEGRTFEDHFGEQIKAGRASLSQVEREQTAAARELRQAR
                     DAEKTAARFETTRARLAHDRELLREREAALAAIDEEMAALSADADEKLQDELQSQIIG
                     IDDLLRRAREGALRYAELEPLRARLEEITEEGRARRDEREQVAAIAGGEESLAADAEA
                     VERRLRELGDPRGRAAALRTEAGRAEELRLESEEALKAVAALREQSAALDARLARFAR
                     LDAEWAGAASLRDSSADAYREHLECASLASTLPARQAAARDAEEEAARAARAAARARE
                     EHERAAAAYDRDRHASEAAALALAREEAAKTSAQLEAAREREGALRAELARLEEVRET
                     MREELRERERLEELSQTTEFIRDTLRKAGPLVTESYLYNISIEANHLFREITGEGGRA
                     LRWTRDYEIMLEEGGHERPFVNLSGGEQMVAALSVRLALLKQLSDIRVAFFDEPTVNM
                     DAERRERLAQQIGQVRDFDQLFVISHDDTFEQSVDHVVAVTREAQEVA"
     gene            complement(16987..18630)
                     /locus_tag="VD968_14675"
     CDS             complement(16987..18630)
                     /locus_tag="VD968_14675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15684.1"
                     /translation="MRVPLLALALLLCTASASAQHHAPARSPEAPAALMPDLGSFHLP
                     VRTSSAEAQKFFDQGLILVYGFNHAEAARAFRRAAELDPRMAMAHWGLALALGPNYNQ
                     TSIPPERLKAAHEAVQKGLALAAGGPEHERAYLEALSKRFSADAGADQRKLWVAYRDA
                     MGELARRYPDDTEAATLYADAAMILNAWRLFKPDGSAAEGTEEVIATLESVLRRDPEH
                     IGAHHLYIHAVEASHAPERALLSADRLTALSPASGHLVHMPAHIYMRTGDYERAAKSN
                     EWAAKVDEEYLSRGGLRGIYSAAYYSHNLHFLAAAESMRGRYAAAVAAARRLEQNVEP
                     YLKEMPFFESFMPTRSLIAARFGRWDEILKTTEPPATMQATNALWHWARGMAHVATGK
                     TAEAEADLRNLVAKAQAVPPEDSYGQNRTRDVLKIAEHFLNARIASARGDRKAAINFL
                     RQAVAAEDALAYDEPPGWYHPLSRESLGGALMLDKQFAEAEAVFREDLRRNRRNGRSL
                     FGLSESLKAQGKAREADLVRREFERAWKGADTQLKIEDL"
     gene            complement(18697..19344)
                     /locus_tag="VD968_14680"
     CDS             complement(18697..19344)
                     /locus_tag="VD968_14680"
                     /inference="COORDINATES: protein motif:HMM:NF025391.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4241 domain-containing protein"
                     /protein_id="HYE15685.1"
                     /translation="MSPPDFSKLFEDGRVVESADFGRVTLKVHAAGELVLTTGRVAAF
                     DPATSPETEAFAEALPPGRYPVVLSVAHFEDGDQRVAGAMLKVGEGAATKWEMALLPG
                     QDVSELGEGEVFGYAVDSATGCFADEEAAARYLDAIEADEEFFDRVGDLLDETYVDTW
                     SWASVEFDPATGLNMIVFSTGMGDGLYASYLGRDDSGAVMSLVTDFALFEHEELA"
     gene            complement(19351..21150)
                     /gene="lepA"
                     /locus_tag="VD968_14685"
     CDS             complement(19351..21150)
                     /gene="lepA"
                     /locus_tag="VD968_14685"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HYE15686.1"
                     /translation="MKPELIRNFSIIAHIDHGKSTLADRLLELTGALSEREMEAQVLD
                     DMDLERERGITIKAHAVRLDYQARDGRQYVLNLIDTPGHVDFSYEVSRSLSACEGALL
                     IVDASQGVEAQTLANTYLAIGENLELIPVINKIDLPGAEPDKVKEQIEHVIGLDTHNA
                     VLASAKTGEGVPEILEAVVRDIPAPNGSADAPLKALIFDSWYDSYRGVIVLFRIIDGS
                     IKPGMKIRFFNTGRDYQVESVGVNRPRPTPLDSLSVGEVGFLTASIKTVADVQIGDTI
                     TEAARPTKEPFPGFQEIKPMVFAGLYPVEANQYEELRDALDKLRLNDASFFYEPESSA
                     ALGFGFRCGFLGLLHMEIVQERLEREFDLDLITTAPGVRYRVTTTDGETIEVDSPAKM
                     PDAVRISKIEEPIIEATILTTDEFLGGILPLLEEKRGVQKKFEYIAEKRVMLVYDLPL
                     NEIVLDFYDRLKSVSRGYASLDYHLAGYRESDLVKLDLMVAGEPVDALSIIVHRQASQ
                     ARGRQLAEKMRQLIPRQLFEVPIQAAIGNKVIARETVKALGKNVLAKCYGGDITRKRK
                     LLEKQKEGKRRMKRVGRVEIPQEAFLAVLKVNE"
     gene            complement(21267..22445)
                     /locus_tag="VD968_14690"
     CDS             complement(21267..22445)
                     /locus_tag="VD968_14690"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HYE15687.1"
                     /translation="MFELDERAAVRSGGGDWRHGAARLGFIWGLWTLVGLFFSSQIYF
                     YFIRTQKPVPLTRAIAWQVLASWVFAAGTPLVLWLARRFRVERNNWRRRLLVHFAAGT
                     TIAAAWAACHVTLDLWFSGNLSTLTPSNLARLVFANFDKQLLVYCIVVLVSHALDYHQ
                     RYREGELRASQAQLQALKMQLHPHFLFNALHSISALVHKDPGAADRMIARLGDFLRLT
                     LDTAAAQEVPLRQELEFLECYLGIERIRFCDRLTTSIDVDPLALNCRVPNLILQPIVE
                     NAIRHGIATRSAPGRVEIKAERRGAVLSLQVRDDGPGLTAGARAGKASQTGVGLANTR
                     ARLEQLYGADYNFEMADDPRGGTLVTIEIPLRAAGQPAQTTPRAAARPEGSYQPALGK
                     "
     gene            complement(22597..22821)
                     /locus_tag="VD968_14695"
     CDS             complement(22597..22821)
                     /locus_tag="VD968_14695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15688.1"
                     /translation="MPFITATREDGATLLVNIDRIQYVAYQDAEGHEVLSIIFDTNPP
                     AQGRPGTNEVVVHGEEARRVWEALSSVLGM"
     gene            complement(22841..23794)
                     /locus_tag="VD968_14700"
     CDS             complement(22841..23794)
                     /locus_tag="VD968_14700"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HYE15689.1"
                     /translation="MTAAPPNEEHYVGVELSGTALRAALVSASGRVLERFEAALSESE
                     VSQQVARAAAQLRDASPSGVAAVGVGLPGLVNPRTGRVIISSDLPSVVRGDFREELRQ
                     ATGLPVVLDNDANAGAVGEHAVGAGRGSRDMFYVTIGTGIGGAIILDGRLWRGASGFA
                     GEFGHITIDPEGVECACGNVGCLETVASAPNIVRRTHERLLRDSTSSLSRLGLTKNFT
                     AADIAHEARGGDDFALLMIERTGRYIGTAVAAVINLLNIERVVLGGGVMDAGELILNP
                     IIREAGRRSFQPCFESTQILAASLGADAVPIGAALLARDAR"
     gene            23958..24419
                     /locus_tag="VD968_14705"
     CDS             23958..24419
                     /locus_tag="VD968_14705"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HYE15690.1"
                     /translation="MRISTILLPTDFSECARHAVPAAAHLARLQGARVICLHVVEPVV
                     PSVGWTPIAEPLPVADISEQLETSAASELPKFAGCEEFEGLDVEDLIVHGEASAEIVN
                     VARARGADLIVISSHGRTGLGRIIFGSTAESVVRHAPCPVLVVKPPHGSDE"
     gene            24493..25218
                     /locus_tag="VD968_14710"
     CDS             24493..25218
                     /locus_tag="VD968_14710"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HYE15691.1"
                     /translation="MDLQYVNNILASFGLPAIFVLTMLEGDITLLLAGVLAHGQAFGD
                     YSFAQVLATGTLGGVVSDNVAYFLGRGARSGVKKYRFYCMARPRIERLTDKFGPLSIF
                     VSKYTYGLRWGACAFYGVAKMPYGRFLLLSFASCFVWVLSLAGVGYVFHSAIYNLIGD
                     FKHVGVVLLVIIALGIAGFYFAERYWLSKKVEEADPERIHKLEQAAGDKLNEIKEEIQ
                     EIFPHPLSRHKEPPKRKGKAEGD"
     gene            25305..26312
                     /locus_tag="VD968_14715"
     CDS             25305..26312
                     /locus_tag="VD968_14715"
                     /inference="COORDINATES: protein motif:HMM:NF020133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15692.1"
                     /translation="MIIESTAPTRVDLAGGTIDIWPLYLFHPGASTVNFGITLNARVR
                     IETRDDDQVILESRDRAVSFETSLSEIESLAREERLELISKLVHFFKPETGFNLIAES
                     AAPAGAGLGGSSSLAIACIGALNRLCGDRYPERKFIIIAANVETTVIRVPAGFQDYYG
                     AFYGGANCVEFSAEGIRREPVNLDAAELERRLVIIYTGEPRLSGTNNWEIFKKHIDGD
                     RELFGLFEGIRDSARLMRVALAANDWRRVGEIMREAYPNRKRLAPNVTTPHMDALVGR
                     ALANGAVAAKVCGAGGGGCIAFLCEEGAKESVESALAAEGGAEVLRWSFSRDGLVVRE
                     L"
     gene            complement(26398..>27108)
                     /locus_tag="VD968_14720"
     CDS             complement(26398..>27108)
                     /locus_tag="VD968_14720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15693.1"
                     /translation="TVCNEKNEKGKLCIGHLKQKDTRHPSAAYLRGDDVLYQCQTCGA
                     LYMGPPMGHVRDPRKQRRYVERDLAAILQAAGGTLPAYDYPTPAWRGEPKPKPVKAVK
                     PAPAAKAPAAASPADSSPSADKHRPAAEAQAATGRASAAPMSPAAATASPAAGAETVS
                     DLAPEASTELTPGAPKDERPATAEAKPAEAKPKKASGAGFKIPPELLKAPPGETPEQK
                     IARLKRIAEEAKRASGKL"
BASE COUNT         4194 a         9159 c         9399 g         4356 t
ORIGIN      
        1 ggcgaagagg tgatgcgcgt cttgctcgac ctcaacgcct cggggcagac cgtcttcatg
       61 gtcacgcaca acccctcgaa cgccgcgctc gcgcacaggg ttctgaacat acgggacggg
      121 aggctctgcg gcgagggaat cgcgccggcc gagacggcgg aggcggcgcc cgagttgctc
      181 accgcctgac gaacaggggg aatcgtgagg cttataattt tatctttcat catcctgctc
      241 gcggggccgg ccgcgtcggg gcagagcgtc ttcagtgtga ccgtcaaaga ccaggagacg
      301 cgcgagcccg tgcccggcgc gaccgtctcg gtgaagggga cggagatttc ggcgacgacc
      361 gacgcgcggg gcgtcgcgcg gctcgaaggc gtccccgacg gcgagcagac cgtcgagatt
      421 ttctcggccg gctacgagac caaagagctt aagctcacct tcccggcggc ggcggccgac
      481 ggcgaggtct tcatcaaggt caacaacgac ctcggcgagg tgacggtcgt cgagactaca
      541 cgcacggggc gcgagataga cgacgtgccc acgcgcgtcg aggccataga cgaggaagag
      601 atcggcgaga agatgagcat gcgcccggcc aacgtctcga tggtcttgaa cgagagcacc
      661 gggataaaag tgcagcagac cagcgcgacc acgcagacgc agagcgtgcg catacagggc
      721 ctcgacggcc gctacacgca gattctcaag gacggcttcc ccgccttcgg cggcttctcc
      781 ggcagcctcg gcgtgctaga catcccgccg ctcgacttga agcaggtcga gatagtcaaa
      841 ggcccggcgg cgaccttcta cggcggaggg gcgattgcgg gcgtcatcaa cttcatcagc
      901 cggcagccgg aggaggagcc cgtcacgaac atgatcttca acgcgacctc ggccgggggc
      961 ctcgacttct ccgtcttcga cgcccgccgc ctcggccgcc acggctacac gctgctcggc
     1021 tccgtcaacc tacagcgcga gtacgacgct gactccgacg acttcacgga actgccccgc
     1081 gcccgctcgt tcaacgtcgc gccgcgcctc ttcttctcgc tcggtgggag ggcgcgcctg
     1141 acaatcggga actcgacctc ctaccagagc cgcgagggcg gcgacgtgca agtcatacgc
     1201 ggccgcgcgg acgagcaaca ccgctactcg gagcgcaacg actcgctgcg caacatcacg
     1261 accttgcagc tcgaccgcga gctgtccgcc ggccgcaggc tcgtcgcgcg ccagagcctc
     1321 gccctcttca cgcgcgagat agaaatcccc ggctaccgat tcgacggccg acagttcaac
     1381 tcctacaccg acatctccta cttccacccc gtcgggggcc acgccctcgt cttcggcttc
     1441 aacgccgcgc acgacggctt ctccgagcgc ggcgccgtcg ccggcacggg cgcgcgcgac
     1501 gagagccgca cgaccttcgg cggctacgcg caggacagct tcgccgtcac cgagaagtta
     1561 tcgctcgaag ccggcttccg cctcgaccac gtccgcggct acggcgcctt cgcgctgccg
     1621 cgcgtctccg cgctctaccg cttcaccggc cgcttgagca gccgcttcac cgtcggtttc
     1681 ggctacaagg cgccgagcat cttcacagaa gaggcggaga ctttgctctt ccgcggcgtc
     1741 ctgcccgtcg ggaactctct gaaagctgag cgcagccgcg gcggcacctt cgacgtgaac
     1801 taccgaggca cggccggcga gaagttctcc tactcactta accagatgtt cttctacacc
     1861 gaaattgaag acccgctcgt cctgacggcc gggccgggcg gcacgttccg tttcatcaac
     1921 gccgcgcgcc ccgtcgcgag cgccggcttc gagtcgaacg cgcgcctctc atacgacttc
     1981 gtaaagctct tcgccggctt caccttcacc agcgcgaagg cgaagtacct agcgggcgac
     2041 cggacactcg cgctcacgcc gaagggcagg ctcaactccg ccctgctctt cgagcgcgag
     2101 gagaatttca aggcgggcgt cgaggcttac tacacgagcg gccagctcct cacagaccgc
     2161 tcccgcgcgc gcgccttctg ggtcgtgggc ctcttcggcg aaaagacttt cggcaagtac
     2221 agcctcttct tcaacgccga gaacgtcacg gatacgcggc agggccgctt cggcacggtc
     2281 gtcttcccgc cgcgacagaa cccgaccttc gcggagattt acacccacac cgaggggcgc
     2341 gtcttcaacg gcggtgtcaa ggtgaggctc tgacaagggg cagtcaggga ggcccgtgcc
     2401 acatccacga actattttca acttccgctt gacactgtac tcgtctccag ggtctagact
     2461 ctcattcgtg ggccggcaat gcccgaaaat ttctacggag ggcggtcatg agaatcttaa
     2521 ttttcggcac ttggcgcttg cgcgtgctcc tgctggcatc ggcaattcta tacgccgccg
     2581 cgccggaggc ggcggggcag catcaccacg acccacccgt cgcgcggccg accccaaccg
     2641 cgacaccgaa accaactccc gcgccgaagc ccacgcccgc ggaggccgtc gtagcacccg
     2701 gccgccccgc gcaggcgacc acgggcggcg cggcgcatga tcatagtgcc cacggccagg
     2761 gtgcggaggt cacgaaatcc gccgagggcg acagcccgca cggtgggcac agcgccggtg
     2821 acgtgccgat gacgagccgc gacggctccg gcacttcatg gcagcccgcc tctacgcccg
     2881 cctacatgct ccacaagcgc gcggggggat ggctgctgat gctgcacggc gaggcgaaag
     2941 tgggcgtcaa ctcgcagggc gggccgcgcg gcgtcacgaa gttcgagtct cagaactggc
     3001 tcatgccgat ggcgacgagg gaggccgggc gcggcacgct cgaactgcgc ggcatgttca
     3061 gcctggaacc tcttacctac tcgggcgccg gctcgccgca actcttccag tcgggcgagg
     3121 tctatcaggg gcggcccata gtggacgcac agcacccgca cgacctgctg atggagctgt
     3181 cggcgcgcta cacgctgccg gtcggtgacc gcggctcctg gttcgcctac ttcggctacc
     3241 cgggcgagcc cgccctgggt cccgtcgcct tcatgcaccg cgcgtcggcc gcggagaacc
     3301 cgtcggcgcc gctcgcacac caccttcagg actcgacgca catctcgttc ggcgtcttca
     3361 cgaccggctt cacctaccgc tggctgaagg tggagggctc ggtcttcaac gggcgcgagc
     3421 cggacgaaga gaggtacggc ttcgaggccg ggccttggaa ctcgcgctcg gttcgcgtct
     3481 ccgtggcgcc gaacaagaac tgggccctcc agtactccta tgggttcctg aagaacccgg
     3541 agctgctgca cgagggcgac actcaccgcc agacggcgtc aattcagtac aacaggccgc
     3601 tcgcgcgcgg gaactgggcg acgagcctgg tctgggggcg caaccgcgag ggcgacgagg
     3661 gccacacctt caggctcaac agctacacgc tggaatccac gctcaacttc gcgggcaaga
     3721 actacatcta cacgcgcctg gagctggtgg ataagaagga catcctccgg cccgaggacc
     3781 tgcctaagct ggggctcggg gagcacgcgc acccccagtt ccgcataggt gcctacagct
     3841 tcggctacgt gcgcgacctc tacgcgggcg acaagtactc cctgggcctg ggcggcgaca
     3901 cgaccttcta ctcgaagccg gaagccctcg acgtgctcta cggcaagagc ccggtctcgt
     3961 ggaaggggtt cctccgaata cggctcgggg gcaggggcgc gggccacggg atgtgagggg
     4021 cgaaaattcg ccccgcaaat ttttaagggc tcgaaaaata cctgttgact ctgtagtgca
     4081 gtacagactt tatactggga acagcttgtg acgggaggtt ggctaagtga tgcgtgatac
     4141 gagccgaggc gcgaggacgg taggcgagga ggaggggcgg cggatgctca agatcggcga
     4201 cgtctccaaa cggagcggca tcggcgtcga ggcgctcagg ttctacgaga agagcgggct
     4261 gctggataag ccgtcgcgca cctacagcgg ctaccgcgtt tacggcgagg aggtgctgga
     4321 gcggctggcc ttcatcaagc gggcgcaggc gctcggcttc tccctcgagg agataaggca
     4381 gattgtggac gacgcccgga ggggtgagag cccctgcgag gaggtgcgcg agatagtccg
     4441 gcgccgcatg gaggagctcg acgagcggct gcgcgagctg caccgctaca ggaaggaact
     4501 caagcacacg ctagaagagt gggacaaggt ggggcgcgcg cccggccaca tctgcgggct
     4561 catcgagggc tcggaggtca ggcacgccgc acaccacaag ggggaagggc tgaagcgagg
     4621 gaagcgcggg gcctgaaagc cccgcggcgg gcggggctcc ccggcgacgg gggaagggag
     4681 tccgaagatg caagcaacat ctgcgacgaa agaagagtca gttgacccgg tgtgcgggat
     4741 gacggtcgtc ccggcgaagg ccgccgggac gagcgagcgc gacggcgtgc gtcactactt
     4801 ctgctcgcga gggtgtaagg agaggttcga ctcggcgggc gccggcgccg cgcacgaggg
     4861 tcacggtcac cgcggccacg tcatgaacga gccggagcag gcccgccaag ctccgcgcgg
     4921 cggcgatgcc cgggaggcgc aggccgagag ctatcgcacg atgatgcgga agttctggtt
     4981 cgcggccgcc gtcggcgccc cgctgctact gctgatgttc gcggagttcg tccccgcgtg
     5041 gcagcacgcg ctgatgccgt accaccgcct gataggtatg gcctccgccg cgctgactct
     5101 gccggtgctc gcgtggtcgg gccggcagtt cttcgagagc gcgtggaacg gcctgctcaa
     5161 ccacaacacg aacatggaca cgctggtcgc gctcggcacg ggcgcggcct gggcatactc
     5221 ggccgcggcc gtcgcggcgc cgggcctctt tcccgaaggc accgggggga tgtacttcga
     5281 ggtggcggtc atcgtcatcg cgctcatact gctcgggcag gcgctcgaga tgagggcgaa
     5341 gagccgttcg agcgcggcgc tcaggaagct gctcgagcta caggcgaaga ccgcgcgcgt
     5401 cgtccgcggc ggccgcgagg ttgacgtgcc catagaggag gtggtggtcg gcgacacggt
     5461 gctcgtccgc cccggcgaga aggtgccggt ggacggcgtc atcattgacg gcgaatcggc
     5521 ggttgacgag tcaatagtga ccggcgagtc cgtccccgtg gataagaagc ggggcgacgg
     5581 ggtcatcggc tcgagcgtca acaagacggg cgcgttcacc ttccgcgcga cgaaggtcgg
     5641 ggccgatacg gcgctcgcgc gcattgtcga gatggtcgag cgcgcgcaga gctccaagcc
     5701 tccgattgga agactggtgg acaaggtcag ctcctacttc gtgccgacgg tgatgatact
     5761 cgccgtgctg acgttcctgg cctggttcaa cttcggcccc gagcccgccg tcaaccacgc
     5821 cgtcgtgacg atggtcgcgg tgctcgtcat cgcctgcccg tgcgcgctcg gcctggcgac
     5881 gcccatcagc ttgatggtgg gcgtggggaa ggcggccgag cacggcgtgc tcatacgcaa
     5941 cggcgaggcg ctcgagaccg cctccaggct cacgaccgtg gtgctcgaca agacgggcac
     6001 tattacgaag ggcaagccgg agctgaccga cgtgctgccg ctcgaaggct tcgcggaggg
     6061 cgagctgctc cgcctcgccg cgaccgcgga tcggcggagc gagcacccgc tcgcggaggc
     6121 aatcgtgagc ggcgcgcgct cgcgcggcgt cacgctcggc gagccggagg agttcgaggc
     6181 ggtgccgggc cacggcgtcg aggcgacggt cgaaggcatg agcgtggccg tcggcaaccg
     6241 gaagctgatg gagagggcgg gcgttgacgc ctcggccttc gagccggcgg cggccgggct
     6301 agcagacgag ggcaagacgc cgatgttcgt cgccgtcggg ggccagccgg ccggcgtcgt
     6361 gggcgtcgcc gacacgctaa aggaagactc cgtggaggcc gtgcgcgccc tgcgctcgat
     6421 gggcattgac gtggtgatga taaccggcga caacgagcgc acggcgcgcg ccatcgcgcg
     6481 ccaggccggc atcgagcagg tgctggccga ggtgctgccc gaggagaaag cgcggcaggt
     6541 cgagaggttg caggccgaag gcccgccgcg cggggggcgc agggcccgcg gcgcgcgcct
     6601 cgtcgggatg gtgggagacg gcatcaacga cgcgccggcg ctcgcgcagg ccgacgtggg
     6661 cttcgccgta gggacgggga cggacgtcgc catagaggcg gctgacgtga cgctcgtcgg
     6721 cgggagtttg aggggcgtcg tcacggcgat agaggtctcg cgggcgacgc tgcgcaacat
     6781 aaagcagaac ctgttcggcg ccttcatcta caacgtgctc ggcatccccg tggcggcggg
     6841 cgtcttctac ccgctcttcg gggtgctgct ctcgcccatc atcgcggggg cggcgatggc
     6901 cgcgtcttcc ataacggtcg tgacgaacgc gaaccgcctt cggctcttcg ggccgcggcg
     6961 cgcgggggag gtgagaggat gactgccacg cagatagtcg tgacgctctt agggttcggc
     7021 ctcatcggct gggtggtctg gtacttctgg ctctgggagg gcgagtcggt cgaggcgcgc
     7081 gccggggccg ggggcttgca ggtcgttgac gtgacggtga agggcggcta ccagccggcc
     7141 gcgattgtcg ctaaagccgg ccggccgctg cgactgaact tcacgcgccg cgagtcaacg
     7201 ccgtgcggcg aggaggtcgt gctgcctggc ttcggccgac gcgcgcacct gcccgagggg
     7261 gagacggtcg ccgtcgagat gacgcccgcg gagccgggcg agtacgagtt cacgtgcggc
     7321 atgaacatgt ataaggggaa gataatcgtc aggtgacggg cgcgcgtgac agcggtcgcc
     7381 gggatgggct atgcttgggc gcgtagctct tagccgcgcc caagctaagg gctaatggtt
     7441 tcttgggaga ggtgcaggag tggttgaact ggcagcactg gaaatgctgt gtacggggaa
     7501 ccgtaccgtg ggttcgaatc ccaccctctc cgccattcag ttctgagtcg gcgcgccaga
     7561 tgagaagact gctgttgaca atctcggccc tcggcctgct gtgcgccgtc gcggcggcgg
     7621 ccggcgacgc ttcggcgcag aggcgcggca gggctcgtcc ccgccccgtc tgcggcgacc
     7681 cgaccgtgag gtgccgcacg accgcagtgt tccagccgca ccagttgccc ttcgaggtct
     7741 cggccagcga cgttatagtc gagagcgagc cgttctacat ggtcatactc aagagcgtgc
     7801 gcgacacggc gcaggacggc acggtcttcg tccccgagga cgagcgcctt gaggcgcaga
     7861 agctcttccc gcgccacaag gtcttcgcct cgcgcggcta cgagcccgac gagctctact
     7921 acgagggtac ggccgagggg cagcagttca tggccgtctt cgcgggacgc acgcgcgccg
     7981 aggccgggcg cgtgctcgcc agggtgcggg ccacgggcaa gttccccggc gcgaacctgc
     8041 ggcgcacgcg cactggcttt aacggcacgt aagggttaaa ctccctaccc ggcgcgtgca
     8101 tcgcgcgcgg cggcgcggcg catcaaaagg gttcttgaca atttatctga cttcgggctc
     8161 cgcacaacgc cagccccgcg aaccccgcca ggccgggaac ggagcaacgg tagcggcggc
     8221 ggcgtgtgtt gcgggttagt ccggagtcag gccagatcga aaggagttgc cgccgtctcg
     8281 ggcggggctt gccggccgcg tgccaacggc aacagccccg ccccggcgtc aactcctttt
     8341 cccgtttcgg cgatgaagat aaacattctg cggctcgacc acgtgcaggt ctgcgtcccg
     8401 ccgggcgccg aagagcgtgc gcgggatttc tacggcgggg tgctcggcct cgaagaaata
     8461 gagaagccgg aggcgcttaa gaagagcggc ggcctctggt acaacgtcgc ggacgtgcag
     8521 ctacacatcg gcgtcgagcc ggaggtcgcc ccgtcgaagc gccaccccgc cttcgaggtc
     8581 gaggacgcgg cgggcgtgcg cgcctacctc gaagggcgcg gcgtccgcac taaggacgag
     8641 gtgaccatcc ccggcgtcgc cgggcgcttc tccttcttcg accccttcgg caaccgcatc
     8701 gagcttatcg agaaggcgaa aagctgaaag ccgggcgctc ccctatgtcc taccaagtca
     8761 tcgcgcgcaa gtggcggccg cagaccttcg aggaggtcac ggggcaggag cacatcacgc
     8821 ggacgctgcg caacgccgtc gagcacgagc gcctccacca cgcctaccta ttctcgggcg
     8881 cccgcggcgt cgggaagacc accacggcgc ggctgctggc gaaggccgtc aactgccaca
     8941 agtccgacag gccgacccct acgccctgcc gctcgtctga cccggcggct tgcccgtcct
     9001 gccgcgagat agccgagggc cgttcgatag acgtgctcga gattgacgcc gcgtcgaaca
     9061 ccggcgttga caacgtgcgc gacgccatca tcaacaccat cggcgtgcgc gccgcccgcg
     9121 accgctacaa ggtcttcatc attgacgaag tccacatgct ctcgacgccg gccttcaacg
     9181 cgctcttgaa gactctggaa gagccgccgc cccgcgtgct cttcatcatg gcgacgacgc
     9241 acgcgcacaa agtccccgag accatcctct cgcgcagcca gcagttcgag ttccgcacca
     9301 tcgccgcctc gaagatagcc gagcgcctcc gcctcatcgc cgacgccgag aagattgacg
     9361 tgagcgacga cgcgctgcgc gaggtggcgc gcgccggcga gggctcgatg cgcgacgcgc
     9421 agtcggcctt cgaccaggtc atcagcttca gcgagggccg gatagaggcg gccgacgtcg
     9481 aggccgcgct cggcctcgcg ggaacggagc ttctctcgcg cgtgatgcgc gccgtcgccg
     9541 acgctaagcc ggccgaagcc ctcgcggtag ttgatgacct cgtggctcgc ggccacgacc
     9601 ttaggaactt ctgccgcgac ctgctcgcgc acctgcgcgg cctgctggtc gtcaaggtcg
     9661 cgggcgactc gtcgccgctc gccgacatca ccgaggccga gcgcagggaa ctctccgcgg
     9721 aggcgcgcga cttctccgag tccgacatcg tccgcttctt ccacagcctt acagagacgg
     9781 aggcgcgcct gcgcgagagc gcgcacccgc gctaccagtt agagatcggg ctggtgaagc
     9841 tcatcgagat gcgccggctc gcgccgctct cgcagatagt cgagcgtctg ggcgcgctcg
     9901 aagccgccct ccgcaacggg ggaggcacag gaagccccgg cgcgcagacg ccgcccgcca
     9961 gcgcccccgc cgccggcact ccctcgcgcg cgggcggtcg tggcggcggc gcggcctctt
    10021 tctccgccgc cgagcccggg ccgcagccgc aagccccgag cgcctcggcg cccgcccgca
    10081 cttcggccga gacctttaac gcgccgccgt caatcgccgc cgcgccgccg agcgcgacgg
    10141 cgcccgcccc ctcgaacttc ggcgcgggcc gcgccgcgac cgcctcgacg ccgaacctga
    10201 agctcgtccc gccgtcgagc ggcggcgcgc gcacgtcgga cgtacccttc cccgtcgccg
    10261 gccccgaagg cccccccgag ccgctctcgt tcttcgagga ggtgcgcgcg ggcgaagacc
    10321 gcgtgggcca gcccgtctcg ctaaggcccg cgagcgcgcc ttcgccggcc ggcgcgaccg
    10381 cctccgggcc tgcgcggggg ggggcgcgcg aggcgcaggc cgacgacgcc gcgagccgca
    10441 tcaagcgggg actggaagag cgctcgaagc ctttactcgc ggccgccgtg gacggcgcgc
    10501 gccgcgtgct cacagaaggc gaagaggttt acgtcgagtt cgcgcccgac acgaaacacc
    10561 tgcgcgacac gctctcgcgg ccggagaaca tgaggctgct gcgcgaggcc tgctgccagg
    10621 cgctcggccg gcaggtcggc gtgcgcgtcg aggttcgtgt gccgggcgag tcggacgacg
    10681 tgccgctcac gcggcaggac gaggagcggc tcgagcagca gcgcctccgc gagttcgccg
    10741 agaaccaccc tctcgtgcag aaggtcttaa agacgttccg cgccgagata atcgaggtca
    10801 agcgcataga cggcggccag cagcagcagt agcctgaaca aactcggcgg cgggggcgta
    10861 tagccttcgc ggaggtgatt tgtaaagatg cgtgatccgg ttctggctgg cctgcttagc
    10921 ttcataatcc cgggcgtcgg gcagctctac aacgggcaga ttctgtgggg cattctgtgg
    10981 ctgatattca cgcccggctt ttggataggc acgggcggcc tgctcggctg gctctgccac
    11041 atcatcgccg cctacctcgc ctactcctac gccaaagacc accccgtccg ctaggaagtc
    11101 gaagacggta gggccgcgaa aaaggtgaag gcggagggcg ccgctgccct ccgccttcct
    11161 ttttgcctag cggcgccccg cgtcagggct tctgcgcctc tttgggcggc gcggcgcgcg
    11221 ggatgtcgtc gtcgagaacg ggcgcgagca gctcggcctc gggcgactcc gtcttcatgc
    11281 gcggcgggcc gcggcgcagc acgggcggca ccttcgggcg cgggattttg acggtcgcga
    11341 ccgagtcggt gcgcttcagg atagtgccgc cccggcccgc gacccaggcg gccgtgccgc
    11401 cgaggtagga ggcgccgaag agcgacgcgc tcgtcaccgt cggctgcaac atccactcct
    11461 cgccgccgtc cgaagtctga agcacgcgcc cctgctcgcc caccaccatc acgtcgtcgc
    11521 gccccgcgac ggccaccgag tagaggttaa tctttaagcc cgactcctga tccttccacg
    11581 tcttcccgcc gtcgtcggtg cggagtatga ggccgcgctc gccgaccatg tagccgcgct
    11641 gcgcgtcggc gaacgccagc ccgtagagcc actctttggc gttaacgttc accgtgtccc
    11701 aactctcgcc gccgtccgtg ctgcgaagca ccgtgccgtt cgagccgacg gccacggccg
    11761 tcgcggggtc ggcgaaggcc acggcctcga tccagttctg cgtgaacgag gagcgaaggc
    11821 gccaggtctt cccgccgtcg tccgtcttca aaatcctccc gcgcgcgccg acggcgacgc
    11881 cgcgcgaggc gtcaacgaag tggacgccga agaggtcgtc ttcgatttcg gaggcggcct
    11941 gctcccacga gatgccgccc gtcggcgagc gcagtatggt gccgcgctcg ccgacggccc
    12001 agccccgcaa ctcgtcggcg aagaagaccg cgtgcagccg cgccgtcgtc cccgagggcc
    12061 ggagcgtcca gcgcttaccg ccagaagagg tgtagagaat gcgaccgcgc gagccgacgg
    12121 cccagccgcg gtcgtcgtcc aagaagaaga tgtcagcgag gtcgtcgcgc ccgccgtccg
    12181 tcagacggcg ccactgtatg ccgccgtcgt cggtgcgaag tatcagcccg tcccggccgg
    12241 cggcccatcc cgtgctctcg tcggcgaagt gaatggccgc gaggcgcggg cgcgtcttta
    12301 cgctcacggg gaaccatgtc agcccgccgt tgcctgtcgt gagcacctgc ccctcgtcgc
    12361 cggtcgccca gccgtgctcg gagtcggaga agaagaccga gagcaggtcg gcgcgcgtaa
    12421 gcgcgtccgc gaccgcccac gtctcgccgc cgtcctccgt gcgggccatc agcccgccca
    12481 tgccgacggc gactgcgcgg cccgtcgggc cggcgaaggc gacgctcgtg aagggaagct
    12541 cagtctcgac ggggcgcgcg acccacgtct ggccgccgtc gcgagtgacg acgagcgtgc
    12601 cgtcctcgcc ggccgccacg ccgttcttca cgcccgagaa ggagacggag tagaggtgcg
    12661 ccctcacgcc cgacttctgc gccgcccagg tcttcccgcc gtccgaggtc ttaactatct
    12721 gcccgtagct gcccactgcc cagccgtgca gcgcgtcggg cgcgaacgcg accgagtaga
    12781 ggtggtcgcg cacgccggtc tgtcgtatca gccaggtctt gccggcgttc gcggtcatga
    12841 gcacctgccc gcgcgagccg acggctacgg ccgtccgcgc gtccttgacg aagaggccgt
    12901 agagcgggac gggcgtcccc gagcgctgct ccttccagcg gaagccgccg tcctccgtgc
    12961 ggagtatcac gccggcggcg ccgacggccc atcccgtccg cttgtccgcg gcgaagcgca
    13021 ctgcgtagat ggcgttgccc tgcggcagtg ggttctgcca cagccacggc tgctgcgcct
    13081 gccgcgcgag ggccgccggc ggcgccgcgc aagcgagggc gagcgccgcg aggcacagga
    13141 gcgccgcgcg cttcgtcgtc gtagctggaa cgtatgcggc cataaaaagg cgtgcggtcg
    13201 ggagggagat tttagcccga acggggcgcc gggcctagcg cccagggaga tcgccataaa
    13261 ggcacagagg cacagagatc aaacaattct gagttccctc tgtgcctctg tgcctttatg
    13321 gctaattcta ccggccgccg gtggcgctcc ccgcgaccgc ttcggcggcc tcgctcagga
    13381 cttcgcggtc ggcgcggccg aggccggcta ccttacgggc ggcgcggtca acggcctcct
    13441 gcgcgacgtg gccggcgtgg cccttgaccc actcccacga gacgctgtgc ggccccgcgg
    13501 ccttgtcgag ccgctcccac cactcgtggt tggacttgcg ccggaagcgc ccgctcatcg
    13561 tctctacgac gtagcgcgaa tctgtcatca ggcgcacgcg gcacggctcg cgcaattgtt
    13621 cgagcccgag cgccgcggcc gctatctccg cctgctggtt cgtagcctcg cccaggtaga
    13681 gcccgaacgc gcgccaagtc cccatgtagc ccaaaagcgc cacggccgcc gcgcgcgccg
    13741 ccccctgccc gttccccagg ctcgacccgt cgcaatagat aaggacttcc ttcataagcg
    13801 cgcgggcggg cggtttctca cgcgacctcc tgggcctcgc gcgtgacggc gacgacgtgg
    13861 tcaacggact gctcgaaggt gtcgtcgtgg gagatgacga agagctggtc gaagtcgcgc
    13921 acctggccta tctgctgcgc gaggcgctcg cgccgctcgg cgtccatgtt gacggtcggc
    13981 tcgtcgaaga aggcgacgcg tatgtcggag agctgcttga ggagggcgag gcggacggag
    14041 agggccgcga ccatctgctc gccgcccgag aggttcacga aggggcgctc gtggccgccc
    14101 tcttcgagca ttatctcgta gtcgcgcgtc caacgcagcg ccctcccgcc ctcgcccgtt
    14161 atctctcgga agaggtggtt ggcctcaata gagatgttgt agaggtagct ttcggtgacg
    14221 agcgggcctg ccttcctgag cgtgtcgcgt atgaactcgg tcgtctgcga aagctcttcg
    14281 agccgctctc gctccctgag ctcctcgcgc atcgtctcgc gaacctcttc gaggcgcgcg
    14341 agctcggccc ggagcgctcc ctcgcgctcg cgcgcggctt cgagctgcgc cgaggtcttc
    14401 gcggcctcct cgcgtgcgag cgccagcgcc gcggcctcag aggcgtggcg gtcgcggtcg
    14461 tatgcggcgg cggcgcgctc gtgctcttcg cgtgcgcgcg cggccgcgcg ggccgcgcgc
    14521 gcggcctcct cctcggcgtc tcgggcggcc gcctggcgcg ccggcagagt cgaggcgagc
    14581 gaggcgcact cgaggtgctc gcggtaggcg tcggccgacg agtcgcgcag cgaggcggcc
    14641 ccggcccatt cggcgtcgag tcgcgcgaag cgcgcgagcc gggcgtcgag cgcggccgac
    14701 tgctcgcgca gggcggcgac agccttgagt gcctcctcag actcaagccg aagctcttcg
    14761 gcgcgcccgg cctccgtgcg cagcgccgcg gcgcggccgc gcgggtcgcc cagctctcgc
    14821 aagcggcgct cgacggcctc cgcgtccgcg gcgagcgact cctcgccgcc ggcaatcgcc
    14881 gcgacctgct cgcgctcgtc acggcgcgcc ctgccctctt cggttatctc ttcgagccgc
    14941 gcgcgaaggg gctcaagctc ggcgtagcgg agcgcgccct cgcgcgcgcg cctgagcagg
    15001 tcgtcaatgc cgatgatctg tgactgtagc tcgtcctgca acttctcgtc cgcgtccgcc
    15061 gagagcgctg ccatctcttc gtctatggcg gcgagcgcgg cctcgcgctc gcgcagaagc
    15121 tcgcggtcgt gcgcgaggcg tgcgcgcgtc gtctcgaagc gcgcggccgt cttctcggcg
    15181 tcgcgcgcct gccgcagctc gcgcgcggcc gccgtctgct cgcgctcgac ctgcgacagg
    15241 ctcgcgcggc ccgcttttat ctgctcgccg aagtgatcct cgaaggtgcg gccctcctcg
    15301 gcgaggttct tgcaggtctc gtggaggatg gggcagacgc cgccgcgggc gcgctcgctg
    15361 gcgcgctcgt cgcgcgcgat ggcctcgcgc aggcgcgcgg ccctgtcaga gagctcgcgc
    15421 tcgcgcgatt ctagctcggc cagatggccg gcccgcgcgg cggcctgctc gtactcgcgc
    15481 gcctcccttt cgagcgacgc gagcccgcgc cgcagcctct cgatttcgcg ctcggcctcg
    15541 cgcctctcgc gcgtgaggtg tttgcgcgac gtgagcgcct tctccacttt gctcaggcgc
    15601 gtctcgacgc ccatgcgctc gctctcgagg cgctcggcct cgccttgcgc gcccgcaagg
    15661 gcctcggccg cgcgcactcg ctcgcgcgtc tccgtgtgct ggcggcgcag gctctcgagc
    15721 tcgcggtcga ggcgcgtgag gcgctctcgg gcggcgcgcg cctcggcgag caggtcgcgc
    15781 aggcgctcgc gctcgcgctc cgactcctcc tgcgcggcga ggtcgccttc gagcccggcc
    15841 agcgcctcgc gcgccgactc ggcgcgtgcg agcgcgtcgc ccaggcggcg tgcgtcggcc
    15901 tcggccgcgg ccagtgtgcg cgcgacctcg gcggcctccg cgcgcaggag ctcgcgctcg
    15961 gcgcgctcgg cttcgaggga gcgcaggcgc tcggtcgcct caatgaactt ctcgtagccg
    16021 tcgcgcgtgg tgcgctggcg ctcgcccgcc gcgcgcgcgg cctcgagctc ggcgctgagg
    16081 tcgcccaggc ggcgctcggc cgactcgcgc tcgacttcga gccggacggc gcgggcgtgc
    16141 gcctcggccg cgcgccgctc cgcctcttcg agcgcggcga cgacgagcaa acgcgactcg
    16201 gcctcggcgc ggagcgagcc gagcgcggcg gtcagctcct caacgcgccg cgcggccgac
    16261 tcgtgctcgg ccgcagcgtc gtcgtagcgg gcgagttggg cctcggcgcc gccgatgcgg
    16321 acgcgcgctt ccgtgatgcg ctcgttgatg agggagacgg tgtcgcgcag tcgctcggcc
    16381 gactcgcggt actcctcgac cttgagcagg cggtcgaaag acttcttgcg gtcggtcggg
    16441 gtctgtagga agtccgaggt gaagagcccc tgcgggacgc ctatggcgga gcggaagaga
    16501 gccttcagat cggtgccggg ctcgatgccg aggtgcaggt cgagccactt gcgcacgtcg
    16561 gccttgcccg aagcgagctt catcttcagc tccgggtcat agacgtagta gcccgtcccc
    16621 gtgtcgcgat agacgacgta gaggcgctcg tccaggtcgt tctggaaggt gacgcgcacg
    16681 gtgccgcgct tggcgccgcg ccgcaggaag tcatccttgc tgtagtcgag cacgtcgaag
    16741 agcgcccagg cgacggcctc cagtatcgtc gtcttgccgg cgccgttcgg cccgacaata
    16801 gccgtcgtcc cgcgctcgaa cgcgaacgcg ccgcgctcgt acgacttgat gttctcaagc
    16861 tctacccttg tgacgtgcat gggaaaagta gccggtagtc agtagccggc aggaagacgg
    16921 cggccgcacc gcggagcccg ccatctgctg actaccggct actgtctcct gactactgct
    16981 ttcttgtcaa aggtcttcga tttttagctg ggtgtctgcg cccttccatg cgcgctcgaa
    17041 ctcgcggcgg acgaggtctg cttcccgcgc tttaccttga gccttgaggc tctccgagag
    17101 gccgaagagc gagcggccgt tgcggcggtt gcgccggagg tcttcgcgga agacggcctc
    17161 ggcctcggcg aactgcttgt cgagcatgag cgcgccgccc aggctttcgc gcgagagcgg
    17221 gtgataccag ccgggcggct cgtcgtaggc gagcgcgtcc tcggcggcga cggcctggcg
    17281 caggaagttg atggcagcct tccggtcgcc gcgcgcggag gcgatgcgcg cgttcaggaa
    17341 gtgctcggcg atcttcagca cgtctctcgt cctgttctgc ccgtaggagt cctcgggcgg
    17401 gacggcctgc gctttcgcga ccaagttcct gaggtcggct tcggcctcgg cggtcttgcc
    17461 cgtggcgacg tgcgccatgc cgcgcgccca gtgccagagg gcgttggtgg cctgcatcgt
    17521 ggccggcggc tccgtcgtct tcagaatctc gtcccaccgg ccgaagcgcg ccgcgatgag
    17581 agagcgcgtc ggcatgaagc tctcgaagaa gggcatctcc ttcaggtacg gctcgacgtt
    17641 ctgttcgagc ctacgggcgg cggcgaccgc ggcggcgtag cgcccccgca tgctctcggc
    17701 ggcggcgagg aagtgcaggt tgtggctgta gtacgcggcc gagtatatgc cgcgaaggcc
    17761 gccccgcgac agatattcct cgtcaacctt cgccgcccac tcgttgctct tggcggcgcg
    17821 ctcgtagtcg cccgtgcgca tgtatatgtg cgcgggcatg tggacgagat gaccggaggc
    17881 gggcgagagc gccgtgaggc ggtcggcgct caggagcgcg cgctcgggcg cgtgcgaagc
    17941 ctcgacggcg tggatgtaga ggtggtgcgc gcctatgtgc tcggggtcgc gacggaggac
    18001 tgattcgagg gtggcgatga cctcctcggt gccttcggcg gccgagccgt cgggcttaaa
    18061 gagccgccac gcgttcagga tcatcgccgc gtcggcgtag agcgtcgcgg cctccgtgtc
    18121 gtccgggtag cggcgcgcga gctcgcccat cgcgtccctg taggcgaccc agagcttcct
    18181 ctggtcggca cccgcgtcgg cggagaatcg cttcgagagg gcctcgaggt aggcgcgctc
    18241 gtgctcgggg ccgccggcgg cgagcgctaa tcctttttgc acggcttcgt gcgcggcctt
    18301 caggcgctcg ggcgggatcg aagtctggtt gtagttcggc ccgagcgcga gggccaggcc
    18361 ccagtgcgcc atcgccatgc gcgggtctag ctcggcggct cgccggaagg cgcgcgcggc
    18421 ctccgcgtgg ttgaagccgt aaacgagtat caggccctgg tcgaagaact tctgcgcctc
    18481 ggcgctcgaa gtcctgaccg gcaggtggaa gctgcccaag tccggcatga gcgcggcggg
    18541 cgcttccggg ctgcgcgccg gcgcgtggtg ctgcgccgag gccgaggccg tgcatagaag
    18601 cagagcgagg gcgagcaggg gaactctcat cacaaaccct cctttaagaa tttagacttt
    18661 cgcgttgcgt cgtccgcagc gaggcgcggc ccgagctcac gccagctctt cgtgctcgaa
    18721 cagcgcgaag tccgtgacga ggctcatgac ggcgccgctg tcgtcgcggc cgaggtaaga
    18781 agcgtagagg ccgtcgccca tgccggtcga gaacacgatc atgttaaggc ccgtcgccgg
    18841 gtcgaattcg acgctcgccc aagaccacgt gtcaacgtaa gtctcgtcga gcaggtcgcc
    18901 gacgcggtcg aagaactcct cgtcggcttc gatcgcgtcg aggtagcgcg ctgcggcctc
    18961 ctcgtccgcg aagcagcccg tcgcggagtc caccgcgtag ccgaagactt cgccctcgcc
    19021 aagctccgac acgtcctgcc ccggcagcag cgccatctcc cactttgtcg ccgccccctc
    19081 gccaaccttc agcatcgcgc ccgcgaccct ctggtcgccg tcctcgaagt gcgcgacgct
    19141 caggacgacc gggtatctcc ccggcggcag cgcctccgcg aaggcttccg tctccggcga
    19201 ggtggccggg tcgaacgccg ccacgcgccc cgtagtcaac accaactcgc ccgccgcgtg
    19261 aaccttcagc gtcaccctcc cgaagtcggc cgactccacg acccttccgt cctcaaacag
    19321 cttcgagaaa tccgggggcg acatggggcg ctactcgttg accttcagca ccgcgaggaa
    19381 ggcttcctgc ggaatttcga cgcggccgac gcgcttcatg cggcgcttgc cctccttctg
    19441 cttctccagg agcttgcgct tgcgcgtgat gtcgccgccg tagcacttgg cgaggacgtt
    19501 cttgcccagg gccttcacgg tctcgcgggc gatgaccttg ttgccgatgg cggcctgtat
    19561 cggcacctcg aagagctggc gggggattag ctgccgcatc ttctccgcca gctgccggcc
    19621 gcgcgcctgc gatgcctgcc ggtggacgat aatggagagc gcgtcaacgg gctcgcccgc
    19681 gaccatgagg tctaacttga cgaggtcgct ctcacgatac ccggcgaggt ggtaatcgag
    19741 cgacgcgtag ccgcgcgaga ccgatttaag gcggtcgtag aagtcgagca ctatctcgtt
    19801 taagggcagg tcatagacga gcatcacgcg cttctcggcg atgtactcga acttcttctg
    19861 cacgccgcgc ttctcttcga gcaaggggag tatgccgccg aggaattcgt cggtggtgag
    19921 gatggtcgcc tcgattatcg gctcctctat cttcgagatg cgcaccgcgt cgggcatctt
    19981 agcgggcgag tcaacctcta tcgtctcgcc gtcggtggtc gtcacgcggt agcggacgcc
    20041 cggcgccgtc gttattaagt ccaggtcgaa ctcgcgctcc agcctctcct gcactatctc
    20101 catgtggagc aggccgagga agccgcagcg gaagccgaag ccgagcgcgg ccgaagactc
    20161 cggctcgtag aagaaggagg cgtcgttgag gcgcagcttg tctaaggcgt ctctcagctc
    20221 ctcgtactgg ttggcctcga cggggtagag ccccgcgaag accatcggct tgatctcctg
    20281 gaagccgggg aagggctcct tcgtggggcg cgcggcctct gtgatggtgt cgcctatctg
    20341 cacgtccgcg acggtcttga tggacgccgt gaggaagccg acctcgccga ccgagagaga
    20401 gtcaagcggc gtcgggcgcg ggcggttcac gccgacggac tcgacctggt agtcgcgccc
    20461 cgtgttgaag aaacgaatct tcatgccggg cttgatcgag ccgtcaatga tgcggaatag
    20521 gacgatgacg ccgcggtagg agtcgtacca cgagtcgaat atgagcgcct tcaggggcgc
    20581 gtccgcggag ccattcggcg cggggatgtc gcgcacgacc gcttcgagta tctcggggac
    20641 gccctcgccc gtcttggccg atgcgagcac ggcgttgtgt gtgtcgagcc cgatgacgtg
    20701 ctcaatctgc tccttcacct tgtcgggctc ggcgccgggc aggtcaatct tatttatgac
    20761 tgggattagc tcaaggttct cgccgatggc gaggtaggtg ttcgcgagcg tctgcgcctc
    20821 gacgccctgc gaggcgtcaa ctattaggag cgcgccctcg caggccgaca ggcttcgcga
    20881 gacttcgtag gagaagtcaa cgtggccggg cgtgtctatg aggttcagga cgtactgcct
    20941 gccgtcgcgc gcctggtagt cgagccggac ggcgtgcgcc ttgatggtta tgccgcgctc
    21001 gcgctccaag tccatgtcgt cgaggacttg ggcctccatc tcgcgctccg acagagcccc
    21061 ggtcaactcc agcagccggt cggctagcgt ggacttgccg tggtcaatgt gcgcgatgat
    21121 cgaaaaattt ctaattagct cgggcttcat ttttaagcta tcagcggtcg gctttcagct
    21181 ttttgtctct agctgactgc cgaccgcttt attgctgaaa gcttaaaata acaaaacggg
    21241 cgggaaaccg cacgctgccg ccgatttcac ttgccgaggg cgggctggta gctgccctct
    21301 gggcgggcgg cggcgcgggg tgtcgtctgg gcgggctgcc cggcggcgcg cagggggatt
    21361 tcgattgtga cgagggtgcc gccgcgcggg tcgtcggcca tctcgaagtt gtagtcggcg
    21421 ccgtaaagct gttcgagccg cgcgcgcgtg ttcgcgaggc cgacgcccgt ctgcgaagcc
    21481 ttgccggccc gcgcgcccgc cgtcaggccc ggcccgtcgt ccctcacctg aaggcttaag
    21541 actgcgccgc gccgctcggc ctttatctcc acgcggccgg gcgcggagcg cgtggcgatg
    21601 ccgtggcgta tcgcgttctc gacgatgggc tggaggatga ggttggggac gcggcagtta
    21661 agcgcgagcg ggtcaacgtc tatgcttgtg gtcagcctat cgcagaagcg tatgcgctcg
    21721 atgccgaggt aacattcgag gaactcgagt tcctgcctga gcggcacctc ctgcgcggcg
    21781 gccgtatcga gcgtcaggcg caggaagtca ccgagccgcg cgatcattcg gtcggccgca
    21841 ccggggtctt tgtgcaccag ggccgagatg gagtgcagcg cgttgaagag gaagtgcggg
    21901 tgtagctgca tcttcagggc ctgcaactgc gcctgcgacg cgcgcagctc gccctctcgg
    21961 tagcgctggt ggtagtcgag ggcgtggctc acgaggacga cgatgcaata gacaaggagc
    22021 tgcttgtcga agttagcgaa caccagccgc gcgaggttcg acggcgtgag cgtgctcagg
    22081 ttccccgaga accacaggtc gagcgtgacg tggcacgcgg cccacgcggc cgcgatggtt
    22141 gtgccggcgg cgaagtggac gagcagccgc cgccgccagt tgttgcgctc gacgcggaag
    22201 cggcgcgcga gccacagcac cagcggggtg ccggccgcga acacccacga ggccagaacc
    22261 tgccacgcta tcgcgcgcgt gagaggcacg ggcttctgcg tgcgtatgaa gtagaagtaa
    22321 atctggctcg agaagaagag ccccacgagc gtccacaggc cccagatgaa accgagccgt
    22381 gccgccccgt gccgccagtc cccgccgccg cttcttacgg cggccctttc gtcgagctcg
    22441 aacatagcgg cccaataatc tcaacaacgc acgcctaaga caaggcgcgc cacggccgca
    22501 cgtaaaaaac agggcggcgc cgtggattaa cgtacttctt tttggaattc tgcgcgatta
    22561 cggggtgtcg gaggggcgat ttggtgcgct gctcgctcac atgccgagca cgctgctcag
    22621 ggcctcccag acgcggcggg cctcttcgcc gtgtacgacc acttcattcg tgccggggcg
    22681 cccctgcgcg ggagggttcg tgtcgaagat gatgctcaag acctcatgcc cctccgcgtc
    22741 ctggtaggcc acgtactgaa tcctgtctat gttgaccagc agcgtagccc cgtcctctcg
    22801 cgtcgcggtg atgaaaggca tcgggctact ccgtgggcgc tcagcgcgcg tcgcgggcga
    22861 ggagggcggc gccgatgggg acggcgtcgg cgccgaggga ggcggcgagt atctgcgtgg
    22921 actcgaagca gggctggaag gagcggcggc ccgcctcgcg tatgatgggg ttcaggataa
    22981 gctcgccggc gtccatgacg ccgccgccga ggactacgcg ctcgatgttg aggaggttga
    23041 tgacggcggc gacggccgtg ccgatgtagc ggcccgtgcg ctcaatcatc agtagcgcga
    23101 agtcgtcgcc gcccctcgcc tcgtgcgcga tgtcggcggc ggtgaagttc ttcgtcaggc
    23161 cgaggcgcga gagcgaagag gtcgagtcgc gcagcagccg ctcgtgcgtg cgtcggacga
    23221 tgttcggcgc cgacgcgacc gtttccagac acccgacgtt gccgcacgcg cactcgacgc
    23281 cttcggggtc aatcgtgatg tggccgaact cgcccgcgaa gccggaggcg ccgcgccaca
    23341 gccgcccgtc gagaatgatt gcgcccccta tccccgtccc gattgtgacg tagaacatgt
    23401 cgcggctgcc gcgcccggcg ccgacggcgt gctcgcccac ggcgcccgcg ttcgcgtcgt
    23461 tgtcgagcac gacggggagg ccggtcgcct gcctcagctc ctcgcggaag tcgccgcgca
    23521 cgaccgaggg caggtcggac gagatgatga cgcgccccgt gcgcgggttg acgaggccgg
    23581 gcaggccgac gcccacggcg gccacgcccg agggggaagc gtcgcggagc tgcgcggcgg
    23641 cgcgggcgac ctgctgcgag acttcggatt cggagagcgc ggcctcgaag cgctcgagga
    23701 cgcggcccga ggccgagacg agcgcggcgc gcagggccgt ccccgaaagc tctacgccga
    23761 cgtaatgctc ttcgtttggc ggcgcggcgg tcatccgaga agcccttccc ttgtcgagtg
    23821 atttaaacgg ttaagacggc cggcgagaat tcggcgcgat ggtaacaaga ggttcggggg
    23881 gctgtcaaac aacaccctct gcgtgtagaa tgcagcgcgg ggcgttcgtc atcccgcgcc
    23941 cgtccccgcg gtcgcctatg cgaatcagca cgatactcct gccgacggac ttcagcgagt
    24001 gcgcgcgcca cgccgtcccg gccgcggcgc acctcgcgcg gctgcagggc gcgcgcgtca
    24061 tctgcctgca cgtcgtcgag cccgtcgtgc cttcggtcgg gtggacgccg atagccgagc
    24121 cgctccccgt cgcggacata agcgagcagt tggagacttc ggcggcgagc gagctgccga
    24181 agttcgccgg ctgcgaggag ttcgaggggc tcgacgtgga agacctgata gtgcacggcg
    24241 aggcgtcggc cgagatagtc aacgtcgcgc gcgcgcgcgg cgccgacctc atcgtcatct
    24301 cttcgcacgg gcgcacgggc ctgggccgca taatcttcgg ctcgacggca gagtcggtgg
    24361 tccgccacgc gccctgcccc gtgctcgtcg tcaagccgcc gcacggaagt gatgagtgac
    24421 gggcgaaggg tgacgagtta aagcaaactg ccttgacccg tcgcccgtcg cccctcactc
    24481 atcactcatt ttatggactt acagtacgtc aacaacattc tggcgtcgtt cgggctgccg
    24541 gccatcttcg ttctgacgat gctggagggc gacataacgc ttctgctcgc gggggttctg
    24601 gcgcacgggc aggcgttcgg cgactacagc ttcgcgcagg tgctcgcgac ggggacgctc
    24661 ggcggcgtgg tgagcgacaa cgtcgcctac ttcctcggcc gcggcgcccg ctcgggcgtc
    24721 aagaagtacc gcttctactg catggcgcgc ccgcgcatcg agcggctgac ggacaagttc
    24781 gggccgctct ccatcttcgt ctcgaagtac acatacggcc tgcgctgggg cgcgtgcgcc
    24841 ttctacggcg tggcgaagat gccctacggg cgcttcctgc tgctctcctt cgcgagctgc
    24901 ttcgtgtggg tgctgagcct ggcgggcgtc ggctacgtct tccacagcgc catctacaac
    24961 ctcatcggcg acttcaagca cgtcggcgtc gtgctgctcg ttatcatcgc cctgggcata
    25021 gccggcttct acttcgccga gcgctactgg ctctcgaaga aggtcgagga ggcagacccg
    25081 gagcgcatac acaagctcga gcaggccgcc ggggacaaac tcaacgagat caaagaggag
    25141 atacaggaga tattccccca cccgctctcg cgccacaagg agccgcccaa gcgcaagggc
    25201 aaggcggagg gggactagga gaggcgacga gtgacgagtg acgggcggcg agccggcata
    25261 gctcgtcact cgtcactcgt cactcgtcac tcgtcacttt ctttatgatt atcgaatcca
    25321 cagcaccgac ccgcgttgac ctcgccgggg ggactataga catctggccg ctgtaccttt
    25381 tccaccccgg cgcgagcacc gtcaacttcg gcatcacact gaacgcgcgc gtccgcatag
    25441 agacgcgcga cgacgaccag gtcatactcg aatccaggga tcgcgccgtc tccttcgaga
    25501 cgagcctctc ggagatcgag agcctcgcgc gcgaggagcg acttgagctc atctccaagc
    25561 ttgtgcactt cttcaaaccg gagaccggct tcaacttgat cgcggagtct gccgcgcccg
    25621 cgggcgccgg cctcggcggc tccagctcgc tcgcaatagc ctgcatcggc gcgctcaacc
    25681 gcctgtgcgg cgaccgctac cccgagcgga aattcatcat catcgcagcc aacgtcgaga
    25741 cgaccgtgat acgcgtcccc gcggggttcc aggactacta cggcgccttc tacggcggcg
    25801 ccaactgcgt agagttcagc gccgagggca tcaggcgcga gcccgtcaac ctggacgcgg
    25861 cggagttgga gcggcgcctg gtcataatct acacgggcga gccgaggctt tcggggacga
    25921 acaactggga gattttcaag aagcacatag acggcgaccg cgagctgttc ggcctcttcg
    25981 aggggatacg cgactcggcc cggctgatga gggtcgcgct cgccgcgaac gactggcgga
    26041 gggtgggcga gataatgcgc gaggcttacc cgaaccgtaa gcggctcgcc ccgaacgtga
    26101 cgacgccgca catggacgcg ctggtggggc gagcgctcgc taacggcgcc gtggccgcga
    26161 aggtctgcgg cgcgggcggc ggcggctgca tcgctttcct ctgcgaggag ggcgcgaagg
    26221 agtctgtcga gtcggcgctc gccgccgagg gcggcgcgga ggtcttgcgc tggagcttct
    26281 cccgcgacgg cctcgtcgtc cgcgagcttt agacggcagc cggccgcaaa aggctagagg
    26341 gttgacgaca gctcgactgt cgtcaaccct ctttcttcat cccgaaatct ccggcgctta
    26401 gagtttgccg gaggcgcgct tggcctcttc ggcgatgcgc ttgaggcgcg ctatcttctg
    26461 ctcgggcgtc tcgcccggcg gggccttgag caactcgggc gggattttga agccggcgcc
    26521 ggaagccttc ttgggcttgg cctcggcggg cttcgcctcc gccgtcgcgg gcctctcgtc
    26581 cttcggcgcg ccgggcgtca gttccgtcga ggcttcgggc gcgaggtctg agacggtctc
    26641 cgcgcccgcg gcgggcgagg cggtcgcggc ggccgggctc atcggcgcgg ccgaagcccg
    26701 gcccgtcgcc gcctgagcct ccgcggccgg gcggtgtttg tcggccgagg gggaagagtc
    26761 tgccggggac gcggcggccg gggccttcgc cgcgggcgcg ggcttgactg ctttaacagg
    26821 tttcggcttg ggctcgccgc gccacgcggg cgtggggtag tcgtatgcgg ggagcgtgcc
    26881 gcccgcggcc tgtagaatag ccgcgaggtc gcgctcgacg tagcgccgct gcttgcgcgg
    26941 gtcgcgcacg tggcccatcg gcggccccat gtagagcgcg ccgcaggtct ggcactggta
    27001 gagcacgtcg tcgccgcgca ggtaagccgc cgaagggtgg cgcgtatctt tctgcttgag
    27061 gtggccgatg cagagcttgc ccttctcgtt cttctcgttg cagacggt
//
LOCUS       DASPKR010000546        12303 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_339488, whole genome shotgun sequence.
ACCESSION   DASPKR010000546 DASPKR010000000
VERSION     DASPKR010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12303)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12303
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339488"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..613)
                     /locus_tag="VD968_14725"
     CDS             complement(<1..613)
                     /locus_tag="VD968_14725"
                     /inference="COORDINATES: protein motif:HMM:NF016408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HYE15694.1"
                     /translation="MFRPGRNPKDQTTTTDDTADHTPQTSSPYGGGAGYGGSSPSAGG
                     QTPTEAYQQSVHTQTTSRAVTESESLARDIKEGTLTGFVGNGTTLTGEANFKGMLRVD
                     GTLSGRVSSADGTLIVSTNGQVDANVAVAVAQIYGTVNGDIVATKRIELGRVARVTGN
                     IQTPALVIENGAVFEGNCRMAQLKEQAAQPNGEAASASASASGS"
     gene            957..1634
                     /locus_tag="VD968_14730"
     CDS             957..1634
                     /locus_tag="VD968_14730"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYE15695.1"
                     /translation="MAGRMVEFQSNGGKTAGYLSVPEGGRGPGVIVIQEWWGLVAHIK
                     EVADRFAAEGFVALAPDLYHGRETKSPDEAGKLMMALNIAQAEKDLRGAVEYLAGHEA
                     VEGERVGTVGFCMGGVLSLYAASKNDGVGACVVFYGIHPKVEPDLENLRAPVLGLYAE
                     RDQFVPPDAARALEARLKELGKRAEFHIYPGADHAFFNDTRPEVYDAEAAADAWRRTV
                     EFFRASL"
     gene            complement(1725..2963)
                     /locus_tag="VD968_14735"
     CDS             complement(1725..2963)
                     /locus_tag="VD968_14735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15696.1"
                     /translation="MRTTKSSLIRMAGVLSVLVLLGAAALPSASAQLIISEFRYRGPN
                     GANDEFIEIYNNSGADHTVNSPSSPSTGYGVFASDGMLRCSIPDGTVIPNRGHFLCIN
                     SIGYSLASYPAGNGTTAIGDATYTLNIPENVGIALFATNVAAEVALANRMDAVGTTAE
                     ANTLYKEGTGLPTLVGFSIDYAWVRDTCGKGGSITTFGPCPTGGLPKDTNNNASDFYF
                     VDTNGTSAGGGQRLGAPGPENLSSPIRRNESVAVSLLDPCVAGASPPNRVRDFTSDPA
                     NNSTFGTLDVRRTIVNNTGANVTRLRFRIVDITTFPAPSGIADLRPRTSTDVVVTVDR
                     APCGSGTSNVLVNGTTLEQPPSQPNGGGFNSSMSDNDVTLATPLGVTPGVNNTKDVRF
                     LLGIQQNGSFRFFINVEVLP"
     gene            3266..4126
                     /gene="ttcA"
                     /locus_tag="VD968_14740"
     CDS             3266..4126
                     /gene="ttcA"
                     /locus_tag="VD968_14740"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013345422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HYE15697.1"
                     /translation="MFVESKIKTKLLRQMGEAIKDFHMIEDGDRVMVCLSGGKDSYTM
                     LDLLLDVRRRAPVRFDLLAVNLDQKQPGFPADVLPNYLKERGVPFRIVERDTYSVVKR
                     LVPEGKTYCSVCARLRRGILYQTAVEEGCTKIALGHHADDIISTFLLNLLYVGTLKAM
                     PPVLRSDDGRNTVIRPLAYCRESDVAAYAAEKGFPIIPCDLCGSQTGLKRARVKRLIT
                     ELEREIPNVRASMLTALGNAAPSHLLDPALFDFKNLRAASGDVEAELDAALGHTDAPD
                     SPALVSIASN"
     gene            4133..5176
                     /locus_tag="VD968_14745"
     CDS             4133..5176
                     /locus_tag="VD968_14745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15698.1"
                     /translation="MPAAKKKAAKKAAKKKAAAKKPAAPKKTAARKAAPAKKRAAKPV
                     GKASPPAKKKAKADVLDFGDFPAGSVTRHSTAICLACVFNLFTKQLGLAPRTAYAEVR
                     RYAPTVEELTAREPQRPFFKTSESRDARCPFCDAPRRWHARVDAHRIEGGAQADSARR
                     ALVRRLPARDEQFQVHEIKKTARALFFEWLDRLGQGLDFEDDRAWMTAAALAYLQRRE
                     PRTDWAAQFAGVRQVRRSSRLEDGFERDGDRLYLSPALYSDVLLVQYLVSRSHRHGGR
                     TFEGRLTLIELVRRLRHRGHLDAQGITERDQFEVLEQLVEHLTGGDRPAKLHFIVDRR
                     DLLEKAKKAGARG"
     gene            complement(5219..6361)
                     /locus_tag="VD968_14750"
     CDS             complement(5219..6361)
                     /locus_tag="VD968_14750"
                     /inference="COORDINATES: protein motif:HMM:NF042637.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6569 family protein"
                     /protein_id="HYE15699.1"
                     /translation="MNHVRVSGIPAGVLMTFALLAVCLALLPSGGWATRAGAKGNRQR
                     GGDAWSVLPPVSYKNLTLFPVRGPNTAPAGDYVTLDEGIKRGTVEITERGAGQMVRRQ
                     VRGRAQQVNMTAGDGATVNQLALVNRSGKKLLLLSGEVIVGGKQDRIVQEDRIVPPVS
                     VPVSIDVFCVEHGRWSQRASAGSAGAPVIAPSAQPRKAENFYSLGAVAHPKLRGAAQD
                     KKEQTEVWKEVSDNNARLGTDNTTGTYQEVYASKKVAGQLEEYIAALQKEVLQPGVVG
                     VIVARNGEPVWADVFASQTLFAAYWPKLLKSYAVEAVGDYKSDEKPTVEQARRYLSER
                     DGTVSTAGLAGVYQLVKTEHPEYAVFVLSDISLPAPLRLHFNKMER"
     gene            complement(6510..8237)
                     /locus_tag="VD968_14755"
     CDS             complement(6510..8237)
                     /locus_tag="VD968_14755"
                     /EC_number="6.3.5.1"
                     /inference="COORDINATES: protein motif:HMM:NF010588.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HYE15700.1"
                     /translation="MRVTIGQIDTTNGDYEGNTEKILRAIEQARREKSDLVVFPEVAV
                     QGYMSLDWFLDRDIVESSLKPLEKIIPATEGITAVVGTVRPTGAEHGRKLFNSAAVIR
                     DGRLLGYADKTLLPEYDVFDDPRYFESARERRLFEVGGEKLGVVVCEDFWNDKTFWRE
                     RLYAHDPTDEVIEMGATVVVSPNASPFNKAKMAQRCSMVQHRSKAHGLPVVYVNLVGG
                     NDGIIFDGASLVTDCRGETILQAPPFEEFVGTVDLECGVRDEACLPGDDIETVRRALV
                     LGVRDYARKNRFTRAVLGMSGGIDSAVVAALACEALGPENVLGVMMPSPFSSRGSIED
                     SLAFGRNTGMPLVERPISGAYGVLVKELGLANPTRSGESLAAENLQSRLRGNILMSVS
                     NAEGRLLLSTGNKSELALGYCTLYGDTNGGLAVIGDVLKTEVYALARHLNRDGEVIPW
                     AIINKRPSAELAPDQFDDQSLPPYDVLDPVLRLYFEKKYSPEQIVSEGHDRALVYDIL
                     NRVESPANEFKRRQLPPTLIISRNAIGIGRRRPVTHRYRRRPPAQFAEAAPPAPDPRD
                     DGRAREAKT"
     gene            complement(8353..8499)
                     /locus_tag="VD968_14760"
     CDS             complement(8353..8499)
                     /locus_tag="VD968_14760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15701.1"
                     /translation="MRDPEKLLPLTPSDFHILLALADSERNGYGIIKEVSGEIKFLGG
                     ARPN"
     gene            complement(8589..11435)
                     /locus_tag="VD968_14765"
     CDS             complement(8589..11435)
                     /locus_tag="VD968_14765"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE15702.1"
                     /translation="MSFQPGARVGRYEIQDLLGAGGMGEVYRAFDTELRRPAALKFLP
                     AEIAADPKRLARFEQEALAASGLNHPNIVTVYDVGQAEDGRRFFATELVDGVTLREHV
                     KRRPLRLGEVLDIAAQVASALVAAHAEGIVHRDIKPDNIMIRRDGYVKVLDFGVAKMS
                     GRPDSSVDPEAATRALVVTDAGAVMGTVSYMSPEQAGGGEVDARTDIWSLGVVLFEML
                     TGHLPFKGKSASHTVVSILDDEPAPLAQYLADAPEPLQEVISDALAKDPEARFQTAKQ
                     MLAKLQRLKRRYEAGGSLEHSLTPEAPAQSGEQIARTASLSGAGATQTGGHQRTTVRS
                     GELFNTPTGEAAAARTTAGLGGRGTKLKLLAVLGSLVVVVGGAFAIYRYAARRHGAGA
                     PFAPLASMKLSKVPASGATVSAAISPDGKYAARVVFETGRQSLRLRQLGATSERDLVP
                     PDNAIGFMGQPAFSPDGAFVYYVVGRKGQSFREMLRVPLLGGEPQKIVFDVDSGPALS
                     PDGKRVAFRRHMPKERDDTLVVVDTDGANEQTLASYKLPERIDSPAWSPDGRTIAYTV
                     NRVDDQGYYMNVDAVNVADRSVRTVSPARWRQMITLAWLSDTTGLITAARDRASLSST
                     PIQLWYVPFPEGEAQKITNDLNNYVGVSLTSDSRTLLAKQGRDTSNIFIAPGGDSSRA
                     RQATSVGFNGSTGLSWLPDGRVVYDSDASGNADVWVMNADGTGARQLTFDPNLDIVPS
                     VTPDGRYIFFRSNRGAGWGVWRMNSDGSNAREVIRNVDNNQTMGLQFTPDSRWLYYVS
                     RDESGRPAIWRAPVEGGDPQKILSDKVGYVRLSPDGKTIFSTYQEPVLDAPVKIYLFP
                     SEGGAPLRELDAPPEMLDLRDWSPDGQAIDYVVTTDGVANVWRLPLSGGRPRQLTDWK
                     SDFIYRFAWSPGGRQLAASRGNATTDLVLIKDFR"
     gene            complement(11592..>12303)
                     /locus_tag="VD968_14770"
     CDS             complement(11592..>12303)
                     /locus_tag="VD968_14770"
                     /inference="COORDINATES: protein motif:HMM:NF014585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HYE15703.1"
                     /translation="VAYVFRCLVRADDVPASAGLVEPIELIAPRGTVVNAAHPAPVAG
                     GNVETSQRIVDVLFKALAEALPARVPAASQGTMNNLTVGGFDPRTGSEFAYYETVAGG
                     MGARPSADGVSGVHTHMTNSLNTPAEALEYAYPLRVRAYRLRKGSGGRGARRGGDGVV
                     REIETIVPARMSLLSDRRELRPYGLAGGGAGLPGRTVIISGGRSRAVGSKGSWELRAG
                     DRVRVETPGGGGHGEERE"
BASE COUNT         1934 a         4102 c         4215 g         2052 t
ORIGIN      
        1 acgagccgga cgcggaagcc gaggccgagg ccgcttcgcc gttcggctgc gccgcctgct
       61 ctttgagctg cgccatgcgg cagttgccct cgaagaccgc gccgttctcg atgacgagcg
      121 cgggggtctg gatgttgccc gttacgcgag ccacgcgccc cagctcgatg cgcttggtgg
      181 cgacgatatc gccgttgacg gtgccgtaaa tctgcgcgac ggcgaccgcg acgttggcgt
      241 caacctgccc gttcgtggag acgatgagcg tgccgtcggc cgaggagacc cgccccgaca
      301 gcgtgccgtc cactcgcagc atgcccttga agttggcctc gcccgtgagc gtcgtgccgt
      361 tgccgacgaa gccggtcaga gtcccctcct tgatgtcgcg cgcgagcgac tcgctctccg
      421 tgacggctcg cgaggtcgtc tgtgtgtgga cggactgctg gtaggcctca gtgggcgtct
      481 gcccgccggc ggagggggaa gagccgccgt agcccgcgcc gccgccgtag ggggaggagg
      541 tctggggggt gtggtcggcc gtgtcgtctg tcgtggtcgt ctgatccttc ggatttctgc
      601 ccggtctaaa catttcgcat tctccctgaa aagctcagat ggttagtgtg gcccggcccc
      661 gccggggccg ctcgcgcgcc gcgcccctcg ccagtcgggc tttttgtgtg tgggcggctg
      721 caccggccgc gcggcgcccc gattgagaat gaagacgaat tcgggagagg tcgttctaac
      781 gagaccgccc ggattgggaa agctgctagc ccctgaaagc gggcagcatg ataagacaaa
      841 aaccgcaaat agtaaatctt gaaatagcgc gacggccttg agccgcgggc gcccgccaaa
      901 ttagaatggc cgccgccgaa gtttcacaag cgaaaacatt caggaggctt tccaggatgg
      961 cggggcgcat ggtcgagttc cagagcaacg gcgggaagac ggccggctac ctctcagtcc
     1021 ccgaaggggg acgggggccg ggcgtcatcg tcatacagga gtggtggggg ctggtcgcgc
     1081 acataaaaga ggtggcagac cgcttcgccg ccgaggggtt cgtcgcgctc gcgcccgacc
     1141 tctaccacgg ccgcgagacc aagtcgcccg acgaggcagg caagctgatg atggccttga
     1201 acatcgcgca ggccgagaag gatttgcgcg gggctgtcga gtacctcgcg ggccacgagg
     1261 cggtcgaggg cgagcgggtc ggcaccgtcg gcttctgcat gggcggcgtg ctttcgctat
     1321 acgccgcgtc gaagaacgac ggggtgggcg cgtgcgtcgt cttctacggg atacacccga
     1381 aggtcgagcc cgatctggag aacctgcgtg cgccggtgct gggcctctac gccgagcgcg
     1441 accagttcgt accgcccgac gcggcgcgcg ccctcgaagc gcgcctcaag gagctcggca
     1501 agcgtgccga gttccacata taccccggcg ccgaccacgc cttcttcaac gacacgcgac
     1561 ccgaggtcta cgacgcggag gcggcggccg acgcgtggcg gcgcacggtc gaattcttcc
     1621 gcgcgagcct ctgaggcggg cacaaggaca aaggggccgg ggccggttaa gacgcgaatc
     1681 ttaaccggcc ccggcccctt tgccttcaag cctccggctc ccgcttacgg caggacctcc
     1741 acgttgatga agaagcggaa cgagccgttc tgctgtatgc cgagcaggaa gcggacgtcc
     1801 ttcgtgttgt tcacgcccgg cgtgacgccg aggggcgtcg ccagcgtgac gtcgttatcc
     1861 gacatgctgg agttgaagcc gccgccattg ggctgcgagg gcggctgctc gagggtcgtg
     1921 ccgttgacga ggacgttgct cgtccccgag ccgcagggcg cgcggtcaac cgtcacgacc
     1981 acgtcggtcg aagtcctggg ccgcaggtcc gcgatccctg acggcgccgg gaaggtcgtg
     2041 atgtccacga tgcggaaccg gaggcgcgtg acgttcgcgc ccgtgttgtt gactatcgtg
     2101 cggcgcacgt cgagcgtgcc gaaggtcgag ttgttggccg gatcggaggt gaagtcgcgg
     2161 acgcggttcg gcggcgaggc cccggcgacg cacgggtcaa gcagcgagac cgcaaccgac
     2221 tcgttgcgcc gtatcgggga ggagaggttc tcggggcccg gcgcgccgag gcgctggccg
     2281 ccgccggccg acgtgccgtt cgtgtcaacg aagtagaagt cggacgcgtt gttgttggtg
     2341 tccttcggga ggccgcccgt cgggcacggc ccgaaggtcg ttatcgagcc gcccttgccg
     2401 caggtgtcgc gaacccacgc gtagtcaatc gagaatccga cgagcgtcgg cagccccgtc
     2461 ccctccttgt agagcgtgtt ggcctcggcc gtggtgccga cggcgtccat gcggttggcg
     2521 agcgccacct cggcggcgac gttagtggcg aagagagcga tgccgacgtt ctcgggtatg
     2581 ttcaaggtgt aggtggcgtc gcctatggcc gtggtgccgt tgccggcggg gtaggaggcg
     2641 agcgagtagc cgatcgagtt gatgcagagg aagtggccgc ggttagggat taccgtcccg
     2701 tccgggatgc tgcaacgcag catgccgtcg gaggcgaaga cgccgtagcc cgtgctcggc
     2761 gagctgggcg agttgaccgt gtgatccgcc ccggagttgt tgtaaatctc gatgaactcg
     2821 tcgttggcgc cgttcgggcc gcggtagcgg aactcgctga tgattagctg cgccgaggcg
     2881 ctcggcagtg cggccgcgcc cagaaggacg aggacggaca aaacgcccgc catcctgata
     2941 agagatgatt tcgtggttcg catgctgctc tcctgtggtg gtggttcctt ttaagccgtg
     3001 aaacgtttgc gcgctgtgac tcgaaaagcg cgcccgcagc cctccccgat cccaggcggc
     3061 cgcgcacggg cccttaccgc gagaagcgag gttctcccgg tgaggcttat aattttcaat
     3121 ttgctgggat agaacttacg gctcagaatc ttacccgcgc gggggcgaac gtgtcaaaaa
     3181 attttctcgc gcgccggttg cgtcagcggc cccgataact taaaacatta gcggagtatc
     3241 gggccgcgtg ccttcgggtt ccaccatgtt tgtcgagagc aagataaaga caaagctgct
     3301 gcgccagatg ggcgaggcta tcaaggactt ccacatgatc gaggacggcg accgcgtcat
     3361 ggtctgcctc tccggcggca aggacagcta cacgatgctc gacctgctgc tcgacgtgcg
     3421 gaggcgcgcg cccgtccgct tcgacctgct cgccgtcaac ctcgaccaga agcagcccgg
     3481 cttccccgcg gacgtgctgc cgaactacct gaaggagcgc ggcgtcccct tccgcatcgt
     3541 cgagcgcgac acctactcgg tcgtaaagcg gctcgtcccg gagggcaaga cctactgctc
     3601 cgtgtgcgcg cgcctgcgcc gcggcatcct ctaccagacg gccgtcgagg agggctgcac
     3661 caagatagcg ctcggccacc acgccgacga catcatctcg actttcctgc tgaacctcct
     3721 ctacgtcggc acgctcaaag cgatgccgcc cgtcttgcgc tccgacgacg gccgcaacac
     3781 ggtcatacgc ccgctcgcat actgccgcga gtcggacgtg gccgcctacg ccgccgagaa
     3841 ggggttcccc ataatcccct gtgacctgtg cggctcgcag acgggcctga agcgcgcgcg
     3901 cgtcaagagg ctcatcaccg agctcgagcg cgagataccg aacgtccgcg cctcgatgct
     3961 gacggctttg ggcaacgccg cgccctcgca cctgctagac cccgcgctct tcgacttcaa
     4021 gaacctgcgc gccgcatcgg gcgacgtaga ggcggagcta gacgccgcgc tcggccacac
     4081 ggacgcgcca gactcgcccg cgctcgtctc catcgcgtcg aactgagaag gcatgcccgc
     4141 cgctaagaag aaggccgcga agaaggcggc taagaagaaa gcagcagcga agaagcctgc
     4201 cgcgccgaaa aagacggcgg cgaggaaggc cgcgccggct aagaagcgcg ccgctaagcc
     4261 cgtcggcaag gcttcccctc ccgcgaagaa gaaggcgaag gcagacgtgc tcgacttcgg
     4321 cgacttcccc gccggctccg tcacgcgcca ctccaccgcg atctgcctcg cctgcgtctt
     4381 caacctcttc accaagcagc tcggcctcgc gccgcgcacg gcctacgccg aggtgcgacg
     4441 ctacgcgccg accgtcgagg agttgaccgc gcgcgagccg cagcgccctt tcttcaaaac
     4501 ttccgagtcc cgcgacgcgc gctgcccctt ctgcgacgcc ccgcgccgct ggcacgcgcg
     4561 cgtggacgcc caccgcatag agggcggcgc gcaggccgac tccgcccgcc gggccttagt
     4621 caggcggctg cccgcgcgcg acgagcagtt ccaggttcac gaaatcaaaa agaccgcgcg
     4681 cgcgcttttc ttcgagtggc tggacaggct ggggcagggg ctggacttcg aggacgaccg
     4741 ggcgtggatg acggcggccg cgctcgccta cctccagcgg cgcgagccca ggacggactg
     4801 ggccgcacag ttcgcgggcg tccgccaggt tcgccgctct agccggctcg aagatggctt
     4861 cgagcgcgac ggcgaccggc tctacctctc gcccgcgctc tacagcgacg tgctgctcgt
     4921 gcagtacctc gtcagccgct cgcaccgcca cggcggccgc accttcgagg ggcggctgac
     4981 gctcatagag ctggtgcggc gcctccgcca ccgcggccac ctcgacgcgc agggcatcac
     5041 cgagcgcgac cagttcgagg tgctcgaaca gctcgtcgag cacctcacgg gcggcgaccg
     5101 ccccgccaag ctccacttca ttgttgaccg ccgcgacctt ttagagaaag ccaaaaaggc
     5161 aggggccaga ggctagccgg gagtgcgact tcccagctag cctccggccc ccggtctctt
     5221 accgttccat cttgttgaag tgcaggcgga gcggggcggg cagggagatg tcgctcagca
     5281 cgaagacggc gtactcgggg tgctcggtct tcactagctg atagacgccg gccagcccgg
     5341 cggtgctgac ggtgccgtcg cgctccgaaa gataacgtcg cgcctgctca accgtcggct
     5401 tctcgtcgct cttgtagtcg cccacggcct cgacggcgta ggacttcaaa agcttcggcc
     5461 agtaggcggc gaagagcgtc tggctggcga acacgtcggc ccagacgggc tcgccgttgc
     5521 gcgcgactat cacgcccacc actccgggct gcaaaacctc cttctgaagc gccgcgatgt
     5581 actcttcgag ctggcccgcc accttcttgc tcgcatagac ctcctggtac gtgcccgtgg
     5641 tgttgtcggt gccgagcctc gcgttgttgt cgctgacttc cttccagact tccgtctgct
     5701 ccttcttgtc ctgcgccgcg ccccgcagct tcgggtgcgc gacggcgccg aggctgtaga
     5761 agttctccgc cttcctgggc tgcgcgctcg gcgcgatgac cggggcgccc gccgagccgg
     5821 ccgaagccct ctggctccag cgcccgtgct cgacgcagaa aacgtcgatc gagacgggga
     5881 cgctcaccgg cgggactatc ctgtcctcct gcacgatgcg atcctgcttg ccgccgacga
     5941 tgacctcgcc cgagagcagg aggagcttct tgccggagcg gttgacgagc gcgagctggt
     6001 tgaccgtcgc gccgtcgccc gccgtcatgt tcacctgctg cgcgcgcccg cgcacctgcc
     6061 ttctgaccat ctgccccgcg ccgcgctcag ttatctccac ggtgccgcgc ttgatgccct
     6121 cgtcgagcgt gacgtagtcg cccgccggag ccgtgttagg cccgcgcacg gggaagagcg
     6181 tcaggttctt gtagctgacg ggcggaagca cgctccaggc gtcgccgccc ctctgcctgt
     6241 ttcccttcgc cccggcccgc gtcgcccacc cgcctgaagg caacagcgcc aaacagactg
     6301 ccaacagcgc gaacgtcatc aacacccccg ccggaatccc cgatacccga acgtgattca
     6361 taaccgcctc ctcgtcaact tcgcttcgaa atatttgcga cggccccgcc gcctgttgtc
     6421 tgaggagtga acgcgcccgc cgccgccttc ttgcgcgcgg ccgcgaaatt tcggggcggg
     6481 ggtagcggtc aggaggttgg ggagacggtt taagttttgg cctcgcgggc gcggccgtcg
     6541 tcgcgcgggt cgggggcggg tggggcggcc tcggcgaatt gggcgggcgg gcggcggcgg
     6601 tatcggtgcg tgacggggcg gcgccggccg atgccgatgg cgttgcgcga gatgatgagc
     6661 gtgggcggga gctgccggcg cttgaactcg ttggcgggcg actccacgcg gttgagtatg
     6721 tcatagacga gcgcgcggtc gtggccctca gagactatct gctcgggcga atacttcttc
     6781 tcgaagtaga gccgcagcac ggggtctaaa acgtcgtagg gcgggagcga ttggtcgtcg
     6841 aactggtcgg gcgcgagttc ggccgagggc cgcttgttga tgatggccca gggtatgacc
     6901 tcgccgtcgc ggttgaggtg gcgcgcgagc gcatagactt ccgttttgag cacgtcgcct
     6961 atgacggcga ggccgccgtt cgtgtcgccg tagagcgtgc agtagccgag cgcaagctcc
     7021 gacttgttgc ccgtggagag cagcaggcgc ccctcggcgt tcgagacgct catgaggatg
     7081 ttgccgcgca ggcgcgactg aagattctcg gccgcgaggc tctcgccgct gcgcgtgggg
     7141 ttcgcgagcc ccagctcttt aaccagcacg ccataggccc cggagatggg gcgctcgacg
     7201 agaggcatcc ccgtgtttcg gccgaacgcg agcgagtcct ctatgctccc gcgcgaggag
     7261 aagggtgagg gcatcatcac tcccaacacg ttctcggggc cgagcgcctc gcaggcgagg
     7321 gccgccacca ccgccgagtc tatcccgccc gacatgccga gcaccgcgcg cgtgaagcgg
     7381 ttcttgcgcg cgtagtcgcg cacgcccagg acgagggcgc ggcgcacggt ctcgatgtcg
     7441 tcgccgggca ggcacgcctc gtcgcgcacg ccgcactcta ggtcaacggt gccgacgaac
     7501 tcctcgaagg gaggggcctg taggatggtc tcgccgcggc agtcggtgac gaggctcgcg
     7561 ccgtcgaaga tgatgccgtc gttgccgccg acgaggttca catagacgac ggggagcccg
     7621 tgcgccttcg agcggtgctg aaccatcgag cagcgctgcg ccatcttcgc cttgttgaag
     7681 ggcgaggcgt tgggagagac gacgacggtg gcgcccatct caatcacctc gtccgtcggg
     7741 tcgtgcgcgt agagccgctc gcgccagaag gtcttgtcgt tccagaagtc ctcgcagacg
     7801 acgacgccga gtttctcccc accgacttcg aacagccgcc gctccctcgc cgactcgaag
     7861 tagcgcgggt catcgaacac gtcgtactcg ggcagcaagg tcttgtcggc gtagccgagg
     7921 agacggccgt cgcgtatgac ggccgccgag ttgaagagct tgcgcccgtg ctcggcgccg
     7981 gtcggccgca cggtgccgac gacggccgtg atcccttcgg tcgccgggat tattttctcc
     8041 aacggcttaa gtgacgactc gacgatgtcg cggtctaaga accagtcgag cgacatgtag
     8101 ccctggacgg ccacctctgg gaagactacg aggtcggact tctccctcct cgcctgctcg
     8161 atggcgcgca ggattttctc cgtgttgccc tcgtagtcgc cgttcgtcgt gtctatctgc
     8221 ccgattgtga cgcgcatgcc ccgtagcata gcgaaaaagg cacgcgatga aaacacgggg
     8281 ccgcggcgcg cgccggctca ctaccgcacg agcttcagga tcatcggctc ggccttgtgc
     8341 gggccgaaag cttcagttcg gcctcgcccc cccgaggaat ttaatctcgc ccgagacttc
     8401 cttgatgatg ccgtagccgt tccgctccga gtcggccagc gccagcagta tgtggaagtc
     8461 cgagggcgta agcggcagca acttttccgg gtcgcgcaca ggcataggcc ctccgcgccc
     8521 tcgccaaact atatcgagcg gcgacacgct atatcggcgc ccgatacagg tcagggattt
     8581 tttcggggct acctgaagtc cttgatgagg acgaggtcgg tggtggcgtt gccgcgcgag
     8641 gcggcgagct gacggcctcc gggcgaccag gcgaagcggt atatgaagtc agacttccag
     8701 tcggtcagtt gccgcgggcg cccgcccgag agcggcaggc gccagacgtt ggcgacgccg
     8761 tcggtcgtca cgacgtagtc aatcgcctgc ccgtcgggcg accagtcgcg caggtcgagc
     8821 atctcgggcg gggcgtcgag ctcgcgcagc ggcgcgccgc cctccgacgg gaagaggtag
     8881 attttcacgg gcgcgtcgag caccggctcc tggtaggtcg agaagatggt cttgccgtcg
     8941 ggcgagaggc gcacgtagcc gaccttgtcg gagagaattt tctgcgggtc gccgccctcg
     9001 acgggcgcgc gccagatggc cgggcgcccc gactcgtcgc gcgagacgta gtagagccag
     9061 cgcgagtcgg gcgtgaactg aaggcccatc gtctggttgt tgtcaacgtt gcgtatgacc
     9121 tcgcgggcgt tgctgccgtc ggagttcatg cgccagacgc cccagcccgc gccgcggttc
     9181 gagcggaaga agatgtagcg gccgtcgggg gtgacggaag gcactatgtc gaggttgggg
     9241 tcgaaggtta gctggcgcgc gcctgtgccg tccgcgttca tcacccaaac gtcggcgttg
     9301 ccgctcgcgt ccgagtcata gacgacgcgg ccgtcgggca gccacgacag accggtcgag
     9361 ccgttgaagc cgacggaggt ggcctggcgg gcgcgcgagc tgtcgccgcc gggcgcgatg
     9421 aagatgttcg aggtgtcgcg cccctgcttc gcaaggagcg tgcgcgagtc tgaggtgagg
     9481 ctcacgccga cgtagttgtt caggtcgttc gttatcttct gcgcttcgcc ctcggggaag
     9541 ggcacgtacc agagctgtat gggcgtgctc gacagagacg cccggtccct cgccgccgtg
     9601 atcagccccg tcgtgtccga gagccacgcg agcgtaatca tctgccgcca gcgcgcgggc
     9661 gagaccgtgc gcaccgagcg gtctgccacg ttcacggcgt ccacgttcat gtagtagccc
     9721 tggtcgtcaa cgcggttgac ggtgtaggcg atggtgcggc cgtcgggcga ccacgcgggg
     9781 ctgtctatcc tctccggcag cttgtagctc gcgagcgtct gttcgttggc gccgtcggtg
     9841 tcaacgacga ctagagtgtc gtcgcgctcc ttcggcatgt ggcggcggaa ggcgacgcgc
     9901 ttgccgtcgg gcgagagggc cgggccgctg tcaacgtcga agactatctt ctgcggctcg
     9961 ccgccgagca gagggactct cagcatctcg cggaacgact gccccttgcg ccccacgacg
    10021 taatagacga acgcgccgtc gggcgagaag gcgggctgcc ccatgaagcc gatggcgttg
    10081 tcgggcggca ctaggtcgcg ctcgctcgtg gcgccgagct gccgcagcct cagactctgc
    10141 cggcccgtct cgaagacgac gcgcgcggcg tacttcccgt ccggcgagat ggcggccgag
    10201 acggtcgcgc cgctcgcagg caccttcgag agcttcatcg aggccagagg cgcgaacggc
    10261 gcgcccgcgc cgtgcctgcg cgcggcgtag cggtagatgg cgaaggcgcc cccgacgacc
    10321 acgacgagcg agccgagcac ggccagcagc ttgagcttcg tgccgcgccc gccgagcccg
    10381 gccgtcgtgc gcgcggccgc ggcctcgccc gtcggcgtgt tgaacagctc gcccgagcgg
    10441 acggtcgtgc gctggtggcc gcccgtctgt gtcgcgcccg cgcccgagag cgaggcggtg
    10501 cgcgcgattt gctcgccgct ctgcgcggga gcctccggcg tcagcgagtg ctcgaggctc
    10561 ccgcccgcct cgtagcggcg cttgaggcgc tgtagcttcg cgagcatctg cttggcggtc
    10621 tggaagcgag cctcggggtc tttggcgagt gcgtcggata tgacctcctg caacggctcg
    10681 ggcgcgtcgg ccaagtattg cgcgagcggc gcgggctcgt cgtcgagtat ggagacgacg
    10741 gtgtggctcg ccgacttgcc cttgaacggc aggtggcccg tcagcatctc gaagagcacg
    10801 acgcccaaac tccatatgtc tgtgcgcgcg tccacctcgc cgccgcccgc ctgctcgggc
    10861 gacatgtagg agacggttcc catcacggcg ccggcgtcgg tgacgacgag ggcgcgcgtg
    10921 gcggcctccg ggtcaactga ggagtcgggg cggcccgaca tcttcgccac gccgaagtcg
    10981 agcaccttca cgtagccgtc gcggcggatc attatgttgt cgggctttat gtcgcggtgg
    11041 acgatgcctt cggcgtgcgc ggcgaccagc gccgaggcga cctgcgcggc tatgtccagg
    11101 acttcgccga gccggagcgg cctgcgcttt acgtgctcgc gcaaggtcac gccgtcaact
    11161 agctctgtgg cgaagaagcg gcggccgtcc tcggcctgcc cgacgtcata aaccgtcacg
    11221 atgttcgggt ggtttaggcc cgaggcggcg agagcctcct gctcgaagcg cgccagccgc
    11281 ttcgggtcgg cggctatctc ggcggggagg aacttcaaag cggccgggcg gcgcagctca
    11341 gtgtcgaacg cgcgatagac ctcccccatc cctcccgcgc cgaggaggtc ttgaatctcg
    11401 tagcggccca cgcgtgcgcc cggctgaaaa ctcatggcgg cgactcacac cctcgtctca
    11461 aggcgcgccc attctaaacg aacatgccgc gcgaggcgga gcgaaaaacc gcgcgggcta
    11521 cttcggcatt cgcccgtcta acgttttgga aattcgtccc gcgcggtgga cttaagacgg
    11581 ccgccaagtt actactcgcg ctcttcgccg tggccgccgc cgccgggagt ctcgacgcgc
    11641 acgcgatcgc ccgcgcgaag ctcccacgag cccttcgagc cgacggcccg cgagcgcccg
    11701 ccgctgatta tcactgtgcg gccgggcagg cccgccccgc cgcccgcgag cccgtagggc
    11761 cgaagctcgc gccgatccga gagcagagac attcgcgcag gcactatcgt ctctatctcg
    11821 cgcacgactc cgtcgccgcc cctgcgcgcc ccgcgcccgc ccgacccttt gcgcagacgg
    11881 taggcgcgca cgcgcagagg gtacgcgtac tccagagcct cggccggcgt gttcaggctg
    11941 ttcgtcatgt gcgtgtgcac gcccgagacg ccgtcggccg agggccgtgc gcccatgccg
    12001 cccgcgaccg tctcgtagta agcaaactca cttccggtgc gcgggtcgaa gccgcccacg
    12061 gtcaggttgt tcatagtccc ctggctagcg gccgggactc tcgcgggcag cgcctcggct
    12121 agcgccttaa acagcacgtc aactatgcgt tgcgaagtct cgacgttccc tccggccacg
    12181 ggcgccgggt gcgcggcgtt gacgacggtg ccgcgcggcg ctatcaactc aataggctcg
    12241 acgagcccgg cgctggccgg cacgtcgtcc gctcggacga ggcagcggaa gacgtatgcg
    12301 acg
//
LOCUS       DASPKR010000547         8476 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1116565, whole genome shotgun sequence.
ACCESSION   DASPKR010000547 DASPKR010000000
VERSION     DASPKR010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8476)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8476
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1116565"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1922)
                     /locus_tag="VD968_14775"
     CDS             complement(<1..1922)
                     /locus_tag="VD968_14775"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE15704.1"
                     /translation="MNSISKVLLRSFALALALSFATDASAQVTTADITGRVLDQNGAA
                     VVNANVTARNTGTGQERSTQTGEDGNYTITQLQPGTYDITAEAPSFSRALAKGLELNV
                     GAKLTLNFDLRPGQITETVEVSSAALTIETTKSELGGVVTPIEVENLPLLNRTFASLS
                     VIMPEARPVGNFDPTKTRVGNVAFNGGDGRQVDVNVDGGDNKDNVVGSLLQNFPYESI
                     QEFQVLQHRWTAEQGRAVGGVVNVITKSGTNEFHGSLFSNFRDEKLRALDFFEKQREV
                     ADPNFRKPSFSRQEIGGSIGGPIKQDKLFFFFALERFRERQNVAVRQDAFTQLGFVPG
                     AEVVSEIPTPYNDTLLTGKVDHRLTSNQTMFYRFAFQKNDSPNDQVPNPATTDLTGGN
                     LTNNKLYSFVTNHTYTISPTKLNQFVFHFQDFKNEILGVTTNPRLVFPGGIEIGPNVN
                     TPQATLERKYQFRDDFSMQAGNHGLKFGTNYIHTKLDGYFFFGSSGYTVTFFDPPSTI
                     AALPQGFATPGVVQSISFATGEASHAQNLHQLAFYVQDDWKVRPNLTFNLGLRWDANI
                     GNLPDQTNNRTFALLRQLNHPLARALTADPSKLSRSTPSWKEFQPRLGFAWDPTGTGR
                     TVVRGGYGIFFDQLFQ"
     gene            complement(2179..2943)
                     /locus_tag="VD968_14780"
     CDS             complement(2179..2943)
                     /locus_tag="VD968_14780"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYE15705.1"
                     /translation="MENSSPVIYAVEGPVALITLNRPGKRNALNDALVAALKEALRDA
                     DARPDVRVVVITGAGADFCSGADLASLQKISESSITENLEDAQSLAELFSLIRRVRVP
                     VVAAVRGRALAGGCGLATACDIVLAAESARFGYPEVKIGFVPAMVMAILRRNVSEKRA
                     FELVTRGAELTASEAERAGLVNHVFPDDAFEAEVEKYVSGFERVSRTAVTLTKRLLYH
                     MDGMAFDAALQSGADLNAVARMTEDCRRGIARFLKK"
     gene            complement(3004..3900)
                     /locus_tag="VD968_14785"
     CDS             complement(3004..3900)
                     /locus_tag="VD968_14785"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYE15706.1"
                     /translation="MGDALSSLDQSVRHGYAQVGDVRLHYAERGGGDRLVILLHGFPE
                     CWYSWRHQLAALGERFRVVAPDMRGYNLSDKPSSVEDYRVDRLVDDVTGLIRHFGARE
                     AAVVGHDWGAAVAWAAAQLYPDYVSKVAALQVPPPAVWARNMTMRQLLRSWYMFFFQL
                     PSLPEWWVSRDDYAALDRMMRSTARPGTFKPEDVAVFKSALREPGALTAGINYYRANL
                     RALLRRAFERREFPAAEKIRVPALFIYGERDFAIVPETVRGVADYVNAPYTELRLARS
                     GHWAQQEFHAEVSAALMSFLEG"
     gene            complement(3913..4260)
                     /locus_tag="VD968_14790"
     CDS             complement(3913..4260)
                     /locus_tag="VD968_14790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15707.1"
                     /translation="MRIQLVKLAHARSGDKGDTANVGLMALRDDLYPLLAREVTAERV
                     KEHFRGICKGGVERFELPNLSALNFLLHESLGGGGTLSLMTDAQGKTFSTALLRMEIE
                     VPDEEARRLGLAE"
     gene            complement(4277..4876)
                     /locus_tag="VD968_14795"
     CDS             complement(4277..4876)
                     /locus_tag="VD968_14795"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HYE15708.1"
                     /translation="MRDGEETRAGAAAEPPPRPWRRTNSEQLADCRVFRVRRDMSADP
                     RDGREHDFYVIEAPDWVNVIPVTAGGDVVLVELYRHGTGEVSLEIPGGMVDEGEGARE
                     TAARELLEETGYAAPELIDLGSTRPNPAIQGNRLHTFLARGAERRQRPADEGTEQTVV
                     RLVPLERITPLIREGRINHSLVVAAFHLLSLYEKLPAGR"
     gene            complement(4873..6249)
                     /locus_tag="VD968_14800"
     CDS             complement(4873..6249)
                     /locus_tag="VD968_14800"
                     /inference="COORDINATES: protein motif:HMM:NF018938.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyclic terpene utilization AtuA family protein"
                     /protein_id="HYE15709.1"
                     /translation="MGKHKETIRVACGQGFWGDMLDAPARQVNEGPIDYLMLDYLAEV
                     TMSIMQKQRSRDPSAGYARDFVPLMREILPRCVERGIRVTANAGGVNPEGCAGAVREV
                     ARELGLAGRLRLGTVTGDDIMGRLDELIERGVGLRNMETGEPLSAVRDRVQSANVYLG
                     AWPIVEALGRGADVVITGRATDTGLTLAPLIHEFGWKGTDWDLLAAGTVAGHIIECGA
                     QCSGGNCQYEWQTIPDLANVGFPIVEASPDGTFVVTKHEGTGGRVSVPTIKEQLLYEM
                     GDPTEYITPDCVADFTTIRLEDAGRDRVRVSGIKGRPATEFYKVSVSYSAGFKAVGTL
                     VYSWPDAYAKARAADQILRARLDRLGLKFDVVLTEFVGAGATHGPLAGEPPRDAPEVQ
                     LRVGVRGEDRKSVERFTKEIAPLILTGPPGVTGFAGGRPKVEEIVAYWPALIPKTEIE
                     PRVEVTEV"
     gene            complement(6399..7010)
                     /locus_tag="VD968_14805"
     CDS             complement(6399..7010)
                     /locus_tag="VD968_14805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15710.1"
                     /translation="MSKSTRIRFLIVMPVLAFVAFTLLVGDVGALAQNANSSEQDANV
                     QPMPEASPTPPRRRRGRGRRRAATRAAPSDANLSADAQANVSMDTDTGTRSPGEQTDL
                     SGNWTGRVRMTGGHEMSGEATLSITGNSFTLSGEGMTHNGRVYAVTTRGYTGAAFYFS
                     DITDPATNTPVVASTRVRRSGTRITITPVPFTRTRMNFTGRAQ"
     gene            complement(7227..>8476)
                     /locus_tag="VD968_14810"
     CDS             complement(7227..>8476)
                     /locus_tag="VD968_14810"
                     /inference="COORDINATES: protein motif:HMM:NF013225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HYE15711.1"
                     /translation="PIIYLVDSAGVNLPYQGGVFPGQYGAARIFYYNSIMRRYLHVPQ
                     IAAVMGPCVAGGAYLPALSDIIVMVEGTSFMGLGGANLVKGATGQTIDNETLGGARTH
                     TEISGVAHYREESDESCISKIREIVSELPAPERSPVSVVEPREAARPADDLYTLLPED
                     HRHPYDSREVLGCILDEGRLDEFQAGYAREMITGHARVRGIQVGVIANSRGLVREKGK
                     PPKFGGIIYTESAEKVAYFIETCARHRTPLLFVQDVSGFMVGAEAEHSGIIRAGARFV
                     EAMATAAVPKIVLTVNHASGAGYYAMAGQGFDPDFIFSWPTGRMGVMEGDSAVQAIYG
                     TQLDKLRREGAEPDERLRAEMERVRADYEHQLDARYAAARGYVDACIAPEQTRDALEL
                     ALRVCLNYPGPHLGQFVLPPSLV"
BASE COUNT         1257 a         2721 c         3015 g         1483 t
ORIGIN      
        1 ttctggaaga gctggtcgaa gaagatgccg tagccgccgc ggacgaccgt gcggcccgtc
       61 cccgtcgggt cccaggcgaa ccctaggcgc ggctggaact ccttccagct cggcgtcgag
      121 cggctgagct tcgaggggtc ggccgtgagc gcgcgggcga gcgggtggtt gagctggcgc
      181 aggagggcga aggtgcggtt gttggtctgg tcgggcaggt tcccgatgtt ggcgtcccag
      241 cgcaggccga ggttgaaggt gaggttgggc ctgaccttcc agtcgtcctg cacgtagaag
      301 gcgagctggt gcagattctg ggcgtggctc gcctcgccgg tggcgaacga gatggactgc
      361 acgacgccgg gcgtcgcgaa cccttgcggc agcgccgcga tggtcgaggg cgggtcgaag
      421 aaggtgacgg tgtagccgct ggagccgaag aagaagtagc cgtcgagctt ggtgtggatg
      481 tagttggtgc cgaacttgag gccgtggttg ccggcctgca tcgagaagtc gtcgcggaac
      541 tggtacttgc gctccagcgt cgcctgcggg gtgttgacgt tcggcccgat ctcgatgccg
      601 cccgggaaga cgaggcgcgg gttggtcgtc acgcccaaga tttcgttctt gaagtcctgg
      661 aagtggaaga cgaactggtt gagcttcgtc gggctgatgg tgtaggtgtg gttggtgacg
      721 aagctgtaga gcttgttgtt ggtcaggttg ccgcccgtca ggtcggtggt cgcggggttc
      781 ggcacctggt cgttgggcga gtcgttcttc tggaaggcga agcggtagaa catcgtctgg
      841 ttcgaggtca ggcggtggtc caccttcccc gtgagaagcg tgtcgttgta gggggtgggg
      901 atttcggaga ccacttcggc cccggggacg aagccgagct gcgtgaaggc gtcctgccgg
      961 acggccacgt tctgccgctc ccggaagcgc tccagcgcga agaagaagaa gagcttgtcc
     1021 tgcttgatcg gcccgccgat ggaaccgcct atctcctggc ggctgaacga gggcttgcgg
     1081 aagttcgggt cggcgacctc gcgctgcttc tcgaagaaat cgagcgcgcg cagcttctcg
     1141 tcgcggaagt tgctgaacag cgagccgtgg aactcattgg tgcccgactt ggtgatgacg
     1201 ttcaccaccc cgccgacggc gcgcccctgc tcggcggtcc agcggtgctg caggacctgg
     1261 aactcctgta tcgactcgta ggggaagttt tgcaggaggc tcccgacgac gttgtccttg
     1321 ttgtcgccgc cgtcgacgtt gacgtcgacc tgcctgccgt ccccgccgtt gaaggcgacg
     1381 ttgccgacgc gcgtcttggt cgggtcgaag ttaccgacgg ggcgcgcctc cggcatgatg
     1441 accgagaggc tggcgaacgt gcggtttagc agcggaaggt tctcgacctc gatgggggtg
     1501 acgacgccgc ccagctcgga cttcgtcgtc tctatcgtca gcgcggctga cgacacctcg
     1561 accgtctcgg ttatctgccc gggcctgagg tcgaagttca gcgtcagctt cgcgccgacg
     1621 ttgagctcca gccccttggc gagcgccctg ctgaagctcg gggcctcggc cgttatgtcg
     1681 taagtgcccg gctgcaactg cgtaatggtg taattgccgt cctcgcccgt ctgcgtggaa
     1741 cgctcctgtc ccgtgcccgt gttgcgcgcc gttacgttgg cgttcacgac cgccgcgccg
     1801 ttctggtcga gcacgcggcc cgtgatgtcg gcggtcgtga cctgcgcgga cgcatcggtt
     1861 gcgaaggaga gggcgagggc gagggcaaag cttctgagta gaactttcga gatagaattc
     1921 acggctgacg cctccttttg agaatcccgt cgcgagaaga tcgggagcgt gtggcagctt
     1981 aaaaccctgg ctcggtgtcg ggctccggct aggaccggtc tgtagcggtt tgaagtcggc
     2041 aaatagtatt ccaccggccg gcggggccgt caatgcataa ttttcccgcc aaacggcgcg
     2101 cgcccccgcc cgcgcgcagg cccggcttat ccgaattctt aaacgtcttg gattttatgg
     2161 atgaggggga gggggcggct acttcttgag gaagcgggcg atgccgcgcc ggcagtcttc
     2221 ggtcatgcgg gcgacggcgt tgaggtcggc gccggattgg agcgcggcgt cgaacgccat
     2281 gccgtccatg tggtagagca ggcgcttcgt gagcgtgacg gcggtgcggc tcacgcgctc
     2341 gaagccggag acgtactttt cgacctcggc ctcgaacgcg tcgtcgggga agacgtggtt
     2401 aacgaggccg gcgcgctcgg cctccgaggc ggtcagctcc gcgccgcgcg tcaccagctc
     2461 gaaggcgcgc ttctccgaga cgttgcggcg cagtatcgcc atcaccatcg cggggacgaa
     2521 gcctatcttg acttccgggt agccgaagcg cgccgactcg gccgcgagca cgatgtcgca
     2581 ggccgtggcg agcccgcacc cgcccgcgag cgcgcgcccg cgcacggcag ccacgaccgg
     2641 caccctcacg cggcgtatga gcgagaaaag ctccgcgagc gactgcgcgt cttctaggtt
     2701 ctcggttatc gagctttcgg aaatcttctg aagcgaggcg aggtctgcgc cggagcagaa
     2761 gtcggcgccc gcgcccgtga tgacgactac gcggacatcg gggcgcgcgt cggcgtcgcg
     2821 aagggcttcc ttcagggcgg cgacgagggc gtcgttgagc gcgttgcgct tccccggccg
     2881 gttgagcgta atcagcgcta ccgggccctc gactgcgtag atgacggggc tgctgttctc
     2941 catatgacag gggccggggc tagaggctag ttaagagcct tcacaggccc ccagcctctg
     3001 ctttcaccct tccagaaaac tcattagcgc ggcgctcact tccgcgtgga actcctgttg
     3061 ggcccagtgg ccgctccggg caaggcggag ttccgtgtag ggcgcgttga cgtagtcggc
     3121 cacgcccctg acggtctcgg ggacgatggc gaagtcgcgc tcgccgtaga tgaagagggc
     3181 ggggacgcga atcttctcgg ccgcggggaa ctccctacgc tcgaaggctc ggcgcaggag
     3241 cgcgcgcagg ttcgcccggt agtagtttat gccggccgtg agcgcgcccg gctcgcgaag
     3301 cgccgacttg aagacggcaa cgtcttcggg cttgaaggtg ccggggcgag ccgtcgagcg
     3361 catcatgcgg tcgagcgcgg cgtagtcgtc gcggctcacc caccactcgg gcagcgacgg
     3421 gagctggaag aagaacatgt accagctccg caggagttgc cgcatcgtca tgttccgagc
     3481 ccagacggcg ggcggcggca cttgcagcgc ggcgaccttc gagacgtagt cggggtaaag
     3541 ttgcgccgcc gcccaggcga cggccgcgcc ccagtcgtgg ccgacgacgg cggcctcccg
     3601 cgcgccgaag tggcgtataa ggccggtcac gtcgtcaacc aaccgatcca cccggtaatc
     3661 ctcgacgctc gacggcttgt cgctcaggtt gtagccgcgc atgtcggggg cgactacgcg
     3721 gaagcgctcg ccgagggcgg cgagctggtg acgccatgag taccagcact cggggaagcc
     3781 gtgcaggagt atgacgaggc ggtcgccccc gccgcgctcg gcgtagtgca gacgcacgtc
     3841 gccgacctgc gcgtagccgt ggcgcaccga ctggtcgaga ctgctgagag cgtcgcccat
     3901 acccaatcag atttactcgg cgaggccgag gcggcgggcc tcttcgtccg ggacttcaat
     3961 ctccattcgg agaagcgccg tcgagaaggt cttgccctgc gcgtccgtca tgagcgagag
     4021 cgtgccgccg ccgccgagcg actcgtgcag taggaagttg agggccgaga ggttcggaag
     4081 ctcgaagcgc tcgaccccgc ccttgcagat gccgcggaag tgctccttga cgcgctcggc
     4141 cgtcacctcg cgcgcgagca gcgggtagag gtcgtcgcgg agcgccatca gccccacgtt
     4201 cgccgtgtcg cccttgtcgc ccgagcgcgc gtgcgcgagt ttaacgagtt ggattcgcat
     4261 aacggtgaac agtcagtcat cggcccgcgg gtagcttctc ataaagcgat agcaggtgga
     4321 aggccgcgac gacgagcgag tggttgatgc ggccctcgcg aatgagcggg gtgattcgct
     4381 caagcgggac gaggcggacg accgtctgct ccgtgccttc gtccgcgggc cgttgccgtc
     4441 gctcggcgcc gcgcgcgagg aaggtgtgca gccggttgcc ctgaatcgcg gggttggggc
     4501 gcgtgctgcc cagatctatc agctccgggg cggcgtagcc cgtctcttcg agaagctcgc
     4561 gggcggccgt ctcgcgcgcg ccctcgccct cgtcaaccat cccgcccggt atctcgagcg
     4621 agacctcgcc cgtgccgtgg cggtaaagct ctacgaggac gacatcgccg cccgccgtga
     4681 cggggatgac gttcacccag tcgggcgcct cgatgacgta gaagtcgtgc tcgcggccgt
     4741 cgcgcgggtc ggcgctcatg tcgcgcctga cgcgaaacac gcggcagtcg gcgagctgct
     4801 ccgagttcgt gcggcgccat ggccggggcg gcggctcggc tgctgcgccc gcgcgcgtct
     4861 cttccccgtc cctcaaacct ccgtgacctc cacgcgcggc tctatctccg tcttcggtat
     4921 gagcgcgggc cagtaggcga cgatctcttc gaccttcggc cgcccgcccg cgaagcccgt
     4981 cacaccgggc ggccctgtga ggatgagcgg cgctatctcc ttggtgaagc gctcgacgga
     5041 tttgcggtct tcgccgcgca cgccgacgcg cagttggact tcgggcgcgt cccgcggggg
     5101 ctcgccggcg agcggcccgt gcgtggcgcc ggcgccgacg aactcggtca gcacgacatc
     5161 gaacttgagg ccgagccggt cgaggcgcgc gcgaaggatt tggtcggccg cgcgcgcctt
     5221 cgcgtaggcg tccggccacg aatagacgag cgtgccgacg gccttgaagc ccgccgagta
     5281 gctcacggag accttgtaga actctgtcgc ggggcggccc tttatgccgc tgacgcgcac
     5341 gcggtcgcgc ccggcgtctt cgagtcgtat ggtcgtaaag tccgcgacgc agtcgggcgt
     5401 gatgtactca gtggggtcgc ccatctcgta gagcagttgc tccttgatcg tggggacgga
     5461 gacgcgcccg cccgtcccct cgtgcttggt gacgacgaac gtgccgtccg ggctggcttc
     5521 gacgatgggg aagccgacgt tggcgaggtc ggggatggtc tgccactcgt actggcagtt
     5581 gccgccagag cactgcgcgc cgcactcgat gatgtgaccg gcgacggtgc ctgcggcgag
     5641 taagtcccaa tcagtcccct tccagccgaa ctcgtgtatg agcggcgcga gcgtcaatcc
     5701 ggtgtcggtg gcccggcccg ttatgaccac gtcggcgccg cgccccagag cctcgacaat
     5761 gggccacgcg ccgagataga cgttcgcgct ctgaacccta tcgcgcaccg cggagagcgg
     5821 ctcgccggtc tccatgttgc gaagcccgac gccgcgctct atcagctcgt cgaggcgccc
     5881 catgatgtcg tcgcccgtca cggtgccgag gcggagccgg ccggccaggc ccagctcgcg
     5941 cgcgacctcg cgcacggccc cggcgcagcc ctcggggttc acgccgcccg cgttcgctgt
     6001 cactcgaata ccgcgctcga cgcagcgggg cagaatctcg cgcatgagcg gaacgaagtc
     6061 gcgggcgtag ccggccgagg ggtcgcgcga gcgctgcttc tgcatgatag acatcgtgac
     6121 ctcggcgagg tagtcgagca tcaagtagtc tatcggcccc tcgttcacct gccgcgcggg
     6181 cgcgtcgagc atgtcgcccc agaagccctg gccgcaggcg acgcggatcg tctctttgtg
     6241 cttgcccata aaagtttcgg ttgattggct ctgaaggcag tttatcggat acgcggcggc
     6301 gagacaaagc gggcggcgca ggaggctcgc gcgagcctcc tgcgccgccc gactttcgcc
     6361 cgtggcgccc gtgtgtgttt acgaaccggc cgccgatgct actgcgcgcg ccccgtgaag
     6421 ttcatgcgcg tgcgcgtgaa cggcacgggc gttatggtga tgcgggtgcc gctgcgtcgc
     6481 acgcgcgtcg aggcgacgac gggcgtgttg gtcgccgggt cggttatgtc cgagaagtag
     6541 aaggccgcgc ccgtgtagcc gcgcgtcgtg acggcgtaga cgcggccgtt gtgcgtcatg
     6601 ccctcgcccg atagggtgaa cgagttgccg gtgatgctga gcgtcgcctc ccccgacatc
     6661 tcgtggccgc ccgtcatcct tacgcggccc gtccagttgc cgctcaggtc ggtctgctcg
     6721 ccgggcgagc gcgtgccggt gtccgtgtcc atggagacgt tggcctgcgc gtcggcgctc
     6781 aagttggcgt cggacggggc cgcccgagtc gcagcgcgcc gccggccgcg ccctcggcgc
     6841 cggcgggggg gcgtcgggct cgcctccggc atcggctgca cgttcgcatc ctgctcgctg
     6901 ctgttcgcgt tctgcgccag cgcgcccacg tccccgacga ggagggtgaa ggcgacgaag
     6961 gcgaggacgg gcatgacgat taagaacctg attcgggtgc ttttgctcac ggatgtttct
     7021 cctcctgttt aagactgtgc gcgccgaaag gcttaaggcg ggcgcgcccc tctgaagaat
     7081 ctttgcggcg ctgcgcgcgg gtcgcgcccg agccggtcgg cgggggaaac ctctgagaac
     7141 gcttgcgggt tgcgccctag tgtcgcacaa ccggggcgcc cgttgcacca acttttttcg
     7201 gtcgccgggc tcgcgagccc gccccgtcag actagcgacg gggggaggac gaactggccg
     7261 aggtgcggcc ccggatagtt gaggcagact ctcagggcga gctcgagcgc gtcgcgcgtc
     7321 tgctcggggg cgatacaggc gtccacgtag ccgcgcgcgg ctgcgtagcg cgcgtcgagc
     7381 tggtgctcgt agtcggcgcg cacgcgctcc atctcggccc ggaggcgctc gtccggctcc
     7441 gccccctcgc gcctgagctt gtcgagctga gtgccgtaga tggcctgcac ggcggagtcg
     7501 ccctccatca cccccatcct gcccgtcggc caactgaaga tgaagtccgg gtcaaagccc
     7561 tgccccgcca tggcgtagta gcccgcgccc gaggcgtggt tgactgtaag gactatcttc
     7621 ggcacggcgg ccgtcgccat cgcctcgacg aagcgcgcgc cggctcggat tatccccgag
     7681 tgctccgcct ccgccccgac catgaagccc gacacgtcct gcacgaagag cagaggcgtc
     7741 cggtggcgcg cgcacgtctc gatgaagtag gcgaccttct cggccgactc ggtgtagatg
     7801 atgccgccga acttcggcgg cttccccttc tcgcgcacca gcccgcggct gttggcgatg
     7861 acgccgacct gtatgccgcg cacgcgcgcg tggcccgtta tcatctcgcg cgcgtagcct
     7921 gcctggaact catcgaggcg gccttcgtcg agtatgcagc ccaggacttc gcgcgagtcg
     7981 taggggtggc gatggtcttc ggggaggagc gtgtagaggt cgtcggccgg gcgcgcggcc
     8041 tctctgggct cgactacgga gacgggcgag cgctcgggcg ccggaagctc cgagacgatc
     8101 tcccgaatct tcgagatgca agactcgtcc gactcctcgc ggtagtgggc gacgccggaa
     8161 atctctgtgt gcgtgcgcgc gccgcccagg gtctcgttgt ctatagtctg ccccgttgcg
     8221 cccttgacga ggttcgcgcc gccgaggccc atgaacgaag tgccctcgac catcacgatg
     8281 atgtccgaga gtgcgggcag gtacgcgccg cccgcgacgc acggccccat caccgccgcg
     8341 atctgcggga cgtgcaggta acggcgcatg atcgagttgt aatagaagat gcgcgccgcg
     8401 ccgtactgcc cggggaagac gccgccctgg taggggaggt tgacgccggc cgagtccacc
     8461 aggtagatga tcggca
//
LOCUS       DASPKR010000548         3185 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1506323, whole genome shotgun sequence.
ACCESSION   DASPKR010000548 DASPKR010000000
VERSION     DASPKR010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3185)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3185
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1506323"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(35..508)
                     /locus_tag="VD968_14815"
     CDS             complement(35..508)
                     /locus_tag="VD968_14815"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HYE15712.1"
                     /translation="MTKEAAVAASGVEAPDFTLKDSHGRDWRLSGKRGRVVVLLFYPR
                     DETPVCTRQMCSVRDHWSEYAATGAEVVGVSTDSPESHRKFAEHHKLPFTLLSDPGGR
                     VARQYGAASWLPGRAARAVVIIGADGRVRHLKVQPVSLFRPKDEEVLAAIRAASV"
     gene            complement(560..997)
                     /locus_tag="VD968_14820"
     CDS             complement(560..997)
                     /locus_tag="VD968_14820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15713.1"
                     /translation="MGLMTLCRVLHIAATCTSLGGLFYARAVLWPTLGRLPAGEREEF
                     LAAAVRRFAYIKWAGVAVVAVTGVVQWLAVYPSVLDKKLYLLYFALKMVGAVGLFGIT
                     FLLALPAERLEGMRRRRAFWSGLNVLCGLTILVGAALMRTVAR"
     gene            complement(1003..1812)
                     /locus_tag="VD968_14825"
     CDS             complement(1003..1812)
                     /locus_tag="VD968_14825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15714.1"
                     /translation="MSVGAFKRRSSWPSSFLTGLIGWNGFMVIAGLVVQLVVGDAPPA
                     GLLFLTGVVAAVAQVLVLRLGFFHFGLDRGLMRGLVWGGLTGGALGALAAYLAPPLRE
                     RPVVWALDGVYIGVAVGLFLSYFYRDDRRIEAEAAAAGRPVDYGRDAHWLEPFFFGAA
                     AYLLAFVPRSLDLAATALVVGAMSGVFAAGVSHFFLNRAPGSALLPVALGALAGVVQG
                     AASGLLFRGFAEELPFSTLLHGAAAGVLTYLVTCARGLALARREGKQLPAG"
     gene            complement(1986..2942)
                     /locus_tag="VD968_14830"
     CDS             complement(1986..2942)
                     /locus_tag="VD968_14830"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HYE15715.1"
                     /translation="MQALERMLLSCNVCPLDCGNNRLEGELARCYSGRLPVVSSYTPH
                     FGEEPALTGTKGAGNIFFGNCNLRCVYCQNYQISQAHKEQVKNEVTHERLAEMMIELQ
                     ARGCHNINFVSPTHFAPQLARAVLIAAGRGLKLPIVYNTNAYDSVEALRLLEGVVDVY
                     LPDLKYADSADGYAYSKVPNYTERAREALAEMYRQTGDSLVFDGEGILRRGLVVRLLV
                     LPNDIAGVRESLEWVREALSPRVAVSLMAQYYATNKAATDPRYTLLSRRITEGEWLRA
                     SSLLDELGIQEGWVQEYDGASHYYRPDFTDPDTPFKDVRDFQ"
BASE COUNT          575 a         1071 c         1050 g          489 t
ORIGIN      
        1 cgccggtttg tttgtctgtt cggttcggcc tgcattatac actcgccgcg cgtatggcgg
       61 cgagcacctc ttcgtccttc gggcggaaga gcgagacggg ctgcaccttc aggtgacgga
      121 cgcgcccgtc cgcgccgatg atgacgacgg cgcgcgccgc gcggcccggt agccaggagg
      181 ccgcgccgta ctgacgcgcg actcggccgc cggggtcgga aagcaaagtg aagggaagtt
      241 tgtgatgctc ggcgaacttg cggtgcgact ccggcgagtc ggtcgagacg ccaacgacct
      301 ccgcccccgt cgcggcgtac tccgaccagt ggtcgcgcac cgagcacatc tggcgcgtgc
      361 agaccggcgt ctcgtcgcgc gggtagaata ggaggacgac gacgcgcccc ctcttcccgg
      421 agagccgcca gtcgcgcccg tgcgaatctt tcagagtgaa gtcgggcgcc tctacgcccg
      481 acgcggcgac cgccgcctct ttcgtcaaac tctttccccc gccgccttga agtacgaaga
      541 gcctcgaacg gtcgggcgct cacctcgcca ccgtcctcat cagcgccgcg ccgactagaa
      601 tcgtcagccc gcagaggacg tttaagcccg accagaacgc gcgccgacgg cgcatgcctt
      661 cgaggcgctc ggccggcagg gccagcagga aagttatgcc gaagaggccc acggccccga
      721 ccattttgag cgcaaagtac aggagataga gtttcttatc aagcacggaa ggataaacgg
      781 cgagccactg cactaccccc gtgacggcga ccacggcgac tcccgcccac ttgatgtagg
      841 cgaagcgtcg cacggcagcg gcgaggaact cctcgcgctc gcccgcgggc agccgcccga
      901 gcgtcggcca aagaaccgcg cgcgcgtaga agaggccgcc cagcgaagtg cacgtcgcgg
      961 cgatgtggag cacgcggcag agagtcatca gccccatcgt cgtcacccgg ccggcagttg
     1021 tttgccctcg cgccgcgcga gcgcgagccc ccgcgcacag gtcacgaggt aggtgagcac
     1081 gcccgcggcc gccccgtgca gcagcgtcga gaagggaagc tcttcggcga agccccggaa
     1141 gaggaggccg ctcgcggccc cctgcacgac gcccgcgagc gcgccgagcg cgacgggcag
     1201 cagcgccgag ccgggcgcgc ggttcaggaa gaagtggctg acgccggccg cgaacacccc
     1261 gctcatcgcg ccgacgacga gggccgtcgc cgccaggtcg agcgagcggg ggacgaaggc
     1321 gagcaggtag gcggcggcgc cgaagaagaa gggctctagc cagtgcgcgt cgcgcccgta
     1381 gtcaacgggg cggcccgcgg ctgccgcctc ggcctcgatg cgcctgtcgt ccctgtagaa
     1441 gtatgagagg aacagcccga cggcgacgcc aatatagacc ccgtcgagcg cccagaccac
     1501 gggccgctcg cgcaggggcg gggcgaggta cgcggcgagc gccccgaggg ctccgcccgt
     1561 caggccgccc cagacgagcc cgcgcatgag ccctcggtct agcccgaagt ggaagaagcc
     1621 gagccgcagc acgagcacct gcgccacggc cgcaaccacc cccgtcaaaa acagcagccc
     1681 tgcgggcggc gcgtcgccga cgacgagctg gacgacgagg cccgctatca ccatgaagcc
     1741 gttccagcct atcaggcccg tcaggaaact cgacggccac gagctgcgcc gcttgaaagc
     1801 gccaacggac atgacggcac gtgcctcctt cgcgctgaag agttcggaga aagcctccgc
     1861 ccgtgcgtca cggcaaacgg cgttcccgtc ctgaaagcct gggaagtcgc ggccgcgcgg
     1921 tgagatttac agttgcgagt tgccaaacgc ggggtcggcc cttcgcaaaa tcagaaacgc
     1981 ggtgcttact gaaaatccct tacgtccttg aagggcgtgt cggggtctgt gaagtcgggg
     2041 cggtagtagt gtgaggcgcc gtcgtactcc tgcacccagc cctcctgtat ccccagctcg
     2101 tcgaggagcg aagaggcgcg cagccactcg ccctccgtga tgcgccttga gagcagcgtg
     2161 tagcgcgggt cggtcgccgc cttgttagtc gcgtagtact gcgccatgag ggagacggcg
     2221 acgcgcgggc tcaaagcttc gcgcacccac tccagcgact cgcgcacgcc ggcgatgtcg
     2281 ttcggcagca cgagcaggcg gacgacgagc ccgcggcgca agatgccttc gccgtcgaag
     2341 acgagcgagt cgcccgtctg cctgtacatc tccgcgagcg cctcgcgcgc acgctccgtg
     2401 tagttcggca ccttcgagta ggcgtagccg tcggccgagt ctgcgtactt caaatccggc
     2461 aggtacacgt caacgacgcc ttcgagcagg cgcagggctt ccacggagtc gtaggcgttc
     2521 gtgttataga caatggggag tttgaggccc cgcccggccg cgatgaggac tgcgcgcgcc
     2581 aactgcggcg cgaagtgcgt ggggctgacg aagttgatgt tatgacagcc gcgcgcctga
     2641 agctcgatca tcatctccgc gaggcgctcg tgcgtgacct cgtttttgac ctgctccttg
     2701 tgcgcctgcg aaatctggta gttctggcaa tagacgcagc gcaggttgca gttgccgaag
     2761 aagatgttgc cggccccttt agtccccgta agcgccggct cctcgccgaa gtgaggcgtg
     2821 taggaggaga cgacgggcag ccgccccgag tagcagcgcg ccagctcgcc ctcaagcctg
     2881 ttgttgccgc agtcgagcgg gcagacgttg cagctaagca gcatcctttc gagggcctgc
     2941 accctctcct ctagctcccc ggatttgtat aaagctaagt aattcggtcg gtgctctgct
     3001 gccataattg acccctgaac ttgattactc taacctgcac ggctgatgct gttgggtact
     3061 taaagagcgg aggttggcag agccgccgtg ccgtcttgca cgaatttcta aacggcgcgc
     3121 gccgcgtaag cctcagcctt tttagcttca ctcccccacc cggtcccgac tttgaatgaa
     3181 aattt
//
LOCUS       DASPKR010000549         3035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1248475, whole genome shotgun sequence.
ACCESSION   DASPKR010000549 DASPKR010000000
VERSION     DASPKR010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3035)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1248475"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1519
                     /locus_tag="VD968_14835"
     CDS             <1..1519
                     /locus_tag="VD968_14835"
                     /inference="COORDINATES: protein motif:HMM:NF019344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HYE15716.1"
                     /translation="GSLDAANILKPALSRGEIQCIGATTPAEFRKSIEKDRSLERRFQ
                     AVKVPPPSEEEAISILEGVRERYEAFHQVRYTEDAIEAAVYQSNRYIPDRFLPDKAID
                     VIDEAGARVKLRARRDSPAGMTRGDIFDDRSSIYLRGPSLAGTPLEDEEMLATVEVTK
                     DDVEEVIARWTGIPVTSLKEEETHKLLRIEEELRCRVIAQRPAISALARSIRRSRAGL
                     KNPHRPVGSFLFLGPTGVGKTEVARSLAEFLFGSERSMIRFDMSEFMEKHSVSKLIGS
                     PPGYVGHEEGGQLTERIKRSPYSVLLFDEIEKAHPDIFNVLLQVFEDGILTDALGNTV
                     DFKNAIIIMTSNIGARFIQKKGAMGFQASPDASREKMEEMVMNAVRHTFNPEFINRLD
                     EIIIFDQLRDEELLEIVGLQVEQLNKTLGRRGLEVRLTEGAKRWVVEKTCGDRSYGAR
                     PLRRALQKYVEDPLSDALISGALAGASVIEVFLDGVELSYRPAGVEEPGDALLIH"
     gene            1827..>3035
                     /locus_tag="VD968_14840"
     CDS             1827..>3035
                     /locus_tag="VD968_14840"
                     /inference="COORDINATES: protein motif:HMM:NF018899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HYE15717.1"
                     /translation="MRIRAQWILLSAVFVCGLVVLAGEPLLPGWAARAQEPAASGQQQ
                     ELVEEVQIEGNRRLRDEDILYHIQTRAGDPFNEAQVRRDLQALLNLPFFDKTETRVST
                     ERGPSGGRIVIFTVRELPVIRQIEFKGLKALAEADLLKAFRERRVGVSKETSFDPVKV
                     NNARRVIRELLAERGYPNAAVEVVSDEVSATSVALTFNIDQGDRVRVVDIQFEGNQVF
                     SDGELRGAMKYVKEAGLISRFKGQDILHLEKLDADLRYNVLNHMRSKGYLEARTGEPQ
                     VEGVGPRRTGFPVLPLPLLSSVDEGLRITVPVTEGKLYRLGEIKIEGNSIYSEELIRQ
                     VIGLRAGEIANGERIAKAVYEDLKNLYGRSGFIQYEPEITPEFKPNPQNPNEGIADFT
                     ITINEGKQFTL"
BASE COUNT          560 a         1052 c          945 g          478 t
ORIGIN      
        1 gggctcgcta gacgcggcca acatcctcaa gccggccctc tcgcgcggcg agatacagtg
       61 cataggcgcc accacgcccg ccgagttccg taagtcaatc gagaaagacc gctcgctcga
      121 gcggcgcttc caggccgtca aggtgccgcc gccgtcggag gaggaggcca tcagcatcct
      181 cgaaggcgtg cgcgagcgct acgaggcttt ccaccaggtt cgctacacgg aggacgccat
      241 cgaggccgcc gtctatcagt cgaaccgcta catccccgac cgcttcctcc ccgacaaggc
      301 gattgacgtg attgacgagg ccggcgcccg cgtcaagctc cgcgcccgcc gcgactcccc
      361 ggccggcatg acacgcggcg acatcttcga cgaccgcagc agcatctacc tgcgcggccc
      421 ctcgctcgcc ggcacgcccc tcgaagacga ggagatgctc gccaccgtcg aagtgacgaa
      481 ggacgacgtg gaggaggtca tcgcccgctg gaccggcatc cccgtaacgt ccttgaagga
      541 ggaggagacg cacaagctcc tgcgcatcga ggaggagctg cgctgccgcg tcatcgcgca
      601 gcgcccggcc atctcggccc tcgcgcgctc gataaggcgc tcgcgcgccg ggcttaagaa
      661 cccgcaccgc cccgtcggct cgttcctctt cctcggcccc acgggcgtcg gcaagacgga
      721 ggtggcgcgc agcctcgccg agttcctctt cggctccgag cgctcgatga tacgcttcga
      781 catgtcggag ttcatggaga agcactcggt ctcgaagctc atcggcagcc cgcccggcta
      841 cgtcggccac gaggagggcg ggcagctcac agagcgcatc aagcgctcgc cctactccgt
      901 cctgctcttc gacgagatag agaaggcgca ccccgacatc ttcaacgtgc tgctgcaagt
      961 cttcgaggac gggatactga ccgacgcgct cggcaacacc gttgatttca agaacgccat
     1021 catcatcatg acctccaaca tcggcgcgcg cttcatacag aagaagggcg cgatgggctt
     1081 ccaggcttct cctgacgcct cgcgcgagaa gatggaggag atggtgatga acgccgtgcg
     1141 ccacaccttc aaccccgagt tcatcaaccg cctggacgag ataatcatct tcgaccagct
     1201 tcgggacgag gagcttctgg agattgtcgg ccttcaggtc gagcagttga acaagacgct
     1261 ggggcggcgc gggctcgaag tccggctgac cgagggcgcg aagcgctggg tggtcgagaa
     1321 gacctgcggc gaccgctcct acggggcgag gccgctcagg cgcgcgctcc agaagtacgt
     1381 agaagacccg ctctccgacg cgctcatctc gggcgcgctc gcgggcgcct ccgtcataga
     1441 ggtcttcctc gacggcgtcg agttgagcta ccgccccgcc ggtgtcgagg agccgggcga
     1501 cgcgctcttg attcactgag ggagtcagga gacggaagtc aggggacaga gtaaaggcac
     1561 taaagccttt ttcttctgtc ccctgacttc tgttttgggg gctttccctg tataatgcgc
     1621 cactttgcgg gagacggcgg ctggcaacgg tgggcggccc ggcgtgaatc aaaaggctgc
     1681 ccgaaatcgt taaggtggcg cccgcgccgc ggcggcccac gcccgagtgc cgcccacggg
     1741 cggccccgtt ctgtcccgga aggtctctta aaatactgtc tcccgaaatc attcgaccgc
     1801 agtctttgag ccgaaacacc aaccttatgc gtattcgcgc gcagtggatt cttctctcgg
     1861 ccgtcttcgt gtgcggcctc gtcgtgctgg cgggcgagcc cctgctgccg ggctgggcgg
     1921 cccgcgcgca ggagccggcg gcctcgggcc agcagcagga gctggtcgaa gaggtgcaga
     1981 tcgagggcaa ccgccgcctg cgcgacgagg acatcctcta ccacatacag acgcgggccg
     2041 gcgacccctt caacgaggcg caggtgcgcc gtgacctgca ggccctgctc aacctcccgt
     2101 tcttcgacaa gaccgagacg cgcgtctcga ctgagcgggg gccgagcggc ggccgcatcg
     2161 tcatcttcac cgtcagggaa ctgcccgtaa tccgccagat cgagttcaag ggcctgaagg
     2221 ccctcgccga ggccgacctc ctgaaagcct tccgcgagcg gagagtcggc gtctcgaagg
     2281 agacctcgtt cgaccccgtc aaggtcaaca acgcccgccg cgtcatacgc gagctgctgg
     2341 ccgagcgcgg ctacccgaac gcggccgtcg aggtggtctc cgacgaggtc tcggccacct
     2401 ccgtcgcgct caccttcaac atcgatcagg gcgaccgcgt ccgcgtcgtt gacatacagt
     2461 tcgagggcaa ccaggtcttc tccgacggcg agctgcgcgg cgcgatgaag tacgtcaagg
     2521 aggcgggcct catctcgcgc ttcaaggggc aggacatact ccacctggag aagctcgacg
     2581 cagacctgcg ctacaacgtc ctcaaccaca tgcgctctaa gggctatctt gaggcgcgca
     2641 cgggcgagcc gcaggtcgag ggcgtgggcc cgcgccgcac gggcttcccc gtcctcccgc
     2701 tcccgctcct ctcctccgtt gacgagggcc tgcgcatcac cgtccccgta accgagggga
     2761 agctctaccg cctcggcgag ataaagatcg agggcaactc catctactcc gaggagctca
     2821 tccgccaggt catcggactc cgcgcgggcg agatcgccaa cggcgagcgc atcgccaagg
     2881 ccgtctacga ggacctgaag aacctctacg gccgctcggg cttcatccag tacgagcccg
     2941 agatcacgcc cgagttcaag cccaacccgc agaaccccaa cgagggcatc gccgacttca
     3001 ccatcaccat caacgagggc aagcagttca cgctc
//
LOCUS       DASPKR010000550        12280 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1248491, whole genome shotgun sequence.
ACCESSION   DASPKR010000550 DASPKR010000000
VERSION     DASPKR010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12280)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12280
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1248491"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(36..932)
                     /locus_tag="VD968_14845"
     CDS             complement(36..932)
                     /locus_tag="VD968_14845"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HYE15718.1"
                     /translation="MTQELQFRVDEGEAGARLDEFLAARLLALSRMRIAGLLASGACT
                     VNGSAASAGRKLSAGDRVALSAPAGAAPNSMTPEPLPLEVVHEDEHLIVVVKPSGVLV
                     HPTLGVKTGTLANALAYRLNSGAGATPVRPGIVHRLDRETSGLLVVAKTQAALSRLSQ
                     HFRRRLVEKRYLAVVGGSVGAEEQVINAPVGREEGARPPWRVLESGKQAETRLRVLER
                     GRGRALVELEPVTGRTNQLRIHCAHAGHAIVGDRWYGGEPHARLCLHAARLAFHHPAT
                     NEWAEFSSPLPDEVASALGAIS"
     gene            complement(942..1907)
                     /locus_tag="VD968_14850"
     CDS             complement(942..1907)
                     /locus_tag="VD968_14850"
                     /inference="COORDINATES: protein motif:HMM:NF014704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009403 - toxin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HYE15719.1"
                     /translation="MGVTFVDVLLVAVVLLSAWGGWRRGFLLGLLDLGRWAGSLLAGL
                     RFYQPVARWLGPRVDLWGDAWDMPAAFLLVAAAAGIIIHLAGAALLGRLPKDVHEGAT
                     NRALGILPGFASGLITAAILSALLMAMPLPELARNSSRESAIANQLATYTERLEGALT
                     PIFDDAIRQTLNRLTIRPESGERVDLNYTVENTRPRPDLEARMLELVNRERAAAGLAP
                     LAPDPVLTEVARKHSADMFARGYFAHITPEGSDPFDRMREDHVTFRTAGENLALAPTV
                     QIAHTGLMNSPGHRANILRPEFGRLGIGIMDGGFRGLMVTQNFRN"
     gene            complement(1929..3014)
                     /locus_tag="VD968_14855"
     CDS             complement(1929..3014)
                     /locus_tag="VD968_14855"
                     /inference="COORDINATES: protein motif:HMM:NF005495.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE15720.1"
                     /translation="MGVKLRKLGEQVIVITGASSGIGLVTARMAAERGAKVVAAARAE
                     EALRRLAEEINARGGEAAYVVADVSREEDVRRIAEAAVARFGRIDTWVNNAGVSIYGR
                     LISIPVEDMRRLFDTNFWGVVYGSRVAVEHLRGRGGALINVGSAVSERAIPVQGIYSA
                     SKHAVKGFTDALRVELEEEGLPVSVTLVKPASIDTPFTEHAKNFMEVEPDLPPPVYAP
                     ETVAEAILHCAETPERDVFVGGGGKAMALMDKLAPRLGDKYMETFMFDAQKSGEPARD
                     HGDRGLRRPSGTLKERGGRPSYVSESSLYTKASLHPLLTGALFVGAGLAVAALLLPAR
                     ANGRGRGGDAHERQGSWPSASGLPAEG"
     gene            complement(3036..3497)
                     /locus_tag="VD968_14860"
     CDS             complement(3036..3497)
                     /locus_tag="VD968_14860"
                     /inference="COORDINATES: protein motif:HMM:NF024773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HYE15721.1"
                     /translation="MPDETQEGGDWRMNLVETDRGIRELLAETRRVAVLGIKTEAQSY
                     QPAFYVPQYLARAGLEVVPVPVYYPEATHILGEKVYRRLADIPGDVDMVNVFRRPADV
                     PAHLEDILAKRPRSVWMQSGIRNDEVAERLARAGIKVVQNRCLMVEHRRIG"
     gene            3628..4587
                     /locus_tag="VD968_14865"
     CDS             3628..4587
                     /locus_tag="VD968_14865"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hexose kinase"
                     /protein_id="HYE15722.1"
                     /translation="MSKRGARFGMILVVNLNLAVDYLLGVRALRPGEVHRATGSARMP
                     GGKGVNAARVLKTLGEPALLTGFLGGRAGEEIADGLRAEGVEFDCVRVGGESRTCLIL
                     CDDEARAQTVVNEPGPALTAGEWGEFNRAFTRLVRDSNLIIITGSLPPGLPADSYARL
                     VNAARSAGKETLLDCAGPALSEALKAGPRFVKVNGAEAAALLGREVEGLDAAAAAAAE
                     IVKSGAGGAMVTLGALGAVLDDGGAVHRLTPPRVEAANSVGSGDAALAGLAAAMRRGQ
                     TAETAGRLAVAAGAANALRGMGRCTAEEIEEMLRGVVCETARG"
     gene            complement(4590..4961)
                     /locus_tag="VD968_14870"
     CDS             complement(4590..4961)
                     /locus_tag="VD968_14870"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE15723.1"
                     /translation="MKLRTLVVDDEPLARKRILRLLGDEPDVEVIGECSDGLEAVAAV
                     RERSPDLVFLDVQMPELDGLGVLEEVGGRARPFFVLVTAYDHYAESAGAHDYILKPFD
                     RERLRGALDRARARLCPTAAQ"
     gene            complement(5089..5856)
                     /locus_tag="VD968_14875"
     CDS             complement(5089..5856)
                     /locus_tag="VD968_14875"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HYE15724.1"
                     /translation="MKIRTLIVDDVALARRRIRRHLGADPDFEVVGECSDGREAVEAV
                     RNLKPDLVFLDVQMPEMDGFRALEELGGEAPPAVIFVTAHDQFALRAFEVHALDYLLK
                     PFDPERLAAAAARAKAQLAGARGTGVSERLRALLQDIRQPQPKFLKRLAVKAGGRVIF
                     LTADEIDWIETAGNYLKIHAGKASHLIRERMSQMEARLDPERFARIHRTTLVNIDRIK
                     EMHPLFNGDQLVRLSDGRELTMSRTYRDRLMSLLERR"
     gene            complement(5868..6992)
                     /locus_tag="VD968_14880"
     CDS             complement(5868..6992)
                     /locus_tag="VD968_14880"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HYE15725.1"
                     /translation="MPLNRRRLLKLLRGAGLILACWTFVALLFTPQTYTANTRSPTPL
                     TWAQSFWANLVLFYTYAAMTPLALRLGRRFPLGQQRPLHNFAVLFALGFPFAAAHVFV
                     LNYANELLLPSLRNYVPPAPVLALVLNVGAMSVMVYWGIIAVGHAADYFRKYRERELD
                     LARAQLRALKTQLHPHFLFNTLNAVSELVYESPGEADRAITQLSDLLRQSLKTGDAQE
                     VTLKEELDFLEKYVAIQRTLMRERLEVRWDVDDSTLDACVPNMLLQPLVENSIRHGLA
                     PRVGGGLIEIVTRRRGDVLHMRVSDDGPGLPRRAGRGAYVPKSDSTGLGLANTRERLR
                     HLYDGAHRFELGETPGGGLTVSVAIPFREKEAGEEEGASG"
     gene            7296..8831
                     /locus_tag="VD968_14885"
     CDS             7296..8831
                     /locus_tag="VD968_14885"
                     /inference="COORDINATES: protein motif:HMM:NF039907.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HYE15726.1"
                     /translation="MKRRDFMMKGSLAMAAVATSDLWLGRVVAGEEAKSLPILDTYFQ
                     VSKEEMQKLLAAALSKGADFADLFFEYRVTSNLTFEEDQVKNARRGIVSGVGIRAIRG
                     DQVGYAFSEDLTMPSMLEAANSAAAIANDKTARVKVVGVTDLKPRNLYPILETVTSAD
                     LSKKLALIKEANEAAKAYSPKVARVQVYFGDEARYLAYANSEGKFWQDMQPYFTFTTG
                     VLAEEGSNRQQSYETGGGRIGLEYFAKRRRPADIAKEAARMAVLNLGAQEADAGAQTV
                     VLGAGDSAVLLHEAVGHGLEADFNWKKLSNFSGRVGQKVASDVCTVIDAGTFENLAGT
                     INVDDEGNLPTSTTLIEAGTLRGYMADHISARQLGVKPTGNGRRQAYNFTPQARMTNT
                     YMKPGTSDPEEIIRSVKRGVYAKKFSGGQVDITKGDFTFSVLESYLIEDGKITAPLKG
                     VTLIGNGPEVMTKVTMVGNDLKFTDAGWTCGKSGQSVPVGMGIPTVKVSEITVGGTKV
                     KKA"
     gene            8861..10216
                     /locus_tag="VD968_14890"
     CDS             8861..10216
                     /locus_tag="VD968_14890"
                     /inference="COORDINATES: protein motif:HMM:NF039907.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TldD/PmbA family protein"
                     /protein_id="HYE15727.1"
                     /translation="MQDYRNLATELVAAFKKQGVDAVDVFVVTSSNFNTTVRAGQIEK
                     LQQSISKGLGMRIFKAGAQALTFTTDFTDKSVKSLVAQALDIVQVSNPDKYNGLAPKE
                     LLGSYDGKLQMFDESLAKVTPERKIEIAKEMEAAGRALDKRITNTRGSSWSDTTRQVT
                     LANSDGFAGQFRTTSANMSLSMLAEENGVKQTDYWFSTARYFDKLASPKSVGEEAARR
                     ALRKLGGRKVKSQKVPVVVAPEISNGLVSMVFGAASGGSVWRKSSFLIDKVGAEIASP
                     LVHIIDDATMEDGLASRPFDGEGVRSSRVALVEGGVLKTYVCDSYSGRRLNVKPTGNT
                     ARGYSSGPSVSATNLYMKAGTTDPKEIIKGVKSGLYLTALPSFGQGFNNVTGDFSEGA
                     QGFWIENGEVTYPVQEITLAGNILTLLKSITAVGNDLSFRLGSTAAPTLLISEATVGG
                     E"
     gene            complement(10295..11224)
                     /locus_tag="VD968_14895"
     CDS             complement(10295..11224)
                     /locus_tag="VD968_14895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15728.1"
                     /translation="MITVKPNRLRAALLLLAICASAYGAAATQDVGETETRDQGQIRF
                     ARGASSTTVRGNLPRGFRDQYLVRARPGQWMSVRLDSEDPGMGFDVFVTEGLGAEPVT
                     EADKLQREWVGRLPQGDEYYINVMTAGRGAAYSFEVSITNARPARRPAAPADNSGASG
                     SPVAKELRTVLSKIKAEGAGGVPVLLPGELPASVLEDRLYVEGGASDRGYDISLALTP
                     RCGANACTVGSFSAERGGELVEEFERVELAGGLRGAYKPLTCGASCSPAMIEWVAGGV
                     LYSVQLKLNAGGDAGDRAALIALANSAIKAGPR"
     gene            complement(11531..>12280)
                     /locus_tag="VD968_14900"
     CDS             complement(11531..>12280)
                     /locus_tag="VD968_14900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15729.1"
                     /translation="DAALFDVPADYRLVKDASEMYSASAVMNAAQGGDDDDNDDGAGQ
                     ASTGGMPVNVAGGAPQTQAAEGPKKPGVVRVGLVLPRATAAEGLDPNVLAEAVRNTTA
                     SYLAGPALEVVKLDARLPEQAEAEALKRECDYVLTMTVAHKKGGGGGFGMFKKIAPIA
                     GSAVPYGGSHGGAVAAGVATTAIYTAADFSANVKSKDELTIEYQMRGAQGGAPVLARS
                     LKAKAKSNGEDLISQLIEQAAAEVLTAATRK"
BASE COUNT         1947 a         4210 c         4187 g         1936 t
ORIGIN      
        1 ccgcgcgatt gaattatttt atcaaacgga tttcgttaac ttatcgcgcc gagcgccgag
       61 gctacttcat ccggcagggg cgaagagaac tccgcccact cgttcgtcgc cgggtgatgg
      121 aaggcgagcc gcgccgcgtg caggcacagg cgcgcgtggg gctcgccgcc gtaccagcgg
      181 tcgccgacga tggcgtggcc cgcgtgcgcg cagtgtatgc gtagctggtt cgtgcggccc
      241 gtcacgggct cgagctcgac gagcgcccgg ccgcgccccc tctccaacac gcgcaggcga
      301 gtctccgcct gcttccccga ttcgagcacg cgccaaggcg gccgggcgcc ctcctcccgc
      361 ccgacgggcg cgttgatgac ttgctcttcg gccccgacgc tcccgccgac gacggccagg
      421 tatctcttct cgaccagcct gcggcggaag tgctgcgaga gccggctgag cgcggcctgc
      481 gtcttagcga cgacgagcag gcccgatgtc tcgcggtcga gccggtggac gatgccgggg
      541 cgcacgggcg tcgcgcccgc cccgctgttg aggcggtaag cgagcgcgtt tgcgagcgtc
      601 cccgtcttga cgccgagcgt cgggtggacg agcacgcccg agggcttgac gacgactatc
      661 aggtgctcgt cctcgtgcac gacttcgagg ggcagcggct ccggcgtcat cgagttcggc
      721 gcggcgccgg ccggcgccga gagcgcgacg cggtcgcccg ccgagagctt ccggcccgcc
      781 gacgcggccg agccgttcac cgtgcacgcg ccagaggcca gcagccccgc gattcgcatg
      841 cggcttaacg ccagcagccg cgcggcgagg aactcgtcga gacgcgcgcc ggcctcgcct
      901 tcgtcaacgc ggaattgtag ctcctgcgtc accggcagtt ttcagttgcg gaagttctgc
      961 gtgaccatca agccgcgaaa gccgccgtcc atgatgccta ttccgaggcg gccgaactcg
     1021 ggccggagga tgttggcgcg gtggccgggc gagttcatca ggcccgtgtg ggctatctgg
     1081 acggtgggcg cgagcgcaag gttctcgccc gccgtgcgga acgtgacgtg atcctcccgc
     1141 atgcggtcga atgggtcgct cccctcgggc gttatgtgcg cgaagtagcc gcgcgcgaac
     1201 atgtcggccg agtgcttgcg cgcgacctcc gtcagaacgg ggtcgggcgc gagcggcgcg
     1261 aggccggccg cagcgcgctc gcggtttaca agctcgagca tgcgcgcttc gaggtcgggg
     1321 cgcgggcgcg tattctctac ggtgtaattt agatctaccc gctcgccgga ctcgggccgt
     1381 atggtcaggc ggttgagcgt ctggcgtatg gcgtcgtcga agatgggggt gagcgcgcct
     1441 tcgagccgct cggtgtaggt tgccagctgg ttggcgatgg cgctctcgcg cgaggagttg
     1501 cgcgcaagct ccggcagcgg catcgccatc agcagggcgg agagtatcgc cgccgtgatc
     1561 agcccgctcg cgaagcccgg caggatgccg agcgcgcggt tcgtcgcgcc ttcgtgaacg
     1621 tccttcggca gtcggcccag gagcgccgcg cccgcgaggt gaatgattat gccggcggcg
     1681 gcggccacca gaaggaaggc ggcgggcatg tcccacgcgt cgccccagag gtcaacgcgc
     1741 ggcccgagcc agcgcgccac gggctggtag aagcgaagcc ctgcgagcaa acttcccgcc
     1801 cagcgcccga ggtcgagcaa ccccagcagg aagccgcgcc gccagccgcc ccacgcgctc
     1861 agcagtacga ccgccaccag cagcacgtca acgaaagtca cgcccatcgc agcctgaagc
     1921 ccggcccttt agccttcggc cggcagcccc gaggccgacg gccatgagcc ctgacgctcg
     1981 tgcgcgtcgc cgccccggcc gcggccgttg gcgcgcgcgg gcagaaggag cgccgcgacg
     2041 gcgaggccgg cgccgacgaa gagcgcgccc gtgagcaagg ggtggagcga ggccttcgtg
     2101 tagaggctcg actcggagac gtaagacggg cggccgccgc gctccttgag tgtgcccgac
     2161 gggcggcgga ggccgcggtc gccgtgatcg cgcgccggct caccggactt ctgcgcgtcg
     2221 aacatgaagg tctccatgta cttgtcgccg agtcgcggcg cgagcttatc catcaaggcc
     2281 atcgccttgc cgcccccgcc cacgaacacg tcgcgctcgg gcgtctcggc gcagtgcagt
     2341 atggcctccg cgacggtctc gggcgcatag acgggcggcg gcaggtcggg ctcgacctcc
     2401 atgaagttct ttgcgtgctc ggtgaacggc gtgtcaatcg aggccggctt tacgagcgtg
     2461 acggagacgg gcagcccctc ctcctcgagc tcgaccctga gcgcgtcggt gaagcccttg
     2521 acggcgtgct tcgacgcgct gtagatgccc tgcacgggga tggcccgctc ggagacggcg
     2581 ctcccgacgt tgatgagagc gccgccccgg ccgcgcaggt gctcgaccgc cacgcgcgag
     2641 ccgtaaacga cgccccagaa gttcgtgtcg aacagccgcc gcatgtcctc gacggggatg
     2701 cttatgagcc tgccgtatat ggagacgccc gcgttgttga cccacgtgtc tatgcgcccg
     2761 aagcgcgcga cggccgcctc ggctatgcgt cgcacgtcct cctcgcgcga aacgtcggcg
     2821 acgacgtaag cggcctcgcc gccgcgcgcg tttatctcct cggccagtcg cctgagcgcc
     2881 tcttcggcgc gcgccgccgc gacgaccttc gcgccgcgct ccgcggccat cctcgccgtc
     2941 acgagcccta tcccgctcga agcgcccgtg atgacgatca cctgctcgcc caacttccta
     3001 agcttcactc ccatctttcg gccctcccct tagattcaac caatgcgccg gtgctcgacc
     3061 atcaggcagc gattctgcac tactttgatg ccggcgcggg cgagccgctc ggccacctcg
     3121 tcgtttcgta tgccggactg catccagacc gagcgcggcc gcttggcgag tatgtcttcg
     3181 aggtgcgcgg gcacgtccgc cggtcggcgg aagacgttga ccatgtcaac gtcgccgggg
     3241 atgtcggcga gcctgcgata gaccttctcg ccgagtatgt gcgtcgcctc cgggtaatag
     3301 acggggacgg gcacgacttc gagccccgcg cgcgcgaggt actgcgggac gtagaaggcc
     3361 ggctggtacg actgcgcctc ggtctttatg ccgagcacgg ccacccgccg cgtctcggcc
     3421 agcagctcgc gtatgccgcg gtctgtctcc acgaggttca tgcgccagtc cccgccctcc
     3481 tgcgtctcat ccggcatcac tcgttcgcct cctccgaatg gatgttcact atcgggacgt
     3541 gcgcgccgcc gaaacagtac gcgcgcgcgc cttgtgccgc cttacgtttt cgagcatttt
     3601 attgtaagcc taatccgtgt gtgcttcgtg agcaagcgcg gtgccagatt cggcatgatt
     3661 ctcgtcgtca atttgaacct cgcggttgac tacctgctgg gcgtgcgcgc gctgcggccg
     3721 ggcgaagtcc accgcgccac agggtcggcg cgcatgcccg gcggcaaggg cgtcaacgcc
     3781 gcgcgcgtgc tcaaaaccct gggcgagccg gcgcttttga caggcttcct cggcggccgc
     3841 gccggcgaag agatagccga cggcctgcgc gccgagggcg tagagttcga ctgcgtgcgc
     3901 gtcggcggag agagccgcac gtgcctgata ctgtgcgacg acgaggctcg cgcgcagacg
     3961 gtcgtcaacg agcccggccc cgcgctcacc gccggcgagt ggggggagtt caaccgcgcc
     4021 ttcactcggt tagttcggga cagcaatctc atcattatca ccggcagcct cccgcccggc
     4081 ctgcccgctg attcttacgc ccgactcgtc aacgcggcgc gctccgctgg gaaggagacg
     4141 ctgctcgact gcgccggccc agcgctctcg gaagcgctca aggccgggcc gcgcttcgtg
     4201 aaggtcaacg gcgcggaggc cgccgccctg ctcgggcgcg aggtcgaggg cctcgacgcc
     4261 gcggccgccg cggccgcgga gattgttaag tcgggggctg gcggcgcgat ggtgacgctc
     4321 ggcgcgctcg gcgcggtgct cgacgacggc ggtgctgttc acaggctcac gccgccgcgc
     4381 gtcgaggcgg cgaacagcgt gggctcgggc gacgcggcgc tcgcgggcct ggccgccgcg
     4441 atgaggcgcg ggcaaacggc ggagacagcg ggccgcctcg ccgtcgcagc cggggcggcg
     4501 aacgcgctgc gaggcatggg ccgctgcacg gcggaggaga ttgaagagat gctgcgcggc
     4561 gtggtttgcg aaacggcgcg gggttgagct tactgcgcgg ccgtggggca gaggcgcgcg
     4621 cgagcgcggt ctagcgcgcc gcgcaggcgc tcgcggtcga agggcttgag tatgtagtcg
     4681 tgcgcgcccg cgctctcggc gtagtggtcg taggcggtga ctaggacgaa gaaggggcgc
     4741 gcacgccccc cgacctcttc gagcacgccg agcccgtcca gttcaggcat ctgcacgtcc
     4801 aagaagacga ggtcgggaga gcgctcgcgc acggccgcga ccgcttcgag cccgtcggag
     4861 cactcgccta tcacttccac gtcgggctcg tcgccgagca ggcgcagtat ccttttgcgg
     4921 gccagcggct cgtcgtcaac taccagcgtc ctcaatttca tcgcgcgcgc ccccacgcgc
     4981 cggatgttac agcgcggccg cgccgcgccg cgagcgattt gtgacggggc gcgccctggc
     5041 cgtgacggga cgcgcctgcg gcgcgacgaa cgacgcgccg gccgcccttc agcgcctttc
     5101 gagcagggac atcagccggt cgcggtaggt gcggctcatg gtcagctcac ggccgtcgga
     5161 gagtcgcacg agttggtcgc cgttaaagag cgggtgcatc tccttgatgc ggtcaatgtt
     5221 gactagcgtg gtgcggtgta tgcgggcgaa gcgctcgggg tctaggcgcg cctccatctg
     5281 gctcatgcgc tcgcgtatca agtgcgacgc cttgccggcg tggattttga ggtagttgcc
     5341 ggccgtctct atccagtcta tctcgtcggc cgtgaggaag atgacgcggc cgccggcttt
     5401 gaccgcgagc cgcttcaaga atttgggctg cggctgccgt atgtcctgaa ggagcgcgcg
     5461 cagccgctcg ctcacgcccg tgccgcgcgc gcccgcgagc tgcgccttcg cgcgcgcggc
     5521 ggccgcagcc agccgctccg ggtcgaaggg cttgagcaga tagtcgagcg cgtgaacctc
     5581 gaaggcgcgc agcgcgaact ggtcgtgggc cgtgacgaag atgacggccg gcggggcctc
     5641 gccccccagc tcttcgagcg cgcggaagcc gtccatctcg ggcatctgca cgtccaaaaa
     5701 aaccaagtcg ggcttcaggt tcctgacggc ctcgaccgcc tcgcgcccgt ccgagcactc
     5761 gcccacgacc tcgaagtcgg ggtctgcgcc caggtgcctg cgtatgcgcc ggcgcgccag
     5821 cgccacgtcg tcaacaatca gcgtccttat cttcatcgcg gaaagcttca gcctgaagcg
     5881 ccctcttctt cgcccgcctc tttttccctg aaaggtatcg cgacgctgac ggtgaggccg
     5941 ccgcccggcg tctcgcccag ctcgaagcgg tgcgcgccgt cgtagaggtg gcgcaggcgc
     6001 tcgcgcgtgt tcgcgaggcc caggcccgtc gagtcgctct tcgggacgta ggcgccccgg
     6061 cccgcccggc gtggcaggcc cggcccgtcg tccgagacgc gcatatgcag cacgtcgcct
     6121 cgccgccgcg tgactatctc tatcagcccg ccgcccacgc ggggcgcgag cccgtgtcgg
     6181 atggagttct ccacgagcgg ctgcaagagc atgttcggca cgcaggcgtc gagcgtcgag
     6241 tcgtccacgt cccagcgcac ttcgagccgc tcgcgcatga gcgtccgctg gatggcaacg
     6301 tacttctcga ggaaatcaag ctcctccttg agcgtcacct cctgcgcgtc gcccgtcttc
     6361 agggactgcc gcagaaggtc gctcaactgc gtgatggcgc ggtcggcctc acccggagac
     6421 tcgtaaacca gctccgagac cgcgttcagc gtgttgaaga ggaagtgcgg gtgtagctgc
     6481 gtcttcaggg cgcggagctg cgcccgcgcg aggtctagct cgcgctccct gtacttgcgg
     6541 aagtagtctg cggcgtggcc gacggcgatg atgccccaat agaccatcac gctcatcgcg
     6601 ccgacgttca ggacgagcgc gagcacgggc gcgggcggca cgtagttgcg cagggaaggc
     6661 agcagaagct cgttggcgta gttgagcacg aatacgtgcg cggccgcgaa cgggaagccg
     6721 agcgcgaaga gcaccgcgaa gttatgaagc gggcgctgct ggcccagtgg gaagcgccgg
     6781 ccgagccgga gcgccagcgg cgtcatcgcc gcgtaggtgt agaagagcac gaggttcgcc
     6841 cagaaggact gggcccacgt cagcggcgtc ggcgagcgcg tgttggccgt gtaggtctga
     6901 ggcgtgaaga gcagcgcgac gaacgtccag cacgcgagta tgagccccgc gcccctgagc
     6961 agcttcagca gtctccgcct gttaagtggc atccgtggca ggcccggccg gccgggtcag
     7021 gacttaaaca cgcatttttc ccgaggaatg tttcgggaaa tgcgcgcggc ggcgacgggt
     7081 cggttcgtca cgcgcgggcg cgctctcgtc cccgcagcgc ggcgtttcgt cacaaaagag
     7141 tgacgcgcgc gcccgcgcgt taattatact gcgccgcttc ccgcgagccg gcggcgcgcc
     7201 ctcgcgcccg ccccgaagaa ttcccaaacg ctaaggctgg ccttcgaccg acacgcgcgg
     7261 cggggcgccg aatccccgag gaggacggag agagaatgaa gagacgtgat ttcatgatga
     7321 agggctccct cgctatggcg gccgtcgcga cgagcgacct gtggctcggc cgcgtcgtgg
     7381 cgggcgagga ggcgaagagc ctgcccatac tcgacacata cttccaggtc agcaaggagg
     7441 agatgcagaa gctcctcgcc gccgcgctct cgaagggcgc agacttcgca gacctcttct
     7501 tcgagtaccg cgtcacctcg aaccttacgt tcgaggagga tcaggtcaag aacgcccggc
     7561 gcggcatcgt ctccggcgtc ggcatacgcg ccatacgcgg cgaccaggtc ggctacgcct
     7621 tctccgaaga cctgacgatg cccagcatgc tcgaggccgc caactcggcc gccgcaatcg
     7681 ccaacgacaa gacggcgcgc gtgaaggtcg tcggcgtcac cgacctgaag ccccgcaacc
     7741 tctaccccat cctcgaaacg gtgacgagcg ccgacctctc caagaagctc gcgctcatca
     7801 aggaggccaa cgaggcggcg aaggcttaca gcccgaaggt cgcgcgcgtg caggtctatt
     7861 tcggcgacga ggcgcgctac ctcgcctacg ccaacagcga gggcaagttc tggcaggaca
     7921 tgcagcccta cttcaccttc acgacgggcg tgctggccga ggagggctcg aaccgacagc
     7981 agtcctacga gacgggcggc gggcgcatcg gcctcgaata cttcgccaag cggcgccgcc
     8041 ccgccgacat cgccaaggag gcggcgcgca tggcggtgct gaacctcggc gcgcaggagg
     8101 ccgacgccgg cgcgcagacc gtcgtgctcg gcgcgggcga ctcggccgtg ctcctgcacg
     8161 aggcggtcgg ccacgggctc gaggccgact tcaactggaa gaagctctcc aacttctcgg
     8221 gccgcgtcgg gcagaaggta gcctccgacg tctgcaccgt cattgacgcc ggcacgttcg
     8281 agaacctcgc cggcaccatc aacgttgacg acgagggcaa cctcccgacc agcaccaccc
     8341 tcatcgaggc ggggacgctt cgcggctaca tggccgacca cataagcgcc cgccagttgg
     8401 gcgtgaagcc cacgggcaac ggccgccggc aggcttacaa cttcacgccg caggcgcgca
     8461 tgacgaacac ctacatgaag cccggcacga gcgaccccga ggagataatc cgctcggtca
     8521 agcgcggcgt ctatgccaag aagttctcgg gcgggcaggt ggacatcacg aagggcgact
     8581 tcaccttctc ggtgcttgag agctacctca tcgaggacgg gaagataacg gcgccgctga
     8641 agggcgtcac gctcatcggc aacggccccg aagtgatgac gaaggtcacg atggtcggca
     8701 acgacctgaa gttcaccgac gccggctgga cttgcggcaa gtcgggccag agcgtccccg
     8761 tcggcatggg cataccgacc gtgaaggtct ccgagataac ggtcggcggc acgaaggtca
     8821 agaaggctta aagacaggac tggaaggagt caaaccagag atgcaggact acaggaattt
     8881 ggctaccgag ctggtcgcgg ccttcaagaa gcagggcgtt gacgccgtgg acgtgttcgt
     8941 cgtcaccagc tcgaacttca acaccaccgt gcgcgccggc cagatagaga agctgcaaca
     9001 gtccatcagc aaggggctgg ggatgcgcat attcaaggcg ggcgcgcagg cgctcacctt
     9061 caccaccgac ttcaccgaca agtccgttaa gagcctcgtc gcgcaggcgc tcgacatcgt
     9121 gcaggtctcg aacccggaca agtacaacgg cctcgcgccc aaggagctgc tcgggagcta
     9181 cgacggcaag cttcagatgt tcgacgagtc tctggcgaag gtcacgcccg agcggaagat
     9241 agaaatagcg aaggagatgg aggccgcggg ccgcgccctc gacaagcgca tcacgaacac
     9301 gcgcggctcc agctggtctg acactacgcg gcaggtgacg ctcgcgaact ccgacggctt
     9361 cgcgggccag ttccgcacga cctcggcgaa catgtctctg agcatgctgg ccgaggagaa
     9421 cggcgtgaag cagaccgact actggttctc gaccgcgcgc tacttcgaca agctggcctc
     9481 gccgaagtcc gtcggcgagg aggccgcgcg ccgggcgctt cgcaagctcg gcgggcgcaa
     9541 ggtcaagtcg cagaaggtgc cggtcgtggt ggcgccggaa atctcgaacg gcctcgtctc
     9601 gatggtcttc ggggcggcgt ccggcgggag cgtgtggcgc aagtcttcgt tcctgataga
     9661 caaggtcggc gcagagattg cctcgccgct cgtccacatc attgacgacg cgacgatgga
     9721 ggacgggctc gcctcaaggc ccttcgacgg cgagggcgtg cgctcctcgc gcgtcgcgct
     9781 cgtagagggc ggcgtgctca agacctacgt ctgcgactcg tactcgggac gccgcctgaa
     9841 cgtgaagccc acgggcaaca cggcgcgcgg ctactcctcg gggccgtcgg tcagcgcgac
     9901 gaacctctac atgaaggccg gcactactga cccgaaggag attattaagg gcgtcaagtc
     9961 cggcctatac ctgaccgccc tgccgagctt cgggcagggc ttcaacaacg tcacgggcga
    10021 cttctccgag ggcgcccagg ggttctggat agagaacggc gaggtgacct accccgtgca
    10081 ggagataacg ctcgccggca acatcctgac gctcttgaag agcatcacgg ccgtcggcaa
    10141 cgacctctcc ttccggctgg gcagcaccgc cgccccgacc ctcctcatct ccgaggccac
    10201 ggtcggcggc gaataagaac agataaggca gaaagcagaa ggcagtgaag acgcggcgcg
    10261 cgttctgact gccttctgct ttctaccttc tgccttatct cgggccggct ttgatggcgg
    10321 agttggcgag ggctatgagg gcggcgcggt ctccggcgtc gccgcccgcg tttagcttga
    10381 gctgcacgct gtagaggact ccgcccgcga cccactcgat catggcgggg ctgcaagagg
    10441 cgccgcaggt gagcggcttg tatgcgccgc gcaggccgcc ggcgagctcc acccgctcga
    10501 actcttcgac cagttcgccg ccgcgctcgg cgctgaacga gccgacggtg caggcgttcg
    10561 cgccgcagcg gggcgtgagc gcgaggctta tgtcgtagcc ccggtcgctc gcgccgcctt
    10621 cgacgtagag cctgtcttcc aaaacggagg ccggcagttc acccggcaga aggactggca
    10681 cgccgcccgc gccctcggcc ttgattttag agagcactgt gcgcagctcc ttcgcgaccg
    10741 gcgaaccgct cgcgcccgag ttgtcggccg gggccgccgg ccggcgcgcg ggcctcgcgt
    10801 tcgtgatgct gacctcgaag gagtaggcgg cgccccggcc ggccgtcatg acgttgatgt
    10861 agtactcgtc gccctgcggc aggcgcccaa cccattccct ttgcagcttg tcggcctcgg
    10921 tgacgggctc ggcgccgagg ccctcggtca cgaacacgtc gaagcccatg ccggggtctt
    10981 cggagtcgag ccgaacgctc atccactgcc ccggccgcgc gcgcacgagg tactggtcgc
    11041 ggaagccgcg cgggaggttc ccgcgcaccg tcgtcgagct ggccccgcgc gcgaagcgta
    11101 tctggccttg gtcgcgcgtc tccgtctcgc ccacgtcctg cgtcgcagcg gcgccgtagg
    11161 ccgaggcgca aatagccagc aggagcagcg ctgcgcggag ccgatttggt ttgactgtta
    11221 tcacgcctgc ctcccgacct tagccgcagc ccgcgcgatt ctctcgcgcc tgcgccggag
    11281 cctgagctta gcgcagcgcc tcttcgcgcc gcaacgccgc ccgcccgcaa tcgtcgccgt
    11341 catcatagcc gccccctctg agccgtgcct gccgccacgc ttttgaattg ctgttcacta
    11401 actaacgcgc gaaacggtgg ccggatgaat cagcgccgcg ccgaaaagcg aggaaggcgg
    11461 gactttcgac gccccgcctt cctcgcactt ggacggccct cgcaggaggc cgttttcggg
    11521 gagactccgt tcacttccgc gtcgcggccg tgagcacttc ggccgcggcc tgctcgatta
    11581 gctgagagat taagtcctcg ccgtttgatt tggctttcgc cttgagtgac cgcgcgagga
    11641 cgggcgcgcc gccctgtgcg ccccgcatct ggtactcgat tgtcagctcg tccttcgact
    11701 tgacgttcgc ggagaagtcg gccgccgtgt agatggccgt cgtcgcgacg cccgccgcga
    11761 ccgcgccgcc gtgggagccg ccgtagggga ctgcgcttcc ggcgatcggc gctatcttct
    11821 tgaacatgcc gaagccgccg cccccgccct tcttgtgcgc caccgtcatc gtcaggacgt
    11881 agtcgcactc gcgcttcagt gcttccgcct cggcctgctc gggcagacgc gcgtcgagct
    11941 tgacgacttc gagcgcgggc cccgcgaggt aactggcggt cgtgttcctg acggcctcgg
    12001 ccagcacgtt cgggtcgagc ccctcggccg cggtcgctct ggggagcacc agcccgacgc
    12061 gaacaacgcc cggcttcttc ggcccctcgg ccgcctgcgt ctggggcgcg ccgccggcga
    12121 cgttcacggg catcccgccc gtcgaagcct gaccggcacc gtcgtcgttg tcgtcatcat
    12181 cgccgccctg cgcggcgttc atcacggccg aggcggagta catctcggag gcgtccttca
    12241 cgagccggta gtcggccggc acgtcgaaga gcgccgcgtc
//
LOCUS       DASPKR010000551         6600 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_600292, whole genome shotgun sequence.
ACCESSION   DASPKR010000551 DASPKR010000000
VERSION     DASPKR010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6600)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6600
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_600292"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VD968_14905"
     CDS             complement(<1..497)
                     /locus_tag="VD968_14905"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family zinc carboxypeptidase"
                     /protein_id="HYE15730.1"
                     /translation="MMRKTLACAALLAALFALGASAPGAAAAVPAPEDVLGFRPGEDR
                     KLAAWSSIVEYFRRLDAASDRVRFEELGKTTMGAPFVMATISAPENLARLADFKEIQR
                     QLADPRALGRGADRKAERLIARGKTIVLITCGIHSTEVGSTLSSTLIAHRLASSDDPE
                     TRRILR"
     gene            766..1629
                     /locus_tag="VD968_14910"
     CDS             766..1629
                     /locus_tag="VD968_14910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="vWA domain-containing protein"
                     /protein_id="HYE15731.1"
                     /translation="MYSSQITRANPTCVIFLLDQSGSMADPFGGDEHTRKADFVARVV
                     NNALHDLVIRCTKTEEVRNYYYVSVIGYGRAVGTALSGALSDRPLAPIADIADNPARI
                     ESGYRRVPDGAGGFVEMPVRYPVWVYPHADGGTPMCHALAQAREVLHRWLAQHPRGFP
                     PTVLHLTDGESGDGDPTPLGEEIMSLGTDDGRVLLFNCHVSSRRSRKVEYPSDDSALT
                     DGLARALFQISSPLPEPFRAAAQQLGVSVTEGSRGFVFNADPSSVVQFYEIGTSLTGM
                     APHIWMDEQDR"
     gene            1629..2387
                     /locus_tag="VD968_14915"
     CDS             1629..2387
                     /locus_tag="VD968_14915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15732.1"
                     /translation="MPARHPRLSFTKFLLPKEGARADECEDAIGADTSALRFAVADGA
                     TEAFDSGSWARSLAEGWAAPAGPAPGAESLGRWAAAEGARLHEAWEGKELPWYAEEKR
                     RAGSFAAFVGLAFEVGEDLALRFRAVALGDSCLFHLRGGELLAAVPVSRPEDFNSAPV
                     LLPSREDLRDAAVARAVALEGEARAGDLFLLASDAAAAWFLSAWGGRPTLLERFDSLL
                     AASENEALAALLRAERSEGRLKDDDVAVLRIVVG"
     gene            2401..4020
                     /locus_tag="VD968_14920"
     CDS             2401..4020
                     /locus_tag="VD968_14920"
                     /inference="COORDINATES: protein motif:HMM:NF014821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ada metal-binding domain-containing protein"
                     /protein_id="HYE15733.1"
                     /translation="MSSLTTNFWPSARAFAEAVQCPAVCFAEPQLRAMLPAVDRLGMP
                     LVTSGQFAYVFKLNSPDGAQSLAVRCFRGFLGDREVRYRAIDAHLNACRLPALPRFKY
                     LPAGALVSGRRFPVLLMEWVAGPTLDVYMGEVVGRREVLLHLADEWLKLMESLRAAGV
                     AHGDLQHGNVIVERGRLRLVDLDGMFVPALAGLQSSEVGHQHYQHPSRGADFFSREVD
                     NFSALVIYLSLLALAERPSLWAEHHDENLIFTRADFAEPNSSPLFAKVREIGAEHARL
                     ADVLAEAAKSPPEETPWVLDLAHVSSRLPAWMTAPAEVEVGGRTREVARAQVKVEEVP
                     GVWSRGRERRTASVVTSNTVQTLFGAKPPSAVAARDPSDIYGNTLFYTVSSVGNTYAY
                     VWWIPVHNLILEDVWASSYLTGAAGMLCSLMLFVAAFLLYGIFRAVYLAETGSPQAPV
                     SVMPHVLAGTTAAAAAGSQPIFASAQSVLPPPQAVAAPPRPVVGNRSLQIYHLPACAW
                     AGKIAPRNLAEFDSPASAANAGYRPCRVCAP"
     gene            4119..5411
                     /locus_tag="VD968_14925"
     CDS             4119..5411
                     /locus_tag="VD968_14925"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE15734.1"
                     /translation="MGASETGARDGGREQGAGYFELLRGNRDFRLMWLGQVVSQLGDW
                     FNTIALFTLTLDLTGSGRAVALVLVTRFLPSVVLGPLSGVVADRFNRRRVMILSDVLR
                     AVVVLGFLLIRRPEHVWMIYALTVAQLALSAFFEPARSAAIPSIVSGRELVSANAISA
                     VTWSTMLTLGAALGGPVTGWFGTDAAFVIDSLTYLVSALLVASVRLPPRAERPKTKLT
                     LSKAVGLTDTLEGISYVRNRPRVLAVLMVKPAWGLGGGILTLLPVFGEKVFAVGGSAA
                     VGMSVLYAARGVGTAVGPVLARRFGGETRERMERAIGLSFFLAGAFYAAFGASQSFAL
                     ALLFLAVAHAGGSTLWVYSTVLLQANVEDEFRGRVFAAELMLLTLTMAASNYVTGEAL
                     DRFGYSPRAVCVATGVFFTLPGLLWLLTRRLWDREARA"
     gene            complement(5444..5686)
                     /locus_tag="VD968_14930"
     CDS             complement(5444..5686)
                     /locus_tag="VD968_14930"
                     /inference="COORDINATES: protein motif:HMM:NF012725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15735.1"
                     /translation="MSFIKAPPSLSKNCCGRKPGRPRSPEEAEYLPNVAGAYAGRGQI
                     RSKRGDSDAALADFDRAVELQPQNAFVHVERGGEGA"
     gene            5676..6242
                     /locus_tag="VD968_14935"
     CDS             5676..6242
                     /locus_tag="VD968_14935"
                     /inference="COORDINATES: protein motif:HMM:NF037785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15736.1"
                     /translation="MKLKVGVMGSAGDTLPEGAAAELRAKAEGLGRALARRDCVVLTG
                     GTTGLPYAVGGAAHDAGALHVGVSPAADAREHEGRYGLPLDRCGVMIYTGFGLKGRNV
                     VLVRSCDIVLVVRGAMGALNEFTIAHDEGRVVGCLTGTGGVADEAERLMKALPKKTRA
                     VVHFDPEPERLLDLCIDSFLAGRKNSQP"
     gene            6239..>6600
                     /locus_tag="VD968_14940"
     CDS             6239..>6600
                     /locus_tag="VD968_14940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15737.1"
                     /translation="MSYEMTNVVEAVRAAAELAAGDFDSPEWALARPAHLARYWSGEP
                     APEGRRAEARLLWTAEALVARFDCRQTEPLVTSPAPRLDQKTIGLWERDVCELFVTPE
                     QGAVGRYFEFEAAPTGEWL"
BASE COUNT          883 a         2300 c         2314 g         1103 t
ORIGIN      
        1 cgcagtatgc ggcgggtttc gggatcgtcc gacgaggcga gccggtgcgc gatgagagtt
       61 gaggatagcg tggagcccac ctccgtcgag tggatgccgc aggtgatgag gacgatggtc
      121 ttgccgcgcg cgatgagccg ctcggccttg cggtctgccc cgcggccgag cgcgcggggg
      181 tctgcgagct ggcgctgaat ctctttgaag tcggcgaggc gcgcgaggtt ctccggcgcg
      241 cttatggtcg ccatgacgaa gggcgcgccc atcgtcgttt tgccaagctc ctcgaagcgg
      301 acgcggtcgc tcgcggcgtc gagccttcgg aagtattcga ctatggaaga ccacgcggcg
      361 agcttgcggt cttcgcccgg ccggaagccg agcacgtctt cgggcgcggg gactgcggcc
      421 gccgcgccgg gcgccgaagc gccgagcgca aaaagcgccg caagaagggc ggcgcacgcg
      481 agagtctttc tcatcatcag tcgtggcctc ggccgtcgtt gaccttgtta gagctagcgg
      541 gaaggcttgc agtctagcac agacggggcg cgcggcgggc gcaggaagtt cacggccggg
      601 ccgcggtttg gttatactcg tccgggcatg aaatacctga tactgctcgg cggtattttc
      661 ctggtcgcgc tcgccgcgac cataatcttc atcatcgttt actactgggg gccgaagggc
      721 aagccgccgc gctcgtgagc ggccgggcgc ccggaggagg gggaagtgta ctcgtcgcag
      781 atcacgcgcg ccaaccctac ctgcgtcata ttcctgctcg accagtccgg ctcgatggcc
      841 gaccccttcg gcggcgacga gcacacgcga aaggccgact tcgtcgcgcg cgtcgtcaac
      901 aacgccttgc acgacctcgt catacgctgc acgaagaccg aggaggtcag gaactactat
      961 tacgtctccg tcatcggcta cggccgggcg gtcggcaccg cgctctcggg cgcgctctca
     1021 gaccgcccgc tcgcgcccat agccgacata gccgacaacc ccgcgcgcat cgagtcgggc
     1081 taccgccgcg tgccggacgg cgcgggcggc ttcgtcgaaa tgccggtgcg ttaccccgtc
     1141 tgggtctatc cgcacgccga cggcgggacg cccatgtgcc acgcgctcgc gcaggcgcgc
     1201 gaggttctgc accgctggct cgcgcaacac ccgcgcggct tccccccgac ggtgctgcac
     1261 ctgacggacg gcgagtcggg cgacggcgac cctacgcctc tgggcgagga gataatgtcg
     1321 ctcggcacgg acgacggccg tgtgctcctc ttcaactgcc atgtctcttc tcggcgctcg
     1381 cgcaaggtcg agtacccctc ggacgactcc gcgctcactg acggcctcgc gcgcgccctc
     1441 ttccagattt ccagcccgct gcccgagccc ttccgcgccg ccgcacagca gctaggcgtc
     1501 tccgtcaccg aaggctcgcg cggcttcgtc ttcaacgcag acccctcgtc cgtcgtgcag
     1561 ttctacgaga taggcactag cctgacgggc atggccccgc acatctggat ggacgagcaa
     1621 gaccgctgat gcccgcccga catccacggc tcagcttcac gaaattcctg ctgccgaagg
     1681 agggcgcccg agccgacgag tgcgaagacg ccatcggcgc cgacacgtcc gcgctcaggt
     1741 tcgccgtcgc agacggggcg accgaggcgt tcgactccgg cagttgggcg cgctctctgg
     1801 ccgaaggctg ggccgcgccc gcgggccccg cgccgggcgc cgagagcctc gggcgctggg
     1861 cggcggccga gggcgcgcgg ctgcacgaag cttgggaagg gaaggagctc ccctggtacg
     1921 cggaggagaa gaggcgcgcg ggctccttcg cggccttcgt cgggctggcc ttcgaggtcg
     1981 gagaagacct ggctttgcgc ttccgcgcgg tcgcgctcgg cgactcgtgc ctcttccacc
     2041 tgcgcggcgg tgagttgctc gcggccgtgc cggtctcgcg gccggaggac tttaactccg
     2101 cccccgtgct actcccttcg cgcgaggatt tgcgggatgc ggccgtggcg cgcgccgtcg
     2161 cgctcgaagg cgaggcccgg gcgggcgacc tcttcctgct cgcgtcggac gcggcggccg
     2221 cgtggttcct ctctgcgtgg ggggggcgcc cgactctgct ggaaaggttt gattctttgc
     2281 tcgccgcgtc ggaaaatgaa gcgctcgccg cgctgctgcg ggccgaacgg agcgagggca
     2341 ggctcaagga cgacgacgtt gccgttctga gaatcgtcgt cgggtgaagt tctcaaaggc
     2401 atgtcgagcc tcacgacaaa tttctggccg tcggcgaggg ctttcgcgga ggccgtgcaa
     2461 tgcccggccg tctgcttcgc cgagccgcag cttcgcgcga tgctcccggc cgttgaccgc
     2521 ctcggcatgc cgctcgtaac gtcggggcag ttcgcctacg tcttcaagct caactcgccg
     2581 gacggcgctc agtcgctcgc cgtgcgctgc ttccgcggct tcctcggcga ccgggaggtg
     2641 cgctaccgcg ccattgacgc gcacctgaac gcatgccgac tacctgcgct cccgcgcttc
     2701 aaatacctgc cggccggggc gctcgtctct ggccggcgct tccccgtcct cctgatggag
     2761 tgggtcgcgg ggcctacgct cgacgtttac atgggcgagg tcgtaggccg ccgcgaagtc
     2821 ctgctccacc tcgcggacga gtggctgaag ctcatggagt cgctgcgcgc ggccggtgtg
     2881 gcgcacggcg accttcagca cggcaacgtt atcgtggagc gcgggcggct acgactggtt
     2941 gacctcgacg gcatgttcgt cccggcgctc gcaggtttgc agtctagcga ggtcgggcac
     3001 cagcactacc agcacccctc gcgcggcgcc gacttcttct cgcgcgaggt tgacaacttc
     3061 tccgcgctcg tcatctacct gtcgctcctc gcgctcgccg agcggccgtc gctgtgggcc
     3121 gagcaccatg acgagaacct catcttcacg cgcgccgact tcgccgagcc caactcttcg
     3181 ccactcttcg ccaaagtgcg cgagataggg gcggagcacg cgcgcctcgc cgacgtgctc
     3241 gccgaggcag cgaagtcccc gcccgaggag acgccgtggg ttttagacct cgcgcacgtg
     3301 agctcgcggc tgccggcgtg gatgacggcg ccggccgagg tcgaggtggg cggccgcacg
     3361 cgcgaggtgg cgcgggcgca ggtgaaggtc gaagaggtgc cgggcgtctg gtcgcgcggg
     3421 cgcgagaggc gcacggcctc cgtggtcact tccaacacgg tgcagaccct cttcggcgcg
     3481 aagccgccct ccgccgtcgc ggcgcgcgac ccctctgaca tctacggcaa cacgctcttc
     3541 tacaccgtaa gctccgtggg gaacacctac gcttacgtct ggtggatacc cgtccacaac
     3601 ctgatactcg aagacgtgtg ggcgtcgagc tacctgacgg gcgcggccgg gatgctctgc
     3661 tcgctcatgc tcttcgtcgc ggccttcctg ctctacggga tattccgcgc cgtctatctg
     3721 gcggagaccg gctcgccgca ggcgcccgtc agcgtcatgc cgcacgtgct cgcggggacg
     3781 acggccgccg ccgccgcagg ctcgcagccc atcttcgcct ccgctcagtc ggtgctgccc
     3841 ccgccgcagg cggtcgccgc gccgccgcgc cccgtcgtcg gtaaccgcag cctccaaatc
     3901 taccacctcc cggcgtgcgc ctgggccggc aagatagccc cgcgcaacct cgcggagttc
     3961 gactcgcccg cctcggcggc taacgccggc taccgcccct gccgcgtctg cgcgccgtaa
     4021 gcgcccaccc cttctatcct tccgggttga caaggcggtc gcgcgcgggc aaccttctcg
     4081 tcacgtattc aaatccgttc ggcaagggtt cgtgaggctt gggggcatcc gagacaggcg
     4141 cgcgcgacgg cgggcgcgag cagggggcgg gctacttcga gctgctgcgg ggcaaccggg
     4201 acttccggct gatgtggctc gggcaggtcg tgagtcagtt gggcgattgg ttcaacacca
     4261 tcgcgctctt caccctcacg ctcgacctga cgggctcggg gcgcgccgtc gcgctcgtcc
     4321 tcgtcacgcg cttcctgccg agcgtcgtgc tcggcccgct ctcgggcgtc gtcgcagacc
     4381 gcttcaaccg ccgccgcgtg atgatcttga gcgacgtgct gcgcgccgtc gtcgtgctcg
     4441 gcttcctgct catacgccgc cccgagcacg tctggatgat ttacgcgctg acggtcgcgc
     4501 agctcgcgct ctccgccttc ttcgagcccg cgcgctcggc cgccatcccc tcaatcgtct
     4561 cggggcgcga gctggtctcg gccaacgcca tctcggccgt cacgtggtca acgatgctaa
     4621 cactcggcgc ggcgctgggc ggccccgtca cgggatggtt cggcaccgac gcggccttcg
     4681 tcattgactc gctcacctac ctcgtctcgg cgctgctcgt cgcgagcgtg cgcctgccgc
     4741 cccgggccga gaggccgaag acgaaactga ccctgagcaa ggcggtcggc ctaaccgaca
     4801 cgctcgaagg cataagctac gtccgcaacc ggccgcgcgt gctggcggtg ctgatggtga
     4861 agcccgcatg ggggttgggc ggcgggatac tgacgctgct gcccgtcttc ggcgagaagg
     4921 tcttcgccgt gggagggagc gcggccgtcg gcatgagcgt gctctacgcg gcgcgcggcg
     4981 tggggacggc tgtcggcccc gtgctcgcgc gtcgcttcgg cggcgagacg cgcgagagga
     5041 tggagcgcgc aatcggcctc tcgttctttc tggccggtgc gttctacgcc gccttcggcg
     5101 cctcgcagag cttcgcgctc gcgctcctgt ttttagccgt cgcgcacgcg ggcgggagca
     5161 cgctctgggt ctattccacc gtgcttttgc aggcgaacgt ggaggacgag ttccgcggcc
     5221 gcgtcttcgc cgccgagctg atgcttctga cgctgacgat ggccgcgtcg aactacgtga
     5281 cgggcgaggc gctcgaccgc ttcggctact cgccgcgcgc cgtgtgcgta gccaccggcg
     5341 tcttcttcac tctgccgggg ctgctctggc tcctgacccg gcggctttgg gacagggagg
     5401 ctcgggcgtg agagggcgcg ccgccggcta ctggcgcttc gactcacgct ccctcgccgc
     5461 cgcgctcgac gtggacgaag gcgttctgcg gctgaagctc cacggcgcgg tcgaagtcgg
     5521 ccagggcggc gtctgagtcg ccgcgcttgc tgcgaatctg cccgcggccg gcgtaggcgc
     5581 ccgcgacgtt cggcaggtac tcggcctcct cggggctccg cggccggccc ggctttcgcc
     5641 cgcaacagtt tttacttaaa ctcggcggtg cctttatgaa gctcaaagtg ggggtgatgg
     5701 ggtcggcggg cgacacgctg ccggagggcg cggcggccga gctgcgtgct aaggccgagg
     5761 ggctgggccg ggcgctcgcg cggcgtgact gcgtcgtgct gacgggcggg acgacgggac
     5821 tgccctacgc cgtcggcggc gcggcgcacg acgccggcgc gctgcacgtc ggcgtgtcgc
     5881 cagccgccga cgcgcgcgag cacgaggggc ggtacgggct gccgctcgac cgctgcggcg
     5941 tgatgatcta cacgggcttc gggctgaagg gccggaacgt cgtgctggtg cgctcgtgcg
     6001 acatcgtgct cgtcgtgcgc ggcgcgatgg gggccttgaa cgagttcaca atcgcgcacg
     6061 acgaggggcg cgtggtcggc tgtttgacgg gcacgggcgg cgtcgccgac gaggccgagc
     6121 ggttgatgaa ggccctgccg aagaagacgc gcgccgtcgt ccacttcgac ccggagccgg
     6181 agcgcctgct agacctctgc atagattctt tcctcgccgg ccgaaagaat tcccagccgt
     6241 gagctacgag atgactaacg tggtcgaggc cgtgcgagcc gcagcggagt tggcggccgg
     6301 cgacttcgac agcccggagt gggcgctcgc gcggcccgcg cacctggcgc gctactggtc
     6361 gggcgagccc gcgcccgaag gtaggcgcgc ggaggcgcgc ctgctctgga cggcggaggc
     6421 cctcgtcgct cgcttcgact gccggcagac ggagccgctc gtcacgagcc ccgccccgcg
     6481 actcgaccag aagaccatcg gcctttggga gcgcgacgtg tgcgagctgt tcgtcacgcc
     6541 cgagcagggc gcggtcggcc gctacttcga gttcgaggcg gcgcccacgg gcgagtggct
//
LOCUS       DASPKR010000552         2889 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_82597, whole genome shotgun sequence.
ACCESSION   DASPKR010000552 DASPKR010000000
VERSION     DASPKR010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2889)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2889
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82597"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            94..807
                     /locus_tag="VD968_14945"
     CDS             94..807
                     /locus_tag="VD968_14945"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE15738.1"
                     /translation="MRLGLRGAPALAEESDAVRDCALAAMTGARTHLAHVSTRGAVEA
                     VRRAKADGISVTCEVTPHHFTLTDEACEGYDTNTKMSPPLRSREHLEAVIAAIADGTV
                     DAVATDHAPHHSDEKALEFDHAPFGIAGLETAVALALDRLVNTGVIGLERLVELFSTG
                     PARVFDLEGRGTLRAGAWGDVTLLDPALRWRFDASRSKSKSRNTPFDGWEFQGAAVAT
                     VVAGRVVFRRGTESAAAGG"
     gene            complement(1008..1724)
                     /locus_tag="VD968_14950"
     CDS             complement(1008..1724)
                     /locus_tag="VD968_14950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15739.1"
                     /translation="MMTPRSRRLAQSATSLLILFAIVLGAAAPTFAQRRRARRTTRRA
                     ATPAVRYYTVPADTVIRVRMDSQLSSKTARVGDRFSTSVTEPVYGGESGVEVIPVGSK
                     IWGRVSSLKRAGRRSPGTITVAFNQVQLPTGARHTINGSLTSLQADDVNADNEGTVEG
                     RGNRKRDAVFIGGGAATGAIIGAIAGGGKGAAIGAILGGGLGTGARVYEREEEAEVKS
                     GTEFGVILNRAVSLSEYRRQ"
     gene            2173..2850
                     /locus_tag="VD968_14955"
     CDS             2173..2850
                     /locus_tag="VD968_14955"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF009668.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA];
                     GO_process: GO:0098869 - cellular oxidant detoxification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HYE15740.1"
                     /translation="MSTAATAQDSPISMPRINDPAPDFEAKSTQGVLKLSDYKGRWVV
                     LFSHPADFTPVCTTEFVEFARRSEEFKSRGAQLVGLSVDSVPAHIAWIRNIEGHFGVK
                     IDFPVVADLDTKVAQKYGLIHPGASETATVRAVFIIDPQQKVRALIYYPMSCGRNIDE
                     IVRALDALQTADENACATPANWRKGEKVVVPPPQTIADAQKRMEPEFQSANEVTDWYL
                     SKRELGK"
BASE COUNT          458 a          991 c          975 g          465 t
ORIGIN      
        1 actcggagct agcggcgacg gcggcgcgga gcggctctgg cgcgggctcc gtctcggcct
       61 gcggcggcgt cgtgggcgag gcggtcgtcg tctctgcggc tcggccttcg cggcgcaccg
      121 gcgctcgccg aggagtcgga cgccgtgcgc gactgcgcgc tcgccgcgat gacgggcgcg
      181 cgcacccacc tcgcgcacgt ctctacgcgc ggcgccgtcg aggccgtcag gcgcgcgaag
      241 gcggacggca tcagtgtcac ctgcgaagtc accccgcacc acttcacgct gaccgacgag
      301 gcgtgcgagg gctacgacac caacacgaag atgagcccgc cgctgcggag ccgcgaacac
      361 ctagaagccg tcatcgccgc gatagccgac ggcaccgttg acgccgtcgc cacggatcac
      421 gcgccgcacc actcggacga gaaggcgctc gagttcgacc acgcgccttt cggcatcgcg
      481 ggccttgaga ccgccgtcgc gctcgcgctc gaccgtctcg tcaacacggg cgtcatcggc
      541 ctggagcgcc tggtagagct tttctcgaca ggcccggcgc gcgtcttcga cctcgaaggg
      601 cgcgggactc tgcgcgcggg cgcgtggggc gacgtgacgc tgctcgaccc ggcgctgcgc
      661 tggaggttcg acgcctcgcg ctcgaagtcg aagagccgca atacgccctt cgacggctgg
      721 gagttccagg gggcggcagt cgcgaccgtc gtcgcgggcc gcgtggtctt ccgcagaggg
      781 actgaatcgg ccgcggccgg cgggtaaact ttccgtcgct gaaaaagaag aggcacggcg
      841 cgctctcccc ttcgcgccgt gcctctcctg ttgcggccgc tcacttacgc cttgacaggg
      901 gcggccgaac ccgtttgatt ctttcgggag ccggcccgcg ctctcccctt cgcgggccgg
      961 ccccctcagt gcggcggcct gtcgggggcc gccgaacccg ttaaaactta ctgacgcctg
     1021 tactccgaca gggagaccgc acggttgagt atgacgccga actcggtgcc ggacttcacc
     1081 tctgcctcct cctcgcgctc gtaaaccctc gcgcccgtgc cgagcccgcc gccgagtatg
     1141 gcgccgatgg ccgccccctt gccgcccccg gcgatggcgc cgatgatcgc gcccgtcgcc
     1201 gcgccgccgc ctatgaagac cgcgtcgcgc ttgcggttac ctcggccttc gaccgtgcct
     1261 tcgttgtcgg cgttcacgtc gtcggcctgt aggctcgtga gcgagccgtt aatcgtgtgg
     1321 cgcgcgcctg tgggcaactg cacctggttg aaggcgacgg ttatcgtgcc gggcgagcgg
     1381 cgccccgcgc gcttgaggga gcttacgcgc ccccagattt tgctgccgac ggggatgact
     1441 tcgacgccgc tctcgccgcc gtaaaccggc tcggtgacgc tcgtcgagaa gcggtcgccg
     1501 acgcgcgccg tcttcgagct gagctgcgag tccatgcgca cgcgaatcac cgtgtcggcc
     1561 ggcaccgtgt agtagcggac ggccggcgtg gcagcgcgcc gggtggtccg gcgtgcgcgc
     1621 ctgcgctgcg cgaaggtcgg ggcggcggcc ccgaggacga ttgcgaagag gatcagtaaa
     1681 ctcgttgcgc tttgcgcgag gcgtctgcta cgtggggtca tcatctgcgt cctcctaagt
     1741 tggctttgtc gcccgctccc tccgattaag tctcgccggc gcgagcgccg ccgccgcact
     1801 tcgggttagt gcaacggccg tgccacgtcg cggcgcaggg gcgaaggcgt ttctgcgctt
     1861 gtctttagcc gatttacgct cgaaaggcca gcgaagaatg cgggcaacct ttcggggcgt
     1921 aagcgaaagg cggcaggccc gcacgatttg gtgcggggcc tgcgagccac tgcgccattc
     1981 cgccgcggca ctttccagca ccccggccgg aagttgaaat gctggcgttt ttgtgtaagc
     2041 tttgcgctaa cggcgaacgg gtaaaaattt caaggcggaa ggcgagccga gcgcgcgcga
     2101 cgggtcattc ttcgagagac taaaattcca ctgaccttcg ataaatcacc cctgaaaaaa
     2161 gaggagctga acatgagcac agcagcaacc gcacaggatt ccccgatctc gatgcctcgc
     2221 atcaacgacc cagcccccga cttcgaggcg aagtcaacgc aaggggtgct gaaactctcg
     2281 gactacaagg gcaggtgggt cgtgctcttc tcgcacccgg ccgacttcac gcccgtctgc
     2341 acgaccgagt tcgtcgagtt cgcccgccgc tccgaagagt tcaagagccg cggcgcgcag
     2401 ctcgtcggcc tgtcggtgga ctcagtccct gcgcacatcg cctggataag gaacatcgag
     2461 ggccacttcg gcgtcaagat tgacttcccc gtggtggcag acctcgacac gaaggtcgcg
     2521 cagaagtacg ggctcataca ccccggcgcg tccgagacgg ccacggtgcg cgccgtcttc
     2581 atcattgacc cgcagcagaa ggtccgcgcc ctcatctact acccgatgtc gtgcgggcgc
     2641 aacatagacg agatcgtccg cgcgctcgac gcgctccaga ccgccgacga gaacgcctgc
     2701 gccacgccgg ccaactggcg gaagggcgag aaggtggtgg tgccgccgcc gcagaccatt
     2761 gccgacgcgc agaagcggat ggagcccgag ttccagtccg ccaacgaggt cacagactgg
     2821 tacttgtcca agcgcgagct gggcaagtga ggggctgcgg gcgcacgggc cgcgcgtgca
     2881 agggggacg
//
LOCUS       DASPKR010000553         3755 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_213111, whole genome shotgun sequence.
ACCESSION   DASPKR010000553 DASPKR010000000
VERSION     DASPKR010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3755)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3755
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213111"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..757
                     /locus_tag="VD968_14960"
     CDS             <1..757
                     /locus_tag="VD968_14960"
                     /inference="COORDINATES: protein motif:HMM:NF039315.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HYE15741.1"
                     /translation="PRGLTTNSMPHGTAAFQIDFDFVAHRLVIQTSDGGERVIKLEPR
                     AVADFYAEFTDALSSLGLRVKIWPTPVEVASPVPFDRDREHASYDSEYVRRFHRALLQ
                     SERIFQQFRSGFQGKCSPVHFFWGSFDLAVTRFSGREAPPHPGAPGVADSVTREAYSH
                     EVSSAGFWPGGPEGTDALFYSYAYPEPEGFKSHHVGPASALYSEELREFVLPYEAVRT
                     ADDPDAALLEFLQTTYEAAAEHARWDRAALERR"
     gene            complement(820..1143)
                     /locus_tag="VD968_14965"
     CDS             complement(820..1143)
                     /locus_tag="VD968_14965"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: protein motif:HMM:NF013494.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HYE15742.1"
                     /translation="MERLAERKCGPCHGGVPRLEGEEVVRLLGELDGWEVVGGHHLSK
                     QYRFTNFAEALEFVNRVGRVAEAEGHHPDITFGWGYARVEIYTHAIGGLSENDFILAA
                     KVDEI"
     gene            1263..2498
                     /locus_tag="VD968_14970"
     CDS             1263..2498
                     /locus_tag="VD968_14970"
                     /inference="COORDINATES: protein motif:HMM:NF018004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1015 family protein"
                     /protein_id="HYE15743.1"
                     /translation="MAAIYPFRALRPPSDRVAEVAAPPYDVVSTEEARQLASGKPLSF
                     LHVSRPEIDLPEGADLYADETYAKAKENFRKLVESAPLEEEREPSLYVYRLRMGGHTQ
                     TGVAACASVDEYDRDLIRKHEKTRPDKENDRTRHLLELRAQTGPVFLTYRADRRIDAL
                     VEAETTAEPLYDFTAEDGVRHTVWRASAAEQLARCFAEVPLLYIADGHHRAASASRAR
                     AALRDQNPSHAGGEEYNRFLAVIFPENQMQILPYHRVVKDLNGLSSEEFLAEVGRHFN
                     LSGDARREGPGKSGHWHMYLDGKWFGLTLKADSARTLSDDPTSTLDVSLLQDNLLDPV
                     LGIKDVRTDKRIDFVGGIRGTAELERLVDEGRARVAFALYPTSIDDLLRVSDAGAVMP
                     PKSTWFEPKLRDGILIHTV"
     gene            2617..3159
                     /locus_tag="VD968_14975"
     CDS             2617..3159
                     /locus_tag="VD968_14975"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE15744.1"
                     /translation="MKVETERLLMRLHEPGDADGHLGVTGDPEFRAHFPETYRPTRDK
                     VLFALGRFVEHWHQFGYGVWCLELKGEAGVLGYCGLRRLPQTEEVELLYGIRRAYWGR
                     GLATEAARAALRFGFEEKGFARVMAVTTPANRPSRRVLEKCGMRYERDAVYFDMLCAY
                     YAIERGEFRADASSRYALRD"
     gene            3195..>3755
                     /locus_tag="VD968_14980"
     CDS             3195..>3755
                     /locus_tag="VD968_14980"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYE15745.1"
                     /translation="MRVLIADKFEQSGRDGLEAAGCDYSYQPDVKDETLVEAVRSYRP
                     DALVVRSTKVGEPVMEAGALKLIVRAGAGYNTIDVAAASRRGIYVSNCPGKNSVAVAE
                     LALALILALDRRVADNVAELRAGRWNKKEFSKARGLLGRTLGLIGTGQIGQEVITRAR
                     AFGMRVVAWSRSLTQERAIVLGVERVE"
BASE COUNT          624 a         1358 c         1180 g          593 t
ORIGIN      
        1 gccgcgggga cttaccacca actcgatgcc gcacggcacc gccgccttcc agattgactt
       61 cgacttcgtc gcgcaccgcc tagtcatcca gacgagcgat ggcggcgagc gcgtcattaa
      121 acttgagccc cgcgccgtcg cggacttcta cgcggagttc accgacgcgc tctcctccct
      181 cggcctccgc gtgaaaatct ggccgacgcc cgtagaggtc gcctcgcccg tccccttcga
      241 ccgggacagg gagcacgcgt cctacgattc tgaatacgtg cgccgcttcc accgcgctct
      301 cttgcagtcc gagcgcatct tccagcagtt ccgctcgggc ttccagggca agtgcagccc
      361 cgtccacttc ttctggggca gcttcgacct ggcggtcacg cgattctcgg ggcgcgaggc
      421 gccgccgcac cccggcgcgc ccggcgtcgc agactccgtc acgcgcgagg cttactcgca
      481 cgaggtgtcg agcgccggct tctggcccgg cggccccgaa ggcaccgacg ccctcttcta
      541 ctcctacgcc taccccgagc ccgagggctt caagtcgcac cacgtcggcc ccgcctctgc
      601 cctctacagc gaagaactgc gcgagttcgt cctcccttac gaggccgtcc gcaccgccga
      661 cgaccccgac gccgcgctcc tcgaattcct tcaaaccacc tacgaggccg ccgccgagca
      721 cgcacgctgg gacagggccg cgctggaacg aaggtgacga cgagaaaagg ctcgcccatc
      781 cgatgatagg cgagcccgtc gtttcagctt ccttccggcc tagatttcgt caaccttcgc
      841 ggcgagtatg aagtcgttct cgctaaggcc cccgatggcg tgcgtgtaaa tctcgacgcg
      901 ggcgtagccc cagccgaagg ttatgtcggg gtggtggccc tcggcctcgg cgacgcggcc
      961 gacgcggttg acgaactcga gcgcctctgc gaagttcgtg aacctgtatt gcttcgacag
     1021 gtgatggccg ccgacgacct cccagccgtc aagctcgccg agcagcctca cgacctcctc
     1081 gccttcgagc ctcggcacgc cgccgtggca cggcccacac ttgcgctcag ccagtctctc
     1141 catccgacct ctcctcctcc ctccgcggcc gcttggcaaa aggggcgccg agtcgttaag
     1201 cttacgctct aaagttccac acccgcaatt ctccagaagc ccgaaggagg cgataaccag
     1261 ccgtggccgc catctaccct ttccgcgcac taagaccgcc cagcgaccgc gtcgcggaag
     1321 tcgccgcgcc cccctacgac gtggtcagca cggaggaggc gcgccagctc gcctccggca
     1381 agcccctgag cttcctgcac gtctcgcgcc ccgagattga cctgcccgag ggcgcagacc
     1441 tctacgccga cgagacctac gcgaaggcca aagagaactt caggaaactc gtcgagagcg
     1501 ccccgctcga agaggagcgc gagccgagcc tctacgtcta tcgcctccgt atgggcggcc
     1561 acacgcagac gggcgtggcc gcgtgcgctt ccgttgacga gtacgaccga gacctcatac
     1621 gcaagcacga gaagacgcgc cccgacaagg agaacgaccg cacgcgccac ctgctcgagc
     1681 ttcgcgcgca gaccgggccc gtgtttttga cttaccgcgc cgaccgccgc attgacgcgc
     1741 tcgtcgaggc ggagacgacc gcggagccgc tctacgactt cacggccgag gacggcgtgc
     1801 gccacacggt ctggcgcgct tcggccgcgg aacagctcgc gcgctgcttc gccgaagtcc
     1861 cgctgctcta catcgccgac gggcaccacc gcgccgcgag cgccagccgc gcgcgcgccg
     1921 ccctgcgcga ccagaacccc tcgcacgcgg gcggggagga gtacaaccgc ttcctcgccg
     1981 tcatcttccc cgagaaccag atgcagattc tcccctacca ccgcgtcgtg aaagacctga
     2041 acggcctctc gtcggaagag ttcctggcgg aggttggccg gcacttcaac ctgagcggcg
     2101 acgcgcggcg cgaaggcccc ggcaagagcg gccactggca catgtacctg gacggcaaat
     2161 ggttcggcct tacgctcaag gccgactcgg cgcgcacgct ctccgacgac ccgacctcga
     2221 ctctcgacgt gagcctcctt caggacaacc tgcttgaccc cgtcctcggc ataaaggacg
     2281 tgcgcacgga caagcgcata gacttcgtcg gcggcatacg aggcaccgcc gagttggagc
     2341 ggctggttga cgagggccgc gcgcgtgtgg ccttcgcgct ctacccgacc tcgattgacg
     2401 acctcctgcg cgtctcggac gccggggccg tcatgccgcc caagtcaacc tggttcgagc
     2461 ccaagctgcg cgacggcatc ctgattcaca cggtttagaa gaagctgtcg gctgtaagct
     2521 ctcagcttcg cccgtatcgc agcgattggc ctccgacgtg aaccccgggc ggcgggggag
     2581 taaaagctga aagctgactg cttattgccg gcagctatga aagtcgagac cgagagactg
     2641 ctgatgcgcc tgcacgagcc gggcgacgcc gacggccact tgggcgtgac cggtgacccc
     2701 gagttccgcg cgcacttccc cgagacctac cggccgacgc gcgacaaggt gctcttcgcg
     2761 ttgggccgct tcgtggagca ctggcaccag ttcggctacg gcgtgtggtg tctggaactg
     2821 aagggcgagg cgggcgtgct cggctactgc ggcctgcgcc ggctcccgca gaccgaggag
     2881 gtcgagctgc tctacggcat acgccgggcg tactggggcc gcgggcttgc gaccgaggcg
     2941 gcgcgcgccg ccctgcgctt cggcttcgag gagaagggct tcgcacgggt catggcggtc
     3001 acgacgcccg ccaaccggcc ctcgcgccgc gtgctcgaga agtgcgggat gcgctacgag
     3061 cgcgacgccg tctatttcga catgctgtgc gcctactacg ccatcgagcg cggagagttc
     3121 cgcgccgacg cgtcttcgcg ctacgccctg cgtgactaaa aattcctgga gcgccctggg
     3181 aggggacagt ttttatgcgc gtgctcatcg cagacaagtt cgagcagtcg ggccgcgacg
     3241 gcctcgaagc cgccggctgc gactactcct accagccgga cgtgaaggac gagactctgg
     3301 tcgaggccgt ccgctcttac cgccccgacg ctttggtcgt gcgctcgacc aaagtgggcg
     3361 agcccgtcat ggaggccggc gcgctcaagc tcattgtgcg cgcgggcgcg ggctacaaca
     3421 cgattgacgt ggccgctgcc tcgcgccgag gcatctacgt ctcgaactgc cccggcaaaa
     3481 actccgtggc cgtcgccgag cttgcgctcg cgctcatcct cgcgctcgac cgccgggtag
     3541 ccgacaacgt cgcggaactg cgcgcgggcc gctggaacaa gaaagaattc tcgaaggcgc
     3601 gcgggcttct cggccgcacg ctcggcctca tcggcacggg acagatcggg caggaggtca
     3661 tcacgcgcgc gcgggcgttc ggcatgcgcg tcgtcgcctg gagccggagc ctgacgcagg
     3721 agcgtgcgat agtcctcggc gtcgagcgcg ttgag
//
LOCUS       DASPKR010000554         4879 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_861397, whole genome shotgun sequence.
ACCESSION   DASPKR010000554 DASPKR010000000
VERSION     DASPKR010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4879)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4879)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4879
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_861397"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..615)
                     /locus_tag="VD968_14985"
     CDS             complement(<1..615)
                     /locus_tag="VD968_14985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15746.1"
                     /translation="MSPTDYRREFAAYTSAVERARFERHAGLAERPDLRPVEERYADL
                     WSRGAVEDLARALEEAPEQFETERAGLRALLGAARLGRAEAEAREVTEELGRCEGAGG
                     VEWGGGRVGAGDVPGMLGRETDAARRRELWRRWLDALRPCDDLRAARLETLRDAARDL
                     GFDDFGALRADSTRADAARLAAEAELFLARTAPTYSAHLSRWAAL"
     gene            complement(996..2369)
                     /gene="glmM"
                     /locus_tag="VD968_14990"
     CDS             complement(996..2369)
                     /gene="glmM"
                     /locus_tag="VD968_14990"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR01455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HYE15747.1"
                     /translation="MTERKKLFGTDGMRGAAGKFPLDAATVQTAGRSLARRLADKLGR
                     EPRLVTGRDTRESGGWIEAAFAAGARESGAAVESAGVITTPGVAYLARSLPADAGVVI
                     SASHNPFDDNGIKIFAPTGRKLDEETERLIEADIYADAGRAAAGVDESGAAGNERRAA
                     ELKSLYLDYLAGDVAGGLRLDGVTVVLDCANGASYRLAPALFQRLGARVVATSDAPDG
                     RNINRGCGSLHPEALQRRVVEERANLGVAYDGDADRALFVDARGRLVDGDATLWALAK
                     HMAERGELDGGRVVATVMSNVGLELALRSRGMELLRADVGDKYVLEMLEERGACLGGE
                     QSGHIIFPRVSLAGDGMITTLKLLAVMRETGRELHQLVEGFERFPQVLKNVRVREKLP
                     FDQVEEIARAGREVEGALGGRGRLLLRYSGTEPLARVMIEGQRQDEIEELAARLVSVI
                     ERNLGAS"
     gene            complement(2405..3373)
                     /locus_tag="VD968_14995"
     CDS             complement(2405..3373)
                     /locus_tag="VD968_14995"
                     /inference="COORDINATES: protein motif:HMM:NF019561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdaR family protein"
                     /protein_id="HYE15748.1"
                     /translation="MAFEFTKKRRGGGADGGVARRWLREFFLEDWTLKLMAFLITLGL
                     WYAVTAQRTPSTVRLRNVPLEFLLPENVEISNDPVEEVDVTLEGSQGKLAEINARNLV
                     ARADVTGLKPGDRVARLTDRNVTMDVPEGVRLLDITPRSVTLRLEPVVEREVTVEARF
                     EGQPPDGFVLRGVQVVPDRVRVRGPESHVQAIEKAYTETISLEGRRESLQLPQTAVDI
                     PDRKVVPLDATVNVRVEMAEEQSERRIANVQVRAASGAQVSPQTVSVTLRGPRAIVES
                     LRPEDVRVVVETGDDGSPVPRLSLPPAATGRVQLLSTTPSELTVNR"
     gene            complement(3375..4256)
                     /gene="cdaA"
                     /locus_tag="VD968_15000"
     CDS             complement(3375..4256)
                     /gene="cdaA"
                     /locus_tag="VD968_15000"
                     /EC_number="2.7.7.85"
                     /inference="COORDINATES: protein motif:HMM:TIGR00159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004016 - adenylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase CdaA"
                     /protein_id="HYE15749.1"
                     /translation="MLLQTYNHYLERLREPRNWADILLVFLLVYALLKLIRGTRAAPM
                     AAGIAGLALLYWTAARYDLATLEFILRPAPLYVGVAVIVLFQNEIRQALISFGNRFRV
                     PFLIRHRGQFGEGAYDEIVLAATTLASTKTGALIVVERGVNLRNVIEGGVQLDADLSY
                     DLLVTIFNPATPLHDGAVVVRGHRVAAAACFLPLTLNPLLSKDLGTRHRAAIGITEDT
                     DAVAVVVSEETGIISFVQGGQIRRNLDATRLRSAIISAVEPAAAAREAEAGGERIAEA
                     ETLGDADVRGQRLGASD"
     gene            complement(4360..4737)
                     /locus_tag="VD968_15005"
     CDS             complement(4360..4737)
                     /locus_tag="VD968_15005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15750.1"
                     /translation="MVLGALVGTVLAFVGIYLTDHHTGPGGGAHRDGVASIAIGPVLG
                     VVAFVLARFSRGLLPGEAANPDARERIRKAMPKRPNVVEVIEPLTMHFAPGQILINAH
                     VNFRDDRATERAVAGEPMPRHVG"
BASE COUNT          744 a         1655 c         1686 g          794 t
ORIGIN      
        1 caacgcggcc cagcgcgaga ggtgcgcgga atacgtgggc gcggttcttg ccagaaagag
       61 ttcggcttcg gcggcgagcc gcgcggcgtc ggcgcgcgtc gagtcagcgc ggagagcgcc
      121 gaaatcgtcg aagcctagat cgcgcgccgc gtcgcgcaac gtttcgagcc gggccgcgcg
      181 caggtcgtcg caggggcgta aagcgtcgag ccaacggcgc cacagctctc gcctgcgcgc
      241 cgcgtcggtc tcgcgcccga gcatgcccgg cacatcgccg gcgcccaccc tcccgccgcc
      301 ccactcgacg ccgcccgccc cctcgcagcg cccgagctct tccgtcacct cgcgcgcttc
      361 cgcctctgcc cgcccgagcc gcgccgcgcc caagagtgcg cgcagccccg cgcgctccgt
      421 ctcgaactgc tccggcgcct cttccaacgc gcgcgcgagg tcttcgaccg ccccgcgcga
      481 ccacaggtct gcgtagcgct cctcgacggg ccgcaagtcc ggccgctcgg cgagccccgc
      541 gtggcgctcg aagcgcgccc gctcgacggc agaagtgtaa gctgcgaact cgcgtcggta
      601 gtcggtcggg ctcatttcgt gccgcaggcg cgctcggccc ggggctttgc acgcttcgct
      661 cttgctgttc ttaagggaat tccggccggc aggattctag cacgcgcgcc aaaagagaac
      721 gggcgcggca aacttgggga atgccgcgcc cattctaatt tgtggtcact gtcctcaccc
      781 cagcaaccac tgagacggat gatccaccaa ccgtctctct tgccccacaa tatacatcgc
      841 aacgctcatg ccatgcaagc ggaaatttaa cacctttcaa aaccccactt tttgttgggc
      901 ttttctatgt attgcaggac aacaaagttt ctcacggcgc cgcggcgtgt aagtcttaca
      961 ctggcggccg agtaaaaatt tcacgcccgc gtttttcaag acgcgccgag attacgctcg
     1021 atgacggaga cgagacgcgc ggcaagctcc tcgatctcgt cctgcctctg cccctctatc
     1081 atgacgcgcg cgagcggctc ggtgccggag tagcggagca ggagccgccc tcgcccgccg
     1141 agcgcgccct cgacctctct cccggcgcgc gcgatctctt cgacctggtc gaaggggagc
     1201 ttttcgcgca cgcggacgtt cttgagcacc tgcgggaagc gctcgaagcc ttccacaagc
     1261 tggtgcagct cgcggcccgt ctcgcgcatg acggcgagga gcttgagcgt cgtaatcatc
     1321 ccgtcgcccg cgaggctcac gcgcgggaag attatgtggc ccgactgctc tccgcccagg
     1381 cacgcgcccc gctcttcgag catttcgagc acgtatttgt cgcccacgtc tgcgcgcaga
     1441 agctccatgc cgcgcgagcg cagggccagt tcgagcccta cgttgctcat cacggtcgcg
     1501 acgacgcgcc cgccgtcgag ctcgcccctc tcggccatgt gcttcgccag agcccagagc
     1561 gtggcgtcgc cgtcgacgag gcggccgcgg gcgtccacga agagggcgcg gtcggcgtcg
     1621 ccgtcgtagg cgacgccgag gttcgcgcgc tcctcgacca cgcggcgctg caaggcttca
     1681 gggtggagcg agccgcagcc gcggttgatg ttgcggccgt ccggcgcgtc gctagtggcg
     1741 acgacgcgcg cgccgagccg ctggaagagc gcgggggcaa gccggtagga cgcgccgttg
     1801 gcgcagtcga gcacgacggt cacgccgtcg agccggaggc cgcccgcgac atcgcccgcg
     1861 aggtagtcga gatagagcga cttaagctcc gccgccctcc gctcgttccc cgcggcgccg
     1921 ctttcgtcaa cgccggccgc ggcacggccc gcgtcggcgt atatgtcagc ctcgatgagc
     1981 cgctccgtct cttcgtcgag cttgcggccc gtgggcgcga aaatcttaat gccgttatcg
     2041 tcgaagggat tgtgggaggc gctgatgaca accccggcgt ccgcgggcag agagcgcgcg
     2101 aggtaggcga cgcccggcgt ggttatcacg cccgcagact caacggccgc gcccgactcg
     2161 cgcgcgcccg cggcgaaggc tgcctctatc cagccgcccg actcgcgcgt gtcgcgcccc
     2221 gtcaccagtc gaggctcgcg gccgagcttg tcggcgagcc ggcgggcgag cgagcgccct
     2281 gccgtctgaa ccgtcgcggc gtcgagcggg aacttgcccg ccgcgccgcg catgccgtca
     2341 gtaccgaaga gttttttcct ctcagtcatc aaagccatca taacagaacc gcgggcggca
     2401 ctgattatct gttgacggtg agctcggagg gcgtggtgga gaggagctgt acgcggccgg
     2461 tggcggcggg cgggagcgag aggcgcggga cgggcgagcc gtcgtcgccg gtctcgacta
     2521 cgacgcgaac gtcctcgggg cgaagcgact cgacgatggc gcgcggcccc ctgagtgtga
     2581 cagagacggt ctgcggcgag acctgcgcgc cggaggccgc gcgcacctgt acgttcgcga
     2641 tgcgccgctc cgactgctcc tcggccatct cgacgcgcac attgaccgtc gcgtcgagcg
     2701 ggacgacctt gcggtcgggg atgtcaacgg ccgtctgcgg cagttgcagg ctctcgcggc
     2761 ggccttcgag cgaaatggtc tcggtataag ccttctcgat ggcctgcacg tggctctcgg
     2821 ggccgcgcac gcgcacgcgg tcgggcacga cctgcacgcc gcgcaggacg aagccgtcgg
     2881 gcggctggcc ctcgaagcgg gcctcgacgg tgacctcgcg ctcgacgacg ggctcaagcc
     2941 tgagggtcac gctgcgaggc gtgatgtcga gcaggcggac gccctcggga acgtccatcg
     3001 tgacgttcct gtccgtgagg cgcgctacgc ggtcgcccgg cttgaggccc gtcacgtcgg
     3061 cgcgcgcgac gaggttgcgc gcgtttatct cggcgagctt cccctggctg ccctcgagcg
     3121 tcacgtcaac ctcctcgacg gggtcgttgc ttatctcgac gttctcgggc agtaagaatt
     3181 cgagcgggac gttgcggagc ctgacggtcg agggcgtgcg ctgcgcggtg acggcgtacc
     3241 agaggccgag cgtgatgagg aaggccatga gcttgagcgt ccagtcttcg aggaagaact
     3301 cgcgcagcca gcggcgggcg acgccgccgt cggcaccgcc gccccgccgt tttttggtga
     3361 actcgaaggc catgtcagtc gctcgcgccg agcctctgcc ccctcacgtc cgcgtcgccc
     3421 aacgtctcgg cctctgcgat tctttcgccc cccgcctcgg cctcgcgcgc ggcggccgcg
     3481 ggctcgacgg ctgagatgat ggccgagcgc aggcgcgtgg cgtccaggtt gcgccgaatc
     3541 tgcccgccct gcacgaagga gattatgccc gtctcctcgg agacgacgac ggcgacggcg
     3601 tccgtgtcct ccgtgatgcc tatggcggcg cggtggcgcg tgccgaggtc tttcgagagc
     3661 agcgggttca gggtgagcgg caggaagcag gccgcggccg cgacgcggtg gccgcgcacg
     3721 acgacggcgc cgtcgtgcag gggcgtcgcc gggttgaaga tggtgacgag aaggtcgtag
     3781 ctcaaatcgg cgtcgagctg cacgccgccc tctatgacgt tgcgcaggtt gacgccgcgc
     3841 tcgacgacga tgagcgcgcc cgtcttcgtc gaggccagcg tcgtcgccgc cagcactatc
     3901 tcgtcgtagg cgccctcgcc gaactgcccg cggtggcgta tcaggaacgg gacgcggaag
     3961 cggttgccga aggagatgag cgcctggcga atttcgttct ggaagaggac gatgacggcg
     4021 acgccgacgt agaggggcgc gggccgcagt atgaactcga gcgtggcgag gtcgtagcgg
     4081 gcggcggtcc agtagagcag ggcgaggccg gctatccctg cggccatcgg ggcggcgcgc
     4141 gtgccgcgta tgagcttcag cagcgcgtaa accagcagga agaccagcag gatgtccgcc
     4201 cagttgcgcg gctcccggag cctttccaga tagtggttgt acgtctgaag aagcatcttt
     4261 cgaaattttc ggttttagat ttgcgatttg cgattccgtg ttccatcggg gtgactctcg
     4321 gccagatcaa aaatcacaaa tcacgaaccc gaaatcctgt cagccgacgt gccggggcat
     4381 cggctcgccc gccacggctc gctctgtcgc gcggtcgtcg cggaagttga cgtgcgcgtt
     4441 tatcagaatc tgcccgggcg caaagtgcat cgtcagtggc tctatgacct cgacgacgtt
     4501 cgggcgcttg ggcatggcct tgcgtatgcg ctctcgcgcg tccgggttgg cggcctcgcc
     4561 gggcaggagc ccgcgcgaga agcgcgccag cacgaaggcg acgaccccga gcaccggccc
     4621 gatggcgatg gaggcgacgc cgtcccggtg ggcgccgccg ccggggcctg tgtggtggtc
     4681 agtcaggtaa atgccgacga aggcgagcac ggtgcctacg agcgcgccga gcaccacgag
     4741 cgcctactga gcccccggct tgttagagtt acacgcctcc gcgccgatta tgctggaaaa
     4801 aggggcttga atcaatcctg tcgtggggga aggggttggg gctgagggtc aggcccggct
     4861 tttgcgacgg atgcggccg
//
LOCUS       DASPKR010000555         4774 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1894757, whole genome shotgun sequence.
ACCESSION   DASPKR010000555 DASPKR010000000
VERSION     DASPKR010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4774)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4774
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1894757"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2604)
                     /locus_tag="VD968_15010"
     CDS             complement(<1..2604)
                     /locus_tag="VD968_15010"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE15751.1"
                     /translation="MMRQLHGGKGRALHGAVLVCLFACAATITAQQSLGTLRGRVTDE
                     LGGVIVGATVTATDAAGVERSAVTDDEGRYVFSALAPGRYTVRINQPGFAAYENLGVE
                     ITAGRTDPLDIVLTVSIEQEEVTVIAEEGVGTDPESNAGAVVLRGEDLDALPDDPDDL
                     SEALQALAGPSVGAEGGADIYLDGFSGGRLPPKESIREIRINRNPFSAEYDRLGYGRV
                     EIFTKPGTDRFRGQAFFNFNDESLNSRAPFAPTRAPYQSRRYGGNISGPISAGRASFF
                     LDFERRETDDNEVVQAVVLDEDDPLLPAVPFSQTLLTPDRRTTFSPRLDYQISPTNTL
                     VARYSFERTSREGEGVGGFNLPERAYDVESREHTLRLTETAVINQKVINETRFQYSRD
                     SRQNEGGSFAPTLRVLDAFTAGGAQSGQSSNELDRVELQNYTSWAWGDHALKVGARLR
                     SAGVRDISRQNFAGTFTFTTLEQYRASLQGTARPTQFSVAGGEPEVSVRQTDFSPFIQ
                     DDWRVRPNLTLSAGLRYEAQANIDSALNFAPRLAFAWSPGAGGGGGGGARGQQTVIRG
                     GFGVFFDRFGENLLLQSERFNGTTQQQFLITEPPPEDTSGRAELARQLLARFPDVPTV
                     EELTAFRIPQTVRQLAPDLRTPYTMQTAISLERQLARNVTLSVSLIGARSLHVLRSRN
                     VNAPLTDGDGRPLRDSSGQLIRPNPLGGNLFQYESSGRFSQRQLIVNFNNRFSRSYSF
                     SVNYTLNRARGDAEGAGTFPVNQYDLTGEYGRSLQDIRHRFFFFGTINALPWGVRLNP
                     IVVANSGRPFNIVIGRDLNRDSLSTERPAFATDLARASVRLTPFGAFDIDPLPGQQII
                     PRNYGTGPAFFS"
     gene            complement(2695..3960)
                     /locus_tag="VD968_15015"
     CDS             complement(2695..3960)
                     /locus_tag="VD968_15015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15752.1"
                     /translation="MKRAFVLSALAAFALALPAWGQTAQAPAQHLVGEVTAVDAAAGR
                     FTVKTVAGESRTVAVDDKTTFRRLPPGETTLDKAERVTRADVQVGDRVLVPNGMSAGE
                     APVRQLIVMSGAGLAAQREREREERQRRTLVGRVAAVDAAAKQLTVFTRGREGQETVT
                     INAPAGARFLRYAADSARAGDARPGSFDEVKVGDQMRATGERSADGRSFAAEEILSGS
                     FTRVVGSVASVDAARGEVTVRNEQTGQTFTVATGQRTMLRRIPEEFAREMAARRQQAE
                     QRRAARAQSGGGQQGGRTEEEREQRRRERAEQRRADGEGAGDQGRGPGGGRRGGFGGG
                     NLQQALERMPAITLAELKKGDAVIVTATPGATPERVTAVALVTGDAEVLRSFGGRGGD
                     DPRGLSPGLPGDVMGGGTGNTGTTRDQPK"
     gene            complement(4347..>4774)
                     /locus_tag="VD968_15020"
     CDS             complement(4347..>4774)
                     /locus_tag="VD968_15020"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: protein motif:HMM:NF013045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HYE15753.1"
                     /translation="LSQHFRRRLVEKRYLAVVGGSVGAEEQVINAPVGREEGARPPWR
                     VLESGKQAETRLRVLERGRGRALVELEPVTGRTNQLRIHCAHAGHAIVGDRWYGGEPH
                     ARLCLHAARLAFHHPATNEWEEFSSPLPEEVASALGAIS"
BASE COUNT          674 a         1621 c         1697 g          782 t
ORIGIN      
        1 ggagaagaag gcggggcccg tgccgtagtt gcgcgggatt atttgctggc ccggcagggg
       61 gtctatgtcg aaagcgccga agggggtcag gcgcacgctg gcgcgcgcga ggtctgtggc
      121 gaaggcgggc cgctcggtgg agagcgagtc gcggttgagg tctcggccga tgacgatgtt
      181 gaaggggcgg ccggagttgg cgacgacaat cgggttcagg cgtacgcccc acggcagcgc
      241 gtttatcgtg ccgaagaaga agaagcggtg gcgtatgtcc tgtagagagc ggccgtactc
      301 gcccgtcaga tcgtactggt tgacggggaa cgtgccggcc ccttcggcgt cgccgcgcgc
      361 gcggttcagg gtgtagttga cggagaagga gtagctgcgg ctaaagcggt tgttgaagtt
      421 gacgattaac tgccgctggc tgaatcgccc gctcgactcg tactggaaga ggttcccgcc
      481 gagcgggttc ggcctaatca gttgacctga cgagtcgcgc agcgggcgcc cgtcgccgtc
      541 cgtgagcggc gcgttgacgt tgcgcgagcg cagcacgtgc agcgagcgcg cgccgatgag
      601 tgagacggag agcgtgacgt tgcgcgcgag ctgccgctcg aggcttatcg ccgtctgcat
      661 cgtgtatggc gtgcgcaggt cgggcgcgag ctgccggacg gtctgcggga tgcggaaggc
      721 cgtaagctcc tcgaccgtcg gcacgtcggg gaagcgcgcg agcagttggc gcgcgagctc
      781 ggcgcgcccg gacgtgtcct cgggcggcgg ttccgttatc aaaaactgct gctgcgtcgt
      841 gccgttgaag cgctcggact gcaagaggag gttctcgccg aagcggtcga agaagacgcc
      901 gaagccgccg cgtatgacgg tctgctgccc gcgcgcgccg cctccaccgc cgccgcccgc
      961 ccccggcgac cacgcgaagg cgagccgagg cgcgaagttc agcgccgagt caatgttcgc
     1021 ctgcgcctcg tagcgcaggc ccgccgagag cgtaaggttg ggcctgacgc gccagtcgtc
     1081 ctgtatgaag gggctgaagt cggtctgccg gacgctcacc tcgggctcgc cgcccgcgac
     1141 ggagaactgc gtcgggcgcg ccgtgccttg cagcgaggcc cggtactgtt cgagcgtcgt
     1201 gaaggtgaac gtaccggcga agttctgccg ggagatgtcg cgcactccgg ccgagcgcag
     1261 acgcgcgccg acctttaggg cgtggtcgcc ccacgcccag gaggtgtagt tctgaagctc
     1321 cacgcggtcc agctcgttcg aggactggcc cgactgcgcg ccgccggccg tgaaggcgtc
     1381 gagcacgcgc agggtcggcg cgaagctccc gccctcgttc tgccggctgt cgcgcgagta
     1441 ctggaagcgc gtctcgttta tgaccttctg gttgatgacg gccgtctcgg tgagccggag
     1501 cgtgtgctcg cggctctcaa cgtcgtaggc gcgctccggc aggttgaagc cgccgacgcc
     1561 ctcgccctcg cggctcgtcc gctcgaagct gtagcgcgcg accagcgtgt tcgtcgggct
     1621 tatctggtag tcgaggcgcg ggctgaaagt cgtgcgccgg tcgggcgtca gcagcgtctg
     1681 gctgaacggg acggccggca gcagcgggtc gtcctcgtcg agcactacgg cctgcacgac
     1741 ttcgttatcg tccgtctccc tgcgctcgaa gtctaggaag aaggaggcgc ggcccgccga
     1801 gatggggccc gagatgttcc cgccgtagcg gcgcgactgg tagggcgcgc gcgtcggcgc
     1861 aaacggcgcg cgcgagttca agctctcgtc gttgaagttg aagaacgcct ggccgcggaa
     1921 gcggtcggtg ccgggcttgg tgaagatttc gacgcggccg tagccgagcc ggtcgtactc
     1981 ggcagagaag gggttgcggt tgatgcgaat ctcgcggatt gattctttcg gcgggaggcg
     2041 cccgcccgag aagccgtcga ggtagatgtc ggcgccgccc tcggcgccga ccgatgggcc
     2101 cgcgagcgcc tggagcgctt cggagaggtc gtcggggtcg tcgggcagcg cgtccaggtc
     2161 ttcgccgcgc agcaccaccg ccccggcgtt cgactcgggg tctgtgccga cgccttcctc
     2221 ggctatgacc gtcacctcct cctgctcgat ggagacggtg agcacgatgt cgagtgggtc
     2281 tgtgcggccg gccgtgatct cgacgccgag gttctcgtag gcggcgaagc ccggctggtt
     2341 gatgcgcacc gtgtagcggc ccggcgcgag cgccgagaag acgtagcgcc cctcgtcgtc
     2401 cgtgacggcc gagcgctcga cgccggccgc gtccgtcgcc gtcacggtcg cgccgacgat
     2461 gactccgccc aactcgtccg tgacgcgccc gcgcagagtg cctagagact gctgcgcggt
     2521 tatagtcgcc gcgcacgcga ataagcaaac cagtaccgcg ccgtggagag cgcggccctt
     2581 ccctccatga agctgtcgca tcattccctg cccgatcaag atttcaaata acgggggaac
     2641 tgcggtcggg ggttttcgga ttcaagttaa agcccgtact gcccgcacgc tcttttactt
     2701 cggctggtcg cgggtggtgc cggtgttgcc ggtgccgccg cccattacgt cgccgggcag
     2761 gccggggctc aagccgcgcg ggtcgtcgcc gccgcggcca ccgaaggagc gtaggacttc
     2821 ggcgtcgccc gtcacgagag ccacggccgt gacgcgctcg ggagtagcgc cgggcgtggc
     2881 cgtcacgatc acggcgtcac ccttcttcaa ctcggcgagc gttatcgcag gcatgcgctc
     2941 aagggcctgc tgcaagttcc cgccgccgaa gccgccgcgc cgcccgccgc cggggccgcg
     3001 cccctgatcg cccgcgcctt cgccgtcagc gcgccgctgc tccgcgcgct cgcgccgccg
     3061 ctgctcgcgc tcctcttcag tgcgcccgcc ctgctggcct ccgcccgact gcgcgcgagc
     3121 ggcgcggcgc tgctcggcct gctgcctgcg cgccgccatc tcgcgggcga actcttcggg
     3181 tatgcggcgc agcatcgtcc tctgccccgt ggcgaccgtg aaggtctggc ccgtctgctc
     3241 gttcctgaca gtgacctcgc cgcgcgcggc gtccaccgag gcgacgctgc ccacgacgcg
     3301 cgtgaacgac cccgacagaa tctcctcggc cgcgaagctg cggccgtcgg cgctgcgctc
     3361 gcccgtggcg cgcatttggt cgccgacctt aacctcgtcg aacgagccgg gccgcgcgtc
     3421 gcccgcgcgc gcagagtctg ccgcgtagcg gaggaagcgc gcgccggccg gcgcgttgat
     3481 agtcacggtc tcctgcccct cgcgcccgcg cgtgaagacg gtcaactgct tcgccgccgc
     3541 gtcaaccgcg gcgacgcggc cgacgagcgt gcgccgctgt ctctcctcgc gctcgcgctc
     3601 gcgctgcgcg gcgagccccg cgccgctcat cactatcaac tgccggacgg gcgcctcgcc
     3661 cgcgctcatg ccgttcggga cgaggacgcg gtcgccgacc tgcacgtcgg cgcgcgtgac
     3721 ccgctcggcc ttgtcgagcg tcgtctcgcc gggcgggaga cggcggaaag tcgtcttgtc
     3781 gtcaaccgcc acggtgcgag actcgcccgc gaccgtcttg acggtgaacc ggccggcggc
     3841 cgcgtcaacc gccgtcacct cgccgacgag gtgctgcgct ggcgcctgcg ccgtctgccc
     3901 ccacgcgggg agcgcgagcg cgaaggcggc taacgccgaa agcacgaaag ctcttttcat
     3961 ctgtgacctc tgtgcgaaat atgcgcgggg agcggccggc cggggcgcgg gcctgcacga
     4021 tagatgcggc cagcggcgtc ggcgttcggg gaaagtttta ggggtcgcgc tgaatatacc
     4081 gcaagagggc gggccgagtc agcccaagcg cgtacacttg ttgggcgcgc gccacccgaa
     4141 aaagcgagcg ggcgccgcga ttttgggatc gcggcgcccg ctctgttgta acggtcactg
     4201 tcctcacccc agcaaccgtg taggcatttg gatacaccgc atgcccagtt gcgggagact
     4261 ataaatcttc cgcgcgcggc gcgcaaccct caaatgcaaa tttaattctc cccgcgcgat
     4321 tgaattattt tatcaaacgg atttcgttaa cttatcgcgc cgagcgccga ggccacttcc
     4381 tccggcaggg gcgaagagaa ctcctcccat tcgttcgtcg ccgggtgatg gaaggcgagc
     4441 cgcgccgcgt gcaggcacag gcgcgcgtgg ggctcgccgc cgtaccagcg gtcgccgact
     4501 atggcgtgtc ccgcgtgcgc gcagtgtatg cgtagctggt tcgtgcggcc cgtcacgggc
     4561 tcgagctcga cgagcgcacg gccgcgcccc ctctccaaca cgcgcaggcg agtctccgcc
     4621 tgcttccccg attcgagcac gcgccacggc ggccgggcgc cctcctcccg cccgacgggc
     4681 gcgttgatga cttgctcttc ggccccgacg ctcccgccga cgacggccag gtatctcttc
     4741 tcgaccagcc tgcggcggaa gtgctgcgag agcc
//
LOCUS       DASPKR010000556         2359 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_213725, whole genome shotgun sequence.
ACCESSION   DASPKR010000556 DASPKR010000000
VERSION     DASPKR010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213725"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            328..909
                     /locus_tag="VD968_15025"
     CDS             328..909
                     /locus_tag="VD968_15025"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE15754.1"
                     /translation="MERKITAGEFESEALPHLDDLYRTAVRLVRDRSEAEDLVQEVYL
                     QAWKSYHKYEPGTNCRAWLYKILFNKTNHHRRRKYSQGGLLQADGTLIAETVACEPPV
                     RQDLTDEEVIEAVDGLPLNYREVVLLADVEEFSYREIAEVLGIPVGTVMSRLSRGRKQ
                     LRDSLAGVAREYGIKDAGREAKSAAAFEALTAA"
     gene            complement(1033..>2359)
                     /locus_tag="VD968_15030"
     CDS             complement(1033..>2359)
                     /locus_tag="VD968_15030"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HYE15755.1"
                     /translation="VASNSSGWSSASIGNWSAVPERVGGFDTDGSTVVFETSLDDYAE
                     VWVDGELVRATGQQGGSVVGGWNAANRLVVGRGVRPGQQIQLAVFGANGPLSAAPTNY
                     IWVRYARLEFYAGARGPLPTTPSEVNVEVKRIDPAIDRIVGLNPKVFKLAEGFEFTEG
                     PVWVRDGGGYLLFSDPNANTIYKFKPNGGEPGELSVFKRPSGYAGADIAEYRQPGSNG
                     LALDPQGRLTINQHGNRRVIRLEKDGSETVLADRFEGRRLNSPNDLIYRSDGTLFFTD
                     PPFGLPKFGEDPRKELPFSGIYSLRDGKLRVVSKDFTGPNGLALSPDEKYLYVGNWDT
                     KRVVVMRYEVRPDGTLANGRPFFDLTPALDREQNAIDGVKVDREGNLYVSGPGGLWVI
                     SAEGKHLGTIITPRHVHNMAWGDEDGKTLYLCARSALYRMRLNVAGIRP"
BASE COUNT          411 a          743 c          811 g          394 t
ORIGIN      
        1 gccgtgcctg ccgtgttcaa tcaagccagc acgtcccgaa gaggatgggg ggtggaccga
       61 atcctgtgac ttaggacgcc gcggcggata aaccccagtc gcgcaccgga ggccgcgagg
      121 caagagcaaa cttgcctcgc ggcctctcat tctggagcgc ggggagcggc gcggcacggc
      181 aggaaggcca gaccgtttta ttcccgcctg caaaaattcc ctgtaaggat tccacggcgt
      241 gggcgaccaa tgggtgtgag cagttgaccc agggcgccgc aatcattcgg aaagagttcc
      301 gttgagcttg aggaggagag tgtccccgtg gaaagaaaga tcacagccgg agagtttgag
      361 tccgaggcgc tgccgcacct cgacgacctg taccggacgg ccgtgcggct agtgcgggat
      421 cgctccgagg ccgaagacct cgtgcaggag gtttacttgc aggcgtggaa gtcctaccac
      481 aagtacgagc cggggacgaa ctgccgcgcg tggctataca agattctctt caacaagacg
      541 aaccaccacc gccggcggaa atactctcag ggcggccttc tacaggccga cggcacgctc
      601 atcgccgaga ctgtcgcctg cgagccgccc gtccgccagg acttgaccga cgaggaggtc
      661 atcgaggccg tggacggcct gccgctcaac taccgcgagg tggtgctgct cgctgacgtg
      721 gaagagttct cctacaggga gatcgcggag gtgttgggga ttcccgtcgg caccgtgatg
      781 tccaggctca gccgcggcag gaaacagtta cgagactcgc tggcgggcgt ggcccgagag
      841 tacggcataa aggacgccgg gcgtgaggcg aaatcggcgg ccgcctttga ggcgctgacg
      901 gcggcgtgac cccggaggtt cgcgcactaa catgacgaac aaaggggcgg ggcggctgtg
      961 atagccacag ccgccccgcc tctttcagca ccgcgcttgt ctgagagtct agcgactctc
     1021 agcgtctgcc actcacggcc tgatgccggc gacgttgagg cgcatacggt agagggcgga
     1081 gcgcgcacaa aggtagagcg tctttccgtc ctcgtcgccc catgccatgt tgtgaacgtg
     1141 gcgcggcgtg atgatcgtgc cgaggtgctt gccctccgca gagatgaccc agaggccgcc
     1201 ggggccggag acgtagaggt tcccttcgcg gtcaaccttg acgccgtcaa tcgcgttctg
     1261 ctcgcggtcg agcgcgggcg tcaggtcaaa gaagggccgg ccgttcgcga gggtgccgtc
     1321 gggcctgacc tcgtagcgca tgacgacgac gcgcttcgtg tcccagttgc cgacgtacag
     1381 gtacttctcg tcgggcgaga gcgcgaggcc gttcggcccg gtgaaatctt tactgacgac
     1441 ccggagcttg ccgtcgcgga gcgagtagat gccggagaag ggaagctcct tgcgcgggtc
     1501 ttcgccgaac ttcggcagtc cgaagggcgg gtctgtgaag aagagcgtgc cgtcggagcg
     1561 gtaaatcaga tcgttagggc tgttgagacg cctgccctcg aagcggtctg cgagcacggt
     1621 ttcgcttccg tccttctcaa ggcggatcac gcggcggttg ccgtgctggt tgatcgtgag
     1681 acggccctgc gggtcgagcg cgaggccgtt cgagccgggc tgccggtact cggcgatgtc
     1741 cgcgcccgcg tagccgctcg gtcgtttgaa gaccgacagc tcgcccggct cccctccgtt
     1801 cggcttaaac ttgtagatgg tgtttgcgtt cgggtcgctg aagagcaggt agccgccgcc
     1861 atcgcgcacc cagacggggc cttccgtgaa ctcgaagccc tcggcgagct tgaagacctt
     1921 cgggttgagg ccgacgatgc ggtcaatcgc cgggtcaatg cgtttgacct cgacgttgac
     1981 ctccgagggc gtcgtgggca gggggccgcg cgcgcccgcg tagaattcga gccgcgcgta
     2041 gcgcacccat atgtagttgg tcggcgccgc cgagagcggg ccgttcgcgc cgaagacggc
     2101 gagctgaatc tgctggcccg gccgcacgcc gcgcccgacc acgaggcggt tcgccgcgtt
     2161 ccacccgccg acgaccgagc caccctgctg ccccgtcgcg cgcaccaact ccccgtcaac
     2221 ccacacctcc gcgtagtcgt cgagcgaggt ctcgaagacg accgtggagc cgtccgtgtc
     2281 gaaaccgccg acgcgctccg ggacggccga ccagttcccg atgctggcgc tcgaccaccc
     2341 ggagctgttc gacgcgacg
//
LOCUS       DASPKR010000557         8054 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_83521, whole genome shotgun sequence.
ACCESSION   DASPKR010000557 DASPKR010000000
VERSION     DASPKR010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8054)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8054
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83521"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1225)
                     /locus_tag="VD968_15035"
     CDS             complement(<1..1225)
                     /locus_tag="VD968_15035"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYE15756.1"
                     /translation="MASSVEDRVIVVGAGHNGLVAACYLARAGLKPLVLERRALVGGA
                     CVTEEFQPGFRCSALTHSAGPLLPRVARELELGRHGLSFVRPQARLFAPSPDGRALVI
                     HDDAARTAEGLRDFSERDAKAWPEFCESFAAIGRVLSPLLERAPPSIEKPSAGDVWAF
                     GKLGRDFRRLARRDAYRLLRWGPMAVADLVSEWFETELLRAAVAARGIAGAFAGPWSA
                     GTSLGLLLQAAFGGSAVPPAAFVRGGMGALTQALAHAAMSAGAEIRTSAEVARVIVRD
                     GRAEGVVLEGGEEIRARAVVSNADPRRTFLRMVDPADLGPDFLMKVRAYRSKGAIAKV
                     NLALAGLPEFTALKGADAGGAAELSGRIHIGPDIDYLERAFDAAKYGDFSPEPCMDIS
                     VPTLTDPTLAPEGRHV"
     gene            complement(1260..2858)
                     /locus_tag="VD968_15040"
     CDS             complement(1260..2858)
                     /locus_tag="VD968_15040"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYE15757.1"
                     /translation="MAQKYDCIVIGGGHNGLVNAAYLARAGKKVLVLERRHVLGGAAV
                     TEEVFPGFKFSVASYVVSLLRPEIIRELDLPRHGLEILPLDGTFTPLPDGDYLWRVND
                     HAKTRREIARHSRLDAEAYDEYGKAMVEMGRFVKPILGMTPPDPTSLSPKGLMDLLFL
                     GRRFQRLPEEDKYNQVQLMTMSAVDFLDRWFETDALKATMAASGIIGTFLGVRSPGTA
                     YVLLHHYMGEIDGAFRSWGLARGGTGAISNSIAEAAREAGAEIRTEAPTAKIIVKGGR
                     ARGVALEDGEEIYADVVSSSVDLRLTFLRMVGEEHLPADFIEDIKRYKFRGSSGKVNL
                     ALDALPDFRSLPGPGAHLRGAVSISPSVEYMERAYDDAKYGRFSRRPYVDIVIPSLTD
                     PSVAPPGKHVMSCFVQYAPYHLKEGTWDERREEFGDTVIDAIAEHAPNIRERILHRQV
                     LTPLDIERTFGLTEGNIFQGELTLEQLFFLRPAPGWAQYRTPVNNLFMCGSATHPGGG
                     IMGAPGRNAALKILDDWKKGKVRK"
     gene            2947..4149
                     /locus_tag="VD968_15045"
     CDS             2947..4149
                     /locus_tag="VD968_15045"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyltransferase family protein"
                     /protein_id="HYE15758.1"
                     /translation="MPIGTAFHERTFPLCESLSYREWSGYYAVSSYEPHHEHEYNAIR
                     NAAALIDISPLFKYRVAGPDATRLVDRIVTRDMRKVSTGQVIYTPWCDERGKVIDDGT
                     VSRLAENVYRWTAADPSLRWLTQNAAGMDVEIEDISEQVSALALQGPTSGRLLKTLVG
                     GADIANLKYFRVTSGEIAGVRVDISRTGYTGDLGYEIWVPSESALRVWDALVEAGRAF
                     DIRPAGMLALDVARVEAGLLLIDVDFHGSKKALTEAQKYSPFEMGLGRLVSAGKAPYV
                     GQRALEAERRRGHAREIVGLEVDWEGVERLYEAAGLPPSMPAAASRVAVPVYRGREQA
                     GKATSTTWSPTLKKLIALATVRREHARPGSRLEIEVTVEAVRHRVGATVVKTPFFNPK
                     RKTATPVT"
     gene            4167..5276
                     /locus_tag="VD968_15050"
     CDS             4167..5276
                     /locus_tag="VD968_15050"
                     /inference="COORDINATES: protein motif:HMM:NF013044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HYE15759.1"
                     /translation="MSRSIKEIVESYDAAAPLEEASTIPAEWYTDERVYELERRTVFA
                     RSWHLAGRADQLEEPGSYVTFEAAGEPLMVVRGGDGVLRGFFNVCRHHAAAVLTDAEG
                     SARSLRCPYHGWTYSLEGDLKGVPDFAGARCFDRASNGLVPVECGAWEGWVFVRVERG
                     GPPLEEFLGAELLRQTRPLGLSAMRWMERRRYEFDCNWKVFVDNYLDGGYHIPHLHKG
                     LDSVLDYANYRIENGERFCLQSSPVVSAGAEAETGAVRRGSRALYYWVYPNFMVNWYE
                     GVMDTNLVLPLGVSRTEVVFDFYFADVSEPARERNLASIAVGQRIQDEDTAICKSVQR
                     GLASRAYGAGRLSPRREAGEHLFHRLLHADLLAGL"
     gene            complement(5300..7036)
                     /locus_tag="VD968_15055"
     CDS             complement(5300..7036)
                     /locus_tag="VD968_15055"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYE15760.1"
                     /translation="MLRGLFRTKNLDDILAAAGGPQFSLKRTLGAFNVTLIGIGAIIG
                     AGIFATVGTAASGTAERAGAGPSLMLSFVITAVVCGFTALCYAELASMVPISGSAYTY
                     SYATLGEIVAWIIGWDLIIEYAIGNVAVAISWAEFFKRLLNNLGIGFPDWLASNYRTA
                     TPEILEAAPHIAGVPIVFNLLAFGIVALITVVLVWGIRESASFNAGMVFIKIVVLLFF
                     VGVALYYVSPGTMATNWRPFQPQGWAGTFTGAAVVFFAYIGFDAVSTVAEETKNPARD
                     LPIGIIASLLICTLLYILVAAVFTGIVPWETVRGWTAAQRGEALTMAMEQIGAPTWQN
                     SVVAAGSVIAHTAVLLVFQLGQPRIFFSMARDGLLPPVFASVHPRFKTPHVTTIVTGL
                     LVGGIAAFATVDEMVSLTNIGTLFAFILVCIGVVVLRHKDPDRPRPFRVPLGAYFLPL
                     LGAASCAFLIYYLPEGSYWRFLGWLMLGLTVYLAYGYTRSAVGQRMGRPARTPLPLKL
                     AAVGFLVVAVGLFIVPHDATFAELVTKLTTSGEEQHGRTLTGFVLLVVGLVVGIAGAA
                     VGTSRVEGVGER"
     gene            complement(7345..7722)
                     /locus_tag="VD968_15060"
     CDS             complement(7345..7722)
                     /locus_tag="VD968_15060"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HYE15761.1"
                     /translation="MRKFTFAAAAPTACACAILLLGACKSPDGAARRAGAAATQPAQG
                     QATPAAKPQATKSEPADGVRRVTPAESQELAERGKAVIVDVRDANSFKTGRIKGSINI
                     PRTELLNRLGELPKDKLLIFYCA"
BASE COUNT         1372 a         2701 c         2719 g         1262 t
ORIGIN      
        1 tgacgtggcg gccctcgggc gcgagcgtcg ggtctgtgag cgtcgggacg gaaatgtcca
       61 tgcagggctc gggcgagaag tcgccgtatt tcgcagcgtc gaaggcgcgc tctaagtagt
      121 ctatatccgg cccgatgtgt attcggccgg aaagctccgc ggcgccgccg gcgtcagccc
      181 ccttgagcgc cgtgaattcg ggcagccccg cgagcgcgag gttgactttc gcgatcgcgc
      241 ctttcgagcg gtaggcgcga accttcatga ggaagtcggg gccgaggtct gcggggtcaa
      301 ccatgcggag gaaggttcgg cgcgggtctg cgttcgagac gactgcgcga gcgcggattt
      361 cctctccacc ttcgaggact actccttccg cccggccgtc gcgcacgatg acgcgcgcga
      421 cttcggcgct cgtgcgaatc tcggcgccgg ccgacatggc ggcgtgggcg agcgcctgcg
      481 tgagagcgcc catcccgccg cgcacgaagg ccgcgggcgg gactgcgctc ccgccgaagg
      541 ccgcttggag caggagcccc aaactcgtcc cggcagacca ggggccggcg aacgcccccg
      601 ctatgcctcg tgccgcgacc gccgcgcgca gcaactccgt ctcgaaccac tcggagacga
      661 ggtctgcgac ggccatcggc ccccagcgaa gcaggcgata agcgtcgcgc cgggccaacc
      721 gccggaaatc acggcccagc ttcccgaagg cccaaacgtc tccggccgaa ggcttctcaa
      781 tcgaaggcgg cgcgcgctcg agcagcggcg agagcacgcg ccctatcgcc gcgaagctct
      841 cgcagaactc gggccatgcc ttcgcgtcgc gctcggagaa gtctctgagc ccctcggccg
      901 tgcgcgccgc gtcgtcgtgt atgacgaggg ctcgcccgtc gggcgacggc gcgaagaggc
      961 gggcttgcgg gcgcacgaag gagaggccgt gccggccgag ctctaactcg cgcgcgacgc
     1021 gcgggagcag cggccccgcc gagtgcgtca gcgccgagca gcggaagccc ggttggaact
     1081 cttcggtcac gcacgcgccg ccgaccaacg cccggcgttc cagcacgagc ggcttgaggc
     1141 ccgcccgagc cagatagcac gccgcgacca gcccgttgtg gccggcccca acgacgatca
     1201 ccctgtcttc aacgctcgac gccatttagg acagcccgcc tcccgtcatc cctccgccgt
     1261 cacttcctta ccttcccctt cttccagtcg tcgagaatct tcagcgccgc gttgcggccg
     1321 ggcgcgccca tgatgccgcc gccggggtgc gtggccgagc cgcacatgaa cagattgttg
     1381 acgggcgtgc ggtactgcgc ccagccgggc gcgggccgga ggaagaagag ctgctccagc
     1441 gtaagctcgc cctggaagat gttgccctcg gtgaggccga acgtgcgctc gatgtcgagc
     1501 ggcgtcaaga cctgacggtg caggatgcgc tcgcgtatgt tgggcgcgtg ctcggcgatg
     1561 gcgtctatca ccgtgtcgcc gaactcctcg cgccgctcgt cccatgtgcc ttccttcagg
     1621 tggtagggcg cgtactgcac gaagcaggac atgacgtgct tgccgggcgg cgcgaccgaa
     1681 gggtctgtga gcgacgggat gacgatgtca acgtaaggcc ggcgcgagaa gcggccgtac
     1741 ttcgcgtcgt cgtatgcgcg ctccatgtac tcgacgctcg gcgagatgga gacggcgccg
     1801 cgcaggtgcg cgcccggccc cggcaagctc ctgaagtcgg gcagggcgtc gagcgcgagg
     1861 ttcaccttgc ccgaagagcc gcggaacttg tagcgcttga tgtcctcgat gaagtctgcg
     1921 ggcaggtgct cttcgcccac catcctgagg aacgtgaggc gcaggtcaac gctcgaagag
     1981 acgacgtcgg cgtaaatctc ctctccgtct tcgagcgcga cgccgcgcgc gcgccccccc
     2041 ttcacgatga tcttcgccgt cggcgcctcg gtgcgaatct ccgcgccggc ctcgcgcgcc
     2101 gcctccgcta tcgagttcga gatcgcgccc gtcccgccgc gcgccagccc ccacgagcgg
     2161 aacgcgccgt ctatctcgcc catgtagtgg tgcagcagca cgtaggccgt ccccggcgag
     2221 cgcacgccga ggaacgtgcc gatgatgccg gaggcggcca tcgtcgcctt gagcgcgtcg
     2281 gtctcgaacc agcggtcgag gaagtcaacg gcgctcatcg tcatgagctg tacctggttg
     2341 tacttgtcct cctcggggag gcgctggaag cggcggccga ggaagagcaa gtccatcagc
     2401 cccttcgggc tcagggaggt ggggtcgggc ggcgtcatgc cgagtatggg cttgacgaat
     2461 cggcccatct cgaccatagc cttgccgtac tcgtcgtagg cttcggcgtc caagcgcgag
     2521 tggcgcgcga tctcgcgccg ggtcttggcg tggtcgttca cgcgccagag gtagtcgccg
     2581 tccgggagcg gcgtgaacgt gccgtcgagc gggaggattt ccagaccgtg ccgaggcaaa
     2641 tcgagctcgc ggattatctc gggccgcagc agcgagacga cgtaggaggc gaccgagaac
     2701 ttgaagccgg ggaagacctc ctccgtcacg gccgccccgc ccagcacgtg ccggcgctcg
     2761 agcacgagga ctttcttccc agcgcgagcc aagtaggccg cgttcaccag cccgttgtga
     2821 ccgccgccta tgacgatgca gtcgtatttt tgcgccatgc tttagaaggt aatgcttgac
     2881 ggaagattcg ctagcatact tataatcgcc cgccgtgaca atcgcccgct gaagaccaaa
     2941 acgcccatgc ccatcggaac cgctttccat gagagaacct tcccgctgtg cgagagcctg
     3001 agctacaggg agtggtcggg ctactacgcc gtaagctcct acgagccgca ccacgagcac
     3061 gagtacaacg caatccgtaa cgccgccgcc ctcatagaca tctcgccgct cttcaagtac
     3121 cgcgtcgccg ggccggacgc cacgcgcctc gttgaccgca tcgttacgcg cgacatgcgg
     3181 aaagtctcca cggggcaggt catctacacg ccctggtgcg acgagcgcgg gaaggtcatt
     3241 gacgacggga ctgtctcgcg cctcgcggag aacgtgtacc gctggacggc ggcagacccc
     3301 agtttgcgtt ggctcacgca gaacgccgcg gggatggatg tggagataga agacatctcg
     3361 gagcaggtct cggcgctcgc gctgcaaggc ccgacctcgg ggcgtcttct caaaactctg
     3421 gtcgggggcg cggacatcgc gaaccttaaa tacttccgcg tcacgagcgg cgagatagcg
     3481 ggcgtccggg tggacatttc gcgcacgggc tacacgggcg acctcggcta cgaaatctgg
     3541 gtgccgtcgg agtcggccct acgcgtctgg gacgcgctcg tggaagccgg ccgcgccttc
     3601 gacatacggc ccgcggggat gctcgcctta gacgttgcgc gcgtagaggc ggggctccta
     3661 ctgatagacg ttgacttcca cgggagcaag aaggctctga cggaggcgca gaagtattcg
     3721 ccgttcgaga tggggctggg gcggctggtg agtgcaggca aggcgcccta cgtcgggcag
     3781 cgcgcgcttg aggcggagcg gcggcgcggc cacgcgcgcg agatagtcgg gctagaagtt
     3841 gactgggaag gggtcgagcg actctacgag gccgcggggc ttccgccctc gatgccggcc
     3901 gccgcctcgc gcgtggccgt ccccgtctat cgcggccgcg agcaggccgg caaggcgact
     3961 tccacgacgt ggtcgcccac gctcaagaag ctcatcgcgc tcgcaaccgt ccggcgcgag
     4021 cacgcgcggc cgggctcgcg cctcgaaatc gaggtcacgg tcgaggccgt gcgccaccgc
     4081 gtcggcgcca cggtcgtaaa gacgcccttc ttcaacccga agcgcaagac ggcgactccc
     4141 gtcacgtaga cagctaaacg acagccgtga gccgctcaat caaagagatc gtcgagagct
     4201 acgacgccgc cgcgccgctc gaagaggctt cgactattcc ggccgagtgg tacacagacg
     4261 agcgcgtcta tgagttggag cggcgcacgg tcttcgcgcg ctcttggcat ctcgcgggtc
     4321 gcgccgatca gctcgaagag ccgggcagct acgtcacgtt cgaggcggcg ggcgagccgc
     4381 tcatggtcgt gcggggcggt gacggcgtgc tgcgcggttt cttcaacgtc tgccgccacc
     4441 acgccgcggc cgtcctgacg gatgcggaag ggtcggcccg ctcgctgcgc tgcccttacc
     4501 acggctggac ttactcgctc gaaggcgacc tcaaaggcgt ccccgacttc gcgggcgcgc
     4561 gctgcttcga ccgcgcgtcg aacgggctcg tgcccgtgga gtgcggggcg tgggagggct
     4621 gggtttttgt cagggtcgag cggggcggcc ctccgctcga agaattcctc ggggcggagc
     4681 tgttaaggca gacgcgcccg ctcggcctat cggcgatgcg ctggatggag cggcggcgct
     4741 acgagttcga ctgcaactgg aaggtcttcg ttgacaacta cctcgacggc ggctaccaca
     4801 tcccccacct gcacaagggg ctagacagcg tgctcgacta cgcgaactac aggattgaga
     4861 acggcgagag gttctgcctg cagtcgagcc ccgtggtgag cgccggcgcc gaggccgaga
     4921 cgggcgccgt gcgccgtggg agccgcgcgc tctactactg ggtttacccg aacttcatgg
     4981 tcaactggta cgagggcgtg atggacacga acctcgtgct gccgctcggc gtgagccgca
     5041 cggaggtcgt tttcgacttc tacttcgcgg acgtgtcgga gccggcgcgc gagcgcaacc
     5101 tcgcgagcat cgccgtcggg caaaggattc aggacgaaga cactgccatc tgcaagtccg
     5161 tccagcgcgg cctcgcctcg cgtgcctacg gggccgggcg cctctcgccc cgccgcgagg
     5221 ccggcgagca cctcttccac aggctcctcc acgcagacct gctcgcgggg ctctgagaaa
     5281 aactcccgcg cccgcgccgt cacctttctc ccacgccctc taccctcgaa gtgccgaccg
     5341 cggcgccggc tatgcctacg acgagcccga cgacgagcag gacgaagccg gtcagcgtgc
     5401 ggccgtgctg ctcctcgccc gatgtcgtca gcttcgtcac gagctccgcg aaggtcgcgt
     5461 cgtgcgggac gatgaaaagc ccgacggcga cgacgaggaa gcccacggcc gccaacttga
     5521 gcggcagggg cgtccgcgcc ggccgcccca tcctctgccc gaccgcgctg cgcgtgtagc
     5581 cataggcgag atagaccgtc agccccagca tcagccagcc gaggaagcgc cagtaggagc
     5641 cctcgggcag gtagtagatt aggaacgcgc acgacgcggc gccgagcagg ggtaagaagt
     5701 aggcgccgag cggcacgcgg aacgggcgcg gccggtcggg gtctttgtgg cgcagcacga
     5761 cgacgcctat gcagacgagt atgaaggcga agagcgtgcc gatgttggtg aggctcacca
     5821 tctcgtccac ggtcgcgaag gcggcgatgc cgccgacgag caggcccgtg acaatcgtcg
     5881 tcacgtgcgg cgtcttaaac ctcgggtgga cgctcgcgaa gacgggcggg agcagcccgt
     5941 cgcgcgccat cgagaagaag atgcgcggct gcccgagctg gaagacgaga agcacggccg
     6001 tgtgcgctat gaccgagccg gccgcgacga ccgagttctg ccacgtcggc gcgcctatct
     6061 gctccatcgc catcgtcagc gcctcgccgc gctgcgcagc cgtccagccc ctgacggtct
     6121 cccacggcac gatgccggtg aagaccgcag cgacgaggat gtagagcagc gtgcagatta
     6181 ggagcgaggc gatgatgcct atcggcaaat cgcgcgctgg gttcttggtc tcctccgcca
     6241 cggtcgagac ggcgtcgaag cctatgtagg cgaagaagac gacggccgcg cccgtgaaag
     6301 tgccggccca gccctgcggc tggaacggcc gccagttcgt cgccatcgtc cccggcgaga
     6361 cgtagtagag cgccacgccg acgaagaaga gcagcacgac tatcttgatg aagaccatgc
     6421 cggcgttgaa gctcgccgac tcccttatgc cccaaaccag cactaccgtt atcagcgcga
     6481 cgatgccgaa cgccaggagg ttaaagacga tgggcacgcc cgctatgtgc ggcgccgcct
     6541 cgagtatctc gggcgtcgcg gtgcggtagt tcgacgcgag ccagtcgggg aaccctatgc
     6601 ctaagttgtt cagcagccgc ttgaagaact cggcccagct tatcgccacg gcgacgttgc
     6661 cgatggcgta ctcgattatc aagtcccagc cgattatcca cgccactatc tcgcccagcg
     6721 tcgcgtaaga gtatgtgtag gccgagcccg agatgggcac catcgaggcc agctccgcgt
     6781 agcacaaggc cgtgaacccg cacaccaccg ccgtgatgac gaacgacagc atcagcgacg
     6841 gccccgcgcc agcgcgctcg gccgtccccg aagccgccgt gccgacggtg gcgaatatgc
     6901 cggcgccgat gatggcgccg atgccgatga gcgtcacgtt gaaggcgccg agcgtgcgct
     6961 tcagcgagaa ctgcgggccg ccggccgcgg cgagtatgtc gtcgaggttt ttggtgcgaa
     7021 agagcccacg aagcaaggct ttgcctccga gaagagaagt gaccgaattg cgcttgtggt
     7081 aaaggctcgg ggccgcggcc cctagacgcg cggagtttgg cacgaaccgc gcccggcagg
     7141 caacagagaa gggaaaaaaa agtgacgggt gacgagctta tctcaggctc gccacccgtc
     7201 actcggccac ttttcttact tagagggctc gacggggagc ttctgcgtag tccaggcgtg
     7261 ccagccgccc aggagcgcgg ccgtgttctc gtaacctttg ggctttatgt cgagcgccgc
     7321 accggcgctc tgctgctcgc ttggtcaagc acagtagaag attaggagct tgtctttggg
     7381 cagctcgccg agcctgttca gcaactccgt gcgcgggatg ttgattgagc ccttgatgcg
     7441 gcccgtcttg aacgagttcg cgtcgcgaac gtcaacgata acggccttgc cccgctcggc
     7501 caactcctgc gactcggccg gcgtcacgcg ccgcacgccg tcggccggct ccgacttcgt
     7561 ggcctgcggc ttcgcggccg gcgtggcctg cccctgcgcg ggctgcgtcg ccgcggcccc
     7621 cgctcgccgc gccgcgccgt ccggcgactt gcacgcgccg agcaagagaa tcgcgcacgc
     7681 gcaagccgtg ggcgccgccg ctgcaaaagt gaatttcctc ataacccttt aaaaccccct
     7741 aaccgccttc ggcatgaact ttatggccga tagcatcgca caaatgacta tctgatggaa
     7801 gcggccaggg cgtccggggc ttcaacttca aggcccgcaa acgcctgtcg ctctcatcgg
     7861 cgccccggcc ccgaaaggct cgggcggtgc cacatagtct gtgcccgccc tttacggggc
     7921 cgagttggag aaacccgagg ccgaggggcg cgtgggcgac cgcctcgccg tggggctcac
     7981 ggccctccgc gccctcgttg acacgaatat ttgagcccgc cccgccgcct tcgacgctag
     8041 aacaggtcgg ggag
//
LOCUS       DASPKR010000558         2833 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_990251, whole genome shotgun sequence.
ACCESSION   DASPKR010000558 DASPKR010000000
VERSION     DASPKR010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2833)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2833
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_990251"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2136..2681
                     /locus_tag="VD968_15065"
     CDS             2136..2681
                     /locus_tag="VD968_15065"
                     /inference="COORDINATES: protein motif:HMM:NF019241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1572 family protein"
                     /protein_id="HYE15762.1"
                     /translation="MADSVAAHFLEDAVKVFRGQKALADKAAAQLSDEEFFHTIDAES
                     NSIALIMKHMAGNMRSRWTDFLTTDGEKPDRHRDSEFEREGEDRRAVTELWEAGWAVL
                     FATLAALKPDDMMRTVTIRGEPHTVVEAVNRQLSHYGQHTGQIVFLAKHLKSGAWETL
                     SIPRGQSETFNAKMMGDKPRG"
BASE COUNT          492 a         1005 c          909 g          427 t
ORIGIN      
        1 ccccgagcga caaaagcagc gcggccgcga gccccagcgc cgaagccgcc tgccccacgg
       61 ccgccttccg cgacctcatc gagttcctga acagcgccca cttcaaccac accagcgccg
      121 ccagttgaga cattcgcctt ccccacgccc ggccgcgccg cggcggcagg ctcgaaaaag
      181 ttattagaag ctcaagtagc tcgtccacta ccccaaaagg ctagtcgtcc gccgcgctaa
      241 gcgatatact gcgcggcaat caagggacgc ctcgctcttt gaaaagtcat ttcctcgaag
      301 aggaaggaga ccacatgaga aatatacgcc tcacgaacgt gctccgtcac ttgatgtact
      361 ttggcgccct cgtcaccctc agcggatgcc cgtacaattc tccgccgccg tcggagcggg
      421 agccgcgaca ggttcaacag catgcgacag cgacgcctac gccggcccct ccgcccgtct
      481 gcgatatcgc gcttgtcccg gagggcggcc ccgtaatagt gccttcgccg ccactgcgcg
      541 tcgccgcgaa cacgaccgcc ggttgcagcg taacctccgt gccaccgccc atcgtggtgc
      601 cgccgggcgc attcaacccg ggctgcattc agacccccgg cacggcagcc aacagcattg
      661 tcgttaactg tggcggggtg cctgcgtcgg cacagccgcc gaagtcgggt ctggggctca
      721 cgttcaagtg cacatgccct ccagggagcg ggataggtga gaagaccgtg ttcgcctcgt
      781 acctctttta actcgacagg agccagccgc ccggctggct cgcaatcgaa caagatgagt
      841 tcggcgccgg ggcgcgtatc gccccggcgc cgacttatgt ctgctccacg gtccggagtc
      901 tcgcgcctca ccgcggaagg gtttcatggc tgagagattc accccacgtc gcctgtccgt
      961 ctcggccttc gcgctcgcac tcctgacggc ggcacttccg cctacggctt ccgccggcac
     1021 gcccgcccac ccgcacacga ccggcactca gacggcggct cgacccgcgc ggcggcgggg
     1081 gcggccgctt tggccgggct cgcggttcac agaggcagac cgcgcccgcg cgacgcggca
     1141 gggactgcgc ttcatctact ctacggcgct cggcgaggag aacttccggg agtacgggag
     1201 cgactacctc tggtgcttct acaccgtggg cgcgagcgtg cgcgacgcag gcgtgcgcgc
     1261 gatggcgcgc agtatgggcg cggagcgtgc gcgcgcgtgg aggcgctcgc acgccacgct
     1321 ccccgacgag gccgacgcgc agacggtcgc cgacttcgcc ttcggcggtg acgcggccga
     1381 cagcctcggc ctgcgcgatg agaggctgaa gcgggaagtc cgccgcgccg ccgcacggtt
     1441 cacggcccgc gacttcctcc tcttcgaccc gctcacggag ccaccgcccg ccgatgtgcc
     1501 ggagccctgc gagcacgacc agtggcaggg cagccgcggc gagcgtgagt gccgacgctg
     1561 ccgacgcccc ttgaagatga gggcgcggca ggacgtatgg tacgacgcgc tcatcaccgc
     1621 ctacgtcggc gagcgctacg gtgtgcggct cggcgcccga tacgcggacg tgctacgctg
     1681 gctgccgtcg ctcaggccct acaaggccgc cgacacgacg ggcgccgagt tctacgcgac
     1741 ggtttacgcc gtcacgcacg tcgtctatac gctcaacgac tacggcctat accgcctgcc
     1801 gccgcgcgcg cttccccttg agttcaagtt cctgcgcgcg aacctgcgcg aggccataag
     1861 gcagcgcgac gccgacatgc tcggcgagtt catggactca ctgcgcgcct tcgggctcac
     1921 ggaggccgac ccggagatac gcgagggcgt cgagtacctg ctcgcaaacc agaacgccga
     1981 cggcagttgg ggcgacgtga acgagcggga cgtgtatctt cgttatcatc ccacttggaa
     2041 cgccgtcgcg gcgctcagcc tctacgcctg gcgcggcacg gccccgaggc tttcgaagct
     2101 cgaacatctt cttcaggaga aagagggtag ggctaatggc agattcggtc gcggcacact
     2161 tcctcgaaga cgcggtcaag gtctttcgcg ggcagaaggc gctcgccgac aaggccgcgg
     2221 cgcagttgag cgacgaggag ttcttccaca cgattgacgc ggagtcgaac agcatcgcgc
     2281 tcatcatgaa gcacatggcg ggcaacatgc gctcgcggtg gactgacttt ctcaccacag
     2341 acggcgagaa gccggacagg caccgcgact cggagttcga gcgcgagggc gaagaccgcc
     2401 gcgcagtcac ggagttgtgg gaggcgggct gggccgtcct attcgcgacg ctcgccgccc
     2461 tcaagcccga cgacatgatg cgcaccgtca cgatacgagg cgagccgcac acggtcgtcg
     2521 aggccgtcaa ccgccagctc tcgcactacg gccagcacac ggggcagata gtcttcctcg
     2581 ccaagcactt gaagtccggc gcctgggaga cgctcagcat cccgcgcggg cagtcggaga
     2641 ctttcaacgc gaagatgatg ggagacaagc cgcgtggctg acgaaccgga cgcgcgcgcc
     2701 tacgtggggc tcggctcgaa cctcggcgac cgcgccggca acctcctgct tggcctgcgc
     2761 gggatgctcg ccgccggact gcggatagct cgcctctcgt ccgtctacga gaccgagccc
     2821 gcaggcgtcc cag
//
LOCUS       DASPKR010000559         4056 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1765287, whole genome shotgun sequence.
ACCESSION   DASPKR010000559 DASPKR010000000
VERSION     DASPKR010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4056)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4056
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1765287"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..400
                     /locus_tag="VD968_15070"
     CDS             <1..400
                     /locus_tag="VD968_15070"
                     /inference="COORDINATES: protein motif:HMM:NF015113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HYE15763.1"
                     /translation="NRSLLAFMMDAYTEKTTEKGEKRVVLALHPELAPIKVAVLPLAK
                     NKPEIVSMARQLKGRLQPSMRAVYDDTGGIGKLYARQDEIGTPFCVTVDHQSLEDEAV
                     TVRDRDTWGQERVKVSDLVEHLKKRLGAGC"
     gene            450..926
                     /locus_tag="VD968_15075"
     CDS             450..926
                     /locus_tag="VD968_15075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15764.1"
                     /translation="MPVVKKRNQQTESRLLLESDDPVELPPAEVEDSAVVLQFEQFRQ
                     YVPELLEELRDGTLAEPVPVMMDGSTFVIHGDTRSFWVKLWHSSPERSRVERVQVISC
                     LPSTRGMQLIVDGPDDYDDDEDADEDDYGDEVDYLDHDDLDDDDDEGAAGDHGQPR"
     gene            933..2333
                     /locus_tag="VD968_15080"
     CDS             933..2333
                     /locus_tag="VD968_15080"
                     /inference="COORDINATES: protein motif:HMM:NF014069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HYE15765.1"
                     /translation="MPSPIPEKILELARAVRSEGGRALMVGGCVRDRLMGRGAKDWDV
                     EVYGVEPSRLRGLLDRMGRVNVVGEAFTVYKLGHDLDVSLPRRERKAGRGHRGFVIEG
                     DPTMSVEEAARRRDFTVNAILEDPLGGEILDPFGGREDLERRLLRAVSPDTFAEDSLR
                     VLRAAQFAARFNFDVEPRTVELCRGIDLTDLPAERVWGELEKILLVAREPSVGLRWLD
                     ELGATRQLFPELHALKGVEQEYDWHPEGDVFTHTLLVCDRARELVDDLDYARRAAVML
                     AALCHDFGKPATTALVEGRIRSRGHEEAGAAPTLSFLDRLKVFTLEGYDVRSQAVALV
                     RDHLKPGEFYRLRDEVSDGAFRRLARRCELELLYRVAKADSLGRNAPWVPRERWFTAE
                     AQEWFIRRARELAVEKRPPPPLLMGRHLIEMGLRPSPLFKKILDAVYEMQLDNRVRDL
                     EEAKAAAGELIRQGGV"
     gene            2490..3725
                     /locus_tag="VD968_15085"
     CDS             2490..3725
                     /locus_tag="VD968_15085"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYE15766.1"
                     /translation="MIDFELTDDHKAIRQTVREFALREVAPYIKEWDEKQHFERPVLD
                     KMAELGLLGVCIPEEYGGAGFDYISLGLVCEELEAVDTFLRVIMSVHTGLNSMSLYTW
                     GTEEQKRKYLVPQAKGEKLATYGLTEPGAGSDVVGARSVARREGDEWVLNGEKMWISL
                     AGDVADNFLFFCWTDEEKRRNRDHSGMSCFIVERGMKGFSSGTIHGKMGIRAGNTGYF
                     SLQDVRVPQENMLGEEGEGFKIAMFALEQGRYTVAAGATGVIRASRDASVAYALERET
                     FGTKIANHQLVKQKIAEMEADYQMCHLLWLRAGYLKNQGLPNARATSLAKWQATVRSE
                     KAASMAIEVHGANGFSNDYPVERYLRNCKAAVIYEGTRDIHTIMQADWALGLKGEKPA
                     RKTLPPYRPTESRDAVAAG"
BASE COUNT          728 a         1332 c         1348 g          648 t
ORIGIN      
        1 caaccgctcg ctgctcgcct tcatgatgga cgcctacact gagaagacga ccgagaaggg
       61 cgagaagcgc gtcgtgctcg cgctgcaccc ggagcttgcg ccgataaagg tcgcggtgct
      121 gccgctcgcg aagaacaagc ccgagatagt ctcgatggcc cggcagttga aggggcggct
      181 gcagccctcg atgcgcgccg tctatgacga cacgggcggc ataggcaagc tctacgcccg
      241 gcaggacgag ataggcacgc ccttctgcgt cacggttgac caccagtcgc tcgaggacga
      301 ggccgtcacg gtgcgcgacc gcgacacgtg gggccaggag cgcgtcaaag tctccgacct
      361 ggtcgagcac cttaagaaga ggttaggtgc cgggtgctag atgtcggtaa aacccggcac
      421 ccggcatctg ccatccagca tcagttctta tgcctgtagt caaaaagagg aaccagcaga
      481 ccgagtcgag gctgctgttg gagtcggacg accccgtgga gcttccgccc gcggaggtcg
      541 aggactccgc ggtcgtcctt cagttcgagc agttccgcca gtacgtgccg gagcttctcg
      601 aagagctgcg cgacggcacg cttgccgagc ccgtccccgt gatgatggac ggctcgacct
      661 tcgtcataca cggcgacacg cgcagcttct gggtgaagct ctggcactcg tctcccgagc
      721 ggtcgcgcgt cgagcgcgtg caggtcataa gctgcctgcc ctccacccgc ggcatgcagc
      781 tcatcgttga cggcccggac gactacgacg atgacgaaga cgctgacgaa gacgactacg
      841 gcgacgaggt tgactactta gaccacgacg acctcgacga cgatgacgac gaaggcgcgg
      901 ccggcgacca cgggcagccg cgctgaggcc cgatgccttc accgatcccc gaaaaaatct
      961 tggagctcgc gcgcgcggta agaagtgagg gcgggcgcgc tctgatggtg ggcgggtgcg
     1021 tgcgcgaccg cctgatgggg cgcggcgcga aggattggga cgttgaagtt tacggcgtcg
     1081 agccttcgcg gctgcgcggc ctgctcgacc ggatggggcg cgtcaacgtc gtcggcgagg
     1141 cgttcaccgt ctataagctc ggccacgacc tcgacgtgag cctcccgcgc cgcgagcgca
     1201 aagcggggcg cggccaccgc ggcttcgtca tcgagggcga ccccacaatg tctgtcgagg
     1261 aggccgcgcg ccgccgcgac ttcaccgtca acgccatcct cgaagacccg ctcgggggcg
     1321 aaatcctcga ccccttcggc ggccgcgaag acctcgaacg ccggctgctc cgcgccgtct
     1381 cgcccgacac cttcgccgaa gatagcttgc gggtgctgcg tgccgcgcag ttcgcagccc
     1441 gtttcaattt cgacgtggag ccgcgcacgg tcgagctgtg ccgggggatt gacctcacag
     1501 acctcccggc cgagcgcgtc tggggcgagc tcgagaagat tctgctcgtc gcgcgcgagc
     1561 cctcagtcgg cctgcgctgg ctcgacgagc tcggcgccac gcgtcagctc ttccccgagc
     1621 tacacgcgct caagggcgtg gagcaggaat acgattggca ccccgagggc gacgttttca
     1681 cacacaccct tctcgtctgc gatcgggcgc gggagctggt tgacgacctc gattacgcgc
     1741 ggcgggcggc ggtgatgctg gcggcgctgt gccacgactt cggcaagccc gcgacgaccg
     1801 cgctcgtaga ggggcgcata cgctcgcgcg gccacgagga ggcgggcgcg gcgccgacgc
     1861 tctcgttcct cgaccggctg aaggtcttca cgctcgaagg ctacgacgtg cgctcgcagg
     1921 ccgtcgcgct cgtgcgcgac cacctgaagc ccggcgagtt ctaccggctg cgcgacgagg
     1981 tgagcgacgg cgccttccgg cggcttgcgc gccgctgcga gctcgagctg ctctaccgcg
     2041 tcgcgaaggc cgactcgctc gggcgcaacg cgccgtgggt tccgcgcgag cgctggttca
     2101 cggccgaggc gcaggagtgg ttcatacggc gcgcgcgcga gctggcggtc gagaagcggc
     2161 cgcccccgcc gctcctcatg ggccgccacc tcatcgagat gggactgcgc ccctcgccgc
     2221 tcttcaaaaa aatcctggac gccgtctatg agatgcagct cgacaaccgc gtgcgcgacc
     2281 tggaagaagc caaggcggcg gcgggcgagt taatccggca gggcggggtg tgacgcgccc
     2341 ctgccgctcg ccgtcgcgtc ccgcggtgtt gtaagatgtc gcttaacttt ttgaccagcc
     2401 gctgcgactg aagcccttga gtgccttact gcccgcaaac cctcgcgcgg gcgcgcccgc
     2461 ggccaatcca caccgaagga agacaagcaa tgattgattt cgaactgacc gacgaccaca
     2521 aggccatacg ccagaccgtg cgcgagttcg cgctgaggga ggttgcgccc tacataaagg
     2581 agtgggacga gaagcagcac ttcgagcgcc cggtgctcga caagatggcc gagctgggcc
     2641 tcctgggcgt ctgcataccc gaggagtatg gcggcgccgg cttcgactac atctcgctcg
     2701 ggctagtctg cgaggagctc gaggcggttg acaccttcct gcgcgtcatc atgtccgtgc
     2761 acacgggcct caactccatg tcgctctaca catgggggac tgaggagcag aagcgcaagt
     2821 acctcgtgcc gcaggctaag ggcgagaagc ttgccaccta cggcctgacc gagccgggcg
     2881 caggcagcga cgttgtcggc gcgcgctccg tcgcgcggcg cgagggcgac gagtgggtct
     2941 tgaacggcga gaagatgtgg atttcgctcg cgggagacgt ggccgacaac ttcctcttct
     3001 tctgctggac ggacgaggag aagcgccgca accgcgacca ctccggcatg tcctgcttca
     3061 tcgtcgagcg cggcatgaaa ggtttctcct ccggcaccat ccacggcaag atgggcatac
     3121 gcgccggcaa caccggctac ttctccttgc aggacgtgcg cgtgccacaa gagaacatgc
     3181 taggcgagga gggcgagggc ttcaagatcg ccatgttcgc cttagagcag gggcgctaca
     3241 cggtggccgc gggcgcgacc ggcgtgatac gcgcctcgcg cgacgcctcg gtcgcctacg
     3301 ccctggagcg cgagacgttc gggacgaaga tagccaacca ccagctcgtc aagcagaaaa
     3361 tagccgagat ggaggccgac taccagatgt gccacctgct ctggctgcgc gccggctacc
     3421 tgaaaaatca gggcctcccg aacgcgcgcg cgacctccct cgcgaagtgg caggcgaccg
     3481 tgcgcagcga gaaggccgcc tcgatggcga ttgaagtcca cggcgcaaac ggcttctcga
     3541 acgactaccc cgtcgagcgc tacctgcgca actgcaaggc cgccgtcatc tacgaaggca
     3601 cgcgcgacat acacaccatc atgcaggccg actgggcgct cggcctcaag ggcgagaagc
     3661 ccgcgcgcaa gactctcccg ccctaccgcc cgacggagtc ccgcgacgca gtcgccgccg
     3721 gttgaagatc ttaacggcaa agcttagagg gaggggggac aaataaacgt ctcccctccg
     3781 ccctttcgtg tctgtgatag tggcgggacc ttaatgccag ctggacgcgc cggcctattt
     3841 gtatactcgg ctgtggcgcg ggtgctagcc ccgcctcggc tacgactcgg gaatgggaaa
     3901 gacggccccg atgaagcctt caagcgcatt gatcagccca gtgatagact cgatgacccg
     3961 ctgcatgttc tctaggcttt gtaggtcggc tttcatcctt cggttgatct ggacgaggct
     4021 gtcgttggca ctgataaagc gctgggtgtt cccggc
//
LOCUS       DASPKR010000560         2005 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1379421, whole genome shotgun sequence.
ACCESSION   DASPKR010000560 DASPKR010000000
VERSION     DASPKR010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2005)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2005
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1379421"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1035)
                     /locus_tag="VD968_15090"
     CDS             complement(<1..1035)
                     /locus_tag="VD968_15090"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE15767.1"
                     /translation="MRRRDFLRQGLAAAAGAVVVGAQSPSERLARRGEPKKVIVVGAG
                     LAGLSAAYELTEAGHDVTVLEARTRPGGRVLTLREPFSDGLYAEAGAMFIPDTHEFTL
                     RYAKLFGLALDPFRGPGGKGVSHVRGRRVEANWGDPVELPVELSPAERSMNRDELWRK
                     YRPPSVFKELGDPTAPGWPPPSLKKYDEISYVEFLRRNGASPGAVELLTFGTNGLWGE
                     GLGTVSALTVLRDSWHQRGSDQWLRVRGGNDLLPKAFASRLSDRIRYGTPVVRIEHDS
                     RGVRAVAERAGARETFAADRLVCAVPFSVLRRVEVSPPFSEGKRRAVEQLSYFSAARV
                     SLQLRKKFWHD"
     gene            complement(1070..>2005)
                     /locus_tag="VD968_15095"
     CDS             complement(1070..>2005)
                     /locus_tag="VD968_15095"
                     /inference="COORDINATES: protein motif:HMM:NF013219.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HYE15768.1"
                     /translation="QQPEEDGAGYQRLDLSALAADERARVIFFQLRLPRVVMAGMVGA
                     SLAIVGAALQAIFRNPLAEPLTLGVSGGGALGASVAIAFGLGAKVAGLPFVFVSAFLG
                     AAAAVAVVYRLARTGAVVLPGALLLAGVVVNTISAAGVVVIQYFADYSRALQILRWTI
                     GSLDVVGFDLVWRMLVFLVPGWLVLFAAARDLHLLAVDEETAASLGVNVRRSERLVYA
                     ASSLIVGVTVAVGGTIGFVGLIVPHAVRLLFGEDVRVMMPCSFLLGAAFLMLADALAR
                     TALGAGELPVGAITALAGGPVFLWLLRRQQRYAAM"
BASE COUNT          345 a          716 c          685 g          259 t
ORIGIN      
        1 gtcgtgccag aattttttgc gcaactgtag cgagacgcgc gcggcagaga agtaggatag
       61 ctgctcgacg gcgcgccgct tcccctccga gaagggtggc gagacctcga cgcgcctgag
      121 cacggagaaa gggacggcgc agactaatcg gtctgcggcg aatgtctccc gcgcgcccgc
      181 gcgctcggcg acggcgcgca cgccgcgcga gtcgtgctcg atgcggacga cgggggtgcc
      241 gtaccgaatc ctgtccgaaa ggcgcgaggc gaaggcttta ggcaggaggt cgttaccgcc
      301 cctgacgcgg agccactggt ctgagccgcg ctggtgccaa ctgtcgcgca ggactgtgag
      361 cgccgagacc gttcccagcc cttcgcccca gagcccgttc gtgccgaacg tgagcagctc
      421 gacggcgccg ggcgacgcgc cgttgcggcg caggaactcg acgtaagaga tttcgtcgta
      481 cttcttcaaa gacggcggcg gccagcccgg cgccgtcggg tcgcccagct ctttgaagac
      541 ggagggtggc ctgtacttcc gccacagctc gtcgcgattc atagagcgct cggccgggct
      601 cagctccacg ggcaactcga cggggtcgcc ccagttggcc tcgacgcggc ggccgcgcac
      661 gtggctcacg cccttgccgc cgggcccgcg gaaggggtcg agcgcgaggc cgaagagttt
      721 ggcgtagcgc agcgtgaact cgtgcgtgtc tgggatgaac attgcgccgg cctcggcgta
      781 gaggccgtcg gagaacggct ctcgaagcgt gagcacgcgc ccgcccgggc gtgtgcgcgc
      841 ctctagcacg gtcacgtcgt ggcccgcctc cgtaagctcg tatgcggccg acaggcccgc
      901 gagccccgcg ccgactacta tgaccttctt cggctcgccg cgccgcgcga gcctctcgga
      961 cggcgactgc gcgccgacga cgaccgcccc cgccgcggcc gccaagccct gacgtaagaa
     1021 atcccttcgt cgcatccgtc accttcccgc gtggcctact gctaaagttt cacatcgcag
     1081 cgtagcgctg ctgcctgcgc agcaaccaga ggaagacggg gccgcccgct agcgccgtga
     1141 tggcccctac gggcagctcg cccgcgccga gcgccgtgcg cgcgagcgcg tccgcgagca
     1201 ttaggaacgc ggcgcccagc aggaacgagc acggcatcat cacgcgcacg tcctcgccga
     1261 agaggaggcg gacggcgtgc gggacgatga gcccgacgaa gccgatggtg ccgccgaccg
     1321 cgaccgtcac gccgacgatg agcgaggagg ccgcatagac gagccgctcg ctgcggcgga
     1381 cgttgacgcc gaggcttgcc gccgtctcct cgtccacggc cagcaggtgc aggtcgcgcg
     1441 ccgcggcgaa aagcaccagc caccccggca cgaggaagac gagcatgcgc cagacgaggt
     1501 cgaagccgac cacgtcgagg ctgcctatag tccagcgcag aatctggagg gcgcgcgagt
     1561 agtctgcgaa atactgtatg acgacgacgc ccgccgccga gatggtgtta acgacgacgc
     1621 ccgcgagcaa gagcgccccc ggcaacacta ccgcgcccgt cctcgccagc ctatagacga
     1681 ccgcgacggc cgccgcggca cccaggaacg ccgacacgaa gacgaaaggc aggcccgcga
     1741 ccttcgcccc gagcccgaac gcgatggcga cgctcgcgcc cagcgcgccg ccgcccgaga
     1801 cgcccagcgt cagcggctcg gccagagggt ttcggaatat cgcctgcaaa gccgcgccca
     1861 ctatcgcgag cgaagccccg accatcccgg ccatcacgac gcgcggcagt cggagctgga
     1921 aaaagattac gcgcgctcgc tcgtccgcgg cgagcgccga caggtcgagc cgctggtagc
     1981 cggccccgtc ttcctctggt tgctg
//
LOCUS       DASPKR010000561         3573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1379480, whole genome shotgun sequence.
ACCESSION   DASPKR010000561 DASPKR010000000
VERSION     DASPKR010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3573)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3573
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1379480"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3102)
                     /locus_tag="VD968_15100"
     CDS             complement(<1..3102)
                     /locus_tag="VD968_15100"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HYE15769.1"
                     /translation="MKSPRRFYALIALCCAVAAGLVSRPGTPAALANHTAGPSSVTIA
                     GSLQDELGCSGDWQPNCANTHLSYDANDDVWQGVFNVPAGNWEYKAPLNNSWDENYGA
                     SAQRNGPNIPLSLTSQTSVKFYYDHKSHWVTSNRNSVIATAAGSFQSELGCSADWAPD
                     CLRSWLQDPDGDGTYRFQTAALPAGDYWTKATINESWNENYGAGGAPNGSDIQFNVPA
                     NNAPVEFVYNASTHVLTVVNLTGDVQWDGLRHDTFDPYYRNPFGAVAAGTTVTLRFRT
                     IPNDVTGVDVRIYNYNPATGETAPAADHAMTYLEDRDEGGTTYAIWQLQLTTPSSPAI
                     LYYKFEVTDGTDTDFYSDAYSDDHDNLGQGGEGAASDGEPFPAFQLTVYDPAFQTPAW
                     LQNANVYQIFPDRFRNGDTSNDYCREGSLVGCPEFYGGDQIFARTIWNEAIGDPRQPG
                     PFQNAYGTQFYGGDLRGIRQQLDYLQSVGVDTIYLNPIFKAKSNHRYDTDNFLEVDPA
                     LGGDAALAELVAAMNARGMRLILDGVFNHSSSDSLYFDRFHHYPTDGGCESLSSPYRS
                     WYRFITPNVPCGNGDYNSWFGFDALPVFDNSKAEVRDFFYRSASDNVTKHWYDRGASG
                     WRFDVATDLGHNWWNDYRPYAKTYSPEGPLVGEIWEDASSYLAGDQLDSVMNYRFRKN
                     VLGFARGQADWGDNDNSGDRRIIALSPSQFDHALRAVREDYPEPATRAMLNLIDSHDT
                     NRALYTLTISGDTGLNEAKERLRLAALFQFTYVGAPMVYYGDEAGLNSPSLANGPNGP
                     EDDPYNRAPYPWADEAGDPSVYGPADAGLKGFYSTLARLRKLHEALRTGSFETLLTGD
                     TTGSTTDNNTYAFAREGGGETVVVVLNNGAASNSAEVPVPFADGTVLYDALDQPNSYT
                     VGGGKITISLGARSGAVLLSSVPGDLTPPVITCPANVEQFATLNSAAVVNYSVSASDE
                     TSGVTITSSRPSGTAFPVGTTTVSVTATDAAGNRATCSFKVTITYNFSGFFPPVENPP
                     TYNT"
BASE COUNT          539 a         1042 c         1339 g          653 t
ORIGIN      
        1 cgtgttgtag gtcggcgggt tctcgacggg cgggaagaag cccgagaagt tgtaggtgat
       61 cgtcaccttg aaggagcacg tggcgcggtt gccggcagcg tccgtagccg tgacgctcac
      121 ggtggtcgtg ccgacgggga atgccgtccc cgaagggcgg ctcgaagtga tggtgacgcc
      181 cgaggtctcg tccgacgccg agaccgagta gttgacgacg gccgcggagt tgagcgtcgc
      241 gaactgctcg acgttcgcag ggcaggtgat gacgggcggc gtcaaatcgc ccggcaccga
      301 cgagagcaac accgcgccgg agcgcgcgcc gagcgagatg gttatcttcc cgccgccgac
      361 agtgtagctg ttaggctggt cgagggcgtc gtagagcacc gtgccgtcgg cgaacgggac
      421 ggggacttcg gccgagttcg aggcggcgcc gttgttgagc acgacgacca cggtctcgcc
      481 gccgccctct cgcgcgaagg cgtaggtgtt gttgtcggtg gtcgagccgg tcgtgtcgcc
      541 cgtgaggagc gtctcgaagg agccggtgcg cagcgcctcg tgcagcttgc gcagtcgcgc
      601 gagcgtcgag tagaagccct tcagccctgc gtcggccggg ccgtaaacgg aggggtcgcc
      661 ggcctcgtcg gcccacgggt agggcgcgcg gttgtagggg tcgtcctcgg ggccgttcgg
      721 gccgttggcg agcgagggcg agttcaggcc cgcctcgtcg ccgtaataga ccatcggcgc
      781 gccgacgtat gtgaactgga agagcgccgc aagcctcagc ctctccttcg cctcgttgag
      841 ccccgtgtcg cccgagatgg tcagcgtgta gagcgcgcgg ttcgtgtcgt gcgagtcaat
      901 gaggttgagc atggcgcgcg tggccggctc ggggtagtcc tcgcgcacgg cgcgaagggc
      961 gtggtcgaac tggctggggc tgagcgcgat gatgcggcgg tcgcccgagt tgtcgttgtc
     1021 gccccagtcc gcctgccccc gcgcgaagcc gagcacgttc ttgcggaagc ggtagttcat
     1081 cacggagtcg agctggtcgc ccgccaggta gctgctcgcg tcctcccaga tttcgccgac
     1141 gagcgggcct tcggggctgt aggtcttagc gtagggcctg tagtcgttcc accagttgtg
     1201 gccgaggtcg gtcgcaacgt cgaagcgcca gcccgacgcg ccgcggtcgt accagtgctt
     1261 cgtcacgttg tcggaggccg agcggtagaa gaagtcgcga acctcggcct tcgagttgtc
     1321 gaagacgggc agggcgtcga agccgaacca cgagttgtag tcgccgttgc cgcacggcac
     1381 gttcggcgtg atgaacctgt accaagagcg gtagggcgaa gagagcgact cgcagccgcc
     1441 gtccgtgggg tagtggtgga agcggtcgaa gtagaggctg tcggacgacg agtgattgaa
     1501 gacgccgtcg agtatgaggc gcatgccccg cgcgttcatc gcggcgacca gctcggcgag
     1561 cgcggcgtcg ccgcccagcg ccgggtcaac ctcgaggaag ttgtcggtgt cgtagcggtg
     1621 gttcgacttc gccttgaata tcgggttcag gtagatggtg tcaacgccca cggactgtag
     1681 gtagtcgagc tgctggcgga tgccgcgcag gtcgccgccg tagaactgcg tgccgtaggc
     1741 gttctggaag gggccgggct ggcgcgggtc gcctatggcc tcgttccaga tggtgcgcgc
     1801 gaaaatctgg tcgccgccgt agaactcggg gcagccgacg agcgagccct cgcggcagta
     1861 gtcgttcgag gtgtcgccgt tgcggaagcg gtcggggaaa atctgataga cgttggcgtt
     1921 ctgtagccac gcgggcgtct ggaaggccgg gtcatagacc gttagctgga aggccgggaa
     1981 gggctcgccg tccgaggccg cgccctcgcc gccctgtccg aggttgtcgt ggtcgtccga
     2041 gtaggcgtcg ctgtagaagt cggtgtcggt gccgtccgtg acctcgaact tgtagtagag
     2101 gatggcgggc gacgagggtg tcgtgagctg caactgccag atggcgtagg tcgtgccgcc
     2161 ctcgtcgcgg tcttccaggt acgtcatcgc gtggtcggcg gcgggcgcgg tctcgccggt
     2221 cgcggggttg tagttgtaga tgcgcacgtc aacgcccgtc acgtcgttgg ggatggtgcg
     2281 gaagcgcagc gtgactgtcg taccggccgc gacggcgccg aatgggttgc ggtagtaggg
     2341 gtcgaaggtg tcgtggcgca ggccgtccca ctggacgtcg ccggtgaggt tgacgaccgt
     2401 gagcacgtgc gtcgaggcgt tatagacgaa ctcgacgggc gcgttgttcg caggcacgtt
     2461 gaactgtatg tccgagccgt tcggggcgcc gcctgcgccg tagttctcgt tccacgactc
     2521 gttgatcgtc gccttcgtcc agtagtcgcc ggcgggcagc gccgcggtct ggaagcggta
     2581 ggtgccgtcg ccgtccgggt cttgcaacca cgagcgcagg cagtccggag cccagtcggc
     2641 cgagcagccc agctcggact ggaagctgcc ggccgcggtg gctatgaccg agttcctgtt
     2701 gctcgtcacc cagtggcttt tgtggtcgta gtagaacttg accgacgtct gcgaggtgag
     2761 cgagagcggt atgttcgggc cgttccgctg cgcgctcgcg ccgtagttct cgtcccaact
     2821 gttgttgagc ggcgccttat actcccagtt gcccgccggg acgttgaaga cgccctgcca
     2881 cacgtcgtcg ttggcgtcgt agctcaggtg cgtgttggcg cagttgggct gccagtcgcc
     2941 cgagcagccc agctcgtctt gcaggctgcc ggcgatggtc acgctcgaag ggcccgcggt
     3001 gtggttggcg agggccgcgg gcgtgccggg gcgcgagacc aagccggcgg ccacggcgca
     3061 gcagagtgct atcagggcgt agaagcgtct ggggcttttc attctttttc cttcagggac
     3121 gaacgcgtgc gaagctgctc tcgggccggc cgcaaaagat tgttcggcga acgaacaatc
     3181 cccgcgggcg tgactaatcc ccggcagggg ttttcacctt cgttcgagcc tgcgagagct
     3241 gatttaaggt taaaaattca aggattgcgg cggcgttctt aacttccggg gctgcacgcg
     3301 gaagtgaggg cgaaggatac agccccgcgc ttgcataagt caaacgggca atggcttggg
     3361 gccgcgggcc gcgggccgcg ccggagcaac ccgcgccggg gcaatagctt ttcgtggaac
     3421 tttccggcgg cgcggcgcga attaggggtg tcggcgctcg acggagagag atttcggagc
     3481 agaggatgtc ggcttcccag acccccagcg acgcggagct gctgcggctg atgctcgcag
     3541 gcgacgaggc gtcattcgcc gcgctctaca ggc
//
LOCUS       DASPKR010000562         4249 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_84822, whole genome shotgun sequence.
ACCESSION   DASPKR010000562 DASPKR010000000
VERSION     DASPKR010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4249)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4249
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84822"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..528)
                     /locus_tag="VD968_15105"
     CDS             complement(<1..528)
                     /locus_tag="VD968_15105"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HYE15770.1"
                     /translation="MLEDLSNYHEPVGRLFPRPASREEWGQYRLSREQVEFYRANGYL
                     AGVRVLDDSQVEALRAELKELVRPDHPKRRLWYEFHSNESGDEGRVLFHALGAWRISK
                     GFHDLLWNPRFTVPAAQLLGGAVRFWHDQLFCKPAKHGGVVAWHQDYSYWTRTEPMAH
                     LTCWIGLDDTDRKNGC"
     gene            609..1190
                     /locus_tag="VD968_15110"
     CDS             609..1190
                     /locus_tag="VD968_15110"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HYE15771.1"
                     /translation="MRALTLSVIIPTTGQPSLRRTLASVGEQELVPGDEVLLVCDGHY
                     PEAAEAWRASGLPGECVEIDGPHGDWGSAARTEGLSRARGDFIAYMDDDDIYAPGAFE
                     TVRAILAENPELPHMFRMRYGGTQSCLWRSPEVEMGNVGTPMFLHPNGGRWGRWGARY
                     ECDFDFIASTAALFPRVVWREEVIAIIRPPAGG"
     gene            complement(1223..2164)
                     /locus_tag="VD968_15115"
     CDS             complement(1223..2164)
                     /locus_tag="VD968_15115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15772.1"
                     /translation="MSQLSKIVALAALFSLVALSSAPDAFAQRRPRGSQQRPRGTPVL
                     WRERAAESLDLYAGPGGRGGRPNLRRLTFIEEEKGGFSTKYRVRDASGRVWVAKVGKE
                     AQSETAATRLLWAAGYMTEITYLAPRAVIPGKGTFRNVRFEARPAGVRRAGEWKWDEN
                     PFVGTREFQGLKVMMVLLNNWDIKDSNNVILAEGGELRYAISDLGATLGDTGKWPLLW
                     RFTRSRNDPEGFGGDKIIDEVKDDGRVDFEFSGKKRGMFNDITVEQARWIGHVLSRLS
                     DRQLDDAFRAANYTRAERRTLVGAVRSRINQLTSLRP"
     gene            complement(2277..3125)
                     /locus_tag="VD968_15120"
     CDS             complement(2277..3125)
                     /locus_tag="VD968_15120"
                     /inference="COORDINATES: protein motif:HMM:NF014651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HYE15773.1"
                     /translation="MELLRALAVLAEPPGGEGAARLAVALGLGPPPGESEHAELFDFQ
                     LYPYASVYLGAEGMLGGEARSRVAGFLSALGIEPAPEPDHLSTMLALHARLAEADSSA
                     GGRWRAARRAHLWEHLLSWLPLYLDKLAEIAPPFYKGWAELLSEALAEEARIVGRQES
                     LPLHLREAPRAADPRAVGAEELLRSLLAPARSGMIIVRSDLARGARTLGLGVRAGERA
                     FALKSLLGQDAEGALGWLASEARGWAGRHARRRELLGGVAEWWSERAAATASLLEELR
                     DEGRAV"
     gene            complement(3149..>4249)
                     /locus_tag="VD968_15125"
     CDS             complement(3149..>4249)
                     /locus_tag="VD968_15125"
                     /inference="COORDINATES: protein motif:HMM:NF013717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HYE15774.1"
                     /translation="VPGLPERAAAEGLTPLEFMRRYGAFEVSRKVGAVYEQEVPGEEL
                     DDVRVDRFGRAYTRKPKPAGPNIVPIPTPDDDAEGRRLVGVSMGDRVLRGFPTPSGRL
                     EFYSKTLADWGWHEYAVPAYIKSHVHPDKLNPDQSVLISTFRLPVQIHTRSANSKWLD
                     EIAHTNPLWVHTSHARELGVSTGDLVRVETETGHFVVRAWVTEGIRPGVVACSHHMGR
                     WKLAREGEGQRQLMATVALDRRGSEWAMRRERGAAPYESSDPDTTRIWWADVGVHQNL
                     TFPVHPDPVSGMHCWHQAVRVRKAEPGDSAGDIFVDTEKSRAVYRAWLQFTRPADTHS
                     PDGTRRPYWLLRPLKPSRQVYRLPEEEVLSGK"
BASE COUNT          623 a         1491 c         1471 g          664 t
ORIGIN      
        1 gcagccgttc ttccgatccg tgtcgtcgag gccgatccag cacgtcagat gggccatggg
       61 ctcggtgcgc gtccaatagg aatagtcctg atgccaggcc acaacgccgc catgctttgc
      121 tggcttgcag aagagctggt catgccagaa gcgcacggcg ccgcccagga gctgcgcggc
      181 gggaacggtg aagcgcgggt tccagagcag gtcgtggaag cccttcgaga tgcgccaggc
      241 cccgagagcg tggaagagca cgcgaccctc atcgccagac tcgttcgagt gaaactcgta
      301 ccagagccgg cgcttcgggt ggtcgggccg caccaactct ttcagctccg cgcgcagcgc
      361 ctcgacctga gagtcgtcga gcacgcgcac gcccgcgagg tagccgttcg cgcggtagaa
      421 ctcgacctgc tcacggctca ggcggtactg cccccactcc tcgcgcgacg ccggccgcgg
      481 gaagagccgc cccaccggct cgtggtagtt tgaaaggtct tcgagcatcg cggctcagat
      541 aatacgcccg gcggggttat catcaacagc ccgcgcggcg cagtcgcttt cgggattgga
      601 ggacgaacat gagggcgctg actttgtcgg tcatcatccc gacgacgggg cagccgtcgc
      661 tgcggaggac gctcgcgagc gtcggcgaac aggagctcgt ccccggcgac gaggtgctgc
      721 tcgtctgcga cggccactac ccggaggccg cggaggcttg gcgagcctcg gggctgccgg
      781 gcgagtgcgt cgagatagac gggccgcacg gcgattgggg ctccgcggcc cgcaccgagg
      841 ggctgtctcg cgcgcgcggc gacttcatcg cctacatgga cgacgacgac atctacgcgc
      901 ccggcgcctt cgagactgtt cgcgcgattc tggcggagaa ccctgagctg ccgcatatgt
      961 tccgcatgag gtacggcggc acgcagagct gcctctggcg gagcccggag gtcgagatgg
     1021 ggaacgtcgg gacgccgatg ttcctgcacc cgaacggcgg gaggtggggc cgttggggag
     1081 cccgctacga gtgcgacttc gacttcatag cctcgaccgc ggccctcttc ccacgcgtcg
     1141 tgtggcgcga ggaggtgatc gccatcatac gcccgcccgc cggcggctga aggctgccac
     1201 cggccgccgg gagagccggc cgctacgggc ggaggctcgt gagctggttt atccgcgagc
     1261 ggacggcgcc gacgagcgtg cggcgttcgg cccgcgtgta gttggcggcg cggaaggcgt
     1321 cgtcgagctg ccggtcggag aggcgcgaga gcacatggcc gatccagcgc gcctgctcga
     1381 ccgtgatgtc gttgaacatc cccctcttct tgccggagaa ctcgaagtca acgcgcccgt
     1441 cgtccttcac ctcgtctatt atcttgtcgc cgccgaagcc ctccgggtcg ttgcggctcc
     1501 gcgtgaagcg ccacagcaga ggccacttgc ccgtatcccc gagcgtggcc cccaggtcgc
     1561 tgatcgcgta gcgcagctcg ccgccctctg cgagtatgac gttgttagag tctttgatgt
     1621 cccagttgtt caggagcacc atcatcacct tcagcccctg gaactcgcgc gtgccgacga
     1681 aggggttctc gtcccacttc cactcgccgg cgcggcggac gcccgcgggc cgcgcctcga
     1741 agcggacgtt gcggaaagtc cccttgccgg gtatgacggc gcgcggcgcg aggtaggtaa
     1801 tctccgtcat gtagccggcg gcccacagca gcctcgtcgc ggccgtctcg ctctgcgcct
     1861 ccttgcccac cttcgccacc cacacgcgcc ccgacgcgtc gcgcacgcgg tacttcgtcg
     1921 agaagccgcc cttctcctcc tctatgaagg tgagccgccg caggttcggg cggccgcccc
     1981 tcccgcccgg ccccgcgtag aggtcgagcg actctgcggc gcgctcgcgc cagagcacgg
     2041 gcgtcccgcg cggccgctgc tggctgcccc tgggcctcct ctgcgcgaag gcgtcgggag
     2101 cggatgacaa cgcgacgaga ctgaacagcg cggcgagcgc gacgatcttg ctgagttggg
     2161 acatctcgcg catctcctcc tgtctgattt tttttagcgg ggggacagac gggatagtac
     2221 caattcgctc ttttcttcgc caagccggcg cccgccgccg aactttctcc gaccgctcag
     2281 acggcgcggc cttcgtccct caactcttcg aggagcgagg ccgtcgccgc ggcgcgctcc
     2341 gaccaccact ctgctacgcc gcccagcagc tctcggcgcc tcgcgtggcg cccggcccag
     2401 ccgcgggctt ctgaagcgag ccagcccagc gccccttcgg cgtcctgccc cagcagagac
     2461 ttcagagcga aggcgcgctc gccggccctc accccgagcc cgagcgtgcg cgcgccgcgc
     2521 gcgaggtctg acctgacgat tatcatgccg ctccgcgcgg gcgcgagcag cgagcgcagt
     2581 aactcttccg cccccacggc gcgcgggtct gccgcccgag gcgcctcgcg gaggtgcagc
     2641 ggcagagact cctggcgccc gacgattcgt gcctcttcgg cgagcgcttc cgaaagaagt
     2701 tcggcccagc ccttgtagaa cggcggcgcg atctccgcca gcttgtcgag gtagaggggg
     2761 agccagctaa gcaggtgctc ccacaggtgc gccctccgcg ccgcgcgcca gcgccccccg
     2821 gccgaagagt cggcctccgc gagccgcgcg tgcagcgcga gcatcgtaga gaggtggtcg
     2881 ggctccggcg ccggctcgat gcccagcgcc gagaggaagc ccgccacgcg cgagcgcgcc
     2941 tcgccgccca gcatgccttc ggcgccgaga tagacggaag cgtaagggta gagttggaag
     3001 tcgaagagct ctgcgtgctc gctctcgccc ggcggcggcc cgagcccgag cgcgacagcc
     3061 agccgcgccg cgccctcacc gcccggaggc tcggccaaca cagcgagcgc gcgcagaagc
     3121 tccatggcag ggccgccccc gaagcgggct acttaccgct caacacttcc tcttcgggca
     3181 ggcgatagac ctgccgggag ggcttgaggg ggcgcagcag ccagtagggg cggcgcgtgc
     3241 cgtcgggcga gtgcgtgtcg gcggggcgcg tgaactgtag ccaggcacga tagacggcgc
     3301 gcgacttctc tgtgtcaacg aagatgtcgc cggccgagtc gcccggctcg gccttgcgga
     3361 cgcgcacggc ctggtgccag cagtgcatcc ccgagacggg gtctgggtgg acggggaagg
     3421 taaggttctg gtgcacgccc acgtcggccc accatatgcg cgtcgtgtcg gggtcggagg
     3481 attcgtaggg cgcggctccg cgctcgcggc gcatggccca ctcgctgccg cgccggtcca
     3541 gcgcgacggt cgccatgagc tgccgctgcc cttctccttc gcgcgcgagc ttccatcggc
     3601 ccatgtggtg gctgcaagcg acgacgccgg gccttatgcc ttccgtcacc cacgcgcgca
     3661 cgacgaagtg gcccgtctcg gtctctacgc gcacgaggtc gccggtcgag acgcccagct
     3721 cgcgcgcgtg gctggtgtga acccacaaag ggttggtgtg cgcgatctcg tcgagccact
     3781 tcgagttcgc gctgcgcgtg tgaatctgca cggggaggcg gaaggtggag atgagcacgg
     3841 actggtcggg gttgagcttg tccgggtgga cgtggctctt gatgtaggcc ggcaccgcgt
     3901 actcgtgcca gccccagtcg gcgagcgtct tcgagtagaa ctcgagccgc ccgctcggcg
     3961 tcgggaagcc gcgcagcacc cggtcgccca tgctgacgcc gactaagcgg cgcccttccg
     4021 cgtcgtcgtc gggcgtcggg atggggacga tgttaggccc cgccggctta ggcttccgtg
     4081 tgtacgcgcg gccgaagcgg tcaacgcgca cgtcgtctaa ctcttcgccg gggacttcct
     4141 gctcatagac ggcgcccacc ttgcggctca cctcgaaggc gccgtagcgg cgcatgaact
     4201 caagtggcgt caggccctcg gccgcggccc gctcgggcag gcccggcac
//
LOCUS       DASPKR010000563         6335 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1379702, whole genome shotgun sequence.
ACCESSION   DASPKR010000563 DASPKR010000000
VERSION     DASPKR010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6335)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6335
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1379702"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1838)
                     /locus_tag="VD968_15130"
     CDS             complement(<1..1838)
                     /locus_tag="VD968_15130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15775.1"
                     /translation="MAHPARLHSLVLCLSFVVSPASALARQQPGAAPARAKQKAPASK
                     KASAEVDPMAEVRRNAAVSLVNSLADDARMFRDPVLRARVQARSADALWEADRERAVA
                     LFRRAWDEAETVDAEQGQQRAREASRRGSPSSREAGSVRREVLRLAARRDSVLGNEFL
                     TRFDESKKQEATASTPAATSGPATSQGQPFNPDDPPSAMTQRLALARELIRDGDTERA
                     VTFAAPALYPVNTFGMNVLDELRRKDAATADKLYAALLPRAASDPASDANTVSLLASY
                     VFTPLLYVTVRPDGNSHTRRFGPQTIPEGLDPKLRAAYLNVGAQILLRPVPTPDQDRT
                     TSGRVGTYVIITRLLPLFDQFAPDKAPALRARQSLLEQDTPERSRRTDDPLFTRGIVP
                     EDPNRDGVAEALSRLEKAKDANERDMIYFRAAMEASRKDLERAREYANKIEDTDTRRQ
                     LLAALTFQAVNEAVRGKRAEEVLRLSRSPELTDVQRAWALTEGARLLVKTDPGRAVEA
                     LDQAAEEARKIDDASPDRVRAFIAVATQLVELDRGRAWEMMNEVVKASNALPEFTGEE
                     GSLTVRVEFKSGGAMTNNINVESFDLTGIFAALAREDFDRAANLARS"
     gene            complement(2073..2639)
                     /locus_tag="VD968_15135"
     CDS             complement(2073..2639)
                     /locus_tag="VD968_15135"
                     /inference="COORDINATES: protein motif:HMM:NF020295.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HYE15776.1"
                     /translation="MPKIDNIEETPNPNAVKFILKEPVTSGTTRSFHSAEEAAADPLG
                     RALFEVGEVASVFYMDRMITVEKEEEADWDDLLPRLAVPIRAAEAVTANGGAGAEAAG
                     VGGPLGAMMSDDPRLLQINEILDERIRPALAGDGGWLEVLSLADNTLTIRYQGACGSC
                     PSSLSGTLMAIEGMIKQEVDPEIEVVAV"
     gene            3133..4278
                     /gene="bshA"
                     /locus_tag="VD968_15140"
     CDS             3133..4278
                     /gene="bshA"
                     /locus_tag="VD968_15140"
                     /inference="COORDINATES: protein motif:HMM:TIGR03999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071793 - bacillithiol biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-alpha-D-glucosaminyl L-malate synthase
                     BshA"
                     /protein_id="HYE15777.1"
                     /translation="MNIGITVYPTYGGSGIVGSELGKELAERGHTVHFISSALPTRLT
                     QLSERVRFHEVEMMSYPLFEHQPYTLALATKMADVAETENLDLLHVHYAIPHSISAIL
                     ARESLKPHRLLPVITTLHGTDITLVGADRSYLPITRYGIAQSDGVTAVSNYLKRATAD
                     LFQFEHIAVIPNFICASDYKRKFSEALRRELAPDGEPLLAHVSNFRPVKRPVDCVDIL
                     ARVRGRGVGARLVMVGDGSERARAEHRARCLGVESYCSFVGKQPRIADYLSVADVLLL
                     PSEQESFGLAALEAMACEVPVIASRVGGIPEVVDDGVTGCLAEVGDVEKMSDDAARLL
                     SDDAARREMGARARDSAVSRYSTDLVIPQYIDFYERVIAASKENAPG"
     gene            4289..5029
                     /locus_tag="VD968_15145"
     CDS             4289..5029
                     /locus_tag="VD968_15145"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15778.1"
                     /translation="MSTAAQGARARRAKAAPTPEEWAARVSEEKPVGYVIQNLERAYG
                     VPENKWTDWDVLDMLVAVILSQATSDANSDRTYDALKKRFPTWGAVLRAREKTLADTI
                     RLGGLANQKARVIRDLLAQVKARHGSLDLSFVKGMPAEEAARYLSGFRGVGPKTVACT
                     LLFACGMGVFPLDTHIFRVLRRVGLIPAKCSDEFAHRVMNRVVPAGKSYSFHVNLIRH
                     GRKLCRPREPLCERCPIVEYCDYGQTRI"
     gene            complement(5127..>6335)
                     /locus_tag="VD968_15150"
     CDS             complement(5127..>6335)
                     /locus_tag="VD968_15150"
                     /inference="COORDINATES: protein motif:HMM:NF027637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HYE15779.1"
                     /translation="LGLRHNFRASNLHTNDKLQDTALTNEQGLTGSVMDYTPVNIAPK
                     GTKQGQHWQTTLGTYDLWAIEYAYKPIAASSPEAERAELNKIASRVADAKLAYGTDED
                     VFGNDPIGIDPRTNRWDFASDPLPWYETRTKLVHELWGNLESKLEQPGKRYQKLRFAF
                     NGAFGELALAMMSASKYVGGIYHNRDHIGDPGNRSPYVPVPAKDQRRALELLKTNAFG
                     PDAFKFSPRLLNKLAIDRDWTFEGDVWRVQRLDYPVHQRVLALHRGLLDRLFHPILLS
                     RLQDLEVKYENRRDAFTMSELFQGLQDSIWSELKAPGGAVEVNSFRRNLQREHLKRLQ
                     RLVLRQDPVTPEDASTLARYNLTQMRAQIKQALLVGGKRMNTMTRAHLQETAARIDET
                     LNAQQQRVVN"
BASE COUNT          946 a         2057 c         2210 g         1122 t
ORIGIN      
        1 gagcgcgcga ggttggcagc gcggtcgaag tcctcgcgcg ccagcgccgc gaagatgccc
       61 gtcaggtcga agctctccac gtttatgttg ttcgtcatcg ccccgcccga cttgaactcg
      121 acgcggacgg tcaggctgcc ctcctcgccc gtgaactccg gcaaggcgtt ggaagccttg
      181 acgacctcgt tcatcatctc ccaggcgcgc ccgcggtcga gctcgacgag ctgcgtggcg
      241 acggctatga aggcgcgcac gcggtcgggc gaggcgtcgt caatcttgcg cgcctcctcg
      301 gccgcctggt cgagcgcctc gacggcgcgg ccggggtcgg tcttgaccag caggcgcgcg
      361 ccctcggtga gcgcccatgc cctctgcacg tcggtcagct cgggcgagcg cgagaggcgc
      421 agcacctcct cggcccgctt cccccgcacg gcctcgttca cggcttggaa ggtgagggcg
      481 gcgaggagct ggcggcgcgt gtcggtgtcc tcgatcttgt tggcgtactc gcgtgcgcgc
      541 tccaagtcct tgcgcgacgc ctccatcgct gcgcgaaagt agatcatgtc gcgctcgttg
      601 gcgtccttcg ccttctcgag ccgcgagagc gcctcggcta cgccgtcccg gttcgggtct
      661 tcggggacga tgccgcgcgt gaacagcggg tcgtccgtgc ggcgcgagcg ctcgggcgtg
      721 tcctgctcaa ggagcgactg gcgcgcgcgc agcgcgggcg ccttgtcggg cgcgaactgg
      781 tcgaagagag gtagcagccg cgtgatgatg acgtaggtgc cgacgcggcc cgacgtggtg
      841 cggtcttgat caggcgtcgg cacggggcgc agcagtatct gcgcgccgac gttaaggtag
      901 gccgcacgca gcttcgggtc tagaccttcc gggatagtct gcgggccgaa gcggcgggtg
      961 tggctgttgc cgtccgggcg cacggtgacg tagagcagcg gcgtgaagac gtagctggcg
     1021 agcagcgaga cggtgtttgc atccgacgcg gggtcggagg cggcgcgcgg caggagagcg
     1081 gcgtagagct tgtcggcagt ggcggcgtcc ttgcggcgca gctcgtcgag cacgttcatg
     1141 ccgaaggtgt tgacggggta gagcgcgggc gcggcgaagg tcacggcgcg ctctgtgtcg
     1201 ccgtcccgga ttagctcgcg cgctagcgcg agccgctgcg tcattgccga gggcgggtcg
     1261 tcggggttga agggctggcc ttgtgacgtg gcggggccgg aggtcgcggc cggcgtcgag
     1321 gccgtggcct cctgcttctt cgactcgtcg aagcgcgtga ggaactcgtt gccgagcacg
     1381 ctgtcgcggc gggcggcgag ccgtaggact tcgcggcgga cgctgcctgc ctcgcgcgac
     1441 gagggcgagc cgcggcgcga ggcttcgcgc gcacgctgct ggccctgctc ggcgtcaacc
     1501 gtctcggcct cgtcccatgc gcggcggaag agcgccaccg cgcgctccct gtcggcctcc
     1561 cacagcgcgt ctgccgagcg ggcctgcacg cgggcgcgca gcaccgggtc tcggaacatg
     1621 cgagcgtcgt cggccagaga gttcacgagc gagacggcgg cgttgcgcct cacttcggcc
     1681 atcgggtcaa cctcggccga agccttcttc gacgcgggcg ccttctgttt tgcacgggcc
     1741 ggcgccgccc ccggctgctg ccgagcgagg gccgaggccg gcgagacgac gaaggacagg
     1801 cagagcacga gcgagtgcag gcgggcaggg tgagccatct gttgtctccc gtccgcgcgt
     1861 ggggcgcgcg gacataagct ttcggttgac cgtttagacg cgggcggcgg gccgcgtctc
     1921 acgtcaggcg cggcccgcgc tcagcgggac tgaagatgta ggtgtaaacg tgccgcgcgc
     1981 gattcggttc ccgaaaattc gcgggcgggg agaaaaaagc gggcggcgcg ccgccattgt
     2041 aacagcgcgc cgccccgtga tttgagaaat tttcagacgg cgacgacttc gatctccggg
     2101 tcaacctcct gctttatcat cccctcgatt gccatcagcg tccccgacag agagctcggg
     2161 cagctcccgc aagcgccctg gtagcgaatc gtcagcgtgt tgtcggcgag cgagagcact
     2221 tcgagccatc cgccgtcgcc cgcgagcgcg ggccgtatgc gctcgtcgag tatctcgttt
     2281 atctgcaaga gccgcgggtc gtcgctcatc atcgcgccga gcgggcctcc gaccccggcc
     2341 gcttcagcgc cggcgccgcc gttggccgtc actgcttcgg ccgcgcgtat ggggactgcg
     2401 aggcgcggga gcaggtcgtc ccagtcggcc tcctcctcct tctcgaccgt aatcatcctg
     2461 tccatgtaaa agacggatgc gacctcgcct acctcgaaga gggcgcgccc gagcgggtct
     2521 gcggcggcct cctcggcgct gtggaacgag cgcgtcgtcc ccgaggtgac cggctccttg
     2581 agtatgaact tgacggcgtt cgggttcggc gtctcttcga tgttgtctat tttcggcatc
     2641 ttttatcttc ctggcactct gctttggtat aaaaactcac cccttcgcgc gaactttcca
     2701 ccgaatacgt tattcagctt ttggtcgcat tataaacctt ttcccggcgc ggcgcagttc
     2761 gcgccggcgt gaagcaattt gatgccgcgc gagcccgcgg cgtgcgcccg taaacggtgc
     2821 agtaacacag gttcgtctcg gcccggcggc ggcccaaaaa aaatgctttc ggcggaagat
     2881 ttaaattgcc aaaaaaggaa agtaggcgta tattctaggc cctcgcttgt ccccccttcg
     2941 caggtgagac aagttgagac gagaggcaga cgatagcgag ggtcgtctgc ctcttgctat
     3001 attcagcggt cggcaatcag cattcagctt tcagctttgc ccgcgcgggg cctcccggcc
     3061 tccgactcgc ggctcaaggg ctggaaggaa tcaaaagctg atggctgacc gctgactgct
     3121 tagagcttct ttatgaatat agggatcacc gtatatccga cttacggcgg gagcggcatc
     3181 gtgggctccg agctggggaa ggagctggcc gagcggggcc acacggttca cttcatctcg
     3241 tcggcgctgc ccacgcggct cactcagttg agcgagcgcg tcaggttcca cgaggtcgag
     3301 atgatgtcct acccgctctt cgagcaccag ccctacacgc tcgcgctcgc gactaagatg
     3361 gccgacgtgg ccgagacgga gaacctcgac ctgctgcacg tccactacgc catcccgcac
     3421 tcgataagcg ccatactcgc gcgcgagtcc ttaaagccgc accggctgct gcccgtcatc
     3481 acgaccctgc acggcacgga cataacgctc gtcggcgccg accgctccta cctgccgatt
     3541 acgcgctacg gcatcgcgca gtccgacgga gtaaccgccg tctcgaacta cctgaagcgg
     3601 gcgacggccg atctcttcca gttcgagcac atcgccgtca taccgaactt catctgcgcg
     3661 tccgactaca agcggaagtt ctccgaggcg ctgcgccggg agcttgcgcc cgacggcgag
     3721 ccgctgctcg cgcacgtctc taacttccgc cccgtcaagc ggcccgttga ctgcgtggac
     3781 attctggcgc gcgtgcgcgg gcggggcgtc ggggcgcggc tcgttatggt gggcgacggg
     3841 agcgagcgag cgcgcgcgga gcacagggcg cgctgcctcg gcgtcgagag ctactgctcg
     3901 ttcgtcggca agcagccccg catcgccgac tacctctcgg tcgcggacgt gctgttgctg
     3961 ccctcggagc aggagtcgtt cggtctcgcc gcgctcgaag cgatggcttg cgaggtgccg
     4021 gtcatagcct cgcgcgtggg cggcatcccc gaggtagtgg acgacggcgt gacgggatgc
     4081 ttggccgaag tgggcgacgt ggagaagatg agcgacgacg cggcgcgcct cctctcggac
     4141 gacgcggcgc ggcgcgagat gggcgcgcgc gcgcgcgatt cggccgtgag ccgctacagc
     4201 acggacctcg tcatcccgca gtacatagat ttctacgagc gcgtcatcgc cgcgtcgaaa
     4261 gagaacgcgc cgggctgagg agtcggcgat gagcaccgcg gcgcaaggcg cccgagccag
     4321 gagagcgaag gccgccccca cgcccgagga gtgggccgcg cgggtttcgg aagagaagcc
     4381 ggtcggctac gtcatacaga acctcgagcg cgcctacggc gtgccggaga acaagtggac
     4441 tgactgggac gtgctcgaca tgctcgtcgc cgtcatactc tcgcaggcga cgagcgacgc
     4501 caacagcgac cgcacctacg acgccctgaa gaagcgcttc ccgacctggg gcgccgtcct
     4561 gcgcgcgagg gagaagacgc tggccgacac gattcgcctg ggcggcctcg ccaaccagaa
     4621 ggcccgcgtc atacgcgacc tgctcgcgca ggtgaaggcg cggcacggct cgttagacct
     4681 ctccttcgtg aagggcatgc cggccgagga ggccgcccga tacctttcgg gcttccgcgg
     4741 cgtcggcccc aagacggtcg cctgcacgct cctgttcgcc tgcgggatgg gcgtcttccc
     4801 gctcgacacg cacatcttcc gcgtactccg gcgcgtcggc ctgatacccg cgaagtgctc
     4861 cgacgagttc gcgcaccgcg ttatgaaccg agtcgtcccc gccggcaagt cctactcctt
     4921 ccacgtcaac ctcatacgcc acggccgcaa gctctgccgc ccgcgcgagc ccctctgcga
     4981 gcgctgcccc atcgtcgagt actgcgacta cggccagacc aggatttgaa gccgccgcgc
     5041 aaaaagagag tgccgggctc gaacgttcga gcccggcact ctctttttat gggcggcccg
     5101 cgtttgaagg cgggcgagcc cgcctgttag ttgacgactc gctgctgctg ggcgttgagc
     5161 gtctcgtcta tgcgcgcggc cgtctcctgt aggtgcgcgc gcgtcatggt gttcatgcgc
     5221 ttgccgccca cgaggagcgc ctgcttgatc tgggcgcgca tctgggtcag gttgtagcgc
     5281 gcgagtgtgg aggcgtcctc gggcgtgacg gggtcttgcc gtaggacgag gcgctgtagg
     5341 cgcttcaggt gctcgcgctg taggttgcgg cggaagctgt tgacctctac cgccccgccc
     5401 ggcgccttaa gctccgacca tatcgagtcc tgtaggccct ggaacagctc cgacatcgtg
     5461 aaggcgtcgc ggcggttctc gtacttgacc tcgaggtctt gcaggcgtga gagcaggatg
     5521 gggtggaaga ggcggtcgag caggccgcgg tgcagcgcga gcacgcgctg gtggacgggg
     5581 tagtcgagcc gctgcacgcg ccacacgtcg ccctcgaacg tccagtcgcg gtctatggcg
     5641 agcttgttca gcaggcgcgg cgagaacttg aaggcgtccg gcccgaaggc gttcgtcttc
     5701 agcagctcca gcgcgcggcg ctggtctttg gccggcacgg gcacgtaggg cgagcggttg
     5761 ccggggtcgc ctatgtggtc gcggttgtgg tagatgccgc cgacgtactt gctggcgctc
     5821 atcatcgcca gcgccagctc gccgaacgcg ccgttgaagg cgaaccgcag cttctggtag
     5881 cgcttgcccg gctgctccaa cttggactcg aggttgcccc agagctcgtg gactagcttg
     5941 gtgcgcgtct cgtaccacgg cagcgggtct gaggcgaagt cccagcggtt cgtgcgcggg
     6001 tctatgccga tggggtcgtt gccgaacaca tcctcgtcgg tgccgtaggc gagcttggcg
     6061 tcggcgacgc gcgaggcgat cttgttaagc tcggcgcgct cggcctcggg gctcgaggcc
     6121 gcgatgggct tgtaggcgta ctcgatggcc cagaggtcgt aggtgccgag cgtggtctgc
     6181 cagtgctggc cctgcttggt gcccttcggc gcgatgttga cgggcgtgta gtccatgacc
     6241 gagccggtca ggccctgctc gttcgtgagc gccgtgtcct gcaacttgtc gttcgtgtgg
     6301 aggttgctgg cgcggaagtt gtggcgcagg ccgag
//
LOCUS       DASPKR010000564         5019 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1896555, whole genome shotgun sequence.
ACCESSION   DASPKR010000564 DASPKR010000000
VERSION     DASPKR010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5019)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5019
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1896555"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..831
                     /locus_tag="VD968_15155"
     CDS             <1..831
                     /locus_tag="VD968_15155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15780.1"
                     /translation="PLYFTQPLYSGLISKRRDVMHRLTKLIFLTLCGFGFGTSVLAQA
                     GQGPGALDDHGGWVVAAYVGGARTAASSLSVSQPELGNDLTFEGVRFRSRSFDPPLYY
                     GLRGSYFARRLPSLGIEAEFIHLKVFSNPQQRVRVAGLRRGLPVNGELPLGEIVQQYS
                     ISHGVNLLLFNVAARHGLGRNAKATGGWLVLTGRAGAGPTLPHTESSVEGRRQEQYEV
                     GRLGWQAAGGAELNLWRGLYLLGEYKFTRTRQRGKVFSGTAESLLRTHHGVFGLSYHF
                     "
     gene            1451..1936
                     /locus_tag="VD968_15160"
     CDS             1451..1936
                     /locus_tag="VD968_15160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15781.1"
                     /translation="MKLRKYDQHELEEAVKKATSLRQVLKILGVAPYGGNYEVLKRAL
                     RHFNLDTSHFTGQGWNKGKSLGPKQPLRRFLNNEIRIASFKLKNRLLAEGILKPQCSS
                     CGRTDWLNQPIPLELDHVNGNRSDNRLPNLRLLCPNCHALTPTYRGKNIAARLSSVLP
                     G"
     gene            2142..2645
                     /locus_tag="VD968_15165"
     CDS             2142..2645
                     /locus_tag="VD968_15165"
                     /inference="COORDINATES: protein motif:HMM:NF013629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HYE15782.1"
                     /translation="MTEEKAIFHQHIQREGLKRTAQRDLILDVFLRTEKHLSSEDLYS
                     LVKEEDPNVGHTTVYRTLKLLVEAGLAREVRFGDGRTRYEHNYKHPHHDHMICTECGR
                     TIEFYSEELEAIQDAIVARHKFRPTQHSLRIFGVCAQCQRKKGAGQPEDTAAEPRIRF
                     ASAPNTH"
     gene            2822..3412
                     /locus_tag="VD968_15170"
     CDS             2822..3412
                     /locus_tag="VD968_15170"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYE15783.1"
                     /translation="MGINVEWKDGGDGHRGIVAEGTYLWDAAKRLGVRLPAECGGRGE
                     CDTCAVIVEEGATLLSSLTDAERTRLSPERLAAGERLACQAKAELAGDLALKPVPVAE
                     RQETTEEAVRDIREEFRQMPLPKKVAALAEFEAVTLVHALDKLIDVPATLLTKGLDLL
                     AGRGRSLYQRERQAGRPAARGASTGKPDKPSGETAN"
     gene            3596..4465
                     /locus_tag="VD968_15175"
     CDS             3596..4465
                     /locus_tag="VD968_15175"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HYE15784.1"
                     /translation="MRRGEYFNSERALEHVKSLVGFGPRPAGSKALALSRRYIEKQLR
                     GVGLDVSTDEWTAETPAGKLRMANVIAELRGETEEAIIVASHYDTKRFKDFPFVGAND
                     GASSTAVLIEIARSLAVSREKRHFTYRFVFFDGEESVCADWDECGRPGAPDNTYGSRR
                     YVGRLRARNQLKNVRALVLLDMVGYEKLELGRETASTPWLIDIIWGTARSLGYGDIFL
                     EREEAVGGDDHEPFLAAGVPAVDIIQLETYPHWHTRDDTLDKISRRSLRVVGEVVLAS
                     LPRVEEKLKGGGL"
     gene            4499..4939
                     /locus_tag="VD968_15180"
     CDS             4499..4939
                     /locus_tag="VD968_15180"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HYE15785.1"
                     /translation="MLKATDILVPVDFSPTSINAVRVAVGIAEPGGDVTLLHVIDKDF
                     VEDAVAAGMGSSDEITAKLRELAEASFASALESVETGDVSVERMVVVGSPFVEILKIA
                     RDLDLPMIVMGVRGRSSQAEDLLFGSTAEKVLRGTRVPVLCVPF"
BASE COUNT          977 a         1590 c         1550 g          902 t
ORIGIN      
        1 cctctttact tcacacaacc attatattcc ggcttaatta gcaagcggag ggatgtgatg
       61 caccgtttaa caaaactgat ttttctcaca ctctgtggct tcggcttcgg tacgagcgtg
      121 ttagcacaag ccggacaagg cccgggagca ctcgacgacc acggagggtg ggtagttgcg
      181 gcttacgtcg gcggcgcacg cacggccgct tcctccctgt ccgtgtcgca gccggagtta
      241 ggcaatgacc tgaccttcga gggcgtccgc ttccggtcga ggtcattcga ccctcccctc
      301 tactacggcc ttcgcgggag ttacttcgcg cgccggttgc cctcgctcgg tatcgaagcg
      361 gagttcatcc acctgaaagt gttctcgaac ccgcagcaaa gagttcgagt cgccggcctg
      421 cgccgcggcc tcccggtcaa cggcgaatta ccactcgggg agatcgttca acaatactcc
      481 atctcgcacg gcgtgaatct tctgctcttc aacgtggccg cgcgccacgg cctggggcgt
      541 aacgcgaaag cgacaggcgg gtggttagtc ttgacggggc gcgccggggc cgggccgacg
      601 ttgcctcata ccgagagcag cgtcgaaggg cggcggcagg agcagtatga ggtggggcgc
      661 ttagggtggc aggcagcggg cggggcggaa ctcaacctgt ggaggggtct ctacctcctc
      721 ggcgaataca aattcactcg cacccggcag cgcggaaaag tattctcagg cacggcggaa
      781 tcgctcttgc gtacccatca tggcgtattc ggcctgagtt accacttctg agcgcgcccg
      841 acatcagcat gcaccccacc gcccttagct tggctttcat tcgtcagcta agatgcttgt
      901 tcagttaaat gcgcggcagg ccgggacagc aggaaggcat tatctcgggg agggtaagtc
      961 tgtagtatgc gggcgctacc ggacaggctc tacatataga tagacaaggg cggcctcata
     1021 tgtcttgccg cctttgcttt cggtgccgcg ttactttctc ggccccaaag cctttgcggg
     1081 aacgtgctca agtcgcctcg gcaaaggtcg cgagcaaggc ggcatacacg gctacgcgtc
     1141 agcatgacaa tgccactcgt ctccaagtcg cattccccgt cctgcgagag ctagggctac
     1201 aaatgaacaa gtccaaacgc gactgcgccg taaacatttt agcggcgcca cctatgtttg
     1261 agggttgata ccgggggcgg gactcgaacc cgcacggcct ttcggccaac ggattttctt
     1321 accactacgg ctttcgccgc ccgctcgaag tagcggtttg tggtctggac tataccttca
     1381 ccttttatta cgctcagggc gtaacagtca ggcgggggcc gtctagtctc tacactttcc
     1441 tggaggccgt atgaaactcc gcaagtatga tcaacacgaa ctcgaagagg cggtaaaaaa
     1501 agccacctcg ctcaggcagg tcttgaaaat tcttggcgta gccccctacg gggggaatta
     1561 cgaggtgttg aagcgagcgc tccgccactt caatctcgat acttcccact tcaccggaca
     1621 gggctggaat aaagggaaat cgctcgggcc gaaacaaccg ctacgaaggt tccttaataa
     1681 cgaaataagg atcgcctctt ttaaattgaa gaaccggctg cttgcggagg gaattctgaa
     1741 gcctcagtgt tctagctgcg gaaggactga ctggctaaat cagcctatcc ctttggaact
     1801 agatcacgtc aacggaaatc gctccgacaa tcggctgccc aacctgcggc tattatgccc
     1861 caactgtcat gcccttaccc caacctatcg cggcaaaaat atcgccgcca ggcttagctc
     1921 ggtgttgcca ggctaaaggg ttcaccgagt ttgaccccat tcacaccgga gatttcgccc
     1981 cgggtgctca aagaactaag tccgttgcgt ctgccatttc gccaccccgg cctgtgcggt
     2041 tttgaagata gcacggggcc gggcggggct caaaattcaa attcggggcg ggggcggcgt
     2101 gtgttagaat gcgcgaaagg tcgggatcgg ggcggcaggg catgacggaa gagaaggcga
     2161 ttttccacca gcacatacag cgcgagggcc tgaagcgcac ggcccagcgc gacctcattc
     2221 tcgacgtgtt cctccgcacc gagaagcacc tatcgagcga agacctctac agcctcgtaa
     2281 aggaagaaga cccgaacgtc ggccacacga ccgtctatcg cacgctcaag cttttggtcg
     2341 aggcgggcct cgcccgcgag gttcggttcg gcgacggccg cacgcgctac gagcacaact
     2401 acaagcaccc ccaccacgac cacatgatct gcaccgagtg cggccggaca atcgagttct
     2461 actcagaaga gctcgaagcc atacaggacg ccatcgtggc ccgccacaag ttcaggccca
     2521 cgcagcactc ccttcgcatc ttcggcgttt gcgcgcagtg ccagcgcaag aagggcgccg
     2581 gccagcccga agacaccgcc gccgagccgc gcatacgctt cgcctccgcc cctaacacgc
     2641 actgagaaga agcgatcagc aataagcggt cagcggtcag ctttttgtct tcgctgatag
     2701 ctgaatgctg attgctgacg gcttgttgcc gcttttgcct tttctccccc tttgatgtaa
     2761 tttccgaacg tcttccccgc gtgaaaaaat ttatccgtgc gtgacggtcg aggggcttct
     2821 tatgggcatt aacgttgagt ggaaggacgg cggcgacggc caccgcggca tagtcgccga
     2881 ggggacttac ctctgggacg ccgcgaagcg actgggcgtg cgtctgcctg ccgagtgcgg
     2941 cgggcgcggc gagtgcgaca cgtgcgccgt catagtcgag gagggcgcga cgctcctctc
     3001 atcgctgacc gacgccgagc gcacgcgcct gagccccgag cggctcgcgg ccggcgagag
     3061 gctcgcgtgc caggcgaagg cggagcttgc cggcgacctc gcgctcaagc ccgttcccgt
     3121 tgccgagcgg caggagacga ccgaggaggc cgtgcgcgac atacgcgagg agttccggca
     3181 gatgcctctg ccgaagaagg tcgccgcgct cgcagagttc gaggccgtga cgctcgtgca
     3241 cgcgctcgac aaacttatag acgtgccggc gacccttctg acgaagggtc tcgacctgct
     3301 cgcgggccgc ggccgctccc tgtaccagcg ggagcgccag gccggccgcc ccgccgcgcg
     3361 cggcgcctcg acaggaaagc ccgacaagcc ctcgggcgag accgccaact aaaccaagcg
     3421 gcgacgagaa cctcgtatgc gccgtcaagt ttccccccag agaccttccg gcagtcgcgc
     3481 gggcgccgtc ccgcggctca ctaaaacact cgccgccgtc ctgatcgccc acgcggccct
     3541 cgcggccgcg cacgcccagt cgggccgggc cggccggaaa acggaggccg agcccgtgcg
     3601 gcgcggcgaa tacttcaact cggagcgcgc cctcgagcac gtcaagagcc tcgtcgggtt
     3661 cggcccgcgc ccggccggct cgaaggcgct cgcgctctcg cgccgctaca tagagaagca
     3721 actccgcggt gtcggcctcg acgttagcac ggacgaatgg actgccgaga cgcctgccgg
     3781 caagctccga atggccaacg tcatcgcgga gctgcgcggc gagacggaag aggcgataat
     3841 cgtcgcgagc cactacgaca ccaagcgctt caaagacttc cccttcgtcg gagcgaacga
     3901 cggcgcctcc tcgacggccg tgctcatcga gattgcgcgc tcgctcgccg tctcccgcga
     3961 gaagcgccat ttcacctacc gcttcgtctt cttcgacggc gaggagtcgg tctgcgccga
     4021 ctgggacgag tgcgggcgcc ccggcgctcc cgacaacacc tatgggagcc gccgctacgt
     4081 cggccgcctg cgcgcgcgca accagttgaa gaacgtgcgc gccctcgtcc ttctcgacat
     4141 ggtcggctac gaaaagcttg agttggggcg cgagacggcg agcacgccgt ggctcattga
     4201 tatcatctgg ggaacggcgc gctctctcgg ctacggcgac attttcctcg agagggagga
     4261 ggccgtaggt ggcgacgacc acgagccctt cctcgccgcg ggcgtccccg ccgttgacat
     4321 aattcagcta gaaacctacc cgcactggca cacgcgcgac gacacgctcg acaaaatctc
     4381 ccgccggagc ctccgcgtgg tcggcgaagt cgtcctcgcc agcctgccgc gggtagaaga
     4441 gaaactgaaa gggggcggcc tgtagaaaac tgccgaccgc ccgattcgga ggttcgcgat
     4501 gttgaaagcg acagacatac tcgtgccggt tgatttttcg ccgacctcga ttaacgccgt
     4561 gcgcgtggcg gtcgggatag cagagccggg gggagacgtt acgctgctgc acgtgattga
     4621 caaggacttc gtcgaggacg ccgtggcggc cgggatgggc tcgtcggacg agataacggc
     4681 caagctgagg gagctggccg aggcgagctt cgcctcagcg ctcgaatcgg tcgagacggg
     4741 cgacgtgagc gtcgagcgca tggtcgtcgt cggcagcccc ttcgtcgaga ttctcaagat
     4801 agcgcgcgac cttgatttgc cgatgatcgt gatgggcgtg cgcgggcgct cgtcgcaggc
     4861 ggaagacctg ctcttcggct cgacggccga gaaagttctg cgcggcacgc gcgtccccgt
     4921 gctctgcgtg ccgttctgag ggaacgatga aaaagactcg actgatgacg cttacaattc
     4981 tcacttcgct tctggccgcg cagccggccg cagggcagg
//
LOCUS       DASPKR010000565         9049 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1380062, whole genome shotgun sequence.
ACCESSION   DASPKR010000565 DASPKR010000000
VERSION     DASPKR010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9049)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9049
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1380062"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..184
                     /locus_tag="VD968_15185"
     CDS             <1..184
                     /locus_tag="VD968_15185"
                     /inference="COORDINATES: protein motif:HMM:NF014622.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HYE15786.1"
                     /translation="SARAAVPSHIPLVAIGGITAERARSVLEAGADSVAVIGALLRRG
                     EPGEIARLTRSFLARL"
     gene            393..1616
                     /locus_tag="VD968_15190"
     CDS             393..1616
                     /locus_tag="VD968_15190"
                     /inference="COORDINATES: protein motif:HMM:TIGR01420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HYE15787.1"
                     /translation="MRYFDLPPILERMLAVSDKISDLNFSVGQAPQVEINGKLTPAQP
                     LGLQKLSPYQTEMIAMTLMYGNPDAAHRLAHTGSTDLSYSLPTRTRFRVNIFQQRGTY
                     SIVMRVIPTDIPTLETLNLPPQLADITDLRNGIVLVTGPTGAGKSSTLAALIDIVNQR
                     HHYHVVTIEDPIEFLHSHKNSTINQREIGSDAKDFPSALRAALRQAPKVILIGEMRDY
                     ETTEIALEAAETGHLVLSTLHTIDASKTVDRVIGLYPKNEEQVIRTRLAQTFRFIVSQ
                     RLIPRADGAGRVAAVEILKSTPRTREYIAEGESEGKTLLDAMRDGKLDGMQDFDTVIK
                     GMIEAGTVTLEDGLSFATNPNNLVLALKGMSASDDFIASEKQSHGARRNGGARPFVNK
                     GPRTPPPSSMLDMIE"
     gene            1693..2502
                     /locus_tag="VD968_15195"
     CDS             1693..2502
                     /locus_tag="VD968_15195"
                     /inference="COORDINATES: protein motif:HMM:TIGR02098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HYE15788.1"
                     /translation="MIVTCTNCSTKLQLDSAKIPSRQFSVRCPKCQQIINAQPPAAQS
                     ARDALGAVGDLPATTRAQKEATATAPAAPVVRADSAPQARTPSQPAPPTADAGGEALR
                     LLSALLAQGAPEGEGHDRGPIKRPAWERRRALVCVGSTYCDPVARALVDGRYEVCIVG
                     DAAQAAEQMREAPVDVIVLDQEFDMGGQGAIAVARELSYMRMPDRRRVVFVQLSPTAR
                     TGDAHAAFLANANLVVNTSDLADLPRALEKNVRDLNDLYRHFNKALGLHAI"
     gene            2688..3650
                     /locus_tag="VD968_15200"
     CDS             2688..3650
                     /locus_tag="VD968_15200"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HYE15789.1"
                     /translation="MASGNGHRHHGHAHGAPRAASGSRARLLLVLVLTATYMLAEAVG
                     GWLTGSLALLADAGHMLTDAAGLALALLAAWFGSRPATPSKTFGYYRLEILAAFTNGV
                     ALVVVSLFIIYEAYERWFAPPEIARGGLMIAVAAGGLAVNLICAWVLHGDHARDLNLR
                     GAWLHVIGDAAGSVGAILAGVLVTFFGWRAADPLFSAFIALLIVWSSWNLIREATNVL
                     LEGTPSHINLRAVEGAILATDGVEDVHDLHVWTITSGREALSAHVRHAHAVSQPELLR
                     ALRGRLHDEFGVDHLTIQMETEDFEDETFHFCTSGTACFRSPEE"
     gene            3660..3902
                     /locus_tag="VD968_15205"
     CDS             3660..3902
                     /locus_tag="VD968_15205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15790.1"
                     /translation="MEISLLLVLDLREQAALQAALVTHGAPDSLVTLALTGACRISSL
                     DEARMLRRWLADVRASGKTDFASLNVIERELVRFGV"
     gene            3910..5175
                     /gene="larA"
                     /locus_tag="VD968_15210"
     CDS             3910..5175
                     /gene="larA"
                     /locus_tag="VD968_15210"
                     /inference="COORDINATES: protein motif:HMM:NF033504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050043 - lactate racemase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent lactate racemase"
                     /protein_id="HYE15791.1"
                     /translation="MTRVELGYGRGSVTFEFEEGRFEVLGAGGGTAEAPLSDAEMGAL
                     IDDPVDSQPLEEIVTPGESALIVVSDATRATGSASVVNLLVRRLIQLGVAPHDLRIIF
                     ATGIHRPVTREEKAELLSPFIVQRVRTLDHDAYDPARHISFGETVRGTPVELNRALFD
                     YSHVILTGAVGFHYFAGFTGGRKSICPGLASARTVEATHLLALDFERGGRRSGVGAGR
                     LDGNAVHEECERIAAEVAPSFLVNTVVDGRGRVVRLYAGDWRSAHRLACAEHADSHTV
                     KIKEKRPVVVVSAGGSPGDVNMIQAHKALEMASHACAEGGRLVLVAECAEGLGRHDFL
                     KWFEAENSRALEERLRSAYEVNGQTAWSLMTKSERFRLRLVSSLPEVAALAMGFEPAR
                     SVAEALEGVGADAPGYVLPRGASLMPVVS"
     gene            5306..5962
                     /locus_tag="VD968_15215"
     CDS             5306..5962
                     /locus_tag="VD968_15215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15792.1"
                     /translation="MKTACLLALAYTPAQWARAQTVAAEQPPQEGVRPSEAVVPLAQA
                     AVALDAVGRQALGGRLRTQSLAGTPEAPVRNTRIVIENRSTLFYNYVSGWATFYGEDG
                     VRCGEGLWKLEALAPSEQVEVDTPGLRLTCAPASWRIVATTLLTRTADVAKPAQGAAP
                     QPETGAPAAAMTTTTEPTPAIPPLEINVNGKTIPIQLGNPLEVIVGKERVRIILQPAP
                     "
     gene            6069..6221
                     /locus_tag="VD968_15220"
     CDS             6069..6221
                     /locus_tag="VD968_15220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15793.1"
                     /translation="MADENKRKCARETCGCPAAADSKYCSEECEDAAKAIKFEISCTC
                     HHKECQ"
     gene            6448..7233
                     /locus_tag="VD968_15225"
     CDS             6448..7233
                     /locus_tag="VD968_15225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15794.1"
                     /translation="MRLKFLAAALALAACAGPAFAQSQSTGARAGAANETSLARDGGQ
                     LNIASGTRLTAELQNALDVSRARVGDRVVLKTTEAIKSNGETVVKRGARLVGHVSDVQ
                     RRARGATESSVTILFDRLESGSLTAPISVTIDSVTQAGARARAGDDDLGAGASGRGSA
                     RSSGNSSSSSGGLLGGVTGAVGNTVGGVTGAASDVVGSTTETVGSTTRSVGRTLGQIR
                     VTQSSSASAEAGSTLSLTGGDLRLEKGATFRLIVNESAGLNEQ"
     gene            complement(7341..8171)
                     /locus_tag="VD968_15230"
     CDS             complement(7341..8171)
                     /locus_tag="VD968_15230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15795.1"
                     /translation="MKKTTLLTYAMAALLALVASPSIARADAEDRLYDFTDEFYRQNG
                     VDPSKIVGRRQGDGRLGVFDTPNYSFQRNVRALLTLPAYNHSGNPVYWTVMGELFNDG
                     FTDDEAGRRARQTADNMIEYVFPTKDGNPVGLGNLRQSVMLDMRNGYFSNNPLGLWVH
                     VWISYTPRAFNTSAGKKALADLHKRNGLALDGTPIIKTLSELDNLFSKGLIAKRLRNP
                     DGSEGAVYSICPVIKDPTDGGIAVDSFLAYTRKPDGSPLEPYFLRNFDSLKVTGDWAD
                     "
     gene            8370..>9049
                     /locus_tag="VD968_15235"
     CDS             8370..>9049
                     /locus_tag="VD968_15235"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYE15796.1"
                     /translation="MSRSIHFADSGARARTAASEEGVRARLREIVGGENVLVDEERVE
                     PYAGDALKEKFPPEAVVLPRSAAEVSAIMRLANERRFPVTARGGGVGYTGGAVPVEGG
                     IVVGTDRMNRIREVNAEDLYAVTEPGATTYALQQAVEAEGLFYPPDPASYKNSYIGGN
                     IAENAGGIRSAKYGVTKHYVMGLEVVLPTGEVVRTGGLTSKNVVGFDLTGLMCGSEGM
                     LGVITEATL"
BASE COUNT         1498 a         3162 c         2985 g         1404 t
ORIGIN      
        1 gagcgcgcga gcggccgtgc catcccacat ccctctggtc gcaatcggcg gcatcacggc
       61 cgagagagcg cgctccgtgc tcgaagctgg cgccgactca gtcgccgtca tcggcgcgct
      121 cctccgccga ggcgagccgg gtgagatagc ccgcctcacg cgctcgttcc tcgcccgcct
      181 ttaggggtga aagccccgcc gccgaaaagt taactgttaa aataatagcc gttaaaagtt
      241 ttaacttgct tttcgccgcc gcgtgttaca gaatgagaat cggccgccgg ctctaacttc
      301 tgcggccccg cccgcaggcc cgccgaggcc gccacgcact ccttaccaac tctccgccct
      361 ttaccttcgt tcacgacgga gcgaccgaca ccgtgagata cttcgacctg ccgcccatcc
      421 tcgagcgcat gctcgccgtc tctgacaaga taagcgacct taacttctcg gtcgggcaag
      481 cgccgcaggt cgagataaac ggcaagctca cgcccgcgca gccgctcggc ctgcaaaagc
      541 tctcgcccta ccagaccgag atgatcgcaa tgacgctcat gtacggcaac cccgacgcgg
      601 cgcaccgcct cgcgcacacg ggctcgaccg acctgagcta cagcctcccc acccgcacgc
      661 gcttccgcgt caacatattc cagcagcgcg gcacttactc catcgtgatg cgcgtcatcc
      721 cgaccgacat cccgacgctc gagaccttga acctcccgcc gcagctcgcc gacataacag
      781 acctgcgcaa cggcatcgtg cttgtcaccg gcccgactgg cgccggcaaa agctccacac
      841 tcgcggccct catagacatc gtcaaccagc gccaccacta ccacgtcgta accatcgaag
      901 acccgataga gttcctgcac tcgcacaaga actcgaccat caaccagcgc gagataggct
      961 cggacgccaa agacttcccg tcggccctcc gcgcggcgct ccgtcaggcg ccgaaggtca
     1021 tactcatcgg cgagatgcgc gactacgaga cgaccgagat agcgctcgag gcggcggaga
     1081 cgggccacct cgtcctctcc acactccaca ccatagacgc ctcgaagacc gttgaccgcg
     1141 tcatcggcct gtacccgaag aacgaggagc aggtgatacg cacgcggctg gcgcagacgt
     1201 tccgcttcat cgtctcgcag cggctcatac cccgagccga cggggcgggg cgcgtcgcag
     1261 ccgtagaaat cctgaagtcc acgccgcgca cgcgcgagta catagccgag ggcgagtccg
     1321 agggcaagac cctcctcgac gccatgcgcg acggcaagct cgacggcatg caggacttcg
     1381 acacggtcat caagggcatg atagaggccg ggaccgtcac gctcgaggac ggcctctcct
     1441 tcgctaccaa ccccaacaac ctcgtgctcg ccctcaaggg catgtcggcc tccgacgact
     1501 tcatcgcctc cgagaagcag tcacacggcg cgaggcgaaa cggcggcgcc cgccccttcg
     1561 tcaacaaagg cccccgcacc ccgcccccct cctccatgct cgacatgatc gaataaagca
     1621 gaggctaggg gctagttaaa aacctctcgt ctcaaactag cctctaggcc ctgacctcta
     1681 gcctctaaaa ttatgatcgt cacctgcacg aactgctcga cgaagctaca gctcgacagc
     1741 gcgaagatac cctcgcgcca gttcagcgtc cgctgcccga agtgccagca gataatcaac
     1801 gcgcagccgc ccgccgcgca gtcggcgcga gacgctctgg gcgccgtggg cgatcttccc
     1861 gcgacgacac gcgcgcagaa ggaggcgacg gccacggccc ctgcggcccc ggtcgtgcgg
     1921 gccgactccg cgccccaggc tcgcacgccc tcccagccgg cgccccccac ggcggatgcg
     1981 gggggcgagg cgctgcggct gctctcggct ctgctcgcgc agggcgcccc cgagggcgaa
     2041 ggccacgacc gcgggcctat caagcggccc gcctgggaga ggcggcgcgc actagtgtgc
     2101 gtcggctcga cctactgcga ccccgtggcg cgcgccctcg ttgacggccg ctacgaggtc
     2161 tgcatagtcg gcgacgcggc gcaggcggcc gagcagatgc gcgaggcgcc ggtggacgtg
     2221 atcgtgctcg accaggagtt cgacatgggc gggcaggggg cgatagccgt ggcgcgcgaa
     2281 ctgagctaca tgcgtatgcc cgaccgccga cgcgtcgtct tcgtgcagct ctcgccgacg
     2341 gcgcgcacgg gcgacgcgca cgccgcgttc ctcgccaacg cgaacctcgt cgtcaacacc
     2401 tccgacctcg cagacctgcc gcgcgcgctc gagaagaacg tgcgcgactt aaacgacctc
     2461 taccgccatt tcaacaaggc gctcggactg cacgcgattt aaggccccgg cgacgcggcc
     2521 ctgcggcggc gggcgccgtc gcgctccctt cttcaacgag aggaagcgcg acggcgcccg
     2581 ccgcactgtt tttgcgcgaa cgtgcaatct gataagctta cacgtcccgc gcggccggag
     2641 aggcgacgac tccgggcgcc cgcgtcgcgc tcttcttgaa ggcgaagatg gcttccggga
     2701 acggtcacag gcaccacggc cacgcgcacg gcgccccgcg cgccgcgtcg ggcagccgcg
     2761 cgcgactgct gctcgtgctg gtgctcacgg ccacttacat gctcgcggag gcagtgggtg
     2821 ggtggctgac gggcagcctc gcgcttctgg ccgacgcggg ccacatgctg acggacgctg
     2881 cgggcctggc actcgcgctc ctggccgcgt ggttcggctc gcggcccgcg acgccgagca
     2941 agacgttcgg ctattaccgg ctcgaaatcc tcgcggcctt cacgaacggc gtggcgctcg
     3001 tcgtcgtctc tctcttcatc atctacgagg cttacgagcg ctggttcgcg ccgcccgaga
     3061 tagcgcgcgg cgggctgatg atagccgtcg ccgcgggcgg cctcgccgtc aacctcattt
     3121 gcgcgtgggt gctgcacggc gaccacgcgc gcgacctgaa cctccgcggc gcgtggctgc
     3181 acgtcatagg cgacgcggcc ggctccgtgg gcgcgatact cgcgggcgtg ctcgtcacct
     3241 tcttcggctg gcgcgcggcc gacccgctgt tcagcgcctt catcgcgctg ctcatcgtct
     3301 ggagcagttg gaacctcata cgcgaggcga cgaacgtctt gctggagggc acgccgtccc
     3361 acataaacct gcgcgccgtc gagggcgcga tactggcgac cgacggcgtc gaggacgtcc
     3421 acgacctcca cgtctggact atcacgtcgg gccgcgaggc cctgtcggcg cacgtccgcc
     3481 acgcgcacgc cgtctcgcag ccggagcttc tcagggcgct gcgcggcagg ctgcacgacg
     3541 agttcggggt tgaccacctg acgatacaga tggagacgga ggacttcgag gacgagacgt
     3601 tccacttctg cacctccggc acggcctgct tccgctcccc agaagaatag tcccggctta
     3661 tggaaatcag ccttcttctc gtcctcgact tgcgcgaaca ggcggcgctt caggcggcgc
     3721 tcgtaacgca cggcgcgccg gacagcctgg tgacgctggc gctcacgggc gcgtgccgca
     3781 tctcttcgct cgacgaggcg cggatgctgc gccggtggct ggcggacgtg cgcgcctccg
     3841 gcaagaccga cttcgcctcc cttaacgtca ttgagcgcga gctggtgcgc ttcggcgtct
     3901 gaggcgttta tgactcgggt cgaactaggc tacggccgcg gctccgtcac ctttgagttc
     3961 gaggagggcc gcttcgaggt gctgggcgcg ggagggggta cggctgaggc gccgctctct
     4021 gacgccgaga tgggcgcgct catagacgac ccggttgact ctcagccgct ggaagagatc
     4081 gtcacgcccg gcgagagcgc cctgatcgtc gtctcggacg cgacgcgcgc cacgggcagc
     4141 gcctccgtcg tcaacctcct cgtccgccgc ctgatacagc tcggcgtcgc gccgcacgac
     4201 ctccgcataa tcttcgccac agggatacac cgccccgtca cgcgcgagga aaaagcggag
     4261 ctgctctcgc ccttcatcgt gcagcgcgtc cgcacgctcg accacgacgc ctacgacccc
     4321 gcgcgccata tctccttcgg agagaccgtg cgcggcacgc ccgtcgagct taaccgcgcg
     4381 ctcttcgact actcgcacgt catactcacg ggcgcagtcg gcttccacta cttcgcgggt
     4441 ttcacgggcg ggcgcaagag catctgcccc ggcctcgcct ccgcgcgcac cgtggaggcc
     4501 acgcacctgc tcgccctcga cttcgagcgg ggcgggcgcc gctccggcgt cggcgcgggc
     4561 cgcctcgacg gcaacgccgt ccacgaggag tgcgagcgca tcgcggccga ggtcgcgccc
     4621 tccttcctcg tcaacacggt tgttgacggg cggggccgcg tcgtgcgcct ttacgcgggc
     4681 gactggcgct cggcgcaccg cctcgcctgc gccgagcacg ccgactctca caccgtaaag
     4741 attaaggaga agcgccccgt ggtcgtcgtc tccgcgggcg gctcgcccgg tgacgtgaac
     4801 atgattcagg cgcacaaggc gctggagatg gcctcgcacg cctgcgcgga gggcggccgg
     4861 cttgtgctcg tcgccgagtg cgccgagggc ctgggccgcc acgacttcct caagtggttc
     4921 gaggcggaga actcccgcgc cctcgaagag cgcctgcgct ccgcctacga ggtgaacggg
     4981 cagaccgcct ggtcgctcat gacaaagtcc gagcggttcc gcctgcgcct cgtctcgtcc
     5041 ctgccggagg tcgcggcgct cgccatgggc ttcgagcccg cgcgctcggt cgccgaggcg
     5101 ctcgaaggcg tcggcgccga cgcgcccggt tacgtcctcc cgcgcggcgc atccctcatg
     5161 cccgtcgtct cctgacgaaa ccgcccggcc gaggccgttg cgcccgcgcg caaacgaata
     5221 tagagtagtc gcgctttgct tattctccgt ttggcctgcg ccgtgtgcgg cgggagcgag
     5281 gggaggggac gtgaggagtg cgatattgaa gacggcgtgc ctgctggctt tggcttatac
     5341 acccgcacag tgggcgcgcg cgcagacggt cgcggccgag cagccgccgc aggagggcgt
     5401 gcgccccagc gaggccgtcg tgccgctcgc gcaggcggcc gtggccctgg acgcggtggg
     5461 gcgccaagcg ctcggcgggc ggctgcgcac gcagtcgctc gcggggacgc cggaggcgcc
     5521 ggtgcgcaac acgcgcatcg tcatagagaa ccgcagcact ctcttctaca actacgtgtc
     5581 gggctgggcg accttctacg gcgaggacgg cgtgcgctgc ggcgagggcc tctggaagct
     5641 cgaagcgctg gcgccgagcg agcaggtaga ggttgacacg ccgggcctgc ggctcacgtg
     5701 cgcgcccgcg tcttggcgca tcgtcgccac gacgctgctc acgcgcaccg cggacgtagc
     5761 gaagccggcc cagggcgcag cgccgcagcc cgagacgggc gcgcccgcgg cggcgatgac
     5821 aacgacgacg gaaccgaccc cggcgatacc gccgctcgaa atcaacgtca acggcaagac
     5881 gatacccatt cagctcggga accctctgga agtcatcgtc ggcaaggagc gcgtccgcat
     5941 catcttgcag ccggccccct gagcgggagc ggcgtcgtca atccttgact tcggcggcgc
     6001 ggcgggacga aacttaaggc gaatcagtcg cccgacttgg acaaatcagc atgaggaggt
     6061 gagccctgat ggcggacgag aacaagagga agtgcgcgcg tgagacttgc ggctgcccag
     6121 ccgccgccga cagcaagtat tgcagcgagg agtgcgagga cgccgccaag gcaatcaagt
     6181 ttgaaatatc ctgcacctgc caccacaagg agtgccagtg agcacatcac gcgggcgggc
     6241 cgagggctga agagtcctgc tctgactctt cagccctcgg cccgcccttc tgttgccgta
     6301 atgcaagaga attgcaacct tactgcgggc taacctctcc tacgctcacc ccatcctaag
     6361 agcgccggac ggcgcgaagc cgccggccac aacattctca gaacgagcgc ccacccgacg
     6421 ggcgcagaaa gcccgtagga ggggtatatg cgtctaaaat tcttagcggc cgcactggcc
     6481 ctggcggcct gcgccggccc ggccttcgcc caatcgcaga gcacgggcgc ccgcgccggc
     6541 gccgcaaacg aaacttcact cgcccgcgac ggcggtcagt tgaacatcgc ctcggggacg
     6601 cgcctgacgg ccgagctaca aaacgcgctc gacgtgagcc gcgctcgcgt gggcgaccgc
     6661 gtcgtgctga agacgaccga ggccatcaag tcgaacggcg agaccgtcgt caagcgcggc
     6721 gcgcgcctcg tcggccacgt ctccgacgtg cagaggcggg cgcgcggcgc caccgagtct
     6781 tccgtcacca tactcttcga ccggctggag agcggctcgc tcacggcgcc catctccgtc
     6841 acgattgact cggtcacgca ggccggcgcg cgcgcgcggg cgggcgacga tgatctgggc
     6901 gcgggcgcga gcggccgcgg ctcggcgcgc tcttcgggca actcttcgtc ctcgtcgggc
     6961 gggctgcttg gcggcgtgac aggcgcggtc ggcaacaccg tgggcggcgt gacgggcgcc
     7021 gcgagcgacg tggtcggctc gacgaccgag accgtcggca gcactacgcg ctcggtcggc
     7081 cgcacgctcg gccagattcg cgtcacgcag tcttcgagcg cctcggccga ggccggctcg
     7141 acgctctcac tcaccggcgg cgacctgagg ctggagaagg gcgccacctt ccgcctcatc
     7201 gtcaacgagt cggcgggcct caacgagcag tgagccgtcc ggtggcattt tcggcctaac
     7261 ctgcggccaa ttgttaaggg ggcggggagt gatccccgcc cccttagcat tgggtgaagg
     7321 tgttcgcgga gaccgctcta ctagtcggcc caatcgcccg tgaccttcag gctgtcgaag
     7381 ttgcgcagga agtagggctc gagcggcgag ccgtccggct tgcgcgtgta ggcgaggaag
     7441 gagtcaacgg cgatgccgcc gtcggtcggg tctttgataa cggggcagat gctgtaaacc
     7501 gcgccctccg acccgtccgg gttgcggagc ctcttggcta tgagaccctt gctgaagagg
     7561 ttgtcgagct cgctcagtgt cttgatgatg ggcgtgccgt cgagcgccag gccgttcctc
     7621 ttatgcaggt cggccagggc cttcttgccc gccgatgtgt tgaaggcgcg cggggtgtag
     7681 ctgatccaga cgtgaaccca caggccaagc gggttgttgc tgaagtagcc gttgcgcatg
     7741 tcgagcatga cggactggcg taggttgccg aggccgacgg ggttgccgtc cttcgtgggg
     7801 aagacgtact cgatcatgtt gtcggcggtc tgccgtgcgc gccggcccgc ctcgtcgtcg
     7861 gtgaagccgt cgttaaatag ctctcccatg accgtccaat agacggggtt gccgctgtgg
     7921 ttataggccg gcagcgtcag cagcgccctg acgttgcgct ggaaagagta gttaggtgtg
     7981 tcgaacacgc cgagcctgcc gtcgccctgc cggcggccca ctatcttcga cgggtcaacg
     8041 ccgttctggc ggtagaattc gtcggtgaag tcgtagaggc ggtcttctgc gtccgcccgc
     8101 gcgattgagg gggaagcgac gagcgctagg agcgccgcca tcgcgtacgt gagtagggta
     8161 gtcttcttca actttcttct ccttaataat taccttgctt gtctgccgga gcgtaaggtc
     8221 gggccggggt cgctctccgc gtacagagcg cggggcgggc gggaaaatac cccggcccca
     8281 gatttttttc gccgtgcggc gcggcggcgg cggatttgag ggggaggcga cttgcgctat
     8341 aaatgagtcg cagggagaat caaccgggga tgagccgttc gattcacttc gcagacagcg
     8401 gcgcgcgcgc ccgcacggcc gcgtccgagg agggcgtgcg cgcacgcctg cgcgagatag
     8461 tgggcggtga gaacgtgctc gttgacgagg agagggtcga gccttacgcg ggcgacgccc
     8521 tcaaggagaa gttcccgccc gaggccgtcg tgctcccgcg ctcggccgcc gaagtctccg
     8581 cgataatgag gctcgctaac gagcgccgct tccccgtcac cgcgcgcggc gggggcgtgg
     8641 gctacacggg cggcgcagtc cccgtcgagg gcggcatagt cgtcggcacc gaccgcatga
     8701 accgcatacg cgaggtcaac gccgaagacc tctacgccgt cacggagccg ggcgcgacga
     8761 cctacgcgct ccagcaggcc gtcgaggccg agggcctctt ctacccgccc gacccggcct
     8821 cctacaagaa ctcctacatc ggcggcaaca tcgcggagaa cgcgggcggc atacgctcgg
     8881 ccaagtacgg cgtgacgaag cactacgtca tgggcctcga agtcgtgctc ccgaccggcg
     8941 aggtggtgcg aaccgggggc ctgacgagca agaacgtcgt cggcttcgac ctgaccggcc
     9001 tgatgtgcgg ctccgagggg atgctcggcg tcatcacgga ggcgacgct
//
LOCUS       DASPKR010000566         3807 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_215237, whole genome shotgun sequence.
ACCESSION   DASPKR010000566 DASPKR010000000
VERSION     DASPKR010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3807)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3807
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_215237"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2204)
                     /locus_tag="VD968_15240"
     CDS             complement(<1..2204)
                     /locus_tag="VD968_15240"
                     /inference="COORDINATES: protein motif:HMM:NF028519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase-like regulatory
                     domain-containing protein"
                     /protein_id="HYE15797.1"
                     /translation="MRISTFARLFAGALLLFCLSAAAAAQGTSSRVTGVVTDPAGAVV
                     EGATVTLTNEATNVSFTTQTTSTGTYVFDSVQVGTYSVTVELPGFKRFISTGNTVNVN
                     QPATVDVSLQPGDVTESVTVQASAEMVQTSSSGNFGNTVEERTLVSLPIVGVRGRNPL
                     GLINLQPGVVSGANTGGGIHVHGSRDRAFNFTLDGIDINESSAGGSNFTPLRPNPDSI
                     SQFQVVTSNFTAELGRSSGAQVSLVTKSGTNEFHGNLFDFYQTPRLIANEYNNNINGT
                     PRGQFVQHIYGGSLGGPLHLPRFGEGGPTFYNGRDRTFFFLNLQFLRTSQSLARTRTV
                     LTQQARQGIFRYVAGGRNNPAGVTGASVDAAGNPILPTCGGSVTTNCIASYSVAANDP
                     TGLGLDPTVQQVIGLTPLPNNFTAGGDGLNFAGFTFLAPQNEKQYDLAFKIDHTFNER
                     NTMFVRYAQGEQNTLGDSGNGNTNAGIIGGSGGPQAFPNSARNIDTLRNPKNLAVNYR
                     WTPTGNMTNEFVVGFNRFTFSFNNADPNADFNSPIRFDCPFSGTSGCLDLTNPLDNTP
                     IINNARSIRTYQVVDNLSWQRASHTLKFGTNLRFQQHLDNRGQAAGLYVNPQVDFSRV
                     TNPPPSALTSPSGINTANDQPRLRSFYNVMLGRIGNIGQGFVAASDNAFGPPGSRFPF
                     DARYPEYDFYAQDTWKLRSNLTVDFGLLPRAAQQQGGRLEGGLRCYRAAATRL"
     gene            complement(2503..>3807)
                     /locus_tag="VD968_15245"
     CDS             complement(2503..>3807)
                     /locus_tag="VD968_15245"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HYE15798.1"
                     /translation="GADGLDFYESLEGMLVRVNSAVAVGPSITRRDSKDVVVIGDGGA
                     GAGLRTARGGIIIRPGDFNPERITLVGDASQIPDVNVGDRFDGPVTGVLDYSFGNFRV
                     LLTGAAGVSARGIRPETAPAPGRDQLAVAAFNVQNLDPGDDDAKFSRLAGIVVHNLRS
                     PDLISVEEIQDNNGSVNDAEVDATQTFRKLVAAIRAAGGPAYDFRDIPPVDDQDGGEP
                     GGNIRVGFLFRTDRGLRFVARPGGGPTVATRVVGATGNPRLSSSPGRLDPANPAFAES
                     RKPLAGEFTFRGRRLFVIANHFASKGGDNPLFGRFQPPERATEPKRIQQAQVVAAFVR
                     QILARDRRARVIALGDLNDFEFSAPLAALKGAGLTALIERLPRNERYTYVFEGNSQTL
                     DHILVSRGLLGALASFDVVHINSEFFDQASDHDPTVAVFTFR"
BASE COUNT          581 a         1137 c         1405 g          684 t
ORIGIN      
        1 agtcgcgtag ccgccgccct gtagcatcga agtcccccct ccaaccgccc gccctgttgc
       61 tgtgctgcgc gaggtaagag gccgaagtcc acagtcaggt tggagcggag cttccaggtg
      121 tcttgggcgt agaagtcgta ctcggggtac cgggcgtcga aggggaagcg cgagcccggc
      181 gggccgaagg cgttgtcgct ggcggcgacg aagccctgcc cgatgttgcc gatgcgcccg
      241 agcatgacgt tgtagaagct gcgcaggcgg ggctggtcgt tggccgtgtt gatgcccgac
      301 ggcgacgtga gcgccgacgg cggcgggttg gtgacgcggc tgaagtccac ctgggggttg
      361 acgtagaggc cggcggcctg cccgcggttg tcgaggtgct gctggaagcg caggttggtg
      421 ccgaacttca gggtgtgtga ggcgcgctgc cagctcaggt tgtcaacgac ctgataggtg
      481 cggatgctcc gggcgttgtt gatgatcggg gtgttgtcga gcgggttggt caggtcgagg
      541 cagcccgagg tgccggagaa cgggcagtcg aagcggatcg gcgagttgaa gtcggcgttg
      601 gggtcggcgt tgttgaagct gaaggtgaag cggttgaagc cgacgacgaa ctcgttggtc
      661 atgttgcccg tgggcgtcca gcggtagttg acggcgaggt tcttggggtt gcgcagcgtg
      721 tctatgttgc gcgccgagtt ggggaacgcc tgcgggccgc ccgagccgcc gatgatgccg
      781 gcgttggtgt tgccgttgcc ggagtcgccc agcgtgttct gctcgccctg cgcgtagcgg
      841 acgaacatcg tgttgcgctc gttgaaggtg tggtcgatct tgaaggctag gtcgtactgc
      901 ttctcgttct gcggggcgag gaaggtgaag ccggcgaagt tcaggccgtc gcccccggcc
      961 gtgaagttgt tcgggagcgg cgtgagccct atgacctgtt gcacggtcgg gtcgaggccc
     1021 aggccagtcg ggtcgttggc cgcgacactg tagctggcga tgcagttggt cgtcacagac
     1081 ccgccgcagg tcggcaggat cgggttgccg gccgcgtcca cggaggcgcc cgtcacgccg
     1141 gccgggttgt tcctcccgcc cgccacgtag cggaaaatgc cctgccgagc ctgctgcgtc
     1201 agcaccgtgc gggtgcgggc gaggctctgc gacgtgcgca ggaactgaag gttgaggaag
     1261 aagaaggtgc ggtcgcgccc gttgtagaag gtggggccgc cctcgccgaa gcgcggcagg
     1321 tgcagcgggc cgccgaggct cccgccgtag atgtgctgca cgaactggcc gcgcggcgtg
     1381 ccgttgatgt tgttgttgta ctcgttggct atcaggcgcg gcgtctggta gaagtcgaag
     1441 aggttgccgt ggaactcgtt cgtcccggac ttggtgacga gcgagacctg cgcgccggag
     1501 gagcggccca actcggccgt gaagttgctg gtcacgacct ggaactgcga gatggagtcg
     1561 gggttgggcc gcaggggggt gaagttcgag ccgccggccg aggactcatt tatgtctatg
     1621 ccgtcgagcg tgaagttgaa ggcgcggtcg cgcgagccgt ggacgtggat gccgccgccc
     1681 gtgttcgccc cgctgacgac gcccggctgt aggttgatga ggcccagagg gttgcgaccg
     1741 cgcacgccga cgatgggcag cgacaccagg gtgcgctcct cgactgtgtt gccgaagttg
     1801 ccggagctgc tcgtctgcac catttcggcg gaggcctgca cggtgaccga ctcggtgacg
     1861 tcgccgggct gaaggctaac gtccacggtg gcgggctggt tgacgttgac ggtgttgccg
     1921 gtcgagatga atctcttgaa gccgggcagc tcgaccgtga cgctgtatgt gcctacctgc
     1981 acggagtcga agacgtacgt cccggtcgag gtcgtctgcg tggtgaagga gacgttcgtc
     2041 gcctcgttcg tgagcgtgac ggtcgctccc tcgacgaccg cccccgccgg gtcggtgacg
     2101 acgcctgtga cgcgcgacga agtcccctgc gcggcggccg ctgcgctaag acagaagagc
     2161 agaagcgcgc ccgcgaagag gcgggcaaag gtggatatcc tcatagtctt gggctcctaa
     2221 tttgcggttg tgggctcgcg cggccccgct ggcgaacgcg cacgacgccg ccgtggggct
     2281 ttagtcaaac ctgcgattga gaaacctttg aaacctgaag tgggacggtt aaaacctgac
     2341 gctgccgtga accttgcggg ccattttaat tgccgcgcgc gcaataatca aagctaaaag
     2401 attttatcgc agggataagc ggatttgtta agaaatttcg cccccggcgg cgccgccaaa
     2461 tggcggccgg cacgcgccgc tgcgccacga cgcccgaacg ccctacctga acgtaaagac
     2521 ggcgaccgtc gggtcgtggt cgctcgcctg gtcgaagaat tccgagttga tgtgcactac
     2581 gtcgaatgag gcgagcgcgc cgagaagccc gcggctgaca agtatgtggt ctagcgtctg
     2641 cgagttcccc tcgaagacat acgtgtacct ctcgttccgc gggagccgtt ctattagcgc
     2701 ggtgagcccc gcgcccttga gcgcggcgag gggcgccgaa aactcgaaat cgttgaggtc
     2761 gccgagggct atcacgcgcg cgcgccgatc tctcgcgaga atctggcgca cgaatgcggc
     2821 gaccacctgc gcctgctgta tgcgcttcgg ctcggtcgcg cgctcgggcg gctggaatcg
     2881 cccgaagagc gggttgtcgc cccccttcga ggcgaagtgg ttggcgatga cgaacagccg
     2941 cctgcccctg aaggtgaact cgcccgcgag gggcttgcgg ctctctgcga aggcggggtt
     3001 cgcggggtcg aggcggccgg ggctagagga gagccgcggg ttgccggtcg cgcctacgac
     3061 ccgggtcgcg acggtagggc cgccgcccgg tcgcgcgacg aatctcaggc cgcggtccgt
     3121 gcggaagagg aagccgacgc gtatgttgcc gcccggctcg ccgccgtcct ggtcgtccac
     3181 gggcgggatg tcgcggaagt cgtaggcggg gcctccggcc gcgcgaatcg cggcgacgag
     3241 cttcctgaac gtctgcgtgg cgtcaacctc cgcgtcgttc acgctcccgt tgttgtcctg
     3301 aatctcctcg accgaaatca ggtcgggcga cctgaggttg tgaacgacta tcccggcgag
     3361 gcggctgaat ttagcgtcgt cgtcgccggg gtctaggttc tgcacgttga aggccgcgac
     3421 cgcgagctgg tctctgccgg gcgccggggc ggtctcgggc ctgatgccgc gggccgagac
     3481 gccggccgcg cccgtcagca gaaccctgaa gttgccgaac gagtagtcca gcacgcccgt
     3541 tacgggcccg tcgaagcggt cgcccacgtt cacgtccggg atttgcgacg cgtcgccgac
     3601 cagggttatg cgctccgggt tgaaatcgcc gggccgtatg attatccccc cgcgcgcggt
     3661 gcgcagaccc gcccccgcgc cgccgtcgcc gatcacgact acgtccttgg agtcgcgccg
     3721 cgtgatcgag gggccgacgg ccacggcgct gttgacgcgc acgagcatcc cttcgaggct
     3781 ctcgtaaaag tcgagcccgt cggcgcc
//
LOCUS       DASPKR010000567         9841 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_864420, whole genome shotgun sequence.
ACCESSION   DASPKR010000567 DASPKR010000000
VERSION     DASPKR010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9841)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9841
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_864420"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..390
                     /locus_tag="VD968_15250"
     CDS             <1..390
                     /locus_tag="VD968_15250"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HYE15799.1"
                     /translation="LVVRLMRQPVDLSQFAAVRGNLVVLGILLLLVWTLAAFGEEMVY
                     RGYLMNRVAGLAGGGKGAWALSLVVVSLLFGVGHLYQGAPGVVVNVAAGLVYGAVYLW
                     AGRNLWAPIITHGVYDTAGLTLLYYGL"
     gene            580..1683
                     /locus_tag="VD968_15255"
     CDS             580..1683
                     /locus_tag="VD968_15255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15800.1"
                     /translation="MNVRALSAAEELRRYVDFGWEVYRENPYWVPPDSHHLTRVLAGE
                     GGFGPGSQIQAFWAEESGRVLATVAAVRDESYNRHWGEQTGHLLFFEALPGEDEAVGA
                     LIRAACEWLRGRGCDAARMSILPGLQMPLTIDAYDAVPTVFHTYNPPYYHSYIKNSGF
                     VTEKGVVQYQIKFTPELERSYREMVGRAEGAGVSLRPCDLERLEEETDALTDIFNETF
                     RAHWGFMPLPAAVMRGLTVELKDLLVPGFTLFAEADGRTAGAVYSLPDLNQALHAMRG
                     KAIEENFPEFQQRLQDIDHGVLLVIGVKEEYRGRGVNLALAAKSYLAMMERGYKTGSY
                     TVVLDDNWRSRRTAEKRGARVTRNFNVYRKELA"
     gene            1706..2098
                     /locus_tag="VD968_15260"
     CDS             1706..2098
                     /locus_tag="VD968_15260"
                     /inference="COORDINATES: protein motif:HMM:NF017868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase family protein"
                     /protein_id="HYE15801.1"
                     /translation="MGKHLVFVYGTLRRGGLRSMPDLFPGSEFVGGATVRGSLYDLGE
                     HPGLLLDEPGSTVVGEVYEVDEETLRELDEIEAPSDYHRKQTEVSLGGRTLACWVYEP
                     GPEPCPRHTLIASGDWIEHARAKGGRGA"
     gene            2224..3279
                     /locus_tag="VD968_15265"
     CDS             2224..3279
                     /locus_tag="VD968_15265"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE15802.1"
                     /translation="MAVNEEKLNQLLGKFVADFGATFHAGLVVIGESLGLYKALAGGP
                     VTSKELAERTGTDERYVREWLNSQAAGEYVQYDPSTGRYSLSEEQAFALADEKSPAYL
                     PGAFLLAVSALRAVPQITERFRTGEGFGWHEHDRGLFRGTELFFRPGYAANLTSAWIP
                     ALDGVEEKLRAGARVADVGCGLGASTILMAQAYPASTFVGYDYHDGSVEMARQRAEEA
                     GVSDRVKFEVARAKDYPGGGYDFVAFFDCLHDMGDPQGAAAHVRESLAPDGTWMIVEP
                     FAGDRVEENLNPVGRIYYSASTLLCTPASKSQEVGLALGAQAGEARLREVVTGGGFTR
                     FRRAAETPFNIVYEAKP"
     gene            3380..3685
                     /locus_tag="VD968_15270"
     CDS             3380..3685
                     /locus_tag="VD968_15270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15803.1"
                     /translation="MKEDVSPEEVSPEELRQCLGAISRYHEGASEVRLPPGEVYGHTS
                     PGGRYVYINFVRPSDIPVGSIYRTWVVRLEGGGGPGGVSYFRSRRGAAGDDTLPPDD"
     gene            3717..4331
                     /locus_tag="VD968_15275"
     CDS             3717..4331
                     /locus_tag="VD968_15275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15804.1"
                     /translation="MASSYLTFEQLLERVDEPYRTAFRRLLDACGELFRSARGSSHNH
                     QAWAGGYADHVREVMNTAVVLHDALGRLRPLPFSLSDALVVLFVHDLEKPWAYEEVGG
                     AWRRREGLKENAHAFRMGKLAEVGVTLPSELERAVFFVEGEGSHYSNRTRAMSPLAAF
                     CHMCDVASARLWHDHPLERDDPWAGAARTSAGPSRLKAGVEEEV"
     gene            complement(4296..5708)
                     /locus_tag="VD968_15280"
     CDS             complement(4296..5708)
                     /locus_tag="VD968_15280"
                     /inference="COORDINATES: protein motif:HMM:NF015043.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carotenoid oxygenase family protein"
                     /protein_id="HYE15805.1"
                     /translation="MKDYAPLIERAFEAVPAEGSYEVTRVEGRVPDFVRGTYYANGPA
                     RFSRGAFKYRHWLDGDGMACALRFEGGRARFTCRFVRTRKLVTEEGAGRPVFRAFGTS
                     FEGDRLRRGARLESPVNISIYPFGGRLLAFGEQGLPVELNALTLETRGEFDFGGALNE
                     LSPFAAHPKFDRETGEAFNFGVGFSAAGATMNFYRFDADGALGLRSRLPLECPCTIHD
                     FGLSRSYAVFHLSPYLLGVGSLVAGGRSLMGSLRWEPQRGSHLLVVSRESGEQVASLP
                     VEPRYCLHLVNCFEREGLLHVDLLELDRPVYDQYNIPDLFTRVPAGRPVRYTVDVGRG
                     RVEGRRALDYALSPDLPSVDARSAGRPYDDFWMLGISRAALGGRKFFDQLVHARWSEA
                     RPRDLYQAPPHQYLCGEPAFVPDETGETAGAVICQVFDAARGESSFAIFDAARVSRGP
                     LATLRLDSPLHFLFHACFQT"
     gene            complement(5705..7987)
                     /locus_tag="VD968_15285"
     CDS             complement(5705..7987)
                     /locus_tag="VD968_15285"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HYE15806.1"
                     /translation="MRITRPKGACLILLAALAGCAAWLYAAYGGFTRAALGYLRHASY
                     RENRNLYQHLDYWFETLGAMRRDESGFYGFDGVDEAALDELGLGRLAYHRGDFSRAVG
                     HIERDIAARGESEERLFWLAMSYMRLAEAENCLAALVSSPGAPRPHEAHGDAGEGAAC
                     ALPLTRFHGRPAAARRAAALFRKLLDEHDGEDRLYRWLLNFNLMTAGGYPGEVPERHR
                     LAGDFVETFYGRKARERAAEFAGLSLADRASEAGLDTFNAGRGVAVEDFDGDGRLDIV
                     AGGSYDQLRLYKSGAAGARFEDRTEEFGLVGVRQSLFVTAADYDNDGWVDLLVAHSFG
                     EPTRLFRNDGGRRFVDVTAASNVNDGVRPGQRSAVWATAWGDVDNDGDLDVFLAAMGT
                     RIPLSKGILAQPRAGSRLLINEGARFHDGTEEFGLGSIVRDQFFVGAAFGDADSDGYA
                     DLFLSSPFPGASALLMNLGGALFEARRGHGRVEGGFAACFVDFNHDGRLDIFQAGVAD
                     ARTSVEQAVFGEHGLVSGHSTVLVQGPGGGFAARDRLFDVAAGTMGSSYGDLDNDGCH
                     DFYLGTGTPEGWFVLPNLLYVGRAEGARCAEELTNVSMLWGLGTIQKGHAIVFADFDD
                     DGDQDIYSSLGGMWPADRWPNQFFVNESRPANSWLKVRLRGRRTNRFGVGATVKVVAE
                     SASGREVVRYAQVDQKTGFGSAPYLAHVGLLDAVRVRGVLVYWPGSRATKSYAARLGG
                     LNVLDEDEGLPVKEVSGGAR"
     gene            complement(8003..9757)
                     /locus_tag="VD968_15290"
     CDS             complement(8003..9757)
                     /locus_tag="VD968_15290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15807.1"
                     /translation="MTKTTEHYDVAIIGAGLAGLALARQLLLCSDKRVLLVERRSEVP
                     PARQKVGEATVQMSAYYFSKVLDLEEHLLREHFVKYNLRFFWKAGGRAGDRYEDYSQS
                     YIRTPSNIATYQLDRNKLEAEMLRLNLARENFDFRAPAADLDVTLSDDGPHALRFRHK
                     GEEVSATAGWVVDTSGRGKFLARRLGLERENVIRHGSAFFWVEGLVNVEKLTDSSPRQ
                     VRLNPARRSTGHFPVWLATNHFCGEGFWFWVIPLQGRTSLGLVYDNRTFPRERVDTTE
                     KLVEWACREFPLFARDLPRRKVVSRGSLKDFSYDCERTISASRWALAGEAGRFTDPLY
                     SPGGDLIALYNTLITDAVLTDDDAELSSKTAVYEQLMKALYEAYVPSYGTSYDVLGDQ
                     EAMTLKYTWELSVYFAFYVFPFINDLFTDRLFAVSYLRRFSRLGPVNRRLQSFLSDFY
                     QWKKRNARRAAEPVFSDFTESGALRAAEACFYRVGVTADEARAVLDEQLANLLEWARF
                     VVAHAHAVVCGDERAAGNRALVESINLEDFRFDPEEMRARHARHMNCEELYPWPFDAS
                     AFARFRAAAAERLAASRA"
BASE COUNT         1567 a         3269 c         3479 g         1526 t
ORIGIN      
        1 ctcgtcgtgc gcctgatgag acagccggtt gacctgagcc agttcgcggc cgtccgcgga
       61 aatcttgtcg tgctcggcat actgctgctg ctggtctgga cgctcgcggc cttcggcgag
      121 gagatggtct atcgcggcta ccttatgaac cgcgtggcgg ggcttgcggg cggcggcaag
      181 ggggcgtggg ctttaagcct cgtggtcgtg agccttctgt tcggcgtcgg gcatctctat
      241 cagggcgccc cgggcgtcgt cgtcaacgtg gcggccgggc tggtgtacgg cgccgtgtac
      301 ctttgggcgg gccgcaacct ctgggcgccg ataatcacac acggggtcta tgacacggcg
      361 gggctgacgc tcctctacta cggcctgtag cacggactgc gcggcgcgct ccttacgacg
      421 cgcccgattt tcgttagggc gatgagaagc gagaaagaga agatgctggg cggcgagctt
      481 tacgaccgct cgacccgcgg ctcgcggtcg gcaacccctg ccgcgtcata cgggaggccg
      541 gccgggtagc cgtcggcagc ggaaggagga gaacgagcga tgaacgttag ggccttgagc
      601 gcggccgagg agctgcggcg ttacgttgac ttcggctggg aggtctatcg tgagaaccct
      661 tactgggtgc ctcccgactc gcaccacctg acacgggtgc tggcgggcga gggcgggttc
      721 ggccccggct cgcagattca agccttctgg gccgaggagt cgggccgcgt gctggcgacg
      781 gtcgcggccg tcagggacga gtcatacaac cgccactggg gcgagcagac cggccacctc
      841 ctcttcttcg aggcgctgcc cggcgaggac gaggcggtcg gggcgctgat tcgcgcggcg
      901 tgcgagtggc tccgcggtcg cggctgcgac gcggctcgca tgtccatact gccggggttg
      961 cagatgcccc ttaccattga cgcctacgac gccgtgccga ccgtcttcca cacctacaac
     1021 ccgccctact accacagcta catcaagaac tccggcttcg tgaccgagaa gggcgtggtg
     1081 cagtaccaga taaagttcac gccggagctt gagcggagct accgcgagat ggtcgggcgc
     1141 gccgaaggcg cgggcgtctc tctgcggccg tgcgacctcg aacggcttga ggaggagacc
     1201 gatgccctca ccgacatctt caacgagacc ttccgcgcac actggggctt catgcctctg
     1261 cccgcggccg tcatgcgcgg gctgacggtc gagctgaagg acttgttagt cccaggcttc
     1321 acgctgttcg ccgaggcaga cggccggacg gccggcgccg tctattcgct gcccgacctc
     1381 aaccaggccc tgcacgcgat gcgcggcaag gccatagaag aaaatttccc cgagttccag
     1441 cagcgcctac aggacattga ccacggcgtg cttctcgtca tcggcgtgaa ggaggaatac
     1501 cgcgggcgcg gcgtcaacct cgcgctcgcc gcgaagagtt acctcgctat gatggagcgc
     1561 ggctacaaga ccgggagcta caccgtcgtg ctcgacgaca actggcgctc gcgccgcacc
     1621 gcggagaagc ggggcgcgcg tgttaccagg aacttcaacg tctatcggaa ggagctggcc
     1681 tgacgccgga ggccggtggg gccgcatggg taagcacctc gtcttcgttt acggcacgct
     1741 gaggcggggc ggcctgcgct cgatgcccga cctcttcccc ggctcggagt tcgtcggggg
     1801 cgcgaccgtg cgcggcagcc tctacgacct cggcgagcac cccggccttc tgctcgacga
     1861 gccgggctcg acggtcgtcg gtgaagtcta tgaggttgac gaagagactc tgcgcgagct
     1921 ggacgagata gaggcgccga gcgactacca ccgcaagcaa acggaagtct ccctcggcgg
     1981 ccgcacgttg gcctgctggg tttacgagcc cggccccgag ccctgcccgc gccacacttt
     2041 aatcgcgtcg ggcgactgga ttgagcacgc gagggcgaag ggcggccgcg gcgcctgatt
     2101 cccgccgccc ggaaaaattg aatcccgcgc cccgttagtt tatcttgtcg cccgcgccgc
     2161 ggaagtgctc cgccagttcg cgcactaccc gccccgctaa ttaagtatcg gagggctatg
     2221 gctatggccg tcaacgagga gaagcttaac caactgctgg gtaaattcgt cgcggacttc
     2281 ggcgccacgt tccacgccgg cctcgtcgtc ataggcgaga gcctggggct gtacaaggcg
     2341 ctggccgggg ggccggtgac ctctaaggaa ttggccgagc gcacgggcac ggacgagcgc
     2401 tacgtccgcg agtggctcaa ctcgcaggcc gcgggcgagt acgtccagta cgacccttcg
     2461 acgggccgct attcgctctc ggaggagcag gccttcgccc tcgcggacga gaagagcccc
     2521 gcgtacctgc cgggcgcgtt cctgctcgcg gtctccgcgc tcagggccgt gccgcagata
     2581 acggagaggt tccgcaccgg cgagggcttc ggctggcacg agcacgaccg cggcctgttc
     2641 cgcggcacgg aactcttctt ccggcccggc tacgccgcca acctcaccag cgcgtggata
     2701 cccgcgctcg acggcgtcga ggagaagctc agggcggggg cgagggtggc cgacgttggc
     2761 tgcgggctcg gggcctccac gatactcatg gcacaggcct accccgcttc gaccttcgtc
     2821 ggctacgact accacgacgg ctccgtagag atggcgcgcc agagggcaga ggaggcgggc
     2881 gtctccgacc gcgtgaagtt cgaggtcgcg cgcgccaaag actaccccgg cggcggctac
     2941 gacttcgtgg ccttcttcga ctgcctgcac gacatgggag acccgcaggg cgcagcggcc
     3001 cacgtgcgcg agtcgctcgc gcccgacgga acatggatga tcgtcgagcc cttcgcgggc
     3061 gacagggtcg aagagaacct caaccccgtc gggcgcattt actactcggc ctcgacgctg
     3121 ctctgcacgc cggcgtcgaa gtcgcaggag gtgggcctcg cgctcggggc gcaggccggc
     3181 gaggcgcgcc tgcgcgaggt ggtcacgggc ggcggcttca cgcgcttccg ccgggccgcc
     3241 gagacgccct tcaacatcgt ctatgaggcc aagccttagc gccgcctccc gccggggtac
     3301 gcctttaact cagtggctgc tgcccggcag ccactgagtt gttgacgtgc gctctacgag
     3361 gccgaagggg catgtaacca tgaaggagga tgtctcgccg gaagaggttt cgcccgagga
     3421 gcttcggcaa tgtctgggcg cgatctcgcg ctaccatgaa ggggcttcgg aagtcagact
     3481 gccccccggc gaggtttacg gccacacctc ccccggcggc cgctacgttt acatcaactt
     3541 cgtcagacct tccgatattc cggtcgggtc aatctaccgg acgtgggtcg tccggctcga
     3601 aggaggcggc gggcccggcg gcgtctcgta cttccgctcg cggcgggggg cggccggcga
     3661 cgacacgctc cccccggacg attgattccc gcgggcagtg ccccgaggag ttcgcgatgg
     3721 cctcttcgta cctgacgttc gaacagttgc tagagcgcgt ggacgagccg taccgcacgg
     3781 ccttccggcg cctgctggac gcgtgcggcg agctcttccg gtcggcgcgg gggtcgagcc
     3841 acaaccacca ggcctgggcg ggcggctacg ccgaccacgt ccgcgaagtg atgaacaccg
     3901 ccgtcgtcct ccacgacgcg ctggggcggc tccgccctct ccctttctcg ctctccgacg
     3961 ccctcgtggt tctcttcgtg cacgacctcg agaagccttg ggcttacgag gaggtcgggg
     4021 gagcctggcg ccgcagggaa gggctcaagg agaacgcgca cgccttccgc atgggcaagc
     4081 tggcggaggt gggcgtgacg ctgccgtcgg agttggagcg cgccgtcttc ttcgtcgagg
     4141 gcgaggggag ccactacagc aaccgcacgc gggccatgag ccctctggcc gccttctgcc
     4201 acatgtgcga cgtcgccagc gcgcgcctgt ggcacgacca cccgctcgaa cgagatgacc
     4261 cgtgggccgg ggccgcgcgc acgagcgccg ggccttcacg tttgaaagca ggcgtggaag
     4321 aggaagtgta ggggcgagtc gagccggagt gtggcgaggg ggccgcgcga gacgcgggcc
     4381 gcgtcgaaga tggcgaacga gctctcgccg cgcgcggcgt cgaacacctg acagatgacg
     4441 gcgcccgccg tctcgcccgt ctcgtcgggg acgaaggccg gctcgccgca gaggtactgg
     4501 tgcggcgggg cctgatagag gtcgcggggc cgcgcctcag accagcgcgc gtgcacgagc
     4561 tggtcgaaga acttgcgccc gccgagggcc gcgcgggaga ttcctaacat ccagaaatca
     4621 tcataagggc gcccagcact tcgcgcgtca acggaaggta ggtcgggcga gagtgcgtag
     4681 tcgagcgcgc gtcggccctc cacgcggccg cggccgacat ccacggtgta ccggacgggc
     4741 cgtcctgcgg gtacgcgcgt gaacaggtcg gggatgttgt actggtcgta aacggggcgg
     4801 tctagctcca ggaggtcaac atggaggagc ccttcgcgct cgaagcagtt gacgaggtgg
     4861 aggcagtagc gcggctcgac ggggagggaa gcgacctgct cgccgctctc gcgcgagacg
     4921 actagcaggt ggctgccgcg ttgcggctcc cagcggagcg agcccatcag ggagcgcccg
     4981 cccgcgacga gcgagcccac gccgagcagg taagggctca ggtggaagac ggcgtaggag
     5041 cggctcaggc cgaagtcgtg aatcgtgcag gggcattcga gcggcaggcg gctgcggagg
     5101 ccgagcgcgc cgtcggcgtc gaagcggtag aagttcatgg tggcgcccgc ggccgagaag
     5161 ccgacgccga agttgaaagc ctcgccggtc tcgcggtcaa acttcgggtg cgcggcgaac
     5221 gggctcagct cgtttaaggc gccgccgaag tcgaactcgc cgcgggtctc cagcgtcagc
     5281 gcgttaagct cgacggggag gccctgctcg ccgaacgcga gcaggcggcc gccgaagggg
     5341 tagatgctta tgttgacggg cgactccagg cgggcgccgc gccgcagccg gtcgccctcg
     5401 aagctcgtgc cgaaggcgcg gaagacgggg cggcccgccc cctcttccgt tacaagcttc
     5461 ctcgtcctca cgaagcggca ggtgaagcgc gcgcggccgc cctcgaagcg cagcgcgcag
     5521 gccatgccgt cgccgtcgag ccagtgtctg tacttgaaag cgccgcgcga gaagcgcgcc
     5581 gggccgttcg cgtagtatgt gccgcgcacg aagtcgggga cgcgcccctc gacgcgagtc
     5641 acctcgtagg agccttccgc cggcacggcc tcgaaggccc tctcgatgag cggcgcgtag
     5701 tctttcatcg cgcgcccccc gacacttcct tcacaggcag gccctcgtct tcgtcgagca
     5761 cgttcagccc gccgagccgc gcggcgtagc tcttcgtcgc gcgcgagccg ggccaataga
     5821 ccagcacccc gcgcacgcga acggcgtcga gcagcccgac gtgggcgagg tagggcgcgc
     5881 tgccgaagcc cgtcttctga tccacctgcg cgtagcgaac cacctcgcgc cccgacgcgc
     5941 tctcggccac gaccttgacg gtcgcgccca cgccgaatcg gttcgtcctg cgcccgcgaa
     6001 ggcgcacctt cagccaactg ttcgctggcc ggctctcgtt gacgaagaac tggttgggcc
     6061 agcggtcggc cggccacatg ccgccgaggc tcgaatagat gtcctggtcg ccgtcgtcgt
     6121 cgaagtccgc gaagactatg gcgtggccct tctgtatcgt gccgaggccc cagagcatcg
     6181 agacgttcgt aagctcttcg gcgcagcgcg cgccctcggc gcggccgacg tacaaaaggt
     6241 tcggcagcac gaaccacccc tcgggcgtcc ccgtgccgag gtagaagtcg tggcagccgt
     6301 cgttgtcgag gtcgccgtag gaggagccca tcgtgccggc ggccacgtcg aacaggcggt
     6361 cgcgcgccgc gaagcccccg cccggcccct gcacgaggac agtgctgtgg cccgagacca
     6421 gaccgtgctc gccgaagacg gcctgctcga cgctcgtgcg cgcgtcggcc acgcccgcct
     6481 ggaagatgtc gagacgcccg tcgtggttga agtcaacgaa gcacgcggcg aagccgccct
     6541 cgacgcggcc gtgcccgcgg cgggcctcga agagcgcgcc gccgaggttc atgagcagcg
     6601 cgctcgcgcc ggggaagggg ctcgatagga agaggtctgc gtagccgtcc gagtcggcgt
     6661 cgccgaaggc cgcgccgacg aagaactggt cgcgcacaat tgacccgagg ccgaactcct
     6721 ctgtgccgtc gtggaagcgc gcgccctcgt ttatgagcag gcgggagccc gcgcgcggct
     6781 gggcgagtat gcccttcgag agcggaatcc tcgtccccat cgcggcgagg aagacgtcca
     6841 ggtcgccatc gttgtcaacg tcgccccacg cggtcgccca cacggccgag cgctgccccg
     6901 gccgcacgcc gtcgttgacg ttcgaggcgg ccgtcacgtc aacgaagcgg cggcccccgt
     6961 cgttcctgaa cagccgcgtg ggctcgccga acgagtgcgc cacgagcagg tcaacccagc
     7021 cgtcgttgtc gtagtcggcc gcagtgacga agagcgactg gcgcacgccg acgaggccga
     7081 actcctccgt gcggtcttca aagcgcgcgc ccgccgcgcc cgacttgtag agcctgagct
     7141 ggtcgtagct cccgcccgcg acgatgtcga ggcggccgtc gccgtcgaaa tcctctacgg
     7201 ccacgccgcg gccggcgttg aaggtgtcga gccccgcctc gctcgcgcga tccgcgagcg
     7261 aaaggcccgc gaactcggcc gcgcgctccc gcgccttccg gccgtagaag gtctcgacga
     7321 agtcgcccgc gaggcggtgt cgctcgggga cttcgccggg gtagccgccc gccgtcatca
     7381 ggttgaagtt caggagccag cggtagaggc ggtcttcgcc gtcgtgctcg tcgaggagtt
     7441 ttcggaagag tgcggcggcc ctccgcgcgg ccgcggggcg cccgtgaaaa cgcgtgagcg
     7501 gcagcgcgca cgctgcgcct tccccggcgt cgccgtgcgc ttcgtgcggg cgcggggcgc
     7561 cgggggaaga tacaagcgcg gcgagacagt tctccgcctc ggccagccgc atgtaggaca
     7621 tcgccagcca gaagagtcgc tcttccgatt cgccccgcgc tgcaatgtcg cgctcgatgt
     7681 ggccgacggc ccgcgagaag tcgccgcggt ggtacgcgag gcggccaaga cctaattcgt
     7741 cgagggcggc ttcgtcaacg ccgtcgaagc cgtagaagcc cgactcgtcg cggcgcatcg
     7801 cgccgagcgt ctcgaaccag tagtcgaggt gctggtaaag gtttcggttc tcccggtagc
     7861 tcgcgtggcg caggtagccg agcgcggcgc gcgtgaagcc gccgtaggcc gcgtagagcc
     7921 acgccgcgca gccggcgagg gcggcgagca gaatcaggca ggctcccttc ggccgggtga
     7981 ttcgcatcgg cgcttcgatt cctcacgccc tgctcgccgc caacctttcg gcggccgcgg
     8041 cgcggaagcg cgcgaaggcc gaagcgtcga agggccaggg gtaaagctct tcgcagttca
     8101 tgtggcgtgc gtggcgcgcg cgcatctcct cggggtcgaa gcggaagtct tcgaggttga
     8161 ttgactcgac gagcgcgcgg ttgccggcgg cacgctcgtc cccgcagacg acggcgtgcg
     8221 cgtgcgcgac gacgaagcgc gcccactcaa ggagattcgc gagctgctcg tccaaaacgg
     8281 cgcgggcctc gtcggccgtg acgcccacgc ggtagaagca ggcttcggca gcgcgcagcg
     8341 ctcccgactc cgtgaagtcg ctgaagaccg gctcggccgc gcgccgcgcg ttcctcttct
     8401 tccactggta gaagtcactc aggaaggatt gcagacggcg gttgacgggg ccgaggcgcg
     8461 agaagcggcg gaggtatgag acggcgaaga ggcggtctgt gaagaggtcg ttgatgaagg
     8521 ggaagacgta gaaggcgaaa tagaccgaaa gctcccaggt gtacttgagc gtcatcgcct
     8581 cctggtcgcc gagcacgtcg tagctcgtgc cgtagctcgg cacgtaagcc tcgtagagcg
     8641 ccttcatcaa ctgctcatag acggccgtct tggacgagag ctcggcgtcg tcgtcggtca
     8701 gcacggcgtc cgtgatgagc gtgttgtaga gcgcgattag gtcgccgccg gggctgtaga
     8761 gcgggtctgt gaagcggccg gcctcgcccg cgagcgccca ccgcgacgcg cttatcgttc
     8821 gctcgcagtc gtaggaaaaa tccttgagcg agccgcgcga cacaaccttt cggcgcggca
     8881 ggtcgcgcgc gaagagcggg aactcgcggc atgcccactc gacgagcttc tcggtcgtat
     8941 ctacgcgctc gcgcgggaag gttcggttgt catagacgag gccgaggctc gtgcggccct
     9001 gcagcgggat gacccagaac cagaagccct cgccgcagaa gtggttcgtc gccagccaca
     9061 ctgggaagtg gcccgtcgag cgtcgcgcgg ggttgagcct gacctgccgg ggcgagctgt
     9121 ccgtcagctt ctcgacgttc acgagcccct cgacccagaa gaaggccgag ccgtggcgga
     9181 tcacgttctc gcgctcgagg ccgagccggc gcgcgaggaa cttgccgcgc cccgaagtgt
     9241 caacgaccca cccggccgtc gccgaaactt cctcgccttt gtgcctgaac cggagcgcgt
     9301 gcggcccgtc gtcagagagc gtcacgtcga ggtctgcggc cggcgcgcgg aagtcgaagt
     9361 tctcgcgggc gaggttgagg cggagcatct ccgcctcaag cttgttgcgg tctagctggt
     9421 aggtggcgat gttcgagggc gtgcgtatgt aggactgaga gtagtcctcg tagcggtcgc
     9481 ccgcgcgccc tccggccttc cagaagaagc gcaggttgta tttgacgaag tgctcgcgca
     9541 gcaggtgctc ttcgaggtcg agcaccttcg agaagtagta ggcgctcatc tggactgtgg
     9601 cctcgccgac cttctggcgc gcgggcggaa cttccgaccg ccgctcgacg agcaggactc
     9661 gcttgtcgga gcagagcagg agctggcgcg cgagcgcgag gcccgcgagg ccggcgccga
     9721 tgatcgccac gtcgtagtgt tcggtggtct tcgtcatcac ttcccggccg cgttcaagtc
     9781 ccgctcaagc gcctcacgcg tgacggggcc gcggtagatt ttcacgacgc gctgcgaaga
     9841 g
//
LOCUS       DASPKR010000568         5915 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_343301, whole genome shotgun sequence.
ACCESSION   DASPKR010000568 DASPKR010000000
VERSION     DASPKR010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5915)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5915
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343301"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..705
                     /locus_tag="VD968_15295"
     CDS             <1..705
                     /locus_tag="VD968_15295"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE15808.1"
                     /translation="LEIGCGLGTDGAGLARAGAIYTGVDLTEAAVSLARRRFELEGLP
                     GEFSVADAEALDFPDESFDLVYSHGVLHHTPDAAAAVREIQRVLRPGGRAVVMLYHRD
                     SYNYRVNIGLLRRHGARLLKTEAGLKLAHALTGEPVESLREHAARLRQDAAGYLSAGE
                     FLSRNTDGAGNPLTRVYSRREARELFKDFARVEFAVHFLNKRWLPVLGRVLPRPVEKR
                     LASRWGWHLWIYATKD"
     gene            717..1676
                     /locus_tag="VD968_15300"
     CDS             717..1676
                     /locus_tag="VD968_15300"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HYE15809.1"
                     /translation="MRNILLTGGAGFIGSHLVGRLLSEGGWRVHVVDDFNDFYDPAVK
                     RRNVAPYEGREDFLLHEADIRDRDALARVASGARFDCVVHLAARAGVRPSLTEPLLYA
                     ETNITGTLNLLELARSQGVRQFVFGSSSSVYGENEKVPFAEDDPIFKPISPYAATKAA
                     GELLCHTYSHLFGLRCVCLRFFTVYGARQRPDLAIHKFARLISRGAPIPVFGDGTTRR
                     DYTYIDDIIAGVRAAMDYEASDYEVINLGESRTVELRELISLLEKELGRGAKIDRQPL
                     QPGDVPQTFADISKARRLLGYDPKTPIEEGIRRFVEWFRESQS"
     gene            1689..2723
                     /locus_tag="VD968_15305"
     CDS             1689..2723
                     /locus_tag="VD968_15305"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYE15810.1"
                     /translation="MKIYDEEETVISREEETVAARRADGSGAAGPEISLFLPVLNEEP
                     NLRPLHAKIDEALAALGRTAEVIYVDDGSSDGSLGVLRDLAARDPRVRVVALRRNYGQ
                     TAAMAAGIDAARGQVLIPMDADLQNDPADINRLLEKLDEGFDVVSGWRKERQDKMVSR
                     KIPSMIANKIISFIGGVKLHDYGCSLKAYRREFLKEVKLYGEMHRFIPIYASWVGARV
                     TEIPVRHHPRTMGKSKYGLSRTFKVMLDLMTIKFMASYHTKPIYVFGLFGFSSFIISV
                     VAFVWAILRKLGGESFIRNPLFTIAIVMFAVGVQFILMGLLAEMLVRTYHESQAKTVY
                     IVRERIGFVE"
     gene            2785..4029
                     /locus_tag="VD968_15310"
     CDS             2785..4029
                     /locus_tag="VD968_15310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15811.1"
                     /translation="MTEAQEFERVYDAARAWAAERDYAGHDPFDALNSRLFRATPLRR
                     SRLARLAWTQAFKRSPVNLRRLALVPEERNAKGTALFALAALSRLRATGREEHAIDAR
                     TLLDSLVASRVETAGGGAAWGYNFDWQGRAFYAPRGTPTVVPTAFAVRALAEASRAFG
                     PGGAAYLDAARRACDFILKDLNRSDETAEDVCFSYTSLDSTRVFNASLLAGEALATVG
                     ARTNEAELTAAALRASRYVARRQRADGSWAYGADSYQSWSDNFHTAFVLTSLARIVET
                     VAADNGDAREEILGALGRGYAFWRDSFFLADGWPKYYHRSAHPADTHSAGAAIVACAE
                     LRQLEPDATGLAARVASWAVRELYDRRGFFRYQRRRLLTVRTPYMRWSQAWMTYALAR
                     FLEAVGGQRSAISKDEKLIADG"
     gene            4047..5072
                     /locus_tag="VD968_15315"
     CDS             4047..5072
                     /locus_tag="VD968_15315"
                     /inference="COORDINATES: protein motif:HMM:NF015940.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF354 domain-containing protein"
                     /protein_id="HYE15812.1"
                     /translation="MRIWIDLANSPHVPFFRALAREFRARGHEVEATARRFAQTVELA
                     EAAGFRASVVGGHGGGRLSGKAGNIAGRALALARWARGRGLDLAVSHNSYSQVLAARL
                     LSLRAVTLMDYEHQPANHLAFRLASRVVVPGAFPDEALRRFGAWPEKVRRYRGIKEDV
                     YLADFTPDPGFAALLRERFGFEHDRHALVVVRPPASEALYHRFENELFDEVLARLVAQ
                     EGVKVVVLARSGEQREALRARHASPDLFAPREALDGANLVAAADLVVSAGGTMNREAA
                     ALGTPAVSAYAGRWAAVDEQLVREGRLRRVATREDAESLRVVKKPPPPPRRGAGVREE
                     VAEMILS"
     gene            5141..>5915
                     /locus_tag="VD968_15320"
     CDS             5141..>5915
                     /locus_tag="VD968_15320"
                     /inference="COORDINATES: protein motif:HMM:NF025104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15813.1"
                     /translation="MRASEVRAAARAPRWAVPAVKAALVAADACVAVAAFVAAYALRE
                     GGGVLVSFSLGEGFVWEPRFEPYGALLWFVVAARLLTLAYYDLYRLRGEFSYLDDAVR
                     VFKATATASLLIVAWAFLYRGGYEFRAFSYARGVFVYDFALALASYGALRLAVRGVQS
                     AVRRREVNLIPTLVVGRGHEAALYIRETRERREVGYRVIGVVETETSAAEAPAEFEGV
                     PVVADLDGLHDAIRETGANEVVITDTSVPGELLFDVTLRV"
BASE COUNT          873 a         2072 c         2010 g          960 t
ORIGIN      
        1 ctcgagatcg gctgcgggct cggcaccgac ggggcgggcc tcgcacgcgc cggggcaatc
       61 tacacgggcg ttgacctgac ggaggcggcc gtctcgctcg cccgccgccg cttcgagctg
      121 gaaggcttgc ccggcgagtt cagcgtggcc gacgccgagg ctttggactt ccccgacgag
      181 agcttcgacc tcgtctattc gcacggcgtc ctgcaccaca cgccggacgc ggcggccgcc
      241 gtgcgcgaga ttcagcgcgt gctccggccg ggcgggcgcg cagtcgtcat gctctaccac
      301 cgcgactctt acaactaccg cgtcaacatc ggcttgttgc gccgccacgg cgcgcggctc
      361 ctgaaaacag aggcggggtt gaagctcgcg cacgcgctga cgggcgagcc cgtcgagagc
      421 ctccgcgagc acgccgcgcg actgaggcag gacgccgccg gctacctgag cgcgggcgag
      481 ttcctgagcc gcaacacaga cggggccggc aaccctttga cgcgcgtcta ttcgcggcgc
      541 gaggcgcgcg agctcttcaa agacttcgcg agggtcgagt tcgccgtgca cttccttaac
      601 aagcgctggc tccccgtcct cgggcgcgtg ctgccgcgcc ccgtggagaa gcggctcgcc
      661 tcgcgctggg gctggcacct ctggatttac gcgacgaaag actgactgct gcacttatgc
      721 gaaacattct tttgacgggc ggggcgggct tcatcggctc gcaccttgtc gggcggctgc
      781 tctcggaggg cggctggcgc gtccacgtcg ttgacgactt caacgacttc tacgaccctg
      841 cggtcaagcg ccgcaacgtc gcgccctacg aggggcgaga agacttcctg ctccacgagg
      901 ccgacatacg cgaccgcgac gctctcgcgc gcgtcgcgtc gggggcgcgc ttcgactgcg
      961 tcgtccacct cgccgcgcgc gcgggcgtcc ggccctcgct cacggagccc ctgctctacg
     1021 ccgagacgaa catcacgggg acgctcaacc ttctggagct agcgcgctct cagggcgtgc
     1081 ggcagttcgt cttcggctcg tcctcgtcgg tttacggcga gaacgagaag gtgccgttcg
     1141 ccgaggacga tcccattttt aagcccatct cgccctacgc cgcgacgaag gcggcgggcg
     1201 agcttttgtg ccacacctac tcgcacctgt tcggcctgcg ctgcgtctgc cttcgcttct
     1261 tcaccgttta cggcgcgcgc cagcgccccg acttagccat acacaagttc gcgcgcctga
     1321 taagcagagg cgcgccgata cccgtcttcg gcgacggcac gacgcgccgc gactacacgt
     1381 acattgacga catcatcgcg ggcgtgcgcg ccgcgatgga ttacgaggcg agcgactacg
     1441 aggtgataaa cctcggcgag tcgcgcacgg tcgaactgcg cgagctcatc agcctgctcg
     1501 aaaaggagct cggtcgcggc gcgaagattg accgccagcc gctacagccc ggcgacgtgc
     1561 cgcagacctt cgcagacatc tcgaaggccc gccgcctgct cggctacgac ccgaagaccc
     1621 ccatcgagga gggcatacgc cgcttcgtcg agtggttccg ggagtcacag agttagaggg
     1681 ttcgcgcgat gaagatttac gacgaagagg agaccgtcat aagccgcgag gaggagaccg
     1741 tggccgcgcg ccgcgccgac ggctcgggcg cggcagggcc ggagatttcg ctcttcctcc
     1801 cggtgctcaa cgaggagccg aacctgcggc cgctgcacgc caagattgac gaggcgctcg
     1861 cggcgctcgg gcgcacggcc gaggtgattt acgtggacga cggctcttcg gacgggagcc
     1921 tcggagtcct gcgcgatctt gccgcgcgcg acccgcgcgt gcgcgtggtc gcgctcaggc
     1981 gcaactacgg gcagacggca gcgatggccg ccggcattga cgccgcgcgc ggccaggtct
     2041 tgataccgat ggacgccgac ctccagaacg acccggccga cataaaccgt ctgctcgaaa
     2101 agctggacga gggcttcgac gtggtctcgg gctggcgcaa ggagcggcag gacaagatgg
     2161 tctcgcgcaa aatcccctcg atgatagcga acaagatcat ctccttcatc ggcggcgtaa
     2221 agctccacga ctacggctgc tcgctgaaag cctaccgccg cgagttttta aaagaggtta
     2281 agctctacgg cgagatgcac cgcttcatac ccatctacgc ctcctgggtc ggcgcgcgcg
     2341 tcacggagat acccgtgcgc caccaccctc gcacgatggg caagtcgaag tacgggctgt
     2401 cgcgcacctt caaggtcatg ctcgacctga tgacgatcaa gttcatggcc tcctaccaca
     2461 ccaagcccat ctacgtcttc gggctcttcg gcttctcctc gttcatcatc tcggtcgtgg
     2521 ccttcgtctg ggccatactg cgcaagctcg gcggcgagtc cttcatccgc aacccgctct
     2581 tcaccatcgc gattgtgatg ttcgccgtcg gcgtgcagtt catactgatg ggccttctgg
     2641 ccgagatgct cgtgcgaacc taccacgagt cgcaggccaa gaccgtctat atcgtgcgcg
     2701 agcgcatagg cttcgtcgag tagctcccgc cgccccgggc cggcgggagt gcggtgcggg
     2761 cgccgcgtgt tgtatcttgg ccgcgtgacg gaagcgcagg agttcgagcg cgtttacgac
     2821 gcggcgcgtg cgtgggcggc cgagcgcgac tacgccggcc acgacccctt cgacgccctc
     2881 aacagccgcc tcttccgagc cacgcctctg cgtcgctcgc gcctcgcgcg cctagcctgg
     2941 acgcaggcgt tcaagcgctc ccccgtgaat ctgcggcgcc tcgcgctcgt ccccgaggag
     3001 cgaaacgcga aggggactgc gctgttcgcg ctcgcagcgc tctcgcgcct ccgcgcgacc
     3061 gggcgggagg agcacgcgat tgacgcgcgc accctcctcg actcgctcgt cgcctcgcgc
     3121 gtcgagaccg cgggcggcgg cgccgcgtgg ggctacaact tcgactggca gggccgcgcc
     3181 ttctacgcgc cgcgggggac gcccacggtc gtgcctacgg ccttcgccgt gcgcgccctg
     3241 gccgaagcct cgcgtgcttt cgggccgggc ggcgcggctt acctcgacgc ggcgcgccgc
     3301 gcgtgcgact tcatcctgaa agacctgaac cgctccgacg agaccgccga agatgtctgc
     3361 ttcagctaca cgtcgctcga cagcacgcgc gtcttcaacg cctctctgct cgcgggcgag
     3421 gcgctcgcca ccgtcggcgc ccggacgaac gaagcagagt tgaccgccgc ggcgctgcgc
     3481 gcctcgcgct acgtcgcccg cagacagcgc gcggacggct catgggccta cggcgccgac
     3541 tcttaccagt cgtggtctga caacttccac acggccttcg tcctgacctc gctcgcgcgc
     3601 atagtcgaaa ccgtagcggc cgacaacggc gacgcgcgcg aagaaatcct cggcgcgctc
     3661 gggcgcggct acgcgttctg gcgcgactcc ttctttcttg cggacggttg gccgaaatac
     3721 taccatcgct cggcgcaccc ggccgacacg cactcggcag gcgccgcaat cgtcgcctgc
     3781 gccgaactga gacagttaga gcccgacgcg acgggactgg ccgcgcgcgt cgcgtcctgg
     3841 gccgtccggg agctttacga ccggcgcggc ttcttccgct accagcgacg ccgactgctc
     3901 acggtgcgca cgccctacat gcgctggtcg caggcgtgga tgacatacgc gctggcgagg
     3961 tttttggaag cggtcggcgg tcagcggtca gccatcagca aagacgaaaa gctgattgcc
     4021 gacggctgaa agctggttgc taacccatgc gcatctggat tgaccttgcg aactcgccgc
     4081 acgtgccgtt cttccgcgcg ctcgcgcgcg agttccgtgc gcggggccac gaggtagagg
     4141 cgacggcccg ccgcttcgca cagaccgtgg agcttgcgga ggcggccggc ttccgggcct
     4201 cagtcgtcgg cggccacggg ggcgggaggc tctcgggcaa ggcaggcaac atagcggggc
     4261 gcgcgttggc tctggcgcgc tgggctcgcg ggcgcgggct cgacctcgcc gtgagccaca
     4321 actcttattc gcaggttctc gccgcgcgcc ttttgtcgtt gcgcgcggtg acgctgatgg
     4381 actacgagca tcagcccgcg aaccacctcg cgttccggct cgcctcgcgc gtcgtggtgc
     4441 cgggggcttt cccagacgag gcgctccgcc gcttcggcgc gtggcccgag aaggtgaggc
     4501 gctaccgagg catcaaggag gacgtttacc tcgccgactt cacgcccgac cccggcttcg
     4561 ccgcgctgct gcgcgagcgc ttcggcttcg agcacgaccg tcacgcgctc gtcgtcgtaa
     4621 ggcccccggc gagcgaggcc ctttaccacc gcttcgagaa cgagctgttc gacgaagtgc
     4681 tggcgcggct cgtcgcgcag gagggcgtga aggtcgtcgt gctcgcgcgc tccggggagc
     4741 agcgcgaggc tctgcgtgcg cgccacgcct cgcccgacct cttcgcgccg cgagaggctc
     4801 tggacggggc gaatctcgta gccgcggccg acctggtcgt gagcgcgggc gggacgatga
     4861 accgcgaggc cgccgcgctc ggcacgccgg ccgtgagcgc atacgcgggc cggtgggccg
     4921 ccgttgacga gcagctcgtg cgcgagggcc gcctgcgccg cgtggcgacg cgcgaagacg
     4981 cggaaagcct ccgcgtcgtc aagaagccgc cgcccccgcc ccgacgcggc gcgggcgtgc
     5041 gcgaagaggt cgcggagatg atattgtcgt aagtaatgcg aaggcactga ctgctgacag
     5101 cttctttctt gtgagggcgg agcgttcaca aaaggcgcgt gtgagggcga gcgaggtgcg
     5161 ggcggcggcg cgcgcgccgc gctgggccgt gccggccgtc aaggccgcac tcgtcgcggc
     5221 ggacgcgtgc gtcgcggtcg cggccttcgt cgcggcctac gcgctgcgcg agggcggcgg
     5281 cgtcctcgtc agcttcagcc tcggcgaggg cttcgtctgg gagccgcgct tcgagcccta
     5341 cggcgcgctg ctctggttcg tcgtcgcggc gcggctgctc acgctcgcct actacgacct
     5401 ctacaggctg cgcggcgagt tctcctactt ggacgacgcc gtgcgcgtct tcaaggcgac
     5461 ggccacggcc tctctactca tcgtcgcgtg ggcgttcctc taccgcggcg gctacgagtt
     5521 tcgggccttc tcctacgcgc gcggcgtctt cgtctatgac ttcgcgctcg cgctcgcctc
     5581 atacggcgcg ctccgcctcg ccgtgcgcgg cgtgcagagc gcggtgcgcc ggcgcgaggt
     5641 gaatttgatt ccgacgctcg tcgtcgggcg cggccacgag gcggcgctct acatccgcga
     5701 gacgcgcgag cggagggagg tgggctacag ggtcatcggc gtcgtcgaga ccgagacgag
     5761 cgcggccgag gcgccggccg agttcgaggg cgtgcccgtc gtcgccgacc tcgacggcct
     5821 gcacgacgcc atccgcgaga cgggcgccaa cgaggtcgtc atcaccgaca cgtccgtgcc
     5881 gggcgagctt ctgttcgacg tgacgctgcg cgtcg
//
LOCUS       DASPKR010000569         3154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_729115, whole genome shotgun sequence.
ACCESSION   DASPKR010000569 DASPKR010000000
VERSION     DASPKR010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3154)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3154
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_729115"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1171
                     /locus_tag="VD968_15325"
     CDS             <1..1171
                     /locus_tag="VD968_15325"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HYE15814.1"
                     /translation="LKVIQDQIANHTSPYHPWATDRPTPTWFYGTVESHLSNNWQKWT
                     AMDPSATEETKRRNLEGWFIDILPDLNQDDEEVRRYLIQNTLWWLGMVGFDAIRMDTL
                     PHVPRHFWRDWSAAIKREYPQVNVLGELFDGDPALLAYFQRGRAGHDGIDTGIDTLYD
                     FALFYAVRDSFAKGQSVRKLAQVLAHDWLYPNPGVLVPFLGVHDMERFMNEKGATTQG
                     LKLAQTFIMTTRGTPLLYYGDELAMPGAGDPDNRRDFPGGFPGDARNAFRKEGRTAAE
                     NDVFNHLRTLAGVRAASPALRRGALLHLHDGEQQTVFARVHEGERVLIAFNNDTQPAT
                     FDFDVRPAGLADGVGVNNLLDADVNGRVAGGRLRLTLPARTSAVLTEFREVRGRD"
     gene            1177..1902
                     /locus_tag="VD968_15330"
     CDS             1177..1902
                     /locus_tag="VD968_15330"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE15815.1"
                     /translation="MTLKSKSLSEQTAVVTGGGTGIGRAFAAALAREGVLVVIASRRE
                     EVLHKAAEEMNAEAGARRIFPYAFDVRDRAQCEALVAHVNSELGSLDVLVNNSGLAVP
                     ETVTEITGEGWDKVLETNLKGAMWLVRAALPLMTAAGFGDIVNVSSQAGKHGYADVPS
                     YCASKWALLGFAESVRDHVRKEGANVRVFNFCPGLVDVENVAPGQSPRPGFVHVSNMA
                     KTLMYALSLDREVVLEDINIYAR"
     gene            1934..>3154
                     /locus_tag="VD968_15335"
     CDS             1934..>3154
                     /locus_tag="VD968_15335"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE15816.1"
                     /translation="MREKPRLSFWQIWNMSFGFMGIQFGWGLQLANMSGIYTYLGAKP
                     EEVPILWLAGPVTGLLVQPVVGSMSDRTWNRLGRRRPYFLIGAILASIALFFMPDSPL
                     LWIAAGLLWILDASINVSMEPFRAFVADKLNTDQRTAGFVMQSFFIGIGQTLANFLPY
                     LFRRMGMDEPTAGAADAAVRTIPASVNYAFKIGAVAFLLCVLWTVITSKEYPPEDMEE
                     FERKRREHRGLGATVAALFREIASAMREMPTTMKQLAVVQFFTWLGLFCMWMFFGLMT
                     SYHVFGARSERDPLFTDGQAWGGIGFMIYSIVCFAIAFLLPPLARATSRKTVHAASLV
                     CGAAGLLSVYFIQDKNILLLTMVGVGIAWASILSMPYAILSGALPPTRMGVYMGVFNF
                     FIVIPEIIASFTFGP"
BASE COUNT          524 a         1078 c         1013 g          539 t
ORIGIN      
        1 cctcaaagtc atacaggatc agatagccaa ccacacgagc ccttaccacc cttgggcgac
       61 cgaccgcccg acgccgacct ggttctacgg cacggtggag agccacctct cgaacaactg
      121 gcagaagtgg acggcgatgg atccgagcgc cacggaggag acgaagcggc gcaacctcga
      181 aggctggttc atagacatat tgcccgacct caatcaggac gacgaggagg ttcgccgcta
      241 cctcatacag aacacgctct ggtggctcgg catggtcggc ttcgacgcga taaggatgga
      301 cactctgccg cacgtccccc gccacttctg gcgcgactgg tcggcggcga taaagcgtga
      361 gtacccgcag gtgaacgtcc tcggcgagct gttcgacggc gacccggcgc ttctcgccta
      421 cttccagcgc gggcgagcgg gccacgacgg catagacacc ggcatcgaca cgctctacga
      481 cttcgcgctc ttctacgccg tgcgcgactc gttcgcgaag gggcagtccg tccgcaagct
      541 cgcgcaggtg ctcgcgcacg actggctcta cccgaacccg ggcgtgctcg tcccgttcct
      601 cggcgtccac gacatggagc gcttcatgaa cgagaagggc gcgaccactc agggccttaa
      661 gctcgcgcag accttcatca tgacgacgcg cggcacgccg ctgctctact acggcgacga
      721 gctggcgatg cccggcgcgg gcgaccccga caaccgccgt gactttccgg gcggcttccc
      781 aggcgacgcg cgcaacgcct tcaggaagga gggccgcact gccgccgaga acgacgtctt
      841 caaccacctc cgcacgctcg cgggagtgcg cgcggcctcc ccggcgctgc gccgcggcgc
      901 cctgctgcat ctccacgacg gcgagcaaca gaccgtcttt gcgcgcgtgc acgagggcga
      961 gcgcgtcctc atcgctttca acaacgacac acagccggcg accttcgact tcgacgtgcg
     1021 gcccgcgggc cttgccgacg gtgtgggcgt caacaacctg ctcgacgccg acgtgaacgg
     1081 gcgcgtggcc ggcgggcgcc tgaggctgac gctccccgcg cgcacgtcgg ccgtgctgac
     1141 tgagttccgc gaggtgcgcg ggcgggactg aagcagatga cgctgaagag taaatcactc
     1201 tcggagcaga cggccgtcgt cacgggcgga ggcacgggca tcggccgcgc cttcgccgcg
     1261 gcgctcgcgc gcgagggggt gctggtggtt atcgcctcac ggcgcgagga agtgctgcac
     1321 aaggcggccg aagagatgaa cgcggaggcc ggcgcgcgac gcatcttccc ctacgccttc
     1381 gacgtccgcg accgcgctca gtgcgaggcg ctcgtcgcgc acgtcaacag tgagctgggc
     1441 tcgctcgacg tgctcgtaaa caactcgggg ctcgctgtcc ccgagaccgt gacggagata
     1501 accggcgagg gctgggacaa ggttcttgag acgaacctga agggcgcgat gtggctcgtg
     1561 cgcgcggcac tccctttgat gacggccgcg ggcttcggcg acatcgtcaa cgtctcgtcg
     1621 caggccggca agcacggcta cgccgacgtg ccgtcctact gcgcgtcgaa gtgggccctg
     1681 ctcggcttcg ccgagtctgt gcgcgaccac gtgcgcaagg agggggcgaa cgtccgcgtc
     1741 ttcaacttct gccccggcct cgttgacgtg gagaacgtgg cgccgggcca aagcccgcgc
     1801 cccggcttcg tgcacgtctc gaacatggcg aagacgttga tgtacgcgct ctcgctcgac
     1861 cgcgaagtgg tgctcgaaga cataaacatc tacgcgaggt agctgtcagc tttcccgaga
     1921 ggagcgaaga acgatgcgtg agaaaccgcg cctgagcttc tggcaaatct ggaacatgag
     1981 tttcgggttc atgggcatac agttcggctg gggcttgcag cttgctaaca tgagcggcat
     2041 ctacacatac ctcggcgcga agcccgagga ggtgccgata ctctggctcg ccgggcccgt
     2101 gacgggcctg ctcgtgcagc ccgtcgtagg ctcgatgagc gaccgcacgt ggaaccggct
     2161 ggggcgccgc cgcccctact tcctcatcgg cgccatactc gccagcatcg ccctcttctt
     2221 catgccggac tcgccgctgc tctggatcgc ggcggggctt ttgtggattc tcgacgcctc
     2281 gattaacgtc tcgatggagc cgttccgcgc cttcgtcgcc gacaagctca acaccgacca
     2341 gcgcacggcc ggcttcgtca tgcagagctt cttcatcggc atcggccaga cgctcgcgaa
     2401 cttcctgccc tacctcttcc gccggatggg catggacgag ccgaccgccg gcgcggccga
     2461 cgcggcggtg cgcaccatcc ccgcgagcgt caattacgcc ttcaagatcg gcgccgtcgc
     2521 cttcctgctc tgcgtgctct ggactgtgat tacgtcgaag gagtacccgc ccgaggacat
     2581 ggaagagttc gagcgcaagc ggcgcgagca ccggggcttg ggcgcgaccg tcgcggcgct
     2641 cttccgcgag atcgcgagcg cgatgcgcga gatgccgacg acgatgaagc agctcgccgt
     2701 cgtccagttc ttcacgtggc tcggcctgtt ctgcatgtgg atgttcttcg ggctgatgac
     2761 ctcctaccac gtcttcggcg cgaggagcga gcgcgacccg ctcttcaccg acgggcaggc
     2821 gtggggcggc atcggcttca tgatctactc gatcgtctgc ttcgccatcg ccttcctact
     2881 gccgccgctc gcgcgcgcca cctcgcgcaa gacggtgcac gccgcctcgc tcgtgtgcgg
     2941 cgccgccggg ctcctgtcgg tctatttcat acaggacaaa aacatcctgc tgctgacgat
     3001 ggtgggcgtc ggcatcgcgt gggcctcgat actctcgatg ccgtacgcga tactctcggg
     3061 cgcgctcccg ccgacgcgga tgggcgttta catgggcgtc ttcaacttct tcatcgtcat
     3121 ccccgagata attgcctcgt tcacctttgg cccg
//
LOCUS       DASPKR010000570         6263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_991719, whole genome shotgun sequence.
ACCESSION   DASPKR010000570 DASPKR010000000
VERSION     DASPKR010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6263)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6263
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_991719"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2053
                     /locus_tag="VD968_15340"
     CDS             <1..2053
                     /locus_tag="VD968_15340"
                     /inference="COORDINATES: protein motif:HMM:NF016736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HYE15817.1"
                     /translation="GQVPFRTTHGLDVLPVEGQVYYKRPVENPSAKVREYYEQLYASF
                     KDPDAPSTAQLALYETLPFPTATKTRVDLGADTIDGSLWVALMVRANDKPYADTVAQA
                     RREIAGKTISLGVVPYTEVDETELVPGGGRRQRADTALLQYQLPKLPPGGSLPREGGE
                     RVAQYRVLSASSEGDVLAAPGVVQITLPSEASELELWNNLDPLEAGSDKFPPTLEDTE
                     QNERVITWLRVTSTGAASAKLVWVGINAASVEQRARISGELLPLGTGEPDQQAFLSKP
                     PVIAGSVRVVVNNDQKRPWKAVEDLYTAGPEVPGRDERQPPGQASTRKAPTDVFLVNH
                     ESGAIRFGDGAHGRRPPFGATIRADYDYGVGRQGNVGVDSISSAPSLPAGLKVSNPVP
                     TWGGADAETAKDGERQITRYLQHRDRMVNAQDFETITLRTPGVVVGRVEVLPAFNPSL
                     APNKGGDAPGAVTLLVIPKYDPAHPDTPEPDRHFMDAVCAHVDARRLVTTEIFLRGPV
                     YKVIWISVGIETVPGASVGEVREAVKREIAKFLSPLPPEGGDALDEQVLLSTSPQYQR
                     MLKGWPLGKPVAPLELLAVASRVPGVLQVNKVYVADEAMHAARRSETPDSPSCDDLPV
                     LMTGLELPRVGALSVAVGEALPISQLRGDEDLPTVKDGEQPPAGAPPQVVPVPVVPLE
                     C"
     gene            2102..2653
                     /locus_tag="VD968_15345"
     CDS             2102..2653
                     /locus_tag="VD968_15345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15818.1"
                     /translation="MDVNGTRFQLLLGRDDWRYCLDWQMRPLGQGWKPRESGGLAGKE
                     TGLDWDEKRSELTLHQRLAQFRAAPSDAAPTLKARRGAARDRYGNWYWISVSRVEILT
                     SSSGRGRAAHFWSCGDAQKCEPEWPAAGGGFLPCGAEPPAAPAELSGLAVTDDHYLVV
                     GTLRPAGLLVFDLHAGGAPRRMF"
     gene            2684..5200
                     /locus_tag="VD968_15350"
     CDS             2684..5200
                     /locus_tag="VD968_15350"
                     /inference="COORDINATES: protein motif:HMM:TIGR02242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HYE15819.1"
                     /translation="MAAAPGGGAFVLDRANSRYWLLDRFFNVVAAAPSSPPAAAQERE
                     EFFAPEDGSEQAHGEVCRSEGVQLTAEAAMPLDVTDPIAIETLPGGDVLILDGNPDEP
                     APPVLRFSRIHRFREGRRVGQFVTTEAVLARIEEDGEPFKLLAHDFAFAAAKDERKRG
                     LLGRLYVADRGGNQTYVFELREGEGGQLTLGALPDYLPMRLFGGKAVVAAGGKAFYDF
                     GDRWIPLVKQPRPRFTPEAVIFTPLNDAGLGTEELLARGLRNAFDGREPDCTWHRLFI
                     DACIPPGTEVQVWSRAANEQRELALAAWMPEPRLYLRAKGSELPAAPAPPAADGAGTW
                     ELLFQNARGRYLQLQLRLVGNGRSSPRLHALRAYYPRFSYLTNYLPAVYREDSGSASF
                     LDRFLSNVEGFFTTIEDKVAAAQALLDPRTAPAEALDWLAAWFGVALDPAWGTAKRRL
                     FIRHAAEFFELRGTVRGIETALRLVLEDCVDESVFEEEDPERRRPSGIRLVERFRTRR
                     TPAVVLGDPTDFQGTPAGLRTTRWLAAQQPAAPAASAQPGAFEGETAGCRCAGKKKAK
                     GETAAAAALDAEGERAVAEERAGWQRFLATRYVNFEAMNSAYAQSQVPPVTSFADVRL
                     PADAPPSGAPRTDWQQWLAASSAAGASVVRSLWQDFLKRRYGQALAMNRAHGTRWSSF
                     AAVSLPDGAPKRNAPLNDWQQFTGVVLQMHRTAHRFTVLLPMPRAFYEDARAHKERRA
                     LAERVTNLEKPPHTAFDVKFYWDAFRLGEARLGSGTFIDAGSRAPQLIQPAVLGRTYV
                     AESYLAPSHPQSVADRRVLGRDELGAGSQPSERSNRHGTV"
     gene            5187..>6263
                     /locus_tag="VD968_15355"
     CDS             5187..>6263
                     /locus_tag="VD968_15355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15820.1"
                     /translation="MEPFKPRVTARDAAPDPSKHVKYTVGMVLGADDFTQEFAYLSGR
                     DRWLARDLIGYGTAWGLKVGYEVEGQKGPRVVVEPGVAVAPSGQLIRVAPAQCAQLNA
                     WLASNRAEAESRFVTSSSPPGTALSLYVVLCYRECPTDMVPIPGEPCRDENELMAPSR
                     LADDFRLELRFEPPEQTEEDAVRDFVEWLKGIEVVEAGGSTLEDFLAAVREASHLWKS
                     PPDSPPTDYMYGSPPAGVTIPASRVCQYLRAAFRVWTTELRPRWRPEWFDSHPCCEEH
                     TQDKEKKKPEECVLLAELRVPLVHDAINDVWKVSDTADVQINEERRPYLLSLRMIQEW
                     LLCGGGAAGMTPAAEGGAGGGAGSG"
BASE COUNT          983 a         2240 c         2131 g          909 t
ORIGIN      
        1 cgggcaggtt ccgttccgca ccacccacgg cctcgacgtg cttcccgtcg agggccaggt
       61 ctattacaag cgcccggtgg agaacccttc ggccaaggtg cgagagtatt acgagcagct
      121 ctacgcttcg ttcaaagacc cggacgcgcc ctcgaccgcg cagctcgcgc tctacgagac
      181 gctcccgttc cccacagcca ccaagacgcg cgttgacctc ggcgccgaca ccattgacgg
      241 ctcgctctgg gtggcgctga tggtgagggc gaacgacaag ccctacgccg acactgtcgc
      301 gcaggcgcgg cgcgagatag ctgggaagac tattagcctc ggcgtcgtgc cttacacgga
      361 agtggacgag acggagcttg tgccgggcgg cggccggcgg cagcgcgccg acacagcgct
      421 cctccagtac caactcccga agctcccgcc gggcggctcg ctcccgcgcg aaggaggcga
      481 gcgcgtcgct cagtaccgcg tgctctcggc ctcctcagag ggcgacgtgc tcgccgcgcc
      541 cggcgtcgtg cagataactc tgccttcgga ggcgtcggag ctcgagctct ggaacaacct
      601 cgacccgctc gaagccggct ccgacaagtt cccgcccacg ctcgaagaca ccgagcagaa
      661 cgagcgcgtc ataacgtggc ttcgcgttac ctcaaccggc gcggcctcgg cgaagctagt
      721 ctgggtcggc atcaacgccg catcggtcga gcagcgggcg cgaatctcgg gagagcttct
      781 gccgctgggc acgggcgagc ccgaccagca ggctttcctg tcgaagccgc ccgtcatcgc
      841 aggctcagtc cgcgtcgtcg tcaacaacga ccagaagcgg ccgtggaagg ccgtggaaga
      901 cctttacacg gcaggccccg aagtgccggg ccgcgacgag cgccagccgc ccggtcaggc
      961 gagcacgcgc aaggctccga ccgacgtgtt tctcgtcaac cacgagtcgg gcgcaatccg
     1021 cttcggcgac ggcgcgcacg gccggcggcc ccccttcggc gcgaccatcc gtgcggatta
     1081 cgactacggc gtagggcggc aggggaacgt cggagttgac tcgatcagca gcgcgccgtc
     1141 gctcccggcg ggcctgaagg tcagcaaccc cgtgcctaca tggggcggcg cagacgccga
     1201 gacagccaaa gacggcgagc ggcagataac ccgctacctc cagcacagag accgcatggt
     1261 gaacgcgcag gactttgaga ccatcacgct gcgcacgccc ggcgtcgtgg tcgggcgcgt
     1321 cgaggtgctg ccggccttca acccctcgct cgcgcctaac aagggcggcg acgcgcccgg
     1381 cgccgtcacg ctgctcgtca tcccgaagta cgacccggcg caccccgaca cgcccgagcc
     1441 cgaccgccac ttcatggacg ccgtctgcgc tcacgttgac gcgcgccgcc tcgtcaccac
     1501 cgagattttc ctgcgcggcc ccgtttacaa agtcatctgg atttcagtcg gcatcgagac
     1561 ggtgccgggc gcgtcagtcg gcgaggtgcg cgaggccgta aagcgcgaga tagcgaagtt
     1621 cctttcgccg ctcccgcccg agggcggcga cgcgctcgac gagcaggtgc tcctgagcac
     1681 ctcgccgcag taccagcgca tgctgaaggg ctggccgctg ggcaagcccg ttgcgccgct
     1741 cgaactcctg gccgtcgcga gccgcgtccc cggcgtgctc caggtcaaca aggtctatgt
     1801 ggctgacgag gccatgcacg cggcgcggcg gagcgagact cccgactcgc cctcttgcga
     1861 cgacctgcca gttctgatga cgggattgga gcttccgcgc gtgggcgcgc tgagcgtcgc
     1921 cgtcggcgag gcgctgccga taagccagct ccgcggcgac gaagacctgc ccaccgtcaa
     1981 ggacggcgag cagcctccgg ccggcgctcc gccgcaggtc gtccccgtcc ccgtcgtccc
     2041 gctcgaatgt tgattagcag tcagctattg ctgaccgctg atagttgaca gcttcaactt
     2101 tatggacgta aacggcacac gctttcagct cctgctaggc cgcgacgact ggcggtactg
     2161 cctcgactgg cagatgcgcc cgctcgggca gggctggaag ccgcgcgagt cgggcgggct
     2221 cgctgggaag gagacggggc ttgattggga cgagaagcgc tccgagctaa cgcttcacca
     2281 gaggctcgcg cagttccgtg ccgccccgtc ggacgcggcg ccgacgctca aggcgcgccg
     2341 cggcgccgcg cgcgaccgct acggcaactg gtactggata agcgtgtcgc gcgttgaaat
     2401 cctgacctct tcgagcggca ggggccgcgc agcgcacttc tggtcgtgcg gcgacgcgca
     2461 gaagtgcgag ccggaatggc cggcggccgg cggcggcttc ctgccttgcg gcgcagagcc
     2521 gcccgcggcg cccgcggagt tgtccggcct tgccgtgacg gacgaccact acctagtcgt
     2581 cggcacgctc aggccggccg ggttgctcgt attcgacctc cacgcgggcg gcgcgccgcg
     2641 ccgaatgttc tgacccgatg aggttgcgtt cgcgccattc gacatggcgg ccgcgccggg
     2701 cggcggcgcc ttcgtcctcg accgcgccaa ctcacgatac tggttgctcg accgcttctt
     2761 caacgtcgtg gcggcagcgc cgtcgagccc gcccgccgcg gcgcaggagc gcgaagagtt
     2821 tttcgcccct gaggacggga gcgagcaggc gcacggagaa gtctgccgtt cggaaggcgt
     2881 gcagctcacg gccgaggccg cgatgcccct cgacgttacc gaccccatcg caatcgaaac
     2941 gctgcccggc ggcgacgtgc tcatactcga cggcaacccc gacgagcccg cgccgcccgt
     3001 cctgcgcttc tcgcgaatcc accgcttccg cgaaggccgt cgcgtcggcc agttcgtcac
     3061 gaccgaagcc gtgctcgcgc gcatagagga ggacggcgag cctttcaaac tgctcgcgca
     3121 cgacttcgcc ttcgcggccg cgaaggacga gcgcaagcga gggctgctcg ggcgcctcta
     3181 cgtcgcggat cgcggcggca accagactta cgttttcgag ctacgcgagg gcgagggcgg
     3241 gcagttgacg ttgggagcgc tgccggacta cctgccgatg cggctgtttg gcgggaaggc
     3301 agtcgtcgcg gcgggcggca aagccttcta cgacttcggc gaccgctgga taccgctggt
     3361 gaaacagccg cgcccgcgct tcactcccga ggccgtcatc ttcacgccgc tcaacgacgc
     3421 cgggctcggc accgaagagt tgctcgcgcg gggcctgcgc aacgcattcg acggccgcga
     3481 gcccgactgc acatggcaca ggctcttcat agacgcctgc atcccgcccg gcaccgaagt
     3541 gcaggtctgg agccgcgccg ccaacgagca gcgcgagctt gcgctcgctg cgtggatgcc
     3601 ggagccgcgg ctctacctcc gcgcgaaagg ctcggagctg cccgcagcgc ccgcgccgcc
     3661 cgcggccgac ggcgcaggca cgtgggagct cctcttccag aacgcgcgcg ggcgctacct
     3721 tcaacttcag ttgaggctcg taggcaacgg ccgttctagc ccgcgccttc acgcgctgcg
     3781 agcgtactac ccgcgcttct cgtaccttac gaactacctg ccggccgtct atcgcgaaga
     3841 ctcgggctcg gcctcgttcc tcgaccgctt cctctcgaac gtcgagggct tcttcacgac
     3901 gattgaggac aaggtcgccg cggcgcaagc ccttctcgac cctcgaacgg cgccggccga
     3961 ggcgctcgac tggctcgccg cctggttcgg cgtcgcgctc gaccccgcgt ggggcacggc
     4021 gaagcgccgc ctcttcatca ggcacgccgc agagttcttc gagcttcgcg ggacggtgcg
     4081 cgggatagag acggcgctca ggctcgtgct cgaagactgc gttgacgagt cggtgttcga
     4141 ggaggaagac cccgagcggc gccgcccgag cggcatccgt ctcgtcgaga ggttccgcac
     4201 gcgccgcacg cctgcggtcg tcctcggcga ccccacggac ttccagggca cgcccgcggg
     4261 actgcgcacg acgcgctggc tcgcggcaca gcagccagcc gccccggccg ctagcgcgca
     4321 gcccggcgcc ttcgagggcg agacggccgg ttgccgctgc gccggtaaga agaaggcgaa
     4381 gggcgagacg gccgcggccg cggcgctcga cgcggagggc gagcgcgcag tcgccgaaga
     4441 gcgcgccggc tggcaacggt ttctcgccac gcgctacgtg aacttcgaag caatgaactc
     4501 cgcatacgcg cagagccagg ttccgcccgt cacctccttc gcggacgttc gcctcccggc
     4561 ggacgccccg ccctcgggag ccccgcgcac cgactggcag cagtggctgg ccgcctcgtc
     4621 ggcggcgggc gcctccgtag tgcgctcgct ctggcaggac ttcctcaagc gccgctacgg
     4681 gcaggcgctc gccatgaacc gtgcgcacgg cacgcgctgg tcatcattcg cggccgtgtc
     4741 gctccccgac ggggcgccga agaggaacgc gccgctaaac gactggcagc agttcacggg
     4801 cgtcgtgttg cagatgcaca ggacggcgca ccgcttcacg gtgctcctgc cgatgccgcg
     4861 agccttctac gaggacgcgc gggcgcacaa ggagcgccgc gcgttagccg agagggtcac
     4921 gaacctcgag aagccgccgc acacggcctt cgacgtgaag ttctactggg acgccttccg
     4981 gctgggcgag gcccggctcg gctcggggac gttcattgac gcgggcagcc gcgccccgca
     5041 actcatacag cccgcagtcc tcggccgcac ctacgtcgcg gagagctacc tcgcgccgtc
     5101 tcaccctcag tcggtcgcag accgcagagt gctcgggcga gacgaattgg gcgcggggag
     5161 ccaaccttcg gagaggagca accgccatgg aaccgtttaa gccgcgcgtg accgccaggg
     5221 acgccgcgcc cgacccctcc aagcacgtca agtacaccgt cgggatggtg ctcggcgccg
     5281 acgacttcac gcaggagttc gcctacctct ccgggcgcga ccgctggctc gcgcgcgacc
     5341 tcataggtta cggcacggcc tgggggctca aggtcggcta cgaggtcgag ggccagaagg
     5401 ggccgcgcgt cgtcgtggag ccgggcgtgg cggtggcgcc ctcggggcag ctaatcaggg
     5461 tcgcgcccgc gcagtgcgcg cagctcaacg cgtggctggc ctcgaaccgc gccgaggccg
     5521 agtcgcgctt cgtcacctcg tcgtcgccgc cggggactgc gctctcgctc tacgtcgtgc
     5581 tgtgctaccg cgaatgcccg accgacatgg tgccgatacc cggcgagccg tgccgcgacg
     5641 agaacgagct tatggcgccg tcgcgcctgg cggacgactt ccgtttggag cttcgcttcg
     5701 agccgcccga gcagacggag gaggacgccg tccgcgactt cgtcgagtgg ctcaaaggca
     5761 tagaggtcgt cgaagcgggc ggctcgactc tcgaagactt cctcgccgcg gtccgcgagg
     5821 cttcgcacct ctggaagtcg ccgcccgact ccccgcccac cgattacatg tacggctcgc
     5881 cgcccgcggg cgtcacgata cccgcgagcc gcgtctgcca gtacctgcgc gcggcattcc
     5941 gcgtctggac gacggagctg cgaccgcgct ggcggcccga gtggttcgac tcgcacccgt
     6001 gctgcgagga gcacacgcag gacaaggaga aaaagaagcc ggaggagtgc gtcctgctcg
     6061 ccgagctccg cgtgcctctc gtccacgacg ccatcaacga cgtgtggaag gtctccgaca
     6121 cggccgacgt tcagatcaac gaggagcgcc gcccgtacct tttgagcctc cggatgattc
     6181 aggagtggct gctgtgcggc ggcggggccg cgggcatgac gccggcggcc gaaggcggcg
     6241 ccgggggagg cgcgggctcg ggc
//
LOCUS       DASPKR010000571        25626 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_343560, whole genome shotgun sequence.
ACCESSION   DASPKR010000571 DASPKR010000000
VERSION     DASPKR010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 25626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25626)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25626
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343560"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2505
                     /locus_tag="VD968_15360"
     CDS             <1..2505
                     /locus_tag="VD968_15360"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HYE15821.1"
                     /translation="IGSLDDLTAASMEDVKGFFRRYYVPNNASLVIAGDFDPSEARRL
                     VEKYFGPIQKGDPVKPVTAPRPKLDREVRVNMEDRVQLPRVQFVWTAVPAFDRDEAAL
                     DTLAEILGGGKSSRLYKSLVYEKQIAQQVSAFNPAGEIAGTFQITVTGKPDITPAQLE
                     EAVKAELARLKTEPPSAREVERAYNSREASFIYGLQTVGGFGGKDDQLNAYATYLKKP
                     GYFEQDLARYRAVRVADVRRVADQYLTDKRIVLTVVPRAAGSGGGGGPAAAAPREAIA
                     PPAAQTAGQQQAGAANAASQTPRTGTAQGAQGAQGSTPAGTQPVTKTEAAATQPAGAA
                     PPTSSAPATAPRTGAQARQGSAAKPKKPEQIVDTSKLPKPGPNPKFTLPPVQRRTLSN
                     GLEVLVVEHHELPIVNLNLVVKMGAAGDPADQAGLASLVADMLDEGTKTRSALDISDQ
                     LAFIGASMGVGAGWDSSTASLTTLTRHLDRALDIYADVILNPAFPDKELARLRATRMT
                     SFRQRRDDPNQIAGIVYTSLLYGKGHPYGHPLTGDEASLQAITGESVRKFYETFYRPN
                     NSALVVVGDVKPDDITARLERAFGKWEKAHVPAVDVSAAPQPRDRTQIFVVDRPGSAQ
                     SVIQIGHVGVPRSNPDYFPLLVLNTMLGGQFTSRINLNLREEKGYTYGARSSFDFRRG
                     AGPFTASAPVQTAVTKESVMELMKELRGIRGEIPVTPAELEYAKQAIIRGFPRSFETP
                     GQIGDRLETLVTYDLPSTYFNTYIERVQAVTLEDINRVAGRYLQPERMAVVIVGDRKV
                     IEQGLRSLDDLGGHITFVDTEGRPAAQGGSSGGDSR"
     gene            complement(2584..3258)
                     /locus_tag="VD968_15365"
     CDS             complement(2584..3258)
                     /locus_tag="VD968_15365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15822.1"
                     /translation="MPSRKLRAAVLPAAALLLFAALAPPARAQDEGSPPQPSRGAQAK
                     RDDTNLELHLHMLLASNAEGQRGEVPRELEGVVRQLKASLPYSQHRLVTTFLHRVKDG
                     GNTLEVSSVGPSLLTQSQAQQLTAPTFYQFSVGGVRLAEGASGQTFVQVPRFRFTLRV
                     PVQTAAVAPAAGDAPGYPVIQYENVGMTTDFSAREGEPTVVGTLTTRRPDEVFVVVFT
                     IRRAAR"
     gene            complement(3403..4254)
                     /locus_tag="VD968_15370"
     CDS             complement(3403..4254)
                     /locus_tag="VD968_15370"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE15823.1"
                     /translation="MEPLIDIALARRLEGADARAGEEYAAAHARLFPEAGASVLAVAG
                     GRAVLAGVSSPLTHAVGLGLGPAAEPEEPEEFFRAEAERMEEFFRARGAETASVEFCP
                     LADFTLLGLLVSRGYRLTELTDKLFLPLGTRPPLAAEPDGVSVRVAGEHEGGLWARTV
                     AESFALSGREVTPAFLEIFRATLAVRGGVCFIAEVEGRVAGGGFLRLDGEAAALSGTG
                     VLPHMRGRGVQAALIRARLAHAARAGCDLAAVSALPGSTSHRNLERQGFRVAYTRARL
                     AKSLAED"
     gene            complement(4291..4734)
                     /locus_tag="VD968_15375"
     CDS             complement(4291..4734)
                     /locus_tag="VD968_15375"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYE15824.1"
                     /translation="MKGKSDEWPDDFPVAQVRVARPTARLAEVVRFYRDALGLRQVGE
                     FRGHAGYDGVMLGLPGAAYHLEFTSHQDGSDCPAPSRDNLLVLYIPDAAAFERARRRL
                     GERGHAPVEPENPYWAGRGLTYEDPDGWRVVLMNTAGISAPAEDS"
     gene            complement(4731..5813)
                     /gene="rsgA"
                     /locus_tag="VD968_15380"
     CDS             complement(4731..5813)
                     /gene="rsgA"
                     /locus_tag="VD968_15380"
                     /inference="COORDINATES: protein motif:HMM:TIGR00157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HYE15825.1"
                     /translation="MTAGQSLTLEDYGWDERFAAEFAPLAGEGFEPARVFLQHNKVYM
                     LYAESGEVWAEPTGRLRYLAREAADLPAVGDWVALRRTADEGKAKIHEVLPRRSKFSR
                     KAAGRETEEQIVAANVDTVFLVTGLDNDFNPRRVERYLIMAWESGAEPVVVLNKADLA
                     QDADEKLREIERVAPGVPVHLLSAKLGRGVEQLEPYVWRGRTVALMGSSGVGKSTIVN
                     RLLGSEVQRTQEVRLHDARGKHTTTHRELFLLPRGGLLLDTPGMRELQLLVSERGLRE
                     TFEDVGEAASRCRFTDCRHEGEPGCAVREALEAGELDPERFASYRKMQAEMRQVAIKQ
                     DQRKSQEERARVKRVTRAFNKTDKRR"
     gene            complement(5813..6247)
                     /locus_tag="VD968_15385"
     CDS             complement(5813..6247)
                     /locus_tag="VD968_15385"
                     /inference="COORDINATES: protein motif:HMM:NF013052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HYE15826.1"
                     /translation="MSKANGGSAPGIEVRPSGIDGRGCFATAPFKKGRKIVELVGERV
                     SRVEAARRMRGKQRLHICAIDSYWGIDGSRGGNGSQFINHSCEPNSFIRIIRGHIIFF
                     ALRDIEPGEEITLDYIESYHPDTKRCRCGAARCRGTINLLMK"
     gene            complement(6269..7003)
                     /locus_tag="VD968_15390"
     CDS             complement(6269..7003)
                     /locus_tag="VD968_15390"
                     /inference="COORDINATES: protein motif:HMM:NF018626.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1287 domain-containing protein"
                     /protein_id="HYE15827.1"
                     /translation="MRKRVTTIRQSKVWRCCTASALVLSAGCGLRATVSQTAAPAPVR
                     QEQAAPAPRPSSGSAFLDRLVEAAIERTTQQVRYDPTYFKIDYPGGDVPAEVGVCTDE
                     VIRSYRRVGVDLQKEVHEDMKANFGAYPRKWGLKKPDTNIDHRRVPNLMVFFERQGAS
                     LAVTEEAADYKPGDVVTWDLGAGLTHIGIVVNVPSGTDPRRLLIVHNIGAGPKMEDVL
                     FSWKITGHYRYEGPKEQGAVKRAGGD"
     gene            7128..7262
                     /locus_tag="VD968_15395"
     CDS             7128..7262
                     /locus_tag="VD968_15395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15828.1"
                     /translation="MTEDERRQRMDFIIEQQAQLAANQRRQRSVLRTTRTSGRRRQKA
                     "
     gene            7376..8473
                     /gene="rlmN"
                     /locus_tag="VD968_15400"
     CDS             7376..8473
                     /gene="rlmN"
                     /locus_tag="VD968_15400"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: protein motif:HMM:TIGR00048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HYE15829.1"
                     /translation="MGELTHLTGLTREELGRYVEGLGEPAYRGRQVFAALHRRRLRSF
                     EEMTDLPKSFRARLAESATASTLKVESRYVASDGTRRYLMKTSDGLPVETVFIPEERR
                     DTICFSSQSGCPLQCDFCLTAKLGLLRTLAAGEMVEQIIVALNDAYGVGAKTPRGTNL
                     VAMGAGEPFLAFEPLMKALRVMADPDGLFIVPNRVTVSTAGVVPKIRELARVPDRPHL
                     AISLAAPTDELRDRLMPINKRWPLEELLAACKEFEQSLRPGERFTFEYVMLDGVNDSD
                     AHARQLANLLNRHQLRAKVNLIPHNPAEGLPYRPSPEERVQAFKAILESKGVRAFVRR
                     PRGRDIYAACGQLAARTSVPAAADRPVQIQT"
     gene            8499..9083
                     /locus_tag="VD968_15405"
     CDS             8499..9083
                     /locus_tag="VD968_15405"
                     /inference="COORDINATES: protein motif:HMM:NF022853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD
                     domain-containing protein"
                     /protein_id="HYE15830.1"
                     /translation="MRRKNYARLMTLVVLVAALLAPPAFTRTSAAPLQAGNIGINGFF
                     SVDPAQQGSTFQAAVVLDIPRGLHVNANKPLGKYAVPTTVKIDAPRGFKITPVTYPRG
                     SVRTFRFGGAEAERLAVYEGLAVVRFNVSVPANHEIGVARVRATVRYQSCTDEVCFPP
                     ATREIVLPIAIVPAGTPVNRINHRYFGGGGRRRR"
     gene            complement(9117..9986)
                     /gene="pgeF"
                     /locus_tag="VD968_15410"
     CDS             complement(9117..9986)
                     /gene="pgeF"
                     /locus_tag="VD968_15410"
                     /inference="COORDINATES: protein motif:HMM:NF014619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HYE15831.1"
                     /translation="MPMETITSETEMLAGAGFAWREGEGGVRAVVCEPLERDGFPNAF
                     STRAGGVSPFPSESLNLAGFDQDSAENIRENRRRFFSLLGGGWSFAGCWQVHGADVRV
                     VRGSDGPAPEQERCDALATREPGVLLGVKTADCVPVLLADPRARACAAVHAGWRGTLA
                     RIVERALATMRDEFGARPQDVRAAVGPAALGCCYEVGPEVTDAFRGEFDYAESLLTPT
                     SEGRALIDLQRANREQLAGAGVLPSRVHVLPLCTICRPDLFFSYRRDKKLHGRTGRLL
                     SIIGIADSQDSSF"
     gene            9967..10350
                     /gene="acpS"
                     /locus_tag="VD968_15415"
     CDS             9967..10350
                     /gene="acpS"
                     /locus_tag="VD968_15415"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HYE15832.1"
                     /translation="MIVSIGIDIIEIGRVREVLARTPRFRQRVFTEAERGYCDSRGVA
                     SVQHYAARFAAKEAAFKALRTGWAGGVSWHEAEVTSEESGAPALVLHGRARELFDATG
                     ATHAHLTISHTTQHAVAQVVFERRS"
     gene            complement(10369..12852)
                     /locus_tag="VD968_15420"
     CDS             complement(10369..12852)
                     /locus_tag="VD968_15420"
                     /inference="COORDINATES: protein motif:HMM:TIGR02074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HYE15833.1"
                     /translation="MAEASNKRERGGVFVEPERRRRPRLLRRALGAVCALVVVITVLT
                     AGSFAYLYWHYSGIVDERLASGYLSSRAGLYAAPRTLRAGHALTPERLAESLRRAGYV
                     EGEASRVWNGRFRVEPGAVEIWPGEAGAFAAAQGFRTVRVEFDGRGRVASLRADGETV
                     DSYTLEPEPLTHEAGVKTGGRDALSYEDIPATLARAILSVEDRRFFEHGAVDLRAVAR
                     AALSWGYENQDLKQGGSTITQQLAKNTYLTSERTLRRKFQEAALAAVIERRIGKRDIF
                     ALYCNEIYLGRRGSIAVRGVRQAARVFFGKELKDLTLAESATIAGMIQSPGRYAPDRH
                     ADAARLRRATVLAAMRRDGWITEDEERSAAAEPVAVAPLERADASASHFIDYVNRAVE
                     ERAREGEAGGLRVYTTIDLDLQRAAEEAVAKQVSRLEKVFKGRRRPEAALVALDPRTG
                     RVLALVGGNSYAESQLNRATDARRQPGSVFKPVVYAAAMEAGISPLSVSLDAPRDFTY
                     DLRSRYRPANYGGAYSRRDVTLREALARSLNVVTVDVALRTGLDRVASLAERLGLPKA
                     APYPSLALGAAEATPLEVAAAYTAFARGGRVARPTPLLRVEGDGRDAAFDDAPRSEQV
                     LKPSTSYMLTDMLAGVVTRGTARAARGAAGGVALAGKTGTARDGWFAGYTPNLVCVVW
                     VGFDDGEELGLTGAESALPAWVEFVRRAVELRPELGGEHFERPQGVVTVEVDAETGAL
                     AGPACPRRESVALAPALAPRYECMLHAEPLVTLASLETVEPAAPTAAALVARRDAARY
                     EAPTEPIRAATRVEIKRDGRPVLTNDFQD"
     gene            complement(13032..13229)
                     /locus_tag="VD968_15425"
     CDS             complement(13032..13229)
                     /locus_tag="VD968_15425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15834.1"
                     /translation="MRESPVRAAGVGMVVALVVSERESTVQGGTPEVKEIFSNLMQLL
                     AIIMMMVTLAISVAAVSQMMG"
     gene            complement(13380..14252)
                     /locus_tag="VD968_15430"
     CDS             complement(13380..14252)
                     /locus_tag="VD968_15430"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HYE15835.1"
                     /translation="MWRRLTRRKTRPRLGLALSGGAARGMAHVGVLKVFAEHGIEVDC
                     VAGTSAGAVAGGAFAAGMSLPEITEVARGMRWRDMGRVTLSRLGVQTNARMEEYIRER
                     FPVTRFEELPMPFAAVATDLLTGAAVVMRDEGDLAFAIRASCAVPGWYVPVVDSEGRQ
                     LVDGGLVANLPTSVARALGAEVVIAVDVNAEGAKFLGPPTSAIGVLLQSMLVVQRTAT
                     EHQRQLADVCISPRVGHIRWDEMGRADELIAAGEDAARAAVPHIKELLEPQPSDTPAL
                     LPFRRGRARQPVKD"
     gene            complement(14318..16477)
                     /locus_tag="VD968_15435"
     CDS             complement(14318..16477)
                     /locus_tag="VD968_15435"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE15836.1"
                     /translation="MRPFKPRPGARFFCAAPFLFLLALFPPDLAGQGTTGGGGRQAQD
                     AEDVVRVSAELAQAGVTVLDREGRPVEGLRPEQFELRVDGRPAAVSFFERVSGAAAGR
                     NVIIFVDDLHLSAASVEHLRGAVPEFVEGGLRRGDQVAVVSASGQVGFLQQFTDNRSV
                     TRAAAGRLTYQPPAAGDAGSPPMTEHVALRIARGDRGALDYYTNELLRSLQFTYALPK
                     YGGKGPGFMVGSESDQAARVVMQRAEAILARASARTSASLASLEDFLRSSARLPGRKL
                     VLFVSEGFFVHGGAAERVRQLSGAAAGAGAVIYALDARSFAPQAVDSRMRLDSLGRYD
                     KFSGDEMAESRSALEALAESTGGRALFGADRLAAAGAEALGEAFNYYLLAWRPEGGRP
                     RAEKLRHVTVNIAGRPDLRARVSLGCPGADVGCLAQSATEASGREERGATPAGAERGG
                     PQSIVEAASKNFAGGALPTRLAVSYLDTPGNGAVLTASTQVTVEPLAHGADGRSPAAV
                     GLAGVVFDDTGKSVSSFKTRLSVEPTGAPGGPSSVIYNYRAALKPGLYQVRVAALDER
                     GGRAGRALEWVEIPDLSAGRLTLSSLMLGGEVVAADRPGAAPPADAPQMQFSVDRRFR
                     RGSRLSLMLFVYNAGRAAPPSALTAEIRVTRGGRPALDIPRQTVSVEGVEDPRRIPYG
                     GSFPLKSLAPGRYELAVTITDSATRQSATRQVEFDVE"
     gene            16686..18659
                     /locus_tag="VD968_15440"
     CDS             16686..18659
                     /locus_tag="VD968_15440"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15837.1"
                     /translation="MFKQGERSYVFGPFRLDTSEKMLLREGRPVPLTPKAFEILAALV
                     RRGGHLVDKDELLKAVWPDSFVEDSSLTQNIYVLRKALGDDAEEHRYIETVPRRGYRF
                     VADVEEVSAGPPPGGSEGRAGAARAGEGPAPGALDATGAVASPPRPGRQPGRSSLVAA
                     LLLLLLASAAVSYLLISRQPARGGRPPRKVESLAVLPFNSLSRRDEEEALGAGMADAI
                     IVRLGGTGRLSVPPTGAVYKYAGREQGAAAARELGVDAVLTGAVQRSEGRVRVTAQLI
                     AAGDGATLWSGVFDEQVEDIFAVQDSIAEQMLAELSPHLTGGSGEATAARRRRHSRDP
                     EAYQHYLTGLYFWNKSTKEGFYKAAEYFRRAIEEDPEYALAHGALADTYVMIAVYKYD
                     RSPPREIYGKARAAAARALELDDTVVEAHAAMSKVLAFYDKDYAGAERELKRAIELDP
                     NHASARLRYAWLLLVTGRLEEGVREMSRAQQLDPLSPITNITLGQFYVFAGRHDDALR
                     FGRRAVELDPNNSNAHLALGYAYEEQGMFAEAIAEYESASAIEEGSGVTYGLEGLCHA
                     YAASGRREEALRVLSRLEGPSMAGSVSPYNVALINSALGRKDLAFEWLERAAAVDDLH
                     PAFLRYDPQLQPLKADPRFTDILRRHKLDISPG"
     gene            complement(18738..19409)
                     /locus_tag="VD968_15445"
     CDS             complement(18738..19409)
                     /locus_tag="VD968_15445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15838.1"
                     /translation="MRRTLLLISLALLAPAARAQSQQAPRTGAEVVDKMVAVVNGREL
                     ITHTDLLWQLALQPGVPIESPREEDLRRALDLLIDQRLISQEAEKLPSVAPTSEEIAA
                     ELKRLIGLFPSQSEFYARLARVGLGEDSTQLREIVQERVRISKYLDFRFRSFTVVTPQ
                     EVAEYYRDVYVPRRRRQAPGVVVPKLEDAYNEIQSELMEAKIESGTDEFLEEARSAAE
                     ITILD"
     gene            complement(19416..21344)
                     /locus_tag="VD968_15450"
     CDS             complement(19416..21344)
                     /locus_tag="VD968_15450"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYE15839.1"
                     /translation="MIHRRGVEFAEEARRAERFSPRPLRALCASAVSPNARDKQAGTK
                     PTVAAPALSNSRLLISAALVFLVAFGVRLLMWQDARLEAGRVQTAVTENYRHMARLLA
                     ASGPAGFFSPASPAADPDTLGHPPGYPLVLALLGQTDSRARLLQIAADSLAAVLTLLL
                     ASELLSRAAGLLAGLFAALSPQFAWNSVLLLPDTLAVLPLVAAAYCLALAARRERPWL
                     LFAAGALVGLSCWLRANALLAAPFLGAAALLLFDKERRARYALLVIAGAALVVAPLTL
                     RNAVVFGAFIPVSLGAGQTALEGIADYDAEGRFGIPATDLGIMRQEAEREGRPEYLES
                     LFGPDAVRRDRARLARAWQVVSRNPFWFASVMARRALSMLRLERARTISPRPQVTSGM
                     EAGRGAERVWSVSAVELAEGAQALSPRARSAYAPGSPGEVILTGDESKDGPQLALPAA
                     EVEAGTDYLFEVPLAVERGRMTLAAADAETGAVLASTIIEAGEVNPGPQLARLPFVSA
                     GAGRVRLVFSNAPSEPPGPVVHIARAGLFKLGPASLLWARPARVFVAAAQKLFVTAVM
                     LPLALAGLAFAAAEGRRAALVVLMTFPAYYFCVQSALHTEYRYVLAIHHFLFALAAFG
                     LWRIGVAVARRIGRRGRA"
     gene            complement(21363..24725)
                     /locus_tag="VD968_15455"
     CDS             complement(21363..24725)
                     /locus_tag="VD968_15455"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HYE15840.1"
                     /translation="MSVRRVLLAILVLAAAAAGARADVRAARDLSRFEGRTIESVEVA
                     VEEASVEESALAELRSRVRIARGQRFSAVLVRESLQALFDTGRVANARVEAADAAGPA
                     GEDGRPRVAVRFIIKPQVVVAAIEFEVGVTEGTGITEDELRGRVNLLDPGKRLTEQAL
                     KESADAIQIYMRDRGFYRATVDYEQSLDATRTRSTVTFLVEPGPPTLLERLDVQIAGF
                     NPAPVIAELPLQPGRRFTQAALGETVSQLRQAIISEGRLAPRIEEPEIRLDSATNRIS
                     VRVAGTVGPRVAVRIEGYELSEKRQRELLPVRREGTIETSAIFEGARRLRNRLQEEGY
                     FFAEVTASCSVVPPLAPPPPTNLPPLPGAPEAGLGLGACEALNLDELNERNVTIAYNV
                     ERGRRFKLTDVRIEGTEKLAIADVEDDLRTREANILGILPLLGYGRGYTSEDALDRDR
                     ATIEARMRDLGHRRAAVNVRRGVSLEGENLIITFEVTEGPLTRVAGVETRGNQIYTGA
                     QLRGARCPADPLPDEACVVDGGPYSRSQARADAERMRAHYVRSGYVESEVRLSVVDLP
                     PAPGSTDERVRLVYDVTESDKFFINRIFINGLVQTDRQAVLDAIPLREQEVLRGDELA
                     ESERILLNTTDAFRQVLIRTEDAGETEGGFKRRDVIIDLEERKRITTDYIVGFSTDTG
                     PLGGFELRNTNLFGKLRQGAIRSRFSRLQQLVRFEYFDPTFRRYGEREFAPLTASIQY
                     QRDTAVTRFFRSTIDRGSDGIVQRFDPEGNLIDEFGQGVKGPSINRLTFNIETQRDLE
                     LDLSASGAVRKRSTIFLRYNYEDVRLFNIGSLLIAPVLRPDQTVRLSRFGASFARDTR
                     DRQFDPTRGEFVSVDYAIALKQLGGNISFNKLLVGYRRYKLLPAFRNTVLAASAQFGL
                     AKIFSPTDRNDNGRIDDADLRLPISERFFTGGSTTLRGFSYEEAGPRVVAPFCTFGPV
                     PGGAAPDSPFGPLPPCGTFRNEKGEPVTLNPFTVPIGGNAMAILNLEARVPITRDIQA
                     VPFYDGGNVFERVGDLFGRASDPGRDPNLRQKWTHTVGLGLRLKTPIGSLGVDYGYLL
                     NPPEFLIPQFGGGTAVHRLRNAQIHFRFGQTF"
     gene            complement(24771..>25626)
                     /locus_tag="VD968_15460"
     CDS             complement(24771..>25626)
                     /locus_tag="VD968_15460"
                     /inference="COORDINATES: protein motif:HMM:NF016260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HYE15841.1"
                     /translation="LDLADLIDQRREAPITEGGGGGGGGLLAGSVTTLDLIIQGRDAL
                     VVRNNLADMVGSISLRARGTVDDPLISGRITVTRGTLAFRNEQFELQRGIIDLPPRRD
                     ADPVLNIQAEADIRGYRVRAGITGPLSQPVTSLSSDPALPQTDVVSLITTGDLSGGSE
                     GVSTLAQTGLGTATSLLTESLISAPVRKATDKLFGLNRFEFDPVIAGRGGASPTARLT
                     VGRQVNRNLAVTFSTNVTGEPNQVVAVEYRVSDRLSFVAQYQQGSTDTLRARSNNFNF
                     ELRFRKRY"
BASE COUNT         3944 a         8920 c         8955 g         3807 t
ORIGIN      
        1 atcggctcgc tcgacgacct tacggccgcc tcgatggagg acgtgaaggg cttcttccgc
       61 cgctactacg tcccgaacaa cgcgagcctc gtcatcgccg gcgacttcga cccctcggag
      121 gcgcgccgcc tcgtagagaa gtacttcggc cccatccaga agggcgaccc cgttaagccc
      181 gtcacggccc cgcgcccgaa gctcgaccgc gaagtcaggg tcaacatgga ggaccgcgtt
      241 cagctcccgc gcgtgcagtt cgtgtggact gccgtcccgg ccttcgaccg tgacgaggcg
      301 gcgctcgaca cgctcgcgga gatcctcggc ggcggcaagt cttcgcgcct atacaagtcg
      361 ctcgtctatg agaagcagat agcgcagcag gtatcggcct tcaacccggc cggcgagata
      421 gccggcacct tccagataac cgtcacgggc aagcccgaca ttacgcccgc ccagctcgaa
      481 gaggccgtca aggccgagct ggcgcgcctt aagaccgagc cgccctcggc gcgcgaggtc
      541 gagcgcgcct acaactcgcg cgaggcttcc ttcatctacg gcctccagac ggtcggcggc
      601 ttcggcggca aggacgacca gctcaacgcc tacgcgacct acctcaagaa gcccggctac
      661 ttcgagcaag acctcgcgcg ctaccgcgcc gtgcgtgtag ccgacgtgcg ccgcgtggcc
      721 gaccagtacc tgaccgacaa gcgaatcgtg ctgacggtgg tcccgcgcgc cgccggctcg
      781 ggtggcggcg gcggccccgc ggccgctgcc ccgcgcgagg ccatagcgcc gcccgccgca
      841 cagaccgcgg gccagcagca ggccggcgcc gccaacgccg cgtcgcagac gccccgcact
      901 ggcaccgccc agggcgcgca aggggcgcag ggctctacgc ccgccggcac gcagcccgta
      961 acgaagaccg aggccgccgc gacgcagccc gcaggggccg cgccgcctac ctcctccgcg
     1021 cctgctaccg ccccgcgcac cggcgcacag gcaagacagg gctccgcggc taagccgaag
     1081 aagccggagc agatcgttga cacgtcgaag ctgccgaagc cggggccgaa cccgaagttc
     1141 acgctcccgc ccgtgcagcg ccgcacgctc tctaacgggc tggaagtcct cgtggtcgag
     1201 caccacgagc tgccgattgt gaaccttaac ctcgtcgtca agatgggcgc ggccggagac
     1261 cccgcggatc aggcgggcct cgcctcgctc gtcgccgaca tgctcgacga ggggactaag
     1321 acgcgctcgg ctctcgacat ctcagaccag ctcgccttca tcggcgcctc gatgggcgtg
     1381 ggcgccggct gggactcctc gacggcgagc ttgacgacgc tgacgcgcca cctcgaccgc
     1441 gcgctcgaca tctacgcgga cgtgattctg aacccggcct tccccgacaa ggagcttgcg
     1501 cgcctgcgcg cgacgcgcat gacctccttc cggcagcggc gcgacgaccc gaaccagata
     1561 gccggcatcg tctatacgtc gctgctctac ggcaagggcc acccctacgg ccacccgctc
     1621 acgggcgacg aggcgtcgct tcaggccatc acgggcgagt cggtgcgtaa gttctacgag
     1681 accttctacc ggcccaacaa ctccgccctc gtcgtcgtcg gcgacgtgaa gcccgacgac
     1741 atcacggccc ggcttgagcg cgctttcggc aagtgggaga aggcgcacgt ccccgccgtg
     1801 gacgtttcgg ccgccccgca gccgcgcgac cgcacgcaga tcttcgtcgt tgaccgcccc
     1861 ggctccgcgc agtcggtcat acagataggc cacgtcggcg tgccgcgctc gaaccccgac
     1921 tacttcccgc tgctcgtcct gaacaccatg ctcggcgggc agttcacctc gcgcatcaac
     1981 ctgaaccttc gcgaggagaa gggctacacc tacggcgcgc gctcttcgtt cgacttccgc
     2041 cgcggcgccg gcccgttcac ggcctccgcg cccgtgcaga cggccgtgac gaaggagtcg
     2101 gtgatggagc tgatgaagga gctgcgcggc atacgcggcg agatacccgt cacgccggcc
     2161 gagcttgagt acgcgaagca ggcgatcata cgcggcttcc cgcgaagctt cgagacgccg
     2221 gggcagatag gcgaccgcct tgagacgctc gtcacttacg acctgccctc cacctacttc
     2281 aacacctaca tcgagcgcgt gcaggccgtc acgctcgaag acatcaaccg cgtcgccggc
     2341 cgctacctgc aacccgaacg gatggccgtc gtcatcgtag gcgaccggaa ggtcatcgag
     2401 cagggcctcc gctcgctcga cgacctcgga ggccacataa ccttcgttga cacagagggc
     2461 cgcccggccg cgcagggcgg ctcaagcggc ggcgacagca ggtagcaggg cgaaggccga
     2521 aaagcaaagg aagaggctgg cggggccgcg cgctccgcca gcctcttccc ttttactctt
     2581 ggctcaccta gcggcgcgcc tgattgtgaa gacgacgacg aacacctcgt cggggcggcg
     2641 cgtcgtgagc gtgccgacga cagtaggctc gccctcgcgc gcgctgaagt cggtcgtcat
     2701 gccgacgttc tcgtactgta tgacggggta gccgggcgcg tcgccggccg ccggggcgac
     2761 ggcagccgtc tgcacgggga cgcgcagggt gaagcggaag cgcggcacct gcacgaacgt
     2821 ctgccccgaa gcgccttcgg cgagcctcac gccgccgacc gagaactggt agaaggttgg
     2881 tgcggtcaac tgctgcgcct gcgactgcgt gaggagtgag gggccgacgc tcgacacctc
     2941 gagcgtgttg ccgccgtctt tgaccctgtg caggaaggtc gtaacgagcc tgtgctgcga
     3001 gtacgggagc gacgccttca gttgccgcac cacgccttcc agctcgcgcg gcacctcgcc
     3061 cctctgcccc tccgcgttcg aggccagcag catatgtagg tggagttcaa ggttcgtgtc
     3121 gtcgcgttta gcctgtgcgc cgcgcgacgg ctgagggggc gagccctcgt cctgagcgcg
     3181 ggccggcggc gcgagcgcgg cgaagagcag gagcgcggct gcgggcagga cggcggctct
     3241 gagttttcgt gacggcatga tctctccttc ggtgttcggg cgttgaaaaa gggagagcgg
     3301 ggggagagcc ccgccgcgcg ccgcttccgg cgcccggcag atgctaacac gcccgtcgcg
     3361 tcggtaagtt ccgtgaccgc gtcgggggta cggctttcgt cttcagtctt cggccaaact
     3421 cttcgccagc cgcgcgcgcg tgtatgccac gcggaagccc tgccgttcga ggttgcggtg
     3481 cgaagtcgag ccgggcagcg cgctaacggc ggcgaggtcg cagcccgcac gggccgcgtg
     3541 cgcgagacgg gcgcgtatga gcgccgcctg cacgccgcgc cctcgcatgt gcggcagcac
     3601 gcccgtcccc gagagcgccg ccgcttcccc gtctaagcgc aggaagccgc cgccagcgac
     3661 gcgcccctcg acttctgcga tgaagcagac gccgccgcgc acggcgagcg tggcgcggaa
     3721 gatttcgagg aacgcgggcg tcacctcccg gccgctcagg gcgaagctct ccgccacggt
     3781 gcgcgcccag agcccgcctt cgtgctcgcc cgcgacgcga acgctcacgc cgtcgggctc
     3841 tgccgccagc ggcgggcgcg tgccgagcgg cagaaacagc ttgtcggtca gctccgtcag
     3901 cctgtagccg cgcgagacga gcaggcccaa cagcgtgaag tccgcgagcg ggcagaattc
     3961 gacgctcgcc gtctcggcgc cgcgcgcgcg gaaaaactct tccatccttt cggcctcggc
     4021 gcggaagaac tcctcgggct cttccggctc ggccgcgggg ccgagcccga gccccacggc
     4081 gtgcgtgagc ggcgagctta cgcccgcgag gaccgcgcgc ccgcccgcga cagcgagcac
     4141 cgacgcgccc gcctccggaa agagccgcgc gtgcgccgcc gcgtactcct cgcccgcacg
     4201 cgcgtccgcc ccttcgagcc tgcgcgcgag cgcgatgtca atgagtggct ccatcagtct
     4261 tttacggggc gggcttcggg aggcacggtg tcaggaatct tcggcgggcg ccgagatgcc
     4321 cgccgtattc ataaggacga cgcgccagcc gtccgggtct tcgtaggtga ggccgcgccc
     4381 ggcccagtaa gggttctcgg gctcgacggg cgcgtggccg cgctctccga ggcggcgccg
     4441 cgctctctcg aaggccgcgg cgtctggaat gtagagcacg agcaggttgt cgcgcgaagg
     4501 cgcggggcag tcgctcccgt cttggtggct ggtgaactcc agatgatagg cggcgccggg
     4561 aagccccagc atgacgccgt cgtagccggc gtggccgcgg aactcgccta cctgccgaag
     4621 gccgagcgcg tcgcggtaaa agcgcacgac ctcggcgagc ctcgccgtcg gccgcgccac
     4681 cctcacctgc gcgaccggaa agtcatcggg ccactcgtcg ctcttacctt tcaccgtcgc
     4741 ttgtccgtct tgttgaaggc acgtgtgacg cgcttgacgc gcgccctctc ctcctgcgac
     4801 ttgcgctgat cctgcttgat ggcgacctgg cgcatctcgg cctgcatctt gcggtagctg
     4861 gcgaagcgtt ctgggtctag ctcgcccgcc tctagcgcct cgcgcacggc gcagcccggc
     4921 tcgccctcgt ggcggcagtc ggtgaagcgg cagcgcgagg ccgcctcccc cacgtcctcg
     4981 aaggtctcgc gaaggccgcg ctcgctcacg agcagttgga gctcgcgcat gcccggcgtg
     5041 tccaggagca ggccgccgcg cgggagcagg aacagctcgc ggtgcgtcgt cgtgtgcttg
     5101 ccgcgggcgt cgtgcaggcg cacctcctgc gtgcgctgca cctccgagcc cagcaggcgg
     5161 ttgactatcg ttgacttgcc cacgcccgaa gagcccatga gcgcgacggt gcgcccgcgc
     5221 cagacgtagg gctccaactg ctcgactccc cggccgagct tcgcgctcag gaggtggacg
     5281 gggacgccgg gcgcgacgcg ctctatctcg cgcagcttct cgtcggcgtc ttgggctaag
     5341 tcggccttgt ttaagacgac gacgggctcc gcgccgctct cccaggccat tatgaggtag
     5401 cgctcgacgc ggcgcgggtt gaagtcgttg tcgaggcccg tgacgaggaa gaccgtgtca
     5461 acgttggcgg cgactatctg ctcctcggtc tcgcggcccg cggccttgcg cgagaacttg
     5521 ctgcgccgcg gcagcacctc gtgaatcttc gccttgccct cgtccgcggt gcggcgcagc
     5581 gcgacccagt cgcccacggc cggcaggtct gcggcctcgc gcgccaggta gcggaggcgc
     5641 ccggtcggct cggcccagac ctcgcccgac tcggcgtaga gcatatagac cttgttgtgc
     5701 tggaggaaga cgcgcgccgg ctcgaagcct tcgcccgcta gcggggcgaa ctcggcggcg
     5761 aaccgctcgt cccagccgta gtcttcgagt gtgagcgact gtcccgccgt cattacttca
     5821 tcaggaggtt tatggtgccg cggcagcgcg ccgcgccgca gcggcagcgc ttcgtgtccg
     5881 ggtggtagga ctctatgtag tcgagcgtaa tctcctcgcc cggctctatg tcgcgcagcg
     5941 cgaagaagat tatgtggccg cgtatgatgc gtatgaacga gttgggctcg cacgagtggt
     6001 tgatgaactg cgagccgttg ccgccgcggc tgccgtcaat gccccagtac gagtcaatgg
     6061 cgcagatgtg cagccgctgc ttgccgcgca tgcgccgcgc cgcctcgacg cgagagacgc
     6121 gctcgccgac taactcgact atcttccgcc ccttcttaaa gggcgcggtc gcgaaacagc
     6181 ccctgccgtc aatgcccgac gggcgaacct ctatgccggg cgcgctccca ccgtttgctt
     6241 tcgacatatt tgacagccgc gccggccttc agtcgccgcc cgcgcgcttc accgctccct
     6301 gctccttcgg cccctcgtaa cggtagtggc ccgttatctt ccaggagaac agcacgtcct
     6361 ccatcttcgg cccggcgcct atgttgtgga ctatcagaag gcggcgcggg tctgtgcccg
     6421 aaggcacgtt gacgacgatg ccgatgtgcg tcaggcccgc gcccaagtcc cacgtcacta
     6481 cgtcgcccgg cttgtagtcg gcggcctcct ccgtgacggc gagcgaggcg ccctgacgct
     6541 cgaagaagac catcaggttc ggcacgcgcc ggtggtctat gttcgtgtcc ggcttcttca
     6601 ggccccactt gcgcgggtag gcgccgaagt tcgccttcat gtcctcgtgg acttccttct
     6661 gcaaatcaac gccgaccctg cggtaagagc gtatgacctc gtccgtgcag acgcccacct
     6721 cggcaggcac gtctccgccg gggtagtcaa tcttgaagta ggtggggtcg tagcgaacct
     6781 gctgggtggt gcgctcaatc gcagcctcca cgagccggtc gaggaaggcc gagccgctcg
     6841 acggccgcgg cgccggggcc gcctgctcct gcctgacggg cgcgggcgcc gccgtctgcg
     6901 agacagtcgc gcgcagcccg cagcccgccg ataaaacgag tgccgatgcc gtgcagcacc
     6961 gccagacttt agactgccgg attgtagtca ccctcttcct catcctccgc gcacgccgga
     7021 ttatacagca tccaccgccg cgcgcccgtt agtgccgccg ccgcgtgccc ctgttataat
     7081 taacgcgcca tcccgcccgc aaactaaggc agaaaggtct gagtaagatg accgaggacg
     7141 agagacggca gaggatggac ttcatcatcg agcagcaggc gcaattagct gccaaccaac
     7201 gaaggcagag gagcgtctta cgcacgacgc ggacaagcgg gcgaaggcgg cagaaggcat
     7261 aacagccctg ctcgccgtcg ccgaaattca cgagcgggag atcatggaga tcggcgggca
     7321 gatcgtgagc gagaggcgcg gcggcgccgg ctagaagggt tttacggcac gggcgatggg
     7381 ggaactgact cacttaacgg ggctgacgcg cgaagagttg gggcgctacg tcgagggact
     7441 gggcgagccg gcgtaccgcg gccggcaggt atttgccgcg ctgcacaggc ggcgcctccg
     7501 ctcgttcgag gagatgaccg acctgcccaa aagcttccgc gcgcggctgg cggagtcggc
     7561 cacggcctcg acccttaaag tcgagtcgcg ctacgtcgcg tccgacggga cgcgccggta
     7621 tttgatgaag acctcggacg gccttcccgt cgagaccgtc ttcatcccgg aggagcggcg
     7681 cgacaccatc tgcttctcgt ctcagtcggg atgccccttg cagtgcgact tctgcctgac
     7741 cgcgaagctc ggcctcctgc gcacgctcgc ggccggcgag atggtcgagc agataatcgt
     7801 agccttgaac gacgcatacg gcgtgggcgc caagacgccg cgcggcacga acctcgtcgc
     7861 gatgggggcg ggcgagccgt tcctcgcctt cgagccgctg atgaaggcgc tgcgcgtcat
     7921 ggccgacccg gacggcctct tcatagtgcc gaaccgcgtg acggtctcga ccgcgggcgt
     7981 cgtccccaag ataagagagc tcgcgagagt ccccgaccgc ccgcacctcg ccatctcgct
     8041 ggccgcgccg acggacgaac tgcgcgaccg cctgatgccc atcaacaagc gctggccgct
     8101 cgaagagttg ctcgccgcct gcaaggagtt cgagcagtcc ttgcggccgg gcgagcgctt
     8161 caccttcgag tacgtgatgc tcgacggcgt caacgactcg gacgcgcacg cccgacagct
     8221 cgcgaacctc ctcaaccgcc accagctccg cgcgaaggtg aacctgatac cgcacaaccc
     8281 ggccgagggg ctgccctacc gcccttcgcc cgaggagcgc gtgcaggctt tcaaggccat
     8341 cctcgaatcc aagggcgtcc gcgccttcgt gcgacggcct cggggccgag acatctacgc
     8401 agcctgcggc cagctcgcgg cgcgcacttc ggtgccggcc gcggcagacc ggccagtgca
     8461 gattcagacg taataaaaaa ggaacccgac ttcaagagat gagacgtaag aattacgccc
     8521 gactgatgac tctcgttgtg ctcgtggccg cgctgctcgc gccgcccgcc ttcactcgca
     8581 cgtccgccgc gccgcttcag gccggcaaca tcggcatcaa cggcttcttt tcggttgacc
     8641 cggcgcagca gggcagcacg ttccaggcgg ccgtcgtgct cgacatcccg cgcgggctgc
     8701 acgtcaacgc gaacaagccg ctcggcaagt acgccgtgcc gacgaccgtg aagatagacg
     8761 cgccgcgcgg ctttaagatc acgcccgtca cgtacccgcg cggctcggtg cgcacgttcc
     8821 gcttcggcgg ggccgaggcc gagcgcctgg ccgtgtatga ggggctcgcc gtcgtgcgct
     8881 tcaacgtgag cgtgcctgcg aaccacgaga ttggcgtggc gcgcgtgcgc gcgaccgtgc
     8941 gctaccagag ctgcacggac gaggtctgct tcccccccgc gacgcgcgag atagtgctcc
     9001 ccatcgcgat cgtcccggcg gggacgcccg tcaaccgcat caaccaccgc tacttcggcg
     9061 gcggcggccg caggagaagg tgagacaatt gcgggttgtg gatttcggat tgcagattag
     9121 aaggaactat cttgtgaatc cgcgatccct atgatggaga gtagccgccc cgtcctgccg
     9181 tgtagttttt tgtcgcggcg gtaggagaag aataggtcgg gccggcagat ggtgcagagc
     9241 ggcagcacgt gcacgcgcga cggcaggacg cccgcgcccg ctagctgttc gcggttcgct
     9301 ctttgaaggt caatcagcgc gcggccctcg ctagtgggcg ttagcaacga ttcggcgtag
     9361 tcgaactcgc cgcggaacgc atccgtcact tcggggccga cctcgtagca acagccgagc
     9421 gcggcggggc ctacggcggc gcgcacgtcc tgtggcctgg ccccgaactc atcgcgcatc
     9481 gtcgcgagcg cgcgctcaac gatgcgcgcg agcgtgccgc gccacccggc gtgcacggcg
     9541 gcgcaggcgc gcgcgcgtgg gtctgcgagg aggacgggga cgcagtcggc ggtcttgacg
     9601 ccgagcagca cgccgggctc gcgcgtggcg agcgcgtcgc agcgctcctg ctcgggcgcg
     9661 gggccgtccg agccccgcac gacgcgcacg tctgcgccgt gaacctgcca gcagccggcg
     9721 aacgaccagc cgccgccgag caggctgaag aagcggcggc ggttctcgcg tatgttctcg
     9781 gccgagtctt ggtcgaagcc cgcgaggtta agcgactcgg aggggaaggg gctcacgccg
     9841 cccgcgcggg tcgagaaggc gttcgggaag ccgtcgcgct caagcggctc gcacacgacg
     9901 gcgcgcacgc cgccctcgcc ttcgcgccac gcgaagccgg ccccggccaa catttcggtc
     9961 tcggaagtga tcgtctccat cggcatagac attatcgaaa tcgggcgcgt gcgtgaagtg
    10021 ctggcgcgca cgccgcgctt ccgccagcgc gtcttcaccg aagccgagcg cggctactgc
    10081 gactcgcgcg gcgtcgcctc cgttcagcac tacgccgcgc gcttcgccgc gaaggaggcg
    10141 gccttcaagg cgctgcggac gggctgggcc ggcggcgtct cgtggcacga ggccgaagtc
    10201 acttccgaag agtcgggcgc gcccgccctc gtcctgcacg gccgcgcgcg agagctgttc
    10261 gacgcgacgg gcgccaccca cgcgcacctc accatctcac acaccactca gcacgccgtc
    10321 gcgcaggtcg tcttcgagag gcgctcttaa cgaaaacggc gccgcaatct aatcctgaaa
    10381 atcgttcgtg aggacggggc ggccgtcgcg ctttatctcg acgcgcgtcg cggcccggat
    10441 gggctcagtg ggggcttcgt agcgcgcggc gtctcggcgg gcgactaagg ccgccgcggt
    10501 cggcgctgcg ggctcgaccg tttcgagcga ggcgagcgtg acgagcggct cggcgtgcag
    10561 catgcattcg tagcgcgggg ctagggcggg cgcaagggcc acgctctcgc gccgcgggca
    10621 cgccgggccc gcgagcgcgc ccgtctcggc gtcaacctcg acggtaacga cgccctgcgg
    10681 cctctcgaag tgctcgccgc cgagctcggg cctcagctcg accgcgcgac gcacgaactc
    10741 gacccatgcg gggagcgcgg actcggcgcc cgtcagcccc aactcctcgc cgtcgtcaaa
    10801 cccgacccat acgacgcaca ccaggttcgg cgtgtagccg gcgaaccaac cgtcgcgcgc
    10861 cgtgccggtc ttccccgcaa gcgccacgcc cccggccgcc ccgcgcgcgg cgcgcgcagt
    10921 cccgcgagtg acgacgcccg ccagcatgtc cgtgagcatg tagctcgtcg aaggcttcaa
    10981 gacctgttcg gatcgcggcg cgtcgtcgaa ggcggcgtcg cggccgtcgc cctctacgcg
    11041 caggagcggc gtgggccggg cgacgcggcc gccgcgcgcg aaggccgtgt acgcggcggc
    11101 gacttcgagc ggggtcgcct ccgccgcgcc gagcgcgagc gaggggtacg gggcggcctt
    11161 cgggagcccg agccgttcgg cgagcgaggc gacgcggtcg agcccggttc tcaaagccac
    11221 gtccacggtc acgacgttga gcgagcgcgc gagcgcctct ctgagcgtca cgtcgcggcg
    11281 cgagtatgcg ccgccgtagt tcgccgggcg gtagcgcgag cgcaggtcgt aggtgaaatc
    11341 gcgcggcgcg tcgagcgaga cggagagcgg cgagatgccg gcctccatcg ccgcggcata
    11401 gacgacgggc ttgaagacgg agccgggctg gcgccgggcg tcggtcgcgc ggttgagctg
    11461 cgactcggcg taggagttgc cgcccaccaa cgcgagcacg cggcccgtcc gcgggtcgag
    11521 cgcgacgagc gcggcctcgg ggcgcctgcg ccccttgaaa actttttcta gccgcgagac
    11581 ttgtttcgcc accgcctcct ccgcggcgcg ctgcaagtcc aaatcaatcg tcgtatagac
    11641 gcgcagcccc cccgcctcgc cctcgcgcgc gcgctcctcg acggcgcggt tcacgtagtc
    11701 tatgaagtgg gaggccgagg cgtcggcgcg ctccaagggg gcgacggcga cgggctcggc
    11761 cgcggccgag cgctcctcgt cttccgttat ccagccgtcg cggcgcatgg cggcgagcac
    11821 ggtcgcgcgc cgcagcctcg cggcgtcggc gtgtcggtcg ggcgcgtagc ggccggggct
    11881 ctgtatcatc ccggctatgg tcgcggactc ggcgagcgtg aggtctttca gctccttgcc
    11941 gaagaagacg cgcgccgcct gccgcacgcc gcggactgct atcgagccgc gccgacccag
    12001 gtatatctcg ttgcagtaga gcgcgaatat gtcccgcttg ccgatgcggc gctcgatgac
    12061 ggcggcgagc gccgcctcct ggaacttgcg ccggagcgtg cgctcgcttg tgaggtacgt
    12121 gttcttcgct agctgctgcg tgatggtaga gccgccctgc ttcaagtcct ggttctcgta
    12181 gccccagctc agcgccgcgc gcgcgacggc gcgcaggtca accgcgccgt gctcgaagaa
    12241 gcgacggtct tcgacggaga ggatggcgcg cgcaagcgtc gcgggtatgt cttcgtagga
    12301 gagagcgtcg cgcccgccgg tcttgacgcc ggcctcgtgc gtgagcggct cgggctcaag
    12361 ggtgtaggag tcaaccgtct cgccgtcggc gcgcaacgag gcgacgcggc cgcggccgtc
    12421 gaactcgacg cgcaccgtgc ggaagccctg cgccgctgcg aacgcgccgg cctcgcccgg
    12481 ccaaatctcg acggcgccgg gctcgaccct gaagcggccg ttccacactc ggctcgcctc
    12541 gccctcgacg tagcctgcgc gccgaagcga ctcggcgagt cgttcgggcg tgagcgcgtg
    12601 gccggcgcgc agcgtgcgcg gcgccgcgta gagcccggct cggctcgaaa ggtagccgga
    12661 ggccaggcgc tcgtccacta tgcccgagta gtgccagtaa agataagcga aagagccagc
    12721 cgtgaggacg gtgattacga cgacgagggc gcagacggcg ccgagagcgc gcctgaggag
    12781 ccgcgggcgg cgccgccgct cgggctcgac gaagacgccg ccgcgctctc gtttgttgct
    12841 cgcttccgcc atcgtttcgc cgcgccggcc ggccacactt ctgcccgcga aggcgcacgc
    12901 gtgcgccccc cgagacgggc cggccgggtc tcacttccgt atgtcacaag taaacgacta
    12961 atcggcgcgc gtttcttata cgccgcgatg ccctcgggaa agggagagga gggctgctaa
    13021 gagtttccgc gtcagcccat catctgcgag acggccgcga ccgagatagc cagcgtcacc
    13081 atcatcatga tgatcgccag cagttgcata aggttgctga atatctcctt cacctccggc
    13141 gtcccccctt gcaccgtaga ttcccgctca gagacgacca aagcaacgac catgccgacc
    13201 ccggccgcgc gcacgggcga ttccctcacc ccgtcgaaac tgcgagcaaa cgaaccgtta
    13261 cggcccctga ggccgcgcgc gccagggcga ggagcggggc agagcgagca cggctcgctt
    13321 gcttttcgta caaacgaagc ggcgtaagcg cgccgccgcg cgttcggaaa taagccggct
    13381 cagtctttga ctggctgcct cgcgcggcca cgccggaaag gcaggagggc gggagtgtcg
    13441 gagggttgcg gctccagaag ctctttgatg tgagggacgg cggcgcgcgc ggcatcttcg
    13501 ccggccgcta tcagttcgtc ggcgcggccc atctcgtccc agcgtatgtg gccgacgcgc
    13561 gggcttatgc aaacgtccgc gagctggcgc tggtgctctg tggccgtgcg ctgcacgacg
    13621 agcatggatt gcagcaggac tcctatcgcc gaggtcggcg ggccgaggaa cttcgcgccc
    13681 tcggcgttca catccacggc gatcacgact tcggcgccga gcgctcgcgc gaccgaagtg
    13741 gggaggttgg cgacgaggcc gccgtcaacg agctgacgcc cttccgagtc aacgacgggg
    13801 acgtaccagc ccggcaccgc gcagctcgcg cgtatggcga atgccaggtc gccctcgtcg
    13861 cgcatgacga ccgccgcgcc cgtcagcagg tcggtcgcga cggccgcgaa gggcatcggc
    13921 agctcctcga accgcgtgac ggggaagcgc tctcgtatgt actcctccat gcgcgcgttc
    13981 gtctggacgc cgaggcgcga gagcgtcacg cgccccatgt cgcgccagcg catgccgcgc
    14041 gctacctcgg ttatctccgg gaggctcatc ccggccgcga aggcgccgcc cgccaccgcg
    14101 cccgcgctcg tcccggccac gcagtcgact tcgatgccgt gctcggcgaa gaccttcagg
    14161 acgccgacgt gcgccatgcc gcgcgccgcc ccgcccgaga gggcgagccc gagccgcggc
    14221 cgcgtcttcc gccttgttag cctacgccac atggcgcctt cagtctgcca caacggcgcg
    14281 cggatttgta cagagaagtt gggggagcgc cgggagccta ctcgacgtcg aactcgacct
    14341 gccgcgtcgc gctctggcgc gtggcgctgt cggtgatggt cacggccagc tcgtagcggc
    14401 ccggcgccag cgacttgagc gggaacgacc cgccgtaggg gatacgtcgc gggtcttcga
    14461 cgccctccac ggagaccgtc tgccgcggta tgtcgagcgc gggccgcccg ccgcgcgtga
    14521 cgcgtatctc cgcggtgagg gcggagggcg gcgctgcgcg gcccgcgtta tagacgaaca
    14581 acattaagct caggcgggac ccgcggcgga agcgccggtc aacgctgaac tgcatctgcg
    14641 gcgcgtcggc cggcggcgcg gcgccggggc ggtcggccgc cacgacctcg ccgcccagca
    14701 tgaggctgct cagcgtcagg cggccggccg aaaggtccgg tatctcgacc cattcgagcg
    14761 cgcggccggc gcggccgccc ctctcgtcga gcgccgcgac gcgaacctga tacagcccgg
    14821 gcttaagcgc cgcgcggtag ttgtagatta cgctcgacgg cccgcccggc gcgcccgtcg
    14881 gctcgacgct gagccgggtc ttgaagctgg agacggactt gcccgtgtcg tcgaagacga
    14941 cgcccgcgag gcccacggcc gcgggcgagc ggccgtccgc gccgtgggct agtggctcga
    15001 ccgtcacctg cgtcgaggcc gtcagcaccg cgccgttgcc gggggtgtcg aggtagctga
    15061 cggcgagccg cgtgggcagc gccccccccg cgaaattctt cgaagcggct tcgacgattg
    15121 attgcgggcc gcctctttcc gcccccgcgg gcgtggcgcc gcgctcttcc ctccccgagg
    15181 cttccgttgc gctttgtgcc aaacagccta cgtccgcgcc ggggcagccg agcgagacgc
    15241 gcgccctgag gtcggggcgg cccgcaatgt tgacggttac gtgcctgagc ttttccgccc
    15301 gcggcctgcc gccttccggc cgccacgcga gcaggtagta gttgaaagct tccccgagcg
    15361 cctcggcgcc ggccgcggcc agccggtctg cgccgaagag ggcgcgcccc cccgtgctct
    15421 ccgcgagggc ttcgagcgcc gagcgcgact cggccatctc gtcgccgctg aacttgtcgt
    15481 agcggcccag cgaatcgagg cgcatccggc tgtcgacggc ttgcggcgcg aacgagcgcg
    15541 cgtcgagcgc gtagatgacg gcgccggcgc ccgccgccgc ccccgacaac tgccgcaccc
    15601 tttcggcagc gccgccgtgc acgaagaagc cttcggagac gaagaggacc agcttccggc
    15661 ccggcagccg ggccgacgag cgcaggaaat cttcgagcga cgcgagcgag gccgaggtgc
    15721 gcgccgaggc gcgcgccagt atggcctcgg cgcgctgcat gaccacgcgg gcggcctggt
    15781 cgctctcgga gccgaccatg aagccggggc ctttgccgcc gtacttgggc agcgcgtagg
    15841 tgaactgcaa agacctcagc agctcgttcg tgtagtagtc gagcgcgccc ctgtcgccac
    15901 gcgctatgcg gagcgcgacg tgctccgtca tgggcgggct cccggcgtcg cccgcggccg
    15961 ggggctggta agtcagccgc ccggccgccg cccgcgtgac agacctgttg tctgtgaact
    16021 gctgaaggaa gcccacctgc cccgacgcgg agacgacggc cacctgatcg ccgcgccgca
    16081 ggccgccttc gacgaactcg gggacggccc cgcgcaggtg ctcgacgctc gcggccgaga
    16141 ggtgcaggtc gtcgacgaaa attatgacgt tgcggcccgc ggcggcgccc gacacccgct
    16201 cgaagaagga gacggcggcg ggacggccgt cgacgcgaag ctcgaactgc tcgggccgca
    16261 ggccctcgac cggcctgccc tcgcggtcga gcacggtcac gcccgcctgc gccagctcgg
    16321 cgctgacgcg caccacgtcc tccgcatcct gcgcctgccg gccgccgccg ccggtggtac
    16381 cctggcccgc caggtcgggc gggaagagcg cgaggaggaa gaggaagggt gcggcgcaga
    16441 agaagcgagc gccggggcgg ggcttgaatg gtcgcatggc gttggcctcc tgaagggttt
    16501 cgtgctctaa cctctggccg cccgtgttgc gggccgcgcg gggcggaact aaaataccga
    16561 ccgcgccggg gccgctttga aggcgggggc gctgtttccc gttctgatgc gagccggtgg
    16621 attggcgacg agaacggtcg gctaatttat cgctcataaa accctcaaag agttctcaaa
    16681 gcacgatgtt caagcaaggc gagcgctctt acgtcttcgg cccgttccgc ctcgacacgt
    16741 cggagaagat gctcctgcgc gaggggaggc cggtcccgct aacgccgaag gccttcgaga
    16801 tactcgccgc gctcgtccgg cgcggcggcc acctggtaga caaggacgag ctgctcaagg
    16861 cggtctggcc cgacagcttc gtggaggaca gcagcctcac gcagaacatc tacgtgctgc
    16921 gcaaggccct gggtgacgac gcggaagagc accgctacat cgagacggtg ccgcgccgcg
    16981 gctaccgctt cgtggccgac gtggaagaag tctcggccgg gccgccgcca ggcgggagcg
    17041 aggggcgcgc cggggccgcg cgcgccggag agggtcccgc gcccggagca ctcgacgcga
    17101 cgggcgccgt agcgtcgccg ccgcggccgg gccgtcagcc tgggcgctcg tcgctcgtcg
    17161 cggcgctcct gcttctgctg ctggcttcgg cggcagtctc ttacctgctc atctcgagac
    17221 agcccgcccg cggggggcgc ccgccccgga aggtcgagtc gctcgccgtt ctgcccttca
    17281 actccctcag ccggcgggac gaggaggagg cgctcggcgc cggcatggcc gacgcaatca
    17341 tagtcaggct cggcggcacg gggcgcctct cagtgccgcc gaccggcgcc gtctataagt
    17401 acgcgggccg cgagcagggc gccgcggccg cgcgcgagct gggcgtcgac gccgtgctca
    17461 ccggcgccgt ccagcgctcc gagggccgcg tgcgcgtcac cgcgcagctc atagccgcgg
    17521 gcgacggcgc cacgctctgg tcgggcgtct tcgacgagca ggtcgaagac atattcgccg
    17581 tgcaggactc gatagccgag cagatgctcg cagagctctc gccccacctg acgggcggca
    17641 gcggcgaggc gacggccgcg aggcgccgcc gtcactcgcg cgaccccgaa gcctaccagc
    17701 actacctgac cgggctttac ttctggaaca agagcacgaa ggagggtttc tataaggcgg
    17761 cggagtactt ccggagggcc atagaggagg accccgagta cgcgctcgcg cacggcgcgc
    17821 tggccgacac ctacgtcatg atagccgtct ataagtacga ccgctcgccg ccgcgcgaga
    17881 tttacggcaa ggcgagggcg gcggccgcgc gcgcgctcga gctggacgac acggtcgtcg
    17941 aggcgcacgc cgcgatgtcg aaggtcctgg ccttctacga caaggactac gcaggggccg
    18001 agagggagtt gaagcgggcc atagagctcg acccgaacca cgcctcggcg cgcctgcgct
    18061 acgcgtggct gctgctggtg acgggcaggc tcgaggaggg cgtgcgcgag atgagccgcg
    18121 cgcagcagct cgacccgctc tcgcccatca cgaacataac gctcggccag ttctacgtct
    18181 tcgccggccg ccacgacgac gcactgcgct tcggccgccg cgccgtcgag ctcgacccga
    18241 acaactcgaa cgcgcacctc gcgctcggct acgcctacga ggagcagggc atgttcgccg
    18301 aggccatagc cgagtacgag tcggcgagcg ccatcgagga gggcagcggc gtgacctacg
    18361 ggctcgaggg gctgtgccac gcctacgccg cgtcgggccg gcgcgaggaa gcgctccgag
    18421 tcctttcccg gctcgagggg ccttcgatgg ccggcagcgt cagcccgtac aacgtggcgc
    18481 taatcaactc cgccctcggg cgcaaagacc tggccttcga gtggctggag agggccgcgg
    18541 ccgtcgacga ccttcacccc gccttcctcc gctacgaccc gcagctacag cccctcaagg
    18601 cagacccgag gttcacagac atcctgcgcc ggcataaact cgacatctct cccggctgac
    18661 cggctgagaa aaggcgtgag gcggccgagg tgatccctcg cctcggccgc ctcacgcccc
    18721 cgccttctgc cgccggctca gtccaggata gttatctcgg ccgcggagcg cgcctcctcc
    18781 agaaactcgt ccgttcccga ctctatcttg gcctccatca gctccgactg aatctcattg
    18841 taagcgtctt cgagcttcgg gacgacgacg ccgggcgcct gcctgcgccg gcgggggacg
    18901 taaacgtcgc ggtaatactc ggccacctcc tgcggcgtca cgacggtgaa ggagcggaac
    18961 cggaagtcga gatacttgct tatgcgcacg cgctcctgga ctatctcgcg cagttgcgtc
    19021 gagtcctcgc ccaagccgac gcgcgcgagc cgcgcgtaaa actctgactg cgacgggaag
    19081 aggccgatta gccgcttcag ctcggccgct atctcctccg aggtcggcgc gaccgacggg
    19141 agcttctccg cctcctgcga gatgagccgc tggtctatga gcagatcgag agcgcgccgc
    19201 aagtcctcct cgcgcgggct ctcgataggc acgccgggct gtaaagcgag ctgccagagc
    19261 aggtctgtgt gcgtgatgag ttccctgccg ttgacgacgg cgaccatctt gtcaaccacc
    19321 tccgcgcccg tgcgcggcgc ctgctgcgac tgcgcgcgcg cggccggcgc gagcagggct
    19381 aacgaaatca gtaacagcgt tcttctcata aagcctcagg ccctcccgcg tcgcccgatg
    19441 cggcgcgcaa cagcgacgcc tatccgccag agcccgaagg ccgccagcgc gaagaggaag
    19501 tggtgaatcg caagcacgta gcggtactcg gtgtgtagcg ccgactgcac gcagaagtag
    19561 taggccggaa aggtcatcag cacgacgagc gcggcgcgcc tcccttcggc cgcggcgaac
    19621 gcgagccccg cgagcgcgag cggcagcatg acggccgtga cgaaaagctt ctgcgccgcg
    19681 gcgacgaaca cgcgcgccgg ccgcgcccat aggagcgagg ccgggccgag cttgaagagc
    19741 cccgcgcgcg ctatgtggac gacggggccg ggcggctcgg acggcgcgtt cgagaagact
    19801 agccgcacgc gccccgcgcc cgcgctcacg aacggcaggc gcgcgagctg cggccccgga
    19861 ttgacttcgc ccgcctcgat aatcgtcgag gcgagcacag cgcccgtctc cgcgtcagcc
    19921 gcggccagcg tcatgcgccc gcgctcgacc gcgagcggga cttcgaagag gtagtcggtg
    19981 ccggcctcga cctccgcggc cgggagggcg agctgcgggc cgtccttcga ctcgtcgccc
    20041 gtcaaaatta cctcgcccgg agagccgggc gcgtaggccg agcgggcgcg cggcgaaaga
    20101 gcttgcgccc cctcggccag ctcgacggcc gagacagacc agacgcgctc cgcgccccgg
    20161 cccgcctcca tcccgctcgt cacctgcggg cgcggcgaga ttgtccgcgc tcgctcgagc
    20221 ctcagcatcg agagggcgcg ccgcgccatc accgaggcga accagaaggg gttgcgactt
    20281 acgacctgcc acgcgcgcgc gagccgtgcg cggtcgcggc ggactgcgtc ggggccgaag
    20341 agcgactcga ggtattcggg cctgccctcg cgctcggcct cctgccgcat gatgccgagg
    20401 tctgtcgcgg gaatcccgaa gcggccttct gcgtcatagt ccgctatgcc ctcgagcgcg
    20461 gtctgcccgg cgccgagcga gacggggatg aaggcgccga agacgactgc gtttcgtaag
    20521 gtgagcggcg cgacgacgag cgcggcgccg gcgatcacga gcagggcata gcgcgcgcgc
    20581 ctctccttgt cgaagagcag gagcgcggcg gcgccgagga agggcgcggc gaggagcgcg
    20641 ttcgccctca gccagcagga gaggccgacg agcgcgcccg ccgcgaacag gagccacggg
    20701 cgctcgcgtc tcgcggcgag cgcgaggcag taggcggcgg cgacaagagg cagcactgcg
    20761 agcgtgtccg gcaaaagcag cacggagttc caggcgaact gcggcgagag cgcggcaaag
    20821 aggccggcga gcaggccagc agcccgcgac agaagctccg aggcgagcag gagtgtcagg
    20881 acggcggcga gcgagtcggc cgcgatttgc aggaggcgcg cgcgcgagtc ggtctggccg
    20941 aggagggcga gcacgagcgg gtagccgggc ggatggccga gcgtgtcggg gtctgccgct
    21001 ggcgacgcgg gactgaagaa gcccgccggg ccgctcgcgg ccagcagccg cgccatgtgc
    21061 ctgtagttct ctgtgacggc cgtctgcact ctgcctgctt cgagccgcgc gtcctgccac
    21121 atgaggaggc ggacgccgaa ggcgacgagg aagacgagag ccgcgctgat tagaagtcgg
    21181 gagttggaga gcgcgggcgc ggcgaccgtc ggcttcgtcc cggcttgctt gtcccgcgcg
    21241 ttcgggctca ccgcagaggc gcaaagggcg cggagggggc gcggagagaa gcgctcagcc
    21301 ctccgcgcct cctccgcgaa ctctacgcct ctgcggtgaa tcacgccctc cataggctca
    21361 gcctagaacg tctgcccgaa gcggaagtga atctgcgcgt tgcgcaggcg gtggacggcc
    21421 gtgccgccgc cgaactgcgg tatcaggaac tcgggcgggt taagcaggta gccgtagtca
    21481 acgccgagcg agccgatggg cgtcttgagc cggaggccca agccgacggt gtgcgtccac
    21541 ttctgccgca ggttcgggtc gcggcctggg tcgctcgcgc gcccgaagag gtcgcccacg
    21601 cgctcgaaga cgttgccgcc gtcgtagaac ggcacggcct gtatgtcgcg cgttatcggc
    21661 accctcgcct cgaggttcaa tatcgccata gcgttcccgc ctatcggcac agtgaagggg
    21721 ttcagggtca cgggctcgcc cttctcgtta cggaacgtgc cgcagggcgg gagcgggccg
    21781 aagggcgagt cgggggcggc gcctccgggg acggggccga aggtgcagaa gggcgcgacg
    21841 acgcgcggcc ccgcctcctc gtagctgaag ccgcgcaggg tcgtcgagcc gcccgtgaag
    21901 aagcgctcgc tgatggggag gcgcaggtct gcgtcgtcta tgcggccgtt gtcgttgcgg
    21961 tcggtcgggc tgaatatctt cgcgaggccg aactgcgcgc tcgccgcgag caccgtgttg
    22021 cggaaggccg gcagcagctt gtagcggcgg tagccgacga gcagcttgtt gaaggagatg
    22081 ttgccgccga gctgcttgag cgcgatggcg tagtcaacgg agacgaactc gccgcgcgtc
    22141 gggtcgaact gtcggtcgcg cgtgtcgcgc gcgaaagagg cgccgaagcg cgacagtcgc
    22201 acggtctggt ctggccgcag cacgggcgcg atcagcaggc tcccgatgtt gaagaggcgc
    22261 acgtcctcgt agttgtaccg gaggaatatg gtgctgcgct tgcgcacggc cccggaggcg
    22321 ctcaggtcga gctcgaggtc gcgctgtgtc tcgatgttga aggtcaggcg gttgatggag
    22381 gggcctttga cgccctggcc gaactcgtca atgaggttgc cttccgggtc gaagcgctgg
    22441 acgatgccgt cgctgccgcg gtctatggtg gagcggaaga agcgcgtcac ggccgtgtcg
    22501 cgctggtact ggatggaggc ggtcaggggc gcgaactcgc gctcgccgta gcgccggaag
    22561 gtcgggtcga aatattcaaa ccggactagc tgttgcaggc ggctgaagcg cgagcgtatg
    22621 gcgccctggc ggagcttgcc gaagaggttc gtgttgcgga gctcgaagcc tccgagcggc
    22681 cccgtgtcgg tcgagaagcc cacgatgtag tctgtcgtga tgcgcttgcg ctcttcgagg
    22741 tcaattatca cgtcgcggcg cttgaagccg ccctcggtct cgcccgcgtc ctccgttcgt
    22801 atgagcacct gccggaaggc gtccgtggtg ttcagcagaa tccgctcgct ctcggccagc
    22861 tcgtcgccgc gcagcacctc ctgctcgcgc aagggtattg cgtcgaggac ggcctggcgg
    22921 tcggtctgaa ccagcccgtt gatgaagatg cggttgatga agaacttgtc ggactccgtc
    22981 acgtcataga cgaggcggac gcgctcgtct gtgctgccgg gcgcgggcgg caggtcaacg
    23041 acggagagcc gcacctcgga ctcgacgtag ccgcttcgga cgtagtgggc gcgcatgcgc
    23101 tcggcgtcgg cgcgcgcctg cgagcgcgag taggggccgc cgtcaacgac gcacgcctcg
    23161 tcgggcaggg ggtcggccgg gcagcgggcg ccccggagtt gcgcgcccgt gtaaatctgg
    23221 ttgccgcgcg tctccactcc cgcgacgcgc gtgagaggcc cctcggtcac ctcgaaggtg
    23281 atgatgaggt tctccccttc gagcgagacg ccccgccgga cgttcacggc ggcccggcgg
    23341 tggccgaggt cgcgcatgcg cgcctctatg gtggcgcggt cgcggtcgag cgcgtcctcg
    23401 ctcgtgtagc cgcggccgta gccgagcagc gggagtatgc cgaggatgtt ggcctcgcgc
    23461 gtgcgcaggt cgtcctccac gtcggcgatt gcgagcttct cagtcccctc tatgcggacg
    23521 tcggtgagct tgaagcggcg gccgcgctcg acgttgtagg cgatggtgac gttgcgctcg
    23581 ttcagctcgt cgaggttgag cgcctcgcaa gcgcccaagc ccagaccggc ctcgggggcg
    23641 ccgggcagcg gcggcaggtt cgtcggcggc gggggggcga gcggcgggac gaccgagcac
    23701 gaggccgtca cctcggcgaa gaagtagccc tcctcctgaa gccggttgcg caggcggcga
    23761 gcgccctcga agatggcgga ggtctcgata gtcccctcgc ggcggacggg caggagctcg
    23821 cgctgccgct tttcgctcag ctcgtagccc tcgattcgca cggccacgcg cgggccgacc
    23881 gtccccgcga cgcggacgct tatgcggttt gtggcggagt cgaggcgtat ctccggctct
    23941 tcgatgcgcg gggcgaggcg cccttcggag atgatggcct gccgcagttg cgagacggtc
    24001 tcgccgagcg cggcctgcgt gaagcgtcgg cccggttgca ggggaagctc cgcgatcacg
    24061 ggcgcggggt taaagccggc gatctgcacg tcgaggcgct cgagcagcgt gggcgggccg
    24121 ggctccacga ggaaggtcac ggtcgagcgc gtgcgcgtgg cgtcgaggct ctgctcgtag
    24181 tcaaccgtgg cgcggtagaa gccgcggtcg cgcatgtaga tttggatggc gtcggcgctc
    24241 tccttgagcg cctgctcggt gaggcgcttg ccggggtcga ggaggttcac gcgcccgcgc
    24301 agctcgtcct cggttatccc cgtgccttcg gtgacgccca cctcgaactc gatggcggcg
    24361 actacgacct gcggcttgat tatgaagcgg acggccacgc gcggacggcc gtcttcgccg
    24421 gctgggcccg cggcgtccgc cgcctcgacg cgcgcgttcg ccacacgccc cgtgtcgaag
    24481 agcgcctgca gggactcgcg cacgagcacc gcggagaagc gctgcccgcg cgcgatgcga
    24541 acccgcgagc gaagctcggc gagcgccgac tcctctacgg aagcctcctc gaccgcgacc
    24601 tccacgctct cgattgtgcg cccctcgaac ctgctaaggt cgcgcgccgc gcgcacgtcg
    24661 gcacgcgcgc ccgccgccgc ggccgccagc acgagtattg cgagaagaac ccttcggaca
    24721 gacacgaagt tgttaagaac cctgcttgat tgccgtcgag cccgacgccc tcagtaacgc
    24781 ttcctgaacc gcagctcgaa gttgaagttg ttgctgcgcg cgcgcagcgt gtcggtcgag
    24841 ccttgctggt actgcgccac gaaggagagg cgatccgaga cgcggtactc gacggcgacg
    24901 acctggttcg gctcgcccgt cacgttcgtc gagaaggtga cggcgaggtt gcggttcacc
    24961 tgacggccga ccgtgaggcg cgccgtgggg ctcgcgccgc cgcggcccgc gatgacgggg
    25021 tcgaactcga agcggttaag gccgaacagc ttgtcggtcg ccttccggac gggcgcgctt
    25081 atgaggctct cggtcaggag gctagtcgcc gtccccagcc ccgtctgcgc aagcgtcgag
    25141 acgccctctg agccgcccga cagatcgccc gtcgttatca gcgagaccac gtcggtctgc
    25201 ggcagcgccg ggtcggagct gaggctcgtg acgggctgcg agagcggccc cgttatcccg
    25261 gcgcgcacgc ggtagccgcg tatgtcggcc tcggcctgta tgttcaagac ggggtcggcg
    25321 tcgcggcgcg gcggcaggtc aatgatgccg cgctgaagct cgaactgctc gttgcggaag
    25381 gcgagcgtgc cgcgcgtgac cgtgatgcgc cccgatatga gtgggtcgtc cacggtgccg
    25441 cgcgctcgaa ggcttatcga gccgaccatg tcggctaggt tgttgcgcac caccagcgcg
    25501 tcgcgcccct gtatgatgag gtcgagggtc gtgaccgagc ctgcgagcag gccgccgcca
    25561 ccgccaccgc ctccctccgt gatgggcgcc tcgcgccgct ggtctataag gtctgcgagg
    25621 tcgagg
//
LOCUS       DASPKR010000572         3569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1897894, whole genome shotgun sequence.
ACCESSION   DASPKR010000572 DASPKR010000000
VERSION     DASPKR010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3569)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3569
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1897894"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..510)
                     /locus_tag="VD968_15465"
     CDS             complement(<1..510)
                     /locus_tag="VD968_15465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15842.1"
                     /translation="MKNKGRALGLLLCLLLSGPARAQSDRHGHLLEVRPAAAPVQAHA
                     AAAPAELKIVSYNIRWRGGEELKELVEILRSDSEVGGAAIVGLQEVDRAKKRTKNEHT
                     GRLIAESLGMHMAWAAPPPARDSEEEETGVALLSPFPMTDVERIVLPHEGPNKRRRVA
                     VGATVHVGEV"
     gene            complement(500..1444)
                     /locus_tag="VD968_15470"
     CDS             complement(500..1444)
                     /locus_tag="VD968_15470"
                     /inference="COORDINATES: protein motif:HMM:TIGR00147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HYE15843.1"
                     /translation="MTKSRLIVNPVSGTDAAPDYIRVINERLRAALGDLDIVMTVAAG
                     DALRLGERAAREGYGRLFVAGGDGTLNEVLNGVARVDGALGRVTFGVIPLGTGNDFAA
                     ALGLPEDVERAIEIMLEGRTVEADVGVLNDRHFINVSAGGFIAEVSGAVSPQLKSIAG
                     KLAYIIGGAQALWEHEPARARLRVEGEDGGERSAEVGVQMFAVCNSRLVGGGQPIAPN
                     ALIDDGALDVCIVEAMPTLEFVGLLGSVPGGSHVEDERVAYFRARSLEFEFERPVKVN
                     TDGEVLEATHCRYSVLPRAARFLAGDAPFTKENNSHEE"
     gene            complement(1469..2239)
                     /locus_tag="VD968_15475"
     CDS             complement(1469..2239)
                     /locus_tag="VD968_15475"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HYE15844.1"
                     /translation="MELTVLGSGTAVPHPRRASSAHWLAAQGGTVLLDPSAAAVHRMP
                     QEGCDWAGLDAVWVSHFHLDHVGGLAPFLFGTRHAPQTRDRRKPLTIFGPRGTRKLLE
                     KFDAANKYKLFDQPFPLEVREVSPRSEFEMLPGLRAETFSTPHTRESLALRLTGEGGA
                     SFIYTSDTGYTESLAAFARGASLFVMECSFFREKPVETHLELADAMKLARLSGARRVV
                     LAHLYPEWDGVRIPEEARKLWDGETIEAQDGLRLAITP"
     gene            2436..2975
                     /locus_tag="VD968_15480"
     CDS             2436..2975
                     /locus_tag="VD968_15480"
                     /inference="COORDINATES: protein motif:HMM:NF024952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-5' RNA ligase family protein"
                     /protein_id="HYE15845.1"
                     /translation="MQGLVTLLDDRHYARVEAVWEELGQKFDVRGMYVNAFPHFSYQV
                     AESYEDAACERLLGEIASRTRPFRVRTAGLGIFTVSTPILYIPLVRSPHLSQLHREIW
                     DGARQAVPGAVAHYYHPDEWAPHITLAQGDIDQDKLAEIVRVLSLRNFHWELTVNNLA
                     IIYDTGREQGVRCRFDLKE"
     gene            3038..>3569
                     /locus_tag="VD968_15485"
     CDS             3038..>3569
                     /locus_tag="VD968_15485"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HYE15846.1"
                     /translation="MSAQETQLDVLAVYSHPDDVELTAGGTLLKLKSLGYRTGVCDVT
                     RGEMGTRGTPEIRAEESRRAAEILKLDARVNLGQPDGHVWLTEDSRRALVRVLRTYRP
                     KVLFAPHWDDPHPDHAHTAMIVREAARLSSMRRYDQEAGQGAVPMPMIAHSAYSRLVV
                     PSFVVDISEFVETKLEA"
BASE COUNT          563 a         1237 c         1218 g          551 t
ORIGIN      
        1 cacttcgccc acgtggactg tcgcgccgac ggcgacgcgc ctgcgcttgt tcggcccctc
       61 gtgcgggagc acgatgcgct caacgtccgt catggggaat gggctcaaga gcgccacgcc
      121 cgtctcctcc tcctcgctgt cgcgcgcggg cggcggcgcg gcccaggcca tgtgcatccc
      181 gagggattcg gctatgagac ggcccgtgtg ctcgttcttc gtgcgcttct tggcgcggtc
      241 aacctcctga aggccgacga tggccgcgcc gccgacctcg ctgtcgctgc gcagaatctc
      301 caccagctcc ttcagctcct cgccgccgcg ccagcgtatg ttgtaggaga cgatcttcag
      361 ctcggcgggg gcagccgccg cgtgcgcctg gacgggcgcc gccgcgggcc gcacttcgag
      421 caggtggccg tgcctgtccg actgcgcgcg cgccgggccg gagagcagga ggcagagcag
      481 gagcccgagc gcgcggcctt tattcttcat ggctgttgtt ctccttcgtg aacggggcgt
      541 cgcccgcgag gaatcgcgcg gcgcgcggga gcacgctgta gcggcagtgg gtggcttcga
      601 gcacctcgcc gtcggtgttg accttgacgg ggcgctcgaa ctcaaactca agcgagcgcg
      661 cgcggaagta tgcgacgcgc tcgtcctcta cgtgcgagcc gccggggacg ctccccagga
      721 gccccacgaa ctcgagcgtc ggcatcgcct cgacgataca cacgtcgagc gcgccgtcgt
      781 ctatgagcgc gttcggcgcg atgggctggc cgccgccaac gaggcgcgag ttgcagacgg
      841 cgaacatctg cacgccgacc tccgcggagc gctcaccccc gtcctcgccc tcgacccgca
      901 ggcgcgcccg cgcgggctcg tgctcccaga gcgcctgcgc gccgccgatg atgtacgcga
      961 gcttgcccgc gatgctcttt agctgcgggc tgaccgcccc cgagacttcg gcgatgaagc
     1021 cgccggccga gacgtttatg aagtggcggt cgttcaggac gcccacgtcc gcctcgactg
     1081 tgcgcccttc gagcatgatc tctatcgcgc gctccacgtc ctcggggagg ccgagcgccg
     1141 ccgcgaagtc gttgccagtc ccgagcggta tcacgccgaa ggtgacgcgc ccgagcgcgc
     1201 cgtccacgcg cgccacgccg ttcaggactt cgttgagggt gccgtcgccg ccggccacga
     1261 acagccgccc gtagccttcg cgggccgccc gctcgcccag ccgcagggcg tcgccggccg
     1321 ccacggtcat cacgatgtcc aaatcgccga gcgccgcgcg cagccgctcg ttaatgaccc
     1381 ttatgtagtc cggcgccgcg tcggtgccgg agacggggtt cactatcagt cgggatttcg
     1441 tcatcgaggg ctcgcccggc ttaagagctc agggggtgat tgcgaggcgc aggccgtcct
     1501 gcgcctcaat tgtctcgccg tcccagagct tgcgcgcctc ttcggggatt cggacgccgt
     1561 cccactcggg gtaaaggtgc gcgagcacga cgcggcgcgc gccggagagc cgggcgagct
     1621 tcatcgcgtc cgccagctcc agatgcgtct cgaccggctt ctcgcggaag aaggagcact
     1681 ccatcacgaa gagcgaagcg ccgcgcgcga acgcggcgag cgactcggtg tagcccgtgt
     1741 ccgacgtgta gatgaaagac gcgccgcctt cgccggtcag acgaagcgcg aggctctcgc
     1801 gcgtgtgcgg cgtcgagaag gtctcggccc gaaggcccgg cagcatctcg aactccgagc
     1861 gcggcgagac ctcgcggact tccagcggga acggctggtc gaacagcttg tacttgttcg
     1921 ccgcgtcgaa cttctcaagc agcttgcgcg tcccgcgcgg gccgaaaatc gtcaggggct
     1981 ttcggcggtc gcgcgtctgc ggcgcgtggc gcgtgccgaa gaggaagggc gcgagcccgc
     2041 cgacgtggtc gaggtggaag tggctgaccc acacggcgtc caggcccgcc cagtcgcagc
     2101 cctcctgcgg catccggtgg acggccgcgg cgctggggtc gagcagcact gtgccgccct
     2161 gcgccgccag ccaatgggcc gaggacgcgc gccgcgggtg cggcacggcc gtccctgagc
     2221 cgagcacggt cagctccatt tcacactccg cctctcctga tacgggggaa cgactgagag
     2281 gctaccaaac cgccccgcgc aaggcaaaac aaaaaaagcg cgggggcggg cagcgcgcga
     2341 ccgtctgtgg cttcgcttga ccgggcgcgg agccttgcgt tacatctaca tcgtcgttca
     2401 agagacagtc ggggcgggaa gggtttaagc gtctgatgca gggcctggtc acgctcctcg
     2461 acgaccgcca ctacgcgcgc gtcgaggccg tctgggaaga gcttgggcag aagttcgacg
     2521 tgcgcgggat gtacgtcaac gccttcccgc acttctccta ccaggtggcc gaatcctatg
     2581 aggacgcggc ctgcgagcgc ctgctcgggg agatcgcctc gcgcacgcgc ccgttccgcg
     2641 tgaggacggc gggcctcggt atcttcaccg tctcgacgcc gatactctac atcccgctcg
     2701 taaggagccc gcatctctcc cagctccacc gcgaaatctg ggacggcgcc cggcaggcag
     2761 tcccgggcgc cgtggcgcac tactaccacc ccgacgagtg ggcgccgcac ataacgctcg
     2821 cgcagggcga catagaccaa gacaagctcg cggagatagt gcgcgtcctg agcctgcgca
     2881 acttccactg ggagctgacc gtcaacaacc tcgccatcat ctacgacacc ggcagggagc
     2941 agggcgtccg ctgccgcttc gacctgaagg agtagcgatc gtgaggcgga agaaaaactt
     3001 ccgcctcgcg acttctgcat tctgacttcc tgattttatg agcgcacaag agacgcaact
     3061 ggacgtgctg gccgtctatt cgcaccctga cgacgtggag ctgacggcgg gcgggacgct
     3121 cctgaagctg aagagcctgg gctacaggac gggcgtgtgc gacgtgacgc gcggcgagat
     3181 ggggacgcgc ggcacgcccg agatacgtgc agaggagtcg cgccgcgccg cggagattct
     3241 aaagctcgac gcgcgcgtga acctcggaca gccggacggc cacgtgtggc tgacggaaga
     3301 ctcgcgccgc gcgctcgtcc gcgtgctcag aacctacagg ccgaaggttc tgttcgcgcc
     3361 gcactgggac gacccgcacc ctgatcacgc gcacacggcg atgatagtgc gcgaggcggc
     3421 gcggctctcc agcatgcgcc gctacgacca ggaggcgggg cagggggccg tgccgatgcc
     3481 gatgatcgcg cactcggcct actcgcgcct ggtcgtgccg tccttcgtcg tggacatctc
     3541 ggagttcgtc gagacgaagc tcgaagcca
//
LOCUS       DASPKR010000573         3632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1252493, whole genome shotgun sequence.
ACCESSION   DASPKR010000573 DASPKR010000000
VERSION     DASPKR010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3632)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3632
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1252493"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..253)
                     /locus_tag="VD968_15490"
     CDS             complement(<1..253)
                     /locus_tag="VD968_15490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15847.1"
                     /translation="MAADKDLQSVQQARDLVEAAHRAQGALARFDQGKIDRVCGAMAA
                     AALREAARLGAMAVEETGYGIPDDKREKNRFAAEDVWNYF"
     gene            complement(471..740)
                     /locus_tag="VD968_15495"
                     /pseudo
     CDS             complement(471..740)
                     /locus_tag="VD968_15495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183618.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
     gene            974..1777
                     /locus_tag="VD968_15500"
     CDS             974..1777
                     /locus_tag="VD968_15500"
                     /inference="COORDINATES: protein motif:HMM:NF024252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYE15848.1"
                     /translation="MNPKTSDQTPDGGGAGGSLGEELRHARERRGVGLREISEQTRIT
                     MRHLEAIEADDYKHLPGGIFNKSFVKAYARYVGFDERRALDLYERTARERGDASDDGP
                     QPPQRTRVYTGDPARSPAVTAALSAVIVGILILIIYAGLHYYRRTEGGAAGAQATPTP
                     AAPPGQQAQAQTPTPPAEQGFNVQVKAKGRAFWLTSWQGSEKKKGRFITPDKPEEFAP
                     EDSLNLFFDKASADALEVSVNGQTLRTPDGEGREITWTITRDNYRQFLP"
     gene            1795..2154
                     /locus_tag="VD968_15505"
     CDS             1795..2154
                     /locus_tag="VD968_15505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15849.1"
                     /translation="MATKKGSKKAAAKKAAGGKRAAKASKKGAAGAADQAKELLAVLG
                     RVHEIETELAEEMLAQPAGAYSFRKTYDTLVRSYQELLQPFGALDSRRYAYTLARLSH
                     TRLDMIHTFRKKGAGGP"
     gene            2206..>3632
                     /gene="guaB"
                     /locus_tag="VD968_15510"
     CDS             2206..>3632
                     /gene="guaB"
                     /locus_tag="VD968_15510"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HYE15850.1"
                     /translation="MLTADLQEGLTFDDVLLVPARSDVMPAETDTSTQFTRGITLRIP
                     LCSAAMDTVTESRLAIAIAQQGGIGVVHKNFPIERQAEEVDRVKRSESGMIVDPVTIR
                     PDRPVSEACAVMERYKISGVPVVDEDGHLVGIITNRDLRFETRFDIAVSQVMTPQPLV
                     TVPVGTTLEEAKGVLQKHRIEKLLVVDGDKHLKGLITVKDIQKAIKYPNAAKDDLGRL
                     RVAAAVGATGDFVERADELVKARVDCLVVDTAHGHSSRVIEAVREIKRRHPDTQLIAG
                     NVATGEATRELIKAGVDAVKCGIGPGSICTTRVVTGAGVPQMTAIFNCVEAARGSGVP
                     VIADGGVKFSGDVAKAIAAGADVVMIGSLFAGTEESPGELILFQGRSFKAYRGMGSIG
                     AMREGSKDRYAQETTDVESKLVPEGIEGRVPYKGTLADMVTQLVGGLRAGMGYTGCRN
                     IREFQEKTRFVRISPAGLKESHVHDV"
BASE COUNT          660 a         1203 c         1210 g          559 t
ORIGIN      
        1 tgaaataatt ccaaacgtcc tcggcggcga agcggttctt ctcgcgcttg tcgtcgggga
       61 taccgtagcc cgtctcctcg acggccatcg cgccgagccg ggccgcctct cgaagcgccg
      121 ccgcggccat cgccccgcag acgcggtcta tcttcccctg gtcgaaacgg gccagcgcgc
      181 cctgcgcgcg gtgcgccgcc tcgacgaggt cgcgcgcctg ctgcaccgac tgtaaatcct
      241 tatccgccgc catgccggca cctccaaaag agcagatgtc agatgtcgta tgtcagtaaa
      301 gaccgggctc tttactgaca tctagcatcc agcatctatt tacttctttc tctgttattc
      361 tccttcgcgc cggccgggag cgagcggccc tggtcgccct cgctcagttc gcctcgggcg
      421 ccgccgccgc cgacggcgcg ctcgtcgggg ctgtagcccg tgcggccgtt acgcggcagc
      481 acgcgctcga cttccgtgtg ggggcggggg atgacgtgca cgctgatgag ctcgccgacg
      541 cggcgtgcgg ccgccgcgcc cgcgtcggtc gcggccttga cggcgcccac gtcgccgcgc
      601 acgaatatcg tcacgtagcc ggcgccgatg tactccttgc cgatgagctg gacgttggcg
      661 gccttgacca tagcgtcggc ggcctcgacg gcaccgacga agcccttcgt ctccaccatt
      721 cctagcgctt cgagaggcat cttttaaagt cctcgcttct ttggctgtga tagttaaact
      781 gaaccgggaa cttgctcgtg tgctgcaacc gtagcaccgc gcggcgcaaa gttcaagacg
      841 cgcgcatccc cttctgcggg caaagtttga cacccgtctc gggcgcacat tatattgtgg
      901 caaaagtcgc ggcgacgcct gccgggtgtg ccgcggccgg gggcttccga agcttgctta
      961 gacttggcgg cacgtgaacc caaagacctc tgaccagact cccgacggcg gcggcgcggg
     1021 cggctctctg ggcgaagagt tgcgccacgc cagagagcgg cgcggggtgg gattgcgtga
     1081 aatctcggag cagacgcgca tcacgatgcg ccacctcgaa gcgatagagg ccgacgacta
     1141 caagcacctg ccgggcggca tcttcaacaa gtcattcgtg aaggcttacg cgcgctacgt
     1201 cggcttcgac gagcggcgcg ccctagacct ctacgagcgc accgcgcgcg agcgcggcga
     1261 cgcctcggac gacggccccc agccgcccca gcgcacgcga gtctatacgg gcgaccccgc
     1321 gcgctcgccc gccgtcacgg ccgccttgag cgccgtcatc gttggcatcc tcatactgat
     1381 aatctacgcc ggcctgcact actaccggcg caccgagggc ggggccgcgg gcgcgcaggc
     1441 gacgcccacg cccgcggccc cgcccggcca gcaggcgcag gcgcagacgc ccacgccccc
     1501 ggcggagcaa gggttcaacg tgcaggtgaa ggcgaagggg cgcgccttct ggttgacctc
     1561 gtggcagggc tcggagaaga agaagggccg attcatcacg ccggacaagc cggaggagtt
     1621 cgcgcccgag gacagcctca acctcttctt cgacaaggcg tctgccgacg cgctcgaagt
     1681 ctccgtcaac ggccagacct tgcgcacgcc cgacggcgag gggcgcgaga taacgtggac
     1741 gataaccagg gacaactaca ggcagttcct cccctgaccg gaggtataaa gaatatggcg
     1801 acgaagaaag gctcgaagaa ggcggcggcg aagaaggcgg cgggcggcaa gcgcgccgcg
     1861 aaggcgtcga agaagggcgc ggcgggcgcc gcagaccaag ccaaagaatt gctggccgtg
     1921 ttggggcgcg tgcacgagat cgagaccgag ttggccgagg agatgctcgc gcagcccgcg
     1981 ggcgcttaca gcttcaggaa gacgtacgac acgcttgtgc ggtcttacca ggagctgctg
     2041 caacccttcg gcgcgctaga ctcgcggagg tacgcctaca ccctcgcgag gctcagccac
     2101 acgcggctgg acatgattca cacgttcagg aagaaggggg cgggcgggcc gtgagcggcc
     2161 cgtcgccgtt tagggcgcaa gaatagtttt acggagtttt aagagatgct cactgctgac
     2221 cttcaagagg gcctgacctt cgacgacgtt ctcctggtgc cggcgcgctc cgacgtgatg
     2281 ccggccgaga ccgacacgtc cacgcagttc acgcgcggca taaccctgcg cataccgctc
     2341 tgctctgcgg cgatggacac cgtgaccgag agccggctcg ccatcgcgat tgcgcagcag
     2401 ggcggcatcg gcgtcgtcca caagaacttc cccatcgaga ggcaggccga ggaggttgac
     2461 cgggtcaagc gctccgagtc aggcatgatc gttgaccccg tgacgattcg ccccgaccgc
     2521 cccgtctccg aggcgtgcgc cgtcatggag cgctacaaga tttcgggcgt ccccgtcgtt
     2581 gacgaggacg gccacctggt aggcatcatc acgaaccgcg acctgcgctt cgagacccgc
     2641 ttcgacatag cagtctcgca ggtgatgacg ccgcagccgc tcgtcacagt ccccgtcggc
     2701 accacgctcg aagaggcgaa gggcgtgctg caaaagcacc gcatcgagaa gctcctcgtc
     2761 gttgacggcg acaagcacct taaggggctc atcacggtca aggacataca gaaggccatc
     2821 aagtacccga acgcggcgaa ggacgactta ggccgcctgc gcgttgccgc ggccgtcgga
     2881 gccacgggcg acttcgtcga gcgcgccgac gagctggtga aggcgcgcgt tgactgcctc
     2941 gtcgttgaca cggcgcacgg ccactcctcg cgcgtcatag aggccgtgcg ggagataaag
     3001 cgccgccacc cggacacgca gctcatcgca ggcaacgtcg ccacgggcga ggccacccgc
     3061 gaattaatca aagcgggcgt tgacgccgtg aagtgcggca tagggccggg ctccatctgc
     3121 acgacgaggg tggtcacggg cgcgggcgtg ccgcagatga cggcgatatt caactgcgta
     3181 gaggcggcgc gcggctccgg cgtccccgta atcgccgacg gcggcgtgaa gttctcgggc
     3241 gacgtggcga aggcgatagc cgcgggcgcc gacgtggtga tgatagggtc gctcttcgcg
     3301 ggcacggaag agtcgccggg cgagctgatt ctcttccagg gccgctcgtt caaggcgtac
     3361 cgcggcatgg ggagtatcgg cgcgatgcgc gagggctcga aagaccgcta cgcgcaggag
     3421 acgacggacg ttgagtcgaa gctcgtcccc gaaggcatag aggggcgcgt gccctacaag
     3481 gggactctgg ccgacatggt gacgcagctc gtcggcggcc tgcgcgccgg catgggctac
     3541 acgggctgcc gcaatatacg cgagttccag gaaaaaacgc gcttcgtccg cataagcccc
     3601 gccggcctca aagagtcgca cgtccacgac gt
//
LOCUS       DASPKR010000574         3683 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_993055, whole genome shotgun sequence.
ACCESSION   DASPKR010000574 DASPKR010000000
VERSION     DASPKR010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3683)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3683
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_993055"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..715
                     /locus_tag="VD968_15515"
     CDS             <1..715
                     /locus_tag="VD968_15515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15851.1"
                     /translation="PPAAEDDDFILDLGFDDEPKPSAAPWGISQPHTVAAATAADAPS
                     AFAEAARGERQPSFAGTASSSPSFAQAERASSAAAEGDDTPWRDVVMQDGPGGFVFEA
                     ESEKEAPLGPVEPEVVPVEEPVPATVEGEFTDGSVEGDLPKPPAAGFVASSGSAPAAP
                     AEPSTEGFAVGEARVGIDERPAAAAAGRLSPEEVDAIARRVVELMSDRVVREIAWEVV
                     PELAERLTRRKLEEERGRD"
     gene            812..3616
                     /locus_tag="VD968_15520"
     CDS             812..3616
                     /locus_tag="VD968_15520"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HYE15852.1"
                     /translation="MEIPKAYDPKQAEERHYARWESEGCFAPEINGDPAAPVYSIVIP
                     PPNVTGSLHMGHALQHTIMDVLTRFHRMRGFRTLWLPGTDHAGISTQIMVERQLKKAE
                     GKTRHDIGRDEFLRRVWSWKEQYGGEIIRQMKREGLSVDWSRHCFTMDEHLTRAVREF
                     FVRCYEEGLIYRGPGIINWCPKDQTALSDLEVDKEAQAGRLYYLQYPVKGSDRRVTVA
                     TTRPETMLGDTAVAVNPSDERFKDLVGATLLLPIVNREIPVVADDFVDPEFGTGAVKV
                     TPAHDPNDYAMGKRHGLPLVTVIDERARMTAEAGAEFEGLDRYEARERVVAEFERAGL
                     LEKVVDYEFSITKCGRCRTVIEPLVSTQWFLKQAELAREPLRLVTEKHEPRFVPETPY
                     EKVYRNWLENLHDWTLSRQLWWGHRIPAWYDEAGNVYVARSEEEAREKAGTDGLAQDP
                     DVLDTWFSSALWPISTLGWPDATDDLKTFYPTSVLVTARDIIFLWVSRMMMTGMKFTG
                     EKAFEDVYITGTVFARDGQRMSKTKQNGVDPLDVFDKYGVDATRVVLASIGSTDTRWN
                     DNQVESYRNFANKIWNAARFCLLNSEGAQVGRGFEGEPAGWALHDRWIVSRLNRAARD
                     VGRAIETYQFHEAVYSLYHFFWDDFCDWYIELSKPDVTAAEPGPARDAARSRVVTVLE
                     QALRLLHPFMPYITEELWQRLPGVGAHSLHAAYGGAPVTPTIMLADYPRAEESLIDER
                     AEAEMQAVIDLISRVRNIRTELSVRPGEYLPRVFVGTPDAGMRRVFANGAGQIARLAR
                     ASKIFVGDRLERFSRPEGREPSGNGELAPPPPWPPALDATDPDGRDIPRASARAVLAG
                     GAEVAVPLEGLIDFEQERARIGREVEKLAKESEKLEAQLANPQFVERAPAEKVEELRA
                     RAEDIRRRSAALEQMLEALG"
BASE COUNT          621 a         1259 c         1251 g          552 t
ORIGIN      
        1 cccccccgcg gcggaggacg acgacttcat cctcgacctc ggcttcgacg acgagcccaa
       61 gccgtcggcc gcgccttggg gcatcagcca gccccacacc gtcgccgcgg ccacggccgc
      121 cgacgcgccg agcgccttcg ccgaggccgc gcgcggcgag cggcagccct ccttcgccgg
      181 cacagcctcc tcttcccctt ccttcgcgca ggccgaacgt gcgtcgtccg ccgcggccga
      241 gggcgacgac acgccgtggc gtgacgtggt gatgcaggac gggccgggcg gcttcgtctt
      301 cgaggccgag tcggagaaag aagccccgct cggccccgtg gaacccgagg tcgtgccggt
      361 cgaagagcca gtcccggcca cggtcgaagg cgagttcacc gacggcagcg tcgaaggcga
      421 cctgccgaag ccgccggccg ccggcttcgt cgcctcatcg ggctccgcgc ccgccgcccc
      481 ggccgagcct tcgaccgaag gcttcgccgt cggcgaggct cgcgtcggta ttgacgagcg
      541 cccagccgcc gcggcggccg gccgcctatc ccccgaagag gttgacgcaa tcgcgcgccg
      601 cgtcgtggag cttatgtccg accgcgtcgt ccgcgagata gcctgggagg tcgtcccgga
      661 gctggccgag cgcctcaccc gacgcaaact cgaagaggag cgcgggcggg attaaaagta
      721 atcgcggagt cgcgcgtgcg aaaggcggga gagggcgcta acctccccgc ctttttcctt
      781 ttggcttttg gcgtgcgtat aattgccgcc tatggagatt ccgaaggcat acgacccgaa
      841 gcaggccgag gagcgccact acgcgcgctg ggagtctgaa gggtgcttcg cgccggagat
      901 taacggcgac ccggccgcgc ccgtctattc catcgtcatc ccgccgccga acgtgacggg
      961 ctcgctgcac atgggccacg ccttgcagca caccataatg gacgtgctga cgcgcttcca
     1021 ccgcatgcgg ggcttccgca cgctctggct gcccggcacg gatcacgccg gcatctcgac
     1081 gcagataatg gtcgagcgcc agttgaagaa ggccgagggc aagacccgtc acgacatcgg
     1141 ccgagacgag ttcctccgcc gcgtctggag ttggaaggag cagtacggcg gcgagatcat
     1201 ccgccagatg aagcgcgagg gcttgagcgt tgactggtcg cgccactgct tcactatgga
     1261 cgagcacctg acgcgcgccg tgcgcgagtt cttcgtccgc tgctacgagg agggcctaat
     1321 ctaccgcggc cccggcatca tcaactggtg cccgaaagac cagacagcgc tctcagacct
     1381 cgaagttgac aaggaagctc aggccggcag gctctactac ctgcaatacc ccgtgaaggg
     1441 ctcagaccgg cgcgtgaccg tcgctaccac gcggcccgag acgatgctcg gtgacacggc
     1501 ggtcgccgtc aacccctcgg acgagcgctt caaagacctc gtgggcgcga cgctcctctt
     1561 gcctatcgtt aacagagaga tccccgtcgt cgccgacgac ttcgttgacc ccgagttcgg
     1621 cacaggcgcc gtcaaggtga cgcccgcgca cgaccccaac gactacgcga tgggcaagcg
     1681 ccacggcctg cccctcgtca ccgtcataga cgagcgcgcg cgcatgacgg cggaggcggg
     1741 cgcggagttc gaaggcttag accgctacga ggcgcgggag cgcgtcgtcg cagagttcga
     1801 gcgcgcgggg ctgttagaga aggtcgttga ctacgagttc tccatcacga agtgcggccg
     1861 ctgccgcacc gtcatcgagc ctctcgtctc gacgcagtgg ttcctgaagc aggccgaact
     1921 ggcgcgcgag ccgctgcgcc tcgtcacgga gaagcacgag ccgcgcttcg tgcccgagac
     1981 gccgtacgag aaggtctatc gcaactggct cgagaacctc cacgactgga cgctctcgcg
     2041 ccagctctgg tggggccacc gcatccccgc ctggtacgac gaggccggga acgtttacgt
     2101 agcgcgcagc gaggaggagg cgcgagagaa agccgggacg gacggtctcg cgcaagaccc
     2161 ggacgtgctt gacacctggt tctcgtcggc gctgtggccc atctcgacgc tcggctggcc
     2221 cgacgcgacc gatgacctga agaccttcta cccgacttcg gtgctcgtca cggcgcgcga
     2281 catcatcttc ctctgggtgt cgaggatgat gatgacgggg atgaagttca cgggcgagaa
     2341 ggcgttcgaa gacgtgtaca tcacggggac ggtcttcgcg cgcgacggcc agcggatgtc
     2401 gaagacgaag cagaacggcg ttgatccgct cgacgtcttc gacaagtacg gcgtggacgc
     2461 cacgcgcgtc gtgctcgcct caatcggcag caccgacacg cgctggaacg acaatcaggt
     2521 cgaaagttac cgcaacttcg ccaacaaaat ctggaacgcc gcgcgcttct gcctcctgaa
     2581 ctcggagggg gcgcaggtcg ggcgcggctt cgagggcgag cccgccggct gggcgctgca
     2641 cgaccgctgg atcgtctcgc gcctgaacag ggcggcgcgc gacgtgggcc gtgcgattga
     2701 gacttaccag ttccacgagg ccgtctattc gctttaccac ttcttctggg acgatttttg
     2761 tgactggtac atagagctct cgaagcccga cgtgaccgcg gccgagcccg gcccggcgcg
     2821 cgacgccgcg cgcagccgcg tcgtcaccgt gctcgagcag gctctgaggc tcctgcaccc
     2881 gttcatgcct tacatcacgg aggagctttg gcagcgcctg ccgggcgtag gcgcccactc
     2941 gctgcacgcg gcctacggcg gcgccccggt cacgcctacc atcatgctcg ccgattaccc
     3001 gcgcgccgaa gagtcgctga ttgacgagcg cgccgaggcc gagatgcagg cggtcataga
     3061 cctcatctcg cgcgtccgaa acattcgcac cgagctgagc gtcaggcccg gcgagtacct
     3121 gccgcgcgtg ttcgtcggca cgcccgacgc ggggatgcgc cgcgtcttcg cgaacggcgc
     3181 cgggcagata gcgcggctcg cgcgcgcgtc gaagattttc gtcggcgacc ggctggaaag
     3241 gttctcgcgg ccggaaggtc gggagccttc gggcaacgga gagttggcgc cgccaccccc
     3301 ctggcctccg gcgcttgacg cgaccgaccc cgacgggcgc gacatcccgc gcgcctcggc
     3361 gcgggcggtg ctggccgggg gcgccgaggt cgccgtgccg ctcgaaggcc tgattgactt
     3421 cgagcaggag cgcgcgcgca tcggccgcga ggtcgagaag ctcgcgaagg agtctgagaa
     3481 gctcgaggcg cagctcgcga acccgcagtt cgtcgagcgg gcgccggccg agaaggtcga
     3541 ggagctgcgg gcgcgcgccg aggacatacg gcggcgctcg gccgctctcg aacagatgct
     3601 ggaggcgctc gggtaatgaa ctggctcgac gagggggcgc tcttttcaca gatcggcaac
     3661 ttcctgcacg aggacatggg ccg
//
LOCUS       DASPKR010000575         2335 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1898891, whole genome shotgun sequence.
ACCESSION   DASPKR010000575 DASPKR010000000
VERSION     DASPKR010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2335)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2335
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1898891"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            178..1440
                     /locus_tag="VD968_15525"
     CDS             178..1440
                     /locus_tag="VD968_15525"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYE15853.1"
                     /translation="MISRHQLKSYAAAAALLTLTGLAAACGSRAQANKKGEQPEAAAT
                     PAAVQVTAAPAVMRNLPRFIEATGGLAADEQTDVAPTVGGRVLSVGVDLGSYVRKGQV
                     IAQLDGADARLRLEQAQSQLEQARAAVQQAEARIGLRPGQRFDPTRVAEVGAARAALD
                     LAEKQLRRYEQLLESGDVSRSAYDQQRAQRDQLRQQYEAALAQANQSYAAVATARAAA
                     ETARVAVEQARKGVGDVVVYAPISGFVAERPADVGEYVSTSTKVATIVRTNPLRVRID
                     IPEQAIASVRAGQSVSVSVSAYPDRAFAGRVARIAPNVSQQSRTLTVEAEVDNGENLL
                     KPGQFATVRILLPQTEPAVLVPARAVKTDGTTARVFVIRDGVAQERLVSTGQAEGDLV
                     EIRGNVAADELVATSNVEQLADGVPVRQ"
     gene            1465..>2335
                     /locus_tag="VD968_15530"
     CDS             1465..>2335
                     /locus_tag="VD968_15530"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYE15854.1"
                     /translation="MQKLAEICVRRPVFATMIILSLVVVGLFSFTSLGVDLFPKIDFP
                     TITINVVNPGASPREIETEITEQVEAAVNTISGIDELRSTSVEGVSQVFVQFLLDKDV
                     DVAAQEIRDKVNLIRGDLPETAEDPVIQKLDTDAAPILRIAVSAQKSLREVTDIADKE
                     IKERIESINGVGQVQIIGGASREIHVWVDPDKMRAFNVTVPEVVAAVRAQNMEVPGGR
                     VDEGARELTVRTMGRITNPADFNHVAVGNRGGYAVKISDIGYVEDGTEEQRTSSRLNG
                     QPAVTLVVSKQSGQ"
BASE COUNT          430 a          806 c          792 g          307 t
ORIGIN      
        1 caacaacacg ctctgggaca gagaccccgc gcgccgcatc ctgaacgtcc cgaacgagac
       61 ggccgcgcgc gagttcacgg agatactgct gcgcggcatc tcggccgacg cgaagagggg
      121 cgccgccacc gcgaagcgcg cggccccgaa agccaaaggg aaaaagaaat aagatttatg
      181 atctcccgtc atcaactgaa gagttacgcc gcggcggcgg cactcctgac tctcacgggt
      241 ttggctgccg cgtgcggctc gcgcgcgcag gcgaacaaga agggcgagca gcccgaagcc
      301 gcggcgacgc ccgcagccgt gcaggtgacg gcggccccgg ccgtcatgcg caacctcccg
      361 cgcttcatag aggcgacggg cgggctcgca gccgacgagc agacggacgt ggcacccacc
      421 gtcggcggcc gagtcctctc cgtcggcgtt gacctcggca gctacgtccg caaggggcag
      481 gtcatcgcgc agctcgacgg cgccgacgcg cgcctgcgct tagagcaggc acagtcccag
      541 ctcgaacagg cacgcgccgc cgtgcagcag gcagaggcgc gcataggctt gcggcccggt
      601 cagcgcttcg acccgacgcg cgtggccgag gtcggggccg cgcgcgccgc gctcgaccta
      661 gccgagaagc agctccgccg ctacgagcaa ctgctcgaat cgggcgacgt ttcgcgctcg
      721 gcttacgacc agcagcgcgc gcagcgcgat cagttgcgcc agcagtatga ggcggcgctc
      781 gcgcaggcca accagtccta cgcggccgta gcgaccgccc gcgcggcggc cgagacggcg
      841 cgcgtcgccg tcgagcaggc ccgcaagggc gtgggcgacg tggtggttta cgcgcccatc
      901 agcggcttcg tcgcggagcg cccggccgac gtgggcgagt acgtctcgac ctcgacgaag
      961 gtggcgacca tcgtgcgcac gaacccgctc cgggtgcgga tagacatacc cgagcaggcg
     1021 atagcgagcg tgcgggcagg ccagagcgtc tccgtgtccg tgagcgccta ccccgaccgc
     1081 gccttcgccg gccgcgtggc gcgcatcgcg ccgaacgtct cgcagcagtc gcgcacgctc
     1141 accgtggagg ccgaggttga caacggcgag aacctgctca agccggggca gttcgccacc
     1201 gtccgaatac ttctgccgca gaccgagccg gccgtcctcg tccccgcgcg cgccgtaaag
     1261 accgacggga cgaccgcccg cgtcttcgtc atacgcgacg gcgtagcgca ggagcgcctc
     1321 gtctctacgg ggcaggcgga gggcgacctc gtggagatac gcggcaacgt cgccgccgac
     1381 gagctagtcg ccacctcgaa cgtcgagcaa ctcgccgacg gcgtgccggt caggcagtag
     1441 ccccgagcag ataagcggag agttatgcag aagcttgccg aaatttgcgt gaggcggccc
     1501 gtcttcgcga cgatgattat cctgtcgctg gtcgtggtgg gcttgttctc gttcacgtcg
     1561 ctgggcgttg acctcttccc gaagattgac ttcccgacca tcaccatcaa cgtcgtcaac
     1621 cccggcgcca gcccgcgcga gatagagacc gagataaccg agcaggtaga ggccgccgtc
     1681 aacaccatca gcggcattga cgagctgcgc tcgacctcgg tcgaaggcgt gagccaggtc
     1741 ttcgtgcagt tcctgctcga caaggacgtg gacgtggccg cgcaggagat tcgcgacaag
     1801 gtcaacctca tacgcggcga cctgcccgag acggccgaag accccgtcat acagaagctc
     1861 gacacggacg ccgccccgat tctgcgcatc gccgtctcgg cgcagaagtc cctgcgcgaa
     1921 gtcaccgaca tcgccgacaa ggagatcaag gagcgcatcg agtccatcaa cggcgtaggc
     1981 caggtgcaga taatcggcgg cgccagccgg gagattcacg tctgggttga cccggacaag
     2041 atgcgcgcct tcaacgtcac ggtgccggaa gtcgtcgcgg ccgtgcgcgc gcagaacatg
     2101 gaagtgccgg gcgggcgcgt tgacgaaggc gcgcgcgagc tgaccgtccg cacgatgggg
     2161 cgcatcacca acccggccga cttcaaccac gtcgccgtcg gcaaccgggg cggctacgcc
     2221 gtgaaaatct ccgacatcgg gtacgtcgag gacggcacgg aggagcagcg aacctcctcc
     2281 cggctgaacg ggcagccggc cgtcacgctc gtcgtctcga agcagtcggg gcaga
//
LOCUS       DASPKR010000576         4026 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1120607, whole genome shotgun sequence.
ACCESSION   DASPKR010000576 DASPKR010000000
VERSION     DASPKR010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4026)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4026
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1120607"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2157
                     /locus_tag="VD968_15535"
     CDS             <1..2157
                     /locus_tag="VD968_15535"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HYE15855.1"
                     /translation="GTFGAAVNFTTGNVPFSVVAADLDGDGKTDLATADRPNSVSVLL
                     NGCASTCGGAGFAPASNFDVGDGPLSVAVGDFNRDGRADLATANNGSDDVSVLLGNGA
                     GGFATATNFGVGAGLTSVAVGDFNGDGKPDLATANYGSYKVSVLIGNGDGTFGPKADY
                     GVGAAPRSVAVGDFNRDGRADLATANELSDNVSVLLGNGAGGFATATNFDVGVIPTSV
                     AVGDFNRDGKPDIASANLESDNVSVLLGDGAGGFGPKADFVVGVSPLSVTVGDFNRDG
                     KPDLATANPSSADVSVLLGNGAGGFATATSFVVGDAPQSVTVGDFNNDGNPDLASANH
                     YANNVSVLLGDGAGGFATKTDFAAGGGPASVAVGDFNRDGKTDITSANQGNSVSVLLN
                     NCLPSADLHLTVTDSPDPALVGSVLSYTVNARNRGPINATGAKVIATLPSSLAFVSAS
                     PGCAHTGGASGGIVTCTVGDLAIGVTTPDFTITAQALSAGDIANLIEVSGNEFDDFLS
                     NNRRAASTRVNTLRRLSFDTDSTTGGCQTPLARTATVLLTGAAPAGGATVLLESSGPS
                     AASVPSSVSVSPGESSATFDITPGAVAAVTPVTITATLQTALATDPQLTAPFTVNPIR
                     VQSLALGQGSVQGGTPAANNVVTLACAPAANTPVALSSDKPGVASVPSGFEVPAGSAS
                     QGFTITTYPVTGSNKKVAIRAALGGRAVTQALTVSP"
     gene            2472..3236
                     /locus_tag="VD968_15540"
     CDS             2472..3236
                     /locus_tag="VD968_15540"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HYE15856.1"
                     /translation="MARAALAEPYRLAVERHAIGLRRLPPQLDGLKIVHLSDIHHSPF
                     TSRAQIERAVEAANALQPDIVALTGDYISHEREYIEPCAEMLGRLRARRGVFACLGNH
                     DNWVDAPLITDLFRAEGISVLVNEGFRFEDRGASFWLAGVDDTMVGLEDLPLALAGSR
                     SDEMKLLLAHNPVILRRAARAGVDLVLSGHTHGGQVAWRSEASPSGRVRRRILRGLGR
                     RGETQIYVTRGLGTVVLPVRYGCLPEVSLLTLRRAE"
     gene            3308..3922
                     /locus_tag="VD968_15545"
     CDS             3308..3922
                     /locus_tag="VD968_15545"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HYE15857.1"
                     /translation="MASKVVTVPNLLTVVRMALIPVFVGALYYQRFGWALAVFVAAGL
                     TDGLDGLFARRFNQYSQLGQILDPIADKLLLVTSFVTLSMPSVMEPSALVQPHPRHLP
                     IPFWVTAAVISRDIFIIVGAAAINVVTGFRGFRPSRLGKVNTVVQIGAIVLVLVAAVF
                     PPLRGYLPTVYTTVFSFAVISGVHYVFWASKLLSEDRQARETAQ"
BASE COUNT          624 a         1473 c         1253 g          676 t
ORIGIN      
        1 ggcactttcg gcgccgccgt caacttcacg acgggcaacg tccccttctc ggtcgtcgcg
       61 gccgacctcg acggagacgg caagacagac ctggcaacgg ccgacaggcc caacagcgtc
      121 tccgtcctgc tcaacggctg cgcgagcacg tgcggcggcg cgggcttcgc gccggcgtcg
      181 aacttcgacg tcggtgatgg ccctctctcc gtcgccgtcg gggacttcaa ccgcgacggg
      241 cgtgcggacc tggcgacggc gaacaacggc tccgacgacg tctccgtgct cctgggcaac
      301 ggcgcgggcg gcttcgccac ggcgacgaac ttcggcgtcg gagccggcct tacttccgtc
      361 gcggtcggag acttcaacgg cgacggtaag cccgacctgg cgacggcgaa ctacggctcc
      421 tacaaagtct ccgtgctgat aggtaacggc gacgggactt tcggccctaa ggcagactac
      481 ggcgtcggag ccgctcctcg ctccgtcgcc gtcggcgact ttaaccgcga cgggcgtgcg
      541 gacctggcga cggcgaacga actctccgac aacgtctccg tgcttctggg caacggcgcg
      601 ggcggcttcg ccacggcgac gaacttcgac gtcggagtca ttcctacttc cgtcgcggtc
      661 ggcgacttca accgcgacgg caagcccgac atcgcgtcgg cgaacctaga gtccgacaac
      721 gtctcggtcc tactcggcga cggggcaggc ggcttcggcc ccaaggcaga cttcgtcgtc
      781 ggagtctccc ctctttccgt cactgtcggg gacttcaacc gcgacggcaa gcccgacctg
      841 gctacggcga accccagctc cgccgacgtc tccgtgcttc tgggcaacgg cgcgggcggc
      901 ttcgccacgg cgacgagctt cgtcgtcggc gatgcccctc aatccgtcac ggtcggggac
      961 ttcaacaatg acggcaatcc cgacctcgcg tcggcgaacc attacgccaa caacgtctct
     1021 gttctactcg gcgacggcgc gggcggcttc gccacgaaga ccgacttcgc cgcgggcggt
     1081 ggccccgcgt cagtagcagt aggcgacttc aaccgcgacg gcaagacgga catcacgtcg
     1141 gcgaaccaag gcaacagcgt ctcagtgctg ctcaacaact gcctgccctc ggcggacctc
     1201 cacctgaccg tcaccgactc gcccgacccc gccctcgtcg gcagcgtgtt aagctacacc
     1261 gtcaacgcca ggaaccgcgg ccccataaac gccacgggcg ccaaagtcat cgccacgctg
     1321 ccctcctcgc tcgccttcgt ctccgcctcc ccgggctgcg cgcacacggg cggggcttcg
     1381 ggcggcatcg tcacctgcac cgtcggcgac ctcgccatcg gcgtcaccac gcccgacttc
     1441 acgatcaccg cccaagccct ctcggccggt gacatcgcca acctcatcga ggtctccggc
     1501 aacgagttcg acgacttcct ctcgaacaac cgccgggccg cctcgacgcg cgtcaacacc
     1561 ctgcgccggc tatcgtttga caccgatagc acgacgggcg gctgccagac gccgcttgcg
     1621 cgcaccgcca cggtgctact gacaggcgcg gctcccgccg ggggcgccac cgtgctcctt
     1681 gagagcagcg gcccgtcggc ggcctcggtg ccttcgagcg tgagcgtctc gcccggggag
     1741 tcgagcgcca ccttcgacat aacgcccggc gcggtggcgg ccgtcacgcc ggtgacgatc
     1801 acggcgacgc ttcaaacggc gcttgccacc gacccgcaac tgacggcccc cttcacggtc
     1861 aaccccatcc gggttcagtc gctcgcgctc gggcagggga gcgtgcaggg cggcaccccg
     1921 gccgcgaaca acgtggtgac tttggcgtgc gctcccgccg ctaacacgcc ggtcgcgctc
     1981 tctagcgaca agccgggtgt ggcttcggtg ccttccgggt tcgaggtgcc tgcggggagc
     2041 gcgtcgcagg gcttcacgat aacgacctac cccgtgacgg gctcgaacaa gaaggtggcg
     2101 atacgtgcgg cgctgggcgg cagggccgtg acgcaggccc tgaccgtctc gccttagccg
     2161 caagggcgcc gccgcctagg agggcgggcg ggaaggttgc aacccggcga catcccggtt
     2221 gtttttcccg cccgcccttt tgccgtcttg cgcccggcgg ccgatctcac tataattcgc
     2281 cgtcttttgc gggaagcggg ccgtgccgag cttagggaca aggggccgag cggcgcctcg
     2341 ctgattttcg tagccttcct tcaggaaaac ggaaaatgac ggagcttacc ggttggagag
     2401 aaaggcgacg tgtcgccgca cgcctgcggc ggcctactcc ccttcgctca ctcgccgccg
     2461 ggctggcgca gttggcgcgc gcggccctgg ccgagcctta ccgcctcgcc gtcgagcgcc
     2521 acgccatcgg cctccggcgc ctgccgccgc agctcgacgg cctgaagatc gtccacctct
     2581 cggacataca ccacagcccc ttcaccagcc gcgcgcagat agagcgcgcg gtcgaggccg
     2641 ccaacgccct tcagcccgac atcgtcgcgc tcacgggcga ctacatctcg cacgagcgcg
     2701 agtacataga gccctgcgcc gagatgctcg gccggctccg tgcgcgccgg ggcgtcttcg
     2761 cgtgcctggg caaccacgac aactgggttg acgcgccgct catcactgac ctcttccgcg
     2821 ccgagggcat aagcgtcctc gtgaatgagg gcttccgctt cgaagaccgc ggcgcctcct
     2881 tctggctggc gggcgtggac gacacgatgg tggggctgga agatttgccg ctcgccctcg
     2941 ccggctcgcg ctcggacgag atgaagctgc tgctcgcgca caaccccgta atactgcgcc
     3001 gcgccgcccg cgccggcgtt gacctcgtgc tctccggcca cacgcacggc gggcaggtcg
     3061 catggcgctc cgaagcgtcg ccctcgggcc gcgtgcgacg gcgcattctg cgcggcctgg
     3121 ggcggcgcgg cgagacccaa atctacgtca cgcggggctt gggcacggtc gtcctgcccg
     3181 tgcgctacgg ctgccttccc gaggtctcgc tgctgacgct gcgccgggcg gagtagagaa
     3241 gaagtgacga gtgacaagtg acgagcgggt aagctcttac tcgtcactcg tcacccgtca
     3301 cttttttatg gcttctaagg tcgtcaccgt cccgaacctt ttgaccgtgg tgcgcatggc
     3361 gctcatcccg gtcttcgtgg gcgcgctgta ctaccagagg ttcggctggg cgctggccgt
     3421 cttcgtcgcg gcgggcctga ccgacggcct ggacggcctc ttcgcccgcc gtttcaacca
     3481 gtattcccag ctcggccaga ttctcgaccc catcgccgac aaactcctgc tagtcacctc
     3541 cttcgtcacg ctctcgatgc cttccgtgat ggagccctcg gcgctcgtcc agccccaccc
     3601 gcgccacctc cccatcccct tctgggtgac ggcggccgtc atcagccgcg acatcttcat
     3661 aatcgtgggc gcggcggcca taaacgtcgt cacgggcttc cggggcttcc ggccctcccg
     3721 gctcggcaaa gtcaacacgg tcgtgcagat aggcgcaatc gtgctagtcc tcgtcgcggc
     3781 cgtcttcccg ccgttgcggg gctacctgcc caccgtctat accaccgtct tctctttcgc
     3841 cgtaatctcc ggcgtccact acgtcttctg ggcctcgaaa ctcctcagtg aagaccgaca
     3901 ggcgcgcgag accgcgcagt aaaacctcta aattgctgaa gggcaagagt ttgggccggg
     3961 caactctggc cggggccgct gctactaaaa gttgacaacg gttgactcaa atattatatt
     4021 agcgtc
//
LOCUS       DASPKR010000577         2441 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1120638, whole genome shotgun sequence.
ACCESSION   DASPKR010000577 DASPKR010000000
VERSION     DASPKR010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2441)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2441
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1120638"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(288..>2441)
                     /locus_tag="VD968_15550"
     CDS             complement(288..>2441)
                     /locus_tag="VD968_15550"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HYE15858.1"
                     /translation="GTFGAAVNFTTGNVPFSVVAADLDGDGKTDLATADRPNSVSVLL
                     NGCQSACGDVDFAAASDLGAGDAPTSVAVGDFNRDGKADLAAANRDAASISVLLGDGA
                     GGFGPKTDFPAGSPWAVTVGDFNGDGRADLAAANFGHDNVSILLGDGAGAFGPKTDFP
                     VGSAPDAITSGDFNRDGRLDLATANRTDSTVSVLLGDGAGAFSPKTDFGVGSAPASVV
                     TADFNSDGHTDLATANLSSDNVSVLLGTKTGAFDGAINFGVSFGPSSVTVGDFNGDGE
                     ADIAAANFSSQNVSILLGLGDGTFSPKADFAAGSFPYSVAAGDFDDDGRLDLAVANSG
                     STNVSLLLGNGDGTFDPKSDFGAGTGPIFVTTGDFNRDGKADLAAANFYSDDVSVLLN
                     DCQPSADLHLTVTDSPDPALIGGQITYTVAVRDRGPIDATGVGVSAALPSTLAFVSAS
                     LGCTHTGEPAGGTVTCDVGDLPRGAANQETLTIVTQALAAGVSTTTIEVAGNDFDDFL
                     SNNKRLVTTTAVTLNRVTLSAADAIGGCSGSQPTGTVKLSGQAPSGGATVLLSSSAPS
                     ALEVPASVQVAGGQTTATFNLTPKAVAALTAVTVTATLQTALTPDPQKAAAFSVRPIR
                     VQSLALGQGSVQGGTQVTNNVVTLTCAAAADTAVALTSDNPAVASVPSGFEVPAGSAS
                     NSFTITTGAVATTRRVAIRAALNGKTVTQVLTVTP"
BASE COUNT          398 a          786 c          861 g          396 t
ORIGIN      
        1 gaaggggagt aggccgccgc aggcgtgcgg cgacacgtcg cctttctctc caaccggtaa
       61 gctccgtcat tttccgtttt cctgaaggaa ggctacgaaa atcagcgagg cgccgctcgg
      121 ccctttgtcc ctaagctcgg cacggcccgc ttccgcaaaa gacggcgaat tatagtgaga
      181 tcggccgccg ggcgcaagac ggcaaaaggg cgggcgggaa aaacaaccgg gatgtcgccg
      241 ggttgcaatc ttcccgcccg ccctccgggg cagccgcgcc cccgcggcta aggcgtgacg
      301 gtcaagacct gcgtcacggt cttcccgttg agcgccgccc gtatagccac gcgcctcgtc
      361 gtcgccacag cgcccgtcgt gatagtgaag ctgttagagg cgctccccgc cggcacctcg
      421 aagcccgatg gcaccgaggc caccgccgga ttgtcgctcg tgagcgccac ggccgtgtcg
      481 gccgccgccg cgcacgtcag cgtcacgacg ttgttcgtga cctgcgtgcc gccctgcacg
      541 ctcccctgcc cgagcgccag cgactgcaca cgtatcggcc tcaccgagaa ggccgccgcc
      601 ttctgcgggt cgggcgtaag cgccgtttga agcgtcgccg tgacggtgac ggccgttaag
      661 gccgcgaccg ccttcggcgt gaggttgaag gtcgcggtcg tctgcccgcc cgccacctgc
      721 acgctcgcag gcacttcaag cgccgacggg gcgctgctgg agagcagcac ggtggcgccg
      781 cccgagggcg cctgcccgct cagcttgacg gtacctgtgg gctgcgagcc ggaacagccg
      841 cctatggcgt cggcggccga aagggtcacc cggttgagcg tgacggcggt ggtcgtgacg
      901 aggcgtttgt tgttagagag gaagtcgtcg aagtcgttgc cggcgacctc tatggtggtc
      961 gtggagacgc cggccgctag cgcctgcgtc acgatggtca aggtctcctg gttcgcggcg
     1021 ccgcgcggca ggtcgcccac gtcgcaggtg actgtgccgc ccgccggctc gccggtgtgc
     1081 gtgcagccca gggaggcaga gacgaaggcg agcgtggagg gcagcgcggc cgagactccg
     1141 actcccgtgg cgtctatggg gccgcggtcc ctgacggcca ccgtgtaggt gatctgcccg
     1201 ccgatgaggg cggggtcggg cgagtccgtg acggtcaggt gaaggtctgc ggagggctgg
     1261 cagtcgttga gcaggacgga gacgtcgtcg gagtaaaagt tcgccgccgc gaggtctgcc
     1321 ttgccgtcac ggttgaagtc gccggtcgtc acgaagatag ggccagtgcc agccccgaag
     1381 tcggacttcg ggtcgaaggt gccatcgccg ttaccaagca gcaacgagac gttggtggaa
     1441 ccgctgtttg ctaccgcgag gtcgagcctg ccatcgtcat cgaagtctcc ggccgcgacg
     1501 gaataaggga aactgccggc ggcgaagtct gccttcgggc tgaaggttcc gtcgcctaac
     1561 ccgagcagaa tagagacatt ctgtgagctg aaattcgccg ccgcgatgtc cgcctcaccg
     1621 tcgccgttga agtctccgac ggtgacggaa gaagggccaa aactcacgcc gaagttgatc
     1681 gctccgtcga aggctcccgt cttagtgccg agaagcacag acacgttgtc ggagcttagg
     1741 ttcgccgtcg cgaggtctgt atgaccgtcg ctgttgaagt ctgcggtcac gacggaagca
     1801 ggagcactgc caacgccgaa gtcggtctta gggctgaaag cgcccgcgcc atcgccgagc
     1861 agcaccgaga ccgtggagtc ggtgcggttc gccgtcgcga ggtcaagccg gccgtcgcgg
     1921 ttgaagtcgc cgctcgtaat ggcgtcagga gcactgccta cagggaagtc agtcttgggg
     1981 ccgaaggcgc ccgccccgtc gccgagcaga atcgagacgt tgtcgtggcc gaagttcgcc
     2041 gccgcgaggt ctgcgcgacc gtcgccgttg aagtctccga ccgtgacagc ccaggggcta
     2101 ccagcgggga agtctgtctt cgggccgaag cccccggccc cgtcgccgag cagaacagag
     2161 atggaggcgg cgtcgcggtt cgccgccgcg aggtctgcct tgccgtcgcg gttgaagtcg
     2221 ccgacggcga cggacgtagg agcatcgccc gcgcctaagt ccgacgccgc cgcgaagtcc
     2281 acgtcgccgc acgcgctctg gcagccgttg agcaggacgg agacgctgtt gggcctgtcg
     2341 gccgttgcca ggtctgtctt gccgtctccg tcgaggtcgg ccgcgacgac cgagaagggg
     2401 acgttgcccg tcgtgaagtt gacggcggcg ccgaaagtgc c
//
LOCUS       DASPKR010000578         5556 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_607240, whole genome shotgun sequence.
ACCESSION   DASPKR010000578 DASPKR010000000
VERSION     DASPKR010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5556)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5556
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_607240"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1565
                     /locus_tag="VD968_15555"
     CDS             <1..1565
                     /locus_tag="VD968_15555"
                     /EC_number="7.5.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HYE15859.1"
                     /translation="TSMKEEPLLRMEGIRKVFSGVVALDGVDFRLERGEVHALVGENG
                     AGKSTLIKVMTGAYRRDGGRVLLEGREVNFNSPEDAQAEGVVAVYQEVNLLMFRTVAE
                     NIFLGREPRRFGLIDWKRMNDEAAQILGRLGLDIDPRATLGRLNIALRQMVAIARGVS
                     LGAKVVVLDEPTSSLTEHEVAILYDVIRRMKAEGTGVAYISHRFDELYTVCDTVTVLR
                     DGKFVATRPLAGLEKIDLVCLMLGKQREELQRKGATAFGEHDKKAGGAAPLLRAENLT
                     RGRKLNRVTVEAGKGEIVGMAGLLGSGRTETARAIFGADSVDEGAVYLEGRPLKLGGP
                     SDAIEAGVAFLSEDRKAEGIIPELSVRENLTLAALPELSKMGIVSRAEQNEVVERFMK
                     RLGIKASSAEQKIRELSGGNQQKVLLARWLCKNPKFLILDEPTRGIDIGAKGEIQSLI
                     NELAESGLGVLMISSELEELVEGSSRVVVMRDGELVAELRPPAISQDNIIRAMAEGSA
                     AAATEGEAQAGE"
     gene            1617..2594
                     /locus_tag="VD968_15560"
     CDS             1617..2594
                     /locus_tag="VD968_15560"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE15860.1"
                     /translation="MADAANVNRAGGARAAGRAGLADYAPTYGALAALILLLVINSIF
                     TTNFFDFNNFRNILLQVAPTVLVAVGMTMVIATGGIDLSVGSVMAIASAVAAASLGRG
                     ALVAVLLGLAAAFAVGAFNGVLISGFRIQPIIVTLALLISGRGVAQVMSDGRLVPFSD
                     PSFEFIGRGVVAGVPAQVIVMALVVAAAIFVMRMTTFGRYVVAVGGNEAAARLAGVHV
                     HRTKIAVYAVSGLLAGLAGLIETARLGASDAQKVGLNIELDAIAATVVGGTPLTGGRA
                     TVVGTLIGALIMQIISTGMIMNDIKPAWSFVVKAAIIVVAVYLQRPKAA"
     gene            2724..4325
                     /locus_tag="VD968_15565"
     CDS             2724..4325
                     /locus_tag="VD968_15565"
                     /inference="COORDINATES: protein motif:HMM:NF016497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 43 glycosylhydrolase"
                     /protein_id="HYE15861.1"
                     /translation="MFCFIPAAAQKATYTNPVIAGDFPDPSVIRVGEEYWATTTTGGW
                     APHFPLMRSRDLVNWQLVGYVFEKRPAWARADFWAPEIIHDRGRFFVYYTARRDEGPK
                     KTGTLCVAVATAPAPAGPYTDHGPLACEIPERKNVGSIDAFFVRDEAGDPYLVWKADG
                     NDAEPDAPTSIYAQKLTEDGLKLVGKRREILRNTEPWEKHVTEGSFILRRGEYFYHFY
                     SGNACCGRGCDYALGVARARKLLGPWEKHPRNPIVDDNADWQCPGHGSIVSTPDGRDF
                     LLYHSYRRAGWTFNVGREALLDEVTWGPDGWPAVNSGRGPSSVAPSPAGVAEEDDYTE
                     VLDEFDSDRLGPAWQWPMSIDQLARAERGEGGHLNLSPVSLMRSDDITGAVIARQTLS
                     GDYTVEAAVNTRGTAQAARAGLAAYSWRDAAVGIAYGRGQVVVWRREGKEQKTVAEAA
                     APVSPQVVLRMTATGGESFRFAYSADGKEWKELGGTVAGSHVEGARVALTAGGGAARF
                     DWVRIKAEGSRQKAEGGLPSSRGER"
     gene            4322..5326
                     /locus_tag="VD968_15570"
     CDS             4322..5326
                     /locus_tag="VD968_15570"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE15862.1"
                     /translation="MSQATTVDASESVRGRVTRAKVASFVQRQGALLALLLVGVFGFA
                     RYEHFLTEENLTNVLRQNSMLGLVALGMTFVILTGGIDLSVGSLVAVAGVVSASLSGQ
                     GLLAALLAGVALSTALGLTNGLVIAKARIQPFIVTLAMMIAARGIALIYTDEKSVSVA
                     AGAGGFRELGRARLDLGFVSLPYLVLILVAAYAVGWLVLNYTRFGRHVFSLGDNEEAA
                     RLMGLNVGRVTVGVYTLSGALAGLAGVMLASRLGAGQPVAAVGWELDAIAAVVVGGTL
                     LTGGQGGVGSTLVGVLLLSLILNIFNLEGWISPWWQLVLRGVILLAVVVIQNRLSAKK
                     "
     gene            5376..>5556
                     /locus_tag="VD968_15575"
     CDS             5376..>5556
                     /locus_tag="VD968_15575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15863.1"
                     /translation="MGRYSESEIGEFVRRVLDEGFCVLPEHFPRAKMDAWRAAFGPLL
                     ARHIEREGHLRNRGPA"
BASE COUNT          914 a         1789 c         1957 g          896 t
ORIGIN      
        1 tgacctctat gaaagaagag ccgctcctcc gcatggaggg aatacgcaaa gtcttctcgg
       61 gcgtcgtggc gctcgacggc gttgacttcc gacttgagcg cggcgaggtt cacgcgctcg
      121 tgggcgagaa cggcgcgggg aagtcaacgc tgataaaggt gatgacgggc gcgtaccgcc
      181 gcgacggcgg gcgcgtgcta ctggaaggcc gcgaggtcaa cttcaactcg ccggaggacg
      241 cgcaggccga gggcgtcgtc gccgtctatc aggaggtcaa cctccttatg ttccgcaccg
      301 tggccgagaa catcttcctc ggccgcgagc cgcgccgctt cggcctgatc gactggaaac
      361 ggatgaacga cgaggcggca cagatactcg gccgcctcgg gctcgacatt gacccgcgcg
      421 cgacgctcgg gcgcctcaac atcgcgctcc ggcagatggt cgcaatagcg cgcggcgtct
      481 cgctcggcgc caaagtcgtc gtcctcgacg agccgaccag ctctctcaca gagcacgagg
      541 tcgcgatact ctacgacgtg atacggcgca tgaaggccga aggcaccggc gtcgcctata
      601 tcagccaccg cttcgacgag ctttacaccg tctgcgacac cgtcacagtc ttgcgcgacg
      661 gaaagttcgt cgccacccgg ccgctcgcgg ggcttgagaa gattgacctg gtctgcctca
      721 tgctcggcaa gcagcgcgag gagttgcagc gaaagggcgc gacggccttc ggcgagcacg
      781 acaagaaggc gggcggggcg gcgccgctgc tgcgcgccga gaacctcacg cgcgggcgca
      841 aactcaaccg cgtcacggtc gaggccggca agggcgagat agtcggcatg gcgggcctgc
      901 tcggctcggg ccgaacggag acggcgcgcg caatattcgg cgccgactcg gtggacgagg
      961 gcgctgtcta tctcgaaggc cgaccgctta aactcggcgg accctcggac gccatcgagg
     1021 ctggcgtcgc cttcctctcc gaagaccgaa aggccgaggg catcatccca gagctctccg
     1081 tgcgcgagaa cctgacgctc gcggcgctgc ccgagcttag caagatgggg atagtctcgc
     1141 gcgccgagca gaacgaggtg gtcgagcgct tcatgaagcg tctggggata aaggcttcga
     1201 gcgccgagca gaagatacgc gaactttcgg gcggcaacca gcagaaggtg ctgctcgcgc
     1261 gctggctctg caagaacccg aagttcctca tactcgacga gccgacgcgc ggcatagaca
     1321 tcggcgcgaa gggcgaaatc cagtcgctca taaacgagct ggccgagtcg ggcctcgggg
     1381 tgcttatgat ctcttcggag cttgaggaac tggtcgaggg cagctcgcgc gtagtcgtca
     1441 tgcgcgacgg cgagctggta gcggagcttc ggccgcccgc aatctcgcag gacaacatca
     1501 tccgcgcgat ggccgagggc agcgccgccg cagcgacgga aggcgaggcg caggccggcg
     1561 agtagcgggc ggccccggag gttcgttgga gagaaaactc gcaggagcgt gaagctatgg
     1621 ctgacgcggc aaacgtgaat cgggcgggcg gtgcgagggc ggcggggcgc gcggggctgg
     1681 ccgactacgc gccgacctac ggggcgctcg ccgcgctcat actcctcctc gtcatcaact
     1741 cgatcttcac cacgaacttt ttcgacttca acaatttcag aaacatactc ctacaggtcg
     1801 cacccaccgt gctcgtcgcc gtcgggatga cgatggtgat agcgacgggc ggcatagacc
     1861 tatcggtcgg ctcggtgatg gcgattgcgt cggccgtggc ggcggcgtca ctcggccggg
     1921 gcgcgctcgt cgccgtgctg ctcggcctcg cggcggcctt cgccgtcggc gccttcaacg
     1981 gcgtgctcat ctcgggcttc cgcatccagc caatcatcgt aacgctcgcg ctgctcatct
     2041 cgggccgggg cgtcgcgcag gtgatgagcg acgggaggct cgtccccttc agcgacccct
     2101 cgttcgagtt catagggcgc ggcgtcgtcg ccggcgtccc cgcgcaggtc atcgtgatgg
     2161 cgctcgtcgt ggcggccgcc atcttcgtga tgaggatgac cacgttcggg cgttacgtcg
     2221 tggccgtggg cggcaacgag gcggccgcgc ggctcgcggg ggttcacgtt caccggacga
     2281 agatagccgt gtacgcggtg agcggtctgc tcgccggcct cgcggggctc atcgagacgg
     2341 cgcggctcgg cgcgagcgac gcgcagaagg tcggcctcaa cattgagctc gacgccatcg
     2401 ctgcgaccgt cgtgggcggc acgccgctga cgggcgggcg cgcgacagtc gtcggcaccc
     2461 tcatcggcgc tctcatcatg cagataatct cgacggggat gatcatgaac gacatcaagc
     2521 ccgcgtggtc gttcgtcgtc aaggcggcca tcatcgtcgt cgccgtctat ctgcaaaggc
     2581 cgaaggcggc gtgaggctgg gttgaatcta tggcgcgtcg gggctcacag caaaggcgca
     2641 gagggcgccg aggaagcgcg gaggaaaaaa ctctgcgacc tctgcgcctc cgcgccctct
     2701 gcgttaaatc ctgcctcgct ctcttgttct gcttcatccc ggcggcggcg cagaaggcga
     2761 cttacacgaa ccccgtcatc gcgggcgact tccctgaccc ttccgtgatt cgcgtgggcg
     2821 aggagtactg ggcgacgacg acgacgggcg gctgggcgcc gcacttcccg ctcatgcgtt
     2881 cgcgcgacct cgtgaactgg cagctcgtgg gctacgtctt cgagaagcgc cccgcgtggg
     2941 cgagggcaga cttctgggcg cccgagataa ttcatgaccg cggccgcttc ttcgtctatt
     3001 acaccgcccg gcgcgacgag gggccgaaga agaccgggac gctctgcgtg gccgtggcga
     3061 cggcgcccgc gcccgccggc ccttacacgg atcacggccc gctcgcctgc gagattcccg
     3121 agcgaaagaa cgtgggctcc atagacgcct tcttcgtgcg cgacgaggcc ggcgacccct
     3181 acctcgtctg gaaggccgac ggcaacgacg cagagcccga cgcgcccacc tccatctacg
     3241 cgcagaagct cacggaggac gggctcaagc tcgtcggcaa gcgcagggag attctccgca
     3301 acacagagcc gtgggagaag cacgtcaccg aaggctcctt cattctgcgg cgcggcgaat
     3361 acttctacca cttctattcg gggaacgcct gctgcggccg gggctgtgac tacgcgctcg
     3421 gagtagcgcg cgcgcgcaag ctgctcggcc cgtgggagaa gcacccgcga aaccccatcg
     3481 ttgacgacaa cgccgactgg caatgccccg gccacggcag catcgtctcg acgccggacg
     3541 ggcgcgactt ccttctttat cattcgtacc ggcgcgcggg ctggactttc aacgtggggc
     3601 gcgaggcctt gctcgacgag gtgacgtggg ggccggacgg ctggcccgcc gtcaactcgg
     3661 ggcgcggccc ttcgagcgtc gccccgtcgc ccgcgggcgt ggcggaagag gacgactaca
     3721 cggaagtcct cgacgagttc gactccgaca ggctcggccc cgcgtggcag tggccgatgt
     3781 cgattgacca gttggcgcgc gcagagaggg gcgaaggcgg ccacctgaac ctctcgcctg
     3841 tgtcgctcat gcgtagcgac gacatcaccg gcgccgtcat cgcccgccag accctttcgg
     3901 gcgactacac ggtggaagcg gccgtaaaca cccgcggcac ggcgcaggcg gcgcgcgcgg
     3961 ggctcgcggc ctacagttgg cgcgacgcgg ccgtaggtat cgcctacggc cgcggacagg
     4021 tagtcgtctg gcggcgcgag ggtaaggagc agaagacggt cgcggaggct gcggcgcccg
     4081 tctcgccgca ggtcgtgctc cgcatgacgg cgacgggcgg agagtctttc cgcttcgcct
     4141 acagcgccga cggcaaagaa tggaaggagc tgggcggcac ggtcgccggc agccacgtag
     4201 agggcgcgcg cgtcgcgctc acggccgggg gcggcgccgc gcgcttcgac tgggtgagga
     4261 taaaggcgga aggcagcagg cagaaagcag aaggcggact gccttcttcc cgaggtgagc
     4321 gatgagtcag gcgacaactg ttgacgcttc ggagtcggtg cgcgggcgcg tcacgcgcgc
     4381 gaaggttgcc tcgttcgttc agcggcaggg ggcgctgttg gcgctgctgc tggtcggcgt
     4441 gttcggattc gcgcgctacg agcacttcct gaccgaggag aacctgacga acgtgctgcg
     4501 gcagaacagc atgctcgggc tggtggcgct cggcatgacg ttcgtgatcc tgacgggcgg
     4561 gatagacctc tccgtcggct cgctcgtcgc cgtggcgggc gtagtctccg cctcgctctc
     4621 ggggcagggg ctcctggccg cgctcctcgc cggcgtcgcc ctcagcaccg cgctcggcct
     4681 cacgaacggg ctcgtgatag cgaaggcgcg catacagccc ttcatagtca cgctggcgat
     4741 gatgatagcg gcgcgaggca tcgccttgat ttacacggac gagaagtccg tgagcgtagc
     4801 ggccggcgcg ggcgggttcc gagagctggg gcgcgcgcgg ctcgacctcg ggttcgtctc
     4861 cctcccttac ctcgtcctga tactcgtcgc ggcctacgcc gtcggctggc tcgtgctcaa
     4921 ctacacgcgc ttcggccggc acgtcttctc gctcggcgac aacgaggagg cggcgcggct
     4981 gatgggccta aacgtcgggc gcgtgacggt gggcgtctat acccttagtg gtgcgctcgc
     5041 cggtttggcg ggcgtaatgt tggcgtcccg cctgggcgca ggccagccgg tcgcggccgt
     5101 agggtgggag ctcgacgcaa tcgcggccgt ggtcgtcggg gggacgctcc tgacgggcgg
     5161 gcagggcgga gtgggctcga cgctcgtcgg cgtgctgctc ttgagtctca ttctcaacat
     5221 cttcaacctc gaaggctgga taagcccctg gtggcaactc gtccttcgtg gcgtcatact
     5281 gctcgcggtc gtcgtgattc agaaccgcct gagcgcgaag aaatgaaagg gtgaggtcag
     5341 gaagtcaaaa cacttcccgc ttctcggcta aggtcatggg gagatacagc gagagtgaga
     5401 taggcgagtt cgtgcggcgt gtgctcgatg agggcttctg cgtcctgccc gagcacttcc
     5461 cgcgcgcgaa gatggatgcc tggcgcgcgg ccttcgggcc gcttctggcg cgccacatcg
     5521 agcgcgaggg gcatctgcgc aaccgcggcc cggcgc
//
LOCUS       DASPKR010000579         4270 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1121368, whole genome shotgun sequence.
ACCESSION   DASPKR010000579 DASPKR010000000
VERSION     DASPKR010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4270)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4270
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1121368"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1421
                     /locus_tag="VD968_15580"
     CDS             <1..1421
                     /locus_tag="VD968_15580"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:NF036799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HYE15864.1"
                     /translation="KALGLQTEASYRFERGTDYEGVRRAQDRCVALICELAGGTATED
                     ALDVHPRRLAPPHVRFRPRRVEALTGLAVTPEECARALSALGFTPAGGEGGNGHGGAA
                     PSAPGESMLLVAPTWRTDVSIEEDLVEEVARLTGYEKIKDSLPHSPVTGEYLPGDARR
                     RSARRALTAAGFNEAVNISFIGGENEGRFELIPGLRTAGKDDGEAFVKLSNPIIEGST
                     LMRPTLLAGLLESVRHNFNHGTRSVRLFETGRVFAAPGSGEGGRPNELEAFALVVTGE
                     ALEAGRATGREVDFLDAKGALEAAVGMMNVGELEFAPASVSHLREGQSARVSLGGEEI
                     GTLGRLSDETAALYKFRQPVFVAEVSMTALLSAPETPARYTPLPRFPSVVRDVSLLAE
                     RRVTYGEMRAAVLGLGLEHLRGVALVDVYEGAGLPEGKRSVTLRLDYRADDRTLRDEE
                     VDEAHARAVAALAERFGAQLRG"
     gene            1570..1851
                     /locus_tag="VD968_15585"
     CDS             1570..1851
                     /locus_tag="VD968_15585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15865.1"
                     /translation="MVGLTGLEKFSHLEDKIYRTIELTKTLRQEKEAIEREMASVRRE
                     LGALIDEKDRLESQVERLLAERDTIRMKVEAMLDAIAVLDPETAEVMRR"
     gene            1874..2233
                     /locus_tag="VD968_15590"
     CDS             1874..2233
                     /locus_tag="VD968_15590"
                     /inference="COORDINATES: protein motif:HMM:NF017016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HYE15866.1"
                     /translation="MSAIKNPAEGTPTIRVEIYNQTYNIRSDGDSDYVMGLAEFVDSR
                     MREISSGTLTVDSLKVAILAALHIADELHRLKRLHEQTDQQLASRSAECAEMLDRVLK
                     VRAAGEQAATQSNITFS"
     gene            2354..2543
                     /gene="ssrS"
                     /locus_tag="VD968_15595"
     ncRNA           2354..2543
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="VD968_15595"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(2637..3125)
                     /locus_tag="VD968_15600"
     CDS             complement(2637..3125)
                     /locus_tag="VD968_15600"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HYE15867.1"
                     /translation="MMQPIEADALFDEWHETAIRVRYAETDRMGVVYHANYLVWFEIG
                     RTEFCRARGFAYKDMEENDRAYLVVAESYCRYKAPARYDEELIVRTHITELRRRSVRF
                     GYEIIRAADGVIIAEGETGHVVTDPNGRVISMPDSYRSALSAPPLAPPPVAAGEPDDI
                     PE"
     gene            3240..>4270
                     /locus_tag="VD968_15605"
     CDS             3240..>4270
                     /locus_tag="VD968_15605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15868.1"
                     /translation="MSKQNRVRAGGWLALVACVALSSVGAAAAAQRTQRARKPAAAAA
                     VNPKTAAVRAATAEVLQETSEIRKLRVLRPVKSGAQTREEIERMLIRNLDENSSPEEL
                     RVSELALERLGMFPEDFRLREFLIKLLTEQVAGYYDPKKQHFYLADWIDLDGQKPVMA
                     HELTHALQDQHFNLRRFEKWPEHESDSELAAHALVEGDAMVLMTQYIMRSPMRQLAML
                     KSLVTGGAGSTAVFDAAPRVLRETLVFPYTQGGAWVGQVYNRGGWEAVSAAYSNLPKS
                     TEQILHPEKYFEGEAPQKVAPKDLSAALGKGWKLADHDVNGEWGYFLLVDEFLKAREV
                     SQKASAGWGG"
BASE COUNT          748 a         1414 c         1424 g          684 t
ORIGIN      
        1 cgaaggcgct ggggttgcag accgaggcgt cctaccgctt cgagcgcggc acggactacg
       61 agggcgtgcg ccgcgcgcag gacaggtgcg tcgcgctcat ctgcgagctg gcgggcggca
      121 ccgcgaccga ggacgcgctc gacgttcacc cgcgccgcct cgcccccccg cacgtccgct
      181 tcaggccgcg ccgcgtcgag gcgctcactg gcctcgccgt cacgcccgaa gagtgcgcgc
      241 gcgcactctc cgcgctcggc ttcacgcccg cgggcggcga gggcggtaac ggtcacggcg
      301 gcgccgcgcc gtctgcccca ggcgaaagta tgctcctcgt cgcgccgacc tggcgcacgg
      361 acgtttccat cgaggaggac ctggtcgagg aggtcgcgcg cctcaccggc tacgaaaaaa
      421 tcaaggattc gctaccacac tcgcccgtca ccggcgagta ccttccgggc gacgcgaggc
      481 ggcgctccgc acgccgcgcg ctcacggccg cgggcttcaa tgaagccgtg aacataagct
      541 tcatcggtgg ggagaacgag ggccgcttcg aactgatacc gggcctgcga acggccggga
      601 aggatgacgg cgaagccttc gtcaagctct cgaaccccat aatcgagggc tcgacgctca
      661 tgcggccgac gcttttggcg ggccttctcg aatcggttcg ccacaacttc aaccacggca
      721 cgcgcagcgt ccgcctgttc gagacgggcc gcgtcttcgc cgcgccgggc agcggggaag
      781 gggggcggcc gaacgagctt gaggcgttcg cgctcgtcgt cacgggcgag gcccttgagg
      841 cgggccgcgc cacgggccgc gaggttgact tcctcgacgc caaaggcgcg ctcgaagccg
      901 cggtcggcat gatgaacgtt ggcgagttgg agttcgcgcc cgcatcggtc tctcacctgc
      961 gcgaggggca gtcggcccga gtctcactcg gcggggagga gataggcacg ctcgggaggc
     1021 tctcggacga gacggccgcg ctctacaagt tccgccagcc cgtcttcgtg gccgaagtga
     1081 gcatgacggc gctgctgtcg gcgcccgaga cgcccgcgcg ctacacgccg ctcccgcgct
     1141 tcccctcggt cgtgcgcgac gtgtcgctgc tcgccgagcg gcgcgtcacc tacggcgaga
     1201 tgcgcgcggc cgtgctcggg ctcgggctcg agcacctgcg cggcgtcgcg ctcgttgacg
     1261 tgtacgaggg cgcagggctc ccggaaggga agcgctctgt cacgctgcgc ctcgattacc
     1321 gcgccgacga ccgcacgctg cgcgacgagg aagttgacga ggcgcacgcc cgcgccgtcg
     1381 ccgcactcgc cgaaagattc ggggcgcaac tgagaggcta gatgtcgggt gacgaatgcc
     1441 aggtgttaga aaaatctcct aactagcatc cggcatccga catctgacat ctggctcttg
     1501 cgctcgggcg cgtgaagtcg cataatcgct cggcagtttt gaaggccgct gtgatgttgg
     1561 agaatggcga tggtcggact gaccggactc gaaaagttct cacacctcga agacaaaatt
     1621 taccgcacca tcgagctgac caagacgctc aggcaggaga aggaggccat cgagcgcgag
     1681 atggcctcgg tgcgccgcga gctgggcgcg ctcattgacg agaaggacag gctcgagtcg
     1741 caggtcgagc gcctgctcgc cgagcgcgac accatccgca tgaaggtcga ggccatgctc
     1801 gacgcaatcg ccgtcctaga ccccgagacc gccgaggtga tgcgccggta ggcggcgcgg
     1861 agttcagccg aagatgagcg ccatcaagaa cccggccgag ggcacgccca ccatccgggt
     1921 cgaaatctac aaccagacct acaacatccg ctcggacggc gacagcgact acgtcatggg
     1981 gctcgcggag ttcgttgaca gccgcatgcg cgaaatctcc tccggcaccc tcaccgttga
     2041 ctcgctcaag gtcgcgatac tcgcggccct ccacatcgcc gacgaactgc accgcctcaa
     2101 gcgcctccac gagcagacag accagcaact cgcctcgcgc agtgccgagt gcgcggagat
     2161 gctggaccgc gtgctgaagg tgcgcgccgc gggcgagcag gcggccacgc agagcaacat
     2221 aaccttctcc tgagccctca gcgttcccca acaaaacggg gcggttttgt caagcgcgac
     2281 ggcgcccttt tcgcgctcgt tttccgggcg ggcgcgggcg cgactgtgct actatccgtc
     2341 ttggctgagg gagtcagttc tgcggggctc gtcaccgatt tacgatgatt gagccaacgc
     2401 cgtaaaaaag ggaggccgac gccgccagcc agtgtacagc ccctcaacgt agggactgcc
     2461 ggaggctgcg gcttcttaca taggccaccc acctgttagc gcaggttcaa ttgcggcttc
     2521 ggaacggcca acgcggttcc ccctccgcct caaaatatcc gtaaagccga atggccggcg
     2581 gtgagtatgc ccactcaccg ccggccattc gccgcttttt cggtcttctt acaggctcac
     2641 tcagggatgt cgtcgggctc cccggccgca accggcggcg gcgcgagcgg cggggcgctc
     2701 agcgccgagc ggtagctgtc cggcatcgag attacgcggc cgttcgggtc tgtgacgacg
     2761 tggcccgtct cgccctcggc tatgatcacg ccgtcggcgg cacgtattat ctcgtagccg
     2821 aagcggacgc tgcggcggcg aagctccgtt atgtgggtgc ggactataag ctcctcgtcg
     2881 taacgcgcgg gcgccttgta gcggcagtaa gactcggcca cgacgaggta ggcgcggtcg
     2941 ttctcctcca tgtccttgta tgcgaagccg cgcgcgcggc agaactccgt gcggccgatc
     3001 tcgaaccaga cgaggtagtt cgcgtggtac actacgccca tgcgatccgt ctcggcgtag
     3061 cggacgcgta tggccgtctc gtgccactcg tcgaagaggg cgtcggcctc tatgggttgc
     3121 atcatctgaa agctcaaagc ctctcgcccg ccgccgggtc gggctgccaa gttctggctt
     3181 ttggtcaagg tgttcgagag ccgttcggtt gagcggacta taaaagcgaa gggttcgtga
     3241 tgtcaaagca aaacagggtt cgcgcggggg gctggctggc gcttgtggcg tgcgtcgccc
     3301 tatcttccgt aggggccgcg gctgctgcgc agaggacgca gagggcgagg aagccggccg
     3361 cggccgcggc ggtcaacccg aagactgcgg ccgttcgcgc cgcgacggcc gaggtgttgc
     3421 aggagacgag cgagataagg aagctgcgcg tactaaggcc cgtcaagagc ggcgcccaga
     3481 cgcgcgagga gatagagcgc atgctcatac gcaacctcga cgagaactcc tcgcccgagg
     3541 agctgcgcgt ctccgagctt gcgctcgaac gtctcggcat gttccccgaa gacttccgcc
     3601 tgcgcgagtt cctgataaag cttttgaccg agcaggtcgc cggctactac gaccccaaga
     3661 agcagcactt ctacctcgcc gactggatcg acctcgacgg gcagaagccc gtcatggccc
     3721 acgagctgac tcacgccctg caagaccagc acttcaacct ccgccgcttc gagaagtggc
     3781 ccgagcacga gtccgactcc gagttggccg cgcacgcgct cgtcgagggc gacgcgatgg
     3841 tgctgatgac gcagtacatc atgcgcagcc ccatgcggca gctcgccatg ctcaagtcgc
     3901 tcgtcactgg cggggcgggc tcgacggccg tcttcgacgc cgcgccccga gtgctgcgcg
     3961 agacactcgt cttcccctac acgcagggcg gcgcgtgggt aggccaagtt tacaaccgcg
     4021 gcggctggga ggccgtctcc gcagcctact cgaacctgcc caagtcaacc gagcagattc
     4081 tccaccccga gaagtatttc gagggcgagg cgccgcagaa agtcgctccc aaagatttgt
     4141 ccgcggctct cggcaagggc tggaagctcg cagaccacga cgttaacggc gagtggggct
     4201 acttcctgct ggttgacgag tttctaaagg cgagggaggt ttcgcagaag gcgtcggccg
     4261 gctggggcgg
//
LOCUS       DASPKR010000580         2638 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_90195, whole genome shotgun sequence.
ACCESSION   DASPKR010000580 DASPKR010000000
VERSION     DASPKR010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2638)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2638
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90195"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..861
                     /locus_tag="VD968_15610"
     CDS             106..861
                     /locus_tag="VD968_15610"
                     /inference="COORDINATES: protein motif:HMM:NF012415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HYE15869.1"
                     /translation="MRSRPQALAAALACAASLALFAAAPAPRAQKLAANSAAASYSAL
                     EHEVIRELNLARTRPADYAAHLEEMRALFSGRELRRPGRVALVTEEGPAALEEAIRFL
                     RAARPLPPLTLSPGMCSGAKALVEEQSASGATGHRGADGSFCEQRASRFGAWQAPIGE
                     NLSYGDETARERVIALIIDDGVANRGHRARIFNPSNRVVGVACGSHQMGAMCVLTFAG
                     GFTDRPAAAKPGAPRPAARSGRVPKAPAGSKKF"
     gene            complement(949..1116)
                     /locus_tag="VD968_15615"
     CDS             complement(949..1116)
                     /locus_tag="VD968_15615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15870.1"
                     /translation="MDNDRGHELDNVVPACIRCNYARRDMPFEAWSQLTDGMRRAREL
                     GLFKSWTGRTR"
     gene            complement(1367..1440)
                     /locus_tag="VD968_15620"
     tRNA            complement(1367..1440)
                     /locus_tag="VD968_15620"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1404..1406),aa:Pro,seq:ggg)
     gene            complement(1520..2077)
                     /locus_tag="VD968_15625"
     CDS             complement(1520..2077)
                     /locus_tag="VD968_15625"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HYE15871.1"
                     /translation="MNRAAVPIPEKLFFKIGEVCDITGVQAHVLRYWESEFPMLAPQK
                     NRAGQRTYRKRDVEMVLRIKELLYEDQYTIAGAKKKLSNELRGASKLKVVTPEMSAQA
                     ASAASAPTAPQLVPPPAPPTEEAAPPQAFAAPRENPPERAAVADAAPRLTDERRAAIR
                     SLREQLRELLGLLDSGGTTPGARRS"
     gene            complement(2275..>2638)
                     /locus_tag="VD968_15630"
     CDS             complement(2275..>2638)
                     /locus_tag="VD968_15630"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF025341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="retropepsin-like aspartic protease"
                     /protein_id="HYE15872.1"
                     /translation="EAGSRRPFVMLSEGRRALLDTGSGFGLAVDASAARALGINASGG
                     RERAGVRDLAGGRVEAQRVRPATVSVGPLVLRGVPTDLLTRAQKGAPVILGRDALRPF
                     ELTFDPVNRLVMLRPAEE"
BASE COUNT          421 a          878 c          896 g          443 t
ORIGIN      
        1 atgccggcgg ctttggcata aaagattccc ggccacgcaa cctgctcccg cctcggcgcg
       61 ggagcgcccc tgacactctt tcaaacgcga aaaggattta agaagatgag aagccgcccc
      121 caggccctcg ccgccgcgct cgcgtgcgcg gcctcgctcg cgctcttcgc cgccgccccg
      181 gcgccgcgcg cccagaagct cgcagcaaac agcgccgccg cgtcctactc ggcgctggaa
      241 cacgaagtca tcagggagtt gaacctcgcg cgcacgcgcc ccgccgatta cgccgcgcac
      301 ctcgaagaga tgcgcgcgct cttctcgggc agggagcttc gcaggccggg cagggtggcg
      361 ctcgtgaccg aagaggggcc ggccgcgctc gaagaggcga taaggtttct gcgggccgcg
      421 aggcctctgc cgcctctgac gctctcgccc gggatgtgct ctggcgcgaa ggcgctcgtc
      481 gaagagcaga gcgcctcggg agcgacgggc cacaggggcg ccgacgggag cttctgcgag
      541 cagcgcgcct cgcgcttcgg cgcgtggcag gcccccatcg gcgaaaacct ctcttacggc
      601 gacgagacgg cccgcgagcg cgtcatcgcc ctcatcatag acgatggcgt cgccaaccgc
      661 ggccaccgcg cgcgcatttt taacccgtcg aaccgcgtcg tcggcgtcgc ctgcggcagc
      721 caccagatgg gcgcaatgtg cgtcctgacc ttcgctgggg gcttcaccga ccgccccgcg
      781 gccgcaaaac ccggcgcccc acgccccgcc gccagatccg gccgcgttcc caaagcgccc
      841 gccggctcca agaaatttta gggagccggc ccggtaagtg aacctaaacc gtgaaggccc
      901 atgactcgcg agtcgtgggc cttcacggtt tgacgtaagc cgccttgatt acctggttct
      961 tcccgtccag ctcttaaaca gccccagctc acgggcgcgc ctcatgccgt ccgtgagttg
     1021 agaccacgcc tcgaagggca tgtcgcgccg tgcgtagtta cagcgtatgc aagcggggac
     1081 gacgttatcc agttcgtggc ccctgtcatt gtccacacgg tctaaggtca tcctcaagcc
     1141 cgtctcgccg cagtagctac agcctccggc gattaaagtc tcaatttgtt ccttcgtcag
     1201 gtcgcacgcc cgcccgcgca gcttgtccga acgcctggcc tctcgaagaa taaagcgcgc
     1261 gacgtctatg ttcgccgcgc gcatttgaga gaatttgagg ttacgacgcc gctgccacgc
     1321 ctgcttctta gccgggtctt tgtagggcat aagaaattga ggcgaatcgg gatgactgga
     1381 ttcgaaccag cgacctctcg caccccaagc gagcgcgcta ccaggctgcg ccacatcccg
     1441 tgacggcgtt aagtatctcc ggaaacgggc ggctggtcaa atggggaggt ggggcgttcg
     1501 gaggcgaacg gaattcggtt caggagcgac gtgcgccggg ggttgtgccg ccggagtcga
     1561 gtaggccgag cagctcgcgg agctgttcgc ggaggctgcg tatggcggcc cggcgctcgt
     1621 cggtcaggcg gggcgcggcg tcggctacgg cggcccgctc ggggggattc tctctgggag
     1681 cggcgaaggc ttgcggcggt gcggcctctt cggtcggggg ggcaggcggc ggtacgagtt
     1741 ggggcgcggt cggcgcgctc gcagcggagg cggcctgcgc gctcatctcg ggcgtgacga
     1801 ccttgagctt gctggcgccg cgcagctcgt tcgagagctt cttcttggcg ccggcgatgg
     1861 tgtactggtc ttcgtagagc agctctttta tgcgcagaac catctccacg tcgcgcttgc
     1921 ggtaggtgcg ctgcccggcg cggttcttct gaggggcgag catggggaac tccgactccc
     1981 agtagcgcag aacgtgcgcc tgcacgcccg ttatgtcgca cacttctccg attttgaaga
     2041 agagcttttc ggggatgggg acggctgctc ggttcatctt taacgggcct ttcgggcgaa
     2101 tgaagccgga gcggaattat gagacggatg aaatttaaga gttttgaccg cgagccgccc
     2161 ctcgccaaag cggccgggcg ccagacccgc gctcatgtta ctcgcgcccc ttaagcgctg
     2221 tcaacgctat tccttaaccc gcctcggtta aggcgtaggc gcagccgccg ggggctactc
     2281 ctctgccggc ctgagcatga cgaggcggtt gacggggtcg aaggtgagtt cgaaggggcg
     2341 cagggcgtcg cggccgagga tgacgggagc gcccttctgc gcgcgggtca ggagatctgt
     2401 cgggacgccg cgaagcacga gcgggccgac gctcacggtg gccgggcgca cgcgctgcgc
     2461 ctcgactcgg ccgccggcca ggtcgcgcac gccggcgcgc tcgcgcccgc ccgaggcgtt
     2521 gatgccaaga gccctcgcgg cgctcgcgtc aacggcgagg ccgaagccgg agcccgtgtc
     2581 caaaagtgcg cgcctgcctt ccgagagcat cacgaacggg cggcggctcc cggcttcc
//
LOCUS       DASPKR010000581         4577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_476641, whole genome shotgun sequence.
ACCESSION   DASPKR010000581 DASPKR010000000
VERSION     DASPKR010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4577)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4577
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476641"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..592)
                     /locus_tag="VD968_15635"
     CDS             complement(<1..592)
                     /locus_tag="VD968_15635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15873.1"
                     /translation="MRRTEPAVNRIYARPPGFTLQHRAGRRLRWSGAAATDYAALVVL
                     SGDFHWRPEGDRESEQAKGGVIARGGALLSSPGDRLSAAARVHAEYMLVTLSPVFVLD
                     CAARARLARADSSVTFRARSVERDERLARLGRDLADELEEETPGQELVIAALVEQAIV
                     HLLRRHTNVRRSEQLELSRAGLVDRRIRRAVELMHAH"
     gene            complement(589..1407)
                     /locus_tag="VD968_15640"
     CDS             complement(589..1407)
                     /locus_tag="VD968_15640"
                     /inference="COORDINATES: protein motif:HMM:NF015000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase family
                     protein"
                     /protein_id="HYE15874.1"
                     /translation="MSRTPPPLTGAPSDGLPLIIGHRGDSAHAPENTMAAFGLALEAG
                     ADGVEFDVRLARDGAPVVIHDRTLERTALRPGFVEEMTSEELAGVRVGEWFNRRFTDC
                     ARPDFAREHVPTLTELFERFGRSFKTLYVEMKGEDGARLARLAAAVVAAVREHSLESS
                     AVVKCFAHEAIAEVKRLAPEIRTAALFERSLARPVVPAARIVRQALACGADEVSLHHT
                     LARRAVVEAARARGLGVVVWTVDSPAWLARARSYGLRAVITNDPALMRAASLSR"
     gene            complement(1404..3806)
                     /gene="glgB"
                     /locus_tag="VD968_15645"
     CDS             complement(1404..3806)
                     /gene="glgB"
                     /locus_tag="VD968_15645"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003844 - 1,4-alpha-glucan branching
                     enzyme activity [Evidence IEA];
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0043169 - cation binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0005978 - glycogen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HYE15875.1"
                     /translation="MTNRRTQQGAGDAFPGVPRAEVERLLALRSASPHSVLGAHPTAH
                     GVVLRAFRPEAVSVEVLIEGEPSRLMNRSHGAGLFELLIEGREQLFPYLLRVSYADGN
                     VFTMRDPYAFMPTVGPLDEHLFGEGRHWQIYERLGAHARDLGGVGGVSFAVWAPNAEG
                     VSVVGSFNNWDGRLHQMRRLGLSGVWELFVPDLQPGALYKYEIHRRGMLPFLKTDPYA
                     LYTEVPPATSSIVYEPSYQFTDGEWLARRASEDHLRRPMNIYEIHLGSWRRVTEEGNR
                     PLTYRETAPALADYCREVGFTHVEFLPLKGHPYGGSWGYQVANYYAPTARYGTPDDFR
                     FLVDYLHNRGLGVIMDWVPAHFPKDTWALGRFDGSPLYEHADPRMGEHPDWGTFIFDY
                     GRNEVRNFLIANALFWINECHVDGLRVDAVASMLYLDYSRSEGRWVPNKYGGRENLDA
                     IDFIRELNRVVHERHPGALMIAEESTSWPLVTKGSDQGGLGFDFKWNMGWMHDTLKYF
                     ERDPFVRRYFHNNLTFGITYAWSENFILPFSHDEVVHMKGSMLNKMHGTRAQKFANLR
                     ALYAYMWAHPGKKLLFMGGELGQWREWSEERSIDWHLLDEAEHRGLRDLVRDLNGLSA
                     ERPALHEWDVEPRGYEWMDVDNALENIVAFMRVASSGERVVCVCNFSAAPRPGYRLGL
                     PRAGTYRLILNTDAPIYGGADSLPTRALEAEGQPAHGRPFSASIDLPPLTTLWFLAPA
                     EPEASASTEPAAESNAAPPAKRPRARASLKEAAPGQAQQPAEPARTPRKAAKRAPRKK
                     AE"
     gene            complement(3803..>4577)
                     /locus_tag="VD968_15650"
     CDS             complement(3803..>4577)
                     /locus_tag="VD968_15650"
                     /inference="COORDINATES: protein motif:HMM:NF023478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3536 domain-containing protein"
                     /protein_id="HYE15876.1"
                     /translation="VEVLSGREGAREAFLARHARRALPDGERVIAFTLLEAARAALAM
                     YASCGWFFDDVAGLETLIVLRQAGRAIELMEELSLAPPVASFLDALSEARSNVLEKGN
                     GADIFLRTLAQTRATARSVAAGKSNGSAVKLDEDDYKRALELAREAARLGRRFDRASA
                     GRALEGALTSAARAAAVRPTPENLRSVRELMELGRELGLEANAERAQEFIYEAVTSGA
                     PPPDGLREVALALNISPAAFAPAGEADDAVPAFTGGQGG"
BASE COUNT          679 a         1497 c         1704 g          697 t
ORIGIN      
        1 ggtgcgcgtg cattagctcg acggcgcggc gtatgcgtcg gtcaactaac ccggcgcgcg
       61 aaagctccaa ctgttcggag cgtcggacgt tagtgtggcg gcgcaggagg tggacgatcg
      121 cctgctcgac aagggcggcg atgacaagct cctgccccgg cgtctcctcc tccaactcgt
      181 ccgcgaggtc gcgcccgagc cgcgcgagcc gctcgtcacg ctcgaccgag cgcgcgcgga
      241 aggtcacgga ggagtcggcg cgggctaggc gggcgcgggc cgcgcagtcg aggacgaaga
      301 cgggcgagag cgttactaac atgtactccg cgtgcacccg cgcggcggcg ctcaggcggt
      361 cgccgggcga ggagagcaaa gcgcctccgc gggcgataac gccgcctttg gcctgttctg
      421 actccctgtc gccctccggc cgccagtgga agtcgcccga gaggacgacg agcgctgcgt
      481 agtcggtcgc cgcggcgcca gaccagcgca gccgacggcc cgcgcggtgc tggagcgtga
      541 accccggcgg gcgcgcgtag attctgttga cggccggctc cgttcgtctc atcgggaaag
      601 tgatgcggcg cgcatgagcg cggggtcgtt cgtgatgacc gcgcggaggc catacgagcg
      661 tgcgcgcgcg agccacgcgg gcgagtcaac cgtccagacg acgacaccga ggccgcgcgc
      721 gcgcgcggct tcaacgaccg cgcggcgcgc gagcgtgtgg tgcagcgaga cttcgtcggc
      781 gccgcaggcg agcgcctgac ggacgatgcg cgcggccggg acgaccggcc gggcgaggct
      841 ccgctcgaag agggcggccg tgcggatttc gggggcgagc cgcttgacct cggcgatggc
      901 ttcgtgcgcg aagcacttga cgacggcgct gctctcaagt gaatgctcgc gcacggcggc
      961 gacgaccgcc gcggccagcc gggcgaggcg cgcgccgtcc tcgcccttca tctcgacgta
     1021 gagtgttttg aagctgcggc cgaagcgctc gaatagctcc gtgagcgtgg ggacgtgctc
     1081 gcgcgcgaag tcgggccgcg cgcagtcggt gaagcggcgg ttgaaccact cgccgacgcg
     1141 cacgcccgcc agctcttccg aggtcatctc ttccacaaag ccggggcgca gggccgtgcg
     1201 ctctagcgtg cggtcgtgaa tgacgacggg ggcgccgtcg cgcgcgagcc gcacgtcgaa
     1261 ctctacgccg tcggcgcccg cttcgagcgc cagcccgaag gccgccatcg tgttctctgg
     1321 cgcgtgcgct gagtcgccgc ggtggccgat gatgagaggt aggccgtccg aaggggcgcc
     1381 ggttagggga ggcggcgtgc ggctcattct gccttcttgc gcggggcgcg tttcgccgcc
     1441 ttgcgcggcg tccgggcggg ctcggccggc tgctgcgcct gcccgggcgc tgcctccttc
     1501 agcgaagcgc gtgcgcgggg cctcttcgcg ggcggcgcag cgttgctctc cgcggcgggc
     1561 tcagtcgaag cgctcgcctc cggctcggcg ggcgcgagga accagagcgt cgtgagcggc
     1621 ggaaggtcaa tcgaggccga gaaggggcgg ccgtgcgcgg gctgcccttc ggcctcgagc
     1681 gctcgggtcg gtagcgagtc ggcgccgccg tagatggggg cgtctgtgtt gagaatcagc
     1741 cggtaagtgc cggcgcgagg gaggccgagg cggtagccgg ggcgcggcgc ggcggagaag
     1801 ttgcagacgc agacgacgcg ctcgcccgac gaggcgacgc gcatgaaggc gactatgttc
     1861 tctagcgcgt tgtcaacgtc catccactcg tagccgcgcg gctcaacgtc ccactcgtgt
     1921 agcgcggggc gctcggccga gaggccgttt aagtcgcgca cgaggtcgcg caggccgcgg
     1981 tgctccgcct cgtcgagcag gtgccagtca atgctgcgct cttcgctcca ctctcgccac
     2041 tgccccagct cgccccccat gaagaggagc ttcttgccgg ggtgcgccca catgtatgcg
     2101 taaagggcgc ggaggttggc gaacttctgc gcgcgcgtgc cgtgcatctt gttgagcatc
     2161 gagcccttca tgtgcacgac ctcgtcgtgc gagaagggga ggatgaagtt ctcgctccac
     2221 gcgtaggtga tgccgaaggt gaggttgttg tggaagtagc ggcgcacgaa cgggtcgcgc
     2281 tcgaaatact tgagcgtgtc gtgcatccag cccatgttcc acttgaagtc gaacccgaga
     2341 ccgccctggt cagagccctt cgtcacgagc ggccaggagg ttgactcctc ggcgatcatc
     2401 agcgcgccgg ggtggcgctc gtgcacgacg cggttgagct cgcgtatgaa gtcaatcgca
     2461 tccaggttct cgcgcccgcc gtacttgttc ggcacccagc gcccctcgga gcggctgtag
     2521 tcgaggtaga gcatcgaggc gacggcgtcc acgcgcaggc cgtcaacgtg acactcgttt
     2581 atccagaaga gcgcgttggc gatgaggaag ttgcggactt cgttgcggcc gtagtcgaag
     2641 atgaaggtcc cccagtcggg gtgctcgccc atgcgcgggt ctgcgtgctc gtagagcggc
     2701 gagccgtcga agcgcccgag cgcccaggtg tctttcggga agtgcgcagg cacccagtcc
     2761 attatgacgc cgagcccacg gttgtgcagg taatcaacga ggaagcggaa gtcgtcgggc
     2821 gtgccgtagc gcgccgtggg cgcgtagtag ttcgcgacct ggtagcccca cgagccgccg
     2881 taggggtggc ccttgagggg aaggaactcg acgtgcgtaa agcccacctc gcggcagtag
     2941 tcggcgagcg cgggcgccgt ctcgcggtat gtgagcgggc ggttgccctc ctctgtgact
     3001 cgccgccacg agccgaggtg aatctcgtag atgttcatcg gccggcgcag gtgatcttcg
     3061 gaggcgcggc gcgcgagcca ctcgccgtcc gtgaactggt aactaggctc atagacgatg
     3121 gaagacgtgg cgggcgggac ttccgtgtag agcgcgtagg ggtctgtctt gaggaagggg
     3181 agcataccgc ggcggtgaat ctcgtacttg tagagcgcgc cgggctgaag gtcaggcacg
     3241 aacagctccc agacgccgga gagcccgagc cggcgcatct ggtggaggcg cccgtcccag
     3301 ttgttgaagc tcccgacgac gctcacgccc tcggcgttcg gcgcccagac ggcgaacgag
     3361 acgccgccga cgccgccgag gtcacgcgcg tgcgcgccga gcctctcgta gatctgccag
     3421 tggcgcccct cgccgaagag gtgctcgtcg agcgggccga cggtgggcat gaacgcgtag
     3481 gggtcacgca tcgtgaagac gttgccgtcc gcgtacgaga cccggagaag gtaagggaag
     3541 agctgctcgc gcccttctat gagcagctcg aagaggccgg cgccgtgcga gcggttcatc
     3601 aggcgcgacg gctcgccctc gattaatact tcgacgctca cggcctcggg ccggaaggcg
     3661 cggaggacta cgccgtgcgc ggtcgggtgt gcgccgagta ccgagtgcgg ggacgcggag
     3721 cggagcgcga gcagcctctc gacctccgct cgcgggacgc cgggaaaagc gtcgcccgcg
     3781 ccctgctggg tgcgcctgtt cgtcatcctc cctggccccc cgtgaaggcc ggcacggcgt
     3841 cgtcggcctc gcccgcgggc gcgaaggcgg cgggcgaaat gttgagcgcg agcgcgacct
     3901 cgcgcaaccc gtccggcggc ggcgcgcccg atgtgacggc ctcatagata aactcctgcg
     3961 ctcgctcggc gttggcttcg agcccgagct cgcgccccag ttccatcagc tcgcgaaccg
     4021 atcggaggtt ctcgggcgtc ggccgcacgg ccgccgcgcg cgcggcgctc gtcagcgcac
     4081 cctctaaggc gcggccggcg gaggcgcggt cgaagcggcg gccgagccga gccgcctcgc
     4141 gcgcaagctc gagcgcgcgt ttgtagtcgt cttcgtcgag cttgacggcg ctgccgttag
     4201 acttgccggc cgcgacgctc cgcgcggtcg cgcgcgtttg ggctaaggtg cgcagaaaaa
     4261 tgtctgcgcc gttgcccttc tcgaggacgt tgcttctggc ttcggagagg gcgtcgagga
     4321 acgacgcgac gggcggcgcg aggctcagct cctccataag ctcgattgca cgccccgcct
     4381 ggcgcagcac gatgagagtc tcgaggcccg cgacatcgtc gaagaaccag ccgcagctcg
     4441 cgtacatcgc gagcgccgcg cgcgcggctt ccaggagcgt gaaggcgatg acgcgctcgc
     4501 cgtccgggag cgcgcgccgt gcgtggcgcg cgaggaaggc ttcgcgcgcg ccctcgcggc
     4561 ccgacaggac ttcgacg
//
LOCUS       DASPKR010000582         3230 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_609024, whole genome shotgun sequence.
ACCESSION   DASPKR010000582 DASPKR010000000
VERSION     DASPKR010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3230)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3230
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_609024"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..223
                     /locus_tag="VD968_15655"
     CDS             <1..223
                     /locus_tag="VD968_15655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15877.1"
                     /translation="GLKVRRAASPVEEAGEGEWLVLAGGAEALAESVGLLAQAKLAAG
                     EGAGADELRAIYVRPSDAELKERCQAPGQ"
     gene            202..711
                     /gene="rimI"
                     /locus_tag="VD968_15660"
     CDS             202..711
                     /gene="rimI"
                     /locus_tag="VD968_15660"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: protein motif:HMM:TIGR01575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HYE15878.1"
                     /translation="MSSARAVREIEHAGFLIGAMTEHDLLEVVEIEETTGLSLWGWDA
                     YRAELERPEALMLAARSPRPDPSTGRIVSGFIAARMSADELHVNNIAVRPQARRAGLG
                     SALLGAALELGAEGGAVSAVLEVRVGNLAAQGLYRRLGFVVVGQRRNYYKQPPEDALV
                     MVAPLVSNA"
     gene            837..1079
                     /locus_tag="VD968_15665"
     CDS             837..1079
                     /locus_tag="VD968_15665"
                     /inference="COORDINATES: protein motif:HMM:NF016231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HYE15879.1"
                     /translation="MELTNADSLKEQLLASDPEFRELAREHGRYEQRLSELSSLQYPS
                     DEEQLEEITLKKKKLAVKDQMHAIMLRHQKAEATVH"
     gene            1208..1843
                     /locus_tag="VD968_15670"
     CDS             1208..1843
                     /locus_tag="VD968_15670"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: protein motif:HMM:NF003685.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HYE15880.1"
                     /translation="MHREGLIWVLVPALLATAAGLLGFWWAPLWAVAALLALVALFMA
                     YFFRDPQREAPGDAGIVVSPADGRVTRVEKLARGDAGSPTLVSIFLSPFDVHVNRSPI
                     AGTILDVTYTKGSFKMATREDASLVNEQNALTIQGELITVVCKQIAGVLARRIVCWKR
                     PGDKLGLGERFGLIKFGSRTDLVLPSEVRVEVEVGARVRGGVSVIGRVSDG"
     gene            1836..2738
                     /locus_tag="VD968_15675"
     CDS             1836..2738
                     /locus_tag="VD968_15675"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylcholine/phosphatidylserine synthase"
                     /protein_id="HYE15881.1"
                     /translation="MAEQGARKQAAAAEEPRVERRGIKKGLYLLPSAFTAANIGMGYF
                     AVMGALRGFQLLDGGGPDADVARATAHFDNASRAIGWAVLFDALDGRIARLTKTTTEI
                     GIQLDSLADVLTFGIAPAVLVYAWGYGAAFPDGSQLQSLGWFVSFMFLICGALRLARF
                     NVQAMRPRTLAEGTAKVDKKNFVGLPIPAAAGLLAALVHFAPRPLATYDGNLPNLYSG
                     IIMGLVAVLALLMVSTIRYSSFKAVGAGKRSTAKVLPLMAATGMLVWLYSRYVLLAIV
                     GAYVAHGLVLRLLSLLRLRPRTEG"
     gene            complement(2751..>3230)
                     /locus_tag="VD968_15680"
     CDS             complement(2751..>3230)
                     /locus_tag="VD968_15680"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE15882.1"
                     /translation="KALRAPVALDGDMVFAGSTDGSVYAISDRTGRLVWSARTGGSVQ
                     SVVSAGKSLLVTSLDNFVYSVSPRRGRRIWKRLLAGRVSASPLVVSDAVLLAPLSGDE
                     CPVLDLDDGKKINSVHVGEDNNTGASPLLQGNLILLTTRKGLIAYSGQTASAGHRPD"
BASE COUNT          541 a         1039 c         1127 g          523 t
ORIGIN      
        1 gggcttaaag gtcaggcgcg cggcgtcgcc ggtcgaggag gcgggcgagg gcgaatggct
       61 cgtactggcg ggcggtgccg aggcgctcgc cgagagcgtg ggcttgctcg cgcaggcgaa
      121 actcgcggcg ggcgaagggg ccggcgcgga cgagctgcgc gcgatatacg tcaggccgtc
      181 ggacgcggag ctgaaggagc gatgtcaagc gccagggcag tgagggagat cgagcacgcg
      241 gggttcctca tcggcgccat gaccgagcac gacctgctcg aagtcgttga gattgaggag
      301 actacggggc tgagcctgtg gggctgggac gcctaccgcg ccgagctgga aaggcccgag
      361 gccctcatgc tcgccgcgcg ctcgccgcgg cccgacccct cgaccggccg catcgtctca
      421 ggcttcatcg ccgcccgcat gagcgcggac gagctccacg tcaacaacat cgccgtcagg
      481 cctcaagcgc gccgcgcggg gctggggagc gcccttctcg gcgccgctct cgagttgggc
      541 gctgagggtg gcgccgtctc ggccgtgctc gaagtcaggg tcgggaacct ggcggcgcag
      601 gggctctaca ggcggctcgg gttcgtcgtc gtcggccagc ggcgcaacta ctacaagcag
      661 ccgcccgagg acgcgctcgt catggtcgcg ccgctggttt caaacgcttg atacggcccc
      721 agaattgggc taacattttg gcagtcggaa aggcccgaac gcgtagccgc ttaaccgaag
      781 gacgacgcgc cccggacgat gacaccaccc acgcatctga aaggagacat tccgagatgg
      841 aactgacgaa tgcggacagc cttaaagagc aactgctggc gagcgacccg gagttccgcg
      901 aactagcgcg cgagcacggg cgctacgaac agcgcctcag cgagttgtcg tcgctacagt
      961 acccgagcga cgaggagcag ctcgaagaga ttacgctcaa gaagaagaag ctggccgtga
     1021 aggatcagat gcacgcaatc atgctgcgac accagaaggc ggaggccacc gtccactagc
     1081 gcccgcagcg cccgctgtgg cgcgcggcgg ccgtggatgg ctccggtaat gttctaaggg
     1141 gcgggggcgc gtcaaggttt ttgagcgccc cctttcccgt tgaagaggcg ggggagagtt
     1201 tcgacggatg cacagagagg gtctcatctg ggttttagtc ccggcgctgc tggctactgc
     1261 ggccgggctt ctgggtttct ggtgggcgcc gctttgggcg gtggctgcgc ttctggcgct
     1321 cgtcgcgctc ttcatggcct acttcttccg agacccgcag cgcgaagccc cgggtgacgc
     1381 cggcatcgta gtctcgccgg ccgacgggcg cgtcacgcgc gtcgagaagc tcgcgcgggg
     1441 cgacgccggc tcgcccacgc tcgtcagcat cttcctttcg cccttcgacg ttcacgtcaa
     1501 ccgctcgccc atcgcaggca ccatcctcga cgtgacctac acgaagggca gcttcaagat
     1561 ggctacgcgc gaggacgcga gcctagtcaa cgagcagaac gctttaacaa ttcagggcga
     1621 gctcatcacg gtcgtgtgca agcagatagc gggcgtgctc gcgcgccgca tcgtctgctg
     1681 gaagaggccg ggcgacaagc tgggcctggg cgagcggttc gggctaatca agttcgggtc
     1741 gaggactgac ctcgtgctcc cgtccgaggt gcgggtcgag gtcgaggtgg gcgcgcgcgt
     1801 gcgcgggggc gtgagcgtca tcgggagggt ctctgatggc tgagcagggc gcgcggaagc
     1861 aggcggcggc cgccgaagag ccgagggtcg agaggcgcgg cattaagaag ggactgtacc
     1921 ttctgccctc ggccttcacg gcggcgaaca taggcatggg ctacttcgct gtgatggggg
     1981 cgctgcgcgg cttccaactc ctcgacggcg gggggccgga cgccgacgtt gcgcgcgcga
     2041 ccgcgcactt cgacaacgcc tcgcgcgcaa tcggttgggc cgtcctcttc gacgccctcg
     2101 acggcaggat tgcgcgcctg acgaagacga ccaccgagat aggcatacaa cttgactcgc
     2161 tcgccgacgt cctcacgttc ggcatcgcgc ccgccgtgct cgtctatgcg tggggctacg
     2221 gggcggcctt cccggacggg agccagctac agagtctcgg ctggttcgtc tccttcatgt
     2281 tcctcatatg cggggcgctc aggctcgcgc gcttcaacgt gcaggcgatg cggccgcgaa
     2341 cgctcgccga ggggacagcg aaggttgaca agaagaactt cgtcgggctg ccgataccgg
     2401 ccgccgcggg gctgctcgcc gcgctcgtcc acttcgcgcc gcgcccgctc gccacatacg
     2461 acggcaacct cccgaacctt tacagcggca tcatcatggg gctcgtcgcc gtgctcgcgc
     2521 tcctgatggt gagcactatc cgctattcga gcttcaaggc ggtaggcgca ggcaagcgca
     2581 gcacggcgaa ggtgctcccg ctgatggccg ccacagggat gctcgtctgg ctgtactcgc
     2641 gctacgtgct gctcgcaatc gtgggcgctt acgtcgcgca cgggctcgtc ctccggctgc
     2701 tctcgctttt acgtttgagg ccgcgaacgg aagggtgagc cgcgcgctcg tcaatcgggc
     2761 ctgtggccgg cgctcgcggt ttggcccgag taggcgatga gccccttgcg cgtcgtcagc
     2821 agtatcaagt tgccctgaag gagcggcgag gcgccggtgt tgttgtcctc gccgacgtgg
     2881 acgctgttta tcttcttccc gtcgtctaaa tctaaaacgg ggcattcgtc gccggagagg
     2941 ggcgcgagca gcacggcgtc ggagacgacg agcgggctag cggagacccg gcccgcgagc
     3001 agacgcttcc aaatcctgcg gcccctgcgc ggcgagaccg aatagacgaa gttgtcgagc
     3061 gacgtgacca gcagcgactt accagccgag acgaccgact gaaccgaccc tcccgtccgc
     3121 gcactccaca ccagccgccc agtcctatcg ctaatcgcat agaccgagcc gtcggtcgag
     3181 cccgcgaaga ccatgtcgcc gtctaacgcg actggcgcgc gcagagcctt
//
LOCUS       DASPKR010000583         6042 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_91833, whole genome shotgun sequence.
ACCESSION   DASPKR010000583 DASPKR010000000
VERSION     DASPKR010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6042)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6042
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91833"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1120
                     /locus_tag="VD968_15685"
     CDS             <1..1120
                     /locus_tag="VD968_15685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15883.1"
                     /translation="GRDTLLVQSGEDQVSTFVTRGRELLAASSNGGKLFRLGSESVRE
                     GSYESPVRDARFVASWGRVWWRGRGAVELQTRTGNTERPDATWSEWSTPYREPSGTAV
                     TSPRARFIQWRAVLRSAAGGEGAVVEDVSIAYLPRNVAPEILTIQILPVGVALQPMAQ
                     MPVDPGVEAAGLEPSLVGAVAQIPPRRAFQRGAVSLQWTAEDRNGDQLEYSVYYRGVG
                     DSTFHLLRENMRENFFSVDGAALGDGRYVFRVVASDAPENSLGKALTGERLSEPVDVD
                     GTPPVVRVVGEAQALPEGRARVRFAVEDASGMVRRADVSVDSREWMTVFPEDGIADSP
                     RETYALELPLAGAGEHVISLRAFDGGGNVGSARVVVRR"
     gene            1361..1567
                     /locus_tag="VD968_15690"
     CDS             1361..1567
                     /locus_tag="VD968_15690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15884.1"
                     /translation="MKRLKQIILTALALCALSANALAFDDGQKGDKKPPKPDVKIEKG
                     QKPPPPPPPKNDGGNRGGNNNKKP"
     gene            1701..2321
                     /locus_tag="VD968_15695"
     CDS             1701..2321
                     /locus_tag="VD968_15695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15885.1"
                     /translation="MNKRVKSKFLRAAAAVVTLLGALSAAQAPAGAQSRRGGGGLLAQ
                     AERYSGDQFRFETATPRGARVVSVNRPSGAMLQAIDRGLSELFAVARRRGYRARLSHS
                     EYTIFVARADRTRNDEGHYSPDIALGAAQYRGSVYDRGGYVYAAGMVLSMEPGAFLIA
                     EHDRDFQRVADVARYEGEHIILYHNDRRLYSKTADHSRGGGHPVLQ"
     gene            complement(2413..3246)
                     /locus_tag="VD968_15700"
     CDS             complement(2413..3246)
                     /locus_tag="VD968_15700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15886.1"
                     /translation="MSSVKSRVVLALALLLSLAPAAARAQEEQQQKSPAPGAAQQQSS
                     PGFERFRNRVFEVTHRDPVMLASVLHPLGSGHGGALISPNREFKTITVRDYAANIAVI
                     EEAIKRFDRPVPAPPSVEFQIHMLVASNDPAASNRFPAELNEAVSRLQPSLGYKSYTL
                     MGSQVVRSREGRGEIYNKGVADLKLTDNAAAGRNPVFYNYTIRAVSLDPTASPGKVEV
                     EEFSLDMKIPLLASADKVVYEDVGFKNPVSLRQGERVVVGTTSVGDKSVVVILSATSI
                     R"
     gene            3468..4664
                     /locus_tag="VD968_15705"
     CDS             3468..4664
                     /locus_tag="VD968_15705"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HYE15887.1"
                     /translation="MRRIDLTKAQAARSSTIRDINRQIVLNYIRDREPISRADIARVT
                     ELQRSTVSTIVEELKAEGLIEEVGAGQSTGGRRPTMLRLRAAGVLAIGVDIKPSSTTI
                     VTSDLVGRVVEREEFQNSPRPDEMAAQVIGRVRQVAERDSSGRVAGVGVSLPGLVDPT
                     TGRAIYIPWFRWRDWAIAEEIKKATGLDAQVDNDANAAALAELWFGRPEVSDSRDFIM
                     VLVAEGIGTGIVFDGQIYRGERGAAGEFGHMVVGQHAPVACSCGNHDCWEAFSSERAA
                     VARYVKNVGGGDAKAARICFGELVERALGGEQAAIDALTETAHYLGIGISNLIVGLSP
                     ESVVVGGAITRAWPIIAPSVEETIQRSIRRGLPSARIVPSTLNGPTLMGAISLVLSRK
                     FGLAEV"
     gene            4689..5852
                     /locus_tag="VD968_15710"
     CDS             4689..5852
                     /locus_tag="VD968_15710"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HYE15888.1"
                     /translation="MRRADVVVVGAGVIGASVAYHLAARGCRDVLVVERGQSPAPGST
                     GRATGGFRSQFATAVNVRLSLLSRAKLLGFSDEHGVDPGYSPRGYLFLAGDQAQMAAL
                     LAAQRVQRDEGLAEARAVSAEEALRLNPALGGEGFIGGTFCPTDGFIRPLEILRGYTA
                     SAERLGVSFERGVGVEGFRKGAGGRVESVLTTAGEIAAGSVVNAAGAWAGRLAASAGV
                     ALPVVPLKRQVAVTRPFSRLTEEMPMTIFVGDGFHLRVRDGRVLLLWPDEREDRGSFS
                     IEVEDEWVASVLGKARARLPCLAGAEVERELCWAGLYEMSPDKHAILGRASGVENFYL
                     ANGSSGHGVMHSPALGQLLAEIILDGEAHSLDARPLRPERFEEGAPNVAHDFL"
BASE COUNT          946 a         2004 c         2146 g          946 t
ORIGIN      
        1 cgggcgcgac acgctgctcg tgcagtccgg cgaggatcag gtttccacgt tcgtcacgcg
       61 cgggcgcgag ctgctcgcgg cgtcgtctaa cggcgggaag cttttccggc tcggctcgga
      121 gagcgtaagg gaagggagct acgagtcgcc tgtgcgcgac gcgcgcttcg tcgcctcttg
      181 ggggcgcgtg tggtggcgcg gccgcggcgc cgtcgaactt cagacgcgaa cgggcaacac
      241 cgagcggccc gacgcgacat ggagcgagtg gagcacgccc taccgcgagc cctcggggac
      301 ggccgtaacg agcccgcgcg cgcgcttcat acagtggcgc gcggtgctcc gctcggcggc
      361 cggcggcgag ggcgccgtgg tcgaggacgt gagcatcgcc tacctgccgc gcaacgtcgc
      421 acccgaaatt ttgacgattc agatactgcc cgtcggcgtc gcgcttcagc cgatggcgca
      481 gatgccggtt gaccccggcg tggaggccgc ggggctcgag ccctcgctcg ttggcgcggt
      541 cgcccagata ccgccgcgcc gggccttcca gcgcggcgcc gtctccctgc aatggacggc
      601 cgaagaccgc aacggcgacc agctcgaata ttccgtctat taccgcggcg tcggcgactc
      661 gaccttccac ctgctgcgcg agaacatgcg cgagaacttc ttctcggttg acggcgcggc
      721 gctcggcgac ggccgctacg tcttccgcgt ggtggcgtcg gacgcgcccg agaactctct
      781 cggcaaggcg ctgacgggtg agcggctgag cgagccggtg gacgttgacg gcacgccgcc
      841 cgtcgtgcgc gtcgtggggg aggcgcaggc gctccccgag gggcgcgccc gcgtgcgctt
      901 cgccgtcgag gacgcgagcg ggatggttag gcgcgccgac gtgagcgttg acagccgcga
      961 gtggatgacg gtcttccccg aggacggcat cgccgacagc ccgcgcgaga cttacgcgct
     1021 cgaactcccg ctcgcgggag cgggagagca cgtaatctcg ctgcgcgcct tcgacggcgg
     1081 gggcaacgtc ggcagcgccc gcgtcgtcgt aaggcgttga aaacgggccg cgcggccccc
     1141 gctttcatgg taggttttct tacacgatac ggtgcggggg cgccggaaac ggtgcgaggc
     1201 gcggccccgt cttttaagtt aaggcgcgaa aaggcttgga agtcggcgag tgcgtgcgct
     1261 ggcactcctt ttgccagacg gaaaggcgag acacgcgcgt ctctcctttc tccctcccat
     1321 gcgcggttaa gacgaacatg aggaggcagt tttcgtggcg atgaaacgac tgaagcaaat
     1381 cattctgacg gcgctcgccc tctgcgcgct ctccgcgaac gccctggcgt tcgacgacgg
     1441 gcagaagggc gacaagaagc cgcccaagcc cgacgtgaaa atcgagaagg ggcagaagcc
     1501 gccccctccc ccgccgccca agaacgacgg cgggaaccgg ggcggcaaca acaacaaaaa
     1561 gccttgaagc ggcggccccg ccgcagtccc tcatcgaagg gccgaaggcg ggccagggtt
     1621 ttcgtcaaaa agaagggcgc gcccccgaag ctctcgagct ttcagcggcg cgcccttaaa
     1681 actttcaggg gcaaagggaa atgaacaaga gggtgaagtc aaaatttttg agggcggcgg
     1741 ccgcagtcgt aaccctgctg ggcgcgctgt cggccgcgca ggctccggcc ggcgcgcagt
     1801 cgaggcgtgg cggcggcggg ctgctcgcgc aggccgagcg ctattcgggc gaccagttcc
     1861 gcttcgagac cgcgacgccg cgcggcgcgc gcgtcgtctc cgtgaaccgc ccgtccgggg
     1921 cgatgcttca ggcgattgac cgcgggctct cggagctttt cgccgtcgcg cgcaggcgag
     1981 ggtatcgcgc gcgcctgagc cattcggagt acaccatctt cgtcgcgcgc gcagaccgca
     2041 cgcgcaacga cgagggccac tactcgcccg acatagcgct gggcgcggcg cagtaccgcg
     2101 ggagcgtcta tgaccgcggc ggctacgtct atgccgccgg catggtgctc tcgatggagc
     2161 cgggcgcctt cctgatcgcc gagcacgacc gcgacttcca aagagtcgcc gacgtcgcgc
     2221 gctacgaggg cgagcacata atcctttacc acaacgaccg ccggctctac tccaagaccg
     2281 ccgaccacag ccgcggcggc ggccaccccg tattgcagta gcccgaagtg cgtgagaaga
     2341 atcaaagggg cggggtgaag agacgccggg tctcctcact ccgcccctca atcttttgcc
     2401 actcctctgt tcttacctga tcgaggtggc cgagaggatt acgacgacgc tcttgtcgcc
     2461 gacgctggtg gtgccgacga caacgcgctc gccctgccgg aggctgacgg ggttcttgaa
     2521 gcccacgtcc tcgtaaacga ccttgtcggc cgatgcgagc agagggattt tcatgtcgag
     2581 cgagaactcc tcgacctcaa ccttgccggg gctcgccgtg gggtcgagcg agacggcccg
     2641 tatcgtgtag ttgtagaaaa ctgggttgcg gccggccgcg gcattgtcgg tgagcttaag
     2701 gtctgcgacg cccttgttgt agatctcgcc gcgcccctcg cggctgcgca cgacctgcga
     2761 gcccatcagc gtgtagctct tgtagccgag cgagggttgt aggcggctga ccgcctcgtt
     2821 cagctcggcc gggaagcggt tcgaggcggc ggggtcgttc gacgccacca gcatgtgaat
     2881 ttggaactcg accgatggcg gcgcaggcac cggccggtcg aagcgcttga tggcctcctc
     2941 tattacggcg atgttggcgg cgtagtcgcg caccgtgatg gtcttgaact cgcggttcgg
     3001 gctgatgagc gcgccgccgt ggccgctccc cagcgggtga agcaccgagg ccagcatgac
     3061 cgggtcgcgg tgcgtgacct cgaagacgcg gttgcggaac ctctcgaagc cggggctgct
     3121 ctgctgttgc gcggcgccgg gcgcgggcga cttctgctgc tgctcctcct gcgcgcgcgc
     3181 ggccgcgggg gctagcgaaa gcaggagcgc gagcgcgaga acaactctgc tcttgactga
     3241 agacatactt tctcctctcg ggttgcggct gtcgtgcggc ggccgtggcg cccccgctcc
     3301 ggcagactta cacgccgccg cgcgcggaag gtttcagaaa cagcgcggcg gcgcgcgcgg
     3361 ccgaaaggtt gacgcgcggg cgcggcgcgg ctacaaagga gcttgttctt ttgagcccgc
     3421 gaaggaagcc tccccgtcac ggaaggcttc ggcctccccg gaaccagatg agacgaattg
     3481 atctcacgaa ggcgcaggcg gcgcgctcct cgacgatacg cgacatcaac cgccagatag
     3541 tgctcaacta catacgcgac cgcgagccca tctcgcgcgc cgacatcgcg cgcgtcaccg
     3601 agttgcagcg ctcgaccgtc tccaccatcg tcgaggagct taaggccgag ggcctcatcg
     3661 aggaggtggg cgccggccag tccacgggcg gccggcgccc gacgatgctg cggctgcgcg
     3721 cggccggcgt gctcgccatc ggcgttgaca taaagccttc gtccacgacc atcgtgacga
     3781 gcgacctggt gggccgcgtc gtcgagcgcg aagagttcca gaacagcccg cgccccgacg
     3841 agatggccgc tcaggtcatc gggcgcgtcc ggcaggtcgc cgagcgcgac agcagcggcc
     3901 gcgtcgccgg ggtcggcgtg agcctgcccg gactggttga cccgacgacg gggcgcgcca
     3961 tctacatccc ctggttccgc tggcgcgact gggccatcgc cgaggagata aagaaggcca
     4021 cgggcctgga cgctcaagtt gacaacgacg cgaacgccgc cgcgctcgcg gagctctggt
     4081 tcggccgccc cgaggtcagc gactcgcgcg acttcataat ggttctcgtc gccgagggca
     4141 tcggcacagg catcgtcttc gacgggcaga tttaccgcgg cgagcgcggc gccgcgggcg
     4201 agttcggcca catggtcgtc ggccagcacg cgcccgtcgc atgctcgtgc ggcaaccacg
     4261 actgctggga ggctttttcg tcggagcgcg cggccgtcgc gcgctacgtg aagaacgttg
     4321 gcgggggcga cgccaaggcg gcgcgcatct gcttcggcga gctggtcgag cgcgcgctcg
     4381 ggggcgagca ggccgccatt gacgccctga cggagacggc gcactacctc ggcatcggaa
     4441 tctcgaattt gatagtcggc ctctcgcccg agtcggtcgt cgtgggcggg gcgattacgc
     4501 gcgcttggcc catcatcgcc ccttcggtcg aggagaccat acagcgcagc atacggcgcg
     4561 ggctcccgtc ggcgcgcata gtgccctcga cgctcaacgg cccgacgctc atgggcgcca
     4621 taagcctcgt cctctcgcgc aagttcgggc tcgccgaagt ctaggagccc ttcgacttaa
     4681 tcgcacggat gagaagagct gatgtcgtcg tagtcggcgc gggcgtgata ggcgcgagcg
     4741 tggcttacca tctggccgcg cgcggctgcc gcgacgtgct cgtcgtggag cggggccagt
     4801 cgcccgcgcc cggcagcaca ggcagggcga cggggggatt tcgctcgcag ttcgccacgg
     4861 cggtcaacgt ccgactctcc ctgctctcgc gcgcaaaact tctggggttc agcgacgagc
     4921 acggcgttga ccccggctac agcccgcgcg gctatctctt cctcgcgggc gaccaggcgc
     4981 agatggctgc gctgctcgcg gcgcaacggg tgcagcgcga cgaggggctc gcggaggcgc
     5041 gggccgtgag cgccgaagag gcgctgcgcc tcaaccccgc gctcggcggc gaaggcttca
     5101 tcggaggcac gttctgcccg accgacggct tcatacgccc gctcgagata ctgcgcggct
     5161 acacggctag cgcggagcgt ctcggcgtta gcttcgagcg cggcgtgggg gtcgaggggt
     5221 tccgcaaggg cgcgggcggg cgcgtcgagt cggtgttgac gacggcgggc gagatagcgg
     5281 cgggctcggt cgtcaacgcg gcgggggcgt gggccgggcg cttggcggcg tcggcggggg
     5341 tggcgctccc cgtcgtgccg ctcaaaaggc aggtcgccgt cacgcggcct ttctcgcggc
     5401 tgacggaaga gatgccgatg accatattcg tcggcgacgg cttccacctc cgtgtgcgcg
     5461 acggccgcgt gctgctgctc tggcccgacg agcgggaaga cagaggctct ttcagcattg
     5521 aggtcgaaga cgagtgggtg gctagcgtcc tcgggaaggc gcgcgcgcgc ctgccgtgcc
     5581 tggccggggc cgaggtggag cgcgaattgt gctgggccgg cctctacgag atgtcgccgg
     5641 acaagcacgc gatactcggc agggcgtccg gagtggagaa cttctacctc gcgaacggct
     5701 cgtcgggcca cggcgtcatg cactcgcccg cgctcggcca gctcctcgcg gagattatcc
     5761 tcgacggcga ggcccactct ctcgacgcgc gcccgctccg ccccgagcgc ttcgaggagg
     5821 gcgcgcccaa cgtggcgcac gacttcctct gagggggaac gccgggcctt ttagccgttt
     5881 attcaatccc gacggacgtt cgcgcgcggc ttgacagcat cggggctgcg ttttaaagtc
     5941 gcggccctca cgcgcggcgt ggcccccgtg ggcgcgcggc tctcccggcc ccgaaccctg
     6001 cacaacttca gacggccttt ttggaggacg atagatgaaa aa
//
LOCUS       DASPKR010000584         4225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1514171, whole genome shotgun sequence.
ACCESSION   DASPKR010000584 DASPKR010000000
VERSION     DASPKR010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4225)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4225
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1514171"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VD968_15715"
     CDS             <1..200
                     /locus_tag="VD968_15715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15889.1"
                     /translation="MRRFGAGDLVIVARGRRYFSNDAFISRLQAEARPAAATSLGGVP
                     SAGVYVLDEASLQILAGALGR"
     gene            432..2480
                     /locus_tag="VD968_15720"
     CDS             432..2480
                     /locus_tag="VD968_15720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15890.1"
                     /translation="MTNSKPGPTARAALFLQAALLLLLAAAPARAQMSAAREDEDLLP
                     KAAARPPLFRMEVTPVGRDAQLLTVFGSLAGLPDAEPGGADVPLVCILRDTLGDSSPE
                     NDRLRYVWALTYTRPGAWQRFASAVPFLYGRVGGKKSASTGGMPPPVIDLAAPERDVW
                     RRFMWAALRNIVVNPYGAVAKTSSGTYRRNSERYRQAHILRALAILSLYEAETGERSP
                     FTPAETDEIHARLMLADKSFGGLIDDAYLERVRGRTDSQWLDTRGHNWELLRQRVEAE
                     GLHFEPLEMPDGSATHALVWVSRHDLAANAKKKFNSRFLNFKSPWGDQRLAGWTGHTE
                     TRYFDAEGRAVPEGAAGARAVELIPLALYGLDHPKIPSLLVDFRDGSNPKRREMSHRV
                     IEDVASNLLALSRFGDVHYFLGRTVFDFVTSRRGMDLNQPSRLRAYAQLKLLLSLDAT
                     LDRDLREEIGRRIECVSLNPLENDLAAEARLAREQHAALLAYASRPDGLPAHLDRERR
                     SEMVAVEHGRAERVMFRLASVLSLGFYKHRESAAPEVVRAALDRTRSLAYHRRFLREV
                     AKSSPVVEVVWNAEDVRRSLRHVAEAGGRADTATARAAARIFAQTRDDETRRLSLACL
                     YRINNEAAKSELLRIYRTPDLDSALRDLTAEYLRNSLREEQRIKPADARAIISVVGGQ
                     "
     gene            2477..>4225
                     /locus_tag="VD968_15725"
     CDS             2477..>4225
                     /locus_tag="VD968_15725"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HYE15891.1"
                     /translation="MRGKRFVSLLLLLFCCPVALGAGARRLVVLKVDGLPQSAVERFV
                     RERNPRTGKSLLPWIEHVFYERGTRLSNFYVRGMSLSGPSWSLLDTGQHLQIKANVEF
                     DRYTLHSYDYLNFIPFWIANVAGQRVDMPGPELLDEVGTPLLADAFPNDERHLSFQLY
                     QRGTRWTTLQRALQNRVSSRRPRELFDEWNIGIDSREILMEQMEREMVEKLKDPRIRY
                     LDFYTTDFDHAAHHNRDRATQLAALRDLDALVGRVWAAAQASPLAAETALVLVSDHGT
                     NTDERVYSQGYNLVHLLASAEGGGHHVVTKRRLLNDYALWGIYPLVSLVYTSSKDSYY
                     LDGQSAKYPTALLDFDGNERAAIQLRDSDLNLMHALLLELRHDGLPPEVRRAAAAAFF
                     AVIERRREGWKKTFEELREEVYALRRLIERQRAVVEALPKKWAKEDMSAGRDREARRQ
                     FARLDSWQTDEREYTSYLQTLANLLALDPARFNPRAVVVEDLIAKGTMGDHNTLHELQ
                     NYVVGPAPGGLVLAPDGSLDLERSFVRVNYFSLLGDASVRNNVQRGVENRPVDFVAVR
                     LPAESLGGAERGGEDLR"
BASE COUNT          666 a         1552 c         1349 g          658 t
ORIGIN      
        1 cgatgcggcg cttcggcgct ggcgatctcg tcatagtcgc gcgcggccgg cgctacttca
       61 gcaacgacgc cttcatctcg cgcctccagg cggaggcgag gccggccgcg gccacctcgc
      121 tcggcggtgt gccttcggcg ggcgtttacg tgctcgacga ggcgtcgctt cagattctcg
      181 ccggggcgct cggccgctag agggcgcgtg agcggggcgc gcaatcgccg cgctgaagtg
      241 gcaacgcgtc ctccggccgt gggcatcgga gggccgacaa acgggccggc ggatagatcc
      301 actgcggagg ggaacgggcg ttgcttgcgt gtagcgcgcg cccgaagttt tccctcccgc
      361 tcggcgcggg ggcgcagtcc tttcatttcc gttggagcgc aaacggtgag ggagaaggaa
      421 cgaagaggcg aatgacgaac tctaagccag ggccgaccgc gcgcgccgcg ctcttcctcc
      481 aggcggcgct cctactgctg ctcgccgcgg cgccagcgcg cgcgcagatg tcggccgcgc
      541 gcgaggacga ggacttactc ccgaaggccg cggcgcgccc gcctctcttc cgcatggagg
      601 tcacgcccgt cgggcgcgac gcgcagcttc tgaccgtctt cggcagcctc gccggcctgc
      661 ccgacgccga gcccggcggc gcggacgttc cgctcgtctg catactccgc gacacgctcg
      721 gcgactcgtc gcccgagaac gaccgcctgc gctacgtatg ggcgctcacc tacacgcggc
      781 ccggcgcgtg gcagcgcttt gcctcggcag tccccttcct ttacggccgc gtcggcggga
      841 agaagagcgc ttcgacaggc gggatgcccc cgcccgtcat cgacctcgcc gcccccgagc
      901 gcgacgtgtg gcggcgcttc atgtgggctg ctctacggaa catcgtcgtc aacccttacg
      961 gcgccgtcgc caagacctcc tcggggacgt atcgtcgcaa ctccgagcgc taccggcagg
     1021 cgcacatcct ccgcgcgctc gcgatacttt cgctctacga ggccgagaca ggcgagcgct
     1081 cgcccttcac gcccgccgag acggacgaga ttcacgcccg cctgatgctc gccgacaagt
     1141 cattcggcgg cctgattgac gacgcttacc ttgagcgcgt gcgcggccgc accgactcgc
     1201 agtggctcga cacgcgcggc cataattggg agcttctgcg ccagagggtc gaggccgagg
     1261 ggctgcactt cgagcctttg gagatgccgg acggcagcgc cacgcacgcg ctcgtctggg
     1321 tctcgcgcca tgacctggcc gcgaacgcga agaagaagtt caactctcgc ttcctgaact
     1381 tcaagagccc gtggggcgac cagaggctcg cgggctggac gggccacacc gagacgcgct
     1441 acttcgacgc tgagggccgg gccgtccccg aaggcgccgc tggcgcgcgc gccgtcgagt
     1501 tgatacccct cgcgctctac ggcctcgacc acccgaagat accctcgctg ctcgtggact
     1561 tccgcgacgg ttcgaacccg aagcgacgcg agatgtcgca ccgcgtcata gaggacgtgg
     1621 cctcgaacct gctcgcgctc tcgcggttcg gcgacgtaca ttatttcctg ggccgcaccg
     1681 tcttcgactt cgtcaccagc cgccgcggca tggacttaaa ccagccttcg cgccttcgcg
     1741 cctacgcgca gttgaagctg ctgctctcgc tcgacgccac gctcgaccgc gaccttcgcg
     1801 aagagatcgg gcgtcgcatt gagtgcgtct cgcttaaccc gcttgagaac gacctcgcgg
     1861 ccgaggcgag gctcgcgcgc gagcagcacg cggctcttct cgcctacgcc tcgcgccccg
     1921 acggcctgcc ggcgcacctc gaccgcgagc gccgctccga gatggtcgcc gtcgagcacg
     1981 gccgggccga gcgggtcatg ttccgcttgg cgagcgtctt aagcctcggc ttctacaagc
     2041 accgcgagag cgcggcgccc gaggtggttc gcgccgcgct cgaccgcacg cggagcctcg
     2101 cgtaccaccg ccggttcctg cgcgaggtcg cgaagagcag ccccgtcgtc gaggtcgtct
     2161 ggaacgctga ggacgtccgc cgctctctgc gccacgtggc ggaggcaggc gggcgcgccg
     2221 acacggccac ggcccgcgcc gcggcgagaa tcttcgctca gacccgcgac gacgagacgc
     2281 ggcgcctcag tctcgcgtgc ctctaccgca tcaacaacga ggcagcgaag agcgagttgc
     2341 tccgcatcta ccgcacgccc gacctcgact cggccctgcg cgacctcacg gccgagtacc
     2401 tccgcaactc gctgcgcgag gagcagcgca tcaagcctgc ggacgccaga gccatcatta
     2461 gcgtcgtcgg gggacaatga ggggcaagcg attcgtctca ctgctgctcc tcctcttctg
     2521 ctgccccgtc gcgctcggcg ccggggcgcg caggctcgtc gtcctaaagg ttgacgggct
     2581 gccgcagtcc gccgtcgagc gcttcgtgcg cgagcgcaac ccgcgcacgg gcaagagcct
     2641 tctgccctgg atagaacacg tcttctacga gcgcggcacg cgcctctcga acttctacgt
     2701 ccgcggcatg agcctgtcag gcccctcctg gtcgctccta gacacgggcc agcacctgca
     2761 gataaaggcc aacgtagagt tcgaccgcta caccctccac tcctacgact acctgaactt
     2821 catccccttc tggatagcga acgtcgcggg ccagcgcgtt gacatgcccg gccccgagtt
     2881 gctcgacgag gtcggcacgc cgctcctcgc cgacgccttc ccgaacgacg agcggcattt
     2941 gagcttccag ctctaccagc gcggcacgcg ctggacgacc ctacagcgcg ccctacagaa
     3001 ccgcgtcagc tctcgccgcc cgcgcgagct tttcgacgag tggaacatcg gtattgactc
     3061 gcgcgaaatc ctgatggagc agatggagcg cgagatggtc gagaagctca aagacccgcg
     3121 catccgctac ctcgacttct acacgactga cttcgaccac gccgcccacc acaaccgcga
     3181 ccgcgccacg cagttggcgg cccttcgcga cctcgacgcc ctcgtcggcc gcgtctgggc
     3241 ggccgcgcag gcgtcgccgc tcgccgccga gactgcgctc gtgctcgtct ccgaccacgg
     3301 cactaacacc gacgagcgcg tctatagcca gggctataac ctcgtccacc tgctcgccag
     3361 cgccgagggc ggcggccacc acgtcgtaac gaagcggcgg ctcctgaacg actacgccct
     3421 gtggggcatc tacccgctcg tctcgctcgt ctatacttcc tcgaaagact cctactacct
     3481 cgacggccag agcgcgaagt acccgaccgc cctgctcgac ttcgacggca acgagcgcgc
     3541 cgcgatccag ctacgcgaca gcgacctgaa cctcatgcac gcgctgctgc tcgagctcag
     3601 gcacgacggc ctcccgcccg aggttcggcg cgcggccgcg gctgccttct tcgcagtcat
     3661 cgagcgccga cgtgaagggt ggaagaagac atttgaggaa cttcgcgagg aggtctatgc
     3721 gctgcggcgt ctcatcgagc ggcagcgcgc cgttgtcgag gcgctgccga agaagtgggc
     3781 gaaggaggac atgagcgccg gccgcgaccg tgaggctcgc cggcagttcg cacgcctcga
     3841 ttcctggcag acggacgagc gcgagtacac ttcttatctt cagacgctcg ccaacctgct
     3901 cgcgctcgac ccggcgcgct tcaacccgcg ggcagtcgtc gtcgaagacc tgatagcgaa
     3961 gggcacgatg ggcgaccaca acacccttca cgagttgcag aactacgtcg tcggccccgc
     4021 gcccggcggg ctggtgctcg cgcccgacgg ctctctcgac ctcgagcgca gcttcgtccg
     4081 cgtcaactac ttctctctgc tcggcgacgc ctccgttcgc aacaacgtgc agcgcggcgt
     4141 cgagaaccgc cccgttgact tcgtggccgt gaggctgccc gccgagagcc tgggaggcgc
     4201 cgagcggggc ggcgaagacc tgcgc
//
LOCUS       DASPKR010000585         2957 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1123493, whole genome shotgun sequence.
ACCESSION   DASPKR010000585 DASPKR010000000
VERSION     DASPKR010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2957)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2957
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1123493"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..656
                     /locus_tag="VD968_15730"
     CDS             <1..656
                     /locus_tag="VD968_15730"
                     /inference="COORDINATES: protein motif:HMM:NF028121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TRAP transporter TatT component family protein"
                     /protein_id="HYE15892.1"
                     /translation="ADRLYERRESPERAREALALLRRALAADYKSYEAAWKLARAGFY
                     VGTHGGGEEKARLEAFREGIAAGEVAVRIEPNRPEGHFWLGACIGGRAKLQGPLYALS
                     SAGDIRREMEEVIKLDEGFQAGSAYLALGQLDLELPEILGGDDARALQNLEKGLQFGQ
                     NNALLRLRLAEAYFRLKRHAEARAQARAILEMKPSPGYEPEYKQAAEGAKRLLEKIK"
     gene            1001..2605
                     /locus_tag="VD968_15735"
     CDS             1001..2605
                     /locus_tag="VD968_15735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15893.1"
                     /translation="MKRTFCTLTLAALCCATFSTLTTLAQGRSEAMRPTHFDRMERPL
                     REISDRPVTTPARSGRDFEPGRPSPVGNSNPGGVDPLVERSQGTIGAYAEPKAATSGV
                     PVDPTYRVAPPDTTGDLGPNHYVQWVNLRYAVYTVQRDSSNNITGFSPVAGFPKQGNA
                     IWQGFGGPCEAYNDGDPLVQYDQFANRWVMTQFAVSSQPYTQCVAVSTGPDPTGTYYR
                     YAYSFGREFNDFPKIGVWSDGYYITYNMFRNGRTFSGANICVLERDKMLLGQSARQIC
                     KLTTVAHSLLPADIEGSTLPPAGSANPMLSIGTSSMSAWRYSVNWAAGTATLTGPTTV
                     SGVTSFSRACGGGACIPQPGTSQLLDSLGDRLNYRLSYRNFGTRESMVVNHAVATSGR
                     TGIRWYELRNASGQTLGTAPPVVHQQGTFSPDATYRWMGSAAIDKTGGIAIGYNVSSS
                     TLKPSIRYGYRGPADAPGVFGNETNILAGSGSQLTNLARWGDYSTLSVDPVDGCSMVF
                     TTEYLPSDGTFNWTTYIYSFKLSTCQ"
     gene            complement(2690..>2957)
                     /locus_tag="VD968_15740"
     CDS             complement(2690..>2957)
                     /locus_tag="VD968_15740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15894.1"
                     /translation="EGAVLMFLIRQASYTYGMHGVGLFVLASDVERFRPLIWLNGLSF
                     LLAAPVFFVIDYTSGMPLYWTVSDSLGCGFFGAAIFWLLRGDSH"
BASE COUNT          579 a         1049 c          897 g          432 t
ORIGIN      
        1 aggcagaccg tctctacgag cggcgcgagt cgccggagcg cgcgcgcgaa gccctcgcgt
       61 tgctcaggcg cgcgctcgcg gccgactaca agagctacga ggccgcgtgg aaactggcgc
      121 gcgccggctt ctacgttggc acgcacgggg gcggcgagga gaaggctcgc cttgaggctt
      181 tccgcgaagg catagcggcg ggcgaggtcg ccgtccgcat cgagccgaac aggcccgaag
      241 gacacttctg gctcggcgcc tgcatcggcg gccgcgccaa gctccagggg ccgctctacg
      301 cgctctcttc ggccggagac atacgccgcg agatggagga ggtcatcaag ctcgacgagg
      361 gcttccaggc cggcagcgcc taccttgccc tcggccagct agacctggag ctgccggaaa
      421 tactcggcgg cgacgacgcc cgcgccctac agaatctaga aaaaggcttg caattcggcc
      481 agaacaacgc gctcctccgg ctgaggctgg ccgaagccta cttcaggctg aaacggcacg
      541 ccgaggcgcg cgcacaggcc cgcgccatcc tcgaaatgaa gccgagcccc ggctacgagc
      601 cggagtacaa acaggcggcc gaaggcgcga agcgactgct tgaaaagatt aagtaaacgc
      661 ggccggactg ggctgctccc gccgacccgc acaccccgca acaaaatttg caaccgaggc
      721 cctctggcgg cttgaccgcc ggggtgtctt gtgcgaaagt gctggctccg cgtgaccact
      781 ctttcccgta tggtcacgaa ttcttacgac aagcgacagc gaaagaaagt tcccgaaggc
      841 gttacacgtg tactcttgtg ggccgttaag taaagccccg tcctgttaaa ggcttcattt
      901 ttagcgccgg tttcatctgg aaacgacact tgcccgcagc agccgggcgc ggctcacccc
      961 gacgcccact cctcagtaac ctacatgcta cggagggacg atgaagagaa ctttctgcac
     1021 gctcacattg gcggccttgt gctgcgccac ctttagcaca ctcaccacgc tcgcgcaggg
     1081 ccgctcggag gccatgcgcc cgacccactt cgacaggatg gagcgcccgc tgcgcgaaat
     1141 ctccgacagg cccgtgacga cgcccgcgcg cagcggccgc gacttcgagc cggggcgccc
     1201 gagcccggtc ggtaactcga accccggcgg cgtggacccg ctcgtggagc gcagccaagg
     1261 aaccatcggc gcctacgcgg agccgaaggc cgcgaccagc ggcgtccccg ttgaccccac
     1321 ctaccgcgtc gcgccgcccg acaccaccgg cgacctcggc cccaaccatt acgtgcagtg
     1381 ggtcaacctg cgctacgccg tctatacagt ccagcgcgac agctcgaata acatcacagg
     1441 gttcagcccc gtggccggct tccccaagca gggcaacgcc atctggcagg gcttcggcgg
     1501 cccgtgcgag gcgtacaacg acggcgaccc gctcgtgcag tacgaccagt tcgcgaaccg
     1561 ctgggtgatg acgcagttcg ccgtctcctc ccagccttac acgcagtgcg tcgccgtctc
     1621 gaccggcccc gacccgaccg gcacctacta ccgctacgcc tactccttcg gccgagagtt
     1681 caatgacttc ccgaagatag gcgtgtggag cgacggctac tacatcacct acaacatgtt
     1741 ccgcaacggg cgcaccttct cgggcgcaaa catctgcgtg ctcgagcgcg acaagatgct
     1801 cctgggccag tcggcccgcc agatttgcaa gctgacgaca gtagcccaca gcctcctgcc
     1861 ggccgacata gagggctcga cactgccccc ggccgggagc gcgaacccga tgctgagcat
     1921 cggcacgagc tcgatgagcg cctggcgcta cagcgtcaac tgggccgcag gcacggcgac
     1981 tctaacgggg ccgaccacgg tctcgggcgt cacgtccttc agccgcgcct gcggcggcgg
     2041 cgcctgcatc ccgcagcccg gcacctcgca gttgctcgac tcgctcggcg accgcctgaa
     2101 ctaccgcctc agctaccgca acttcggcac gcgcgagtcc atggtagtta accacgccgt
     2161 cgccacaagc ggcaggacgg gcatacgctg gtacgagctg cgcaacgcct ccgggcagac
     2221 gctcggcacc gcgccgcccg tagtccacca gcaggggacg ttctcgcccg acgcgaccta
     2281 ccgctggatg ggcagcgccg ccatagacaa gacgggcggc atcgccatcg gctataacgt
     2341 ctccagctcg accctcaagc ccagcattcg ctacggttac cgcggcccag cggacgcgcc
     2401 gggcgtgttc ggcaacgaga caaacatcct cgccggcagc ggctcgcagc tcaccaacct
     2461 cgcgcgctgg ggcgactaca gcacactgag cgttgacccg gttgacggct gctcgatggt
     2521 cttcacgacc gagtacctgc cttcggacgg caccttcaac tggacgacct acatctactc
     2581 gttcaagctg agcacctgcc agtaaagctc aggtattaaa cagacaaagg ggggccgcga
     2641 gtcgcactcg cggccccctc cctatttttc tcagcccgcc cgtcaaccct taatggctat
     2701 ccccgcgcag cagccagaaa atcgccgcgc cgaagaagcc gcaccctagc gagtcgctca
     2761 cagtccagta gagcggcatc cccgacgtgt agtcaatcac gaagaagacg ggcgcggcca
     2821 gaaggaaaga gaggccgttg agccagatga gagggcggaa cctctccacg tccgaggcga
     2881 gcacgaagag ccctacgccg tgcatgccgt aggtgtagga cgcctgccgt atgaggaaca
     2941 tgaggacggc gccttcg
//
LOCUS       DASPKR010000586         2181 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_477633, whole genome shotgun sequence.
ACCESSION   DASPKR010000586 DASPKR010000000
VERSION     DASPKR010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_477633"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..565)
                     /gene="pyrF"
                     /locus_tag="VD968_15745"
     CDS             complement(<1..565)
                     /gene="pyrF"
                     /locus_tag="VD968_15745"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF001273.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HYE15895.1"
                     /translation="MTIPANAKAKEKLIVALDVETADEAKRVFAELRGEAGMFKVGSQ
                     LFTAAGPELVRSLVSAGARVFLDLKFHDIPNTVAAACREAVRLGVSLLNVHAAGGSEM
                     MRRAAEAVSEEAARLGVGRPSLIAVTVLTSMDAAALAESGVEANHVEQQVARLARLAA
                     ESGLDGVVASPHEIRAVREAAGRGGFLV"
     gene            complement(578..1696)
                     /locus_tag="VD968_15750"
     CDS             complement(578..1696)
                     /locus_tag="VD968_15750"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: protein motif:HMM:NF003645.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006222 - UMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HYE15896.1"
                     /translation="MLYRSILRPLLFKLPPETAHEAAVKALRLGLGAGPLRRAARSRF
                     ARSPFGELRRFGLSFENPVGLAAGFDKNGVAARELAALGFGFVEVGTVTRLAQPGNPR
                     PRLFRLPLDRALVNRQGFNNEGAAALAERLRGGRPDCVLGVNIGKSRVVEIEEAAADY
                     LASFELVYEHADYVTVNVSSPNTPGLRELQRADRLSALLGALSGRNEELSRARGGPPL
                     PLLVKVAPDLGEGELELVVDAARRAGVRGIIATNTTTSREGLRTPREKVAAFGEGGLS
                     GAPLAQRSTRTVAQLRRLTRGELEIVGVGGIFDARGAWEKICAGASLVQLYTGFIYEG
                     AGVARDINDGLAEILAREGFRNLDDAVGCRADELAAAP"
     gene            complement(1815..>2181)
                     /locus_tag="VD968_15755"
     CDS             complement(1815..>2181)
                     /locus_tag="VD968_15755"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYE15897.1"
                     /translation="NTFSLPQKSGFRRSFAYAGESVDRGFSVLVFPEGTRTKHGRLHP
                     FMRGTGLLASQLAVPVVPVRIGGLYELKRSGRRGFAFPNTVSVTFGEPVSYARDEDPA
                     RITADLERRVRELGGQETE"
BASE COUNT          349 a          743 c          773 g          316 t
ORIGIN      
        1 cgacgaggaa gccgccccgg cccgccgcct cgcggacggc gcgaatctcg tgcggcgacg
       61 cgacgacgcc gtcaaggccg ctctcggccg cgaggcgcgc gaggcgcgcg acctgctgtt
      121 cgacatggtt cgcctcgact cccgattctg cgagcgcggc ggcgtccatg ctcgtgagca
      181 ccgtgacggc gatcaggctc ggccgcccga cgccgagccg cgcggcctct tccgagacgg
      241 cctcggcggc gcggcgcatc atctcggagc cgccggccgc gtggacgttt aagagcgaga
      301 cgcctaggcg cacggcctcg cggcacgcgg cggccacggt gttcgggatg tcgtggaact
      361 tgaggtcgag gaagacgcgc gcgccagcag agacgagcga gcgcacaagc tcagggcccg
      421 cggccgtgaa gagctgcgag ccgaccttga acatgccggc ctcgccgcga agctccgcga
      481 agacgcgctt cgcctcgtcg gccgtctcca cgtcgagcgc gacaatcagc ttctctttcg
      541 cctttgcgtt cgcaggaatc gtcataagcc taaaacgtca gggcgcggcc gcaagctcgt
      601 cggcgcggca gcccacggcg tcgtcaagat tgcggaagcc ctcgcgggcc agtatctccg
      661 cgagcccatc gtttatgtcg cgcgcgacgc cggccccctc gtagataaag cccgtgtaga
      721 gttggacgag gctcgcgccg gcgcagattt tctcccaggc gccgcgtgcg tcgaagatgc
      781 cgccgacgcc gactatctcc agctcgccgc gcgtgagccg ccgtagctga gcgactgtgc
      841 gagtcgaacg ctgcgctaac ggcgcgccgc tcaaaccgcc ctcgccgaag gccgcgacct
      901 tctcgcgcgg cgtgcgcagg ccctcgcgcg aagtggtcgt gttcgtcgct atgatgccgc
      961 gaacgccggc gcggcgcgcc gcgtcaacta ccaactcgag ctcgccctcg ccgaggtcgg
     1021 gcgcaacctt gacgagcagg gggagcggcg gcccgcctcg cgctcgggac aactcctcgt
     1081 tgcgcccgct gagcgcgccg agcagcgccg acaaacgatc cgcgcgctga agctcccgca
     1141 gccccggcgt gttcggcgag cttacgttca ctgtcacgta gtcggcgtgc tcataaacca
     1201 gctcgaagct tgcgaggtag tcggccgcgg cctcctcaat ctcgacgacg cggctcttgc
     1261 cgatgttgac gccgagcaca cagtcaggtc tgcccccgcg gagcctttcg gcgagcgccg
     1321 cggcgccctc gttgttgaag ccctgccggt tgacgagcgc gcggtcgagg ggcagccgga
     1381 acaggcgcgg ccgcgggttg ccgggttgcg ccagccgcgt caccgtccca acttcaacga
     1441 agccgaagcc gagcgccgcg agttcgcgcg cagccacccc gttcttgtca aagcccgcgg
     1501 cgaggccgac ggggttctcg aagctcaggc cgaagcgccg aagctctccg aagggagagc
     1561 gcgcgaagcg cgagcgcgca gcgcgcctga gcggccccgc gccgagcccg agcctcagag
     1621 ccttaacggc cgcttcgtgc gccgtctccg gcgggagctt gaagagcagg gggcgcagaa
     1681 tcgagcgata gagcatcggc cgtgccggtc gtctcctcgc gaaccgaata aaggggagtg
     1741 ctaaaagccg gggctgagcc tagcagaggg gcggaaaagc tgtcaaaaga agggagtcag
     1801 aagaggaggg cgcttcattc tgtctcctga ccccctaact ctctgactct acgttcgagg
     1861 tcggcggtga tgcgtgccgg gtcttcgtcg cgggcgtatg agacgggctc gccgaaggtg
     1921 acgctgacgg tgttggggaa ggcgaagccg cggcggccgc tcctcttcag ctcgtagagc
     1981 ccgccgatgc ggacggggac gacggggacg gcgagctgcg aggcgagcag gcccgtgccg
     2041 cgcatgaatg ggtgtaggcg gccgtgcttc gtgcgcgtgc cttcggggaa gacgaggacg
     2101 ctgaagccgc ggtcaacgct ctcgcccgcg tatgcgaagc tgcggcggaa gccgctcttc
     2161 tgcgggagcg agaaggtgtt g
//
LOCUS       DASPKR010000587         2258 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_221226, whole genome shotgun sequence.
ACCESSION   DASPKR010000587 DASPKR010000000
VERSION     DASPKR010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221226"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..684)
                     /locus_tag="VD968_15760"
     CDS             complement(<1..684)
                     /locus_tag="VD968_15760"
                     /inference="COORDINATES: protein motif:HMM:NF012797.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HYE15898.1"
                     /translation="MTTGTITSRKNPLVQTARAVRDGRDRRLVFCEGVRLCEEAVGAG
                     LDFESAVFTESLEEGERGTRLLEALRRVCPRVLSVTEDVLESLSGTKTSQGIVALARR
                     PETGPALLERAAGVPLFVIIHRANNPSNAGAMLRVAEAAGASGVISTKGSTDLFAPAA
                     LRGSMGSAFRLPVWDGATFEEALQWCARRGALTVATSAGAAALHTEIDWTIPRAVIVG
                     PEAEGLSEEE"
     gene            complement(684..1637)
                     /locus_tag="VD968_15765"
     CDS             complement(684..1637)
                     /locus_tag="VD968_15765"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HYE15899.1"
                     /translation="MSTTAEPLRDDSPAPTEAGLERGDFAPPGAPLPPASLVVATYNI
                     RYAVGHRLISGGLMRRAGLSFPGRRPTLVARNIAKAALAFTDGRRMPRADLIALQEAD
                     RGTVRGGRQHVARELSRRLGMSYVRAFAPTPADEEPKARQWYLDFEERIRKGEEGDTG
                     VALLSRLPLSGVQRVELPWAECAWRPRLAVAAGVAFAGRSLQVLNAHVDPHAGVEEQL
                     AQLRALLTHVGDEGAMTVLLGDFNTLSRRSCVAARAMLESLGYETPLPTGTGTWRAGP
                     LRLHADWIFVRALRVRRWGVARGLRVSDHWPVWAEIEPTSE"
     gene            1713..2075
                     /locus_tag="VD968_15770"
     CDS             1713..2075
                     /locus_tag="VD968_15770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15900.1"
                     /translation="MNRRVLAAVGDLFFASKIRGTAEALNVSVDFARTADSLFDAAKI
                     DVPSLIILDLQSTSADAVTLAARLKADERLARVPLVGFFSHVETELQRRAEDAGVDYV
                     MPRSLFTRRLPEILRGEL"
BASE COUNT          343 a          783 c          784 g          348 t
ORIGIN      
        1 ctcctcttcg gagaggcctt cggcctcggg gccgacgatg acggcgcgcg gaatcgtcca
       61 gtcaatctcc gtgtgaaggg cggcggcgcc ggcgctcgtg gcgacggtga gggcgccgcg
      121 gcgcgcgcac cactgaagcg cctcttcgaa cgtcgcgcca tcccagacgg gcaggcggaa
      181 ggcggagccc atcgagccgc gaagcgccgc gggggcgaag aggtctgtcg agcccttcgt
      241 cgagatgacc ccgcttgcgc ccgccgcctc cgcgacccgg agcatagcgc ccgcgttcga
      301 ggggttgttc gcgcggtgga tgatgacgaa gagaggcacg cccgcggcgc gctcaagcaa
      361 ggcaggcccg gtctcgggcc ttcgggcgag ggcgactatg ccctgcgagg tcttcgtccc
      421 cgagagggat tcgagcacgt cttctgtcac gctcagcacg cgagggcaga cgcgcctgag
      481 cgcttcgagg agccgcgtgc cgcgctcgcc ctcttcgagc gattcggtga agactgcgga
      541 ctcgaagtcg agcccggcgc ctacagcctc ttcgcatagg cgcacgccct cgcagaagac
      601 gaggcggcgg tcgcgcccgt cgcgcacggc gcgcgccgtc tgcacgagcg ggttcttacg
      661 gctcgttatc gtccctgtcg tcactattcg gaagtcggct ctatttcggc ccagacgggc
      721 cagtggtcag agacgcgcag gccccgcgcc acgccccagc ggcggacgcg caaggcccgc
      781 acgaaaatcc agtctgcgtg aaggcgcagg ggcccagcgc gccatgtccc cgtccccgtc
      841 ggcagcggcg tctcgtagcc gagggattcg agcatggcgc gcgccgccac gcacgacctg
      901 cgcgagagag tattgaagtc accgagcagc acggtcatcg cgccttcgtc gccgacgtgc
      961 gtgagcagcg cccgtagctg cgcgagctgc tcttcgacgc ctgcgtgcgg gtcaacgtgg
     1021 gcgttgagga cttgaagcga gcggcccgcg aaggcgactc cggccgcgac cgcgagccgc
     1081 ggccgccaag cgcactcggc ccacggcagc tcgacgcgct gaacgcctga gagcggcagc
     1141 cggctgagca gcgcgacgcc cgtgtcgccc tcctcgccct ttcgtatgcg ctcctcgaag
     1201 tcgagatacc actgccgcgc cttcggctct tcgtcggccg gcgtcggcgc gaacgcgcgc
     1261 acgtagctca tccctagccg ccgtgacagc tcgcgggcga cgtgctgccg gcccccgcgc
     1321 acagtcccgc ggtcggcctc ctgaagggca attaagtcgg cgcgcggcat ccttcgcccg
     1381 tcggtgaagg cgagcgccgc cttcgcgatg ttgcgcgcga caagggttgg gcggcggccc
     1441 ggaaagctca ggccagcgcg gcgcatgagg ccgccggaga tgagccggtg gccgacggcg
     1501 tagcggatgt tataagttgc tactacgagg ctggcggggg ggagcggcgc gccgggcggc
     1561 gcgaagtcgc cgcgctcaag gcccgcctct gtcggggcgg gggagtcgtc tcggaggggc
     1621 tctgccgtcg tgctcatccg taggctttac gcggcgcgct ctcgcggggc aaaatctgaa
     1681 gccgaactcg tcacagcgaa aggggattat aaatgaatcg tcgcgtgctc gccgcggtcg
     1741 gcgacctttt cttcgcctcg aagattcgcg gcacggccga ggcgctgaac gtctcggttg
     1801 acttcgcccg aacggccgac tccctattcg acgcggcgaa gatcgacgtc ccctcgctca
     1861 tcatactcga cctgcaatca acctcggccg acgcggtcac actcgccgcg aggctcaagg
     1921 ccgacgaacg gctcgcgcgc gtccccctgg tcggcttctt ctcccacgtc gagactgagc
     1981 ttcagcggcg agccgaagac gcgggggttg actacgtcat gccgcgctcg ctcttcacac
     2041 ggcggctccc cgaaatcctg cgcggcgaat tgtagaaaga gactaaagaa gctgggaggg
     2101 cgggcgaccc gcacggccgc tcgccctcct ctttttaact tcggtgttat tttagccgac
     2161 aggcgccggc gcgatgactt cgtggatggc gcgcacttcg gcgaccatcc gctcgaactg
     2221 ctcgggcgtg agcgcctgcg ctccgtcgga gcgcgccc
//
LOCUS       DASPKR010000588        10172 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1640756, whole genome shotgun sequence.
ACCESSION   DASPKR010000588 DASPKR010000000
VERSION     DASPKR010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10172)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10172
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1640756"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..584)
                     /locus_tag="VD968_15775"
     CDS             complement(<1..584)
                     /locus_tag="VD968_15775"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYE15901.1"
                     /translation="MTPEQQKTARRLSVVVPVYNEEATLESVVEKLLRIPQLLEVIVV
                     DDCSRDRTPEVTRRLSERHPERVRVSRHEKNQGKTGALKTGFAMTRGDIVIVQDADLE
                     YDPTEIPLVIQPIIENRADVVFGSRFLVRKATRVLYFYHYLANKGLTFISNVLTNLNM
                     TDVETGYKAFRGDIIRNMVITSSGFGFEVEVTAKL"
     gene            772..1695
                     /locus_tag="VD968_15780"
     CDS             772..1695
                     /locus_tag="VD968_15780"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE15902.1"
                     /translation="MSSTTRGTSGGLGTAAPAPAGEAPPQLLPEKPLVVIESRRARAG
                     AGLRDLWAYRELLYFLTWRDVKVRYKQTFLGVAWAVLQPVFMMLIFTLFFGRLAGIPS
                     DGVPYPLFAYAGLLPWTFFSTAVTTGGNSMVSSANLITKVYFPRLIVPSAAVAAALVD
                     FAIAFAVLGLLMAYYGVPPGAGALMLPVLALLVALLALGFGTWMAALNVKYRDIKFAL
                     PFLIQVWFFASPIIYPVSFVTGKVADPERWRLVMALNPMTGIVEGFRSALFGRPFDWL
                     TLSVSAAVTLALLAYGVVTFRRMEKNFADIV"
     gene            1705..2979
                     /locus_tag="VD968_15785"
     CDS             1705..2979
                     /locus_tag="VD968_15785"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE15903.1"
                     /translation="MRPIIKVEGLGKEYRVGGAQAAYSTLREAVSDAVMRPLGRLRGR
                     GEGGPARGDGDRFWALKDVTFDVMPGEVVGIVGRNGAGKSTLLKILSRITEPSEGRVE
                     LYGRVGSLLEVGTGFHPELTGRENIFLNGAILGMRKAEIERKFDEIVRFAEIERFIDT
                     PVKRYSSGMYVRLAFAVAAHLEPEILIVDEVLAVGDAAFQKKCLGKMGEVARGGRTVL
                     FVSHNMGAVNQLCTRAVHVAGGRVKDIGPTRQVVTDYLSELFRGGGEDLEELRQLRTG
                     AGVRFRRIELASADGATVPFDRPVEYLLDVESDVDMEGLSIGSTVFSVTTGHSVGSLI
                     TREKFDVEAGRRVRLRLRVSGANLAPGSYYAGFSIGRGGDAGARTDFDAVVGRPAFQV
                     LPLSDESDPVANWHPSWGDVVFRDTQLSVEEA"
     gene            3000..3437
                     /locus_tag="VD968_15790"
     CDS             3000..3437
                     /locus_tag="VD968_15790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15904.1"
                     /translation="MLRERLKAAAAALGDFQTRVKVGALSLLVLTALLNNLSNFAAVV
                     RHPPQPNMEDEVARHERRLEELRRILPRRGVVGYVTDATDPNEETKRYYMTQYALAPL
                     VVVRGAGHELVVGDFKNPSPEVGGLAVRRDFGGGLLLLGGEGR"
     gene            3434..4846
                     /locus_tag="VD968_15795"
     CDS             3434..4846
                     /locus_tag="VD968_15795"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYE15905.1"
                     /translation="MTPFWLAASALLSFAVGLLVVLLLWPGAPARHLAVKIFLAAGLG
                     QGVTSCVAFLYLLANGRLDRFYYTSELFALAALLAGLLFKLRRRREPAAPPVEGKVGQ
                     AGRGWLAVAFYAAAAAALGAVLIDVWRMPYGGGWDAWAIYNLRARAIFRGGAEWREGF
                     SALIGWSHPDYPLLLPLSVARAWVYAGRETTAAPAMLGWLFTAATVGLLSSSVAALRG
                     RSQGYLAGILLLGFTFFIAHGSSQYADVPLMFFYTAAVVLFALAGEAGGEGGRGGWLV
                     LAGLAAGMAAWAKNEGALFIVAAGAAHLAVAAREGGLKRYFGELRFVLTGLLPVLICV
                     FYFKARIAPPSELVEAMAGQTALRKLADPSRHLLIAREFARRFLYYSGRGVNLAYVLL
                     IYLACVGLGRGGRRRGAAFGAITLALMLGGYYFVYLTTPYELAWHVKFSLDRVLLQLW
                     PSLVFVFFLVAATPEETIAR"
     gene            4929..5888
                     /locus_tag="VD968_15800"
     CDS             4929..5888
                     /locus_tag="VD968_15800"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE15906.1"
                     /translation="MSRFNPLDHPVCLSRPLRLAPSAWTEHVPFAMWLVGVLRPRVLV
                     ELGTFYGVSYCAFCQAVREVGCDTKCYAVDTWRGDPQSGFFGGEVLADLRAHHDPLYG
                     GFSRLVQSDFDEAAAHFAPGSVDLLHIDGFHTYEAVSHDFETWLPKMSGRGVVLFHDT
                     NVRERDFGVWRLWGELKERYPSYEVAYGHGLGVIATGGEFPDEMAFLFRSTEEELRPV
                     REYFYQLGVRLEVAHELESLKAEGRERERAEAVRRERMRREHPLLSRASNLFQVAADK
                     GLGGALRLGREKLAGKGSGSAEGAGDEPPRPLGAAQQAPQANS"
     gene            5885..6883
                     /locus_tag="VD968_15805"
     CDS             5885..6883
                     /locus_tag="VD968_15805"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYE15907.1"
                     /translation="MSAGAGRGAEGSARPRVTVVTPLYNSSAFIAATLDSLRAQTFGD
                     WESILVDDGSTDATASVVEPYIATDARFRLIRQENRGIAGARNTAIREAAGEWVCLLD
                     HDDRWLPEKLEKQLSYAAAHGLDIVCTDALIVTESGRWVYSRGFPEVAAEVARAARDD
                     SVDVLGQLIKLDFLCASSVMIRRRLFDERGLLDPDAVPADDYDMWLRCMPGARLGFLS
                     EPLIEYVVHAGNFSKHEALMIEKTVSVLQRHRRRLSGDARRRRQFDESLAVQLGLLYE
                     KLAARGSRLRAMRRVAALSKGGPGLLGLVRFAVWSPLAARARNSARYRLGLLLRKA"
     gene            6902..8083
                     /locus_tag="VD968_15810"
     CDS             6902..8083
                     /locus_tag="VD968_15810"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE15908.1"
                     /translation="MRILFVALPDSIHAARWINQVTGRGWDVHLFPAYEAPPHAELRE
                     LTVYGFSSARPSGLHESVRLRGLWPFASAHHRVKTLAGRLAPRFAERSGWLARLVRRL
                     KPDVIHSMEFQRAGYLTLDAKRRFAGRFPAWIATNWGSDVYLFGRLAEHRERVRGVLA
                     ECDFYHSECERDVRLAREHGFKGEALPVLPGGGGFDLEEMRRFRQPGPTSARRVVALK
                     GYQNWAGRALFGLRALELCADALRGYTVAVHLAEPDTAIAAELFAQRTGLPVEILPPG
                     RPHEEILRLHGRARVSVGLSISDAASTSALEAMVMGSFPVQSETSCLCEWARDGETAL
                     LVQPEDPEGVAAAVRRALADDALVDRAAELNARTVAERLDRAVVEPRVVEMYERVVSS
                     Q"
     gene            8176..9102
                     /locus_tag="VD968_15815"
     CDS             8176..9102
                     /locus_tag="VD968_15815"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE15909.1"
                     /translation="MKRLLRPLLAPVQRRLVRHLLGNFDYWQARGVHVVPVHFYQPIP
                     DTRELGSAPWSGRSELPGVSMNEGLQLELLSRFSAEYKAEYDAFPRERALEPHRYFVN
                     NGAFESVDGEVLYCMIRHFRPRRIFEVGSGNSTYLSAQAVVKNRDETGRECELVAFEP
                     YPNETLRSGFPGLARLVEAKAQDIPLSKFAELDDGDILFIDSSHVLKIGSDVQYLYLE
                     VLPRLRPGVVVHVHDIFLPEEYPRKWVMEQQTFWNEQYLLQAFLAFNDAFDVHWAGSY
                     MHLKHPEKLEAAFASYDRDTRRPGSFWMRRRA"
     gene            9227..>10172
                     /locus_tag="VD968_15820"
     CDS             9227..>10172
                     /locus_tag="VD968_15820"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYE15910.1"
                     /translation="MRILVTGGLGIVGSGLVRELRSRGHHTVSCDLHHQPDEVGFSLR
                     TDVETPGYARVDVGEFRQIERVFDRLGPFDYVFHCAAEFGRWNGEDFYETLWRTNAVG
                     TKNIIRLQERLKFRLIHFSSSEVYGDWPELMVESVMDEHEIKQMNDYAMTKWVNEMQV
                     RNSAIQYGTESVVVRLFNTYGPGEYYSPYRSVNCRFLYCALNGLPFTVFRGHYRTSTF
                     LADTVRTAANITENFRAGETYNIGGVNHHSIEELAEVVLKVTGADPKLVEHRDSEILT
                     TKIKRVDISKAVRDLGHKNSFGLEEGMRITADWMRDVYN"
BASE COUNT         1538 a         3367 c         3487 g         1780 t
ORIGIN      
        1 agcttcgcgg tgacctcgac ctcgaagccg aagcccgagg aggttatcac catgttgcgg
       61 atgatgtcgc cgcggaacgc cttatagccc gtctcaacgt ccgtcatgtt caggttcgtc
      121 aggacgttcg agatgaaggt caggcccttg ttagcgaggt agtggtagaa gtagaggacg
      181 cgcgttgcct tccgaacgag gaagcgcgag ccgaagacta cgtccgcacg gttctctatg
      241 atgggctgga tgacgagcgg aatctcggtc gggtcgtact ccaagtcggc gtcctgcacg
      301 atgacgatgt cgccgcgcgt catggcgaac ccggtcttta gggcgccggt cttgccctga
      361 ttcttctcgt ggcgcgagac gcggacgcgc tcggggtggc gctcggagag gcggcgcgtg
      421 acctccggcg tcctgtcgcg cgagcagtcg tcaacgacga tgacttcgag gagctgcggt
      481 atgcgcagca gcttctcgac gaccgactcg agcgtggcct cctcgttata gacggggacg
      541 acgacggaca ggcgccgcgc cgtcttttgt tgctcaggcg tcatgctgtt cctcttgtgc
      601 gcctcgcgcg aagggtcttg cgcccggcgg gcggcgcaaa cgaagggcga gtataggttt
      661 ggccctaaaa ggtgtcaaat tgcggccggc cggcgcaggc gggcttgctt gacgctcccg
      721 aagcggcgcg gatagacttg ccgccagcct ctttcgtcaa gcggaagctt aatgagctca
      781 acaacgaggg gaacgagcgg cgggctggga accgccgccc ccgcgccggc cggcgaggcg
      841 ccgccgcaac tgctccccga aaaaccactg gtcgtcatag agtcgcgccg ggcccgggcc
      901 ggcgcggggc tcagagacct atgggcctac cgcgagctgc tctacttcct gacgtggcgc
      961 gacgtgaagg ttcgctacaa gcagaccttc ctgggcgtcg cgtgggcggt gttgcagccc
     1021 gtcttcatga tgctcatctt cacgctcttc ttcgggaggc tggcgggcat cccctcggac
     1081 ggcgtgccgt acccgctctt cgcatacgcg ggcctgctgc cgtggacttt cttctccacg
     1141 gccgtcacga cgggcggcaa cagcatggtc tcgagcgcga acctcatcac caaggtctat
     1201 ttcccgcgcc tcatagtccc gtcggcggcg gtcgcggccg cgctcgttga cttcgcgatt
     1261 gccttcgccg tgctcggcct gctgatggcc tactacggcg tgccgccggg agccggcgcg
     1321 ctcatgctgc ccgtgctcgc cctgctcgta gcgctgctcg cgctcggctt cgggacgtgg
     1381 atggcggccc tgaacgtcaa gtaccgcgac ataaagttcg cgctgccgtt cctcatacag
     1441 gtctggttct tcgcctcgcc cattatctac cccgtaagct tcgtgacggg caaggtcgca
     1501 gaccccgagc gctggcgcct cgtcatggct ctgaacccga tgacgggaat agtcgagggc
     1561 ttccgctcgg cgctcttcgg caggcccttc gactggctga cgctctcggt ctcggcggcc
     1621 gtgacgctcg cgctcctcgc ctacggcgtc gtcacgttcc gccggatgga gaagaacttc
     1681 gccgacatag tttaaagacg cgcgatgcgg cccatcataa aagtcgaggg gttggggaag
     1741 gagtaccgag taggcggcgc gcaggccgcc tactcgacgc tgcgcgaggc cgtgagcgac
     1801 gccgtcatga ggccgctcgg ccgactgcgg ggccgcggcg aaggcggccc ggcgcggggc
     1861 gacggcgata ggttctgggc tcttaaagac gttaccttcg acgtgatgcc gggcgaggtc
     1921 gtcggcatcg tcggccgcaa cggcgcgggc aagtcaacgc tccttaaaat cctctcgcgc
     1981 atcacggagc cgagcgaggg gcgcgtcgag ctttacggcc gcgtgggctc cttgctcgaa
     2041 gtcggcacgg gcttccaccc ggagcttacg gggcgcgaga acatcttcct caacggcgcc
     2101 atcctcggca tgaggaaagc ggagatcgag cgcaagttcg acgagattgt gcgcttcgcc
     2161 gagatagaga gattcattga cacgcccgtc aagcgctact cctcggggat gtacgtccgt
     2221 ctcgccttcg ccgtcgccgc gcacctggag ccggagattc taatcgttga cgaggtgctg
     2281 gccgtgggcg acgccgcctt ccagaagaag tgcctcggca agatgggcga ggtggcgcgc
     2341 ggcggccgca cggtgctctt cgtctcgcac aacatggggg ccgtcaacca gctctgcacg
     2401 cgcgcagtcc acgtagcggg cgggcgcgtc aaagacatcg gcccgacccg ccaggtcgtc
     2461 accgactacc tttcggagct gttccgcggc ggcggcgaag acctcgaaga gcttcggcag
     2521 ttgcgcacgg gcgcgggcgt aaggttcaga cgcatcgagc tggcctcggc cgacggcgcg
     2581 accgtgccgt tcgaccggcc cgtagagtac ctcctcgacg tggagtccga cgttgacatg
     2641 gagggcctga gcatcggctc gaccgtcttc agcgtgacga cgggccactc ggtcgggagc
     2701 ctgataacca gggagaagtt cgacgtggag gcgggccgcc gcgtccgact gcggctgcgc
     2761 gtctcgggcg cgaacctcgc ccccggctcc tactacgccg gcttcagcat agggcgcggc
     2821 ggcgacgcgg gcgcgcgaac cgacttcgac gcagtcgtgg gccgccccgc cttccaggtg
     2881 cttccccttt cggacgagag cgaccccgta gccaactggc acccgtcctg gggcgacgtt
     2941 gtcttccgcg acactcaact ctccgtcgaa gaggcttaag ggcgcgcgcc cgttgaccca
     3001 tgctccgtga gcgtctcaag gcggccgcgg ccgcgctcgg cgacttccag acgcgcgtta
     3061 aggtcggcgc gctctcgctg ctcgtgttga cggcgctgct gaacaacctc tcgaacttcg
     3121 ccgcggtcgt ccgccacccg ccgcagccga acatggagga cgaggtcgcg cggcacgagc
     3181 gccggctcga agagctgcgg aggattttgc cgaggcgcgg cgtggtcggc tacgtgacgg
     3241 acgcgacaga ccctaacgag gagacgaagc gctactacat gacgcagtac gcgctcgcgc
     3301 cgctcgtggt cgtgcgcggg gccgggcacg agctggtcgt cggcgacttt aagaaccctt
     3361 cgccggaggt gggggggctg gccgtgcggc gggacttcgg cgggggcctg ctcctgctcg
     3421 gcggggaggg cagatgacgc ccttctggct cgccgcctcg gcgcttcttt cgttcgccgt
     3481 cggcctcctc gtagttctgc tcctgtggcc gggcgcgccg gcccgccacc tcgccgtcaa
     3541 aatctttctc gccgccgggc tcgggcaggg cgtcacgtcc tgcgtagcct tcctctacct
     3601 gctggcgaac gggcggctcg acaggttcta ctacacgtcg gagctgttcg ccctcgccgc
     3661 tctgctcgcg gggctgctgt tcaagttgag aaggcgcaga gagcctgccg cgccgccggt
     3721 cgagggaaag gtcgggcagg cggggcgcgg gtggctggcc gtcgcttttt acgcggccgc
     3781 ggccgccgcg ctcggggccg tgctgattga cgtgtggcgc atgccttacg gcggcggctg
     3841 ggacgcgtgg gccatctaca acctgcgcgc gcgcgcgatt ttccgtggcg gggccgagtg
     3901 gcgcgagggc ttctcggcgc tcatcgggtg gtcgcacccg gactacccgc tgctcctgcc
     3961 cctgagcgtc gcgcgcgcgt gggtgtacgc gggccgggag acgacggccg cgcccgcgat
     4021 gctcgggtgg ctcttcacgg cggcgacggt gggcttgctg tcatcctcgg tcgcggcgct
     4081 gcgcgggcgc tcgcaaggct atctggccgg catattgctg ctcggcttca cctttttcat
     4141 agcgcacggg agctcgcagt acgccgacgt gccgctgatg tttttttaca cggcggccgt
     4201 cgtgctcttc gcgctcgcgg gcgaagcggg tggcgagggc gggcgcgggg gctggctcgt
     4261 gctcgcgggg ctagcggcgg ggatggcggc gtgggcgaag aacgagggcg cgctgttcat
     4321 cgtcgcggcg ggcgcggcgc acctcgccgt cgccgcgagg gagggcgggc tgaagcgtta
     4381 cttcggtgag ctgcggttcg tgctgacggg gcttctgccc gtgctcatct gcgtcttcta
     4441 cttcaaggcg cgtatcgcgc cgccgagcga gctggtcgag gcgatggcgg ggcagacggc
     4501 gctgcggaag ctcgccgacc cctcgcgcca cctcctcatc gcgcgcgagt tcgcccgccg
     4561 cttcctttac tacagcggcc gcggcgtcaa cctcgcatac gtgctcctca tttacctcgc
     4621 gtgcgtgggt ctcggccgag gaggccggcg ccggggcgcc gcgttcgggg caattacgct
     4681 cgcgctcatg ctcggcggct actacttcgt ctatctgacg acgccctacg agctggcctg
     4741 gcacgtcaag ttctcgttag accgcgtgct gctacagctc tggccgagcc tcgtcttcgt
     4801 cttcttcctc gtcgccgcga cgccggaaga aaccatcgcc cgttgacgag agcggcgctt
     4861 gtccggggtc gttttgagtt tgcgcggcgc gcggttagaa ttctccggcc aaacctggag
     4921 caaaagcctt gagcagattc aacccgctcg accacccggt ctgcctctcg cgcccgttga
     4981 ggctcgcgcc ttcggcgtgg actgagcacg tgcccttcgc gatgtggctc gtcggcgtgc
     5041 tgcggccgcg cgtgctcgtc gagctcggga ctttctacgg cgtatcgtac tgcgccttct
     5101 gccaggccgt gcgcgaggtg ggctgcgata cgaagtgcta cgcggttgac acctggcgcg
     5161 gcgacccgca gagcggcttc ttcggcgggg aggtgctcgc agacctccga gcccaccacg
     5221 acccgctcta cggtggcttc tcgcgcctcg tgcagagcga cttcgacgag gccgccgcgc
     5281 acttcgcgcc cggctcggtt gatctgctcc acatagacgg cttccacaca tacgaggccg
     5341 tcagccacga cttcgagacg tggctgccga agatgagcgg ccgcggcgtc gtgctcttcc
     5401 acgacacgaa cgtgcgcgag cgcgacttcg gcgtgtggcg gctgtggggc gagcttaaag
     5461 agagataccc gagctacgag gtcgcctacg gccacggcct cggcgtcata gcgacgggcg
     5521 gagagttccc cgacgagatg gccttcctct tccgctcgac ggaggaggag ctgcggcccg
     5581 tgcgcgaata cttttaccag ctcggcgtgc ggctcgaagt cgcgcacgag ctggagtcgc
     5641 taaaggcgga ggggcgcgag cgcgagcgcg ccgaggccgt gcgccgcgag cgcatgcgcc
     5701 gcgagcaccc cctgctctcg cgcgcgagca acctgtttca agtggcggcg gacaagggcc
     5761 tcgggggcgc cctgcggctc gggcgcgaga agctcgccgg gaaggggagc ggttcggccg
     5821 agggcgcggg cgacgagccc ccgcggccgc tcggggcggc gcagcaggcg ccgcaggcga
     5881 actcttgagc gcgggggcgg ggcgcggcgc ggagggctct gcccgtccga gggtgacggt
     5941 cgtcacgccg ctctacaact cgtcggcctt catcgccgcc acgctcgact ctctgcgcgc
     6001 gcagaccttc ggcgactggg aatcaatact cgttgacgac ggctcgaccg acgcgaccgc
     6061 ctcagtcgtc gagccttaca tcgcgacgga cgcgcgcttc cgcctcatac ggcaggagaa
     6121 ccgcgggata gccggcgcgc gcaacaccgc gatacgcgag gccgccggcg agtgggtctg
     6181 cctgctagac cacgacgacc gctggctgcc ggagaagttg gagaagcaac tgtcttacgc
     6241 cgcggcgcac gggctcgaca tcgtctgcac agacgcttta atcgtcacgg agtcggggcg
     6301 gtgggtttac agccggggct tccccgaggt cgcggccgag gtcgcgcgcg ccgcccgtga
     6361 cgattcagtt gacgtgctcg gccagctaat caagctcgac ttcctctgcg cctcgtccgt
     6421 gatgattcgc cgccgcctct tcgacgagcg cggcctgctc gaccccgacg ccgtgccggc
     6481 cgacgactac gacatgtggc tgcgctgcat gccgggggcg cggcttggtt tcctgagcga
     6541 gcctctcatc gagtacgtcg tccacgccgg caacttctcg aagcacgagg cgctgatgat
     6601 agagaagacc gtgagcgtgc ttcagcgcca caggcgcagg ctctcgggcg acgcgcggcg
     6661 gaggcgccag ttcgacgagt cgctagccgt gcagctcggc ctgctctacg agaagctcgc
     6721 ggcgcgcggc tcccgcctgc gcgcgatgcg gcgcgtcgcg gcgctctcga agggcggccc
     6781 cggccttctg ggcctcgtgc gcttcgccgt atggtcgccg ctcgccgcgc gcgcccgcaa
     6841 ctcggcgcgc taccgcctcg gcctgctgct tcgcaaagcc tgacgagccg gagattgccc
     6901 cttgcggatt ctcttcgtgg ccctgccgga cagcatccac gccgcgcgct ggataaacca
     6961 ggtcacgggg cgcggctggg acgttcacct cttcccggcc tacgaggcgc cgccccacgc
     7021 cgagttgcgc gaactgacgg tttacggctt ctcgtctgcg cggccctcgg gtttgcacga
     7081 gagcgtccgt ctccgcgggc tctggccgtt cgcgagcgcg caccacaggg taaagactct
     7141 tgcggggagg ctcgcgcctc gcttcgccga gcgctcgggg tggctggcgc ggctcgtgcg
     7201 caggcttaag ccggacgtga ttcactcgat ggagtttcag cgcgccggct acctgacgct
     7261 cgacgcgaag aggcgcttcg cgggccgctt ccccgcgtgg atagcgacga actgggggag
     7321 cgacgtttac ctcttcggcc ggctcgcgga gcaccgcgag cgcgtgcgcg gcgtgctcgc
     7381 cgagtgcgac ttctaccaca gcgagtgcga gcgcgacgtt cggctagcgc gcgagcacgg
     7441 cttcaagggc gaggctctcc ccgtgcttcc gggcgggggc ggcttcgacc tcgaagaaat
     7501 gcggaggttc cgccagccgg ggccgacctc tgcgcgccgc gtggtcgcct tgaagggcta
     7561 ccagaactgg gcgggccgcg ctctcttcgg cctgcgcgcg ctcgagcttt gcgccgacgc
     7621 gctgcgcggc tacacggtgg ccgtgcactt ggcggagccg gacacggcga tagccgcgga
     7681 gctgttcgcg cagaggacgg gccttcctgt cgagattctt ccgcccggcc ggccgcacga
     7741 agaaattctc aggcttcacg ggcgggcgcg cgtctcggtg gggttgagca taagcgacgc
     7801 ggcgagcacc tcggcgctcg aagcgatggt gatggggtcg ttccccgtgc agtccgagac
     7861 gagctgcctg tgcgagtggg cgcgcgacgg cgagacggcc ctgctcgttc aacccgaaga
     7921 cccggagggc gtggccgcgg ccgtccggcg cgccctcgcg gacgacgcgc tcgttgaccg
     7981 cgcggccgaa ctgaacgcgc gcaccgtcgc cgaacgttta gaccgcgccg tcgtcgagcc
     8041 gcgcgtcgtc gagatgtacg aaagagtagt cagtagtcag tagccgctgg gctccgcatg
     8101 gcggcgctga cgctgtaacg ctgacgattc gatggcgaag ttttctactg attactgact
     8161 accgactact tctttatgaa gagactgctg aggccactgc tcgcgccggt gcagcgccgg
     8221 ctcgtgcggc acctgctggg caacttcgat tactggcagg cgcggggcgt gcacgtcgtc
     8281 cccgtgcact tctaccagcc gataccggac acgcgcgagc tcgggtcggc gccgtggtcg
     8341 ggccggtcgg agctgccggg cgtctcgatg aacgagggcc ttcagcttga gctgctctcg
     8401 cgcttctcgg cggagtacaa ggccgagtac gacgccttcc cgcgcgagcg ggcgttggag
     8461 ccccaccgct acttcgtcaa caacggcgcc ttcgagagcg ttgacggcga agtgctctac
     8521 tgcatgatcc gccacttccg gcctcggagg attttcgagg tcggctccgg caactcgaca
     8581 tatctttcgg cgcaggccgt cgtgaagaac agggacgaga ccgggcgcga gtgcgagctc
     8641 gtggcgttcg agccctaccc gaacgagacc ttgcgctcgg gctttccggg cctcgcgcgc
     8701 ctcgtcgagg cgaaggcgca ggacatcccc ttgagcaagt tcgccgagct tgacgacggc
     8761 gacatcctct tcatagattc gagccacgtc ttaaagatcg ggagcgacgt tcagtacctc
     8821 tacctagaag tgctgccgcg gctgcggccc ggcgtcgtcg tgcacgtcca cgacatattc
     8881 ctgcccgagg agtacccgcg caagtgggtt atggagcagc agaccttctg gaacgagcag
     8941 taccttctgc aagccttctt ggccttcaac gacgccttcg atgtacactg ggccggaagc
     9001 tacatgcacc tcaagcaccc cgaaaagctg gaggccgcct tcgcgtccta cgaccgcgac
     9061 acccgacggc ccggaagctt ctggatgagg agaagagctt aaagaggttg tcagtagtca
     9121 ggagacagtg gggctccgcc ccgccggcgc tggcactctg accgctccta agagaatgta
     9181 tttctaccgg ctaccggcta ctgaatactt aatcagaggt gagtgaatgc gaattcttgt
     9241 gacgggaggg ctggggatag tcgggtcggg gctcgttcgc gagctacgct cgcgtggcca
     9301 ccacacggtc tcgtgtgacc tgcaccacca gcccgacgag gtgggcttct ctctgaggac
     9361 ggacgtggag acgcccggct acgcgcgcgt ggacgtgggc gagttccggc agatagagcg
     9421 cgtcttcgac cgcctcggcc ccttcgacta cgtcttccac tgcgccgccg agttcggccg
     9481 ctggaacggc gaggacttct acgagacgct ctggcgcacg aacgccgtcg gcaccaaaaa
     9541 catcatccgc cttcaggagc gcctgaagtt ccgtctgatt cacttctcct cgtccgaagt
     9601 ttacggcgat tggccggagc tgatggtcga gtccgtcatg gacgagcacg agatcaagca
     9661 gatgaacgac tacgccatga cgaagtgggt gaacgagatg caggtcagga actcggcgat
     9721 acagtacggt accgagtccg tcgtcgtgcg cctcttcaac acctacggcc ccggcgagta
     9781 ttacagcccc taccgctcgg tgaactgccg cttcctctac tgcgctctga acggcctgcc
     9841 cttcacggtc ttccgcggcc actaccgcac ctcgaccttc ctcgcagaca ccgtgcgcac
     9901 ggccgcgaac atcacggaaa atttccgtgc cggcgagacc tacaacatcg gcggcgtcaa
     9961 ccaccactcc atcgaggagc tggcggaggt cgtcctgaag gtgacgggcg cggacccgaa
    10021 gctcgtcgag caccgcgact ccgaaatcct gacgacgaag attaagaggg ttgacatctc
    10081 gaaggccgtg cgcgacctcg gccacaagaa ctccttcggc ctcgaagagg gcatgaggat
    10141 taccgccgac tggatgcgcg acgtttacaa cc
//
LOCUS       DASPKR010000589         2086 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_92854, whole genome shotgun sequence.
ACCESSION   DASPKR010000589 DASPKR010000000
VERSION     DASPKR010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92854"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1267)
                     /locus_tag="VD968_15825"
     CDS             complement(<1..1267)
                     /locus_tag="VD968_15825"
                     /inference="COORDINATES: protein motif:HMM:NF013765.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15911.1"
                     /translation="MTNAPLTPMLQQYQELKRQHPGTLLFFRLGDFYELFFDDAVTGA
                     RELEITLTARHKERGNPVPMCGVPHHAVAGYVARLIRKGYRVAICEQTEDPSKARKLV
                     RREVVRVITPGTAVDPNLIETKEAVYLAAVCGAGDTYGAAFLDLSTGEFRATEVSGPD
                     AWARVRADIESYSPRELLFPASLAPLVKDAYTGTAAHTAPLPLSAGDERDAAAPVARI
                     SPAGMAAATANGAGLALTPIDDWLWEPTSCASLLLEQFGARTLEGYGLSNKIAAVSAA
                     GACLRYARDTQRAAAAHVTDISFFETHDYLVLDSVTCRNLELVESQGAGGKGACLLNV
                     LDATVTGMGARLLRSWLLRPSLRRGEIEARHTAVEDLHRSQMRRDRVRALLREVSDLE
                     RLTGRINMGTATPRDLVALRRSLGQVPAIR"
     gene            1421..1864
                     /locus_tag="VD968_15830"
     CDS             1421..1864
                     /locus_tag="VD968_15830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15912.1"
                     /translation="MEESRADGGGGALKLTLGTQIITLFLLAIPIACVAWTVTHEEVF
                     REPREFCVRKSRECRRWYQRKFFYLFTCEYCFSHYVTAFFLVVTGYKLLYDDWRGYLV
                     GGFALVWVANQYMSLYNRLRLDIKSEKIETKIKEKVAETQDKGRQ"
     gene            complement(1865..>2086)
                     /locus_tag="VD968_15835"
     CDS             complement(1865..>2086)
                     /locus_tag="VD968_15835"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF012585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HYE15913.1"
                     /translation="LGYVQRGGSPTAFDRVLATRFGVKAFELVLEKRWGLMVALQGNS
                     VVSVPLDEVVDKIKRLDDEIYKVAEIFFG"
BASE COUNT          351 a          665 c          736 g          334 t
ORIGIN      
        1 cgcgtatggc gggaacctgg ccgagcgagc ggcgcagcgc caccaggtcg cgcggcgtgg
       61 ccgtccccat gttgatgcgg cccgtcaggc gctcgaggtc tgagacttcg cgcagcaacg
      121 cgcgcacgcg gtcgcgccgc atctgcgagc ggtgcaggtc ttcgaccgcc gtgtggcgcg
      181 cttctatctc cccccggcgg agtgaaggcc gaagcagcca cgagcgcagc agccgcgccc
      241 ccatccccgt caccgtcgcg tcgaggacgt tcaagaggca cgcgcccttg ccgcccgcgc
      301 cctgcgactc gaccagctct aggttgcggc aagtcacaga gtcgagcacg aggtagtcgt
      361 gcgtctcgaa gaagcttatg tctgtgacgt gcgccgcggc ggcccgctgc gtgtcgcgcg
      421 cgtagcggag gcacgcgccc gcggcgctca cggccgcgat tttgttcgag aggccgtagc
      481 cttcgagcgt gcgcgcgccg aactgttcga gcaggagcga cgcgcacgag gtcggctccc
      541 agagccagtc gtcaatcggc gtgagcgcga gccccgcgcc gttcgcagtc gcggccgcca
      601 tgcccgccgg cgagatgcgc gcgaccggcg cggcggcgtc cctttcgtcg cccgcggaga
      661 gtggaagcgg cgcggtgtgc gctgccgtcc ccgtgtacgc gtctttgacg agcggggcga
      721 gcgaggccgg gaagagaagc tcgcgcggcg agtaggactc gatgtcggcg cgcacgcgcg
      781 cccacgcgtc ggggccggag acttccgtgg cgcggaactc gccggtcgag aggtctagga
      841 aggccgcgcc gtaagtgtcg ccggcgccgc acacggccgc gagatagacg gcctccttcg
      901 tctcgatgag gttcgggtca acggccgtcc ccggcgttat gacgcgcacc acctcgcggc
      961 gcacgagctt gcgcgccttc gaggggtctt cggtctgctc gcagatggcg acgcggtatc
     1021 ccttgcgaat gaggcgcgcg acgtagccgg cgaccgcgtg gtgcgggacg ccgcacatgg
     1081 ggactgggtt gccgcgctcc ttgtggcggg ccgtgagagt tatctccagc tcgcgcgcgc
     1141 ccgtcacggc gtcgtcgaag aagagctcgt agaagtcgcc gaggcggaag aagaggagcg
     1201 tgccggggtg ttgacgctta agctcctggt actgctggag catcggcgtg agcggtgcgt
     1261 tcgtcatcgt atcgaatttg gggccgtggg aggcgatttc acggcggaga agtttcgccg
     1321 gacaaactaa cacagacggc ggggaaaggc acgggcgccg ccccgccgcg gcggcggctc
     1381 aagagaatcc gaaaatgttc gggataaaac cgtgaaggcg ttggaagaga gtcgggcgga
     1441 cggaggcggg ggtgcgctca agttgacgct cggcacgcag ataatcacgc tcttcctgct
     1501 cgccatacct atagcgtgcg tcgcctggac ggtgacgcat gaggaggtct tccgcgagcc
     1561 gcgcgagttc tgcgtaagga agagccggga gtgccgccgc tggtatcagc ggaaattctt
     1621 ctacctgttc acgtgcgagt actgcttcag ccactacgtc actgcattct tcctcgtcgt
     1681 caccggctac aagctcctct acgacgactg gcgcggctac ctcgtcggcg gcttcgcgct
     1741 cgtctgggtc gccaaccagt acatgagcct ctacaaccgc ctgcggctcg acatcaagtc
     1801 ggagaagatt gagacgaaga taaaagagaa ggtggcagaa actcaggaca aagggcggca
     1861 gtgatcagcc gaagaagatc tccgcgacct tgtagatttc gtcgtcgagc cgcttgatct
     1921 tgtccacgac ctcgtcgagc gggacggaga cgacgctgtt gccttgcagg gcgaccatca
     1981 ggccccagcg cttctccagc acaagctcga acgccttgac gccgaagcgc gtggcgagca
     2041 cgcggtcgaa cgccgtgggc gagccgcccc tctgcacgta gccgag
//
LOCUS       DASPKR010000590         9921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_347425, whole genome shotgun sequence.
ACCESSION   DASPKR010000590 DASPKR010000000
VERSION     DASPKR010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9921)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9921
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347425"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(107..1306)
                     /locus_tag="VD968_15840"
     CDS             complement(107..1306)
                     /locus_tag="VD968_15840"
                     /inference="COORDINATES: protein motif:HMM:NF017442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF790 family protein"
                     /protein_id="HYE15914.1"
                     /translation="MLTADLAMSWQRGGKVQPRYVDAADADRLREAEELIAIFRDHEG
                     RARAALEESLRDYVGTGTDYKVLRGLIKLLTDRCEFETSAPADPAEIRRALFLKARGL
                     HPVVTGEARDLLITEAARELLCEPEELDESLYADLPENQKLAVFEPVGAAELLDLYNV
                     AQAQALLYRCVEMRLWIEPQGAGGYRELFGAIKAYRLIHTVKGNAGEGYEVRLDGPAS
                     VFQRSQKYGVQMAVFLPALLLCEGWRMSAEIQSRRGAPARFELTSRQTRLRSHYASIT
                     PYENPVLEKLPAAWARAGVEWELEPSGEIIPLGDSAFIPDYRLRHPSGALVHLEVLGF
                     WTPRHLTERLAEFEHAGVGNFILAAWDELRGSRDPLTSVPANVIVFKKSLDPAVVCLL
                     ADRLADA"
     gene            complement(1311..2717)
                     /locus_tag="VD968_15845"
     CDS             complement(1311..2717)
                     /locus_tag="VD968_15845"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HYE15915.1"
                     /translation="MSATPLVLRFDSGTLLLDGAGEGARVPVPFKWDERVLRWRAWGW
                     AYRDVVRELKRAGTVYEDRARGYFEFDFPTKLLAEPRPYQREAIEEWRQAGSRGVVVL
                     PTGAGKSLVAQMAIERVKRSTLVVVPTIDLMNQWYDLLLSCFDAEVGLIGGGYFEVGA
                     LTVTTYASAFRFMERLGDRFGLVIFDECHHLPSGVHRCAAEFSIAPFRLGLTATPERA
                     DGGEALLEQLIGPFVFRRETHELAGEYLSGYSVVRLRVELSAEERAAYERERDIFRGF
                     LKSRGLGLSTLRGWQAFVAESARSPEGRRAMMAYRESRRIALGTGAKLRVLAELLQRH
                     RREKVLIFTAENEMVYRISQEFLVPAVTHETGVKERRAWLEAFNRGEVMALVTSKVLN
                     EGVNIPDASVAVVLSGSGSTREHVQRLGRILRKLPGKEATLYEVVTQGTTEENISRRR
                     GSGEQFREAGPQGPGLNF"
     gene            complement(2740..3645)
                     /locus_tag="VD968_15850"
     CDS             complement(2740..3645)
                     /locus_tag="VD968_15850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15916.1"
                     /translation="MGEEFGGGVEGGAALAVVERSQFMPAMSIELAVERYGAVTEFVS
                     RVLRRDIDYGVIPGTEKRTLLKPGAEKLTTFFGLSTRFQLLERIEDWTGAAYGGEPFF
                     YYLYRCQLYRGDLLIAESDGSCNSRETKYRWREAQRTCPACSQAAIVKGREEYGGGWV
                     CFKKRGGCGAKFPDGDQLIESQQTGRVFNPDIADQVNTIQKMAQKRSLIAATLLAVNA
                     SEFFTQDVEDFAHGAAPAAAHGAASDLDSEIRAACRALGKTEEQLVGWVRKKFGAAGV
                     EELTAADKAEVLSLLKGMLMRKAAA"
     gene            complement(3685..4137)
                     /locus_tag="VD968_15855"
     CDS             complement(3685..4137)
                     /locus_tag="VD968_15855"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HYE15917.1"
                     /translation="MSFNKIVVVGNLGRDPELRYTPQGTAVCSFTMATNERRKDKAGE
                     QQDVTTWFKVTVWGKQAETVSKYLSKGRSAYVEGRLHVEEWTDRDGKTRHTLEVNASD
                     VQFLDGGSGVEGIPVRQTSQPATPAAARAASGGRGGSAPQIEDDEIPF"
     gene            complement(4266..5195)
                     /gene="rnz"
                     /locus_tag="VD968_15860"
     CDS             complement(4266..5195)
                     /gene="rnz"
                     /locus_tag="VD968_15860"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: protein motif:HMM:NF000801.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0042780 - tRNA 3'-end processing [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HYE15918.1"
                     /translation="MTFLGTSAGVPTRKRNVSSVALQLPQRGELWLFDCGEGTQHQLL
                     RSDLNLSQLTRVFITHMHGDHVYGLMGLLATCGMAGAGRPLTLYGPRGLEQLVRETSR
                     LTQLHTSYPLEIRTVEGGAVFEDDEYTVTSAPLKHRLPAFGYRVTEKDRPGHFDVERA
                     RAEGIPAGPLYGRLKRGERVTLPDGRAFDGADFCGPAIRGRSVVYCTDTIYCRSAVEL
                     ARGADLLIHEATFAEADEHLAVRSTHSTTKMAARVAREAGVRLLLITHFSPRYFPGND
                     ISPDDLLREARDAFPATEIAHDFLSVEVPKRED"
     gene            complement(5218..5856)
                     /locus_tag="VD968_15865"
     CDS             complement(5218..5856)
                     /locus_tag="VD968_15865"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF002003.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003905 - alkylbase DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HYE15919.1"
                     /translation="MTRSLGQGAPRGGKLAREFYTRRDARAVARDLLGKRLVVPSPAG
                     GRVSGRIVETEAYLGIGDKAAHSYGGRRTARTETMYALGGTAYVFFIYGMHDQFNVVT
                     GPVGLPHAVLVRALEPEEGIEIMRERRPGRADRELTSGPGKLCRALAIDRSHDGEDLL
                     EGARVWIEDAGARVRAGDIASGPRIGVAYAEEFALKPWRYWLRGNAYVSRKA"
     gene            complement(5853..6524)
                     /locus_tag="VD968_15870"
     CDS             complement(5853..6524)
                     /locus_tag="VD968_15870"
                     /inference="COORDINATES: protein motif:HMM:NF016240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceH family protein"
                     /protein_id="HYE15920.1"
                     /translation="MGANLNDVEVRVAGSLVEKQVTTPEYYPLTLNALVSACNQISNR
                     DPVVRYDERTVADALETLRSKNLVYVFYGADSRVPKYKHMLREIFGLSPQELAAMCVL
                     MLRGPQTVGEVRGRTGRLYNFADLSEVEATLEALAKREEPLVVKLPRQPGRKEARYAH
                     TLSGAPPAEEESADEGAAREPRAPARAAAGDERVARLEAEVEALRGELAELQRRFDEF
                     RKQFE"
     gene            6720..9407
                     /locus_tag="VD968_15875"
     CDS             6720..9407
                     /locus_tag="VD968_15875"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing protein"
                     /protein_id="HYE15921.1"
                     /translation="MSTPVNTNVSEAKAILRGKSARPAEILALEKKLRAEKQFGYARR
                     LLSRALEDPSVKSDDRLELEVRQKLALCTYKDPDLPADMKLDRALEILREAEDLAETR
                     NQETLGLAGAIYKRMWEVDNQKAHLERALFYYLRGYGEGAERDQGYTGINAAFILDLL
                     ANQEEKEARRADMPRGSDEYARIEARRARARAIREEIVRVVAPLSGTDWLTGKWWFYS
                     TVAEAYFGLGPYDETNYGKAVEWLKEGRANAAPPEWEYESTARQLAELARLQAGGADI
                     EQTPAWRALGEFLGHGTAAVRSAFAGKIGLGLSGGGFRASLYHIGVLAKLAELDVLRR
                     VEVLSCVSGGSVIGAHYYLEVRKLLQEKADSEITREDYIEIVKRVQKEFLRGVQRNVR
                     TRVLSEPITNLRMIFTRNYSRTLRAGELFESEIFSLVPDGGGRGERFINDLYVKPKGE
                     PPDFRPKYNNWRREAKVPILILNAATLNTGHSWHFTASYMGEPPAGIDSVIDGNDRLR
                     RVYYTEAPERHRCVRLGHAVAASACVPGLFEPVALEGLYPDRVVRLVDGGVCDNQGIT
                     GLLEQDCNVLLISDGSGQMESLADPSRGPLGTALRSTTILQSRVRQSQYQDMVARKRS
                     GLLRGFMFVHLKEDLNVDPVDWVGCLEPYDASDDARPVSRRGKLTSYGVARDIQQSLA
                     SVRTDLDSFSDVEAYALMASAYRMTEHAFAVGKCVEGVEEPAERQAWEFLAVEAGMIG
                     EGGQYEFLKWLLGVSNSLAFKIWKLSKGLRALSWVLAVAFVLLAAYAVWRWPDAVLVK
                     AVTLWGLGVFVVTMGLTMLATAFVGKTLMRIVRLRETLIRMAVGAGFGIFGWLAAWLH
                     LHVFDKMFLKLGSLDNFRRRGDTTAGGLGDHPAEPLRQT"
     gene            complement(9511..>9921)
                     /locus_tag="VD968_15880"
     CDS             complement(9511..>9921)
                     /locus_tag="VD968_15880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15922.1"
                     /translation="PDYLRGDRDYVYQTLKWAAEEDGTLYVSHAHMTYARSSKGMNAY
                     LTAVDTREGRVLWRSAPLVSNSANFELAGDLIITGYGFTKEPDFLYLLDKRTGAVRQQ
                     LPVASVPTYIIRKGERVHVRAYDKDLVLRLAGSR"
BASE COUNT         1546 a         3417 c         3354 g         1604 t
ORIGIN      
        1 tctcgctcca caccacgacc aacatcgagg tcatcaagcg gttcctgccc gtcgagatac
       61 gcaccacgca gttgacggaa gaggtctgga aggtcgaagt cgagggctag gcgtcggcga
      121 gccggtcagc caggaggcag accacggctg ggtctaaact cttcttgaag acgatgacgt
      181 tcgcggggac gctcgtcagg ggatcgcggc taccgcgcag ctcgtcccag gcggcgagta
      241 tgaagttgcc gacgcccgcg tgctcgaact ctgcgagccg ctccgtgagg tgccgcggag
      301 tccagaaacc caggacttcg aggtggacga gcgcgcccga cgggtggcgc agacggtagt
      361 cgggtatgaa cgcgctgtcg cccaagggga ttatctcgcc gctcggctcg agctcccact
      421 cgacgcccgc gcgcgcccac gcggcgggca gcttctcgag gactgggttc tcgtagggcg
      481 ttatgctcgc gtagtgcgag cgcaggcgcg tctgcctgct agtcaattcg aagcgcgcgg
      541 gcgcgcctcg cctcgactga atctcggcgc tcatgcgcca gccctcgcag agcagcagcg
      601 ccggcaggaa gacggccatc tgcacgccgt acttctgcga ccgctggaag acggaggccg
      661 ggccgtcgag ccgcacctcg taaccctcgc ccgcattccc cttcaccgtg tgaatcagtc
      721 ggtaagcctt tatcgcgccg aacagctcgc ggtagccccc ggccccttgg ggctcgatcc
      781 agaggcgcat ctcgacgcaa cggtacagga gcgcctgcgc ctgcgcgacg ttgtagaggt
      841 ctaaaagctc cgcggcgccc acgggctcga agacggcgag cttctggttc tcggggaggt
      901 cggcgtagag gctctcgtcc agctcctcgg gctcgcagag cagctcccgc gccgcctcgg
      961 ttatgagcag gtcgcgcgcc tcgccggtga cgacggggtg cagcccgcgg gccttcagga
     1021 acagcgcgcg gcgaatctcc gcggggtcgg ccggcgcgct cgtctcgaac tcgcagcggt
     1081 cggtcagcag ctttatgagc ccgcgcagaa ccttgtagtc agtcccggtc ccgacgtagt
     1141 cgcgcaggga ctcttcgagc gccgcgcgcg cgcgcccctc gtggtcgcgg aagatggcga
     1201 tgagctcctc ggcctcccgg agccggtcgg cgtcggccgc gtcgacgtag cgcggctgca
     1261 ccttccctcc gcgctgccag ctcatcgcga ggtctgccgt cagcatgtct tcagaaattc
     1321 aggcccggcc cctgcggtcc cgcctcgcgg aactgctcgc ccgagccgcg gcggcggctg
     1381 atgttctcct cggtcgtccc ctgcgtgact acctcgtaga gcgtcgcctc cttgcccggc
     1441 agcttccgga gaatcctgcc gagtcgctgc acgtgctctc gcgtcgagcc agagccggag
     1501 agcacgacgg cgaccgaggc gtcggggatg ttgacgccct cgttcagaac cttcgaggtg
     1561 acgagcgcca tcacctctcc gcggttgaag gcttcgagcc aggcgcgccg ctcctttacg
     1621 cccgtctcgt gcgtgaccgc tggcaccagg aactcctgcg agatgcgata gaccatctcg
     1681 ttctcggccg tgaatatcaa gaccttctcg cgcctgtggc gctgtaaaag ctcggcgagc
     1741 acgcgcagct tcgcgcccgt ccccagggcg atgcgccgcg actcgcggta ggccatcatg
     1801 gcgcggcgcc cctcgggcga gcgcgcgctc tccgccacga acgcctgcca gccgcgaagg
     1861 gtgctcagtc ctagcccccg gcttttcagg aagccgcgga atatgtcgcg ctcgcgctcg
     1921 taggcggcgc gctcctcggc cgatagctct acgcgcaggc gcacgaccga gtagcctgaa
     1981 aggtactcgc ctgccagctc gtgcgtctcg cggcggaaga cgaaggggcc gatgagctgt
     2041 tcgagcaggg cctcgccgcc gtcggcgcgc tcgggcgtgg ccgtcaggcc cagccggaag
     2101 ggcgcgatgg agaactcagc ggcgcagcgg tggacgcccg aaggcaggtg gtgacactcg
     2161 tcgaagatga cgaggccgaa gcggtcgccc aggcgctcca tgaaacggaa ggccgaggcg
     2221 taggtcgtaa cggtgagcgc gcccacttcg aagtagccgc cgccgatgag gcccacctcc
     2281 gcgtcgaagc aggagagcag taggtcgtac cactggttca tcaggtcaat cgtggggacg
     2341 acgaccagcg tcgagcgctt cacacgctcg atagccatct gcgcgacgag gctcttgccc
     2401 gcccccgtcg gcagcacgac tacgccgcgc gagccggctt gccgccactc ctcaatggcc
     2461 tcgcgctggt acggcctcgg ctcggcgagc agtttcgtag ggaagtcgaa ctcgaagtag
     2521 ccgcgggcgc ggtcttcgta aacggtgcct gcgcgcttga gctcgcgcac aacgtcgcgg
     2581 taggcccagc cccacgcgcg ccagcgcagc acgcgctcgt cccacttgaa ggggacaggc
     2641 acccgcgcgc cctcgcccgc cccgtcgagg agcagcgtgc cggagtcgaa cctgagcacg
     2701 agcggggtgg cgctcattgc gtaagaagaa ttaggagagt caggccgcgg ccttgcgcat
     2761 cagcatgccc ttcaggagcg aaagcacctc ggccttgtct gcggccgtga gctcctcgac
     2821 gcccgcggcg ccgaattttt tcctcaccca gccgaccaat tgctcttcgg tcttgcccag
     2881 cgcgcggcac gcggcgcgta tctccgagtc gaggtctgac gcggcgccgt gtgccgcggc
     2941 cggcgcggcg ccgtgcgcga agtcctccac gtcctgcgtg aagaactccg aggcgttgac
     3001 ggccaagagc gtcgccgcaa tcaacgagcg cttctgagcc atcttctgga tggtgttcac
     3061 ctggtcggcg atgtcggggt tgaagacgcg gccggtctgc tggctctcga ttaactggtc
     3121 gccgtccggg aacttggcgc cgcagccgcc gcgcttctta aaacagaccc agccgccgcc
     3181 gtactcctcg cgccccttga cgattgcggc ctgggagcag gcggggcagg tgcgctgcgc
     3241 ctcgcgccag cggtacttgg tctcgcggga gttgcaggag ccgtccgact cggcgattag
     3301 gaggtcgccg cggtagagct ggcagcggta gaggtagtag aaaaagggct cgccgccgta
     3361 ggcggcgccc gtccagtcct ctatgcgctc gaggagctgg aagcgtgtgg agaggccgaa
     3421 gaaggtcgtg agcttttcgg ccccgggctt aagcagcgtg cgcttctccg tgccggggat
     3481 gacgccgtag tcaatgtcgc gcctgagcac gcggctcacg aactcggtga cggcgccgta
     3541 gcgctccacc gccagctcga ttgacatggc cggcatgaac tgcgagcgct ctacgactgc
     3601 gagcgccgcg ccgccctcga cccctccgcc gaactcctcg cccatctctc aatccgcctt
     3661 gtcagaaacc gcccgccgcc cgcgtcagaa cgggatctcg tcgtcctcaa tctgcggggc
     3721 cgagccgccg cggccgcccg aggccgcgcg cgccgccgcg ggggtcgcgg gctgcgaggt
     3781 ctggcggacg gggatgccct cgacgcccga gccgccgtcg aggaactgca cgtcggaggc
     3841 gttgacttct agcgtgtggc gcgtcttccc gtcgcggtca gtccactcct ctacgtgcag
     3901 gcgcccctcg acgtaggcgc tgcgcccctt cgataggtac ttcgagacgg tctcggcctg
     3961 cttgccccag accgtcacct tgaaccaggt ggtcacgtcc tgctgctcgc ccgccttatc
     4021 tttgcgccgc tcgttcgtag ccatcgtgaa agagcagacg gccgtcccct gcggcgtgta
     4081 gcgaagctcc gggtcacgcc ccaaatttcc gaccacgact atcttgttga aggacatctc
     4141 aggtcacgct cctcgcttta cggttttgac tgcccggccc gcgccggggt tgcaagcgtg
     4201 gcacatcgta tcacacataa cagccgtttt gcacaagcct tatcagaaaa ggcggcccgc
     4261 cgcgctcagt cttcgcgctt cgggacttca acgctcagga agtcgtgcgc tatctcggtc
     4321 gcggggaagg cgtcgcgtgc ctcgcgcagg aggtcgtcgg ggcttatgtc gttgccgggg
     4381 aagtagcgcg ggctgaagtg cgtgataagg agcaggcgca cgcccgcctc cctagcgact
     4441 cgggcggcca tcttcgtcgt cgagtgggtg ctgcggacgg cgaggtgctc gtccgcctcg
     4501 gcgaaggtgg cctcgtgtat caggaggtct gccccgcgtg cgagctcgac ggccgagcgg
     4561 cagtagatcg tgtcggtgca gtaaacgacg ctgcggccgc gtatggcggg gccgcagaag
     4621 tctgcgccgt cgaacgcgcg gccgtcgggg agcgtgacgc gctcgcccct cttcagccgc
     4681 ccgtagagcg gccccgcggg gatgccttcg gcgcgcgccc gctccacgtc gaagtggccg
     4741 ggccgatctt tctccgtcac gcggtagccg aaggcgggca ggcggtgctt gaggggcgcg
     4801 ctcgtcacgg tgtactcgtc gtcctcgaat accgcgccgc cctcgaccgt gcggatttct
     4861 agcgggtagg aggtgtgcag ttgcgtaagc cggctagtct cgcgcacgag ctgttcgagc
     4921 ccgcgcgggc cgtagagcgt gagcgggcgc cccgccccgg ccatgccgca ggtggcgagc
     4981 aggcccatca acccatagac gtggtcgccg tgcatgtgcg ttatgaagac gcgcgtgagc
     5041 tggctgaggt tgaggtcgct tcgcaggagc tggtgctgag taccctcgcc gcagtcgaag
     5101 agccagagct cgccgcgctg cggcagttgc agcgccacgc tcgaaacgtt cctcttgcgc
     5161 gtcggcacgc ccgcgctcgt ccccaggaat gtcacacgca aagctcttgc gcccctctca
     5221 tgcttttctg ctgacgtagg cgttgccccg cagccagtag cgccagggct tcagggcgaa
     5281 ctcctcggcg taggcgacgc ctatgcgcgg ccccgaggcg atgtcacccg ccctcacgcg
     5341 cgcgcccgcg tcttcaatcc agactcgcgc gccttcgagc aggtcttcgc cgtcgtgcga
     5401 gcggtctatc gcgagggcgc ggcagagctt gccggggccg ctcgtaagct cgcggtcggc
     5461 gcggcccggc cgccgctcgc gcataatctc tatgccctcc tccggctcaa gcgcgcgcac
     5521 caggaccgcg tggggaagcc ccacggggcc ggtcacgacg ttgaactggt cgtgcatgcc
     5581 gtagatgaag aagacgtatg cggtgccgcc gagcgcgtac atcgtctccg tgcgcgcggt
     5641 gcgccgcccg ccgtaggagt gcgcagcctt gtccccgatg ccgagatagg cttccgtctc
     5701 tacgatgcgg cccgagacgc gcccgcccgc gggcgacggc acgacgaggc gcttgccgag
     5761 caggtcgcgc gccacggctc gcgcgtcccg gcgcgtgtag aactcgcgcg cgagcttccc
     5821 gccgcgcggc gccccctgcc cgagagagcg cgtcactcga actgcttcct gaactcgtcg
     5881 aagcgccgct gaagctcggc aagctcgccg cgcagggcct cgacctcggc ctcaaggcgg
     5941 gccacgcgct cgtcgccggc cgcggcgcgc gccggggcgc gcggctcgcg cgccgcgccc
     6001 tcgtcggccg actcctcctc ggcgggaggg gcgccggaga gcgtgtgcgc gtagcgcgcc
     6061 tccttcctgc cgggctgccg cgggagcttg acgacgagcg gctcctccct cttcgcaagg
     6121 gcttcgagcg tggcctctac ctccgagagg tcagcgaagt tgtagaggcg cccggtccgg
     6181 ccgcgcacct cgcccacggt ctgcggcccg cgcagcatca gcacgcacat ggcggccagc
     6241 tcctgcggcg agaggccgaa aatctcgcgg agcatgtgct tgtacttcgg cacgcggctg
     6301 tcggcgccgt agaagacgta aaccagattc ttcgagcgca gcgtttcgag cgcgtcggcg
     6361 accgtgcgct cgtcgtagcg gacgacgggg tcgcggttgg aaatctggtt gcacgcgctg
     6421 accagcgcgt tcaaggtcag cgggtaatac tcgggcgtcg tcacctgctt ctctacgagc
     6481 gagccggcga cgcgcacctc cacgtcgttc aagttcgcgc ccactttctc cgccccccgt
     6541 cccgtgctca tgattcccag aatttcattg acatggtctg accgtcaagt gtataagcca
     6601 cggcgtctct tcttcggctc gtaacttcgc gcgcactcac ggcggcggca ggggccgcca
     6661 gccgccccgc tcgaccactc acacgcgact tcaaccctac aggcgacgga ggcagtcaca
     6721 tgagcacgcc ggtcaacacg aacgtctcgg aggcgaaggc catcctgcgc ggcaagtccg
     6781 cgaggccggc cgaaatcctc gcgctcgaga agaagctcag ggccgagaag cagttcggct
     6841 acgcgcgccg cctgctctcg cgcgccctcg aagacccctc cgtcaaatcc gacgaccggc
     6901 tggagctgga ggttcggcag aagctcgcgc tctgcaccta caaagaccca gacctcccgg
     6961 ccgacatgaa gctcgaccgc gcactcgaga tactgcgcga ggccgaagac ctcgccgaga
     7021 cgcgcaacca ggagacgctc ggcctggccg gcgccatcta caagcgcatg tgggaggttg
     7081 acaaccagaa ggcccacctc gagcgcgccc tcttctacta cctgcgcggc tacggcgaag
     7141 gcgccgagcg cgaccagggc tacacaggca taaacgccgc cttcatcctc gacctgctcg
     7201 ccaaccagga ggagaaggag gcccgcaggg ccgacatgcc gcgcgggtct gatgagtacg
     7261 cgcgcataga ggcgaggcgc gcgcgcgcac gcgcgatacg cgaggagata gtgcgcgtgg
     7321 tcgccccctt gagcgggacc gactggctga ccggcaagtg gtggttctac agcaccgtcg
     7381 ccgaagccta cttcggcctc gggccttacg acgagacgaa ctacggcaag gccgtcgagt
     7441 ggctgaagga gggcagggcg aacgcggcgc cgcccgagtg ggagtacgag tcaacggcgc
     7501 ggcagttggc cgagctggcg cgccttcagg ccggcggcgc cgacatcgag cagacccccg
     7561 cgtggcgcgc gctcggcgag ttcctcggcc acggcacggc cgccgtgcgg agcgccttcg
     7621 ccgggaagat cggcctgggc ctttcggggg gcggcttccg cgcctcgctc taccacatag
     7681 gcgtcttggc gaagctcgcc gagctcgacg tgctgcggcg cgtcgaggtt ctctcctgcg
     7741 tctcgggcgg ctcggtcata ggcgcgcact actacctcga agtgcggaag ctactccagg
     7801 agaaggccga ctcggagata acgcgcgagg actacatcga gatcgtcaag cgcgtgcaga
     7861 aggagttcct gcgcggcgtg cagcgcaacg tccgcacccg agtcctctcg gagccgatca
     7921 cgaaccttcg gatgatcttc acgcgcaact actcgcggac gctccgcgcc ggcgagctgt
     7981 tcgagtcgga gattttcagc ctcgtccccg acggcggcgg gcgcggggag cgcttcatca
     8041 acgacctcta cgtgaagccg aagggcgagc cgcccgactt ccgccccaag tacaacaact
     8101 ggcggcgcga ggcgaaagtc ccgatactga ttctcaacgc ggccacgctc aacaccggcc
     8161 acagctggca cttcacggcc tcctacatgg gcgagccgcc cgccggcata gacagcgtga
     8221 ttgacggcaa cgaccgcctg cgccgcgtct attacacgga agcgcccgag cgccaccgct
     8281 gcgttcggct cggccacgcc gtcgccgcct cggcctgcgt ccccggcctc ttcgagccgg
     8341 tcgcgctcga agggctctac cccgaccgcg tcgtccgact cgttgacggc ggcgtctgcg
     8401 acaaccaggg catcacgggg ctgctggagc aggactgcaa cgtgcttctc atcagcgacg
     8461 ggagcggcca gatggagtct ctggcagacc cgagccgcgg cccgttgggg acggcgctgc
     8521 gctcgaccac cattctgcaa tcgcgcgtgc gccagtcgca gtaccaggac atggtcgcgc
     8581 gcaagcgctc gggcctgctg cgcggcttca tgttcgtgca cctgaaggaa gacctgaacg
     8641 ttgacccggt ggactgggtc ggctgcctgg agccgtatga cgcgtcggac gacgcgaggc
     8701 ctgtctcgcg ccgcggcaag ctcacgagct acggcgtcgc gcgcgacata cagcagtcgc
     8761 tcgcctcagt ccgcacagac ctcgactcct tctccgacgt tgaagcctac gccctgatgg
     8821 cgagcgccta ccgcatgacg gagcacgcct tcgccgtggg caagtgcgtc gagggcgtcg
     8881 aggagccggc cgagcgccag gcgtgggagt tcctcgccgt cgaggcgggc atgataggcg
     8941 agggcgggca gtacgagttt ctgaagtggc tgctgggcgt gagcaactcg ctggccttca
     9001 agatatggaa gctctcgaag gggctcaggg ctctgtcgtg ggtgctcgcg gtcgccttcg
     9061 tcctgctcgc ggcttacgcc gtctggcgct ggcccgacgc cgtgctcgta aaggccgtga
     9121 ctctctgggg cctcggcgtc ttcgtcgtaa cgatggggct cacgatgctc gccacggcat
     9181 tcgtcgggaa gacgctcatg cggatcgtgc gcctgcggga gacgctgata cgcatggccg
     9241 taggggctgg gttcggcatc ttcggctggc tcgccgcgtg gctgcacctg cacgtcttcg
     9301 acaagatgtt cctgaagctc gggagcctcg acaacttcag gcggcgcggc gacacgactg
     9361 ccggcggcct cggcgaccac cccgccgagc cgctgcgcca gacgtaaggc cgaaaggcag
     9421 agcgcaacac gggaggcgcg ccgtcatcac tccgtcaacg gcgaagtgat gacggcgcgc
     9481 ctcccgtctt tcctgctcct tcctttgccc tcagcgggag ccggcgagcc gcagcacgag
     9541 gtctttgtcg taggcgcgga cgtggacgcg ctcgcccttc cggatgatgt aggtcgggac
     9601 ggaggccacg gggagctgct ggcgcacggc gccggtgcgt ttatcgagca ggtacaggaa
     9661 gtccggctcc ttcgtgaagc cgtagccggt gatgataagg tcgcccgcca gctcgaagtt
     9721 cgcggagttg gagacgagcg gcgcgctgcg ccagagcacg cgcccctccc gcgtgtcaac
     9781 agcggtcagg taagcgttca tccccttcga cgagcgcgcg taggtcatgt gcgcgtgcga
     9841 gacgtagagc gtgccgtcct cctcggccgc ccacttgagc gtttgataga cgtaatcgcg
     9901 gtctccgcgc aggtagtcgg g
//
LOCUS       DASPKR010000591         3252 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_222311, whole genome shotgun sequence.
ACCESSION   DASPKR010000591 DASPKR010000000
VERSION     DASPKR010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3252)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3252
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222311"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(169..1218)
                     /locus_tag="VD968_15885"
     CDS             complement(169..1218)
                     /locus_tag="VD968_15885"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase family
                     protein"
                     /protein_id="HYE15923.1"
                     /translation="MAVGETGQDGAKGRDPAEAFRAGRSSLTGDEEATRAAIPAAVES
                     ALGARALGAVALVTGPLPFGKVNRVFKVEVEGGGAVVVKVFAYEDWPEGGKPEWLEEQ
                     LARAAVPHARLLHCSRGKEHFPAGFAVYEHVEGRNCVEAMRAGVLSGREYCRLVGAYL
                     RAVHSVGPARYGYVNGGAGTDDDYVECKLVYDVSDRLLEVDERLHTRLFPVIEEEVTR
                     LLRPLEGRFTPRLLHGDPFPRNALLTAPGELLFVDWDEAMSGIWPEDLARLSYWFTHE
                     NPSRVCERLTGAEVAEAFLRGYGESEFGADELARIERALHVVYSADLISYQLKTNNTE
                     SCRRTMRVLEELLKL"
     gene            complement(1219..2157)
                     /locus_tag="VD968_15890"
     CDS             complement(1219..2157)
                     /locus_tag="VD968_15890"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HYE15924.1"
                     /translation="MADKGKGEIPLRPLGRTGARVTALALGGYHLGLVKSEREAARIV
                     HEAVDEGLTFMDNAWEYHDGRSEELMGRALEGRRGRVFLMTKVCSHGRDRRAAMRQLE
                     QSLRRLKTDYLDLWQIHEVVYENDPDLHFAPGGAVEALEQAKREGKVRFVGFTGHKHP
                     DIHLKMLAHGFPFDACQLPLNVFDATFRSFERRVLPELNRRGIAPLGMKSMGGEGTPV
                     KKRVVTATEALRYAMSLPVASTVSGIDSLKVLRQNLRIARGFEPMTEREMQNLRERCA
                     PEASDGRFELYKTSMAFEGPPGRKQHKFPPLEELSA"
     gene            complement(2261..2992)
                     /locus_tag="VD968_15895"
     CDS             complement(2261..2992)
                     /locus_tag="VD968_15895"
                     /inference="COORDINATES: protein motif:HMM:NF017353.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HYE15925.1"
                     /translation="MSDHKKDSIGEEASAFGERVKGAAKDAYGDLTDNERLEREGERE
                     NAIGNARQEANDVIGGTATAGAAATRARAGAGRTVHGLFRDRESAEGAYRSLAERGYT
                     KDDVNVLMSDETRNKHFADGDSEVGSKALEGMGVGSAVGGTLGAIIAAVAAIGTNVII
                     PGAGLVVAGPLAAALAGAGAGGLTGGLVGTLVGAGIPEEHAKTYDEGIRGGGIYMGVN
                     ARADEDADYFEREWREKHRGENVYR"
BASE COUNT          473 a         1145 c         1062 g          572 t
ORIGIN      
        1 agctcgcccg gccgaacctg cgcgagcacg ggcaggcggc ctacgtgcgc aaggtaatcc
       61 gcgacccagt caaccatctc gcgcccgaag cgccggaact cttccgggct catgtcgccg
      121 agcggcggcg catggcccgc ccggtctgcg tcttcgtctt tcatagagtc aaagcttcag
      181 aagttcttcg agcacgcgca tcgtccgccg gcagctttcg gtattgttcg tcttgagctg
      241 gtaagaaatc aaatcggccg aatagacgac gtgcagcgcg cgctcgattc gcgccagctc
      301 gtcggcgccg aactccgact cgccgtagcc ccgcaggaaa gcttcggcga cctcggcgcc
      361 cgtgagtcgc tcgcagacgc gcgaggggtt ctcgtgcgtg aaccagtagg agagccgcgc
      421 gaggtcttcc ggccagatgc cggacatcgc ctcgtcccag tcaacgaaca gaagctcgcc
      481 gggcgcggtg agaagcgcgt tccgcgggaa cgggtcgccg tgcagaagcc gcggcgtgaa
      541 cctgccttcg agcgggcgca ggagccgggt gacctcctcc tctatgacgg ggaagaggcg
      601 cgtgtggaga cgctcgtcca cttcaagcag gcggtcgctc acgtcgtaaa ccagcttgca
      661 ctctacgtag tcgtcgtccg tgcctgcgcc gccgttaacg tagccgtagc gcgcgggccc
      721 gacggagtga accgcgcgca ggtaggcgcc tacgagccgg cagtattccc tgccgctgag
      781 taccccggcg cgcatcgcct cgacgcagtt gcggccctcg acgtgctcat agacggcgaa
      841 gcctgcgggg aagtgctctt tgccgcgcga acagtggagc agccgcgcat gcgggacagc
      901 ggcgcgcgcg agctgctctt ccagccactc gggcttgcca ccctcgggcc agtcctcgta
      961 cgcgaagacc tttacgacga cagcgccgcc cccttcgacc tcgactttaa agacgcggtt
     1021 gactttgccg aacggcagcg gccccgtgac tagcgcgacg gcgcccagcg cccttgcgcc
     1081 tagagccgac tcgactgccg ctgggattgc ggcgcgcgtc gcctcctcat cccccgtgag
     1141 cgacgacctg cccgcgcgga acgcctccgc ggggtcgcgc cccttcgcgc cgtcttgccc
     1201 ggtctcgccc acggccattt acgcggacag ctcttcgagc ggcgggaact tgtgctgctt
     1261 gcggccgggc ggcccctcga aggccatgga ggtcttgtat agctcgaagc ggccgtcgga
     1321 cgcctcgggc gcgcagcgct cgcgcaagtt ctgcatctcg cgctccgtca tcggctcgaa
     1381 gccgcgagcg atgcgcaggt tctggcggag caccttgagc gagtctatgc cgctcacggt
     1441 cgaggcgacg ggcaggctca tggcgtagcg cagggcctcg gtcgcagtca ctacgcgctt
     1501 cttaacgggc gtgccttcgc cgcccatgct cttcatgccg agcggcgcga tgccgcgtcg
     1561 gttaagctcc ggcagcacgc ggcgctcgaa gctccggaag gtcgcgtcga agacatttag
     1621 ggggagctgg caggcgtcga aggggaagcc gtgcgccagc atcttgaggt gtatgtccgg
     1681 gtgcttatgg cccgtgaagc cgacgaagcg aaccttgccc tcgcgcttcg cctgctcgag
     1741 cgcctcgacc gccccgcccg gcgcgaagtg caggtcgggg tcgttctcgt aaacgacctc
     1801 gtgaatctgc cataagtcca ggtagtcggt cttgaggcgc cgcagcgact gctccaactg
     1861 ccgcatcgcg gccctcctgt cgcgcccgtg cgagcagacc ttcgtcataa ggaagacgcg
     1921 gccgcggcgc ccttcgagcg cgcggcccat cagctcttcg ctgcggccgt cgtggtactc
     1981 ccatgcgttg tccatgaagg tcagcccctc gtcaaccgcc tcgtggacga tgcgcgcggc
     2041 ctcgcgctcc gacttgacca ggccgaggtg gtagccgccc agcgcgagcg ccgtcacgcg
     2101 cgcgcccgtc cgccccagcg gccgcagagg aatctctccc ttgcctttgt cagccatcag
     2161 cttcgccctc cgtgaagcag ggtttaccac aaaggcacga aggcacgaaa gagacgcggg
     2221 cgtttctttc gtgccttcgt gccttcgtgt tgggaccggc ttagcgatag acgttctcgc
     2281 cgcggtgctt ctcgcgccac tcgcgctcga agtagtcggc gtcttcgtcg gcgcgggcgt
     2341 tgacgcccat gtagatgccg cctccgcgta tgccttcgtc gtaggtcttg gcgtgctcct
     2401 cggggatacc cgccccgacg agcgtgccca ccaagcctcc cgtcagcccg cccgcgcccg
     2461 cgccagccag agccgcggcg agcggcccgg ccacgacgag ccccgcgccg gggattatga
     2521 cgttcgtgcc gatggcggcg acggccgcga ttatcgcgcc gagcgtgccg cccacggccg
     2581 agccgacgcc catgccttcg agcgccttgc tgccgacctc ggagtcgccg tcggcgaagt
     2641 gcttattgcg cgtctcgtcc gacatcagca cgttcacgtc gtccttcgtg taaccgcgct
     2701 cggcgagcga gcggtaggcg ccctcggcgc tctcgcggtc gcggaagagg ccgtggactg
     2761 tgcggccggc gcccgcgcgt gcgcgcgtcg cggccgcgcc cgccgtcgcg gtgccgccga
     2821 tcacgtcgtt tgcttcttgg cgcgcgttgc cgatggcgtt ctcgcgctcg ccctcgcgtt
     2881 cgaggcgctc gttgtcggtc aggtcgccgt aggcgtcctt ggccgcgccc ttcacccttt
     2941 ccccgaaggc cgaagcctcc tcgccgatgc tatccttctt atgatcgctc atccgtattc
     3001 tccttcgtcg tctgtattga cagccggggc gcgccacgcg cggcggctgt acgatttaga
     3061 acctaagaac tcgttgcgca gacgcttcgg gcaagcgccg tgcctcgccg gagaacgggc
     3121 gagtgcccgg ccggctttta cggccgggca ctcgacacgg tgggctaaag ctgtataatg
     3181 cgcgtcgtta gcaagacaaa cctttgcgac gggagcttga cttacccccc ggctcgcggc
     3241 gatagtgctg aa
//
LOCUS       DASPKR010000592         2234 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1904125, whole genome shotgun sequence.
ACCESSION   DASPKR010000592 DASPKR010000000
VERSION     DASPKR010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2234)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1904125"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..800
                     /locus_tag="VD968_15900"
     CDS             <1..800
                     /locus_tag="VD968_15900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15926.1"
                     /translation="LGRELRKAGLRFRRSGFSNFGEEELIARFVAELLRGGGDRTAVD
                     IGAGDGVTGSNTYALFRQGWRGLGIEGEERRARRMARAYKRFAGVEAVCARATPDNVA
                     ELLRAHRIGRGFALLSLDIDGYDYWVLDRLLAEFRPRLVVSEINEKIPPPVRFVVKYD
                     PDFRLQHHFFGYSIASLEDLCARHSYGILALEYNNVFLAPRETDGARFLTAEEAYRAG
                     YLERPDRRERFPSNEDMEALHRLSPAEAVRFLDDFYSRHRGKYELGV"
     gene            complement(797..>2234)
                     /locus_tag="VD968_15905"
     CDS             complement(797..>2234)
                     /locus_tag="VD968_15905"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HYE15927.1"
                     /translation="PHSIAGAWMGLSAVVGAWLLRLLATRRAGLRRTPLDLPLWLFAG
                     WTVLSSLLSYEPRVSTAKLLNVATLLVFYVTQAVLTRRAAVLVACVLLASGASGVLRG
                     AWEIAVGRGVVVKALRADSPLRAQTPLREGDAVWRVGGRRVSSVEEIDAALRATPRGQ
                     RASLSVITSGEHAEWQGPLLTEEARASASPSGVTGGGPTRSFRASGWTSHYETFAEML
                     QMIAQLALGFALAFRRRDGGEEEGESGGRRRHHRPRALLAFAAYALLAAGVAMTAMRT
                     VLVAFAVGSTVLAWRSAERGRARAGVAVVVLLALAFGAVAVWRTRASGALLLQDPSAN
                     LRFQVASVAASRVPLHPFFGHGMDAVKRHWQEWGFPGSTLLHAHSTPVQLAFDRGLPA
                     LLFWLWLMLAFWRLAARAETLWRDTGDAAAHGLALGVLGALTGFLASSLVNYNFGDAE
                     AALLVWWMMGATVVLNSEAGGAAARDGV"
BASE COUNT          376 a          836 c          753 g          269 t
ORIGIN      
        1 ggctcgggcg cgagcttcgg aaggcgggcc tgcgcttcag gcgaagcggc ttctcgaact
       61 tcggcgagga ggagctgata gcgcgcttcg tcgctgagct cctgcgcggc ggcggcgacc
      121 gcacggccgt tgacataggc gcgggcgacg gcgtgacggg ctcgaacacc tacgcgctct
      181 tcaggcaggg ctggcggggc ctcgggatag agggcgagga gcggcgcgcc cgccgcatgg
      241 cgagggcgta caaacggttc gcgggcgtcg aggccgtctg cgcgcgcgcg accccggaca
      301 acgtggccga actgctgcgc gcccaccgca tcgggcgcgg cttcgcgctg ctcagcctcg
      361 acatagacgg ctacgactac tgggtgctcg accgactgct cgcggagttc cgcccccgcc
      421 tcgtcgtcag cgagataaac gagaagatac cgccgcccgt caggttcgtc gtcaagtacg
      481 accccgactt ccgcctgcaa caccacttct tcggctacag catcgcgagc ctcgaagacc
      541 tctgcgcgcg ccactcctac ggcatactcg cgctcgaata caacaacgtc ttcctggcgc
      601 cgcgcgagac cgatggcgcg cgcttcctga ccgccgagga agcctaccgc gccggctacc
      661 tcgaacgccc cgaccgccgc gagcgcttcc cctcgaacga agacatggaa gccctccacc
      721 ggctcagccc cgccgaggcc gtccgcttcc tcgacgactt ctactcgcgc caccgcggca
      781 agtacgagct gggagtctaa acgccatccc tcgcggccgc gcctcccgcc tcgctattga
      841 gcacaactgt cgcgcccatc atccaccaga cgaggagcgc ggcttctgcg tcaccgaagt
      901 tgtagttgac cagcgagctt gcgaggaagc ccgtgagcgc gcccagcacg ccgagcgcga
      961 ggccgtgcgc cgcggcgtcg cccgtgtccc gccagagggt ttcggcgcgc gccgcgagac
     1021 gccagaaggc gagcatcagc cagagccaga acagcagcgc cggcaggccg cggtcgaagg
     1081 cgagctgcac gggcgtcgag tgcgcgtgca gcaacgtcga gcccggaaag ccccactcct
     1141 gccagtggcg ctttacggcg tccatgccgt ggccgaagaa ggggtgcagc gggacgcgcg
     1201 aggcggcgac gctcgcgacc tgaaagcgca ggttggcgct cgggtcttgg agcaggagcg
     1261 cgccgctcgc gcgcgtgcgc cagacggcaa cggcgccgaa ggcgagcgcg agcaggacga
     1321 cgacggcgac gcccgcgcgc gccctcccgc gctccgcaga cctccacgcg agcaccgtcg
     1381 agcctacggc gaacgcgacc agcacagtcc tcatcgccgt cattgcgacg cccgcggcca
     1441 gcagcgcgta ggccgcgaag gcgaggagcg cgcgcggccg gtgatgacga cgacgccccc
     1501 cgctctctcc ttcttcttcc ccgccgtcgc ggcgccggaa ggcgagcgca aagcccaaag
     1561 cgagttgcgc gatcatctga agcatctcgg cgaacgtctc gtagtggctc gtccaacccg
     1621 acgcgcggaa gcttcgcgtc ggcccgccgc ccgtcacgcc cgaaggcgag gccgacgccc
     1681 gagcctcttc cgtcaacaga ggcccctgcc actcggcgtg ctccccgctg gtgatgacac
     1741 tcaggcttgc gcgctggccc cggggcgtcg cgcgcagcgc cgcgtcaatc tcttcgaccg
     1801 aagagacacg cctgccgccc acgcgccaga cggcgtcgcc ctcgcgcaaa ggggtctgcg
     1861 cccgaagcgg gctgtcggcc cggagcgcct tcacgacgac accccgcccg acggcaatct
     1921 cccatgcccc gcgcagcacg cccgacgcgc ccgacgccaa gagcacgcag gcgaccagca
     1981 cggccgcgcg ccgcgtcaga accgcctgcg tgacgtagaa gacgagcagc gtcgcgacgt
     2041 ttaggagttt cgccgtgctg acgcgcggct cgtaggagag gagggacgag agtacagtcc
     2101 agcccgcgaa gagccagagc ggcaaatcga gcggggtgcg ccgcaggccc gcccggcgcg
     2161 tcgccaggag gcgcagaagc cacgccccca cgacggcgga caggcccatc cacgcgcccg
     2221 caatcgagtg cggc
//
LOCUS       DASPKR010000593         6611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1515191, whole genome shotgun sequence.
ACCESSION   DASPKR010000593 DASPKR010000000
VERSION     DASPKR010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6611)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6611
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1515191"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            472..1443
                     /locus_tag="VD968_15910"
     CDS             472..1443
                     /locus_tag="VD968_15910"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE15928.1"
                     /translation="MKKVLVAGATGRLGAEVLCELSRRGYRTRALVRDRARLKEGAAR
                     GVEVFEADARSPGSLEGACEGCHVVVSAMGASLALGRTRERASGFREVDFLANVNLLE
                     RARREGVGKFVYVSLHGAERLRGLGYVDAHEEFVGALAASGMQHTIVRPTGFFHVFAE
                     IFRMAERGRVVIVGGGEARTNPVDERDVARECADAVEVGERELPVGGPETYTRREIAE
                     LAFEALGRPPNVTSVPAALVRALIKPVRLFDRRLYDLLEFGAAVSTRDLVAPPAGEHG
                     LRQFFRRLAGQAPAAARAPNVTAGDMRITSGELRRLSNGAERTGPRP"
     gene            complement(1453..>6611)
                     /locus_tag="VD968_15915"
     CDS             complement(1453..>6611)
                     /locus_tag="VD968_15915"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15929.1"
                     /translation="QILASLEHPYIAALLDGGSTREGLPYFVMEYIEGQPIVEYCEAR
                     QLDTNARLELFRKVCSAVHYAHQNLIIHRDIKPSNILVTGDGTPKLLDFGIAKILNPD
                     IADITLDPTLTAMRMMTPKYASPEQLRGEPATPLSDQYSLGVLLYELLTGHHPFRLER
                     AAPHEIARMVCEEEPERPSTAVSRLEEADAPGGSDGQPVTLTPELVSRHRNASVETLR
                     RELARGLDQIVMKAMRKEPHLRYASVEEFAEDLRRYSEGAPISAPSYFPSRAPKETSF
                     PARAGKKAIAVLPFKLLQFTEGSDTGNFLGIGLADALITRLSNMRSVTVRPTSSVMRF
                     ARENGDPVSAGHQLGVDYVLDGHVLRAGERVRVTVQLVSMRDGAPLWAGQFDEKHSDI
                     LSLQDSISAQVAKALVPKLTGEERAQLAKRGTNSPEAYESYLRGRYYLNMMSEEGFAK
                     AIMHFTEAAAIDPSYAAPHGGIADYYNWLGVYGVMPSRECFTAAREAATRAAALDPVS
                     AEAYTALGFASHAQWDWRAGERHLRRAIELNPEHATAHEWYCFLLASEGRFEEAEREG
                     RRALELAPNSPNIYQALGWALYHARRHEEAIAESRKALEIDANFVLAHFVVSRAHSAL
                     GQHDEALKAARAAVEISGGSPFIVALLGYASALAGRAEDARAAIAQLEEMSKMRYVSH
                     FHVALVHAALGEKTRAFELLEESFRQGDAWLVWLMVEPALDPLRSDSRFDDLLRRVRN
                     LDATAAAASAQGELDAARGGATQLQPQGPRPTDDEEAYKLYQAGRYFATRRTAEGLRQ
                     AIERLERAVERDPAFALAWAEMADCWALLNWYAEPPPAGAWERAKEAAVRAVEANERV
                     PEAHASLGFVLLHHVRDWAEAERHFKRAIELRPDNQVAHRWHAFSLSAMARHDEAIAE
                     IRRAQQISPRSPVVATAVANVLFFARRYEEAVEQCKRALDIDPGSLSTHIVLRWCYEM
                     MGRHDEALAVFEQERAFAGETATTRAKYAHVLAACGRQDEARAALAELIERRPQEWVT
                     AFEIAVIYSLLGESDEAFRWLEEAEREHAVGFTFVCVDPRLDQIRDDPRFEEVMSRVC
                     RSASDACAVEGAGDAAGHIHLSNSPAAIHATDAALRTPAGLPKAGDTGSQAGVETLRY
                     APGESPDERPQRPEDESEDGDAVKTARAAAPRATTTTAAAPAAGNGHAAPAVAVDGAA
                     AVASSRASSARTAPAEGARLRRGARARALAAAAAVLLVAGAAVAFYFYSGARQSTGID
                     SIAVLPFANVNSDPDTEYLSDGIAEHLINQLSQLPSLRVMARTTAFTYKGKSVDPREA
                     GRALGVGSVLVGRVARNGDQIVIQAELVRVSDGAQLWGERYSRKLSDLLIVQQDIAGD
                     ILDKLRLRLSGEEERQIARGYTRDPEAYQLYLQGEYHRNRATPEDIKRSIELYNLAVA
                     RDPDYALAYVGLAFAYRLLPAYGSMTPHEAFPRARAAANKALQLDPSLAIAHVPLASI
                     RFVYDWDFAGAEGEYKQAIQLNPNSAEAHFAYATFLTALERFPEAEAEFKTAKRLDPL
                     SVNITSIYGWSLYVAGRYEEALELSREALERDPNHARAYLNMGEVYTMQGRYDEALEV
                     LRKAKQMSRDPLVDIALGHLYAVWGRHDEAHKVLEELKVRERNGEVAPFLISVVYAGL
                     GDKDQAFKLLEQSFQERSNWMVLLKVGRRLAPLKDDPRYQSLARRIGFPK"
BASE COUNT          914 a         2158 c         2475 g         1064 t
ORIGIN      
        1 aaagcgcgag cttcggcgcg ccccgcggcg cgagggcaac cgggtgggcg tcaccgtatt
       61 cacgcactca taagacgggc gagggggaat cgaggggggc tcctgggaag ggtcacggct
      121 ttgagaaggg gttttcgcgc ggcgcccggg gcgggcgccg cgcctttttt ttatgggcgg
      181 aaaaaaattc ctgccgggtg attcaatccg cgcggctttt gcgcgttaac ctgtgtaagg
      241 ggatgcgcgg gacggcctaa cttcattcct cttaaccctt acacgtcata cgccccgcgc
      301 tgagggtttt tacgccacac ggcaaaatgt agggcgggca ggggggctgc cggcgtcgcg
      361 cccccgtcgc tggaaggcgg cgggccgggc gcgccgtcgg cgcattggtc ggccggcgcg
      421 tcgtcgcgcg ccggaaaact tttcttcacg tggggaggaa cgggtgagtt aatgaaaaaa
      481 gtcctggtgg cgggggctac ggggcggctg ggcgcggagg tgctgtgcga gctgtcgagg
      541 cgcggctacc gcacgcgcgc tctcgtgcgg gacagggcgc gacttaagga gggcgcggcc
      601 cgcggcgtcg aggtcttcga ggccgacgcg cgctcgcccg gctcgctcga aggcgcctgc
      661 gagggctgcc acgtggtcgt ctctgcgatg ggcgcgagcc tggccctcgg ccgcacgcgc
      721 gagcgcgcct cgggcttccg cgaggttgac ttcctcgcca acgtgaacct gcttgagcgc
      781 gcgcggcgcg agggcgtcgg caagttcgtt tacgtgtcgc tgcacggcgc cgagcggctg
      841 aggggcctcg gttacgtgga tgcgcacgag gagttcgtcg gcgcgctcgc cgcgagcggc
      901 atgcagcaca caatcgtccg gcccacgggc ttcttccacg tcttcgccga aatcttcagg
      961 atggccgagc gcgggcgcgt cgtgatcgtc gggggcggcg aggcgcgcac gaaccccgtt
     1021 gacgagaggg acgttgcgcg agagtgcgcc gacgccgtcg aggtgggcga gcgcgagctt
     1081 cccgtcggcg gccccgagac ctacacgcgc cgggagattg ccgagctcgc cttcgaggcg
     1141 ctcggccgcc cgccgaatgt gacgagcgtt cccgccgctc tcgtgcgcgc tctcatcaag
     1201 cccgtgcgcc tattcgaccg gaggctttac gaccttctgg agttcggcgc ggccgtgagc
     1261 acgcgcgacc tcgtggcgcc gcccgcgggc gagcacggcc tgcgccagtt cttccgaagg
     1321 ctcgcgggcc aggccccggc cgccgcgcga gcgccaaacg tcacagctgg cgacatgagg
     1381 ataacctcgg gcgagctgcg ccgcctctcg aacggggcgg agcgcactgg cccgaggccc
     1441 tgacctgtcg gcttatttgg ggaagcctat tcgccgggcg aggctctggt agcgcgggtc
     1501 gtccttgagc ggggcgaggc ggcggccgac cttcagtagc accatccagt tcgagcgctc
     1561 ctggaaagac tgttccagaa gcttgaaggc ctgatccttg tcgcccaggc ccgcatagac
     1621 gaccgagatg aggaacggcg cgacctcgcc gttgcgctcg cgcaccttca gctcttcgag
     1681 gaccttgtgc gcctcgtcgt ggcggcccca gacggcgtag aggtggccga gcgctatgtc
     1741 aacgagcggg tcgcgcgaca tctgcttggc cttgcgcagc acttcgagcg cctcgtcgta
     1801 gcgcccctgc atcgtgtaaa cctctcccat gttgaggtag gcgcgcgcgt ggttcgggtc
     1861 gcgctcaagg gcctcgcgcg atagctccaa cgcctcctcg taccgccccg ccacgtagag
     1921 cgaccagccg tagatggaag tgatgttgac cgagagcggg tcgagccgct tcgccgtctt
     1981 gaactcggct tccgcctccg ggaaacgctc tagggccgtc aggaaagtgg cgtaggcgaa
     2041 gtgggcctcg gcgctgttcg ggtttagctg gatggcctgc ttgtactcgc cctccgcgcc
     2101 ggcgaagtcc cagtcataga cgaaccttat cgaggcgagc ggcacgtgcg ctatggcgag
     2161 cgacgggtcg agctgtagag ccttgttggc ggcggcgcgg gcgcggggga acgcctcgtg
     2221 cggcgtcatc gagccgtaag ccggcagcag ccggtaggca aaggcgagcc cgacgtatgc
     2281 gagcgcgtag tcggggtcgc gcgccaccgc caggttgtat agctctatgc tgcgcttgat
     2341 gtcctcgggc gtggcgcggt tgcggtggta ctcgccctga aggtagagct ggtaggcctc
     2401 ggggtcgcgc gtgtagccgc gcgctatctg gcgctcctcc tcgccggaga ggcgcaggcg
     2461 cagcttgtcg agtatgtcgc cggcgatgtc ctgctggacg atgagcaggt ctgagagctt
     2521 gcggctgtag cgctcgcccc agagctgcgc gccgtcggag acgcgcacga gctctgcctg
     2581 tatcactatc tggtcgccgt tgcgcgccac gcggccgacg agcaccgagc cgacgcccaa
     2641 cgcgcggccc gcctcgcgcg ggtcaaccga cttgcccttg taggtgaagg ccgtcgtgcg
     2701 cgccatcacg cgaaggctgg gcagttgcga gagctggttt atgaggtgct cggcgatgcc
     2761 gtccgagagg tactcggtgt cgggatcgga gttgacgttg gcgaagggca gaaccgctat
     2821 agagtctatc cccgtgctct gccgcgcgcc gctgtagaag tagaacgcga ccgcggcgcc
     2881 cgcgacgagc agcaccgcgg cggcggcggc gagcgcgcgc gccctcgcgc cgcggcgcag
     2941 gcgagcgcct tcggccggcg cggtgcgcgc cgacgaagcg cgggaagagg cgacggcggc
     3001 ggcgccgtca accgcgaccg ccggggcggc atggccgttg cccgcggccg gggctgccgc
     3061 cgttgtggtg gtggcgcgcg gcgccgcggc gcgggcggtc ttgacggcgt cgccgtcttc
     3121 actttcgtct tccgggcgct gcggcctctc gtcggggctc tcgccgggcg cgtagcgcag
     3181 cgtctcgacg ccggcctgcg agccagtgtc gcccgccttc gggagccccg cgggcgtgcg
     3241 cagggctgcg tccgtcgcgt gaatcgcggc gggcgagttg gagaggtgta tgtggccggc
     3301 cgcgtcgccc gcgccttcga cggcgcaggc gtcggaggcc gagcggcaga cgcgcgacat
     3361 cacctcctcg aagcgcgggt cgtcgcgtat ctggtctagc cgcgggtcaa cgcagacgaa
     3421 ggtgaagccg acggcgtgct cgcgctcggc ctcttcgagc cagcggaacg cctcgtcgct
     3481 ctcgccgagc agagaataga tgaccgcgat ctcgaaggcc gtcacccact cctgcgggcg
     3541 ccgctctatc aactcagcga gcgcggcgcg ggcctcgtcc tgtcggccgc aggcggcgag
     3601 cacgtgcgcg tacttggcgc gcgtggtggc cgtctccccg gcgaaggcgc gctcctgctc
     3661 gaagacggcg agcgcttcgt cgtgccgccc catcatctcg tagcaccagc gcaagacgat
     3721 gtgcgtggag agcgagccgg ggtcaatgtc gagcgcgcgt ttgcactgct cgaccgcctc
     3781 ctcgtagcgg cgcgcgaaga agaggacgtt ggcgacggcc gtggcgacca ccggcgagcg
     3841 cggcgaaatc tgctgcgcac gccttatctc cgcgatggcc tcgtcgtggc gcgccatcgc
     3901 cgacaggctg aaggcgtgcc agcggtgcgc gacctggttg tcgggccgga gttctatggc
     3961 gcgcttgaag tggcgctcgg cctcggccca gtcgcggacg tggtgcagta ggacgaagcc
     4021 cagagaggcg tgggcctcgg gtacgcgctc gttcgcctcg acggcgcgca cggccgcctc
     4081 cttcgcgcgc tcccatgccc cggcgggggg cggctcggcg taccagttca ggagcgccca
     4141 gcagtcggcc atctcggccc acgcgagcgc gaacgcgggg tcgcgctcga ctgcgcgctc
     4201 aagccgctcg atggcctgcc gcagcccctc ggccgtgcgg cgcgtggcga agtagcggcc
     4261 ggcctggtag agcttgtaag cctcctcgtc gtcggtcggg cgcggcccct gcggctgcaa
     4321 ctgcgtggcg ccgccgcgcg cggcgtccag ttcgccctga gccgaggccg cggccgcggt
     4381 cgcgtcgagg tttcggacgc ggcgcaagag gtcgtcgaag cgggagtcgg agcgcagggg
     4441 gtcgagcgcc ggctcgacca tgagccagac gagccacgcg tcgccctgcc ggaagctctc
     4501 ttcgagcagc tcgaaggcgc gcgtcttctc gccgagcgcc gcgtggacga gcgcgacgtg
     4561 gaagtgcgag acgtagcgca tcttcgacat ctcttcgagc tgcgctatcg ccgcgcgcgc
     4621 gtcctccgcg cggccggcga gcgccgaggc gtagccgagc agggcgacga tgaaggggct
     4681 gcccccggag atttcgactg cggcgcgcgc ggccttgagt gcctcgtcgt gctggcctag
     4741 cgcggagtgc gcgcggctga cgacgaagtg cgcgaggacg aagttggcgt ctatctctaa
     4801 agccttgcgg ctctcggcga tggcctcctc gtggcggcga gcgtggtaga gcgcccagcc
     4861 gagggcctgg tagatgttcg gcgagttcgg cgcgagctca agcgcgcggc gcccctcgcg
     4921 ctcggcctcc tcgaagcgac cctcgctcgc gagcaggaag cagtaccact cgtgagcggt
     4981 ggcgtgctcg gggttcagtt ctatggcgcg gcgcaggtgt cgctcgcccg cgcgccagtc
     5041 ccactgcgcg tggctggcga agccgagggc cgtgtacgcc tcggccgaga cggggtctaa
     5101 ggcggcggcg cgcgtcgcgg cctcgcgcgc ggccgtgaag cactcgcgcg agggcatcac
     5161 gccgtaaacg ccgagccagt tgtagtagtc ggcgatgccg ccgtgcgggg cggcgtatga
     5221 ggggtcaatc gccgccgcct ccgtgaagtg catgatggcc ttggcgaagc cctcctcgga
     5281 catcatgttg aggtagtagc ggccgcgcag gtaagactcg taagcctcgg gcgagttcgt
     5341 gcctcgcttg gcgagctgcg cgcgctcctc gcccgtgagc ttcggcacga gcgccttcgc
     5401 gacctgcgcc gagatggagt cctgcaagga gaggatgtca gagtgcttct cgtcgaactg
     5461 accggcccag agcggcgcgc cgtcgcgcat gctcacgagc tggacggtga cgcgcacgcg
     5521 ctcgccagcg cgcaggacgt gcccgtccag gacgtagtca acgcctagct ggtggcccgc
     5581 ggagacgggg tcgccgttct cgcgcgcgaa ccgcatcacg gagctggtgg gccgcacggt
     5641 cacgctacgc atgttggaga ggcgcgtgat gagcgcgtcg gcgaggccga tgccgaggaa
     5701 gttgccggtg tccgaccctt cggtgaattg caggagcttg aagggcagca ccgcgatcgc
     5761 cttcttgccg gcgcgcgccg ggaacgacgt ctccttcggc gcgcgggaag ggaagtagga
     5821 cggcgccgag atgggcgcgc cctccgagta gcgccggagg tcttcggcga actcctcgac
     5881 cgaggcgtag cgcaggtgcg gctccttgcg catggccttc atgactatct ggtcgagccc
     5941 gcgcgcgagc tcgcggcgca gcgtctcgac gctcgcgttg cggtggcggc tcaccagctc
     6001 gggcgtgagc gtgacgggct ggccgtccga gccgccgggg gcgtccgctt cttccagacg
     6061 gctgacggcc gtgctcggcc tctcgggctc ctcctcgcag accatgcgcg caatctcgtg
     6121 cggcgcggcc cgttcgagcc ggaacgggtg gtggccggtg agaagctcgt agagcagcac
     6181 acctaaagag tactggtcgg agagcggcgt ggccggctcg ccgcggagct gctcgggcga
     6241 ggcgtacttc ggcgtcatca tcctcatcgc cgtcagcgtc gggtcgagcg tgatgtcggc
     6301 gatgtcgggg ttcagaatct tcgcgatgcc gaagtccaga agcttcggcg tgccgtcgcc
     6361 cgtgacgagt atgttcgacg gctttatgtc gcggtggatg atgaggttct ggtgcgcgta
     6421 gtggaccgcc gagcagacct tccggaagag ctcgagccgc gcgttcgtgt cgagctgacg
     6481 cgcctcgcaa tattcgacga tcggctgccc ctcgatgtac tccatgacga agtaggggag
     6541 cccctcgcgc gtggagccgc cgtcgaggag ggcggcgatg tacgggtgct cgaggctggc
     6601 gaggatctgg c
//
LOCUS       DASPKR010000594         5190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_222761, whole genome shotgun sequence.
ACCESSION   DASPKR010000594 DASPKR010000000
VERSION     DASPKR010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5190)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5190
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222761"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..822
                     /locus_tag="VD968_15920"
     CDS             <1..822
                     /locus_tag="VD968_15920"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HYE15930.1"
                     /translation="NAIIPPLSLEGPVLSIRRFGKEPLRMAALIEKNALTKDMAEMFE
                     MCVKARLNVLISGGTGAGKTTLLNALSSYIPADERIITIEDSAELQLQQPHVVRLETR
                     PPNIEGRGEVTQRDLVKNALRMRPDRIVIGEVRGGEAIDMLQAMNTGHDGSLTTIHAN
                     TPRDAVARLETMIQMTGMRLSDRAMRQQIASALDLVIQAARLSDGTRRVTSISEITGM
                     EGETITMQEIFQFERKGVDPQGKVVGRFRPTGVRPRFAERIKQYGMQLPRVLFED"
     gene            936..1898
                     /locus_tag="VD968_15925"
     CDS             936..1898
                     /locus_tag="VD968_15925"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HYE15931.1"
                     /translation="MIPFLVFMACMFAVFGAYLLATRQSEAKRRRLQQRLSDALLYTR
                     DTDDAEVQLARQELLSEIPALNRLLVRARAATRLRRLLDQADLHITVSRLLMLSLMAG
                     MLAALAVSMLTISKLAMAGAGVVAAAVPFAHVAYKRSRRLRHFLELLPDTLELMSRAL
                     QAGHAFAESLHMVANEMPEPISTEFRKTYEEQNLGLSLKLALENLCERVPLLDLRFCV
                     TAILIQRETGGNLAEILEKVSYTIRERFRILEDLNTLTTSSRMSAWILCGLPAFVALA
                     VTVMNPDYMSVLWRDPRGHNLLFAAAFMQVIGMLIIRKILRIRI"
     gene            1932..2861
                     /locus_tag="VD968_15930"
     CDS             1932..2861
                     /locus_tag="VD968_15930"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HYE15932.1"
                     /translation="MLIITVSIFVFVTLGVTALYWLMFRPPSAATERLKRMGDGDGQP
                     AAAPSVLAEETPMGALAGRVAGPLHRLAPPSAAEAKKLQKQLMQAGYRSENAPVVFRA
                     LQLASLVGFPGFVAVVCALVGRPLDSAVTWILVAFIVGFFLPRFALRRITASRQLRLR
                     WGLADALDLMVVSVEAGLGLNAALVRVGDELKGVHPDISEELELTNLEIRVGRERDEA
                     LRNLAERTGVDDLRSLVAMLIQADRFGTSIAKAVRVYADSLRTKRRQRAEQAAQKAAV
                     KLLIPLALFLFPTLFIIILGPAAINLIDTFGKM"
     gene            2874..3866
                     /locus_tag="VD968_15935"
     CDS             2874..3866
                     /locus_tag="VD968_15935"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15933.1"
                     /translation="MLKRRVTTILATLLLAFSVAALWSAEGDERDGDTDTNVVAASGA
                     EAGASGAEAPKKKGNRFFRALKAPFKAVGHLFGGRGDGDSGKLARMSERDAARFESVG
                     VVRVEDKTTERTKVTGGEGTARECLDRGRALLAENRLNEAIEQLSRAASLDPKLSQAH
                     SLLAVAYDRKGLRDRAKESYERAVDADETDAQALNNLGYSLYVNGNYRAAVERLKRAA
                     RLAPGDARILNNLALAQFRLGKYDDAYKSFARAGGAFNGHTNLAALLLRSGREDKAVE
                     HLESARELRPYSANVLRQLADLYERAGRRDKAEEARHALEAGDARQQHLAGGGE"
     gene            3896..>5190
                     /locus_tag="VD968_15940"
     CDS             3896..>5190
                     /locus_tag="VD968_15940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15934.1"
                     /translation="MTHTAILTRAEIETMGPPVLEDLGEADVPASFLCDLALKHVAQA
                     PEPTTRSISEATRLPRALVEEILIHLSREKMIEVKGQIAVGATRYAMLDRGWERVARV
                     RDLCGYVGPAPVSLRDYAHMMRLQAVPARAATPDMVRAAFRDLVLPESLLQTMGCVIN
                     SRRSLFITGPAGTGKTAVAERINAGLPGFIWVPYSVEVDGQIIRVFDAHNHRPAPEAE
                     VPSDHDRRWVLIERPLVIVGGELTLDDADLQWSEAARFYEAPFQMKSNGGTLVIDDFG
                     RQRCEPHDLLNRWIVPLEKRIDYLTLHTGKKIEVPFEQLVVFSTNLDEKDLVDEAFLR
                     RMGYRARVEAPTPAAYVEIFKRAAYTRGLRVDQACLDHILNNYMLERRQMKSCEPRDL
                     LDRITDICLFEGRTPEINARLIDAAWRNYFGASHGFGAK"
BASE COUNT          905 a         1821 c         1667 g          797 t
ORIGIN      
        1 aacgcaatca tcccgccgct ctcgctcgaa ggcccggtgc tctccatccg ccgcttcggc
       61 aaggagccgc tgcggatggc cgcgctcatc gagaagaacg cgctcacgaa ggacatggcc
      121 gagatgttcg agatgtgcgt aaaggcgcgc ctgaacgtcc tcatctccgg cggcacgggc
      181 gcgggcaaga cgacgctcct gaacgccctc tcctcctaca tccccgccga cgagcgcatc
      241 atcacgattg aggactccgc cgagcttcag ctacagcagc cgcacgtcgt aaggctggaa
      301 acacgcccgc ccaacatcga ggggcgcggc gaggtcacgc agcgcgacct cgtgaagaac
      361 gccctgcgca tgcgccccga ccgcatcgtc ataggcgagg tgcgcggcgg cgaggccatt
      421 gacatgctcc aggccatgaa cacgggccac gacgggtcgc tcacgaccat acacgccaac
      481 acgccgcgcg acgccgtcgc ccgtctggag acgatgattc agatgacggg catgcggctg
      541 tccgaccgcg ccatgcggca gcagatagcc tccgccctag acctcgtcat acaggccgcg
      601 cgcctctccg acggcacgcg ccgcgtcacg tccatctctg agataacggg catggagggc
      661 gagacgataa cgatgcagga gatcttccag ttcgagcgca agggcgttga cccgcagggc
      721 aaggtcgtcg gccgcttccg cccgaccggc gtccgcccgc gcttcgctga gcgcatcaag
      781 cagtacggca tgcaactgcc gcgcgtcctc ttcgaggact agcggtcagc ggtcagcttt
      841 cagcaatcag catacgcccc gccgcacggc gggcgctgac aggaaagccg gccgcccgtg
      901 aacggagaaa agctgaaatc tgagagctta aaacaatgat cccctttcta gtcttcatgg
      961 cctgcatgtt cgccgtcttc ggcgcgtacc ttctggctac gcgccagtcg gaggcgaagc
     1021 gcaggcgctt gcagcagagg ctctctgatg cgctgctcta cacgcgcgac accgacgacg
     1081 cggaagtcca gctcgcccgg caggagcttc tgagcgagat acccgcgctc aaccgcctgc
     1141 tcgtccgcgc gcgagcagcg acgcgcctgc gccggctgct cgaccaggcc gacctgcaca
     1201 taacggtctc gcgcctgctg atgctctcgc tgatggcggg gatgctcgcg gcgctggccg
     1261 tctcgatgct caccatctcg aagctggcga tggccggggc gggagtcgtc gccgcggccg
     1321 tccccttcgc gcacgtcgcc tacaagcgca gccgcaggct caggcacttc ctcgaactcc
     1381 tgcccgacac gctggagctt atgagccgcg cgctacaggc cggccacgcc ttcgccgagt
     1441 cgctccacat ggtcgccaac gagatgcccg agcccatctc taccgagttc cgaaagacct
     1501 acgaggagca gaacctcggc ctgtcgctca agctcgcgct ggagaacttg tgcgagcggg
     1561 tgccgctcct cgacctgcgc ttctgcgtca cggccatact cattcagcgc gagacgggcg
     1621 gcaacctcgc cgagatactc gaaaaagtct cctacacgat ccgcgagcgc ttccgcatcc
     1681 tcgaagacct gaacacgctg acgaccagct cgcgtatgtc ggcgtggatt ctgtgcggtc
     1741 tgccggcctt cgtcgcgctg gccgtcaccg tgatgaaccc cgattacatg agcgtgctct
     1801 ggcgcgaccc ccgcggccac aacctcctgt tcgccgccgc cttcatgcag gtaatcggca
     1861 tgctcatcat caggaagatt ctgaggataa ggatttagaa gctgagagct gagagctgag
     1921 agctgaaagc tatgttgatc atcaccgtct ccatattcgt cttcgtcacg ctgggcgtga
     1981 cggccctgta ctggcttatg ttccggccgc cgagcgcggc tacggagcgg ctgaagagga
     2041 tgggcgacgg cgacgggcag cccgccgcgg cgccttcggt gctggccgaa gaaacgccga
     2101 tgggcgcgct cgcgggccga gtggcggggc cgctgcacag gctcgcgccg ccttcggctg
     2161 ccgaggccaa aaaacttcag aagcagttga tgcaggccgg ctaccgctct gagaacgcgc
     2221 cggtcgtgtt ccgcgccctt cagctcgcct cgctcgtagg cttccccggc ttcgtcgccg
     2281 tcgtgtgcgc gctcgtcggc cgcccgctcg acagcgccgt aacgtggatt ttggtcgcct
     2341 tcatcgtcgg cttcttcctg ccgcgcttcg cgctccggcg catcacggcc tcgcggcagc
     2401 tccgccttcg ctggggcctc gccgacgcgc tcgacctgat ggtcgtctcc gtagaggcgg
     2461 ggctgggctt aaacgccgcg ctcgtccgcg tgggcgacga gctgaagggc gtgcacccgg
     2521 acataagcga ggagcttgag cttacgaacc tcgaaatccg cgtcgggcgc gagcgcgacg
     2581 aggcgctccg caacctcgca gagcgcacgg gcgttgacga cctccgaagc ctcgtcgcca
     2641 tgctcataca ggccgaccgc ttcggcacct ccatcgcgaa ggccgtccgg gtctatgccg
     2701 actcgctacg cacgaagcgg cgccaacgcg ccgagcaggc cgcgcagaag gccgccgtca
     2761 agctcctgat accgctcgcc ctcttcctct tcccgacgct cttcataatc atcctcggcc
     2821 ccgcggccat caacctcatt gacactttcg gcaagatgta aagagggaag ctcatgctca
     2881 agcgtagggt cacgaccatc cttgcaactc tcctgttggc gttctcggtc gccgctctct
     2941 ggagcgccga gggcgacgag cgcgacggcg acacggacac caacgtcgtc gccgcgtcgg
     3001 gcgcggaggc tggtgcgtcg ggcgcggagg cgccgaagaa gaagggcaac cgcttcttcc
     3061 gcgcgctcaa ggcgccgttc aaggccgtcg gccatctctt cggcggacgc ggtgacggcg
     3121 actcgggcaa gctcgcgcgc atgagcgagc gcgacgccgc gcgcttcgag agcgtgggcg
     3181 tcgtgcgcgt cgaggacaag acgaccgagc ggacgaaggt gacgggcggc gaaggcacgg
     3241 cgcgcgagtg cctcgaccgc ggccgagccc tgctcgccga gaaccgcctg aacgaggcca
     3301 tcgagcagct ttcgcgcgcc gcgtcgctcg acccgaagct cagccaggcg cacagcctgc
     3361 tcgcggtcgc gtacgaccgc aagggcctgc gcgaccgcgc caaagagtcc tacgagcgcg
     3421 ccgttgacgc ggacgagacg gacgcgcagg cgctcaacaa cctcggctac tcgctctacg
     3481 tcaacggcaa ctaccgcgcg gcggtcgagc gcctgaagcg cgccgcccgc ctcgcgcccg
     3541 gggacgcgcg catactcaac aacctcgcgc tcgctcagtt ccgcctcggc aagtacgacg
     3601 acgcctacaa gagcttcgcg cgcgcgggcg gggccttcaa cggccacacc aacctcgccg
     3661 cgctcctgtt gcgctcgggc cgcgaggaca aggccgtcga gcatctcgaa tccgcgcggg
     3721 aactacggcc ctactccgcg aacgtgctgc gccagctcgc agacctctac gagcgcgcag
     3781 gccgccgcga caaggccgaa gaggcccgcc acgccctcga agccggggac gcgcgccagc
     3841 agcatctcgc gggcggcggc gagtagaaat cagtagccag tcgggaaggt gagcgatgac
     3901 acacacggcg attcttacgc gcgccgagat agagacgatg gggccgcccg tgctcgaaga
     3961 tttgggcgag gcggacgtac ccgcgagctt cctctgcgac ctcgccctga agcacgtcgc
     4021 gcaggcgccc gagcccacga cgcgctcgat ctcggaggcg acgcggctgc cgcgcgcgct
     4081 cgtcgaggag atcctcatac acctctcgcg cgagaagatg atcgaggtga aggggcagat
     4141 agccgtgggc gccacgcggt acgcgatgct cgaccgcggg tgggagcgcg tcgctcgcgt
     4201 gcgggatttg tgcggctacg tcggccccgc gcccgtctcg ctgcgcgact acgcacacat
     4261 gatgcgcttg caggccgtgc ccgcgcgcgc cgccacgccc gacatggtgc gcgcggcctt
     4321 ccgcgacctc gtgctgcccg agtcgctctt gcagacgatg ggctgcgtca tcaactcgcg
     4381 ccgctcgctc ttcatcacgg ggccggcggg gacgggcaag acggccgtgg ccgagaggat
     4441 aaacgcgggg ctccccggct tcatctgggt gccttactcg gtagaggttg acgggcagat
     4501 cataagagtc ttcgacgccc acaaccacag gcccgcgccg gaggcggagg tgccgagcga
     4561 ccacgaccgc cgatgggttc tgattgagcg cccgctcgtc atcgtcggcg gcgagctgac
     4621 gctcgacgac gcggacttgc agtggagcga ggcggcgcgc ttctacgagg cgccgttcca
     4681 gatgaagtcg aacggcggca ctctcgtcat agacgacttc ggccgacagc gctgcgagcc
     4741 tcacgacctc ctcaaccgct ggatcgtccc tctggagaag cgcattgact acctgacgct
     4801 ccacacgggg aagaagatag aggtgccgtt cgagcagctc gtcgtcttct cgacgaacct
     4861 cgacgagaaa gacttggtgg acgaagcgtt ccttcgccgc atgggctacc gggcgcgcgt
     4921 ggaggcgccg acgccggccg cctacgtcga gattttcaaa cgcgccgcgt acacgcgcgg
     4981 cctgcgcgtg gatcaggcgt gcctcgacca catactcaac aactacatgc tcgagcgccg
     5041 gcagatgaaa tcgtgcgagc cgcgcgacct gctcgaccgc atcaccgaca tctgcctctt
     5101 cgaggggcgc acgcccgaaa tcaacgcgcg cctcatagac gccgcttggc gcaactactt
     5161 cggcgcctcg cacggcttcg gcgcgaagga
//
LOCUS       DASPKR010000595         8660 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_222798, whole genome shotgun sequence.
ACCESSION   DASPKR010000595 DASPKR010000000
VERSION     DASPKR010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8660)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8660
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222798"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..219
                     /locus_tag="VD968_15945"
     CDS             <1..219
                     /locus_tag="VD968_15945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15935.1"
                     /translation="LSPFNGSDLGQSTDARIHRFIVGYAAGPRVQITLTGFFTRRANG
                     LLGPFTATPPGSLDRTLTRLQLDTVFRF"
     gene            571..1119
                     /locus_tag="VD968_15950"
     CDS             571..1119
                     /locus_tag="VD968_15950"
                     /inference="COORDINATES: protein motif:HMM:NF044704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HYE15936.1"
                     /translation="MGFKVGQKVVYPNHGIGTIEQIESKQIGASSLPFYTLRLAATNT
                     VVLVPVANASEVGLRSPITSGECELLLKHLSDDFRGAASDWKDRFKEFTEKMRTGDIF
                     AVAEVLKNLTYLSHSKPLSFREQRMLERARYLVISELAAVCRQPECNVEPRVEEALRR
                     ACAKHERRPAATRIAAGATAGH"
     gene            complement(1275..1667)
                     /locus_tag="VD968_15955"
     CDS             complement(1275..1667)
                     /locus_tag="VD968_15955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15937.1"
                     /translation="MRLFATILLCCALCVLAASAASAQKGSKSKSFHTEGVFSNITAG
                     PGGDYGGMQVYLTDSDGQFYALVTIAQGVLLPPVLVKANVQVEERKIEFELPDGEDSR
                     KFTGVVTADGMSLTEGGQKIFLKRKCLD"
     gene            complement(1694..2215)
                     /locus_tag="VD968_15960"
     CDS             complement(1694..2215)
                     /locus_tag="VD968_15960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15938.1"
                     /translation="MKILLPVCALALLGAAPAPPKFSSSYTDLKTQCKPLSEGEPQGD
                     DTPLRCEGYGGYEVRIDFSAASSHVGVQPAGGSEERISLAEQPLDYDSKRKIEWRFAD
                     GKPFAVILRVDKAKPDLDPSEMWRPENKTGESLLVKGLKGFEHIDFEVDARSPNANAK
                     AREMADAAYAKGR"
     gene            complement(2232..2621)
                     /locus_tag="VD968_15965"
     CDS             complement(2232..2621)
                     /locus_tag="VD968_15965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15939.1"
                     /translation="MKKTLTAFALPAVLLFAAAAALAGTPTAPSIPRGEQDFILVNST
                     GVVINKLYVSPHEKDDWEEDILGVDTLPSGQSVKITFDREEEAAMWDLRVEDSEGNFI
                     VWENLNLLEISKVTLHYKDGRAWAEVE"
     gene            2971..4920
                     /locus_tag="VD968_15970"
     CDS             2971..4920
                     /locus_tag="VD968_15970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15940.1"
                     /translation="MAIVKFVGKETAKQILKEFTGPGIDQIKTLLLGEEEDVVQQYLE
                     KLDRQMRDVVLSLKDIELRQIFLDYNRADEELEHLFDLYHGQIDKPVNHRDRQNTCSY
                     ILDINKGVSERARRMISAFRHVNLPAYKTFFQEYSDKLAGEYHDVHTYLDKMGAVMNH
                     LRMNLIEAKVLREACYSEIADKERATDLALTYADVRRVERHYEKVVGPAVELKNQLQG
                     LAEAGEPVRLKHLATGKYLTTFEGGDPLSRHAPFGDERMPQVYLYGMAKGQVETYREA
                     TPVQVHDDVKVIFIKKEVTVESKSQEWRVVKVEGDDKRVRFAFQLRGGGKALDGVRDG
                     RVYINPLPADRKNEHMWWEPVMSRGKDGKFEPGVFILRHKPTGLALDGDGARVYAENG
                     RKPDYDNAHMKWRFDQKNAMEPGESLAPGEELVSHNQRYALRYLANGNLELFDRDRKR
                     VLWETHTANRGAWRCVMQKDDGLFAVYAKEKEAVWSTNRRGSLFAGSRLVLRDGFFEV
                     IDREGDPVYDTRWLLRREQENALGPDEFLAPGERLVSQNRRYELRYLHNGNLELYDGV
                     DNKVCWHSGTAGTGAWRCVMQRRNGQFVVYAKEQAPVWATKPDNSKFADSTLTLLDDG
                     TLRLGTPENNIYWKKDVKGDESWKS"
     gene            complement(4969..6609)
                     /locus_tag="VD968_15975"
     CDS             complement(4969..6609)
                     /locus_tag="VD968_15975"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HYE15941.1"
                     /translation="MGNRRLSRRGAGRAALALCVCLLVAAAPLAQTGGVRPEWRAALE
                     EVKAESMRGHLSFLASDALEGRRAPSRGLDIAAEYIAAQFRRAGLEPAGDDGYFQTAD
                     WRLSARDAAAFRLSFAGGPAPAPAVRPEQIGVGFSTGGFSLWEPEGELSLTGARLLKL
                     DPTNVPAALTREQAAGRVVATEFPAVPRGNFAGALQVLRERNDFLARMRSLGVPLVLA
                     FDRRAERARGGRAPRVIDPERSGAAGRNVPELGIGGEPTAPLIVVHGAEAARFFDSLP
                     SGEAGATADVRVPAPAETPVKLRNVAGILRGSDAALKGEFVVVSAHYDHIGLVANCEA
                     GADCVNNGANDDGSGTVGVVEIASALARLKTRPKRSILFIAFFGEELGLVGSRYYVRR
                     PLVPLEKTVAQINMEQVGRTDDADEGPQLGRATVTGFDYSDLGATLKAAGAPLGFEFY
                     KHPRNSDPYFSRSDNQALADAGVPAHTVGVTFRFPDYHAPGDHWEKIDYANMERVVRA
                     VALGALTVADAERAPRWDESNPKAAADVEAWRRLRARQ"
     gene            complement(6612..6890)
                     /locus_tag="VD968_15980"
     CDS             complement(6612..6890)
                     /locus_tag="VD968_15980"
                     /inference="COORDINATES: protein motif:HMM:NF016162.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF427 domain-containing protein"
                     /protein_id="HYE15942.1"
                     /translation="MKATWKGAVLAESDDTVVVEGNHYFPAGSINREHFRESHTHTTC
                     PWKGEASYYDVVVNGETNKDAAWYYPSTKEAAKQIEGRVAFWLGVKVE"
     gene            complement(6909..8591)
                     /gene="ettA"
                     /locus_tag="VD968_15985"
     CDS             complement(6909..8591)
                     /gene="ettA"
                     /locus_tag="VD968_15985"
                     /inference="COORDINATES: protein motif:HMM:NF008775.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0045900 - negative regulation of
                     translational elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HYE15943.1"
                     /translation="MSDQPNKIIYSMVGVSRHYDKRAVLKDIYLSYFYGAKIGVIGLN
                     GSGKSSLLRIIAGEDKGSTGETVLSPGYTVGYLEQEPRLDESKTVRETIEVAVVETVA
                     LLKEFDEINARFGEEMPDDEMNKLLERQGEVQEKLDALDAWDLDSRLEMAMDALRCPP
                     GDTPVRVLSGGERRRVALCRLLLQKPDILLLDEPTNHLDAESVAWLEQHLQQYAGTVI
                     AVTHDRYFLDNVAGWILELDRGQGIPWKGNYSSWLEQKQERLRREEKQESERQKTLER
                     ELEWIRMAPKARRAKGKARINSYEALLAQQTEQRARELEIYIPPGPRLGAVVIEADSV
                     SKAYGDRLLVEGMTFKLPPGGIVGVIGPNGAGKTTLFRMITGEEQPDAGTIRVGETVQ
                     LGYVDQSRTLDPDKSIWEEISGGADTVKLGSREVNSRAYVGRFNFSGSDQQKKVGMLS
                     GGERNRVHLAKMLKEGANVLLLDEPTNDLDVNTMRALEEALENFAGCAVVISHDRWFL
                     DRVATHILSFEGDSKVFWFEGNFSEYEEDKRARLGEAAAQPHRIKYRQLTRG"
BASE COUNT         1513 a         2818 c         2821 g         1508 t
ORIGIN      
        1 ctttctccct tcaacggcag cgacctcggc cagtcaacgg acgcgcgcat acaccgcttc
       61 atcgtcggct acgccgccgg cccgcgcgtg cagataacgc tcacgggctt cttcacgcgg
      121 agggcgaacg ggctgctcgg ccccttcacc gcgacgccgc ccggctcgct cgaccgcacc
      181 ctcacacggc tgcaactcga cacggtcttc cggttctgag gtgcggcgtt agggcagata
      241 accggccgct gttcgccggc ggcggtcgtg ctcgcgcacg gcggcggggc atcgtgctcg
      301 tcgccgcggc ggcggagaat gagtgagatt tcgtcgccct ctccggcgcc ttcccgcgcg
      361 ttcgccgttc ggccgccgtt gcaatttcga caagaaaatt ttctctattc gcccgataaa
      421 gtctcagcct tgacgctcgt cgcgggcgct tgttacactt tcgttagaat ctgcgaccga
      481 cgccggctgc gtctcaaaga accctcaaag ggtatccccg aaacccgacg cgacgcagcc
      541 atgttttttg taaacagcag gaggtgtgag gtgggtttca aagtcggaca gaaggtcgtg
      601 taccccaacc acggcatagg aaccatcgaa cagattgagt cgaaacagat cggagcgtca
      661 tcccttccct tctatacgct gcgcctcgcc gccacgaaca cagtcgtcct agtacccgta
      721 gccaacgctt cagaggtcgg cctgcgctcc cctataactt cgggcgagtg cgagttgctg
      781 ctcaagcacc tctctgacga cttccgcggc gcggcgtccg actggaaaga ccgcttcaag
      841 gagttcacgg agaagatgcg cacgggcgac atcttcgccg tcgcagaggt gctcaagaac
      901 ctgacgtacc tcagccactc caagccgctc tcgttccgcg agcagcgcat gctcgagcgc
      961 gcacgctacc tcgtcatctc cgaactagcc gccgtctgcc gccagcccga gtgcaacgtc
     1021 gagccccgcg tcgaggaagc gctcaggcgg gcctgcgcca agcacgagcg ccgccccgca
     1081 gccacgcgca tcgccgcggg cgcgaccgcc ggccactaac gaacgtccgc gaacaaaccg
     1141 actctcccca gagaggaaac tcccagcctc acggcgggcc tgtctctccg cgcgcccggc
     1201 gccgcacaaa ggcagagccg cgggcctcgt cgcccgcggc tctgccggct ctgccgcgaa
     1261 ggcttgcgcc cgtctcagtc gaggcacttc ctcttcagaa agattttctg cccgccttcc
     1321 gtgagcgaca tcccgtcggc cgtgacgacg cctgtgaact tgcgcgagtc ttccccgtcc
     1381 ggcagctcga actcgatctt acgctcctcg acctgcacgt tcgccttgac gagaacgggc
     1441 gggagcagaa cgccctgggc tatcgtcacc aaggcgtaga actggccgtc ggagtcagtc
     1501 aggtaaacct gcataccgcc gtagtcgccc ccggggcccg cggttatgtt gctgaagacg
     1561 ccctcggtgt ggaagctctt cgacttggag cctttctgcg ccgacgcggc cgacgcggcc
     1621 agcacgcaga gcgcgcagca caagagtatt gttgcgaata acctcatctg ttttctcctt
     1681 gaattaagcc gtctcagcgg cccttcgcgt aagcggcgtc ggccatctcc ctggccttcg
     1741 cgttcgcgtt cgggctccgg gcgtcaacct cgaaatcaat gtgctcgaag cccttcagcc
     1801 ccttgacgag cagcgactcg cccgtcttgt tctcgggccg ccacatctcc gaagggtcga
     1861 ggtcgggctt cgccttgtca acgcggagga tgacggcgaa gggcttcccg tcggcgaagc
     1921 gccactcgat cttcctcttc gagtcgtagt cgagcggctg ctcggccaga ctgatgcgct
     1981 cttcgctccc gcccgcgggc tgcacgccga cgtgcgagct ggccgcgctg aagtcaatcc
     2041 tcacctcgta gccgccgtag ccttcacacc tgaggggcgt gtcgtcgccc tgcggctcgc
     2101 cctccgacag cggcttgcac tgagtcttga ggtctgtgta ggagctcgag aacttcggcg
     2161 gcgcgggggc ggcgcccagg agcgctagcg cgcagaccgg cagcagaatt ttcattataa
     2221 acatatcgtc tctactcgac ttcggcccac gcgcggccgt ccttgtagtg gagcgtcact
     2281 ttggagattt cgagaaggtt aaggttctcc cacacgatga agttgccctc actgtcctcc
     2341 accctcaaat cccacatggc ggcctcctct tcgcggtcga acgtgatctt gacgctctgg
     2401 ccgctgggca gcgtgtcaac cccgaggatg tcctcctccc agtcgtcctt ttcgtgcggc
     2461 gagacgtaga gcttgttaat cactacgccc gtcgagttga cgagaatgaa gtcctgctct
     2521 cctctcggga tcgagggagc ggtcggcgtg cctgccaggg ccgcggcggc ggcgaagagc
     2581 agcacggcgg gcagggcgaa ggcggttaaa gttttcttca tgtgttcctc tgtatgagtt
     2641 ttgggttgaa gagtgggcga cggcgccgtg gcggcggtca ttaacgaagt gacgtgccag
     2701 ggagagttaa tggcccagtt gcggggccgg cgtcgtttgg aatctacgcc gagccggcgg
     2761 ggatagtaga gtaagacgcg ccatgaagtc aataacctct caaggccggg cgaactctca
     2821 ggccggcggt aggcgccccg cctccccgcc cgcctcgttc ggcaatctgc ttgcctcccg
     2881 ggggcggtta gggtataagg ccgtccgcct tcacggggag ccgcacgccc catcatcgag
     2941 ccacgccgaa aggaaaagcg aaaaatgtgg atggcaatcg ttaagttcgt cggtaaggag
     3001 acggccaagc agatactcaa agagttcacc ggccccggca tagaccaaat aaagacgctg
     3061 ctcctagggg aagaagagga tgtagtccag cagtacctgg agaaactgga caggcagatg
     3121 cgcgatgtcg tgctcagcct gaaggacatc gagctgcgcc aaatatttct cgactacaac
     3181 cgcgcggacg aggagctaga gcacctgttc gacctttacc acgggcagat tgacaagccg
     3241 gtgaaccacc gcgacaggca gaacacctgt agctacatcc tggatataaa caaaggggtg
     3301 tccgagcggg cgaggcggat gatcagcgcg ttccgccacg tcaacctccc ggcgtataag
     3361 actttctttc aggagtattc ggacaagctc gcgggcgagt accatgacgt gcacacctac
     3421 ctggacaaga tgggcgccgt gatgaaccac ctcaggatga acctgattga ggcgaaggtg
     3481 ctgcgcgagg cgtgttacag cgagatcgcc gataaggaga gggcgaccga ccttgcgctg
     3541 acctacgccg acgtgcggag ggtggagcgg cattacgaga aggttgtcgg cccggccgtg
     3601 gaactgaaga accagttgca ggggctcgcc gaggccggcg agcccgtccg cctgaagcat
     3661 ctcgccacgg gtaagtacct gaccacgttc gaggggggcg acccgctgag caggcacgcg
     3721 cccttcggcg acgaacggat gccgcaggtg tacctatacg ggatggctaa agggcaggtg
     3781 gagacttaca gggaagcgac ccccgtgcag gtgcacgacg acgttaaagt gatattcatc
     3841 aagaaggaag tgacggtaga gagcaaaagc caggagtgga gagtcgtcaa agtcgaaggc
     3901 gacgacaagc gggtcaggtt cgcgttccag ttgcgggggg gcgggaaggc tctggacggc
     3961 gtcagggacg ggcgggttta catcaacccc ctgcccgcag acaggaaaaa cgagcacatg
     4021 tggtgggagc ccgtcatgtc cagaggtaaa gacggtaagt tcgagccggg cgtcttcatc
     4081 ctgaggcaca agcctacggg gttagccctg gacggggacg gggcgagggt ttacgccgag
     4141 aacggccgca agccggacta cgacaacgct catatgaagt ggcgcttcga ccagaaaaac
     4201 gccatggagc ccggcgagtc cctggccccc ggcgaggagt tggtgtcgca caaccagcgc
     4261 tacgccctgc gttatcttgc gaacggcaac ctggagcttt tcgacaggga tcgtaagaga
     4321 gtcctgtggg aaacccacac cgccaataga ggcgcgtggc gatgcgtcat gcaaaaggat
     4381 gacgggcttt tcgccgtcta tgccaaagag aaggaggctg tgtggagcac caaccgccgg
     4441 ggcagcctct tcgccggcag caggctggtt ctgcgtgacg gcttcttcga ggtcattgac
     4501 cgcgaaggcg accccgtcta tgacaccagg tggctcctgc gccgggaaca ggagaacgcc
     4561 ctggggcccg acgaattcct cgcccccgga gagaggttgg tgtcacagaa ccggcggtac
     4621 gaactgcgtt atctgcacaa cgggaacctt gagctttacg acggcgtgga taataaggtc
     4681 tgctggcaca gcggcacagc gggcacgggc gcatggcggt gcgtcatgca gcggcgcaac
     4741 ggccaattcg tcgtttacgc caaagagcaa gcgcccgtgt gggccactaa gcccgacaac
     4801 agtaaattcg cagacagcac cttaaccctg ctcgacgacg ggacgttgcg actcggcacc
     4861 ccggagaaca acatatactg gaagaaggac gtgaagggcg acgagagttg gaagagctga
     4921 taagctcggc cgcgcgatgt gacgagccga agcagttttc tctccgccct actgccgggc
     4981 gcggagcctg cgccacgcct cgacgtcggc agcggccttc gggttcgact cgtcccagcg
     5041 gggcgcccgc tcggcgtccg cgaccgtgag cgcgcccaac gccacggcgc gcacgacgcg
     5101 ctccatgttg gcgtaatcaa tcttctccca gtggtcgccg ggcgcgtggt agtcggggaa
     5161 gcggaaggtg acgccgacgg tgtgcgcggg gacgcccgcg tcggcgagcg cctgattgtc
     5221 gctgcgcgag aagtaggggt cgctgttgcg cgggtgcttg tagaactcga agccgagtgg
     5281 cgcgcccgcc gccttgagcg tggcgccaag gtcggagtag tcgaagccgg tgacggtcgc
     5341 gcggccgagc tgcggcccct cgtcggcgtc gtccgtgcgc ccgacctgct ccatgtttat
     5401 ctgcgccacg gtcttttcga gcggcactaa ggggcggcgc acgtagtagc gcgagccgac
     5461 caggccgagc tcttcgccga agaaggcgat gaagaggatg ctgcgcttcg gcctcgtctt
     5521 gaggcgagcg agcgccgagg caatctctac gacgccgacg gtgcctgacc cgtcgtcgtt
     5581 cgcgccgttg ttgacgcagt cggcgccggc ctcgcagttg gcgacgaggc cgatgtgatc
     5641 gtagtgggcg gagacgacga cgaactcacc cttgagcgcg gcgtccgagc cgcggagaat
     5701 ccctgcgacg ttgcgcagct tgacgggcgt ctcggccggc gcggggacgc gcacgtcggc
     5761 ggtcgcgccc gcctcgcccg acggcagcga gtcgaagaag cgcgcggcct ccgccccgtg
     5821 aacgacgatg agcggcgcgg tgggctcgcc cccgatccca agctcgggga cgttgcgccc
     5881 ggcggcgccg ctcctctccg ggtctatgac gcgaggcgcg cggcccccgc gcgctcgctc
     5941 ggccctgcgg tcgaaggcca ggacgagcgg cacgcccagg ctacgcatgc gcgcgagaaa
     6001 gtcgttacgc tcgcgcagca cttgcagggc gcccgcaaag ttcccgcgcg ggacggcggg
     6061 gaactccgtc gcgacgactc ggcccgccgc ctgctcgcgc gtgagagcgg cggggacgtt
     6121 cgtcgggtcg agcttcagga gacgcgcgcc cgtcagggag agctcgccct ccggctccca
     6181 caggctgaag ccgccggtgc tgaagccgac gcctatctgc tcgggccgca ctgcgggcgc
     6241 aggcgcgggg cctcccgcga agctcaggcg gaaggccgcg gcgtcgcgcg cggacagtcg
     6301 ccagtcggcg gtctggaagt agccgtcgtc gcccgctggc tcgagccccg cgcgccggaa
     6361 ctgcgcggcg atgtactcgg ccgcgatgtc caggccgcgc gaaggtgccc tccgcccttc
     6421 gagcgcgtcc gacgccagaa aggagaggtg gccgcgcatg ctctcggcct ttacctcttc
     6481 gagcgccgcg cgccactccg gccgcacccc gcccgtctgc gcaagcggag ccgcggcgac
     6541 cagcaggcac acgcacagcg cgagcgccgc gcgcccggcc cctcgacgag acaacctccg
     6601 gttgcccatc cctattcgac cttcacgccg agccagaagg ccacgcgccc ttctatctgc
     6661 ttggcggcct ctttcgtgct cgggtagtac cacgcggcgt ccttgttcgt ctccccgttg
     6721 acgaccacgt cgtagtagct cgcctcgccc ttccacgggc aggtcgtgtg cgtgtggctc
     6781 tcgcggaagt gctcgcggtt aatcgagccc gccgggaagt agtggttacc ctcgacgacc
     6841 accgtgtcgt cactctccgc cagcacggcc cctttccagg tcgctttcat cgtccctcct
     6901 tagactcttc acccgcgcgt cagttgacgg tacttgatgc ggtggggctg cgcggcggct
     6961 tcgccgaggc gcgcgcgctt gtcctcctcg tactcggaga agttgccctc gaaccagaac
     7021 actttgctgt ccccctcgaa ggagagtatg tgcgtggcga cgcggtcgag gaaccagcgg
     7081 tcgtggctga tgacgacggc gcagccggcg aagttctcca gcgcctcttc cagagcgcgc
     7141 atcgtgttca cgtcgaggtc gttcgtgggc tcgtcgagga ggaggacgtt ggcgccttcc
     7201 ttcagcatct tcgcgaggtg gacgcggttg cgctcgccgc ccgagagcat gcctaccttc
     7261 ttctgctggt cggagccgga gaagttgaag cggccgacgt aggcgcgcga gttgacctca
     7321 cggctcccca gcttgacggt gtccgccccg cccgagattt cctcccagat gctcttgtcg
     7381 gggtcgagcg tgcgcgactg gtcaacgtag ccgagctgca cggtctcgcc gacgcggatc
     7441 gtcccggcgt ccggctgctc ctcccccgtt atcatgcgga agagggtggt cttgcccgcg
     7501 ccgttcggcc ctatgacgcc gacgatgccg ccgggcggga gcttaaaggt catgccctct
     7561 acgagcaggc ggtcgccgta agccttcgag accgagtcgg cctctatgac gaccgcgccg
     7621 aggcgcggcc ccggcgggat gtagatttcc agctcgcgcg cgcgctgctc ggtctgctgc
     7681 gccagcagcg cctcgtagga gttgatgcgc gccttgccct tcgcgcggcg cgccttcggc
     7741 gccatgcgta tccactccag ttcgcgctcg agggtcttct gccgctccga ctcctgcttc
     7801 tcctcgcggc gcaggcgctc ctgcttctgt tcgagccaag aagagtagtt ccccttccac
     7861 ggtatgccct gcccgcggtc gagctcgagg atccacccgg cgacgttgtc gaggaagtag
     7921 cggtcgtgcg tgacggcgat gacggtgcct gcgtactgct gcaagtgctg ctctaaccag
     7981 gcgacggact ctgcgtccag gtggttcgtc ggctcgtcga gcaggagtat gtcgggcttc
     8041 tgaaggagca ggcggcagag cgcgacgcgg cggcgctcgc cgcccgaaag cacacggacg
     8101 ggcgtgtcgc ccggcgggca gcgcagcgcg tccatcgcca tctcaagacg agaatccaag
     8161 tcccaggcgt cgagcgcgtc gagcttctcc tgcacctcgc cctggcgctc gagcagctta
     8221 ttcatctcgt cgtccggcat ctcctcgccg aagcgggcgt ttatctcgtc gaactctttg
     8281 aggagcgcga ccgtctccac gacggccacc tcaatcgtct cacgcactgt cttcgactcg
     8341 tcgaggcgcg gctcctgctc aaggtagccg accgtatagc cgggcgacag aaccgtctca
     8401 cccgtggagc ccttgtcctc gccggcgatg atgcgaagca gggaagattt ccccgagccg
     8461 ttcaggccga tgacgcctat cttcgccccg tagaagtagg agaggtaaat gtctttgagg
     8521 acggcgcgct tgtcgtagtg gcggctcacg ccgaccatcg agtagatgat tttgttgggc
     8581 tggtcgctca taacggtaga ttacacgaaa ggggcgggga aggcgtaagg ggcgcggccc
     8641 gcctaaggcg acggcggctt
//
LOCUS       DASPKR010000596         8255 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1125255, whole genome shotgun sequence.
ACCESSION   DASPKR010000596 DASPKR010000000
VERSION     DASPKR010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8255)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8255
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1125255"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..491)
                     /locus_tag="VD968_15990"
     CDS             complement(<1..491)
                     /locus_tag="VD968_15990"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE15944.1"
                     /translation="MRVDEWRRVEELLDAALEVGPAARRKLLDAISAPALRREVESLL
                     ACEERADGFLDAPALAFSAELLDGDGADARAGQVVGRYRILREIGQGGMGAVFLAERS
                     DGEFEHRVALKVVRRSLADTGLAKRFKQERQILASLNHENIARLLDGGVSEDGEPYLV
                     MEHV"
     gene            complement(604..3264)
                     /locus_tag="VD968_15995"
     CDS             complement(604..3264)
                     /locus_tag="VD968_15995"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE15945.1"
                     /translation="MRIEEWQRVEELLDAALELEPGGRRVFLEAITAPGLRREVESLL
                     ACEEGADGFLNAPALALSADFFDGDGAEDRAGQTVGHYRIIREIGRGGMGAVYLAERS
                     DGEFEQRVALKVVRRSLAGTDLARRFRRERQILASLNHENVARLLDGGLSEDGEPYLV
                     MEHVEGERIDEYCDANRLSTRERLGLFLKVCDAVAYAHQRLVVHRDIKPSNVLVTPGG
                     TPKLLDFGIAKLLDPGLAGEQTRTELRAFTPDYASPEQVSGESVTTVSDVYSLGRLLQ
                     TLLKGAGARTPQRPAGWRSDGGRGGRTAAANLPTRPEGAGAATSHGLHGAELRNIVLM
                     ATRDEPARRYQSVAQLAEDVRRHLDGLPVRAQPDSLTYRTGKFVRRNRAAVTAAALVV
                     VALLAGLGLALWQAGVARRERDRAERRFNDVRQLSNALLTDIAPKIENLQGATEARQS
                     VVTQSLKYLDSLAQETGDDPQLQSELATAYEKVGDIQGNPTNPNLGDLAGAIASYEKA
                     RKMRLELLEGSPDDFEQLRLLAANHQAMGNLHAQANELEESRKHTDTALSLYEKLAAE
                     RPGSPELRLALAQITYEAGDARKDISKYTEAIAFFRKALELLAPLLQDNPDNAQYLKL
                     AGACYSKLGNSLSWDGQQKEAEAETERAVRIYESLTASHPNDVSVSNGLWLTYWMASS
                     TYEEQNDALSHEYALKALGVIQAVAQRDPANSEARQDVARTLSTLGQTSSNTGRLAEA
                     VSYAERAVSELTRLFADDPRSGGTKSSIAAALMRLAEARAKQKDFAGALAELERAERI
                     NDELLRADATDTYSLRKQALVWDFRAEIHLEWAKTVAGARRRAHERAARDSYARAVEI
                     LEQLDAQKSLPESDRKWIERLRAYLKEHNR"
     gene            complement(3314..3889)
                     /locus_tag="VD968_16000"
     CDS             complement(3314..3889)
                     /locus_tag="VD968_16000"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE15946.1"
                     /translation="MSEEPQHEVTRILEDWSGGDRGAAERLMPYVYDEMRRLARSFLA
                     RERVGHTLQPTALVHEAYVRLVDQTRVNWQSRAHFYGIASSMMRRVLIDHARAHATEK
                     RGGGAVRLSVEDVQVPLEERAQSLVALDEALERLKALDERKCMVVEMRFFGGLEDKEI
                     AEVLGVTTRTVLRDWKKARLWLYRELAQNPS"
     gene            4163..7174
                     /locus_tag="VD968_16005"
     CDS             4163..7174
                     /locus_tag="VD968_16005"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15947.1"
                     /translation="MNPTRTKRNNLLAALTAASLLLALLWAGGSSAQGSFVGDYDTAF
                     SPPDGYYVDPEVVDATEHDGAVQTLFFTGGLLPDGSVIAGGRHVNRNRSNGDFYLRKF
                     TPSGAVDTTFGTGGFVRTTFHTRYDGVPGNDLPQVLKVQPDGKILFAGYCIMLEPNAS
                     TAQFGADACVMRYNPDGTLDPTFGGGTIVYTSQGNTYDHSTTLDPGKVIIQSGAISSG
                     QSFGTNGTVYDIEVQPDGKILLAGETKNYASFWGTQTIIGFVARLNPDGSLDGTFGSG
                     GIARWAAPEGPAAGCFPSRRFFGLRLQADGRILAVGHGEITRSAAEPCAYGERFAVTR
                     WTAAGVLETVSHIDDLANVDVFFTERAVSAHFARDGKLLVSGSARNRSGSPAGRQKPT
                     LVRMNVADLSLDTSFGSGGVAQYDVAWGSYVGSTFRAQAIQPDGKILGTDNAFLPGNY
                     VRLNPDGTGDDTFGNQDIDSVPGGLGRLRVFVMNYNGVNSQLEAGQLLLRPNGKINLV
                     AHSAAHSGLAILRAVVSQNTAIPESADLELTKSASPDPAFLDRVLTYTINVTNHGPLD
                     AAAVKVVDNLPSSGITFLSATPSQGTCTRSGATLTCQLGDLWNGASASIVVKIRPRVT
                     GTLTNTATASSQTPDAVSTNNSVTIQTPVVVSTDLSITKTASKNPALVNQIFAYNLQV
                     TNLGPAAANNVTAVDQLPSGISFVSATPSQGTCAHASGTVTCHFGALAVGANATAVLK
                     VKAREAGALSNTATVSATEADHDTSNNSATVQTSAILSADLSVKKRDSADPVLLGQQF
                     TYTLTVANAGFVAATGVIVTDTLPGSMAFVSASASQGSITSATPAGSSGTVVASLGNM
                     AVGATATVAITVEATQPGSFTNAAAVAGDQSDHDTTNNTHKQTTTVVTLSKLLLSASS
                     VRGGCLPHPTGTVYLTGPAPAGGVTVSLSSTIPAATTPASVLIPAGATKSAAFTVTTS
                     SVGAAQSGQIKATLGSKTVGRGLSVMPGACP"
     gene            7368..>8255
                     /locus_tag="VD968_16010"
     CDS             7368..>8255
                     /locus_tag="VD968_16010"
                     /inference="COORDINATES: protein motif:HMM:NF018449.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SBBP repeat-containing protein"
                     /protein_id="HYE15948.1"
                     /translation="MRLPRKRLFTLALSSVAGLLLVTPLMSSRRGHVPSPPAHDARAR
                     EAYGRIPLSFEANRGQTEASVDFLARGAGYALFLKPAEAVFRLRRDAAQESVLRMRIV
                     GADSTAAASAEAELEGRAHYLIGDDPSEWHTDVPTFARVRYAEVYPGVDVVYYGNQRQ
                     LEYDFRVAPGADAGAVSLEFDGADKIEVAAGGDLLLTLGEAVVRQPKPFVYQEVAGAR
                     REVEGAYAVGADGRVGFRVGEYDPSLPLVIDPVIVYSTYLGGSGTDLARAIAVDPSGN
                     AVITGYTQSLNFPTANAFQA"
BASE COUNT         1272 a         2895 c         2715 g         1373 t
ORIGIN      
        1 acgtgctcca tgacgaggta aggctcgccg tcctctgaga cgccgccgtc taagagccgc
       61 gcgatattct cgtggttgag cgaggcgaga atctgccgct cttgcttgaa gcgcttggcg
      121 agccccgtgt cggcgagact ccggcggacg acctttagcg cgaccctgtg ctcgaactcc
      181 ccgtccgagc gctcggcgag gaagactgcg cccataccgc cctgccctat ctcacgtagt
      241 atgcggtagc gcccgacgac ctgtccggcg cgcgcgtccg cgccgtcgcc gtcaagcagc
      301 tcggcggaga aggcgagcgc gggcgcgtcg aggaagccgt cggcgcgctc ctcgcaggcg
      361 agcagcgact ctacctcgcg ccgcagcgcg ggggcgctta tggcgtcgag gagttttcgg
      421 cgcgccgccg gcccgacctc gagcgcggcg tcgagcagtt cttcgactct tcgccactcg
      481 tcaactctca tcaccgctcg caaaggtgtg ccccccgtga agggggccgc cgcgacgttg
      541 gggtttcggc cgcccgcacg gggcggcaaa gctcccgggc gtgccgcggg agcccggggc
      601 cgtttagcgg ttgtgctcct ttaggtacgc tcggagcctt tcgatccact tgcggtccga
      661 ttcggggagc gatttttgcg cgtcgagctg ttcgagaatc tccacggccc gcgcgtaact
      721 gtcgcgcgcc gctcgctcgt gcgcccggcg tctcgccccc gccacggtct tagcccattc
      781 gaggtgaatc tccgccctga aatcccaaac cagggcctgt ttgcggagcg agtatgtgtc
      841 ggtcgcgtcc gcccgcagga gctcgtcgtt gattcgctcg gcgcgctcga gctcggcgag
      901 cgcgcccgcg aaatctttct gtttggcccg cgcctccgcc agccgcatca gcgccgcggc
      961 gatactgctt ttcgtgccgc cgctccgggg gtcgtcggcg aacaggcggg tcagttcgga
     1021 gacggccctc tccgcatacg agacggcttc ggcgagcctc cccgtgttcg acgaagtctg
     1081 cccgagcgtt gagagggtcc gcgccacgtc ctggcgcgct tccgagttag cggggtctct
     1141 ctgggcgacg gcttgaatca cccccagggc cttgagcgcg tactcgtgcg acagggcgtc
     1201 gttctgctct tcgtaggtgc tgctcgccat ccaatatgtc agccacaggc cgttgctgac
     1261 actaacgtcg ttcgggtggc tggcggtgag cgactcgtaa atccggacgg ccctttccgt
     1321 ctccgcctcg gcctccttct gctgcccgtc ccaggagagc gagttgccca gcttcgaata
     1381 acaggcgccg gcgagcttca ggtattgggc gttgtccgga ttgtcctgta gcaggggggc
     1441 gagcagctca agagctttgc gaaaaaaggc aatcgcctcg gtgtattttg agatgtcctt
     1501 ccgcgcgtcc ccggcttcat aggtgatttg ggccagggcc aggcgcagtt cgggggagcc
     1561 gggcctctcg gccgccagct tctcgtaaag gcttaaagcc gtgtcggtat gtttgcgtga
     1621 ttcttcgagc tcgttggcct gcgcgtgaag attacccatc gcctggtggt tggccgccag
     1681 aagccggagc tgctcgaaat catccgggct gccttcgagc agctcgagcc gcatcttccg
     1741 ggccttttcg tagctcgcga tggcgccggc cagatcgccc aggttcgggt tcgtggggtt
     1801 gccctggatg tcgccgacct tctcgtaggc ggtcgccagc tcgctttgca gctgcgggtc
     1861 gtcgccggtc tcctgcgcca gactgtcgag gtacttgagc gactgagtga cgaccgactg
     1921 gcgggcctcg gtcgcgccct gaaggttctc gattttcggc gcgatgtcgg tcagcagcgc
     1981 gttcgagagt tggcgcacgt cgttgaaacg ccgctcggcg cggtcgcgct ctcggcgcgc
     2041 gacgccggcc tgccacagcg cgaggccgag gccggccagg agcgccacga cgacgagcgc
     2101 ggcggccgtc accgcggcgc ggttgcgccg gacgaatttg ccggtgcggt aggtgagcga
     2161 gtcgggctgc gcgcgcacgg ggaggccgtc gaggtggcgg cgcacgtcct cggccagctg
     2221 agcgacggac tggtagcggc gcgccggctc gtcgcgcgtc gccatcagga cgatgttgcg
     2281 cagctccgcg ccgtggagcc cgtgcgaagt ggccgcgccg gcgccctccg gccgcgtcgg
     2341 caggttcgcc gcggccgtcc gccctccgcg gccgccgtcg gagcgccagc ccgcggggcg
     2401 ctgcggcgtt cgcgcgcccg cgcccttcag gagggtttgg agcagacggc cgagcgagta
     2461 aacgtccgag accgtggtaa ctgattcgcc gctgacctgc tccggcgagg cgtagtcggg
     2521 cgtgaaggcg cgcagctccg tgcgcgtctg ctcgcccgcc agcccggggt cgaggagttt
     2581 ggctatgccg aagtctaaaa gtttcggcgt gccgcccggg gtgacgagga cgttcgaggg
     2641 ctttatgtcg cggtgcacga cgaggcgctg gtgcgcgtac gcgaccgcgt cgcagacctt
     2701 caggaagagg ccgaggcgct cgcgcgtcga gagtcggttc gcgtcgcagt actcgtctat
     2761 gcgctcgccc tcgacgtgct ccatcacgag gtagggctcc ccgtcctcgc ttaagccgcc
     2821 gtctaagagg cgcgcgacgt tctcgtggtt gagcgaggcc agtatctgcc gctcgcgccg
     2881 gaagcggcgg gcgaggtcgg tgcccgcgag gctgcggcgc acgaccttga gggcgacgcg
     2941 ctgctcgaac tccccgtcgc tgcgctcggc caggtagacc gcccccatcc cgccgcgccc
     3001 tatctcgcgg atgatgcggt agtgaccgac ggtctgcccg gcgcggtctt ccgccccgtc
     3061 cccgtcaaag aagtccgccg agagggccag tgccggcgca ttgaggaacc cgtcggcccc
     3121 ttcctcgcag gcgaggagcg actcgacctc gcgccgcagc cccggcgcgg tgatggcctc
     3181 gaggaacacc cgccgcccgc ccggctcaag ctccagcgcg gcgtcgagca gttcttcgac
     3241 tctttgccac tcctcaattc tcatcaccag acgtaaacgc gggccggcgg gccggaaact
     3301 gacaggggtt agctcaggag gggttctgcg ccagctcgcg gtagagccag aggcgcgcct
     3361 tcttccagtc gcggagcacc gtgcgggtgg tgacgccgag cacttctgct atctctttgt
     3421 cctccaggcc cccgaagaac cgcatctcca cgaccatgca cttgcgctcg tccagggcct
     3481 tgagcctttc gagggcctcg tccagcgcga cgaggctctg ggcgcgctct tcgagcggca
     3541 cctgcacgtc ttcgaccgag agacggacgg cgccaccgcc gcgcttctcg gtggcgtggg
     3601 cgcgcgcgtg gtctatcagg acgcgccgca tcatgctcga agctatgccg tagaagtgcg
     3661 cgcggctctg ccagttgacc cgagtctggt cgacgaggcg gacgtaggct tcgtggacga
     3721 gggcggtggg ctgcagggtg tggccgacgc gctccctcgc gaggaaagag cgcgcgaggc
     3781 ggcgcatctc gtcatagacg tagggcatca ggcgctccgc cgcgccgcgg tcgccgccgc
     3841 tccaatcctc gagaatccgc gtgacttcgt gttgaggctc ttcgctcatc ggacgccccc
     3901 tcgcaggccg ccgcggattc taccgcgaaa caaacgcccc ggcgaaaaaa aatcgccccc
     3961 cgtgtcacgt taggcggccc cgcgccgcgt gttcgagcgg agacgaaagc cgcaaggtct
     4021 tttgaaaagt cggaaggtct tttgagggcc gggggggcgc cgcccgaggc gcccggcccg
     4081 tcacccgcaa ctgctaacgc gcggtcagga agctagccac gccgccgccc gctgccccat
     4141 cccgttacaa ggagatttag acatgaaccc caccaggact aagagaaata acttgctcgc
     4201 cgccctgacg gccgcctcgc tgctgctggc cctcctgtgg gctggcggct cgtccgcgca
     4261 gggctctttc gtcggcgact acgacacggc cttctccccg cccgacggct actacgttga
     4321 cccggaggtg gttgacgcca cggagcacga cggcgctgtc cagacgttat tcttcacggg
     4381 cggtctgctg ccggacggct cagtcatcgc cggcgggcgg cacgttaaca ggaaccgttc
     4441 gaacggagat ttttatctga ggaaattcac gccgtctggc gcggttgaca ccaccttcgg
     4501 gacgggcggg ttcgtccgca ccaccttcca caccaggtac gacggcgtcc ccggtaacga
     4561 cctgccgcag gtgctgaaag ttcagccgga cggcaaaata ctcttcgccg ggtactgcat
     4621 catgctcgag ccgaacgctt cgaccgcaca gttcggggcc gacgcctgcg tcatgcgcta
     4681 caacccggac ggcacgctcg acccgacttt cggcggcggg acaatcgttt acacttccca
     4741 gggcaacaca tacgaccaca gcacaacgct cgaccccggg aaagtcataa tccagtccgg
     4801 ggccatcagc agcgggcagt cgttcggcac taacgggacg gtttacgaca tagaggttca
     4861 gcccgacggc aaaatcctgc tcgcgggcga aaccaagaat tacgccagct tctgggggac
     4921 gcagacaatc atcgggttcg tcgcgcgcct gaacccggac ggctcgctcg acggcacttt
     4981 cggctcgggc ggcatcgccc gttgggccgc gccggaaggc cccgccgccg gttgcttccc
     5041 gtcgaggcgt ttcttcggcc tgcgcctgca agcggacggg cgcatcctcg ccgtcgggca
     5101 cggcgagata accaggtcgg ccgccgagcc ctgcgcctac ggcgaacgtt tcgccgtgac
     5161 gcgctggacg gccgcggggg tgcttgagac cgtgagccac atcgacgacc tcgccaacgt
     5221 cgacgttttc ttcacggagc gcgccgtctc ggcccacttc gcacgagacg gcaaactcct
     5281 cgtctccggc tcggcgcgca accggagcgg gagcccggcc ggccgccaga agccgacgct
     5341 cgtccgcatg aacgtcgccg acctttcgct cgacacctct ttcggcagcg gcggcgtcgc
     5401 acagtacgac gtggcgtggg gcagctatgt cggctcgact ttccgggccc aggccattca
     5461 gccggacggc aaaatcctcg gcacggacaa cgcgttcctg cccggcaact acgtgcgcct
     5521 caacccggac ggcacgggcg acgatacttt cggcaaccag gacatagaca gcgtgcccgg
     5581 cggcctcggc aggctgaggg tcttcgtcat gaactacaac ggcgtcaaca gccagctcga
     5641 agccggacag ctcctcctgc gcccgaacgg caaaatcaac ctcgtcgccc acagcgcggc
     5701 gcacagcggc ctcgcgatac tgcgcgccgt cgtctcgcag aacacggcca tacccgagtc
     5761 ggcggatttg gagctgacca agtcagcctc gcccgacccg gccttccttg accgagtgct
     5821 cacctacacc ataaatgtca ccaaccacgg cccgctcgac gccgcggccg tcaaggtcgt
     5881 tgacaacctg ccgtcctccg gcatcacttt cctctccgcc acgccgtcgc aagggacatg
     5941 cacgcgctct ggcgcgacct tgacctgcca actcggcgac ctctggaacg gcgcctcggc
     6001 ctccatcgtc gtcaagataa ggccgcgcgt gacggggacg ctcaccaaca cggcgaccgc
     6061 ttcgagccag acgcccgacg ccgtcagcac gaacaactcc gtcaccatcc agacgcccgt
     6121 cgtcgtctcc acagaccttt ccataaccaa gactgcctcg aagaacccgg cgctcgtcaa
     6181 ccagatattc gcctacaacc tccaggtcac gaacctcggc ccggccgcgg ctaacaacgt
     6241 gacggcggtt gaccaactgc cctcgggcat cagcttcgtc tcggccacgc cgtcgcaggg
     6301 gacttgcgcg cacgcctccg gcacggtcac gtgccacttt ggcgccctcg ccgtcggcgc
     6361 caacgccacg gccgtcctca aggtgaaggc gcgggaggcg ggcgcgctct cgaacacggc
     6421 gacggtctcg gccacggagg ccgaccacga cacgtcgaac aactcggcca ccgtgcagac
     6481 ctcggcgatt ctgagcgccg acctgtctgt gaagaagagg gactcggccg accccgtgct
     6541 cctgggccag cagttcacct acacgctgac ggtcgccaac gccgggttcg tggccgcgac
     6601 cggcgtcatc gtgactgaca ctctgcccgg ctcgatggcc ttcgtctctg cctccgcctc
     6661 gcaagggagc atcacgtcgg cgacgcccgc ggggtcgagc gggacggtcg tggcctcgct
     6721 cggcaacatg gccgtgggcg ccacggccac ggtggcgata acggtcgagg ctacgcagcc
     6781 cggctccttc accaacgcgg ccgcggtcgc gggcgaccaa agcgaccacg acacgacgaa
     6841 caacacccac aagcagacga cgacggtcgt gactctctcg aagctgctgc tctccgcctc
     6901 ttcggtgagg ggcgggtgcc tgccgcaccc gaccggcacg gtgtatctga cgggccccgc
     6961 gcccgcgggg ggcgtgacgg tgagcttgtc gagcacgata cctgccgcga ccacaccggc
     7021 gagcgtcctt atccctgcgg gcgccaccaa gagcgcggcc ttcacggtga caacgtcgag
     7081 cgtgggcgcg gcgcagtccg gccagataaa ggcgacgctg ggtagcaaga ccgtcggcag
     7141 gggcctctcc gtcatgccgg gggcctgtcc ttgagcgaag gcttaaccgc ggcgcgcgct
     7201 gactagagag cgcaggcccg gccgccccgc gtggggcggc cgggcctgcg ctttcggcga
     7261 gaaaaccgtt tacccggcgc ccgtctccgc gtataatccg cgccctaccc gctcgccgcc
     7321 ggcgcgaagc acaagtaatc ctacccgttg acaagaaaga ggtcttaatg agactgcctc
     7381 ggaaacgtct gttcactctc gccctgtcgt ccgtcgcagg gctactgctc gtcacgcctt
     7441 tgatgtcgag ccgccgcggc cacgtgcctt cgcctccggc gcatgacgcg cgcgcgcgcg
     7501 aagcctacgg gcgaatcccc ctgagcttcg aagccaaccg cggtcagacc gaggcttcgg
     7561 ttgatttcct cgcgcgcggc gccggctacg cgctcttcct gaagcctgcg gaggccgtct
     7621 tccggctgcg ccgcgacgcc gcgcaggaga gcgtgctgcg gatgcgaatt gtcggcgccg
     7681 actccacggc cgccgcctcg gccgaagccg agctggaggg ccgggcccac tacctcatcg
     7741 gcgacgaccc ttccgagtgg cacaccgacg tgccgacctt cgcgcgcgtg cgctacgcgg
     7801 aagtctatcc gggcgtggac gtggtctatt acggcaacca gcggcagctc gagtacgact
     7861 tccgcgtggc gccgggcgcc gacgccgggg ccgtgtctct ggagttcgac ggcgcggaca
     7921 agatcgaggt cgccgctggc ggcgaccttc tgctgacgct gggcgaggcc gtcgtgaggc
     7981 agccgaagcc cttcgtgtat caggaagtgg cgggcgcgcg gcgcgaagtc gagggcgctt
     8041 acgccgtcgg cgccgacggg cgcgtgggct tccgcgtggg cgagtatgac ccgtcgctgc
     8101 cgctcgtcat agaccctgtc atcgtctact cgacctacct cggcggcagc ggcaccgatc
     8161 tcgccagagc catcgctgtt gacccgtccg gcaacgccgt catcacgggc tatacccagt
     8221 cgttgaattt tccgacggcc aacgcctttc aggcg
//
LOCUS       DASPKR010000597         2289 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1125287, whole genome shotgun sequence.
ACCESSION   DASPKR010000597 DASPKR010000000
VERSION     DASPKR010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2289)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1125287"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1651)
                     /locus_tag="VD968_16015"
     CDS             complement(<1..1651)
                     /locus_tag="VD968_16015"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HYE15949.1"
                     /translation="MGRKFYACAVFTILTLVALSSATWQGAGAQGGAQLPTLTLTSPV
                     GGFTLPVGVIHAGDRSGRLFVIEQNGLISIVKDGARLSTPFLDITSRTSKGGERGLLG
                     LAFPPDYATKGYFYVNYTNTAGDTVIARYSRNATNPDLADFSSEQVVALIPQPFSNHN
                     GGHMAFGPRDGYLYVATGDGGSGGDPGNRAQNPAQLLGKLLRIDVETGRPYTYTVPQS
                     NPFVGAEGYRPEIWALGLRNPWRFSFDRVTGDLFVGDVGQSEWEEIDFQPGDSEGGEN
                     YGWRIMEGQQCFNPVPCDQTGLTLPVWSYSHSGGDCSVTGGFVYRGTTYPRMQGLYFY
                     ADYCTARFWALRRVDGAWQSTELLNAPGNISSFGEDEAGELYVAVHNTGQILRLADAG
                     PALPPSATPTPATVKFTQAAYNVNEEAHSATVTLRRDGDTSVELRVDYATSDGTASEK
                     SDYTTARGTVRFAPGEVEKSFTVVLTDDERSEPAQESVNLTLSNLRSSGSLAAPTTVQ
                     LLISDADTQTSPPNPIDDSEFFVRQHYADFLNRVPDEGGLAF"
     gene            complement(1687..>2289)
                     /locus_tag="VD968_16020"
     CDS             complement(1687..>2289)
                     /locus_tag="VD968_16020"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF014563.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobN"
                     /protein_id="HYE15950.1"
                     /translation="SVEEYRRLCPFVSEIEKEWGAAPGKINTFGRELLIQGVRLGNAL
                     VAVQPTFGYEGDPMRLLMSRGGAPHHGFAALYTYLEKVFGADAVVHVGTHGSLEFMPG
                     KQVGLSAECWPDRLIGELPHVYIYSVNNPSEGSIARRRSYAELVSYLTPPVEDAGLYR
                     ELASLKEALLAYRQTADAREREQLFAAIQEKAEALHFSPR"
BASE COUNT          356 a          714 c          811 g          408 t
ORIGIN      
        1 agaaggcgag gccgccttcg tcggggacgc ggttgaggaa atccgcgtag tgctggcgga
       61 cgaagaactc gctgtcgtca atcgggttgg gcggcgaggt ctgcgtgtcg gcgtcggata
      121 tgaggagctg cacggtggtc ggcgcggcga gcgagccgct gctgcgcagg ttgctgagcg
      181 tgaggttcac gctctcctga gcgggctcgc tgcgctcgtc gtccgtgagc acgacagtga
      241 agctcttctc cacctcgccc ggcgcgaagc gcaccgtgcc gcgcgccgtc gtgtagtcgc
      301 tcttctcgga ggccgtgccg tcgctcgtcg cgtagtcaac gcgaagctcg acggatgtgt
      361 cgccgtcgcg ccgcagggtg acggtcgcgg agtgggcctc ctcgttcacg ttgtatgcgg
      421 cctgcgtaaa cttgacggtg gcgggcgtag gcgtggcgga gggcgggagc gccggtcccg
      481 cgtccgcgag gcggagaatc tgccccgtgt tgtgaacggc gacgtaaagc tcgccggcct
      541 cgtcctcgcc gaaggaggag atgttgccgg gcgcgttaag aagctcggtg ctctgccacg
      601 cgccgtcaac gcgccgcaag gcccagaagc gcgccgtgca gtagtcggcg tagaagtaga
      661 gcccctgcat gcgcgggtag gtcgtacccc ggtagacgaa gccgcccgtc accgagcagt
      721 cgccgcccga atggctgtag ctccacacgg gcagcgtcag ccccgtctgg tcgcacggga
      781 cggggttgaa gcactgctgc ccctccatga tccgccagcc gtagttctcg ccgccctcgc
      841 tgtcgcccgg ctggaagtct atctcctccc actcgctctg ccccacgtcg cccacgaaga
      901 ggtcgccagt cacgcggtcg aaggagaagc gccaggggtt tcgtaagccg agcgcccaga
      961 tttcgggccg gtagccctcg gcgccgacga aggggttcga ctgggggact gtgtaggtgt
     1021 aggggcggcc tgtctcaacg tctattcgca ggagtttgcc gagcagctgg gcggggttct
     1081 gcgcgcggtt gccggggtcg ccgccgctgc cgccgtcgcc cgtcgccacg tagaggtagc
     1141 cgtcgcgcgg gccgaaggcc atgtggccgc cgttgtggtt cgagaacggc tgtgggatga
     1201 gggcgacgac ctgctcgctt gagaagtcgg cgaggtcggg gttcgtggcg ttgcggctgt
     1261 agcgggctat gacggtgtcg cccgccgtgt tcgtgtaatt gacgtagaaa tagcctttgg
     1321 tggcgtagtc gggcgggaag gcgaggccga gcaggccgcg ctcgccgccc ttgctggtgc
     1381 gcgaggtgat gtcgaggaac ggcgtcgaga gtcgcgcgcc gtccttgacg atgctgatta
     1441 ggccgttctg ctcgatgacg aagaggcggc cgcttcggtc gcccgcgtga atgacgccga
     1501 ctggcagcgt gaagccgccg actggcgaag tgagcgtgag cgtagggagt tgcgcgccgc
     1561 cctgcgcccc cgcgccctgc cacgtcgccg acgagagcgc cacaagagtc agaattgtaa
     1621 agaccgcaca ggcgtaaaac ttcctgccca cttcttccct ccctttttcg acgacaacag
     1681 gtatttctac cgagggctga agtgcagcgc ctcggccttc tcttgaatcg ccgcgaagag
     1741 ttgctcgcgc tcgcgagcgt cggcggtctg cctgtatgcg agcagcgcct ctttcaatga
     1801 ggccagctcg cggtagaggc ccgcgtcctc gaccggggga gtaaggtacg agaccagctc
     1861 ggcgtaagac ctgcgccggg ctatggagcc ttccgaaggg ttgttgacgc tgtaaatata
     1921 gacgtgcggg agctcaccta tcaaacggtc gggccagcac tcggccgaga gcccgacctg
     1981 cttgcccggc atgaactcca gcgagccgtg cgtgccgacg tggacgacgg cgtcggcgcc
     2041 gaagactttt tcgaggtaag tgtagagggc cgcgaacccg tggtgtgggg cgcccccgcg
     2101 cgacatgagc agccgcatcg ggtcgccctc gtagccgaag gttggctgca cggcgaccag
     2161 cgcgttcccc aggcgcacgc cctgaatcag aagctctctg ccgaacgtgt ttatcttacc
     2221 gggcgccgcg ccccactcct tctcaatctc cgaaacgaag gggcagagcc ttctgtactc
     2281 ttcgacgct
//
LOCUS       DASPKR010000598         3069 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_872549, whole genome shotgun sequence.
ACCESSION   DASPKR010000598 DASPKR010000000
VERSION     DASPKR010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3069)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3069
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_872549"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..657
                     /locus_tag="VD968_16025"
     CDS             <1..657
                     /locus_tag="VD968_16025"
                     /inference="COORDINATES: protein motif:HMM:NF026968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HYE15951.1"
                     /translation="EDLERAVEACRQGGEWPLVQAYARGRGKGVFALCDDGRVVAKFA
                     HERLRDTRPTGSGSSLRRSVEPEARLVRPAERLLADMRWHGPAMVEFKDEGSGEPTLM
                     EVNGRFWGSLQLGVDAGVNFPVLWAAILRGEKVAHEGGYAAGVTLRWLWGDFKRFLFI
                     VRGRPEGYAGDYPTRAEGLRELFGPQPAGTRLEAYRAGDPWPAVGEWVQGARDLLARL
                     "
     gene            686..1804
                     /locus_tag="VD968_16030"
     CDS             686..1804
                     /locus_tag="VD968_16030"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE15952.1"
                     /translation="MSNPIRVLMVTSEWPAPGLSRTAHFIKRQADFLRAAGVDVEVFP
                     FKGAKNPLNYLKAWARFRRKLLRGRYDLVHAQFGQSGLLALPKRLPMVVTFRGSDLLG
                     TVSDRNGRHIWASRIHQRLCRLVARRADAAVVVSAHMKAYLPAGVEAEVIPSGLDFDF
                     FREMPRDEARRRMGLPADERLVLFVGRPTQARKRMWLAERAVEALNRELPARLVVAWG
                     VPHADVPVYMSACDALVFTSMQEGSPNVVKEALACNLPVVSVKVGDVEERLRGVEGCE
                     VCEDERPETIAAALARALRRGGRSAGREAVRGLDERIITDRVIGIYRKILAGRRGLAV
                     ESLVNRGSQAEEGCGELPLAARAAVSSGDVRVSAVRQN"
     gene            1972..2760
                     /locus_tag="VD968_16035"
     CDS             1972..2760
                     /locus_tag="VD968_16035"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:NF014453.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HYE15953.1"
                     /translation="MQGAEAPPAAAPAAQTAFPWDAIKIEGDGDGAAALSLDVLGAPA
                     ARVLRKGRRYADQSGRRRGLYAFCKRALDVAVAALLLVAALPLLAAVALLVKATSSGP
                     VFFRHRRLGLGGAEFDCLKFRTMVVGADEQLRRNEFLRRQFEQSYKLKHDPRITPVGA
                     FLRRTSLDELPQLLHVLRGEMSLVGPRPIIRPELEKYSIYGAKLLTVKPGLSGLWQVC
                     GRSDTTYPQRVMMDMHYIDHRSLSLDLRLLLRTVGAVIRKSGAC"
     gene            2844..>3069
                     /locus_tag="VD968_16040"
     CDS             2844..>3069
                     /locus_tag="VD968_16040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15954.1"
                     /translation="MRILFVTQIYLPEMGALPNRLYPLARRLAESGHEVFVATGMPNY
                     PKFDKAGKFHGYRGSAKDITVEYERKLMDSQ"
BASE COUNT          475 a         1022 c         1094 g          478 t
ORIGIN      
        1 gaggatttgg agcgcgccgt cgaagcgtgc aggcagggcg gcgaatggcc tctcgtgcag
       61 gcttacgcgc gcggccgcgg caagggcgtc ttcgcattgt gcgacgacgg gcgcgtggtc
      121 gcgaagttcg cgcacgaacg cctgcgcgac actcggccga cggggtcggg cagcagcctc
      181 cgccgctcgg tcgagcccga agcgcggctc gtcaggccgg ccgagaggct gctcgcagat
      241 atgcgctggc acggccccgc gatggtcgag ttcaaggacg agggctcggg cgagcctacg
      301 ctgatggagg tcaacggccg cttctggggc tcgctccagc taggcgttga cgcgggcgtg
      361 aacttccccg tgctctgggc ggcgatactc cggggagaga aggtcgcgca cgagggcggc
      421 tacgctgccg gcgtcacgct gcgctggctg tggggcgact tcaaacgctt cctcttcatc
      481 gtgcgcggca ggcccgaagg ctacgcgggc gactacccga cgcgtgccga agggctgcgc
      541 gaactgttcg ggccgcagcc ggcggggacg cggctcgaag cataccgcgc gggcgacccc
      601 tggcccgccg tcggcgagtg ggttcagggg gccagagacc ttttggcgcg cctctgagcc
      661 gcgcccttca acgttggggt ggcagatgag taatccgatc cgagtcttga tggtcacgag
      721 cgaatggccc gcgccgggcc tgtcgcgcac cgcccacttc atcaagcggc aggcggattt
      781 cctgcgcgcc gcgggcgtgg acgtagaggt gttccccttc aagggcgcga agaaccctct
      841 gaactatctg aaggcgtggg cgcgcttccg tcggaagctc ctgcgcgggc gctacgacct
      901 cgtgcacgcg cagttcgggc agagcgggct gctcgccctg ccgaagcgcc tgcccatggt
      961 cgtcaccttc cgcggcagcg acctgctcgg caccgtcagc gaccgcaacg gccgccacat
     1021 ctgggccagc cgcatccacc agcgcctgtg ccggctggtg gcgaggcgcg cggacgcggc
     1081 cgtcgtcgtc tcggcgcaca tgaaggctta cctgcccgcg ggggtcgagg ccgaagtcat
     1141 cccctcgggg ctcgacttcg acttcttccg cgagatgccg cgcgacgagg cgcgccgccg
     1201 catgggcctt cccgccgacg aaaggctcgt gctgttcgtc gggaggccga cgcaggcgcg
     1261 caagcgcatg tggctggccg agcgcgccgt cgaggcgctc aaccgggagc ttccggcgcg
     1321 gctcgtcgtc gcgtggggcg tgccgcacgc ggacgtgcct gtttacatga gcgcctgcga
     1381 cgcgctcgtc ttcacctcga tgcaggaggg atcgccgaac gttgtgaagg aggcgttggc
     1441 ctgcaacctg ccggtcgtct ccgtcaaagt cggcgacgtg gaggagcgcc tgcgcggcgt
     1501 cgagggttgc gaggtgtgcg aggacgagcg gccggagacg attgcggcgg cgctcgcgcg
     1561 cgcgctgcgc aggggcggcc gcagcgccgg gcgcgaggcc gtgcgcggcc tcgacgaaag
     1621 aatcatcacc gacagggtga taggcatcta ccgaaaaatt ctggcgggcc gtcgcggtct
     1681 cgccgttgag agtctggtga acagggggtc gcaggcggag gaaggctgtg gcgagcttcc
     1741 gctcgcggcg cgtgcggctg tgtcatcggg cgacgtgcgc gtgagcgccg tccgacagaa
     1801 ctagagggag agactgaaga gacagggacg accgcactaa gtcgcgaacg gaagcgggcc
     1861 gagtcggcgc tggcgggcgc cgcccggccc ttcacattga acctccaacc ttctccgggg
     1921 tgaaagtcaa tgcagccaaa tcctatcaca ttgcgggaaa cgtctgcctc agtgcagggc
     1981 gcagaggcgc cccccgcggc ggctccggcc gcgcagacgg ccttcccgtg ggacgccatt
     2041 aaaattgagg gcgacggcga cggcgcggcc gccctctcgc tcgacgtgct cggcgcgccg
     2101 gccgcgcgcg tgctccgcaa gggccggcgc tacgcggatc agtccgggcg acggcgcggc
     2161 ctctacgcct tctgcaagcg cgcgctcgat gtggcggtcg cggcgctgct gctcgtggcc
     2221 gcgcttcccc ttctggcagc ggtcgcgctg ctcgtcaagg cgacgagcag cggccccgtc
     2281 ttcttccgcc accgccggct gggcctgggc ggcgccgagt tcgattgcct gaagttccgc
     2341 acgatggtcg tgggcgcaga cgagcagctc cgcaggaacg agttcctgcg ccgtcagttc
     2401 gagcagagct acaagctcaa gcacgacccg cgcatcacgc ccgtcggcgc cttcctgcgc
     2461 cggacgagcc tcgacgagct gcctcagctc ctgcacgtcc tccgcggcga gatgtcgttg
     2521 gtaggcccgc gccccatcat ccgccccgag cttgagaagt acagcatcta cggcgcgaag
     2581 ctgctgacgg tcaagccggg cctgagcggc ctctggcagg tctgcgggcg cagcgacacg
     2641 acctacccgc agcgcgtgat gatggacatg cactacattg accaccgcag cctctcgctc
     2701 gacctgcgcc tcctgctccg caccgtcggc gccgtcatcc gcaagagcgg ggcatgctga
     2761 agaaggagat gtcggatgct agatgttaga tgttagtaag aagctctcct tctaccaaca
     2821 tccggcatcc ggcatctgtt cttatgcgaa ttctcttcgt cacgcaaatc tacctgcctg
     2881 agatgggggc gctcccgaac cggctctacc cgttggcgcg gcggctggcc gagtcgggcc
     2941 acgaggtgtt cgtcgcaacg gggatgccga actacccgaa gttcgacaaa gccggaaagt
     3001 tccacggcta ccgcggcagc gccaaggaca tcacggtcga gtacgagcgc aagctcatgg
     3061 attcgcagg
//
LOCUS       DASPKR010000599         5092 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1641987, whole genome shotgun sequence.
ACCESSION   DASPKR010000599 DASPKR010000000
VERSION     DASPKR010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5092)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5092
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1641987"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1860
                     /locus_tag="VD968_16045"
     CDS             <1..1860
                     /locus_tag="VD968_16045"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE15955.1"
                     /translation="TGRNNENNGPLSAEEHSGDSIVKSDTFSGTLASTLTQAVVNEFR
                     FQFARDKEPGEANSDQVEAVIGTGAGTNLSIGRNNFSPRETTIKRVQFIDNLSYVRGR
                     STFKFGVDLNFDRILNFFPGLFSGSYTFPSYTAFATNAPTAYTQNFPGAGTTGGTTEP
                     DISEYAFYAQDDWRVTPQLTLNLGLRYDYQKLACPPVQNPDPLLLNNGIDTSTCPDDR
                     NNFGPRAGFSYAPDARTVVRGGYGIYYARTPAIVLGTAHSQNGINVTGINLNAAGIAA
                     AGLVYPNILTAPPAGASANPNLFVFADDYVNPYVQQGRLGLEREVWEGVSLSATYLFY
                     KGVHLTRTRDVNLFAPVPFARTGPDGQIYTFERFPSARPISRPAGTGPSYNRISLFES
                     ASRSLYNGLALQATQRMRRGFQFIAAYTFSKAEDDRPDQTTVVVGADDAKIVENQINP
                     GLDYGRSDTDIRHRFVFSPVYEWRRIGWSDNAVLRALLSDYTFSTIVQFQSGTPYSAL
                     VSGDPNNDGNRANDRLPGTRRNQFTTPSVYQFDARLTRNIPFSESMRLRLILEAFNVF
                     NRPNVATVNNTFFNLTTISGVPTLTLPSATSAFGTPRTFASPASGTTTFVIPR"
     gene            complement(1977..2723)
                     /locus_tag="VD968_16050"
     CDS             complement(1977..2723)
                     /locus_tag="VD968_16050"
                     /inference="COORDINATES: protein motif:HMM:NF013214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1 family protein"
                     /protein_id="HYE15956.1"
                     /translation="MNEYQSPNQRFDRQPAAWPPQTGGGWGAVEPLTAAEVSVSERMS
                     FVRKVYALFFAATFFAIGGVALGLSIRPLLRFAFEHPFIMLFAMLGGVMGAQAVRHVP
                     VVNLLALFGFTTLTGVVISPLIAVVLMTNPGSILAAGVMTVAIFGGLTAYVFISKKDF
                     SFMRGMVTVGLIVVVVASLLNMFVMSSALGFAVAAAALLLFSGFVLYDTSNIIRRYPV
                     NEYVAGALSLYLDAFNIFLALLRILNAGRR"
     gene            2890..3168
                     /locus_tag="VD968_16055"
     CDS             2890..3168
                     /locus_tag="VD968_16055"
                     /inference="COORDINATES: protein motif:HMM:NF014584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CrcB family protein"
                     /protein_id="HYE15957.1"
                     /translation="MGAVKKILLIGLAGMAGTLRRYWLSPGVGRRYEGRLPLDTIAVN
                     VIGCFAIGFLFHLMRERYAAGEAAAGVVMVGLLVLWAGYSLARPLLPA"
     gene            3168..4067
                     /locus_tag="VD968_16060"
     CDS             3168..4067
                     /locus_tag="VD968_16060"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYE15958.1"
                     /translation="MTKTETGGARARGSGGAPAILYVLGAALLWSTGGLFIKATPELS
                     AFELSFGRSLLAAFTVAYFTRREGFRINGVTAAASVLYAALLLLFVMATKSTTAANAI
                     FLQYTAPVYILIFEPLLFKEKHRARDVAVVAACVVGVALFFVGRLRPEEMTGNLLALA
                     SGACFACFMLLVRHPRAGRVNRASSVIYGNLLLALATAPAFVQGAWKLTAGSLAVIVF
                     LGVVQIGLAYTLFTRGIERGVRSLDAGLVGYIEPVSNPVWVYLFLGERPSAWAILGGG
                     VIITAVVAHTVAGARARSRPGQD"
     gene            4166..>5092
                     /locus_tag="VD968_16065"
     CDS             4166..>5092
                     /locus_tag="VD968_16065"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYE15959.1"
                     /translation="MATARGEIENGGGGNGDGGAAPGQSGILNVSGEGLARGLAWFSI
                     GLGLAELLAPRGVAKVAGVSEGNSALIRLLGLREIAHGVAIFSQGRRPAGAVWSRVVG
                     DALDLACLGAAFASPDSDKGRVAFATANVLAVTALDVLCAQQLSGGQGEGATKGGGAT
                     QVRKSLIINRPAEELYQFWHDFENLPRFMPYLESVRVTGAGRSRWVAKAPAGTTVEWD
                     AEVTEDRPNELMAWRSLEGSQVENSGSVRFEPAPGGRGTIVRVEISYSPPGGALGSAV
                     AWLTGYEPGQQAQESLRCFKQLVETGEVVVSDG"
BASE COUNT          862 a         1817 c         1625 g          788 t
ORIGIN      
        1 acgggccgca acaacgagaa caacggcccg ctctcggccg aggagcactc gggcgatagc
       61 atcgttaaga gcgacacctt ctcggggacg ctcgcctcga cgctcacgca ggcagtcgtc
      121 aacgagttcc gcttccagtt cgcgcgcgac aaggagccgg gcgaggccaa ctccgaccag
      181 gttgaggccg tcataggcac gggcgccggc accaacctct ccatcggccg caacaacttc
      241 agcccgcgcg agaccaccat caagcgcgtg cagttcattg ataacctctc ctacgtgcgg
      301 gggcgcagca ccttcaagtt cggcgttgac ctcaacttcg accgcatact caacttcttc
      361 cccggcctct tctcgggctc ctacacgttc ccgtcctaca cggccttcgc cacgaacgcg
      421 cccacggcct acacgcagaa cttccccggc gcaggcacca cgggcggcac gaccgagccc
      481 gacatctccg agtacgcctt ctacgcgcag gacgactggc gcgtgacgcc gcagctcacg
      541 ctcaacctcg gcctgcgcta cgactaccag aagctcgcat gcccgccggt gcagaacccc
      601 gacccgctgc tcctgaacaa cggcatagac acctcgacct gccccgacga ccgcaacaac
      661 ttcggcccgc gcgccggctt ctcctacgcg cccgacgcgc gcaccgtcgt gcgcggcggc
      721 tacggcatct actacgcgcg cactccggcc atcgtgctcg gcacggccca ctcgcagaac
      781 ggcatcaacg taaccggcat caacctcaac gccgccggca tcgcggccgc cggcctcgtc
      841 tatccgaaca tcctgacggc tccgcccgcg ggcgcctcgg ccaacccgaa cctcttcgtc
      901 ttcgccgacg actacgtaaa cccctacgtg cagcagggcc ggctggggct ggagcgcgag
      961 gtctgggagg gcgtgagcct ctcggccacg tacctcttct acaagggtgt gcacctgacg
     1021 cgcacgcgcg acgtaaacct cttcgcgccg gtgccgttcg cgcgcacggg gcctgacggg
     1081 cagatctaca cgttcgagcg cttcccctcg gcgcgcccca tctcgcggcc cgccggcacg
     1141 gggccgagct acaaccgcat aagcctcttc gagagcgcgt cgcgctcgct ctacaacggg
     1201 ctcgccctgc aggccacgca gcgcatgcgc cgcggcttcc agttcatcgc cgcctacacc
     1261 ttctcgaagg ccgaggatga ccgccccgac cagaccaccg tcgtcgtcgg cgccgacgac
     1321 gccaagatag tcgagaacca gatcaacccc ggcctcgact acggccgctc cgacaccgac
     1381 atacgccacc gcttcgtctt cagccccgtc tatgagtggc gccggatagg ctggagcgac
     1441 aacgccgtcc tgcgcgcgct cctgagcgac tacaccttct cgaccatcgt gcagttccag
     1501 tccggcacac cctactcggc gctcgtctcg ggcgacccga acaatgacgg caaccgcgcc
     1561 aacgaccgcc tgcccggcac tcgccgcaac cagttcacga cgccctcggt ctatcagttc
     1621 gacgcgcgcc tgacgcgcaa cataccgttc tcggagtcaa tgcggctgcg gctgatactc
     1681 gaagccttca acgtcttcaa ccgccccaat gtcgcgaccg tcaacaacac cttcttcaac
     1741 ctgacgacca tcagcggggt gccgacgctc acgctcccgt cggccacctc ggcattcggc
     1801 acgccgcgca ccttcgcctc gcccgcctcg gggacgacca ccttcgtcat cccgcggtag
     1861 ctacaactcg cgatcaagtt cgacttctaa atcgcggccg agacgcacaa aggccgaagg
     1921 cggcgagcct ctccgcagga ggctcgccgc cttcggcctt accgcctgtc ttggcctcag
     1981 cgccggcccg cgttcagtat gcggagcagg gcgaggaaga tgttgaaggc gtcgaggtag
     2041 agcgacaggg cgcccgcgac gtactcgttc acggggtagc gacggatgat gttcgacgtg
     2101 tcgtagagca cgaagcccga gaagagcagc agcgccgccg cggcgacagc gaatccgagc
     2161 gcgctcgaca tgacgaacat gttcaggagc gaagcgacca cgacgacgat gaggccgacc
     2221 gtcaccatcc ctcgcatgaa gctgaagtcc ttcttcgaga tgaagacgta ggccgtcagg
     2281 ccgccgaata tcgccacggt cataacgccc gcagccagta tcgagccggg gttcgtcatc
     2341 aatacgaccg cgatgagcgg tgagatcacc acgcccgtca gcgtagtgaa cccgaagagc
     2401 gcgagcaggt taacgacggg gacgtggcgg acggcctgag cgcccatcac gccgccgagc
     2461 atggcgaaga gcattatgaa cgggtgctcg aaggcgaacc tgagcagcgg ccgtatggag
     2521 aggccgagcg cgacgccgcc gatagcgaag aaggtcgccg cgaagaagag cgcgtaaacc
     2581 ttgcgcacga aagacatgcg ctccgagacg ctcacctcgg cggccgtcaa gggctcgacg
     2641 gcgccccacc cgccgcccgt ctgcggcggc catgccgccg gctgtcggtc aaagcgctgg
     2701 ttaggggact ggtattcgtt catctccaaa tccttttcag ttagtcgaga aaatctccgg
     2761 gcgcgcttta caaagcgccg ccgagaactt agatgcccgt gtgctgccgg ccgatgtatt
     2821 ctgtcacatt cccggcccgg agtggaaccc aggcgcgcgt ctttaaatcc cacgcccgcg
     2881 gcgcttacaa tgggcgccgt gaagaaaatc ctgctgatcg ggctcgccgg gatggccggg
     2941 actctccgcc gctactggct gtcgccgggc gtcggccgtc gctacgaggg caggctcccg
     3001 ctcgacacca tcgccgtcaa cgtcatcggc tgcttcgcaa tcggcttcct cttccacttg
     3061 atgagggagc gctacgcggc gggcgaggcg gccgcgggcg tcgtgatggt tggcctgctc
     3121 gtgctctggg ccggctactc gctcgcgcgg cccctgctcc ccgcctgatg acgaagaccg
     3181 agaccggcgg cgcgcgtgcg cggggcagcg gcggcgcccc ggcgatactc tacgtgctcg
     3241 gggcggcgct cctgtggagt acgggcgggc tgttcataaa ggcgacgccg gagctctcgg
     3301 ccttcgagct ctccttcggc cgctcgctac tggccgcgtt cacggtcgcg tacttcacgc
     3361 ggcgcgaggg cttccgcata aacggcgtga cggccgcggc ctccgtgcta tacgccgcgc
     3421 tcttgctcct cttcgtgatg gcgacgaaga gcactacggc cgccaacgcc atcttcctgc
     3481 aatacaccgc gcccgtctat atcctcatat tcgagccgct cctgttcaag gagaagcacc
     3541 gcgcgcgcga cgtggccgtg gtggcggcgt gcgtcgtcgg ggtcgccctg ttcttcgtcg
     3601 gccgcctccg gcccgaagag atgacgggga acctcctggc cctcgcctcc ggcgcgtgct
     3661 tcgcctgctt catgctgctc gtgcgccacc cgcgcgcggg gcgcgtcaac cgcgcctcct
     3721 ccgtcatcta cgggaacctc ctgctcgcgc tcgccacggc cccggccttc gtgcagggcg
     3781 cctggaagct gacggccggc agcctcgccg tcatcgtttt cctcggggtg gtgcagatag
     3841 ggctggccta cacgctcttc acgcgcggca tagagcgcgg cgtgcgctcg ctcgacgccg
     3901 ggctcgtagg ctacatcgag ccggtctcga accccgtctg ggtctatctc ttcctcggcg
     3961 agcgcccctc cgcctgggcc atcctcggcg gcggcgtcat catcacggcc gtagtcgccc
     4021 acaccgtagc cggcgcgcgc gctcggagcc ggccgggaca ggattaactg aaactcataa
     4081 caaaaacgac aacgtatcgc gcgaccattc gccccgaagg gctttgctgt gcacaggatt
     4141 gggctttaaa aggagggtga gcacgatggc gacggcgcga ggcgaaatag aaaacggcgg
     4201 gggcggcaac ggcgacggcg gcgcggcgcc ggggcagtct gggattctga acgtgagcgg
     4261 cgaggggctg gcgcgcgggc tcgcgtggtt cagcataggc ttggggctcg ccgagctcct
     4321 ggcgccgcgc ggcgtggcga aggtcgcggg cgtgagcgaa ggcaatagcg ctctcatacg
     4381 cctgctcggc ctgcgcgaga tagcgcacgg cgtcgccatc ttctcgcagg ggcgcaggcc
     4441 cgcgggcgca gtctggtcga gggtcgtagg cgacgcgctc gacctggcct gcctgggcgc
     4501 cgccttcgcc tcgcccgact cggacaaggg ccgcgtcgcg ttcgccacgg cgaacgtgct
     4561 ggccgtgacg gcgctcgacg tgctctgcgc gcagcagcta agcggcggcc agggcgaggg
     4621 ggcgactaag ggaggagggg cgacgcaagt gaggaagagc ctgataatca accgaccggc
     4681 ggaagagctt taccagttct ggcacgactt cgagaacctg ccgcgcttca tgccctacct
     4741 cgagtcggtg cgggtgacgg gcgcgggccg ctcgcgctgg gtggcgaagg cgccggccgg
     4801 caccaccgtc gagtgggacg ccgaggtgac ggaagaccgc ccgaacgagc tgatggcgtg
     4861 gcgctcgctg gaaggctcgc aggtggagaa ctccggctcc gtccgcttcg agccggcgcc
     4921 cggagggcgc ggcaccatcg tccgcgtcga aatcagctac agcccgccgg gcggcgcgct
     4981 cgggtctgcc gtcgcctggc tcacgggcta cgagccgggc cagcaggcgc aggagtccct
     5041 gcgctgcttc aagcagttgg tcgagacggg cgaggtcgtc gtctccgacg gc
//
LOCUS       DASPKR010000600         4127 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_997294, whole genome shotgun sequence.
ACCESSION   DASPKR010000600 DASPKR010000000
VERSION     DASPKR010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4127)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4127
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_997294"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1459)
                     /locus_tag="VD968_16070"
     CDS             complement(<1..1459)
                     /locus_tag="VD968_16070"
                     /inference="COORDINATES: protein motif:HMM:NF012652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HYE15960.1"
                     /translation="MSAKLGEILVRENLLTPQQLREALEFQREHGGRLGYNLVKMGMV
                     SDDMITAVLSRQYGVPSVNLELFDIEDSVIRLIPREVADKYSVLPLSRVGATLTLAMV
                     DPTNVFAMDDIKFMTGLNIEPVVVSEASVQDAISKHYAQSREIELARDLDESPNGNGN
                     GFHDSLPDSTMTLDQLDFEADGADGLEVIDEDEEIDLTNLTRMSEDAPVVRLVNVLLA
                     DALQRGASDIHVEPYEKELRIRFRIDGVLYDVMHPPLRLRDALISRIKIMSKLDIAEK
                     RLPQDGRIKIKLKAHGRSRELDFRVSTLPTLFGEKVVLRLLDKERLMLDMTKLGFEPE
                     SLVKFQRNISKPYGMVLVTGPTGSGKTNTLYSALQSLNTSETNIMTAEDPVEFNLVGI
                     NQVQMKEQIGLNFAAALRSFLRQDPNIVLVGEIRDFETAEIAIKAALTGHLVLSTLHT
                     NDAPSTISRLMNMGIEPFLVATSVNLIQAQRLIRRI"
     gene            complement(1750..3057)
                     /locus_tag="VD968_16075"
     CDS             complement(1750..3057)
                     /locus_tag="VD968_16075"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE15961.1"
                     /translation="MRSKSFFRTIAAALLLAACSFVASAQTTQVSGKVTLKQADGTLL
                     PVAGAQVDIYRTDIKGEYHVKTNKKGEYTHAGIPFVGTYTLIVSAPGARPTYATGLRF
                     TTTQVADFTLEPGDGSKLTLEQLKTMGAATSGGGTAPAAPAAEGKEEKARREAFEKER
                     AAIEEENKKISNANEIINRTFKAGNEAFNAKNYDAAIGFYNEGLAAREEPALYANKSV
                     ALRLRGAETFNKVINSSDQATKTAGLESAYKDWRDAVEAGKKAMDMMNALTVPTDPTG
                     KTNYDKNKLAAITAYAEAMKLVGTKVDKSQAEAAFKAYTEFAAAELDPTKKPQRISEA
                     AKIFFDAGDYNRAAEEYRKIVETDPENAEANLYLGFSLFNSGEKAKFQEAANYLGKFS
                     EKAADTHPLKADVKSILEFLKTQENIKPERITPTRTTTGRRRG"
     gene            complement(3196..3948)
                     /gene="queC"
                     /locus_tag="VD968_16080"
     CDS             complement(3196..3948)
                     /gene="queC"
                     /locus_tag="VD968_16080"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: protein motif:HMM:NF018242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HYE15962.1"
                     /translation="MGGSPDGKEFVNYDEAGDESVAVVNDGATTPLSVCLVSGGMDSC
                     VTAAIAREEGGELAFLHVSYGQRTEARERRAFEEIADFYGVGRRLAVSIEPLARIGGS
                     SLTDQSVPVAAADLSSREIPTSYVPFRNAHLLSIAVSWAEVTGAGRVYIGAVAEDSSG
                     YPDCRPEFYEAFQRVIDAGTRPTTRVEIRTPVIHMRKAEIIRRAVELGAPLHLTWSCY
                     GAEERACGRCDSCALRLRAFAEAGVRDPIPYA"
     gene            complement(3948..>4127)
                     /locus_tag="VD968_16085"
     CDS             complement(3948..>4127)
                     /locus_tag="VD968_16085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15963.1"
                     /translation="RAVIEKYDLTERARAVLVSPVWGSTDLKELAELVASSGLDVRMQ
                     LQLHKYIWGPEVHGV"
BASE COUNT          647 a         1235 c         1436 g          809 t
ORIGIN      
        1 agatgcggcg gatgaggcgc tgcgcctgga tgaggttgac cgaggtggcg acgaggaagg
       61 gctcgatgcc catgttcatc aggcgggaga tggtggaggg ggcgtcgttg gtgtggaggg
      121 tggagaggac gaggtggccg gtcagggcgg ccttgatggc gatctcggcc gtctcgaagt
      181 cgcgaatctc gccgacgagg acgatgttcg ggtcctggcg gaggaaggag cgcagcgcgg
      241 ccgcgaagtt caggccgatc tgctccttca tctgcacctg gttgatgccg acgaggttga
      301 actcgacggg gtcttccgcc gtcatgatgt tcgtctcgga cgtgttcagc gattgcagcg
      361 ccgagtagag cgtgttcgtc ttgccggagc cggtggggcc tgtgacgagc accatgccgt
      421 agggcttaga gatgttgcgc tggaacttga cgagagactc gggctcgaac cctagcttcg
      481 tcatgtcgag catcagccgc tccttatcca gaaggcgtag caccaccttc tcgccgaaga
      541 gcgtcgggag ggtggaaacg cggaagtcga gctcgcgcga gcggccgtgc gccttgagct
      601 ttatctttat gcggccgtcc tgcggcaggc gcttctccgc gatgtcgagc ttcgacatga
      661 tcttgatgcg ggagatgagc gcgtcgcgca gcctgagcgg ggggtgcata acgtcgtaga
      721 gcacgccgtc tatgcggaag cgtatgcgca gctccttctc gtagggctcg acgtgtatgt
      781 cggaggcgcc gcgctgtagg gcgtcggcca gcagcacgtt gacgagccgg acgacgggcg
      841 cgtcctcgct catgcgcgtc aggttcgtga ggtcaatctc ctcgtcctcg tcaatgacct
      901 ccagcccgtc ggccccgtcg gcctcgaagt cgagctggtc gagcgtcatc gtcgagtcgg
      961 ggagggaatc gtggaagccg ttgccgttgc cgttcgggct ctcgtcgagg tcgcgcgcaa
     1021 gctcaatctc gcgcgattgc gcgtagtgct tcgagatggc gtcctgcacg ctcgcctcgg
     1081 agacgacgac gggctcgatg ttgaggcccg tcatgaactt tatgtcgtcc atcgcgaaga
     1141 cgttcgtcgg gtcaaccatc gcgagcgtca gagtcgcccc cacgcgcgag agcggcagca
     1201 ccgagtactt atccgccacc tcgcgcggta tcagccttat gaccgagtcc tctatgtcga
     1261 acagctcgag gttgacgctc ggcaccccgt actgcctcga cagcacggcc gttatcatgt
     1321 cgtccgagac catgcccatc ttgacgaggt tgtagccgag ccggcccccg tgctcgcgct
     1381 ggaattccag cgcttcgcgg agctgctgtg gggtcaggag gttttcgcgg acaaggattt
     1441 cgccgagttt ggctgacata cttggagaag ttccgacggt tgtgaactca aacgtacagg
     1501 cggggcggcg tggaaacgta cgggcggcgg cttgggtgcc gtgcgcggcc ggcattcgag
     1561 agagcggccg gtcttaaaac gcaagcagcg caaacgctgt ttgccaaaag catgttactg
     1621 tttaaacatg cggctgtcaa gatgattgtg gaaaacggcc cgggcgcgtc cagaagacgc
     1681 ggaaaggccg cggccgggcg aacccgaacc gcggccttct gaccgggtta agttgttgaa
     1741 aacgaccgac taaccgcggc ggcggcccgt ggtcgtgcgg gtaggcgtga tcctctcggg
     1801 cttgatgttc tcctgggtct tcaggaactc gagaatggat ttcacgtcgg ccttgagcgg
     1861 gtgcgtgtcg gcggccttct cgctgaactt gccgaggtag ttggcggcct cctggaactt
     1921 ggccttctcg cccgagttga agagcgagaa gccgaggtag aggttcgctt cggcgttctc
     1981 ggggtcggtc tcgacgatct tgcggtactc ctcggcggcg cggttgtagt cgccggcgtc
     2041 gaagaaaatc ttggcggcct cggagatgcg ctgcggcttc ttggtcgggt cgagctcggc
     2101 ggcggcgaac tccgtgtaag ccttaaacgc cgcctcggcc tgcgacttgt ccaccttcgt
     2161 gccgacgagc ttcatcgcct cggcgtaggc ggttatggcg gccagcttgt tcttgtcgta
     2221 gttcgtctta cccgtcgggt ctgtggggac ggtcagggcg ttcatcatgt ccatggcctt
     2281 cttgccggcc tcgacggcgt cgcgccagtc cttgtaggcc gactcaagcc cggcggtctt
     2341 ggtggcctga tccgaggaat tgatgacctt gttgaaggtc tcggcgccgc gcaggcgcag
     2401 cgcgaccgac ttattggcgt agagcgcagg ctcctcgcgc gcggccaggc cctcgttgta
     2461 gaagccgatg gcggcgtcgt agttcttggc gttaaatgcc tcgttaccgg ccttgaaggt
     2521 gcggttgatg atctcgttgg cgttggagat cttcttgttc tcttcctcga tggcggcccg
     2581 ctccttctcg aaagcctccc ggcgggcttt ctcctccttg ccctcggcgg cgggggccgc
     2641 cggggcggtg ccgccgccgg aggtcgctgc gcccatcgtc ttgagctgtt cgagcgtgag
     2701 cttcgagccg tcgccgggct ccaaggtgaa gtcggccacc tgcgtcgtcg tgaagcgcag
     2761 gcccgtggcg taggtcgggc gcgcgccggg ggcgctcact atcagcgtgt aggtgccgac
     2821 gaaggggatg cccgcgtgcg tgtactcgcc cttcttgttg gtctttacgt ggtactcgcc
     2881 cttgatatcc gtgcggtaga tgtccacctg cgcgcccgcg acggggagaa gggtgccgtc
     2941 ggcctgtttg agcgtgacct tgccggagac ctgcgtcgtc tgcgccgagg cgacgaagga
     3001 gcaggcggcc agcaggagcg ctgcggcgat tgttcggaag aatgacttgg aacgcatggt
     3061 cagtggtctc ctaattcgga ttagtgccgg cgcctctcgg ggtcgaagga ggccgcgcat
     3121 atgatgcggg agcgcccggg gcggttgtcg gttccggccc cattctagca gcaaaagccg
     3181 cgggtttgcg agcgtctagg cgtaagggat cgggtccctg acgcccgcct cggcgaaggc
     3241 ccggagccgc agcgcgcaag agtcgcagcg cccgcaggcc cgctcctcgg cgccgtagca
     3301 agaccatgta aggtgcagcg gcgcgcccaa ctccacggcg cgacgaatta tctcggcttt
     3361 ccgcatgtga attacgggcg tgcggatttc gacgcgcgtc gtggggcgcg tgccagcgtc
     3421 aattacgcgc tggaaagctt cgtagaactc gggccggcag tcggggtagc cggacgaatc
     3481 ctcggccacg gcgccgatat agacgcggcc cgcgcccgtc acctcggccc agcttacggc
     3541 tatcgagagt aggtgcgcgt tgcggaacgg cacgtagctc gtcgggattt cgcgcgagga
     3601 gaggtcggcc gcggcgacgg ggacggactg gtcggtcagg gatgaaccgc ctatgcgcgc
     3661 caagggctcg attgagacgg cgaggcggcg gccgacgccg tagaagtcgg ctatctcctc
     3721 gaaggcgcgg cgctcgcggg cctccgtgcg ctggccgtag gagacgtgca ggaatgccag
     3781 ctcgccgccc tcctcgcgcg caatcgccgc cgtaacgcac gagtccatcc cgcccgagac
     3841 caggcagacg gacagaggcg ttgtcgcgcc gtcgttcacg acagcgacgc tttcgtctcc
     3901 cgcttcgtcg tagttgacga actctttccc gtccggcgag ccgcccatca gacgccgtga
     3961 acctccggcc cccatatgta cttgtgaagc tgcaactgca tgcgaacgtc aaggccgctg
     4021 gacgcgacca gctcggccag ctcctttaaa tccgtcgagc cccagacggg cgagacgagc
     4081 acggcgcgcg ctcgctccgt caggtcgtac ttttcaatca ccgcgcg
//
LOCUS       DASPKR010000601         2023 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_480535, whole genome shotgun sequence.
ACCESSION   DASPKR010000601 DASPKR010000000
VERSION     DASPKR010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2023)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2023
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_480535"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..411
                     /locus_tag="VD968_16090"
     CDS             <1..411
                     /locus_tag="VD968_16090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15964.1"
                     /translation="PEGQLSKTFKYTVSPVAERVSGTIEASSGGATVSQTLTLRPLRP
                     TSLAFSPSRLKGGGVSVGTVTLECSAAPGDILVTLEATAPGAASVPPSMVVPAGSKSA
                     TFSVTTKAVTSSRTVTVKATTGGVSVSASLIVDP"
     gene            complement(486..728)
                     /locus_tag="VD968_16095"
     CDS             complement(486..728)
                     /locus_tag="VD968_16095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15965.1"
                     /translation="MFARAVGGGGRRGGASHHAEAVLARLDPALAAPVVLSEEEFRQL
                     VAFLRGGLQDPRATPHELRKLIPSRLPSGRAVTNFQ"
     gene            complement(784..854)
                     /locus_tag="VD968_16100"
     tRNA            complement(784..854)
                     /locus_tag="VD968_16100"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(820..822),aa:Gln,seq:ctg)
     gene            986..1324
                     /locus_tag="VD968_16105"
     CDS             986..1324
                     /locus_tag="VD968_16105"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HYE15966.1"
                     /translation="MSENDSRERNARGGDSVMRHDPADCEARMEAFADLAARVRHEIN
                     NPLTGLIGQAQLLLREELSETARRRVLTIEQLAQRIRDTVAELRSVQRLNPSPSPEPG
                     DDEPREPPRH"
     gene            complement(1344..1949)
                     /locus_tag="VD968_16110"
     CDS             complement(1344..1949)
                     /locus_tag="VD968_16110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15967.1"
                     /translation="MRALVCIVALSLPLQAAATPARAQEKSAAARRATDGAEKAPESA
                     ARTLKIPAGTKLEVEVAHTVNSQHFKAGDLISFTVMNPVVVDGVTVIEKGATATARIV
                     ESKRGGHFGKAGRLSWAMKEVTAVDGSRVPLQASGRLVGDSKGAKVATKVVLTGVVLW
                     PIAPVALLHGFKRGANAELPAGKLFEVEVRGESVVKAPAQP"
BASE COUNT          342 a          720 c          649 g          312 t
ORIGIN      
        1 cccgaagggc agttgtctaa gaccttcaag tacacggtct cgccggtggc cgagcgtgtg
       61 agcgggacaa tcgaagcctc ttcgggcggc gccaccgtct cgcagacatt gacgctgcgg
      121 ccgttgcggc cgacctcgct cgccttcagc ccctcgcggc tcaaaggcgg gggcgtctca
      181 gtcggcaccg tcacgctcga atgcagcgcg gcgccgggcg acatcctcgt gacgctcgag
      241 gcgacggcgc cgggcgcggc ctccgtcccg ccgtcgatgg tagtcccggc gggcagcaag
      301 agcgccacct tctcagtgac taccaaggcg gtgacgtctt cgagaaccgt gaccgtcaag
      361 gcgaccacgg gcggcgtgag cgtaagcgcc tcgctcatcg ttgaccctta agccggggcg
      421 cgagggaaaa aaggaagggg cggcctcata acaaggccgc cccttttttc tttccagccc
      481 ctccgctact ggaagttcgt gaccgcgcgg ccgctcggca gcctcgacgg gattagcttg
      541 cgcagctcgt gcggcgtggc gcgcgggtct tgcagccccc cgcgcaggaa ggcgacgagc
      601 tgacggaact cttcttcgga gagcacaacg ggcgcggcga gcgccgggtc gagccgcgcg
      661 agcacggctt cggcgtgatg agaagcacct cctcgtcgcc cgcctcctcc cacggcgcgg
      721 gcgaacatag caagggcggg ctcttgagaa actctcaaga gcccgcccgc cgaaccgacc
      781 gaactgccgg actaggactc gaacctagaa accctgatcc agagtcaggt gtgatgccat
      841 ttcaccatcc ggcaataaac aacttgttag acggcccccc aacaagtgtg cgatattaaa
      901 tttacggacg gcgggggcgg ttgtcaaccg ccgggcgcgc ccttttttga ctctggttgg
      961 ggctcccgcg gggccatttt tagagatgag cgaaaacgac tcgcgcgaaa gaaacgcccg
     1021 cgggggcgac agcgttatgc ggcacgaccc ggccgactgc gaggcccgca tggaagcctt
     1081 cgcagacctc gcggcccgcg tgcgccacga gataaacaac ccgctcacgg gactcatcgg
     1141 gcaggcccag ctcctgctgc gcgaggagtt gagcgagacg gcccgccgcc gcgtgctcac
     1201 catcgagcag ctcgcccagc gcatacgcga caccgtcgcc gagcttcgca gcgtccagcg
     1261 cctcaacccg agcccgtcgc cagagcccgg cgacgacgag ccccgagagc cgccgcggca
     1321 ctgagcgcgc cgcccgagac tcttcacggt tgcgcgggcg ccttcacgac cgattcaccc
     1381 cgaacctcga cctcgaagag cttgccggcg ggcagctcgg cgttggcgcc ccgcttgaac
     1441 ccgtgcagca gagcgacggg cgctatcggc cagagcacga cacctgtgag caccaccttc
     1501 gtcgcgacct tcgcgccctt gctgtcgccc acgagcctgc ccgaagcctg tagcggcacg
     1561 cgcgagccgt ccacggccgt cacctccttc atcgcccacg aaagcctgcc cgccttcccg
     1621 aagtggccgc ccctcttcga ctcgacgatg cgcgcggtcg ccgtcgcgcc cttctcgatg
     1681 acggtcacgc cgtcaaccac caccgggttc atgacggtga aggatatgag gtcgcccgcc
     1741 ttgaagtgct gcgagttgac ggtgtgcgcg acctcgacct cgagcttcgt cccggccgga
     1801 atctttaaag tccgagcggc ggactccggc gccttctcag ctccgtcagt cgcccgccgc
     1861 gcggcggccg atttctcctg cgcgcgcgcg ggcgtcgcgg ccgcctgaag cgggagcgac
     1921 agcgcgacta tacagacgag tgctctcatg gcggggtctc tctcctgacg ttgtctcggc
     1981 tcgtcggaaa tgaaaacgcg gcgggctcgg gtgcctgccg cgc
//
LOCUS       DASPKR010000602         9344 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_94341, whole genome shotgun sequence.
ACCESSION   DASPKR010000602 DASPKR010000000
VERSION     DASPKR010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9344)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9344
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94341"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1188)
                     /locus_tag="VD968_16115"
     CDS             complement(<1..1188)
                     /locus_tag="VD968_16115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15968.1"
                     /translation="MYEPRSPRRNSHRSGDRLKAEAFNAPAVAKPRGLSFGLIALTIA
                     LLALARPAAAQQYTAVRLQPQGFTGSRALGVSGAQQVGTVTVPLNGVPHERAVLWSGT
                     SASAVNLNPDGFYRSFAKATDGVRQVGYGGGPATGGCYFYTDYGYSCGSHALLWSGTA
                     ESVVDLHPPTDFYYSAAYGIHGNQQVGWGYFSKYIIGYGRMAGNHALLWSGTAASVVD
                     LHPKFAGTIGDSVALGIFGGQQVGWTESSGALSGQSLAHSVPHATLWLGTAESAVDIN
                     PPGFEGSVAYGTSGTQHVGWGYKQYPTEKYLTYGLYCNPLDICVVGCDYNPYCYLNKV
                     FGLRTFDVETHALLWFGNTVGAIDLHPVDATLSVDVSTIDLHPEGFTQTMALATNGSQ
                     QVGS"
     gene            complement(1393..1905)
                     /locus_tag="VD968_16120"
     CDS             complement(1393..1905)
                     /locus_tag="VD968_16120"
                     /inference="COORDINATES: protein motif:HMM:NF024736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HYE15969.1"
                     /translation="MNGSTPPFASQDIPTDEQWATVGPLIPAPAPRADRRGRPWRGPR
                     EVLGGVLWVLGNDAHWRALPERFPPHQTCRRRFRQWLIDGTLRVVLEALEQDLHERGG
                     LDVAECTHDDALGRKGAEERRAGETPEPASWRRQTAALLLSPATRRLLRRTGSPLARR
                     FWPAVGGSHF"
     gene            complement(2343..3584)
                     /gene="clpX"
                     /locus_tag="VD968_16125"
     CDS             complement(2343..3584)
                     /gene="clpX"
                     /locus_tag="VD968_16125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HYE15970.1"
                     /translation="MVRRSDDTLRCSFCGKSQNEVKKLIAGPTVYICNECIDICNEII
                     TDDQQAEAVASRPPLPKPAEIKSFLDEYVIGQEETKKRLAVAVYQHYKRIELARRRTD
                     VEIQKSNILLMGPTGTGKTLLAQTLARMLSVPFTIVDATTLTEAGYVGEDVENIILKL
                     LQAANGDVERAQQGIIYIDEVDKICRKDENPSITRDVSGEGVQQALLKILEGTVANVP
                     PQGGRKHPHQEFFPVDTTNILFICGGAFVGLEKVIERRARNKSLGFHAQIKPGSSRYS
                     DALANVQPEDLVKYGLIPEFVGRLPVTGVLHELDEGALIRILTEPKNALIKQYQKKFE
                     YDNVKLRFTDDALRAIAHQAVERKVGARGLMMIMEELLLDAMYTLPSQKRIKEFVITR
                     EMVERRRAVPGELLAGVDEAA"
     gene            complement(3816..4457)
                     /locus_tag="VD968_16130"
     CDS             complement(3816..4457)
                     /locus_tag="VD968_16130"
                     /inference="COORDINATES: protein motif:HMM:NF009205.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HYE15971.1"
                     /translation="MIRIPSLVEELMQTPRQYIPNPTVFEQTPRGERYSDVYSRLLRD
                     NIVFLGTPIDDTVANLIVAQLLFLEAEDPEKDINLYVNSPGGSITAGMAIYDTMQFIR
                     PDVVTICLGQCASFAALLLAAGAKGKRFALPNSRILIHQPHVAGGIGGQASDIKIQAE
                     EIIRMRELTSQILARHTGQPFDVIEKDVERDRIMSAAQAKEYGLIDEVITHRQ"
     gene            complement(4584..5948)
                     /gene="tig"
                     /locus_tag="VD968_16135"
     CDS             complement(4584..5948)
                     /gene="tig"
                     /locus_tag="VD968_16135"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR00115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HYE15972.1"
                     /translation="MKTEIVEVSQTRREIKIELEPEDLRAEAERVAQEYARAATVPGF
                     RKGHAPLAVVRTRYKKEIRSDVLQRLVPQAVEQAIRESGLTVLGQPDVHLEGEGLDDF
                     GREPLSLHAHVEVLPEVSLGEYKGLEAARRKRPVTDESVEEVIKNLLEASASLQPVED
                     RASEEGDTVTVDIQGRYLDPPSDEDINASDVDIVLGGEGVLPVFTEQLTGVRPDEAKT
                     FTVTYPEDFSSKGLAGKTVEYTTTVTAVRRKELPALDDEWVRSLGEEEVTTVEQLRER
                     VRENLTKSSEQESEHRLRGELLDKLLESHQFEVPETLVSYQAGEMFQATLRDMMRRGI
                     DPRSADVNWEAMRDVVRERAGADLRGSMLLERIAEAEKIEVTDEEVEAEIQLMADSSR
                     QSVEQVRAALTKQGGERSIADRLRNRKALDLLVKHAVIREEEWRDEGQGDAEEEGGAG
                     AEQG"
     gene            complement(6029..6110)
                     /locus_tag="VD968_16140"
     tRNA            complement(6029..6110)
                     /locus_tag="VD968_16140"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6074..6076),aa:Leu,seq:tag)
     gene            complement(6212..>9344)
                     /locus_tag="VD968_16145"
     CDS             complement(6212..>9344)
                     /locus_tag="VD968_16145"
                     /inference="COORDINATES: protein motif:HMM:NF019912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15973.1"
                     /translation="DVPGQPDVTFSNRGYGTQAAIDPVILGAQKVRLNDPVMFFMGTN
                     NAPGDYRQSGCAACHVVYANDRSEYNSGPWAKYGNSGRTAPDNPDPTINKAEKGHPIE
                     HKFTKSIPSSQCITCHVHNGNGFLNTFLGYMWWDQQTDGEYLWPKKQHNPTPEELDKA
                     GHFNPEEAAARGLWGKPEFLFEASRLNSEMKKMQISDYHGHGWMFRRVYKLNRKGEYL
                     DKDGKVIPYDDPELFRGKAGGEGKAVHLKDIHLERGMHCVDCHYSQDNHGTGKLYGDR
                     RAVIEIACEDCHGTARERVKLSQLRTSGFGAPEGGNSMNQPARRMPFNRARFVERQGK
                     LFQRSMVTQNDPKTGKIMEWEVPQVMDSVTPGNPRFNPKSARAKTILRDNETWGAVPA
                     DAKQLAHDNSRVSCVSCHSSWTTNCWGCHLSASVNTKKPMLHSEGDETQVYPSYNPQV
                     LRSDGYMLGIDGSVQEHKVMPVRSSSAVTFSVTNANRENVINHAPTISSAGFNGNAFN
                     THPPHTVRKTETKECSDCHVSKANDNNAWLSSVLMLGTNYVNFMGRFAYVAEGKSGLS
                     ATVVAELTEPQAVIGGHMHQLAYPDWHAKHVARGGRLQENYAHRSKESNQVQMYGEFL
                     LSAAGDDGLVVYDIANVANKGFSQRITISTFSSLGQKHTVDTKAAVGVAVGSPAPLDP
                     KRNPGQTEDQRRWLVLNEEQPLAPLYGYAFVADRAEGLVTVDITTLTDGVPTNNHLKR
                     AATYNPEGRLTGARSINVVGNYVYILTDRALQIVSVADPAAPRWVGEVTSPLRDPRSL
                     AVQFRYCFVTDADGLKVLDVTDLERPRPVEGATVRLGDARGIYLVRTYALVAAGADGL
                     ALVDIERPEQPRLDQSFNDGGRLNDARDVKAGMMNVSLVAYVADGRNGLKVVELTNPN
                     SVPGNLGYSPRLAPSVIAHYPTKGPAVQVSEGYRRDRGVDESGNQVAVFGRRGARPFN
                     LEELRRMYLRDGRLYTVTDEPGQPTAGKSAQSGASWLGALARLFGTGFGWLGLFIVVP
                     PAFVLRRRRRGSR"
BASE COUNT         1447 a         2936 c         3182 g         1779 t
ORIGIN      
        1 ggagccaact tgctggctgc cgttcgtggc gagggccatc gtctgtgtga agccttcggg
       61 gtggaggtct atggtgctga catcaaccga cagggtggcg tccacggggt ggaggtctat
      121 cgcgccgacc gtgttcccga accagagcag ggcgtgcgtc tccacgtcga aggtgcgcaa
      181 gccgaagacc ttattcaaat agcagtaggg gttgtagtcg cacccaacta cgcagatgtc
      241 taaggggttg cagtaaaggc cgtaggtcaa atacttctct gtggggtact gcttgtagcc
      301 ccacccgaca tgctgcgtcc ccgaagtgcc gtatgcgacc gaaccctcga agcccggcgg
      361 gttgatgtca acggcgcttt cagccgtgcc tagccagagc gtcgcatgtg ggacggagtg
      421 ggcgagcgat tggccggaca atgctcccga ggactctgtc cagccgacct gctgaccgcc
      481 gaagatgcct aaggctaccg agtctccgat tgtgcctgcg aatttcgggt ggaggtctac
      541 gacgctggca gccgtccccg accagagcag ggcatgattg cccgccatgc gtccgtaacc
      601 gatgatgtac ttgctaaagt agccccagcc gacttgctgg ttcccgtgga tgccgtaagc
      661 ggctgagtag taaaagtccg tcggagggtg caggtcaacg acgctctccg ccgtgcccga
      721 ccacaggagc gcatgcgagc cacacgagta gccgtaatcg gtgtagaaat agcagccccc
      781 ggtggcgggg ccgccgccgt agccgacctg ccgcacaccg tccgtagcct ttgcgaacga
      841 acggtagaag ccgtcggggt tgaggttcac ggcgctggcc gacgtgcccg accacagcac
      901 ggcgcgctca tggggtacgc cgttgagagg gacggtcacc gtcccgacct gctgcgcgcc
      961 tgagaccccc aaggctcgcg agcccgtgaa gccctggggc tgaagtctca ccgccgtgta
     1021 ctgctgcgca gcggcggggc gcgccagcgc cagcaaagct atcgtcaggg ctataagccc
     1081 gaacgaaagg ccgcggggct tcgcgacggc gggcgcgtta aaagcttcgg ccttcaggcg
     1141 atcaccactt ctgtgagaat tcctgcgagg gctcctgggt tcgtacatga tgcgcctcct
     1201 ttccaacggg gcatcggccc cgagaagtgc gaggtgagtc aacgtccgat ggcagggccg
     1261 tgggggggcg gcagtgccgg cctggtggac gaggcggaag cccttctgcg gcgcctacaa
     1321 cttaccgggc gcggttgagg ctgacttgag cttggctcat aaatagacct cgggcgaaaa
     1381 actcggcggg cgtcaaaaat ggctgccgcc gaccgcaggc cagaacctcc gggccaacgg
     1441 cgacccggtg cggcgcagca gcctccgcgt cgcgggagag agcaggagcg ccgccgtctg
     1501 ccgccgccag gaggccggct ccggcgtctc gcccgcgcgc ctctcttcgg cgcccttcct
     1561 cccgagcgcg tcgtcatggg tgcattcggc aacgtccaac cccccgcgct cgtgcaggtc
     1621 ttgttcgagc gcttcaagca cgacgcggag cgtgccgtca atcaaccact gtcggaaccg
     1681 gcggcggcag gtctggtgcg gcgggaagcg ttcgggcagc gcgcgccagt gcgcgtcgtt
     1741 gccgagcacc cacagcaccc cgcctaagac ttcgcgcggg ccgcgccacg gcctgcccct
     1801 tcggtctgcg cggggcgccg gggccggtat gagcggcccg accgtcgccc actgctcgtc
     1861 cgtcggtatg tcctgactcg cgaagggagg cgtgctgccg ttcataagac cctccctcgg
     1921 aagcgcgcgc atgccgggac ggcccgtgct cctcacccgg cgcgtcacgc gcggcgcttc
     1981 agcccgcggc ggcctcagcc ggcagggctt acggggcaag agttctagag gggcagttac
     2041 gggcggaacc ggggaaaggg cgggaactct actgcgggct tatctctgtg cgtcaagtcg
     2101 gggttggcgg tcgggatgga tatttgcctc taccattatt cgcgagaacg gagggcggga
     2161 accaccacgg gacatacttg cgggccgtcc tccggctcac tgactttcta tttatctatg
     2221 tagctttgag gcaaatcgtt tcaagaggag tctggaagag agaggatgaa tcttttttag
     2281 acaaaggtat aggggatgag agcgctgcct catccccttc cgttcacggg tcgaatttaa
     2341 acttacgctg cctcgtcaac gccggccaga agctcgccgg gcacggcgcg ccggcgctca
     2401 accatctcgc gggtgatgac gaactccttg atgcgcttct gcgaggggag cgtgtacatg
     2461 gcgtcgagca gcagctcttc catgatcatc atcagccccc gcgcgccgac cttgcgctcg
     2521 accgcctgat gagcgatggc gcgaagcgcg tcgtcggtga agcgcagctt gacgttgtcg
     2581 tactcgaact tcttctggta ctgcttgatg agcgcgttct tcggctcggt gagtatgcgt
     2641 atgagcgcgc cctcgtcgag ctcgtgcagg acgccagtga cggggaggcg gccgacgaac
     2701 tcggggatga ggccgtactt gaccaggtct tcgggctgga cgttggcgag cgcgtccgag
     2761 tagcggctgc tgccgggctt gatctgcgcg tggaagccga gcgacttgtt gcgcgcgcgc
     2821 cgctcgatca ctttctccag cccgacgaag gcgccgccgc agatgaagag tatgttggtc
     2881 gtgtcaacgg ggaagaactc ctggtgcggg tgcttgcgcc cgccctgcgg cgggacgttc
     2941 gccacggtgc cttccaggat tttaagtagt gcctgctgga cgccctcgcc cgacacgtcg
     3001 cgcgtgatcg aggggttctc gtccttacgg catatcttgt caacctcgtc tatgtagatg
     3061 atgccctgct gcgcgcgctc gacgtcgccg ttcgcggcct gtaggagctt gaggatgatg
     3121 ttctcaacgt cctcgccgac gtagccggcc tccgtcagag tcgtcgcgtc aacgatggtg
     3181 aaggggacgg agagcatgcg ggccagcgtc tgcgcgagaa gggtcttacc cgtccccgtc
     3241 ggccccatca gcagtatgtt cgacttctga atctcaacgt ccgtgcggcg gcgcgccagc
     3301 tcgatcctct tgtagtgctg atagacggcg acggcgaggc gcttcttcgt ctcctcctgg
     3361 ccgatgacgt actcgtcgag gaacgacttt atctcggcgg gcttcggcag aggcgggcgc
     3421 gaggccacgg cctcggcctg ctggtcgtcc gtgatgatct cgttgcagat gtcaatgcac
     3481 tcgttgcaga tgtaaacggt ggggccggct atgagcttct tgacctcgtt ctgcgacttg
     3541 ccgcagaagg agcagcgcaa cgtgtcatcg gatcggcgta ccataagttt ttagagggtg
     3601 gcttcgggct gtcgccccgc cctcgaagga gggcagggcc ggggaacttc gtcggcgcgc
     3661 gccgcgccgg ggaacctgaa cgccggggcc ggggggcgac cccggcccgt aatttatcac
     3721 aaaaccgtcc gcgcggggca atcgggggct cgcgagggtt agccccggcc gtcgggccgt
     3781 cgcgccgagg gcgcggcgcc gcgggagtca aacgctcact ggcggtgggt gatgacctcg
     3841 tctatgaggc cgtactcctt ggcctgcgcg gccgacatga tgcggtcgcg ctcaacgtcc
     3901 ttctcgatga catcgaaggg ctggcccgtg tggcgcgcga gtatctgcga ggtcagctcg
     3961 cgcatcctta tgatctcctc tgcctgaatc ttgatgtcgg acgcctggcc gccgatgccg
     4021 cccgcgacgt gcggctggtg gatgagtatg cgcgagttgg gcagggcgaa gcgcttgccc
     4081 ttggcgccgg ccgccaggag cagcgccgcg aacgacgcgc actggcccag gcatatcgtc
     4141 acaacgtccg ggcgtatgaa ctgcatcgtg tcgtatatcg ccatccccgc ggtgatggag
     4201 ccgcccgggc tgttgacgta gaggttgatg tccttctcgg ggtcttcggc ttcgaggaag
     4261 agcagttgcg cgacgatgag gttggcgacc gtgtcgtcaa tcggcgtgcc gaggaagacg
     4321 atgttgtcgc gcagcaggcg cgagtaaacg tccgagtagc gctcgccgcg cggcgtctgc
     4381 tcgaagaccg tggggttcgg gatgtactgc cgcggcgtct gcataagctc ttcgactaga
     4441 ctgggaatgc gaatcatgta aaacctctca cgggaaagtt gcccggcgcg cggccctaaa
     4501 ccgaaattgg agacctgaaa ctccaaactc tcatttgaaa tttcaaatct ccaaatgttg
     4561 ttctctctcg gccgcggcgg ccctcagccc tgctcggcgc ccgcgccgcc ttcttcttcg
     4621 gcgtcgccct gcccctcgtc gcgccactcc tcttcgcgta tgacggcgtg cttgacgagc
     4681 aagtcgagcg ccttgcggtt gcgcaatctg tcggcgatgc tacgttcgcc tccctgcttt
     4741 gtcaaggcag cgcgcacctg ctctacgctc tgccgcgaag agtctgccat cagttgaatc
     4801 tcggcctcga cctcctcgtc cgtgacctct atcttctcgg cctcggcgat gcgctccagc
     4861 agcatcgagc cgcgaaggtc agcgcccgcg cgctcgcgca caacgtcgcg catggcctcc
     4921 cagttcacgt cggccgagcg cgggtcaatg ccgcgccgca tcatgtcgcg cagcgtggcc
     4981 tggaacatct cgccggcctg gtatgagacg agcgtctcgg ggacttcaaa ctggtggctc
     5041 tccagcagct tgtccagaag ctccccgcgc aggcggtgct ccgactcctg ctccgaactc
     5101 ttcgtcaggt tctcgcgcac gcgctcgcgc agctgctcga ccgtcgtgac ctcttcctcg
     5161 cccaggctcc gcacccactc gtcgtcgagc gcgggcagtt ccttgcggcg cacggccgtg
     5221 accgtcgtcg tgtactccac ggtcttgccc gcgagcccct tcgagctgaa gtcctcgggg
     5281 taggtgaccg tgaaggtctt ggcctcgtcg gggcgcacgc ccgtcaactg ctccgtgaag
     5341 acaggcagga cgccttcgcc gccgaggacg atgtccacgt ccgatgcgtt tatgtcttcg
     5401 tcggacggcg ggtcgaggta gcggccctgt atgtcaaccg tgacggtgtc gccctcctcg
     5461 gaggcgcggt cttcgacggg ctgtagagag gccgaagcct cgagtaggtt ctttatgact
     5521 tcctcgaccg actcgtccgt gacggggcgc ttgcggcgcg cggcctccaa tcccttgtac
     5581 tcgccgagcg agacttcggg cagcacctct acgtgcgcgt ggagcgagag gggctcgcgg
     5641 ccgaagtcgt caaggccctc gccctcgagg tgaacgtcgg gctggccgag cacggtcagg
     5701 ccgctctcgc gtatggcttg ctcgacggcc tgcggcacga gccgctgcaa aacgtcggag
     5761 cgtatctcct tcttgtagcg cgtgcggacg accgccagcg gcgcgtggcc cttgcggaag
     5821 cccggcaccg tcgcggcgcg cgcgtactcc tgcgccacgc gctcggcctc ggcgcgcaag
     5881 tcctccggct ccagctctat ctttatctcc ctgcgcgtct gcgagacctc gacaatttcc
     5941 gtcttcatca cacacccgtc ctttggttta acgatgaacg cggaacgagg aataaaaact
     6001 cgttccgcgt tccgctctgt tcgattaatg ccgggggcgg gactcgaacc cgcacgcctt
     6061 tcggcaaagg ctcctaagac cttcgcggct gccaattacg ccaccccggc cggcgtagtc
     6121 agaacgtgcg agattaaaag attgacgctt gaaagacaag cggcgcgccc cgcgggaggc
     6181 gcgccgctgt gcgtcgggct caatttaagt gttacctgct gccgcgtctc ctgcgccgta
     6241 agacgaaggc gggagggacg acgatgaaga ggccgagcca gccgaagccc gtgccgaaga
     6301 ggcgcgccag cgcgccgagc caagaggcgc ctgattgcgc gctcttgccg gcggtgggct
     6361 ggcccggctc gtccgtgacg gtgtagagac ggccgtcgcg caggtacatg cggcgcagtt
     6421 cttcgaggtt gaaggggcgc gcgcctcggc gcccgaagac ggcgacctgg ttgccgctct
     6481 cgtcaacgcc gcggtcgcgc ctgtagccct cggagacctg aacggcaggc cccttcgtcg
     6541 ggtagtgggc gatgacgctc ggggcgaggc gcgggctgta gccgagattg ccggggacgc
     6601 tgttcgggtt cgtcaactcc acgaccttca ggccgttcct gccgtcggcg acgtaggcga
     6661 ccaggctcac gttcatcatg ccggccttca cgtcgcgcgc gtcgttgaga cggcccccgt
     6721 cgttgaagga ctggtccagg cgcggctgct cgggccgctc gatgtcaacg agggcgaggc
     6781 cgtccgcgcc ggctgccacg agcgcgtatg tgcgcacgag gtagatacct cgcgcgtcgc
     6841 cgagccgcac cgtggcccct tcgaccgggc gcggccgctc gaggtcggta acgtccaaga
     6901 ccttcaggcc gtcggcgtcc gtgacgaagc agtagcggaa ctgcacggcg agcgagcgcg
     6961 ggtcacgcag gggcgaagtc acctcgccca cccagcgcgg cgcggcgggg tctgcgacgc
     7021 tcactatctg gagcgcgcgg tcggtcagta tgtaaacgta gttgccgacg acgttgatgc
     7081 tgcgcgcgcc ggtcaggcgg ccctcggggt tgtacgtggc cgcgcgcttt aagtggttat
     7141 tcgtcgggac gccgtcggtg agcgtcgtta tgtcaacggt gacgagcccc tcggcgcggt
     7201 cggctacgaa ggcgtagccg tagagcggcg cgaggggctg ctcctcgttc agcacgagcc
     7261 agcgccgctg gtcttcggtc tgaccggggt tgcgcttcgg gtcgagcggc gcgggtgagc
     7321 cgactgcgac gccgaccgcg gccttcgtgt caaccgtgtg cttctgcccg agcgaagaga
     7381 aggtcgagat ggttatgcgc tggctgaagc ccttgttggc tacgttggcg atgtcataga
     7441 cgacgagccc gtcgtcgccc gcggcgctca ggaggaactc gccgtacatc tgaacctggt
     7501 tcgactcctt cgagcggtgc gcgtagttct cctgaaggcg cccgccgcgc gccacgtgct
     7561 tcgcgtgcca gtcggggtag gcgagctggt gcatgtggcc gccgattacg gcctgcggct
     7621 cggtcagctc ggcgacgaca gtggcggaga gccccgactt gccctcggca acgtaggcga
     7681 agcggcccat gaagttgacg tagttcgtgc cgagcatcag cacggacgag agccacgcgt
     7741 tgttgtcgtt ggccttcgac acgtggcagt cagagcactc cttcgtctca gtcttgcgga
     7801 ctgtgtgcgg cgggtgcgtg ttgaaggcgt tgccgttaaa acccgccgaa gagatggtcg
     7861 gcgcgtggtt gatgacgttc tcgcggttgg cgttcgtcac gctgaaggtg acggccgacg
     7921 aagagcgcac cggcatcacc ttgtgctcct gcacggagcc gtctatgccg agcatgtagc
     7981 cgtcgctgcg cagcacctgc gggttgtaag agggatagac ctgcgtctcg tcgccctcgg
     8041 agtggagcat gggctttttg gtgttcacgc tcgcggagag gtggcagccc cagcagttcg
     8101 ttgtccacga ggagtggcag gagacgcagg agacgcgcga gttgtcgtgc gcgagctgct
     8161 tcgcgtcggc ggggactgcg ccccacgtct cgttgtcgcg caggatggtt ttcgcgcgcg
     8221 cggacttcgg gttgaagcgc gggttgccgg gagtgaccga gtccatcacc tgcggcacct
     8281 cccactccat tatcttgccg gtcttcgggt cgttctgcgt gaccatcgag cgctggaaga
     8341 gcttcccctg ccgctcgacg aagcgcgcgc ggttgaacgg cattcggcgc gcgggctggt
     8401 tcatggagtt gccgccctcg ggcgcgccga agcctgacgt gcgtagctgc gagagcttga
     8461 cgcgctcgcg cgccgtgccg tggcagtcct cgcaggctat ctcgatgacg gcgcggcggt
     8521 cgccgtagag cttgccggtg ccgtggttgt cctgcgagta gtggcagtca acgcagtgca
     8581 tgccgcgctc aaggtgaatg tccttgaggt ggacggcctt gccctcgccg ccggccttgc
     8641 cgcggaaaag ctccgggtcg tcgtaaggga ttactttacc gtccttgtcc aggtactcgc
     8701 ccttgcggtt gagcttatag acgcggcgga acatccagcc gtggccgtgg tagtcggaga
     8761 tttgcatctt cttcatctcc gagttgagcc ggctcgcctc gaacaggaac tccggcttgc
     8821 cccaaaggcc gcgcgcggcg gcctcctcgg ggttgaagtg tccggccttg tccagctctt
     8881 cgggcgtggg gttgtgctgc ttcttgggcc agaggtactc gccgtcggtc tgctggtccc
     8941 accacatgta gccgaggaag gtgtttagga acccgttgcc gttgtggacg tggcaggtga
     9001 tgcactggct cgaaggtatt gacttggtga acttgtgctc gatggggtgg cccttctcgg
     9061 ccttgttgat ggtcgggtcc gggttgtcgg gcgccgtgcg gccgctgttg ccgtacttcg
     9121 cccacgggcc ggagttgtac tcggagcggt cgttggcata gacgacgtgg cacgcggcgc
     9181 agcccgactg ccggtagtcg cccggcgcgt tgttcgtccc catgaagaac atgacggggt
     9241 cgttgaggcg caccttctgc gcgccgagga tgacggggtc aatggcggcc tgcgtgccgt
     9301 agccgcggtt ggagaaggta acgtcgggct ggcccggcac gtcc
//
LOCUS       DASPKR010000603         4716 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1126600, whole genome shotgun sequence.
ACCESSION   DASPKR010000603 DASPKR010000000
VERSION     DASPKR010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4716)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4716
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1126600"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..972
                     /locus_tag="VD968_16150"
     CDS             58..972
                     /locus_tag="VD968_16150"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HYE15974.1"
                     /translation="MKNKGRALGLLLCLLLSGPARAQLDRHGHLLEVRPAAAPVQAHA
                     AVAPAELKIVSYNIRWRGGEELKELVEILRSDSEVGGAAIVGLQEVDRAKKRTKNEHT
                     GRLIAESLGMHMAWAAPPPARDGEEEETGVALLSPFPMTDVERIVLPHEGPNKRRRVA
                     VGATVHVGEVQVRAYSVHAETRMPLKKKVEHWAAVLEDLKKYPHVKRAVVVGDFNTIK
                     GKDVRAARRLFTDAGFTTPFPDDRSTWKTFIVKLKLDWLWLRGFEAGDFGIDKKVGFS
                     DHYPLWAKVRVGPKDGAPPAEPSSAGRR"
     gene            complement(986..2251)
                     /locus_tag="VD968_16155"
     CDS             complement(986..2251)
                     /locus_tag="VD968_16155"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HYE15975.1"
                     /translation="MKRALLLAVASLALLASARPSAARQAEVSNLSAEERAFVAAKIY
                     SAVNTYFAHWQAVPGLDFDAEFKKYLARATRAESRLDFDLATMELVASLRNGHTAFYD
                     RAMTTQGPWKWRGLWVTQVGGRWVVAGSQTEGVRRGDEIVAVDGKPVEEFYKENRKYL
                     AASDERSARRRLFFQPFLFPEKFTLTLDGGRRVAIDRRAGTGEPPRQETEGRWLKKGE
                     LAYLKIPSFGEPRFEERALELVRQFAAAKALVIDVRGNGGGSTPSRLVKAFMERPYRW
                     WAEATPQTLAVLRYRREYHTNTMMTWGGEVMQPSEPLFKGRLVLLADAGCASACEDFV
                     MPFKDNGRAAVLGERTAGSTGQPYVHDFGNGMVIVVGSIRTFFPDGSPFEGVGIAPDI
                     EAPATLEDLKSGADSALERAIEEAEKPAR"
     gene            complement(2266..4332)
                     /locus_tag="VD968_16160"
     CDS             complement(2266..4332)
                     /locus_tag="VD968_16160"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HYE15976.1"
                     /translation="MHKRTHESLKGLAAAALLACSLGAPARAQQQTQAPPPYTPAPSA
                     NTPPAQGAPAQSPQTASPAQSQAQQSQNPAASQPSAAPAAPFSGSLVGPAQLQTQQQP
                     AAGAQQQITSPPAVRQPGRESVPAPAPDELRLDVPSVAPEFRSAPAPFPILERVGVDM
                     GEQRPLTMREAIELALANNKDIEVARQNVRVAEFDLRAARGVYDPRFATNSYYERSEQ
                     PVASFLSGSSTGAVTQSGFYSASSVQGLTPKFGGGYRVDFVTNRITTDNQFAALNPQY
                     PTALTFNYTQPILRGRSFDQNRRVIEIARKNLSLTDSQFRQRAIETITNVQRAYWDLV
                     FALRNLQVQRDAVRDARAQLEHNRRLVSEGVLAPIDVVAAEAQVSGFEQSVYTALDDV
                     GRAENALKNLIAEDRESPLWSVAIVPTDDVAQAPPGVRLEDAMGAALRSRPELQSSDV
                     AREINEVEQRFAREQARPQVDLVASYGAVGLAGSRNESGANPFASTSALRDQINALTA
                     TVNRLDPGANLPLLPGVTQPTIPDVLVGGAGQSLTNLAANRYTSFRVGVQVNLPFRNT
                     TAEAQLGRTLVEAERIRTQREQLEQLIQVDVRNALQQVRTAESRLRAAASARSASEQQ
                     YASEQRRLDAGQSTVFLVLERQTALAASRGNELRAQTELNKALAELQRATGNALEQNR
                     VEIVLR"
     gene            complement(4345..>4716)
                     /locus_tag="VD968_16165"
     CDS             complement(4345..>4716)
                     /locus_tag="VD968_16165"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYE15977.1"
                     /translation="IDHTNELRSQGMERLEAIVQANRDRLRPILMTTVALVAGMMPLV
                     VSTGPGSGTNRSIGVLVVGGQTLCLLLTLLAVPVFYSLFDDIGHSRVWGRIGSWAAAP
                     FAWARRRAATAAQSFFGMFGR"
BASE COUNT          712 a         1591 c         1668 g          745 t
ORIGIN      
        1 cgcgcgccgc gcgattcctc gcgggcgacg ccccgttcac gaaggagaac aacagccatg
       61 aagaataaag gccgcgcgct cgggctcctg ctctgcctcc tgctctccgg cccggcgcgc
      121 gcgcagttgg acaggcacgg ccacctgctc gaagtgcggc ccgcggcggc gcccgttcag
      181 gcgcacgcgg cggtcgcccc agccgagctg aagatcgtct cctacaacat acgctggcgc
      241 ggcggagagg agctgaagga gctggtggag attctgcgca gcgacagcga ggtcggtggc
      301 gcggccatcg tcggccttca ggaggttgac cgcgccaaga agcgcacgaa gaacgagcac
      361 acgggccgtc tcatagccga atccctcggg atgcacatgg catgggccgc gccgccgccc
      421 gcgcgcgacg gcgaggagga ggagacgggc gtggcgctct tgagcccatt ccccatgacg
      481 gacgttgagc gcatcgtgct cccgcacgag gggccgaaca agcgcaggcg cgtcgccgtc
      541 ggcgcgacag tccacgtggg cgaagtgcag gtgcgggcct actcggttca cgccgagacg
      601 cgcatgccgc tcaagaagaa ggtcgagcac tgggcggccg tgctcgaaga cctgaagaag
      661 tacccgcacg tcaaacgcgc cgtcgtcgtc ggcgacttca ataccatcaa gggcaaggac
      721 gtgcgcgccg cccgccgcct cttcaccgac gcgggcttca cgacgccctt ccccgacgac
      781 cgctcaacgt ggaagacctt catcgtcaag ctcaagctcg actggctctg gctgcgcggc
      841 ttcgaggccg gcgacttcgg catagacaag aaggtgggtt tctcagacca ctacccgctc
      901 tgggcgaagg tgagggtcgg gccgaaagac ggagcgccgc ccgccgagcc gtcctcggcg
      961 gggcggcgct gagttggtcg cggccttagc gcgcgggctt ttcggcctct tcgattgcgc
     1021 gctcgagggc ggagtcggcg cccgacttta aatcttcgag cgtcgcgggg gcttcgatgt
     1081 cgggggctat gccgacgccc tcgaacggcg agccgtcggg gaagaaggtt ctgatgctgc
     1141 cgacgacgat gaccatgccg ttgccgaaat cgtgaacata cggctgcccc gtgctcccgg
     1201 ccgtgcgctc gcccaagacg gcggcgcggc cgttgtcctt gaagggcatg acgaagtcct
     1261 cgcaggccga cgcgcagccg gcgtcggcca agagcacgag ccggcccttg aagaggggct
     1321 cggagggctg catcacttcc ccgccccacg tcatcatcgt gttcgtgtgg tactcgcgcc
     1381 tgtagcggag cacggcgagc gtctgcggcg tcgcctcggc ccaccagcgg tacggcctct
     1441 ccataaaggc cttcaccagc cgcgacggcg tgctgccgcc tccgttcccg cgcacgtcaa
     1501 tcacgagcgc cttcgccgcc gcgaactgcc tgaccagctc cagcgcgcgc tcctcgaagc
     1561 gcggctcgcc gaacgagggg attttcaggt aggccagttc gcccttcttc agccatcgcc
     1621 cctccgtctc ctgccgcggc ggctcgcccg tcccggcgcg cctgtcgatc gcgacgcgcc
     1681 ggccgccgtc gagcgtgagc gtgaactttt cggggaagag gaagggctgg aagaagaggc
     1741 gtcggcgggc cgagcgctcg tccgaggccg cgaggtactt ccggttctcc ttgtaaaact
     1801 cctcgacggg cttgccgtcc acggccacta tctcgtcgcc gcgccttacg ccctccgtct
     1861 ggctgcccgc gacgacccag cggccgccga cttgagtcac ccacagcccg cgccacttcc
     1921 aggggccttg cgtcgtcatc gcgcggtcgt agaaggccgt gtggccgttg cgcagggatg
     1981 cgactagctc catcgtcgcg aggtcgaagt ccagccggct ctctgccctc gtagcgcggg
     2041 cgaggtactt tttgaactcg gcgtcgaagt cgaggccggg gacggcctgc cagtgcgcga
     2101 agtatgtgtt gacggccgag tagattttcg cggcgacgaa ggcgcgctcc tccgcgctca
     2161 agttagagac ttctgcctgc cgcgccgccg aaggccgcgc ggaggcgagc agagccagcg
     2221 acgcgaccgc gagaagaagt gctcgtttca attccgcctc ccgacctacc tgagaactat
     2281 ctccacgcgg ttctgctcaa gcgcgttgcc cgtggcgcgc tgtagctcgg cgagcgcctt
     2341 gttcaattcc gtctgggcgc gtagctcgtt gccgcgggac gcggcgagcg cggtctgccg
     2401 ttcgaggacg aggaagaccg tggactggcc ggcgtcgagg cgccgctgct cggaggcgta
     2461 ctgctgctcg gaggcggagc gggccgaggc cgcggcgcgc aggcgcgact cggccgtcct
     2521 cacctgctgc aaggcgttgc gcacgtcaac ctgtatgagc tgctccaact gctcgcgctg
     2581 cgtgcgtatg cgctcggcct cgacgagcgt gcgccccagc tgcgcctcgg ccgtcgtgtt
     2641 gcggaacggc aggttcacct gcacgccgac gcggaagctc gtgtagcgat tggccgcgag
     2701 gttcgtgagc gactggcccg cgccgccgac gagcacgtcg gggatggtcg gctgcgtcac
     2761 tccggggagg agcggcaggt tcgcgccggg gtcaagacgg ttgacggtag ccgtcagcgc
     2821 gtttatctgg tcgcgcagcg cgctcgtcga ggcgaagggg ttcgcgcccg actcgttgcg
     2881 cgagccggcc aagcccaccg ccccgtatga ggcgacaagg tcaacctgcg ggcgcgcctg
     2941 ctcgcgcgcg aagcgctgct cgacctcgtt tatctcgcgc gcgacgtccg aagactgtag
     3001 ctcgggccgg ctcctgagcg ccgcgcccat ggcgtcttcg agccgcacgc cgggcggcgc
     3061 ctgcgccacg tcgtccgtgg ggacgattgc gacgctccag agcggcgact cgcggtcctc
     3121 ggctatcaag ttcttaagcg cgttctcggc gcggccgacg tcgtcgagcg ccgtatagac
     3181 gctctgctcg aagccggaga cctgcgcctc ggccgccacc acgtcaatcg gcgcgagcac
     3241 gccttccgag acgagccgcc ggttgtgctc tagctgcgcg cgcgcgtcgc gcacggcgtc
     3301 gcgctgaacc tgtaggttcc gcagggcgaa gaccaagtcc cagtaggcgc gctgaacgtt
     3361 cgtgatggtc tcgatggcgc gctggcggaa ctgcgagtcg gtcaggctta aattcttccg
     3421 cgctatctca atcacgcggc ggttctggtc gaacgagcgg ccccgcagga ttggctgcgt
     3481 gtagttgaag gtgagcgccg tcgggtactg agggttgagg gccgcgaact ggttgtcggt
     3541 cgtgatgcgg ttcgtgacga agtccacgcg gtagccgccg ccgaacttcg gcgttagccc
     3601 ctgcacggaa gaggcgctgt agaagccgga ctgagtcacg gcgccggtgg agcttcccga
     3661 gaggaagctg gcgacgggct gctcgctgcg ctcgtagtag gagttggtag cgaacctcgg
     3721 gtcatagacg ccgcgcgcgg cgcgcaagtc gaactcggcg acgcgcacgt tctgccgcgc
     3781 gacctctatg tccttgttgt tcgcaagcgc aagttctatc gcctcgcgca tagtgagcgg
     3841 gcgctgctcg cccatgtcaa cgcctacgcg ctcgagtatg gggaacggcg cgggcgccga
     3901 gcggaactcg ggcgcgaccg aaggcacgtc cagcctcaac tcgtcgggcg cgggggcggg
     3961 aacgctctcg cgcccaggct gtctcacggc gggcggcgac gtaatctgct gctgcgcgcc
     4021 cgcggccggc tgctgttgcg tctgcaactg cgccggcccg acgagcgagc ccgagaaggg
     4081 cgcggccggc gcggccgaag gctgagacgc cgcggggttc tgcgactgct gcgcctgcga
     4141 ctgcgcgggc gaggccgtct gcggcgattg cgcgggcgcg ccttgcgccg ggggcgtgtt
     4201 agccgaaggc gcgggcgtgt agggcggggg cgcctgagtc tgctgctgcg cacgcgcggg
     4261 cgcgcccagc gagcacgcga ggagcgccgc agccgccagt cccttcaacg attcatgagt
     4321 gcgtttgtgc ataacccttg ttctttacct gccgaacatc ccgaagaacg actgcgcggc
     4381 cgtggcggcg cggcggcgcg cccacgcgaa gggcgcggcg gcccaggagc ctatgcggcc
     4441 ccagacgcgg ctgtggccga tgtcgtcgaa gagcgagtag aagacgggga cggcgagcag
     4501 cgtgagcagc aggcagagcg tctgcccgcc gacgacgagg acgcctatcg agcggttcgt
     4561 cccggagccc ggccccgtag agaccaccag cggcatcatg ccggccacga gcgccaccgt
     4621 cgtcataagg atcggccgca ggcggtcgcg gttcgcctgc acgattgcct cgaggcgctc
     4681 catcccctgc gaccgcagct cgttagtgtg gtctat
//
LOCUS       DASPKR010000604         4699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1771798, whole genome shotgun sequence.
ACCESSION   DASPKR010000604 DASPKR010000000
VERSION     DASPKR010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4699)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4699
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1771798"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /locus_tag="VD968_16170"
     CDS             <1..253
                     /locus_tag="VD968_16170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15978.1"
                     /translation="SDLDPSSVIVEPRVKPNATFSEEVWNLSITATGERGAIREQNGD
                     GSGAVNHYSGLELQFLGRERADSLARALQHAIKLCGGKP"
     gene            complement(342..1760)
                     /locus_tag="VD968_16175"
     CDS             complement(342..1760)
                     /locus_tag="VD968_16175"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE15979.1"
                     /translation="MRLLTALLSAVAAAAGAAVAQQSDLTSSAGVFVDPPSARRRAPR
                     TPSAAPARSYATRRRAARPAATPAPGRRAPAVTAESLNAKAEAAIAAGRFAEAVEALK
                     EAVRLKPDLAGANYNLGFAHFSLGNFTEAVAPLQKASQLDPRDEDAFYHLGAAYAKLG
                     RHAEAASAYEAASRLDTKDAELFYALGVEQERAGNSERAVAAFREALRLKPDYAEAQF
                     DLADALYAKADYAEAAKAYEQAARLNPLSAEAHSNLGDAYRALKRFPEAAAAYKEAAR
                     INPSDADVQYDLGYSLGRAARWQEAASAFEQAIRLKPDHVDAHVNLAWVYNNSNRYQE
                     SERVLRQALALKPDAPAAHFNLGMAYSRWGQSGKMKDAEKKSLFQRAVGSFREAIRLR
                     PDWAEAHNNMGVALGISGLFKEAVAAHQEALRIKPDYHFALFNLAYAYRKAGDKKKAM
                     ESYERLKAASPDLAAKLYPLIK"
     gene            complement(1825..3084)
                     /locus_tag="VD968_16180"
     CDS             complement(1825..3084)
                     /locus_tag="VD968_16180"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HYE15980.1"
                     /translation="MPYLSAPARRPLALAACLLLLTSLTAFAADTEYTGKFEPDLVAE
                     TEDLEAVTFKPIGDLSKLKFAEAPEPGDHVTGARLYHPPQDKSSLVAILVEPEGERPY
                     LYVDLDGDKTLAASERFELKRGEDDNPYLLETRVSLPLQPGTPFQSFPLFVQYFKDVQ
                     WDELKEGERLVMQSKTAFAKGYVDLAGKRTLVQYGFRPGSKKLSATSGWVGVDGDGDG
                     QIDMDRFSPEAADAQDETVVFRAGDLYVSTKKVDVEKNLIVLRSHPASDYKRVELKVG
                     GELPDFEFTDFNGKKRKFSEFRGKYVLLDFWATWCGPCRAELPYLKAAYTRYQDRGFE
                     ILGLNGDFDIFPVKAWLKRNGLNWTQATPDSIKGLKRNYRIDRIPTTILVGPDGKVLS
                     LGQRKKGQPSLRGQELLKALDDILPAI"
     gene            complement(3265..>4699)
                     /locus_tag="VD968_16185"
     CDS             complement(3265..>4699)
                     /locus_tag="VD968_16185"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008234 - cysteine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HYE15981.1"
                     /translation="KIYTKINGESANTIFNFNSGADGYIINGDLESKPRFRLQPGKNV
                     VEIMAKATDGREYYASYVLLTKDRRSDEGAASDATVETVPVAAGGDRLPPAIYLTQPV
                     AAVRLTGESGSVRVSGLVVDETGEVASVTVNGQPARLAPATATRGLTVAATAGSAAEA
                     DSGAVKNPLEFDLTAQLAAGAPSLVVEARDRAGNLTRVTLPVRRREAAVSSAFKGRKF
                     ALVVGVSKYKYHDGGLRDLAFADVDARAVRDFLQQPEGGGFSPGDVTFLVNESATVEA
                     VRAALNSFLPKAGSGDLVLIFIAGHGGPDPYAPQNLYFMLHDTKLADMPSTALPMTEL
                     QEALDHKARAERLIVFVDTCHSAGLSGESLVATRSVENNLINLYASKLFTETGRAVMT
                     SSDVNEVSREGSAWGGGHGIFTWALLEGLRGRADSNEDRFVTAGELFGYVRNRVRVET
                     GFRQNPRVLPGLNADLSLAFVKPKAGG"
BASE COUNT          702 a         1488 c         1687 g          822 t
ORIGIN      
        1 ctcggactta gacccgtcga gcgtcatcgt cgagccgcgc gtcaagccga acgcaacctt
       61 ctccgaggag gtctggaact tgagcatcac ggccacgggc gagcgcggcg ccatacgcga
      121 gcagaatggc gacggaagcg gcgccgtcaa ccactacagc ggcttggagc ttcagttcct
      181 gggcagagaa agggccgaca gcctcgcccg ggccctacag cacgccatca agctctgcgg
      241 cggcaagccc tgacggttgc gggttgcgga atagaaaagc cgagagggtt gacgacagcg
      301 cggctgtcgt caaccctctt tcttcattcc gtgacccgcg actacttgat gagcgggtag
      361 agcttggcgg cgaggtcggg gctcgcggcc ttgaggcgct cgtatgactc catagccttc
      421 ttcttgtcgc cggccttgcg gtaggcgtag gcgaggttga agagggcgaa gtgatagtcg
      481 ggctttatcc tcaaggcttc ctggtgcgcc gcgacggcct ccttgaagag gccggagatg
      541 ccgagggcga cgcccatgtt gttgtgcgcc tcggcccagt cgggcctgag gcgaatggcc
      601 tcgcggaagg agccgacggc gcgctggaag agtgacttct tctccgcgtc cttcattttg
      661 ccggactgcc cccagcggct gtaggccatc ccgaggttga agtgggcggc cggggcgtcg
      721 ggcttgagcg cgagcgcctg cctgagcacg cgctccgact cctggtagcg gttcgagttg
      781 ttatagaccc acgcgaggtt gacgtgcgcg tcaacgtggt cgggcttgag ccgtatggcc
      841 tgctcgaagg ccgaggcggc ctcctgccag cgcgcggcgc gcccgagcga gtagccgagg
      901 tcatactgta cgtcggcgtc gctggggttt atgcgggcgg cctccttgta ggccgcggcc
      961 gcctcgggga agcgcttgag cgcgcggtat gcgtcgccga ggttcgagtg cgcctcggcg
     1021 ctcaacgggt tcaggcgtgc ggcctgctcg taagccttcg ccgcctccgc gtagtcggcc
     1081 ttagcgtaca acgcgtctgc caggtcgaac tgcgcctcgg cgtagtcggg cttaagtcgc
     1141 agtgcctcgc ggaaggctgc gacggcgcgc tcggagttcc ccgcccgctc ttgctcgacg
     1201 ccgagcgcgt aaaagagctc ggcgtccttc gtgtcgaggc gcgaagcggc ctcgtaggcc
     1261 gaggccgcct cggcgtggcg gcctagtttc gcgtaggcgg cgccgaggtg gtagaaggcg
     1321 tcctcgtcgc gggggtcgag ctgcgaggct ttctgtagcg gcgcgaccgc ctcggtgaag
     1381 ttcccgagcg agaagtgcgc gaagccgagg ttgtagttcg cgccggccaa gtcaggcttg
     1441 agacgcacgg cctccttaag agcctcgacg gcctcggcga agcggcccgc ggcgattgcc
     1501 gcctcggcct tcgcgttgag cgactcggcc gtgactgccg gcgcgcgccg gccgggcgcg
     1561 ggcgtcgcgg ctgggcgcgc ggcccggcgc cgcgtcgcgt agctgcgcgc cggagccgcg
     1621 ctcggagtgc gaggcgcacg cctgcgcgcg ctcggcgggt caacgaagac gcccgcgctg
     1681 ctcgtcaaat cgctctgctg ggcgactgcc gcgcccgccg cggcggcgac ggccgacagc
     1741 agcgccgtta ataacctcaa ggcggtctgg cctcttttca tccttagcct ttcatggtct
     1801 cgggcgaacg gcgcccagcc cggctcagat ggccggcaag atgtcgtcga gcgccttgag
     1861 caactcctgc ccgcgcaggg acggctggcc cttcttgcgc tggccgagcg agagcacctt
     1921 gccgtcgggg ccgacgagta ttgttgtcgg gatgcggtct atgcggtagt tgcgcttgag
     1981 gcccttgatg ctgtcgggcg tcgcctgcgt ccagttcagg ccgttgcgct tgagccacgc
     2041 cttgacgggg aaaatgtcga agtcgccgtt gaggccgagt atctcgaagc ctctatcctg
     2101 gtagcgggtg taggcggcct tgaggtaagg aagctctgcg cggcacgggc cgcaccacgt
     2161 cgcccagaaa tcgagcagga cgtacttgcc gcggaactcc gagaacttcc gcttcttgcc
     2221 gttgaagtcc gtgaactcga agtcgggcag ctcgcccccg accttcaact cgacgcgctt
     2281 gtagtcagac gctgggtgcg agcgcagtac tatcaggttc ttctccacgt caaccttctt
     2341 ggtcgagacg tagaggtcgc cggcgcggaa gacaacggtc tcgtcctgcg cgtcggcggc
     2401 ctcgggcgag aagcgatcca tgtcaatctg gccgtcgccg tcgccgtcaa cgccgaccca
     2461 gccgctcgtc gcgctcagct tcttcgagcc ggggcggaag ccgtactgca cgagcgtcct
     2521 tttgccggcg aggtcaacgt agcctttggc gaaggccgtc ttcgactgca tcaccagccg
     2581 ctcgccctcc ttcagctcgt cccactgaac gtccttgaaa tattgaacga agagcgggaa
     2641 gctctggaag ggcgtgccgg gctgtagcgg gaggctcacg cgcgtttcca gaaggtaagg
     2701 gttatcgtct tcgccgcgct tcagctcgaa gcgctccgag gccgcgaggg tcttgtcgcc
     2761 gtcgaggtca acgtagagat aggggcgctc gccctcgggc tcgaccagta tggcgacgag
     2821 cgaggacttg tcctgcggcg ggtggtagag gcgcgcgccg gtgacatggt cgccgggctc
     2881 cggggcttcc gcgaacttga gcttggagag gtcgccgatg ggcttgaaag tgacggcttc
     2941 gaggtcttcg gtttcggcga ccaggtcggg ctcgaacttg cccgtgtact cggtgtcggc
     3001 ggcgaaggcc gtcaagctgg tcaggagcag gaggcatgcg gctagggcga gcgggcgccg
     3061 cgcgggggca gaaaggtaag gcataaactg acttctccga tttctttggc gcgctccggc
     3121 ggcagggctt tgcgctgctt gagcgtgcgc gaggtttaag ggagcggcga ttacgccggg
     3181 ggcggcgcgt gccttgaccc ggcgcgcgcg gggcatatct taaacgtgcg cacggccgcc
     3241 catcaagcgc cgagctatgc cgcgtcagcc gcctgccttc ggcttgacga aggcgagcga
     3301 gaggtctgcg ttgaggcccg gcagcacgcg cgggttctgg cggaagcctg tctcgacgcg
     3361 gacgcggttg cggacgtagc cgaacagctc gcccgccgtc acgaagcggt cttcgttcga
     3421 gtcggcccgg ccgcgcaggc cctcaagcag cgcccaagtg aatatgccgt ggccgccgcc
     3481 ccacgccgag ccctcgcgcg acacctcgtt cacgtccgag gaggtcatca ccgcccgccc
     3541 cgtctccgtg aagagcttcg aggcgtaaag gtttatcagg ttgttctcga cgctgcgcgt
     3601 ggcgacgagc gactcgccgc tcaggcccgc gctgtggcac gtgtcaacga agacgatcag
     3661 gcgctcggcg cgcgccttgt ggtcgagcgc ctcctgtagc tccgtcatcg gcagcgcagt
     3721 cgagggcatg tcggcgagct tcgtgtcgtg gagcatgaag taaaggttct gcggcgcgta
     3781 agggtccggg ccgccgtggc ccgcgatgaa gatgaggacg aggtcgcccg agccggcttt
     3841 gggcaggaaa gagttcagcg cggcgcgcac ggcctcgacg gtcgcgctct cgttcacgag
     3901 gaacgttacg tcgccgggcg agaagccgcc gccctcgggc tgttgcagga agtcgcggac
     3961 ggcgcgcgcg tcaacgtcgg cgaacgcgag gtcgcgcagg ccgccgtcgt ggtacttgta
     4021 cttcgacacg ccgacgacga gcgcgaactt ccggcccttg aaggctgagg agacggccgc
     4081 ctcgcggcgg cgcacgggca gcgtgacgcg cgtgaggttg ccggcccggt ctctggcctc
     4141 gacgacgagc gagggggcgc ccgccgcgag ttgcgcagtc agatcaaact caagagggtt
     4201 cttgacggcg ccgctgtcgg cctcggccgc cgagccggcc gtcgcggcga ccgtcaggcc
     4261 gcgcgtggcg gtcgccgggg cgagccgcgc cggctgcccg ttgactgtga cggaagcgac
     4321 ctcgcccgtc tcgtcaacga ccagccccga gacgcgtaca gagcccgact cgcccgtaag
     4381 gcgcacggcc gcgacgggct gcgtgagata gatggccggg gggagccggt cgccgcccgc
     4441 cgctacgggg acggtctcga cggtcgcgtc ggaggcggct ccctcgtccg acctgcggtc
     4501 tttcgtaagg agcacgtagg aggcgtaata ctcgcgcccg tctgtcgcct tcgccataat
     4561 ctcgacgacg ttcttgccgg gctgcaagcg gaagcgcggc ttgctttcga ggtcgccgtt
     4621 gatgatgtag ccgtcggcgc cggagttgaa gttgaagatg gtgttggcgg actcgccgtt
     4681 aatcttggtg taaatcttg
//
LOCUS       DASPKR010000605         8194 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1127187, whole genome shotgun sequence.
ACCESSION   DASPKR010000605 DASPKR010000000
VERSION     DASPKR010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8194)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8194
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1127187"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1686)
                     /locus_tag="VD968_16190"
     CDS             complement(<1..1686)
                     /locus_tag="VD968_16190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15982.1"
                     /translation="MTLAVLFLVGAALAGAALVRRALRGLPGGAEQLAWGTVLGWALS
                     ALCVYAAARWQGRLTHAQVVWAAALAWLAAAALSLPELRRLRGGGWRLKITPRRHAGL
                     ALVLVVFAPVLWHLFSTHMLPREAGGVYSGGSSWYDMALHAALASSFLYGENFPPVYT
                     PLPPEPLHYPFVPDFQTAILMRTGVGMSAALVWTALPLALATVAIFYSAALRVARSQR
                     AAALATFLFLLNGGLGFLYFFSDWRASGRTLTDFWNSNNVNYANAWERGIHWTNLVAD
                     TMLPQRTSLYGLPLGLMVFTLFAVVWRRAGGDARPSESRLLLAAGLMTGLLPLFHPHT
                     YAAVVVVGLLLSALRPRRAWFAFWAPALLLAAPRLLAVAVHAAEGGFVRLQPGWMGQG
                     EASWPLYMLRNFGLALLLAGLAWLAAPRHWRVFYLAFAGLFALSLILMVTPNAFDNIK
                     LMHYWHAANCVLVGSWLARLWAARRRPPLHAFALRAAVAVVVLASVASGLLALRSEAR
                     ARARLFDDEEIAAADFARERTAPRSLFLAAPAINQPVLCLAGRPVLRGPTPWLW"
     gene            complement(1733..4408)
                     /locus_tag="VD968_16195"
     CDS             complement(1733..4408)
                     /locus_tag="VD968_16195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15983.1"
                     /translation="MATAPAAEERGTETEEVRPGGGLAARLAGLARAAFVRELLIFLA
                     FCLLTALLTWPYVTRMRDAVADPGDPYLVAWILWWDYHQTFTDPLNLFHSNVFYPYRY
                     TLAFSEHNYGLALPFFPLFALGLRPLTVHAVALYFGFALCGYGAFRLARTLTGSTGAA
                     WVAGIIFAFIPYRFHLLSHLPYLFSPWVPLLFEAFVLFARERSRRRAAWLGFALFATG
                     LTTVSWFALSLVPLALSAAILLTRHGLWRERAFWRRGAAAAGGAALGLLPFMLPYYIA
                     SKLYGFKRNVWEIQANSAWPVHWLSAENRNKFWHGMGEAIPGGGQFKLFPGLLPVLLS
                     LAAVLIVEPARAITRSLASAAAAKAKWVGRLDTLIVVSLVLSVFAVGFHGTAFWWGVF
                     NYVTSERVLAVLTVAVIARLCLAYPPFFLRLSEHENLVETIRSPRRTDAFWLGAVWCV
                     VGFCYSLGWNFFFYRILYDLIPLFRSMRVPTRGAMICYMGLAVLAGLGTVRLAELIRE
                     RRPRVREWAVFAAACALLLIELNGAPLKFMRGDVFPDSVTLRLKETPMTGGIVALPAG
                     GDYNHRHILRAADHAKPLVNGTSGFNPPYEDQIEWLTRGGTIQLQFMELLEKIPASYL
                     VVQTHLVPPERRADYETFLARGVASGRLRFINRFDGRDDLYAVTRNEPDAQSEAALPF
                     GLSIREWAALVEDDPVNMLGQYQEASQTLFRLHVAATGRLPRYAEFLNDLKAVGSGVI
                     AGFEEDDRRLEANMRELAESLTRRPDFREAFAGLDEAQFVDRLLANAGLQTGDAERAA
                     LVEALRSGAVTRGGALLKVAEDPRFVERERNRSLVVLHYFGYFRRNPDDPPDTGMFGV
                     NFWVEDLERNNNPSKLSAAFMNSIEYQQKKAADKK"
     gene            4626..5561
                     /locus_tag="VD968_16200"
     CDS             4626..5561
                     /locus_tag="VD968_16200"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYE15984.1"
                     /translation="MYKNRRIAVVVPAYNEARHVGDVLRGVPEYVDHVLAVDDCSADD
                     TFEVMKAVGDARVEALRTPENQGVGGATLAGYRRALELGCDVAVKMDGDGQMSPEHLH
                     LLLDALVEQGYDYAKGNRFLAGESLAQMPRHRLFGNVVLTFLNKLASGYWHVFDPQNG
                     YTAVTAEALRRLDFGAIHRRYFFENDMLIALNFHNARVRDVAIPARYGDEQSDLNPFK
                     VGVTFPLLFLPRLWRRVYQKYVLRDFSPIALFLFAGLLLFAWGVIFGAYHWAKSVWTG
                     HATPTGTIMLSVLPLILGFQLILEAVVLDIRETPR"
     gene            5558..7786
                     /locus_tag="VD968_16205"
     CDS             5558..7786
                     /locus_tag="VD968_16205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15985.1"
                     /translation="MRARGLLGKVELGDVMLFPYAVVFARQCFWAVGNDYVAWALTLA
                     AASAVWLAHLYAKPEAEEKTPRVFWLVVGLPLLFVYLLRAPLPDLSFDVLNHRLIQGE
                     RALRGAQLMPADFFPTIFPFNPASDMLTGLFRHLLGYRLGTVVNLLALLWAGTVLEKL
                     IRPFVGGAALRTLCVLLVLFTEHVLFEINNYMVDLLALPLALEALRLALRYDESEHKR
                     RDLVFSALLLGACVALKLTNAAMVLPVLLVFAVRIFSRRISAATVVLVLVSGLAFLLP
                     LLPHAIYIYAETGSPFFPLYNKLFASPLWPHMNPYDGRWGPRDWPETLLWPFLIVSKP
                     ERLSELNVYSGRITLGVVAGALSLVLPRIGARARLLGLATLSGALLWSATSGYIRYAL
                     FLELLAGLLFVNLARYAYDRAARLPRPARIAAAALPVALLSAQCALSWSYVTRTEWSK
                     RLTLLDDPGAWRKEARWLWRDRDLMKFQTEEARSLFARVDAWVVSGVKTNGVEVLLRP
                     DVPMLAVNNLEYFDRPDSRRRFARALETLRGKRIYSLSLTEDLNSSLEYLRRRRLVAG
                     EVKTFTLPFFSARTQFHVALIEVGLPPPREVPRRAPDSPEASEATAPLDDEAYQAGLG
                     VAGLPSVMRPGQRATITVTVKNMSEFVWPSRGRKDYTYLITVGDTWLASDGETLVNNM
                     DGRNTLPRDLWPGEEATVPLDITAPKEPGEYVLEIDLVQEGITFFRDKGSRPLRAAVK
                     VE"
     gene            7832..>8194
                     /locus_tag="VD968_16210"
     CDS             7832..>8194
                     /locus_tag="VD968_16210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15986.1"
                     /translation="MSLRNLARGCALSLALLVAACGGREAGNTSAGATAEPAGPKPPA
                     ALPDNGFKAQITLPDPPTKLRAGQKQTVQVKIKNASDVQWYARGGELNTNPDNRFYLA
                     AGNRWLKGDGGEMVTNMDG"
BASE COUNT         1397 a         2773 c         2795 g         1229 t
ORIGIN      
        1 ccaaagccac ggggtcggcc cccgcaggac ggggcggccc gcgaggcata gcacgggctg
       61 gttgatggcg ggcgcggcga ggaagagaga gcgcggcgcg gttcgctcgc gcgcgaagtc
      121 ggccgcggca atctcttcgt cgtcgaagag ccgtgcgcgc gcacgcgcct cgcttcggag
      181 cgcgaggagg cccgaggcga ccgacgcgag cacgaccacg gcgacagccg cccgcaaggc
      241 gaaggcatgg agcggcggcc gacgcctcgc cgcccagagc cgcgcgagcc acgagcccac
      301 gagcacacag ttcgccgcgt gccagtagtg catcagcttt atgttgtcga aggcgttggg
      361 cgtgaccatc aagatgaggc tgagggcgaa gaggccggcg aaggcgaggt aaaagactcg
      421 ccagtgcctg ggcgccgcga gccacgcgag gcccgccagc aggagcgcga gcccgaagtt
      481 tctcagcatg tagagcggcc agctcgcctc gccctgaccc atccatcccg gctgaagcct
      541 tacgaagccg ccttcggccg cgtggaccgc gaccgcgagc agcctcggcg ccgcgagcaa
      601 cagcgcgggc gcccagaacg cgaaccacgc gcgccgcggc cgtagcgccg agagcaggag
      661 gcccaccacc acgaccgccg cgtatgtgtg cgggtgaaag agaggcagca gccccgtcat
      721 caagcccgcg gcgagcagca gtctcgactc actcggccgg gcgtcgccgc ccgcgcgcct
      781 ccaaacgacc gcgaacagcg tgaagaccat caggcccaac ggcaggccgt agaggctcgt
      841 gcgctgaggc agcatcgtgt cggccacgag gttcgtccag tgtatgccgc gctcccacgc
      901 gttcgcgtag ttgacgttgt tcgagttcca gaaatccgtg agcgtgcgcc cgctcgcgcg
      961 ccagtctgag aagaagtaga ggaagccgag gccgccgttc agcaggaaca ggaaggtcgc
     1021 cagcgccgcg gcgcgctgcg agcgcgcgac gcgaagggcg gccgagtaga agatggcgac
     1081 ggtcgcgagc gcgagcggca gcgccgtcca gacgagcgcc gcgctcatgc ctacccccgt
     1141 gcgcatcagg attgccgtct ggaagtcggg aacgaatggg tagtggagcg gctcgggcgg
     1201 gagcggggta tagacgggcg ggaagttttc gccgtagagg aacgacgacg cgagcgcggc
     1261 gtgcagcgcc atgtcgtacc aactgctccc gcccgaatag acgcctcccg cctcgcgcgg
     1321 cagcatgtgc gtcgagaaca ggtgccacag gacgggcgcg aagacgacga gcacgagcgc
     1381 gagccccgcg tgccttcgcg gcgtgatttt caggcgccac ccgccgcccc gcagtctccg
     1441 caactcgggc agcgagagcg cagcggcggc gagccaggcg agcgcggccg cccagacgac
     1501 ctgcgcgtgc gtgagccgcc cctgccagcg cgcggccgcg taaacacaca gcgccgagag
     1561 cgcccagccc agcacagtcc cccacgccaa ctgctccgcc ccgcccggta agccccgcag
     1621 cgcccgccgc acaagggctg cgcccgcgag cgcggccccg acgaggaaga gcacggcgag
     1681 agtcatacga gaaggggcga gggcgcgaaa cgtttttcag tttgaggagg gctcacttct
     1741 tatccgcggc cttcttctgc tggtactcga ttgagttcat gaaggcggcg gagagcttcg
     1801 acgggttatt gttgcgctcc aaatcttcga cccagaagtt gacgccgaac attcccgtgt
     1861 cgggcgggtc gtcggggttg cggcggaagt agccgaagta gtgaaggacg acgagcgagc
     1921 ggttacgctc gcgctcgacg aagcgcgggt cttcggcgac cttgaggagc gcgccgccgc
     1981 gcgtcacggc gcccgacctc agagcctcga ccagcgccgc gcgctcggcg tcgcccgtct
     2041 ggagccccgc gttggcgagc aggcgatcaa cgaactgcgc ttcgtcgagg cccgcgaagg
     2101 cttcgcggaa gtctggccgg cgcgtcagac tttccgctaa ctcgcgcatg ttggcttcga
     2161 ggcgccggtc gtcctcctcg aagccggcga tgacgccgct gcccaccgcc ttcaagtcat
     2221 taaggaactc cgcgtagcgc gggagccggc ccgtggccgc gacgtggagg cggaagagcg
     2281 tctgcgaagc ctcctggtac tggccgagca tgttgacggg gtcgtcctca acgagcgccg
     2341 cccactcgcg tatcgagagg ccgaagggga gggcggcctc gctttgcgcg tcgggctcgt
     2401 tgcgcgtgac ggcgtacagg tcgtcgcggc cgtcgaagcg gttgatgaag cgcagccgac
     2461 ccgaggccac gccgcgagcg aggaaagtct cgtagtcggc gcgccgctcg ggcgggacga
     2521 ggtgcgtctg cacgacgagg taggaggcag ggattttttc gagcagctcc atgaactgga
     2581 gctgaatggt gccgccgcgc gtgagccact cgatctgatc ctcgtagggc gggttgaagc
     2641 ccgaggtgcc gttcactagc ggtttggcgt ggtcggcggc gcgaagtatg tggcggtgat
     2701 tgtagtcgcc gcccgccggg agcgcgacga tgccgcccgt catcggggtc tccttcagcc
     2761 gcagcgtgac ggagtcgggg aacacgtcgc cccgcatgaa cttgaggggc gcgccgttca
     2821 gctctatcaa aagcagggcg cacgcggcgg cgaataccgc ccactcgcgc acgcgcggcc
     2881 ggcgctcgcg aatcagctcg gcgagccgca cggtcccgag ccccgcgagc accgccaggc
     2941 ccatgtagca gatcatcgcg ccgcgcgtag gcacccgcat gcttcggaat agcgggatga
     3001 ggtcgtagag aatccggtag aagaagaagt tccagccgag cgagtagcag aagccgacga
     3061 cgcaccacac cgcgccgagc cagaaggcgt ccgtccgccg cggcgagcgt atcgtctcga
     3121 cgagattctc gtgctcgctc aggcgcagaa agaacggcgg gtacgcgagg cacagccgcg
     3181 cgatgacggc tactgtcagg actgcgagca cgcgctctga cgtgacgtag ttgaagacgc
     3241 cccaccagaa ggcggtgccg tggaagccga cggcgaagac ggagaggacg agcgagacga
     3301 cgatgagagt gtcgagccgc ccaacccatt tcgccttagc tgccgccgcg ctcgcgagcg
     3361 agcgcgtgat agcgcgcgcc ggctcgacta tgagaactgc cgcgagcgag agcagcacgg
     3421 gcaagagccc cgggaagagc ttgaactggc cgccgccggg gattgcctct cccattccgt
     3481 gccagaactt gtttcggttc tcggccgaga gccagtggac gggccacgcg gagttggcct
     3541 gtatctccca gacgttgcgc ttgaagccgt agagcttcga cgcgatgtag tacggcagca
     3601 tgaagggcag caagcccaaa gccgccccgc ccgccgccgc cgcgccccgc cgccagaacg
     3661 cgcgctcgcg ccagaggccg tgccgtgtca gcagtatcgc ggccgagagc gccagcggca
     3721 cgagcgagag cgcgaaccac gagacggtcg tcagccccgt cgcgaatagc gcgaagccga
     3781 gccatgcagc gcggcgccgg ctccgctcgc gcgcgaagag cacgaacgcc tcgaagagga
     3841 gcggcaccca cggagagaac aggtaaggca agtgcgagag caggtgaaag cggtaaggta
     3901 tgaaggcgaa gatgatgccg gcgacccacg ccgcgcccgt cgagccggtg agcgtgcgcg
     3961 ccagccggaa cgcgccgtag ccgcacagcg cgaagccgaa gtagagcgct acggcgtgca
     4021 cggtgagcgg ccgtaagccc agagcgaaga gcgggaagaa gggcaaggcg agcccgtagt
     4081 tgtgctcgct gaaggcgagc gtgtagcggt aggggtagaa tacgttcgag tggaagaggt
     4141 tcagagggtc tgtgaaggtc tggtggtagt cccaccacag aatccacgcg acgaggtagg
     4201 ggtcgccggg gtctgcgacg gcgtcgcgca tgcgcgtcac gtacggccac gtcagcaacg
     4261 ccgtcagcag gcagaaggcg aggaagatga gtagctcgcg cacgaaggcc gcgcgcgcaa
     4321 ggcccgccag gcgggccgcg agccccccgc ccggccgcac ctcttcagtc tccgtccccc
     4381 tctcttctgc ggcgggcgcg gttgccattt ttacgcgcga agtgttagct tccaccctga
     4441 agtcacgagt cagcagccgg tataaaaact ttcttcatca agcgggccga ggcgcgggcg
     4501 tcaggtgacg ttgtgcggag ccttctgcct cccgtctgct gacttctgac ccctgcttca
     4561 gaagtcggga ttgtgtgcgc cgcgcgcgcc cggtgtcaag acggccgggc cgcggagtcg
     4621 agcccatgta caagaaccgc cgcatcgccg tcgtcgtccc agcctacaac gaggcgcgcc
     4681 acgtcggcga cgttctgcgc ggggtgccag agtacgttga ccacgtcctc gcggttgacg
     4741 attgcagcgc cgacgacacc ttcgaggtga tgaaggccgt gggcgacgcg cgcgtcgagg
     4801 cgctgcgcac gccggagaac cagggcgtcg gcggcgcgac gctcgcgggc taccgccgcg
     4861 cgctcgagct gggctgcgac gttgccgtga agatggacgg ggacgggcag atgtcgcccg
     4921 agcacctgca cctcctgctc gacgccctcg tagagcaggg ctacgactac gcgaagggca
     4981 accgcttcct cgcgggcgag tcgctcgcgc agatgccgcg ccaccgcctg ttcggcaacg
     5041 tcgtgctcac cttcctcaac aagctagcct ccggctactg gcacgtcttc gacccgcaga
     5101 acggctacac ggccgtcacc gccgaagcgc tccggcgcct cgacttcggc gcgattcacc
     5161 gccgctactt cttcgagaac gacatgctca tcgcgctcaa cttccacaac gcgcgcgtgc
     5221 gggacgtcgc cataccggcg cgctacggcg acgagcagtc cgacctgaac cccttcaagg
     5281 tgggcgtcac cttcccgctt ctgttcctac cgcgcctgtg gcggcgcgtc tatcagaagt
     5341 acgtgctccg cgacttctca cccatcgcgc tcttcctctt cgcgggcctc ctgctcttcg
     5401 cgtggggcgt catcttcggc gcctaccact gggcgaagag cgtctggacg ggccacgcca
     5461 cgccgacggg gacgataatg ctctctgtgc tgccgctcat actcggcttc cagttgatac
     5521 tcgaagccgt cgtgctcgac ataagggaga cgccgcgttg agggcgcgcg gcctcctcgg
     5581 caaagtcgag ctcggcgacg tgatgctctt cccctacgcc gtcgtcttcg cgcgccagtg
     5641 cttctgggcg gtcgggaacg actacgtggc atgggcgctc acgctcgccg ccgcgtcggc
     5701 cgtgtggctc gcgcacctct acgctaagcc ggaggccgaa gagaagacgc cgcgcgtctt
     5761 ctggctggtc gtgggcctgc cgctcctctt cgtctatctg ctgagagcgc cgctgcccga
     5821 cctctcgttc gacgttttga accaccgcct catacagggc gagcgcgcgc tgcgcggcgc
     5881 gcagctcatg ccggcggact tcttcccgac catcttcccc ttcaaccccg cgtcggacat
     5941 gctgacgggc ctgttccgcc acttgctcgg ctacaggctc gggacggtcg taaacctgct
     6001 cgcgctcctt tgggcgggga cggttctcga aaagctaatc aggccattcg tcggcggggc
     6061 agcgctccgc acgctgtgcg tgctgctcgt gctttttacg gagcacgtgc tcttcgagat
     6121 aaacaactac atggttgacc tgctggcgct gccgctcgcg ctcgaagccc tgcggctagc
     6181 gctccgctac gacgaatcgg agcacaagcg gcgcgacctc gtcttctcgg ccctgctgct
     6241 cggcgcgtgc gtcgcgctga agctgacgaa cgcagcgatg gtcttgcccg tcctgctcgt
     6301 cttcgccgtg cggatcttct cgcggcggat aagcgccgcg accgtcgttc tggtgctcgt
     6361 ctcggggctc gccttcctgc tcccgctact gccacacgcg atctacattt acgcggagac
     6421 tggcagcccc ttcttcccgc tctacaacaa gctcttcgcg tcgccgctct ggccgcacat
     6481 gaacccttac gacggccgct gggggccgcg cgactggccg gagacgcttc tgtggccctt
     6541 cctcatcgtg tcgaagccgg agcgactctc ggagcttaac gtctattcgg gccgcatcac
     6601 tctgggcgtc gtcgcgggag ctctctcgct cgtcctcccc cgcatcgggg ctcgcgcgcg
     6661 gctgctcggc ctcgccacgc tctcgggcgc gctgctctgg agcgcgacga gcggctacat
     6721 acgctatgcg ctctttctcg aactgctcgc tggcctgctc ttcgtgaacc tcgcgcgcta
     6781 cgcctacgac cgcgcggcgc ggctcccccg cccggcacgg atcgccgcgg ccgccctgcc
     6841 ggtcgcgctc ctgagcgcgc agtgcgcgct ctcctggtct tacgtcacgc ggacggagtg
     6901 gagcaagcga ctgactctct tggacgaccc cggcgcgtgg cggaaggaag cgcgctggct
     6961 gtggcgcgac cgcgacttga tgaagttcca gacagaggag gctcgctcgc tcttcgcaag
     7021 ggttgacgcg tgggtcgtga gcggcgttaa gacgaacggc gtcgaggtgc tccttcggcc
     7081 cgacgtgccg atgctcgccg tcaacaacct cgaatacttc gaccgccccg actcgcgccg
     7141 gcgcttcgcg cgtgccctcg aaacactccg gggcaagcgc atctactcgc tcagcctgac
     7201 ggaagacctc aactcctcgc tcgaatacct gcgccgtcgc cgcctcgtcg cgggcgaggt
     7261 caagaccttc acgctcccct tcttctccgc gcgcacgcag ttccacgtcg cgctaatcga
     7321 agtcggcctg ccgccgccgc gtgaggtgcc gaggcgcgcc cccgactcgc ccgaggcgag
     7381 cgaagcgacc gcccccctcg acgacgaagc ctaccaggcg ggcttaggcg tcgcggggct
     7441 gccctccgtg atgcggccgg ggcagagggc gacgataaca gtcacggtga agaacatgag
     7501 cgagttcgtg tggccctcgc gcgggcggaa ggactacacg tacctcatca ccgtgggcga
     7561 cacttggctc gcctcggacg gcgagactct cgtcaacaac atggacggcc gaaacaccct
     7621 gccgcgcgac ctctggccgg gtgaggaggc gactgtaccg ctcgacatca ccgcgcctaa
     7681 agaaccgggc gagtacgtct tagagattga cctcgtgcag gagggcataa cgttcttccg
     7741 cgacaagggg tcgcgcccct tgcgcgcggc ggtaaaagtc gaataatggt cgcggacgtt
     7801 tttaagcttt ccgcttgagg gtgaaaagat tatgagcttg aggaatttgg cgcgcggctg
     7861 cgcgctctcg ctcgcgctgc tcgttgccgc ttgcggcggg cgcgaggcgg gcaacaccag
     7921 cgcgggcgct acggccgagc cggcggggcc gaagccgccc gccgcgctgc ccgacaacgg
     7981 cttcaaggcg cagataaccc tgcccgaccc gccgacgaag ctgcgcgccg ggcagaagca
     8041 gaccgtgcag gtgaagataa agaacgcgag cgacgtgcag tggtacgcgc gcggcggcga
     8101 gttgaacacg aaccccgaca accgcttcta cctcgcggcc ggcaaccgct ggctcaaggg
     8161 cgacggaggc gagatggtga cgaacatgga cggg
//
LOCUS       DASPKR010000606         3346 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1127466, whole genome shotgun sequence.
ACCESSION   DASPKR010000606 DASPKR010000000
VERSION     DASPKR010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3346)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3346
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1127466"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..884)
                     /locus_tag="VD968_16215"
     CDS             complement(<1..884)
                     /locus_tag="VD968_16215"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family metallopeptidase"
                     /protein_id="HYE15987.1"
                     /translation="MKRLWLFAAVLLALAPPRARAQSESENVPPAWLTHAERTDYRET
                     PTLEETLAYARRLDAASPWVRLTEFGRSGQNRPLPLIVAAKGGALTPAAARRAGKAVV
                     LVQACIHAGETDGKDAGLALLRDIAVTKRRAALLDRVVLLFIPVYNVDGHERRGPFNR
                     INQNGPAEAGWRANATNLNLNRDYAKADAPETRAWLRLWDEWRPDLFIDCHVTDGADY
                     RYNVTYQFEHGENVHPAVRAWSEEAFGRRILPAAERAGNMLSPYLSFRDDRDPARGVD
                     ALVTTPRLATGYAPVVRNR"
     gene            complement(881..1051)
                     /locus_tag="VD968_16220"
     CDS             complement(881..1051)
                     /locus_tag="VD968_16220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15988.1"
                     /translation="MSDTLASIAVFVAILLLSALITNWFARTMYNRCASCGTLNARRR
                     ANCRACGAPVKR"
     gene            complement(1048..1827)
                     /locus_tag="VD968_16225"
     CDS             complement(1048..1827)
                     /locus_tag="VD968_16225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15989.1"
                     /translation="MSTVAGIFNSRAEAESAAERLRSAGFSDERISLLSPGATQQDLD
                     AVPTTETEQPGMGKALGTAVGGALGVAGGLHLGAAAASFFVPGVGPILAAGIIGAALL
                     GAGGAATGAAAGGALEDSMARELPHDELFVYEDALRKGHSVIIVTLDDEGAVYSARAI
                     LDEAGAESIDAAREAWWVGLRDAEAAEYEAEGSDFGEVEPVHRRGFEAALHPAARSRS
                     YDEDLARLRECYGDECDDRAFRRGYERGRRYHTDMLERYRG"
     gene            1986..2354
                     /locus_tag="VD968_16230"
     CDS             1986..2354
                     /locus_tag="VD968_16230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15990.1"
                     /translation="MIGVVEKHWPMSVGDGKATRKKRPRILAITTDCCTGCAGSPACI
                     EYCPIEACMFWVPDEDHPPFGRIEVDPYLCIGCQKCTSKGPDGAFLDGCPWDAIEMVP
                     TDDWEAMHGLTLPDAPPPAP"
     gene            complement(2367..3245)
                     /locus_tag="VD968_16235"
     CDS             complement(2367..3245)
                     /locus_tag="VD968_16235"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HYE15991.1"
                     /translation="MGDVGSNGSPGGAAPPDRGEARGRRRTPWPLVLLATLFVVVPFL
                     TWYWTWFGRTLGDEEIEKYLREGKPRQAQHALSQVADRVAAGDAGAARWFPSVAALAD
                     NPSTDLRMTAAWVMGVEHRSEEFRAALLRLVADPEPIVRRNAALALVRFGDARCRPEL
                     LAMLRPYAVEAPADGTAETVLSAGTPVKRESLLVRLATAGGGRVEVRSPVPGRVEKAL
                     AAEGASVRKGEPLFLIAPDSEQARDALIGLAYFGEPEDLALVSRYEGGVEHLSDDVKR
                     QAALTAEAIRRRSQGK"
BASE COUNT          496 a         1173 c         1173 g          504 t
ORIGIN      
        1 cggttgcgca cgacgggcgc gtagccggtt gcgagccgag gcgtcgtgac gagcgcgtca
       61 acgcctcggg cggggtcgcg gtcgtcacgg aaggagaggt aaggcgagag catgttcccg
      121 gccctctcgg cggccggcag gattctccgg ccgaacgcct cttcagacca cgcgcgcacg
      181 gccgggtgga cattctcgcc gtgttcgaac tgatatgtga cgttgtagcg atagtcggcg
      241 ccgtcggtca cgtggcagtc aatgaagagg tcaggccgcc actcgtccca gagcctgagc
      301 caagcgcgcg tctcgggcgc gtcggccttc gcgtagtcgc ggttgaggtt caggttcgtg
      361 gcgttcgcgc gccagcccgc ctcggccggg ccgttctggt tgatgcggtt gaaggggccg
      421 cgccgctcgt ggccgtccac gttatagacg gggatgaaga ggaggacgac tcggtcgagg
      481 agcgcggcgc gccgcttcgt gacggcgatg tcgcgcagga gggctaggcc cgcgtccttg
      541 ccgtcggtct ctccggcgtg tatgcacgcc tgcacgagca cgacggcctt gcccgcccgg
      601 cgcgcggcgg ccggcgtcag cgcaccgccc ttcgcggcga cgatgagcgg gagcgggcgg
      661 ttctggccgc tgcggccgaa ctcggtcagg cgaacccacg gcgaggccgc gtcgaggcgt
      721 cgcgcgtagg cgagcgtctc ttcgagcgtg ggcgtctcgc ggtagtctgt cctctcggcg
      781 tgggtgagcc acgcgggcgg gacgttctcc gactcgctct gcgcgcgagc gcgcggcggc
      841 gctagggcca gcagcaccgc cgcgaaaagc cacaatcgct tcatctcttg acgggcgcgc
      901 cgcaggcgcg acagttagcg cggcggcgcg cgttgagcgt gccgcaggag gcgcagcggt
      961 tgtacatcgt gcgcgcgaac cagttcgtga ttagggcgct caggagcagg atggcgacga
     1021 agacggcgat gctcgcgagc gtgtcgctca acccctgtac ctctcgagca tatcggtatg
     1081 gtagcggcgg ccgcgctcgt agccgcggcg gaaggcgcgg tcgtcgcact cgtcgccgta
     1141 gcactcgcgc aggcgcgcga ggtcttcgtc gtatgagcgc gagcgcgccg cggggtggag
     1201 ggccgcctcg aagccgcgcc ggtggacggg ctctacctcg ccgaagtcgc tgccctcggc
     1261 ctcgtactcc gcggcctcgg cgtcgcgaag gccgacccac cacgcctcac gtgcggcgtc
     1321 aatgctctcg gcgccggcct cgtcgagaat ggcgcgggcg ctatagacgg cgccctcgtc
     1381 gtcgagcgtg acgatgatga cggagtggcc ttttcgcagc gcgtcctcat agacgaagag
     1441 ctcgtcgtgc ggcagctcgc gcgccatcga gtcttccagc gccccgccag cggccgcgcc
     1501 ggtcgccgcc ccgcccgcgc cgagcagcgc cgcgccgatg atgccggccg ccagaatcgg
     1561 cccgacccct gggacgaaaa agctcgcggc cgccgcgccg aggtgcaagc ccccggcgac
     1621 gcctaaagcg cccccgacgg ccgtccccag agccttgccc atgccgggct gctctgtctc
     1681 cgtggtcggc acggcgtcga ggtcttgctg cgtggcgccg ggcgagagaa ggcttatacg
     1741 ctcgtcggag aagcccgccg agcgaaggcg ctcggccgcg ctttcggcct ccgcgcggga
     1801 gttgaaaatg ccggcgacag tgctcatcgt tacggcctcc tggttgtagt ggtcgaaggg
     1861 aaagtgtcgg cggcgattgt agcacgaagc ggcgccgaaa aagttgattg agccggggcg
     1921 gccggtcgtg ttaaagtcct tctcgtcttc ctgaattccc tgccccttcg cggagagccc
     1981 tggatatgat cggagtcgtc gagaagcact ggccgatgtc cgtcggcgac ggcaaggcca
     2041 cgcgcaagaa gaggccgcgc atacttgcca taacgaccga ctgctgcacg ggctgcgccg
     2101 gctcgcccgc ctgcatcgag tactgcccga ttgaggcgtg catgttctgg gtgccggacg
     2161 aggatcaccc gcccttcggc cgcatagagg ttgacccgta cctctgcatc ggctgccaga
     2221 agtgcacgag caaggggccg gacggcgcct tcctcgacgg ctgcccctgg gacgcaatcg
     2281 agatggtgcc gaccgacgac tgggaggcca tgcacggcct cacgctcccc gacgccccgc
     2341 cgccggcccc gtagaaccgg ccacagtcat ttgccctgcg agcggcgcct gatggcttcg
     2401 gccgtcagcg ccgcttgcct tttcacgtcg tcgctcaggt gctcgacccc accctcgtag
     2461 cgggagacga gcgcgaggtc ttcaggctcc ccgaagtacg cgaggccgat gagcgcgtcg
     2521 cgcgcctgct ctgagtccgg cgcgattagg aacagcggct ctcccttcct gaccgacgcg
     2581 ccctccgccg cgagagcctt ctcgactcgg cccggcaccg gcgagcgcac ttccactcgg
     2641 ccgccgcccg ccgtagctaa acgcacgagc agcgattctc tcttcaccgg cgtccccgcg
     2701 ctcaggactg tctcggcggt gccgtccgcg ggcgcctcga ccgcgtaggg gcggagcatc
     2761 gcgaggagtt ccgggcggca gcgcgcgtcg ccgaagcgca cgagcgcgag cgcggcgttg
     2821 cggcgcacaa tcggctccgg gtcagccact aaacgcagga gcgccgcgcg gaactcttcc
     2881 gacctgtgct cgacgcccat cacccatgcc gccgtcatgc gcaaatctgt cgaggggttg
     2941 tcggccaacg cggcgacgct cgggaaccag cgcgccgcgc ccgcgtcgcc cgccgccacg
     3001 cggtcggcca cctgcgagag cgcgtgctgc gcctgccgcg gcttgccctc gcgcaaatac
     3061 ttctcaatct cctcgtcgcc gagcgtgcgc ccgaaccaag tccagtacca cgtgaggaac
     3121 ggcacgacga cgaagagcgt ggcgagtagg acaagcggcc acggcgttcg cctccggcca
     3181 cgcgcctccc cgcggtcggg cggcgccgca ccgccgggac tgccgttcga gccaacatct
     3241 cccaaagccg cctccccggt cggctcaccg cggcgggtag agccagtaga gcatcacgta
     3301 aaccagaacg cccgtcaccg agacgtagag ccagagcggg taagtc
//
LOCUS       DASPKR010000607         2140 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1390872, whole genome shotgun sequence.
ACCESSION   DASPKR010000607 DASPKR010000000
VERSION     DASPKR010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1390872"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(291..911)
                     /locus_tag="VD968_16240"
     CDS             complement(291..911)
                     /locus_tag="VD968_16240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15992.1"
                     /translation="MRLRLYCNRYTHFKDALVCSVSCAFRARCNDFALFYDEHREGVN
                     ALVADYYEARRRQEGDAAPAAARDPSLTHVAPVARPEELHKLIRLEVLREMAESLYIW
                     IDKEDRAELLETVEVLRRAERGQKAKHIYRVSQEMELRYQLVPRKRIEKAKRAAAVEA
                     ERSEARRTRRTPSARPAPPAPVPFPAPVPAAEAGEPSAPRRRARQR"
     gene            1280..1648
                     /locus_tag="VD968_16245"
     CDS             1280..1648
                     /locus_tag="VD968_16245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15993.1"
                     /translation="MSLALTVSLVCAGFVLGRMGRPKPPPLVVERGVLELAPIPAPGA
                     VTAGEGGEPARKPAPVYGPDGTASERPTEPGEVISICGARTQKGAPCQRRVRGTGRCW
                     QHRGRPAMLPPSKLVVQEVP"
     gene            complement(1652..>2140)
                     /locus_tag="VD968_16250"
     CDS             complement(1652..>2140)
                     /locus_tag="VD968_16250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15994.1"
                     /translation="RLARLVEREERRLRARPGYRTTARTLRALAGDYLLFEAPAAAGG
                     GGEWDAFHARNLGLAVARRMAEEHGGDADSLRRASVARVSRSLGLDASRWRGERLRAL
                     ESLSLPLALVPDLARWGDDEKAAVINIVRAKAGPDETRYLRLMQRHARLRAAFIKLGS
                     KS"
BASE COUNT          290 a          679 c          831 g          340 t
ORIGIN      
        1 cagcgcgagg gcgcacacca tgacggccgc gaggcaggcc ggcgcgattc tgcgcagcat
       61 tttggcggga aggctcttgg aagaaagcat cgctcggtaa aattccggta cggggctagt
      121 atgccgtcgc ggcgcgaggg cgcgcaaccg cgcgcgcgtg gccgtccccg gacgtagtcg
      181 cgccggagtc tttgggtact gtacgggcgg cgggcgttgc ttaaaagtga gacggcgggc
      241 cggcgaagga ctcctgtcct tcgccggccc gcgcgtgttg agcctctctt ttaccgctgt
      301 cgggcgcggc ggcgaggggc cgatggctcg ccggcttcgg ccgcggggac gggggcgggg
      361 aaggggacgg gcgcgggcgg cgcggggcgc gcggacggag tgcggcgcgt gcggcgcgct
      421 tcggagcgct cggcctcgac ggcggcggcg cgcttggcct tctctatgcg cttacgcggg
      481 actagctggt agcgcagctc catctcctgc gagacgcggt agatgtgctt ggccttctgc
      541 ccgcgctcgg cgcggcgcag cacctcgacc gtttcgagca gctcggcgcg gtcttccttg
      601 tcaatccata tgtaaaggga ttcggccatc tctcttaaaa cctccagacg gatcagcttg
      661 tgcagctctt ctggcctcgc gacgggcgcg acgtgcgtga gcgacgggtc gcgcgcggcc
      721 gccggggcgg cgtccccttc ctggcggcgc cgggcctcgt agtagtcggc gacgagggcg
      781 ttgacgccct cacggtgctc gtcgtagaag agcgcgaagt cgttgcagcg cgcgcggaac
      841 gcgcagctca ccgagcacac gagcgcgtcc ttaaagtgtg tgtagcggtt gcagtacagt
      901 ctgagacgca tcgttcgccg cgcgttggcg ctttcgggag cgtcggagac tataccacgc
      961 gcgttccgcg tgtgcaacgc ggcgttgcgc gtgaaacaaa gaagggctga gatttgttga
     1021 ttaaatcggg agcgggcggg cgtataatcg gggccggccg gtcacgcctc cgccagccct
     1081 ttcatcaata attctcttac cactagcgcg aacgacgccg ccaccccgcg cgccgcgagg
     1141 cgggagggtg acggctatgt acaggccgaa tttctgttct gagtgcggcg agcgtgtggt
     1201 gcgtgcgcgc tggcgcgtgt ggacgagcag gcggttctgc tcggcttgcg cgcgtcgctt
     1261 ccggcgcggg cgggctcttg tgtcgctggc gctaacggtg agcctggtct gcgcggggtt
     1321 cgtgctcggg aggatgggaa ggccgaagcc gccgccttta gtcgtcgagc gcggagtcct
     1381 ggagcttgcg cctatcccgg cgcccggcgc ggtgacggcc ggggagggag gggagccggc
     1441 acgcaagccc gcgccggttt acggcccgga cggcacggcg tcggagcggc cgacggagcc
     1501 gggcgaggtc atctccatct gcggcgcgcg cacgcagaaa ggcgccccgt gccagcggcg
     1561 cgtccgaggc acgggccgct gctggcaaca ccgggggcgc ccggccatgc tcccgccgtc
     1621 gaagcttgtc gtgcaggaag tgccttgagg cttaactctt cgacccgagc ttgatgaagg
     1681 ccgcgcggag gcgcgcgtgc cgctgcatga gacgcaggta gcgcgtctcg tcggggccgg
     1741 ctttggcccg gacgatgttg atgacggcgg ccttttcgtc atcgccccag cgcgcgaggt
     1801 ctgggacgag cgcgagcggg agcgagaggc tttcgagcgc gcgcagccgt tcgccgcgcc
     1861 agcgcgaggc gtcgaggccg agcgagcgcg agactcgggc gaccgatgca cggcggagac
     1921 tgtcggcgtc gccgccgtgc tcctcggcca tgcggcgcgc gacggcgagg cccaagttgc
     1981 gggcgtggaa ggcgtcccac tcgcctccgc cgcccgcagc ggcgggcgcc tcgaagagaa
     2041 ggtagtcgcc ggcaagcgcg cgcagcgtgc gcgcagtagt cctgtagccg gggcgtgcgc
     2101 ggagcctgcg ctcctcccgc tcgacgagcc gggcgaggcg
//
LOCUS       DASPKR010000608         5359 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_95036, whole genome shotgun sequence.
ACCESSION   DASPKR010000608 DASPKR010000000
VERSION     DASPKR010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5359)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5359
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95036"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..486)
                     /locus_tag="VD968_16255"
     CDS             complement(<1..486)
                     /locus_tag="VD968_16255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15995.1"
                     /translation="MSSEGNEPAAKRAPTEQQESKPGVPKRFAVGQTVCNEKNEKGKL
                     CNGHLKQKDTRHPSAAYLRGDDVLYQCQTCGALYMGPPMGHVRDPRKQRRYVERDLAA
                     ILQAAGGTLPAYDYPTPAWRGEPKPKPVKAVKPAPAAKAPAAASPADSSPSADKHRPA
                     AE"
     gene            618..872
                     /locus_tag="VD968_16260"
     CDS             618..872
                     /locus_tag="VD968_16260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15996.1"
                     /translation="MSTELDRETADRDGELFIRDLAETCTRGPAAAGERAKDEDDYDD
                     DDEGVVTTMMLGEEGDRGGADEEETDEGVVTTMMVGEEGK"
     gene            complement(891..1850)
                     /locus_tag="VD968_16265"
     CDS             complement(891..1850)
                     /locus_tag="VD968_16265"
                     /inference="COORDINATES: protein motif:HMM:NF020032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15997.1"
                     /translation="MTEPSHTIGIFGSASDPQAARVAAYLRGRGVEPLLIDSGRFPAR
                     LRLSVEEGVARLGGGRLPGGSAWYVRSLPMTMPFFDFDPEVEAGTTTELLSKWRLRYA
                     AERERQSFLAGFVLALGRAGARLVNRPEALDQHFVKLEQLARLRAAGVPTPRTLATND
                     PVALRRFAEEVAGCVVYKPLAGGGLCRRLGPEDLGEGRLEALARAPVLFQEEAAGRNL
                     RAYVVAGRVVAAYEILSDEVDYRGSEKGLTEAALTEAEREASARAAEACGMLFTGLDI
                     KRRADGSFVVLECNPSPMFAAIEERTGRSPVTEALGELLLAPL"
     gene            1913..2380
                     /locus_tag="VD968_16270"
     CDS             1913..2380
                     /locus_tag="VD968_16270"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HYE15998.1"
                     /translation="MLKKLLAGVWKGAPVFVRRAGVWLTQPRFTVTAGAVVLDERGRV
                     LLLKHALRKGSGWGIPGGFIERGEQPDDAIRREVREETGLELGTVRVAFARTLLRPSQ
                     VEIVFRATMRASAVAGARSSFEVDRAEWFDPSSLPEELGADQRRLIARALSAG"
     gene            2521..3153
                     /locus_tag="VD968_16275"
     CDS             2521..3153
                     /locus_tag="VD968_16275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE15999.1"
                     /translation="MMPRLIPESEEVMEMLRRTGAYREGHFVYPSGQHTPHYFQMPLA
                     FRYYDTARVLAVALSRKLRLEKDISSALPKISIISPSPGGIPVAFAVREALGADQIYW
                     AEREEGGKRMFRQYVNRGEVYPAVIVDDISRSGHAINETVNLVREMGTKLIGCGVIVR
                     FKNAPLHIETAGGEDPVPILSLVEFDAKWYDDGKDCVECRKDAPVENVRF"
     gene            complement(3156..3785)
                     /gene="recR"
                     /locus_tag="VD968_16280"
     CDS             complement(3156..3785)
                     /gene="recR"
                     /locus_tag="VD968_16280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HYE16000.1"
                     /translation="MPIALMLEYSEPVTKLIDEFKRLPGVGQKSAQRLAFHVLRMSEE
                     EVGRFVAALEDVKRKIVMCSVCNNLTDVDPCRFCSSTSRDRSTICVVEEPYNLVAVEK
                     TRSFNGLYHVLHGALSPIRGMSPEDLRLQNLLPRLRPENNDGVEVREVILATNPNTEG
                     EATASYISRLLKPLGLRVTRIAMGMPVGSDLEYVDEVTMDKALANRHEM"
     gene            complement(3848..4153)
                     /locus_tag="VD968_16285"
     CDS             complement(3848..4153)
                     /locus_tag="VD968_16285"
                     /inference="COORDINATES: protein motif:HMM:TIGR00103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HYE16001.1"
                     /translation="MKFPGGMNIQQMMKQAQAMQEKMAKEMEEMVVDASAGGGVVTVQ
                     MRGTKEVEAIKIDPEAVKDGDVEMLQDLIVAAVNEAGRKVDEAMKGKLGGMLPPGLL"
     gene            4328..>5359
                     /locus_tag="VD968_16290"
     CDS             4328..>5359
                     /locus_tag="VD968_16290"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HYE16002.1"
                     /translation="MKRYRIKRPEGARLPDRLARYREELNEEQYAVATAPAGAALVIA
                     GAGSGKTRAITYRVAYLVEHGVAPARIMLATFTNRAAREMLRRVEHLTGGSGDVARRV
                     WGGTFHRIANLVLRRHAESLGYTSNFSILDTEDAKDFIAVCVDEAGIDTKARRFPKAE
                     VLQDIISFATNTDQPISDVVPRRYPYFEPLSAQIERVDRLYAERKRERNVMDYDDLLL
                     NWKRLLEEKPDVARVYQEQFEHVLVDEYQDTNKLQSEIVDLLTVRHRNVMVVGDDAQS
                     IFAFRGAAVEGIYEFPKRYPEARVFRLETNYRSTPEILAVANTAIASNRRQFPKVLRA
                     ARPSLGLQPA"
BASE COUNT          899 a         1844 c         1750 g          866 t
ORIGIN      
        1 ctccgcggcc gggcggtgtt tgtcggccga gggggaagag tctgccgggg acgcggcggc
       61 cggggccttc gccgcgggcg cgggcttgac tgctttaaca ggtttcggct tgggctcgcc
      121 acgccacgcg ggcgtggggt agtcgtatgc ggggagcgtg ccgcccgcgg cctgtaggat
      181 cgccgcgagg tcgcgctcga cgtagcgccg ctgcttgcgc gggtcgcgca cgtggcccat
      241 cggcggcccc atgtagagcg cgccgcacgt ctggcactgg taaagcacgt cgtcgccgcg
      301 caggtaggcc gccgaagggt ggcgcgtatc tttctgcttg aggtggccgt tgcagagctt
      361 gcccttctcg ttcttctcgt tgcagacggt ctgccccacg gcgaagcgct tcggcacgcc
      421 cggcttcgac tcctgctgct cggtcggcgc ccgcttcgcg gcaggctcgt tgccttcgct
      481 cgacatcttt tgagttagct cctccgcgcg gaaatttcgg agactgcggg actgcgagca
      541 tcttacgcag aagccgtctg gcgcgtcaac gagggcggaa gtgtgttagc atgcgcgctc
      601 aaaggagact aagggacgtg agcaccgaac tcgacagaga gactgccgac cgcgacggcg
      661 agcttttcat ccgcgacctc gccgagacct gcacgcgcgg gcccgccgcc gcaggcgagc
      721 gcgccaaaga cgaggacgat tacgacgacg atgacgaggg cgtcgtcacg accatgatgc
      781 tcggcgagga gggcgaccgc ggcggcgcgg acgaagaaga gacggacgag ggcgtcgtca
      841 cgaccatgat ggtcggggaa gagggcaagt gagccggggg cgcggccggg tcagagcggc
      901 gcgagcagca gctctcccag cgcctcggtg acgggcgagc gccccgtgcg ctcctcgatg
      961 gcggcgaaca tcggcgaggg gttgcactcg aggacgacga acgagccgtc ggcgcgccgc
     1021 ttgatgtcga gccccgtaaa aagcatgccg cacgcctcgg ccgcccgcgc cgacgcctcg
     1081 cgctcggcct cggtcagcgc ggcttccgtc aatcccttct cactcccgcg atagtcaacc
     1141 tcgtccgaca gaatctcgta agccgccacg acgcgcccgg ccacgacgta ggcgcgcaag
     1201 tttctgcccg cagcctcctc ctgaaaaagc accggcgcgc gcgcgagcgc ttcgagccgc
     1261 ccttcgccca agtcttcagg cccgagccgc ctgcacaggc cgccgcccgc gagcggctta
     1321 taaacgacac accccgcaac ctcttcggcg aaacggcgca gcgccaccgg gtcgttcgtc
     1381 gcgagcgtgc gcggagtggg gactccggcc gcgcgaaggc gcgcgagctg ttcgagctta
     1441 acgaagtgct ggtcgagcgc ttcggggcgg ttcacgagcc gcgccccagc gcgcccgagc
     1501 gcgagcacga agcccgccag aaacgactgc cgctcccgct cggccgcgta ccgcagcctc
     1561 cacttcgaga gcaactccgt cgttgtcccg gcttccacct ccgggtcgaa gtcgaagaac
     1621 ggcatcgtca tcggcaaaga gcgcacgtac cacgccgacc cgcccggcag ccgcccgccc
     1681 ccaagccgcg caacgccctc ctcgaccgaa agcctcagcc gcgccgggaa ccgccccgaa
     1741 tcaatcaaca gcggctctac gccgcgccct ctcaagtaag ccgccacgcg cgccgcctgc
     1801 gggtcgctcg cgctcccgaa tatcccgatg gtgtgtgaag gctcagtcat ctgctgccgc
     1861 ccgcgcccgt tttataaccg agaccgggcg gcttctgcta tccttccggc gcatgctgaa
     1921 gaagcttctg gcgggcgtgt ggaagggcgc gccggtgttc gtgaggcggg ccggggtctg
     1981 gctcacgcag ccgcgcttca ccgtgacggc gggcgcggtt gtgctcgacg agagggggcg
     2041 cgtgctgctg ctcaaacacg cgctgaggaa ggggagcggc tggggcatcc ccggcggctt
     2101 catcgagcgc ggcgagcagc ccgatgacgc catacgccgc gaggtcaggg aggagacggg
     2161 gctggaactg ggaacagtcc gagtcgcctt cgcgcgcacg ctccttcggc cctcgcaggt
     2221 cgagatagtc ttccgcgcga cgatgcgcgc gtcggccgtc gccggggcgc gctcgagctt
     2281 cgaggttgac cgcgccgagt ggttcgaccc ctcttcgctc ccggaggagc tcggcgccga
     2341 ccagcgccgc ctcatcgcgc gcgccctctc ggccgggtag cgcaaacgcg ccccgatagt
     2401 ggtatgcttg cgggaaccga aatccagtag ccaggggtca ggggtcagat tgcaagtggt
     2461 cacgcccgcc ttctgtctcc cggctcctga ctcctgactt cccataggag agaaacgccg
     2521 atgatgccgc gactgatacc ggagtccgaa gaggttatgg agatgctcag gaggacgggc
     2581 gcgtaccgcg agggccactt cgtctatccg tcagggcagc acacgccaca ctacttccag
     2641 atgccgctcg cgttccgcta ctacgacacg gcgcgcgtcc tggcggtcgc gctctcccgg
     2701 aagctcaggc tcgagaagga catatcgagc gcgctcccga aaatctccat catctcgccg
     2761 agccccggcg gcatccccgt cgccttcgcc gtgcgcgagg ccctcggcgc cgaccagatt
     2821 tactgggccg agcgcgagga gggcggcaag cgcatgttcc ggcagtacgt gaaccgcggc
     2881 gaggtctatc cggcggtcat cgtggacgat atctcgcgct ccggccacgc cataaacgag
     2941 accgtcaacc tagtgcgcga gatggggacg aagttaatcg gctgcggcgt catcgtccgc
     3001 ttcaagaacg cgcccctgca catcgagacg gccggcggcg aagaccccgt ccccatcctc
     3061 tccctcgtcg agttcgacgc gaagtggtac gacgacggca aggactgcgt cgagtgccgc
     3121 aaggacgcgc ccgtcgagaa cgtccgcttc tgaagtcaca tctcgtggcg gttggcgagc
     3181 gccttgtcca tcgtgacctc gtcaacatac tcgaggtcgg agccgacggg catgcccatc
     3241 gctatgcgcg tgacgcggag gcccagaggc ttgaggagcc ggctgatgta gctggccgtg
     3301 gcctcgccct cggtgttggg gttcgtggcg agtatgacct cgcgcacctc gacgccgtcg
     3361 ttgttctcgg gccgtagtct cggcaggagg ttttgcagtc gcaggtcttc gggcgacatg
     3421 ccgcgtatgg gcgagagcgc gccgtgcagt acgtggtaga ggccgttgaa gctgcgcgtc
     3481 ttctcgacgg cgacgaggtt gtagggctcc tcgacgacgc agatggtgga gcggtcgcgc
     3541 gaagtggaag agcagaagcg gcacgggtca acgtccgtga ggttgttgca gaccgagcac
     3601 atcactatct tgcgcttcac gtcttcgagc gccgccacga accggcccac ctcctcctct
     3661 gacatcctca gcacgtggaa ggcgagcctc tgcgcggact tctgccccac gcccggcagg
     3721 cgcttgaact cgtcaatcag cttcgtgacc ggctcggaat actcaagcat aagagctatc
     3781 ggcaatcagc agtcggcagt cggctaaagg caacccgtct gaccgccgac tgcggacggc
     3841 ttgccgctta taaaagcccc ggcgggagca tgccgccgag cttgcccttc atggcctcgt
     3901 caaccttgcg gccggcctcg ttgacggcgg cgacgatgag gtcctggagc atctcaacgt
     3961 cgccgtcctt cacggcctcg gggtcaatct taatcgcctc gacctccttc gtgccgcgca
     4021 tctggacggt gacgacgccg ccgccggcag aggcgtcaac gaccatctcc tccatctcct
     4081 tcgccatctt ctcctgcatg gcctgcgcct gcttcatcat ctgctgtatg ttcatcccgc
     4141 cgggaaattt catcgccgcc acctctcctg gaatgagtcg ttcggtgcag ccaatcctag
     4201 ccgccaacgg gcgcgaaagc aaacgggaaa gaactggcgc ccggggtgcg ggggcgacgg
     4261 cgggaagccg ttctaactcg ccgcttgtca cccgccgccg ctctcgtgct ataaggcttc
     4321 agaggccatg aagcgctacc gtataaagcg gcccgaaggc gcgcggctgc ccgaccggct
     4381 cgcgcgctac cgcgaggagc tgaacgagga gcagtacgcc gtggcgaccg cgcccgcggg
     4441 cgccgcgctc gtcatcgcgg gcgcggggtc gggaaagacg cgcgcgataa cctaccgcgt
     4501 cgcctacctc gtcgagcacg gcgtcgcccc cgcgcgcata atgctcgcca ccttcacgaa
     4561 ccgcgccgcg cgcgagatgc tccgccgcgt cgagcatctc accggcggct ccggcgacgt
     4621 tgcgcgccgc gtctggggag gcacattcca ccgcatcgcg aacctggtgc ttcgccgcca
     4681 cgcggaatca ctcggctaca cgtcgaactt ctccatactc gacacggagg atgcgaaaga
     4741 tttcatcgcc gtgtgcgttg atgaggccgg catagacacg aaggcgcgcc gcttccccaa
     4801 ggcggaagtc ctacaggaca tcatcagctt cgccaccaat accgaccagc ccatctcgga
     4861 cgttgtgccg cgccgctacc cctacttcga gccgctctcg gcgcagatcg agcgcgttga
     4921 ccgcctctac gcggagcgca agcgcgagcg caacgtgatg gactacgacg acctgcttct
     4981 gaactggaag cggctgctcg aagagaagcc ggacgtggcg cgcgtttatc aggagcagtt
     5041 cgagcacgtg ctagttgatg agtatcagga tacgaacaag ttgcagtccg agatagttga
     5101 cctgctcaca gtccgccacc gcaacgtgat ggtagtgggc gacgacgcgc agagcatctt
     5161 cgccttccgc ggtgccgccg tcgagggcat ctacgagttc ccgaagcgct accccgaagc
     5221 gcgcgtcttc cgcctcgaga ccaactaccg ctccacgccc gagatactcg ccgtcgccaa
     5281 cacggcaatc gcctctaacc gccgccagtt cccgaaggtt ttgcgcgcgg cccggccgtc
     5341 gctcggcctt cagcccgcg
//
LOCUS       DASPKR010000609         6075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_482149, whole genome shotgun sequence.
ACCESSION   DASPKR010000609 DASPKR010000000
VERSION     DASPKR010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6075)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6075
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482149"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2414
                     /locus_tag="VD968_16295"
     CDS             <1..2414
                     /locus_tag="VD968_16295"
                     /inference="COORDINATES: protein motif:HMM:NF038122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NF038122 family metalloprotease"
                     /protein_id="HYE16003.1"
                     /translation="GLTIVLRGTAQLDANPEAKAAFTRAAAAWEAIITTPITVVIDVD
                     YGTTRFGQAWSSDRTLGSTSSTFYGRTLSEVRTQLINRASNAEEAGIYNLLPTSSVPT
                     DIGPTSTVLLATPLLRALGFRSADATTDTGVNVPSIGFNSNFTFDLNPADGITPGQTD
                     FEAVAIHEIGHVLGFNSFVGNRELNTSSPVYVTLWDLFRFRPSTAQGQFPSAQRILSS
                     GGEHVHFDGGQELRLSTGRPDGTEGDSRQASHWKDDALSGYFVGIMDPTIPSGRREEM
                     TANDRRTVDFFGYSLGAGPPAPDNDNFANPVVLVGSSGSVNGTSAGATEEAGEPDHVG
                     NRGGHSVWYRWTAPATGPATFDTVGSTFDTLLAVYTGGGYGSLSAIVGNDDIADGSNR
                     QSRVQFNAVAGTTYQIAVDGWNGDFGSITLNWSSSAAATPTPTPTPTPTPTPTPTPTP
                     TPTPVTYVVTGRVVDAAGSGVSGVSVALAGPPLPNGLQYLPTVSGTNGFFSFSGLSAG
                     ASYTLTPIKDGRYNFNPGSVSFPALGGNQDVTFTASPGNPIDGSSTFVAQHYRDFLNR
                     EADAGGLNFWTQGIESCGADLQCREVKRIDTSAAFFLSIEFKETGYLVYRMYKAAYGN
                     MPGAPVPVRREEFIPDTQRIGQGVVVGTNGWAALLESNKVAFANEFVARARFTTAFPS
                     GMTPAEFVSKLNTNAGGVLTQAEADALVAELSANNTAAGRASVLRKVAENAELQRRET
                     NKAFVLMQYFGYLQRNPNDLPDTGFGGFNFWLGKLNEFNGDYRRAEMVRAFLDSIEYR
                     RRFAP"
     gene            2670..5324
                     /locus_tag="VD968_16300"
     CDS             2670..5324
                     /locus_tag="VD968_16300"
                     /inference="COORDINATES: protein motif:HMM:TIGR03437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16004.1"
                     /translation="MKKAFRLSRASVVTLALALFFCAIILVQAQTVSNSPDPFVVQIT
                     STSIPPVPASTASPTPTPAASPTPTPSPTPLQRDSHATDMTGDGRFVVIESEGDISTE
                     RSDSRNNRDGNPEIFLFDYAQRRIFQITDTRSALKSATASPIDPANIEVQVVNLRPQI
                     SHDGRYIVFLSNAYVDAPGDADPNPSEFDGNTAANLAGLKADGNTEIFIYQVPEVAAA
                     DLTSGAEVPRVELTGGAMTRVTTTPASRTPTAGFSTTVDGVTFVVPPFFARDNDSPSV
                     NDDGSLVAFVSQSKSGITATNADGNQEIFLWRRESGAFVQVTQTADKPATGNTPGTLV
                     FNTNPSLSACAGALACRLAFLSNSDVGSDEAAANQGNGEIYVTTVTGATVGALAPATK
                     TPPERRIGFEGTPVNFLGFGRRLSRDGQFLAFESSALFGTDGTLSGGTNGLANTYGIY
                     IFNTVSRTFAQVASRVPDNQAPDLANRFPTFTGDSTRVVWASDLNVKPDGTIAAFGAA
                     EGLNPARRTQIFTAPVAATNQVSVLTRNPTSVSGFPAGARIPVQPLPSDTIRRVAFSM
                     RGTELGGGNADGSSEAFYLLVPAVTSETPAPSPSPAASPAQVSFFTGASDRPVVSPSP
                     SPTPPAVSGLAPGMLGIARSPLALAPSEREVDKNTAHETNRRPPLPVELNGVSVSINN
                     AAAGLYFVAPGQINFVVPPGLAASTTPVPVVINNNGAVIRTSLLLNAAQPDLFTSTNG
                     EGGRAAVLNVTNPCVEPPGEPFTVMTTRPKNSGTTGDCSSPETEAAPTRLLILLTGLP
                     DVVAVNNVTVRIGTTDIVGTTDPATSPIKFAGSTLTPGFDQITVDLPASLAGAGDVPV
                     IVIVNIGNTLFSSRPAETAPRITILPNP"
     gene            5413..>6075
                     /locus_tag="VD968_16305"
     CDS             5413..>6075
                     /locus_tag="VD968_16305"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE16005.1"
                     /translation="MRIGLDAIPLTEERAGVGHYTFELARALARLSPEGEFQLLYPSS
                     FEPVRLGEAESASLPSNLRLERVRVGSLGRHWWSLGLPRRLRRLGLALFHGTNYDVPL
                     WGRCAKALTIHDLSLLLRPDTHEERRVSRARRRLPLMTRAADALIVPTESVRREVCEH
                     LGVAPEKVFAVPEAARECFRPLAFGETEEARRRLGVGDEFLLAVGTIEPRKNLPALVR
                     AFG"
BASE COUNT          956 a         2296 c         1884 g          939 t
ORIGIN      
        1 cggggctgac catcgttctg cgcggcacgg cgcagctcga cgccaacccc gaggcgaagg
       61 ccgccttcac gcgcgccgcc gcggcgtggg aggcgataat cacgacgccc atcacggtcg
      121 tcatagacgt tgactacggc acgacgcgct tcggccaggc ctggtcttcg gacaggacgc
      181 tcggctcgac ctcgagcacc ttctacggca ggacgctctc cgaggtgcgc acgcagctca
      241 tcaaccgcgc ctcgaacgcc gaggaggcgg ggatctacaa cctcctgcct acctccagcg
      301 tgccgaccga catcggcccg acctcgaccg tgctgctggc gacgccgctg cttcgcgctc
      361 tgggcttccg cagcgccgac gcgactacgg acacgggcgt caacgtcccc tccatcggct
      421 tcaactcgaa cttcactttc gacctcaacc ccgcggacgg catcacgcca gggcagaccg
      481 acttcgaggc cgtcgccatt cacgagatag gccacgtcct cggtttcaac tccttcgtcg
      541 gcaaccgcga gctgaacaca tcgagccccg tctatgtaac gctctgggac ttgttccgct
      601 tccgcccctc gactgcgcag gggcagttcc cgtcggcgca acgcatactc tcctccggcg
      661 gcgagcacgt tcacttcgac ggtgggcagg agcttcgcct ctcgacgggc cgcccagacg
      721 gcaccgaggg cgactcgcgc caggccagcc actggaagga cgacgcgctc agcggctact
      781 tcgtcggcat catggacccg accatcccgt cgggccgacg cgaggagatg acggccaacg
      841 accgccgcac ggttgacttc ttcggctact cgctcggcgc aggcccgccc gcgcccgaca
      901 acgacaactt cgccaacccg gtcgtcctcg taggctcctc gggctcggtc aacggcacca
      961 gcgccggcgc gaccgaggag gcgggagagc ccgaccacgt cggcaaccgc ggcggccact
     1021 ccgtctggta tcgctggacg gctcctgcca ccggccccgc cacgttcgac accgtcggca
     1081 gcaccttcga cacgctcctc gccgtttaca cgggcggcgg ctacggctcg ctctccgcga
     1141 tagtcgggaa cgatgacatc gctgacggct cgaaccgcca gagccgcgtg cagttcaacg
     1201 ccgtcgcagg cacgacatat cagatagcag ttgacggctg gaacggcgac ttcggctcga
     1261 tcacgctcaa ctggtcttcg tcggccgcgg cgacccccac gccgacccct acgcccacgc
     1321 ctacgccgac ccccaccccg acaccgacgc ccacccccac gcccgtgacc tacgttgtca
     1381 cggggcgcgt cgtggatgcg gccggctcgg gcgtctctgg cgtctctgtg gcgctcgcgg
     1441 ggccgccgct cccgaacggg cttcagtacc tgccgacggt ctcgggcacg aacggcttct
     1501 tctccttctc gggcctctcg gccggcgcct cctatacgct gacgccgatt aaggacggcc
     1561 gctataactt caaccccggc tcggtctcgt tcccggcgct cggcggcaac caggacgtga
     1621 cgttcacggc ctcgcccggc aacccgattg atggctcctc gaccttcgtc gcccagcact
     1681 accgcgactt cctcaaccgc gaggcggacg cgggcggcct caacttctgg acgcagggca
     1741 tagagtcctg cggcgcagac ctccagtgcc gcgaggtcaa gcggatagac accagcgccg
     1801 ccttcttcct ctcgatagag ttcaaggaga ccggctacct cgtctatcgc atgtacaagg
     1861 ccgcctacgg caacatgccc ggcgcgcccg tccccgtaag gcgcgaggag ttcatccccg
     1921 acacgcagcg catagggcag ggcgtcgtcg tcggcacgaa cggctgggcg gcgctgctcg
     1981 aatccaacaa ggtcgccttc gccaacgagt tcgtcgcgcg cgctcgcttc acgacggcct
     2041 tcccctcggg gatgacgccc gcggagttcg tctcgaagct caacacgaac gccggcggcg
     2101 tgctcacgca agccgaggcg gacgcactcg tcgccgagct ttcggccaac aacacggccg
     2161 cgggccgcgc ctctgtgctt cgcaaggtcg ccgagaacgc ggagcttcag cgccgcgaga
     2221 cgaacaaggc tttcgtcttg atgcagtact tcggctacct ccagcgcaac ccgaacgacc
     2281 tgccggacac gggcttcggc ggcttcaact tctggctcgg caagctgaat gaatttaacg
     2341 gcgactaccg ccgcgccgag atggttcgag ccttcctcga ctccatcgag taccggcgcc
     2401 gtttcgcccc gtgagcgcgg gcggctgatg tcttactgac gcgcgggggg ccgtgtaaga
     2461 gtctgtcact tacacggccc cccgcgcctt tcactgccgc tcgcttgcgc gtggcggagg
     2521 cttccgctta aaatgccatt tctttactcc tgcggcgcgc ccggcgcagt agtacaggtt
     2581 cccgcgtagg cccagacgcc acgcccgccc gtctcccgtg ggctttaata gtcggcagtt
     2641 ttaatatgct ccagcccgga ggtttttccg tgaagaaggc tttccgcctg tcccgcgcga
     2701 gcgtggtgac gttggcgctc gctctatttt tctgcgcgat catactcgta caggcgcaga
     2761 ccgtctcgaa ctcgcctgac cccttcgtcg tccagataac ctcgacctcg ataccgcccg
     2821 tgccggcctc gacggcgtcg cccacgccca cgccggcggc gtcgccgacg ccgacgccct
     2881 cgccgacgcc cttgcagcgc gactcgcacg cgaccgacat gacgggcgac ggccgcttcg
     2941 tcgtaatcga gtcggagggc gacatctcca ccgagaggtc tgactcgcgc aacaaccggg
     3001 acggcaaccc ggaaatcttc ctcttcgact acgcgcagcg ccgcatattc cagataaccg
     3061 acacgagaag cgcgctaaag agcgcgacgg cctcgcccat tgacccggcc aacatagagg
     3121 ttcaggtcgt gaacctccgc ccgcagataa gccacgacgg ccgctacata gtcttcctct
     3181 cgaacgccta cgttgacgcg cccggcgacg cagacccgaa cccctcggag ttcgacggca
     3241 acacggccgc caacctcgcg ggcctgaagg ccgacggcaa caccgaaatc ttcatctacc
     3301 aggtgccgga agtcgcggcg gcggacttga cgagcggcgc cgaagtgccg cgcgtcgagt
     3361 tgaccggcgg cgcgatgacg cgcgtgacga cgacgcccgc ctcgcgcacg cccacggccg
     3421 gcttctccac cacggttgac ggcgtcacct tcgtcgtgcc gcccttcttc gcgcgcgaca
     3481 acgactcgcc gtccgtcaac gacgacggct cgctcgtcgc cttcgtctcg cagtctaaga
     3541 gcgggataac ggcgacgaac gccgacggca accaggaaat cttcctctgg cggcgcgagt
     3601 ccggcgcctt cgtgcaggtg acgcagacgg ccgacaagcc cgcgacgggc aacacgcccg
     3661 gcacgctggt ctttaacacg aacccgtcgc tctcggcctg cgccggcgcg ctcgcctgcc
     3721 ggctggcctt cctgtctaac tccgacgtgg gctcggacga ggcggcggcg aatcagggca
     3781 acggcgaaat ctacgtgacg accgtgacgg gggctacggt cggggcgctg gcgcccgcga
     3841 cgaagacccc acccgagcgg cgcataggct tcgaggggac gcccgtcaac ttcctcggct
     3901 tcggccggcg cctgagccgc gacgggcagt tcctcgcctt cgagtcctcg gcgctcttcg
     3961 gcaccgacgg cacgctctcg ggcggcacta acgggctggc gaacacctac ggcatataca
     4021 tctttaacac cgtctcgcgc accttcgcgc aggtcgcgag ccgcgtcccc gacaaccagg
     4081 cgcccgacct cgccaaccgc ttcccgacgt tcacgggcga ctcgacgcgc gtcgtctggg
     4141 cttcggactt gaacgtaaag cccgacggca ccatcgccgc cttcggcgcg gccgagggct
     4201 taaaccccgc gcgccgcacg cagattttca cggcgcccgt cgcggccacc aatcaggtct
     4261 cggtgctcac gcgcaacccg acctcggttt cgggcttccc cgcgggcgcg cgcatacccg
     4321 ttcagcccct gccttccgac acaatccgcc gcgtcgcctt cagcatgcgc gggacggagc
     4381 tcggcggcgg caacgccgac ggctcttcgg aagccttcta cctgctcgtc ccggccgtga
     4441 cgagcgagac gcccgcgccg agcccttcgc ccgcggctag ccccgcgcag gtctctttct
     4501 tcacgggcgc gagcgaccgg ccggtggtct cgccctcgcc atcgcccacg ccgcccgcgg
     4561 tgtcgggcct cgcgccgggc atgctgggta tcgcgcgctc gccgctcgcg ctcgcgccct
     4621 cggagcgcga ggttgataag aacaccgccc acgagacgaa ccgccggccg ccgctccccg
     4681 tcgagctcaa cggcgtctcg gtctcgataa acaacgccgc ggccgggctc tacttcgtcg
     4741 cgccggggca gataaacttc gtcgtgccgc cgggcctcgc cgcctcgacc accccggtgc
     4801 cggtcgtcat caacaacaac ggcgccgtca tacgcacgtc gctcctgctc aacgcggcgc
     4861 agccagacct gttcacctcg acgaacggcg agggcgggcg cgccgccgtc ctcaacgtga
     4921 cgaacccctg cgtggagccg ccgggcgagc ccttcacggt gatgacgacg aggccgaaga
     4981 actcgggcac gaccggcgac tgctcgtcgc ccgagaccga ggcggcgccc acgcgcctgc
     5041 tcatactgct cacgggcctg ccggacgtgg tcgcggtcaa caacgtcacg gtcaggatag
     5101 gcacgactga catcgtgggg acgaccgacc cggcgacgag ccccatcaag ttcgcgggct
     5161 cgacgctcac gcccggcttc gaccagataa cggttgacct gccggcgtcg ctcgcgggcg
     5221 cgggcgacgt ccccgtcatc gtcatcgtca acatcggcaa cacgctcttc agcagccggc
     5281 ccgcggaaac cgcgccgcgg ataaccattc tgccgaaccc ctgacgcgcc ggcgcggggc
     5341 cgccagtttc gggctgagag tcgagaggcc accggcgtcg cgcggtggcc tctcggtcta
     5401 tacggtctcc ctatgcgaat cggtctcgac gccatcccac tgacggaaga gcgcgcgggc
     5461 gtcggccact acacgttcga gctggcgcgc gccctggccc gcctctcgcc cgagggagag
     5521 ttccaactcc tctacccctc atcgttcgag cccgtccgcc tgggcgaggc ggagtcggcg
     5581 tcgctcccgt ctaacctgcg gctggagcgc gtgcgcgtgg gctcgctggg ccggcactgg
     5641 tggtctttgg ggctgccgcg gcggctccgc cggctcggcc tcgcgctctt ccacggcacg
     5701 aactacgacg tgcctctgtg gggccgctgc gcgaaggcgc tcacgattca cgacctctcg
     5761 ctgctgctac ggcccgacac gcacgaggag aggcgcgtct cgcgcgcgcg ccgccggctg
     5821 ccgctgatga cgcgcgcggc agacgccctg atagtcccga ccgagagcgt gaggcgcgag
     5881 gtctgcgagc acctcggcgt cgcgcccgag aaggtcttcg ccgtgccgga ggccgcgcgc
     5941 gagtgcttcc ggccgctcgc gttcggggag accgaagagg cccggcgaag gctcggcgtc
     6001 ggcgacgagt tcctcctggc ggtcggcacc atcgagccgc gcaagaacct gccggcgctc
     6061 gtgcgcgcct tcggc
//
LOCUS       DASPKR010000610         3870 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_734632, whole genome shotgun sequence.
ACCESSION   DASPKR010000610 DASPKR010000000
VERSION     DASPKR010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3870)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3870
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_734632"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1294
                     /gene="hydA"
                     /locus_tag="VD968_16310"
     CDS             <1..1294
                     /gene="hydA"
                     /locus_tag="VD968_16310"
                     /EC_number="3.5.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004157 - dihydropyrimidinase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dihydropyrimidinase"
                     /protein_id="HYE16006.1"
                     /translation="VIGAKLEMEADRVIDAAGKLVLPGGIDPHTHMELPFGGTESSDD
                     FRTGTIAAAHGGTTTIIDFAVQYKGQSLVEGLDNWHRKAEGKCAIDYGFHLITTELED
                     HQTEELFTVMDEGVTSFKLFMAYPGVFLVDDATIFRAMSAAGSRGGLICMHAENGVVI
                     NEIIKRALAQGRTAPKYHALTRPTIAEAEGVHRAIAIAEMAESPVYIVHLSCADALDK
                     VREARDRGIPAFAETCPQYLFLSVDDYGEDFEGAKYVMTPPLREKWNQDELWKGLNMD
                     DLQVISTDHCPFCMKEQKELGRDDFTKIPNGAPGVEHRMSLIYDGGVAQGRISPNRFV
                     ELTSTAAAKMFGLFPRKGTIAVGSDADICIFDPDATQTISAATHHMNVDYSAYEGREL
                     RGAVSTVLSRGRVVVEGGEYKGKPGDGRFQKRGSCVAL"
     gene            1318..2049
                     /locus_tag="VD968_16315"
     CDS             1318..2049
                     /locus_tag="VD968_16315"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HYE16007.1"
                     /translation="MKRVLPLMLSALLFASLLLSAAPPRAAAQERPGPRLITVSGEAE
                     VNVVPDEVFFDVTVQTVNRDLKVAKAQTDERLKKLVELTRRYGVEARDVQTDYISVEP
                     RYRGNNETRQFLGFAVRKDLAFTLRDISKAEAMLSEVIETGVTRINDIDFRTSEMRKH
                     RDQARAMAIRAAQEKAVALTKEIGQKIGKAYSIEEVSATASPMAQNYTSNTVGFSGDG
                     EASSGTLSIGQIKVNARVVVRFELE"
     gene            2052..3581
                     /locus_tag="VD968_16320"
     CDS             2052..3581
                     /locus_tag="VD968_16320"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS1 family nucleobase:cation symporter-1"
                     /protein_id="HYE16008.1"
                     /translation="MAAETLTAEERAGRRDFEELSEDVSGSPLWNRDLAPTTLAERTW
                     TTWNIAALWIGMSVVITTYTLAGGFIEAGMNWWQAMITILLGNTVVLLPMILNAHAGT
                     KYGVSFPVLCRASFGTRGANIPAVARAVVACGWFGIQTWIGGQALDALFAKMWGGWDG
                     LFGGAAFMGVAAHTWLAFLLFWGIQVLIIVRGIEGIKYLETWSAPLLLAGGAILLAWA
                     AWRAGGLGRVLSESAALQKQQQNFWSIFPGALTASVGYWATLSLNIPDFTRYARTQRS
                     QMLGQALGLPLTMTAFAFIGVAVTSATLLIYGVAIPNPVELMARFDSVAIILFATAVI
                     FAAQLTTNMAANVVSPSNDFSNLNPRLISYVAGGIITAVIGILMMPWKLMGSMGAYIF
                     TWLIGYSGLMGAIGGIMICDYWVVRRQRLDLAGLFKPSGRYSYTNGFNWRAVVALVIA
                     VAPVVPGFLRAARTPNFTGQLADPTLSDTLYTYAWFVTFGIAFAVYFALMGGREKVEK
                     G"
     gene            3586..3813
                     /locus_tag="VD968_16325"
     CDS             3586..3813
                     /locus_tag="VD968_16325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16009.1"
                     /translation="MRSGICPKCNTPTVYHKRGGIGFGGGDGVYVYTSWATRASEADH
                     YICTNCGFFETYVANEKKLAEVTSAWEKVIK"
BASE COUNT          716 a         1275 c         1233 g          646 t
ORIGIN      
        1 ggtcatcggc gcgaagcttg agatggaggc cgaccgggtg attgacgcgg cggggaagct
       61 agtccttccg ggcggcatag acccgcacac gcacatggaa ctgcccttcg gcggcaccga
      121 gtcttcggac gacttccgca ccggcactat cgcggcggcg cacggcggca cgacgacgat
      181 cattgacttc gccgtgcagt acaagggcca gtcgctcgtc gagggcttgg acaactggca
      241 caggaaggcc gagggcaagt gcgcgattga ctacggcttc cacctcatca ctaccgagct
      301 cgaagaccat cagaccgagg agctattcac cgtcatggac gagggcgtga ccagctttaa
      361 gctgttcatg gcctacccag gcgtcttcct agttgacgac gccaccatct tccgcgcaat
      421 gtcggccgcg ggctcacgcg gcggcctaat ctgcatgcac gccgagaacg gcgtcgtcat
      481 caacgagata atcaagcggg cgctcgcgca ggggagaacc gcgccgaagt accacgcctt
      541 gacgcgcccc accatagccg aggccgaggg agtccaccgc gcaatcgcca tcgccgagat
      601 ggccgagtct cccgtctata tcgtccacct ctcctgcgcc gacgcgctcg acaaagtgcg
      661 tgaggcgcgc gaccgcggca tacccgcctt cgcggagacc tgcccgcagt acctcttcct
      721 ctccgttgac gactacggcg aagacttcga gggcgcgaag tacgtcatga cgccgccgct
      781 ccgagagaag tggaaccagg acgagctttg gaagggcttg aacatggacg acctccaggt
      841 catctccaca gaccactgcc ccttctgcat gaaggagcag aaggagctgg gccgcgacga
      901 cttcacgaaa atcccgaacg gcgcccccgg cgtcgagcac cgcatgtcgc tcatatacga
      961 cggcggcgta gcgcagggca gaatctcgcc caaccgcttc gtcgagctga catccacggc
     1021 cgccgctaag atgttcggcc tcttcccgcg caaaggcacc atcgccgtcg gctccgacgc
     1081 ggacatctgc atattcgacc ccgacgccac gcagaccatc tccgccgcca cgcaccacat
     1141 gaacgttgac tacagcgcct acgaggggcg ggagctcagg ggcgccgtct ccacggtgct
     1201 ctcgcgcggt cgcgtcgtcg tagagggcgg cgagtacaag ggcaagcccg gcgacgggcg
     1261 cttccagaag cgcggctctt gcgtcgcgct ctgaggccgc gctcgaaagg aattaccatg
     1321 aagagagtgc tcccgctaat gctttccgcc ttgctcttcg cctccctcct cctgtcggcc
     1381 gcgccgccgc gggcggccgc gcaggagagg ccggggccgc gcctcatcac ggtctcgggc
     1441 gaggccgagg taaacgtcgt ccccgacgag gtcttcttcg acgtgacggt tcagaccgtc
     1501 aaccgcgact tgaaggttgc gaaggcgcag acggacgaga ggctgaagaa gctcgtcgag
     1561 ctgacgcgcc gctacggcgt cgaggctagg gacgttcaga ccgactacat aagcgtcgag
     1621 ccgcgctacc gcggcaacaa cgagacgcgc cagttcctcg gcttcgccgt caggaaagac
     1681 ctggccttca cgctccgcga catctcgaag gccgaggcca tgctctccga agtgatcgag
     1741 accggcgtca ctcgcatcaa cgacattgac ttccgcacct ccgagatgcg caagcaccgc
     1801 gaccaggccc gcgccatggc tatacgcgcc gcgcaggaga aggccgtcgc gctcacgaaa
     1861 gagatagggc agaagatcgg caaggcatat tcaatcgagg aggtcagcgc gaccgcgagc
     1921 ccgatggccc agaactacac gagcaacacc gtcggcttct cgggcgacgg cgaggcgtcc
     1981 tcggggacgc tctccatcgg ccaaataaag gtcaacgccc gcgtcgtcgt ccgcttcgag
     2041 ctcgaatagc aatggcagca gagactctca cggcagaaga acgggccggg cggcgcgact
     2101 tcgaggagtt gagcgaggat gtgtcgggca gccccctctg gaaccgcgac ctcgcgccca
     2161 caaccctcgc cgagcggacg tggacgacgt ggaacatcgc cgcgctctgg ataggcatga
     2221 gcgtcgtcat caccacctac acgctcgccg gtggcttcat agaggccggc atgaactggt
     2281 ggcaggcgat gataactatc ctgctcggga acaccgtcgt cctgctgcct atgatcctta
     2341 acgcgcacgc agggacgaag tatggcgtct ccttccccgt gctctgccgc gcctccttcg
     2401 gcacgcgggg ggcgaacatc ccggccgtgg cgcgggccgt ggtcgcgtgc ggctggttcg
     2461 ggattcagac gtggataggc gggcaggcgc tcgacgcgct gttcgcgaag atgtggggcg
     2521 gctgggacgg cctgttcggc ggggccgcct tcatgggtgt tgccgcccac acgtggctcg
     2581 cgttccttct gttctggggc atacaggttc tcatcatcgt gcgcggtata gagggcatta
     2641 agtacctcga aacgtggtcg gcaccgctgc tgcttgcggg cggcgcgatt ctgctcgcgt
     2701 gggcggcgtg gcgcgcgggc gggctggggc gggtgctctc ggagtcggcg gcgctacaga
     2761 agcagcaaca gaacttctgg tcaatcttcc ccggcgcgct cacggcgtcc gtagggtact
     2821 gggcgacgct gagcctcaac atccctgact tcacgcgcta cgcgcgcacg cagcgctcgc
     2881 agatgctcgg gcaggcgctg gggctgccgc tgacgatgac ggccttcgcc ttcatcggcg
     2941 tagcggtcac gagcgcgacg ctactcattt acggcgtcgc catccccaac cccgttgagc
     3001 tgatggcgcg cttcgacagc gtcgccataa tcctcttcgc cacggccgtc atcttcgccg
     3061 cgcagttgac gacgaacatg gcggcgaacg tcgtctcgcc ctcgaacgac ttctcgaacc
     3121 tcaacccgcg gctaatctcc tacgtcgctg gcggcatcat aacggccgtc atcggcattc
     3181 tgatgatgcc gtggaagctg atgggctcga tgggcgctta catattcacg tggctgatag
     3241 gatactcggg gctgatgggc gcaatcggcg gcataatgat ctgcgactac tgggtggtga
     3301 ggcgccagcg tctcgacctg gcggggctct tcaagccttc ggggcgctac tcgtacacga
     3361 acgggttcaa ctggcgggcc gtcgtcgcgc tcgtcatcgc cgtcgcgccc gtcgtcccgg
     3421 gcttcctgcg cgcggcccgc acgcccaact tcacgggcca gctcgcagac cccactctct
     3481 ccgacacgct ctacacgtac gcctggttcg tcaccttcgg catagccttc gcagtctatt
     3541 tcgcgctcat gggcgggcgc gagaaagtgg agaaagggtg actctatgag gagcggcatc
     3601 tgccccaagt gcaacacgcc gaccgtatat cacaagcgcg gcggcatagg gttcggcggc
     3661 ggcgacggcg tttacgttta cacctcgtgg gcgacgcggg cgagcgaggc cgaccactac
     3721 atctgcacga actgcggctt cttcgagacc tacgtcgcca acgaaaagaa gctcgccgaa
     3781 gtgacctccg cgtgggagaa ggtgatcaag tgagcgtgcg gccgcgggcc gattagctcg
     3841 ccagcaattc ttaagaagga cgggtaacga
//
LOCUS       DASPKR010000611         7726 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_350230, whole genome shotgun sequence.
ACCESSION   DASPKR010000611 DASPKR010000000
VERSION     DASPKR010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7726)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7726
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350230"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1520)
                     /locus_tag="VD968_16330"
     CDS             complement(<1..1520)
                     /locus_tag="VD968_16330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16010.1"
                     /translation="MAEMLGSRGALLARGAAAGLAPEARSGARADGRTTTAEDVAAAQ
                     GRAAAPLVVRLCEGLRLAGIAYCQFKSNWRLERWLSGEGDLDLLVEREGAARFAGVVE
                     GLGFKPARPTRDREVPGVCDYYGFDKETGRLVHLHVHHQLALGHDLTKNFRLPIERAY
                     IESASLDDLIPVPAAEFELVLFVLRMVLKHGPAEAAFGLLHGSRRPPDKAIREEMAFL
                     EARSRRDAVEAVLREHLPFVGARFFDECAATLRGECPAWRRWALRRELERRLAAHARR
                     GRAADAALKVGRRVKRFVTERAAGRPARKRLARGGALVALVGGDGAGKTTAVEGLHGW
                     LSKKFVARKFHMGKPPRSPLTLAVIVALRVRDGLPGMKPREGDFPGYLRLLRWVLAAR
                     DRRRLYMRARRFATNGGIALCDRFPVERLRLMDGPNIARTVAASRAGRFVRLLLEAEE
                     RNYRQIMEPDLLFVLRVEPETAVQRKTVESEEHVRTRSRELWEQDWSGTRAHVVDAG"
     gene            complement(1637..4006)
                     /locus_tag="VD968_16335"
     CDS             complement(1637..4006)
                     /locus_tag="VD968_16335"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HYE16011.1"
                     /translation="MNEIKLIRDDALDLQVINAGELQRPVYQVEAEAPSADRERLREF
                     LSALRRRWWVVAAVTFLCTGAVVLFMARQPDLYEAEAQVQVDLETVNTALAASKGGAL
                     ALNPVNDPAYFNTQLQILTRPALLRRVVKSLGLEGDEAFRPAQSAAPSFWARLTGGAK
                     AGGSGAEGSAERAAREGELVGSSLEGTSPEEMAEAARLAPYVEAIQEGLKVEPVKETR
                     LPIKETRLINITFEHTSPVVAARIVNAVADTFVRQNIERKNESGAETGGLLQQRINEL
                     RSQIREQEQQLLGYARNHQILSLDASQNTVVERLVGLNRQLLEAENERKLAEAAYRSA
                     LEPGAAQALAEGTVKEAGEVETRLSQLKQRRAQLLAETTEEWPEVKEADEQIAVLERQ
                     LAELRQRASSTVVANLSTKYRQAAAREQALRASFDRQRAETVTQNEAAINYKILQQEI
                     ETNKQLLDGMLQRGKEHEALVAGMRNNVRVNDYAIAPREPVGPRRLLAGAVAFSLSLG
                     FGVGLAVLLGYMDDRLRSADDVRKALPVPAVTAVPAMGARSRGLLPAPLRPRSGGRAG
                     PLIGGDADAPAPLAEAFRQLRTTVMLSGGRRAGLKSLLVTSGMPGEGKTTTAVNTAVS
                     LARTGAFVLLIDADLRNPRLHTLFGLKNERGLSTLLSEDADETEALRAVTPDGARGVD
                     VLTSGPMIPESAELLSSAQMSRLVKAFAAVYDHVVIDSPPLAFFSDGVQLSTVVDGVL
                     LVVNSGGSSRDGARRSYRLLQDVGANVCGVVLNNAEVSRLDYERYYKRP"
     gene            complement(4097..5137)
                     /locus_tag="VD968_16340"
     CDS             complement(4097..5137)
                     /locus_tag="VD968_16340"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HYE16012.1"
                     /translation="MKRKEKGEMYLRLFLAGKGALRAAGIAALMLLAYSVGAAQTAGA
                     LAAAPAGDGAGSRAGEPYRIGPGDVLEVRVFNRPQLSREAVRVEGDGSIRMPLIEGGV
                     RAACLTEAELSQEIARRYLRYLKNPQVDIFLKEFNSAPVAVLGAVTSPGRFQLQRRVR
                     LLEILSFAGGPTERAGRNIQVVHSELPLACAAGGGEVNGAGEASVVSSFRLSETLLGD
                     AAANPYVRPGDIVTVTEAEQAYVVGNVLKPSMIPLKERVTISQAIAMAGGTLPDTQSE
                     RVRVVRQAPGGAKTEIIVDLKAISKRRAEDVALQPNDIVEVPTASGKRFLRTLLGSAV
                     PSAARLPVQIIR"
     gene            complement(5134..5397)
                     /locus_tag="VD968_16345"
     CDS             complement(5134..5397)
                     /locus_tag="VD968_16345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16013.1"
                     /translation="MKKEKKRRKNALVVCRDRKQFWTTQKQFWQWVREGVVVKTGDSP
                     LAGLIVRDNEELLVLLSNTVLNLACPNHLRESLLSRRAARLRK"
     gene            6310..7269
                     /locus_tag="VD968_16350"
     CDS             6310..7269
                     /locus_tag="VD968_16350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16014.1"
                     /translation="MLWRDPGDITSRDLRYGPGSAELAPAAPFTFVEEVKKGESPKFK
                     VRDARGVEWSVKLGPEAQSETVSSRIVWAVGYFAEEAYYFDEVKIENMPRLSRGREHV
                     AGDIVRGARFEPRRDGVKEGPEWSWRDSPFEGSREMSGLKVLMILLNNFDARKGNNHI
                     LYTGTPRGREARYVVTDLGSTLGRAGGLGGKRVKNDLEAFLSTKFVRAVDEKDGVVEF
                     DFDTRPRGFGHFTVLQPFYYRGEVKKEKAMRGIPVGHARWIGTLLSRLTDEQLRGAFR
                     AASYDEATTEGYVRSLRDRINQLERLQGDTPPAEQAERNRNNL"
     gene            7280..>7726
                     /locus_tag="VD968_16355"
     CDS             7280..>7726
                     /locus_tag="VD968_16355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16015.1"
                     /translation="MSLRETTRLSLVIVFILSLGFSSPAHAVQKGKGKKKGPPPGTPV
                     LWRDHGDVSTLDLFNGPGGEEMKPELSSLTFIKEETGGYSKKYRVRDGKGRVWVAKIG
                     KEAQPETAATRLLWAAGYLPEITYLAPRVTIPGKGTFENVRFEARPA"
BASE COUNT         1252 a         2592 c         2656 g         1226 t
ORIGIN      
        1 ccggcgtcaa cgacgtgggc gcgagtcccc gaccagtcct gctcccagag ctcccgcgag
       61 cgcgtgcgga cgtgctcctc gctctcgacg gtcttgcgct gcacggccgt ctccggctcg
      121 acccgcagca cgaagagaag gtcgggctcc attatctgcc ggtagtttcg ctcctcggct
      181 tcgagcagga gccgcacgaa ccgcccggcg cgcgaggccg cgaccgtgcg cgcgatgttc
      241 ggcccgtcca tcagtcgcag ccgctcgacg gggaagcggt cgcacagcgc gatgccgccg
      301 ttcgtggcga agcggcgcgc tcgcatgtag agcctccgcc tgtcgcgcgc ggcgagcacc
      361 cagcgcagga gccgcaggta gccggggaaa tcgccctccc gcggcttcat gcccggcagg
      421 ccgtcgcgca cgcgcagcgc gacgatgacg gcgagcgtga gcggcgagcg cggcggcttc
      481 cccatgtgga acttccgcgc gacgaacttc ttcgacagcc agccgtggag gccctcgacg
      541 gccgtcgtct tccctgcgcc gtcgccgccg accagggcga cgagcgcgcc acccctcgcg
      601 agacgcttgc gcgcgggccg cccagccgcg cgctctgtga cgaaacgctt gacgcggcgg
      661 ccgaccttca gcgccgcgtc cgccgcgcgg cctcgccgcg cgtgcgcggc caggcgccgc
      721 tccaactccc gccgcaatgc ccagcgccgc cacgctgggc attcaccccg gagtgttgcc
      781 gcgcactcgt cgaagaaccg ggcgcccacg aagggcaggt gctcgcgcag aaccgcctcg
      841 accgcgtcgc gccgcgagcg cgcttcgagg aaggccatct cctcgcgaat cgctttgtcg
      901 ggcggccggc ggctgccgtg caggaggccg aatgcggcct cggccgggcc gtgcttcaag
      961 accatcctca gcacgaagag caccagctcg aactcggcgg ccgggacggg gatgaggtcg
     1021 tcgagcgagg ccgactcgat gtaggcacgc tcgattggca gccggaagtt cttcgtcagg
     1081 tcgtggccga gggcgagctg atgatgaacg tgcaggtgga cgagcctgcc cgtctctttg
     1141 tcgaagccgt agtagtcgca gacgcccggc acctcgcggt cgcgagtcgg gcgggccggc
     1201 ttaaagccga gcccttcgac gacgcccgcg aagcgggccg cgccctcgcg ctcgacgagg
     1261 aggtcgaggt ctccttcgcc cgacagccag cgttcgagcc gccagttgct cttgaactgg
     1321 cagtaggcta tcccggcgag cctcagacct tcgcacaggc gcacgacgag cggcgcggcc
     1381 gcacgaccct gcgcggcggc aacgtcctcc gccgttgtag ttcgcccgtc ggcgcgggcg
     1441 cccgagcgag cctccggggc gagccccgcc gcggcgccgc gcgcaagcag cgcaccacgt
     1501 gaacccagca tttccgccat gctcgttcct gccgtttggt agaaagccct cgcaccgccg
     1561 cggtgatgcc gggcggcggc ggggcgttcg ttgcgttcgt ttgtgcctta aggtttgggc
     1621 gtgccgggcg ggcgtctcag ggccgcttgt aatagcgctc gtagtctagc cggctgacct
     1681 ccgcgttgtt caggacgacg ccgcatacgt tcgcgcccac gtcctggagc agccggtagg
     1741 agcggcgcgc gccgtcgcgc gagctgccgc cgctgttgac gacgaggagg acgccgtcaa
     1801 cgactgtgga gagctgcacg ccgtcggaga agaaagcgag cggcggcgag tctatgacga
     1861 cgtggtcata gacggcggcg aaggctttaa cgaggcggct catctgcgcg gagctgagca
     1921 gctcggccga ctccgggatc atcggccccg acgtgagcac gtccacgccg cgcgcgccgt
     1981 cgggcgtgac ggcgcgcagc gcctcggtct cgtcggcgtc ctctgacaaa agcgtgctca
     2041 gcccgcgctc gttcttcagg ccgaagagcg tgtgaaggcg cgggttgcgc aggtccgcgt
     2101 caatgaggag gacgaaggcg cctgtgcgcg cgaggctgac agcagtgttg acggccgtgg
     2161 tggtcttgcc ctcgcccggc atgcccgaag tgacgagcag agacttaagc cccgcgcgcc
     2221 gaccgcccga cagcatcacc gtcgtcctca actgcctgaa ggcttccgca agcggcgcgg
     2281 gagcgtcggc gtcgccgccg atgagcggcc ccgcgcgccc gcccgagcgc gggcggagag
     2341 gggcggggag gagcccgcgt gacctcgcgc ccatcgcggg gacggccgtg accgcgggga
     2401 cgggcagagc cttgcgcacg tcgtcggccg agcgcagcct gtcgtccatg tagccgagca
     2461 gcacggcgag ccccacgccg aagcctagcg agagcgagaa ggctacggcc ccggccagaa
     2521 gccggcgcgg gccgacgggc tcgcgcgggg cgatggcgta gtcgttgacg cgcacgttgt
     2581 tgcgcatccc ggcgacgagc gcctcgtgct ccttgccgcg ctggagcatg ccgtcgagga
     2641 gctgcttgtt ggtctcaatc tcctgctgga ggattttgta gttgatggca gcctcgttct
     2701 gcgtgacggt ctcggcgcgc tgccggtcga acgacgcgcg cagagcctgc tcgcgcgcgg
     2761 ccgcctgccg gtacttcgtc gagaggttcg cgacgacggt cgagcttgcg cgctgacgca
     2821 gctcagcgag ctggcgttcg agcacggcta tctgctcgtc ggcctccttc acctcgggcc
     2881 actcctccgt ggtctcggcc aaaagctgcg cccgcctctg cttgagttgc gaaaggcgcg
     2941 tctcgacctc gcccgcctcc ttgaccgtcc cctcggccag ggcctgcgca gcgccgggct
     3001 cgagcgccga gcggtaggcg gcctcggcca gcttgcgctc gttctcggcc tctaagagct
     3061 gacggttgag gcccacgagg cgctcaacga cggtgttctg gctggcgtcg agcgagagta
     3121 tctggtggtt gcgagcgtag ccgagtagct gttgctcctg ctcccgaatc tgcgagcgca
     3181 gttcgttgat gcgctgctgt aggaggccgc cggtctcggc gccagactcg ttcttcctct
     3241 cgatgttttg tcggacgaaa gtgtccgcga cggcgttaac gatgcgcgcg gcgacgacgg
     3301 ggctcgtgtg ctcgaaagtg atgttgatga ggcgcgtctc cttgatgggc aggcgcgtct
     3361 ccttcaccgg ctcgaccttg agcccttcct gaatcgcctc gacgtaaggg gcgagccgcg
     3421 ctgcctcggc catctcctcg ggcgaagtgc cttcgagaga cgagccgacc aactcgccct
     3481 cgcgggcggc ccgctcggcg gagccctccg cccccgagcc acccgccttc gcgccgcccg
     3541 taagcctcgc ccagaacgag ggcgcggccg actgcgccgg gcggaacgct tcgtcgcctt
     3601 cgaggccgag cgacttgacg acgcggcgca gcagcgcggg ccgcgtcagg atttggagct
     3661 gcgtgttgaa gtaggccggg tcgttgacgg ggttgagcgc gagcgccccg cccttcgacg
     3721 cggccagcgc cgtgttgaca gtctccaagt caacctgaac ctgcgcctcg gcctcgtaga
     3781 ggtcgggctg gcgcgccatg aagagcacca ccgccccggt gcagaggaac gtgaccgcgg
     3841 cgacgaccca ccagcgtcgg cgcagcgcgc ttaagaactc gcgcagccgc tcgcggtcgg
     3901 ccgacggcgc ctccgcctct acttgataga cgggccgctg caactcgccg gcgtttatga
     3961 cttggaggtc gagggcgtcg tcgcgaatca gtttgatttc attcatggcc gcacaccgtt
     4021 tggaggggct cagcccggag agtggccggg gagcagttta ttgccggcgg ttcggggcgc
     4081 cggctcgggg ctcgctttag cgaattatct gcacggggag ccgtgctgcg gaggggacgg
     4141 cgctgcccag cagcgtccga aggaaacgct tgccgctcgc ggtcggcacc tcgacgatgt
     4201 cgttgggctg aagcgccacg tcctctgcgc gacgcttcga gatggccttg aggtcaacga
     4261 tgatttccgt cttggcgccg cccggcgcct gcctgacgac gcgaacgcgc tcgctctgcg
     4321 tgtcgggcag cgtaccgccc gccatagcta ttgcctgcga gattgtgacc ctctccttga
     4381 ggggaatcat cgagggcttg agcacgttgc cgacgacgta agcctgctcg gcctccgtga
     4441 cggtcacgat gtcgcccggc cggacgtaag ggttggcggc cgcgtcgccc aacagcgtct
     4501 cgctcagacg gaaggagctg accacagacg cctcgcccgc cccatttact tcgcccccgc
     4561 ctgctgcgca cgcgagcggc aactcggagt gcacgacctg aatgttgcgc ccggcgcgct
     4621 cggtcggccc gcccgcgaac gagagtattt cgagcagtcg cacgcgccgc tgcaactgga
     4681 agcgcccggg agaggtgacg gcgccgagca cggcaacggg cgcggagttg aactccttga
     4741 ggaagatgtc cacctgcggg ttcttcaggt atcgcaggta gcgccgggcg atctcctgcg
     4801 aaagctcggc ttcggtcagg cacgcggcgc gcaccccgcc ctcgatgaga ggcatccgaa
     4861 tcgagccgtc gccctcgacg cgcacggcct cgcgcgacag ttgcgggcgg ttgaagacgc
     4921 gcacttcgag cacgtcgccg gggcctatgc ggtatggctc gcccgcgcgc gagcccgccc
     4981 cgtcgccggc cggggcagcc gcgagcgcgc cggccgtctg cgccgcgcct acagagtaag
     5041 ccagcagcat gagcgccgcg atgcccgcgg cccttaacgc acccttgccc gccaggaaga
     5101 gacgcaggta catctcgccc ttctcctttc gcttcacttc ctcaacctcg ccgccctgcg
     5161 cgagagcaac gactcgcgca agtggttcgg gcaggccagg ttgagcaccg tgttgctcag
     5221 caacaccaac agctcctcgt tgtcgcggac gatgaggccc gcgagcggcg agtcgcccgt
     5281 cttgacgacg acgccctccc tgacccactg ccagaattgc ttctgcgtcg tccagaactg
     5341 cttgcggtcg cggcagacaa cgagcgcgtt cttccgcctc tttttttctt ttttcaacat
     5401 ggggggcgag agttcgggcg cacctatccc atagcggcgt cggcgtcggc tccgtggccg
     5461 ggcgtcgtta ccgctggagc cccgtcacgg acggggaaac cacttaacgc agggcggcgc
     5521 tattaaatgt gaaaagcggt cagttaaaaa aagccggctc ggccccgccg ggccgggcga
     5581 gctttagcta ctccgatgcc ttaaaagaaa gttacaaacg ggctgttatt ccgctgaacg
     5641 aggactaaat cgggaaggga attaaggatt acaggggccg cgacgggttg tgccgatgct
     5701 ccgtgtaaaa aacctctccg cgaagaatcc ttgatcgggg aacccgtcgt gacgccgcga
     5761 gtgaatcgcg ctgtggggcg cgaaaaagta aaaaagagac gaacgccttc tccactagag
     5821 agggcagcga gggggaaatt aactcaagaa cctatctgct gcgctgtagg tgcaaaacat
     5881 aggcccgcgg gtgtgatttg tcaatacttt tgcgcacgca gttcgggcaa ttgcggcctc
     5941 cgggccggag gggcgccggg tgtcttaatt gtgaagaaag catgtacaca gacggtacgg
     6001 ggcggccgcc gcagggcaga acgcgagctg tagcgccgcc cgctaagtca atggagcagc
     6061 ttcatttaag taggggacga ctcccagccc ctccgtggca cgcggcgcgc atacgggcca
     6121 tcagagccga accttgttct aagaaaacat ctcgcgcgtg cgggccgaga tatgcgggag
     6181 gggtctccga tgcgcctacc actacggccg agcttgacgg ctctgctgtt agccttgtcc
     6241 gccctctgtt cccagctacc cgcctccgca cagaagtctg gaaaagataa agaacgcagg
     6301 gccgcgccgg tgctatggcg cgaccccggc gacatcacgt cgcgcgacct gcgttacggc
     6361 cccggctcgg cagagcttgc gccggccgcg cctttcacct tcgtcgagga agtcaagaag
     6421 ggcgagtcgc cgaagttcaa agtccgcgac gcgcgcggcg tggagtggag cgtcaagctc
     6481 ggccccgagg cgcagtccga gaccgtctcg tcgcggatcg tctgggccgt cggctacttc
     6541 gccgaggagg cttactactt cgacgaagtg aaaatcgaga acatgccgcg gctctcgcga
     6601 gggcgggagc acgtcgccgg cgacatcgtg cgcggcgcgc gcttcgagcc gaggcgcgac
     6661 ggcgtaaagg aggggccgga gtggagctgg cgcgacagcc ccttcgaggg gtcgcgcgag
     6721 atgagcggcc tcaaggtgct gatgatcctg ctcaacaact tcgacgcgcg caagggcaac
     6781 aaccacatcc tctacacggg cacgccgcgg ggccgcgagg cgcgctacgt cgtgaccgac
     6841 ctcggctcga cactcgggcg ggccgggggg ctgggcggca agcgcgtcaa gaacgacctg
     6901 gaagctttcc tctcgacgaa gttcgtccgc gccgttgacg agaaggacgg tgtcgtcgag
     6961 ttcgactttg acacgcggcc gcgaggcttc ggccacttca cagtcctaca gcccttctac
     7021 taccgcggtg aggtgaagaa ggagaaggcg atgcgcggca tacccgtcgg gcacgcgcgc
     7081 tggatcggga ctctgctctc gcggctcacg gacgaacagc tccgcggcgc cttccgtgcg
     7141 gcgagctacg acgaggcgac gaccgagggc tacgtcaggt cactgcgcga ccgcattaac
     7201 cagttggagc ggctgcaagg cgatacgccg cccgccgagc aggccgagcg gaataggaat
     7261 aatctgtaga ggtgaagcca tgtcactacg tgaaactacc cgcctgtcac tcgtcatagt
     7321 gttcatcctg tctcttggtt tctcttcgcc ggcgcacgcc gtccagaagg ggaagggcaa
     7381 gaagaaaggg ccgccgccgg gaacgcccgt gttgtggcgc gaccacggcg acgtctccac
     7441 cctcgacctc tttaacgggc cgggcggcga ggagatgaag ccggagttga gcagcctgac
     7501 cttcatcaag gaggagacgg gcggctactc gaagaagtac cgcgtgcgcg acggtaaggg
     7561 ccgcgtgtgg gtggcgaaga taggcaagga ggcgcagccc gagacggccg cgacgcgcct
     7621 gctctgggcc gccggctacc tgcccgagat cacctacctc gccccgcgcg tgaccatccc
     7681 cggcaagggc acgttcgaga acgtccgctt cgaggcgagg cccgca
//
LOCUS       DASPKR010000612         7527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_483219, whole genome shotgun sequence.
ACCESSION   DASPKR010000612 DASPKR010000000
VERSION     DASPKR010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7527)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7527
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_483219"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..910
                     /locus_tag="VD968_16360"
     CDS             <1..910
                     /locus_tag="VD968_16360"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HYE16016.1"
                     /translation="ISLLAASFALLIGFLFAKQLTRPVRELAEGAHRIAGGDFSQRIR
                     VRGSRELCELGESFNQMTGRLESYIEDLRRAAEENRQLFIGTVKALAAAIDGKDPYTR
                     GHSERVARFSVAIAERLGLPDAEIEQLRISALLHDVGKIGIDDSVLKKPAALTPEEFE
                     MMKQHPQKGYKIMSQIPAMRDFLPGMYMHHEMMDGNGYPQGLKGEQIPVQARIVSVAD
                     TFDAMTTDRPYQKGMTLEDALARIKSFVGTRYDERVVAALVEACEQGQISPGRVRLSK
                     RARELANSLYVRPAATTGAQEPTTAV"
     gene            1067..1531
                     /locus_tag="VD968_16365"
     CDS             1067..1531
                     /locus_tag="VD968_16365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16017.1"
                     /translation="MRKLLLLVVPFLLVAGAEARAKNPPGDVLGVRLDMSETEARRRL
                     DKIGRRPGMERMKQEVWEVRDPLISHVIVRFRDGKVRWVIAQARAEGPRRMRYADVAS
                     TARAQHKTDGTNHTYIWRVRARRGRPGYVVVAGGSDPQYLTSYRLLRTFDDQ"
     gene            1755..5372
                     /locus_tag="VD968_16370"
     CDS             1755..5372
                     /locus_tag="VD968_16370"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HYE16018.1"
                     /translation="MARQSHLPNSNAIQGSQKGRRSRAGLRVVVVLALAAALCAAVAL
                     EPSPRTAQAVTPTVLYFHGNTHDSGGAPPRPCTGDGRTDVNGCGGPYLSANPVLDTAP
                     AARWETPSAAADGTVARNLYDPNWVWNSGPVRLGGEMSVDWWASCSACGPGIGNADWM
                     IRVWADGVKKFEQRVRATPDLPNVPKLLTTKVFLPEIVANQNVVLQVDPVFIDTQNNT
                     IIYYDSQAAQTPCPGATAGSSVPCNSRVTMPVLAPGEPVPTPTPDTAGVTYIKGGIEF
                     SPSVPLHAPATVRDGEPSIRVDKFGNTYVAGIRGVPAGCDLWYFDLRPTVGGQPNPNY
                     DPFMRNPAYRGQPDAFSGEAEPSLLADGGGDVDLAVSFPESDTEDPANPPTLSFTSLA
                     LANISVARSKDRGVTFEKNPAGNVTGGLPIDDRQWFEAVGPNTVYLLYRTVAPAVSQI
                     QRSNDGGLTFGPARTAGAIGQVGYIDVHKATGTVYVSGSSGQVCVGTPATPQDEPLTY
                     SCKQAGPTNGANLFFVVKVADDGTPNGTAYVNYSDGTNIYLAYSTDKGQTWSKPVRIN
                     DGPETAKNLLPWMETGPVPGSVGVVWYGTANPDNNNNADWNVFFAQVTGANTPNPVIR
                     QVKAGDHVHHASNISLAGLNPTATDVNRNLIDYFQVAFDPTGAAVIAYTDDHNDYDGN
                     TFVTRQISGPNINGGSVPAPVEGSALPPPAGFDECAPQVTDFALDARSQTAILHIEEA
                     VDITSIKYSTEGSAANPVLVTQMKVSGDLSTLPPAAIWRVNFAANAPNSVMSPTGLYT
                     FGTADRGDQFYMQAQTDAAGARTYRFGTAARNGNGGMTYTDRGAADFGSFDPATKTVT
                     LKVALSKLNPFVKAGNPALGPGTVLTGLRGQANIGSNASGRDPRSDATRGGTQYVINR
                     APTAALAASPAVGGPVLTVNFDASGSSDPDASCAPLSYRFDFGDGSPAVTQSSPTAEH
                     TYTQLGTYTATVTVTDASGFQSNVASASVEVIEPGVPLSDFALATPSTGTKTVWACRG
                     WTGQVILSAPAPAGGQVVKIENSHPKANFPESVTVPEGMTSAHFNYTADAVTPAEQLT
                     AQVVARSGGVSVARNLTVRPIGISSVTLSPQTVRGGQGVQASVSLECGAAPGPVDVKL
                     VSLDPRVADVELPETVTLQPGQTTATFNVTTYPVALQKKVTLRATANGSVKNATLTVN
                     P"
     gene            5563..6897
                     /gene="ftsY"
                     /locus_tag="VD968_16375"
     CDS             5563..6897
                     /gene="ftsY"
                     /locus_tag="VD968_16375"
                     /inference="COORDINATES: protein motif:HMM:TIGR00064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HYE16019.1"
                     /translation="MAFWRRKKEDRFVTLGLNEPAAKPSEGATRADDARPRLEPPASE
                     QGAETRPAAPAQPAIEPVPTGAPPTPEPARETGLTDARKTEVIESPRPAAPEPARPSP
                     QRPVAPSRSAFSSSILGLDRSAEELEAEVAALEQTYAARFTRAISATRDSLSEHIDSV
                     FQGRKRIDAELLDELEEALIAADIGVQTTLAILDNVRRGVTRKEINDLDALKQAIKNE
                     LLSILRESEKQGVGSEESVPENISPYVIMVVGVNGVGKTTTIGKLAQRIKAEGNDVLI
                     CAADTFRAAASDQLAIWAERTGVPLIQQKPGTDPAAVLFDALKAAKARNSDVLIVDTA
                     GRLHNKSNLMAELEKMKRVAGREVEGAPHETLLVLDAVTGQNGLEQARQFLKTANVTG
                     IVLTKLDGTAKGGIAVAIARELRLPIRYAGIGEKVDDLVIFDPEQYVNGLFA"
     gene            6914..>7527
                     /gene="ribD"
                     /locus_tag="VD968_16380"
     CDS             6914..>7527
                     /gene="ribD"
                     /locus_tag="VD968_16380"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: protein motif:HMM:TIGR00326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HYE16020.1"
                     /translation="MEAETRNLDERLMARALELAARGAGQVSPGPLVGCVIAGRGGEV
                     LGEGFYIYEGVRHAETLALEEAGELARGATAYVSLEPHAHTGRTPPCTEALISAGVAR
                     VVAPIEDPNPLVSGRGFARLREAGVAVTIGVLEREAERLNEKYTHSIRHGRPFVHLKL
                     ACSLDGRIATSTGDARWITGEESRARVHLLRRENDAVLVGAGTVA"
BASE COUNT         1324 a         2700 c         2455 g         1048 t
ORIGIN      
        1 cataagcctg ctcgcggcca gcttcgcgct gctcatcggc ttcctcttcg ccaagcagct
       61 cacgcgcccc gtgcgcgagc tggccgaggg cgcgcaccga atagcgggcg gcgacttctc
      121 gcagcgaata cgagtgcgcg gcagccggga gctttgtgag ctgggcgagt ctttcaacca
      181 gatgaccggc cggctcgaaa gctacatcga agacctccgg cgagcggccg aggagaaccg
      241 gcagctcttc ataggcaccg tcaaggcgct cgcggccgcg attgacggaa aagaccctta
      301 cacgcgcggc cactcggagc gtgtcgcgcg cttctccgtc gccatcgcgg agcggctcgg
      361 cctgcccgac gcagagatcg agcagctaag gataagcgcg ctgctgcacg acgttggcaa
      421 gatcggcatt gacgactcgg ttctgaagaa gcctgcggcg ctcacgcccg aggagttcga
      481 gatgatgaag cagcacccgc agaagggcta caagatcatg tctcagatcc cggcgatgcg
      541 cgacttcctg cccggcatgt acatgcacca cgagatgatg gacggcaacg gctacccgca
      601 gggcctcaag ggcgaacaga tacccgtgca ggcgcgcatc gtctcggtcg ccgacacctt
      661 cgacgcgatg acgaccgacc gcccctacca gaagggcatg acgctcgaag acgcgctcgc
      721 ccgcatcaag tctttcgtcg gcacgcgcta cgacgagcgt gtggtcgcgg cgctggtcga
      781 ggcctgcgag caggggcaaa tctcgccggg gcgcgtgcgc ctctcgaagc gcgcgcgcga
      841 gcttgcgaac tctctatacg tgaggccggc agcgacgacc ggcgcgcagg agccgaccac
      901 cgccgtctga gccgaattat aaattttgcg ccgcccatgt gagcgccggt tggtcgcctt
      961 agaccgccga cgctctttgg cttttcgggc cgggcggggc ttgtgctgcg gcctcccgtt
     1021 ggctataaat tcggggtgtg ggagcactga cccggaggtg aaggtgatga gaaagctgct
     1081 gttgctcgtc gtgccgttct tgctagtcgc gggggccgag gcccgcgcaa agaacccgcc
     1141 gggcgacgtg ctcggcgtgc ggctcgacat gagcgagacg gaggcgcgca ggcggctcga
     1201 caagatcggc cgccggccgg gcatggagcg gatgaagcag gaggtctggg aggtgcgcga
     1261 cccgctcatc tcccacgtta tcgtgcggtt cagggacggc aaggttcgct gggtcatcgc
     1321 gcaggcgcgc gccgaagggc cgcgccgcat gcgctacgcg gacgttgcga gcacggcccg
     1381 cgcccagcac aagaccgacg gcacgaatca cacatacata tggcgcgtgc gcgcgcggcg
     1441 cggccgcccc ggctacgtcg tggtcgcggg cgggagcgac ccgcagtacc tgacctccta
     1501 caggctcctt cgcaccttcg acgaccagtg actgccgccc gcgcccggct cctcatctct
     1561 ctaaatcaag gattttcctc accttagccg atctcccggc ggcctctgcg ccgcctcaag
     1621 ttttcctcaa ccgcccggca gtagccttca gataatcaag cagacctcgc gtggcgcaga
     1681 ggccgcacgg caggccacgg aagaggcccg gccggccgtc cggcatccca catttctgaa
     1741 ggagaccgaa agccatggcc cgtcaatcgc acctgcccaa ctcaaacgca atccagggct
     1801 cgcaaaaagg ccgccgctca cgggcgggcc tgcgtgtcgt cgtcgtgctg gcgctggcgg
     1861 ccgccctgtg cgcggccgtc gcgctggagc cttcgcccag gactgcgcag gcggtcacgc
     1921 ccaccgtgct ctacttccac ggcaacacgc acgattcggg cggcgccccg ccgaggccct
     1981 gcacgggcga cggccgcacg gacgtcaacg ggtgcggcgg gccgtacctc tcggccaacc
     2041 ccgtgctcga caccgcgccg gccgcccgct gggagacgcc gagcgccgcc gcggacggca
     2101 cggtcgcgcg caacctctac gacccgaact gggtctggaa ctccggcccc gtgcggctcg
     2161 gcggggaaat gagcgtggac tggtgggcct cctgctcggc gtgcggcccc ggcatcggca
     2221 acgccgactg gatgattcgc gtctgggccg acggggtcaa gaagttcgag cagagggtca
     2281 gggcgacgcc cgacctgccg aacgtcccca aactgctcac tacgaaagtg ttcctgccgg
     2341 agatagtagc gaaccagaac gtcgtccttc aggttgaccc ggtcttcata gacactcaga
     2401 acaacaccat aatctattac gactcgcagg cggcgcagac gccctgcccc ggcgcgaccg
     2461 ccggcagcag cgtgccctgc aactctcgcg tgacgatgcc cgtgctcgcg cccggcgagc
     2521 ccgtgccgac gccgacgccc gatacggccg gcgtcacata catcaaaggc ggcatcgagt
     2581 tcagccccag cgtcccgctg cacgcccccg cgacggtgcg cgacggcgag ccctcgatac
     2641 gcgttgacaa gttcggcaac acttacgtcg ccggcattcg cggcgtcccg gcgggctgcg
     2701 acctctggta cttcgaccta cggcccacgg tcggcgggca gccgaacccc aactacgacc
     2761 cgttcatgcg taacccggcc taccgcggcc agcccgacgc cttctccggc gaggccgagc
     2821 cctcgctcct ggccgacgga ggcggcgacg ttgacctcgc cgtgagcttc ccggaaagcg
     2881 acacggaaga ccccgcgaac ccgcctacgc tctcgttcac gagcctcgcg ctcgctaaca
     2941 tctcggtcgc gcgctcgaaa gaccgcggcg taaccttcga gaagaacccg gcggggaacg
     3001 tcacgggcgg cctgcccatt gacgaccgtc agtggttcga ggccgtcggg ccgaacacag
     3061 tctatctgct ctacaggacg gtagcgccgg ccgtctcgca gatacagcgc tcgaacgacg
     3121 gcggcctgac cttcgggccg gcgcgcacgg ccggcgccat cgggcaggtc ggctacatag
     3181 acgttcacaa ggccacgggg acggtctatg tcagcggctc ctcggggcag gtctgcgtcg
     3241 gcacgccggc cacgccgcag gacgagccgc tcacctactc gtgcaagcag gccgggccta
     3301 cgaacggcgc gaacctcttc ttcgtcgtga aggtcgccga cgatggcacg cccaacggca
     3361 cggcttacgt caactactcc gacggcacga acatctacct cgcctactcg accgacaagg
     3421 ggcagacgtg gagcaagccc gtccgcatca acgacgggcc ggagacggcg aagaacctgc
     3481 tgccctggat ggagacgggg ccggtgccgg gctcggtcgg cgtcgtgtgg tacggcaccg
     3541 cgaacccgga taacaacaac aacgccgact ggaatgtctt cttcgcgcag gtgacgggcg
     3601 ccaacacgcc caaccccgtc atacggcagg tcaaggcggg cgaccacgta caccacgcgt
     3661 cgaacatctc gctcgcgggc ctgaacccca cggcgacgga cgttaaccgc aacctgattg
     3721 actacttcca ggtcgccttc gacccgaccg gcgctgccgt catcgcctac accgacgacc
     3781 acaacgacta cgacggcaac accttcgtca cgcgacagat ttcggggccg aacatcaacg
     3841 gcggcagcgt cccggcgccc gtcgagggca gcgccctgcc accgcccgcc ggcttcgacg
     3901 agtgcgcgcc gcaggtgaca gacttcgcgc tggacgcgcg ctcgcagacc gccatactcc
     3961 acatcgagga ggcggttgac atcacttcga ttaagtattc gaccgagggc agcgcggcca
     4021 acccggtgct cgtcacgcag atgaaggtgt cgggcgacct gtccaccctg cccccggccg
     4081 caatctggcg cgttaacttc gcggccaacg cgccgaactc agtgatgagc ccgaccgggc
     4141 tctacacctt cggcacggcc gaccgcggcg accagttcta catgcaggcg cagacggacg
     4201 ccgcgggcgc gcgcacctac cgcttcggca cggccgcgcg caacggcaac ggcggcatga
     4261 cctacaccga ccgcggcgcg gccgacttcg ggtcgttcga cccggcgacg aagaccgtga
     4321 cgctgaaggt cgcgctctcg aaactcaacc cgttcgtcaa ggcgggcaac cccgccctcg
     4381 gccccggcac ggtgctgacg ggcctgcgcg ggcaggccaa cataggcagc aacgcgtcgg
     4441 gccgcgaccc gcgctccgac gcgacgcgcg gcggcacgca gtacgtcatc aaccgcgcgc
     4501 cgacggccgc tctcgccgcc tcgcccgcgg tcggcggccc cgtgctgacg gtcaacttcg
     4561 acgcatccgg gtcgagcgac ccggacgcct cgtgcgcgcc gctctcctac aggttcgact
     4621 tcggcgacgg cagccccgcc gttacgcagt cgagccccac ggcagagcac acctacacgc
     4681 agctcggcac ctacacggcg acggtgacgg tgactgacgc gagcggcttc cagagcaacg
     4741 tggcgagcgc gagcgtcgag gtcatagagc ccggcgtccc gctctccgac ttcgcgctgg
     4801 ctacgccctc gaccggcact aagaccgtct gggcgtgccg cggctggacg gggcaggtga
     4861 ttctctcggc ccctgcgccg gccggcgggc aggtcgtgaa gattgagaac tcgcacccga
     4921 aggcgaactt cccagagagc gtcaccgtgc cggagggcat gacctcggcc cacttcaact
     4981 acacggccga cgccgtaacg cctgcagagc agttgaccgc gcaggtcgtg gcgaggtcgg
     5041 gcggcgtctc agtcgcgcgc aaccttacgg tgcggccgat agggataagc tcggtgacgc
     5101 ttagcccgca gacggtgaga ggcgggcagg gcgtgcaggc gagcgtgagc ctcgagtgcg
     5161 gcgccgcgcc cggccccgtg gacgtgaagc tcgtctcgct cgacccgcgc gtggccgacg
     5221 tggagctgcc ggagacggtg acgttgcagc ccggccagac cacggccacc ttcaacgtca
     5281 cgacctaccc ggtcgccttg cagaagaagg tgactctgag ggccaccgcc aacggctccg
     5341 tcaagaacgc gacgctcacg gtcaacccgt aggcgctcgc accttccatc gctcaagccc
     5401 gcccggggcg gccccgcgac taacctcgcg gggccgcccc ggcggttttt tgcccgctca
     5461 aggccggcgc ggcgcacagc ttttgtcgcg gcccggctct taacgttata atctccgact
     5521 ttaaataagg catcacatca gtcaaaggta atcatccgtc gaatggcatt ctggagacgc
     5581 aagaaggaag accgcttcgt cacgctcggg ttgaacgagc cggcggcgaa gccctcggaa
     5641 ggagcgacgc gcgccgacga cgcgaggccc cgcctggagc ccccggcctc agagcagggc
     5701 gcagagactc ggcccgccgc gcccgcacag cccgccatcg agcccgtccc gacgggcgca
     5761 ccgcccacgc ccgagcccgc gcgcgagacg ggcctgaccg acgcgcgcaa aactgaagta
     5821 atcgagagcc ctcgcccggc ggcgcccgag ccagcccgcc cctcgccgca gaggccggtc
     5881 gcgccttcgc gctcggcctt ctcgtcctcg atcctcggcc ttgaccgctc ggccgaagag
     5941 cttgaggccg aagtcgccgc gctcgaacag acctacgcgg cccgcttcac gcgcgccatc
     6001 tcggccacgc gcgactcgct ctccgagcac attgacagcg tcttccaggg gcgcaagcgg
     6061 attgacgccg agctcctaga tgagctggaa gaggcgctca tcgcggccga cataggcgta
     6121 cagaccacgc tcgccatact cgacaacgtc cggcgcggcg tcacgcgcaa ggagataaac
     6181 gacctcgacg cgctcaagca ggcgataaag aacgagctgc tctccatact ccgcgagtcc
     6241 gagaagcagg gcgtcggctc cgaggagagc gtgccggaga acatctcgcc ctacgtcata
     6301 atggtcgtgg gcgtgaacgg cgtcggcaag acgacgacca tcggcaagct cgcgcagcgc
     6361 atcaaggccg agggcaacga cgtgctcatc tgcgccgcag acaccttccg cgccgccgcc
     6421 tccgaccagc tcgccatctg ggccgagcgc accggcgtcc ccctcataca gcagaagccg
     6481 gggacggacc cggcggccgt cctcttcgac gccctcaagg ccgctaaggc gcgcaactcc
     6541 gacgtgctca tcgttgacac ggccgggcgc cttcacaaca agtcgaacct gatggccgag
     6601 ctggagaaga tgaagcgcgt ggcgggccgc gaggtcgaag gggcgccgca cgagaccctt
     6661 ctcgtcctcg acgccgtgac ggggcagaac gggcttgagc aggcccgcca gttcctcaag
     6721 accgcgaacg tgacgggcat cgtgctcacc aagctcgacg ggacggcgaa gggcggcatc
     6781 gccgtcgcca tagcccgcga gcttcgcctg ccgatacgct acgccggcat aggcgagaag
     6841 gttgacgacc tcgtcatctt cgaccccgag cagtacgtca acggcctctt cgcataaatt
     6901 ccagacttga gacttggaag ctgaaacccg gaaccttgac gagcgtttga tggcgcgcgc
     6961 tctggagctt gcggcgcgcg gcgcgggcca ggtgagcccc ggcccgctcg tcggttgcgt
     7021 catcgcggga cgcggcgggg aggttctcgg cgagggcttc tacatctacg agggcgtgcg
     7081 ccacgccgag acgctcgcgc tcgaagaggc cggcgagctt gcgcgcggcg cgaccgccta
     7141 cgtctctttg gagccgcacg cgcacacggg ccgcacgccg ccctgcaccg aggcgctgat
     7201 aagcgcgggc gtcgcgcgcg tcgtcgcgcc gattgaagac cctaacccgt tagtctcggg
     7261 ccgcggcttc gcgcggctgc gcgaggcggg cgtcgccgtc acgatcggcg tgctcgagcg
     7321 cgaagccgag cggctcaacg agaagtacac gcactccatc cgccacggcc ggcccttcgt
     7381 ccacctcaag ctcgcgtgct cgctcgacgg gcgcatagcg acgagcacgg gcgacgcgcg
     7441 ctggataacg ggcgaggagt cgcgcgcccg cgttcacctg ctccgccgcg agaacgacgc
     7501 cgtgctcgtc ggcgcgggga ccgtcgc
//
LOCUS       DASPKR010000613         2248 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1908719, whole genome shotgun sequence.
ACCESSION   DASPKR010000613 DASPKR010000000
VERSION     DASPKR010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2248)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2248
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1908719"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..1252)
                     /gene="trpD"
                     /locus_tag="VD968_16385"
     CDS             complement(152..1252)
                     /gene="trpD"
                     /locus_tag="VD968_16385"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HYE16021.1"
                     /translation="MDDETQGRGARPSWLTPGAARRGDPQEGASVRAYLRRLMRGENL
                     RREEAESFLGALLDGGATDSQIGAALVALAVKGETVEELAGLASAMRARARRVSARHE
                     RFIDTAGTGSSAAKTFNVSTAAAFVIAGAELPVAKHGSRAATSLSGSADVLTALGVNV
                     TAPPEVSERCLNEIGVCFMFAPLYHGATARVAGVRRELGVHTTFNLLGPLTNPAGAPR
                     QLIGVWHEALVEPIARTLAALGSERAWVVHGLDGLDEVTLNGPTKVAEVCEGGVRAFE
                     VTPEEFGLRRSALDSLRGGDAEANARVIREVLSGARRDAARDLVVVNAASALFVGGEA
                     GDLREAAALAGRSIDEGAALPKLELLAEETNR"
     gene            complement(1265..1831)
                     /locus_tag="VD968_16390"
     CDS             complement(1265..1831)
                     /locus_tag="VD968_16390"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: protein motif:HMM:TIGR00566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HYE16022.1"
                     /translation="MLLVIDNYDSFTYNLVQYLGELGADVLVRRNDEVTVEEVERELR
                     PERIVVSPGPGTPDGAGVTLDLIGLLAGHVPLLGVCLGHQAIGQVFGGRVVRAPAPVH
                     GKPAEICHDGKTIFEGLEYRFTAGRYHSLVVERETLPACLEVSATTPDGVIMGLRHRT
                     LKVEGVQFHPESILTTEGKRLLANFLRL"
     gene            complement(1838..>2248)
                     /locus_tag="VD968_16395"
     CDS             complement(1838..>2248)
                     /locus_tag="VD968_16395"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HYE16023.1"
                     /translation="GSTALMYAVAKNREEFIDMLLDAGADINASDEGVGTALTWAVYY
                     DRTPLAEKLLARGAEPNAVNKVGGTPLMWAAIKGNERAVRMLLERGADPSAKDNDGKT
                     ALAWARENRRDEVVKILQAAGRRPAAAASPPPAR"
BASE COUNT          315 a          809 c          777 g          347 t
ORIGIN      
        1 cgagcgccgc gcggaaggcg tgcggcgagg cgacggcccg cacggcgagc gcttcgctgc
       61 ggacgtcgga cagggggcgc cgcgccttct ccgcggcgag acgcgcgcgc ctctggctca
      121 ttatccgctc taaaaacccg ccggcgccca tctaacggtt agtctcctct gccagcagtt
      181 cgagcttggg gagagcggcg ccttcgtcaa tgctccgccc ggcgagcgcc gccgcctcgc
      241 gcaaatcccc cgcctcgccg ccgacgaaga gagccgaggc ggcgttgacg acgacaagat
      301 cgcgcgcggc gtcgcgccgc gcgcccgaga gcacttcgcg tatcacgcgc gcgttcgcct
      361 cggcgtcgcc gccgcgcagg gagtcgagcg cagagcgacg gagcccgaac tcctccggcg
      421 tcacctcgaa cgcgcgcacg ccgccctcgc agacttcggc gaccttcgtc ggcccgttca
      481 gagtcacttc gtccaggccg tcgagaccgt gcacgaccca tgcgcgctcg ctcccgagcg
      541 cggcgagcgt gcgcgcaatc ggctcgacaa gggcctcgtg ccagacgcct atcaactgcc
      601 gcggcgcccc cgcggggttc gtgagcgggc cgagcaggtt gaaagtggtg tggacgccaa
      661 gctcgcggcg cacgcccgcg acgcgcgccg tcgcgccgtg gtagagcggc gcgaacatga
      721 agcagacgcc tatctcgttc aggcacctct cggagacttc cggcggggcc gtgacgttga
      781 cgccgagggc cgtgagcacg tcggcgctcc ctgataggct cgtggcggcg cggctaccgt
      841 gcttcgccac gggcagttca gcgcccgcga tgacgaaggc cgcggccgtc gagacgttaa
      901 aagtcttcgc ggcgcttgag cccgtgcctg ccgtgtctat gaagcgctcg tgccgcgcgc
      961 tcacgcgccg tgcgcgggcg cgcatcgcgg aggccaggcc cgccagttcc tcgaccgtct
     1021 cgcccttgac ggccagcgcg acgagggccg cgcctatctg cgagtcggtc gcgccgccgt
     1081 cgagcagggc gcctaagaac gactcggcct cctcgcgccg gaggttctcg ccgcgcatga
     1141 gccttcgcag gtacgcgcgc accgacgcgc cctcctgcgg gtcgcccctc ctcgccgcgc
     1201 ccggcgtcag ccacgaaggc cgcgcccccc gcccttgtgt ttcgtcatcc atccgtaaaa
     1261 gctctcagag tcggaggaaa ttcgcgagca ggcgtttgcc ctcggtcgtg aggatggact
     1321 ccgggtggaa ctgcacgccc tcgaccttca gcgtgcggtg gcgcaggccc atgatgacgc
     1381 cgtcgggggt cgtggctgag acttcgaggc aggccgggag cgtctcgcgc tcgacgacga
     1441 gcgagtggta gcggccggcg gtgaagcggt actcgaggcc ctcgaagatg gtcttgccgt
     1501 cgtggcaaat ctcagccggc ttcccgtgga cgggcgcggg cgctctaacg acgcgcccgc
     1561 cgaagacctg cccgatggcc tggtggccga ggcacacgcc gagcaagggc acgtggcccg
     1621 ccagcagccc tatcaggtcg agcgtgacgc cggcgccgtc cggcgtcccc ggccccggcg
     1681 agacgactat gcgctcgggc cttagctcgc gctcgacttc ctcgacagta acctcgtcgt
     1741 tgcggcgcac gagcacgtcg gcccctagct cgccgaggta ctgcacgagg ttgtaagtga
     1801 acgagtcgta gttgtctatg acgaggagca tcgcgcgtca gcgtgccggc gggggggatg
     1861 ccgcggcggc gggccgcctc ccagccgcct gtagaatctt cacgacctcg tcgcggcggt
     1921 tctcccgtgc ccacgcgagc gcggtcttgc cgtcgttgtc tttggccgag gggtcagcgc
     1981 cgcgctccag gagcatccgg acggcgcgct cgttcccctt tatagccgcc cacatcagcg
     2041 gcgtgccgcc gaccttgttc acggcattcg gttctgcgcc gcgcgcgagg agcttttctg
     2101 ccagcggcgt gcggtcgtaa tagacggccc acgtgagcgc ggtgcctacg ccctcgtcag
     2161 aggcgtttat gtcggcgccc gcgtcgagca gcatgtcaat aaactcctcg cggttcttgg
     2221 cgacggcgta catgagcgcc gtcgagcc
//
LOCUS       DASPKR010000614         2108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1517944, whole genome shotgun sequence.
ACCESSION   DASPKR010000614 DASPKR010000000
VERSION     DASPKR010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2108)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1517944"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..329
                     /locus_tag="VD968_16400"
     CDS             <1..329
                     /locus_tag="VD968_16400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16024.1"
                     /translation="FLYRVTPGVAEKSYGVYAAKLAGLPRPVVRRAEELLGEYEAGHV
                     GAGREEAEPLDELESAAWAHASRLARELLDTDVNSLSPVEALMKLFELRKMAEGEKNL
                     KALKTA"
     gene            complement(346..1278)
                     /locus_tag="VD968_16405"
     CDS             complement(346..1278)
                     /locus_tag="VD968_16405"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HYE16025.1"
                     /translation="MASTSEQPHHPVQLTREETKLKQTAARLSILAAAFLIVLKTATG
                     WVTGSISVWASLLDSAMDIIASTINFFAVRAASLPPDDDHLYGHGKAESLAGLFQAAV
                     ITASGLFLVREAVLRIVTPRATASEWVGVGTMVVAAAVSVLLVARLRSIARQTDSPAL
                     SADAAHYASDVYANGAALVALATVALTGWRLADPLISLAISGYILHSAVQVGRESVDV
                     LMDRRLPPEVDDRVAEVVSRFEPQGVINFHDLRTRRSGSVKFIDLHLAVRRDLSFEAA
                     HDLTVRVLRAIEAEIPRSRVQIHTDPWDEEQSRE"
     gene            complement(1304..>2108)
                     /locus_tag="VD968_16410"
     CDS             complement(1304..>2108)
                     /locus_tag="VD968_16410"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYE16026.1"
                     /translation="VAGAAAAFLAISRMRGRLSFPARADLARFALYGLLGVTLNQLLF
                     VKGLALSTVVNATLLSTAIPVFTLLVSTLLGYEKLTARAALGTVIAAAGVAYLVNPFE
                     ADLSGGKAAGNALLVANTLAYGAYIAVSQDAFRRYGALTAMTWVFAFGSLMTVPVGGY
                     NLWREPPHDAGWAVWLCVAYIVAVPTVGAYYLNAWALERVAPSTVAVYIYLQPLIAFS
                     VAPLVLGAEESWSGRTFVAAGLIFAGVAVVTLRSRVMEEVSEHPDALGH"
BASE COUNT          362 a          661 c          782 g          303 t
ORIGIN      
        1 tctttctcta ccgcgtgacg cccggcgtgg ccgagaagag ctacggcgtc tatgccgcga
       61 agctcgcggg gctgccgcgc cccgtggtgc gccgcgccga agagctgctc ggcgagtacg
      121 aggccgggca cgtcggcgcg gggagggaag aggccgagcc gctcgacgag ctggagtcgg
      181 ccgcgtgggc tcacgcatcc cgcctcgcgc gtgagctgct cgacacggac gtgaactcgc
      241 tctccccggt cgaggcgctc atgaagctat tcgagctgcg gaagatggcc gagggcgaga
      301 agaatctgaa agcgctcaag accgcctgag actccccgat cactactact cgcggctctg
      361 ttcttcgtcc caggggtctg tgtgaatctg tacgcgcgag cgtgggattt cggcctcaat
      421 ggcgcgcagc acacgcacgg tcaggtcgtg tgcggcttcg aagctcaggt cgcggcggac
      481 tgcgaggtgc aggtcaatga acttgacgga gccggagcgg cgtgtgcgca ggtcgtgaaa
      541 gtttatgacg ccctgcggct cgaagcggct gaccacttcg gcgacgcggt cgtcaacctc
      601 gggcgggagg cgcctgtcca tcagaacgtc aacggactcg cgcccgacct gcacggccga
      661 gtggagtatg tagcccgata tggcgaggga gatgagcggg tctgcgagcc gccagccggt
      721 cagggcgacg gtggcgagcg cgacgagcgc ggcgccgttc gcgtaaacgt ccgaggcgta
      781 gtgcgcggcg tcggcgctga gcgcgggcga gtcggtctgc cgcgcaatcg agcgcaggcg
      841 cgcgacgagg agcacgctga ccgcagccgc cacgaccatt gtcccgaccc ccacccactc
      901 gctcgccgtc gcccgaggag tgacgatgcg cagcaccgcc tcgcgcacga ggaacaggcc
      961 ggaggcggtg atgaccgcgg cctggaagag ccctgcgagc gactcggcct tgccgtgccc
     1021 gtagaggtgg tcgtcgtcgg gcgggagcga ggcggcgcgg accgcgaaga agttgatcgt
     1081 cgaagcgatg atgtccatcg ccgagtcgag cagcgacgcc cagacgctta tcgagcccgt
     1141 cacccacccc gtagccgtct tgagcacgat gaggaaggcc gccgccagaa tcgagagacg
     1201 cgcggccgtc tgtttgagct tcgtctcctc gcgcgtgagt tggacggggt ggtgtggttg
     1261 ttcgctggtc gaggccataa agggcgagcg cctttctaac aaatcagtgg ccgagcgcgt
     1321 ccgggtgctc ggagacctcc tccattacgc gcgagcgcag cgtgacgacg gcgacgcccg
     1381 cgaagatgag cccggcggct acgaaagtgc gcccgctcca actctcctcc gcgccgagca
     1441 cgagcggcgc gacggagaag gcgatgagcg gctgtaggta tatgtaaacc gcgacggtgc
     1501 tcggcgcgac gcgctccaga gcccacgcgt tcaggtagta ggcgcccacg gtcgggacgg
     1561 cgacgatgta ggcgacgcag agccagaccg cccacccggc gtcgtgcggc ggctcgcgcc
     1621 agaggttgta gccgcctacc ggcacagtca taaggctccc gaaggcgaag acccaggtca
     1681 tcgccgtaag cgcgccgtac cggcggaagg cgtcctgcga gacggcgatg taggcgccgt
     1741 acgcgagcgt gtttgcgacc agaagggcgt tgcccgcggc cttgccgccg gagaggtcgg
     1801 cctcgaaggg gttcacgagg taggcgacgc ctgcggcggc tatgactgtg ccgagcgccg
     1861 cgcgggccgt aagcttttcg tagccgagaa gggtgctcac caggagcgtg aagacgggga
     1921 tggccgtgct gaggagcgtc gcgttgacta ccgtcgagag ggcgagcccc ttgacgaaga
     1981 gtagctggtt aagcgtgacg ccgagcaggc cgtagagcgc gaacctcgcg aggtctgcgc
     2041 gcgcggggaa ggagagccgg cccctcatgc ggcttatggc gaggaaggcc gcggccgcgc
     2101 cggccacg
//
LOCUS       DASPKR010000615         2676 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_227513, whole genome shotgun sequence.
ACCESSION   DASPKR010000615 DASPKR010000000
VERSION     DASPKR010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2676)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227513"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VD968_16415"
     CDS             complement(<1..269)
                     /locus_tag="VD968_16415"
                     /inference="COORDINATES: protein motif:HMM:TIGR00149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HYE16027.1"
                     /translation="MEIINVRSREREELVEITDEVRRRVRQSGVREGVCFLFVRHTTA
                     GLTVNENADPDVARDMLHALRTLVPQHGMGFRHGEQNSDAHIKASL"
     gene            complement(286..2388)
                     /locus_tag="VD968_16420"
     CDS             complement(286..2388)
                     /locus_tag="VD968_16420"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HYE16028.1"
                     /translation="MTAAGLHELLAGASRWLWPAAADHLWQASLFAALVFAVTLCLRG
                     RGRARLRHSLWLVAAAKFALPSALFAALVSAAGMDASRLFGAARGPGGVTVVRQLAAP
                     LAPFSDTLEVTVSAAAPHGSELYCALTLAWGLGLAGLGAVGLARRREFLRALRAGRES
                     YSGQEFEAMERARARMGLKKEVLLVLSPLRTEPGVWRTRRPVVIVPELIAEQLDDEEL
                     ESVMLHELAHVERRDNLFGKLQTALNCVLWFHPLVWLIQARLLAEREHACDERVLEVG
                     GRPGAYASSILKVVRFCSGWRVAGVSGAAAGPNLRRRIEMIMRESEEAGARRWQRLLP
                     GAAAFAALALTAAAGLMAAAPGARAALMPGEGADGAEGQGGRAPRVRARALPPRGEEG
                     PAVKELAQAPDAAVTTENAAGAPVVISEARMKLITREQLKRADEEGADSFHDEGVDDS
                     DYFVTLPSVTITNVSSRAVKEVGISFASGGEEEMVMLGHPVRVGPGETVTIRSEWGRL
                     NVIMPGNSANVKLGWVEFTDGTQWGGVPRPPRPARPSEPPQPSGASARVDVTHDARAV
                     VAGEGRGEPSAAVARGGGAGTNEGSGAAVAAGGDGGGRPLRDNAVSVPPPKYPPIARA
                     ARAQGVVKVQVAVDEEGRVVAARAVSGHPLLQEAAAEAARAAQFKPTLLEGKPVKVSG
                     VISYNFVLGEKEEERREP"
     gene            complement(2385..>2676)
                     /locus_tag="VD968_16425"
     CDS             complement(2385..>2676)
                     /locus_tag="VD968_16425"
                     /inference="COORDINATES: protein motif:HMM:NF015898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HYE16029.1"
                     /translation="AVRRVKKIGNAHIFEPVVTRKAAARRIVDDLLAFFGGSPRTLMA
                     QLVEAGRLTLDDLREAELTLERLEAERRAAGGGEGEAGGEVVRGKGRERGRR"
BASE COUNT          361 a         1072 c          870 g          373 t
ORIGIN      
        1 aggctcgcct tgatgtgcgc gtccgagttc tgctcgccgt ggcggaagcc catgccgtgc
       61 tgcggcacga gcgtgcgcag ggcgtgcagc atgtcgcgcg cgacgtccgg gtcggcgttc
      121 tcgttgaccg tgaggccggc cgtcgtgtgg cgcacgaaca ggaagcagac tccctcgcgc
      181 acgcccgact ggcgcaccct ccgccgcacc tcgtccgtta tctcgaccaa ctcctctcgc
      241 tcgcgcgagc gcacattgat tatctccata agctcgccac gccgcttaag gctcgcgccg
      301 ctcctcctcc ttctctccga gcacgaagtt gtagctgatg acgccggaga ccttgacggg
      361 cttgccttcg aggagcgtgg gcttgaactg cgcggcgcgc gcggcctcgg ccgccgcctc
      421 ctgcagtagc gggtggcccg agacggcgcg cgccgcgacg acgcgcccct cctcgtccac
      481 agccacctgc accttgacga cgccttgcgc gcgcgcggcc ctcgcgatgg gcgggtattt
      541 cggcgggggg actgagacgg cgttgtccct gagcgggcgg cccccaccgt cgccgccggc
      601 cgctaccgcg gcgccggagc cttcgttcgt accggcgccc ccacctctcg ctacggccgc
      661 tgacggctcg ccccgccctt cccccgccac gacggcgcgg gcgtcatgcg tcacgtcaac
      721 gcgcgcggaa gcgcccgagg gctgcggcgg ctcggacggg cgcgcggggc ggggcgggcg
      781 cgggacgccg ccccactgag tgccgtccgt gaactcgacc cacccgagtt tcacgttcgc
      841 cgagttgccc ggcattatca cgttgagcct gccccactcg gagcgtatcg tcacggtctc
      901 gcccggcccg accctgacgg ggtggccgag catcaccatc tcctcctcgc cgcccgacgc
      961 gaagcttatc ccgacctcct tgacggcgcg cgacgagacg ttcgtgatag tgacggaagg
     1021 cagcgtgacg aagtagtcgg agtcgtcaac gccctcgtcg tggaagctgt cggcgccctc
     1081 ctcgtcggcg cgcttgagct gctcgcgcgt gatgagcttc atcctcgcct cgctgatgac
     1141 gacgggcgcg cccgccgcgt tctccgtcgt gacggcggcg tccggcgcct gcgcgagctc
     1201 tttgacggcc gggccttcct cgccgcgagg cggcagcgca cgcgcccgca cgcgcggcgc
     1261 cctcccgccc tgcccttcgg ccccgtcagc cccctcgccc ggcatgagcg ccgcgcgcgc
     1321 gccgggcgcc gcagccatca ggcccgccgc cgctgtaagc gccagcgccg cgaacgcagc
     1381 cgcccccggc agcagccgct gccagcggcg cgcgcccgcc tcctcactct ctcgcatgat
     1441 catctcaatc ctccttcgca ggttggggcc ggccgcggcc cccgaaacgc cggccaccct
     1501 ccagccggaa cagaagcgga cgaccttcag gatgctcgaa gcgtaagcgc cggggcgccc
     1561 gccgacttcg agcacgcgct cgtcgcaggc gtgctcgcgc tccgcgagca ggcgcgcctg
     1621 tatgagccag acgagtggat ggaaccacag cacacagttg agggcggtct gcagtttgcc
     1681 gaagaggttg tcgcgccgct cgacgtgcgc cagctcgtgc agcatcaccg actccaactc
     1741 ttcgtcgtcg agctgctcgg caatcagctc cggcactatg acgacaggcc ggcgcgtgcg
     1801 ccacacgccc ggctcggttc tgagcggcga gagcacgagc agcacttctt tcttcaaccc
     1861 catgcgcgcc cgcgccctct ccatcgcctc gaactcttgg cccgagtacg actcgcggcc
     1921 cgcgcggagc gcgcgcagaa actcgcggcg cctcgctagc ccgacggctc ccaggcccgc
     1981 gagccccagc ccccacgcga gcgtgagcgc gcagtaaagc tccgagccgt gcggcgccgc
     2041 cgccgacacc gtgacctcga gcgtgtcgga gaagggcgct agcggcgccg cgagctgccg
     2101 cacgacggtc acccctcccg gccccctcgc cgcgccgaag aggcgcgaag cgtccatgcc
     2161 ggccgccgag acgagcgcgg cgaagagcgc cgaaggcagc gcgaacttcg ccgccgccac
     2221 gagccacagc gagtggcgca ggcgcgcccg cccgcgcccc cgcaggcaga gcgtgacggc
     2281 gaaaacgagc gccgcgaaca ggctcgcctg ccacaggtgg tcggccgccg cgggccagag
     2341 ccagcgcgag gcgcccgcca gaagttcgtg aagccccgcc gccgtcatcg ccgccccctc
     2401 tcccggccct tgccgcgcac gacctcgccg cccgcctcgc cctctccgcc tcccgccgcg
     2461 cgccgctcgg cttcgagcct ctccaaagtc agctcggcct cgcgcaggtc gtccagcgtt
     2521 agccggcccg cctcaacgag ctgcgccatg agcgtgcgcg ggctcccgcc gaagaaggcc
     2581 aggaggtcgt caactatccg cctcgccgcg gccttgcgcg tcacgaccgg ctcgaatatg
     2641 tgcgcgttcc caatcttctt cacgcgcctg accgcg
//
LOCUS       DASPKR010000616        12497 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_876536, whole genome shotgun sequence.
ACCESSION   DASPKR010000616 DASPKR010000000
VERSION     DASPKR010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12497)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12497
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_876536"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1426
                     /locus_tag="VD968_16430"
     CDS             <1..1426
                     /locus_tag="VD968_16430"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HYE16030.1"
                     /translation="ESLRRAILAGQLKPGARLPSTRDMAAELKVSRNTVLNAFEQLLA
                     EGYVEGQTGSGTYVSRRLPEELLNARGSERRVAKRPRHGGRLSRRGEALAATSSSVSR
                     TAAGARAFRPGSPAIDAFPFEIWSRLTARHWRRPRRDLLNYGDPAGHWPLREAIAAYL
                     GTARAVTCEPEQVIVVAGAQQGLDLTARLLLDEGDAAWVEEPGYLGAKGALAAAGARL
                     VPVPLDSEGLDVDAGARLAPSARVIYASPSHQYPTGVTMSLARRLKLLEWAGRAGAWV
                     IEDDYDSEYRYAGRPLGALQGLAADGRVIYVGTFSKVLFPALRIGYVVVPVELVEAFR
                     SARALVDRHSPTVEQAVLADFLAEGHFARHVRRMRALYAARQEVLLAAAAEELGGLLE
                     VRPSDAGLHVLGLLPPGVCDREASLAAEARGVEAQPLSAFHLKPPARGGLVLGYAAYD
                     ERELRGAVLKLADALREVTRAAKR"
     gene            complement(1483..3828)
                     /locus_tag="VD968_16435"
     CDS             complement(1483..3828)
                     /locus_tag="VD968_16435"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choice-of-anchor Q domain-containing protein"
                     /protein_id="HYE16031.1"
                     /translation="MSFPLRACRALAAACLLTLVLSASHSASAATFAVNHLGDTNDSA
                     AGNGTCADSAGKCTLRAAITEANALAGDDTLNFSVAGTINLTGGSTPDLESALYINSN
                     ITINGPGASLLTVRRDTGGDYRIFRIAAGATVHISGLTVSNGRVVYIGDAQAGSCGGI
                     NSQGTLTLTGVTVSGNVVDGGGGGICNDDGELTIKNSTVSGNTAGGGGGIVSYGTIEI
                     ENSTVSGNTALGEFGGILSDYGLVTIKNSTISGNTAGFYCGGIYIGLYGSENATLTSV
                     TVTANRADPNGSEGGMGGGIVLRAENDTVFTLRNSIVWGNYKGADTPDDFLVIFAPYP
                     NAEYNLIGASDPADAFFPAYPFFEERFNQVGVEDAMLGPLADNGGPTKTHKLLPGSPA
                     IDQGNSFGLTTDQRFYSPRISDNPDSPDGSGDLADIGAYDTGGLPPADMEITKRDSVD
                     PAPVGSSFDYELRVYNRGPGPAPNVVVTDTVPAGLTVTGVSMHASTDYTGSGCSFTGN
                     AVNCQLGTMRVFDNTFDGTVKKGKALIYVTVTASQVGQYANEATVSGGVADLSPSNNT
                     GRQTTTVLGVSSVTVTPNTVPGGSNCQKPVVQVTLSGVAPYDTFVEVSDDIHGGTDIP
                     PDTAPLLLRIPQGQSSATLLVTTAQVGDSLTGQVTARYGSSSVFAPLTLRPIGVKSLT
                     VSPTGVEGGTSATATVNLECIPSQPLSVILKSSKPSAAKFINPPFGVAANPVTVQMGA
                     KQAAFSVETYAVAANAGVNISAEGADGVQRNDRLDVLAPSP"
     gene            complement(4032..4178)
                     /locus_tag="VD968_16440"
     CDS             complement(4032..4178)
                     /locus_tag="VD968_16440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16032.1"
                     /translation="MSDELFARLRRLYTDDAIVELTEVIAWENASSKFNRTLRIPSQK
                     LWKR"
     gene            complement(4542..7508)
                     /locus_tag="VD968_16445"
     CDS             complement(4542..7508)
                     /locus_tag="VD968_16445"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16033.1"
                     /translation="MACLAAAALLGAVGLPLSRVGPPARAGAGEAGRAEREWPEAPAG
                     LREAFERARYGVEVEGGGEAGGPVAVLARNPAQQFLARFEAGGLSIEPSGKAGAWRFG
                     MSLEAYGYGGRARPVEEAVPSGEGERVEYRRGPLVEWYINERRGVEQGFTLSERPEVE
                     GGGAAAGERLVLRLRVGGGLRAEAGADGRQISFADGSGAEVLLYDHLAAYDAGGRELA
                     SRMSVDGGAVLLEVDDAGAQYPLTVDPLIQQARLQASDAAANDFFGESVAFDGNTAVV
                     GSWLDDHSGMADNGSAYVFVKSGATWALQRKLTVVGANFDLFGYSVAIEGDTVVVGAP
                     GDDTGVGPDAGSAFVFTRSGTTWTPRTFLLASDDAAFDNFGYSVAIEGGTVVIGAPRD
                     DIFGLPSVGSAYVFTGSGATWTEQQKLEPSDFNEAGAFGYSVAVDGDTAVVGAPSDDV
                     NDGGSAGFAYVFVRSEDGWFEQQKLEASDAAADDRFGFSVAVDGDTAVIGAPGDDFAG
                     GPDAGSAYVFVRSEDVWSEQQKLEASGNRSGDIFGYSVAIEGDMVVVGAPRDEVESWI
                     DAGAAYVFNRSDTTWAQQLRLQASDAANGDNFGDSVAIDNYRVVVGAPADDHPGKTNA
                     GSAYAFDAGMEITKKDSTDPVPVGTSFNYELRVYNRGPLITNNVTVTDPVPAGLTVTG
                     VSMHPSSDFTGTGCSIDSGTNTVNCDLGTMRVFDDTSDGAVKKGKAVIIVNVTATQAG
                     QYTNEATVSADEPDPDMTDNTGRQKTTVLGVSSVAITVNNTAGGSVAGGAGCGNDEKA
                     LVRVTLTGVAPFDTFVSLSDDLAATTNIPASTSPLLLRVPQGQSSATLLVGTVQVSTK
                     QEGEVTASYGTSSASAPLAVNPVGVKRALVSPASPGGVVGGAGNATATVNLRCTPSSP
                     VSVTLSTDKPSMARFIDPATNMAANSVTVQVSTKQPTFTIETYAVSNSEGVTVTARGG
                     DGVAENTRLNVLAPSP"
     gene            complement(7816..7962)
                     /locus_tag="VD968_16450"
     CDS             complement(7816..7962)
                     /locus_tag="VD968_16450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16034.1"
                     /translation="MSDELFARLRQFYTDDAIVELTEVIAWENASSKFNRALRIPSQK
                     LWKR"
     gene            complement(8113..8352)
                     /locus_tag="VD968_16455"
     CDS             complement(8113..8352)
                     /locus_tag="VD968_16455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16035.1"
                     /translation="MRIEGIGPEEADDYARRVMEAQAGKWGAPLINHTVYARRPTIFR
                     AVRGMWQGIEASGLIDARLQALVNRRVAALNGCEF"
     gene            8544..8807
                     /locus_tag="VD968_16460"
     CDS             8544..8807
                     /locus_tag="VD968_16460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16036.1"
                     /translation="MSAQRSDNSQGDTGTRDITYDLISTCYHQLQGAETVAMYIADAE
                     QEGNQEIIQFFRETKDEYERRADRAKQLLATHLSTQSRGASGG"
     gene            complement(8907..10055)
                     /gene="moeB"
                     /locus_tag="VD968_16465"
                     /pseudo
     CDS             complement(8907..10055)
                     /gene="moeB"
                     /locus_tag="VD968_16465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_257790190.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
     gene            complement(10134..10394)
                     /locus_tag="VD968_16470"
                     /pseudo
     CDS             complement(10134..10394)
                     /locus_tag="VD968_16470"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
     gene            complement(10385..11710)
                     /locus_tag="VD968_16475"
     CDS             complement(10385..11710)
                     /locus_tag="VD968_16475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16037.1"
                     /translation="MTFRRFLGGLLLLSAASLACAGVARAQEGAGPKEGSAPPAARKI
                     DEYGRLGGCDHSARLDNFAIELQSDSSARGVVIAYGPAGERSGTADFRLRVTWNYLVN
                     QRGITPERVKVINGGRLPAPGEASTQLWVVPPGAEDPEPVTHESAAESFRGMFAEAER
                     WDGRFMGDGMTGPPVGDAEMAGFADSLRLQPEAVAYLVAFNGEESAPGAWRRVAEEDV
                     EEIKRAGVEADRIKIIFGGYSERPKAQLWILPKDAPPPAAHEGPERTPKGAVQLGTYP
                     QYQLKYEDEARWVFKSVADVLKADEKINAVFVVRLPPVQSGAEEEQEGEYPAQVKGHG
                     DDEAAEPAEPAAPEEAEEEEPPDVDIARLVEDWKAAFRKEHGIGPERLTIILVPARGE
                     WDGDELDAWLVPQGATIPDPFAVEGEAEAEEPAEGTEQEEPKGVSFLWR"
     gene            complement(11707..12153)
                     /locus_tag="VD968_16480"
     CDS             complement(11707..12153)
                     /locus_tag="VD968_16480"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HYE16038.1"
                     /translation="MIRLPRRVEGEIMRHAEREYPHECCGLLVGRIEDDGRARTVFAA
                     VPVENAFEDAGERHRRMLIRPLEYARAERLYASRGMGVVGNYHSHPDHPAVPSQFDLE
                     NLAPWPTMSYVVVSVSAGAARELRSWELEEDRSRFREEEVVWEEEP"
     gene            complement(12150..>12497)
                     /locus_tag="VD968_16485"
     CDS             complement(12150..>12497)
                     /locus_tag="VD968_16485"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HYE16039.1"
                     /translation="LLRELKPGVRAVLVQPDSPLHGLEGMRDLATSIVPGIYDPTIED
                     ERVAVSTEDAQGMARRLAREEGLFVGVSSGANVLAALRCAESLAAGSVVVTVLCDGGG
                     RYLSDEFWEEGRE"
BASE COUNT         1904 a         4250 c         4217 g         2126 t
ORIGIN      
        1 cgagagcctg cggcgcgcta tcctggccgg ccaacttaag ccgggcgcac gcctgccctc
       61 gacgcgcgat atggccgcgg agctgaaggt ctcgcgaaac actgtgctga acgccttcga
      121 gcaactgctg gccgaaggct acgtcgaggg gcagacgggc tccggcacgt acgtctcgcg
      181 caggctcccc gaggagctgc tcaacgcccg cggctcggag cgtcgggtgg cgaagaggcc
      241 gcgccatggc ggcaggctct cgcgccgcgg cgaggcgtta gcggcgacga gctcgagcgt
      301 ctcgcgcacg gcggccggcg cgcgcgcctt ccgccccggc tcgcccgcga ttgacgcgtt
      361 ccccttcgag atttggtcgc ggctgaccgc gcgccactgg cggcggcctc gccgcgacct
      421 gctcaactac ggcgaccccg ccggccactg gcctctgcgc gaagcgatag ccgcgtacct
      481 cggaacggcg cgcgcggtaa cttgcgagcc ggagcaggtc atagtcgtcg cgggcgcgca
      541 gcaggggctc gacctcacgg cgcggcttct gctagacgag ggcgacgccg cgtgggtcga
      601 agagccggga tacctcggcg cgaagggcgc gcttgcggcc gctggcgcga ggctcgtccc
      661 cgtgccgctc gactcggaag gcctggacgt ggacgcgggc gcgcggctcg ccccctcggc
      721 gcgggtcatc tacgcctctc cgtcgcacca gtacccgacg ggcgtgacga tgagtttggc
      781 gcggaggctc aagctcctcg aatgggcagg gcgcgcgggc gcgtgggtga ttgaagacga
      841 ctacgacagc gagtaccgct acgcgggccg tccgctcggc gcgttgcagg ggctcgcggc
      901 cgacggtcgg gtgatttacg tcggcacgtt cagcaaggtg ctcttccccg cccttcgcat
      961 cggctacgtg gtcgtgcctg tggagttggt cgaggcgttc aggtcggcgc gcgctctggt
     1021 tgaccgccac tcgcccacgg tcgagcaggc ggtgctcgcg gacttcctcg ctgaaggcca
     1081 cttcgcgcgc cacgtgcggc gcatgcgcgc tctctacgcg gcgcggcagg aggtgctgct
     1141 cgccgcggcc gccgaagagt tgggggggct tctggaagtc aggccgtctg acgcgggcct
     1201 gcacgtgctg ggcttgctgc cgccgggggt gtgcgaccgc gaggcgtcgc tcgccgccga
     1261 ggcgcgcggc gtcgaggcgc agccgctctc ggccttccac ctcaagccgc ccgcgcgggg
     1321 cggcctcgtg ctcggctacg cggcctacga cgagcgcgag ttacgcgggg ccgtgctgaa
     1381 gctggccgac gccctgcggg aggtgacgcg ggcggcgaag agataggcag acggcttcgc
     1441 ggcggccggg gcggtcgcgc ggagacacga cgcgcccgcg cgtcagggcg aaggcgcgag
     1501 cacgtcgagg cggtcattgc gctgcacgcc gtccgcgccc tctgcgctta tgttgacgcc
     1561 ggcgttggcc gccaccgcgt aggtctctac cgagaaggcg gcctgcttcg cccccatctg
     1621 caccgtcacg gggtttgcgg cgacgccgaa cggcgggttg atgaacttcg cggccgacgg
     1681 cttgctcgac ttcaggatta ccgaaagggg ttgcgacggg atgcactcga ggttgacggt
     1741 cgccgtcgcc gacgtccctc cctcgacccc agtgggcgac accgtcagac tcttgacgcc
     1801 tatcggcctg agtgtaaggg gggcgaagac cgaggacgaa ccgtagcgcg ccgtcacctg
     1861 ccccgtcagg ctgtcgccga cctgcgcggt cgtcacgagt agcgtggccg aggactggcc
     1921 ctgcggtatg cgcagcagta gcggggccgt gtcgggaggg atgtcggtgc cgccgtggat
     1981 gtcgtccgag acctcgacga aggtgtcgta gggggcgacg cccgaaagcg tcacctggac
     2041 gacgggcttc tggcagttcg agccgccggg gacggtgtta ggggtcaccg tgacggagga
     2101 tacgcccagc acggtcgtcg tctgccttcc ggtgttgttc gagggcgaga ggtctgccac
     2161 gcctcccgag acagtagcct cgttcgcgta ctggccgacc tgcgacgccg tgaccgtgac
     2221 gtagatgagc gccttgccct tcttgactgt cccgtcgaag gtgttgtcga agacgcgcat
     2281 cgtgcctagc tggcagttga cggcgttgcc cgtgaacgag cagcccgagc cagtgtagtc
     2341 cgtggaggca tgcatcgaga ctccggtcac cgtcaggccc gccgggactg tgtcggtcac
     2401 cacgacgttg ggcgccgggc cggggccgcg gttatacact cggagctcgt agtcgaagga
     2461 ggagccgacg ggcgcggggt caacagagtc gcgcttcgtt atctccatgt cggcgggcgg
     2521 gaggcccccc gtgtcgtagg cgccgatgtc ggcgaggtcg cccgagccgt ccgggctgtc
     2581 cgggttgtcg gagatgcgcg gcgagtagaa gcgctggtct gtcgtcaagc cgaagctgtt
     2641 gccctggtca atggcggggc tgcccggaag gagcttgtgc gtcttggtcg ggccgccgtt
     2701 atccgcgagc gggccgagca tcgcgtcctc gaccccgacc tggttgaacc gttcctcaaa
     2761 gaaggggtag gcgggaaaga aggcgtcggc ggggtcactc gcgccgatga ggttgtattc
     2821 ggcgttcggg tagggggcaa agatgacgag gaaatcatcc ggggtgtcgg cgcctttgta
     2881 gttgccccac acgatcgagt tgcgcagggt gaagacggtg tcgttctcag ctcgcaagac
     2941 gatgccgccc cccatgccac cctcacttcc gttcgggtca gcgcggttag ccgtgactgt
     3001 gacggaggtc agggtggcat tttccgaccc gtacaatccg atatagatgc cgccgcaata
     3061 aaaccctgcg gtgttgccgc tgatggtgct gttcttaatc gtcaccaggc cataatcgga
     3121 aaggatgccg ccgaactccc caagcgcggt gttgccactg acggtgctgt tctctatctc
     3181 gatagtgccg taggagacga tgccgccgcc gccgcctgcg gtgttgccgc tgacggtgct
     3241 gttcttgatc gtcaactcgc cgtcgtcgtt gcatatgccg ccgccgccgc catctacgac
     3301 gttgccgcta accgtgacgc cagtcagcgt cagcgtcccc tgggagttga tgccgccgca
     3361 actgccggcc tgcgcgtccc cgatatacac cacacggccg ttgctgacgg tgaggccgga
     3421 gatgtgaacg gtcgcgccgg cggcgatgcg gaagatgcgg tagtcccctc cggtgtccct
     3481 ccgcaccgtc aagaggctcg cgccggggcc gttgatggtg atgttgctgt tgatgtagag
     3541 cgccgactcc aagtcgggcg tggagccgcc cgtcaggttg atcgtgccgg cgacggagaa
     3601 gttgagggtg tcgtccccgg cgagggcgtt cgcctccgtg atggccgcgc gcagcgtgca
     3661 cttgcccgcc gagtcggcgc acgtgccgtt accggccgcc gagtcgttag tgtcgccgag
     3721 gtggttgacc gcgaaggtgg ccgccgaagc gctgtgcgac gcggaaagca cgagcgtcag
     3781 caggcaggcc gctgccagtg cgcggcaggc gcggaggggg aaactcatgg ggcagactcc
     3841 ttaaaatccg ttgggcgtgt gtagaacgag accgtgaggc acggcgaaga gtggttgcgt
     3901 tgactttcct agagccggaa aggatttggc tgcccctgtg tgtcggggtc gcaacttata
     3961 ccacggcggg gcgggcaaca caaaggcatt ctcgcccgcg ccgccatcgg gagggagaac
     4021 tggcgcgggc ttcaacgctt ccagagcttc tgcgagggga tgcgaagcgt gcggttgaac
     4081 ttgctagagg cgttctccca ggcgatgact tccgtcagct ccacgatggc gtcgtcggtg
     4141 tagagccggc gcaggcgcgc gaagagttcg tcgctcacgt ccatgtcgga gagggtgatg
     4201 gcgtcggcgt actctagcgc ggcgcgctcg gcctcgtcgt agagggggct cgtggcgtag
     4261 tcgcccagcg cctctatctt cccgtccgtg acccccagct cgctgccgac cgcagcgttt
     4321 atgtcctgtc aaaactcgca gccgttgagc gcggccacgc ggcggttcac gagcgcctga
     4381 aggcgcgggt caatcagccc ggaagcctca atcccctgcc acatcccgcg cgcggcggcc
     4441 tcgtgctcgg ctacgcggcc tacgacgagc gcgagatacg cgaaggcgtg cgccggctcg
     4501 ccgaagccct ccgagaggtc gcgcgttcgg cgggcaggtg attacggcga gggcgcgagc
     4561 acgttgagcc ttgtgttctc tgccacgccg tcgccgcccc tggcggtgac ggtcacgcct
     4621 tcggagttgc tgaccgcgta ggtctcaatc gtgaacgtgg gctgcttcgt acttacctga
     4681 acggtcacgg agttggcagc catgttcgtc gccgggtcta tgaaccttgc catggacggc
     4741 ttgtcagtgc tcaaggtcac gctcacgggg ctcgacggcg tgcacctcag gttgacggtg
     4801 gcggtcgcgt tccccgcccc gcccacgaca ccacctggcg acgcaggcga gaccagtgcc
     4861 cgcttcacgc cgacggggtt gaccgcgaga ggggccgatg cgctcgacgt gccgtagctg
     4921 gccgtcacct ccccttcctg cttcgtgctc acctggacgg tgcccacgag cagagtcgcg
     4981 gaggactggc cctgaggtac gcgcagcagc agcggcgagg tggaggcggg tatgttcgtc
     5041 gtcgcggcga ggtcgtccga gagcgagacg aacgtgtcga agggggcgac gcccgtcaga
     5101 gtcaccctga cgagcgcctt ctcgtcgttg ccgcaaccgg cgcccccggc cacgctgccc
     5161 ccggccgtgt tgttcaccgt gatcgcgacg gacgagacgc cgaggacggt ggtcttctgt
     5221 cggccggtgt tgtccgtcat gtccgggtct ggctcgtcgg ccgagacggt cgcctcgttc
     5281 gtgtactgcc ccgcctgcgt ggccgtgaca ttcactatga tgacggcctt gcccttcttc
     5341 acagcgccgt cggatgtgtc gtcgaagacg cgcatagtgc ccaggtcgca gttgaccgtg
     5401 tttgtgccgg agtcaataga gcagcccgtg cctgtgaagt cgctcgacgg gtgcatgcta
     5461 acgcccgtca cggtcagtcc ggcgggaacc gggtctgtga ccgtgacgtt gttcgtgatg
     5521 agcgggcctc ggttatagac gcgcagctcg tagttgaagg aggtgccgac gggcacgggg
     5581 tctgtggagt ctttcttcgt tatctccatg ccggcgtcga aggcgtaggc agagccggcg
     5641 ttcgtcttgc cggggtggtc gtccgcggga gcgccgacta ctaccctgta gttgtcaatc
     5701 gcgaccgagt cgccgaagtt gtcaccgttg gcagcgtccg aagcctgcaa cctcaactgc
     5761 tgcgcccacg tcgtgtcgct tctgttgaag acgtaggcgg cgccggcatc aatccagctt
     5821 tctacttcat cgcggggagc gccgactacc accatgtcgc cttcaatcgc gaccgagtag
     5881 ccgaagatgt caccggagcg gttaccggaa gcctccagct tctgctgctc agaccataca
     5941 tcctcgctcc tgacgaagac ataggcggaa ccggcgtccg gcccgccggc gaagtcgtcg
     6001 ccgggagcgc cgattaccgc cgtgtcgccg tcaaccgcga ccgagaagcc gaagcggtca
     6061 tcggcagcgg cgtccgaagc ctccagcttc tgttgctcaa accacccatc ctcgctccta
     6121 acgaagacgt aagcaaagcc ggcgctccct ccgtcgttga cgtcgtccga gggagcgccg
     6181 actaccgccg tgtcgccgtc aaccgcgacc gagtagccga aggcgccagc ttcgttgaaa
     6241 tccgaaggct ccagcttctg ctgctctgtc cacgtcgcgc cgcttccggt gaagacgtag
     6301 gcggagccga cactcggtaa gccgaagatg tcgtcgcggg gagcgccgat taccaccgtg
     6361 ccgccttcaa tcgcgaccga gtagccgaag ttgtcaaagg cggcgtcgtc cgaagccagt
     6421 agaaacgtcc gcggagtcca agtagtgccg cttctggtga agacgaaggc cgagccggcg
     6481 tccggcccga cgccggtgtc gtcgccggga gcgccgacta ccaccgtgtc gccttcaatc
     6541 gcgaccgagt agccgaagag gtcaaagttg gcgccgacaa ccgtcaactt ccgctgcaac
     6601 gcccacgtcg cgccgctttt gacgaagacg taggccgagc cgttgtccgc catgccggag
     6661 tggtcgtcca gccacgagcc gactacagcc gtgttgccgt caaacgcgac cgactcgccg
     6721 aagaagtcat ttgcggcggc gtcactagct tgcagcctcg cctgctgtat gagtgggtca
     6781 accgtcaaag ggtactgcgc ccccgcgtcg tccacctcca gcagcacggc cccgccatcc
     6841 acgctcatgc gcgacgccaa ctcccggcct ccggcgtcgt aggccgccag atggtcgtac
     6901 aaaagcacct cggcgcccga cccgtccgcg aagctgattt gcctgccgtc ggccccggcc
     6961 tcggcgcgca agcccccccc gaccctcagc ctcagcacga gccgctcgcc ggccgcggcc
     7021 ccgccgcctt ccacctccgg cctctccgac agcgtgaagc cctgctcgac gccccgcctc
     7081 tcgtttatgt accactcgac gagcgggccg cgacggtact cgactcgctc gccctcgccc
     7141 gaaggcacgg cctcctccac gggccgcgcg cgcccgccgt agccgtaagc ctcaaggctc
     7201 atcccgaatc gccacgcccc ggccttgccg ctcggctcga tgctcagccc gcccgcctcg
     7261 aagcgagcga gaaactgctg cgccgggttg cgtgcgagca cggccacggg gccgcccgcc
     7321 tcgccgccgc cctcgacctc cacgccgtag cgcgcccgct cgaaggcttc gcgcaggccc
     7381 gcgggggctt cgggccactc cctctcggcc cggcccgcct cgcccgcgcc ggcgcgcgcg
     7441 ggcggcccga cgcgcgaaag gggcaggccc actgcgccga gcagcgccgc ggcggcgagg
     7501 caggccaaag cgaaaagaga aaaagatggt gcttcggggc gaacgatgag gcgcattggg
     7561 ggcattctcc ttctagcggg gtgcttctcg ccggttacta agggctcgcc ggcggggaag
     7621 gtaaagcgga attgagcgcg caggcgtcag gcgtgggcgc gttagcggat actagctcct
     7681 catgtcatgt gtagtcggga aagctcgtga gtcgggagcg ggatttatag atccgcgtgt
     7741 cggggacacg atttatagca caggtgggag aacgcaacaa atggaattcc cgccgggccg
     7801 ggaggggcgg gggcctcagc gcttccagag cttctgcgag gggattcgga gtgcgcggtt
     7861 gaacttgcta gaggcgttct cccaggcgat gacttccgtc agctccacga tggcgtcgtc
     7921 ggtgtagaac tggcgcaggc gcgcgaagag ttcgtcgctc acgtccatgt cggagagggt
     7981 gatggcgtcg gcgtactcta gcgcggcgcg ctcggcctcg tcgtagagtg ggctcgtggc
     8041 gtagtcgccc agcgcctcta tcttcccgtc cgtaatccct agctcgctgc cgaccgcagc
     8101 gtttatgtcc tgtcaaaact cgcagccgtt gagcgcggcc actcggcggt tcacgagcgc
     8161 ctgcaagcgc gcgtcaatca gccccgaagc ctcaatcccc tgccacatcc cgcgcacggc
     8221 gcggaaaatt gtagggcggc gcgcatagac cgtgtggttg atgagaggcg cgccccactt
     8281 cccggcctgc gcctccatca cacgccgcgc gtagtcgtcg gcctcctccg gcccaatccc
     8341 ttcgattcgc atccagtcag acctcctaaa cgcccgaata ctaaccgccg tccggcgcgc
     8401 gcggaagtgc cattttgtga aagacggcgg gccgcggccg tcttgacctc gccgggcgcg
     8461 cgtgcctaca atcggccccg agttcccccg ccgaagcccc cgccgaaaga cgtgagccaa
     8521 acttttcatc gaaggggtga attatgtccg cacagaggag cgataacagt cagggcgata
     8581 cgggaacccg cgacatcact tacgacctga tcagcacctg ctaccaccag ctacagggcg
     8641 cagagaccgt cgcgatgtac atcgccgacg ccgagcagga aggcaatcag gagatcatcc
     8701 agttcttccg cgagacgaag gacgagtacg agcgccgcgc cgaccgcgcc aagcaactgc
     8761 tcgccacgca cctcagcacg cagtcgaggg gcgcctccgg cggctaaacc ggcccgggcg
     8821 gcgtcagtca cggaaagcgg gagtggccgc gtgagcgaaa acaggctcac gcggccactc
     8881 ccgctttccg tgactgacgg ctgcccctaa tacttcggca cgctcgggtc aacgtcgttc
     8941 gaccaggcgg tgatgccgcc cttgaggttc acgagcttgc cgcggaagcc ggcgcgggtg
     9001 agcgcctcta tggccttcgc gctgcggacg ccgcccttgc agtggacgac ggtctcgcga
     9061 gcctcgtcta tctcgccgcg gcggttcacg acctcgccga gcgggatggg cttggcgccg
     9121 ggtatggtgg cgatgtcgcg ctcgtagggc tcgcgcacgt ctatgagttg gatgtcgtcg
     9181 cccctgtcca tgcgggcctt gagctcggtc gcggtcatct cttccatctc tctcgtctcc
     9241 tcggttttgg tttcgggcgc cggccgaagg ccgcagaact cctcgtagtc aatcaactct
     9301 cgcacagtgg gctgcgggcc gcagacgggg cagccggggt ctttgcgaag cttcagctcg
     9361 cggaagcgca tcttgagtgc atcgaacagg agcaggcggt tgatgagggg ctcgccgcgg
     9421 ccgatgagca gcttgatggc ctcgttggcc tgtatggcgc cgacgatgcc gggcaggacg
     9481 ccgagcaccc cgccctccgc gcaggagggg acgagccccg gaggcggggg ctcggggtag
     9541 aggcagcggt agcacgcgcc gcgctcggcc cagaagacgg aagcctgccc ctcgaagcgg
     9601 aagattgagc cgtaaacgtt gggcttgccc gtgagcacgc aggcgtcgtt gacgaggtag
     9661 cgcgtgggga agttgtctgt gccgtcaaca acgaggtcgt attcgcggaa cagttcgagc
     9721 gcgttctcgc tcgaaagcct cgtctcgtaa gcctcaattt tgacgtgcgg gttgatgtcc
     9781 gtgaggcggt cgcgcgccga ctctatcttc gggcggccca cgtccttcgt gccgtggact
     9841 atctgccgct gcaagttcga ctcgtccacc acgtcgaagt caacgatacc cagcgtgcct
     9901 acgcccgccg cggcgaggta catccccgtc ggcgcgccca gcccgcccgt gcctatcatg
     9961 agcacgcgcg acgccttcag cctccgctga ccctcgacgc cgacttcggg catgatgagg
    10021 tgacggctgt accgggcgac ctcatcgtga gtgagcgcgg gaagctccgc ggccctgacg
    10081 gccgaagcgc cgggcgattg cttctcctcc gccgccgtcg agccgccggc aatcgccggg
    10141 actatcgtca ccgtgtcgcc gtccttcagg ggcgtttcga gacgctgcgc cgagcgaatg
    10201 tcctcgtcgt tgacatagac gttaacgaag ttgcgcaagg cgttctgctc gccgtagagg
    10261 tggcgtcgaa gctccgcgtg ctcggccgtc atgcgatcca gggcctcgcc gacggtagcg
    10321 gcctcgacct ctacctccgc ctccccgccc gcgaactgcc tgagcgcggt cggtatgaaa
    10381 attgttaccg ccataaaaag ctaactccct tcggttcttc ctgctccgtc ccttcggccg
    10441 gctcttccgc ctccgcctca ccctcgaccg cgaacgggtc ggggatggtc gccccctgcg
    10501 gcacgagcca ggcatccagc tcgtcgccgt cccactcgcc gcgggccggc actaatatga
    10561 tcgtcagacg ctccgggccg atgccgtgct ctttcctgaa cgccgccttc cagtcctcga
    10621 cgagccgcgc gatgtccacg tcgggcggct cttcctcctc ggcctcctct ggcgcggccg
    10681 gctcggccgg ctcggccgcc tcatcgtcgc cgtgaccttt cacctgcgcc gggtactccc
    10741 cttcctgctc ctcttccgcc ccggactgga cgggcgggag cctgacgacg aagacggcgt
    10801 ttatcttctc gtcggccttc agaacgtccg cgaccgactt gaagacccag cgggcctcgt
    10861 cctcgtactt gagctggtac tgcgggtagg tgccgagctg cacggccccc ttcggcgtgc
    10921 gctccggccc ctcgtgggcc gcgggcggcg gcgcgtcttt cggtagaatc cagagctgcg
    10981 ccttcggccg ctccgagtag ccgccgaaga tgatctttat gcggtcggcc tcgacgcccg
    11041 cgcgctttat ctcttccacg tcctcctcgg ccacgcgccg ccaagcgccg ggcgcgctct
    11101 cctcgccgtt gaaggcgacg aggtacgcga ccgcttcggg ttgcagccgt agcgagtcgg
    11161 cgaagccggc catctcggcg tcgcccacgg gcggccctgt catgccatcg cccatgaagc
    11221 ggccgtccca gcgctcggcc tccgcgaaca tgccgcggaa gctctccgcg gccgactcgt
    11281 gcgtgacggg ctcggggtct tcggcgcccg gcgggactac ccacaactgc gtggaggctt
    11341 cgcccggcgc ggggagtcgg ccgccattta tgaccttgac ccgctcaggc gtgatcccgc
    11401 gctggttcac gaggtagttc caggtgacgc gcaggcggaa gtccgccgtc cccgagcgct
    11461 cgcccgcggg gccgtaggcg attacgacgc cgcgcgccga cgagtcgctt tgaagctcta
    11521 tggcgaagtt gtcgagacgc gcgctgtggt cgcagccgcc gagccgcccg tactcgtcaa
    11581 tcttgcgcgc ggcgggaggc gccgatccct ccttaggccc tgccccttct tgcgcgcgcg
    11641 cgactcccgc gcacgcgagc gacgcggccg agagcagaag caggccgccc agaaagcgtc
    11701 tgaacgtcac ggctcttcct cccacacgac ctcctcctcg cggaaccgcg agcggtcttc
    11761 ctcaagctcc caggagcgca gctcacgggc ggcgcccgcg ctgactgaga cgaccacgta
    11821 agacatcgta ggccacggcg cgaggttctc aagatcgaat tgcgacggca cggccgggtg
    11881 gtcggggtgc gagtggtagt tgcccacgac gcccatgccg cgcgacgcgt agagcctctc
    11941 ggcccgcgcg tactccaaag gccgaatcaa catgcgcctg tgccgctcgc ccgcatcctc
    12001 gaacgcgttc tcgacgggga cggcggcaaa gactgtgcgc gcgcgcccgt cgtcctctat
    12061 ccggccgacg agcaggccgc agcactcgtg cgggtactcg cgctcggcgt gccgcattat
    12121 ctcaccctcg accctccgcg ggagccttat cactcgcgcc cctcttccca gaactcgtcg
    12181 ctcaggtagc gcccgccgcc gtcgcacagg acggtgacga cgaccgaacc cgccgccaag
    12241 ctctccgcgc agcgcaacgc ggccaggacg ttcgcgcccg agctgacgcc gacgaagaga
    12301 ccctcctcgc gcgcgagcct ccgcgccatg ccttgggcgt cttcggtcga gacggcgacc
    12361 ctctcgtcct caatcgtcgg gtcgtatatg cccggcacga ttgaagtggc gaggtcgcgc
    12421 atcccttcga gcccgtgcag cggcgagtcg ggctgaacga gcacggcgcg cacgcccggc
    12481 ttcaactccc tcagaag
//
LOCUS       DASPKR010000617        14192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1130029, whole genome shotgun sequence.
ACCESSION   DASPKR010000617 DASPKR010000000
VERSION     DASPKR010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 14192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14192)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14192
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1130029"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..648
                     /locus_tag="VD968_16490"
     CDS             <1..648
                     /locus_tag="VD968_16490"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HYE16040.1"
                     /translation="ELRTPLTSILGFAEILLDQEDLDGAQRRFCEKIQSSGFQLQASL
                     NQLVDLSRLEAGQTELFLHEFSLRETLRESCAAVARLAKKQGVALDCATSPEVSALVS
                     DEGKLRQVLYNFLSFAIGRSPSGGTVRVFASPDEGERVRVEIADEGEPLNDPAHLFEP
                     VDVDAPNERGTNMNELGLVIAHRLLDVLGGSVRLEGRGERGLSVHLTFPARPTEK"
     gene            727..1200
                     /locus_tag="VD968_16495"
     CDS             727..1200
                     /locus_tag="VD968_16495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16041.1"
                     /translation="MLFDFELAGRRVRLWQRPGESYNHVLMKALGYAMFVGEFPRLQI
                     EAGVGLRYKPDLVAERDGRRAAGVRFEFWGECGAVSMRKVAWLLKHGQLERLALFKID
                     CGVQPFVRELRESVGPRYREGGRLLLVNFAPDVAERAASRRVGRVPEGWYTKTFV"
     gene            1205..1963
                     /locus_tag="VD968_16500"
     CDS             1205..1963
                     /locus_tag="VD968_16500"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE16042.1"
                     /translation="MGEEAITIRECETVEEFDECVRLQREAFGLPDLELSPRRHLIVA
                     RSAGGWTLGAFDGPRMVGFVLTQVAARGPEVFGYSHMMAVAKGYQNRGIGARLKWAQR
                     RRALGEGRRLVKWTWDPMQSRNAHFNINRLGAVVRSYADNFYGTDYSTVTGKFGEASG
                     LPSDRLAAEWALDSPRVEALARGETPAPFGPAPRAAVEIPPDWGSLVREDAGAARGEL
                     LRVREEFRSAFASGLVCAGFERDGARPRYLFFSE"
     gene            1967..3379
                     /locus_tag="VD968_16505"
     CDS             1967..3379
                     /locus_tag="VD968_16505"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYE16043.1"
                     /translation="MPFTRFDRYVDRQARSFVERLRELCRMPSVAARGTGMRAVAEHV
                     EQMLQRVGAGTRSFKTGGGFPIIYGECGAGERCFLIYGHYDVQPVGQLTEWSSGPFAA
                     EARDGALYARGASNSKGDLVARVAAVEAYQKSFGKLPVCLRFIVEGEDGLGSPSLYRF
                     AAENQELLQADGCVWDDGYKDTNGRLVINLGFKGISFIELRAVGARTDLHSKWGGVVP
                     NPAWRLVQALATIVSPKGVITIDGFGSHVAPVSADDRAMLKTVELDEAGLRREFRIQQ
                     WVRGMTGRELTKELIFGPTCTICGMRTGHTEAGAKTVLPGAATARLDFRLVPDLTPEL
                     VVKLLRKHLDTRGFKDIEINELGSAPYAKSSPKSTVARAAIESAADVYGSQPVVYPLD
                     PASGPVGAVCGARQPPTPVVSFGVSYFGSNPHAPDENIRLDDFIQGVKYFGRVIHRLA
                     EIKEDEGAAGEREGFVQLSR"
     gene            3477..5477
                     /gene="ligA"
                     /locus_tag="VD968_16510"
     CDS             3477..5477
                     /gene="ligA"
                     /locus_tag="VD968_16510"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF005932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HYE16044.1"
                     /translation="MPTSAKSIGQEIQRLRAEILRHEELYYVHDRPEITDAEYDALLE
                     RLRALEEERPEFRTPDSPTLRVGGRPAEGFAEHVHRRQMLSLDNSYNIEDLRAFDERC
                     RKLADGRPFEYVAELKIDGLSLSLHYERGVLVRGVTRGDGRVGEDVTQNVRTIRSVPL
                     RLKGPAPAEVEVRGEAYLSRRAFERINAEREEADEPKFANPRNAAAGTIRQLDPKVVA
                     RRRLDFFAYDLLSGDRKAFDTHWQALEWLAGAGFAVNPHREKCADIERVIAFCERTEA
                     ERDRLDYEIDGVVVKVNSTALQDEFGATAKAPRWAIAYKYPARQATTQVESIVVQVGR
                     TGALTPVANLTPVQLAGTVVARATLHNEDEIRRLDVREGDWVNIEKSGEIIPKVLSVV
                     KSRRPRNTKPYEFPTSCPVCGGVVSRPEGEVVSRCVAADCSAQLKARLLHFASRRAMR
                     IEGMGDALAEQFVQTRMVRDVADLYKLTLEDVAALERKAEKSASNLIAQIEASKKRDL
                     PHLIYGLGVRHVGERTAALLARHFRSLDRLARATVEEIDDIHEIGLTVAESVRDWFDD
                     EGNRDLCERLKAAGVQTETAGGQQDGAFAGKQFVLTGKLEGMTRDEARALIESRGGRV
                     TSTVSKKTDYVVAGEEAGSKLEKALALKLNVIDERALVEMLG"
     gene            5484..5948
                     /locus_tag="VD968_16515"
     CDS             5484..5948
                     /locus_tag="VD968_16515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16045.1"
                     /translation="MSDNRKRALFLPFTLAIMFACATTALACSCEDPSTRKKFRAADA
                     VFLGRVVEVAPNDDRRFAEHPYRVRFAVEKSWKGGVGREASVVSHFDRPGSCGDLKFT
                     PGESYLIYAEREKGVLVIYIDCGPNRRAADAAAEIRKLNGFVFRLAARLSPF"
     gene            5969..6412
                     /locus_tag="VD968_16520"
     CDS             5969..6412
                     /locus_tag="VD968_16520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16046.1"
                     /translation="MSTTENSGAPQLAYTLFCDDVRLEVGNKLSLMGVFHQIVVQQFP
                     VTVMKFAVVSQWRGEGRHLSEVRIMTGDRQRPVVLSEPAPFEITPGGVANNISFFFNV
                     EFPAPGTYRVQTLIDSTLADEQELSLIQVNAAGAPILDATSEVIN"
     gene            complement(6470..6554)
                     /locus_tag="VD968_16525"
     tRNA            complement(6470..6554)
                     /locus_tag="VD968_16525"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6518..6520),aa:Leu,seq:cag)
     gene            complement(6706..7284)
                     /locus_tag="VD968_16530"
     CDS             complement(6706..7284)
                     /locus_tag="VD968_16530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16047.1"
                     /translation="MALTLALPVVASAQGRGRGRGKPSDIFVNGHDARDGRTDGRGPR
                     RDDGYYDGSYQRRRDRDYEREQRRREREQRREQRRNGGYDDGYYNNGSGYGYGRNRDN
                     YRNYGGSYELRQTALNAGYNNGMEEGRRDRERNDRYNFADEGDYRSATKDYSSRLGDR
                     SIYQRYFREAFERGYRDGYYGNNGYNDDYYDY"
     gene            7633..8370
                     /locus_tag="VD968_16535"
     CDS             7633..8370
                     /locus_tag="VD968_16535"
                     /inference="COORDINATES: protein motif:HMM:TIGR00044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HYE16048.1"
                     /translation="MAHEAEQTRATAVSERLEEIRARMESSARRAGRDSGEVTLVAVS
                     KTHPAEAVREATLAGVTDFGENRVQEAEAKIGELRAEAPDVRWHLIGHLQANKARRAA
                     RLFDVIQSVDSAALVMKLERACADDGRRRLDAFVQVSLADEATKSGASEEELPAVVEA
                     FKSCERVRLAGLMTLPPFFEDAERVRPYFRRLRGLRDRLARSGAFGGAEGHLSMGMSN
                     DFEVAVEEGATIVRVGTAIFGERLARG"
     gene            8377..8997
                     /locus_tag="VD968_16540"
     CDS             8377..8997
                     /locus_tag="VD968_16540"
                     /inference="COORDINATES: protein motif:HMM:NF014389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HYE16049.1"
                     /translation="MLILQALFNLVWYLIVATIVAVIALMVVRFVLNYADLNPFGRPV
                     ILVRRLTDPFVNPVRRSLLSLGAQPNIAPLVVVLLTILLGYFVLMLAVSLLDTAAGLL
                     LAATSGRAGGVVAMMGYLLYGLLSLYGLLIFVRIIFSWGQVSYTNRLMRFLVNATDPL
                     LTPLRRTIPPIGMFDISPIVAFILIWLFQAAIAMTLLRGWRLSFFL"
     gene            9005..9310
                     /locus_tag="VD968_16545"
     CDS             9005..9310
                     /locus_tag="VD968_16545"
                     /inference="COORDINATES: protein motif:HMM:NF014633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF167 domain-containing protein"
                     /protein_id="HYE16050.1"
                     /translation="MIEHTESGGAVTFRVKVVPRSSRASVAGEHGGALRVRVTSPPVE
                     GAANDELVRLLARELGVPARSVEIVAGHSTKNKTVRVEGASGELLLRLALPGESAGG"
     gene            9412..10155
                     /locus_tag="VD968_16550"
     CDS             9412..10155
                     /locus_tag="VD968_16550"
                     /inference="COORDINATES: protein motif:HMM:NF001030.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HYE16051.1"
                     /translation="MSGHSKWHTIKHKKGALDAKRGKLFTKLIKEITVAARTGGGDPD
                     ANARLRKAVSDAKAANMPNDTIARAIRRGTGEEEGVTYEEIVYEGYGPGGVAVMVDAM
                     TDNRNRTVAEIRHIFGKNGGNLGTAGAVNWMFEKKGYIVIEKSAKPEDELFEIVTDAG
                     AEDLRDDEDNFEVITSPEDFEAVLDAVKKAGVEPQVAEVEMVPKEYKRLEGAEAKQML
                     KLMEALEDHDDVQKVSANFDISEADMASA"
     gene            complement(10172..11092)
                     /locus_tag="VD968_16555"
     CDS             complement(10172..11092)
                     /locus_tag="VD968_16555"
                     /inference="COORDINATES: protein motif:HMM:NF020250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAF domain-containing protein"
                     /protein_id="HYE16052.1"
                     /translation="MPKLLSQNDDAAALAAPVSEGLVAVAREEAVRLRRAGVGTVRDF
                     VEAVSSPTFQGFDKLSAATGITTDRLAELLPAAYFARLEAQLLRKAERAEFNIPEAEP
                     EAEERVGLPARAWRGAKDFASGLIDHLLDVAIAGGVAVALLLVLRGLGAFPELPPPLG
                     LRGKVVVAVRDLKSGRRLRANELGSATLRARRNYFRSADKVEGLVLARDVPALSPLRH
                     EDLLRFQVVAKKDIARCEPLRPEDVELKWKQFEPRALLWAGKASGKVARMAIRADSVL
                     TEDMIKPAPAAGPTNTQGGDSPPQQAEPQC"
     gene            complement(11122..11382)
                     /locus_tag="VD968_16560"
     CDS             complement(11122..11382)
                     /locus_tag="VD968_16560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16053.1"
                     /translation="MRNAGAPAQFPATPLFQCSAACGQPQGEQPQSDDWEDVEPSGTW
                     PGEEAPPDSPEHGGYDPTAMEDGALPGKEDFPEGGDNGRDTW"
     gene            complement(11418..12827)
                     /locus_tag="VD968_16565"
     CDS             complement(11418..12827)
                     /locus_tag="VD968_16565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16054.1"
                     /translation="MTDILSAISGQFSRSLILGTFLPAVLFVILATFFVLPLFPDGWW
                     LWEQVSAGQTRGVIVLTLVTIVLSGLLYNLNIPITRFYEGYTWQRSRIGKSRTRHYRR
                     RLREAEELRARLWDVAEVLGRSPAAVAPGSPPAGAAAGVSAPEAEAQRLERARSVMDQ
                     AGRLIVSGFPVEEGSVLPTRLGNVIRSFEHYPRRQYRMAAITLWPRLVAKIDKDYAAQ
                     IDGAKTNVDFALNCSLLSLALALLLLFAGLWHPVALSSPSLLAPWLFKVLVFGAASLA
                     FYHSSIDRASEWGELVKGAFDLYRGELLKQLGFERRPAWLGEERELWEAISLQLIYAD
                     RPSGATLPAYASSGCFVRGRPAAIDLRVTRGVTPEPSGLVTVTVRVRNHNRNGLAATN
                     VVATDSLPPGFDYVWMSAKVGRRRRQASPPAASPPGDDVQWGEAQMTGSNPYVFYLGR
                     LEAQEEVFVQYAAAPQQKK"
     gene            complement(12870..13205)
                     /locus_tag="VD968_16570"
     CDS             complement(12870..13205)
                     /locus_tag="VD968_16570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16055.1"
                     /translation="MPKLTREQLTFIVADCIQTVSGAPDATEIVASVEKPLDYFGISD
                     STGVRVLTGLLARSHAVGLPKHGYAPREGVLEAVDVNTRVRDLVAMLLPGHEDYPGSH
                     GGGGNKDDY"
     gene            13367..13927
                     /gene="ruvC"
                     /locus_tag="VD968_16575"
     CDS             13367..13927
                     /gene="ruvC"
                     /locus_tag="VD968_16575"
                     /inference="COORDINATES: protein motif:HMM:NF000711.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HYE16056.1"
                     /translation="MRVLGIDPGSETTGWGVVEGDARRYRAVDFGTVRARARERFAAR
                     LLKVSLGLEELIERFRPEVCAVEEAFFAVNAKTALKLGHVRGVVLLAAERAGVEIAEY
                     APRLIKQTVVGYGAAEKQQVQEMVRVLLKLRTPPAPFDASDALAVAITHLHHAGAPRL
                     AAGATPPARAKLEALLAANPRRRTSR"
BASE COUNT         2341 a         4797 c         4780 g         2274 t
ORIGIN      
        1 gagctgcgca cgccgctcac ctccatactc ggcttcgccg aaatcctgct agaccaggaa
       61 gacctggacg gcgcgcagcg ccgcttctgc gaaaagattc agtcctccgg cttccagctt
      121 caggcgagcc tcaaccagct agttgacctc tcgcgcctcg aagccggcca gacagagctg
      181 ttcctgcacg agttctccct gcgcgagact ctccgcgagt cgtgcgcggc cgtggcgcgg
      241 cttgcgaaga agcagggcgt cgcgctcgac tgcgcgacct ctcccgaggt cagcgcgctc
      301 gtctccgacg agggcaagct ccggcaggtg ctctacaact tcctctcctt cgccatcggc
      361 cgcagcccct cgggcggcac ggtgcgcgtc ttcgcctcgc ccgacgaggg ggagcgcgtc
      421 cgcgtcgaga ttgccgacga gggcgagcca ctcaatgacc ccgcgcacct cttcgagccc
      481 gtggacgtgg acgcgcccaa cgagcgcggc acgaacatga acgagctcgg cctagtcatc
      541 gcccaccggc tgctcgacgt cctcggcggc tcagtccgcc tcgaagggcg cggcgagcgc
      601 ggcctctccg tccacctaac gttccccgcg cggccgactg aaaaatagtt acgggttaca
      661 ggtcagcggc gccaggtttt cgtttgaaac ttggggcacg ggactttaaa cttgtaactc
      721 ccaatcgtgc ttttcgactt cgagctggcc ggccgccgcg tgcgcctctg gcagaggccg
      781 ggcgagagct acaaccacgt gctgatgaag gcgctcggct acgcgatgtt cgtgggcgag
      841 ttcccccgct tgcagatcga ggcgggcgtc gggctgcgct acaagcccga cctcgtcgcc
      901 gaaagagacg gccgacgcgc ggcgggcgtg cgtttcgagt tctggggcga gtgcggcgcg
      961 gtctcgatgc ggaaggtcgc gtggctgctc aagcacggtc agttggagcg gctcgcgctc
     1021 ttcaagatag actgcggcgt tcagcccttc gtcagggagt tgcgcgaatc tgtggggccg
     1081 cgctaccgcg agggcgggcg cctcctgcta gtcaacttcg cgcccgacgt ggccgagcgc
     1141 gccgcatcgc gccgcgtcgg gcgcgtcccc gagggctggt acaccaagac tttcgtctga
     1201 cgccgtgggc gaagaagcga taacaatccg cgagtgcgag accgtcgagg agttcgacga
     1261 gtgcgtgcgt ctccagcgcg aggcgttcgg cctgcccgac cttgagcttt cgccgcgccg
     1321 ccacctgata gtcgcccgta gcgctggcgg ctggacgctc ggcgccttcg acggcccgcg
     1381 catggtcggc ttcgtgctca cgcaggtcgc cgcgcgcggc ccggaggtct tcggctactc
     1441 gcacatgatg gctgtggcga agggttacca gaaccgcggc atcggcgcgc gcctgaagtg
     1501 ggcgcagcgc cgtcgggcgc tcggcgaggg gcgccgcctc gtgaagtgga cttgggaccc
     1561 gatgcagtcg cgcaacgccc atttcaacat caaccggctc ggcgccgtcg tccgctctta
     1621 cgcggataat ttttacggga ctgactactc gaccgtgacg gggaagttcg gcgaggcgtc
     1681 ggggctgccg agcgaccggc tcgcggccga gtgggcgctc gactcgccgc gagttgaggc
     1741 gctcgcgcgc ggcgagacgc ccgcgccctt cggccccgcg ccgcgcgccg ccgtcgagat
     1801 tccgcccgac tggggctcgc tcgtgcgcga ggacgccgga gccgcgcgcg gcgagctatt
     1861 gcgcgtccgc gaggagttcc ggtcggcctt cgcttcgggg ctcgtctgcg ccggcttcga
     1921 gcgcgacggc gcgcggccca gatacctttt cttcagtgaa tagtgaatgc cgttcacccg
     1981 cttcgaccga tacgttgacc ggcaagcgcg ctcgttcgtg gagcgcttgc gggagttgtg
     2041 ccgtatgcct tcggtggcgg cgcgtgggac aggtatgcgg gccgtggccg agcacgtcga
     2101 gcagatgttg cagcgcgtcg gcgcaggcac gcgctcgttc aagacgggcg gcggcttccc
     2161 catcatctac ggcgagtgcg gcgcgggcga gcgatgcttc ctcatctacg gccactacga
     2221 cgtgcagccc gtcggccagt tgaccgaatg gtcttcgggc cctttcgcgg cggaggcacg
     2281 cgacggcgcg ctctacgcgc gcggcgcgtc gaacagcaag ggcgacctgg tcgccagagt
     2341 cgccgcggtc gaggcgtacc agaagagctt cggaaagctc cccgtctgcc ttcgctttat
     2401 tgtcgagggc gaggacgggc ttggcagccc cagcctctac cgcttcgccg ccgagaacca
     2461 ggagcttctg caagcggacg gctgcgtctg ggacgacggc tacaaggaca cgaacggccg
     2521 cctcgtcatt aacctcggct tcaagggcat aagcttcatc gagctgcgcg ccgtcggcgc
     2581 gcgcactgac ctgcactcga agtggggcgg cgtcgtgccg aaccccgcat ggcggctcgt
     2641 gcaggcgctg gcgacgatag tctcgcccaa aggcgtcatc acgattgacg gcttcggctc
     2701 gcacgtcgcg cccgtctcag cggacgaccg cgcgatgcta aagaccgtcg agctagacga
     2761 ggcgggcctc cgccgcgagt tccgcataca gcagtgggtc cgcgggatga ccggaaggga
     2821 gttgacgaag gagttgatat tcggcccgac ctgcaccatc tgcggcatgc gcacgggcca
     2881 cacggaggcc ggagctaaga ccgtcctgcc gggcgccgcc accgcccggc tcgacttccg
     2941 cctcgtcccc gacctcacgc ccgagctggt cgtaaagctt ctgaggaagc acctcgacac
     3001 gcgcggcttc aaggacatag agataaacga gctgggcagc gcgccctacg ccaagtcgtc
     3061 gccgaagtca acggtggcgc gcgccgcaat cgagagcgcc gcggacgttt acggctcgca
     3121 gcctgtcgtc tatccgctcg accccgcgag cggccccgtc ggcgcagtct gcggcgcgcg
     3181 ccagccgccc accccggtcg taagcttcgg cgtcagctac ttcggctcga acccccacgc
     3241 gcccgacgag aacatacgcc tcgacgattt catacagggc gtcaaatact tcggccgcgt
     3301 aatacaccgc ctcgccgaga tcaaagagga cgagggcgct gcgggcgagc gcgaggggtt
     3361 tgttcaattg agccgctgag cggcgcgccg aagagcgttt gcgccgcccc gcgccgccaa
     3421 cttatgatgg gcgcgccgtc atagcaatca agaaactcgc cgggcgaagt taaaaagtgc
     3481 cgaccagcgc gaagagcatc gggcaggaga tacaaaggct gcgcgcggag attctccgcc
     3541 acgaggagct ttactacgta cacgaccgcc cggagataac cgacgccgag tacgacgccc
     3601 ttctggagcg gctccgcgcc ctcgaagagg agcgccctga gttccggacg cccgacagcc
     3661 cgaccctgcg cgtgggcggg cgccccgccg agggcttcgc cgagcacgtc caccgccggc
     3721 agatgctctc gctcgacaac agctacaaca tcgaagacct gcgcgccttc gacgagcgct
     3781 gccgcaagct cgcagacgga cggcccttcg aatacgtcgc cgagcttaag attgacggcc
     3841 tctcgctctc tctgcactac gagcgcggcg tgctcgtgcg cggcgtgacg cgcggcgacg
     3901 gccgcgtcgg cgaggacgtg acgcagaacg tccgaaccat tcgaagcgtc ccgctcaggc
     3961 tgaaggggcc ggcgcccgcc gaggtcgagg ttcgcggcga ggcctacctt tcccggcgcg
     4021 ccttcgagcg aatcaacgcc gagcgcgagg aggccgacga gcccaagttc gcaaacccgc
     4081 gcaacgccgc cgccggcacc atccgccagc tcgacccgaa ggtcgtcgcg cggcgccgcc
     4141 tcgacttctt cgcctacgac cttttgagcg gcgaccgcaa ggccttcgac acccactggc
     4201 aggcgctcga atggctcgcg ggcgccggct tcgccgtcaa cccgcaccgc gagaagtgcg
     4261 ccgacatcga gcgggtcata gccttctgcg aacgcaccga ggccgagcgc gaccggctcg
     4321 actacgagat tgacggcgtc gtcgtcaagg tcaactcgac ggcgctacag gacgagttcg
     4381 gcgcgaccgc gaaggcgccg cgctgggcca tcgcctacaa gtaccccgcg cgccaggcga
     4441 cgacgcaggt cgaatcaatc gtcgtccagg tcgggcgcac gggcgcgctc acgcccgtcg
     4501 ccaacctcac gcccgtacag ctcgccggca ccgtcgtcgc tcgcgcgacg ctgcacaacg
     4561 aggacgagat caggcggctc gacgtgaggg agggcgactg ggtcaacatc gagaagagcg
     4621 gcgagattat cccgaaggtt ttgagcgtcg ttaagtcgcg ccgcccgcgg aacactaagc
     4681 cttacgagtt cccgacgagc tgccccgtct gcggcggggt cgtgtcgcgg cccgagggcg
     4741 aggtcgtctc gcgctgcgtc gcggccgact gctcagcgca acttaaggcg aggctcctgc
     4801 acttcgcctc gcgccgcgcg atgcgcatag agggcatggg cgacgcgctg gccgagcagt
     4861 tcgtccagac gaggatggtg cgcgacgtgg cagacctcta caagctcacg ctggaggacg
     4921 ttgccgcttt ggagaggaag gcggagaagt ctgcctcgaa cctcatcgcg cagatagagg
     4981 cgagcaagaa gcgcgacctg ccgcacctaa tctacggcct cggcgtacgc cacgtcggcg
     5041 agcgcaccgc ggcgctgctc gcgcgacact tccgctctct cgaccgcctc gcgcgggcca
     5101 ctgtcgagga gattgacgac atacacgaga tcggcctcac ggtcgccgag tcagtgcgcg
     5161 actggttcga cgacgagggc aaccgcgacc tgtgcgagag gttgaaagcg gcgggagtcc
     5221 agacggagac ggcgggcggg cagcaggacg gggccttcgc cggcaagcag ttcgtcctga
     5281 cgggcaagct cgaaggcatg acgcgcgacg aggcgcgcgc cctcatcgag tcgcggggcg
     5341 ggcgcgtcac ctcgaccgtc agcaagaaga ccgactacgt cgtggcgggc gaggaggccg
     5401 gctcgaagtt ggagaaagcg ctggcgctca agctgaacgt gattgacgag cgggcgctcg
     5461 tcgagatgct gggttagaat accgtgagcg acaatcggaa gcgcgcactg tttttgccct
     5521 tcacgctggc gataatgttc gcgtgcgcta cgactgcgct cgcgtgctcc tgcgaagacc
     5581 cgagcacgcg aaagaagttc agggcggccg acgcggtctt cctcgggcgc gtcgtcgagg
     5641 tcgcgccgaa cgacgaccgg aggttcgctg agcaccctta ccgggtccgt ttcgccgtcg
     5701 agaagagctg gaaggggggc gtcgggcgcg aggcgagcgt cgtctcgcac ttcgaccggc
     5761 ccggctcctg cggcgacctc aagttcacgc ccggcgagag ctacctcatc tacgccgagc
     5821 gcgaaaaggg cgtgctcgtc atctacattg actgcggccc gaaccggagg gccgccgacg
     5881 ccgcggccga gataaggaag cttaacggct tcgtgttccg cctggcggcg cgactgtcgc
     5941 cgttctgatt cggtagaagg aggcgcattt gagcacaaca gagaattcgg gagcgccgca
     6001 actggcctac acgctcttct gcgacgacgt gcggctggag gtcggcaaca aactctcgct
     6061 gatgggcgtg ttccaccaga tagtcgtgca gcagttcccc gtcaccgtga tgaagttcgc
     6121 ggtggtgagc cagtggcgcg gcgagggccg ccacctctcc gaggtgcgta taatgacggg
     6181 cgaccgccag cgccccgtag tgctctcaga gcccgcgccc ttcgagataa cgcccggcgg
     6241 cgtcgccaac aacataagct tcttcttcaa cgtcgagttc cccgcgcccg gcacgtaccg
     6301 cgtccagacg ctcatagact ccacgctcgc cgacgagcag gaactctccc tcatacaggt
     6361 caacgccgcc ggcgccccaa tcctcgacgc cacctccgaa gtcataaact agagaggccg
     6421 ggggctggtt aagatgtatg tcttaaccag cccccggcct ctgtttttat gcggatgagt
     6481 ggactcgaac caccacgacc taagcggcca ctagctcctg aggctagcgc gtctaccaat
     6541 tccgccacat ccgcgcgggc agggaaaata ctataaggac gggcgcgagc gggtgtcaag
     6601 ccgcacgccc agcgcgaacg aaaagtggcc gcggggctcg cgagccccgc ggccactttt
     6661 ccccccttgc ccgaaacttt caactaaggg cgggccgtgg acggcttagt agtcgtagta
     6721 gtcgtcgttg tacccgttgt tgccgtagta gccgtcgcgg tagccgcgct cgaacgcctc
     6781 acggaagtag cgctggtaga tggagcggtc gccgaggcgc gagctgtagt ccttcgtcgc
     6841 gctgcggtag tcgccctcgt ccgcgaagtt gtagcggtcg ttgcgctcgc gatccctgcg
     6901 gccctcttcc atgccgttgt tgtagcccgc gttcagcgcc gtctggcgca actcgtacga
     6961 gccgccgtag ttcctgtagt tgtcgcggtt gcggccgtaa ccgtagccgc tgccgttgtt
     7021 gtagtagccg tcgtcgtagc cgccgttgcg gcgctgctcg cgcctctgct cgcgctcgcg
     7081 gcgcctctgc tcgcgctcgt aatcgcggtc gcggcggcgc tggtaactgc cgtcgtaata
     7141 gccgtcgtcg cgcctgggcc cgcgcccgtc cgtgcgcccg tcgcgagcgt cgtggccgtt
     7201 gacgaaaatg tcagatggct tgccacggcc cctgccgcgc ccctgcgcgg aggcgacgac
     7261 cggcagtgcc agcgtcagcg ccataacaag catcagcgta cgcgtgaaca agctcagacc
     7321 tttgcttctc atcttccgaa acccctttcc ctttcaacaa gcctaaccat cgctttgaat
     7381 gacccgttaa cctgtgcgcc gttagactta caatctgcgt gccagcggcc ggggccggga
     7441 aaacggcgcc ggaactgccc cgaggcgagc catttagggc aggcgcgtgc acgataccgt
     7501 gccgcgcccc accgttccgt gtgtcacaag gcaggcctcg cggtggaggg aaaggggacg
     7561 attcggggcc gggttgcagc cgcccgcggc cgcttgtata gtcttcccga agcccgcaac
     7621 acgaacgcaa caatggccca tgaagcggag caaacacgcg cgacggccgt cagcgagcgc
     7681 ctggaagaga ttcgggctcg catggagtcg agcgcgcgca gggcgggccg cgactccggc
     7741 gaggtgacgc tcgtggccgt cagcaagaca caccccgcgg aggccgtccg cgaggccaca
     7801 ctcgcgggcg ttacggactt tggcgagaac cgcgtgcagg aggcggaggc caagatagga
     7861 gagctgcgcg cggaagcccc cgacgtgcgc tggcacctga taggccacct acaggcgaac
     7921 aaggcccgcc gcgccgcgcg cctcttcgac gtaattcagt cggttgactc ggccgcgctc
     7981 gtgatgaagt tagagcgcgc gtgcgccgac gacgggcgcc gccgcctcga cgccttcgtg
     8041 caggtgagcc tcgccgacga ggctaccaag agcggagcga gcgaggagga gcttccggcc
     8101 gtcgtcgagg ctttcaagag ttgcgagcgc gtgcgcctcg cggggctgat gacgctgcca
     8161 cccttcttcg aggacgcgga gcgcgtgcgc ccatacttcc gcaggctgcg cgggctgcgc
     8221 gaccgcttgg cccgctcggg cgccttcggc ggagcggagg gccacctctc catggggatg
     8281 agcaacgact tcgaggtggc cgtcgaggag ggggcgacga ttgtgcgcgt gggtacggcc
     8341 atcttcggcg agaggctggc gcgcggctga aaccttatgc taatacttca ggctctcttc
     8401 aacctcgtct ggtacttgat agtcgcgacc atcgtcgcag ttatcgcgct gatggtcgtg
     8461 cgcttcgtgc tcaattacgc cgacctgaac cccttcggcc gccccgtcat acttgtccga
     8521 aggctgaccg accccttcgt taaccccgtc aggcgctcgc tcctgagcct gggcgcgcag
     8581 cctaacatcg cgccgctcgt cgtggtgctg ttgacgatac tgctgggcta cttcgtgctg
     8641 atgctggcgg tcagcctgct cgacacggcc gcggggcttc tgctcgccgc gactagcggc
     8701 cgtgccggcg gcgtagtggc gatgatggga tacctgctct acgggctgct ctcgctctac
     8761 ggcctgctca tcttcgtgcg cataatcttc tcgtgggggc aggtgagtta cacgaaccgc
     8821 ctcatgcgct tcctcgtgaa cgccacagac cctctgctca ccccgctgcg gcggacgata
     8881 ccgccgatag gcatgttcga catctcgccc atcgtcgcct tcatactcat ctggctcttc
     8941 caggcggcga tagccatgac gctcctgcgc ggctggcgtc tgagcttctt cctgtgagcg
     9001 gcgcgtgatt gagcacacag agtcgggcgg ggccgtcaca ttccgcgtga aggtcgtgcc
     9061 gcgctcgtcg cgcgcgagtg tggcaggcga gcacggcggc gccctgcgtg tgcgcgtcac
     9121 gtcgcctccc gtcgagggcg ccgcaaacga cgagcttgtg cgacttctcg cgcgcgagct
     9181 gggcgttccg gcgcgctcgg tcgagatagt cgcgggccac tcgactaaga acaagacggt
     9241 gagggtcgag ggcgcgagcg gcgagctact cttgcggctc gcgcttccgg gcgagagcgc
     9301 cgggggctga gaaactccga actcttctcg cggttgcggc cccgaaaaac agcgtgatat
     9361 attccgggct ccgcacgccc gtaactttac tttcataagg aaccatccga aatgtcaggg
     9421 cactccaagt ggcataccat caagcacaag aagggcgctt tggacgccaa gcgcggcaag
     9481 ctcttcacca agctgattaa agagataacg gtcgcggcgc gcacgggcgg cggcgacccg
     9541 gacgccaacg cgcgcctgcg caaggcggtc tccgacgcga aggccgccaa catgccgaac
     9601 gacaccatcg cgcgcgcaat acgccgcggc acgggcgagg aggagggcgt cacctacgaa
     9661 gagatagtct atgagggcta cgggccgggc ggcgtcgccg tcatggttga cgcgatgacg
     9721 gacaaccgca accgcaccgt cgccgagata cgccacatct tcggcaagaa cggcggcaac
     9781 ctcggcacgg ccggcgccgt caactggatg ttcgagaaga agggctacat cgtcatcgag
     9841 aagtccgcga agcccgagga cgagctgttc gagatagtca cggacgcggg cgccgaagac
     9901 ctgcgcgacg acgaggacaa tttcgaggtc ataacctcgc ccgaggactt cgaagccgtc
     9961 cttgacgccg tgaagaaggc gggcgtcgag ccgcaggtcg cagaggtcga gatggtgccg
    10021 aaggagtaca agcgcctcga gggcgccgag gccaagcaga tgctcaagct catggaggcc
    10081 ctcgaagacc acgacgacgt gcagaaggtc tccgccaact tcgacatcag cgaggccgac
    10141 atggcctccg cctgagtgcg cgccggcccc ttcaacactg gggctcggcc tgttggggcg
    10201 gcgagtcgcc gccctgagtg ttggttgggc cggcggccgg cgccggctta atcatgtcct
    10261 ccgtcaggac gctatccgcg cgtatcgcca tgcgcgccac cttccccgaa gccttcccgg
    10321 cccagagcag agcgcgcggc tcgaactgct tccacttcaa ctccacgtct tcgggccgca
    10381 gcggttcgca gcgcgcgatg tccttcttcg cgacgacctg aaagcgcaac aggtcttcgt
    10441 ggcgcagggg agaaagcgcc ggcacgtcgc gcgcgagcac gagcccctcg accttgtcgg
    10501 ccgacctgaa gtagttgcgc cgcgcccgca gcgtcgccga gcccagctcg ttcgcgcgca
    10561 gccgccggcc tgacttcaaa tccctcacgg ccaccaccac cttcccgcgc aggcccagcg
    10621 gcgggggcag ctccgggaac gccccgaggc cgcggagcac gaggagcagt gcgacggcga
    10681 cgccccccgc aatcgccacg tcgagcaggt ggtcaatgag accgctagcg aagtctttcg
    10741 ccccgcgcca cgcgcgggcc ggcagcccga ctctctcttc agcttcgggc tcggcctcgg
    10801 gtatgttgaa ctcggcccgc tccgccttgc gcaggagttg ggcttcgagc cgggcgaagt
    10861 aggcggccgg gagcaactcc gcgagcctgt ccgtagtgat gcccgtcgcg gccgagagct
    10921 tgtcgaagcc ctggaaggtc ggggaactta ccgcctcgac gaagtccctc acggtcccca
    10981 cgcccgcgcg ccgtagtcgc accgcctcct cacgggcgac ggccacgagg ccctcggaga
    11041 ccggggcggc gagcgccgcg gcgtcgtcat tctggctcag cagttttggc atgcccttca
    11101 cgcctcagcc ggggccgtcg ctcaccacgt gtcccggccg ttgtcgccgc cttccgggaa
    11161 atcttccttg ccgggcagcg cgccgtcctc catagcagtc gggtcgtagc cgccgtgctc
    11221 aggcgagtcg ggcggcgcct cttcgcccgg ccacgtaccc gaaggttcga catcttccca
    11281 gtcgtcggat tggggctgct cgccctgcgg ctggccgcag gcggcggagc attgaaagag
    11341 tggggtcgca gggaactgcg ctggcgcgcc ggcgtttcgc atgacttgac tcctcaggtt
    11401 tgctgggctg cgccgtctca cttcttctgc tgaggcgccg ccgcgtactg cacgaagact
    11461 tcctcctgcg cttcgagcct gcctaagtag aagacgtaag ggttcgagcc ggtcatttgc
    11521 gcctcgcccc attgcacgtc gtcgcccggc gggctggctg cgggtgggga cgcctgccgc
    11581 ctcctcctgc ctaccttcgc cgacatccac acgtagtcga agccgggcgg gagcgagtcc
    11641 gtcgccacca cgttcgttgc ggcgagcccg ttcctgttgt ggttgcgcac gcgaaccgtc
    11701 accgtgacga ggccgctcgg ctccggggtc acgccgcgcg tcacgcgcag gtcaatcgcg
    11761 gcgggcctgc cgcgcacgaa gcacccggag gaggcgtagg cggggagcgt cgccccggag
    11821 ggcctgtcgg cgtagatgag ttggagcgag atggcctccc atagctcgcg ctcctcgccg
    11881 agccacgcgg gccgccgctc gaagcccaac tgcttgagaa gctcaccgcg gtagaggtcg
    11941 aacgcgccct tgacgagctc gccccactcc gacgcgcggt caatcgagga gtggtagaag
    12001 gccagcgagg ccgccccgaa gacgagcacc ttgaagagcc acggcgccag cagcgaaggc
    12061 gaggagagcg cgaccgggtg ccagaggccc gcgaagagca gcagcagcgc gagcgccaga
    12121 gacagcagag agcagttgag tgcgaagtca acgttcgtct tggcgccgtc tatctgcgcg
    12181 gcatagtcct tgtcaatctt ggcgacgagg cgcggccaga gcgtgatggc agccatcctg
    12241 tactggcgcc gcgggtagtg ctcgaagctg cgtatgacgt tgcctagccg agtcgggagc
    12301 accgagccct cctcgacggg gaagccgctg acgatgagcc tcccggcctg atccatcacc
    12361 gagcgcgccc gctcgagccg ctgcgcctcg gcctccggcg cgctaactcc cgcggcggcg
    12421 cccgccggcg gcgagccggg ggccaccgcg gcgggcgagc ggccgagcac ctcggccacg
    12481 tcccagaggc gcgcgcgcag ctcctcggcc tcgcgcaggc gcctgcggta gtggcgcgtg
    12541 cggctcttgc ctatgcgcga cctctgccac gtgtagccct catagaagcg cgtgataggt
    12601 atgttgaggt tgtagagcag gccggacagc acaatcgtca ccagagtcag tacgatcacg
    12661 ccgcgggtct gcccagcgct cacctgctcc cagagccacc agccgtcggg gaagagcggc
    12721 agcacgaaga aggtggcgag gatgacgaag agcaccgccg ggaggaacgt cccgaggatg
    12781 agcgatctgc tgaactgccc ggagatggcc gagaggatgt cggtcaagtt tttccctcgc
    12841 agtctcgcgc gcgggctcgg gccggggcct cagtagtcgt ccttgttgcc gcccccgccg
    12901 tggctgccgg gatagtcctc gtggcccggc aggagcatcg cgacgaggtc tctgaccctg
    12961 gtgttaacgt ccacggcctc gagcacgcct tcgcgcgggg cgtagccgtg tttagggagc
    13021 ccgaccgcat ggctcctggc gagcagcccc gtcagcaccc tcacgcccgt gctgtcggag
    13081 atgccgaagt agtcgagcgg cttttcgacg ctagcgacta tctccgtcgc gtccggggct
    13141 cccgagacag tctggatgca gtccgcgacg atgaaggtta gctgttctct cgtgagtttg
    13201 ggcatgaggt taaacctccc tgtcagaggg cctacggtga gaggcgcggc gacgccgcgc
    13261 gttcgaggag gcgggcgagg ctaaggcagg gattatagtt cggccctgcg ccaagtcaac
    13321 attttaatcc gcttccaatt cgcgctcctc tggggtataa gggcgcgtgc gagttttggg
    13381 cattgacccc ggcagcgaga cgacggggtg gggcgtcgtc gagggcgacg cgcgccgcta
    13441 cagggcggtg gatttcggga ctgtgagggc gagggcgcgc gagcggttcg cggcgcggct
    13501 cctgaaggtg agcttggggc tggaggagtt aatagagcgc ttccggcccg aagtgtgcgc
    13561 cgtagaggag gccttcttcg cggtcaacgc gaagaccgcg ctcaagctcg gccacgtgcg
    13621 cggcgtggtg ctgcttgcgg ccgagagggc gggcgtggag attgcggagt acgcgccgcg
    13681 cctcatcaag cagacggtcg tcggctacgg cgcggccgag aagcagcagg tgcaggagat
    13741 ggtgcgcgtg ctgctgaagc tgcgcacgcc gcccgcgccc ttcgacgcct cggacgcgct
    13801 cgccgtcgcc atcacgcacc tgcaccacgc cggcgcgccg cgcctcgccg cgggcgcaac
    13861 cccgcccgcg cgcgccaagc tcgaagccct gctcgcggct aaccctcgcc gccgcacgtc
    13921 gcgctgagca cgaaagtttc gcctctcgga ttgcacgccg cttcgcctcg cggcttccac
    13981 ttaaaactcg atctcccacc ctcacccttc aaaggagagc gaagccatgt cccgaagcct
    14041 cttgcgcctt tgccttcgac ttctgttact caccatagtc gcgctcgccg cccccgccgc
    14101 gtcggcgcag agggggcgca gagcccccgc gggcgggcgc gcggccgtcg tggttgacga
    14161 gcgccttgcc gcgctcaggg acgcgcccga tc
//
LOCUS       DASPKR010000618         5386 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1130289, whole genome shotgun sequence.
ACCESSION   DASPKR010000618 DASPKR010000000
VERSION     DASPKR010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5386)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5386
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1130289"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..355)
                     /locus_tag="VD968_16580"
     CDS             complement(<1..355)
                     /locus_tag="VD968_16580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16057.1"
                     /translation="MKSLVKQLLILALLSGAAAAQTPGAGAAKRYSQDGLSFDYPDGW
                     VLTDKSTPQAQHLVLARAGNSAVIMVIALREVITSKEQLAAAREAVTKPYATTLAQQF
                     GVKEVPANATQCQPLG"
     gene            complement(377..1645)
                     /locus_tag="VD968_16585"
     CDS             complement(377..1645)
                     /locus_tag="VD968_16585"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF005589.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-[acyl-carrier-protein] synthase
                     family protein"
                     /protein_id="HYE16058.1"
                     /translation="MVKRFASRPRRVVITGLGCVTPVGLGRAAFWRALREGESGVRRI
                     EGFDVSSSPVRIAGQARGFDWEAELKQKDRRHVARTVPLALAAARGALEDAGLQPSDF
                     SLEERRAAGVLIGTGGGGLEFTERQYKYLYTDAPGTASIYTIPSSTHGGLSSELSMAF
                     GLRGLSHVVSTGCTSSTDAIAYAAEHVALGRQDLMLAGGADAPLAPGILAGFCLMKVL
                     TEEWNDEPERASRPFSRDRSGMVLGEGAWVFVLEEYESARRRGAEIYAEITGYGATCD
                     AYHRVRLEDTGEEPARAMRLALESAGRDAAEIDYVNLHGTSTVLNDRIETQALKLALG
                     GAARRVPMSSTKSQVGHPQGASGAAGLAAALCAVTTGVIPPTINLDEPDPDCDLDYTP
                     NSAREGSVRVALCNCIGFGSKNSALVVERV"
     gene            complement(1714..2190)
                     /locus_tag="VD968_16590"
     CDS             complement(1714..2190)
                     /locus_tag="VD968_16590"
                     /inference="COORDINATES: protein motif:HMM:NF016763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HYE16059.1"
                     /translation="MTTRRDKRSADRLWRYGPVVVWAGLIFLASTGNFSASNTSRFIR
                     PLLLWLFPDITEATLLLVHFYVRKAAHFTEYAVLALLSARALLTSSRAALRTLWAPAS
                     FALVAACSLLDEYQQSFQPTRTGTIYDSLLDMAGGATALAFAALWRLRARRGRRAA"
     gene            complement(2260..3156)
                     /gene="atpG"
                     /locus_tag="VD968_16595"
     CDS             complement(2260..3156)
                     /gene="atpG"
                     /locus_tag="VD968_16595"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit gamma"
                     /protein_id="HYE16060.1"
                     /translation="MANLLDIRRRIKSVKNTQQITKAMKMVSAARLRRAQERAVAARP
                     FATKMTEVLTGLASRAGEDFSHPLLDARGDERYLLVLVTADKGLAGAFNANLIKAAQA
                     FVREHEGKSVEFLAVGRRGYDFFRRRPVRLAGEYVGLTAKGRIEHAEALEVARDVMRR
                     FEEDEEIDKVFIIFNEFRSVISQRVVVEQILPVSRAEEGEEETAANDPNRPQTFVEYI
                     YEQPPEEIFSQLLPRLVETQIYRALLESVASEQGARMTAMDSASKNAGELIQSLTLNM
                     NRIRQASITREIIEIVSGAAAL"
     gene            complement(3219..4775)
                     /gene="atpA"
                     /locus_tag="VD968_16600"
     CDS             complement(3219..4775)
                     /gene="atpA"
                     /locus_tag="VD968_16600"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HYE16061.1"
                     /translation="MDPIRANEISDIIRQQIENFDAGVTVTEVGTVIKVGDGIAEVHG
                     LEKVMAGELLEFPHDVRGLALNLEEDKVGVVLFGEYQQVKEGDTVKRTGRIMSIPVGD
                     SVIGRVVNALGVPIDERGPIAADAYNPLERIAPGVVDRQPVKEPLQTGLKAIDSMVPI
                     GRGQRELIIGDRQTGKTAVALDAVINQKGKDVICIYVAVGQKASTVAQVIKTLQDFDA
                     MSYSIVVSASASDPAAMQYLAPYAGAAIGEYFRDSGRHVLTIYDDLSKHAAAYREISL
                     LLRRPPGREAYPGDVFYLHSRLLERAAKLSESKGGGSLTSLPIIETQAGDISAYIPTN
                     VISITDGQIFLEADLFNSGIRPAINVGNSVSRVGGSAQIKAMKQVAGTLRLDLAQYRE
                     LAAFAQFGSDLDRSTQAQLARGQRLVEILKQPQYRPMEVEKQVLIIWAATTGQLDDIP
                     VEHVRRFEDDFLRFVETAHPGILNGIREKKSLDDQLRNDMGQAVTDFKATWKETALAP
                     QGATAAAVTA"
     gene            complement(4813..>5386)
                     /gene="atpH"
                     /locus_tag="VD968_16605"
     CDS             complement(4813..>5386)
                     /gene="atpH"
                     /locus_tag="VD968_16605"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP synthase F1 subunit delta"
                     /protein_id="HYE16062.1"
                     /translation="RRRAGRGRALSLQTIARRYAAALADVVTQSGEASEVREELLAWD
                     EMMRTNAQLLEVFRHPTIPYEQKRGVLNQLVARARVRPTTANFLQVLLQNHRLADLGE
                     INRQFAQELDRRAGVVTARVTTARPLPEGAREALGARLGQLTGSRVRLQFDVDSDLIG
                     GVVTRIGSTVYDGSVRSRLDELRRKMVGER"
BASE COUNT          854 a         1794 c         1815 g          923 t
ORIGIN      
        1 tacccagcgg ctgacattga gtcgcgttgg ctggcacctc cttgacgccg aactgttgcg
       61 ctagcgtcgt ggcgtaaggc ttcgtcaccg cctcgcgcgc ggccgcaagc tgctctttgc
      121 tcgtgattac ttcgcggagc gcgattacca tgatgacggc ggagttcccc gcgcgcgcga
      181 gcaccaagtg ctgggcctgc ggcgtgctct tgtcggtcag aacccacccg tcggggtagt
      241 cgaacgagag gccgtcctgg gagtagcgct tcgcggcgcc tgcgcccgga gtctgggccg
      301 ccgcggcgcc ggacaggagg gccaggatta ggagctgctt cacgaggctt ttcatcaaca
      361 cgtccctctt ccggcttcag accctctcga cgactagcgc gctgttttta gagccgaagc
      421 cgatgcagtt gcacagcgcc acgcgcacgc tgccctcgcg cgcgctattg ggcgtgtagt
      481 cgaggtcgca gtcggggtcg ggctcgtcga ggttgatggt gggcgggatg acgccggtcg
      541 tgacggcgca gagcgctgcg gcgaggcccg cggcgccgga tgcgccctgc gggtggccta
      601 cctgcgactt cgtcgaagac atcggcacgc gccgggccgc gccgccgagc gcgagtttga
      661 gcgcctgcgt ctcgatgcgg tcgtttagca cggtcgaggt gccgtgcagg ttcacgtaat
      721 caatctccgc cgcgtcgcgc ccggcggact caagcgcgag ccgcatcgcg cgagccggct
      781 cctcgcccgt gtcttcgagc cgcacgcggt ggtaggcgtc gcacgtcgcg ccgtagcctg
      841 taatctctgc gtagatttcg gcgccgcgcc gccgcgcgct ctcgtactct tcgagcacga
      901 agacccacgc accctcgccc aacaccatac ccgagcggtc gcgcgagaag ggccgggagg
      961 cccgctccgg ctcgtcgttc cactcctcgg tcaagacctt catcaggcag aagcccgcga
     1021 gtatgccggg cgcgagcggc gcgtccgccc cgcccgcgag catcaagtcc tgccggccga
     1081 gcgcgacgtg ctcggcggcg taggcgatgg cgtcggtcga gcttgtgcag cccgtcgaga
     1141 cgacgtgcga gaggccgcgc aggccgaacg ccatagaaag ctcggacgag agcccgccgt
     1201 gcgttgagga aggaatggtg tagatgctcg ccgtgcccgg cgcgtccgtg tagaggtact
     1261 tgtactgccg ctcggtgaac tcgaggccgc cgccgcccgt cccgataagg acgccggcgg
     1321 cgcgcctctc ttcgagcgag aagtcggagg gctgaagccc cgcgtcttcg agcgcgccgc
     1381 gcgcggcggc gagcgcaagc gggacggtgc gcgcgacgtg gcggcggtct ttctgcttta
     1441 gctccgcctc ccagtcgaag ccgcgcgcct gccctgcgat gcggacgggc gaagaggaaa
     1501 cgtcgaagcc ctcgatgcgg cggacgccgc tctccccctc acgcagcgcg cgccagaagg
     1561 ccgcgcgccc caagcctacg ggcgtcacgc agcccagccc cgtgattacg acgcggcgcg
     1621 gccgtgaggc gaaacgcttc accataaaat cagtcctacg gaaaaccgaa aagcattctg
     1681 agctggagac gcgataagca tatcacggag gggtcaggcc gcgcgccgtc cgcggcgggc
     1741 gcgcaggcgc cacagcgcgg cgaaggcgag cgccgtggcg ccgcccgcca tgtcgagcag
     1801 gctgtcgtag atggtgcctg tgcgcgtcgg ctggaagctc tgctggtact cgtcgagcag
     1861 cgaacaggcg gcgacgagcg cgaaggaggc gggcgcccac agcgtgcgca aggccgcgcg
     1921 cgaagacgta aggagcgccc gcgcagagag cagggcgagg acggcatact cggtgaagtg
     1981 cgcggccttg cggacgtaga agtgaaccag aaggagcgtc gcttcggtga tgtcggggaa
     2041 gagccacagg agcagcgggc ggatgaagcg cgaggtgttc gacgccgaga agttccccgt
     2101 cgaggccagg aagatgaggc ccgcccagac gacgacgggg ccatagcgcc acagccgatc
     2161 agcagatcgt ttgtctcgcc gggttgtcat caaagaaaaa gagggaagcg actcgccgtg
     2221 cgcttccctc cctcgtgctt gtttagcggc cgcgcccgcc tatagcgcgg cggcgccgga
     2281 gacgatttcg ataatctcgc gcgtgatgct cgcctgccgt atgcggttca tgttgagcgt
     2341 gagcgactgt atcagctcgc ccgcgttttt cgacgccgag tccatcgccg tcatgcgcgc
     2401 gccctgctcg ctcgccaccg attcgagcag cgcgcggtaa atctgcgtct cgacgaggcg
     2461 cggcaaaagc tggctgaaaa tctcctcggg cggctgctcg tagatgtact cgacgaaggt
     2521 ctgcggcctg ttagggtcgt tggcggccgt ctcttcctcg ccctcctcgg cgcgcgagac
     2581 gggcagtatc tgctcgacga cgacgcgctg cgagatgacg gagcggaact cgttgaagat
     2641 gatgaagacc ttgtctatct cctcgtcctc ctcgaagcgg cgcatcacgt cgcgcgccac
     2701 ttcgagcgcc tcggcgtgct cgattcgccc cttggcggtc aggccgacgt actcgccggc
     2761 tagccggacg gggcggcggc ggaagaagtc gtaacccctg cggccgaccg cgaggaactc
     2821 gactgacttg ccctcgtgct cccggacgaa cgcctgggcc gccttgatga ggttagcgtt
     2881 gaaggccccg gccagcccct tgtcggccgt gacgagcacc agcagatagc gctcgtcgcc
     2941 gcgcgcgtcc aggagcgggt ggctgaagtc ctcgccggcc cgcgaggcga ggcccgtcag
     3001 cacctccgtc atcttcgtgg cgaacgggcg cgcggcgacc gcacgctcct gcgcgcgcct
     3061 cagcctcgcc gccgagacca tcttcatggc cttcgttatc tgctgcgtgt tcttgaccga
     3121 cttgatgcgc cggcggatgt ctaacaggtt agccatacga gagagtcaag agcgacgggc
     3181 gaagcgagtg ttgacttcgc cctcgcccgc cagcgctttt aagccgtgac ggccgcggcc
     3241 gtcgcgccct gcggcgcgag cgcagtctcc ttccacgtcg ccttgaagtc cgtgacggcc
     3301 tgccccatgt cgttgcgcaa ctggtcgtcg agggacttct tctcgcggat gccgttcagt
     3361 atgccggggt gcgcagtctc tacgaagcgc aggaagtcgt cctcgaagcg gcgcacgtgc
     3421 tcgacgggga tgtcgtcgag ctggcccgtc gtcgccgccc agatgatgag aacctgcttc
     3481 tccacttcca tcggccggta ctgcggctgc ttcagaatct caacgaggcg ctgcccgcgc
     3541 gcgagctgcg cctgcgtgga gcggtcgagg tctgagccga actgcgcgaa ggccgccagc
     3601 tcgcggtact gcgccaggtc gagacgcaga gttcccgcca cctgcttcat cgccttaatc
     3661 tgcgccgagc ctccgacgcg cgacaccgag ttgccgacgt taatcgccgg gcgtatgccg
     3721 gagttgaaga ggtcggcctc gaggaatatc tggccgtcag taatcgagat gacgttcgtc
     3781 gggatgtagg ccgagatgtc gccggcctgc gtctcgatga tgggcaagga ggtgagcgag
     3841 cccccgccct tcgactccga gagcttcgcc gcgcgctcta gcaggcgcga gtgcaggtag
     3901 aacacgtcgc cggggtaagc ttcgcggccc ggcggacggc gcagcaggag cgaaatctcg
     3961 cggtaggcgg cggcgtgctt cgacaggtcg tcgtatatgg tgagcacgtg gcggcccgag
     4021 tcgcggaagt actcgccgat ggccgcgccg gcgtagggcg cgaggtactg catcgccgcc
     4081 gggtcggagg ccgaagcgct gacgacgatg gagtaactca tcgcgtcgaa gtcctggagg
     4141 gtcttaatca cctgcgccac ggtcgaagcc ttctggccga cggcgacgta gatgcagatt
     4201 acgtccttgc ccttctggtt gatgacggcg tcgagcgcga cagccgtctt gccagtctgg
     4261 cggtcgccga ttatcagctc gcgctggccg cgccctatgg gaaccatcga gtcaatggcc
     4321 ttcaggcccg tctgcaacgg ctccttcacg ggctggcggt caacgacgcc gggcgcgatt
     4381 cgctccagag ggttgtaggc atcggccgcg atggggccgc gctcgtcaat cggcacgccg
     4441 agcgcgttga cgacgcggcc gatgaccgag tcgccgacgg ggatgctcat gatgcgcccc
     4501 gtgcgcttga ccgtgtcgcc ctccttgacc tgctggtact cgccgaagag cacgacgccg
     4561 accttgtcct cttcgaggtt cagggctagc ccccgcacat cgtgcgggaa ctctagcagc
     4621 tcgcccgcca tcaccttctc gaggccgtgg acttcggcga tgccgtcgcc cacctttatg
     4681 acagtgccga cctccgtgac ggtgacgccc gcgtcgaagt tctcgatctg ctgccttatg
     4741 atgtcgctaa tctcgttggc tcttattggg tccatgattg tctgctcgat cccttcgaaa
     4801 taccgaaagc ccctacctct cgcccaccat ctttcgcctc agctcgtcga gccggctgcg
     4861 aaccgacccg tcatagacgg tcgagcctat gcgcgtgacc acgccgccga tgaggtcgct
     4921 gtcaacgtcg aactgtagtc gcacgcggct gcccgtaagc tggcccagcc gagcgccgag
     4981 tgcttcgcgc gcgccctcgg gcagcggtcg cgccgtagtc acgcgcgcgg tcacgacgcc
     5041 cgcgcggcgg tctagctcct gcgcgaactg cctgttgatc tcgcccaggt ctgcgaggcg
     5101 atgattttgc aggaggactt gcaggaagtt cgccgtcgtc ggccgcacac gcgcacgcgc
     5161 gaccagttga ttcagcacgc cgcgcttctg ctcgtaagga atagtggggt ggcggaagac
     5221 ttcgaggagc tgcgcgttag tacgcatcat ctcgtcccag gccaacaact cctcgcgaac
     5281 ttcggaggcc tcgccgctct gcgtcaccac gtcagctagg gccgccgcgt agcggcgcgc
     5341 aatcgtctgc aagctcaacg cccgacccct cccagctctt cgacgt
//
LOCUS       DASPKR010000619         3114 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1519051, whole genome shotgun sequence.
ACCESSION   DASPKR010000619 DASPKR010000000
VERSION     DASPKR010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3114)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3114
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1519051"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..332)
                     /locus_tag="VD968_16610"
     CDS             complement(<1..332)
                     /locus_tag="VD968_16610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16063.1"
                     /translation="MSRQPLQRQSRRSFLRRTFAGLTAFSAYHLLGCSARGGGPVAQL
                     QHSGSAAEPEKLSYSAVLTQEGEPGEPLVVSGRIFAPDGKTPVEGVTLYVYHTDARGL
                     YSEDDGNGG"
     gene            complement(360..1508)
                     /locus_tag="VD968_16615"
     CDS             complement(360..1508)
                     /locus_tag="VD968_16615"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HYE16064.1"
                     /translation="MFGSHEKKNLSAYAHGELSPRESERVSRHLATCEKCRAEFEEIK
                     LGVRFAECLPVATAPAPLWDGIESALDAAARRDKSAARPPRPAGRLLGWRPLYVAATS
                     AFAVVALAAVWVYDGSTRPAWEVARLEGAPRIDSGRIGDKGRLGVGDWLETDSASRAQ
                     IEVANIGEVDVEPNTRVRLVTTRLTEHRLELARGTLHARIWAPPRLFFVNTPSAVAAD
                     LGCAYTLEVDDDGRSLLHVTSGWVALETEGAHDSLVPAGAACVTKPGKGPGTPFFEDA
                     PAELVRALREFDFGGGGSAALDAVLANSRPRDTLTLWHLLPRTAAAERERVFERLASL
                     SPPPGGVTREGALALDPFMLDAWKVALTDEWMTESMPKVKRAWRNIWK"
     gene            complement(1508..2128)
                     /locus_tag="VD968_16620"
     CDS             complement(1508..2128)
                     /locus_tag="VD968_16620"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE16065.1"
                     /translation="MILADERTGRWAVMGDATTGEAVIEACKRGDREAFRLLFECHRD
                     RVYTVALYFFGGDEATASDVTQQVFLKLFSRVGQFKGESEFTTWLYRLATNACIDEQR
                     KRRRFLPFGDATELAGMRARGSAEGAAERTEVADSVKRAVAALKPKLRVVVLLKYFEE
                     LSYEEMAAALGCSKGTVASRLNRGHKILARRLGHLRGALGGAGQGS"
     gene            2332..>3114
                     /locus_tag="VD968_16625"
     CDS             2332..>3114
                     /locus_tag="VD968_16625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16066.1"
                     /translation="MTLSLSARAQQRPLITEDVDVLPPGTMRIEAGVDFMQDAKFPAS
                     GLTGDLTRVGVLGIHFGLSTNVEFSIEGVAQNFLSINTATPNPAIPRDFAPGANSTND
                     TGDFRLSTKIKLRNETRRAPSLGFQFGVELPNSNEARGIGVNQTNAYGLILAGKRFGR
                     DGRLNTFGNLGIGILSAPTQRFTQNDVLLYGLAGILRVNRKVNLAAEVQGRANTRSGD
                     APLGTEPLSEFRLGLQVKAAGLRFDAAGIKGLTDFSPRSGVTF"
BASE COUNT          509 a         1129 c          991 g          485 t
ORIGIN      
        1 ccgccgttgc catcatcttc ggaatagagg ccgcgcgcgt ccgtgtgata gacgtagagg
       61 gtgacgccct cgacgggagt cttgccgtcc ggcgcgaaga ttctgccaga gacgacgagc
      121 ggctcgcccg gctcgccttc ctgcgttagc acggcgctgt aggagagctt ctcgggttcg
      181 gccgccgagc ccgaatgctg aagctgcgcc accggcccgc cgccgcgggc gctgcaaccc
      241 agcaggtggt aggccgagaa ggcggtcagg ccggcgaacg tcctgcgtag aaagctacgg
      301 cggctctgac gttgaagagg ctgtcttgac atcggcttct ctccttaata atccgagcgc
      361 tacttccaga tgttccgcca ggccctcttg actttgggca tgctctccgt catccactcg
      421 tccgtgagcg ccaccttcca ggcgtcgagc atgaaggggt cgagcgcgag cgccccctcg
      481 cgcgtgacgc cgccgggcgg cggcgagagc gacgccagcc gctcgaagac gcgctcgcgc
      541 tcggccgcgg ccgtgcgcgg gagcaggtgc cagagcgtga gcgtgtcgcg cgggcgtgag
      601 ttggcgagca cggcgtcgag cgccgcggag cccccgccgc cgaagtcgaa ctccctgagc
      661 gcgcgcacga gctccgcggg cgcgtcctcg aagaagggcg tgcccggccc cttgcccggc
      721 ttcgtcacgc acgcggcgcc ggccggcacg agcgagtcgt gcgcgccttc cgtttcgagc
      781 gcgacccagc cggacgtgac gtgcaggagg ctgcggccgt cgtcgtcaac ttcgagcgtg
      841 taggcgcagc cgaggtctgc ggcgacggcg gagggcgtgt tgacgaagaa gaggcgcggc
      901 ggcgcccaga tgcgcgcgtg cagagtgccg cgcgcgagct cgagccggtg ctccgtcagc
      961 cgcgtggtga cgaggcggac gcgagtgttc ggctccacgt ccacctcgcc gatgttcgcg
     1021 acctcaatct gcgcgcgaga ggcggagtcg gtctccagcc agtcgccgac gccgagccgc
     1081 cccttatcgc cgatgcggcc agagtcgatc cgcggcgcgc cttctaggcg tgccacctcc
     1141 cacgccggcc gcgtcgagcc gtcataaacc cagaccgcgg cgagcgcgac cacggcgaac
     1201 gcagaagtcg ccgcaacgta gagcggccgc cagccgagga gccgccccgc cgggcgaggc
     1261 gggcgcgcgg cgctcttatc ccttcgcgcg gccgcgtcga gcgcagactc aatgccgtcc
     1321 cagagcgggg caggagccgt cgcaacaggc aggcactcgg cgaaccttac cccgagcttt
     1381 atctcctcga actccgcgcg gcacttctca caggtggcga ggtggcgcga gacgcgctcc
     1441 gactcccgcg gcgaaagctc gccgtgcgcg taagccgaga gattcttctt ttcgtgactg
     1501 ccgaacatca acttccttgc cccgcgccgc cgagcgcgcc gcgcaggtgg ccgagcctgc
     1561 gcgccaaaat cttgtgaccg cggttcaggc gcgacgccac cgtcccctta gagcacccta
     1621 gcgccgcagc catctcctcg tatgaaagct cctcgaaata cttgagcagc acgacgaccc
     1681 gaagcttcgg cttcaacgcc gcgacggcgc gcttgacaga gtcggccact tcagtccgct
     1741 cagcagcgcc ttccgccgaa ccgcgcgccc tcatcccggc cagctccgtc gcgtcgccga
     1801 acggaaggaa gcgcctgcgc tttcgctgct cgtcaatgca cgcgttcgtc gccagcctgt
     1861 agagccaggt cgtgaactcc gactcgccct tgaactgccc gacgcgcgag aagagtttta
     1921 gaaagacctg ctgcgtcacg tcgctcgcgg tcgcctcgtc gccgccgaag aagtagagcg
     1981 cgaccgtata gacccgatcc ctgtggcact cgaagagtag gcggaaggct tcgcggtcgc
     2041 cccgcttgca ggcctcgatg acggcctcgc ccgtcgtagc gtcgcccatc acggcccagc
     2101 gccccgtcct ctcgtcagcc agtatcacga accctttgac gaacggctga aaaaatttct
     2161 tccattattt atgaagcgcg cgggcgcgcg ggtaaattat ttgtaaaagt tgacgcctcc
     2221 cgggggtgac attacaattc gcgtggctct catcaggaac ccgaagccga gggatcaatg
     2281 caacaccgcc gcacgacttt agcccgcgcc ctcttagcgc tcgccttcgc gttgacgctt
     2341 tcgctgtcgg cgcgcgcgca gcagcgcccg ctcataacgg aagacgtgga cgtgctgccg
     2401 cccggcacga tgcgcatcga agccggcgtt gacttcatgc aggacgccaa gttcccggcc
     2461 tctggcctga cgggcgacct cacccgcgtc ggcgtcctcg gcatacactt cggcctctcg
     2521 accaacgtcg agttctccat cgagggcgtc gcgcagaact tccttagcat caacacggcc
     2581 acgccgaacc cggccatccc gcgcgacttc gcgcccggcg cgaactccac gaacgacacg
     2641 ggcgacttcc gcctctctac gaagattaag ctgcgcaacg agacgcgccg cgccccgtcg
     2701 ctcggcttcc agttcggagt ggagcttccg aactcgaacg aggcgcgcgg catcggcgtc
     2761 aatcagacga acgcctacgg cctcatcctc gccggcaagc ggttcgggcg cgacggccgt
     2821 ctcaacacct tcggcaacct cggcataggc atcctctccg cccccacgca gcgcttcacg
     2881 cagaacgacg tgctgctcta cggcctcgcg ggcatcctgc gcgtcaaccg gaaggtgaac
     2941 ctcgcggccg aagtgcaggg gcgcgccaac acccgctcgg gcgacgcgcc gctcggcacc
     3001 gagccgctct ccgagttccg cctcggcctt caggtcaagg ccgcgggcct tcgcttcgac
     3061 gccgccggca tcaagggcct cacggacttc agcccgcgct cgggcgtcac cttc
//
LOCUS       DASPKR010000620         3565 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1395302, whole genome shotgun sequence.
ACCESSION   DASPKR010000620 DASPKR010000000
VERSION     DASPKR010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3565)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3565
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1395302"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..705
                     /locus_tag="VD968_16630"
     CDS             <1..705
                     /locus_tag="VD968_16630"
                     /inference="COORDINATES: protein motif:HMM:NF016024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rad52/Rad22 family DNA repair protein"
                     /protein_id="HYE16067.1"
                     /translation="AEEQDFITAEEYEEQTGASAQVVPLSFANTLRTLKQPVDPRLIK
                     TREGWTDRQGNKHMVEYVEWHAVADILDRVAPTWSHSVRGIVQIGDMVAVTAAITIEG
                     VTREGVGTGNADNETGIKKAEHDALKRAAIKFGIARELYQRESEVIEREGAGPQPGDF
                     PRDPLAKSMADLVTPKQLGMIRALAREAGVDPDEESQQVMRVRTEELSKRAASSFIDH
                     LKRLQQEQTFEVRRAS"
     gene            780..1307
                     /locus_tag="VD968_16635"
     CDS             780..1307
                     /locus_tag="VD968_16635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16068.1"
                     /translation="MTTEEMVEEARPLTIELDYAEEAERQPDLFGAETGAATEEAHEQ
                     RTKKEQILSLYEGGTTDIAEIVRAVKARPSYVAQVLQTAGHLDGYFDLYTTTGREQNV
                     YTRYFRNVLAFRNPEAARESVKRIDRLYNYFERMGDRAGQHQAMVLALTGKNRARWSG
                     KLEESQIFSEWLAQH"
     gene            1603..2016
                     /locus_tag="VD968_16640"
     CDS             1603..2016
                     /locus_tag="VD968_16640"
                     /inference="COORDINATES: protein motif:HMM:NF037170.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYE16069.1"
                     /translation="MQHDMPANGAFCWNELATKDAAAAKKFYAELLGWRFKESTATAD
                     CASSMPYSEIHVGDSECGVGGLYQMTSEFGDAPSHWMAYVAVDDVDAKADRVKQLGGS
                     VCVPPTDIPNVGRFCVINDPTGATISLIKLTGAGS"
     gene            2067..2504
                     /locus_tag="VD968_16645"
     CDS             2067..2504
                     /locus_tag="VD968_16645"
                     /inference="COORDINATES: protein motif:HMM:NF020157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1761 domain-containing protein"
                     /protein_id="HYE16070.1"
                     /translation="MRINYLAVAVAALAYWALGAVWYGAFERPFVALMRWTPEQVAAM
                     QAQGAGPEIGAALVTSLVLAFVLAHFLKFTGAETAAKGAQTGLWLFVGFVATTNLETV
                     LFESRPLGLYLINNGYHLVGLLGMGALLAVWRRRESRSLAYQS"
     gene            2696..3358
                     /locus_tag="VD968_16650"
     CDS             2696..3358
                     /locus_tag="VD968_16650"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HYE16071.1"
                     /translation="MPAKNEDLHGNVPDKAALALLLIDVINDLEFETGEELLRHAEPM
                     ARRLAELKRRAKAAGVPVIYVNDNFGKWQSDFNKILKHCLEDDVRGRPLAEVLRPDED
                     DYFVLKPKHSGFFSTTLDILLDYLGVKTLILTGLTGDICVLFTAHDAYMRDFNLVIPS
                     DCVASNDPGENQYTLEKMERLMGADIRPSAEIDFEELKRRSAREPAPNPEPQPQKFAE
                     ER"
BASE COUNT          678 a         1243 c         1104 g          540 t
ORIGIN      
        1 gccgaggagc aggacttcat cacggccgag gagtacgagg agcagacggg cgcgagcgcg
       61 caggtcgtgc cgctctcctt cgccaacacc ctgcgcacgc tcaagcagcc cgttgacccg
      121 cgcctcatca agacgcgcga gggctggacc gaccgccagg gcaacaagca catggtcgag
      181 tacgtcgagt ggcacgccgt cgccgacatc ctcgaccgcg tcgccccgac ctggtcgcac
      241 tcggttcgcg gcatcgtcca gataggcgac atggtcgccg tcacggccgc catcaccatc
      301 gagggcgtca cgcgcgaggg cgtaggcact ggtaacgccg acaacgagac gggcatcaag
      361 aaggccgagc acgacgcctt gaagcgcgcc gccattaagt tcggcatcgc ccgcgagctc
      421 taccagcgcg agtcggaagt catcgagcgc gagggcgcag gcccgcagcc cggcgacttc
      481 ccgcgcgacc cgctcgccaa atcaatggcc gacctcgtca cgccgaagca gctcggcatg
      541 atccgcgccc tagcgcgcga ggccggcgtt gacccggacg aggagagcca gcaggtgatg
      601 cgcgtccgca ccgaggagct ctcgaagcgc gcggcttcca gcttcattga ccacctcaag
      661 cggctccagc aggagcagac cttcgaggtg cgccgcgcta gctaaggaag cgacagccgg
      721 ggccgcccgt cttcacggga gggcggccgc cggcgactct ctcaaggggg ttcaggaaga
      781 tgacgaccga agagatggtt gaagaggcga ggccgctgac gattgagctc gactacgccg
      841 aggaggccga gcgccagccc gacctgttcg gcgccgagac gggcgcggcc acggaagagg
      901 cccacgagca gcggacgaag aaggagcaga ttctctcgct ctacgagggc gggactaccg
      961 acatcgccga gatcgtgcgc gccgtcaagg cgcggccctc ctacgtcgct caggtcttgc
     1021 agacggccgg ccacctcgac ggctacttcg acctgtacac gaccacgggg agggagcaga
     1081 acgtctatac gcgctacttc cgcaacgtgc tcgccttccg caacccggag gccgcgcgcg
     1141 agagcgtgaa gcgcattgac aggctctaca actacttcga gcgcatgggc gaccgcgccg
     1201 gccagcacca ggcaatggtc ttggccctga cgggcaagaa ccgcgcgcgc tggtcgggca
     1261 agctcgaaga gtcgcagatt ttcagtgagt ggctcgcaca gcactaaggg ccgagcaagt
     1321 ttaagaagga acgcaaaccg cctcccccgc gcggggaggg ctagaacgag caaggggcgg
     1381 gtttgaaagg tgagtcttca accgatgttg cggctcacct ttcatattta gccatcggct
     1441 tttaagtttc ggtcagattt ccctcgcaag catcacctcg cactgacgcc ggccgcgcgc
     1501 cggctccacc tcgcaggttt ttctttctcc gtagttttaa agtcgggcgg agccctgccc
     1561 gaaagcttta gctaaaacca tctaacgtaa ggagaggaag agatgcaaca cgacatgccc
     1621 gctaacgggg ccttctgctg gaacgagctg gcgacgaagg acgccgcggc cgcgaagaag
     1681 ttctacgcgg agcttttggg ctggcgcttc aaggagtcaa cggcgacggc cgactgcgcc
     1741 agcagcatgc cctacagcga gattcacgtc ggcgacagcg agtgcggcgt cggcggcctc
     1801 taccagatga cctcggagtt cggcgacgcg ccctcgcact ggatggccta cgtcgccgtg
     1861 gacgacgttg acgcgaaagc cgaccgcgtg aagcagctcg gcggctcggt ctgcgtcccg
     1921 cccacagaca tccccaacgt cggccgcttc tgcgtcataa acgacccgac gggtgccacc
     1981 atctcgctca tcaagctcac gggcgccggc tcgtgaaagc cccgccccct cgcccgaccg
     2041 acttccatgt aggaggaacc gacgttatga gaatcaacta ccttgcggtc gccgtcgcgg
     2101 cgctcgccta ctgggctctg ggcgcggtct ggtacggcgc cttcgagagg ccgttcgtcg
     2161 cgctgatgcg ctggacgccc gagcaggtcg cggctatgca ggcgcagggc gcgggcccgg
     2221 agataggcgc ggcgctcgtg acatcgctcg tcctggcctt cgtgctcgcg cacttcctaa
     2281 agttcacggg cgccgagacg gccgcgaagg gcgcgcagac gggcctctgg ctcttcgtcg
     2341 gcttcgtcgc cacgaccaac ctcgagaccg tcctcttcga gtcccgcccc ctcggcctct
     2401 acctcatcaa caacggctac cacctcgtcg gcctgctcgg catgggcgcc ctgctcgccg
     2461 tatggcggcg cagggagtca cgctcgctcg cctaccagtc ctgagcttcg cgcccccgcc
     2521 cgaccaccca cggcgcgaaa cgcaagcggg gtctccagcg cgggagcctc accctccccg
     2581 cccccgcgcc cgccacaaaa aagtcacttg ccatcgctcc cccggcgcac gcataatccg
     2641 cgcatcccct gaagttccgc cctagcaccg agccacggag gggtttgcct agcccatgcc
     2701 cgcgaagaac gaagacctgc acggcaacgt gccggacaag gccgcgctcg cgctccttct
     2761 gattgacgtt atcaacgacc tcgagttcga gaccggcgaa gagctgctgc gccacgcaga
     2821 gccgatggcg cgccgcctgg ccgagcttaa gaggcgcgcg aaggcggccg gcgtccccgt
     2881 catctacgtc aacgacaact tcggcaagtg gcagtccgac ttcaacaaga ttctcaagca
     2941 ctgcctcgaa gacgacgtgc gcggccgtcc cctcgccgag gtgctcaggc ccgacgagga
     3001 cgactatttc gtcctcaagc ccaagcactc gggcttcttc tccaccacgc tcgacatact
     3061 gctcgattac ctcggcgtaa agacgctcat actgacgggc ttgaccggcg acatctgcgt
     3121 cctcttcacc gcgcacgacg cgtacatgcg cgacttcaac ctcgtcatcc cctcggactg
     3181 cgtcgcctcg aatgaccccg gcgagaacca gtacaccttg gagaagatgg agcgcctgat
     3241 gggcgcagac atacgcccct cggccgagat tgacttcgag gagctgaagc gccgctccgc
     3301 gcgcgagccc gcgcccaacc ccgagccgca gccacagaag ttcgccgaag agcgctgacg
     3361 cccgagcgct cccgttaacg aaagactcac ggagaccctt ttaatgcgac gattcctgcg
     3421 tgataacggc ctgagcatcg cgatgctggc cctcttcttc ttctcgctcg cgggccaggc
     3481 cgtgacgggg atgcatgagt acaacgagga tcagcgcgag cacggccagg cgccggcctc
     3541 cggcctggcc gagtacctcg taacc
//
LOCUS       DASPKR010000621         2627 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1645333, whole genome shotgun sequence.
ACCESSION   DASPKR010000621 DASPKR010000000
VERSION     DASPKR010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2627)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2627
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1645333"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..650
                     /locus_tag="VD968_16655"
     CDS             <1..650
                     /locus_tag="VD968_16655"
                     /inference="COORDINATES: protein motif:HMM:NF013106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="biosynthetic peptidoglycan transglycosylase"
                     /protein_id="HYE16072.1"
                     /translation="FIELRLDEARREGREPRRVQQWVPLERISPDLQRAVLAGEDANF
                     ATHDGFDYEAIQRAWDEAMRATEKEAKEEGEEDPSSWIPDMKHFKRGGSTISQQLAKN
                     LYLSSERSFARKAREALYTYFLERSLSKCRILEIYLNVIEWGDGIYGAEAAARTYFNK
                     SAADLNQREAAYLSAMIPSPLNVFNPQKNPRRVARRQRVILRGMNYVRPPACAGG"
     gene            complement(718..1083)
                     /locus_tag="VD968_16660"
     CDS             complement(718..1083)
                     /locus_tag="VD968_16660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HYE16073.1"
                     /translation="MFREALTRIVERTEGATGALIMGMDGIAVERVLLPEASESNMDV
                     AAAELTSLVRNALRAGVNTGHGRLRELVVNYDSACVLARMFSEEYYAVLTLTPEGNLG
                     RGRYELRKAELDLAREFSL"
     gene            complement(1089..>2627)
                     /gene="pilQ"
                     /locus_tag="VD968_16665"
     CDS             complement(1089..>2627)
                     /gene="pilQ"
                     /locus_tag="VD968_16665"
                     /inference="COORDINATES: protein motif:HMM:TIGR02515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HYE16074.1"
                     /translation="EQYGVNFVVDASVERVPVTINVTEVPWNFALNSILKANRLGIEV
                     NGNILRVATLKVLKEEASLRAEEEKARAELRAAQLENTPLVTEFIRLNYARASGTLAG
                     AHGSAGGFAGGSTGINFHVGGDASGGGGEKGILPIIARRLSRRGGVEVDGRSNTLIVT
                     DVKENVDAIRRLVQLLDQPEPQVEIETRIVIASRNFSRDLGVQLSFLALNNDGGALSF
                     ATARATRPPTGIPEGTIGFRPGGNPQTVQDPAGNGLGANAPTTVIGLTTGIFGSAQLS
                     ALITAAESKGQAKIVATPRVTALNNRPAQVESGTQIPVVTPQSGGAGSTIFTTTFVSV
                     PLRLSITPQITDAGTVILRVVMENNSVNLTLTNSLGTPGIDTQRIQTEVLVPDGGTTV
                     VGGVLNDRESENQNRTPGLGSLPVIGNLFKRKAVLRNTDEILFFITPRIYRPDYQGRR
                     TDAAPVTGTRSVQIPQPVPLGNPGTNTPVPDPQGQSQPTSAPTQQQPLPVVETQPPAS
                     PVKE"
BASE COUNT          394 a          840 c          937 g          456 t
ORIGIN      
        1 gcttcatcga gttgcgcctg gacgaggccc ggcgcgaggg gcgcgagccg cggcgcgtcc
       61 agcagtgggt gccgctcgaa cgcatctcgc cggatctgca gcgcgccgtc ctcgccggcg
      121 aggacgccaa cttcgccacg cacgacggct tcgactacga ggccatacag cgcgcgtggg
      181 acgaggccat gagggccacc gagaaggagg cgaaggagga gggtgaggaa gacccttcga
      241 gctggattcc cgacatgaag cacttcaagc ggggcggctc gaccatctcg cagcagctcg
      301 caaagaacct ctacctctcg tccgagcgct ccttcgcccg caaggcccgc gaggctctct
      361 acacgtactt cctcgagcgc tcgctctcga agtgccgaat acttgagatc tacctgaacg
      421 tcatcgagtg gggcgacggc atctacggcg ccgaggccgc cgcccgaacc tacttcaaca
      481 agtcggccgc cgacctcaac cagcgcgagg ccgcctactt gtccgcgatg atcccgagcc
      541 ccttaaacgt cttcaacccg cagaagaacc cgcgccgcgt cgcgcgccgc cagcgcgtca
      601 tactgcgcgg catgaactac gtccgccccc ctgcctgcgc gggcgggtga ataaaaatcg
      661 gggccgcgtt gctgcggccc cgtcgaatgc ccacatcatg gaagagtgat cgggcggtca
      721 gagcgagaac tctcgcgcga ggtctagctc ggccttgcgc agctcgtagc ggccgcggcc
      781 gaggttgcct tccggcgtaa gggtcagcac ggcgtagtat tcctcggaga acatgcgcgc
      841 gaggacgcac gcgctgtcgt agttgaccac cagctcgcgc aggcggccgt ggcccgtgtt
      901 cactccagcg cgcagggcgt tgcggacgag cgaggtcagc tcggccgccg caacgtccat
      961 gttcgactcg ctggcttcgg ggagcagcac gcgctcgacg gctatgccgt ccatccccat
     1021 tatcagggcg cccgtcgcgc cttcggtgcg ttcgactatg cgggtcagtg cttccctgaa
     1081 catccgtgtt actccttgac gggtgaggcg ggcggctgcg tttcgacgac gggcagcggc
     1141 tgctgctgcg tcggcgccga ggtgggctgg ctctgcccct gcgggtcggg gacgggcgtg
     1201 ttcgtgccgg ggttgccgag cggcactggc tgcggtatct gcacggagcg cgtgcccgtg
     1261 acgggcgcgg cgtcggtgcg gcggccctgg tagtcggggc ggtatatgcg gggcgtgatg
     1321 aagaagagaa tctcgtcggt gttgcgcagg acggccttgc gcttgaagag gttcccgatg
     1381 acggggagcg accccagccc cggcgtgcgg ttctggttct cgctctcgcg gtcgttgagg
     1441 acgccgccca cgaccgtcgt gccgccgtcg gggactagca cctcggtctg tatgcgctgc
     1501 gtgtctatgc ccggcgtgcc gagcgagttc gtgagcgtaa ggttgacgct gttgttctcc
     1561 atcacgacgc ggaggatgac cgtgccggcg tccgttatct gcggggttat ggagagccgc
     1621 agcgggacgg agacgaaggt tgtcgtgaat atcgtagagc cggcgccgcc cgactgcggg
     1681 gtgacgacgg gaatctgcgt gcccgactcg acctgcgccg ggcggttgtt aagcgccgtg
     1741 acgcgcgggg tcgctactat ctttgcctgc ccctttgact cggccgcggt gatgagcgcg
     1801 ctgagctggg cggagccgaa tatgccggtc gtaagaccta tgacggtcgt aggggcgttg
     1861 gcgccgaggc cgttgcctgc cgggtcttga acggtctgcg ggttgccgcc ggggcggaag
     1921 ccgatggtgc cttcggggat gcccgtgggc gggcgcgtgg cgcgtgcggt cgcgaagctc
     1981 agcgccccgc cgtcgttatt gagggcgagg aagctgagct gcacgccgag gtcgcgcgag
     2041 aagttgcggc tggcgatgac gatgcgcgtc tctatctcga cctgcggctc gggctggtct
     2101 aatagctgca cgaggcggcg tatggcgtca acgttctcct taacgtccgt gacgatgagc
     2161 gtgttgctgc gcccgtcaac ctcgacgccg ccgcggcgcg acagcctgcg ggcgatgatg
     2221 gggaggatgc ccttctcgcc gccgccgccc gaggcgtcgc cgccgacatg gaagttgatc
     2281 cccgtagagc cgcccgcgaa gccgccggcc gagccgtgcg cgcccgcgag cgtacccgag
     2341 gcgcgcgcgt agttgaggcg tatgaactcc gtgacgagcg gggtgttctc gagctgggcg
     2401 gcgcgcagct cggcgcgggc cttctcctcc tcggcccgaa gcgacgcctc ttccttcaag
     2461 accttgagcg tggcgacgcg aaggatattg ccgttgacct cgatgccgag gcggttggcc
     2521 ttgagtatcg agttgagggc gaagttccac ggcacctccg tcacgttaat cgtgacgggc
     2581 acgcgctcga ccgaggcgtc aacgacgaag ttcacgccgt actgctc
//
LOCUS       DASPKR010000622         2319 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_616047, whole genome shotgun sequence.
ACCESSION   DASPKR010000622 DASPKR010000000
VERSION     DASPKR010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2319)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2319
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_616047"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..245
                     /locus_tag="VD968_16670"
     CDS             <1..245
                     /locus_tag="VD968_16670"
                     /inference="COORDINATES: protein motif:HMM:NF013586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016805 - dipeptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HYE16075.1"
                     /translation="DEMTERSHADYAEGDPEPRRLRDLLRAAMEAEGFTVYAPEWWHY
                     DYQDWRQYPVLDLSFSEISPARKAVRRAPRQRPHTK"
     gene            455..>2319
                     /locus_tag="VD968_16675"
     CDS             455..>2319
                     /locus_tag="VD968_16675"
                     /inference="COORDINATES: protein motif:HMM:NF042645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6600 domain-containing protein"
                     /protein_id="HYE16076.1"
                     /translation="MRSRHSLPSALLFLLSTFLVFTTAARADEDTYEAEYEETARVAR
                     VSLTKGEASLRRAGEIEWERARINVPLVEGDTLATGRDSRMEIQIDARNFVRVGELSV
                     VKVVTLRDEGVALSVTEGTATLRLARFDPDREYFEIDAPKTTIAAEKTGLYRLDVSGD
                     GGVRVTVRDDGRARIYSETSGFVLRNNRSARLVRDGAEEGDWELSAAAELDEWDFWID
                     ERERHLASLLRLEGRERYYDQEVWGAEELDAYGDWEYTRDYGYIWRPRVTVVNNYYDW
                     APYRYGHWRWCSPYGWTWIPDEDWGWAPYHYGRWVYYNSRWCWAPRGYGYHYGRARWR
                     PALVVFVNLNFGRDRYVSWYPLTHGQRDPRGRWWRHDRDGRHHSRRLPGTAFARAVTR
                     IRESEFGSASARPRRAEGDIAQRTFASEPVRGRLPITPADTGAARAARPGISDPKVAR
                     NNTQSGAGRREGLFINRPDSVNPPRSVPDRTTGAALRAPGVALDKELRRTRVFGNREP
                     RSVPKAAAVGNSGGSSAIGDSGTGAVERPKRISSRPSLEGPGGSSEGAAPSSPSVRQR
                     PAPSPDGRGGAPDGDAAPRVRRAPRGYDGDANNASPAPRMSPARPPDAQPGGDST"
BASE COUNT          363 a          844 c          783 g          329 t
ORIGIN      
        1 acgacgagat gacggagcgc tcgcacgccg actacgccga aggcgacccg gagccgcgcc
       61 gcctccgcga cctgctgcgc gcggcgatgg aggccgaggg cttcacggtc tatgcgcccg
      121 agtggtggca ctacgattac caggattggc gacagtaccc cgtcctcgat ttgagcttct
      181 cggagatcag ccccgcgcga aaggcggtgc gcagggcgcc acggcagcgc cctcatacca
      241 aatagtgctt tgcctgcacc atctcgcata ggcgcggggc gcgccggctc ggcttttctt
      301 cgcccacgcg ttacaggcac gcgccttgct cgccccggtt ttaaaggaga gagccctcgc
      361 aagtgctttc ctccccggaa gcctagcttt cgtccccgag agcagactgc ccccgaagca
      421 gccagttcgt ttcacaaccg aaggagcgtc agttatgcgt tctcgtcact ctctgccctc
      481 agcgctgctt tttctcctgt caacttttct cgtcttcacg acggccgcgc gcgccgacga
      541 agacacttac gaggccgagt acgaagagac ggcccgcgtc gcgcgcgtaa gcctcactaa
      601 gggcgaggcg agcctgcgcc gcgcgggcga gatcgagtgg gagcgcgccc gcataaacgt
      661 cccgctcgtc gagggcgaca cgctcgcaac gggccgcgac tcgcgcatgg agattcagat
      721 tgacgcgcgc aacttcgtcc gcgtcggcga gctctccgtc gtcaaggtcg tcaccctgcg
      781 cgacgagggc gtcgcactga gcgtcacgga aggcaccgcg acgctccgcc tcgcgcgctt
      841 tgaccccgac cgagagtatt tcgagataga cgcgcccaag accaccatcg ccgccgagaa
      901 gacgggcctc taccgcctcg acgtgagcgg cgacggcggc gtccgcgtca cagtccgcga
      961 cgacggccgc gcccgcatct actccgagac ttccggcttc gtgctgcgca acaaccgctc
     1021 tgcccggctc gtgcgcgacg gcgcggagga gggcgactgg gagttgagcg ccgccgccga
     1081 gttggacgag tgggacttct ggattgacga gcgcgagcgc cacctcgcct ctctcctccg
     1141 cctcgaaggt cgcgagcgct actacgacca ggaggtctgg ggcgccgagg aattagacgc
     1201 ttacggcgac tgggagtaca cgcgcgacta cggctacata tggcggccgc gcgtcaccgt
     1261 cgtcaacaac tattacgact gggcgcccta ccgctacggc cactggcgct ggtgctcgcc
     1321 ctacggctgg acttggatac cggacgagga ctggggctgg gcgccctacc actacggccg
     1381 gtgggtctat tacaacagcc gctggtgctg ggcgccgcgc ggctacgggt accactacgg
     1441 ccgcgcgcgc tggcggcccg cgctggtcgt cttcgtcaac ctcaacttcg ggcgcgaccg
     1501 atacgttagt tggtatccgc ttacgcacgg gcagcgcgac ccgcgcggcc gttggtggag
     1561 gcacgaccgc gacggccggc accactcgcg ccgactgccc ggcacggctt tcgcgcgggc
     1621 cgtcacgcgc atacgcgaga gcgagttcgg ctcggcgagc gcgcggccgc gccgcgccga
     1681 gggcgacatc gcgcaacgca cgttcgcgtc cgagccggtg cgcgggcgct tgccgataac
     1741 gcccgccgac acgggcgcgg cgcgggcagc gaggccgggc atcagcgacc cgaaggtcgc
     1801 acgcaacaac actcagtcgg gcgcgggcag gcgcgaaggg ctgttcataa accgccccga
     1861 ctccgtgaac ccgccgcgct ccgtgcccga ccgcaccacg ggcgcggccc tccgcgcgcc
     1921 cggcgtcgcg ctcgacaagg agttgaggcg cacgcgcgtc ttcggcaacc gcgagccgcg
     1981 ctctgtgccg aaggccgcgg ccgtcggcaa ctccggcggc tcgtctgcca tcggcgactc
     2041 ggggactggc gccgtcgagc ggcctaaacg gattagcagc cgtccgtcat tagaagggcc
     2101 gggcggctcg tccgaggggg cggcgccttc gtcaccctcc gtgcgacaga ggcccgcgcc
     2161 ctcgcccgat ggccgtgggg gcgcgccgga cggcgacgcg gccccgcgcg tgaggcgcgc
     2221 gccccgcggc tacgacggcg acgctaacaa cgcgagccct gccccgcgca tgagcccggc
     2281 tcgccccccc gacgcgcagc ccggcggcga cagcacgag
//
LOCUS       DASPKR010000623        11500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_878665, whole genome shotgun sequence.
ACCESSION   DASPKR010000623 DASPKR010000000
VERSION     DASPKR010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11500)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11500
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_878665"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1088)
                     /locus_tag="VD968_16680"
     CDS             complement(<1..1088)
                     /locus_tag="VD968_16680"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE16077.1"
                     /translation="MTKKKIKVLFFVAEFFRLQGSQRSLLALLRELPAEGIEPVVVFP
                     GEGRCTEAYRRAGLDVRVLEAPEELGAKNKVLLRLSAFGAARVFLTRVVGYNLRLARL
                     ARELRVDAFHFNTPRAMLLGGLSSLIARRPRVLHVRGQLHVLGRAHRFVSQLFASRMI
                     LVSESLLSHVYPVFRRRCTTVHTGIDERDVPGLTDGAPASLPVEVGGRAVVCAFGAVC
                     PFKGYHHLVEAARLVVERNGTRPPVFLAVGELVDEPYYEYLRGLVEEYGLTNFHFVGW
                     QERAVDFYRAADVVVLPSVEGERLRAGGLDVEVKGNEGLPRAVLEAMYMGKAVVATRV
                     AGTAEQIVDGESGVLVPPGDAPSMAEAIL"
     gene            complement(1085..1768)
                     /locus_tag="VD968_16685"
     CDS             complement(1085..1768)
                     /locus_tag="VD968_16685"
                     /inference="COORDINATES: protein motif:HMM:NF020463.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WbqC family protein"
                     /protein_id="HYE16078.1"
                     /translation="MLVAIHQPEFLPWAGLFEKMSRADLFVVLDDVQFSKNDYQNRTR
                     VKGQAGAQWLTVPVAHKAGQPINEVEVSGDAWRAKHWKTLVSCYARAPHFREYAPAFE
                     ELYSRPWARLAELNVAALDLAARALGIEKKWAFSSGLKAGGRKSGLVLNICERVGATR
                     YYSGRTGSTYLDRDEFARAGIEIVVQEFKHPTYEQLFMKEAGFVAGLSIVDMLFNCGP
                     SSRELLTRQ"
     gene            complement(1772..2929)
                     /locus_tag="VD968_16690"
     CDS             complement(1772..2929)
                     /locus_tag="VD968_16690"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HYE16079.1"
                     /translation="MTTRAAAAEKIAGARPLFHDEDVPEILERLEKVLRGGRLIFGGN
                     TRELEESFREYVGTRHAVSVNSCTTALQIAMRFYGVEGREVIVPTNTFASCVKAVMYE
                     GGRPVLAGMDGKTFCLDVDDAISRITPATAGIIVVHIAGLVCPEIDRLREECRSRGLF
                     LLEDPSHAHGAMIDDRKAGSLADAACFSFYPTKIMTTGTGGMITTDDERLAAFARSVR
                     HHGQSEAGGLESIVNLGNDWCMDELRAVLGIYQLKRLEENVEHRNQVVRWYRRELASE
                     GWLEMPEYPERFRHAYYKFPVLLAEGIDKAALRRLMAEDYQIEMGAVYDPPCHRHPVF
                     RERLGCYDGQFPEAERALARQICPPVHAAVTEEDVVRASAAMRDAVARLGG"
     gene            complement(2955..3890)
                     /locus_tag="VD968_16695"
     CDS             complement(2955..3890)
                     /locus_tag="VD968_16695"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYE16080.1"
                     /translation="MKIVIVGGGGFIGSALVARLSAAHECVCFGHGGRFEELRALARG
                     RVEFVEGDVTDGVRVREAVHGAGAVLHVAGTGGEADCLAAPARAVLTHVHGTHVLLRE
                     AMAAGVGRFMFASTIAVYGTYRARPQPLSEEHEPLPDDFYGALKFAAEREVFDSGRGQ
                     VFRLANVYGEAGGLEPASGSVADKFVGAVATGAPMRIFGEGSQLIDYVHVADVCRAIE
                     EALGSPPGPFVYNLGGGRPVSIRDLSAIVEETAAARFGAGACVEQVPAPAQKLWPDRW
                     LSIEKIGRETGWRPRVTLEEGLARMLARKLGREES"
     gene            complement(3954..4910)
                     /locus_tag="VD968_16700"
     CDS             complement(3954..4910)
                     /locus_tag="VD968_16700"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: protein motif:HMM:NF012760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0071951 - conversion of methionyl-tRNA to
                     N-formyl-methionyl-tRNA [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HYE16081.1"
                     /translation="MSEEQRGGGRLRVVLLCAGEIGYRAVGRVLESEASRLVGVFTYR
                     VEPPQEGYLELIKRLCGEHGVPVYESANAGREEFREVWARLRPDYIFTLKWRTMVPRW
                     VMEAARGGLVGFHASLLPMYRGFAPVNWPIINGEERTGLSMFYAAEGVDEGDIIEQRE
                     RALTDADDAGTLDAWVTETAVEMLAENLPRLADGTAPRRPQDHSQATYAVWRGPEDGR
                     IDWSRPTREVFNLVRGLTSPYPGAYSLVGGRKLTVWSAEVEPRPRRYVGRIPGKVEAI
                     IPGEGVNVLTGDGTLRLKLVQFEGEEPRNASEVITRLRTKLD"
     gene            complement(4913..5560)
                     /locus_tag="VD968_16705"
     CDS             complement(4913..5560)
                     /locus_tag="VD968_16705"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF017522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TylF/MycF/NovP-related O-methyltransferase"
                     /protein_id="HYE16082.1"
                     /translation="MIERDPRWETFTFALKFLGFEKVRGDIAEFGVFTGVSLALLAHA
                     YQTNVMAIKRRVVGFDSFKGLPPSEEKHERWREGWFSTNLWWHPLLPFGKPVTPEVTL
                     DLFRACELPEPSLEVGGFEETARASVPSKYSEIALLHIDCDLYESTRAVFEAVAPALQ
                     EGTVVLFDDWFHYKGDPRKGESKAFTEFLRDHPEWGAQHYRSYAIFGNAFILYRK"
     gene            complement(5589..6692)
                     /locus_tag="VD968_16710"
     CDS             complement(5589..6692)
                     /locus_tag="VD968_16710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16083.1"
                     /translation="MIQAEETRRAAPAGAAAPRPRIVEYAPEHFEALREAAASTPQSA
                     SLTHRPFVDYYYASAERCRLYLFLDAEGAVAGTLGVERVGFEHEGRPLALSFGSNFFA
                     FRKGAAGLLFMHWMKTYPAGVVFGGSPDTHHITRSQKWAYYGGVKTYLLNRAYQPHAG
                     DSPLRALAKWGARSLGRRVALGRLARRVPPEFAGRLSVREEASATGEMLPRRSPFSLR
                     MAEGADYLNWRYNTRLPFVRYRVFRVLDRNETSGYVIINESPSRLIVSQCDGEQAEAL
                     AHAVVLALAEASRGDRRPREVMLTSSHDAMRRAFEAYGFRAAPQERPFAVGSRRGGVE
                     LGEDTSGWLVNFDWTDNGLRPPFLDQGRGGRAG"
     gene            complement(6689..6934)
                     /locus_tag="VD968_16715"
     CDS             complement(6689..6934)
                     /locus_tag="VD968_16715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0000036 - acyl carrier activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HYE16084.1"
                     /translation="MGTETRLLNCFSAVFPDAGEDELRRAAMGATESWDSMASVTLVS
                     LVEEEFGVQVAPDDLEHFVSFRQVLGYVEGAAEKSAL"
     gene            complement(6946..8691)
                     /locus_tag="VD968_16720"
     CDS             complement(6946..8691)
                     /locus_tag="VD968_16720"
                     /inference="COORDINATES: protein motif:HMM:TIGR01686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIC family phosphatase"
                     /protein_id="HYE16085.1"
                     /translation="MKLVEALKLLRERPPEGAESFRAFLACGFTPLHLETFLGAHLRR
                     RRPGLAVGTATGLYGDLTGSLRRLTEEPGDLDAAAVVIEWPDLDPRLGIRGAGSWSPE
                     VLPDVLRTAAERAEWLAEAIVKASERVPLAVAVPTLPLPPASFEPGWQSGAFDLNLRR
                     AAADLAARVSRGRGVRVISQSRLDERSPLAARLDVKSELTTGFPYQLAHASDLAEALA
                     TALLPPPPKKGLITDLDDTLWRGLVGEVGAEGVSWGLDAHSQAHALYQMLLGSLARTG
                     VLVAVASKNEPEAAARALAREDLALSKDDLFPVEVGWGAKSEAVSRILRAWNVGADGV
                     VFVDDSPIELAEVKAAHPDIECVEFPRGDDEGAYRLLARLRDLFGKSALLEEDALRLQ
                     TVRRSAAAAEEVNGGGDSSHTERFLEQAEAELTLSFDAGASDARAFELVNKTNQFNLN
                     GVRYTEALWRRRLEEPGGFLMVTSYKDKYGPLGKIAVLAGRREGERLRVGTWVMSCRA
                     FARRIEHRCLAALFERFGAREIEFDFAETPKNAPLRAFLREFAEVDGGGRPRLTRETF
                     AEKCPPLYHKTFQTG"
     gene            complement(8688..9671)
                     /locus_tag="VD968_16725"
     CDS             complement(8688..9671)
                     /locus_tag="VD968_16725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16086.1"
                     /translation="MIPSFIITIDTEGDDGWSRRGETTTENARYLPRFQALCERHGLK
                     PTYLTNYEMATSAAFVELARDALARGAAEVGMHLHAWNSPPLVPLTADDYEHMPYLVE
                     YPDEVMREKVRVMTGTLEETFGVKMTSHRAGRWAFDSRYARLLVEFGYTVDCSVTPHV
                     SWRGVPGDPAGRGGTDYTRFPELPYRLDLEDVSREGDSTLLEVPMTIYLNPNRLRDSL
                     PSPLRRVARRALGPREAWLRPDGRNLARMLGVLRRARAERRPCAEFMLHSSELMPGGS
                     PYFPDARSVETLYEHLEELFAAASATFKGATLTEFRDEFCAAEPADEECAA"
     gene            complement(9764..>11500)
                     /gene="asnB"
                     /locus_tag="VD968_16730"
     CDS             complement(9764..>11500)
                     /gene="asnB"
                     /locus_tag="VD968_16730"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HYE16087.1"
                     /translation="LRITYNGEVYNFRELRRELEALGHRFRSDTDTEVVLNAYRQWGP
                     QSLSRLNGMFAFAVWDERDHSLFVARDRLGVKPLYYSTEGGGLRFASEIKSLLEDPSL
                     PRDIDWEAVDLYLTFRIIPHPFTIFRGVRKLAPGHYLVLKDGRLSEREYWDVFGERGR
                     GAAAATNGSALRNGNLGAAKRELFALTEDAVRRRLVSDVPVGVLLSGGIDSSIIASLA
                     ARLSPSRMKTFTLGFLDAKKGAGAYDESETARRTAAFLGTEHHELLLTTDAVRESIPG
                     VLDHFDEPFGSSSAVPMFHISRLARESVTVALSGDGPDETFAGYRAYLLEPLASVYMR
                     LPRALSRSVIEPAVFGLPSSDASTLARSVRRAQRFLRAVNAVPSERFFRLTNKFNDMA
                     PEDVYDPAFRTLSLELARRVFRRHYDAPALGADLINRMLYVDAKIKLADHVLTKVDMM
                     SMRVSLEVRTPFLDYRIAELAFRLPGNAKVNWLRKKFILRETFRQVLPPHVFRLPKRG
                     FEIPVGEWFKNELREMFLDTVAEPAGGGVFRKGAVERLYEEHRQGKRDHGEKLWILFV
                     LRWWARKNGVRI"
BASE COUNT         1821 a         3923 c         3968 g         1788 t
ORIGIN      
        1 agtatcgcct cggccatgct cggcgcgtcg ccggggggga cgagcacgcc ggactcgccg
       61 tcaacaatct gctcggccgt gccggcgact cgcgtggcga cgacggcctt gcccatgtac
      121 atcgcttcga gcacggcgcg cggcagcccc tcgttcccct tcacctcaac gtctaagccc
      181 cctgcgcgca gccgctcgcc ctcgaccgag gggagcacga ccacgtccgc ggccctgtag
      241 aagtcaacgg cgcgctcctg ccacccgacg aagtggaagt tcgttaagcc gtactcctcc
      301 acgagcccgc gcaggtactc gtagtagggc tcgtcaacta gctcgccgac ggctaggaag
      361 acgggcgggc gcgtgccgtt gcgctcgacg acgaggcgcg cggcctcgac caggtggtgg
      421 tagcccttga acgggcagac ggccccgaag gcgcagacga cggcgcggcc cccgacctcg
      481 acggggaggc tcgcgggggc tccgtccgtc aggccgggca cgtcgcgctc gtcaatcccg
      541 gtgtggacgg tcgtgcacct gcggcggaaa accggataga cgtgcgacag gagcgactcc
      601 gagacgagaa tcatcctcga cgcgaagagc tgcgagacga agcggtgcgc ccgcccgagc
      661 acgtgcaact gcccgcgcac gtgaagcacg cgtggccgcc gcgcaatcag agagcttaag
      721 ccgccgagca gcatcgcgcg cggcgtgttg aagtggaagg cgtcaacccg aagctcgcgc
      781 gcgagccgag ccagccgcag gttgtagccg accactcgcg tcaggaagac gcgcgcggcg
      841 ccgaaggccg acaggcgcag cagcaccttg ttcttcgcgc ccagctcctc gggcgcctct
      901 agcacgcgca cgtcgagccc agcgcgcctg taggcttccg tgcagcgccc ctcaccgggg
      961 aagacgacga cgggctcgat gccttcggcc ggcagctcgc gcagaagcgc cagcaggctg
     1021 cgctgcgagc cttgcaggcg gaagaactcc gcgacgaaga acaggacttt aatctttttc
     1081 ttagtcactg ccgggtcagc aactccctgc tcgacggccc gcagttaaac agcatgtcaa
     1141 ctatggagag gccggcgacg aagcccgcct ccttcatgaa caactgttcg taagtcgggt
     1201 gcttgaactc ctgcacgact atttcgatgc cggcgcgcgc gaactcgtcg cggtcgaggt
     1261 aggtgctgcc cgtccggccc gagtagtagc gcgtggcgcc gacgcgctcg cagatgttga
     1321 gcacgagccc cgacttccgc cccccggcct tcaagcccga cgagaaggcc cacttcttct
     1381 ctatgccgag ggcgcgagcc gcgaggtcta aggccgcgac gttaagctcc gcgaggcgcg
     1441 cccacgggcg cgagtaaagc tcctcgaagg ccggggcgta ttcgcggaag tgcggcgcgc
     1501 gcgcgtagca ggatacgagc gtcttccagt gcttcgcgcg ccacgcgtcg ccgcttacct
     1561 cgacctcgtt gatgggctgg cccgccttgt gcgctacggg gacggtgagc cactgcgcgc
     1621 cggcctggcc cttgacgcgc gtgcggttct ggtagtcgtt cttcgagaac tgcacgtcgt
     1681 cgagcacgac gaagaggtct gccctcgaca tcttctcgaa gaggcccgcc cacggcagga
     1741 actccggctg gtgtatggcg acgagcaaag gctagccccc cagccgcgcg acggcgtcgc
     1801 gcatcgccgc ggaggcgcga accacgtcct cttcggtcac ggccgcgtgg acgggcgggc
     1861 aaatctgccg cgccagcgcg cgctcggcct cggggaactg cccgtcgtag cagcccaagc
     1921 gctcgcggaa gaccgggtgg cggtggcagg gcgggtcata gacggcgccc atctcgatct
     1981 ggtagtcctc ggccatgagc cgccgtaggg ccgccttgtc aatcccctcg gcgagcagca
     2041 cggggaattt gtagtaggcg tgacggaagc gctcggggta ctcgggcatc tctagccagc
     2101 cctcgctcgc aagctcgcgc ctgtaccagc gcacgacctg gttgcggtgc tcgacgttct
     2161 cctccaggcg cttgagctgg tagatgccga gcacggcgcg aagctcgtcc atgcaccagt
     2221 cgttgccgag gttgacgatg gattcgagcc cgcccgcctc gctctggccg tggtgacgga
     2281 ctgagcgcgc gaaggcggcg agccgctcgt cgtctgtcgt tatcatccct cccgtccccg
     2341 tcgtcatgat cttcgtcggg tagaaggaga agcaggcggc gtcggcgagg ctcccggcct
     2401 tgcggtcgtc aatcatggcg ccgtgcgcgt gcgaggggtc ttcgaggagg aagaggccgc
     2461 ggctgcggca ctcctcgcgc aggcggtcaa tctcggggca gaccaatccg gcgatgtgga
     2521 cgacgatgat gccggccgtc gcgggcgtga ttctcgatat ggcgtcgtca acgtcgaggc
     2581 agaaggtctt cccgtccatg ccggcgagca cggggcgccc gccctcgtac atgacggcct
     2641 tgacgcagga ggcgaaggtg ttcgtaggca ctatcacttc cctgccctcg acgccgtaga
     2701 agcgcatggc tatctgcaag gccgtcgtgc aggagttgac cgagacggcg tggcgcgtgc
     2761 cgacgtactc gcggaacgac tcttcgagct cgcgcgtgtt cccgccgaat atgagccggc
     2821 cgccgcgcaa caccttctcc aaacgctcca aaatctccgg cacgtcctcg tcgtggaaga
     2881 ggggcctggc gcccgctatc ttctcggccg ccgccgctcg cgtggtcata cggtttaaga
     2941 cctcaacttt ctttttatga ttcctcgcgc ccgagcttgc gggcgagcat gcgggccagg
     3001 ccctcttcga gcgtgacgcg cgggcgccag cccgtctcgc gcccgatttt ttctatcgag
     3061 agccagcggt cgggccagag cttctgcgcg ggcgcaggca cctgctcgac gcacgccccg
     3121 gcgccgaagc gcgcggcggc cgtctcttcg actatcgcgg acaagtctcg tatggagacc
     3181 ggccggcctc cgcccaggtt atagacgaag gggcccggcg ggctgccgag cgcctcctcg
     3241 atggcgcggc acacgtccgc gacgtgtacg tagtcgatta gctgcgagcc ctcgccgaag
     3301 attctcatgg gcgcgcccgt cgcgacggcg ccgacgaact tgtcggccac cgaccccgaa
     3361 gccggctcaa gcccgcccgc ctcgccgtac acgttcgcga ggcggaagac ctgcccgcgg
     3421 cccgagtcga agacctcgcg ctcggccgcg aacttgagcg cgccatagaa gtcgtccggc
     3481 agcggctcgt gctcttccga gaggggctgc ggccgcgctc ggtaggttcc gtacacggca
     3541 atcgtcgagg cgaacataaa gcggccgacg cccgcggcca tagcctcgcg caaaaggacg
     3601 tgcgtcccgt gaacgtgcgt caggacggcg cgcgcgggcg cggccaggca gtcggcctcg
     3661 ccgcccgtcc cggcgacgtg aaggactgct ccggcgccgt ggacggcctc gcgcacgcgc
     3721 acaccgtcag tcacgtcgcc ctcgacgaac tcgacgcggc cccgagccag cgcgcgcagc
     3781 tcctcgaagc gcccgccgtg gccgaagcac acgcactcgt gcgcggccga caggcgcgcc
     3841 acgagcgcgc tgccgatgaa gcccccgccg ccgacgatga caatcttcat aaataaagct
     3901 gtcagctatc agccttttgt cttagctgac agcttatcgc tgaccgctaa ccgctaatcc
     3961 agcttcgtcc tgagccgcgt gatgacttcc gaggcgttgc gcggctcttc gccctcgaac
     4021 tgcacgagct tgaggcggag cgtgccgtcg ccggtgagga cgttgacgcc ctcgcccgga
     4081 attatcgcct cgaccttgcc ggggatgcgg ccgacgtacc tgcgcgggcg cggctcgacc
     4141 tcggccgacc agacggtgag cttgcgcccg ccgacgagcg agtaggcgcc ggggtagggc
     4201 gaggtcaggc cgcgcacgag gttgaagacc tcgcgcgtcg ggcgcgacca gtctatgcga
     4261 ccgtcctcgg ggccgcgcca gacggcgtag gtcgcctgcg agtgatcctg cgggcggcgc
     4321 ggcgcggtgc cgtcggcgag gcgcggcagg ttctctgcga gcatctcgac ggcggtctct
     4381 gtcacccacg cgtcgagcgt gcccgcgtcg tcggcgtccg tgagcgctcg ctcgcgctgc
     4441 tcgattatgt cgccctcgtc cacgccctcg gcggcataga acatcgagag gcccgtcctc
     4501 tcctcgccgt tgatgatggg ccagttgacg ggcgcgaagc cgcggtacat cgggagcagc
     4561 gaggcgtgga agcccactag gccgccccgc gccgcctcca tcacccagcg cggcaccatc
     4621 gtacgccact tgagggtgaa gatgtagtcg ggccgcagcc gcgcccagac ctccctgaac
     4681 tcctcgcgcc ctgcgttggc cgactcgtaa acggggacgc cgtgctcgcc gcacaggcgc
     4741 ttgattaact cgaggtatcc ttcctgcggc ggctccaccc ggtaggtgaa gacgccgacg
     4801 agccgcgacg cctcggactc aagcacgcgc ccgaccgcgc ggtagcctat ctcgcccgcg
     4861 cacaaaagaa ctacgcgcag gcgtccgccc cccctttgct cttcgctcac gctcacttgc
     4921 ggtagaggat gaaggcgttg ccgaagatgg cgtagctgcg gtagtgctgc gcgccccact
     4981 cggggtggtc gcgcaggaac tcggtgaacg ctttggactc gcccttgcgc gggtcgccct
     5041 tgtagtggaa ccagtcgtcg aagagcacga cggtgccttc ctgaagggcg ggcgcgacgg
     5101 cctcgaagac ggcccgcgtt gactcgtaca ggtcgcagtc aatgtgcagg agcgctatct
     5161 ccgaatactt cgacgggacg gaggcgcgcg ccgtctcctc gaagccgccg acttcgagcg
     5221 agggctcggg cagttcgcag gcgcggaaga ggtcgagcgt gacctcgggc gtgacgggct
     5281 tcccgaacgg gagcaggggg tgccaccaga ggttagtgga gaaccagccc tcgcgccagc
     5341 gctcgtgctt ctcctccgaa ggcgggaggc ccttgaagga gtcgaagccg acgacgcgcc
     5401 gctttatcgc catgacgttc gtctggtagg cgtgcgcgag gagcgccagg ctcacgcccg
     5461 tgaagacgcc gaactcggct atgtcgcccc tgaccttctc gaagccgaga aacttcagcg
     5521 cgaaagtgaa agtctcccag cgcgggtctc tctctatcaa ctgtgaaagt acgctgttca
     5581 tctgttggct aacccgctcg cccccctcgg ccctggtcga ggaacggcgg ccggagcccg
     5641 ttgtccgtcc agtcgaagtt gacgagccag cccgaagtat cctcgcccaa ctcgacgcct
     5701 ccgcgccggg agccgacggc gaaggggcgc tcctgcggcg cggcgcggaa gccgtaagcc
     5761 tcgaaggccc ggcgcatcgc gtcgtgcgag gaggtgagca tgacctcgcg cgggcggcgg
     5821 tcgccgcgcg aggcttcggc gagcgcgagc acgacggcgt gcgctagcgc ctcggcctgt
     5881 tcgccgtcgc actgcgagac gattaggcgc gagggcgact cgttgatgat gacgtagccg
     5941 ctcgtctcat tccggtcgag cacgcggaac acgcggtagc gcacgaacgg aaggcgtgtg
     6001 ttgtagcgcc agttcaggta gtcggccccc tcggccatgc gcagggagaa gggcgagcgg
     6061 cgcggcagca tctctcccgt cgccgaagcc tcttcgcgca ccgacaggcg cccggcgaac
     6121 tcaggcggca cgcggcgggc gagccggccg agcgcgacgc ggcggccgag cgagcgcgcg
     6181 ccccacttgg cgagcgcgcg caaaggtgag tcgcccgcgt gcggctggta tgcgcggttt
     6241 agtaaatagg tcttgacgcc gccgtagtag gcccacttct gcgagcgcgt tatgtggtgc
     6301 gtgtcggggc tcccgccgaa gacgacgccc gccgggtagg tcttcatcca gtgcatgaag
     6361 agcagcccgg ccgccccctt gcggaaggcg aagaagttcg agccgaacga gagcgcgagc
     6421 gggcgcccct cgtgctcgaa ccctacgcgc tcgacgccga gcgtgccggc gactgcgcct
     6481 tcggcgtcga ggaagaggta gaggcggcag cgctcggccg aagcgtagta gtagtcaacg
     6541 aacggccggt gcgtgaggct cgcgctctgc ggcgtcgagg ccgctgcctc gcgcagggcc
     6601 tcgaagtgct cgggcgcgta ctcgactatg cgcgggcgcg gcgccgccgc tccggccggc
     6661 gccgcgcgcc gtgtctcttc cgcctgaatc aaagggcgct cttctccgcg gcgccctcga
     6721 cgtagccgag cacctgccgg aacgaaacga aatgttcgag gtcgtcgggc gcgacctgca
     6781 cgccgaactc ctcctcgacg agcgagacca aagtgaccga cgccatcgag tcccaagact
     6841 cggtcgcgcc catagcggcg cgccgcagct cgtcctcgcc cgcgtcgggg aagacggccg
     6901 agaagcagtt tagcagacgt gtctccgttc ccattcttgt cgtccttagc cggtttgaaa
     6961 agtcttgtgg tagagcggcg ggcatttctc cgcgaacgtc tccctcgtca ggcgggggcg
     7021 cccgccgccg tccacttcgg cgaactcgcg caggaaggcc cgcagcggcg cgttcttcgg
     7081 cgtctcggcg aagtcgaact cgatctcgcg cgcgccgaag cgctcgaaca gcgcggcgag
     7141 gcagcggtgc tcgatcctgc gcgcgaaggc gcggcagctc ataacccacg tccccacacg
     7201 cagccgctcg ccctcccgcc gcccggccag gactgcgatc ttgccgagcg gcccgtactt
     7261 gtccttgtag gaggtaacca tcaggaagcc gccgggctct tcgaggcgcc ggcgccagag
     7321 cgcctcggtg tagcgcacgc cgtttaagtt gaactggttc gtcttgttga ccagctcgaa
     7381 ggcgcgcgcg tccgacgccc ccgcgtcgaa gctgagcgtc aattccgcct cggcctgttc
     7441 gaggaagcgc tcggtgtgcg aggagtcgcc gccgccgttc acttcctccg cggccgcggc
     7501 cgaccgcctg acggtttgca gccgcagcgc gtcctcttcc agaagcgcgc tcttgccgaa
     7561 gaggtcgcgc aggcgcgcga gcaagcggta ggcgccctcg tcgtcgccgc gcgggaactc
     7621 gacgcactcg atgtcggggt gcgccgcctt cacctctgcc agctcgatgg ggctgtcgtc
     7681 cacgaagact acgccgtcgg cgcccacgtt ccacgcgcgc agtatgcgcg atacggcctc
     7741 ggacttggcg ccccagccga cctcgacggg gaacagatcg tccttcgaga gcgccaggtc
     7801 ttcgcgggcg agcgctcggg cggccgcctc cggctcgttc ttgctggcga cggcgacgag
     7861 cactcccgtc cgcgccagag accctagaag catctggtag agcgcgtgcg cctgcgaatg
     7921 cgcgtcgagg ccccacgata cgccctcggc cccgacctcg ccgacgaggc cgcgccagag
     7981 cgtgtcgtcg aggtctgtga tcaagccctt cttcggcggc gggggcagca gcgccgtcgc
     8041 caacgcttcg gccaggtcgg aggcgtgcgc gagctggtag gggaagcccg tcgtcagctc
     8101 cgacttaacg tcgagccggg cggcgagcgg cgagcgctcg tccaggcgcg actggcttat
     8161 gacgcgcacg ccgcgcccgc gcgagacgcg cgccgccaag tcggccgccg cgcgcctgag
     8221 attaagatcg aaggcgcctg actgccagcc cggctcgaac gaggcgggcg ggaggggcag
     8281 ggtcggcaca gcgacggcga gcggcacgcg ctccgaagct ttgacaatcg cttcggccag
     8341 ccactcggcg cgctcggcgg cggtgcggag cacgtcgggc aaaacttccg gcgaccaact
     8401 gccggcgccc cttatgccga gccgcgggtc gaggtcgggc cactcgatga cgaccgccgc
     8461 ggcgtccagg tcgcccggct cttccgtcag gcggcggagg ctccccgtca agtcgccgta
     8521 gaggccagta gccgtgccga ctgcaagccc cggccgcctg cggcgcaggt gcgcgccgag
     8581 gaaggtttcc aggtgcagcg gcgtgaagcc gcaggcgagg aaggccctga agctttccgc
     8641 gccctcgggc ggccgctcgc gcaggagctt tagcgcttcg acgagcttca tgccgcacac
     8701 tcttcgtcgg ccggctctgc cgcgcagaac tcgtcgcgga actcggtgag cgtcgcgccc
     8761 ttgaacgtcg ccgacgcggc ggcgaaaagc tcttcgaggt gctcgtagag cgtctcgacc
     8821 gagcgcgcgt cggggaagta ggggctcccg cccggcataa gctcggagga gtggagcatg
     8881 aactcggcgc aggggcgacg ctctgcccgt gcgcgccgca gcacgccgag catgcgcgcg
     8941 aggttgcgcc cgtccggcct cagccacgcc tcgcgcgggc cgagcgccct gcgcgccacg
     9001 cgccgcagcg gagagggcag cgagtcgcgc agacggttcg ggttgaggta gatggtcatc
     9061 ggcacttcga ggagcgtcga gtcgccctcg cggctcacgt cttcgaggtc gaggcggtag
     9121 ggaagctcgg ggaagcgggt gtagtccgtg ccgccgcggc ccgcggggtc gcccggcacg
     9181 ccgcgccagg agacgtgcgg cgttaccgag cagtcaaccg tgtagccgaa ctcgacgagc
     9241 agcctggcgt agcgcgagtc gaaggcccag cgccccgcgc ggtggctcgt catcttcacg
     9301 ccgaaggtct cctccagcgt ccctgtcatc acccgcacct tctcgcgcat gacctcgtcg
     9361 gggtactcga cgaggtaggg catgtgctcg tagtcgtccg ccgtgagcgg cacgagcggc
     9421 ggcgagttcc aggcgtgcag gtgcatgccc acctctgcgg cgccgcgcgc gagcgcgtcg
     9481 cgggcgagct cgacgaaggc ggcgctcgta gccatctcgt agttcgtaag ataagtgggc
     9541 ttcaggccgt ggcgctcgca aagggcctgg aagcgcggga gatagcgtgc gttctccgtc
     9601 gtcgtctcgc cccggcgcga ccagccgtcg tcgccctccg tgtcaatcgt gattatgaaa
     9661 ctcgggatca tgggattagc cacggaggca cgcaggcaca aagaataatt ttcagatttc
     9721 agatttcaaa tctctgtgcc tctgtgcctc cgcggcagtt tttctaaatc ctcacgccgt
     9781 tctttcgagc ccaccagcgc agcacgaaca gaatccagag cttctcgccg tggtcgcgct
     9841 tgccctgccg gtgctcctcg tagagccgct cgacggcgcc cttgcggaag acgccgcccc
     9901 cggcgggctc ggccacggtg tctaagaaca tctcgcgcag ctcgttcttg aaccactcgc
     9961 ccacggggat ctcgaagccg cgcttcggca ggcggaagac gtgcggcggg agcacctgcc
    10021 ggaaagtctc gcgcagtatg aacttcttgc ggagccagtt gactttggcg tttccgggca
    10081 ggcggaaggc aagctccgct atgcggtagt cgaggaacgg cgttcgcacc tcgagcgaga
    10141 cgcgcatgct catcatgtca actttggtga gcacgtggtc ggcgagcttt atcttcgcgt
    10201 ccacgtagag catgcggttg atgaggtctg cgccgagcgc gggggcgtcg tagtggcggc
    10261 ggaagactct gcgcgcaagc tccagagaga gcgtgcggaa cgcggggtcg taaacgtcct
    10321 cgggcgccat gtcgttgaac ttgttcgtca ggcggaagaa gcgctccgac gggacggcgt
    10381 tgacggcgcg cagaaacctc tgcgcgcgcc gcacgcttcg cgccagcgtg ctcgcgtccg
    10441 acgaggggag cccgaagacg gccggctcta tcacgctgcg cgacagagcg cgcggcagcc
    10501 gcatgtaaac gctcgcaagc ggctcgagca ggtaggctcg gtagccggcg aaggtctcgt
    10561 cggggccgtc gcccgagagc gccacggtga cggactcgcg cgcgagccgc gagatgtgga
    10621 acatcgggac ggcggaggag ctgccgaacg gctcgtcgaa gtggtctaag acgcccggga
    10681 tggactcgcg cacggcgtcc gtcgtcagta gaagctcgtg gtgctcggtg ccgagaaagg
    10741 cggccgtgcg ccgcgccgtc tccgactcgt cgtaggcgcc cgcgcccttc ttcgcatcca
    10801 ggaagccgag cgtgaaggtc ttcatgcgcg acggcgaaag ccgcgccgcg aggctcgcta
    10861 tgatgctcga atctatgcca ccgcttaaga gcacgcccac ggggacgtcg ctcacgaggc
    10921 ggcggcgcac ggcgtcctcg gtgagcgcga acagctcgcg cttggcggcg ccgaggttcc
    10981 cgttccgcaa cgccgagccg ttcgtcgcgg ccgcggcgcc gcgcccgcgc tcgccgaaca
    11041 cgtcccagta ttcgcgctcc gagagccgcc cgtccttgag cacgaggtag tggccgggcg
    11101 cgagcttgcg cacgccgcgg aatatggtga aggggtgcgg gattatccgg aacgtcaggt
    11161 agaggtcaac ggcctcccag tctatgtcgc gcggaagcga cgggtcttcc agaagtgact
    11221 ttatctctga ggcgaagcgg aggcccccgc cctcggtcga gtagtagagc ggcttgacgc
    11281 cgaggcggtc gcgcgcgacg aagaggctgt ggtcgcgctc gtcccagacg gcgaaggcga
    11341 acatgccgtt caggcgcgag aggctctgcg gcccccactg gcggtaggcg ttgaggacga
    11401 cttcggtgtc cgtgtcggag cggaaccggt ggcctagcgc ctccagctcg cgccgaagct
    11461 cgcggaagtt atagacctcg ccgttgtagg ttatgcgcag
//
LOCUS       DASPKR010000624         2988 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1001179, whole genome shotgun sequence.
ACCESSION   DASPKR010000624 DASPKR010000000
VERSION     DASPKR010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1001179"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..493
                     /locus_tag="VD968_16735"
     CDS             <1..493
                     /locus_tag="VD968_16735"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HYE16088.1"
                     /translation="RRRRATGRRKIHQQGLLGKGEAARELLVTVGWTVALWAAIAVAN
                     MLTLRAFGLSLGLSETLFVLGWSLVGSLVPTPGGGAGTYHAATSYGLTAFLAVPETEA
                     KAATIVLHLVVFGSALFFGAYYFLRGGVSLGRLRELASAEATAGAAEPRPEAGGRGAA
                     FQP"
     gene            524..1003
                     /gene="nrdR"
                     /locus_tag="VD968_16740"
     CDS             524..1003
                     /gene="nrdR"
                     /locus_tag="VD968_16740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016290273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HYE16089.1"
                     /translation="MRCPFCGYLEDKVVDSRESREGDAIRRRRECLRCERRFTSYERI
                     DEIPYMVVKKDGRREPFDRNKVMAGLLRACEKRPIPATKLDSIVNAVEKYVQESSERE
                     RPTTKIGELIMRRLKELDKVAYVRFASVYLEFEDVTEFMHELKTLVRTRSGATARKS"
     gene            1043..1495
                     /locus_tag="VD968_16745"
     CDS             1043..1495
                     /locus_tag="VD968_16745"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HYE16090.1"
                     /translation="MPLTVLERGDLERLRSRVGRLFLALQEAADLVGAEKPGAWLPPA
                     DLCESPSCVTVRVELPGVRPEHMQVSLSGGHLRVTGRKRKGAPRAVISHLCSERSYGQ
                     FSRSIPLRWPVRAQEATAELRDGLLTVRLPKIQERRGGEIKIEVKSDR"
     gene            1538..>2988
                     /locus_tag="VD968_16750"
     CDS             1538..>2988
                     /locus_tag="VD968_16750"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HYE16091.1"
                     /translation="MAQISDIAESIEAAAGGDGEQQLQVPESLPVLPLRDIVIYPFMI
                     VPLFVSREKSIRAVDEALGENRMIFLVSQRDLDKEEPGGEDLYPTGTVAVIMRMLKLP
                     DGRIRILVQGLTRARVEEVTAGGEYLKARLSPMAEPGAPERSLEVEALVRNVRASMER
                     AANLGKNISPEVMAIVATLDEPGRLADLAASNLELKVEDAQSVLDISDTTARLRRVND
                     LLNKEIEVLTVQQEINTQARADIDRSQREFFLRQQLKAIQTELGEGNELAEELAQFRD
                     KIESAGMPKHAEEEALRQLKKLERMHPDAAETATLRNWMEIMTDLPWSKASVDNLDLA
                     KAQQILDEDHYGLEKVKERIVESLAVRKLKEKPKGSILCLVGPPGVGKTSLGRSIARA
                     LDRKFVRLSLGGLHDEAEIRGHRRTYVGAMPGRIIQALQQAGTNNPLIMLDEIDKVGA
                     DFRGDPSSALLEVLDPEQNNSFRDNYLGVTFDLS"
BASE COUNT          531 a          957 c         1030 g          470 t
ORIGIN      
        1 acggcgtcgc cgcgccaccg gccgcagaaa gatccaccag caaggtttgc tcggcaaagg
       61 agaggccgcg cgcgagcttc tggtgacggt cggctggact gtggcgcttt gggcggcgat
      121 tgcggtggcg aacatgctga cgctgcgcgc gttcgggctg tcgctggggt tgagcgagac
      181 gctgttcgtg ctcggctggt cgctcgtcgg gtcgctcgtg cctacgcccg gcggtggcgc
      241 cggcacttac cacgcggcga ctagctacgg cctgaccgcc ttcctcgcag tgcctgagac
      301 ggaggcgaag gcagcgacaa tcgtcctgca cctggtcgtc ttcggctcgg cgctcttctt
      361 cggcgcctac tacttcctgc gcggcggcgt gagcctcggg cgtctgcgcg agctcgcgtc
      421 ggccgaggcg accgcgggcg cggccgagcc ccggccggag gcgggcgggc gcggggcggc
      481 ttttcaacct taaactgctt gagtgcctgg ccgggatggg cttatgagat gtcctttctg
      541 tggttacctc gaagacaagg tcgttgactc gcgcgagtcg cgcgagggcg acgccatacg
      601 gcgccggcgc gagtgcctgc gctgcgagcg gcgcttcacg tcctacgagc gcattgacga
      661 aatcccctac atggtcgtca agaaggacgg ccgccgcgag cccttcgacc gtaacaaggt
      721 catggcgggc ctgctgcgcg cctgcgagaa gcggcccatc cccgcgacga aactcgacag
      781 catcgtcaac gccgtagaga agtacgtgca ggagtcgtca gagcgcgagc ggccgacgac
      841 gaagataggc gagttgataa tgcggcgcct caaggagctc gacaaggtcg cctacgtgcg
      901 cttcgcctcc gtctatctcg agttcgagga cgtgaccgag ttcatgcacg agctgaagac
      961 gctcgtgcgc acgcgctcgg gcgcgacggc gcggaagagt taaaggggcg gcgctctcgc
     1021 caaagtcctt atgaagcagg ctgtgccact gacggttctc gagcgcggcg atctggagcg
     1081 gctgcggtcg cgcgtgggcc gactgtttct ggccttacag gaggcggccg atctggtggg
     1141 cgcggaaaag ccgggcgcct ggctcccgcc ggccgatttg tgcgagtcgc cgtcgtgcgt
     1201 cacggtgcgc gtcgagcttc cgggcgtgag gcccgagcac atgcaggtgt cgctctcggg
     1261 cggccacctg cgcgtgacgg gcaggaagcg caagggcgca ccgcgcgccg taatctcgca
     1321 tctatgctcg gagcgcagct acgggcagtt ctcgcgctcg atcccgctgc gctggcccgt
     1381 gcgcgcgcag gaggcgaccg ccgagctgcg cgacggcctt ctgacagtcc gcctcccgaa
     1441 gatacaggag cggcgcggcg gcgagataaa gatcgaagtg aagagtgaca ggtgacgagc
     1501 gaggacaggg gacaagccgg gtaacactga ctaatttatg gctcagattt cagacatagc
     1561 ggagagcatc gaggcggcgg ccggcggcga cggcgagcag cagttgcagg tgccggagtc
     1621 gctgcccgtc ctccccttgc gcgacatcgt catctacccc ttcatgatcg tgccgctctt
     1681 cgtctcgcgc gagaagtcca tacgcgccgt tgacgaggcc ttgggcgaga accgcatgat
     1741 cttcctcgtc tcgcagcgcg acctcgacaa ggaggagccg ggcggcgaag acctctaccc
     1801 gacgggcacg gtggccgtca tcatgcggat gctcaagctc ccggacggcc gcataaggat
     1861 tctcgttcag gggctgacgc gcgcgcgcgt cgaggaggtg acggccgggg gcgagtacct
     1921 gaaggcgcgc ctctctccca tggccgagcc gggcgcgccc gagcgctcgc tggaagtcga
     1981 ggcgctggtg cggaacgtgc gcgcctcgat ggagcgcgcc gcgaacctcg gcaagaacat
     2041 ctcgccggag gtcatggcga tagtcgccac gctcgacgag ccgggccgcc tcgctgacct
     2101 cgccgcctcg aaccttgagc ttaaagtcga ggacgcccag tccgtcctag acatctcgga
     2161 cacgacggcg cgcctgcgcc gcgtcaacga cctcctcaac aaagagatcg aagtcctcac
     2221 cgtccagcag gagataaaca cgcaggcgcg cgccgacatt gaccgctcgc agcgcgagtt
     2281 cttcctgcgc cagcagctca aggccataca gaccgagctg ggcgagggca acgagctggc
     2341 cgaggagctg gcgcagttcc gcgacaagat agagtcggcg gggatgccga agcacgccga
     2401 ggaggaggcg ctgcggcagc tcaagaagct cgagcgcatg cacccggacg cggccgagac
     2461 tgccacgctc aggaactgga tggagataat gaccgacctg ccctggtcga aggcgtcggt
     2521 ggacaacctg gacttggcga aggcccagca gattctcgac gaggatcact acgggctcga
     2581 aaaggttaag gagcggattg tcgagtcgct ggcagtcagg aagctcaagg agaagccgaa
     2641 aggctctata ctctgcctcg tcggcccgcc gggcgtcggc aagacgagcc tcgggcgctc
     2701 catcgcgcgg gcgctcgacc gcaagttcgt gcgtctctct ctgggcggcc tccacgacga
     2761 ggcagagatt cgcggccacc gccgcacata cgtcggcgcc atgcccggcc gcatcatcca
     2821 ggccctacag caggcgggga ctaacaaccc gctcataatg ctcgacgaga ttgacaaggt
     2881 cggcgcggac ttccgcggcg accccagctc ggccctgctt gaagtcttag acccggagca
     2941 gaacaactct ttccgcgaca actacctcgg cgtcacattc gatttatc
//
LOCUS       DASPKR010000625         2004 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_230905, whole genome shotgun sequence.
ACCESSION   DASPKR010000625 DASPKR010000000
VERSION     DASPKR010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230905"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..190)
                     /locus_tag="VD968_16755"
                     /pseudo
     CDS             complement(1..190)
                     /locus_tag="VD968_16755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016079541.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
     gene            433..909
                     /locus_tag="VD968_16760"
     CDS             433..909
                     /locus_tag="VD968_16760"
                     /inference="COORDINATES: protein motif:HMM:NF014119.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HYE16092.1"
                     /translation="MRARLARGGAPAPAPHLALGARGEELAADLLLGMGYRLVAANFK
                     APVGRNLRGAVVSAEIDIIAYDGETLCFVEVKTRASDDFARPERNVDLRKQRQVTRAA
                     RAYRRLMGVAEAPHRYDVVSVLLPPPGRDAKAPAPRLKLLRGFWTDAKFRKRRWEG"
     gene            complement(980..>2004)
                     /locus_tag="VD968_16765"
     CDS             complement(980..>2004)
                     /locus_tag="VD968_16765"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HYE16093.1"
                     /translation="MKTERLFRSGEQGYESVVSLIGDDASRVITRRESTTEPPNYFVR
                     TLGAGGEQLRALTQFPDPTPQLRGIKKQLIKYKRADGVALSFTLYLPPDYKEGTRLPT
                     VVWAYPLEFSDPGTAGQVTGSAQRYTTIAGPSHLFFLLAGYAVLDNATMPIVGDPEKM
                     NETFVEQIVSSAKAAIDKAAEMGVTDPERVGVGGHSYGAFMTANLLAHSDLFRAGIAR
                     SGAYNRTLTPFGFQSERRTLWEAPELYVKVSPFMLAHKINEPILLIHGEADNNPGTFP
                     MQSERMYQAIRGTGGTVRYVTLPLESHGYAARESTEHTLYEMISWFDRHVKNAQPRSK
                     TMRAEK"
BASE COUNT          322 a          674 c          667 g          341 t
ORIGIN      
        1 gtatgacggc ggtctcgtca ggcacgatgc cgccggtgtc cacgacggag aagcggcggc
       61 ctgcccactc ggtctcgccg tagatgcggt cgcgcgtaat gcccggctcg tcgcccacga
      121 tggagcggcg ctcgccgacc aagcggttga agagcgttga cttgcccacg ttcggccgcc
      181 caacaatcgc cacgagcggc agcacggccg ccacgcttcc ctcttcgctc gacatcgcgg
      241 ccaagtttat cccgcgcccc ggagcgtcgc aagcaggtca aacttccctt gccgcccgcg
      301 cgcacaaaga gttactcttc gcggcgcggt cccgcccccg cgaacaagtc ccgcccgccc
      361 aagtcttatt taataagagc acgaacggcc gacatgcgcc tgctcagtct ccccgcacgt
      421 ttaataaaag gattgcgcgc gaggctcgcg cgcgggggcg cgcccgcgcc ggccccgcac
      481 ctcgcgctcg gcgcgcgcgg cgaggagttg gcagcagacc tcctgctcgg catgggctac
      541 agacttgtgg ccgcgaactt caaggcgccc gtcgggcgca acctccgcgg cgccgtcgtc
      601 agcgccgaga ttgacataat cgcctacgac ggcgagacgc tctgcttcgt cgaagtaaag
      661 acgcgcgcct ccgacgactt cgcgcgcccc gagcgcaacg ttgacctgcg caagcagcga
      721 caggtcacac gcgccgcacg cgcctaccgc cgactcatgg gcgtcgccga agcgccccac
      781 cgctacgacg ttgtcagcgt cctactcccg ccgcccggcc gcgacgcgaa ggcgcccgcc
      841 ccgcgtctca aactcctccg aggcttctgg acggacgcta agttccgcaa gcgccgctgg
      901 gaaggctaag aaagtagaag gcagaaggaa gtaaaaacgt taagcgcgtc ttgactgcct
      961 tctgccttct gccaacttct cacttctccg cgcgcatcgt cttggagcgc ggctgggcgt
     1021 tcttaacgtg gcggtcgaac caggagatca tctcgtagag agtgtgctcg gtggactcgc
     1081 gcgccgcgta gccgtgtgat tcgagcggga gcgtgacgta cctgacagtt ccgcccgtgc
     1141 cgcgtatggc ctggtacatg cgctcggact gcatcgggaa tgtgccgggg ttgttgtcgg
     1201 cctcgccgtg tatgagaagt atcggctcgt ttatcttgtg ggccagcatg aagggcgaga
     1261 ccttcacgta aagctccggc gcctcccaga gcgtgcggcg ctcgctctgg aagccgaagg
     1321 gcgtgagcgt gcggttgtat gcgccgctgc gcgctatgcc ggcgcggaag aggtctgagt
     1381 gggcgagcag gttcgccgtc atgaaggcgc cgtaggagtg gccgccgacg ccgacgcgct
     1441 ccgggtcggt cacgcccatc tcggcggcct tgtcaatcgc cgccttcgcg ctcgacacga
     1501 tctgctcgac gaaggtctcg ttcatcttct ccgggtcgcc gacgatcggc atcgtcgcgt
     1561 tgtcgagcac ggcgtagccc gcgagcagga agaagaggtg cgaaggcccg gcgatggtcg
     1621 tgtagcgctg ggccgagccc gtcacctgcc cggccgtgcc ggggtcgctg aactccagcg
     1681 ggtaggccca gacgacagtg ggcagccgcg tcccctcctt gtagtcgggc ggaaggtaga
     1741 gcgtgaagga gagggcaacg ccgtcggcgc gcttgtactt gatgagctgc ttctttatgc
     1801 cgcgcagttg cggggtcggg tccgggaact gcgtgagcgc gcgtagctgc tcgccgcccg
     1861 cgccgagcgt gcggacgaag tagttgggcg gctccgtcgt gctctcgcgc cgcgtgatga
     1921 cgcgcgaggc gtcgtcgcct atgagggaga cgaccgattc gtagccctgc tcgcccgagc
     1981 ggaacagccg ctccgtcttc atcg
//
LOCUS       DASPKR010000626         2238 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_231131, whole genome shotgun sequence.
ACCESSION   DASPKR010000626 DASPKR010000000
VERSION     DASPKR010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231131"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..219)
                     /locus_tag="VD968_16770"
     CDS             complement(<1..219)
                     /locus_tag="VD968_16770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16094.1"
                     /translation="MNPLSRLISPRLPPAAVGLGGDGAGVVQLERRRDAFAVRSAAYV
                     PLPAGLLRPNFDEPNVSDPAELAGALAHL"
     gene            complement(338..745)
                     /locus_tag="VD968_16775"
     CDS             complement(338..745)
                     /locus_tag="VD968_16775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HYE16095.1"
                     /translation="MALRPSRFSSPSGFTLLELMIVISILVILAMIAMAQYNKTVLAA
                     KEATLRENLFQMRKMIDQYAADKGKLPQSLDDIVTAGYLHEIPTDPMTDQKDWQVEFG
                     DDPGATDASQGVVQVRSSSGELSSDGQTRYNEW"
     gene            complement(783..1475)
                     /locus_tag="VD968_16780"
     CDS             complement(783..1475)
                     /locus_tag="VD968_16780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HYE16096.1"
                     /translation="MTGRLQGPEFRREGGWTLIELVIVITVLTVLTLGVIPLVKTSVR
                     RQKEQRLREVLAEMRAAIDEFRRDTVGMQCGPGGTAQVVAPNPNPNPNQPGIPGQFTY
                     IDPRSRVVISDCKIFGVDNPERYPPDLQTLVDGVDVVPRPSAGGGAVAGAGLDSVGGS
                     ATGNSGGLIPKKKHYLREIPVDPITGERDWCFLSVYDEADSGCSSAPENIFDVRSKAE
                     GTALNGEKYSDW"
     gene            complement(1483..>2238)
                     /locus_tag="VD968_16785"
     CDS             complement(1483..>2238)
                     /locus_tag="VD968_16785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cohesin domain-containing protein"
                     /protein_id="HYE16097.1"
                     /translation="MIIEAEREEQLARARQLPTNQTIQLPAQPGEEVSFVPAPKPFAD
                     AAATSPAEGAAAAPANTSGAAAVNVSIKTEEKPPADAARPAGGAASAATAAGAASAPA
                     VAAAAPAESAAELLMMPEQQELKAGERRRVMVFMKTDAPVGLAAATLRFDPKALAVRS
                     VTQGSLASDKSLAPVLTQSVDAARGVLVVSVAPAAGAAPLSGEGLLLVIEIEGLAAGD
                     AALEFDAGKVHLVATDGRTVRPRLTGARLKVTQ"
BASE COUNT          317 a          770 c          778 g          373 t
ORIGIN      
        1 gaggtgcgcg agcgcgccgg ccagctcggc ggggtcggag acgttcggct cgtcgaagtt
       61 gggccgcagt agccccgcgg gcagcgggac gtatgcggcg ctgcggacgg cgaacgcgtc
      121 gcggcgccgc tccaactgca caacgcccgc gccgtcgccc ccgagcccca cggccgcagg
      181 cggcagccgc ggcgagatta gcctgctaag tgggttcata agcaagtagg cagaaggccg
      241 caggcagtag gcagccttaa gagccttgct gaccactgcg cgccttgcgc gtaatgtctt
      301 actgccttct gctttccgcc ttctgccttc tgattcgtca ccattcgttg tagcgcgtct
      361 ggccgtcgga ggagagctcg ccggagctgc ttcgcacctg gacgacgccc tgcgaggcgt
      421 ccgtcgcgcc ggggtcgtcg ccgaactcga cctgccaatc cttctggtcg gtcatagggt
      481 cggtggggat ttcgtgcagg tagccggcgg tgacgatgtc gtcgagcgac tgcgggagct
      541 tgcccttgtc ggccgcgtac tggtctatca tcttccgcat ctggaagagg ttctcacgga
      601 gcgtcgcctc cttcgccgcc agcacagtct tgttgtactg agccatcgcg atcatcgcca
      661 gtatgacgag aatcgagatg actatcatca gctccagcag cgtgaagccg ctgggcgagg
      721 agaagcgcga agggcggagc gccaacgcgc cggaggcccg cccgaaccgt ccccttcccg
      781 gcctaccaat cactgtactt ctccccgttg agcgcagtcc cctccgcctt cgagcgcacg
      841 tcgaaaatgt tctccggggc ggaggagcag cccgagtcgg cctcgtcata gacggataag
      901 aagcaccagt cgcgctcgcc cgttatcggg tcaacgggta tctcgcgcag gtagtgtttc
      961 ttcttcggga tgagcccgcc ggagttcccc gtcgcggagc cgccgacgct gtcgaggccg
     1021 gcgcccgcca cggcgccccc gcccgccgag gggcgcggca cgacgtcaac gccgtccacg
     1081 agcgtctgca agtcgggcgg gtagcgctcg gggttgtcaa cgccgaatat cttacagtcg
     1141 gagatgacga cgcggctgcg cgggtctatg taggtgaact gtccgggtat gccgggctga
     1201 ttagggttgg ggttcgggtt cggcgcgacg acctgcgccg tgccgcccgg cccgcactgc
     1261 atgccgactg tgtcgcggcg gaactcgtct atggcggcgc gcatctcggc gaggacttca
     1321 cgcaggcgct gctccttctg ccgccgcact gaggtcttga cgagagggat gacgccgagc
     1381 gtcagcaccg tcagcaccgt gatgacgatg acgagctcga tgagcgtcca gccgccctcg
     1441 cgcctaaact ccggcccttg aagcctgcct gtcatcgccg tcctactgcg tcactttcag
     1501 cctcgcgccc gtcaggcgcg ggcgcacggt acggccgtcg gtggcgacga ggtgaacctt
     1561 gccggcgtcg aactcgagcg cggcatcgcc agcggcgagc ccctctattt ctatgacgag
     1621 cagaaggccc tcgcccgaga gcggcgcggc gcccgcggcc ggcgcgaccg agacgaccag
     1681 cacgccgcgc gcggcgtcaa ccgactgcgt gagcacgggc gcaagcgact tgtcggaggc
     1741 gagcgaccct tgcgtgacgg agcgaacggc cagcgccttc gggtcgaacc ttagcgtcgc
     1801 cgcggcgagc cccacgggcg cgtccgtctt catgaagacc atcacgcgcc tgcgctcgcc
     1861 ggccttcaac tcctgctgct cgggcatcat cagaagctcg gccgcgctct cggccggcgc
     1921 ggcagcggcg acggccggcg cgctcgccgc cccggccgcc gtggcggccg acgcggcacc
     1981 gcccgccggt ctggccgcgt cggcgggcgg cttctcttcc gtcttgatgc tcacgttgac
     2041 ggccgcggcg cccgacgtgt tggcaggcgc cgcggcggcg ccttcggcgg gcgaggtggc
     2101 ggccgcgtcg gcgaacggct tgggcgcggg gacgaagctc acttcctcgc cgggctgcgc
     2161 gggcagttgt atggtctggt tggtcgggag ctggcgcgcg cgcgcgagct gctcctcgcg
     2221 ctcggcctcg atgatcat
//
LOCUS       DASPKR010000627         3921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1132934, whole genome shotgun sequence.
ACCESSION   DASPKR010000627 DASPKR010000000
VERSION     DASPKR010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3921)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3921
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1132934"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..949)
                     /locus_tag="VD968_16790"
     CDS             complement(<1..949)
                     /locus_tag="VD968_16790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16098.1"
                     /translation="MKKTIYYLLLGYLFALAAFNVSALRSAYADCPGCFENETPMAGH
                     TPTGGGRPYYAIYMDSSATANPVYSNALNAAMTQWNNAPGTAAGSQAPVSFRQWSGNP
                     NDPLPQIVLKIEPLGTNKKGEKICGRLTAQSYPSSPGTIINYVLTLPPEAATWTQDRI
                     RDVIAHELGHALGVDDVNQGCTSVMQQSSSDCKTSVHSGVERRDVDAAIKYATNRADC
                     DEERGDETQTGDPGGGDGDPCGGDPCCGDPYCGDPCQGDPCCYDPYCGDPCRGDPNCG
                     QECHTVCTQVCTTECTVWDDYGYCYWYEQVCDPPECHVEC"
     gene            complement(987..1694)
                     /locus_tag="VD968_16795"
     CDS             complement(987..1694)
                     /locus_tag="VD968_16795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16099.1"
                     /translation="MKTRLTLLAVAAVLGTAWTIFFAMPGSPRLRPAQAQGQDPGFNF
                     TFEGLAQRAISDGQPAVKISTTIDDIDVTTLDDAMARYSVITVQPSLVAPYRTGDLTI
                     ESWSKMTITETLSSRPFVPPCESCAQPPPKPGDFPDANWNEILTSEVGGTISVNGVTF
                     TQTTGIPLFNANEQYVLFVNINPSNRVATVIGGGFRLLPGGYMSPLDTSDNQSVIVTE
                     VAARFNNSLDQLRAALQ"
     regulatory      2270..2345
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00521"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="SAM riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00521"
     gene            2414..>3921
                     /locus_tag="VD968_16800"
     CDS             2414..>3921
                     /locus_tag="VD968_16800"
                     /inference="COORDINATES: protein motif:HMM:NF014615.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HYE16100.1"
                     /translation="MADFLKTLNERVVVFDGAMGTNLHAQDLSVDDFGGPQFEGCPEY
                     LLVTKPEAVERVHADFLAAGCDVIETDSFGATAIVLAEYQIAHMAYELNVRAAQLARR
                     VAADFSTRERPRWVAGSMGPGTKLPTLGQVSFLEARDAYGEQARGLLDGGADLLIVET
                     CQDMLQVKAALAGIFREFAASRRRVPIIAQVTIEQQGTMLLGTEIAAALTAVEPFPID
                     VFGMNCATGPKQMAENVRFLCQNSRFPVSVIPNAGIPDNVGGHAVFRETPESLAADLS
                     HFARDLGVSIVGGCCGTTPAHIKAVVEAVGGLTPLRREAPHVPACSSLYVQQPYRQDT
                     SFLIVGERVNASGSKRMRDLLKEEDWDGLVSLAREQEREGAHVLDVNVDYVGRDGVRD
                     MHELASRLVTNVRVPLMLDSTEWEKMEAGLQHSGGKCILNSTNYEDGEPRFRKVIGLA
                     KEYGAGVVVGTIDEEGMAREAGKKFEIARRAYEQATGELGFPASDIFFDPLAL"
BASE COUNT          638 a         1249 c         1330 g          704 t
ORIGIN      
        1 agcactcgac gtggcactcg ggcgggtcgc agacctgctc gtaccagtag cagtagccgt
       61 agtcgtccca caccgtgcac tcggtcgtgc agacctgcgt gcagacggtg tggcactcct
      121 gcccgcagtt ggggtcgccg cggcacgggt cgccgcagta ggggtcgtag cagcaggggt
      181 cgccctggca cgggtcgccg cagtacgggt cgccgcagca cgggtctccc ccgcacgggt
      241 ctccgtcgcc gccgccgggg tcgcccgtct gtgtttcgtc gccgcgctcc tcgtcgcagt
      301 cggcgcggtt cgtggcgtac ttgattgcgg cgtcaacgtc cctgcgctcg acgccggagt
      361 ggacggacgt tttgcagtcc gacgagctct gctgcatgac gctggtgcag ccctggttca
      421 cgtcgtcaac gccgagggcg tgcccgagct cgtgcgcgat aacgtcgcgt atgcggtctt
      481 gcgtccaggt cgcggcctcg ggcgggagcg tgagcacgta gttgatgatg gtgccgggcg
      541 agctcgggta cgactgtgcc gtcagcctgc cgcaaatctt ctcgcccttc ttgttcgtgc
      601 cgagcggctc gatctttagg acgatctgcg gcagcgggtc gttcgggttc cccgaccatt
      661 gccggaagct cacgggcgcc tgcgacccgg cggccgtccc cggcgcgttg ttccactgcg
      721 tcatcgccgc gttcagggcg ttcgaataga cggggttggc cgtggccgaa gagtccatgt
      781 agatggcgta gtagggccgc ccgccgcccg tcggcgtatg gccggccatc ggcgtctcgt
      841 tctcgaagca gccggggcag tcggcgtagg ccgagcgcag cgccgacacg ttgaaggccg
      901 cgagagcgaa caggtaaccc aagagcaggt aatagattgt tttcttcatt gctcccccac
      961 tcgtcacagc gcgtgcgccc gcggcgtcac tggagcgcgg ccctcagttg gtcgagcgaa
     1021 ttgttgaagc gggcggccac ctccgtgacg atcacggact ggttatcgct cgtgtcgagg
     1081 ggcgacatgt acccgccggg cagaagcctg aagccgccgc cgatgaccgt cgccaccctg
     1141 ttcgacgggt tgatgttgac gaacaggacg tactgctcgt tggcgttgaa gagcgggatg
     1201 cccgtggttt gcgtgaaggt cacgccgttg acggagatgg tgccgccgac ctctgacgtg
     1261 agtatctcgt tccagttcgc gtcggggaag tcgcccggct taggcggcgg ctgcgcgcac
     1321 gactcgcagg gcgggacgaa cggcctggag gacagcgtct ccgtaatcgt catcttcgac
     1381 cacgactcga ttgtgaggtc gcccgtgcgg tacggggcga ccagggacgg ctgcacggtg
     1441 atgaccgaat acctcgccat cgcgtcgtcg agcgtcgtca cgtctatgtc gtcaatcgtg
     1501 gtcgagatct tcaccgccgg ctggccgtcg ctgatggcgc gctgcgcgag cccctcgaag
     1561 gtgaagttaa atccggggtc ttgtccctgc gcttgcgccg gccgtaggcg agggcttccg
     1621 ggcatcgcga agaagattgt ccaagccgtc ccaagcacgg ctgccacggc caagagcgta
     1681 agcctggttt tcatctgcgg actccttgag cggcctgttt tgaggcgcgc gccgtcagag
     1741 gaagagacac ctccggccgg aaggctcggg ccctgtctcg ccgcctctcg ccaacgtcgg
     1801 ggccttcggc cccggctatt cgtgttgaac cccttgtgaa gttagtggtc ttgacgacca
     1861 gtcaaggtag taagcctgtt aagggaggcg gttgcgagcc ctcttccgaa agccgcggct
     1921 gcgaggtgcc gtttgagatg agtgctctcg accgtccgac tgaatactta gtccgcgact
     1981 aggtctcagt cttgtgtgcg tcgggttgct tcgtgatggg gtgttgaggg atggcgggag
     2041 agtaggggaa gtcctaaaac ctgtcaatag ggtgaggcga actacaagcg gtttgtaata
     2101 gcggcgcaac tatcgtatga aaattcatgg cgtcgtaaga ctatcccatc aatgcccgat
     2161 tcacgcggcc gcgcgccgtc accgaaaatt catcgcatcg caacatgacg cggagtgcgc
     2221 gccctgcggc cgacctcctt gacagacatg gcccgcagtg attcaataac cgccaaagcg
     2281 tggtgagtta aggcgacttg cggccacgta aaataaaccg ctaaacagct cggcgcgcgc
     2341 cgacgcggcc gtccaaaaca ggcttccccg tgagaggccc cgcgttgttt agcgcgggga
     2401 aatttttttg tatatggccg acttccttaa aaccttaaac gagcgcgtcg tcgtgtttga
     2461 cggcgcgatg gggacgaacc ttcacgcgca ggacctgagc gtggacgact tcggcgggcc
     2521 gcagttcgag ggctgccccg agtaccttct ggtgacgaag ccggaggcgg tcgagcgtgt
     2581 tcacgccgac ttcctcgccg ccggctgcga cgtgatcgag accgactcgt tcggcgccac
     2641 ggcaatcgtc ctggccgagt accagatcgc gcacatggcc tacgagctga acgtgcgcgc
     2701 cgcccagctc gcgcgacggg tcgccgccga cttctccacg cgcgagcgcc cgcggtgggt
     2761 cgcgggctcg atggggccgg ggacgaagct cccgacgctc gggcaggtct ctttcctcga
     2821 agcccgcgac gcctacggcg agcaggcgcg gggcctcctc gacggcggcg cagacctcct
     2881 aatcgtcgag acctgccagg acatgctgca agtcaaggcc gcgctcgcag gcatattccg
     2941 cgagttcgcc gcgtcgcgcc gccgcgtccc catcatcgcg caggtgacga tagagcagca
     3001 ggggacgatg ctgctcggga cagagatagc cgccgcgctc acggccgtcg agcccttccc
     3061 gatagacgtg ttcggcatga actgcgcgac ggggccgaag cagatggcgg agaacgtgcg
     3121 cttcctctgc cagaactccc gcttccccgt ctcggtcatc ccgaacgcgg gcatccccga
     3181 caacgtcggc ggccatgccg tcttccgcga gacgcccgag tcgctggccg cagacctctc
     3241 ccacttcgcg cgcgacctcg gagtctcaat cgtcggcggc tgctgcggca cgacgcccgc
     3301 gcacataaag gccgtggtgg aggcggtcgg cggcctcacg ccgctcaggc gcgaggcgcc
     3361 gcacgtgccg gcctgctctt cgctctacgt gcagcagccc taccgccagg acacctcctt
     3421 cctgatcgtc ggcgagcgcg tcaacgcctc gggctcgaag aggatgagag acttgctgaa
     3481 ggaagaggac tgggacgggc tcgtctcgct cgcccgcgag caggagcgcg agggcgcgca
     3541 cgtcctcgac gtgaacgttg actacgtcgg ccgcgacggc gtgcgcgaca tgcacgagct
     3601 cgcgtcgcgg ctggtgacga acgtgcgcgt gcctctcatg ctcgactcga ccgagtggga
     3661 gaagatggag gcgggccttc agcactcggg cggcaagtgc atactgaact cgaccaacta
     3721 cgaggacggc gagcctcgct tccgaaaggt catcgggctc gcgaaggagt acggcgcggg
     3781 cgtcgtcgtc ggcacgattg acgaggaggg gatggcgcgc gaggctggca agaagttcga
     3841 gattgcgcgc cgggcttacg agcaggccac cggggagctc ggcttccccg cctccgacat
     3901 cttcttcgac ccgctggcgc t
//
LOCUS       DASPKR010000628         2146 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_487713, whole genome shotgun sequence.
ACCESSION   DASPKR010000628 DASPKR010000000
VERSION     DASPKR010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2146)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487713"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..194)
                     /locus_tag="VD968_16805"
     CDS             complement(<1..194)
                     /locus_tag="VD968_16805"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF017864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HYE16101.1"
                     /translation="MREGGGAPHAAPLVEVRRGRVVESRHRGHVIAVDGDGRVLASLG
                     EPETVTFLRSSAKPHQAVPVV"
     gene            complement(359..961)
                     /locus_tag="VD968_16810"
     CDS             complement(359..961)
                     /locus_tag="VD968_16810"
                     /inference="COORDINATES: protein motif:HMM:NF018437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D domain-containing protein"
                     /protein_id="HYE16102.1"
                     /translation="MSKPLLGGSAAAAVAVLSASLLFYAQPSVAEALAVASQDSHQTG
                     ATQQQEVTTPRPETADGDETGAKLKEESSRVENAGPVAPAEAAVVESPSRQFTATAYA
                     LRGRTASGRPVARGIIAADRRVLPIGTRVRIEAGAYSGEYLVADTGGLVRGRKIDIWV
                     PSTREAMRFGRRSVKLTVLTRTRPRATTPARPRRAGSTTE"
     gene            complement(1243..1992)
                     /gene="dapF"
                     /locus_tag="VD968_16815"
                     /pseudo
     CDS             complement(1243..1992)
                     /gene="dapF"
                     /locus_tag="VD968_16815"
                     /inference="COORDINATES: protein motif:HMM:TIGR00652.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
BASE COUNT          328 a          749 c          718 g          351 t
ORIGIN      
        1 acgacgggga cggcctggtg cggcttggcc gatgagcgca ggaacgtgac cgtctccggc
       61 tcgccgaggg aggcgagcac gcggccgtcg ccgtcaacgg ctatgacgtg gcccctgtgg
      121 cgcgactcga ccacgcggcc gcggcggact tcgacgagcg gcgccgcgtg cggggcgccg
      181 cctccctctc tcacatcgct caagagtttt acctgaaggg gtttatgcga aatcggcggc
      241 aatcttaccc acgcacgcgc ccgtaccgca acccgccgtc cccttagaaa gcgcgaaggc
      301 cgctgccttt ttcaaggtca gcggccttcc tgtcccggtc gggattaggt tgtaaggatt
      361 attcagttgt actgcccgcg cgacgcggcc gggccggtgt cgttgcgcgg ggcctcgtgc
      421 gggtgaggac tgtcagcttc acggagcggc ggccgaagcg catggcttcg cgcgtcgagg
      481 gaacccagat gtcaatcttt ctcccccgca caaggccgcc ggtgtcggcc acaaggtact
      541 cgccgctgta agcgcccgcc tcgatccgca cgcgcgtccc gatggggagc actcggcggt
      601 cggcggcgat gatgccgcgg gcgacgggcc ggccgcttgc cgtccgtccg cgcagcgcgt
      661 aggccgtggc cgtgaactgc ctcgatgggc tttccacgac cgccgcctcg gcgggcgcga
      721 ccggcccggc attttcaacc ctgcttgatt cttccttgag tttggcgccc gtttcgtccc
      781 cgtcggccgt ctccggccgg ggcgtcgtta cttcctgttg ctgtgtggcg cctgtctgat
      841 gactgtcctg cgaggccact gcgagggctt ctgctaccga aggctgcgca taaaagagca
      901 gcgaagcgga gaggactgcg acggccgcgg ccgcgctccc ccccagaagg ggtttactca
      961 ttcggttctc ctcccgatag tttgggcctg ttcggcggcg cgcgagtacg ggcgttccaa
     1021 ttcccttcct cgacctccgg ctctaggagt tgggagtcag ccggagtggg gaccacatcc
     1081 ttgatgcgga gcgccgaaag gcgaaagcca aaaaagaatg acaagcgaac ttatcgtccg
     1141 cttgtcacgg cctaaatatt accacttgtt acgaaactgt gtccagccaa cagaaaggtg
     1201 agacaagggg cggccgcggg acctcaagct ccgagcccgg ccttatggcg ccggcgctcc
     1261 cgccagccac tcgccctgat agacgacctt ggccgtgccc gtgaggagga cttcgccgtc
     1321 gtcgcgtcgg aagacttcga ggaggccgcc gggcatgtgg acgccgacgc gcggccccgt
     1381 tcggccgccg agcatggagg ccacggccgc ggcgcaggcc cccgtccccg aagagagcgt
     1441 ctctccggcc ccccgctccc agacgcgggc ctctatgttc tcgcggtcta gggcgcgcac
     1501 gaactcgacg ttcgtgcgct cggggaaagc cgcgtggcgc tctatctctc gcccgagccg
     1561 ccgccagtcc gtgccgtcga ggtcgtccac gaagacgcag cagttcgggt tgcacatctg
     1621 caaggctgtg atgcggacgg tctcgccgcc cgcgagcgag agcgggaagt cgcgcacctc
     1681 ggcgagcggc tcgggcgtaa ggattgggac ggaggcgctg tcgaagcggg gccggccaat
     1741 ctcggcctcg aagcggaatt cgccctcgcg ggggcgcccg cgcaggcggt agagcttcgt
     1801 cccggcccgc gtggcgaagc gcagctcctc gccccgccag agccccttga aatggaggca
     1861 cgcggccgcg cagcgcgagc cgttgccgct catggcggcc tcgccgccgt ccgggttaaa
     1921 tatccgcagg cggaagtctg ctcccccgtc ctcgacccgc tcgacgactg ccacgccgtc
     1981 cgcgcccgcc ccgaaatggc ggtctcacac gcgccgcacg aactcgacga aggggttaaa
     2041 ctcgcccagc cgctcgaagc cgccccgcca ccccgcgggc gcgagctcgc ccgcctcgaa
     2101 cacgaggtag tcgttcccgt acccgtggaa cttgacgaag cgcatt
//
LOCUS       DASPKR010000629         2849 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_354503, whole genome shotgun sequence.
ACCESSION   DASPKR010000629 DASPKR010000000
VERSION     DASPKR010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2849)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2849
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354503"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..778
                     /locus_tag="VD968_16820"
     CDS             <1..778
                     /locus_tag="VD968_16820"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HYE16103.1"
                     /translation="VAPELVSLLGGAYLDGLQRAGVAGCGKHFPGLGGSKVDSHRRLP
                     VITHTWDEIFDRDLVPFMDLMFHRPGERMKAVMVSHAAFPDMSEFLQAWFRREGDAPT
                     IEGLHRFPATISGNVLMRLLRVILKFDGLVITDDMEMGAVVQTLSVEEASLRAVEAGS
                     DMVLICEHESNVVAARDRLAEAVREGRLSERFLAAAERRMDAVLQIAGEPEQYDPEEF
                     AAVSRGIAQLKQQLKAAEETGEYTPLYGTEGGGTRRSSNF"
     gene            812..2323
                     /locus_tag="VD968_16825"
     CDS             812..2323
                     /locus_tag="VD968_16825"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYE16104.1"
                     /translation="MHRLSISLLTLTLFLTPALAAGQRARQRRPARQRQPQVNRPAPP
                     PAPAQAEAAPPAPSPSPSPTPPLPPPRLRAEDYRERAARIIGAALTSDTAYRRLSYLS
                     DRIGHRLSGSESLERAIEWALAEMRRDGLEGVRAEKVMVPHWSRGEESLEVREPVRRE
                     LALLGLGGSVGTPAGGLTAEAVVVRGFDELDALGERVRGKVVVYNVPFTTYGATVQYR
                     GSGASRAAKHGAVAALIRSVTPVSLQTPHTGALRYDEKQPKIPAAAITIEGAELLQRM
                     QDRGERPVVRLKMGAKFLPDAESANVIAELRGSEKPEEVVVVSGHFDSWDVGQGAHDD
                     GGGCIVAWETVRLLKQLGLRPRRTIRAVLYTNEENGLRGGNAYRDAHRAELANHVLAI
                     ESDSGVYRATGFGLDDAAPPQARADVREIARLLAGIRADNVAADGGGADIGPIMREGV
                     LGMSLNVDGTHYFDIHHTHADTMDKVDPQELASCVAAMAVMAYVAADAPERLK"
     gene            complement(2412..>2849)
                     /locus_tag="VD968_16830"
     CDS             complement(2412..>2849)
                     /locus_tag="VD968_16830"
                     /inference="COORDINATES: protein motif:HMM:NF038114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PxKF domain-containing protein"
                     /protein_id="HYE16105.1"
                     /translation="FPVGTTTVSVTATDAAGNRATCSFKVTITYNFSGFFPPVENPPT
                     YNTVKAGTSVPVWFSLGGRMGLDIFTPGWPVSGVVACDSSEEPAVAEPTLQGTTNTPS
                     YHTVNNRYKYLWKTRAAWAGTCRQFVMRLKDGSTHRANFKFTK"
BASE COUNT          437 a          993 c          986 g          433 t
ORIGIN      
        1 cgtggcgccc gagttggtct cgctcctcgg cggcgcgtac ctcgacggcc tccagcgcgc
       61 gggcgtggcc ggctgcggca agcacttccc cggcctcggc ggctcgaagg ttgactcgca
      121 ccggcgcctg cccgtcatca ctcacacgtg ggatgagatt ttcgaccgcg acctcgtccc
      181 cttcatggac ttgatgttcc accgcccagg cgagcgcatg aaggcagtga tggtgagcca
      241 cgccgccttc cccgacatgt cggagttcct gcaggcgtgg ttccgccgcg agggtgacgc
      301 gccgaccatc gagggcctgc accgcttccc cgccaccatt agcggcaacg tcttgatgcg
      361 cctcctgcgc gtgatactca agttcgacgg gctggtgatt acggacgaca tggagatggg
      421 cgccgtcgtg cagacgctct cggtagagga ggcttctttg cgggcggtcg aggccggctc
      481 cgacatggtg ctcatctgcg agcacgagtc gaacgtcgtc gccgcgcgcg accgcctcgc
      541 cgaggccgtc cgcgaaggcc gtctgagcga gcgtttcctc gccgccgccg agcgccgtat
      601 ggacgccgtt ctacagatag ccggcgagcc cgagcagtac gaccccgagg agttcgccgc
      661 cgtctcgcgc ggcatcgccc aactcaagca acagctcaag gcggccgagg agaccggcga
      721 gtacacgcct ctctacggca ccgaaggggg cggcacgcgc cgctcatcca acttctgatt
      781 gcgggctccc gcaactcttc acggaggcat cgtgcatcgt ctctcgatct ctcttctcac
      841 gctgactctc tttctgacgc ccgcgctcgc cgcggggcag cgcgcgcggc agaggcggcc
      901 ggcccgtcag cgacagccgc aggtcaaccg gcccgcgccg ccccccgccc ccgcgcaagc
      961 ggaggccgcg ccgcccgcgc cgagcccgag cccgagccct acgcccccgc tgccgccccc
     1021 gcgcctgcgc gccgaagact accgcgagcg tgccgcgcgc atcatcggcg cggcgttgac
     1081 gagcgacacc gcgtatcgcc gtctgtcgta cctctccgac cgcataggcc accgccttag
     1141 cggctcggag tcgctcgaac gggcgataga atgggcgctc gcggagatgc ggcgcgacgg
     1201 gctcgaaggc gtgcgcgccg agaaggtgat ggtgccgcac tggtctcgcg gcgaggagag
     1261 ccttgaggtg agggagccgg tcaggcgcga gcttgcgctc ttaggtcttg gcggtagcgt
     1321 cggcacgccc gcgggcggct tgacggccga ggccgtggtc gtccgcggct tcgacgagct
     1381 cgacgcttta ggagagcgcg tgcgcggaaa ggtcgtcgtc tataacgtgc cgttcacgac
     1441 ctacggcgcg accgtgcagt accgcggctc gggcgcctcg cgcgccgcga agcacggcgc
     1501 ggtcgcggcg ctcatccgct ccgtaactcc cgtcagcctc cagacgccgc acaccggcgc
     1561 actccggtac gacgagaagc agccgaagat tccggccgcc gccataacca tcgagggcgc
     1621 cgagcttttg cagcgcatgc aggacagggg cgagcgcccc gtcgtgcgcc tgaagatggg
     1681 cgcgaagttt ctgccggacg ccgagtcggc caacgtcata gcggagctac gggggtctga
     1741 aaagcccgag gaggtcgtcg tcgtgagcgg ccacttcgac tcctgggatg tgggccaggg
     1801 cgcgcatgac gacggcggcg gctgcatagt cgcgtgggag accgtgcggc tcctgaagca
     1861 gttgggcctg cggccgcgcc ggactatacg cgccgtgctc tacacgaacg aggagaacgg
     1921 gctgcgcggc ggcaacgcct accgagacgc gcaccgcgcc gagctcgcca accacgtgct
     1981 cgcaatcgag tccgattcgg gcgtctatcg cgccacgggc ttcggcctcg acgacgcggc
     2041 gcccccgcag gcgcgcgccg acgtgcgcga gatagcacgg ctgctcgcgg ggatacgcgc
     2101 cgacaacgtc gcggccgacg gcggcggcgc agacatcggc cccatcatgc gagagggcgt
     2161 tctggggatg tcgctcaacg tggacggcac gcactacttc gacatacacc acacgcacgc
     2221 cgacacgatg gacaaggttg acccgcagga gctcgcctcc tgcgtcgccg cgatggccgt
     2281 catggcctac gtcgcagccg acgcgcccga gcgcctgaag taggcgcggg gccgccgggc
     2341 gaaagacggg agggccgctg tattgaacac agcggccctc ccgtctttcg cccggctagc
     2401 ggcgcgcgcg cctatttcgt gaatttgaag ttggcgcggt gggtgctgcc gtccttaagc
     2461 cgcatgacga actggcggca agtccccgcc cacgcggccc tcgtcttcca gaggtacttg
     2521 tagcggttgt tgaccgtgtg gtagctcggc gtgttcgtcg tgccttgcag cgtcggctcg
     2581 gcgacggccg gctcctctga cgagtcgcaa gcgaccacgc ccgagacggg ccagcccggc
     2641 gtgaagatgt cgagccccat cctgcctccc aggctaaacc agacggggac gctcgtgccg
     2701 gccttcaccg tgttgtaggt cggcgggttc tcgacgggcg ggaagaagcc cgagaagttg
     2761 taggtgatcg tcaccttgaa ggagcacgtg gcgcggttgc cggcagcgtc cgtagccgtg
     2821 acgctcacgg tggtcgtgcc gacggggaa
//
LOCUS       DASPKR010000630         7677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_880628, whole genome shotgun sequence.
ACCESSION   DASPKR010000630 DASPKR010000000
VERSION     DASPKR010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7677)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7677
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_880628"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..800)
                     /locus_tag="VD968_16835"
     CDS             complement(<1..800)
                     /locus_tag="VD968_16835"
                     /inference="COORDINATES: protein motif:HMM:NF037611.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16106.1"
                     /translation="MGKSITFIRARVGLLLCLLFAFQPAALREALAQVSAGAPLATYV
                     DPFVGVDGGGNTVPGAKVPFGFANPSPDTEPNPDPNSWATNGYESDRDIIGFSQTHVS
                     GTGGEGKYGNFRVTPQAGEARPKDLASPKSDERAEPGYYAVTLTKPGVRAELTATRLV
                     AVHRYTFPARSRAHLVIDAGSVVFTGGGAGRRQRPIASHARVVAPDRVEGMGSFIGGW
                     NPSPYTLYFSAELSRPSAAHGAWRGDEVYAGARSVAGEQAGAGLYLTF"
     gene            complement(800..2803)
                     /locus_tag="VD968_16840"
     CDS             complement(800..2803)
                     /locus_tag="VD968_16840"
                     /inference="COORDINATES: protein motif:HMM:NF022623.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 172 protein"
                     /protein_id="HYE16107.1"
                     /translation="MKIILASLVIVSSAAFAARARQPAPRAAAPPSPGVEELHRLDAL
                     ARFRSSVKVGSVSSYDRTGGNDDGFRGTHSFVRKEPGGLVIADLKGPGVIYRVWTPTP
                     SDDIVEFYFDGEARPRLSLPFADLFSGKRYPFLHPVAGIGAGGFYSYVPLPYKESVKV
                     VVRAERFYFYQINYATYPAGARVESYAADPPADIRAHLERARKLWASPGEDISAAVAA
                     GKGRVLSRAFRGSLAPGRPLTLFASQRPGRVVAVKLGPASAFAGKARDIVLRAYWDGE
                     REPAINCPVGDLFGYSWGEPATKSLLLGTSNETNYIYLPMPFDRSARIELVSERRGGA
                     AVPVEGEVKFTNAARAPDEGRLYALWRRERPTIEGRPYTFVKAEGRGHVVGFILQAQG
                     AEPGAIPEFFEGDDQTTIDGELVVHGTGSEDFFNGGWYDVPGRWEDRVSLPLSGSLDF
                     KRHLGRTGGYRFLIGDAYAFRRNILSTIEHGPSGNKFPADYASVVFLYAERNPLAGHT
                     LPPAAERRVADPSRVVFTPGWTTPVHAFSWSNAVLLKADDRVGGEQLRHLSLRAEGRE
                     VFGPHYISFVCEMPAAGRYRVLLQAIEGPAQGVVQLFKNEVGVGEAADLYAPERRKSR
                     EIPMGELELREGDNRVMFKLVGKHEKSSGFGLDIYRIIFERAE"
     gene            3108..7205
                     /locus_tag="VD968_16845"
     CDS             3108..7205
                     /locus_tag="VD968_16845"
                     /inference="COORDINATES: protein motif:HMM:NF014214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005615 - extracellular space [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M36 family metallopeptidase"
                     /protein_id="HYE16108.1"
                     /translation="MARKTVIRHLRGLQNVRTLATIILSALTLAVTLAPREARAQAHI
                     LDVHSALPDIDKRGTTAVAPTAAQQAIVSGMGAKVSWNEFGTPKTLSKDGQFLATGLR
                     GETAVAAARAWIDANKALYRLSSIDSLELYGDSKMPYSNGHAVHFKQTFGGLTAAQGG
                     LITVGITGTPEAGWKVAYVSSSLTGDTGLSGSARLSPQEAWVRAATDLGRLASLAGIT
                     AVAAEREWTTFRVEGFNDVQRVRLVAVPTPGNGVRPAFETLVLDNKGGELIGYKYMID
                     AETGAVLLRENLVHQLAQEVPSQQTTPFNGAYDVQGTVPNRTGTCGSHDFNVPAGQRT
                     LVAAAHATVAANDIFIDIFYQGQMVAHQDTGTSPEGVTYAPADGVPAGTYTVKVCPYL
                     GSLPGAGPAPHAQPYSYTGAFTYTTQNTNPPSLYPPKWKVFPASPLPPELSGYPWNVP
                     DTDIRKLWCWESVVNGVAVPGCEDAVKNLASRTPWDYDPNLNAPTFTTRGNNAISSES
                     WTGPLSPGAFGHMPASPSRDYTFQWTNDWYKSRCNPTNFVPGVSNDISAAVTNLFAMH
                     NRMHDWAYNLGFTEENWNAQQSNFGNGGLGGDPILGQSQAGGMDGGYPAYLGRDNANM
                     RTLPDGVPSITNMYLWQPIRGSFYAPCVDGDYDMSVIGHEYGHMIENRMIGKGANRSG
                     HHAGAMGESNGDLNGVEILNEYGFVPVADENPFTMGAFATGDKRRGIRNYAMNQSPLN
                     FSNMGYDPFFASGGTPVHADGEIWSATNFDIRQALVEKYNATHPASDAAMQRQCADGK
                     KAPEDCPGNRRWVQIMYDAYLLMPTAPTMLQARDAYLAADMMRFGGANQDELWLAFAR
                     RGFGAGAATSNAHASSDTDPKPDFASPRHDNATVTFKAVAQDEGSTPVTGARIFVGHY
                     EARVSPVADTNPQTNATGAGVNNLDDVAQFVPGTYEFVVHAPGYGHFRFTRRFTAGSS
                     HQVTISMPTNLASTTKGATAAGGGNVAAMIDDTETTTWTAPGTPSAQQVTVDLAGTAP
                     KTINRVQVSSMIQHGQNRFTALRQFRVDVSTDGTNFTPAYTSPADAFPGSSPRPGVPD
                     MIVRSFSFPAVQATHARLVVLHTQCTGQTQFHGVQDNDPLNATDCRGEGEPAGTDPAG
                     PSGQTGAAQNTNTRAAEFQVFESEGFAAAGDRVTDLNISTLVNGCVPELQGKVTLDGP
                     APAGGTVVTITENHPAAEFPTTVLVPEGHTSRSFKFTVSPVTTVTKGDVTATAGGGTI
                     TRTLTVRPIRVDTLTLNPNRVKGGNSSTGTVTLECGAAPGDITVALESSAPSVASVPA
                     SVVIPAGSQSATFTITTKPVNAAKTIGIKATAGGLTISSPLVVEP"
     gene            7309..>7677
                     /locus_tag="VD968_16850"
     CDS             7309..>7677
                     /locus_tag="VD968_16850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16109.1"
                     /translation="MRLRRSYRRASLAAMMAVLFAAALMNAGSGSTQTVARDLWRDIA
                     EGSILGAGARVVVPEAYRTVRLDGGALSEVLSAAPLEFTAAARQSQAVLSVPMPDGSF
                     SRFRVEESPIMEPALAAKHPE"
BASE COUNT         1310 a         2717 c         2565 g         1085 t
ORIGIN      
        1 tcgaaggtga ggtagaggcc ggcgcccgcc tgctcgcccg cgaccgagcg cgcgccggca
       61 tacacttcgt cgccgcgcca cgcgccgtgc gcggcggagg ggcgcgagag ctcggccgag
      121 aagtagaggg tgtagggcga agggttccag ccgcctatga agctgcccat gccctctacg
      181 cggtcgggcg ccacgacgcg cgcgtggctc gcgatggggc gctgacggcg gcccgccccg
      241 ccgccagtga agacgaccga gcctgcgtca atgactaaat gcgcgcgcga ccgcgcaggg
      301 aaggtgtagc ggtggacggc gacgaggcgc gtggccgtca gctccgcgcg cacgcccggc
      361 ttcgtgagcg tgacggcgta gtagccgggc tcggcccgct cgtcactttt cggcgaggcg
      421 aggtctttgg gccgggcctc gcccgcctgc ggcgtgacgc ggaagttgcc gtacttgccc
      481 tcgccgcccg tcccggaaac gtgcgtctgc gaaaagccta ttatgtccct gtcagattcg
      541 tagccgttcg tggcccaact gttcgggtcg gggttgggct cggtgtcggg gctcgggttc
      601 gcgaagccga aagggacttt agcgccgggg acggtgttgc ccccgccgtc aacgccgacg
      661 aacgggtcaa cgtaggtggc gagcggcgcc ccggcactaa cttgcgcgag cgcctcgcgg
      721 agcgcggcgg gctggaaggc gaatagcagg cacaggagga gcccaacccg cgcgcggatg
      781 aaagtgatgc tctttcccat cactcggcgc gctcgaagat tatgcggtag atgtcgaggc
      841 cgaagcccga agacttttcg tgcttgccga cgagcttgaa catcacgcgg ttgtcgccct
      901 ccctgagctc aagctcgccc atcggaatct cgcggctctt cctccgctcc ggcgcgtaga
      961 ggtctgccgc ctcccctacc ccgacctcgt ttttgaagag ctggacgacg ccctgcgccg
     1021 ggccttcgat tgcctgaagc agcacgcgat accttccggc cgcaggcatc tcgcagacga
     1081 aagagatgta gtgagggccg aagacttcgc gcccctcggc cctcaaagag aggtggcgga
     1141 gctgctcgcc gccgacgcgg tcgtccgcct tcaggagcac ggcgttcgac caggagaagg
     1201 cgtggacggg ggtcgtccag ccgggcgtga agactacgcg cgaggggtct gcgactcgcc
     1261 tttcggcggc gggcgggagt gtgtggcccg cgagcgggtt gcgctccgcg tagaggaaga
     1321 cgaccgaggc gtagtcggcc gggaacttgt tgcccgaggg gccgtgctcg atggtcgaga
     1381 gaatgtttcg tctgaaggcg tatgcgtcgc cgatgaggaa gcggtagccg cccgtgcggc
     1441 cgaggtggcg cttgaagtcg aggctgccgc tcaacggcag ggagactcgg tcctcccagc
     1501 gccccggcac gtcgtaccag ccgccgttga agaagtcctc cgagccggtg ccgtggacga
     1561 cgagctcgcc gtcaatcgtc gtctggtcgt cgccctcgaa gaactcgggt atggcgcccg
     1621 gctcggcgcc ctgagcctgt aggatgaagc cgacgacgtg gccgcgcccc tcggccttga
     1681 cgaaggtgta ggggcgtccc tcaatcgtcg ggcgctcgcg ccgccagagc gcgtagagcc
     1741 tgccctcgtc gggcgcgcgc gcggcgttcg tgaacttgac ctctccctcg acggggacgg
     1801 ccgcgccgcc gcgcctctca gacacgagct ctatcctcgc cgaacggtcg aagggcatcg
     1861 gcaggtagat gtagttcgtc tcattggacg tgccgagcag cagagacttc gtggccggct
     1921 cgccccacga gtagccgaag aggtcgccga cggggcagtt aatcgccggc tctcgctcgc
     1981 cgtcccagta ggcccggagc actatgtcgc gcgccttgcc ggcgaaggcc gaggcggggc
     2041 cgagcttgac ggcgacgacg cggcccgggc gctgtgacgc gaagagcgtc aacggccgcc
     2101 ccggcgcgag cgaccccctg aaggcgcgcg aaaggactct ccccttgccc gccgcgaccg
     2161 ccgcgcttat gtcttcgccg ggcgaggccc agagctttcg cgccctctca agatgcgccc
     2221 tgatatcggc cggcgggtcg gcggcgtagg actctacgcg cgcgccggcc gggtaggtgg
     2281 cgtagttgat ctggtagaag taaaaccgct cggcgcgcac cacgaccttg accgactctt
     2341 tgtagggcag aggcacgtag gagtaaaacc cgcccgcgcc tatgccggcg acggggtgca
     2401 ggaacgggta gcgcttgccc gagaagaggt cagcgaaggg cagagacagt cgcggtcggg
     2461 cctcgccgtc gaagtagaac tctacgatgt catcgctcgg cgtgggcgtc cagacgcggt
     2521 agatgacgcc cggccccttg aggtctgcga tgacgagccc gcccggctcc ttccgcacga
     2581 aagagtgagt gccgcggaag ccgtcgtcgt taccgcccgt gcggtcgtag ctggaaacgc
     2641 tcccgacctt gaccgacgaa cggaagcgcg cgagcgcgtc gagcctgtgc agctcttcga
     2701 cgccgggcga cggcggcgcg gcggcgcgcg gggccggctg ccgggcgcgc gccgcgaagg
     2761 cggccgacga gacgataacg agcgacgcga gaatgatttt catgcagagc ttttaaagcg
     2821 tttaataccc tcgccgcgcc ggcaggtcaa gcgttttctt cgcccggcgc ccgggcggct
     2881 caaggattcc tcaaccttcc tgcctatcct cctaacatcc tgaaaagctg acagttcgcg
     2941 gcatcgtccg ggagggcgcg cacgcgcgcg ggcctctcaa gaaaaactca agcggcgccg
     3001 ggtaagcttc gggcctactt aagaccgcgt ggtccaaaga cgcttaagac aaacgcccga
     3061 gcggcttccg aataatgttc ttccctttga aaggagcgac gacggagatg gctagaaaga
     3121 cagtcatcag gcacctgcgg ggcctgcaaa acgttcgaac cctcgcgacg ataatacttt
     3181 cggcgctgac gctggcggta acactcgcgc cccgcgaggc ccgcgcccag gcccacatac
     3241 tcgacgttca ctcggccctg cccgacatag acaagcgtgg aacgacggcg gtggcgccga
     3301 cggccgcgca gcaggcgatc gtctcgggca tgggcgccaa ggtgtcgtgg aacgagttcg
     3361 ggacgccgaa gacgctcagc aaggacggcc agttcctcgc tacgggcctg cgcggcgaga
     3421 cggccgtcgc ggccgcgcgc gcgtggatcg acgccaacaa ggcgctctac cggctctcct
     3481 ccatcgactc gcttgagctt tacggcgact ccaagatgcc gtacagcaac ggccacgccg
     3541 tgcacttcaa gcagaccttc ggcggcctga cggccgcgca gggcgggcta atcacggtcg
     3601 gcatcacggg cacgcccgag gccggctgga aggtcgccta cgtctcctcc tcgctcacgg
     3661 gcgacacggg cctctcgggc tcggcgcgcc tctcgcccca ggaggcgtgg gtccgcgccg
     3721 ccaccgacct cggccgcctg gcctcgctcg ccggcatcac ggccgtcgcg gccgagcgcg
     3781 agtggacgac cttcagggtc gagggcttta acgacgtgca gcgcgtgcgc ctcgtcgccg
     3841 tcccgacgcc ggggaacggc gtccggcccg cgttcgagac gctagtgctc gacaacaagg
     3901 gcggcgagct catcggctac aagtacatga tcgacgccga gacgggcgcc gtgctgctgc
     3961 gcgagaacct cgtgcaccag ctcgcgcagg aagtcccgtc gcagcagacg acgccgttca
     4021 acggcgccta cgacgtacag gggacggtgc cgaaccgcac cggcacctgc ggctcgcacg
     4081 acttcaacgt cccggccggc cagaggacgc tcgtcgcggc cgcgcacgcc accgtcgccg
     4141 ccaacgacat cttcattgac atcttctacc agggccagat ggtcgcgcat caggacacgg
     4201 gcacgagccc cgagggcgtg acctacgcgc ccgccgacgg cgttcccgcc ggcacctaca
     4261 ccgtgaaggt ctgcccgtac ctggggagcc tgcctggcgc cggccccgcc ccgcacgcgc
     4321 agccctacag ctacaccggc gcgttcactt acaccacgca gaacacgaac ccgccgtcgc
     4381 tctacccgcc gaagtggaag gtcttcccgg cgagccctct gccgccggag ctgagcggct
     4441 acccgtggaa cgtccccgac accgacattc gcaagctctg gtgctgggag tcggtcgtca
     4501 acggcgtggc cgtgccgggc tgcgaggacg cggtcaagaa tctggcctcg cgcacgccct
     4561 gggactacga cccgaacctg aacgcgccga ccttcacgac gcgcggcaac aacgccatat
     4621 cgtccgagtc gtggacgggg ccgctctcgc cgggcgcctt cggccacatg ccggccagcc
     4681 cgagccgcga ctacaccttc cagtggacta acgactggta caagagccgc tgcaacccga
     4741 cgaacttcgt ccccggcgtc tcgaacgaca tctcggcggc ggtcacgaac ctcttcgcca
     4801 tgcacaaccg catgcacgac tgggcgtaca acctcgggtt caccgaggag aactggaacg
     4861 cgcagcagag caacttcggc aacggcggct tgggcggcga ccccatcctc ggccagtcgc
     4921 aggcgggcgg catggacggc ggctacccgg cctacctcgg ccgcgacaac gcgaacatga
     4981 ggacgctgcc ggacggcgtc ccctccatca cgaacatgta cctgtggcag cccatacgcg
     5041 gctccttcta cgcgccgtgc gttgacggcg actacgacat gtcggtcatc ggccacgagt
     5101 acggccacat gatcgagaac cgcatgatag gcaagggcgc caaccgcagc ggccaccacg
     5161 ccggcgcgat gggcgagtcc aacggcgact tgaacggcgt cgagattctc aacgagtacg
     5221 gcttcgtccc cgtcgccgac gagaacccct tcaccatggg cgccttcgcc accggcgaca
     5281 agaggcgcgg catccgcaac tacgcgatga accagagccc gctcaacttc agcaacatgg
     5341 gctacgaccc gttcttcgcc tccggcggga cgcccgtcca cgccgacggc gagatttgga
     5401 gcgccacgaa cttcgacatc aggcaggcgc tcgtcgagaa gtacaacgcg acgcacccgg
     5461 cctcggacgc cgccatgcag cgccagtgcg ccgacggcaa gaaggcgccc gaggactgcc
     5521 ccggcaaccg ccgctgggtt cagataatgt acgacgccta cctgctgatg ccgaccgcgc
     5581 ccacgatgct tcaggcgcgc gacgcctacc tcgcggccga catgatgcgc ttcggcggcg
     5641 ccaaccagga cgagctgtgg ctggcgttcg cgcggcgcgg cttcggcgcc ggcgcggcca
     5701 cctcgaacgc ccacgcgtcg agcgacaccg acccgaagcc ggacttcgcc tcgccccgcc
     5761 acgataacgc gaccgtcacc ttcaaggccg tcgcgcagga cgagggcagc accccggtaa
     5821 cgggcgctcg catattcgtc ggccactacg aggcgcgcgt ctcgcccgtc gccgacacca
     5881 acccgcagac gaacgccacg ggcgccggcg tcaacaacct cgacgacgtg gcgcagttcg
     5941 tccccggcac ctacgagttc gtggtgcacg cgcccggcta cggccacttc cgcttcacgc
     6001 ggaggttcac tgccggctcg tcgcaccagg tgaccatctc gatgccgacg aacctcgcgt
     6061 ccacgacgaa gggcgcgacg gcagcaggcg gcggcaacgt cgccgccatg attgacgaca
     6121 ccgagacgac cacgtggacc gcgcccggca cgccctcggc gcagcaggta acggttgacc
     6181 tcgcgggcac ggccccgaag accatcaacc gcgtgcaggt cagctctatg atccagcacg
     6241 gccagaaccg cttcacggcg ctaaggcagt tccgcgttga cgtctcgacc gacggcacga
     6301 acttcacgcc ggcttacacg agcccggccg acgccttccc cggcagctcg ccgcggcccg
     6361 gcgtccctga catgatcgtc cgctccttct cgttcccggc ggtgcaggcg acgcacgccc
     6421 gcctcgtcgt gctccacacc cagtgcacgg gccagacgca gttccacggc gtgcaggaca
     6481 acgacccgct caacgcgacc gactgccgcg gcgagggcga gccggccggc accgacccgg
     6541 ccgggccttc gggccagacg ggcgcggcgc agaacacgaa cacgcgcgcg gccgagttcc
     6601 aggtcttcga gtccgagggc tttgcggccg cgggcgaccg cgtcaccgac ctcaacatca
     6661 gcacgctcgt gaacggctgc gtgcccgagt tacagggcaa ggtgacgctc gacggcccgg
     6721 cgcccgccgg cggcacggtc gtcaccatca cggagaacca cccggcggcc gagttcccga
     6781 cgaccgtcct ggtgcctgaa ggccatacca gcaggagctt caagttcacc gtgtcgcccg
     6841 tcaccacggt caccaagggc gacgtgacgg cgaccgcggg cggggggacg atcacccgca
     6901 cgctgacggt ccggccgata cgcgtggaca cgctcacgct caacccgaac cgcgtgaagg
     6961 gcggcaactc gtccaccggg acggtcacgc tcgaatgcgg cgcggcgccc ggcgacatca
     7021 cggtcgcgct cgaaagcagc gcgccgtcgg tcgcctccgt accggcgtcg gtcgtcatcc
     7081 cggccggcag ccagtcggcc accttcacca taacgaccaa gcccgtgaac gcggcgaaga
     7141 ccatagggat caaggcgacg gcgggcggtc tgaccataag ctcgcccctc gtggttgaac
     7201 cgtaacgggg cgccccaaga caggggccgc ccccgggcga gacttgaatc tcgcccgggg
     7261 gcggcccctc acacttataa cccttcaacg aacttctagg aaacgacaat gagactccga
     7321 aggtcatacc gccgcgcgtc gctcgcggcg atgatggcgg tgctcttcgc cgccgcgctc
     7381 atgaacgccg gcagcggctc gacgcagacg gtggcgcgcg acctgtggcg cgacatagcc
     7441 gaaggctcga tactcggcgc gggcgcgcgc gtcgtcgtcc ccgaggctta caggactgtg
     7501 cggctcgacg gcggcgcgct ctccgaggtg ctctcggcgg cgccgctgga gttcacggcc
     7561 gcggcgcggc agtcgcaggc cgtcctgtcg gtgccgatgc cggacggttc cttcagccgt
     7621 ttccgcgtag aggagtcgcc gataatggag ccggcgctgg ccgccaagca cccggag
//
LOCUS       DASPKR010000631        12508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_880928, whole genome shotgun sequence.
ACCESSION   DASPKR010000631 DASPKR010000000
VERSION     DASPKR010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12508)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12508
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_880928"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1182
                     /locus_tag="VD968_16855"
     CDS             <1..1182
                     /locus_tag="VD968_16855"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030420 - establishment of competence for
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HYE16110.1"
                     /translation="CAALALSAASAQLASPFVWTAETATRMMAGGVKPFASAGVAGLR
                     LPEYSGAAAAVYALYFVPLIVIARALLDWRPVGDGPPIKNERPGRALKLASVALIIML
                     VVIIAHPSSAGGSGGRLRVDFLDVGQGDAALITTPDGTTLLVDGGGRPRFAGDGDGEA
                     FEPDRRGVGDSVVSEYLWWRGLARVNYLFATHADADHAEGLGDVARNFGVGAAFVARA
                     PAGDEELARFTSALREAGVPAYLVGRGDRLRLGGVTIEALWPPPVTAESARGLPYRND
                     DSLVLRVSFGRRRILLTGDIETAAERALVAARDALDSDALKVAHHGSRTSTTEAFLNA
                     VRPSLAVISVGTDSPHGHPHTSVTERLRAAGVPFLTTGERGTITVSTDGEDLRVETFV
                     R"
     gene            1244..1630
                     /locus_tag="VD968_16860"
     CDS             1244..1630
                     /locus_tag="VD968_16860"
                     /inference="COORDINATES: protein motif:HMM:NF013234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannose isomerase type II C-terminal
                     cupin domain"
                     /protein_id="HYE16111.1"
                     /translation="MTERSVEDVSPSYDRRPWGSFTVLDEGRTYKVKRIEVLAGKRLS
                     YQRHARRAEHWMVVEGEARVTLDGEDILLRVGETVDIPVGTAHRIGNAGPDALVFIEI
                     QRGDYLGEDDITRLEDDFGRIEEARG"
     gene            complement(1693..3006)
                     /locus_tag="VD968_16865"
     CDS             complement(1693..3006)
                     /locus_tag="VD968_16865"
                     /inference="COORDINATES: protein motif:HMM:NF025042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4147 domain-containing protein"
                     /protein_id="HYE16112.1"
                     /translation="MGTEGLRRAALEIFGDVLRRVDAREAVLVSSRLLDFGEPSAKIY
                     SVAIGKAAAAMASALEERLGERLARGVISSPSRGAALSARWQRFEGGHPLPNEESLEA
                     ARAAFELLREADASRSPVVFLVSGGGSAMLEWPRDGRLTLEDLRDANRVLISCGAGIT
                     EVNAVRRALSAVKGGRLAALAPGAKQLTLIISDTGAGRESDVASGPTLRPPPGSPRAA
                     EVVGRYGLAARLPPRALSAIEDERDAVEPASDMAATRRHFVLLDNRAACEAAAESARE
                     RGFVVETAFDVEEQEVGEGAALLASRLFELYEREGGGAVCIVSGGEFACPVRGGGRGG
                     RNSETALRCAFEFERLSAGRAGGAKPKGVVALCAGTDGVDGNSPAAGALADSTTLVRA
                     RLRGLDAATHLLESDAYSFFDSLGDAVVTGPTGTNVRDVRVLLAE"
     gene            complement(3019..3360)
                     /locus_tag="VD968_16870"
     CDS             complement(3019..3360)
                     /locus_tag="VD968_16870"
                     /inference="COORDINATES: protein motif:HMM:TIGR00426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HYE16113.1"
                     /translation="MSRPLLTKTCARIIMCCAVAAGAASCVKLPRRHAPAAATHAASS
                     VPDGAHLININRATREELERLPGIGPALAARIVEHRERHGPFRRAEHLMMVRGISERR
                     FLALRARVTAE"
     gene            complement(3617..6325)
                     /locus_tag="VD968_16875"
     CDS             complement(3617..6325)
                     /locus_tag="VD968_16875"
                     /inference="COORDINATES: protein motif:HMM:NF013727.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015616 - DNA translocase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HYE16114.1"
                     /translation="MATAQTEVRTRPSGGAVAPRNTRRNEIIAIALFASSALLALCLV
                     SYSPNDPSWSAAAEGGARNWTGLAGANVAAALFQFFGLAAVLLPLLLTAAAWRRFRTR
                     RIHAPLTRVIGLAAIMLSIAALSALYFTEPLVDRSFNAGGFVGVLVAGTLRGALNTVG
                     ATVLLAAAAAVGLLLATNFSFVNAYERVSAALANPKGFFRRTVERFRAWQTARREQAA
                     ARAEARREARAAREQEEAEARSLAALSPTAAGDGEGAQSPPTIAGNAGAKVQTGSAQS
                     AIRRAAATAGTLSREDELRARLAEAEAELASIIVQPSADGPTQTRVVTNPEQVADTQS
                     AGAKRAHTPRAVAAEEPSRDAADVSDMLRTAAVVRTEFDDDDAVLDDSAAAVAPRPQR
                     RAAPTAAQRAEVSAVAAMLDYKFPALDFLNAAPPRREQADEELLQIAQRVAEKCKEFN
                     VTGQIKHICPGPVVTTYEFKPDPGVKYSRVTGLVDDLCIALEAESVRIDRLPGKPHVG
                     IEVPNPERETIFLREVLESRQFRESESKLTIALGKTIDGLNYAADLTRMPHLLIAGAT
                     GTGKSVCLNSLVISILYKARPDEVKFIMIDPKRLELGLYADIPHLATPIITEPKKAAN
                     ALKWAVSQMEQRYKQLAQWGVRNIDGYNTEVERRNNVLDFDDEGNPHKTLPYIVIIID
                     ELADLMMTCGSDVEEAITRLAQMARAVGIHLVLATQRPSVDVITGLIKANFPSRIAFR
                     VSSKVDSRTIIDSNGAEQLLGRGDMLFLPPGTSRLVRVHGAYLDESEVSRVVAHIKAQ
                     GGEPVYDETITQSEEEAAGADGAGGERDELFEPALRICCEMKRASTSVLQRRLRIGYG
                     RAAAILDGLEREGFIGQADGARPRPVLGRAYETVAQWDSVEEEADY"
     gene            complement(6338..7448)
                     /gene="prfB"
                     /locus_tag="VD968_16880"
     CDS             complement(join(6338..7375,7377..7448))
                     /gene="prfB"
                     /locus_tag="VD968_16880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_319006089.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HYE16115.1"
                     /translation="MIETLTLQDLRTSFEELRTRVEQLGGFFDVAAKREELSRLESRA
                     SEPDFWSDQEGAQKLLQERSRLERVIKRQEGFESAVADASVLFEFAEEDEESAREFRQ
                     LIERMGHEVSQAETEMLLSGENDARNAICTIHPGAGGTESQDWAEMLLKMYLKWAEKR
                     GFKTEIIEYQPGEEAGLKSVTFRVEGEYAYGLLSAEAGVHRLVRISPFDQAARRHTSF
                     ASLFVSPEIDENIEVEINEKDLRVDTYRSTGAGGQHINTTDSAVRITHLPTGIVVACQ
                     NQRSQHQNRAVAMQVLRSRLYELELEKRRAETAALEAAKSDISFGSQIRNYVLAPYRL
                     VKDARTKFERGDVDSVLAGDLDHFIKAYLLSRRAA"
     gene            complement(7454..9058)
                     /gene="lnt"
                     /locus_tag="VD968_16885"
     CDS             complement(7454..9058)
                     /gene="lnt"
                     /locus_tag="VD968_16885"
                     /inference="COORDINATES: protein motif:HMM:TIGR00546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HYE16116.1"
                     /translation="MNRLTARARSESPTLAEAGLATLTALLLTLSFPDFDLWPLAWVA
                     LVPLVVAVARRPRAVPSLLSGWLAGTLFFYASCYWLTVPMTRYAGFPAWLAYPLLLPV
                     TVAAGFFPALFALGLSRLCARWGAAAVWAAPALWAAAEWARLGAIGQLWNALGYSQAF
                     VSRLVQPARFGGVYAVGFLVVAVNVTLAYALLRRGARSLAVSLAAVALVAAAFVSANV
                     SAPRGEAEEPSVVVVAVQPNVLPDFDRPVSEYRALSERHFEMSRAAVLSLDAGRGPLS
                     ALPRVVVWPESPMNFRYARDSAFRERVAAFAREHRAALLFNSLEPAPDEGGFNAAVLV
                     NEEGRLAFQYDKIRLMPFGEYVPLPRWLPFAEGVRGVVGEFTPGASYTVMSLGGGEGG
                     VKAGVFICLESAYPHITRRFVEGGADVLIEITNDAYQGDTAVLRQHMANAVFRAAETA
                     RPVLRVTNTGITARISPRGEVLEEVEKNRQAVQAWPVARSDGSRTFYVRHGDLFAVAC
                     ASLSLLTLAATFAGRGRLREPFARGS"
     gene            complement(9569..9871)
                     /locus_tag="VD968_16890"
     CDS             complement(9569..9871)
                     /locus_tag="VD968_16890"
                     /inference="COORDINATES: protein motif:HMM:NF014062.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HYE16117.1"
                     /translation="MRALAFTLAVLCAAALSLLAYVALSSRHRKSSRAPVRLLGRAGS
                     VVRELAPEGFVLVEGELWPARLRGGGGLSRGRVRVVGASGCALEVEPAADGPEAGS"
     gene            complement(9949..11688)
                     /locus_tag="VD968_16895"
     CDS             complement(9949..11688)
                     /locus_tag="VD968_16895"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE16118.1"
                     /translation="MLKRLAVLLLAAAAAAALTARAAAAQGVTDTVLVLPFENTSGQR
                     EFNWVGESFADSLSELLGAHGLRVVSPDARELAYQRLRLPLTVIPSRATAIKLAREAG
                     ASLIVLGTYEVSPPRDEKSPAEVRGSARLVRVAEGRISGKQMPDGRWATHEFFYGDAL
                     INLQTVQGKLAYQILYEQDDKLPFSQNLIIEQATKVPPKAFEALVKATMTDDREKKSA
                     YLTNAMLEYAKANPGSVYKQAAFELGHLAYSQGDYKKAAEHFSALQKRDPHYAEAAFY
                     AALSYWRLGETQTALDTLLPLTSDMPLTSIYNNAGALATQIARSEKNASKREALLAQA
                     TNVLSRAVESAPEDAMVRFNYAYALMLSGKHAEAARELTEAVKENSRDPEALFILAKM
                     LEKAGQADEAARYDNDVRKLYPGYAKAQLEWQQSQTFSLIGLRMRGDLNRAEILHVAE
                     PPPDSVADAGAQDLLAKARELYAAGRDDEALTELRDVVRVEPMNAEAYLLTGRIYQRR
                     GELASAINQLKTSIFWDTERKLIDAHILLGRIFLERGDRAQATAYAHSAMQIDPNNQE
                     ALALQRQLQVGIK"
     gene            complement(11829..>12508)
                     /locus_tag="VD968_16900"
     CDS             complement(11829..>12508)
                     /locus_tag="VD968_16900"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HYE16119.1"
                     /translation="QCIPLRKETDTEQAAAMIVNPFTAWALMGIAQRRQVRAVVQTAA
                     AGALGRMIVRLAASRGVGLINVVRRREQVALLRGEGALHVLDSSEENFDERLRELCAS
                     LRATVLFDAVAGEMTGRVLRAMPRKSKAVVYGTLSQEAAAVDPRSLIFEGKSVEGFWL
                     SDWLRSQSIFAKLAASGRVQKLLAGELKTEVRARLPLERAAEGLGQYVHDMTGGKVLF
                     VPGMREG"
BASE COUNT         2010 a         4188 c         4329 g         1981 t
ORIGIN      
        1 tgcgccgcgc tcgcgctctc ggccgcgagc gcgcagctcg cctcaccctt cgtgtggacg
       61 gccgagaccg cgacgcgcat gatggccggg ggcgtcaagc cgttcgcctc cgcgggcgtc
      121 gctggcctgc gactgcccga gtactccggc gcggccgcgg ccgtctatgc cctctacttc
      181 gtgccgctca tcgtcatcgc acgcgccctg ctcgactggc ggcccgtagg agacggcccg
      241 cctatcaaga acgaaagacc ggggcgcgct ctcaagctcg cttcagtcgc cctcatcatc
      301 atgctcgtcg tgatcatcgc gcacccttcg agcgcgggcg ggagcggcgg caggctgcgc
      361 gttgacttcc tcgacgtggg tcagggtgac gccgcgctga ttacgacgcc cgacggcacg
      421 accctgctcg ttgacggcgg cggccgcccg cgcttcgcag gcgatggcga cggcgaggct
      481 ttcgagccag accgccgggg cgtgggagat agcgtcgtct ctgaatatct ttggtggcgc
      541 ggcctcgcgc gcgtcaacta cctcttcgcc acgcacgccg acgccgacca cgccgagggc
      601 ctcggcgacg ttgcgcgcaa cttcggcgtc ggcgcagcct tcgtcgcgcg cgcgccggcg
      661 ggcgacgagg aactcgcgcg cttcacttcc gccctgcgcg aggcgggcgt gccagcttac
      721 ctcgtcggcc gcggcgaccg ccttcgcctg ggcggcgtca caatcgaagc cctctggcct
      781 ccgcccgtca cggccgaaag cgcccgtggg ctgccctacc gcaacgacga ctcgctcgtc
      841 ctgcgcgtga gcttcggccg caggcgcata ctcctcaccg gcgacataga gaccgcggcc
      901 gagcgcgcgc tcgtggccgc gcgtgacgcg ctcgacagcg acgccctcaa ggtcgcccac
      961 cacgggagcc gcacttccac gaccgaagcc ttccttaacg ccgtgcgccc ctcgctcgcc
     1021 gtcatctccg tcgggacgga ttcgccgcac ggccacccgc acacgtcagt cacagagcgc
     1081 ctccgagccg cgggcgtccc cttcctgacg acgggcgagc gcggcacgat aaccgtctcg
     1141 accgacggcg aagacctccg cgtcgagacg ttcgtcaggt gagccgcggc gggcggctaa
     1201 cattttcttt cctacccgag ccggttttct gtactatccg ggaatgacag agagaagcgt
     1261 tgaggacgtt tcgccctctt acgaccggcg gccgtggggc tcgttcacgg tgctcgacga
     1321 ggggcgaacc tacaaggtga agcgtataga ggtgctcgcg ggcaagcgcc tgagctacca
     1381 gcgccacgcg cgacgcgccg agcactggat ggtcgtcgaa ggcgaggcgc gcgtcacgct
     1441 cgacggcgaa gacattctcc tgcgcgtcgg cgagaccgtt gacatccccg tcggcacggc
     1501 gcaccgcata ggcaacgcgg gtcccgacgc cctcgtcttc atcgaaatcc agcgcggcga
     1561 ttacctcggc gaggacgaca tcacgcgcct cgaagacgac ttcgggcgga tagaagaagc
     1621 caggggctag ggactggagg ctagtagaag acttgttttt aagctagcct ccagtctcta
     1681 gcccctgtcc cgtcattccg cgagcaggac gcgaacgtcg cggacgttcg tccccgtggg
     1741 gcctgtgacg acggcgtcgc cgagcgagtc gaagaaggaa taggcgtcgc tctcaagtaa
     1801 atgggttgcg gcgtcgaggc cgcgcaggcg cgcgcggacg agcgtggtcg agtcggcgag
     1861 ggcgcctgcc gcggggctgt tgccatcaac gccgtccgtc ccggcgcaga gcgcgacgac
     1921 gcctttcggc ttcgcgcccc ccgcccgccc cgccgaaagt ctctcgaact cgaaggcgca
     1981 cctgagcgcc gtctcggagt tgcggccacc gcgcccgccg ccgcgcacgg ggcaggcgaa
     2041 ctccccgccc gacacgatgc agaccgcccc acctccctcc ctctcgtaaa gctcaaagag
     2101 cctcgaagca agaagcgccg cgccttcgcc gacctcctgc tcctcaacgt caaacgcagt
     2161 ctcgacgacg aagccgcgct cgcgcgccga ctcggccgcg gcctcgcacg cggcgcggtt
     2221 gtcgagtagg acgaagtggc ggcgcgttgc ggccatgtca gacgcgggct caacagcgtc
     2281 tctttcgtct tcgattgcgc ttagggcgcg cgggggtagt cgcgcggcga ggccgtagcg
     2341 gccgacgacc tcggcggcgc gcggcgagcc gggcggtggt cgaagcgtcg gccccgaggc
     2401 cacgtccgac tcgcggcccg cgcccgtgtc ggagattatc agcgtcaact gcttggcccc
     2461 cggcgcgagc gcggcgaggc gcccgccctt cacggccgag agggcgcgcc gcacggcgtt
     2521 gacctccgtg atgcctgccc cgcacgagat gagaacgcgg ttggcatcgc gcaggtcttc
     2581 gagcgtcagc cgcccgtcgc gcggccactc caacatcgcc gagccgccgc cggagaccag
     2641 gaagacgacg ggcgagcggg aggcgtctgc ctcgcgcaga agctcgaagg ccgcgcgcgc
     2701 ggcttccaaa ctttcctcgt tcggcagcgg gtggccgccc tcgaatcgtt gccagcgcgc
     2761 tgagagggcc gcgccgcgcg acggcgaaga gatgacgccg cgggcaagtc tttcgccgag
     2821 acgctcttcg agcgccgagg ccattgctgc cgccgccttg ccgattgcca ccgagtagat
     2881 tttcgccgag ggctcgccga agtcgaggag tcgggaggag acgaggacgg cctctcgcgc
     2941 gtcaacgcgg cggagcacgt cgccgaagat ttccagcgcg gcgcggcgaa gcccctcagt
     3001 ccccatcgcg cgaacccctc actccgccgt cacgcgcgcg cgaagcgcga ggaagcgccg
     3061 ctcgcttatg ccgcgaacca tcatcaggtg ctcggcgcgg cggaaggggc cgtggcgctc
     3121 ccggtgctct acgatgcgcg cggcgagcgc aggccctatg ccgggcagtc gctcaagctc
     3181 ttcgcgcgtg gcgcggttga tgttgatgag atgagcgccg tccggaacgg atgaggctgc
     3241 gtgagtggcg gcagcgggcg cgtggcggcg tggcaatttg acgcaagatg cggcgccggc
     3301 cgcgaccgcg cagcacatga tgatacgcgc gcaggtctta gtgagaagcg ggcgtgacac
     3361 ggccggaagc ctcactcaca aacatttcgt caactatgcc gcgctcgtgt gcaaaatgct
     3421 agaagtctaa aattttcaga aacttgtaac gccggaaagc cggttatcca cagagttttc
     3481 cacagtttct gtggaaaact tgtcgaaagc atgtcgtcaa aaagtattga gacggagtaa
     3541 aaattaacac caacgagcgg ccgatcagca ctcatcaatg accgccgtca ccgacagcct
     3601 gtgaccgtct cccgcttcag taatctgcct cctcctcgac gctgtcccac tgcgcgacgg
     3661 tctcgtatgc gcggccgagg acggggcgcg ggcgggcgcc gtcggcttgg cctatgaagc
     3721 cttcgcgctc gaggccgtcg aggatggcgg cggcgcggcc gtagcctatg cgcagtcgcc
     3781 gctgaagcac cgaggtcgag gcgcgcttca tctcgcagca gatgcgcaag gcgggctcga
     3841 acagctcgtc gcgctcgccg cccgcgccgt ccgcccccgc ggcctcctcc tccgactgcg
     3901 tgatggtctc gtcatagacg ggctcgccgc cctgagcctt gatgtgcgcg acgacgcgcg
     3961 aaacttccga ctcgtccagg taagcgccgt ggacgcgcac gagccgggag gtgccgggcg
     4021 gcaggaagag catgtcgcct cggcccaaga gctgctcggc gccgttcgag tcaatgatgg
     4081 tgcgcgagtc aaccttcgag gagactcgga aggctatgcg cgacgggaag ttcgccttta
     4141 tcaggccggt gataacgtca acgctcgggc gctgcgtggc gagcacgagg tgaatgccga
     4201 cggcgcgcgc catctgcgcg aggcgcgtga tggcctcctc aacgtcggag ccgcaggtca
     4261 tcatcaggtc ggccaactcg tcaatgatga tgacgatgta ggggagcgtc ttgtgcgggt
     4321 tgccttcgtc gtcgaagtcg aggacgttgt tgcggcgctc gacctccgtg ttgtagccgt
     4381 caatgtttcg cacgccccac tgcgcgagct gcttgtaacg ctgctccatc tgcgagacgg
     4441 cccacttcag cgcgttcgcg gccttcttgg gctcggtaat gatgggcgtc gccaggtgcg
     4501 ggatgtccgc gtagagcccg agctccaaac gcttcgggtc aatcatgatg aacttcacct
     4561 cgtcgggccg ggctttgtag agaatcgaga tgacgagtga gttcaagcag accgacttgc
     4621 ccgtgccagt cgcgccggct atgagcaggt gcggcatgcg cgtcaggtcg gccgcgtagt
     4681 ttaggccgtc aatcgtcttg ccgagcgcga ttgtgagctt cgactccgac tcgcggaact
     4741 ggcgtgattc gagaacctcg cgcaggaaga tggtctcgcg ctcggggttg gggacttcga
     4801 tgccgacgtg cggcttgccg ggtaggcggt ctatgcggac gctctcggct tcgagcgcga
     4861 tgcagaggtc gtcaacgagc cccgtcacgc gcgaatattt gacgccgggg tcgggcttga
     4921 actcgtaagt ggtgacgacg gggccggggc agatgtgctt tatctggccg gtgacgttga
     4981 actccttgca cttctcggcg actcgctgcg cgatctgcaa aagctcctcg tcggcctgct
     5041 cgcggcgcgg cggcgcggcg ttgaggaagt ccagggcggg gaacttgtag tcgagcatcg
     5101 ctgcgacggc gctcacctcc gcgcgctgcg cggccgttgg cgcggctcgg cgctgcgggc
     5161 ggggcgcgac cgcggcggcg gagtcatcaa ggacggcgtc gtcgtcatca aactcggtgc
     5221 ggacgacggc agcggtgcgc agcatgtcgg acacgtcggc cgcgtcgcgc gaaggctctt
     5281 cggccgcgac ggcgcgcgga gtgtgggcac gtttggctcc ggccgattga gtgtcggcga
     5341 cctgctccgg gttcgtgact acgcgggtct gtgtggggcc gtcggccgag ggctgcacga
     5401 tgattgatgc tagctcggcc tctgcctcgg cgagccgggc gcgaagctca tcttcgcgag
     5461 agagcgtgcc ggcggtggcg gcagcgcgcc tgatggccga ctgcgccgag cccgtctgaa
     5521 ctttcgcgcc ggcattgccc gcgatggtcg gcggcgactg agcgccttcg ccatcgcccg
     5581 cggcagttgg tgagagcgcc gcgagcgagc gtgcctcggc ctcttcctgc tcgcgcgcag
     5641 cgcgggcctc tcgccgcgcc tcggcgcggg ccgcagcctg ctcgcgtcgc gccgtctgcc
     5701 aggcgcggaa gcgctcgaca gtgcggcgga agaatccctt cgggtttgcg agcgccgccg
     5761 acacgcgctc gtatgcgttg acgaaggaga aattggtggc gagcagcagg ccgacggccg
     5821 cggcggccgc gagcagcacg gtcgcgccca ccgtgttgag cgcgcctcga agggtgccgg
     5881 cgacgagcac gccgacgaag ccaccggcgt tgaagctgcg gtcaacgagc ggctccgtga
     5941 agtagagcgc ggagagcgct gcgatggaga gcattatggc cgccaagcct atgacgcgcg
     6001 tgagcggcgc gtggatgcgg cgcgtgcgga agcggcgcca ggcggccgcc gtcaggagca
     6061 gcggcagaag cacggccgcg agcccgaaga actgaaagag cgcggcggcg acgttggcgc
     6121 cggcgaggcc cgtccagttg cgcgcgccgc cctcggccgc ggcgctccag gaggggtcgt
     6181 tcgggctgta agagacgagg cagagcgcga gcagggcgct cgacgcgaag agcgcgatgg
     6241 cgattatctc gttgcgccga gtgttgcgcg gggcgacggc gccgcccgac ggcctcgtcc
     6301 gaacttcggt ctgtgcagtt gccataagcc tccactttta cgccgcgcgg cgcgagagca
     6361 ggtacgcctt gatgaagtgg tcgaggtcgc cggcgagcac ggagtcaacg tcgccgcgct
     6421 cgaacttggt gcgcgcgtct ttgactaaac ggtagggcgc gagcacgtag ttgcgtatct
     6481 gcgagccgaa ggagatgtcg gacttcgccg cctcgagcgc ggccgtctcg gcgcgccgct
     6541 tctcaagctc caactcgtat agccgcgagc gtaagacctg catcgccacg gcgcgattct
     6601 ggtgctgcga gcgttggttc tggcaggcga cgacgatccc cgtgggcagg tgcgtgatgc
     6661 gcaccgcgga gtcggtcgta ttgatatgct gcccgcccgc gcccgtcgag cggtaggtgt
     6721 ccaccctcaa gtccttctcg ttaatctcga cctcgatgtt ctcgtcaatc tcgggcgaga
     6781 cgaagagcga agcgaagctc gtgtggcggc gcgcggcctg gtcgaaggga gagatgcgca
     6841 cgagtcggtg gacgccggcc tcggccgaaa gcagcccgta ggcgtactcg ccctcgacgc
     6901 ggaacgtgac gctcttcagg cccgcctcct ctcccggctg gtactcgatg atctccgtct
     6961 taaacccccg cttctcggcc cacttcagat acatcttcaa aagcatctcg gcccagtcct
     7021 gcgactccgt gccgcccgcg ccggggtgta ttgtgcagat ggcgttgcgc gcgtcgttct
     7081 cgcccgagag cagcatctct gtctcggcct gcgagacttc gtgccccatg cgctctatga
     7141 gctggcggaa ctcgcgcgcg ctctcctcgt cctcctccgc gaactcgaag agcacggagg
     7201 cgtcggcgac ggccgactcg aaaccctcct gccgctttat gactcgctcc agacggctgc
     7261 gctcctgcaa gagcttctgc gcgccctcct ggtcgctcca gaagtcgggc tccgaggcgc
     7321 gcgattcgag ccttgagagc tcctcgcgct tggcggctac atcaaagaaa cctcccgagc
     7381 tgctcgacgc gcgtgcgcag ctcttcgaag ctggttctca agtcctgtaa cgttaaagtc
     7441 tcaatcatcc ctttcaactt cccctcgcga atggttctct taagcgaccg cgccccgcga
     7501 acgtcgcagc gagcgtgagc agcgatagtg acgcgcaggc cacggcaaaa aggtcgccgt
     7561 gcctcacgta gaaggtgcgc gagccgtcgg agcgcgcgac cggccatgct tgcacggcct
     7621 gccggttctt ctcgacctct tccagcactt cgccgcgcgg cgatatgcgc gccgttatcc
     7681 ctgtgttcgt aacgcgcagg acgggccggg cggtctcggc ggcgcggaag accgcgttcg
     7741 ccatgtgctg gcgcaggacg gccgtgtcgc cctggtatgc gtcgttcgtg atttcaatca
     7801 gcacgtcggc gccgccctcg acgaagcggc gcgtgatgtg agggtaggcc gactcgaggc
     7861 agatgaatac gcccgccttc accccgccct cgcctccccc gagcgacatg acggtgtagc
     7921 tcgcgccggg ggtgaactcg ccgactacgc cgcgcacgcc ctccgcgaag ggcagccagc
     7981 gcggcagcgg cacgtactcg ccgaacggca tcaggcgaat cttatcatac tgaaaggcga
     8041 gccggccctc ttcatttacg agcaccgcgg cgttgaagcc gccttcgtcg ggcgcgggct
     8101 cgagcgagtt gaagaggagc gctgccctgt gctcgcgcgc gaacgcggcg acgcgctcgc
     8161 ggaaggccga gtcgcgcgcg tacctgaagt tcatgggcga ctcgggccag acgacgacgc
     8221 gcggcagcgc ggagagaggg ccgcgcccgg cgtccaggga gagcacggcc gcgcggctca
     8281 tctcgaagtg gcgctcggag agcgcgcggt actcgctcac gggccggtcg aagtccggca
     8341 gcacgttcgg ctgcacggcg acgactacga cggaaggctc ttcagcctct ccgcgcggag
     8401 cgctcacgtt ggctgatacg aaggccgcgg cgacgagggc gacggccgcg agcgagacgg
     8461 cgagcgagcg cgcgccgcgc ctgagcagcg cgtaggcgag cgtgacgtta acggccacga
     8521 ctaagaagcc gacggcatag accccgccga agcgcgcggg ctgtacgagc cgggagacga
     8581 acgcctgcga gtagccgagc gcgttccaga gctggcctat cgctccgagc cgcgcccact
     8641 cagccgccgc ccacagcgcc ggcgccgccc acacggcggc cgccccccaa cgcgcgcaca
     8701 gccgcgagag cccgagcgcg aacagggcgg ggaagaagcc cgcggcgacc gtgacgggaa
     8761 gcaggagcgg gtaggcgagc caggctggga agcccgcgta gcgcgtcatc ggaacggtca
     8821 gccagtaaca cgacgcgtag aagaagagtg tgccggcgag ccagcccgac aggagcgacg
     8881 gcaccgcgcg cggcctgcgc gcgacggcga cgacgagcgg cacaagcgcc acccaagcga
     8941 gcggccaaag gtcgaagtcc gggaaggaga gcgtgagcag cagcgctgtc aaggtcgcga
     9001 ggccggcttc cgcgagcgtc ggcgactcgg agcgcgcgcg cgcagtaagc ctgttcaagc
     9061 gcccgcgcgc atgcccggtc gcactctctg aaccccttgc cggcacgcgc gcgagtttaa
     9121 cagaagcggc ctcggccggc ccggccaaaa aaattttcag ggctgcggaa aattgcccgc
     9181 ggctgcggca aatcgtcgcc ccttttgacg taaagcgtca ccggcccggt gacaaatttt
     9241 gtcgggatga cggcccggcg gcacggcgcg cggtcgcccc gaagcgacgc gggcagttgc
     9301 gcaagacggc ggcgagcaca ggaaattcgt taaaggtggc gagaaaaaag ccccaaaagc
     9361 gggagaaccc ggccagggcg gccaggttcc tgaaaggtag gggaagttgg ttgggtcgct
     9421 cggcgggcgg ctggcgtagc ggcaggccac gctcagagaa gtgatggcgg cggggtcacg
     9481 gttcaacttc ttccgtgctt gccgaccacg ataaaagcac ttcgcgtgcc acgaacgagc
     9541 gactttcaga aaccacttag cggcgtcttc aggaaccggc ttcggggccg tccgccgcgg
     9601 gctcgacttc gagggcgcag ccgctcgcgc cgacgaccct cacgcggccg cggctcaagc
     9661 cgccgccccc gcgcaggcgg gcgggccaga gctcgccttc aactaaaacg aaaccttccg
     9721 gcgccaactc ccgcacgacc gaccccgctc gccccaggag gcgcacgggc gctcgcgaag
     9781 acttcctgtg cctcgaactg agcgcgacgt aggcgaggag cgagagcgcg gcggcgcaga
     9841 gaactgcgag cgtgaaggcg agcgctctca taaggggacg gaaggaaagc aacggaggtt
     9901 gatgaaagca gcgctttcat caacctcccc ggcggaaggc ccgcgccgct acttgatgcc
     9961 tacctgtagc tggcgctgta gtgcgagcgc ctcctggttg ttcgggtcaa tctgcatggc
    10021 gctgtgcgcg taggccgttg cctgcgcccg gtcgccgcgc tcgaggaaga tgcgccccaa
    10081 gagtatgtgc gcgtctatga gcttgcgctc ggtgtcccag aagatggagg tcttgagctg
    10141 gttgatggcg gaggccagct cgccgcggcg ctggtatatg cgcccggtca ggaggtaagc
    10201 ctccgcgttc atcggctcga cgcgcactac gtcacgaagc tccgtgagag cctcgtcgtc
    10261 tcggccggcc gcgtagagct cgcgcgcctt cgcgagcaag tcctgcgcgc ccgcgtcggc
    10321 gacgctgtcg ggcggcggct cggcgacgtg cagaatctct gcgcggttta agtcgccgcg
    10381 catgcgcagc ccgattagcg agaaggtctg cgactgctgc cactctagct gcgccttagc
    10441 gtagccgggg tagagcttgc gcacgtcgtt gtcgtacctg gcggcctcat ccgcctggcc
    10501 cgccttctcc agcatcttgg cgaggatgaa gagcgcctcg gggtcgcgcg agttctcctt
    10561 gacggcctcc gtgagctcgc gcgcagcctc tgcgtgcttg ccggagagca tgagcgcgta
    10621 ggcgtagttg aagcggacca tcgcgtcctc gggggccgac tcgacggcgc ggctcaggac
    10681 gttcgtggcc tgcgcgagca gcgcctcgcg cttcgaggcg ttcttctccg aacgggctat
    10741 ctgcgtggcg agcgcgccgg cgttgttgta gatgctcgtg agcggcatgt cgctcgtgag
    10801 cgggagcagg gtgtcgagcg ccgtctgcgt ctcgccgagg cgccagtagc tcaaggccgc
    10861 gtagaaggcg gcctcggcgt agtgcgggtc gcgcttctgc agggcggaga agtgctcggc
    10921 agccttcttg tagtcgccct gcgagtaggc gaggtggccc agctcgaagg cggcctgctt
    10981 atagacggag ccggggttgg ccttcgcgta ctcgagcatg gcgttcgtga ggtaggccga
    11041 cttcttctcg cggtcgtcgg tcatcgtcgc cttgacgagc gcctcgaagg ccttcggcgg
    11101 gactttagtc gcctgctcga ttatgaggtt ctgcgagaag gggagcttgt cgtcctgctc
    11161 gtagagaatc tggtaggcga gcttgccctg cacggtctga aggtttatga gggcgtcgcc
    11221 gtagaagaac tcgtgcgtgg cccatcgccc gtccggcatc tgcttgccgg atatgcgccc
    11281 ctcggcgacg cgcacgagcc gcgccgagcc gcggacttcg gccggggact tctcgtcgcg
    11341 cggggggctc acttcatacg tgccgagcac gatgagcgag gcgccggcct cgcgcgcgag
    11401 cttgatggcg gtggcgcgcg aggggatgac ggtgagcggc aggcgcaggc gctggtaggc
    11461 cagctcgcgc gcgtcaggcg agaccacgcg aaggccgtgc gcgccgagca gctcggagag
    11521 cgagtcggcg aagctctcgc ccacccagtt gaactccctc tgccccgaag tgttctcgaa
    11581 gggcaggacg agcaccgtgt ccgtcacgcc ctgcgccgcc gcggcgcgcg ccgtgagcgc
    11641 ggccgccgcg gcggccgcga gcaatagaac tgctagtcgt tttaacatca cttaagagcc
    11701 ttgtgaggca atattgtagc ggttagcgcg ggcgcccaca agccgacata acctccgcca
    11761 tttcaggcag ataaacatag atgccgacgc cttcggccgg gatgctcaga cagagggccg
    11821 gcgacccgct acccttcgcg catccccggc acgaaaagca ccttcccgcc cgtcatgtcg
    11881 tgcacgtact ggccgagccc ctcggcggcc cgctccagcg gcaggcgcgc gcgaacctcc
    11941 gttttcagct cgccggcgag gagcttctgt actctgccgg aggccgcgag cttggcgaag
    12001 atgctctgcg agcggagcca gtccgagagc cagaagccct cgacggactt gccctcgaag
    12061 atgagcgagc gcgggtcaac cgcggcggcc tcctgcgaga gcgtgccgta aacaacggcc
    12121 ttactcttcc gcggcatcgc ccgcagcacg cgccccgtca tctcgcccgc gacggcgtcg
    12181 aagaggactg tcgcacgcag gctcgcgcac agctcgcgta gccgctcgtc aaaattctcc
    12241 tcggagctgt cgagcacgtg aagcgcgcct tcgccgcgca gcagcgcgac ctgctcgcgg
    12301 cgccgcacga cgttgatgag cccgacgccg cgcgacgcgg cgagccggac aatcatgcgc
    12361 ccgagcgcgc cagccgctgc cgtctgcacg acggcgcgca cctgccgcct ttgggctatg
    12421 cccatcagcg cccacgccgt gaaggggttg acgatcatcg cggcggcctg ctcggtatca
    12481 gtctccttcc gcagcggtat gcactgcg
//
LOCUS       DASPKR010000632         2404 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1261313, whole genome shotgun sequence.
ACCESSION   DASPKR010000632 DASPKR010000000
VERSION     DASPKR010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2404)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2404
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1261313"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..536)
                     /locus_tag="VD968_16905"
     CDS             complement(<1..536)
                     /locus_tag="VD968_16905"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HYE16120.1"
                     /translation="MRPRTLRLAGFCVLILLAGCKQDPTTNATLSPQEQAAADAAAGA
                     APGATPSATPTPQPRPSGPVEFTDVTAEAGIRFRHNSGAAGKKYLPETMGSGAAFLDY
                     DNDGWQDILLVNSTGWPGERGAQTTSALYRNNQDGTFRDVTREAGLAQVIYGIGCAVG
                     DYDNDGFADIFITAVGPD"
     gene            complement(572..1417)
                     /locus_tag="VD968_16910"
     CDS             complement(572..1417)
                     /locus_tag="VD968_16910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16121.1"
                     /translation="MSATTVTPHTAAQAGEAKQPRLFGIDSRFVAPIFITFILLVGQL
                     SYGILESYPKTALAILTAVAVELAAGRYFAGKWPHLASAYITGISVGILTRSPFAWPF
                     ALCSAVSILSKYVIRAGGRHVWNPSNFGICMMLLVAPWAYSTLTVQWGNNLWPVFIIW
                     ALGLVITYHVKRLHITLVYVASFFAFAALRSLLTGHAFAAEAAPITGPMYQLFIFFMI
                     TDPKTTVRSSRLAQAGVAFAVAFVEMLLRLFENVHAPYYALFIVGPAANLIEIYLLRR
                     KARAA"
     gene            complement(1452..2009)
                     /locus_tag="VD968_16915"
     CDS             complement(1452..2009)
                     /locus_tag="VD968_16915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16122.1"
                     /translation="MRTGAHGMMRVAFFAAAACIAVLGCRAEALAQAKGEGVKLSVAA
                     SGASLDPRSSAKATVKIENRARGEVLLKQNRHVFFSLDVYGKGLGACARGDCFVAYFR
                     IAEDRAIKRGETYTLEVELADLYWRDAAAEIDTKFPKNMAEVIKPGDYYLHAALSVQR
                     AGTRRSAPVFIEARSPRRIVKVGQP"
     gene            complement(2012..>2404)
                     /locus_tag="VD968_16920"
     CDS             complement(2012..>2404)
                     /locus_tag="VD968_16920"
                     /inference="COORDINATES: protein motif:HMM:NF019229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASPIC/UnbV domain-containing protein"
                     /protein_id="HYE16123.1"
                     /translation="ARDTYDGRSVALADLWNRGVLDVVVANQRGPLLIYKNTAAPENA
                     WIAFELEGSASNRSAIGAQVRVHWNGQQQLQEVSGGNGFCAQNQRRLHFGLGRGARPE
                     RAVIRWPSGKIQTIEAPEPGKVHRIREA"
BASE COUNT          394 a          774 c          828 g          408 t
ORIGIN      
        1 tggtcggggc cgacggccgt gatgaagatg tcggcgaagc cgtcgttgtc gtagtcgccg
       61 acggcgcagc cgatgccgta gatgacctgg gcgagccccg cctcgcgcgt cacgtcgcgg
      121 aaggtgccgt cctggttgtt gcggtagagc gccgaggtag tctgcgcgcc gcgctcgccg
      181 ggccagcccg tcgagttgac gaggaggatg tcctgccagc cgtcgttgtc gtagtcgagg
      241 aaggcggcgc ccgagcccat cgtctctggc aggtacttct tgccggcggc gccgctgttg
      301 tggcggaagc gaatgcctgc ctcggccgtc acgtccgtga actcgacggg gccggagggg
      361 cgcggctgcg gcgtgggcgt cgccgagggg gtcgcgcccg gagcggcgcc cgccgccgcg
      421 tcggcggcgg cctgctcctg cggcgagagc gtcgcgttcg tcgtggggtc ttgcttgcag
      481 cccgcgagaa gaatcagaac gcagaagccg gcgaggcgca gcgtgcgagg gcgcatcttt
      541 ccttttcccg ccttgattgt tatagaccgc atcacgccgc ccgcgccttc cgtcgcagca
      601 ggtaaatctc gatcaggttc gccgccgggc ctacgatgaa gagcgcgtag tagggcgcgt
      661 ggacgttctc gaagaggcgg aggagcatct cgacgaaggc cacggcgaag gccacgcccg
      721 cctgcgcgag ccgcgaggag cgcaccgtcg tcttcgggtc tgtgatcatg aagaagatga
      781 agagctggta catcggcccc gttatcggcg ccgcctcggc cgcgaaggcg tggccggtca
      841 gcaggctccg cagcgcggcg aaggcgaaga acgacgcgac atagacgagc gtgatgtgga
      901 gcctttttac gtggtaagtg atgacgagcc cgagcgccca gatgatgaag accggccaga
      961 ggttgttgcc ccactgtacc gtgagcgtcg agtaggccca cggcgcgacc aacagcatca
     1021 tgcagatgcc gaagttcgag gggttccaga cgtggcgccc tccggcgcgt atgacgtact
     1081 tcgagaggat ggagacggcg ctgcacagcg cgaacggcca cgcgaagggc gagcgcgtca
     1141 ggatgcctac gcttatgccg gtgatgtacg cgctcgccag gtgcggccac ttgccggcga
     1201 agtagcggcc ggcggcgagc tcgaccgcga cggccgtcag tatcgcgagc gccgtcttcg
     1261 ggtagctctc cagtatgccg tagctcaact gcccgacgag cagtatgaag gtgatgaaga
     1321 tgggggcgac gaagcggctg tcaatgccga acagcctcgg ctgcttcgcc tcgcccgcct
     1381 gcgccgccgt gtgtggagtg accgtcgttg cgctcatcca gaacctcgaa cacgaatcaa
     1441 ctactaatct tttacggttg gccgaccttc acaatcctgc gcggggagcg cgcctctata
     1501 aaaacgggcg cgctccggcg tgtccccgca cgctggacgc tcagggcggc gtgcaggtaa
     1561 tagtcgccgg gctttatcac ctctgccatg ttcttcggga acttcgtgtc aatctcggcg
     1621 gcggcgtcgc gccagtacag gtcggccagc tcgacctcta acgtgtaagt ctcgccgcgc
     1681 ttaatcgccc tgtcttcggc gatgcggaag taggccacga agcagtcgcc gcgcgcgcac
     1741 gcgcccaagc ccttcccgta aacgtcaagg ctgaagaaga cgtggcggtt ctgcttgagc
     1801 agcacttcgc cgcgcgcccg gttctcgatc ttcaccgtgg ccttcgccga cgacctcggg
     1861 tcgagagacg cgccggaggc cgcgacggag agcttgacgc cctcgccctt cgcctgcgcc
     1921 aacgcctcag cccggcagcc gaggacggcg atgcacgcgg cagccgcgaa gaacgccact
     1981 ctcatcatgc cgtgcgcacc tgttctcatg ctcaggcttc tcttatgcga tgaaccttac
     2041 cgggctcggg cgcctcgatg gtctgaatct tgcccgaggg ccagcgtatg acggcgcgct
     2101 cggggcgcgc gccccggccg aggccgaagt gtaggcggcg ctggttctgc gcgcaaaagc
     2161 cgttgccgcc cgacacctcc tgcaactgct gttgcccgtt ccagtgaacg cgaacctgcg
     2221 cgccgatggc gctgcggttg ctcgccgagc cctcaagctc gaaagctatc caagcgttct
     2281 caggcgcggc ggtgttcttg tagatgagga gcggcccccg ctggtttgca accacgacat
     2341 cgagcacgcc gcggttccag aggtcagcga gagcgacgga gcggccgtcg tatgtgtcgc
     2401 gcgc
//
LOCUS       DASPKR010000633         7333 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1522726, whole genome shotgun sequence.
ACCESSION   DASPKR010000633 DASPKR010000000
VERSION     DASPKR010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7333)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7333
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1522726"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1189
                     /gene="gatB"
                     /locus_tag="VD968_16925"
     CDS             <1..1189
                     /gene="gatB"
                     /locus_tag="VD968_16925"
                     /inference="COORDINATES: protein motif:HMM:NF004012.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HYE16124.1"
                     /translation="QYDRPFSERGELEILTAERDEAGHAREWRPMRIRITRLHLEEDA
                     GKNVHEGLPETDRFSYVDLNRAGTPLAEIVTEPDFRTSWEAYDYVNHVRRALQWVAAS
                     DADMEKGNLRCEANVSVRRTGEGFGTKVELKNLNSVRFMQRAIEFEIERQIALIESGG
                     RVTQETRLWDEREGRTRVMRSKEEAHDYRYFPEPDLQPLVVTAEWIEGVRREMPELPD
                     ARRKRFTEQYELSFNDASLLVRDRELADFYERAAAASNARGAANWLKGELLRELDAAG
                     TGADASPVSPEELGALVRAVEEGRISGKQGKDVLVEMFKTGKGADAVIEEQGLAQVSD
                     AGELEKIIADVLAASPQQLAAYRGGKETLFGFFVGQVMKASKGKANPKVVNELLKEKL
                     KAG"
     gene            1193..1912
                     /locus_tag="VD968_16930"
     CDS             1193..1912
                     /locus_tag="VD968_16930"
                     /inference="COORDINATES: protein motif:HMM:NF005594.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE16125.1"
                     /translation="MDYRGKTAIVTGSTKGIGRAIAEALVRDGVNVCVSGRSIEEVSE
                     TVRELDSLGEGSATGAACDVRVNEEAEALVAHTVEEFGGVDVLVNNAGIGIFKTVEET
                     SPEEFRAVLETNLFGVFYCCRAAIPEMKRRGGGYIINISSLAGANPHPRMSAYNASKF
                     GLNGFSEALMQEVRHDDIKVSYVMPGSVNTAFGGDEPGEEKAWQLQPEDVARVVTDLL
                     RHDARSLPSRVELRPSKPPRK"
     gene            1918..2547
                     /locus_tag="VD968_16935"
     CDS             1918..2547
                     /locus_tag="VD968_16935"
                     /inference="COORDINATES: protein motif:HMM:NF025595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4337 domain-containing protein"
                     /protein_id="HYE16126.1"
                     /translation="MEPADQIAEARSRAGESDSDKFNDRAAIIIAVMAMLLAITSLGG
                     GNAAEDIMNYNIRASDTWAFYQAKIIRQTSNRLAADALEAELRASQNLLPEARAFLES
                     RIDEYRKTAERYEDEPDREDPTNPLKGEGRKQLTARARDFESQRDRAQKQDPNFDFAE
                     ALFQIAIVLASVAILAGSRMILRLSVVVGVLAALLMINGYFLFLPDLLG"
     gene            2560..3009
                     /gene="dtd"
                     /locus_tag="VD968_16940"
     CDS             2560..3009
                     /gene="dtd"
                     /locus_tag="VD968_16940"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: protein motif:HMM:TIGR00256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HYE16127.1"
                     /translation="MRAVLQRVTRASVRVAGETVGEIGRGLVVLLGVGRDDSERDALY
                     LAEKTASLRVFDDAEGRMNLSVAEAGGALLVVSQFTLHGDARKGRRPSWFDAAQPEAA
                     EPLYERFVAESRRLVGRVETGSFRQMMEVELINDGPVTILLDSKKLF"
     gene            3037..3705
                     /locus_tag="VD968_16945"
     CDS             3037..3705
                     /locus_tag="VD968_16945"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYE16128.1"
                     /translation="MSKKQALFAALLSCLISAAACGGGGSQTNDYDAGGEGKAKADVK
                     KGVKPEPDAEAAVIEVVSGTDSYGTIVIELYPNIAPKMVERFKTLAREGFYNGTAFHR
                     VEPEVIQGGDPNSKNDDPFDDGGGDSPYPDLPAEFSDIPYEPGVVGAARTNDVNTANC
                     QFFITLARVPRWDNQYTVFGRVIKGLGDARIISGAPTRAGSKNPDPKIVMKSVALQPR
                     ANFQ"
     gene            complement(3813..4211)
                     /locus_tag="VD968_16950"
     CDS             complement(3813..4211)
                     /locus_tag="VD968_16950"
                     /inference="COORDINATES: protein motif:HMM:NF039411.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6335 family protein"
                     /protein_id="HYE16129.1"
                     /translation="MPKKRPEEFEYLSNNPDVVPDPEIEQFMEEEIARAPKDPGQLAQ
                     RLRNHTAASPSDAGGDLDASWEDVNDSGTESVAGDNPTPDQSLVEENAAAVGVSFEDN
                     EELDVLDKIERRDRNRYELDPRSKTEDNSI"
     gene            4460..>7333
                     /locus_tag="VD968_16955"
     CDS             4460..>7333
                     /locus_tag="VD968_16955"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF009520.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase"
                     /protein_id="HYE16130.1"
                     /translation="MPHNLFNTLQAFTTGEGGEGRFYSLPQLEKEGVGPVSRLPVSIR
                     IVLESVLRNFDGRVVEEDDVRALANWKSEAERTEEIPFKVARVLLQDFTGVPLLVDLA
                     AMRSAVQRMGRDPEIIEPLVPVDLVIDHSVQVDFWSSPDALRLNMETEFRRNRSRYQF
                     LKWGMQAFKSFNVVPPGIGIVHQVNLEYLAPGVLEKDGVYYPDTLVGTDSHTTMINGL
                     GIVGWGVGGIEAEAGMLGQPVYFLTPDVIGVNLKGSLREGVTATDLVLRVTEMLRKAK
                     VVGKFVEFHGEGAASLHVTDRATIANMAPEYGATMGFFPVDEKTCEYMLSTGRTEEQV
                     TTLRNYYRAQNLFGVPRGGECDYSTVLELDLAEIVPSVAGPKRPQDRIELPELKDKFL
                     DLLSKPAGENGYNKSADEIARRFHSRIGISGTEAPHTLMGGGGQDTETTPQVVTTESA
                     SGLGSQSEKNTSALTEIEMMNNRPTPDRVVEIPAEEFPEARVDLGHGDVLIAAITSCT
                     NTSNPSVMMAAGLLAKKAVERGLSVRPSVKCSLAPGSRVVTEYLEKAGLQPYLNRLGF
                     NIVGYGCTTCIGNSGPLDPRIESVVNDHDLVAASVLSGNRNFEARVHQSIRANFLMSP
                     PLVVAFALAGRVNVDLSSEPLGRGKDGEDVYLKDIWPTLEEVGGVLQLATNPETYRRL
                     YSNFAEANPLWNEIPSVAGLVYDWESQSTYIQEPPYFEKFSMEPGTFCDIIGARPLAI
                     FGDSVTTDHISPAGAIKPKSPAGRYLMLRGVEVQDFNSYGSRRGNHQVMLRGTFANVR
                     IKNLMVPGTEGGVTVLQPVGEQMSIYDASVNYQAAGLPLVVIAGQEYGTGSSRDWAAK
                     GTKLLGVRAVVAQSFERIHRSNLVGMGVLPLQFKEGTSAATLRLDGTEVFDITGLENG
                     TIRPRQDVTLVVRRANGETVEAPVTLRIDTPIEVDYYQHGGILP"
BASE COUNT         1340 a         2430 c         2432 g         1131 t
ORIGIN      
        1 gcagtacgac cgcccgttct ccgagcgcgg cgagcttgag atactgacgg ccgagcgcga
       61 cgaggcgggc cacgcacgcg agtggcggcc gatgcggatt cgcatcacgc ggctgcacct
      121 cgaagaggac gccggcaaga acgtccacga agggttgccg gagacggatc gcttctccta
      181 cgtcgatctc aaccgcgccg gcacgcccct cgccgagatc gtcaccgagc ccgacttccg
      241 cacttcgtgg gaggcttacg actacgtcaa ccatgtgcgc cgcgcgttgc agtgggtcgc
      301 ggcgtcggac gccgacatgg agaaggggaa cctgcgctgc gaggccaacg tctcggtgcg
      361 gcgcacgggc gagggcttcg gcacgaaggt cgagctgaag aacctgaact cggtgcgctt
      421 catgcagcgg gcgattgagt tcgagattga gcggcagatt gcgctcatcg agtcgggcgg
      481 gcgggtgacg caggagacgc gcctctggga cgagcgcgaa ggccgcacgc gcgtgatgcg
      541 ctcgaaggag gaggcgcacg actaccgcta cttccccgag ccggacttgc agcctctcgt
      601 cgtaacggcc gagtggatag agggcgtgcg ccgcgagatg ccggagctgc cggacgcgcg
      661 ccgcaagcgc ttcacggagc agtacgagct ttcttttaac gacgcctcgc tcctcgtgcg
      721 cgaccgcgag ctcgctgact tctacgagcg cgcagcggcc gcctcgaacg cgcgcggcgc
      781 tgcgaactgg ctcaagggcg agctgctgcg cgagctcgac gccgcaggga caggcgccga
      841 cgcctcaccc gtctcgccgg aggagctcgg cgcgctcgtg cgcgcggtcg aggaggggcg
      901 aatcagcggc aagcagggca aggacgtgct cgtcgagatg tttaagacgg ggaagggcgc
      961 cgacgcggtc atcgaggagc agggcctcgc gcaggtgagc gacgcgggcg agctcgaaaa
     1021 gataatcgcc gacgtgctcg ccgcgagccc gcagcagctc gccgcctacc gcggcggcaa
     1081 ggagacgctc ttcggcttct tcgtcgggca ggtgatgaag gcgtcgaagg gaaaggctaa
     1141 cccgaaggtc gtcaacgaac ttctgaaaga gaagctgaag gcggggtaaa cagtggatta
     1201 cagggggaag accgcaatcg tcacggggag cacgaagggc atcgggcgcg ccatcgcgga
     1261 ggcattagtg cgcgacggcg tgaacgtctg cgtgagcggg cggagcatcg aggaggtctc
     1321 tgagaccgtc cgcgagctcg actctctggg cgaaggctcg gccaccggcg cggcctgcga
     1381 cgtgagggtg aacgaggagg ccgaggcgct cgtcgcccac acggtcgagg agttcggcgg
     1441 cgttgacgtg ctcgttaaca acgcgggcat aggtatattc aagacggtcg aggagacttc
     1501 gccggaggag ttccgcgcgg tgttggaaac taacctgttc ggcgtcttct actgctgccg
     1561 cgccgccatc cccgagatga agcggcgcgg gggcggctac atcataaaca tctcctcgct
     1621 cgcaggcgcc aacccgcacc cgcgcatgtc cgcctacaac gcctcgaagt tcggcctgaa
     1681 cggcttcagc gaggccctca tgcaggaggt caggcacgac gacataaagg tgagctacgt
     1741 catgcccggc tcggtcaaca ccgccttcgg aggcgacgag ccgggcgaag agaaggcgtg
     1801 gcagcttcag cccgaggacg tggcgcgcgt cgtcactgat ctgctccgcc acgacgcgcg
     1861 cagcctcccc agccgagtcg agctgcggcc gagcaagccg ccgaggaaat agcccgaatg
     1921 gaaccagcag accagatagc cgaggcgcgc tcccgcgctg gcgagagcga ctcggacaag
     1981 ttcaacgacc gtgcggccat catcatcgcc gtgatggcga tgctgctcgc catcacgagc
     2041 ctcgggggcg ggaacgccgc cgaggacata atgaactaca acataagggc cagcgacacc
     2101 tgggccttct accaggcgaa gatcatccgc cagacctcga accgccttgc cgctgacgcc
     2161 ctggaggccg agctaagggc cagccagaac ctgctgcccg aggcgcgcgc cttcctcgaa
     2221 tcgcggattg acgagtaccg caagacggcc gagcgctacg aggacgagcc ggacagggaa
     2281 gacccgacta acccgcttaa aggggaaggc cgtaagcagt tgactgcgcg cgcgcgcgac
     2341 ttcgagtcgc agcgcgaccg cgcgcagaag caagacccta acttcgactt cgccgaggcg
     2401 ctatttcaga ttgcgattgt gctcgcctcg gtcgcgatac tcgcgggctc gcgcatgatc
     2461 ctgcgcctct ccgtcgtcgt cggggtgttg gccgcgctcc tgatgataaa cggctacttc
     2521 ctcttcctgc ccgacctcct gggctgaggc cgcccgcgta tgcgtgccgt gctccagcgc
     2581 gtgacgcgcg cgagcgtccg ggtcgcgggc gagaccgtgg gggagatagg ccgcggcctc
     2641 gtagtgctcc tcggcgtcgg ccgcgacgac tcggagcgtg acgcgctcta cctcgcggag
     2701 aagaccgcct cgctccgcgt attcgacgac gcggaggggc gcatgaattt gtctgtggcc
     2761 gaggcgggcg gcgccctgct cgtcgtctcg cagttcaccc tgcacggcga cgcgcggaag
     2821 gggcggcggc cttcgtggtt cgacgccgcg cagcccgagg cggccgagcc gctctacgaa
     2881 cggttcgtcg cggagtcgcg gcgcctcgtc gggcgcgtcg agaccggaag cttccggcag
     2941 atgatggagg tcgagctcat aaacgacggc cccgtcacca tcctgctcga cagcaagaag
     3001 ctcttttgac tctcgtttat tcatcggagg cgaagtgtga gtaaaaagca ggcgctcttt
     3061 gcggcgctcc tttcgtgctt gatttccgcg gcggcgtgcg gcggcggggg ctctcagacg
     3121 aacgactacg acgctggagg cgaaggtaaa gccaaagccg acgtgaaaaa gggcgtcaag
     3181 cccgagcccg acgccgaggc ggccgtgata gaagtcgtga gcgggacgga ttcctacggc
     3241 actatcgtca tcgagctcta cccgaacatc gccccgaaga tggtcgagcg cttcaagacg
     3301 ctcgcgcgcg agggcttcta caacggcacg gccttccacc gcgtcgagcc tgaagtcata
     3361 cagggcggcg acccgaactc gaagaacgac gaccctttcg acgacggcgg gggcgactca
     3421 ccctacccag acctgccggc cgagttcagc gacatccctt acgagccggg cgtcgtcggc
     3481 gccgcgcgca cgaacgacgt gaacaccgcc aactgccagt tcttcattac gctcgcgcgc
     3541 gtgccgcgct gggacaacca gtacacggtc ttcggccgcg tcataaaggg cctcggcgac
     3601 gcgcgcatca tctccggcgc ccccacccgc gccggctcca aaaaccccga ccccaagatc
     3661 gtcatgaaga gcgtcgcgct ccaaccccgc gcgaacttcc agtgaggtgt tagacgtcag
     3721 atgccggatg ttagaaatgc ttagggccgg cggggtcatc aacccgccgg cccctcttca
     3781 ctaacaccca acacccggca tccagcatcc agctagatcg agttgtcctc ggtcttggag
     3841 cgcgggtcta gctcgtagcg attgcggtcg cggcgctcta tcttgtcgag cacgtctagc
     3901 tcctcgttgt cctcgaagct gacgccgacg gccgcggcgt tctcctcgac gagcgactgg
     3961 tcgggggtcg ggttgtcgcc cgcgaccgac tcggtgccgc tgtcgttcac gtcctcccac
     4021 gaggcgtcga ggtcgccgcc cgcgtcggag ggcgaggccg cggtgtggtt ccggaggcgc
     4081 tgcgcgagct gcccggggtc tttcggcgcg cgcgcgatct cctcctccat gaactgctcg
     4141 atctccgggt ctggaaccac gtccgggttg ttgctcaggt actcgaactc ctccggcctc
     4201 ttcttcggca tcgcaagccc tccgctaacc acgattgtcc cgccgctagt cttaaagtgc
     4261 ggccaatata acccatgact ccgaacttcg gcaaacctcg atgccgcggg catgagaggg
     4321 tgttgcttga cgattgtggg gcgcgaactt aaacttgaag ttaaattgac ggcggtacaa
     4381 ctcagtcagt cagaactccc cggcgtcggg ggcgggttgc gggccgaggc gcgcggggcg
     4441 gccacatctg agagctctta tgccacacaa tctcttcaac acactgcaag cattcacgac
     4501 gggcgagggc ggcgaggggc gtttctactc gctgccgcag ctcgaaaaag agggcgtcgg
     4561 gccggtctcg cggctgccgg tctcgatacg gatagtgctc gaatcggtgc tgcgcaactt
     4621 cgacgggcgc gtcgtcgagg aggacgacgt gcgcgccctc gccaactgga agtcggaggc
     4681 cgagcggacg gaggaaatac ccttcaaggt cgcgcgcgtg cttttgcagg acttcacggg
     4741 cgtccctctc ctcgttgacc tcgcggccat gcgctcggca gtgcagcgca tggggcgcga
     4801 ccccgagata atcgagccgc tcgtccccgt agatctggtc attgaccact ccgtgcaggt
     4861 tgacttctgg tcgagcccgg acgctctccg gctcaacatg gagacggagt tccgccgcaa
     4921 ccgctcgcgc taccagttcc tcaagtgggg catgcaggcg ttcaagagct tcaacgtcgt
     4981 gccgcccggc ataggcatcg tccaccaggt caacctcgaa tacctggcgc ccggcgtctt
     5041 ggagaaggac ggcgtctatt acccggacac gctcgtcggc accgactcgc acacgacgat
     5101 gattaacggg ctcggcatcg tcggctgggg cgtcggcggc atagaggccg aggccggcat
     5161 gctcggccag cccgtctatt tcctcacgcc cgacgtcatc ggcgtcaacc tcaagggcag
     5221 tctgcgcgag ggcgtgacgg cgacagacct cgtgctgcgc gtcacggaga tgctgaggaa
     5281 ggcgaaggtc gtcggcaagt tcgtcgagtt ccacggcgag ggcgcggcga gcctgcacgt
     5341 cacagaccgc gcgacgattg ccaacatggc gcccgagtac ggcgcgacga tgggcttctt
     5401 ccccgtggac gagaagacct gcgagtacat gctctcgacg ggccgcacgg aggagcaggt
     5461 cacgacactt cggaactact acagggcgca gaacctcttc ggcgtgccgc gcggtggcga
     5521 gtgcgactac agcaccgtcc ttgagctcga cctcgccgag atagttccga gcgtcgcggg
     5581 gccgaagcgc ccgcaggata ggatcgagct gcccgagctt aaagacaagt tcctcgacct
     5641 gctctcgaag cccgcgggcg agaacggcta caacaagtcg gcggacgaga tagcacggcg
     5701 cttccactcg cgcatcggca tcagcggcac cgaagcgccg cacacgctga tgggcggggg
     5761 cgggcaggac acggagacga cgccgcaggt cgtaacgacg gagtcggcga gcgggctcgg
     5821 ctcgcagagc gaaaagaaca ccagcgcgct gacagagata gagatgatga acaaccggcc
     5881 gacgcccgac cgcgtcgtcg agatcccggc cgaggagttc cccgaggcgc gcgttgacct
     5941 cggccacggc gacgtgctca tcgcggccat cacctcctgc acgaacacct cgaacccttc
     6001 ggtgatgatg gcggcggggc tgctcgcaaa gaaggccgtc gagcgcggcc tgagcgtgcg
     6061 gccgtccgtc aagtgctcgc tcgcgccggg ctcccgcgtc gtcacggagt acctggagaa
     6121 ggcgggcctt cagccttacc tgaaccggct cggcttcaac atcgtcggct acggctgcac
     6181 gacctgcata ggcaactccg gcccgctcga cccccgcatc gagtcggtcg tcaacgacca
     6241 cgacctcgtc gccgcgagcg tgctttccgg caaccgcaac ttcgaggcgc gcgtccacca
     6301 gagcatacgg gcaaacttcc tgatgagccc gccgctcgtc gtcgccttcg cgctcgccgg
     6361 ccgcgtcaac gttgacctct cctccgagcc gctcgggcgc ggcaaagacg gcgaggacgt
     6421 ttacctgaag gacatctggc ctacgctcga agaggtcggc ggcgtgctgc aactggcgac
     6481 caaccccgag acgtaccggc ggctctactc gaacttcgcc gaggcgaacc cgctatggaa
     6541 cgagataccg agcgtggccg ggctggttta cgactgggag tcgcagtcaa cctacataca
     6601 ggagccgccc tacttcgaga agttctcgat ggagcccggc accttctgcg acatcatagg
     6661 cgcgcgcccg ctcgccatct tcggcgactc cgtgacgacc gaccacatct cgcccgccgg
     6721 ggcgattaag cccaagtcgc ccgccgggcg ctacctgatg ctgcgcggcg tcgaggtgca
     6781 ggacttcaac tcctacggct cgcgtcgcgg caaccaccag gtgatgctcc gggggacgtt
     6841 cgccaacgtc cgcatcaaga acctcatggt gccggggacg gagggcggcg tgaccgtcct
     6901 tcagcccgtc ggcgagcaga tgagcatcta cgacgccagc gtgaactacc aagccgcggg
     6961 gctgccgctc gtcgtcatcg cgggccagga gtacggcacg ggcagctcgc gcgactgggc
     7021 cgcgaagggg acaaagctcc tcggcgtgcg cgccgtcgtc gcgcagagct tcgagcgcat
     7081 acaccgcagc aacctcgtcg gcatgggcgt cctgcccctc cagttcaagg agggcacgag
     7141 cgccgccacg ctccgcctcg acggcaccga agtcttcgac atcacgggcc tcgaaaacgg
     7201 cacaatccgc ccgcggcagg acgtgacgct cgtcgtccgc cgcgccaacg gcgagaccgt
     7261 cgaggccccc gtcaccctca ggatcgacac ccccatcgaa gtcgactact accagcacgg
     7321 cggcatcctg ccc
//
LOCUS       DASPKR010000634         8024 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1523251, whole genome shotgun sequence.
ACCESSION   DASPKR010000634 DASPKR010000000
VERSION     DASPKR010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8024)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8024
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1523251"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..363)
                     /locus_tag="VD968_16960"
     CDS             complement(<1..363)
                     /locus_tag="VD968_16960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16131.1"
                     /translation="MELHFGAPEPFEPRPDGEVRIVYTGAIYEAHYDAFRNLLAALER
                     LGRPEVKLHAYTTQRAEEMAGRGIGGPAVVFHPHLSVAEMPGVQRRADLLFLPLAVES
                     PYPDLVRTSAPVKFGEYLA"
     gene            352..726
                     /locus_tag="VD968_16965"
     CDS             352..726
                     /locus_tag="VD968_16965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16132.1"
                     /translation="MKLHAYTTQRAEELAGRGIGGPAVVFHPHLSVAEMPGVQRRADL
                     LFLPLAFESPYPDLVRTSAPVKFGEYLASRRPVLVHAPPRSFISWYCREHDCGLVVDE
                     SDPRSWPKQSGACSRTALCRPG"
     gene            711..842
                     /locus_tag="VD968_16970"
     CDS             711..842
                     /locus_tag="VD968_16970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16133.1"
                     /translation="MQARLGERGWERARADFDADEARRAFLNLLGDGARARARVTSV"
     gene            839..1858
                     /locus_tag="VD968_16975"
     CDS             839..1858
                     /locus_tag="VD968_16975"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE16134.1"
                     /translation="MTGGAQNRGVVGPLVSVIVPTYNYAAFIGEALESVRAQTYSNWE
                     CVVVDDGSTDGTREIVERWAAQDARFRYVRQERRRQAVAKNRGIAESRGEYLQFLDAD
                     DLIESRKLEEHARALEVRRDAHVIYGGARYFRTDPSRERRYSMREEDAPWMPEVSGSG
                     RGLLLELVRHNIMPINSALLRRSAVEEVGGFDEDLPLAEDWYYWLRCAARGHLFLFDD
                     APGTLALVRSHPASSSKNRRDFMEHVVRMRRKVGSLVKDAEARRLNRELMAEAEAMLG
                     IAEVTEGNLARGVRRLLSASAKRGKPRWRFKYLLCALAAPFVPRERFGEFSTNSLTRP
                     VKGQR"
     gene            1964..2920
                     /locus_tag="VD968_16980"
     CDS             1964..2920
                     /locus_tag="VD968_16980"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYE16135.1"
                     /translation="MTVELSIIIVNWNGGELLARCVESVVAAPPSVAYEVVVVDNASG
                     DDSLAMMRAGSGASALERDGRLRVVENRDNKGFGRANNQAFAMTKAPLLFLLNPDTEV
                     TPGSIDRLIATVRQGERTGGAGPRLVNSDGSLQVSVWRNPPAAWEMLVSGLRLYKLLP
                     GRLRGELLLAEFWPHDRRRDVTMLSGAAMLVRREVIEQVGGFDERFHMYGEDNEWCLR
                     IVRAGWRLVFEPEAVVLHHGAQSSMKRWGAQEKLRVQAEALLDFQRLCLPRRSRIANL
                     AAGCFLLSLQLAARRLRGRESRDVGTTLRLYAEDLRRALRGG"
     gene            2936..3946
                     /locus_tag="VD968_16985"
     CDS             2936..3946
                     /locus_tag="VD968_16985"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE16136.1"
                     /translation="MTAGGKGQSGGSDALGGVSVVVPVRDEAGSIARLLGALARQTLL
                     PAEVVVADGGSTDATRDLVREFAARAPFPVVLAEAGPALPGRGRNVGIARASREWVAC
                     VDAGTVPREGWLEELVKAARASPEALVVFGQYEAKADSFFTRSAAAVYVPPPGEPVRS
                     TASLLLHRSAWERAGRFREDLRSAEDLLFFRHLDAAGVAAVHAPRAAVEWELRPTLAS
                     TFRKFTTYSRNNMRAGLAREWQFGVARFYLLMLTGALPGLVFWRPLLLLAPLALLLRG
                     ARRLWRWHPPGTGTARRLASLFNLPRLLMVTWVNLVIDAATFYGLFQWFIHDHTGLPE
                     EE"
     gene            4022..5269
                     /locus_tag="VD968_16990"
     CDS             4022..5269
                     /locus_tag="VD968_16990"
                     /inference="COORDINATES: protein motif:HMM:NF024968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE16137.1"
                     /translation="MPVSTLYLCYFGLREPLVQTQVLPYLRELAAGGVVVNLLTFEPD
                     LEARWPPAALAEARAGLEAEGVRWLCLPYHKRPSLPATAYDILAGARLAARLVRREGV
                     QVLHARSHVPVAMAVLARALARCRVVFDVRGLLAEEYADAGVWRVGSLPYRAVKALER
                     AGLRRADAVVVLTERMREWLARQGLAAGAKVEVIPCCVDLSLYAAAGAGEEDEGGAGG
                     RFEVVYAGSVTGLYLLEEMARFFLALRERRPGAFFRVLTASPPAEAAERLRRAGLAEG
                     EFSVGAVAPRDVPRALRRARLGVSFRKATFSQIAASPTKVPEYLAAGLPVVSNAGVGD
                     TDELLARERVGVVVRELTPEGLARAAAEALALADEPGVSARCMGAARRNFDLSTVGGR
                     RYRSVYRRLEEQSAAPEALKAEG"
     gene            5373..6530
                     /locus_tag="VD968_16995"
     CDS             5373..6530
                     /locus_tag="VD968_16995"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYE16138.1"
                     /translation="MRVLAIVPSIYDRNPSQRYRIEQWEPLLRERGVEITYKPFESRE
                     LNEVLYQPGRTAEKVRLVARALARRREDVRGARAFDAVYILREAALLGPPWFERRVKR
                     SGVPFVFDFDDAVFVPYRSPSNGYLSYLKFPGKTREICRMASHVMAGNDYLADYAREV
                     NDRVTVVPTTIDTEKYTVEPRPPNSVPVIGWTGSYSTAQHLQTLAGALRRLARTERFR
                     LRVVGSPGMRLEGFEGVDVEQVAWRSETEVEDLRPLDVGVMPLPVDPWSRGKCGLKAL
                     QYMALAVPTVCSPVGVNSEIITDGVTGMLASTEDEWVEKLTLLLRSAELRERLGRAGR
                     RRVEERYSAAVQAPRVFEIFESVAREAGAPRPSPAGRGSVAVPTGGRARAE"
     gene            6536..7264
                     /locus_tag="VD968_17000"
     CDS             6536..7264
                     /locus_tag="VD968_17000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16139.1"
                     /translation="MARRSSKSRLAVLALVALMPGFLKRPLYRWLFGYRVGRGVRLGL
                     SLIDAGECEIGDGASIGHLNAVVGVGRLKVGERARIGHLNVIRGGDEVDIGRWAEIIR
                     MNEINSIPDPVVVNPTDPRFRLGDGGVVTTGHKIDFTDRVEIGRRTILGGRNSSVWTH
                     NRQRTRPVEIGELSYIGSEIRVAPGGVIPSRCIVGIGSVVTGRLEGEYNLIAGVPAKP
                     VKRLSEEDRFLIENKTRPDLPDDI"
     gene            7381..>8024
                     /locus_tag="VD968_17005"
     CDS             7381..>8024
                     /locus_tag="VD968_17005"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYE16140.1"
                     /translation="MNALLVLAALAASVGIAFAVPGEGPGAIVVCAAVAGPAALIISR
                     HQTHAEFLLQVFVGGLVLRMLIGAVIYVAQLQGFFGGDALTYDSVGIMLLQYWRGVVS
                     YSTFDASASIFLYRNWGMPYVVAAVYAVVGQNMLAVQFFNAVVGAATAPVIFLCAHHI
                     FGNLRVAKLAALFVAFFPSLVLWSSQGLKDGPIVFLLAAAMLSTLRLGERLSVR"
BASE COUNT         1195 a         2714 c         2829 g         1286 t
ORIGIN      
        1 cgcgaggtac tcgccgaact tgacgggcgc gctggtgcga accaggtcgg ggtagggcga
       61 ctcgacggcg agcggcaaaa acagaaggtc tgcgcgccgc tgcacaccgg gcatctcggc
      121 gacggagagg tgcgggtgga agaccacggc ggggccgcct atgccgcgcc cggccatctc
      181 ctctgcccgc tgagtggtgt aggcgtggag cttcacttcg gggcgcccga gccgttcgag
      241 cgcggccaga agattgcgga aggcgtcgta gtgcgcctcg taaatggcgc ccgtatagac
      301 gatgcgcacc tcgccgtcgg ggcgaggctc gaacggctcg ggcgccccga agtgaagctc
      361 cacgcctaca ccactcagcg ggcggaggag ctggccgggc gcggcatagg cggccccgcc
      421 gtggtcttcc acccgcacct ctccgtcgcc gagatgcccg gcgtgcagcg gcgcgcagac
      481 cttctgtttt tgccgctcgc cttcgagtcg ccctaccccg acctggttcg caccagcgcg
      541 cccgtcaagt tcggcgagta cctcgcgtcg cggcggccgg tgctggtgca cgcccccccc
      601 cgctccttca tctcatggta ctgccgtgag cacgactgcg gcctcgtcgt ggacgagagc
      661 gacccgcgaa gctggccgaa gcaatccggc gcgtgctctc ggacggccct ttgcaggccc
      721 ggctaggcga gcgcggctgg gagcgcgcgc gcgcggactt cgacgccgac gaggcgcgcc
      781 gcgctttcct gaatcttctc ggcgacggcg cgcgggcgcg cgcgagggtg acttccgtat
      841 gacgggcggc gcgcaaaaca ggggcgtggt ggggccgctc gtgagcgtca tcgtcccgac
      901 ctacaactac gccgccttca tcggcgaggc gctcgagagc gtccgcgcgc agacctactc
      961 gaactgggag tgcgtagtcg ttgacgacgg ctctaccgac ggcacgcgag agatcgtcga
     1021 gcgctgggcg gcacaagacg cgcgcttccg ctacgtgcgg caggagcgca ggcggcaggc
     1081 cgtcgccaag aaccgcggca tcgccgagag ccgcggcgag taccttcagt tcctagacgc
     1141 cgacgacctc atcgagagcc gcaagctcga agagcacgca cgcgcgctcg aagtgcgccg
     1201 cgacgcgcac gtcatttacg gcggcgcgcg ctacttccgc acagaccctt cgcgcgagcg
     1261 ccgctactcg atgcgcgaag aggacgcgcc ctggatgccg gaggtctcgg gctcgggccg
     1321 cggcctgctg ttggaactcg tgcgccacaa catcatgccg ataaactctg cgctgctcag
     1381 gcgctcggcc gtcgaggagg tgggcgggtt cgacgaggac ttgccgctgg cggaggactg
     1441 gtactactgg ctgcgctgcg ccgcgcgcgg ccacttattc ctcttcgacg acgcgcccgg
     1501 cactctggcg ctcgtgcgct cgcacccggc gagctcgagc aagaaccggc gcgacttcat
     1561 ggagcacgtc gtgaggatga ggcgcaaggt cggctcgctc gtcaaggacg cggaggcgcg
     1621 acgcctcaac cgcgagctga tggcggaggc cgaggcgatg ctcggcatcg cggaggtgac
     1681 cgaggggaac ctcgcgcgcg gcgtccgccg gctgctgagc gcgagcgcca agcgcggcaa
     1741 gccccgctgg cggtttaagt acctgctctg cgccctcgcc gcgcccttcg tcccccgcga
     1801 gcgcttcggc gagttctcga cgaactccct gacgcggccc gtgaaggggc agcgctgacg
     1861 ccccgcgggc ggcgagaccc caaccacgga ggcacgaagg cacgaaagag ggccgggact
     1921 ttttgtgcct tcgtgcctcc gtggtgaaaa tttttagtga cgcatgacag tcgagctgtc
     1981 aatcatcatc gtcaactgga acggcggcga gctgctcgcc cgctgcgtgg agagcgtcgt
     2041 ggccgcgccg ccttcggtcg catacgaggt ggtggtcgtt gacaacgcct cgggcgacga
     2101 tagcctggcg atgatgcgcg cgggctccgg cgcctcggcg ctggagcgcg acgggagact
     2161 tcgagtcgtc gagaaccggg acaacaaggg cttcggccgg gccaacaacc aggcgttcgc
     2221 gatgacgaag gcgccgctgc tatttctcct caaccccgac acggaagtca cgcccggaag
     2281 cattgaccgg ctgatcgcta cggtgcggca gggcgagcgc acgggcggcg ccgggccgag
     2341 gctagtcaac tcggacggct ctctacaggt gagcgtgtgg cgcaacccgc cggccgcgtg
     2401 ggagatgctg gtgtcgggct tgaggctcta caagctcctg ccggggcgcc tgcgcggcga
     2461 gctgctcctc gctgagttct ggccgcacga ccgcaggcgc gatgtgacta tgctgagcgg
     2521 cgccgccatg ctcgtccgcc gcgaggtgat agagcaggtg ggcggcttcg acgagcgctt
     2581 ccacatgtac ggcgaggaca acgagtggtg cctgcgcatc gtgcgcgccg gctggcggct
     2641 cgtcttcgag ccggaggctg tcgtgctaca ccacggcgcg cagagctcca tgaagcgctg
     2701 gggcgcacag gagaagctgc gcgtccaggc cgaagcgcta ctcgacttcc agcgcctctg
     2761 cctcccgcgc cgcagccgca tcgccaacct cgccgccggc tgcttcctcc tctcgctgca
     2821 actcgcggcg cgccgcctgc ggggccgcga gagccgcgac gtggggacga ctctccgcct
     2881 ctacgcggaa gacttgcggc gcgcgctgcg cggcggttga ggccgagcaa agaccatgac
     2941 ggccggcggc aagggacagt caggcgggag cgacgcgctc ggcggcgtga gcgtcgtcgt
     3001 ccccgtcagg gacgaggcgg gctcaatcgc gcgcctgctc ggagcgctcg cgcgtcagac
     3061 gcttctcccc gccgaggtcg tagtggcaga cggcggctcg acggacgcga cgcgcgatct
     3121 cgtgcgcgag ttcgctgcgc gcgcgccctt cccggtcgtg ctcgccgagg cggggcccgc
     3181 gctcccgggc cgcgggcgca acgtagggat tgcgcgcgcc tcgcgcgagt gggtcgcgtg
     3241 cgtggacgcg gggactgtgc cgcgcgaggg ctggcttgaa gaattagtga aggccgcgcg
     3301 cgcgtcgccc gaggcgctcg tcgtgttcgg gcagtacgag gcgaaggcgg acagcttctt
     3361 cacgcgctcg gcggctgcgg tctatgtgcc gccgccgggc gagcccgtgc gctcgacggc
     3421 gtcgctgctg ctccatcgct cggcgtggga gcgcgccggg cgcttccgcg aggacttgcg
     3481 ctcggccgaa gacctgctct tcttccgaca tctcgacgcg gcaggcgtcg ccgcggtgca
     3541 cgccccccgc gccgccgtcg agtgggagct tcggcccacg ctcgcgagca ccttccgcaa
     3601 gttcacgacc tactcacgga acaacatgag ggcgggcctc gcgcgcgagt ggcagttcgg
     3661 cgtggcccgc ttctaccttc taatgttgac gggcgcgctg cccggcctcg tcttctggcg
     3721 gccgctactg ctgctcgcgc cgctcgccct tctgctacgc ggcgcgcgcc gcctctggcg
     3781 ctggcacccg ccggggacgg ggacggctcg ccggctcgcc tccctgttta atctgccgcg
     3841 tttgttgatg gtaacatggg tgaacttagt gattgacgcg gcgacgttct acggcctctt
     3901 ccagtggttc atacacgacc acacagggct gcccgaggaa gaatgaaaga gatgtcagat
     3961 gtcagatgcc gggtgctggt ctttattgac atctagcgcc cggcatccgg catcttccga
     4021 gatgcctgtc agcaccctct acctttgcta cttcggtttg cgcgagccgc tggtgcagac
     4081 gcaggtgctc ccctacctgc gcgagctcgc ggcggggggc gtcgtcgtca acctcctcac
     4141 gttcgagccg gatttggagg cgcgctggcc gcccgcggcg ctcgccgaag caagagcagg
     4201 attggaggcc gagggcgtgc gctggctatg cctgccgtac cacaaacggc cgtcgctgcc
     4261 cgccaccgcc tacgacatac tggcgggcgc gcgcttggcc gcgaggctcg tgcggcgtga
     4321 aggggttcaa gtccttcacg cgcgctcgca cgtcccggtg gcgatggcgg tgctggctcg
     4381 cgcgctcgcg cgctgccgag ttgtcttcga cgtgcgcggc ctgctggccg aagagtacgc
     4441 ggacgcgggc gtgtggcgcg tgggctccct gccttaccgg gcggtgaagg ctttggagcg
     4501 cgcggggctc aggcgcgcag acgccgtcgt cgtgctcacc gagcgcatgc gcgagtggct
     4561 ggcgcggcag ggcctggccg cgggcgcgaa ggtcgaggtc ataccgtgct gtgttgactt
     4621 gtcgctctac gcggcggcgg gcgcgggcga agaggatgaa ggcggggccg gcggccgttt
     4681 cgaggtcgtc tatgcaggct ccgtgactgg gctctacctg ctcgaagaga tggcgcgctt
     4741 cttcctcgcg ctgcgcgagc gcaggcccgg cgctttcttc cgagtgctca cagcctcgcc
     4801 accggccgag gccgccgaga ggctcaggcg cgcggggctc gccgaagggg agttctccgt
     4861 cggcgccgtg gcgccgcgcg acgtaccgcg cgcactgcgc cgcgcgcgcc tcggcgtctc
     4921 gttccgcaag gcgaccttct cgcagatagc cgcctcgccg acgaaggtgc ctgagtacct
     4981 cgcggcgggc cttcccgttg tgagcaacgc gggcgtgggc gacacggacg agctgctcgc
     5041 gcgtgagcgc gtcggcgtag tcgtccgcga gttgacgccc gaagggctgg cgagggccgc
     5101 ggccgaagcc ctcgcgcttg ccgacgagcc gggcgtctcg gcgcgctgca tgggcgccgc
     5161 gcgcaggaac ttcgacctct ccacggtcgg cggccggcgc taccgctcag tctatcgccg
     5221 cctcgaagag cagtcggccg cgcccgaagc gttgaaggca gaaggatgaa aaagcgatag
     5281 gctgtcggca atcagctatc ggcagaagcg agacccgcgg ccggcgtttt gagctgaaag
     5341 ctcatagctg atgactgaca gcttctaaaa ccatgcgcgt tctcgcaata gtgccgagca
     5401 tctacgaccg caacccgagc cagcgctacc gcatcgagca gtgggagccg ctgctgcgcg
     5461 agcgcggcgt ggagattacc tacaagccct tcgagtcgag ggagctcaac gaggttctct
     5521 accagcccgg ccgcacggcc gaaaaggttc ggctcgtcgc gcgggcgctc gcccgccgcc
     5581 gcgaggacgt gcgcggggcg cgcgcgttcg acgcagtcta tatccttcga gaggcggcgc
     5641 tgctcggccc gccctggttc gagaggaggg taaagcgctc aggcgtcccc ttcgtcttcg
     5701 acttcgatga cgctgtcttc gtcccctacc gcagcccctc gaacgggtac ttgagctacc
     5761 tgaagttccc cggcaagacg cgcgaaatct gccgcatggc ctcgcacgtc atggcgggga
     5821 acgactacct cgccgactac gcccgcgagg tcaacgaccg cgtcaccgtc gtccccacga
     5881 cgattgacac cgagaagtac accgtagagc cccgaccgcc gaacagcgtc cccgtcatcg
     5941 gctggaccgg gagctacagc accgcccagc acctgcaaac gctcgcgggc gcgctaagac
     6001 gattggcgcg cacggagcgc ttccgccttc gcgtcgtagg ctcgccgggg atgcgtctgg
     6061 aaggcttcga gggcgtggac gtcgagcagg tcgcctggcg ctccgagaca gaggtcgaag
     6121 accttcgccc gctcgacgtg ggcgtcatgc cgctgcccgt tgacccttgg agccgcggca
     6181 agtgcggcct caaggctttg cagtacatgg cgctcgcggt gcctacagtc tgctcgcccg
     6241 tcggcgtcaa ctccgagata atcacggacg gcgtgacggg gatgctcgcc tcgaccgagg
     6301 acgagtgggt agagaagctc acgctgctgc tgcgctcggc cgaactgcgc gagcgcctcg
     6361 gccgcgccgg ccgccgaagg gtcgaggagc gctactcggc cgccgtacag gccccccgcg
     6421 tcttcgagat attcgagtcg gtcgcccgcg aggccggcgc gccccggccg tctcccgccg
     6481 gccgcggttc ggtcgctgtg ccgacgggcg ggcgggcgcg ggcggagtga agaggatggc
     6541 acgccggagc agcaaatcgc gcctcgccgt gttggcgctc gtggcgctga tgccggggtt
     6601 tttgaagcgg ccgctctaca ggtggctgtt cggctaccgc gtggggcggg gcgtgcgcct
     6661 cgggctgagc ctcattgacg cgggcgagtg cgagataggc gacggcgcct cgataggcca
     6721 cctgaacgct gtggtgggag tcggccgtct gaaggtcggc gagcgagcgc gcataggcca
     6781 cctgaacgtg atacgcgggg gcgacgaggt ggacatcggc cgctgggccg agatcatccg
     6841 catgaacgag atcaactcca tccccgaccc cgtcgtcgtc aaccccaccg acccgcgctt
     6901 ccgtttgggc gacggtggcg tcgtgacgac gggccacaag atagacttca ccgacagggt
     6961 agagataggg cgccgcacca tcctgggcgg gcgcaactcg tcggtgtgga ctcacaaccg
     7021 ccagcgcacg cggcccgtcg agatagggga gttgagctac atcggctccg agattcgcgt
     7081 ggcgccggga ggcgtgatac catcccgctg catcgtaggc attggctccg tggtcacggg
     7141 gcgcctggag ggcgagtaca acttaatcgc cggcgtcccc gccaagcccg tcaagcggct
     7201 gagcgaagaa gaccgattcc tgatagagaa caagacgaga cctgacctgc cggacgacat
     7261 atagggcggt agtcagtagc cagtagtcag taggctccgc attacggccg ctagcgctga
     7321 ctccgaacga accgccgaag agggtgttcc tactggctac ttgctactga ctacttcttt
     7381 atgaacgccc tgctcgtcct cgcggccctc gcggcctcgg tcggcatagc cttcgcagtg
     7441 ccaggcgaag gccccggcgc gatagtcgtg tgcgcggcgg tggccgggcc ggcggccctc
     7501 atcatcagcc gccaccagac gcacgccgag ttcctgctgc aagtcttcgt cggcggcctc
     7561 gtgctcagga tgctcatcgg cgccgtcatc tacgtcgcgc agttgcaggg cttcttcggc
     7621 ggcgacgcgc tcacatacga tagcgtcggc ataatgctct tgcagtactg gcgcggcgtc
     7681 gtcagctact cgaccttcga cgcttcggcc agcatcttcc tatatcgcaa ctggggcatg
     7741 ccctacgtgg tcgcggccgt ctacgccgtc gtcggccaga acatgctggc cgtgcagttc
     7801 ttcaacgccg tcgtcggcgc ggccaccgcc cccgtcatat tcctgtgcgc ccaccacata
     7861 ttcggcaacc tgcgggtggc taagctcgcc gccctgttcg tcgccttctt cccgtcgctg
     7921 gtgctgtggt cgtcgcaggg gctcaaggac gggccgatag tcttcctgct ggcggcggcc
     7981 atgctctcga cgctgaggct gggcgagcgg ctgagcgtca ggca
//
LOCUS       DASPKR010000635         3258 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_738624, whole genome shotgun sequence.
ACCESSION   DASPKR010000635 DASPKR010000000
VERSION     DASPKR010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3258)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3258
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_738624"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            145..1056
                     /locus_tag="VD968_17010"
     CDS             145..1056
                     /locus_tag="VD968_17010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16141.1"
                     /translation="MTSATATKAPRGLLLAAAVMACAALMSACAAATAPAETGRPRAD
                     GPPYPVVLTESQERRERALAGWAHVTGALPVRGGAAAVGPTPELQPVTATARSLPAGL
                     QTPPRLPRVVIENEAEQSEEETRESLRRFIAAAAPLLGVEPARVSLVEITDAPGGSKR
                     AAYRQSPFGFPLRNGYGLIEITFTPDLRVTGLTSTAVPDSDRLARSLEAVVRSVTAEA
                     AVASLANRAVTFTGPAGERQTRTLTQSDPAEARELVVFPVERSGAVAALELHLAWEIA
                     VGGGQGPPLLVYVDAVTGEQLAAVQSP"
     gene            1270..2049
                     /locus_tag="VD968_17015"
     CDS             1270..2049
                     /locus_tag="VD968_17015"
                     /inference="COORDINATES: protein motif:HMM:NF014045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HYE16142.1"
                     /translation="MAVFIDGNNLFHAARFHNIDIDYNKLLRVLLGDGRLLRAFFYTG
                     VDVGAERQQGFLLWMRRNGFRVIHKELKTFYDGTRKANLDVEIAVDMLSLAGRYDTAV
                     LVSGDEDFVYAVNAVAYKGCRVEVAGFRSNTAPKLIDVADYFIDLGEIADKVRKEPNH
                     SHRYYDNTPPQEPHHAQNNFAQQQQTGGHGPAARRPAPGPEDLMREGDDAGGADSPEE
                     ARRRQEDFDEHTAHVLSDPVIADEADQFASRSDFVRITDDQ"
     gene            2058..2438
                     /locus_tag="VD968_17020"
     CDS             2058..2438
                     /locus_tag="VD968_17020"
                     /inference="COORDINATES: protein motif:HMM:NF021486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2203 domain-containing protein"
                     /protein_id="HYE16143.1"
                     /translation="MKLFTVEEANTLLPTVRRIVERVRRAYARVSAGREAAREAAAAG
                     TERGGGGMAGGAEYVRAVTALAANANELEELGVQLKDFERGLVDFPSMRDGRVVLLCW
                     QAGEGDSLEWWHDLEAGFAGRQPL"
     gene            2468..>3258
                     /gene="lepB"
                     /locus_tag="VD968_17025"
     CDS             2468..>3258
                     /gene="lepB"
                     /locus_tag="VD968_17025"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:NF021981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HYE16144.1"
                     /translation="MAVTLEREGKPKGDETGPGGEGRDAGPPHGLLREYFESGVVTVI
                     MALFFMTFVAQAAEVPSASMENTIFVGDRFLINKFIFAPGPSLPFLPQREIRRGDIIV
                     FKYPSDIGTDDTVSRDRVERYKTLFIKRVIGLPGETVEVRGADVFVNGQRLPEHRVTA
                     LDPQLGNDKAELKDLRQPARGDEPYTVFYSQGTLSGTDRPSSEFRYSVGKPFRIPENE
                     YFVMGDNRDNSKDSRVWGTVPRHLVVGRAMFVIWSYDESAQRDPGL"
BASE COUNT          559 a         1164 c         1051 g          484 t
ORIGIN      
        1 gactcgcccg cggccgagcc cgtcatcggg agatcgtcgt caacccccaa agccattccc
       61 cttcgagaga cctctagaga cacgcaagac gttcttgagt ataatccctc ccgccctttc
      121 caccgacact aaatttaaag accgatgact tcagcgacag caacgaaggc cccgcgcgga
      181 ctgcttctcg ccgccgccgt catggcctgc gccgcgctga tgtccgcctg cgcggcggcg
      241 acggcgccgg ccgagaccgg aaggccgcgc gcagacgggc cgccctaccc cgtcgtgctg
      301 acggaatcgc aggagcggcg cgaaagggct ctggccggct gggcgcacgt cacgggcgcg
      361 ctgcccgtgc gcggcggcgc cgccgccgta ggcccgacgc ccgagcttca gcccgtgacg
      421 gcgacggcgc gttcgctccc cgccggtctc caaactccgc cgcggctccc cagggtcgtc
      481 atcgaaaacg aggcagaaca gtccgaggag gagacgcgcg aatcgctccg ccgcttcatc
      541 gccgcggcgg cgcccctgct cggggtggag cccgcgcgcg tctcgctcgt cgaaatcacg
      601 gacgcccccg gcggctcaaa gcgcgcggcc tacaggcaga gccccttcgg cttcccgctc
      661 cggaacggct acggcctaat cgaaatcacc ttcacgcccg acctgcgcgt gacggggctg
      721 acgagcacgg ccgtccccga ttccgacagg ctcgcgcgct cgctcgaagc cgtcgtgcgg
      781 tctgtcacgg ccgaggcggc cgtggcctcg ctcgcgaacc gcgccgtcac cttcacaggc
      841 cccgccggcg agcgacagac gcgcacgctc actcaatccg accccgcaga ggcgcgcgag
      901 ctggtggtct tccccgtcga gcggtcgggg gcggtggccg ccctcgagct tcacctcgcg
      961 tgggagatcg ccgtcggcgg cgggcagggg ccgccccttc tcgtttacgt tgacgcggtg
     1021 acgggcgagc agctcgccgc cgtccagtcg ccctgaatgg agcgcgccca ctaccggaat
     1081 ttcacgtttt gtggttgaat acctcgtcgg ccgcggcccg cgcccgggag ttcggaggcg
     1141 cggggccgga gcgcggtcgc gcagttgatg tttgatattt cgtgaatcga gaaccctaac
     1201 ggagtgctta atcgcatgca gtatgatccg acgaacaaca tttcctggca gttaggttac
     1261 agggggagag tggcggtttt cattgacggc aacaaccttt ttcacgcggc tcggttccac
     1321 aacattgaca tagactacaa caagctcctg cgcgtcctcc tgggcgacgg gaggcttctg
     1381 cgtgccttct tctacacggg cgttgacgtg ggggcggagc gccagcaggg cttccttctc
     1441 tggatgcgcc gcaacggctt ccgcgtcatt cacaaggagc tgaagacctt ctacgacggc
     1501 acgcgcaagg ccaacctcga tgtcgagata gccgttgaca tgctcagcct cgccggccgc
     1561 tacgacacgg ccgtgctcgt atcgggcgac gaggacttcg tctatgccgt caacgccgtc
     1621 gcctacaagg gctgccgcgt cgaggtcgcc ggcttccgct ccaacacggc gccgaagctc
     1681 atagacgttg ccgactactt catagacctc ggcgagatag ccgacaaggt gcgcaaggag
     1741 ccgaaccact cgcaccgcta ctacgacaac accccccccc aagagccgca ccacgcgcag
     1801 aacaacttcg ctcagcagca gcagaccggc ggccacgggc cggccgcgcg ccgccccgcc
     1861 cccggccccg aagacctcat gcgcgagggc gacgacgcgg gcggcgcaga ctcgcccgaa
     1921 gaggcgcgcc gccgccagga ggacttcgac gagcacaccg cccacgtcct ctccgacccc
     1981 gtcatcgccg acgaggcgga tcagttcgcc tcccgctcag acttcgtgcg catcaccgac
     2041 gaccagtaag ctgtgagatg aagctgttca ccgtcgaaga ggcaaacacg ctgctgccga
     2101 ccgtgcgccg tatcgtcgag agggtaaggc gcgcctacgc gcgcgtctcg gccgggcgcg
     2161 aggcggcgcg cgaggcggcc gctgccggca ccgagcgcgg cggcggcggg atggccggcg
     2221 gcgccgagta cgtaagggcc gtcacggcgc tcgccgcgaa cgccaacgag ctcgaagagc
     2281 tgggcgtcca gctaaaggac ttcgagcgcg ggctcgttga cttcccgtcc atgcgcgacg
     2341 ggcgcgtggt gctcctgtgt tggcaggccg gcgagggcga cagcctggag tggtggcacg
     2401 acctcgaagc gggcttcgcc ggcaggcagc cgctctgaaa ctgccggcgg gcggggaaga
     2461 ctttccaatg gccgtaacgc ttgagcgaga gggaaagccg aagggcgacg agacggggcc
     2521 gggcggcgag ggccgcgacg cggggccgcc gcacgggctc ctgcgcgagt acttcgagtc
     2581 gggcgtcgtc accgtcatca tggccctctt cttcatgaca ttcgtcgcgc aggcggcgga
     2641 agtcccctcg gcctcgatgg agaacaccat cttcgtcggc gaccgcttcc tcatcaacaa
     2701 gttcatcttc gcgcccggcc cctcgctccc cttcctgccg cagcgcgaga tacgccgcgg
     2761 cgacatcatc gtcttcaagt acccgtccga cataggcacg gacgacaccg tctcgcgcga
     2821 ccgcgtcgag cgctacaaga cgctcttcat caagcgcgtc ataggcctgc cgggcgagac
     2881 tgtcgaggtg cgaggggcgg acgttttcgt caacggccag cggctgcccg agcaccgcgt
     2941 cacggcccta gacccgcagc tcggcaacga caaggcagag cttaaagacc tccgccagcc
     3001 ggcgcgcggc gacgagccct acaccgtctt ctactcgcaa ggcacactct ccgggacaga
     3061 ccgcccctcc tcggagttcc gctacagcgt cggcaagccc ttccgaatac ctgagaacga
     3121 gtacttcgtg atgggcgaca accgcgacaa cagcaaggac agccgcgtct gggggactgt
     3181 gccgcgccac ctcgtcgtcg gccgcgcaat gttcgtcata tggtcttacg acgagagcgc
     3241 gcagcgcgac cccggcct
//
LOCUS       DASPKR010000636        11131 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1262477, whole genome shotgun sequence.
ACCESSION   DASPKR010000636 DASPKR010000000
VERSION     DASPKR010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11131)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11131
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1262477"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2646
                     /locus_tag="VD968_17030"
     CDS             <1..2646
                     /locus_tag="VD968_17030"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HYE16145.1"
                     /translation="LDKLEYDLRQNVVSHMRSKGYLEARTGEPQVEEVSQTSISLTFD
                     VDEGDRVRVVDIQFEGNTVFSDGDLRGSMKLVKEAGLISRFKGQDILHLEKLEYDLGR
                     NVVGHMRSKGYLEARTGEPRVEGVGPRRTGFPVLPLPLLSSVDEGLRITVPVTEGKLY
                     RLGEIKIEGNSIYSEDVIRQVIGLRPGEIANAQRIVKALSEDLDKLYGRAGFIQYEYD
                     INPTFKPDPQRPQEGIADFTITITEGKQFSLRRLEFAGNTYTRDNVLRREVAVNEGDI
                     FDQTLWEYSVLRLNQLGFFDPIDKEKDANFRTDEERGEVEIELRVAERGRNQIAFNGG
                     VSGIGGSFFGLEYSTNNLLGRGESLSFQFAFGNRQRSILFSFTEPYVKDRPISIGFTA
                     FTESRKFFGEGTILSENLAALAGITNPIDFFNVSEENLFTQNTTGGSLFASAPLWEFW
                     KPRSSRLVRIARSSRIGLSYSISQSSIEDPPVNEQDDRSSFIPVVFDQPSILTSRVTP
                     SFVFDTRNGSIDPTEGQQVTFQLAFAGAGGDVRTYQPSVSFMRFMPVRRKRSENPEVF
                     GFRLVAGHVGSFGITEQVRRAQETSLSFINGVPIYERFFLGDEFSIRGYNVRSIGPVV
                     PLEVYVTTRGVRASAVPLGDEVVDIPGLSESLRERLATLGTFTGPTGANPVIVDRSFR
                     LLGGDTQLLGNFEYRVPIFGPLQLAAFADIGSAFNLRTKTDQIFSTEFLPDQPFISRL
                     GGINGLVRLRNPQLAASQLTGALLVQGDRLLTRDELQALVGAGSFDPATGLPLGVQSV
                     FLRATPTDADPTAGVQTNTVARISQSLFSKLGDYRSSLGAELRIQLPVVNVPFRFIYA
                     YNPNAKVDFLGEKRRTFRFSIGRTF"
     gene            2731..3363
                     /locus_tag="VD968_17035"
     CDS             2731..3363
                     /locus_tag="VD968_17035"
                     /inference="COORDINATES: protein motif:HMM:NF015871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HYE16146.1"
                     /translation="MKVIRNIAAAFALAAFAAVSASAQQPAANRPAAPATGAPAANVP
                     DGKIAIIDTEEFANPQSGIARLINAFNTMEREFKPRRDEITTLKTRYDAIVKEVQDTQ
                     KVADEKTLAAKADQAETLKIEMEQKQQAGQRAYEKRWRELSDPINRDINAALQNYARS
                     RGITLVIDISKMGGFVMVVNDQVDITKAFIADYNQRNPASAAAAAPAPNR"
     gene            3448..3900
                     /gene="fabZ"
                     /locus_tag="VD968_17040"
     CDS             3448..3900
                     /gene="fabZ"
                     /locus_tag="VD968_17040"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: protein motif:HMM:TIGR01750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HYE16147.1"
                     /translation="METVLDILAIQEILPHRYPFLLVDRIVEITPGERIVGVKQVTIN
                     EPFFQGHFPGAPVMPGVLVVEAMAQVGAVYALRQIEDRDRKLVLFSGIDNARFRRPVV
                     PGDTLVLTVTPVRVGGRVQRMRGEAHVAGQLAAEADIMSVVADRKAVK"
     gene            3987..4766
                     /gene="lpxA"
                     /locus_tag="VD968_17045"
     CDS             3987..4766
                     /gene="lpxA"
                     /locus_tag="VD968_17045"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: protein motif:HMM:NF003657.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HYE16148.1"
                     /translation="MAVFVHPSAIVSPRAELGDGSHVGPYCTVGEEVRLGERARLESH
                     CVVDGRTEVGDDTHIYPFVSVGLASQDLKYRGEPARTVVGRRCRLREFVTVHRGTEGG
                     GMLTSIGDDCLIMAQAHVAHDCRVGDGVIMANAATLAGHVTVEGGANIGAYSGVHQFC
                     RVGREAYVGGYSVVVKDALPFALTAGNHAKCYGLNTVGMKRRGYPRETIDALHHAFRL
                     LLSSRLNTTQALERLRAESGGSAEVAELIRFIETSERGVVK"
     gene            4774..5583
                     /gene="lpxI"
                     /locus_tag="VD968_17050"
     CDS             4774..5583
                     /gene="lpxI"
                     /locus_tag="VD968_17050"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: protein motif:HMM:NF017989.4"
                     /note="LpxI, functionally equivalent to LpxH, replaces it
                     in LPS biosynthesis in a minority of bacteria; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase LpxI"
                     /protein_id="HYE16149.1"
                     /translation="MRYGLIAGNGRFPFLVLEGARRAGVEMAVAAIKEETDPEIEKVA
                     GKLTWVGIGQLGKMIRFFKREGVGKAIMAGQVRHVQIFSGALPDVRMLRMLLALPRRN
                     TDALIGGVAAELAGEGIELIDSTYFLQDHLPGEGVLTKRAPDARERGDIEYGLEVARE
                     IARLDLGQTIVVRARACVAVEAMEGTDAVIERAGHLARGRLTVVKVAKPGQDMRFDVP
                     VVGLPTVETMAAAGATCLCVTAGKTLIFDSAEMLALADRHRISVVAVPPVG"
     gene            complement(5667..6002)
                     /locus_tag="VD968_17055"
     CDS             complement(5667..6002)
                     /locus_tag="VD968_17055"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYE16150.1"
                     /translation="MPRIEAETATGKQSFEAGDGRKLVLAIEDAGIDILHRCGGNAKC
                     TTCRVEVVAGDPGEIGEAERERLARETGLAENVRLSCQVRVHDDLKVRVVNQVSTRGM
                     DAGPRPAED"
     gene            complement(6021..6377)
                     /locus_tag="VD968_17060"
     CDS             complement(6021..6377)
                     /locus_tag="VD968_17060"
                     /inference="COORDINATES: protein motif:HMM:TIGR00049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HYE16151.1"
                     /translation="MAATQIPTMTLNVTEAAAEEIRKFMAGEEGLPETAGLRVRVVPG
                     GCSGFQYSLNIEESSRPNDHVMDSHGVRLFVDMFSAQYLNGVEIDYVTNVMGSGFTFK
                     NPNATGGCGCGSSFTA"
     gene            complement(6488..7570)
                     /locus_tag="VD968_17065"
     CDS             complement(6488..7570)
                     /locus_tag="VD968_17065"
                     /inference="COORDINATES: protein motif:HMM:NF022077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140663 - ATP-dependent FeS chaperone
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HYE16152.1"
                     /translation="MAQVTEAEVYGALSRVKDPDLNKDIVRLGFIKDLKIEGGDVSFR
                     VVLTTPACPVREQLQEQSRAAVASLPGVTSVSVTMDAEVPKGRGMGEKLSVEGVRNII
                     AVSSGKGGVGKSTVAVNLAVSLARDGARVGLMDADVYGPNVPLMMGVARERPTVNVNK
                     LVPLEAHGIRLMSMAVLKPGDEPMIVRGPILHGLVRQFLQDVEWGELDYLVVDMPPGT
                     GDVQLSLAQLVPVQGAVLVTTPQEVALADVRRALRMFEAVNVPVLGVVENMSYFVAPD
                     TGTRYNIFGEGGGERLSRGYGVPFLGAIPLGVEVREGGDRGVPVVVSDPASPQAEAFR
                     RVAEEVARQVSIEAMKPELVVLGKAR"
     gene            complement(7590..8264)
                     /locus_tag="VD968_17070"
     CDS             complement(7590..8264)
                     /locus_tag="VD968_17070"
                     /inference="COORDINATES: protein motif:HMM:NF020581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYE16153.1"
                     /translation="MNFVVVAAVKIGLGASREEIVQLLRARGRASADELAAALEVSKQ
                     CVRKHLDVLERDGYVEHAPERGDRGRPAHLFRLTEKAGELFPRRYDVFAKAVLRQIGE
                     VFGERGLDAVLCGCAEETISRLRPQLEGLAFDARVTRLAELLGEMGYEAEAERLADGS
                     YLLTEWNCPQAELAREYGQLCERELTVYRELLGAEVVRESRIAGGAPRCSYKILRPKK
                     KAGGRA"
     gene            8389..9153
                     /locus_tag="VD968_17075"
     CDS             8389..9153
                     /locus_tag="VD968_17075"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE16154.1"
                     /translation="MQDVLGRFSNRVSDYVKYRPGYPPAVLELLREECGLTPASVVAD
                     VGSGTGILSELFLKNGNLVYGVEPNREMREAGERLLSAYENFKSVDGRAEATTLGDAS
                     VDFVTAGQALHWFEPRASRREFARVLRGGGWLVVVWNERRLDSTPFLAAYERLLQTYG
                     TDYKEVAHADAGGALIGGFFGEGGARLKSFDNAQTFDLGGLRGRLRSASYTPEPSHPN
                     FEAMMAELERLFVEHERGGRVVVEYDTNVYYGQLRD"
     gene            9354..>11131
                     /locus_tag="VD968_17080"
     CDS             9354..>11131
                     /locus_tag="VD968_17080"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HYE16155.1"
                     /translation="MLLAAALSVCALAPVAAAGRQRKPAEKKQPAAQSPAGSARSARV
                     PLETLLSIMAAEDERRWDASELGGLFTHASAAVRGRAALAAGRIGDEGAVAPLSALLR
                     RDADEPVRAAAAFALGEIESGSGADALIETLRLSKSAPVRARAIEALGKIAAALPESQ
                     ADLKRRSGEAITAAVAAEQRQARPNRSVLLLGLTALLRARPEGAARTAAASLNSPDAR
                     VRADAANALARMRAKEALERLRAMLSNDADAVARANAARALGAAEDPASFDSLLERAS
                     TDPDSRVRVSAVRSLAQLKDARAADRLITRGVELLATYKALRAGSKASPAEVNELLEV
                     ATTLGRLLTNTGDERAVTLLRQVREAGVGAPEVETALARVAPVQYLRDRALVDDMNRA
                     AASKNSGVPWQKVSAVGQGLGETAGLSSAMVGNAVVGLQADAQIMLRSLIDSPNTPPL
                     AVPDLLRTLAAFKPADLASVARARLAADDVIVRATAAEILAELPPDAETARALAAALP
                     RALQDSMNDAALSILGALAKQQGAEATGAITKALEVTDYLVRRRAADILRERSGGAQA
                     ERRVETVATRNHRADYERAAARIGKQV"
BASE COUNT         1808 a         3929 c         3628 g         1766 t
ORIGIN      
        1 ctcgacaagc tcgaatacga cctgcgccag aacgtcgtca gccacatgcg ctcgaagggc
       61 tacctcgagg cgcgcaccgg cgagccgcag gtcgaggagg tctcgcagac ctccatctcg
      121 ctgaccttcg acgtggacga gggcgaccgc gtccgcgtcg tcgacatcca gttcgagggc
      181 aacacggtct tctcggacgg cgacctccgc ggctcgatga agctcgtcaa ggaggccggg
      241 ctgatctcgc gcttcaaggg gcaggacatc ctccacctcg aaaagctcga atacgacctg
      301 ggccgcaacg tcgtcggcca catgcgctcg aagggctacc tcgaggcgcg caccggcgag
      361 ccgagggtcg agggcgtcgg gccgcgccgc acgggcttcc ccgtcctccc gctcccgctc
      421 ctctcctccg ttgacgaggg cctgcgcatc accgtccccg tcaccgaggg gaagctctac
      481 cgccttggcg agataaagat cgagggcaac tcgatctact ccgaggacgt catccggcag
      541 gtcatcggcc tcaggcccgg cgagatcgcc aacgcgcagc gcatcgtcaa ggcgctctcg
      601 gaagacctcg acaagctcta cggccgcgcc ggcttcatac agtacgagta cgacatcaac
      661 cccacgttca agcccgaccc gcagcgcccg caggagggca tagccgactt caccatcacc
      721 atcaccgagg gcaagcagtt cagcctgcgc cgcctcgagt tcgccggcaa cacctacacg
      781 cgcgacaacg tcctccgacg cgaggtggcc gtcaacgagg gcgacatatt cgaccagacg
      841 ctctgggagt attcggtgct ccgcctcaac cagctcggct tcttcgaccc gattgacaag
      901 gagaaggacg ccaacttccg caccgacgag gagcggggcg aggtcgagat agagctgcgg
      961 gtcgccgagc gcgggcgcaa ccagatagcc ttcaacggcg gcgtctccgg cattggcggc
     1021 tcgttcttcg gcctcgagta ctcgacgaac aacctcttgg gccgcggcga gtcgctctcg
     1081 ttccagttcg ccttcggcaa ccgccagcgc tcgatcctct tctcgttcac tgagccctac
     1141 gtcaaagacc gccccatctc gatcggcttc acggccttca ccgagtcgcg caagttcttc
     1201 ggcgagggga cgatactctc cgagaacctg gcggcgctcg ccggcatcac gaaccccatt
     1261 gacttcttca acgtgagcga ggagaacctg ttcacgcaga acacgacagg cgggtcgctt
     1321 ttcgcgagcg cgccgctgtg ggagttctgg aagccgcgca gcagccggct cgtccgcatc
     1381 gcgcgctcgt cgcgcatagg gctctcctac tccatctcgc agtcctccat cgaagacccg
     1441 ccggtcaacg agcaggacga ccgcagctcc ttcatccccg tcgtcttcga ccagccgagc
     1501 atcctgacga gcagggtcac gccctccttc gtcttcgaca cgcgcaacgg ctcgattgac
     1561 ccgaccgagg ggcagcaggt cactttccag ctcgccttcg cgggggcggg cggcgacgtt
     1621 cgcacctacc agccgtccgt ctccttcatg cggttcatgc cggttaggcg caagcgctcc
     1681 gagaaccccg aggtcttcgg cttccgcctg gtcgccggcc acgtcgggag cttcggcatc
     1741 accgagcagg tgcgcagggc gcaggagacc tcgctctcct tcatcaacgg cgtccccatc
     1801 tacgagcgct tcttcctcgg cgacgagttc tcgatacgcg gctacaacgt ccgctccatc
     1861 ggccccgtcg tcccgctcga agtatatgtg acgacgcgcg gcgtccgggc ctcggccgtc
     1921 cccctgggcg atgaggtggt ggacataccc ggcctctcgg agtcgctgcg cgagcggctc
     1981 gcgacgctcg gcaccttcac ggggccgacg ggcgcgaacc ccgtcatcgt tgaccgcagc
     2041 ttccgactgc tcggcggcga cacgcagctt ctggggaact tcgagtaccg cgtgcccatc
     2101 ttcggccccc tgcaactggc ggccttcgcc gacataggct cggccttcaa cctgcggacg
     2161 aagaccgacc agatattctc gaccgagttt ttgcccgacc agccgttcat cagccgcctc
     2221 ggcggcatca acgggctggt tcggctgcgc aacccgcagc tcgcggcctc gcagttgacg
     2281 ggcgccctgc tcgttcaggg cgaccggctg ctcacgcgcg acgagcttca ggccctggtc
     2341 ggcgcgggct ctttcgaccc ggcgacgggc ctgccgctcg gggtgcagtc agtcttcctg
     2401 cgcgccacgc ccacggacgc agacccgacg gccggcgtgc agacgaacac ggtggcgcgc
     2461 atctcgcaga gccttttctc gaaattaggc gactaccgat ccagcctcgg cgccgagttg
     2521 cgcatccaac tgccggtggt caacgtgccg ttccgtttca tttacgcgta caaccccaac
     2581 gcgaaggttg acttcctcgg cgagaagagg agaaccttcc gcttcagcat cgggcggact
     2641 ttctagaacg tctgggattt caaaccacgc ggggcgccgc cgagcaggcg gcccgccctt
     2701 ttaactaagg taaggagcag tacaagagac atgaaagtga tccgtaacat cgccgccgca
     2761 ttcgccctcg cggccttcgc cgccgtgagc gccagcgcgc agcagcccgc ggccaaccgc
     2821 cccgcggccc ccgccacggg cgcgcccgcc gccaacgtcc ccgacggcaa gatagccatc
     2881 attgacacag aggagttcgc caacccgcag tcggggatag cgcgcctcat caacgccttc
     2941 aacacgatgg agcgcgagtt caagccgcgc cgcgacgaga taaccactct caagacgcgc
     3001 tacgacgcca tcgtcaagga ggttcaggac acgcagaagg tcgccgacga gaagacgctc
     3061 gctgcgaagg ccgaccaggc cgagacgctc aagatagaga tggagcagaa gcagcaggcc
     3121 gggcagcgcg cctacgagaa gcgctggcgc gagctctccg acccgatcaa ccgcgacatc
     3181 aacgcggcgc ttcagaacta cgcccgctcg cgcggcatca cgctcgtcat tgacatcagc
     3241 aagatgggcg gcttcgtcat ggtcgtcaac gaccaggttg acatcacgaa ggctttcatc
     3301 gccgactaca accagcggaa cccggcctcg gcggccgcgg ccgcgccggc cccgaaccgc
     3361 taggccccga ctgacggcgg ccgaggcgac gagtgacgag cgacgagctt tgcccgctcg
     3421 tcgctcgtcg cgcgtctctt taaccatatg gaaacggttc tcgacatcct cgccatacag
     3481 gagatcctgc cgcaccgcta cccgttcctg ctcgttgaca ggatagtgga gataacgccg
     3541 ggcgagagga tcgtcggcgt caagcaggtg acgataaacg agccgttctt ccagggccac
     3601 ttccccggcg cgcccgtcat gccgggcgtc ctcgtcgtcg aggcgatggc gcaggtcggc
     3661 gccgtctatg cgctcaggca gattgaagac cgcgaccgca agctcgtcct cttcagcggc
     3721 atagacaacg cgcgcttccg aaggccggtc gtccccggag acacgctggt gctgacggtg
     3781 acgccagtgc gcgtcggcgg ccgggtgcag cgcatgcgcg gcgaggcgca cgtcgcgggc
     3841 cagctcgccg ccgaggccga catcatgagc gtcgtcgccg accgcaaagc ggtgaaatga
     3901 ggggccgggg gttaggggcc aagggctagt agaaagcaga agtctttctc tggcctctgg
     3961 cccctagccc ccggccccta gcttttatgg ccgtcttcgt acacccttcg gcaatagtga
     4021 gcccgcgcgc agagctcggc gacggctcgc acgtcggccc ttactgcacg gtgggcgagg
     4081 aggttcgcct cggcgagcgc gcccggctcg aatcccactg cgtcgtggac ggtcgcacgg
     4141 aggtaggcga cgacacgcac atctacccgt tcgtctccgt ggggctcgcc tcgcaggact
     4201 tgaagtacag gggcgagccc gcgcgcaccg tcgtcggccg ccgctgccgc ctgcgcgagt
     4261 tcgtcacagt ccaccgcggc accgagggcg gcgggatgct gacctcgata ggcgacgact
     4321 gcctcatcat ggcgcaggcg cacgtggcgc acgactgccg tgtgggcgac ggcgtgataa
     4381 tggcgaacgc cgccacgctc gccggccacg tcacagttga aggcggcgcg aacatcggcg
     4441 catactccgg cgtccaccag ttctgccgcg tcggccggga ggcatacgtg ggcggctact
     4501 cggtcgtcgt caaggacgcg ctcccgttcg cgctcactgc cggcaaccac gccaaatgct
     4561 acggcctgaa caccgtcggc atgaagcggc gcggctaccc gcgcgagacc attgacgccc
     4621 tgcaccacgc cttccgcctc ctgctctcct ccaggctcaa cacgacgcag gcgctcgagc
     4681 gcctgcgcgc cgagtcgggc ggctccgcgg aggtcgccga gctcatccgc ttcatagaga
     4741 cctccgagcg cggcgtcgtc aagtgacaag ctcatgcgct acggcctgat tgcgggcaac
     4801 ggcagattcc ccttcctcgt gcttgagggc gcgaggcgcg cgggcgtcga gatggccgtc
     4861 gccgcaatca aagaggagac cgaccccgag attgagaaag tggcagggaa gctaacgtgg
     4921 gtcggcatcg gccagttggg caagatgatc cgcttcttca agcgcgaggg cgtggggaag
     4981 gcgatcatgg cggggcaggt caggcacgtg cagatattca gcggcgcgct cccggacgtg
     5041 cgtatgcttc gcatgctcct cgcgctcccg cgccgcaata ccgacgccct catcggcggc
     5101 gtcgcggccg agttggcagg cgagggcatc gagctgattg actcgaccta cttcctgcaa
     5161 gaccacctgc ccggggaggg cgtgctgact aagcgcgccc cggacgcgcg cgagcgcggc
     5221 gacatcgagt acgggctgga agtcgcgcgc gagatcgcgc gtctcgacct ggggcagacg
     5281 attgtggttc gggcgcgggc ctgcgtcgcc gtcgaggcga tggagggtac tgacgcggtg
     5341 atagagcgcg cggggcacct cgcgcgcggg cggctgactg tggtgaaggt cgcgaagccg
     5401 ggacaggaca tgcgcttcga cgtgcccgta gtcggcctgc ccacggtcga gacgatggct
     5461 gcggccggcg ccacctgcct ctgcgtcacg gccggcaaga ccctcatctt cgacagcgcc
     5521 gagatgctcg cgctcgccga ccgtcaccgc atctcggttg tggccgtgcc gcccgtcggc
     5581 taaaacgatg acggaataaa aacgcgcggc gggtggacga cagcggcgct gtcgtccacc
     5641 cgccgcgcgt tttcgcctgc cgccgtctag tcttcggcgg ggcgcgggcc ggcgtccatg
     5701 ccgcgggtgc tgacctggtt gacgactctc accttgaggt cgtcgtggac tcgcacctgg
     5761 caggagaggc gcacgttctc ggcgagcccc gtctcgcgcg cgaggcgctc gcgctcggcc
     5821 tcgcctatct cgccggggtc gcccgcgacc acctccacgc ggcatgtcgt gcacttggcg
     5881 ttgccgccgc agcggtgcag tatgtcaatg cccgcgtcct cgattgcgag caccagcttg
     5941 cgcccgtcac ccgcttcgaa cgactgtttg cccgtcgcgg tctccgcttc gattctaggc
     6001 atgccccctc ctcgcgccgc ttaggccgtg aacgaggagc cgcagccgca gccgcccgtc
     6061 gcgttcgggt tcttgaaggt gaagcccgag cccatcacgt tcgtcacgta gtcaatctcg
     6121 acgccgttga ggtactgcgc gctgaacatg tcaacgaaca ggcggacgcc gtgcgagtcc
     6181 atgacgtggt cgttcgggcg cgagctctcc tcgatgttca ggctgtactg gaagcccgag
     6241 cagccgcccg ggaccaccct cacgcgcagg cccgccgtct ccggcagccc ctcctcgccc
     6301 gccatgaact tccttatctc ctcggccgcc gcctccgtca cgttcaacgt catcgtcgga
     6361 atttgtgtcg ctgccatttt cttctccttt tttattgcct ttcggtcttc ggattaagta
     6421 atcagctatc ggcactcagc tctcggcggt gccggaaagc tgactgctga tagctgatcg
     6481 ctgattgcta acgagccttg ccgagcacga ctagctcggg cttcatcgcc tctatcgaga
     6541 cctgacgcgc gacctcctcg gccacgcggc ggaaagcctc ggcctgcggc gacgccgggt
     6601 cgctgacgac cacaggcacc ccgcggtctc cgccctcgcg cacctcgacg ccgagcggta
     6661 tcgcccccag gaaggggacg ccgtaccccc gcgagaggcg ctcgccgccg ccctcgccga
     6721 agatgttata gcgcgtgccg gtgtcgggcg cgacgaagta gctcatattc tcgacgacgc
     6781 cgagcacggg gacgttgacg gcctcgaaca tcctcagcgc gcggcgcacg tcggcgagcg
     6841 cgacctcctg cggcgtagtc acaagcaccg ccccctgcac ggggactagc tgggcgagcg
     6901 agagctgcac gtcgcccgtg ccgggcggca tgtcaactac gaggtagtcg agctcgcccc
     6961 actccacgtc ctgcaggaac tggcgcacga gcccgtgcag gatggggccg cgcactatca
     7021 tcggctcgtc gcccggcttg aggactgcca tggacatgag ccgtatgccg tgcgcctcta
     7081 aggggacgag cttgttgacg ttcaccgtag gccgctcgcg cgcgacgccc atcatcagcg
     7141 gcacgttagg cccgtacacg tccgcgtcca tcaagcccac gcgggcgccg tcgcgcgcga
     7201 ggctcacggc cagattcacc gccaccgttg acttgccgac gccgcccttg cccgagctta
     7261 cggcgatgat gttgcgcacg ccctcgacgc tgagcttctc gcccatgccc cggcctttag
     7321 gcacctcggc gtccatcgtc acgctcaccg aggtcacgcc cggcaggctc gccacggccg
     7381 cgcgcgactg ctcctgcaac tgctcgcgca cggggcacgc cggggtcgtg agcacgacgc
     7441 ggaagctcac gtcgccgccc tcgatcttca aatcctttat gaagccgagg cgcacgatgt
     7501 ccttgttcaa gtccgggtct ttgacccgcg agagcgcccc gtaaacttca gcctcagtca
     7561 cttgtgccat gttcttaaac agaagccttt caagccctgc cgcccgcctt cttcttcggc
     7621 cttaaaattt tgtacgagca gcgcggcgcg ccgcccgcta tgcgcgactc gcggacgact
     7681 tcggcgccga ggagctcgcg ataaaccgtt aactcgcgct cgcagagctg gccgtactcg
     7741 cgcgccagct cggcctgcgg gcagttccac tccgtcagca ggtacgagcc gtccgcgagc
     7801 cgctcggcct cggcctcgta gcccatctcg cccagaagct cggcgagccg cgtcacgcgc
     7861 gcgtcgaacg cgagcccttc gagctgcggg cgcagccgcg agatcgtctc ctcggcgcag
     7921 ccgcagagca ccgcgtccag gccccgctcg ccgaagacct cgcctatctg tctgagcacc
     7981 gcctttgcga acacgtcgta gcggcgcggg aaaagctcgc cggccttctc cgtcagacgg
     8041 aacaggtgtg cggggcggcc gcggtcgccg cgctccggcg cgtgctcgac gtagccgtcg
     8101 cgctccagaa cgtccaggtg cttgcgcacg cactgcttcg agacttcgag cgccgcggcg
     8161 agctcgtccg cgctcgcccg cccgcgcgcg cgtagtagct gcacgatctc ctcgcgcgag
     8221 gcgccgagcc cgatttttac ggctgcgacc acgacgaaat tcatgctacg tgccgccacc
     8281 ccttttgtca accgcgcggt tgttttatcc gcccccggca caaatgtttc cgcgccgtgc
     8341 gcgcgcgggt ttagaatcat cagcctgttc gggagaattt ttaagcctat gcaagacgtt
     8401 ctcgggcgct tctcaaacag ggtcagcgac tacgtgaagt accgccccgg ctacccgccg
     8461 gccgtgctcg aactgctgcg cgaggagtgc ggccttacgc ccgcttcggt cgtggcggac
     8521 gtgggctcgg ggacggggat tctgtcggag ctgtttttga agaacgggaa tctagtttac
     8581 ggcgtcgagc ccaaccgcga gatgcgcgag gcgggcgagc ggctgctgtc ggcttacgag
     8641 aacttcaaaa gcgttgacgg gcgggccgag gccacgacgc ttggcgacgc gagcgttgac
     8701 ttcgtgacgg ccgggcaggc ccttcactgg ttcgagccac gcgcgtcgcg gcgcgagttc
     8761 gcgcgcgtgc taaggggcgg cggctggctc gtcgtcgtct ggaacgagcg gcggctcgac
     8821 tcgacgccgt tcctagccgc ctacgagcgg ctccttcaaa cttacggcac ggactacaag
     8881 gaggtcgcgc acgcggacgc gggcggggcg ctcataggcg gcttcttcgg cgaaggcggc
     8941 gcgcgcctga agagtttcga caacgcgcag acgttcgacc tcggcgggct tcgcggccgc
     9001 ctgcgctcgg cctcctacac gcccgagccc agccacccga acttcgaagc gatgatggcg
     9061 gagctggaac ggctcttcgt cgagcacgag cgcggcggcc gcgtcgtcgt cgagtacgat
     9121 acgaacgtct attacgggca actaagagac tagaggctag agaccaaggg ctagttgtag
     9181 cgagtgtttt ttaactagcc tctagtctct agcccccggc ccctgtttta acttgacagg
     9241 cgcggcgtgt gtcgccgata catagtcttc ggtcttcccc tttagaacgt ttaagcccca
     9301 tgccgaaaaa cagagacgca agagagacgg gtcgcaggtc tgcccggccg gcgatgctac
     9361 tggccgcggc gctctcggtc tgcgcgctgg cgccggtcgc ggccgccggg cggcagagga
     9421 agccggcgga gaagaagcag ccggcggcgc aaagccccgc cggtagcgcg cgctccgctc
     9481 gagtcccttt ggagacgctg ctctcgataa tggcggcgga ggacgagcgg cgctgggacg
     9541 catcggagct gggcgggctc ttcacgcacg cgagcgcggc cgtgcggggg cgcgcggcgc
     9601 tcgcggccgg gcgcatcggc gacgaggggg cagtagcgcc gctctcggcg ctcttgaggc
     9661 gcgacgcgga cgagcctgtg cgcgccgcgg cggccttcgc gctcggcgag atagagtcgg
     9721 gctcgggcgc agacgcgctc atcgagacgc tgcggctgtc caagtcggct ccggtgcgcg
     9781 cccgcgcaat cgaggcgttg ggcaagatcg ccgctgcgct ccccgagtcg caagcagact
     9841 tgaagcgcag gagcggcgag gcgataacgg ccgccgtcgc ggccgagcag aggcaggcga
     9901 ggcccaaccg ctctgtcctc cttctcggcc tgacggcgct cctgcgcgcg cggcccgaag
     9961 gcgcggcgcg caccgcggcc gcatccctca actcgcccga cgcgcgcgtg cgggccgacg
    10021 ccgccaacgc gctcgcgcgc atgagggcca aggaagcttt ggagcgcctg cgcgcgatgc
    10081 tctcgaacga cgcggacgcg gtcgcgcgtg cgaacgcagc gcgcgcgctc ggcgcggccg
    10141 aggacccggc ctcgttcgac tctctgcttg agcgcgcctc gacagacccg gactcgcgcg
    10201 tgcgcgtgag cgccgtgcgc tcgctcgcgc agctcaagga cgcgcgcgcc gcagaccgtc
    10261 tcatcacgcg cggcgtcgag ctgctcgcca cctacaaggc cctgcgcgcg ggctcgaagg
    10321 cgagccccgc ggaggtcaac gagcttctcg aagtggctac tacgctgggc cggctgctca
    10381 cgaacacggg cgacgagcgc gcggtgactc tcttgaggca ggtgcgcgag gcgggcgtcg
    10441 gcgcgcccga ggtcgagacg gcgctggcgc gcgtagcgcc cgtgcagtac ctgcgcgacc
    10501 gcgcgctcgt tgacgacatg aaccgcgccg ccgcgtcgaa gaactcgggc gtgccgtggc
    10561 agaaggtctc ggccgtaggg cagggcctgg gcgagacggc gggcctgtcg agcgctatgg
    10621 tcggcaacgc ggtcgtaggg ctccaggccg acgcgcagat aatgctgcgc tctctcattg
    10681 acagcccgaa cacgccgccg ctcgcggtcc cggacctcct gcgcacgctc gcggccttca
    10741 agccggccga cctcgcctcg gtcgcgcgcg cccgcctcgc ggccgacgac gtgatcgtgc
    10801 gcgccacggc ggcggagatt ctcgccgagc tcccgccgga cgctgagact gcgcgggcgt
    10861 tggcggcggc gctcccgcgc gccctgcagg actctatgaa cgacgccgcg ctctccatcc
    10921 tcggcgcgct cgcaaagcag cagggggcgg aggcgaccgg ggccatcacg aaagcgctcg
    10981 aagtcacaga ctacctcgtg cgccgccgcg ccgccgacat actgcgcgag cgctcgggcg
    11041 gcgctcaggc cgagcgccgc gtcgagacgg tcgccacccg caaccaccgc gcggactacg
    11101 aacgggcggc cgcgcgcata ggcaagcagg t
//
LOCUS       DASPKR010000637         3714 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_883108, whole genome shotgun sequence.
ACCESSION   DASPKR010000637 DASPKR010000000
VERSION     DASPKR010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3714)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3714
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_883108"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..984)
                     /gene="sucD"
                     /locus_tag="VD968_17085"
     CDS             complement(100..984)
                     /gene="sucD"
                     /locus_tag="VD968_17085"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018287377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HYE16156.1"
                     /translation="MSVLVDKSTRLVVQGITGKEGSFHTKQMVEYGTKVVGGVTPGKG
                     GTTHEGIPVFNTVAEAVSEAGANASVIYVPPAFAADAIMEAADAGVPLVVCITEGIPA
                     LDMVKVKEYLSDRPTRLIGPNCPGIISPGKCKIGIMPGHIHREGRIGVVSRSGTLTYE
                     AVGQLTALGLGQSTAIGIGGDPIVGTTHLNALALFQDDPETEGIVMIGEIGGTAEEEA
                     AAFAKDNVTKPIVAFIAGQTAPPGRRMGHAGAIIAGGKGTAAEKMKALEEAGIRVVHS
                     PADIGQAMKEELGARATA"
     gene            complement(1154..3607)
                     /locus_tag="VD968_17090"
     CDS             complement(1154..3607)
                     /locus_tag="VD968_17090"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF11 domain-containing protein"
                     /protein_id="HYE16157.1"
                     /translation="MRSFTRLCGSLSAALLLCIALSASQSASAATFNVNSTGDAPDAS
                     AGDGTCATAGSVCTLRAAIEEANASAGDDIIEIGATGAITLATALPDLSTNVEMNGPG
                     AGLLTVSRSVSAGRFRVFTVTGGATVTISGLTVSGGHADDGEDAAVIDGGGIYNSAGC
                     TLTLTGVTVSGNRAGDGVPDEIGDGSKGGDGGGIYNAGTLTMTNCTVSDNHAGAGSGD
                     VGDFRPAGGGGGGGGLFNNGSLIVTNCTVSGNHAGAGGGVSGSGFGGGGGNGGGVLNS
                     NSLTMTNCTVSDNHAGGGGSVSGFGGGGGGGGGGGGFFNSGSLTLVSCTVSGNQAGAG
                     GAGDFEDGAAGAGGGIFGTASISNTIIANNDEAFGGGPDAFGTLDSQGYNLIEDTTDA
                     TIVESQNPGTDITGQDPVLGPLQNNGGPTQTHELLSGSPAIDKGDSFGLDKDQRGSDR
                     PFDNAAITNASDGSDIGAFEAAPSTDLEITKRDSADPLTVGASFTYTLRVYNRGPLEA
                     SNVVVTDTLPAGLTPTGVSLDASSDFTGAGCTLTGNTVNCALGTMRVFDGTFDSAVKK
                     GKAIVIVDVEATQAGQYTNEATVSADETDNNTSNNTARQPTTVLGISSVEVTPDSVPG
                     GASCQKPVVKVNLTSAPPADIEVEISDDLAATTNIPDSSSPLLLRIPKGQSSARLLVE
                     TAEIVALQAGQVTAAFGPSSASAPLTVMPIGIRSLSVSPSSVEGGRQSTGTVKLECST
                     SEGIQVTLKTGKRNVASFIDPNTGDPVHPLTLTIDGSNQATFTIQTFGVSAPSNVNVR
                     ATANGATKNTKLVVTPPPN"
BASE COUNT          525 a         1208 c         1278 g          703 t
ORIGIN      
        1 cttgccggcc cgaaccgcgt cgggcttgat gatgccgaaa gtaaggttgc ctgcctgttc
       61 cgccattaag tccccttcag gaaaattttt taaaacgcct caagccgtcg cgcgcgcgcc
      121 aagctcttcc ttcatggcct ggcctatgtc ggcgggcgag tggacgaccc ggatgccggc
      181 ctcctcaaga gccttcatct tttcggccgc agtccccttg cctccggcga ttatcgcgcc
      241 cgcgtgtccc atgcggcggc ccggcggggc cgtctgcccg gcgatgaagg cgacgatggg
      301 cttcgtcacg ttgtctttgg cgaaggctgc ggcctcctcc tcggccgtgc cgcctatctc
      361 gccgatcatc acgatgccct cggtctcggg gtcgtcctgg aagagcgcga gcgcgttcag
      421 gtgcgtggtg ccgacgatgg ggtcgccgcc gatgccgatg gccgttgact ggcctaagcc
      481 cagcgccgtc aactgcccga ccgcctcgta ggtgagcgtc cccgaacggg agacgacgcc
      541 gatgcggccc tcgcggtgta tgtggccggg catgatgcct atcttgcact tgccgggcga
      601 gatgatgccg gggcagttcg ggccgatgag gcgcgtgggc ctgtcggaga ggtactcctt
      661 gaccttaacc atgtcgagcg ctgggatgcc ttcggtgatg cagacgacga gcgggacgcc
      721 tgcgtcggcg gcctccatga tggcgtcggc tgcgaaggcg ggcgggacgt agatgacgga
      781 ggcgttcgcg cccgcctcac tcacggcctc ggcgacggtg ttgaagacgg gtatgccctc
      841 gtgcgtggtg ccgcccttgc cgggcgtgac gccgccgacg accttggtgc cgtactccac
      901 catctgcttc gtgtggaacg agccctcttt gcccgtgatg ccctgcacga cgaggcgcgt
      961 acttttgtca acgagaacgc tcaacggttt tgactcctcg cgctcggccc ccggccgggc
     1021 gcgtcggccc ggctgagaag ccccgaattt aattgcttga cttaggcgcc gaatatacca
     1081 cagcccgctc gccctcccga aacgagccgg gagggcgagc gggcttaagt cacggcggtt
     1141 ttggaacgcg cccttaattc ggcgggggcg tcaccacgag ctttgtgttc ttcgtagccc
     1201 cgttcgccgt cgctctgacg ttcacgttcg acggagcgct gaccccgaaa gtctgtatcg
     1261 tgaaggtcgc ctggttcgag ccgtctatcg tcagcgtcag cgggtgaacg gggtcgcccg
     1321 tattcgggtc aatgaacgaa gcaacgttcc gcttgccggt cttcagggtc acttgtatgc
     1381 cctcgctagt ggagcattca agcttgacag tccccgtgct ctgccgcccg ccctccacag
     1441 aagagggcga gacggacagg ctcctgatgc ctatgggcat gacggtgagc ggcgccgacg
     1501 cgctcgacgg gccgaaggcg gccgtcacct gcccggcctg cagagcgacg atctccgcag
     1561 tctccaccag gagcctcgcc gaggactgcc ccttcggtat gcggagcagc agcggcgacg
     1621 aggagtcggg gatgttggtc gtagccgcca ggtcgtcgga gatttcgacc tcgatgtccg
     1681 cgggcggcgc gctcgtcaga tttaccttca ctacaggctt ctggcaggag gcgccgccgg
     1741 ggacgctgtc gggcgtgacc tcgacggagg agatgccgag cacggtggtc ggctgccgcg
     1801 ccgtgttgtt cgacgtgttg ttgtcggtct cgtcggccga gacggtggcc tcgttggtgt
     1861 actggccggc ctgcgtggcc tcgacatcca caatgacgat ggccttgccc ttcttcacag
     1921 cgctgtcgaa cgtgccgtcg aagactcgca tcgtgccgag agcgcagttg accgtgttac
     1981 cggtgagcgt gcagcccgcc cccgtgaagt cgcttgaggc gtcgaggctc acgcccgtcg
     2041 gggtcagccc cgcggggaga gtgtctgtga ctacgacgtt gctggcttcg agggggccgc
     2101 ggttatagac gcgcagggtg taagtgaatg acgcgccgac cgtcagaggg tctgcggagt
     2161 cgcgcttggt gatctcaagg tctgtggacg gggctgcctc gaaggcgccg atatcggagc
     2221 cgtcgctggc gttcgtaatc gccgcgttgt cgaaggggcg gtcggagcca cgctggtctt
     2281 tgtcgaggcc gaagctatct cccttgtcta tggcggggct tcccgagaga agttcatgcg
     2341 tctgcgtcgg gccgccgttg ttctgtagtg ggccgagcac ggggtcttgg cccgtgatgt
     2401 ccgtgccggg gttctggctc tcgacgatgg tcgcgtcggt agtgtcctcg atgaggttgt
     2461 agccctgcga gtcgagcgtg ccgaaggcgt ccggcccccc gccgaaggcc tcgtcgttgt
     2521 tggcgatgat ggtgttgctg atggaggccg tgccgaagat accgccgccg gcgccggcgg
     2581 cgccgtcttc gaagtcgccg gcgccgccgg cgcctgcctg attgccgctt acggtgcagc
     2641 ttaccaacgt cagcgagccg ctgttaaaga agccgcctcc tccgccgcct cctccgccgc
     2701 cgccgccaaa gccggagacg ctgccgccgc cgcctgcatg gttgtcgctg acggtacagt
     2761 tcgtcatcgt cagcgagttg gagttaagga cgccgccgcc gttgccgccc ccgccgccga
     2821 acccgctgcc agagacgccg ccgccggcgc ccgcatggtt gccgctgacg gtacagttcg
     2881 tcacaatcaa cgagccgttg ttaaaaaggc cgccgccccc gcccccgccg cctgcggggc
     2941 gaaagtcgcc gacgtcgccg ctgccggcgc ctgcatggtt gtcgctgacc gtgcagttcg
     3001 tcatcgtcag cgtgccggcg ttgtatatgc cgcccccatc accgcctttg ctgccgtccc
     3061 cgatctcgtc tggcactccg tccccggccc ggttgccgct gaccgtcacg cccgtcagcg
     3121 tcagcgtgca gccggcgctg ttgtagatgc ccccgccgtc aatgacggct gcgtcttcgc
     3181 cgtcatccgc gtggccgccg ctcacggtca gccccgagat cgtgaccgtc gcgccgcccg
     3241 ttacggtgaa gacgcggaag cggcccgccg agacggagcg actcaccgtc agcaggcccg
     3301 cgccggggcc gttcatctcc acgttggtgg agaggtcggg cagagccgtc gccagtgtga
     3361 ttgcccccgt ggcgccgatt tcgattatgt cgtcgccggc cgaggcgttc gcctcctcaa
     3421 tcgcggcgcg cagcgtgcag acgctccccg ccgtggcgca ggtgccgtcg ccggccgagg
     3481 cgtccggcgc atcgcccgtg ctgttgacgt tgaatgtggc ggccgaggcg ctctgcgaag
     3541 cggagagggc gatacagagc aagagggctg cggacaggga gccgcaaagg cgggtgaagg
     3601 aacgcatggg ggaatactcc ttccgtctga attgttcggg gccggaacgc ggcgcgagtg
     3661 gggccggtgt tccaggtcag ggccgtcgag tgaaagggtt ggaaggcgct tagg
//
LOCUS       DASPKR010000638         2267 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_883184, whole genome shotgun sequence.
ACCESSION   DASPKR010000638 DASPKR010000000
VERSION     DASPKR010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2267)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_883184"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(315..1241)
                     /gene="speB"
                     /locus_tag="VD968_17095"
     CDS             complement(315..1241)
                     /gene="speB"
                     /locus_tag="VD968_17095"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR01230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008783 - agmatinase activity [Evidence
                     IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HYE16158.1"
                     /translation="MSESADLPMNFGGIAEEEFSGFESARVLVWPISYEGTVSYGGGT
                     GEGAMAIIDASRNMELYDEETDAEVYKLGIHTVELTEPVEPPEAMMKRLLERARELTA
                     TGKFVCMIGGEHSVSGPVIQAHAEAYKNLSVLQIDAHADLRDSYDGTPHSHASIMARV
                     VKDLRVPAVQVGIRSISADEARALDTLPTRIFWAKDIVGRTDWWDEAVDGLTENVYLT
                     IDIDGLDPSLVAQTGTPEPGGLGWYETVGLVRTLARKRRVVGMDLNEYAYVEGQNASA
                     FLCAKLIYKSLAYIFEAETERVRGSRASGAKA"
     gene            complement(1339..>2267)
                     /locus_tag="VD968_17100"
     CDS             complement(1339..>2267)
                     /locus_tag="VD968_17100"
                     /inference="COORDINATES: protein motif:HMM:NF014027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008612 - peptidyl-lysine modification to
                     peptidyl-hypusine [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="deoxyhypusine synthase family protein"
                     /protein_id="HYE16159.1"
                     /translation="AEAHRIWLDMLGDNTTVIVAASGALIPAGMRRLLAYVIKNRFVD
                     VMVCSGALLFQDLHETLGRQHFQSHPSMTDSELEASQINRMWDVLASEEEYREADEWV
                     GGFTNQLDQGRAYSTREFLHLLGRELAEIATDDGVLTSAYKARIPVFCPTISDSSITV
                     GIAGARFEKKNSFCFDLAQDVLDLMQVGARARVSGVINIGGGASRSFVHQMEAATGII
                     KSPARGHKYAIQISTEAPHPGGRSSPNMGDESVIFGKLQRGATTAYVNCDATIALPIL
                     VTSLSQTAAKYMKGRKRPTFTFNGREMLVEVP"
BASE COUNT          361 a          736 c          769 g          401 t
ORIGIN      
        1 gggaagtaag ggacgttggc ggcttcagtc gcgcgtgcaa cgtcctcccg cggaggcgga
       61 atcaccgagc gggcgagcgc gaaccagacc tcgcgcggca cgcgcgccct cgcgcgcgcc
      121 gcccgcggcc ccggcccggc cggctcacgg caggcttacc agggagggaa gtttgaagtg
      181 tctgctctca tcgtcttaaa accgtaaatc gtgaatcgtc aaccgtcaac cgtagtcgtc
      241 agtcatcagt tcgtgtcttt aactgacgac tgttgactga agactggtaa cttcgattga
      301 cgattcgcgg ctactcacgc cttcgccccg gacgcgcgcg agccgcgcac gcgctcggtc
      361 tcggcctcga agatgtaggc cagagattta tagatgagct tggcgcagag gaaggccgag
      421 gcgttctggc cctcgacgta ggcgtactcg ttcaagtcca tgccgacgac gcggcgcttg
      481 cgcgcgagcg tgcggacgag gccgaccgtc tcgtaccagc ccaagccccc cggctccggc
      541 gtccctgtct gcgcgacgag cgaagggtct aggccgtcaa tgtcaatggt cagatagacg
      601 ttctcggtca ggccgtcaac ggcctcgtcc caccagtccg tgcggcccac gatgtccttc
      661 gcccagaaga tgcgcgtcgg tagcgtgtcg agcgcgcgcg cctcgtcggc cgagatggag
      721 cgtatgccga cctgcacggc aggcacgcgc aagtccttca cgacgcgcgc catgatcgag
      781 gcgtgcgagt gcggcgtgcc gtcgtagctg tcgcgcagat cggcgtgcgc gtctatctgc
      841 aagaccgaca ggttcttgta cgcttcggcg tgggcctgta tgacggggcc gctcacggag
      901 tgctcgcccc ctatcatgca gacgaacttg cccgtcgccg tcaactctct cgcgcgctca
      961 agcagccgct tcatcatcgc ctcgggcggc tcgaccggct cggtcaactc cacggtgtgg
     1021 atgcctagct tatagacctc cgcgtcggtc tcctcgtcgt acagttccat gttgcgcgag
     1081 gcgtctatga ttgccatcgc gccctcgccc gtccccccgc cgtaggagac cgtcccctcg
     1141 tacgagatcg gccacaccag cacgcgcgcc gactcgaagc cggagaactc ctcctcggcg
     1201 atgccgccga agttcatcgg gaggtctgct gattcggaca tgagggaagt ataaagtagc
     1261 cggtagccag tagccagtag cgctccgcgc cgcgaacgcc ggcgcctccc gccaccacct
     1321 tttaccggct accgcttttt acggaacctc gacgagcatc tcgcggccgt tgaaggtgaa
     1381 ggtcgggcgc ttgcggccct tcatgtactt ggcggccgtc tgcgagagcg aggtgacgag
     1441 gatggggagc gcgatggtgg cgtcgcagtt gacgtaggcc gtggtcgcgc cgcgctggag
     1501 cttgccgaag atgacggact cgtcgcccat gttgggcgag gagcgcccgc cggggtgcgg
     1561 ggcctcggtc gagatctgta tggcgtactt gtggccgcgc gcggggctct tgatgatgcc
     1621 ggtggcggcc tccatctggt ggacgaagct gcgcgaggcg ccgccgccga tgttgatgac
     1681 gccggagacg cgggcgcgcg cgccgacctg catcaggtct agcacgtcct gcgcgaggtc
     1741 gaagcagaag ctgttcttct tctcgaagcg cgcgcccgcg atgccgacgg tgatggagct
     1801 gtcggagatg gtcgggcaga agacggggat gcgcgccttg taggccgagg tgagcacgcc
     1861 gtcgtccgtc gctatctcgg ccagctcgcg gcccaggagg tgcaggaact cgcgcgtcga
     1921 gtaggcgcgc ccctggtcga gctggttggt gaagccgccg acccactcgt ccgcctcgcg
     1981 gtactcctcc tcgctcgcca gcacgtccca catccggttg atctgcgacg cctcgagctc
     2041 cgagtcggtc atcgacgggt gcgactggaa gtgctggcgc ccgagcgtct cgtgcaggtc
     2101 ttggaagagc agcgcgcccg agcagaccat cacgtccacg aagcggttct tgatgacgta
     2161 ggcgagcaag cggcgcatgc cggccgggat gagcgcgccg gaggcggcga cgatgacggt
     2221 cgtgttgtcg ccgagcatgt cgagccagat gcggtgggcc tcggcca
//
LOCUS       DASPKR010000639         2310 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1777487, whole genome shotgun sequence.
ACCESSION   DASPKR010000639 DASPKR010000000
VERSION     DASPKR010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1777487"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..637
                     /locus_tag="VD968_17105"
     CDS             <1..637
                     /locus_tag="VD968_17105"
                     /inference="COORDINATES: protein motif:HMM:TIGR00227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HYE16160.1"
                     /translation="KLACSLDGRIATSTGDARWITGEESRARVHLLRRENDAVLVGAG
                     TVAADDPLLTDRSGLPRRLPLLRVVLDERLCLTPGSSLARTAHQSPVLVFTSEVADEA
                     RVAQLEECGVEVVRDASNGRDLGAVLEELNRRGVQGLLVEGGANVAGAFLRSGLVNKA
                     SFFVAPIILGGDAIGAVGGAGALSVAEAARLRDVEITRRGDDAEITGYLKQ"
     gene            634..1437
                     /gene="rsmA"
                     /locus_tag="VD968_17110"
     CDS             634..1437
                     /gene="rsmA"
                     /locus_tag="VD968_17110"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: protein motif:HMM:TIGR00755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HYE16161.1"
                     /translation="MKPRAKKSLGQNFLVDEAYAERIVAALGPREGETVVEIGPGRGA
                     LTSRLVGRVGRVVAVELDRELAPLLRERFAAHKDFTLVEADALSVDFCEAIAPAPTAR
                     VVANLPYNVSTAILQRLLGQRRCLTELVLMLQREVVERITAPPGSAERGYLSVLAEAY
                     AEARALFDVPAGAFRPVPKVWSTVARLRVRESAALADVDEGRLWRVVGAGFAQRRKTI
                     FNNLRAAPAELGVAAAGGAAKVLERAGVEPSRRAETLTLEEWAAITRAL"
     gene            complement(1461..>2310)
                     /locus_tag="VD968_17115"
     CDS             complement(1461..>2310)
                     /locus_tag="VD968_17115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16162.1"
                     /translation="ESAAAHFLGEQLSRALTERLEEGWASVVSGSWRQRHEEVKAGRK
                     KLAELNERAAAGELKIEEAWERAYWTLEFEGGDAAIPLLREIVEREPRHARASFALGS
                     LLLERGEEEGIAHVERAMEAEPDSAGQGCQMIQAYLRERGREEEAEKYRRRLLRHLDV
                     LQSAGDERAAFRDGEEIAPHEMPAEQVERLRRQLAGLGDVAAAYLARKRLEHFPDKPL
                     YVLGVETKKRWYRYRSASADSDLLHRLVTRLEIPGESFVVILDRNFSKTKKAMRQLEG
                     ALIFKQ"
BASE COUNT          312 a          821 c          809 g          368 t
ORIGIN      
        1 caagctcgcg tgctcgctcg acgggcgcat agcgacgagc acgggcgacg cgcgctggat
       61 aacgggcgag gagtcgcgcg cccgcgttca cctgctccgc cgcgagaacg acgccgtgct
      121 cgtcggcgcg gggaccgtcg cggcggacga cccgctcctg accgaccgaa gcggcctgcc
      181 ccgccgtctc cccctgcttc gcgtcgtact agacgaacgc ctctgcctta cgcccggctc
      241 gagcctcgcg cgcaccgccc accagtcgcc cgtcctcgtc tttacgtctg aggtcgccga
      301 cgaggccagg gtcgcgcaac tcgaagagtg cggcgtcgag gtcgtgcgcg acgcctcgaa
      361 cgggcgcgac ctcggagccg tgctcgaaga gcttaaccgg cgcggcgtgc agggcctgct
      421 cgtcgagggc ggggcgaacg tcgcgggcgc cttcctgcgc tcggggctcg tcaacaaggc
      481 cagcttcttc gtcgcgccca taatcctcgg cggcgacgcc atcggcgccg tcggcggcgc
      541 aggggcgctg agcgtcgcag aggccgcccg gctccgcgac gttgaaatca cacgccgcgg
      601 cgacgacgcg gaaatcaccg gctacttaaa gcagtgaagc cgcgcgcgaa aaagagtctg
      661 gggcagaact tcctggttga cgaggcttac gccgagcgca tcgtcgcggc gctggggccg
      721 cgcgagggcg agaccgtcgt ggagataggg ccgggccgcg gcgccctgac ttcgcggctg
      781 gtcggccgcg tggggcgcgt cgtggcggtc gagctcgacc gcgagctggc gccgctcctg
      841 cgcgagcgct tcgcggcgca caaagacttc acgctcgtcg aggccgacgc gctctctgtt
      901 gacttctgcg aggcgatagc gccggccccg accgcccgcg tcgtcgcgaa ccttccttac
      961 aacgtctcca cggcgatact gcaaaggctc ctcgggcaga ggcgttgcct gacggagctc
     1021 gtcctgatgt tgcagcgcga ggtggtcgag cgcatcacgg ccccgccggg ctcggcggag
     1081 cgcggctacc tgtccgtgct ggcagaggct tacgcggagg cgcgtgcctt attcgacgtg
     1141 ccggccggcg ccttccgccc ggtgccgaag gtctggagca cggtcgcgcg cctgcgcgtg
     1201 cgcgagtcgg cggcgctcgc agacgtggac gagggtcggc tgtggcgggt cgtgggcgcg
     1261 ggcttcgcgc agcggcgcaa gacgattttc aacaacctgc gcgcggcgcc cgccgagttg
     1321 ggcgtcgcgg cggcgggcgg ggccgcgaag gtcttggagc gggcgggggt cgagccctcg
     1381 cgccgcgcag agacgctcac gctcgaagag tgggccgcca tcacgcgcgc tctttgacga
     1441 agggcgcgct ctctgcctcg tcattgcttg aagatgagcg cgccttcgag ctggcgcatg
     1501 gccttcttcg tctttgagaa gttgcggtcg agtatgacga cgaagctctc gccggggatt
     1561 tcgagccgcg tgacgagcct gtgcaaaagg tcgctgtcgg cggaggcgct cctgtacctg
     1621 taccagcgct tcttcgtctc gacgccgagc acgtagagcg gcttgtcggg gaagtgctca
     1681 agacgcttgc gcgcgaggta cgcagccgcc acgtcgccga gcccggcgag ctgccggcgc
     1741 agccgctcta cctgctcggc gggcatctcg tgcggcgcaa tttcctcgcc gtcgcggaag
     1801 gccgcgcgct cgtctcccgc gctctgtagc acgtccagat gacgaaggag gcgccgccgg
     1861 tacttctccg cctcctcctc gcgcccgcgc tcgcgcaggt aagcctgtat catctggcaa
     1921 ccctgcccgg cgctgtcggg ctctgcctcc atcgcgcgct cgacgtgcgc gatgccctcc
     1981 tcctcgccgc gctccaggag cagcgagccg agcgcgaagc tcgcgcgggc gtgcctgggc
     2041 tcacgctcga caatctcgcg aagcaggggg atggcagcgt cgcccccttc aaactccaaa
     2101 gtccagtagg cgcgctccca agcctcttcg attttcaact ctccggcggc cgctctctca
     2161 ttcagctcgg ccagcttctt gcgcccggcc ttcacctcct cgtggcgctg gcgccagctc
     2221 ccggagacga ccgacgccca gccctcttcg aggcgctctg tgagcgcgcg gctcaactgc
     2281 tcgccgagga agtgcgcggc ggcgctctcg
//
LOCUS       DASPKR010000640        11533 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_739194, whole genome shotgun sequence.
ACCESSION   DASPKR010000640 DASPKR010000000
VERSION     DASPKR010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11533)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11533
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_739194"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..512
                     /locus_tag="VD968_17120"
     CDS             <1..512
                     /locus_tag="VD968_17120"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE16163.1"
                     /translation="AAADADSRGAAAASARAGRLRLLVVDDDESVRELLREILEAEGH
                     AVSAASSGPEALSLFRPGDYDAVFTDIGMPGMSGWEFAEAVRRLDGAVPLAVITGWGE
                     AVGSERQREAQVDWVVTKPFNATDIVGLAANVAGRLRGERVEEGLHFAQARPAAAELS
                     AVTPARRPA"
     gene            complement(487..876)
                     /locus_tag="VD968_17125"
     CDS             complement(487..876)
                     /locus_tag="VD968_17125"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE16164.1"
                     /translation="MAAILIVDDDDAVRDTLYDLFSDDHLCHAANTAEMALSFLQEQS
                     YDVVLTDISMPGLSGLELLGLLRQSQPGTPVIIISGIGDRSHAEGLTRLGAFDYILKP
                     FRLDAVEESVARALDHGRALRRGGERA"
     gene            complement(1036..3018)
                     /locus_tag="VD968_17130"
     CDS             complement(1036..3018)
                     /locus_tag="VD968_17130"
                     /inference="COORDINATES: protein motif:HMM:NF024833.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YMGG-like glycine zipper-containing protein"
                     /protein_id="HYE16165.1"
                     /translation="MNRIRQTITLALVVALLGLGLAPAAQAQTQPYRLSDRQVGDLIR
                     RLETSTDRFRASLDSALDRTRYDGTRAEDNINQFMRNFEGATDRLRERFDRRASVAAD
                     VEFVLQQAVDINRFVMANRLTSRVRSDWALVRSDLEAVARAYNVVPNWNAQVGGYNGQ
                     STYGRPTRINDRQVEVILTRVEQSADRFRRSLDNALDRTRYDGTRAEDNINQFVRNFE
                     SATDQLRSRFNSRNSAAADVENVLRQATYIDDFMTRHSLARRAENDWSLLKADLNQLA
                     TAYSVAWTWDARSLPYGGTTAGTTTGSGSVFSPGGQLTGTYRLDVSRSDDARRITDEA
                     TRTLPFSERQRIADNIMRRLEAPEMLALERRGQTVTVASSRAPQTSFEADNLERREQL
                     PNGTYSRVTAQLSGERLIVRSAGNRATDFNVTFEPMDGGRRLLVTREIWNERLGANPI
                     IVRNYYDRTSDVAQWSVFGGSTGYTGDVSATPAGDFVISDGQMVIATLDSNVTTRSAQ
                     VGDRVTLTVREPSQFAGSTIEGRVASVNRSGRVTGRAEMSFDFDTIRLRDGRTYQFAG
                     FVETVRTASGDTVSVDTESTVRDDSQGNKTAQRAAIGTAVGAIIGAIAGGGKGAAIGA
                     IVGAGAGAGSVYVQGREDLDLASGTEFTIRASAPNR"
     gene            3487..3924
                     /locus_tag="VD968_17135"
     CDS             3487..3924
                     /locus_tag="VD968_17135"
                     /inference="COORDINATES: protein motif:HMM:NF014608.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HYE16166.1"
                     /translation="MGETSAGAVIHSAGDGLFVAITPSGHAQVLETDSARASAATPAE
                     LLLVALGGCTAVDVISILKKKRERVTGYRVEVRGERRDEHPRAFTRMEVRHVIRGRGV
                     SEKAVASAIELSETKYCSVAATLRPGVEIVTTYEITEEPAETD"
     gene            4032..5519
                     /locus_tag="VD968_17140"
     CDS             4032..5519
                     /locus_tag="VD968_17140"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HYE16167.1"
                     /translation="MALLAQQALACAAGLLLALSCARVAAPRPAAEAPPPQFYSEEAP
                     ALSAEDQGQDALAATRRADGGPRDSGEELPRLTPQEHMRRAAVYQANRAFDEAREHWR
                     TLIERFPSDENVPAAHFGIGRTLFQEKRYEEALPVFRRLGETYIETPAGRDGFYYVAA
                     TLLRMDRPGEAAARYAEYAERFPEGERIENAYLNIIDSLREAGRPEESLPWIERTRAR
                     FRGTATDANALFARLRLDISRGDWQSALRSVEELSRVSLTRAVNTNASELAYLRAFSL
                     EKSGQKQQAARAYEGIADGIGSYFGGLATARLSKMGGAAKSSALAREGRVRAEAKRSA
                     AEYPAPYRDALVRAAREQKIDPRLMLAIMRQESGFKAQAKSGAGARGLMQMTPDVGAK
                     YAALLKLTLQSEDDLYRPEINIRLAAAYIGELERMFPALPEAVAASYNGGEDSVARWV
                     RRAVHDDPGIFTAEVGFTETKDYVHKVMANYRAYKLLYTEDLKPR"
     gene            complement(5572..6456)
                     /locus_tag="VD968_17145"
     CDS             complement(5572..6456)
                     /locus_tag="VD968_17145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16168.1"
                     /translation="MRGFGSLRSGAACALAVAALVFQAGGSAAAQRRPPVVVPQRGAF
                     EVEVVVGGRTLERLHARGRTYVEALEGEEYELRVRNPLPVRVAVALSVDGLSTIDARR
                     SSAWESSKWVIEPYQTITVSGWQMSRSHARRFYFTTERDSYAARLGRASDLGVITAVF
                     FREAAPRTVPVLPPASREERNRGGDADELRGEADNSAGSAARSGSSAQMRAPRPKDDD
                     YAATGIGRAVGHGVTWTTMSLERGPAAEVTIRYEYRDALVRLGVLPRPRYEGDDALRR
                     RERARGFSPEPGFCPEPE"
     gene            complement(6556..7050)
                     /locus_tag="VD968_17150"
     CDS             complement(6556..7050)
                     /locus_tag="VD968_17150"
                     /inference="COORDINATES: protein motif:HMM:NF019499.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin K epoxide reductase family protein"
                     /protein_id="HYE16169.1"
                     /translation="MSAGGETFDAGSTASIEPARAAPGRGWDAAVALVALLGLADAIY
                     LTVHHFTNRNVRCMVVSGCDEVLQSTYSTVAGSFPLAALGALAYFAVFSLATLAAFGY
                     GGVRALLSVTVGVMFLFTLWLLYLQGFVIKAFCTYCLISAAVTTTLALLLVARRLKHP
                     SPRR"
     gene            complement(7047..7811)
                     /locus_tag="VD968_17155"
     CDS             complement(7047..7811)
                     /locus_tag="VD968_17155"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HYE16170.1"
                     /translation="MSRKQPEPKKSYLPFVIIGGVLAVAIVAALLLMRTGGDSGSTAN
                     TQNPTPAKNSASAGATPGAASPTPATRFEQPGAPSPNAVGPANAPVVLEEFSDFQCPA
                     CARLHPSLKKIEDDYGSRVRVVFRHFPLQQMHKNAFSAARAAEAAGLQGKFWEMHDRL
                     FETQNEWKDSPEPRPLFAMFASRLGLNVEKFRADMERQDIADRVRADYNRGMSLGVGG
                     TPTIFLNGRELPAEQTLADANLRAQIDSELARKGVK"
     gene            8012..8668
                     /locus_tag="VD968_17160"
     CDS             8012..8668
                     /locus_tag="VD968_17160"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYE16171.1"
                     /translation="MNHSEATTTRLPDSPVSIYDRFTNLYDLMFRVNGYRRSMERYLR
                     ETPLPLAAGARVLDAGCGTGLLTLALLRVLRRPANVTAVDLSARSLQTARRAVSKLAR
                     GSRHKVTFLQADALSLPFADESFDCVVTSGVLEYLPLDKGLAELARVLAPGGQLLFLP
                     VRPSPMSRLLELMFRFKAHPPDEVMRATGRHFTLIEHYRFPPHETIGWTKSIVLAQKQ
                     "
     gene            complement(8720..9664)
                     /locus_tag="VD968_17165"
     CDS             complement(8720..9664)
                     /locus_tag="VD968_17165"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HYE16172.1"
                     /translation="MKKVIRVTAALLVIFSAGRAALAQGEAPPSPELQKIVDAAARAA
                     LEKFAAKGFAEKNLAVTLLDLTDPQNVRRASFRGSEPIYPASVVKLFYLAAAHRWMED
                     GRLKETEELNRALRDMIVDSSNDATHFIVDALSGVSNGAELPDAEFRKWSEKRGAVQR
                     YFASLGYTGINVVQKPWCEGPYGRERQFLGPKFENRNKLTTDATARLLADIVLGRAVT
                     PARSARMLELMKRDFTGKSDDPDDQAHGFTGIALEEGMRYWSKAGWTSTTRHDAAYLE
                     LPGGRRIVLVTFTTDHAKERDIIPTVARSVIKAVSNKQ"
     gene            complement(9676..10956)
                     /locus_tag="VD968_17170"
     CDS             complement(9676..10956)
                     /locus_tag="VD968_17170"
                     /inference="COORDINATES: protein motif:HMM:NF015573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015501 - glutamate:sodium symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015813 - L-glutamate transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HYE16173.1"
                     /translation="MEVTAIEGLRTVRLDLIMTLALAALLLFAGSFVQRRVRLFERSS
                     IPAAAIGGLLFALLALALRRQGALGFSLDTTLRGPLQIAFFTTIGLSATATLLRSGGW
                     RMGLFWAIATVSAVVQNAVGMALALGLGAPVALGIVCGALTLSGGPATAQAWAAEFEA
                     LGIEGAGAVSIASALFGIFTACIVGNPVATALIRRFKLARARGAAPARGEGEEEFWAL
                     SPTVSAKVEGEEDARVEDLKAPDGPALLHNLLVILALMGLGALLSLWIKSTGFTLPDY
                     IGAMILAAAARNLDDRTGWLRLNPRAVEALGGVALALFLVIALMSLELWRIAGLALPM
                     LIILAVQVVVMVAFAVLVTFVVMGRDYEAAVTASGHIGFGLGITANAVANMEALTARY
                     APAPRSFMIVPVVGAFFIDFSNLLVITVFVNFLK"
     gene            complement(10974..>11533)
                     /locus_tag="VD968_17175"
     CDS             complement(10974..>11533)
                     /locus_tag="VD968_17175"
                     /inference="COORDINATES: protein motif:HMM:NF019581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE16174.1"
                     /translation="HVARKHGERDRRFRIEHAQHLRKEEIAEFARQKVLASMQPYHAI
                     DDGRWAEKRIGPERAKGTYAFRSLLDAGAALAFGSDWTVAPLDPLLGIYAAVTRRTLD
                     GKNPSGWVPEQKITVEEAVRAYTVGSAFAEFAEAEKGTVAPGKLADLVVLDSDIFKIN
                     PADIEKARVRLTVMDGRVVYEAGKR"
BASE COUNT         1825 a         3900 c         3922 g         1886 t
ORIGIN      
        1 cggctgctgc ggatgccgac tcgcgcggcg cggcggcggc aagcgcgcgc gcgggccgcc
       61 tgcggctcct cgtcgttgac gacgacgagt cggtacgcga gcttctgcgc gagattttgg
      121 aagccgaagg ccacgcggtg agcgccgcct caagcggccc cgaagccctg tcgctcttcc
      181 ggcccggcga ctacgacgcg gtcttcactg acataggcat gccgggcatg agcggttggg
      241 agttcgcaga ggccgtgcgc aggctggacg gggccgtccc gctcgccgta atcactggat
      301 ggggcgaggc cgtcggctcc gagcgccagc gcgaggcgca ggttgactgg gtggtgacga
      361 agcccttcaa cgcaacagac atcgtcggac tggccgcgaa cgtggcgggc cggctgcgcg
      421 gcgagcgcgt ggaggagggc cttcacttcg cgcaggcgcg ccccgccgcc gcggagcttt
      481 cggccgttac gcccgctcgc cgccccgcct gagagcgcgc ccgtggtcga gggcgcgggc
      541 gacgctctcc tcgacggcgt cgagccggaa cggcttcagt atgtaatcga acgcgcccag
      601 acgcgtgagc ccttcggcgt gcgagcggtc gccgatgccg gagatgatta tgacgggcgt
      661 ccccggctgg ctctggcgca gcaggcctag gagctccagc ccgctcaggc ccggcattga
      721 aatgtcggtc agcaccacgt cgtaggactg ctcctggagg aacgagaggg ccatctccgc
      781 ggtgttagcc gcgtggcaca ggtggtcgtc agagaagagg tcgtagaggg tgtcgcgaac
      841 agcgtcgtcg tcgtcaacga taaggatggc tgccataagc acacgtcgga ggcgtaaacg
      901 tgctcgaacg aggaggtgag gtgaagggac gggctgaatc ctagcacagc cgcgcgcgcg
      961 tttcacggaa aaaaggcccg gagtctctcg tcggagaccc cgggccgtcg taatttgagc
     1021 cgcgcgtctg cggctttacc tgttgggtgc cgacgcgcgt atggtgaact cggtgccgct
     1081 ggcgaggtcg aggtcttcgc gcccctgcac gtaaaccgag cccgcgccgg cgccggcgcc
     1141 gacgattgcg cctatggcgg cgcccttacc gccgcccgcg atggcgccga tgatcgcgcc
     1201 gaccgcggtg cctatggccg cgcgctgcgc ggtcttgttg ccctggctgt cgtcgcgcac
     1261 ggtgctctcg gtgtcaacgc tgacggtgtc gcccgaggcg gtgcgcacgg tctcgacgaa
     1321 gcccgcgaac tggtaggtgc gcccgtcgcg caggcgtatg gtgtcgaagt cgaacgacat
     1381 ctcggcgcgc cccgtcacgc ggcccgagcg gttgacgcta gcaacgcgcc cctcgatggt
     1441 cgagccggcg aactgcgacg gctcgcgaac cgtcagcgtg acgcggtcgc cgacctgcgc
     1501 cgagcgggtc gtcacgttgg agtcgagcgt ggctatgacc atctgcccgt cggagattac
     1561 gaagtcgccc gcgggcgtcg cgctcacgtc gcccgtgtag cccgtcgagc ccccgaagac
     1621 gctccactgc gcaacgtcgg acgtgcggtc gtagtagttt cgcacgatga tcgggttggc
     1681 gcccaggcgc tcgttccaga tctcgcgcgt taccagcagg cggcggccgc cgtccatcgg
     1741 ctcgaaggtc acgttgaagt cggtggcgcg gttgccggcc gagcggacta tcaggcgctc
     1801 gccggagagc tgcgccgtca cgcgcgagta ggtaccgttc gggagctgct cgcggcgctc
     1861 gaggttgtcg gcctcgaacg aggtctgcgg cgcgcgcgag gaggccacgg tcacggtctg
     1921 gccgcggcgc tcgagcgcga gcatctcggg cgcctcgagc ctgcgcatga tgttatcggc
     1981 gatgcgctgg cgctccgaga agggcagcgt gcgcgtggcc tcgtcggtta tgcggcgggc
     2041 gtcgtcgctg cgcgaaacgt cgagccggta tgtgcccgtt agctgcccgc ccggcgagaa
     2101 gacgctgccc gagcctgtag tcgttccggc ggtcgtcccg ccgtagggga ggctgcgggc
     2161 gtcccaagtc cacgcgacgc tgtaggcggt ggcgagctgg ttgaggtcgg ccttaaggag
     2221 cgaccagtcg ttctcggccc ggcgcgcgag cgagtggcgc gtcatgaagt cgtcaatgta
     2281 tgtggcctgg cgcagcacgt tctccacgtc ggcggccgcg gagttgcgcg agttgaagcg
     2341 gctgcggagc tggtcggtcg cgctctcgaa gttgcggacg aactggttga tgttgtcctc
     2401 ggcgcgcgtg ccgtcgtagc gcgtgcggtc gagcgcgtta tccaggctcc ggcggaagcg
     2461 gtctgcgctc tgctcgacgc gggtcagtat cacctctacc tgccggtcgt taatgcgggt
     2521 cggccgcccg taggtgctct ggccgttgta gccgcccacc tgcgcattcc agttcggcac
     2581 gacgttgtag gcgcgcgcca cggcttcgag gtctgagcgc acgagcgccc agtcgctgcg
     2641 cacgcgcgac gttaggcggt tggccatcac gaagcggttg atgtcaacgg cctgctggag
     2701 gacgaactca acgtcggctg ccaccgaggc gcggcggtcg aagcgctcgc gcaggcggtc
     2761 ggtcgcgccc tcgaagttgc gcatgaactg gttgatgttg tcctcggcgc gcgtgccgtc
     2821 gtagcgcgtg cggtcgagcg cgctgtcgag gctggccctg aacctgtcgg tcgaggtctc
     2881 tagccggcgg atcaggtcgc ccacctgccg gtcgctcagg cggtagggct gcgtctgggc
     2941 ctgcgcggcc ggcgcgagcc cgagccccaa gagcgccacg acgagcgcca gcgtgatcgt
     3001 ctgccttatt ctgttcatca ctcttccctc catcttatgt ttacaacgaa tctcttctat
     3061 cagaattgtc cgagtcggcg gccctcatcg agggatcgcc cgccttgccc ggcatccgct
     3121 ggtggggaga tgcgtcatca cttcggagag atagatcacg ggcaaaggtc acctcaagtg
     3181 ttgcgacatg caagcaccgt gccttcggcc gggaacagtt aaacagcgcg gggagtttcg
     3241 gggagtgcga ataccggctg tgtgattcgc gtttataaag ccgggttgcc gaaaagactt
     3301 ttgcgcgcga cccggccgcg cagactactc acctgcggct ctgtacgaaa cccggcccgc
     3361 atgttcgggt agcatacaac ggcggcaagt ctcgttttct tcccgttttc gggacgccgg
     3421 gccgcaaatg ccggctcgcg cgcgacgtgc tatgcttgac cggcaaggag cggaggtgtc
     3481 aggttgatgg gtgaaacttc ggcgggcgcc gtcatacatt cggcgggcga cggcctcttc
     3541 gtcgccataa ctccgagcgg ccacgcgcag gttctcgaga ccgactcggc gcgagcgagc
     3601 gccgcaactc cggcggagct gctgctcgtc gcgctgggcg gctgcacggc cgttgacgtt
     3661 atctcgattc tcaagaagaa gcgcgagcgc gtcaccggct accgcgtcga agtgcgcggc
     3721 gagcggcgag acgagcaccc gcgcgccttc acgcgcatgg aggtgcgaca cgtcatccgc
     3781 ggccgcgggg tgtcggagaa ggccgtcgcc tccgccatag agctgtccga gacgaagtat
     3841 tgcagcgtcg ccgcgacgct caggcccggc gtcgagatag tcacgaccta cgagattacc
     3901 gaggagcccg cagaaaccga ctgatggcgc cgcgtcgaag agacgacgag gttacttccc
     3961 tccctcagcg agcatccaag aggtcgtccg tgccggcccc gaagcccgag acaattcaca
     4021 gaaggttgaa gatggcacta ctcgcacagc aagccctcgc ctgcgccgcc ggcctcctgc
     4081 tcgcgctctc gtgcgcgcga gtggccgcgc cgcgccccgc ggccgaagcg cccccgccgc
     4141 agttttactc ggaggaggcg ccggcgcttt cggccgaaga ccaagggcag gacgcgctag
     4201 ccgcgacccg gcgcgccgac ggcgggcctc gcgattcggg cgaagaactt cctcggctca
     4261 cgccgcagga gcacatgcgc cgcgccgccg tctatcaggc caaccgcgcc ttcgacgagg
     4321 cgcgcgagca ctggcgcacg ctcatcgagc ggttcccctc ggacgagaac gtgccggccg
     4381 cgcacttcgg cataggccgc acgctcttcc aggagaagcg ctacgaggag gcgctgcccg
     4441 tcttccgccg cctcggcgag acttacatcg aaacgcccgc cgggcgcgac ggcttctact
     4501 acgtcgccgc cacactcctt cgcatggatc gccccggcga ggccgccgcg cgctacgcag
     4561 agtacgccga gcgattcccc gaaggcgagc gcatagagaa cgcctacctc aacatcattg
     4621 actcgctgcg cgaggccggg cgccccgagg agtccctgcc gtggatagag cgcacgcgcg
     4681 cgcgcttcag ggggacggcg acggacgcga acgcgctttt cgcgcgcctg cgcctcgaca
     4741 tctcgcgcgg cgactggcag tctgccctgc gctcggtcga ggagttgagc cgcgtcagtc
     4801 ttacgcgcgc cgtcaacacg aacgcctcgg agcttgcgta cctgcgtgcc ttcagcctcg
     4861 aaaagtcggg gcagaagcag caggccgcgc gcgcttacga ggggatagcc gacggcatcg
     4921 gctcttactt cggcgggctc gcgacggcgc ggctaagcaa gatgggcggg gcggctaagt
     4981 cttccgcgct ggcgcgcgag gggcgcgtgc gcgcggaggc gaagcgctcg gcggccgagt
     5041 accccgcgcc ctaccgcgac gctctcgtgc gcgccgcgcg cgagcagaag attgacccgc
     5101 gcctgatgct cgccatcatg cggcaggaga gcgggttcaa ggcgcaggcg aagtcgggcg
     5161 cgggcgcgcg cggcctcatg cagatgacgc cggacgtcgg tgccaagtac gccgccctcc
     5221 tgaagctcac cctccagagc gaggacgacc tctaccgccc cgagataaat atacggctcg
     5281 cggccgcata catcggcgag ctggaacgca tgttccccgc tctgcccgag gccgtcgcgg
     5341 cctcctacaa cggcggcgag gacagcgtcg cgcgctgggt gcgccgcgcc gtccatgacg
     5401 accccggcat cttcaccgcc gaggtcggct tcaccgagac gaaggactac gtccacaaag
     5461 tcatggcgaa ctaccgcgcc tacaagctcc tctacaccga agacctcaag cccagatagg
     5521 ctagaggcta gtgaagaagt agagccttat cactagtctc tagcctcttc tttactccgg
     5581 ctcggggcag aagccgggct cgggcgagaa gccgcgtgcg cgctcgcggc ggcggagtgc
     5641 gtcgtcgcct tcgtagcgcg ggcgcgggag cacgccgagg cgcacgagcg cgtcgcggta
     5701 ctcgtagcgg atagtcacct cggcggctgg gccgcgctca aggctcatcg tcgtccaagt
     5761 cacgccgtgg cctaccgcac ggcctatacc tgtggcggcg tagtcgtcat ctttagggcg
     5821 cggcgcgcgc atctgcgcgc tactgccgga gcgggcggca ctccctgccg aattatctgc
     5881 ctcgccccgc agttcgtcgg cgtcgccgcc cctattcctc tcttcgcggc tggccggcgg
     5941 caggacaggc acggtgcgcg gcgcggcctc gcggaagaag acggccgtga tgacgccgag
     6001 gtcggaggcg cgcccgagcc gcgcggcgta agagtcgcgc tcggtcgtga agtagaagcg
     6061 gcgcgcgtgg ctcctgctca tctgccagcc gctcactgtt atcgtctggt agggctctat
     6121 cacccacttg ctcgactccc acgcggacga gcgccgcgcg tcaatcgtgc tcagcccgtc
     6181 aaccgagagc gcgacggcta cgcgcaccgg cagggggttc ctcaccctca gctcgtactc
     6241 ctcgccctcc aacgcctcga cgtatgtgcg cccccttgcg tggagccttt cgagcgtgcg
     6301 cccgccgact actacctcga cctcgaacgc cccgcgctgt ggcacaacca ccggcggcct
     6361 gcgctgagcc gcggccgagc cccccgcctg aaagacgagc gccgcgaccg cgagcgcgca
     6421 cgccgcccct gaccgtaaag acccgaatcc tctcatcacc caatccctcc tctcaaacag
     6481 actgcggccc cgcttcagga acgcgcgggc gcccccgcgc ttgcgccgcg gcggggcctt
     6541 ttctcactcg ggcttttacc ggcggggaga ggggtgtttc agtcggcgag cgacgagcag
     6601 cagcgcgagc gtcgtcgtca cggcggcgga gatgaggcag taggtgcaga aggctttaat
     6661 gacaaagccc tgtaggtata ggagccagag cgtgaagagg aacatgacgc cgaccgtcac
     6721 gctcagcagc gccctcacgc cgccgtagcc gaaggcagcg agcgttgcga ggctgaagac
     6781 tgcgaaatag gcgagcgcgc cgagcgcggc gagcgggaac gagcccgcca cggtcgagta
     6841 ggtgctctgc aagacctcgt cgcagccgga gacgaccatg caccggacgt tccggttagt
     6901 gaagtggtgg acggtcaggt aaatcgcgtc ggccagccca agaagcgcga cgagtgcgac
     6961 ggccgcgtcc cagccgcggc ccggcgcggc gcgcgcgggc tcgatagatg cagtcgagcc
     7021 cgcgtcgaaa gtctcgcccc ccgcgctcac ttgactccct tcctggcaag ctctgagtct
     7081 atctgcgcgc gcaggttcgc gtcggcgagc gtctgctcgg cgggaagctc gcgcccgttc
     7141 aggaagatgg tgggcgtacc cccgacgcca agagacatgc cgcggttgta gtcggcgcgc
     7201 acgcggtctg cgatgtcctg cctctccatg tcggccctga acttctcgac gttgaggccc
     7261 agacggctag cgaacatcgc gaacaggggg cgcggctccg gcgagtcctt ccactcgttc
     7321 tgcgtctcga agaggcggtc gtgcatctcc cagaacttgc cttgcaggcc ggcggcctcc
     7381 gccgcccgcg cggccgagaa ggcgttcttg tgcatctgct gtagggggaa gtgtcggaag
     7441 acgacgcgga cgcggctgcc gtagtcgtcc tcgatcttct tgagcgaagg gtgcaggcgc
     7501 gcgcacgctg ggcactggaa gtcgctgaac tcttcgagga ctacgggcgc gttcgccggg
     7561 ccgacggcgt tgggcgaggg cgcgcccggc tgctcgaacc tagtcgccgg agtcgggctc
     7621 gcggcgccgg gcgtcgcgcc cgccgaggcc gagttcttcg cgggcgtggg gttctgcgtg
     7681 ttagcggtcg agccggagtc gccgcccgtg cgcatcaaca gcagcgccgc cacaatggct
     7741 acggctagca cgccgccgat gatgacgaaa ggcaggtaac tcttcttcgg ctcaggctgt
     7801 ttgcggctca tcaggttgtg caccttcggt gaagttataa attttgcgcc gacaatggta
     7861 gcaccggccc ccgccgacgg cgaaacgccc tcgggggcgg cttaaggaaa accgagattt
     7921 gtgttaactt ttgcgaaccc tgagcagttc ggcagtcgcg acaggccccc ttaaagccgg
     7981 acgaacccct tcgattgacg cacggaggct aatgaaccac agcgaggcaa ctaccacacg
     8041 actgcccgac agcccggtct ccatctacga ccgcttcacg aacctttacg acctgatgtt
     8101 ccgggtcaac ggctaccgcc gctcgatgga gcgatacctt cgcgagaccc ccctgccgct
     8161 cgcggcaggc gcgcgcgtgc tcgacgcggg ctgcggcacg gggctgctga cgctggcgct
     8221 cttgcgcgtg ctgcgcaggc ccgcgaacgt cacggccgtt gacctctccg cgcgctcgct
     8281 acagaccgcg cgccgcgccg tctcgaagct cgcgcgcggc tcccggcaca aggtcacgtt
     8341 ccttcaggcc gacgcgctat cgctgccctt cgcggacgag tcgttcgact gcgtcgtgac
     8401 gagcggcgtg ctcgaatacc tcccgctcga caaggggctc gccgagctag cgcgcgtgct
     8461 cgcgcccggc ggccaactcc tcttcctgcc cgtcaggccc tcgcccatgt cccgcctgct
     8521 cgagcttatg ttccgcttca aggcccaccc gcccgacgag gtcatgcgcg ccaccggtcg
     8581 ccacttcacc ctcatcgagc actaccgctt ccccccgcac gagacaatcg gctggacgaa
     8641 atcaatcgtg ctggcacaga agcagtaggc agtcggctac cagccttcag cttttttgtc
     8701 tttgccgaat gctgacagct tactgcttat tgcttactgc ctttatcacc gagcgcgcga
     8761 ccgtcgggat gatgtcgcgc tctttggcgt ggtcggtggt gaaggtgacg aggacgatgc
     8821 ggcggccgcc cgggagctct aggtatgcgg cgtcgtggcg cgtcgtgctc gtccagcctg
     8881 ccttcgacca gtagcgcatg ccctcttcga gcgcaatccc cgtgaagccg tgcgcctggt
     8941 cgtccgggtc gtccgacttg cctgtgaagt cgcgcttcat aagttccagc atccgggcgc
     9001 ttctggcggg cgtgacggcg cggccgagca cgatatccgc gaggaggcgc gccgtcgcgt
     9061 cggtcgtgag cttgttgcgg ttctcgaact tcgggccgag gaactggcgc tcgcgcccgt
     9121 aaggcccctc gcaccacggc ttctgcacga cgttgatgcc cgtgtagccg agcgacgcga
     9181 agtagcgttg gacggcgccg cgcttctcgc tccacttcct gaactccgcg tcgggcagct
     9241 ccgcgccgtt cgacacgccc gagagcgcgt ccacgatgaa gtgagtagcg tcgttcgacg
     9301 agtcaacgat catgtcgcgc agcgcccggt tcagctcctc cgtctctttt agcctgccgt
     9361 cctccatcca acggtgcgcc gcggcgaggt agaacagctt gacgacgctc gccgggtaga
     9421 tgggctccga gccgcggaag ctcgcgcggc gcacgttctg cgggtctgtc aaatcgagca
     9481 gggtaacggc aaggttcttc tccgcgaagc ccttggctgc gaacttttca agcgccgcgc
     9541 gcgcggcggc gtcaacgatc ttctgtagct ccggcgacgg cggcgcctcg ccctgcgcga
     9601 gggcggctcg gcccgccgag aagattacga gcagcgccgc cgtgactctt attactttct
     9661 tcatgttgcc ctggcctatt ttaagaagtt gacgaagacg gtgatgacga gcaggttaga
     9721 gaagtctatg aagaaggcgc cgactacggg gacgatcatg aagctgcgcg gcgcgggcgc
     9781 gtagcgcgcc gtgagcgcct ccatgttggc gacggcgttg gccgtaatcc cgaggccgaa
     9841 gcctatgtgg ccgctcgccg tcacggccgc ctcgtagtcg cgccccatca cgacgaacgt
     9901 cacgagcacg gcgaaggcca ccatcacgac tacttgaact gcgagaatta tgagcatcgg
     9961 gagcgcgagg ccggctatcc tccaaagttc caaactcatc agcgcaatta cgaggaagag
    10021 cgcgagggcc acgccgccga gcgcctcgac ggcgcgcggg ttgagccgca accagcccgt
    10081 gcggtcgtcg aggttccgcg ccgcggccgc gaggatcatc gcgccgatgt agtcgggcag
    10141 cgtaaacccc gtgctcttta tccagaggct cagcagcgcg cccaggccca tgagcgcgag
    10201 tatgacgagc aggttatgaa gcagcgccgg gccgtccggc gccttcaagt cttcaacgcg
    10261 cgcgtcctct tccccctcaa ctttagcgct aaccgtcggg cttaaagccc agaactcctc
    10321 ctcgccctcg ccgcgcgccg gggcggcgcc gcgtgcgcgc gcgagtttga agcggcgtat
    10381 gagcgcggtg gctacggggt tgccgacgat gcaggccgta aatatgccga agagcgccga
    10441 cgcgatgctc acggcgcccg cgccctcgat gccgagcgcc tcgaactccg cggcccacgc
    10501 ctgcgccgtc gcgggcccgc ccgagagcgt cagcgccccg cagacgatgc cgagcgcgac
    10561 cggcgcgccc aagcccagcg ccagcgccat ccccacggcg ttctgcacga cggccgacac
    10621 cgtagcaatc gcccagaaga gccccatgcg ccagccgccc gagcgcagta gcgtcgccgt
    10681 agcgctcagg ccgatggtcg tgaagaaggc tatttgaagc ggcccccgaa gtgtcgtgtc
    10741 gagcgagaac cctaacgcgc cctgccgccg cagcgcgagg gcgagcagcg cgaagaggag
    10801 cccgccgatt gccgctgccg ggatgctgga gcgctcgaag aggcgcactc gccgctgtac
    10861 gaaagagccc gcgaagagca gcagggccgc cagcgcgagc gtcattatca ggtcgagcct
    10921 gaccgtccgc agaccttcga tggccgtgac ttccaaccgg cgccgcctcc cgtctatctc
    10981 ttacccgctt cgtaaaccac gcggccgtcc atgacggtca aacggacgcg cgccttctct
    11041 atgtcggcgg ggttgatctt gaagatgtcg ctgtcgagca ccactaggtc ggcgagcttg
    11101 ccgggcgcga cggttccctt ctcggcttca gcgaactcgg cgaaggccga gccgacggtg
    11161 tacgcgcgca cggcctcctc gaccgtaatc ttctgctcgg gaacccagcc cgacgggttc
    11221 ttgccgtcga gcgtgcggcg cgtgacggcc gcgtagatgc ctagaagggg gtcgagcggc
    11281 gccacagtcc agtcggagcc gaaggcgagc gcggcgcccg cgtcgaggag cgagcggaaa
    11341 gcgtaagtgc ctttggcgcg ctccgggcct atgcgcttct cggcccagcg cccgtcgtct
    11401 atggcgtggt agggctgcat cgaggcgagg accttctggc gggcgaactc ggctatctct
    11461 tccttgcgga ggtgctgcgc gtgctcgatg cggaagcggc ggtcgcgctc gccgtgcttg
    11521 cgcgcgacat gct
//
LOCUS       DASPKR010000641         4260 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_883288, whole genome shotgun sequence.
ACCESSION   DASPKR010000641 DASPKR010000000
VERSION     DASPKR010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4260)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4260
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_883288"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VD968_17180"
     CDS             <1..201
                     /locus_tag="VD968_17180"
                     /inference="COORDINATES: protein motif:HMM:NF023380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3471 domain-containing protein"
                     /protein_id="HYE16175.1"
                     /translation="DLEHWHFDTFRIKWRESIVYPFPRGFVTFTLDQQGRASEMKIDV
                     PNPDFDFTELEFKRAPAAQAAR"
     gene            272..757
                     /locus_tag="VD968_17185"
     CDS             272..757
                     /locus_tag="VD968_17185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16176.1"
                     /translation="MKRTFRRLCSLLALTLVLVSTTATPPASAEAVVLTDNQTVPIEF
                     VATSCTGETVVINGESHVLFQAVGTPGGRFENHTHIQFHLQGTSASGTLYTANETVNG
                     HFTGEGDGPQGTFTSVGNLTLVSQGSGDNLLLRTRIHTTVNDNGEITAVVFEFEVVCQ
                     G"
     gene            complement(870..1622)
                     /gene="nfi"
                     /locus_tag="VD968_17190"
     CDS             complement(870..1622)
                     /gene="nfi"
                     /locus_tag="VD968_17190"
                     /EC_number="3.1.21.7"
                     /inference="COORDINATES: protein motif:HMM:NF008629.1"
                     /note="cleaves DNA at apurinic or apyrimidinic sites;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease V"
                     /protein_id="HYE16177.1"
                     /translation="MARFEQLHGWSLTPGEAVALQKRLRERVRIVPLKKRVETVAGAD
                     ISFNKFDPTIYTGIVVLRLPSLEVVEEVGLVGETRFPYVPGLLSFRESPSVLEAWSKL
                     KTEPDAVMFDGQGLAHPRRVGIASHVGLLIDRPTFGCAKSVLVGRYEEPAEGRGSWSP
                     LVDKGETVGAALRTKNRVQPIFVSPGHLIDLEGAIDLTLRCDGGYRQPEPTRRAHLLV
                     NALRRGERSPTSEETGGTEGGGGSGAQGSFGF"
     gene            complement(1636..3258)
                     /gene="nadB"
                     /locus_tag="VD968_17195"
     CDS             complement(1636..3258)
                     /gene="nadB"
                     /locus_tag="VD968_17195"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF005701.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008734 - L-aspartate oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HYE16178.1"
                     /translation="MSLETDFVVVGSGIAGLRAALELAGAGARVTVLTKERREESNTE
                     YAQGGIAVALSDTDEAALHEEDTIGAGAGLCDERAVEVLVGEGPRYIGELIGWGAEFD
                     REGGRLMFTREAAHSRPRILHAHGDATGREIVRALLARAGRERNVSFLAHAETESLVV
                     EGGRVVGVRYLDPLVRSSRTLLARGVVLASGGAGMLFQHTTNPAVATGDGMAMAFDAG
                     AELADMEFVQFHPTALNLEGAPRFLLSEALRGEGGVLRNASGRRFMPRYHDSAELAPR
                     DVVTRSIVSEMERTATRTVFLDMTAFDARSLRRRFPKIYATCLRYGLDLAREPIPVSP
                     AAHYCMGGVRTDLEGRTSLPGLYAAGEVACTGVHGANRLASNSLLEGLVFGARAGRAA
                     ALDLAGVKAGASARDAEPASETSPEDLSRLGPASLAVRKRVRRLMWERVGILRSRPSL
                     ERALREFGQIASAPLRPGPRNFLTVATLIARSALWREESRGGHFRVDFPRRDDARFRA
                     HSVIRKGAEVSASETIDFGEAVAGRAAEPSAL"
     gene            3505..>4260
                     /locus_tag="VD968_17200"
     CDS             3505..>4260
                     /locus_tag="VD968_17200"
                     /inference="COORDINATES: protein motif:HMM:NF012879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE16179.1"
                     /translation="MFWRRLLASALVVLLSAPALPAFAQRRRGGSAAQTAKAGARVLP
                     PINYTEFFLPNGLRVILHEDHSTPIVAVNVWYHVGSKNEVPGRTGFAHLFEHMMFQGS
                     KNYNNDYFKPLQEAGAVLNGSTNPDRTNYWEVLPSNFLELAIFMEADRMGGLLEAMTE
                     EKLANQRDVVKNEKRQNYDNRPYGLVGAKINETLYPPDHPYHWLTIGSLDDLTAASME
                     DVKGFFRRYYVPNNASLVIAGDFDPSEARRLVEK"
BASE COUNT          718 a         1541 c         1365 g          636 t
ORIGIN      
        1 gatttggagc actggcactt cgacaccttc cgcatcaagt ggcgcgaatc catcgtctat
       61 ccgttcccgc gcggcttcgt caccttcacg ctcgaccagc agggccgcgc ctccgagatg
      121 aagatagacg tgccgaaccc ggatttcgac ttcaccgagc tagagttcaa gcgcgcgccg
      181 gccgcgcagg ccgcgagata agcggcccgc cggcagcccc gcgcgcccgc cgcccgcaac
      241 accactaacc caaactaagg agacgatgaa catgaagaga acctttcggc gcctctgctc
      301 cctcctcgcg ctcaccctcg tgctcgtctc gaccacggcc acgccgcccg cctcggcgga
      361 ggccgtcgtg ctcacagaca accagaccgt gcccatcgag ttcgtagcga cctcctgcac
      421 tggcgagacc gtcgtaatca acggcgagtc gcacgtgctc tttcaggccg tcggcacgcc
      481 cggcggccgc ttcgagaacc acacgcacat acagtttcac ctgcaaggca cgtccgcgag
      541 cggcacgctc tacaccgcca acgagaccgt caacgggcac ttcaccggcg agggcgacgg
      601 gccgcagggc actttcacct ccgtgggcaa cctgacgctc gtctcgcagg gcagcggcga
      661 caacctcctc ttacgaacga ggattcacac cacagtcaac gacaacggcg agatcacggc
      721 cgtggtcttc gagttcgagg tcgtctgtca gggctagccg cgggcgcccc acaaacagac
      781 ttagcgcatc cggcgcctcc gcgtgagctt ttaatttcac gcggaggcgc cggatgcgct
      841 aacaggcgtt gttgttattc agtttcggct cagaacccga aactaccctg agcccctgag
      901 ccgccgccgc cttcagtccc gcccgtttct tcggaggtcg gggagcgttc gccgcgccgc
      961 agcgcgttga cgaggaggtg ggcgcgtcgc gtgggctccg gctgacggta gccgccgtcg
     1021 caccggagcg tgaggtcaat cgcgccttcg aggtctatga ggtggccggg cgagacgaag
     1081 atgggctgca cgcggttctt cgtcctgagc gccgcgccga ctgtctcgcc cttgtcaacg
     1141 agcggcgacc acgagccgcg cccctccgcg ggctcttcgt agcggccgac gaggacagac
     1201 ttcgcgcagc cgaacgtcgg gcggtctatg agcaggccga cgtgcgaggc gatgccgaca
     1261 cggcgcgggt gcgcgagccc ctgcccgtcg aacatgacgg cgtcgggctc ggtcttaagt
     1321 ttagaccagg cttcgagcac cgaaggcgac tcgcggaacg agagcaggcc cggcacgtat
     1381 gggaacctcg tctcgccgac gaggcccacc tcctcgacga cttcgagcga gggcaggcgt
     1441 agcacgacta tcccggtgta gatggtcggg tcgaacttgt tgaagcttat gtcggcgccc
     1501 gccaccgtct cgaccctctt tttgagcggg actatgcgga cgcgctcgcg caggcgcttc
     1561 tgaagcgcga cggcctcgcc cggcgtcaga gaccatccgt gtagctgctc gaatctcgcc
     1621 atggaataat tgcgctcaga gtgcggaagg ctccgccgcc cgtcccgcga ccgcctcgcc
     1681 gaagtcaatg gtttcgctcg cgctcacctc cgcgccctta cggattactg agtgcgcgcg
     1741 gaagcgcgcg tcgtcgcgcc gggggaagtc aacgcggaag tggccgccgc gcgactcctc
     1801 gcgccagagc gccgagcgcg caatgagcgt tgcgaccgtc aggaagttgc gcgggccggg
     1861 ccgcagtggc gcggaggcga tctgcccgaa ctccctgagc gcccgctcca gcgaggggcg
     1921 cgagcgcagg atgccgacgc gctcccacat cagtcggcgc acgcgcttgc gcacggcgag
     1981 cgaggccggc ccgagacggc tcaaatcttc aggcgaagtt tccgacgccg gctccgcgtc
     2041 gcgcgcgctc gcccccgcct tcacgcccgc gaggtcgagc gccgcggcgc ggcccgcgcg
     2101 cgcgccgaag acgagccctt cgaggagcga gttcgacgcc agccggttcg cgccgtggac
     2161 tcccgtgcag gctacctcgc cggccgcgta taggcccggc aggctcgtgc gcccttcgag
     2221 gtctgtgcgg acgccgccca tacagtagtg agcggccggg gagacgggga taggctcgcg
     2281 cgcgaggtcg aggccgtagc gcaggcacgt cgcgtagatt ttcgggaagc ggcggcgcaa
     2341 gctgcgcgcg tcgaaggccg tcatgtcgag gaagaccgtg cgcgtggctg tgcgctccat
     2401 ctcggagact atcgagcgcg ttaccacgtc gcgcggcgca agctcggccg agtcgtggta
     2461 gcgcggcatg aagcgcctgc ccgaggcgtt tcggagcacg ccgccctcgc cgcgcagcgc
     2521 ctcggagagc aggaagcgcg gggcgccttc gaggttcagc gcggtcgggt ggaactgcac
     2581 gaactccatg tcggcgagct cggcccccgc gtcgaaggcc atagccatcc cgtcgcccgt
     2641 cgcaacggcc gggttggtcg tgtgctggaa gagcatgccg gcgccgcccg acgccagcac
     2701 cacgcctcgc gccaggagcg tgcgcgacga acgaacgagc gggtcgaggt atcgcacgcc
     2761 cacgacgcgc ccgccctcga cgactaagct ctccgtctcg gcgtgcgcga ggaaggagac
     2821 gttgcgctcg cggcccgcac gcgcgagcag ggcgcggact atctcgcggc ccgtcgcgtc
     2881 gccgtgcgcg tggagtatgc gcgggcgcga atgtgcggcc tcgcgcgtaa acatcaggcg
     2941 cccgccctcg cggtcgaact ccgcgcccca gccgatcagc tcccctatgt accgcggccc
     3001 ctcgccgacg agcacctcga cggcgcgctc gtcgcacagc cccgcgcccg ccccgatggt
     3061 gtcctcctcg tgcagcgcgg cctcgtccgt atcggagagc gccacggcta tccccccttg
     3121 cgcgtactcc gtgttcgact cctcgcgcct ctccttcgta agcaccgtga cccgcgcgcc
     3181 cgcgccggca agctccagcg ccgcgcgcag gcccgctatc ccgctcccga ccacgacgaa
     3241 atccgtctcc aaagacatgc ccgaacgacc cgcgcctgta aaagtgatgc cccgattcta
     3301 acaccaaacc cgcgcgcgcc acgcccgcgc gggcgaagtt gcgcggcgcg cggcgtcggc
     3361 gtagaattcc cgccagcgga ttcataaaaa gttccccgga caaatctgat attgagggct
     3421 tcggcggcgc cccctcgtgc gcccccccgc agggccgcgg cgcgccgcgc ctcgcaactt
     3481 tgcagacgga gggagacaaa caccatgttt tggagacgcc tgctagcttc ggcgctcgtc
     3541 gtgctgctct cggcgccagc gctcccggcc ttcgcacagc ggaggcgcgg cggctcggcc
     3601 gcccagacgg caaaggccgg ggcccgagtg cttccgccca tcaactacac cgagttcttc
     3661 ctgcccaacg gcctgcgcgt catactccac gaagaccact cgacgccgat tgtggccgtc
     3721 aacgtctggt atcacgtcgg ctcgaagaac gaggtgccgg gccgcacggg cttcgcgcac
     3781 ctcttcgagc acatgatgtt ccagggctcg aagaactaca acaacgacta cttcaagccc
     3841 ttgcaggagg ccggggccgt ccttaacggc tcgaccaacc ccgaccgcac gaactactgg
     3901 gaggtgctgc cctcgaactt cctcgagctc gccatcttca tggaggccga ccgcatgggc
     3961 ggcctgctcg aagccatgac cgaggagaag ctcgccaacc agcgcgacgt ggtgaagaac
     4021 gagaagcggc agaactacga caaccgccca tatgggctgg tcggcgcgaa gataaacgag
     4081 acgctctacc cgcccgacca cccttaccac tggctgacca tcggctcgct cgacgacctt
     4141 acggccgcct cgatggagga cgtgaagggc ttcttccgcc gctactacgt cccgaacaac
     4201 gcgagcctcg tcatcgccgg cgacttcgac ccctcggagg cgcgccgcct cgtagagaag
//
LOCUS       DASPKR010000642         3006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_357890, whole genome shotgun sequence.
ACCESSION   DASPKR010000642 DASPKR010000000
VERSION     DASPKR010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3006)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3006
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357890"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..384
                     /locus_tag="VD968_17205"
     CDS             <1..384
                     /locus_tag="VD968_17205"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16180.1"
                     /translation="VFSLGDNEEAARLMGLNVGRVTVGVYTLSGALAGLAGVMLASRL
                     GAGQPVAAVGWELDAIAAVVVGGTLLTGGQGGVGSTLVGVLLLSLILNIFNLEGWISP
                     WWQLVLRGVILLAVVVIQNRLSAKK"
     gene            434..1228
                     /locus_tag="VD968_17210"
     CDS             434..1228
                     /locus_tag="VD968_17210"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HYE16181.1"
                     /translation="MGRYSEGEIGEFVRRVLDEGFCVLPEHFPRAKMDAWRAAFGPLL
                     VRHIEREGHLRNRGPARYYVTLPFEGLFADPSVFEDDDVLAVVFGLVGKDAVMCQLAT
                     DTPLEGSEYQDVHRDAPPLFPETSEETPPFQLAVNFPLVDVTEENGPFEVARATHMIS
                     KEEGLRRIESGEARLEPLLMRAGDVMIRDVRGLHRGTPNRTREPRPMVVIGYSRRWLN
                     RPEVQVRIPRAVHETLSDRALFLLRLNPVVESLDDAGDEVYQAFAY"
     gene            1250..2155
                     /locus_tag="VD968_17215"
     CDS             1250..2155
                     /locus_tag="VD968_17215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16182.1"
                     /translation="MSTASERTITNGEVEAAVTIGFGPRVTRYAFVGGENVLGECKSD
                     VVATDWGDWRPYGGHRLWTAPEATPRSYEPDDDPVEFDESDAGRTVRLLQPTGRRSLV
                     QKEMVVSLDELGTGFTVTHRVTNHGAWEIELSAWALTIMRGGGEALIPQEPFGPHPEC
                     LLPARALVLWPYTDMTDSRFGFGRRFLRVRCNPALKAPLKIGVTNKRGWAAYRLGDTL
                     FVKRFGFEEGAAYPDLGCNNEVFTAGDFIEVESLSPLRRLAPGASVEHVERWHLFRGF
                     SAGEGGDDELGAALTPLLAGAGVDS"
     gene            2174..>3006
                     /gene="galE"
                     /locus_tag="VD968_17220"
     CDS             2174..>3006
                     /gene="galE"
                     /locus_tag="VD968_17220"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HYE16183.1"
                     /translation="MRVLVTGGAGYIGSVVTEELVADGHTAVVYDSLYKGHRGAVVEG
                     AEFVRGDLADGDLLRRTLREHGIEAVIHMAADSLVSESVQEPAKYYRNNVTAGLALLD
                     SMREAGVSRIVFSSTAAVYGEPEKQPVEEGDALQPTSPYGETKLAFERALRWYDGAYR
                     VRYASLRYFNAAGATRACGEWHDPETHLIPIVLQAASGRRPEVTIYGEDYATRDGTCV
                     RDYIHVVDLARAHILALGILGERSAVYNLGCGGEGYTVREVIAAAREVTGRDIKATFG
                     PR"
BASE COUNT          469 a         1003 c         1053 g          481 t
ORIGIN      
        1 gtcttctcgc tcggcgacaa cgaggaggcg gcgcggctga tgggcttaaa cgtcgggcgc
       61 gtaacggtcg gcgtctatac ccttagcggt gcgctcgccg gtttggcggg cgtgatgttg
      121 gcgtcccgcc tgggcgcagg ccagcctgtc gcagccgtcg ggtgggagct tgacgcaatc
      181 gcggccgtgg tcgtcggggg gacgctcctg acgggcgggc agggcggagt gggctcgacg
      241 ctcgtcggcg tgctgctctt gagcctcatt ctcaatatct tcaacctcga aggctggata
      301 agcccctggt ggcaactcgt ccttcgtggc gtcatactgc tcgcggtcgt cgttattcag
      361 aaccgcctga gcgcgaagaa atgaaagggt ggggtcgggg agtcaaaaca cttccccctt
      421 ctcggctaag gtcatgggga gatacagcga gggtgagata ggcgagttcg tgcggcgtgt
      481 gctcgatgag ggcttctgcg tcctgcccga gcacttcccg cgcgcgaaga tggatgcctg
      541 gcgcgcggcc ttcgggccgc ttcttgtgcg ccacatcgag cgcgaggggc atctgcgcaa
      601 ccgcggcccg gcgcgctact acgtgacgct ccccttcgag ggcctgttcg cagacccttc
      661 cgtctttgaa gacgatgacg tgctcgccgt cgtgttcggg ctcgtgggca aggacgcggt
      721 gatgtgccag ctcgcgaccg acacgccgct cgaaggctcg gagtaccagg acgttcaccg
      781 cgacgccccg ccgctcttcc ccgagacgag cgaggagacg ccgcccttcc agctcgccgt
      841 caacttcccg ctcgttgacg tgaccgagga gaacggcccc ttcgaggtgg cgcgcgcgac
      901 ccacatgatc tcgaaggaag aagggctgcg ccgcatcgag tcgggagagg cccggctcga
      961 gcccctgctc atgcgggcgg gcgacgtgat gatacgcgac gtgcgcgggc tgcaccgcgg
     1021 cacgccgaac cgcacgcgcg agccgcgccc gatggtcgtc atcggctaca gccgccgctg
     1081 gctcaaccgc cccgaggtgc aggtgcgcat accccgcgcc gtccacgaaa cgctctccga
     1141 tcgcgcgctc ttcctcctgc gcctcaaccc cgtcgtggag tcgctagatg acgcgggcga
     1201 tgaggtttat caggcgttcg cctactgacc gggaaagaaa gttcacgcga tgagcacggc
     1261 gagcgagcgc acgataacta acggcgaggt cgaggcggcc gtcaccatag gcttcggccc
     1321 gcgcgtcacg cgctacgcgt ttgtgggcgg cgagaacgtg ctgggcgaat gcaagtcgga
     1381 cgtggtcgcg accgactggg gcgactggcg gccttacggc ggccacaggc tctggactgc
     1441 ccccgaggcc acgccgcgca gctacgagcc tgacgacgac cccgttgagt tcgatgagag
     1501 cgacgccggc cgcaccgtcc gtctcttgca gccgaccgga cggcgctcgc tagtgcagaa
     1561 ggagatggtc gtctcgctcg acgagctggg gacgggcttc accgtcacgc accgcgtgac
     1621 gaaccacggc gcgtgggaga tagagctctc cgcttgggcg ctcacaatca tgcgcggcgg
     1681 cggcgaggcc ctcataccgc aggagccctt cgggccgcac cccgagtgcc tgctcccggc
     1741 gcgcgcgctt gtgctctggc cctacacgga catgacggac tctcgcttcg gcttcggccg
     1801 acgcttcttg cgcgtcaggt gcaacccggc gctcaaggcg ccgctgaaga taggcgtgac
     1861 gaacaagcgg ggctgggcgg cgtaccggct gggtgacacg ctcttcgtca agcgcttcgg
     1921 gttcgaggag ggcgcggcct acccggacct cggctgcaac aacgaagtct tcacggcggg
     1981 cgatttcatc gaggtcgaat cgctgtcgcc gctgcggcgc ctcgcgccgg gcgcgtcggt
     2041 agagcacgtc gagcgctggc acctcttccg gggcttctcc gcgggcgagg gcggcgacga
     2101 cgagttgggc gcggccctca cgcctctact cgcgggcgcc ggagttgatt cgtgaacgaa
     2161 gggggagagt ttcgtgcgag ttctcgtgac gggcggggcg ggctacatcg ggagcgtcgt
     2221 gaccgaggag ttggtcgccg acggccacac cgcggtcgtc tatgacagcc tctacaaggg
     2281 ccaccgcggc gcggtagtcg agggcgccga gttcgttcgc ggcgacttgg cggacggcga
     2341 cctgctgcgg cgaacgctcc gcgagcacgg catcgaggcc gtgatccaca tggcggccga
     2401 ctcgctcgtc agcgagagcg tgcaggagcc tgcaaagtat taccgcaaca acgtcacggc
     2461 cggcctcgcg ctcctcgact ctatgcgtga ggccggcgtc tcgcgcatag tcttctcttc
     2521 gaccgcggcc gtttacggcg agcccgagaa gcagccggtc gaggaagggg acgcgctaca
     2581 gccgacgagc ccctacggcg agaccaagct cgccttcgag cgggcgctgc gctggtacga
     2641 tggcgcctac cgggtgcgct acgcctcgct ccgctacttc aacgccgcgg gcgccacgcg
     2701 cgcgtgcggc gagtggcacg accccgagac gcacctgata cccatcgtcc tccaggccgc
     2761 gtcggggcgc cgccccgaag tgactatcta cggcgaggac tacgcgacgc gcgacgggac
     2821 gtgcgtgcgc gactacatac acgtcgttga cctcgcgcgc gcgcacatac tcgcgctcgg
     2881 catcctgggc gagcgcagcg ccgtctataa cctgggctgc ggcggcgaag gctacaccgt
     2941 ccgcgaagtc atcgccgcgg cccgcgaggt gacgggccgc gacataaagg ccaccttcgg
     3001 cccgcg
//
LOCUS       DASPKR010000643         3637 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1262860, whole genome shotgun sequence.
ACCESSION   DASPKR010000643 DASPKR010000000
VERSION     DASPKR010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3637)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3637
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1262860"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..764)
                     /locus_tag="VD968_17225"
     CDS             complement(<1..764)
                     /locus_tag="VD968_17225"
                     /inference="COORDINATES: protein motif:HMM:NF013755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HRDC domain-containing protein"
                     /protein_id="HYE16184.1"
                     /translation="MSKIEDITRPQWRFVADEAELRERAAPLLGLGLVSVDTETYWDR
                     AAGGGARVSLVQVAAPEGEVLVADVLTTGVEPLRELVESPSVQMVAHNARFDEGVLRG
                     AGLDPRGFLDTLQMARMTLRLRSYSLAAVTEHLFGLPLDKTLRTSNWRRRPLTRAQIE
                     YAAKDARVTLKVFEELSRRLAEEGRLEMALRLSEIRPPSGERKPRKKRGVTTPAIALT
                     PEEKRVVTRLKKWRLERAFQQRVPAYMICPDRTLEHL"
     gene            complement(849..1175)
                     /locus_tag="VD968_17230"
     CDS             complement(849..1175)
                     /locus_tag="VD968_17230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16185.1"
                     /translation="MRRTLALLTLLAVASVWTACSPAENSNNANHGNTNATNTNAGNT
                     NATNMNATGGNTNMTNMNSTTGNTNMGNTNAGAGTNMNGTMGNTNGGNTNRGGNTNTG
                     TTNRNS"
     gene            2104..>3637
                     /locus_tag="VD968_17235"
     CDS             2104..>3637
                     /locus_tag="VD968_17235"
                     /inference="COORDINATES: protein motif:HMM:NF024878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HYE16186.1"
                     /translation="MSGTIRNGLALLAVAALAALAWQLGGLGWAVAVALGAIAVTLWR
                     RHEGRDETLRREAEARLRRAEESATLHLKAVEALAIAIDAKDQTTHGHARRTQVYAVE
                     LGKALGMSGRELEALRAGAMLHDIGKLAVPEHILNKPGRLTPAEFEKMKVHTVVGGDI
                     VGRIGFPYPVEETVLYHHECWDGTGYPKGLKGEQIPLVARVIAVVDFYDTTRCDRPYR
                     AGMSREQSLALLRRKSGSSFDPRVVEAFVENVERMDGLICPEDLAEQAPPRDYAQEAR
                     HEPAGAAPDERKAGFRSIAEAQREVFILQQIAQTIGSSLDLQDTVALVASKLGSIVHF
                     DACLIYVVDESTGKARAIHAVGEGAERFAARPVSVGEGVTGWVIANARSMSSASPEIE
                     TAGVEGGAAARVKAVLSAPLLGEAGAFGAITLHSCGGPYTVEHTRLLESVCIYASSAV
                     NNALMFERTKESALTDTLTGVPNARALRLMLEQRVAECQRSDRDPLAVLCINLDKFGK
                     IND"
BASE COUNT          611 a         1186 c         1166 g          674 t
ORIGIN      
        1 aggtgctcta gcgtcctgtc cgggcagatc atgtaggccg gcacgcgctg ctggaacgcg
       61 cgctcaaggc gccacttctt aaggcgtgtc accacgcgct tctcctccgg cgtcaaggct
      121 atcgcgggtg tcgtaacacc cctcttcttc cgaggcttcc tctcgccgga gggcggccga
      181 atctctgaaa gacggagcgc catctctagc cgcccctctt cggccagccg ccggctcagc
      241 tcttcgaaga ccttgagcgt cacgcgcgcg tccttcgccg cgtactcaat ctgcgcgcgc
      301 gtgagcgggc ggcggcgcca gttagacgtg cggagcgtct tgtcgagcgg gagcccgaac
      361 aggtgctcgg tgacggcggc gaggctgtaa gacctgagcc gcagcgtcat ccgcgccatc
      421 tggagcgtgt caaggaagcc gcgaggatcg aggcccgcgc cgcgcagcac gccctcgtcg
      481 aagcgtgcgt tgtgcgctac catctgcacc gacggcgact cgaccaactc cctgagcggc
      541 tcgacgcccg tcgtgagcac gtcggcgacg agcacctctc cctcgggcgc cgccacctgc
      601 acgagcgaga cgcgcgcgcc tccgccggcc gccctgtccc agtaggtctc cgtgtcaacg
      661 ctcacgagcc ccaggcccag caggggcgcc gcccgctcac gtaactccgc ctcgtcggcc
      721 acgaagcgcc attgcggcct tgtgatgtct tcgattttgc tcaagggtac tcggcggagg
      781 gggccttgaa agttaaaagg cgcgccgtac gagcggcgcg ccttaaaacc gttcgcgtcg
      841 ggccgggact acgagttcct gttcgtcgtg ccggtgttag tgttgccgcc gcggttcgtg
      901 ttgccgccgt tggtgttacc catcgtgccg ttcatgttgg tgccagcgcc ggcgttcgtg
      961 ttgcccatgt tggtattgcc ggtcgtgctg ttcatgttcg tcatgttggt attgccacca
     1021 gtggcgttca tgttcgtcgc gttcgtgttg ccggcgttgg tgttcgtcgc gttcgtgttg
     1081 ccgtggttgg cgttgttcga gttctcagcc ggcgaacagg ccgtccaaac gctggcgacg
     1141 gcgaggagag tcagaagtgc taaggttctt cgcatcgagt gtcctcctgt gcccttaagc
     1201 gggtcagttt gttggggagc tgcgcgtgcc gggcgcgagg cggtacggcc ggggcgctgc
     1261 cgctacagct caacgtttca ggttacaggc ggcacgcccc ccttggggca aaaacaaaag
     1321 ccagggagag ggtacgcctt gaaagagcat gctattaccg acttgggcgc gcgcccagac
     1381 atacgagcgg gcgggctgcc ttaacgggtg cggcggggac ttctcgaaaa cccgccaccg
     1441 caaatagctg cgcgcttgcc tggcgaccgt tgagcgtcca tctcctcatc gaaagttcgg
     1501 acgagggacg ccgggctgct acctccacac gcccaacggg agcgcgctgc tcgaaccacg
     1561 cgaagcccgc gcgaacttcc ccaacggatt gcgccttttc aaccttacgg cgcgcgcact
     1621 ttagcacatg aacagccgga aatacacgat tttttttagc acgtcaaggc cactcaccgc
     1681 ctccggggtg agggttcgtg cgcgagtttt cgtgcttgac tgttcgactt cagccatagg
     1741 ccgaaacgaa cggggagtat agcacaaggt cgggcgcttg gttcaagccg ccgcggccat
     1801 aacttcataa aatactttcg tttaagtgca ccaacgtaca aagcccgccc cgcgcggccc
     1861 cacagcccct gcggaagacc ggacgcggaa ggcgtcaacg agcccgcgct tcatctcagg
     1921 ctcctttcgg gacgccttat cgccattatt cccttgactc taaaggagta gaaccgctat
     1981 tttgattatg ccaacgttgt tggccactgt agcgcccgcc tgcttccgtc ttaccctttg
     2041 agcggcttcg taacttctta cctttcgtgc cgataagaaa gctcggcgcc acctagcccc
     2101 taaatgtctg gaacaatcag gaacggtctc gcgctgctcg ccgtcgcggc gctcgcggct
     2161 ctggcatggc aactaggcgg cctcggctgg gcggtggcgg tcgcgctcgg cgctatcgcc
     2221 gtaacgctct ggcgccgtca cgagggccgc gacgaaacgt tgcgccgtga ggcggaagcg
     2281 cgcctgcgac gtgcagagga gtcggccact ctacacctga aggcggtcga ggctctcgcc
     2341 atcgctattg acgccaagga tcagacgacg cacggccacg cccgccgcac gcaagtgtac
     2401 gcggtcgagt tggggaaggc gctcgggatg agcgggcgtg agttggaggc gttgcgcgcg
     2461 ggcgcgatgt tgcacgacat aggcaagctc gccgtacccg agcatatact taacaagccg
     2521 gggagattga cgcccgcaga gttcgagaag atgaaggttc acaccgtcgt cggcggcgac
     2581 atcgtcgggc gcataggctt cccttacccg gtcgaggaga cagtgctcta ccaccacgag
     2641 tgctgggacg gcacgggcta cccgaagggc ctgaagggcg agcagattcc actggtcgcc
     2701 cgcgtcatcg ccgtcgttga cttctacgac actactcgct gcgaccgccc gtaccgcgcc
     2761 ggcatgagcc gcgagcagtc gctcgcgctg ctgcgtcgca agtccggctc ctcgttcgac
     2821 ccccgcgtcg tcgaggcgtt cgtcgagaac gttgaacgca tggacggcct catctgccct
     2881 gaagacttgg cagagcaagc gccgccgcgc gactatgcgc aggaggccag gcacgagccg
     2941 gccggcgcag ccccggatga gcgcaaggcc ggtttccgct caatcgccga ggcgcagcgc
     3001 gaagtcttca tccttcagca gatcgcgcag accataggct cctcgcttga cctccaggac
     3061 acggtcgctc tcgtggccag caagctcggc tcgattgtcc atttcgacgc gtgcctcatc
     3121 tacgtcgtgg acgagagcac gggtaaggcg cgcgcgattc atgcagtcgg cgagggcgca
     3181 gagcgtttcg ccgcgaggcc cgtgagcgtc ggcgagggcg tcacgggttg ggtcatcgcc
     3241 aacgcgcgct cgatgagcag cgcctcgccc gagattgaga ctgcgggcgt cgaagggggc
     3301 gcggccgcgc gcgtgaaggc cgtgctctcg gcccccctcc taggcgaggc cggagcgttc
     3361 ggtgcgataa cactccactc gtgcggcggc ccttacacgg tcgagcacac gcggctcctg
     3421 gagtccgttt gcatctacgc ttccagcgcc gtcaacaacg cgctcatgtt cgagcggacg
     3481 aaggagagcg cgctgactga cacgcttacg ggcgtgccga acgcgcgggc gctgcgcctt
     3541 atgctcgaac agcgcgtcgc cgagtgccag cgctctgacc gcgaccctct cgctgtcctc
     3601 tgcatcaacc tcgacaagtt cgggaagatt aacgacg
//
LOCUS       DASPKR010000644         2202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1136658, whole genome shotgun sequence.
ACCESSION   DASPKR010000644 DASPKR010000000
VERSION     DASPKR010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1136658"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..360
                     /locus_tag="VD968_17240"
     CDS             <1..360
                     /locus_tag="VD968_17240"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF017864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HYE16187.1"
                     /translation="LAHPEMVEGDGELDTEIMRAARGHVLSKVGAEGIYTAGVPPCER
                     WPRGLGLAFKIEDGDKGDRARPVAAVSLLRRLGALGEAELRRLKGFAGSAVRNRRGEE
                     VGEVRAAAALENLPVHA"
     gene            complement(485..1891)
                     /gene="boxB"
                     /locus_tag="VD968_17245"
     CDS             complement(485..1891)
                     /gene="boxB"
                     /locus_tag="VD968_17245"
                     /EC_number="1.14.13.208"
                     /inference="COORDINATES: protein motif:HMM:TIGR03225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA];
                     GO_process: GO:0010128 - benzoate catabolic process via
                     CoA ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="benzoyl-CoA 2,3-epoxidase subunit BoxB"
                     /protein_id="HYE16188.1"
                     /translation="MELHERIPNNVNLSEDKRLQRALEKWLPNYLEWWREMGPEGFQE
                     KDVWLRTAVSVEPDGWAQFDYVKMPDYRWGIFLKPADPDARVGFGDNYGQPAYQEVPG
                     EFRNALRRIVVTQADTEPASVEQQRQLGKTCPSLYDLRNLFQVNVEEGRHLWAMVYLL
                     HGYFGRDGRDEADALLERRSGNPDKPRILEAFNQPCDDWLNFFCFTMFTDRDGKYQLS
                     ALAESGFEPLARTCQFMLTEEAHHLFVGETGVGRVVKRTAQLMKQSPNEDVRALGGIP
                     FDIIQRYINYWFSYSLDLFGGEISSNAADFFAAGLKGRYQEQKKYEDHVVREGAFTLP
                     VVEGGRLVDREVPMRNALNEVLRGEYVRDCERALERWNKFIADEGVDYRLRLPSTRFH
                     RHVGEYAGHYFDPEGRLVTREEFEAHRDEWLPTVEDREYVRSLMKPVTEPGKIANWIA
                     PPAQGIKGKPFEFEYVRL"
     gene            complement(1939..>2202)
                     /locus_tag="VD968_17250"
     CDS             complement(1939..>2202)
                     /locus_tag="VD968_17250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16189.1"
                     /translation="TFAPDDLDWEDEVRVAIEERTSLSPDALTGMEASLRFAGPETLD
                     TKIYGRLTAWQNWIFQRPNAVGPQGALTNYGKPTQPQFDYKRT"
BASE COUNT          336 a          718 c          753 g          395 t
ORIGIN      
        1 ctcgcgcacc ccgagatggt cgagggcgac ggcgagttgg acacggagat tatgcgcgcg
       61 gcgcggggtc acgtgctctc gaaggtcggg gccgagggga tttacacggc gggcgtgccg
      121 ccgtgcgagc gctggccgcg cgggctgggg ctcgccttca agatcgaaga cggcgacaaa
      181 ggtgaccgcg cacgccccgt cgcggccgtc tcgctcctcc gccgcctggg cgcgctcggc
      241 gaggcggagc tgcgtcgcct gaagggcttc gccggctccg ccgtccgtaa ccgccgcggc
      301 gaggaggtcg gcgaagtccg cgccgccgcg gcgctagaaa acctgcccgt tcatgcctga
      361 agccgacccc cgaaaacccg cctaaaaagc cgcgcccgga aaaagtcgtc gctgctgctc
      421 tggctcggcg gccgcaggct cggccggcag gccgaagagt agggcctctc cgccctctct
      481 taagttacag cctcacgtac tcgaactcga agggcttgcc tttgatgcct tgcgcgggcg
      541 gggctatcca gttggctatc ttgccgggct cggtgacggg cttcatgagg ctgcgcacgt
      601 actcgcggtc ttcgacggtg gggagccact cgtcgcggtg ggcctcgaac tcctcgcgcg
      661 tgacgagccg gccttcgggg tcgaagtagt ggccggcgta ctcgccgacg tggcggtgga
      721 agcgtgtgga gggcaggcgc aggcggtagt caaccccctc gtctgcgatg aacttgttcc
      781 agcgctcaag cgcgcgctcg cagtcgcgca cgtactcgcc gcgcagcacc tcgtttaagg
      841 cgttgcgcat cggcacctcg cggtcaacga gccggccgcc ctcgacgacg ggcagcgtga
      901 aggcgccctc gcggacgacg tgatcctcgt acttcttctg ctcctggtag cggcccttca
      961 ggcccgcggc gaagaagtcg gccgcgttcg agcttatctc gccgccgaag aggtcgagcg
     1021 agtaggagaa ccagtagttg atgtagcgct ggatgatgtc gaaggggatg cccccgagcg
     1081 cgcgcacgtc ctcgttcggg ctctgcttca tcaactgcgc cgtgcgcttg acgacccggc
     1141 cgacgccggt ctcgccgacg aagaggtggt gcgcctcttc ggtgagcatg aactggcagg
     1201 tgcgcgcgag cggctcaaac cccgactcgg cgagcgccga tagctggtac ttgccgtcgc
     1261 ggtcggtgaa catcgtgaag cagaagaagt tgagccagtc gtcgcagggc tggttgaagg
     1321 cttcgagaat cctcggcttg tcggggttcc ccgaacggcg ctctaaaagt gcgtctgcct
     1381 cgtcgcgccc gtcgcgcccg aagtagccgt gcagcagata gaccattgcc cagaggtgcc
     1441 ggccctcctc gacgttgacc tggaagaggt tgcgcaggtc gtatagcgag gggcaggtct
     1501 tacccaactg gcgctgctgc tcgaccgagg cgggctccgt gtcggcctgc gtgacgacga
     1561 tgcggcgcag ggcgttgcgg aactcgcccg gcacttcctg gtaggcgggc tggccgtagt
     1621 tgtctccgaa cccgacgcgc gcgtcagggt ctgcgggctt caggaagatg ccccagcggt
     1681 agtcgggcat cttcacgtag tcgaactgag cccacccgtc gggctcgacc gagacggccg
     1741 tgcgcagcca aacgtccttc tcctggaacc cttccggccc catctcgcgc caccattcga
     1801 ggtagttcgg cagccacttc tcaagcgcgc gctggagccg cttgtcttcg ctcaggttga
     1861 cgttgttggg tatgcgctcg tgcagttcca tgaaagaaag cctctcctcc ttgccgccct
     1921 cttactgata acttccgctc aagtccgctt gtagtcgaac tgcggctgcg tcggcttgcc
     1981 gtagttcgtc aaagcgccct gcgggccgac cgcgttgggg cgctggaaaa tccagttctg
     2041 ccaggccgtg agacggccgt agattttggt gtcgagcgtc tcggggccgg cgaagcgaag
     2101 gcttgcctcc atccccgtaa gcgcgtcggg cgagagcgac gtgcgctcct ctatggcgac
     2161 gcgcacctcg tcctcccagt cgaggtcgtc cggcgcgaag gt
//
LOCUS       DASPKR010000645         4629 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1649671, whole genome shotgun sequence.
ACCESSION   DASPKR010000645 DASPKR010000000
VERSION     DASPKR010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4629)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4629
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1649671"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1197
                     /locus_tag="VD968_17255"
     CDS             <1..1197
                     /locus_tag="VD968_17255"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE16190.1"
                     /translation="LDTTCGIQGRLRKYYFFGAEPRLRVAHGLFGVRSEADLGMRAHF
                     ETQDRRQENGDLPTSRAGTFVEHNERRNQAYSGFAQNRFQLGDWALTPGVRFEHVEYQ
                     RTNRLNGVKGRTDLTKVVPGVGVSYTPSQRLTVFAGAHRGFAPPRTEDVINNTTGGVV
                     ELDPELSWNFELGVRSRPADGVHFEATFFRLDYENQIVPASLAGGIGTTLTNGGATLH
                     QGLELSGRLDSGALRKSPHNFYARAAYTFLPVARFEGARLSSISIPGEAVPSISGNRL
                     PYAPEHLLNATVGYSHPGGFDGLIEAVHVGSQFADDRNFGAVPEFASNGVRVPDSLRF
                     SGQLGVIPSFTVWNATANYTVERTRTTFFVTIKNVFDRLYIADRSRGILPGPPRLVQS
                     GVKFNF"
     gene            1357..1737
                     /locus_tag="VD968_17260"
     CDS             1357..1737
                     /locus_tag="VD968_17260"
                     /inference="COORDINATES: protein motif:HMM:NF013427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HYE16191.1"
                     /translation="MDEKRLEHYRAVLLEQLRQHSELARENQNDALEVAAADDGVKDV
                     ADMSVQDVSQEIEYRLSERESQMVADIDQALLRIDEGSYGVCARCGKEIPERRLDAVP
                     TARYDAECQAVVEASQGEDEHATL"
     gene            complement(1820..2740)
                     /gene="xerC"
                     /locus_tag="VD968_17265"
     CDS             complement(1820..2740)
                     /gene="xerC"
                     /locus_tag="VD968_17265"
                     /inference="COORDINATES: protein motif:HMM:NF001399.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HYE16192.1"
                     /translation="MEQMLAQFLEHLRYERNVSEHTLRNYAIDLGQFLDHLAPADPFT
                     GGRREPDVRQIDHITIREWLSELHAAQKKKTSIARKLAALRTFFQFLIREGVVETNPA
                     KLVSTPRLEKKLPNHLSVEDAVRFIETPDISTDLGKRDRAILEMLYGTGVRVSELVKM
                     DLRDVDYRNRAVRVKGKRRKERVVPFGEPALHALLGWMTVRNSFLQNAPPAERDEEAV
                     FLNYQGTRITTRSVGRMVDKYIKICAGIHDISPHSLRHSFATHLLDSGADLRDIQELL
                     GHARLSTTQIYTHVSMEKLIEVYDRSHPKA"
     gene            complement(2821..4059)
                     /locus_tag="VD968_17270"
     CDS             complement(2821..4059)
                     /locus_tag="VD968_17270"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE16193.1"
                     /translation="MASGNKRRDSGAADGRALTRGRTAEPARGCRSRLAAAWLCGALA
                     LLVAFAPAPYAGGAQSGRKKTPQPPAEQGRGIRPGPSPTPGPIAEPPRTEKKKADDSL
                     TVIRSEGERARPLPASSPTPAAAAESGSGEEVDEDEVVRISSNLVPVPATVIDDRGRA
                     VTDLQLKDFELVVDGETRPIAELTRSETPVRIALLYDNSSSLRAGREFEKQAAVRFLK
                     TVLRPVDRAAIFSVSTVPELSQPLTNDVRALVRTIESFNKPEGATALFDAVAQAADYL
                     RPHEGRKVIVIVSDGTDTISDLDFETTVERAVANDCQIYAVQTGHSESANLRDLRGER
                     NLQFFAEQTGGAVYVPRTGSDLSDAFAQIAADLAQQYVLHYYPADARRDGRFHPFTLR
                     VTSRQNLRVRTRRGYYSPKG"
     gene            complement(4005..>4629)
                     /locus_tag="VD968_17275"
     CDS             complement(4005..>4629)
                     /locus_tag="VD968_17275"
                     /inference="COORDINATES: protein motif:HMM:NF013314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE16194.1"
                     /translation="MKPVGLTDPRTGREPYAAVQLRQENLMADAYNLVGFQNHLRYGE
                     QARVLRLIPGLERAEFLQFGQIHRNTYINAPRVLAPTLQMRERPRVFFAGQISGVEGY
                     VESVATGWLAGVNAARIVRGQAPLEAPRKAATGALARYVSGADSKNYQPVNITFALLE
                     PLPEEERRRFRRKRERHARQVELALGEWDDWLREIKGETRAPLTAAP"
BASE COUNT          744 a         1496 c         1602 g          787 t
ORIGIN      
        1 ctcgacacga cctgcggcat acaggggcgc ctgcgcaagt actacttctt cggcgccgag
       61 ccgcgactgc gcgtcgcgca cgggctcttc ggcgtccgct ccgaggccga cctgggcatg
      121 cgcgcgcact tcgagacgca ggacaggcgg caggagaacg gcgacctgcc cacttcgcgc
      181 gcgggcacgt tcgttgagca caacgagcgg cgcaaccagg cttactccgg cttcgcgcag
      241 aaccgcttcc agctcggcga ctgggccctg acgccgggcg tgcgcttcga gcatgtcgag
      301 taccaacgca cgaaccgttt gaacggggtg aagggacgga cggatttgac gaaggtcgtg
      361 cccggcgtcg gcgtctccta cacgccttcg cagcggctga cagttttcgc gggcgcccat
      421 cgaggtttcg cgccgccgcg gactgaggac gtaattaaca acacgacggg cggcgtggtc
      481 gagctcgacc cggagcttag ctggaacttc gagcttggcg ttcgcagccg gccggccgac
      541 ggcgtgcact tcgaggcgac cttcttccgc ctcgactacg agaaccagat cgtcccggcg
      601 agcctcgcgg gcggcatcgg gacgacgctg acgaacggcg gcgcgacgct ccaccagggc
      661 ctcgagctct cgggccgctt agactcaggc gcgctgcgca agtcgcccca caacttctac
      721 gcgcgcgccg cctacacttt ccttcccgta gcgcgcttcg agggggcccg gctgagcagc
      781 ataagcatcc ccggcgaggc cgtgccgagc atcagcggca accgcctgcc ctacgcgccg
      841 gagcaccttc tgaacgcgac cgtgggctac tcgcaccccg gcggcttcga cggcctcata
      901 gaggccgtgc acgtcggctc gcagttcgcg gacgaccgca acttcggcgc ggtgccggag
      961 ttcgcctcga acggcgtgcg cgtccccgac tccctgcgct tcagcggcca gttgggggtc
     1021 ataccctcct tcaccgtctg gaacgcgacg gccaactaca cggttgagcg cacgcgcacg
     1081 accttcttcg tcaccatcaa gaacgtcttc gaccgtctct acatagccga ccgctcgcgc
     1141 ggcattctgc ccggcccgcc gcgtctcgtg cagagcggcg tgaagttcaa cttctgacgg
     1201 ccgcgcaaaa agagtggcag gctgggtgac gggaggccgg cctcccgtca tgctttttgc
     1261 gtgccggcgg cgcatgccaa acggccgcgg ttgggttata atccgcgcac tttttgaccc
     1321 gagccgataa aaacatttcc ggggggctta aaacggatgg acgagaagag gcttgagcac
     1381 tatcgcgcgg tgctgctcga acagctcagg cagcactcgg agctggcgcg cgagaaccag
     1441 aacgacgcgc ttgaggtcgc ggccgcggac gacggcgtca aggacgtggc cgacatgtcc
     1501 gtgcaggacg tgagccagga gatagagtac cgtctgagcg agcgcgagtc gcagatggtc
     1561 gcggacatag accaggcgct gctgcgcatt gacgaaggca gctacggcgt ctgcgcgcgc
     1621 tgcggcaagg agatacccga gcgccgcctc gacgcagtcc ccaccgcccg ctacgacgcg
     1681 gagtgccaag ccgtagtgga ggccagccag ggcgaagacg aacacgcaac gctctgaagc
     1741 ggtgacgagt gaagagtggc gggcagcggg caagacagct tcttgcccgc tgcccgccac
     1801 ttgtcattcc tgaccacttc taagccttcg ggtgcgacct gtcgtaaacc tctatgagct
     1861 tctccatcga gacgtgcgtg tagatttgcg tggtggagag gcgcgcgtgg ccgagcagct
     1921 cctgtatgtc gcgcaggtcg gcgccgctgt cgagcaggtg cgtggcgaag gagtggcgca
     1981 gcgagtgcgg gcttatgtcg tgtatgccgg cgcagatttt gatgtacttg tccaccatgc
     2041 ggccgaccga gcgcgtcgtg attcgtgtac cctggtagtt gaggaagacg gcctcctcgt
     2101 cgcgctcggc cgggggcgcg ttctgcagga aagagttcct cacggtcatc cagcccagga
     2161 gggcgtggag cgccggctcg ccgaacggca ctacgcgctc cttccggcgc ttccccttga
     2221 ccctcacggc cctgttcctg tagtcaacgt cgcgcaagtc catcttcacc aactcggaca
     2281 cgcgcacgcc cgtcccgtag agcatctcta aaatcgcgcg gtcgcgcttt cccaggtcgg
     2341 tcgagatgtc cggcgtctct atgaagcgca cggcgtcctc gaccgagagg tggttaggga
     2401 gcttcttctc caggcgcggg gtggagacga gcttggccgg gttcgtctcg acgacgccct
     2461 cgcgtatgag gaactggaag aaggttctga gcgccgcgag cttgcgcgca atcgaggtct
     2521 tcttcttctg cgcggcgtga agctccgata gccactcgcg gatggttatg tggtcaatct
     2581 gccgcacgtc cggctcgcgc cgcccgccgg tgaaggggtc tgccggcgcg aggtggtcga
     2641 ggaactggcc gaggtcaatg gcgtagttcc tgagcgtgtg ctcgctcacg ttgcgctcgt
     2701 agcgcaggtg ctcgaggaac tgtgcaagca tttgctccat aaaacagaag gaagcggaag
     2761 ctccggcgaa cggcccaaga atagaacaaa agccgccttc tgcctactgc tttctgcctt
     2821 ctagcccttc ggcgagtagt agccgcggcg cgtgcggacg cggaggttct ggcgggaggt
     2881 gacgcgcagc gtgaaggggt ggaagcggcc gtcgcggcgg gcgtccgccg ggtagtagtg
     2941 caggacgtac tgctgcgcga ggtcggctgc tatctgcgcg aaggcgtcgg agaggtctga
     3001 gccggtgcgc gggacataga cggcgccgcc cgtctgctcg gcgaagaatt gcaggttgcg
     3061 ctcgccgcgc aggtcgcgca ggttggcgct ctcgctgtgg ccggtctgga cggcgtaaat
     3121 ctggcagtcg ttggcgacgg cgcgctcgac cgtggtctcg aagtcgaggt cgctgatggt
     3181 gtcggtgccg tccgagacta tgacgatgac cttgcgtccc tcgtgagggc ggaggtagtc
     3241 ggcggcctgc gcgacggcgt cgaagagggc ggttgcgccc tcgggcttgt tgaaagactc
     3301 gatagtgcgg actagcgcgc gcacgtcgtt cgtgagcggc tgcgaaagct ccggcacggt
     3361 cgagacggag aagatggcgg cgcggtcaac cggcctcaga accgtcttga ggaagcggac
     3421 ggccgcctgc ttctcgaact cgcggccggc gcgcagcgac gaactgttgt cgtagagcag
     3481 cgcgatgcgc acgggcgtct cggagcgcgt caattcggcg atgggccgcg tctcgccgtc
     3541 aacgaccagc tcgaagtcct tgagctgtag gtctgtgacg gcgcggccgc ggtcgtctat
     3601 gacggtcgcg gggacgggga cgaggttcga gctgatgcgc acgacctcgt cctcgtcaac
     3661 ctcctcgccg gagcccgatt cggcagcggc ggcgggcgtg ggcgacgagg ccggcagcgg
     3721 gcgcgcacgc tcgccctcag agcgtatgac tgtgagcgag tcgtcggcct tcttcttctc
     3781 ggtgcggggc ggctcggcga tggggccggg cgttggcgaa gggccgggcc ttatgccccg
     3841 gccctgctcg gcgggcggct gcggcgtttt cttacggccc gactgcgccc cgcccgcgta
     3901 aggggcgggc gcgaaggcaa cgagcagcgc cagcgcgccg cagagccacg cggccgcgag
     3961 ccgcgagcgg cacccgcgcg caggctcggc cgtgcggccc cgcgttaggg cgcggccgtc
     4021 agcggcgccc gagtctcgcc ttttatttcc cgaagccaat cgtcccattc cccgagcgcg
     4081 agctcgacct gccgcgcatg gcgctcgcgc ttgcgccgga agcgcctccg ctcctcttcc
     4141 ggcagaggct ccaacagtgc gaacgttatg ttgaccggct gatagttctt agagtctgcg
     4201 cccgacacgt agcgggcgag cgcgcccgtc gcggccttcc ggggcgcttc gagcggcgcc
     4261 tgaccgcgca cgatgcgggc ggcgttcacc cctgcgagcc agcccgtcgc cacggactcg
     4321 acgtagccct cgaccccgct tatctgcccc gcgaagaata cgcgcgggcg ctcgcgcatc
     4381 tgaagagtcg gcgcgagcac gcgcggggcg ttgatgtaag tgttccggtg aatctgcccg
     4441 aactgcaaga actcggcccg ctccaagccc ggtatcagcc gcagaaccct agcctgttcg
     4501 ccgtaacgta gatgattctg gaagccgacg aggttgtagg cgtcggccat caaattctct
     4561 tgtcttaact gtacggcggc gtaaggctcg cggcccgtgc gcgggtctgt gaggccgacc
     4621 ggcttcatg
//
LOCUS       DASPKR010000646         2556 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_620674, whole genome shotgun sequence.
ACCESSION   DASPKR010000646 DASPKR010000000
VERSION     DASPKR010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2556)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2556
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_620674"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..314
                     /locus_tag="VD968_17280"
     CDS             <1..314
                     /locus_tag="VD968_17280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16195.1"
                     /translation="SEGQSQRGECQQRCTQQYQDCRRAANANQDTCRRAFEACREACK
                     GNTNTNGNTGGNTNTNTNSNTNTGGNTNTNTGGNTNTGGNTNTNTNTNTNTNATPPRA
                     R"
     gene            532..1020
                     /locus_tag="VD968_17285"
     CDS             532..1020
                     /locus_tag="VD968_17285"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE16196.1"
                     /translation="MPDEKDARPVVLLVDDFDDSRESIAIQLRAEGFDVIEAPDGLAA
                     IEAARRKRPSLVLMDLSLPGLDGLSATCRLRELEGMREVPVVALTAHSPETHRDAALA
                     VGCDEFLTKPVEPKSLTPLLRRLLAEGRAPARPQIDSASLADDQLAEAIERFMPGRGD
                     SH"
     gene            complement(1026..2129)
                     /locus_tag="VD968_17290"
     CDS             complement(1026..2129)
                     /locus_tag="VD968_17290"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYE16197.1"
                     /translation="MISARRMVSREVILLGPLPPPHGGVSVYFSFLAEHLKGEGVKVW
                     AYFGGRECAEPHVRCFRHRRLGVVPLALRARRGARVLDVTHFHLEHPNPLLLPLWLAL
                     KPIVRARWYKNILDGSLPARHREFSALRRLLFRAAVAGVDEFVVVSEELRRWLVEEVK
                     VTQRVTVIPCLVPIPESRLGEGLPPETERALAPYGRRPRRVCSVGVFIPAYGFRDTAE
                     AVERVRAETGEDVGLALLDGAFARDEEYRAEVLGGREWITVIENVPNADVYQIMRRSH
                     CFVRGVEREGYGISRVEATWCGLPVVATNVGETRGMLVYEFGDVEALAARLKRALFET
                     PPAEVEAWAARFHAEAEANLRALREVLGLDLTD"
     gene            2182..>2556
                     /locus_tag="VD968_17295"
     CDS             2182..>2556
                     /locus_tag="VD968_17295"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HYE16198.1"
                     /translation="MASTPESSEVTVVVPSYNHARFVGAALRSVFAQAPAPARLVVFD
                     DGSTDDSPRVIERELKACPFPCELIATRNRGLCATLNDGLSRASGRYFAYLGSDDLWL
                     PGFLAARVRALGARPGAVLAYGH"
BASE COUNT          462 a          922 c          817 g          355 t
ORIGIN      
        1 cgtccgaggg gcagagccag cgcggcgagt gccagcagcg ctgcacgcag cagtatcagg
       61 actgccgccg cgccgccaac gccaatcagg acacctgccg gcgcgccttc gaagcctgcc
      121 gcgaggcctg taagggcaac accaacacca acggcaacac aggcggcaac accaacacga
      181 acaccaacag caatacgaac acgggcggta acaccaacac caacacgggc ggcaacacca
      241 acacgggcgg caacaccaac acgaacacca acacgaacac gaacaccaac gcgacaccac
      301 cgcgcgcgcg gtaaagccag ccctcccaaa ttgggacagg ctagttaagt agcgcgcttc
      361 gaagggccga cggccgggag actatctctc ccggccgtcg gccccttagc tttggctgtc
      421 tcgaaggtta ttaaggttat tgtggacggg gtatgtacgt tggggtacac ttcggcatcc
      481 cccctgagcc gttcgcgcgt cgcgcgccct cacctgagag gagcagtaaa gatgcccgac
      541 gaaaaagatg cacgccccgt cgtgttgctc gttgacgact tcgacgactc gcgtgagagc
      601 atcgccatac agctaagggc cgaaggcttc gacgtgatag aggcgccgga cggcctcgcc
      661 gccatcgagg ccgccaggcg aaagcgcccc agcctcgtcc tcatggactt gagcctgccc
      721 ggcctagacg ggctctcggc cacgtgccgg ctgcgcgagc tggaaggcat gcgcgaagtc
      781 cccgtcgtgg cgctgacggc gcacagcccc gagacgcacc gcgacgccgc gctcgccgtc
      841 ggctgcgacg agtttctgac caagcccgtc gagccaaagt cgctcacgcc gctcttgaga
      901 cgactgctgg ccgaaggccg cgcgccggcg aggccgcaga tagactcggc gtcgctcgcc
      961 gacgaccagc tcgccgaagc aatcgagcgg ttcatgcccg gccgtggcga cagccactaa
     1021 aaattctagt cagttaagtc aagccccagg acttcgcgca gcgcgcggag gttagcttcc
     1081 gcctcggcgt ggaagcgcgc ggcccacgcc tcgacctccg cgggcggcgt ctcgaagagc
     1141 gcgcgcttaa ggcgcgcggc gagcgcttca acgtcgccga actcatagac gagcatgccg
     1201 cgcgtctcgc cgacgttcgt cgcgacgacg ggcaggccgc accacgtcgc ctcgacacga
     1261 gagatgccgt agccctcgcg ctcgacgccg cgcacgaagc agtggctgcg ccgcatgatc
     1321 tgatatacgt ccgcgttcgg cacgttctcg atcacggtta tccattcgcg cccgcccagg
     1381 acttccgccc ggtactcttc gtcgcgcgcg aacgcgccgt ccagaagcgc gagccccacg
     1441 tcctcgcccg tctcggcgcg cacgcgctcg accgcctcgg ccgtgtccct gaagccgtat
     1501 gccggtatga agacgcccac ggagcagacg cggcgcggcc tccgcccgta aggcgcgagc
     1561 gcccgctcgg tctcgggcgg gagaccctcg cccagccgcg actccggtat aggcacgagg
     1621 caagggatga ccgtcaccct ctgcgtgacc ttcacctcct cgacgagcca gcgccgcagc
     1681 tcttcgctca cgaccacgaa ctcgtccacg ccggcgacgg cggcgcggaa gagcaggcgg
     1741 cggagcgctg agaactcgcg gtggcgtgcg ggaagtgacc cgtcgaggat atttttgtac
     1801 catcgtgcgc gcacgatggg cttgagcgcg agccagaggg gcagaagcag cgggttcggg
     1861 tgctcgaggt ggaagtgagt cacgtcgagc acgcgcgcgc cgcgacgggc gcggagcgcg
     1921 agcgggacga ccccgagccg cctgtgccgg aagcagcgga cgtgcggctc cgcgcactcg
     1981 cgcccgccga agtaggccca gactttcacg ccctcgccct tcaggtgctc ggcgaggaag
     2041 ctgaaataga cggacacccc gccgtgcggc ggcggcagcg gcccgagcag tatgacttcg
     2101 cggcttacca tgcggcgggc tgaaatcata acctttaacg gcaggcagtc aaccgactgc
     2161 taatcgccgg gcgcttcaca tttggcctcc acgcccgaga gcagcgaagt cacggtcgta
     2221 gtgccgtcct acaaccacgc gaggttcgtg ggggcggcgc tgcgctccgt cttcgcgcag
     2281 gcgcccgcgc ccgcccgcct cgtcgtcttc gacgacggct cgaccgacga ttcgccccgc
     2341 gtcatagagc gcgagctaaa agcctgcccg ttcccctgcg agcttatcgc gacgcgcaac
     2401 cgcggcctgt gcgcaacgct taacgacggg ctctcgcgcg cctcggggcg ctacttcgct
     2461 tacctcggct ccgacgacct ctggctgccc ggcttcctcg cggcgcgcgt gcgcgcgctc
     2521 ggtgcgcgcc ccggcgccgt gctcgcctac ggccac
//
LOCUS       DASPKR010000647         2591 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_885610, whole genome shotgun sequence.
ACCESSION   DASPKR010000647 DASPKR010000000
VERSION     DASPKR010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2591)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2591
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_885610"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            71..400
                     /locus_tag="VD968_17300"
     CDS             71..400
                     /locus_tag="VD968_17300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16199.1"
                     /translation="MQVKIKNASDVQWHARGGELNTNPDNRFYLAAGNRWLKGDGGEM
                     VTNMDGRYGLPQDLKPGEEVEVPLQVTAPKEPGEYTLEVDLIQEQVAWFADKGSPVAR
                     VKVTIVK"
     gene            513..>2591
                     /locus_tag="VD968_17305"
     CDS             513..>2591
                     /locus_tag="VD968_17305"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYE16200.1"
                     /translation="MRLAYFSPLGPQRSGISDYSEELLPALAERGAGVTLFVDGFEPS
                     SRELLARFPVVDYRGDPAALRRLGDFDAVVYHIGNDHRYHDGILEALRARPGVVVLHD
                     FALQDFFLGLARERGDTRVYLEEVAACHGEPARREAAEALARGGAPAILASPVEFPLN
                     CRVARAAEGLIVHSEWSRSRLERIAPGVPVARIDMAVKPPAPKRYDETGGGREVEIAN
                     FGLITPGKGIEHALRALSALKATHAFRYTLVGEPNPFFDVRGLIRRYGMEDRVRVTGH
                     VPLSDFERRITETDIALNMRERTVGETSASLCRIMAAGVPAVVSNVGWYSEIPDDCVV
                     KVDLDEDTDALLFAYLERLIEDSGLRRRLGENARRHALAAHSVGRAADAYLAFIAGVI
                     DNRARRSFTASVARELSLLGLRPEDETLLRGVAAEVATLAPALRPEGRAATNGNGACA
                     PPAAVNVIDESTAVPNPSPRPSGRLPKIEGVDYKRAAVEYLGRLPEERRHHLRTKPFY
                     NLANKPARYKGDGLDEDARRHFCDFANMAVVLALPPGSRILDVGCGSGWLSEYFARLG
                     YDVTGIDISPDLVEMSRERVARVPYGADHETPLRCRFEVHDVEAAPPAGSFDAVVCYD
                     SLHHFEDERAVVRNLAASLRYGGLLFILEGERPPAGSASEEELRAVMREFRTLESPFD
                     YEYLRELLDEN"
BASE COUNT          421 a          921 c          844 g          405 t
ORIGIN      
        1 tcgaggccgc cctcgccgcg cccgcgaaca cgccgacgac caacacgcaa accaacaatc
       61 attaaagacc gtgcaggtaa agataaagaa cgcgagcgac gtgcagtggc acgcgcgcgg
      121 cggcgagttg aacacgaacc ccgacaaccg cttctacctc gcggccggca accgctggct
      181 caagggcgac ggaggcgaga tggtgacgaa catggacggg cgctacggcc tgccgcagga
      241 cttgaagccg ggcgaggagg tcgaggtgcc tcttcaggtc acggcgccga aggagcccgg
      301 cgagtacacg ctcgaagttg acctcataca ggagcaggtc gcatggttcg ccgacaaagg
      361 ctcccccgtc gcgcgtgtca aggtaacaat agttaagtaa gtaggcagaa ggcagtagaa
      421 caccttctga cgttaggcgg tctgaatatc gtccgagctt ccgccggccg ggccttactg
      481 ccttctgctt tctgccttcc gccttctgtt ttatgaggct tgcctacttc agcccgctcg
      541 ggccgcagcg gtcgggcata tccgactaca gcgaggagct tctgccggcg ctcgccgagc
      601 gcggggccgg cgtgacgctc ttcgtggacg gcttcgagcc ttcgagccgc gagctgctcg
      661 cgcgcttccc ggtcgttgac taccggggcg acccggccgc gctccgccgc ctcggcgact
      721 tcgacgctgt cgtctatcat atcgggaacg accaccgata ccacgacggc attctcgaag
      781 cgttgagggc gaggcccggc gtcgtcgtcc tgcacgactt cgcgcttcag gacttcttcc
      841 tcgggctcgc gcgcgagcgc ggcgacacgc gcgtctattt agaagaggtc gcagcgtgcc
      901 acggcgagcc ggcgcggcgg gaggcggccg aagcgctcgc gcgcggcggc gcgcccgcga
      961 tactcgcgag ccccgtcgag ttccccctga actgccgcgt ggcgcgggcg gcagaaggct
     1021 taatcgtcca ttcggagtgg agccgctcgc ggctggaaag aatcgcgccc ggcgtccccg
     1081 tcgcgcggat tgacatggcc gtgaagcctc ccgccccgaa gcgctacgac gagacgggcg
     1141 gcggccgcga ggtcgagata gctaacttcg ggctgattac gcccggcaag ggcatcgagc
     1201 acgccctgcg cgctctctcc gcgctcaagg cgacgcacgc cttccgctac acgctcgtgg
     1261 gcgagccgaa ccccttcttc gacgtgcgcg gcctcattcg ccgctacggg atggaagacc
     1321 gcgtgcgcgt caccggccac gtcccgcttt ccgatttcga gcggcgcatt acggagaccg
     1381 acatcgcgct caacatgcgc gagcgcacgg tgggcgagac ctccgcgagc ctgtgccgca
     1441 tcatggcggc gggcgtgcca gccgtcgtct cgaacgtcgg ctggtactcg gagattcccg
     1501 acgactgcgt cgtcaaggtt gacctggacg aggacacgga cgcgctcctc tttgcctacc
     1561 tcgaaaggct catcgaggac tcggggctgc ggcggcgtct gggggagaac gcgcggcggc
     1621 acgcgctcgc ggcgcactca gtcgggcgcg cggccgacgc ctacctcgcc ttcatcgcgg
     1681 gagtgataga caaccgcgcc cggcgctcct tcacggcttc ggtcgcgcgc gaactgtctc
     1741 tgctcggcct gcgccccgag gacgagacgc tcctgcgcgg cgtcgctgcc gaggtagcaa
     1801 cgctcgcgcc cgccctccgc cctgaaggcc gcgccgcgac gaacggcaac ggcgcgtgcg
     1861 cgccgccggc cgccgtcaac gtcattgacg aaagcaccgc cgtccctaat ccttcaccgc
     1921 ggccgtcggg ccggctcccc aagatcgagg gcgttgacta caagcgcgcg gcggtcgagt
     1981 acctcggccg cctcccggaa gagcgccgtc accacctccg caccaagccg ttctacaacc
     2041 tcgccaacaa gcctgcgagg tacaagggcg acgggctcga cgaggacgcg cgccgccact
     2101 tctgcgattt cgccaacatg gccgtcgtgc tcgcgctccc gcccggcagc cgcatactcg
     2161 acgtgggctg cggctccggc tggctctccg aatacttcgc gcgcctcggc tacgacgtga
     2221 ccggcataga cataagccca gacctcgtag agatgtcgcg cgagcgcgtc gcgcgcgtcc
     2281 cctacggcgc cgaccacgag acgccgctcc gctgccgctt cgaggttcac gacgttgagg
     2341 ccgcccctcc cgcgggcagc ttcgacgccg tcgtctgcta cgactcgctc caccacttcg
     2401 aggacgagcg cgccgtcgtg cgcaacttgg cggcttctct caggtacggc ggcctgcttt
     2461 tcatactcga aggcgagcgc ccgcccgcgg gctccgcgag cgaggaggag ttgcgcgccg
     2521 ttatgcgcga gttccgcacg ctcgagtcgc ccttcgatta cgagtacctg cgcgagcttc
     2581 tggacgagaa c
//
LOCUS       DASPKR010000648         4136 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_493238, whole genome shotgun sequence.
ACCESSION   DASPKR010000648 DASPKR010000000
VERSION     DASPKR010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4136)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4136
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493238"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            477..1239
                     /locus_tag="VD968_17310"
                     /pseudo
     CDS             477..1239
                     /locus_tag="VD968_17310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611515.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
     gene            complement(1457..2059)
                     /locus_tag="VD968_17315"
     CDS             complement(1457..2059)
                     /locus_tag="VD968_17315"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HYE16201.1"
                     /translation="MSSARKTHRQAVPQARQTRQPSKRFWTRTRIAVAVTALAVTTAL
                     GLATFSRPETRRAPNPILDTDLQLLDGGTFRLAEYDGRVVVLNFWATWCGPCRSEIPH
                     LVEMNGEYKGRGVEFIGLSTEEPLTAREKVRNFAAQYRMDYRLGFSERQWAARLMQDK
                     TNIPQLFVLRDGRVLNRFIGFNDARPQQLRDAIEQALKTN"
     gene            complement(2143..2769)
                     /locus_tag="VD968_17320"
     CDS             complement(2143..2769)
                     /locus_tag="VD968_17320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16202.1"
                     /translation="MARNVNTKFAAHAALPFALLLVLAFAQGGSCGKGAAGANAAKGS
                     NPAAKSSNSAADAATPAGALTSNAAAAAGANGNAVGAGRGEAAVHEMSETTGGGDVAA
                     GTWGGQHVRLEVRDDGAEIEFDCAHGRIDGRLRPGADGRFDATGTFVAERGGPVREGA
                     SDKGEPARYTGRVRGKTMTLSVRLTDSNDDAGTFTLTHGREPELVKCR"
     gene            3055..3855
                     /locus_tag="VD968_17325"
     CDS             3055..3855
                     /locus_tag="VD968_17325"
                     /inference="COORDINATES: protein motif:HMM:NF017945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate hydroxylase PuuD"
                     /protein_id="HYE16203.1"
                     /translation="MLTDFNDLPSALAMLQGLVHGADPGSIMKVIVRWLHFVAGIAWI
                     GLLYFFNLVNVNFMKGLDAPTKKVVVPALMPKALWYFRWGALVTVLAGLMYYVMYIVP
                     EEGGPGAANLTSGQRLGVIGVWLLVVLVTYAILFFFYRVPALTKDGRVLAVAVAVLMV
                     VMAAAVLYVLGTKSGNCDTLGNCKYLGNKTLSIGVGGGMGILMLLNVWGVIWPAQKRI
                     IAGTISGEAAPPALARAAFLASRTNAWLSLPMLFLMAQSHDYAFFAGK"
BASE COUNT          684 a         1317 c         1332 g          803 t
ORIGIN      
        1 cgtcgaacct gcgcgagatt ctcacctcac cgtcgggctg tgtgaagacc tcgtaatcac
       61 gtttcggcct catggcctcg accagccgtg tcggggggta gtagaagctc agcttttgct
      121 tcttgttgta catgtcatgg gcgaccccga tggttttaaa tgcgcaagtc atcgaagggt
      181 gctggggatt cgtcccgggg cggcgggtcc gggcgtagcc gctcccgccg gcgacgccga
      241 gggcacaaga cataacgacg gacacgcaaa atagtctttt catcacactc cagagatagc
      301 gattttcggg gtccaccttt aatttgcctt ttccaactct agaaacggta gtaagcagaa
      361 ttaaggggga gataagcgcg taaatcgctt tcatccgtat atctcctaaa aaagattagg
      421 ccatcaccta tgtttaataa ctaggttctg ttgacgtatc aggttaagct ctttgaatgt
      481 tgccggttac tctgtctgat gctcagtggc agaagattct gcccttctta ctcgctcacc
      541 cgaagctcta tgtcgggccg cagtggagtt gccgccgctt cctctccgcc gtgctctggg
      601 tttcccgctc cggcgcgcag tggcgactgc tgcctaagga gtacggcaac tggaacagcg
      661 gctataagcg cttcgcccgc tggtgcgagc aaggcgtctg ggaagaactg caccagttct
      721 gcgccgacga ccccgacctg gagcacctga ttatcgactc gaccatcatc cgcgcccacc
      781 cgtgcgcggc gggcgcgcta aaaaaaacac ggcggtcagg aggcccaggc gttaggtcgc
      841 agccgcggcg gcttctcgac gaagatacac ttggcggttg atgccttggg taacccgctg
      901 cacttcatcc tgaccggcgg cgagtgccat gagagtccgc aagccggcgc gctcatcgaa
      961 ggctacgcga tgcaggtgct catcggcgac aagggctacg actcggcgga cttcatcaaa
     1021 ggactggtcg ccgctggcat cgaggcggtc atcccgccgc gagttaaccg aacggagcag
     1081 cgcgaatatg acgagcacct gtaccgggag cggcatctcg tcgaatgctt catcaacaag
     1141 gtcaagcact atcggagagt gttctcgcgc ttcgagaagc tgtcaaagaa ctacctcggc
     1201 ttcctgagct tcgtcagcgc gctcgtgtgg ctacgctgaa atgtcaacag aacctagtat
     1261 tctaccgcgg aactgacgca caagtacgaa ttcggtggtt ttatgcttaa ccactcccgc
     1321 gcgggatggc agcttatctc aggtgccgcg tctttggggc aggcgcgctt cgtggcgcgg
     1381 ctcagggact gtggccgcgg cgcggagaga ccatgcgatg gttggagggt gggcggttcg
     1441 ccgggttccg gtgtcgtcag tttgtcttga gggcctgctc gatggcgtcg cgcaactgct
     1501 gggggcgggc gtcgttgaag ccgatgaagc ggttgaggac gcggccgtcg cgcaggacga
     1561 agagttgggg gatgttcgtc ttgtcctgca tgaggcgggc ggcccactgg cgctcggaga
     1621 agccgaggcg gtagtccatc ctgtactggg cggcgaagtt gcgcaccttc tcgcgcgccg
     1681 tcagcggctc ctcggtcgag aggccgatga actcgacgcc gcggcccttg tactccccgt
     1741 tcatctctac gaggtgcggt atctccgagc ggcacggccc gcaccacgtc gcccagaagt
     1801 tgagcacgac cacgcggccg tcgtactcgg cgaggcggaa cgtgccacca tctaagagtt
     1861 gaaggtcggt gtcgaggatg gggttgggcg cacgccgcgt ctcggggcgg ctgaaggtcg
     1921 ccaggccgag ggcggtcgtc acggccagcg ccgtgacggc gacagcgatg cgcgtccgcg
     1981 tccagaaacg tttcgaaggt tgacgcgtct gccgcgcctg ggggactgcc tgacggtgcg
     2041 tttttctggc ggatgacatt actcgaagag tccctttaat ctgaaagtat acgtctaaaa
     2101 gtggagttca gggtcgcggc gtctgtgtgc gaccttcggg cctcagcggc acttgaccaa
     2161 ctccggctcg cgcccgtggg tcagggtgaa ggtgccggcg tcgtcgttcg agtcggtgag
     2221 gcggacgctg agggtcatgg tcttgcctct gacccggccg gtgtagcgcg ccggctcgcc
     2281 tttgtcgctc gcgccctcgc ggacggggcc gccgcgttcc gcgacgaagg tgcctgtggc
     2341 gtcgaagcgg ccgtcggcgc cgggccgcag acgaccgtcg atccgcccgt gcgcgcagtc
     2401 gaactcgatc tcggccccgt cgtcgcgcac ttcgaggcgg acgtgttggc cgccccaggt
     2461 gcccgcggcc acgtcgccgc cgcccgtcgt ctcactcatc tcgtgcacgg ccgcctcacc
     2521 cctcccggcg ccgacggcgt tgccgttcgc cccggcggct gctgctgcgt tcgatgtcag
     2581 cgcgccggcg ggagtcgccg cgtcggcggc tgagtttgac gacttcgccg ccgggttcga
     2641 ccccttcgcg gcgttcgccc cggccgcgcc cttgccacag gagccgccct gcgcgaacgc
     2701 caacacgagg aggagcgcga agggaagcgc ggcgtgcgcg gcgaatttcg tgttcacatt
     2761 acgggccacg agaaaacttc tccttcgcgt gttacagagg cgcgtgcggg cacattatgc
     2821 cccacgacgg ccgggaagga taggattgcc aagcgtacgg cttggtgata atctctcgcg
     2881 cgtaatcttg aattaaacga aagcaccacc gcggccgtcc gggcgcgcgc cgtccgccca
     2941 cggaggcgcg ggcggacgga gctgacgcgt ccgcccggcc gtcgtcgccg ccgtggcgcc
     3001 gctcgccgcg cgcgtgcgcc gcccccggca atctcaaaaa ccttcggagg acgtatgctg
     3061 accgacttca atgatctccc ctcggcgctg gcgatgctcc agggcctcgt ccacggcgcc
     3121 gaccccggct cgatcatgaa ggtgatcgtg cgctggcttc acttcgtcgc cggaatagcg
     3181 tggatcgggc tgctctactt cttcaacctc gtcaacgtca acttcatgaa gggcctcgac
     3241 gccccgacga agaaggtcgt cgtccccgcg ctgatgccga aggcgctgtg gtacttccgc
     3301 tggggcgccc tcgtcaccgt gctcgccggg ctgatgtact acgtgatgta catcgtcccc
     3361 gaggagggcg gccccggcgc cgcgaacctc acctccggcc agcggctcgg cgtcatcggc
     3421 gtctggctcc tcgtcgtgct cgtcacctac gcgatcctct tcttcttcta ccgcgtgccc
     3481 gccctgacga aggacgggcg cgtgctggcc gtcgccgtcg ccgtgttgat ggtcgtgatg
     3541 gcggcggccg tcctctacgt gctcggaacg aagagcggca actgcgacac gctcggcaac
     3601 tgcaagtatc tcggcaacaa gacgctctcc atcggcgtcg gcggcggcat gggcatcctc
     3661 atgctcctca acgtgtgggg cgtcatctgg ccggcgcaga agcgcatcat cgccggcacc
     3721 atctcggggg aggccgcccc gcccgcgctc gcccgcgccg ccttcctcgc ctcgcgcacc
     3781 aacgcctggc tctcgctccc gatgctcttc ctgatggcgc agtcgcacga ctatgccttc
     3841 ttcgccggca agtaagacgg gcgaagggct gtccgttgtc cgtagttcgt ggtcagttgt
     3901 tctctctgcc cggcttgggc ctttcagtca cagcgccgag tcgcccgccg cgaacgactg
     3961 actaatgacg acggactacg gacagccttt cattcaaagg gggtttttcg atgagtgatg
     4021 tggtgaacta cgagccgcgg cagttcgacc tgagcggcct caacggcatc tccgaccgga
     4081 ctctggagat gcacttcaaa ctctacgagg gctacgtcaa ggaaacgaac aggctg
//
LOCUS       DASPKR010000649         6085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1651346, whole genome shotgun sequence.
ACCESSION   DASPKR010000649 DASPKR010000000
VERSION     DASPKR010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6085)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6085
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1651346"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..939)
                     /locus_tag="VD968_17330"
     CDS             complement(<1..939)
                     /locus_tag="VD968_17330"
                     /inference="COORDINATES: protein motif:HMM:NF024790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HYE16204.1"
                     /translation="MNFLALFRRQIQVARVSGIPVRIDYRWFLVFALSAWVVATGFEQ
                     GSVMTQLVRLDAGAAWAAGVLTTVGLFLSIFGHELSHALAGRVEGIASEEIVLHPFGG
                     LTRLSREPDNPRAEFRIAIAGPSSSFLFAVVSFALMYGARLAGYRAAAAGFSIVAYWN
                     LFIAVSNLLPGYPLDGGRVLRAFLWKRYGRLDEATRTAALGGQLIAGTLVIFGVWFWW
                     RLADPFRGLWMVLVGLFLWDAARSLTRTRSRKAQTVGDAMTAPVSVEPDSLVSHFVDN
                     LLPLHRQEAVAVAQGGSLHGILTLKDLKQLPRERWHH"
     gene            complement(1013..2128)
                     /locus_tag="VD968_17335"
     CDS             complement(1013..2128)
                     /locus_tag="VD968_17335"
                     /inference="COORDINATES: protein motif:HMM:NF010539.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HYE16205.1"
                     /translation="MASNSFMRKTRSFMSFAGLRDLVSDSMAIDLGSSTVIIAVRGRG
                     IVVDEPAVVAVNKISGETVAIGREAHEMLGREARDVTLVAPLVDGVVADFERTQKMLD
                     HFVRKARSGLSHFSRRAVMSVLSGITQVEQRALMAAAEEAHIGRVYMVEEGLAAAIGA
                     GVSVEDKKASAVVDIGGGTTNVAVVARGQIIYAQAERVGSLDIDEAIKDRLRRHHGLL
                     IGPATAERLKIELGSAIEPRDTSRSVQIKGRDVQTGAPRAIDIKSEEVCVAAEAPIRR
                     LSRIVNRALAELHPEVAADIYDRGVILTGGGALFDGMAEYLQRETSLRVTMPDDPRLA
                     IVNGLAQLYDEPLLLRRVARNEQSALLDESGGGAFEV"
     gene            complement(2237..3898)
                     /locus_tag="VD968_17340"
     CDS             complement(2237..3898)
                     /locus_tag="VD968_17340"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HYE16206.1"
                     /translation="MALLHITDAGGREWQFKLSPQALCTIGRAPDNSVVLNDPRASRY
                     HAHVKFQNGTYLIVDGSVDGKRSANHVFVAGKQRLEAPLRDGDRIKIGESEINFDLSD
                     ERRGEPEVRYEDKPLGHTQLLVSANDVIRAALSSRHPAAAAPSAELEDLRRKAKILAL
                     LYEMTKTLGSVFDLDSIFDKACEVIFSATPADRVCALLKSGDSADGEDDLKVVALRVR
                     DEKRSAQARRQPIGRTITRKVMRERQALLSQDAAADSEFAGVHSIVAQGVHSTICAPL
                     IADTRVHGALYADRLDPFTTFTRDDLELVSAVAAQTAVAVENASAHARLAREEVARAN
                     YSRFMPEYVVRQILEHPESFKLGGVNQTITVLFADIRGFTRLSEQAPPERVVQLLNYY
                     FTEMSDIIFAHGGTLDKYMGDGLMALFGAPTATPDDACNAVSAAVAMQRQMEVINGQL
                     RGEGLSEIRIGIGLHTGVATVGYIGSERRSEYTAIGDTVNLAARLEQNSQPGQILLSD
                     ATARAAQGSNCPFRPRPPMTVKNRVQPVPIFEVDWRHEQAVVSSQ"
     gene            4065..5879
                     /locus_tag="VD968_17345"
     CDS             4065..5879
                     /locus_tag="VD968_17345"
                     /inference="COORDINATES: protein motif:HMM:NF028240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative porin"
                     /protein_id="HYE16207.1"
                     /translation="MTFPMRQVILRAAAVCWLALAAAAGSNAQSGSQTPAPAPPKAEA
                     GGGPAGGLSGIEEVRQQLREQREEIERLRAAVRAQSRLVERLLERVERAEQAQQQRGG
                     QAHAAALVADASDTAGPPPPRGEGGGQSSQQLEERVARAEEAAKKANDAVSKQLGSIT
                     FGGDIRFRYESLYGQQNALASAENPAALGNPLTTRQRLRVRARFSARGKISDEFAWGL
                     RLSTGSFADVGSTNQTLTDFFNRKSFALDQAYITYKPKAARGFQLQAGKFDTPWLRTE
                     LTWDNDISPEGLSESYTREFKDSAVKSLTLVAWQLPMLERNSAFVLGPDGKVDFSASG
                     RAGRDLALYGGQARTELAPSKNFTLRLSAADLYFSGTQFITPAQVFGGNIQFPISVVI
                     PASGSTPARTVTAQVSVPRDLLVSGNANLGLSLANTNATNRDGRLSSGFNLVDLIARA
                     DFTRSRRWPVMLLFNFVTNTQAHDVVTAGPGGGDLLLENDEGQGFWAELQAGKDLLRL
                     PADKISRGDLMFNYTLARIEKDAILSPFNGSDLGQSTDARIHRFIVGYAAGPRVQVTL
                     TGFFTRRANGLLGPFAATPPGSLDRTLTRLQLDTVFRF"
BASE COUNT          969 a         2045 c         2079 g          992 t
ORIGIN      
        1 gtggtgccag cgctcgcggg ggagctgctt caagtccttg agcgtgagta tgccgtgaag
       61 gctcccgcct tgcgcgacgg cgacggcctc ctgccggtgc agcggcagga ggttgtcaac
      121 gaagtggctc actagcgagt cgggctcgac cgagacgggg gcggtcatag cgtcgcccac
      181 ggtctgcgcc ttgcgcgagc gcgtgcgcgt gagcgagcgc gccgcgtccc acaggaacag
      241 gccgacgagc accatccaga ggccgcggaa ggggtctgcg agcctccacc agaaccacac
      301 gccgaagatg acgagcgtgc cggcgatgag ctggcctccg agcgcggccg tgcgcgtagc
      361 ctcgtccagc cggccgtaac gcttccagag gaaggcgcgc agcactcgcc cgccgtcgag
      421 cgggtagccg ggcaggaggt tcgagacggc gatgaagagg ttccagtagg cgacgatgga
      481 gaagcccgcg gccgccgcgc ggtagccggc cagtcgcgcg ccgtacatca gcgcgaatga
      541 gacgacggcg aagaggaagc tcgaagacgg gccggcgatg gctatgcgga actctgcgcg
      601 cgggttgtct ggctcgcggc tgaggcgcgt caggcccccg aaagggtgga gcacgatctc
      661 ctcgctcgcg atcccctcta cgcggccggc gagcgcgtgc gaaagctcgt ggccgaagat
      721 ggagaggaag aggccgaccg tggtgagcac gccggcggcc cacgcggcgc ccgcgtcgag
      781 gcggacgagc tgcgtcatca cgctcccctg ctcgaagccc gtggcgacga cccacgccga
      841 gagcgcgaag acgaggaacc agcggtagtc aatccgcacc ggaatccccg agacgcgcgc
      901 cacctggatc tgccgccgga ataatgctaa gaaattcata aaaaagaagg cagagggcag
      961 taagaagaca gcgtgccgtt tactgccttc tgctttctgc cttctatctt tttcatactt
     1021 cgaaggcgcc gccgccgctc tcgtcgagca gggccgactg ctcgttgcgc gcgacgcggc
     1081 ggagcaggag cggctcgtcg tagagctgcg cgaggccgtt gacgatggct agccgggggt
     1141 cgtccggcat cgtgacgcgc aggctcgtct cgcgctgaag gtactcggcc atgccgtcga
     1201 agagcgcgcc gccgcccgtc agtatcacgc cgcggtcgta gatgtctgcg gcgacctccg
     1261 ggtgtagctc tgcgagcgcg cggttgacga tgcgcgacag gcggcggatg ggcgcctcgg
     1321 ccgcgacgca gacctcctcg ctctttatgt caatggcgcg cggcgcgccc gtctgtacgt
     1381 cgcgcccctt tatctggacg ctgcgcgagg tatcgcgcgg ctctatggcc gagcccagct
     1441 cgatcttgag tctctcggcc gtcgcggggc cgatgaggag gccgtggtgg cgccgcaggc
     1501 ggtcttttat cgcctcgtct atgtcgaggc tcccgacgcg ctcggcctgc gcgtagatga
     1561 tctgcccgcg cgccacgacg gccacgttcg tcgtcccgcc gcctatgtca acgaccgcgg
     1621 aagccttctt gtcctcgaca gagacgcccg cgcctatcgc ggccgccagc ccctcctcga
     1681 ccatatagac gcgcccgatg tgcgcctcct cggccgcggc cataagcgcc cgctgctcga
     1741 cctgcgtgat gccggagagc acgctcatca cggcgcggcg gctgaagtgg gagaggccgc
     1801 tgcgggcctt ccgcacgaag tggtcgagca tcttctgcgt gcgctcgaag tctgcgacga
     1861 cgccgtcaac cagtggcgcg accagggtca cgtcgcgcgc ctcgcgcccc agcatctcgt
     1921 gagcctcgcg gcctatggcg accgtctcgc cggaaatctt gttgaccgcc acgacggcgg
     1981 gctcgtcaac cacgatgccg cggcctcgca ccgcgatgat gacggtcgag gagccgaggt
     2041 caatcgccat cgagtccgac acgaggtcgc gcaggcccgc gaatgacatg aacgagcgcg
     2101 tcttacgcat gaacgagttt gaggccataa aagagtagtc agtagtcagc agtcagtagc
     2161 cggtagagaa cctttgccgt cttagcgtca gggcgaaagc gtcggcgccc gcctcgcggg
     2221 gcctactgtc tcctgcctac tggctactga ctactgcttg ctcgtgccgc cagtccacct
     2281 cgaagatggg tacgggctgg acgcggttct tgacggtcat cggcgggcgc ggccggaacg
     2341 ggcagttcga cccttgcgcc gcgcgcgccg tggcgtcgct caggagtatc tggccgggct
     2401 gcgagttctg ctccaggcgc gcggcaaggt tgacggtgtc gccgatggcc gtgtactcgg
     2461 agcggcgctc cgagccgatg tagcccacgg tggcgacgcc agtgtgcagg ccgatgccta
     2521 tgcgtatctc gctcaggccc tcgccgcgca gttggccgtt gatgacttcc atctgccgct
     2581 gcatcgcgac ggccgccgag actgcgttgc aggcgtcgtc gggcgtggcc gtcggcgcgc
     2641 cgaagagcgc catcagcccg tcgcccatgt acttgtcgag cgtgccgccg tgcgcgaaga
     2701 tgatgtcgga catctccgtg aagtagtagt tgagtagctg cacgacgcgc tcgggggggg
     2761 cctgctcgga gaggcgggtg aagccgcgta tgtcggcgaa gagcacggtt atcgtctggt
     2821 tgacgccgcc gagcttgaac gactccgggt gctcgaggat ctggcggacg acgtactcgg
     2881 gcatgaagcg gctgtagttt gcgcgcgcga cctcctcgcg ggcgaggcgc gcgtgcgcgc
     2941 tcgcgttctc gaccgcgacg gccgtctggg cggcgacggc gctgactaat tcgaggtcgt
     3001 cgcgcgtgaa ggtggtgaac gggtcgaggc ggtctgcgta gagcgcgccg tgaacacgcg
     3061 tgtccgcgat gagcggcgcg catatggtcg agtgcacgcc ctgcgcgact atggaatgga
     3121 cgcccgcgaa ctcggagtcg gccgccgcgt cctgagacag gagcgcctgc cgctcgcgca
     3181 tgaccttgcg ggttatggtg cggccgattg gctgccggcg cgcctgcgcc gagcgcttct
     3241 cgtcgcgcac tcggagggcc acgaccttga ggtcgtcctc tccgtccgcc gagtcgccgc
     3301 ttttgaggag cgcgcagacg cggtcggccg gggtggcgct gaagatgacc tcgcacgcct
     3361 tgtcgaagat gctgtcgagg tcgaagacgg agccgagcgt cttcgtcatc tcgtagagca
     3421 gggcgagaat cttcgccttg cggcggaggt cttcgagctc ggcgctcggc gcggcggccg
     3481 ccgggtgtcg cgaggagagc gcggcgcgta tcacgtcgtt tgcggagacg aggagctgcg
     3541 tgtggcccag cggcttgtcc tcgtagcgca cttcgggctc gcccctgcgc tcgtccgaga
     3601 ggtcgaagtt gatctcgctt tcgcctatct ttatgcggtc gccgtccctg agcggcgcct
     3661 ccagccgctg cttgcccgcg acgaagacgt ggttggccga gcgcttgccg tcaaccgagc
     3721 cgtcaacgat aaggtaggtg ccgttctgga acttgacgtg cgcgtggtag cgcgaggcgc
     3781 gggggtcgtt cagtaccacg gagttgtccg gcgcgcgccc gatggtgcag agcgcctgcg
     3841 gcgagagctt gaactgccac tcgcggccgc ccgcgtccgt tatgtgcaga agtgccataa
     3901 gggaaaaacc tctgccgaaa ttctacatgc aaaggttgct aagaggccag aggtttggcg
     3961 cgcgactgtt aacctgccgg caacattccg ttaaccccgt cttcatgcga cggcgatata
     4021 ttgttcggcg aagacgtaag cccttcggga gacaggagag agaaatgacc tttcccatgc
     4081 gccaagtcat tctccgcgcg gccgcagtct gctggctcgc cctcgccgcg gccgctggct
     4141 cgaacgcaca gtcgggctcg cagacgcccg cccccgcccc gccgaaggcc gaggcgggag
     4201 gtggcccggc gggaggcctc tccggcatcg aggaggttcg gcaacagctc cgggagcagc
     4261 gcgaggagat agagcgactg cgcgcggccg tccgcgcgca gtcgcggctc gtcgagcggc
     4321 tgcttgagcg cgtagagcgc gccgagcagg cgcagcagca gcggggcggg caggcgcacg
     4381 cggcggctct cgtcgccgac gcctccgaca cggccggccc gcccccgccg cggggcgaag
     4441 gcggcgggca gtcttcgcaa caactcgaag agcgcgtcgc gcgcgcggag gaggcggcga
     4501 agaaggcgaa cgacgccgtc tcgaagcagc tcggctcgat aaccttcggc ggcgacatac
     4561 gcttccgcta cgagtcgtta tacggccagc agaacgcgct cgcgtcggcc gaaaaccccg
     4621 cggcgctcgg caacccgctc acgacgcgcc agcgcctgcg cgtgcgcgcg cgcttctcgg
     4681 cgagggggaa aatctccgac gagttcgcgt ggggcctgcg gctctctacg gggagcttcg
     4741 ccgacgtggg ctcgacgaac cagacgctca cagacttttt caaccgcaag agcttcgccc
     4801 tcgaccaggc ctacatcact tacaagccga aggcggcgcg gggcttccag ctacaggccg
     4861 ggaagttcga cacgccgtgg ctgcgcaccg agcttacctg ggacaacgac atttcgcccg
     4921 agggcctgag cgagagctac acgcgcgagt tcaaggactc cgctgtcaag agcctgacgc
     4981 tcgtcgcgtg gcagttgccg atgctcgagc gcaactcggc cttcgtgctc ggcccggacg
     5041 gaaaggttga cttctcggcg tcggggcgcg ccggccgaga cctcgcgctc tacggcggtc
     5101 aagcgcgcac ggagctcgcc ccgtcgaaga acttcacgct gcgcctctcc gccgcagacc
     5161 tttacttctc cggcacgcag ttcatcacgc cagcgcaggt cttcggcggc aacattcagt
     5221 tccccatctc agtcgtaatc cccgcctcgg gctctacccc cgcgcgcacc gtcacggcgc
     5281 aggtctccgt gccgcgcgac ctgctcgtct ccggcaacgc caacctcggt ctctcgctcg
     5341 ccaacacgaa cgccacgaac cgcgacgggc gcctctcctc cggcttcaac ctcgttgact
     5401 taatcgcccg cgccgacttc acgcgcagca ggcgctggcc cgtcatgctc ctcttcaact
     5461 tcgtcacaaa cacgcaggcc cacgacgttg tgacggcggg gccgggcggc ggcgacttgc
     5521 tactagagaa cgacgagggg cagggcttct gggccgagct ccaggccggc aaggacttgc
     5581 tccgccttcc cgccgacaaa atctcgcgcg gcgacctcat gttcaactac acgctcgccc
     5641 gcatcgagaa ggacgccata ctttctccct tcaacggcag cgacctcggc cagtcaacgg
     5701 acgcgcgcat acaccgcttc atcgtcggct acgccgccgg cccgcgcgtg caggtaacgc
     5761 tcacgggctt cttcacgcgg agggcgaacg ggctgctcgg ccccttcgcc gcgacgccgc
     5821 ccggctcgct cgaccgcact ctcacacggc tgcaactcga cacggtcttc cggttctgag
     5881 gtgcggcgtt agggcaaata accggccgct gttcgccggc ggcggtcgcg ctcgcgcacg
     5941 gcggcggggc atcgtgctcg ccgcgccggc ggcggagagc gagtgagatt tcgtcgccct
     6001 ctccggcgcc ttcacgcgcg ttcgccgttc ggccgccgtt gcaatttcga caagaaaatt
     6061 ttctctattc gcccgataaa gtctc
//
LOCUS       DASPKR010000650         5049 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1527139, whole genome shotgun sequence.
ACCESSION   DASPKR010000650 DASPKR010000000
VERSION     DASPKR010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5049)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5049
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1527139"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1279)
                     /locus_tag="VD968_17350"
     CDS             complement(<1..1279)
                     /locus_tag="VD968_17350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16208.1"
                     /translation="MRERAIAEYHEMLRADGGATRELFARLKAGMREARLTYGGREIG
                     VSLRPHLLTGEQYARLARCSETLAGAFEKLGRAFVADPALMSRVGMTERERRFALVEP
                     GYECHAVNTRLDAFTHGPEVKFVEYNAENPSSLTDQPGLNRLAFEVPAMRALAARYRL
                     REFDPPAALLASLVETYREWLGRDEPPRVAIVDWKGLPTSNEFELLREYFERRGIASV
                     VCSPEELEYDGRTLRRGDFRVDLIYKRIIIHELLTRLDDAHPILAAYLDGSVCLVNSL
                     RCKPLHKKAAFELLTDESEPAVRFDAREREVIRECVPWTRRVSERKTTRGGAEIDLIG
                     HVRRRRPEFVLKPNDDYGGAGVVIGPRASESEWDDALEAALAADYVVQEAVELRTEEF
                     PVFDEERWALQPVYVDTNPFLFRGRVEGAMVRLS"
     gene            complement(1369..4077)
                     /gene="ppdK"
                     /locus_tag="VD968_17355"
     CDS             complement(1369..4077)
                     /gene="ppdK"
                     /locus_tag="VD968_17355"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050242 - pyruvate, phosphate dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0015976 - carbon utilization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HYE16209.1"
                     /translation="MSQNIGQKWVYLFEEGDGRQRALLGGKGAGLADMTRAGLPVPPG
                     FVVTTAACNAYYASNKNFPEGMWEQVIEGLKALEAKTGKRFGDPENPLLVSVRSGAPF
                     SMPGMMDTILNLGLNEQTAQGLAAQTGDLRFALDAYRRFGTLFGEIVMGIAHEKFERV
                     MERFKAKTEGGRDTDLSPEQLQEVIASQRQIISAEQGGHVIPEDPYEQLRVAIAAVFN
                     SWMGRRAVDYRRVNRIPDDLGTAVNVQAMVFGNMGQASATGVAFTRNPSTGEKKLYGE
                     FLLNAQGEDVVAGIRTPQPISELQRGLPEAYEQFTQIAELLERHYRDMQDVEFTIERG
                     RLWMLQTRTGKRTGAAAVRVAVDMVREGLIDKATAVRRVTPEQLDQLLHPTVDPKTDA
                     KVIAKGLPASPGAAQGRVVFDPDEAEELARDGELVVLVRQETSPDDFHGMVAAQAIVT
                     ARGGMTSHAAVVARGMGKSCVCGASALNIDYGQQQFNVNGTVVTKGEWITVDGSTGRV
                     FVGQVPTVQPALGEDFRELMSWADEFRRLRVRANADTPHDTQVARDFGAEGVGLCRTE
                     HMFFGEGRLAAMREMILAEGAGARQKALEKLLPLQRKDFEGIFAAMAGLPVTIRLLDP
                     PLHEFLPRMEELLGELNELKLQVRRAESIRDTDRLLDEIAEKRRLLHQVERLHEANPM
                     LGHRGCRLGMMFPEVTRMQARAIFEAACHLAGEGVSVSPEIMVPLVSTAEELRRQREL
                     IEEVARQVTGEHGMTLSYTVGTMIELPRAALTADRIAEHADFFSFGTNDLTQTTYGLS
                     RDDSGRFLSAYVETKVMPDDPFQVLDREGVGQLVRMGTERGRSVKPGLKVGICGEHGG
                     EPRSIAFCHETGLDYVSCSPFRVPLARLAAAQAALEEKDGKVAADK"
     gene            4418..>5049
                     /gene="rsmI"
                     /locus_tag="VD968_17360"
     CDS             4418..>5049
                     /gene="rsmI"
                     /locus_tag="VD968_17360"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: protein motif:HMM:NF012799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HYE16210.1"
                     /translation="MPDGKGTLYLVATPIGNLEDITRRALRVLSEADVVACEDTRRTR
                     TLLEHFGIRAKTVSYHEHNERERAEELASMVEGGASVAVVTDAGTPGVSDPGYRVVRA
                     CVERGLTVVPVPGAAAFVAALTASGLPTDEFYFGGFLPARPHARRARLAEVRALRATL
                     VFYETPHRIAQALADAREILGEREAAVARELTKLHEEVARGRLTQLAERFS"
BASE COUNT          743 a         1711 c         1752 g          843 t
ORIGIN      
        1 cggagaggcg aaccatcgcg ccctctaccc gaccgcggaa gaggaagggg ttcgtgtcaa
       61 cgtacacggg ctgcaaggcc cagcgctctt cgtcgaagac ggggaactcc tcggtgcgga
      121 gctcgaccgc ctcctgcacg acgtagtcgg ccgcgagcgc ggcctcaagt gcgtcgtccc
      181 actccgactc gctcgcccgc gggcctatga cgacgcccgc gccgccgtag tcgtcgttcg
      241 gcttgaggac gaactccggg cggcgccgcc tcacgtgccc gattaaatct atctccgcgc
      301 ccccgcgcgt cgtcttgcgc tccgagacgc ggcgagtcca cggcacgcac tcgcgtatga
      361 cttccctctc gcgcgcgtcg aagcgcacgg ccggctccga ttcgtcggtc agaagctcga
      421 aggcggcttt cttgtgaagc ggcttgcagc gaagggagtt gacgaggcag acgctgccgt
      481 cgaggtaggc ggcgaggatg gggtgggcgt cgtcgagccg cgtgagcagc tcgtgaatga
      541 tgatgcgctt gtagattaaa tccacgcgga agtcgccgcg gcgcaacgtg cgcccgtcgt
      601 actccagctc ttccggcgaa cagacgaccg acgcgatgcc gcgacgctcg aagtactcgc
      661 gcagcagctc gaactcgtta gaagttggca ggcccttcca gtcaacgatt gcgacgcgcg
      721 gcggctcgtc gcgcccgagc cattctcggt aggtctcgac taagctcgcg aggagcgccg
      781 ccggcgggtc gaactcgcgc agtcggtagc gtgcggcgag ggcgcgcatc gccggcacct
      841 cgaacgcgag gcgattgagg cccggctggt ctgtgaggct cgaagggttc tcggcgttgt
      901 actctacgaa cttgacctcc gggccgtgcg tgaaggcgtc gaggcgcgtg ttgacggcgt
      961 ggcactcgta gcccggctcg accagagcga agcggcgctc gcgctccgtc atcccgacgc
     1021 gcgacatgag cgcggggtcg gctacgaagg ctcgcccgag cttctcgaac gcgcccgcca
     1081 gagtttcgga gcagcgggcg agccgcgcgt actgctcgcc cgtcaggagg tgcggcctga
     1141 gcgagacgcc tatctcgcgc ccgccgtagg tgagccgcgc ctccctcatc ccggccttca
     1201 ggcgcgcgaa cagctctcgc gtcgcgccgc cgtcggccct gagcatctcg tggtactcgg
     1261 caatcgcccg ctcgcgcata ccggttgcgg attgcgggat taaaaggcga ggaggttgaa
     1321 gacagtgctt ctgccttcaa ccctccgcct ccaatcagca atccgaaatt acttgtctgc
     1381 cgccaccttc ccgtccttct cttcgagcgc ggcctgcgcg gcggcgaggc gcgcgagggg
     1441 gactcggaag ggcgagcagg agacgtaatc caggcccgtc tcgtggcaga aggctatcga
     1501 gcgcggctcg ccgccgtgct cgccgcagat gccgaccttg aggcccggct tcacggagcg
     1561 gccccgctcc gtccccatgc ggacgagctg gccgacgccc tcgcggtcta agacctggaa
     1621 cgggtcgtcg ggcatcacct tcgtctcgac gtaggcggag aggaaccggc ccgagtcgtc
     1681 gcgcgacagc ccgtaggtcg tctgcgtgag gtcgttcgtg ccgaacgaga agaagtcggc
     1741 gtgctcggct atccggtcgg ccgtcagcgc cgcgcgcggc agctctatca tcgtgccgac
     1801 cgtgtagctc agagtcatgc cgtgctcgcc tgtgacctgg cgggcgacct cttcgataag
     1861 ctcgcgctgg cggcgaagct cctcggccgt cgagacgagc ggcaccatta tctcgggcga
     1921 gaccgagacg ccctcgcccg cgaggtggca cgcggcctcg aagatggcgc gtgcctgcat
     1981 gcgcgtcacc tcggggaaca tcatgccgag gcggcagccg cggtggccga gcatggggtt
     2041 cgcctcgtgc aggcgctcga cctgatgtag gagccggcgc ttctcggcta tctcgtcgag
     2101 caggcggtct gtgtcgcgta tgctctcggc gcgtcgaacc tgtagcttca gctcgttcag
     2161 ctcgccgagc agttcttcca tgcgcggcag gaactcgtgg agcggcgggt cgagcaggcg
     2221 gatggttacg ggcaggcccg ccatcgccgc gaagatgccc tcgaagtcct tgcgctggag
     2281 cggcaggagt ttttcgagcg ccttctggcg ggcgccggcg ccctcggcca gtatcatctc
     2341 gcgcatcgcc gcgagccgtc cctcgccgaa gaacatgtgc tcggtgcggc acaggcccac
     2401 gccctcggcg ccgaagtcac gcgcgacctg cgtgtcgtgc ggcgtgtctg cgtttgcgcg
     2461 cacgcgcagg cgccggaact cgtcggccca ggacataagc tcgcggaagt cttcgccgag
     2521 cgcgggctgc acggtcggca cctggccgac gaagacgcgg cccgtcgagc cgtcaaccgt
     2581 tatccactcg cccttcgtga cgaccgtgcc gttgacgttg aactgctgct ggccgtagtc
     2641 aatgttcagc gccgacgcgc cgcagacgca cgacttgccc atgccgcgcg ccacgacggc
     2701 cgcgtggctc gtcataccgc cgcgggccgt gacaatcgcc tgcgcggcga ccatgccgtg
     2761 gaagtcgtcc gggctagtct cctgacggac gagcacgacg agctcgccgt cgcgcgcgag
     2821 ttcttcggcc tcgtccgggt cgaagacgac gcggccctgc gctgcgccgg ggctggcggg
     2881 cagccccttc gcgatgactt tcgcgtccgt cttggggtca accgtcgggt gcaggagctg
     2941 gtctagctgc tcgggcgtga cgcgccggac ggcggtcgcc ttgtcaatga gcccctcgcg
     3001 aaccatgtca acggcgacgc gcaccgcggc ggcgccggtg cgcttgcccg tgcgtgtctg
     3061 tagcatccag aggcggccgc gctcgatggt gaactccacg tcctgcatgt cgcggtagtg
     3121 gcgctcaaga agctcggcaa tctgcgtgaa ctgctcgtag gcttcgggca gcccgcgctg
     3181 caattcgctg atgggctgag gggtgcgaat ccccgcgacc acgtcctcgc cctgggcgtt
     3241 taagaggaac tcgccgtaga gcttcttctc gccggtcgag gggttgcgcg tgaaggctac
     3301 gcccgtggcg ctcgcctgcc ccatgttgcc gaagaccatc gcctgcacgt tgacggcggt
     3361 gccgaggtcg tcggggatgc ggttgacgcg gcggtagtca actgcgcgcc ggcccatcca
     3421 cgagttgaag acggcggcga tggcgaccct gagctgctcg taggggtctt ccgggatgac
     3481 gtggccgccc tgctcggccg agattatctg gcgctgcgag gcgatgactt cctgaagctg
     3541 ctcgggcgag aggtctgtgt cgcggccgcc ctcggtcttg gccttgaagc gctccatgac
     3601 gcgctcgaac ttctcgtggg cgatgcccat gacgatctcg ccgaagaggg tgccgaagcg
     3661 tcggtaggcg tctaaggcga agcgcaggtc gccggtctgc gcggcgagcc cctgcgcggt
     3721 ctgctcgttt aagccgaggt tgaggatcgt gtccatcatg cccggcatcg agaagggcgc
     3781 gcccgagcgc acggagacga gaagcgggtt ttcggggtcg ccgaacctct tgcccgtctt
     3841 ggcctcgagc gccttcagcc cctcgatgac ctgctcccac ataccttcgg ggaaattttt
     3901 gttgctggcg taataggcgt tgcacgccgc ggtggtcacg acgaagccgg gggggactgg
     3961 cagccccgcc ctcgtcatgt cggccaggcc ggcgcccttg ccgccgagca gggcgcgctg
     4021 ccggccgtcg ccctcctcga agagataaac ccacttctgt ccaatattct gtgacatggc
     4081 tttgcttccc aactaggtta actggcaggc tctgaaatcg ggggcgaggg gcgggccgaa
     4141 ggcccagtgc gcgcggcggc ccttcctcga agcggcccgg cgttctgggc tccgcgcccg
     4201 ttacgccgga gactttaaac cccggaggcg gaaaggcgca acggttatcg tgcggcgggc
     4261 cgtgggttgc ggaatgacga gaggccagcc gttcttcttt gcgtgccaaa tttgcgctac
     4321 ggcttctcgc ccgccgccgt gccagccgta caagtcccag cggtggagaa tcctgccgcc
     4381 tgcggccccg gccgcctttc gtgcgacaat gcgggccatg ccggacggta agggcacact
     4441 ctacctcgtc gcaacgccca tcggtaacct cgaggacatc acgcgcaggg cgctgcgcgt
     4501 gctctcggag gccgacgtgg tggcgtgcga agatacgcgc cgcacgcgca cgctcctcga
     4561 acacttcggg atacgcgcca agaccgtgag ctaccacgag cacaacgagc gcgagcgcgc
     4621 cgaggagctg gcctcgatgg tcgagggcgg ggcgagcgtg gccgtcgtga cggacgccgg
     4681 cacccccggc gtgagcgacc ccggctaccg ggttgtgcgc gcctgcgtcg agcgcggatt
     4741 gacggtcgtc cccgtgccgg gcgcggcggc cttcgtcgcg gcgctcacgg cctcggggct
     4801 ccccacggac gaattctact tcggcggctt cctgccggcc cgcccgcacg cgcgccgcgc
     4861 gcggctggcc gaggtgcgcg cgctacgggc cacgctcgtc ttctacgaga cgccgcaccg
     4921 catagcgcag gcgctcgcgg acgcgcgcga aatcctcggc gagcgcgagg cggccgtcgc
     4981 gcgggaactt acgaagctgc acgaggaggt cgcgcgcggc cggctcacgc agcttgccga
     5041 gcgcttctc
//
LOCUS       DASPKR010000651         9309 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_235218, whole genome shotgun sequence.
ACCESSION   DASPKR010000651 DASPKR010000000
VERSION     DASPKR010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9309)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9309
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235218"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1521)
                     /locus_tag="VD968_17365"
     CDS             complement(<1..1521)
                     /locus_tag="VD968_17365"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HYE16211.1"
                     /translation="MTQRTSTPRLLLLFFALLTFAPALAAQDLDARLREIDEYAARAG
                     RDWKVPGFAVAIVKDDKVVFAKGYGVRELGKPGTVDADTLFAIASNTKAFTSAALAVL
                     VDEGKLKWDDPVTKYLPYFQMYDPYVTREITVRDLLSHRSGLATFGGDLLWFESTYPR
                     EEIIRRARYLKPTSSFRSRYGYQNIMFLAAGEIVPAVTGKSWDDFVRERFFAPLRMKR
                     TTTSHKQLLATPNIATPHNEMDGKLRVIHYDNVDNAGGAAAINSSVADMAQWVRLQLG
                     RGTFEGKKIFGADRSREMWTPHTISGAVSESAEKFNPTTHFNLYGLGWALNDYQGRKV
                     VSHGGGLDGMISRVAMMPEENLGLVVLTNSETPLPTVLSNKIFDVFLGVPKRDWSADY
                     LARARASREAAEAAAKKVEESRVTGTKPSLPLAGYAGTYTGAMFGDARVSEENGRLVV
                     RLVPSPNFVGDLEHWHFDTFRIKWRESIVYPFPRGFVTFTLDQQGRASEMKIDVPNP"
     gene            complement(1585..2583)
                     /locus_tag="VD968_17370"
     CDS             complement(1585..2583)
                     /locus_tag="VD968_17370"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003953 - NAD+ nucleosidase activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="toll/interleukin-1 receptor domain-containing
                     protein"
                     /protein_id="HYE16212.1"
                     /translation="MRVFISYRRDDSAGHSGRLAERLVKEFGAGSVFYDLETIGYGES
                     FPERIRRAVAESDVLLAVIGRRWLTAADASGARRLDSPDDFVRIEIASALGRGSRVIP
                     VLVQGAAMPRADELPSDLKALAERHAFELSDARWAYDTERLIDALRGKPVARPDKKRL
                     RVLGAAGVALAAVLGVYFLNGYFRRVGQGFDACVREQFPGTPREREAKVPLGAKDYVA
                     LEPGRPKDGTLVIRLTDSGRDLGAVALGHVPGDPARKAEPGFKVEKVLGPDCQQVTDY
                     DNEGVPGRKLYMANWDTLRLPLGGKTYRLRVGHHLDTDTVMANFSEAEPAATPPAP"
     gene            complement(2607..5615)
                     /locus_tag="VD968_17375"
     CDS             complement(2607..5615)
                     /locus_tag="VD968_17375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16213.1"
                     /translation="MKRLLRLRVVWVLAAAALAIPAGRALSQGGGPEERARHARALEE
                     ALAELRLHPRDAYLQYVALQLARRSGRFDEVAAQVDAMIPHDGPVTARERSRDVDLFG
                     VFTGALAVQESLQLDTMRVATTGTREAPPPSATAVNMNGPLPPGNFNGNVNMTGGRRR
                     PQRRGRARARARQSRPPARAGQGNVNAPPPPWMGNANVAALPRYRRDERVAVSALEGP
                     TVKSHPWEKMLAGRRPEVTQLARSVPEDFYLAEFRTLTKLLDTVDAGDLWATHLFNQA
                     FGEAKSSGVGDRLKRQLAIETDPLTRPFYDLVVEGVAAAGSDLFVREGSDVTLLFRVK
                     QPLVFNLRMGSFLDNAERSNPKAVRTTGDYMGVPFVQIVTPERDVSVVAADPAPGLHV
                     RSNSMAAFRRVVEAVLGKDSRGRPVRSLGGTQEYAYIRTLMPAGDESKEDGLFYLSDP
                     FIRRLVGPELKLTERRRLLCYNHLRMIGHAALLFRTEQGRWPSSLGEMERAGASPGAF
                     GRGALSCPDGGSYSLSADATAGSCSRHGHALRLTPNIEIPVSRVSGEEANEYLAFLED
                     YNRYWRVYFDPIAIRLKVTPAEYRAETIILPLIDNSIYTGLASALGGEAEPPGRLPVP
                     RRNIFSAFFRLNKQTLLKSFTEFERDAADAPQRGQRGGAAAEAADAQYMQMAAEGLGN
                     QLGLHIYDAEPTFDLNAARLLGLMVGSGAGGAASSLGTEELFITLALASLNTPVYLSA
                     PARDAAVVDRMLERLDAHLAISARRSQRRGRLDFEQDFFKYRLSGGQTARAFGFRFGP
                     AKLRFFWARVGRGLYVASKPFILEDLAALEAEAPPQGETAQVRAGDEDPAAHAEALVR
                     AYNWQHVLNDYRLSWAENEREACINNLGPLADAARALTSRAPAPSAGEAAAPTGEALD
                     RAVLELADRLHAVRHFCPDGGQYRVAPDGRSVSCTVHGTAAEPRQPTAPSDRSAAGQT
                     MRALEGASAALTFTEDGLRAVLTVRRKAKE"
     gene            complement(5803..7455)
                     /locus_tag="VD968_17380"
     CDS             complement(5803..7455)
                     /locus_tag="VD968_17380"
                     /inference="COORDINATES: protein motif:HMM:TIGR04514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GWxTD domain-containing protein"
                     /protein_id="HYE16214.1"
                     /translation="MARHQRILSLALALGVALSAAPAALAQKDKKQSGDSGDPMSRER
                     KVRNEKRDVFKNWLAEDVSYIITDEERKAFKKLVTDEEREQFIEAFWRRRDPDPDTEV
                     NEYLEEHYERVAYANQHFSSGIPGWKTDRGRIYIMYGPPHERETHPSGGAYERPSYHG
                     GGSTTTYPFEVWFYRYLPGIGSGIEIEFVDPTGTGEYRIARSPDEKDAMLHIPGAGLT
                     LMEQLGLANKADRVAGYGGFGYTGPGAREQDSPFSRLILYTDLQKPPQVNDVLEKSLL
                     ATTSTGAVESSALDVDARVDFFRASDERVMTALTIQTDNNDLTFKDVGGVQQARVNIY
                     GRVTSVAGRRVTSFEDPVTTEASVEELTTMKDRKSAYQRVLPLAPGNYKVDLIIRDIH
                     SGVQQIKSIGFEVPKYTPQKLGASSLVLAIKLQALNDQLPGMFTIGPYKVIPNLSGKY
                     NRGQDVGIYMQVYNAGIDQTTLRPSVDVEYVLAKDGKEVFKQAEDWRGLSDSGQRLTL
                     ARLLPTDGLSAGEYELSVRIRDRVSGQSLQPSSKFTVVEPQK"
     gene            complement(7704..8777)
                     /gene="tatC"
                     /locus_tag="VD968_17385"
     CDS             complement(7704..8777)
                     /gene="tatC"
                     /locus_tag="VD968_17385"
                     /inference="COORDINATES: protein motif:HMM:NF013097.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HYE16215.1"
                     /translation="MSSTLLGTENDEGEGGEEQAGSQMSFLEHLDELRRRLIRSFLFL
                     AVALLACWFVSDRIYNFLSIPVRRALAEAAQRPVPLEGLTGGEAIQPVGSLKEGDAGR
                     YVFAEATRLGTGVVPAGAAVQARVARDGEGRLGLFTDEALIAGQAVIPKGVRLPVDFA
                     AAPGALPGIEDRLVVRTAIEPFSLYLQVSLYGAICLSLPFLLWQVWAFVSPGLYPHER
                     GYALPFIALSTISFVVGAAFAYKILFPPAVSYLLGLGQDFRLFLNASDYFDFIILIML
                     AMGFVFQMPAVTYVLSRIGLIDARFLLRHWRISTIVILVAAAVLSPTSDILNMMLFAA
                     PMAVLYLISILIAWMFARPRTVE"
     gene            complement(8845..9297)
                     /gene="tatA"
                     /locus_tag="VD968_17390"
     CDS             complement(8845..9297)
                     /gene="tatA"
                     /locus_tag="VD968_17390"
                     /inference="COORDINATES: protein motif:HMM:NF011430.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HYE16216.1"
                     /translation="MPTVLLVFEFLGTTELMVIALVALIIFGPRKLPEIGRKLGRGMA
                     EFKRASEDFKRTWEYEVEVERRQEAAPRVEQETAAARTSLLEEGSRGETAEDIFNGQA
                     VHPAAEPDDAQTIPRTPPGATAPPEAEADTAAAPAHEEPEADAREPTA"
BASE COUNT         1435 a         2962 c         3387 g         1525 t
ORIGIN      
        1 cgggttcggc acgtctatct tcatctcgga ggcgcggccc tgctggtcga gcgtgaaggt
       61 gacgaagccg cgcgggaacg gatagacgat ggattcgcgc cacttgatgc ggaaggtgtc
      121 gaagtgccag tgctccaaat cgccgacgaa gttgggcgac ggcaccaggc ggacgacgag
      181 cctgccgttc tcctccgaga cgcgcgcgtc gccgaacatc gcgccggtgt aggtgccggc
      241 gtaaccggcg agtgggagcg agggcttcgt gcctgtgacg cgcgactcct cgactttctt
      301 cgcggcagcc tcggcggcct cgcggctcgc cctggcgcgc gcgaggtagt cggcgctcca
      361 gtcgcgcttg gggactccca aaaacacgtc gaagattttg ttggacagca cggtcgggag
      421 cggcgtctcg ctgttggtga ggacgactag gccgaggttc tcttcgggca tcatcgccac
      481 gcgcgagatc atgccgtcga gcccgccgcc gtgcgagact accttgcggc cctggtagtc
      541 gttcaaggcc caacccagcc cgtagaggtt gaagtgcgtc gtcgggttga acttctcggc
      601 cgattcgctt acggcgccgg agatggtgtg cggcgtccac atctcgcgcg agcggtctgc
      661 gccgaaaatc ttcttgccct cgaaggtgcc gcggccgagc tggagccgaa cccactgggc
      721 catgtcggcg accgacgagt tgatggccgc cgcgccgccc gcgttgtcaa cgttgtcgta
      781 gtgaatcacg cggagcttgc cgtccatctc gttgtgcggc gtcgcaatgt tgggggtggc
      841 gagaagctgc ttgtggctcg tcgtcgtgcg cttcatgcgg agcggcgcga agaagcgctc
      901 gcgcacgaag tcgtcccagc tcttgcccgt gacggccggc acaatctcgc ccgcggcgag
      961 gaacattatg ttctggtagc cgtagcggct gcggaagctc gaagtgggct tgaggtaacg
     1021 ggcgcggcgg attatctcct cgcgcgggta ggttgactcg aaccagagca ggtcgccgcc
     1081 gaaggtggcg aggccgctgc ggtggctcaa aaggtcgcgc acggtaatct cgcgcgtcac
     1141 ataagggtcg tacatctgga agtagggcag gtacttggtg acggggtcgt cccacttgag
     1201 cttcccttcg tcaaccagga cggcgagcgc cgcggacgtg aacgccttcg tgtttgaggc
     1261 gatggcgaac agtgtgtcgg cgtcaaccgt ccccggcttc cccaactcgc gcacgccgta
     1321 gcctttggcg aagacgacct tgtcatcctt cactatcgcc acggcgaagc ccggcacttt
     1381 ccagtcgcgc ccggcgcgcg cggcgtactc gtcaatctct ctgagacgtg cgtctaaatc
     1441 ctgcgcggcg agcgccggcg cgaaggtgag cagggcgaaa aagagtagga gtaagcgggg
     1501 cgttgacgtg cgctgagtca tagtccgggc ggcctctcca ggtgttttcg gtaatcgtcc
     1561 acgaaggcgt gcgggcgtgt caaatcaagg ggcgggcggc gttgccgcgg gctccgcctc
     1621 ggaaaaattc gccatgacgg tgtcggtgtc aaggtggtgg ccgacgcgca gcctgtaggt
     1681 cttgccgccg agcggcaggc ggagcgtgtc ccagttcgcc atgtatagct tccggccggg
     1741 gacgccctcg ttgtcgtagt cggtgacctg ttggcagtcg gggccgagca ccttctcgac
     1801 cttgaagccg ggctcggcct tgcgcgcggg gtcgccgggg acgtggccga gggcgacggc
     1861 gccgaggtcg cgccccgagt ctgtgagcct gatgacgagg gtgccgtctt tcggccggcc
     1921 cggctccagg gcgacgtaat ccttcgcgcc cagcggcacc ttcgcctccc gctcgcgcgg
     1981 ggtcccgggg aactgctcgc gcacgcaggc gtcgaagccc tgcccgacgc gacggaaata
     2041 accgttcaga aagtacaccc cgagcacggc ggccagcgcc acgcccgcgg ccccgagcac
     2101 gcgcagccgc ttcttgtcgg ggcgggccac aggcttcccg cgcagcgcgt ctatgaggcg
     2161 ctcggtgtca tacgcccagc gcgcgtcgct cagttcgaag gcgtgccgct cggcgagggc
     2221 cttgaggtcg gagggcagtt cgtcggcgcg cggcatcgcg gccccctgaa caagtacggg
     2281 gatgacgcgc gagcccctgc cgagcgcgct ggcgatttcg atgcgcacga agtcgtcggg
     2341 agagtcgagg cggcgcgcgc ccgaagcgtc ggccgccgtg agccagcgcc gcccgatgac
     2401 ggccagcagc acgtcgctct cggccacggc cctgcgaatc ctctccggga aagactcgcc
     2461 gtacccgatt gtctcgaggt cgtagaagac cgagccggcg ccgaactctt tcaccagccg
     2521 ctcggccagc cggcccgagt ggccggcgct gtcatcccgc ctgtagctga tgaagacgcg
     2581 catgatgagc ctcccgtcgg ccgcgcctac tccttcgcct tccgcctgac ggttaagacc
     2641 gcgcgcaggc cgtcctcggt gaaggttagc gcggcgctcg cgccttcgag cgcgcgcatg
     2701 gtctggccgg cggcgctccg gtcggagggg gcggtgggct gtcgcggctc cgcggccgtg
     2761 ccgtggactg tgcacgagac agacctgccg tccggcgcga cgcggtactg gccgccgtcg
     2821 gggcagaagt ggcgaacggc gtgcagccgg tcggccagct ctaagacggc gcggtcgagc
     2881 gcctcgcccg tgggcgccgc ggcctcgccc gctgacgggg cgggcgcgcg cgacgtgagg
     2941 gcgcgggcgg cgtccgcgag cgggccgagg ttgttgatgc acgcctcgcg ctcgttctcg
     3001 gcccagctaa gccggtagtc gttgaggacg tgctgccagt tgtacgcacg cacgagcgcc
     3061 tcggcgtgcg cggccgggtc ttcgtcgccg gcgcgcacct gcgccgtctc gccttgcggc
     3121 ggcgcctccg cctcgagcgc ggcgagatct tcgaggatga agggcttgct ggcgacgtag
     3181 aggccgcgac ccacgcgcgc ccagaagaag cgaagcttcg ccgggccgaa gcggaagccg
     3241 aaggcgcggg cggtctgccc gcccgagagg cggtacttga agaagtcctg ctcgaagtcg
     3301 agcctgcccc tgcgctgcga ccgccgcgcg gagatggcaa ggtgggcgtc gagccgttcg
     3361 agcatgcggt caaccacggc ggcgtcgcgc gcgggggccg acagatagac cggcgtgttg
     3421 agcgaggcga gcgcgagcgt gatgaaaagc tcttccgtgc cgagcgagct ggccgcgccg
     3481 cccgcgccgc tcccgaccat caagcccagc aggcgcgcgg cgtttaagtc gaacgtcggc
     3541 tccgcgtcgt agatgtgcag gccgagctgg ttgccgagcc cttcggccgc catctgcatg
     3601 tactgcgcgt ctgccgcttc ggcggcggcg ccgccgcgtt gccctctctg cggcgcgtcg
     3661 gccgcgtcgc gctcgaactc cgtgaagctc ttgaggagcg tctgcttgtt gaggcgaaag
     3721 aaggcgctga agatgttgcg gcgcggtaca ggcagacggc cgggcggctc cgcctcgccc
     3781 ccgagcgcgg aggcgaggcc cgtgtagatc gagttgtcta tgagcggaag gataatggtc
     3841 tcggcgcggt actcggcggg cgtcaccttg aggcgtatgg cgatggggtc gaaatagacg
     3901 cgccagtagc ggttgtagtc ttccaggaag gcgaggtact cgttcgcctc ctcgccgctc
     3961 acgcgcgaga cgggtatctc tatgttgggc gtcagtcgca gcgcgtggcc gtgacgcgag
     4021 caggagccgg ccgtagcgtc cgccgagagc gagtaggagc cgccgtcggg gcaggagagc
     4081 gccccacggc cgaacgctcc gggcgaggcg cccgcgcgct ccatctctcc gagcgacgag
     4141 ggccagcggc cctgctccgt gcggaagagc agcgcggcat ggcctatcat gcgcaggtgg
     4201 ttgtagcaga gcaggcgccg ccgctccgtg agcttcagct ccgggccgac gaggcggcgt
     4261 atgaacgggt cggagaggta gaagaggccg tcctctttcg actcgtcgcc cgccggcatg
     4321 agcgtccgaa tgtaggcgta ctcctgcgtt cctccgaggc tgcgcaccgg ccgcccgcgc
     4381 gagtctttgc cgagcacggc ctcgacgacg cggcggaagg ccgccataga gttgctgcga
     4441 acgtgcagcc ccggcgccgg gtctgccgcg acgacgctca cgtcgcgctc aggggtaacg
     4501 atttggacga aggggacgcc catgtagtcg cccgtcgtgc ggacggcctt cgggttagag
     4561 cgctcggcgt tgtcgaggaa tgagcccatg cgcagattga agacgagcgg ctgcttgacg
     4621 cggaagagga gcgtcacgtc gctgccctcg cgcacgaaga ggtcgctgcc cgcggcggcc
     4681 accccctcga cgacgaggtc gtagaagggg cgcgtcagcg ggtctgtctc tatggcgagc
     4741 tggcgcttga ggcggtcgcc gacgcccgag ctcttggcct cgccgaacgc ttgattgaag
     4801 aggtgcgtgg cccataggtc tccggcgtca acggtgtcga gcagtttcgt gagcgtgcgg
     4861 aactcggcga ggtagaagtc ttccgggacg ctgcgcgcga gctgtgtgac ttcgggcctg
     4921 cggcccgcga gcatcttctc ccacgggtgg ctcttgacgg tcgggccttc gagcgccgag
     4981 acggcgaccc tttcgtcgcg ccggtagcgc ggcagcgcgg cgacgttcgc gttgcccatc
     5041 cacgggggcg gcggggcgtt gacgttaccc tgcccggcgc gagccggagg gcggctctgc
     5101 cgcgcgcgcg cgcgggcgcg cccccgcctc tgcggccggc ggcggcctcc ggtcatgttc
     5161 acgttgccgt tgaagttacc cggaggcagc gggccgttca tgttcacggc cgtcgctgaa
     5221 gggggcggcg cctcgcgcgt ccccgtagtg gcgacgcgca tggtgtcgag ctggaggctc
     5281 tcctgcacgg cgagcgcgcc ggtgaaaacg ccgaagaggt caacgtcgcg gctgcgctcg
     5341 cgcgcggtga cggggccgtc atggggtatc atggcgtcca cctgcgcggc cacctcgtcg
     5401 aagcgccccg agcggcgggc cagttgcagc gcgacgtatt gcaggtaggc gtctcgcggg
     5461 tgcagccgaa gctccgcgag cgcttcttcg agcgcgcgcg cgtgccgggc gcgctcttcg
     5521 gggccgccgc cctgcgagag ggcgcggccc gccggtatcg ccagcgcggc ggccgccagc
     5581 acccagacta ctcggagtct taaaagtcgt ttcatggcga gagccttcgt gccgaaggga
     5641 aagtgcgtgg cgcggtctaa aagtaaggga cgggccgccc cattgtgcag cacgcggggc
     5701 ggtttgcgga agggttaagc tgcgcgggaa agaaaaaggc ggcgcgcttt cttcgagcgg
     5761 aagaaagcgc gccgcctcgg aaggcttgct accggtccgt ctttacttct gcggctcgac
     5821 gaccgtgaac ttggaagagg gctggagcga ctggcccgag acgcggtcgc gtatgcggac
     5881 tgagagctcg tactcgcccg cggagaggcc gtcggtcggg agcaggcgcg cgagcgtcag
     5941 gcgctggccc gaatccgaca ggccgcgcca gtcctcggcc tgcttgaaga cctccttgcc
     6001 gtccttcgcc agcacgtact ccacgtcaac cgagggcctg agcgtcgtct ggtcaatgcc
     6061 ggcgttatag acctgcatgt aaatgccgac gtcctgcccg cggttgtact tgcccgagag
     6121 gttcgggatg accttgtagg ggccgatggt gaacatgccc gggagctggt cgttaagcgc
     6181 ctgtagcttg atggccagca cgagcgagga ggcgccgagc ttctgcggcg tgtacttcgg
     6241 cacctcgaag cctatggact tgatctgctg gacgcccgag tgtatgtcgc ggattatcag
     6301 gtcaaccttg tagttgcccg gcgcgagcgg gagcacgcgc tggtaggccg acttgcgatc
     6361 cttcatcgtc gtcagctctt cgaccgacgc ctcggtcgtc acggggtctt cgaagctcgt
     6421 cacgcggcgc cccgccacgg acgtgacgcg cccgtagatg ttgacccggg cctgctgcac
     6481 gccgcccacg tccttaaacg tcaggtcgtt gttgtcggtc tgaatggtga gcgccgtcat
     6541 cacgcgctcg tccgaggcgc ggaagaagtc aacgcgggcg tcaacgtcga gcgcgctcga
     6601 ctcgacggcg ccggtcgagg tcgtcgccag caggctcttc tccaaaacgt cgttgacctg
     6661 cggcggcttc tgcaagtccg tgtagaggat gaggcgcgag aaggggctgt cctgctcgcg
     6721 cgcgccgggg cccgtgtagc cgaagccgcc gtagccggcg acgcggtcgg ccttgttggc
     6781 gaggccgagc tgttccatca gcgtcaggcc cgcgccgggt atgtggagca tcgcgtcctt
     6841 ctcgtcgggc gagcgcgcta tgcggtactc gcccgtcccc gtcgggtcaa cgaactctat
     6901 ctcgatgccg gagccgatgc cgggcaggta gcggtagaac cagacctcga aggggtaggt
     6961 cgtcgtcgag ccgccgccgt ggtaggaggg gcgctcgtag gcgccgcccg aggggtgcgt
     7021 ctcgcgctcg tgcggcgggc cgtacatgat gtagatgcgg ccgcggtcgg tcttccagcc
     7081 cggtatgccg gaggagaagt gctggttggc gtaggcgacg cgctcgtagt gctcttcgag
     7141 gtactcgttg acctctgtgt ccgggtcggg gtcgcggcgg cgccagaagg cctcgatgaa
     7201 ctgctcgcgc tcctcgtcgg tgacgagctt cttgaaggct ttgcgctcct cgtcggtgat
     7261 gatgtaggag acgtcctcgg cgagccagtt cttgaagacg tcccgcttct cgttcctgac
     7321 cttgcgctcg cgcgacatcg ggtctcccga gtcgccggac tgcttcttat ccttctgcgc
     7381 cagcgcggcg ggcgcggccg acagggccac gccgagggcg agggccaggg agagaatacg
     7441 ctggtgacga gccatcgctt ttgaactcct gttattgctc taaagtttaa gacgcgctcg
     7501 tcgcgtcatc gggcgaaggg gacgagccga gaaggtctgc cgaaatctgt cttcactcgc
     7561 caaacgcggc gacgccggag agcccgcaac ccgctgggct aaaaccagcc atcgccgcaa
     7621 ctttcggccg aattttagag cctcgcgagt gacacagtca agatgccgcg ggggggccaa
     7681 ggggttgccc cggctggccc ctctcactcc accgtccgcg ggcgcgcgaa catccaggcg
     7741 atgaggatgg agatgaggta gagcaccgcc atgggcgcgg cgaagagcat catgttgagg
     7801 atgtcgctgg tgggcgagag cacggccgcg gcgacgagga tgacgatggt cgagatgcgc
     7861 cagtggcgca ggaggaagcg cgcgtcaatc agccctatgc gggagagcac gtaggtgacg
     7921 gcaggcatct ggaagacgaa gcccatcgcg agcattatga ggatgatgaa gtcgaagtag
     7981 tccgaggcgt tcaggaagag gcggaagtcc tgcccgagcc cgagcaggta agagacggcc
     8041 ggggggaaca gaatcttgta agcgaaggcg gccccgacga cgaacgagat ggtcgagagg
     8101 gctatgaagg gcagcgcgta gccgcgctcg tgcgggtaga gccccggcga gacgaaggcc
     8161 cagacctgcc agagcaggaa ggggagcgag aggcagatgg cgccgtagag cgagacttgc
     8221 aagtagagcg agaagggctc gatggcggtc ctgacgacga gcctgtcctc gatgccgggc
     8281 agggcgccgg gggcggccgc gaagtcaacg gggaggcgca cgcctttcgg gatgacggcc
     8341 tgcccggcta tcagggcctc gtcggtgaag aggccgagac gcccctcgcc gtcgcgcgcc
     8401 acgcgcgcct gaacggccgc gcccgccggg acgactcccg tgccgagcct cgtcgcctcc
     8461 gcgaagacgt agcggcctgc gtccccctcc ttgagcgagc cgacgggctg aatggcctcg
     8521 ccgccggtca gcccttcgag cgggacgggg cgctgcgccg cctcggccag ggcccgacgg
     8581 acggggatgg agaggaagtt gtatatgcgg tctgagacga accagcaggc gaggagcgcg
     8641 accgccagga acaggaacga gcgaatgaga cggcgccgca gctcgtccag atgctcgagg
     8701 aaggacatct gagagccggc ctgctcttcg ccgccctcgc cctcgtcatt ttccgttccc
     8761 agcagagttg aagacatcag aaggaagtca gggggcagaa gtcaggagac agaataagaa
     8821 ctcctcgggc gcgcgccgac gcttttaagc cgtcggttcg cgagcgtcgg cctccggctc
     8881 ttcgtgcgcg ggcgctgcgg cggtgtcggc ctcggcctcg gggggcgccg tcgcgccggg
     8941 cggggtgcgc gggatagtct gcgcgtcgtc gggctcggcc gccgggtgca cggcctggcc
     9001 gttgaatatg tcctctgccg tctcgccgcg cgagccttct tcgagcaggg aagtgcgcgc
     9061 ggccgccgtc tcctgctcga cgcgcggggc ggcctcctgc ctgcgctcga cctcgacctc
     9121 gtactcccaa gtgcgcttga agtcctcgga ggcgcgcttg aactcggcca tgccgcggcc
     9181 gagcttgcgc cctatctcgg gtagcttgcg cggcccgaag atgatgagcg ccacgagcgc
     9241 tatcaccatc agctcagtcg tccccagaaa ttcgaagacc agaagaacgg tcggcatgag
     9301 ctaagttcc
//
LOCUS       DASPKR010000652         2033 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_886259, whole genome shotgun sequence.
ACCESSION   DASPKR010000652 DASPKR010000000
VERSION     DASPKR010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2033)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_886259"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2033)
                     /locus_tag="VD968_17395"
     CDS             complement(<1..>2033)
                     /locus_tag="VD968_17395"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE16217.1"
                     /translation="ITDDAGLFSFPEVPAGFNYTVTPVNNNVFTFAPQSTGQLLDNAV
                     MSFTGARRSWSVSGVVRRNGSAIAGVTVELEGTGRKATTDSAGRYVINGVPAGLTYKV
                     LPSSEDYAYDPGSLTIDSLQGDTVADFNVTHFLLHGRVTDPEGRGVFGVTVNLTGTLT
                     ATAFTRDDGTYSIPVHRTGNYTITPTKEQNFYAFAPEKARLTGLDGSRHGDFTATLNT
                     SASPSYVLEYDGGQKTVDYGPFWPESIDLGHFFWEFWAMPGPGAGATYMLTDGYGGAH
                     ALLFGVSHLGTSEPGRYQFIGNIWDGQAVNFFYSDEGPAPNEWGHFAVGWDGAHIVTY
                     FNGVPVGAVRHRGTRFTPGFAQGGGRLLIGGSDHNNFVGRIAQVRGYEGSNPRGAGGE
                     PGETSVFSTFAPQTIFSVDGNLLSYFFKTAPVVGDYSKGFEGSPHPGARRGTVNGILF
                     PCDGCPKPAFVVDKTAPNFATPDNPGQPAAPVRPAAPTPAGAIVFDSFQRSNSTLALG
                     GTGGLGSTESGTAGPLAWKFDTNETPLPFGILNGRAVLLADRSSVAWVEPGAQPVGLD
                     VSAARTRGTYGSGQNTGLSFRVADADNYFFAFTENDGDDLTGPKLLTVGYYLGGERTE
                     LTSEVEIPGNWRTLRVLTYNDGRIHVLADGLLIYSTTSGLLSSASGAGLYNDRA"
BASE COUNT          317 a          652 c          713 g          351 t
ORIGIN      
        1 gcgcggtcgt tatagagccc cgcgccggag gccgaagaga gcaggccgct cgtcgtcgag
       61 tagatgagca ggccgtcagc caggacatgg attcgcccgt cgttgtatgt cagcacgcgc
      121 agcgtgcgcc agttgcccgg aatctctact tcggaagtca gctccgtcct ctcgccccca
      181 aggtagtagc cgacggtcaa aagcttcggc cccgtcaaat catcgccgtc gttctcggtg
      241 aaggcgaaga agtagttgtc ggcgtccgcg acgcggaagc tgaggcccgt gttctggccg
      301 ctgccgtatg tgccgcgagt gcgcgcggcg ctcacgtcta gcccgacagg ctgcgcgcct
      361 ggctcgaccc acgctacgct actgcggtct gcgagcagca cggcgcggcc gttgaggatg
      421 ccgaacggga gcggcgtctc attcgtgtcg aacttccacg ccagaggccc tgccgtcccc
      481 gactcggtcg agccgaggcc gccagtgccg ccgagcgcga gcgtcgagtt gctacgctgg
      541 aacgagtcga agactatggc gcccgcgggt gtaggcgcgg caggccgcac gggcgcggca
      601 ggctgccccg gattgtcggg ggtggcgaag ttcggggcgg tcttgtcaac gacgaaggcg
      661 ggcttggggc agccgtcgca cgggaagagt atgccattaa cagtcccgcg gcgcgccccg
      721 gggtgcggtg agccctcgaa gcccttcgag tagtctccga ccacgggcgc agtcttgaag
      781 aagtagctca gaaggttccc gtccaccgag aagatagtct gcggcgcgaa ggtcgagaag
      841 accgaagtct cgcccggctc gcccccggcc ccgcgcgggt tgctaccctc gtagccgcga
      901 acctgcgcga tgcggccgac gaagttgttg tggtctgagc cgcctatgag cagccggccg
      961 ccgccctgcg cgaagccggg cgtgaacctc gtgcctctgt ggcgcaccgc gcctacgggg
     1021 acgccgttga agtaggtcac gatgtgtgcg ccgtcccagc ccacggcgaa gtggccccac
     1081 tcgttgggcg cggggccttc gtcgctatag aagaagttga ccgcctgccc gtcccagatg
     1141 ttgccgatga actggtagcg gcccggctcg ctggtgccga ggtggctcac gccgaagaga
     1201 agggcgtggg cgccgccgta gccgtccgtg agcatgtagg tcgcgcccgc gcccggcccc
     1261 ggcatcgccc aaaactccca gaagaagtgg ccgaggtcaa tgctctcggg ccagaacggg
     1321 ccgtagtcaa ctgttttctg gccgccgtcg tactcgagca cgtatgacgg cgacgcgctt
     1381 gtgttgagcg tcgccgtgaa gtcgccgtgg cggctgccgt cgagccctgt gagccgcgcc
     1441 ttctcgggcg cgaaagcgta gaagttctgc tccttcgtcg gcgtgatggt gtagttgccc
     1501 gtcctgtgaa cggggatgga gtatgtgccg tcgtcgcgcg tgaaggccgt cgccgtcaga
     1561 gtcccggtga ggttcaccgt cacgccgaag acgccgcgcc cttccgggtc ggtcacgcgg
     1621 ccgtggagga ggaagtgcgt gacgttgaag tcggcgaccg tgtcgccctg gaggctgtca
     1681 atcgtgagcg agccggggtc gtaggcgtaa tcttcgctcg acggcagtac cttgtacgtt
     1741 agcccggccg gcacgccgtt aatgacgtac ctgcccgcag agtccgtcgt cgccttcctt
     1801 ccggtgcctt cgagctcgac ggtgactccc gcgatggccg agccgttgcg cctgacaacc
     1861 ccgctcacag accacgagcg gcgcgccccg gtgaagctca tcaccgcgtt gtcgagtagc
     1921 tgccccgtgc tctgcggcgc gaaggtgaac acgttgttgt tgacgggcgt gaccgtgtag
     1981 ttgaagcccg ccggcacttc ggggaaggag aagaggccgg cgtcgtccgt gat
//
LOCUS       DASPKR010000653        12860 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_105459, whole genome shotgun sequence.
ACCESSION   DASPKR010000653 DASPKR010000000
VERSION     DASPKR010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12860)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12860
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105459"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..471
                     /locus_tag="VD968_17400"
     CDS             <1..471
                     /locus_tag="VD968_17400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16218.1"
                     /translation="GRLDEDGRLYITDRKKELFKLSNGKYIAPQLVESLIKQSEYVSQ
                     VVVVGAGRKTPAALIVPDWEALASALPTPQAEEHTLRVAWSRSPEAVRLVQRDVAALT
                     SSLADYERVRRVALLPEEFSIDGGELTPTLKVKRRVVDEKYSALIDELYDGAGK"
     gene            complement(505..789)
                     /locus_tag="VD968_17405"
     CDS             complement(505..789)
                     /locus_tag="VD968_17405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16219.1"
                     /translation="MKLRTCPPAESFLPAGASAGFSVEAHLSACDFCGAEMQLLSRFP
                     PPANALPFVASPLPEPLRRLAEEVMGEPSLNRARFPESLLDAERLTLTDA"
     gene            1440..2660
                     /locus_tag="VD968_17410"
     CDS             1440..2660
                     /locus_tag="VD968_17410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16220.1"
                     /translation="MAATSADRDHHQHLNDTMASATEEHSNPRPERAASERPQRHAGG
                     WVEALRQSNVAKLWTELQRLVVNHPLVRASYSAGLLVEEGDRGSAYLDMTQELFVTLL
                     AKSRFQHYLDSGMTDSEIECEISQIELTNLLTAELRKRHPESYRLARRISTIIQSSAN
                     FRRLDRQAASDATGEEPHRRLVDRVYGLREWRDDKPRRAQAELEQRVQIIPVRQRDTR
                     MVGCTGDAQIIISNSDLEDLIVSVLEACDSPVDVRTLRSLVMSRLPVMDIYLVPIGGD
                     DSDDGRSFEPVDGRENPEQSLLRRESEREAANFVDDFLRGLHAAVRGKTKQYDRMLGV
                     LWYCYLSPAHITQLEAAARLNVSDSLVSDYRRRIEQQLRALALTEVEEARRFETALRE
                     RVMTLVCDEEGVAV"
     gene            2866..4368
                     /locus_tag="VD968_17415"
     CDS             2866..4368
                     /locus_tag="VD968_17415"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HYE16221.1"
                     /translation="MPREPQNRQLLDYEPVAPARGSLRGDDSVEGERLRTVAGEDFSG
                     AAETQPPATSRESAAAASAPPFAPLRRGHALSYAGLFLFTAVVYFRPYELIPALAPLS
                     NWLAFSIAILTLLAYVPAQLGLEGTLTVRPREVNCVLLLCLAGLLSIPLAADRGEAWE
                     TFVGYTKVVIMFVVMVNVVRTEARLRRLALLVWASSIVLSLGAVADFRAGRFETGGER
                     IAGVVGGMFGNPNDLAMHLAMMVALSFALLFSSRSALAKLVFLGGAFLMSVATVLTYS
                     RGGFLGLAAAAFVVAWKLGRRHRLAVVLGSLALVVAFLALAPGDYTTRLTSIFDKSLD
                     VHGSASARQAVLWRSVNTIIHNPVFGVGMGCFHILSIREQVSHNAYTQVGAEMGVAAL
                     LAYVMFLLAPFKRLRQVERETLGRRRSRDYYWAVGLQASLVAYMVSSFFGSVAYLWYI
                     YYLVGFGYCFHRLYEAREAEARAAGEAKAGDRPSHSDWDEGAALAGAARA"
     gene            4385..7222
                     /locus_tag="VD968_17420"
     CDS             4385..7222
                     /locus_tag="VD968_17420"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE16222.1"
                     /translation="MFETAAKICFWLGAAALAYAYAGYPVLVAALGRLRPRRVARRED
                     FLPSVSVVITAYNEERDLAAKLENTLALDYPSDKLEIIVASDCSSDRTDEIARSFAPR
                     GVRLHRQAERLGKTAAQNAAVELARGEVILFSDATTLYRPDVLRVMAPNFADPSVGCV
                     AGRLIYVDPAGTGTGSGARSYWGYESFIKRQESRACSLIGVSGCLYAVRRSAYVPLYN
                     EACSDFIIATKMVEQRLRAVYEPAAVCTEETNRRSDKELRMRVRVITQTYTDLWRHRH
                     MLNPLRSGFYGVQLFSHKVLRYLVPVLLLLVFASSLALARTHWLYALAAAAQGCFYGA
                     ALASWALESAGLRSRLLSLPQYFVLANLASLIAAYKFARGERYARWEPIREPPAAGDA
                     GVDDGDADATAHIPGAGDATAAAGVGDPVAGGQSGGAPEPAAVTPASEGQSLTARTFW
                     LAAAKTLAYAFAFSLPVLLTRALSQTEYGLFKQVFLVVGTATVVLPLGFGMSAYYYLP
                     RETDERRRGQVILNILLFSAAVGAAACLALVLKPELLAMVFGDEDMAAYAPLVGFVIL
                     LWLLSSFLEIVVVANQETRLSTVFIVCSPLAKTALMFGAAAAFGTVRSLIYAALAQGL
                     LQTAALLVYLRARFPRFWRSFDWAMLRAQFAYAAPLGAAGLLYTLLMDLHNYVVSGRF
                     DARTFAIYSIGVAQLPLVSVLRESVSSVMLPQVSRMQKRGEGRGIVYLLSRAMRKLSA
                     FYLPIYAFLMVCGREFIAFLFTPAYLDSWPVFAVNLTLLPLSVLEFDSVIRAYAEHRY
                     FMLKLRAVLFALLLVALWFGVLRFGVLGAIGVVVGINLLERVATALKFGRVIGARAAD
                     ARLLKDVGKVALAAAAAAGAAALTRQALAGASPFAVLAACGAVFGAAYLAGLLLLGVP
                     EPEEREAVRRQAARLWRRLTPRGGALAVKEN"
     gene            7224..9164
                     /gene="asnB"
                     /locus_tag="VD968_17425"
     CDS             7224..9164
                     /gene="asnB"
                     /locus_tag="VD968_17425"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HYE16223.1"
                     /translation="MCGIAGFVEAEGARPCDERAALLDRMCRVIEHRGPDEQGALVEG
                     GAGLGMRRLSIIDLAGGHQPMKGCDPALSLVFNGEIYNYRELKSELESLGHCFKTNSD
                     TETIVHAYEEFGRDCVERLRGMFAFALWDASRRRLLLARDRAGKKPLYYAHLPSGALV
                     FGSELKSLLLHPEVERRVSLEALDAYVSFGYVPDPLSIFEGVSKLPPGHTLTFEGGRP
                     DVRAYWDFDFEPDSPPRGEEEYVEELRALLEEAVRIRLVSDVPLGAFLSGGVDSSAVV
                     AMMARNSARPVKTFSIGFTEDSYDELKFARAAARRFGTDHHEFVVTPDVCRVVDELVW
                     HFDEPFADSSAIPTYAVSKLAREHVKVVLSGDGGDELFAGYTRYAIDRRRRPFERAPR
                     ALREGVMLPLSRRLPHGAWGRNYLHDNAQDAVGRYISSVSVFTDLGKLSLYSSDALCA
                     LRDSGRAAARFREHAGRARTGDPLDALLYLDSKTYLPGDILTKVDRMSMAVSLEARAP
                     LLDHKLIEFAVRVPASFKMRGAETKYIFKRAVRGLVPDEILDRPKQGFGVPVQEWINQ
                     ELRDYIRDVLGDARTRSRGYFDPSYLDLLFDEHGRGRRDHSTKLWALFTLELWHRSFC
                     DAGADIERPRCAREPETAAVVS"
     gene            9185..10366
                     /locus_tag="VD968_17430"
     CDS             9185..10366
                     /locus_tag="VD968_17430"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYE16224.1"
                     /translation="MSFNALQLVGSFHQGGSERQAVQLARLLAERGGCRVRVATLDAS
                     GVLGAEVESLGLGEVPEYRLTSFYDANAVRQLRRFARFLRAERVDVVHTHDFYTNVFG
                     MAGAWLAGVPARVASKRETEGMRTAAQERAERAAFRLAHAVTVNAGAVRERLVAGGVP
                     GGKIKVVHNGIDAARVAPPAGMSRAEARAAVGLPREEGLRFVTIVANLRHEVKDHSMF
                     LRAARRVLAEVPEARFVVAGEGELEAPLRAMAVEMGVAEAVVFTGRCERVAELLFASD
                     VCALSSRAEGFSNALLEYMAAGRPSVVTDVGGAREAVVEGETGFVVAPGDDERMAERI
                     VHLLRSPAEARAMGERARDRVAREFSCEIRLEKTLALYAGLLARRGRERAGRGREVTA
                     C"
     gene            10360..10842
                     /locus_tag="VD968_17435"
     CDS             10360..10842
                     /locus_tag="VD968_17435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16225.1"
                     /translation="MLKREVLGVFHNPWRDDYDPRRSIGELYRRAVWLKANPRSETYM
                     RALFKERYPEGRFVSTAEDWKARLASADTVVLLYPDSTGLGFSRVEREAFAGKKEWAT
                     VRALNGRRRDFVLSRRVLRQLRRRRFLEVTMLGEAAVVVPFVVVTPFFVLSDFVRGRR
                     "
     gene            10839..11729
                     /locus_tag="VD968_17440"
     CDS             10839..11729
                     /locus_tag="VD968_17440"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE16226.1"
                     /translation="MSTRQDVSDVRRWWAENPMTYGEAHGQTAYADGEYEFGSPAFFD
                     RLDREFYSWNKPLHDSRPFGRLFPYERYARGRVLEVGCGMGTMAMNWARAGARLVAVD
                     LNETAVEMTRRRFRMLGLEGDIRQADARGLPFADSEFDYAYSFGVLHHSPNLEESVAE
                     LMRALRPGGGFGVMLYNRRSVLYRYTVEYLQGFLHYENEFLGPLELASRYGDGDTAEG
                     NPHTWPITTEEALSLFGRHSADVRVRRLGTELDQIFRQMLPLVGRLVPRAARKAWARR
                     YGWSLWIEGTKRSEVEEALR"
     gene            11735..>12860
                     /locus_tag="VD968_17445"
     CDS             11735..>12860
                     /locus_tag="VD968_17445"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HYE16227.1"
                     /translation="MSKRKVLFVELNENTWDLIDPLIERGKLPTFARLKREGAWGEPV
                     SVDMPPQLDPWITWTTVYTGRTQAEHNLFFLQQPPETIRARRVWEICDDAGLSVGVYG
                     SLCSWPPRAVRGFYVPDTFAPDAATHPEHLSPVQTLNLTYTRSVRLPSDEDGLAFKAR
                     LGAKLVGLGLSARTMARVAAQLARERLDPSCRWRRVALQPAVNFDFFRRLYRRHRPDF
                     ASFHTNHVAHYMHTYWKAMRPDLFPQETSPEEVRAYGGAIEHGYRAADELLRGMMSLL
                     DEETVLVVASSMGQKPFVSDLKKGKRIGQLRSLDRLVEILGEGGRVRTLSTMSDQFNL
                     YPDSPETMRRVVAALRSAYVDDPAQPMFFVTTLEDSLTINL"
BASE COUNT         1890 a         4476 c         4385 g         2109 t
ORIGIN      
        1 gggcgcttgg acgaggacgg ccggctctac atcaccgacc gcaagaagga gctctttaag
       61 ctctcgaacg gtaagtacat cgcgccgcag ctggtcgaga gcctcatcaa gcagagcgag
      121 tacgtgagcc aggtggtcgt cgtcggcgcg ggccgaaaga ccccggccgc gctcatcgtg
      181 ccggactggg aggcgctcgc ctcggcgctc cccaccccgc aggcggagga gcacaccctc
      241 cgcgtcgcct ggagccggag ccccgaggcc gtccgcctcg tacagcgcga cgtggcggcc
      301 ctgacctctt cgctagccga ctacgagcgc gtgaggcgcg tggcgctgct gccagaagag
      361 ttctcgattg acggcgggga gctgacgccc acgctcaagg tcaagcgtcg cgtcgtggac
      421 gaaaagtaca gcgcgttgat agatgagctc tacgacgggg cgggcaagta gtagcttccg
      481 gccagttaac gcgcggggcg cgcgtcaggc gtccgtgagc gtcaggcgct cggcatcaag
      541 gagcgattcg gggaagcgcg cgcggttgag cgaaggctcg cccatgacct cttcggccag
      601 gcggcgcagc ggctcgggca ggggggaggc gacgaagggg agagcgttcg ccggcggcgg
      661 gaagcgggag agcaactgca tctccgcgcc gcagaagtcg caggccgaca ggtgcgcctc
      721 gaccgagaag ccggcgctcg cgcctgcggg cagaaaactc tcggccggcg ggcacgtccg
      781 gagtttcatg aatttggctg tgctcgaaga acccattgtc cctcctcgcg gtctctctcg
      841 gtgagttggc gagtcgcggc ggctcgcgcg cggagcgctg tcgcttcaaa ggcaaggcac
      901 agcacggtgt tcaggccagg gcaagaggtg tcacgcgcgg cggggtcgcg gccagccgtt
      961 aatccctcgt ttctggcgct ccgctcattc acgggaggct acagtgccaa tgccacggaa
     1021 cttccacact tccgacggct tttcggggcg cgccgcgccc cctttctcac cttttttcaa
     1081 cggcttccgc cgcgtgtaaa aaggtgttgc tcaattccgg gattactgct accatctgaa
     1141 agtgttcggg gcgcgagggc gcaccacaga cgtgcggccc gagccccgtg ccccttcacg
     1201 gtggccgcgc acgaatccca ccgcggcttc gaccggcgcg ggtccccctg caaggtcgtc
     1261 attcccaact agagagcttg ccgagcgcag gcgccccgcc cacggggcgg agggtttttc
     1321 ggcccgtgag ccccgggcgc cccggccagt cccttcggct tccccgacct ctcctcatca
     1381 cgggccgccg cagccccgca caccttcggc cttgctcctg acggacgaat accagtaaca
     1441 tggctgccac atccgccgac cgagatcacc accaacacct aaacgacacg atggcgagcg
     1501 caacggaaga acattcgaac ccccggccgg agcgcgccgc tagcgagcgc ccgcagcggc
     1561 acgcgggggg ctgggtcgag gccctgcgcc agtcaaacgt cgccaagctc tggacggagc
     1621 tccaacgcct cgtcgtcaac cacccgctcg tgcgcgcctc ctacagcgcc ggcctgttgg
     1681 tcgaggaggg cgaccgcggg agcgcctacc tggacatgac gcaggagctt ttcgtcacgc
     1741 tcctcgccaa gtcgcgcttc cagcactacc tcgactccgg catgacggac tccgagatcg
     1801 agtgcgagat aagccagata gagcttacta accttctgac ggcggagctt cgcaagcgcc
     1861 accccgaatc ttaccgcctg gcacgccgca tctccacgat catccagtcg agcgcgaact
     1921 tccgccggct cgaccggcag gcggcctccg acgcgacggg cgaggagccg caccgccgcc
     1981 tagttgaccg cgtctatggc ctgagggagt ggagagacga caagccgcgg cgcgcgcagg
     2041 cggaacttga gcagcgcgtg cagataatcc cggtgcgcca gcgcgacacg cgcatggtcg
     2101 gctgcacggg cgacgcgcag ataatcatca gcaactcaga cctcgaagac ctgatagtct
     2161 ccgtcctaga agcctgcgac tcgccggttg acgtgcggac gctccggagc ctcgtcatgt
     2221 cgcgcctgcc cgtcatggac atctacctcg tccccatcgg cggcgacgac tccgacgacg
     2281 ggcgctcgtt cgagcccgtg gacgggcgcg agaaccccga gcagtcgctg ctgcggcgcg
     2341 agtcggagcg cgaggccgcg aacttcgttg acgacttcct gcgcggcctg cacgcggccg
     2401 tgcgcgggaa gaccaagcag tacgaccgca tgctcggcgt gctgtggtat tgttacctga
     2461 gcccggcgca cataacgcag ctcgaggccg ccgcgcgcct gaacgtctcc gactcgctcg
     2521 tctccgacta ccgacggcgc atcgagcagc agctccgcgc ccttgcgctc acggaggtcg
     2581 aggaggcccg gcggttcgag accgcgctcc gcgagcgcgt catgacgctc gtttgcgacg
     2641 aggagggcgt ggccgtctag gcggccgggc cgaaagagtt tctggcctgc cgcccctccc
     2701 aaaagggagg gcgcggcccg tacggtcacc ggaggcggga ttgccccccg ccccggtgtc
     2761 tgtctaatta gggcgggaaa gtttacggaa gcggaagggc gcccccgaca ttccgagcgc
     2821 ggcggccgtc cccgcaacac gagtcacggg ggagggccgc aagcagtgcc gcgagagccg
     2881 caaaaccgcc agctcctcga ctacgagccg gtagccccgg cgcgcggctc gctgcgcggg
     2941 gacgattctg tcgagggcga gcggctgcgc acggtcgcgg gcgaagattt cagcggggcg
     3001 gcagagacgc aaccgcccgc cacttcgcgc gagagcgcgg ccgccgcgag cgcgccgccg
     3061 ttcgcaccgc tcaggcgcgg ccacgccctg agctacgccg gcctcttcct cttcacggct
     3121 gtcgtctatt tccgccctta cgagctgata ccggcgctcg cgccgctctc gaactggctc
     3181 gccttctcca tagctattct gacgcttctg gcctacgtgc cggcgcagct cggcctcgaa
     3241 ggcacgctga ccgttcgccc gcgcgaggtc aactgcgtgc tgctcctgtg ccttgcgggc
     3301 ttgctctcga taccgctcgc ggccgaccgc ggcgaggcgt gggagacctt cgtgggctac
     3361 acgaaggtcg tcatcatgtt cgtcgtcatg gtgaacgtgg tgaggactga ggcgcgcctg
     3421 cggcggctgg cgcttctggt ctgggcgtcg agcatcgtcc tgagcctcgg cgcggtggcc
     3481 gacttccgcg ccggccgctt cgagacgggc ggcgagcgca tcgccggcgt cgtcggcggc
     3541 atgttcggca acccgaacga cctcgccatg cacctggcca tgatggtggc gctctcgttc
     3601 gcgctgctct tctcatcgcg ctccgccctg gcgaagcttg tctttctggg cggcgcgttc
     3661 ctgatgtcgg tagccaccgt cctcacgtac tcgcgcggcg gcttcctggg cttggcggcc
     3721 gcggccttcg tcgtggcgtg gaagctgggc cgtcgtcaca ggctggcggt cgtcctcggc
     3781 tcgctcgccc tcgtagtcgc cttcctggcg ctcgcgcccg gcgactacac cacgcggctc
     3841 acctccatct tcgacaagtc gctcgacgtg cacggctcgg cgagcgcacg gcaggccgtg
     3901 ctctggcgct cggttaacac gatcatccac aacccggtct tcggcgtcgg gatgggctgc
     3961 ttccacatac tctccatacg cgagcaggtg agccacaacg cctacacaca ggtcggcgcg
     4021 gagatgggcg tggcggcgct gctcgcctac gtgatgttcc tgctcgcgcc tttcaagcgg
     4081 ctgcggcagg tcgagcgcga gacgctcggg cgccgacgct cgcgcgacta ctactgggcc
     4141 gtcggcctgc aggcgagcct cgttgcctac atggttagca gtttcttcgg gtcggtcgct
     4201 tacctgtggt acatctacta cctcgtcggc ttcggctact gcttccacag gctctacgag
     4261 gcgcgcgagg ccgaggcgag ggctgccgga gaggcgaagg ctggcgaccg gccctcacat
     4321 agcgactggg acgaaggggc ggcgctcgcg ggcgcagcgc gcgcttgagg cggggaaggg
     4381 gcggatgttc gagacggccg cgaaaatctg tttctggctt ggcgccgcgg cgctcgccta
     4441 cgcatacgcc ggctaccccg tgctcgtggc ggcgctcggg cggctgcggc cccgccgggt
     4501 cgcgcgccgc gaagactttc tgccttcggt cagcgtcgtc atcacggcct acaacgagga
     4561 gcgcgacctc gcggcgaagc tggagaacac gctcgcgctc gactacccct cggacaaact
     4621 cgaaatcatt gtcgcctccg actgctcctc agaccgcacg gacgagatag cgcgctcctt
     4681 cgcgccgcgc ggcgtccgcc tgcacaggca ggcggagcgg ctgggcaaga ccgcggccca
     4741 gaacgccgcc gtagagctcg cgcgcggaga ggtcatactc ttctccgacg ccaccaccct
     4801 ctaccggccg gacgtgctgc gcgtgatggc cccgaacttc gccgacccgt cggttggctg
     4861 cgtcgccggc cggctgatct acgttgaccc tgcggggacg gggacgggca gcggcgctcg
     4921 ctcctactgg ggctacgagt cctttatcaa gcggcaggag agccgcgcct gctcgctcat
     4981 aggcgtctcg ggctgcctct acgccgtgcg ccgctcggcc tacgtcccgc tctacaacga
     5041 ggcgtgcagc gacttcatca tcgcgaccaa gatggtcgag cagcgcttgc gcgccgtcta
     5101 tgagcccgcg gccgtctgca cggaggagac gaaccgccgc tccgacaaag agctgcggat
     5161 gcgcgtgcgc gtcatcacgc agacctacac cgacctctgg cgccaccgcc acatgctcaa
     5221 cccccttcgt agcggcttct acggcgtgca gctcttctcg cacaaggttc tgcgctacct
     5281 cgtccccgtc cttctgctcc tcgtattcgc gtcgtcgctc gcgctcgcgc gcacgcactg
     5341 gctctacgcg ctggcggccg ccgcgcaagg ctgcttctac ggcgcggcgc tcgcctcctg
     5401 ggcgctagag agcgcggggc ttcggagccg cctgctctcg ctcccgcagt acttcgtgct
     5461 cgcgaacctc gcgtcgttga ttgccgccta caagttcgcg cgcggcgagc gctacgcgcg
     5521 ctgggagcct atacgcgagc cgccggccgc tggcgacgcc ggagttgatg acggcgacgc
     5581 cgacgccacg gctcacatac cgggcgcggg cgacgcgacc gcggcggcgg gcgtaggcga
     5641 ccccgtggcg ggcggccaga gcggcggcgc gcccgagccg gccgccgtga cgcctgcaag
     5701 cgaaggccag tccttaacgg cccgcacctt ctggctcgcg gcggcgaaga cgctcgccta
     5761 cgccttcgcg ttctcccttc ccgtgctgct cacgcgcgcg ctcagccaga cggagtacgg
     5821 cctcttcaag caggtcttcc tcgtcgtcgg cacggcgacg gtggtgctcc cgctcggctt
     5881 cggcatgagc gcctactact acctgccgcg cgagacggac gagcggcggc gcgggcaggt
     5941 gatcctgaac atactgctct tcagcgcggc cgtcggcgcc gcagcgtgcc tcgcgctcgt
     6001 gctgaagccg gagctgctcg cgatggtctt cggcgacgag gacatggcgg cttacgcccc
     6061 cctcgtcggc ttcgtgatac ttctctggct cttgtcgtca ttcctcgaga tagtcgtggt
     6121 cgcgaaccag gagacgaggc tgtccaccgt cttcatagtc tgctcgcctc tggccaagac
     6181 ggctctcatg ttcggggcgg cagccgcctt cggcacggtg cgctcgctca tctacgcggc
     6241 gctcgcgcag ggcctgttgc agacggcggc gctgctcgtt tacctgcgcg cgcgcttccc
     6301 ccgtttctgg cgcagcttcg actgggcgat gctgcgcgcg cagttcgcgt acgccgcgcc
     6361 gttgggggcc gccgggctcc tgtacactct tttgatggac ttgcataact acgtcgtgtc
     6421 gggccgcttc gacgccagga cgttcgccat ctactcaatc ggcgtcgcgc agctcccgct
     6481 cgtgagcgtg ctgcgcgagt cagtaagctc cgtcatgctg ccgcaggtga gccgcatgca
     6541 gaagcgcggc gaggggcgcg ggatcgtcta tctgctctcg cgcgcgatgc gcaagctctc
     6601 ggccttttac ctgcccatct acgcgttcct gatggtgtgc gggcgcgagt ttatcgcgtt
     6661 cctcttcacg cccgcctacc tcgatagctg gcccgtcttc gccgtgaacc tcacgctgct
     6721 gccgctctcc gttctggagt tcgactcggt catacgcgca tacgccgagc accgctactt
     6781 catgctgaag ttgagggccg tgctgttcgc gctgctgctc gtcgcgctct ggttcggcgt
     6841 gctgcgcttc ggggtgctgg gcgcgatagg cgtagtcgtc ggcataaatc ttttggagcg
     6901 cgtggcgacg gccctcaagt tcgggcgcgt gataggcgcg cgcgccgcgg acgcgcggct
     6961 cctcaaggac gtcgggaagg tcgcgctcgc ggccgccgcg gcggccgggg cggccgcgct
     7021 caccaggcag gcgctcgcgg gcgcttcgcc cttcgcggtg ctggcggcgt gcggcgccgt
     7081 cttcggcgcg gcgtacctcg cgggccttct gcttctgggc gtccccgagc cggaagagcg
     7141 cgaggccgtc aggcgtcagg ccgcgcgact gtggcggcgg ctcacgccgc gcggcggcgc
     7201 gctcgccgtc aaggagaact agcatgtgcg gcatcgccgg tttcgtcgag gcggagggcg
     7261 cgcgcccgtg tgacgagcgc gcggcgctgc tcgaccgcat gtgccgcgtc atcgagcacc
     7321 gcggccccga cgagcagggg gcgctcgtcg agggcggcgc ggggctcggc atgcggcggc
     7381 tctcgatcat tgacctcgcg ggcggccacc agcccatgaa gggctgcgac cccgcgctct
     7441 cgctcgtctt caacggcgag atttacaact accgcgagtt gaagtcggag cttgagtcgc
     7501 tcggccactg tttcaagacc aactccgaca ccgaaacaat cgtccacgcc tacgaggagt
     7561 tcggccgcga ttgcgtagag cgcctccgcg gcatgttcgc cttcgcgctg tgggacgcct
     7621 cccgccgccg cctgctcctc gcgcgcgacc gcgccggcaa gaagcccctc tactacgcgc
     7681 acctgccctc gggcgcgctc gtcttcggct cggagcttaa gtcgctcctg ctgcacccgg
     7741 aggtcgagcg gcgcgtgagc ctcgaagccc tagacgccta cgtctctttc ggctacgtcc
     7801 ccgacccgct ctcgatattc gagggcgtct cgaagctccc gcccggccac acgctcacgt
     7861 tcgagggcgg gcgcccggac gttcgcgcct actgggattt cgacttcgag cccgactcgc
     7921 cgccgcgcgg cgaggaggag tacgtcgaag agcttcgcgc cttgctcgaa gaggccgtgc
     7981 ggatccggct cgtctcggac gtgccgctcg gcgccttcct ctcgggcggc gtggactcga
     8041 gcgccgtcgt cgccatgatg gcgcgcaaca gcgcgcgccc cgtcaagacc ttctcgatag
     8101 gtttcaccga ggacagctac gacgagctga agttcgcgcg cgcggccgcc cgccgcttcg
     8161 gcaccgacca ccacgagttc gtcgtcaccc cggacgtgtg ccgcgtcgtt gacgagctgg
     8221 tctggcactt cgacgagccg ttcgcggact cctccgccat accgacctac gcggtctcta
     8281 agctcgcgcg cgagcacgtc aaggtcgtgc tctcgggcga cgggggcgac gagcttttcg
     8341 cgggctacac gcgctacgcc atagaccgcc gccgccgccc cttcgagcga gcgccgcgcg
     8401 ccctgcgcga gggggtgatg ctgcccctca gccgccgact gccgcacggc gcgtggggcc
     8461 gcaactacct gcacgacaac gcgcaggacg ccgtgggccg ctacatcagc agcgtctccg
     8521 tcttcactga cctcggcaaa ctttcgctct actcgtccga cgcgctctgc gcgctgcgcg
     8581 actcgggaag ggcggcggct cgcttccgcg agcacgcagg gcgcgcgcgc acgggcgacc
     8641 cgttagacgc cctgctctac ctcgacagca agacgtacct gccgggcgac atcctgacca
     8701 aagttgaccg catgagcatg gccgtctcgc tggaagcccg cgcgcccctg ctcgaccaca
     8761 agctcatcga gttcgccgtg cgcgtccccg cgtctttcaa gatgcgcggg gcggagacga
     8821 agtacatatt caagcgggcc gttcgcgggc tcgtccccga cgagatactc gacaggccga
     8881 agcagggctt cggcgtcccc gtgcaggagt ggataaacca ggagttgcgc gactacatac
     8941 gcgacgtgct cggcgacgcg cgtacgcgct cgcgcggcta cttcgacccc tcgtacctcg
     9001 acctcctctt cgacgagcac ggccgcggcc gccgcgacca ctcgacgaag ctctgggcgc
     9061 tcttcacgct ggagctttgg cacaggagct tctgcgacgc gggcgccgac atagagcggc
     9121 cgcgctgcgc gcgcgagccc gagacggccg ccgtcgtttc gtgatgggga gcaggggaga
     9181 ccttttgagc ttcaacgcgc tacaactcgt cggcagcttc caccagggcg gctctgagcg
     9241 gcaggccgtg cagctggcgc gcctgctggc cgagcgcggc gggtgccgcg tgcgcgtcgc
     9301 cacgctcgac gcgtcgggcg tgctgggcgc cgaggtcgaa tcgctgggcc tgggcgaggt
     9361 tcccgagtac cgcctgacga gcttctacga cgcgaacgcc gtgcggcaac ttcgccgctt
     9421 cgcgcgcttc ctccgcgccg agcgcgttga cgtggttcac acgcacgact tctacacgaa
     9481 cgtcttcggc atggcgggcg cctggttggc cggcgtgccg gcgcgcgtcg cctcgaagcg
     9541 cgagaccgaa gggatgagga cggcggcgca ggagcgggcc gagcgcgcgg ccttccgcct
     9601 cgcgcacgcc gtcaccgtca acgccggggc cgtgcgcgag cgcctggtcg cgggcggggt
     9661 gccgggcggg aagattaagg tagttcacaa cggcattgac gccgcccgcg tcgcgccgcc
     9721 ggcgggcatg agccgcgcgg aggcgcgcgc ggccgtaggg ctgccgcgcg aggagggcct
     9781 gcgcttcgtc accatcgtcg cgaacctccg gcacgaagtg aaagaccatt ccatgttcct
     9841 gcgcgcggcg cggcgcgtgc tcgccgaggt gccggaggcg cgcttcgtag tggcgggcga
     9901 gggcgagttg gaagcgcctt tgcgcgcgat ggccgtggag atgggggtgg ccgaagccgt
     9961 cgtcttcacg gggcgctgcg agcgcgtggc ggagcttctg ttcgcctcgg acgtttgcgc
    10021 cttgagctct cgggccgagg ggttctcgaa cgctttgctt gagtacatgg cggcggggcg
    10081 gccttcggtc gtgacggacg tgggcggagc gcgagaggcc gtcgtcgagg gggagaccgg
    10141 cttcgtcgtc gcgccgggcg acgacgaaag gatggccgag cgaatagtcc acctgctgcg
    10201 ctcgcccgcg gaggcgcgcg cgatgggcga gagggcgcgc gacagagtgg cacgcgagtt
    10261 ctcgtgcgaa atcaggttag agaagacgct cgcgctatac gcggggctgc tcgcgcgccg
    10321 cggccgggag cgcgccgggc gcgggaggga ggtgacggct tgctgaagag agaagtgctg
    10381 ggcgtctttc ataacccgtg gcgcgacgac tacgacccgc gccgctctat cggggaactg
    10441 taccgccgcg ccgtctggct caaggccaac ccgcgctccg aaacttacat gcgcgcgctc
    10501 ttcaaggagc gctaccccga gggccgcttc gtaagcacgg ccgaggactg gaaggcgcgg
    10561 ctcgcgtcgg ccgacacggt cgtgctgctc tacccggact cgacgggctt gggcttctcc
    10621 cgagtcgagc gcgaggcttt cgcgggcaag aaggagtggg cgaccgtccg ggctctcaac
    10681 ggccggaggc gcgacttcgt cctgagccgc cgcgtgctgc ggcagttgag gcgccgccgc
    10741 ttcctcgaag tgacgatgct gggcgaggcg gcggtcgtcg tccccttcgt cgtcgtcacg
    10801 cctttcttcg tcctgagtga tttcgtgagg gggcgcagat gagcacacgg caggacgttt
    10861 cggacgtgcg gcgctggtgg gccgagaacc cgatgaccta cggcgaggcc cacgggcaga
    10921 cggcctacgc cgacggcgag tacgagttcg gctcgcccgc cttcttcgac cgtctcgacc
    10981 gcgagttcta cagttggaac aagcccctgc acgactcgcg ccccttcggc cggctcttcc
    11041 cctacgagcg ctacgcgcgc gggcgcgtgc tcgaagtcgg ctgcggtatg gggacgatgg
    11101 ctatgaactg ggcgagggcg ggcgcgcgcc tcgtcgccgt tgacttaaac gagacggccg
    11161 tcgagatgac gcgccgccgc ttccgaatgc tcggcctcga aggcgacatc cggcaggcgg
    11221 acgcccgcgg gctcccgttc gcggattccg agttcgatta cgcgtattcg ttcggcgtgc
    11281 tgcaccactc cccgaacctg gaagagtccg tggcggagtt gatgcgcgcc ctgcggccgg
    11341 gcgggggctt cggcgtgatg ctctacaacc gtcgctctgt gctctaccgc tacacggtcg
    11401 agtacctgca aggcttcctg cactacgaga acgagttcct cgggcctctg gagctcgcga
    11461 gccgctacgg cgacggcgac acggccgagg gcaacccgca cacctggcct ataacgaccg
    11521 aggaagcgct ctcgctcttc gggcgccaca gcgcggacgt tcgcgtgcgt aggctcggga
    11581 cggagctcga ccagattttc cggcagatgc tccccttagt cggccggctc gtgccgcgcg
    11641 cggcgcgaaa ggcctgggcg cgccgctacg gctggagcct ctggatagag gggacgaagc
    11701 ggtcggaagt ggaggaggcg ctgaggtaat tagtatgtct aaacgcaaag tcctgttcgt
    11761 cgagttgaac gagaacacgt gggacttgat agacccgctg atagagcggg ggaagctccc
    11821 gacgtttgcg cgcctcaagc gcgagggcgc gtggggcgag cccgtgagcg ttgacatgcc
    11881 gccgcagcta gacccgtgga taacgtggac gaccgtctat acgggccgca cgcaggccga
    11941 gcacaacctc ttcttcctac agcagccgcc cgagacgatc cgcgcgcgcc gcgtctggga
    12001 gatatgcgac gacgcgggcc tttccgtcgg agtttacggg agcctctgct cctggccgcc
    12061 gcgcgccgtg cggggcttct acgtccccga cacgttcgcg cccgacgcgg cgacgcaccc
    12121 cgaacattta agccccgtgc agacgctgaa cctgacctac acgcgctcgg tcaggctccc
    12181 gtcggacgag gacgggctgg cgtttaaggc gaggctcggc gcgaagctgg tggggctcgg
    12241 cctgagcgca cggacgatgg cgcgcgtcgc ggcgcagctc gcgcgcgagc gcctcgaccc
    12301 ttcctgccgc tggcgccgcg tcgccttgca gccggccgtc aacttcgact tcttccgccg
    12361 gctctaccgc cgccaccgcc ccgacttcgc ctcgttccac accaaccacg tcgcgcacta
    12421 catgcacacc tactggaagg cgatgcggcc cgacctcttc ccgcaggaga cgagcccgga
    12481 ggaggttcgc gcctacggcg gggcgataga gcacggctac cgcgcggccg acgagctcct
    12541 gcgcggcatg atgagtctgc tagacgaaga gacggtgctc gtagtcgctt ccagcatggg
    12601 gcagaagccc ttcgtgagcg acctgaagaa gggaaagcgc atcggccaac tgcgctcgct
    12661 agaccgcctc gtagagattc tcggcgaggg agggcgcgtg cgcacgctct cgaccatgtc
    12721 cgaccagttc aacctctacc ccgactcgcc ggagactatg cggagggtcg tggcggcgct
    12781 gcgctcggcc tacgttgacg accccgctca gccgatgttc ttcgtcacga cgctcgaaga
    12841 cagcctgacc atcaacctct
//
LOCUS       DASPKR010000654         4830 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_235479, whole genome shotgun sequence.
ACCESSION   DASPKR010000654 DASPKR010000000
VERSION     DASPKR010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4830)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4830
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235479"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..890)
                     /locus_tag="VD968_17450"
     CDS             complement(<1..890)
                     /locus_tag="VD968_17450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16228.1"
                     /translation="MNKERLGLDSDLPELLRQEQTPASRLIRLGLVGALGASVALCQT
                     GAPRAQQRWKEPEVKVTGVSVSGSVVSISADGPLTRAQTFQTPDGVFHVVVVNGKSEL
                     QGGAPRGVKLQRISNSLELTVPVRPGASVTVQPRGNRLDLVVSGGQGGALNVENFETG
                     RQAEEGGEEERGGRRPGPRAASRGTAATTRPREMPSQASRAESPQPSGRHDKKERGTQ
                     TDAEHAAGGAPKGATQPAEQPVAAGAGGDAPPQQEASAVARASEPEVLIAPAQAAADE
                     GVSVGSLLFSLPSLLGALGLA"
     gene            complement(1063..1842)
                     /locus_tag="VD968_17455"
     CDS             complement(1063..1842)
                     /locus_tag="VD968_17455"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYE16229.1"
                     /translation="MITKSAPNGARTKDADEDKPEVGDRRLNLLVIEDDEKILEAIKE
                     YFSRAGYSVQTAEDGLSGVQAALNDRPDAIVLDLMLPKMDGLAVCRELREKAPYLPIL
                     MLTAKDDVVDKVLGLEMGADDYITKPFSLRELEARIKSVMRRVRAAARAEGAGEDAPI
                     IRGRLRIDPAKREVTVGDRQVELTPKEFELLRLFASNPGRVFPRKYLLEKIWDYSYEG
                     YDRTIDSHINRLRAKIEDNPENPQMVLTVWGIGYKFSDEQR"
     gene            2202..2678
                     /locus_tag="VD968_17460"
     CDS             2202..2678
                     /locus_tag="VD968_17460"
                     /inference="COORDINATES: protein motif:HMM:NF016840.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HYE16230.1"
                     /translation="MNREERDALIAKYKAGYDEVAASLEGLGPDEMTARPIEGKWSAR
                     EIVHHLADSETNSAIRLRKLLAEESPQIQGYDQDFYAARLRYNERDTAPALEAFRAAR
                     STTAQILDLMTDDDWSREGTHSESGRYTAEDWLRIYAAHAHGHAAQIRRLREALGK"
     gene            2835..3734
                     /locus_tag="VD968_17465"
     CDS             2835..3734
                     /locus_tag="VD968_17465"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF010568.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HYE16231.1"
                     /translation="MNAAQTVSETELPGLKLIRRGKVRDVYEVDEERLLIVATDRISA
                     FDCILPTRVSRKGEVLTALSRFWFERLAHVSPHHMLTTDLGEMADAVRAHGEVLRGRS
                     MLVRRTEVFPVECVVRGYLAGSGWKDYRATGETSGRRLPEGLRESDKLPEPIFTPATK
                     AESGHDENISEERMGEIVGAEVTAQLRDTSLALYREAEAYARERGIIIADTKFEFGRD
                     SEGRVILIDEALTPDSSRFWPADGYNPGGPQPSFDKQFVRDYLETLAWDKRPPAPPLP
                     PEVARATTARYLEAYRLLTGREL"
     gene            3844..4101
                     /locus_tag="VD968_17470"
     CDS             3844..4101
                     /locus_tag="VD968_17470"
                     /inference="COORDINATES: protein motif:HMM:NF014950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYE16232.1"
                     /translation="MRARLEALIDEMLDGQIMLDEALTEFEKLYIQKALARNKEHLSR
                     TAVSLGIHRNTLSKRVAAYRTQERPPRPQKNSRKPAARGKR"
     gene            4318..4647
                     /gene="groES"
                     /locus_tag="VD968_17475"
     CDS             4318..4647
                     /gene="groES"
                     /locus_tag="VD968_17475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020055847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HYE16233.1"
                     /translation="MATNIKPLHDRVIVKRIEEGEQVRGGIIIPDTAKEKPQEGEVIA
                     VGEGKRKDDGTRIPLDVQAGDRVLFGKYSGSEIKVDNEEYLIMREDEILGVIERAGAA
                     SGKKGGK"
BASE COUNT          869 a         1645 c         1552 g          764 t
ORIGIN      
        1 gcgagcccca gcgcgccgag gagcgaaggc agcgagaaga ggagcgagcc cacgctcacg
       61 ccctcgtcgg ccgccgcctg cgcgggcgca atcagaacct ccggctcgct cgcgcgcgcg
      121 acggcagagg cttcctgctg cggcggggcg tcgccgcccg cgccggccgc gacgggctgc
      181 tcggcgggct gtgtcgcgcc cttcggcgcc ccgccggccg cgtgctccgc gtcagtctgc
      241 gtaccccgct ctttcttgtc gtggcggccc gagggctgcg gcgattccgc gcgcgaagcc
      301 tgcgacggca tctcgcgcgg gcgcgtcgtc gcggccgtcc cccgtgaagc cgcgcggggg
      361 cctgggcgcc tgccaccgcg ctcttcctca ccgccctctt ccgcctgcct gcctgtctcg
      421 aagttctcga cgttcaaggc gccgccctgc ccgccgctca cgaccaggtc gaggcggttg
      481 ccgcgcggct gcacggtcac gctcgcgccc ggacgcactg ggacggtcag ctcgagcgag
      541 ttgcttatgc gctgaagctt cacgccccgc ggcgcgccgc cctgcaattc gctcttgccg
      601 ttgacgacga cgacgtggaa aacgccgtcg ggcgtctgga aggtctgcgc gcgcgtgaga
      661 gggccgtcgg ccgagatcga gacgacggag ccgctcaccg agacgccggt gaccttcacc
      721 tccggctcct tccagcgctg ctgcgcgcgc ggagcgcccg tctggcagag cgccacggag
      781 gcgccgagag cgccgacgag gccgagccga atcagccgcg acgcgggcgt ctgttcctgg
      841 cgtaagagtt cgggcaaatc ggagtcgaga ccgagacgtt ccttgttcat ggcatttctt
      901 ccgtcggcgg gcgtgggtcg cctgcccgaa agggcggtga gaggcgcttg tggttcttag
      961 gatgaagcct agcggccggc ggcggtttga gattggggct tagtgccggc gcggggcttt
     1021 tgggagggcg gccaggtcgg tcgccccggc gagagtttcg tttcagcgct gctcgtcgct
     1081 gaacttgtag ccgatgcccc agacggtcaa gaccatctgc gggttctcgg ggttgtcttc
     1141 gatcttggcc cgcagtcggt tgatgtgcga gtcaatcgtt cggtcgtagc cctcgtaaga
     1201 gtagtcccag attttctcca ggaggtactt gcgagggaag acgcggcccg ggttcgacgc
     1261 gaagagccgc aggagctcga actccttcgg cgtcaattca acctgcctgt ccccgacagt
     1321 gacctcgcgc ttggcggggt ctatgcggag gcggccgcgg atgatcgggg cgtcttcgcc
     1381 cgccccctcg gcgcgcgccg cggcgcgcac gcgccgcatc acgctcttga tgcgggcctc
     1441 tagctcccgc agcgagaagg gcttggtgat gtaatcgtcc gcgcccatct ctaggccgag
     1501 caccttgtca accacgtcgt ccttcgccgt cagcatgagg atgggcaggt acggcgcctt
     1561 ctcgcgaagc tcgcggcaga ccgcgaggcc gtccatcttc ggcagcatca ggtcgaggac
     1621 gattgcgtcg gggcggtcgt tcaaggccgc ctgcacgccc gagagcccgt cttcggcagt
     1681 ctgcacgctg tagccggcgc gagagaaata ctcttttatt gcttcgagaa tcttctcgtc
     1741 gtcctctatg acgagcaggt tcagccggcg gtctcccacc tccggcttat cctcgtcggc
     1801 gtccttcgtg cgggctccgt taggggctga tttcgtgatc atcgcaggtg cgttttcggt
     1861 cgggcgagac tggcgacccg cccgcggtac tgccgccgca gcgcggccgg cagcgccaga
     1921 acacttaaga actataacca acaagcagag caaactcaag caataagtta ttttccgccc
     1981 acggcggact gtacggcgcc ggacgccggc cgcggggccg gggagtgaaa aaacaaccgc
     2041 ccggcgaagg aaacgacccg gttttctact ttcggccgcc cgactcccga cttctcatag
     2101 cggccgccgt gtggtattta caggccgcgg gcgcgcattc ttccgtcccg ccccgcccgg
     2161 cgagcccacc cggcaaggac tgaacaacct acaggagtct tatgaaccga gaagagagag
     2221 acgcgcttat tgcgaagtac aaggcgggct acgacgaggt cgcggcgagc ctggaaggct
     2281 taggccccga cgagatgacc gcgcgcccca tcgaaggtaa gtggagcgcg cgcgagatag
     2341 tccaccacct cgccgacagc gagacgaaca gcgccatacg cctgcgcaag ctcctcgcgg
     2401 aagagagccc gcagatacag ggctacgacc aggacttcta cgccgcgcgc ctccgctaca
     2461 acgagcgcga cacggcgccc gccctcgaag ccttccgcgc cgcgcgctcg accaccgcgc
     2521 agatactcga cctgatgacg gacgacgact ggtcgcgcga aggcacacac tccgagtcgg
     2581 gccgctacac cgccgaagac tggctcagga tttacgccgc ccacgcccac ggccacgccg
     2641 cgcaaatccg ccgcctgaga gaagcgctcg gaaagtaacg ggcgctggtg acgcgcgacg
     2701 gcagttctct catgctcgtc actcgtcatt ccccttcagc cttgacaaaa ttccggggcg
     2761 gcgagcacaa tcgcggctcg ccgccgcagc cggggtttct cttcaggccg gcccggccgc
     2821 ccttcaaggc ccgcatgaac gccgcgcaaa ccgtaagcga gaccgaactc cccggcctga
     2881 agctcatcag gcgcggcaag gttcgtgacg tgtacgaggt tgacgaagag cgcctgctca
     2941 tcgtcgccac cgaccgcatc tccgccttcg actgcattct gcccactcgc gtcagtcgca
     3001 aaggcgaagt cctcaccgcc ctctcgcgct tctggttcga gcggctcgcc cacgtctcac
     3061 cgcaccacat gctcacgacc gacctgggcg agatggctga tgccgtccgc gcgcacggcg
     3121 aggtgctgcg gggccgctcc atgctcgtgc gccgcaccga agtcttcccc gtcgaatgcg
     3181 tcgtgcgcgg ctacctcgcc ggctccggct ggaaggacta ccgcgcgacg ggcgagacga
     3241 gcggccgccg tctgcccgag ggcctgcgcg aatccgacaa gctgcccgag ccgatattca
     3301 cgcccgcgac gaaggcggag tcgggtcacg acgagaacat aagcgaagag cgcatgggcg
     3361 agatcgtagg cgccgaagtg acggcgcaac tgcgcgacac ttcgctcgcg ctctaccgcg
     3421 aggccgaagc ctacgcgcgc gagcgcggca tcatcatcgc cgacaccaag ttcgagttcg
     3481 ggcgcgacag cgaaggccgc gtcattctca ttgacgaggc gctaacgccc gactcgtcgc
     3541 gcttctggcc ggcggacggc tacaaccccg gcggccccca gccctctttc gacaagcagt
     3601 tcgtccgcga ctacctggag acgctcgcct gggacaagcg gccgcccgcg ccgccgctcc
     3661 cgccggaagt cgcgcgggcc acgaccgcac gctacctcga agcttacagg ctgctcacgg
     3721 gccgcgagtt gtgaaactaa agcgagggcg cgaacgcacg cacgcccgat tcctgacctt
     3781 cccaggggga aatcgctgcc tattgggagt ttacctcccc ttcggacgga gccaccgatg
     3841 cagatgcgcg cccgcttaga agccctcatt gacgagatgc tcgacggcca aataatgctc
     3901 gacgaggccc tcaccgagtt cgagaagctc tacatacaga aggccctggc ccgcaacaag
     3961 gagcacctct cgcgtaccgc cgtctcgctc ggcatccacc gcaacaccct ctccaagcgc
     4021 gtcgccgcgt accgcacgca ggagcgcccg ccccgcccgc agaaaaactc gcgcaagccc
     4081 gccgcccgcg gcaaacgcta aaaaccgctt caaactgaaa gttgacaaga aatacgggag
     4141 tgctatattt ttagcactcc cgctggggga gtgccagaaa ctggcttttc gtgattgctt
     4201 ttcgggcatt agtgcgcccg cgggcgtggc acggccccgg cgagagtgct aagcgagttc
     4261 agcaataaaa ccggtaagta gagacttttc aaaggcttgg aaggagacta ggcgactatg
     4321 gctacgaaca tcaaaccgct tcacgacagg gtgatcgtca agcgcatcga ggaaggcgag
     4381 caggtgcgcg gcggcatcat catccccgac accgccaaag agaagccgca ggagggcgag
     4441 gtaatcgccg tcggcgaggg caagcgcaag gacgacggca cgcgcatccc cctggacgtc
     4501 caggccggcg accgcgtgct cttcggcaag tacagcggct cggagataaa ggttgacaac
     4561 gaggagtacc tcatcatgcg tgaggacgag attctcggcg tcatcgagcg ggccggcgcg
     4621 gcgagcggga agaagggcgg caagtagtct ttaagacttc cccgcagcct ttcgtttgtg
     4681 aagcatccac tgaagaatcg ggaacactga aggagagaga acagacatgg caaagcaagt
     4741 gattcacggc gaagagtcgc gcgcggctat cctgcgcggc gtcaaccaac tcgccgacgc
     4801 tgttaagatc acgctcggcc ccaaggggcg
//
LOCUS       DASPKR010000655         3367 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1006732, whole genome shotgun sequence.
ACCESSION   DASPKR010000655 DASPKR010000000
VERSION     DASPKR010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3367)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3367
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1006732"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..464)
                     /locus_tag="VD968_17480"
     CDS             complement(<1..464)
                     /locus_tag="VD968_17480"
                     /inference="COORDINATES: protein motif:HMM:NF012879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HYE16234.1"
                     /translation="MKTLRSKALSLNLALAMLLLPALPVLARQGGGAAAGSIPKIQFE
                     KYMLPNGLQVILHVDRKLPVVHVNQWFHVGSKNERPGRSGFAHLFEHMMFQGSKNAPK
                     EYFEYVEAAGANLFEGGVNGTTDQDRTNYFATVPSGNLENLLWVESDRLATLP"
     gene            complement(692..2581)
                     /locus_tag="VD968_17485"
     CDS             complement(692..2581)
                     /locus_tag="VD968_17485"
                     /inference="COORDINATES: protein motif:HMM:NF012869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE16235.1"
                     /translation="MSTAVQQFHEEEALKQFDRGSARRLLRYLRPYKRLIIPALALTL
                     LVNALGVVEPKFFQYAIDWYISPPADALARLSADERVRGVGMIALALLAVKLLQFGVS
                     YAQTVLLQSVGQRVMYDLRSELYEKLQRQEVAYFDRNPVGRVMTRLTSDVDSLNELFT
                     SGVIEGLGDVIMVFAIAAFMFWMDWRLTLVALVTVPLLFVATTWFRKHARRGYDLVRM
                     KLARINSFLQEHVSGAQTVQIFNRESKSLRQFAAVNDDHRRAHIETIFYYSVFFPLVD
                     FIGSLGIALIIWYGGWRVMQNSPGNEVLSIGALVAFIQYSQRLFQPIRDISDKYNVFQ
                     AALIASHRIFRTLDLPVAVEPPGRPARSGRARGRIEFRDVWFAYKEGEWVLKDVSFTV
                     EPGQSVALVGHTGSGKTTITNLLMRFYDVQRGSVMLDGVDVREWDLKSLRENFAVVLQ
                     DVFLFSGTVEGNIRLGRETIDEERVRWAAREVHADRFIERLPGGFGAEVRERGAGLSV
                     GQKQLISFARALAFDPSLLILDEATSSIDTETEQLIQQAIERVMRDRTSVVVAHRLST
                     VQRADKIIVLHHGEIREMGTHQQLLARRGLYWRLYKLQYADDSRRASGPLPEAPLTDS
                     LQFGD"
     gene            complement(2609..3061)
                     /locus_tag="VD968_17490"
     CDS             complement(2609..3061)
                     /locus_tag="VD968_17490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16236.1"
                     /translation="MMNQPGAGANMEAQLRLLRILWAAFLTTIGLYVLVTLFALPGAG
                     AQERAERDNPALLLGLGAVALTTVVLSFVLKKKMYGEAAGRRDPARFQTGFIIALALA
                     ESAALFGVVALFVTLNSYAYLFLALGGAAIALHFPRRDELATAYYGRR"
     gene            complement(3088..>3367)
                     /locus_tag="VD968_17495"
     CDS             complement(3088..>3367)
                     /locus_tag="VD968_17495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE16237.1"
                     /translation="RQPKILILDDALSSVDTYTEEKILARLRGVMRERTSIIVSHRIS
                     TVRDADLICVLDEGRIVERGTHDELLSLGGEYADLYERQLLEEELAAS"
BASE COUNT          587 a         1048 c         1178 g          554 t
ORIGIN      
        1 ggcagcgtcg ccagccggtc gctctcgacc cagaggaggt tttcgaggtt gcccgaaggg
       61 acggtggcga agtagttcgt cctgtcctgg tcggtcgtgc cgttgacgcc gccctcgaag
      121 aggttggcgc cggcggcctc cacgtactcg aaatactcct tcggggcgtt cttcgacccc
      181 tggaacatca tgtgctcgaa gaggtgcgcg aagccgctgc ggccgggccg ctcgttcttc
      241 gagccgacgt ggaaccactg gttgacgtgc acgacgggga gcttcctgtc aacgtgcagt
      301 atgacctgaa ggccgttcgg cagcatgtac ttctcgaact gaatcttggg tatggagccg
      361 gccgcggcgc ctccgccctg acgcgccagc acgggaaggg ccggcagcag cagcatggcg
      421 agcgcgaggt tcagggacag ggctttactt ctgagcgttt tcacgaggct taagactcct
      481 ttcggggatg tcgggcaaag gtagagacac ttgtacgggg cgcaagagat tttagttccc
      541 gggcgcaccg gcccgcgcgc gaaacttttc agccttactt taaggcagcc ggcggccccg
      601 gcgccagcgg ccgagcgcgt gattggcccg cggccggatc gcgcgcttaa aggtgggcgc
      661 ggacggcaag gagagccgct acggccggtc gctagtcgcc gaactgtagg ctgtcggtga
      721 gcggggcttc ggggagcggc cccgacgcgc ggcgcgagtc gtcggcgtac tgcaatttgt
      781 agaggcgcca gtagaggccg cggcgcgcga gcaactgctg gtgcgtcccc atctcgcgta
      841 tctcgccgtg gtgcaggacg attatcttgt cggcgcgctg cacggtcgag aggcggtggg
      901 cgacgacgac ggacgtgcgg tcgcgcatga cgcgctcgat ggcctgctgt atgagctgct
      961 cggtctcggt gtcaattgag ctggtggcct cgtccagaat caggagcgac gggtcgaagg
     1021 cgagcgcgcg cgcgaaagag atgagctgct tctggccgac ggagagcccg gcgccgcgct
     1081 cgcgaacctc ggcgccgaag ccgccgggca gtcgctctat gaagcggtcg gcgtgaacct
     1141 cgcgcgcggc ccagcgcacg cgctcctcgt caatcgtctc gcgcccgagc cttatgttgc
     1201 cctcgaccgt gccgctgaag aggaacacgt cctgtaggac gacggcgaag ttctcccgga
     1261 gcgacttcaa gtcccactcc cgcacgtcca cgccgtcgag catgaccgag ccgcgctgca
     1321 cgtcgtagaa gcgcatcagc aggttcgtta tcgtcgtctt ccccgacccc gtgtggccca
     1381 ccagcgccac cgactgtccc ggctccaccg tgaaggacac gtccttcaga acccactcgc
     1441 cctccttgta ggcgaaccag acgtctcgga actctatgcg gccgcgcgcc cgtcccgacc
     1501 tggcgggccg cccggggggc tcgacggcca cgggcaggtc gagcgtgcgg aaaatgcggt
     1561 gcgaggcgat gagcgccgcc tggaagacgt tgtacttgtc cgagatgtcg cgtatcggct
     1621 ggaagagccg ctgcgagtac tgtatgaagg cgacgagcgc gccgatggag agaacctcgt
     1681 tgccgggcga gttctgcatg acgcgccagc cgccgtacca gatgatgagg gcgatgccga
     1741 gcgagcctat gaagtcaacg agcgggaaga agaccgagta gtagaagatg gtttcgatgt
     1801 gggcgcggcg gtggtcgtcg ttgacggcgg cgaactggcg gagcgatttc gactcgcggt
     1861 tgaatatctg aaccgtctgc gcgccggaga cgtgctcctg caggaacgag ttgatgcgcg
     1921 cgagcttcat gcgcacgagg tcgtagccgc gccgcgcgtg cttgcggaac catgtggtcg
     1981 cgacgaacag gagcgggacg gtgacgagag cgacgagcgt caggcgccag tccatccaga
     2041 acatgaaggc cgcgatggcg aagaccatta tcacgtcgcc caggccctcg attacgccgg
     2101 aggtgaaaag ctcgttcagc gaatcaacgt ccgacgtgag ccgggtcatc actcggccca
     2161 cggggttcct gtcgaagtat gcgacctcct gcctctgaag cttctcgtaa agctcagagc
     2221 gcaggtcgta catgacgcgc tggccgacgg actgtagcag cacggtctgc gcgtaggaga
     2281 cgccgaactg taggagcttc acggcgagca gcgcgagcgc gatcatgccg acgccgcgca
     2341 cgcgctcgtc ggccgaaagg cgcgccagcg cgtcggccgg ggggcttatg taccaatcaa
     2401 tcgcgtactg gaagaacttg ggctcgacca cgccgagcgc gttgacgagg agcgtgagcg
     2461 cgagcgcagg gatgatgagc cgcttgtacg ggcgcaggta gcgcagcaga cggcgcgcgc
     2521 tgccgcggtc gaactgcttg agcgcctcct cctcgtgaaa ctgttgaacg gctgtggaca
     2581 taaatactgt agcccggcca ccggcccttc agcgccggcc gtagtaggcc gtggcgagct
     2641 cgtcgcggcg cgggaagtgc agcgcgatgg cggccccgcc gagcgccagg aacaggtacg
     2701 cgtaactgtt gagcgtgacg aagagcgcca cgacgccgaa gagcgccgcc gactcggcga
     2761 gcgcgagggc gataatgaag cccgtctgaa atcgcgcggg gtcgcgccgc ccggcggcct
     2821 ccccgtacat cttcttcttc agaacgaaag agagcacgac cgtagtcagc gccacagcgc
     2881 ctaggccgag tagcagcgcg gggttgtcgc gctcggcgcg ctcctgcgcg cccgcgccgg
     2941 gcagggcgaa gagtgtgacg agcacgtaga ggccgatggt cgtgaggaac gccgcccaca
     3001 ggatgcggag cagccggagc tgcgcttcca tgttggcgcc cgcgccgggc tgattcatca
     3061 tctctcgtag agcccctttc cggccgccta gctcgcggcc aactcctctt ccaaaagctg
     3121 ccgctcgtag aggtctgcgt actcgccccc cagcgagagc agctcgtcgt gcgtgccgcg
     3181 ctcgacgatg cgcccctcgt cgaggacgca gatgaggtct gcgtcgcgca cggtcgagat
     3241 gcggtgcgag acgattatgc tcgtccgctc gcgcatcacg ccgcgcagcc gggcgagtat
     3301 cttctcctcc gtgtaggtgt caacggagga gagcgcgtcg tcgagtatga gaatcttggg
     3361 ctggcgg
//
LOCUS       DASPKR010000656         3042 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_622694, whole genome shotgun sequence.
ACCESSION   DASPKR010000656 DASPKR010000000
VERSION     DASPKR010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3042)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_622694"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1629)
                     /gene="dnaG"
                     /locus_tag="VD968_17500"
     CDS             complement(<1..1629)
                     /gene="dnaG"
                     /locus_tag="VD968_17500"
                     /inference="COORDINATES: protein motif:HMM:TIGR01391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HYE16238.1"
                     /translation="MRFPQTFIDDLRRQADIVRVINDYVTLKKKGANWMACCPFHQEK
                     SPSFSVNPSKDIFYCFGCAKGGSVFNFVMEMERVSFPEAVRIVAEKTGVALPALVDDK
                     RFEARRKEADEVIELNSWALAFWEQHLKDGGAEGRAAREYVEGRGISEETRSVFRLGY
                     APNSWDALGSYLKSKGASAGQIERSGLVIKKDAGGFYDRFRGRLVFPVTDAQGRPVAF
                     GARAMRPGDEPKYLNSPETPAYTKGRHLFGLSVSRDEIRRKKFAILVEGYLDLIIPYQ
                     HGIRNVVASLGTALTAEQAKLLGRFARKVVVNYDGDRAGINAAKRAIEVLLPEDFEIK
                     ILVLPDGADPDEFVRSHGAEEYNRRRGQAIPHINFVLEQAVAERDLRNPAHKAEAVEE
                     LLPFVRAVRNPIQRREYFDMIMGTLRVEEQGLRQELWKGVGARAAGSSAAQPDVKQSV
                     VRAGTPAPTVAEQRLLELLVHDAELRDALLPHVAESDYEALPTAAVFRALKHLHESGG
                     AVDFSTLGELTEGDAVAADIVPLVLMHEPERAEGE"
     gene            complement(1642..2757)
                     /locus_tag="VD968_17505"
     CDS             complement(1642..2757)
                     /locus_tag="VD968_17505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16239.1"
                     /translation="MLFALCVALAAAAAPQSPPRAAVAEESREVVLAVRRDRRLHVFD
                     AETLEPLGHFVVHDLAHSVSARPDGRVLFIAQAAERAGDGCCALFALDLETKRLCRMI
                     EPAMWSTPSPDGRLLFTQRGAVGVEVFDARTLEPLARIDAPGNYGLHPSPDGRWLFGT
                     TNWRGPSLDIIDVERRVLVRRLPLPEKLLPRGAWVGGAFYLYGHDGTRGLLWRVTPDT
                     TSLGEPTTVALPGKAIEGAPLVEQVLIPAGESLLLYEPFGWWFHVDIRRERGGAEVPG
                     GFFRVEPGTGRVLAHLAPSIDFAQLVPGPGARHLYGLDAGRPAGGRGVRLLKLDASTG
                     RLLAERALEGDVWHIRPAALPRALLPRGEVRPSRCPQ"
     gene            complement(2828..>3042)
                     /locus_tag="VD968_17510"
     CDS             complement(2828..>3042)
                     /locus_tag="VD968_17510"
                     /inference="COORDINATES: protein motif:HMM:NF013844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HYE16240.1"
                     /translation="TDEARDETDKFLDEAYLHGHARVRIIHGHGTGALRRAVAELLRS
                     HPHVASFDLAPDNQGGAGATIVELKQ"
BASE COUNT          458 a         1050 c         1052 g          482 t
ORIGIN      
        1 ctcgccctcg gcgcgctccg gctcgtgcat gaggacgaga ggcacgatgt ccgcggccac
       61 ggcgtcgccc tccgtcagct cgccgagcgt ggagaagtca acggccccgc cgctctcgtg
      121 caggtgcttg agcgcgcgga acacggcggc ggtcgggagc gcctcgtagt cgctctcggc
      181 gacgtgcggg agcagcgcgt cgcgaagctc cgcgtcgtgg acgagaagct ccaggagcct
      241 ctgctccgcg accgtggggg cgggcgtccc ggcgcgcacg acgctctgct taacgtcggg
      301 ctgcgccgcg gaagagccgg cggcgcgcgc gcccacgccc ttccaaagct cctggcgcag
      361 gccctgctct tcgacgcgga gcgtccccat tatcatgtcg aagtactcgc gcctctggat
      421 cgggttgcgc acggcccgca cgaagggcag aagctcttcg acggcctcgg ccttgtgcgc
      481 agggttgcgc aggtcgcgct cggcgaccgc ctgttcgagc acgaagttga tgtgtgggat
      541 cgcctgcccg cgccgcctgt tgtactcctc cgcgccgtgc gagcgcacga actcgtcggg
      601 gtcggccccg tcgggaagca cgaggatttt tatctcgaag tcctccggca gcagaacctc
      661 aatcgcgcgc ttcgccgcgt ttatgccggc gcggtcacca tcataattga cgacaacttt
      721 gcgcgcaaac ctccccaata atttggcctg ctcggccgtg agcgccgtcc caaggctcgc
      781 taccacgttc cttatgccgt gctggtaagg gattatcaag tcgagatagc cctcaaccaa
      841 tatggcgaat ttcttcctac gtatttcgtc gcgcgagacg ctcaggccga aaaggtgccg
      901 gcccttcgtg taggcgggag tctccggcga gttcaggtac ttcggctcgt cgccggggcg
      961 catggcgcgc gcgccgaagg cgacggggcg cccctgcgcg tccgtgacgg ggaagacgag
     1021 gcggccgcgg aagcggtcgt agaagccgcc cgcgtccttc ttgatgacga ggccgctgcg
     1081 ctctatctgc cccgcgctcg cccccttgct cttgagataa ctgccgagcg cgtcccaact
     1141 gttcggcgcg tagcccagtc gaaagaccga gcgcgtctcc tccgagatgc cccgcccctc
     1201 gacgtactcc ctcgccgccc tcccttcggc gccgccgtcc ttcaagtgct gctcccagaa
     1261 cgcgagcgcc cacgagttca gctcgattac ctcgtcggcc tccttgcgcc gagcctcgaa
     1321 gcgcttgtcg tccacaagcg cgggcagcgc cacacccgtc ttctccgcca ctatccgcac
     1381 cgcctcgggg aacgacacgc gctccatctc catcacgaag ttaaagacac tccccccctt
     1441 cgcacagccg aagcaataga aaatatcttt agacgggttg acggagaacg aagggctctt
     1501 ctcctggtgg aaggggcagc aggccatcca gttggcgccc ttcttcttga gcgtcacgta
     1561 gtcgtttatg acgcgcacga tgtcggcctg ccgccgtagg tcgtcaatga atgtctgcgg
     1621 gaagcgcatc cgagtttcat tctactgcgg gcagcgcgag gggcgcacct cgccgcgggg
     1681 caggagcgcg cgggggaggg ccgcggggcg tatgtgccaa acgtcccctt cgagcgcgcg
     1741 ctcggcgagc agccttccgg tcgaggcgtc gagcttcagg agccgcacgc cgcgcccccc
     1801 ggcggggcgg cccgcgtcga ggccgtagag gtggcgtgcg ccgggccccg gcacgagctg
     1861 cgcgaagtca atcgagggcg cgaggtgcgc cagcaccctg cccgtccccg gctcgacgcg
     1921 gaagaagccg cccggcactt ccgcgccgcc gcgctcgcgc cgtatgtcaa cgtggaacca
     1981 ccagccgaag ggctcgtaga gcagcaggct ctcgccagcg ggtatcaaga cctgctcgac
     2041 gagcggggcg ccctcgatag ccttgcccgg aagcgcgacc gtggtgggct cgccgagcga
     2101 ggtcgtgtcg ggcgtgacgc gccagagcag tccccgcgtg ccgtcgtggc cgtagaggta
     2161 gaacgcgccg ccgacccacg cgccgcgcgg caggagtttt tccggcaggg gcagtcggcg
     2221 cacgagcacg cgacgctcaa cgtctatgat gtcgagcgag gggccgcgcc agttggtcgt
     2281 gccgaagagc cagcgcccgt cgggcgaggg gtgcaggccg tagttgccgg gcgcgtctat
     2341 gcgcgccagg ggctcgagcg tgcgcgcgtc gaagacctct acgccgacgg ccccgcgctg
     2401 cgtgaagagg agacggccgt ccggcgaagg cgtgctccac atcgcgggct ctatcatgcg
     2461 gcacagcctc ttcgtctcaa ggtcgagcgc gaagagggcg cagcagccgt cgcccgcgcg
     2521 ctcggccgcc tgcgctatga agagcactcg gccgtcgggc ctcgccgaga cgctgtgcgc
     2581 gaggtcgtgg acgacgaagt ggccgagcgg ctctaaggtc tccgcgtcga agacgtgcag
     2641 gcggcggtcg cggcgcacgg cgagcacgac ctcgcgcgac tcttcggcga cggctgcgcg
     2701 cggcggcgac tgaggggcgg ccgcggccgc caacgcgacg cagagcgcaa acagcatccc
     2761 tctcgtcaac gcgcgcgggc tgagtagcgg aagtgatctc acggctttca cccctctggg
     2821 ggaggcgtca ttgcttcagc tcgacgattg tcgcgccggc gccgccctgg ttgtcgggcg
     2881 cgaggtcaaa ggaggcgacg tgcgggtggc tgcgcaaaag ctctgcgacg gcgcggcgca
     2941 gcgcgcccgt gccgtggccg tggatgattc ggacgcgcgc gtggccgtgc aggtacgcct
     3001 cgtcgaggaa cttgtcggtc tcgtcgcgcg cctcgtcggt gg
//
LOCUS       DASPKR010000657         2058 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1401722, whole genome shotgun sequence.
ACCESSION   DASPKR010000657 DASPKR010000000
VERSION     DASPKR010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1401722"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..199)
                     /locus_tag="VD968_17515"
     CDS             complement(<1..199)
                     /locus_tag="VD968_17515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018041037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYE16241.1"
                     /translation="MSLSGIHLVTGGAGFIGSHIASALACAGARVRVLDDLSTGHLHN
                     LEEIRGDVELVRGSLNDPEALA"
     gene            complement(257..1555)
                     /locus_tag="VD968_17520"
     CDS             complement(257..1555)
                     /locus_tag="VD968_17520"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HYE16242.1"
                     /translation="MHIAVIGSGYVGLVTGACFAEFGVNVTCVDVDSQKIAQLNEGKI
                     PIYEPGLDQLVAKNKQAGRLRFTTDVKSAVEQSLVIFLAVGTPPREDGSADLSYIEQA
                     ARDVARHMNGYKVLVTKSTVPVGTGEHLRRLVCEHQGKPCDFGIVSNPEFLREGAAID
                     DFMRPNRVVIGSRDEAAVAIMRDLYRPLYLIETPVVITSTEAAELIKYVSNAFLATKI
                     SFINEVANLCDEIGCDVHDVARAMGMDNRIGRYFLHPGPGYGGSCFPKDTSALLSVAK
                     QYGSESLIVEAVVEVNRRQRERMIRKIERLVGDSTGKTFAVLGLSFKPETDDMREAPS
                     VDIIRALVAKGGSVRAYDPVAVEQARKILPDVEYAPDEYSAVEGADALIFMTEWNQFR
                     ALNMERIRGLMRSPKVADLRNIYEPAAMRELGFDYVGVGR"
     gene            complement(1743..>2058)
                     /locus_tag="VD968_17525"
     CDS             complement(1743..>2058)
                     /locus_tag="VD968_17525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16243.1"
                     /translation="QPNVFMVDVECGDTLVATQSGKVELRAGNTVKQIAAGNQDTAGT
                     ATGPGTRCTRYQMPEMRGLSGAGLAALLLGVGGAIAAAIFAAQDDDITFGDGPIVISP
                     SR"
BASE COUNT          339 a          659 c          699 g          361 t
ORIGIN      
        1 gcgcgagcgc ctcggggtcg ttcaggctcc cgcgcaccaa ctccacgtcg ccgcgtatct
       61 cttcgaggtt gtgcaggtgg ccggtcgaga ggtcgtcgag cacgcgcacg cgagcgcccg
      121 cgcatgcgag cgccgacgcg atgtgcgaac cgatgaagcc cgccccgccc gttacgaggt
      181 ggattccaga gagactcata agaaagtgct gggaggtgag tgacgagtag aactactcat
      241 cactcaccgc ttccgtttat ctccccacgc cgacgtagtc gaagccgagc tcgcgcatgg
      301 cggcgggctc gtagatgttc cgcaggtctg cgaccttcgg cgagcgcatg agcccccgga
      361 tgcgctccat gttgagcgcg cggaactggt tccactccgt catgaagatg agcgcgtcgg
      421 cgccctcgac ggccgagtac tcgtccggtg cgtactctac atccggcaga atcttgcgcg
      481 cctgctcgac cgccacgggg tcgtatgcgc gcacgctgcc gcccttggcg acgagcgccc
      541 tgatgatgtc cacggacggg gcctcgcgca tgtcgtcggt ctccggcttg aaggagaggc
      601 cgagcacggc gaaggtcttc cccgtagagt cgccgacgag cctctctatc ttgcggatca
      661 tcctctcgcg ctggcgccgg ttgacttcta cgaccgcctc gacgatgagc gactcggaac
      721 cgtactgctt cgccaccgac agcagcgccg acgtgtcctt cgggaagcag gagccgccgt
      781 agccggggcc ggggtgcagg aagtagcgcc cgatgcggtt gtccataccc atggcgcgcg
      841 caacgtcgtg cacgtcgcag cctatctcgt cgcagaggtt cgccacctcg ttgatgaagg
      901 aaatcttcgt ggcgaggaag gcgttcgaga cgtacttgat cagctcggcc gcctcggtcg
      961 aggttatgac gaccggagtc tctatcaggt agagcgggcg gtagaggtcg cgcatgatgg
     1021 cgacggccgc ctcgtcgcgg ctgccgatga ccacgcggtt gggccgcatg aaatcgtcta
     1081 tggccgcgcc ctcgcgcagg aactcgggat tcgagacgat gccgaagtcg cagggcttgc
     1141 cctggtgctc gcagacgagc cggcgcaggt gctcgcccgt ccccacgggc acagtggact
     1201 tcgtcacgag caccttgtag ccgttcatgt ggcgggccac gtcgcgcgcg gcctgctcga
     1261 tgtagctgag gtcggccgag ccgtcctcgc gcggcggcgt gcctacggcg aggaaaatga
     1321 cgaggctctg ctcgacggcc gacttaacgt cggtggtgaa tcgcaggcgg ccggcctgct
     1381 tgttcttcgc gacgagctgg tcgaggccgg gctcgtagat ggggattttg ccttcgttga
     1441 gctgggctat cttctgcgag tccacgtcaa cgcacgtgac gttgacgccg aactccgcga
     1501 agcaggctcc cgtcacaaga ccgacgtagc ccgacccgat taccgcgatg tgcatttggg
     1561 cagaaagacc tttcgaagcc gaaggggtgt tcacgatccg ggcggagatt atctcagaca
     1621 aaagcttgcg ggtcacgcgg cgcgagacgc gcgtgacccg caaagtcgtg gggtcgaaac
     1681 actatggtgt gccgcccctc acctccggga gcgacctgag agccgtggcc cgtccagaag
     1741 ccttagcggg acgggctaat gacgatgggg ccgtcgccga acgtgatgtc gtcgtcctgc
     1801 gccgcgaaga tggccgcggc gattgcgccg ccgacgccga gcaggagggc cgccaggccg
     1861 gcgccgctca ggccgcgcat ctcaggcatc tggtagcgcg tgcagcgcgt gccggggccg
     1921 gtggccgtgc cggccgtgtc ttggttaccg gcggcgatct gcttgacagt gttgccggcg
     1981 cgcagctcga ccttgcccga ctgcgtcgcg accagcgtgt cgccgcactc aacgtcaacc
     2041 ataaagacgt taggctgg
//
LOCUS       DASPKR010000658         2258 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1919281, whole genome shotgun sequence.
ACCESSION   DASPKR010000658 DASPKR010000000
VERSION     DASPKR010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1919281"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1609
                     /locus_tag="VD968_17530"
     CDS             <1..1609
                     /locus_tag="VD968_17530"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE16244.1"
                     /translation="FITGLERIGGFGGKSDRLNQYNTYLGNPDMFDADFARYRSATAE
                     SVRAAVDRWLNTRNRLLVRFHPEKSGRPSQVAIDRAKEPALGGDRPFRAPEVKTAKLD
                     NGIELFVVERRDLPKVSVSLATRAGSVSDPADKVGLAGLTARVARRGTKTRDALQIDS
                     TLGDLGTSLGWSTAREASSLSMEVLKRNLNPALTVMADVARNPSFPATEFDREKKLLL
                     DQLSQQANNPGAVANRVAQMLAFGADHPYGRPSLGLPGTVQPVTREDLVRFHETYWKP
                     GSSALVFVGDVTLAEATEMARQHFGSWSGGAAPAVNVPAAKPVGPGKVFVVDRQDAAQ
                     TVVAHILAAPPRRSDDYYAFRLADFVYGGGGFGTRLNLNLREDKGYSYGVFSFPALYS
                     KAGTWIASGGVQSDKTKESVVEFMSELKNIAGAKPISEAEFTNARLRRVRGYAQQFES
                     IGRIAGQIVNLWATGLPMTELQEETAGIERTSLAAANAAAAKYAAPAGTTLLLVGDLS
                     KIEAGLRELNLGEIVVLDVEGRPAARR"
     gene            complement(1721..>2258)
                     /locus_tag="VD968_17535"
     CDS             complement(1721..>2258)
                     /locus_tag="VD968_17535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16245.1"
                     /translation="EHVDHQRFRTESRADIYNDIYALFALNELNTYRYSVSSAGAGGM
                     VQMIPSTYAMLRRMHPSVGLNPDFVAGMRNHGNALEAMLLYMQDTWNDLALKQEVLDA
                     MASNIATKSELMSAGYNSNPARLPLYLRRGGPGWRTLIPRETQMYLQIYKSVEGLVEF
                     KNRSGDTGKAQAAATPQQ"
BASE COUNT          364 a          799 c          745 g          350 t
ORIGIN      
        1 cttcatcacg ggcctcgagc gcatcggcgg gttcggcggc aagagcgacc gcctcaacca
       61 gtacaacaca tacctcggca accccgacat gttcgacgcc gacttcgcgc gctaccggag
      121 cgcgaccgcg gagagcgtgc gcgcggccgt tgaccgctgg ctcaacacgc gcaaccgcct
      181 gctcgtgcgc ttccacccgg agaagtcggg gcgcccctcg caggtggcga ttgaccgcgc
      241 gaaggagccg gcgctcggcg gcgaccgccc gttccgcgcg cccgaggtca agaccgcgaa
      301 gctcgacaac ggcatcgagc ttttcgtcgt cgagcggcgc gacctgccca aagtctccgt
      361 ctcgctcgcc acccgcgccg gcagcgtctc cgacccggcc gacaaggttg gcctcgcggg
      421 cctgaccgcg cgcgtcgcgc ggcgtgggac gaagacgcgc gacgccttgc agattgactc
      481 tactctcggc gacctcggaa cctcgctcgg ctggagcacc gcgcgcgagg cttcgagcct
      541 ttcgatggaa gtcctgaagc ggaacctcaa cccggcgctc accgtcatgg ccgacgtggc
      601 gcgaaacccg tcgttcccgg ccaccgagtt cgaccgcgaa aagaaactcc tgctcgacca
      661 gctctcgcag caggccaaca accccggcgc cgtagccaac cgcgtcgcgc agatgctcgc
      721 cttcggcgcc gaccaccctt acggccgccc gtcgctcggc ctgcccggca ccgtgcagcc
      781 cgtcacgcgc gaagacctcg tgcgcttcca cgagacctac tggaagcccg gaagctccgc
      841 cctcgtcttc gtcggcgacg tgacgctcgc cgaggcgacc gagatggccc gccagcactt
      901 cggctcgtgg tcgggcgggg cggccccggc cgtcaacgtc ccggccgcta agcccgtagg
      961 ccccggcaag gtcttcgtcg ttgaccggca ggacgccgcg cagaccgttg tcgcgcacat
     1021 actcgccgcg ccgccgcgaa ggtctgacga ctactacgcc ttccgcctcg ccgacttcgt
     1081 ctatggcggc ggcggcttcg gcacgcgcct gaacctgaac ctgcgcgagg acaagggcta
     1141 ctcctacggc gtcttctcct tcccggcgct ctactcgaag gcggggacgt ggatagcgtc
     1201 gggcggcgtg cagtcggaca agacgaagga gtccgtcgtc gagttcatga gtgaattgaa
     1261 gaacatcgcc ggcgccaagc ccatcagcga ggccgagttc acgaacgcca ggctcaggcg
     1321 cgtgcgcggc tacgcgcagc agttcgagtc catcggccgc atcgccggcc agatagtcaa
     1381 cctctgggcg acgggccttc cgatgacgga gcttcaggag gagacggccg gcatcgagcg
     1441 caccagcttg gccgccgcaa acgccgccgc cgccaagtac gccgcgcccg caggcacaac
     1501 gctgctgctc gtcggcgacc tctccaagat cgaggcgggc cttcgcgagc tgaacctcgg
     1561 cgagatagtc gtcctggacg tggaaggcag gcccgccgcc cgcaggtaag ctgtaagcgc
     1621 ggcgcgggaa aagatgaagg gcccggtgga ttgaacccac cgagcccttc gtcatcttcc
     1681 ggctcactcg cgccggggac gcgtagccgc taagcgcgcc tcactgctgc ggcgtcgccg
     1741 cggcctgtgc cttccccgta tcgcctgagc ggttcttgaa ctcgacgagg ccctcgaccg
     1801 acttgtaaat ctgcaagtac atctgcgtct cgcgcggtat gagcgtgcgc cagccggggc
     1861 cgccgcgccg caggtagagc ggcaggcgcg ccgggttcga gttgtacccg gccgacatca
     1921 gctccgactt cgtagcgatg ttgctcgcca tcgcgtcgag cacttcctgt ttgagcgcga
     1981 ggtcgttcca ggtgtcctgc atgtagagca gcatcgcttc gagggcgttg ccgtggttgc
     2041 gcatgcctgc gacgaagtcg gggttgaggc caaccgaggg gtgcatgcgc cggagcatgg
     2101 cgtaggtcga ggggatcatc tgcaccatcc cgcccgcgcc ggccgagctc accgagtagc
     2161 ggtaggtgtt cagctcgttc agggcgaaga gcgcgtagat gtcgttgtag atgtcggcgc
     2221 ggctctccgt gcggaagcgc tggtggtcga cgtgctcg
//
LOCUS       DASPKR010000659         4410 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1401859, whole genome shotgun sequence.
ACCESSION   DASPKR010000659 DASPKR010000000
VERSION     DASPKR010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4410)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4410
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1401859"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2647
                     /locus_tag="VD968_17540"
     CDS             <1..2647
                     /locus_tag="VD968_17540"
                     /inference="COORDINATES: protein motif:HMM:TIGR03118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TIGR03118 family protein"
                     /protein_id="HYE16246.1"
                     /translation="SAFRQTNLVADWPGVARVQDPLLVNPWGISMTTTSPFWVANAGT
                     STSTLYRGDVGGAPLVINPGLSHITIPGGLPTGTVANANANEFVLPGPCASPPCGANF
                     LFASITGNISGWDPNAPAAGSTTAVIAAHPPNVGPVPNVYTGLAIGNNGSANFLYAAN
                     ISVGRIDVFDSSFALQSTASFPFIDPTLPPLYHPHNIQALGGELYVAYARVNPGPGDP
                     YVRPGGAVSVFDFNGNFLRRVATDGTLSAPWGLALAPASFGIFPNALLVGNFDFDGNG
                     RISAFDPTTGDFLGQLQGEAGELISIDGLWGITFGNGAAGGDPNKLYFAAGVAHEEHG
                     LFGSLAPTTASATNLIQFADTEFIINEGGGHIDVTVVRLGDASHAASVSYATFDQSQP
                     GHASQKSDYEIALGRLDFAPGETSKTFRVLIVDDRFQEGSGEVVDLVLSNPAGQGTGL
                     GSPNVAELRIVDNDPAPVPGNPIDDPTFFVRQHYLDFLNREPDAAGLQFWTNQINLLC
                     NGNQQCVENQRVIVSAAFFLSIEFQETGLLDILTHQAAFGRRPLYGQFMLGTQRLQRG
                     VVVGQAGWPEQLEANKQAYFDEFVTRPEFVSRYPATLTNEQYVDALLTTAGLTPEQVR
                     LFVVQMTNAQENPPANPTSSNGGPRPTSFGTARLLFNEAQTALTLTATVNNIDFTGAQ
                     SPAEANDNLTNAHIHASASVTPATNAPVVWGFIGLPFNDNNPNDSVVTPFASGVGGNV
                     RAKWDAPEGNNTTLAAQLANLREGRAYVNFHTTQFPGGEIRGNLPRADALRTSLVAGL
                     NGGTLTRAQVLRRIAEAEELRLRHFNAAFVLMEYFGYLRRDPDEAGFNFWLNKLNSFN
                     GDFLQAEMVKAFISSLEYRQRFGPS"
     gene            complement(2735..>4410)
                     /locus_tag="VD968_17545"
     CDS             complement(2735..>4410)
                     /locus_tag="VD968_17545"
                     /inference="COORDINATES: protein motif:HMM:NF017044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYE16247.1"
                     /translation="AVAYERDGTFNVAMQLSEAEAVADWRFYNSYARRVARVTAEDVR
                     RVAAAYFTEDARTVGHFIPRRPGANGSHGSNGGAPANGPSQARPARARRGRQFYRDPA
                     EVYDAGGEDGPGGPRRSSPSGAAAAGAVSRAARTELETGAVLLVIENTAMPTVSVRGS
                     LRAGSYFEGKERPGLARLVAGMLERGTRRRTKIELAGDLERVGAQVDFSADPFAVQVV
                     GRSLAGDFPLLLGALAEMLREPSFPEDELEKLKQQTVAAIREQQSDTRWRAYERLSQT
                     VFDESNPFYAHAGERLIESVNSYTAADVREFYEKFYGGRSLIVSVAGDVRADEAARLF
                     RESFGDFGGPESVEINVADPAQQEGARREVVLVEDKANVDVIIGSAAPLRRDAADYYA
                     AVLANRALGESTLSSRLGLQVRDAEGLTYGIGSRFRTPSLAAGPWYIAVSVNPGNVER
                     AINSALSVLREYVREGIRPEELEDEKSSAVGSFKVSLSTNAGLAEALWQAEFYRLGAD
                     YIERYPQLIHAVTAEEVNAAIHKYFRPDHLTIVIAGNINPAHGEPAPVA"
BASE COUNT          722 a         1627 c         1408 g          653 t
ORIGIN      
        1 cagcgccttc cggcagacca acctcgtcgc cgactggccc ggcgtcgccc gcgtccaaga
       61 ccccctgctc gtgaacccct ggggcatctc gatgacgacg accagcccct tctgggtggc
      121 gaacgcgggg acaagtacct cgacgctcta ccgtggcgac gtgggcggcg ccccgctcgt
      181 catcaacccc ggcctctccc acataaccat accgggaggg ctgccgacgg ggacggtcgc
      241 caacgccaac gcgaacgagt tcgtcctccc cggcccgtgc gccagcccgc cgtgcggggc
      301 gaacttcctc ttcgcctcga taacgggcaa catatcgggc tgggacccga acgccccggc
      361 cgcgggctcg accaccgccg tcatcgcggc tcacccgccg aacgtcggac ccgtacccaa
      421 cgtttacacg ggcctcgcca taggcaacaa cggctcggcc aacttcctct acgccgccaa
      481 catctccgtc ggtcgcattg acgtgttcga cagctcgttc gcgctccaga gcactgcgag
      541 cttcccgttc atagacccga cgctgccgcc gctctaccac ccgcacaaca ttcaggcgct
      601 cggcggggag ctctacgtcg cttacgcgcg cgtcaacccc ggccccggcg acccttacgt
      661 gcggccgggc ggcgccgtca gcgtcttcga ctttaacggc aactttctgc ggcgcgtcgc
      721 cacggacggc acactgagcg cgccctgggg gctcgcgctc gcgcccgcga gcttcggcat
      781 cttcccgaac gcgctcctgg tcggcaactt cgacttcgac ggcaacgggc gcatcagcgc
      841 cttcgacccg accaccggag actttctcgg ccagcttcag ggcgaggccg gcgagctcat
      901 cagcattgac ggcctttggg gcatcacctt cggcaacggc gcggccggcg gcgaccccaa
      961 caagctctac ttcgccgccg gggtggccca cgaggagcac ggcctcttcg gctcgctcgc
     1021 gccgacgacc gcctcggcca ccaacctcat acagttcgcc gacaccgagt tcatcatcaa
     1081 cgagggcggc ggccacatag acgtgacggt cgtgcgcctc ggcgacgcct cgcacgccgc
     1141 ctcggtcagc tacgccacct tcgaccagtc gcagcccggc cacgcctctc agaagagcga
     1201 ctacgagata gcgctcggcc ggctcgactt cgcgccgggc gagacctcga agaccttccg
     1261 cgtgctgatc gtggacgacc gcttccagga gggctcgggc gaggtggttg acctcgtgct
     1321 cagcaacccg gcggggcagg ggactgggct cggcagcccc aacgtggccg agctgcggat
     1381 cgtggacaac gaccccgcgc ccgtccccgg gaaccccata gacgacccca cgttcttcgt
     1441 ccgccagcac tacctcgact tcctcaaccg cgagccggac gccgccggcc tacagttctg
     1501 gacgaaccag ataaacctgc tatgcaacgg caaccagcag tgcgtcgaga accagcgcgt
     1561 gatagtctcc gcggccttct tcctctccat agagttccag gagacgggcc tgctcgacat
     1621 actcacgcac caggccgcct tcggccgcag gccactctac ggccagttca tgctcggcac
     1681 gcagaggctc cagcgcggcg tcgtcgtcgg gcaggccggc tggcccgagc agctcgaggc
     1741 caacaagcag gcatacttcg acgagttcgt cacgcgcccc gagttcgtct ccagataccc
     1801 ggctacgctg acgaacgagc agtacgttga cgcgctgctc acgaccgccg ggctgacgcc
     1861 cgagcaggtg cgcctcttcg tcgtgcagat gacgaacgcg caggagaacc cgcccgccaa
     1921 cccgacctcc tcgaacggcg gcccgcggcc cacctccttc ggcacggccc gcctgctctt
     1981 caacgaggcg cagacggccc tgacgttgac ggccaccgtc aacaacatag acttcaccgg
     2041 cgcgcagagc ccggcggagg ccaacgacaa cctcaccaac gcgcacatac acgcgagcgc
     2101 ctcggtcacg ccggcgacga acgcccccgt cgtctggggc ttcatcggct tgccgtttaa
     2161 cgacaacaac ccgaacgact cggtcgtcac gccgttcgcc tccggggtcg gcggcaacgt
     2221 ccgcgccaag tgggacgcgc ccgagggcaa caacacgacg ctcgcggcgc aactcgcgaa
     2281 cctccgggag gggcgcgcct acgtcaactt ccacacgacg cagttcccgg gcggcgagat
     2341 acgcggcaac ctcccgcggg ccgacgccct cagaacttcg ctcgtcgcgg gcctgaacgg
     2401 cggcacgctc acgcgcgcgc aagtcctgcg gaggatcgcc gaggcggagg agctgcgcct
     2461 gcgccacttc aacgcggcct tcgtcctgat ggagtacttc ggctacctga ggcgcgaccc
     2521 ggacgaggcc ggcttcaact tctggctcaa caagctgaac tccttcaacg gcgacttcct
     2581 acaggccgag atggtcaagg cgttcatctc ctcgctagag taccgccaac gcttcgggcc
     2641 gagctaaagg ctaaaggctt ggggccagag actgggggcc ggtcagggag tcaagctcct
     2701 gaccggcccc cagtctctgg ccccaaggct ctttttaagc gacgggcgcg ggctcgccgt
     2761 gggcggggtt gatgttgccg gcgatgacga ttgtcaggtg gtcggggcgg aagtacttgt
     2821 gtatggcggc gttgacctcc tcggccgtga cggcgtgaat caactgcgga tagcgctcga
     2881 tgtagtccgc gccgaggcgg tagaactcgg cctgccagag cgcctcggcg aggccggcgt
     2941 tcgtagagag cgagaccttg aaggagccga cggccgaaga cttctcgtcc tcgagctcct
     3001 cgggccgtat gccttcgcgc acgtactcgc gaagcaccga gagcgccgag ttgatcgcgc
     3061 gctcgacgtt gccggggttg accgagacgg ctatgtacca cggccctgcg gcgagcgaag
     3121 gcgtgcggaa gcgcgagccg atgccgtagg tcaaaccctc cgcgtcgcgc acctgaagcc
     3181 cgaggcgcga agagagcgtt gactcgccga gcgcgcggtt tgcgagcacg gccgcgtaat
     3241 agtcggccgc gtcgcgccgc aggggggcgg ccgagccgat tatcacgtcc acgttcgcct
     3301 tgtcctcgac gagcacgacc tcgcgccgcg cgccctcctg ctgcgccggg tctgcgacgt
     3361 ttatctcgac gctctcgggg ccgccgaagt cgccgaacga ctcgcggaac agccgcgctg
     3421 cctcgtcggc gcgcacgtcg cccgcgaccg agactatcag cgagcgcccg ccgtagaact
     3481 tctcgtagaa ctcgcgcacg tcggcggccg tgtaggaatt gacgctctcg atgaggcgct
     3541 cgcccgcgtg cgcgtagaag gggttcgact cgtcgaagac cgtctgcgac agccgctcgt
     3601 aagcgcgcca gcgcgtgtcg gactgctgct cgcggattgc cgcgaccgtc tgctgcttga
     3661 gcttctccaa ctcgtcctcg gggaacgaag gctcgcgcag catctcggcg agcgccccga
     3721 gcagaagggg gaagtcgccc gcgagcgagc gcccgacgac ctgaacggcg aaggggtctg
     3781 cggaaaaatc aacctgcgcg ccgacccgtt cgaggtcgcc cgcaagctca atcttcgtgc
     3841 gccgccgcgt cccccgctcg agcataccgg cgacgagccg cgcgaggccc ggccgctcct
     3901 tcccctcgaa gtaagagccc gcgcggaggc tcccgcgcac cgagaccgtc ggcatggccg
     3961 tgttctcgat gacgagcagg acggcgcccg tctcaagctc agtccgcgcg gcgcgcgaca
     4021 ccgccccggc cgcggcagcg cccgaaggcg aagagcggcg cgggccgccc ggcccgtctt
     4081 cgccgccggc gtcgtacact tcggccgggt cgcggtaaaa ctgccggccg cgcctcgccc
     4141 tcgcggggcg ggcctggctc gggccgttgg cgggcgcgcc gccgtttgac ccgtgcgatc
     4201 cgttcgcgcc cgggcgcctc ggtatgaaat ggccgaccgt gcgcgcgtcc tccgtgaagt
     4261 aagctgcggc gacgcgccga acgtcttcgg ccgtcacgcg cgcgacccgc ctcgcgtatg
     4321 agttgtagaa gcgccagtcc gcgacggcct cggcttcgga caactgcatc gcgacgttga
     4381 aggtgccgtc ccgctcgtat gcgacggcgg
//
LOCUS       DASPKR010000660         7388 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_361366, whole genome shotgun sequence.
ACCESSION   DASPKR010000660 DASPKR010000000
VERSION     DASPKR010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7388)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7388
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361366"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VD968_17550"
     CDS             <1..227
                     /locus_tag="VD968_17550"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HYE16248.1"
                     /translation="ELEFQTVNGAIDLSFPASLSADVHAETVNGEITSDFPLTVTGRF
                     SKRRLDGTIGGGGRELRLQTVNGSVQIRRG"
     gene            381..2231
                     /locus_tag="VD968_17555"
     CDS             381..2231
                     /locus_tag="VD968_17555"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HYE16249.1"
                     /translation="MSKMRWVLGLAALAALLAAAPDGARARQERRPELSEEFHQSYPL
                     SAGGRVSLSNINGDVRVTAWDRDEVKIDAVKRAYKQERLREAEIRVSAEPGHVAVETK
                     YPEYRYHRDSERSREDNPASVEYTLTVPRGARLREIKLINGSLDIEGVSGAVDASSIN
                     GRVTAKGLTGRVNLSVINGTLEAAFDRLAEGGSVTLSSVNGPVSVTLPSDANAVLRAS
                     TVHGAISNDFNLPVRAGEYVGRNLEGRLGSGGADVRVNNVNGTVQLRRANDNRAPSPV
                     TNLLSETRGRKDFEGDEDGDEEAGEAEREAREELRKDEAERAREIREAVREAREAARE
                     GERAAREAAREARQEVKENLMEHSSAEGAHGRRLMERESNSIAVSGSPAVHVETFDGS
                     VSVHAWDKPEVAYTAIKRAAGEREMKGIRVVSSGGGSGEVRVRAEFDKSQASEYVERD
                     GRVVSFNSGASVELDVYVPRNSALFVSSGDGRIRVEGVSGELTVNTGDGSIDVSGGAG
                     RLRATTGDGAVRVADFEGEADARTGDGRITLDGRFRKLSARTGDGTISLTIPADASFT
                     IETDAESVVNDGFAVSQDPGEGRVRRWRVGSGGEVFSLRTGDGHVILRRR"
     gene            2550..5741
                     /locus_tag="VD968_17560"
     CDS             2550..5741
                     /locus_tag="VD968_17560"
                     /inference="COORDINATES: protein motif:HMM:NF018190.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5916 domain-containing protein"
                     /protein_id="HYE16250.1"
                     /translation="MIKKALHLAALFALALNSLALAPLPARAQQVASNSRPRTTAPGG
                     TAGSPLLKRMALRAEETAEGTRVRVASDAPVDGYEAYAEGGRFVVLIPQASAAALPTE
                     GLAGRGFESLTAEQRGHDAVLLFTPRQGFAPRVRASFNRLDVLFVAQQSGGSGAETAA
                     TATPTPSPVPAPPPSSTAAPADGDPSKAPLTPAVPTSEAAKSNLNPPATKAARLAALL
                     TPEKANPVTIPKTEKAPVIDGKLDDEVWKSAAVFKDFIQYRPEDLVAPTKQTEAYITY
                     DAKFLYVAFKAFDEKDKVRATVAKRDAVFDDDWVGIWLDTFNDGRRAYELIFNPLGIQ
                     ADAIFTEGINEDFSVDIVHESKGSITDDGFVVEVAIPFKSLRYTAGKDKKWGLHLLRT
                     IKRFNNEQSTWMPISKDNSSLLGQRGYITGLEGVSAERTLEIIPSFTASQTGQRVNRP
                     IPGAPDARAFTPVDRMLNKPVEFDLGVTSKFTITPQITLDFTYNPDFAQVEADATVVT
                     ANQRFPIFFEEKRPFFLEGKEIFETQISAVHTRTIVDPDYAVKLTGKQGRNTFGVLLA
                     SDPNPGRLTDDELDFLKRTEGERGLSDSDRARRNALLGIFDKNATVGILRLKRDVGKE
                     SFIGFLGTSYDFLDRHNQVAGFDSRFRLNKTTTLSAQVLGSTTQAPFFFAEEARTDDR
                     RVSGMAYSVYLNNSGRNWGYELGSTGRSRFFRADVGFNRRFDTNNPTFFARYNSDEKP
                     KAAIVAWRVYNFMGSNFDWRGRGQRFVNESQLQLRMQRQTFIGIGFEKGFERVFEDEF
                     GGTREAIGRQTVETFAPLIGREAASALSPCDPTGFTAPVIPDDPTTPDVNEERRLARC
                     TFAGAATERRADRTNLYGYFETVPSKKYAFFMFTSYNWGVLDFDFGSGSPRYPRISPA
                     ALAARQVGRNAPQDPGAGNEFYWESTIRYKPTDAINLSLFYVKDRLTRSDTGRVAFDD
                     NIFTLRGTYQFTRFWFARARVDYSTLASRVRMQYLLGWAPNPGTSFYAGYNDDLNRNG
                     FSPFTGELEPGFRRNGRTFFIKASYLFRKSFGN"
     gene            5885..>7388
                     /locus_tag="VD968_17565"
     CDS             5885..>7388
                     /locus_tag="VD968_17565"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HYE16251.1"
                     /translation="MRKFLTLACAALLLASNVLGQGGGATIVPGDNLVVEGVPAIPAS
                     LAEEVRRYTEFRSAGLAGWHPARREMLIGTRFGDTNQVHLVKTPGGARTQLTFFPDRA
                     GAVGFRPKTGDYFVFNKDTGGNEFYQYYRYDVATGDVTLLTDGKSRNTSADWSNGGEW
                     LAYSSTRRNGRDNDILLVNPARPDTTRVLAQNEGGGWGASDWSPDDKQLLVVEFLSAN
                     ESYLWLIDAATGAKTLVTPKGGAEKVSYGGGEFSRDGRGLYVTTDRGSEFRRLTYLDL
                     ATKEHTYLTDHIKWDVDSFRLSPDGRSIAFVTNEDGVGRLRLLDTRTRKELPAPRLPV
                     GLVGGLNWHENGRDLGFNLSSARSTSDVYSLDVRTGKVERWTESETGGLNTSQLPEPE
                     LIKWKSFDGREMSGFLYMPPARYNGPRPVIINIHGGPEGQARPGFIGRNNYFLNEMGV
                     AMLFPNVRGSSGYGKTFLQLDNGFKREDTYKDIGTLLDWIAVQPRLDKERV"
BASE COUNT         1317 a         2643 c         2350 g         1078 t
ORIGIN      
        1 acgagttgga gtttcagacc gtcaacggcg ccattgacct gagcttcccg gcgagcctga
       61 gcgccgacgt tcacgccgag accgtcaacg gcgaaatcac ctcggacttc cccctgaccg
      121 tcacgggccg cttcagcaag cgccgcctcg acggcaccat cggcggcggc ggtcgcgagc
      181 tgcgcctcca gaccgtcaac ggcagcgtgc agattcgcag ggggtgaagg cttcaagcgg
      241 gtagccggaa gccagtagcc ggccgagccc ggccccgctg gcgatgacgc tgtgacccgt
      301 tggttcggcg gcgggaggct ccgccgccgg ctactgactc ccggctaccg gcagttttaa
      361 ttcatcgtga gggcttaatg atgtcgaaga tgcgttgggt tttagggctg gcggcgctcg
      421 ccgcgctgct cgcggcagcc ccggacggcg cgcgcgcgcg gcaggagcgc cggccggagc
      481 tttcggaaga gtttcaccag agctacccgc tctcggcggg cggccgcgtc agcctctcga
      541 acataaacgg cgacgtgcgc gtgacggcct gggatcgtga cgaggtaaag attgacgccg
      601 tcaagcgcgc ctacaagcag gagcgcctgc gcgaggccga gatacgggtc agcgccgagc
      661 cgggccacgt cgccgtcgag actaaatatc ccgagtacag ataccaccgc gactccgagc
      721 gcagccgcga ggacaacccc gcgagcgtcg agtacacgct cacagtcccg cgcggcgctc
      781 ggctccgcga aatcaagcta ataaacggct cgctcgacat tgagggcgtc tcgggcgcgg
      841 ttgacgcctc ctccatcaac ggccgcgtga cggccaaagg gctgacgggc cgcgtcaacc
      901 tctccgtcat caacggcacg ctggaggccg cgttcgaccg gctcgcagag ggcggctcag
      961 tcacgctctc ttccgtcaac ggccccgtct cggtgacgct cccctcggac gcgaacgcgg
     1021 tgcttcgggc gagcacagtc cacggcgcta tcagcaacga cttcaacctg cccgtgcgcg
     1081 cgggcgagta cgtcggccgc aacctcgaag gccggctcgg ctcgggcggc gccgacgtgc
     1141 gcgtcaacaa cgtcaacggc accgtgcaac tgcgccgcgc taacgacaac cgcgccccca
     1201 gccccgtgac gaacctcctg tccgagacgc gcgggcgaaa ggacttcgag ggcgacgagg
     1261 acggggacga ggaggccggg gaggccgagc gcgaggcgcg cgaggagttg aggaaggacg
     1321 aggccgagcg cgcacgcgag attcgggagg ccgtgcgcga ggcccgcgag gcggcgcgcg
     1381 agggagagag ggccgcgcgc gaggccgcga gggaagcgcg gcaggaggtc aaggaaaacc
     1441 tcatggagca ctcctcggcc gagggcgctc acgggcgccg gctgatggag cgcgagtcga
     1501 acagcatagc cgtctcgggc tcgcccgccg tgcacgtcga gaccttcgac ggctccgtga
     1561 gcgtccacgc gtgggacaag cctgaggtcg cctacacggc catcaagcgc gccgcgggcg
     1621 agcgcgagat gaagggcata cgcgtcgtct cctcgggcgg tggctcgggc gaagtgcgcg
     1681 tgcgcgccga gttcgacaag tcgcaggcga gcgagtacgt agagcgagac ggccgcgtgg
     1741 tctccttcaa ctcaggcgcg tccgtcgagc ttgacgttta cgtgccgcgc aactccgcgc
     1801 tcttcgtctc gtcgggcgac gggcggataa gggtcgaggg cgtgagcggc gagctgaccg
     1861 tcaacaccgg cgacggctcg attgacgtgt cgggcggggc gggccgcctg cgggcgacga
     1921 cgggcgacgg cgccgtgagg gtcgccgact tcgagggcga ggccgatgcg cgcaccggcg
     1981 acggccgcat caccctggac ggccgcttcc gcaagctctc ggcgcgcacg ggcgacggca
     2041 ccatctcgct cacaatcccc gcggacgcga gcttcacgat tgagaccgac gccgagtcgg
     2101 tcgtcaacga cgggttcgca gtctcgcaag accccggcga ggggcgcgtg cgccgctggc
     2161 gcgtcggctc gggcggcgag gtcttctcgc tgcgcacagg cgacggccac gtgattctta
     2221 ggcgtcgtta acaacgacgc ccccgcgcgt cagaagtaga gagaaaggcg gaagcccgac
     2281 cttaagggag ggcgtaaacc gtaggttcag atgcgccccc ttaaggtcgg gcttccgcct
     2341 tctttacggc cgtccacttc tttgaaaaag tttatgaagc ctcgaaatct cctgaaacct
     2401 tgggtggtgg tcgctcgtct aacaaggcgc ttaaggaaca gtggttgagc ccacgtcggt
     2461 ctttcagggt cagcctcgcc cgtacggaac ggatacgaaa aatacagtta attggacact
     2521 cccaccctgc gggagcactt cggacagtta tgattaaaaa ggccctgcac cttgccgccc
     2581 tcttcgcgct cgcgctcaac tcgctcgccc tagccccgct cccggcgcgt gcccagcagg
     2641 tggcctcgaa ctcccggccg cgcacgaccg cgccgggcgg gacggccggc tcgccgctgc
     2701 tcaagcgcat ggcccttcgt gccgaggaga cggccgaagg cacgcgcgtc cgcgtcgctt
     2761 ccgacgcgcc cgttgacggc tacgaggctt acgccgaggg cggccgcttc gtcgtcttga
     2821 taccgcaggc gagcgccgcg gcgctcccga ccgaagggct cgcggggcgc ggcttcgagt
     2881 cgttgacggc agagcagcgc ggccacgacg ccgtgctcct gttcacgccg aggcagggct
     2941 tcgcgccgcg cgtgcgcgcc agcttcaacc gcctcgacgt gctcttcgtc gcgcagcagt
     3001 cgggcggctc cggcgccgag accgcggcga ccgcaacgcc cacgccctcg cccgtgccgg
     3061 cgccgccgcc ctcctcgacg gccgcgcccg ccgacggcga cccctcgaag gcgccgctca
     3121 cgcccgccgt gcccacgagc gaggcggcca agtcgaacct gaacccgccc gcgacgaagg
     3181 cggcgcgcct cgccgcgctg ctcactcccg agaaggctaa ccccgtcacc atacccaaga
     3241 cggagaaggc gccggtgatt gacggcaagc tcgacgacga ggtctggaag tcggccgccg
     3301 tcttcaagga cttcatacag taccgcccgg aagacctggt cgcgccgacg aagcagaccg
     3361 aagcctacat cacctacgac gcgaagttcc tctacgtcgc cttcaaggcg ttcgacgaga
     3421 aggacaaggt tcgagccacg gtcgccaagc gcgacgccgt cttcgacgac gactgggtcg
     3481 gcatctggct cgacaccttc aacgacggcc gccgcgccta cgagctcatc ttcaaccccc
     3541 tcggcataca ggccgacgcc atattcaccg agggcatcaa cgaggacttc agcgttgaca
     3601 tcgtccacga gtcgaagggc tcgatcacgg acgacggctt cgtcgtcgag gtagcaatcc
     3661 cgttcaagtc tctgcgctac acggcgggca aggacaagaa gtggggcctg cacctgctgc
     3721 gcaccatcaa gcgcttcaac aacgagcaga gcacgtggat gcccatctcg aaggacaact
     3781 cgagcctgct cgggcagagg ggctacatca cgggcctcga aggcgtctcg gccgagcgca
     3841 cgctcgagat aatcccgagc ttcacggcgt cgcagacggg ccagagagtc aaccgcccca
     3901 tccccggcgc ccccgacgcg cgcgccttca cgcccgttga ccgcatgctc aacaagcccg
     3961 tcgagttcga cctcggcgtc acgtcgaagt tcaccatcac gccgcagata acgctcgact
     4021 tcacctacaa ccccgacttc gcgcaggtcg aggccgacgc gaccgtggtg actgccaacc
     4081 agcgcttccc catcttcttc gaggagaagc gccccttctt cctcgaaggc aaggagatat
     4141 tcgagacgca gatcagcgcc gtccacacgc gcaccatcgt tgaccccgac tacgccgtga
     4201 agctgacggg caagcagggc cgcaacacct tcggcgtgct cctcgcctca gacccgaacc
     4261 ccggccgcct gaccgacgac gagctcgact tcctcaagcg cacggagggc gagcgcggcc
     4321 tctccgactc agaccgcgcg cgccgcaacg ccctgctcgg catattcgac aagaacgcca
     4381 cggtcggcat cctccgcctc aagcgcgacg tgggcaagga gagcttcatc ggcttcctcg
     4441 gcaccagcta cgacttcctc gaccgccaca accaggtcgc cggcttcgac tcgcgcttcc
     4501 gcctgaacaa gacgacgacg ctttcggcgc aggtcttggg cagcacgacg caggcgccct
     4561 tcttcttcgc cgaggaggcg cgcaccgacg accggcgcgt cagcggcatg gcctactccg
     4621 tctatctcaa caacagcggg cgcaactggg gctacgagct cggctcgacg ggccgctctc
     4681 gcttcttccg cgccgacgtg ggcttcaacc gccgcttcga cactaacaat ccgaccttct
     4741 tcgcgcgcta caactcggac gagaagccga aggccgcgat agtcgcttgg cgcgtctata
     4801 acttcatggg gtcgaacttc gactggcgcg ggcgcgggca gcgcttcgtc aacgagtcgc
     4861 agctacagct ccgcatgcag cgccagacct tcatcggcat cggcttcgag aagggcttcg
     4921 agcgcgtctt cgaggacgag ttcggcggca cgcgcgaggc catcggccgc cagacggtcg
     4981 agaccttcgc gccgctcatc gggcgggagg ccgcgtcggc gctgtccccc tgcgacccga
     5041 caggcttcac ggcgcccgtc atccccgacg accccacgac gcccgacgtg aacgaggagc
     5101 gacggctcgc gcgctgcacc ttcgcggggg cggccaccga gcgcagggcc gaccgcacca
     5161 acctctacgg ctacttcgag accgtgcctt cgaagaagta cgccttcttc atgttcacct
     5221 cgtacaactg gggcgtgctc gacttcgact tcggctcggg cagcccgcgc tacccgcgca
     5281 taagcccggc ggcgctcgcc gcccggcagg tgggccgcaa cgcgccgcaa gaccccggcg
     5341 ccggcaacga gttctactgg gagtcaacca tacgctacaa gccgacggac gccatcaact
     5401 tgtcgctctt ctacgtcaaa gaccgcctga cccgcagcga cacgggccgc gtcgccttcg
     5461 acgacaacat cttcacgctg cgcggcacct accagttcac gcgcttctgg ttcgcgcgcg
     5521 cccgcgttga ctactcgacg ctcgcctcgc gcgtgcgcat gcaatacctc ctgggctggg
     5581 cgccgaaccc cggcacctcc ttctacgccg gctacaacga cgacctcaac cgcaacggct
     5641 tcagcccatt cacgggcgag ctagagcccg gcttccgccg aaacggccgc accttcttca
     5701 tcaaagcctc ctacctcttc cgcaagagct tcgggaactg aagggcgccg acccgtagga
     5761 gagactgagg gggccgacgg tttgactccg tcggcccttc cgtcttttga cgattcacgc
     5821 cgcaggattt acgattagct cccaactctc tgagaccttt ccgaccgaaa gaggagccca
     5881 accgatgaga aagtttttga cccttgcctg cgccgccctg ctgctcgcgt caaacgtgct
     5941 cgggcaggga ggcggggcga caattgtgcc gggcgacaac ctcgtcgtcg agggcgtgcc
     6001 ggccatcccg gcctcgctcg ccgaggaggt gaggcgctac acggagttcc gctcggcggg
     6061 cctagccggc tggcaccccg cgcggcgcga gatgctcata ggcacgcgct tcggcgacac
     6121 caaccaggtt cacctcgtca agacgcccgg cggcgcgcgc acgcagctca ccttcttccc
     6181 cgaccgcgcc ggggccgtcg gcttcaggcc gaagaccggc gactacttcg tcttcaacaa
     6241 ggacaccggc ggcaacgagt tctaccagta ctaccgctac gacgtggcga cgggcgacgt
     6301 gacgctcctg acagacggca agtcgcgcaa cactagcgcc gactggtcta acggcggcga
     6361 gtggctcgcc tacagctcga cgcgccgcaa cggccgcgac aacgacatcc ttctggtcaa
     6421 ccccgcgcgg cccgacacga cgcgcgtgct cgcccagaac gagggcgggg gctggggcgc
     6481 gtccgactgg tcgcccgacg acaagcaact cctcgtcgtc gagttcctct cagccaacga
     6541 gagctacctc tggctcattg acgccgcgac cggcgccaag accctcgtca cgccgaaggg
     6601 cggcgccgaa aaggtctcct acggcggcgg cgagttcagc cgcgacgggc gcggcctcta
     6661 cgtcacgacc gaccgcggct ccgagttccg ccgcctcacc tacctcgacc tcgcgacgaa
     6721 ggagcacacc tacctcaccg accacatcaa gtgggacgtt gactcgttcc gcctctcgcc
     6781 cgacggccgc agcatagcct tcgtcacgaa cgaggacggc gtcgggcgcc tgcgcctgct
     6841 cgacacgcgc actcgaaagg agctgccggc tccacggctt cccgtcgggc tggtcggcgg
     6901 gctcaactgg cacgagaacg ggcgcgactt ggggtttaac ctctcgtcgg cgcgctcgac
     6961 ctccgacgtt tactcgctcg acgttcgcac cggcaaagtc gagcgctgga cggagagcga
     7021 gacgggcggc ctcaacacct cgcagctccc cgagcccgag ctcatcaagt ggaagagctt
     7081 cgacgggcgc gagatgagcg gcttcctcta catgccgccc gcgcgctaca acggcccccg
     7141 gcccgtcatc atcaacatac acggcggccc cgagggccag gcgcggcccg gcttcatcgg
     7201 gcgcaacaac tatttcctga acgagatggg cgtcgccatg ctcttcccga acgtgcgcgg
     7261 ctcgtccggc tacggcaaga ccttcctcca gctcgacaac ggcttcaagc gcgaggacac
     7321 ctacaaggac ataggcaccc ttctcgactg gatagccgtg cagccgcggc tcgacaagga
     7381 gcgcgtga
//
LOCUS       DASPKR010000661         7153 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_623066, whole genome shotgun sequence.
ACCESSION   DASPKR010000661 DASPKR010000000
VERSION     DASPKR010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7153)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7153
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_623066"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1182)
                     /locus_tag="VD968_17570"
     CDS             complement(<1..1182)
                     /locus_tag="VD968_17570"
                     /inference="COORDINATES: protein motif:HMM:NF013015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4113 domain-containing protein"
                     /protein_id="HYE16252.1"
                     /translation="MAHGFALIDCNDFYVSCERAFDPALRGRAVVVLSNNDGCVISRS
                     EEAKAAGIRMGAPLFEAARAVEEHGVEVFSSNYSLYGDMSGRLFEVLEGFTPEIERYS
                     IDEAFLRVEATCEGKAREAADAMRERILKWTGLPVTVGVGPTKTLAKLAARVAKRSER
                     ARGFVNLTSPVYLKEALARVRVEDVWGVGPARARVLRGAGVATALDFSRADEHWARAR
                     LGVVGARILNELRGVPCLPLEIAPRPRRSVTSSRSFGRPVVALAELCESVAFHVTRAA
                     EKLRRAGLAATALLVFVETGRFSRGPQHSGSASAALPVPTALITELVAYARACAERAY
                     REGFEYKKAGVMLLDLVPESPAQAGLFDARDRERHRRVMRAVDEINRLMGRGTVRTAA
                     EG"
     gene            complement(1222..1662)
                     /gene="umuD"
                     /locus_tag="VD968_17575"
     CDS             complement(1222..1662)
                     /gene="umuD"
                     /locus_tag="VD968_17575"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF012920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HYE16253.1"
                     /translation="MMQSYANVEAVLWPDCSTKWARPLVSASVSAGFPSPAEDYVEGR
                     LDLNRYLIKHPVATFYVRVSGDSMQGAGIDPGSILVVDRAVEADDGDIVIARIGDELC
                     VKRLRIHEGRIWLMPENDGYQPIEVIEGMDFEVWGRVMHAIRSY"
     gene            complement(1837..1989)
                     /locus_tag="VD968_17580"
     CDS             complement(1837..1989)
                     /locus_tag="VD968_17580"
                     /inference="COORDINATES: protein motif:HMM:NF023180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3309 family protein"
                     /protein_id="HYE16254.1"
                     /translation="MTTVLIIILILLLIGAAPAWPYSRGWGYYPSGLLGLILLIIIIL
                     LLTGRL"
     gene            complement(2100..2537)
                     /locus_tag="VD968_17585"
     CDS             complement(2100..2537)
                     /locus_tag="VD968_17585"
                     /inference="COORDINATES: protein motif:HMM:NF023075.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group I intron-associated PD-(D/E)XK
                     endonuclease"
                     /protein_id="HYE16255.1"
                     /translation="MSTNNVGNISEAAVLGAYMRAGFYVSVPFGNGCAYDLIVDTGER
                     LLKVQVKTGWLCKGCLLFKGRRRIRDSKQNGMRKYRKGEVDYFAVYYPPAGAIYVVPL
                     GVMGVDGCLRLEPVLNGQQKFIRWAADYTWERHVEELLREGAL"
     gene            complement(2615..2688)
                     /locus_tag="VD968_17590"
     tRNA            complement(2615..2688)
                     /locus_tag="VD968_17590"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2652..2654),aa:Arg,seq:cct)
     gene            complement(2740..3261)
                     /locus_tag="VD968_17595"
     CDS             complement(2740..3261)
                     /locus_tag="VD968_17595"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: protein motif:HMM:NF002634.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HYE16256.1"
                     /translation="MDHLKSLIREVPDFPKPGINFYDITTLLKSPEGLRGCVDALAEQ
                     FKGSGVDTVVGIEARGFIFAPAMAYHLGAGFVPARKPGKLPSECASISYDLEYGQDAL
                     QIHRDAVGSGHRVVIADDLLATGGTARAVVDLVEQLGGHVVGLAFVVELEFLPGRKKL
                     EGYDVRSLIKYQS"
     gene            complement(3264..3539)
                     /locus_tag="VD968_17600"
     CDS             complement(3264..3539)
                     /locus_tag="VD968_17600"
                     /inference="COORDINATES: protein motif:HMM:NF012911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HYE16257.1"
                     /translation="MKVARRYLVSGDVQGVGYRFFAQRVAARHQVTGYVRNLPDGRVE
                     ALAEGSPEGIEGFKHDLAAGPQWARVEQVEEVNVEPTGQYPAFRIER"
     gene            complement(3605..6373)
                     /locus_tag="VD968_17605"
     CDS             complement(3605..6373)
                     /locus_tag="VD968_17605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16258.1"
                     /translation="MPKRLERILAALLLSSASLCPALTQVAATTKPSAASSLHAEYLW
                     LEAENMSGVSVDERNEPHVNPSWMNRPRSAAPGWGMNGPGVSAEWSQGGESEWNSVAA
                     SADETRAVLYQEIEIPRDGEYRVWARYADWARRSENFVVRISQQDREVFRREFGAADV
                     IDPSDEVSMYWGWAFAWDGAPAALKKGRARLSVEVERAADARRHVDCLLVTNDLAYRP
                     EGRRKPPFAAQRYLREWAGKRPPLSPLFERETAGAKTPAAWRRAPLAGRDFQMPWNIA
                     EQFWPMYDEPAESRPLFPFNAEPVEAFVEKYKGARDVPLFSSKLVVPVIYINNLHKHL
                     KEGTPFLRYLRETRTPFAVLINYGEARFPDGEGQEAFRLLTGELREQFLGWISGESIG
                     HVWPAVSASTKFSPESSRAQLLEAHRAAYTLALEQKWRGMFQGAQTGAMWDRLIPAQS
                     TSSTTYAHALARWGVRTLGMETAAVQPVTAMRIAFTRGAARQYGANFLYYHAPNFGDT
                     ATTFTASQNFAGPAHFFHTRYGATMGPSLSWYRKNYFLYYMAGASAVYLEQGFDQFFK
                     PGPGEHPFQLNPLGRITEEFMRFAERHPDRGTPYTPVAFLLDPAHGFEMTDWPHYPFG
                     VSPPGRHDHAIRELMLAAYYPAAADEGEPATADRQAFTNAAFGDIFDVLVASEEGAEA
                     ADSYRAVVVGGRVNWSPAWAAKLAAYVRAGGTVFVNAAQTKGLPAELLGVRPMNAEAE
                     ADDADCAAQGEAAAELAGQVFRYERVEPRGAQALIKAPNGDAVVTVNRLGRGRVVFCA
                     VPDLLGLDGRLVPAAAHALAHLFADATPVNVSGDVEHLVNRNERGWVVTLINNRGVYK
                     PQQGLAQVNRDEWADVTLDLRGSDLARASEWTTGSELKIEGDAPRRLVRVRVPAGGVR
                     IVELVPRG"
     gene            complement(6445..>7153)
                     /locus_tag="VD968_17610"
     CDS             complement(6445..>7153)
                     /locus_tag="VD968_17610"
                     /inference="COORDINATES: protein motif:HMM:NF018484.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HYE16259.1"
                     /translation="DEAPEQRAALPRQFVTFTFYKARPEWRSLSAAEKDEAKRELVGL
                     FGSYRRDLLIHTYSIVGLRSNVDFMVWRIGYSLDPFQEMSARINGTALGRYLDVTQSF
                     LSMTKRSMYIDKDNPEHVEDRLHIVPGRSKYLFVYPFVKTREWYALPVEQRQEMMDEH
                     IRVGSKYRSVKLHTTYSFGLDDQEFVVAFETDTPSDFLDLVQELRESKASRYTLRDTP
                     MFTCRQMPLEECLDAIG"
BASE COUNT         1168 a         2355 c         2426 g         1204 t
ORIGIN      
        1 cccctcggcg gccgtccgca ccgtgccgcg gcccatgagc ctgtttatct cgtccaccgc
       61 gcgcatcact ctccggtgcc gctcgcggtc gcgcgcgtcg aacagtcccg cctgcgcggg
      121 cgactccggc accaggtcta agagcatcac gccagccttt ttgtactcaa agccctcgcg
      181 gtaagcgcgc tccgcgcagg cgcgcgcgta agccacaagc tccgttatca aggcggtcgg
      241 gacgggcagc gcggcggagg ccgagcccga gtgttgcggc ccgcgcgaga agcggcccgt
      301 ctcgacgaag acgagcagcg ccgtcgccgc gagccccgcc cgccgcagct tttcggcagc
      361 gcgcgtgacg tggaaggcga ccgattcgca aagctccgcg agcgcgacga cggggcggcc
      421 gaacgacctc gaagaagtga cgctccttcg cggccgcggg gctatttcga gcggcaggca
      481 cggaacgccg cgcagctcgt tcaatatgcg cgcgcccacg acgccgaggc gcgcacgcgc
      541 ccagtgctcg tccgcgcgcg agaagtcgag cgcggtcgcc acgcccgccc ccctcagcac
      601 gcgcgcacgc gccggcccca cgccccaaac gtcctcgacg cgcactcgcg cgagcgcctc
      661 cttcagatag accgggctcg tgaggttgac gaagccgcgc gcccgctccg accgcttggc
      721 gacgcgcgcg gcgagcttcg ccagagtctt cgtcggcccg acgccgacgg tgacgggcag
      781 ccccgtccac ttcaggattc tttcccgcat cgcgtcggcc gcctcgcgcg ccttcccctc
      841 gcacgtcgcc tcgacgcgta ggaaggcttc gtcaatcgag tatcgctcta tctccggcgt
      901 gaagccttcg agcacctcga agaggcgccc agacatgtcg ccgtagagcg agtagttcga
      961 cgagaagacc tcgacgccgt gctcctcgac cgcccgcgcc gcctcgaaca gcggcgcccc
     1021 catccttatc ccggccgcct tcgcctcctc cgagcgcgag atgacgcagc cgtcgttgtt
     1081 cgacagcacg acgaccgcgc gcccgcgcaa ggcggggtcg aacgcacgct cgcacgacac
     1141 gtaaaagtcg ttgcagtcta tgagcgcgaa gccgtgcgcc atgaaagtcg gaggcgtcgg
     1201 cgcgcccgac gcatccctcc gtcagtaaga gcgtatggcg tgcataacgc ggccccagac
     1261 ctcgaagtcc atcccctcta taacctcgat gggctggtag ccgtcgttct ccggcatgag
     1321 ccatatgcgc ccctcgtgta tgcgcaggcg cttgacacat agctcgtcgc ctatgcgggc
     1381 gatgacgatg tcgccgtcgt cggcttccac cgcgcggtca acgacgagga tggagccggg
     1441 gtcaatcccc gcgccctgca tcgagtcgcc cgagacgcgc acgtagaagg tcgctacggg
     1501 gtgctttatg aggtagcggt tgaggtcgag ccggccctct acgtagtcct cggccggcga
     1561 ggggaagccg gccgagaccg aggccgagac gagcggccgc gcccacttcg tcgagcagtc
     1621 gggccacagc acggcctcga cgttcgcgta agattgcatc atttgtgttt cacccgtggt
     1681 tgaatgtgcc aacgacggga ttctagcggg agcgggcggg ggattacaag agtttttttc
     1741 gggaatgaat ctcggggcgc ggggcgcgcc tacggcgggc gtcgcccgcg gcgcaaggcc
     1801 ccgggcgacg atgcgcgtgc agcctggctc cggcgctcag aggcgcccgg tcagtagcag
     1861 tatgattatg atgagcagta tgaggccgag caagccgctc gggtagtagc cccagccccg
     1921 gctgtagggc caggccggcg ccgccccgat gagcagaagg atcaggatga tgataagaac
     1981 ggttgtcacg ccgccctcct ttccggactg tctcttgaaa tgggtttccc tgcgactgag
     2041 ttttataaca ccccgcctcg ccggtcaaca tttaaattcg ggggggggcg gggccggcct
     2101 taaagcgccc cttcacggag caactcctct acgtgccttt cccaggtgta atccgccgcc
     2161 cagcgtatga atttctgctg gccgttcagc acgggctcga gcctgagaca tccgtccacg
     2221 cccatcacgc ctaacggcac aacgtaaata gccccggccg gcgggtagta aacggcgaag
     2281 taatcaacct cgcccttcct gtactttctc atcccgtttt gttttgagtc tctaatgcgt
     2341 cgccgcccct tgaagagcag gcaccctttg cacagccacc ccgttttgac ctgcaccttt
     2401 agcaaccgct cgcccgtgtc aacgataagg tcgtaagcgc agccgttgcc gaatggcacg
     2461 gagacgtaga agcccgccct catgtaagcc ccgaggacgg cggcctcgct gatgttgccg
     2521 acattgtttg tggacatgtc ttcccctcct ctcacacaaa gagtttgagg cgaaagggat
     2581 cgcgggtgtg ttaattgggt gggatgtggt tgagtgctcc cggctggatt ccaaccagcg
     2641 gcctatccct taggagggga tcgctctatg cagctgagct acgggagcac aacgctgtag
     2701 aagttagcag acgggcgggc ggcgagtcca gccgttgggt caggactggt acttgatgag
     2761 cgagcgcacg tcgtagcctt ccagcttctt gcggccgggg aggaactcca gctcgacgac
     2821 gaaggcgagg ccgactacgt gacctccgag ctgctcgacg aggtcaacga cggcgcgggc
     2881 cgtgccgccg gtggcgagaa ggtcgtcggc tatgacgaca cggtggccgg agccgacggc
     2941 gtcgcggtga atctgtagcg cgtcctggcc gtactccagg tcgtaagaga tggaggcaca
     3001 ctcggaaggg agcttgccgg gcttgcgagc ggggacgaag cccgcgccga ggtggtaggc
     3061 catcgcgggc gcgaagatga agccgcgcgc ctcgatgccg acgacggtgt caacgcccga
     3121 gcccttgaac tgctcggcga gcgcgtccac gcacccgcgc aggccctccg ggctcttgag
     3181 aagcgtcgtt atgtcgtaga agtttatgcc cggcttcggg aagtcaggca cctcgcgtat
     3241 gagcgacttg agatgatcca ttgttatctt tcgattctga aggccgggta ctggcccgtg
     3301 ggctcgacgt tgacctcctc gacctgctcg acgcgcgccc actgggggcc ggcggcgagg
     3361 tcgtgcttga agccctcgat gccttcgggc gagccctcgg cgagggcctc gacgcggccg
     3421 tcggggaggt ttcggacgta gcctgtaacc tggtggcgcg cggccacgcg ctgcgcgaag
     3481 aagcggtagc cgacgccctg cacgtcgccg ctcactaagt accgccgcgc gactttcatc
     3541 ccaagccccc tcgccgttaa gtcaggacgg gctatcctaa agtaaacgcg gcggggaatg
     3601 caattcaccc gcgcggcacc aattccacta tgcgaacgcc gcccgccggg acgcgcactc
     3661 tcacgagccg gcgcggcgcg tcgccctcga ttttcagctc cgagcccgtc gtccactcag
     3721 aggcgcgcgc gaggtcagag ccccggaggt ctagcgtaac gtcggcccac tcgtcgcggt
     3781 tgacctgcgc gaggccctgc tgcggcttat agacgccgcg gttgtttatg agggttacga
     3841 cccagccgcg ctcgttgcgg ttgacgaggt gctccacgtc gcccgagacg ttcacgggcg
     3901 tcgcgtcggc gaagaggtgc gcgagcgcgt gggctgcggc ggggacgagg cggccgtcga
     3961 gccctagtag gtcggggacg gcgcagaaga cgactcggcc gcgcccgagc cggttgacgg
     4021 tgacgacggc gtcgccgttc ggggctttta tcagagcctg cgcgccgcgc ggctctacgc
     4081 gctcgtagcg gaagacctgc ccggccaatt ccgccgccgc ttcgccctga gcggcgcagt
     4141 ctgcgtcgtc ggcctcggcc tcggcgttca tcggcctaac gccgagcagt tcggccggca
     4201 gccctttcgt ctgcgccgcg ttgacgaaga ctgtaccgcc cgcccgcacg tatgcggcga
     4261 gcttcgcggc ccaggcgggt gaccagttga cgcgcccgcc gacgacgacg gcgcggtacg
     4321 agtcggctgc ttcggcgccc tcttcggagg cgacgagcac gtcgaagatg tcgccgaagg
     4381 ccgcgttggt gaaggcctgt cggtcggccg tcgccggctc gccctcgtcc gcggcggccg
     4441 ggtagtaggc cgcgagcatc agctcgcgta tggcatggtc gtgacggccc ggcggcgaga
     4501 cgccgaacgg gtagtgcggc cagtccgtca tctcgaagcc gtgcgcgggg tcgaggagga
     4561 aggcgacggg cgtgtagggc gtgccgcggt cggggtggcg ctcggcgaag cgcatgaact
     4621 cttcggtgat gcggccgagc gggtttagct ggaacgggtg ctcgccgggg ccgggcttga
     4681 agaactggtc gaagccctgt tcgagataga cggccgaggc gccggccatg tagtagagga
     4741 aatagttctt cctgtaccac gaaagcgacg gccccatcgt cgcgccgtag cgcgtgtgga
     4801 agaagtgcgc ggggcctgcg aagttctgcg aggcggtgaa ggtcgtggcg gtgtcgccga
     4861 aattgggcgc gtggtagtag aggaagttgg ctccgtactg ccgcgccgcc ccgcgcgtga
     4921 aggctatgcg catggctgtc acgggctgca cggccgccgt ctccatcccc agcgttcgca
     4981 cgccccagcg cgcgagcgcg tgcgcgtagg tcgtgctcga agttgactgc gccgggatga
     5041 gcctgtccca catggcgccc gtctgcgcgc cctggaacat gccgcgccac ttctgttcga
     5101 gcgcgagcgt gtaggcggcg cggtgcgcct ccagcaactg cgcgcgcgaa gactcgggcg
     5161 agaacttcgt agaggccgag acggcgggcc agacgtggcc gatgctctcg ccggagatcc
     5221 acccgaggaa ctgctcgcgc agctctcccg tcaaaagccg gaaagcctcc tggccctcgc
     5281 cgtcggggaa gcgcgcctcg ccgtagttga tgagcacggc gaagggcgtg cgcgtctcgc
     5341 gcaggtagcg caggaagggc gtgccttcct tcaggtgctt gtgaagattg ttgatgtaga
     5401 tgacaggcac gacgagcttc gacgagaaga gcgggacgtc gcgcgctccc ttgtacttct
     5461 cgacgaaagc ctcgacgggc tcggcgttga aggggaagag cgggcgcgac tctgccggct
     5521 cgtcgtacat cggccagaac tgctctgcga tgttccaagg catctggaag tcgcggcccg
     5581 cgagcggcgc acggcgccac gccgcgggcg tcttcgcccc ggccgtttcc ctctcgaaga
     5641 gcggcgagag cggcggcctc ttcccggccc actcgcgcaa ataacgctgc gcggcgaagg
     5701 gaggcttccg gcgcccctcg ggcctgtaag cgaggtcgtt ggtgacgagc aggcagtcaa
     5761 cgtggcggcg agcgtcggcc gcgcgctcga cttcgacgct gaggcgcgcc cgccccttct
     5821 tcaacgcggc cggcgcgccg tcccaggcga aggcccagcc ccagtacatg ctcacctcgt
     5881 cgctcgggtc aatcacgtcc gcggcgccga attcgcggcg gaagacctcc ctgtcctgct
     5941 ggctgattct gacgacgaag ttctcgctac gccgcgccca gtcggcgtag cgcgcccaga
     6001 cgcggtattc gccgtcgcgc gggatttcta tctcctgata gagcacggcg cgcgtctcgt
     6061 ctgcgctcgc cgctacggag ttccactcgc tctcaccgcc ctgcgaccac tcggcagaga
     6121 cgccggggcc gttcatgccc cagcccggag cggccgagcg cgggcggttc atccaggagg
     6181 ggttgacgtg cggctcgttg cgctcgtcaa cggatacgcc gctcatgttc tcggcctcca
     6241 gccagaggta ctcggcgtgc agcgacgaag cggctgacgg cttcgtcgtt gcggcgacct
     6301 gcgtgagcgc cgggcagagg gaggccgacg agaggaggag cgcggctaag atgcgttcga
     6361 gtcgtttcgg catggctctc gtgaagcaaa aagggagagc ttagaaaaac tctcccttag
     6421 cgccaaactt cttctctacg gagttcaccc gatggcgtcg aggcactctt cgagcggcat
     6481 ctgccggcag gtgaacatgg gcgtgtcgcg cagggtgtag cggcttgcct tcgactcgcg
     6541 caactcctgc acgaggtcga ggaagtccga cggagtgtct gtctcgaagg cgacgacgaa
     6601 ctcctggtcg tcgaggccga acgagtaggt cgtgtgcagc ttcaccgagc ggtacttcga
     6661 gccgacgcgg atgtgctcgt ccatcatctc ctgccgctgc tcgaccggca gcgcgtacca
     6721 ctcgcgcgtc ttgacgaagg gatagacgaa caggtacttc gagcggcccg gcacgatgtg
     6781 caggcggtct tcgacgtgct cggggttgtc cttgtctatg tacatcgagc gcttcgtcat
     6841 cgagaggaag ctctgcgtca cgtcgaggta gcggccgagc gccgtgccgt ttatgcgcgc
     6901 cgacatctcc tggaacgggt cgagcgagta gcctatgcgc cagaccatga agtcaacgtt
     6961 cgagcgcagg cccacaatcg aataggtgtg tatgagcagg tcgcgccggt acgagccgaa
     7021 cagcccgaca agctcgcgct tggcctcatc cttctcggca gcgctgagcg agcgccactc
     7081 gggcctcgcc ttgtagaagg tgaaggtgac gaactggcgc gggagggcgg cgcgctgctc
     7141 cggcgcctcg tcc
//
LOCUS       DASPKR010000662         2837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_361434, whole genome shotgun sequence.
ACCESSION   DASPKR010000662 DASPKR010000000
VERSION     DASPKR010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2837)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2837
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361434"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1050)
                     /locus_tag="VD968_17615"
     CDS             complement(<1..1050)
                     /locus_tag="VD968_17615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16260.1"
                     /translation="MSAAGDPVESVGARRRPRRRRARILLALVVLLALSQAPFAYRRY
                     QLGRLRARIAEANSRRAPAPLDDDFGDHAGVFHVHSSLGGHTTGRPEEIVSAARANGL
                     AFVVMTEHPASHVNTAEATLKGEHEGVVFINGSELVARGGERLFVAPGFDRQPPEAES
                     VSLQQLINLAATENRLALVAYPGQVRDWRLDGYDGLEVYNLYTDARDASFARLFFDGL
                     WSYWSYPELLFVTFYDRPAANLSKWDELNAAGARRSAVAGNDAHANVGLSLGGREGES
                     LFSFRLDPYERSFRIVRNHVLLPKGERPTAENVLAALRRGRSYMAFDLFCDSSGFRFA
                     AEAGAARASMGEEVTL"
     gene            complement(1047..1352)
                     /locus_tag="VD968_17620"
     CDS             complement(1047..1352)
                     /locus_tag="VD968_17620"
                     /inference="COORDINATES: protein motif:HMM:NF019491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dabb family protein"
                     /protein_id="HYE16261.1"
                     /translation="MLTHIVIWKYKAEAGEGARREHVERLRALPAHIPEIESFAVGTD
                     VLRLARSYDTGLVAVFRDLAALDVYTNHPEHLAVVALGKEISAHVASVDFLDEETNA"
     gene            complement(1346..>2837)
                     /locus_tag="VD968_17625"
     CDS             complement(1346..>2837)
                     /locus_tag="VD968_17625"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HYE16262.1"
                     /translation="AGHAPPLGDMSPEEFRRFGREMVDWVADYLAHVGRLPVLAQVRP
                     GELRSQLPQSPPERGEPMPEIVADVDRLITPALTHWNHPSFFAYFATSASAPGILGEL
                     LAAAFDAKAMLWRTSPASTELEEVALDWLRQMTGLPREFEGIIYDTASVATMHAVAAA
                     REALGLRIREEGMSGRADLPPLRLYASEQSHSSVEKSLIALGLGQSSLRKVPADDEFR
                     MSSAALARMVKADRERGDLPFCVVATVGTTSTTSVDPVSAIADVCEHEGLWLHVDAAY
                     AGSAAVVPELRQHFEGCERADSLVTNPHKWLFTPFDLSALYSRRLDVLRRAFTLTPEY
                     LRTAEAGEVRNGSDYGVQLGRRFRALKLWMIIRYFGREGLAARIREHCRLARLFASWV
                     EESADWELLAPVPFSVVCFRARNRAEGEAEDERTARQDSLNERLMNAVNATGKIFISH
                     TKLRGVLTLRLAVGNIRTTEEHVARAWRLLNEQLAAVSKGEGGRGC"
BASE COUNT          440 a          928 c         1031 g          438 t
ORIGIN      
        1 tagcgtgacc tcttcgccca tcgaggcccg cgcggcgccg gcctcggccg cgaagcggaa
       61 gccggaggag tcgcagaaga gatcgaaggc catatacgag cgcccgcgcc ggagcgccgc
      121 cagcacgttc tccgccgtcg gtcgctcgcc cttcgggagc agcacgtggt tgcgcacgat
      181 gcggaagctc cgctcgtaag ggtctagcct gaaggagaag agactttcgc cttcccggcc
      241 gccgaggctc aagccgacgt tcgcgtgcgc gtcgttgccg gcgacggccg agcggcgtgc
      301 gcccgcggcg ttcagctcgt cccacttcga gaggttcgcg gcgggcctgt catagaaggt
      361 cacgaagagg agttccgggt agctccagta agaccatagg ccgtcgaaga agaggcgcgc
      421 gaagctcgcg tcgcgggcgt cggtgtagag gttatagacc tccagcccgt cgtagccgtc
      481 gagacgccag tcgcgaacct gcccggggta ggcgacgagc gcgagacggt tctccgtggc
      541 cgcgaggttg atgagctgct gaaggctcac cgactcggcc tcgggcggtt gccggtcgaa
      601 gccgggcgcg acaaataaac gttccccgcc gcgcgcgacc aattcgctcc cgttgatgaa
      661 gacgacgcct tcgtgctcgc ccttcagggt cgcctcggcc gtgttgacgt gcgaggccgg
      721 gtgctcggtc atcacgacga aggcgaggcc gttagcgcgg gcggcgctga ctatctcttc
      781 gggcctgccc gtcgtgtggc cgccgagcga ggagtgcaca tggaagacgc cggcatggtc
      841 gccgaagtcg tcatcgagcg gggcgggcgc gcgccgtgag ttggcctccg cgatacgcgc
      901 gcgcagtcgg cctagctgat agcgcctgta cgcgaacggc gcctgcgaga gcgccagcag
      961 cacgacgagc gcgagcagga tgcgcgcccg ccgccttcgg ggtcggcgcc gcgcgcccac
     1021 gctctcgaca ggatcgccgg ctgcgctcaa gcgttcgtct cttcgtcgag gaagtcaacg
     1081 gaggccacgt gcgcgcttat ctctttgccg agcgcgacga cggcgaggtg ctcggggtgg
     1141 ttcgtataaa cgtcgagcgc ggcgaggtcg cggaagactg cgacgaggcc cgtgtcgtag
     1201 gagcgcgcga ggcgcagcac gtccgtgcct acggcgaagc tctcgatctc ggggatgtgc
     1261 gcgggcaggg cgcgcagccg ctcgacgtgc tcgcgccgcg cgccctcgcc ggcctccgcc
     1321 ttgtacttcc agatgacgat gtgcgtcagc atcctctccc tccctctcct ttcgagacgg
     1381 ccgcgagctg ttcgttgagc agccgccacg cgcgtgcgac gtgctcttcg gtggtgcgta
     1441 tattcccgac ggcgaggcgg agtgtgagca cgccgcggag cttcgtgtga gagatgaaga
     1501 ttttgccggt ggcgttgacg gcgttcatga gccgctcgtt cagagagtcc tggcgcgctg
     1561 tcctctcgtc ttcggcctcg ccttcggcac ggttgcgcgc gcggaagcag acgacgctga
     1621 aggggacggg cgcgagcagc tcccagtcgg cagactcctc gacccacgag gcgaacagtc
     1681 gtgccagtcg gcaatgctct cgtattcgcg cggccaggcc ctcgcggccg aagtagcgga
     1741 ttatcatcca tagcttgagc gcgcggaagc ggcggccgag ctgcacgccg tagtcggagc
     1801 cgttgcgaac ctcgcccgcc tcggcggtgc gcaggtactc gggcgtgagc gtgaaggcgc
     1861 ggcggagcac gtcgagcctg cgcgagtaga gggccgacag gtcgaagggc gtgaagagcc
     1921 acttgtgcgg gttggtgacg agcgagtcgg cgcgctcgca accctcgaag tgctggcgaa
     1981 gctcggggac gaccgccgcc gagccggcgt atgccgcgtc aacgtggagc cagagcccct
     2041 cgtgctcgca cacgtcggcg atagcagaca cggggtcaac gctcgtcgtc gaggtcgtgc
     2101 cgaccgtcgc gacgacgcag aagggaaggt cgccgcgctc gcggtcggcc ttgaccatgc
     2161 gcgcgagcgc cgcagagctc atgcggaact cgtcgtccgc gggaactttg cgcagggagc
     2221 tttgcccgag cccgagcgcg atcagcgact tttcgaccga cgagtgcgac tgctcggagg
     2281 cgtagagccg gaggggcggg aggtctgcgc ggccgctcat cccctcctcg cgtatgcgca
     2341 ggccgagcgc ctcgcgcgcg gcggcgacgg cgtgcatcgt cgcgaccgac gccgtgtcgt
     2401 agatgatgcc ttcgaactcg cggggcagcc ccgtcatctg ccgcagccag tcgagcgcga
     2461 cctcctccaa ctcggtcgag gcgggcgagg tgcgccagag catcgccttc gcgtcgaagg
     2521 ccgcggccag tagctcgccc agtatgccgg gcgccgaggc agaggtggcg aagtacgcga
     2581 agaatgaagg gtggttccag tgcgtgagcg cgggcgttat gagtcggtca acgtctgcga
     2641 ctatctcggg catgggctcg ccacgctcgg gcggcgactg aggcagttgc gagcgcagct
     2701 cgcccggccg aacctgcgcg agcacgggca ggcggcctac gtgcgcaagg taatccgcga
     2761 cccagtcaac catctcgcgc ccgaagcgcc ggaactcttc cgggctcatg tcgccgagcg
     2821 gcggcgcatg gcccgcc
//
LOCUS       DASPKR010000663         2817 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_623790, whole genome shotgun sequence.
ACCESSION   DASPKR010000663 DASPKR010000000
VERSION     DASPKR010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2817)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_623790"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..939)
                     /locus_tag="VD968_17630"
     CDS             complement(<1..939)
                     /locus_tag="VD968_17630"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF013311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HYE16263.1"
                     /translation="MTKNLVVVESPAKAKTISKYLGPDYRVMASLGHVKDLPSKGLGV
                     DVEKNFEPTYEVIPDTKKRNNRKILSELKQAAKAADAIYLAADPDREGEAICQHLAEE
                     IVPKRPKKPSFRVMFNEITKRAVQDAFKEPKQIDQHLVDAQQARRVLDRLVGYKVSPL
                     LCRTIGGRLSAGRVQSVALRMVVEREREIERFVKTEYWTIAANLSAKLPPAFDARLFK
                     VGEQTVKTSNFDQDVKKSEILIGDEETARSLVAEAEAQRFVVSDVTTKERRRNPVPPF
                     ITSKLQQEASRKLGFPVKKTMMVAQKLYEGVELGAEG"
     gene            1277..1852
                     /locus_tag="VD968_17635"
     CDS             1277..1852
                     /locus_tag="VD968_17635"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE16264.1"
                     /translation="MTQSSPPEVTQLLKSWSDGDRSALEQLLPLVYRELHTLASRYLR
                     RERSDHTLQATALVNEAYLKLIDQKEVRWQNRAHFFGVAAQAMRRILVDHARGHMAAK
                     RGSGGVKLSIEDNEAAIVSSEKAEEMVALDEALTRLAEVDPQKSRIVELRFFGGLSIE
                     ETAEVLGIGTATVIRQWRMARAWLFDQVQKQ"
     gene            1982..>2817
                     /locus_tag="VD968_17640"
     CDS             1982..>2817
                     /locus_tag="VD968_17640"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HYE16265.1"
                     /translation="MSPERFKLVEEIFNQALDLPHEDRGEFLSDVCGGDASLRAEVEN
                     LLRADEEAGAFISEPAFDVRSVTGIEQQLSVQQQAAPEEDEAPMTGRIIGAYRVVREI
                     GRGGMGTVYLAVRADDAFNKRVAIKLVKRGMDTEFILKRFRNERQILASLDHPNIAHL
                     LDGGTTEDGLPYFVMEYIQGQPVERYCDNERLSIAERLKLFRLVCSAVHYAHQNLIIH
                     RDIKPSNILVTADGTPKLLDFGIAKILNPEIAIDTIDPTLTSMRMMTPKYASPEQLRG
                     GAA"
BASE COUNT          486 a          973 c          840 g          518 t
ORIGIN      
        1 gccctcggcg cccagctcga cgccctcgta gagcttctgc gccaccatca tcgtcttctt
       61 gacggggaag ccgagcttgc gcgaagcctc ctgctgcaat ttcgacgtga tgaagggcgg
      121 gacggggttc cggcggcgct ccttcgtcgt cacgtccgag acgacgaacc gctgcgcttc
      181 ggcctccgcg acgagcgagc gcgccgtctc ctcgtcgccg atgaggattt cgctcttctt
      241 aacgtcctgg tcgaagttcg aggtcttgac cgtctgctcg cccaccttga agaggcgcgc
      301 gtcgaaggcg ggcggcagtt tcgccgagag gttcgcggcg attgtccagt attcggtctt
      361 gacgaagcgc tctatctcgc gctcgcgctc gacgaccatc cggagcgcga ccgactgcac
      421 ccggcccgcc gaaagcctcc cgccgattgt tcggcaaagc agcggcgaga ccttgtagcc
      481 cacgagccgg tcgaggacgc ggcgggcctg ctgcgcgtca acgaggtgct ggtcaatctg
      541 cttcggctcc ttgaaggcgt cctgcacggc ccgcttcgtt atctcgttga acatcacgcg
      601 gaacgagggc ttcttcgggc gcttcgggac gatctcctcg gctaagtgct ggcagatggc
      661 ctcgccctcg cggtcggggt cggcggcgag gtagatggcg tcggcggcct tcgcggcctg
      721 cttcagctcg gagagaatct ttcggttgtt gcgcttcttc gtgtccggga ttacttcgta
      781 ggtcggctcg aaattcttct ctacgtcaac gcccagcccc ttcgacggca agtccttgac
      841 gtgcccgagc gaagccatca cgcggtaatc cggccccaga tatttgctta tcgtcttcgc
      901 cttcgcgggc gattccacga ccactaaatt tttcgtcatt acgcttcctt tattaaactc
      961 cgcggggccc gcgcgtcgct ccggcgcccg caccgtcctt ttttctaaaa gactacattt
     1021 tcaccttaga tgcaaacgcc cgcccgccgg agcgccgcca gggccggaga aatcaacaac
     1081 ttagccgccg cgccacgcat ctaacccctt cggccgaagc gcccccgggt gcgcccgcgc
     1141 tccgtccggc ggccgacgaa aatagcacca acggcggccc ggaagtcaaa tagcggacgg
     1201 cgtgcgcctc gcccgtttga cttggcacag agcaattttt atcctgtcgg cggagttttt
     1261 aaactcggcg atttttatga cccaaagctc ccccccggaa gttacgcagc tccttaagag
     1321 ctggagcgac ggcgaccgct cggcgctcga acagctcctc ccgctcgtct atcgcgagct
     1381 gcacacgctc gcctcgcgct acctccggcg cgagcgctcc gaccacacgc tacaggcgac
     1441 ggccctcgtc aacgaggcgt acctcaagct catagaccag aaggaggtgc gctggcagaa
     1501 ccgcgcgcac ttcttcggcg tcgccgccca ggccatgcgg cgcatactcg ttgaccacgc
     1561 ccgcggccac atggcggcca agcgcggctc gggcggcgtc aagctctcca tagaggacaa
     1621 cgaggcggcg attgtttcga gcgagaaggc cgaggagatg gtggcgctcg acgaggccct
     1681 gacgcgtctc gccgaggttg acccgcagaa gagccgcatc gtcgagctgc gcttctttgg
     1741 cggcctctcc atcgaggaga cggccgaggt gctcggcata ggcacggcca ccgtcatacg
     1801 ccagtggcgc atggcgcgcg catggctctt cgaccaggtt cagaagcagt gacgagtgac
     1861 aagcgggcgg cgacaagtta gaatcgctcc gcgaccgcgc cgtccgccgt tctcccgtga
     1921 actttctacg ctttcgtttt gacttgtcgc ccgaagcgcg tcacgcgtca ccgtttttcc
     1981 gatgtccccc gagcgtttta aattagtcga ggagatcttc aaccaggccc tcgacctgcc
     2041 tcacgaagac cgcggcgagt tcctctcgga cgtgtgcggc ggcgacgcct ctttgcgcgc
     2101 cgaggtcgag aacctgcttc gcgccgacga ggaggccggc gccttcatct ccgagcccgc
     2161 cttcgacgtt cgcagcgtca ccgggataga gcagcagctc tccgttcagc aacaggccgc
     2221 gcccgaggag gacgaggcgc cgatgacggg gcgcatcatc ggcgcttacc gcgtcgtgcg
     2281 cgagattggg cgcggcggca tggggacggt ctatctggcc gtgcgcgccg acgacgcctt
     2341 caacaagcgc gtcgccatca agctcgtcaa gcgcggtatg gacaccgagt tcatcctcaa
     2401 gcgcttccgc aacgagcggc agattctcgc ctcattagac cacccgaaca tcgcgcacct
     2461 cctggacggc ggcacgaccg aggacggcct gccctacttc gttatggagt acatacaggg
     2521 gcagcccgtc gagcgctact gcgacaacga gcggctctcg atcgcggagc ggctcaagct
     2581 cttccgcctc gtctgctcgg ccgtccacta cgcgcaccag aacctcatca tccaccgcga
     2641 catcaagccc agcaacatcc tcgtcacggc cgacggcacg cccaagctcc tggacttcgg
     2701 catcgccaaa atcctcaacc ccgagatcgc cattgacacc attgacccga cgctgacctc
     2761 aatgcggatg atgacgccga agtacgcctc gcccgagcag ctgcgcggcg gcgcggc
//
LOCUS       DASPKR010000664         3058 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_106891, whole genome shotgun sequence.
ACCESSION   DASPKR010000664 DASPKR010000000
VERSION     DASPKR010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3058)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3058
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106891"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..475)
                     /locus_tag="VD968_17645"
     CDS             complement(<1..475)
                     /locus_tag="VD968_17645"
                     /inference="COORDINATES: protein motif:HMM:NF017015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HYE16266.1"
                     /translation="MRETERIADQLRRAHEGGAWHGPSMKEILAGVTAEQAAARPFED
                     THSIHELVLHAAAWERAVLRRLSGDPAQIYDTPEDWPAAAETSEAAWAEALRELEETN
                     RALREAVIALDDNGPDEAIHPEMSSRYVTLHGVVQHTLYHAGQIALTKKALGGRTT"
     gene            complement(472..1101)
                     /locus_tag="VD968_17650"
     CDS             complement(472..1101)
                     /locus_tag="VD968_17650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16267.1"
                     /translation="MQKTLARLYTDAAVRERFFGDPLKVGRELGLDDAEASLLARLSA
                     SEVKRFSESLHNKRLSGVAKLLPLTQRALRGRFNAHFMRYADENRSEGVGQHLDDALA
                     FAEYLTAKLREERMGSGWTLDLLRFESARVSAANPTRRFVARLFRHDISLLVRSLARR
                     EEHPTVVRRRTVAVWWRPKARGPVRYSVFAAPRLFGRRRAQNRSRETAT"
     gene            complement(1107..1973)
                     /locus_tag="VD968_17655"
     CDS             complement(1107..1973)
                     /locus_tag="VD968_17655"
                     /inference="COORDINATES: protein motif:HMM:NF003818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 domain-containing protein"
                     /protein_id="HYE16268.1"
                     /translation="MAAEVKAGAAASLGGLPVLGVGLGFREPFRGDLFMNRGGVDFLE
                     ITAEHYLDATAEKERELNLLAEHFTLIPHGLGLSLGSAEGVDREHLRKLAKLIRRLSP
                     PWWSEHASFTRAGGIDIGHLTPTVFTREAAEVFARNLSVVRGEIEAPLILENITYALT
                     VPGGEMTEADFICEVLGRTGCGLLLDVTNLHINSVNHGYDWRAFLDRLPAESVVQLHF
                     VGGHWHHGMLVDSHSHPTPEEVWEVMGEALARFPVRGVVLERDENLPPFAEILSELGR
                     ARETWRQHGRWD"
     gene            complement(1957..2994)
                     /locus_tag="VD968_17660"
     CDS             complement(1957..2994)
                     /locus_tag="VD968_17660"
                     /inference="COORDINATES: protein motif:HMM:TIGR04222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR04222 domain-containing membrane protein"
                     /protein_id="HYE16269.1"
                     /translation="MDWLTSNPIADMHGPVFLIFYGGAIALTLAACWLARRRLDWTAG
                     MPPPAIPAAPDPHEIAYLRGGESEVTRSVVFALVQRGLLEVKTVGTGFYVGRAAGVQD
                     RRSLSPIERRAYDWFSATSAPIKTESIFRDDALPSLLRPFCSTYENNLRRERLINSED
                     ERRAVARVALAGALVIVGLGGYKLLIALSRGRTNVGFLIVFAVVGLVVLYKICRLPRI
                     SARGREYLERLRLAFEWLKSTRPAPAVSAAGGDYAAAHAFDPSLLMLVGVFGVGALAG
                     TQYNYFQDSFRRAAVADTSGSYSGSSCGSSCNSSSGGGSSCAGGSSSGSSCGSSCGGG
                     CGGGGCGGCGS"
BASE COUNT          468 a         1022 c         1089 g          479 t
ORIGIN      
        1 aagtagttcg gccgccgagc gccttcttcg tcagcgctat ctggcccgcg tggtagagcg
       61 tgtgctgcac gacgccgtgc agcgtgacgt agcgcgagga catctccggg tgaatagctt
      121 cgtctggccc gttgtcgtct aaggcgatga cggcctcgcg caacgcgcgg ttcgtctcct
      181 caagctcgcg gagcgcttcg gcccaagcgg cttcggaagt ctcggcggcc gcgggccagt
      241 cctccggcgt gtcgtaaatc tgcgcggggt cgcccgagag gcgtcgcagc acggcgcgct
      301 cccaggctgc cgcgtgcagg actaactcat ggatgctgtg cgtgtcctcg aatggccgcg
      361 ccgcggcctg ctccgccgtc acgcccgcga gtatttcctt catcgagggg ccgtgccacg
      421 cgccgccctc gtgggcgcgc ctcaactggt cggcgattct ctccgtttct ctcatgtcgc
      481 tgtctcccgg ctgcgatttt gcgcgcggcg ccggccgaag aggcggggcg cggcgaagac
      541 cgagtagcgg acggggccgc gcgctttggg gcgccaccag accgccacgg tgcggcggcg
      601 cacgaccgtg gggtgctcct ctcggcgggc gaggcttcgg acgaggaggc ttatgtcgtg
      661 gcggaagagg cgcgcgacga agcggcgcgt ggggttcgcg gcgcttacgc gcgcgctctc
      721 gaagcgcagc aggtctagcg tccagccgga gcccatgcgc tcctcgcgga gcttggcggt
      781 gaggtactcg gcgaaggcga gcgcgtcgtc gaggtgctgg ccgacgccct cgctgcggtt
      841 ctcgtcggcg tagcgcatga agtgcgcgtt gaagcggccg cgcaaggccc tctgcgtgag
      901 aggcaggagc ttcgccaccc ccgacaggcg cttgttgtgc agggactcgg agaagcgctt
      961 cacttccgag gcggagaggc gcgcaagcaa actcgcctcc gcgtcgtcta ggcccagctc
     1021 gcgcccgacc ttgagggggt cgccgaagaa acgctcgcgc acggccgcgt ccgtgtagag
     1081 gcgcgcgagt gtcttctgca tttcggctag tcccatcggc cgtgctgcct ccacgtctcc
     1141 cgcgctcggc ccagctccga tagaatctcg gcgaagggcg gcaaattctc gtcgcgctct
     1201 agcacgacgc cgcgcacggg gaagcgagcg agcgcctcgc ccatcacctc ccagacttct
     1261 tcgggcgtgg ggtgcgagtg gctgtcaacg agcattccat gatgccagtg accgccgacg
     1321 aagtgaagct gcacgacgct ctcggcgggg aggcggtcga ggaacgcgcg ccagtcgtag
     1381 ccgtggttga cggagttgat gtgcaggttc gtaacgtcga gcagcagccc gcagcccgtc
     1441 cgcccgagca cctcgcagat gaaatccgcc tccgtcatct cgccgcccgg cacggtgagc
     1501 gcgtaagtga tgttctcgag tatcagcggc gcctcaatct ctccgcgcac gaccgagagg
     1561 ttgcgcgcga agacctcggc cgcctcgcgt gtgaagaccg tgggcgtcag gtggcctatg
     1621 tctatcccgc ccgcgcgcgt gaaggaggcg tgctcgctcc accagggcgg cgagaggcgg
     1681 cggataagtt tagcgagctt gcgcaggtgc tcgcggtcaa cgccttcggc gctcccgagc
     1741 gagaggccga gcccgtgcgg tatgagcgtg aagtgctcgg ccagaaggtt tagctcgcgc
     1801 tccttctcgg ccgtcgcgtc gaggtagtgc tcggcggtga tttcgaggaa gtcaacgccg
     1861 ccgcggttca tgaataggtc gccgcggaac ggctcgcgga agcccagccc cacgccgagc
     1921 acggggaggc cgcccagcga tgcggccgcc ccggctttaa cttccgcagc caccgcaccc
     1981 acccccgccg caaccgccgc cgcagctact gccgcaactg ctgccgctgc tgctcccgcc
     2041 cgcgcaactg ctcccgccgc cgctcgaaga gttgcacgaa gagccgcacg aagagccgct
     2101 gtagctgccc gaggtgtcgg ctacggccgc gcgccggaaa gagtcttgga agtagttgta
     2161 ctgcgtgccg gcgagcgcgc cgacgccgaa gacgcccacg agcatcagga gcgaggggtc
     2221 gaaggcgtgc gccgcggcgt agtcaccgcc ggccgcgctc accgcgggcg ccggccgcgt
     2281 gctcttcagc cactcgaagg cgagccgcag gcgttcgagg tactcgcgcc cgcgcgcgct
     2341 tatgcgcggc agccggcaga ttttgtagag cacgacgagg ccgacgacgg cgaagacgat
     2401 gaggaagccg acgttcgtac ggccgcgtga gagggctatg agcagcttgt agccgccgag
     2461 gccgacgatg acgagagcgc ccgcgagcgc cacgcgcgcg acggcgcgcc tctcgtcctc
     2521 ggagttaatc aggcgctcgc ggcgcaggtt gttctcgtaa gtggagcaga aggggcggag
     2581 aagcgacggg agcgcgtcgt cgcggaagat gctctcggtc ttgatggggg cggaggtggc
     2641 cgagaaccag tcgtatgcgc gccgctcgat tggcgagagc gagcggcggt cttgcacgcc
     2701 cgcggcgcgg ccgacgtaga atcccgtgcc gacggttttg acttcgagaa ggcccctctg
     2761 cacgagcgcg aagacgacgg agcgcgtcac ttccgattcg cccccgcgga ggtacgcgat
     2821 ctcgtgcggg tcgggcgcgg ccggtatcgc gggcggcggc atccccgccg tccagtcgag
     2881 ccgtctgcgc gcgagccagc aggcggcgag cgtcaaggcg atggcgccgc cgtagaagat
     2941 gagaaagacg gggccgtgca tgtcggcgat ggggttgctc gtcagccagt ccatagcgtc
     3001 tcgcctcctc aaacagcctc acactattac gaacgcccac gcccccttgt tgcccgcc
//
LOCUS       DASPKR010000665         2133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_743058, whole genome shotgun sequence.
ACCESSION   DASPKR010000665 DASPKR010000000
VERSION     DASPKR010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_743058"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..383)
                     /locus_tag="VD968_17665"
     CDS             complement(<1..383)
                     /locus_tag="VD968_17665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16270.1"
                     /translation="MQNPFQPNLRKPWLLLCTTLLVVYTILPDSRETLFFLEGTSSLL
                     EAAMFLLSFPLGDLAAFFFFYSDGHGVFARFAFWALAMGLGYAQWFHLFPALLSAANR
                     AAAAPAQPLTVLNLESASGVAPARAR"
     gene            596..>2133
                     /locus_tag="VD968_17670"
     CDS             596..>2133
                     /locus_tag="VD968_17670"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT and VWA domain-containing protein"
                     /protein_id="HYE16271.1"
                     /translation="MRTVRDLLCLVFALVLLAFASASASAQGVIVPGPCRRCPVPPRP
                     LPPPPRALPVKSIKFDTKVTGQVATTHVEQVFRNDTDSTLEGTYFFPIPESASISEFA
                     IWEGDRRLAGEVRPREEARRIYDEIVRRQRDPGLLEYAGRDLFQASIFPIPPRSDKKL
                     EITYTQTLRGEGGTVSYRYPLGTGRNVAPIVGTVSGRVEVESRGAVRNIYSPSHEVEV
                     TRDAGRGARVSFETKPGREPQDFQLFYTVSDADFSLTLLTHREPGKDGYFLLTVSPRD
                     DVAEQEYAAKDIVFVLDTSGSMSAAGKMDKARAALLHGVRSLRPGDRFNVVNFAGEEH
                     LMAAGLVWADQAGRARGEEFVGRLKPVGGTNINDALVTSMKLFDQSDRPRMLVFMTDG
                     LPTVGETNVKSIIENAQKARVPGVRLFTFGVGYDVNTALLDKLAAENGGVAEYVEPDE
                     DLEIKVSNFFTKINHPVLTDIEIEMGAVETDLIYPRQLPDLFRGTQLTVIGRYKNGYD
                     VSGVT"
BASE COUNT          388 a          698 c          723 g          324 t
ORIGIN      
        1 cgcgcgcggg ccggggcaac gccagaggcg ctttcgaggt tcagaacggt gaggggctgc
       61 gcgggggcgg ccgccgcgcg gttcgcggcg ctcaagaggg ctgggaagag gtggaaccac
      121 tgcgcgtagc cgagccccat cgccagcgcc cagaaggcga agcgcgcgaa gacgccgtgg
      181 ccgtcggagt agaaaaagaa gaaggcggcc aggtcgccga gcgggaagga gagcaggaac
      241 atcgcggctt cgagcagcga gcttgtgcct tcgaggaaga aaagggtttc gcgcgagtcg
      301 gggaggatgg tatagacgac gagaagcgtc gtgcaaagca gcagccacgg ctttcgaagg
      361 ttcggctgga aagggttctg catcacgctc ctccgcgtgt aaaaggcggg tggtcggatt
      421 ttcaagctgc ccaggcacct tagacaccgc ccgcgccggc cctgttccgt aaaccctcgg
      481 ccggcccggc gcgcaagaaa ggggcctgcg ggcgttctag gtgcgggaag ggagccgcgg
      541 gcgcggcccc gccgttttca ggcaattttt taagattcgc ccgaggagag tgatgatgcg
      601 aaccgttaga gacctgctgt gcctcgtttt cgccctcgtg cttctggcct tcgcctccgc
      661 gagcgcgagc gctcagggcg tcatagtccc cggcccctgc cggcgctgcc cagtcccgcc
      721 gaggccgctg ccccctccgc cgcgcgcgct ccctgtcaag tccatcaagt tcgacacgaa
      781 ggttacgggc caggtcgcca ccacgcatgt cgagcaggtc ttccgcaacg acacggactc
      841 gacgctcgaa ggcacctatt tcttccccat acctgagtcg gcctccatct cggagttcgc
      901 catctgggag ggcgacaggc gcctcgcggg cgaggtgcgc ccgcgcgagg aggcgcgcag
      961 gatttatgac gagatagttc ggcgccagcg cgaccccggc ctcttggagt acgccgggcg
     1021 cgacctcttc caagccagca tcttccccat accgccgcgc tccgacaaga agttggagat
     1081 aacctacacg cagacgctgc gcggcgaggg cggcacggtc tcataccgct acccgctcgg
     1141 gacgggccgc aacgtcgcgc ccatcgtcgg aacggtctcc gggcgcgtcg aggtcgagag
     1201 ccgcggggcg gtgcgcaaca tctactcgcc gagccacgag gtcgaggtca cgcgcgacgc
     1261 cggccggggc gcgcgcgtct ccttcgagac gaagccgggc cgcgagccgc aggacttcca
     1321 gctcttctac acggtctcgg acgcagactt cagcctcacg ctcctaacgc accgcgagcc
     1381 gggcaaggac ggctactttc tgctgacggt ctcgccgcgc gacgacgtgg ccgagcagga
     1441 gtacgcggcc aaagacatcg tcttcgtgct cgacacttcg ggctcgatgt cggccgcggg
     1501 gaagatggat aaggcgcgcg cggcgctcct gcacggcgtg cgttctttgc ggcccggcga
     1561 ccgcttcaac gtcgtcaact tcgcgggcga ggagcacctg atggcggcgg ggctcgtgtg
     1621 ggcagaccag gcggggcgcg cgcgcggcga ggagttcgtc ggccggctca agcccgtcgg
     1681 cggcacgaac ataaacgacg cgctcgtcac ctcgatgaag ctgttcgacc agagcgaccg
     1741 cccgcgcatg ctcgtcttca tgacggacgg gctgcccacc gtcggcgaga cgaacgtgaa
     1801 gagcatcatc gagaacgcgc agaaggcgcg agtccccggc gtgcgactgt tcaccttcgg
     1861 cgtcggctac gacgtgaaca cggcgctttt agacaagctc gcggccgaga acggcggcgt
     1921 cgccgagtac gtcgagccgg acgaagacct tgagatcaag gtctcgaact tctttacgaa
     1981 gataaaccac cccgtcctca ctgacattga aattgagatg ggcgccgtcg agactgacct
     2041 catctacccg cgccaactgc ccgacctctt ccgcggcacg caactgacgg tcatcgggcg
     2101 atacaagaac ggctacgacg tgagcggcgt cac
//
LOCUS       DASPKR010000666         3317 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_107057, whole genome shotgun sequence.
ACCESSION   DASPKR010000666 DASPKR010000000
VERSION     DASPKR010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3317)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3317
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107057"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..810)
                     /locus_tag="VD968_17675"
     CDS             complement(<1..810)
                     /locus_tag="VD968_17675"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE16272.1"
                     /translation="MTVAISVENVSKTYPVPLAGMKQFFRMKAPAPVEAVRGASFEVG
                     EGEVFGLIGRNGAGKTTVTKIIATLVQPTSGSVTVRGFDSVEDDERVRSLVGLAGAEE
                     RSFYWRLTVEQNLTFFARLYGLGSRAAARRIGEMVERFELGELRRRRFGELSTGNKQR
                     MAVARALLNSPPILLLDEPTRSLDPLAAAQMRALIGSLAGGSPPVTVLLTSHNLAEVE
                     ELCGRVAIISRGRIRAIDTPRHLRAAHAQEERVRLTVRGITAERAGELLRGV"
     gene            complement(838..1653)
                     /locus_tag="VD968_17680"
     CDS             complement(838..1653)
                     /locus_tag="VD968_17680"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16273.1"
                     /translation="MNRLATFGLVFVVLLAVVALAAPIIATHEVGATNLLGRYLPPSS
                     QHWLGTDATGRDVFSRVVFGARISLRVGIVVVAVSAVIGTIVGSLAGYYGGWVDRIVS
                     GYVLNVFLAFPGLLLAIAMVAFLGAGLNKLILALCVIGWVGYARVMRGQVLKVREYDF
                     VQAARALGARDWRIIFSHILPNAIQPLIVQASLGMAGAVLSEASLSFLGLGVPPPAPS
                     WGVMLEEARDLTTLQRAPHAMLVPGVAIALTVLAFNFLGDGLREYLDPRQRRR"
     gene            complement(1653..2645)
                     /locus_tag="VD968_17685"
     CDS             complement(1653..2645)
                     /locus_tag="VD968_17685"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16274.1"
                     /translation="MKHKALDLLRRLLMLLLVVWTVVSLVTLLIELVPGDPATAILGD
                     QATPEQVEQFKRKHGLDRPAFFFTYSEDESGRRGLRWHGADNRYVDYWRAILAGDMGR
                     SFRTDRPVMDLIVSRYGATVQLAIAALVVAVSIAIPLGVIAGTNRGRWLDSLLSVVAL
                     VGISLPSFVIGPVLIYIFAVWLGVLNASGRFGPASIIMPAVTLGAALSALLTRMVRSS
                     VIEEMGEDYVRTARAKGLSERTVVYKHVLKNGLIPVVTVLGLQLGVLLAGAIITEKIF
                     NWPGIGLLLVDDGIGKRDYRLVQGCVLVISVTYIFANTLTDMVYRWLDPRIRVS"
     gene            complement(2852..>3317)
                     /locus_tag="VD968_17690"
     CDS             complement(2852..>3317)
                     /locus_tag="VD968_17690"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ubiquinone/menaquinone biosynthesis
                     methyltransferase"
                     /protein_id="HYE16275.1"
                     /translation="MLEIAKRKAEGRARRVPFVEGDALRLPFADETFDAVTIAFGLRN
                     LSGIEDGLRELRRVLRPGGVAAVLEFSSPVVPGFRALFRFYFERVLPLVGGWVSGSRG
                     AYEYLPDSVSKFPDQKRLAALMTEAGFEGVEYRNLTGGIAALHTGARRRADS"
BASE COUNT          603 a         1096 c         1142 g          476 t
ORIGIN      
        1 gacgccgcgc agaagctcgc cagcgcgctc ggccgtgatg ccgcgcaccg tgaggcgcac
       61 gcgctcctcc tgggcgtgcg cggcccgcaa gtgtcggggc gtgtctatcg cgcgtattcg
      121 cccgcggctt atgattgcga cccggccgca aagctcctct acttcggcca ggttgtgcga
      181 ggttagaagg accgtcacag gcggcgaccc gcccgcgagc gagccgatga gggcgcgcat
      241 ctgcgcggcc gcgagggggt cgagcgagcg cgtaggctcg tcgagcagga gtatcggcgg
      301 tgagttgagc agagcgcgcg cgaccgccat gcgctgcttg tttccggtcg agagctctcc
      361 gaatcggcgg cgccgcagct cgcccagctc gaagcgctcg accatttcgc cgatgcggcg
      421 cgccgccgcc cgcgagccta gcccgtagag ccgcgcgaag aaggtcaggt tctgctcgac
      481 cgtgaggcgc cagtagaagc tgcgctcctc ggcgcccgcc aagcccacga gcgagcgcac
      541 acgctcgtcg tcctcgacgc tgtcgaagcc gcgaacggtc acgctccccg aagtcggctg
      601 cacgagcgtc gcgatgattt tcgtgacggt ggtcttcccc gcgccgttgc ggccgatgag
      661 cccgaacacc tcgccctcgc ccacctcgaa ggaggccccg cgcacggcct cgaccggcgc
      721 gggcgccttc atgcggaaga actgcttcat ccccgcgagc ggcaccgggt aagtcttcga
      781 gacgttctcg accgagatgg cgactgtcat cggttgcgaa atcttcgggc ggggctgtca
      841 gcgtcggcgc tggcgcgggt cgaggtactc gcgcaggccg tcgccgagga agttgaaggc
      901 gagaacggtg agcgcaatcg cgacgccggg gacgagcatg gcgtgcggcg cgcgctgtaa
      961 ggtcgtcagg tcgcgcgcct cttcgagcat cacgccccag gacggcgcgg gcggcgggac
     1021 gcccaggccc aggaacgata gcgacgcttc ggagagaacg gcgcccgcca tgccgaggct
     1081 cgcctgcacg atgagcggct gtatggcgtt cggcagtatg tgcgagaaga ttatgcgcca
     1141 gtcgcgcgcg ccgagcgcgc gcgcggcctg cacgaagtca tactcgcgta ccttcagcac
     1201 ctgcccgcgc atgacgcgtg cgtagccgac ccacccgatg acgcacagcg ccagtatcag
     1261 cttgttcagg cccgcgccca ggaacgccac catcgctatc gcgagcagca ggccggggaa
     1321 ggccaggaag acgttaagga cgtagcccga aactatccgg tcaacccacc cgccgtagta
     1381 gccagcgagc gagcccacta ttgtccctat cacagccgag acggcgacca ccactatccc
     1441 gacccgcagc gatatgcgcg cgccgaagac gacgcgcgag aaaacgtcgc gccccgtcgc
     1501 gtcagtcccc agccagtgct gggaggaggg cggcagatac cgcccgagca ggttcgtcgc
     1561 gccaacctcg tgagtcgcga tgatgggggc ggcgagcgcg acgacggcga gcagcactac
     1621 gaagacgagg ccgaatgttg ccagacggtt cattacgaga ctcgtatgcg cgggtcgagc
     1681 cagcgataga ccatgtcggt cagggtgttc gcgaagatgt aggtgacgct gatgacgagc
     1741 acgcagccct gcacgagcct gtagtcgcgc ttcccgatgc cgtcgtcaac gagtagcagg
     1801 ccgatgccgg gccagttgaa aatcttctcc gtgatgatgg cgcccgcgag gagcacgccg
     1861 agctgtaggc cgaggacagt gacgaccggt atcagcccgt tcttgagcac gtgcttatag
     1921 acgaccgtgc gctcgctcag gcccttcgcg cgcgccgtgc ggacgtagtc ttcgcccatc
     1981 tcctcgatga cggatgagcg caccatgcgc gtcaggagcg ccgagagcgc cgcgccgagc
     2041 gtgacggccg gcatgattat gctcgccggg ccgaagcgcc ccgaagcgtt cagcacccct
     2101 agccacacgg cgaagatgta gatgagcacg ggcccgatga cgaagctcgg gaggcttatg
     2161 cctacgagcg cgacgacgga gaggaggctg tcgagccagc ggccgcggtt cgtgccggcg
     2221 atgactccga gcgggatggc gatgctcacg gcgacgacga gcgccgcgat ggcgagctgc
     2281 acggtggcgc cgtagcgcga gactatcaag tccatcacgg ggcggtcggt gcggaaggat
     2341 cggcccatgt ctcccgcgag tattgcgcgc cagtagtcaa cgtagcggtt gtccgcgccg
     2401 tgccagcgca agccgcgccg tccgctctcg tcctcggagt aagtgaagaa gaaggccggg
     2461 cggtcgaggc cgtgcttgcg cttgaactgc tcgacctgtt cgggcgtcgc ctggtcgccg
     2521 agtatagcgg tcgcgggatc gcccggcacg agctcgatga ggagtgtgac gagcgagacg
     2581 accgtccaca cgacgagcag cagcatgagc aggcggcgga ggaggtctaa agccttgtgc
     2641 ttcatctaaa gtttcggcgg cggtaagtgg tgcgaaagcg ctgggcgtga tgatagcacc
     2701 ggcggggaaa attgcggagc ggcggggata aaaacaccaa gcccggcgaa ccgtggcctc
     2761 gacggcggcc ccgacaacca ccgatagaag cacaagctca ccgggccagg ttccgggttg
     2821 cgaccgtcag gtgcgaggcg caaccaagcc ttcaagaatc ggccctacgg cgcgcgcccg
     2881 tgtggagcgc cgcgatgccg ccggtcaagt tcctgtactc gaccccttca aaccccgctt
     2941 ccgtcatcaa ggccgccaga cgcttctggt ccgggaactt cgagacggag tcgggcaggt
     3001 actcgtaagc accgcgcgag ccgctcaccc agccgccgac cagcggcagc acacgctcga
     3061 agtagaagcg gaagagagcg cgaaagcccg gcacgacggg gctcgaaaat tccagcacgg
     3121 ccgcgacgcc gcccggcctc aagaccctgc gcaactcccg caggccgtcc tcgatgccgg
     3181 ataggttccg caggccgaac gctatggtca cggcgtcgaa cgtctcgtcg gcgaagggga
     3241 gccgcagcgc gtccccctcg acgaagggga cgcggcgcgc gcgcccttcg gctttccgct
     3301 tcgcgatttc aagcatc
//
LOCUS       DASPKR010000667         9891 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1653896, whole genome shotgun sequence.
ACCESSION   DASPKR010000667 DASPKR010000000
VERSION     DASPKR010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9891)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9891
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1653896"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1117
                     /locus_tag="VD968_17695"
     CDS             <1..1117
                     /locus_tag="VD968_17695"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007154 - cell communication [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Calx-beta domain-containing protein"
                     /protein_id="HYE16276.1"
                     /translation="RLTVTVNRLNDASGEATVDYATSDGSASERRDYTTALGRLRFAP
                     GETSKTFDVLITEDAYQEPDETIHLALSNPSGGGLTGGKGAAVINILANDSPPPAGNP
                     IDESQTFVRQHYHDFLNREPDAGGLQFWSNDIELCPAADQQCRQARRANVSAAFFLSI
                     EFQRTGYRVIRFYRASFPDTPQRPRALPRYREFLRDTQELQRGVVVGQGNWQQKLNEN
                     LLAFAREWVQRPDFLAEFPAEMEADEYINKLFANSGVTPTPAEFNIAFDAYNNGGVEG
                     RARALIAVVDSNSVYNRQYNPALVLMQYIGYLRRNPDDPPDTGYAGFDFWLAKLDSFS
                     QPGEDVSNDTVAFLRIQRAEMVRAFIESIEYRRRFAP"
     gene            1315..1842
                     /locus_tag="VD968_17700"
     CDS             1315..1842
                     /locus_tag="VD968_17700"
                     /inference="COORDINATES: protein motif:HMM:NF020473.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1844 domain-containing protein"
                     /protein_id="HYE16277.1"
                     /translation="MSEEKPTFKVTDRRLFNPDGTPREDIVREEEPPPAPEPTAREAA
                     AASAPAEREASREPAAAGARQAEAPAAGAEAEANPEEFLMLVEFVASFAADALGMVAH
                     PGGPRGEPNPPLAKQCIDMLGTLQRKTSGNLSEEEKQFLDMILSQLRMQYVSLTSGGA
                     RGGRGFTGADITGGR"
     gene            1914..2693
                     /locus_tag="VD968_17705"
     CDS             1914..2693
                     /locus_tag="VD968_17705"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE16278.1"
                     /translation="MKVTLLGTGTSTGVPSIGCECETCTSEDPRDKRLRVSALVEHEG
                     LSVLIDTSSDFRQQALRHRIRRLDAVLITHCHADHIFGLDDIRPLNFRHGALGVYANE
                     RAWRDIRRIFQYVFEPSHFGGGLPQVLAHTVEHGASFCLGPGLTVTPVEVIHGRLPVA
                     AYRLNDFAYLTDLSEIPHGSLELLRGLDALVLDCLRVRPHPTHLWLERSLEYVRELRP
                     RRTFFTHMAHDILHARDCARLPPGVEFGYDGLEIEMVASSQ"
     gene            2750..3736
                     /locus_tag="VD968_17710"
     CDS             2750..3736
                     /locus_tag="VD968_17710"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: protein motif:HMM:NF004159.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HYE16279.1"
                     /translation="MYFYCLLTAPLMRLFHGYDNARIARPTVLTLGVFDGLHLGHQLV
                     MRTVVERARAAGATPTVITFDPHPRAVLHPESAPPLLQTLDQKVEALGVLGVEQTIVI
                     RFTPEFAGVRAEDFLRDVVHERLQAREVYLGRGFAFGRGREGNIELLRRVSAELGFKA
                     DEVAEVRLRGRRISSSLIRELLLAGRVNLARRMLGRPYGVEGRVVRGAERGRRIGFPT
                     ANLQPQNRVIPRSGVYVTATLIEGAWRRSVTNVGVRPTFERAGEPSVETFVMDWRGDL
                     YGDVVRVRFLRRLRGERRFASIDELKAQIGRDAERAREYFRRAGVQRSLSVI"
     gene            3816..5507
                     /locus_tag="VD968_17715"
     CDS             3816..5507
                     /locus_tag="VD968_17715"
                     /inference="COORDINATES: protein motif:HMM:NF015094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/ABC1/UbiB kinase family protein"
                     /protein_id="HYE16280.1"
                     /translation="MAVTERKLLSEPPPVALVEVGGVPAPEAPAIGAQADAEAEQFEQ
                     EAAGWRGWWRTFQIARVLGTMALYLFLNDYDVRAAFNRRLAARRLEESRALGRAAYWK
                     ARARDLLLRRLPDRLIRLVRLFVFRGGEGSGVKERQLERQGAWLRENLIGLGPTFIKI
                     GQALGTRADLLPLAYIKELATLQDQVPPFPTAEAFTRIESELGRPVPEAFAEIDAEPI
                     ASASLGQVYRARLHTGEEVAVKVQRPRLRETVGFDIAVLGRITRFLSRFPSMSENADW
                     EGMLREFRATISEEMDYVSEGRNADRFRRNFREWRAVRVPRIHWSHTTARVLTMEFVR
                     GTKVTDLGGLRERRISPVKVNRLLVRAYLKQLLEDGFFHADPHPGNLLVMDTGHLVFF
                     DFGMVGRITPRLQSQMIDAFFHVVGRDIEGLAQDLIDLNFLKPGVDTERVRPVVEGLF
                     RHYLNLKLGEVNFKELTYDLAEVIYEYPFRLPSNFTYIIRALMTLEGIGLVTDPGFSF
                     FDTARPYAKEFMLKREGRQFRRLLLDKITGRDEGRINWGKMWKLAKMAAKAYLEK"
     gene            complement(5595..6005)
                     /locus_tag="VD968_17720"
     CDS             complement(5595..6005)
                     /locus_tag="VD968_17720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16281.1"
                     /translation="MTKRGKGGGRRVEKNWIEWAVFGIGLLLVAGTLGFLIYDGATQS
                     GEPPTVEVRLGEPRPTGHNFTVPVTVFNRGDETAEGVTVEVTLEAGGGAEPERSEFTV
                     AFLPRRASREGWVAFSTDPRSGRLTPRVLGYEKP"
     gene            complement(6002..6826)
                     /locus_tag="VD968_17725"
     CDS             complement(6002..6826)
                     /locus_tag="VD968_17725"
                     /inference="COORDINATES: protein motif:HMM:TIGR02587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02587 family membrane protein"
                     /protein_id="HYE16282.1"
                     /translation="MRTVNESLRQYARGLAGGLLFSLPLLYTMEVWWAGFTSHPWRLA
                     AYVAATFALLLGYNYFLGLRRDSCFSEVVIDSFEEMGLGLLTAFLVLWLLGRVNLDQP
                     AAEIVGKTTIEAMTVAIGFSVGTSQLGAEGDGDKGVGGGEFEPSFAGQLVIALCGAVL
                     FAANVAPTEEIVMIAVEISAWRLAGLALLSLSLGALVLYYSEFAGSKRFVRFDAHHDV
                     LVGTVVTYAVALAASAAILGFFGRFDGQALATCVAQTVVLGVASTLGASAGRLLLQ"
     gene            6916..7887
                     /gene="corA"
                     /locus_tag="VD968_17730"
     CDS             6916..7887
                     /gene="corA"
                     /locus_tag="VD968_17730"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HYE16283.1"
                     /translation="MITTTCLNSASKKFVKGFPAAELSDYCEAETNIVWADVSDPTGE
                     DFLELAEEFNFHPLSIEDCRNAHQRPKVEEYPGYYFIVLYEAELVGPDDDLELRELNI
                     FLGPNFLVTVHSRPIRAIETAGRLWGEWTDRASHGAGLLAYLLIDAIVDDYMPLLDVL
                     SDRMDDLEDDIFGDFKPEAIQEIFRIKKQLLFLRRTVTPLRDVFNTMLRREQPIFPRE
                     THVYFQDVFDHIIRVADSIDTLRDMLGSTMDAYLSVSGNRMNMVMKRLTSVATILMSV
                     TLIAGIYGMNFEFMPELKWRFGYVFALLSMVGAGLALYFYLRRVKWL"
     gene            7878..8222
                     /locus_tag="VD968_17735"
     CDS             7878..8222
                     /locus_tag="VD968_17735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16284.1"
                     /translation="MAVRKHGRRKWRAPHMHGPGDWHPNGDENAAARLAPLEETDAFE
                     KSEQITGSHAAVNDTIRVDRSSVKMPENFTADERDAAGTFRLDPAVLVIVALMLAFVA
                     FIAWQITLMPEK"
     gene            complement(8307..9575)
                     /locus_tag="VD968_17740"
     CDS             complement(8307..9575)
                     /locus_tag="VD968_17740"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE16285.1"
                     /translation="MRNENTKGRARALAAPLALAALALAALLPPPASLAARRQDGRPR
                     RVETPARPTPTPARQQPGTTPAQTPTPSPTPPQAVPPRLQTQPVATPDEPRAQDGSGE
                     EVDEGEVVRINTNEIKLHVRVVDRYNRPVSDVKQSDFRVFENNVPQTVVAFTKEEVPI
                     SYGVVVDNSGSLRSQINQVIEAAKSIVESNKPGDETFVVRFVSSEEIKIMQDFTSDKQ
                     AVMDALEDMYVEGGQTAIIDAVYLSAEHASERKKGNPLEDKRRRAVIVITDGEDRSSF
                     YKKDQLFDALKEQDVQIYVIGFVNELERERGFISKSRRDKAVDFIDRLTRETGGRAFY
                     PTSLSELPQIAEEITKDLRTQYVLSYVPTNPARPGEFRPVRVAVADAPGREKRIAVTR
                     SGYTARGAAAPAGGQQPAANGQTTPAAKKP"
     gene            complement(9702..>9891)
                     /locus_tag="VD968_17745"
     CDS             complement(9702..>9891)
                     /locus_tag="VD968_17745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16286.1"
                     /translation="MNDTFERIALELRTQYSIGYRPTNFANDGKWHKLKIKVQPPRGF
                     PRLFVRGREGYYATAKPR"
BASE COUNT         1654 a         3392 c         3240 g         1605 t
ORIGIN      
        1 ccggctcacg gtcacggtca accgcctgaa cgacgcctcg ggcgaggcga ccgttgacta
       61 cgcgacctcg gacggctcgg cctccgagcg gcgcgactac acgaccgccc tcggccgcct
      121 ccgcttcgcg cccggcgaga cttccaagac cttcgacgtg ctcatcacag aggacgcata
      181 tcaggagccg gacgagacca tccacctcgc gctctccaac ccttcgggcg gcggcctgac
      241 cggcggcaag ggcgccgccg tcataaacat cctcgccaac gacagcccgc cgccggccgg
      301 caaccccatt gacgagtcgc agacgttcgt ccgccagcac taccacgact tcctcaaccg
      361 cgagccggac gcgggcggcc tacagttctg gtcgaatgac atagagctat gccccgccgc
      421 cgaccagcag tgcaggcagg cgaggcgcgc gaacgtctcg gccgccttct tcctctccat
      481 agagttccag cgcacgggct accgcgtcat acgcttctac cgcgcctcgt tccccgacac
      541 gccgcagcgg ccccgcgccc tgccgcgcta ccgcgagttt ttgcgggaca cgcaggagct
      601 acagcgcggc gtcgtcgtgg ggcaagggaa ctggcagcag aagctcaacg agaacctgct
      661 cgccttcgcg cgagagtggg tgcagcggcc ggacttcctc gccgagttcc ccgcggagat
      721 ggaggcggac gagtacatca acaagctctt cgcgaactcc ggggtgacgc cgaccccggc
      781 cgagttcaac atagccttcg acgcctataa caacggcggc gtggagggcc gggcccgcgc
      841 gctcatcgcc gttgtcgaca gcaactcggt ctataaccgc cagtacaacc cggcgctcgt
      901 cctcatgcag tacataggct acctgcgccg caaccccgac gacccgcccg acacaggcta
      961 cgccggcttc gacttctggc tcgccaagct cgacagcttc agccagcccg gcgaggacgt
     1021 ctccaacgac acggtcgcct tcttgcgcat acagcgcgcc gagatggtca gggccttcat
     1081 cgagtccata gagtaccgcc gccgcttcgc cccgtaaccg cggcgggcgc ggattaacca
     1141 cagaggccgc tgaggaagca cagggtttaa tcttctctgt gcttcctcag cggcctctgt
     1201 ttgcgacgat gccgatgcag gtgctaccat ccggctttaa gcaatcaaac taaacagact
     1261 cacgaatctt ttcgagcgcg gcccgtcttt agagcaggcc gccggggcaa gaagatgagc
     1321 gaagagaagc caacgttcaa agtcacagac cgccgcctgt tcaacccaga cggcacgccg
     1381 cgcgaggaca ttgtgcgcga ggaagagccg ccgcccgccc ccgagccgac cgcgcgagag
     1441 gcggccgcgg cctccgcgcc cgcggaacgt gaggcgtcga gagagcccgc cgccgcgggc
     1501 gcccggcagg cggaggcgcc ggccgcgggg gccgaggccg aggccaaccc ggaagagttc
     1561 ctcatgctcg tcgagttcgt cgcctcgttc gccgccgacg cgctcggcat ggtcgcgcac
     1621 cccggcgggc cgcgcggcga gccgaacccg ccgctcgcca agcagtgcat agacatgctc
     1681 ggcacgctcc agcgcaagac gagcggcaac ctctccgaag aggagaagca gttcctcgac
     1741 atgatcctct cacagctccg catgcagtac gtctcgctca cgagcggcgg cgcgcgcggc
     1801 ggccgcggct tcaccggcgc cgacatcacg ggcggaagat gagcggtcgg cggtcggcct
     1861 tcagcaatca gcttaccgtc tttggctgac cgctgattgc cgaccgctcc ttcatgaaag
     1921 tcacgctgct tggaactggc acttcgaccg gcgtcccctc catcgggtgc gagtgcgaga
     1981 cgtgcacctc cgaagacccg cgcgacaagc gtctgcgcgt ctcggcactc gtcgagcacg
     2041 aggggctctc tgttctgata gacacctcct cggacttccg ccagcaggcc cttcgtcacc
     2101 ggataaggcg gctcgacgcc gtgctcatca cgcactgcca cgccgaccac atcttcgggc
     2161 tcgacgacat acgcccctta aactttcgcc acggcgccct cggcgtctat gccaacgagc
     2221 gcgcgtggcg cgacatacgc cgcatattcc agtacgtctt cgagccgtcg cacttcgggg
     2281 gcggcctccc gcaggtgctc gcccacacgg tcgagcacgg ggcgagcttc tgcctcggcc
     2341 ccggcctcac ggtcacgccc gtcgaggtca tacacggccg gctccccgtc gccgcctacc
     2401 gcctgaacga cttcgcgtac ttgaccgacc tgagcgagat accgcacggc tctttggagc
     2461 tgctgagggg cttggacgcg ctcgtgctcg actgcctgcg agtgcgcccg caccctacgc
     2521 acctctggct cgaacgctcg ctcgagtacg tgcgggagct tcggccgcgc cgaaccttct
     2581 ttacgcacat ggcgcacgac atactccacg cgcgcgactg cgcgcgtctc ccgcccggcg
     2641 tcgagttcgg ctacgacggg ctcgagattg aaatggtagc cagtagtcag tagccggcag
     2701 gccacgcacg gctgcggccg gagcttccgc cccgacgaat ggccggggaa tgtatttcta
     2761 ctgcctgctg accgctcctc ttatgcgtct cttccacggc tacgataacg cgcgcatcgc
     2821 gaggccgacg gtgctgacgc ttggcgtctt cgacgggctg cacctcgggc accagctcgt
     2881 gatgcggacg gtggtcgagc gcgcgcgcgc cgcgggcgcc acgcccaccg tcatcacctt
     2941 cgacccgcac ccgcgcgccg tgctgcaccc ggagtcggcg ccgccgctcc tgcagacgct
     3001 cgaccagaag gtcgaggcgc tgggcgtgct cggcgtcgag cagacgatcg tcatacgctt
     3061 cacgccggag ttcgccgggg tgcgagccga agacttcttg cgcgacgtgg ttcacgagcg
     3121 ccttcaggcg agggaagttt acctcggccg cggcttcgcc ttcgggcgcg ggcgcgaggg
     3181 caacatagag cttctgagga gggtgagcgc cgagctgggc ttcaaggccg acgaggtcgc
     3241 ggaggttcgg ctgcgcggcc gtcgcataag ctcgagcctg atacgcgagc tgctactcgc
     3301 cgggcgcgtc aacctcgcgc gccgaatgct cgggcggcct tacggcgtag agggccgggt
     3361 cgtccgcggc gccgagcgcg gccgccgcat aggcttcccg acggcgaacc ttcagccgca
     3421 gaaccgcgtc atcccgcgct cgggcgtcta tgtcacggcg actctcatcg agggcgcatg
     3481 gcgccgcagc gtcacaaacg taggcgtccg gcccacgttc gagcgggcgg gcgaaccttc
     3541 cgtcgagacc ttcgtaatgg actggcgggg cgacctctac ggcgacgtgg tgcgcgtgcg
     3601 cttcctgcgc cgcctgcgcg gcgagcgccg cttcgcctct attgacgagc tgaaggcgca
     3661 gatcggccgc gacgcggagc gggcgcgcga atatttccgc cgggcgggcg tacagcgctc
     3721 gctctcggtc atctaagtgg ggagccagag aagtcgaaac cttgatttgt aggggacagt
     3781 atcgcgacag gttttaagta ggttcgcgct taatcatggc agttaccgaa cggaagttat
     3841 tgagtgagcc gcccccggtc gcgctggtcg aggtcggggg cgtgccggcc cccgaggcgc
     3901 cggcaatcgg cgcgcaggca gacgccgagg ccgagcagtt cgagcaggag gccgccggct
     3961 ggcgcggctg gtggaggact ttccagattg cgcgcgtgct cggcacgatg gcgctctacc
     4021 tcttcctgaa cgattacgac gtgcgcgccg ccttcaatcg ccgcctcgcc gcacgccgcc
     4081 tcgaagagtc gcgcgcgctg ggccgcgccg cttactggaa ggcgcgcgcc cgcgaccttc
     4141 tgctgcgccg cctgccggac aggctcatac gtctcgtccg cctcttcgtc ttccgcggcg
     4201 gcgagggctc gggcgtcaag gagcgccagc tcgagcgtca gggcgcgtgg ctgcgcgaga
     4261 acttaatcgg cctgggccct accttcatta agatcgggca ggcgctcggc acgcgcgcag
     4321 acctgctgcc gctcgcctac atcaaggagc tcgcgacgct gcaagaccag gtgccgccct
     4381 tcccgacggc cgaggcgttc acgcgcatag agtcggagct ggggcggccc gtccccgaag
     4441 ccttcgccga gattgacgcc gagcccatcg cctccgcctc gctcggccag gtctatcgcg
     4501 cgcgccttca caccggcgaa gaggtcgcgg tcaaagtcca gcgcccgcgc ctccgcgaga
     4561 cggtcggctt cgacatagcc gtcctgggcc gcatcacgcg cttcctctcg cgcttcccct
     4621 ccatgagcga gaacgccgac tgggagggga tgctgcgcga gttccgcgcg accatctcgg
     4681 aggagatgga ctacgtgagc gagggccgga acgccgaccg cttccgccgc aacttccgag
     4741 agtggcgcgc cgtgcgcgtg ccgcgcatac actggtcgca cacgacggcg cgcgtgctca
     4801 cgatggagtt cgtccgcggc acgaaggtca cggacctggg ggggctgcgg gagcgcagaa
     4861 tctcgcccgt caaggtcaac cgcctgctcg tgcgcgcata cctcaagcaa ctcctggagg
     4921 acggcttctt ccacgcagac ccgcaccccg ggaacctgct cgtgatggat acgggccacc
     4981 tcgtcttctt cgacttcggc atggtcggcc gcatcacgcc gcgcctacag tcgcagatga
     5041 tagacgcctt cttccacgtc gtcgggcgcg acatagaggg cctggcgcag gacttgatag
     5101 acctgaactt cctcaagccc ggcgttgaca ccgaacgcgt gcgccccgtc gtcgaggggc
     5161 tgttccggca ctacctgaac ctgaagctcg gcgaggtcaa cttcaaggag ctgacctacg
     5221 accttgccga ggtcatttac gagtacccgt tccggctgcc gtcgaacttc acctacatca
     5281 tacgggcgct gatgacgctc gaaggcatcg gcctcgtcac agaccccggt ttcagcttct
     5341 tcgacacggc gcggccttac gccaaggagt tcatgctcaa gcgcgagggg cgccagttcc
     5401 ggcggctcct cctggacaag ataacgggcc gcgacgaggg ccggatcaac tggggcaaga
     5461 tgtggaagct cgccaagatg gccgcgaagg cttacctgga aaaatagcca tagaggcacg
     5521 gaggagaagg cagaaagcag tcagaaccgg agaggtcttg actaccttct gctttctgcc
     5581 ttcttatttt tatctcaggg cttctcgtag cctaagacgc gcggcgtgag gcggcccgag
     5641 cgcgggtctg tgctgaaggc gacccagcct tcgcgcgagg cgcggcgcgg gaggaaggcg
     5701 acggtgaact cggagcgctc gggctcggcg cccccgccgg cttcgagcgt gacctcgacg
     5761 gtgacgccct cggccgtctc gtcgccccgg ttgaagaccg tgacggggac tgtgaagttg
     5821 tggccggtcg ggcgcggctc gccgaggcgc acctcgaccg tgggcggctc gccgctctgg
     5881 gtcgccccgt cgtaaatcag gaagcccaga gtccccgcca cgagcaggag gccgatgccg
     5941 aagacggccc actcgatcca gttcttctcg acgcggcgcc cgccgccctt acctctcttc
     6001 gtcattggag cagtaacctc ccggccgacg cgccgagcgt cgaggccacg ccgagcacga
     6061 cggtctgcgc cacgcaggtc gcgagcgcct gcccgtcgaa acgcccgaag aagccgagta
     6121 tggcggccga cgcggcgagc gccacggcgt atgtgactac ggtgccgacc aaaacgtcgt
     6181 ggtgcgcgtc gaagcgcacg aaccgcttcg agcccgcgaa ctcgctatag tagaggacga
     6241 gcgcgcccag ggagagagag agcagggcaa gcccggcgag ccgccacgcg gagatttcca
     6301 cggctatcat cactatctcc tcggtcgggg cgacgttagc ggcgaagagc accgcgccgc
     6361 agagcgcgat gaccaactgg ccggcgaagc tcggctcgaa ctcgcctccg cccacgccct
     6421 tgtctccgtc gccctcggcg cctagctgcg aggtgcctac ggagaagcct atggcgaccg
     6481 tcatcgcctc gatggtggtc ttgccgacta tctcggccgc cggctggtcg agattgacgc
     6541 gcccgagcag ccagaggacg aggaaggcag tgagtaggcc caggcccatc tcctcgaacg
     6601 agtcaatgac gacctcgctg aagcacgagt cgcgccggag gccgaggaag tagttgtagc
     6661 cgagcagcag cgcgaaggtc gcggccacgt aggcggccag gcgccacggg tgagaggtga
     6721 agcccgccca ccacacctcc atcgtgtaga gcagcggcag gctgaacagg agcccgccgg
     6781 ccagcccgcg cgcgtactga cgcagcgatt cgttgacagt ccgcattcct gaaagtaaat
     6841 gtagagtcgg ccccggccgc ggggtagtat actcgaaacc acaaaaggga gcgccgcggg
     6901 acggtttccg agcctatgat aacaaccacc tgcctgaaca gcgcgtcgaa gaagttcgtc
     6961 aagggcttcc cggccgccga gctgagcgac tactgcgagg ccgagacgaa catagtctgg
     7021 gccgacgtgt cagacccgac gggcgaggac ttcctggagc tcgccgagga gttcaacttc
     7081 cacccgctct caatagagga ctgccgcaac gcgcaccagc gcccgaaggt cgaggagtac
     7141 cccggctact acttcatcgt cctctacgag gccgagctgg tcggccccga cgacgacctc
     7201 gagctccggg agcttaacat cttcctcggc cccaacttcc tcgtaacagt ccacagccgc
     7261 cccatacgcg ccatcgagac ggccgggcgg ctgtggggcg agtggaccga ccgcgcgagc
     7321 cacggcgcgg gcttgctggc ctacctgctt attgacgcga tagttgacga ctacatgccg
     7381 ctcctcgacg tgctctccga ccgcatggac gatctcgagg acgacatatt cggagacttc
     7441 aagcccgagg ccatacagga gatattccgc atcaagaagc agctcctctt cctgcgccgc
     7501 acggtgacgc ccctgcgcga cgtcttcaac acgatgttgc ggcgcgagca gcccatcttc
     7561 ccgcgcgaga cgcacgtcta tttccaggac gtgttcgacc acatcatccg cgtcgccgac
     7621 tccatagaca cgctgcgcga catgctcggc tcgacgatgg acgcttacct gtcggtctcc
     7681 ggcaaccgca tgaacatggt gatgaagcgg ctcacgtcgg tcgcaaccat tctgatgtcg
     7741 gtgacgctga tagccgggat atacggcatg aacttcgagt tcatgccgga gttgaagtgg
     7801 cggttcggtt acgtcttcgc gctgctctcg atggtgggcg ccgggctcgc gctctacttc
     7861 tatctgagga gggtcaagtg gctgtgagga agcacgggag aaggaagtgg agggcgccgc
     7921 acatgcacgg ccccggcgac tggcacccga acggcgacga gaacgcggcg gcgcgcctcg
     7981 ccccgctcga agagaccgac gcgttcgaga agtccgagca gatcacgggc agccacgcgg
     8041 ccgtcaacga cacgatacgc gtggacaggt cgagcgtgaa gatgcccgag aacttcaccg
     8101 ccgacgagag ggacgccgcc ggcacgttcc ggctggaccc ggccgtgcta gtcatcgtcg
     8161 ccctcatgct cgccttcgtc gccttcatcg cctggcaaat aacgctcatg ccggagaagt
     8221 gatcgcgccc tcgcgcgcgc cggaataaaa agggccgagg gcgacgaggc cctcggccct
     8281 tcctttctgg ccgtcgcgcg cgcgccttac ggcttcttgg cggcgggcgt cgtctgcccg
     8341 ttcgcggcgg gctgctggcc gcccgccggg gcggcggcgc cgcgcgccgt gtaaccggag
     8401 cgcgtgacgg cgatgcgctt ctctcggccg ggcgcgtcgg cgacggcgac gcggacgggg
     8461 cggaactcgc cggggcgcgc agggttagtc ggcacgtagc tgaggacgta ctgcgtgcgc
     8521 aggtctttcg ttatctcctc ggctatctgc ggcagctccg atagtgacgt cgggtagaag
     8581 gcgcgcccgc cggtctcgcg cgtcaggcgg tcaatgaaat cgacggcctt gtcgcgccgc
     8641 gacttcgaga tgaagccccg ctcgcgctcc aattcgttga cgaagccgat gacgtaaatc
     8701 tgaacgtcct gctccttgag cgcgtcgaag agctgatcct tcttgtagaa gctcgagcga
     8761 tcctcgccgt ccgtgatgac tatgacggcg cggcgtcgct tgtcctccag cgggttgccc
     8821 ttcttgcgct ccgaggcgtg ctcggccgag agatacacgg cgtcaatgat ggccgtctgc
     8881 ccgccctcga cgtacatgtc ttcgagcgcg tccatcaccg cctgcttgtc ggacgtgaag
     8941 tcctgcatga tctttatctc ttcggacgac acgaagcgca cgacgaaggt ctcgtcgccc
     9001 ggcttgttgc tctcgacgat tgacttggcg gcctctatga cctggtttat ctgcgagcgc
     9061 aagctgccgg agttgtcaac gacgacgccg taggagatcg gcacctcctc cttcgtgaag
     9121 gccacgaccg tctgcgggac gttgttctcg aagacgcgga agtcgctctg cttcacgtcg
     9181 ctcacgggcc ggttgtagcg gtcaacgacg cggacgtgca gctttatctc gttggtgttg
     9241 atgcggacga cctcgccctc gtcaacctcc tcgcccgagc cgtcctgcgc gcgcggctcg
     9301 tcgggcgtgg cgacgggctg tgtctgaagc cgaggcggca cggcctgcgg cggcgtgggg
     9361 ctcggcgtcg gcgtctgcgc gggcgtcgtg ccgggctgct gcctggcggg cgtaggggtc
     9421 gggcgcgcgg gagtctccac gcggcgcggg cggccgtcct gccgccgcgc cgcgagcgag
     9481 gcgggcggcg gcagtagcgc ggcgagggcg agcgctgcga gggcgagcgg cgccgcgagc
     9541 gcgcgggccc ggccctttgt gttttcgttt ctcatctctt tcgcttccgt gaccccgaaa
     9601 aaggagatgc cgggcgggaa gacgccggcc gcagaagccg tgcacgtctg gcgcccggca
     9661 ccttcagaga tgccccgcgg ccccggccgg ttgccgccga cttagcgcgg cttggcggtg
     9721 gcgtagtagc cctcgcggcc gcgcacgaac aggcgcggga agccgcgcgg cggctgcacc
     9781 tttatcttca gcttgtgcca cttgccgtcg ttggcgaagt tcgtggggcg gtagccgatg
     9841 gagtactgcg tgcgaagctc gagcgctatg cgctcgaagg tgtcgttcat c
//
LOCUS       DASPKR010000668        10012 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1654134, whole genome shotgun sequence.
ACCESSION   DASPKR010000668 DASPKR010000000
VERSION     DASPKR010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10012)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10012
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1654134"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            219..4928
                     /locus_tag="VD968_17750"
     CDS             219..4928
                     /locus_tag="VD968_17750"
                     /inference="COORDINATES: protein motif:HMM:NF015140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE16287.1"
                     /translation="MVVLGGTTSITVAGAIYDPSTDIWKAIPATNPPTSYTGDRVVWT
                     GKEIFFWGGINNTTGKRGGLYNPTTNTWRQPNTFNAPSERNNFTMVWTGKEVIVWGGF
                     EGNTVTLNTGGRYNPETDTWTPTSTNGAADSRYGHTAVWTGTEMIVFGGDSRPIGGTG
                     NMVNTGGRYNPETDSWVLTSTAGAPLKNNHTAVWTGSEMFVWGGRYISPGVFREAARY
                     KPSTDSWIPTNNQDSAPGGEVGVWTGAELLVWGKKPPCSAGCNGTGGRYNPATNVWSP
                     MSHTGAPGGDGVAYSSAVWTGKEMFLLGRRYNPLTDTWAQASTVGAPADKSVAVWTGK
                     EVLVWGGGATPENNPAPAGGRYNPETDTWSPMATAGAPSARTMHSAVWTGSELLVWGG
                     RGYFSDSGTNAGGRYNPETDTWRPMATAGAPEMRLWNSAVWTGSEMVIWGGMGSATDA
                     SRWLNTGARYNPVSDTWQPTSTEGAPQGRAYHRAVWTGSQMIVWGGLVPVTWTGSGDP
                     VYTGARYNPATDVWTPTSLQSAASRRQSHVQVWTGTQMIVFGGTGPSGAAKLDGAVYN
                     APGSTTPGNLPPTVSLTSPAGGTGYQSGDTVRLAAEVSDADGTVTTVRFYANGQLVGA
                     DTQAPFAFDWTEVRGGDYALTATATDDGGAEARSSAANITVAPSTAPPGCVLTAPADG
                     STYAYGASVRMEATMTPNRDRSILRVEFLVDGQMFTFYEPPTYNPPYWALWTADASGT
                     RSLTARCTDNKGGVTTSAPKVITVNEQGFSISGQLLESINVPITNVRLRLDGPAGTAP
                     RYVITSVAGNGNYYFGGLKAGETYTVTPEAGAWRWSPDSMTFTAISKSWTLQHFYGTR
                     SGYAISGRLTDAGGNPISPATVYMSGSRNASAAVGTDGTYIFYNLAPGGTYTVQPAKN
                     LYTFAPNSRTFENLSAEQTADFTGTAQAKTYAVGGRVVDDQGAPVVGLTVRLGTVRVG
                     STQYRTTDADGRYSFDTVQEGETVSVSAQDSTGFYVFAPEGRTYYNIAADITDADFVA
                     NKRTFSIAGTLTGSNGMPLYPATVTVTGSATATVQVNSQGSYFINNLPRGGDYTIRPS
                     KEHYDFTPAEKTYTALAEYMVADFKGTRRTNAISGRVTSGGGGLEGVTVTLSGTQTAL
                     AVTDAQGNYRIGVLAGGTYEVKPSLQGYTFTPVSQSFPNISADQTADFAAAALQTPAE
                     PARFVIADVAPFEEGATSIVVTIRRSGDASQPASVDYETADGTARQGYDYMLARGTLR
                     FAAGEAEKQVAVIIINDAHDEADETFTLTLTAPTGGMELNALASAQLVIRGAAEVSQS
                     QNPADDVRFFVRQHYADFLNRVPDEAGLDYWARGIESCGADQQCREVKRIDTSAAFFL
                     SIEFQETGFLVYRLQKATDAQMPRYAEFLRQAQEIGSGVVVGKPGWAEKMEANKREFV
                     ERWSQNDAFKARYSATTGEQYVDALITNTGVALPREFRDSLAASLAGGALTRGEVLRA
                     VAEHESVRQAELNKAFVLMQYFGYLRRNPDDPPDTGMGGFNFWLKKLDSAGGDYRRAE
                     MVRAFIDSIEYRRRFAP"
     gene            5074..5553
                     /locus_tag="VD968_17755"
     CDS             5074..5553
                     /locus_tag="VD968_17755"
                     /inference="COORDINATES: protein motif:HMM:TIGR00632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="very short patch repair endonuclease"
                     /protein_id="HYE16288.1"
                     /translation="MQRPLRFDGFRPSSEKASRIASRIRSSDSKAETLLRSSVWRLGL
                     RFRKNVRALPGKPDLVFPRERVAVFCDGDFWHGRNWEEKRRKLKEGSNAPYWLSKIHA
                     NMQRDERHNSQLAGDGWRVLRFWESDILTDPARAASEVAAAVAERRQNSKGQERARA"
     gene            5583..7334
                     /locus_tag="VD968_17760"
     CDS             5583..7334
                     /locus_tag="VD968_17760"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: protein motif:HMM:NF012372.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HYE16289.1"
                     /translation="MSFFSGGGGLDLGFHRAGFRVVFASDIAPLFCKTLEANRGRYFP
                     DDMRVVAGDIRRVEPDGLPRGVDLVIGGPPCQSFSAFGRRAGGAAGRLDERGTLFEAY
                     CRLIEAVKPRAFLFENVRGILGTHKGRDWQEIVRAFSRIGYAVSHRILDAADYGVPQH
                     RERLFMVGHKLGGEFLFPEPTHGPDSPARAPHVTAGEALAGLEDEGEAGSLYLKRGKY
                     AHLLPLVPPGGNYLFFTARRGHPEPVFAYRSRFSDFLYKADPAQPVKTIIARPGAYSG
                     PFHWENRRFTLAEYKRLQGFPDDYVFCGGRQDVVRQIGNSVSPLIAEALAAAIAKQIF
                     GRDARARLLPASARLSFDERKGEKARRTRRQHDVAAALRMRDGAALFSFRDYRSRVEP
                     AEDLPHGSPNVTARADGRRVRLTVRADASRELFAEVGLEVCGAALVDVKLYGSRPHAV
                     QTLWNAVDDLVIRSSNFHSLFELYGHFTEPHPVFKVTRFRARSAHPIAAFAEHASDFR
                     NCSRYFPDAHLLGMFGDAFGTRDFTELVAALRAYRFDLRCHETNVAIPPGVYMVAYPF
                     TLPRRRLMSFGVGAARA"
     gene            7512..8387
                     /locus_tag="VD968_17765"
     CDS             7512..8387
                     /locus_tag="VD968_17765"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HYE16290.1"
                     /translation="MGWVKRMSRREGGINWATLVTMVVFHLGAIAALFMFSWQGLLAC
                     LLLWWVSGSLGIGMGFHRLLTHRGYKTPKLVEYFLTVCGTLTLEGGAIDWVVTHRIHH
                     ANTDVRGEDPHTPRDGRWWAHMGWILTGTAQQHGEAVMWRYAPDLMRDRFHSWLNRFY
                     FVPVVISGVLLLAFGGWSVFFMAFFLRIVVGLHATWLVNSATHMWGTRRFETTDDSTN
                     NMLIALLTFGEGWHNNHHAHPRAARHGVAWYELDVNWLGIRALKLLGLARDIKLIPQP
                     AAARRSEERALRRAA"
     gene            8477..9376
                     /locus_tag="VD968_17770"
     CDS             8477..9376
                     /locus_tag="VD968_17770"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HYE16291.1"
                     /translation="MPISSRRKSVAFFITLGSCLVALAVALNVGWVLLNWREVALLVL
                     GIIFFVLIIVGLVLNTTFLIREIRRNEQHDAFINSVTHELKTPIASIRLYLETLKSRD
                     VGEERRREFYDIMLADSDRLLRTVEQVLRAGRAGHRQRSALSTVVDLGEVVRECMELA
                     RVRYKLDGDSLVFAERLDGEPARVAGDPEELQTAVSNLLDNAVKYSGGEVRVSVELAA
                     LGDRRVAVRVADSGVGIPPTQLKRIFKRFYRVQGDFVARVKGTGLGLFIVRSIVERHG
                     GRVFAESAGLGRGSTFTIQLPRA"
     gene            9380..>10012
                     /locus_tag="VD968_17775"
     CDS             9380..>10012
                     /locus_tag="VD968_17775"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYE16292.1"
                     /translation="MRAGAVLIVEDEKHLADGLRYNLEAEGYEVETAGDGESALAMLL
                     GGGRAFDAVVLDVMLPGADGFAVASALRGAGQFVPVLMLTARGRPEDVLRGFESGADD
                     YLPKPFELSVLIARIKGLIRRREWFHLDRGGAPAAAHDGGESFSFGGRTIDFEAFELR
                     VRGQTVRLTLMEASVLRYLIRHEGRVVSRKSLLEEVWDLRDDTSTRAIDNF"
BASE COUNT         1637 a         3548 c         3278 g         1549 t
ORIGIN      
        1 tggaactcga tcatcacgcc gctcagctcg aaggtcagca cgtcgaggtc gccgtcgttg
       61 tccacgtcgc ggatcgcggg aatgtcgacg ttcgtcactt tcagggtgtc gaaaagattc
      121 gtgctgttcg gcgtgaggtt gctctgcagc ggaaactcca cgagctggaa cgacaagccg
      181 cccgcagctc gggcaccacg gtctggacgg gctcgaacat ggtcgtcctg ggcggcacca
      241 cctctatcac cgtcgcgggt gccatttacg acccttcgac tgacatctgg aaggcgatcc
      301 cggccaccaa cccgcctacc tcctacaccg gcgatcgggt ggtctggacg ggcaaggaga
      361 tattcttctg gggcggcatc aacaacacca cgggcaagag gggcggactc tacaacccca
      421 cgaccaatac ttggcgccag cccaacacct tcaacgcccc ctcggagcgc aacaacttca
      481 cgatggtctg gacgggcaag gaggtcatcg tctggggcgg cttcgaaggc aacaccgtca
      541 cgctcaacac gggcgggcgc tacaacccgg agaccgatac ctggacgccg acctcgacca
      601 acggcgcggc cgactcgcgc tacggccaca cggccgtctg gactggcacc gagatgatcg
      661 tcttcggcgg cgacagccgc cccataggcg gtacaggcaa catggtcaac acgggcgggc
      721 gctataaccc ggagaccgac tcgtgggtgc tgacctcgac ggcgggcgcc ccgttgaaga
      781 ataaccacac ggccgtctgg acgggctcgg agatgttcgt ctggggcggc cgctacatct
      841 cgccgggcgt cttccgtgag gccgcgcgct acaagccttc gaccgactcg tggatcccga
      901 ctaacaatca ggactccgcc cccggcggcg aagtcggagt gtggaccggc gctgagctgc
      961 tcgtctgggg caagaaaccc ccgtgcagcg ccgggtgcaa cggcacgggc gggcgctaca
     1021 accccgcgac caacgtatgg agcccgatga gccacacggg cgcgcccggc ggggacggcg
     1081 tcgcctactc cagcgccgtc tggactggca aggagatgtt cctcctgggc cggcgctaca
     1141 acccgctgac cgacacgtgg gctcaggctt ccaccgtcgg cgcgcccgcg gacaagagcg
     1201 tcgcagtctg gactggcaag gaggttctcg tctggggcgg cggggccacc cctgagaaca
     1261 acccggcgcc ggccggcggc cgctacaacc ccgagaccga cacctggagc cccatggcga
     1321 cggcgggcgc gccctccgcg cgcacgatgc actcggcggt ctggactggc tccgagttgc
     1381 tagtctgggg cggcagaggg tacttctccg actccgggac aaacgcgggc ggccgctata
     1441 accccgagac cgacacctgg cggcccatgg cgacggcggg cgcgcccgaa atgcgcctct
     1501 ggaactcggc cgtctggacg ggctcggaga tggtcatctg gggcggcatg ggttccgcca
     1561 ccgacgcgtc gcgctggctc aacacgggcg cgcgctacaa ccccgtctcc gacacgtggc
     1621 agccgacctc gaccgaaggc gcgccgcagg ggcgcgcgta ccaccgcgcc gtctggaccg
     1681 gctcgcagat gatcgtctgg ggcggtctcg tccccgtcac gtggacgggc agcggcgacc
     1741 ccgtctacac gggcgcgcgt tataacccgg cgaccgacgt ctggacgccg acgagcctgc
     1801 aaagcgcggc gagccggcgc caatcgcacg tgcaggtctg gaccggcaca cagatgatcg
     1861 tcttcggcgg gacgggcccg agcggagcgg cgaagctgga cggcgccgtc tacaacgcgc
     1921 ccggcagcac cacgcccggc aacctccccc cgaccgtgag cctcacgtcg ccggccggcg
     1981 gcactggcta ccagtcgggc gacaccgtcc ggctcgccgc ggaggtctcc gacgccgacg
     2041 gcacggtgac gaccgtccgc ttctacgcca acggccagct cgtcggcgcc gacacgcagg
     2101 cgcccttcgc cttcgactgg actgaggtgc gcggcggcga ctacgcgctg acggcgacgg
     2161 cgaccgacga cggcggcgcg gaggcgcgct cctcggcggc caacatcacg gtcgcgccga
     2221 gcacggcgcc gcccggctgc gtgctcacgg ccccggccga cggctcaact tacgcctacg
     2281 gcgcctccgt ccggatggag gcgacgatga cgcccaaccg cgaccgcagc atcttgcggg
     2341 tcgagttcct cgtggacggc cagatgttca ccttctacga gcctccgacc tacaacccgc
     2401 cgtactgggc cctctggacg gccgacgcgt cggggacgcg cagcctcacc gcgcgctgca
     2461 ccgacaacaa gggcggcgtg acgacctcgg ccccgaaggt catcaccgtg aacgagcagg
     2521 gcttctcgat tagcggccag ctgcttgagt ccatcaacgt ccccatcacc aacgtccgcc
     2581 tccgcctcga cggcccggcc ggcaccgcgc cgcggtacgt cataacttcc gtcgccggca
     2641 acggcaacta ctacttcggc ggcctcaagg ccggcgagac ctacacggtc acgcccgagg
     2701 ccggcgcctg gcgctggtcg cccgacagca tgaccttcac cgcgatctcg aagagctgga
     2761 cgctccagca cttctacgga acgcgctcgg gctacgccat ctcgggccgg ctcacggacg
     2821 cgggcggcaa ccccatctcc ccggcgaccg tctacatgag cggctcgagg aacgcctcgg
     2881 cggccgtcgg caccgacggc acgtacatct tctataacct ggcgccgggc ggcacttaca
     2941 ccgtccagcc cgccaagaac ctctacacgt tcgcgccgaa ctcccgcacc ttcgagaacc
     3001 tctcggcgga gcagacggcc gacttcaccg gcacggcgca ggcgaagacc tacgccgtcg
     3061 gcggccgggt cgtggacgac cagggcgcgc ccgtcgtggg cctcaccgtc cggctcggga
     3121 ccgtgcgcgt aggcagcacg cagtaccgca cgaccgacgc cgacggccgc tacagcttcg
     3181 acaccgtgca ggagggcgag accgtctcgg tctccgcgca agactcgaca ggcttctacg
     3241 tcttcgcgcc cgagggtagg acgtactaca acatcgcggc ggacattacc gacgcggact
     3301 tcgtcgccaa caagcgcacg ttcagcatcg cggggacgct gacgggctcg aacggcatgc
     3361 cgctctaccc ggcgaccgtt accgtgacgg gctcggcgac ggccaccgtg caggtcaact
     3421 cgcagggctc ttacttcatc aacaacctgc cgcggggcgg cgactacacc atccgcccgt
     3481 cgaaggagca ttacgacttc acgccggcgg agaagacgta cacggcgctg gccgagtaca
     3541 tggtcgcgga cttcaagggc acgcgccgca ccaacgccat cagcgggcgc gtgacctcgg
     3601 gcggcggggg cctcgagggc gtgaccgtca cgctctccgg cacgcagacc gcgctggccg
     3661 tgaccgacgc gcagggcaac taccgcatcg gcgtcctcgc gggcggcacc tacgaggtca
     3721 agccctcctt gcagggctac accttcacgc ccgtgagcca gtcgttcccc aacatcagcg
     3781 ccgaccagac cgcggacttc gccgcggcgg ccctgcagac gccggccgag ccggcgcggt
     3841 tcgtcatcgc cgatgtcgcg ccgttcgagg aaggcgcgac gagcatcgtc gtgaccatcc
     3901 gccgttcggg cgacgcgtcg cagcccgcct ccgtggatta tgagacggcc gacggcactg
     3961 cgcggcaggg ctacgactac atgctcgcgc gcggcacgct gcgcttcgcg gccggcgagg
     4021 ccgagaagca ggtcgcggtc atcatcatca acgacgcgca cgacgaagcg gacgagacct
     4081 tcacgctcac gctcacggcc ccgacgggcg gcatggagtt gaacgcgctc gcctcggcgc
     4141 agctcgtcat ccgcggcgcg gcggaagtct cgcagtcgca gaacccggcc gacgacgtac
     4201 gcttcttcgt ccgccagcac tacgccgact tcctcaaccg cgtccccgac gaggccggcc
     4261 tcgactactg ggcgcgcggg attgagtcgt gcggcgcaga ccaacagtgc cgcgaagtta
     4321 aacgaataga cacgagcgcc gccttcttcc tctccataga gtttcaggag accggcttcc
     4381 tcgtctatcg gttacagaag gcgaccgacg ctcagatgcc gcgctacgct gagttcctgc
     4441 gccaggcgca ggagataggc agcggcgtcg tcgtcgggaa gccgggctgg gcggagaaga
     4501 tggaggcgaa caagcgcgag ttcgtcgagc gctggtcgca gaacgatgcc ttcaaggccc
     4561 gttactcggc gacgacgggg gagcagtacg ttgacgccct catcaccaac acgggcgtcg
     4621 cgctcccgcg cgagttccgc gactcgctcg cggcgtcgct cgccggcggc gcgttgacgc
     4681 gcggcgaggt gctgcgcgcc gtggccgagc acgagtctgt caggcaggcc gagctcaaca
     4741 aggctttcgt cttgatgcag tacttcggct acctcaggcg caacccggac gacccgcccg
     4801 acacggggat gggcggcttc aacttctggc tcaagaagct cgactcggcg ggcggcgact
     4861 accgccgcgc cgagatggtc agggccttca tagactcaat tgagtaccgc cgccgcttcg
     4921 cgccctgacg cgaggagggc agcagcccgg agactcgggg gcggcgcgtt cgcgtgccgc
     4981 ccttcgcttt ttctgcggcg cgtttacgct gaaggcggcc ctttggtaaa gtgtcgcccg
     5041 gtcgctattc gacgccgccg agggacgctt ctgatgcaaa ggcccttgag gttcgacggc
     5101 ttccggcctt cgtcggagaa ggccagccgc atagcctcgc gcatacgctc atccgacagc
     5161 aaggccgaga cgctcctgcg cagcagcgtc tggcggctcg gcctgcgctt ccgcaaaaac
     5221 gtccgcgcgc tgcccggcaa gcccgacctc gtcttcccgc gcgagcgcgt cgccgtcttc
     5281 tgcgacggcg acttctggca cggccgcaac tgggaagaga agcgccgcaa gctcaaggag
     5341 ggctcgaacg ccccctactg gctctccaaa atccacgcaa acatgcagcg cgacgagcgc
     5401 cacaacagcc aactcgcggg cgacggctgg cgcgtgctca ggttctggga gtccgacatc
     5461 ctcacagacc ccgcacgcgc cgcctccgag gtcgcggccg ccgtcgccga gagaaggcaa
     5521 aactcaaaag ggcaggagcg cgcacgagca tgactgcgcc gcccggcgaa ggtctctcgg
     5581 tcttgagctt ctttagcggc gggggcggac tggacctcgg cttccaccgc gccggcttcc
     5641 gcgtcgtctt cgcgagcgac atcgccccgc tcttctgcaa aaccctcgaa gcgaaccgcg
     5701 gcaggtattt ccccgacgac atgcgcgtcg tcgccggaga catacgacgc gtcgagccgg
     5761 acgggctgcc gcgcggcgtt gacctcgtca tcggcgggcc gccgtgccag tcgttctctg
     5821 ccttcggccg ccgcgcgggc ggcgccgccg gccgcttgga cgagcgcggc actctcttcg
     5881 aggcttactg ccgtttgatt gaggcggtga agccgcgcgc cttcctcttc gagaacgtgc
     5941 gcggcatact cggcacgcac aaggggcgcg actggcagga gatagttcgg gcgttcagcc
     6001 gcatcggcta cgccgtctcg caccgcatac tcgacgccgc cgactacgga gtgccgcagc
     6061 atcgcgagcg cctcttcatg gtcggccaca agctcggcgg cgagttcctc ttccccgagc
     6121 cgacgcacgg ccccgactcg cccgcgcgcg cgccgcacgt gaccgcgggc gaggcgctcg
     6181 cagggctcga agacgaaggc gaagccggct cgctctacct caagcgcggc aagtacgcgc
     6241 acctgctccc gctcgtccct cccggcggaa actacctctt cttcacagcc cgccgcggcc
     6301 accccgagcc cgtcttcgca taccgctcgc gcttctccga cttcctctac aaggccgacc
     6361 ccgcgcagcc cgtcaagacc atcatcgccc ggcccggcgc atactccggc cccttccact
     6421 gggagaaccg acgcttcacc ctggccgagt acaagcgtct gcaaggcttc cccgacgact
     6481 acgttttctg cggcggccgg caggacgtgg tcaggcagat aggcaactcc gtgagccccc
     6541 tcatcgccga ggcgctcgcc gccgcaatcg ccaaacagat cttcgggcgc gacgcgcgag
     6601 cgcgcctgct gcccgcttcg gcgcgcctct ccttcgacga gcggaaaggc gagaaggccc
     6661 gcaggacgcg ccgccagcac gacgtggcgg ccgcgcttag gatgcgcgac ggcgcggcgc
     6721 tgttctcatt ccgcgactac cgctcgcgcg tcgagcccgc cgaagatttg ccgcacggct
     6781 cgccgaacgt cacggcgcgc gccgacggac ggcgcgtgcg cctgaccgtg cgcgccgacg
     6841 cctcaaggga gctgttcgcg gaggtcggcc tcgaggtctg cggcgctgcg ctcgttgacg
     6901 ttaagctcta cggctcgcgg ccgcacgccg tgcagacgct ctggaacgcc gttgacgacc
     6961 tcgtcatacg ctccagcaac ttccactcgc tcttcgagct ctacggccac ttcaccgagc
     7021 cgcacccggt cttcaaagtc acgcgctttc gggctcgctc ggcccacccc atcgccgcct
     7081 tcgccgagca cgcctccgac ttccgcaact gttcgaggta cttccccgac gcgcaccttc
     7141 tcggcatgtt cggcgacgcc ttcggcactc gcgacttcac ggagctggtg gcggcgctgc
     7201 gcgcctaccg attcgacctg cgctgccacg agacgaacgt cgcaatcccg ccgggcgtct
     7261 atatggtcgc ctaccccttc acgctgccgc ggcgccgcct gatgagcttc ggcgtcgggg
     7321 ccgcacgcgc gtgaaagcct ccgccatttg tcacctactc ttgtcaggcc actaactttt
     7381 ctgtcggcgc gctccggccc gtcctccgat tacataacta ttacaaacgg ccgcgccttt
     7441 aattgttacg atggctgcgg agtgctcatc gaaggtgggc gggaaatttt cggggctcaa
     7501 ggagaggtga aatgggctgg gttaagcgaa tgagtcggcg cgaggggggc atcaactggg
     7561 cgacgttggt caccatggtc gtcttccacc tgggcgcaat cgcggcgctc ttcatgttta
     7621 gctggcaggg gctgctcgcg tgcctcctgc tctggtgggt ctcgggcagc ctcggcatcg
     7681 ggatgggctt ccacaggctt ctgacccacc gcggctacaa gacgcctaag ttggtcgaat
     7741 atttcctgac cgtctgcggt acgctcacgc tcgagggcgg cgcgattgac tgggtggtga
     7801 cgcaccgcat acaccacgcc aacacggacg tccgcggcga agacccgcac acgccgcgcg
     7861 acgggcgctg gtgggcgcac atgggctgga tacttacggg gacggcgcag cagcacggcg
     7921 aggccgtcat gtggcgctac gcgcccgacc tcatgcgcga ccgcttccac tcttggctca
     7981 accgcttcta cttcgtcccc gtcgtaatct cgggcgtcct gctcctcgcc ttcggcgggt
     8041 ggtctgtctt cttcatggcc ttcttccttc ggatagtcgt ggggctgcac gccacctggc
     8101 tcgtaaactc ggcgacgcac atgtggggga cgcgccggtt cgagacgacg gacgactcga
     8161 cgaacaacat gctgatcgcg ctcctgacct tcggcgaggg ctggcacaac aaccaccacg
     8221 cgcaccctcg ggccgcccgc cacggcgtcg cctggtacga gctcgacgtg aactggctag
     8281 ggattcgcgc gctgaagctc ctcgggttgg cgcgcgacat aaagctgata ccgcagcccg
     8341 cggcggcgcg gcggtctgaa gagagggcgc tccgccgggc ggcgtaaggc cgggcgcaac
     8401 agttggggcg ggcgggagag gggtgaagct ctcccgcctt tttactttag ccttttcagt
     8461 tccttagaat acggccgtgc cgataagcag ccgccgcaag tccgtcgcct tcttcatcac
     8521 gctcggctcg tgcctcgtcg ccctggccgt ggcgctcaac gtcggctggg ttctgctcaa
     8581 ctggcgcgag gtcgcgctgc tcgtgctggg gataatcttc ttcgtgctga taatcgtcgg
     8641 gctggtgctc aacacgacct tcctcatacg cgagatacgg cgcaacgagc agcacgacgc
     8701 cttcatcaac tctgtcacgc acgagcttaa gacgccgatt gcctcgatac gcctctacct
     8761 ggaaaccctg aagtcgcgcg atgtgggcga ggagcgccgc cgcgagttct acgacataat
     8821 gctcgccgac agcgaccgcc tgctgcgcac cgtcgagcag gtcttgcgcg cgggccgcgc
     8881 aggccaccgc cagcgctcgg cgctctcgac cgtcgttgac ctgggcgaag tggtgcgcga
     8941 gtgcatggag cttgcgcgcg tgcgctacaa gctggacggc gattcgctcg tcttcgccga
     9001 gcggctagac ggcgagccgg cgcgcgtcgc cggagacccg gaggaattgc agaccgcggt
     9061 ctccaacctt ttggacaacg ccgtgaaata ctcgggcggg gaggtgcgcg tctcagtcga
     9121 gctcgcggcg ctcggcgacc ggcgcgtggc cgtgcgcgtg gccgacagcg gggtgggcat
     9181 accccccaca cagctcaagc gaatcttcaa acgcttctac cgtgtgcagg gcgactttgt
     9241 ggcgcgggtg aaggggacgg ggctcgggct cttcatcgtg cgctcgattg tcgagaggca
     9301 cggcgggcgc gtcttcgccg agagcgccgg cctgggccgc ggtagcacct tcaccataca
     9361 actaccgagg gcataaaagt tgagagccgg cgcggtgctc atcgtcgagg acgagaaaca
     9421 tctggccgac ggcctgcgct acaacctcga ggccgagggc tacgaggtcg agacggcggg
     9481 tgacggcgag tcggcactcg ccatgctgct cggcggcggg cgcgcgttcg acgccgtcgt
     9541 gctcgacgtg atgctgccgg gcgcggacgg cttcgcggtc gcgtcggcgc tgcgcggcgc
     9601 ggggcagttc gtcccggtcc ttatgctcac ggcgcgcggc cgccccgagg acgtgctgcg
     9661 cgggttcgag tcaggggcgg acgactacct gccgaagccc ttcgagctct ccgtcctcat
     9721 cgcgcgcatc aagggcttaa tcaggcgccg cgagtggttc cacctcgacc gcggcggggc
     9781 gcccgccgcg gcccacgacg gcggcgagtc gttctcgttc ggcggcagga cgattgattt
     9841 cgaggcgttc gagcttcgcg tgcgggggca gaccgtgcgg ctgacgctga tggaggcgtc
     9901 ggtgctccga tacctgataa ggcacgaggg gcgcgtcgtc tcgcgtaagt cgcttctgga
     9961 agaggtctgg gacttacgcg acgacacgag cacgcgcgcc atagacaact tc
//
LOCUS       DASPKR010000669         2003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1920919, whole genome shotgun sequence.
ACCESSION   DASPKR010000669 DASPKR010000000
VERSION     DASPKR010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1920919"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2003
                     /locus_tag="VD968_17780"
     CDS             <1..>2003
                     /locus_tag="VD968_17780"
                     /inference="COORDINATES: protein motif:HMM:TIGR00757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HYE16293.1"
                     /translation="DSFERVVDEDEAAAEMGSMFKDARLQERLSDQTRAVEFDIEPTT
                     AAVEVGSLLGSGSGGGGFERVVDSDEAPGGQPPLQSVQPEVAASVSSLVEDEAGADAF
                     AASARSFERVSDDEAGAEASAAAKGGRRRAAAKGGASKKAASKKSAAKGGASKKAASK
                     KSAEKPAGKGASKSGSKKGGSKKSKAAADEVETEARQEAGSNDPSGFEDAEASVSSRP
                     PRGEFARRGGRRRRKPGGRPEGANGDSHSNGESEEAEVMTDAAPAAVEEQAEVPAAAE
                     AAPAPTRPGGRREREGRESRESRGREEGREGRGRDEAREGRGREGRGRDEGRGREEGR
                     GRDDRRGGRDNGGSSRRRDRQPTITDLLREGQEIIVQIAKEPIAAKGARITSHIALPG
                     RFLVYMPTIEHVGVSRKIESDQERSRLRKLIQAIVKEEDIPSGGFIVRTAGVGISEAD
                     LRDDARYLIRTWRDIRKSAERQKAPALAHKDLDLVQRLLRDQLSDDFTAIRCDSEEEY
                     LEVVEFVNRIQPRLVNRVKLYTREEPILEAFGVQAELDKAIKPRVWLKSGGYLVINQT
                     EALVAIDVNTGKFVGRGGTRLEDTITRTNMEAVEEIARQIRLRDLGGILVLDLIDMEE
                     RRNRARVLAALQDALRSDKSPTKVLSYNDFGLVIMTRKRVKQSL"
BASE COUNT          378 a          683 c          716 g          226 t
ORIGIN      
        1 gactccttcg agcgcgtcgt ggacgaggac gaggccgccg ccgaaatggg ctcgatgttc
       61 aaggacgccc gccttcagga gcgcctgagc gaccagaccc gcgccgtcga gttcgacatt
      121 gagcccacga cggccgccgt cgaggtcggc tcgctcctgg gctcgggctc gggcggcggc
      181 ggcttcgagc gcgtggttga cagcgacgag gcgccgggcg gccagccacc gctccagtca
      241 gtccagccag aagtcgccgc ttcggtttcg agcctcgtcg aggacgaggc gggcgccgac
      301 gccttcgccg cctccgcacg gtctttcgag cgcgtgagcg acgacgaggc cggggcggaa
      361 gcctcagccg ccgcgaaggg cgggcgcagg cgcgccgccg caaagggcgg ggcctcgaag
      421 aaggccgcgt cgaagaagag cgctgcgaag ggcggcgcgt cgaagaaggc cgcatctaag
      481 aagagcgcgg agaagcccgc gggcaagggc gcgtcgaagt caggctcgaa gaagggcggc
      541 tcgaagaagt cgaaggcggc cgccgacgag gtcgagaccg aggcgcggca ggaggccggc
      601 tcgaacgacc cgtccggctt cgaggacgca gaggcgagcg tctcctcgcg cccgccgcgc
      661 ggcgagttcg cgcgccgcgg cggccgtcgc aggcgcaagc ccggcggcag gcccgaaggc
      721 gccaacggcg actcgcactc gaacggcgag agtgaggaag cagaggtgat gacggatgcc
      781 gctcccgcgg ccgtcgaaga gcaagccgaa gtccccgccg ccgcggaagc cgcgcctgcg
      841 cctacgcgtc ccggcggccg ccgcgagcgc gagggccgcg agagccgcga gagccggggc
      901 cgcgaagaag gccgcgaagg gcgcggtcgt gacgaagcac gcgagggccg cgggcgtgaa
      961 ggtcgcggcc gagacgaagg ccgtggccgt gaggaaggcc gcggtcgcga cgacaggcgc
     1021 ggcgggcgcg acaacggggg cagcagccgc cgacgcgacc ggcagcccac catcacagac
     1081 ctcctgcgcg aggggcagga gataatcgtc cagatcgcca aggagcccat cgcggctaaa
     1141 ggcgctcgca tcacctcgca catcgcgctg cccggccgct tcctcgtcta tatgccgacg
     1201 attgagcacg tcggcgtctc gaggaagatt gagagcgacc aggagcgctc gcgcctgcgc
     1261 aagctcatac aggcaatcgt caaggaggag gacatcccct ccggcggctt catcgtacgc
     1321 acggccggcg tagggataag cgaggccgac ctgcgcgacg acgcgcgcta cctgatacgc
     1381 acctggcgcg acatacgcaa gagcgccgag cggcagaagg cgcccgcgct cgcgcacaaa
     1441 gacctcgacc tcgtgcagcg cctgctgcgc gaccagctct ccgacgactt cacggccata
     1501 cgctgcgaca gcgaggagga gtacctcgag gtcgtcgagt tcgtcaaccg catacagccg
     1561 cgcctcgtca accgtgtcaa gctctacacg cgcgaagagc cgatactcga agccttcggc
     1621 gtgcaggccg agctggataa ggccatcaag ccccgcgtct ggctcaagtc gggcggctac
     1681 ctcgtcatca accagaccga ggcgctcgtc gccattgacg tcaacaccgg caagttcgtc
     1741 ggccgcggcg gcacgcggct ggaagacaca atcacccgga cgaacatgga ggccgtggag
     1801 gagatagcgc gccagatacg cctgcgcgac cttggcggca tcctcgtcct cgacctgata
     1861 gacatggagg agcggcgcaa tcgcgcccgc gtgctcgccg ccttacagga cgcgctgcgc
     1921 tccgacaagt cgccgacgaa ggtactctcc tacaacgact tcggcctcgt catcatgacg
     1981 cgcaagcgcg tcaagcagtc act
//
LOCUS       DASPKR010000670         2597 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1654376, whole genome shotgun sequence.
ACCESSION   DASPKR010000670 DASPKR010000000
VERSION     DASPKR010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1654376"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..867)
                     /locus_tag="VD968_17785"
     CDS             complement(<1..867)
                     /locus_tag="VD968_17785"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYE16294.1"
                     /translation="MTTTLTTTAEIVSYDPATGEEIGRVPLRSEGEARAAVARAREAQ
                     KAWGALGYRERGRVVMRARSLVLEEMDEIARLVARESGKPEAEALSMEIVPTLDLMQF
                     FARRTARLLKDEKLDIGLYRFLGRASKIVYRPLGVVAVISPWNFPWAIPLGEVVMALM
                     AGNAVVLKPSELTPFVALKIGEVFRRAGLPEGLLEVLTGDGRTGAALVEAGADKIMFT
                     GSVATGKRVAEAAARRLTPVVLELGGKDPMIVFEDADLGAAASAAVWGAFANSGQACA
                     SVERCYVQEGVAE"
     gene            984..2282
                     /gene="pepP"
                     /locus_tag="VD968_17790"
     CDS             984..2282
                     /gene="pepP"
                     /locus_tag="VD968_17790"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: protein motif:HMM:NF008131.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HYE16295.1"
                     /translation="MRRPQLEELMRRMEPNSVAILPSAREVTRSNDTEYRFRQSSDFY
                     YVTGFGEPDSIAVVAPSRPERYTLFVRPRDPEKEIWTGRRAGVEGAKETYGADAAFPV
                     EEFDAKLSELLDGARTLYYRLGDGRPDLDQTVIRQLARMRALGRKGARPPAAIVDPGT
                     ILHEMRLIKTDEEIALMQRSADIAAEAHREAMLAARPGVGEHEIEALIEYTFRRRGAL
                     APAYGSIVGSGANATILHYTSNDSVLKDGDLLLIDAGAEYRGYASDITRTFPVSGRFT
                     EAQREIYELVLDAQEQCIRMVAPGVTLDEMHDRSVEILTEGMVRLGLLEGEVGKLIEE
                     EGYKKFYMHRLGHYLGMDVHDVGPYQTDGGEPRPVEAGIVMTVEPGIYVSETAEGVPE
                     KYRGIGVRIEDDVLVTREGHLVLTDKAPKTVEEIEALMAR"
     gene            complement(2368..>2597)
                     /locus_tag="VD968_17795"
     CDS             complement(2368..>2597)
                     /locus_tag="VD968_17795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16296.1"
                     /translation="FDGVSEVNDYQCSLVLPKGQYKRANVPLTAPVALDDYSPQAIQA
                     MKDAVSSYTGEPGGEWAGIVSWINDNFPGGS"
BASE COUNT          431 a          902 c          867 g          397 t
ORIGIN      
        1 ctcggccacg ccctcctgca cgtagcagcg ctcgacggag gcgcaagcct ggccggagtt
       61 ggcgaaggcg ccccagacgg ccgcgctcgc cgccgcaccg aggtctgcgt cctcgaagac
      121 gatcatcggg tctttgccgc cgagttccaa cacgacgggc gtgaggcgcc gcgccgccgc
      181 ctcggccacc cgcttgccgg tggcgacgct gcccgtgaac ataatcttgt cggcgcccgc
      241 ctcgaccagg gccgcgcccg tgcgcccgtc gcccgtcagg acttcgagca gcccctcggg
      301 cagacctgcg cgcctgaaga cctcgccgat tttcaacgcg acgaacggag tcagctcgct
      361 cggcttcagc acgacggcgt tgccggccat tagcgccatt acgacctcgc cgagcgggat
      421 ggcccacggg aagttccacg gcgagatgac ggcgacgacg ccgagcgggc ggtaaacgat
      481 tttcgaggcg cggccgagga agcggtagag gccgatgtcg agcttctcgt ctttgagcag
      541 ccgcgccgtc ctgcgcgcga agaactgcat gaggtcgagc gtcggcacaa tctccatcga
      601 gagcgcctcg gcctcgggct tgcccgactc gcgggcgacg agccgcgcga tctcgtccat
      661 ctcttcgagc acgagcgagc gggcgcgcat gacgactctc ccgcgctcgc ggtagcctaa
      721 cgcgccccag gccttctgcg cctcgcgcgc ccgcgcgacg gcggcgcgtg cttcgccttc
      781 ggagcgcagg gggacgcgcc ctatctcctc gcccgtcgcc gggtcgtaag agactatctc
      841 ggccgtcgtc gtgagtgtcg tcgtcatgcc ccggtttcac ccccgcaggc cgcaatcatc
      901 acgcgggcgc gcccgctttg caacctctcc gcgctccgct aaactttcgc cgagcggatt
      961 ctcttttagc acggagggga cggatgcgaa gaccgcagct cgaagagctt atgcggagga
     1021 tggaaccgaa ctcggtggcg atactgccgt cggcgcgcga ggtgacgcgc tcgaacgaca
     1081 cggagtaccg cttccgccag tcgtccgatt tttactacgt gacgggcttc ggcgagcccg
     1141 actcaatcgc cgtcgtcgcg ccctcgcgcc cggagcgcta cacgctcttc gtgcgcccgc
     1201 gcgaccccga gaaggaaatc tggacggggc ggcgcgccgg ggtcgagggc gcgaaggaga
     1261 cctacggcgc cgacgcggcc ttccccgtcg aagagttcga cgcgaagctc tcggaactgc
     1321 tcgacggcgc gcgcacgctc tactaccgcc tcggcgacgg ccgtccggac ctcgaccaga
     1381 ccgtcatacg ccagctcgcg cgcatgcgcg ccctgggccg aaagggcgcg cgcccgcccg
     1441 cggcaatcgt tgaccccggc accatcctgc acgagatgcg cctcatcaag accgacgagg
     1501 agatagccct catgcaacgc tcggccgaca tagcggccga ggcgcaccgc gaggccatgc
     1561 tcgccgcccg ccccggcgtg ggcgagcacg agatagaggc cctcatcgag tacaccttcc
     1621 gcaggcgcgg cgcgctcgcg cccgcctacg gctcgattgt cggctcgggc gcgaacgcga
     1681 cgattctgca ttacacctct aacgactcgg tgctcaaaga cggcgacctg cttttgatag
     1741 acgcgggggc cgagtaccgg ggctacgcct ccgacatcac gcgcaccttc cccgtctcgg
     1801 gccgcttcac ggaggcgcag cgcgaaatct acgagctcgt gctcgacgcg caggagcagt
     1861 gcatccgcat ggtcgcgccc ggagtgacgc tcgacgagat gcacgaccgc tccgtggaga
     1921 ttctgaccga ggggatggtt cggctggggc tgctcgaagg cgaggtcggg aagctcatag
     1981 aggaggaggg ctacaagaag ttttacatgc accgcctcgg ccactacctc ggcatggacg
     2041 tgcacgacgt cggcccgtac cagaccgacg gcggcgagcc gcgccccgtc gaggcaggga
     2101 tagtgatgac ggtcgagcca ggcatctacg tctccgagac ggccgagggt gtgccggaga
     2161 agtaccgcgg cataggcgtc cgcatcgagg acgacgtgct cgtcactcgg gaaggccacc
     2221 tcgtcttaac tgataaggcg cccaagaccg tcgaagagat agaggcgctg atggcgcgtt
     2281 agaaagaaga cgacgggcga cgccaaagcc acggggacgg ctcccggcgg gagccgtccc
     2341 cgtggctttc ttcttcgtcg gagccgctca ggagccgcca gggaagttgt cgtttatcca
     2401 gctcacgatg ccggcccact cgccgcccgg ctcgcccgtg tagctgctta cggcgtcctt
     2461 catggcctgt atcgcctgcg gcgagtagtc gtcgagtgcg acgggggccg tgagcgggac
     2521 gttggcgcgc ttgtactgcc ccttcgggag gacgagtgag cactggtagt cgttcacctc
     2581 ggagacgccg tcgaaca
//
LOCUS       DASPKR010000671         3936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1921278, whole genome shotgun sequence.
ACCESSION   DASPKR010000671 DASPKR010000000
VERSION     DASPKR010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3936)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3936
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1921278"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(62..1078)
                     /gene="holA"
                     /locus_tag="VD968_17800"
     CDS             complement(62..1078)
                     /gene="holA"
                     /locus_tag="VD968_17800"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR01128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HYE16297.1"
                     /translation="MPLITREELKRELKGGTVRPLYLLFGPEDYLRDEAARAISGAAL
                     EGSALREFNESAFSLATADVQQAIAAAEQLPMMGGRRVVRVTDFSRLREADEGALARY
                     VSRPVETSVVLFVADDLDKRRKLSKALMEACAAVEFAPLSDGELAAWAKDRLRRLGAT
                     ADERALRHTVALAGPDVRRLAAELEKLATAALPSGHITAELVESLVGRSRELSNFELT
                     DHLIARNRRRALETLSRLLDDGAEPVALIGLLASSFHRLALAKDMMARGAPEQDVFNV
                     VKMPFSQRKEFLATARRADASELDRRIRRIAEADLAIKTSLGGGGPKGARLQLEMLVC
                     ELSA"
     gene            complement(1097..1651)
                     /gene="lptE"
                     /locus_tag="VD968_17805"
     CDS             complement(1097..1651)
                     /gene="lptE"
                     /locus_tag="VD968_17805"
                     /inference="COORDINATES: protein motif:HMM:NF016290.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HYE16298.1"
                     /translation="MSLNAKVLRAAALAALVLLSAGFRECYKPVRRSGLPAHVRTVAV
                     PAFQNNALRYRIEHRFTESVMNEIIRRGKGLRVQSETEGADVVVDGVVKNFAFYGVLL
                     DSRSRARIFEVTVTAAVTVRDRVKNRVLYDNQDYVFRGEFEFTDDPRSFFNEEDPAVE
                     RLSRAFAESLVSTLINGFGVNEDK"
     gene            complement(1727..2584)
                     /gene="folP"
                     /locus_tag="VD968_17810"
     CDS             complement(1727..2584)
                     /gene="folP"
                     /locus_tag="VD968_17810"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR01496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HYE16299.1"
                     /translation="MAREWKLARRSLPVGGRTLVMGVLNVTPDSFSDGGRFFDPALAR
                     GRAAEMVAEGADILDVGGESTRPGGEGVSAGEELRRVLPVVEALAGEISVPISVDTTK
                     AVVARAALAAGAEIVNDISGLRFDPSLADEAARARAGLVLMHSRGSFETMHTQEPVAD
                     ALAEVSRGWRLSVEEAERRGVGRESIALDPGIGFGKTPEQNVELLARLPELAAEFPDF
                     PLLVGTSRKSFIGRLLGGAPVGERLHGTMATVTAAVLGGAHIVRAHDVRAAVETVRVA
                     DAIRAAAGR"
     gene            complement(2677..>3936)
                     /gene="ftsH"
                     /locus_tag="VD968_17815"
     CDS             complement(2677..>3936)
                     /gene="ftsH"
                     /locus_tag="VD968_17815"
                     /inference="COORDINATES: protein motif:HMM:TIGR01241.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HYE16300.1"
                     /translation="GSDFVEMFVGVGASRVRDLFEQGKKNAPCIIFIDEIDAVGRHRG
                     AGLGGGHDEREQTLNQLLVEMDGFESNDGVIIMASTNRPDVLDPALLRPGRFDRRVVV
                     PRPDVRGREGILKVHTRKIPLGEDVDIGIVARGTPGFTGADLANLVNEAALNAARYNK
                     KIVTMADFELAKDKVLMGAERKSMVITNEEKRITAYHEAGHTLVGLKVPNADPVHKVT
                     IIPRGMALGVTQQLPEGDRHSYTKEYLLGQIAILMGGRIAEDVFLGSITTGASNDIER
                     ATELSRAMVCEYGMSDLGPLTFGKKEEQIFLGREISQHRDYSEDTAIKIDQEVKKIVN
                     DQYERAKGIIEENRDVMVRLAETLLERETLDSVQIRRIIAGLPLDDDQPETQTKDEGG
                     RPQLKEPSTSPLKPILPPITGGNPAPA"
BASE COUNT          586 a         1321 c         1368 g          661 t
ORIGIN      
        1 tgctcgacac cgacggggct cggcgcggct ggttggagcc cgacctgaag ccgctcgact
       61 tttaagcgga cagctcgcag acgagcattt cgagctggag gcgggcgccc ttcggccctc
      121 cgccgccgag cgaggtcttg atggctaggt cggcctcggc gatgcggcgt atgcggcggt
      181 cgagctctga ggcgtcggcg cggcgcgcgg tggcgaggaa ctctttgcgc tggctgaaag
      241 gcatcttgac gacgttgaaa acgtcctgct cgggcgcgcc gcgcgccatc atgtctttcg
      301 cgagcgcgag tcggtggaag ctactcgcga gcaggccgat gagcgcgact ggctcggcgc
      361 cgtcgtcgag gaggcgcgag agggtttcga gcgcgcggcg gcggttgcgc gcgatgaggt
      421 ggtctgtcag ttcgaagttc gaaagctcgc gcgagcggcc gacgagcgac tccaccagct
      481 cggccgtgat gtggcctgaa ggcagcgcgg ccgtcgcaag cttctcgagt tcggcagcga
      541 gcctgcgcac gtccgggccg gccagcgcca ccgtatgcct gagcgcacgc tcgtcggccg
      601 tcgcacccag acgtctgagc ctgtccttcg cccaggcggc aagctcgccg tcggagagcg
      661 gcgcgaactc gacggcggcg caggcttcca tgagcgcctt gctgagcttg cggcgcttgt
      721 cgaggtcgtc ggcgacgaag aggacgacgg aagtctccac ggggcgcgag acgtagcgcg
      781 ccagcgcgcc ctcgtcggcc tcgcgcagtc gcgagaagtc cgtgacgcgc acgacgcggc
      841 gcccgcccat catggggagc tgctcggcgg ccgcaatcgc ctgctgcacg tctgccgtgg
      901 ccaggctgaa ggccgactcg ttgaactcgc gcagggccga gccctcgagc gccgcgcccg
      961 agatggcgcg cgcggcctcg tcgcgcaggt agtcttccgg gccgaaaagc aaatagagcg
     1021 ggcgcaccgt cccgcccttt agctcccgct tcagctcctc gcgcgtgatg agaggcataa
     1081 agaggcacgc ggccggctac ttgtcttcgt tgacgccgaa gccgttgatg agcgttgata
     1141 cgaggctttc ggcgaaggcg cgggagaggc gctcgacggc agggtcttcc tcgttgaaga
     1201 agctgcgcgg gtcgtcggtg aactcgaact cgccgcggaa gacgtagtcc tggttgtcgt
     1261 agagcacccg gttcttgacg cggtcgcgca ccgtgacggc cgcggtcacc gtcacctcga
     1321 atatgcgcgc gcggcttcgc gagtcgagca gcacgccgta gaaggcgaag ttcttgacga
     1381 cgccgtcaac gaccacgtcg gcgccctccg tctcgctctg caccctcagc cccttgccgc
     1441 gccgtatgat ctcgttcatc accgactcgg tgaagcggtg ctcgatcctg tagcgcagcg
     1501 cgttgttctg gaaggccggg acggcgaccg tgcggacgtg cgcgggcagc cccgagcggc
     1561 gcacgggctt gtagcactcg cggaagcccg cggacagaag gacgagcgcg gcgagcgccg
     1621 ccgcgcgcaa gactttggcg ttcagagaca ttccgatgag ggacgatacg acacggcggc
     1681 ggcggatgac aagcgaggga gcgggctagg tcaaatggct gcggctctag cggccggccg
     1741 cggccctaat ggcgtcggcc acgcgcacgg tctcgacggc ggcgcgcacg tcgtgggcgc
     1801 ggacgatgtg ggcgccgccg agcaccgcgg ccgtaacagt tgccatcgtg ccgtgcagac
     1861 gctcgccgac gggcgcaccg ccgagcagcc gccctatgaa ggacttgcgc gacgtgccga
     1921 cgagcagggg gaagtcgggg aactcggcgg ccaactccgg cagcctcgcc aacagctcca
     1981 cgttctgctc cggcgtcttc ccgaagccta tgccggggtc gagggcgatg ctctcgcgcc
     2041 cgacgccgcg ccgctcggcc tcctctacgc tcaggcgcca gccgcgcgac acctcggcca
     2101 gagcgtcggc gacgggctcc tgcgtgtgca tcgtctcgaa agagccgcgc gagtgcatga
     2161 gcacgagccc cgcccgcgcg cgcgcggcct cgtccgcgag cgaggggtcg aagcgaaggc
     2221 ccgagatgtc gttgactatc tccgccccgg cagcgagcgc cgcgcgcgcg accacggcct
     2281 tcgtggtgtc cactgatatc ggcacgctaa tctcgcccgc gagggcttcg accacgggca
     2341 ggacgcgcct caactcttct ccggcactga cgccctcgcc gcccggcctc gttgactcgc
     2401 cgcccacgtc gagtatgtcg gcgccctcgg cgaccatctc ggcggctcgc cctcgggcga
     2461 gcgccgggtc gaagaagcgg ccgccgtcgc tgaagctgtc cggcgtcacg ttcaagacgc
     2521 ccatgacgag cgtgcgcccg cctacgggga gcgagcgccg cgcgagcttc cattcgcgag
     2581 ccatgcgctg aaggttaaaa ggtctgccgg aaaagttaaa ggggaagggg gttgaattcc
     2641 ccttcccctc gcgtaacgcc cccgtcggcg cggcgcttag gccggcgccg ggttgccgcc
     2701 ggtgatcggc gggagtatgg gcttgagcgg gctcgtcgaa ggctccttga gctgcggccg
     2761 tccgccctcg tccttagtct gggtctcggg ctggtcgtcg tcgagcggca ggcccgcgat
     2821 gatgcggcgt atctgcacgc tgtcgagcgt ctctcgctcc aggagagttt cggccaaccg
     2881 caccatcacg tcgcggttct cctcgatgat gcccttggcg cgctcgtact ggtcgttgac
     2941 gatcttcttg acctcctggt caatcttaat cgccgtgtcc tcggaatagt cccggtgctg
     3001 cgagatttcg cggccgagga aaatctgctc ctccttcttg ccgaaggtga gcggcccgag
     3061 gtcgctcatg ccgtactcgc agaccatcgc gcgcgacagc tccgtggcac gctcaatgtc
     3121 gttcgatgcg cccgtcgtaa tgctcccgag gaacacgtcc tcggcgatgc gcccgcccat
     3181 caggatggct atctggccca gcagatactc cttcgtgtag ctgtggcggt cgccctcggg
     3241 caactgctgc gtcacgccca gcgccatccc gcgcgggatg atcgtgacct tgtggacggg
     3301 gtctgcgttc gggactttaa gcccgacgag cgtgtgcccg gcctcgtggt aggcggtgat
     3361 gcgcttctcc tcgttggtga tgaccattga cttgcgctcg gcgcccatga gcaccttgtc
     3421 cttagcgagc tcgaagtcgg ccatcgtgac gatcttcttg ttgtagcgcg cggcgttcaa
     3481 tgcggcctcg ttgacgaggt tcgccagatc cgcgcccgtg aagccgggcg tgccgcgcgc
     3541 gacgatgccg atgtccacgt cctcgcccag aggaatcttg cgcgtgtgga ctttgaggat
     3601 tccctctcgg cctcgcacgt ccgggcgcgg gacgacgaca cggcggtcga agcggccggg
     3661 ccgcagcagc gccgggtcga gcacgtccgg gcggttcgtc gaggccatga tgatgacgcc
     3721 gtcgttcgac tcgaagccgt ccatctcgac gagaagttga ttgagcgtct gctcgcgctc
     3781 gtcgtggccg ccgccgaggc ccgccccgcg gtggcgcccg acggcgtcaa tctcgtcaat
     3841 gaaaattatg cacggcgcgt tcttcttgcc ctgctcgaag aggtcgcgga cgcgcgaggc
     3901 gccgacgccg acgaacatct cgacgaagtc ggagcc
//
LOCUS       DASPKR010000672        10264 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_495312, whole genome shotgun sequence.
ACCESSION   DASPKR010000672 DASPKR010000000
VERSION     DASPKR010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10264)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10264
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495312"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3123)
                     /locus_tag="VD968_17820"
     CDS             complement(<1..3123)
                     /locus_tag="VD968_17820"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HYE16301.1"
                     /translation="MPLFEIHSAERAEPEEPLSASVRQLEALTALAAAPRAGRELKQL
                     FAGLADTITALTDYRSCLVVLFDKEPPHRRRVLSHSSNIPREHVERSAQEPCPREEAA
                     RLVERGVRIDVGALGFAAYYPPSHYHLLEEFSANRFKSNLPHSRPRYGDEPWHEGDEL
                     FVPLVTHDGEFIGMIALDDPRSGRAPDRRSVLPAVAFARQTAQLIARQQDAERLEEQA
                     GREALINRITRAVRQSLDPLEVFRAGVDELGHHLGVDRCVLFMLDKEEGVARNRAEYT
                     APGVSPAGREYRIPLVAGLIEAIRDRGVLAFEDVENDPAIREVYEHILKPLGTRSIMY
                     AAIRVGDEVTGAFALSTVGEKRRWRASDIALARAVADQTGIAIRQAQLYQRAEATSAR
                     EGMVNRLGHRIRASLNLPEVLRAATHELGQALGASRVYLRPYDPERPGGSPVMYEYLA
                     EGCPSMKALTISYAEPLGRLLMSTQRTLVVDDAAAYAAGSPEVNAQVRDLALRNGAPS
                     KIICPLVVQGRFRGALCIHQTDRVRHWTKDEVALVESVAAQLATGIAQAELFEMVERA
                     KRTWEVTFDAMSDGIFIFGNDRRLARVNRAGAGMESAEPHELLGRRCCDILRTGSGAG
                     CIIERATAEGRGVTTEYTPEALGRPLLVTAEPMFEGSLQVGIVCTVRDLTELRQVEAV
                     ARERQSLLENVLESAREVICAVDPEGRVMWINSAGGVLNGQPKEALIGRHFLELIEED
                     DRGPALASFRRALEGEPQTVEARVAAPGGQTRHVVADSAPLVIEGRTTGVLTIARDIT
                     EQKQERERAAQADKLRALGQLATGVAHDFNNALAAILGRAQLLRRSTRDPEVARSLDI
                     IQTAAEDAAATVRRIRSFAQQSPGDELAPVDVGALLRDAVEITRTRWENDARARGLSY
                     DVRLCPGCELHTRGNASELREVFVNLIVNAIDAMPAGGRLTLGCRLADSGDRLQLLFS
                     DTGTGMTEEVRARIFEPFYTTKGAQGTGLGLFVSYGIVERHGGHITVASARGRGTTFT
                     IDLPCAEPPAA"
     gene            complement(3361..4512)
                     /locus_tag="VD968_17825"
     CDS             complement(3361..4512)
                     /locus_tag="VD968_17825"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE16302.1"
                     /translation="MLNGRTTSGALALLAALVVFGAALFATASAQQQEQTNDRPRRAG
                     DASPQQTPTPRPPADDETLDEDAVERVETDLTNILFTAIDRGRRFVTFLKRDDVRILE
                     DGVEQQIFTFQRETDRPLSLAILIDTSSSQERTLPEEKSAAQRFVDAVIRPSKDEVAV
                     VSFTGETTLEQGLTGSVARIRRAIERVEFVPPSGYVGGGLVVTTPGGVGGKGTPPISG
                     ENQSRAGSTAIWDALWVTSREVLSETSDKTRRAIILLTDGVDTSSRMKLQEAVDGALK
                     ADAIIYAIGIGDSFSFDGVDEGSLNKLTERTGGRAFFPRSEEDLRSAFGQIQDELRSQ
                     YLLAYSPSNKAKDGSFRKIQLEIVNPQLRGQNIRLTHRQGYFARGGATK"
     gene            complement(4534..5550)
                     /locus_tag="VD968_17830"
     CDS             complement(4534..5550)
                     /locus_tag="VD968_17830"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE16303.1"
                     /translation="MKLVRLWITFAAVALGLLAPVGPSAARRQQQQPAPPRQDEAQAD
                     DRPVYIREVRVPVSVLDKKNAAVTGLSQSDFLVFEDKVPMQIVSFREAKETEKLAVYI
                     GVLMDTSYSTAGKLKFEKEAAINFIDTVTRSRKDYAAFVTFDDDVNLRQDFTKNRDLL
                     ADSINAVKKPGNRTSLYDAVWQFCDEKMRSVGGGRRALVIITDGDDTYSRATLREAIE
                     IAQQTDTVIFAISTKGGFVGSTVPGVEAGLVKDSEDKDLQKLAEETGGRAFFSGDMLA
                     LERSFKRIGEELRTQYLISYRPTNDKYDGSRRTIEVRLANKQDGWKVRAKRGYRATKD
                     LVGQ"
     gene            complement(5752..6669)
                     /locus_tag="VD968_17835"
     CDS             complement(5752..6669)
                     /locus_tag="VD968_17835"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE16304.1"
                     /translation="MHDVIIIGAGPAGLSAALWCDDLGLDALLLEQEAEVGGQLLRVY
                     NRIENYLGAEAGNGRELRDRFAAQVEGREFDLWTGVDIESVDLRARRVSLRSGERLQS
                     IALIIATGVRRRRLGVPGEEEFAGRGVLESGARDRDAVAGEDVCVVGGGDAAAENALL
                     LAEVCPTVTLVHRGAKLSARPHLAERVRGEHRINVFTESTLQRIMGRDRVESIEILRA
                     GAIKPFRMAVRGVLIRIGVEPNTELFRGQIHTDGRGYAVTTGEHETSAEMVFAVGDVS
                     SPLAPTIAGACGAGATAAKVIASRVNKRP"
     gene            complement(6669..7283)
                     /locus_tag="VD968_17840"
     CDS             complement(6669..7283)
                     /locus_tag="VD968_17840"
                     /inference="COORDINATES: protein motif:HMM:NF015786.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYE16305.1"
                     /translation="MAADWDERYSRGEHTSEEPSRLLARAVELFEGGGARGEESPRAL
                     DIACGAGRHALFLASHGFDVTAVDASFVGVGLTRARAAKRGLRLVAVVADLERGEFAI
                     EPEGFDLVCDFYYLQRDLLPAARAGVRPGGLFVAAIHLDDGNPEARPGNPDFLLRPGE
                     LREEFGGWEILHYSETQGIDEDAGRHTRRSAELIARKPARAGRP"
     gene            complement(7302..8318)
                     /locus_tag="VD968_17845"
     CDS             complement(7302..8318)
                     /locus_tag="VD968_17845"
                     /inference="COORDINATES: protein motif:HMM:NF042562.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6687 family protein"
                     /protein_id="HYE16306.1"
                     /translation="MRFEYYHDGLLNVPKLSVDGTVDNAVHLSHWSGNETPEELRADT
                     STGIALNFVASPLRDRLTRGVEVVTNNHFDTDGVLSVWTVLAGARALPLRERLIAAAE
                     AGDFSEFTGADAVRASIVIQGADAPAPGAGLASPLARRLNGGAPVDEKRAYDLVLPEV
                     ERVIERTGEYEELWREGWALVEAALDSFARGASRVEEDAEARLSVVTLAPELFGPEGF
                     RPTRHVPPFTAIAHHARGEVFLIATPAEGGWSYRVDYPYYSWAVTVDRPAVARRDFSA
                     LVARLNEMEGDGDGARWRLDASELASAVKFAGADGSLRASRLEPDAVAAELRSALREL
                     RAVA"
     gene            complement(8347..8652)
                     /locus_tag="VD968_17850"
     CDS             complement(8347..8652)
                     /locus_tag="VD968_17850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16307.1"
                     /translation="MFESDLLDPYERLIGIEVLGRRVEVPEKNRLLRCFQYLSIDTIS
                     YGDFCWNGDCANCRIWYREPGDGCEQDKTALACRFDAREGLVVTRLDPHIKLKGINE"
     gene            8813..9034
                     /locus_tag="VD968_17855"
     CDS             8813..9034
                     /locus_tag="VD968_17855"
                     /inference="COORDINATES: protein motif:HMM:NF041212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uxx-star family glutaredoxin-like
                     (seleno)protein"
                     /protein_id="HYE16308.1"
                     /translation="MGLVIYIKPGCPYCQQARDHYKAAGVEWTEHDAQNDRARRAEMF
                     AYSGGDPTVPCIVEDGRYVQSGWGDPPRG"
     gene            9168..>10264
                     /locus_tag="VD968_17860"
     CDS             9168..>10264
                     /locus_tag="VD968_17860"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HYE16309.1"
                     /translation="MVGRTLLNYRITEKLGAGGQGTVYKATDERLGRTVVIKVLSPEL
                     TAREVNLKRFEREAQLASSLDHPNICTIYGLHEADGLHFIAMQYIDGRNVRELVAGHP
                     LAVNSALSIAYQVADALTAAHSKGVIHRDIKAGNVMVTDAGLAKVLDFGLAKLLDENQ
                     QDKKKGSDIHLTELGVPYGTATYAAPEQATGQRVDHRADIFSTGVLLYEMLAGTWPFR
                     GQTSIEVRYAVLHDTPRPINEARNEETSPRLQEIVDRALAKNPDERYQRMSEMRDELR
                     AAMREAAGLSADPGIDTSGIPGELVPVAPRRRGQGGGGVGRTFRRWWRSLTGGEAQPT
                     SLPPASRTSPPGSGAHAPPSPHVSQFAPEKS"
BASE COUNT         1530 a         3434 c         3668 g         1632 t
ORIGIN      
        1 ggcggcggga ggctcggcgc acggcaggtc tatcgtgaag gtcgtgccgc gcccgcgggc
       61 ggaggcgacc gttatgtggc cgccgtggcg ctcgactatg ccgtagctga cgaagagccc
      121 gaggcccgtc ccctgcgccc ccttcgtcgt gtagaacggc tcgaatatgc gcgcgcgaac
      181 ctcctcggtc atccccgtgc cggtgtcgga gaagaggagt tgcaggcggt cgccggagtc
      241 ggcgaggcgg cagccgagcg tgaggcggcc gcccgcgggc atggcgtcta tggcgttgac
      301 gatgaggttg acgaagacct cccgaagctc ggaggcgtta ccgcgcgtgt gcagctcaca
      361 gccggggcag aggcgcacgt cgtaactcag gccccgcgcg cgcgcgtcgt tctcccagcg
      421 cgtgcgcgtt atctcgacgg cgtcgcgcag cagcgctccc acgtccacgg gcgccagttc
      481 gtcgccgggc gactgctgag cgaaggagcg tatgcggcgc acggtggcgg cggcgtcctc
      541 ggcggcggtc tgtatgatgt cgaggcttcg ggcgacctcc gggtcgcggg tcgagcggcg
      601 cagcaactgc gcgcggccga gtatggcggc gagcgcgttg ttgaagtcgt gcgcgacgcc
      661 cgtggcgagc tggccgagcg cgcgcagctt gtcggcctgc gccgcgcgct cgcgctcctg
      721 cttctgctcc gtgatgtcgc gcgcgatggt cagcacaccc gtggtgcggc cctctatgac
      781 gaggggcgcg ctgtcggcga cgacgtggcg cgtctgcccg ccgggcgccg cgacgcgcgc
      841 ctcgaccgtc tgcggctcgc cttcgagcgc gcggcggaag ctcgcgagcg ccggcccgcg
      901 gtcgtcctcc tcgatcagct cgaggaagtg gcggccgatg agcgcctcct tcggctgtcc
      961 gttcagcacg ccgcccgcgc tgtttatcca catgacgcgc ccctcggggt caacggcgca
     1021 gattacctcg cgggcgctct caaggacgtt ctccagtagc gactggcgct cgcgcgcgac
     1081 ggcctcgacc tgccggagct ccgtgaggtc gcgaacggtg cagacgatgc ctacctggag
     1141 tgagccctcg aacatgggct cggccgtcac cagcagcggg cggccgagcg cctccggggt
     1201 gtactcggtc gtgacgccgc gcccctcggc cgtggcgcgc tcgatgatgc agccggcccc
     1261 gctgcccgtg cggagtatgt cgcagcagcg gcggcccaga agctcgtgcg gctcggccga
     1321 ctccatgccg gcgcccgcgc ggttgacgcg ggcgaggcgg cggtcgttgc cgaagatgaa
     1381 aatgccgtcc gacatcgcgt cgaaggtgac ttcccatgtg cgcttggcgc gctcgaccat
     1441 ctcaaacagc tcggcctgcg ctatgcccgt cgcgagctgc gcggcgaccg actcgacgag
     1501 cgcgacctcg tccttcgtcc agtgacgcac ccggtcggtc tggtgtatgc agagcgcgcc
     1561 gcggaagcgc ccctgcacga cgagcgggca gattatcttc gacggcgcgc cgttgcgcag
     1621 ggcgaggtcg cgcacctgcg cgttgacctc cggcgagccc gcggcgtaag cggccgcgtc
     1681 gtccacgacg agcgtgcgct gcgtgctcat cagcagccgc cccagcggct cggcgtagga
     1741 gatggtgagc gccttcatgc tcgggcagcc ctcggccagg tactcgtaca taacgggcga
     1801 gccgccgggc cgctcggggt cgtaggggcg caggtaaacg cgcgaggcgc cgagcgcctg
     1861 tcccagctcg tgcgtggcgg cgcggaggac ttccggaagg ttgagcgagg cgcgtatgcg
     1921 gtggccgagg cggttgacca tcccctcgcg cgccgaagtc gcctcggcgc gctggtagag
     1981 ctgcgcctgc ctgatggcta tgccggtctg gtcggcgacg gcccgcgcga gcgctatgtc
     2041 cgaggcccgc cagcgcctct tctcgccgac ggtcgagagc gcgaaggcgc ccgtcacctc
     2101 gtcgcccacg cgtatggcgg cgtacatgat cgagcgcgtc cccagcggct tcagtatgtg
     2161 ctcatagact tcgcggatgg cggggtcgtt ctcgacgtcc tcgaaggcga gcacgccgcg
     2221 gtcgcgtatg gcctcgataa ggccggcgac gagagggatg cggtactcgc gcccggcggg
     2281 cgacaccccc ggcgccgtgt actcggcgcg attgcgggcg acgccctcct ccttgtcgag
     2341 catgaagagc acgcagcggt caacgccgag gtggtggccc agctcgtcaa cgcccgcgcg
     2401 gaagacctcc agcgggtcga gcgactggcg gacggcgcgc gtgatgcggt taatcagggc
     2461 ctcgcggccc gcctgctctt cgaggcgctc ggcgtcctgc tggcgggcga ttagctgcgc
     2521 ggtctggcgc gcgaaggcga ccgcgggcag cacgctgcgg cggtcgggcg cgcggcccga
     2581 gcgcgggtca tcgagggcga tcatgccgat gaactcgccg tcgtgcgtga cgagcgggac
     2641 gaacaactcg tcgccttcgt gccacggctc gtcgccgtag cgcggccgcg agtgcggcag
     2701 gttcgacttg aagcggttcg cggaaaattc ttcgagcagg tggtagtggc tcggcgggta
     2761 gtaggccgcg aagccgagcg cgcccacgtc aatccggacg ccgcgctcga ccaggcgcgc
     2821 agcctcttcg cgcgggcagg gctcctgcgc ggagcgctcg acgtgctcgc gcgggatgtt
     2881 cgacgagtgc gagagcacac ggcggcggtg gggcggctcc ttgtcgaaga ggacgacgag
     2941 gcaggagcgg tagtccgtga gcgccgtgat ggtgtcggcg aggccggcga agagctgctt
     3001 gagctcgcgg ccggcccgcg gggctgcggc cagggcggtt aacgcctcga gctggcgcac
     3061 cgaagcgctc aagggctctt cgggctccgc gcgctcggcg gagtgaatct cgaacagcgg
     3121 catagcgttg ttctactgac cagctaaact ttattggctg cgggcgcccg ggaaagattt
     3181 tcgggaggag gggctgtcag ggttcctctc gcgaaggctt gggcgctctg aaaacgattt
     3241 ctcgactcgg gcggcggcgc taggttgagg cggcgctgcg cgctaattcc cttcggaagt
     3301 ataacaaagc gccgaaaggg ctgtcaccac aaaatcaggg ctgcgggcgg ccgccctggc
     3361 ttatttcgtc gcgccgccgc gggcgaagta gccctgccgg tgggtgagcc tgatgttctg
     3421 cccccgcagc tgcgggttga caatctccag ctggattttg cggaagctcc cgtccttagc
     3481 cttgttcgaa ggcgagtagg ccagaaggta ctgcgagcgc agctcgtcct gaatctggcc
     3541 gaaggcggag cggaggtctt cctcgctacg cgggaagaag gcgcgaccgc ccgtccgttc
     3601 ggtgagcttg ttgagcgagc cctcgtccac gccgtcgaag ctgaagctgt cgccgatgcc
     3661 tatggcgtag atgatggcgt cggccttgag cgccccgtca accgcctcct gaagcttcat
     3721 gcggctgctc gtgtcaacgc cgtcagtgag gaggattatg gcgcggcgcg tcttgtcgga
     3781 agtctccgag agcacctcgc gcgaggtgac ccagagcgcg tcccatatgg ccgtggagcc
     3841 ggcgcgcgac tggttctcgc cggagattgg cggagtcccc ttgccgccga cgccgcccgg
     3901 cgtggtgacg acgaggccgc cgccgacgta gccggagggc ggcacgaact cgacgcgctc
     3961 gatggcgcgg cgtatgcgcg cgacgctccc cgttaggccc tgctcgagcg tcgtctcgcc
     4021 ggtgaaggag acgacagcca cctcgtcctt gctcgggcgt atgacggcgt caacgaagcg
     4081 ctgggccgcc gacttctcct cgggcagcgt gcgctcctgc gagctgctgg tgtctatgag
     4141 tatggcgagc gagagcggcc ggtcggtctc gcgctggaaa gtgaatatct gctgctcgac
     4201 gccgtcctct aaaatgcgca cgtcgtcgcg cttgaggaag gtgacgaagc ggcggccgcg
     4261 gtctatcgcc gtgaagagga tgttggtgag gtcggtctcg acgcgctcga ccgcgtcctc
     4321 gtcgagcgtc tcgtcgtccg cgggggggcg cggcgtgggc gtctgctgcg gcgaagcgtc
     4381 gcccgcgcgg cgcgggcggt cgttcgtctg ctcctgctgc tgcgcgctcg cggtggcgaa
     4441 gagcgccgcg ccgaagacga cgagggccgc gagcaacgcg agcgcgccag aggtggtcct
     4501 gccgtttagc atctacttcc ttttcgtcaa accctactgc cccaccaagt ccttcgtggc
     4561 gcggtagccg cgcttggcgc gcaccttcca gccgtcttgc ttgttggcga gcctgacctc
     4621 gatcgtgcgg cggctgccgt cgtacttgtc gttcgtcggg cggtaggaga tcaggtactg
     4681 cgtgcgcagc tcctcgccta tgcgcttaaa ggagcgttcg agcgcgagca tgtcgccgct
     4741 gaagaacgcg cgcccgcccg tctcctccgc cagcttctgc aagtccttgt cctccgagtc
     4801 cttcacgagg ccggcctcga cgccggggac ggtgctcccg acgaagccgc ccttcgtgga
     4861 gattgcgaag atgacggtgt cggtctgctg cgctatctcg atggcctcgc ggagcgtggc
     4921 gcggctgtaa gtgtcgtcgc cgtcggtgat gatgacgagg gcgcggcggc cgccgccgac
     4981 cgagcgcatc ttctcgtcgc agaactgcca gacggcgtcg tagagcgagg tgcggttgcc
     5041 cggcttcttg acggcgttta tggagtcggc gaggaggtcg cggtttttgg tgaagtcctg
     5101 ccggaggttc acgtcgtcgt cgaaggtgac gaaggcggcg tagtccttgc gcgagcgcgt
     5161 cacggtgtca atgaagttga tggccgcctc cttctcgaac ttgagcttgc ctgccgtcga
     5221 gtaggacgtg tccatcagca cgccgatata gacggcgagc ttctcggtct ccttcgcctc
     5281 gcggaacgag actatctgca tcggcacctt atcctcgaag acgaggaagt ccgactgact
     5341 gaggcccgtc acggccgcgt tcttcttgtc gagcacggag acggggacgc gcacttcgcg
     5401 gatatagacg ggcctgtcgt ccgcctgcgc ctcgtcctgg cgcgggggcg cgggctgttg
     5461 ctgctgccgc cgcgcggcgc ttggccctac cggggcgagc agccctaggg cgacggcggc
     5521 gaatgttatc cagagcctga cgagtttcat actttgtgtt tcggcggagc gaagaaagcc
     5581 ggggacgctt ccgcgcccac gtttcgatgc cgtcggcgcg agaggtcgtt gcttagcttt
     5641 agacgacagt atagcggccg gcgattttta ccacaaaggc acgcaggcgc gaaaataaag
     5701 ccccgcgcaa cgcctttcgc gacttcgggc cttcgcggcg gaaatccaat cctacggcct
     5761 tttgttgacg cgtgaggcga tgactttggc ggcggtggcg cccgcgccgc acgcgccggc
     5821 gatggtcggg gcgagcgggc tcgacacgtc gccgacggcg aagaccatct cggcgctcgt
     5881 ctcgtgctcg ccggtcgtga cggcgtagcc gcgcccgtcc gtgtgaatct gcccgcggaa
     5941 aagctctgtg ttgggctcga cgccgattct tataagcacg ccgcgcaccg ccatgcggaa
     6001 gggcttgatg gccccggcgc gcaggatttc gattgactcg acgcggtcgc gccccatgat
     6061 tctctgtagc gttgactcgg tgaagacgtt tatgcggtgc tcgcctcgca cgcgctcggc
     6121 gagatggggc cgggcgctaa gtttcgcgcc gcggtggacg agcgtgaccg tcgggcagac
     6181 ttcggcgagc aggagcgcgt tctcggccgc ggcgtcgccg cccccgacga cgcaaacgtc
     6241 ctcgccggcc accgcgtcgc ggtcgcgcgc gccggattcg aggacgccgc gccccgcgaa
     6301 ctcctcctcg ccggggacgc ccaagcgcct gcgccggacg cccgtcgcga tgatgagcgc
     6361 gattgattgg aggcgctcgc cgctgcgcag gctcacgcgc ctggcgcgca ggtcaacgct
     6421 ctcgatatcg accccagtcc agaggtcaaa ctcgcgcccc tcgacctgcg cggcgaagcg
     6481 gtcgcgcagc tcccgcccgt tcccggcctc cgcgccgagg tagttctcta tgcggttata
     6541 gacgcgcagg agctggccgc cgacttcggc ctcctgctct aacaaaagag cgtcgagccc
     6601 gaggtcgtcg caccagagcg cggcggagag cccggccggg ccggcgccaa tgatgataac
     6661 gtcgtgcatt acggtcggcc ggcgcgggcg ggcttgcgcg cgataagctc agcggagcgg
     6721 cgcgtgtgcc ggcccgcgtc ctcgtctatg ccttgagtct cggagtagtg gagaatctcc
     6781 cagccgccga actcttcgcg aagctcgccg ggcctgagca ggaaatcggg attgccaggg
     6841 cgcgcttcgg gattcccgtc gtcgaggtgt atggccgcga cgaagaggcc gccgggccgg
     6901 acgcccgcgc gtgccgcggg cagaaggtcg cgctggaggt agtagaagtc gcagacgagg
     6961 tcgaagcctt cgggctcgat tgcgaactcg ccgcgctcga ggtctgcgac gacggctacg
     7021 agccggaggc cgcgcttcgc tgcccgcgcc cgcgtgagcc cgacgcccac gaaggaggcg
     7081 tccacggccg tcacgtcgaa gccgtgcgag gcgaggaaga gcgcgtggcg gccggccccg
     7141 caggctatgt cgagagcgcg cggcgactcc tcgccccgcg cgcctccgcc ctcgaacagt
     7201 tccacggcgc gggcgagcag ccggctcggc tcctcgctag tgtgctcgcc gcggctgtat
     7261 cgctcgtccc agtcggccgc cacgtcaaaa gcccccgcgc ttcaggcgac ggcgcgaagc
     7321 tcgcgcagcg ccgagcgcag ctccgcggcg acagcgtcgg gctcaaggcg cgaggcgcgc
     7381 aaagagccgt ccgcgccggc gaacttcacg gccgaggcaa gctcgctagc gtcgaggcgc
     7441 cagcgggcgc cgtcgccgtc gccctccatc tcgttcaggc gcgcgaccag agcgctgaag
     7501 tcgcggcgcg cgaccgccgg cctgtcaacc gtcacggccc aggagtagta ggggtagtca
     7561 acgcggtagc tccagccgcc ttcggcgggc gtggcgatga ggaagacttc gccgcgggcg
     7621 tggtgcgcga ttgcggtgaa gggcgggacg tggcgcgtgg gccggaagcc ctcggggccg
     7681 aaaagctcgg gcgcgagcgt gacgaccgag aggcgcgcct ccgcgtcctc ctcgacgcgc
     7741 gaggcgccgc gcgcgaagct atcgagcgcc gcttcgacca gcgcccagcc ttcgcgccaa
     7801 agctcctcgt attcgcccgt gcgctcaatc acacgctcga cctcggggag cacgaggtcg
     7861 taggcgcgct tttcgtccac gggggcgccg ccgttcagcc gccgcgcgag cggcgaggcc
     7921 aggcccgcgc ccggcgccgg ggcgtccgcg ccctgtatga cgatgctcgc gcgcacggcg
     7981 tcggcgcccg tgaactcgga gaagtcgccg gcctcggcgg cggcgatgag cctctcgcgg
     8041 agcggcaggg cgcgcgcgcc cgcgagcacc gtccagacgg agagcacccc gtcggtgtcg
     8101 aagtggttgt tggtgacgac ctcgacgccg cgcgtaagcc ggtcgcgcag cggcgaggcg
     8161 acgaagttca gcgcgatgcc ggtcgaggtg tctgcgcgca actcctccgg tgtctcgttg
     8221 ccgctccagt gcgagaggtg gacggcgttg tcaaccgtcc cgtcaaccga cagcttcggc
     8281 acattcaaaa ggccgtcgtg gtaatactcg aaacgcattg gggaactcct ttcagaatcc
     8341 gcgcggtcac tcgttgatgc cttttaactt gatgtgcggg tcgaggcgcg tgacgacgag
     8401 gccctcgcgg gcgtcgaaac ggcacgcgag ggccgtcttg tcctgctcgc agccatcgcc
     8461 cggctcgcga taccagatgc ggcagttggc gcagtcgccg ttccagcaga agtcgccgta
     8521 ggagatcgtg tcaatcgaga ggtactggaa gcagcgcagc aggcggttct tctcaggcac
     8581 ctcgaccctg cggccgagaa cctcgatgcc aatcagtcgc tcgtaagggt ctagaaggtc
     8641 gctctcgaac acggcggccg gcgcctcttt cgtctgtgta gtgcgggcgg atcgcgtgtg
     8701 acggccgaga gtatagcgga ggggcgggcg cgcgggccag ccggggcagg cttctcaacg
     8761 gcggcaggcg tgcgctacac tagcgcgcaa aagaagtggg agggaaacag gtgtggggct
     8821 cgtaatatac atcaagccgg gctgccctta ctgccagcag gcccgcgacc actacaaggc
     8881 ggcgggcgta gagtggactg agcacgacgc gcagaacgac cgcgcgcgcc gcgccgagat
     8941 gttcgcctac tcgggcggcg acccgaccgt gccttgcatc gtagaggacg gccgctacgt
     9001 gcagtccggc tggggcgacc cgccgcgcgg ttgaacggtt cacgactagg ccggccgtga
     9061 gccggcgaga gaattccgga tttttgattt gcgatttctg acttaagctg tcggccgccg
     9121 gcggcttccg gtcgcgaatc aaaaactaaa atcgcaaatc aaaatttgtg gttggcagga
     9181 cgctcctcaa ctaccgcatc acggagaagc tcggcgcggg cgggcagggc acggtctata
     9241 aagcgacgga cgagcgcctc ggccgcaccg tcgtcatcaa ggtcttgtcg cctgagctga
     9301 cggcgcgcga agtcaacctc aagcgcttcg agcgcgaggc gcagctcgcc tcctccttag
     9361 accacccgaa catctgcacc atctacggcc tgcacgaggc cgacggcctc cacttcatcg
     9421 ccatgcagta catcgacggg cgcaacgtcc gcgaactcgt cgccggccac ccgctcgctg
     9481 tcaacagcgc gctctcgatc gcgtaccagg tggccgacgc cctgacggcc gcgcactcga
     9541 agggcgtcat ccaccgcgac atcaaggccg ggaacgtgat ggtgacggac gcggggctcg
     9601 cgaaggttct ggacttcggc ctcgccaagc tgctcgacga gaaccagcag gacaagaaga
     9661 agggctcgga catccacctg accgagttgg gcgtccccta cgggacggcg acctacgccg
     9721 cgcccgaaca ggcgacgggc cagagggttg accaccgcgc ggacatcttc tcgacgggcg
     9781 tgctgctcta cgagatgctc gccgggacgt ggcccttccg cgggcagacg agcatcgagg
     9841 tgcgctacgc cgtcctgcac gacacgccgc gccccatcaa cgaggcgcgc aacgaagaga
     9901 cctcgccgcg cctgcaagag atcgtcgacc gcgcgctcgc caagaacccg gacgagcgtt
     9961 accagaggat gtccgaaatg cgcgacgagc tgcgcgccgc gatgcgcgag gccgcggggc
    10021 tctccgcaga ccccggcata gacacgagcg gcatccccgg cgagctggtg ccggtcgcgc
    10081 cgcgccgccg cggccagggc ggcggcgggg tcggccgcac cttccgccgc tggtggcgca
    10141 gcctgacggg cggcgaggcc cagcccacct cgctcccgcc cgcgtcgcgc acgtccccgc
    10201 ccggctccgg cgcgcacgcg cccccctcgc cccacgtcag ccagttcgcc cccgagaagt
    10261 ccat
//
LOCUS       DASPKR010000673         2385 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_363511, whole genome shotgun sequence.
ACCESSION   DASPKR010000673 DASPKR010000000
VERSION     DASPKR010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2385)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363511"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1002
                     /gene="sufD"
                     /locus_tag="VD968_17865"
     CDS             <1..1002
                     /gene="sufD"
                     /locus_tag="VD968_17865"
                     /inference="COORDINATES: protein motif:HMM:TIGR01981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HYE16310.1"
                     /translation="VPAGAFVTELSAAASGEHAGLVREHLSRLAGRDGNAFESFNTAF
                     AAAGALLYLPEGVSVESPVQLLFITSQPDEATATFPRVLVVAGRESRLDLIESYAASG
                     EGTYFTDAVVEVSVGEGARVTHYKVQDEGLGGFHVASTRAEVGRSAAYELMTVTLGAR
                     LSRHDVEVRFTDEGGECRVDGLYLVGDGQHADTHSLIDHRVPRCTSGQNYKGILDGRS
                     RAVFNGRVFVHEGAQQTDAQQSNKNLLLSPEARVDTKPQLEIFADDVKCAHGATVGQL
                     EEDELFYLLSRGLHPDLARNLLTYGFAEEIVEKIKYDSIRARLDEAILNRLHARLEV"
     gene            1015..2271
                     /locus_tag="VD968_17870"
     CDS             1015..2271
                     /locus_tag="VD968_17870"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020359689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HYE16311.1"
                     /translation="MIATEEKKETAAAAWDVGRVREDFPVLGQTVNGKPLVYLDNAAS
                     AQVPRIVIERGAKYLREEHSNIHRGVHYLSQRATSAYEGAREKVRRFINAREARECIF
                     VRGVTEGVNLVMHGYGRKFVGEGDEIIVSEMEHHSNLVPWQMLCEEKGARLRVIPMND
                     AGELLLDEYDALLSDRTRLVCVGHVSNALGTINPIKEITARAHRAGAPVLVDGAQGAP
                     HLRVDVQDLGCDFYAVSGHKMFAPTGSGVLYGRAEWLEKMNPFLGGGSMIRTVTFERS
                     TYAAIPDKFEAGTPAIASAIGLGAAIDYLDGLDREAAHAHEQGLLAYATERLSSIEGV
                     RVIGTAREKASVLAFVIDEIHPHDVGTILDREGIAIRAGHHCAQPVMQHFKVPATARA
                     SFAFYNTREEVDSLAAAVRKVIEVFS"
BASE COUNT          412 a          812 c          782 g          379 t
ORIGIN      
        1 gtccccgctg gcgccttcgt cacggagctc tccgcggccg cctcgggcga gcacgcggga
       61 ttggtgcgcg agcacctctc gcggctagcc ggccgagacg gcaacgcctt cgagtcgttc
      121 aacacggcct tcgccgccgc cggcgcgctg ctctacctgc ccgaaggcgt gagcgtcgag
      181 tcgccggttc aactgctctt catcacttcg cagccggatg aagccacggc gactttcccc
      241 cgcgtgctcg tcgtcgcggg ccgcgagagc cggctcgact taatcgagtc ttatgcggcc
      301 tcgggcgaag ggacgtattt caccgatgcc gttgtcgagg tctccgtggg cgagggcgct
      361 cgcgtcacgc actacaaggt tcaggacgag gggctgggcg gcttccacgt cgcctcgacg
      421 cgggcggagg tcggccgctc ggccgcctac gagttgatga cggtcacgct gggcgcgcgt
      481 ctctcaaggc acgacgttga ggtgaggttc accgacgagg gcggcgagtg ccgcgtggac
      541 gggctctacc tcgtcggcga cgggcagcac gccgacacgc actcgctcat agaccaccgc
      601 gtgccgcgct gcacgagcgg gcagaactac aagggcatcc tcgacggccg ctcgcgcgcc
      661 gtcttcaacg gccgcgtttt cgtccacgag ggcgcgcagc agaccgacgc gcagcagagc
      721 aacaagaacc tcctgctctc gccggaggcg cgcgttgaca ccaagccgca gctcgagatt
      781 ttcgccgacg acgtgaagtg cgcgcacggc gccaccgtgg gccagctcga agaggatgag
      841 cttttctatc tgctcagccg cggcctgcac cccgacctgg cgcgcaacct cctgacctac
      901 ggcttcgccg aggagatcgt agaaaagatc aagtacgact cgatacgcgc ccgcctcgac
      961 gaggcgattt tgaaccggct gcacgcgcgg ctggaagtct gagagttgag agagatgatc
     1021 gcaacggaag agaagaagga gactgccgcc gcggcctggg acgtcgggcg cgtgcgcgaa
     1081 gacttccccg tgctcgggca gaccgtcaac ggcaagccgc tcgtctatct ggacaacgcg
     1141 gcgtcggcgc aggtgccgcg catcgtcatt gagcgtgggg cgaagtacct gcgcgaggag
     1201 cactcgaaca tacaccgcgg cgtccactac ctgagccagc gcgccacctc ggcctacgag
     1261 ggcgcgcgcg agaaggtgcg ccgcttcatc aacgcccgcg aggcgcgaga gtgcatcttc
     1321 gtgcgcggcg tcaccgaggg cgtcaacctc gtcatgcacg gctacgggcg caagttcgtc
     1381 ggcgagggcg acgagataat cgtctccgag atggagcacc actcgaacct cgtgccgtgg
     1441 cagatgctct gcgaggagaa gggcgcgcgc ctgcgcgtca tccctatgaa cgacgcgggc
     1501 gagctgctct tagacgagta cgacgcgctc ctcagtgacc gcacacggct ggtctgcgtc
     1561 ggccacgtct cgaacgctct cggcaccatc aaccccatca aggagatcac ggcgcgcgcg
     1621 cacagggcgg gcgcgcccgt gctcgttgac ggcgcgcagg gtgcgccgca cctccgggtg
     1681 gacgtgcagg acttgggctg cgacttctac gccgtctccg gccacaagat gttcgcgccg
     1741 acgggcagcg gcgtgctcta cggcagggcc gagtggcttg agaagatgaa cccattcctc
     1801 ggcggcggct cgatgatccg caccgtcacg ttcgagcgca gcacctacgc ggctatcccc
     1861 gacaagttcg aggccggcac tcccgccata gcctcggcca tcggcctcgg cgcggcgatt
     1921 gattacctcg acggcctcga ccgcgaagcc gcgcacgcgc acgagcaggg cttgctcgct
     1981 tacgcgaccg agcggctctc ctccatcgag ggcgtccgcg tcatcggcac cgcgcgcgag
     2041 aaggcgagcg tcctcgcctt cgtcatagac gaaatccacc cgcacgacgt cggcaccatc
     2101 ctcgaccgcg agggcatagc catacgcgcc ggccaccact gcgcgcagcc cgtcatgcag
     2161 cacttcaaag tgccggcgac ggcgcgcgcc tccttcgcct tctacaacac ccgcgaggag
     2221 gttgacagcc tcgccgcggc cgtccgcaag gtcatagagg tcttttcata gcggtcggtg
     2281 gtcagcggtc agctttcagc agaaacggga agctgccggc tgaattctga ttgctgattg
     2341 ctttcttatg tcggaactga gtgagcttta ccagcaggtc atact
//
LOCUS       DASPKR010000674         4708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1268257, whole genome shotgun sequence.
ACCESSION   DASPKR010000674 DASPKR010000000
VERSION     DASPKR010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4708)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4708
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1268257"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1467)
                     /locus_tag="VD968_17875"
     CDS             complement(<1..1467)
                     /locus_tag="VD968_17875"
                     /inference="COORDINATES: protein motif:HMM:NF014269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HYE16312.1"
                     /translation="MEEYSDHTPADIARLPMVPIRDVVIFPFTKVAFKIGRPGSVRAL
                     EDALATDRTIFLATQHDASIDEPLPNQIYGVGTIARVLQAQRQENGQTKVVVEGRERA
                     TTIRVENDRGAFTAVVRRAPSAPESGPRIDALIQRIGQLVEQHIRLAPEMQTDALQTA
                     LRNTDPSHLADALASQLKISVEDKQGLLEIFSTFGRLQRLAELLEVEVEKRQLDRTIQ
                     ARVKRQMEKAQKEYYLNEQIKAIHKELGRKDEKAEIEDLRKRIEEAGMSEEAKEKAMQ
                     ELHRLEAMPPMSAEGTVSRTYIDWLLSVPWKQKSKEIRDITKAEEVLNDDHYGLEKIK
                     DRILEHLAVRQLVKSPKGSILCFVGPPGVGKTSLGKSIARATGRKFVRLSLGGVRDEA
                     EVRGHRRTYIGALPGQIIQMMKKAGTVNPLILLDEVDKLGADFRGDPSAALLEVLDPE
                     QNNTFQDHYLDVEYDLSKVFFIATANVLHTIPPPLQDRL"
     gene            complement(1701..4052)
                     /locus_tag="VD968_17880"
     CDS             complement(1701..4052)
                     /locus_tag="VD968_17880"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16313.1"
                     /translation="MLAALALAALGAPRGQAASGDLDPSFGTAGKVITVISNGDDELN
                     AVAVQPDGKIIVAGTATTGVTQTDFTLARYNPNGTLDTAFGGDGIVTTDFFNSFDYAR
                     ALAIQPDGKIVVAGYADLPSSECCFSYDFALARYNSDGTLDTTFDGDGKLTTDFFGDQ
                     DYAVALAIQPDDGKIVAAGSAREIVGFNTASRSYFALARYNPDGSLDSSFNLDGKATV
                     SNSFPFGVGGYLTCVAIQPDDGKIVAGGQVLQFDVHDVMPERWTDFALLRFNPDGSPD
                     PGFGTFGQVTTDFSNSSDNAYDLALQSDGKVVMAGSSYNGGRAKFALVRYNPDGSLDS
                     SFGAGGKVATDFGVPGVAVGIAIIQLDGVEKIVVSGSEILARYNVDGTLDTDFNGDGS
                     VIPAFAARHLAIQPDGRMVTAGLVRQTGTRDDFALARYLDGAAAADLSITKAASKNPA
                     AVNQIFNYSITVSNEGPDAATQVVVTDTLPAGPSFVSAEASQGACLFSSGTVTCQLGT
                     LAGGATASVIIKIKPRAEGTLTNTATVSAAEPDPDTSDNSSTVVTAVVKYADLSLKMT
                     DSKDPVVLGEQFSYTLTVTNAGPAAAGGVTLTDTLPAAMTFVSASASQGGITSSPPAG
                     SSGTVTAALGTLGSGATATVQITVTATQAGAFTNTASVSAIESDPNAANNTAKQATTV
                     VTLSKLLLSASTVVGGCQPYPTGVVYLTGPAPAGGATVSLSSTNAGAAPPPSVTVPAG
                     ATQSAPFTVTTSQVSSTQSGSIKATLGAKTVGRSLSVTNGSCQ"
     gene            4202..4324
                     /locus_tag="VD968_17885"
     CDS             4202..4324
                     /locus_tag="VD968_17885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16314.1"
                     /translation="MSTGRAAGTAVPAWWMRRKPFCGGHTLSGEVEADLRLAHK"
     gene            complement(4519..>4708)
                     /locus_tag="VD968_17890"
     CDS             complement(4519..>4708)
                     /locus_tag="VD968_17890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HYE16315.1"
                     /translation="GNDAHWRALPERFPPHQTCRRRFRQWLIDGTLRAVLEALEQDLR
                     ERGGFGRCRMYARRRARV"
BASE COUNT          771 a         1496 c         1569 g          872 t
ORIGIN      
        1 gagcctgtcc tggagcggcg gcggtatcgt gtgcagaacg ttcgccgtcg cgatgaagaa
       61 gactttggag aggtcgtact cgacatccag gtagtgatcc tggaacgtgt tgttctgctc
      121 ggggtcgagt acttcgagca gggcggccga cgggtcgccg cggaagtcag cgccgagctt
      181 gtcaacctcg tcgagcagga tgagggggtt gacggtgccg gccttcttca tcatctggat
      241 tatctggccg ggtagcgcgc cgatgtaggt gcggcggtgg ccgcgaacct cggcctcgtc
      301 gcgcacgccc cccaaagaga ggcgcacgaa cttgcggccc gtggcgcgcg cgattgactt
      361 gcccaggcta gtcttgccga cgcccggcgg gccgacgaag cagagtatcg agcccttcgg
      421 gctcttcacc agctgccgga cggccagatg ctccagtatg cggtctttta tcttttcgag
      481 cccgtagtga tcatcgttca agacctcctc ggccttcgtg atgtcgcgaa tctccttcga
      541 cttctgcttc cacggcacgc tgagcagcca gtcaatgtac gtgcgcgaga ccgtgccttc
      601 ggccgacatc ggcggcatgg cttcgaggcg gtgaagctcc tgcatggcct tctccttcgc
      661 ctcctcgctc atgccggcct cttcgatgcg cttgcgaagg tcttctatct cggccttctc
      721 gtccttgcgg cccagctcct tgtgtatggc ctttatctgc tcgttgaggt agtactcctt
      781 ctgcgccttc tccatctgcc gcttgacgcg cgcctgaatt gtgcggtcaa gctgcctctt
      841 ctcgacctcg acttcgagca gctcggccag gcgctgcaaa cgcccgaacg tggagaagat
      901 ttcgagcagg ccctgcttgt cctcgaccga gattttgagc tgcgaggcga gcgcgtccgc
      961 taggtgcgac gggtctgtgt tgcgcagggc ggtctgcaag gcgtcggtct gcatctcggg
     1021 ggcgaggcgt atgtgctgct cgacgagctg gcctatgcgc tgaatgagtg cgtctatgcg
     1081 cgggccggac tcgggcgcgg agggcgcgcg gcgcacgacg gccgtgaagg ccccgcggtc
     1141 gttctcgacc cgtatggtcg tggcgcgctc gcgcccctcg acgaccacct tcgtctgccc
     1201 gttctcctgc cgctgcgcct gtagaacgcg cgcgatggtg ccgacgccgt aaatctggtt
     1261 cgggagcggc tcgtcaatcg aggcgtcgtg ctgcgttgcg aggaagatgg ttcggtcggt
     1321 ggcgagagcg tcctctagcg cgcgaacgga gccgggccgc cctatcttga aggcgacctt
     1381 agtgaaaggg aatatgacga cgtcgcgtat cggcaccatc ggcagacgcg cgatgtcggc
     1441 gggcgtgtgg tcggagtatt cttccatagt cgaaaattgc cgaagcctat gactgctaat
     1501 ggcgcgaagg gcgagactgt ccaatcccgt ctcgccccgc cctcaaggtg aacagaattt
     1561 taacccattt cgcgcgcgcg cgccacagca cggctaaaaa gccgccgcca cgcggtgccg
     1621 ccccgctcag ccgggcagcc cgaccgcgcc cctctcctcc tcctgattgt tctcgtgcgc
     1681 cgccccggaa ttatgaaggc tcattggcag gagccgtttg ttacgctcag agaacggccc
     1741 accgtctttg cgccgagcgt cgcctttatg gagccggatt gcgtggatga gacctgagaa
     1801 gtcgtcacgg tgaacggcgc gctctgcgtc gcgcccgccg gcaccgtgac gctcgggggc
     1861 ggcgccgcgc ccgcgttcgt gctcgacaga gagaccgtcg caccgcccgc cggcgcgggc
     1921 cctgtcaggt aaacgacgcc cgtcgggtat ggctggcacc cgcccactac ggtcgaggcc
     1981 gagagcagca gcttcgacaa ggtgacgacc gtagtcgcct gcttcgccgt gttgttcgcc
     2041 gcgttcgggt cgctctctat ggctgagacc gacgccgtgt tggtgaacgc gcctgcctgc
     2101 gtggccgtga cggttatctg cacggtggcc gtcgcccccg agcccagagt gccaagggca
     2161 gccgtcaccg tcccggaaga gcctgcgggc ggcgacgaag tgatgccgcc ctgcgaggcc
     2221 gaggccgaga cgaaggtcat cgcggccggc agcgtgtccg tcagcgtcac accgcccgcc
     2281 gcggcggggc cggcgttcgt caccgtcagc gtgtaggaga actgctcgcc gaggactacg
     2341 gggtctttcg agtccgtcat cttcaacgaa aggtctgcgt acttgacgac cgcggtcacg
     2401 accgtagagc tgttgtcgga agtgtcgggg tcgggttccg cggccgacac cgtggccgtg
     2461 ttcgtgagcg tgccttcggc gcgcggcttt atcttgataa tcacgctggc ggtcgcgccg
     2521 ccggccagcg tgccgagttg acaggtgact gtgccggagg agaagaggca ggcgccctgc
     2581 gacgcctcgg ccgagacgaa gctcgggcct gcgggcagcg tgtctgtgac gacgacttga
     2641 gtggccgcgt cggggccttc gttcgagacc gtgatggagt agttgaaaat ctggttgacg
     2701 gccgctgggt tcttcgacgc cgccttggtg attgacaggt cggccgccgc cgccccgtcg
     2761 aggtagcgcg ccagcgcgaa gtcatccctc gtgccggttt gccgaactaa tccggctgtg
     2821 accatcctgc cgtcgggctg gatggctagg tgtcgcgcgg caaaggcggg gatgacgctg
     2881 ccgtccccgt taaaatcggt gtccagggtg ccgtcaacgt tgtagcgcgc cagaatctca
     2941 ctgccggaca caacgatctt ctcgacgccg tccagttgaa tgatggcgat ccctactgcc
     3001 acgccaggga cgccgaagtc ggtggcgacc ttgccgcccg cgccgaacga agagtcgagc
     3061 gagccgtccg ggttgtaacg cacaagcgcg aacttagcgc gaccgccgtt atagctactc
     3121 ccggccatca cgaccttgcc gtctgactgg agcgccaggt catacgcatt gtcagaggag
     3181 ttggaaaaat ctgtggtgac ttggccgaat gtgccgaaac cggggtcggg gctgccgtcg
     3241 gggttgaagc gcagcaaagc gaaatcagtc catcgctcag gcatgacgtc atgaacgtcg
     3301 aattgcaaga cctgcccgcc cgccacgatc ttcccgtcgt ccggctggat ggcgacgcaa
     3361 gtcaggtacc cgccgacgcc gaaggggaag ctgttactga ctgtggcctt accgtcaagg
     3421 ttgaaggaag agtcgagcga gccgtccggg ttgtagcgcg ccagcgcgaa gtatgaacgg
     3481 ctggcggtat taaacccgac tatttctctg gcagacccgg ccgccacgat cttgccgtcg
     3541 tccggctgaa tggctaaggc gaccgcgtag tcctggtcac cgaagaaatc ggtcgtcagc
     3601 ttaccgtcac cgtcgaaggt agtatcgagg gtgccgtcgc tgttatagcg cgccaaggcg
     3661 aagtcatagc tgaaacaaca ctctgacgaa ggcaagtcgg catacccggc caccacgatt
     3721 ttcccgtccg gctggatggc taaggcgcgc gcgtagtcga agctattaaa aaaatcggtg
     3781 gtcactatcc cgtcgccgcc gaaggcggtg tcgagcgtgc cgttggggtt gtaccgcgcc
     3841 agcgtgaaat cggtttgggt cacgccggtg gtggcagtcc ccgcaacgat gatcttgccg
     3901 tccggctgca cggccaccgc attcagctca tcgtcgccgt tagaaataac cgtgatgact
     3961 ttgccggcag tgccgaagga ggggtcgagg tcgcccgaag ccgcctgacc ccgcggagcg
     4021 ccgagcgccg ccagcgctag cgccgcgagc aagacgatta agaagagcct cgaccgtccg
     4081 cgggctgatc gccgagccac ggcccgacta ctgattgacg gcctgcgcac cgatttcgac
     4141 ctgtacatga tgcatctcct tttctagggg gcgttcgccc cgagaagtgc gaggtgagtc
     4201 aatgtccacc ggcagggccg cggggacggc agtgccggcc tggtggatga ggcgcaagcc
     4261 cttctgcggc ggccacacct tatcgggcga ggttgaggcc gacttgaggt tggctcataa
     4321 atagaccccg ggcgaaaaac tcggcgcggc cggcgtcaaa aatggctgcc gccgaccgcc
     4381 ggccagagcc tccgggccaa cggcgactcg gtgcggcgca gcagcctccg cgtcgcggga
     4441 gagagcagga gcgccgccgt ctgccgccgc caggaggccg gccccggcgt ctcgcccgcg
     4501 cgcctctctt cgccgccctc acacccgagc gcgtcgtcgc gcgtacattc ggcaacgtcc
     4561 aaaccccccg cgctcgcgca ggtcctgttc gagcgcttca agcacggcgc ggagcgtgcc
     4621 gtcaatcaac cactgtcgga accggcggcg gcaggtctgg tgcggcggga agcgttcggg
     4681 cagcgcgcgc cagtgcgcgt cgttgccg
//
LOCUS       DASPKR010000675         2138 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_626097, whole genome shotgun sequence.
ACCESSION   DASPKR010000675 DASPKR010000000
VERSION     DASPKR010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2138)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2138
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_626097"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..222
                     /locus_tag="VD968_17895"
     CDS             <1..222
                     /locus_tag="VD968_17895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16316.1"
                     /translation="EGGVDRLNNAFSNLQSASHKLAESLYQGSGSAGGGEQASAAGAS
                     GSAGGGSTTSGGGDDNVIDAEYVDVDENK"
     gene            338..1531
                     /gene="dnaJ"
                     /locus_tag="VD968_17900"
     CDS             338..1531
                     /gene="dnaJ"
                     /locus_tag="VD968_17900"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HYE16317.1"
                     /translation="MAKEDYYQVLGVKRDAKPEEIKKAYRRLARKYHPDVNPGDKAAE
                     ERFKKITEAHDVLSDPKKRPVYDRFGQYSETLADAAARGAGGPGGAGAGRGVPFDFAG
                     FDWGGVGGGASSSSSSSSSGGGSSFRDIFADLFGGGAKQEREPPRPMPQKGADIEMPL
                     ALSFEEAVQGLTTNITVNRSEQCSRCNGAGDAGGALVVCPTCHGSGQVQRSGGRLRFA
                     QECPDCGGAGKRRPPCALCNGKGTVPKTEQVKVRIPAGVDTGSRVRIPGKGEGGRLGA
                     PPGDLFIITNVGKHKHFTRKGDNIYVKVPVTIAEAALGAKIEVPTIEGKAQLKIPPGT
                     QSGAQFRMRERGIPSLRNPQARGDQFVEVQITLPRVISEETKELLRRYAQLNPENPRV
                     AMGLE"
     gene            1614..2021
                     /locus_tag="VD968_17905"
     CDS             1614..2021
                     /locus_tag="VD968_17905"
                     /inference="COORDINATES: protein motif:HMM:NF024979.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYE16318.1"
                     /translation="MKRRKGGTYTISAVAAQYEIHPQTLRLYEREGLLKPSRSEGNTR
                     LYTDSDLERLEVILSLTRDLGVNLAGVEIILNMREKMDAMQREFERFFSYLQTHAEDF
                     AHLTESAPPPPEAGALVPASRAAVLRRRAGQRG"
BASE COUNT          384 a          697 c          734 g          323 t
ORIGIN      
        1 gagggcggcg ttgaccgact caacaacgcc ttctcgaacc tccagagcgc gtcgcacaag
       61 ctggccgagt cgctctacca gggctcgggc tcggcgggcg gcggcgagca ggcttcggcc
      121 gcgggcgctt ccggctcggc cggaggcggc tcaacgacct cgggcggcgg cgacgacaac
      181 gtcattgacg ccgagtacgt ggacgttgat gagaacaaat aagctgtcgg caatcagctt
      241 tcagcggtcg gcgggcaggc gtgttaagaa tggtcaacag acttcgcgcc tgcttgcttt
      301 agctgattgc cgattgctga ttgctgattg ttgctaaatg gctaaggaag actactacca
      361 agttctgggc gtaaagcgcg acgcgaagcc ggaggagatt aagaaggctt accggcgcct
      421 ggcgcgcaag taccacccgg acgtgaaccc cggcgacaag gcggccgagg agcgcttcaa
      481 gaagataacg gaggcgcacg acgtgctctc cgacccgaag aagcgccccg tctatgaccg
      541 cttcgggcag tactccgaga cgctcgccga cgccgccgcg cgcggcgcag gggggccggg
      601 cggggcgggc gccggccgcg gcgtcccctt cgacttcgca ggcttcgact ggggaggcgt
      661 cggcggcggc gcgtcttcgt cctcctcttc ctcctcttcg ggcggcggct cctccttccg
      721 cgacatcttc gcagacctct tcggcggcgg cgcgaagcag gagcgcgagc ccccgcgccc
      781 gatgccccag aagggcgcag acatcgagat gccgctcgcg ctctcgttcg aagaggccgt
      841 gcaggggctg actacaaaca tcacggtcaa ccgctccgag cagtgctcgc gctgcaacgg
      901 cgcgggcgac gccggtggcg ctctggtcgt ctgcccgacc tgtcacggct cgggccaggt
      961 gcagcgctcg ggcgggcgtc tgcggttcgc gcaggagtgt ccggactgcg gcggggcggg
     1021 caagcgccgc ccgccgtgcg cgctgtgcaa cggcaagggg actgtcccca agaccgagca
     1081 ggtgaaggtt cgaataccgg cgggcgtgga caccggctcg cgcgtgcgca tccccggcaa
     1141 gggcgagggc ggaaggctgg gggcgccgcc gggcgacctc ttcatcatca cgaacgtcgg
     1201 caagcacaag cacttcacgc gcaagggcga caacatctac gtcaaggtgc ctgtgacgat
     1261 tgcagaggcc gcgctcggcg cgaagatcga ggtgccgacc atcgagggca aggcgcagtt
     1321 gaaaatcccg cccggcacgc agtcgggcgc gcagttccgc atgcgcgagc ggggcatccc
     1381 ctctttgagg aacccgcagg cgcgcggcga ccagttcgtc gaagtgcaga taactttgcc
     1441 gagagtcatc tcggaagaga cgaaggagct gctccgccgc tacgcgcagc tcaaccccga
     1501 gaacccgcgc gtagcgatgg ggctcgaata gaggctaggg gtttagaggc tgtaggccgg
     1561 ttaagaactg gccgcccgac tagcctctaa tctctggcga ccagtctccg actatgaaac
     1621 gcaggaaggg cggaacgtac acgataagcg cggtggcggc gcagtacgag attcacccgc
     1681 agaccttgag gctctacgag cgcgaggggc tccttaagcc ctcgcgctcc gaggggaaca
     1741 cgcgcctcta caccgactcc gacctcgaaa ggctcgaagt catcctgtcg ctcacgcgcg
     1801 acctgggcgt gaacctcgcg ggcgtcgaga taatcctgaa catgcgcgag aagatggacg
     1861 ccatgcagcg cgagttcgag cgcttcttct cctacctcca gacgcacgcc gaggacttcg
     1921 cgcacctgac cgagtcggcc ccgccgccgc ccgaggccgg cgcgctcgtc cccgcttcgc
     1981 gggcggcagt gctgcgtcgc cgcgcgggcc agcgcggcta aaaactcgcg cgcgaaaaaa
     2041 agaagaggcg cacgcgtgag ttgtgcgcct cttctttttt gccacgaccg ccgaggggga
     2101 ctttgcgaga gctcgctcgg gcctcttcgc gtcgtcgc
//
LOCUS       DASPKR010000676         3378 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1782779, whole genome shotgun sequence.
ACCESSION   DASPKR010000676 DASPKR010000000
VERSION     DASPKR010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3378)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3378
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1782779"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1720)
                     /locus_tag="VD968_17910"
     CDS             complement(<1..1720)
                     /locus_tag="VD968_17910"
                     /inference="COORDINATES: protein motif:HMM:TIGR02608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="delta-60 repeat domain-containing protein"
                     /protein_id="HYE16319.1"
                     /translation="MSARKTSGVGLSRDDGRGTTWVARRAPSILLAALAALVIFAALA
                     APHGAQSAEGDLDATFGGGDGRVNDNFGEPYGNKANAVVVQPDGKIVLAAQASFGQER
                     GYDFALARYNPDGSLDPTFGIGGKVVTNINLGGDIPHALALQPDGKIIAVGESISDQA
                     GITTTEYTLVRYNPDGSLDPSFGGDGIVVTDLFGNGDTAFAVALQPDGKIVAAGSSAQ
                     NGTGANFSAARYNPDGSLDTTFGSPVPGTASRSGRVMTDLVAWNDIGRAVALQADGRI
                     VIAGHTQTPSTNNYDFALLRYEADGDLDTTFGGDGWVTTRFFEDDFVDDERAFAVRAQ
                     PDGKIVAAGFAWDRNETQPASQWEDFALARYNADGSLDPTFGAGGLVWTNISIQPGGA
                     DKFNEVTKDRAHALLLQPDGRLVAGGFASCCNSGGTEDFALTRYNPDGSLDPSFGGDG
                     IVRTDFLGIFTDDEIYGMALQPDGKIVAVGRAETNDRLGTYDYAVARYNATSGASATP
                     TPTPLTTPTPAATPTPGGGSAGGLQYYPLPSPVRLFDTRPGQPACSNKGSAMAAGSTY
                     AVAARVA"
     gene            complement(1983..3347)
                     /locus_tag="VD968_17915"
     CDS             complement(1983..3347)
                     /locus_tag="VD968_17915"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HYE16320.1"
                     /translation="MPRVLIADDQPAVVEALRLLLKPEGYEIKAVASPSDVLEALSRQ
                     TFDAALIDLNYTRDTTSGQEGFDLLARVRELDATLPVVVMTAWGSVEVAVEAMRRGAG
                     DFVQKPWDNARLLSILRTQVELARAVRKGARLEAENQMLRTDGGGAGAPLLIAESAVM
                     QPVLELVRHIGPSDANVLITGENGTGKEVIARTLHALSPRASKPMVAVNAGALAEGTF
                     ESELFGHVRGAYTDAKTDRVGRFELADGGTLFLDEIANVPLNLQPKLLRVLETGEFER
                     VGSSQTRRTDVRVLSATNADLKEEVEAGRFRRDLLFRINTVEIHLPPLRERAEDVPAL
                     AHYFLRFYSQRYRKSLRGFDSEAAGLLRSYQWPGNVRELDHVVQRSVLMARSDEVRAA
                     DLGLQPSRETGERRLDEMSLEEVERLLIQKALKRFGGNVSHAAEALGLSRSALYRRMQ
                     KYEL"
BASE COUNT          481 a         1085 c         1250 g          562 t
ORIGIN      
        1 acgccacgcg cgccgccacg gcgtaagtcg agccggcggc catcgccgag cccttgttcg
       61 agcaggccgg ctgccccggc ctcgtgtcga acaggcggac ggggctaggc agcgggtagt
      121 attgcagacc gcccgcggag ccgccgcccg gcgtcggcgt tgccgccggg gtgggggtcg
      181 tcaagggggt cggcgtcggc gtggcggagg cgccggaggt ggcgttgtag cgcgcgacgg
      241 cgtaatcata cgtgcccagg cggtcgttcg tctcggcgcg gccgacggcc acgatcttcc
      301 cgtcaggctg aagcgccatc ccgtatatct cgtcgtcggt gaagatgccg aggaagtccg
      361 tgcggacgat gccgtctccg ccgaagctcg ggtcgaggct cccgtccggg ttgtagcgcg
      421 tgagcgcgaa gtcctccgtc ccgccgctgt tgcaacaact ggcgaagccg cccgcgacca
      481 aacggccgtc gggctggagc aggagcgcgt gcgccctgtc tttggtcacc tcgttgaact
      541 tgtcggcgcc gcccggctgt atggagatgt tcgtccagac caggccgccc gcgccgaagg
      601 tcgggtcgag cgagccgtcc gcgttgtagc gggccagcgc gaagtcctcc cactggctgg
      661 cgggctgggt ttcgttccta tcccaggcga agccggcggc gactatcttg ccgtccggct
      721 gggcgcgcac ggcgaaggcg cgctcgtcgt ccacgaagtc gtcctcgaag aaacgcgtcg
      781 tcacccaccc gtcgccgccg aaggtcgtgt ccaggtcgcc gtccgcctcg taacgcagga
      841 gggcgaagtc gtagttgttg gtcgaaggcg tctgcgtgtg gccggcgatg acgatgcggc
      901 cgtcggcctg aagcgcgacg gcgcggccga tgtcgttcca ggcgacgagg tcagtcatca
      961 cccggccgga gcgcgaggcc gtgccgggga cgggggagcc gaaggtggtg tcgagagagc
     1021 cgtcggggtt gtagcgggcg gcggagaagt tcgcccccgt gccgttctgg gcgctgctac
     1081 ccgccgcgac gatcttcccg tcgggctgga gcgcgacggc gaaggccgtg tcgccgttgc
     1141 cgaagaggtc tgtgactacg atgccgtcgc cgccgaagct cgggtcgagc gagccgtcag
     1201 ggttgtagcg caccagcgtg tactcggtcg tcgtgatgcc ggcctggtcg ctgatggact
     1261 cgccgacggc gatgatcttg ccgtcgggct ggagcgcgag cgcgtgaggg atgtcgccgc
     1321 ccaagttgat gttggtgaca actttgccgc ctatcccgaa tgtcgggtcg agcgacccgt
     1381 ccgggttgta gcgcgcgagg gcgaagtcgt agccgcgctc ctgaccgaag gacgcctgcg
     1441 ctgcgaggac gattttgccg tccggctgga cgacgacggc gttcgccttg ttgccgtagg
     1501 gctccccgaa attgtcgttg acgcggccgt cgccgccgcc gaaggtcgcg tcgaggtcgc
     1561 cctcggcgga ctgcgcgccg tgcggcgcgg cgagcgctgc gaagatgacg agggcggcga
     1621 gcgcggcgag gagaatgctc ggggcgcggc gcgccaccca tgtcgttccc cgcccgtcgt
     1681 cacgcgagag cccaacgcca gaagtcttgc gggcagacat gccttcccct ccccttgctc
     1741 gcgcgcccgc gctggaagac gcgtcaaatg tgctcgtgtt ttttttccag ggagattcgc
     1801 cgcaaggggg cgcggcgccg tcttaatttc gccgcccggt gcgggatgag ggggcgcggg
     1861 gcttgggggg ccttgcgtgg caagttcccg accttaaacg tatgtcagcg gcgtgtgaaa
     1921 gattaaacaa aaacagaggc gagcgtcaac tattattcgg cgtcgcgggg gcgccccggc
     1981 cctcacagct cgtacttctg catgcggcgg tagagggcgc tgcggctgag gccgagcgcc
     2041 tcggccgcgt ggctgacgtt gccgccgaag cgcttgagcg ccttctgtat cagcaggcgc
     2101 tcgacctctt cgaggctcat ctcgtcgagg cggcgctcgc ccgtctcgcg cgagggctgg
     2161 aggccgaggt ctgcggctct gacttcgtcc gagcgcgcca tgagcacgga gcgctgcacg
     2221 acgtggtcta gctcgcggac gttgcccggc cactggtacg agcgaaggag ccccgcggcc
     2281 tccgagtcga agccgcgcag gctcttgcgg tatcgctgcg agtagaaccg aaggaagtag
     2341 tgggctaacg ccggcacgtc ctctgcgcgc tcgcgcaggg gggggaggtg tatctcgacg
     2401 gtgttgatgc ggaagaggag gtcgcggcgg aagcggccgg cctcgacctc ttccttgagg
     2461 tcggcgttcg tcgccgagag gacgcgcacg tcggtgcggc gcgtctgcga agagccgacg
     2521 cgctcgaact ctccggtctc cagcacgcgc agaagtttcg gctggaggtt gagggggacg
     2581 ttggctatct cgtcgaggaa gagcgtgccg ccgtccgcga gctcgaagcg tccgacgcgg
     2641 tcggtcttgg cgtcggtgta ggcgccgcgg acgtggccga acagctcgct ctcgaaggtg
     2701 ccttccgcga gcgcaccggc gttgacggcc accatcggct tcgacgcgcg gggcgagagc
     2761 gcgtgcagcg tgcgcgctat gacctccttg cccgtgccgt tctcgccggt gatgaggacg
     2821 ttggcgtcgg acgggcctat gtggcgcaca agctcgagga cgggctgcat gacggccgac
     2881 tcggcgatga ggagcggggc gccagcgccg cccccgtcgg tgcgcagcat ctggttctcg
     2941 gcctcgagcc tcgcgccctt gcggacggcg cgcgccaact cgacctgcgt gcgcagtatc
     3001 gagagcagcc gcgcgttgtc ccacggcttc tgcacgaagt cgcccgcgcc gcgccgcatc
     3061 gcctcgaccg ccacctcgac gctgccccac gcggtcatca cgacgacggg gagagtggcg
     3121 tcgagctcgc ggacgcgcgc cagcaggtcg aagccctcct gccccgaggt cgtgtcgcgc
     3181 gtgtagttga ggtctatgag ggccgcgtcg aaggtctggc gagagagagc ttcgagcacg
     3241 tccgagggcg acgcgacggc ctttatctcg tagccctcgg gcttcaagag cagccgcagc
     3301 gcctctacca cggctggctg gtcgtcggcg atgagaactc tcggcataag tgatcagcca
     3361 aatcagtggt aacgctta
//
LOCUS       DASPKR010000677         9764 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_745488, whole genome shotgun sequence.
ACCESSION   DASPKR010000677 DASPKR010000000
VERSION     DASPKR010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9764)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9764
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_745488"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..420
                     /locus_tag="VD968_17920"
     CDS             <1..420
                     /locus_tag="VD968_17920"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE16321.1"
                     /translation="TMANDLQGAPPDGRTPLVLVADDDDDTRTLFSIMLGMRGCAVIE
                     AADGEEAVRLAESAGPDLIIMDGSLPRLDGFAAARRIRKMRSVPIVFVSGHAEPSFLA
                     LAREAGCDEYLVKPPSLDHLGRVLQQYLGVGERAFAA"
     gene            442..810
                     /locus_tag="VD968_17925"
     CDS             442..810
                     /locus_tag="VD968_17925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16322.1"
                     /translation="MRVISPTERNLLGLFELDDAGTVLYSRVEPAGKGGARRDLSGLN
                     FYEEVAPFSNVEEFRRRVTLFARGGGPVNRFNFDCLYDTGSLHVKVLLARVSERADRD
                     RTKSVIVHIRECSQPPTCES"
     gene            831..1538
                     /locus_tag="VD968_17930"
     CDS             831..1538
                     /locus_tag="VD968_17930"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYE16323.1"
                     /translation="MKEMLTNRILSDLPDAEFARLMPLLEPVSLSAGGRINGAGDKAR
                     FVYFPESAVLSCHAEMQDGKSTEIALIGRDGVTGLASLLGGSRPSPHTLGVTVAGSAL
                     RVRKDDFERELRAGEGLLRALLSYVGDYVTQVSQRAACAVLHRMEQRLAVWLLLLTDR
                     LESGAVELTQERIANHLGVRRAGVTEVAGELQRRGVISYTRGSLRVVNREALEEVACE
                     CYAAMAGARRQRQSTYH"
     gene            1789..1998
                     /locus_tag="VD968_17935"
     CDS             1789..1998
                     /locus_tag="VD968_17935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16324.1"
                     /translation="MPYERGEREFALAAAVCGAVLALGSFYVFRGEAGLKARGLLGAK
                     LVAASLITLLFGLSIVAASLASLIL"
     gene            2278..3195
                     /locus_tag="VD968_17940"
     CDS             2278..3195
                     /locus_tag="VD968_17940"
                     /inference="COORDINATES: protein motif:HMM:NF042769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYE16325.1"
                     /translation="MKRRLGLLICLAALAAAPGQSRQTKPAAESPRRSFREIATLPVV
                     YSVPGMSRVSVKSDLRYTSAGGPHLLMDVYAPPRLRRGERRPAVFFIHGSVPPGSPAK
                     DMGVFRSWGRLAAATGMVGVTFTHRLGYPKPMFAEAAADVSAALGYVRANADSLHVDK
                     DRICLVAYSGGGPLLSSAMRDRPAHVRCLVTFYAFLDVRQSGMHKAHETPEALADFSP
                     INYLATDAETMAPMFIARAGLDEIPGVNDSIDRFVAEAIRRNAPVTVANHPRGAHGFD
                     VLTDDERSREIIRAALDFMRAHLRVRGAE"
     gene            complement(3179..4054)
                     /gene="gluQRS"
                     /locus_tag="VD968_17945"
     CDS             complement(3179..4054)
                     /gene="gluQRS"
                     /locus_tag="VD968_17945"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012951.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HYE16326.1"
                     /translation="MGDGTYRGRLAPSPTGLLHLGHARTFWTAYLRARRRGGALILRN
                     EDLDPQRSRAHFAEAMMEDLRWLGVEWDEGPDVGGPFAPYSQGERREHYLSAWRRLVA
                     GGWVYPCACSRKDLAAAARAPHESGSDEQLYPGTCRPRAGARPPSSETPAGVNWRFRV
                     PDGETISFVDGKQGGQAFVAGRDFGDFLVWRRDDVPAYQLAVVVDDAMMRVTEVVRGS
                     DLLRSTARQLLLQRALGLARPAYYHCDLVLDESGARLSKRHDALSLRALRAAGVSPES
                     LRERLGAAEPLTPPL"
     gene            complement(4073..8413)
                     /locus_tag="VD968_17950"
     CDS             complement(4073..8413)
                     /locus_tag="VD968_17950"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE16327.1"
                     /translation="MVGFLVLAVLAAAVVSTLSFAQGGKKLRTKLVPKPAPAAPTKRA
                     AREAGPERERRERRRNSAQNKSLPRPARPKGDRSPVKLSPREHRLKAGRPFNGDVRNL
                     PKTKLVRREKPEREAPEVEPAVLGEPSAVDAGGSPSAAEIERSAPAPGPLMSFAGLDR
                     ANWGSGSPPDPVGDVGPAHYVQAVNSSVGIYDKATGALIAAFTLDTLMSQGSHGNLCD
                     TDNYGDPIVLYDTFEDRWVITDFAFKLDAQGSVINPPGSFQCIAVSKSGDPVAGGWNF
                     YSINTEGGLGDYPKFGVWPDGLYMTTNMFDYEAFGFYQNPRAYAFNKAQMYAGSPSVQ
                     VVSFDLPYYEFTVLPSNARLQTGTPPPGTPNYCAVVWQYLNVISFYKFSVNWEKISLS
                     TMTGPFDSFTPTTWANPPSSVGQSGTTQTIDTLPVRLMMQNQYTNLGGVESLWNTHTV
                     RGATSSQAAVRFYEVNVTGGAVAPTTAQAETHAPDSTNRFMPSLAVDRAGNMALGYSA
                     SSTSIFPAIRYAGRVASDPPGTLSLTEQTLHAGTGSQTGIKRWGDYAAMTLDPNGCTF
                     WLTAEHYTTTGGNWQTRIGAFQFPQCTPAGSGAVAGQVTAQGGGPLSGATVKLGSRST
                     TTDASGNYSFNNIPAGTYPVMTASHPGRTTATVSSVVVVEAATTVQNFSLPASQASAC
                     LVDTTQADFQNGVTSNVDLNWSPGDILLAPTTAFDHNVVLSNQGDDFSETKWLGQTFV
                     APASGPLTRIDLNLFSLDCDSAPMPSVTVSVRNASGDLPTGADLATATIPGVCNGAGG
                     FFAATFSSSNTVTLNAGTQYALVWRASSALPAGSPAPGYYATVSPGSGAVTTQNPYAG
                     GRRVTSTDGGASWDGAAGNANNDHGFRVYQKNGNVTSGNLVSGAKDANPAAGTTPTWG
                     AISWSATTPAGTSVKFQAAASNSPNGPFNYVGPDGTAATFFANGGSLSQFDGSRYLKY
                     KALLSGPSSASPTLSDVTVCFSNQPTTAATTLTAAPAEATYGGAVNLSATLTDGASGV
                     AGKTIAFTLNGASVGTADTDANGVATLADVSAAGISAGSYPDGVGASFEGGAGLLASS
                     GSADFDVLSATFAATMTSSRNPVPVGLNFSYRIGVTNTGQAPATSLTMVDQLPSQVTF
                     NRATPSQGSCSFASATRTVTCDLGTLTPGSSATVVISVKARQEGTLNNTATFTSPQWD
                     PATGNNTASVNGLQAVNSADLSVKKTDSVDPVAVGETTTYTMTVKNAGPSVATGVTLT
                     DALPAGMTFVSATTSRGTLSTPAVGSGGTVTADLGSMGLNATATVTVTVAVTTHGKFT
                     NTATVTGNESDLDTADNTAKHGTTAFTLLKLLLSSQSVVGGCEPYPTGTLYLTGPAPA
                     GGVTVTLSSTISGASPPPSILIPAGATASAPFTVTTSPVAASQAGVIQARLSVKTVGR
                     SITVLKGGCP"
     gene            8699..9157
                     /locus_tag="VD968_17955"
     CDS             8699..9157
                     /locus_tag="VD968_17955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16328.1"
                     /translation="MIKTALTLALVAASLVFTAAGQGGSCRSGGATVGEEKAGRQRRL
                     AEGLWGGKHIRLEVTGEGASAEFDCATGTLEGPLTLDGDGRFEVKGTFTPERGGPVRE
                     GHEPEPRPARYSGRVKAEVLTLTVTLTDDADDVETFTLTHGREALLTKCR"
     gene            complement(9200..>9764)
                     /locus_tag="VD968_17960"
     CDS             complement(9200..>9764)
                     /locus_tag="VD968_17960"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYE16329.1"
                     /translation="AEHEYDPGRFDAPRAADSLKAAAPDHVFFFGPAEDFLAFARESE
                     RSGMKAALLSSAVMLGRAAFELPAPVAARTYLAYPGELPDGAWSAEFTAVMAKGGAPL
                     RSPAFQAVAYAAAKTLVEAAKSSGRQLTRASLVASLERLRDFQTGVLPPLTFGPNRRV
                     GSEGAYVVGLDLDKKQYAPLGARVTPK"
BASE COUNT         1467 a         3224 c         3489 g         1584 t
ORIGIN      
        1 actatggcaa atgatttaca aggcgcgccg ccagacggcc gcaccccgct cgtcctcgtc
       61 gctgacgacg acgacgacac gcgcacgctc ttcagcatca tgcttgggat gcgcggctgc
      121 gccgtcattg aggccgccga cggcgaggag gccgtccggc tcgccgagag cgccggcccc
      181 gacctcatca tcatggacgg gagcctgccg cgcctcgacg gcttcgccgc ggcccggcgg
      241 atacgaaaga tgcgcagcgt ccccatcgtc ttcgtctcgg gccacgctga gccgtcgttc
      301 ctcgcgctgg cacgcgaggc tggctgcgac gagtacttag tgaagccgcc gagcctcgac
      361 cacctcggcc gcgtgcttca gcaatacctc ggcgtgggcg agcgcgcctt cgccgcttaa
      421 gagtaagggg aggttctgaa catgagagta atatcgccga ctgagcggaa tttattaggg
      481 ctcttcgagc tggacgacgc gggcactgtg ctctactcgc gcgtggagcc ggccggtaaa
      541 ggcggcgccc ggcgcgacct ttcagggctc aacttctacg aggaggtggc gcccttctcg
      601 aacgtcgagg agttccgcag gcgcgtcacg ctgttcgcgc gcggcggcgg ccccgtcaac
      661 agattcaact tcgactgcct gtacgacacc ggctcgctcc acgtaaaggt tctgctcgcg
      721 cgcgtgagcg agcgcgccga ccgcgaccgc accaagtccg tcatcgtgca cataagggag
      781 tgctcgcagc cgccgacgtg cgagtcctga aattcgagga ggttgcgata atgaaagaga
      841 tgctcaccaa caggatactt tccgacctgc ccgacgcgga gttcgcgcgg ctcatgccgc
      901 tgctcgagcc cgtgtcgctc tccgcgggcg ggcgcatcaa cggggccggc gacaaggcgc
      961 ggttcgtcta tttccccgag agcgcagtcc tctcctgtca cgccgagatg caggacggca
     1021 agtccaccga gatcgccctc atcggccgcg acggcgtgac gggcctcgcg tcgctcctcg
     1081 gcggctcgcg gccgtcgccc cacacgctgg gcgtcaccgt cgcgggcagc gcgctgcgcg
     1141 tcaggaaaga tgatttcgag cgtgagcttc gcgccggcga ggggctgctc cgcgcgctgc
     1201 tctcctacgt gggcgactac gtcacgcagg tctcgcagcg cgccgcttgc gcagtcctcc
     1261 accgcatgga gcagcgcctg gccgtctggc tcctgcttct gacagaccgt ctggaatcgg
     1321 gcgccgtcga gctgacgcag gagaggatag ccaaccacct gggcgtcagg cgcgcgggcg
     1381 tcaccgaggt agccggcgag ttgcagcgcc gcggcgtcat tagctacacg cgcgggagcc
     1441 tgcgcgtcgt caaccgcgag gcgctcgaag aggtcgcctg cgagtgctac gccgcgatgg
     1501 ccggcgcgcg ccggcagcgg cagagcacct accattaaag cccgcgcccg ctacgggcat
     1561 ccgtccgccc acgccccccg cgcccctaat agcaccgcgc ctctccctcc cgcaccgcgg
     1621 tgctatactt aaacgtaacg agttcgcaag cgacgttcgg ccgcgccgcc gtcgggcgcc
     1681 gagggcgcgc accggcccgc gaggagcagg aaaccgttcg tggcctccgg cagagggaaa
     1741 cgcgtactgg tttacaccgc gtcgctgttg acggcgccgc tgcccgtcat gccttacgag
     1801 aggggggagc gggagttcgc gcttgcggcg gcagtgtgcg gcgccgtcct cgcgctcggg
     1861 agcttctacg tcttccgcgg ggaggccggg ctcaaggcgc gcggcctgct cggcgcgaag
     1921 ctggtcgcgg cgtcgctcat cacgctgctg ttcggcctct ctatcgtcgc cgcctccttg
     1981 gcgagtctta ttctgtaatt ctgaccatga cctgggtaaa agcggccgac ttcacgcccc
     2041 cggaaaacga gcccgtgctc atccacgacg acggggaaag caggatggtg gtcgggcgct
     2101 acatcaaagg ccggtgatac gtcgagaacc ggagcgacgg ccggctccgc gaggtcgcgg
     2161 gggtcacgca ctgggcctgg attctcgact cccagactta cgacagcgcc gacgattagc
     2221 cgaagcccgg cgcgccttca atcgcaccgc ccggacggcg agcgggagat ttcatccatg
     2281 aagcggcgtc tcggcctctt gatttgtctc gcagcgctgg ccgctgcgcc gggacagtcc
     2341 cgacagacta agccggcggc ggaaagcccg cgccggagct tccgcgagat tgcgacgctg
     2401 cccgtcgtct atagcgtgcc ggggatgagc agggtctcgg tcaagtcgga tttaaggtac
     2461 acgagcgcag gcgggccgca cctcttgatg gacgtttacg ccccgccgcg actgcgcagg
     2521 ggcgagcggc gcccggccgt ctttttcata cacggcagcg tgccgcccgg aagccccgcc
     2581 aaggacatgg gcgtcttcag gtcttggggg cggcttgcgg ccgccaccgg gatggtcggc
     2641 gtgacgttca cgcacaggct cggctacccg aagccgatgt tcgccgaggc ggccgcggac
     2701 gtttcggccg cgctcggcta cgtccgcgcc aacgccgact cgctgcacgt tgacaaagac
     2761 cgcatctgcc tcgtcgcata ctccggcggc ggccccctgc tcagctcggc gatgcgcgac
     2821 aggcccgcgc acgtgcgctg ccttgtgacc ttctacgcct tcctcgacgt gcggcagtcc
     2881 ggaatgcaca aggcccacga gacgcccgaa gcgctcgccg acttctcccc catcaattac
     2941 ctcgcaaccg acgccgagac gatggcaccc atgttcatcg cccgcgcggg gctggacgag
     3001 atacccggcg ttaacgattc gattgaccgc ttcgtcgccg aggccattcg aaggaacgcg
     3061 cccgtcacag tcgccaacca cccgcgcggc gcccacggct tcgacgtgct gacggacgac
     3121 gagaggtcgc gcgagattat ccgcgccgcg ctcgacttca tgagggcgca tctgagagtc
     3181 agaggggcgg agtgagaggc tcggccgcgc cgagcctctc gcggaggctc tcgggcgaga
     3241 cgcccgctgc gcgcagcgcg cgcaggctca gcgcgtcgtg gcgcttcgag aggcgcgcgc
     3301 ccgactcgtc gagcacgagg tcgcagtggt agtaggccgg gcgtgcgagc ccgagcgcgc
     3361 gctgcaaaag gagctggcgg gcggtcgagc ggagcaggtc tgagccgcgc accacctccg
     3421 tcacgcgcat catcgcgtcg tccacgacga ccgccagttg gtaggcgggg acgtcgtcgc
     3481 ggcgccacac gaggaagtcg ccgaagtccc ggcccgccac gaacgcctgc ccgccctgct
     3541 ttccgtcaac gaaggaaatc gtctcgccgt cggggactcg gaatcgccag ttgactcccg
     3601 ccggagtttc ggacgaaggc gggcgggcgc ccgcgcgcgg ccggcacgtg ccgggataga
     3661 gctgctcgtc cgagcccgac tcgtgcggcg cccgcgccgc ggccgcgagg tcttttcgcg
     3721 agcaggcgca cgggtaaacc cacccgcccg ccacgagccg tctccacgcc gaaaggtaat
     3781 gctcgcgcct ctcgccctgc gagtacggcg cgaaggggcc gcccacatcc ggcccctcat
     3841 cccactcgac gccgagccag cgaaggtctt ccatcatcgc ctcggcgaag tgcgcgcgcg
     3901 agcgctgcgg gtcgaggtct tcgttgcgga gtatgagtgc gccgccgcgt cggcgcgcgc
     3961 gaaggtaggc agtccagaag gtgcgggcgt ggccgaggtg cagcagcccc gtcggcgaag
     4021 gcgcgaggcg gccacggtac gtgccgtcac ccatgagcgg aacgggccgg gctcaaggac
     4081 agcccccctt taagaccgtt atgctgcggc ccaccgtctt caccgagagc ctcgcctgta
     4141 ttacgcccgc ctggctcgcc gcgacaggcg aggtcgtgac agtgaagggc gcgctcgcgg
     4201 tcgccccggc cggtataagg atgctcgggg gtgggctcgc tccgcttatc gtgcttgaga
     4261 gcgtgacggt gacgccgccg gccggcgcag gccccgtaag gtacagagtg ccggtcgggt
     4321 agggctcgca acctcccacg accgactgcg aagagagcag cagcttcaac agcgtgaagg
     4381 ccgtcgtccc gtgcttcgcg gtgttgtcgg cggtgtcgag gtcgctctcg ttgccggtga
     4441 cggtcgccgt gttggtgaac ttgccgtggg ttgtgaccgc gacagtcacg gtgacggtcg
     4501 ccgtggcgtt caagcccatc gagccgaggt cggccgtgac cgtcccgccc gagcccacgg
     4561 ccggggtgct gagcgtgccg cgcgaggtcg tggccgagac gaaggtcatg cccgcgggga
     4621 gcgcgtccgt cagtgtgacg cccgtggcga cggacggccc cgcgttcttg acggtcatcg
     4681 tgtaggtcgt cgtctcgccg acggcgacgg ggtcaaccga gtcagtcttc ttcacagaca
     4741 ggtctgcgct attgacggcc tgaagcccgt tgaccgaggc cgtgttgttg ccggtcgcgg
     4801 gatcccactg cggcgacgtg aaggtggccg tgttgttaag agtgccttcc tgccgcgcct
     4861 tgaccgatat gaccacagtg gcggaggagc cgggagttag cgtgccgagg tcgcacgtca
     4921 ccgtcctcgt ggccgaggcg aaagagcacg agccctgcga cggcgtcgca cggttgaagg
     4981 tcacctgcga gggcaactga tcaaccatcg tcaggctcgt ggcgggggcc tgcccggtgt
     5041 tcgtcacacc tatacggtag ctgaagttca gcccgacggg gacggggttt cgcgacgagg
     5101 tcatcgttgc ggcgaacgtc gccgacagca cgtcgaagtc ggcgctgccg ctgctcgcga
     5161 gcagcccggc tccgccctcg aagctcgcgc cgacgccgtc cgggtaactg ccggcgctta
     5221 tgccggccgc gctcacgtcg gcgagcgtgg cgactccgtt cgcgtctgtg tcggccgtcc
     5281 cgacgctcgc gccgttgagc gtgaaggcga tggtcttgcc tgcgacgccg ctggcgccgt
     5341 cggtcagcgt cgccgacagg ttgacggcgc cgccgtaggt ggcctcggcc ggtgcggccg
     5401 tcagggtcgt ggcggccgtg gtcggctggt tgctgaagca gacggtcacg tcagagagcg
     5461 tcggcgaggc ggacgaaggg ccggagagca gcgccttgta tttgaggtaa cgcgagccgt
     5521 cgaactgcga gagcgagccg ccgttcgcga agaaggttgc ggccgtgccg tcggggccga
     5581 cgtagttgaa aggcccgttg gggctgttgc tggcggcggc ctggaacttg acgctcgtgc
     5641 cggcgggcgt cgtcgcgctc caggagatcg ccccccatgt gggggtcgtg ccggcggcgg
     5701 ggttcgcgtc cttcgcgccg gagacgaggt tgccggaggt cacgttgccg ttcttctgat
     5761 agaccctgaa gccgtggtcg ttgttcgcgt tgccggcggc cccgtcccaa gaggcgccgc
     5821 cgtccgtcga agtgactcgg cggccgcccg cgtatgggtt ctgtgtggtt acggcgccgg
     5881 agccggggct gacggtggcg tagtagccgg gcgcggggct cccggcgggc agcgccgacg
     5941 acgcgcgcca gacgagcgcg tactgagtgc cggcgttgag cgtcaccgtg ttcgagcttg
     6001 agaaggtcgc cgcgaagaag cctccggccc cgttgcagac gccggggatt gtcgcggtgg
     6061 cgaggtcggc gcccgtcggc aggtcgccgg aggcgttgcg taccgagacc gtgacgctcg
     6121 gcatcggcgc agaatcgcag tcaaggctga agaggttcag gtcaatgcgc gtcaaaggcc
     6181 ccgaggccgg ggccacgaac gtctgcccca gccacttcgt ctccgagaag tcatcgccct
     6241 gattagaaag aacgacgttg tggtcgaacg cagtggtcgg cgcgagcagg atgtcgccgg
     6301 ggctccagtt caggtcaacg ttcgaggtga cgccgttctg gaagtcggcc tgcgtcgtgt
     6361 caacgaggca cgcgctcgcc tgcgaggccg ggagcgagaa gttctgcacg gtcgtcgcgg
     6421 cctctacgac gacgacgctg ctcacggtcg cggtcgtgcg gcccggatgg gaggccgtca
     6481 ttacggggta ggtgccggcg ggtatgttgt tgaaagagta attgcccgag gcgtcggtcg
     6541 tagtcgagcg gctgccgagc ttgacggtcg cgccggatag ggggcctccg ccctgcgccg
     6601 tcacctgccc ggccacggcg ccgctccccg cgggcgtgca ctgcgggaac tggaacgcgc
     6661 ctatgcgcgt ctgccagttg ccgcccgtcg tcgtgtagtg ctcggccgtg agccagaagg
     6721 tgcagccgtt cgggtcgagc gtcatcgcgg cgtagtcgcc ccagcgcttt atgcccgtct
     6781 gcgagcccgt gccggcgtgc agggtctgct cggtcagcga gagcgtgccg ggcgggtcgg
     6841 aggccacccg ccccgcgtag cgtatggccg ggaagatcga ggtgctcgaa gcgctgtacc
     6901 cgagcgccat gttgcccgcg cggtcaacgg cgaggctcgg catgaagcgg ttcgtcgagt
     6961 cgggggcgtg cgtctccgcc tgcgccgtag tgggggcgac cgccccgccc gtgacgttga
     7021 cctcgtagaa gcgcacggcc gcctgcgacg aggtcgcgcc gcgcaccgtg tgcgtgttcc
     7081 agagggactc gacgccgccc aggttcgtgt actggttctg catcatcagg cggacgggca
     7141 gcgtgtcaat cgtctgcgtg gtgccgctct gcccgaccga agagggcggg ttggcccatg
     7201 tagtgggcgt gaacgagtcg aacggccccg tcatggtcga gagcgagatc ttctcccagt
     7261 tgacgctgaa cttgtagaag cttattacgt tgaggtactg ccagacgacg gcgcagtagt
     7321 tgggcgtgcc gggcgggggc gtccccgtct gaaggcgcgc gttgctcggc agcacggtga
     7381 actcgtagta gggcaggtcg aaggatacga cctggactga aggtgagccg gcgtacatct
     7441 gcgccttgtt gaaggcgtag gcgcgcgggt tctggtagaa cccgaaggcc tcgtagtcga
     7501 acatgttcgt cgtcatgtag aggccgtcgg gccagactcc gaacttgggg tagtcgccga
     7561 ggcccccctc ggtgtttatc gagtagaaat tccagccgcc cgccacgggg tcgcccgact
     7621 tcgagacggc gatgcactgg aaggagcccg gcgggtttat gacgctcccc tgcgcgtcga
     7681 gtttgaaggc gaagtccgtg atgacccagc gatcctcgaa cgtgtcgtag agcacgatgg
     7741 ggtcgccgta gttgtccgtg tcgcaaaggt tgccgtggct gccctggctc atcagcgtgt
     7801 cgagagtgaa ggccgcgatg agcgcgcccg tagccttgtc gtagatgcct acggaggagt
     7861 tgacggcctg cacgtagtgc gcggggccta cgtcgcccac ggggtcgggc ggcgagcccg
     7921 acccccagtt tgccctgtcc agcccggcga agctcatgag cggcccgggg gcgggcgcgc
     7981 tgcgctctat ttctgcggcg gagggtgacc ccccagcgtc aaccgcggac ggctcgccca
     8041 acacggcggg ctccacctcc ggcgcctcgc gctcgggctt ctcgcgcctg accaatttag
     8101 tcttcgggag gtttcgcacg tcgccgttga aggggcgccc ggccttcagg cggtgctccc
     8161 tggggctcag cttgacgggg ctgcggtcgc ccttcggtcg cgcggggcgc ggaagcgact
     8221 tgttctgcgc ggagttgcgg cgccgctcgc gcctctccct ctccggcccg gcctcgcgcg
     8281 ccgcgcgctt cgtcggggcc gctggcgccg gctttggcac gagcttcgtg cgcagcttct
     8341 tcccgccctg cgcgaaagag agcgtcgaga cgaccgccgc cgccagcacg gccaacacga
     8401 ggaacccgac cacgcgccgg ccgccctccg gcgaaataat ttttcgcctg gaggggctcg
     8461 ccgtgggcgc ggcgttccgg gtgcttctct ttttcatcgg gcgcactatc tttcttattc
     8521 aaggggacgg acgcttaagg cgggtttgcc ttgggggaag gcaaaagctt gtaaaagata
     8581 ttccggcgcg ctgcggcgtg tcaaatcact taaacgcgca gggcggcggc gctgtacggg
     8641 ggctacgcgg cggtcgtagt atagggcgtg gtagttaagc gaggtgccgc ccgaagccat
     8701 gatcaaaaca gcactgacac tggcgctcgt cgcggcctcc ctcgtcttca cggcggccgg
     8761 gcagggcggc tcctgccgca gcggaggagc gaccgtgggc gaagaaaagg cgggcaggca
     8821 aaggcgcctg gccgaagggc tctggggcgg caaacacata cggctcgaag tgacgggcga
     8881 aggcgcgagc gctgagttcg actgcgccac cggcacgctc gaaggcccct tgacgctcga
     8941 cggcgacggc cggttcgaag tgaaaggcac cttcacgccg gagcgcggcg gccccgtccg
     9001 cgaaggccac gagccggagc cgcgcccggc ccgctattcg ggccgcgtca aggccgaggt
     9061 attgacgctc accgtcacgc tcaccgacga cgccgacgac gttgagacct tcacgctcac
     9121 gcacggccgg gaggctttac tcacgaagtg ccggtagcgc gggccggccg ccctcactct
     9181 tatcttcatc ccggctgtct cactttggcg tgacgcgggc gccgagcggg gcgtactgct
     9241 ttttgtcgag gtcgaggccg acgacgtatg cgccctcgga gccgacgcgg cggttggggc
     9301 cgaaggtgag gggcggtagc acgcccgtct ggaagtcgcg cagccgttcg aggctcgcaa
     9361 ctaatgatgc cctggtcaac tgcctgccgc tcgacttcgc ggcctcgacg agggtcttcg
     9421 cggcggcgta ggcgacggcc tggaaggcgg ggctgcgcag cggcgcgccc cccttcgcca
     9481 tgacggccgt gaactcggct gaccacgcgc cgtcggggag ttcgccgggg tacgcgaggt
     9541 atgtgcgggc cgcgacgggc gcgggcagct cgaaagccgc gcgtccgagc atgactgccg
     9601 agctgagcag cgccgccttc atccccgagc gttcggattc acgcgcgaag gcgaggaagt
     9661 cttcggccgg gccgaagaag aagacgtggt cgggcgcggc tgccttgagc gagtcggccg
     9721 cgcgcggggc gtcgaagcgg ccggggtcgt actcgtgctc ggcg
//
LOCUS       DASPKR010000678         2549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_364810, whole genome shotgun sequence.
ACCESSION   DASPKR010000678 DASPKR010000000
VERSION     DASPKR010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_364810"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1128
                     /locus_tag="VD968_17965"
     CDS             <1..1128
                     /locus_tag="VD968_17965"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE16330.1"
                     /translation="IPAGAEVIDLGDATLLPGFMDAHTHLSGEATDDWKQDELDALKK
                     SPAEQALDASVYARRTLLAGFTTVRDLGSGDLVDVGLRNAARGGKISGPRMIVAVRGI
                     GATGGHCDPTVGYRPELFDRDSGVAASVANGADAVRAAVRLNIKEGADVIKVCATGGV
                     LSLNDDVRSPQLTQGELDALVDEAHARGRKAAAHAHGAEGAKRAVRAGIDSIEHGSFL
                     DEEALDLMRQRGTFLVPTLMAGEGLREKLEKGSYFPPQVEAKARAAMASRDQMFRRAV
                     EKRVRIAFGTDAGVFAHGRNAEEFRHMVRLGMTPAAALRAATSVVAELLGVSDRLGSL
                     EAGKLADIVAVPGDPLQDIRQTERVFFVMKEGEVFKNERVK"
     gene            1153..1650
                     /locus_tag="VD968_17970"
     CDS             1153..1650
                     /locus_tag="VD968_17970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16331.1"
                     /translation="MLARISFAALFLTTGVAFGFALGRGPADALAQGEQARQTAVRGH
                     AVASSSAKPPGERLVLKSSEEPRLPFKLVPAGRKLVLTDVMYHAQGSLRQDMTINVAD
                     EDPATGTHEILFQVRISPGESQDVHLCSGYVIPAGHALAAFTNAGIEPGQLVSLDVSG
                     HLTAE"
     gene            complement(1662..>2549)
                     /locus_tag="VD968_17975"
     CDS             complement(1662..>2549)
                     /locus_tag="VD968_17975"
                     /inference="COORDINATES: protein motif:HMM:NF019935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16332.1"
                     /translation="AAGPRLAALGLGRLGSGGVDYGSDLDLVLVYDPLVPPPLAGLTH
                     EESYARMAELLTVALSSLTRDGYLYRVDLRLRPDGKNGAPASSSQAFVSYLSERAEVW
                     EWLAHVKLRAVAGDMELGRAVERRARAAVHDAALRAPAEELRAQTRRVRERLERERAR
                     RDSQRAADIKYGPGGMLDVYFASRYLQLRDRVQDDAGERSTGATLRRLRDAGSLSETD
                     FRAMSEGYALLRRLDHAMRLVAGRSTLLPAAPDHPTLRDLARRTGFDGPEALARELRA
                     RARSVRAAYDRVTGGGEGK"
BASE COUNT          381 a          895 c          909 g          364 t
ORIGIN      
        1 atccccgcgg gcgcagaagt cattgacctc ggcgacgcta ctctcctgcc cggcttcatg
       61 gacgcgcaca cgcacctttc gggcgaggcc acggacgact ggaagcagga cgagctcgac
      121 gcgctcaaga agtcgccggc cgagcaggcg ctcgacgcga gcgtctatgc gcgccgaact
      181 ctgttggcgg gcttcacgac cgtcagagat ttgggctccg gcgacctcgt tgacgtgggg
      241 ctccgcaacg ccgcgcgcgg gggcaaaatc agtgggccgc gcatgatagt cgccgtgcgc
      301 ggcatcggcg cgacgggcgg tcactgcgac ccgacggtcg gctaccgccc cgagcttttc
      361 gaccgcgact cgggcgtcgc cgcgtcggtc gccaacggcg cggacgccgt gcgcgcagcc
      421 gtccgcctca acatcaagga gggcgccgac gtgataaagg tctgcgcgac gggcggcgtg
      481 ctctccttaa acgacgacgt gcgctctccg cagttgacgc aaggggagtt ggacgcgctc
      541 gtggacgagg cgcacgcgcg gggccgcaag gctgccgccc acgcccacgg agcggagggc
      601 gccaagcggg ccgtgcgcgc gggcattgat tccatcgagc acggctcgtt cctcgacgaa
      661 gaggcgctcg acttgatgag gcagcgcggc acgttcctcg tgccgacgct catggccggc
      721 gaggggctga gagagaagct cgaaaagggc tcgtacttcc cgccgcaggt cgaggcgaag
      781 gcgcgggccg cgatggcgag ccgcgatcag atgttccgcc gcgctgtcga gaagcgagtc
      841 cgcatagcct tcggcaccga cgcgggcgtc ttcgcgcacg gccgcaacgc cgaggagttc
      901 cgccacatgg taaggctcgg catgacgcct gccgcggcgc ttcgcgcggc cacgtcggtc
      961 gtcgccgagt tgctcggcgt ctccgaccgc ctcggctcac tcgaagccgg caagctcgcg
     1021 gacatcgtcg ccgtccccgg cgaccccttg caggacatac ggcagaccga gcgcgtcttc
     1081 ttcgtgatga aggagggcga ggtcttcaag aacgaacggg tgaagtgaga cggcttttat
     1141 aaggagggcc tgatgctggc aagaatttct ttcgccgcac tgtttctcac gaccggcgtg
     1201 gcgttcggct tcgcgctggg ccgcggcccc gccgacgcgc tcgcgcaggg cgagcaggcg
     1261 cggcagactg ccgtgcgcgg ccacgccgtc gcctcctctt cggcgaagcc gccgggcgag
     1321 cgcctcgtgc tcaagtcttc cgaagagccg cgcctgccgt tcaagctcgt ccccgcgggc
     1381 aggaagctcg tcctgacgga cgtcatgtac cacgcgcagg gctccctccg gcaggacatg
     1441 acgattaacg tggccgacga agaccccgcg acgggcacgc acgagattct cttccaggtg
     1501 cgaatctcgc cgggcgagtc gcaggacgtg catctgtgct ccggctacgt cataccggcg
     1561 ggccacgcgc tcgccgcctt cacgaacgcc ggcatcgagc cgggccagct cgtaagcctc
     1621 gacgtgtccg gccacttgac ggccgaatga ggctggcccc atcacttccc ttcaccgccc
     1681 cccgtaactc tgtcgtaggc ggcgcggacg gagcgcgcgc gggcgcggag ctctcgggcg
     1741 agggcttcgg ggccgtcgaa gcccgtgcgg cgggcgaggt ctcgtagcgt cgggtggtcg
     1801 ggtgcagcgg gcaggagcgt ggagcgcccg gcgacgagcc gcatggcgtg gtcgagccgg
     1861 cgcagcaaag cgtagccctc gctcatggcc cggaagtcgg tctcggagag cgagcccgcg
     1921 tcgcgcaggc gccgcagcgt cgcgcccgtg gagcgttcgc ccgcgtcgtc ctgcactcgg
     1981 tcgcgcagtt gcaggtagcg cgaggcgaag taaacgtcga gcatgccgcc ggggccgtac
     2041 ttgatgtccg ccgcgcgctg cgagtcccgg cgcgcgcgct cgcgctccag cctttcgcgc
     2101 acgcgccgcg tctgcgcgcg aagctcttcg gccggggctc gcagcgccgc gtcgtggacg
     2161 gccgcgcgcg cgcgccgctc gaccgccctg cccagctcca tgtctcccgc caccgctcgc
     2221 agcttcacgt gcgcgagcca ctcccagacc tccgcgcgct ccgacaggta agagacgaac
     2281 gcctgcgacg acgacgccgg cgcgccgttc ttgccgtctg gccgcagtcg taggtcaact
     2341 cggtacaggt agccgtcgcg cgtgaggcta gacagggcga cggtgagcag ctccgccatg
     2401 cgcgcgtaag actcctcgtg cgtgaggccc gcgagcggcg gaggcacgag cgggtcatag
     2461 acgagcacga ggtctaggtc ggagccgtag tcaacgccgc cgctgcccag gcgtcccagg
     2521 ccgagcgcgg ccaggcgcgg cccggccgc
//
LOCUS       DASPKR010000679         5455 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1404651, whole genome shotgun sequence.
ACCESSION   DASPKR010000679 DASPKR010000000
VERSION     DASPKR010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5455)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5455
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1404651"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..921)
                     /gene="mptB"
                     /locus_tag="VD968_17980"
     CDS             complement(<1..921)
                     /gene="mptB"
                     /locus_tag="VD968_17980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenol phosphomannose-dependent alpha 1,6
                     mannosyltransferase MptB"
                     /protein_id="HYE16333.1"
                     /translation="MRTLRPHKLYAVGALTAAVYLAALVFYREGPAAHTRTGKELFAW
                     FICLSLLPLYVWGYRVVSGEGETAGARTVVLFSAAFCLLALFTHPFHSTDVFGYVNRG
                     WQQVHYGLNPYEHRLADVPGWREDPMFREHWLYNPTPYGFLFMLLARAVCAAGGGNWW
                     ATVLLFKAVNVAAFAGSAWLVWAATRRLEAAGRVRSLYLLTWSPLLLMHHVANGHNDL
                     LTGFFVALALYFAFAGRELWIIPALSAATLLKYGPAVLIPFALVFVVRRKGWGVGLAG
                     CAISAALTVVVTAPYLADWERLRLEDIRDNA"
     gene            complement(948..1778)
                     /locus_tag="VD968_17985"
     CDS             complement(948..1778)
                     /locus_tag="VD968_17985"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HYE16334.1"
                     /translation="MLASLCAGFASCSRPKGEERRYDLKGKIVSVEREKGQINVDHEE
                     IPGFMAAMVMPFPIKDKDVLGAMQPGDTLQATLVVGDEGYWLENIAVTKALPGAEAAA
                     AAAGAEPRPGAEMPDFKLVNQDGRTVRARDLRGRAVLVTFIYTRCPLPDQCPLMSANF
                     ADVSRELSKDEALGSKARLLSVTLDPEFDTPEVLARYAERYGTAGSYGRWDFLTGDPA
                     EVRRLAEFFGLMYKAEDGQVIHSLRTAVVGPDGKLYKVYRGNGWKPEEALKDLRGLVQ
                     "
     gene            1935..2885
                     /locus_tag="VD968_17990"
     CDS             1935..2885
                     /locus_tag="VD968_17990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 5,10-methylenetetrahydrofolate
                     dehydrogenase/5,10-methenyltetrahydrofolate
                     cyclohydrolase"
                     /protein_id="HYE16335.1"
                     /translation="MAEERAGGAALKLDGERAAAEIKREVAAEVGLLRAERGVVPCLA
                     VAQVGEDPASTVYVRSKVRACEELGIKSEHYLLPAGTTTEELLSLVGELNAREEVDGI
                     LVQLPLPGGVEESKVIEAIDPSKDVDGFHPVSVGRMMLRRPSLLPCTPAGIIELLVRE
                     GVEIKGARACVLGRSNIVGRPVAELLLQRDATVTVCHSRTRDLPSVTREADILVAAIG
                     RAGFVRAEHVKPGAVVVDVGINRVTDEAQVRDFFGDAAGSRMEKMRERGYTIVGDVHP
                     AEVGRVAGRLTPVPGGVGLLTVAMLMRNTVTAARRRRGEG"
     gene            2895..3518
                     /gene="coaE"
                     /locus_tag="VD968_17995"
     CDS             2895..3518
                     /gene="coaE"
                     /locus_tag="VD968_17995"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: protein motif:HMM:TIGR00152.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HYE16336.1"
                     /translation="MLRVGLTGSIAVGKSYVTALLAGLGCRVIDADEVARRVVEPGTE
                     GLRRVVEAFGGGVLAADGTLDRARLGAVVFGDEGKRRLLNSILHPLIMEEQDEQLRRW
                     EREEPHGIGVVDAALMIESGGYRRFDKLIVVHCRPEVQLERLMRRNSLTREDAERRIA
                     SQMPQEEKLRYADFTIDTSGDYEETRRQTEEVYLKLRDLAEARKAQR"
     gene            3587..5359
                     /locus_tag="VD968_18000"
     CDS             3587..5359
                     /locus_tag="VD968_18000"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HYE16337.1"
                     /translation="MKALLSLALASSLLTGGCFESERGERFYGRAVAPSEQVFRWSDG
                     GLPSVFDPARAAAPPDTDAVRALFEGLTDYEPATLRPVPSVASRWEPSEGGRVWVFHL
                     RRDARWSNGDAVTAGDFVRSWQRSLRLGEGSPHSKLLANIEGARAFAPPRPNGEETVP
                     GAEEQQPAAVAPPFGAVALDAHTLRVRLERPDRNFPALVAHTVFRPVHELSPGADLPA
                     LREEQEQPGAAGGVTGLVTNGAFSLSKLGGDSVVLERAKNYWDAASVSLERVHFVDKG
                     DTESALAAYRAGEVDAVTNSTFEPLAVKLLTPYEDFRRETFGALNYYRFNTARPPFDD
                     RRVREALTLALDLERLSADTLGGATEPARRFLPGASEADLPNSEALIGQNAERARTLL
                     AEAGFPGGENFPRVRLLVNRNEQQRLIAQTVARMWRSALGIEAEVIVKDWEEYEAMLR
                     AGDFDVARRSIVLQTTDEETNMLALFGDPVPTSADDDEAAAGASPSPTSPATPAEPGA
                     APSESPADPARRPPILTEEEALRELPAIPLYFASSYALVKPYVEGFEPNLLDAHSLKR
                     VRLNTAWKPPEGANQSRSARVFTP"
BASE COUNT          909 a         1859 c         1891 g          796 t
ORIGIN      
        1 cgcgttgtca cgtatgtctt cgagcctgag ccgctcccag tccgcaaggt agggcgcggt
       61 gaccaccacg gtgagggccg cgcttatcgc acagcccgca aggcccacgc cccacccctt
      121 gcgcctcacg acgaagacta aagcgaaggg gattaagaca gccgggccgt acttcagaag
      181 cgtcgcggcc gagagcgccg gtattatcca gagctcacgg cccgcgaagg cgaagtaaag
      241 cgcgagcgcg acgaagaagc cagtgagcag gtcgttgtga ccgtttgcta cgtggtgcat
      301 caggagcagc gggctccacg tcaggaggta gagcgagcgc acacggcccg cggcttcgag
      361 cctgcgcgtg gcggcccaca cgagccatgc gctccccgcg aaggccgcga cgttcactgc
      421 cttgaacagc agcacggtcg cccaccagtt gccgccgccc gccgcgcaga ccgcccgagc
      481 tagcagcatg aagaggaagc cgtagggcgt cgggttgtag agccagtgct cgcggaacat
      541 cgggtcttcc cgccagcccg gcacgtcggc gaggcggtgc tcgtaagggt tcaggccgta
      601 gtgaacctgc tgccagccgc ggttgacgta gccgaacacg tccgtcgagt ggaacgggtg
      661 cgtgaagagc gcgagcaggc agaaggcggc ggagaagagg acgacagtgc gcgcgcccgc
      721 cgtctccccc tcgccgctca cgacgcggta gccccaaacg tagagcggga ggagcgagag
      781 gcatatgaac cacgcgaaca actccttgcc cgtccgcgtg tgcgccgcgg ggccttcgcg
      841 gtagaagacg agggcggcga gatagaccgc ggccgtgaga gcgccgaccg cgtaaagttt
      901 gtgtggacgg agcgtccgca aagggcgcct cccacggccc gtctgcccta ctgaacgagg
      961 ccccgcaaat ccttcagagc ctcctcgggc ttccagccgt tgccgcgata gaccttgtag
     1021 agcttaccgt ccggcccgac gacggccgtc cgcagagagt gtatgacttg gccgtcttcc
     1081 gccttgtaca tgaggccgaa gaactcggcg agccgcctta cctcggccgg gtcgcctgtg
     1141 aggaaatccc agcgcccgta ggagccggcg gtgccgtagc gctccgcata gcgtgcgagg
     1201 acttctggcg tgtcgaactc ggggtcgagc gtaacgctca gcaaccgagc cttgctgccc
     1261 agtgcttcgt ctttgctaag ttcccggctc acgtcggcga agttcgcgct catcagaggg
     1321 cactggtcgg gcagggggca gcgcgtatag atgaatgtga cgagcacggc gcggccgcgc
     1381 aggtcgcgcg cacggactgt cctcccgtcc tggttgacga gcttgaagtc gggcatctcg
     1441 gcgcccggcc tgggctcggc gcccgcggcc gccgcggccg cttcggctcc cggcagggcc
     1501 ttcgttacgg cgatgttctc aagccagtag ccctcgtcgc cgacgacgag cgtcgcctgc
     1561 aaggtgtcgc cgggctgcat ggccccgagc acgtctttgt ccttgatggg gaagggcatc
     1621 accatcgcgg ccatgaagcc gggaatctcc tcgtgatcaa cgttgatctg ccccttctcg
     1681 cgctcgacag agacgatctt gccctttagg tcgtagcgac gctcctcgcc cttcgggcgc
     1741 gagcacgagg cgaagccagc gcagagcgag gcgagcaaaa aggctgcgga taaagttgtc
     1801 ctcagggggg tgcgggcggg gctcatgcgc cggattctgc ggcacgcggc ggcgcgcgcg
     1861 caaccctccg cgacaggcgt gacgcggcgc cggtgaacta tgctaggatg aaatcacccg
     1921 tgatgaagga aaaaatggca gaagagaggg cgggcggcgc tgccctgaag ctggacggcg
     1981 agcgcgcggc cgccgagata aagcgcgagg tcgcggccga ggtcgggctg ctccgcgccg
     2041 agcgcggcgt cgtcccttgc ctcgccgtcg ctcaggtcgg cgaagacccc gcctcgaccg
     2101 tctatgttcg gagcaaggtt cgcgcctgcg aggagctggg cataaagtcc gagcactact
     2161 tgctcccggc cgggacgacg acggaagagc tgctgtcttt agtcggcgag ctgaacgcgc
     2221 gcgaagaggt tgacggaata ctcgtacagc tccctctgcc cggcggcgtc gaggagtcga
     2281 aggtgataga ggcgattgac ccctcgaagg acgttgacgg cttccacccc gtgagcgtcg
     2341 gacggatgat gctgcgacgc ccctcccttt tgccctgcac cccggccggg ataatcgagc
     2401 tgctcgtgcg cgagggcgtc gagatcaagg gcgcacgcgc ctgcgtcctc ggccgcagca
     2461 acatcgtggg ccgccccgtc gcggagcttc tgctccagag ggacgcgacc gtcacggtct
     2521 gccactcgcg cacgcgcgat ctgccctcgg tgactcgcga ggccgacata ctcgtcgccg
     2581 ctatcggccg cgccgggttc gtccgcgcag agcacgtcaa gccgggcgca gtagtcgtgg
     2641 acgttggcat caaccgcgtt acggacgagg cgcaggtgcg cgacttcttc ggcgacgcgg
     2701 ccggctcgcg catggagaag atgcgcgagc gcggctacac catcgtcggc gacgtgcacc
     2761 cggctgaggt cgggcgcgtc gcgggccggc tcacgcccgt gccgggcggc gtggggctgc
     2821 tgacggtcgc gatgctcatg cgcaacaccg tcacggccgc gcggcgcagg cgcggggaag
     2881 gttaggcggt cgcgatgctg cgcgtgggtc tgaccgggtc aatcgcggtc gggaagtctt
     2941 atgtgacggc cctgcttgcc gggctcgggt gccgcgtgat tgacgccgac gaggtggcgc
     3001 gccgcgtggt cgagccgggg actgagggct tgcgccgcgt ggtcgaagcg ttcggcgggg
     3061 gagtgctcgc ggcagacggc acgctcgacc gcgcgcggct cggcgccgtc gtcttcggcg
     3121 acgaggggaa gaggcggctg ctcaactcaa tcctgcaccc gctgataatg gaggagcagg
     3181 acgagcagct ccggcgctgg gaacgggaag agccgcacgg catcggcgtc gttgacgccg
     3241 cgctgatgat cgagtcggga ggctacaggc gtttcgacaa gctcatcgtc gtccactgcc
     3301 ggccagaagt gcagctcgaa aggctcatgc ggcgcaacag ccttacgcgc gaggatgccg
     3361 agcgccgcat cgcctcgcag atgccgcagg aggagaaact gcgctacgcc gatttcacga
     3421 tagacacctc cggcgactac gaagagacgc gccggcagac cgaagaggtt tacctgaagc
     3481 tgcgcgacct ggcggaagcc cggaaggctc aaagatgagg gggagaggag ttttaaaccc
     3541 gaagggccgc ggggggcgac ataagagggt cgccgccggc ccgggcatga aagctttgct
     3601 gtctctggcc ctcgcgtcgt cgcttctgac gggcggctgt ttcgagagcg agaggggcga
     3661 gcgcttctac ggccgcgccg tcgcgccgtc cgagcaggtc ttccgatgga gcgacggcgg
     3721 gctgccgagc gtcttcgacc ctgcgcgcgc cgccgccccg cccgacacag acgccgtgcg
     3781 cgccctcttc gaggggctca ccgactacga gcccgcgacg ctccgccccg tgccttcggt
     3841 cgcgagccgc tgggagccgt ccgagggcgg gcgcgtgtgg gtcttccacc tgcgccgcga
     3901 cgcgcgctgg tcgaacggcg acgccgtgac ggcgggcgac ttcgtgcgct cctggcagcg
     3961 ctcgctacgc ctcggcgagg gctcgccgca ctcgaagctt ctcgccaaca ttgagggggc
     4021 gcgtgccttc gcgccgccgc ggccgaacgg ggaagagaca gtcccgggcg ccgaagagca
     4081 gcagccggcc gcagtagccc cgcccttcgg cgccgtcgcg ctcgacgcgc acacgctgcg
     4141 cgtccggctc gaacggcccg acaggaactt ccccgcgctc gtcgcccaca cggtcttccg
     4201 ccccgtccac gagcttagcc ccggcgcaga cctcccggcc ctgcgagagg agcaggagca
     4261 gccgggcgca gccgggggcg tcacggggct cgtgacgaac ggcgcgttca gcctgtcgaa
     4321 gctcggcggg gacagcgtcg tgctagagcg cgcgaagaac tattgggacg ccgcatccgt
     4381 aagcctcgag cgcgttcact tcgttgacaa gggcgacacg gagtctgcgc tcgcagccta
     4441 ccgcgcggga gaggttgacg ccgtgacgaa ctccaccttc gagccgctcg ccgtaaaact
     4501 cctcactccc tacgaggact tcaggcgcga gaccttcggc gcgctcaact actaccgctt
     4561 caacaccgcg cgcccgccct tcgacgaccg gcgcgtgcgc gaggcgctca ctctcgcgct
     4621 cgacctcgaa cgcttgagcg cggacacgct cggcggcgcg accgagcccg cgcgccgctt
     4681 tctgcccggt gcctctgaag cagaccttcc gaacagcgaa gctctcatcg gccagaacgc
     4741 cgagcgcgcg cgcacgctcc ttgcggaggc gggcttcccc ggcggcgaga acttcccgcg
     4801 cgtgcgcctg ctcgtcaacc gcaacgagca gcagcggctc atcgcgcaga cggtcgcgcg
     4861 catgtggcgc tctgcgctcg gcatcgaggc cgaagtcatc gtcaaggact gggaggaata
     4921 cgaggccatg ctgcgcgcgg gcgacttcga cgtggcgcgc cgcagcatcg tccttcagac
     4981 gaccgacgaa gagacgaaca tgctcgccct gttcggcgac cccgtcccta cttctgcgga
     5041 cgacgacgag gccgccgccg gcgcttcgcc ctcccccacg tcgcctgcca cgcccgccga
     5101 gcctggcgcc gccccgagtg agtcgccggc cgaccccgcc cgccgcccgc ccatcctgac
     5161 cgaagaagag gcgctcaggg agctgcccgc aatccccctc tacttcgcct cgtcctacgc
     5221 gctggtaaaa ccctacgtcg aggggttcga gcccaacctg ctggacgcac actcgctcaa
     5281 gcgcgtgcgc ctgaacaccg cctggaagcc gccggaggga gcgaaccagt cccgctcggc
     5341 gcgagtcttc acgccctgaa gcgccaaaat atcccgcagt tgtaaaaatc acgggcggcg
     5401 agcaacgggg ctcgcagcgc gcggcatcgc tgcttcaaag cggcgtgcca gtaag
//
LOCUS       DASPKR010000680         4921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1405033, whole genome shotgun sequence.
ACCESSION   DASPKR010000680 DASPKR010000000
VERSION     DASPKR010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4921)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4921
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1405033"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..383
                     /locus_tag="VD968_18005"
     CDS             <1..383
                     /locus_tag="VD968_18005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16338.1"
                     /translation="TRPPRSPNPCAACTRCGAAAARSPPRSPNPSGGAAGRSDSTRLL
                     AAIAQHPHELGVGVDENTAVVVEGHTLEVIGHGSVTIVDAGGMSFTNLNEAERHELLA
                     ICGVRIHVLPAGYRFDLQSRAPLV"
     gene            578..1459
                     /locus_tag="VD968_18010"
     CDS             578..1459
                     /locus_tag="VD968_18010"
                     /EC_number="3.4.15.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR02069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009057 - macromolecule catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycinase"
                     /protein_id="HYE16339.1"
                     /translation="MELTEARGRLFAVGGGDIRKGDAPLLKAFVRLARGAKARVVVMT
                     VATDDPEKAAGEYVPCFKELGVDDVCAVDVSSRSDAEGERSLEMIENATGLFFTGGDQ
                     LHITSLLGGTEMQKLIHRRYGRGLTIGGTSAGAAMMSNSMIVGGAPDSSPRAECVQIG
                     PGMDLLAGAIIDTHFSQRGRFGRLLTAVAHYPQELGLGIDEETAIIVNRDELEVMGEG
                     AVTVIDAGAMTYTSLPYAEKEETLSLFGVSVHVLSHGERFDLSERRPVIEDEGARKRR
                     RPAESGKTGTGKKGKGR"
     gene            1460..4231
                     /gene="cphA"
                     /locus_tag="VD968_18015"
     CDS             1460..4231
                     /gene="cphA"
                     /locus_tag="VD968_18015"
                     /EC_number="6.3.2.29"
                     /EC_number="6.3.2.30"
                     /inference="COORDINATES: protein motif:HMM:NF010623.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0051235 - maintenance of location [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HYE16340.1"
                     /translation="MRIEHVRTLAGPNIYTHRPALLMRLDLEDLAGRESHEVEGFVER
                     LMSLLPGLAEHFCSKGRPGGFLERLREGTYFGHTVEHVALELTALAGVGATHGKTRSA
                     GEPRVYNVVVEFKAEHATRFLLGRAVALVEALVRGEEFPLAETIAEARRLVARLELGP
                     STRAIVEAASRRNIPWERVGAGSLVRLGWGRHRRFIQAATTDATSAVAAEVASDKELT
                     KRLLEQASIPVPRGRVVSTEEGAVAALHELGGAVVVKPLDGRQGQGVSLDLKSPEEVR
                     RAFRTAREFSREVIVEELYRGRNYRVLVINYRFVAASEREPCRVEGDGRSTIAELIER
                     ENQNPLRGEGHEKPLTKIKVDDLMLAHLERAGLGLESVPAGGEVVYLRDGINLSTGGT
                     ARDVTDLAHECVRDMCERAARAVGLDICGVDLVLEDIASPPGRGNSGGVIELNASPGL
                     RMHLRPSEGEPRDVGAAILDALIPEGDGRVPLFSVTGTNGKTTVTRMIAHVLSASGLR
                     VGMTTTDGIWIGGRRVAEGDTTGPQSARTVLSDPTVDAAVLETARGGITRRGLGYDWS
                     DVAVMTNIQPDHFGQDGIETLEDLVFVKSLVAERVREGGTLVLNADDEHLARLMELPR
                     VRRVEKRVVYFSTRESHVAVRRHLDAGGAAFFVRDGWVVEAAGRDERRRLLEVAAVPA
                     TLGGAAEFQVANVLACVAACRAHGVAPSVIAAALATFDSAANPGRTNLFRLPAGGYVM
                     LDYGHNPEAFAAVCRTAARWHGRRVTGIVGVPGDRSDALIEEAGRAAARGFNRIVVKE
                     DEDTRGRRRGEVASLLCRAVAAEAPGLECRVCLDEPEALRGELRRLGPDDVVVVFYDK
                     LAPLLRVLEEFGATPTAGIEGIAQREPALAAAAFLPADTQTAPLVGVREPARPRTHAP
                     QDWHGYVWR"
     gene            4251..>4921
                     /locus_tag="VD968_18020"
     CDS             4251..>4921
                     /locus_tag="VD968_18020"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF017864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HYE16341.1"
                     /translation="MTKALGQMTGATAAGEPLVEVTRGGVVESVHRGHAVAVEGDGRI
                     VARLGSTEAVAFVRSAAKPHQALPLVASGAADRFGLSPAELAVACGSHNGEPVHTAAV
                     LSVLSKIGLDASALKCGAQEPYGKEAAAALRERGERPSALHNNCSGKHAALLALARHL
                     GAPTASYDRPDSPVQRAVFRSVSLFSGVPVEQLTYGVDGCGLPTFALSVRTMALMLAR
                     FVAPP"
BASE COUNT          756 a         1746 c         1722 g          697 t
ORIGIN      
        1 ttacgcggcc gccgcgctcg cccaacccct gcgcggcatg cacgcgatgc ggggcggcgg
       61 cggcgcgctc gcctccgcgc tcgccgaatc catcaggcgg agcggcggga cggtccgact
      121 caacacgact gctcgccgcc atcgcgcagc acccccacga gctgggcgtc ggcgttgacg
      181 agaacacggc cgttgtcgta gagggccaca cgctcgaggt cataggccac ggctctgtga
      241 cgattgttga tgcgggcggc atgagcttca ccaacctcaa cgaggccgag cgccacgagc
      301 tgctcgccat ctgcggcgtc cgcatacacg tcctcccggc cggctaccgc ttcgacctac
      361 agtcccgcgc ccccctcgtc tgacccgccg ggtttgttgc cctcgtgtta catctcgccg
      421 cgcccgcgcg ccactgtctg ctaaggtaca gaccagaaaa actgcgtaat ataaacacac
      481 aaaagtcaaa gcccccgtgt agcatccgct tccccctgga gcgcggccgc cccgagccgc
      541 gcgtcacgtt caccgttgct tcccccggcc cgagcttatg gaactgaccg aggcacgcgg
      601 gagactcttc gccgtcggcg gcggcgacat acgcaaaggc gacgcgccgc tgctcaaggc
      661 cttcgtgcgg ctcgcgcgcg gcgcgaaggc gcgcgtcgta gtgatgacgg tcgccacgga
      721 cgaccccgag aaggcggccg gcgagtacgt gccctgcttc aaggagctgg gcgttgacga
      781 cgtgtgcgcc gttgacgtgt cgtcccgctc cgacgcagag ggcgagcggt cgctcgaaat
      841 gatcgagaac gccaccggcc tcttcttcac cggcggcgac cagctacaca taacgagcct
      901 gctcgggggg accgagatgc agaagctcat acaccgccgc tacgggcgcg gcctcaccat
      961 cggcggcacg agcgcgggcg ccgcgatgat gtcgaactcg atgatagtcg gcggcgcgcc
     1021 cgactccagc ccgcgcgccg agtgcgtgca gatagggccg ggcatggact tgctcgccgg
     1081 cgctatcatt gacacccact tctcgcagcg cggccgcttc ggccgtctgc tcacggccgt
     1141 cgcccactac ccgcaggagt tgggcctcgg catagacgaa gagacggcga ttattgtcaa
     1201 cagggacgag ctcgaggtga tgggcgaggg cgccgtcacc gtcattgacg cgggcgcgat
     1261 gacctacacg agcctgcctt acgccgagaa ggaggagacc ctctcgctct tcggcgtgag
     1321 cgtccacgtg ctctcccacg gggagcggtt cgacctctcc gagcgcaggc ccgtcatcga
     1381 ggacgagggc gcgaggaaga ggaggcgccc ggcggagtca ggcaagaccg gaactgggaa
     1441 gaagggcaag gggagataga tgagaatcga gcacgtgcgg acgctcgcgg ggccgaacat
     1501 ttacacgcac aggccggcgc tgctgatgcg ccttgacctc gaagacctcg ccgggcgcga
     1561 gagccacgag gtcgagggct tcgtcgagcg gcttatgagt cttctgcccg gcctggccga
     1621 gcacttctgc tcgaaggggc ggccgggcgg cttcctcgaa cgcctgcgcg aggggactta
     1681 cttcggccac acggtcgagc acgtagcgct ggagctgact gcgctcgcgg gcgtgggcgc
     1741 cacgcacggc aagacgcgct cggccggcga gccgcgcgtc tataacgtcg tcgtcgagtt
     1801 caaggccgag cacgccacgc gcttcctcct cgggcgcgcc gtcgccttgg tggaagcgct
     1861 cgtgcgcggc gaagagttcc cgctcgccga gacgatagcc gaggcccgcc gcctggtcgc
     1921 gcgcctggaa ctggggccga gcacccgcgc catcgtcgag gcggcctcgc gccgcaacat
     1981 cccgtgggag cgcgtcggcg cgggcagcct ggtgcgtctg ggctggggcc ggcaccgccg
     2041 cttcatacag gccgcgacga cggacgcgac cagcgccgtg gcggccgagg tcgcgagcga
     2101 caaggagttg acgaagcggc tgctcgaaca ggcttcgata cccgtgccgc gcgggcgcgt
     2161 cgtctcgacg gaagaggggg ccgtcgcggc cctccacgag ttggggggcg cggtcgtcgt
     2221 caagcccctg gacgggcggc agggccaggg ggtctcgctc gatttgaagt cgccggaaga
     2281 agtccgccgc gccttccgaa ccgcgcggga gttctctcgc gaagtgatag tcgaagagct
     2341 ctaccgcggg cgcaactacc gcgttctcgt cataaactac cgcttcgtgg ccgcgagcga
     2401 gcgcgagccg tgccgcgtgg agggcgacgg ccgctcgacc atcgcggagc ttatcgagcg
     2461 cgagaaccag aaccccctcc gcggcgaggg ccacgagaaa ccgctcacga aaatcaaggt
     2521 tgacgaccta atgctcgcgc acctcgaaag ggccgggctc ggcctcgaaa gtgtccccgc
     2581 cggcggcgag gtcgtgtatc tgcgcgacgg gataaacctc tcgacgggcg ggacggctcg
     2641 cgacgtgacc gacctcgcgc acgagtgcgt gcgcgatatg tgcgagcgcg cggcgcgcgc
     2701 agtcggcctg gacatctgcg gcgttgacct cgtgctcgaa gacatagcct cgccgccggg
     2761 caggggcaac agcggcggcg tcattgagct caacgcctcg ccggggctcc gaatgcacct
     2821 gcgcccgagc gagggcgagc cgcgcgacgt gggcgcggcc atactcgacg cgctcatccc
     2881 ggagggcgac gggcgcgtgc ctctcttctc cgtcacgggg acgaacggca agacgaccgt
     2941 gacgcgcatg atcgcgcacg tcctttcggc ctcgggcctg cgcgtcggca tgacgacgac
     3001 cgacggcatc tggatcggcg gccgccgcgt cgcggagggc gacacgacgg ggccgcagtc
     3061 ggcccgcaca gttctctcag acccgacggt ggatgctgcc gttttggaga cggcgcgcgg
     3121 cggcataacg cgccggggcc tgggctacga ctggtctgac gtggccgtga tgacgaacat
     3181 acaacccgac cacttcgggc aggacggcat agagacgctc gaagacctcg tcttcgtcaa
     3241 gtcgctcgta gccgagcgcg tgcgcgaggg cggcacgctc gtcctaaacg ccgacgacga
     3301 gcacctcgcg cggctcatgg aactgccgcg cgtgcgccgc gtggagaagc gcgtcgttta
     3361 tttctccacg cgcgagagcc acgtggcggt ccgcaggcat ctcgacgcgg gcggcgccgc
     3421 cttcttcgtg cgcgacggct gggtcgtgga ggcggcgggc cgcgacgagc gccggcgcct
     3481 gctcgaagtc gcggccgtcc ccgcgactct cggcggcgcg gccgagttcc aggtcgctaa
     3541 cgtgctcgcg tgcgtcgccg cctgccgcgc tcacggcgtc gcgccctcgg tgatagccgc
     3601 ggcgctcgcg accttcgaca gcgccgcgaa ccccggccgc acgaacctct tccgactgcc
     3661 tgcgggcggc tacgtcatgc tcgactacgg ccacaacccc gaggcgttcg ccgccgtctg
     3721 ccgcacggcc gcgcgctggc acggccgccg cgtgaccggg atagtcggcg tccccggcga
     3781 ccgctccgac gcgctcatag aggaggccgg ccgcgccgcc gcgcgcggct tcaatcgcat
     3841 cgtcgtcaag gaggacgagg acacccgcgg gcgcaggcgg ggcgaggtcg caagcctcct
     3901 gtgccgcgcc gtcgcggccg aggcgccggg gctcgagtgc cgcgtctgcc tcgacgagcc
     3961 ggaggcgctg cgcggcgagc tgcgaaggct cggccccgac gacgtggtcg tggtcttcta
     4021 cgacaagctc gcgccgctac tcagagtgct cgaagagttc ggcgccaccc ccacggccgg
     4081 gatagagggc atcgcgcagc gcgagccggc gctggcggcc gcggcgttcc tcccggccga
     4141 cacgcagacc gcgccgctag tcggcgtgcg cgagcccgcc cgcccacgca cgcacgcccc
     4201 gcaggactgg cacggctacg tctggcgctg agccttataa attttgctcg atgacgaaag
     4261 cgcttgggca gatgacggga gcgacggccg cgggtgagcc tctcgtagaa gtgacgcgcg
     4321 gcggcgtggt cgagtccgtc cacaggggcc acgccgtcgc ggtcgagggc gacgggcgaa
     4381 tagtcgcgcg cctgggctcg accgaggcgg tcgccttcgt gcgctcggcc gcgaagccgc
     4441 accaggctct ccccttagtc gcgtccggcg ctgccgacag gttcggcctg agcccggccg
     4501 agctggcagt cgcctgcggc tcgcacaacg gagagccggt tcacacggcg gccgtcctct
     4561 ccgtgctctc gaagatcggc ctcgacgctt ccgccttaaa atgcggcgcg caggagccct
     4621 acgggaagga ggcggccgcc gcgctgcgcg agcggggcga gcgcccgtcg gccctccaca
     4681 acaactgctc cggcaagcac gccgctctgc tcgctctggc gcgacacctc ggcgccccaa
     4741 ctgcctctta cgaccggcca gacagccccg tccagcgcgc ggtcttccgc tccgtctcgc
     4801 tgttctccgg cgtccccgtc gaacagctca cttacggcgt tgacggctgc ggcctgccga
     4861 ccttcgcgct ttcagtccgc acgatggcgc tcatgctggc gcgcttcgtc gcgccgccgg
     4921 a
//
LOCUS       DASPKR010000681         4852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1924043, whole genome shotgun sequence.
ACCESSION   DASPKR010000681 DASPKR010000000
VERSION     DASPKR010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4852)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4852
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1924043"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3674)
                     /locus_tag="VD968_18025"
     CDS             complement(<1..3674)
                     /locus_tag="VD968_18025"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE16342.1"
                     /translation="MAQNLSVERDGADTNDTPNGNANNPDFKLGIEGFTYGDLYRPDR
                     LRELTRRFHEDVRAADPGLQARLADYTASRGEGLKGTKAESDLLLAAAPYLSRFVARL
                     FGVGAEREALASEIQSQDPVFQFKQFVQRRATKSFPAEHAAAVDVEAADRALELLRAA
                     AFADTLADDRELRVARVAARLLEWEKNYGKEGARREGGWSDERAREIRAARSRVEGTE
                     AARALASLAPADDEDADRAFVRASIRLLEAWAAAHALRPEARERVRSWVSFRTPHPLN
                     YENLVQIERPDAALPELMKGLDKNLRRRDGFKLTDARYTQREVLEEVNYCLYCHERDK
                     DSCSKGLRERDGSVKRNPLGIKLEGCPLDEKISEMHLMQKEGDSIAALALVMIDNPMC
                     PGTGHRICNDCMKSCIFQKQEPVNIPQAETGVLTGVLGLPFGFEIYSLLTRWNPLNAK
                     RPHALPYNGKNVLVVGLGPAGYTLAQFLLNEGFGVVGVDGLKIEPLSEDLTGDGGRRV
                     PLAVREVREIEDELDRRVLAGFGGVSEYGITVRWDKNFLTHMHLALARRDHFRFYGGV
                     RFGGTLTIEDAWQLGFDHIAVATGAGKPTVVQMKNNLIRGIRKASDFLMALQLTGAAK
                     RDSMANLQVRLPAIVIGGGLTAIDTATELFAYYPVQVEKILDRHEKLVAEFGEEEVWK
                     RFDAEERSTLEEFLAHGRAVRAERERAARAGEAPDFVPLVRGWGGVTIVYRKRVLDSP
                     AYRLNHEEIAKSLEEGISIVENMSPVEAVPDENGAVSAVVFERMARDPETGKWRATGE
                     AVRFAARTVCVAAGTSPNTIYERERPGTFALDEWREFFSPHKVERGGDGARRLVPAAK
                     GEGAFFTSYENGGRFITYYGDNHPVYAGNVVKAMASAKDGYEHVVNLFSEELAALGEE
                     DQPARERAFGRLVETLDSELVARVVRVDRLTPTIVDVIVRAPMQARKFHPGQFYRLQN
                     YETDAVMVDGTKLTMEGLALTGAWVDKDAGLLSLIVLEMGASSRQCAHLRPGQQVVVM
                     GPTGTPTEIPEGETVLLAGGGLGNAVLFSIAKALRERGNRVIYFAGYKNGEDLFKREE
                     IEEATDQVIWSTDAGGEIEPRRPQDRHFRGNIVQCMKAYAEGQLGGPPFFDLRDVDRI
                     IAIGSDRMMAAVKAARHGVLAPYLKPGHVGVGSINSPMQCMMKEVCAQCLQRHVDPET
                     GAESSSSPASIRTSCSTRLIS"
     gene            3928..4001
                     /locus_tag="VD968_18030"
     tRNA            3928..4001
                     /locus_tag="VD968_18030"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3962..3964,aa:Glu,seq:ctc)
     gene            4146..>4852
                     /locus_tag="VD968_18035"
     CDS             4146..>4852
                     /locus_tag="VD968_18035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16343.1"
                     /translation="MLLDESNRKLVSHVQKALGALVGPLGESIRQVWRGGGAPEPKAV
                     LDNHLTLMAQRFIDLREASESEKQRYYEDVCTLFLLPAAPDTFPLRQSNDIPPHLIKR
                     LDRTPVVVSYLETYDSRHGTNHADRARHALFEFANLVIKSDGRISEVERYALAEFKDA
                     LFPAGQRPPGGVPGAPPGAKDPATAGESEEAPELGLPRPLEELMAELDALVGLERVKR
                     DVRDLINFLKVQKMREE"
BASE COUNT          746 a         1613 c         1670 g          823 t
ORIGIN      
        1 gaaatcaacc tcgtcgagca gctggtcctg attgaagcag gagaagacga agattcggcg
       61 ccggtctccg ggtcaacgtg gcgctggagg cattgcgcgc agacctcctt catcatgcat
      121 tgcatcgggc tgttgatgga gccgacgccg acgtggcccg gcttcagata cggcgcgagc
      181 acgccgtggc gcgccgcctt gacggcagcc atcatgcggt cggagccgat ggcgatgatg
      241 cggtcaacgt cgcgcaggtc gaagaacggc gggccgccca actgcccttc ggcgtaagcc
      301 ttcatgcact gcacgatgtt gccgcggaag tgcctgtcct gcggacggcg cggctctatc
      361 tcgccgcccg cgtcggttga ccagatgacc tggtcggtcg cctcctctat ctcctcgcgc
      421 ttgaagaggt cttcgccgtt cttgtagccg gcgaagtata tgacgcggtt gccgcgctcg
      481 cgcagcgcct tcgcgatgga gaagagtacg gcgttgccga ggccgccgcc cgcgagcagc
      541 accgtctcgc cctcgggtat ctcggtcggc gtgcccgtcg gccccatcac gacgacctgc
      601 tggcccggcc gaaggtgcgc gcactggcgc gacgatgcgc ccatctcaag gacgatgagg
      661 ctcaggaggc ccgcgtcctt gtccacccac gcgcccgtca aggccaagcc ctccatcgtg
      721 agcttcgtgc cgtcaaccat gacggcgtcg gtctcgtagt tctggaggcg gtagaactgg
      781 ccggggtgga acttgcgggc ctgcatcggc gcgcgcacga tcacgtcaac aatcgtaggc
      841 gtcaggcggt caactcttac gacgcgcgcg accagctcgg agtcgagcgt ctcgaccagc
      901 cgcccgaagg cgcgctcgcg cgcgggctgg tcttcctcgc cgagcgccgc aagctcctcc
      961 gagaagaggt tgacgacgtg ctcgtagccg tccttcgcgg acgccatcgc cttgacgacg
     1021 ttgccggcat agacggggtg gttgtcgccg tagtaggtga tgaagcggcc gccgttctcg
     1081 taggaggtga agaaggcgcc ctcgcccttc gcggccggca cgagccggcg ggcgccatcg
     1141 ccgccgcgct cgaccttgtg cggcgagaag aactcgcgcc actcgtcgag ggcgaaggtt
     1201 ccgggccgct cgcgctcgta gatggtgttg gggctcgtgc cggcggcgac gcagaccgtg
     1261 cgggcggcga agcgcaccgc ctcgcccgtc gctcgccact tgcctgtctc ggggtcgcgc
     1321 gccattcgct cgaagacgac cgccgagacg gcgccgttct cgtcggggac ggcctcgacg
     1381 ggcgacatgt tctccacaat cgagatgccc tcctcgagcg acttggctat ctcctcgtgg
     1441 tttaggcggt aggcgggcga gtcgagcacg cgcttgcgat agacgatcgt cacccctccc
     1501 cagccgcgca cgagcggcac gaagtcgggc gcctctccgg cgcgcgcggc gcgctcgcgc
     1561 tcggcgcgga cggcccggcc gtgcgcgagg aactcttcga gcgtcgagcg ctcctcggcg
     1621 tcgaaccgct tccagacctc ttcctcgccg aactcggcga cgagcttttc gtggcggtcg
     1681 aggattttct cgacctggac ggggtagtag gcgaaaagct ccgtggccgt gtctatcgcg
     1741 gtcaggccgc cgccgattac gatggccggc aggcgcacct gaaggttagc catagagtcg
     1801 cgcttggcgg cgcccgtcaa ctgcaaggcc atcaggaagt ccgacgcctt gcgtatgccg
     1861 cgtatgaggt tgttcttcat ctggactacg gtgggctttc cggcgcccgt ggctacggct
     1921 atgtggtcga agccgagctg ccaggcgtcc tctatggtga gcgtgcctcc gaagcgcacg
     1981 ccgccgtaga agcggaagtg gtcgcggcgc gcgagcgcga ggtgcatgtg cgtgaggaag
     2041 ttcttatccc accgcacggt gatgccgtac tcggagacgc cgccgaagcc ggcgagcacg
     2101 cggcggtcta attcgtcctc tatctcgcgc acctcgcgca cggcgagcgg cacgcgccgg
     2161 ccgccgtcgc ccgtcaggtc ttcgctcagg ggctcaatct ttaagccgtc aacgccgacg
     2221 acgccgaagc cttcgttgag gaggaactgc gcgagcgtgt agccagccgg gccgaggccg
     2281 acgacgagga cgttcttgcc gttgtagggg agcgcgtgcg ggcgcttggc gttcaggggg
     2341 ttccagcgcg tcaagagcga gtagatttca aacccgaagg ggaggccgag cacgccggtg
     2401 agcacgcccg tctcggcctg cgggatgttg accggctcct gcttctggaa tatgcacgac
     2461 ttcatgcagt cgttgcagat gcggtggccc gtgcccgggc acatcgggtt gtctatcatc
     2521 acgagcgcga gcgccgctat cgagtcgccc tccttctgca tcaggtgcat ctcggaaatc
     2581 ttctcgtcga gcgggcagcc ctcgagcttg atgccgagcg ggttgcgctt gaccgagccg
     2641 tcgcgctcgc gcaggccctt cgagcaagag tccttgtcgc gctcgtggca gtagaggcag
     2701 tagttgacct cttcgagcac ctcgcgctgc gtgtagcgcg cgtccgtgag cttgaagccg
     2761 tcgcggcggc gcagattttt atcgagcccc ttcatcaact cggggagcgc cgcgtcgggc
     2821 cgctctatct gcacgaggtt ctcgtagttg agtgggtgcg gcgttcggaa tgagacccaa
     2881 gatcgcacgc gctcgcgcgc ttcgggcctg agggcgtggg ccgcggccca ggcttcgagc
     2941 agccgtatgg aggcgcgcac gaaggcccgg tcagcgtctt cgtcgtctgc gggcgcgagc
     3001 gaggcgagcg cgcgggcggc ctcagtcccc tcgacgcgcg agcgcgccgc gcgtatctcc
     3061 cgcgctcgct cgtcgctcca cccgccctca cggcgcgcgc cctccttgcc gtagttcttc
     3121 tcccactcga gcagccgcgc tgcgacgcgc gcaaccctaa gctcgcggtc gtcggcgagc
     3181 gtatccgcga aggccgcggc gcgcaggagc tcgagcgcgc ggtcggccgc ctcaacgtcc
     3241 acggcggccg cgtgctcggc cgggaagctc ttggtcgcgc gccgctgaac gaactgcttg
     3301 aattggaaga cggggtcttg cgactgaatc tcggaggcga gcgcctcgcg ctcggccccg
     3361 acgccgaaca gccgcgcgac gaagcgcgag aggtagggcg ccgccgcgag cagaaggtcg
     3421 gattcggcct tcgtcccctt cagcccctcg ccgcgcgagg ccgtgtagtc tgcgagccgc
     3481 gcctgaagcc cggggtcggc ggcgcgcacg tcctcgtgga acctgcgcgt aagctcgcgc
     3541 agccggtcgg ggcggtagag gtctccgtag gtgaagccct ctatgccgag tttgaagtct
     3601 gggttgttag cgttgccgtt cggcgtgtcg ttcgtgtcgg cgccgtcgcg ttcgacggag
     3661 agattctgtg ccattcgagt caagggcctt ctgaattact ttcgcaggac gggagcgggt
     3721 gccaagagcc gcctcgcagg gagatgcgcg cgacgcggcg agtatatcac cgccgacgcc
     3781 ctgccccgaa agacgtgcgc cggccgcgcg cgatcatcca cggcgactgc ccgcgagccg
     3841 tgcgattcgc gtcacacggc cccctgccgc cgcggccggt cacacttgcc atttaagccg
     3901 gcctgccttt ataatctacg cgtttttggc gcattggtgt agtcggctaa cacgccgccc
     3961 tctcaaggcg gagaccacgg gttcgagtcc cgtatgcgct acttgggtca gaaaacggag
     4021 gccaccgcgc aggtggcctt ttccatttgc ggggcgcaag ggcgcgtcac aggccgcggg
     4081 cgggcaggtg gtataatcgc gcccgcggat agggtctgac cagcctggga ggagtcgcgg
     4141 ggcgggtgct gctggacgag agcaacagga agcttgtgtc gcacgtgcag aaggcgctgg
     4201 gggcgctggt cgggcctttg ggcgagagca tccggcaggt ctggcgcgga ggcggcgcgc
     4261 ccgagccgaa ggcggtgctc gacaaccatc tgacgctcat ggcgcagcgt ttcatagacc
     4321 tgcgcgaggc gagcgagtcg gagaagcagc gctactacga agacgtgtgc acgctcttcc
     4381 tcctgccggc cgcgcctgac accttcccgc tgcgacagtc gaacgacatc ccgccccacc
     4441 tgatcaagcg cctcgaccgc acgcccgtcg tcgtctccta cctggaaact tacgactcgc
     4501 gccacggcac gaaccacgcc gaccgcgcgc gccacgccct cttcgagttc gccaacctcg
     4561 tcataaagtc cgacggccgc atctcggagg ttgagcgcta cgcgcttgcc gagttcaagg
     4621 acgcgctctt ccccgcgggc cagagacctc cgggcggagt gccgggcgcg ccgcccggag
     4681 ctaaagaccc agcgacggcg ggagaaagtg aagaggcgcc ggagctcggg ctgccgcgcc
     4741 cgctagaaga gctaatggca gagctcgacg cgctcgtcgg gctcgagcgc gtcaagcggg
     4801 acgtgcgcga cctcataaac ttcctcaagg ttcagaagat gcgcgaggag ca
//
LOCUS       DASPKR010000682         4006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_239022, whole genome shotgun sequence.
ACCESSION   DASPKR010000682 DASPKR010000000
VERSION     DASPKR010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4006)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4006
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239022"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..576)
                     /locus_tag="VD968_18040"
     CDS             complement(<1..576)
                     /locus_tag="VD968_18040"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE16344.1"
                     /translation="MANILIVDDEPGMRQLLSLVFGRSGHSVRAAEGGAKAIEMLRRE
                     PADLIVSDVKMPDMTGIELLRKAREFLPDAAVIMMTAFATVETAREAFKLGADDFIQK
                     PFDVDELKLIVEKALERLRLLQENRAFKRAQRDRGRLDQIIGHSAKMQAVYQMIETVA
                     AVQSTVLITGESGTGKEMVARAIHNLSPRSDK"
     gene            complement(612..2297)
                     /locus_tag="VD968_18045"
     CDS             complement(612..2297)
                     /locus_tag="VD968_18045"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE16345.1"
                     /translation="MSASVERAGEMASAGPQRRWLWWLVAGRVAVAFMLLGASSLWVG
                     GVSAGRSAGALPLALLVLGLSVLYALALRFTRLPLSAQAGAQFALDVLLITRLVWVTG
                     NVYSPYSALFIVVIAAASVFLGARGALLTSVGCAASYTGTMLLLVAGMAGPRAGEASA
                     ASVAEAVQVIGMNDIAFLVVGLLAAQLAERQTRSEFQMMEATHALASLRALHERIVES
                     IRSGVITTDLERRIYTVNAAAEEMTGHTAEGLRGQDVSILFGDIREQIKSSLRAAEAG
                     EASPRFEADCLTAEGFRVRLGYSVSPLSDERGHTTGLVITFQDLTDIRAMEETSRRQE
                     RLSALGRVAAGIAHEIRNPLAAMRGSIQVLRSEISADPSQAELMEIVLRESDRLNRII
                     TDFLTYARPRQVSLVETDLREPLMETFALLRHSPEVADGHRLEDVLPDRPLVAMADAE
                     GIKQVFWNLSRNALKAMPGGGTLRAEMSSPKEGVIRTVFSDTGGGMSPSQVERLFEPF
                     SSSTTGGTGLGLSIVYQIIRDHGGTINVRSREGHGTTITIELPAATQRPVKGF"
     gene            2482..3969
                     /locus_tag="VD968_18050"
     CDS             2482..3969
                     /locus_tag="VD968_18050"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: protein motif:HMM:TIGR02037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HYE16346.1"
                     /translation="MILSSERRPARRLGVLLSAVLAVVLGAVAAGAQTPAAEQVGAQA
                     PRTYATNSYAAVVSRAAPAVVTVRSQRRVTASEQRIPFLDDPTLREFFGDRLPQGRQV
                     PRPERQRGLGSGVIVSPDGYILTNHHVVEGAEQITIELTDRRTLSAKLVGSDPPSDLA
                     VLKVDVAGLPSLPLGDSDRVQVGDVVLAIGNPLGIGQTVTSGIISAKGRQTGLGDGSF
                     EDFLQTDAAINRGNSGGALISADGELIGINSQILSPSGGSIGIGFAIPSNMARDVMSQ
                     LVKSGRVRRGMVGVTIQPVTADIAASLDIGQPRGALVSSVMPGGPAERAGLRRGDIIV
                     AVNNAPVADSNTFRNTVARMQPGTPASVTVLRDGREQQFRLTLGELPAETSRGGREGE
                     GDDPGEAEGGRLGVTVEPLTPEAAARLELPRDTRGLAITGVNSDGPAAEAGLRRGDVI
                     QEVNRQPVRTAEELRAALDRAGTRPALLLVTNERGTGYVTVRPRR"
BASE COUNT          660 a         1392 c         1368 g          586 t
ORIGIN      
        1 cttgtcggag cgcggggaga ggttgtgtat ggcgcgcgcg accatctcct tgccggtgcc
       61 ggactcgcca gtgatgagca cagttgactg cacggcggcc accgtctcga tcatctgata
      121 gacggcctgc atcttggccg agtggccgat tatctggtcg aggcggccgc ggtcgcgctg
      181 cgcgcgcttg aaggcgcggt tctcctgcaa gagccgaagc cgctcgagcg ccttctcgac
      241 aatcagcttc agctcgtcaa cgtcgaaggg cttctgtata aagtcgtctg cgccgagctt
      301 gaaggcctct cgggcggtct cgactgtggc gaaggccgtc atcattatca cggccgcgtc
      361 cggcaaaaac tcgcgcgcct ttcgcagcag ctcgatgccg gtcatgtccg gcatcttcac
      421 gtccgagact atcaggtcgg ccggctcgcg acggagcatc tcaatcgctt tggcgccgcc
      481 ctcggccgcg cgcaccgagt ggccggagcg cccgaagacg agcgaaagca actgcctcat
      541 tcccggctcg tcgtcaacga tgagtatgtt agccataact cgaaaagagg tcggaagccc
      601 gaggccggag gtcagaagcc cttcaccggc ctctgagtcg ccgcgggcag ttcaatcgtg
      661 atcgtggtgc cgtggccctc gcggctccgc acgttgattg taccaccgtg gtcgcggatt
      721 atctgataga cgattgagag cccgagcccc gtcccgccgg tcgtcgagga agagaagggc
      781 tcgaacagcc gctcgacctg cgagggcgac atgccgccgc cggtgtcgga gaagaccgtg
      841 cggatgacgc cctccttcgg gctcgacatc tccgcgcgga gcgtgccgcc gccgggcatg
      901 gctttgagcg cgttccgcga gaggttccag aaaacctgct tgatgccctc ggcgtcggcc
      961 atcgcgacga gcgggcggtc gggcagaacg tcttcgaggc ggtggccgtc cgccacctcg
     1021 gggctgtgcc tgagcagagc gaaggtctcc atgagcggct cgcgcaagtc cgtctcgacg
     1081 agcgagacct ggcgcgggcg cgcataggtt aagaagtccg tgatgatgcg gttcaggcgg
     1141 tcggactccc tgagcacaat ctccatcagc tccgcctgcg aggggtctgc gctaatctcc
     1201 gagcgcagca cctgaatcga gccgcgcatc gcggcgagcg ggttgcgtat ctcgtgcgct
     1261 atacctgcgg cgacgcggcc gagcgccgac aggcgctcct gccgccgcga ggtctcctcc
     1321 atcgcgcgta tgtcggtcaa gtcctggaag gttatgacga ggccggtcgt gtggccgcgc
     1381 tcgtccgaga gcggcgagac gctgtagccg agcctgacgc ggaagccctc ggccgtgagg
     1441 cagtcggcct cgaagcgggg gctcgcctcg ccggcctcgg ccgcgcgcag cgagctcttt
     1501 atctgctccc gtatgtcgcc gaacagtatg gacacgtcct gcccgcgcag cccctcggcc
     1561 gtgtggcccg tcatctcctc ggccgcggcg ttgacggtgt agatgcggcg ctcaaggtcg
     1621 gtcgtgatca cgcccgagcg gatggattcg acgatgcgct cgtggagcgc gcggaggctc
     1681 gcgagcgcgt gcgtggcctc catcatctga aactcggagc gggtctgccg ctcggccaac
     1741 tgcgcggcga gcaggccgac gacgaggaac gcgatgtcgt tcatcccgat gacctgcacg
     1801 gcctccgcga cggacgcggc cgatgcctcg cccgcgcgcg ggccagccat gcccgccacg
     1861 agcagaagca tcgtccccgt gtagctcgcc gcgcacccga ccgaagtcaa aagcgccccg
     1921 cgcgcgccga ggaagacgct cgccgcggcg atgaccacga tgaagagcgc ggagtagggc
     1981 gaatagacgt tccccgtcac ccagacgagc cgcgtgatga gcagcacgtc taaggcgaac
     2041 tgcgcgccgg cctgcgcgct caaaggcagc cgcgtgaagc gcagcgcgag cgcgtacagg
     2101 acggagagcc cgagcacaag gagcgccagc ggcagcgccc cggccgagcg ccccgccgag
     2161 accccgccca cccagagcga gctagccccc agcagcatga aggcgacggc cacccggccc
     2221 gccacgagcc accagagcca gcgtcgctgc gggccggcag aggccatctc cccggccctc
     2281 tccacactcg cgctcatcgg ccctaagcct agcacaagcc gcgccgcggg cgccggccaa
     2341 tcatgcggaa ggcttccccg cgggctggcg cggcatctaa acgtcacgcg acggcacgga
     2401 taaaaggggt tttgacagag gctcgggccg ccgcgccttt caagctgttg agatttttca
     2461 gggtagtggg ggatttaaat gatgatttta tcgagtgaga gacgcccggc gcgccgcctg
     2521 ggcgtgcttc tttccgcggt tctcgccgtc gtgctcggcg ccgtcgcggc cggcgcgcag
     2581 acgcccgcgg ccgagcaggt cggcgcgcag gctccgagga catacgctac caactcctac
     2641 gcggcggtcg tcagccgcgc cgcgccggca gtcgtcaccg tgcgctcgca gaggcgcgtc
     2701 accgcctccg agcaacgcat accgttcctt gacgacccga ctctgcgcga gttcttcggc
     2761 gaccgcctgc cgcagggccg tcaggtgcct cggccggagc gccagcgcgg cctcggctcc
     2821 ggcgtcatcg tcagcccgga cggctacatc cttacgaacc accacgtggt cgagggcgcc
     2881 gagcagataa cgatcgagct tacagaccgc agaaccctct cggccaagct cgtcggctcc
     2941 gacccgccga gcgacctcgc ggtcctgaag gttgacgtag cggggcttcc gtcgcttcct
     3001 ctgggcgact ccgaccgcgt gcaggtcggc gacgttgtgc tcgccattgg caacccgctc
     3061 ggcataggcc agaccgtcac ctccggcatc atcagcgcga aggggcggca gacgggcttg
     3121 ggcgacggca gcttcgagga cttcctgcag acggacgcgg cgatcaatcg cggcaactcc
     3181 ggcggcgcgc tcataagcgc cgacggcgag ctcatcggca tcaactcgca gatactctct
     3241 ccttcgggcg ggagcatcgg cataggcttc gccatcccgt cgaatatggc gcgcgacgtg
     3301 atgagccagc tcgttaagag tggccgcgtg cggcgcggca tggtcggcgt gaccatccag
     3361 cccgtcacgg ccgacatcgc cgcgagcctc gacataggcc agccgcgcgg cgccctcgtg
     3421 agcagcgtga tgccaggcgg gccggcggag cgcgcgggcc tgcgccgcgg cgacatcatc
     3481 gtcgccgtca acaacgcgcc cgtcgcagac tcgaacacct tccgcaacac ggtcgcgcgc
     3541 atgcagccgg ggactccggc ctcggtcaca gtcctgcgcg acgggcgcga gcagcagttc
     3601 cgcctgacgc tcggcgagct gccggccgag acgtcgaggg gaggccgcga gggtgagggc
     3661 gacgaccccg gcgaggccga gggcggcagg ctcggcgtaa cggtcgagcc gctaacgccc
     3721 gaggcagccg cccgccttga gcttccgcgc gacacgcgcg ggctcgccat aacgggcgtc
     3781 aactcggacg ggccggccgc cgaggcgggc ctgcgccgcg gcgacgtgat tcaggaggtc
     3841 aaccgccagc ccgtccgcac cgccgaggag ctgcgcgccg cgctcgaccg cgcggggacg
     3901 cgccccgcgc tcctcctcgt caccaacgaa cgcggcaccg gctatgtcac cgtccgcccg
     3961 cgcaggtaag acggaagggg gaaaagggga aaaggcgaaa agggaa
//
LOCUS       DASPKR010000683         3384 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_498967, whole genome shotgun sequence.
ACCESSION   DASPKR010000683 DASPKR010000000
VERSION     DASPKR010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3384)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3384
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498967"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1450
                     /locus_tag="VD968_18055"
     CDS             <1..1450
                     /locus_tag="VD968_18055"
                     /inference="COORDINATES: protein motif:HMM:NF024821.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE16347.1"
                     /translation="AVVLGRRGDVAEAVKILSDVLEEHPQMHGIRPLLAQQLIKQGDT
                     EAARAQLTDKVRDAAAADHDIAYWLATAHAMLGEPDEALRWLERAIDLGNENRTWFES
                     DPNWETLRDHPRFRELMHAIEDDMRGAAERAQSFTETPDAAGATRTTTNPEAYEEYLR
                     GRDAGGRFIYHTLAREDSDEAVQHFTRAIELDPNFALAYCALGGAYANRVIKGCGGTE
                     DYERAEEAFARALALDPKLLEARLHMVFIHLARGEKAKARELAERMRRESPNDVGVQF
                     VCATLARLDGRYDDALEGFSRMLKINPAERVVVSYNRARVFMYQGRYDDALAELDLGA
                     QMEPNHPLIKTFRAVVCARRGDPEAAVRIIREVLDRHPRMHGVRPLLAQFLIRQGDTE
                     AARAQLTDKVRDAAAADHDIAYWLATAHAMLGDRDEAFEWLGRAITLGNENRLWFESD
                     PSWEGLRDDPRFPELMRRIESSQKQAGETRPQ"
     gene            1552..2370
                     /locus_tag="VD968_18060"
     CDS             1552..2370
                     /locus_tag="VD968_18060"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HYE16348.1"
                     /translation="MPVSTFVVGDVHGRRAQLRNLLSLIPRDAGRDKLVLLGDLIDRG
                     EDVPGTVSDVLELQRQSPEGLVVVLRGNHEQMLLDFLDEGAWLWLHPAVGSAETFEQY
                     AGRELTDELRSWWEEAQRRVRDALPAEHLEFFRSLPLFHEDEHAFYVHAGLDGGKHPS
                     ETDARFLLFARNPDFYKHYYGKPCVFGHTPTPLLPLLGRLGRHGIYVSHSAIGIDTGY
                     ADTSPLSCLRLPEFDLYQTFADGRSAHFRMTNFIPRPFHQFQKNGAKPAGDGHA"
     gene            2440..2904
                     /gene="bcp"
                     /locus_tag="VD968_18065"
     CDS             2440..2904
                     /gene="bcp"
                     /locus_tag="VD968_18065"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF006960.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HYE16349.1"
                     /translation="MLKEGDAAPEFAARDAGGNLVRLSDLRGRRVVLYFYPKDDTPGC
                     TKQACSLRDSHSEFGERGIKVLGVSLDDEASHRKFAEKYSLPFTLLADTDHAVAEAYG
                     VYGEKQWMGKKYMGVDRKTFLIDEQGRIKKVFDKVNVERHADEVLAAFGEGA"
     gene            complement(2976..>3384)
                     /locus_tag="VD968_18070"
     CDS             complement(2976..>3384)
                     /locus_tag="VD968_18070"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16350.1"
                     /translation="LGIAVVLFVSSVAFIGLGLMAATLPVFSPERGAEATNIFQGILL
                     LVSGIYYPVEVLPGWLQPLAHVSPATYALSACRKLIGIEGAGQGEGAPLSAVTHELLV
                     LALMGAVMVPLGFYVFALVERWAKRTGKLKRTG"
BASE COUNT          591 a         1221 c         1101 g          471 t
ORIGIN      
        1 cgccgtcgtg ctcggccgcc gcggcgacgt ggccgaggcc gtgaagattc tcagcgacgt
       61 gctcgaagag cacccgcaga tgcacggcat acggccgctc ctcgcgcagc agctaatcaa
      121 gcagggcgac acggaggcgg cgcgcgcgca gttgacggac aaggtgcgcg acgcggccgc
      181 cgcagaccac gacatcgcct actggctcgc caccgcccac gcgatgctcg gcgagcccga
      241 cgaggcgctg cgctggctcg agcgcgcgat tgacttgggc aacgagaacc gcacgtggtt
      301 cgagtcggac ccgaactggg agacgctgcg cgaccacccg cgcttccgcg agctgatgca
      361 cgccatcgag gacgacatgc gcggcgcggc cgagcgcgcg cagagcttca cggagacgcc
      421 cgacgcggcc ggcgccacgc gcacgacgac gaaccccgag gcttacgagg agtacctgcg
      481 cgggcgcgac gctggcggcc gcttcatata ccacacgctc gcgcgcgagg attcggacga
      541 ggccgtccag cacttcacgc gcgccataga gctcgacccg aacttcgcgc tcgcctactg
      601 cgcgctcggc ggcgcctacg ccaaccgcgt cataaagggg tgcggcggca ccgaagacta
      661 cgagcgcgcc gaggaggcct tcgcgcgcgc cctcgcgctc gaccccaagc tgctcgaagc
      721 ccgcctccac atggtcttca tacacctcgc gcgcggcgag aaggcgaagg cccgcgagct
      781 ggccgagcgc atgcggcgcg agtcgcccaa cgacgtgggc gtgcagttcg tctgcgccac
      841 gctggcgcgc ctcgacgggc gctacgacga cgccctcgaa ggcttcagcc ggatgctcaa
      901 gataaaccct gccgagcgcg tcgtagtcag ctacaaccgc gcccgcgtct tcatgtacca
      961 gggccgctac gacgacgcgc tcgcggagct cgacctcggc gcacagatgg agccgaacca
     1021 cccgctgata aagacgttcc gcgcggtcgt ctgcgcccgg cgcggcgacc cggaggcggc
     1081 cgtccgcatc atccgagaag tgctcgaccg ccacccgcgc atgcacggcg tgcgccccct
     1141 gctcgcgcag ttcctcatcc ggcagggcga cacggaggcg gctcgcgcgc agttgaccga
     1201 caaggtgcgc gacgctgccg ccgcagacca cgacatcgcc tactggctcg ccaccgccca
     1261 cgcgatgctc ggcgatcgcg acgaagcgtt cgagtggctc ggtcgcgcga tcacactcgg
     1321 caacgagaac aggctctggt tcgagtcaga cccgagctgg gagggcctgc gcgacgaccc
     1381 gcgcttcccg gagttgatgc gccgcataga atcttcgcag aagcaggcgg gcgaaacccg
     1441 accgcagtag cgacaagggg gagaggccaa gcagggattt tcggccttta acttccggcc
     1501 gtgacgaggg ccgggagcat gaaggccggg ggctcacttc ttcagcggag gatgcctgtg
     1561 agcaccttcg tcgtcggcga cgttcacggc cgccgcgctc agctccgtaa ccttctctcc
     1621 ttaatcccgc gcgacgcggg gcgggacaag ctcgtcctcc ttggcgacct catagaccgc
     1681 ggcgaggacg tccccggcac cgtctccgac gttttggagc ttcagcggca gtcgcccgag
     1741 gggctcgtcg tcgtgctgcg cggcaaccac gagcagatgc tcctcgactt cctcgacgaa
     1801 ggggcctggc tctggctcca ccccgccgtc ggcagcgccg agaccttcga gcagtacgct
     1861 ggccgggaac tgaccgacga gcttcgctcg tggtgggagg aggcgcagcg gcgcgtgcgc
     1921 gacgcgttgc cggccgagca cttggagttc ttccgctcgc tcccgctctt ccacgaggac
     1981 gagcacgcct tctacgtcca cgccgggctc gacggcggga agcacccgtc ggagacggac
     2041 gcgcgcttcc tcctcttcgc ccgcaacccc gacttctaca agcactacta cggcaagccc
     2101 tgcgtcttcg gccacacgcc gacgccgctc ctgccgctct tggggcggct cggccgccac
     2161 ggcatatacg tctcgcacag cgccataggc attgacaccg gctacgccga cacctcgccg
     2221 ctcagttgcc tgcgcctccc cgagttcgac ctctaccaga ccttcgccga cggccgctcc
     2281 gcgcacttcc gcatgaccaa cttcatcccg cgccccttcc accagttcca gaagaacggc
     2341 gcgaagcccg cgggcgacgg ccacgcttaa gccccgcgcc cccgcgttgt aaaatccccc
     2401 cgctctactc ctaacagaat cgagacgggg gattaacgta tgctcaaaga gggtgacgcc
     2461 gcgccggagt tcgccgcacg cgacgcgggc gggaacttgg taaggctctc agacctgcgc
     2521 ggccggaggg tcgtgctcta cttctacccg aaggacgaca cgccgggctg cacgaagcag
     2581 gcgtgctccc tgcgcgactc gcactccgag ttcggcgagc gcggcataaa ggttctcggc
     2641 gtctcgctcg acgacgaggc ttcgcaccgc aagttcgccg agaagtactc gctgcccttc
     2701 acgctcctcg cggacaccga ccacgccgtg gccgaagcct acggcgttta cggcgagaag
     2761 cagtggatgg ggaagaagta catgggcgtt gaccgcaaga ccttcctcat agacgagcag
     2821 ggcaggatca aaaaggtctt cgacaaggtc aacgtcgagc gccacgccga cgaggtgctc
     2881 gccgccttcg gcgaaggcgc ctgagagtca gaaggcgaat gaggaaaggt ccgcggggtt
     2941 agcgccccgc ggcccctccc gtctccgggg cggcctcagc ccgtccgctt aagcttgccc
     3001 gtgcgcttcg cccagcgctc taccagggcg aagacgtaga agcccagcgg caccatcacc
     3061 gcgcccatca gggcgagcac cagcagctcg tgggtgacgg ccgagagcgg cgcgccctcg
     3121 ccctgcccgg cgccctctat gcctatgagc ttgcggcagg ccgagagcgc gtaggtcgcc
     3181 ggcgagacgt gtgcgagcgg ctggagccag cccggcagaa cctccacggg gtagtagatg
     3241 ccggagacga ggagcagtat cccctggaag atgttcgtcg cctcggcgcc ccgctcgggg
     3301 ctgaagacgg gcagcgtcgc cgccatcagg cccaagccta tgaacgccac gctgctgacg
     3361 aagagcacga cggctatgcc caag
//
LOCUS       DASPKR010000684         5729 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_499063, whole genome shotgun sequence.
ACCESSION   DASPKR010000684 DASPKR010000000
VERSION     DASPKR010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5729)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5729
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499063"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VD968_18075"
     CDS             complement(<1..605)
                     /locus_tag="VD968_18075"
                     /inference="COORDINATES: protein motif:HMM:NF013126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 N-terminal
                     domain-containing protein"
                     /protein_id="HYE16351.1"
                     /translation="MASVEGKSGGKSGGESIERRAGRLLFVGLPATALDRQRREFLRE
                     VRPGGVILFGRNIESAEQVALLNAQIRDAAGRSVLIGVDQEGGLVDRFRDVCEPSPSA
                     KAVRNAGRADLAEKFGHLTARMLRLMGFNINFAPVLDLSGDNDDNGLRARTFGVAPEL
                     VSLLGGAYLDGLQRAGVAGCGKHFPGLGGSKVDSHRRLPVIT"
     gene            1048..1389
                     /locus_tag="VD968_18080"
     CDS             1048..1389
                     /locus_tag="VD968_18080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016275205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HYE16352.1"
                     /translation="MSTRLYVGNLNFNTTGEDLREHFSKAGEVESASVVEDRETGRSR
                     GFGFVEMATAEGAAAAIEMFNGKELGGRTLTVNEARPRVERGGGGYGGGGGYGGGGGR
                     GGGGGQREPRW"
     gene            complement(1469..3505)
                     /locus_tag="VD968_18085"
     CDS             complement(1469..3505)
                     /locus_tag="VD968_18085"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYE16353.1"
                     /translation="MSSSIFTKSRRALVAALAFALLAQGAFARQQPQQKAAPPPPAPE
                     AERLRAHVSHLASDRLEGRKTGTRGAQEAAEYVANEFIKLSLAPGGNTRTGPRNKVVP
                     SEYMQEFPYVAGVELGEGNSLKITEQGETQATDLRAGEDWMPLGFSSNARVEGAPLVF
                     AGFGITAAEANYDDYKAVDVKDKVALALSGSPDGDNPHGRFTRAGEIRFKAAAARGAG
                     AKALLVAAEDENFRNDKLSALSYDNAGGDAGLPVAVLSRRAVAKILGLAGAAALKDVE
                     AMARLLKTPATFFEDTADVGKKPKAAVSLSVDVVRKSAPAANVVGVLEGSDPRLKDEV
                     VVVGAHYDHLGRGGRGSLAPKEGDVHHGADDNASGTAALLELARLLSADKTKMRRTVV
                     FIAFGGEEEGLLGSSFYVNNPTLPVERTVAMLNMDMVGRLKDDSLMIGGVGTASEWRG
                     WIEEANRDFKVSVDATGSGNVRVPAADGKTASAPVIVTGSNGNVVAVATPVERFKLRL
                     NEDGFGPSDHSAFYAKRLPVLFFFTGVHEDYHKPSDTAERINYDGLARVTSFVRDIVM
                     ALQSSEKRPTFAVAKTESSARSTGFRVYLGTVPSYAESTDGLKIDAVREGSPAEAAGL
                     RAGDKIVRLAGRDVQNIYDYTQALSGMKAGQEYEVTVVRDGQRQTLKVTPAARR"
     gene            complement(3545..4633)
                     /locus_tag="VD968_18090"
     CDS             complement(3545..4633)
                     /locus_tag="VD968_18090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16354.1"
                     /translation="MRTKILFPLALSAVLLAAAPCAAQSTPANTTSPVELPAEKRLRN
                     VRQLTFGGENAEAYFSGDGRRLIFQSKREGRACDQIYTMRSEDGSDLRMVSTGGGATT
                     CSYYFPDGKKILYASTHLASRECPPPPDRSRGYVWAVHPGFDIFTADPDGSNVKQLTS
                     APGYDAEATMSTDGKRIVFTSVRDGDLDIYTMGADGRNVRRLTNELGYDGGPFFSRDG
                     KKIVYRAYHPKTPEQVERYKKLLSENVIEPNTFELWVMDSDGRNKRQVTSLGVASFAP
                     YFTPDGRSIIFASNYPNRRSRNFDLYLLNLDGTGLERVTYNETFDGFPMFSPDGRRLV
                     FASNRNAAKEGDTNVFIADWVEAPAERR"
     gene            4813..>5729
                     /locus_tag="VD968_18095"
     CDS             4813..>5729
                     /locus_tag="VD968_18095"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HYE16355.1"
                     /translation="MEPTKRFRIAFSFAGEKRDFVEKVAAILAERFGETAVLYDKYHE
                     AEFSRARLGRYLPKLYHEQSDLVVAVFCRDYPRKEWCGLEWDAIFDLLKQRREGEVML
                     SRFDYASVEGLYSDAGFTELDKKTPEQAARLILERLALNEGKPKDFYAKPSSPDSEAR
                     PAHTSIPNNLPRLQPFFGREAELAQIREALDPENRTWGALIDGPGGMGKTSLAIRAAY
                     DCKPDEFKRIVFVSVKNRELDDDGVREMGVFVLPGFLEMLNELARELGRADILKAPED
                     ERIRLLLDALRDERALLILDNLESLPKPDR"
BASE COUNT          919 a         1869 c         1944 g          997 t
ORIGIN      
        1 gtgatgacgg gcaggcgccg gtgcgagtca accttcgagc cgccgaggcc ggggaagtgc
       61 ttgccgcagc cggccacgcc cgcgcgctgg aggccgtcga ggtacgcgcc gccgaggagc
      121 gagaccaact cgggcgccac gccgaacgtg cgcgcgcgca ggccgttgtc gtcgttgtcg
      181 ccggagaggt cgagtacggg cgcgaagttt atgttgaagc ccatcaggcg cagcatcctc
      241 gccgtgaggt ggccgaactt ctcggcgagg tctgcgcggc cggcgttgcg cacggccttc
      301 gccgagggcg acggctcgca gacgtcacgg aagcggtcaa cgaggccgcc ctcctggtca
      361 acgcctatga ggacggagcg gccggcggcg tcgcgtatct gcgcgtttaa gagcgcgacc
      421 tgctcggccg actcgatgtt gcggccgaag agtatgacgc cgcccggtcg gacttcgcgc
      481 aggaactcgc gcctctggcg gtcgagcgcc gtggcgggca ggccgacgaa gaggagcctc
      541 ccggccctcc tctcgattga ctcgccgccg ctcttccctc cgctctttcc ttcaaccgat
      601 gccaagaccc gcgcccctcc cgccagcccg cgccttcgcc gtcacggccc gttcggccgc
      661 ccgcggtcga aagctattcg taattgcgtc ggtgttgtgc ccgacgcgga ttgtagcacg
      721 gcgcgcgcgg cgggcggcag gggcggcccc gtaggcttgc gcgccggggc tcgttggctg
      781 catactttgt gccgtttaag gctcctgctc tcgcgcggcc ggggaaggcc gcgcctgcca
      841 gtgactgtga ggcgacggtg ttcggctgaa ggagagtgag gtcggtcgtt ggtttcgatg
      901 aagccgctct ccgcgagcga agagcaccgg gccggggtcg ccgcccttgc cggggccgca
      961 ggtcggcagg ctggaagagc ccgccggccg tcagcgcgcc acgcaagcct ctcccacccg
     1021 cttcatccct ggtaaggaca gaaaagaatg agcacgagac tttacgtcgg taacctcaac
     1081 ttcaacacta cgggcgagga cttgcgcgag cacttctcga aggccggcga ggtcgagtcg
     1141 gcctcggtgg tcgaagaccg cgagacgggg cgctcgcgcg gcttcggctt cgtggagatg
     1201 gcgaccgccg agggcgcggc cgcggccatc gagatgttca acggcaagga gctcggcggc
     1261 aggacgctga ccgtcaacga ggcgcgcccg cgcgtcgagc ggggcggagg cggctacggc
     1321 ggcggaggcg gctacggggg tggcggcggc cgcggaggcg ggggcggcca acgcgagccc
     1381 cgctggtagg gcgaaaagca gggtctaggg tctaggggct agaggctggt taagacttgt
     1441 tcttctaacc agcttctagc ccctcgtctc acctcctcgc ggcgggcgtg actttgagcg
     1501 tctgcctctg cccgtcgcga acgactgtca cctcgtactc ctgccctgcc ttcatcccgg
     1561 agagtgcctg cgtgtagtcg tatatgttct gcacgtcgcg gccggcgagg cgcacgatct
     1621 tgtcgccggc ccgtagcccc gcggcctctg cgggcgagcc ctcgcgcacg gcgtctatct
     1681 tgagcccgtc ggttgactcg gcgtagctcg gtaccgtgcc tagatagacg cggaagcccg
     1741 tcgagcgcgc gctcgactcg gtcttagcca cggcgaaggt cgggcgcttc tcggaagact
     1801 gaagcgccat gacgatgtcg cgcacgaagg atgtgacgcg tgcgaggccg tcgtagttga
     1861 tgcgctcggc cgtgtcagag ggcttgtggt agtcctcgtg cacccccgtg aagaagaaga
     1921 ggacgggcag gcgtttggcg tagaaggccg agtggtctga cgggccgaag ccgtcttcgt
     1981 tcaggcgcag cttgaagcgc tcaaccggcg tggcgacggc gacgacgttg ccgttgcttc
     2041 ccgtcacgat gacgggcgcg ctcgccgtct tcccgtcggc cgcggggact cgcacgttgc
     2101 cggagcccgt cgcgtcaacg ctcactttga aatccctgtt cgcctcctct atccagcccc
     2161 tccactccga ggctgtgccg acgccgccta tcatcagcga gtcatccttc agacggccga
     2221 ccatgtccat gttgagcatc gcaaccgtgc gctctacggg taaggtgggg ttgttgacgt
     2281 agaagctcga ccccagcagg ccctcctcct cgccgccgaa agcgatgaag accacggtgc
     2341 gcctcatctt cgtcttatcc gcggagagca ggcgggcgag ctctaagagc gcggcagtcc
     2401 ccgaggcgtt gtcgtctgcg ccgtggtgca cgtcgccctc cttcggcgcg aggctcccgc
     2461 gcccgccccg gcccagatgg tcgtagtggg cgcctacgac tacaacctcg tccttgagcc
     2521 gcgggtcgga gccctcaagc accccgacga cgttcgccgc gggcgcgctc tttcgcacca
     2581 cgtccaccga gaggctgacc gcggccttcg gtttcttacc cacgtcggcg gtgtcttcga
     2641 aaaacgtggc cggcgtcttc agcaagcgcg ccatcgcctc gacatccttg agcgccgccg
     2701 cgcccgcgag gccgagaatc ttcgccacgg cccggcgcga aaggactgcg acgggcagcc
     2761 ccgcgtcgcc gcccgcgttg tcgtaagaga gggcggagag cttgtcgttc ctgaagttct
     2821 cgtcctcggc cgcgacgagc agggctttgg cgcccgcgcc gcgcgcggcc gcggccttga
     2881 agcgaatctc gcccgcgcgc gtgaagcgcc cgtgcgggtt gtcgccgtcg ggtgagcccg
     2941 agagcgcgag cgcgaccttg tctttaacgt caacggcctt gtagtcgtcg taatttgctt
     3001 cggccgcggt gatgccgaag cctgcgaaca cgaggggggc gccctccact cgcgcgttcg
     3061 agctgaagcc tagcggcatc cagtcctcgc ccgcgcgcag atcggtcgcc tgcgtctcgc
     3121 cctgctccgt tatcttcagc gagttgccct cgcccaactc gacgccggcg acgtagggga
     3181 actcctgcat gtactcgctc gggacgacct tgttgcgcgg gcctgtcctg gtgttcccgc
     3241 cgggcgcgag cgagagcttg ataaattcat tcgcgacgta ctccgcggcc tcctgcgcgc
     3301 cgcgcgtgcc cgtcttgcgg ccttcgagcc tgtcggaggc caggtgcgag acgtgcgcgc
     3361 gcagccgctc ggcctcgggc gcgggcgggg gcggcgcggc cttctgctgc ggctgctggc
     3421 gcgcgaaggc gccctgcgcg aggagcgcga aggcgagcgc ggcgacgagc gcgcggcgcg
     3481 acttcgtaaa gattgatgac gacataagaa agcctcgtct tactgttttg gttcgggtga
     3541 agggtcagcg ccgctcggcc ggcgcctcga cccagtcggc gatgaagacg ttcgtgtcgc
     3601 cctccttcgc cgcgttgcgg ttcgaggcga agacgagcct gcggccgtcg ggcgagaaca
     3661 tggggaagcc gtcgaaagtc tcgttgtagg taacgcgctc aaggccggtg ccgtcgaggt
     3721 tcaagaggta caggtcgaag ttgcggctgc ggcggttcgg gtagttcgag gcgaagatga
     3781 tggagcggcc gtcgggcgtg aaatacggcg cgaagctcgc cacacccagg ctagtcacct
     3841 gccgcttgtt ccggccgtcc gagtccatca cccataactc gaacgtgttg ggctcgatga
     3901 cgttctccga taggagcttc ttgtagcgct ctacctgctc gggcgtcttc gggtggtatg
     3961 cgcgatagac gatctttttt ccgtcgcgcg agaagaaggg gccgccgtcg tagccgagtt
     4021 cgttagtcag ccgccttacg ttccggccgt cggcgcccat cgtgtagatg tcgaggtcgc
     4081 cgtccctgac ggaggtgaag acgatccttt tgccgtcggt gctcatcgtc gcctcggcgt
     4141 cgtagccggg cgccgaggtc aactgcttga cgttcgagcc gtcggggtcg gcggtgaaga
     4201 tgtcgaagcc gggatggacg gcccacacgt agccgcgcga gcggtcgggc ggcggcgggc
     4261 attcgcgcga ggcgaggtgc gtcgaggcgt agaggatttt tttgccgtcg gggaagtagt
     4321 aagagcatgt ggtcgcgccc ccgccggtcg aaaccatccg aaggtcagag ccgtcctccg
     4381 agcgcatcgt gtaaatctgg tcgcacgcgc gcccctcacg cttcgactgg aaaatcagcc
     4441 gccgcccgtc gcccgaaaag taagcctccg cgttctcgcc gccgaaggtc aactgccgga
     4501 cgttgcgcag ccgcttctcg gcaggcagtt cgacggggga agtggtgttc gcgggagtgc
     4561 tctgggcggc gcacggcgcg gcggccaaga ggacggcgga gagagccagg gggaacagta
     4621 ttttcgttct catcaatctt aaaaaggaag gttacgcagt gcgaaagggg agactgacga
     4681 cgcccttact ttaaaccgcc ccgccgcgcg tgccaagcac gctccgcgcc gggtgttgct
     4741 cgttacggcc cccgccgtag ataatcagcg ccagcggccg cgcccttacg catactcacg
     4801 ggggtttgaa ctatggagcc caccaaacgc ttccgcatcg ccttctcctt cgcgggagag
     4861 aagcgtgact tcgtcgaaaa agtcgcggcc atcctcgcag agcggtttgg cgaaactgca
     4921 gtcctctacg ataaatacca cgaagccgag ttctcgaggg cgagactcgg gcgatacctg
     4981 cccaagcttt accacgaaca gtccgactta gtagttgccg ttttctgccg agactacccg
     5041 cgcaaggaat ggtgcgggct agaatgggac gcgatttttg acctgctcaa gcagcggcgc
     5101 gagggcgaag tgatgctcag caggttcgac tacgcgagcg tcgagggtct ctactcagat
     5161 gccggcttta ccgagctaga caaaaagact cccgagcagg cggccaggct aatcctagaa
     5221 cgcctcgcgc tcaatgaagg caagcctaaa gacttttacg ccaagccctc ttcgcccgac
     5281 agtgaggccc gcccggcgca tacctccatc ccgaacaacc tcccgcggct tcagcccttc
     5341 ttcggccgcg aggcggagct ggcgcaaata cgcgaggcgc tcgacccgga gaaccgcact
     5401 tggggcgcgc tcatagacgg gccgggcggg atgggcaaaa cctcgctcgc catccgcgcc
     5461 gcatacgact gcaagcccga cgagttcaag cgcatcgtct tcgtctccgt gaagaaccgc
     5521 gagcttgatg acgacggcgt gcgcgagatg ggcgtcttcg tactgcccgg cttcctcgaa
     5581 atgctcaacg agcttgcgcg cgagctaggc cgagcggaca tccttaaagc cccggaggac
     5641 gagcgcatcc ggctgctgct tgatgcgcta cgcgacgagc gtgcgcttct aatcctcgac
     5701 aacctcgaat cgctccccaa gcccgaccg
//
LOCUS       DASPKR010000685         4636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_111444, whole genome shotgun sequence.
ACCESSION   DASPKR010000685 DASPKR010000000
VERSION     DASPKR010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4636)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4636
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111444"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1699)
                     /locus_tag="VD968_18100"
     CDS             complement(<1..1699)
                     /locus_tag="VD968_18100"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF001756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HYE16356.1"
                     /translation="MAERLPEEIVPDNDQTRARREHLEKIQALVGNPYPNKFARTSLA
                     PGSEGEDTITSIAAAFRVHEPEVEEGGRPSAEQLEAANEALKSYTVRVSGRIATPPRV
                     MGKAAFVHLSDGRERLQIYVRKQDAAAVSNDSLQPVEEGESGWKLFQLLDHGDFIGVE
                     GFLFVTKTGELSVHVEKIQFLSKSLLPMPDKMHGIADPEIRQRQRYADLIASSLKVER
                     EPGELTTREVFERRSRLITHLRRYLDDHGYVEVETPMLSPIASGAAARPFKTHHNALD
                     IELYLRIAPELYLKRLLVGGFERVYELNRNFRNEGIGYRWNPEFTMLEFYTAYQDAEW
                     MMDFCEEMLRATILASTGTTRVTFNDEEIDFGQQFKRLTMKQAIDEYFPQDYTSLGSE
                     PYDKTWLDDPTRLHLLNTFLGARKNNTLSNESAWLIAESQIRHFENHKVPQDDTLMAR
                     ETAEIFEHVAEHRLLQPTFITDFPKSISPLSKGSPNNPAVAERFELYVAGMEIANGFS
                     ELNDPAEQLERFGEQARQRERGDDEAMQTDEDYVRALSYGMPPAAGIGIGIDRLTMLL
                     "
     gene            1795..2283
                     /gene="rfaE2"
                     /locus_tag="VD968_18105"
     CDS             1795..2283
                     /gene="rfaE2"
                     /locus_tag="VD968_18105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003768921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase"
                     /protein_id="HYE16357.1"
                     /translation="MSGRVILDREELLRARARLREAGRRLVFTNGCFDLLHVGHVRYL
                     KAARGLGDALLVAINSDASVRSLKGEGRPVMSESERAELLASLACVDVVTVFDEESPR
                     GLIRELLPDVLVKGGDYGLDEIHGREEVEAAGGRVLALPFVEGASTTGIIERIKAGTS
                     DE"
     gene            2276..>4636
                     /locus_tag="VD968_18110"
     CDS             2276..>4636
                     /locus_tag="VD968_18110"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HYE16358.1"
                     /translation="MSSTAESVPVLRRVLGRVTGGAEFRRLAAEVAGGARVVSVAGLT
                     SSSARALVLAALQRETGRRFAVVVEANRDTEGWERDLSFWCSALGQGSGAAAECGAVL
                     TLPASEGDPYAGASPHAETLERRALTMWHLSQGRGDFVLLTGRALVRRTVSPERLKEA
                     GARLKRDEDYPPEDLVELLLASGYVREDPVGAVGEFSMRGGILDVWPPGQTSPVRVEF
                     FGDAVDSIRRFDPETQLSVEQLQQVEVVPMREYAVGRDDFRLWAEAARERWPEEAQAR
                     ALKDRTVHADEGETFAGWEWMIPLILKTGASAFDYLGDAVLVLDEPAGIEQHLANTYE
                     TLRARFEENESAGEIGLAPEELYLTPEELRERLGEARRLELRALGRAAAVVDERFAGE
                     SEEPAARIGRARPAPKPLFLFPAVGEAPEVELRSLPPKRYHGRIPDLAADVRRTAAEA
                     KAVTLFAMPSAGVAERVGDMLADYNVPARVALAGEAGAEGFDLPAVVTVGKLTGGFEL
                     PGAGLVVHVEADLFDEASDSVIERQKPGTSGGTTGSARRRKSKTAAFLSDFRDLKVGD
                     YVVHIDHGIARFGGLQTLELGGRKGEFMLLFYAEDAKLYVPVERLDLVQRYSSAEGHE
                     PTLDRLGGLGWHKTKAKAKRAMRDMADELLKLYAERKLVQGYAFAADSPWQREFEDAF
                     EYVPTPDQETAIEDVKRDMEQTVPMDRLLCGDVGYGKTEIAMRAAFKAVMGSKQVAVL
                     APTTVLAYQHYETFRARFAAFPVQIELISRFRSPKEQKAIVKRVESG"
BASE COUNT          739 a         1495 c         1604 g          798 t
ORIGIN      
        1 tcagaagcat cgtcaggcgg tcaatgccga tgccgatgcc tgcggccggc ggcatcccgt
       61 aggagagcgc ccgcacgtaa tcctcgtcgg tctgcatagc ctcgtcgtcg ccccgctcgc
      121 gctgccgcgc ctgctccccg aacctctcca actgctccgc cgggtcgttc aactccgaga
      181 acccgttagc aatctccatc cccgccacgt acaactcgaa cctctccgcg acggccgggt
      241 tattcgggga gcccttcgag agcggcgaaa ttgattttgg aaagtcggtg atgaaagttg
      301 gttgcaggag acggtgctcg gctacgtgct cgaaaatttc agccgtctcg cgggccatca
      361 gtgtgtcatc ctgcgggact ttatgatttt caaaatggcg tatctgactc tcagcgatta
      421 gccatgcgct ctcattcgag agtgtgttgt ttttgcgcgc cccgaggaaa gtgttcaaga
      481 ggtgtaaacg cgtcgggtca tccagccatg tcttatcgta gggctcgctg cctagcgagg
      541 tgtagtcctg cggaaaatat tcatcaatag cttgcttcat cgttagccgc ttgaactgct
      601 ggccgaaatc tatctcttcg tcattaaacg tgacgcgcgt tgtgccggtc gaagccaaga
      661 tggtagctcg tagcatctcc tcgcaaaaat ccatcatcca ctcggcgtcc tggtaggccg
      721 tgtagaattc gagcatggtg aactcggggt tccagcggta gccgatgccc tcgttgcgga
      781 agttgcggtt tagctcatag acgcgctcga agccgccgac gagcaggcgc tttaggtaaa
      841 gctcgggcgc gatgcggagg taaagctcga tgtcgagcgc gttgtggtgc gtcttaaaag
      901 ggcgcgcggc ggcgccggag gcgatgggcg agagcatggg cgtctcgacc tcgacgtagc
      961 cgtgatcgtc aagatagcgg cgcaggtgcg taatcaaacg cgaacggcgc tcgaagacct
     1021 cgcgcgtcgt tagctccccc ggctcgcgct cgaccttgag gctcgaagca atcaggtcgg
     1081 cgtagcgctg gcgctggcgt atctcggggt cggcgatgcc gtgcatcttg tcgggcatcg
     1141 gcagcagcga tttcgacagg aactgaatct tctcgacgtg gacggagagc tcgcccgtct
     1201 tcgtgacgaa gaggaagccc tcgacgccta tgaagtcgcc gtggtcaagg agctggaaga
     1261 gcttccagcc gctctccccc tcctcgacgg gctgcaagga gtcgttgctg acggccgcgg
     1321 cgtcctgctt gcgcacgtag atttgaagcc gctcgcgccc gtccgagagg tgcacgaacg
     1381 cggccttgcc catcacgcgc ggcggcgtcg ctatgcgccc cgacacgcgc accgtgtaac
     1441 tcttcagggc ctcgttggcc gcctccaact gctcggccga aggccgcccg ccctcctcca
     1501 cttcgggctc gtgcacgcgg aacgcggcgg cgattgaggt gattgtgtcc tcgccctccg
     1561 agcccggcgc gagcgatgtg cgcgcgaact tgttcgggta ggggttgccg acgagggcct
     1621 gaatcttttc gaggtgctcg cgccgggcgc gcgtctggtc gttgtcgggg actatctctt
     1681 cgggaagccg ttctgccatg attcgtagat agtaaatctt gcgccgccgt tagacaaaac
     1741 tccccgcccg ccgtttacga ttcgccctct gcggtttacg ataggcgaaa accaatgagc
     1801 ggaagggtga ttctcgaccg ggaggagttg ctgcgcgcgc gcgcgcgtct gcgcgaggcg
     1861 ggccggaggc tcgtcttcac gaacggctgc ttcgacctcc tgcacgtcgg gcacgtccgc
     1921 tacctcaagg cggcgcgcgg gctgggagac gccttgctcg tggcgattaa cagcgacgct
     1981 tccgtgcgct ccctcaaggg cgaggggcgg cccgtgatga gcgagtcgga gcgcgccgag
     2041 ctgctcgcct cgctggcgtg cgtggacgtc gtgaccgtct tcgacgagga gtcgccgcgg
     2101 gggttgataa gagagctgct gcccgacgtg ctagttaagg gcggcgacta cggcctcgac
     2161 gagatacacg ggcgcgagga ggtcgaggcg gcgggcggcc gcgtgctcgc gctacccttc
     2221 gtcgagggcg cctcgaccac gggcatcatc gagaggataa aggcggggac gagcgatgag
     2281 tagcacagcc gaatccgttc cggtcttgcg gcgcgtgctg gggcgcgtga cggggggcgc
     2341 ggagttccgg cgcctcgcgg cggaggtcgc gggcggcgcg cgcgtggtgt ctgtggcggg
     2401 gctcacgtcc tcgtcggcgc gggcgctcgt gctcgcggcc ttgcagcgcg agacggggcg
     2461 gcgcttcgcc gtcgtggtcg aggcgaaccg cgacacggag ggctgggagc gcgacctctc
     2521 cttctggtgc tcggcgctgg ggcagggctc gggcgcggcg gccgagtgcg gcgcggtgct
     2581 cacgcttccc gcctccgagg gcgaccccta cgcgggcgcc tccccgcacg cagagacctt
     2641 agagcgccgt gctctaacga tgtggcacct ctcgcagggg cgaggcgact tcgtgctgct
     2701 cacggggcgc gctctcgtgc gccggacggt gagccccgag cggctcaagg aagcgggcgc
     2761 gcgcctcaag cgcgacgagg actacccgcc agaggatttg gtcgagctgc ttctcgcgtc
     2821 cggctacgtg cgtgaagacc ccgtgggggc ggtcggcgag ttctccatgc gcggcggcat
     2881 cctcgacgtt tggccgcccg gtcaaacgtc gcccgtgcgc gtcgagttct tcggcgacgc
     2941 ggttgactcc atacgccgct tcgacccgga gacgcagctc tcggtagagc agttgcagca
     3001 ggtcgaggtc gtccccatgc gcgagtacgc cgtgggccga gacgacttcc gcctctgggc
     3061 cgaggccgcg cgcgagcgct ggccggaaga ggcgcaggcc cgcgcgctga aagaccgcac
     3121 cgtccacgcc gacgaaggcg agaccttcgc cggctgggag tggatgatac ccctgatatt
     3181 gaagacgggc gcgagcgcct tcgactacct cggcgacgcg gtgctcgtcc tcgacgagcc
     3241 cgcaggcatc gagcagcacc tcgctaacac ttacgagact cttcgcgcgc gcttcgagga
     3301 gaacgagtcg gcgggcgaaa tcggcctcgc gcccgaggag ctttacctga cgccggaaga
     3361 gttgcgcgag cgcctgggcg aggcgcgccg gcttgagctt cgcgcgctgg gccgcgcggc
     3421 ggccgtcgtg gacgagcgct tcgccggaga gtcggaagag ccggcggcgc ggatagggcg
     3481 cgcgcgcccg gcgcccaaac ccctcttcct cttccccgcg gtgggcgagg cgcccgaagt
     3541 cgagctgcgc tcgctcccgc ccaagcgcta tcacggccgc atacccgacc tcgccgcgga
     3601 cgtgcgccgc accgccgccg aggcgaaggc cgtgacgctc ttcgcaatgc cctcggccgg
     3661 cgtggccgag cgcgtgggcg acatgctcgc agactacaac gtgccggctc gcgtcgcgct
     3721 cgcgggcgag gccggcgccg agggctttga cctgccggcc gtcgtcaccg tcggcaagct
     3781 cacgggcggc ttcgagctgc cgggcgccgg gctggtcgtc cacgtcgagg ccgacctgtt
     3841 cgacgaggcg agcgattccg tcatcgagcg gcagaagccc gggacttcag gcggcacgac
     3901 cggctcggcg cgccgccgca agtcgaagac ggccgccttc ctctccgact tccgcgacct
     3961 gaaagtcggc gactacgtcg tccacataga ccatggtatc gcgcgattcg gcggcttgca
     4021 gactctggaa ctgggtgggc gcaagggcga gttcatgctg ctcttctacg ccgaggacgc
     4081 gaagctctac gtccccgtcg agcgccttga cctagtgcag cgctactcct ccgccgaggg
     4141 gcacgagccc acgctcgacc ggctcggcgg cttgggctgg cacaagacga aggcgaaggc
     4201 caagcgcgcc atgcgcgaca tggccgacga gcttctgaag ctctacgccg agaggaagct
     4261 ggtgcagggc tacgccttcg cagccgacag cccgtggcag agagagttcg aggacgcctt
     4321 cgagtacgtc cccacccccg accaggagac cgccatcgag gacgtgaagc gcgacatgga
     4381 gcagaccgtg ccgatggaca ggctgctgtg cggcgacgtg ggctatggga agaccgagat
     4441 agccatgcgc gcggcgttca aggccgtgat gggctcaaag caggtagccg tgctcgcgcc
     4501 gaccacggtg ctcgcctacc agcactacga gaccttccgc gcgcgcttcg cggccttccc
     4561 cgtgcagata gaattgatct cgcgcttccg ctcgccgaag gagcagaagg cgattgtgaa
     4621 gcgcgtcgag tctggc
//
LOCUS       DASPKR010000686         3784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1145917, whole genome shotgun sequence.
ACCESSION   DASPKR010000686 DASPKR010000000
VERSION     DASPKR010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3784)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3784
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1145917"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..1007
                     /locus_tag="VD968_18115"
     CDS             138..1007
                     /locus_tag="VD968_18115"
                     /inference="COORDINATES: protein motif:HMM:NF024498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HYE16359.1"
                     /translation="MLDKNAPSTSTLEHYPSRAGIREGAGATHWRWPAAFAALLVLTL
                     VFPARAQQPAQKSDGQAELKKEIEELKAGQQALMKELQEIRKLLLPRQPAAAAEPPRE
                     VVFDISGAPFKGDANARLTLIEFSDYQCPFCARHVRDTLPQIERDYVKTGKLKYVFRD
                     MPLESIHPHALKASEAAHCAGEQGKFWEMHNSLFGNQTALSASDLATYARGVGVDAAK
                     FQQCLDGGKYAADIRRKMSEVLSLGVTGTPTFFVGVTTPGDPKVKVVRALRGAASYAN
                     FKEVLDGLLSARQ"
     gene            1343..>3784
                     /locus_tag="VD968_18120"
     CDS             1343..>3784
                     /locus_tag="VD968_18120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16360.1"
                     /translation="MAVQTAIEETRKASEPAPPASAPTETASAPAAKDAVTTGPAGDF
                     TPVPAQSDAARQQPPAPAGQRPRHVRKPLDKTHAIRGKGVSLRYSENWSVAPRRFANM
                     DELIDVPPGHLHSKPLTSKIKITTEQRRSHEEALRRLEEVRTGLGAPASSYLTVGGWP
                     AFQYRRVEERPSPGDKEELRRPQFKDDKMLRITTVVAAAELLVRLEAALPSDADPELI
                     EETEAISRSLTFSSSADSRRTRDELARLRMAKPAQPAAAVASARPPAEPPAAEKNFTP
                     VSGGASKTATLPLNEADLAPLRQEEYPEPGLTQRVITGRFGELEIAVSPNGRNIVIGQ
                     QSAFRSSNDGGQTFPFNGTIAFSGGDPSLAYGRSGNFYYAGIRGGCQAADAAGPAGYS
                     CTGMARSTDNGQTFPIVANAVVCPNQTTPPATPLANACFPDQEHIAADRTNSAPGGDQ
                     VYSTWRNFDATDQDPGLVCSQDSGINWTAPITVGTGAFPRINVGQDGFVYVVYLDGGN
                     YMLNKYSSCATGLAPQPGFPVVVTARSPVNCPFAGHDRCDQNPSSQTIAVDDTNPNHV
                     YFSYSENTGNPNNENIMVRDSLDGGLTWPAARVAQVSSGVNGKRIMPWVCTTGGEAFV
                     TWYDRRAATPCATPPCAANNDLTDYYAGRVRLDLGGNLVVGNEIKLTEVSDPWCASGW
                     PCGTRGTNSSESCSVQPQLAGFCCTGLDANGNCVGSGNRCDFNPDTCTGGETCQNIGG
                     GCPKYGDYNGNACAAGRLFAAWASATSPPSVTPASTSIDIFYTSKLVGDVPQIQVPGS
                     VAFGDACVGATATQTL"
BASE COUNT          659 a         1458 c         1179 g          488 t
ORIGIN      
        1 ttctgccgcc tccggggcgg ctaatcccga cctggcaatc ttctgccgcg ctccctgtca
       61 gagtcaattc ctatcagcgc ccgtattcgc gcgcggccgc gtcacgacgg gcatacccga
      121 tctctggagg caaaccgatg ctggataaga acgccccttc cacttcaacc cttgaacact
      181 acccgtcccg cgccggaatc cgtgaaggcg ccggcgcgac gcattggcgg tggccggccg
      241 ccttcgccgc cttactcgtc ctgacgcttg tcttccccgc gcgcgcgcaa cagccggcgc
      301 aaaaatctga cgggcaggcg gagctgaaaa aagagatcga ggagctgaag gccggccagc
      361 aggcgctcat gaaggagttg caggagataa ggaagctcct actcccgcgc cagccggcgg
      421 ccgccgccga gccgccccgc gaggtcgtct tcgacatcag cggcgcgccc ttcaaaggcg
      481 acgccaacgc ccggctgacg ctcatcgagt tctccgacta ccagtgccct ttctgcgccc
      541 gccacgtccg cgacacgctc ccccagatag agcgcgacta cgtcaagacg ggcaagctca
      601 agtacgtctt ccgcgacatg ccccttgagt caatccaccc tcacgcgctc aaggcgtcag
      661 aggccgcaca ctgcgcgggc gagcagggca agttctggga gatgcacaac agcctcttcg
      721 gcaaccagac ggcgctgtcg gcctcggacc tcgcgactta cgcccgcggc gtcggggttg
      781 acgccgcgaa gttccaacag tgcctcgacg gcggcaaata cgcggccgac atccgccgga
      841 agatgtccga ggtgctgagc ctcggcgtga cagggacgcc gaccttcttc gtcggggtga
      901 cgacgcccgg cgacccgaag gtgaaggtcg tccgcgcgct ccgcggcgcc gcctcctacg
      961 cgaacttcaa ggaggtgctc gacggcctcc tctccgcacg ccagtagaac gccccactcg
     1021 cggcatcggc gcgcgcccag cacccctcgt gccggggcga gccggcgtcc cacgtgagcc
     1081 gcgtcagaaa cctcgccgta aagataagga gcctgcacag gcgggcaccg gcctgactcg
     1141 tctcggcgaa atctgagggc gtcaaggcgc gccgcgccga cgcccacggc cgcgagtctc
     1201 aggccgcgcc cggccgggtg ccggcaacag gagacgcgac atgaggtgtt tattaaaact
     1261 gactttagtc gcaggcgcgt gcgcgctgct gtccggcgtt tcgcccccgc gagccgcggc
     1321 gcaggccccc gcgcaggacg cgatggcggt ccagacggcc atagaagaga cgcgcaaagc
     1381 ttccgaaccc gctccgcccg cgagcgcccc cacggagact gcctccgccc ccgccgcgaa
     1441 ggacgccgtg accacggggc ccgcgggaga cttcacgccc gtccccgcgc agagcgacgc
     1501 ggcgaggcag cagccgcccg cccccgccgg acagcgcccg aggcacgtgc gcaagcccct
     1561 cgacaagacc cacgcgatac gcggcaaggg cgtcagcctg cgctactccg agaactggtc
     1621 ggtggcaccc aggcggttcg ccaacatgga cgagttgatt gacgtgccgc ccggccacct
     1681 ccactcgaag cccctgacct cgaagataaa gataacgacc gagcagcggc gctcgcacga
     1741 ggaggcgctc cgccgcctcg aagaggtgcg cacagggtta ggcgcgcccg cctcgtccta
     1801 cctgaccgtc ggcggctggc ccgcgttcca gtaccggcgc gtcgaggagc gcccgagtcc
     1861 gggcgacaag gaggagctcc gccgcccgca gttcaaagac gacaagatgt tgaggatcac
     1921 gaccgtcgtc gcggccgccg aactgctcgt gcgcctcgaa gcggccctgc cctcggacgc
     1981 cgacccggag ctcatcgagg agaccgaggc catcagccgc agcctgacct tctcttcctc
     2041 cgccgactcc agaagaacgc gggacgagtt ggcgaggctg cgcatggcta agcccgcaca
     2101 gccggcggcc gccgtcgctt cggccaggcc ccccgccgag ccgcccgcgg ccgaaaaaaa
     2161 tttcaccccc gtgagcgggg gcgcgagcaa gaccgcgacg ctccccctga acgaggccga
     2221 cctcgcgccc ctgagacagg aggagtatcc ggagcccgga ctcacgcagc gcgtcatcac
     2281 cgggcgcttc ggcgagcttg agatagccgt ctcgccgaac gggcgcaaca tcgtcatcgg
     2341 ccagcagagc gccttccgca gctcgaacga cggcggccag acgttcccgt tcaacggcac
     2401 catcgccttc agcggcggcg acccctcgct cgcctacggc cgcagcggca acttctacta
     2461 cgcgggcatc cgcggcggct gccaggcggc cgacgccgcg ggccccgccg gctacagctg
     2521 cacgggcatg gcgcgctcga ccgacaacgg ccagaccttc cccatcgtcg ccaacgccgt
     2581 cgtctgcccg aaccagacga cgccgccggc cacgccgctc gccaacgcct gcttccccga
     2641 ccaggagcac atcgccgccg accggaccaa ctccgcgccc ggcggcgacc aggtctactc
     2701 gacctggcgc aacttcgacg cgaccgacca ggaccccggc ctggtctgct cgcaggacag
     2761 cggcatcaac tggacggcgc ccatcacggt cggcaccggc gcgttcccgc gcatcaacgt
     2821 cggccaggac ggcttcgtct acgtcgtcta cctcgacggc ggcaactaca tgctcaacaa
     2881 gtacagctcg tgcgccacgg ggctcgcgcc ccagccgggc ttccccgtcg tcgtcacggc
     2941 ccgcagcccc gtcaactgcc cgttcgcggg ccacgaccgc tgcgaccaga acccctcatc
     3001 gcagaccatc gcagttgacg acaccaaccc gaaccacgtc tacttctcct actcggagaa
     3061 caccggcaac cccaacaacg aaaacatcat ggtgcgcgac tcgctcgacg gcggcctgac
     3121 gtggcccgcc gcgcgcgtcg cgcaggtgag cagcggcgtc aacggcaagc gcatcatgcc
     3181 gtgggtctgc acgacgggcg gcgaggcctt cgtcacctgg tacgaccgcc gcgccgccac
     3241 cccgtgcgcc accccgccgt gcgccgccaa caacgacctg accgactact acgccggccg
     3301 cgtccgcctc gacctcggcg gcaatctcgt cgtcgggaac gagatcaagc tgacggaggt
     3361 gagcgacccg tggtgcgcct cgggctggcc gtgcggcact cgcggcacga acagctccga
     3421 gtcctgctcg gtccagccgc agctcgcagg cttctgctgc acggggctcg acgccaacgg
     3481 caactgcgtc ggctccggca accgctgcga cttcaacccc gacacctgca ccggcggcga
     3541 gacctgccag aacatcggcg gcggctgccc gaagtacggc gactacaacg gcaacgcctg
     3601 cgccgccggc cgcctcttcg cggcctgggc ctcggccacc tcgccgccct cggtcacgcc
     3661 ggcctccacc tcgatagaca tcttctacac gtcgaagctc gtcggcgacg tgccgcagat
     3721 acaggtgccg ggcagcgtcg cgttcggcga cgcgtgcgtg ggcgcgacgg cgacgcagac
     3781 cttg
//
LOCUS       DASPKR010000687         2195 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1271754, whole genome shotgun sequence.
ACCESSION   DASPKR010000687 DASPKR010000000
VERSION     DASPKR010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1271754"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1559)
                     /gene="murA"
                     /locus_tag="VD968_18125"
     CDS             complement(<1..1559)
                     /gene="murA"
                     /locus_tag="VD968_18125"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR01072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HYE16361.1"
                     /translation="MDKFLIRGGRPLEGRVSVSGAKNSALPCMAAAILTAETVTLHNV
                     PYVRDCLTQRRLLEDLGATVLVPDLRTHKITASNIELLEAPYDLVKTMRASVLALGPL
                     VARFGKAKVSLPGGCAIGSRPIDLHLEALKLLGAQVGLEAGYVVARAPKGGRLVGADI
                     SFPKVTVTGTENLLMAATLARGTTVLRNAAREPEISDLAELLNRMGARVRGAGTEEIT
                     VEGVESLGGAEHTIIPDRIETGTFLVAAAITGGELEVKDCQPAHLGAVIAKLREAGVE
                     IEEVNTTCLRARRSAGGLRAVGVTTEPYPGFPTDMQAQYMALMTQAEGRSRIVETIFE
                     NRFMHASEMQRMGARIHVEGHSTAVVEGPSGLAGARVQGRRVDLLDLDAGLAQALDDG
                     GEVLRLAVLHLQLAVGDGGGDEERAGLDAVGDDRVLGPAEPLDAFDGDRVGARAADAR
                     AHAVEQVREVFDLRLARGVAQDGGAARERRRHQEVLRAGHGHLLELDVGAYETAALRG
                     ARDDVAGFETHL"
     gene            complement(1684..>2195)
                     /locus_tag="VD968_18130"
     CDS             complement(1684..>2195)
                     /locus_tag="VD968_18130"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HemK/PrmC family methyltransferase"
                     /protein_id="HYE16362.1"
                     /translation="GTGSGCIAVAILHEHAGARAVALDLSPAALRVARRNAERHGVAG
                     RVELIESDCFDALREEEGGRRFDLIASNPPYVPERDLDGLQREVRDYEPRLALTPGGD
                     GLGVIRRLLAESPRFLAPRGHLLFEIGFGQRESVARLVDARAWEPPRVREDLQGIPRA
                     FVLRRRGPE"
BASE COUNT          329 a          766 c          775 g          325 t
ORIGIN      
        1 aggtgcgtct cgaatccggc tacgtcgtcg cgcgcgcccc gcagggcggc cgtctcgtag
       61 gcgccgacat caagttcgag aaggtgaccg tgaccggcac ggagaacctc ttgatggcgg
      121 cgacgctcgc gcgcggcacc accgtcttgc gcaacgccgc gcgcgagccg gaggtcgaag
      181 acctcgcgga cctgctcaac cgcatgggcg cgcgcgtccg cggcgcgggc accgacacga
      241 tcaccgtcga aggcgtcgag gggctcggcg gggccgagca cacgatcatc cccgaccgca
      301 tcgagaccgg cacgttcctc gtcgccgccg ccatcaccga cggcgagctg gaggtgaagg
      361 actgccagcc gcagcacctc accgccgtcg tcgagcgcct gcgcgaggcc ggcgtccaga
      421 tcgaggaggt caacccgacg accctgcacg cgcgcgcccg cgagccccga aggcccctcg
      481 acgacggccg tgctgtggcc ctcgacgtga atgcgagcgc ccatgcgctg catctcggag
      541 gcgtgcatga agcggttctc gaagatggtc tcgacgatgc gggagcgccc ctccgcctgc
      601 gtcataaggg ccatgtactg cgcctgcatg tcggtgggga agcccggata gggctcggtc
      661 gtgacgccca cggccctgag cccgccggcc gagcgccggg cgcgcaggca agtcgtgttg
      721 acctcttcta tctcgacgcc cgcctcgcgc agcttcgcga tgactgcgcc gaggtgggcc
      781 ggctggcagt ctttcacttc cagctcgccg cccgttatcg ccgccgcgac gaggaacgtc
      841 ccagtctcga tgcggtcggg gatgatcgtg tgctcggcgc cgccgagcga ctcgacgccc
      901 tcgacggtta tctcctccgt ccccgcgccg cgcacgcgcg cccccatgcg gttgagaagc
      961 tccgcgaggt cgcttatctc gggctcgcgc gcggcgttcc gcagcacggt cgtcccgcgc
     1021 gcgagcgtcg ccgccatcag aaggttctca gtccccgtca ccgtcacctt cgggaagctg
     1081 atatccgcgc ctacgaggcg cccgcccttc ggcgcgcgcg cgacgacgta gcccgcttcg
     1141 agcccgacct gcgcgcccag gagcttcagg gcttcgaggt gcaggtcaat aggccgcgag
     1201 cctatggcgc acccgcccgg cagcgagacc ttagccttgc cgaagcgcgc cacgagcggc
     1261 ccgagcgcga gcaccgaggc gcgcatcgtc ttaaccagat cgtaaggcgc ttcgagcagc
     1321 tctatgttcg aggcggttat cttgtgcgtg cggaggtctg ggacgaggac ggtcgcgccg
     1381 aggtcttcga ggagccgccg ctgcgtcagg cagtcgcgca cgtaaggcac gttgtgcagc
     1441 gtgacggtct cggcagtcag tatggccgcc gccatgcacg ggagcgcgga gttcttcgcc
     1501 ccgctcaccg atacgcgccc ttcgagcggg cgcccgcccc ggattaagaa tttgtccata
     1561 agaggctaga ggctggggac tagaggctag aggctagtag aagaactgtt ataactagcc
     1621 tctagcctct agtccccagc ctctgatttt tggcggattc tagcacggcg cggcgcggcg
     1681 cggctactcc ggcccgcggc ggcgcagcac gaacgcgcgc gggatgcctt gcaggtcttc
     1741 gcgcacgcgg ggcggctccc acgcgcgcgc atctacgagg cgcgcgaccg attcgcgctg
     1801 gccgaagcct atctcgaaga ggaggtggcc gcggggggcg aggaagcggg gcgattccgc
     1861 gagcaggcgg cgtatgactc cgaggccgtc gccgccgggc gtgagcgcga ggcgcggttc
     1921 gtagtcgcgc acctcgcgct gaaggccgtc gaggtcgcgc tccggcacgt aaggcgggtt
     1981 cgaggcgatt aggtcgaagc gtcggccgcc ttcttcttcg cgcagggcgt cgaagcagtc
     2041 ggactcgatg agctcgacgc ggccggccac gccgtggcgc tcggcgttgc gacgcgcgac
     2101 cctgagcgcc gcgggcgaca gatcgagcgc gacggcgcgc gcgcccgcgt gctcgtgcag
     2161 aatggcgacc gcgatgcagc cggagccggt gccga
//
LOCUS       DASPKR010000688         3050 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_894104, whole genome shotgun sequence.
ACCESSION   DASPKR010000688 DASPKR010000000
VERSION     DASPKR010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3050)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3050
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_894104"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..619
                     /locus_tag="VD968_18135"
     CDS             <1..619
                     /locus_tag="VD968_18135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16363.1"
                     /translation="QGWSLEQFNSFERLLHNTINRKKRNGEPRIASITSHIMLDDYDE
                     TLPEDMRAHPRCRSPYIFNVANVMEGVAMWANSQVYYDPIHYIFAGGDDETGNLDRWF
                     SHCFERDLTIRHFRLGKGFTRIGYDLQWMKSEPALQMVDCPAYELNKMTIEWAKNNFN
                     PILKSELRNSLSSLCRIDHFGVTLRKPELIESFDAIRENDKRLGL"
     gene            complement(791..2233)
                     /locus_tag="VD968_18140"
     CDS             complement(791..2233)
                     /locus_tag="VD968_18140"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYE16364.1"
                     /translation="MKTKLPALLLLFCLAAAAFAQSPDRQQFVRVEAPTVVLAHVRVI
                     DGTGAAPLEDQTVVISGGKIQSVGPSASARPAAGAQVLDLAGYTVLPGLVGMHNHLFF
                     PMGGSPPMYSNMGTSFPRLYLALGVTTIRTTGSVAPYTDLEIKRLIDSGRMIGPKMHV
                     TAPYLEGPGAFTPVMRQLTGPEDARRMVNYWADAGATSFKAYMNITREELRAVVEEAH
                     RRGLKVTGHLCSIGYREAAEIGIDNLEHGLFADSEFVPDKKPDQCPPGAAVSASLRQL
                     DINGPAAQETIRTLVAKNVAVTSTLPVFEAGGAPLAQSGIGAAGALLNPRVLGVMSVD
                     ARVRYLQARARVPGGPDFLALLRKAMDFERAFVRAGGLLIAGLDPTGNGGVVAGFGDL
                     REVQLLVEAGFTPVEAIKIATLNGAKFLGEDARIGSVAPGKQADLMVVRGNPAVNIAD
                     LEKVEIVFKDGVGYDSEKLIQSVQGLVGIR"
     gene            2434..>3050
                     /locus_tag="VD968_18145"
     CDS             2434..>3050
                     /locus_tag="VD968_18145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16365.1"
                     /translation="MRKLVIALLFVFAVASGAASAQEPARKQAAPPSPPQPALSEDVT
                     DARLRALFDAAREAIAGMRFDEALRLTEQGLAAAPNQPSFWLNRAHALYARGAATYNR
                     FYRSKEEAERKAGLEASRRDFRDALAAATRGLALIDDYQPSDDEALRTSLAALRRAAL
                     WQRAEILFTCATRVDESYYPDALAAFEQYASVETDPAMSNVARYF"
BASE COUNT          567 a          943 c          991 g          549 t
ORIGIN      
        1 tcaagggtgg tcgttagaac agttcaattc atttgagcgg ctgctccaca acacaatcaa
       61 ccggaagaaa cgaaacggtg agcctcgaat agcatcaata acgtctcaca taatgttgga
      121 cgattatgac gaaacgctgc cggaggatat gagggctcac ccgcgttgcc ggagtcctta
      181 catttttaat gtcgcaaacg tcatggaagg cgtcgccatg tgggctaata gccaagttta
      241 ctacgacccc atccactaca tctttgctgg cggggatgat gaaactggca atttggacag
      301 gtggtttagc cactgttttg aacgtgacct aacaataagg cacttccgct tagggaaagg
      361 atttactcgc ataggttatg accttcagtg gatgaagagc gaaccggctc ttcaaatggt
      421 tgattgcccg gcctatgagc taaacaaaat gacaatagag tgggcaaaga ataacttcaa
      481 tccaattctt aaaagcgagc taagaaattc ccttagctcg ctatgcagaa ttgaccattt
      541 cggcgtgacg cttcggaagc cggaattgat agagtcgttt gatgccattc gggagaatga
      601 caagcgtcta ggtctttaag gctgagcttc atctgaccag aactcaggct cgacgcctgg
      661 ctcgtaaatg gactgaataa ggcagcagat tatggcacag caccgtgtgc ggaattgatt
      721 tctgcacgca aagtggatta cctgaaatga cactgtgtgc ggagccgttt ggcggcttct
      781 ggggactatc tcagcggatg ccgacaaggc cctgaacgga ttggatgagc ttctcggagt
      841 cgtagccgac gccgtctttg aagacgatct cgaccttctc taggtcggcg atgttgaccg
      901 cggggttgcc acgcacgacc atcaggtcgg cctgcttgcc gggggcgacg gagcctatgc
      961 gcgcgtcctc gccgaggaac ttcgcgccgt tcagggtggc gatcttgatt gcctccacgg
     1021 gcgtgaagcc cgcctcgacg agaagctgga cttctcgcag gtcgccgaag cccgcgacga
     1081 cgccgccgtt gcccgtcggg tcgagccccg cgatgagaag ccctcccgcg cgcacgaacg
     1141 cgcgctcgaa gtccatcgcc ttgcgcagaa gcgcgaggaa gtccggccct ccggggacgc
     1201 gcgcacgcgc ctgaaggtat cgcacgcgcg cgtccaccga catcaccccc aacacgcgcg
     1261 ggttgagcag cgcgcccgcg gcgcctatgc cgctctgggc gagcggggcg ccgccggcct
     1321 cgaagacggg gagcgtcgag gtgacggcga cgttcttcgc caccagcgtg cggatcgtct
     1381 cctgcgcggc ggggccgttt atgtctagct gccgcaggct cgcgctgacg gcggcgcccg
     1441 gcgggcattg gtcgggcttt ttgtcgggga cgaactcgga gtcggcgaac aggccgtgct
     1501 cgaggttgtc tatgcctatc tcggcggcct cgcgatagcc gattgagcag aggtggccgg
     1561 tgactttcag cccgcgcctg tgcgcctcct cgaccaccgc gcgcagctct tcgcgcgtga
     1621 tgttcatgta ggctttgaaa gaggtcgcgc ccgcgtcggc ccagtagttg accatgcggc
     1681 gcgcgtcctc ggggcccgtg agctgccgca tgacgggcgt gaacgcgccg gggccttcga
     1741 ggtacggcgc cgtcacgtgc atcttcggcc ctatcatccg gccggagtct atgagccgct
     1801 taatctccaa atccgtgtag ggcgcgacgc tgcccgtggt gcgtatggtc gtgacgccga
     1861 gcgccaggta gaggcgcggg aagctcgtgc ccatgttcga gtacatcggc ggcgacccgc
     1921 ccatcgggaa gaagaggtgg ttgtgcatgc cgacgaggcc gggcagaacc gtgtagcccg
     1981 cgaggtcgag cacctgcgcg cccgcggccg gtcgcgccga ggcgctcggc ccaaccgact
     2041 gaatcttgcc gccgctgatg acaacggtct gatcttcgag cggcgcggcg cccgtcccgt
     2101 caatcacgcg cacgtgcgcg agcacgaccg tcggcgcttc gacgcggacg aactgctggc
     2161 ggtcgggcga ctgcgcgaag gcggcggcgg cgaggcagaa gaggaggaga agagcgggga
     2221 gctttgtctt catcatttcg gctgtccttt acgtgtgacg gggtttaccg gcgcgacaaa
     2281 ataatagtgc cgcgcccgcc gcgggggaag ctcggccggg ccggctcgtc cctgatgctt
     2341 acaaaaacgg cctcccgcca tcgtttgctc tcgacgcgcg cgggaggcaa tatactccct
     2401 gagaagtctg ctacggctac ggagaataac ctcgtgagga agctcgtcat cgcacttctg
     2461 ttcgtcttcg ccgtcgcgtc gggcgcggcc tcggcgcagg agcctgcgcg gaagcaagcc
     2521 gcgcccccga gccctcccca gcccgccctg agcgaggacg tcacggacgc gcgcctgcgc
     2581 gccctgttcg acgcggcgcg cgaggcgatt gcgggcatgc gcttcgacga ggcgctgcgg
     2641 ctcaccgaac agggcctcgc agccgcgccg aaccagccct ccttctggct caaccgcgcg
     2701 cacgcgctct acgcgcgcgg cgcggcgacg tacaacaggt tctaccgctc gaaggaggag
     2761 gcggagagga aggccgggct cgaagcctca cggcgcgact tccgtgacgc gctcgcggcc
     2821 gcgacgcggg ggctcgcgct catagacgac taccagcctt ccgacgacga ggcgctgcgc
     2881 acctccctgg cggcgctcag gcgcgcggcg ctctggcagc gcgcagagat tctgttcaca
     2941 tgcgcgacgc gcgtggacga gtcctactac ccggacgcgc tcgccgcatt cgagcagtac
     3001 gcctcggtcg agacagaccc ggcgatgagc aacgtcgcgc gctatttcaa
//
LOCUS       DASPKR010000689         5719 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1271959, whole genome shotgun sequence.
ACCESSION   DASPKR010000689 DASPKR010000000
VERSION     DASPKR010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5719)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5719
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1271959"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..2416)
                     /gene="feoB"
                     /locus_tag="VD968_18150"
     CDS             complement(179..2416)
                     /gene="feoB"
                     /locus_tag="VD968_18150"
                     /inference="COORDINATES: protein motif:HMM:TIGR00437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015093 - ferrous iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HYE16366.1"
                     /translation="MSTTLESPARAEHGPFAGAARATRQLTVALAGNPNAGKTSIFNA
                     LTGLRQKVANYPGVTVERKEGVWALGEDRPPARLIDLPGLYSLDASSLDEQIAHDVLT
                     GRMAETPAPDVVVAVVDATNLERNLYLVTQLLEINRPLVVALTMVDLAERAKLEVDAR
                     RLGEALGVAVVPVTARHKRGLEELARAVIEAADAEPPGARWRLSPHAEGEIARLSTDG
                     GPGAREAAMHDLYSDELPEDESRRAEVERARERLSRFDPRWWQEPVTARYNWIERAAA
                     GAVRGGEAGRGRPSATDRIDSVVTHRLFGPLVLLAVMMLVFQTIFSWAALPMDLIDRG
                     FGALGEAVRSGMPEGLLTDLIVDGVIAGVGGVLVFLPQILLLFFFIALLEDSGYMARA
                     AFLMDRLMRGVGLHGKAFMPLLSSFACAIPGIMATRTIENPKDRLATIMIAPFMSCSA
                     RLPVYTLMIAAFFTDRRLFGFVSVGALIILSMYLLDIAVAVCVAWVLKRTILKAPPPP
                     LVLELPPYRLPNLLNVAQTMRSRAWLFVKRAGTVILAISILLWALMTFPRSEQKPRPD
                     AVEGAAVQAVRETGVESRGEPAPETAEVTGEAAAAVGEQMRQSYAGRLGHLIEPVIAP
                     LGFDWKMGIGLIASFAARETLVSTLSIVYNVGKDADADPASLVEAVRNAKRPDGSPAW
                     TPLVAVSMMVFFVLACQCMSTVAIVRRETNSWRWPLFMVAYMLVLAYVASLVTYQGGR
                     LLGLG"
     gene            complement(2448..2756)
                     /locus_tag="VD968_18155"
     CDS             complement(2448..2756)
                     /locus_tag="VD968_18155"
                     /inference="COORDINATES: protein motif:HMM:NF015956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046914 - transition metal ion binding
                     [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0055072 - obsolete iron ion homeostasis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FeoA family protein"
                     /protein_id="HYE16367.1"
                     /translation="MSLAFVEYENAEGSTGGEKSAAGHRPVSLDRLPAGAPARVLAVR
                     GEGAVARRLMEMGVVPGAPVRVIKSAPLGDPLEIRVRNYHLALRRSEARTITVVTSDE
                     "
     gene            complement(2879..4450)
                     /locus_tag="VD968_18160"
     CDS             complement(2879..4450)
                     /locus_tag="VD968_18160"
                     /inference="COORDINATES: protein motif:HMM:NF022750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HYE16368.1"
                     /translation="MSRKKISFKYGAALAALALLCLMCSRADARRQGRATDVTASPFS
                     AAPYRAGERLTYSVSFSNFPTAAHVELLTTGRGQFHGREGFELRARVETIGVVSAALY
                     ALSNQYVTHVDPATGLPYRSQQVIREGGRAEDVTRDFNTAAGTSAIPAREARPGQAGS
                     FDFLSALFRLRALPLAPGAAYRIAVQNGDSLYDAEVRVTGRELLKTNVGSSNAIVTQV
                     RVRSDKRADDYRVRIYFTDDERHVPVLLTARHAAGEIRAELASAEILNEAPPPAAAPT
                     PTAPPVASATPIVGPPPAGPVRPEAELPFKPGEQLNFNFYLGTTPQPVGTATFQVRAR
                     ANYFNRDGLLLTSVIQTTGPGQTLFPVNDQINSYVDAASVLPFRTELNLLEGQRRARW
                     VVSSDQNGGSALFDDGTRVEVPVGTHDLLSVFYALRSFDLTPGKRSSVSLLINKRPRL
                     LNILALNRTTVALGGQPIPAVELSLATSDPDGAGMELRLWVSTDRRRLPLRLTARTPL
                     GPVRADLAIIPTALQ"
     gene            complement(4557..5294)
                     /locus_tag="VD968_18165"
     CDS             complement(4557..5294)
                     /locus_tag="VD968_18165"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYE16369.1"
                     /translation="MGVEYKAQGSGPGFVYVCGVEGTGELFYRQADDLARDHTVITFP
                     LRPRGSYGMSQLVDDLAWVVRDAGLGRATFLGESFGGLLTLAAALERPEMFERIILLN
                     TFPHFSQRARIRVGCMLFSLLPYALVKAHRTRTARHVLFSPDISDEDRRQFRERTRTV
                     PHEGYVSRMRIIRDTDLRPRLHEIKAPALVVAGTADRLLNSAGAAKVLTAGLPRSRLK
                     LLEGTGHVALLSGCVRVRDWLREFDEF"
     gene            complement(5310..>5719)
                     /gene="pyrF"
                     /locus_tag="VD968_18170"
     CDS             complement(5310..>5719)
                     /gene="pyrF"
                     /locus_tag="VD968_18170"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF012441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HYE16370.1"
                     /translation="EAARLGVGRPSLIAVTVLTSMDAAALAESGVEANHVEQQVARLA
                     RLAAESGLDGVVASPHEIRVVREAAGRGGFLVVTPGVRPASVSHDDQKRVMTPAEAVA
                     AGADFVVVGRAILRAADPLRAARDVVAEMEGAA"
BASE COUNT          913 a         1917 c         2029 g          860 t
ORIGIN      
        1 tggcaacagg ctcatcgccg ccgcagttgc cgcagccggt cgcgcacgcg ccctgccctc
       61 tgcccggacg gaacgcccgc aggcgcgcca gtgcgcggcg cgcgacgtac acgagcgcgc
      121 cgaggacgat caagccgacc gctatctcct gccagcccac ggcgaaaaac ctcttaacct
      181 aaccgagccc gagcagccgc ccgccctggt acgtcacgag cgaggcgacg taggcaagca
      241 ccagcatgta ggcgaccata aacagcggcc agcgccacga gttcgtctcg cgcctgacga
      301 tggcaactgt ggacatgcac tggcaggcca gcacgaagaa gaccatcatc gagacggcga
      361 cgagcggcgt ccacgcgggc gacccgtcgg gccgcttcgc gttccttacg gcctcgacga
      421 gcgaggcggg atcggcgtcg gcgtccttgc cgacgttata gacgatgctc agggttgaga
      481 cgagcgtctc tcgcgcggcg aacgacgcga tgaggccgat tcccatcttc cagtcgaagc
      541 cgagcggggc gatgacgggc tcgattaagt ggccgagccg tcccgcgtag ctctgccgca
      601 tctgctcgcc gacggccgcg gccgcctcgc ccgtgacttc ggccgtctcg ggcgccggct
      661 ctcccctcga ctccacaccc gtctcacgca cggcctgcac ggccgcgccc tctacagcgt
      721 ccgggcgcgg cttctgctcc gagcgcggga aggtcatgag cgcccacagc agaatcgaga
      781 tggctagtat caccgtgccg gcgcgcttga cgaagagcca cgcgcgagag cgcatcgtct
      841 gcgcgacgtt cagaaggttc ggcaggcggt agggcgggag ctccagcacg agcggcggcg
      901 gcggcgcctt cagtatcgtg cgcttgagaa cccacgcgac gcagacagcg accgcgatgt
      961 cgagcaggta catcgagagg attatgagcg cgccgacgga gacgaagccg aacagccgtc
     1021 tgtccgtgaa gaaggccgcg atcataagcg tatagaccgg cagccgcgcc gagcacgaca
     1081 tgaacggcgc tatcattatc gtcgccaggc ggtctttcgg gttctcgatg gtgcgcgtcg
     1141 ccatgatgcc gggtatggcg cacgcgaagc tcgacagcag cggcatgaac gccttgccgt
     1201 gcaggccaac gccgcgcatc agcctgtcca tcaggaaagc cgcccgcgcc atgtagccgc
     1261 tgtcttccag aagcgctatg aagaagaaca ggaggagtat ctgcggcagg aagacgagca
     1321 cgccgcccac gccggctatc acgccgtcaa caatcaagtc cgtcagcagg ccctcgggca
     1381 tccccgagcg cacggcctcg cccagcgcgc cgaagccgcg gtctatcaag tccatcggca
     1441 gcgccgccca agagaagatg gtctgaaaga ccagcatcat cacggccaga agcaccagcg
     1501 ggccgaagag cctgtgcgtc acgaccgaat caatgcggtc tgtcgcgctc ggccgtccgc
     1561 gcccggcctc gccgccgcgg acggcccccg ccgcggcgcg ctcgatccag ttgtagcggg
     1621 ccgtcaccgg ctcctgccac caccgagggt cgaagcgcga gagccgctcg cgcgcacgct
     1681 cgacctcggc gcggcgcgac tcgtcttcgg gcagttcgtc cgagtaaagg tcatgcatgg
     1741 cggcctcgcg cgcgcccggc ccgccgtcgg ttgagagccg cgctatctcg ccctccgcgt
     1801 gcggcgaaag gcgccagcgc gcgcccggcg gctccgcgtc ggcggcctcg atgacggcgc
     1861 gggcgagctc ttctagaccc cgcttgtgcc gggccgtgac tgggacgacc gcgactccga
     1921 gcgcctcgcc gaggcgccgc gcgtcaacct cgagcttcgc gcgctccgcg aggtcaacca
     1981 tcgttagcgc gacgacgagg gggcggttga tttcgaggag ctgcgtgacg aggtagaggt
     2041 tccgttctag gttcgtcgcg tccacgacgg ccacgaccac gtccggggcg ggcgtctccg
     2101 ccatgcggcc cgtcagaacg tcgtgcgcta tctgctcgtc gagcgacgag gcgtcgaggc
     2161 tgtagaggcc gggcaggtct atgaggcggg cgggcgggcg gtcttcgccg agcgcccaga
     2221 cgccctcctt gcgctcgacc gtgacgccgg ggtagttcgc gaccttctgc cggagccccg
     2281 tgagcgcgtt gaagatgctc gtcttacccg cgttggggtt gcccgccaga gccacggtca
     2341 actggcgagt ggcgcgcgca gcccccgcga aggggccgtg ttccgcgcgg gcgggggatt
     2401 caagggtggt gctcataagg aagtgatgag tgatgagtag gaagctgtca ctcgtcactc
     2461 gtcactacgg taatggttcg cgcctcgctg cggcggaggg cgaggtggta gttgcgcacg
     2521 cggatttcga gcgggtcgcc caagggcgcg gactttatca cgcgcacggg cgcgccgggg
     2581 acgacgccca tctccatcag cctccgcgcg accgcgccct cgcccctgac ggccagcacg
     2641 cgcgccgggg cgcccgccgg caggcggtcg agcgagacgg ggcggtggcc ggcggcggat
     2701 ttctcgccgc ccgtggaacc ctccgcgttc tcgtactcta cgaaggcaag gctcatattt
     2761 cgtcaccgac tttatgaatg ttgcggccgc ggcctgctga ccagaattac tatactctcg
     2821 ttgaaaatag atttcaattt catctgaggc ggagggcagg gtggccgccg ccccggcttt
     2881 actgaagggc tgtggggatt atcgccaagt ccgcgcggac ggggccgagc ggggtgcgcg
     2941 cggtcaggcg gaggggaagg cggcggcggt cggtgctgac ccataggcgc agctccatgc
     3001 cggccccgtc ggggtcgctc gtcgcgagcg aaagctcaac cgcgggtatc ggctggccgc
     3061 ccagcgcgac cgtcgtgcgg ttcagggcga gaatgtttag caggcgcggg cgcttattga
     3121 tgaggagcga gacggagctg cgcttgcccg gcgttaggtc gaaggagcgc agcgcgtaga
     3181 agacggagag caggtcgtgc gtgcctacgg ggacttcgac gcgcgtgccg tcgtcgaaga
     3241 gggcgctgcc gccgttctgg tcggacgata cgacccatcg ggcgcggcgc tggccttcga
     3301 gcaggttaag ctcggtgcgg aacggaagca ccgacgcagc gtcaacgtag gagttgatct
     3361 gatcgttgac ggggaagagc gtctggcccg gccccgtagt ctgtatgacg gaggtgagca
     3421 gcaggccgtc gcggttgaag tagtttgcgc gcgcgcgcac ctggaacgtc gccgtgccga
     3481 ctggctgcgg cgtcgtgccg aggtagaagt tgaagttgag ctgctcgccg ggcttgaagg
     3541 gcagctcggc ctccgggcgc acagggccgg ctggcggggg gccgactatc ggcgtcgcgc
     3601 tggcgacggg gggcgctgtg ggcgtgggcg cggcggcggg cggcggagct tcgttgagaa
     3661 tctcggcgct cgcaagctct gcgcgaatct cgcccgcggc gtggcgcgcg gtcaggagga
     3721 ctggcacgtg ccgctcgtca tcggtgaagt aaatccgcac gcggtagtcg tcggcgcgct
     3781 tgtcggagcg cacgcgaacc tgcgtgacta ttgcgttcga cgacccgacg ttcgtcttga
     3841 gaagctcgcg ccccgtgacc ctcacctcgg cgtcgtagag cgagtcgccg ttctggacgg
     3901 cgatgcggta ggctgcgccg ggggcgagcg gcagggcgcg caggcggaag agggcggaga
     3961 ggaagtcgaa ggagccggcc tggccgggcc gggcctcgcg cgccggaatg gcggaggtgc
     4021 cggctgccgt gttgaagtcg cgcgttacgt cctcggcccg cccgccttcg cgtatgacct
     4081 gctgcgagcg gtagggcagg cccgtcgcag ggtcaacgtg cgtgacgtac tggttgctga
     4141 gcgcgtagag cgcggcgctg acgacgccta tggtctcgac gcgcgcgcgg agctcgaagc
     4201 cctcgcgccc atggaactgt ccgcgccccg tcgtgagcag ctcgacgtgg gcggctgtcg
     4261 ggaagttcga gaatgagacg ctgtaggtga gccgctcgcc ggcgcggtag ggcgcggccg
     4321 agaaggggct ggcggtcacg tccgtcgcgc gcccctgccg cctcgcgtcg gcccgcgagc
     4381 acatcaggca cagcagcgcg agcgccgcga gcgccgcccc gtatttaaac gaaatctttt
     4441 tccggctcaa aaagtccctt cccccctcca acgcccgaaa gcgcgcggcc tatgcttaca
     4501 cgctagacga cgcgggcgcg ttccgcaatc agccgcgcac ataccccgca cacattctaa
     4561 aactcatcga actcgcgcag ccagtcgcgg acgcgcacgc agcccgagag cagcgcgacg
     4621 tggcccgtgc cttcgagcag cttgagacgc gagcgcggca gccccgccgt caacactttg
     4681 gccgctccgg cgctgttgag caggcggtcg gccgtgcctg cgacgacgag cgcgggcgcc
     4741 tttatctcgt gcaggcgcgg gcgcagatcc gtgtcacgta ttatgcgcat gcgcgagacg
     4801 tagccctcgt gggggacggt gcgtgtccgc tcgcggaact ggcgcctgtc ctcgtcgctt
     4861 atgtcggggc tgaagaggac gtggcgcgcc gtgcgcgtgc ggtgcgcctt tacgagcgcg
     4921 tagggcagca gcgagaagag catgcacccc acgcgaatcc tggcgcgctg cgagaagtgg
     4981 gggaaggtgt tcaggaggat tatccgctcg aacatctcgg gccgttcgag cgcggccgcg
     5041 agcgtcagga gcccgccgaa cgactctccg aggaacgtcg ctcgcccgag ccccgcgtcg
     5101 cgcacgaccc aagcgaggtc gtccacgagc tgcgacatcc cgtagctccc tcgcgggcgc
     5161 agcgggaagg taatcaccgt gtggtcgcgc gcgaggtcgt ccgcctgcct gtaaaagagc
     5221 tcgcccgtcc cctcgacccc gcagacatag acgaagccgg ggccgctgcc ctgcgcttta
     5281 tattcgacgc ccatcgctaa ctgttaacgt caggccgcgc cttccatttc cgcgactacg
     5341 tcgcgcgcgg cgcggagcgg gtctgcggcc cttagtatcg cgcggccgac gacgacgaag
     5401 tcggcgcctg cggctacagc ctcggccggt gtcatgacgc gcttctggtc gtcgtgcgac
     5461 acagaggcgg ggcgcacgcc gggcgtgacg acgaggaagc cgccccggcc cgccgcctcg
     5521 cgcacgacgc gaatctcgtg cggcgacgcg acgactccgt caaggccgct ctcggccgcg
     5581 aggcgcgcga ggcgcgcgac ctgctgttcg acatggttcg cctcgactcc cgactctgcg
     5641 agcgcggcag cgtccatgct cgtcagcacc gtgacggcga tcaggctcgg ccgcccgacc
     5701 ccgagccgcg cggcctctt
//
LOCUS       DASPKR010000690         3069 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_368328, whole genome shotgun sequence.
ACCESSION   DASPKR010000690 DASPKR010000000
VERSION     DASPKR010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3069)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3069
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368328"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..782
                     /locus_tag="VD968_18175"
     CDS             <1..782
                     /locus_tag="VD968_18175"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HYE16371.1"
                     /translation="ETRRMLGRARESGRLALVDHELRFLPARRLAREMIQGGELGQVH
                     HARFTYRADARAATDRPWDWWSDRASGGGALGAIGSHAVDTLCWLLGARVSEVFCSLA
                     THVRERPDSETGAPVPVTTDDEALLTLRLEGGAAAETATGLAAVSVVEMGRSEHAVEV
                     FGSEGALRVSGADGLWRSRRGMGEWREVEAASAPLAPGMPDTEWSRGFTVFAREIVSA
                     LREGRDAVEGAATFDDGHRTQLVLDAARLSDETGRRVSVEE"
     gene            813..1985
                     /locus_tag="VD968_18180"
     CDS             813..1985
                     /locus_tag="VD968_18180"
                     /inference="COORDINATES: protein motif:HMM:NF013413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HYE16372.1"
                     /translation="MKRKLLLALVVAAALCALAFFFVVPGLVDGGLNATLRPPPYEVS
                     GRARELHGRLFVADLHADTLLWGRGLLVRSSRGHVDLPRLIEGGVGLQFFTVVTKAPR
                     GLNYETNDSGTDNITTLVVAQRWPLRTWKSLKERALHQSRLLHEAAERSGGRLTVVRT
                     ADDLARFLERRKGEPSAVATLLGIEGAHALDADLSNLGALYDAGFRMVAPVHFFDNEW
                     GGSAHGIEKGGLTPAGRELIKRLEERRMLVDLAHASERTFDDALSVATRPVVVSHTGV
                     RGACDNNRNLTDEQVRRVAATGGLIGVGFWETATCGTDARSIARSLRHVASLVGARHA
                     ALGSDFDGAVTTPFDASGVAQVTEALLAEGFGEEEVRMIMGGNVIRLLGETLPREE"
     gene            1985..>3069
                     /locus_tag="VD968_18185"
     CDS             1985..>3069
                     /locus_tag="VD968_18185"
                     /inference="COORDINATES: protein motif:HMM:NF017215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HYE16373.1"
                     /translation="MRGTGKGSKALRVGVDTGGTFTDFVYHAPGGRAVVFKLPSTPDD
                     PSRAIVEGLRRVARETGASLRDLEVVHGTTVGTNALLERRGARAALVTTRGFEDVLVI
                     GRQARAKLYDLEWSRPEPLVADRLRFGVRERVAAGGEVLEPLEDEEIEKLARKLRRAR
                     AEAVAVCLLFSFARPEHERRVVRAVATALPGVPISASHEILPEYREFERTSTVVINAY
                     LQPLMGAYLGRLGSRAGAGRLSVMQSSGGSISARAAAREPVRTILSGPAGGVVGAGRA
                     ALDAGFPDIITFDMGGTSTDVALVAGGRLRLTNEASVAGLPVAVPVLDIHTVGAGGGS
                     IARVDAGGSLRVGPQSAGAVPGPACYGR"
BASE COUNT          408 a         1070 c         1143 g          448 t
ORIGIN      
        1 gcgagaccag gcgcatgctc ggccgcgcgc gcgagtcggg gcggctagcg ctcgtggatc
       61 acgagctgcg cttcctgccc gcgcgccgcc tcgcgcgaga gatgattcag ggcggcgagt
      121 tagggcaggt gcaccatgcg aggttcacgt accgcgccga cgctcgcgcc gcgactgacc
      181 ggccgtggga ctggtggtct gaccgcgcat cgggcggggg cgccttgggc gccatcggct
      241 cgcacgccgt ggacacgctc tgctggctcc tcggcgcgcg cgtctctgaa gtcttctgct
      301 cgctcgcgac gcacgtgcga gagcggcccg actcggagac cggcgcgccc gtcccggtca
      361 cgactgacga cgaggcgctt ctgacgctca ggctcgaagg cggcgcggcc gcggagaccg
      421 cgacggggct cgccgcggtc tcggtcgtcg agatggggcg cagcgagcac gcggtcgagg
      481 tcttcggctc cgagggcgcg ttgagggtca gtggcgccga cggcctctgg cggtcgcggc
      541 ggggcatggg cgagtggcgg gaggtcgagg ccgcgtcggc gcccttggcc cccggcatgc
      601 ccgacaccga gtggtcgcgc ggcttcacgg tcttcgcgcg cgagatagtc tcggcgctcc
      661 gcgaagggcg cgacgcggtc gagggcgccg ccacgttcga cgacggccac cgcacgcagc
      721 tcgtcctcga cgccgcgcgc ctctccgacg agaccggccg ccgcgtcagt gtggaagagt
      781 aggcctctct ctcgcttccg ccgccggctt tgatgaaaag aaagctgctt ctggccctcg
      841 tcgtcgccgc ggcgctctgc gcgctcgcgt tcttcttcgt ggtgccgggg ctggttgacg
      901 gagggttgaa cgcgacgctc aggccgccgc cgtatgaggt ctcggggagg gcgcgcgagc
      961 ttcacggccg tctcttcgtc gcagacctgc acgcggacac gctgctgtgg ggcaggggct
     1021 tgctcgtgcg ctcgtcgcgc ggccacgttg acctgccgcg gctcatagag ggcggcgtcg
     1081 gcttgcagtt cttcacggtc gtcacgaagg cgccgcgcgg gctcaactac gagacgaacg
     1141 actcggggac ggacaacatc acgaccctcg tcgtggcaca gcgctggccg ctccgaacgt
     1201 ggaagagcct caaggagcgc gcgctccacc agtcgcgcct gctacatgaa gcggccgagc
     1261 gctcgggcgg gcgactgacg gtcgtgcgga cggccgacga cctcgcgcgc ttcctcgaaa
     1321 ggcgaaaggg cgagccgagt gcggtggcca cccttctcgg catagagggc gcgcacgcct
     1381 tagacgcaga cctatcgaac ctgggcgcgc tctacgacgc cggcttccgc atggtcgcgc
     1441 ccgtccactt cttcgacaac gagtggggcg gctcggcgca cggcatcgag aagggcgggc
     1501 tcacaccggc gggcagggaa ctgataaagc gccttgaaga gcggcgcatg ctcgttgacc
     1561 tcgcgcacgc ctccgagcgc accttcgacg acgcgctctc ggtcgcgacg cggcccgtcg
     1621 tcgtctcgca cacgggcgtg cgcggcgcgt gcgacaacaa ccggaacctt acggacgagc
     1681 aggtgcggcg cgtcgccgcc acgggcggcc tgataggcgt aggcttctgg gagactgcga
     1741 cgtgcgggac agacgcgcgc tcaatcgcgc gctcgctgcg gcacgtggcg agcctcgtcg
     1801 gggcgcggca cgccgcgctc gggtctgact tcgacggggc ggtgacgacg cccttcgacg
     1861 cgagcggcgt cgcgcaagtg acggaagcgc tgctggccga gggcttcggc gaggaagagg
     1921 tgaggatgat tatgggcggg aacgtcatcc ggctgctcgg cgagacgctg ccgcgtgagg
     1981 agtgatgagg gggacgggga agggctcgaa ggctctgagg gtcggcgtgg acacgggcgg
     2041 gactttcacc gacttcgtct atcacgcgcc gggcggccgc gccgtcgtct tcaaactccc
     2101 ctcgacgccc gacgacccct ctcgcgcgat agtcgagggg ctcaggcgcg ttgcgcgcga
     2161 gacgggcgcg agcctccgcg acctcgaagt cgtccacggg acgaccgtcg gcactaacgc
     2221 cttgctcgag aggcgcggcg cgcgcgcggc gctcgtcacc acgcgcggct tcgaggacgt
     2281 gctagtgatt ggccggcagg cgcgcgccaa gctctacgac ctcgaatggt caaggcccga
     2341 gccgctcgtc gccgaccgcc ttcgcttcgg cgtgcgcgag cgcgtcgccg cgggcgggga
     2401 agtcctcgag ccgctggaag acgaagagat agagaagctc gcccgcaagc tcaggcgcgc
     2461 gcgcgccgag gcggtcgccg tctgcctgct cttctctttc gcccgccccg agcacgagag
     2521 gcgcgtcgtg cgcgccgtcg ctacggcgct gcccggcgtc cccatctccg cctcccacga
     2581 aatcctcccc gagtaccgcg agttcgagcg cacctcgacg gtcgtcatca acgcttacct
     2641 tcaaccgctg atgggcgcct acctcggccg cctcggctcg cgcgcgggcg cggggcgcct
     2701 gagcgtcatg cagtcttcgg gcgggagcat ctcggcgcgc gcggctgctc gcgagcccgt
     2761 gcggacgatt ctttcaggcc cggcgggcgg cgtcgtgggc gcgggccgcg ccgcgctcga
     2821 cgccggcttc cccgacatca tcaccttcga catgggcggc acctcgaccg acgtggcgct
     2881 cgtcgcgggg gggcgcctgc gcctgacgaa cgaggcgagc gtggcggggc tgcccgtggc
     2941 cgtgcccgtg ctcgacatac acaccgtcgg cgcgggcggc ggctccatcg cgcgcgtaga
     3001 cgcgggcggc tccttgcgcg tggggcctca gtcggccggc gctgtaccgg gccccgcgtg
     3061 ctacggccg
//
LOCUS       DASPKR010000691         2895 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1657525, whole genome shotgun sequence.
ACCESSION   DASPKR010000691 DASPKR010000000
VERSION     DASPKR010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2895)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2895
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1657525"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..432
                     /locus_tag="VD968_18190"
     CDS             <1..432
                     /locus_tag="VD968_18190"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HYE16374.1"
                     /translation="SLVREPQLAEDVLQETFMRIHRKLGWLREPGLFRPWAYRVATRE
                     ALRHLKRERRWAEQVRDEEALKALPAPPPREEFAPELLAALPESVGRLSPASRAVVAL
                     YYLHEMSLEETAAVLGLPLGTVKSRLSYGLEALRRQFGERG"
     gene            429..581
                     /locus_tag="VD968_18195"
     CDS             429..581
                     /locus_tag="VD968_18195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16375.1"
                     /translation="MSRGRTPAKDDEGRAGGASGSDRTFRYALTVYAVVEFVAVALFI
                     YYKLSR"
     gene            611..898
                     /locus_tag="VD968_18200"
     CDS             611..898
                     /locus_tag="VD968_18200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16376.1"
                     /translation="MSDRIDLNAVRAEALARVERGERNFRLAFFGGLAFEALFLAVFL
                     LAADFSNRTHVLILIATIGGYTVVALGLVALGAHVSRGVARVLKAVELLGG"
     gene            1238..1627
                     /locus_tag="VD968_18205"
     CDS             1238..1627
                     /locus_tag="VD968_18205"
                     /inference="COORDINATES: protein motif:HMM:NF012305.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HYE16377.1"
                     /translation="MSIKLYVGNLSYQTSSEDLRELFSAAGTVESASVVEDRDTGRSR
                     GFGFVEMATKEEAEAAIAQFNGKPFGGRNLTVNEARPREDRGGGGGGRGGYGGGGGGR
                     GGGGGRGGYGGGGGGYGGGGGNREPRW"
     gene            1763..>2895
                     /locus_tag="VD968_18210"
     CDS             1763..>2895
                     /locus_tag="VD968_18210"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HYE16378.1"
                     /translation="MEFSQLGLRPALVRRCESLGYEKPTAIQERAIPVVLTGADLIGC
                     AETGTGKTAAFLLPTIQRMSETPRPGVRLLVLAPTRELVSQIEESYRQLAPKGSAKCA
                     AVIGGASMSRQTEALRRGAAVVVATPGRLLDHVERRTVDLSQVEVLVLDEADRMLDMG
                     FLPAIRRILALLPERRQTLLFSATMSPEIEELARRTMKEPKLVEVSRRGRAAVTVEQT
                     AYPVAAESKTALLLDLLERERESENFDRVLVFTRTRRGAERLSHILLAREHKVNRIHA
                     DRTQPQREAALRGFKDGETRVLVATDIAARGIDVESVSHVINYDVPAQPEDYVHRIGR
                     TGRAGKSGRAITLVTPVEELSMRAIERLTGQSVERVVLPSFGGG"
BASE COUNT          463 a          996 c          989 g          447 t
ORIGIN      
        1 agcctcgtcc gcgagccgca gttggccgaa gacgttttgc aggagacctt catgcgcatc
       61 caccgcaagc tcggctggct gcgcgagccg gggctgttcc gcccctgggc ctaccgcgtc
      121 gcgacgcgcg aggcgctcag gcacctcaag cgcgagcggc gctgggccga gcaggttcgg
      181 gacgaggagg ctctgaaggc tctgccggcg ccgccgccgc gcgaggagtt cgcgccggag
      241 cttctggcgg cgcttcccga aagcgtcggc cgcctctcgc ccgcgagccg cgccgtcgtc
      301 gcgctctact acctgcacga gatgtcgctc gaagagacgg cggccgtgct cggcctgccg
      361 ctggggacgg tcaagtcgcg cctctcctac gggctcgaag cgctgcgcag gcagttcggg
      421 gaacggggat gagccggggt cgaactcccg cgaaggacga tgaaggccgc gccggagggg
      481 cgtcgggttc agaccggacg ttcagatacg cgctcacggt ctacgcggtc gtcgagttcg
      541 tcgccgtcgc gctcttcatc tactacaagc tttcgcgctg agcagacaca caacaaaagg
      601 aggcaatctt atgtcagaca gaatagacct caacgccgtc cgcgccgagg cgctcgcgcg
      661 tgtcgagcgc ggcgagcgaa acttccggct cgccttcttc ggcgggctcg ccttcgaggc
      721 gctgttcctc gccgtcttcc tgctcgcggc cgacttctcg aaccgcacgc acgtcctgat
      781 tctcatcgcg acgatcggcg gctacacggt cgtcgccctc ggcctcgtcg cgctcggcgc
      841 gcacgtctcc cgcggcgtgg cgcgtgtgct gaaggccgtg gagcttctgg ggggctgaaa
      901 tccggccgaa acgctcgcgc cgggccctcc cgccacgcaa aaaaaatcgg ggcgggaggg
      961 cccggccgtc gtttagacgt tgcaacttca tacagtctta gtgcatcata gctcggtcaa
     1021 ttccttctct cgcgcatcga cggtgatgcg ccccgcgcct tgaccttggc ggcggcgttt
     1081 ggatggttcg agagcaggca ctttgtaaaa cagaccggaa gccgctcttc ttcagagcac
     1141 cccagacccg agccttcgct gccaccgtct cgccgaagca aactttagat gggaagcttc
     1201 tcttgatact ccttggaagg ggagaaggta cacgtgcatg tccattaaac tttacgtcgg
     1261 caacctctcg tatcagacct ccagcgaaga cctccgcgag ctgttctcag cggcgggcac
     1321 ggtcgagtcg gcttcggtcg tcgaggatcg cgacacgggc cgctcgcgcg gcttcggttt
     1381 cgtcgaaatg gctaccaagg aagaggccga agcggccatc gcccagttca acggcaagcc
     1441 cttcggcggc cgcaacctga ccgtcaacga ggcgcggccc cgcgaggatc gcggcggcgg
     1501 cggcggtggt cgcggcggct acggcggcgg cggtggcggt cgtggcggcg gcggcggccg
     1561 cggtggttac ggcggtggcg gcggcggcta cggcggcggc ggcggcaacc gcgagccccg
     1621 ctggtaacgg ccggcgccaa ccagccagcg acactcttaa gggaagcgcc tctggcaaga
     1681 actgaaagcc gggggcgctt ctccgatttt tgacagacgg cccgcgactg acgtaaggcg
     1741 cgcggccgca gtaaggaact gaatggaatt ttctcaactc ggactccggc ccgcgctcgt
     1801 gcgccgctgc gagtccctcg gctatgaaaa gccgacagcg attcaagagc gcgcgatacc
     1861 cgtcgtgctg accggcgccg acctcatcgg ctgcgccgag accggcacgg gcaagaccgc
     1921 ggccttcctc ctcccgacga ttcagaggat gagcgagacc ccgcgccccg gcgtgcgcct
     1981 gctcgtgctc gcgccgacgc gcgagcttgt cagtcagatc gaagagagct accggcagct
     2041 cgccccgaag ggcagcgcga aatgcgcggc cgtcatcggc ggcgcgagca tgtcgcggca
     2101 gaccgaggcg ctgcgccgcg gcgcggccgt cgtcgtcgcc acgccgggcc gcctgctcga
     2161 ccacgtcgag cggcgcaccg tagacctctc gcaggtcgaa gtcctcgtcc tcgacgaggc
     2221 cgaccggatg ctcgacatgg gcttcctgcc cgccatccgg cgcatactcg ccctgctgcc
     2281 cgagcggcgc cagacgctcc tcttctcggc gacgatgtcg cccgagattg aggaactcgc
     2341 gcggcggacg atgaaggagc cgaagctggt cgaggtcagc cggcgcgggc gcgcggccgt
     2401 gaccgtcgag cagacggcct accccgtggc cgccgagtcg aagacggcgc tgctcttaga
     2461 ccttctggag cgcgagcgcg agagcgaaaa cttcgaccgc gtcctcgtct tcacgcgcac
     2521 gcggcgcggg gccgaacgcc tctcgcacat cctcctcgcg cgcgagcaca aggtgaaccg
     2581 catccacgcc gaccgcacgc agccgcagag ggaggcggcg ctgcgcgggt tcaaggacgg
     2641 ggagacgcgc gtcctcgtcg ccacggacat cgctgcgcgc ggcattgacg tggagtccgt
     2701 ctcgcacgtc atcaactacg acgtgcccgc gcagcccgag gactacgtcc accgcatcgg
     2761 gcggacgggg cgtgcgggca agagcgggcg cgctattacg ctcgtcacgc ccgtagagga
     2821 actctcgatg cgcgccatcg agcgcctgac gggtcagtcg gtcgagcgcg tcgtgctccc
     2881 gtcgttcggc ggcgg
//
LOCUS       DASPKR010000692         4951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1406831, whole genome shotgun sequence.
ACCESSION   DASPKR010000692 DASPKR010000000
VERSION     DASPKR010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4951)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4951
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1406831"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1316
                     /gene="der"
                     /locus_tag="VD968_18215"
     CDS             <1..1316
                     /gene="der"
                     /locus_tag="VD968_18215"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HYE16379.1"
                     /translation="VGERRSIVGDEPGITRDRIYGETEWAGRRFSVVDTGGIVPDETA
                     VIPANILKQAEFAIREAVALVWVVDARAGMTPLDEELARLLRGTGKTVLIAANKTDVQ
                     KLEAHAAEFHRFGFADVLPISAETGNGVAELLDALAERLPRDGAAGPGAEETEAARRE
                     VRLAIVGRPNVGKSSILNRLLGEERVIVSPVAGTTRDAVDTVLESEGRPFRLIDTAGI
                     RRKGKTDEMAEKLSVVMARRSLERADVAVVVIDAVEGVAALDANIAGYAVEAGCSIIL
                     AVNKWDAVPGKETGTPAAFERELRLKMKFLEWAPVLTVSARTGQRVERILPLAVRADE
                     ARNRRVPTSQLNAFFERTMASGRAPTAPAPVKGGQSRLHVQYLTQVGVRPPAFVVFTA
                     GGRPGLHFSFERFLQNRLREEFDFFATPLRIIERHKKKPRQEARG"
     gene            1343..2533
                     /gene="tgt"
                     /locus_tag="VD968_18220"
     CDS             1343..2533
                     /gene="tgt"
                     /locus_tag="VD968_18220"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: protein motif:HMM:TIGR00449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HYE16380.1"
                     /translation="MAAKTTEALGWDVLARDGEARAGLIRTRRGAIETPVFMPVGTLG
                     TVKGVRFEELEAPDLDARIILANTYHLWLRPGAGVVRACGGLHRFVGWERAILTDSGG
                     FQVFSLSDRRRVSEEGVEFSSHVDGRACFLSPEVSMEVQAALGSDIIMAFDECPPGRS
                     SHEEARASMELTARWAARSRRRFDELQREGEHGPARGVENGVSGAQALFGIVQGAAFH
                     DLRRESLARTVEVGFDGYAIGGLSVGEEKPVMYEVVERLAPEMPAGRPRYLMGVGTPE
                     DLIECVARGVDMFDCVIPTRNGRNGQAFTSRGRLNIKNARWATGTGPLDEACSCSVCR
                     RHSRAYLRHLHVTGEMLAAVLLSHHNIAFFLDTMRRVRQAIRSGEFTRFRREFLERTG
                     SGVE"
     gene            2675..2989
                     /gene="yajC"
                     /locus_tag="VD968_18225"
     CDS             2675..2989
                     /gene="yajC"
                     /locus_tag="VD968_18225"
                     /inference="COORDINATES: protein motif:HMM:TIGR00739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HYE16381.1"
                     /translation="MTNFAPILLQGGLGNLFAGIMPFLLIFGVFYFLIIVPQRRRQRE
                     LQAMISALKAGDRVVTTGGIIATVTAVRERSLLVRSADKSILEITRSAVAGMHGDDEK
                     AG"
     gene            3121..4824
                     /gene="secD"
                     /locus_tag="VD968_18230"
     CDS             3121..4824
                     /gene="secD"
                     /locus_tag="VD968_18230"
                     /inference="COORDINATES: protein motif:HMM:TIGR01129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HYE16382.1"
                     /translation="MKKHLLQRVIIIAVVTLVSLWAVIGPRRVPAAQDFTLRGINNTL
                     RENINLGLDLRGGSHLVMQVKVEEYLQRITENVAVGVQRAAQEAGYNVREVRPEISGQ
                     NFRIVLEAADGSKIQEMRDQLPQKVNDFDTSVWDSKVSGNTITWEMREAAKDALGDRA
                     VEDALKIIDTRINAIGVAEPTIQRHGAENSRQILLQMPGVDDPERVKKMLAGASILEL
                     MKVVSPPSPAPMQTYPTEEAARQSLGGTVPTNRRVLPYMERDEPTAAADNQGQEKSNE
                     PTAWVVVESPAVIDGSELRSADAVGQQGTDEGHLINFTLKPTGAQKFGAWTAANVNQY
                     MAIVLDGKVQSAPFIKSQITDSGQITGNFTKESAGDLALTLRSGALPARLVYLEERTV
                     GPSLGQDSIRAGVTASLVGLLLVVSFMVFYYRGSGVNAVIALLLNMILTLAALVVFDA
                     ALTLPGIAGIILSIGMAVDSNVLIFERIREELRTGKTVASSVDQGFARAFVTIVDTHV
                     TTIVAALFLFVFGTTLIRGFAVTLVLSLVANLFSAVYVSRTIFIWVLGRKGRRAESLS
                     I"
BASE COUNT          837 a         1654 c         1675 g          785 t
ORIGIN      
        1 tggtcggcga gcgccgctcc atcgtgggcg acgagccggg cattacgcgc gaccgcatct
       61 acggcgagac cgagtgggca ggccgccgct tctccgtcgt ggacaccggc ggcatcgtgc
      121 ctgacgagac cgccgtcata cccgccaaca tactcaagca ggccgagttc gccatacgcg
      181 aggcggtcgc cctcgtgtgg gtcgtggacg cgcgcgccgg gatgacacct ctcgacgagg
      241 agttggcccg gctgctgcgc gggacgggca agaccgtcct gatagccgcc aacaagaccg
      301 acgtgcagaa gctcgaagct cacgccgccg agttccaccg cttcggcttc gcggacgttc
      361 tccccatctc ggccgagacg gggaacggcg ttgccgagct gctcgacgcg ctcgccgagc
      421 ggctgccgcg agacggcgcc gccgggccgg gcgcggagga gacggaggcg gcacggaggg
      481 aggttcgcct cgcgattgtc ggccggccga acgttgggaa gtcttcgatt ctcaaccgcc
      541 tgctcggcga ggagcgcgtc atcgtctcgc ccgtcgcggg gactacgcgc gacgccgttg
      601 acacggtgct tgagagcgag ggccggccct tccgcctgat tgacacggcc ggcatacgcc
      661 gcaagggcaa gaccgacgag atggcagaga agctctcggt cgtcatggcg cgcagaagtc
      721 tagagcgcgc cgacgtcgcc gtcgtcgtca ttgacgccgt cgagggcgtc gcggcgctag
      781 acgccaacat cgccggctac gcggtagagg ccggctgctc catcatcctc gccgtcaaca
      841 agtgggacgc agtccccggc aaggagacgg ggacgcccgc cgccttcgag cgcgagctgc
      901 gcctgaagat gaagtttctg gagtgggcgc cggtgctgac cgtctcggca aggacggggc
      961 agagggtcga gcgcatcctg ccgctcgccg tgcgcgccga cgaggcgcgc aaccgccggg
     1021 tgccgacctc gcagctcaac gccttcttcg agcgcacaat ggcctcgggc cgggcgccga
     1081 ccgcgcccgc gccggtcaag ggcgggcagt cgcgcctgca cgtccagtac ctcacgcagg
     1141 tcggcgtgcg gccccccgcc ttcgttgtct tcacggcggg cgggaggccc ggccttcact
     1201 tctccttcga gcgcttcctg caaaaccgcc tgcgcgagga gttcgacttc ttcgccacgc
     1261 ccctgcgtat catcgagcgc cacaagaaaa agccgaggca ggaggcgcgg ggctgacccc
     1321 ggcaaagtta ctgatggaga gtttggcggc aaagactacg gaggcgctgg gctgggacgt
     1381 gctcgcgcgc gacggcgagg cgcgcgcggg gctcattcgc acccgccgcg gcgctataga
     1441 gacgcccgtc ttcatgcccg tcgggacgct cggcacagtc aagggcgtgc gcttcgagga
     1501 gctcgaggcg cccgacctgg atgcccgcat catcctcgca aacacctacc acctgtggct
     1561 ccggcccggc gcgggggtgg tgcgcgcgtg cggcgggctc caccgcttcg tcggctggga
     1621 gcgagcgata ctgacagact cgggcgggtt ccaggtcttc agcctgagcg accggaggcg
     1681 cgtctcggag gagggcgtcg agttcagctc gcacgttgac ggccgcgcct gcttcctctc
     1741 gcccgaggtc tcgatggagg ttcaggcggc gctcggctcc gacatcatca tggccttcga
     1801 cgaatgcccg cccggccgct cttcgcacga ggaggcgcgc gcctcgatgg aattgacggc
     1861 ccgctgggca gcgcgctcgc gccgtaggtt cgacgagttg cagcgcgagg gcgagcatgg
     1921 cccggcgcgc ggagtcgaga acggagtcag cggcgcgcag gcgctcttcg gcatcgtgca
     1981 gggcgcggcc ttccacgacc tgcggcgcga gagcctcgcg cgcaccgtcg aggtcggctt
     2041 cgacggctac gccatcgggg ggctgagcgt cggcgaggag aagcccgtca tgtacgaggt
     2101 ggtcgagcgg ctcgcgcccg agatgcccgc cgggcgcccg cgctacctga tgggcgtcgg
     2161 cacgcccgaa gacttaatcg agtgcgtggc gcgcggcgtt gacatgttcg attgcgtcat
     2221 ccccacgcgc aacggtcgca acggtcaggc gttcacctcg cgggggcggc tcaacattaa
     2281 gaacgcgcgc tgggccacgg gcaccggccc gctagacgag gcgtgctcgt gctcggtctg
     2341 ccgccggcac tcgcgcgcct acctccgaca cctgcacgtg acgggcgaga tgcttgcggc
     2401 cgtcctgctc tcgcaccaca acatagcgtt cttccttgac accatgaggc gcgtgaggca
     2461 agctatccgg tctggcgaat tcacgcgatt tcggcgggag ttccttgagc gtacaggctc
     2521 cggcgtcgaa tgacccgacc ggcccgaccg gcgcgccaac acttccagaa aacaggcgat
     2581 tttcgcacga aggagcgcac gcttccggcc gcggccgcgc gcgtcagcgc gcccgagccc
     2641 agaagctgaa accgagactt gcaacggaca accgatgact aactttgccc cgattctatt
     2701 gcagggcgga ctgggcaatc tcttcgccgg gataatgccc ttcctgctca tcttcggcgt
     2761 cttctacttc ctgattatcg tcccgcagcg ccgccgccag cgagagcttc aggcgatgat
     2821 ctcggccctc aaggcgggcg accgcgtcgt gacgaccggc ggcatcatag ccaccgtgac
     2881 tgccgtccgc gagcgctcgc tcctcgtgcg cagcgccgac aagtcaatac ttgaaattac
     2941 gcgctcggcc gtcgccggca tgcacggcga cgacgagaag gcgggttgaa gcgatcagcg
     3001 gtcagccgcc gcccttcggc tcttcgcccg gcgaagactt aaaggagagt tgggtggccg
     3061 aatgctgatt aacaagaaaa agctgaccgc tgaaagctga ttgccgacag ctttactctt
     3121 atgaaaaagc accttctgca acgcgtcatc atcatcgccg tagtcacgct ggtctcgctc
     3181 tgggccgtca ttgggccgcg cagggtgccg gccgcgcagg acttcacgct gcgcggcatc
     3241 aacaacacgc tgcgcgagaa catcaacctc ggcttagacc tgcgcggcgg ctcgcacctc
     3301 gtcatgcagg tgaaggtcga ggagtacctg caaaggatca cggagaacgt ggccgtcggc
     3361 gtgcagaggg ccgcgcagga agcgggctac aacgtgcgcg aggtgcggcc cgaaatctcc
     3421 gggcagaact tccgcatcgt gctcgaggcc gcggacggct cgaagattca ggagatgcgc
     3481 gaccagttgc cgcagaaggt caacgacttc gacacgagcg tctgggactc caaggtgagc
     3541 ggcaacacca ttacgtggga gatgcgggag gcggcgaagg acgcgctcgg cgaccgcgcc
     3601 gtcgaggacg ccctcaagat catagacacg cgcatcaacg caatcggcgt cgccgagccg
     3661 accatacaga ggcacggcgc cgagaactcg cgccagatac tattgcagat gcccggcgtt
     3721 gacgaccccg agcgagtcaa gaagatgctc gccggcgcct ccatcctcga gctgatgaag
     3781 gtcgtgagcc cgcccagccc cgcgccgatg cagacctacc cgaccgagga ggcggcgcgc
     3841 cagtcgctgg gcggcacggt ccctacgaac cgccgcgttc tcccctacat ggagcgcgac
     3901 gagccgacgg ccgccgccga caaccagggg caggagaagt cgaacgagcc gaccgcgtgg
     3961 gtggtcgtcg agtcgccggc cgtcattgac gggagcgagc tccgaagcgc cgacgccgtc
     4021 ggccaacagg ggactgacga gggccacctc atcaacttca cactgaagcc gacgggcgcg
     4081 cagaagttcg gcgcgtggac cgcggcgaac gtcaaccagt acatggctat cgtgctcgac
     4141 ggcaaggtgc agtcggcgcc cttcatcaag tcgcagatca cggactcggg ccagataacg
     4201 ggcaacttca cgaaggagtc ggcgggcgac ctcgcgctca cgctccgctc gggcgcgctg
     4261 ccggcccgcc tcgtttatct ggaggagcga accgtcggcc cgagcctcgg ccaggactcg
     4321 ataagggcgg gcgtgacggc ctcgctcgtc ggcctgctgc tcgtcgtgag cttcatggtc
     4381 ttctactacc gcggctccgg cgtcaacgcc gtcatagcgc tgctcctgaa catgattttg
     4441 acgctggcgg cgctcgtcgt cttcgacgcg gcgctgacgc tgccgggcat cgccggcatc
     4501 atcctctcga taggcatggc cgttgactcg aacgtgctca tattcgagcg catacgcgag
     4561 gagctgcgga cgggtaagac cgtcgcctcc tccgttgacc aggggttcgc gcgcgccttc
     4621 gtcaccatcg ttgacacgca cgtgacgacc atcgtcgccg cgctcttcct cttcgtcttc
     4681 ggcaccacgc tgatacgcgg cttcgccgtg acgctggtgc tgagcctcgt ggcgaacctc
     4741 ttctcggccg tgtacgtttc gcgcacaatc ttcatatggg tgctcggccg caaggggcgc
     4801 cgcgcggagt cgctgagtat ttaagacagt tgtcgggtgt aaagtcatga ttcgcatact
     4861 ggaagacgta aacgttgact ggctgggcaa gcggcgctgg cttgtcgggc tctcggtggc
     4921 cttgatgctt gcgggcctcg gctcggccgt g
//
LOCUS       DASPKR010000693         2767 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1784995, whole genome shotgun sequence.
ACCESSION   DASPKR010000693 DASPKR010000000
VERSION     DASPKR010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2767)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1784995"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..441
                     /locus_tag="VD968_18235"
     CDS             <1..441
                     /locus_tag="VD968_18235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16383.1"
                     /translation="EREVIRECVPWTRRVSERKTTRGGAEIDLIGHVRRRRPELVLKP
                     NDDYGGAGVVIGPRASESEWDDALEAALAADYVVQEAVELRTEEFPVFDDERWALQPV
                     YVDTNPFLFRGRVEGAMVRLSDSPVVNVTSGGGEAGFFVIEGEA"
     gene            complement(443..820)
                     /locus_tag="VD968_18240"
     CDS             complement(443..820)
                     /locus_tag="VD968_18240"
                     /inference="COORDINATES: protein motif:HMM:NF012601.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HYE16384.1"
                     /translation="MTNEELIERARGVVRPRQIAHGCTVGDVGCALLTEGGSVHVGVC
                     IDAPGGMGFCAEHSAIAAMITHGEQAIRKIVAVLGDGTVLPPCGRCREFMRQVGAGNM
                     DGTEVVLGREESVRLRDLLPRPW"
     gene            945..2003
                     /locus_tag="VD968_18245"
     CDS             945..2003
                     /locus_tag="VD968_18245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16385.1"
                     /translation="MPNPTTVVYVAVACLAAAVVLVYLFWWAVSRYKVWKARPRPVRA
                     LRKSLWRDPGEVERLDFRGGPGGPDGAPSPPFQFVEEHGTGSNPCLSVRDARGRVWRA
                     KWGDEVKSETFAVRFVWAAGYHAEAAYFVPEGEIVGAKDLGRARACVGEDCRFRDARF
                     ELDEPGVRKLFDEHGWSWDDNPFEGTRELAGLKILLMLLSNWDNKDVRDVARGSNMAV
                     FEHREEDGALEARYLIIDWGATMGRWGMPGTRQKWDCEAFAAQSAEFVLGVEGGVVSW
                     GYTGQRTDDAVRGITVEDVRWLYSYVGRITDSQLRDGLLASGATDEEADCFTRALRDR
                     IEQLRLVAEQGDDFRPAS"
     gene            complement(2000..2557)
                     /locus_tag="VD968_18250"
     CDS             complement(2000..2557)
                     /locus_tag="VD968_18250"
                     /inference="COORDINATES: protein motif:HMM:NF015142.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16386.1"
                     /translation="MWIIQWAKSSTWRNEFDMPIRNFARVTGAVYRGAFPSEEGYRAL
                     VAKLGVRRVLSLTDRAADDESAKALRAGMRGWWHIPFHDREAPDPVLVREWLAHVRTA
                     TPEDPVYTHCMGGRHRTGVLIAVLRVTDQGWTKQEAFREMLRYGWYDARGHRPLREWF
                     ERDFDPADFAATAPADKEIPTKERS"
     gene            complement(2548..2706)
                     /locus_tag="VD968_18255"
     CDS             complement(2548..2706)
                     /locus_tag="VD968_18255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16387.1"
                     /translation="MSRTEGMRYAMAIEKGELDYSAHLHDLPGRVATGKTLEDVKRRA
                     PGVFWPCG"
BASE COUNT          412 a          939 c          968 g          448 t
ORIGIN      
        1 gagagggaag tcatacgcga gtgcgtgccg tggactcgcc gcgtctcgga gcgcaagacg
       61 acgcgcgggg gcgcggagat agatttaatc gggcacgtga ggcggcgccg cccggagctc
      121 gtcctcaagc cgaacgacga ctacggcggc gcgggcgtcg tcataggccc gcgggcgagc
      181 gagtcggagt gggacgacgc actggaggcc gcgctcgcgg ccgactacgt cgtgcaggag
      241 gcggtcgagc tccgcaccga ggagttcccc gtcttcgacg acgagcgctg ggccttgcag
      301 cccgtgtacg ttgacacgaa ccccttcctc ttccgcggcc gggtagaggg cgcgatggtt
      361 cgcctctccg actcgcctgt cgtcaacgtc acctcgggcg gaggcgaggc cggcttcttc
      421 gtcatcgagg gcgaggcctg agtcaccagg ggcggggcag gaggtcgcgc agcctcacgg
      481 actcttcgcg gccgagcacg acttccgtgc cgtccatgtt gcccgcgccg acctgccgca
      541 tgaactccct gcaacgcccg cacggcggca gaaccgtccc gtccccaagc accgccacaa
      601 tctttcggat ggcttgctcg ccgtgtgtaa tcatcgccgc gatggcgctg tgctcggcgc
      661 agaagcccat gccgccgggc gcgtcaatgc agacgccgac gtgaacgctc ccgccttccg
      721 tcaggagcgc gcagcccacg tcgcccaccg tgcagccgtg cgctatctgc ctcggtcgga
      781 cgaccccgcg cgccctctcg attaactctt cgttggtcat ggccgcctcc gccagaaact
      841 ctaacgtcgc gcgctcgcgg cgcgcaaacc tgaacttaaa tgccgggccg gcgcgtcacc
      901 ccgaagccac ggccggcggg cttcgtgtat agtaggcggc gaggatgccc aaccccacga
      961 cagtcgtgta cgtcgcggtc gcctgcttgg cggcggctgt agtcctcgtc tatctcttct
     1021 ggtgggccgt ctctcggtac aaagtctgga aggcgcggcc gcgccccgtg cgggcgctga
     1081 ggaagagcct gtggcgcgac cccggcgagg tcgagcggct cgacttccgc ggcggccccg
     1141 gcggcccgga cggcgcgccc tccccgcctt ttcaattcgt cgaagagcac gggacgggct
     1201 cgaacccctg tctctcggtg cgcgacgcgc gcggccgcgt gtggcgagcg aagtggggcg
     1261 acgaggtcaa gagcgagacc ttcgccgtgc gcttcgtgtg ggccgccggc taccacgcag
     1321 aggccgccta cttcgtcccc gagggcgaga tagtcggcgc gaaggatttg gggcgggcgc
     1381 gcgcgtgcgt cggcgaggac tgccgcttcc gcgacgcgcg cttcgaactg gacgagcccg
     1441 gcgtgcgaaa gctcttcgac gagcacggct ggtcgtggga tgacaacccg ttcgagggga
     1501 cgagggagct ggcgggcctg aaaatcctcc tgatgctttt gtcgaactgg gacaacaagg
     1561 acgtgcgcga cgttgcgcgc ggctcgaaca tggccgtctt cgagcacagg gaggaggacg
     1621 gcgcgctgga ggcgcgctac ctgataattg actggggcgc gacgatgggc cggtggggga
     1681 tgccggggac gcgccagaag tgggactgcg aggctttcgc ggcgcagagc gcggagttcg
     1741 tgctcggcgt cgagggcggc gtggtgagct ggggctacac gggccagcgc acggacgacg
     1801 ccgtgcgcgg catcacggtc gaggacgtgc gctggctcta ctcctacgtc gggcgcataa
     1861 cggactctca gctccgcgac ggcctgctgg cgagcggcgc gacggacgag gaggccgact
     1921 gcttcacgcg cgcccttcgc gaccgcatcg aacagctccg gctcgtcgcc gagcagggcg
     1981 acgacttccg gcccgcctct taagagcgtt ctttagtcgg aatttctttg tcggccgggg
     2041 cggtcgcggc gaagtcggcc gggtcgaagt cgcgctcgaa ccactcgcgc agggggcggt
     2101 ggccgcgcgc gtcgtaccag ccgtatcgga gcatctcgcg gaaagcctcc tgcttcgtcc
     2161 agccctggtc ggtcacgcga agcaccgcga tgaggactcc ggtgcggtgc cgcccgccca
     2221 tgcagtgcgt atagacgggg tcttcgggcg tggccgtgcg cacgtgcgcg agccactcgc
     2281 gcacgagcac ggggtcgggc gcctcgcggt cgtggaaggg tatgtgccac cacccgcgca
     2341 tcccggcgcg cagagccttc gcgctctcgt cgtcggcggc gcgatccgtc aggctcagaa
     2401 cccttcgcac gccgagcttg gcgacgagcg ccctgtagcc ctcctcgctc gggaaggcgc
     2461 cgcgatagac ggcccccgtc acccgcgcga agttacgtat cggcatgtcg aactcgttgc
     2521 gccacgtgct cgacttcgcc cactggatta tccacacggc cagaacaccc ccggcgcccg
     2581 ccgctttaca tcttcgagag tcttgccggt ggcgacgcgg ccgggtaggt cgtgcaggtg
     2641 agccgagtag tccagctcgc ctttctcgat agccatcgcg tagcgcatgc cctccgtcct
     2701 actcacttct tcagcctcgc ttgggtcaaa acgctcttca gcgtcttcgg gtgaatatca
     2761 ccgctca
//
LOCUS       DASPKR010000694         4349 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1147670, whole genome shotgun sequence.
ACCESSION   DASPKR010000694 DASPKR010000000
VERSION     DASPKR010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4349)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4349
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1147670"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(279..569)
                     /locus_tag="VD968_18260"
     CDS             complement(279..569)
                     /locus_tag="VD968_18260"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYE16388.1"
                     /translation="MGYARPKPARLAEKLRQIRLVFGLSQTEMLKRLGAEEMIAYHRI
                     SEYELGKREPPLKILLAYARLAGVPVEALIDDEMDLPAKLPARPAQRRGAKI"
     gene            858..4343
                     /locus_tag="VD968_18265"
     CDS             858..4343
                     /locus_tag="VD968_18265"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SBBP repeat-containing protein"
                     /protein_id="HYE16389.1"
                     /translation="MKRLSTPLIAVITLALFTLASAAGAGKLFLNTPAPDAPAGPAGQ
                     APGANMPPAREATEAERAQVVESLGRMPLYFEENRGQAGPGVRYYSRAGNHTLLLSPS
                     EVTLALRGGEGRSATLRMRMAGADRSPEVSGEGEQPGRVNYIRPRPYKSHTGVATFAR
                     VKYAEVYPGVDAVFYGNQRQLEYDFRVAPGADPSQVRLRFEGAERLRVAEDGSLLIQT
                     AVGEVRQHKPFTYQEENGARTEVASAYRVAEGGEVTFELGDFDRSRELVIDPVLSYST
                     YFGSTGNDVITAAAIDADGNAYVTGSAFGSIPTTEGAFDRTLAGQDIFVAKLNPAGAL
                     VYSTYISAASGNNEAKAIAVDASGNAYVTGHAVSAVFTASAGAYDTTHNGSTDAFVAK
                     LNPAGSALVYATYYGTSGQEFANAIAIDPSGDVYIAGHTGVANLPTKNALQSTYAGGS
                     QFGDGDAFMARFSPDGAGAADLVYATYLGGTGDERARGVAADSDGAAYVVGSTNSNGF
                     PTTAGAFDTGFNGGTDGFVTKIDTTATGSSSLAYSTFFGGTGADQVNAVLVDSAATPN
                     VYVAGTTSSAASTFPVTAGSAQPALAGHSDAFFSRIDPSQAGAAALAYSTFVGGGGAE
                     DGNAIARDSSGRIYVAGRTQSTNFPVTPDAFQATNPSGSAEAFAVKLDPAGAGSADRL
                     FATYFGGNNSDAATGVGFDSAQNIYIAGTTTSTNLPTQNAAQSVYQGGNQGGDGFVVK
                     LGSEAGTFSISGRVTNQSSGGAGFANIPVTLSGSATGVRVTDSQGNYTFTGLAAGGNY
                     TLAPSRVNYTFGVPSQTVSNLSADTTGVDFAATINTYVISGRILQNGGPQSGQPLAGA
                     TVTLQVNNGGGAVLQSVTTNSNGDFAFDPQAAERTYFVSASMPAGAPRNYQFSPTGSS
                     TVSNLAANATVNFTARPLYSVSGYVKDGSGNGIQGINVSLQFLRSVTTGANGFYSFTD
                     IPAGDTRKIIPSKAGYNFTPVDRTYTSIAADITDFDFTGATQTYTISGKVTSNTSQPS
                     GQPLSGVIVKLSGSQIAQTTTNASGDYSFTVGANGSYTVTPELADYSFTPGNKSVSNI
                     ASNQTANFTATQKFDMRGTVKDANNQPLSGVTISVNGAAIVTTGADGSFALNDRAGAQ
                     NYTIVPGAPPEGARR"
BASE COUNT          756 a         1651 c         1281 g          661 t
ORIGIN      
        1 ctatcgtgcg gaggttctgc gccgcggcct cgaacgccgc gcggtcgcgg aagacggccc
       61 ccgctgcgcg ctcgtgcgag ccggccgcga ggcagaacag catgagtgag acggcggcga
      121 agacgggcct ggtggttctc aaagccttta gcctccttgc cggggaggca gagagtctaa
      181 cccggccact accccacggc aaggaatttc tcacccaccg cttaagcaaa tgaggacgct
      241 actggcgttc aacttcaaat tcaagtcccg ccggggcttt atatttttgc gccgcgcctt
      301 tgggcgggcc tggcgggcag cttcgccggc aagtccatct cgtcgtcaat cagagcctca
      361 accggcacgc ccgccagccg cgcgtaggcg aggagaatct tgagcggcgg ctcgcgcttc
      421 cccagctcgt actccgaaat cctgtggtac gcgatcatct cttcggcccc gagccgcttc
      481 agcatctccg tctgcgagag gccgaacaca agtctgatct gcctcagctt ttccgccagc
      541 cgcgctggct tcggccgcgc gtagcccata aagtctagcc ctcctgaaag taaagtcacg
      601 gcgtttctct tacgccgtta gtgtgtatcc ccaactgcga acggggcggc cgcgcgaata
      661 tagcacgccc ccggtgccgc gaaaatcaac aaaactaacg ccgctttcct ttccgagccc
      721 tccggaaaat tttcagcccc cccgcgtgat tcctttttcg cgccgcctcc gcgtttctgt
      781 gcggagggcg cacgcgttct taaattccta cgcgcccgcg acgtttttat aaggattcat
      841 tcgagaggct gacccacatg aaaagactgt ccacgccgct gatcgcagtc ataaccctcg
      901 ccctcttcac gctggcctcg gcggccggcg cgggcaagct cttcttaaac actccggcgc
      961 ctgacgcccc ggccggcccc gccgggcagg cgcctggcgc caacatgccg cccgcgcgcg
     1021 aggccaccga ggccgagcgc gcgcaggtcg tcgagagcct cggccgcatg ccgctctact
     1081 tcgaggagaa ccgcgggcag gcgggccccg gcgtgcgcta ctactcgcgc gccggcaacc
     1141 acacgctcct gctctcgccc tccgaggtca cgctcgcact gcgcggcggc gaggggcgct
     1201 ccgccacgct ccgcatgagg atggcgggcg ccgaccgctc cccggaagtc tcgggcgagg
     1261 gcgagcagcc cggccgcgtg aactacatcc ggccgcgccc ctacaagtcg cacacgggcg
     1321 ttgccacctt cgcgcgcgtc aagtacgccg aagtctatcc cggcgttgac gccgtcttct
     1381 acggcaacca gaggcagctg gagtacgact tccgcgtcgc gcccggcgct gacccctcgc
     1441 aggttcgcct gcgcttcgag ggcgccgaac gtctgcgcgt cgccgaggac ggcagcctgc
     1501 taatccagac ggccgtcggc gaagtccgcc agcacaagcc cttcacctac caggaagaga
     1561 acggcgcgcg cacggaggtc gcgagcgcct accgcgtcgc cgagggcggc gaggtcacgt
     1621 tcgagctggg cgacttcgac cgctcgcgcg agctggtcat tgaccccgtc ctctcctact
     1681 cgacctactt cggcagcacc ggcaacgacg tgatcacagc cgccgccata gacgctgacg
     1741 gcaacgcata cgtcaccggc tcggccttcg gctccatacc gacgaccgaa ggcgccttcg
     1801 accgcacgct cgccggccag gacatcttcg tcgccaagct taatcccgcg ggcgccctcg
     1861 tctattccac atacatctcg gccgcctccg gcaacaacga ggcgaaggct atcgccgttg
     1921 acgcctccgg caacgcttac gtcacgggcc acgccgtcag cgcggtcttc acggcgagcg
     1981 cgggcgcata cgacacgacg cacaacggct cgaccgacgc cttcgtcgcc aagctcaacc
     2041 cggcggggag cgcacttgtt tacgcgacct actacggcac ctcgggccag gaattcgcca
     2101 acgcgattgc gattgacccc tcgggcgacg tttacatcgc cggccacacg ggcgtcgcca
     2161 acctgcccac gaagaacgcg ctccagagca cctacgcggg cggctcgcag ttcggcgacg
     2221 gcgacgcctt catggcgcgc ttcagccctg acggcgcggg agccgcagac ctcgtctatg
     2281 ccacctacct cggcggcacc ggcgacgaga gggcgcgcgg cgtcgcggcc gactccgacg
     2341 gcgccgccta cgtcgttggc tcgaccaact cgaacggctt cccgaccacg gccggcgcct
     2401 tcgacacggg cttcaacggc ggcacggacg gcttcgtcac caagatagac accaccgcga
     2461 cgggctcctc gtcgctcgcc tactccactt tcttcggcgg caccggcgcc gaccaggtca
     2521 acgccgtgct ggttgactcg gccgcgacgc ccaacgttta cgtcgcgggc acgaccagct
     2581 ccgccgcctc gacgttcccc gtcacggccg gctcggcgca gcccgcgctc gcggggcatt
     2641 cggacgcctt cttctcgcgc attgacccgt cgcaggcggg cgccgccgcg ctcgcctact
     2701 cgaccttcgt gggcggcggc ggcgccgagg acggcaacgc catagcgcgc gactcctcgg
     2761 gccgcatcta cgtcgccggc cgcacgcagt caaccaactt cccagtcacg cccgacgcct
     2821 tccaggcgac gaacccgagc ggctcggccg aggcgttcgc cgtcaagctc gacccggcgg
     2881 gcgccggctc cgcagaccgc ctgttcgcga cctacttcgg cggcaacaac tccgacgcgg
     2941 ccaccggcgt cggcttcgac tcggcgcaga acatctacat agcgggcacg actacttcga
     3001 ccaacctgcc gacgcagaac gccgcgcagt ccgtctatca gggcgggaac caaggcggcg
     3061 acggcttcgt cgtcaagcta ggctccgagg ccggcacctt ctccatctcc ggccgagtca
     3121 ccaaccagtc gagcggcggc gccggcttcg caaacatccc cgtcacgctc tccggctcgg
     3181 cgacgggcgt gcgcgtaacg gactcgcagg gcaactacac cttcaccggc ctcgcggcgg
     3241 gcggcaacta cacgctcgcg ccctcgcgcg tcaactacac cttcggcgtg ccgtctcaga
     3301 cggtctcgaa cctctccgcc gacaccacgg gcgttgactt cgccgccacc atcaacacct
     3361 acgtcatctc gggccgcata ctccagaacg gcgggccgca gtcggggcag ccgctcgcgg
     3421 gcgcgaccgt cacgctacag gtcaacaacg gcggcggcgc cgtcctacag agcgtgacga
     3481 cgaactcgaa cggcgacttc gccttcgacc cgcaggcggc cgagcgcacc tacttcgtct
     3541 cggcctcgat gccggcgggc gcgccgcgca actaccagtt ctcgcctacg ggcagctcga
     3601 ctgtgagcaa cctcgccgcc aacgcgaccg tcaacttcac cgccaggccg ctctactccg
     3661 tctccggtta tgtaaaggac ggctccggca acggcataca gggcatcaac gtctcgcttc
     3721 agttcctgcg cagcgtcacc acgggcgcga acggcttcta ctcgttcacc gatatcccgg
     3781 cgggcgacac gcgcaagatc atcccgtcga aggccggcta caacttcacg ccggttgacc
     3841 gcacctacac gagtatcgcg gccgacatca ccgacttcga cttcacgggc gcaacgcaga
     3901 cctacaccat ctccggcaag gtcacgagca acacctcgca gccttcgggc cagccgctct
     3961 cgggcgtcat agtcaagctc tccggctcgc agatagctca gaccaccacg aacgccagcg
     4021 gcgactactc gttcaccgtc ggcgccaacg gcagttacac ggtcacgccg gagctcgcgg
     4081 actacagctt cacgcccggc aacaagagcg tgagcaacat cgcctcgaac cagaccgcta
     4141 acttcaccgc cacgcagaag ttcgacatgc gcggcaccgt aaaggacgcg aacaaccagc
     4201 cgctctcggg cgtcaccatc agcgtcaacg gcgcggccat cgtcacgacc ggcgccgacg
     4261 gctcgttcgc cttaaacgac cgcgccggcg cgcagaacta caccatcgtc cccggcgcac
     4321 ctcctgaagg agcacggcgt tgatgtggg
//
LOCUS       DASPKR010000695         4617 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1927474, whole genome shotgun sequence.
ACCESSION   DASPKR010000695 DASPKR010000000
VERSION     DASPKR010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4617)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4617
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1927474"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..268
                     /locus_tag="VD968_18270"
     CDS             <1..268
                     /locus_tag="VD968_18270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16390.1"
                     /translation="GVYGTMQQLSDLKLIDSAIRNATAMVPKSGYSFAITNPTGSGYV
                     SGAAPALGTMGSRQFSSDESGIIYAAPQSGSTPPTTTSGTPIGN"
     gene            322..2397
                     /locus_tag="VD968_18275"
     CDS             322..2397
                     /locus_tag="VD968_18275"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HYE16391.1"
                     /translation="MKTRLRKLLEEPLLLLAALWPFALLAPHLPGLPRPTAGGLPWRQ
                     EFLTSLLLTLTLALLFARPRRRGDSAAAGRVALSLPLPLLLAVPFVAFVWASALWAGQ
                     PWAAAHMAFQWSAYLIFFALMSRAATRPRILRASFVSLGAVVWVLGLACAFESLAGGA
                     LTDGNLRSDLKPLLRGSGGFGEIMAVATFLFAAGALTLRRKTAALACGATAALAWLAT
                     IQAMQRAPFVGGLLGLGLLMTVVLWKRSCRPRGWARPLALSAALALVVAAQALPTSGA
                     DGGEVKFAGEAAPSTIEKLQVGVAGDESARARLLFWGAGVEMFRARPFTGVGANNYEP
                     AFPEARARFAARYPSSPLVRMNEGLLVGYAHNEYVQMLAELGGAGLLLFALFAASLAF
                     AFLRSLKNSRRACLALCAASGALAFAASSGASASSFRNMGGGLVFFFAAALVASSPAR
                     RESVQGAAARPSFSFARVRPAVAACALALMLLMTYDSATRAAAVVLHGAAQSNAGAPR
                     AEELYRASLRWDSSSAAAHFSYGAWLQSSGRAAEAVPHLRRAVAGGFNSSICYARLAF
                     AEEAAGDAAAAERTLSEGLRAYPLSVFLRVSRAVALERLGRREEADVEMVTSLLINSL
                     YARGWRALIEQDVDAASAAARADRGVMSPGKLEPAEAVYLVIEENERRFPERALTGWR
                     ARHRSFKMP"
     gene            2394..3266
                     /locus_tag="VD968_18280"
     CDS             2394..3266
                     /locus_tag="VD968_18280"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16392.1"
                     /translation="MSTELSMPEQSRAAGARAGGETASAATPNPSSLTRVLSIARNTF
                     REAVRDRVLYNLVLFVLILTGAAVFLGELSAAQEAKIIVDVGLSAALMFGVFISIFVG
                     VGLVYKETERRTIYAIFSKPVGRGEFLLGKYLGLCLTLAVNVAVMGAGVSLALLYVRG
                     GWSPAVAGIWPAVALIYVELAIVVAVALLFSSFSSPALSALLTFFVFVIGHFSTDLKA
                     LSASSGSLVSRALFGALYYLLPNFSNYSYITAAAHGRAPTAEAFLAACLYGVAYVAVL
                     LAAATLVFKRRNFK"
     gene            3263..4216
                     /locus_tag="VD968_18285"
     CDS             3263..4216
                     /locus_tag="VD968_18285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16393.1"
                     /translation="MSKGATEKQDGGASTLSRPMAGDALLALVLLGGLACVFALSQRL
                     EDLRPAEDPFATYEEIYVAPDAARRMSLGFNGLVADWYWLRSLQYVGRKMGAHEGRLS
                     LDDLSPLGVRNLGPMLEQATTLDPQFMAAYEFGAIVLPSIDRDAAVRLVEKGIRENPS
                     DWRLRQHLGYIHWQAKRFREAGAAYREGAALPGAPAWMAALAAQVELDGGSRQVAREL
                     YARMHDESDDERIRALAAERLLQLQALDERDALQHMVDAFRSRFSRCPAGWREVAAVL
                     RSAGIQTDASGAPRDPTGAPYALDASACRVKLDERTEIRKR"
     gene            4213..>4617
                     /locus_tag="VD968_18290"
     CDS             4213..>4617
                     /locus_tag="VD968_18290"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE16394.1"
                     /translation="MTTPAVEIENLTKDYEVGFLRKRKVRALDGLTLAVERGEIFGFL
                     GANGAGKTTTLKLLMRLMFPTAGSARILGRDIADTSMRARIGYLPEQPYFYDYLTARE
                     LLEYCAELFGYARGERRRRAEDVLARVRLDEKS"
BASE COUNT          624 a         1657 c         1560 g          776 t
ORIGIN      
        1 tggcgtttac ggcacgatgc agcagctctc agacctgaag ctcattgaca gcgccatcag
       61 gaacgctacc gccatggtcc cgaagagcgg ctacagcttc gccataacga acccaacggg
      121 ctccggctac gtgagcggcg ccgcgcccgc gctaggcacg atgggaagtc ggcagttctc
      181 ttccgacgag agcggcatca tctacgccgc cccccagtcg ggcagcacgc cgcccacaac
      241 gacatcgggg acgcccatcg ggaactgaaa cttccggcga cggccacggc gccgcgcccc
      301 tcgccccccg caacgcgccg catgaagacg cgcctcagaa aacttctcga agagccgctc
      361 ctgctcctcg ccgcgctctg gcccttcgcg ctcctcgcgc cgcacctgcc gggactgccg
      421 cgcccgacgg cgggcggcct gccgtggcgg caggagtttc tcacctccct acttttaacc
      481 ctcacgctcg cgctcctctt cgcgcgcccg cgccgccgcg gcgactccgc ggccgccggg
      541 cgagtcgcgc tttcacttcc cctcccactc ctcttagcag taccgttcgt cgccttcgtg
      601 tgggcctccg cgctgtgggc cgggcagccc tgggcggctg cgcacatggc cttccagtgg
      661 agcgcctacc tcatattctt cgcgctgatg tcgcgcgccg caacgaggcc gagaatccta
      721 cgcgcctcct tcgtctcgct cggcgcggtc gtgtgggtgc tggggctcgc ttgcgcgttc
      781 gagtctttgg cgggcggggc tctgacggac ggcaatctca ggagtgactt gaaaccgctg
      841 ctccggggct ctggcggctt cggcgagata atggcggtcg cgactttcct gttcgccgcg
      901 ggcgcgctga cgctgaggcg caagacggcg gcgctcgcgt gcggggcgac ggccgcgctc
      961 gcgtggctcg ctacgattca ggcgatgcag cgcgcgccgt tcgtgggggg cctgctcggg
     1021 ctggggttgt tgatgacggt cgtgctgtgg aagcgctcgt gccgcccgcg aggctgggcg
     1081 cggccgctcg cgctctcggc cgcgctcgcg ctagtcgtgg cggctcaggc tctccccact
     1141 tcgggcgcgg acggcggcga agtcaagttc gctggcgagg cggcgccgag caccatcgag
     1201 aagctgcaag tgggagtcgc gggcgacgag agcgcgcggg cgcgtctgct cttctggggc
     1261 gccggcgttg agatgttccg cgcgcggccc ttcaccggcg tcggcgcgaa caactacgag
     1321 cctgccttcc ccgaggcgcg cgcgcggttc gctgcgcgct acccgtcgag cccgctggtg
     1381 cgtatgaacg aggggcttct cgtcggctac gcgcacaacg agtacgtgca gatgctcgcg
     1441 gagcttggcg gagcggggct gctactcttc gcgctcttcg ccgcctcgct cgccttcgcg
     1501 ttcctgcggt cgctaaaaaa cagtcggcgc gcgtgcctcg cgctatgcgc cgcgtcgggc
     1561 gcgctcgcct tcgcggcgag ctcaggcgcg agcgcctctt cgttcaggaa catgggcggc
     1621 ggcctcgtct tcttcttcgc cgccgcgtta gtggcctctt cgcccgctcg gcgcgaaagt
     1681 gttcaaggcg ccgccgcgcg gccgtcgttc agcttcgctc gcgtgcgccc tgcggtggcg
     1741 gcatgcgcgc tcgcgctgat gctcttgatg acttacgact cggcgacgcg agccgcggcg
     1801 gtcgtgctgc acggggcggc gcagtcgaac gccggagccc cgcgggcaga agagctctac
     1861 cgcgcgtcgc tccggtggga ctcttcgagc gcggcggccc acttctccta cggcgcatgg
     1921 cttcaatcca gcgggcgcgc ggccgaggcc gtgccgcacc ttcgccgcgc ggtggcgggc
     1981 ggcttcaaca gctcaatctg ctacgcgcgg ctcgccttcg ccgaagaggc ggcgggcgac
     2041 gccgccgcgg ccgagcgcac gctctccgag ggcctgcgcg cctacccgct ctcggtcttc
     2101 ctgcgagtct cgcgcgccgt cgcgctcgag cgcctgggca ggcgcgagga ggccgacgtg
     2161 gaaatggtca cgtcgctctt gataaactca ctctacgcgc gcggctggcg cgcgctcatc
     2221 gagcaggacg tggacgcggc ctcggcggcg gcgcgcgccg accgcggcgt gatgtcgccg
     2281 gggaagcttg agcccgccga ggccgtctat ctcgtcatcg aggagaacga gcggcgcttc
     2341 ccggagcgcg cgctgacggg ctggcgcgcg cgccaccgct ctttcaagat gccatgagca
     2401 cagagctttc gatgcctgag cagagccgag cagcgggggc gagggccggg ggcgagacgg
     2461 cctccgccgc gacgcccaac ccttcatcac tcacgcgcgt cctctccatc gcgcgcaaca
     2521 ccttccgcga ggccgtgcgc gaccgcgtcc tctacaacct cgtactcttc gtgctgatcc
     2581 tgaccggcgc cgccgtcttc ttaggcgagc tctcggccgc gcaggaggcg aagataatcg
     2641 ttgacgtggg cctctcggcc gcgctcatgt tcggcgtctt cataagcatc ttcgtcggcg
     2701 tcggcttggt ctataaggag actgagcggc gcaccatcta cgccatcttc tcgaagccgg
     2761 tcgggcgagg cgagttcctg ctcggcaagt acctcggcct ctgcctgact ctggccgtca
     2821 acgtcgcggt gatgggcgcc ggggtctcgc tcgcgctcct gtacgtgcgc ggaggctgga
     2881 gcccggccgt cgcgggcatc tggccggcgg tcgcgctcat atacgtcgag ctggcgatag
     2941 tcgtcgcggt cgcgctcctc ttctcctcgt tctcgtcgcc cgcgctttcg gcgctactga
     3001 ccttcttcgt cttcgtcata ggccacttca gcacagacct caaggcgctc tcggcgtcga
     3061 gcggctcgtt ggtgtcgcgc gcactcttcg gcgcgctcta ctacctcctg cctaacttct
     3121 cgaactactc ctacatcacg gccgccgcgc acggccgcgc gcccacggcg gaagccttcc
     3181 tcgccgcttg cctctacggc gtggcctacg tcgcggtgct cctggccgcc gcgaccctcg
     3241 tcttcaagag gcgcaacttc aaatgagcaa aggggcgact gaaaagcagg acggcggggc
     3301 ttcgacgctc tcgcgcccga tggcgggtga cgcgctgctc gcgctcgtcc tcctgggggg
     3361 cctggcctgc gtcttcgcgc tctcgcaaag gctcgaagac ctgcgcccgg cggaagaccc
     3421 cttcgcgacc tacgaggaga tttacgtcgc gcccgacgcg gcgcggcgca tgagtttggg
     3481 cttcaacggg ctcgtggccg actggtactg gctgcgctct ctgcaatacg tcgggcgcaa
     3541 gatgggcgcg cacgaaggcc gcctctcgct cgacgacctg agcccgctcg gcgtgcgcaa
     3601 cctcggcccc atgctcgaac aggccaccac actcgacccg cagttcatgg ccgcatacga
     3661 gttcggcgcg attgtgctgc cctcgattga ccgcgacgcg gccgtgcgac tggtagagaa
     3721 gggcatacgc gagaacccct cggactggcg gctgcgccag cacctcggct acatacactg
     3781 gcaggctaaa cgcttccgcg aggcaggcgc ggcttaccgc gagggcgccg cgctgcccgg
     3841 cgcgcccgct tggatggcgg ccctggccgc gcaggtcgaa ctggacggcg gcagccggca
     3901 ggtggcgcgc gagctttacg cgcgcatgca cgacgagtcg gacgacgagc ggatacgcgc
     3961 gctcgccgcc gagcggctcc tacagctcca ggcgctcgac gagcgcgacg cccttcagca
     4021 catggttgac gccttccgct cgcgcttctc ccgatgcccc gccgggtggc gcgaggtggc
     4081 cgccgtgttg cgctcagccg gcattcagac cgacgcatcg ggcgcgccgc gcgacccgac
     4141 gggcgcgcct tacgcgctcg acgcgagcgc ctgccgcgtg aaactcgacg aacgcacgga
     4201 gatacgtaag agatgacgac gcccgccgtt gagattgaga atttgacgaa ggactacgag
     4261 gtcggcttcc tgcgaaagcg gaaggtgcgc gcgctcgacg ggctgacgct cgcggtcgag
     4321 cgcggcgaga tcttcggctt cctcggcgcc aacggcgcgg gcaagacgac gacgctgaag
     4381 ctcctcatgc gcctgatgtt cccgaccgcg ggctcggcgc gcatactcgg ccgcgacatc
     4441 gccgacacct ccatgcgcgc gcgcataggc tacttgcccg agcagcccta cttctacgac
     4501 tacctgacgg cgcgcgagct tctcgaatac tgcgccgagc ttttcggcta cgcgcgcggc
     4561 gagcgaaggc gccgcgcgga ggacgtgctg gcgcgcgttc gactcgacga gaagtct
//
LOCUS       DASPKR010000696         2377 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1927496, whole genome shotgun sequence.
ACCESSION   DASPKR010000696 DASPKR010000000
VERSION     DASPKR010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2377)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2377
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1927496"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..938)
                     /locus_tag="VD968_18295"
     CDS             complement(<1..938)
                     /locus_tag="VD968_18295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16395.1"
                     /translation="MRKFIVALFAVALAAGAALGQSTGAPTLRIVTEDGNKLPAELMY
                     GNTKVKPLRLRPGTNTPITIDDADFFVQQHYVDFLSRFPDQGGFAFWQNEITSCASNV
                     QCIDVKRQNVSAAFFLSIEFQQTGYLVYRMYKAAYGNLPGAPVPVRRESFMPDTRSIA
                     DGVVVGTAGWPERLEANKNAFALAFVQRSDFTAAYPSNMTAEQFVTKMDQNSGDALDA
                     AEHAALVAELGATPNDPQKRANVLRRVAEDQTLHDAEFNKAFVLMQYFGYLKRNPNDL
                     PDTGYGGFNFWLKKLDDNNGNFIQAQMVAAFINSIE"
     gene            complement(1180..>2377)
                     /locus_tag="VD968_18300"
     CDS             complement(1180..>2377)
                     /locus_tag="VD968_18300"
                     /inference="COORDINATES: protein motif:HMM:NF019615.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1698 domain-containing protein"
                     /protein_id="HYE16396.1"
                     /translation="TSAGSSSRAPSRSCSASRWGRQLTTMTREEMLAELERLQPWFHR
                     IDLGGGLFTKTESVMGEPVDHPAGPWQTIQKCLPEDLTGKSVLDVGCNAGFYAIEANR
                     RGAARVLGVDGQRQHVRQAVFVRKALGLDIEYRRMNVYELTRRAVGEFDITLALGLLY
                     HLKHLVLALENLYQVTRELLVIETAIMPPERTPESFTHPLGEAEMRLHALALVENPPE
                     AKEQVFNWFLPGVESLRALLRNTGFSETEVVEVKNERAVLVCRKEVGAAARDVRHHYV
                     AALSLAGGPEASRPGEEVTFAVRVENAGLLPWPVVGEGPGGRGAVHLGSHLLREDEEE
                     VAWDFGRADLLRDLAPGDAATVEIALRAPAEPGRYTVEFDMVAEHVAWFEDFGSGTLR
                     LALTVG"
BASE COUNT          387 a          766 c          801 g          423 t
ORIGIN      
        1 tactcgatgg agttgatgaa ggccgcgacc atctgggcct gtatgaagtt gccgttgttg
       61 tcgtcgagct tcttgagcca gaagttgaag ccgccgtagc cggtgtcggg caggtcgttc
      121 gggttgcgct ttagataccc gaagtactgc atgaggacaa acgccttgtt gaactcggcg
      181 tcatgcaggg tctggtcttc ggcgaccctg cggagcacgt tggcgcgctt ctgcgggtcg
      241 ttaggtgtcg cgccgagctc cgcgacgagc gccgcgtgct ccgccgcgtc gagcgcgtcg
      301 ccggagttct ggtccatctt cgtgacgaac tgctcggccg tcatgttcga aggataagcg
      361 gcggtgaagt ccgagcgctg cacgaaggcg agcgcgaagg cgttcttgtt cgcttccagc
      421 cgctcgggcc aacccgcggt gcctacgacg acgccgtcgg caatgctccg cgtgtcgggc
      481 atgaagctct cgcggcggac ggggacgggc gcgcccggca ggttgccgta ggcggccttg
      541 tacatgcgat agacgaggta gccggtctgc tggaactcta tcgagaggaa gaaggccgca
      601 gagacgttct gccgcttcac gtctatgcac tgcacgttcg aggcgcagga ggtgatctcg
      661 ttctgccaga aggcgaagcc gccctggtcg gggaagcgcg agaggaagtc aacgtaatgc
      721 tgctgcacga agaagtcggc gtcgtcaata gtgatcggcg tgttcgtgcc ggggcgcagg
      781 cgcagcggct tgaccttcgt gttgccgtac atcagctcgg ccggcagttt gttgccgtcc
      841 tccgtgacta tccggagcgt cggcgcgccc gtgctctgcc ccagagccgc gccggccgcg
      901 agcgccactg cgaagagtgc gacgataaac ttacgcatca taaaactccc aaaggttttg
      961 actttcgggg cgggaagtgt tcggttgagc cccaatcctt tagcgggtgt cggttcgctg
     1021 ctgccgggag cggggctgct ccccttgctc gaccaagaac gagtttagac accgcctaaa
     1081 cgtttgtcaa cttaaagaaa ttccggtcaa tccgaccggc ggcgcgcccc ggaaagcccg
     1141 agtttcccgc cgaaacccgg cctacatccc cgcacccatt tagccgaccg taagcgcgag
     1201 gcggagtgtg ccggagccaa agtcctcgaa ccacgcgacg tgctcggcga ccatgtcgaa
     1261 ctcgacggtg tagcggccgg gctcggcggg cgcgcggagg gctatttcga ctgtggccgc
     1321 gtcgccgggc gcgaggtcgc gcaggaggtc tgcgcggccg aaatcccagg cgacctcctc
     1381 ctcgtcctcg cgcaggaggt gcgacccaag gtggactgcg ccgcggccgc ccggcccttc
     1441 gccgacgacg ggccacggca ggagccccgc gttctccacg cggacggcga acgtcacctc
     1501 ctcgccgggc ctgctcgctt cggggccgcc cgcgagtgag agcgccgcga cgtaatggtg
     1561 gcgcacgtcg cgcgcggccg ccccgacctc cttgcggcag acgagcacgg cgcgctcgtt
     1621 ctttacctcg acgacctccg tctcactgaa acccgtgttg cgcaggagcg cccgcagcga
     1681 ctcgacgccg ggcaggaacc agttgaagac ctgctccttc gcctcgggcg ggttctcgac
     1741 gagcgcgagc gcgtgcagcc gcatctcggc ctcgcccagg gggtgcgtga aggattcggg
     1801 cgtgcgctcg ggcggcatga tggccgtctc gatgacgagc agctcgcgcg tgacctggta
     1861 gagattttcg agcgcgagga cgaggtgctt gaggtggtag agcagcccga gcgccagcgt
     1921 tatgtcgaac tcgccgaccg cgcggcgggt cagctcatag acgttcatgc ggcggtactc
     1981 gatgtctagc ccgagcgcct tgcgcacgaa gacggcctgc cggacgtgct gtcgctgccc
     2041 gtcaacgccg agcacgcgcg ccgcgccgcg cctattcgcc tcgatggcgt agaagccggc
     2101 gttgcagcct acgtccagga ccgacttgcc ggttaaatcc tccggtaaac atttctgaat
     2161 cgtttgccag gggccggccg ggtggtcaac cggctcgccc atcacgctct cggtcttggt
     2221 gaagagaccg ccgcctaggt ctatgcggtg gaaccagggc tggagccgct ccaactccgc
     2281 gagcatctct tcgcgcgtca tcgtcgtcaa ctgcctaccc cacctcgaag ccgagcacga
     2341 gcggctcgga gccctgctgc tcgaaccagc agacgtg
//
LOCUS       DASPKR010000697         2878 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_369698, whole genome shotgun sequence.
ACCESSION   DASPKR010000697 DASPKR010000000
VERSION     DASPKR010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2878)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2878
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369698"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..627)
                     /locus_tag="VD968_18305"
     CDS             complement(<1..627)
                     /locus_tag="VD968_18305"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYE16397.1"
                     /translation="MEVWKEAIVAAAAFAAGVINSIAGGGTLVSFPALVWTGRDPVLA
                     NATSTVALWPASLAGVYGFRRELGGGRRWLLLFGAPSLAGGVLGAVLLLRTPTATFAR
                     LVPYLILFATLLLALQEPISRRLRGGDDADERKPSRAWAAGAVAFQFLVGVYGGYFGA
                     GIGILMLAALGLLGFSDIHRMNALKNLLAICINGVAAAYFIFSGAVIWA"
     gene            complement(639..2318)
                     /locus_tag="VD968_18310"
     CDS             complement(639..2318)
                     /locus_tag="VD968_18310"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HYE16398.1"
                     /translation="MRKTLALIVCIAALAFDRPAPAQRELGARPTDSGGPLIFEQAAY
                     DVTHYDLAVKVEPAQQSISGTLTARARIVHPVDWFVLDLDTPLAVGAASLVEGPREAA
                     RPLRFERRGGKIWVALPRTMQPGEAVAVRVTYAGKPRVAPRPPWVGGFVWAKTPSGEH
                     WVATACQMDGADVWWPCKDHPSDEPDSMSLHITVPSNLVAASNGRLTGVVKNGDGTST
                     YNWHVSTPINNYGVALNIAPYRTINGTYRSVTGETVPTTFWVLPENYEKGQKLFAELP
                     DMLRFFEKHLGPYPFRADKIGIAETPHLGMEHQTVIAYGNEFKPAENGFDWLLFHELG
                     HEWWANLVTASDWRDFWIHEGFQSYMDALYNGEKGGEAAYRRHIARLRASIRNKQAVA
                     PREPRSAVQVFLAAPDYVRSDGDIYNKGALALHTLRYLIGDKAFFTALRRMAYPSPSA
                     ERLKDGRQCRFVTTDDFLRIAEDASGMKLDWFFEVYLRQPDAPRLVSSIEGDALTLRW
                     ETPGGLPFPMPVEVQLGDAVRRVNVSTSPVTVPLNGQKPVVDPSGWVLRAD"
     gene            complement(2328..>2878)
                     /locus_tag="VD968_18315"
     CDS             complement(2328..>2878)
                     /locus_tag="VD968_18315"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF006416.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HYE16399.1"
                     /translation="EAVIATTMQAISGAGYPGVPSLDITDNVLPFISGEEEKVETEPQ
                     KILGRLVGERVEPARFEVSAQCNRVNVTDGHTVAARVKLAKAAEPEEVREAFASYTSL
                     PQELRLRTAPERPVIVRDEPDRPQPRLDREAGGGMSVTVGRIGRDRVLDYRFVALGHN
                     TIRGAAGAALLNAELLIATGRL"
BASE COUNT          457 a          953 c         1016 g          452 t
ORIGIN      
        1 ggcccagatg accgcgccgg agaagatgaa gtaggcggcg gctacgccgt tgatgcagat
       61 tgccaggagg ttcttgagcg cgttcatgcg gtgaatgtcg ctgaagccca aaagcccgag
      121 cgccgccagc atcagtatcc ctatccccgc cccgaagtag ccgccgtaaa cccccaccaa
      181 gaactgaaag gccaccgccc cggcggccca cgccctcgaa ggcttccgct cgtcggcgtc
      241 atcgccgccg cgaagcctgc gcgagatcgg ctcctgtagc gccagcagca gcgtggcgaa
      301 gagtatgagg taagggacga ggcgcgcgaa cgtcgccgtg ggcgtccgca gcagcagaac
      361 cgcgcctaag acgccgcccg cgagcgaagg ggcgccgaag agcaggagcc accgcctgcc
      421 cccgcccaac tcgcgccgga agccgtaaac ccctgcgagc gacgcgggcc agagcgccac
      481 ggtgctagtc gcgttcgcga gcacggggtc tcggcccgtc cagacgagcg cggggaagga
      541 gacgagcgtg ccgccgcccg cgatggagtt tatgaccccg gccgcgaacg ccgccgcggc
      601 gactattgcc tccttccaga cttccatccg tcgagccttc agtccgccct gagaacccag
      661 cccgaagggt caacgacggg cttctgcccg ttgagcggga cggtgacggg cgaggtggag
      721 acgttgacgc ggcgcaccgc gtcgcccaac tgcacctcca ccggcatggg gaagggaagg
      781 ccgcccggcg tctcccaccg cagcgtgagc gcgtcgccct ctattgagga gacgaggcgc
      841 ggcgcgtcgg gctgtcgcaa gtaaacctcg aagaaccagt cgagcttcat ccccgacgca
      901 tcctcggcaa tgcgcaggaa gtcgtccgtc gtgacgaagc ggcactgcct gccgtccttc
      961 agacgctcgg ccgaggggct ggggtaggcc atgcgacgca gcgccgtgaa gaaagccttg
     1021 tcgcctatca ggtatcgcag cgtgtggagg gccagggcgc ccttgttgta gatgtcgccg
     1081 tcgcttcgca cgtagtcggg cgcggcgagg aacacctgca cggccgagcg cggctcgcgc
     1141 ggggccacgg cctgcttgtt gcggatgctt gcgcgaaggc gcgcgatgtg gcgtcggtag
     1201 gcggcttcgc cgcccttctc gccgttgtag agcgcgtcca tgtaggactg gaagccctcg
     1261 tgaatccaga agtcgcgcca gtccgatgcc gtcactaggt tggcccacca ctcgtggccc
     1321 aactcgtgga agaggagcca gtcgaagccg ttctcggccg gcttgaactc gttgccgtag
     1381 gcgatgacgg tctggtgctc cattccgagg tgcggcgtct cggcgatgcc gatcttgtcg
     1441 gcgcggaacg ggtaagggcc gaggtgcttc tcgaagaagc gaagcatgtc gggaagctcc
     1501 gcaaaaagct tctgcccctt ctcatagttc tcgggcagaa cccagaaggt ggtcggcacc
     1561 gtctcgccgg tgacgcttcg gtatgtgccg ttgatagtcc ggtagggcgc gatgttgaga
     1621 gccacgccgt agttgttaat cggggtggag acgtgccagt tatacgtgct cgtaccgtcg
     1681 ccgtttttga ctacgcccgt gaggcgcccg ttcgaggcgg cgacgaggtt ggacggcacc
     1741 gttatgtgca gcgacatcga gtcgggctcg tctgaggggt gatccttgca gggccaccag
     1801 acgtcggcgc cgtccatctg gcaggccgtc gccacccagt gctcgcccga gggcgtcttg
     1861 gcccagacga agccgccgac ccacggcggg cgcggggcga cgcgcggctt gccggcgtaa
     1921 gtcacgcgaa ccgcgaccgc ctcgcccggc tgcatcgtcc gcgggagcgc gacccagatt
     1981 ttgccgccgc gtcgctcgaa ccgcagcggg cgcgcagcct cgcgcggccc ttcgaccagc
     2041 gaggcggcgc cgacggcgag cggcgtgtcg aggtcgagca cgaaccaatc aacggggtgg
     2101 actattcgcg cgcgcgccgt cagcgtcccg gagatggact gctgcgcggg ctcgaccttc
     2161 acggcgaggt cgtagtgcgt cacgtcgtat gcggcctgct cgaagatgag ggggccgccg
     2221 gagtccgttg ggcgcgcgcc cagctccctc tgcgcgggcg ccgggcggtc gaaggcgagc
     2281 gcggcgatgc agactatcag cgcgagtgtc tttctcatgg tctgttttca gagtctcccg
     2341 gtcgctatca gaagttcggc gttgagcagg gcggcgccgg ccgcgccgcg tatggtgttg
     2401 tggccgagcg cgacgaagcg gtagtcgagc acgcggtcgc gcccgatgcg gccgaccgtg
     2461 acgctcatgc cgcccccggc ctcgcggtcg aggcgcggct gcggccggtc gggctcgtcg
     2521 cggacgatga cgggccgctc gggcgcggtt cttagtcgca gctcctgcgg cagagaagtg
     2581 taggaggcga aagcctcgcg aacctcctcg ggctcggccg ccttcgcgag cttcacgcgc
     2641 gccgcgacgg tgtggccgtc cgtgacgttg acgcggttgc actgcgcgct cacctcgaag
     2701 cgcgcgggct cgacgcgctc accgacgagg cggcccaaaa tcttctgcgg ctccgtctcg
     2761 accttctcct cctcgcccga gatgaagggc agcacgttgt ccgtgatgtc gagcgaaggg
     2821 acgccggggt agcccgcgcc cgagatggcc tgcatcgtcg tcgcgatgac ggcctcga
//
LOCUS       DASPKR010000698         9119 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1012933, whole genome shotgun sequence.
ACCESSION   DASPKR010000698 DASPKR010000000
VERSION     DASPKR010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9119)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9119
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1012933"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..1540
                     /locus_tag="VD968_18320"
     CDS             104..1540
                     /locus_tag="VD968_18320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016291004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HYE16400.1"
                     /translation="MTQNTPSASFAFTLRVKLSSRPGTLGELTTALGRVGADIGAIDI
                     VSVGRDAIVRDVTVNAASTEHAEQIVGAARDVDGVEVVNVSDRVFLMHLGGKIEVTSK
                     VPLKTRADLSMAYTPGVARVCEAIRRDPEKAFTLTIKRNTVAVVSDGTAVLGLGDIGP
                     AAAMPVMEGKAMLFKEFAGVDAFPICLSTKDPNEIVETVKRISVAFGGINLEDISAPR
                     CFEIEERLKEELDIPVFHDDQHGTAVVVLAALLNAVKIVGKRLEDLKVVVNGVGAAGV
                     ACTKIILNAGVRNVVGCDQTGALHRGRTENMNWVKDHYARITNPDNEQGSVHDVIRGA
                     DVFFGLSAPGVIGVEDLKVMARDPIIFAMANPTPEIMPEEAAGHVAVMATGRSDYPNQ
                     INNVLCFPGIFRGALQCRASRINEEMKLAAAQAIASIITEEELHPEYIVPSVFDKRVA
                     EAVSREVEEAAYRTGVARRERAHADPLI"
     gene            1712..3088
                     /locus_tag="VD968_18325"
     CDS             1712..3088
                     /locus_tag="VD968_18325"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HYE16401.1"
                     /translation="MATASAGAHAAPADLTKHPKGLYVLFATEMWERFSFYSMLAMFA
                     LYMRDTTGQGFAWSVDDTQALVSNYLMFVYASPLVGGWIADKKIGYRKAVMIGGLFFM
                     AGHLLLSFRSIGIVYLALTCLVIGNGFFKPNVSAMVGNLYPEGSHLKDRAYSIFYMGI
                     NVGAFLAPVVMEIVQSRFGYHPAFAVAAGGMVISVFLLWKFKRHVEAADRPMSRGAKN
                     IANVAAVTEDAPPASVSQQNAIDAVPDWKRVSALIVIFLIVIVFWMVFHQNSTTITYW
                     GDENTDWKVSGIISNAINPAWVILLTFPLVWFWGWLDKKGLEPSTPMKMVVGMVMTAL
                     AFFIFFIAAKLGEASLAPGAGPYDYKMSPLWLLGAYGVLTLGELMLSPMGLSLVSKVA
                     PIRMRGLMMGGWFVATAIGNKLTQIGQLWDDWLHSTFWIFLSACALVMAFVLLILLRP
                     LKKAMPGV"
     gene            3227..5317
                     /locus_tag="VD968_18330"
     CDS             3227..5317
                     /locus_tag="VD968_18330"
                     /inference="COORDINATES: protein motif:HMM:NF021942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S46 family peptidase"
                     /protein_id="HYE16402.1"
                     /translation="MRRTLALALAVIFLLPSLSLADEGMWTFDNPPLKDWKERYNFEP
                     SPAWLEHVRLASARLAEVGTTTGGGSGAFVSADGLIATNQHVGASQLAKLSTKERDIV
                     KNGFYAATRAEELKCPDYEVSVLVSYEDVTRRVEGTVRAGASPAEANEQRRRETAAIE
                     KESDQRTGLRSQVVTLYSGGEYWLYRFKKYTDVRLVFAPEEQAAFFGGDYDNFTYPRY
                     NFDVSFFRAYEEGRPARTEHFFKWSKAGPAEGEFVLAVGSPGSTNRLLTVAQLRFQRD
                     VGNPLQMQVWSSRRDALARFAERGTEQARRASSARRSLENSIKRLTGQQEGLMSPRMF
                     AKKEAEERALRDAVAKRPELQRDFGGAWGEVEAAYRDLPRMAKRIAFTTLSPSRLGSI
                     ATTIVRHAEEARKPNERRAEEFRENRLAATLLSLYSPAPIYADLEEAVLAAWLEEAQK
                     TLGADDPFVRAALEGSAPAEAAKKLITGTKLADVAARRALVEGGAEAVAKSDDPLIAL
                     ARKVEPIARELRAWEETNIKSVEAGAGARIARARFAVYGKSAYPDATSSPRISYGTVR
                     GYEEDTTLVPFKTTFYGLYDRAEGFGEKPPYDLPGRFKERRAALDLATPFNFVYTADT
                     IGGNSGSPVVNRAGELVGLNFDSNIQKLPNRYWYVDESEGGRAVAVHSAAVIEGLRKV
                     YDAAGLVEELTGSK"
     gene            5345..7573
                     /locus_tag="VD968_18335"
     CDS             5345..7573
                     /locus_tag="VD968_18335"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HYE16403.1"
                     /translation="MTTSRVTRLARAVLPCALLLVACHFVARAQDKQLTVEDIYDPAR
                     KASFGNEPVSDLKWLNDGEHYLWAKKDGGAKATTLLRVNARTGRSEPFFDAARMEAAL
                     ARLPGVTREDAAKLARKGSYTMSPSQTGLLLNHANDLFYYDTASGSAVRLTSGPGEES
                     EEDFSPDGRMVSFVRANNLHVVELATQRERALTSDGSATVLNGVLDWVYEEELYGRGN
                     KRGYWWSPDSARIAYLRLDEARVKTFPVVDHIPREQVLEDTPYPLAGEPNPLVTLGVV
                     GAAGGETTWVDLSGYEPTDLLVVRVAWSPDSRRVVYQAQNREQTYLDLNAADAGTGKT
                     TRLFQEKTPAWVEVVDNPLWLRDGSFLWRSERTGWAHIYHYSGDGKLIRQVTDGKWEA
                     RSLEGVDEKAGWAYFRGTEHSHIADHIYRVRLDGTGLTRLSKAEGNHSATFNPQFTLF
                     IDKWSDINTPAQTRVHAADGSAVRVVDENRADALRQYRLGAAEFLQVRSRDGFPMEAM
                     MIKPPGFDPSKKYPVMSFTYGGPHAPQVKNNWGGQSYLWHQMLAQKGYIIWVLDNRTA
                     SGEGAESAWMGYKKMGVLELQDLEDGVSYLKGLPYVDGSRIGLWGWSYGGFMTSYALT
                     HSKSFRLGIAGGSVTDWANYDSIYTERIMRTPQNNPEGYAETSVLRAAKNLSGKLLLI
                     HGAIDDNVHMSNTIQLAYELQKAGKPFRLMLYPKSRHGVSDPLLLKHMRQMMADFILE
                     NL"
     gene            7613..8857
                     /locus_tag="VD968_18340"
     CDS             7613..8857
                     /locus_tag="VD968_18340"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HYE16404.1"
                     /translation="MAETNNPEVNARRVRDIQAALREQNLDGWLFYDFRRSDPLSYRI
                     LLLDQTKFASRRWFYFIPAEGEPAKVVHRIEPEKLDALPGRRLIYLRWQQLHAHLRDA
                     LGASGGNGGGRKRKVAMQYSPMGDIPYVSRVDAGTVELVRSMGVEPVTSADLVQLFEA
                     VWTPEQKASHDRAADNIHNIILEAFGEIGRRVRAGEPTTEYDIQQFIMRRFDEEGMTS
                     DGAPPIVAVNANSASPHYGPTKEVNSPIKRGDFVLLDVWAKMKRPGAVYADQTWTGFV
                     GETVPEEHTRVFEVVSGARDAAVEFLREQIRAGNFVRGAEVDDVSRGVIERAGFGEHF
                     VTRTGHSIGEEVHGNGANIDNLETPDGRSITRRTCFSIEPGVYQEGRFGLRSEIDVYV
                     GDDDIEVTGQPIQTEVVAILRD"
BASE COUNT         1675 a         3095 c         2957 g         1392 t
ORIGIN      
        1 caagacatta tcccgacaac acgcttgcgc ggtgcggtct ttggcgttag catcacggca
       61 tcattcccgt acaaaccccg gcgaaaggac tttcgctaga gccgtgacgc agaacacacc
      121 gagcgcgagt ttcgccttca cgctgcgcgt caagctgtcg agccgcccgg gcacgctcgg
      181 cgagctgacg acggcgctgg gccgggtcgg ggccgacatc ggcgccatcg acatcgtcag
      241 cgtcggccgc gacgccatcg tccgcgacgt gacggtgaac gccgcatcca ccgagcacgc
      301 cgagcagatc gtcggggcgg cgcgcgacgt ggacggcgtc gaggtggtca acgtcagtga
      361 ccgcgtcttc ctcatgcacc tcggcgggaa gattgaggtc acctcgaaag tccctctgaa
      421 gacgcgcgcc gacctctcga tggcctacac gccgggcgtc gcgcgcgtct gcgaggccat
      481 ccgccgcgac ccggagaagg ccttcaccct caccatcaag cgcaacaccg tggccgtcgt
      541 ctccgacggc acggccgtgc tgggcttagg cgacataggc ccggccgcgg cgatgcccgt
      601 gatggaaggc aaggcgatgc tcttcaaaga gttcgcgggc gttgacgcct tccccatctg
      661 cctctccacg aaagacccga acgagattgt agagaccgtc aagcgcatct ccgtcgcctt
      721 cggcggcata aacctcgaag acatctccgc cccgcgctgc ttcgagatag aggagcgact
      781 gaaggaggag ttagacatcc ccgtcttcca cgacgaccag cacggcacgg ccgtcgtcgt
      841 cctggccgcc ctcttaaacg cggtgaagat agtcggcaag cggctggaag atttgaaggt
      901 ggtcgtcaac ggcgtcggcg ccgcgggcgt ggcctgcacg aagatcatcc tcaacgcggg
      961 cgtgcgaaac gtcgtcgggt gcgaccagac gggcgcgctc caccgcgggc gcaccgagaa
     1021 catgaactgg gtcaaggatc actacgcgcg catcacgaac ccggacaacg agcaggggag
     1081 cgtccacgac gtgatacgcg gcgccgacgt gttcttcggc ctgtcggcgc cgggcgtcat
     1141 aggcgtcgag gatttgaagg tgatggcgcg cgatcccatc atcttcgcga tggcgaaccc
     1201 gacgccggag ataatgccgg aggaggccgc cggccacgtc gccgtgatgg cgacggggcg
     1261 cagcgactac ccgaaccaga taaacaacgt gctctgcttc cccggcatat tccgcggcgc
     1321 cttacagtgc cgcgcctcgc gcataaacga ggagatgaag ctcgccgccg cgcaggccat
     1381 cgcctccatc atcaccgagg aggagctgca ccccgagtac atcgtccctt cggtcttcga
     1441 caagcgcgtg gccgaggccg tctcgcgcga ggtcgaggag gccgcgtacc gcacgggcgt
     1501 cgcccgccgc gagcgcgccc acgccgaccc ccttatctga gggcggccgc cgtacagggg
     1561 cccgcgcccg ctcggctgat gacacccgcg ccgtttacgg gtattatggc ggccaaaccc
     1621 ctgaaaagga ccggtctccc cgtcgctcgc gtgggcaggt tttcgaccgg gctgctgtca
     1681 aacagtcaag acccataagg aggaagaagc gatggcaacg gccagcgcgg gcgcccacgc
     1741 ggcgccggca gaccttacca aacacccgaa ggggctctac gtcctcttcg cgaccgagat
     1801 gtgggagcgc ttcagcttct actcgatgct cgcaatgttc gcgctctaca tgcgcgacac
     1861 gacggggcag ggtttcgctt ggtcggtgga cgacacgcag gcgctcgtct ccaactacct
     1921 gatgttcgtc tatgcctcgc cgctcgtggg cggctggata gccgacaaga agatcggcta
     1981 ccgcaaggcg gtgatgatag gcggcctctt cttcatggcc ggccacctgc tgctctcctt
     2041 ccggtcaatc ggcatcgtct atctcgcgct gacctgcctc gtcataggca acggcttctt
     2101 caagccgaac gtctcggcga tggtcggcaa cctctacccg gagggcagcc acctcaagga
     2161 tcgcgcctac agcatcttct acatgggcat caacgtcggc gccttcctcg cgcccgtcgt
     2221 gatggagata gtgcagtcgc gcttcggcta ccacccggcc ttcgccgtcg ccgccggcgg
     2281 gatggtcatc tcggtcttcc tgctctggaa gttcaagcgg cacgtcgagg cggccgaccg
     2341 gcccatgagc cgcggcgcca agaacatcgc caacgtcgcg gccgtcacgg aggacgcgcc
     2401 gccggcgagc gtaagccagc agaacgccat agacgccgtg ccggactgga agagggtcag
     2461 cgcgctcatc gtaatctttc tcatcgtcat cgtcttctgg atggtcttcc accagaactc
     2521 gacgaccata acctactggg gcgacgagaa caccgactgg aaggtctcgg ggataatctc
     2581 gaacgcgata aacccggcct gggtcatact gctcaccttc ccgctcgtct ggttctgggg
     2641 ctggctcgac aagaaggggc tggagccctc gacgccgatg aagatggtcg tgggcatggt
     2701 gatgacggcg ctggccttct tcatcttctt catcgcggcg aagctaggcg aggcgtcgct
     2761 cgcgccgggc gcgggcccct acgactacaa gatgtcgccg ctgtggctcc tcggcgccta
     2821 cggcgtgctc actctgggcg agctgatgct ctcgccgatg ggcctgtcac tcgtctcgaa
     2881 ggtggcgccc atacgcatgc gcggcctgat gatgggcggc tggttcgtag ccacggccat
     2941 cggcaacaag ctgacgcaga taggccaact ctgggacgac tggctccact cgaccttctg
     3001 gattttcctg agcgcctgcg cgctcgtcat ggccttcgtg ctgctcatac tgctgcggcc
     3061 gctcaagaag gctatgcccg gcgtctgaca gaacagggcg gtcggtagcc ggtagtcagt
     3121 agccagtggc gctccgcgct gccggcgctg acgcttccgt ccgggcggtt caccggggag
     3181 gcttttctac cggctaccgg ctaccggcta cttcctgatt tccatcatga gacgaaccct
     3241 tgccctcgcg ctggcagtaa tcttcctgct cccgtccctc tccctcgcgg acgaggggat
     3301 gtggactttc gacaacccgc cgctgaagga ctggaaggag cgctacaact tcgagccgag
     3361 ccccgcgtgg ctcgagcacg tccgcctcgc atccgcaagg ctcgctgagg taggcacgac
     3421 gacgggcggc gggagcggcg ctttcgtctc cgcggacggc ctgatagcca ccaaccagca
     3481 cgtcggcgcc tcgcagctcg ccaagctctc gacgaaagag cgcgacatag ttaagaacgg
     3541 cttctacgcc gcgacgcgcg ccgaggagct taaatgcccc gactacgagg tgagcgtgct
     3601 cgtctcctac gaggacgtga cgcgccgcgt cgagggcacc gtgcgcgcgg gcgcctcgcc
     3661 cgccgaggcc aacgagcagc gcaggcgcga gacggcggcg atagagaaag agtcagacca
     3721 gcggacgggc ctgcgcagcc aggtcgtcac gctctacagc ggcggcgaat actggctcta
     3781 ccgcttcaag aagtacacgg acgtgcggct cgtcttcgcg cccgaggagc aggcggcctt
     3841 cttcggcggc gactacgaca acttcactta ccctcgctac aacttcgacg tttccttctt
     3901 ccgcgcgtac gaggagggcc gccccgcccg caccgagcac ttcttcaagt ggtcgaaggc
     3961 cggcccggcg gagggcgagt tcgtcctggc ggtcgggagc cccggctcga cgaaccggct
     4021 gctgacggtc gcgcagctac gcttccagcg cgacgtgggc aacccgctac agatgcaggt
     4081 ctggtcgtcg cgccgcgacg cgctcgcgcg cttcgccgag cgcggcaccg agcaggcccg
     4141 acgcgcttcg agcgcgcgcc gctcgctcga gaactccatc aagcgactga cgggacagca
     4201 ggagggcctg atgagcccgc gcatgttcgc gaagaaggag gccgaggagc gcgccctccg
     4261 cgacgccgtg gcgaagcgcc ctgagcttca gcgcgacttc ggcggcgcgt ggggcgaggt
     4321 cgaggccgcc taccgcgacc tgccgcgcat ggcgaagcgc attgccttca cgacgctctc
     4381 gccctcgcgg ctcggctcga tagccacgac gatagtccgc cacgccgagg aggctcggaa
     4441 gcccaacgag cgccgcgccg aagagttccg cgagaaccgg ctggcggcga cgctgctgag
     4501 cctctactcg cccgcgccca tctacgcaga cctcgaagag gccgtgctcg ccgcgtggct
     4561 cgaagaggcg cagaagacgc tcggcgccga cgacccgttc gtgcgcgcgg cgctcgaagg
     4621 ctccgccccg gccgaggccg cgaagaaact catcacaggg actaagctcg ccgacgtcgc
     4681 ggcccgccgc gccctcgtag agggcggggc ggaggcggtc gccaagtccg acgatccctt
     4741 aatcgcgctc gcgcgcaagg tcgagcccat cgcgcgcgag ctccgcgcgt gggaggagac
     4801 gaatataaag agcgtcgagg ccggcgccgg cgcccggatt gcgcgcgccc gcttcgccgt
     4861 ctatggcaag tcggcatacc cggacgcgac gtcgagcccg cgcataagct acggcaccgt
     4921 gcgcggctac gaggaagaca cgacgctcgt ccccttcaag acgaccttct acgggctcta
     4981 cgaccgcgcc gaggggttcg gcgaaaagcc gccttacgac ctgccggggc gtttcaagga
     5041 gaggcgcgca gcgctcgacc tcgccacccc cttcaacttc gtctatacgg ccgacaccat
     5101 cgggggcaac tccggcagcc ccgtcgtcaa ccgcgcgggc gagctggtcg gcctcaactt
     5161 cgacagcaac atacagaagc tgccgaaccg ctactggtac gttgacgagt cggagggcgg
     5221 ccgcgcagtc gccgtccaca gcgccgccgt catagagggg ctgcgcaagg tttacgacgc
     5281 cgccggcctc gtcgaagagc ttacgggcag taaatagaca attgaagaca gaggagccac
     5341 ccctttgaca acctcccgcg taacacgcct cgcccgagcg gtgctgccgt gcgccctgct
     5401 gctcgtcgcc tgccatttcg tcgcgcgcgc gcaggacaag cagctcaccg tcgaagacat
     5461 ctacgacccc gccaggaagg cgagcttcgg taacgagccg gtctcggact tgaagtggct
     5521 caatgacggc gagcactacc tctgggccaa aaaggacggg ggggcgaagg cgacgacgct
     5581 gctgcgcgtc aacgcccgca cgggccgctc cgagcccttc ttcgacgccg cgcgcatgga
     5641 agcggcgctc gcgcgcctgc ccggcgtaac gcgcgaagac gccgccaagc tcgcccgcaa
     5701 gggctcttac acgatgagcc cctcgcagac ggggctgctc ctcaaccacg caaacgacct
     5761 cttctactac gacacggcgt cgggctcggc cgtgcggctc acctccgggc cgggcgagga
     5821 gtcggaggag gacttcagcc ccgacggccg gatggtcagc ttcgtgcgcg cgaacaacct
     5881 ccacgtcgtc gagctggcga cgcagcgcga gcgcgctctc acctccgacg gctcggccac
     5941 cgtcctgaac ggcgtcctcg actgggtcta tgaggaggag ctttacgggc gcggcaacaa
     6001 gcgcggctac tggtggtcgc ccgactctgc gcgcatagcc tacctgcgac tcgacgaggc
     6061 gcgcgtcaaa accttccccg tcgttgacca catcccgcgc gagcaggtct tggaagacac
     6121 gccctacccg ctcgcgggcg agccgaaccc gctagtcacg ctcggcgtcg tgggcgcagc
     6181 gggcggcgag acgacgtggg ttgacctctc ggggtacgag cccacagacc tgctcgtcgt
     6241 ccgcgtcgcc tggtcgccag actcgcgccg cgtcgtctat caggcgcaga accgagagca
     6301 gacctacctc gacctgaacg ccgccgacgc cgggacgggc aagaccacgc gcctcttcca
     6361 ggagaagacg cccgcgtggg tggaggtcgt ggacaatccc ctctggctca gggacggctc
     6421 gttcctttgg cgctctgagc gcaccggctg ggctcacatc taccactact cgggcgacgg
     6481 caaactgata aggcaggtga cggacggcaa gtgggaggcg cgctcgctcg aaggcgtgga
     6541 cgaaaaagcg ggctgggcct atttccgcgg caccgagcac agccacatcg ccgaccacat
     6601 ctaccgcgtg cgcctcgacg gcaccgggct gacgcgcctg tcgaaggcgg agggcaacca
     6661 cagcgccacc ttcaacccgc agttcacgct gttcatagac aagtggagtg acatcaacac
     6721 gccggcccag acgcgcgtcc acgcagccga cggctcggcc gtgcgcgtcg ttgacgagaa
     6781 cagggccgac gctctcaggc agtacaggct aggcgcggcc gagttcctac aggtcaggtc
     6841 gcgcgacggc ttcccgatgg aggccatgat gattaagccc cccggcttcg acccgtcgaa
     6901 gaagtacccc gtgatgagct tcacctacgg ggggccgcac gcgccgcagg tcaagaacaa
     6961 ctggggcggg cagtcgtacc tgtggcacca gatgctcgcg cagaagggct acatcatctg
     7021 ggtgctcgac aaccgcacgg cgagcggcga gggcgcagag tcggcctgga tgggctacaa
     7081 gaagatgggc gtcctcgagc tccaagacct agaagacggc gttagctacc tgaagggcct
     7141 gccctacgtt gacggctcgc gcatagggct ctggggctgg agctacggcg ggtttatgac
     7201 gagctacgcg ctgacgcaca gcaagagctt ccgcttaggc atcgcgggcg ggagcgtgac
     7261 cgactgggca aactacgact ccatctacac cgagcgcatc atgcgcacgc cgcagaacaa
     7321 cccagagggc tacgccgaga cttcagtcct gcgcgcggcg aagaacctct cgggcaagct
     7381 cctcctgata cacggcgcga ttgacgacaa cgtccacatg tcgaacacaa tccagctcgc
     7441 ctacgagttg cagaaggccg gcaagccctt ccggctcatg ctctacccga agtcgcgcca
     7501 cggcgtcagc gacccgctgc tcctgaagca catgcggcag atgatggccg acttcatcct
     7561 cgaaaacctc tgaggcttaa tccgaaagac ttactgaagg gaaggttgag atatggctga
     7621 gacgaacaac ccggaagtga acgcgcggcg cgttcgggac atacaggcgg cgctcaggga
     7681 gcagaacctc gacggctggc tcttctacga cttccgccgc agcgacccgc tctcgtaccg
     7741 gatactcctg ctcgaccaga cgaagttcgc ctcgcgccgc tggttctact tcatcccggc
     7801 cgagggcgag cccgcgaagg tcgtccaccg catcgagccc gagaagctcg acgcgctgcc
     7861 cggccgccgc ctcatatacc tgcgctggca gcaactgcac gcgcacctgc gcgacgcgct
     7921 cggcgcctcg ggcggcaacg gcggcggccg gaagcgcaag gtcgccatgc agtactcgcc
     7981 gatgggcgac ataccctacg tctcgcgcgt ggacgcggga acggtcgagc tggtgcgctc
     8041 gatgggcgtc gagcccgtca cgagcgcaga cctcgtgcag ctcttcgagg ccgtctggac
     8101 gcccgagcag aaggcgtcgc acgaccgcgc ggccgacaat atccacaaca tcatcctcga
     8161 agccttcggc gagataggcc gccgcgtgcg cgcgggcgag ccgaccacgg agtacgacat
     8221 acagcagttc atcatgcgcc gcttcgacga ggaggggatg acgagcgacg gcgcgccccc
     8281 catcgtcgcc gtcaacgcca acagcgcgag cccgcactac gggccgacga aggaggtcaa
     8341 ctctccgatc aagcgcggcg acttcgtgct cctggacgtg tgggcgaaga tgaagcggcc
     8401 cggggcggtc tatgcggatc agacgtggac gggcttcgtc ggcgagacgg tgccggagga
     8461 gcacacgcgc gtcttcgagg tcgtgagcgg cgcgcgcgac gcggccgtag aattcctgcg
     8521 cgagcagata cgcgcgggca acttcgtgcg cggggcggag gtggacgacg tttcgcgcgg
     8581 ggtgatcgag cgcgcaggct tcggcgaaca cttcgtcacg cgcacgggcc actccatcgg
     8641 cgaggaggtt cacggcaacg gcgccaacat tgacaacctc gagacgccgg acggccggag
     8701 catcacgcgc cgcacatgct tctccatcga gcccggcgtc tatcaggagg ggcgcttcgg
     8761 cctccgctcc gagatagacg tttacgtcgg cgacgacgac atagaggtga cggggcagcc
     8821 catacagacc gaggtcgtcg caatactcag ggattgacga tttcgaatta ctgattggaa
     8881 aagcgaagag ggttgacaac agcagcgccg tcgtcaaccc tctttttatt caacgacccg
     8941 aaatccgaaa tcgtcttagt cgtcgaggag tttgccgcgc aggaggggct ggccgccgag
     9001 cgaggtgtgg aaggcgtaaa gccccacccc cgcgcagacg gtcagcccgg ccgcgtagca
     9061 gacggcggcc aatgcgccca gcgtgcgcga ttcgggtttt tcgccacgag tcatggccg
//
LOCUS       DASPKR010000699        11346 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1149318, whole genome shotgun sequence.
ACCESSION   DASPKR010000699 DASPKR010000000
VERSION     DASPKR010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 11346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11346)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11346
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1149318"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..489
                     /locus_tag="VD968_18345"
     CDS             <1..489
                     /locus_tag="VD968_18345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004585059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HYE16405.1"
                     /translation="ELKEKKARVEDAMHATRAAVEEGIVPGGGVALVRAAKALDKFRV
                     GDEREVDQDEQIGVTIVRRALEEPLRQIVSNAGKEGAVIVEKVRESKKESYGYNAATE
                     TFGDLVDEGVIDPAKVTRSALQNAASIAGLMLTTEAMVSELPEEDKAPAMPGGMGGGM
                     GM"
     gene            647..1153
                     /locus_tag="VD968_18350"
     CDS             647..1153
                     /locus_tag="VD968_18350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16406.1"
                     /translation="MTPNPHNQPAETGRPPIVRYGCGLPALGLALLSAFFVIAAVSDM
                     VINRDPKETPVLIGMAFLFGAATALCLFVARHFLRKVPAPPNVDTENRILQLAYQRGG
                     RLKVSFVALHCRLSIEESRTWLERMASQGVAVPEVDDDGNIAYAFPELLPERRAPEAL
                     TGGTQQKP"
     gene            complement(1154..2359)
                     /locus_tag="VD968_18355"
     CDS             complement(1154..2359)
                     /locus_tag="VD968_18355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16407.1"
                     /translation="MNFDENIFFERYRQVFGPLGQYQADGLTKMLEYSEKDQSFTSTR
                     QLAYAYATVQRETNVSGTVNGRRELLTYNPITELGGRDYITRHYENRRDLGNTQPGDG
                     WKYRGRGYVQITGRTNYTKFGRLLGVDLVDDPDLALRPDIAWEILSLGMHQGLFTGKK
                     LSDYIPLDDRTRADYFNARRIINPGEIRVRPDVVQQMAQNAVKWEAILRSALLPDTAI
                     VGEPVLPTTIGAMPSEADDEAAPHPAGSDTALATVPTNGGPGYSLEPAPYSTGAADYT
                     ATPPVAGSTLGLSTVGPAAAPATKQQSAAQTGDGSQPGVTQPAPMRQTDFLQASVGSV
                     KRLWAFVAGLVATAGSSVFAFVKSNPWVIIAAIAGVVVLVVYYLHIQRDLDKERMRLA
                     ANPNTENVR"
     gene            complement(2475..3044)
                     /locus_tag="VD968_18360"
     CDS             complement(2475..3044)
                     /locus_tag="VD968_18360"
                     /inference="COORDINATES: protein motif:HMM:NF014038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class IV adenylate cyclase"
                     /protein_id="HYE16408.1"
                     /translation="MGVEIEKKYRLTGAEWESLRARLAEVGAEPRGAEAFEENTIYTG
                     PGLDPHRRVLRLRRVGGRAVFTFKEREPTESAVKRQREEETEVSDADGLAAILDALGY
                     RPALVYEKRRTTWRVAGAEVVVDELPFGLFVEIEGEEETILEAEALLGLAGAEAEHAP
                     YPALTARHGTDRGGVVEARFPPAHGGEIV"
     gene            complement(3073..4419)
                     /locus_tag="VD968_18365"
     CDS             complement(3073..4419)
                     /locus_tag="VD968_18365"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16409.1"
                     /translation="MTRKLLAIIRREYVQGVRGKSFIISTLFAPLFMLFFLIVPGLLF
                     AMKTGDDTRLAVVDLTGRMHAQVRDAVTHDGPEGPSGPGADERAAEGLKGGGRGPRGE
                     EFAQARFRVEEVAAAGRPLEEIKAELRRRVLREELDAYLVLPADVLETGRAELYARNT
                     GDVITLGTLENRLGRAVIEQRMRDENIDERRVRELSSEVTLERTRVTEGGEERDDGGA
                     FFFAIGVGTFVLIAIMMYGQAILSAVVEEKTTRIVEVLFSSVNAFTLLAGKLAGLALV
                     ALTQFAIWGLMFLGVTLYGAGAAAGSGLSLPDIPASAYIYALLFFMLGFFVYSTIYAV
                     IGSIVTTEKEASQIVVPVSFLPVVAIYLAFPVIRSPGSDFAFWVSLVPFFSPVTMLVR
                     IVTETPPLWQIALSFAVGAATVVVMVWVAGRIYRTGMLMYGKRATIPEIVRWARRP"
     gene            complement(4416..5330)
                     /locus_tag="VD968_18370"
     CDS             complement(4416..5330)
                     /locus_tag="VD968_18370"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE16410.1"
                     /translation="MSDQQAPALRLEGVTKRFDEFTAVSDLSLTALSGRIYGLIGPNG
                     AGKTTTIRMIVGITAPDEGRVELFGRPAGPETQNRIGYLPEERGLYKKMKVGEQLRFF
                     GELKGMSGRDADRAAGRWLERLKLSDRRAARTDSLSKGMQQKVQFIATVMHDPDLLIL
                     DELFSGLDPVNVELMKEVVLELKAAGRAIIFSTHMMEHAEKLCDDICLINRSRKVLEG
                     RLREVKESFSRNSVALRAEGGDGVLADARLVASVKPHGDYVEALLAEGADAQELLRAL
                     VAAGARVSKFEHVEPSLHDIFIAKVGEA"
     gene            5508..7667
                     /locus_tag="VD968_18375"
     CDS             5508..7667
                     /locus_tag="VD968_18375"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE16411.1"
                     /translation="MLSEKTYRKRLSVSLLFTLCLPAPALGRQQQPAAPAQGDGEEVI
                     RISSELVQTDVMVFGKDGKFVEGLKPEQFVLKVEGKERPVVFFERIVAGSVDEDAQLA
                     AARGGRREGGAVRPLDRGRSVIFFVDDLHLSPGSSMRMRDALLRFIDEEVGQNDEAQV
                     ASASGQVGFLQQFTDNKAVLRAAARRLNSRASVLRDGQYPPMSEVQALAVERYDPIVT
                     NFFVEHLRRENPALRRDIAERMVQSRAGQLLLQSNALAVRTLASLEGIIRDSAPLPGR
                     KVLFFISDGFVMDSPSGDLRDRMRRIADAAARASVVIYSLDGEGLRTNQPGADQVVAF
                     DPSGQLSTVNMSEGSTMQAPLYTLALETGGRALVNTNAALKAVSGALKETGRYYLLAW
                     RPEGAEARASKYQRVEVTLRDRPDLKVVVRRGFFTAPQPDEEASRRKKSKKEDGEAGK
                     TQAERELTAAIQSHFPRRALPTLVSLGYMNSPAEGTLLNVSVEVDPEAVAADPALKNG
                     GTFDLAVAIFDDKGKAVGGSRHELTLTPAPPPPARRSPVMFNLPVPLAEPGLYQVRVA
                     TRDRRSGRAGSAMEWIEVPDLKKGQLSLSSVFLAERAKQAATGQPASAQDALISIDRR
                     FSRDSFMRFGTVIYNAATAQPDVALQVQIFRDDQPVFTAPLSKLQTQGFPDTLRIPYA
                     AELSLAGFPAGRYALKITAIDRAAKSSASQRVNFIIE"
     gene            complement(7727..9355)
                     /gene="serA"
                     /locus_tag="VD968_18380"
     CDS             complement(7727..9355)
                     /gene="serA"
                     /locus_tag="VD968_18380"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: protein motif:HMM:TIGR01327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HYE16412.1"
                     /translation="MTEAGREEGAAAKIFVADDVNESGLEPLRAAGLRVEKRTGLKGE
                     ELAEAVRGADGLVVRSETKVTAELMESAPRLRVIGRAGVGVDNIDVPAATQRGVVVMN
                     APDGNTITTAEHTMALLLALARRVPQGNASLKAGRWERKKFVGVELRGKTLGVVGLGR
                     IGRVVARCARGLEMRVVAFDPFVAPEQLRDEGVELLPLEEVCARADFVTVHAPLTPET
                     RGIIGARELSMMKEGVRVINCARGGLVDERALHAAIKEGRVAGAALDVFEQEPPDADN
                     PLIALEEVVATPHLGASTKEAQEGVAVIVAEQMRDFFLTGAVRGAVNLPALGAQELTA
                     LGPYVWLAERLGRFHAQLIDEPVREVEIEYAGEAADLDASPVTRAFLAGLLGKVSARV
                     NVVNALLIADERGIAVKDSYRRGGAAGEMTPPVRTRVRTTAGEHTVSGALFGAQSDGR
                     IVEIDGFNIEVIPAGNVLVTRSSDVPGVIGRVGTCLGNHGVNISRFHLGRRVRGGEAM
                     AVIEADAPPDDETLAELRSFPEVFSARRIDLGKE"
     gene            complement(9370..10035)
                     /locus_tag="VD968_18385"
     CDS             complement(9370..10035)
                     /locus_tag="VD968_18385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16413.1"
                     /translation="MLTSGKPGREALCCLVVLALGCIASAQSGRRGTKSSAAAVEAAA
                     QPSPTPAKAEAAKEPAAKIKLVVGGSLPRGATDRAAVIYNNFVMTLTASPLVEVASVG
                     ALTRAAAVARARGEAETYVVLVEMTKDSFQNGSVMINSQDLKVSFTAFEPVTGKAKGK
                     GKLYYQAMGGGGNRSAGGVGDTPVKITPEAAGEELAEMVLAWLARPENRPAKPPAGPA
                     PKN"
     gene            complement(10056..10286)
                     /locus_tag="VD968_18390"
     CDS             complement(10056..10286)
                     /locus_tag="VD968_18390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16414.1"
                     /translation="MADEKAPETPQGETPERDAEATSSETLADIEEAEKVPSGGSGSG
                     SSSGGSLEGATPRPGSGSGEGRADGSDTGGPM"
     gene            complement(10303..10908)
                     /locus_tag="VD968_18395"
     CDS             complement(10303..10908)
                     /locus_tag="VD968_18395"
                     /inference="COORDINATES: protein motif:HMM:NF016489.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HYE16415.1"
                     /translation="MRKESSDALGGPVAAGVVPALRRGRRSARDYAALAVATCGVGFM
                     PLAPGTWGSAVGVGVYLLVRWSSTAVFSWAEARGVSLPPLEAFRTTFELALIITVTLA
                     GTWAATHCEKLSGRKDPGLVVVDEVAGQLITFLFVPWDAGLWAIVAGFLAFRLFDIWK
                     PYPINRLEALESGLGVMADDVLAGAYAATLMSLLTSIYLLF"
     gene            complement(10930..>11346)
                     /locus_tag="VD968_18400"
     CDS             complement(10930..>11346)
                     /locus_tag="VD968_18400"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HYE16416.1"
                     /translation="GETEDDFEELRAFVRSVEFDRVGVFTYSDEEGTPAFGLPDKVDA
                     RVARRRRTALMREQERISKRKNKGLVGSTLRVLFEGASRETDLLWQGRAETQAPDIDG
                     CVLINDAPEGTRPEPGDFVNVRITGALAHDLLGEIV"
BASE COUNT         1726 a         4032 c         3780 g         1808 t
ORIGIN      
        1 gagctgaagg agaagaaggc gcgcgtcgag gacgcgatgc acgccacgcg cgcggccgtc
       61 gaggagggca tcgtgccggg cggcggcgtc gcgctcgtgc gcgcggccaa ggcgctcgac
      121 aagttccgcg tcggcgacga gcgcgaggtt gaccaggacg agcagatcgg cgtcaccatc
      181 gtgcgccgcg cgctcgaaga gcccctgcgc cagatcgtct cgaacgccgg caaggagggc
      241 gcggtcatcg tcgagaaggt gcgcgagtcc aagaaggagt cctacggcta caacgcggcg
      301 accgagacct tcggcgacct cgtggacgag ggcgtcattg acccggcgaa ggtcacgcgc
      361 tccgctctcc agaacgccgc ctccatcgcg ggcctgatgc tcacgaccga ggcgatggtc
      421 tcggagttgc ccgaagagga caaggcccct gccatgcccg gcggcatggg cggcggcatg
      481 ggcatgtaat tcgagcccgc gtgccggaag gcaaaaaaga aacggcggcg actccaaacg
      541 gagtgcgccg ccgtttcttt cacatccact cggcaggctc ggcttgaaag ggcgtcggcg
      601 cgcgtactat actcacgcgc cgtcaggccg ttagagcccc tttccgatga cccccaaccc
      661 gcacaatcag cccgccgaga ccgggcgccc gcctatagtc aggtacggct gcgggctgcc
      721 tgcgctgggc ctcgcgctcc tgagcgcctt cttcgtcatc gccgccgtct ccgacatggt
      781 gatcaaccgc gacccgaagg agacgccggt gctcatcggg atggccttcc tcttcggggc
      841 cgcgacggcg ctctgcctct tcgtcgcgcg ccacttccta cggaaagtcc ccgccccgcc
      901 caacgttgac accgagaacc gcatactcca attggcctac cagcgcggcg ggcggctcaa
      961 ggtctcattc gtcgcgctgc actgccgcct cagcatagag gagagccgca cctggctcga
     1021 gcgcatggcc tcgcagggcg tcgccgtccc cgaggttgac gacgacggca acatcgccta
     1081 cgccttcccc gagctcctgc ccgagcgccg cgcgcccgag gccctcacgg gcggcactca
     1141 gcaaaagccc tagctacctg acgttctccg tgttcgggtt cgctgcgagg cgcatgcgct
     1201 ccttgtcgag gtcgcgctgt atgtgcaggt aatagacgac gagcacgacc acgcccgcga
     1261 tggccgcgat gatgacccac gggttcgact tgacgaaggc gaagacgctg ctgccggccg
     1321 tcgccaccag gcccgcgacg aacgcccaga gcctcttgac gctgccgacc gaagcctgaa
     1381 ggaagtctgt ctgcctcatc ggggcgggct gcgtcactcc gggctgcgag ccgtcgccgg
     1441 tctgcgcggc cgactgctgc ttggtcgcgg gcgccgccgc cgggccgacg gtcgagagcc
     1501 cgagcgtcga gcccgctacc ggcggagtcg ccgtgtagtc agccgcgccc gtcgagtaag
     1561 gggccggctc cagtgagtag ccggggccgc cgttcgtagg caccgtggcg agcgccgtgt
     1621 cggagccggc cgggtggggc gcggcctcgt cgtctgcctc agaaggcatt gcaccgatgg
     1681 tcgtaggcag cacgggctca ccgactatcg ccgtgtcggg cagaagcgca gaccgaagta
     1741 tcgcctccca cttgacggcg ttctgcgcca tctgctgaac cacgtcgggg cgcacgcgta
     1801 tctcgccggg gttaataatg cggcgggcgt tgaagtagtc ggcgcgcgtg cggtcgtcga
     1861 gcgggatgta gtcgctgagc ttcttccccg tgaagagccc ctggtgcatg ccgagcgaga
     1921 gaatctccca ggctatgtcg ggcctgagcg ccaggtctgg gtcgtccacg aggtcaacgc
     1981 cgagcaggcg cccgaacttc gtgtagttcg tgcgccccgt tatctgcacg tagccgcggc
     2041 cgcggtactt ccaaccgtcg ccgggctgcg tgttgccgag gtcgcggcgg ttctcgtagt
     2101 ggcgcgtgat gtagtcgcgg ccgcccagct ccgtgatggg gttgtaggtg aggagctcgc
     2161 ggcggccgtt gacggtgccg gagacgttcg tctcgcgctg cacggtggcg taggcgtagg
     2221 cgagctggcg cgtgctcgtg aaggactggt ctttctccga gtactcgagc atcttcgtca
     2281 ggccgtcggc ctggtactgg ccgagcggcc cgaagacctg cctgtagcgc tcgaagaaga
     2341 tgttctcgtc gaagttcatc gtcgaagcct cccggtcgtc agggcgggtt gatgtgaagg
     2401 ccgtgctcgt cgccgcgcga gggcggcggc cgctggggct ggctcgggga cgatattctc
     2461 ggcgggcgcc gttgtcaaac gatttctccg ccgtgcgcgg gggggaagcg cgcctcgacg
     2521 acgcccccgc ggtcggtgcc gtggcgcgcg gtcaaagcgg ggtagggcgc gtgctcggcc
     2581 tccgcaccgg ccaggccgag cagggcttcg gcctcgagta tcgtctcctc ctcgccctct
     2641 atctcgacga agaggccgaa cggcagctcg tccacgacga cctccgcgcc tgctactctc
     2701 caggtcgtgc gccgcttctc atagacgagc gccggcctgt agcctaaagc gtcgagaatc
     2761 gcggcgagcc cgtcggcgtc cgagacctcg gtctcctcct cgcgctgccg ctttacggcc
     2821 gactcggtag gctctctctc cttgaaggtg aagacggcgc gcccgcccac gcggcgcagg
     2881 cgcagaacgc gcctgtgcgg gtcgagccca ggccccgtgt agatcgtgtt ctcctcgaaa
     2941 gcctccgcgc cccgcggctc ggccccgacc tcggcgagcc gcgcgcgcag ggactcccac
     3001 tccgcgcccg tcagcctgta cttcttctca atctctacgc ccatgcgtta atccttcccc
     3061 tccccccgag ctttacggcc gccgcgccca gcggacgatt tcggggatgg tggcgcgctt
     3121 gccgtacatg agcatccctg ttcggtagat gcgccccgcg acccagacca tcaccacgac
     3181 cgtcgcggcg ccgaccgcga acgagagcgc tatctgccag agcggcggcg tctccgtcac
     3241 tattcgcacc agcatcgtga cgggcgagaa gaaaggcacg agcgagaccc aaaaggcgaa
     3301 gtcggagccg gggctgcgta ttacggggaa agcgaggtag atcgcgacga cgggcaggaa
     3361 gctgacgggg acgacaatct ggctcgcctc cttctcggtc gtcacaatcg agccgatgac
     3421 ggcgtagatg gtcgaataga cgaagaagcc gagcatgaag aagagcagcg cgtagatgta
     3481 cgccgaggca gggatgtcgg ggagcgagag gcccgagccc gccgccgccc ccgcgccgta
     3541 gagcgtgacg cccaaaaaca tcagccccca gatcgcgaac tgcgttaagg cgacgagcgc
     3601 aaggcccgcg agcttgcccg ccagcagcgt gaaggcgttg acggaggaga agagcacctc
     3661 gacgatgcgc gtggtcttct cctcgacgac cgcggagagg atggcctgcc cgtacatcat
     3721 tatcgcgatg agaacgaagg tgccgacgcc gatggcgaag aagaaggcgc cgccgtcgtc
     3781 gcgctcctcg ccgccctccg tgacgcgcgt gcgctcaagc gtgacctcgc tcgaaagctc
     3841 gcgcacgcgc cgctcgtcta tgttctcgtc gcgcatgcgc tgctctatga cggcgcggcc
     3901 caggcggttc tccagcgtgc cgagcgttat cacgtcgccc gtgttgcgcg cgtaaagctc
     3961 ggcccttccc gtctccaaca catcggccgg gagcacgagg taggcgtcca gctcctcgcg
     4021 cagcacgcgc cggcgcagct cggcctttat ctcttcgagc gggcgccccg ccgcggcgac
     4081 ctcctcgacg cggaagcgcg cctgcgcgaa ctcctccccg cgcgggcctc ggccgccgcc
     4141 cttgaggccc tcggccgcgc gctcgtccgc gccaggcccc gacgggcctt cggggccgtc
     4201 gtgcgtgacc gcgtcgcgca cctgcgcgtg catgcggccc gtcaggtcaa cgacggcgag
     4261 gcgcgtgtcg tctcccgtct tcatggcgaa gagcaggccc ggcacgatga ggaagaagag
     4321 catgaagagg ggcgcgaaca gcgtcgagat gatgaaagac tttccgcgca cgccctgcac
     4381 gtactcgcgc ctgattatcg ccagcagttt tctcgtcacg cctcacccac tttcgcgatg
     4441 aagatgtcgt gcaggctcgg ctcgacgtgc tcgaacttcg agacgcgcgc gcccgccgcg
     4501 acgagcgcgc gcaggagttc ctgcgcgtcg gcgccctcgg ccagtagcgc ctcgacgtag
     4561 tcgccgtggg gcttcacgct cgccacgagc ctcgcgtcgg cgagcacgcc gtccccgccc
     4621 tcggccctga gcgccaccga gttccggctg aagctctcct tcacctcgcg cagccgtcct
     4681 tcgagcacct tgcgcgagcg gttaatcagg cagatgtcgt cgcagagctt ctcggcgtgc
     4741 tccatcatgt gcgtcgagaa gattatggcg cggcccgcgg ccttcagctc aagcacgacc
     4801 tccttcatca gctcgacgtt cacggggtcg agccccgaga acagctcgtc gagtatgagc
     4861 aggtcggggt cgtgcattac ggtcgcgatg aactgaacct tctgctgcat gcccttcgag
     4921 agcgagtcgg tgcgcgccgc cctgcggtcg gagagcttca ggcgctcgag ccagcgcccg
     4981 gccgcgcggt ctgcgtcgcg cccgctcatg cctttgagct cgccgaagaa gcgcaactgc
     5041 tcgccgacct tcatcttctt gtagaggccg cgctcctcgg gcaggtagcc gatgcggttc
     5101 tgcgtctcgg ggccggcggg ccggccgaac agctcgacgc ggccctcgtc gggcgcggtg
     5161 ataccgacga tcatgcggat tgtcgtggtc ttgccggccc cgttcgggcc gatcaggccg
     5221 tatatgcggc ccgaaagggc cgtcaggctg aggtcgctta cggccgtgaa ctcgtcgaag
     5281 cgcttggtca cgccttcgag gcgcagggcc ggtgcttgtt ggtcgctcaa gtgtttttct
     5341 agcggccgac gtccggggat ttgtacgagc gttccgaaaa ttatacgggg gcggcggatt
     5401 ttagttcagg ggctcgattt tacacggcgc gcgccgtttt cctcacgcgg cggcgcggcg
     5461 gcgtggtaag attttggcct gcatcccgta aggctggggt cacagacatg ctctccgaga
     5521 agacttaccg taagcgcctt tccgtctcgc tactcttcac cctctgcctg cccgcgccag
     5581 ccctcggccg tcaacagcag ccggccgccc ccgcgcaggg cgacggagag gaggtcatac
     5641 gcataagctc cgagcttgtg cagacggacg tgatggtctt cggcaaggac ggcaagttcg
     5701 tcgagggcct caagcccgag cagttcgtcc tcaaggtcga gggcaaggag aggcccgtcg
     5761 tcttcttcga gcgcatcgtc gcgggctccg tggacgagga cgctcagcta gccgccgccc
     5821 gcggcggccg ccgcgagggc ggcgcggtac gaccgctcga ccgcggccgc tccgtcatct
     5881 tcttcgttga cgacctgcac ctctcgcccg ggagctcgat gcgcatgcgc gacgcgctgc
     5941 tgcgcttcat agacgaggag gttggccaga acgacgaggc gcaggtcgcc tccgccagcg
     6001 gccaggtagg cttcctacag cagttcacgg acaacaaggc cgtgctgcgc gccgccgcgc
     6061 ggcgcctcaa ctcccgcgcc tcggtgctgc gcgacgggca gtacccgccc atgagcgagg
     6121 tgcaggcgct cgccgtcgag cgctacgacc ccatagtgac gaacttcttc gtcgagcacc
     6181 ttcgtcgcga gaacccggcg ctgcgcaggg atatcgccga gaggatggtg cagtcgcgcg
     6241 caggccagct cctactacag tcgaacgcgc tggccgtgcg cacgctggcc tcccttgaag
     6301 gaatcatacg cgactcggcg ccgctgcccg gccgcaaggt tctcttcttc atctcggacg
     6361 gcttcgtgat ggactcgccc agcggcgacc ttcgcgaccg catgcggcgc atagcggacg
     6421 ccgcggcgcg cgccagcgtc gtcatctact cgctcgacgg cgaggggctg cgcacgaacc
     6481 agccgggcgc ggatcaggtc gtcgccttcg acccctcggg ccagctctcg accgtgaaca
     6541 tgagcgaggg ctcgacgatg caggcgccgc tctacacgct cgcgctagag acgggcgggc
     6601 gcgcgctcgt caacaccaac gcggccctga aggccgtctc gggcgcgctc aaggagacgg
     6661 gccgctacta cctgctggcg tggaggccgg aaggggcgga ggcgcgcgcc tcgaagtacc
     6721 agcgcgtcga ggtcacactt cgagaccggc ccgacctgaa ggttgtagtc cgccgcgggt
     6781 tcttcaccgc gccgcagcct gacgaggagg cttcgcgcag gaagaagtcg aagaaggagg
     6841 acggcgaggc cgggaagacg caggccgagc gcgagctgac ggccgcgatt cagtcgcact
     6901 tcccgcggcg cgctctgccg acgctcgtct cgctcggcta catgaactcg ccggccgaag
     6961 ggactctgct gaacgtctcg gtcgaggttg accccgaggc cgtcgccgcc gacccggcgt
     7021 tgaagaacgg tggcacgttc gacctcgccg tcgcgatctt tgacgacaag gggaaggcag
     7081 tcggcggctc ccgccacgag ctgacgctca ccccggcgcc gcccccgccc gcgcgccgct
     7141 cgcccgtgat gttcaacctg cccgtcccgc tcgccgagcc cggcctatac caggttcgcg
     7201 tcgccacgcg cgaccgccgc agcgggcggg ccggcagcgc catggagtgg atagaagtcc
     7261 cagacctgaa gaaggggcaa ctgtctttga gcagcgtctt cctcgccgag cgcgcgaagc
     7321 aggccgcgac gggccagccg gcctccgcgc aggacgccct gataagcatt gaccggcgct
     7381 tctcgcgcga ctccttcatg cgcttcggca cggtcatcta caacgcggcg accgcgcagc
     7441 ccgacgttgc cttacaggtt cagatattcc gcgacgacca gccggtcttc accgccccct
     7501 tgagcaaact ccagacccag gggttccccg acactctccg catcccctac gcggccgagc
     7561 tctcgctcgc gggcttcccc gccggccgct acgccctaaa gatcacggcc atagaccgcg
     7621 ccgccaagag cagcgcctcc caaagagtca acttcatcat cgagtgaggc tgaaggcggg
     7681 actgacgggg ccgcccgcaa tcacattgcg ggcggcccct ctccgtttac tctttcccga
     7741 ggtctatgcg gcgagcggag aagacttcgg ggaaggagcg aagctcggcg agcgtctcgt
     7801 cgtccggggg cgcgtcggcc tctatgacgg ccatcgcctc gccgccgcgc acgcgcctgc
     7861 ccaggtggaa gcggctgatg ttgacgccgt gattccccaa gcaggtgccg acgcggccga
     7921 tgacgcccgg cacgtcgctg cttctggtga cgaggacgtt gccggccggg atgacctcga
     7981 tgttgaagcc gtcaatctct acgatgcgcc cgtcggactg cgcgccgaag agcgcgcccg
     8041 agacggtgtg ctcgcccgcg gtcgtgcgga cgcgcgtgcg gacgggcggc gtcatctcgc
     8101 ccgccgcgcc gccgcgccgg taggagtcct tgacggcgat gccgcgctcg tcggcgatga
     8161 gcagggcgtt gacgacgttg acgcgcgcgc tcaccttccc cagcagcccc gcgaggaagg
     8221 cgcgcgtcac gggcgaggcg tcgaggtcgg cggcctcgcc cgcgtactct atctcgacct
     8281 cgcgcaccgg ctcgtctatg agctgcgcgt ggaagcggcc gagacgttcg gccagccaga
     8341 cgtaaggccc gagcgccgtc aactcctgcg cgccgagggc gggaaggttg acagcccccc
     8401 gcaccgcccc cgtcaaaaag aagtcgcgca tctgctcggc gacgatgacg gccacgccct
     8461 cctgcgcctc cttcgtcgag gcgccgaggt gcggcgtcgc caccacctct tcgagcgcga
     8521 tgagcgggtt gtccgcgtcg ggcggctcct gctcgaacac gtcgagcgcg gcgcccgcga
     8581 cgcgcccctc cttgatggcg gcgtggagcg cgcgctcgtc caccagcccg ccgcgcgcgc
     8641 agttgatgac gcgcacgccc tctttcatca tcgaaagctc gcgcgcgccg atgatgccgc
     8701 gcgtctcggg cgtcagcggg gcgtggactg tgacgaagtc ggcgcgcgcg cagacctctt
     8761 cgagaggaag aagctcgacg ccctcgtcgc gcaactgctc gggcgcgacg aacggatcga
     8821 aggcgacgac gcgcatctcg aggccgcggg cgcacctcgc aacgacccgc ccgatgcgcc
     8881 cgaggccgac gacgcccagg gtcttgccgc gcagctcgac gcccacgaac ttcttccgct
     8941 cccaccggcc ggccttcagg ctcgcgttgc cctgcggcac gcggcgcgcg agcgccaaga
     9001 gcagcgccat cgtgtgctcg gccgtcgtga tggtgttgcc gtcgggcgcg ttcatgacga
     9061 cgacgccgcg ctgcgtcgcg gccggcacgt ctatgttgtc aacgccgacg cccgcgcggc
     9121 ctatcacgcg caggcgcggg gccgactcca tcaattcggc cgtcaccttc gtctcgctgc
     9181 gcaccacgag cccgtcggcg ccccgcacgg cctcggcaag ctcttcgccc ttgaggcccg
     9241 tcctcttctc cacgcgcagg cccgcggcgc gcagaggctc tagcccgctc tcgttcacgt
     9301 cgtcggcgac gaagattttc gccgccgcgc cttcttccct gcccgcttcg gtcatccgtg
     9361 ctcctgaact taatttttcg gcgccggccc cgcggggggc ttcgccggcc ggttctccgg
     9421 ccgcgccagc cacgcgagca ccatctcggc aagctcttcg cccgcggcct cgggtgtgat
     9481 cttgacgggc gtgtcgccga cgccgccggc gctgcggttc ccgccgccgc ccatcgcctg
     9541 gtagtagagc ttccccttcc ccttcgcctt gcccgtcacg ggctcgaacg cggtgaagct
     9601 caccttcagg tcttgcgagt tgatcatgac gctgccgttc tggaagctgt ccttcgtcat
     9661 ctctacgagg acgacgtatg tctccgcctc gccgcgcgcg cgcgccacgg ccgccgcgcg
     9721 cgtgagcgca ccgaccgaag cgacctcgac gagcggcgac gccgtgagcg tcatcacgaa
     9781 gttgttgtag atgacggcgg cgcggtcggt cgcgcccctc ggcagcgacc cgccgacgac
     9841 gagcttgatc ttggccgcag gctccttggc ggcctcggcc ttagcgggcg tgggcgaagg
     9901 ctgcgccgcg gcctcgactg ccgccgccga actcttcgtg ccgcgccgcc ccgactgcgc
     9961 cgacgcgatg cagccgagcg ccaaaacgac taagcagcac agggcttccc gcccgggctt
    10021 tccactggtg agcataaaac tcgcactcct tcttttcaca tcggcccgcc ggtgtcgctg
    10081 ccgtccgcgc gcccctcgcc ggagccggag ccggggcgcg gcgtcgcgcc ttcgagcgag
    10141 ccgccgctgc tggagcccga gccgctgccg ccgctcggaa ccttctccgc ctcttcgatg
    10201 tcggcgagcg tttcgctgct ggtcgcctcg gcgtcgcgct cgggcgtctc gccctgcggc
    10261 gtctcggggg ccttctcgtc tgccatctcg ttttcctccc cttcagaaca gaaggtagat
    10321 tgaggtcagt agcgacatca gcgtcgcggc gtatgcgcct gcgagcacgt cgtcggccat
    10381 cactcccagc cccgactcaa gcgcttcgag cctgtttatc gggtacggct tccagatatc
    10441 gaatagcctg aaggcgagga agcccgcgac tatcgcccag aggccggcgt cccacggcac
    10501 gaagagaaac gttataagct gcccggccac ttcgtcaacg acgaccagcc cggggtcttt
    10561 ccgccccgaa agcttctcgc agtgcgtcgc cgcccaagtg ccggccagcg tgaccgttat
    10621 gattagcgcg agctcgaatg tcgtgcggaa ggcttcgagc ggcggcaggg acacgccgcg
    10681 cgcctccgcc caggagaaga ccgccgtgct cgaccagcga accagcagat agacgcccac
    10741 gccgacggcc gagccccacg tgccgggcgc gagcggcatg aagccgaccc cacacgtcgc
    10801 gaccgccagc gcagcgtagt cgcgcgctga gcgacggccg cgcctgagcg ccggcacgac
    10861 gcccgccgcg acggggccgc ccagcgcgtc gctcgattcc tttcgcataa gaggcggggc
    10921 gagagcgccc tagacaatct cgccgagcag gtcgtgcgcg agcgcgccgg tgatgcggac
    10981 gttcacgaag tcgccgggct cgggccgcgt accctcgggc gcgtcgttga tgaggacgca
    11041 gccgtctatg tcgggagcct gcgtctcggc gcgcccctgc cagagcaggt cggtctcgcg
    11101 cgaagctccc tcaaacagca cgcggagggt ggagcccacg agccccttgt tcttcctctt
    11161 cgagatgcgc tcctgctccc tcatcagcgc cgtgcggcgc ctgcgcgcga cccgcgcgtc
    11221 aaccttgtcg ggcaggccga aggcgggcgt gccttcctcg tccgagtagg tgaagacgcc
    11281 gacgcggtcg aactcgaccg agcggacgaa ggcgcgcagc tcctcgaagt catcctcggt
    11341 ctcgcc
//
LOCUS       DASPKR010000700         6635 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1408406, whole genome shotgun sequence.
ACCESSION   DASPKR010000700 DASPKR010000000
VERSION     DASPKR010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6635)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6635
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1408406"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..201)
                     /locus_tag="VD968_18405"
     CDS             complement(<1..201)
                     /locus_tag="VD968_18405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16417.1"
                     /translation="MSLEFAIEYPCALRARYDEEHLRAWGRLGSLHTRLTTGEANAPS
                     EEKVRFVERAAGEIERMRGEVGI"
     gene            353..1696
                     /locus_tag="VD968_18410"
     CDS             353..1696
                     /locus_tag="VD968_18410"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HYE16418.1"
                     /translation="MATALEAPGPRAKWPGGHMLAFRRDPLAFLGRTAREHGDVSQFR
                     VGPQQFFLLNHPDLIRDVLVTHNERFHKGRALQRAKRLLGEGLLTSEGEFHRRQRRLA
                     QPAFHRQRVNSYARVMVEHAARASARWRDREELDISEEMMRLTLSIVGKTLFDADVES
                     DADEVGEALTDVMELFNYLVLPYSELLEKLPLPASRRFRRARARLDAVIYRIIEERRR
                     SGADRGDLLSTLLLAVDEEGGGGRMTNEQLRDEVMTLFLAGHETTANALTWAWHLLAQ
                     NPEAETRLHEELDSVLGGREPTAEDVPSLPFTERVVAETMRLYPPAWAIGRLAIEDHE
                     AGGYLVPRGALVLVSQYVTHRDARFFPDPERFDPDRFTPEAKAERPQFAYFPFGGGPR
                     RCIGEGFAWMEATLLLAALAGRWRVRLLPGRTVRTQPLITLRPGKGGVPVRLERR"
     gene            1762..1962
                     /locus_tag="VD968_18415"
     CDS             1762..1962
                     /locus_tag="VD968_18415"
                     /inference="COORDINATES: protein motif:HMM:NF015899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HYE16419.1"
                     /translation="MAITAEFIETFRVVCPACRGRVELKRDGSGIKCLECRRVYPIRN
                     DIPALVVDEATIEEDDEPRNAG"
     gene            1937..3094
                     /locus_tag="VD968_18420"
     CDS             1937..3094
                     /locus_tag="VD968_18420"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HYE16420.1"
                     /translation="MTSRATQAEAATVAAAPAVAGDEPVPLGPPRWDWSEVRSVLVVR
                     LRSIGDTVLATPSLRALRRFLPQARIDVLLEDWVAPLLEGSEDVDRVVRVDRKNPVGR
                     LLVARALSAGRYDVAYDLHGGNTASLLTWASRARHRVGYAAYRSSRLFNHTAPPSSEL
                     WGREQTHSAEQQLALLGWTGVPVSDRPASRLPVTTGARESVAHKLSKVGIYEGREFAL
                     LHTAAAFDTKTWAAENFARVVEHLAERGLASVAVAAPHEGRAIDELRRHSRALLVSFT
                     DLKLPELTALASRARLFVGNDSGVAHIAAAVGVPQVVVFGSSNVAHWRPWARAPWEVV
                     REDMPCAPCAGYSCREFDAPECIRRVTPERVIEAVGRVISKSAAGARRRDF"
     gene            3120..4118
                     /gene="rfaE1"
                     /locus_tag="VD968_18425"
     CDS             3120..4118
                     /gene="rfaE1"
                     /locus_tag="VD968_18425"
                     /inference="COORDINATES: protein motif:HMM:TIGR02198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HYE16421.1"
                     /translation="MNQLTAERAGEIVGGVRGRAVVVYGDVMLDEFVWGDVTRISPEA
                     PVPVVDIRRESAHLGGAANVLANLRALGAEAAVVGVVGDDGAAERVRAGLREAGALSP
                     GETLVTDPGRPTTVKTRIIAHSQLVVRADRERRTHVDAAAEDRIIEALRGLVGRAAAL
                     VVSDYDKGAVTPRVLGEVLPLARRAGVPVLVDPKIRNFGAYRPATLITPNHHEALRLT
                     GSEDDTDEGVAAAARSILGRLGCDSVLITRGERGMMLLEAGGEPVYVPTVAREVFDVT
                     GAGDTVIATLAASLAAGATLAEAAELANHAAGVVVGKVGTATATPEEVLASFEVKR"
     gene            4115..4783
                     /locus_tag="VD968_18430"
     CDS             4115..4783
                     /locus_tag="VD968_18430"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYE16422.1"
                     /translation="MTTTRAHTFRFAAVAALLAALLPGCGRGVPESARAEPAPRPLTA
                     ALPAEEQQMGAEDEEMNRRPLKLPLTEPKIVVSKRARRLVLYSAGRPVRAYRVVLGFA
                     PEGDKVEQGDGRTPEGAFYVCMKNERSRFYLSLGLSYPDEEDAARGLRDGLITRAQHD
                     RIARAIRRKLTPPWNTRLGGEIFIHGGGTASDWTAGCVALENEHIKELFDSVPLGAAV
                     VINP"
     gene            4831..6495
                     /gene="dacB"
                     /locus_tag="VD968_18435"
     CDS             4831..6495
                     /gene="dacB"
                     /locus_tag="VD968_18435"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: protein motif:HMM:NF014200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0009002 - serine-type D-Ala-D-Ala
                     carboxypeptidase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HYE16423.1"
                     /translation="MSSRTRTASTLLSFALLLALLPAAPGAAAAAQAPQRERRVTRQA
                     PTPTPTPRATPTPQATPTPTATPTPTPASAAPATLEELRSRVREIISKPEFASSQLAV
                     KITSLDTGRVLFEENSQKWMQPASNMKLYTVAAALDRFGPDYRFVTSAYAPAPPDASG
                     TLRGDLVIYGRGDPTYATRFNPEGDKSYTRAIDELAASIAAAGVRRVEGDLVGDESYF
                     TGGPLAPGWEWDDLQWWYGAEVSALTVNDNSVDLSVAPGARPGDPCRIAVGPSTSLVT
                     IVDRTTTTPRGTPRELTVHRPLGQNTIEVSGSLPVDDRGYTASVAVSNPAMMFATMLR
                     TSLEARGVSFTGRTRTVGARERQAQPLAVSSLVEIAKRESPPLSLIAAQTMKPSQNLY
                     TELLLRALGKAASTDPRQTSDAAGIKVVHDFLRRTGADDSKLIMRDGSGLSRGNLVTA
                     DLTLALLVFMNRHPHGSVFRASLPVAGVDGTLRNRMRGTPAMSNARAKTGTLSSATSL
                     SGYVFSAANERLAFSMMINNPPRDSSGRTDFTDAVTVLLASFTGRS"
BASE COUNT         1013 a         2418 c         2243 g          961 t
ORIGIN      
        1 gatgccgacc tccccccgca tgcgctctat ctcgccggcc gcacgctcga cgaagcgcac
       61 cttctcttcc gaaggcgcgt tggcctcgcc ggtggtgagg cgcgtgtgga ggctgccgag
      121 acggccccag gccctcagat gttcctcgtc gtagcgcgca cgcagcgcgc aggggtactc
      181 gatagcgaat tccagggaca aaaaacttaa gctcccggcc cttccgtaaa gcccaccgct
      241 cgtttcgcga gggcgggcgt gaaagtataa taacaaagat tgccgtgaag tattaaaggg
      301 cggccccgag gcgcctaaac acaaggcttt taagccccga tcaagaggtt caatggcgac
      361 agcgctggaa gcgcccggcc cgagggcgaa gtggccgggc ggccacatgc tcgcgttccg
      421 gcgagacccg ctcgcattcc tcgggcgcac ggcgcgcgag cacggcgacg tgtcgcagtt
      481 ccgcgtcggc ccgcagcagt tcttcctcct gaaccaccca gacctcatac gcgacgtgct
      541 cgtcacgcac aacgagcgct tccacaaggg gcgcgccctc cagagggcga agcgcctgct
      601 cggcgagggc ctactgacga gcgagggcga gttccacagg cgccagcgcc gtctcgcgca
      661 gccggccttc caccgccagc gcgtgaactc ctacgcgcgc gtgatggtag agcacgccgc
      721 gcgcgcgtcg gcgcgctggc gcgaccggga ggagctggac atctccgagg agatgatgcg
      781 gctcaccctc tccatcgtcg ggaagaccct cttcgacgcg gacgttgagt cggacgccga
      841 cgaggtgggc gaggcgctga cggacgtcat ggagcttttc aactacctgg tgctccctta
      901 ctcggagctt ttggagaagc tcccgctccc ggcgagccga cgcttccggc gcgcacgcgc
      961 gcgcctcgac gccgtcatct accgcatcat cgaagagcgc cgccgctcgg gcgccgaccg
     1021 cggcgacctg ctctcaacgc tcctgctcgc cgtggacgag gaaggcggcg gcggacggat
     1081 gacgaatgag caactccgcg acgaggtgat gaccctcttc cttgccgggc acgagacgac
     1141 ggcaaacgcg ctcacgtggg cctggcactt gctcgcgcag aacccggagg ccgaaacgag
     1201 gctgcacgaa gagcttgatt cggtgctcgg cgggcgcgag ccgaccgccg aggacgtgcc
     1261 gtcgctcccg ttcacggagc gggtcgtggc cgagacgatg cggctctacc cgccggcgtg
     1321 ggcgataggg cggctggcga ttgaggatca cgaggcaggc ggctacctcg tcccccgcgg
     1381 cgcgctcgtg ctcgtgagcc agtacgtcac gcaccgcgac gcgcgcttct tcccagaccc
     1441 ggagcgcttc gacccagacc gcttcacgcc cgaggctaag gctgagcgcc cgcagttcgc
     1501 ctacttcccc ttcggcggag gcccgcgccg ctgcatcgga gagggcttcg cctggatgga
     1561 agcgacgctg ctgctggccg cgctcgcggg ccgctggcgc gtgcggctcc tgcccggccg
     1621 cactgtgcgc acgcagccgc tcatcacgct caggcccggc aagggcggag tccccgtcag
     1681 gcttgagagg cgctgattgc ctgccggttc tcggcgctgt taagcttgag cgccctcgcg
     1741 gcgatgagga ggcgaacgag tttggctata acggcggagt tcatagagac tttcagggta
     1801 gtgtgcccgg cgtgcagggg cagggtcgag ctgaagcggg acgggagcgg catcaagtgc
     1861 ctggagtgcc ggcgcgtcta tcccatcagg aacgacatcc ccgcgctcgt cgttgacgaa
     1921 gccacaatcg aagaggatga cgagccgcgc aacgcaggct gaagcggcga cggtcgcggc
     1981 cgcgcccgcc gtcgcgggcg atgagcccgt gccgctcggc ccgccgcgct gggactggtc
     2041 tgaagtccgc agcgtgctcg tagtgcgcct gcgctccatc ggcgacacgg tgctggcgac
     2101 cccgtctttg cgcgcgctca ggcgcttcct gccccaagcg cgcatagacg ttctgctcga
     2161 agactgggtg gcgccgctcc tcgaaggctc cgaggacgtt gaccgcgtcg tgcgcgttga
     2221 tcgcaagaac ccagtcggcc gcctccttgt cgcgcgcgcc ctcagcgccg ggcgctacga
     2281 cgtggcctac gacctgcacg gaggcaacac cgcttcgctt ttgacctggg cctcgcgcgc
     2341 gcgtcaccgc gtgggctacg ccgcctatcg cagctcgcgg ctgttcaacc acacggcgcc
     2401 cccgtcctcg gagctttggg ggcgcgagca gacgcactcg gcggagcagc agttggcgct
     2461 gctcgggtgg acgggagtcc ctgtcagcga ccggcccgcg tctcgcctgc ccgtcacgac
     2521 gggagcgcgc gagagcgtcg cgcacaaact gtcgaaggtc ggcatttacg aggggcgcga
     2581 gttcgccttg ctccacacgg cggccgcctt cgacacgaag acttgggcgg cagagaactt
     2641 cgcgcgcgtc gtcgagcacc tggccgagcg cggcctcgcc tcggtggccg ttgccgcgcc
     2701 gcacgaaggg cgcgcgattg acgaactgag gcgccactcg cgcgccctgc tcgtctcctt
     2761 cacggacttg aagctgcccg aattgacggc gctcgcgtcg cgcgcccgtc tcttcgtcgg
     2821 gaacgacagc ggcgtggcgc acatagccgc cgctgtcggc gtgccgcagg tcgtcgtctt
     2881 cggctcgtcg aacgtggcgc actggcggcc ctgggcgcgt gcgccgtggg aggtcgtgcg
     2941 cgaggatatg ccgtgcgcgc cctgcgccgg ctatagctgc cgggagttcg acgcgcccga
     3001 gtgcatacgc cgcgttacgc ccgagcgcgt catcgaggcg gtcggccgcg tcatctcgaa
     3061 atcggcggcg ggcgcgcgga ggcgggattt ttagctcgtc tctccccgct tcttcttcta
     3121 tgaaccagct tacggcagag cgcgcgggcg agatcgtcgg cggcgtgcgc gggcgggcgg
     3181 tcgtcgtcta tggcgacgtg atgctcgacg agttcgtctg gggcgacgtg acgcgcatct
     3241 cgcccgaggc gcccgtcccc gtcgtggaca tacggcgcga gtcggcgcac ctgggcggcg
     3301 ccgcgaacgt gctcgcgaac ctgcgcgcgc tcggggcgga ggcggccgtc gtcggcgtcg
     3361 tgggcgacga cggcgctgcc gagcgcgtgc gcgcggggct tcgggaggcc ggcgcgctct
     3421 cgcccggcga gacgctcgtg accgacccgg ggcggcccac caccgtcaag acgcgcatca
     3481 tcgcgcacag ccaactggtc gtgcgcgccg accgcgagcg gcgcactcac gttgacgccg
     3541 cggcggaaga ccgcatcata gaagcgctgc gcggcctcgt cgggcgcgcg gcggcgctcg
     3601 tcgtctccga ctacgacaag ggcgccgtca ccccccgcgt gctcggcgag gttctgccgc
     3661 tcgcgcgccg cgcgggcgtc cccgtcttgg ttgacccgaa gattcgcaac ttcggggcgt
     3721 accgcccggc gacgctcatc acgccgaacc accacgaggc gctgaggctg acgggctcgg
     3781 aggacgacac ggacgaaggc gtcgccgcgg ccgcgcgctc gatactcggc cgactgggct
     3841 gcgacagcgt gctcatcacg cgcggcgagc gcggcatgat gctgctggaa gcgggcggcg
     3901 agccggtcta tgtgccgacc gtggcgcgcg aggtcttcga cgtcacgggc gcgggcgaca
     3961 ccgtcatcgc gacgctggcc gcctcgctcg cggccggcgc gacgctcgcc gaggccgccg
     4021 agctcgccaa ccacgccgcc ggagtcgtcg tcggcaaagt cggtacggcc acggcgacgc
     4081 ccgaagaggt gctggcctcc ttcgaggtca aacgttgacg acaacgcgcg cacacacgtt
     4141 ccgcttcgcc gccgtcgccg cgctcctcgc ggcccttctg ccgggctgcg ggcgcggcgt
     4201 ccccgagagc gcgcgcgcag agccggcgcc ccggccgctg acggccgcgc tgccagccga
     4261 agaacagcag atgggtgccg aagacgagga gatgaaccgc cgcccgctca agctccccct
     4321 gaccgagccg aagatagtcg tgtcgaagcg ggcgcgccgc ctcgtgctct actccgcggg
     4381 ccggcccgtg cgcgcatacc gcgtcgtgct cggcttcgcg cccgagggcg acaaggtcga
     4441 gcagggcgac ggccgcacgc ccgaaggcgc cttctacgtt tgcatgaaga acgagcgcag
     4501 ccgcttctat ctgtcgctgg gcctgagcta cccggacgag gaggacgccg cgcgcggcct
     4561 gcgcgacggc ctcatcaccc gcgcgcagca cgaccgcatc gcccgcgcga taaggcgcaa
     4621 actcacgccg ccctggaaca cgaggctcgg cggcgaaatc ttcatacacg gcggaggcac
     4681 ggcctccgac tggacggccg gctgcgtcgc cctcgagaac gagcacataa aagaactctt
     4741 cgactcagtc ccgctcggcg ccgcggtcgt catcaaccct tagccatcag cctttaaatt
     4801 tcaagcaggt aagacttcga gccagcagtc atgtcatcaa gaaccagaac ggcaagcact
     4861 cttctctctt tcgcgctcct cctggcgctt ctgcccgccg cgccgggcgc cgccgcggcg
     4921 gcgcaggccc cgcagcgcga gcgccgcgtc acccgacagg ccccgacgcc gaccccaacg
     4981 ccccgcgcga cgcccacgcc gcaggccacg ccgacgccaa cggcgacacc gaccccgaca
     5041 cccgcgtcgg ccgcgcccgc cacgctcgaa gagctgcgct cgcgcgtgcg cgagatcatc
     5101 tcgaagccgg agttcgcctc ctcgcagctc gccgtcaaga taacctcgct cgacacgggc
     5161 cgcgtgctct tcgaggagaa ctcgcagaag tggatgcagc cggcctcgaa catgaagctc
     5221 tacacggtcg ccgccgcgct cgaccgcttc ggccccgact accgcttcgt cacctccgcc
     5281 tacgcgcccg cgccccccga cgcgtccggc accctgcgcg gcgacctcgt catttacggc
     5341 cgcggcgacc cgacctacgc cacacgcttc aaccccgagg gggataagag ctacacgcgc
     5401 gccatagacg agctggccgc gagcatcgcc gcggcgggcg tgcgccgcgt cgagggcgac
     5461 ctcgtcggcg acgagagcta cttcacgggc gggccgctcg cgcccggctg ggagtgggac
     5521 gaccttcagt ggtggtacgg cgccgaggta agcgccctga ccgtcaacga caactccgtt
     5581 gacctctctg tcgcgcccgg cgcgcgcccc ggcgacccct gccgcatcgc cgtcggcccc
     5641 tcgacctcgc tcgtcacgat agttgaccgc acgacgacca cgccccgcgg cacgccccgc
     5701 gagcttacag tccaccgccc gctcgggcag aacaccatcg aagtctcggg cagcctaccg
     5761 gttgacgacc gcggctacac ggcgagcgtc gccgtctcga acccggccat gatgttcgcg
     5821 acgatgctgc gcacgtcgct cgaagcgcgc ggcgtcagct tcacgggccg cacccgcacg
     5881 gtgggcgcgc gagagcggca ggcgcagccg ctcgcggtct cctcgctcgt cgagatagcc
     5941 aaacgcgagt cgccgccgct ctccctcatc gccgcgcaga cgatgaagcc gagccagaac
     6001 ctctacaccg agctactgct gcgcgctttg gggaaggccg cctcgaccga cccgaggcag
     6061 acgagcgacg ccgccggcat caaggtcgtc cacgacttcc tgcgccggac gggcgccgac
     6121 gactcgaagc tgataatgcg cgacggctcg ggcctctcgc gcgggaacct ggtgacggcc
     6181 gacctgacgc tcgccctcct tgtcttcatg aaccgccacc cgcacggctc tgtcttccgc
     6241 gcctcgctcc ccgttgcggg cgttgacggc acgctgcgta accgcatgcg aggcacgccc
     6301 gccatgtcga acgcgcgggc gaagacgggg acgctcagca gcgcaacctc gctctcgggt
     6361 tacgtcttca gcgccgcaaa cgagcgcctg gccttctcca tgatgataaa caaccccccc
     6421 cgcgactcgt ccggccgcac ggatttcacc gacgccgtaa cagtcctgct ggcctccttc
     6481 accggaaggt cgtgaatgcg cttcgtcaag ttccacgggt acgggaacga ctacctcgtg
     6541 ttcgaggcgg gcgagctcgc gcccgcgggg tggcggggcg gcttcgagcg gctgggcgag
     6601 tttaacccct tcgtcgagtt cgtgcggcgc gtgtg
//
LOCUS       DASPKR010000701         2673 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1409050, whole genome shotgun sequence.
ACCESSION   DASPKR010000701 DASPKR010000000
VERSION     DASPKR010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2673)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2673
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1409050"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..923
                     /locus_tag="VD968_18440"
     CDS             <1..923
                     /locus_tag="VD968_18440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16424.1"
                     /translation="RRNCVLVRVARRLEEIGTRAPAFFDEAAEEEGRRARAMFEVIRA
                     VSRSCEARGVEHIFAKSFHHYPDMGGDIDLFVASRSDDVDAAALEGTPAVPAARDFRG
                     RMSGVTAYRVGGGFSLEIYHGRVGVLGEHGALISRLIRNGERTRVGEADFLVPSAEDL
                     LVLQGMQKVYRHDYIRLCDVLSTASLASRERMDWDYVIGASAQLGTLYGLRSYLTYAG
                     QVLRATLGRELLPAPLRARLTVGSCGRGKFRGGVFVFPRARVAGRIYLGKVLAAARAG
                     NWDGVSRLSLMPLVAASALTRKLAPRAAAQ"
     gene            974..1840
                     /locus_tag="VD968_18445"
     CDS             974..1840
                     /locus_tag="VD968_18445"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HYE16425.1"
                     /translation="MKRTAGWAASFGAALTGRGAAVGACIFYYHRVADVGFVDAQLDD
                     WNVRPETFERQVAALAEFAEIVPLLELPGRLRDPAPGRRPLVSLTFDDGYASFHRHAL
                     PVLKRYGAHATAFVVTGTVGRDGPQPFDRWARKNTARTRPEDWRAMTWEELEDCVTSG
                     LVTVGAHSHLHLRGSLCARAQLEEEAGRSRAVLQSRLGRTHARAYAYPYGSSRLGDAS
                     EAYAAAVRSAGYELAVTTDLGLATVASAPLLLPRVEAHALDAPGVLKAKAVGALAPYR
                     LTDNLRLLNRAL"
     gene            1837..>2673
                     /locus_tag="VD968_18450"
     CDS             1837..>2673
                     /locus_tag="VD968_18450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16426.1"
                     /translation="MKSREPILILDGQTNQALACARALGEAGHAVLVASHERFPLAGW
                     SRYCEGRYRLSRQSPEAFSGMRSWARERGVRIVLPLTERSCVLLNLERESWEESGARV
                     GCGPAEMLEAAFDKALTIRHAEACGVRVPVTRLPGSLDECLDAAREVGFPCVVKPRRS
                     NAWDGERFAPTRAPVYVKGREDLKRAVEACRQGGEWPLVQAYARGHGKGVFVLCDSGR
                     VVARFAHERLRDTRPTGSGSSLRRSVEPEARLVGPAERLLAEMRWHGPAMVEFKDEGS
                     GEP"
BASE COUNT          371 a          922 c          965 g          415 t
ORIGIN      
        1 cgcgcaggaa ctgcgtgctc gtccgcgtgg cccggcgact cgaagagatc ggcacgcgcg
       61 cacccgcatt cttcgacgag gccgccgaag aggaggggcg gcgcgcccgc gcgatgtttg
      121 aagtcattcg cgcggtaagc cgctcgtgcg aggcgcgcgg cgtcgagcac atcttcgcca
      181 agtcgttcca ccactacccc gacatgggcg gcgacattga cctgttcgtc gcttcgcgtt
      241 cggacgacgt ggacgcggcg gcactcgaag gcacgcccgc cgtacccgca gcgagggact
      301 tccggggccg catgtcgggc gtgacggcgt acagggtggg cggcggcttc tccctcgaga
      361 tttaccacgg gcgcgtgggg gtgctgggcg agcacggcgc gctgataagc aggctgatac
      421 gcaacggcga gcgtacgcgc gtaggcgagg ctgattttct cgtcccatcg gccgaagacc
      481 tccttgtgct ccaggggatg cagaaggttt acaggcacga ctacatacgc ctgtgcgacg
      541 tgctctcgac cgcctcgctc gcctcgcggg agcgcatgga ctgggattac gtcatcgggg
      601 cttcggcgca gctcggcacg ctctacgggc tgcgcagcta cctaacctac gcagggcaag
      661 tcctgcgcgc gacgctgggg cgcgagctgc tcccggcgcc cttgcgcgcg cggctgacag
      721 tcggaagctg cgggcgcgga aagttccgcg gcggcgtctt cgtcttcccg cgcgcgaggg
      781 tcgccggccg gatttacctg ggcaaggtgc tggccgcagc gcgggccggc aactgggacg
      841 gcgtcagccg cctttctctc atgccgctcg tggcggcctc ggccctgacg cggaagctcg
      901 ccccccgcgc ggcggcgcag tagtaagcct taaagttccg gtgatggtgg ggcgtaattc
      961 ggtaaagcgc gcggtgaaac gaacggccgg ttgggcggcg tccttcgggg cggcgctcac
     1021 cggccgcggc gcggccgtgg gggcctgcat tttttactac caccgcgtcg ccgacgtggg
     1081 cttcgtggac gcgcagttgg acgactggaa cgtgcggccc gagaccttcg agcggcaggt
     1141 cgctgcgctc gctgagttcg ccgagatagt ccccttgctc gaactgcccg gacgcttgcg
     1201 cgaccctgcg cccggtcgca ggccgctcgt ctcgctgaca ttcgacgacg gctacgcgag
     1261 cttccacagg cacgccctcc cggtgcttaa gcgctacggc gcgcacgcga ccgccttcgt
     1321 cgtcaccggc accgtggggc gtgacgggcc gcagcccttc gaccgctggg cgcgcaagaa
     1381 caccgcgcgg acaaggccgg aagactggcg cgcgatgaca tgggaggagc ttgaagactg
     1441 cgtcacgtct ggcctcgtca ccgtcggcgc tcactcccac ctgcacctgc gcgggagcct
     1501 ctgcgcgcgc gcgcagctcg aagaggaggc cggccggtcg cgcgcggttc tacagagccg
     1561 gctgggccgc acgcacgcgc gggcctacgc ctacccttac ggcagctcgc ggctcggcga
     1621 cgcctccgag gcttacgccg cggccgtgcg ctcggccggc tacgagttgg cagtgacgac
     1681 cgacctcggc ctggcgactg tcgcgagcgc ccccctgctc ctgccgcgcg tcgaggcgca
     1741 cgcgctcgac gcgcccggcg tgcttaaggc taaggcggtc ggcgcgctcg ccccgtaccg
     1801 tttgaccgac aacctgcgcc ttctgaatcg agccctatga aatctcgtga gccgattctg
     1861 attctcgacg ggcagacgaa ccaggcgctg gcttgcgccc gtgctctggg cgaggccggc
     1921 cacgcggtgc tcgtcgcgag ccatgagcgc ttccctcttg ccggttggtc gcgctactgc
     1981 gagggccgct accgcctgag caggcaaagc cccgaagcct tctccgggat gcgctcgtgg
     2041 gcgcgggagc ggggtgtccg catcgtgctg ccgctcacgg agcgctcgtg cgtgcttctg
     2101 aacctcgagc gcgagagttg ggaggagtcc ggcgcccgcg tcggctgcgg gccggccgag
     2161 atgctcgaag ccgccttcga caaggctcta acaatcagac acgccgaagc gtgcggcgtg
     2221 cgcgtgcctg tgacgcgcct gcccggctcg ctcgacgaat gtctcgacgc cgcccgcgag
     2281 gtcggcttcc cctgcgtcgt caagccgcgc cggagcaacg cgtgggacgg cgagcgattc
     2341 gcgccgacgc gggcacccgt ttacgttaag gggcgggagg atttgaagcg cgccgtcgaa
     2401 gcgtgcaggc agggcggcga atggccgctc gtgcaggctt acgcgcgcgg ccacggcaag
     2461 ggcgtcttcg tcctgtgcga ctcggggcgc gtggtcgccc gcttcgcgca cgaacgcctg
     2521 cgcgacacgc ggccgaccgg gtcgggcagc agcctccgcc gctcggtcga gcccgaagcg
     2581 cggctcgtcg ggccggccga gaggctgctc gcagagatgc gctggcacgg ccccgcgatg
     2641 gtcgagttca aggacgaggg ctcgggcgag cct
//
LOCUS       DASPKR010000702         3229 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1150926, whole genome shotgun sequence.
ACCESSION   DASPKR010000702 DASPKR010000000
VERSION     DASPKR010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3229)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3229
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1150926"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..733)
                     /locus_tag="VD968_18455"
     CDS             complement(<1..733)
                     /locus_tag="VD968_18455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16427.1"
                     /translation="MSNNTKQKVNPLSRRPRQQRLVMAVRGGAGTGKSWFLRSMAEAG
                     LGRLCIFDVERKTRLLPGVGNHFDGLEIEHPDELPEFIDWALSGDGREQNYGCFGLDS
                     WAAYFSAKHSETIAAVRERTGDPLAQPTAEELAADQMILQGVLRRLCMESGKSVVIVD
                     QIPAKGKEAKEDNEVGRVLPMTASGLEYFVDVMVEVSLQERDGEITRVFQVVKSNSPA
                     FEVGFELTGNVTFKDFLDVMKREHGT"
     gene            complement(924..1307)
                     /locus_tag="VD968_18460"
     CDS             complement(924..1307)
                     /locus_tag="VD968_18460"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE16428.1"
                     /translation="MADVQPEDLKVLVVEDYEDMSLAMRLALEGRGYHIIEASNGEQA
                     VELAARERPDVILMDLQLPVLDGLAATERIRAHPELSNTVIIAVTAHNEGDYRARALA
                     AGCNAFASKPIDFEWLNDLIINMAS"
     gene            complement(1477..2052)
                     /locus_tag="VD968_18465"
     CDS             complement(1477..2052)
                     /locus_tag="VD968_18465"
                     /inference="COORDINATES: protein motif:HMM:NF024183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HYE16429.1"
                     /translation="MDSRFYPGVEADVTQLMAELRRLFDEDTAFEVQTMQVSSTAILQ
                     ARKSSTLRDLTGLSAALTIRVTPEHGGTRVEIGMQKWFDKVAVAAVAVALSAGLLLAL
                     PALGAYWQHKLTEDAWKVIEAHISRKAGGYVPPMPGRCGTCGTTVVSGSAFCSGCGAN
                     LRVGRSCQSCGAEQRDSAARFCNRCGKPLTG"
     gene            complement(2132..2704)
                     /locus_tag="VD968_18470"
     CDS             complement(2132..2704)
                     /locus_tag="VD968_18470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16430.1"
                     /translation="MKKSAPAKALALLLALATFHALTAANAAAQRRDHLTPEEIELIR
                     DNQELDKRTEVFIKAAERRLLALTDSAAAAKQLEKDTEKWGVVKGTREQLLYDISKIL
                     DEAVVNIDDAHLHSPDSPLLRKSLFKLSEAAARFLPQLAPLRQSTQSEKERDILERAI
                     ESVEEIVEAAKSHNVNEGDLKAKSNAKKNN"
     gene            complement(2732..>3229)
                     /locus_tag="VD968_18475"
     CDS             complement(2732..>3229)
                     /locus_tag="VD968_18475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16431.1"
                     /translation="TPLVPPPLRHLPEEIRSRLSTAKDLKARTKLSIEIADDRLARAA
                     SHAGADRWDAATAELGIYEAVVRDAVTNLQRQSTQKNRHRDIIKRIEMALRSHLPRVE
                     TLRRGLPAPYAVHAQSTLDYVRDLRSETLNAFYDDTVIPQVPKGKPQGNERAKESTPA
                     NAAKP"
BASE COUNT          490 a          988 c         1129 g          622 t
ORIGIN      
        1 ccgtgccgtg ctcgcgcttc atcacgtcga ggaagtcctt gaaggtgacg ttgcccgtca
       61 gctcgaagcc gacctcgaag gccgggctgt tcgacttgac gacctgaaag acgcgcgtga
      121 tctcgccgtc gcgctcctgg agcgagacct cgaccatcac gtccacgaag tattcgagac
      181 cgctcgccgt catcggcagc acgcgcccga cctcgttgtc ctccttcgcc tctttcccct
      241 tcgccggaat ctggtcgacg atgacgaccg acttcccgct ctccatgcag agccggcgga
      301 gcacgccctg caagatcatc tggtcggcgg ccagctcttc ggccgtgggc tgcgcgagcg
      361 ggtcgcccgt gcgctcgcgc acggcggcga tggtctcgct gtgcttggcg ctgaagtagg
      421 cggcccacga gtcgagcccg aagcagccgt agttctgctc gcgcccgtcg ccggagagcg
      481 cccagtcaat gaactccggc agctcatccg ggtgctctat ctccaagccg tcgaaatggt
      541 tgccgacgcc gggcagcagt cgcgtcttgc gctccacgtc gaagatgcag aggcgcccca
      601 ggccggcttc ggccatcgag cgcaggaacc agctcttgcc cgtgccggcg ccgccgcgca
      661 cggccatcac gagccgttgc tgtcgggggc ggcggctcaa ggggttaact ttctgtttcg
      721 tattgttgct catctcgttt tcacctcatc agccgaaccc ggccttaaag tctcggaagg
      781 tggcttaaaa gccgacttta acgctgcgcc ctcaaacgcc tctgagagca agctttcccg
      841 aacgcccggc actatagcac gtttcgcgcg agaatggaac agtgtttcag gggtgaaacg
      901 aaaaaaattt tacgggaggg gtttcaggag gccatgttga tgatgaggtc gttgagccac
      961 tcgaagtcaa taggcttgct cgcgaaggcg ttgcagccgg cggcgagggc gcgggcgcgg
     1021 tagtcgcctt cgttgtgggc cgtgacggcg atgatgacgg tattactgag ttccgggtgg
     1081 gcgcgtatgc gctcggtggc ggcgaggccg tcgaggacgg ggagctgcaa gtccatgagg
     1141 atcacgtcgg ggcgctcgcg ggcggctaac tcgacggcct gctcgccgtt cgaggcttcg
     1201 atgatgtggt agccgcggcc ttcgagcgcg agccgcatgg cgaggctcat gtcctcgtag
     1261 tcctcgacca cgaggacttt caggtcttcg ggctgcacgt cagccataag agggaagctg
     1321 tcctttcctc aaccccgtcg ggagggcaca aaataatcgc tttggggcga caatgcaacg
     1381 ggcgggcggg cgcgcagggc catgcctgct ccgaaaaggc tctatctggg ttgaaaatcc
     1441 tggcgagccg ggggcaaaca agtctggcgc ggcgcttcag cctgtgaggg gcttgccgca
     1501 gcggttgcag aagcgggccg cagagtcgcg ctgctcggcg ccgcacgact ggcaggagcg
     1561 cccgacgcgc aggttcgcgc cgcagcccga gcagaaggca gagcccgaga cgacggtcgt
     1621 gccgcaggtg ccgcagcggc ccggcatggg cgggacgtag ccgccggcct tgcgcgagat
     1681 gtgggcctcg atgaccttcc aagcgtcctc ggtaagctta tgctgccagt atgcgccgag
     1741 cgcgggcagc gccagaagca gccccgcaga gagcgcgacg gcgacggcgg cgaccgccac
     1801 cttgtcgaac cacttctgca tgcctatctc gacgcgcgtg ccgccgtgct cgggcgtgac
     1861 ccttatggtg agcgcggcgg agaggcccgt caggtcgcgg agcgtggagg acttacgagc
     1921 ctgaaggatc gccgtcgagg agacctgcat cgtctgaact tcgaaggcgg tgtcttcgtc
     1981 gaagaggcgg cgcaactccg ccatcaactg cgtcacgtcg gcctcgacgc ccgggtagaa
     2041 tctgctgtcc atcgtctcgg ggaacttcct ttcttaacgg ccgactattc tacgacgaaa
     2101 cggccgggcg ggttcggcgg ctggctgtcg ctcagttgtt cttcttggcg ttgctcttgg
     2161 ccttgaggtc gccctcgttg acgttgtgcg acttggcggc ctcgacaatc tcctcgaccg
     2221 actcgattgc gcgctccaag atgtcgcgct ccttctcact ctgcgtgctc tggcgcaggg
     2281 gcgcgagctg cggcaggaag cgcgccgcgg cctcggagag cttgaagaga gacttgcgga
     2341 ggagcgggct gtcgggcgag tgcaggtgag cgtcgtcaat gttgacgacg gcctcgtcga
     2401 gaatcttcga gatgtcgtag aggagctgct cgcgcgtccc cttgacgacg ccccacttct
     2461 ccgtgtcctt ctcgagctgc ttggcggccg cggccgagtc cgttagcgcg agcaggcggc
     2521 gctcggcggc cttgatgaag acctccgtgc gcttgtccag ctcctggttg tcgcgtatca
     2581 gctcgatctc ttcgggcgtc aggtggtcgc ggcgctgggc ggcggcattc gccgcggtca
     2641 gagcgtggaa cgtcgcgagg gcgagcagga gtgcgagggc tttggcaggg gctgactttt
     2701 tcatggcggt ggctagtgta gttttagtcc ttcagggctt cgcggcgttg gcgggcgtgc
     2761 tctccttcgc gcgctcgttc ccctgcggct tgcctttcgg cacctgcggg atgactgtgt
     2821 cgtcgtagaa ggcgttgagg gtctcggagc ggaggtcgcg cacgtagtcg agcgtggact
     2881 gagcgtggac ggcgtagggc gccggcaggc cccgccggag cgtctcgacg cggggcaggt
     2941 gcgagcgcag cgccatctct atgcgcttga ttatgtcgcg gtggcggttc ttctgcgtgg
     3001 actgtctttg caggttggtg acggcgtccc ggactacggc ctcgtagatg ccaagttctg
     3061 cggtcgcggc gtcccagcgg tctgcgccgg cgtgagaggc cgcgcgagcg agcctgtcgt
     3121 cggcgatctc gatgctaagc ttcgtgcgcg ccttcaagtc cttcgcggtc gagaggcgcg
     3181 agcggatttc ctccggtagg tggcgaagcg gcggggggac gagcggcgt
//
LOCUS       DASPKR010000703         2151 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1536961, whole genome shotgun sequence.
ACCESSION   DASPKR010000703 DASPKR010000000
VERSION     DASPKR010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2151)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2151
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1536961"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..994)
                     /gene="rlmB"
                     /locus_tag="VD968_18480"
     CDS             complement(<1..994)
                     /gene="rlmB"
                     /locus_tag="VD968_18480"
                     /inference="COORDINATES: protein motif:HMM:TIGR00186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HYE16432.1"
                     /translation="MKRRGGNRHEGGGGGRRRTEPGSPGERVARAYDGRPPARGRDER
                     GAGPRAAAAPALYDSETGRSGVTDAAEEGSHLFGVQPVVEALRAGRRPVERITVLEGA
                     HESRLREILELARAAGVPVRRAPRAELQRLAPFATHQGVVATIAAARYVSSDDLLDAL
                     AARVGTEDPPLAVALDGVEDPRNLGAIIRTVECAGGHGVFVPERRAAGLTETVAKSAA
                     GALEYVPVARTVNTARLVEELKERGVWTVGTAADAETDYTAWDWRQPCALLLGGEGEG
                     LRRLVRERCDVLVRIPLLGRIESLNVSVAAGVVLYEAVRQRTGARGAAYKQAREV"
     gene            complement(1023..2066)
                     /locus_tag="VD968_18485"
     CDS             complement(1023..2066)
                     /locus_tag="VD968_18485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16433.1"
                     /translation="MALGVDDDLPMTGSAAGESLRRFSADELVACVACARPNGPTRMN
                     CLYCGAPLPAEGRVAALRRPVLRKLEEWERGFNVVLVPAGAGRVSAEAAAEAESLLRL
                     EPGRLSECVESGRPLPLARAASPEEATLIRERLTMLGFEAETVPDEALATHDPPVRVR
                     ALELTGDALVCPAGADQREVRWDDLALFVTGRVTRKRVELEERRGVVKGKDRVVNARE
                     VVASDDSVLDIYTRVEAEGAGWRVAANNFDYSCLGARKGLLARDNFRTLLGALRDAAP
                     SAAFDDAYGRVRHLLSAVWPLAERTESAGLKRQGLGRFNTEAATVVSNEEQFTRYSRL
                     CRHFALRGSGDVV"
BASE COUNT          316 a          835 c          705 g          295 t
ORIGIN      
        1 cgacttcccg cgcctgctta tacgcggccc cgcgcgcccc ggttctctgc cgcacggcct
       61 cgtagagcac tacgcccgcc gcgaccgaga cgttgagcga ctcaatccgg ccgagcagcg
      121 gtatccgaac gagcacgtcg caccgctcgc gcacgagccg ccgcaggccc tcgccctcgc
      181 cgccgagcag cagcgcgcag ggctgccgcc agtcccacgc ggtgtagtcc gtctcggcgt
      241 cagccgcggt gccgaccgtc cagacgccgc gctctttaag ctcttcgacg agccgcgccg
      301 tgttgaccgt gcgcgccacg gggacatatt cgagcgcgcc cgcggccgac ttcgccaccg
      361 tctcagtcaa cccggcggcg cgacgctcgg ggacgaagac gccgtggccg cccgcgcact
      421 cgaccgtgcg gattatcgcg ccgaggttgc gcgggtcttc gacaccgtcg agcgcgacgg
      481 ccagcggcgg gtcttcggtg cctacgcgcg cggcgagcgc gtcgagcaga tcgtccgacg
      541 agacgtagcg cgccgccgct atcgtcgcga cgacgccctg gtgggtcgcg aacggggcga
      601 ggcgctgcaa ttcagcgcgc ggcgcgcgcc ggacggggac gcctgccgcg cgcgccagct
      661 ccaaaatctc gcgcagccgc gactcgtgcg cgccttccag caccgttatg cgctctacgg
      721 ggcggcggcc ggcgcgcagg gcctcgacca cgggctgcac gccgaacagg tgtgagcctt
      781 cctcggccgc atcagtcacg cccgagcgcc ccgtctcgga atcgtagagt gcgggcgccg
      841 ccgcggcgcg aggccctgcc ccgcgctcgt ctcggccgcg cgcgggcggg cggccgtcat
      901 acgcgcgcgc gaccctctcg cccggcgagc cgggctccgt gcggcgccgg cctccgccgc
      961 cgccctcgtg cctgttgccg ccccgacgct tcataacatc ccgctcacga aattcttcat
     1021 ccctaaacta cgtcgccgct gccccgcagc gcgaagtggc ggcaaagccg cgagtagcgc
     1081 gtgaactgct cctcgttgct gactacggtc gcggcctccg tgttgaagcg cccgaggccc
     1141 tgacgcttca ggcccgccga ctccgtccgc tccgcgagcg gccacacggc cgaaagcaga
     1201 tgacgaacgc gcccgtatgc gtcgtcgaac gcggccgaag gcgccgcgtc gcggagcgcg
     1261 ccgaggagcg ttcggaagtt gtccctcgcg agcagcccct tgcgtgcgcc gaggcaggag
     1321 tagtcgaagt tgttcgccgc gacgcgccag cccgcgcctt cggcttcgac gcgcgtgtag
     1381 atgtcgagca ccgagtcgtc cgatgcgacg acctcgcgcg cattaacgac tcggtctttg
     1441 cccttcacaa cgccgcgcct ctcttcgagc tcgacgcgct tccgcgtgac gcgccccgtg
     1501 acgaagagcg caaggtcatc ccagcgcacc tcgcgttgat ccgcgccggc cgggcagacg
     1561 agcgcgtcgc ccgtcaactc aagagcgcgc acgcgcacgg gcggatcgtg cgtggcgaga
     1621 gcttcgtcgg ggacggtctc cgcctcgaag ccgagcatcg tgagccgctc ccggatcagc
     1681 gtcgcctcct ccggagaggc cgcgcgcgcg agcggcagcg gccggcccga ctccacgcac
     1741 tcagacaggc gaccgggctc caacctcagg agcgactcgg cctcggccgc cgcttcagcg
     1801 gagacgcgcc ccgcgcccgc cggcacgagc acgacgttaa agccgcgctc ccactcttcg
     1861 agcttcctca gcacgggcct tcggagcgcc gcgacgcgcc cctcggccgg gagcggcgcg
     1921 ccgcagtaca gacagttcat gcgcgtcggg ccgttcgggc gggcgcaggc cacgcaggcg
     1981 accaactcgt cggccgagaa tcgcctgagc gactcgcccg cggccgagcc cgtcatcggg
     2041 agatcgtcgt caacccccaa agccattccc cttcgagaga cctctagaga cacgcaagac
     2101 gttcttgagt ataatccctc ccgccctttc caccgacact aaatttaaag a
//
LOCUS       DASPKR010000704         5017 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_752864, whole genome shotgun sequence.
ACCESSION   DASPKR010000704 DASPKR010000000
VERSION     DASPKR010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5017)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5017
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_752864"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1453
                     /locus_tag="VD968_18490"
     CDS             <1..1453
                     /locus_tag="VD968_18490"
                     /inference="COORDINATES: protein motif:HMM:NF019229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CRTAC1 family protein"
                     /protein_id="HYE16434.1"
                     /translation="NNQDGTFRDVTREAGLAQVIYGIGCAVGDYDNDGFADIFITAVG
                     PDQLFRNLGNGKFQNVTQRAGVGDPGFGTSAAWLDYDRDGRLDLFVANYVEWSPETDV
                     HCTLDGTTKSYCTPQKYKGQSPTLYRNRGDGRFDNVTARAGLQDPAGKALGIALLDYN
                     DDGLLDIFLAVDTEPNKLYKNNGNGTFTDEALTAGVAFGETGAARAGMGVDAADYDGS
                     GRQSLIIGNFTSERMALYRNEGNGLFTDEAQASGIGKMSEQSLTFATFFFDYDLDGLL
                     DIFAVNGHVSDDIQKVQPRVRYAQPPHLFRNLGRRKFEEVTARVGRTLGRAVVGRGAA
                     YGDYDNDGDLDLIVTVNNGPARLYRNDNANQNDVLRVKLVGGPSNRDAVGARVAVRGA
                     NNFKAWNMVRTGSSYASQSELPVVLGLGRPDGTDRSFTLDITWPSGGRMTLQQVKPNQ
                     SLVIQEGQGIAKSEPIVFARPAPTPTPAAPPAQ"
     gene            1460..4942
                     /locus_tag="VD968_18495"
     CDS             1460..4942
                     /locus_tag="VD968_18495"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HYE16435.1"
                     /translation="MNKRPYSAAAFVITVALALISAFAPRGAFRTAAQGGKSGAQSRE
                     EAYRANNLGVALLEQFKHREGAEQFRRALSIDPKLTLARINLSIALLNVPDFAGALKE
                     AQAAAAAAPNAPQPHYVLGMVARQQGRVEDAVASFQRVLKIDPLDVGANVQLGQLYAQ
                     QRMYAEAVAAFRAAVAEEPYNGTALYNLGTALLRMGRREEGQRIVQQFQALRQSGAAT
                     IIGQNYMEQGRYAEAVTSTGAEPDLVDKATPEVSFVEATEALTPPAGTVAGATLSPYV
                     GGAVTLFDFDSDGDPDIFGAFSTERKLYRNDGGKFADVTAQSGLAAKSGAWASAAVAG
                     DFDNDEKPDLLVAGAGALALYRNAGGGRFDDATSAARLPAYTHLSGAAAFVDVDHDGD
                     LDIFVGGSRAASATTAKATATPNLLLRNNGDGTFADVTSAAKLSPDSGAVVAVVPTDY
                     DNRRDVDLLVAAGDGSVALWKNLRDGTFREVAAEVGLPAKGAPLGAVAAGDVNKDGFT
                     DFYFGREGGVGDLALSDGRGRFKIAAAPSGGAKPVAAQFLDYDNDGLLDILTVEGGAG
                     TLRVLRNTGQAWADVSEKAAGKVRLSGWLASGDLDGDGDVDLVSVPAAKGEMGRAVVA
                     RNEGGNRNASLRVRVAGKVSNRGGVGAKIEMRAGSLQQKLETYSASPAPAPSDVIFGL
                     GRRESADAVRILWPSGVVQAETEFPASQGAAKSLARTLPVVELDRKPSSCPYLYVWNG
                     ERFEFVTDFMGGGELGYWAAPGVRAAPDPDEYVRIRGDQLRERGGRYELRVTNELEEA
                     LFVDRLQLVSVAHPAGVEVFPNEGLGNPTSSAFRLYATRDARPPLAASDDHGHDVLPL
                     VSRLDRKYPDDFALKTVRGYAEPHSLTLDLGGTGAGTGQPVLLLTGWTDYAFSSDNVA
                     AAQQGMTLSPPALQVRDGAGRWRTVVENIGIPVGRPQTVTVDLTGKFLSSSREVRILT
                     NMRIYWDQILVGTSEARAALRVERLEASSAELRWRGFSAEVTPDGREPYGYDYARVSQ
                     TSPWKVMPGSYTRFGDVRELLTATDDMFVVSRPGDELALSFDAAPLAPLPKGWARTFL
                     LYADGFSKEMDINSASPHEVAPMPFHGMREYPYTSPAAYPSTPAHRAYVERYNTRLVT
                     APPQGVASAVVLHH"
BASE COUNT          842 a         1766 c         1675 g          734 t
ORIGIN      
        1 caacaaccag gacggcacct tccgcgacgt gacgcgcgag gcggggctcg cccaggtcat
       61 ctacggcatc ggctgcgccg tcggcgacta cgacaacgac ggcttcgccg acatcttcat
      121 cacggccgtc ggccccgacc aactcttccg caacctcggc aacggcaagt tccagaacgt
      181 gacgcagcgc gcgggcgtcg gcgaccccgg cttcggcacc agcgccgcgt ggctcgacta
      241 cgaccgcgac ggccgcctcg acctcttcgt cgccaactac gtcgagtggt cgcccgagac
      301 ggacgttcac tgcacgctag acggcacgac caagtcgtat tgcacgccgc agaagtacaa
      361 gggccagtcg ccgaccctct accgcaaccg cggcgacggc cgcttcgaca acgtgacggc
      421 gcgcgccggc ctgcaagacc ccgcgggcaa ggccctcggc atcgcgctcc ttgattacaa
      481 cgacgacggc ctgctcgaca tcttcctcgc cgtggacacc gagccgaaca agctctacaa
      541 gaacaacggc aacggcacct tcacggacga ggcgctgacc gcgggcgtcg ccttcggcga
      601 gacgggcgcc gcccgcgcag ggatgggcgt tgacgcggcc gactacgacg gctccggccg
      661 ccagagcctg atcatcggca acttcacgag cgagcgcatg gcgctctacc gcaacgaggg
      721 caacggcctc ttcaccgacg aggcgcaggc ttccggcatc ggcaagatgt cggagcagtc
      781 actgactttc gccaccttct tcttcgacta cgacctcgac ggcctcctag acatcttcgc
      841 cgtcaacggc cacgtctccg acgacataca gaaagtccag ccgcgagtgc gctacgcgca
      901 gccgccgcac ctcttccgaa acctcggccg tcgcaagttc gaggaggtaa ccgcgcgcgt
      961 cggccgcacg ctcggccgcg ccgtcgtcgg ccgcggcgcc gcctacggcg actacgacaa
     1021 cgacggcgac ctggacttga tcgtcacggt gaacaacggc ccggcgcggc tctaccgcaa
     1081 cgacaacgcg aaccagaacg acgtgctgag ggtaaagctg gtgggcggcc cctcgaaccg
     1141 cgacgccgtc ggagcgcgcg tcgccgttag gggcgcgaac aacttcaagg cctggaacat
     1201 ggttcggacg gggtcgagct acgcgtcgca gtcggagctg cccgtagtcc tcggcctcgg
     1261 caggccggac ggcaccgacc gcagcttcac gctcgacatc acgtggccga gcggcggcag
     1321 gatgacgctt cagcaggtga agcccaacca gtcgctcgtc atacaggaag ggcagggcat
     1381 agccaaatcc gagcccatcg tcttcgcgcg ccccgcgccg actccgacgc ccgcggcccc
     1441 gcccgcccag tgagcttgta tgaataaacg cccgtacagc gccgccgcct tcgtcataac
     1501 agtagcgctg gctctgatct cggccttcgc gccgcgcggc gccttcagga cggctgcgca
     1561 gggagggaag tcgggcgcgc aatcgcgcga ggaggcttac cgcgcgaaca acctcggcgt
     1621 cgccctgctc gaacagttca agcacaggga gggggcagag cagttccgcc gcgcgctctc
     1681 gattgacccg aagctcacgc tcgcccgcat caacttgagc atcgcgctac tgaacgtgcc
     1741 ggactttgcc ggcgcgctca aggaagcgca ggcggcggcc gctgccgcgc cgaacgcgcc
     1801 gcagccgcac tacgtcctcg gcatggtcgc gcgccagcag gggcgcgtcg aggacgccgt
     1861 cgcctcgttc cagcgcgtgc tcaagattga cccgctcgac gttggtgcga acgtacagct
     1921 cggccaactc tacgcgcagc agcgaatgta cgccgaggcc gtcgcggcat tccgcgccgc
     1981 cgtcgccgag gagccctaca acggcacggc gctctacaac ctcggcacgg cgctgctgcg
     2041 catgggccgg cgcgaggagg ggcagcgcat cgtccagcag ttccaggcgc tgcgccagag
     2101 cggcgccgcg accatcatcg gccagaacta catggagcag ggccgctacg ccgaggccgt
     2161 aacctcgacg ggcgccgagc ccgacctggt tgacaaggcg actcccgaag tcagtttcgt
     2221 cgaagcgacc gaggccctta cgcctccggc gggcacggtg gcgggcgcga ctttgagccc
     2281 ttacgtcggc ggcgccgtta cgctcttcga cttcgactcg gacggcgacc cggacatctt
     2341 cggcgcgttc tcgacggagc ggaagctcta ccgcaacgac ggcggaaagt tcgccgacgt
     2401 gaccgcacaa tccggcctcg cggccaagtc gggcgcgtgg gcttcggcgg ccgtggcggg
     2461 cgatttcgac aacgacgaga agcccgatct gctcgtcgcg ggcgcgggcg cgctcgcgct
     2521 ctaccggaac gcgggcggcg gccgcttcga cgacgcgacc tcggcggcgc ggctccccgc
     2581 gtacacgcac ctctcgggcg ccgccgcctt cgttgacgtt gaccacgacg gcgacctgga
     2641 catcttcgtc ggcggctcgc gggccgcgag cgcgacgacg gcgaaggcta ccgccacccc
     2701 aaacctcttg ctgcgcaaca acggcgacgg caccttcgcg gacgtgacct cagcggcgaa
     2761 gctatctcca gacagcggtg ccgtcgtcgc ggtcgtcccg acagactacg acaaccggcg
     2821 cgacgttgac ctgctcgtag ccgcgggcga tggctcggtc gccctctgga aaaacctgcg
     2881 tgacgggacg ttccgcgagg ttgctgccga ggtcggcctc cccgcgaagg gcgcgcccct
     2941 cggcgcggtc gccgctggcg acgtgaacaa ggacggcttt acggacttct actttggtcg
     3001 tgagggcggc gtcggcgatc tcgcgctgag cgacggcagg gggcgtttta agatagcggc
     3061 ggcgccgtcg ggcggggcca agcctgtggc ggcgcagttc ctcgactacg acaacgacgg
     3121 gctgctcgat atccttacgg tcgaaggcgg tgcaggcaca ttgcgcgtgc tgcgcaacac
     3181 gggccaagcc tgggccgacg tgagcgagaa ggccgcgggg aaggtgaggc tttcgggctg
     3241 gctcgcgtcc ggcgacctcg acggcgacgg cgacgttgac ttggtctcag tgcctgccgc
     3301 gaaaggcgag atggggcgcg cggtagtcgc gcgcaacgag ggagggaatc gcaacgcttc
     3361 tttgcgcgtg cgcgtcgcgg ggaaggtgag taaccgcggc ggcgtcggcg ctaagatcga
     3421 gatgcgagcc gggagcctgc aacagaagct cgagacttac tcggcgagcc cagcgcccgc
     3481 gccgtcggac gttatattcg gtctgggccg gcgcgagtcg gcagacgccg tgaggatcct
     3541 ttggccttcg ggtgttgtgc aggccgagac cgagttcccg gcgtcacagg gcgcggcgaa
     3601 gtcgttggcg cggacgctgc ctgtcgtcga gctcgaccgc aagccctcgt cctgcccgta
     3661 cctctacgtg tggaacggcg agcgcttcga gtttgtgact gacttcatgg ggggcggcga
     3721 gctgggctac tgggccgcgc cgggcgtgcg cgccgcgccc gacccggacg agtacgtgcg
     3781 aatacgcggc gaccaactgc gcgagcgcgg cggccgctac gagcttcgag tgacgaacga
     3841 gctggaagag gccctcttcg ttgaccgctt gcaactcgtc tcggtcgcgc accccgcggg
     3901 cgtcgaagtc ttccccaacg agggcctggg caacccgacc tcctcggcct tcaggctcta
     3961 cgcgacgcgc gacgcgcgcc cgcccctcgc agcctccgac gaccacggcc acgacgtgct
     4021 cccgctcgtc tcgcgcctcg acaggaaata ccctgacgac ttcgcgctga aaactgttcg
     4081 cggttacgcc gagccgcact cgctcactct cgacctgggc ggcacgggcg cgggaaccgg
     4141 ccagcccgta cttcttttga cgggctggac tgactacgca ttttcgagcg acaacgtggc
     4201 cgcggcgcag caggggatga cgctctcgcc cccggcgctt caggtgaggg acggcgcggg
     4261 ccgatggcgg actgtcgtcg agaatatagg gattcccgta ggccgccctc agactgtgac
     4321 ggtggacctg actgggaagt tcctatcgtc gagccgagag gtacgcatcc tcacgaacat
     4381 gcgcatctac tgggatcaga ttctggtggg gacttcggag gcgcgcgccg cgctgcgagt
     4441 cgaacggcta gaagcctcat cggccgaact gcgctggcgc ggcttctcgg ccgaggtgac
     4501 gcccgacggg cgcgagccgt atgggtacga ctacgcgcgc gtgagccaga cttcgccgtg
     4561 gaaggtgatg cccggctcct acacgcgctt cggcgacgtg cgcgagctgc tcacggccac
     4621 cgacgacatg ttcgtagtct cccggcccgg cgacgagctc gcgctctcgt tcgacgccgc
     4681 gccgctcgcg cccctcccca aaggctgggc gcgcacgttc ctgctctacg ccgacggctt
     4741 cagcaaggag atggacatca actccgcgag cccgcacgag gtcgcgccca tgcctttcca
     4801 cggcatgagg gagtacccgt acacgagccc ggcggcctac ccctcgacgc ccgcgcaccg
     4861 cgcctacgtc gagcgctaca acactcgact ggtcacggcg ccgccgcagg gcgtcgcatc
     4921 agccgtagtt ctccatcact aacaggatga cgagcacggc cacagcgatg ccgaggccga
     4981 ttgcgacctt cgcgcctgtg gagaggttgt tgccgcc
//
LOCUS       DASPKR010000705        12340 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_504040, whole genome shotgun sequence.
ACCESSION   DASPKR010000705 DASPKR010000000
VERSION     DASPKR010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12340)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12340
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504040"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..311)
                     /locus_tag="VD968_18500"
     CDS             complement(<1..311)
                     /locus_tag="VD968_18500"
                     /inference="COORDINATES: protein motif:HMM:NF039315.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HYE16436.1"
                     /translation="MEAKLSGGGGGAWPALPLAEWRETCVTLHMMTQIVGKVRLAQAP
                     HINHWWQVPLYVKPRGLTTNSMPHGTAAFQIDFDFVAHRLVIQTSDGGERVIKLEPRA
                     VA"
     gene            complement(329..754)
                     /locus_tag="VD968_18505"
     CDS             complement(329..754)
                     /locus_tag="VD968_18505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16437.1"
                     /translation="MTTYPPAPGFADVRVRTSDGEAEVENVGDADTCADSGVPPVNPC
                     TVVVQPTTLETPPAQPNGGGYNSSLAAGTVVTTPVLPGESINVEFLLGVQTTGLFRFY
                     VNIEASFDEAVPVLPSRGAKAARPRTGKPKLSKRPRTEK"
     gene            complement(887..2257)
                     /locus_tag="VD968_18510"
     CDS             complement(887..2257)
                     /locus_tag="VD968_18510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HYE16438.1"
                     /translation="MRKFCLTLAAVAAVCVLSEAAQAAANFVYHEQSSEYVAQPVGTI
                     NPSTFTCEVSTDPVDEAGGRYVDTPDLSPSSPAPFGAYHIYSGAYTLRFKIEFQFFTN
                     QVRVFYTTDGTNPTTATTVSGGVTDVNPTGTTQEVVASYTYTYSDLSQNCQIVDIATA
                     TIPAQPAGTTVKYVVVAWHSAGGNVIYANSGDCPSCFACTSASCANVFEYTTIAPPPP
                     LIISEFRLRGPGGTEDEFVEIYNNSDSDVTVSSFDGSGGFGLAASDGTVRFTIPDTTT
                     IPAREHYLGVNSDGYTLSAYPAGLLTTAEGDREYTADIGDNAGIALFYTSNPTNFSAD
                     VRMDAVGSSAELNSLYKEGTGYPALSTNQTLYNSPHNTSLYRSLCSFVQGTGCTTPGV
                     PKDSGDNESDFLLVDTDPAGPYCTPTANFACERLGAPGPENSSSPIQRNSTVSLLPLD
                     RSKAPS"
     gene            2546..4009
                     /locus_tag="VD968_18515"
     CDS             2546..4009
                     /locus_tag="VD968_18515"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: protein motif:HMM:NF006673.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HYE16439.1"
                     /translation="MAGKTPITVAHGDGIGPEIMEATLHIIREAGAELDIETIEIGER
                     VYLAGNPAGIEPGAFDSLRRTKVFLKAPITTPQGGGYKSLNVTVRKTFGLYANVRPCV
                     SYHPFVETKHPKMDVVIVRENEEDVYGGIEYRQTGQVTQCLKLISRPGTEKIVRYAFE
                     YARANNRRKVTCFTKDNIMKITDGLFHRVFDEIAAEYADIENEHWIVDIGSAKLADTP
                     EAFDVVVLPNLYGDVLSDVAAQIAGSVGLAGSANIGDSIAMFEAIHGSAPRRAGQNLA
                     NPSGLFLGAVMMLVHIGQTEAAERAHNAWLRTMEDGVHTYDVYSEGVSKEKVGTREFA
                     QAVVARLGQKPERLKAVSYKSGAAAGTSFASRMAREAAASNKQTVGVDVYLEWSGGSA
                     EDLGGAVSKLSGDGLRLTSISNRGVKVWPGGHTETFCSDHWRYRFTSAESEGGREVGH
                     RQIASLLSRFADAGLDFIKTENLCDFDGKPGYSHAQE"
     gene            4029..4562
                     /locus_tag="VD968_18520"
     CDS             4029..4562
                     /locus_tag="VD968_18520"
                     /inference="COORDINATES: protein motif:HMM:NF016840.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HYE16440.1"
                     /translation="MSASSASSAERPGAGEHAPYYERYVSLVPDGDVVATLGRQFAET
                     RALLEGISEEKAGSRYAEGKWSIKELVGHLIDAERVFAYRALRFSRGDTTPLPGFEQD
                     DYVRAADFDSRTLRSLALEFEHVRASTILMLQGLGAEAWGRRGTASDSEVSVRALAYI
                     IAGHELHHVRILRERYL"
     gene            4574..5092
                     /gene="purE"
                     /locus_tag="VD968_18525"
     CDS             4574..5092
                     /gene="purE"
                     /locus_tag="VD968_18525"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HYE16441.1"
                     /translation="MSEGGREEGAEARPLVAVIMGSTSDWETMRHAAEVLKSFGVEHE
                     CRVVSAHRTPEWMAEFARGAEGRGLEVVIAGAGGAAHLPGMVAAQTLLPVLGVPVRSR
                     ALQGVDSLLSIVQMPAGVPVGTLAIGEAGATNAALLAVAILSTTRPDLREKLRRFRRE
                     QTEKVRESTLPV"
     gene            5089..6222
                     /locus_tag="VD968_18530"
     CDS             5089..6222
                     /locus_tag="VD968_18530"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: protein motif:HMM:NF004675.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HYE16442.1"
                     /translation="MSAVLPGATIGVLGSGQLGRMFAIAARRMGYRVHTFSPDSDTPT
                     GQVADKEYEHAYDDLDAVREFARGVSVVTFEFENVPAESVEAAESLAPVRPSGSVLYT
                     TQNRLREKNFLARWGFPITAFRHVTSAEGLRAALAEVGCPAVLKTAGFGYDGKGQSRI
                     NSESDVAPALAALGGREAVLEAFVDFEREVSVVAARGAGGEFRHYGVIENTHRRHILD
                     LSVAPAGVTERVAREAVEIARSVLEALDVVGVMCVEFFLTRDGRLLINELAPRPHNSG
                     HFTFDACLTSQFEQQLRAVCGLPLGSTELLKPAAMANLLGDLWHAGEPDWRAALTFPS
                     VKLHIYGKTEARRGRKMGHLTALASTPAEAARTVLAARAALTR"
     gene            complement(6313..9303)
                     /locus_tag="VD968_18535"
     CDS             complement(6313..9303)
                     /locus_tag="VD968_18535"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE16443.1"
                     /translation="MNPERWKKVDRVLQSVLEQPADRRAAYLEEACAGDAALRGEVES
                     LIASYERSEDDSLISSRAMRVAAPLLEAGRARLEEGREVGHYVVLRQLGAGGMGEIYL
                     ARDTRLERNVALKVLPAGLASDRQRMQRFEQEAKAVSALNHPNILTIYEVGEADGANF
                     IATEFIDGETLRRHLSGRRVKLHEVLDLAIQIAAALDAAHEAGVVHRDVKPENVMVRR
                     RDGYVKVLDFGLAKLAERATDPEAATRPFVQTEPGLVLGTVAYMSPEQTRGRATDART
                     DIWSLGVVLYEMVAGRLPFEGADIHRQVIAIQDEEPPPLSTRAEGVPEELQRIVSKAL
                     AKEAGERYQTAKDLLIDLRNLKRRLELDAEIERSVSPSSGGSTADGARAGTAEGAAAR
                     TALVEGAHTVSSAAYVAGVIKRHKRGTAVALGVLALAAAGIAVGLKYFGYLRAKSSEP
                     FGKIKMTRLTTTGKANFPGISPDGKYLVYVTGERAQESVRLMHIPTGSDKEIVPPAGV
                     LLCCSFFSADGNYIYYAKTGTNVPSIVYKMPVLGGATQVIGEDLDTPPTFSPDGKRMA
                     FLRGYPTEGVTALMIANADGTGEQRLMTYITTWVTYIGGPAWSPDGEVILMGIRGVDA
                     NGLYRQMVTVRVKDGTVTQINSQRWSSLGQFAWLRDGSGFIFTGSDQPSEFPMQIWYA
                     SYPGGETRRITNDVYDYRWVRMTADSQAFVTTSFERLSSLWVAPGADAARAARITTNK
                     YDGLDGVAFAPDGRVVYTSSSSSAGGNPNIWIANADGTGQKQLTADASSNIRPTVSPD
                     GRYVVFVSDRAGAQNIWRIDIDGRNPTRLTNGQRDLSPHCSPDGRWVFYTSTTSGKQR
                     VTRVPIEGGDSVPLTDYTSSDPAVSPDGKQIACGYFDEKLTRWKVVIIPAEGGPPVKT
                     FDVNVWPMKLRWAPDGRALNYIQRRAGVSNLWSQPTDGGKPTQLTDFKSDEIGYFDWS
                     RDGRLLVLSRNNVNNDVVLVSDLK"
     gene            complement(9342..9974)
                     /locus_tag="VD968_18540"
     CDS             complement(9342..9974)
                     /locus_tag="VD968_18540"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type sigma factor"
                     /protein_id="HYE16444.1"
                     /translation="MDDDAPHEVTRLLAAWSHGDKAALDRLAPLVYDELRRLARRRMR
                     REQPGHTLQTTALVNEAYIKLAGQRGMEWESRKHFFAVAARVMRQILIDHARSRRRRK
                     RGGGGRAVQPDDAGAMTLEHAADLLWQGAPVMTPERAADLLALDSALADLETHDPEKG
                     RVVELHHFLGLTFDEVADVLGISSRTAKRHWESAKAWLYHAVSKGDTTEA"
     gene            10174..>12340
                     /locus_tag="VD968_18545"
     CDS             10174..>12340
                     /locus_tag="VD968_18545"
                     /inference="COORDINATES: protein motif:HMM:NF013508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16445.1"
                     /translation="MMQRILSITFCVLMAGNHFAAGGRPPAPNGGDGHAAVRTDRAGL
                     SWPEAPAGLRAAFERARYRAGSGAGGVTVSEAEDGGAPPAAAFVPLVEQQRLQASDAA
                     VNDQFGYSVALSGDTAVVGARFDDHPGKTDAGSAYVFVRSGGVWTEQAKLQASDADAH
                     DFFGHSVALEGDTAIVGAYADDTGKTDAGSAYVFTRSGTTWTQQQRLQARDADASDLF
                     GVSVSMSGDMAIIGAYWDENSGIFAAGSAYVFTRSGGVWAEQQKLQAGDPSASDQFGW
                     SVEVDGDTAMVGATQDDNGSMLSVGSVYVFTRSGGAWTQQQKLQASEPGYGDSFGVSI
                     SLSGGTAFIGAYDDDNSSANAGSAYVFARSGGVWTEQQRLQAGDAGPNRFFGWSVALE
                     GDTAAVGALDNAYIFTLAGATWAEQQKLPATGDLVSVALDGRSLIAGAYRHTNSGGTW
                     AGSAYVFSRPATDMEINSRDSADPVPVGGSFTYTLRVYNRGPREAHNVTVTDSIPSGL
                     TASGVSLHGASDYTGAGCSVDPLANRVNCQLGTMRVFDNTFDGVVKKGKAVVMVTVTA
                     EQPGQYTNEATVNASELDPDTSNNTGRQTTTALGISSVEVTPDAVPGGAACLKPSVKV
                     MLSGATPYDTFVELSDDLAATANIPDSSSPLRLRVPAGQSSATVEVETLEVTSAQAGR
                     VTAAYGTSGGAAPLTVRPIGVKSVSVSPSSVVGGGQSAVA"
BASE COUNT         1989 a         4112 c         4204 g         2035 t
ORIGIN      
        1 gcgacggcgc ggggctcaag tttaatgacg cgctcgccgc catcgctcgt ctggatgact
       61 aggcggtgcg cgacgaagtc gaagtcaatc tggaaggcgg cggtgccgtg cggcatcgag
      121 ttggtggtaa gtccccgcgg cttgacgtag aggggaacct gccaccagtg gtttatgtgc
      181 ggcgcctgcg cgagcctgac cttgcccacg atctgcgtca tcatgtgcag ggtgacgcac
      241 gtctcgcgcc actccgcgag cgggagcgcg ggccaagccc cgccgccccc gccgcttaac
      301 ttcgcctcca tctctctctg cctccctctt acttctccgt gcggggccgc ttcgagagct
      361 tcggcttgcc ggtgcgcggg cgcgctgcct tcgcgccccg cgaaggcagc accggcacag
      421 cctcgtcgaa cgacgcctcg atgttgacgt agaagcggaa cagtcctgtc gtctgcacgc
      481 cgagcaggaa ctcgacgttg atgctttcgc cgggcagtac cggcgtcgtg acgaccgtgc
      541 cggccgcgag cgaggagttg tagccgccgc cgttcggctg ggcgggcggc gtctcaagag
      601 tcgtcggctg cacgacgacc gtgcaggggt tgacgggcgg cacgcccgag tcggcgcacg
      661 tgtctgcgtc gcccacgttc tcgacctccg cctcgccgtc ggaggttcgc accctcacgt
      721 ccgcgaagcc gggcgccggc gggtaggttg tcacctctac gacgcggaag cgcagcgtcg
      781 ttatcgtctg cgcggtgttg ttgacgacgc ggcggcgaac cgagatcgtg ccttcggtcg
      841 agttgttcgt cgggtcggag tcgaagtcac ggaagcggtt cggcgactac gagggcgcct
      901 tcgagcggtc gagcggcagg agcgagacgg tcgagttgcg ctggatgggc gagctcgaat
      961 tctcggggcc gggggcgccg aggcgctcgc acgcgaagtt cgccgtcggc gtgcagtacg
     1021 gccccgccgg gtctgtgtca accagaagga agtcagactc gttgtcgccc gagtccttcg
     1081 gcacgcccgg cgtggtgcag cccgtcccct gcacgaacga gcagagcgag cggtacaggc
     1141 tcgtgttgtg aggcgagttg tagagcgtct ggttggtcga gagcgctggg tagcccgtcc
     1201 cctctttgta gagcgagttc aactccgccg aagagccgac ggcgtccatg cggacgtcgg
     1261 cgctgaagtt cgtcgggtta gaggtgtaga agagcgcgat gccggcgttg tcgcctatgt
     1321 cggcggtgta ctcccggtcg ccttcggcgg tcgtaagcag cccggccggg taggccgaga
     1381 gcgtgtaacc gtccgagttg acgcccagat agtgctcccg cgccgggatg gtggtcgtgt
     1441 cggggatggt gaagcgcacg gtgccgtcgg aggcggcgag gccgaagccg cccgagccgt
     1501 cgaaggagct gacggtaacg tccgagtcgc tgttgttgta aatctcgacg aactcgtcct
     1561 cggtgccgcc ggggccgcgc aggcggaact ctgagatgat gagcggcggc ggcggcgcga
     1621 tggtcgtgta ctcgaagacg ttggcgcagc tcgcgctcgt gcaggcgaag cacgaagggc
     1681 agtcgccgct gttggcgtag atgacgttgc cgccggccga gtgccacgcg acgaccacgt
     1741 acttgacggt cgtcccggcc ggctgcgcgg ggatggtggc ggttgcgatg tccactatct
     1801 ggcagttctg cgacaggtct gagtaggtgt aggtgtagct cgccacgacc tcctgcgtcg
     1861 tccccgtggg gttaacgtcg gtgacgccgc ccgagacggt cgtcgcggtc gtagggttcg
     1921 tcccgtctgt cgtgtagaag acgcgcacct ggttcgtgaa gaactgaaac tcgatcttga
     1981 agcggagcgt gtacgccccc gagtagatgt ggtaggcgcc gaagggcgcg gggctcgaag
     2041 ggctcaaatc tggcgtgtcc acgtaacggc cgcccgcctc gtccacgggg tctgtgctca
     2101 cctcgcacgt gaaggtggat gggttaatcg tgccgacggg ctgcgccacg tactcgctcg
     2161 actgctcgtg gtagacgaag ttggccgcgg cttgcgccgc ctccgagagc acgcacaccg
     2221 ccgccacggc ggccagggtc agacagaact tccgcattct gtgtctccta gaagattcac
     2281 gtagtggttg tagtcaaagg gcgccgggcc ttaagaacac gggcgggcgg cccggcggcc
     2341 cgtcgtagga ttgcgccgaa actgtaacgc cccgcccggc ggcgagtcaa cgaacttctc
     2401 cgcgccggcc ggggcgcgtt gccatttccg cgcgcgggat gatatacctg caagccatcc
     2461 cggccgcggc ttttcctggc gcccgcggcg cgctaactat caggtcattc ttaaattctt
     2521 caggcggaaa ggtgcaccgg tcatcatggc tggcaaaact cccatcacgg tcgcgcacgg
     2581 cgacggcatc ggccccgaga taatggaggc cacgctgcac atcatccggg aggcgggcgc
     2641 cgagctcgac atcgagacaa tagagatagg cgagcgcgtc tatctcgcag gcaacccggc
     2701 cgggatagag ccgggcgcgt tcgactccct ccgccgcacg aaggtcttcc tgaaggcccc
     2761 gataacgacg ccgcagggcg gaggctacaa gagcctgaac gtcaccgtca gaaagacctt
     2821 cggcctgtac gccaacgtcc gcccgtgcgt ctcctaccac ccgttcgtag agacgaagca
     2881 cccgaagatg gacgtggtca tcgtccgcga gaacgaggag gacgtgtacg gcggcataga
     2941 gtacaggcag acggggcagg taacccaatg tctcaagctc atctcgcgcc ccggcacaga
     3001 gaagatcgtg cgctacgcct tcgagtacgc gcgcgccaac aaccggcgga aggtcacgtg
     3061 cttcacgaaa gacaacatca tgaagataac ggacgggctc ttccaccgcg tcttcgacga
     3121 gatcgccgcc gagtacgccg acatagagaa cgagcactgg atcgttgaca taggctccgc
     3181 caagctcgcc gacacgcccg aggcgttcga cgtggtcgtg ctcccgaacc tctacggcga
     3241 cgtgctctcc gacgtggccg cgcagatagc cggctccgtg ggcctcgccg gctcggcaaa
     3301 cataggtgac tcgatagcga tgttcgaggc catacacggc agcgccccgc gccgcgccgg
     3361 ccagaacctc gcaaacccct ccggcctctt cctcggcgcc gtgatgatgc tcgtccacat
     3421 cggccagacc gaggcggccg agcgcgcgca caacgcgtgg ctccggacga tggaggacgg
     3481 cgtgcacaca tacgacgttt actccgaagg agtgagtaaa gagaaggtcg ggacgcgcga
     3541 gttcgcgcag gccgtagtcg cgcgcctcgg gcagaagccg gagcggctca aggccgtcag
     3601 ctacaagtcg ggcgccgcgg cggggacgag cttcgcaagc cgcatggcgc gcgaggccgc
     3661 cgcgtcgaat aagcagaccg tgggcgttga cgtttacctc gaatggtcgg gcgggagcgc
     3721 cgaggacttg ggcggcgccg tctcgaagct ctcgggcgac ggcctgcggc tcacctccat
     3781 cagcaaccgc ggcgtcaagg tctggcccgg cggccacacg gagaccttct gctccgacca
     3841 ctggcgctac cgcttcacct ccgccgagtc ggagggcggc cgcgaggtcg ggcaccgtca
     3901 gattgcgtcg ctcctgtcgc gcttcgccga cgccggcctc gacttcataa agacggagaa
     3961 cctctgcgac ttcgacggca agcccggcta ctcgcacgcg caggagtaaa gggaaaggag
     4021 ctgagccaat gtctgcttcg tccgcttctt cggccgagcg gcccggtgcc ggcgagcacg
     4081 cgccctacta cgagcgttac gtctcgctcg tccccgacgg cgacgtggtc gccacgctcg
     4141 gccgccagtt cgccgagacg agggcgctgc tggaaggaat cagtgaggag aaggccggct
     4201 cgcgctacgc cgagggaaag tggagcataa aggagctggt cggccatctc attgacgccg
     4261 agcgcgtctt cgcctaccgc gccctgcgct tctcgcgagg cgacactacg cccctgccgg
     4321 gcttcgagca ggacgactac gtgcgcgccg ccgacttcga ctcgcgcacc ttgcgctcgc
     4381 tcgccctcga gttcgagcac gtgcgcgcct cgaccatcct catgctgcaa gggctggggg
     4441 ccgaggcctg ggggcggcgc ggaacggcca gcgacagcga ggtgagcgtc cgcgccctcg
     4501 catacatcat cgccggccac gaactgcacc acgtccgcat actgcgcgag cgttacctgt
     4561 gagcgagcgg ttaatgagcg aaggcggcag agaagaaggc gccgaggcgc ggccgctcgt
     4621 cgccgtcata atgggcagca cgtccgactg ggagacgatg cgccacgccg cggaggtgct
     4681 caagagcttc ggcgtcgagc acgagtgccg ggtggtttcg gcacaccgca cgcccgagtg
     4741 gatggcggag ttcgcgcgcg gggccgaagg gcgcggcctc gaagtcgtaa tcgcgggcgc
     4801 gggcggggcg gcccacctgc cggggatggt cgccgcgcag acgctccttc ccgtcctcgg
     4861 cgtccccgtc aggagccgcg cgcttcaggg cgttgactcg ctcctctcta tagtgcagat
     4921 gccggcgggc gtccccgtcg gcacgctcgc aatcggcgag gccggcgcga cgaacgccgc
     4981 cctcctcgca gtcgccatac tctccacgac gcggcccgac ctgcgcgaaa agctcaggcg
     5041 cttccgccgc gagcagaccg agaaagtgcg ggagtccacc ctgcccgtat gagcgcagtc
     5101 ctgcccggag cgaccatcgg cgtgctcggc agcggccagc tcggccgcat gttcgccatc
     5161 gccgcgcgcc gcatgggcta ccgcgtccac accttctcgc ccgactccga cactcccacg
     5221 ggccaggtcg cggacaagga gtacgagcac gcttacgacg acctcgacgc cgtccgcgag
     5281 ttcgcgcgcg gcgtatcggt cgtgaccttc gagttcgaga acgtcccggc cgagtcggtc
     5341 gaggcggccg agagcctcgc gcccgtccgc ccctccggct ccgtgctcta caccacgcag
     5401 aaccggctgc gcgagaaaaa cttcctcgcc cgctggggct tccccatcac ggccttccgc
     5461 cacgtgacct cggccgaagg cttgcgcgcg gcgctcgcgg aggtaggctg cccggccgtg
     5521 ctgaagacgg ccggcttcgg ctacgacggc aaggggcagt cgcgcatcaa ttcggagtcg
     5581 gacgttgcgc ccgcactcgc cgccctcggc ggccgagagg ccgtcctcga agccttcgtt
     5641 gacttcgagc gcgaggtctc cgtcgtcgcc gcgcgcggcg cgggcggcga gttccggcac
     5701 tacggtgtca tagagaacac gcaccgccgc cacatactcg acctctccgt agctccggcc
     5761 ggcgtcacgg agcgcgtggc gcgcgaggca gtcgagatag cgcgcagcgt cctcgaagcc
     5821 ctggacgtgg tcggcgtcat gtgcgtcgag ttcttcctca cgcgagacgg ccgcctcctc
     5881 atcaacgaac tcgccccgcg gccgcacaac tccggccact tcaccttcga cgcgtgcctg
     5941 acgagccagt tcgagcagca gctccgcgcc gtctgcggcc tcccgctcgg ctcgaccgag
     6001 ctgctgaagc cggccgcgat ggcgaacctg ctcggcgacc tgtggcacgc gggcgagccc
     6061 gactggcgcg ccgccctcac cttcccgtcg gtcaagctgc acatctacgg caagaccgaa
     6121 gcgcgccgtg ggcgcaagat gggacacctc accgcgctcg cctccacgcc cgccgaggcc
     6181 gcacgcacag tgctggccgc ccgcgccgcg ctcacgcgct aaatcagagc aaagacgaag
     6241 aaatgatgga tgcggcagtg tcgaatgaaa ggcagaggct ttttatctgc cgcccgccgc
     6301 cgcggcgtct catcatttga ggtcgctgac gaggacgaca tcgttgttga cattgttccg
     6361 cgacaggacg agcaggcggc cgtcgcgcga ccagtcgaag tagccgatct catcggactt
     6421 gaagtcggtc agttgcgtgg gcttgccgcc gtcagtgggc tggctccaga ggttggagac
     6481 gcccgcgcgc ctctgtatgt agttcagcgc gcgcccgtcc ggcgcccagc gcagtttcat
     6541 cggccagacg ttaacgtcaa acgtcttgac gggcggcccc ccttcggctg ggatgatgac
     6601 gaccttccac cgggtcagct tctcgtcaaa gtagccgcag gcgatctgct tcccgtccgg
     6661 cgagacggcc gggtcgctcg aagtgtaatc ggtcagtggc acggagtcgc ccccttcgat
     6721 agggactctc gtcacccttt gcttgccgga agtggtggac gtgtaaaaga cccaacggcc
     6781 gtcgggcgag cagtgcgggc tcagatcgcg ctggccgttc gtcagcctcg tcgggttccg
     6841 gccgtctatg tctatcctcc agatgttctg cgcgccggcg cggtctgaga cgaagacgac
     6901 gtaacggccg tcgggcgaga ccgtcggcct gatgttgctc gacgcgtcgg cggtcagttg
     6961 tttttggccc gtcccgtccg cgttcgcaat ccagatgttc gggttaccgc ccgccgacga
     7021 cgatgacgac gtgtaaacca cgcggccgtc gggggcgaag gcgacgccgt ccagcccgtc
     7081 atacttgttg gtggtgatgc gcgcggcccg cgcggcgtcc gcgcccggcg cgacccagag
     7141 gctcgaaagc cgctcgaagg acgtagtgac gaaggcttgc gagtccgccg tcatcctgac
     7201 ccagcggtaa tcgtacacgt cgttagttat cctgcgcgtc tcgccgccag ggtaagaggc
     7261 gtaccagatt tgcatgggga attccgacgg ctggtctgag cctgtgaaga tgaagccgct
     7321 gccgtccctg agccacgcga actgtccgag cgaagaccag cgctgagaat tgatctgggt
     7381 caccgtccca tctttcaccc gcaccgtgac catttgccgg tagaggccgt tggcatccac
     7441 acccctgatg cccataagga ttacttcacc gtcgggcgac cacgccggcc cgccaatgta
     7501 cgtgacccag gtggtgatgt acgtcatgag cctctgctct cccgtgccgt ccgcgttcgc
     7561 aatcatcagc gcggtcactc cctcggtcgg atagccgcga aggaaagcca tgcgcttgcc
     7621 gtctggagaa aaggtggggg gcgtgtccag gtcttcgcct atcacctgcg tcgcgccgcc
     7681 gaggacgggc atcttgtaaa cgatgctcgg cacgttcgtc cccgtcttgg cgtagtagat
     7741 gtagttgccg tccgcagaga agaaagagca gcagagaagg acgcctgcgg gagggactat
     7801 ctccttgtcg ctgcccgtcg ggatgtgcat gagccggacg ctctcctgcg cacgctcgcc
     7861 cgtgacatag actaggtact tcccgtcggg cgagatgccg gggaagttgg ccttgccggt
     7921 cgtcgtgagc ctcgtcatct tgatcttgcc gaaaggttct gacgatttcg cgcgcagata
     7981 gccgaagtat ttaagaccta cggcgatgcc tgctgccgcg agagccaaca cgcccagggc
     8041 gactgccgtc cctcgcttgt gccgcttgat tacgccggcg acgtatgccg cgctcgacac
     8101 ggtgtgcgcg ccttcgacca gcgcggttcg cgccgccgcg ccttcggccg tgccggcgcg
     8161 cgcgccgtcc gccgtcgagc cgccgctcga cggcgacacg gagcgctcga tctccgcgtc
     8221 aagctcaagc ctgcgtttga ggttgcgcag gtcaatcaat aaatccttcg ccgtctggta
     8281 gcgctcgccc gcctccttcg ccagcgcctt cgagacgatg cgctgcaact cttcggggac
     8341 gccttcggcg cgggtcgaaa gcggcggcgg ctcttcgtcc tgaatggcta tgacttggcg
     8401 gtgtatgtcc gcgccctcga agggcaggcg tcccgcgacc atctcgtaga ggacgacgcc
     8461 caaagaccat atgtccgtgc gggcgtcggt ggcgcggccg cgcgtctgct ccggcgacat
     8521 gtaggccacc gtccccaaaa caagccccgg ctccgtctgc acgaagggcc gcgtcgccgc
     8581 ctccgggtcg gttgcgcgct cggcgagctt cgccagccca aagtcgagca ccttaacgta
     8641 gccgtcccga cgcctgacca taacgttctc gggcttcacg tcgcggtgga ctaccccggc
     8701 ctcgtgcgcc gcgtcgaggg cggcggctat ctgtatggcg aggtcgagga cttcgtgcag
     8761 cttcacgcga cggcccgaca ggtgtctcct caaagtctcg ccgtctatga actccgtggc
     8821 gatgaagttt gcgccgtcgg cctcgccgac ctcgtagatg gtcagtatgt tcgggtggtt
     8881 gagggccgag acggccttcg cctcctgctc gaagcgctgc atgcgctggc ggtcggaggc
     8941 caatccggcg ggcagcacct tgagcgcgac gttgcgttcg agccgggtgt cgcgcgccag
     9001 ataaatttca cccatgccgc cggccccgag ctgccggagc acgacatagt ggccgacctc
     9061 ccgcccctcc tcaaggcgcg ccctcccggc ttcgaggagc ggggccgcga ccctcatggc
     9121 gcgcgagctg atgaggctgt cgtcttccga gcgctcgtag gaggcgatga gggattcgac
     9181 ctcgccgcgc aacgccgcgt cgccggcgca cgcctcttcg aggtaggccg cgcgcctgtc
     9241 ggcgggttgt tcgagcaccg actgcaatac gcggtcaacc tttttccagc gttcggggtt
     9301 catcgtgaag gggcgtgagg cgcgcggcgc gcgccttccg tctaggcttc cgtcgtgtcg
     9361 cccttgctga cggcgtgata gagccaggct ttcgccgact cccagtgccg cttggccgtg
     9421 cgcgacgaga tgccgagcac gtcagccacc tcgtcgaagg tcaggccgag gaagtgatgc
     9481 agctcgacga cgcggccctt ctcgggatca tgtgtttcga ggtcggcgag cgccgagtcg
     9541 agggcgagga ggtctgcggc gcgctcgggc gtcatcacgg gcgcgccctg ccagagcagg
     9601 tctgcggcgt gctctaacgt catggcaccg gcgtcgtcgg gctggacggc ccgcccaccg
     9661 ccgccgcgct tccggcggcg gcgcgagcgc gcgtggtcaa tgagaatctg gcgcatcacg
     9721 cgcgcggcga ccgcgaagaa gtgcttccgg ctctcccact ccatgccgcg ctggccggcg
     9781 agcttgatat atgcctcgtt gacgagcgcc gtggtctgca aggtgtggcc gggctgctcg
     9841 cgtctcatgc ggcggcgggc caggcggcgc aactcgtcgt aaacgagcgg ggctaggcgg
     9901 tcgagcgccg ccttgtcgcc gtggctccag gcggcgagaa gcctcgtcac ttcgtgcggc
     9961 gcgtcgtcgt ccacgcgggc gattccaatg ggtcgggcgg cgcgaggaag ggcgaattgt
    10021 agcactttaa aagaggcccg cgcctgtttt taaagagaat cgccgcgggc gcgcccggcg
    10081 taaaagactc cacctgtcac ttttttcccg ccgctatcgc ttctccgtgt gtaggccgcc
    10141 ccgtagggga ttaaggtgga gaggagcggg aagatgatgc aaagaattct gtcaatcacg
    10201 ttctgcgtct tgatggcggg caaccacttt gccgcggggg gccgcccccc ggcgccgaac
    10261 ggcggggacg gccacgccgc cgtgcgcaca gaccgggccg ggctgtcgtg gccggaggcc
    10321 cccgccgggc ttcgcgcggc cttcgagcgg gcgcgatacc gcgcagggag tggggccggc
    10381 ggggtgacgg tctcggaagc ggaggacggg ggcgcgccgc ccgccgcggc gttcgtcccg
    10441 ctcgtcgagc agcagcggtt gcaggcgtcg gacgccgccg tcaacgacca gttcggctac
    10501 tcggtcgcgc ttagcgggga cacggccgtc gtcggcgcac gcttcgacga ccaccccggc
    10561 aagactgacg caggctcggc ctacgtcttc gtcaggagcg gcggagtgtg gactgagcag
    10621 gcgaaactgc aagcgagcga cgccgacgcc catgacttct tcggccactc ggtcgcgctc
    10681 gaaggcgaca cggccatcgt cggggcttac gccgacgaca ccggcaagac ggacgccggg
    10741 tcggcttacg tcttcacgcg cagcggcacg acgtggacgc agcagcagcg gctacaggct
    10801 cgtgacgccg acgccagtga cctcttcggc gtctcggtct ccatgagcgg cgacatggcg
    10861 ataatcggcg cgtattggga cgaaaactct ggcatcttcg ccgccggctc ggcctacgtc
    10921 ttcaccagaa gcggcggcgt gtgggccgag caacagaagc tgcaagcggg cgacccctcc
    10981 gcgtccgacc agttcggctg gtcggtcgag gttgacggcg acacggcgat ggtcggagca
    11041 acccaagacg acaacggcag catgctgagc gtcggctccg tttacgtctt cacgcgcagc
    11101 ggcggcgcgt ggacgcagca gcagaagctg caagcgagtg aaccgggcta cggtgacagt
    11161 ttcggcgtct cgatctcttt gagcggcggc acggcgttca tcggcgctta cgacgacgac
    11221 aacagctcgg cgaacgcagg ctcggcctac gtcttcgcca gaagcggcgg ggtgtggaca
    11281 gagcagcagc ggctgcaagc cggcgacgcc ggccccaatc gcttcttcgg ctggtcggtc
    11341 gcgctcgaag gcgacacggc cgcggtcggc gctctcgata acgcctacat cttcacgctc
    11401 gccggcgcga cgtgggccga gcagcagaag cttccggcga ctggcgacct ggtctcggtc
    11461 gcgctcgacg gccgctcgct gatagccggg gcctaccgtc acaccaacag cggcgggacg
    11521 tgggccggct cggcttacgt tttctcccgt cccgcgaccg acatggagat caacagccgc
    11581 gactccgcag accccgtgcc ggtcgggggc tcattcacct acacgcttcg cgtctataac
    11641 cgcggccccc gcgaggccca caacgtcacg gtcacagact ccatcccttc ggggctgacc
    11701 gcgtcgggcg tgagcctgca cggggcaagc gactacaccg gcgcaggctg ctccgttgac
    11761 cccttagcca acagggtcaa ctgccagttg ggcacgatgc gtgtcttcga caacaccttc
    11821 gacggcgtcg tgaaaaaggg caaggccgtc gttatggtga cggtcacggc ggagcagccc
    11881 gggcagtaca cgaacgaggc cacggtgaac gcgagcgagt tagaccccga cacgtcgaac
    11941 aacaccggca ggcagacgac gaccgcgctc ggcatctcct cggtcgaggt cacgcccgac
    12001 gccgttcccg gcggcgcggc ctgcctgaag ccgtccgtga aggtgatgct gagcggcgcg
    12061 acgccatacg acactttcgt cgaactctcc gacgatctgg cggcgacggc caacataccc
    12121 gactcgtcct cgccgctgag actgcgagtt cccgcggggc agagttccgc gacggtcgag
    12181 gtggagacgc tggaggtcac ctcggcgcag gccgggcggg tgacggccgc ttacggcacg
    12241 tcgggcggcg ccgcgccgct gaccgtgagg ccgataggcg tgaagagcgt gtcggtctcg
    12301 ccttcctcgg tcgtgggcgg cgggcagagc gcggtcgccg
//
LOCUS       DASPKR010000706         6076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1409584, whole genome shotgun sequence.
ACCESSION   DASPKR010000706 DASPKR010000000
VERSION     DASPKR010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6076)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6076
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1409584"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..1233
                     /locus_tag="VD968_18550"
     CDS             100..1233
                     /locus_tag="VD968_18550"
                     /inference="COORDINATES: protein motif:HMM:NF013739.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE16446.1"
                     /translation="MRFYLELAPVAEALHDAALRSPGLAAASPLERLKLLARAGRVST
                     KILAGMGKRAADYLGGTSSRFRRFIDAQLQIFAQAASRDCAYLYAAVALAQPLRGMYT
                     MRGGAQSLPDSLAESIRKSGGTVRLNTPALRLAYDSRGRAAGVQLLSGETVEAGRAVI
                     SNLTVWDTYGKLVGAERTPPALRSQLKASRGWGAYLLFLNMEEGAAGRLPNERVLVLD
                     DWQEGEEFDPERSMFMFSASPGGAAGGARSVTVSAFTDAEQWFSFHTDEAEHEAQDQR
                     ALEALWGRVHAALPELGSGVEVVETATPRAFYERTRRRLGMVGGTPRTPEALVGPGAL
                     THRTIVERLFIVGDTVFPGNGLAAVTHSALAAADEIERRKRSR"
     gene            complement(1362..2486)
                     /locus_tag="VD968_18555"
     CDS             complement(1362..2486)
                     /locus_tag="VD968_18555"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HYE16447.1"
                     /translation="MNTVLKGTVRGLLALALLSLTGSALAQTTRNERLISARAGGVNY
                     VEGDVKYRKPGEVNWQRASVKDDLKSGDEVRTGTDGRIEVLLNPGSYFRAGSGTEFEL
                     VDSSLDDLRLRLARGAAVVEATGYDGIALSIAVNTPQTRVLIVSGGVYRISVLASGVT
                     EVAVVKGRAYVGEGQGSFLKGGKVARVDSAGRVELAKLDKKKQDELDLWSKERGRELA
                     KLNDKFLRLKARVLLADADFDTMFGYSRYGHGVWFWDPRRHCYTFMPFFSGWGSAYGF
                     SYGGLYHGGCGNCPGNYYDYNNGYYSGGYYGGGGHSGGGSDSGGGRNITRGEAVGGNK
                     SGSGDVSPRPTMPSRSDPPSPPPSRSVDMPVRPEKTIQPR"
     gene            complement(2649..3857)
                     /locus_tag="VD968_18560"
     CDS             complement(2649..3857)
                     /locus_tag="VD968_18560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16448.1"
                     /translation="MPEPAPPERKLPPLPTRALSPRLRAMRERAMETAAEKRGLVWLG
                     EVGMTELSGWEYGARTKELADVIGTEDLTGLGRLGVAGGMLPEGTDLAALAVSFTALS
                     AGATYSPLDKQVLLVSDDPKGGGFRNGALLAHEFVHALQDQHFDLMKMLLARPFNFDR
                     TEALFAVVEGDATAVERRVQQGDSWARKALEEIARAEDARFAPYRGGIGALFPPLLTE
                     TFIFRYRDGVRFVESVRRARPEGGLDELFRRPPQSSEQVLHPEKYFSGEAPRDVQLDV
                     RAFEERGWRMTASTPLGEVGVRGLLMAGVAVGEARRAAAGWGGDRAFVFEREGKPALF
                     VWKTVWDKPSDAREFFRAYGALKGGARQDGPAAAWPEGALQTRVVIEGDAVTVLRGAA
                     SDLDEALGLS"
     gene            4025..4156
                     /locus_tag="VD968_18565"
     CDS             4025..4156
                     /locus_tag="VD968_18565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16449.1"
                     /translation="MRRENCSQIGSGFDASRAFQTAEQIDSSVWPGLWLEVSQIFND"
     gene            complement(4164..5855)
                     /locus_tag="VD968_18570"
     CDS             complement(4164..5855)
                     /locus_tag="VD968_18570"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE16450.1"
                     /translation="MRAGLWRTAALFVLLCALASSALPSKASGAAQSGRADEAGFLTL
                     ALPAGGEVLIENRRGGVSVEVWGEDYMALAAEPAGAASAGPSKRGARRKLPVSIERTD
                     STLSVKVTPAAAATRATPVDLRARVPSRARLKVYTSEGALDIRGVPASIVAQTISGEL
                     RLGMPAGADAQVTAQSLNGAVTLGEGVEARGGPRVVRGKFQGRWGSGASAVNLFSGRG
                     PISVSALPRSDAPRASAGPSAAASPRRADELTGGAFAERPAPPQAAETPQEVDEDEVV
                     RVESDLVTLNVSVAHRATGRGLTGLSAPDFRLFEDGVEQQIEHFESANAPFDLLLLLD
                     LSGSTAKVTGTIRAAARSFVEATRQQDRVAVVAFADDVAVVAPMTSDRRLLLSAIDRM
                     EAPKGDTRLYDSLAAAMDYANRAGEPSRRRALILMSDGLDSSLPNVDGEGSALEYEEL
                     RSRVQEFEGVLYTVWTSTEYEAFSPLDIQPETFDLVRDRMEELAEAGGGVFYEVERLE
                     DLSGAYARVVADLGTVYSLSYRPTNKQRDGRWRAIRIRLPAHPDAVARGKRGYNR"
BASE COUNT          940 a         2177 c         2036 g          923 t
ORIGIN      
        1 ttcggcagcc gcccggccgc gccctcttcc atgtttaaga agagaagata tgcgccccag
       61 ccgcgcgagg ctttgagctg agagcgcagg gcgggcggcg tgcgcttcta cttagagctc
      121 gcgcccgtcg ccgaggcgct gcacgacgcc gccctgcgct cccccggcct cgcggccgcg
      181 tcgccgctcg aacgcctcaa gctgctcgcg cgcgcgggcc gcgtgtcaac gaaaatcctc
      241 gccggcatgg gcaagcgcgc cgccgactat ctcggcggca cttcctcgcg cttccgacgc
      301 ttcatagacg cgcagctcca aatcttcgcg caggccgcga gccgcgattg cgcgtacctc
      361 tacgcggcgg tcgctctcgc gcagcccctg cgcggcatgt acacgatgcg aggcggcgcg
      421 cagtcgctcc ccgactcgct cgccgagtca ataaggaaga gcggcggcac tgtccgtctg
      481 aacacgcccg cgctccgcct cgcctacgac tcgcggggcc gcgcggcagg cgtgcagctt
      541 ttgagcggcg agaccgtcga ggccggccgc gccgtcatca gcaacctcac cgtctgggac
      601 acctacggca agctcgtcgg cgcggagcgc acgccgcccg ccctgcgctc tcagctcaaa
      661 gcctcgcgcg gctggggcgc ataccttctc ttcttaaaca tggaggaggg cgcggccggg
      721 cggctgccga acgaacgggt tctcgtactt gacgactggc aggagggcga ggagttcgac
      781 cccgagcgtt cgatgttcat gttcagcgcc tcgcccggcg gggcggccgg gggcgcccgc
      841 tccgtcaccg tctcggcctt caccgacgca gagcagtggt tctcttttca cactgacgag
      901 gcggagcacg aggcgcaaga ccagcgcgcg ctcgaagcgc tatggggccg cgtgcacgcg
      961 gcgctgccgg agctcggctc gggcgtcgag gtcgtagaga ctgcgacgcc gcgcgccttc
     1021 tacgagcgca cgcgccggag gctcgggatg gtgggcggca cgccgcgcac gcccgaggcg
     1081 ctcgtcggcc ccggcgccct cacgcaccgc acgatcgtcg aacggctctt catcgtcggc
     1141 gacacggtct tccccggcaa cggcctggcg gccgtcacgc actcggccct tgccgcggcc
     1201 gacgagatag agcgccgcaa gcgttcccgt taaaaataac atccgggggc tcgggccttc
     1261 ggccggccgc ctcggcgcgt cccgacatga cgcgctgaaa cttccggctt cgtcccgctc
     1321 ccccggacgg ggtgggaaac ctgattatag tgtcgccgcc ttcagcgcgg ctgaatcgtc
     1381 ttctcgggcc gcacgggcat atccaccgag cgcgaaggcg gaggcgacgg tgggtcggag
     1441 cgcgaaggca tcgtcggcct cggcgacacg tcgcccgatc cggacttgtt gccccccacg
     1501 gcctcgcccc tcgttatgtt gcgcccgccg ccggagtcgc tcccgccgcc ggagtgaccg
     1561 ccgccgccgt agtagccgcc cgagtagtaa ccgttgttgt agtcgtagta gttgccgggg
     1621 cagttgccgc acccgccgtg gtagaggccg ccgtaggaga agccgtaggc cgagccccag
     1681 ccggagaaga acggcatgaa cgtgtagcag tgacggcgcg ggtcccagaa ccagaccccg
     1741 tggccgtagc ggctgtagcc gaacatcgtg tcgaaatcgg cgtcggcaag gagcacgcgc
     1801 gccttcaggc gcaggaactt gtcgttgagc ttagccagct cgcgcccccg ctccttgctc
     1861 cagaggtcaa gctcgtcctg cttcttcttg tcgagcttag ccagctcgac gcggcccgcc
     1921 gagtcaacgc gcgcaacctt gccgcccttg aggaacgagc cctgcccctc gccgacgtag
     1981 gcgcgcccct tgacgacggc cacctcggtc acgcccgacg ctagcaccga tatgcgatag
     2041 acgccgccgc tcacgatgag cacgcgcgtc tgcggcgtgt tgacagcaat ggagagggct
     2101 atgccgtcgt agcccgtggc ctctacgacg gcggcgccgc gcgccagccg caggcgtagg
     2161 tcgtcgagag aagagtcaac cagctcgaac tcggtgccgg agcctgcgcg gaagtaggag
     2221 ccggggttca agagcacttc gatgcggccg tccgtgccgg tgcgcacctc gtcgccgctc
     2281 ttgaggtcgt ccttgaccga ggcgcgctgc cagttgacct cgcccggctt cctgtacttc
     2341 acgtcgccct cgacgtagtt gacgccgccg gcgcgcgccg agatgaggcg ctcattcctc
     2401 gtcgtctgcg cgagggcgct gcccgtgagt gagaggagcg cgagcgcgag taggccgcgc
     2461 accgttcctt tcaagacagt gttcatgtca caccttcctt aaaccgagtg aatgcggagc
     2521 ttcaggagga gagataaagt ctcgcgcgcc ctgaagcata ctcccaaccg cccggccggg
     2581 caagggtcgt tttaggggca ggcgggacga gggcgggccg cctctgtagg cccctttttc
     2641 ggtctaggct aagacaggcc gagcgcctcg tccaggtcgg aggcggcgcc gcgaagaact
     2701 gtgacggcgt cgccctcgat gacgacgcgg gtttgcaggg cgccctcggg ccatgcggcc
     2761 gccgggccgt cctgacgagc gccgcctttc agagcgccgt aggcgcggaa gaactcgcgc
     2821 gcgtccgaag gcttgtccca gacggtcttc catacgaaga gggcgggctt gccctcgcgc
     2881 tcgaagacga aggcgcggtc gccgccccag cccgcggccg cgcgccgggc ctctccgacg
     2941 gcgacgcccg ccatcaaaag cccgcgcacg ccgacctcgc ccagcggcgt cgaggccgtc
     3001 atgcgccagc ccctctcctc gaacgcgcgc acgtcgagct gcacgtcgcg cggcgcctcg
     3061 ccggagaaat acttctccgg gtgcaggact tgttccgaag actgaggcgg gcgacggaag
     3121 agctcgtcca agcccccttc cggccgagcg cgccgcaccg attcgacgaa gcgcacgccg
     3181 tcccggtaac ggaatatgaa agtctccgtg agcagcggcg ggaacaaagc gcctatgccg
     3241 ccgcggtagg gcgcgaagcg cgcgtcctcg gcccgcgcta tctcttcgag ggccttgcgc
     3301 gcccacgagt cgccctgctg cacgcgccgc tcgacggccg tggcgtcgcc ctcgaccacc
     3361 gcgaagagcg cctccgtgcg gtcgaagtta aacggccgcg ccagcagcat cttcatcagg
     3421 tcgaagtgct gatcctgtag cgcgtggacg aactcgtgcg cgaggagcgc gccgttgcgg
     3481 aaccctcccc ctttaggatc atccgagact aagagcacct gcttgtcgag cggcgagtag
     3541 gtagcgcccg ccgaaagcgc cgtgaagctc acggccagag cggcgaggtc agtcccctcg
     3601 ggcagcatcc cgcccgccac gccgagccgg cccaagcccg tcaggtcttc cgtcccgatt
     3661 acgtcggcca gctccttagt gcgcgcgccg tactcccagc cggaaagctc cgtcatcccg
     3721 acttcgccca gccacacgag cccgcgcttc tccgcggccg tctccatcgc gcgctcgcgc
     3781 atcgcgcgca gccgcggcga gagcgcacgc gtgggcagcg gcggcaactt ccgctcgggc
     3841 ggcgccggct caggcatagc cagtgccggc cccggcgcca cagaccgcgg cgccgagctc
     3901 ttcttgcacg cccccgcaaa gcccgccagt agtaggacga tgaggaaccc gttgatgaaa
     3961 cgcttgcccc ttgctctcat gcttaggctt agacgcccga aacccgcccc gcgctgccga
     4021 caggatgcgc cgcgaaaatt gctcccagat aggctccggc ttcgacgcta gccgggcatt
     4081 ccaaaccgcc gagcaaatag actcctccgt ctggcccggc ctctggctcg aagtcagcca
     4141 gattttcaac gactagccct gtctcagcgg ttgtagccgc gcttgccgcg cgcgacggcg
     4201 tcggggtgcg cggggaggcg tatgcgtatg gcgcgccagc ggccgtcgcg ctgcttgttc
     4261 gtgggacggt aggagaggct atagacggtc ccgaggtctg cgacgacgcg cgcgtaggcg
     4321 ccggagaggt cttcgaggcg ctctacctcg tagaagacgc cgccgccagc ctcggccagc
     4381 tcctccatcc ggtcgcgcac taggtcgaag gtctcgggct gtatgtcgag cgggctgaac
     4441 gcctcgtact cggtgctcgt ccagacggtg tagaggacgc cttcgaactc ctgcacgcgg
     4501 ctgcgcaact cttcgtactc gagcgcggag ccctcgccgt ccacgttcgg cagagagctg
     4561 tcgagcccgt cgctcatcag tatcaacgcg cggcggcgcg agggctcgcc cgcgcggttc
     4621 gcgtaatcca tcgccgcggc cagcgagtcg tagaggcgcg tgtcgccctt cggcgcctcc
     4681 atacggtcaa tcgcggagag gaggagcctg cggtctgaag tcatcggcgc gacgacggcc
     4741 acgtcgtcgg cgaaggcgac gacggcgacg cggtcttgct gtcgcgtcgc ctcgacgaag
     4801 ctgcgcgccg cggcgcgtat cgtccccgtc accttcgcgg tcgagcccga aaggtcgagc
     4861 agaagaagga ggtcaaaggg cgcgttggcc gactcgaagt gctctatctg ctgctcgacg
     4921 ccgtcctcga agagccggaa gtccggggcc gaaaggcccg tgaggccgcg gcccgtcgcg
     4981 cggtgcgcga cgctcacgtt gagcgttacg aggtcgctct cgaccctcac gacctcgtcc
     5041 tcgtcaacct cctgaggcgt ctcggccgcc tgcggcggcg cgggcctctc ggcgaaagcc
     5101 ccgcccgtca actcgtccgc gcgacgcggt gaagcggcag cgctcggccc cgcagatgcg
     5161 cgcggcgcgt cgcttcgcgg cagggccgag acgcttatcg ggccgcggcc cgagaagagg
     5221 ttgacggcgc tcgcgcccga gccccagcgc ccctgaaact tcccgcgcac gacgcgcggg
     5281 ccgccccgcg cctcgacgcc ttcgccgagc gtcacggcgc cgttaagcga ctgcgccgtg
     5341 acttgagcgt cagcgccggc gggcatgccc aggcgcagct cgcccgagat ggtctgcgcg
     5401 acgatggagg caggcacgcc gcgtatgtcg agcgcgcctt cggaggtgta aaccttaagc
     5461 cgcgctcgcg aaggcacgcg ggctcttaag tccacgggcg tcgcgcgcgt tgcggccgct
     5521 gccggcgtga ccttgaccga tagcgtgctg tccgtgcgct caattgagac ggggagcttc
     5581 ctgcgcgcgc cgcgcttcga cgggccggcc gaggcggcgc ccgcgggctc ggcggccagc
     5641 gccatgtagt cctcgcccca gacctctacc gagacgccgc cgcggcggtt ctcaatcaaa
     5701 acctcgccgc ccgctggcag cgcgagggtc aggaagcccg cctcgtcggc ccggcccgac
     5761 tgcgccgcgc ccgaagcctt tgacggcagg gctgatgagg ccagcgcgca gagcagcaca
     5821 aagagcgccg ccgtccgcca aagtcccgca cgcattttcc gagtcgcagc cacgccggtt
     5881 tgatgcctcc cctctcgccc gacggttgcc gccaaattct taccacaaag gcacgaacgc
     5941 acgaaaggga aagtctctcc tttcgtgcgt tcgtgccttt gtggtaagaa tttggcggca
     6001 accgtcgggc gagaggggag gcatcaaacc agcgtggctg ccactcggaa aatgcgtgcg
     6061 gggctttggc ggacgg
//
LOCUS       DASPKR010000707         4687 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1537178, whole genome shotgun sequence.
ACCESSION   DASPKR010000707 DASPKR010000000
VERSION     DASPKR010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4687)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4687
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1537178"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..815)
                     /locus_tag="VD968_18575"
     CDS             complement(<1..815)
                     /locus_tag="VD968_18575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16451.1"
                     /translation="MRRSILLALAFSTAALFGLSAPAAAQDQPTIQYDSLQVTAWTNN
                     SYKGNYDVWSWVPKMEFRYNGPVPSGSQLYAEFQQPGGSAPWLKFDCETSETQKGYWH
                     ETECGGRQVEDKSITAVGPVNFAIKMRNELAGTDTTLFTGKMKVAKTLSNEHGPKAAN
                     KFVYYVDHDWNLPIGYVYYTPDSVYGWDYPQFNVAFWVRGEAVRFDPHLFYKGQEVGR
                     LFMDGMQVGKASCEARVENNTTHTVNDGVPQRAKWSRVECSFPVVKRWDKTDGG"
     gene            1143..1718
                     /locus_tag="VD968_18580"
     CDS             1143..1718
                     /locus_tag="VD968_18580"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYE16452.1"
                     /translation="MAEALVDSMPEAAQTAAAPAPAFDEAFTLHHRAVYRAAYALVRD
                     TGLAEDVTQEVFLKLYQHLGSLQNGEHVRPWLLRVATNTALNTIRSRSRSGAREDEFA
                     HAATAGGHGGSGPVGIEADYERRAEIDEARRALEQVKEPMRSCLLLKQQGLSYREIAQ
                     TLSINEVNVGSLIARGRKEFMRVYGKIGGRR"
     gene            1715..2653
                     /locus_tag="VD968_18585"
     CDS             1715..2653
                     /locus_tag="VD968_18585"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HYE16453.1"
                     /translation="MTKRCLDEAVIQAYLDGELSPDSTKGALAHFAACEGCSAALADA
                     MSESAFFAEAFGPDESLAVPTEVLRANVTAAVARLESADGAQAARKPGWSLSSMLAPL
                     AGLLSFNPRQAAAFASVLAVVAFAAIFFIVQRQAPQQPASPEREVARHDTAEQRTPKV
                     TPPDAPADSVIVDDDNAVGPVGGVTPSGGRFVKAAGSKAAVRARSSAAPKGEAKSRAK
                     AKDVVPGEQNYLQAIASLEQTIKLGGEAVLTPSVRAQYERNLAVINKAIEETRGVAAR
                     DPKDKDAVGFLLTAYQSKVELLSTVADQAQVAALGR"
     gene            2672..3748
                     /locus_tag="VD968_18590"
     CDS             2672..3748
                     /locus_tag="VD968_18590"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HYE16454.1"
                     /translation="MKFPSFITVAALLLALPFGASAQKTKSAAERAAEKAAEDAADAV
                     PPEDFALERRAAAEPSVVVTICVASGNVTVRGWDRGEVRARSDNAGSLRLLTPNVQPA
                     PRVEVLVSEERDQELSQGDCGSTTGLEVTVPRGATVSLRVREGHAEVSGVTEARVEAL
                     SGDVDVRDVSKAVEVNCMSGDVTLEDSGGRTRVRTVSGAVEVRNVRALSPGDELEATS
                     TSGDVIIEGVTHSRVSGATVSGNVLYTGSLAGGGSYDFKTISGDVTVELPPASSFNLR
                     ARVIADGEIITDFPVRMAGAAAGAPPAPPAAPEPGNSRRPPHSPPHPPGSGQTRLDGT
                     VGSGGGGAVLTLSSFNGTLHLKKH"
     gene            3919..>4687
                     /locus_tag="VD968_18595"
     CDS             3919..>4687
                     /locus_tag="VD968_18595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16455.1"
                     /translation="MRKRANSRKNLVAAAALAVVSLLAGAGCAGAGDAAAAHAAQGAA
                     QQQGNEWRWRGSLSAGRAIEVKGVNGGIEAEPSSGGEVEVIAVKSARKSNPDDVRIEV
                     IEHAEGVTVCAVYPTRDGDKPNVCAPGSGGRMSTRNNDVSVHFRVRVPAGVRFEGRTV
                     NGEVKAEGLSADVVATTVNGSVRVKTTGLARAQTVNGSIRAWMGRADWSNELEFQTVN
                     GAIDLSFPASLSADVHAETVNGEITSDFPLTVTGRFSK"
BASE COUNT          761 a         1513 c         1670 g          743 t
ORIGIN      
        1 ccgccgtccg tcttgtccca ccgcttcacg acggggaagc tgcactcgac gcgcgaccac
       61 ttcgcccgct gcggcacgcc gtcgttgacc gtgtgcgtcg tgttgttctc aacccgtgcc
      121 tcgcaactgg ccttgcctac ctgcatgccg tccatgaaga gccggccgac ctcctgaccc
      181 ttgtagaaaa ggtgcgggtc gaagcgcacc gcctcgccgc gcacccagaa ggcgacgttg
      241 aactgcgggt aatcccagcc gtaaacgctg tccggggtgt aatagacgta gccgatgggc
      301 aggttccagt cgtggtcaac gtaatagacg aacttgttgg cggccttcgg gccgtgctcg
      361 ttcgagagcg tcttggcgac cttcatcttg ccggtgaaga gcgtcgtgtc ggtgccggcc
      421 agctcgttcc gcatcttgat ggcgaagttg acggggccga cggccgtgat gctcttgtcc
      481 tcgacctggc ggccgccgca ctcggtctcg tgccagtagc ccttctgggt ctcgctcgtc
      541 tcgcagtcga acttcagcca gggggcgctg ccgccgggct gctggaactc ggcgtagagc
      601 tggctgccgc tggggacggg gccgttgtag cggaactcca tcttgggcac ccagctccaa
      661 acgtcgtagt tgcctttgta ggagttgttc gtccaggctg tcacctgtag ggagtcgtac
      721 tggatggtcg gctggtcttg cgccgcggcc ggcgcgctca ggccgaaaag ggctgcggtc
      781 gaaaacgcca gggcgagcag aatgctcctt ctcataattc gatgcctcct cggcaccggc
      841 gcgcgcggga caggacgggc cgtgccttca atttttcagc ggttttgccg gtgaaccggc
      901 gtcggtgaag ttctgtcggg ttgccgtgtg gcggcagtat ccgactgtcc ctcggcgcct
      961 gtcaacgttt atccgtgggc gcagccggcc gcgcctgccc gaaaagagga cggcgcgggg
     1021 ggcgccgcct tcgtcggcgt gggggcgggc tggctttctg ttaaaattcc ctgccacaaa
     1081 ccgcgtgccg acggtgttta catgattgag agtggcggat ttagcgcggg atgagtgaac
     1141 gagtggcaga agctttggtt gactcaatgc cagaggcagc gcagacggcg gccgcaccgg
     1201 cgcccgcatt cgacgaggcg ttcacgctgc accaccgcgc ggtctatcgc gccgcctacg
     1261 cgctggtgcg cgacacgggg ctcgcggagg acgtgacgca ggaggtcttc ctgaagctat
     1321 accagcacct gggctctttg cagaacggtg agcacgtgcg gccgtggcta ttgagggtcg
     1381 cgacgaacac ggcgctcaac accattcgca gccgctcgcg cagcggcgcg cgcgaggacg
     1441 agttcgctca cgcggccacg gccggcggcc acggcggctc ggggccggtc ggcatcgagg
     1501 ccgactacga gcggcgcgcc gagattgacg aggcgcggcg ggcgctcgaa caggtgaagg
     1561 agccgatgag gagctgtctg ctgctcaagc agcaggggct ctcctacagg gagatagctc
     1621 agacgctctc gataaacgaa gtgaacgtcg gcagtttgat agccaggggc aggaaagagt
     1681 tcatgagggt ttacggcaag atcggagggc gccgatgacg aaaagatgtc ttgacgaggc
     1741 agttatacag gcttacctgg acggcgagct ctcccccgat tcgaccaaag gcgcgcttgc
     1801 gcacttcgcc gcgtgcgagg gctgctcggc ggccctggcc gacgccatga gcgagagcgc
     1861 cttcttcgca gaggctttcg gccccgacga gtcgctcgcg gttcccacgg aggttttgag
     1921 ggcgaacgtg acggccgccg tcgcgcgtct cgaatcggcg gacggcgccc aggccgcgcg
     1981 caagcccggg tggagtttga gctcgatgct cgccccgctc gccggccttt tatcctttaa
     2041 cccccggcag gccgcggcgt tcgcgagcgt gctggccgtg gtcgccttcg ccgcaatctt
     2101 cttcatcgtg cagcggcagg cgccacaaca gccggcctcg cccgagcgtg aggtggcaag
     2161 gcacgatacg gcggagcaga ggacgccgaa ggtcacgccg cctgacgcgc ctgctgacag
     2221 cgtgattgtt gacgacgaca acgccgtcgg gccggtcggg ggcgtgactc cgtcgggcgg
     2281 ccgcttcgtc aaggccgcag gctctaaggc ggcagtcagg gccaggtctt ccgccgcgcc
     2341 gaagggcgag gcgaagtcgc gggcgaaggc gaaggacgtt gtgccgggcg agcagaacta
     2401 cttacaggcc atcgcgtcgc tggagcagac gataaagctc ggcggcgagg cggtcttgac
     2461 gccgtcggtg cgcgcgcagt acgagcgcaa cctcgccgtc atcaacaagg cgattgagga
     2521 gacgcgtggc gtggccgcgc gtgacccgaa ggacaaggac gccgttggct tcctcctgac
     2581 ggcctatcag agcaaggtcg agcttctctc gacggtcgcg gatcaggcgc aggtcgctgc
     2641 gctgggccga taattcggcc gggcttataa gatgaaattc ccgtcattca taactgtcgc
     2701 ggcgctcctg ctcgcgctcc ccttcggcgc ctcggcgcag aagactaaga gcgcagcaga
     2761 gagggccgca gagaaggccg ccgaggacgc ggcggacgcc gtcccgcccg aggacttcgc
     2821 gcttgagcgc agggccgcgg ctgaaccgtc ggtcgtcgtg accatctgcg tcgcttccgg
     2881 caacgtcacc gtgcgcggct gggatcgcgg cgaagtccgc gcccgctccg ataacgcggg
     2941 ctcgctccgg ctgcttacgc ccaacgtgca gccggcgccc cgcgtcgagg tgctggtctc
     3001 ggaggagcgc gaccaggagc tgagtcaggg cgactgcggc tcgacgaccg gcctggaagt
     3061 caccgtgccg cgcggcgcga ccgtgagcct gcgcgtgcgc gagggccacg ccgaagtctc
     3121 cggcgtcacg gaggcgcgcg tcgaggcgct cagcggcgac gttgacgtgc gcgacgtgtc
     3181 gaaggcggtc gaggtcaact gcatgagcgg cgacgtgacg ctcgaagact cgggcgggcg
     3241 cacgcgcgtg cgaaccgtga gcggcgccgt ggaagtccgc aacgtccgcg cgctctcgcc
     3301 cggcgacgag cttgaggcga cctcgacgag cggcgacgtg ataatcgagg gcgtgacgca
     3361 ctcgcgggtg agcggcgcga ccgtgagcgg caacgtcctc tacacgggct cgcttgcggg
     3421 cggcggctcc tacgacttca agaccatctc gggcgacgtg acggtcgagt tgccgccggc
     3481 gtcgtccttc aacctccgcg cccgcgtcat cgccgacggc gagatcatca cggacttccc
     3541 cgtgaggatg gcgggcgcgg ccgcgggtgc tccgcccgcg ccgccggctg cgccggagcc
     3601 ggggaattcg cgccgccctc cgcactcgcc gccgcacccg cccggctcgg ggcagacgcg
     3661 cctcgacggc actgtgggct ctggcggcgg cggcgcggtg ctcacgctca gctccttcaa
     3721 cgggacgctt cacctgaaga agcactgagt acgaaaggcc gaggcgtcgg catgagaggc
     3781 ccgcgggtcg cctaccgcgg gcctgaattt tttccgcccg agcagatttt tgccacgaac
     3841 gcggcccgcg cggtgttttc aggtcgagaa caggtaaacg gcggtcgtga aaacctttta
     3901 aaagccgagg agagaagcat gaggaagcgc gcgaacagtc ggaagaatct cgtcgccgcg
     3961 gcggcgctgg cggtcgtctc tttgctcgcg ggcgcgggct gcgccggcgc gggcgacgcg
     4021 gcggcggcgc atgccgcaca gggcgcggcg cagcagcagg gcaacgagtg gcgctggcgc
     4081 gggagcctgt ccgcgggtcg tgcgattgag gtcaagggcg tcaacggcgg catcgaggcc
     4141 gagccctctt cgggcggcga ggtcgaggtc atagccgtca agagcgcgcg caagagcaac
     4201 cccgacgacg tgaggataga ggtaatcgag cacgccgagg gcgtgaccgt ctgcgccgtc
     4261 tatccgacgc gcgacggcga caagccgaac gtctgcgcgc ccggctcggg cggccgcatg
     4321 agcacgcgca acaacgacgt gagcgtccac ttccgcgtgc gcgtccccgc gggcgtgcgc
     4381 ttcgagggcc gcaccgtcaa cggcgaagtc aaggccgagg gcctgagcgc cgacgttgta
     4441 gccacgaccg tcaacggcag cgtgcgcgtc aagacgacgg ggctcgcccg cgcgcagacc
     4501 gtcaacggct cgatacgcgc ctggatgggg cgcgccgact ggtcgaacga gttggagttt
     4561 cagaccgtca acggcgccat tgacctgagc ttcccggcga gcctgagcgc cgacgttcac
     4621 gccgagaccg tcaacggcga aatcacctcg gacttccccc tgaccgtcac gggccgcttc
     4681 agcaagc
//
LOCUS       DASPKR010000708         2515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_633476, whole genome shotgun sequence.
ACCESSION   DASPKR010000708 DASPKR010000000
VERSION     DASPKR010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2515)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2515
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_633476"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1546
                     /locus_tag="VD968_18600"
     CDS             <1..1546
                     /locus_tag="VD968_18600"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HYE16456.1"
                     /translation="AAVYLALARSKDGVAPDLDDAERVFRQLASAGARKLVLVTSAAV
                     YGASPHNTGLLTEATPTPRADASTVCGAWARLEALAAEALGETAARLVVLRHAPAPQR
                     GGRDYFSRLLGGRAALALPGHDPSLQLLDAEDLAEAVALALERARPGTYNVAPDGVVP
                     LRAALRLAGARRVPVPRTLQRAARAALAAGGKAAPAGQLDFIRYSWTISNEKLKAETG
                     FAPRRSSAEAAARFGGEMVNAQTNGRLRFDDFGMDERYTSRYGRTLFAFLERVYWRVE
                     AEGLEHVPREGRAVLAGTHRGFMPFDAVITLNLVGRAAGRYPRFLIHPGLIKFPFLFN
                     FHTKLGGVVACRENADRLLARGELLGIYPEGIRGAFSLYRDAYRLGKFGRDEFARVAI
                     RNRAPIVPFVNVGSAEIFPILARLDWGWWKRNTEWPFFPLTPTWPLLGPLPLPSKWHV
                     RFLPALNVHERYPPEAADDPRAVREVSLEVRRRMEAAWREMLGRRKHIFWGSIFGRGD
                     GEGLKI"
     gene            1543..2052
                     /locus_tag="VD968_18605"
     CDS             1543..2052
                     /locus_tag="VD968_18605"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HYE16457.1"
                     /translation="MRFEISNSVSVILILFLAVLTQAGCGGEEEPSEVVAGGAAPRFK
                     LKGLDGQAVDSGSLKGRPVVLNFWATWCGPCLVEIPELKALDAGGAARVVGVALDEGG
                     AEAVRPFAERHGIRYTLLLGDEETFTRFGGVGIPYTLLLDSSQRVVKIYRGPVTREAL
                     ERDLNAAGK"
     gene            2052..>2515
                     /locus_tag="VD968_18610"
     CDS             2052..>2515
                     /locus_tag="VD968_18610"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE16458.1"
                     /translation="MTKTTEHYDVAIIGAGLAGLALARQLLLCSDKRVLLVERRSEVP
                     PARQKVGEATVQMSAYYFSKVLDLEEHLLREHFVKYNPRFFWKAEGRAGDRYEDYSQS
                     YIRTPSNIATYQLDRNKLEAEMLRLNLARENFDFRAPAADLDVTLSDNGPHAL"
BASE COUNT          377 a          903 c          848 g          387 t
ORIGIN      
        1 cgcggccgtc tatctcgcgc tcgcgcgctc gaaggacggc gtcgccccag acctcgacga
       61 cgccgagcgc gtctttcgtc aactggcgtc agcgggcgcg cgaaagctcg tgctcgtcac
      121 gagcgccgcc gtgtacggcg cgagcccgca caacacgggg ctgctgactg aggcgacgcc
      181 gacgccgcgc gccgacgcct cgaccgtctg cggcgcgtgg gcgaggctag aggctctcgc
      241 ggccgaggcg ctcggcgaga ccgcggcccg cctcgtcgta ctgcgccacg cgcccgcgcc
      301 ccagcggggc gggcgcgact acttcagccg gctcctcggc ggccgcgccg cgttggccct
      361 gcccggccac gacccttcgc tgcaactgct cgacgcggaa gatttggcgg aggccgtcgc
      421 gctcgcctta gagcgcgcgc ggccgggcac gtacaacgtc gcgccggacg gcgtagtccc
      481 cttgcgcgcc gcgctccggc tcgcgggcgc aaggcgcgtc cccgtaccgc gcaccttgca
      541 gcgggccgcg cgcgcggccc tcgcggcggg cggcaaagcg gcgccggccg ggcagctcga
      601 cttcatacgc tactcatgga cgatctctaa cgagaagctg aaggccgaga cgggcttcgc
      661 cccgcgccgt tcgagcgcgg aggcggcggc gcgctttggc ggcgagatgg tcaacgcgca
      721 gacgaacggc cggcttcgct tcgacgactt cggcatggac gagcgctaca cctcccgcta
      781 cggccggacg ctcttcgcct tcctggagcg cgtctattgg cgcgtcgagg ccgaagggct
      841 ggagcacgtc ccacgcgagg ggcgcgccgt gctcgccggc acccaccgcg gcttcatgcc
      901 gttcgacgcc gtaattacgc tcaacctcgt cgggcgcgcc gcggggcgct acccgcgctt
      961 cctcatacac cctggcctta taaagttccc cttcctcttc aacttccaca cgaagctcgg
     1021 cggcgtcgtc gcctgccgcg agaacgccga ccggctgctc gcgcgcggcg agcttctcgg
     1081 gatttacccg gaaggcatac gcggcgcctt ctcgctctac cgcgacgcct accggctcgg
     1141 caagttcggc cgcgacgagt tcgcgcgcgt cgcaatccgc aaccgcgcgc ccatcgtccc
     1201 cttcgtcaac gtcgggagcg cagagatatt ccccatcctc gcccggctcg actggggctg
     1261 gtggaagcgc aacaccgagt ggcccttctt ccccctgacg cccacgtggc cgctgcttgg
     1321 gcctctgccg ctcccgtcga agtggcacgt gcgcttcctg cccgcgctca acgtacacga
     1381 gcgctacccg ccggaggcgg ccgacgaccc gcgcgccgtc cgagaagtga gcctcgaagt
     1441 caggcggagg atggaggcgg cctggcgcga gatgctcggc cgccgcaaac acatcttctg
     1501 gggctcgatc ttcgggcgag gggacgggga gggattaaag atttgaggtt cgaaatttca
     1561 aattccgtat ccgtgattct gattctgttt ctggccgtct tgacgcaggc cgggtgcggc
     1621 ggcgaggaag agccgtcgga ggtcgtggcg ggcggcgcgg cgccgaggtt caagctcaag
     1681 gggcttgacg gtcaggccgt tgacagcggc tctctcaagg gccgccccgt ggtgctgaac
     1741 ttctgggcga cgtggtgcgg gccgtgccta gtggagatac cggagcttaa ggcgctcgac
     1801 gccgggggcg cggcgcgcgt cgtcggagtg gctctcgacg aggggggcgc cgaggcggtc
     1861 aggcccttcg ccgagcggca cggcatcagg tacacgctcc tgctgggcga cgaggagacc
     1921 ttcacgcgct tcggcggcgt cggcatcccc tacacgctcc tgctcgactc ttcgcagcgc
     1981 gtcgtgaaaa tctaccgcgg ccccgtcacg cgtgaggcgc ttgagcggga cttgaacgcg
     2041 gccgggaagt gatgacgaag accaccgagc actacgacgt ggcgatcatc ggcgccggcc
     2101 tcgcgggcct cgcgctcgcg cgccagctcc tgctctgctc cgacaagcga gtcctgctcg
     2161 tagagaggcg gtcggaagtt ccgcccgcgc gccaaaaggt cggcgaggcc acagtccaga
     2221 tgagcgccta ctacttctcg aaggtgctcg acctcgaaga gcacctactg cgcgagcact
     2281 tcgtcaaata caacccgcgc ttcttctgga aggccgaggg gcgcgcgggc gaccgctacg
     2341 aggactactc tcagtcctac atacgcacgc cctcgaacat cgccacctac cagctagacc
     2401 gcaacaagct tgaggcggag atgctccgcc ttaacctcgc ccgcgagaac ttcgacttcc
     2461 gcgcgccggc cgcagacctc gacgtgacgc tctctgacaa cgggccgcac gcgct
//
LOCUS       DASPKR010000709         9556 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_243490, whole genome shotgun sequence.
ACCESSION   DASPKR010000709 DASPKR010000000
VERSION     DASPKR010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9556)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9556
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243490"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..351)
                     /locus_tag="VD968_18615"
     CDS             complement(<1..351)
                     /locus_tag="VD968_18615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16459.1"
                     /translation="MLSKCDTRLRCLFLAVTLGLFPYASAQARQQPRRPAPEKEDEVV
                     RITTELVQTDVAVFDKRGRFVDDLRPEQFELWVNGKKQAIAFFERVRAGSRVEEVLLT
                     GASSRGPGAGKSAEP"
     gene            592..1392
                     /locus_tag="VD968_18620"
     CDS             592..1392
                     /locus_tag="VD968_18620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16460.1"
                     /translation="MKSIDPDAAAEAAETRLAPARRAALIQAARARVSAGRRQSESVT
                     LACAVSLAVILGVACGMWITSLASAASVSRARPIQPPTPIQEEAMHASAPPGATEPRP
                     GNSADATRDGDEAPPLTEPVERPGAEAPRTRPAVATGARGEGSHAEAEPTETSERIVG
                     APEAGKKAASRRGVASPCALYASASSLTVRSGGATSLVLGGPGEAGRVSVTTPDWSNI
                     AVFSEGRAGGKGWVRYSVRSVSKRAGTYRVRFTTPCGTQTIPVTVTRQ"
     gene            complement(1465..1977)
                     /locus_tag="VD968_18625"
     CDS             complement(1465..1977)
                     /locus_tag="VD968_18625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HYE16461.1"
                     /translation="MFCPQCGQQQPSGEARFCPRCGLALTIHSALLAGDNTAAAAALY
                     TYHGPAQSPKRAATRRGAKMMFFSVVLFPIFFGLCFLINSPVPLFVPLTVFLTGLVWL
                     IYARLFGEELIDSHRFTAGGGLKGGGETHALGAPQFIPAPLFGRQGGRTSEIAQPPSV
                     TEGNTTLLGQ"
     gene            2128..2580
                     /locus_tag="VD968_18630"
     CDS             2128..2580
                     /locus_tag="VD968_18630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16462.1"
                     /translation="MSNKKGVRMKTTRGGLTLPFGILLLAAIACNFSASTANISDLKL
                     GKNPTASPETNSFGASDTVYAVATISNAPGAVKVTGRLVIADVEGEQSGPIPGLEKTL
                     DLPGSATATFTFTPPPAGFPKGKYKVEVLMLNEAGEQKDQKTAEFTVS"
     gene            complement(2708..3400)
                     /locus_tag="VD968_18635"
                     /pseudo
     CDS             complement(2708..3400)
                     /locus_tag="VD968_18635"
                     /inference="COORDINATES: protein motif:HMM:NF013353.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0047689 - aspartate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
     gene            complement(3434..4723)
                     /locus_tag="VD968_18640"
     CDS             complement(3434..4723)
                     /locus_tag="VD968_18640"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HYE16463.1"
                     /translation="MVSTEDTNGMGNDRPERLRADEYLYLAFLVFLPVLYPLRVKFYG
                     LVVAPGDALFAGAAVAWLVGLARGKARLRRSWFYLPLALYLAAAICSAAASEEPARSA
                     VKLAGKVYLISIAALTFNLVTSPALMRRAAGAWLVGTALTVAACLAGIVLFYAGFRGP
                     YNFALHSYGSLPHGHYPRVDGFFEYAAMLCNYLDVSFAVALVMLSAGWLSARWARPLI
                     VGIWVAAAFTLTPGIGGLALITGLWLGRRLNRTGRRGWGKLAVAWGCAAALAFFAAAA
                     LVLFSFGPEGAEVPLVRGRVEPSHRAEAWQTAFETFKQHPVFGRGVGTEVSSAGFIDF
                     SGHRVRLTDAHNTYLSVAGETGLVGLVTFGGILVFLLSGGSHSGRAPKTYLMLGLVGA
                     FFYEGLVGSFEDARHVWALFGLIAAAREGWRGQTSPV"
     gene            4796..5596
                     /locus_tag="VD968_18645"
     CDS             4796..5596
                     /locus_tag="VD968_18645"
                     /inference="COORDINATES: protein motif:HMM:NF022450.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2837 family protein"
                     /protein_id="HYE16464.1"
                     /translation="MSAQVAAVFALTFAIHMTGTLSYALRLAGVSTGRIAVAFSLTNL
                     LLLVSRTSNTFQAPLLAKHVEGNILRGTLGDAEWDFRVLMLAGTLATVVGGLLLPTAQ
                     TLFADAIVAFGRHRSIPRLVLRALTPVGLRHAAGALRAPSWRGVAGARLTGTPLRMAV
                     FNALATALLTVNVFASLYAGCLSPELRLTANNLSPIVNGLSTILLFVYIDPYLSVLTD
                     DVLAGREGESFFRKCVVLFVCARLAGTLLAQLLLLPAAQGIIIISKLL"
     gene            5608..6654
                     /locus_tag="VD968_18650"
     CDS             5608..6654
                     /locus_tag="VD968_18650"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HYE16465.1"
                     /translation="MSSNVPGDGASAAARDAPAVSVVMPVHNARPYLDESVGSILGQT
                     LQDFELVILDDASTDGTAEALRRWAAADARIRLFESPGKLGLSGSSNFVVRRARAPLV
                     ARMDADDIAHPERLARQREVFLRSPEVVLVGALCVGIDSRGRRVRPRDRWRLARPSLF
                     PPFPHSSVMFRRRAFEEAGGYREECAHWEDQDLFLRMTRRGRVVVLPEALVRYRYHAS
                     NSTGVAPDHNARVYSLRARCLEEFRAGRDYAPLLASCSLNGSSPVARAEALYQAGAMR
                     LWAGRAPEILGPVLSGGPLGRSPRALLTYLMAVWGAASPASLRHALRYFIRARDVLAG
                     RRVKDGGRYDWRLE"
     gene            6639..7685
                     /locus_tag="VD968_18655"
     CDS             6639..7685
                     /locus_tag="VD968_18655"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HYE16466.1"
                     /translation="MAFRVIVAGLGSRGREWLREIGRDESFELAGCVDVDEAALAGAS
                     SDSGLPRRSCFRDLGEALRNVECDAVVVATPADSHTEACEAALSRGRAVMVEKPFTTR
                     LADAVRLVALAERQRAPLLVAQNYRYMRAFRAARRLVSEGALGRVGAIVCQYFRVPHR
                     MRPSLASMEHSALWGVGVHHLDVLRHVTGREVTGVAAESYTQPWGELPRGGSLRAMLT
                     FEGGARAFYSATYESSGHEYFEGGQEFYMRLTGERATLHVFHRWLVLCERGRWPRLVR
                     RGRRAETEERTLLRQLAGALARGEAPEVSGRDNLQTMAVAEACVRSATCGGWVSPQEL
                     LLDCAGEKDAPGQR"
     gene            7666..9219
                     /locus_tag="VD968_18660"
     CDS             7666..9219
                     /locus_tag="VD968_18660"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HYE16467.1"
                     /translation="MHRGKDRFVLAIGIDAAEPSLVRSLIGRGEMPALRGLLGEGAWL
                     RVESPARVGSGSVWPTFITGSGPAEHGAYGEWCWRPETMGLERYSGRGLKPFWEALAR
                     EGMTVGVLDVPFMPLLGLTEGFEISEWGAHDVLDGRLVFSPARLAPLVTNGSARHPLS
                     RDRLDAAGPDDYESLKKVAAGCLEGARLRGELALRLVREARPQLALVAFTEVHHAAHY
                     LWHTLAPGDPIYGEGLKGLRAVAPTLEDIYREVDRQIGRLVLAAPAGATVLVFSLHGM
                     RPTRGIPSFLAPLLCESGFARLAGWGAQTWRGRAVSALAAVKRGMPAPVKRLYYRAMP
                     QTAAQRLAKPTMLPSYDWSQTRAFALPTDQHGWVRINLEGRESSGVVPPALYDATCRE
                     VEALLRSLVTEQGRPLAREVIRTAASAEDAIGLRLPDIVIHWHDAAHETPLRIKGRAA
                     EAPAAVGLKFTGQHALDGFCITNARGAAGADSVRAEDLHLQILDALSAAPRTEGARDR
                     LYPASRPVV"
     gene            9231..9422
                     /locus_tag="VD968_18665"
     CDS             9231..9422
                     /locus_tag="VD968_18665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16468.1"
                     /translation="MADKDDRSRAYVVIALVGEGDKKKYQGCKVIPHGEPYPAIYYQV
                     FGPASQRECEKWVAANCAK"
BASE COUNT         1497 a         3264 c         3314 g         1481 t
ORIGIN      
        1 gggctcggcc gactttccgg cgccggggcc gcgcgaagag gcgcccgtca acagcacctc
       61 ttcgacgcgg ctgcccgccc tgacgcgctc gaagaaggcg atggcctgct ttttgccgtt
      121 cacccacaac tcgaactgtt cgggccggag gtcgtcaacg aagcgcccgc gcttatcgaa
      181 gactgctacg tccgtctgca ctagctccgt cgtgatgcgg acgacctcgt cctccttctc
      241 cggcgcgggc cgtcgcggct gctgccgcgc ttgagctgaa gcatagggga agaggccgag
      301 cgtgacggcc aagaacaggc agcgtagtct ggtgtcgcac ttcgagagca ttcgggcgag
      361 cctccaatct taccttcggg ccgtcacctt aacatacgtg ctccgctgcc ataaagatgt
      421 tgccgtcgcc tgcgcccgtc tggtgtcact caggacgggg cttgacgagc agcgttcccg
      481 cggcctggct catgctatta gtcttgcagg gggattgtgc gcctcgccgt cccgtgatat
      541 aagccgcgcg aaagctctgg acgttacgat gaaagctacc gctcaccgtt tatgaaatct
      601 attgacccgg acgcggcggc ggaggccgcc gagacgcgcc tcgcgcccgc gcggcgcgcg
      661 gctctaatac aggcggcgcg cgccagagtg agcgccggga ggcgccagtc ggagtcggtc
      721 acgctggcct gcgccgtctc tctggccgtc atcctcggcg tcgcctgcgg tatgtggatt
      781 accagcctcg cgtcggccgc ctccgtgtcg cgcgcaaggc cgatccaacc gccgaccccg
      841 attcaggagg aggcgatgca cgcttcggcg ccgccgggcg cgacggagcc ccgaccgggc
      901 aattctgccg acgccacgcg ggacggcgac gaggcgccgc ccttaaccga gccggttgag
      961 aggccgggcg cggaggctcc gcgaacgagg cccgccgtgg cgacaggcgc gaggggcgaa
     1021 gggagtcacg cggaggccga gccgaccgaa acctccgaga gaatcgtggg cgcgccggag
     1081 gccgggaaga aggccgcgtc gaggcggggg gtggcgtccc cttgcgccct ttacgcgagc
     1141 gccagttcac tcaccgtccg aagcggcggc gcgaccagtc tcgtcctggg cgggccgggc
     1201 gaggcggggc gcgtcagcgt cacaaccccg gactggtcga acatcgcggt gttttccgag
     1261 gggcgggccg gcggcaaggg gtgggtgcgg tactccgtgc gctctgtaag taaaagggcc
     1321 ggcacctaca gggtgcgctt cacgacgccc tgcggcacac aaacaatccc ggtcacggta
     1381 actcggcagt agggtgagat tcctgagcgc ggccagggag ccagcggaaa gtaccgcccg
     1441 gcactactcc gcaacgcctt aagctcactg gcccaatagc gtcgtgttgc cctccgtcac
     1501 actcggcggc tgggctatct cggaagtgcg cccgccctgc cgtccgaaga ggggcgcggg
     1561 gatgaactgc ggcgcgccca gcgcgtgcgt ctcgccgccg cccttcaggc ccccgcccgc
     1621 ggtgaatcgg tgcgagtcta tcagttcttc cccgaacagc cgcgcgtaaa tcagccacac
     1681 aaggccggtc aggaagaccg tgagcggcac gaaaagcggc acgggcgagt tgatgaggaa
     1741 gcacaggccg aagaagatcg ggaacagcac gacgctaaag aacatcatct tcgcgccgcg
     1801 gcgcgtggcc gcgcgcttcg gcgactgcgc ggggccgtgg taagtgtaca gggcggcggc
     1861 ggccgcggtg ttatcgcccg ccagcagggc cgagtggatt gttagggcga ggccgcacct
     1921 cgggcagaag cgggcttcgc cggacggttg ttgctgaccg cattgtgggc aaaacatctg
     1981 gatcaccttt gacgagtggc gttagggctc acgtcgggat tacgcccgcg ggagcgctta
     2041 agttctggcc gaaatgatag tatgtgcagt cgccctctcg gcccgacgtg aggggggcgg
     2101 cgcacgttca gcgtttttct caaaccgatg tcgaataaga aaggagtcag gatgaagaca
     2161 acgagaggtg gcctgacact ccccttcggg attttactac tcgccgccat cgcgtgtaac
     2221 ttcagcgcct cgacggccaa catcagcgac cttaaactcg gcaaaaaccc aaccgccagc
     2281 cccgagacta acagcttcgg cgcgagcgac acggtttacg cggtcgcgac catttccaac
     2341 gccccgggcg cggtaaaggt gacggggcgc cttgtgatcg cggacgttga gggtgagcag
     2401 agcgggccca taccgggcct cgagaagacg cttgacctgc cgggcagcgc cacggctact
     2461 ttcactttca cgccaccgcc ggccggtttc ccgaagggga aatacaaggt cgaagtcctg
     2521 atgctgaacg aagccggcga gcagaaggat caaaagacgg ccgagttcac tgtctcctga
     2581 ccccgcgttt ttgttggcag agcgacgcgc ccgcgtaggc gatgacgcca atcgcgatca
     2641 cagtgaggcg ccggataaac tgtcctccgc atgaagcccc agttctcctc gcatagcgta
     2701 aacccgctca ctgttcgaga gccctcctca aggccgccct cgcgagcagc cgcgtcgagt
     2761 ccagtgtcgg cagaggcgtg tcgtccggcc gcacgattaa aggtagctcg gtgcagccga
     2821 ggacgacggc gtcgcagccg cgcgccttga gcttgcccgc cacctcgttt aagtacagcc
     2881 gggaggcttc ggggaagatg ccgttgacca gctccttgaa gatgatctcg tttacccttt
     2941 ccctgtcggc agcgtcgggt atctcactct ctatcccgag ccccccgagc gcctcgggat
     3001 agacgggccc ttccgtcagg tacttcgtcc ccatgacgcc gagccgggcc tagcccaggc
     3061 ggcgcgcctc ctcggcgacc acctccgcta tgtgcaccca cggtatcggg gagcgcccgt
     3121 cgaagtgcct gaaagcctga tggtacgtgt tgtccgggca gatggcgaag tcggccccgg
     3181 cgcgcgcgac cttacgcgcg gaggccaaca tcagttcggc caccgactcc cagtcgcccg
     3241 cgctgatgtg gggcatgtgc tcggccatcg gcatcgagtt catggttatc tcggggtggt
     3301 tgtgctcgcc catgaaggcg ggcgcctcag cgcagatggt gcggtaacag agggcggcgc
     3361 cctcggcgct gcccgccacg atgccgatgt gccttgtcat atcttcttcg cctcctcttc
     3421 cccgcccaca cttttacacc ggggaggtct gaccgcgcca cccctctctg gcggcggcta
     3481 tcagcccgaa gagcgcccag acgtgccggg cgtcctcgaa agacccgacg agcccttcgt
     3541 aaaaaaaggc gccgaccaga ccgagcatga ggtacgtctt gggcgcgcgg ccggagtgac
     3601 tgccccccga cagaagaaat acgagtatgc cgccgaaggt gacgagcccc acgaggccgg
     3661 tctcgccggc cacgctgagg taagtgttgt gcgcgtccgt gagccgcacg cgatgaccgc
     3721 tgaagtctat gaagcccgcg gaggaaacct ccgtcccgac gccgcgcccg aagacggggt
     3781 gttgcttgaa cgtctcgaag gcggtctgcc acgcctccgc gcggtgtgaa ggctcgacgc
     3841 gcccgcgaac tagaggcacc tcggcgccct ccgggccgaa agagaacaac accagggccg
     3901 ccgcggcgaa gaaggccagt gcggccgcgc agccccacgc gacggccaac ttaccccagc
     3961 cgcggcgccc cgtgcggtta aggcggcgcc ccagccacag ccccgtgatg agcgcaaggc
     4021 cgcctatccc cggcgtcagc gtgaacgcgg cggcgaccca tatgccgacg atgaggggcc
     4081 gggcccatcg agcactaagc cagcccgccg acaacattac gagcgccacg gcgaaactca
     4141 cgtcgaggta gttgcacagc atggcggcgt actcgaaaaa cccgtcaacg cgggggtaat
     4201 gcccgtgggg caggctgccg tagctgtgga gcgcgaagtt gtacggccct ctaaagccgg
     4261 cgtagaaaag tacaatcccg gccaggcacg ccgccaccgt cagggcggtg ccgacgagcc
     4321 atgccccggc cgcgcggcgc atgagtgcgg gggatgtgac caggttgaag gtgagcgccg
     4381 ctatcgagat tagatagacc ttgcccgcca gcttgacggc gctccgcgcc ggctcctccg
     4441 aggccgcggc cgagcagatg gccgccgcga ggtagagggc cagcggcaga taaaaccagc
     4501 tccggcgaag gcgagccttc cctctggcga ggccgacgag ccacgccacg gcggccccgg
     4561 cgaagagggc gtcgcccggc gcgacgacca ggccgtagaa tttgacgcgc aaggggtaga
     4621 ggacggggag aaatacgagg aaggcaaggt aaaggtactc gtccgcgcgc aaacgctcgg
     4681 gccggtcgtt ccccatgccg ttcgtgtctt cggtgctgac catcaacgcg ctttttatgc
     4741 cttcctgatc ggccgtggtc gcgacgggcc gggatgctac aatggccgtc acactatgag
     4801 cgcacaggta gcggccgttt tcgccctcac cttcgccata cacatgaccg gcacgctctc
     4861 ctacgcgctg aggctggcgg gggtgagcac cgggcgcatt gccgtcgcct tctccctgac
     4921 gaacctgctg ctgctcgtct cccggacttc taacactttc caggcgcccc tgctcgccaa
     4981 gcacgtcgag ggcaacatac tgcgcggcac gctcggcgac gccgagtggg acttccgcgt
     5041 gctgatgctg gccgggacgc tggcgaccgt ggtcggcggc ctgctgctcc cgacggcgca
     5101 gaccctcttc gccgacgcaa tcgttgcgtt cgggcgccac cgctcgatac cgcgccttgt
     5161 gctgcgcgcc ctgacgcccg tcgggctgcg ccacgcggcg ggcgcgctcc gcgcgccgtc
     5221 gtggcggggc gtggcgggcg cgcgcctgac aggcacgccg ctcaggatgg ccgtcttcaa
     5281 cgcgctcgcc acggcgctcc tcaccgtcaa cgtcttcgcg tcgctctacg ccggctgcct
     5341 gagcccggag ctgcggctga cggcgaacaa cctctcgccg attgtcaacg gcctttcgac
     5401 tatactgctt ttcgtctata ttgacccgta tctttcggta ctgaccgacg acgtgctggc
     5461 cggcagggag ggcgagtcgt tcttcaggaa gtgcgtggtg cttttcgtct gcgcccggct
     5521 ggcggggacg ctgctggccc agctcctcct gctcccagcc gcccagggaa tcataatcat
     5581 ctcgaagctt ttataaagtc tttcgtaatg agctcgaacg tgcctgggga cggggcttcg
     5641 gcggcggcgc gcgacgcgcc cgctgtcagc gtcgtgatgc cggtccacaa cgcgcggccc
     5701 tacctggacg agagcgtggg cagcatcctc gggcagacgc tccaggactt cgagctcgtc
     5761 atactcgacg acgcctcgac cgacggcact gccgaggcgc tgcgccggtg ggcggcggcc
     5821 gacgcgcgca tacgcctgtt cgagtcgccc ggcaagctcg gcctctcggg cagctccaac
     5881 ttcgtcgtcc gccgtgcgcg cgcgccgctc gtcgcgcgca tggacgccga cgacatagcg
     5941 caccccgaga ggctcgcgcg ccagcgcgag gtcttcctgc gcagccccga ggtcgtgctc
     6001 gtcggcgcgc tctgcgtggg gatagactcg cgcgggcgtc gcgtccggcc ccgagaccgc
     6061 tggcggctgg cgcgcccgtc gctcttcccg cccttcccgc acagctctgt gatgttccgc
     6121 aggcgcgcct tcgaggaggc gggcggctac cgcgaggagt gcgcgcactg ggaggatcag
     6181 gacctgtttt tgaggatgac gcggcgcggc cgcgtcgtcg tgctgccgga ggcgttagtc
     6241 cgctaccgct accacgcgtc gaactcgacg ggcgtcgcgc ccgaccacaa cgcgcgcgtc
     6301 tatagcctgc gcgcccgctg cctcgaggag ttccgcgccg ggcgcgacta cgccccgctg
     6361 ctcgcgtctt gctctctgaa cgggtcgtcg cccgtggcgc gcgccgaggc gctctaccag
     6421 gcgggcgcga tgcgcctctg ggccgggcgc gcgccggaaa ttctcgggcc ggtgttaagc
     6481 ggcggcccgc tcggccgcag cccgcgcgcc ttgctcacgt acctgatggc ggtgtggggc
     6541 gcggccagcc ccgcgagcct gcggcacgcc ctgcgctact ttatacgcgc ccgcgatgtc
     6601 ctcgccgggc ggcgcgtcaa ggacgggggg aggtacgatt ggcgtttaga gtgatcgtcg
     6661 cagggctcgg cagccgcggg cgcgagtggc tgcgcgagat cggccgcgac gaaagtttcg
     6721 agcttgcggg gtgcgtggac gttgacgagg cggcgctcgc gggcgcgtcg tccgattcgg
     6781 gcctgccgcg gcggagttgc ttccgcgacc ttggcgaggc gctccgaaat gtcgaatgcg
     6841 acgccgtcgt cgtcgcaacg cccgccgact ctcacaccga ggcgtgtgag gcggcgctct
     6901 cgcgcgggcg cgcagtcatg gtcgaaaagc ccttcacgac tcggctcgcc gacgccgtca
     6961 ggctggtcgc gctggcggag cggcagcgcg ccccgctcct cgtcgcccaa aactaccgtt
     7021 acatgcgcgc cttccgcgcg gcgcggcggc tggtaagcga aggcgcgctg gggcgcgtgg
     7081 gcgcaatcgt ctgccagtac ttccgcgtgc ctcaccgtat gcggccgtcg ctcgctagca
     7141 tggagcacag cgcgctctgg ggcgtaggcg tccaccacct cgacgtgctg cggcacgtca
     7201 cgggccgcga ggtcacgggc gtcgcggccg agagctacac gcagccgtgg ggcgagctgc
     7261 cgcgcggcgg ctcgctccgc gccatgctga cgttcgaggg gggcgcgcgc gccttctact
     7321 cggccacata cgagtcgagc ggccacgagt atttcgaggg cgggcaggag ttctacatgc
     7381 gcctgacggg cgagcgcgcg acgctccacg tcttccaccg ctggctggtg ctgtgcgagc
     7441 gcgggcgctg gccgcgcctc gtgcggcgcg ggcgccgagc ggagaccgag gagcgaacgc
     7501 ttctgcgcca gctcgcgggc gcgctcgcgc ggggcgaggc gccggaggtg agcggtcgcg
     7561 acaaccttca gacgatggcc gtggcggagg cgtgcgtcag gtctgcgacg tgcggcgggt
     7621 gggtgagccc gcaggagctt ctgcttgact gcgcgggaga aaaggatgca ccggggcaaa
     7681 gatagattcg tgctggcaat cggcattgac gccgcggagc cttcgctcgt ccgaagcctc
     7741 atcgggcgcg gcgagatgcc cgcgctccgc ggtcttctgg gtgagggggc ttggcttagg
     7801 gtcgaatcgc ccgcgcgcgt cggcagcggc tccgtgtggc cgaccttcat caccggctcg
     7861 gggccggccg agcacggcgc ctacggcgag tggtgctggc gccccgagac gatgggactg
     7921 gagcgctaca gcggccgcgg gctcaagccc ttctgggagg cgctggcgcg cgagggcatg
     7981 accgtcggcg tgctcgacgt gcctttcatg ccgctgctcg ggctgacgga agggttcgaa
     8041 atctccgagt ggggcgcgca cgacgtgctc gacggccggc tcgtcttctc gcccgcccgt
     8101 ctcgcgccgc tcgtcactaa cggctcggcg cgccacccgc tctcgcgcga ccggctcgac
     8161 gcggcggggc ctgacgatta cgagtcgctc aagaaggtcg cggccgggtg cctggagggc
     8221 gcgcggctga ggggcgagct cgccctgcgg ctcgtgcgcg aggcgcgccc gcagctcgcg
     8281 ctcgtcgcct tcacagaagt tcaccacgcc gcgcactacc tctggcacac cctcgcgccc
     8341 ggcgacccga tttacggcga ggggctcaag ggcctgcgcg ccgtcgctcc aacgctcgaa
     8401 gacatctaca gggaagttga ccgccagatc gggcggctcg tcttggcagc gcccgcgggc
     8461 gcgaccgtgc tggtcttctc gctccacggg atgcggccga cccgcggcat cccctctttc
     8521 ctcgcgccgc tgctgtgcga gagcggcttc gcgcgcctcg cggggtgggg cgcgcagact
     8581 tggcgcgggc gcgcggtctc ggcgttggcg gccgtaaagc ggggcatgcc ggccccggtc
     8641 aagagactct actaccgtgc gatgccgcag actgcggcgc agcggctggc gaagccgacg
     8701 atgctgccgt cttacgactg gtcgcaaacg cgcgccttcg cgctgcccac cgaccagcac
     8761 ggatgggtgc gcatcaacct cgaagggcgc gagtcgtcag gcgtagtgcc gcccgcgctc
     8821 tacgacgcga cctgccgcga ggtcgaggcg ctactgcgct cgctcgtgac ggagcagggc
     8881 cgcccgctcg cgcgcgaagt catacggacg gccgcgagtg ccgaggacgc catcggcctg
     8941 cggctgcccg acatcgtcat ccactggcac gacgcggccc acgagacccc gctccgaatc
     9001 aaaggccgcg cggccgaggc gcccgccgca gtcgggctaa agttcacggg ccagcacgcg
     9061 ctcgacggct tctgcatcac gaacgcgcga ggcgcggccg gcgccgacag cgtgcgcgcc
     9121 gaagacctac acctacagat tctcgacgcc ctgtcggccg ccccgcgcac ggagggggcg
     9181 cgcgaccggc tttaccccgc gagccgcccg gtggtataag tcgcgccact atggctgaca
     9241 aagacgacag gtcgagagct tacgtcgtca tcgcgctggt gggtgagggc gacaagaaga
     9301 agtatcaggg ctgtaaggtg atcccgcacg gcgagcccta cccggccatc tactaccagg
     9361 tcttcgggcc ggcgagtcaa cgcgagtgcg agaagtgggt ggccgccaac tgcgccaagt
     9421 gagcggcgtc gcccgccgtg cgagggcggc ggccctcacc ccgttcaggg ccgcggtgtg
     9481 aaggccgcgg cggcctcccc cgaagtgacg acggggacga tctcgaactc gacgaggtct
     9541 tgccagcggg ccgtcc
//
LOCUS       DASPKR010000710         7760 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1931907, whole genome shotgun sequence.
ACCESSION   DASPKR010000710 DASPKR010000000
VERSION     DASPKR010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7760)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7760
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1931907"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..694
                     /locus_tag="VD968_18670"
     CDS             <1..694
                     /locus_tag="VD968_18670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16469.1"
                     /translation="VGGRNEVAAFDSREGAALWRSRHNPPGRGVFRTVAAVAARAASL
                     YFRYGGAATTVFRGARLVSAARSLRWSGLAAHATLPDLASLAADRSRDYAASRFSAFG
                     ALSRPRNVSAPRGPNIPRPSVDVEDRLLDRLDPSTQLERLSRFLWRQRRLAALRGQWM
                     YFYTDFRGAGRGLVGVNVNGGDASRYVRLSDPDERFISDEAAGLLFTARDNRLLAYDL
                     NAPLAARGAGGS"
     gene            complement(672..2117)
                     /locus_tag="VD968_18675"
     CDS             complement(672..2117)
                     /locus_tag="VD968_18675"
                     /inference="COORDINATES: protein motif:HMM:NF013442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16470.1"
                     /translation="MRRTLNEDSTREVFERLSAANQGFAARYPGEGQRRQPVHTVYGG
                     AHLFKSDSARRLGALALRSLDAFAPDFASFARAVGLPGSEELPPSVADDSAVRSLLET
                     DAGALRREQKPLWLAHTIYTRVVEKLRREPVEDFRIDFEDGYGNRPDAEEDGHAESAA
                     AEVAAGLDAGTLPPFIGIRIKPFNEELHARSARTLDIFLTTLVGRAGGRLPENFFVTL
                     PKVTVPEQVAALADLFDTLEPALGLAAGTLKMEMMIETTQSVINHLGESNLPLLLEAA
                     RGRCVAAHFGTYDYTASCQITAAHQHMLHPACDFARHMMQVAFGGTGVWLSDGATNVM
                     PVAPHRAAEGQSLTREQEEENRQTVHRAWRLHYEHIQHSLTNAYYQGWDLHPAQLPTR
                     YAAVYSFFLESLDAASERLSNFVEKAARATLVGDVFDDAATGQGLLNYFLRAVNCGAV
                     TEAEATRLTGLTTDELRSGSFVKILKNRQHL"
     gene            2333..3061
                     /locus_tag="VD968_18680"
     CDS             2333..3061
                     /locus_tag="VD968_18680"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE16471.1"
                     /translation="MSSYERTYNFPAPSQLWWGALDFLRLMLSPVFYMVEGAAYGLQR
                     RWRRERRRRAVGRSYDMALEIARSMPRRSRVLDVGCGSGYIAQHLAGLLGASVVGLDV
                     RKSADAPIEYVRFDGKRLPVPGSSFDAVLLCYVLHHAQEQRAFLTEVRRALRDGGVAV
                     VYEDIPASPWDRAVCFSHERSWRGRTGPCTFRLGDDWRGLFRSCGFEVTAERPLSRWR
                     NLAHPVSRRLFVLRAAGPARENKA"
     gene            3096..4469
                     /gene="allB"
                     /locus_tag="VD968_18685"
     CDS             3096..4469
                     /gene="allB"
                     /locus_tag="VD968_18685"
                     /EC_number="3.5.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR03178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004038 - allantoinase activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0050897 - cobalt ion binding [Evidence
                     IEA];
                     GO_process: GO:0000256 - allantoin catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="allantoinase AllB"
                     /protein_id="HYE16472.1"
                     /translation="MPPPELAVRGRRVVTNNSVGPASIHVSGGRITAVADYDEVPPGC
                     PVYDAGGRVVMAGLVDSHVHVNEPGRTHWEGFESATRAAAAGGVTTIVDMPLNSVPPT
                     TTAEGLRRKLEAARGRCGVDVGFWGGVVPGNLEELPGLFDAGVVGFKCFLIHSGVEEF
                     PHVTESELRPAMKGLARMGAPLIAHAELPGPVEEALAACCAAGADGADPRRYDTFLRS
                     RPREAEDAAIALLVRLCRETGARTHVVHHSSADSLQLIERAKSEGLPFTAETCPHYLA
                     FAAEDVPDGATEFKCCPPVRERENNERLWGALAEGVIDMVVSDHSPCPPEMKCRGEGD
                     FLRAWGGISSLQLRLPVVWEHARRRGHTHAQLARWLAEAPAELTGFGGRKGRIAPGYD
                     ADLVVWDDEATFRVEPALLHHRHKLTPYEGQTLAGVVEATFLRGEKIYERGGPAGEPR
                     GELLRRS"
     gene            4466..5482
                     /gene="alc"
                     /locus_tag="VD968_18690"
     CDS             4466..5482
                     /gene="alc"
                     /locus_tag="VD968_18690"
                     /EC_number="3.5.3.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR02961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004037 - allantoicase activity [Evidence
                     IEA];
                     GO_process: GO:0000256 - allantoin catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="allantoicase"
                     /protein_id="HYE16473.1"
                     /translation="MTTKDFTGLVDLAAERVGGAVLYANDDFFAPKENLLKASAPVFV
                     EGKYTERGKWMDGWESRRRRTPGFDWCLIRLGLPGRVLGVVVDTAFFRGNFPESCSLE
                     ACAMEGTPDVERLTSEAAGWTEILPQSKLQGDSQNTFAVEAGGRFTHLRFKIYPDGGV
                     ARLRVYGEVLPDWARVAHAGGLVDLAAVEHGGLVVATSDEFFGHRHNLIMPGRALDMS
                     DGWETKRRRGPGHDWAVIRLGAPGRVERAEVDTAHFKGNFPESCSLEACDAGDGNDAD
                     TDALSRLPWRELLPRTRLQAHTRHFYEGEMSDAGRATHVRFNIFPDGGVSRLRLYGRI
                     SAAV"
     gene            5497..6009
                     /gene="uraD"
                     /locus_tag="VD968_18695"
     CDS             5497..6009
                     /gene="uraD"
                     /locus_tag="VD968_18695"
                     /EC_number="4.1.1.97"
                     /inference="COORDINATES: protein motif:HMM:TIGR03180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
                     decarboxylase"
                     /protein_id="HYE16474.1"
                     /translation="MEAALSRINSLPAEEAAAELLKCCGSARWAARVAAARPFGDSHE
                     LHETAERVWWEMGAEDWLEAIRAHPKIGERKAQARVSEEASRWSEGEQSGARAARPEV
                     LDALAEANRAYEEKFGHIFIVCATGKTAGEMLALLRERMANEPGDELRVAALEQSRIT
                     RLRLEKLLSE"
     gene            6006..6347
                     /gene="uraH"
                     /locus_tag="VD968_18700"
     CDS             6006..6347
                     /gene="uraH"
                     /locus_tag="VD968_18700"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR02962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HYE16475.1"
                     /translation="MSGITTHVLDTSLGRPAAGVPVTLEFKARDGWRVLGRGLTDTDG
                     RLRDLLPAGHPLEEGRYRLTFDTGSYFGARGVQVFYADVIVAFVVRDGAEHYHVPLLL
                     SPFGYSTYRGS"
     gene            6351..7241
                     /locus_tag="VD968_18705"
     CDS             6351..7241
                     /locus_tag="VD968_18705"
                     /inference="COORDINATES: protein motif:HMM:NF017945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate hydroxylase PuuD"
                     /protein_id="HYE16476.1"
                     /translation="MRIPPYISEWLNLAARWFHVFAGILWVGTTFFFTWLDGRFTEEE
                     KKAGGKGEPGEVWMVHSGGFYVVGKRKQPGQRELHWFRWEAALTWLSGVVLLVLLYYI
                     GGESTLADTDVKTGFVRWLDGLPGQWLWSRLNLAANYGTFALCFGVGLLIVGWLIYDL
                     LLLSPLGRNEWAFAAVAYLLVVCAAFASTHVLTGRAAFLHVGAMFGTIMVSNVWMRIL
                     PAQRRMIAATKRGEAPDASDAARAKLRSKHNTFMAVPVVFTMISNHYPVSTYGHEHNW
                     LILSALVLVGWAAAKIIRRA"
     gene            7253..>7760
                     /locus_tag="VD968_18710"
     CDS             7253..>7760
                     /locus_tag="VD968_18710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16477.1"
                     /translation="MSSIDLTEEPGGGEGWDEFFGRAAEESFDRFLRGGKVRVRYKNW
                     RITLDTVAIAAGEACVTVTRMKAPYINLDGFRFRAHSKDFLSALWKFCGARSVEVGRP
                     ALDRAFVFHGEDERKVRELFSGPEVERLMLAQPAVNLEVRDDEGVLGVEFPEGVDELC
                     FREAGFIND"
BASE COUNT         1131 a         2676 c         2697 g         1256 t
ORIGIN      
        1 cgtcggcggc aggaacgagg tcgcggcctt cgactcgcgc gagggagccg cgctctggcg
       61 ctcgcgccac aacccgccgg gccgcggcgt cttccgcacg gtcgcggccg tcgccgcccg
      121 cgccgcctcg ctctacttcc gctacggcgg cgcggctacg accgtcttcc gcggcgcccg
      181 cctcgtctcg gcggcgcgct cgcttcgctg gtctggcctc gccgcgcacg cgaccctccc
      241 tgacctcgcg agcctcgccg ccgaccgctc tcgcgactac gcagcctcgc gcttctccgc
      301 cttcggcgcc ctctcccgcc cgcgcaacgt ctccgcgccg cgcggcccta acatcccgcg
      361 cccctcggtt gacgttgaag accgcctgct cgaccgcctg gacccttcga cgcagttgga
      421 gcgcctctcg cgcttcctct ggcggcagcg caggctcgcg gcgctgcgcg gtcagtggat
      481 gtatttctac actgatttcc gcggcgccgg gcgcggcctc gtcggcgtga acgtcaacgg
      541 cggagacgcc tcgcgctacg tccgcctctc cgaccccgac gagcgcttca tcagcgacga
      601 ggccgccggc ctcctcttca ccgcaagaga caaccgactg ctcgcatacg acctgaacgc
      661 acctctagcg gctagaggtg ctggcggttc ttgagaatct tgacgaagga gccggagcgc
      721 agctcgtccg tggtgaggcc ggtgaggcgc gtggcctcag cttcggtcac ggcgccgcag
      781 ttcacggcgc gcaggaagta gttaaggagg ccctgccccg tggcggcgtc gtcgaacacg
      841 tcgccgacga gcgtggcgcg ggcggccttc tcgacgaagt tactcagccg ctcggacgcg
      901 gcgtccagac tttcgaggaa gaacgaatag acggcggcgt agcgcgtcgg gagttgggca
      961 gggtgcaggt cccagccctg gtagtaggcg ttcgtgagcg agtgctgtat gtgctcgtag
     1021 tgcagccgcc aggcgcggtg gacggtctga cggttctcct cctcctgctc gcgcgtgagg
     1081 gactggccct cggcggctcg gtgcggcgcg accggcatga cgttggtcgc gccgtccgag
     1141 agccagacgc ccgttccgcc gaaggcgacc tgcatcatgt ggcgcgcgaa gtcgcacgcg
     1201 gggtggagca tgtgctggtg cgcggccgtt atctggcagc tcgccgtgta gtcgtatgtg
     1261 ccgaagtggg cggcgacaca ccggccgcgc gcggcttcga gcagcagcgg cagattcgac
     1321 tcgccgaggt ggttgatgac ggactgcgtg gtctcgatca tcatttccat cttgagcgtg
     1381 ccggcggcga gcccgagcgc cggctccaac gtgtcgaaca ggtctgcgag cgccgcgacc
     1441 tgctcaggca cggtcacttt cggcagcgtg acgaagaagt tctcgggcag gcgcccgccc
     1501 gcgcgcccga cgagcgtggt caggaagatg tcgagcgtgc gcgcgctgcg cgcgtgaagc
     1561 tcttcgttga agggcttgat gcgtatgcct atgaagggcg ggagcgtgcc ggcgtcgagg
     1621 cccgcggcga cctcggccgc ggccgactcg gcgtggccgt cctcttccgc gtcggggcgg
     1681 ttgccgtagc cgtcctcgaa gtctattcgg aagtcctcga ccggctcgcg cctgagcttc
     1741 tcgacgacgc gcgtgtagat ggtgtgcgcg agccagaggg gtttttgctc gcgcctgagc
     1801 gccccggcgt cagtctcaag gagcgagcgc acggccgagt cgtcggccac cgaggggggc
     1861 agctcttccg agccggggag gcccacggcg cgcgcgaacg aggcgaagtc gggcgcgaaa
     1921 gcgtcgagcg agcgcagcgc taaagcgccg agcctgcgcg ccgagtcgga cttgaagaga
     1981 tgcgcgccgc cgtaaacggt gtgcacgggc tggcgccgct ggccctcgcc ggggtagcgc
     2041 gcggcgaagc cctggttggc ggcgctcagc cgctcgaaaa cctctcgcgt cgaatcttcg
     2101 ttcagcgttc ttctcatggc cgctcttcaa tagcaccccg cagccggaaa ctgcaaacgc
     2161 ccgcggggcg cgcagcaata acatttcaac tggtgcctcg ccccgcttgc gcgcgggcga
     2221 cggcctcccg cgccgccacg cgtttagggc ttcgcggctc tggcccgctg cttgccgttg
     2281 ccccgtggcg tcgggtttga agcgctgatc tgcggaggcg atacgacgag ccatgtcttc
     2341 atacgagcgc acgtacaact tccctgcccc gtcccagctc tggtggggcg cgctcgattt
     2401 cctgcggctt atgctgagcc ccgtcttcta catggtcgag ggcgcggcct acggtctgca
     2461 aaggcgctgg cggcgcgagc gaaggcggcg cgctgtgggg cgctcttacg acatggcgct
     2521 tgagatcgcg cgctccatgc cgcgccgctc gcgcgtgctc gacgttggct gcgggagcgg
     2581 ctacatcgcg cagcacctcg ccggccttct cggcgcctct gtcgtcggcc tcgacgttcg
     2641 gaagagcgcc gacgcgccca tcgagtacgt gcgcttcgac ggcaagcgcc tccccgtccc
     2701 gggctcatcc ttcgacgccg tgctgctctg ctacgtcctc caccacgcgc aggagcagcg
     2761 ggcgttccta acggaagtgc gccgcgcgct ccgcgacggg ggcgtggccg tcgtctatga
     2821 agacatcccc gcgagcccct gggatcgagc cgtctgcttc tcgcacgaac gctcgtggcg
     2881 cgggcgcacg gggccttgca ccttccgcct cggggacgac tggcgcgggc tgttccgctc
     2941 ctgcggcttc gaggtcacag ccgagcgccc gctctcgcgc tggcgcaacc tcgctcaccc
     3001 ggtcagccgc aggctgtttg tgctcagggc cgccggcccg gcgcgcgaaa acaaagcttg
     3061 acctgaaagc tcccgccgtg ttttaagttc cctccatgcc tcctcccgag ctggccgtgc
     3121 gtggccggcg cgtagtcacg aacaactccg tcggcccggc ctcgattcac gtaagcgggg
     3181 gccgcatcac ggccgtcgcg gattacgacg aagtgccgcc gggctgtccc gtctatgacg
     3241 caggcgggcg cgtcgtgatg gccgggctcg ttgactcgca cgtccacgtg aacgagccgg
     3301 gccgcaccca ctgggagggc ttcgagagcg cgacgcgcgc ggccgccgcg ggcggggtca
     3361 cgacgattgt tgacatgccg ctcaacagcg tcccgcccac cacgaccgcc gaaggcttac
     3421 gacggaagct cgaagcggcg cgcgggcgtt gcggcgttga cgtgggcttc tggggcggcg
     3481 tcgtgccggg caatttagaa gagctgccgg ggctgtttga cgcgggcgtc gtcggcttca
     3541 agtgcttcct gattcactcg ggcgtcgaag agttcccgca cgtgaccgaa agcgagctgc
     3601 ggcctgcgat gaagggactg gcccgcatgg gcgcgcccct catcgcgcac gcggagcttc
     3661 cggggcctgt ggaagaagcg ctcgccgcct gctgcgcggc cggcgccgac ggggccgacc
     3721 cgcggcgcta cgacacgttc cttcgctcgc gcccgcgcga ggccgaggac gccgccatcg
     3781 ccctgctcgt ccgactctgc cgcgagacgg gggcgcgcac gcacgtcgtg catcactcgt
     3841 cggccgactc gcttcagctc atcgagcgcg cgaagtcgga aggcttgccc ttcacggccg
     3901 agacctgccc gcactacctc gccttcgcgg ccgaggacgt gccggacggc gcgaccgagt
     3961 tcaagtgctg cccgcccgtg cgcgagcgcg agaataacga acgactttgg ggcgccctcg
     4021 ccgaaggcgt cattgacatg gtcgtctcag accactcgcc ctgcccgccc gagatgaagt
     4081 gccggggcga gggcgacttc ctgcgcgcgt ggggcggcat ctcttcgttg cagttgaggc
     4141 tgccggtcgt gtgggagcac gcgcgacgcc gcggccacac gcacgcgcag ctcgcgcgct
     4201 ggctcgccga ggcccccgcc gagcttacgg gcttcggcgg ccgcaagggg cgcatcgccc
     4261 ccggctacga cgcagacctc gtcgtctggg acgacgaggc gaccttccgc gtcgagcccg
     4321 cgctccttca tcaccggcac aagctcacgc cctacgaggg gcagacgcta gcgggagtgg
     4381 tcgaggcgac cttcctgcgc ggcgagaaga tttacgagcg cggcgggccg gcgggcgagc
     4441 cccgcggcga gttgctcaga cgttcatgac gacaaaggat tttacagggc tcgttgacct
     4501 cgccgccgag cgcgtgggcg gcgccgtcct ctacgccaac gatgacttct tcgcgccgaa
     4561 ggagaatcta ctgaaggcga gcgcgcccgt cttcgtcgag ggcaagtaca cggagcgcgg
     4621 caagtggatg gacgggtggg agtcgcgccg ccgccgcacg cccggcttcg actggtgcct
     4681 gatacgtttg ggccttccgg gccgcgtgct cggcgtggtc gttgacaccg cgttcttccg
     4741 cggcaacttc cccgagagct gctcgctcga agcctgcgcg atggaaggca cgcccgacgt
     4801 cgagcggttg acgagtgagg cggccgggtg gacggagatt ctcccgcagt cgaagcttca
     4861 gggcgactcg cagaacacgt tcgccgtcga ggccgggggg cgattcacgc acctgagatt
     4921 taagatttac ccggacgggg gcgtcgcgcg cctgcgcgtt tacggcgaag tcttgccgga
     4981 ctgggcgcgg gtagcgcacg ccgggggcct ggttgacctc gcggccgtcg agcacggagg
     5041 gctcgtcgtc gccactagcg acgagttctt cggccaccgc cacaacctca taatgcccgg
     5101 ccgtgcgctc gacatgagcg acgggtggga gacgaagcgg cgccgcggcc ccggccacga
     5161 ctgggccgtc atacggctcg gcgcgccggg ccgcgtcgag cgcgccgagg ttgacaccgc
     5221 ccacttcaag ggcaacttcc ccgagagctg ctcgctcgaa gcctgcgacg cgggcgacgg
     5281 caacgacgcc gacacagacg cgctctcccg cctgccgtgg cgcgagctcc tgccgcgcac
     5341 gcgcctgcag gcgcacacgc gccacttcta cgaaggggag atgagcgacg cggggcgcgc
     5401 gacgcacgtg cgcttcaaca tcttccccga cggcggcgtg agccggctgc gtctatacgg
     5461 cagaatctcc gcggccgtct gaaagacgcg atgaggatgg aagccgcgct gtcgagaatc
     5521 aattccctgc ccgccgaaga ggcggccgcg gagctcctca agtgctgcgg ctcggcccgc
     5581 tgggccgcgc gcgtcgccgc ggcccgcccc ttcggcgact cacacgagtt gcacgagacg
     5641 gccgagcgcg tctggtggga gatgggcgcc gaagactggc tcgaagccat ccgcgcgcac
     5701 ccgaagatcg gagagcgcaa ggcgcaggcg cgcgtgagcg aagaggcgag ccggtggtct
     5761 gagggcgagc agtcgggcgc ccgcgccgcc cggcccgaag tcctcgacgc gctcgcggag
     5821 gcgaaccgcg cgtacgagga gaagttcggc cacatcttca tcgtctgcgc gacgggcaag
     5881 acggccggag agatgctcgc gctccttcgc gagaggatgg cgaacgagcc gggcgacgag
     5941 ttgagggtcg cggctctcga acagtctcga atcacgaggc tgcggctcga aaaactttta
     6001 agcgaatgag cggcataacg acacacgtgc tcgacacctc gctcggccgc ccggccgccg
     6061 gcgtccccgt cacccttgag ttcaaggcgc gggacggctg gcgcgtgctc gggcgcgggc
     6121 tgaccgacac ggacgggcgc ttgcgggatt tacttcccgc cggccaccct ctcgaagagg
     6181 ggcgctaccg cctgaccttc gacacaggct cgtacttcgg cgcgcgcggc gtgcaggttt
     6241 tctacgccga tgtcatcgtc gccttcgtcg tgcgcgacgg cgcggagcac taccacgtgc
     6301 cgcttttgct cagccccttc ggctactcga cctatcgcgg gagctagacg atgcgcatcc
     6361 ccccgtacat cagcgaatgg ctgaacctcg ccgcgcgatg gttccacgtc ttcgccggaa
     6421 tactctgggt cggcacgacc ttcttcttca cgtggctcga cggccgcttc acggaggaag
     6481 agaagaaggc cggcggcaag ggcgagccgg gcgaagtctg gatggttcac agcggcggct
     6541 tctacgtcgt cggcaagcgc aagcagccgg gccagcgcga gctgcactgg ttccgctggg
     6601 aggcggcgct cacgtggctg agcggcgtgg tgctcctcgt gctgctctac tacatcggcg
     6661 gcgagagcac gctcgccgac accgacgtta agaccgggtt tgtgcgttgg ctcgacggcc
     6721 ttccggggca gtggctctgg tcgaggctca acctcgcggc caactacgga actttcgcgc
     6781 tctgcttcgg cgtggggctg ctaatcgtcg gatggttgat ttatgacctg ctgttgctct
     6841 cgccgctcgg ccgcaacgag tgggcgttcg cagcagtcgc atacctgctc gtcgtctgcg
     6901 ccgccttcgc ctcgacgcac gtgctcaccg ggcgggcggc gttcctccac gtcggcgcga
     6961 tgttcggcac aatcatggtc tcgaatgtgt ggatgaggat actgcccgcg cagcggcgca
     7021 tgattgccgc gacgaagcgg ggcgaggcgc ccgacgcctc ggacgccgcc cgcgccaagc
     7081 tccgctcgaa gcacaacacc ttcatggccg tccccgtcgt cttcacgatg ataagcaacc
     7141 actacccagt ctccacctac ggccacgagc ataactggct gattctctcg gcgctcgtgc
     7201 tcgtcggctg ggccgcggcg aagataatcc ggcgcgcgtg aagagtgtga cgatgagctc
     7261 gattgacctg accgaggagc cggggggcgg cgagggctgg gatgagttct tcgggcgcgc
     7321 ggccgaagag tccttcgacc gtttcctgcg cggcgggaag gtgcgcgtgc gctacaaaaa
     7381 ctggcgcatc acgctcgaca ccgtcgccat cgccgcgggc gaggcctgcg tcacggtcac
     7441 gcgcatgaag gcgccctaca taaacctcga tggcttccgc ttccgggctc acagcaaaga
     7501 cttcctgagc gccctctgga agttctgcgg cgcgcgctcg gtcgaggtcg gccggcccgc
     7561 gctcgaccgc gccttcgtct tccacggcga ggacgagcgc aaagtcaggg agcttttctc
     7621 cggcccggag gtcgagcggc tgatgctcgc gcagccggct gtcaacctcg aagtgcgcga
     7681 cgacgagggc gtgctcggag tcgagttccc cgagggcgtt gacgagcttt gcttccgcga
     7741 ggccggcttc atcaacgacc
//
LOCUS       DASPKR010000711         2797 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1932155, whole genome shotgun sequence.
ACCESSION   DASPKR010000711 DASPKR010000000
VERSION     DASPKR010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2797)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2797
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1932155"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..113
                     /locus_tag="VD968_18715"
     tRNA            32..113
                     /locus_tag="VD968_18715"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:66..68,aa:Leu,seq:gag)
     gene            231..1283
                     /locus_tag="VD968_18720"
     CDS             231..1283
                     /locus_tag="VD968_18720"
                     /inference="COORDINATES: protein motif:HMM:NF042824.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16478.1"
                     /translation="MSETDFGPEVRGIIERLAAVDLTDGRLDREGAEAGINLFLERLG
                     VAPKPVRWAEGPRGAESLVLGRRYPFASVEISSGLSRLARMRTMRARQMRSQELAVRE
                     ASAAYKWRAWTAVSRALSEPEIGPRSGEETYRRNRERNEVWTAARNAAYDASTAAGEL
                     ARLWEAGDGTPESRAFAVAKLPLLAAFEAGLFCYWVTRTEVFALRRPELYVDAEGRLH
                     ADGRAAVAWPDGARLYALHGVLVPAEIALTPGSELNPRLVVRERNVEVRRELVRKIGL
                     ERLLVALGAKSVDKRGDYELLMLDLGDGRARPFLKMRNPSVPVWHVEGVHPDCRTVAE
                     ALAWRNGTDVPPSVLT"
     gene            1307..1627
                     /locus_tag="VD968_18725"
     CDS             1307..1627
                     /locus_tag="VD968_18725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16479.1"
                     /translation="MPEDKKLVWYQQGDVTIKPVAEIPAGAAPKQGRVLREGEATGHA
                     HVATGEGVELFIHDGTLYMRAPSGARVVHEEHEAQEVPPGTYVIGAVREYDHFAEDVR
                     PVFD"
     gene            1718..>2797
                     /locus_tag="VD968_18730"
     CDS             1718..>2797
                     /locus_tag="VD968_18730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16480.1"
                     /translation="MRKRSPHVLEKSHTRLAFALLLLVAAEGAVVAQSGDVNFPSPIF
                     SNEVTGRIAPRDVGDPRRTRHFYTFRGVEGDLVVNLESSELLGAVDVFTATTSRPLIN
                     ITLLGGTQTRVVKSVYLRGEELLVLRVEARAAGDAEGSYKIRFEGAFAPAPAGLAEAP
                     AEPAPTVSNSERRGTRRVTSTGARIPEPPRPAEEAKAEPTPTPAATASGSTAEPAARA
                     PAPRRGGRGTTRTPTRRQPTRRAPPARPAQPEPTTGTAEAATTTEGATPADAKPGGEA
                     APTESPARPPRRRASSSRSSRRGSTPEAAPQPAPAPTQRLIIVTKDGETVERDMSTVR
                     RVTVENNQVVVVTRDGRTTRTPMSNV"
BASE COUNT          463 a          955 c          995 g          384 t
ORIGIN      
        1 agtctgctct taagtttgag taaccgtccg agcggaagtg gcggaactgg tagacgcgca
       61 cgtttgaggg gcgtgtgagg caactcgtgg gggttcgagt ccccccttcc gcatagcaag
      121 tcaggcgaaa cccccgcggg ccgcgaaagc ccgcgggggt tttctacacc gtatcgcccg
      181 ccatcaaacc cccttcaggc gcctcgacgg cgggcgcgca cacttagaca atgagtgaga
      241 cggacttcgg cccggaagtg cgcgggatca tcgagcggct cgcggcggtt gatctgaccg
      301 acgggcggct cgaccgcgag ggggccgagg ccgggataaa cctcttcctc gaaaggctcg
      361 gggtcgcgcc gaagcccgtg cgttgggcgg aggggccgcg cggggccgaa tcgctcgtgc
      421 tcggccgccg ttacccattc gcttccgttg agataagctc gggcctgagc aggctcgcgc
      481 ggatgcgaac gatgcgcgcc aggcagatgc gctcgcagga gcttgccgtc cgcgaggctt
      541 ccgccgccta caaatggcgc gcgtggacgg ccgtgagccg agcgctgtca gagcccgaga
      601 taggcccccg gagcggcgag gagacgtacc ggcgcaaccg cgagcgcaac gaagtctgga
      661 cggcggcgcg caatgccgcg tatgacgcct cgacggccgc gggcgaactg gcgcgcctgt
      721 gggaggcggg cgacggcacg cccgagagcc gagccttcgc tgtggcaaag ctccccctgc
      781 tcgccgcctt cgaggccggc ctgttctgct actgggtgac acggacggaa gtcttcgcgc
      841 tgcgccgccc ggagctttac gttgacgcgg aagggcgcct gcacgccgac ggtcgcgctg
      901 ccgtagcgtg gcccgacggc gcacgccttt atgcacttca cggcgtactt gtcccggccg
      961 aaatcgcgct gactccgggc tcggagctta acccgcggct tgtcgtgcgc gagcggaacg
     1021 tcgaggtcag gcgcgagctg gtgaggaaga ttggcttgga gcgactgcta gtcgcgctcg
     1081 gcgcgaagtc ggttgacaag aggggagact acgagctgct catgctcgat ctgggcgacg
     1141 ggcgcgcgcg gccgttcctg aagatgagga acccgagcgt ccccgtctgg cacgtcgagg
     1201 gcgtccaccc cgactgccgc acggtcgccg aggcgctcgc ctggcgcaac ggcacggacg
     1261 tgccgccgtc ggtgctgacc tgagagttaa gaaaaggagt tcaaccatgc ccgaggataa
     1321 aaagctcgtc tggtatcagc agggcgacgt gaccatcaag ccggtcgcgg agattcccgc
     1381 cggggccgcg cctaagcagg ggcgcgtgct gcgcgagggc gaagccacgg gccacgcgca
     1441 cgtggcgacc ggcgagggcg tcgagctgtt catacacgac ggcactctct acatgcgcgc
     1501 gccgtccggg gcgcgcgtcg tccacgaaga gcacgaggcg caggaggttc cgcccggcac
     1561 atacgtcatc ggcgccgttc gcgagtacga ccacttcgcg gaagacgtaa ggccggtctt
     1621 cgactgaagt gacgccggag ccgttcttcg cgtcgttgtg ggagggcgcg ggggctgcta
     1681 aactctcgct tcggccgccc cgctaggagt ctttcccatg cgcaaacgtt ccccgcacgt
     1741 gctcgaaaag tcgcacacac gtttagcctt cgccctgctg cttctcgtgg cggcggaggg
     1801 cgcggtagtg gcgcagtcgg gggacgtgaa cttcccgtcg cccatcttct cgaacgaggt
     1861 gacgggccgc atcgcccctc gcgacgtggg cgacccgcgg cggacacgcc acttctacac
     1921 cttccgcggg gtcgagggcg acctcgtcgt caacctcgaa agctccgagc ttctgggtgc
     1981 cgttgacgtg ttcacggcga cgacctcgcg gcctctcata aacatcacgc tgctcggcgg
     2041 gacgcagaca cgcgtcgtga agagcgtcta tctccggggc gaggaactgc tggtgctgcg
     2101 ggtcgaagcg cgcgccgcgg gtgacgcaga gggctcgtac aaaatccgct tcgagggagc
     2161 gttcgcgccc gcgccagccg ggcttgccga agcgccggcc gagcccgcgc ccaccgtctc
     2221 gaactcggag cggagaggca cgcggcgcgt cacttcgacc ggcgcgcgca tacccgagcc
     2281 gccccgcccc gccgaggagg cgaaggccga gccgactccg acgcccgccg cgaccgcctc
     2341 gggaagcacg gccgagcccg cggcgcgcgc gcccgccccg cgccgcggcg gccgaggcac
     2401 gacgcgcact ccgacgcgac gacagccgac ccgccgcgcg cctccagcaa ggcccgccca
     2461 gcccgagcca acgacaggca cggccgaggc tgcgacgact acggaaggag ccacgcccgc
     2521 cgatgcaaag cccgggggcg aggcggcgcc gaccgagagc ccggcgaggc cgccgcgccg
     2581 aagggcttct tcttcgcgct cgtcgcgcag gggctcaacg cccgaggccg cgccgcagcc
     2641 ggcgcccgcg ccgacccagc gcctcatcat cgtgacgaaa gacggcgaga ccgtcgagcg
     2701 agacatgagc accgtccgtc gcgtgacagt ggagaataat caggtggtcg tcgtcacgcg
     2761 cgacgggaga acgacgagga cgccgatgtc gaacgtc
//
LOCUS       DASPKR010000712         2490 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_373189, whole genome shotgun sequence.
ACCESSION   DASPKR010000712 DASPKR010000000
VERSION     DASPKR010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2490)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2490)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2490
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373189"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..>2490)
                     /gene="alaS"
                     /locus_tag="VD968_18735"
     CDS             complement(166..>2490)
                     /gene="alaS"
                     /locus_tag="VD968_18735"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HYE16481.1"
                     /translation="GDEEVPADDEAAELWVKAGARPERVLRFGRKDNFWQMAETGPCG
                     PNSEINYYLGEHPEDPEFNRAELVNGPGDTTMEIWNLVFMQYNRVEESPGKYRLEPLP
                     KPSVDTGMGLERMTAVLQGVKTNYDTDIIRPVIEFTAELAGRAYEPETKEGFAMRVIA
                     DHARAAAFSIADNILPGNEGRNYVLRKIMRRAIYHGRHALGLDGLFFHRVTGFVVGQM
                     REAYPELEAARDFIERMVRLEEERFGSTLTTGLQKLDALFASTPEGAMPDYKELARLY
                     DTFGTPRDLIRVGLEERGFVLDEETYNEEFDRALKELQGAGAKAQAAAAAKANPAYAA
                     IAERVGRVEFTGYDETRTDGARVLALLRGEEETEELGEGEEGEVVLDRTPFYAEAGGQ
                     VGDTGAMVNAETHAAVNDTPAVPAPGLVVHRVKIERGRLRVGDAVTAQVDAEKRDSTR
                     RNHTATHLLHAALREVLGTHVKQAGSVVAPNYLRFDFSHYQPLTRDELAELERLVNYH
                     VLRNEPVQTDVLSLDEAMRSGAVALFGEKYAERVRVLTVPGFSKELCGGTHVRATGDI
                     GLFKIVSDESIASGTRRIRAVTGRDAFVRFQETEALVDQLSSELRASRNDIPVAVERL
                     QEELKRARREADELRLKLALGAGAPAGNGGEAREIAEGVLVLAREASDLDAQALRQLS
                     DTLLAQVKTGVVVLGRRSDGKASLIVRTTPDLSKRVPAGQVIKELAPIIGGRGGGKPD
                     MAEGGGPEPQKLAEALEASYQVIERLLGAQGASA"
BASE COUNT          355 a          826 c          868 g          441 t
ORIGIN      
        1 ttgcagaaga tgagcatccc gctgaccgac aggcagaagg tgatagccgc ggctcagcag
       61 cagaagacga cctgagccgc gcagtcgggg tgttagaagt ttaatggccg ccgaacttcc
      121 tttcgtgaag cccggcggcc attaaatcat cttcgagttt taagttcagg ccgacgcgcc
      181 ctgcgcgccg agcagtcgct cgatgacctg gtagctggct tccagagctt ctgcgagctt
      241 ctgcggctcg gggccgccgc cctcggccat gtcgggcttg ccgccgccgc gaccgcctat
      301 gatgggcgcg agctccttta tgacctgacc ggctgggacg cgcttcgaca ggtcgggcgt
      361 cgtcctgacg atgagcgaag ccttgccgtc ggagcgccgg cccaggacga cgacacccgt
      421 cttgacctgc gcgagcagcg tgtcggagag ctgcctgagt gcctgcgcgt cgaggtcgct
      481 cgcctcgcgc gcgagcacga ggacgccctc ggcgatctcg cgggcctcgc cgccgttccc
      541 ggcgggcgcc ccggcgccga gcgcgagctt cagtcgcaac tcgtcggcct ctcgccgcgc
      601 gcgctttagc tcctcctgaa ggcgctcgac ggcgacgggg atgtcgttgc gcgaggcgcg
      661 aagctcggag gaaagttggt caacgagagc ctcggtctcc tggaagcgca cgaaggcgtc
      721 gcggcctgtc acggcgcgta tgcggcgcgt ccccgaggca atggactcgt cgctcacgat
      781 cttgaagagc cctatgtcgc cggtggcgcg gacgtgagtg ccgccgcaga gctccttcga
      841 gaagccgggg actgtcagga cgcgcacgcg ctcggcgtac ttctcgccga agagcgcgac
      901 ggcgccggag cgcatcgcct cgtcgaggga gagcacgtcg gtctgcacgg gctcgttgcg
      961 caggacgtga tagttgacga ggcgttccag ctcggccagc tcgtcgcgcg tcaagggctg
     1021 gtagtgcgag aagtcgaagc gcaggtagtt gggcgccacg accgagcccg cctgcttgac
     1081 gtgcgtcccc aacacttcgc gcagcgcggc gtgaaggagg tgcgtggccg tgtggttgcg
     1141 ccgcgtagag tcgcgcttct ctgcgtcaac ctgcgccgtg acggcgtctc cgacgcgaag
     1201 gcgcccgcgc tcgatcttca cgcggtggac gacgaggccg ggcgcaggca cggccggcgt
     1261 gtcgttgacg gccgcgtgcg tctcggcgtt gaccatggcg ccggtgtctc cgacctgccc
     1321 gccggcctcg gcgtagaagg gcgtgcggtc gaggacgacc tcgccctcct cgccttcgcc
     1381 caactcttcc gtctcttcct cgccgcgcag cagcgccagg acgcgcgcgc cgtccgtgcg
     1441 cgtctcgtcg tagccggtga actctacgcg gccgacgcgc tcggctatcg ccgcgtaagc
     1501 ggggttagct ttggcggcag ccgccgcctg agccttcgcg ccggcgccct gtagctcctt
     1561 gagcgcgcgg tcgaactcct cgttgtaagt ctcctcgtcg agcacaaatc cgcgctcttc
     1621 gaggccgacg cggatgaggt cgcgcggcgt gccgaaggtg tcgtagaggc gcgcaagctc
     1681 tttgtagtcg ggcatggcgc cctcgggcgt cgaggcgaac agcgcgtcga gcttttgcag
     1741 gcccgtcgtc agggtcgagc cgaagcgctc ctcttcgagg cgaaccatgc gctctataaa
     1801 gtcgcgcgcg gcttcgagct cagggtaggc ttcccgcatc tggccgacga cgaagcccgt
     1861 cacccggtgg aagaagaggc cgtcgagccc gagcgcgtgg cggccgtggt agatcgcgcg
     1921 gcgcatgatt ttgcgcagca cgtaattgcg cccctcattg ccgggcagga tgttgtcggc
     1981 tatggagaag gccgcggcgc gcgcgtggtc ggcgatgacg cgcatggcga agccttcctt
     2041 cgtctctggc tcgtaggcgc ggccggcaag ctcggccgtg aactcgatga cgggccggat
     2101 gatgtccgtg tcgtagttcg tcttgacgcc ttgcagcacg gccgtcatgc gttccagccc
     2161 catgcccgtg tcaaccgagg gcttgggcag cggttcgagc ctgtacttgc cgggcgactc
     2221 ctcaacgcgg ttgtactgca tgaagacgag gttccatatc tccatcgtcg tgtcgcccgg
     2281 gccgttgacc aactcggcgc ggttgaactc agggtcctcg ggatgctcgc cgaggtagta
     2341 gttaatctcg gagttggggc cgcaggggcc ggtctcggcc atctgccaga agttgtcctt
     2401 gcggccgaag cgcagcacgc gctcggggcg cgcgccggcc ttcacccaaa gctccgccgc
     2461 ctcgtcgtcg gccggcacct cttcgtcgcc
//
LOCUS       DASPKR010000713         2426 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1017312, whole genome shotgun sequence.
ACCESSION   DASPKR010000713 DASPKR010000000
VERSION     DASPKR010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2426)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2426
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1017312"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..707)
                     /locus_tag="VD968_18740"
     CDS             complement(<1..707)
                     /locus_tag="VD968_18740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16482.1"
                     /translation="MSHLRLMVGAGALEGRRWAREHLYSLLVLTPLVLGMTYLGVGRV
                     VEDSDWRPSDEVAAGLAVSAAACLLALGVSRAVAEIYHLRRPESLFDALPVSARAQLA
                     AALVRRAARVSGAAAAAVVARTLAGGGLWDARLPALLACFVAVTASGQALAAVQWVHW
                     GHRRERAHAAVALLMFAACSVAAGLLLFVAVKPWAAPELGRAWLVAGSIALAGATLLL
                     LFALHERWRASDLEYAKR"
     gene            complement(704..1660)
                     /gene="ftcD"
                     /locus_tag="VD968_18745"
     CDS             complement(704..1660)
                     /gene="ftcD"
                     /locus_tag="VD968_18745"
                     /EC_number="2.1.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR02024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030409 - glutamate formimidoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0030412 - formimidoyltetrahydrofolate
                     cyclodeaminase activity [Evidence IEA];
                     GO_process: GO:0019556 - histidine catabolic process to
                     glutamate and formamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate formimidoyltransferase"
                     /protein_id="HYE16483.1"
                     /translation="MTSGEQVGGRGRLVECVPNFSEGRDARVVASLVEAVESVEGALV
                     LGTHVDADHNRSVVTFVAPPERVVEAAVRVVGRAAELIDLRAHAGEHPRVGATDVLPF
                     IPIRGLTVEECVVLAHEAGRRIWDKLRIPVYFYESAATRPERRNLADVRRGGFELLSE
                     QIATVAERAPDVGEPRLHPSAGACIVGVRPLLIAYNVNLRTGDVSVAKRIARAVRERD
                     GGLPSLKALGFELVSRGVVQVSMNLTSYERTNLHQAFEAVRREAERLGVEILGSEIVG
                     LVPQAALDRAAAHFLQLENYSPDLVLENRIAAALERKKRGGG"
     gene            complement(1657..2148)
                     /locus_tag="VD968_18750"
     CDS             complement(1657..2148)
                     /locus_tag="VD968_18750"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HYE16484.1"
                     /translation="MEEFLKDFRRTVEEASARLLSMTESESEARPAPGAWSAKETIGH
                     LIDSAANNHQRFVRAQFKEDLAFPGYEQDEWVAAQKYQQEPWPLIVNLWRAYNLHLAH
                     VAANVPEEKLKLPRREHTLNSIAFNLVPETEPATLEYLIRDYLAHLKHHLGQITAGES
                     EGR"
BASE COUNT          376 a          885 c          802 g          363 t
ORIGIN      
        1 cgcttcgcgt actccaaatc cgaagcgcgc cacctctcgt gcagcgcgaa gaggagcaac
       61 agcgtcgcgc ccgcgagcgc gattgacccg gccacgagcc acgcgcggcc caactccggc
      121 gccgcccacg gcttcacagc gacgaacagc agcagccccg ccgccacgga gcacgccgcg
      181 aacatcaaga gagccactgc ggcgtgcgcc cgctcgcgcc tgtggcccca gtgaacccac
      241 tgaacggcag cgagcgcctg gcccgaggcc gtcaccgcga cgaagcacgc gagcagggcc
      301 gggagccgcg cgtcccacag gcccccgccc gcgagcgttc gcgcgacgac ggccgcggcc
      361 gccgcgcccg acacgcgcgc ggccctccgc acgagcgcag ccgcgagctg cgcgcgcgcc
      421 gagacgggca gcgcgtcgaa tagagactcc ggccgccgca ggtggtaaat ctccgcgacc
      481 gcgcgcgaca cgccgagcgc cagcaggcac gccgccgccg acacggccag ccccgccgcg
      541 acctcgtctg agggccgcca gtccgagtcc tccaccacgc ggccgacgcc cagataagtc
      601 atcccgagca cgagcggcgt cagcaccagc agcgagtaga ggtgctcgcg cgcccagcgt
      661 cggccctcca aagcccccgc ccccaccatc agcctcagat gactcatccg ccgcccctct
      721 tcttcctttc gagcgcggcg gcgatgcggt tttcgagcac gaggtcgggc gagtagtttt
      781 cgagttggag gaagtgcgcg gccgcgcggt ctaaggccgc ctgcgggacg aggccgacaa
      841 tctcgctgcc caaaatttct acgccgagcc gctcggcctc tcgccggacg gcctcgaaag
      901 cctggtgcag gttcgtcctc tcgtagctcg tcagattcat agagacctgc acgacgccgc
      961 ggctcacgag ctcgaagccg agcgccttca ggctcgggag cccgccgtcg cgctcgcgca
     1021 cggcgcgcgc gatgcgcttc gccacggaca cgtcgcccgt gcgcaggttc acgttgtagg
     1081 cgatgaggag cggccgcacg cccacgatgc acgcgccggc cgacgggtgg aggcgcggct
     1141 cgcccacgtc gggcgcgcgc tccgcgacgg tcgctatctg ctcgcttagc agctcgaagc
     1201 cgccgcgccg cacgtcggcg aggttgcggc gctcgggcct cgtggccgcg ctctcgtaga
     1261 aatagacggg aatccgaagc ttatcccaga tgcggcggcc cgcctcgtgc gcgagcacga
     1321 cgcactcctc gaccgtgagc ccacggatgg ggatgaaagg cagcacgtcg gtcgcgccca
     1381 cgcgcgggtg ctcgcccgca tgggcgcgca ggtcaatcag ctcggccgcc cggccgacga
     1441 cgcgcaccgc cgcctcgacc accctttcgg gcggcgcgac gaacgtgacg acggagcggt
     1501 tgtggtcggc gtcaacgtgt gtgccgagca cgagcgcgcc ctcgaccgac tcgacggcct
     1561 cgacgagact ggcgaccacg cgcgcgtcgc gcccctcgct gaagttcggc acgcactcga
     1621 cgaggcggcc cctgccgccg acctgttcgc ccgaagtcac cggccctccg attcgcccgc
     1681 cgttatctgc ccgaggtggt gcttgaggtg cgcgaggtag tcgcgtatga ggtattcgag
     1741 cgtcgcgggc tccgtttcag gcacgaggtt aaaagcgatg ctgttcagcg tgtgctcgcg
     1801 cctcggaagt tttaatttct cctcggggac gttcgccgcc acgtgcgcga ggtgcaggtt
     1861 gtaggcgcgc cagaggttga ctatcagcgg ccacggctcc tgctggtatt tttgcgcagc
     1921 gacccactcg tcctgctcgt agccggggaa ggcaaggtct tccttgaact gcgcgcgcac
     1981 gaagcgctgg tggttgttcg cggccgagtc tatcaggtgg cctatcgtct ccttcgcaga
     2041 ccacgcgccg ggcgcgggcc gcgcctcgct ctccgactcc gtcatcgaga gcagccgcgc
     2101 cgacgcctcc tcgaccgtcc gcctgaagtc tttcaggaat tcttccatgc ccctctcctt
     2161 ccgcgcgcgt gcggattgta gaatgcgtga tgcggattgg aaaagcgtat cgtgcggctg
     2221 ttatgattcg gcgccggcct gctctgcttt gaaagatggc tacctcggac aagttcatca
     2281 aggagagaaa gggcgcttgg cagcgtctgg aggatttgct gacgctgctc gaccgctcgt
     2341 ccctgcgccg cctgcaccgc gaggaggtgc gcgagttggg gcgtatatac cgccgcacgg
     2401 cctcggacct tgcgattgcc cgcgcc
//
LOCUS       DASPKR010000714         4257 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_244667, whole genome shotgun sequence.
ACCESSION   DASPKR010000714 DASPKR010000000
VERSION     DASPKR010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4257)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4257
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244667"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1329)
                     /locus_tag="VD968_18755"
     CDS             complement(<1..1329)
                     /locus_tag="VD968_18755"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HYE16485.1"
                     /translation="MKFIVNLAWRELRSSWRRLLFFFVCIGVGVGSIVALRSMIGNLN
                     RSVAGEARALMTADVQLDSSREWSAEALSAVERVARPPLVEARVETVEAPTMLRPEDA
                     SKGSALMVELKGVEPPFPLYGEFVLADGLAFNHSMLAGDGALVSPLLIERTGLKVGDR
                     VLLGEKAFEIRGVVKQEPGGGGGGAGLRLGPRVFVSRGALEGAGLTGWGSRARRRLLF
                     KTPEGRAEELARALRAEFRGNSLYGVRSYKDSEEATARQFERAENYLSLTGLVILVLG
                     GIGVSSVTRVFIEQRKKSIAVLKCVGGTGRMLTAAYLAQVLTLGLAGSALGVALSKLA
                     LSFVRARFADSLPANLSYDLQPGAVAQGLGLGLLISLLFSALPLLRIRNIRPNMLLRE
                     TAEPAPRRWLDLWRWAVGLTVLAGLAFLTSWQAGSATVGVFFLAGLGATAA"
     gene            complement(1326..2060)
                     /locus_tag="VD968_18760"
     CDS             complement(1326..2060)
                     /locus_tag="VD968_18760"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE16486.1"
                     /translation="MIELYQVSKTVQSGAERLTILCELDLLIPDGQFVAVVGPSGSGK
                     STLLGLVAGLDAPTAGRIKIDGEDITSMGEDALARLRGRKVGFVFQSFHLIPSMTALE
                     NVLAPMEIAGVPGAQERARQLLRDVELTERAHHYPSQLSGGEQQRVAIARAFSNNPKI
                     LLADEPTGNLDSRNGGHVFDLMLEMNRRRGATLVLVTHDHELAGRADRRISLRDGRVV
                     ADEVLRGGEAAAGEDFSGEELEAAAS"
     gene            2101..2802
                     /locus_tag="VD968_18765"
     CDS             2101..2802
                     /locus_tag="VD968_18765"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylesterase"
                     /protein_id="HYE16487.1"
                     /translation="MPALCLAFAALLQACSDGSPGGTAAQSNRPESKPSPAAAAAQTL
                     PKIVAFGDSLTAGYGLASERESYPALLQKKLDADGFKYEVINAGVSGDTSAGGLRRID
                     WALDAGDVRFVILELGANDFLRGQPVAETKKNLSQIIERSKARGARVLLAGMYTTTNA
                     GRDYQRQIHEAFQSLASEHDVPLIPFFLEGVAGESRLNLDDGVHPNAEGTRVVAENVY
                     KHLKPMLEEGRAEGK"
     gene            2827..3996
                     /locus_tag="VD968_18770"
     CDS             2827..3996
                     /locus_tag="VD968_18770"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF015451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYE16488.1"
                     /translation="MPETDVVIIGGGAAGLMCAIEAGRRGRRVVVIEHNGRVGRKIEI
                     SGGGRCNFTNLHSTPKNFLSANPHFAKSALARYTPADFVALVERHRISYHEKKAGQLF
                     CDGSARQIIGMLLAECASAEAEILTECRVGEVRKGARFSVVTSRGEFGCESLVVAAGG
                     LSIPKIGATDLGYRLARQFGINVLRPEPALVPLTLGDEDLAAFRPLSGVSVEAVVRCG
                     GAEFAESLLVTHRGLSGPAVLQASSYWSRGDALSVNLLPGEGAREFLEANRGREVGLA
                     ALLSHKLPRRFAQVWCELYAPAKPLKSYTAAELSETAARLAGWRIEPAGTEGFQKAEV
                     TKGGVDTAELSSKTMEARRVPGLYFIGEVVDVTGHLGGHNFQWAWASGHAAGQYV"
     gene            complement(4002..>4257)
                     /locus_tag="VD968_18775"
     CDS             complement(4002..>4257)
                     /locus_tag="VD968_18775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012077405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HYE16489.1"
                     /translation="GAPLTRQFVWAMLKKCAERAGVSGVSPHVLRHSFATHLLEHGAD
                     TRSVQAMLGHSDLETTQIYTHVTGDRLRAVYEKFHPRAKD"
BASE COUNT          717 a         1476 c         1418 g          646 t
ORIGIN      
        1 cgcggccgtc gcacctaagc cggcgaggaa gaagacgcct accgtggcgg agcctgcctg
       61 ccacgaggtc aggaacgcga gccccgcgag cacggtaagg ccgacggccc agcgccagag
      121 gtctagccag cgccggggcg ccggctcggc cgtctcccgc aggagcatgt taggccggat
      181 gttgcgaatc cgaaggagcg ggagcgccga gaagagcaga gagatcagga gcccgagccc
      241 cagcccctgc gcgacggcgc cgggttgcag gtcgtagctc agattcgcag gcaggctatc
      301 ggcgaagcgc gcgcgcacga acgagagcgc cagcttcgag agcgcgacgc ccagcgcgct
      361 ccccgcgagg ccgagcgtga gaacctgcgc gaggtacgcg gccgtgagca tcctccccgt
      421 cccgccgacg cacttgagca cggcgatgct cttcttgcgc tgctcgatga agacgcgcgt
      481 taccgaagag actccaatgc cgccgaggac tagtatgacg aggcctgtca gcgagaggta
      541 attctccgcg cgctcgaact gccgcgcggt cgcctcttcc gagtccttgt aggagcgcac
      601 gccgtagagg ctgttcccgc gaaactccgc gcgcagcgcg cgcgcaagct cttcggccct
      661 gccctccggc gtcttgaaga ggagacggcg gcgtgcgcgg ctgccccagc ccgtgagccc
      721 cgcgccttcg agcgcgccgc gcgagacgaa gacgcgcggc ccgaggcgca agcccgcgcc
      781 gcccccacct ccgcccggct cctgcttaac gacgccgcga atctcgaacg ccttctcgcc
      841 gaggagcacg cggtctccga ctttgagccc cgtgcgctcg atgagcagag gcgagacgag
      901 agcgccgtcg cccgcgagca tcgaatgatt gaaagcaagc ccgtcggcca acacaaattc
      961 gccgtagagc gggaagggcg gctccacgcc tttgagctcg accatcagcg ccgagccctt
     1021 cgaggcgtcc tccggcctca gcatcgtcgg cgcctcgacc gtctcaaccc gcgcctcgac
     1081 gagcggcggg cgcgcgactc gctcgacggc cgagagagcc tccgccgacc actcgcgcga
     1141 cgagtcgagc tgcacgtctg ccgtcatcag agcgcgcgcc tcgcccgcca ccgagcggtt
     1201 caggttccct atcatcgagc gcagcgcgac gatgctcccg accccgacgc ctatgcacac
     1261 gaagaagaag agaagccgcc gccacgagga gcgaagctcg cgccaggcga gattgacaat
     1321 gaacttcacg acgcggccgc ctccaactct tcgcccgaga agtcttcgcc cgcggcagcc
     1381 tcgcctccgc ggagaacctc gtccgcgacg acgcggccgt cgcggagcga tatgcggcgg
     1441 tctgcgcggc ccgcaagctc gtggtcatgc gtgacgagga cgagggttgc gccgcggcgc
     1501 ctgttcattt cgagcataag gtcgaagacg tggccgccgt tgcgcgagtc gaggttgccc
     1561 gtcggctcgt cggccagaag aatcttcggg ttgttcgaga aggcgcgcgc aatcgcgacc
     1621 ctctgctgtt cgccgcccga gagctgcgaa gggtaatggt gcgctcgctc ggtcagctca
     1681 acgtctcgga gcagttggcg cgcgcgctcc tgcgcccccg ggacgcccgc gatctccatc
     1741 ggcgccagaa cgttctccag ggctgtcatc gaagggatga ggtgaaacga ctggaagacg
     1801 aagcctacct tgcggccgcg cagccgcgcg agcgcgtcct cgcccatgct ggttatgtcc
     1861 tcaccgtcta tctttatacg ccccgcggtc ggggcgtcga ggcccgcgac cagaccgagc
     1921 agcgttgact tgccgctccc cgaaggccca acgacggcga cgaactgccc gtccggtatc
     1981 agaaggtcaa gctcgcacag gatggtcagg cgctcggcgc cggactgcac cgtcttcgac
     2041 acttggtata attcgatcat gaaaagtttt cttccgttta ttcgtcccgg cagggctttg
     2101 atgcccgcgc tctgcctggc tttcgccgct cttttacagg catgctccga cggctcgccg
     2161 ggcggtacgg ccgcacaatc gaacaggccc gaatcaaagc cctccccggc cgccgccgcc
     2221 gcccagactt tacctaaaat cgtcgccttc ggcgacagcc tgacggccgg ctacgggctc
     2281 gcctccgagc gcgagagcta ccccgcgctc ctgcaaaaga agctcgacgc ggacggcttc
     2341 aagtacgaag tcataaacgc cggggtttcg ggcgacacct cggcgggcgg gctgcgccgc
     2401 attgactggg cgctcgacgc cggcgacgtg cgcttcgtca tactcgagct cggggccaac
     2461 gacttcctgc gcggccagcc cgtcgccgag actaaaaaga acctctcgca gataatcgag
     2521 cgctcgaagg cgcgcggcgc ccgagtcctg ctagcaggca tgtacacgac gacgaacgcc
     2581 gggcgcgact accagcggca gattcacgaa gccttccagt cgctcgcctc ggagcacgac
     2641 gttccgctca tccccttctt cctcgaaggc gtcgccggcg agagccgcct caacctcgac
     2701 gacggcgtcc accccaacgc cgaaggcaca agggttgtcg ccgaaaacgt ctataagcac
     2761 cttaagccca tgctcgaaga gggccgggcc gagggcaaat gacttcggcg gagagataaa
     2821 cggcgagtgc ctgaaacgga cgttgtcatc atcggcgggg gcgcggcggg gctgatgtgc
     2881 gctatcgagg cgggcaggcg cggccggcgc gtcgtcgtca tcgagcacaa cgggcgcgtc
     2941 ggccgcaaga tagagatttc gggcggcggc cgctgcaact tcacgaacct gcactcgacg
     3001 ccgaagaact tcctttcggc caacccgcac ttcgctaagt cggcgcttgc gcgctacacg
     3061 ccggccgact tcgtcgcgct cgtcgagcgc caccgcatca gctaccacga gaagaaggcc
     3121 gggcagctct tctgcgacgg gagcgcgcgc cagattatcg ggatgctgct cgccgagtgc
     3181 gcctcagccg aggccgagat tctgaccgag tgccgcgtgg gtgaggttcg gaagggcgct
     3241 cgcttcagcg tcgtgactag ccgcggcgag ttcgggtgcg agtcgctggt cgtcgcggcc
     3301 ggcgggctct ccatcccgaa aataggcgcg accgacttag gctaccggct cgcccgtcag
     3361 ttcggcataa acgtcctgcg gccggagccc gcgctcgtcc cgctcacgct cggcgacgaa
     3421 gacctcgccg ccttccgccc cttgagcggc gtctccgtcg aggcggtcgt ccgctgcggc
     3481 ggcgctgagt tcgccgagag cctgctcgtc acgcaccgcg gcttgagcgg cccggcggtg
     3541 ttacaggctt caagctattg gtctcgcggc gacgcgctct ccgtcaacct tctgcccggt
     3601 gagggggcgc gtgagtttct cgaagcgaac cgcgggcgcg aagtcgggct cgccgcgctc
     3661 ctcagccaca agttaccgcg ccgcttcgcg caggtctggt gcgagcttta cgccccggcg
     3721 aagcccctga agagctacac cgcggcggag ctgtccgaga cggccgcccg actcgccggc
     3781 tggcgcatcg agcccgccgg caccgagggc ttccagaagg ccgaggtgac gaagggcggg
     3841 gttgacacgg cggagctttc gtcgaagacg atggaggcgc ggcgcgtccc cggcctctac
     3901 ttcatcggcg aggtcgttga cgtgacgggc cacctcggcg gtcacaactt ccagtgggcg
     3961 tgggcatccg ggcacgcggc ggggcagtac gtctgagaag tctagtcctt cgcgcgcggg
     4021 tggaattttt catagacggc gcggaggcgg tcgccggtga cgtgcgtgta aatctgcgtt
     4081 gtctccaggt cgctgtggcc gagcatggcc tgcacggagc gcgtgtcggc gccgtgctca
     4141 agcaggtgcg tggcgaagct gtggcgcagg acgtgcggcg agacgccgct cacgcccgcg
     4201 cgctcggcac acttcttcag catcgcccag acgaactgcc gcgtgagcgg cgcgccg
//
LOCUS       DASPKR010000715         2003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1933137, whole genome shotgun sequence.
ACCESSION   DASPKR010000715 DASPKR010000000
VERSION     DASPKR010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1933137"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1215)
                     /locus_tag="VD968_18780"
     CDS             complement(<1..1215)
                     /locus_tag="VD968_18780"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE16490.1"
                     /translation="MLAFTFSRRPRVAVFVITLAAAALVSCTRATTPEKNPANYAQVV
                     RAFYVGLSALQVGDDVRAEEKLKEAAALAPQEPASWANLGLLYLRQREFDRAAENLEK
                     AQKLAPESVEIHLLLGLLESSRGRYEEATAALKRAVELDPKNLKALYALSAEAERAGD
                     EGAQLGYLQRILEGQPGNLSVNLEVARIAAKRGDAELFKHISARFAEQAAAWPPEARE
                     QWEAVQAAAAGGQIRAAAPRVQFLRNVLVRLPEYRQSRLAVQDPPEVLGEPFTRFVIL
                     KSPSPQPAPRDGALTFSVETRPAAAEWGGALYLSGEGEPALVFIAGREAQLDGGAKLA
                     FPGGTAAPSPHSVAGLDFNYDFKTDVALAGEGGFRLYGQEGAASFADVTAQTKLSDGV
                     TRSPAAGVWAADV"
     gene            1398..>2003
                     /locus_tag="VD968_18785"
     CDS             1398..>2003
                     /locus_tag="VD968_18785"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYE16491.1"
                     /translation="MSSDGLKRQIGLRTATAVVVGETIAVGIFLTPAGMAKSLGSPAL
                     VLAVWLLMGAMAVCGALCYGELASRFPEAGGDYVYLREAYGRAVAFLYGWMAFLVMGP
                     GLAAGLAVGLAGYAAYALALPPWGQKAVAVGSIVALAAVNVAGVRAGAWLVRWLTALK
                     LGMLLFLIVWGFASGLGDWSNFLPLIEQRSGSDPVIPALAGG"
BASE COUNT          279 a          675 c          704 g          345 t
ORIGIN      
        1 aacgtccgcc gcccacacgc ctgcggccgg cgagcgcgtc acgccgtcgg agagtttcgt
       61 ctgcgcggtc acgtcggcaa acgacgccgc gccctcctgc ccgtagagcc ggaagccacc
      121 ctcgcccgcg agcgcaacgt ccgtcttgaa gtcgtaattg aaatctagtc ccgcaaccga
      181 atgcggcgag ggcgccgccg tgccgccggg gaaagcgagc tttgcgcccc cgtctagctg
      241 agcttcgcgc ccggcaatga agacgagcgc cggctcgcct tcgcccgaga ggtagagggc
      301 gccgccccac tcggccgccg cggggcgcgt ctctaccgag aacgtgagcg cgccgtcgcg
      361 cggcgcgggc tgtggcgaag gcgacttgag gatgacgaag cgcgtgaagg gctcgccgag
      421 aacttccggc gggtcttgga cggcgaggcg gctctgacgg tactcgggca ggcgcaccag
      481 cacgtttctc aaaaactgca cgcgcggggc cgcggcgcgt atctgcccgc ccgcggccgc
      541 cgcctgcacc gcctcccact gctcgcgcgc ctccggcggc cacgccgcgg cttgctcggc
      601 gaagcgcgcg gagatgtgtt tgaagagctc cgcgtcgcca cgcttggccg cgatgcgcgc
      661 gacttcgagg ttgacggaga ggtttccggg ctgcccttcc agaattcttt gaaggtagcc
      721 gagctgcgcg ccctcgtcgc ccgcgcgctc cgcctccgcg gagagcgcgt agagcgcctt
      781 caagttcttc gggtcgagct ctacggcccg cttgagcgcg gcagtcgcct cctcgtagcg
      841 gccgcggctg ctctcaagga gcccgagcag gaggtgtatc tcgacgctct cgggcgcgag
      901 cttctgcgcc ttctccaggt tctcggccgc gcggtcgaac tccctctgtc tcaaatagag
      961 caggccgagg ttggcccacg acgcgggctc ctgcggcgcg agcgcggccg cctcctttaa
     1021 cttctcctcg gcacgcacgt cgtcgccaac ctgaagcgcc gacaggccga cgtagaaggc
     1081 ccggacgacc tgagcgtaat tggccggatt cttttcgggc gtagttgcgc gtgtgcacga
     1141 gacgagcgcc gcggccgcca gagttatgac gaagacggcg acacgagggc gcctggagaa
     1201 agtgaaggct agcattccga agaggttatc ttactgcggg gccgtacaat ccgaaacgtg
     1261 ttcgggcaac actagcacgc gcccccgagg ggtgtcacgt aaccgtggtt ttagccccgg
     1321 ccccaacttt cgttggacgc cgccctgcaa ccccgctacc atgacacggg cggaaggttc
     1381 gtgtggtaat aggcgccttg tcgagcgacg gactcaagcg acagataggg ctgcggactg
     1441 cgacggccgt tgtggtgggc gagaccatcg ccgtcggcat ctttctcacg ccggccggca
     1501 tggcaaagtc gctcggctcg ccggcgctcg tcttagccgt ttggctcttg atgggggcga
     1561 tggccgtctg cggcgcgctc tgctacggcg agttggcctc acgcttcccc gaggcgggcg
     1621 gcgactacgt ttatctgcgc gaggcttacg ggcgggccgt cgccttcctc tacggctgga
     1681 tggcgttcct ggtgatgggg ccggggcttg cggcggggct cgccgtgggg ctcgctggct
     1741 acgcggccta cgcgctcgcg ctcccgccct gggggcagaa ggccgtggcc gtgggctcaa
     1801 tcgtcgcgct cgcggcggtg aacgtggcgg gcgtgcgggc gggtgcgtgg ctcgtgcgtt
     1861 ggctcacggc gctcaagctc ggcatgctcc tcttcctgat cgtctggggc ttcgcttctg
     1921 gcttgggaga ctggtcgaac ttcctgccgc tcatcgagca gaggtcgggg agcgaccccg
     1981 tcatccctgc gctcgcgggc ggg
//
LOCUS       DASPKR010000716         4747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_505917, whole genome shotgun sequence.
ACCESSION   DASPKR010000716 DASPKR010000000
VERSION     DASPKR010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4747)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4747
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_505917"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1005
                     /locus_tag="VD968_18790"
     CDS             <1..1005
                     /locus_tag="VD968_18790"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HYE16492.1"
                     /translation="IDAGLPLVQCLEILSQQQENKFFAQVLTQIRQDVEEGSTLAAAM
                     GRHGRVFDQLFVNMVDAGETGGILDLILQRLSSYIEKIVKLRRDVISALIYPSAVILI
                     AIAVIAVILIFVIPSFQSIFTGLLGPGEALPLPTRIVVAASDFIAGIGGLVILGVIVG
                     AVVGVRSYYKTPGGHRRIDGLLLKVPIVGAILKKIAVARFSRTLATLLSSGVPILQSL
                     EITARTAGNVILEEAINKIRTGVERGESVVEPLRASDVFPHMVSQMVGIGEQTGALDA
                     MLGKIADFYEQEVDSAIASLLTLIEPVMIGFLGVTIGSIVIAMYLPLFTLIGKMANSS
                     "
     gene            complement(1483..3375)
                     /locus_tag="VD968_18795"
     CDS             complement(1483..3375)
                     /locus_tag="VD968_18795"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE16493.1"
                     /translation="MNRARFFSLYFKTTVVLGAAVCVLSASRLTGEHLDPKLLLLAAM
                     TIFFSSRIAIRIPNSSGHITVSDTFIFLTMLLYGGEPAVLLAAAEGAYSSSRFGNNKK
                     TVAFNGLQMALSTFVTVTLLRLIFGPVRDLAETPDLRFFLTAVCFMAVVQYLVNSGLA
                     AVYTAINRNQSIAQTWSKYYLWSSISLLAGASAAGLISRVVKSFSFYYVALTMPIILI
                     IYLTYKTYLKNIEASAAQAEQAERERMREHYSQMEKLSALGELASGVAHNFNNTLTGI
                     LARAQLMLETDDRAEMRRGLHIIIQTAEDGAKTVKRIQDFARQRRDQLFAPIDVDRLM
                     LEVAEITRPRWKDRAEAQNIHIRLDRQISSNAVILGDAGELREVLVNMVFNAVDAMPE
                     GGTLTLSTRESGSDVEVCVADTGVGMTEEVRTRIFDPFFTTKGKAGMGLGLSVSYGII
                     RRHEGSVEVESEVGRGATFRMRFPKATGAPEPDAVTHAARLAGAVRGELRILVVDDED
                     YVRELLADILEREGCEVVLAAEGREALALFDGGGFDAVFTDVGLPGMSGWELARYVRE
                     RDAEIALAVITGWGDTVSPAEQTESQADWVIAKPFTIERITALVHEISQRKASQDLYA
                     VQDAKG"
     gene            complement(3571..4179)
                     /locus_tag="VD968_18800"
     CDS             complement(3571..4179)
                     /locus_tag="VD968_18800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16494.1"
                     /translation="MSLCLAVGILVCDRTSHKLLTAARAQTVDTSPDPCSNPAGERTV
                     YGRNVGVTYGDVVTASLRLRGVMVGKEYVPSVELEGNVALAAASVSPEEGTPVTGVLV
                     GDAVTSNGVLVGDAATTTDEEGPGDGDTPCVNGVLVGDALNVMNGVLVGDAVTADGGT
                     LFGENMRVVDGVLKGDNLRLVGATVRGKGIAIRGAVMTPVAP"
BASE COUNT          869 a         1551 c         1460 g          867 t
ORIGIN      
        1 atagacgcgg gcctgccgct cgttcagtgc ctcgagattc tctcgcagca gcaggagaac
       61 aagttcttcg cgcaggtgct cacgcagata cggcaggacg tggaggaggg ctcgacgctg
      121 gcggccgcga tgggccgaca cggccgcgtg ttcgaccagc tcttcgtcaa catggtggac
      181 gcgggcgaga cgggcggcat actcgacctc atactccagc gcctctcctc ttacatcgag
      241 aagatagtca agctgcggcg cgacgtcata tcggcgctca tctacccgtc ggccgtcatc
      301 ctcatcgcca tagcggtcat cgccgtcatc ctcatcttcg tcatcccctc gttccagagc
      361 atattcacgg ggctgctcgg cccgggcgag gccctgccgc tcccgacgcg catcgtcgtc
      421 gccgcaagcg acttcatcgc gggcatcggc ggcctcgtaa tactcggcgt gatagtcggc
      481 gcggtcgtag gcgtgcgctc ctactacaag acgccgggcg ggcaccgccg tatagacggg
      541 ctactcctaa aagtcccgat cgtcggcgcg atactcaaga agatcgccgt cgcgcgcttc
      601 tcgcgcacgc tcgccacgct cctctcctcg ggcgtcccca tactccagtc cctggagata
      661 accgcgcgca cggccggcaa cgtcatactc gaagaggcga tcaacaagat acgcacgggc
      721 gtcgagcgcg gcgagtccgt ggtcgagccg ctgcgcgcca gcgacgtgtt cccgcacatg
      781 gtctcgcaga tggtcggcat cggcgagcag accggcgcct tggacgccat gctcggcaag
      841 atcgccgact tctacgagca ggaggttgac tcggccatcg ccagcctcct caccctcatc
      901 gagcccgtca tgatcggctt cctcggcgtc accatcggct ccatcgtcat agccatgtac
      961 ctccccctct tcaccctcat cggcaagatg gcgaacagca gctaacctcc ttatacgggt
     1021 gcgccagttc ggcgctgcgc tgcgggaaga cctgggagcc ataagccgcg ccgcccgcgc
     1081 gatgactctg acgacgttgg gcctcgacga taaggtccgg ctaccgcgta acgcacgcga
     1141 ccaggcatgg ctcacggccg cgctccttcg cgcagggcgc agagtcgctc aaggccgagt
     1201 tcatatgccg ctgaccccct tcgggcttca tgagagacgt gagggcggga gtcgaggcgc
     1261 tcgaaaggtc aatcagcgag tagggctagg aaagcaggtg agcgcgtcgc gaccacggta
     1321 gctattgacg aggccatcga gcggtgcgtc aacaccgtag cgcgagccac acggaacgca
     1381 cgcaacgccg cctggccgcc gccacaccca cgctagccaa cactaaaagc atagagggtt
     1441 gacggcagcg ctgccgtcaa ccctctatgc tttaattcgc cactagccct tcgcgtcctg
     1501 gacggcgtag aggtcttggg aggctttgcg ctgtgagatt tcgtggacga gggcggtgat
     1561 gcgctcgatg gtgaagggct tggctatgac ccagtcggcc tgcgactcgg tctgctcggc
     1621 ggggctcacg gtgtcgcccc agcccgttat gacggccagg gctatttcgg cgtcgcgctc
     1681 gcgcacgtaa cgcgccagtt cccagccgct catgccgggc agcccgacat cggtgaagac
     1741 ggcgtcgaag ccgccgccgt cgaagagcgc gagtgcctcg cgcccctcgg cggcgagcac
     1801 cacctcgcag ccctctcgct cgagtatgtc cgccagaagc tcccgcacgt aatcctcgtc
     1861 gtcaactacg agtatgcgca gctcgccgcg cacggcgccc gcgaggcgcg ccgcgtgcgt
     1921 caccgcgtct ggctcgggcg cgcccgtggc cttcgggaat ctcatgcgga acgtggcccc
     1981 tcgccccacc tcggactcga cctccacgct cccctcgtgg cgccgtatga tgccgtagct
     2041 cacagagagc cccagcccca tgccggcctt gcccttcgtc gtgaagaacg ggtcgaatat
     2101 gcgtgtgcgc acctcctccg tcatccccac gcccgtgtcc gccacgcata cctccacgtc
     2161 cgagcccgac tccctcgtag agagcgtgag ggtgccgccc tcgggcattg cgtccacggc
     2221 gttgaagacc atgttgacta agacctcgcg cagctcgccc gcgtcgccga gtatcacggc
     2281 gttcgagctt atctgacggt cgaggcgtat gtgtatgttc tgcgcctcgg cgcgatcctt
     2341 ccagcgcggc cgcgttatct ccgcgacctc gagcatgagc cggtcaacgt caattggcgc
     2401 gaagagctgg tcgcggcgct ggcgcgcgaa gtcctgtatg cgcttgacgg tctttgcgcc
     2461 gtcctcggcc gtctggatga ttatgtggag gccgcgcctc atctccgcgc ggtcgtccgt
     2521 ctccagcatt agctgagcgc gggcgagaat ccccgtcaga gtgttgttga agttgtgcgc
     2581 cacgcccgac gcgagctccc cgagcgcaga gagcttctcc atctgcgagt agtgctcgcg
     2641 catgcgctcg cgctctgcct gctcggcctg cgccgccgaa gcctctatgt tcttcaggta
     2701 ggtcttgtag gtgaggtaga tgatgaggat tatcggcatc gtcagcgcaa cgtagtagaa
     2761 gctgaagctc ttgaccacgc gcgagatgag ccccgcggcc gacgcgcccg ccaggagcga
     2821 aatcgaagac cagaggtagt acttgctcca ggtctgcgcg atgctctggt tgcggttgat
     2881 ggccgtatag acggcggcga ggccggagtt tacgaggtac tgcacgaccg ccatgaagca
     2941 gacggccgtc aggaagaacc tcagatcggg cgtctccgcg aggtccctca ccggcccgaa
     3001 gatgagccgc agcagcgtga ccgtcacgaa ggtcgagagc gccatctgca ggccgttgaa
     3061 ggccaccgtc ttcttgttgt tgccgaagcg agaggaggag taggcgccct cggccgccgc
     3121 caaaagcacg gcaggctcgc cgccgtagag cagcatcgtc aggaagatga aggtgtccga
     3181 gaccgttatg tggccgctcg agttcggtat ccgtatggcg atgcgcgagc tgaaaaaaat
     3241 cgtcatcgcg gccagcagca gcagcttcgg gtcgaggtgc tcgcccgtga ggcggctcgc
     3301 gctgagcacg cagaccgccg cccccagcac gacggtcgtc ttgaagtaga ggctaaagaa
     3361 gcgggctcgg ttcataaatt taaaggcgcg cggcggccgg ccgggcgcga ccgcgtgagg
     3421 ctcgggggcc actcaagtct aattccgccg ccggccccag tcaaagttta aaaggcgagc
     3481 ggggcttttt tcggccggca cgaaataagg ggctaaggcg ttaataagcg cctcagcccc
     3541 ttatcccact tacggccggc cctgctagcc ctacggagcg acgggcgtca tgacggcgcc
     3601 cctgatggca atacctttgc ccctgaccgt cgcgcccacg agcctgaggt tgtcgccctt
     3661 gagcacgccg tcaacgacgc gcatattctc gccgaagagc gtcccgccgt cggccgtgac
     3721 ggcgtcgccg acgagcacgc cattcatgac gttaagagcg tcgccgacga gcacgccgtt
     3781 cacgcaaggg gtgtcgccgt cgcccggccc ttcttcgtcc gtcgtagtgg ccgcgtcgcc
     3841 gacgagcacg ccgttactcg tcacggcgtc gcccaccagc acgcccgtca cgggcgtccc
     3901 ctcttcgggc gagacgctcg ccgccgctag cgcgacgttg ccctccaact cgacgctcgg
     3961 cacgtactcc ttcccgacca taacgccgcg gagcctgagt gaagcggtga caacgtcgcc
     4021 gtaggttacg cccacgttcc tgccgtacac cgtgcgctcg ccagcgggat ttgaacaagg
     4081 gtcgggtgat gtatcaacgg tctgcgcgcg ggcggcggtg agcagtttgt ggctcgtcct
     4141 gtcgcacacg agtatgccga cggccaagca gagtgacacc aagagggatg ccacggggga
     4201 gagtggattt cgtttcacgc tagcctccaa attattctga tagatgtgtt actcgatgcc
     4261 cgccccgagg catctacggg ttacagacga agccccgcct acccttcctg tttgcgtaga
     4321 aagttgttcg gaggaggttc aagggacagg cggccgggag ccaacctcgg gggcgaagac
     4381 gccggccgga gcgcagatta atggaaggca gtcggcttgt caacttcttt acttacaacg
     4441 acttatttaa ctcagttaaa aaattgcaaa ttctattgca gatgaaggct tttttgcaat
     4501 tgtctcggaa tcggactggc ccgcccattc aacttgacct tccagccccg agaagaaaag
     4561 aggccggccg agggctttcc cgaaccctcg gccggcctct tctcttctag gggccggaag
     4621 gtcaagttga atgggcgggt cagcccgatt ccgagacaat tgcaaaaaag ccttcatctg
     4681 caatagaatt tgcaattttt aacttagtta aataagttgt tgtaagtaaa gaagttgaca
     4741 agccaac
//
LOCUS       DASPKR010000717         2889 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_756552, whole genome shotgun sequence.
ACCESSION   DASPKR010000717 DASPKR010000000
VERSION     DASPKR010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2889)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2889
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_756552"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            187..2037
                     /locus_tag="VD968_18805"
     CDS             187..2037
                     /locus_tag="VD968_18805"
                     /inference="COORDINATES: protein motif:HMM:NF012961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 9 protein"
                     /protein_id="HYE16495.1"
                     /translation="MRRSIRSSVSACLALLALLPLAVAQTPGAAEGARVFVRVNQVGY
                     LTSGAKVAVAFAREPLPEGFTVVDAATGKTVFEGAARQVHGSWGEFAHHAELDFSPLK
                     RPGRFFVRVGPAQSQPFAVGPGAYSGLPDQLLEFMRQQRCGYNPWLDAVCHPFDGRTA
                     YGPLPAGTYLDATGGWHDAGDQLKYLLTSSNATAQMLLAYVLGEEEGRRAGKPGRAFF
                     RDDFNELGQPGANGTADILDEARWGLDWMLRLHPGPSQLYHQVADDRDHAGWRLPQKD
                     TVDYGWGPGLYRVVYFADGRPQGLRQYKSASDGVANLAGRYAAAMALGYQVWKGDPRQ
                     RAYAERLLRAGREAYELGRADEGVQQGNSYGAPYRYEETTWADDMEWGAAELLRATGE
                     RRYLEDAKRYALRAASESWMGREQAGHYQFYPFINVGHFRLHGLVDKNFQRALAGYYR
                     EGIEACARAGRGNPYEVGVPFIWCSNNLTVALATQCLLYERMTGDGRFGGFASKQRDW
                     LLGRNPWGFSMFTEIPEGGAYPKDVHLFANTLLKKGVRGGLVDGPVYARIFRSLKGVS
                     VTEPDPLAPFQDERAVYHDDVKDYSTNEPTMDGTASAILLWALLAGETAR"
     gene            complement(2034..>2889)
                     /locus_tag="VD968_18810"
     CDS             complement(2034..>2889)
                     /locus_tag="VD968_18810"
                     /inference="COORDINATES: protein motif:HMM:NF013292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase"
                     /protein_id="HYE16496.1"
                     /translation="DPADDSVGYGGLPNAEGVVQLDASCMHGPTKRAGAVAALEGVRT
                     PSLVAKAVLEMTDHHLIVGRDAQKFARQLGFKIEDDLNTENSRRLWLEWKRRTDPSHY
                     LDPKTRAEVWRREGLRMVAEGLVRAEHYYGTINCNAVNARGEIAGVTTTSGLSWKIPG
                     RVGDSPILGAGLYVDGSVGAAGSTGRGEANLFNLCSFLIVEEMRRGRSPKDAGMEALR
                     RIRANTVEKRLLNKEGNPAFGINFYAVNARGEHAGVTMYQGARYAVCTEAGPQTLACE
                     PLLPKPAG"
BASE COUNT          429 a          993 c          996 g          471 t
ORIGIN      
        1 tacggccgcg agatgggccg ccacgccctc gacctctaca cgcagatcaa gagcgtctgg
       61 gttgacctgt cgggcaagcc catcggctgg ttcggcaact aagcgccggc cgcggaagac
      121 ggcggcacgg gcgcggcgac acgtcggttg acgttgtcgc cgcgcccact ttctttagcg
      181 ccaaacatga ggcgatcaat tcgttcgagc gtgtcggcgt gcctcgccct cctggccctc
      241 ctgccgctcg cggtggctca gacgcctggc gcagccgagg gcgcgcgggt cttcgtccgc
      301 gtcaaccagg tcggctatct cacttcgggc gcgaaggtgg ccgtcgcctt cgcgcgcgag
      361 cctctgccgg agggcttcac cgtcgttgac gcggcgacgg gcaagaccgt cttcgaggga
      421 gccgcgagac aggttcatgg ctcgtggggc gaattcgctc accacgccga gctggacttc
      481 tccccgctga agaggccggg ccgttttttc gtgcgcgtcg gcccggcgca gtctcagccg
      541 ttcgccgtcg gccccggcgc ttactccggc ctgccggatc agctgctcga attcatgcgc
      601 cagcagcggt gcggctacaa cccctggctc gacgccgtct gccacccctt tgacgggcgc
      661 acggcctacg gccctctgcc cgcaggcacg tacctagacg cgacgggcgg ctggcacgac
      721 gcgggcgacc aactgaagta cctgctcact tcgagtaacg cgacggcgca gatgctcctc
      781 gcctacgtgc tcggggagga ggagggccgc cgcgcaggga agcccggccg cgcgttcttc
      841 cgcgacgact tcaacgaact ggggcagccc ggcgcgaacg gcacggcgga catactcgac
      901 gaggcgcgct ggggcctgga ctggatgctc aggctccacc ccggcccctc gcagctttac
      961 caccaggtcg cggacgaccg cgaccacgcc ggctggcggc tcccgcagaa ggatacggtt
     1021 gattacggct gggggccggg cctctatcgc gtcgtctatt tcgccgacgg caggccgcag
     1081 gggctacggc agtataagag cgcgtcggac ggagtcgcca acctcgcggg ccgctacgcc
     1141 gccgcgatgg cgctcggcta ccaggtttgg aagggcgacc cgcggcaacg cgcctacgcc
     1201 gagaggctcc tgcgcgcggg gcgggaggct tacgagctgg gccgcgccga cgagggcgtg
     1261 cagcagggca actcctacgg cgcgccgtac cgctacgagg agacgacctg ggccgacgac
     1321 atggagtggg gcgccgccga gcttctgcgc gccacgggcg agcggcgcta cctcgaagac
     1381 gcgaagcgct acgcgctacg cgcggcgtca gagtcctgga tggggaggga gcaggcgggg
     1441 cattaccagt tctacccctt cattaacgtc ggccacttcc gcctccacgg cctcgttgac
     1501 aagaacttcc agcgggccct ggccggctac taccgggaag gcatcgaagc ttgcgcgcgc
     1561 gcggggcgcg gcaaccctta cgaagtcggc gtgcctttca tctggtgctc gaacaacctg
     1621 acggtcgcgc tcgccacgca atgcctgctc tacgagcgca tgaccggcga cgggcgcttc
     1681 ggcggcttcg cgtcgaagca gcgcgactgg ctcctgggca gaaacccctg gggcttctcg
     1741 atgttcacag agatacccga gggcggcgcc tacccgaagg acgttcacct gttcgccaat
     1801 acgctgctga agaagggcgt gcggggcggg ctggtggacg ggccggttta cgcgagaatc
     1861 tttcggagcc tgaagggcgt ttccgtcacc gagcccgacc cgctcgcccc ctttcaggac
     1921 gagcgggccg tctatcacga cgacgttaag gactactcca ccaacgagcc tacgatggac
     1981 ggcaccgcct ctgccatcct cctctgggcc ctactcgccg gggagaccgc tcgttaaccg
     2041 gccggcttcg ggagcagcgg ctcgcaggcg agggtctgcg ggccggcttc ggtgcagacg
     2101 gcgtagcggg cgccctggta catggtgact ccggcgtgct cgccgcgggc gttgaccgcg
     2161 tagaagttga tgccgaaagc ggggttgccc tccttgttga gcaaccgctt ctcgacggtg
     2221 ttcgcgcgga tgcggcgcag ggcttccatc ccggcgtctt tgggcgagcg cccccgccgc
     2281 atctcctcga cgatgaggaa cgagcagagg ttgaagaggt tagcctcgcc gcggcccgtc
     2341 gagcccgccg cgcccacaga gccgtcaacg tataggccgg ctccgagtat gggcgagtcg
     2401 ccgactcggc ccggtatctt ccaggagagc ccgctggtcg tcgtcacgcc cgctatctcg
     2461 ccgcgggcgt tgacggcgtt gcagttgatc gtcccgtagt agtgctcggc cctcaccaac
     2521 ccttcggcca ccatcctgag cccctcgcgt cgccagactt cggcgcgcgt cttcgggtcg
     2581 aggtagtgcg aagggtccgt gcggcgtttc cattcgagcc agaggcggcg cgagttctcg
     2641 gtgttcaggt cgtcctcgat tttaaacccg agctgccgcg cgaacttctg cgcgtcgcgg
     2701 ccgacgatga ggtggtggtc tgtcatctcg agcacggcct tcgccactag cgagggcgtg
     2761 cggacgcctt cgagggcggc gacggcgccg gcgcgcttcg tcgggccgtg catgcacgag
     2821 gcgtcgagct gcacgacccc ctcggcgtta ggcagcccgc cgtagcccac gctgtcgtcg
     2881 gccgggtcg
//
LOCUS       DASPKR010000718         9394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1411795, whole genome shotgun sequence.
ACCESSION   DASPKR010000718 DASPKR010000000
VERSION     DASPKR010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9394)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9394
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1411795"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(145..2634)
                     /locus_tag="VD968_18815"
     CDS             complement(145..2634)
                     /locus_tag="VD968_18815"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16497.1"
                     /translation="MGDLWKDLRYGMRVLWKSPGFTAVAVFTLALGIGANTAIFSSVS
                     AFILRPLPAVGDPGSLVRVFEAGGGGAGGPHGDLVDSFSYPDYVDYRDRGGEAFEGLL
                     IHRLEQAALSTTERNDLVWGELVSGNYFDVLKVRPALGRGFLPDEDKAPGARAVVVIS
                     HNLWRNRFASDPSVVNRAVTFNGQPFTVVGVAPKGFTGTKFGLAMDFWAPIMMQEQVT
                     REGRWIEERGDHRLEIIGRLKEGVTREQAEAALTSVASYLAETYPAERAEGVRVVVKP
                     EIEGRYEEMAGVVKLGSAVALGAVGLILLIACANVANLLLARAASRRREIGIRLALGA
                     SRGRVVRQLLTESVLLSALAGVVGLLLAFWAADLLRASIPVLPYTVALDFTPDTRALL
                     FTLAVSLLTGIVFGLAPALQSSRPDIVPVLKNEPAGLKAGRRRLTLRNGLVVVQVALS
                     LVVLVCGGLLVKSFWRARSIDPGFQTDRGLGLSVNPSLLGYDGERGKIFFRQLAERVG
                     ALPGVESVSVARYLPLGDSSSSTGPVIAEGQPVPEPGRGISTLYNVVSSGYFDTLRTP
                     FVAGRDFSAEDRESGRRVVIINQALAERLWPGERDVVGKRLRVGGAEGTRQREVVGVV
                     KTGRYRTLAESPRPMMYIPLEQGFDAGGMMLLARSSGDPKTLINSVQQEVRALDPRLP
                     VYGVRTFEEHMTWALWGTRLAASLSLAVGLLALVLAASGLYSVMAYTVSQRTHEIGIR
                     IALGAQGSDVLRLVAGHGMALTAVGVAAGLAASFAVTRVLAGILYGVSATDAVTFAAI
                     SLLLALVSFLACYLPARRAARVDPMEALRYE"
     gene            complement(2646..5042)
                     /locus_tag="VD968_18820"
     CDS             complement(2646..5042)
                     /locus_tag="VD968_18820"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16498.1"
                     /translation="MTTLLQDLRHGLRLLLKQPGFTLVAVVTLALGIGANTAIFSVVN
                     GVLLKPLPYPAPERLLTARQNISLLNLEDIRAQARSYEASGGAVLQQLDYTGGGEPVQ
                     VEAALFTHEALEVLGARAVVGRAIRPEEERTGGERLALVSYGFWQRQLGGRDIEGMTI
                     PLSGQTYSVVGVLAPSFAPPHGSPDVWASLRVVNPIAAEHRGVHFLRTYWRLKAGVEQ
                     AEAQAELDTIGGRLAQAYPDENKNRRFALMSLQERMVGDVRPALLVLFGAVGLVLLIA
                     CANFANLLLARAASRAQEMAVRTALGAGRLRIVRQMLTESVLLALAGGAGGLALAVWG
                     VDALLALAPESLPRAADVRIDAGVLLFTLGVSVLTGLVFGLAPAWRASRANLSDALKE
                     GGRGDSGGGLARQRLRSTLVVVELAMALVLLVCAGLLIKAFWRLRQVEPGFVTAGLLT
                     MRVELPEARYKEIPAQTEFRRRALEALNSLPGAEAAMVSELPLTDDALHHDFVIDGRP
                     PVAPGDEPSLYSRSVGGEYMKVMRIPLRAGRELSAGDDANAPAVGVVNESFARRYFPG
                     ESPLGARVRWARMEPAEWITIVGVVGDVKHFGLDQPEEPALYTPYAQSRQAWKRWMHL
                     VVRSDEAPATLARAVKSKVWSVDPQIPVTKVLTMTEVSAASVGRQRFNMTLLGVFASV
                     ALLLAAVGIYGVISYGVTQRTREIGVRMALGAQTGDVLRLVLGQGTLLALAGVALGLA
                     GAFALSRLLASLLFGVSTKDPSVYALVSAVLVAVALLATYFPARRATKVDPMTALRYE
                     "
     gene            complement(5065..7500)
                     /locus_tag="VD968_18825"
     CDS             complement(5065..7500)
                     /locus_tag="VD968_18825"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16499.1"
                     /translation="MRTLLNDVRFALRRLAKSKGFTAVAVASLALGIGANVAIFSVVN
                     AVLIRPLPFPEAERLVMVWEDNSALGFPRDTPAPANYADWKAQNQSFEDMAALATRSF
                     NITGDGEPEKVSAYRVTANLFGVLGVRPAVGRAFNEEDDRPGAAKVVILNYGLWQRRY
                     GGERSVVGRDILLDGEKHTVVGVMPKGFQFMESYTGLWVPAAFTPEEMAARGSHYLVV
                     VARMKPGVSAEQAHADVAAITERIAREFPAQAQNLKAAVVPLREQITGNTRRPLILLL
                     AAVALVLLIACANVANLLLARSASRRKEMAVRTALGASRARVVRQLLTESVLLSVLGG
                     AAGLLLAAWGFEFLKKLIPDGMTLSSSLTIDLPVLGYALGVSLLTGIVFGLAPALQSS
                     RVELNEALKQGGGRSASGGGGGRLRSALVVVEVALALVLLVGAGLLVQTVSNLRYQYA
                     LFEPERLLTVRTVLPQRKYTGAAQRANFYDRVLERVRALPGVVSAGYTTSVPLQWKGG
                     ANGLFLEGVQLPPGVFANANHRQVSAGYLQTMGIPLREGRYIEETDDARALPVVVVNE
                     TMARQYWQGQSAVGRRLKFGPDESADDPWRTVVGVVADVRQMGLDAPVKAEAYYPYKQ
                     ITTHPFFAPRDLVVRAEAGDPLSLVPAVRREVHAVDPDQPLSSVATMDKVLGDETGSR
                     GTGMVLLAALAGLAVLLAAIGIYGVLAYFVTQHVPEIGVRLALGARPRDILALVLRKG
                     MGLALGGVLAGLAAAYALTRLMESLLFGVSATDPLTFGGLALLLAAVALVACVVPARR
                     ATRVDPMTALRYE"
     gene            complement(7514..>9394)
                     /locus_tag="VD968_18830"
     CDS             complement(7514..>9394)
                     /locus_tag="VD968_18830"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16500.1"
                     /translation="GFQWFVRKSSFAGRPADMWATFGWTEQHRVRRGRYMSAVARLKD
                     GVTREEAQTELDHLAARFEAQYPDFNTNWGVSVVSLREQFSGQIGPALWVLLGAVGFL
                     LLIACANVANLLLARSATRQKEIAIRTALGAGRARVLRQLLTESLLLALVGGLVGLLL
                     AVWGVEALAALSPRDLLDAGGVRVNLPVLGFTLGVTLLTSLFFGVAPSLVATRSGSNE
                     TLKEGGRGGTSGRRRNRLRNAFVITEVALAMMLLVGAGLMLRSFARLQAVEPGFNPDK
                     LLTMRVVLPDPKYPEEHQRVAFFRQALERISALPGVESAGAATFLPFSGSNTATRFSI
                     VGRPEPPRGQEPGTDVRSTDVNFFRTLGIPLLRGRLYDEREAAEARRVVVINESLARK
                     YFPDEDPLGKSIKVNIFAGEPRATEIIGIVGDAKHASLEGEASPTVYFPHSELPMPFM
                     YVAVRTEGDPSGSAAAVRREIQSIDPDQPVADVRTMTELLADSVGRARFSATLLAVFA
                     SVALLLAAIGIYGVISYGVTQRTHEIGIRLALGARAADILWMILGQGLGLAAAGLATG
                     LVGAFAVTRLMTSLLYGVSATDPLTYAALSLFLLLVALAACYVPARRATRVAPTIALR
                     YE"
BASE COUNT         1517 a         3320 c         3284 g         1273 t
ORIGIN      
        1 acgtccgagg gcgacgcgac ggcctttatc tcgtagccct cgggcttcaa gagcagccgc
       61 agcgcctcta ccacggctgg ctggtcgtcg gcgatgagaa ctctcggcat aagtgatcag
      121 ccaaatcagt ggtaacgctt atcgctactc ataccgcagc gcttccatgg ggtcaacgcg
      181 cgcggcgcgc cgggccggta ggtagcacgc gaggaaggag acgagcgcga gcaggagcga
      241 gatggcggcg aaggtcacgg cgtccgtggc cgacaccccg tagagtatgc cggccagcac
      301 gcgcgtcacg gcgaacgagg cggcgagccc cgccgcgacc cctacggccg tgagcgccat
      361 cccgtggccc gcgacgaggc gcagaacgtc cgagccttgc gcgccgagag cgatgcggat
      421 gcctatctcg tgcgtgcgct gcgagaccgt gtaggccatc acgctgtaga gccccgacgc
      481 cgcgagcacg agcgccagaa gccccacggc gagcgagagc gacgcggcga ggcgcgtccc
      541 ccacagcgcc cacgtcatgt gctcctcgaa cgtgcgcacg ccgtaaacgg gcaggcgcgg
      601 gtcgagcgcg cgaacctcct gctgcacgga gttgattaga gtcttcgggt cgcccgaaga
      661 gcgcgcgagc agcatcatgc cgccggcgtc gaagccctgc tccaggggga tgtacatcat
      721 cgggcggggc gactcggcca gcgtgcggta gcgcccggtc ttgacgacgc ccacgacctc
      781 gcgctgcctc gtcccctcgg cgccgcccac gcgcaggcgc tttccgacca cgtcgcgctc
      841 gcccggccag aggcgctcgg cgagcgcctg gttgatgatg acgacgcggc ggccgctctc
      901 gcggtcttcg gcgctgaagt ctcggcccgc gacgaacggc gtgcggagcg tgtcgaagta
      961 gccggagctt acgacgttgt agagcgtgct tatccctcgc cccggctcgg ggacgggctg
     1021 cccctcggcg atgacggggc cggtcgagct agagctgtcg ccgagcggga ggtagcgcgc
     1081 cacgctcact gactcgacgc cgggcagggc gccgacgcgc tcggcgagct ggcggaagaa
     1141 aatcttgccg cgctcgccgt cgtagccgag caggctcggg ttgacggaga ggccgaggcc
     1201 gcggtcggtc tggaagcccg ggtcaatgga gcgcgcgcgc cagaagctct tgacgagcag
     1261 gccgccgcag acgagcacga cgagcgagag cgcgacctgc acgacgacga gcccgttgcg
     1321 gagcgtgagc ctgcgccgcc cggccttgag gcccgccggc tcgttcttga gcacgggcac
     1381 gatgtccggc ctcgaagact gcaaggcggg cgcgagcccg aacacgatgc ctgtcagaag
     1441 cgacaccgcc agcgtgaaga ggagggcgcg cgtgtccggc gtgaagtcga gcgcgacggt
     1501 gtaaggcaag acgggtatcg aagccctcag caggtcggcc gcccagaagg cgagcagcag
     1561 gccgaccacg cccgcgagcg cggatagtag cacgctctcc gtcaaaagct gccgcacgac
     1621 gcggccgcgg ctggcgccca aagcgagcct tatgcctatc tccctccggc gcgacgcggc
     1681 gcgcgcgagc aggaggttag cgacgttggc gcacgcaatc agcagtatta gcccgacggc
     1741 gccgagcgcg acggccgagc cgagcttgac tacgccggcc atctcctcgt agcgcccctc
     1801 tatctcgggc ttgacgacga cgcgcacgcc ctcggcgcgc tcggccgggt aagtctccgc
     1861 gaggtaagag gcgaccgagg tgagcgccgc ctcggcctgc tcgcgggtga ctccctcctt
     1921 gaggcggccg atgatttcga gccggtggtc gcctcgctcc tctatccagc gcccctcgcg
     1981 cgtcacctgc tcctgcatca tgatgggcgc ccagaagtcc atcgccagcc cgaacttcgt
     2041 ccccgtgaag cctttgggcg cgacgccgac gaccgtgaac ggctggccgt tgaaggtgac
     2101 ggcgcggttt acgaccgacg ggtcggacgc gaagcggttg cgccagaggt tgtggcttat
     2161 gacgacgacg gcgcgcgcgc ccggcgcctt gtcctcgtcc ggcaggaagc cccggccgag
     2221 cgcgggccga accttgagca cgtcgaagta gttgccgctg acaagctcgc cccacactag
     2281 gtcgttgcgc tcggtcgtgc tcagggccgc ctgctcaagg cggtgaatca ggaggccctc
     2341 gaaagcctcg ccgccccggt cgcggtagtc aacgtagtcg gggtaggaga agctgtccac
     2401 caaatcgccg tgcggcccgc cggccccgcc cccgcccgcc tcgaagacgc gcacgagcga
     2461 gccggggtct cccacggcgg ggagcggccg cagtatgaat gcgctcaccg agctgaagat
     2521 ggcggtgttt gcgccgatgc ctaaggcgag cgtgaagacc gccacggccg tgaagcccgg
     2581 cgacttccac agcacgcgca tcccgtagcg caaatccttc cacaagtcgc ccatcactaa
     2641 acctctcatt cgtatcggag cgcagtcatc gggtcaacct tcgtcgcgcg ccgcgccggg
     2701 aagtacgtgg cgagcagcgc gacggcgacg agcacggccg agaccaaagc atatacggac
     2761 gggtctttag tcgagacgcc gaacaggagg ctcgcgagca ggcgcgacag cgcgaaggcc
     2821 cccgcgagcc ccagcgccac acccgcgagc gcgagcagcg tcccctgccc cagcacgaga
     2881 cgcagcacgt cgcccgtctg cgcgccgagc gccatcctca cgcctatctc gcgcgtgcgc
     2941 tgcgtgacgc cgtaggagat gacgccgtaa atccctacgg ccgccagcag cagcgcgacc
     3001 gaggcgaaga cgccgagcag cgtcatgttg aatcgctgcc tgccgaccga cgccgcggag
     3061 acttccgtca tcgtcagaac cttcgtcacg ggaatctgcg ggtcaaccga ccagaccttc
     3121 gacttgacgg cgcgcgccag cgtcgcaggc gcctcgtcgc ttcggacgac gaggtgcatc
     3181 cagcgcttcc acgcctggcg cgactgcgcg tagggcgtgt agagggccgg ctcctcgggc
     3241 tggtcgaggc cgaagtgctt cacgtcgccg acgacgccga cgattgtgat ccactcggcc
     3301 ggctccatcc tcgcccagcg gacgcgcgcg cccagagggc tctctccggg gaagtaccgg
     3361 cgggcgaagc tctcgttgac gacgccgacg gccggggcgt tcgcgtcgtc gcccgccgag
     3421 agctcgcgcc ccgcgcgcaa ggggatgcgc attactttca tgtactcgcc gccgacgctg
     3481 cgcgagtaga ggcttggctc gtcgccgggc gcgacgggcg ggcgcccgtc aatgacgaag
     3541 tcgtggtgga gggcgtcgtc cgtcaggggc agctcgctca ccatcgcggc ctcggcgccg
     3601 ggcagagagt tcagggcttc gagggcgcgg cggcggaact ctgtctgcgc cggaatctcc
     3661 ttgtagcgcg cctcgggcag ctcgacgcgc atcgtcagca gccccgccgt gacgaagccc
     3721 ggctcgacct gacgcagccg ccagaaggct ttgattaaga gccccgcgca gaccaggagc
     3781 acgagcgcca tcgccagctc gacgacgacg agcgtgctgc gcaaacgctg ccgcgcgagc
     3841 ccgccgcccg agtcgcccct cccgccctcc ttgagcgcgt cgctcaggtt cgcgcgcgag
     3901 gccctccatg cgggcgcgag cccgaagacg agccccgtca gcaccgagac gccgagcgtg
     3961 aagagcagca cgcccgcgtc aatccgcacg tcggccgcgc gcggcaggct ctcgggcgcg
     4021 agcgcgagca gcgcgtccac gccccacacg gcgagcgcga ggccgcccgc gccgcccgcg
     4081 agcgcgagca gcacgctctc cgtcagcatc tgccgcacga tgcgcaggcg ccccgccccg
     4141 agcgccgtgc gcacggccat ctcctgcgcg cgcgaggcgg cgcgggcgag cagcaggttc
     4201 gcgaagttcg cgcacgctat cagcagcacc agcccgaccg cgccgaagag gacgagcagc
     4261 gcgggccgca cgtcgcccac catccgctct tgcagggaca ttagcgcgaa gcgccggttc
     4321 ttgttctcgt ccgggtaggc ttgggcgagg cggcccccga tggtgtcgag ctcggcctgc
     4381 gcctcggcct gctcgacgcc cgccttcagc cgccagtaag tccgcaggaa gtggacgccg
     4441 cggtgctcgg ccgcgatggg gttgacgacc cgcagagagg cccaaacgtc cggcgagccg
     4501 tgcggcgggg cgaacgaggg cgccagcacc cctacgaccg agtaggtctg cccgctcagc
     4561 ggtatcgtca tcccctcgat gtcgcgcccg ccgagctgcc tctgccagaa gccgtagctc
     4621 accagggcga gccgctcgcc gcccgtccgc tcttcctccg gccgtatcgc gcgccccacc
     4681 acggcgcgcg cgccgaggac ttcgagcgcc tcgtgcgtga agagggcggc ctcgacctgc
     4741 acgggctcgc cgccgcccgt gtagtcgagc tgctggagga ctgcgccgcc cgacgcctcg
     4801 tagctgcggg cctgcgccct tatgtcttcg aggtttaaga gcgagatgtt ctgcctcgcc
     4861 gtcagcaggc gctccggcgc ggggtaaggc agcggcttga gcagcacgcc gttgacgacg
     4921 gagaagatgg ccgtgttggc gccgatgccg agggcgagag tcacgaccgc cacgagggtg
     4981 aagccgggct gctttagcag cagccgcagg ccgtgccgca ggtcttgcag tagagtcgtc
     5041 atcgtcgttt cactcctccg acggtcactc gtatcggagc gcagtcatcg ggtcaacgcg
     5101 cgtggcgcgt cgcgcgggga cgacgcaggc gacgagcgca acggccgcga gcaggagggc
     5161 gaggccgccg aacgtcagcg ggtctgtggc ggagacgccg aacagaaggc tctccatcag
     5221 ccgcgtgagc gcgtaggccg cggccagccc cgcgagcacg ccgccgagcg ccaggcccat
     5281 ccccttcctc agcacgagcg cgagtatgtc gcgcggcctc gcgcccaggg cgagccgaac
     5341 gcctatctcc ggcacgtgct gcgtgacgaa gtaggcgagc acgccgtaga tgcctatcgc
     5401 cgccagaagc accgcgagcc ccgcgagcgc ggctagcagc accatcccag tcccgcgcga
     5461 gcccgtctcg tcgccgagca ccttgtccat cgtggcgacg gaggagagcg gctgatccgg
     5521 gtcaacggcg tgaacctccc ggcgcacggc cgggacgagc gagagcgggt cgcccgcctc
     5581 ggcgcgaacc accaggtcgc gaggcgcgaa gaaggggtgc gtcgttatct gcttgtaggg
     5641 gtagtaggcc tcggccttga cgggcgcgtc caaacccatc tgcctcacgt cggcgacgac
     5701 gccgaccacc gttcgccacg ggtcgtccgc cgactcgtcg gggccgaact tgagccggcg
     5761 gccgacggcg ctctgcccct gccagtactg ccgggccatc gtctcgttca cgacgacgac
     5821 ggggagggcg cgcgcgtcgt ccgtctcctc gatgtagcgc ccctcgcgca ggggtatgcc
     5881 catcgtctgg aggtagccgg cgctcacctg cctgtggttg gcgttggcaa agacgccggg
     5941 gggcagttgc acgccttcga ggaagaggcc gttggcgccg cccttccact gcaaggggac
     6001 ggacgtcgtg tagccggccg agactacgcc cggcagggcg cgcacgcgct cgagcacgcg
     6061 gtcgtagaag ttcgcgcgct gcgcggcgcc cgtgtacttg cgctgcggga gcacggtgcg
     6121 caccgtgagt agccgctcgg gctcgaagag cgcgtactgg tatcggaggt tcgagaccgt
     6181 ctgcacgagc agcccggcgc cgacgagaag gacgagcgct agtgcgacct ccacgacaac
     6241 gagcgccgag cgcaggcgcc cgcccccgcc gcccgaagcc gagcggccgc cgccctgctt
     6301 gagcgcctcg ttcagctcga cgcgcgaaga ctgcaatgca ggcgcgagcc cgaacactat
     6361 ccccgtcagg agcgaaacgc cgagcgcgta gccgagcacg ggcaggtcaa tcgtgaggct
     6421 cgaagagagc gtcatgccgt ccggtatcag cttcttcaga aactcgaagc cccacgccgc
     6481 gagcagaagc cccgccgcgc cgccgagcac cgagagcagc acgctctccg tcaaaagctg
     6541 ccgcacgacg cgtgcgcggc tcgcgccgag agccgtgcgc acggccatct ccttgcgcct
     6601 cgaagccgag cgcgctagca ggaggttggc tacgttggcg cacgcaatca aaagcaccag
     6661 cgcgaccgcc gccagtagaa ggatgagcgg ccggcgcgtg ttgcccgtta tctgctcgcg
     6721 cagcgggacg accgccgcct tcaggttctg cgcctgcgcg gggaactcgc gcgcgatgcg
     6781 ctccgttatg gcggcaacgt ccgcatgtgc ctgttcggcc gagacgcccg gcttcatgcg
     6841 cgcgacgaca acgaggtagt ggctgccgcg cgccgccatc tcctcgggcg tgaaggccgc
     6901 gggcacccag agccccgtgt agctctccat gaactggaag cctttgggca tgactccgac
     6961 gacggtgtgc ttctcgccgt cgagcagtat gtcgcggccg acgacggagc gctcgccgcc
     7021 gtagcgccgc tgccacaggc cgtagttcag gatgacgacc ttcgctgcgc cgggacggtc
     7081 gtcctcctcg ttgaaggcgc ggccgacggc cgggcgcacg ccgagcacgc cgaagaggtt
     7141 cgccgtcacg cggtaggccg agaccttctc gggctcgccg tcgcccgtta tgttgaagct
     7201 gcgcgtggcg agcgcggcca tgtcctcgaa ggactggttc tgcgccttcc agtcggcgta
     7261 gttggccggg gccggcgtgt cgcgcgggaa gccgagcgcc gagttgtcct cccagaccat
     7321 caccagccgc tccgcttcgg ggaacggcag cggccttatc agcacggcgt tgacaaccga
     7381 gaagatggcg acgttcgcgc ctatgcctaa agcgagcgac gcgaccgcga cggccgtgaa
     7441 ccccttgctc ttcgccagac ggcggagcgc gaaccgaacg tcattcagca gagttctcat
     7501 aaccgcacct cactcactcg taccggagcg cgatggtcgg cgccacgcgc gtcgcgcgcc
     7561 gcgcagggac gtagcaggcc gcaagcgcga ccagcagcag gaagagcgag agcgccgcgt
     7621 aggtcagagg gtctgtcgcc gacaccccgt agagcaggct cgtcatcagc cgcgtgacgg
     7681 cgaaggcgcc caccaggccg gtcgccagcc ccgcggccgc gagcccgagc ccctgcccca
     7741 gaatcatcca gagtatgtcg gccgcgcgcg cgccgagcgc cagccttatg cctatctcgt
     7801 gcgtgcgctg cgtcaccccg taggagatga cgccgtagat gcctatggcc gccagaagca
     7861 gggcgaccga ggcgaagacg gcgagcagcg tcgcgctgaa gcgcgcgcgg cccacggagt
     7921 cggccagcag ttcggtcatc gtccgcacgt cggcgaccgg ctggtccggg tcaatggact
     7981 gaatctcgcg gcgcacggcg gcggccgagc ccgaggggtc gccctccgtc ctcacggcga
     8041 cgtacatgaa gggcatcggc agctccgagt gcgggaaata gacggtgggc gaggcctcgc
     8101 cctcgaggct cgcgtgcttg gcgtcgccga ctatgccgat tatctccgtg gccctcggct
     8161 cgcccgcgaa tatgttgacc ttgatgctct tgccgagcgg gtcttcgtcg gggaagtatt
     8221 tgcgcgcgag cgactcgttg atgacgacga cgcggcgggc ctccgcggcc tcgcgctcgt
     8281 cgtagaggcg gccgcgcagt agcgggatgc cgagcgtgcg gaagaagttt acgtccgtcg
     8341 agcgcacgtc ggtccccggc tcctgccccc gcggcggctc ggggcggccg actatgctga
     8401 aacgcgtagc cgtgttagag cccgagaagg gcaggaacgt ggcggcgccg gccgactcca
     8461 cgcccggcag cgcggagatg cgctcgagcg cctgcctgaa gaaggcgacc cgctggtgct
     8521 cctccgggta cttcgggtcg ggcagcacga cgcgcatcgt caaaagtttg tcggggttga
     8581 agccgggctc gaccgcctgg aggcgcgcga agcttctgag catgaggccg gcgccgacga
     8641 gcagcatcat ggcgagcgcg acctccgtga tgacgaaggc gttgcgcagg cggttgcggc
     8701 ggcggcccga ggtcccgccc ctgccgccct ccttgagcgt ctcgttcgag cccgagcgcg
     8761 tcgccacgag cgagggcgcc acgccgaaga agagcgaggt cagaagcgtc acgcccagcg
     8821 tgaagccgag cacgggcagg ttgactcgga cgccgcccgc gtcgagcagg tcgcgcgggc
     8881 tcagggcggc cagcgcctcc acgccccaga cggcgagcag caagcccacc agcccgccga
     8941 cgagcgcgag cagtaagctc tccgtcagaa gctgcctgag cacgcgcgcg cgccccgccc
     9001 cgagcgccgt gcggatggct atctccttct gcctggtcgc cgagcgcgcg agcaaaaggt
     9061 tggcgacgtt ggcgcacgcg attaagagca ggaagccgac ggcgcccagg agcacccaca
     9121 gcgccggccc tatctggccc gagaactgct cgcgcagcga cacgacgctc accccccagt
     9181 tcgtgttgaa gtccgggtac tgcgcctcga accgcgcggc caggtggtcg agctccgtct
     9241 gcgcctcctc gcgcgtgacg ccgtctttga ggcgcgcgac cgcgctcatg tagcgcccgc
     9301 ggcggacgcg gtgctgctcc gtccagccga aggtcgccca catgtcggcg ggcctgccgg
     9361 cgaaggagct tttgcggacg aaccactgga agcc
//
LOCUS       DASPKR010000719         5196 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_635685, whole genome shotgun sequence.
ACCESSION   DASPKR010000719 DASPKR010000000
VERSION     DASPKR010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5196)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5196
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_635685"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     regulatory      348..443
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01051"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-GMP riboswitch class I; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="cyclic di-GMP"
                     /db_xref="RFAM:RF01051"
     gene            759..1820
                     /gene="pilM"
                     /locus_tag="VD968_18835"
     CDS             759..1820
                     /gene="pilM"
                     /locus_tag="VD968_18835"
                     /inference="COORDINATES: protein motif:HMM:TIGR01175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus assembly protein PilM"
                     /protein_id="HYE16501.1"
                     /translation="MFRKNLGKKGLVGLDIGSSSVKAVELQGKPGSLQLVNLGFESLQ
                     PDTVVDGQIMELNDVSHVISGLFSSRQFKTERVAAGVSGSSVIVKNIVVPQMTRDELE
                     ESIDWHAEEHIPFEISDVNLDYQVVGSGHDSLQVLMAACKRDSIANLKQAIQLAGKQP
                     AVIDVDAFALQNCYEINYQPPEGLVVALLNVGASTMNINIVKGVRSVFTRDVSVGGNQ
                     YTALLQKELGLTYEQAEAVKRGAAAPSHVEAAEIDGILETVSEMLGLEISKTFDFYRA
                     TADEGDEAVQKILLSGGGSKLKGLPEYLSNRFEMPVERLDPFRHVKVDARRFDPDYMR
                     EVVPEMAVAVGLALRGVDA"
     gene            1821..2507
                     /locus_tag="VD968_18840"
     CDS             1821..2507
                     /locus_tag="VD968_18840"
                     /inference="COORDINATES: protein motif:HMM:NF016992.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HYE16502.1"
                     /translation="MIKVNLLNSVTDKARGPVAVEQKVTSPSARVWMLGASVFALMAL
                     VMIFDYVSAGTARDAAQAELERQQQIAAQMASINKEQAELEKKIKDIQYRIDAIKKLR
                     ASQQGPVALLSEINGRIPAEPNFRLESIEQKGGELTIEGHSPNEYAVTQFGRGLEFSS
                     GVFANVSMEMERKPVEFNPADYDPSEGPFDLSVKPETVKFKIKCRYTPASPAPGQPAP
                     GAPANQVASK"
     gene            2551..3231
                     /gene="pilO"
                     /locus_tag="VD968_18845"
     CDS             2551..3231
                     /gene="pilO"
                     /locus_tag="VD968_18845"
                     /inference="COORDINATES: protein motif:HMM:NF016253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA];
                     GO_process: GO:0043683 - type IV pilus assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HYE16503.1"
                     /translation="MSRFGNIQEKPWYVQVALFGGVALLLYLGFWYFVTSGKRAETRE
                     IEEKVAQLQRDNARAQIASQRLTEFKANFERVQADYEDLKALLPEQRELTLVLQNLQD
                     RARGRLTLRRFTPKEDVQQDFYSGKQVEVAVTGTYNNVGQFFAQLATYQRIVSITDFK
                     VSKLKEANAPLDKREGKTVDAQFLLTAYYVSPDKLKPGAAAPAQPAQQPAAPAPAGAQ
                     APAPTAAK"
     gene            3262..4212
                     /locus_tag="VD968_18850"
     CDS             3262..4212
                     /locus_tag="VD968_18850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16504.1"
                     /translation="MKDGREQTPKAFYRALAAFALALGFAQAASAQVTSTSYRGTARD
                     PFVKYRPPVPRKVEKKVNGPIQPPPIRARIENYKAQKLAAMNLQQPAPKPTTALLLSE
                     VQVTGIFRTPRGYAAMVEATPIKLSYVVYPGEAFYDGMLVAIEETRLVFRKQTRWTDG
                     RVEVSVDTKSLRQPNAYADSLTTQRGMASGVAAEAGANSPDALVATFRDAHSSRDLDA
                     VTKLFNLDGADDDTKRVVNGLVMYLSGMKLADVQFVTPSRNVSHDYTIRGVKYKFDTP
                     SVGDFVITVEAENQAKIPLVLPVGLKDGKYFLSTGRPEQK"
     gene            4435..>5196
                     /locus_tag="VD968_18855"
     CDS             4435..>5196
                     /locus_tag="VD968_18855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16505.1"
                     /translation="MAYIRTKLRAATRVPLVLSLVCLLCTAALGAAPGGAGYPVARSV
                     RAVTSGGVTLITVSGTAPMPHSVRRPEEGLLVVDLPGVDASQLAETYGVVSPLVAGVS
                     VRRALKGSEPVASLHVRLLAPVRERANLVGNDLMLELTPAEKGAAASASGASVSAEAQ
                     GQPTPAPQNGQPQLSQGQQYGSPGFVGEPINLNVVNADIRDILNYITEQYGVNFVVDA
                     SVERVPVTINVTEVPWNFALNSILKANRLGIEVNGN"
BASE COUNT         1011 a         1776 c         1635 g          774 t
ORIGIN      
        1 gtcgtcatac gctgtgcatc gtaactttcg cacacgcgcc aggcaaggcc gacacagaga
       61 cgaaaagcgc cccgcgcgcc ggcccagcac tcgctctgat tcccggccag aagtagaaaa
      121 actttctgga attcgtctcc cgaaggttca ggaaggcggg ctaaacgata attattcaat
      181 gagttaaacc atgcaaaata gtggttgaca cttgcaacgc cgctagttta tattttcagt
      241 ggcaggagtg attcgcacgc tcagccgtag cgggtcaact ctttgaaagg tcggcggggt
      301 ggggcgcggc gagcgcccgc gggctcccgg cccgacctcg attcgtaact cgaaaaaggc
      361 acactacgcg cgagcgtagg ccgcaaagcc gacgggagtc agccgctcgc ttatcgggct
      421 tctgactcgg ccgggttgcc gaagggagac gattttgagc cgcagcgggg caactctgaa
      481 gctctcgccc acggcggcgg ccgcgccatc cctccttcgg aagtcttcac ctaagtctca
      541 agctctgaac cctcccgcct cgctgcccag tcttgagcag cgaccacgcg cacgacgagc
      601 ccgctcggcc gcgcccgaag acacgatgcc atctgccccc acaacccacg cgccgcggcg
      661 gcgcacgacg cgttcgagag cccgccgcgc gcgcgcccgc ctcagagaac ttcaccgccg
      721 ccgcaggatt gagcaacccc gtccggaaca ggaatcctat gtttagaaaa aacctcggta
      781 agaaggggct ggtcggcttg gacatcggtt cgagctcggt caaggccgtc gagttgcagg
      841 gcaagcccgg ctcgctccag ctcgtcaacc tcggcttcga gagcctccag cccgacaccg
      901 tagttgacgg gcagataatg gagctgaacg acgtttcgca cgtcatctcg ggcctcttca
      961 gcagccgcca gttcaagaca gagcgcgtgg cggccggcgt ctccggcagc tccgtcatcg
     1021 tcaagaacat cgtcgtcccg cagatgacgc gcgacgagct cgaagagtcc atagactggc
     1081 acgccgaaga gcacatcccg ttcgagattt cggacgtgaa cctcgactac caggtcgtcg
     1141 gctccggcca cgactccttg caagtcctca tggccgcctg caagcgcgac tcgatcgcca
     1201 acctcaagca ggccatacag ctcgccggca agcagcccgc cgtcatagac gttgacgcct
     1261 tcgcccttca gaactgctac gagatcaact accagccgcc cgaggggctg gtggtcgcgc
     1321 tcctgaacgt cggcgcctcg acgatgaaca tcaacatcgt caagggcgtt cgaagcgtct
     1381 tcacgcgcga cgtgtcggtg ggcggcaacc agtacacggc cctcttgcag aaagagctgg
     1441 ggctcacata cgagcaggcc gaggccgtca agcgcggcgc cgcggcgccc tcgcacgtcg
     1501 aggcggccga gattgacggc atactcgaga cagtctcgga gatgctcggc ctcgagattt
     1561 ccaagacctt cgatttctac cgcgccacgg ccgacgaggg cgacgaagcc gtgcagaaga
     1621 ttctgctctc cggcggcggg tcgaagctaa aggggctacc cgagtacctc tcgaaccgtt
     1681 tcgagatgcc ggtcgagcgg ctcgacccgt tccgccatgt caaggtggat gcgcgccgct
     1741 tcgacccaga ctacatgcgc gaggtcgtgc cggagatggc cgttgccgtc gggctggccc
     1801 tgagaggagt ggatgcctaa atgattaagg tcaacctgct gaactcggtc accgacaagg
     1861 cccgcggccc cgtcgccgtc gagcagaagg tcacgagccc gtcggcgcgg gtgtggatgc
     1921 tcggcgcctc ggtcttcgcg ctgatggcgc ttgtgatgat cttcgactac gtgagcgccg
     1981 gcacggcgcg agacgcggcg caggcggagc tcgagcgcca gcagcagata gccgcgcaga
     2041 tggcctcgat caacaaggag caggccgagc tggagaagaa gatcaaggac atacagtacc
     2101 gcatagacgc catcaagaag ctgcgcgcgt cgcagcaggg ccctgtggcg ctgctctccg
     2161 agataaacgg ccgcataccc gcggagccca acttcaggct cgaatcaatc gagcagaagg
     2221 gcggcgagct gacgattgag ggccactcgc ccaacgagta cgccgtcacg cagttcggcc
     2281 gcgggctcga attctcgtcc ggcgtcttcg cgaacgtctc gatggagatg gagcgaaagc
     2341 ctgtggagtt caacccggcc gactacgacc cgtccgaagg gccgttcgac ctctcggtca
     2401 agcccgagac cgtgaaattc aagataaagt gcaggtacac gcccgcctcg cccgcgccgg
     2461 gccagcctgc gccgggcgcg cccgcgaacc aggtagccag caagtaagcc accgcgcgcc
     2521 gacttgagcg cgccggaagg ggatcgaacg atgagcagat tcggtaacat acaggagaag
     2581 ccctggtacg tgcaggtcgc gctcttcggc ggcgtcgcgc tcctcctata cctggggttc
     2641 tggtacttcg tcaccagcgg caagcgggcc gagacgcgcg agatcgagga gaaggtcgcg
     2701 cagctacagc gcgacaacgc gcgcgcgcag atagcctcgc agcgcctcac cgagttcaag
     2761 gcgaacttcg agcgcgttca ggccgactac gaagacctca aagccttgct gcccgagcag
     2821 cgcgagctga cgctcgtctt gcagaaccta caggacaggg ctcgcggccg cctgacgctc
     2881 aggcgcttca cgccgaagga ggacgtgcag caggacttct actccggcaa gcaggtcgag
     2941 gtcgcagtca ccggcacgta caacaacgtc gggcagttct tcgcgcagct cgccacctac
     3001 cagcgcatcg tctcgataac cgacttcaag gtgtcgaagc tgaaagaggc gaacgccccg
     3061 ctcgacaaga gggaaggcaa gaccgttgac gcgcagttcc tgctcacggc ctactacgtc
     3121 tcgcccgaca agctgaagcc gggcgccgcg gcccccgcgc agccggcaca gcagccagcg
     3181 gcacccgccc cggccggcgc ccaggcgccc gcgccgacgg ccgccaagta gtcgctctcg
     3241 aaggaacgaa gggatagaaa catgaaggac ggcagggaac aaacaccgaa agctttctac
     3301 cgcgcgctcg ccgcgttcgc gctcgcgctc ggcttcgccc aggcggcctc ggcgcaggtc
     3361 acgagcacct cctaccgcgg cacggcgcgc gacccgttcg tcaagtacag gccgcccgtc
     3421 ccgcgcaagg tcgagaagaa ggtgaacggc cccatacagc cgccgcccat ccgcgcgcgc
     3481 atagagaact acaaggcgca gaagctggcc gcgatgaact tgcagcagcc cgcgccgaag
     3541 ccgacgacgg cgcttctgct gagcgaagtg caggtcaccg ggatattccg cacgccgcgc
     3601 ggctacgccg cgatggtcga ggcgacgccg ataaagctct cctacgttgt ctatcccggc
     3661 gaggccttct acgacgggat gctcgtggcg atagaggaga cgcggctcgt cttccgcaag
     3721 cagacccgct ggacggacgg ccgcgtcgag gtgagcgttg acacgaagag ccttcgccag
     3781 cccaacgcct acgccgactc gcttacaacg cagcgcggca tggcctccgg cgtcgcggcc
     3841 gaggccggcg ccaactcgcc ggacgcgcta gtagccacgt tccgcgacgc acactccagc
     3901 cgcgacctcg acgccgtcac gaagctcttc aacctcgacg gggcggacga cgacaccaag
     3961 cgggtcgtca acggcctcgt catgtacctg tccgggatga agctggcgga cgtgcagttc
     4021 gtcacccctt cccggaacgt cagccacgac tacacgatcc gcggggtcaa gtacaagttc
     4081 gacacgccga gcgtcggcga cttcgtcatc actgtcgagg ccgagaacca ggcgaaaatc
     4141 ccgctggtct tacccgtggg cctcaaggac ggcaaatact tcctgagcac cggcaggccg
     4201 gaacagaagt gaccgccgcc cctccacccc tcgcccctcc tcgccaccgt ccgctcgcgc
     4261 ctgcctttag tcgccgccgg gccgcccggc ctgacggcaa cctttgaatg acaacattac
     4321 cggggccgca cgcgttgtgc ggcgcgcgct tgaagggcgg cccgccgcga agggggccgc
     4381 gcggacgagc ggcgcgtggc gggcgggtcc ggtggtgtta tgaaggacaa aaatatggct
     4441 tacatcagaa ccaagttaag ggccgcgacg agggttccgc tcgtgctctc gctcgtgtgc
     4501 ctgctctgca ccgcggcgct aggggccgcg cccggagggg cgggctaccc cgtggcgcgc
     4561 tccgtgcggg cagtcacgtc cggcggcgtc accctcatca ccgtctccgg cactgcgccg
     4621 atgccgcact ccgtgcgacg ccccgaagag ggcctgctcg tcgttgacct ccccggcgtt
     4681 gacgcctcgc agctcgccga aacttacggc gtcgtgtcgc cgctcgtcgc gggcgtgagc
     4741 gtccggcggg cgctgaaggg cagcgagccc gtcgcgagcc tgcacgtccg cctgctcgcg
     4801 cccgtgcgcg agcgagcgaa cctcgtcggc aacgacctga tgctggaact gacgcccgcc
     4861 gagaagggcg cggcggcctc ggcctccggc gcttcggtca gcgcggaggc gcaggggcaa
     4921 cccacgcccg cgccgcagaa cgggcagccg cagctctcgc agggccagca gtacggctcg
     4981 cccggcttcg tcggcgagcc gataaacctt aacgtcgtca acgccgacat acgcgacata
     5041 ctcaactaca tcaccgagca gtacggcgtg aacttcgtcg ttgacgcctc ggtcgagcgc
     5101 gtgcccgtca cgattaacgt gacggaggtg ccgtggaact tcgccctcaa ctcgatactc
     5161 aaggccaacc gcctcggcat cgaggtcaac ggcaat
//
LOCUS       DASPKR010000720         3341 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1663623, whole genome shotgun sequence.
ACCESSION   DASPKR010000720 DASPKR010000000
VERSION     DASPKR010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3341)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3341
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1663623"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1292)
                     /locus_tag="VD968_18860"
     CDS             complement(<1..1292)
                     /locus_tag="VD968_18860"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE16506.1"
                     /translation="MRNTLKLLLFFCALAALCAEARSAERWSSKLDGKVQFYQATEVG
                     VLIVGTEKSLYALDAETGDVLWRRKNARLGETEVAPVPGTDVLLLSPERDDRTRLEAV
                     DLITGDALWRADKVRGGVMQMAFDPGSGLLAVVFARDARGRAREGFKKKPVVHTLDVR
                     TGRELWKRELESEVEMMPAFSGSEDEEVAYTLDNYRPPVFLDGRLYLFYEGLTSLDAV
                     TGRERRREKFRVNEEGLALTEADPLADERALYVSGRGRVRAVSRDDGEEIWEAKDLGV
                     APEMILTGGVLFVRTGGQFTRLRDGETSERGPYGVSAIDAATGKVIWRYKGADKGITN
                     MALPDASTVLIADRDDLIFIDAATGKRRRKVSHGVERAAFLLLNEGGQAVVGGRNEVA
                     AFDSREGAALWRSRHNPPGRGVFRTVAAVAARAASLYFR"
     gene            1458..2030
                     /locus_tag="VD968_18865"
     CDS             1458..2030
                     /locus_tag="VD968_18865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16507.1"
                     /translation="MRKFLLSTFCAMALLAGDAQAQEQAVKDTAQDAAEKTKDAGKAV
                     GDKAEDVKDKTAKGAKKAGKTAKKAGSEAADKTEDAAGKAKEAGSEAADKAEDAGDAT
                     VKGTKKVGKHAKAAGAEAADKAEDVGGATAEGAKVAGSEAADKAEDAADMTKGAGAEV
                     ADKAGDAGSATAKGAKKSGNWFKRTLKKIF"
     gene            2163..2828
                     /locus_tag="VD968_18870"
     CDS             2163..2828
                     /locus_tag="VD968_18870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16508.1"
                     /translation="MRMKLTAASVVLALAALAAGCGGDGGAGNANNANGNANANRSTS
                     STTGDGVRTAPDGSEVRTETAGGVTTETRTFSDPNSRVERVVVTTRDGKRTARVYYRN
                     KTVRELPDGQIERALDETADTLATLGERGVDVTKEIGSEVGDKAEDVAGAAGDAAREV
                     GDKAEDVGDAAAKGAKTAGSEAADKAEDAGDAATSGAKKAGKATAKGAKKVGGAIKDA
                     VTP"
     gene            2993..3292
                     /locus_tag="VD968_18875"
     CDS             2993..3292
                     /locus_tag="VD968_18875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16509.1"
                     /translation="MAEATTSWTVICPCCEATIVVDAQTGAIISHQEKAKPLASFEEM
                     AKEMERQKQVREQVFSQELGSMKDRERLLEEKFREAMKRAEKDKDKPYKNPLDLD"
BASE COUNT          655 a         1054 c         1194 g          438 t
ORIGIN      
        1 cggaagtaga gcgaggcggc gcgggcggcg acggccgcga ccgtgcggaa gacgccgcgg
       61 cccggcgggt tgtggcgcga gcgccagagc gcggctccct cgcgcgagtc gaaggccgcg
      121 acctcgttcc tgccgccgac gacggcctgc cccccctcgt tcagaagcag gaaggctgcg
      181 cgctcgacgc cgtgcgagac cttgcggcgg cgcttccccg tcgccgcgtc aatgaagatg
      241 agatcgtcgc ggtcggcaat cagcacggtc gaggcgtcgg gcagcgccat gttcgtgatg
      301 cccttatcgg cgcccttgta gcgccagatg actttgccgg tcgcggcgtc aatggcgctg
      361 acgccgtaag ggccgcgctc ggacgtctcg ccgtcgcgga ggcgggtgaa ctgcccgccc
      421 gtcctgacga agagaacgcc gcccgtgagg atcatctcgg gcgctacgcc caagtcctta
      481 gcctcccaaa tctcctcgcc gtcgtcgcgc gagacggcgc gcacgcggcc ccggcccgag
      541 acgtaaagcg cgcgctcgtc ggcgagcggg tctgcctcgg tgagcgcgag cccctcctcg
      601 ttgacgcgga acttctcgcg ccggcgctcc ctgcccgtca cggcgtcgag cgaggtcagc
      661 ccctcgtaga aaaggtagag ccggccgtcg aggaagacgg gcgggcggta gttgtcgagc
      721 gtgtaggcga cctcttcgtc ctcggagcct gagaaggccg gcatcatctc gacctcgctc
      781 tcaagctcgc gcttccaaag ctcccggccc gtgcgcacgt cgagcgtatg gacgaccggc
      841 ttcttcttga agccttcgcg cgcgcggccc cgcgcgtcgc gcgcgaagac gaccgcgagc
      901 agccccgagc cggggtcgaa ggccatctgc atgaccccgc cgcgcacctt gtcggcgcgc
      961 cagagcgcgt cgcccgtgat gaggtcaacg gcttcgaggc gcgtcctatc gtcgcgctcg
     1021 gggcttaaga gcagaacgtc cgtgccgggg acgggggcca cttccgtctc gccgagccgc
     1081 gcgttcttgc gccgccagag cacgtcgccc gtctcggcgt cgagcgcgta gagcgacttc
     1141 tccgtgccta cgatgagcac gcccacttcg gtcgcctggt agaactgaac cttcccgtcc
     1201 agctttgacg accagcgctc ggcggagcgc gcctccgcgc agagcgccgc gagcgcgcag
     1261 aaaaagagca ggagcttcaa agtgtttcgc atgattcagg cggggagagt tttttcaaag
     1321 tcttacggca agtataaccc acgggctgcg taaaaactcg cgcagccgtg ccgttctggc
     1381 acctcagttg ccaacctcaa gtgaagagat gcggaaactg tttgattttg ctgcacgagg
     1441 cgaggggggg actgtctatg cgtaagtttt tgttgtcaac gttctgcgcg atggcgctgc
     1501 tagccggcga cgcgcaggcc caggagcagg ccgtaaaaga tacggcgcag gacgcggccg
     1561 agaagacgaa ggacgcgggt aaggctgtcg gcgacaaggc cgaggacgtt aaagacaaga
     1621 ccgcgaaggg ggctaaaaag gccggcaaga ccgccaaaaa ggccggcagc gaagccgccg
     1681 acaagaccga ggacgcggca ggcaaggcca aagaggccgg gtctgaggcc gccgacaagg
     1741 ccgaagacgc aggcgacgct accgtgaagg gtacgaagaa ggtcggcaag cacgcgaagg
     1801 ccgcgggcgc agaagcggcc gataaggccg aggacgtggg cggcgcgaca gccgagggcg
     1861 cgaaggtcgc gggcagcgaa gccgccgaca aggcagagga cgcggctgac atgactaagg
     1921 gcgcgggcgc cgaagtcgcc gacaaggccg gggacgctgg cagcgccacc gccaaaggcg
     1981 cgaagaagag cggcaactgg ttcaagagga cgctcaagaa aatcttctaa cctctgtgca
     2041 ctctcggtgc tctctgtggc tctgtggcga gtgaagcgtg acgagcaccc accacagaag
     2101 tcacagaggc cacggagcaa gcacaggggt gttgacatga tttcgacgga gggagttaag
     2161 aaatgagaat gaagctgacg gcagcgtcgg tcgtgctggc gctggccgcg ctcgcggccg
     2221 gttgcggcgg cgacggcggc gcgggcaacg ccaacaacgc gaacgggaac gctaacgcga
     2281 accgctccac ctcgtccacg actggcgacg gcgtgagaac tgcgcccgac ggctcggagg
     2341 ttcggacgga gacggcgggc ggcgtcacga ccgagacgcg aacctttagc gacccgaaca
     2401 gccgcgtcga gcgcgtcgta gttaccacgc gcgacggcaa gcgcacggcc cgcgtctatt
     2461 accgcaacaa gaccgtgcgc gagctgcccg acggccagat cgagcgcgcg ctggatgaga
     2521 cggccgacac gctcgccacg ctcggcgagc gcggcgttga cgtgacgaag gagatcggct
     2581 ccgaggtggg cgacaaggcc gaggacgttg ccggtgccgc gggtgatgcc gcgcgcgaag
     2641 tcggcgacaa ggccgaagac gtaggcgacg ccgccgcgaa gggcgcgaag acggccggaa
     2701 gcgaggccgc cgacaaggcc gaggacgcgg gcgacgctgc tacctccggc gcgaagaagg
     2761 ccgggaaggc caccgcgaaa ggcgccaaga aggtcggcgg cgcaatcaaa gacgccgtca
     2821 cgccctgacg gcggccgaca acctgaacga ccggggcagc ccctacggcg cggggctgcc
     2881 ttttctttcg gccgcacagg ctcgccgccc cgcgccgcgc cggtgatata atctgcggcc
     2941 tacggtgccg cccgcggtgc tgatgcttgg ttaactcgga gggaggagcg acgtggctga
     3001 agcgactacg agctggacgg tcatctgccc ctgctgcgag gctacaatcg tagtggacgc
     3061 gcagacgggg gcgatcatct cgcaccagga gaaggcgaaa ccgctcgcct cgttcgaaga
     3121 gatggcgaaa gagatggagc ggcagaagca ggtgcgcgag caggtctttt cccaggagct
     3181 tggctcgatg aaagatcgcg agcggctact agaagagaag ttccgcgagg cgatgaagcg
     3241 cgctgagaag gacaaggata agccctacaa gaacccgctc gaccttgact gaactggccg
     3301 cgcccggcgg cggaaagggg ccggcgacat gcagagacac g
//
LOCUS       DASPKR010000721         3692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1153494, whole genome shotgun sequence.
ACCESSION   DASPKR010000721 DASPKR010000000
VERSION     DASPKR010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3692)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3692
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1153494"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1516
                     /locus_tag="VD968_18880"
     CDS             <1..1516
                     /locus_tag="VD968_18880"
                     /EC_number="1.5.5.1"
                     /inference="COORDINATES: protein motif:HMM:NF017038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004174 -
                     electron-transferring-flavoprotein dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HYE16510.1"
                     /translation="ILSGAVMDPKALRELIPDFIEQGAPVEAPVNEDYFLYLTKTRAI
                     KSPVTPPPLKNHGYYIVSLNKLTAWLGEKCEEAGVNIFPEFPGAEVLYDERDRVVGVR
                     TGDKGVDREGRRRANFEPGVDILAKVTVLGEGPRGSLTKQLTQRLNLADGREPQVYSI
                     GVKELWELPDDRYPAGRVTHTLGFPSDANTYGGGWIYGMQNRILNIGYVTGLDYRDPL
                     LDPHAEFQRFKTHPHIAKLLDGGRMIRYGAKTIAAGGFYAIPQFHGDGFLLVGDSAGF
                     LNSQRLKGIHTAIKSGMLAAQAIFEALLSGDYSKQQLKRYRQLVRESWITDELKRVRN
                     FHSAFKHGRWVGLANAGLQFLTGGRSWGLFDRASLEPGHEAMKKLKDFGYHGDDLDQR
                     YGKLRFDGKLTFNKVTDVYHAAVSHHEDQPAHLHVLDTNICATRCAEEYGNPCQRFCP
                     AAVYEMVGNGDGKRRLQINFSNCVHCKTCDIMDPYQIINWVTPEGGGGPDYKGM"
     gene            1527..1961
                     /locus_tag="VD968_18885"
     CDS             1527..1961
                     /locus_tag="VD968_18885"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HYE16511.1"
                     /translation="MKLSRESQALAEAFFREHTGDPELRLPPISIHGGAAARLLMWMI
                     GMSAITFGRRVFVRPSHLARDSEGRAVMPGWLLIHEAAHVLQYEERGYLRFFRDYLRN
                     YWRGLRGAGGWGAACRMAAYMAIAEECEAREAEHAYRTKAAR"
     gene            complement(1984..2211)
                     /gene="rpoZ"
                     /locus_tag="VD968_18890"
     CDS             complement(1984..2211)
                     /gene="rpoZ"
                     /locus_tag="VD968_18890"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF013365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HYE16512.1"
                     /translation="MTATEDADNQDDSKARPHEIDSKYRLILVAAQRSKQLQKGARPR
                     VEMDAQRHKPTRIALEEVQRGKVNFDLIEKE"
     gene            complement(2354..3022)
                     /gene="gmk"
                     /locus_tag="VD968_18895"
     CDS             complement(2354..3022)
                     /gene="gmk"
                     /locus_tag="VD968_18895"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR03263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HYE16513.1"
                     /translation="MSEGGSITTELRLPPDADGSHRGILFVISSASGGGKGTLIRRVL
                     AAVPGLSLSVSWTTRAPRADELDGVNYHFVSPAEFEAMRERGGFLEWALVHGNLYGTA
                     RSVVAQELAEGRDIVLEIDVQGAASVRSSLGPSVVSVFILPPSFEVLRARLTARMTER
                     EEEVALRLRNARGEVEQCGNFDYVVLNDEVERASAQLASIIYAERARASRQRGLARRV
                     LATF"
     gene            complement(3015..>3692)
                     /locus_tag="VD968_18900"
     CDS             complement(3015..>3692)
                     /locus_tag="VD968_18900"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HYE16514.1"
                     /translation="RTGEVAYELNRPLIAGFIQAMRSMQQEFNLTGEPDINVLARLPG
                     AMQAAREGITEEMIRGVERALDEALGELEAMRMREGAALAAEMGARLDDIERHLPVVE
                     SLAGEQVDAYRARVYKRISELLARDGLEIVELDQGRLAQEVAYLADRSDITEEIARLR
                     SHVAQFRAALSEEGETGKRLDFLLQEFNREANTVLSKSTDTAIKEAALAIKAAVEKLR
                     EQVQNVE"
BASE COUNT          607 a         1272 c         1171 g          642 t
ORIGIN      
        1 catactctcc ggcgccgtca tggacccgaa ggcgctacgg gagctcatcc ccgacttcat
       61 agagcagggc gcgcccgtcg aggcacccgt gaatgaggac tacttcctct acctgacgaa
      121 gacgcgcgcc atcaagtcgc cagtcacgcc gccgccgctt aagaaccacg gctactacat
      181 cgtctctctc aacaagctga cggcgtggct cggcgagaag tgcgaggagg cgggcgtcaa
      241 catcttcccc gagttccccg gcgcagaggt gctctacgac gagcgagacc gcgtcgtcgg
      301 cgtgcgcacc ggcgacaaag gcgttgaccg cgaggggcgc cgccgcgcca acttcgagcc
      361 gggcgttgac atactcgcga aggtgacggt gctcggcgag gggccgcgcg ggtctctgac
      421 gaagcaactc actcagcgcc tgaacctcgc cgacgggcgc gagccgcagg tctatagcat
      481 cggcgtcaag gaactctggg agctgccgga cgaccgctac ccggccggtc gcgtcacgca
      541 caccctcggc ttcccgtcgg acgcgaacac ctacggcggc ggctggattt acgggatgca
      601 gaaccgcatc ctcaacatcg gctacgtgac ggggctcgac taccgcgacc cgctgctcga
      661 cccacacgcc gagttccagc gcttcaagac gcacccccac attgcgaagc ttctggatgg
      721 cggcaggatg atccgctacg gcgcgaagac catcgcggcc ggcggcttct acgccatacc
      781 gcagttccac ggcgacggct tcctgctcgt cggcgactcg gccggcttcc tcaattcgca
      841 gcgcctcaag ggcatacaca ccgccatcaa gagcggcatg ctcgcggcgc aggccatatt
      901 cgaagccctg ctctccgggg actactcgaa gcagcaactc aagcgctacc ggcagctcgt
      961 gcgcgagagc tggataacgg acgaactgaa gcgcgtcagg aacttccact cggccttcaa
     1021 gcacggccgc tgggtgggcc ttgcgaacgc cggtttacag tttttgaccg gcgggcgctc
     1081 gtgggggttg ttcgaccgcg cgagtttgga gccgggccac gaggccatga agaagctcaa
     1141 ggacttcggc taccacggcg acgacttaga ccagcgttac ggtaagctcc gcttcgatgg
     1201 caagctcacc ttcaacaagg ttacggacgt atatcacgcc gccgtctccc accacgagga
     1261 tcagcccgcg cacctccacg tcctcgacac gaacatctgc gccacgcgct gcgccgagga
     1321 gtacgggaac ccctgccagc gcttctgccc cgcggccgtc tatgaaatgg tcgggaacgg
     1381 ggacgggaag cgccgccttc agatcaactt ctccaactgc gtccactgca agacgtgcga
     1441 cataatggac ccgtaccaga taatcaactg ggtgacgccc gagggcggcg gcggccccga
     1501 ctacaagggc atgtgacggt tcggcgatga agctttcacg cgagtctcaa gctctggccg
     1561 aggcgttctt ccgcgagcac accggcgacc cggagttgag gctgccgccc atttcgatcc
     1621 acggcggggc ggcggcgcgg ctgctgatgt ggatgatagg gatgagcgcg ataacgttcg
     1681 ggcggcgcgt cttcgtcagg ccgtcgcacc tcgcgcgcga ctcggagggg cgcgccgtca
     1741 tgcccggctg gctcctcatt cacgaggccg cgcacgtcct tcagtacgag gagagaggat
     1801 acctgcgctt cttccgcgac tacctgcgga actactggcg tggattgcgg ggtgcgggcg
     1861 ggtggggcgc tgcctgccgc atggcggcat acatggctat agctgaggag tgcgaggccc
     1921 gcgaggccga gcacgcctac cggacaaagg ccgcgcgctg accgtgcggg cgccggcctc
     1981 tcgctactct ttctctatca gatcgaaatt aaccttgccg cgctgcacct cttcgagggc
     2041 gatgcgcgtc ggtttgtggc gctgtgcgtc catctccacg cgcgggcgcg cccccttctg
     2101 gagctgcttg ctgcgctggg ccgccacgag tatcagacgg tacttcgagt ctatctcgtg
     2161 cggccgggcc ttcgagtcgt cctggttgtc ggcatcttcc gttgctgtca tcgcgtccgc
     2221 ggcctttggc atgtctctcc cgtccggctc atcagattca ggccggcgcc ctcctatgag
     2281 ttccagcgtg cttgatttat cactctttta taaactttcc ggccgattta ttcaacgccg
     2341 gggcggcgcc tcactagaag gtcgcgagca ctcggcgcgc gagcccgcgc tgtctcgacg
     2401 cgcgcgcccg ctccgcgtag atgattgacg cgagctgcgc cgatgcgcgc tcgacctcgt
     2461 cgtttaagac gacgtaatca aagttcccgc actgctcgac ctctccgcgc gcgttccgaa
     2521 gccgcagggc cacctcctcc tcccgctccg tcatcctcgc cgtcagtcgc gcgcgcagga
     2581 cttcgaacga aggcggcagg atgaagacgc tcacgaccga ggggccgagc gaggagcgca
     2641 cagaggctgc gccctgcacg tctatctcga gcacgatgtc gcgtccctcg gccagctcct
     2701 gtgcgacgac gctgcgcgcc gtgccgtaca ggttgccgtg gactagggcc cattcgagga
     2761 agccgccgcg ctcgcgcatc gcctcgaact ccgcgggcga gacgaagtgg tagttgactc
     2821 cgtcgagttc gtccgcccgc ggcgcgcgcg tcgtccacga gacagagagg ctcaggcccg
     2881 gcaccgccgc gagcacgcgg cgtatgagcg tccccttgcc gccgcccgag gcggagctta
     2941 tgacgaagag gatgccgcgg tgcgagccgt cggcgtccgg cgggagacgc aactcggtag
     3001 ttatcgagcc cccttcactc aacgttctgc acctgctcgc gaagcttctc caccgcggcc
     3061 tttatcgcga gcgcggcctc cttaatggcc gtgtccgttg acttcgaaag cacagtgttc
     3121 gcctcgcggt tgaactcctg aagcaggaag tcgagccgct tgcccgtctc gccctcctcc
     3181 gagagcgccg cgcggaactg cgcgacgtgg ctgcgtaggc gcgctatctc ctcggttatg
     3241 tcgctgcggt ctgcgaggta cgcgacctcc tgcgcgagcc ggccctggtc tagctcgacg
     3301 atctcgaggc cgtcgcgggc cagcagttcg cttatgcgct tatagacgcg cgcgcggtag
     3361 gcgtccacct gctcgccggc tagcgactcg acgacgggca ggtggcgctc aatatcgtcg
     3421 agccgcgcgc ccatctcggc ggcgagcgcc gcgccctcgc gcatgcgcat cgcttccaac
     3481 tcgccgagcg cctcgtctag agcgcgctcc acgccgcgga tcatctcctc ggttatgccc
     3541 tcgcgcgccg cctgcatcgc gccgggcagg cgcgccagca cgtttatgtc gggctcgccc
     3601 gtcaggttga actcctgctg catcgagcgc atggcctgta tgaagccggc gatgagcggg
     3661 cggttcaact cgtaggcgac ctcgcccgtg cg
//
LOCUS       DASPKR010000722         4732 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_757259, whole genome shotgun sequence.
ACCESSION   DASPKR010000722 DASPKR010000000
VERSION     DASPKR010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4732)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4732
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757259"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..453)
                     /locus_tag="VD968_18905"
     CDS             complement(<1..453)
                     /locus_tag="VD968_18905"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE16515.1"
                     /translation="MASHGSEGGNGGAAHSGRAAAPRRVLVVDDEESVRVTTAAILEQ
                     DGYEVGTASSGREALAKADAGHYDLVLTDLRMDDMDGIALLHELRSRHPEVAAVVLTG
                     YASIESSIDALRQGAYDYLVKPCVVEDLKRTVRRAVEDRDQRARITELS"
     gene            complement(434..2611)
                     /locus_tag="VD968_18910"
     CDS             complement(434..2611)
                     /locus_tag="VD968_18910"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE16516.1"
                     /translation="MDRLTETVPRQAAPGDGHAAGRLPADAYELLFELTTQLLTAHTL
                     DEQLSLVLDTLVSGLGHEPAAVALVDRARGVLRVRAAAGADGGAGAEGLELPLDSNAP
                     QVKAVHDGRPAWVERGAQDAPTRDFLERLGARSDVLALPLFGGPGTGAPSAVDTGRPF
                     DESRYWLPRSLCTGALYVGARRDEMGEGRHTLLAHFADRVGVILSNTIQIERLHAAVA
                     KLQRERQWVESVMKSVADPIVLTNMDNEILLQNRRAEELFSDRREASEGKRRALEMND
                     LLFSAYLSSAAVASAEIVGRDLTLVDPLEGSDIHFEVISTPALNARGERIGMVSIFRD
                     VTDLRRANEDLVRNFGKLQEAEHEARRERDRLDLILEHVGQPIAVCDSSGKFILLNQL
                     AERLFQEHDGMAVGARRAVSANSVKLTSFISALASGAETGRQAEIELIDPEAGRRLPM
                     EITSAEVTDAKGQVTAVVSVLHDLSEIRELERRRVEQQLFESEKLAAVGRLAASIAHE
                     VNNPLEAIKNSLYLLSSGKSLEQNSRFLDVARKETERVSHNIRQMLGFARRSGEAEWT
                     DVNQLLEETLILIEKKMRQARVEVVRELDATLPKVRARADQLRQVFLNLLLNAQQSMD
                     GAGRISIRTSRYEHALQPTVSVEISDTGRGIAEAELSRIFEPFFSTRAKGTGLGLWVT
                     QDIVRHHGGRIEVTSAEGRGTTFNIVLPVDSPTLSEADGVTRK"
     gene            complement(2694..2981)
                     /gene="gvpA"
                     /locus_tag="VD968_18915"
     CDS             complement(2694..2981)
                     /gene="gvpA"
                     /locus_tag="VD968_18915"
                     /inference="COORDINATES: protein motif:HMM:NF006874.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0012506 - vesicle membrane [Evidence
                     IEA];
                     GO_component: GO:0033172 - gas vesicle shell [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle structural protein GvpA"
                     /protein_id="HYE16517.1"
                     /translation="MAVERAPGGTSLIDVLDRVLDKGIVIDAWVRISLVGIDLITVEA
                     RVVVASIDTYLKYAEAVGLTPAVSRPAITPGAAEPLGDETRRRVSVEVDRG"
     gene            complement(3036..3443)
                     /locus_tag="VD968_18920"
     CDS             complement(3036..3443)
                     /locus_tag="VD968_18920"
                     /inference="COORDINATES: protein motif:HMM:NF012944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein"
                     /protein_id="HYE16518.1"
                     /translation="MSSERTSLITARPPGLVDVLDRILDKGLVIAGDIKVSLANVELL
                     TLQIRLLVCSIDKAEQIGLNWWRYDTNLTTRAAAAEAENAELRERVASLEREVRQLSA
                     PPAGAAAARSGSKAGSPRKSAPPRKAAGKRPPR"
     gene            complement(3570..3896)
                     /locus_tag="VD968_18925"
     CDS             complement(3570..3896)
                     /locus_tag="VD968_18925"
                     /inference="COORDINATES: protein motif:HMM:NF016977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein K"
                     /protein_id="HYE16519.1"
                     /translation="MIETEHAAEFAAELRRVADALPERINVDAQSVEQGLAKLVLTLI
                     ELIRRLLEKQAVRRMEGGGLTPEQIEELGLALMKLEEKMGELKRQFGLEDDDLNLDLG
                     PVGRLI"
     gene            complement(4006..>4732)
                     /locus_tag="VD968_18930"
     CDS             complement(4006..>4732)
                     /locus_tag="VD968_18930"
                     /inference="COORDINATES: protein motif:HMM:NF018129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GvpL/GvpF family gas vesicle protein"
                     /protein_id="HYE16520.1"
                     /translation="GRRGRRALSLYAYCLCEESAAEASAGGRGVGGAEVSALRLGSLA
                     ALVSEFEGERVAVTRENVLAHSRVNARALAVTTPLPFRFGTLAEAERLAAYVAANEAG
                     LREALARVSGHVEMGAKVLRAAAEAETRAGLAEEPGAAAGSGTAYLLAKRRAIEGGEA
                     LMREAEGAAAWLAGVVSDLARESSVSVNPAGQIVVRAAHLVERGRAAEYRARLREAGE
                     RRPELRLLTSGPWPPYSFGPPRS"
BASE COUNT          683 a         1659 c         1620 g          770 t
ORIGIN      
        1 ggaaagctcc gttatgcggg cgcgctggtc gcggtcttct accgcgcgcc gcaccgtccg
       61 cttgaggtct tcgacgacgc agggcttcac gaggtagtcg tatgcgccct ggcgcagcgc
      121 gtctatggat gactcgatgg aggcgtagcc cgttaggacg accgccgcga cttccgggtg
      181 gcgcgagcgc agctcgtgca gcagcgcgat gccgtccatg tcgtccatgc gcaggtcagt
      241 gagcacgagg tcgtagtgac cggcgtcggc cttggcgagc gcctcgcgcc cgctcgaggc
      301 cgtgccgacc tcgtagccgt cctgctcgag gatggcggcg gtcgtcacgc gcacgctctc
      361 ctcgtcgtca acgacgagca cgcgtcgcgg cgcggcggcc cgccccgagt gggccgcgcc
      421 cccgttccct ccttcacttc cgtgtgacgc catcggcctc cgagagcgtg ggggagtcaa
      481 cggggaggac gatgttgaag gtggtgccgc gcccctcggc gctggtgact tcgatgcgcc
      541 cgccgtggtg gcgcacgatg tcctgcgtga cccaaaggcc gagccccgtc cccttcgcgc
      601 gcgttgagaa gaagggctcg aatatgcgag aaagctcggc ctcggctatc ccgcggcccg
      661 tgtcggatat ctcgaccgag actgtgggct gcagggcgtg ctcgtagcgc gaggtgcgta
      721 tgctgatgcg gccggccccg tccattgact gctgcgcgtt caggaggagg ttgaggaaga
      781 cctggcggag ctggtcggcg cgcgcgcgaa ccttcgggag cgtggcgtcc agctcgcgca
      841 cgacctcgac gcgcgcctgc ctcatcttct tctcgatgag gatgagcgtc tcttcgagta
      901 attggtttac gtccgtccac tcggcctcgc ccgagcggcg cgcgaacccg agcatctgcc
      961 ggatgttgtg cgagacgcgc tcggtctcct tgcgcgccac gtcgaggaag cgcgagttct
     1021 gctcaaggct cttgcccgag gagagcaggt agagcgagtt cttgatggct tcgagagggt
     1081 tgttgacctc gtgcgcgatg gaggcggcga ggcgccccac ggccgcgagc ttctccgact
     1141 cgaagagctg ctgctcgacg cgccgccttt ccagctcgcg tatctcggag aggtcgtgga
     1201 gcacggagac gacggccgtc acctgcccct tcgcgtccgt cacctcggcc gaggttatct
     1261 ccatcggcag gcgcctgccg gcctcggggt caatcagctc gatctcggcc tgccggcccg
     1321 tctccgcgcc cgaggcgagc gcggagatga aggaggtgag cttgacggag ttggcgctca
     1381 cggcgcggcg cgcgcccacg gccatgccgt cgtgctcctg gaagaggcgc tcggcgagct
     1441 ggttgaggag tatgaacttc cccgaagagt cgcagacggc gatgggctgg ccgacgtgct
     1501 ctagtatcag gtcgaggcgg tcgcgctcgc gccgggcctc gtgctccgcc tcctgaagct
     1561 tcccgaagtt gcgcaccaga tcttcattcg cgcggcgcag gtcggtcacg tcgcggaaga
     1621 tggataccat gccgatgcgc tcgccgcggg cgtttagggc cggggtcgag atgacctcga
     1681 agtggatgtc cgagccttcg agcgggtcaa ctagggtgag gtcgcgcccg actatctcgg
     1741 ccgaggcgac ggccgcgctc gaaaggtagg cggagaagag gaggtcgttc atctccaggg
     1801 cgcggcgctt gccttcgctc gcctcgcgcc ggtcgctgaa aagctcttcg gccctccggt
     1861 tctgtagcag aatctcgtta tccatgttgg tgaggacgat ggggtctgcc accgacttca
     1921 tcacggactc gacccactgc cgctcgcgct ggagcttggc gacggcggcg tgcagtcgct
     1981 cgatctgtat ggtgttcgag agtatgacgc cgacgcggtc ggcgaagtgc gcgagcagag
     2041 tgtggcgccc ttcgcccatc tcgtcgcggc gcgcgccgac gtagagggcg cccgtgcaga
     2101 gcgagcgcgg cagccagtag cgggattcgt cgaaggggcg gcccgtgtca accgccgagg
     2161 gcgcgcccgt gccggggccg ccgaagagag ggagcgcgag cacgtccgag cgcgcgccga
     2221 ggcgttcgag gaagtcgcgc gtcggggcgt cctgcgcgcc gcgctcgacc cacgcgggcc
     2281 gcccgtcgtg cacggccttg acctgcgggg cgttcgagtc gaggggaagc tccaagcctt
     2341 ctgcccccgc cccgccgtcc gcgcctgccg cggccctcac gcgcagcacg ccgcgcgccc
     2401 tgtccacgag cgcgacggcg gccggctcgt ggcccaggcc cgagacgagc gtgtcgagca
     2461 cgagcgagag ctgctcatca agcgtgtgcg ccgtcagcag ttgcgtcgtc agctcgaaga
     2521 gcagctcgta ggcgtcggcc ggcagccggc ccgccgcgtg gccgtcgccg ggggccgcct
     2581 gccgcggcac ggtttccgtg agacgatcca taaagcagaa ggcggaaagt agtaggcgga
     2641 aagcagcagg cagtcagagc cgcctgactg cctgctgctt tccgccctct cccttaaccc
     2701 ctgtccacct ctacactgac gcggcggcgc gtctcgtcgc cgagcggctc ggccgcgccc
     2761 ggcgtgatgg ccgggcgcga gacggcgggc gtcaggccga ctgcctcggc gtacttgagg
     2821 taggtgtcaa tggaggcgac gacgacgcgc gcctcgacgg tgataaggtc aatgccgacg
     2881 agcgatatgc gcacccaagc gtcaatgacg atgcccttgt ccagcacgcg gtcgagcacg
     2941 tcaatcaggc tggtcccgcc gggcgctctc tcaacagcca tactctaaat atcctctctg
     3001 gggaaatgtc cgggggccgc gcgcggcccg tcctcctacc tcggggggcg cttgccggcg
     3061 gcctttcgcg ggggcgcgct cttccgaggc gagcccgcct tcgagcccga gcgcgccgcc
     3121 gcggcgcccg cgggaggcgc gctgagctgc ctgacctcgc gctcgagcga cgccacgcgc
     3181 tcgcgcagct cggcgttctc ggcctcggcg gccgccgcgc gcgtcgtcag gttcgtgtcg
     3241 tagcgccacc agttcaggcc gatctgctcg gccttgtcaa tcgagcagac gagcagccgt
     3301 atctgaagcg tcagaagctc cacattcgcc agcgacactt tgatgtcgcc cgcgatgacc
     3361 agccccttgt ccaaaatccg gtcgagcacg tcaaccaggc ccggcgggcg cgcggtgatt
     3421 aagctagttc gctcgcttga catcgttaag caatcggcgg ccagcggtca gcagtcggca
     3481 aaaaaaatct ttctcgggcg gccgtgatga aacgggcaac tatcgcaggc gaaaccggct
     3541 gaccgccgat agccggcctc cgaccgctcc taaatcagcc gccccacggg gccgaggtcg
     3601 aggttcaagt cgtcgtcttc gagcccgaac tgtcgcttga gctcgcccat cttctcttcg
     3661 agcttcatga gcgcgagccc cagctcctct atttgctccg gcgtgagccc gccgccctcc
     3721 atgcgccgga cggcctgctt ctcgagcagg cggcgtatga gctcgatgag cgtcagcacg
     3781 agtttcgcca agccctgctc gaccgactgc gcgtcaacgt tgatgcgctc gggcagcgcg
     3841 tcggcgacgc ggcgcagctc ggcggcgaac tcggccgcgt gctccgtctc aatcaccggc
     3901 tcggccggcg aactcttatc cgggggggaa agctccgcca caagattacc ctctaaacgc
     3961 ccgaagtgtc cattaccgaa cttacggccc gcggcgttta cgctttcagc tgcgcggcgg
     4021 gccgaagctg taaggcggcc aggggccgct cgtgagcaag cgcagctccg gccgcctctc
     4081 gccggcctcg cgcagcctcg cgcggtactc cgctgcgcgc ccgcgctcca cgaggtgcgc
     4141 ggccctgacg actatctgcc cggcagggtt gacgctcacc gacgactcgc gcgcgaggtc
     4201 tgagacgact ccggcgagcc aggcggcggc cccctcggcc tcgcgcatga gcgcctcgcc
     4261 gccttcaatc gcccgccgct tggcgagcag gtaggccgtg ccgctccccg cggccgcccc
     4321 gggctcttcc gccaggcccg cgcgcgtctc tgcctccgcc gcagcgcgca gaaccttcgc
     4381 gcccatctcg acgtggccgc tcacgcgcgc gagcgcctca cgaagccccg cctcgttcgc
     4441 cgcgacgtag gccgcgagcc tctcggcctc ggcgagtgtg ccgaagcgga agggcagggg
     4501 agtcgtgacg gcgagggcgc gagcgttaac gcggctgtgc gccagcacgt tctcgcgcgt
     4561 tacggcgacc ctctcgccct caaactcgct tacgagcgcc gccaagctcc cgagccttaa
     4621 ggcgctgact tctgcgccgc cgacgccgcg ccctccggcc gacgcctccg cggccgactc
     4681 ctcgcacagg cagtaggcgt acaagctcaa cgcccgcctc ccccgccggc ct
//
LOCUS       DASPKR010000723         2365 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_119374, whole genome shotgun sequence.
ACCESSION   DASPKR010000723 DASPKR010000000
VERSION     DASPKR010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119374"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VD968_18935"
     CDS             complement(<1..195)
                     /locus_tag="VD968_18935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16521.1"
                     /translation="MTLRTAIALATAAALLAGWLAIHSASPRTAWGLLAAAAVGAAAA
                     RFYPSALAGRREGGRVGAAAP"
     gene            complement(292..990)
                     /locus_tag="VD968_18940"
     CDS             complement(292..990)
                     /locus_tag="VD968_18940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011554764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYE16522.1"
                     /translation="MNRRVLIIEDEPDIAEGLRYNLEREGFKAVVAETGEEGLAAALD
                     EGGPPALILLDLMLPGMSGTELCRRLRREAATRRTPVIILTARGSESERVAGLDLGAD
                     DYVTKPFSVRELMARVRAVLRRSEEAAAAYYKDDRLQIDFDEMRVLCDGAAVRLTRKE
                     FGLLAALSRSPGRVATRNHLLDEVWGQQYYGDTRTLDVHIRRLRQKLGDCGGCIETVI
                     GVGYRFLGCAGGEE"
     gene            complement(1021..1680)
                     /gene="phoU"
                     /locus_tag="VD968_18945"
     CDS             complement(1021..1680)
                     /gene="phoU"
                     /locus_tag="VD968_18945"
                     /inference="COORDINATES: protein motif:HMM:TIGR02135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HYE16523.1"
                     /translation="MDHHRRLDDELGVLRDRLLVLGGEAEAALGRAVYALTGRDSEAA
                     RGVLAGDDRIDHLEVEIDRLCIDVLALRQPAARDLRFVISVAKITPILERVADHACNI
                     ARAALDLNDQPEFKYYPNLTQMAEVASSMLRSALDAFTRADAAGARRVIEQDDEIDRM
                     YERAFQDLIDLMAADPPTARRAARLLFVAKHLERVADYVTDICELTVYMAEAAVIKHS
                     H"
     gene            complement(1734..>2365)
                     /locus_tag="VD968_18950"
     CDS             complement(1734..>2365)
                     /locus_tag="VD968_18950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HYE16524.1"
                     /translation="ALDKVGLPDVLGTIPGARARGEVLIDGQDVYAPGVDVVELRRKV
                     GMVFQKSNPFPKSIFDNVAYGLRINKMTSGRSELHDRVEQALRDAALWSEVKDRLKAS
                     ALGLSGGQQQRLCIARALAVRPEVVLMDEPASALDPIATQKIEELIVELKRRYTIVIV
                     THNMQQAARVSDRTAFFWLGKLVEVNDTEKVFTNPDEKLTEDYITGRFG"
BASE COUNT          354 a          818 c          799 g          394 t
ORIGIN      
        1 cggcgcggcc gcgcccacgc ggcccccttc gcggcggcct gctagcgccg acgggtagaa
       61 gcgcgcggcc gcggcgccca ctgcggcggc cgccagtaag ccccacgccg ttcgggggct
      121 cgcactgtgg atggcgagcc acccggccaa gagcgcggcg gcggtcgcga gtgctatggc
      181 ggttctgagg gtcattgtgg acggagtagc caggccgccg cttacgtctt tggcctacgc
      241 cggcggccaa aaaccggccc gacgttggcg gggctctcac gacgcccggc gttactcttc
      301 cccgcccgcg cagccgagga agcggtagcc gacgcctatt acggtctcga tgcagccgcc
      361 gcagtcgccc aacttctggc ggaggcggcg gatgtgcacg tcgagcgtgc gcgtgtcgcc
      421 gtaatactgc tgtccccaca cctcgtcgag gagatggttg cgggtcgcga ccctcccggg
      481 gctgcgcgat agtgcggcca gcagcccgaa ctctttgcgc gtgagcctga ccgcggcccc
      541 gtcgcacagg acgcgcatct catcaaagtc tatttgcaac ctgtcgtctt tatagtaggc
      601 cgcggccgcc tcctccgagc gacgcagcac ggcgcgcacg cgcgccatca gctcgcgcac
      661 cgagaagggc ttggtgacgt aatcgtctgc gccgaggtcg agccccgcca cgcgctccga
      721 ctccgagcca cgcgccgtca ggatgatgac aggcgtccgc cgggtggccg cctcgcgccg
      781 cagccgccgg cacagttccg tcccggacat gccgggcagc ataaggtcga gcaggatgag
      841 cgccggaggg ccgccctcgt cgagggccgc ggccagcccc tcctcccccg tctcggccac
      901 cacggccttg aagccttcac gctccaggtt gtagcgaagg ccctcggcga tgtccggctc
      961 gtcctcgatg atgagcactc gcctgttcat acgaaagcac tgttgccggg cggcgcctct
     1021 ctagtggctg tgtttgatga cggctgcctc ggccatgtaa acggtcagct cgcagatgtc
     1081 agtgacgtag tctgcgacgc gctccaggtg cttggcgacg aagagcagac gggcggcacg
     1141 ccgcgccgtc ggcgggtcgg ccgccatcaa gtctatcagg tcttggaaag cgcgctcgta
     1201 catacggtcg atctcgtcgt cctgctcgat gacccggcgc gcccccgcgg cgtcggcccg
     1261 tgtgaacgcg tcgagggcgg agcgcagcat cgaggatgcg acctcggcca tctgtgtgag
     1321 gttcggatag tacttgaatt ccggctggtc gttgaggtcg agagcggcgc gcgcaatatt
     1381 gcaggcgtgg tctgccaccc tctcaaggat gggcgttatc ttggcgaccg agatgacgaa
     1441 gcgcaggtcg cgggcggccg gctggcggag cgccagcacg tcaatgcaga gtcggtcgat
     1501 ctcgacttcg aggtggtcta tgcggtcgtc accggcgagc accccccgcg cggcctccga
     1561 gtcgcgcccg gtgagtgcat agacggcgcg cccgagcgcg gcctcggcct cgccgccgag
     1621 cacgagcagc cggtcgcgca gcacgcccag ttcgtcgtcg agtcttctgt ggtgatccat
     1681 cttcgtcgcc tagcctcgta aatcatcgcg ccgcggcggg gcgcgcgccc ggcttagccg
     1741 aaacggcccg taatatagtc ctcggtcagc ttttcgtccg ggttagtgaa caccttctcg
     1801 gtgtcgttga cctcgacgag cttgcccagc cagaagaagg ccgtgcggtc cgagacgcgc
     1861 gccgcctgct gcatgttgtg cgtgacgatg acgatggtgt accggcgctt caactcgacg
     1921 ataagctcct cgatcttctg cgtcgcgatg gggtcgaggg cggaggccgg ctcgtccatc
     1981 agcacgacct cgggcctgac ggccagcgcg cgcgcgatgc agagccgctg ctgctgcccg
     2041 cccgaaagac cgagcgccga agccttcagc ctgtccttca cctccgacca gagcgcggcg
     2101 tccctgagcg cctgctcgac gcggtcgtgg agctccgacc tgcccgaagt catcttgttg
     2161 atgcgcagcc cgtaggcgac gttgtcgaag atggacttcg ggaaggggtt cgacttctgg
     2221 aagaccatcc cgaccttgcg ccgcagctcg accacgtcca cgcccggcgc gtaaacgtcc
     2281 tgcccgtcaa tcaggacctc gccgcgggcg cgggcgccgg ggatggtgcc caggacatcg
     2341 ggcaggccca ccttgtccag cgccg
//
LOCUS       DASPKR010000724        12277 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1663869, whole genome shotgun sequence.
ACCESSION   DASPKR010000724 DASPKR010000000
VERSION     DASPKR010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 12277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12277)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12277
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1663869"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..880)
                     /locus_tag="VD968_18955"
     CDS             complement(<1..880)
                     /locus_tag="VD968_18955"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HYE16525.1"
                     /translation="MRDTKTKPARAALTLFFLLASSVVCAAQGAPVVEKVEPPNWWAN
                     HSVNPVRLLIRGRNLSGARVEAESFAPATAAARGDGVGLKTGLLRVNERGTYLFLDVH
                     IEPGARPGRRSIRLRNASGAADFDFEVSEPVQRRGRFQGFTPDDVIYFIMPDRFADGD
                     RNNNNPAKSPGLYDRTKGRYYHGGDFQGLIERLPYLKDLGVTALWINPVYDNTDRLDE
                     REMYPEVEGGPKRPTTPYHGYGAIDFYGIEEHYGDMRKLRELVDKAHSMGLKVIQDQI
                     ANHTSPYHPWATDRPTP"
     gene            complement(899..2488)
                     /gene="malQ"
                     /locus_tag="VD968_18960"
     CDS             complement(899..2488)
                     /gene="malQ"
                     /locus_tag="VD968_18960"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: protein motif:HMM:NF011080.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004134 - 4-alpha-glucanotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0005980 - glycogen catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HYE16526.1"
                     /translation="MSFPRTSGILLHPTSLPGGYGVGDLGGEAYKFVDFLAAAGQHLW
                     QVLPLGPTGYGNSPYQCFSAFAGNTLLVSPDRLVEDGLLSREDLSGAPAFSEGRVEYR
                     EAIAFKSGLLRRAFERFKGEAGARLRGEFDEFKQRESSWLPDYALYRALKSERGEVAW
                     AEWEPELVRRDPAALEEARRRLAGEIEAVEFGQFLFFRQWSAVLDYAHEKGVSVIGDI
                     PIFVAHDSADVWAKPHLFKLGGDGRPSVVAGVPPDYFSKTGQLWGNPIYDWDAMRAEG
                     FGWWVERARSMLRLVDVIRIDHFRGFAAYWEIPGGDETAERGRWVFAPGEELFRAIKR
                     ELGVLPIIAEDLGFITPDVIELRDGFGFPGMRIFQFGFSTDTTNKDLPHNYVRNTVAY
                     TGTHDNDTAAGWFHSKAEGSSSVRSAEQIEKEKRFALDYLGSDGSEVHWDFIRAVLSS
                     SADTALVPLQDVLGLGSEARMNTPATTSGNWAWRYAAGALTDEITSRLRRMSELYGRH
                     PQLTDRPEHTADSYEFKQTWG"
     gene            complement(2537..4318)
                     /locus_tag="VD968_18965"
     CDS             complement(2537..4318)
                     /locus_tag="VD968_18965"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HYE16527.1"
                     /translation="MGRPHNQPRPAAHQREQPPRRARRGDEGGDGSLGRERQRRRHVP
                     LRQRPHKPRGAARRLPTHRRDGRGPGHRPVPHKRAARPGAQLPGRYDRRRYLPNHADR
                     FANGDRSNDAPPGSPAEANDRSNPRGWHGGDLRGIIERLPYLKDLGVTAVWTTPWHDN
                     WNGVNRCDKAWCPNTYYHGYHAVDYYAVEDRFGTIGTLRELVEKAHALGMKVIQDQVA
                     NHVGSQHPWVKDSPLDNWFHGTLERHFLNSFRGDFLHSPHAPEHARRTALDGWFSDDL
                     PDMNQEESEVARYEIQNSLWWVGMTGIDGIRQDTVQYLPRFFIRDLNAALDRQYPRMW
                     MVGEAWNVEPLHTAFYIGGREGWDGIDTRMDAVFDFPLWDVSLKVFTGKLPASALRDA
                     LRADAIYPDASRLVTMANNHDTRRFMSLEGATLEGAMMHFAFTVSVRGTPQIYYGEEI
                     AMRGGDDPDNRRDFPGGFPGDARDAFTKGGRTAEEQRMFEWARDWLRLRREHSALRRG
                     SLTDLFFDADAYAFARRDGSETVVVAFNRAAAPKEISFPVAYLDAADGARLVPLLVAK
                     DGAAAGGGAMKVTLPARSAAAYRLQDR"
     gene            complement(4643..6214)
                     /locus_tag="VD968_18970"
     CDS             complement(4643..6214)
                     /locus_tag="VD968_18970"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE16528.1"
                     /translation="MLTLRLELTALALCLLCAAAGPASAAQRKSRHASQPSAGARQGG
                     ARLQEAAALLRAGRLEEAEAVARRAVDASPRDAEPLALLGVILGQRGRAEEAAAALEQ
                     ALRLAPGHEQATFNLGAIYASRKDYRRAIPLLEKAARLRNGQAPAGADLALLVTLANA
                     YAHAGRPEDSKRLFAQVEQRAGEDPRALFTLGLALADAGAYDRAARYFALTDALRPDN
                     YEVVFNLGLALFQLGKLEESQDALRRAATLRPEEPEVFYRLGLVASARGESANAIGLW
                     QRAVKLRPAYAEANFMIAEELVKNRRYETALQFYESAVGQQPAEPLYPIRLGIAHFGL
                     RNYARSHEVFRAALARFPESPVLHYLAGYAARAEGLYDDALRYFRRSLELAPDNPAAL
                     ANVGFILGERGEHAESERLLRRAIGLDRDNYPAHYDLGRLLVRLKRYDEALPVLERGA
                     LLSKTDPGVHYQLFIALSRLRKKDEAERALATFRRLEEARKAGGAPPAEPGGPVPADV
                     LPPPEATAPGAARRP"
     gene            complement(6245..7348)
                     /locus_tag="VD968_18975"
     CDS             complement(6245..7348)
                     /locus_tag="VD968_18975"
                     /inference="COORDINATES: protein motif:HMM:NF015649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE16529.1"
                     /translation="MGSHAHRKDDGPRRALSLSLLAPALVAASALCAQAQPAGQVPAA
                     RVAEAIEHARRAPLDDEAFSRALTLGDALLVEGRYAEAADLFTALAGKKTRGEFFALY
                     GAALAAFNAGRAAEAEPLARRAAEVAPASPPTQGAVPPAGVRAAGAADAHVLLAVVLA
                     VRGDEAGSLAAARRAVALSPSSFDAQFTLGRALYGGGDPAGAARAFRAAAALRPDDPR
                     PRFFLATALEGAGDLDAALAAYRELVARQPGATEGHLGLGSLLVRRGQVEEGIESLKR
                     AVALGPDSYEARVTLGRALVAKGQAAEAVEHLRRAAEIAPNNPEPHYQLSIAYRRLGR
                     RAEAAEESAIVKRIHEARRLAGQGAAPARTPEE"
     gene            complement(7551..11114)
                     /locus_tag="VD968_18980"
     CDS             complement(7551..11114)
                     /locus_tag="VD968_18980"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE16530.1"
                     /translation="MITVRRATRRFRLAAFLFCVAAFALQAAAQSNRGTILGVVRDPN
                     GAVVKDAKVTATNVATGEAREATTDDEGNYSIPALEPGNYTLRIEAAGFQPAAVEAVK
                     LETGARQAVDVALTVGNVGGDTVVVTAEAPLAETETSVRGDLITGQQVTDLPIPQRNF
                     TLLATLSPGVTRPFVGVIGGGGNFEAGGNPVGTSTESTRFRESGGSVLVVNGARPTNN
                     NFTLDGTDNNEGQFGQIGIYPPPDAIAEFRIETSVAPAEAGRAGGGIISTTTKSGGND
                     LHGSLYEFYQGRVLSARSRQDKRNEAAGLGLTNRNTHQFGGTVGGPVFLPRPGEGTPY
                     LYDGRNRTFWFAYYEGQRNATPSTTGDFGFVSVPTARMRVGDFGELLRPGTSQTYNTV
                     NGPVVAPRGTVFCGNGLPAPSNDIRNCGQPLSPAALNVLQAYPLPNVTGRIFDNFQTN
                     RKEKYNRNGWGLRFDHNISQSDTLFLAYSSDKSSRARDNNFPIGSSPTGNDLPSGFGA
                     GNEFGDSRGVRLGETHTFSPTVINDARFGATRVEIGIFNTGVGGALGFDPNISANLGI
                     PRTNICGECTGVILLGIEEPFQGGRQNQLEFIGDGGPFYFTSNNFSFGDALTWVRGTS
                     TFKFGGDLRVRQNSNFDAGRAGAIKGQYQYGTGAGGFLAGNYNVPIGPQDSGSGAANF
                     LLGYNPGFTSRGTPGTPPFLSNREISFFGQDDWKVSPTLTLNLGLRWDFFTQPVERFD
                     AQANYNPSNDTLTRAGEGAPGGRDLVQSDFNNFGPSLGFSWSGFRDDKTVVLRGGYAL
                     KYAVDTPGIPGVLQANSPQAGSYGCSFNQLGTAACPQLPARFNLDTGIPLPLVTLNVA
                     PGQTFSPGGGASVVYLHPDINNEMFHQYNLTGQWEFMPNWLAEVGYVGSRGRNLLVVR
                     NIGNSGGGFPGARIVNTRGTVQEIDYTGKSWYDSLQTKLEKRYSRGLSIITSYVWSHA
                     IDNSPGNFCTGGTGPSTCGFANPLRPELDKASADFDVRHRFSFASVWELPFGRGRRFG
                     SDISRAADLIVGGWQINTDLYIQSGPPYSVFANGRRVDLIGDPTPTAEQRARGLELNP
                     AAFREAVTPVFASDPGGPKFGNLGRNVFRGERQEFVNLSVFKNLNFTETVKVQLRAQA
                     YNLFNHVNGFRPDNNLTSGNFGIDTSEQRRRQLEVGLRLVF"
     gene            complement(11485..11691)
                     /locus_tag="VD968_18985"
     CDS             complement(11485..11691)
                     /locus_tag="VD968_18985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16531.1"
                     /translation="MVAPVDISALRHERRARRGHHMLAHLRTEAYPVYRGHIYPPKLG
                     DGGEAPHSYEHNNLLIDESKKRLP"
     gene            11672..11944
                     /locus_tag="VD968_18990"
     CDS             11672..11944
                     /locus_tag="VD968_18990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16532.1"
                     /translation="MSTGATTMRSPGPGERIVVAPVDISALRHERAARRGHHMLAHLR
                     TEAYPVYRRHTYPPRLDGTPDAPHSYERNNLLIDEAKRGLGGTDAG"
BASE COUNT         1780 a         3960 c         4480 g         2057 t
ORIGIN      
        1 tcggcgtcgg gcggtcggtc gcccaagggt ggtaagggct cgtgtggttg gctatctgat
       61 cctgtatgac tttgaggccc atcgagtgcg ccttgtccac aagctcgcgc agcttcctca
      121 tgtcgccgta gtgctcttcg atgccgtaga agtctatggc gccgtagccg tggtagggcg
      181 tggtcgggcg cttggggccg ccctcgacct ccgggtacat ctccctctcg tcgaggcggt
      241 cggtgttgtc atagacaggg ttaatccaga gcgctgtgac gcccaagtct ttcaggtagg
      301 gcaggcgttc gattagcccc tggaagtcgc cgccgtggta gtagcgcccc tttgtgcggt
      361 cgtacaggcc gggcgacttc gccgggttgt tattgttccg gtcgccgtcg gcgaagcggt
      421 cgggcatgat gaagtaaatg acgtcgtcgg gagtgaagcc ctggaagcgc ccgcgccgct
      481 ggacgggctc ggaaacctcg aagtcgaagt cggccgcgcc cgaggcgttg cgcaggcgta
      541 tggagcggcg gccggggcgc gcgcccggct cgatatgaac gtcgaggaac aggtacgtgc
      601 cgcgctcgtt gacgcgcagc aggcccgtct ttaagccgac gccgtcgccg cgcgcggcgg
      661 ccgtcgcggg cgcgaagctt tcggcctcga cgcgcgcgcc cgagaggttg cgcccgcgta
      721 tgagaaggcg cacggggttg acggaatgat tcgcccacca gttcggcggc tcgaccttct
      781 cgacgacggg cgcgccctgc gccgcgcaga cgaccgacga ggcgagcagg aagaaaaggg
      841 tgagggcggc gcgcgcgggt ttggtcttgg tgtctctcat aagctcgggt gtgctgtttc
      901 agccccaggt ctgtttgaac tcgtagctgt cggccgtgtg ctcgggcctg tcggtgagct
      961 gcgggtggcg gccgtaaagc tccgacatgc ggcgcaggcg cgatgtgatt tcgtccgtga
     1021 gagcgcccgc agcgtagcgc caggcccagt tgccggaagt ggtggcgggc gtgttcatgc
     1081 gcgcctcgga gcctaagccc agcacgtctt gcagcgggac gagcgccgtg tcggccgacg
     1141 acgagagcac tgcgcgtatg aagtcccagt gaacctcgga gccgtcgctc ccgaggtagt
     1201 cgagggcgaa gcgcttctcc ttctctatct gctcggcgct gcgcacggac gaggagccct
     1261 cggccttgct gtggaaccag ccggcggccg tgtcgttgtc gtgcgtcccc gtgtaggcga
     1321 cggtgttgcg gacgtagttg tgcggcaagt ccttgttcgt cgtgtcggtc gagaagccga
     1381 actggaatat gcgcatgccg gggaagccga acccgtcgcg aagctcgatg acgtcgggcg
     1441 tgatgaagcc taagtcttct gcgatgatgg gcagcacgcc cagctcacgc tttatggcgc
     1501 ggaacagctc ctcgcccggc gcgaagaccc agcggccgcg ctcggccgtc tcgtcgccgc
     1561 cgggtatctc ccagtaggcg gcgaagcccc ggaagtggtc tatgcgtatc acgtcaacga
     1621 gccgcagcat ggagcgcgcc cgctcgaccc accagccgaa cccttcggcg cgcatggcgt
     1681 cccagtcgta gatggggttg ccccagagct ggcccgtctt gctgaagtag tcgggcggga
     1741 cgcccgcgac gaccgacggc ctcccgtcac ccccgagctt gaagaggtgc ggctttgccc
     1801 aaacgtcggc cgagtcgtgc gcgacgaaga tgggtatgtc gcctattacg ctcacaccct
     1861 tttcatgcgc gtagtcgagc acggccgacc actgccggaa gaagaggaac tgcccgaact
     1921 cgacggcctc aatctcaccg gcgagcctgc ggcgggcctc ttcgagcgcc gccgggtcgc
     1981 ggcgcacgag ttccggctcc cactcggccc aggcgacttc gccgcgctcg ctcttgagtg
     2041 ctcggtagag cgcgtagtcc gggagccagg acgactcccg ctgcttgaat tcatcgaact
     2101 ccccgcgcag gcgcgcgccg gcctcgccct tgaaacgctc gaaggcgcgg cggagcaacc
     2161 ccgacttaaa ggcgattgcc tcccggtact cgactcggcc ctcggagaag gcgggcgcgc
     2221 ccgagaggtc ttcgcgcgag agcagcccgt cctcgacgag ccggtcgggg cttacgagca
     2281 gcgtgttgcc ggcgaaggcc gagaagcact ggtagggcga gttgccgtag ccggtcggcc
     2341 cgagcgggag cacctgccat aggtgctggc ccgccgccgc gaggaagtca acgaacttgt
     2401 acgcctcgcc gcccaaatcg cccacgccgt agccgcccgg taacgacgtg gggtgaagca
     2461 gtatgccgct cgttcttggg aagctcactt aaacctccgg aggcagtttg gcgaaccggg
     2521 acgagttttg tgcccgtcac cgatcttgta gcctgtaggc cgcggccgac cgcgccggca
     2581 gcgtcacttt catcgccccg ccgcccgccg ccgcgccgtc tttagcgacg agcagcggca
     2641 cgagacgcgc gccgtccgcg gcgtcgaggt aagcgacggg gaaggaaatc tccttcggcg
     2701 cggcggcgcg gttgaaggcg acgacgaccg tctcagagcc gtcgcggcgc gcgaaggcgt
     2761 aggcgtccgc gtcgaagaag aggtctgtga gcgagccgcg ccgcagggcc gagtgctcgc
     2821 gccggagccg cagccagtcg cgcgcccact cgaacatcct ctgctcttcg gccgtgcgcc
     2881 cccccttcgt aaaagcgtcg cgcgcgtcgc cggggaagcc gcccgggaag tcgcgccggt
     2941 tgtcggggtc gtcgccgccc cgcatggcta tctcctcgcc gtagtaaatc tggggcgtgc
     3001 cgcgcaccga gacggtgaag gcgaagtgca tcatcgcgcc ttcgagcgtc gcgccttcca
     3061 gagacatgaa gcggcgcgtg tcgtggttgt tagccatcgt caccagccgc gaggcgtccg
     3121 ggtagatggc gtccgcgcgc agcgcgtcgc ggagcgccga cgcgggcagc ttccccgtga
     3181 agaccttgag cgacacgtcc cataggggga agtcgaagac ggcgtccatg cgcgtgtcta
     3241 tgccgtccca cccctctcgg ccgccgatgt agaaggccgt gtgcaaaggc tccacgttcc
     3301 acgcctcgcc caccatccac atgcgcgggt actggcggtc gagcgcggcg ttcaagtccc
     3361 gtatgaagaa gcgcggcagg tactgcacgg tgtcctggcg tatgccgtca atgccggtca
     3421 tgccgaccca ccagagcgag ttctgtatct cgtagcgcgc gacctccgat tcctcctggt
     3481 tcatgtcggg caaatcgtcc gagaaccagc cgtcgagcgc cgtgcggcgc gcgtgctccg
     3541 gcgcgtgcgg cgagtggagg aagtcgccgc ggaaggagtt gaggaagtga cgctcgagcg
     3601 tgccgtggaa ccagttgtcg agcggcgagt ctttcaccca cgggtgctgc gagccgacgt
     3661 ggttggctac ctgatcctgt atgaccttca tccccagcgc gtgggccttc tcgaccagct
     3721 cgcgcagcgt ccctatcgtg ccgaagcggt cttcgacggc gtagtaatca accgcgtggt
     3781 agccgtggta gtaggtgttc gggcaccacg ccttgtcgca gcggttgacg ccgttccagt
     3841 tgtcgtgcca cggcgtcgtc cagacggccg tgacgccgag gtctttgagg tagggcaggc
     3901 gctcgatgat gccgcgcagg tcgccgccgt gccagccgcg ggggttcgag cggtcgttcg
     3961 cctcggcggg gctgcccggc ggcgcgtcgt tcgagcggtc gccgttggcg aagcggtcgg
     4021 catgattagg tagataacgt cgtctgtcgt aacgccccgg aagttgcgcg ccgggtcgag
     4081 cggctcgttt atgcggaacg ggacggtggc ccggcccgcg gccgtctcga cggtgagtgg
     4141 gtagtcgccg ggccgcgcca cggggcttat gtggacgttg acgaagaggt acgtgcctgc
     4201 ggcgttgacg ctcgcgcccg aggcttccgt ccccgccttc gtcgccgcga cgcgcgcgcc
     4261 gtggaggttg ctccctctga tgagcagccg gacggggttg attgtgtggc cggcccacca
     4321 ggagggcggc tcgactttcg tgaccgaggg ggcgcgccct tgcgcgctcg ctcctgcggc
     4381 gagcaggcac agcaggaagc cggccgcgag agacttctgc gggacgggtc tcgtcaatac
     4441 tctcatgcga tctccggggt acgggcaggg attatccgca gaggcacaga gagcacgggg
     4501 aggaatctgt aatttcaaat cctccgcgtc tttgtgtctc cgtggtcaat gccaactcgg
     4561 cgccacagtc aagacggaca ggtattgctt tccgtggacg ataaatctta acggctaaag
     4621 acgcaaactc ccggcgcgcg cctcagggcc gcctggcggc gccgggcgcc gtcgcctcgg
     4681 gcggcggcaa cacgtcggcc gggacggggc cgccgggctc ggcgggcggc gcgccgccgg
     4741 ccttgcgcgc ctcttcgagc cgcctgaagg tggcgagcgc gcgctcggcc tcgtcctttt
     4801 tccttaacct cgaaagcgcg atgaagagct ggtagtggac gccggggtct gtcttgctca
     4861 gtagcgcgcc gcgctcaagg acgggcagcg cctcgtcgta gcgcttgagg cggacgagca
     4921 ggcggccgag gtcgtagtgc gccgggtagt tgtcgcggtc gagccctatc gcgcgccgca
     4981 ggagccgctc cgactcggcg tgctcgccgc gctcgccgag tatgaagccg acgttggcga
     5041 gcgccgccgg gttgtcgggc gcaagctcca acgagcggcg gaagtaacgg agcgcgtcgt
     5101 cgtagagccc ttcggcgcgg gcggcgtagc ccgcgaggta gtggaggacg gggctctcgg
     5161 ggaaacgcgc gagcgccgcg cggaagactt cgtgcgagcg cgcgtagtta cgcagcccga
     5221 agtgcgcgat gccgagccgt atggggtaga gcggctcggc gggctgctgc ccgaccgcgc
     5281 tctcgtagaa ctgtagcgcc gtctcgtagc gtcggttctt gaccaactct tccgcgatca
     5341 tgaagttcgc ctcggcgtat gcgggccgca gcttgaccgc cctctgccag aggccgatgg
     5401 cgttggcgct ctcgccgcgg gcggaggcga cgaggccgag gcggtagaag acctccggct
     5461 cttcgggccg tagcgtcgcc gcgcggcgca gggcgtcctg agactcttcg agcttgccga
     5521 gctggaagag cgcgaggccg aggttgaaga cgacttcgta gttgtccggc cgcagcgcgt
     5581 cggtgagcgc gaagtagcgc gcggcgcggt cgtatgcgcc cgcgtcggcg agcgcgaggc
     5641 cgagcgtgaa gagggcgcgg gggtcttcgc ccgcgcgctg ctcgacctgc gcgaagaggc
     5701 gcttcgagtc ttcggggcgg cccgcgtgcg cgtaggcgtt tgcgagcgtt acgagcagcg
     5761 cgaggtctgc gcccgccggc gcctgaccgt tgcggagccg cgccgccttc tccaaaagcg
     5821 gtatcgcgcg ccggtagtct ttgcgcgagg cgtagatcgc gccgaggttg aaggtcgcct
     5881 gctcgtggcc gggcgcgagg cgcagggcct gttccagcgc ggcggcggcc tcttcggcgc
     5941 ggccgcgctg gccgagtatg acgccgagga gcgccagcgg ctccgcgtcg cgcggggagg
     6001 cgtccacggc cctgcgcgca acggcttccg cctcttcgag ccgccccgcg cgcaggagcg
     6061 cggcggcctc ttggagccgc gcgccgcctt gccgcgcgcc ggccgacggc tgcgaggcgt
     6121 gccgactttt tcgctgcgcg gcgctcgccg gccctgcggc ggcgcagagc aggcagagcg
     6181 cgagggcggt cagttcgagc cgaagcgtga gcatgaaaac tttcgcggcc gggccgtcgg
     6241 cctttcattc ctcgggcgtg cgcgcgggcg cggcgccctg gccggcgagg cggcgcgcct
     6301 cgtgaatcct cttgacgatg gcagactctt cggccgcctc cgcgcgccgg ccgaggcggc
     6361 ggtaggcgat agagagctga tagtgcggct cggggttgtt gggcgcgatc tcggcggcgc
     6421 ggcgcaggtg ctcgacggcc tccgccgcct gccccttcgc gacgagcgcg cggccgagcg
     6481 tgacgcgcgc ctcgtaagag tcggggccga gcgcgacggc gcgctttaag gactcaatcc
     6541 cctcctcgac ctgcccgcgc ctgactagca gcgagccgag gccgaggtgg ccttccgttg
     6601 cgcccggctg ccgcgcgacg agctcgcggt aggcggcgag cgcggcatcg aggtcgccgg
     6661 cgccttcaag cgccgtggcg aggaagaagc gcggtcgcgg gtcgtcgggc ctgagcgccg
     6721 cggccgcgcg gaaggcccgg gctgcgcccg cggggtcgcc gccgccgtag agcgcccggc
     6781 ctagcgtgaa ctgcgcgtcg aagctcgagg gcgagagcgc gacggcgcgg cgcgcggccg
     6841 cgagcgaccc cgcctcgtcg ccccggacgg cgagcacgac ggcgagcagg acgtgcgcgt
     6901 ccgccgcgcc cgcggcgcgc acgcccgcgg gcgggacggc gccttgtgtt ggcggcgagg
     6961 ccggcgcgac ctcggcggcg cgtcgcgcga gcggctcggc ttcggcagcg cgcccggcgt
     7021 tgaaggcggc tagcgcggcg ccgtagagcg cgaagaactc gccgcgcgtc ttcttccctg
     7081 cgagcgccgt gaagaggtct gcggcttcgg cgtagcgtcc ctcgacgagg agcgcgtcgc
     7141 cgagcgtgag ggcgcgcgag aatgcttcgt cgtcgagcgg cgcgcgccgt gcatgctcta
     7201 tggcctcggc gacgcgcgcg gccgggactt ggcccgcggg ctgcgcctgc gcgcagagcg
     7261 cagaggcggc gacgagcgcg ggcgcgagca gggacagaga gagcgcacgc cgtgggccgt
     7321 catcctttct atgcgcgtgt gatcccatcg agtgccgccc cggcgctggc gaatttaaaa
     7381 ggactgttgt ttgtaaattc ggcgggggag attgacgaca agttaacgtc tcgcggcggc
     7441 aaactcaagc gggccgcccc cgccccgaaa gcggaagtgg cgggccgccc cgcgagggac
     7501 gcccgccact tccgagactc ggctgaaatc ggcggccgcg cccgtcccgc ttagaagacg
     7561 aggcggaggc cgacctcgag ctggcggcgg cgctgctcgg aggtgtctat gccgaagttg
     7621 ccgctcgtca ggttgttgtc agggcggaag ccgttgacgt ggttgaagag gttgtaggcc
     7681 tgtgcgcgga gctgcacctt gacggtctcc gtgaagttca agttcttgaa gaccgagagg
     7741 ttgacgaact cctgccgctc gccgcggaat acgttgcggc cgaggttgcc gaacttcggc
     7801 ccgccggggt cgctggcgaa gacgggcgtc acggcctcgc ggaaggccgc cgggttgagc
     7861 tcgagcccgc gggcgcgctg ctcggccgtg ggcgtcgggt cgcctatcag gtcaacgcgc
     7921 cgtccgttcg cgaagaccga gtagggcggg ccgctctgta tgtacaggtc ggtgtttatc
     7981 tgccagccgc cgacgatgag gtcggccgcc cgcgagatgt cggagccgaa gcggcgcccg
     8041 cgcccgaagg gcagctccca gaccgacgcg aagctgaagc ggtggcgcac gtcgaagtcg
     8101 gcgctcgcct tgtcgagctc aggccggagc gggttggcga agccgcaggt cgaggggccg
     8161 gtgccgcccg tgcagaagtt gcccggcgag ttgtctatgg cgtgcgacca gacgtagctc
     8221 gtgattatcg agaggccgcg cgagtagcgc ttctcgagct tcgtctggag gctgtcgtac
     8281 caagacttgc ccgtgtaatc aatctcctgc acggtgccgc gcgtgttgac gatgcgcgcg
     8341 ccggggaagc cgccgccgct gttgccgatg ttgcgcacca ccagcaggtt gcggccacgc
     8401 gacccgacgt agccgacctc ggccagccag ttcggcatga actcccactg ccccgtcagg
     8461 ttgtactggt ggaacatctc gttgttgatg tccgggtgca ggtaaacgac gctggcgccg
     8521 cccccgggcg aaaaggtctg ccccggcgcg acgttgagcg tcacgagcgg gagcgggatg
     8581 cccgtgtcga ggttgaagcg ggccgggagc tgcgggcagg cggccgtgcc gagctggttg
     8641 aagctgcaac cgtagctgcc ggcctgcggc gagttagcct gcaacacgcc ggggatgccg
     8701 ggcgtgtcaa cggcgtactt gagggcgtaa ccgcctcgca gcacgacggt cttgtcgtcg
     8761 cggaagccgc tccaggagaa gccgagcgac gggccgaagt tgttgaagtc gctctggacg
     8821 aggtcgcggc cgcccggcgc gccctcgccc gcgcgcgtca gcgtgtcgtt cgacgggttg
     8881 tagttggcct gggcgtcgaa gcgctcgacc ggctgcgtga agaagtccca gcgcaggccg
     8941 aggttgagcg tcagggtcgg gctcaccttc cagtcgtcct ggccgaagaa ggagatttcc
     9001 cggttcgaca ggaacggcgg cgtgcccggc gtgccgcggc tcgtgaagcc ggggttgtag
     9061 cccaggagga agttggcggc gccggagccg gagtcctgcg ggccgatggg cacgttgtag
     9121 ttgccggcga ggaagccgcc cgcgcccgtg ccgtactggt actggccctt gatggcgccg
     9181 gcgcggccgg cgtcgaagtt cgagttctgg cgcacgcgga ggtcgccgcc gaacttgaag
     9241 gtcgaggtgc cgcgaaccca cgtgagcgcg tcgccgaagc tgaagttgtt cgacgtgaag
     9301 tagaaggggc cgccgtcgcc tatgaactcg agctggttct ggcgcccgcc ctggaacggc
     9361 tcctcgatgc cgagcaggat gacgcccgtg cactcgccgc agatgttcgt ccgcgggatg
     9421 ccgagattgg ccgagatatt cgggtcgaag ccgagcgcgc cgcccacgcc cgtgttgaag
     9481 atgcctatct cgacgcgggt ggcgccgaag cgcgcgtcgt tgatgacggt gggcgagaag
     9541 gtgtgcgtct cgccgaggcg gacgccgcgc gagtcgccga actcgttgcc ggcgccgaag
     9601 ccggagggca ggtcgttgcc cgtcggcgag ctgccgatcg ggaagttgtt gtcgcgggcg
     9661 cgcgagctct tgtcgctgct gtaggcgagg aagagcgtgt cgctctggct gatgttgtgg
     9721 tcgaagcgca ggccccagcc gttgcggttg tacttctctt tacggttcgt ctggaagttg
     9781 tcgaagatgc ggccagtgac gttcggcaga gggtacgcct ggagcacgtt cagcgcggcc
     9841 ggcgagagcg gctggccgca gttgcgtatg tcgttcgacg gcgccggcag gccgttgccg
     9901 cagaagaccg tgccgcgcgg cgcgactacg gggccgttga cggtgttgta ggtctgcgag
     9961 gtgccgggcc ggagcagctc gccgaagtcg ccgacgcgca tgcgcgcggt cgggacgctg
    10021 acgaagccga agtcgccggt cgtcgagggc gttgcgttgc gctgcccctc ataataggcg
    10081 aaccagaagg tgcggttgcg cccgtcgtag aggtagggcg tgccttcgcc ggggcgcggc
    10141 aggaagacgg ggccgccgac ggtgccgccg aactggtgcg tgttgcggtt ggtcaggccg
    10201 aggcccgccg cctcgttcct cttgtcctgg cgcgagcgcg cgctcagcac acgcccctgg
    10261 tagaactcgt agagcgagcc gtgcaggtcg ttgccgcccg acttggtcgt cgtgcttatg
    10321 atgccgccgc cggcgcggcc cgcctcggcc ggcgcgacgc tcgtctcgat tctgaactcg
    10381 gcgatggcgt ccggcggcgg gtagatgcct atctgcccga actggccctc gttgttgtcg
    10441 gtgccgtcga gcgtgaagtt gttgttcgtg gggcgcgcgc cgttgacgac gaggacggag
    10501 ccgccggact cgcggaagcg cgtcgattcg gtcgaggtgc ccacggggtt gccgcccgcc
    10561 tcgaagttgc cgccgccacc tatgacgccg acgaacgggc gcgtcacgcc cggcgagagc
    10621 gtggcgagaa gcgtgaagtt gcgctgcggg atgggcaggt cagtcacctg ctggcccgtt
    10681 atgaggtcgc cgcgcacgct cgtctcggtc tcggcgagcg gcgcctcggc cgtgacgacc
    10741 acggtgtcgc cgcccacgtt gccgaccgtg agtgccacgt caacggcctg gcgggcgccc
    10801 gtctcgagct tcacggcctc gaccgccgcc ggctggaagc ccgcggcctc gatcctcagc
    10861 gtgtagttgc cgggctcgag cgccggtatc gagtagttgc cctcgtcgtc cgtagtcgcc
    10921 tcgcgggcct cgcccgtggc gacgttcgtc gccgtgactt tcgcgtcctt gacgaccgcc
    10981 ccgttcgggt cgcggactac gccgagaatc gtccccctgt tgctctgggc cgccgcctgt
    11041 agggcgaagg cggcgacgca gaaaagaaac gccgctagcc tgaagcggcg cgtagctctc
    11101 cttactgtga tcatgtgcgt gggcctcgca tgcggaaaag ggctcgggcg cccgtcacgc
    11161 ctccgcctgt tctcgaaggg gctagaaggg gctagcgact ttgccctgtg agcggcggag
    11221 tggaacctgt aagtttttct ttgctgtccg cggatgaaca gaagacttcg gtttgttgcc
    11281 tgtccgaacg aagtaactat taatatagaa tcacttgtct gtcaatcaat ttctccgcgg
    11341 gcggccgcgc cgcggagagg ttttgccaca agcaacaaaa gtgccattcc ttcgccgttg
    11401 gggtttacgg gcaaaggcgc ccgcgcgagg ccccgcgcct gttcaacttt tcgtcgcccc
    11461 atccaaaaac ctaaatttcg gctgctacgg gagtcgcttt tttgactcgt ctatgaggag
    11521 gttgttgtgc tcgtaggagt gaggcgcctc gcctccgtcg cccagcttcg gcgggtagat
    11581 gtggccgcga tagaccgggt aggcttccgt gcgcaggtgg gcgagcatgt ggtggccgcg
    11641 gcgcgcgcgg cgctcgtgcc ggagggcgga gatgtcaacg ggcgcgacca cgatgcgctc
    11701 gcccggcccc ggcgagcgaa tcgtcgtcgc gcccgtggac atctcggcgc tgcgccacga
    11761 gcgcgccgcg cgccgcggcc accacatgct cgcccacctg cggacggaag cctaccccgt
    11821 ctaccgtcgc cacacatacc cgccgcgcct cgacgggacg cccgacgcgc cgcactctta
    11881 cgagcgcaac aaccttctca tagacgaggc caaacggggc ctcggcggga cagacgcggg
    11941 gtgagcggcg ccgcccgcgc gtcgctcacg acccgccccg tagaaattcg ttgacaggca
    12001 attgattctg tattacaaac acttcgttcg gacaggcaac aaacgtcccg taattttcta
    12061 tctcgaaaag tccctcattg cttaggcggt cgactgcaac tgaccgtcgc acacctgtca
    12121 gttttggtgt gagtctgcgg ctatcggttc aagggcgacg ggcccgacgc gtccgtccat
    12181 aatcgaggtt tggtatgact acactccgca aaggctccgc aggtcttcta cgcgccgtct
    12241 gctccgtcct cctgatagcc gcgttcgcgc tgacggc
//
LOCUS       DASPKR010000725         2609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_636263, whole genome shotgun sequence.
ACCESSION   DASPKR010000725 DASPKR010000000
VERSION     DASPKR010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2609)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2609
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_636263"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1011)
                     /locus_tag="VD968_18995"
     CDS             complement(<1..1011)
                     /locus_tag="VD968_18995"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYE16533.1"
                     /translation="MTTNPAPAPGDYKIWNVITASAVGTMIEWYDFYIFGSLATVISP
                     LFYPPGNDTLALIAYLSTFAVGFVVRPFGALFFGRIGDLVGRKYAFLITLLIMGGATA
                     LIGFLPTYATIGIAAPVILLVIRVLQGLALGGEYGGAAVYVAEHVPDGRRGFYTSFIQ
                     ITATLGLFVSLAVILAVQGSMSREAFTSWGWRVPFLISIALVGVSLYIRLRMKESPIF
                     SHIKGAGMTSARPLREAFTRWENLKRVLVSLFGATAGQGVVWYAGQFYALFYLQTILK
                     VNGTSANYIVAVALLLGMPLFVFFGALSDRVGRKWIIMAGCLLAAVSYIPIYKAMQRA
                     AGS"
     gene            1149..2393
                     /locus_tag="VD968_19000"
     CDS             1149..2393
                     /locus_tag="VD968_19000"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16534.1"
                     /translation="MRYIYSFYAESLRIAVQSISAHKLRAFLTLIGIIIGVASVVVVG
                     AAISGLNTYVTEKVTKMLGANHFMIARMASPGQLSEEELEKRNRRNPMLEMADMEWLR
                     EHCRMCSAVGAQTGRGTNFEQDGKRFLGGIVFGVTANMAEIEDKDMSEGRFIEPPEVE
                     NAQLVVVLGADIKDKFFPDEDPLGKTLKVGGLPMRVVGVEERRGPIFGDLVDKHVYIP
                     ITTYGRVYGRPRDIQIHGKGGSRDQFQLTIEDARTALRNYHKLSGSAEDDFGLVNTEE
                     LGGQIDQFTGAIALVVTPITLISLVVGGIVVMNIMLVSVTERTFEVGLRKALGARRKQ
                     ILLQFLIESALLCAFGGVLGLLLATGIAWLISTTTPITMTITLTYVALSVGVSSVIGL
                     VAGIYPAFKASRLDPIVALTRN"
     gene            2398..>2609
                     /locus_tag="VD968_19005"
     CDS             2398..>2609
                     /locus_tag="VD968_19005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16535.1"
                     /translation="MRFRLPGLITKEILAMALDSIRSHKFRSALTVLGIVIGVMTAIT
                     VAALLTGLRGSLVKIVEEYGVNNIYA"
BASE COUNT          507 a          828 c          849 g          425 t
ORIGIN      
        1 cgacccggcc gcgcgctgca tcgccttgta aatcgggatg taggagacgg ccgcgagcag
       61 gcaccccgcc atgattatcc acttgcgccc cacccggtct gagagcgcgc cgaagaagac
      121 gaagagcggc atccccagca ggagcgccac ggcgacgatg tagttggcgg aggtgccgtt
      181 caccttcagg atggtctgca ggtagaagag cgcgtagaac tgccccgcat accagacgac
      241 cccctgcccc gccgtcgccc cgaagagcga gacgagcacg cgctttaagt tctcccagcg
      301 cgtgaacgcc tccctgagag gccgcgccga agtcatcccg gcgcccttga tgtggctgaa
      361 gatgggcgac tccttcatcc tcagccgtat gtagagcgag acgccgacga gcgcgatgga
      421 gatcaggaaa ggcacgcgcc agccccaact ggtgaacgcc tcccggctca tcgagccctg
      481 cacggcgagg attacggcga gcgagacgaa gagcccgagc gtcgccgtta tctgtatgaa
      541 gctcgtgtag aagccgcggc ggccgtccgg cacgtgctcg gccacataga cggccgcgcc
      601 gccgtactcg ccgccgagcg cgagcccctg aagcacccgt atcaccagga gaattacggg
      661 cgccgctatc cctatggtcg cgtaggtcgg aaggaacccg atgagggccg tcgccccgcc
      721 cattatcaac agcgtgatga ggaaagcgta cttgcggccg accagatcgc ctatgcggcc
      781 gaagaatagc gccccgaagg gccggacgac gaagccgacg gcgaaggtcg agaggtaggc
      841 gatgagcgcg agcgtgtcgt tgcccggcgg gtagaagagc ggcgagatta cggtggcgag
      901 gctcccgaag atgtagaagt cgtaccactc gatcatcgtg ccgacggccg aggccgttat
      961 tacgttccag attttgtagt cgcccggcgc cggggcgggg tttgtcgtca tgggttgccg
     1021 ggttatagag gaggcggggg cggggcgtca agccttttcg caattatcag taaacctgcg
     1081 ccccgccgcg ttcgtatagc caaacgccca acctttcgcc cctcggggcg ggcaagcaac
     1141 agagcggaat gcgctacatt tactccttct acgccgaatc cctgcgaatc gcggttcagt
     1201 ccatctccgc gcacaagctg cgcgccttcc tcactctgat aggcatcatc ataggggtcg
     1261 cttcggtcgt cgtggtgggc gccgccatat cgggcctgaa cacctacgtc acggagaagg
     1321 tgacgaagat gctgggcgcg aaccacttca tgatcgcgag gatggcgagc cccggccagc
     1381 tctcggagga ggagctggag aagcgcaacc gccgcaaccc catgctcgag atggccgaca
     1441 tggagtggct gcgcgagcac tgccgcatgt gcagcgccgt gggcgcgcag accgggcgcg
     1501 gcaccaactt cgagcaggat ggcaagcgct tcctcggcgg catagtcttc ggcgtgacgg
     1561 ccaacatggc cgagatcgaa gacaaggaca tgagcgaggg gcgcttcatc gagccgcccg
     1621 aggtggagaa cgcccagcta gtcgtagtcc tcggtgcaga catcaaggac aagttcttcc
     1681 ccgacgaaga ccccctgggc aagaccctga aggtcggcgg cctccccatg cgcgtcgtgg
     1741 gcgttgagga gcggcgcggc ccaatcttcg gcgacctcgt tgacaagcac gtctatatcc
     1801 cgatcacgac ctacgggcgc gtttacggcc gcccgcgcga catacagatt cacggcaagg
     1861 gcggctcgcg cgaccagttc cagttgacga tagaggacgc gcgcacggcc ctccggaact
     1921 accacaagct ctcgggcagc gccgaggacg acttcgggct ggtgaacacg gaagagctgg
     1981 gcgggcagat agaccagttc acgggcgcca tcgcgctcgt cgtcacgccc atcacgctca
     2041 tctcgctcgt cgtcggcggg atcgtcgtga tgaacatcat gctcgtctcc gtcacggagc
     2101 gcaccttcga ggtgggcctg cgaaaggcgc tgggggcgcg gcgcaagcag atactcttgc
     2161 agttcctgat tgagtcggcg ctgctttgcg cgttcggcgg tgtgctcggc ctgctgctgg
     2221 cgaccgggat agcgtggcta atctcgacga ccacgcccat cacgatgacg ataacgctga
     2281 cttacgtcgc gctctccgtg ggcgtctcca gcgtgatagg gctggtggcc ggcatctacc
     2341 cggccttcaa ggcttcgcgg ctcgacccca tcgtcgcgct aacgaggaac tgaaccgatg
     2401 cgattccgac tgcccggcct catcaccaaa gaaatcctcg cgatggcgct cgacagcata
     2461 cgctcgcaca agttccgcag cgcgctgacg gtgctcggca tcgtcatagg ggtgatgacg
     2521 gcgataaccg tggcggcgtt gctgacgggc ctgcgcggga gcctcgtcaa gatagtcgag
     2581 gagtacggcg tcaacaacat ctacgcctt
//
LOCUS       DASPKR010000726         3621 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_757487, whole genome shotgun sequence.
ACCESSION   DASPKR010000726 DASPKR010000000
VERSION     DASPKR010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3621)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3621
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757487"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..492
                     /locus_tag="VD968_19010"
     CDS             <1..492
                     /locus_tag="VD968_19010"
                     /inference="COORDINATES: protein motif:HMM:NF014874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyanophycin synthetase"
                     /protein_id="HYE16536.1"
                     /translation="LRACGGAPGRFERVPHDGDFSVVVDYAHTDDALRNVLRTAREVT
                     RGRVITVFGCGGDRDRTKRAPMGEAAARLSDVVIATSDNPRTEDPAAILADIEVGLRA
                     VGKPYGKVVDRREAIRLAVGQARAGDLVLIAGKGHEDYQIIGTEKQHFDDREVAAEAL
                     RSR"
     gene            507..1418
                     /locus_tag="VD968_19015"
     CDS             507..1418
                     /locus_tag="VD968_19015"
                     /inference="COORDINATES: protein motif:HMM:TIGR01777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HYE16537.1"
                     /translation="MRVIVTGSTGMIGRALVRSLLSEGHQVTQLVRGAAQEFSAPGTA
                     AVRWDPSEGFIQREALEGHDGAVHLAGEPVGEGKWTDEKKRRIRESRERGTRLLAETL
                     ASLERKPRVLVSASAVGCYGDRGDELLTEESAPGNDFLSQVCREWEAATLPAAEAGVR
                     VVNIRIGIVLSGEGGALKKMLTPFKLGAGGRLGSGRQYMSWIALDDVLGVIKHALADE
                     RLRGPVNTVAPAPVRNAEFTKALGRVLGRPTVLPMPAFAVRLAFGEMGEALLLGGQRV
                     VPKRLEETGYRFAYPDLEGALRHALKK"
     gene            complement(1438..2883)
                     /locus_tag="VD968_19020"
     CDS             complement(1438..2883)
                     /locus_tag="VD968_19020"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYE16538.1"
                     /translation="MSERNQTITLVRGLTLVAAVSIIIGNVIGTGVFLKARVMTCNVG
                     TPGMVITVWVVAGLLSLAGALTYAELAAMMPRAGGEYVFMREAYGSGASFLYGWMQVF
                     IAKTGSQASVATALAIFLNDLSGGALGQTFFTADLFGFKVPFGTLQAVALSSIIVFTA
                     VNCAAVVVSGWVATVLTVVKVALVLGVGAGAFLLADGSWGNYASSAGAGAACEGVAAG
                     ARLGVAGFGAAMLGALWGYDGWNNLTLVAGEVKRPQRNIPLALVGGTITIIVLYVFVN
                     VAYFYVLDPTAVAGVSAKSSVAREVAVRFLGPAAVTLMAAGLLASSVGTLHTSILTGA
                     RVPYAMARDGLFFQNLARLSPKTRVPVGALIVQGLWACLLALSGSFDTLTDYVIFGSW
                     IFYGLVTASIFLFRRRMPHAERPYRAWGYPVVPVLFLVVTGFLLVNTLLTTPTQALIG
                     LALIAAGLPVYYFFFRHRRIAVEGPATGEEE"
     gene            complement(2880..>3621)
                     /locus_tag="VD968_19025"
     CDS             complement(2880..>3621)
                     /locus_tag="VD968_19025"
                     /inference="COORDINATES: protein motif:HMM:NF012500.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16539.1"
                     /translation="FKTMWEHLSAVHRETGHALEHINLGGGIPVNYLRDRSQADELPE
                     PEREMLGAELEPADVLEAALRAARDSARDAGAEHLLDRVTVLLEPGRSVIADAGLLLT
                     TVRNIKRRPETGDVWLLTDAGFNLLLSMSTYKWYYQLVSASRASAPHDARYKVAGPLC
                     DSGDVYFDIERGGRLPDYRKLPAGVRPGELLALLNTGAYTVAQMFPYNGRPLPAAVMV
                     RDGGRADLIRRGDSYEDLLAGDIWQEGS"
BASE COUNT          627 a         1194 c         1298 g          502 t
ORIGIN      
        1 ctcagggcct gcggcggcgc gcccggccgc ttcgagcggg tgccgcacga cggcgacttc
       61 tccgtcgtcg ttgactacgc gcacaccgac gacgcgctca ggaacgttct gcgcacggcg
      121 cgcgaggtca cgcgggggcg cgtcataacc gtctttggct gcggcggcga ccgcgaccgc
      181 acgaagcgcg cgccgatggg cgaggccgcc gcgcgcctct ccgacgttgt aatcgcaacc
      241 tccgacaacc cgcgcaccga agaccccgcg gccatactcg ccgacatcga ggtgggcctg
      301 cgcgccgttg gcaagcctta cggcaaggtc gttgaccgcc gcgaggccat acgcctagcc
      361 gtcgggcagg cgcgcgcggg cgacctcgtc ctcatcgccg gcaagggcca cgaagactac
      421 cagataatcg ggactgagaa gcagcacttc gacgaccgcg aggtcgccgc ggaagcttta
      481 agaagccgct gaagggggag caacggatga gagtcatcgt cacgggctcg accggcatga
      541 taggccgcgc gctggttcgc tcgcttctgt ccgaggggca tcaggtgacg cagctcgtgc
      601 gcggcgccgc gcaggagttc agcgcgccgg ggacggccgc ggtgcgctgg gatccgtcgg
      661 agggcttcat acagcgagag gcgctcgaag gccacgacgg ggcggtgcac ctcgcgggcg
      721 agcccgtcgg cgaggggaag tggactgacg agaagaagcg gcgcatacgc gagagccgcg
      781 agaggggaac gcggcttctt gctgagacgc tcgcgtcgct cgaacggaag ccgagggttc
      841 tggtctcggc ctcggccgtc ggctgctacg gcgaccgcgg cgacgagctt ctgacggagg
      901 agagcgcgcc gggcaacgac tttttaagtc aggtctgccg cgagtgggag gcggctacgc
      961 tgcccgctgc cgaggcgggc gtgcgcgtcg tcaacatccg aatcgggata gtgctgagcg
     1021 gcgagggcgg ggcgctgaag aagatgctga cgcccttcaa gctcggggcg ggggggcgcc
     1081 tgggcagcgg ccggcagtac atgagctgga tagcgctcga cgacgtgctg ggcgtcatca
     1141 agcacgcgct cgcggacgag aggcttcgcg gccccgtcaa caccgtcgcg ccagcgcccg
     1201 tcaggaacgc cgagttcacc aaagcgctcg ggcgcgtgct cggccgcccg accgtcctcc
     1261 ccatgcccgc cttcgccgtc cgcctggcct tcggcgagat gggcgaggcg cttctgctgg
     1321 gggggcagcg cgtcgtgccg aagcgtttgg aggagaccgg ctaccgcttc gcctatcccg
     1381 atctggaagg tgcgctacgc cacgcgctga agaagtgatg acgactcaac aaagcggcta
     1441 ctcctcttcg cccgtggccg gcccttcgac ggcgatgcgc cggtgtcgga agaagaagta
     1501 atagacggga aggcccgcgg cgatgagggc gaggccgatg agggcctgcg tcggcgtcgt
     1561 caggagcgtg ttgacgagca ggaagcccgt gactacgagg aagagcacgg gcacgacggg
     1621 gtatccccac gcccggtagg gcctctcggc gtgcggcatc cgtcggcgga agaggaaaat
     1681 ggatgcagtc acaagcccgt agaaaatcca cgagccgaag attacgtagt cggtgagcgt
     1741 gtcgaacgag cccgagagcg cgagcaggca ggcccaaagc ccttgcacta tgagcgcgcc
     1801 gacgggcact cgcgtcttcg ggctcagccg cgcaaggttc tggaagaaga ggccgtcgcg
     1861 cgccatcgcg taaggcacgc gcgcgcccgt caaaatcgag gtgtggagcg tgccgaccga
     1921 cgaggccaga aggcccgccg ccatcagcgt gaccgccgcc gggccgagga agcgcacggc
     1981 tacctcgcgg gcgaccgaag acttcgccga gacgcccgcc acggccgtcg ggtcgagcac
     2041 gtagaagtac gcgacgttga cgaagacgta gagcacgatg atcgtgatcg tccctccgac
     2101 gagcgccaga gggatgttac gctgcgggcg cttcacctcg cccgcgacca gcgtcaggtt
     2161 gttccagccg tcgtagcccc agagcgcccc aagcatcgcc gccccgaagc ccgccacgcc
     2221 cagacgcgcg cccgccgcaa cgccctcgca cgccgccccc gcgcccgcag acgaggcgta
     2281 gttgccccag ctcccgtccg cgagcaggaa cgcgcccgcg ccgacgccca gcaccagcgc
     2341 gaccttcacg accgtcagca cggtcgcaac ccacccgctc acgaccaccg cggcgcagtt
     2401 tacggccgtg aagacgatga tggacgaaag cgccacggct tgcagggtgc cgaatggcac
     2461 cttgaagccg aacaggtcgg ccgtgaagaa ggtctgcccg agcgcgccgc ccgaaaggtc
     2521 gttgaggaag attgcgagcg cggtcgcgac cgacgcctgc gagccggtct tggcgatgaa
     2581 gacctgcatc cagccgtaga ggaaacttgc gccggagccg taagcctcgc gcatgaagac
     2641 gtactcgccc cccgcccttg gcatcatcgc cgcaagctcg gcgtaggtga gcgcgcccgc
     2701 cagggagagc agccccgcca cgacccagac ggttatgacc atccccggcg tcccgacgtt
     2761 gcacgtcatc acgcgcgcct tcaggaagac gcccgtgcct atgacgttgc cgatgatgat
     2821 ggagacggcc gcgacgagcg tcagcccgcg cacgagtgtg atggtctggt ttcgctcgct
     2881 catgagcctt cctgccagat gtcgcccgcg agtaagtctt cgtagctgtc gccacggcgt
     2941 atcaggtctg cgcgcccgcc gtcgcgaacc atgacggcgg cggggagcgg gcggccgttg
     3001 taggggaaca tctgcgcgac ggtgtaggcg cccgtgttaa gaagtgcgag cagctcgccg
     3061 ggccgcacac cggcgggcag cttgcggtag tcgggcaggc ggccgccgcg ctctatgtcg
     3121 aagtaaacgt cgccggagtc gcacagtggc cccgcgacct tataacgggc gtcgtgcggc
     3181 gccgaggcgc gcgaggccga gacgagctgg tagtaccact tgtaagtgct catcgagagc
     3241 agcaggttga agccggcgtc cgtgaggagc caaacgtcgc ctgtctcggg ccgccgcttg
     3301 atgttgcgaa cggtggtgag cagcagtccg gcgtcggcga tgacgctgcg gcccggctct
     3361 aggaggacgg tgacgcggtc gagcaggtgc tcggcgcccg cgtctcgcgc ggagtcgcgt
     3421 gcggcccgga gcgccgcttc aagaacgtcg gccggctcta attcggcgcc gagcatctca
     3481 cgctcgggct cgggcagttc gtcggcctgc gagcggtcgc ggaggtagtt gacggggatg
     3541 ccgccgccga ggttgatgtg ctctaaggcg tggccggtct cgcggtgcac ggccgagagg
     3601 tgctcccaca tcgtcttgaa g
//
LOCUS       DASPKR010000727         2970 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_375237, whole genome shotgun sequence.
ACCESSION   DASPKR010000727 DASPKR010000000
VERSION     DASPKR010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2970)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2970
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375237"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..1207)
                     /locus_tag="VD968_19030"
     CDS             complement(143..1207)
                     /locus_tag="VD968_19030"
                     /inference="COORDINATES: protein motif:HMM:NF025690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4388 domain-containing protein"
                     /protein_id="HYE16540.1"
                     /translation="MALTGQLSDMSLAELIEFFCNQRKTGRLKIDYPRGHSVFFIKDG
                     ELVDARVGALSGAEAVYFSLTLPNAAFDFSPEVLPQHRTINVPWTQVVLEGLRRLDEG
                     QSPTEADAFGAWSPNDSDMVAMLDHVERLGEKAPQKAAAREAEKEEDEGRAVPAAEPL
                     SMMVEGAGDSGGRRKWVLVGVAACVLLACAVAAIPLSGRMGRKPAAAPKQESTQAAPQ
                     PAPAPEEAGAPATTAEAVTEAAQPGAEGEAAAATAAAEARRERERRERERRERERREE
                     EKKSESAEAAKPAPTPAAGPKLVRVAVSYDESGRVTQASVAGASPGAEAYGSTAVRVA
                     RGKRFPTGKAGTTVITIPVN"
     gene            complement(1262..2299)
                     /locus_tag="VD968_19035"
     CDS             complement(1262..2299)
                     /locus_tag="VD968_19035"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HYE16541.1"
                     /translation="MLKRTSPTLALALLLALSTTAAANDREQDGLAGPVRRVKTETAK
                     ITVKNGRPVEGPRTPLEATTYDMKGARVDNAYFLAAGGSLTGKEVYKYDERGNIVEMT
                     LHNDDGSLLSKETYAYEFDALGNWVKMTTSVAVIEGGKVTFEPSEVTYRAISYYLDEA
                     TMAKLSQPAPPAPAATPSAGQQQAVADSKAAAKSVAAPVVLASLDKPASVAPTTVAPV
                     SNSGAGSSAAPAVKAEELAAAPPAARPAASRGPSKPVSGGILNGKALSLPPPAYPEIA
                     RRARTGGTVEVEVVIDVTGNVISAKAVKGPGLLQGAAEQAARQAKFTPTLLSGQPVKI
                     SGTITYNFTLQ"
     gene            complement(2572..>2970)
                     /locus_tag="VD968_19040"
     CDS             complement(2572..>2970)
                     /locus_tag="VD968_19040"
                     /inference="COORDINATES: protein motif:HMM:NF013257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HYE16542.1"
                     /translation="AELASRLETEDSVRVVLFAGPEERALVKRLRTAFPPSIVVLDRL
                     TIPQLAAAAARLSVFVSNDTGPMHIAAAVGTPVVVLLARHPMSDCYVPVGERHRVVSA
                     ARIEDISVEAARDAARSAFTTERMSSLFST"
BASE COUNT          423 a          967 c         1070 g          510 t
ORIGIN      
        1 tcggcgccgt cggcctgtta gaggctagag actagaggct aggggctggt tttagtctgt
       61 gccgttgcgg ccgcctgtta tcagcagggc gacacggcaa agaccataac tagcccctag
      121 cctctagtct ctagcctctt cgtcagttga cggggatggt gatgacggtc gtgccggcct
      181 tgcccgtggg gaagcgcttg ccgcgcgcga cgcgcacggc cgtagagccg taggcttcgg
      241 cgccggggct cgcgcccgcg accgacgcct gcgtgacgcg gcccgactcg tcgtagctga
      301 cggcgactcg cacgagcttc ggccccgcgg cgggggtcgg cgcgggcttg gccgcctcgg
      361 ccgattctga tttcttctct tcctcgcgcc tctcacgctc gcgcctctca cgctcgcgcc
      421 gttcgcgctc tcgccgcgct tcggctgccg ccgtcgcggc tgcggcctcg ccttcggcgc
      481 ccggctgcgc cgcttcagtc acggcctcgg ccgtcgtcgc gggagcgcct gcctcttcgg
      541 gcgcgggcgc gggctgcggc gcggcctgcg tgctttcttg ctttggcgcc gcggcgggct
      601 tgcggcccat gcggcccgaa agcggtatgg cggcgaccgc gcacgcgagc aggacgcacg
      661 cggcgacgcc taccagaacc cacttcctgc ggcctccgct gtcccccgcg ccttcgacca
      721 tcatcgaaag cggttcggcc gcggggacgg cgcgcccctc atcctcttcc ttctcggcct
      781 ccctagcggc cgccttctgc ggggccttct cgccgagccg ctcgacatgg tcgagcatgg
      841 cgaccatgtc cgagtcgttc ggcgaccacg cgccgaaggc gtcggcctcg gtgggcgact
      901 gcccctcgtc caaacggcgc aaaccttcga gcacgacctg cgtccaggga acgttgatgg
      961 tgcggtgctg cggcagcacc tccgggctga agtcgaaggc ggcgttcggc agggtcagag
     1021 agaaatagac ggcctcggcg ccggagagcg cgccgactcg cgcgtcaaca agctcgccgt
     1081 ctttgatgaa gaagacgctg tggccgcgcg ggtagtctat cttgagccgg cccgtcttgc
     1141 gctggttgca gaagaactcg ataagctcgg cgagcgacat gtcgctcaac tgtccggtca
     1201 gtgccattga agtgttcctc gttcgtggag ggcctggggc ggaaagcgtg agccgggggc
     1261 tctattgcag cgtgaagttg taggtgatgg tacccgagat tttgacgggc tggcccgaca
     1321 ggagcgtggg cgtgaacttg gcttggcgcg cggcctgctc ggcagcgccc tgcaagagcc
     1381 ccggcccctt cacggcctta gccgagatga cattgcccgt aacgtctatg acgacctcga
     1441 cctcgaccgt gccgcccgtg cgcgcgcgtc gcgctatctc ggggtaggcg ggcggcggga
     1501 ggctcagggc cttgccgttg agtatcccgc ccgagacggg cttggaaggc ccgcgcgacg
     1561 cggcggggcg ggccgcaggg ggcgcggccg caagctcctc ggccttgacg gcgggcgcgg
     1621 ccgacgagcc ggcgccggaa tttgagacgg gcgcgacagt cgtcggcgcc accgaggcgg
     1681 gcttgtccaa cgaggcgagc acgaccgggg cggccacgct cttcgccgcg gccttgctgt
     1741 cggccaccgc ctgctgctgc ccggcgctcg gggtagcggc gggcgctggc ggcgcgggct
     1801 gcgagagctt cgccatcgtc gcctcgtcga ggtagtagga gatggcccgg taagtgacct
     1861 ccgacggctc gaacgtgacc ttgccgccct cgatgacggc gaccgacgta gtcatcttca
     1921 cccagttgcc gagggcgtcg aactcgtagg cgtaagtctc tttgctcagg agagagccgt
     1981 cgtcgttgtg cagcgtcatc tcgacgatgt tgccgcgctc gtcgtactta tagacctcct
     2041 tgcccgtgag cgagccgccg gccgccagga agtatgcgtt gtcaacgcgc gcgcccttca
     2101 tgtcgtaggt cgtcgcctca agcggcgtgc gcggcccttc gacgggcctg ccgttcttga
     2161 ccgtaatctt ggccgtctcg gtcttcacgc ggcggacggg gccggcgagc ccgtcctgct
     2221 cgcggtcgtt cgccgcggcc gtggtcgaga gggccagaag gagggcgagc gccaaagtcg
     2281 ggcttgtccg tttgagcatg agctttcact cctgaaaatt tgcgcgggtg gcggaaccgg
     2341 ggctccggcg gcgggcctgg cggcggcttc ggaaggcggg gcggataagt tgtcgcgcct
     2401 ttgcggcctg cggtgtgaga gttaaggccc gaggcccgcc cgctgcccgt aaatgcacgg
     2461 acagcaataa caattataca gattgaactc agtttgtcta ttaaaaacct ttgccaacat
     2521 acgggcgggc gcaaaggtaa gttcgggcgg gcttcgctcg ggggaaggag gctaagtcga
     2581 gaagagagaa gacatacgct cggtcgtgaa ggccgagcgg gcggcgtcac gggcggcctc
     2641 cacacttatg tcctcgattc tcgcggcgga gacgacgcgg tggcgctcgc cgacggggac
     2701 gtagcagtct gacatggggt gtcgggccag aagcacgacg acgggcgtgc cgacggccgc
     2761 ggcgatgtgc ataggccccg tgtcgttcga gacgaagacg gagaggcgag ccgcggccgc
     2821 ggcgagctgc gggatggtca ggcggtcgag cacgacgatc gagggcggga aggccgtgcg
     2881 caacctcttg accagcgcgc gctcctcggg gccggcgaag aggacgacgc gcacggagtc
     2941 ttccgtctcc aagcggctcg caagctccgc
//
LOCUS       DASPKR010000728         6701 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_636597, whole genome shotgun sequence.
ACCESSION   DASPKR010000728 DASPKR010000000
VERSION     DASPKR010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6701)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6701
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_636597"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(210..779)
                     /locus_tag="VD968_19045"
     CDS             complement(210..779)
                     /locus_tag="VD968_19045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16543.1"
                     /translation="MSKTPTITPESFDALLAWLDPDRERAGEKYEEIRRRLIKIFNAR
                     GCPEAERLADLTLDRVTRKVPAVAGDYDGDPALYFYAVANKIFLESLRERKKSEARVP
                     PEAAPTPEKEQRYACLDRCMAKLTPRNRELILEYYRAERREKIDRRRELASGMGVALN
                     ALRIRACRIRATLYECVRACMEAEIRNEI"
     gene            complement(823..4095)
                     /locus_tag="VD968_19050"
     CDS             complement(823..4095)
                     /locus_tag="VD968_19050"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HYE16544.1"
                     /translation="MSCKSDERPRARGRGSRPRAAAALAAAVLLQLACLAAARANAAA
                     GGDAFAAERAVAEGRELFEGWTEVSLRGAAAKFEEARAASRAAGDPGGEAAAANLAGE
                     VYFTLSEYARSLDSYRAALGPARAARDRAAEVEALNGVANVLVYLGRGREAAAYCRRA
                     LDLSRAAGDTRGEARSLANTGAALYFEGDMRGAEESLTRALALWPKGDGRGKVQALLD
                     LGYVRYDLRDVDGALGHYDQALQLSRASNYRRGEALALTAAGSVEAYLGKRQAALASH
                     NRAARLFREMGERNGEAVASNGLGYVYRSLGEYARALECYDRARRLFAALGNREYETF
                     TLTRVGNSYQGLGEHERALECYRETLRRSVRYPQTRANALNLIGTVYAETGETRLALE
                     NFGRALALYRSVRDRMGEAGVLANIGGAHESAGRREKALEHYRLALALSRATSDRAGE
                     VSALFRLAGALRDAGDLEGALAQMEASLSLVESLRTQVLSRDLGASYSASVHRHYELY
                     IDLLMRLDRRDPARGHAARALQASERARARGLFDTLTDFRDDIRRGAPPALLDKAHAL
                     NLALERVQERRARLSAGDDEQAAALSAEAQSLASELEEVESRMREESPAYAALVRPQS
                     LGLEEIQREVLADGETALLEFSLGDSASYLWAVTKDGMTWRELPARAEIERAVRSAYE
                     LLTARHRRPEGESAAAFEARVAAADAEYWRQAAALSELILGPVAGELKAKRLLVVADG
                     ALQYVPFAALPLPHGAPRPAQAAAAIADNGDTVPLVVTHEIVNLPSASIQAALRKETA
                     RRRSAEGSVAVLADPVFESDDGRLLKASGGEGEVKTVPAALASSQVDAPLSSGRSFSR
                     LPHSRDEAEAIAAAASSGRVLKALGFDASRAAALGPELGRHRFVHFATHGVVDSERPE
                     LSRLVFSLFDERGRPRDGSLLLGDIYNMDLPVEMVVLSACETGLGKDIKGEGLIGLTR
                     GFMHAGASSVVASLWTIDDGATAELMKIFYERVLSGRVSRAGALREAQVQMWGQKRWR
                     APYFWAAFVMHGDYGSPSAAAPPSGRSLAFVAAAALAAAALGGILAARRLRARRRAAA
                     VS"
     gene            complement(4367..4765)
                     /locus_tag="VD968_19055"
     CDS             complement(4367..4765)
                     /locus_tag="VD968_19055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16545.1"
                     /translation="MEDLDDIMGKIGDTSGKIGDTSGKIGDTSGKIGDTSGRTMGELE
                     REISRGRLSERVGFLESRVGRLEADIIKIAVMLDARLRALEGRGRNTEVEDAVAGLVT
                     KKLQPLDEQVQRLERAVKALQAKPPGPGPA"
     gene            complement(4820..5470)
                     /locus_tag="VD968_19060"
     CDS             complement(4820..5470)
                     /locus_tag="VD968_19060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16546.1"
                     /translation="MARSDHVPTDALNKVAGEVADLIGRGLAKGLRPSGAPEAFESLT
                     GGAGGQPLNIGDTLSVWRLDAAALKRVRESAAEGDLSRWAVPSELLFHVILLNKEPVA
                     FARSRTRLESLDEKALCQLNESPLAGLVSDAVERVNRNEWRDPVAAAPDAVARLLEVP
                     SYQFRGLWVFSEAREESRVLVIKAPARSRKLRWGGLLTTEQFFEGLRERRPLGGIS"
     gene            complement(5477..6163)
                     /locus_tag="VD968_19065"
     CDS             complement(5477..6163)
                     /locus_tag="VD968_19065"
                     /inference="COORDINATES: protein motif:HMM:NF023802.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="papain-like cysteine protease family protein"
                     /protein_id="HYE16547.1"
                     /translation="MPLQNTVLIPISVEPPPPPPGAEAAHEDFAFEEARPERELPIPR
                     VAQREDAWCYAACSEMIINYSHGQQQVVDQCNVASFVKAPPGTAGCCGAGAPAVCTDR
                     GCKLQDFPRIFDRFGLEFEPNIDTGTGDPDDLILGRITIGKMREELEADLLDPDDVAR
                     PVLVIVDWDDEDGSHALVVAGIDGQDIFIIDSLEDDEYGGWNDFDYLDSGFHEGEWVK
                     TFPGLKRKGV"
     gene            complement(6277..>6701)
                     /gene="dcd"
                     /locus_tag="VD968_19070"
     CDS             complement(6277..>6701)
                     /gene="dcd"
                     /locus_tag="VD968_19070"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010543264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009394 - 2'-deoxyribonucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HYE16548.1"
                     /translation="SSQSGLRLSYAERAVADGEGEHGAALPCPPLQEPLGGLRALART
                     VEYFRIPRNVLTICLGKSTYARCGIIVNVTPFEPEWEGHVTLEFSNTTPLPAKIYANE
                     GVAQVIFFEAGPDDVCETSYKDRGGKYQKQQGVTLPKL"
BASE COUNT          946 a         2339 c         2312 g         1104 t
ORIGIN      
        1 tcctccatca gctcgtcctc gccggccaga agctcctcga agagccggcc gtcggtcagc
       61 agcctctcct cgaagagtct ctgaccgtcc ggccccatcg ccccgagcag gtactgcctg
      121 actgactcgc gttcgtcttt agattcgctc atcgaacggt aaatacggcc ccggagggcg
      181 tccctgcctg tgtatgacag gaagcgcgat tagatttcat tccttatttc ggcctccatg
      241 caggcgcgca cgcactcgta gagtgtggcc cgtatgcggc aggcgcgtat gcgcagggcg
      301 tttaacgcga cccccatgcc gctcgccaac tccctgcggc ggtcaatctt ctcgcgcctc
      361 tcggccctgt agtactcgag tatcagctcg cggttgcggg gcgtgagctt cgccatgcac
      421 ctgtcgaggc acgcgtagcg ctgctccttc tcgggcgtgg gcgcggcctc gggcggcacg
      481 cgcgcctcag acttcttcct ctccctgagc gactccagga aaatcttgtt ggcgacggcg
      541 tagaagtaga gcgcggggtc gccgtcgtaa tcgcccgcga ccgcgggaac cttcctcgtc
      601 acgcggtcga gcgtgaggtc tgcgagccgc tcggcttcgg ggcagccgcg ggcgttaaag
      661 attttgatga gacggcggcg aatctcctcg tacttctcgc cggctcgttc gcggtcgggg
      721 tctagccagg cgagcagcgc gtcgaaggac tcgggcgtta tcgtcggcgt ctttgacatc
      781 gcgtctcgtg cttataaggg ctcttcgtcg gggcgggagt ttttaggaga cggccgccgc
      841 gcgcctcctc gcgcgcaggc ggcgggcggc taatataccg ccgagcgcgg cggctgcgag
      901 cgcggcggcc gccacgaaag cgagcgagcg gcccgagggc ggggcggctg cggacggcga
      961 gccgtagtcg ccgtgcatca cgaaggcggc ccagaagtac ggcgcgcgcc agcgcttctg
     1021 cccccacatc tgaacctgcg cctcgcgcag cgcgcccgcg cgcgacaccc ggcccgagag
     1081 cacgcgttcg tagaagattt tcataagctc ggcggtcgcg ccgtcgtcaa tcgtccatag
     1141 gctcgccacc acgctcgaag cgcctgcgtg catgaagccg cgcgtcaggc cgatgagccc
     1201 ctcgcccttg atgtccttgc cgagccccgt ctcgcacgcg ctcagcacga ccatctcgac
     1261 gggcaagtcc atgttgtaaa tgtcgccgag caggagcgag ccgtcccgcg ggcggccgcg
     1321 ctcgtcgaag agcgagaaga ccaggcgcga aagctccggc cgctcgctgt ccacgacgcc
     1381 gtgcgtggcg aagtggacga agcggtggcg gccgagctcc ggccccagcg cggctgcgcg
     1441 gctcgcgtcg aagccgagcg ccttaagcac gcggcccgag gaggccgccg ccgcgatggc
     1501 ctctgcctcg tcgcgcgagt gagggaggcg cgagaacgag cggcccgacg acaacggcgc
     1561 gtcaacctgt gatgaggcga gcgccgccgg gacggttttg acttccccct cgccgcccga
     1621 agccttaagc agccggccgt cgtcgctctc gaacacgggg tctgcgagca cggccacaga
     1681 cccttcggcc gaccgcctgc gcgcagtctc cttgcgcagc gccgcctgta tcgaggccga
     1741 tggcaggttg actatctcgt gcgtgacgac cagcgggact gtgtcgccgt tgtcagcgat
     1801 tgcggcggcg gcctgcgccg gccgcggcgc cccgtgcggc aagggcagcg ccgcgaacgg
     1861 gacgtattgg agcgcgccgt cggccacgac gagcagccgc ttcgccttca gctcccccgc
     1921 gacggggccg agtatcagct cgctcagggc cgcggcctgc cgccagtact cggcgtcggc
     1981 agccgcgacg cgcgcctcga aagccgccgc gctctcgccc tccgggcgcc ggtgccgggc
     2041 cgtgagcagc tcgtaggccg agcgcacggc tcgctctatc tcggcgcggg cgggcagctc
     2101 gcgccacgtc atcccgtcct tcgtcacggc ccagaggtag ctggcggaat cgcccagcga
     2161 gaattccaga agcgccgtct cgccgtcggc gagcacctcc cgctgaatct cttcgagccc
     2221 cagcgactgc gggcggacga gcgccgcgta ggccgggctc tcctcgcgca tgcgcgactc
     2281 gacctcctcc agttcggacg cgagcgactg cgcctccgcc gagagcgcgg ccgcctgctc
     2341 gtcgtcgccg gcgctcaggc gcgcgcgccg ctcctgaacc ctttcgagcg cgaggttgag
     2401 ggcgtgcgcc ttgtctagga gcgcgggagg cgcgccgcgg cgtatgtcgt cgcggaagtc
     2461 cgtgagcgtg tcgaacaagc cccgcgcgcg cgcccgctcg ctcgcttgga gggcgcgcgc
     2521 cgcgtggccg cgcgcggggt cgcggcggtc gaggcgcatc agcaggtcaa tgtaaagctc
     2581 gtagtggcgg tgcacggacg cgctgtagga ggcgccgagg tcgcggctca agacctgcgt
     2641 gcgcagcgac tcgaccagcg agagcgaggc ttccatctgc gccagcgcgc cttctaggtc
     2701 gcccgcgtcg cgcagggcgc ccgccaggcg gaagagcgcc gagacctcgc ccgcgcggtc
     2761 ggaggtcgcg cggctgagcg cgagggcgag gcggtagtgt tcgagcgcct tctcccggcg
     2821 gcccgccgac tcgtgcgcgc cgccgatgtt ggcgagcacg ccggcctcgc ccatcctgtc
     2881 gcgaacggat ctgtagaggg cgagcgcccg gccgaaattt tcgagcgcga ggcgcgtctc
     2941 gcccgtctcg gcgtaaaccg tgccgatgag gttaagggcg ttggccctcg tctgcgggta
     3001 gcgcaccgag cggcgcagcg tctcgcggta gcactcgagc gcgcgctcgt gctcgccgag
     3061 cccttggtaa gagttgccca cgcgcgtgag cgtgaaggtc tcgtactcac ggttcccgag
     3121 cgcggcgaag aggcggcgcg cgcggtcgta gcattcgagg gcgcgcgcgt actcgccgag
     3181 gctgcgatag acgtaaccga ggccgttcga ggctacggcc tcgccgttgc gctcgcccat
     3241 ctcgcggaag aggcgggcgg cgcggttgtg gctagcgagc gccgcttgcc tcttgccgag
     3301 gtacgcctcg acgcttcccg cggccgtgag cgcgagcgcc tcgccccgcc tgtagttcga
     3361 cgcgcgcgag agttgcaggg cctggtcgta atgccccagc gccccgtcaa cgtcgcgcag
     3421 gtcgtagcgc acgtagccga ggtcgaggag cgcctgaacc ttgccgcgcc cgtcgccttt
     3481 gggccagagc gcgagcgcgc gcgtgagcga ctcttccgcc ccgcgcatgt cgccctcgaa
     3541 gtagagggcg gcgccggtgt tcgccagcga gcgggcctcg ccgcgcgtgt cgccggcggc
     3601 gcggctcagg tcgagggcgc ggcggcagta cgcggcggcc tcgcgcccgc ggccgagata
     3661 gacgaggaca ttggcgacgc cgttaagggc ctcgacctcg gcggcgcggt cgcgggccgc
     3721 ccgcgcgggg ccgagcgcgg cgcggtaaga gtcgagtgag cgcgcgtact cgctcaaggt
     3781 gaagtaaacc tcgcccgcga ggttcgcggc tgcggcctct cccccggggt cgcccgcggc
     3841 gcgcgaggcc gcgcgcgcct cctcgaactt cgccgccgcc ccgcgcagag acacttccgt
     3901 ccaaccttcg aacagttccc tcccctctgc gactgcgcgc tcggccgcga acgcgtctcc
     3961 gcccgccgcc gcgttcgcgc gggcggcggc caggcaggcg agttgcagca gcacggcggc
     4021 cgcgagcgcc gcggcggcgc gtgggcgcga gccgcggccc cgcgcgcgcg ggcgctcatc
     4081 actcttgcag ctcataaatc acgctccggg tggagaggcg attcaagctt tatcttctga
     4141 cgaagaagaa cgaaaagcct tccgcaggag actgcgcggc gaaccgaaaa aggcgtgaag
     4201 ccctgcgccg cggcgccggg ctttcgttgg cggatacatc tagcacaaaa ggtgttggat
     4261 tcaaagccga gccccggcgg gcgcgaagcg gcccggccct gcgctcttac gagtcgaggc
     4321 ggggccgggc cgtctaattt tcaggggcct tctgaagtcg cgggcgtcag gcgggcccgg
     4381 ggcccggggg tttcgcctgt agagctttga cggccctttc caaacgctgc acctgttcgt
     4441 cgagcggctg caacttcttc gtgacgaggc ccgccacggc gtcctcgacc tcggtgttcc
     4501 ggcccctgcc ctcgagcgcg cgcagcctcg cgtcgagcat gacggcgatt tttatgatgt
     4561 cggcttcgag ccgcccgacg cggctctcga ggaagccgac cctctcggag agcctgcccc
     4621 tggagatttc ccgctcaagc tctcccatcg tcctccccga cgtgtcgcct atcttccccg
     4681 aggtgtcgcc tatcttgccg gaggtgtccc cgatcttgcc cgacgtgtcg cctatcttcc
     4741 ccatgatgtc gtcaaggtct tccataactt tgctcctttt cgctctgacg ctttggatta
     4801 gtccggccgg ctcgcgacgc taggatatgc ccccgagcgg ccgcctctcg cgcaggccct
     4861 cgaaaaattg ttctgtggtc aggagcccgc cccacctgag cttccggctg cgggccgggg
     4921 cttttatgac cagcacgcgg ctctcttccc tggcctcgct gaagacccaa aggcccctga
     4981 actggtagga ggggacttcc agcaggcggg ccaccgcgtc cggcgccgcc gccacggggt
     5041 ctcgccactc gttacggttg acccgctcga cggcgtcgct gacgagcccg gccagcggcg
     5101 actcgtttaa ctggcacagc gccttttcgt ccaggctttc gagccgcgtg cgggagcgcg
     5161 cgaaggcaac cggctcctta ttcagcagga tgacgtggaa gagcagctcc gaaggcacgg
     5221 cccagcggga caggtcgccc tccgccgccg actccctcac ccttttaagg gcggcggcgt
     5281 cgaggcgcca cacggagagg gtgtctccta tgttgagcgg ctgccccccc gccccgccgg
     5341 tgagagattc gaacgcttcg ggcgcgcccg aggggcgcag ccccttcgca agcccgcggc
     5401 cgattaggtc ggccacctca cccgcgacct tgtttagagc gtccgtggga acgtgatccg
     5461 agcgggccat aggcgcctac acccccttcc tcttcaagcc ggggaaggtc ttgacccact
     5521 ccccctcgtg gaagccgctg tcgaggtagt cgaagtcgtt ccagcccccg tactcgtcat
     5581 cctccagcga gtcaataatg aatatgtcct gcccgtctat cccggccacg accagtgcgt
     5641 gggagccgtc ctcgtcgtcc cagtccacga tgacgaggac ggggcgggcg acatcgtctg
     5701 ggtcgagcag gtctgcctcg agctcctccc tcatcttccc gatggtgatg cgccccagga
     5761 tgaggtcgtc cgggtctccg gttcccgtgt ctatgttggg ctcgaactcc agcccgaacc
     5821 tgtcgaatat cctcgggaag tcctggagct tacagccgcg gtcggtgcac acggccgggg
     5881 cgcccgcgcc gcagcagccc gccgtgccgg gcggggcctt gacgaagctc gccacgttgc
     5941 actggtcaac cacctgctgc tggccgtggc tgtagttgat gatcatctcg gagcaggcgg
     6001 cgtagcacca tgcgtcctcg cgctgcgcga cgcgagggat gggcagctcc ctttcgggcc
     6061 gggcctcctc gaaggcgaag tcttcgtggg cggcctccgc gccgggcggg ggcggcgggg
     6121 gctcgacgct tatggggatg aggacggtgt tttgaagggg catgtgcggt atcactcctc
     6181 agaaggcagc ggccgcgcgt aggccgtctc ataagattat gagcgccggc ccgcttacat
     6241 ttcatcgcgc cgccctatcc gcgcgccggc cgcgcgtcag agcttgggca gtgtgacgcc
     6301 ctgctgcttc tggtacttgc cgccgcggtc tttgtatgag gtctcgcaca cgtcgtcggg
     6361 gccggcctcg aagaagatga cctgggcgac gccctcgttg gcgtaaatct ttgcgggcag
     6421 cggcgtggtg ttcgagaact ccagcgtgac gtggccctcc cactcgggct cgaagggcgt
     6481 gacgttgacg attatgccgc agcgcgcgta ggtgctcttg cccaggcaga tggtcagcac
     6541 gttgcgcggt attcggaagt actcgacggt gcgggcgagc gcacgcagcc caccgagcgg
     6601 ctcctgcagg ggagggcagg gcagggcggc gccgtgctct ccttcaccgt cggcgacggc
     6661 acgctccgca taagacaggc ggaggccgct ttgagatgag c
//
LOCUS       DASPKR010000729        10135 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1540024, whole genome shotgun sequence.
ACCESSION   DASPKR010000729 DASPKR010000000
VERSION     DASPKR010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10135)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10135
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1540024"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..784)
                     /locus_tag="VD968_19075"
     CDS             complement(<1..784)
                     /locus_tag="VD968_19075"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HYE16549.1"
                     /translation="MKSLLQVGCQGWNYEDWVTPPGSGRAVFYPRGTRAPDMLDIYAR
                     AFDTVEVDSTFYATPSEPAVDGWAKRTPDSFTFALKLPQAITHTHALRGQAAREGLEE
                     FCARARRLGPKLAAVLVQLPPQFEATRENAAALAEFLTWLPTDLRFAFELRDPFWFEQ
                     EWLGPLAARPNVTLALVEGRWATRERVWRAAAAGALKTFCERARRLGPKLAAVLVQFP
                     PQFEATRENAAALADFLPLLPADIRFAVELRDPFWFEEELLEP"
     gene            complement(817..1422)
                     /locus_tag="VD968_19080"
     CDS             complement(817..1422)
                     /locus_tag="VD968_19080"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYE16550.1"
                     /translation="MTDRPPVYDRLAAHYDRWMRPLERMGLRALRARVLGELPEGALL
                     LEVGAGTGANFEHYPRAAVGAAVEPSGEMLARAARRAERPRGVQLIQSRAEQLPFADA
                     SFDAAFATLVFCSVASPAAGFSELRRVVRPGGVVALLEHVRPRWPLGYAFDALSFLTE
                     RLFEDHFNRRTALEAERAGLSVVRVEERLLGALQLIVCRAD"
     gene            1872..5195
                     /locus_tag="VD968_19085"
     CDS             1872..5195
                     /locus_tag="VD968_19085"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE16551.1"
                     /translation="MARPLRLTLAALALMLCAWLPAAAQTTGSILGTVQDEKGAAVPN
                     ATVAARNVSTGVARTTQADEEGRYRFTNLPVGDYEITVEARGFAKYVQTGIQLLLNQN
                     AVVDATLRAAGVEAVVTVTENAALLNTTNAEVSTRFDSRRLSELPISTNRSVYNVALS
                     APGISQVVTGQSSFASQIGFSANGGRVRSNNFMIDGQDNNDFGVAGATVGLNNPDLIQ
                     EVRLVTNQFTAEFGRNGSAVFNAITKSGGNEFHGSGFWFHNDNALNACSNLNKAAGFC
                     NPNSTVESLRKAPFRIENQLGGTIGGPLHLPRFGEGPGKAYISGRDRTFFFFSLQRWW
                     DRQLGSGFTINGVPNEAGRQALQAGAGGRPHVAALLTHLPAANGPCTGSATACAPKTF
                     TAGGNTFTVPVGSLTGSTSAQLNNWQQSIRIDHNISQKHSLFGRYIFNDNDQTGSDQA
                     TPPGLSTNSLVRSQAVNLSLNSLLTSTMVNELRGAYQRQGQLFNAADPRSEEIPSIEI
                     SALGLTGFNAASNRTAIGLAVNLPQFAFRQTYQLQDNLSVTHGNHALKFGIDIRRNQL
                     KQFFLPTIRGRLVYSTLQRFIDDIADSATVNKPLAGGQEIFYYDWHDFFGYGQTEWKV
                     RPNFTLTLGLRYESPGQPIADLVEVNDAIVAAAGGDERFRFGPVPKRDNNNFQPRIGF
                     NWNPRVEGGPFGWLAGGDRLVIRGGYAVTHDYAFTNIASNIASAFPFVAAAELAVSPQ
                     PGGPGVPNAFAVLPTIQGATGLNPNRLTRTIVGDDFRSPYYQQFSLEAQREMTRDVVL
                     RVGYVGTKGTALFQTLDGNPRRLGTVTCAETDADTCRVNQIAGVFRLRGNAAASIYHS
                     MQVSLEKRLSRGFSAGAHYTWSSFIDTASEIFNPSGAEVAVSQDSFNRSTERARSSFD
                     RPHRFTGNFVYELPWLQDQRGFAGHVLGGWQMNAFFTLQDGSPFTVLQGTDPAGALSG
                     ISGLVGNAIRPNLVTDLPLGSMSVEAIRVAAAGLTCAHGSGAQCLFRPVTAAERVGNA
                     GRNILRTDGINRLDFGILKNTQIGESQRLQVRADFFNFTNTRDFGVPEGRINNSNFLN
                     QWGTNGGNRRVIVGLRYVF"
     gene            5335..5967
                     /locus_tag="VD968_19090"
     CDS             5335..5967
                     /locus_tag="VD968_19090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16552.1"
                     /translation="MKALGVLLSLAFSCAAALAQAQPQQAQAAAAPPDVVVIKFSWDK
                     ERLNWEGDPFGGPNENFDQMRVRMRNEKRILDAKAGGNQVELNKVEREARADSANIER
                     IRAKAPARYGFTYKVTVQNNGARAVKAVDWDYVFTDAATGAELGRHQFTSEEKIGPGK
                     KKEFSFFISSPPTQTVSAQSLNKKERDGLAEQVVVVRVLYDDGTAWQPSR"
     regulatory      6154..6312
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            6645..9125
                     /locus_tag="VD968_19095"
     CDS             6645..9125
                     /locus_tag="VD968_19095"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE16553.1"
                     /translation="MWREAFIQKLFLAFALAAAAAFAPALAQQAQPPGGTISGRVTDA
                     RGAVVAGARVKVYARGRAQEFRLSTATDASGAYRFDGLASGAYIVEAEAEGFAPSAAR
                     EVSLAVRGSETLDVQLEVAGVSTEVVVTASDAPQTVDEVSKAVTVVGRRELEERDEAT
                     LADALRTVPGLGVQQLGGPGSFTSVRARGLRSQDTALLIDGVRFRDPTAVRGDASGFL
                     GDFVPTNASRVEVLRGSGSSLYGTNAIGGVVNVVTDEGGGPFRGQLFAEGGGLGFARA
                     RAQLSGSAGEADRLAFSAAVSHLNVARGVDRDDAARITSAQGRAVLRLAPTATLSARI
                     YASDAFAQLNENPFVVGTLPASGIVEARPISEAELRRFESGVALGSLDAASATFVPGA
                     NDPDNSRAGRFFSGAFTFAQRPVEGFGYALTYHALVTRNRFSEGPAGAGDPLDFFNFF
                     EPLGTTRNDFDGALHTVNARTDFRLGRHNLVTAGYEFEREGYRNNSFGVTAAGNSSVE
                     ITEHSHAFFVQDQLRFFGERLQLSAAFRAQLFSLDAPRFTPTAGAPYAGVAFASPPTA
                     YTGDGSAAYLFRSTGTKLRAHAGNGYRKPSVFERFGTFFSSFTGTFGALGDPRLAPDR
                     SVAFDAGLDQSLAGGRVRLSATYFYTRLQEVVDFSNFIADDPFGRAFGGYVNTGGGLA
                     RGAELSASAAATRTTDLFASYTYTNSDQRVAQVEGLLRAFGVPDHQLTLVVTQRFGRR
                     VALNFDFVATGDYLAPIFDNSTFRNRAYRFRGLRRGDLTAAYTLPLAGSRSLRLFGKV
                     ENLFDREHFESGFRTPGASARAGAALNF"
     gene            9170..10108
                     /locus_tag="VD968_19100"
     CDS             9170..10108
                     /locus_tag="VD968_19100"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYE16554.1"
                     /translation="MLRRTLGKILTLRALAAVCVLALLGASCSGGIGGCAGGVPSPFA
                     SKDGRPARIVSLTPSVTEILDGVGAFDRVVAVSDYCTYPPGVTRLPRVGGWTNPNLER
                     IASLRPDLVVYWGSQAQFVDDKLKALGIKTLSVPSRSLADAFAAIEQIGRATGNEEQA
                     RRLVEQTRAEIEEVRGRTSGLPRRSVLCVVDRMPGTLRDIYTAAEGSFLAELIEAAGG
                     RPVSPPASTGWGKLQKEAVVSIDPDVIIDLMMQKPEGQLAEDTLAVWGEMPALRAVRE
                     GRVHPVRDETVLHPSQFVATTARKFAEIIHPEAFGK"
BASE COUNT         1671 a         3670 c         3285 g         1509 t
ORIGIN      
        1 acggttcgag cagctcctcc tcaaaccaga aggggtcgcg cagctcgacg gcgaagcgga
       61 tgtcggcggg cagtagtggc agaaagtctg cgagcgcggc ggcgttctcg cgcgtcgcct
      121 cgaactgcgg cgggaactgg acgagtacgg ccgcgagctt cggcccgagc cggcgcgcgc
      181 gctcgcagaa ggtcttgagc gcgcccgcgg ccgccgcgcg ccagacgcgc tcgcgcgtcg
      241 cccagcgccc ctcaacgagc gcgagcgtga cgttcggccg cgccgcgagc ggcccgagcc
      301 actcctgctc gaaccagaac gggtcgcgca gctcgaaggc gaagcgcagg tccgtcggca
      361 gccacgtcag gaactcggcg agcgccgcgg cgttctcgcg cgtcgcctcg aactgcggcg
      421 gcaactgcac gagcacggcc gcgagcttcg ggccgagccg acgagcgcgc gcgcagaact
      481 cctccagccc ttcgcgcgcg gcctggccgc gcagtgcgtg cgtgtgcgtt atcgcctgcg
      541 gcagcttgag cgcgaaggtg aagctgtcgg gcgtgcgctt cgcccagccg tcaacggccg
      601 gctccgaagg ggtcgcgtag aaggtcgagt caacctccac ggtgtcgaag gcgcgcgcgt
      661 atatgtcgag catgtcgggg gcgcgagtgc cgcgcgggta gaagactgcg cggccgcttc
      721 cgggcggcgt cacccagtcc tcgtagttcc agccctgaca cccgacctgc aagagactct
      781 tcaagacggc gttgccccca cccctttcgt caacctctaa tccgcgcggc agacgattag
      841 ctgtagcgcg ccgagcagcc gctcctccac gcgcacgacg ctgaggcccg cgcgctcggc
      901 ctcaagggcc gtgcggcggt tgaagtggtc ttcgaagagc cgctcggtca ggaagctcag
      961 cgcgtcgaag gcgtagccga gcggccagcg cggccgcacg tgctcaagca gcgccaccac
     1021 cccgccgggc cgcacgaccc gtcgaagctc cgagaagccg gccgcgggcg acgcgaccga
     1081 gcagaagacg agcgttgcga aggccgcgtc gaacgacgcg tccgcgaacg gcagttgctc
     1141 ggcgcgcgac tggatgagct gcacgcctcg cggccgctcg gccctccggg cggcgcgcgc
     1201 gagcatctcg ccgctcggct cgacggccgc gcccacggcc gcgcgcgggt agtgctcgaa
     1261 gttcgcgccc gtcccggcgc cgacttcgag caggagcgcg ccctcgggca gttcgcccag
     1321 cacgcgcgcg cggagggcgc gcaggcccat gcgctccagc ggccgcatcc agcggtcgta
     1381 gtgcgcggcc agtcggtcat agacgggcgg cctgtcggtc ataaactgct cgcgcggaca
     1441 gcctagagcg ccgggggcgc gcgtgtaaag cgcgggggct gcgggggcgg cgtatgtaaa
     1501 aattcggtaa aaactatccg aaaaaatgga tagcgggcgc agcggcgaaa gttatttcgt
     1561 gaaataactc aagtaatcct gcgccccgcg cgcgggcata atgattgcat cgccgaattc
     1621 gcaacagctc gtcggccccg ggcgcacatc gcgcgccccg gcccggaagc ccaaaccgtc
     1681 gggcgcggct gtcctttcat caaggctttc tcattcgttt ttactgaaaa ccgaactcga
     1741 cctcgcggca gtccagaagg cgctcgcctt ccgcgcattt cattcttcgg ccggtctcat
     1801 tcgttcacag gcagctaccc ccgtgtggga gcggatgatt ctcaccttag ctacttcgga
     1861 gggaaaaaac gatggcaaga ccactgagac tgaccctggc ggcactggcg ctcatgctgt
     1921 gcgcgtggct gccggccgcc gcgcagacga ccggcagcat actcggcacc gtgcaagacg
     1981 agaagggcgc ggccgtccct aacgcgaccg tcgcggcgcg caacgtctcg acgggagtgg
     2041 cgcgcactac acaggcggac gaggaggggc gctaccgctt caccaacctc cccgtcggcg
     2101 actacgagat aacggtcgag gccaggggct tcgccaaata cgtccagacc ggcatacagc
     2161 tcctcctgaa ccagaacgcc gtggtggacg cgaccctgcg cgccgcgggc gtcgaggccg
     2221 tcgtcaccgt gacggagaac gcggcgctac tgaacacgac gaacgccgag gtctccacgc
     2281 gcttcgactc gcggcgcctc tcggagctcc cgatctcgac gaaccgcagc gtctacaacg
     2341 tcgcgctctc ggcccccggc ataagccaag tcgtgacggg ccagtcctcc ttcgccagcc
     2401 agataggctt ctccgccaac ggcgggcgcg tccgctccaa caacttcatg atagacgggc
     2461 aggacaataa cgacttcggc gtcgcgggcg ccacggtcgg cctgaacaac cccgacctca
     2521 tacaggaagt ccggctagtc accaaccagt tcacggctga gttcggccgc aacggctcgg
     2581 ccgtcttcaa cgccatcacc aagtccgggg gcaacgagtt ccacggctcc ggcttctggt
     2641 tccacaacga caacgctctg aacgcttgca gcaacctcaa caaggccgcg ggcttctgca
     2701 accccaactc caccgtcgag tcgctgcgca aggcgccgtt ccgcattgag aaccagctcg
     2761 gcggcaccat cggcggcccg ctccacctgc cgcgcttcgg cgaggggccg ggcaaggctt
     2821 acatctcggg ccgcgacaga accttcttct tcttctcgct acagcgctgg tgggatcgcc
     2881 agctaggctc cggctttacg atcaacggcg tcccgaacga ggccggccgg caggcgctac
     2941 aggccggggc gggggggcgc ccgcacgtgg ccgcgctgct cacccacctg cccgcggcca
     3001 acggcccctg cacgggctcg gccacggcct gcgccccgaa gacgttcacg gccggcggca
     3061 acacgttcac ggtgccggtc ggctcgctga cgggctcgac ctccgcgcag ctaaacaact
     3121 ggcagcagtc catacgcatt gaccacaaca tctcgcagaa gcactcgctc ttcggccgct
     3181 acatcttcaa cgacaacgac cagacgggca gcgaccaggc gacgccgccg ggcctgagca
     3241 ccaactcgct cgtgcgcagc caggccgtca acctctcgct caacagcctg ctcacttcga
     3301 cgatggtcaa cgagctgcgc ggcgcctacc agcggcaggg ccagctcttc aacgccgccg
     3361 acccgcgctc ggaggagatt ccctccatcg agataagcgc gctgggcctg acgggcttca
     3421 acgcggcgag caaccgcacg gccatcgggc tggccgtcaa cctgccgcag ttcgccttcc
     3481 ggcagaccta ccagctacag gacaacctct cggtaacgca cggcaaccac gcgctgaagt
     3541 tcggcattga catacgccgc aaccagctca agcagttctt cctcccgacc atccgcggcc
     3601 ggctcgtcta cagcacgctc cagcgcttca tagacgacat tgccgactcg gcgaccgtca
     3661 acaagccgct cgccggcggg caggagattt tctactacga ctggcacgac ttcttcggct
     3721 acggccagac cgagtggaag gtgcggccga acttcacgct gacgctcggc ctgcgctacg
     3781 agagccccgg ccagcccatc gcagacctcg tcgaggtcaa cgacgcaatc gtcgccgcgg
     3841 ccgggggcga cgagcgcttc cgcttcggcc cagtgcctaa gcgcgacaac aacaacttcc
     3901 agccgcgtat cggcttcaac tggaacccgc gcgtcgaggg cggccccttc ggctggctcg
     3961 ccgggggcga ccgcttggtc atacgcggcg gctacgccgt cacgcacgac tacgccttca
     4021 ccaacatcgc ctcgaacatc gcgagcgcct tcccgttcgt cgcggccgca gaactggcgg
     4081 tctcgccgca accgggcggc cccggcgtgc cgaacgcatt cgccgtactg ccgacgattc
     4141 agggcgcgac gggcctgaac ccgaaccgcc tgacgcgcac catcgtcggc gacgacttcc
     4201 gctcgcccta ttatcagcag ttcagcttag aggcgcagag ggagatgacg cgcgacgtgg
     4261 tgctgcgcgt cggctacgtc ggcacgaagg ggacggcgct gttccagacg ctcgacggca
     4321 acccgcgccg cctgggcact gtcacctgcg ccgagacgga tgccgacacc tgccgcgtca
     4381 accagatagc gggcgtcttc cgcctgaggg ggaacgcggc ggcctccatc taccactcga
     4441 tgcaggtcag ccttgagaag cgcctgtcgc gcggcttcag cgccggcgcg cactacacgt
     4501 ggagcagctt cattgacacg gcctccgaga tattcaaccc ctcgggcgcc gaggtcgccg
     4561 tctcgcagga ctccttcaac cgcagcaccg agcgcgctcg ctcctcgttc gaccgcccgc
     4621 accgcttcac cggcaacttc gtctacgagc tgccctggct gcaagaccag cgcggcttcg
     4681 ccggccacgt cctgggcggc tggcagatga acgccttctt caccttgcag gacggctcgc
     4741 cgttcacagt tctgcaaggc acagacccgg ccggcgccct ctcgggcatc tcgggcctgg
     4801 tgggcaacgc catacggcct aacctcgtca cagaccttcc gctcggctcg atgtcggtcg
     4861 aggcgataag ggtcgcggcc gcggggctca cctgcgcgca cggctccggc gcgcagtgcc
     4921 tcttccggcc cgtcacggcc gccgagcgcg tcggcaacgc cggccgcaac atactgcgca
     4981 ccgacggcat caaccgcctc gacttcggca tcctgaagaa cacgcagatc ggagagtcgc
     5041 agcgcctaca ggtgcgggcc gacttcttca acttcacaaa cacgcgcgac ttcggcgtcc
     5101 ccgaaggccg catcaacaac tcgaacttcc tgaaccagtg ggggacgaac ggcggcaacc
     5161 gccgcgtcat cgtcggcctc cgctacgtgt tctaaacccg aaaacccgca gcgcgcgccg
     5221 agggcggccg ccgagacttt tccggtctcg gcggccgccc gaggtttttc cccgcgcccg
     5281 aaagtagtaa catcggggcc acagaccgta accgcgccgt aggaggggga agcgatgaaa
     5341 gcccttggag tcttactttc cctcgcgttc tcttgcgccg ccgcgctcgc gcaagcccag
     5401 ccgcagcagg cgcaggcggc ggcagcgccg cccgacgtcg tcgtcatcaa gttcagttgg
     5461 gacaaggagc ggctcaactg ggagggcgac cccttcggcg gccccaacga gaacttcgac
     5521 cagatgcgcg tccgcatgcg caacgagaag cgcatactcg acgcgaaggc gggcggcaac
     5581 caagtcgagc ttaacaaggt cgagcgcgag gcccgcgccg actccgccaa catcgagcgc
     5641 atcagggcca aggcaccggc gcgctacggc ttcacgtaca aggtcaccgt gcagaacaac
     5701 ggcgcgcgcg ccgtcaaggc cgttgactgg gactacgtct tcacagacgc cgcgacgggc
     5761 gccgagctcg gtcgccacca gttcacgagc gaggagaaga taggccccgg caagaagaag
     5821 gagttctcct tcttcatctc gtcgcccccc acgcagaccg tcagcgcgca gtcgctcaac
     5881 aagaaggagc gagacgggct cgcagagcag gtcgtcgtcg tccgcgtcct ctacgacgac
     5941 ggcaccgcct ggcagccttc gcggtgatcg ggcgccttga cgctcgcccc gcgcggtgtt
     6001 aggttgtcac acctcggcgg ccggcccctc agggcttcgg gccgacagct ctttggaatt
     6061 ttcgttttat cgctgatttc aacccgcgcc gccccggatg gggcgcgcga agggttgacc
     6121 gtcgcaggtc agaaggcccg ccaaacgggc cgcaagggaa gtcgggtgaa aagcccgcgc
     6181 ggttcccgcc actgtgtacc ggcgattgct ccgcccgcgt gctccctctt cgcagagagg
     6241 gaggccactc gtccccgtgg ggacggggaa ggccccgcgg gcggcgcgcc cgagccggaa
     6301 gtcaggaaac cttgcctgca aaagaagcgg tcagcaataa gcagtcggcg gtcagctaaa
     6361 ggacaaaaag ctgattgctg acggctgaaa agctggcggc tatttctgac ggtggcgacc
     6421 gcttacgctc cgggaaaggg cgagtggcgt cgggcaagaa tcggaggctc acgcggtcgg
     6481 ctcgctcgcg gcgcggccct ccaaaatttt catccggcac gccctcggtc ttccgcgcgg
     6541 aagaccgagg gcgttttcgt tttcgcgccg ggagaagaag cccctccgcc cgcccgtccc
     6601 cgctgccgtt cagtcggcgc gccgccgggg aagggggctt gacgatgtgg agagaggctt
     6661 tcattcaaaa actatttctc gccttcgcgc tggccgcggc cgccgctttc gcgcccgcgc
     6721 tggcgcagca ggcgcagccg cccggcggga cgatttcggg gcgcgtgacg gacgcgcgcg
     6781 gcgctgtcgt cgcgggcgcg cgggttaaag tttacgcgcg ggggcgggcg caggagttca
     6841 ggctctcgac ggcgacggac gcctcgggcg cctaccgctt cgacgggctc gcctcgggcg
     6901 cctacatcgt cgaggccgag gccgagggct tcgcgccgag cgccgcgcgc gaagtctcgc
     6961 tcgccgtgcg cggctccgag acgctcgacg tacagctcga agtcgcgggt gtgagcacag
     7021 aggtcgtcgt caccgcatcc gacgccccgc agaccgttga cgaagtctcg aaggccgtca
     7081 cggtcgtcgg ccgccgagag ctcgaagagc gcgacgaggc cacgctcgca gacgcgctgc
     7141 gaacggtgcc ggggctcggc gtgcagcagc tcggcggccc cggctctttc acgtccgtga
     7201 gggcgcgcgg gctgcgcagc caggacacgg cgctactgat tgacggagtg cgcttccgcg
     7261 acccgacggc cgtgcgcggc gacgcctcgg gcttcctcgg cgacttcgtg ccgacgaacg
     7321 cctcgcgcgt cgaagtgctg cgcggctccg gctcctctct ctacggcacg aacgccatcg
     7381 gcggcgtcgt caacgtcgtc acggacgagg gcggcggccc cttccgcggc cagctcttcg
     7441 ccgaaggcgg cggcctcggc ttcgcgcgcg cccgcgcgca actgtccggc tcggctggcg
     7501 aggccgatcg cctcgccttc agcgccgccg tctcgcactt aaacgtcgcg cgcggcgttg
     7561 accgagacga cgcggcgcgc atcacgagcg cgcagggccg cgccgtcctg cgcctcgcgc
     7621 cgaccgcgac gctctccgcc cgcatctacg cctcagacgc cttcgcgcag cttaacgaga
     7681 accccttcgt cgtcggcacg ctccccgcct cgggcatagt tgaggcgcgg ccaatctcag
     7741 aggcggagct gcgccgcttc gagtcgggcg tagcgctcgg gagccttgac gccgcctcgg
     7801 cgaccttcgt cccaggcgcc aacgaccccg acaactcgcg cgcgggccgc ttcttctccg
     7861 gcgctttcac cttcgcgcag cgccccgttg agggcttcgg ctacgcgctc acataccacg
     7921 cgctcgtcac gcgcaaccgc ttcagcgaag gccccgcggg cgcgggcgac ccgctcgact
     7981 tcttcaactt cttcgagccc ctcggcacaa cccgcaacga cttcgacggc gcgctccaca
     8041 ccgtgaacgc gcggactgac ttccggctcg gccggcacaa cctcgtcacc gccggctacg
     8101 agttcgagcg cgagggctac cgcaacaact ctttcggcgt caccgccgcc ggcaactcct
     8161 ctgtcgagat aaccgagcac agccacgcct tcttcgtgca ggatcagcta cgcttcttcg
     8221 gcgagcggct gcaactatcg gccgccttcc gcgcgcaact cttctcgctc gacgcgccgc
     8281 gcttcactcc gacggccggg gcgccctacg ccggggtcgc gttcgcgtcg ccgccgactg
     8341 catacacggg cgacggctcc gccgcctacc tcttccgctc gacgggaacg aagctgcgcg
     8401 cgcacgccgg caacggctac cgcaagccct ccgtcttcga gcgcttcggc accttcttca
     8461 gcagcttcac gggaaccttc ggcgctctgg gcgaccctcg gctcgcgccc gaccgctccg
     8521 tcgccttcga cgccgggctc gaccagtcgc tcgccggcgg ccgcgtgcgc ctatcggcga
     8581 cctacttcta cacgcgcctt caagaggtgg ttgacttctc gaacttcatc gccgacgacc
     8641 cgttcggccg ggccttcggc ggctacgtca acacgggcgg cggcctcgcc cgcggcgccg
     8701 agcttagcgc ctccgcggcc gcgacgcgca cgacagacct gttcgcctcc tacacctaca
     8761 cgaacagcga ccagcgcgtc gcgcaggtcg aggggctact gcgcgccttc ggcgtccccg
     8821 accaccagtt gacgctcgtc gtgacgcagc gcttcggccg ccgcgtcgcg ctcaacttcg
     8881 acttcgtggc gaccggcgac tacctcgcgc ccatcttcga caactcgact ttccgaaacc
     8941 gcgcgtaccg cttccgcggc ttgcggcgcg gcgacctcac ggccgcctac acgttgccgc
     9001 tcgccgggtc gcgctcgctg cgcctcttcg gcaaagtcga gaacctgttc gaccgggagc
     9061 acttcgagag cggcttccgc acgcccggcg cgagcgcgag ggccggcgcg gcgctcaact
     9121 tctaaactcg tgcatcgtta actcattctt tccgagacgg aagacgacga tgttgagaag
     9181 gacgctcggt aaaatcctaa ctctgcgcgc gctggcggcc gtgtgcgtgc tggcgctcct
     9241 cggcgcatcg tgctcgggcg gcattggcgg ctgcgcgggc ggcgtcccct cgccgttcgc
     9301 gtcgaaggac gggaggccgg cgcgcatcgt gtcgctcacg ccgagcgtga cggagattct
     9361 cgacggcgtc ggagccttcg accgcgtcgt ggccgtctcg gactactgca cgtacccgcc
     9421 gggcgttacg cggctgccga gggtgggcgg ctggactaac ccgaacctcg aacggatagc
     9481 gtcgctgcgg cccgacctcg tggtctattg gggctcgcag gcgcagttcg tggacgacaa
     9541 gctcaaggcg ctcggcataa agaccctgag cgtgccgagc cgctcgctcg ccgacgcctt
     9601 cgccgccatc gagcagatag ggcgcgcgac gggcaacgaa gaacaggccc gccgcctcgt
     9661 cgaacagacg cgcgcagaga tagaggaagt gcgcgggcgc acttccggcc tcccgcgccg
     9721 tagcgtgctg tgcgtagttg accggatgcc ggggacgctg cgcgacatat acacggcggc
     9781 cgagggcagc ttcctcgcgg agttgataga ggccgcgggc gggcgccccg tctcgccgcc
     9841 cgcctcgacg ggctggggga agctgcagaa ggaggccgtc gtctcgattg acccggacgt
     9901 gataattgac ctgatgatgc agaagcccga ggggcagctc gccgaagaca cgctcgccgt
     9961 ttggggcgag atgcccgccc tgcgcgccgt gcgcgagggg cgcgtccacc ctgtgcgcga
    10021 cgagacggtg ctgcacccct cgcagttcgt cgctacgacg gcccgcaagt tcgccgagat
    10081 aatccacccg gaggctttcg ggaagtgagg cgaccgcggc ggagcggtca atttt
//
LOCUS       DASPKR010000730         2834 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1278310, whole genome shotgun sequence.
ACCESSION   DASPKR010000730 DASPKR010000000
VERSION     DASPKR010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2834)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2834
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1278310"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1080)
                     /locus_tag="VD968_19105"
     CDS             complement(<1..1080)
                     /locus_tag="VD968_19105"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HYE16555.1"
                     /translation="MSVTKHSPGLSCETLGDEHERLGRMAVELIADYARSLDSAPVCS
                     KATPAELEALFDEPLPREPAAPEEIFGKLRRDLLPHAMNIPSPRYYGLFNPTPLPVAV
                     WADAVASAINQNGAAWRNSPSASIVEARVLRWLCALVGYGGGSFGTLTSGGSEANLLG
                     LKCARDRAAEGSRDRGLPGSASKGSLVVYASEQCHYSFIKSVDILGLGRENLRKIETD
                     ERFHIRTDLLREAIERDLAEGNTPCSVAGAAGATSTGIVDPLDALADIAEEHGLWFHV
                     DAAYGGGLAFSEKHRARLRGIERADSVTFDPHKWMFVPFACGALLVKGGGRVLRDAFD
                     ITPEYLSEDRGGSDVEYDFFRYGQLG"
     gene            1122..1757
                     /locus_tag="VD968_19110"
     CDS             1122..1757
                     /locus_tag="VD968_19110"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF014575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmG family class I SAM-dependent
                     methyltransferase"
                     /protein_id="HYE16556.1"
                     /translation="MGESKLPPAGEFDKALAESAPLYGVEMGERERRKLTEYFELISL
                     WNKRLHLVAPCPPAEFATRHVLESLMAARFLDDDARVVDLGSGGGLPVIPCLVVKPQI
                     SATLVEASEKKAVFLREALWRLDERRASRVIAERFERMEAPEADFITCRAIERFTELL
                     PRVVEWASHVPTLLLFGGESLRARLEELGLCFDSLKAPGSERRFLFVVRRK"
     gene            complement(1782..2750)
                     /locus_tag="VD968_19115"
     CDS             complement(1782..2750)
                     /locus_tag="VD968_19115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16557.1"
                     /translation="MSPRRSTGRKLLTALLPIVLVVVLAAVGATVWLIYGATRPPARA
                     YLITPEGFKQLSDRGLRATEESWPNRDGTQARGWLLRGAEGAPAVVLLHRYGADRSWL
                     LNLGVKINESSNTTVLLPDLRGHGENPPVKTSSFGVLEASDVLAALDYLRSLKTPQGR
                     PLVSERLGLYGVEAGAYASLVAAAEGRAGVRALALDSVPDDPDEVLGSAVNARTGLDN
                     AALRALARLGARLYFAGDYRNEPACNYAERLGDRRVLLLSGEDAGALRFSTESLVRCF
                     PNQQNVEARTDLPLTGVTLASATPEQGEAYDRRVIEFFDRALGNGQ"
BASE COUNT          442 a          927 c         1010 g          455 t
ORIGIN      
        1 ccccaactgg ccgtagcgga agaagtcgta ctcgacgtcc gagccgccgc ggtcttcgct
       61 caggtactcg ggcgtgatgt cgaaggcgtc gcgcagcacg cgcccgccgc ctttaaccag
      121 cagcgcgccg cacgcgaagg ggacgaacat ccacttgtgc gggtcgaagg tgacggagtc
      181 ggcgcgctcg atgccgcgga gtcgcgcgcg gtgcttctcc gagaacgcga gccccccgcc
      241 gtaggccgcg tccacgtgga accagagccc gtgctcttcg gcgatgtcgg cgagcgcgtc
      301 cagagggtca actatgccgg tggaggtcgc gcccgccgca cccgccacgg agcagggcgt
      361 gttgccctcg gccaggtcac gctcgatggc ctcgcgcagg aggtctgtgc gtatgtggaa
      421 gcgctcgtcc gtctcgatct tgcggaggtt ctcgcggccg aggcccagta tgtccacgct
      481 cttgatgaac gagtaatggc actgctcgga tgcatagacg acgaggctgc cctttgaagc
      541 tgagcccggc aggccgcggt cgcgcgagcc ttcggccgcg cggtcgcgcg cacacttcag
      601 gccgaggagg ttggcctcgg agccgccgct cgtcagagtc ccgaacgaac cgccgccgta
      661 gcccacgagc gcgcagagcc accggagcac gcgcgcctcc acgatgctgg ccgacggcga
      721 gttgcgccac gccgcgccgt tctggttgat ggcggaggcg acggcgtcgg cccagacggc
      781 gacgggcagc ggcgtcgggt tgaagagccc gtagtagcgt gggctcggta tgttcatcgc
      841 gtgtgggagc aggtcacgcc tgagcttccc gaaaatctct tctggggctg cgggctcgcg
      901 gggcagcggc tcgtcgaaca aggcttcaag ctcggcggga gtggccttcg agcagaccgg
      961 cgcggagtcg agcgagcggg cgtagtcggc tataagctcg acggccatgc ggcccagccg
     1021 ctcgtgctcg tcgccgagcg tctcgcagct caaaccgggg ctgtgcttag tcactgacat
     1081 tcggatatgc ttcgcggcgg aagtccttgc ggcgaatttc tatgggtgaa tcaaagctac
     1141 caccagccgg cgagtttgac aaagcgctgg ccgagtcggc gccgctctac ggcgtcgaga
     1201 tgggcgagcg cgagcgccgg aagctcacgg agtatttcga gcttatctcg ctctggaaca
     1261 agcggcttca cctcgtcgcg ccctgcccgc ccgccgagtt cgccacgcgg catgtgctcg
     1321 aatcactcat ggcggcgcgc ttcctcgacg atgacgcgcg cgtggttgac ctgggctcgg
     1381 gcggcggcct tcccgtaatc ccctgcctcg tcgtcaagcc gcaaatcagc gcgactctcg
     1441 tagaggcttc agagaagaag gctgtgtttc tgcgcgaggc gctctggagg ctcgacgaaa
     1501 gacgcgcctc gcgcgtcatc gccgaaaggt tcgagagaat ggaagcgccc gaggcagact
     1561 tcatcacctg ccgcgcaatc gagcgcttca cggagcttct gccccgcgtc gtcgagtggg
     1621 cttcgcacgt cccgactctc ctgctcttcg gaggcgaatc tttacgcgcg cgtttggaag
     1681 agctgggact ttgtttcgac tcgctgaagg cgccggggtc ggagaggcgt tttcttttcg
     1741 tcgtgaggcg taagtgagcg gcggggcggg cggggaaaat ctcactggcc gttgccgagg
     1801 gcgcggtcga aaaactctat tacgcggcgg tcgtaggctt cgccctgctc gggcgtggcc
     1861 gaggcgagcg tgacgcccgt gagcggaagg tctgtgcgcg cctcgacgtt ctgctggttc
     1921 gggaagcagc gcaccagcga ctcggtcgag aaccggagcg cgccggcgtc ctcgccggaa
     1981 agcaggagca cccgcctgtc gccgaggcgc tcggcgtagt tgcaggcggg ctcgttgcgg
     2041 tagtcgcccg cgaaatagag ccgcgcgccg aggcgcgcca gcgcccgcaa ggccgcgttg
     2101 tcgagccccg tccgcgcgtt gacggccgag cccagaacct cgtccgggtc gtccggcacc
     2161 gagtcgagcg cgagcgcgcg cacgcccgcg cgcccctctg ccgctgcgac gagcgacgcg
     2221 taggcgccgg cctcgacgcc gtagaggccc agccgctcgc tcacgagcgg gcggccctgc
     2281 ggggtcttca atgaacgaag gtagtcgagc gcggcgagca cgtccgaggc ttcgagcacg
     2341 ccgaaggaag aggtcttgac gggcgggttc tcgccgtgcc cgcgcaggtc gggcagcagc
     2401 accgtcgtgt tcgacgactc gtttatcttc acgccgaggt tcaggagcca cgagcggtcg
     2461 gcgccgtagc ggtgaaggag cacgacggcg ggcgctccct ccgcgccgcg cagcagccag
     2521 ccgcgcgcct gcgtcccgtc gcggttcggc cagctctcct cggtcgcgcg caggccgcgg
     2581 tcgctcaact gcttgaagcc ttcgggcgtg atcaggtagg cgcgggccgg cgggcgtgtg
     2641 gcgccataga taagccagac ggtcgcgccg actgccgcca gcacgacgac gagcacgatg
     2701 ggcagcagag ccgtcaggag tttccgtccg gttgagcgtc gaggagacat cgagccgcca
     2761 ttgtaaatga tgaagccgcg cgtaagaagc ggagcgggcg gtcagcgagc gctttccccg
     2821 tcctcgtcaa cgcc
//
LOCUS       DASPKR010000731         4440 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1154867, whole genome shotgun sequence.
ACCESSION   DASPKR010000731 DASPKR010000000
VERSION     DASPKR010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4440)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4440
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1154867"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            242..1087
                     /locus_tag="VD968_19120"
     CDS             242..1087
                     /locus_tag="VD968_19120"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HYE16558.1"
                     /translation="MAKAEAKAQGAGGAAGAGAELVRYEAAGGVAVLTLNDPPANTYS
                     YEMMQSLDRAILRARMDEALQVIILTGDGEKFFSAGANIKMLTEVTPTFKYYFCLHAN
                     ETLSRLEQTPKLVIAAINGHCVGGGLEVAMAADMRVARKGAGKMGLPEVTLGVLPGTG
                     GTQRLARLVGKSRAIELMASGELFDFERGRELGIVNDIYEAATAADFLEQVKAYARRF
                     TTPDRAARAVGLIKRGVQTGAEIPFESGLALERELQQQLFQSEDAREGLEAYAQKRRP
                     RFTGK"
     gene            1099..1881
                     /locus_tag="VD968_19125"
     CDS             1099..1881
                     /locus_tag="VD968_19125"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HYE16559.1"
                     /translation="MYENLRVEYDEGIVTVTLDRPEKLNAFAGHMRRDLAEALEHAGS
                     DADVRAVVITGAGRAFCTGADVKYMGELMERGDVDEFKRLLGAGRRVLTTIRQMMKPV
                     VASVNGPAYGAGFNLALACDVRLAAESATFSQSFVKVGLHPDWGGSYFLPRAVPANIA
                     CEMFFLGDAFDARRAYEVGLVNRVVPDAELAAETRRLAERLRDAPHAAVAAAKRAVYL
                     SEEENLEHMLQYETEAQVQCFQSREARERVRAFLGRHAAPTK"
     gene            1906..2691
                     /locus_tag="VD968_19130"
     CDS             1906..2691
                     /locus_tag="VD968_19130"
                     /inference="COORDINATES: protein motif:HMM:NF009466.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYE16560.1"
                     /translation="MRLGGRTAFVTGGGRGIGRAVALLFAREGARVVVAARTEGEVAR
                     VAEEIRSERGPGAAHAVVCDVSDARSVAGAFAEARSRLGGEVGVLVNNAGVAESAKLH
                     DTTDELWQRHLGVNLSGTFYCMREALPAMIARGWGRVINVASVAGKTGAPYIAAYAAS
                     KHGVIGLTRSAALEVAARGVTVNAVCPGYVDTDMTAHAVENIQARTGRTAEEALEAIR
                     RMSPQNRLVTPEEVAALALLLASEEGRGITGQAINVDGGSVFY"
     gene            2723..3121
                     /locus_tag="VD968_19135"
     CDS             2723..3121
                     /locus_tag="VD968_19135"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HYE16561.1"
                     /translation="MALKPINPERLGRPRGYSNGMLAPREGRLLFVAGQIGWGEGQRL
                     VSDDFVEQFEQALRNVLAVVAEAGGAPGGVARLVIYVTDKREYTARTAELGERWRALM
                     GRHYPAMALVEVKGLLEDGAKVEIEATAVV"
     gene            3143..3952
                     /locus_tag="VD968_19140"
     CDS             3143..3952
                     /locus_tag="VD968_19140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006217226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase family protein"
                     /protein_id="HYE16562.1"
                     /translation="MLEPKSFLYEERAGVARITLNRPERLNALTFEVYRELTDAFRQL
                     QTEESVRAVVITGAGRAFCSGGDVRDIIGELQGRDVRGLLEFTRMTCELVRNIRQLRK
                     PVIASLNGTTAGAGACIALASDLRIASAEARIAFLFVRVGLSGADMGAAHLLPRLVGL
                     AKATELLYTGDFVTAEEALAMGLYNRVVPAEELEAATSELAERLARGPAFALGVTKEM
                     LNRELSVDLDTALELEAQAQAVCMQHPDYREAYEAFVQKREPRFEGRPAEG"
     gene            3952..>4440
                     /locus_tag="VD968_19145"
     CDS             3952..>4440
                     /locus_tag="VD968_19145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16563.1"
                     /translation="MSIANFVRAAPFLLCLAAAAAAQERRPDPSRHFQRAREIGDTTA
                     PGAAFEFESSGYSYRIASNGAGRRTKGEDVRRFSLRLEGVDWIERVSYQEYQDNILLV
                     WWVNDGGGAAAYVARLEQPSMRARWKQLVPALNVMAVREQGSLYLNGYGFLGRLDLGT
                     GEY"
BASE COUNT          722 a         1509 c         1562 g          647 t
ORIGIN      
        1 gcgcgctgac ggttttgaag accgcgccgc tcaccagagc gggtgcgcct ccacacgggg
       61 tcgttgcgaa cgactgatgc ggtgggtgag ccaaacccta cgcgcgcgcg ggcgcgcctg
      121 tcaagaggag agcctgcggg ctagcgcgct tgactcgcgg gtttcgccgc cccatcattg
      181 ccccggcgcg aatttttttc tgaccgcgcg ccgagcccaa acacaaacgg agccgaacgg
      241 gatggctaaa gcagaggcga aggctcaagg ggcggggggg gccgcgggcg cgggcgccga
      301 gctggtgcgt tacgaggccg cgggcggcgt ggccgtgctc acgctcaacg acccgcccgc
      361 caacacctac tcctacgaga tgatgcagtc gctcgaccgc gcgatcttac gcgcgcgcat
      421 ggacgaggcc ctgcaggtca taatcctgac gggcgacgga gagaaattct tctcagcggg
      481 cgccaacatc aagatgctga cggaagtcac gccgaccttc aagtactact tctgcctgca
      541 cgccaacgaa acgctctcgc gcctggagca gacgccgaag ctcgtcatcg cggcgataaa
      601 cggccactgc gtcggcggcg gtttggaagt tgcgatggcg gcggacatgc gcgtcgcgcg
      661 aaagggcgcc ggcaagatgg ggctgcccga agtcaccctc ggcgtgctgc ccggcacggg
      721 cgggacgcag cggctcgcgc gacttgtcgg caagtcgcgc gcgatagagc tcatggcctc
      781 gggcgagctc ttcgacttcg agcgcggccg agagctgggc atcgtcaacg acatctacga
      841 ggccgcgacc gccgccgact tcctcgaaca ggtcaaggct tacgcgcgcc gcttcacgac
      901 gcccgaccgc gccgcgcgcg ccgtcgggct gatcaagcgc ggcgtccaga ccggcgccga
      961 aatccccttc gagtcgggcc tcgcgttgga gcgcgagcta cagcagcagc tcttccagtc
     1021 ggaggacgcg cgcgaggggc tcgaagccta cgcgcagaag cgcaggccgc gtttcaccgg
     1081 gaagtagccg cgaaccttat gtacgagaac ttaagagtcg aatacgacga aggcatcgtc
     1141 accgtcacgc tcgaccgccc cgaaaagctg aacgccttcg ccggccacat gcgccgcgac
     1201 ttagcggaag cgttggagca cgccgggagc gacgccgacg tgcgcgccgt cgtcataacg
     1261 ggcgcgggcc gcgccttctg cacgggcgcc gacgtgaagt acatgggcga gctgatggag
     1321 cgcggcgacg tggacgagtt caagcgcctg ctcggcgcag gccggagggt cttgacgacg
     1381 atccggcaga tgatgaagcc cgtcgtggct tccgtcaacg gcccggccta cggggcgggc
     1441 ttcaacctcg cgctcgcctg cgacgtaagg ctcgcggccg agtcggccac cttcagccag
     1501 tccttcgtca aggtcggttt gcacccggac tggggcggct cctacttcct gccgcgcgcc
     1561 gtgcctgcca acatcgcctg cgagatgttc ttcctcggcg acgccttcga cgcgcgccgc
     1621 gcctacgagg tcgggctagt gaaccgcgtc gtccccgacg ccgagcttgc ggccgagacg
     1681 cgccgcttag ccgagcggct gcgcgacgcg ccgcacgccg cggtcgccgc cgccaagcgc
     1741 gcggtttacc tgagcgagga agagaacctc gagcacatgc tccagtacga gaccgaggcg
     1801 caggtgcagt gcttccagtc gcgcgaggcg cgcgagcgcg tccgcgcctt cctcggccgc
     1861 cacgcagcgc cgacgaaata gctccgggct cctgcctgag actttatgag acttgggggc
     1921 agaacggcct tcgtgacggg cggggggcgc ggcataggcc gggccgtcgc gctgcttttc
     1981 gcgcgcgagg gcgcccgcgt cgtcgtggcg gcgcgcaccg agggcgaggt cgcgcgcgtg
     2041 gcggaggaga ttcgttcgga gcgcggcccg ggagcggcgc acgccgtcgt ctgcgacgta
     2101 tccgacgcgc gctcggtcgc cggggcgttc gccgaggcgc gctcgcgcct gggcggcgag
     2161 gtgggcgtgc tcgtcaacaa cgcgggcgta gccgagagcg cgaagctcca cgacacgacg
     2221 gacgagctct ggcagcgcca cctgggcgtc aacctctccg gcactttcta ctgcatgaga
     2281 gaggcgctgc ccgcgatgat cgcgcgcggg tgggggcgcg tcatcaacgt cgcgtccgtc
     2341 gcgggcaaga ccggcgcgcc ctacatcgcg gcctacgcgg cgtcgaagca cggcgtcata
     2401 gggctcacgc gctcggccgc gctcgaagtg gccgcgcgcg gcgtcaccgt caacgccgtc
     2461 tgccccggct acgttgacac agacatgacg gcccacgccg tcgagaacat acaggcgcgg
     2521 acgggcagga ctgccgaaga ggcgctcgaa gccatcaggc gcatgagccc gcagaaccgc
     2581 ctcgtcacgc ccgaagaggt cgcggccctc gccctgctgc tcgcctccga agagggccgc
     2641 ggcatcacgg ggcaggccat caacgttgac ggcggctccg tcttctacta gaggtcaggg
     2701 caaaagccgt ctgcctgtca ttatggccct caaacccatc aaccccgaac ggcttgggcg
     2761 gccgcgcggc tactcgaacg ggatgctcgc gccgcgcgaa gggcggctgc tgttcgtcgc
     2821 ggggcagata ggctggggcg aggggcagcg gctcgtgagc gatgacttcg tcgagcagtt
     2881 cgagcaggcg cttcgaaacg tcctcgccgt cgtcgccgag gccgggggcg cgcccggcgg
     2941 cgtggcccgc ctcgtcatat acgtcacgga caagcgcgag tacacggcgc gcaccgccga
     3001 gctcggcgag cgctggcggg cgcttatggg ccgtcactac cccgcgatgg cgctcgtcga
     3061 ggtgaagggg ctcctcgaag acggcgccaa agtcgagata gaggccacgg ccgtcgtctg
     3121 aacccccctc cccctttaac ttatgctcga gcctaagagt tttctctacg aggagcgcgc
     3181 gggcgtcgcg cggataacgc tcaaccgccc ggagaggctg aacgccctga ccttcgaggt
     3241 ctatcgcgag ctgaccgacg cgttccgcca gttgcagacc gaagagtcgg tgcgcgccgt
     3301 cgtcataacg ggcgcgggcc gggccttctg ctcgggcggc gacgtgcgcg acatcatagg
     3361 cgagcttcag gggcgcgacg tgcgcggcct gctcgagttc acgcgcatga cctgcgagct
     3421 cgtgcgaaac atcaggcaac tgcgcaagcc cgtcatagct tctctgaacg ggacgaccgc
     3481 gggcgcgggc gcctgcatcg cgctcgcctc agaccttcgc atagcgagcg cggaggcgcg
     3541 cattgcgttc ctgttcgtcc gcgtggggct ctcgggcgcg gacatggggg cggcgcacct
     3601 gctgccgcgc ctcgtgggtc tcgccaaggc gacagagctg ctctacacgg gcgacttcgt
     3661 cacggcagaa gaggccctcg cgatggggct ctacaaccgc gtcgtccccg ccgaagagtt
     3721 ggaggcggcg acgagcgagc ttgcggagcg gctcgcccgc ggccccgcct tcgctttggg
     3781 ggtgacgaag gagatgctga accgcgagct gtcggttgac ctcgacaccg cgctagagct
     3841 cgaggcgcag gcgcaggccg tctgcatgca gcaccccgac taccgcgaag cctacgaagc
     3901 cttcgtgcag aagcgcgagc cgcgcttcga agggcgaccc gccgagggat gatgagcatc
     3961 gcaaactttg tgcgcgcggc cccgttcctc ctgtgcctcg cggccgcggc cgcggcacag
     4021 gagcggcggc ccgacccgtc gcgccacttc cagagggcgc gcgagatagg cgacacgacc
     4081 gcgccggggg cggccttcga gttcgagtcg tccggctact cctaccgcat agcctccaac
     4141 ggggccgggc gccgcacgaa gggtgaggac gtgcggcgct tcagcctgcg actcgaaggc
     4201 gtggattgga tagagcgtgt ctcttatcag gagtaccagg acaacatcct tctggtctgg
     4261 tgggtcaacg acggcggagg ggccgcggct tacgtcgcgc ggctcgagca gccctccatg
     4321 cgcgcccggt ggaagcagct cgtccctgcc ctcaacgtca tggccgtccg cgagcagggc
     4381 tccctgtact taaacggcta cggctttctc ggcaggctcg acctcggcac gggcgagtac
//
LOCUS       DASPKR010000732         3096 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_637734, whole genome shotgun sequence.
ACCESSION   DASPKR010000732 DASPKR010000000
VERSION     DASPKR010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3096)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3096
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_637734"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..819)
                     /locus_tag="VD968_19150"
     CDS             complement(<1..819)
                     /locus_tag="VD968_19150"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE16564.1"
                     /translation="MDRRRILIVEGNVELRTVLAQALGELGHDVVATGDRAEALARED
                     LEEFDLIISDLAEYADSGVQIVSELKRKRLFVPIVVTSEEAQQSGIVKAFKLGAANYV
                     RKPYDHEELRGIVEKTLGYKLRFIEDLKVLPYVREHIEFELPSDLSLMNGVLHYLIER
                     VAALGVIKPDTSNLFIALDEAFVNAVKHGNRGDARKLVRITADLSAREARFSIEDEGE
                     GFDVNSIPDPLDPANLFKTSGRGVLLIYNIMDEVEYNERGNRLTMVKRPESSLDA"
     gene            1121..1855
                     /locus_tag="VD968_19155"
     CDS             1121..1855
                     /locus_tag="VD968_19155"
                     /inference="COORDINATES: protein motif:HMM:NF015961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYE16565.1"
                     /translation="MQASARRESDEAALAAGRGGERVERAYRFADLSRYGLRQRLAIR
                     AADLVFYLLIRAVGLTVRFRVEGWEHWEEATRDGRPPIYACWHDRVFLATYFWRRRGI
                     VVMTSRSFDGEYIARFIQRFGYGAARGSSTRGGVGALVEMARLVRRGRPAGFMVDGPR
                     GPRHVAKTGAVLLAKKTGRPLLPFSVNAERRREIPSWDRTQIPLPFTRATVRIGAPLF
                     VRESAAAGELEQKRGELQRVLEELGD"
     gene            1985..>3096
                     /locus_tag="VD968_19160"
     CDS             1985..>3096
                     /locus_tag="VD968_19160"
                     /inference="COORDINATES: protein motif:HMM:TIGR01883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYE16566.1"
                     /translation="MINEERIKNLLLELVQIDSVSREERDVAQRVKQICEELGAEVEI
                     DGAGEKVGGNTGNVIARFPGTIPGAPAIMMSAHMDTVVPGKGVKPQVEGDIIRSDGTT
                     VLGGDDKSGIAVIIEAIRCLQEQNIPHAPIDAVFSICEEVGLLGAKHVDVSRLRARYG
                     IVFDSDDPGFLFTKGPSANHFEFHIHGLESHAGVAPEQGISAIRIAAEAINNMKLGRI
                     DEETTANIGVIRGGEATNIITNHVLLRGEARSRDDKKLEEQTRHIIKCLEDAAAKHEV
                     TVDGVTTRGRVESHVTREYFAMDVPDDSRVVKLVKGAAARMGLDVKTLASGGGCDANI
                     FNKKGIECANLGTGMRAIHTVKEWLDVKDMYASARMT"
BASE COUNT          550 a         1040 c          996 g          510 t
ORIGIN      
        1 cgcgtcgagc gagctttcgg gccgcttgac catcgtcagg cggttgccgc gctcattgta
       61 ctcgacctcg tccatgatgt tgtagatgag cagcaccccg cgccccgaag tcttgaagag
      121 gttggcgggg tcgagcgggt cgggtatcga gttcacgtcg aagccctcgc cctcgtcctc
      181 gatgctgaag cgcgcctccc tcgccgaaag gtcggccgtg attcgcacga gcttacgcgc
      241 gtcgccgcgg ttgccgtgct tgacggcgtt gacgaaagcc tcgtccagcg cgataaagag
      301 gttcgacgtg tcgggcttga tgacgccgag cgccgcgacg cgctcgatga ggtagtggag
      361 cacaccgttc atcaaggaga ggtcgctcgg cagctcgaac tctatgtgct cgcggacgta
      421 agggaggact ttgaggtctt cgatgaagcg cagcttgtag ccgagcgtct tctcgacgat
      481 gccgcgcagc tcctcgtggt cgtagggctt gcggacgtag ttggccgcgc cgagcttgaa
      541 cgccttcact atcccgctct gctgcgcctc ctcggacgtg acgacgatgg ggacgaacag
      601 gcgcttgcgc ttcagctccg agactatctg cacgcctgag tcggcgtact cggcgaggtc
      661 tgagatgatc aggtcgaact cttcgaggtc ttcgcgggcc agggcctcgg cgcggtcgcc
      721 ggtcgccacc acatcgtggc ccaactcgcc cagcgcctgc gccagcaccg tgcgcagctc
      781 gacgttgcct tctacgataa gtatccgacg cctgtccatc cgaactctta agcagtccga
      841 ccgagcgctc tcgacttgcg aaaaccttga aaatccaggg agggggcgga aagtctttcg
      901 ccgcgaactc aagggctttc cgccaactcc gtacgaagcg aggccgcacg gcgttccgca
      961 atatagcaga agtcaggagt cggaagtcag gagacggggg acttttttac actgcccccg
     1021 ccccgtcggg agcgggcaac gcgccgcggc aaccactcct ccttccgtct tccgactcct
     1081 gacttctgac tcccgttttt gttagactcc ccgaaacctt atgcaggcgt ccgcccggag
     1141 agagtctgac gaggccgcgc tcgcggccgg ccgcgggggg gagcgcgtag agcgcgccta
     1201 ccgcttcgcc gacctctccc gctacggctt gcgccagcgc ctcgccatac gcgccgcaga
     1261 cctcgtcttc tacctgctca taagagccgt cggcctgacg gtgcgcttcc gcgtcgaggg
     1321 gtgggagcac tgggaggagg cgacgcgcga cgggcgcccg cccatctacg cctgctggca
     1381 cgaccgcgtg tttcttgcga cctacttctg gcggcggcgc ggcatcgtcg tgatgacatc
     1441 gcggagcttc gacggcgagt acatcgcgcg cttcatacag cgcttcggct acggcgcggc
     1501 gcgcggctcg tccacgcgcg gcggcgtggg cgccttagtc gagatggcgc ggctcgtgcg
     1561 ccggggccgc cccgccggct tcatggttga cggcccgcgc ggcccgcgcc acgtagccaa
     1621 gacgggcgca gtgcttttgg cgaagaagac cgggcggccg ctgctgccct tctccgtcaa
     1681 cgccgagcgc cgccgcgaaa tcccgagctg ggatcgcacg cagatacccc tgcccttcac
     1741 gcgcgcgacg gtgcgcatcg gcgcccccct attcgtccgc gagtcggccg cggccggaga
     1801 gctcgaacag aagcgcgggg agcttcagcg cgtgctcgaa gagttgggcg actgactgcc
     1861 cgagcgtggc gtggcgcgcc gcccgccctc tgtagtagga ttgccccaat tcctctgcag
     1921 ctttttcggc aaccgcgact ttaatgattc cgggctcccc gaagcccgca cgggagaagc
     1981 gtgaatgatt aacgaggaac gcatcaagaa ccttctgctg gagctagtgc agatagactc
     2041 ggtctcgcgc gaggagcgcg acgtggcgca gagggtcaag cagatttgcg aggagctggg
     2101 cgccgaggtc gagattgacg gcgcgggcga gaaggttggc ggcaacaccg gcaacgtcat
     2161 cgcgcgcttc cccggcacga tccccggcgc ccccgcgata atgatgagcg cgcacatgga
     2221 cacggtcgtc cccggcaagg gcgtaaagcc ccaggtggaa ggcgacatca ttcgctcgga
     2281 cgggaccacc gtcctcggcg gcgacgacaa gagcggcata gccgtcatca tcgaggcgat
     2341 acgctgcctg caggagcaga acatccctca cgcgcccatt gacgccgtct tctccatatg
     2401 cgaggaggtc ggcctgctgg gcgccaagca cgtggacgtg agccggctgc gcgcccgcta
     2461 cggcatcgtc ttcgactccg acgaccccgg cttcctcttc accaaaggcc cctcggccaa
     2521 ccacttcgag ttccacatcc acggcctcga atcccacgcc ggggtcgcgc ccgagcaggg
     2581 aatctctgcc ataaggatag cggccgaggc catcaacaac atgaagctcg gccgcataga
     2641 cgaggagacc accgccaaca taggcgtcat acgcggcggc gaggccacga acatcatcac
     2701 gaaccacgtg ctcctgcgcg gcgaggcccg ctcgcgcgac gacaaaaaac ttgaagagca
     2761 gacgcggcac atcatcaagt gcctcgaaga cgccgccgcc aagcacgagg tcacggtgga
     2821 cggcgtcacc acgcgcggcc gcgtcgagtc gcacgtcacg cgcgagtact tcgcgatgga
     2881 cgttcccgac gactcgcgcg tagtcaagct tgtgaagggc gcggcggcgc gcatgggcct
     2941 cgacgttaag acgctcgcct cgggcggcgg ctgcgacgcc aacatcttca acaagaaggg
     3001 catcgagtgc gccaacctcg gcacgggcat gcgcgccata cacaccgtca aggagtggct
     3061 cgacgtcaaa gacatgtacg cctccgcccg catgac
//
LOCUS       DASPKR010000733        16639 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1019610, whole genome shotgun sequence.
ACCESSION   DASPKR010000733 DASPKR010000000
VERSION     DASPKR010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 16639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16639)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16639
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1019610"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..860)
                     /locus_tag="VD968_19165"
     CDS             complement(<1..860)
                     /locus_tag="VD968_19165"
                     /inference="COORDINATES: protein motif:HMM:NF025617.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4350 domain-containing protein"
                     /protein_id="HYE16567.1"
                     /translation="MKGRLAIFLTVVVMLVVLVALNAASYVRVEREGDSEFFPDRSTS
                     NAGGTGTRAFYEFLEESGHEVTRWEQPPASLADAGDEAPKTFVIVGETRRAVEREDAS
                     ALLAWARSGGRLVIIDRSPNPMLLPAAGGWRVSAQLVEAPGPGVRPDDYQTMTRDTPL
                     VSPAQPTSLTRDVEHVTRSRFAARLQVAEAEAFGFGYGQPPPPKPDASPAPTYPDEGE
                     DDEVFWEDEEEPPPPPAPAARIGPGSEPPPAAAPYEPQAPVVHLLDGRHGPGALLVDY
                     AYGRGRVVVL"
     gene            complement(902..1969)
                     /locus_tag="VD968_19170"
     CDS             complement(902..1969)
                     /locus_tag="VD968_19170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4129 domain-containing protein"
                     /protein_id="HYE16568.1"
                     /translation="MKGKPNKISVRLSAVAALLLALLLPARAAAASTLADYRERLQTA
                     AAMVQGLAEEGEELTRKGSGEILAEVRLMLPAAEQVERAGAPALEVDNSWLHDALDEY
                     ERRAPGLKPEARSDALAALALRIEALGARVSELERGAAQARDKDAEKGRLNNILRRPE
                     FNRETAEGGALRRLVEQFFEWVRSLMPDVKPLRPGTNARVSQGVQWLVFGLCAAVLAY
                     VGWLLWRRRRPSTKLRLTREARVVLGERLEADKEAADLLEEAEALARAGDLRGAIRKS
                     YIALLCELGDRRVIRLAQHKTNRDYLQAVRKGAPPQLYTEMLPLTFNFELHWYGLQQA
                     SERDWEDFRTRCRQALKLAAA"
     gene            complement(1966..3081)
                     /locus_tag="VD968_19175"
     CDS             complement(1966..3081)
                     /locus_tag="VD968_19175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16569.1"
                     /translation="MATFAVNQLQIAPLGAGDLIDRTVRLYRRHFMALIRASAPPVVI
                     SSVGSILFSVVSRAIGMTESEGRLIIYVPLAFLGLFILFLGFIAQLIVMGGASRNLVM
                     HLLWDEPVTARLIYRSVRSRFWGLLGATLMVVLFLVIAMTLASVVLFAAIMLMILVAI
                     LTAVVGVAWVTAVASLLTWVVGLVLWLYVFFLIAGRVAYVPQAMMVEGLSVTAAFGRS
                     GSLARGNVRRLMAMFLFTTFAGYSAVMLLLVPLGWFGYLNGISPFEMDATRLPAWYAV
                     SQQVIAQLSTILLAPVWMLGLSLLYVDERVRYEGYDIELMAAQRFGEMPALPAGVSTP
                     LAPAIAAPQQPAPPAPPPRERGGGAPPGSILGLTGKG"
     gene            complement(3159..4160)
                     /locus_tag="VD968_19180"
     CDS             complement(3159..4160)
                     /locus_tag="VD968_19180"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE16570.1"
                     /translation="MRALIHTALAVALAAAAMPSALAQRRQRSLPPIPITITGQVRVT
                     RGDAPAERALVRLETSNGEYVGEVETDRTGKFRFTNLSPVRYVVTARAPGYEAASQQV
                     DLQTSSTEHVQLRISPEQAKSSSSPAASPLALSDPNVPLEAQKEFELGRSAVARGRLD
                     EGLAHLGKAVRLYPNFYEAHLLIGTAQMDARRWDESAEALARAAEVNPKSAAARFALG
                     EVQLRRKKFDEAERALAEGLRLEPRSALGHFTLGRVHWERGDYVKAGPEVGRALQLNP
                     QFAEAHLLAGNILLRARQAENALTEFEEYLRLAPDGEFAPQARQMVQKIKQALAEKK"
     gene            complement(4307..7666)
                     /locus_tag="VD968_19185"
     CDS             complement(4307..7666)
                     /locus_tag="VD968_19185"
                     /inference="COORDINATES: protein motif:HMM:NF025006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE16571.1"
                     /translation="MKTESLDLRRRGASIFKAFLLAATLCATLGAARAQDRSTTGSIG
                     GTITDVNGAAVPSAIVTVTGASLGAPRTATTNEEGLYKVDNLTPGQYAVRVELSGFKA
                     ANVENVQVNVGRESTISLKLEPGQVSEVVTVTDAAAADLSSTAVGQNLSDQLFNNVPV
                     QRSVSSLFYLSPGASDSINGGRDNPSIAGGSALDNLYIADGVNITDAAFGGIGTFTRT
                     YGSLGTGINTSFIKEVQVKTGGFEPQYGQSQGGIVNIITQSGTNEYHGSLYGFARPRS
                     FEAERRQADDVRVNKQGKLLSEENYDVGFDFGGYVPGARDKLFFFGSFNPTVRRQIVE
                     GVSANESDRAAGNGDTINSGLFNLLGEHAQRFRTLNYAFKMDYAPSASHQFTFSMFGD
                     PTKTNLSSFRLLNIDTTTAMSRLDFGTRNTALRYNGALTPTWTLSASFSQGRNHFDES
                     GYADVNQVAIRLPIDPVRGNYFQQGIGFVEPTQSTNYRATFDTTKVANFWGSHTFGLG
                     YQFQRSLYSGQRLRSGPRHAIPAANASGIPLTEIGGTPDAIGALFNVQWRLRAQSEAC
                     TLCPRLNVRGTDVPVSLQVYRGEFGPPAFDTYGNYHAAYVQDTWRINKYLSVLVGLRH
                     EQERVVGSPDETTGDRYAYSFTGQWAPRIGVTVDPLGRGKTKAWYNYGRFFEFLPLDA
                     AERSLSRELDFTGFRFAPDFTVDEGGVRRVRLGPGGTIVPVVDSAHLLTGATGSGNVP
                     GAGNISRSALVAIAPGTKLGFSDEHLFGFEQQLPKNLVLSVRYQDRRLKRIIEDAAIL
                     SPEAANAGLGQTYFIGNINSRLDAATNVQQIRFTPAFDADGHITNAPAGCFGGGGASA
                     VFVTEVTPGNAVCLGPTGIGPDLASLNTPDGIPDGFVDPVRIYRAFEFELNKRFSNGW
                     QMLSNFRVASLRGNYEGHLRNDNGQTDPGISSLFDFTAGDFNLLGDQFAVGPLNTDRR
                     FIANFYGNYTFGEGGSRFGGRGLRGLNLGVGLHMESGVPISEFLAHPVYLNAGEVPVG
                     GRGKLGRTPFYTKLDLHADYPIRMGERTSLRLIADFFNVTNSRKLLYPDQFRELDLGA
                     ENPDFLQPSTISLTSGYRLPFSMRLGARFEF"
     gene            8310..11411
                     /locus_tag="VD968_19190"
     CDS             8310..11411
                     /locus_tag="VD968_19190"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYE16572.1"
                     /translation="MRTPIRIFTVFALLLSLVVGAAAQTTTTGSIEGTVVDVNGAAVP
                     GVVVTATRAGGRSQTATTNDEGIYRLSNLEPGRYTVTVEAAKGFGRFEQADIEVNLGR
                     TSNLTVSLRPQGAAETVEVTASSGAAVDVTTNTTGTNVSTEQFSNFPTQRTVQSLYTI
                     APTVSRSGLRDASGRDRDPSVAGSSGPENNYILDGVQVTDPAFGGSGANLPFEFVQEI
                     EIKTGAYGADIGKSTGGVFNVITKSGTNEFRGDVFGYFTTKGLVREVKSSAIPFTGSA
                     PNGFSEVDAGFDIGGPIVKDKLWFFGAFNPQRRENFFLTQTFQDEVNNEIKTPFYAGK
                     ITWGINQSHTFTFSTFGDFTTQEGFLFGQSGFGASELPFRGKTETGGSNYAFRLNSTF
                     TPNFIGEFSAGLHLQRANTIPEDADRSLITDRFAVLRNGAVLTPVETNVTLSNGLRAA
                     FVNGTGGTIQRNFVRQGFGLQSDQDRNRYEIGARMQNIWGKHTFKYGFEANQNIYRIN
                     TLSTGPELTFTGDPSLPPLLSRIENRFAVFRVEGSTLIVPDETRRARAQQVLDEGGFA
                     GQGITSVAIGTVSLTNLVNPFLFLDVVRVRDFRLNTGDDQTTTSVQSFYFQDDWKLTR
                     NLQLNLGLRWDFQQAKSIEGAEGVNYFNLNDFKSNTQPRLGFIWDFTGEGRGKVFANY
                     ARFLETPIPLDINVRASGNNIQTDWNINVSRLNAPSGSAVLLNFGNLGNHPTPTDPGI
                     KPQTVDEYTAGIEWGPANMRDLSFGFRGIYRAQDEVIEDGSFDDGGHYFLFNPGRRGS
                     DGEVTTEDLACSDPAIGCFGPARRYYRALEFTATKRFSNNYQFIASYVFSSLIGNYEG
                     LFRNDNGQSDPNITSLFDLVSLLNGIYGRLPNDRPHQFKFDGSYRWPFGLLTSASFRA
                     QSGIPFNALIPHPLYGDNEGFAVPRGTAVNPITGKTRTPTTYNLDLGAYYPIQFGENR
                     QLRFQLDWFNVTNAQRAIRQDETLRINSGAPGVAAVPNPFYGNGTIFQFPSALRLGVK
                     FQF"
     gene            11579..12661
                     /locus_tag="VD968_19195"
     CDS             11579..12661
                     /locus_tag="VD968_19195"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE16573.1"
                     /translation="MLLRKARALTRAFWPYLSAPLLALLASAAAATTAPAQVGGIDPS
                     GTGGRHSVQGRLMSPAGTRTDLRLKVRLESTGFGDLWVYSDANGYFKFQSLKAGTYTI
                     IIEGGDYFETHRENVFIEPGNVSSRRGTAGVPISRPITLQIYLRPKRDEALANLARPG
                     VINAALASVPKPAADLYQKALAAERRGDNSKAIEHLKATVQLHPDFPLALSKLGVLYL
                     VEKQPEKAADSLRSALKLMPDDYVTLLSYGRALFDRAQFAEAEEQFRKAARKNNASPS
                     AHFYIGLIMLKRRDLDGAEQQLRKAVELGGNQIAIAHYYLGGIYWDRRAYARAADELE
                     TYLRLTPEAQDAPRIRATIKELRGKK"
     gene            13020..16283
                     /locus_tag="VD968_19200"
     CDS             13020..16283
                     /locus_tag="VD968_19200"
                     /inference="COORDINATES: protein motif:HMM:NF025092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE16574.1"
                     /translation="MLRRIFDPRVWPVLALAAFAFLSAAAPAHAQLTRGSISGTVRDE
                     SGAVVPGAEVRILDPRTNTSRSATTDDNGYYRVGALDPGSYSVIVERAGFAKVENREV
                     VVQAALDTTFDVALKVGNVTEVVNVTTQSEGIALNKTNPTIGLSVGKELIVDLPLSAA
                     RDVNQLALLSPNAFPAPGSSGISVNGQRARNNNFTIDGTDNNDISVTIPTSEIFPEAV
                     GEFQVLTNAYSAEFGRNSGAQINVITRSGGNDFHGDVFHFYRGAKLNALSNIEKQAGL
                     TRPTQFVRNQFGFAVGGPLHLPRFGEGGPAIISGRDRTFFFVGFQEDLIRQSVLGGTV
                     RIPTPAGFAALQGVPLRPATSTRPAQSAASRAAVLSSLSFLNQVYQNNPVFTSVNTTA
                     AVINGVPIETGNVRLTRPRDDDGFNYIMRFDHKLTENDNLTFRYSRDASYSSNLTSNT
                     TFGPIFSARQDIIDQNMALSLTHVFGPRVLNEFRGSYVRRNLAFPENDPTTPTTTITG
                     FFTIGGLSNFPQGRIQNSYQFQDIVSVLMGRHAMKIGADIRHIHLFNQAAFDTKGTFA
                     FSNFANFVNNIGTSYQQALQVASFDARQWQQYYFFQDDWRVTPNFTLNLGLRYETSNN
                     PFGFFGARDTESLNALVPGPVPRDTNNWAPVIGFNYSPRFEGDGLLARFFGDGRTAIR
                     GGYRVNYDVLFYNILTVNASNYPRVVVPRQDNPVDLFPSVTPLSGSAVFNPLATYVNT
                     PEDSVTPYAHIYSLSVQREFGRNYVLEVGYSGSASRAQINQLQANNATLSAAQAATVI
                     ATGDPLSIPTVQQRRQFPQFGPRVLIATTAEANYNAGFASFNRRLGGEGFMRNFQFSA
                     AYTFSKLMSNNDESLGVADITAGSPQIPQDFTNIDAEWSVSAFDRTHRLVVSYLYETP
                     TPGFAKGNALRHLFGGWQITGSTAGTSGQPFSILTGVDTNGNGAGGDRPNVNPNAPLT
                     PDPDTGNLRTFTAPGRYLVPRNASGAILTFSMPNGGGNLGRNTLRAPAFWNTNLGIQK
                     RFYLGEVTRFAIRADLLNAFNQDNFGIPVNSLSSADFGKNLNNFGNRSITVGWKFTF"
     gene            16416..>16639
                     /locus_tag="VD968_19205"
     CDS             16416..>16639
                     /locus_tag="VD968_19205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16575.1"
                     /translation="MSTARSFLRPLSARLLLAPLGALLLLSPLAAPARAQRATRDLRG
                     SGGVQVNVKSFDQRDAITGAEVSLVAAGRG"
BASE COUNT         2859 a         5798 c         5351 g         2631 t
ORIGIN      
        1 ctcaagacga ctacgcggcc gcgcccgtat gcgtagtcaa cgaggagcgc gccggggccg
       61 tgccgcccgt ccagcagatg cacgacgggc gcctgcggct cgtagggcgc cgcggccggc
      121 ggcggctcgg agcccggccc gatgcgcgcg gccggcgcgg gcggtggcgg cggctcctcc
      181 tcatcctccc agaaaacttc atcgtcctcg ccttcgtccg ggtacgtagg ggcaggcgac
      241 gcgtcgggct tcggcggggg cggctggccg tagccgaagc cgaacgcttc ggcctccgcg
      301 acttgcagac gcgcggcgaa gcgcgagcgc gtcacgtgct caacgtcgcg cgtgagcgag
      361 gtgggctgcg cgggcgagac gagcggcgtg tcgcgcgtca tcgtctggta gtcgtcgggc
      421 cggacgccgg ggccgggcgc ttcgacgagt tgcgccgaga cgcgccagcc gccggccgcg
      481 ggcagcagca tcgggttggg gcttcggtca atgatgacga ggcggccgcc cgagcgcgcc
      541 cacgcgagca gggcgctcgc gtcctccctc tcgacggcgc ggcgcgtctc gccgactatg
      601 acgaaagtct tcggcgcctc gtcgcctgcg tcggcgagcg aggcgggcgg ctgctcccag
      661 cgcgtgacct cgtggcccga ctcttccaga aactcgtaga aggcccgcgt ccccgtcccg
      721 cccgcgttcg acgtggagcg gtccgggaag aactcggaat ccccctcgcg ctccacgcgc
      781 acgtaggacg cggcgttcaa ggccacgagc accacgagca tcacgactac ggtcaggaag
      841 attgccaggc ggcccttcat aaaaatctcg ctgtcggggg tcggggttaa agccctcgcg
      901 ctcaggccgc ggccagcttc agcgcctggc ggcagcgtgt gcggaagtct tcccagtcgc
      961 gctcgctcgc ctgctgaagg ccgtaccagt gcagctcgaa gttgaaggtg agcgggagca
     1021 tctcagtgta gagctgcggc ggcgcgccct ttcgcacggc ttgcaggtag tcgcggttcg
     1081 tcttgtgctg cgccagtctt atgacgcgtc ggtcgcccag ctcgcagagc agcgctatat
     1141 aagacttgcg tatcgcgccg cgcaggtcgc ccgcgcgcgc gagcgcctcg gcctcttcga
     1201 gcaggtctgc cgcctccttg tcggcctcca gtcgctcgcc caggacgacg cgcgcctcgc
     1261 gcgtgagcct gagcttcgtc gagggcctgc gacggcgcca gaggagccag ccgacgtagg
     1321 ccagcaccgc ggcgcacagc ccgaagacga gccactgcac gccctgcgag acgcgcgcgt
     1381 tcgtacccgg ccgcagcggc ttcacgtccg gcatgaggct tcgcacccac tcgaagaact
     1441 gctcgacgag gcggcggagc gcgccgccct cggccgtctc gcggttgaac tcgggccggc
     1501 gaaggatgtt gttgagcctg cccttctcgg cgtccttgtc gcgggcctgc gccgcgccgc
     1561 gctcaagctc ggagaccctc gcgccgagcg cctcgatcct cagggcgagc gccgcgagcg
     1621 cgtcggagcg cgcctcgggc tttagccccg gcgcccgtct ctcgtactca tccagcgcgt
     1681 cgtgcagcca agagttgtca acttcgagcg cgggggcgcc cgcgcgctcg acctgctccg
     1741 ccgcgggcag catcagtcgc acttccgcca gaatctcccc cgagcccttg cgcgtaagct
     1801 cttcgccctc ttccgccagg ccctgaacca tagcggccgc agtctgcaag cgctcgcggt
     1861 agtcggcgag cgtcgaggcg gcggccgccc gcgcgggcag cagcagcgcg agcagcaggg
     1921 ccgcgacggc cgagagcctg acgctgattt tgttcggctt gcccttcatc ctttgcccgt
     1981 gaggccgagt atcgagccgg gcggggcgcc gccgccccgt tcgcgcgggg gcggcgcggg
     2041 cggcgccggc tgttgagggg ccgcgattgc gggcgcgagc ggcgtgctca cgcccgcggg
     2101 cagcgccggc atctcgccga agcgctgcgc cgccataagc tctatgtcgt agccctcgta
     2161 gcggacgcgc tcgtcaacgt agaggagcga gaggcccaac atccagacgg gcgccagcag
     2221 tatcgtgctc agttgcgcta tgacctgctg gctgacggcg taccacgcgg gcaggcgcgt
     2281 cgcgtccatc tcgaaggggc ttatgccgtt caggtatccg aaccagccga gcggcaccaa
     2341 gagcagcatg actgccgagt agcccgcgaa cgtagtgaac agaaacatcg ccatcaggcg
     2401 gcggacgttc ccgcgcgcga gcgagccgct gcggccgaag gcggccgtca cgctcaggcc
     2461 ctcgaccatc atcgcctgcg gcacgtaggc cacccgcccc gctatcagga agaagacgta
     2521 gagccagagg acgagcccca cgacccacgt cagaaggctc gcgacggccg tgacccacgc
     2581 gacgcccacg acggccgtca ggatggcgac gagtatcatc agcattatcg ccgcaaacag
     2641 cacgaccgac gcgagcgtca tcgctatcac gaggaagagg acgaccatca gcgtcgcgcc
     2701 cagcagcccc cagaagcgcg agcgcacgct gcggtagatg agccgcgcag tcaccggctc
     2761 gtcccacagc aggtgcatca cgaggtttcg cgacgcgccg cccatgacga ttagctgcgc
     2821 gatgaagccg aggaacagta tgaagaggcc gaggaaggcg agcgggacgt agatgatgag
     2881 ccggccctcg ctctccgtca tccctatcgc gcgcgagacc accgagaaga gtatcgagcc
     2941 gacggacgag atcacgacgg gcggtgcgct cgcgcgtatg agcgccatga agtggcgccg
     3001 gtagagcctc accgtgcggt ctatgaggtc gcccgcgccg agcggcgcta tctgaagttg
     3061 gttgacagcg aaagtcgcca agcgcccagt cccgaagccc gtcttgagag gccagcggcg
     3121 ggattgtagc acgggcgcgg ggccgggcgg cgggcgcgct acttcttctc ggcgagcgcc
     3181 tgcttgattt tctgcaccat ctggcgggcc tgcggggcga actcgccgtc gggggcgagg
     3241 cgcaggtact cctcgaactc cgtgagggcg ttctcggcct ggcgagcgcg aagcagtatg
     3301 ttgccggcga gcaggtgcgc ctcggcgaac tgcgggttga gctgcaaagc gcgcccgacc
     3361 tcggggccgg ccttgacgta gtcgccgcgc tcccagtgga cgcgcccgag cgtgaagtgg
     3421 ccgagcgccg atctgggctc gagcctcaag ccctcggcga gcgcccgctc ggcctcgtcg
     3481 aacttcttcc ggcggagctg gacttcgccg agggcgaagc gcgcggccgc agacttcggg
     3541 ttcacctccg ccgcgcgcgc gagcgcttcg gccgactcgt cccatcggcg cgcgtccatc
     3601 tgcgcggtgc caatgagcag gtgcgcctcg tagaagttcg ggtataggcg gacggccttg
     3661 ccgaggtgcg cgagcccctc gtccaaccgg ccgcgcgcca cggccgagcg cccgagctcg
     3721 aactccttct gagcttcgag cggcacgttc gggtcggaga gcgcgagcgg gctcgcggcc
     3781 ggcgatgacg acgacttcgc ctgctcgggc gagatgcgga gctgcacgtg ctcggtcgag
     3841 ctggtctgca aatcaacctg ctggctcgcc gcctcgtagc cgggcgcgcg ggccgtcacc
     3901 acgtagcgga cgggcgagag gttcgtgaag cggaacttgc ccgtgcggtc ggtctcgacc
     3961 tcgccgacgt actcgccgtt cgaggtctcg aggcgcacga gggcgcgctc ggccggcgcg
     4021 tcgccgcgcg tgaccctgac ctgccccgtg atggttatgg ggatgggcgg gagcgagcgc
     4081 tggcgccgct gcgcgagcgc ggagggcatg gccgcggcgg cgagcgcgac ggcgagggcc
     4141 gtgtgaatca aggcgcgcat gggagctaac ctccggggac gggaagtcgt cggaagagag
     4201 attgacgggg gagaggatga accaacttcg ccattaaaac aagagggagg ggtcctcgcc
     4261 cgaagcggtt ccccctccct ttccggtggc gcggtgccga gccctcctag aactcgaagc
     4321 gcgcgccgag ccgcatgctg aagggcaggc ggtagcccga agtcaggctg atggtcgagg
     4381 gttgcaggaa gtccgggttc tcggcaccga ggtcgagctc gcggaactgg tcggggtaga
     4441 ggagcttgcg gctgttcgtg acgttgaaga agtcggcgat gagccgcagg ctcgtcctct
     4501 cgcccatcct tatcgggtag tcggcgtgca ggtcgagctt cgtgtagaag ggagtgcggc
     4561 cgagcttacc gcggccgccc accggcacct cgcccgcgtt cagatagacg gggtgtgcga
     4621 ggaactcgct gatggggacg cccgactcca tgtggaggcc gacgccgaga ttcaggccgc
     4681 gcaggccgcg cccgccgaag cgcgagccgc cctcgccgaa cgtgtagttg ccgtagaagt
     4741 tcgcgatgaa gcggcggtcg gtgttgagcg ggccgacggc gaactggtcg ccgagcaggt
     4801 tgaagtcgcc cgccgtgaag tcgaagagcg agctgatgcc ggggtcggtc tgcccgttgt
     4861 cgttgcgcag gtggccctcg tagttgccgc gaagcgaggc gacgcggaag ttcgagagca
     4921 tctgccaccc gttcgagaaa cgcttgttca gctcgaactc gaaggcgcgg tagatgcgca
     4981 ccgggtcaac gaagccgtcg ggtatgccgt cgggcgtgtt cagggaggcg aggtcggggc
     5041 ctatgccggt ggggccgagg cagacggcgt tgcccggcgt gacttccgtg acgaagaccg
     5101 ccgaggcgcc gccgccgccg aagcagccgg ccggggcgtt ggtgatgtgg ccgtcggcgt
     5161 cgaaggcggg cgtgaagcgt atctgctgca cgttggtcgc cgcgtcgagg cgcgagttga
     5221 tgttgcctat gaagtaggtc tggccgagcc cggcgttcgc ggcctcgggc gagagtatcg
     5281 ccgcgtcctc gatgatgcgc ttcaggcgcc tgtcctgata acgaaccgag aggactaagt
     5341 tcttcggcaa ttgctgctcg aagccgaaca ggtgctcgtc cgagaagccg agcttcgtgc
     5401 cgggcgcaat cgcaacgagg gccgagcgcg agatgttgcc cgcgccggga acgttcccag
     5461 acccggtggc gcccgtcagg aggtgcgccg agtcaacgac ggggacgatg gtgccgcccg
     5521 gcccgagccg gacgcggcgc accccgccct cgtcaactgt gaagtcgggc gcgaagcgga
     5581 agcccgtaaa gtcgagctcg cgcgagagcg agcgctctgc ggcgtccagg ggcaggaact
     5641 cgaagaagcg gccgtagttg taccaggctt tcgtcttgcc ccggccgagc gggtcaaccg
     5701 tgacgcctat gcgcggcgcc cattggcccg tgaagctgta ggcgtagcgg tcgcccgtgg
     5761 tctcgtcggg gctgccgacg acgcgctcct gctcgtggcg caggccgacg agcaccgaca
     5821 ggtacttgtt gatgcgccag gtgtcctgca cgtaggccgc gtggtagttg ccgtaggtgt
     5881 cgaaggccgg cgggccgaac tcgccgcgat agacctggag cgagacggga acgtccgtcc
     5941 cgcgcacgtt caggcgcggg cacagagtgc aggcctcgct ctgcgcgcgc agccgccact
     6001 gcacgttgaa gagcgcgccg atggcgtcgg gcgtgccgcc tatctccgtg agcgggatgc
     6061 cgctggcgtt ggcggccggg attgcgtgac gggggccgct gcgcaggcgc tggcccgagt
     6121 agagcgagcg ctggaactga tagcccagcc cgaaggtgtg cgagccccag aagttggcta
     6181 ccttcgtcgt gtcgaaggtc gcgcggtagt tggtgctctg cgtcggctcg acgaacccga
     6241 tgccctgctg gaagtagttg cccctgacgg ggtcaatcgg gagccttata gccacctggt
     6301 tcacgtcggc gtagcccgac tcgtcgaagt ggttgcgccc ctggctgaac gaggcgctca
     6361 gcgtccacgt cggcgtgagc gcgccgttgt agcgcagggc cgtgttgcgc gtgccgaagt
     6421 cgagccggct catcgccgtc gtcgtgtcta tgttgagcag ccggaacgaa gagaggttcg
     6481 tcttcgtcgg gtcgccgaac atggagaagg tgaactggtg gctcgcgctc ggcgcgtagt
     6541 ccatcttgaa ggcgtagttg agcgtgcgga agcgctgtgc gtgctcgccc agcaggttga
     6601 agaggccgga gttgatcgtg tcgccgttgc cggccgccct gtccgactcg ttggcggaga
     6661 cgccctcgac tatctgccgg cgcaccgtcg ggttgaacga gccgaagaag aacagcttgt
     6721 cgcgcgcccc ggggacgtag ccgccgaagt cgaagcccac gtcgtagttc tcctccgaga
     6781 ggagcttgcc ctgcttgttg acgcgcacgt cgtcggcctg gcgtcgctcg gcctcgaacg
     6841 agcgcgggcg cgcgaacccg tagagcgagc cgtggtactc gttcgtgccc gactgcgtga
     6901 tgatgttgac gatgccgccc tgcgactggc cgtactgcgg ctcgaagccg cccgtcttga
     6961 cctgcacctc cttaataaaa gaggtgttga tgccggtgcc gagcgagccg taggtgcgcg
     7021 tgaacgtccc tatgccgccg aaggccgcgt ccgtgatgtt cacgccgtcg gcgatgtaga
     7081 ggttgtcgag cgccgagccg cccgcgatgg acgggttatc gcgcccgccg ttaatcgagt
     7141 ctgaagcgcc cggcgaaagg tagaagaggc tcgagacgct gcgctgcacg ggcacgttgt
     7201 tgaagagctg gtcgctcagg ttctgcccga cggccgtgct cgaaaggtct gccgccgcgg
     7261 cgtccgtgac ggtcacgacc tcggagacct ggcccggctc gagcttcagg ctgatggttg
     7321 actcgcgccc cacgttgacc tgaacgttct cgacgttcgc ggccttgaag ccggaaagct
     7381 ccaccctgac cgcgtactgg cccggcgtga ggttgtcaac cttgtagagc ccctcttcgt
     7441 tggtcgtcgc ggtgcgcggc gcgccgagag aggcgcccgt gacggtgacg atcgccgaag
     7501 ggactgccgc cccgttcacg tccgttatcg tcccgcctat cgagcccgtc gttgacctgt
     7561 cctgcgcgcg ggcggcgccc agagtggcgc agagcgtcgc ggcgagcagg aaagctttaa
     7621 aaatcgaggc tccccggcgt cgtaaatcta aactttcggt tttcactttc tactcctttg
     7681 tgaaagaaaa tcctccccgt tgaatcgagc ctaaagggct ggtttcaggc tccttacagg
     7741 cttgaagaca agcgagccga aggatgggca aaggggatgc cgggtgcgcc cggcgctgag
     7801 tttggccggg aatcgagggg gtgcaatggc gggcgtgcct cccgagcatc cgaatcccca
     7861 aattttgcgg ccccgattta tccaaattcc taaagcctct cgcgggcgca aacctttgag
     7921 ccggatgagt ttatgtattt ttatacgagc gcttgaagcg agcttcacag ggggcgggtc
     7981 agcgtgcgcc gggcgtgtac aaggcggtgg atggggacgg aggagcgggg ctgagggcgg
     8041 ggtttagggc ttattcaaaa atttgaagcc aacttcaaaa attcggtctg taaacgtgaa
     8101 ttagtagcag gcgggggcgg tgcggggcag cgcgacttgg cttgtaaaat gttccatgcc
     8161 tttaacttac aattcaaaaa actgggcacg ccggccggtg gcctttgagt tgcattaggg
     8221 aagcaacggc aattcctaga agccaaacag tcaataaaca caaaaacttg gcgccttaag
     8281 gccagctaag tacaacgaaa ggaataagca tgagaactcc catacgaatc tttacggtgt
     8341 ttgcgttgct gctctcgctc gtggtgggcg cggcggcgca aacgaccacg acgggttcga
     8401 ttgaggggac ggtggttgac gtcaacggcg ccgcggtgcc gggcgtcgtc gtgaccgcga
     8461 cgcgcgccgg cggccgctcg cagaccgcga cgaccaacga cgaaggcatc taccgtctgt
     8521 ccaaccttga gccgggccgc tatacggtca cggtcgaggc agccaaaggc ttcggtcgct
     8581 tcgagcaggc cgacatcgag gtcaacctcg gtagaacttc gaacttaacg gtcagcctgc
     8641 gcccgcaggg cgccgccgag accgtcgagg tcacggccag ctcgggcgcg gccgttgacg
     8701 tgactaccaa cacgactggc acgaacgtct cgaccgagca gttctcgaac ttcccgacgc
     8761 agcgcaccgt gcagtcgctc tacacgatcg cgccgaccgt ctcgcgctcg ggccttcgcg
     8821 acgcctcggg ccgcgaccgc gacccgtcgg tggcgggctc ctcgggcccc gagaacaact
     8881 acatcctcga cggcgtgcag gtgaccgacc cggccttcgg cggctcgggc gcgaacctcc
     8941 ccttcgagtt cgtccaggag atcgagatca agacgggcgc ctacggcgcc gacatcggca
     9001 agtccacggg cggcgtcttc aacgtcatca ccaagtccgg caccaacgag ttccgcggcg
     9061 acgtgttcgg ctacttcacg acgaagggcc ttgtgcgcga ggtcaagagc tcggccatcc
     9121 ccttcacggg ctcggcgccg aacggcttct ccgaagtcga cgccggcttc gacatcggcg
     9181 gccccatcgt caaggacaag ctctggttct tcggcgcctt caacccgcag cgccgcgaga
     9241 acttcttcct gacgcagacc ttccaggacg aggtcaacaa cgagataaag acgccgttct
     9301 acgccgggaa gattacctgg ggcatcaacc agagccacac gttcaccttc tcgaccttcg
     9361 gcgacttcac gacgcaggag ggcttcctgt tcggccagag cggcttcggc gccagcgagc
     9421 tgccgttccg cggcaagacc gagacgggcg gctccaacta cgccttccgc ctgaactcga
     9481 ccttcacgcc gaacttcatc ggcgagttct ccgccggcct gcacttgcag cgcgccaaca
     9541 cgatcccgga ggacgccgac cgcagcctga tcaccgaccg cttcgccgtg ctgcgcaacg
     9601 gcgcggtgct caccccggtc gagaccaacg tcacgctctc gaacggcctg cgcgccgcgt
     9661 tcgtcaacgg caccggcggc accatccagc gcaacttcgt gcgccagggc ttcggcctgc
     9721 agtccgacca ggaccgcaac cgctacgaga tcggcgcgcg catgcagaac atctggggca
     9781 agcacacgtt caagtacggc ttcgaggcca accagaacat ctaccggatt aacaccctct
     9841 cgaccgggcc ggagctgacc ttcacgggcg acccgagcct gccgccgctg ctctcgcgca
     9901 tcgagaaccg cttcgcggtc ttccgcgtcg aaggcagcac gctcatcgtc cccgacgaga
     9961 cgcgccgcgc gcgcgcccag caggtgctcg acgagggcgg gttcgccggc cagggcatca
    10021 cgagcgtcgc catcggcacg gtcagcctga ccaacctcgt caacccgttc ctgttcctcg
    10081 acgtggttcg cgtccgcgac ttccggctca acaccggcga cgatcagacg acgacctccg
    10141 tccagagctt ctacttccag gacgactgga agctgacgcg caacctccag ctcaacctcg
    10201 gcctgcgctg ggacttccag caggccaagt cgattgaggg cgccgagggc gtcaactact
    10261 tcaacctgaa cgacttcaag agcaacacgc agccgcgcct cggcttcatc tgggacttca
    10321 cgggtgaggg ccgcggcaag gtgttcgcca actacgcgcg cttcctcgag acgccgatcc
    10381 cgctcgacat caacgtccgc gcctcgggca acaacattca gacggactgg aacatcaacg
    10441 tcagccgcct gaacgcgccc tccggctcgg ccgtgctgct caacttcggc aacctcggca
    10501 accacccgac gccgaccgac cccggcatca agccgcagac ggttgatgag tacactgccg
    10561 gcatcgagtg gggcccggcc aacatgcgcg acctctcgtt cggcttccgc ggcatctacc
    10621 gcgcgcagga cgaggtcatc gaggacggct cgttcgacga cggcggccac tacttcctct
    10681 tcaacccggg ccgccgcggt tcggacggcg aagtgacgac ggaagacctg gcctgtagcg
    10741 acccggccat cggttgcttt ggcccggccc gccgctacta ccgcgcgctc gagttcacgg
    10801 ccacgaagcg cttctcgaac aactaccagt tcatcgcttc ctacgtcttc tcgagcctga
    10861 tcggcaacta cgagggcctg ttccgcaacg acaacgggca gtccgacccg aacatcactt
    10921 cgctgttcga cctcgtcagc ctgctcaacg gcatctacgg ccggctcccg aacgaccgcc
    10981 cgcaccagtt caagttcgac ggcagctacc gctggccgtt cgggctgctg acgagcgcct
    11041 cgttccgcgc ccagtcgggc ataccgttca acgcgctcat cccgcacccg ctctacggcg
    11101 acaacgaggg cttcgcggtc ccgcgcggca cggcggtcaa cccgataacg ggcaaaaccc
    11161 gcacgccgac gacctacaac ctcgacctcg gcgcctacta cccgatccag ttcggcgaga
    11221 accgccagct ccggttccag ctcgactggt tcaacgtgac gaacgctcag cgcgccatcc
    11281 gccaggacga gacgctccgc atcaacagcg gcgcgcccgg cgtggcggcg gtgccgaacc
    11341 cgttctacgg caacgggacg atcttccagt tcccgtcggc gctccgcctg ggcgtcaagt
    11401 tccagttcta aactgattcc ttcacccgcc cccgggcgcg tgaaaggctc gaaggggggg
    11461 gcgtcaagat tcgcgcccct cccctttctt ttttgtgcta ttcttcccct cgcccgaatc
    11521 ctccatacaa acgcatgtct cccagactgg cacgcaccgt tcggaagggg tagttctcat
    11581 gttattgcga aaggctcgcg ccctgacgag ggcgttctgg ccgtaccttt cggccccgct
    11641 cctcgccctc ctagcttcgg ccgccgccgc cactactgcc ccggcccagg tcggcggcat
    11701 tgacccgtcg gggacgggcg gcaggcactc cgtgcagggg cgcctgatgt cgcccgccgg
    11761 cacgcgcacc gacctgcgcc tgaaggtgag gctggagagc acgggcttcg gcgacctctg
    11821 ggtctactcg gatgcgaatg ggtacttcaa gttccagtcg ctcaaggccg gcacctatac
    11881 catcatcatc gaaggcggcg actacttcga gacgcacagg gagaacgtgt tcatcgagcc
    11941 ggggaacgtc tcctccaggc gcggcaccgc cggcgtcccc atctcgcgcc ccatcacgct
    12001 acagatttac ctgcggccga agcgggacga ggcgctcgcc aacctcgcca ggcccggagt
    12061 catcaacgcc gcgctcgcct ccgtccccaa gccggcggcc gacctctacc agaaggccct
    12121 cgccgccgag cgcaggggcg acaactccaa ggccatagag cacctgaagg cgaccgtcca
    12181 gctccacccg gacttcccgc tggccctgag caagctcggc gtgctctacc tggtggagaa
    12241 gcagcccgag aaggccgcgg attccctgcg ctcggccctt aaactgatgc ccgacgacta
    12301 cgtgacgctc ctctcctacg gccgcgccct cttcgaccgc gcgcagttcg ccgaggccga
    12361 ggagcagttc cgcaaggccg cccggaagaa caacgcctcg ccctcggccc acttctacat
    12421 agggctcatc atgctcaagc gccgcgacct ggacggcgcc gagcagcagc tcaggaaggc
    12481 cgtcgagctc ggcggcaacc agatcgcaat cgcccactac tacctgggcg ggatttactg
    12541 ggacaggcgc gcctacgcgc gggccgccga cgagctcgaa acctaccttc ggctaacccc
    12601 cgaggcccag gacgccccgc gcatacgcgc caccatcaag gagctgcgcg gtaagaagta
    12661 gcccgaccgg aaaccaaatt tccgtattca atccaaaaaa ttggactaaa atttccgtcc
    12721 cctgcccccg gcccgccggc taatttccgc cgccgcaagg gctttacgca ctcgcccgcc
    12781 gcccgcgcca ctcggcacaa attttgcgaa cctctgagcc ggtaacttct caaacgtggt
    12841 agggcgagca ccgcgagtgc ttctttcgcc cgccacccta aacaaaacgc gccgtgacag
    12901 ctcgtgcccg cgccgcctct aggagggagt agagtgaggc acacggaaca ttcttcggtc
    12961 acaagcccgg acggcgcacc cgcccgcctt ctacacagac gtaacggagg agaagcctta
    13021 tgctcagacg gattttcgac cccagagttt ggccggtgct cgccctggcc gccttcgcct
    13081 tcctgtccgc cgccgcgccc gcgcacgcgc aactgacgcg cggctccatc tctggcaccg
    13141 tgcgcgacga gtcgggcgcg gtcgtccccg gcgccgaggt cagaatactc gaccccagga
    13201 cgaacacgtc gcgtagcgcg acgaccgacg acaacggcta ctaccgcgtc ggcgcgctcg
    13261 accccggcag ctacagcgtc atcgtggagc gcgcgggctt cgcgaaggtc gagaaccgcg
    13321 aggtggtcgt gcaggccgcg ctcgacacga ccttcgacgt cgccctcaag gtcggcaacg
    13381 tcaccgaggt cgtcaacgtc acgacgcagt ccgagggcat cgcgctcaac aagacgaacc
    13441 cgaccatcgg cctgagcgtc ggcaaggagt tgatcgttga cctgccgctc tcggccgccc
    13501 gcgacgtgaa ccagctagcc cttctctcgc ccaacgcctt ccccgcgccg ggctcctccg
    13561 gcatatccgt caacggccag agggcgcgca acaacaactt cacaattgac ggcacggaca
    13621 acaacgacat aagcgtcacc atcccgacct cggaaatctt ccccgaggcc gtcggcgagt
    13681 tccaggtctt gacgaacgcc tactcggccg agttcgggcg aaactcgggc gcgcagataa
    13741 acgtcatcac gcgctcgggc ggcaacgact tccacggcga cgtgttccac ttctaccgcg
    13801 gcgcgaagct caacgcgctg tccaacatcg agaagcaggc gggcctgacg cgcccgaccc
    13861 agttcgtccg caaccagttc ggcttcgccg tcggcggccc gctgcacctg ccgcgcttcg
    13921 gcgagggagg ccccgcgata atcagcggca gggacaggac gttcttcttc gtcggcttcc
    13981 aggaagacct catacgccag agcgtgctgg gcggcacggt caggataccg acgcccgccg
    14041 gcttcgccgc gctccagggc gtgccgctgc ggcccgcgac ctcgacgcgg cccgcgcagt
    14101 ccgcggcgag ccgcgcggcc gtcctcagct cgctctcctt cctcaaccag gtctaccaga
    14161 acaacccggt cttcaccagc gtcaacacga cggccgccgt aatcaacggc gtccccatcg
    14221 agaccggcaa cgtccgcctg acgcgcccgc gcgacgacga cggcttcaac tacatcatgc
    14281 ggttcgacca caagttgacc gagaacgaca acctcacgtt ccgctactcg cgcgacgcct
    14341 cctacagcag caacctcacg agcaacacga ccttcggccc catcttctcg gcgcgccagg
    14401 acatcattga ccagaacatg gccctgagcc tgacgcacgt cttcggcccg cgggtgctca
    14461 acgagttccg cggctcctac gtccgccgca acctcgcctt ccccgagaac gaccccacga
    14521 cgcccacgac caccatcacg ggcttcttca ccatcggcgg gctgtcgaac ttcccgcagg
    14581 ggcgcataca gaacagctac cagttccagg acatcgtgag cgtgctgatg gggcgccacg
    14641 ccatgaagat aggggccgac atccgccaca tacacctctt caaccaggcg gccttcgaca
    14701 ccaaaggcac cttcgccttc tcgaacttcg ccaacttcgt caacaacata ggcacctcct
    14761 accagcaggc gctacaggta gcctccttcg acgcccgcca gtggcagcag tattacttct
    14821 tccaggacga ctggcgcgtc acgcccaact tcaccctcaa cctcggcctg cgctacgaga
    14881 cctcgaacaa cccgttcggc ttcttcggag cgcgcgacac cgagtcgctg aacgcgctcg
    14941 tccccggccc cgtcccgcgc gacacgaaca actgggcgcc ggtcataggc ttcaactaca
    15001 gcccgaggtt cgagggcgac ggcctcctcg cgcgcttctt cggcgacggc cgcacggcca
    15061 tacgcggcgg ttaccgcgtc aactacgacg tgctcttcta caacatcctg accgtcaacg
    15121 cgtcgaacta cccgcgcgtc gtcgtgccgc gccaggacaa cccggttgac ctcttcccgt
    15181 cggtcacgcc gctctccggc tcggccgtct tcaacccgct cgccacctac gtcaacacgc
    15241 ccgaggactc cgtcacgcct tacgcccaca tctacagcct gagcgtgcag cgcgagttcg
    15301 ggcgcaacta cgtgctcgag gtcggctaca gcggcagcgc ctcgcgcgcg cagatcaacc
    15361 agctacaggc caataacgcg acgctcagcg cggcgcaggc ggcgaccgtc atcgccacgg
    15421 gcgacccgct ctcgataccg accgtgcagc agcgccgcca gttcccgcag ttcggcccgc
    15481 gcgtgctgat agcgacgacg gcagaggcca actacaacgc cggcttcgcc tccttcaacc
    15541 gcaggctcgg cggcgagggc ttcatgcgca acttccagtt cagcgccgcc tacaccttca
    15601 gcaagctgat gagcaacaac gacgagtcgc tcggcgtcgc cgacatcacc gccggctcgc
    15661 ctcagatacc gcaggacttc accaacattg acgccgagtg gagcgtctcg gccttcgacc
    15721 gcacgcaccg cctcgtcgtc agctacctct acgagacgcc cacgcccggc ttcgcgaagg
    15781 gcaacgcgct ccgccacctc ttcggcgggt ggcagatcac aggctcgacc gccggcacgt
    15841 cgggccagcc cttctcgatc ctcaccggcg ttgacacgaa cggcaacggc gcgggcggcg
    15901 accgcccgaa cgtcaatccg aacgcgccgc tcacccccga ccccgacacg gggaacctcc
    15961 gcaccttcac cgcgccgggc cgctacctcg tcccgcgcaa cgcttcgggc gcgatactca
    16021 ccttcagcat gccgaacggc ggcggcaacc tcggcaggaa caccctgcgc gccccggcct
    16081 tctggaacac caacctcggc atccagaagc gcttctacct cggcgaggtc acgcgcttcg
    16141 ccattcgcgc cgacctgctg aacgccttca accaggacaa cttcggcatc ccggtcaaca
    16201 gcctcagcag cgccgacttc ggcaagaacc tcaacaactt tggcaaccgc tccatcaccg
    16261 tgggctggaa gttcaccttc tagcctgcgg cccgcacgga aaggggggcg gccttcgtcg
    16321 ggccgccccc ctttactttt cgcgcgtcgg aaacttgtag ggggccggcc gaccgcctgt
    16381 ggtagaatcc gctgccccag aagaggtatt taatgatgag cacagcccga tctttccttc
    16441 gccccctttc agcccgacta ctcctcgcgc cgctcggcgc cctcctcctt ctctcgcccc
    16501 tggcggcccc ggcgcgcgcc caacgcgcta cgcgcgactt gcgcgggtcg gggggcgtgc
    16561 aggtcaacgt caagagtttc gaccagcggg acgcaatcac cggcgcggag gtctcgctgg
    16621 tggccgcggg ccgggggga
//
LOCUS       DASPKR010000734         3874 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1413939, whole genome shotgun sequence.
ACCESSION   DASPKR010000734 DASPKR010000000
VERSION     DASPKR010000734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3874)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3874
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1413939"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..420)
                     /locus_tag="VD968_19210"
     CDS             complement(<1..420)
                     /locus_tag="VD968_19210"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012549.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HYE16576.1"
                     /translation="MSQDIEREKEVAPAARRATYPLPPAELVSALRAEHEGWFTDSVE
                     AFGELTLIVPREHIAEVCAHLKTAPGFEFDMLADLCGADRGPEEEPRFEVNYHLFSTK
                     RYHRMRLKVLLNQEDTHVPTVTTVWRTANWHERETFDM"
     gene            complement(498..1133)
                     /locus_tag="VD968_19215"
     CDS             complement(498..1133)
                     /locus_tag="VD968_19215"
                     /inference="COORDINATES: protein motif:HMM:NF005012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HYE16577.1"
                     /translation="MGLDNVIAEALPDIITTRLDALVNWARKSSLWPATFGLACCAIE
                     MMATTDSRHDLARFGSEVFRASPRQADVMIVSGRVSRKMAPVLRRIYDQMPEPKWVIS
                     MGACATSGGVFDNYAIVQGVDKIVPVDVYIPRCPPRPEMLIHAVMMLQDKVMKESLRD
                     RKDVPPSEAVEAVPPGTLPATGVSATNEAAAQEYPSRPYTIASRHERRRSS"
     gene            complement(1153..1641)
                     /gene="ndhC"
                     /locus_tag="VD968_19220"
     CDS             complement(1153..1641)
                     /gene="ndhC"
                     /locus_tag="VD968_19220"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: protein motif:HMM:NF012717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HYE16578.1"
                     /translation="MFSLSDYLPILLMLLVAGGFAVGNVLLSQFVGQRKATRTKTMPY
                     ECGKDPVGSARERFSVKFYLVAMIFILFDIELIFLMPWAVVFRKLTGEGLGTLVYVEM
                     MIFVALLLVGYVYILKKGMFEWGERARAEAEAEGRALAKAEARQRRGRTAGSTGVPAR
                     AA"
     gene            1898..2785
                     /locus_tag="VD968_19225"
     CDS             1898..2785
                     /locus_tag="VD968_19225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16579.1"
                     /translation="MITGFNTDIEHGGTTYHVQTEDKGLDSPLILSLVYVGGAIIASK
                     RTHYEDLIESGFDEKKLAERLQRQHKLICAAIRSGRVEELKKMGGEPRGADGRKKGSK
                     KAQPDIVEEPAPAPPPLIFEAEAETVGAPALVAPLDIEIERDAHSWFASMPQPTAPAP
                     PAPPPAAEEPAVEALYDDAVEILEPEIIIEDEASEELYLTLLDDDGEFRAGQLATIRI
                     HVGRGQYGQRPVAAANITVKVLGTSFRPLIVTTKTDEEGLAVVRALLPRFTSGRAAII
                     IRAADGEDVAEMRRIIQQA"
     gene            complement(2769..2981)
                     /locus_tag="VD968_19230"
     CDS             complement(2769..2981)
                     /locus_tag="VD968_19230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16580.1"
                     /translation="MDDLDAVALAEPPCGPVRTAHYLEIQLDGQPLGREPERLDQGMK
                     RRALLNLPRLSVDLDRQKASPLKPAG"
     gene            3105..>3874
                     /locus_tag="VD968_19235"
     CDS             3105..>3874
                     /locus_tag="VD968_19235"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF017501.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HYE16581.1"
                     /translation="MSTATQTHAETFQVGGRAFASRLIVGTGKYRSHEEMKAAHRASG
                     AEMVTVAVRRVPLDRKTESFLDHLDPRMTILPNTAGCYTAEEAVRTARLAREALQTDL
                     VKLEVIGDQTTLFPDNEQTLEAARVLVREGFTVLPYFTDDLIMAKKLLDAGCAAVMPL
                     AAPIGSGLGVQNPANLRIMREQLPDALIIVDAGVGTASDAAVAMELGADAVLMNTAIA
                     EAKDPERMAKAMRLAVEAGRLAYLAGRMPKRLYASASSP"
BASE COUNT          709 a         1267 c         1275 g          623 t
ORIGIN      
        1 catgtcgaag gtctcgcgct cgtgccagtt ggccgtgcgc cagacggtcg tgacggtcgg
       61 gacgtgcgtg tcctcctgat tgaggaggac tttcaggcgc atgcggtggt agcgcttggt
      121 cgagaagagg tggtagttga cctcgaagcg gggctcctcc tctgggcctc ggtcggcgcc
      181 gcagaggtct gcgagcatgt cgaactcgaa tccgggcgcg gtctttaggt gggcgcagac
      241 ttcggcgatg tgctcgcgcg ggactatgag cgtcagctcg ccgaacgcct cgaccgagtc
      301 ggtgaaccag ccctcgtgct cggcgcgcag ggcagagacc agctcggccg gcggcaacgg
      361 gtaagtcgcc cgcctcgccg cgggcgcaac ttccttctcg cgctcgatgt cctgtgacat
      421 aaaagaagct ttcagcaatc agctttcagc aatcagctat aagtcagcaa ccgatgttga
      481 gctgactgcc gaaagcttta tgacgaacgg cggcgctcgt ggcgcgaagc tatcgtgtag
      541 gggcgcgaag ggtattcctg ggccgcggcc tcgttcgtgg ccgagacgcc cgttgcgggg
      601 agcgtccccg gcggcacggc ctcgacagcc tcggaggggg ggacgtcttt gcggtcgcgc
      661 agcgactcct tcatcacctt gtcctggagc atcatcaccg cgtggatgag catctcgggg
      721 cgcggggggc agcgcgggat gtaaacgtcc acggggacga tcttgtcaac gccctggacg
      781 atggcgtagt tgtcgaagac gccgcccgag gtggcgcacg cgcccatcga gatgacccac
      841 ttcggctcgg gcatctggtc gtagatgcgc cgcagcaccg gcgccatctt cctcgacacg
      901 cggcccgaga cgatcatcac gtcggcctgc cgggggctcg cgcggaagac ctcggagccg
      961 aagcgcgcga ggtcgtggcg cgagtccgtc gtagccatca tctcaatcgc gcagcaggcc
     1021 agcccgaacg tcgccggcca gagcgaagac ttgcgcgccc agttcacgag cgcgtcgagc
     1081 ctcgtggtta tgatgtcggg cagcgcctcg gcgatgacgt tgtctaagcc cataaagcct
     1141 ccctcacggc cctcacgcgg cccgcgcagg cacgcccgtc gagccggccg tccggcctct
     1201 gcgctgccgc gcctcggctt tggcgagcgc gcgcccctcg gcctcggcct cggcgcgggc
     1261 ccgctcgccc cactcgaaca tgcccttctt cagaatatag acgtagccga cgagcagcag
     1321 cgccacgaag atcatcatct cgacatagac gagcgtgccg agcccctcgc ccgtcagctt
     1381 cctgaagacg acggcccagg gcatcaggaa tatcagctcg atgtcgaaga gtatgaagat
     1441 catcgcgacg aggtagaact tcacggagaa gcgctcgcgc gcagagccca cggggtcttt
     1501 gccgcactca tagggcatcg tcttcgtgcg cgttgccttg cgctggccga cgaactgcga
     1561 gagcagcacg ttgccgacgg cgaagccgcc cgcgaccagc agcatcagca agatgggcaa
     1621 gtaatcggac aggctgaaca cacttacctc ccgtcagctt ccgctgaaaa gggcgggcct
     1681 ccgcctcccc cgcgttagtt tgagaatcat ggtacaaagt aatcctagtc cagactgcca
     1741 ggggtgtcaa ggctcgcccg ccgggccgga aagccccgtt ttgcaaggag attgaccgac
     1801 ttcagcccag cgtgctactg tgaatttgcc ccctgccgag gaggccattc ttcctcggcc
     1861 acgccacccg ctagaagctc cctatcggca ctctcaggtg attacagggt tcaatacaga
     1921 cattgagcac ggcggcacta cgtaccacgt ccagaccgag gacaagggat tggattcgcc
     1981 gctgatactc tcgctcgtct atgtcggcgg ggccatcatc gccagcaagc gcacgcacta
     2041 cgaagacctc attgaatccg ggttcgacga gaaaaagctt gccgagaggt tacagcgcca
     2101 gcacaagctc atctgcgccg ccatacgctc gggccgcgtc gaagagctta aaaaaatggg
     2161 aggcgagccg cgcggcgccg acggcaggaa gaagggctcg aagaaggcgc agcccgacat
     2221 cgttgaggag ccggcccccg cgccgcctcc cctcatcttc gaggcggagg ccgagacagt
     2281 cggcgcaccg gccctggtcg cgcccctcga cattgagata gagagggacg cgcacagttg
     2341 gttcgcctcg atgccgcagc cgacggcgcc tgccccaccc gccccgccgc ctgcagcgga
     2401 ggagccggcg gtcgaggcgc tctacgacga cgccgtagag attctcgagc ccgagataat
     2461 catagaggac gaggcgtccg aagagcttta cctgactctg ctcgacgacg acggcgagtt
     2521 ccgcgccggg cagctcgcga ccataagaat tcacgtcggg cgcgggcagt acgggcagag
     2581 gcccgtggcg gcggcgaaca tcaccgtcaa ggtgctcggc acctccttcc gcccgctcat
     2641 cgtcacgaca aagacggacg aagaagggct cgccgtggtg cgtgcgctgc ttccgcgctt
     2701 cacatccggg cgcgccgcca tcatcatacg ggccgcggac ggcgaagacg tggccgagat
     2761 gcgacgcatc atccagcagg cttaaggggg gatgctttct gacgatcaag gtcaacggag
     2821 aggcgcggga ggttgaggag ggcgcgacgc ttcattccct ggtcgaggcg ctcgggctcg
     2881 cgcccgagcg gctggccgtc gagctgaatt tcgaggtagt gcgccgtgcg gactggcccg
     2941 cacggcggct ccgcgagggc gacagcgtcg agatcgtcca cttcgtcggt ggcggccgcg
     3001 gggccgacgg gtgaagagcc tcggggattt ctctttgcgc gccgtcgggt gtaaattcga
     3061 tgtgcgccgg aacgcaatca tccttgaaag agaaatcatc ccgaatgtca acggcaactc
     3121 agactcacgc agaaaccttc caggtaggcg gccgcgcctt cgcgtcgcgc ctcatcgtcg
     3181 gtactgggaa gtaccgcagc catgaagaga tgaaggccgc gcaccgtgcc tcgggcgccg
     3241 agatggtgac ggtagcggtg cgccgcgtcc cgctcgaccg caagaccgag tccttcctcg
     3301 accacctcga cccgcgcatg actatcctgc cgaacacggc cgggtgctac acggccgagg
     3361 aggcggtgag gactgcgcgg ctcgcccgcg aggctttgca gaccgacctc gtcaagctcg
     3421 aagtcatagg cgaccagacg acgctcttcc ccgacaacga gcagacgctt gaggccgcgc
     3481 gcgtgctggt gcgcgagggc ttcactgtgc tgccctattt cactgacgac ctcatcatgg
     3541 cgaagaagct gctcgacgct ggatgcgcgg ccgtgatgcc cctggccgcg cccataggct
     3601 ctggcctcgg cgtgcagaac ccagcgaacc tgcgcatcat gcgcgagcag ttgcccgacg
     3661 cgctcatcat cgttgacgct ggcgtaggca ccgcgagcga cgcggccgtg gcgatggaac
     3721 tcggcgccga cgccgtgctg atgaacacgg ccatcgccga ggccaaagac cccgagcgga
     3781 tggctaaggc catgcgcctc gcggtcgagg ccgggaggct cgcgtacctc gcgggccgta
     3841 tgccgaagcg gctctacgcg agcgcgtcga gccc
//
LOCUS       DASPKR010000735         5580 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1936073, whole genome shotgun sequence.
ACCESSION   DASPKR010000735 DASPKR010000000
VERSION     DASPKR010000735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5580)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5580
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1936073"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..306)
                     /locus_tag="VD968_19240"
     CDS             complement(<1..306)
                     /locus_tag="VD968_19240"
                     /inference="COORDINATES: protein motif:HMM:NF015758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG nucleotide pyrophosphohydrolase
                     domain-containing protein"
                     /protein_id="HYE16582.1"
                     /translation="MPKTFDDLVALMRRLRSPDGCPWDREQTYATLAPMLLEEAYEAF
                     EAVEAAREGRPAELRAELGDLLFQIIFYAQVASERGEFTIDDVTGQIHAKMVRRHPHV
                     "
     gene            609..>5580
                     /locus_tag="VD968_19245"
     CDS             609..>5580
                     /locus_tag="VD968_19245"
                     /inference="COORDINATES: protein motif:HMM:NF013955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HYE16583.1"
                     /translation="MSQIHYSLSSRLFLRLVLVGAFSLAAALWWAGKVGHSAAPVAAA
                     APQITSLSAAAATRSGRLLINGTGFGATQSGGRVEIGGVKAHVSRWSDTLISAYVAEA
                     TPTGSASVQVFSGGGASNTAPLEVTVRPAAADRIKWRFTMDADYAVTRPALGADGTIY
                     VNDVSGALYALTPNGALKWIYRAGLRGGYGPVTVGGDGTIYVASLVDKPDGTLGSVGA
                     IHAVRPDGTEKWVFNQTNGMIVAGPNVGPDGNIYAVTEYGIGLFALSPAGNLLYQRGR
                     FFEDPPSVWGQEIVFGPAAMYFGFDGQSKLHSYSLGGDWRWSVPALAAGVGASFQAAV
                     GPNGNIHVSTPSGTLTAYDPQGRQVWNFNESPNNLISAPFVGPDNAAYMVRNGGVLHA
                     LNPTGTTKWRFSEGTQLYDPAASPANDLVFMGGRNSNSGLSFFQAVSTADGQSLWKVL
                     LAHEPGFGDYGQILPVSRPLFSADGQTAYIASDILGGGSTNAYSYFYAVGTAPDGTVP
                     NTAPSVRMTGPVQRESFPHLSDITMTADASDAEGHVAKVEFYLSGRGTAKLVGTDTTA
                     PYSAVAEDVPGDNYALYAVAYDDKGLKTQSDLRYIYVSYWPPTAELTSPANGGWFPAG
                     SDVTLTAQADLRDGRISKMEFLKLTPNAEIICTVTAPPYTCVWRGVPAGVHTVFVRTF
                     DEGTQYFNSERVTFAAGDGHTARHQIGGRASEPDGKPIAGATVWLERYGRKQPMTFTT
                     TTTDANGRFNFAGLEPNYSYDVDAYHPEFSIGMVPVNGLQGLVADVAVEMIGGRPEPR
                     PAGGPPVAWASYYGSPEGSLDGVTLLALDGQGNTLVTGLTGWNFSVVKYDPAGRRLWA
                     RVFDGGGRYQATVYDIAADAAGNVFVTGAYWGGTAQERNWVTIKYDAAGNELWRRTYD
                     GPLSMTEYPCALEVDAAGNLYVVGEGGDAFDGGRSVTTIKYDPAGNVLWKRDEVGRYA
                     KDVKLDAAGNAYVAGVSGGRVSVFKYDPNGNLLWRYAHSTGAADERADTMSLHLAGDG
                     GVYVLADISDTSSPSASGYEPAVLKVNGADGQFRWVSHLSRKDGQRLSIATYAMDVDP
                     AGNSYVTGIQKYNTDANVDAFTMKVGAADGAVQWMSLYAEPAGGGYASRWNADNNIAV
                     DAQGNAYAYFTSQRADDDDVAVVKYRTDGTREWVHLFDNPHHTGDSSNYLFGNGRNIL
                     VDARGDIYFTGDSQVPGHSLDFVTVKLAVSSAGATPTPTPTPTPAPVTHAVTGKVTID
                     GSPAPGVNVALGGDQTATAQTDAEGNYSFAGLAQHGNYTVTPSLDGYDFTPGMADFTS
                     LTGDSTADFSGTTKVVRPSVGMQYYPLPHPVRLLDTRAGEPACVNPGAPFAAGSTSKI
                     VAQRTCSGLTIPANAESIVGNATVVNNKSKQPGYVTLFRGGTARPTVSSINYAGMQVI
                     SNAFTVGLGEGGTFSAYAHSTTDMIVDVTGYYAPPGAGGLYFHPLPRPARLLDTRIGQ
                     TACDAPGAPVTGGTARTESARVACAGVVIPDDALAIVGNATVVNDSQGSGPGYLTLYP
                     GGAARPVVSNLNYNTGQVLSNAFTAGLGADGTFQIYAHSTTDVIVDVTGYYSASAAPD
                     ANGVAGLSYESLPNAVRLLDTRPGQPTCLSTGAPLAAKVVRAQHAVG"
BASE COUNT          909 a         2054 c         1826 g          791 t
ORIGIN      
        1 gacgtgcggg tggcggcgca ccatcttcgc gtgtatctgg ccggtcacgt cgtcgatggt
       61 gaactcgccg cgctccgagg cgacctgcgc gtagaagatg atctggaaga gcagatcgcc
      121 caactcagcg cgcagttcgg cgggcctccc ttcgcgcgcg gcctcgaccg cctcgaaggc
      181 ctcgtaggct tcttcgagca gcattggggc gagcgtcgcg taggtctgct ccctgtccca
      241 ggggcagccg tcgggcgagc gcagccgccg cataagcgcg acgaggtcgt cgaatgtctt
      301 aggcatgcgc caatcctagc acggaacgcg gcggggccgg ccccggcgcg cgggccgccc
      361 gcacgcaccc gcgggaactg tcgggcgggg cgcaacgcgc gggcggcatt ttgcatctat
      421 atccggatat ctctgtattt tccgggaggc ccggcgcaca gtctaaggcg cgaccgccgg
      481 aagacaggct tcctcacatt ctggggggca atccgttaag cacaaagtaa ggtacacgcc
      541 ggcgcccgga gggcttgcgc gtcggtttag gcggagactt gcgccccgac ttcgacaagg
      601 tggattacat gagtcagata cattactcgc tctcatcaag gctatttctg cgactcgtcc
      661 ttgtcggagc tttctccctc gccgcggccc tctggtgggc aggcaaagtg ggccactccg
      721 ccgcccctgt ggcggccgcg gcgccgcaga tcacttcgct ttcggcggcc gcggcgacgc
      781 gcagcgggcg gctcctcatt aacggcaccg gcttcggcgc gacgcagagc ggcggccgcg
      841 tcgagatcgg aggcgtgaag gcgcacgtct cgcgctggag cgacacgctc atctccgctt
      901 acgtcgcgga ggccaccccg accggcagcg cctccgtgca ggtctttagc ggcggcgggg
      961 ctagcaacac ggcgccgttg gaggtcactg tgcgcccggc cgcggccgac cgcatcaagt
     1021 ggcgcttcac gatggacgcc gactacgccg tcacgcgccc ggcgctcggc gccgacggca
     1081 ccatctacgt caacgacgtc agcggcgccc tctacgcgct cacccccaac ggcgcgctga
     1141 agtggattta ccgcgcgggc ctgcgcggcg gctacggccc cgtcacggtc ggcggggacg
     1201 gcacgatcta cgtcgcctcg ctcgtggaca agccggacgg cacgctcggc agcgtcggcg
     1261 ccatccacgc cgtgcgcccc gacggcacgg agaagtgggt cttcaaccag acgaatggca
     1321 tgatagtcgc cggcccgaac gtcggccccg acggcaatat ctacgccgtc accgaatacg
     1381 gcatcggcct gttcgcgctc tcgcccgccg gcaacctgct ttatcagcgc gggaggttct
     1441 tcgaagaccc cccgtcggtg tggggccagg agatcgtctt cggcccggcc gcgatgtact
     1501 tcgggttcga cgggcaatcg aagcttcact cctacagcct cggcggcgac tggcgctgga
     1561 gcgtcccggc cctcgccgcc ggcgtcggcg cctcgttcca ggccgccgtc ggccctaacg
     1621 ggaacattca cgtcagcacg ccctccggga cactgaccgc ctacgacccg cagggcaggc
     1681 aggtttggaa cttcaacgag tcccccaaca accttatctc ggcccccttt gtcggccccg
     1741 acaacgccgc ctacatggtg cggaacggcg gggtgctgca cgccctgaac cctacgggga
     1801 cgaccaagtg gcgcttctcc gaggggactc agctctacga cccggccgcc agccccgcga
     1861 acgacctggt cttcatgggc gggcgcaact ctaacagcgg tttgagcttt ttccaggccg
     1921 tcagcaccgc cgacggccaa tcgctctgga aggtgctgct ggcgcacgag ccgggcttcg
     1981 gcgactacgg gcagatactc cccgtctcgc gcccgctctt ctcggccgac ggccagacgg
     2041 cttacatcgc atccgacatt ctgggcggcg gctcgaccaa cgcctactca tacttctacg
     2101 ccgtgggcac cgcgccggac ggtaccgtgc ccaacaccgc gccgagcgtc cgcatgaccg
     2161 gccccgtcca gagggagagc ttcccgcacc tctcggacat cacgatgacg gccgacgctt
     2221 cggacgccga aggccacgtc gcgaaggtcg agttctacct cagcgggcgc ggcacggcga
     2281 agctcgtcgg caccgacacg accgcgccct acagcgccgt cgccgaggac gtgcccggcg
     2341 acaactacgc cctctacgcc gtcgcctacg acgacaaggg gctgaagacg cagtccgatt
     2401 tgcgctacat ctacgtcagc tactggccgc cgacggcgga gctgacgagc ccggccaacg
     2461 gcgggtggtt cccggccggg tcggacgtga cgctgaccgc gcaggctgac ctgcgcgacg
     2521 gccgcatctc caagatggag ttcctcaagc tgaccccgaa cgcggaaatt atctgcacgg
     2581 tgacggcgcc gccctacacc tgcgtctggc ggggcgtgcc cgcgggcgtc cacaccgtct
     2641 tcgtgcgcac gttcgacgag ggcacacagt acttcaactc cgagcgcgtc accttcgccg
     2701 ccggcgacgg gcacacggcg cgccaccaga tcggcgggcg cgcttcggag cccgacggca
     2761 aacccatcgc gggcgcgacc gtctggctgg agcgctacgg ccgcaagcag ccgatgacct
     2821 tcaccaccac gacgaccgac gccaacggcc gcttcaactt cgccgggctc gagccgaact
     2881 acagctacga cgttgacgcg taccacccgg agttcagcat cggaatggtg ccggtgaacg
     2941 gccttcaggg tctggtcgcc gacgtggcgg tcgaaatgat cggcgggcgg cccgagccgc
     3001 gcccggcggg cggcccgccc gtcgcctggg cctcctacta cggctcgccc gaggggagcc
     3061 tcgacggcgt cacgctcctc gcgctcgacg gccagggcaa caccctcgtc accggcctga
     3121 cgggctggaa cttctcggtc gtcaagtacg accccgcggg ccggcggctc tgggcgcgcg
     3181 tcttcgacgg cggcgggcgc taccaggcca cggtctatga catcgctgcg gacgcggccg
     3241 gcaacgtctt cgtcacgggc gcgtactggg gcggcacggc gcaagagcgc aactgggtca
     3301 ccatcaagta cgacgcggcc ggcaacgagc tttggcgccg gacttacgac ggccctttga
     3361 gcatgaccga gtacccctgc gccctggagg tggacgcggc gggcaacctc tacgtggtcg
     3421 gcgaaggcgg ggacgcgttc gacggcggcc gctccgtcac gaccatcaag tacgaccccg
     3481 ccggcaacgt cctctggaag cgcgacgagg tcgggaggta tgcgaaggac gtgaagctcg
     3541 acgccgcggg caacgcctac gtcgccggcg tgagcggcgg ccgcgtcagc gtcttcaagt
     3601 acgaccccaa cggcaacctc ctctggcggt acgcccactc gaccggcgcg gccgacgagc
     3661 gggccgatac catgagccta cacctcgcgg gcgacggcgg cgtttacgtc ctcgccgaca
     3721 tctccgacac cagctcgccc tcggcgagcg gctacgagcc ggccgtgctc aaggtcaacg
     3781 gcgcggacgg ccagttcagg tgggtctcgc acctctcgcg caaggacggc cagaggctca
     3841 gcatcgccac ctacgcgatg gacgttgacc ccgcgggcaa ctcttacgtc acgggcatac
     3901 agaagtacaa tacggacgcc aacgtggacg ccttcacgat gaaggtcggc gcggcggacg
     3961 gcgcggtgca gtggatgagc ctctacgccg agccggccgg cggcgggtac gcctcccgct
     4021 ggaacgccga caacaacatc gcggtggacg cccaggggaa cgcctacgcc tacttcacct
     4081 cgcagcgcgc ggacgacgac gacgtggccg tcgtcaagta ccgcacggac gggacgcgcg
     4141 agtgggttca ccttttcgac aacccgcacc acacgggcga ctcgtcgaac tacctgttcg
     4201 gcaacggccg caacatcctg gttgacgcgc gcggcgacat atacttcacc ggcgactccc
     4261 aagtccccgg ccacagcctc gacttcgtca cggtcaagct cgccgtctcg tccgccgggg
     4321 cgaccccgac gcccacacct actccgacgc cggcgcccgt cacccacgcc gtcacgggca
     4381 aggtgacgat agacggctcg cccgccccgg gcgtcaacgt cgcgctcggc ggcgaccaga
     4441 cggccaccgc ccagacggac gccgagggca actactcctt cgcgggcctc gcgcagcacg
     4501 gcaactacac cgtcacgccc tcgttggacg gctacgactt cacgcccggc atggcggact
     4561 tcacctccct gaccggcgac agcaccgccg acttcagcgg cacgaccaag gtcgtgaggc
     4621 cgagcgtggg gatgcagtac tacccgctgc cgcaccccgt ccgcctgctc gatacgcgcg
     4681 cgggcgagcc cgcctgcgtc aaccccggcg cgccgttcgc cgccggctcg acgagcaaga
     4741 tagtcgcgca gcgcacctgc tcgggactga ccatccctgc caacgccgag tccatcgtcg
     4801 gcaacgcgac ggtcgtcaac aacaagagca agcagcccgg ctacgtgacc ctgttccgcg
     4861 gcggcacggc gcggcccacg gtctcgtcca tcaactacgc cgggatgcag gtgatctcga
     4921 acgccttcac cgtgggcctg ggcgagggcg gcaccttcag cgcctacgcg cactcgacga
     4981 ccgacatgat cgtggacgtg acgggctact acgcgccgcc tggcgccggc gggctctact
     5041 tccacccgct gccgcggccc gcgcgcctgc tcgacacgcg catcggccag acggcctgtg
     5101 acgcgcccgg cgcgcccgtc acaggcggca cggcgcgcac ggagtcggcg cgcgtggcgt
     5161 gcgccggcgt cgtcatcccc gacgacgcgc tggccatcgt cggcaacgcg acggtcgtca
     5221 acgactcgca ggggagcggc cccggctacc tgacgctcta ccccggcggc gcggcccgcc
     5281 ccgtggtctc gaacctgaac tacaacacag ggcaggtctt atcgaacgcc ttcaccgccg
     5341 gcctcggcgc ggacggcacc ttccagattt acgcgcactc gacgacggac gtgatcgtgg
     5401 acgtgacggg ctactacagc gccagcgcgg cgccggacgc taacggcgtc gcaggcctca
     5461 gctacgagtc tctgccgaac gcggtgcggc tgctcgacac gaggccgggc cagccgacgt
     5521 gcctgagcac cggcgcgccg ctcgcggcga aggtcgtcag ggcgcagcac gccgtcggcc
//
LOCUS       DASPKR010000736         2653 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1936550, whole genome shotgun sequence.
ACCESSION   DASPKR010000736 DASPKR010000000
VERSION     DASPKR010000736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2653)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2653
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1936550"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2485
                     /gene="hrpB"
                     /locus_tag="VD968_19250"
     CDS             <1..2485
                     /gene="hrpB"
                     /locus_tag="VD968_19250"
                     /inference="COORDINATES: protein motif:HMM:TIGR01970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HYE16584.1"
                     /translation="GGGDVLVLEPRRIAARMAARRVAEERGERVGESVGYHVRFEEVA
                     GPRTRLRFLTEGVLTRRMLRDPELRGVGCVVLDEFHERHLQADTALALLKRLRRTSRP
                     DLKIVAMSATLDAAPLARYLEDCPRLRSEGRLFEVAVEHLARHDDRPLELQVEAAVRR
                     LVVEGLDGDVLVFLPGAAAIRRAQAACAAVAAEADLLVLPLHGELPAAEQDRAVAKAD
                     RRKLILSTNVAETSLTIEGVAAVVDSGLARVAGHSPWSGLPVLRVARVSQASAIQRAG
                     RAGRTREGRALRLYTRQDFAARPASETPEVRRLDLAETVLELRAAGVADPRELDWYEA
                     PSPDALEAAEVLLRRLGAVSAGGELTETGRRMLRFPVHPRLARILAEAESRGVGAQAC
                     AVAALISERDIRAGRVRLGTPSDAATAPARREAAKHSDSDLLELLDLFAEAEARNFSP
                     EHARRAGLDWNALRAAERVRNQLLRLLGGGKESKTKGTPVKPSDEAETQLLVSILAGY
                     PDRVARRRGPGERGSGAELLLAGGGSARLAPESVVRASEFVVAVDAEERTGDAGAGAG
                     RASQRGTVVRLASAVEPDWLLDLFADALSEKTEARWNAQAERVEVVRRLVYDSLVLEE
                     WRAKGAEGGPEVTRALAEAALGAGPYAFADREDVERLLARVEFVARTFPEANLPELGE
                     EDVLAALASMCEGRRSFAELREAARRGELLEHLRARLTPEQSRLLATMAPERVALASG
                     RQARVQYEPGQSPYVASRLQDFFRMREAPRIAAGRAPLVLHLLAPSQRPVQVTSDLAG
                     FWSRHYPRVRRELGRRYPRHAWPEDPLNP"
BASE COUNT          356 a          959 c          954 g          384 t
ORIGIN      
        1 gggcgggggc gacgtgctgg tgctcgaacc gcgcaggatc gccgcgcgca tggccgcccg
       61 gcgcgtggcc gaggagcgcg gcgagcgcgt gggcgagtcg gtcgggtacc atgtgcgctt
      121 cgaggaggtc gcggggccgc gcactcggtt gcgttttttg acagaaggtg tgctgacgcg
      181 acggatgctg cgcgacccgg agcttcgcgg cgtcggctgt gtcgtcctgg acgagttcca
      241 cgagcgccac cttcaggcgg acacggcgct cgccctgctt aagcggctgc gacggacgtc
      301 gcggcccgac ctgaagatag tagccatgtc ggccacgctc gacgccgctc cgctcgcgcg
      361 ctacctcgaa gactgcccgc gcctgcgctc cgagggccgc ctcttcgagg tcgcggtcga
      421 gcacctcgcg cgccacgacg accggcccct cgagcttcag gtcgaggcgg ccgtccggcg
      481 cctcgtagtc gagggcctgg acggcgacgt tctcgtcttc cttccgggcg ccgccgcgat
      541 acgccgcgcg caagcggcct gcgccgccgt cgccgccgag gccgacttgc tcgtgctgcc
      601 gctgcacggc gagctgccgg ccgccgagca ggacagggcg gtggctaagg ccgaccggcg
      661 caagctcata ctctcgacta atgtcgccga gacttcgctg acgatagaag gcgtcgccgc
      721 cgtggttgat tcgggccttg cgcgcgtggc ggggcattcg ccgtggtcgg ggctgcccgt
      781 gctccgggtc gcgcgcgtga gccaggcgtc ggcgattcag cgcgcgggcc gcgccgggcg
      841 cacgcgcgag ggccgggcgc tccggctcta cacgcggcag gacttcgccg cgcggcccgc
      901 gagcgagacg cccgaggtca ggaggctcga cctcgccgag acggtgctcg agcttcgcgc
      961 cgcgggcgtc gccgacccgc gcgagctcga ctggtacgag gcgccgtcgc ccgacgcgct
     1021 cgaagccgcc gaagtgttgc tgcgccgtct cggcgccgtc tcagcgggcg gcgaactgac
     1081 tgagacgggc cggcgcatgc tccgcttccc cgtccacccg cgcctcgcgc gcatactcgc
     1141 cgaggctgag tcgcggggcg tcggcgcgca ggcgtgcgcc gtcgccgccc tcatctccga
     1201 gcgcgacata cgcgccggcc gcgtccggct cggcacgccg tccgacgccg cgaccgcgcc
     1261 ggcaaggcgc gaggcggcga agcattcgga ctcagacctg cttgagctgc tcgacctctt
     1321 cgcggaggcc gaggcgcgca acttctcgcc cgagcacgcg cgccgagccg ggctagactg
     1381 gaacgccctg cgcgccgccg agcgcgtgcg caaccagctc ctccgacttc tcgggggagg
     1441 gaaggagtcg aagacgaaag gcacgcccgt caagccctca gacgaggcgg agacacagct
     1501 tctcgtctca atcctcgcgg gctaccccga ccgcgtggcg cgccgccgcg ggccgggcga
     1561 gcgcggctcc ggcgcggagc ttctgctcgc gggcgggggc tcggcgcggc tcgcgcccga
     1621 gagcgtcgtg cgcgcctccg aattcgtcgt cgccgttgac gccgaggagc gcacgggcga
     1681 cgcgggcgcc ggggcgggcc gcgcgtccca gcgcgggacg gtcgtccgct tggcgagcgc
     1741 cgtcgagccg gactggctgc tcgacctctt cgcggacgcc ctgagcgaaa agacggaggc
     1801 ccgctggaac gcgcaggccg agcgcgtcga ggtcgtgcgc cgcctggtct atgactcgct
     1861 agtgctcgaa gagtggcgcg cgaagggggc ggagggcggc cccgaagtca cgcgcgcgct
     1921 cgcagaggcc gcgctcggag ccggcccgta cgctttcgcc gaccgcgaag acgttgagcg
     1981 gctgctcgcg cgcgtcgagt tcgtcgcgcg caccttcccc gaagcgaacc tccccgaact
     2041 gggcgaggag gacgttctcg ccgcgctcgc ctcgatgtgc gaaggccgcc ggagcttcgc
     2101 agagctgcgc gaggcggcga ggcgcggcga gctgttagaa cacctgcgcg cgcgcctcac
     2161 gccggaacag tcgcggctgc tggccacgat ggcgcccgag cgcgtcgcgc tcgcatcggg
     2221 tcgccaggcg cgcgtccagt acgagccggg ccagagcccc tacgtcgcct ctcgcctgca
     2281 agacttcttc cgcatgcgcg aggcgccgcg catagcggcc gggcgcgcgc cgctagtgct
     2341 gcacctgctc gcgcccagcc agcgccctgt gcaggtcact tcagacctcg ccggcttctg
     2401 gtcacgccac taccctcgcg tgcgccgcga actgggccgc cgctacccgc gccacgcctg
     2461 gcccgaagac ccgctcaacc catgaacgtt ctgagttaca ggttccaggt gaagaatctg
     2521 tcttcgactt ggagcctgtg actcggaacc tgaaactttc ttcccggtcg cgattgaaaa
     2581 ctgtttagca tgtgtgaaag aatgtttggg cattgttcta tcaatcttaa ataaatttca
     2641 gccacccccc gtt
//
LOCUS       DASPKR010000737         8664 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1020338, whole genome shotgun sequence.
ACCESSION   DASPKR010000737 DASPKR010000000
VERSION     DASPKR010000737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8664)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8664
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1020338"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VD968_19255"
     CDS             <1..200
                     /locus_tag="VD968_19255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16585.1"
                     /translation="RGFFGRPFRVIALHGFERAILSRVGDESVRRIAARPPIGGIDQF
                     SDSTDLVSDERWRETLRKLYE"
     gene            219..1544
                     /locus_tag="VD968_19260"
     CDS             219..1544
                     /locus_tag="VD968_19260"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HYE16586.1"
                     /translation="MPFMHNGRLATALAALLLLSAFAAAPAGAQGTAQAERVREIQAA
                     LREQNLDGWLFYDFRRSDPLSYRILLLDERAAGSRRWFYYVPVVGEPVKVVHSIERSQ
                     LDSLPGRRLVYRSWQELHAALRGALSSGGLRSGRAILRRVAMQYSPQNDVPYVSRVDA
                     GTVELVRSMPAVSVVTSADLVQQFEAAWSPEQLSMHREAADKVRAVITSAFAEIARRV
                     RAGEPVTEHDIQQFMLRRFEEEGLTSEGSAPNVSAGPNSANPHYQPTAVSHAPIRPGD
                     FVLFDVWGKLKKPGAVYTDQTWVGYVGEAVPEEHARVFRVVREARDAAVAFVRAAVRD
                     GKVIRGAQVDDVARGVIERAGYGEQFTHRTGHSIGQEGHGNGANIDNFETRDARRIVA
                     RTCFSIEPGIYLEGRFGVRSEINVYVGERDVEVTGGPAQTEVIPILKMR"
     gene            1550..2323
                     /locus_tag="VD968_19265"
     CDS             1550..2323
                     /locus_tag="VD968_19265"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HYE16587.1"
                     /translation="MLNFAMQTAREAGRVLAEKFGRALKVEKKGDIDLVTEADLAAER
                     LIVERVRSHYPRHSVLAEEAGEVLALGGADSAHKWIVDPLDGTTNYAHGYPVFCVSMA
                     LEHEGEVVIGVVYDPMRDEMFAAERGEGATLNGRTARVSGTDELNRALLCTGFPYDVR
                     TRERFARHFASFILHAQSVRRDGAAALDLAYVACGRFDGFWEEGLRPWDVAAGVLLVE
                     EAGGQVTHYDGSPFRIYQPPIAASNGLLHEPMLEVLRQS"
     gene            2407..3987
                     /locus_tag="VD968_19270"
     CDS             2407..3987
                     /locus_tag="VD968_19270"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYE16588.1"
                     /translation="MQNRYLVERQIGEGGMGAVYVATDQRFGSTVALKETFFSDPALR
                     RAFEREARLLNRLRHPALPRVSDHFSEGEGQFLVMEYIPGEDLSDMLEARGGGFPVRD
                     VLAWADQLLDALEYLHTQEPPVVHRDIKPQNLKLLPRNQIVLLDFGLAKGTPRQTLAT
                     KTASVFGYSVNYAPLEQMQGERTGTRSDLYSLGATLYHLLTGSTPPDALTRASAVLNE
                     QPDPLRPASELNPLVPAELSDVLARAMRQSAAQRFDSAAEMREALRRAGGLVSDETAA
                     TPAGTANAAAISSEQETRLLGGARPTAAAGVGGRATGVNSSPDAATLLSADATAAAAS
                     VVTRVRGEEHSAPARRPARRALTIAVSLVVVAIVGAAVYSLAGRERSETPAAQPLTQP
                     AATTPSPAEQQPAPAATQPEQQAEPTPVTAPASADSQRRPPAAKQPAPKPEGGEADAP
                     ARHPPHAEPPEIGPPPDPRSDPESPFRNRDWRTNPPTAEEMEQYRRAAEARRRERALR
                     RRALEERRRPRVPPTPPE"
     gene            complement(4428..5114)
                     /locus_tag="VD968_19275"
     CDS             complement(4428..5114)
                     /locus_tag="VD968_19275"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYE16589.1"
                     /translation="MGDAANVMGGRGANGGSAEPAALPQWAIDRIVRPAVGFVSRRVW
                     EISFRGLEHMPGEEAGGLIIAANHQTYIDPFWIGIEVKRPTRYLAWDEAFKWPLVGKA
                     MELLGSWPLALERGNPSALKRSLQWLRRGGAVLIFPEGARASEDGEPAKFKAGAARLA
                     LEAEVPVLPVTIRGGNRVWPRGRRWPRRGRVEIIFHPLRRLRALPGEDARHAARRETE
                     ALASVIQSAL"
     gene            complement(5121..5468)
                     /locus_tag="VD968_19280"
     CDS             complement(5121..5468)
                     /locus_tag="VD968_19280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16590.1"
                     /translation="MKGKLTFPRELLLVEVERRCADAACGARTFVSLTKEEARSYTGF
                     ECERCGLWNDDALSERDIPEWWEELKITSLDGVRPSKVSEEGVAVGGDDEVVSRMSGA
                     WKRLAEEGGEGEA"
     gene            complement(5478..6242)
                     /locus_tag="VD968_19285"
     CDS             complement(5478..6242)
                     /locus_tag="VD968_19285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16591.1"
                     /translation="MKDFEGKSRRLRERIKLALPVRVQCRESVGHEWSEMSRLVDVTP
                     FGARFQLLRPTERGRLLHLTLPMPRQLRCFDHIEDQYRVWALVRHVMPRVSPGEPLRF
                     EVGAAFTGRHPPPSYMKDPATRYDVGPLTAEGGLYGLRELDEAEQAAAPGGGQAARSV
                     ETRLQMAVNVIIEVFDSQGRPGEREQTVTENISRRGAAVWTSLKVERGRFLRVTDAAT
                     GLSVIAAVRGRRNGPDGIPRLHLQFLDRQWPLDGIE"
     gene            6518..>8664
                     /gene="gyrA"
                     /locus_tag="VD968_19290"
     CDS             6518..>8664
                     /gene="gyrA"
                     /locus_tag="VD968_19290"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF004043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HYE16592.1"
                     /translation="METLDRNYVNIEDEMRRSYLDYAMSVIIGRALPDVRDGFKPVHR
                     RVLWAMHELGNQYNKAYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQDFSMRYPLVD
                     GQGNFGSVDGDAAAAMRYTEARMSKITTEVLADIEKETVSFNPNYDESLSEPSVLPTR
                     VPNLLLNGSDGIAVGMATKIPPHNLTEVVEATVALIRKPNMKDEELLKLVPGPDFPTG
                     GFIYGREGIRQAYLTGRGIIQMRARAGIDRIGRGSTERDAIIITEIPYQLNKARLIER
                     IAELVNEKKLDGVADLRDESSRDGMRIVVELKRDAIPQIVLNKLYKLTPMQSTFGVIN
                     LAIVGGQPRVLKLREMLEHFIEFRREVVRRRTEYDLRKARARAHILEGLNKAIDALDF
                     IIPLIRNARSVDEARQWLTGNFATMGEVKQWKGAPADMTLAGFIDKLKKVMKRLAFSE
                     LQAQAILDLQLRRLSALERQKIIDEYEQIIKLIAELEDILANDASLRRVIVKELEDVK
                     RDFGDARRTQIIDEGVELSVEDMIADEDVAITVTKNGYVKRTPVTTYQRQGRGGKGRS
                     GAGTGKNEDYVEHLFIASTHSYLMIFTDDGQVYKLKVHQIPDALPSARGKAVVNLINI
                     PSSRKLAGVIPVREFSAGKYVVMVTRNGVIKKTELSEFQNIRSNGINAVNVDDGDELL
                     GVVLTDGTKRIFIATHDGLAIRFDEQDVRPMGRA"
BASE COUNT         1480 a         3058 c         2835 g         1291 t
ORIGIN      
        1 cgcgcggctt cttcggccgc ccgttccgcg tgattgccct ccacggcttc gagcgtgcga
       61 tactctcgcg cgtcggcgac gagtctgtgc ggcgcatcgc cgcccgcccg cccatcggcg
      121 gcatagacca gttcagcgac agcacagacc tcgtctccga cgagcgctgg cgcgagacgc
      181 tgcgcaagct ctacgagtga gctgaccaca ggcacggcat gcccttcatg cacaacggaa
      241 gactggcgac ggcgctggcg gcgctcttac tcctctcggc cttcgccgcg gctccagcgg
      301 gcgcgcaagg cacggcgcag gccgagcgcg tcagggagat tcaggccgcg ctcagggagc
      361 agaacctcga cggctggctc ttctacgact tccgccgcag cgacccgctc tcgtaccgga
      421 tactcctgct cgacgagcgc gcggccggct cgcgccgctg gttctactac gtccccgtcg
      481 tcggcgagcc cgtcaaggtc gtccactcca tcgagcgctc gcagctcgac tctctgcccg
      541 gccgccgcct cgtctatcgg agctggcagg agcttcacgc cgcgctgcgc ggggcgctct
      601 cgtccggcgg cctcaggagc ggccgcgcta tcttgcgccg cgtggcgatg caatattccc
      661 cgcagaacga cgtgccctac gtctcgcgtg tggacgcggg aacggtcgag cttgtgcgct
      721 cgatgccggc cgtctcggtg gtcactagcg ccgacctcgt gcagcagttc gaggccgcat
      781 ggtcgcccga gcagctctcg atgcaccgcg aggccgccga caaggtgcgc gccgtcatca
      841 cgtcggcctt cgccgagata gcgcgccgcg tgcgcgctgg cgagcccgtg accgagcacg
      901 acatacagca gttcatgctc cgccgcttcg aggaggaggg gttgacgagc gagggcagcg
      961 cgcccaacgt ctccgcgggg ccgaacagcg cgaacccgca ctaccagccg accgccgttt
     1021 cgcacgcgcc catacgcccc ggcgacttcg tcctcttcga cgtgtggggc aagcttaaaa
     1081 aaccgggggc cgtctatacg gatcagacct gggtcggcta cgtgggcgaa gccgtccccg
     1141 aggagcacgc gcgcgtcttc cgggtggtgc gcgaggcgcg cgacgcggcc gtggcgttcg
     1201 tgcgcgcggc cgtgcgcgac ggcaaggtca tacgcggcgc gcaggttgac gacgttgcgc
     1261 gcggggtcat agagcgcgca ggctacggcg agcagttcac gcaccgcacg ggccactcca
     1321 tagggcagga gggccacggc aacggcgcca acatagacaa cttcgagacg cgcgacgccc
     1381 gccgcatcgt cgcgcgcacg tgcttctcaa tcgagcccgg catctacctc gaagggcgct
     1441 tcggcgtgcg ctccgagata aacgtctatg tcggcgagcg cgacgtagaa gtcacgggcg
     1501 gccccgccca gaccgaagta atccccatcc ttaaaatgcg gtaagggtta tgctcaactt
     1561 cgcaatgcag acggcgcgcg aggccgggcg ggtgctggcc gaaaagttcg gccgcgcgct
     1621 gaaggtcgag aagaagggcg acatagacct cgtgacggag gccgacctcg cggccgagcg
     1681 cctcatcgtc gagcgcgtgc gcagccacta cccgcgccac tccgtactgg ccgaggaggc
     1741 gggcgaagtc ctcgccctcg gcggcgccga ctccgcacac aagtggatag ttgacccgct
     1801 cgacggcact acgaactacg cgcacggcta cccggttttc tgcgtctcga tggcgctcga
     1861 gcacgaggga gaggtcgtca tcggggtcgt ctatgacccc atgcgcgacg agatgttcgc
     1921 ggccgagcgc ggggagggcg cgaccctcaa cggccgcacg gcgcgcgtct cggggacgga
     1981 cgagcttaac cgcgcgctcc tgtgcacggg cttcccctac gacgtgcgca cgcgcgagcg
     2041 cttcgcgcgc cacttcgcca gcttcatact ccacgcgcag tccgtcaggc gcgacggcgc
     2101 cgccgccctc gacctcgcat acgtcgcctg cgggcgcttc gacggtttct gggaggaggg
     2161 cctacgcccc tgggacgtgg ccgccggagt cctcttagtc gaggaggcgg gcggccaggt
     2221 cacgcactac gacggctcgc ccttccgcat ctaccagccg cccatcgccg ccagcaacgg
     2281 cctgctccac gaaccgatgc tcgaagtgct gcggcagtcg tgagccgccg cccgcgcgcg
     2341 gcctgacgat tctcgattta cgactttact tgtatatttg tcgccgtgat cgcgccggga
     2401 actctcttgc agaaccgata cctggtcgag cgccagatag gcgagggcgg gatgggcgcc
     2461 gtctatgtgg cgaccgacca gcggttcggc agcacggtcg cgctaaagga gaccttcttc
     2521 agcgacccgg ccctgcgccg cgccttcgag cgcgaggcgc gcctgctcaa ccgcctgcgc
     2581 cacccggcgc tcccgcgcgt gagtgaccac ttctccgagg gcgaggggca gtttctcgtc
     2641 atggagtaca tccccggcga agacctctcc gacatgctcg aggcgcgcgg gggcggcttt
     2701 cccgtgcgcg acgtgctcgc gtgggccgac caactgctcg acgcgctcga atacctgcac
     2761 acgcaggaac ccccggttgt ccaccgcgac atcaagccgc agaacctgaa gctgctgccg
     2821 cgcaaccaga tcgtcctgct cgacttcggg ctcgcgaagg ggacgccgcg gcagacgctc
     2881 gcgactaaga cggcgagcgt cttcggctac tcggtcaact acgcgccgct cgaacagatg
     2941 cagggcgagc gcacgggcac gcgcagcgac ctctactctc tgggcgcgac gctctaccac
     3001 ctcctgacgg gctcgacgcc gcccgacgcg ctcacgcgcg cctcggccgt gctcaacgag
     3061 cagcccgacc cgctcaggcc cgcctctgag cttaaccctc tcgtccccgc ggagctttcc
     3121 gacgtgctag cgcgcgccat gcgccagagc gcggcgcagc gcttcgactc tgcggcggag
     3181 atgagagagg cgctgaggcg cgccggtggg ctcgtcagcg acgagacggc ggcgaccccg
     3241 gcggggactg ccaacgcggc cgcgatttcg tccgaacagg agactcggtt gctgggcggc
     3301 gcccgcccca ccgccgccgc gggcgtgggc gggcgggcga ccggcgtgaa cagctccccc
     3361 gacgccgcga ctctcctgag cgccgatgcg acggccgccg ccgcgtctgt agtcacgaga
     3421 gtcagaggcg aggagcattc ggcgccggcc aggcgaccgg cccggagagc gttaacaatc
     3481 gcggtcagcc tcgtcgtcgt cgccatcgtc ggggcggcgg tctattcgct cgcgggccgc
     3541 gagagaagcg agactccggc cgcgcagccg ttgacacagc ccgccgcgac gacgccttca
     3601 cccgccgagc agcagcccgc gccggccgcc acgcagcccg agcagcaggc ggagcccacg
     3661 ccggtgacgg cgcccgcgtc ggccgattca cagcggaggc cacccgccgc caaacagccc
     3721 gccccgaagc ccgagggcgg cgaagccgat gcgcccgccc gtcatccccc gcacgccgaa
     3781 ccgcccgaga taggcccgcc gcccgacccg cggagcgacc ccgagtcgcc cttcaggaac
     3841 cgcgactggc gcactaaccc gccgaccgcc gaagagatgg agcagtaccg ccgggcggcg
     3901 gaagcgcgcc gccgcgagcg cgccctgcgc cgccgcgccc tcgaagagcg gcgccgcccc
     3961 cgcgtccctc ccaccccgcc cgagtaaaga agaaggcagt caagacctgt ccgggcctga
     4021 ctgccctctg cctactgcct cctgccttct tctcttacgg cgggggcggc gcgaagtagc
     4081 tggtcaggtc ggctataaag tgtgtggtcg agaacgggaa gacgatgaac gcgccgtcgg
     4141 cgtccagccc cacagtgaaa gagttcgaca agacctgcgc cgccgtgtag ttgagatgtt
     4201 gggcacgagc gggcgcgcga acccgttcgg gtagagcgtg acggctacct gcggagaggg
     4261 ctttcacggg cttacgaatc cgggctacgt ggaaagtgag agatagagcc tgccccgcgg
     4321 ggcgcgacag taggctaagg gagcggaatt atatacgcgg ggccgcacga gtcgatcccc
     4381 acgttcacgc cgcccgcccc gcaggcggga agcggtaaga gggccgacta aagtgcggac
     4441 tgtattacgg aggcgagggc ttcggtctcg cggcgggcgg cgtggcgcgc gtcctcgccg
     4501 ggaagggcgc gcaggcgccg aagggggtgg aagattatct cgactcgccc gcgccgcggc
     4561 cagcgccggc ccctaggcca cacgcggttg ccgccgcgta tggtgacggg cagcacgggg
     4621 acttcggcct cgagcgcgag gcgcgcggcg ccggccttga acttggccgg ctcgccgtcc
     4681 tcggaggcgc gcgcgccctc ggggaagatg aggacggcgc cgccgcgcct gagccactgc
     4741 agagagcgct tgagcgccga cgggttcccg cgctcaagcg ccagcggcca ggagccgagc
     4801 agctccatcg ccttacccac gagcggccac ttgaaagcct cgtcccacgc gaggtagcgc
     4861 gtagggcgct tgacctcgat gcctatccag aaggggtcta tgtaggtctg atggttcgcg
     4921 gcgatgatga ggccacccgc ctcttcgccc ggcatgtgct caaggccgcg gaagcttatt
     4981 tcccacacgc ggcgcgaaac gaagccgacg gccgggcgca cgatgcggtc aatggcccac
     5041 tgcggcagcg ccgccggctc ggccgagccg ccgttagccc cccgcccgcc catgacgttt
     5101 gcggcatcgc ccaagacgct ttaagcctcc ccctcgccgc cttcttcggc caggcgcttc
     5161 catgccccgc tcatgcgcga gacgacctcg tcgtcgccgc cgactgccac gccttcttca
     5221 ctgactttgg aagggcgcac gccgtcgagc gaagttatct tcagctcttc ccaccactcg
     5281 gggatgtcgc gctcactgag cgcgtcgtcg ttccagaggc cgcagcgctc gcactcgaag
     5341 ccagtgtacg agcgcgcctc ttccttagtc agggagacaa aggtgcgcgc gccgcacgcg
     5401 gcgtcggcgc accgacgctc gacttcgacc agcaacagct ctctcgggaa tgtcagcttg
     5461 cccttcatga cctgcgtcta ttcgatgcca tccagcggcc actgacggtc taagaactgt
     5521 aggtggagtc gggggatgcc gtcggggccg ttgcgtctcc cgcgcacggc cgcgatgacg
     5581 gagaggcccg tcgccgcgtc cgtcacgcgc aggaagcgcc cgcgctcgac cttcaacgaa
     5641 gtccagacgg ccgcgccgcg gcggcttatg ttctccgtca ccgtctgctc gcgctccccc
     5701 ggccggccct ggctgtcgaa gacctcgatg atgacgttga cggccatctg caaccgcgtc
     5761 tcgaccgagc gggcggcctg cccgccgccc ggcgccgccg cctgctccgc ctcgtccagc
     5821 tcgcgcaggc cgtagaggcc gccctcggcc gtcaaggggc ccacgtcgta gcgcgtcgcc
     5881 gggtctttca tgtagctcgg cggcgggtgc ctgcccgtga aggccgcgcc cacctcgaac
     5941 cggagcggct cgcccggcga caccctcggc atgacgtggc gcaccagcgc ccacacgcgg
     6001 tattgatcct ctatgtggtc gaagcagcgg agctgccgcg gcatcgggag cgtcaggtgc
     6061 aggagccgcc cgcgctccgt gggccgcagc agttggaagc gcgccccgaa gggcgtcacg
     6121 tccaccagcc gagacatctc cgaccactcg tgcccgaccg actcgcggca ctgcacgcgc
     6181 accgggagcg cgagctttat gcgctcgcgc agacgcctgg atttgccctc gaaatccttc
     6241 atccggtgcc gtcccgcgga cacgcttcgg ggcgcaatat attgcggccg cgagggcgcg
     6301 cgggtgggcg cccttttcag gcagaaaacg ttgattttac agggtttttg cccgcgcgcg
     6361 cgggttgcca aaacgcacct ttcgggctac aatatcctgt gctttcggcc cgccgttctc
     6421 cgcacgccgt cagtacattt tttgtcactc taaaataagg ccgcgggccg ggggttttgg
     6481 ctcgggcgcg gcagattgta ccggaaaggt ttacgggatg gaaactttag atcgcaacta
     6541 cgtgaacatc gaagacgaga tgcgccggtc gtacctcgac tacgcgatgt cggtcatcat
     6601 aggccgcgcc ctgccggacg ttcgcgacgg cttcaagccc gtccaccggc gcgtcctgtg
     6661 ggcgatgcac gagctgggga accagtacaa caaggcttat aagaaatcgg cgagaatcgt
     6721 cggcgacgtg ataggcaaat accacccgca cggcgactcg gcggtttacg agacgatagt
     6781 ccgcctggcg caggacttct cgatgcgcta cccgctcgtt gacgggcagg gaaacttcgg
     6841 ctcggtggac ggcgacgccg ccgccgcgat gcgctacaca gaggcgcgca tgtcgaagat
     6901 aacgaccgag gtgctcgccg acatcgagaa ggagaccgtc agcttcaacc ccaactacga
     6961 cgagtccctg agcgagcctt cggttctccc cacccgcgtg ccgaacctcc tgctcaacgg
     7021 ctctgacggc atcgccgtcg gcatggctac gaagatcccg ccgcacaacc tgacggaggt
     7081 agtcgaggcc acggtcgcgc tcatcaggaa gccgaacatg aaggacgagg agcttttgaa
     7141 gctcgtcccc ggccccgact tccccacggg cggcttcatc tacgggcgcg aaggcatcag
     7201 gcaggcttac ctgacgggcc gcggcatcat acagatgcgc gcgcgcgccg gcattgaccg
     7261 catcggccgc gggagcaccg agcgcgacgc catcatcatc acggagattc cttaccagct
     7321 aaacaaggcg cgcctcatag agcgcatcgc cgagctcgtc aacgagaaga agctcgacgg
     7381 cgtggccgac ctgcgcgacg agtcctcgcg cgacggcatg cgcatcgtcg tggaactcaa
     7441 gcgcgacgcc ataccgcaga tagtcttaaa caagctctac aagctgacgc cgatgcaaag
     7501 cacgttcggc gtcatcaacc tcgcaatcgt cggcggccag ccccgcgtgc tcaagctcag
     7561 ggagatgctc gagcacttca tcgagttccg ccgcgaggtg gtgcgccgcc gcaccgagta
     7621 cgacctccga aaggcccgcg cgcgcgctca catactggag ggcctcaaca aggccattga
     7681 cgcgctcgac ttcatcatcc cgctcatacg caacgcccgc tcggttgacg aggcgcggca
     7741 gtggctcacg ggcaacttcg cgacgatggg cgaggtgaag cagtggaagg gcgcgcccgc
     7801 cgacatgacg ctcgccggct tcattgacaa gctgaagaag gtgatgaagc ggctcgcctt
     7861 ctccgagctt caggcgcagg ccatcctcga cctgcaactg cgccggctct ccgcgctcga
     7921 acggcagaag ataattgacg agtacgagca gattataaag ctcatcgccg agctggaaga
     7981 catcctcgcc aacgatgctt ccctgcgccg cgtcatcgtc aaggaactcg aagacgttaa
     8041 gcgcgacttc ggcgacgcgc gccgcacgca gataattgac gagggcgtcg agctctctgt
     8101 cgaggacatg atcgccgacg aggacgttgc catcaccgtc acgaagaacg gctacgtcaa
     8161 gcgcacgccc gtcacgacct accagcggca ggggcgcggc ggcaagggcc gctccggcgc
     8221 ggggacgggc aagaacgagg actacgtcga gcacctcttc atcgcctcga cccactcgta
     8281 cctgatgatc ttcacggacg acgggcaggt ctataagctg aaggttcacc agataccgga
     8341 cgcgctcccc tcggcgcgcg gcaaggccgt cgtcaacctc atcaacatcc cgtcgtcgcg
     8401 caagctcgcc ggggtgatcc ccgtgcgcga gttctcagcc ggcaagtacg tcgtcatggt
     8461 cacgcgcaac ggcgtgataa agaagacgga gctttccgag ttccagaaca tacgctcgaa
     8521 cggcatcaac gccgtcaacg ttgacgacgg cgacgagttg ctcggcgtcg tgctcacgga
     8581 cggcaccaag cgcatcttca tcgccacgca cgacgggctc gccatacgct tcgacgagca
     8641 ggacgtgcgc ccgatggggc gcgc
//
LOCUS       DASPKR010000738         5322 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_124612, whole genome shotgun sequence.
ACCESSION   DASPKR010000738 DASPKR010000000
VERSION     DASPKR010000738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5322)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5322
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124612"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..859
                     /locus_tag="VD968_19295"
     CDS             <1..859
                     /locus_tag="VD968_19295"
                     /inference="COORDINATES: protein motif:HMM:NF025022.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HYE16593.1"
                     /translation="AFIMAYVGLMVGAAKGDYLELSALGGIFSDKATRRDVKILDTSV
                     IIDGRIADVAETGFLSGTIVIPQFILRELQQVADSPDSSKRQRGRRGLDMLNRLQGNS
                     ALDIQVVDTDFPAVKEVDLKLLELSKSLDGVVVTNDFNLNKVAQLHGIQVLNINELAN
                     ALKPVVLPGEAMRVFILREGKEYNQGVAYLDDGTMVVVDNARRMIGKTADIAVTSVLQ
                     TTAGKMIFGRLWEDAEGAEARAANAGGAGGGQRRQFQQREPRQPAHAPAPTTPGPAAH
                     MRSTGETGE"
     gene            932..1624
                     /gene="ispD"
                     /locus_tag="VD968_19300"
     CDS             932..1624
                     /gene="ispD"
                     /locus_tag="VD968_19300"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: protein motif:HMM:NF013308.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HYE16594.1"
                     /translation="MNVAIIVAAGSGSRMGGGGRAKQFREISGIPIIIHTLSRFEQCE
                     TIGRVVAVVPAGEEEGLLALARAHGLGKLARAVAGGRSRTESVWRGLQASAEARESGG
                     VVAVHDGVRPFVRPEEIDGVVREAERSGAAILAAPASDTIKESSEDGLRVARTLARSR
                     LWQAQTPQCFRFELLERAYRLALAEGLEATDDSALVERTGAPVAIVPGGAHNLKITTP
                     HDFALAEILLRG"
     gene            1706..2182
                     /gene="ispF"
                     /locus_tag="VD968_19305"
     CDS             1706..2182
                     /gene="ispF"
                     /locus_tag="VD968_19305"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF014588.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HYE16595.1"
                     /translation="MFRIGIGHDTHRLAEGLRLVLGGVEVESERGAEGHSDADALTHA
                     VTDAVLGALCEGDIGQHFPDSDPRWEGADSLQLLARVMWLAGERGYRVVNVDATVMLE
                     RPKLRQHIPEMRARLAEVLGVGPERVSVKAKSGEGLDSVGEWLAVTAQAVVLLEHI"
     gene            2213..3529
                     /locus_tag="VD968_19310"
     CDS             2213..3529
                     /locus_tag="VD968_19310"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: protein motif:HMM:NF004490.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006206 - pyrimidine nucleobase metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HYE16596.1"
                     /translation="MRPQGVIRRKRDGGELTREQIAYFVRGVVGGEWDDYQASALLMA
                     VFLRGMTAAEQQALTEEMLRSGEVLDFSALPLPKADKHSTGGVGDKTSLILAPLAATC
                     GVAVPMISGRGLGHTGGTLDKLESIPGYRVGLDLAEFRRVLERVGFAMMGQTRSIAPA
                     DRKLYALRDATETVESVPLIVASIMSKKLAAGLDALVLDVKTGSGAFMRDGARARELA
                     RGLVETGNRAGVKTEALLTDMGQPLGRAVGHAAEVRECLHILRGETDEATRPVRDLSV
                     ELAARMVALAGAAPSLEEARRRVAASLESGAALECFRRNVEEQGGDPSVCDEPWRLAD
                     LTLEEVAVESARAGYATAVDAAEVGRAVASVGGGRVHVTDSVDKHVGFLADVKVGQEV
                     RAGQALGLLLCRPGRGAEAAERIRAAYTVGDEPPASVPELIKEVIT"
     gene            3529..4608
                     /locus_tag="VD968_19315"
     CDS             3529..4608
                     /locus_tag="VD968_19315"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HYE16597.1"
                     /translation="MKSRLFLSLTLTCALVASGASCRQEGRASDEKGRTRVGIVFDIG
                     GKDDRSFNAAAYDGVKCAETGKHLDGTPCDKPSLGIVLRDVEPGNPTSIEPALRAFAE
                     RGYDLIIGIGFAQAPILDQVAKDYPDINFAIVDGASQLPNVASLVFKEHQGSYLVGMI
                     AARTSKTGTIGFLGGMDIPLIHKFGTGYEEGARAVNPNIRVVENYVGVTDSAWNNPGK
                     GKELALSQIGKGADVIFTAAGNSGLGAFDAVEQAGRDEQGRARRFVIGVDSNQNMVKP
                     GFVLTSMVKRVDNAVYTIVEDVVNGRFRGGFHVYGLEADGVAYAMDEHNRPLIPPDII
                     REVEAAKQRIISGEIEVTDVMAPKK"
     gene            4615..>5322
                     /locus_tag="VD968_19320"
     CDS             4615..>5322
                     /locus_tag="VD968_19320"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYE16598.1"
                     /translation="MLELRDITKRFGDVLANDRVNISVRPGTIHAIVGENGAGKSTAM
                     RIAYGFYTADSGEIMVDGEPRPVRTPHDAIALGIGMVHQHFMLVSTMTVAENIVLGAE
                     PGSAAAVDLRKAAEEIRALSAEFRLSVDPTALVEDLSVGQQQRVELLKALYRHARLLI
                     LDEPTAVLTPQEVEEFFAILRRMREQGKTVIIITHKLSEVLAISDDVTVMRDGRVVGR
                     VETARTSAAELARMMVGR"
BASE COUNT          912 a         1795 c         1841 g          774 t
ORIGIN      
        1 cgccttcata atggcctacg tcgggctgat ggtgggggcc gcgaagggcg actacctcga
       61 gctctccgcg ctgggcggca tcttcagcga caaggccacg cgccgcgacg tgaagatttt
      121 agacacctcc gtcatcattg acggccgcat cgccgacgtg gccgagacgg gcttcctctc
      181 cggcaccatc gtcatcccgc agttcattct gcgcgagctc cagcaggtgg ccgactcgcc
      241 cgactcgtcg aagcgccagc gcggccggcg cgggctcgac atgctcaacc gccttcaggg
      301 aaactccgcc ctcgacatac aggtcgttga cacggacttc cccgccgtca aggaagttga
      361 cctgaagcta cttgagctgt cgaagagttt ggacggcgtc gtcgtcacca acgacttcaa
      421 cctcaacaag gtcgcgcagc tacacggcat tcaagtcctc aacatcaacg agctggcgaa
      481 cgccctcaag ccggtcgtgc tgccgggcga ggccatgcgc gtcttcatac tgcgcgaggg
      541 caaggagtac aaccaaggcg tcgcctacct cgacgacggc acgatggtcg tcgttgacaa
      601 cgcgcgccgc atgataggca agacggcaga catcgccgtc acgagcgtcc tccagacgac
      661 ggccggcaag atgatcttcg gccggctctg ggaggacgcc gagggcgccg aggcgcgcgc
      721 cgcgaacgcg ggcggcgcgg gcggaggcca gcgccggcag ttccagcagc gcgagccgcg
      781 ccagcccgcg cacgcccccg cgcccacgac gccggggcct gccgcgcaca tgcgcagcac
      841 gggcgagaca ggagaatagt gcggagtgcg gggtgatgaa taagaacttc tgtttaattc
      901 atcaccccgc actccgcact ccgcgttcgt tatgaacgtc gccatcatcg tcgccgccgg
      961 gtcggggagc cggatgggcg gcggcgggcg cgccaagcag ttccgggaaa tctccggcat
     1021 accaatcatc atccacacgc tctcgcgctt cgagcagtgc gagacgatag gccgcgtggt
     1081 cgcggtcgtg ccggcgggcg aggaggaggg gctcctggcg ctggcgcgcg cgcacgggct
     1141 cggcaagctc gcgcgcgcag tcgcgggcgg gcgctcccgc accgagtcgg tctggcgcgg
     1201 cctacaggct tcggccgagg cgcgcgagag cggaggcgtc gtggcagtgc acgacggcgt
     1261 gcgccccttc gtcaggcccg aggagattga cggcgtggtg cgcgaggccg agcgcagcgg
     1321 cgcggcgata ctggccgcgc ccgcctcgga cacgataaag gagtcgtcgg aggacggcct
     1381 gcgcgtcgcg cgcacgctcg cgcgctcgcg cctctggcag gcgcagacac cgcagtgttt
     1441 ccgcttcgag cttttggagc gcgcctaccg gctcgcgctc gccgaagggc tcgaagccac
     1501 ggacgacagc gccctcgtcg agcgcacggg cgccccggtc gcaatagtcc ccggcggcgc
     1561 gcacaacctg aagataacca cgccgcacga cttcgcgctg gctgaaattt tattaagagg
     1621 ctaggggcta gatgaagacg ccgcccccgc ttgagaagca tcaacgtcgt gagcgtagta
     1681 tctagcctct agcctctagc ctattatgtt ccgcataggc atcggccacg acacgcacag
     1741 gctggcggag ggcttaaggc tcgtgctggg cggcgtggag gtcgagtcgg agcgcggggc
     1801 cgagggccat tcggacgccg acgcccttac gcacgccgtc acggacgcgg tgctgggcgc
     1861 gctgtgcgag ggcgacatag gccagcactt tccggacagc gacccgcgct gggagggggc
     1921 cgacagcctg caacttctcg cgcgcgtgat gtggctggcg ggcgagcgcg gctaccgcgt
     1981 ggttaacgtt gacgcgaccg tgatgcttga gcggccgaag ctgcggcagc acatacccga
     2041 gatgcgcgcg cgcctcgccg aagtgctcgg cgtcgggcct gagcgcgtga gcgtcaaggc
     2101 caagtcgggc gaggggctcg actcggtcgg cgagtggctc gccgtcacgg cgcaggccgt
     2161 cgtcctgctc gaacacattt aagccgcaca gggagaacgg cgaccgaacc gcatgaggcc
     2221 gcagggagtc atccgtagga agcgcgacgg cggcgagctc acgcgcgagc agatcgcgta
     2281 cttcgtgcgc ggcgtggtcg gcggcgagtg ggacgactac caggcgtccg ccctgctgat
     2341 ggccgtcttc ctgcgcggca tgactgccgc cgagcagcag gctctgaccg aggagatgct
     2401 tcgctcgggc gaggtgctcg acttctctgc gctaccgctt cccaaagccg acaagcactc
     2461 gacgggcggc gtcggcgaca agacctcgct catactcgcc ccgctcgcgg cgacgtgcgg
     2521 cgtcgccgtg ccgatgattt cggggcgggg cctcggccac acgggcggca cgctcgacaa
     2581 gctcgaatcc atacctggct acagggtggg gctagacctc gcggagttcc ggcgcgtgct
     2641 cgagcgggtc ggcttcgcga tgatggggca gacgcgctcc atcgctccgg ccgaccgcaa
     2701 actctacgcg ctaagggacg cgaccgagac ggtcgagagc gtgcctctca tcgtcgcctc
     2761 catcatgtcg aagaagctcg ccgccggcct cgacgcgctc gtcttagacg ttaagaccgg
     2821 ctccggcgcc ttcatgcgcg acggggcgcg cgcaagggag ctcgcgcggg gcctggtcga
     2881 gaccggcaac cgcgccgggg tgaagaccga ggccctcctg accgacatgg gccagccgct
     2941 cgggcgcgcc gtcggccacg ccgcggaggt gcgcgagtgc ctgcacattc tgcgcggcga
     3001 gacggacgag gcgactcggc ccgtgcgcga cctctccgtc gagctcgctg cgaggatggt
     3061 ggcgctcgcc ggggccgcgc cgtcgctgga agaggcgcgg cggcgcgtcg cagcctcttt
     3121 ggagtcgggc gcggcgctcg aatgtttccg ccgcaacgtc gaggagcagg gcggcgaccc
     3181 ctccgtgtgc gacgagccgt ggcggctcgc cgatttgacg ctcgaagagg tcgcggtaga
     3241 atccgcgcgc gcgggctacg cgacggccgt ggacgcggcg gaagtcggcc gcgccgtcgc
     3301 ctccgtcggc ggcgggcgcg tccacgtcac agactccgtt gataagcacg tcggcttcct
     3361 cgccgacgtg aaggtggggc aggaggtgcg cgcgggccag gcgctcggcc tgctgctctg
     3421 ccgccccggg cgcggcgccg aggccgccga gcgcatacgc gccgcctaca cggtcgggga
     3481 cgagccgccc gcgagcgtcc ccgagctaat caaggaagta ataacgtgat gaagtcacga
     3541 ctgttcttat ccctgacatt gacctgcgcg ctcgtggcct ccggcgcttc ctgccggcag
     3601 gaggggcgcg cctccgacga gaagggcaga acccgcgtcg gcatcgtctt cgacatcggc
     3661 ggcaaggacg accgctcgtt caacgccgcc gcctacgacg gggtcaaatg cgccgagacc
     3721 ggcaagcacc tcgacggcac gccctgcgac aagccttcgc tcggcatcgt cttgcgcgac
     3781 gtcgagcccg gtaatccgac ctctatcgag ccggcgctca gggccttcgc cgagcgcggc
     3841 tacgacctca tcatcggcat aggcttcgcg caggcgccca tactcgacca ggtcgcaaag
     3901 gactaccccg acatcaactt cgccatcgtt gacggcgcga gccaactgcc gaacgtcgcc
     3961 tcgctcgtct tcaaggagca ccagggctcc tacctcgtcg gcatgatagc cgcgcgcacg
     4021 tcgaagaccg gcaccatagg cttcctcggc ggcatggaca tcccgctcat acacaagttc
     4081 ggcaccggct acgaggaggg cgcgcgcgcc gtcaacccga acatacgcgt cgtggagaac
     4141 tacgtgggcg tgaccgacag cgcgtggaac aaccccggca aggggaagga gctggcgcta
     4201 tcgcagatag gcaagggcgc cgacgtgata ttcacggccg cgggcaactc gggcctgggc
     4261 gccttcgacg cagtcgagca ggccggccgc gacgagcagg ggcgcgcccg ccgcttcgtc
     4321 atcggcgttg actcgaacca gaacatggtc aagcccggct tcgtcctgac cagcatggtc
     4381 aagagggttg acaacgccgt ctataccatc gtcgaggacg tggtcaacgg ccgcttccgc
     4441 ggcggcttcc acgtttacgg cctcgaggcc gacggcgtcg catacgccat ggacgagcac
     4501 aaccgcccgc tcatcccccc ggacatcatc cgggaggtcg aggccgccaa gcagcgcatc
     4561 atcagcggcg agatcgaagt gaccgacgtg atggcgccga aaaaatagtg acgtatgctt
     4621 gagctgagag acataaccaa gcgattcggc gacgtgctcg ccaacgaccg cgtaaacatc
     4681 agcgtgcggc ccggcacgat ccacgccatc gtgggcgaga acggggcggg gaagtccacg
     4741 gccatgcgca tcgcctacgg gttctacacg gctgactcgg gcgagataat ggttgacggc
     4801 gagccgcgcc ccgtgcggac gccgcacgac gccatcgcgc tcggcatcgg catggttcac
     4861 cagcacttca tgctcgtgag cacgatgacg gtggccgaga acatcgtgct cggggcggag
     4921 cccggctcgg ccgcggccgt tgacctccgc aaggcggccg aggagattcg cgccctgtcg
     4981 gcagagttcc gcctctcggt tgacccgacc gcgctggtcg aagacctctc cgtcgggcag
     5041 cagcagcgcg tcgagctact gaaggcgcta tacaggcacg cgaggctcct gatactggac
     5101 gagccgacgg ccgtcctgac gccgcaggag gtcgaggagt tcttcgcgat actccgtcgc
     5161 atgcgcgagc agggcaagac tgtcatcatc atcacgcaca agctatcgga agtcctcgcc
     5221 atctcggacg atgtgacggt gatgcgcgac ggccgcgtgg tcggccgcgt cgagacggcg
     5281 cggacgagcg cggcggaact tgcgcgcatg atggtcgggc gc
//
LOCUS       DASPKR010000739         6177 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_379821, whole genome shotgun sequence.
ACCESSION   DASPKR010000739 DASPKR010000000
VERSION     DASPKR010000739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6177)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6177
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_379821"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..355
                     /locus_tag="VD968_19325"
     CDS             <1..355
                     /locus_tag="VD968_19325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16599.1"
                     /translation="PTRPDATTPGPPAGAVTDDSITNMLDNLYRTADDYLTQLERLSG
                     GTLLRADNPLMLPRAFSQIAAELRTQYTLGYYPTNAAHDGKYRKIRVRSTRKSVSVRA
                     RPGYRARKAAQARRS"
     gene            complement(365..1213)
                     /locus_tag="VD968_19330"
     CDS             complement(365..1213)
                     /locus_tag="VD968_19330"
                     /inference="COORDINATES: protein motif:HMM:NF014627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HYE16600.1"
                     /translation="MKRFAHAAFDTALIVLGILSAGLGLKGFLLSSNFIDGGVTGVSM
                     LVSRTAGLPLSVLLLVFNLPFIALGYRQVGKAFAVKSALAIAGLAVCLAVVKFPDVTP
                     DKLLTAVFGGLFIGAGIGLTIRGGAVLDGTEVAALLVSKSSNLLRVGDVILVLNVFIF
                     AAAAFLLGIEAAMYSILTYFAASKTIDFLLHGIEEYTAVTIISERSDEIRRAITDDLH
                     RGVTVFKGSGGLSGAGQDILYCVVTRLEIGRVKSAANDIDPSAFILIHPLADASGGVI
                     KKPMLH"
     gene            1353..2282
                     /locus_tag="VD968_19335"
     CDS             1353..2282
                     /locus_tag="VD968_19335"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HYE16601.1"
                     /translation="MRLWLSKNSEVPLREQLVRQIMLGVISGDLKPAQRLPSTRELAR
                     RFKIHSNTVSAAYRDLEQRGWLEFRKGSGVYVRSTGGDGLAGAPGSGLELDQLISAFL
                     ALARAHGFSLAEIQSRVKHWLELQPPDHFLLIEPDEALREILSAEIREATGFRVVGAS
                     PADLRAGSGLLAGAAVVTMNWHEEEVKGLLPSGTTPLLLRSRSLPESLAGEKPPPPDA
                     LVSVVSRWQTFLDWARVFLVAAGLDAAALNFRDAREPGWERGLRSSAFVITDALTERD
                     LPAGTRARVYRVVADSSLDELRGFVGRFLTGAK"
     gene            2336..5248
                     /locus_tag="VD968_19340"
     CDS             2336..5248
                     /locus_tag="VD968_19340"
                     /inference="COORDINATES: protein motif:HMM:NF021606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2339 domain-containing protein"
                     /protein_id="HYE16602.1"
                     /translation="MPEDLPSRELVEELIRRIEHLELVLQSNTARLHAVERRLGLTGR
                     PLGLGVEPAPVAPPRRPAERPRQGSEEGGRVDARTASDVTPSPGADGATGGAPPPPST
                     TTTSARGAEEARPRSWADPVARERAEGEAAGARAAREGDERSAEWVEPEPARARRDLE
                     TFIGGSLFAWVGIIAGAVAVALFLKEAFERDWIGPSMRVAVGAALGVGLLGLGERLRG
                     RGLRQYAFVLSGGGILVLYLSIYAAFNFYQLLGQPAAFLLMALVTATAVLLSVRLDAL
                     AVAVLGLLGGFATPLLLSTGKDNQVALFTYVALLDAGVLAVAYFKRWRSLNFISFAAT
                     VLMTFGWLVTHYRQEKLWATVFFLSVFFVLYSLLAVVHNVLPRRPARWYDVLLVSANA
                     TFYFGLSYSLLYEAGYGRGAAAAQALALSAAFALLYLAVRALHRDDRLVTYAYVGAAV
                     TFLTVAAAIRLELHWVTIAWAVEGLALAWAGVRANEPALRHSAVAVACVAAGHWLGWD
                     VPGFAFKEGAAFVPLVNRRALSCAILVATMAASARLYGGAGDVEEGERTAVNNFYVLA
                     ASGLALTLLTLDINDYFGTRLAGVAADEAERRAVVENTRQFSVTTLWALYGGGALVLG
                     VLRRLVLLRYAALLLLAACVAKVLAVDSGFYSAAWHAPVFNHTFGAYAFLALALAACA
                     RFYARGGHVAEAERAGAVAALLFAANFVALAGLSLEALGFYDRVVARLGAGAAPADIT
                     RLNEGKAFALGLIWSAHGAAAFLYGLRRDSRAWRYGGLLLIVLASIKALAWDLRYYDA
                     AWHAPVFNRTLASFAVLVAAMWLVVRGYARSERISEEELTARPFFTVFANVLAVIALS
                     AEASGHFAAQIGAAGGGRTEQGLRDLWLARQLALSVVWAVYGGALLLVGRLRRSRLLR
                     LMSLALLGLTTLKVFFWDLSSLDRVYRIISFIVLGAILLAVSYLYQKSQQQQRAAD"
     gene            complement(5245..5586)
                     /locus_tag="VD968_19345"
     CDS             complement(5245..5586)
                     /locus_tag="VD968_19345"
                     /inference="COORDINATES: protein motif:HMM:NF017897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF962 domain-containing protein"
                     /protein_id="HYE16603.1"
                     /translation="MADQELRTFAEFWPFYVREHSRQGTRLLHAAGTLASTALLVALL
                     TTGRWRWLPLVLVVGYAAAWAGHFFVEHNRPATFKYPLWSFAADYKMVALMLTGRMNR
                     EVERARLREPL"
     gene            complement(5591..>6177)
                     /locus_tag="VD968_19350"
     CDS             complement(5591..>6177)
                     /locus_tag="VD968_19350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HYE16604.1"
                     /translation="QLQALGREEFDRRLRSAFEQLERERAAGRVKHYGVATWNGFRAQ
                     AGSRGHHPLERMVELAREAAGGADSHGFRFVQLPFNLGMPEALVADNQPFRGASVSVL
                     EAAKALGVTVVASASILQGKVAQDLPEHIRRPLGSLPTDAQTAIQFVRSTPGVTTALV
                     GMSSRAHVEENLRLASVAPASAGDYSKLFTQGGG"
BASE COUNT          862 a         2166 c         2125 g         1024 t
ORIGIN      
        1 cccgacgcgc cccgacgcca cgacgccggg gccgcctgcc ggcgccgtca ccgacgactc
       61 catcaccaac atgctcgaca acctctaccg cacggcggac gactacctca cgcagctcga
      121 gcgcctctcg ggcggcacgc tcctccgcgc cgacaacccc ctgatgctgc cgcgcgcctt
      181 ctcgcagata gcggccgagc ttcgcaccca atacacgctc ggctactacc cgacgaatgc
      241 ggcgcacgac ggcaagtata gaaagattcg cgtccgctcc acgcgcaaga gcgtctccgt
      301 ccgcgcccgc cccggctacc gcgcgcgcaa ggcggcccag gcccggcgct cttaacccga
      361 aggctcagtg cagcatgggc ttcttgatga cgccgccgga ggcgtcggcg agcgggtgta
      421 ttaggatgaa ggccgagggg tctatgtcgt tcgccgcgct cttgacgcgg ccgatctcca
      481 ggcgcgtgac gacgcagtag agtatgtcct gcccggcgcc cgaaaggccg ccgctcccct
      541 tgaagacggt cacgccgcgg tgcaggtcgt cagtgatggc gcggcgtatc tcgtcgctcc
      601 tctccgagat aatcgtgacg gccgtgtact cctctatgcc gtgcagcagg aagtctatgg
      661 tcttcgaggc ggcgaagtag gtgagtatcg agtacatggc cgcctcgatg ccgagcagga
      721 aggccgcggc cgcgaagatg aagacgttca gaacgagtat cacgtcgccg acgcgcagca
      781 ggttgctgct cttgctgacg agcagggcag ccacctccgt cccgtcgagc accgcgccgc
      841 cgcgtatcgt gagccctatc ccggcgccta tgaagaggcc gccgaagacg gccgtcagga
      901 gcttgtcggg cgtcacgtcc gggaacttga cgacggcgag gcagaccgcc agccccgcta
      961 tcgccagcgc gctcttgacg gcgaacgctt tgccgacctg cctgtagccg agcgcgatga
     1021 acggcaggtt gaagacgagc agcaggactg aaagcggcag ccccgccgtc cgcgagacga
     1081 gcatcgagac gcccgtaacc ccgccgtcaa tgaagttgct cgacagcagg aaccccttga
     1141 gccccagccc ggcagacagg atgccgagca ctatgagggc cgtgtcgaac gccgcgtggg
     1201 cgaacctttt catcagcgcg aactcccgag aagcattggt cagaaggcgg tgaggacgac
     1261 tttctcagac ggcgccccgt cgcgcaagtt ccggcgtgga gccgcttttt cccttccaac
     1321 ttccgccgtc cgccgttaaa ctgccgggcc gtatgcggct ctggctgtcg aagaacagcg
     1381 aagtgcctct gcgcgagcag ctcgtgcggc agatcatgct cggcgtaatc agcggcgacc
     1441 taaagcccgc gcagcgcctc ccctcgacgc gcgagctcgc gcgccgattc aagattcact
     1501 cgaacaccgt gagcgccgcc taccgcgacc tcgagcagcg cggctggctg gagttccgca
     1561 aagggagcgg cgtctatgtc cgcagcacgg gcggcgacgg gctggcgggg gcgccggggt
     1621 cggggctcga gctcgaccag ctaatctcgg ccttcctcgc gctcgcgcgc gcgcacggat
     1681 tttcgctcgc agagattcag tcgcgcgtca agcactggct tgaattgcag ccgcccgacc
     1741 acttcctgct gatcgagccg gacgaggcgc tgcgcgaaat cctctccgcg gagattcgcg
     1801 aggctacggg cttccgcgtc gtaggcgcgt cgcccgccga cctgcgcgcc ggctcggggc
     1861 tgctcgcggg cgcggccgtc gtcacgatga actggcacga ggaggaagtg aaaggcttgc
     1921 tgccctccgg cacgacgccg cttctcttgc gctcgcgctc cctgcccgag tcgctcgcgg
     1981 gcgagaagcc gccgccgccc gacgcgctcg tctccgtggt ctcgcgctgg cagacctttt
     2041 tagactgggc gcgcgtcttc ctcgtcgccg cggggctgga cgccgcggcc ctcaacttcc
     2101 gcgacgcgcg cgagccgggc tgggagcgcg gcctgcgctc gagcgccttc gtcatcacgg
     2161 acgcgctgac cgagcgagac ctgccggccg ggacgcgcgc gcgcgtctat cgcgtcgtcg
     2221 ccgactcttc gctcgacgaa ctgcgcggct tcgtcggccg cttcctcacg ggcgccaagt
     2281 gatcgtcgcc cgcgggcacg ttacctaaaa tcggaaactc ctttatcatt cgcccatgcc
     2341 cgaagattta ccatcgcggg agctcgtcga ggagctgata aggcgcatcg agcacctcga
     2401 gctcgtcttg cagagcaaca cggcgcggct gcacgccgtc gagcgcaggc tgggcctcac
     2461 ggggcgcccg ctcggcctcg gcgtcgagcc cgcgccggtc gctccgcctc gccgcccggc
     2521 cgagcggccg cgacagggaa gtgaagaggg cgggagggtt gacgcacgca cggcctcaga
     2581 cgtgactccc tcgccgggcg ccgacggcgc gaccggcggg gctccgccgc ctccgagcac
     2641 gacaacgacg agcgcgcggg gggcggaaga ggcgcggccg cgctcctggg ccgaccccgt
     2701 ggcgcgcgag cgcgccgagg gcgaagcggc tggcgcgcgc gcggcgcggg agggtgatga
     2761 aagaagcgcc gagtgggttg agcctgagcc cgcgcgtgcg cgtcgcgatc tcgaaacgtt
     2821 cataggcggt agcctgttcg cctgggtcgg catcatcgcg ggggccgtgg ccgtcgcgct
     2881 cttcctcaag gaggctttcg agcgcgactg gataggcccc tcgatgcgcg tcgcggtggg
     2941 cgcagccctc ggcgtcgggc tgctgggcct gggcgagcgc ctgcgcggtc gcggcctccg
     3001 acagtacgcc ttcgtgctgt cgggcggcgg catactcgtc ctctacctct ccatctacgc
     3061 cgcgttcaac ttctaccagc tcctcggcca gcccgccgca tttctcttaa tggcgctcgt
     3121 gacggcgacg gccgtgctgc tctccgtgcg gctggacgcc ttggcagttg cggtgctcgg
     3181 cctgctaggc ggcttcgcga cgcccttgct tctctcgacg gggaaggata atcaggtcgc
     3241 gctcttcaca tacgtcgcgc tgctcgacgc gggcgtgctc gccgtcgcct acttcaagcg
     3301 ctggcggagc ctcaacttca tctccttcgc cgccaccgtg ctgatgacct tcggctggct
     3361 cgtcacgcac tacaggcagg agaagttgtg ggctaccgtc ttcttcctga gcgtcttctt
     3421 cgtgctctac tcgctcctgg ccgtcgtgca caacgtcctg ccgcgaaggc ccgcgcgctg
     3481 gtacgacgtg ctgctcgtct cggccaacgc gaccttctac ttcggcctga gctactcgct
     3541 actctacgag gcgggctacg ggcgcggggc ggccgccgct caggcgctcg cgctctccgc
     3601 ggccttcgcc ctgctctacc tcgccgtccg cgcgctccac cgcgacgacc gcctcgtcac
     3661 ctacgcgtac gtcggcgcgg ccgtcacgtt tctcacggtc gccgccgcga ttcgtctgga
     3721 gttgcactgg gtgacgattg cctgggcggt cgagggcctc gcgctggcgt gggcgggcgt
     3781 gcgtgcgaat gagccggcgc tcaggcactc cgccgtggcc gtcgcctgtg tggccgcggg
     3841 ccactggctc gggtgggacg tgccgggctt cgccttcaaa gagggggcgg ccttcgtgcc
     3901 gctcgtcaac cgccgcgcgc tttcgtgcgc catcctcgtg gcgactatgg cggcgagcgc
     3961 gcgcctctac ggaggcgccg gagacgttga ggagggcgag aggactgccg tcaacaactt
     4021 ctacgtgctc gccgctagcg ggctcgcgct cacgctcctg acgctcgaca taaacgacta
     4081 cttcggcacg aggctggcgg gcgtcgcggc cgatgaggcg gagcgccgcg ccgtagtcga
     4141 gaacacgcgg cagttctccg tcacgaccct ctgggccttg tacggcgggg gcgcgctcgt
     4201 gctcggcgtg ctgcgccggc tcgtgctcct gcgttacgcg gcgctcctcc tgctcgcggc
     4261 ctgcgttgcg aaggtgctgg ccgtggactc tggcttctac tcggcggcgt ggcacgcgcc
     4321 ggtcttcaac cacacgttcg gcgcatacgc cttcctggcg ctcgcgctcg ccgcgtgcgc
     4381 gcgcttctac gcgaggggcg ggcacgtagc cgaagccgag cgtgcgggcg cggtggcggc
     4441 gctgctcttc gccgcgaact ttgtcgcgct cgcgggccta agcctcgaag ccctgggctt
     4501 ctacgaccgg gtggttgcgc ggctcggcgc gggcgccgcc ccggccgaca tcacccggtt
     4561 gaacgagggc aaggcgttcg cgctcggcct catctggtcg gcgcacgggg cggccgcgtt
     4621 cctctacggc cttcggcgcg actcgcgcgc gtggcgctac ggcgggctgc tgctgattgt
     4681 gctcgcgtcc atcaaggcgc tcgcgtggga cttgaggtac tacgacgccg cctggcacgc
     4741 gcccgtcttt aaccgcacgc tggcgtcgtt cgcggtgctg gtcgcggcga tgtggctcgt
     4801 ggttcggggc tacgcgcgct cggagcgcat ctcggaggag gagctgaccg cccggccctt
     4861 cttcacggtc ttcgcgaacg tgctggccgt aatcgcgttg agcgcggagg ctagcggcca
     4921 cttcgccgcg cagataggcg cggcgggcgg cgggcgaacc gagcagggcc tgagagacct
     4981 ctggctcgcc cgccagctcg cgctctcggt cgtgtgggca gtctatggcg gcgcgctgct
     5041 tttggtcggg cggcttcgac gctcgcggct gctgcgcttg atgtcgctcg cgctcttggg
     5101 cctgactacc ctgaaggtct tcttctggga cttgtcctcg ctcgaccgcg tctatcgcat
     5161 catctccttc atcgtcctcg gcgcaatact gctcgccgtc tcttacctct accagaaaag
     5221 ccagcagcag cagcgcgcgg ccgactagag aggctcgcgc aagcgggcgc gctcgacctc
     5281 gcgattcatg cggccggtga gcatgagggc gaccatcttg tagtcggctg cgaaagacca
     5341 gagcgggtac ttgaaggtcg ccgggcggtt gtgctcgacg aagaagtgac cggcccacgc
     5401 ggcggcgtag cccacgacga gcacgagcgg gagccagcgc cagcgccccg tcgtgaggag
     5461 cgcgacgagg agcgccgtgc tcgccaatgt gcctgccgcg tgcagaagtc gcgtcccctg
     5521 ccggctgtgc tcgcgcacgt agaagggcca gaactccgcg aacgtcctca actcctgatc
     5581 ggccacccct tcaccccccg ccctgcgtga aaagcttgct gtagtccccg gccgacgcgg
     5641 gcgcgacgct cgcgagccgc aggttctctt cgacgtgcgc gcggctgctc atgcctacga
     5701 gcgcggtggt gacgccgggc gtcgagcgca cgaactgtat ggcggtctgc gcgtcggtcg
     5761 ggagcgagcc taaggggcgg cgtatgtgct cgggcaaatc ttgcgcgacc ttgccctgaa
     5821 ggatcgaggc gctggcgacg acggtgacgc cgagcgcctt cgcggcttct agcaccgaga
     5881 cgctcgcacc gcggaagggc tggttgtcgg cgacgagcgc ctcgggcatg ccgaggttga
     5941 aggggagctg cacgaagcgg aagccgtgag agtctgcgcc gcccgcggcc tcgcgggcga
     6001 gctcgaccat gcgctcaagc gggtggtggc cgcgcgagcc tgcctgcgcg cggaagccgt
     6061 tccacgtcgc aacgccgtag tgctttacgc gcccggccgc gcgctcgcgc tcgagctgct
     6121 cgaaggccga gcgcaggcgg cggtcgaact cttcgcgccc gagggcctga agctgcg
//
LOCUS       DASPKR010000740         2549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_250334, whole genome shotgun sequence.
ACCESSION   DASPKR010000740 DASPKR010000000
VERSION     DASPKR010000740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250334"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..934
                     /locus_tag="VD968_19355"
     CDS             <1..934
                     /locus_tag="VD968_19355"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HYE16605.1"
                     /translation="SVILSCFDTTPDTRRNKIVYSELEFPSVMYVYEAHARDGRFRVE
                     KVKSEDGTTAPLDRMLAAIDEETLLVPLSHVLFKSAYLQDARRITERAHEVGALVVLD
                     TYQSAGTVPFSVKDLDVDFATGGSVKWLCGGPGAGYLYVAPRLRARLEPKVTGWMAHA
                     EPFAFEDGPVRYAEGAARFLHGSPAVSALYAAKSGYEIINQIGVEAIREKSVRQTQRL
                     IEMCEEAGLPVTSPRDPERRGGTITIAAPHAPAVTAELIRRETIVDYRPGAGIRVSPH
                     FYTKDEELEHVVREIRDILDTRAYARHEAAGAAF"
     gene            939..1754
                     /locus_tag="VD968_19360"
     CDS             939..1754
                     /locus_tag="VD968_19360"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYE16606.1"
                     /translation="MPEDILKRNNVKVSGRGTRPMMFAHGFGCDQNMWRFVAPAFEDD
                     FRVVLFDYVGSGKSDLSAYDPEKYSALDGYVEDVLDVCRALQLSDVVFVGHSVSGVVG
                     MLASIKEPGLFSRLILVGPSPCYINDPPEYRGGFDRADIEGLLDLMEKNYIGWANFLA
                     PVVAKNPERPELARELEESFCSTDPRVARLFAEATFFSDNRTDLARVRVPSLIMQCSE
                     DAIAPEEVGEYLSRNLRGSTLRVLEATGHCPHMSHPEETVRVIREYLAAEGVS"
     gene            1782..>2549
                     /locus_tag="VD968_19365"
     CDS             1782..>2549
                     /locus_tag="VD968_19365"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HYE16607.1"
                     /translation="MDELLNTAPCGFLAFADDGTILTANGTLLGWLRRGAGELAGRHV
                     ESILPPGGRIFYQTHFFPLLKLHGRAEEIYLSLRRADGADLPVLANAARTERDGAAVN
                     DCVMVPMRQRRRFEDELLAAKREAEEANRAKDALIEELSTPVITVWDGVLLAPVIGSL
                     SRERADLMTGALLRAVVSRRARVVILDVTGSRAMGADALHHLTRAAAAVRLMGAGCIL
                     TGISAGVARTLVRTGADLASVEVRRTLADGLASALRAT"
BASE COUNT          402 a          929 c          826 g          392 t
ORIGIN      
        1 gtcggtcata ctctcctgct tcgacaccac gcccgatacc cgccgcaaca agatagtcta
       61 ttccgagctg gagttcccct ccgtcatgta cgtctatgag gcgcacgcgc gcgacgggcg
      121 cttccgcgtc gagaaggtca agtccgagga cgggacgacc gcgccgctag acaggatgct
      181 cgcggcgatt gacgaggaga cgctgctcgt cccgctctcg cacgtcctct tcaagagcgc
      241 gtaccttcag gacgcgcgcc gcatcacgga gcgcgctcac gaggtcggcg cgctcgtcgt
      301 cctcgacacg tatcagtcgg ccggcacagt ccccttcagc gttaaagacc tggacgttga
      361 cttcgccacg ggcggctccg tcaagtggct ctgcggcggc cccggcgcgg gctacctcta
      421 cgtcgcgccg cggctgcgcg cccgcctcga gccgaaagtc acaggctgga tggcgcacgc
      481 cgagccgttc gccttcgagg acggccccgt ccgctacgcc gagggggccg cccgcttcct
      541 gcacggctcg ccggccgtat cggcgctcta cgcggccaag tcgggctacg agataatcaa
      601 ccagataggc gtcgaggcca tacgcgaaaa gagcgtccgg cagacgcagc gcctgatcga
      661 gatgtgcgag gaggcgggcc tccccgtcac cagcccccgc gaccccgagc gccgcggcgg
      721 caccatcaca atcgcggccc cgcacgcgcc cgccgtcacg gccgagttga tacgccgcga
      781 gaccatcgtt gactaccgcc ccggcgcagg gattcgcgtc tcgccccact tctacacgaa
      841 ggacgaggag cttgagcacg tcgtccgcga gattcgagac atactcgaca cgcgcgccta
      901 cgcacgccac gaggctgcgg gcgcggcctt ctaagcagat gcccgaagac attctgaagc
      961 ggaataacgt taaggtttcg gggcgcggca cgcgccccat gatgttcgcg cacggcttcg
     1021 gctgcgacca gaacatgtgg cgcttcgtcg cgccggcctt cgaggacgac ttccgcgtcg
     1081 tcctcttcga ctacgtcggc tcgggcaagt cagacctctc ggcctacgac cccgaaaaat
     1141 actcggccct cgatggctac gtcgaggacg tgctcgacgt ttgccgcgcg ctgcaattaa
     1201 gcgacgtcgt cttcgtcggc cactccgtca gcggcgtcgt cggcatgctc gcgtccatta
     1261 aggagccggg cctcttctcg cggctcatac tcgtcgggcc ttcgccctgc tacataaacg
     1321 acccgcccga ataccgcggc ggcttcgacc gcgcggacat cgagggcctt ctcgacctga
     1381 tggagaagaa ctacatcggg tgggccaact tcctcgcccc cgtggtcgcg aagaaccccg
     1441 agcggcccga gctcgcgcgg gagctggagg agagcttctg ctcgaccgac ccgcgcgtgg
     1501 cgcgcctctt cgccgaggcg accttcttct ccgacaaccg caccgacctc gcgcgcgtgc
     1561 gtgtgccttc gctcatcatg cagtgctcgg aggacgcgat agcgcccgag gaggtgggag
     1621 agtacctgag ccggaacctg cgaggcagta cgctccgcgt gctcgaagcg acgggccact
     1681 gcccgcacat gagccacccc gaggagaccg tgcgcgtgat ccgagagtac ctcgcggccg
     1741 agggggtttc ctgagcgcgg ccctgacgcg cgacggcgag catggacgaa ttgctgaaca
     1801 ccgcgccctg cggcttcctc gcgttcgccg acgacggcac gatccttact gccaacggaa
     1861 cgctgctcgg ctggctccgc cgcggcgcgg gtgagctggc ggggcgccac gtcgagtcca
     1921 tactcccgcc cggcgggcgc atcttctacc agacgcactt cttcccgctg ctcaagctgc
     1981 acggccgcgc cgaggagatt tacctctccc tgcgccgcgc cgacggcgcc gacctcccgg
     2041 tgctcgccaa cgccgcgcgc acagagcgag acggcgcggc cgtcaacgac tgcgtaatgg
     2101 tgccgatgcg acagcgccgc cgcttcgagg acgagctgct cgccgcgaag cgcgaggccg
     2161 aggaggccaa ccgcgcgaag gacgctttga tcgaggagct ttccacgccc gtcatcaccg
     2221 tctgggacgg cgtactgctt gcgcccgtca tcggcagtct cagccgcgag cgcgcggact
     2281 tgatgacggg cgcgctgctc cgcgccgtcg tctcgcgccg cgcgcgcgtc gtcatcctcg
     2341 acgtgacggg ctcgcgcgcg atgggcgcgg acgccctcca tcacctcacg cgcgcggcgg
     2401 cggccgtccg gctgatgggc gccggctgca tcctgaccgg gataagcgcg ggcgtggcac
     2461 gcacgctcgt gcgcacgggc gctgacctgg cgagcgtcga agtcaggcgc acgctggccg
     2521 acggcctcgc ctcggccctt cgcgcgact
//
LOCUS       DASPKR010000741         2057 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_380965, whole genome shotgun sequence.
ACCESSION   DASPKR010000741 DASPKR010000000
VERSION     DASPKR010000741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380965"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            231..812
                     /gene="pth"
                     /locus_tag="VD968_19370"
     CDS             231..812
                     /gene="pth"
                     /locus_tag="VD968_19370"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: protein motif:HMM:NF013368.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HYE16608.1"
                     /translation="MTADCLIMLIVGLGNPGAEYEWTRHNLGFMLVDLLARQAGAQVK
                     RGECRALVGRADVEGRAVELVKPQTYMNLSGESVACLLRKRAGLKASAGLLVISDDIA
                     LPFGSIRLRPRGSSGGQKGLKNIISALGTDEFMRLRVGIKPEHPVSDTSRFVLERFPA
                     AQRGEVEKVLERGAEALRAVLRDGIDRAMAQYN"
     gene            894..1319
                     /gene="rpsF"
                     /locus_tag="VD968_19375"
     CDS             894..1319
                     /gene="rpsF"
                     /locus_tag="VD968_19375"
                     /inference="COORDINATES: protein motif:HMM:TIGR00166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HYE16609.1"
                     /translation="MAEKRVYEVLFIVDPDVGEEETTRLVVTMHHIVTDQGGAVTRNE
                     TLGRRQLAYRIGRKTEGVYVLFEIEGTGREIAELERRMRVSDQIMRYITVRVDEDRQR
                     AEKLKSRRTRKASRRPASAAAAGAAGGAQSAGGGEGVEA"
     gene            1502..1711
                     /gene="rpsR"
                     /locus_tag="VD968_19380"
     CDS             1502..1711
                     /gene="rpsR"
                     /locus_tag="VD968_19380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HYE16610.1"
                     /translation="MRRRKVCRFCVDKVDIIDYKDVRLLQNFIPERGKILPRRISGVC
                     TAHQRMLTEAIKRARNIALLPYTAD"
     gene            1727..>2057
                     /gene="rplI"
                     /locus_tag="VD968_19385"
     CDS             1727..>2057
                     /gene="rplI"
                     /locus_tag="VD968_19385"
                     /inference="COORDINATES: protein motif:HMM:TIGR00158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HYE16611.1"
                     /translation="MATTNVLLREDVDNLGARGEIVKVKAGYARNFLLPRKLAVEATP
                     GNVKQIEAERAALLKKEARERSTAEGQAALMQALRLDFERKVGEHGILYGSVTSMDIA
                     EALRQKGF"
BASE COUNT          380 a          655 c          725 g          297 t
ORIGIN      
        1 ctgcacgtga gcgaccttca ggcgcccgag ggcgtcacca tcctgacgga gccggagacg
       61 gccgtcgcga cggtcgccgt cgtgcgcgag gagcaggtcg aggagcgcac gcccgaggag
      121 gaagtctccg agcccgaagt cataggcaag ggcaagaagg aagacgagga gtaagccgcc
      181 ggcagtcggc tttcagccgt cagctccctg ctttagctga aagctgaccg atgaccgctg
      241 attgcctcat catgctcatc gtcggactcg gcaaccccgg cgcggagtac gagtggacgc
      301 gccacaacct cggcttcatg ctcgttgacc tgctggcgcg tcaggcgggc gcgcaggtga
      361 agcgcgggga gtgccgcgcg ctcgtcgggc gggccgatgt ggaaggccgc gccgtcgagc
      421 tggtcaagcc gcagacctac atgaacctga gcggcgagtc ggtggcgtgc cttctgcgca
      481 agcgcgcggg gcttaaggcg tcggccggcc tgctggtgat aagcgacgac atcgcgctgc
      541 ccttcggctc gatacgcctg aggccgcgcg gctcgtcggg cgggcagaag ggtttgaaga
      601 acatcatctc ggcgctcggc acggacgagt tcatgcgcct gagagtcggg ataaagccgg
      661 agcacccggt ctccgacacg tcgcgcttcg tgcttgagag gttcccggcg gcccagcgcg
      721 gcgaggtcga gaaggttttg gagcggggcg ccgaagcgct ccgcgccgtc ctgcgcgacg
      781 gcattgacag agcgatggct cagtacaact agcggccggc cgccagccgc cggccttttc
      841 cttcttgctt cggcccgcgg gccgaggctt gacatccaaa aggaggatga actttggcag
      901 agaagagagt ttacgaagtc ctcttcatcg ttgaccccga cgtgggcgaa gaggagacca
      961 cccgcctcgt agtgacgatg caccacatcg tcaccgacca gggcggcgcc gtcacgagga
     1021 acgagacgct cgggcgccgc cagctcgcct accgcatagg acggaagacc gagggcgtct
     1081 atgtgctctt cgagatagaa ggcacggggc gcgagatagc ggagctcgag cgccgcatgc
     1141 gcgtgagcga ccagatcatg cgctacatca ccgtccgcgt tgacgaagac cggcagcgcg
     1201 ccgagaagct caagtcgcgg cgcacgcgca aggcctcgcg ccgccccgcg tctgcggccg
     1261 cggccggcgc tgctggcggc gcacagtccg cgggaggcgg cgagggcgtc gaggcttaag
     1321 acgtgcctcg gccgtggtcg ccctcactcg tgcgagggct tctaaagggt ttagaagata
     1381 aagggaagag aaaatgtcca gaaacgttaa cgaccgcgac ttcgacgccg acgacgacgg
     1441 cggaggccac ggaggcgggg gacgccccga ccgcggcggg cgcgccgggg gccgcggccg
     1501 cctgcgccgc cgcaaagtct gccgcttctg cgtggacaag gttgacatca ttgactacaa
     1561 ggacgtgagg cttttgcaga acttcatccc ggagcgcggc aagattctgc cgcgccgcat
     1621 ctcgggcgtc tgcaccgcgc accagcgcat gctgaccgag gcgatcaagc gcgcgcgcaa
     1681 catcgcgctg ctgccctaca ccgcggacta aggaggttca cacgagatgg cgactacgaa
     1741 cgttttgtta cgcgaggacg tggacaacct cggcgcccgc ggcgagatcg tcaaggtcaa
     1801 ggccggctac gcgcgcaact tccttctgcc gcgcaagctc gccgtcgagg cgacgcccgg
     1861 taacgtcaag cagatcgagg ccgagcgcgc cgcgctgttg aagaaggagg cgcgcgagcg
     1921 ttccacggcc gagggccagg ccgcgctgat gcaggcgctc cgactcgact tcgagcgcaa
     1981 ggtcggcgag cacggcatcc tctacggctc cgtgacctcg atggacatcg ccgaggcgct
     2041 caggcagaag ggcttcg
//
LOCUS       DASPKR010000742         6073 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1416904, whole genome shotgun sequence.
ACCESSION   DASPKR010000742 DASPKR010000000
VERSION     DASPKR010000742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6073)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6073
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1416904"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(103..1155)
                     /locus_tag="VD968_19390"
     CDS             complement(103..1155)
                     /locus_tag="VD968_19390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16612.1"
                     /translation="MKLKSINRLGLAAVAALSLLLASAAPSAAQKDSKKSGGKKDGEK
                     VKKELPPGTPVLWREHANIESLDLLLGPGGEEMKPDLSSVTFIREEEKGFSPKFRVKD
                     GKGRVWVAKMGNEAQPETAAVRLIWAAGYATEVNYLVPCVKIPGAPHPKKGTVERCEG
                     DGFANVRFEARPEEVKRLDEWSWTENPFVGTKELQGLLVLMALVNNWDLKDENNKILH
                     VRSGAVGDELRYIVSDLGATFGKSPSGLLWQLKRSRNKPEDFAGQRFISEVKNGNVFF
                     KFGGKNQKLFDDISVDEARWVGRQLSRLSDRQVADAFRAANYAPGDVDLLTRAVRARI
                     RDLAGIGGAAASAGRR"
     gene            complement(1178..2215)
                     /locus_tag="VD968_19395"
     CDS             complement(1178..2215)
                     /locus_tag="VD968_19395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16613.1"
                     /translation="MKIKSDIGAALAVAFALALATAGQSPAFASTPQKDKKAEPPPQG
                     KPVLWRGHEDASSLNLLHGPGGEGKGPDLSRVTFVKEETGGYSPKFRVTDGSGRVWVA
                     KLGKEAQPETASVRLVWAAGYVTEASYLVPCVKIEGAPAPKKKVDRCEGNGFANVRFE
                     ARPDEYKRLEEWSWGQNPFKGTKEFQGLVVLMGLLNNWDLKDANNKIVYVPGGGGEGE
                     LRYIISDLGATFGKTGNFITHNRNEPETYAKTKFVEGVDGGRVRFAYDGKNAGLFSNI
                     TVEQAKWAGEQLSRLSDEQIADAFRAANYPPEEVSLLAGAVRRKINELVSLPGGAAAP
                     VAAAPDSPGKQ"
     gene            complement(2265..4418)
                     /gene="ppk1"
                     /locus_tag="VD968_19400"
     CDS             complement(2265..4418)
                     /gene="ppk1"
                     /locus_tag="VD968_19400"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: protein motif:HMM:NF003921.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HYE16614.1"
                     /translation="MNTKSNKQPTPGGGGARDLSRAEVQSVPTSEAHTMFNRELSQLE
                     FYRRVLEEALDSTQPLLERLKFLAIFTDNLDEFFMIRVSGLKEMIEEEATELSPEGMK
                     YADQLREIRARLLPMFAEQMRCLREEVLPALDAEGLRIVAYSTLSLPERQAMREFFKK
                     KVLPVLTPQGVDPGHPFPYISNLSLNLALMVEPVPEMGITRSLTGNPEPRFVRLKMPP
                     LVPRLVPVAGESAKFVMLEDLIASNLESLFPRMRSGDCHAFRVTRDADVEVREDEAHD
                     LLHLVEQSLRRRRFGTPVRLEVSAGMPDEMVTYLTESLDLAPDDVYKVDGPLGLSGLM
                     QLYKLDRPDLKDRPFKPKVPARIRNAKSLFDVIRRRDLLMHHPYTSYTVVTDFIRHAA
                     HDPDVLAIKMCLYRTGANSPIPQALIEARDRDKEVTALVELKARFDEQANIEWAKRLE
                     EAGVHVVYGIMGLKTHSKVSLVVRREDDELRHYVHVATGNYNPVTSNFYTDLSLFTAD
                     EEIGSDAADLFNFLTGFSRQKEYERLLVAPANLREKMIGLVRREAEHARAGRPARIIV
                     KINRLADPTMIRALYEASQAGVEIDLIVRGICMLRPGVPGLSETIRVRSIVGRFLEHS
                     RAFYFQNGGDEDVYTGSADWMPRNFDRRVEVVAPVRDEALKKYLKDVLLDAYLRDNVK
                     ARQLRPGGTYERIPVPPGAEHFNSQLYFIDAPEPE"
     gene            complement(4691..>6073)
                     /locus_tag="VD968_19405"
     CDS             complement(4691..>6073)
                     /locus_tag="VD968_19405"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HYE16615.1"
                     /translation="VRLRAKVDTEFGPSPGRTGFVEAVIRGTRPGVEQIVLTAHLQEE
                     QGSANDDGSGCANLLELARVFNKLIRDGKMKRPARDLRFWWTDEIYSEYRYFRDHPGE
                     PKKILANVHQDMTGANQAMGSRVQHLIFAPHSRTSYLDALFESVGTYLIHTNNGYLAA
                     SRQGGLPRPHTRPLYSARGTRQGYNARFVPYFDSSDHMVFVEGAVGVPAVALINWDDP
                     YIHSSDDDLFQIDQTQLRRNNFLIGAMAYFLATADEADVPLLLAETYAQGARRLANDL
                     QAAMGALRDSAREPDEGWKRASFIIEQGAQRERRALMSALVFARDDRPGVRANELAAR
                     LKDRETEMKASLQTYFASVFGRQPGPVRLTAAEQSASRKIPANAPTLEAYFANRDKVP
                     NEARGKLHGLMRDEVFNFVDGKRSYYEIYKAVYAEAMAAGTWYYGTVTLEDVTALLDA
                     AVAAQALTLR"
BASE COUNT          908 a         1991 c         2023 g         1151 t
ORIGIN      
        1 gagcgccgcg acggccgcaa cagccacgaa cggcccccaa cggttcctgc gtctgattgg
       61 tttcaccatg ccccttcccg gctccccctt cgcggcggct ttttagcggc ggcccgcgct
      121 cgcggccgcg ccgccgatgc ccgccaagtc tcttatcctc gcgcgcaccg ccctcgtcag
      181 caagtccacg tcgccgggcg cgtagttggc ggcgcggaag gcgtcggcga cctgcctgtc
      241 gctcaggcgc gagagctgcc ggccgaccca gcgcgcctcg tcaaccgata tgtcgtcgaa
      301 gagtttctgg ttcttgccgc cgaacttgaa gaagacgttg ccgttcttga cctcggagat
      361 gaagcgctgg ccggcgaagt cctcgggctt gttgcggctg cgcttgagct gccaaagcag
      421 cccgctcggg ctcttgccga acgtggcgcc gaggtcgctg acgatgtagc gcagttcgtc
      481 gccgaccgcg ccgctgcgga cgtgcaggat tttgttgttc tcgtccttca agtcccagtt
      541 gttgacgagg gccatcaaga cgaggagccc ttgcagctcc ttcgtgccta cgaacgggtt
      601 ctccgtccag ctccactcgt ccaggcgctt gacctcctcg ggccgcgcct cgaagcggac
      661 gttggcgaag ccgtcgccct cgcagcgctc gacagtcccc ttcttcgggt gcggcgcgcc
      721 gggtattttc acgcaaggga cgaggtagtt gacctccgtg gcgtagccgg ccgcccagat
      781 gaggcggacg gcggctgtct cgggctgggc ctcgttgccc atcttcgcca cccacacgcg
      841 gcccttaccg tctttgacgc gaaacttcgg cgagaagccc ttctcctcct ccctgatgaa
      901 agtgacgctg ctcaggtcgg gcttcatctc ctcgccgccg gggccgagca gaaggtctag
      961 cgactcgatg ttcgcgtgct cgcgccacag cacgggcgtc cccggcggga gttccttctt
     1021 gaccttctcg ccgtccttct tcccgcccga cttcttcgaa tccttctgcg ccgcggacgg
     1081 cgcggcggag gcaagcagga gcgagagcgc tgcgacggcc gcgaggccca gtctgttaat
     1141 gctctttagt ttcatctttg gtttcagttc tccgaatcta ttgctttccg ggtgaatcgg
     1201 gcgcggcggc cacaggcgcc gcggcccctc ccggcaaact caccagctcg tttatcttcc
     1261 tgcgcacggc cccggccaga aggctaacct cttcgggcgg gtagttggcg gcgcggaagg
     1321 cgtcggcgat ctgctcgtcg ctcaggcgcg agagctgctc gcccgcccac ttggcttgct
     1381 cgaccgtgat gttggagaag agcccggcgt tcttgccgtc gtaggcgaag cgcacacggc
     1441 ccccgtcaac gccctcgacg aacttcgtct tggcgtatgt ctccggctcg ttgcggttgt
     1501 gcgtgatgaa gttgccggtc ttgccgaacg tggctccgag gtcgctaatg atgtatcgca
     1561 gctcgccctc gccgccgccg cccggcacat agactatctt gttgttggcg tccttcaagt
     1621 cccagttgtt gagcaggccc atcaggacga cgaggccctg gaactccttc gtccccttga
     1681 aagggttctg cccccaagac cactcctcga gccgcttgta ctcgtcgggc cgcgcctcga
     1741 agcggacgtt ggcgaagccg ttgccctcgc acctgtcaac cttcttcttc ggcgcgggcg
     1801 cgccctctat cttcacgcac gggacgaggt aactggcctc ggtcacgtag cccgcggccc
     1861 acacgagccg cacggaggcc gtctcgggct gcgcctcctt gccgagcttg gcgacccata
     1921 cacgccccga gccgtccgtg acgcggaact tgggcgagta gccgcccgtc tcctctttga
     1981 cgaaggtgac gcggctcaag tcaggcccct tgccttcgcc gccggggccg tgcaaaagat
     2041 ttagtgacga cgcgtcctca tgcccgcgcc agagcacagg cttcccctgc ggaggcggct
     2101 ccgccttctt gtccttctgc ggcgtcgagg cgaaggcggg cgactggccc gcagtcgcca
     2161 gcgcgagagc gaaggcgact gccaacgcgg ctccgatgtc cgattttatc ttcatggcgt
     2221 actcactcct gattcgctta cgcgaaatac gcgcggggga taaatcactc gggctcgggg
     2281 gcgtcaatga aatagagctg gctgttgaag tgctcggcgc cgggggggac ggggatgcgc
     2341 tcgtaagtgc cgccgggccg tagctggcgc gccttcacgt tgtcgcgcag gtaggcgtcc
     2401 agcagcacgt ccttcaggta cttcttcagc gcctcgtcgc gcacgggggc gacgacctcg
     2461 acgcggcggt cgaagttgcg cggcatccag tcggcgctgc cggtgtaaac gtcctcgtcg
     2521 ccgccgttct ggaagtagaa ggcgcggctg tgctccagga agcggccgac gatgctgcga
     2581 acccttatcg tctcggagag ccccggcacg ccgggccgca gcatgcagat gccgcgcact
     2641 atcaagtcaa tctcgacgcc ggcctgcgag gcctcgtaga gagcgcgaat catcgtcggg
     2701 tctgcgagcc ggtttatctt gacgatgatg cgcgccggcc ggcccgcgcg cgcgtgctcg
     2761 gcttcgcgcc tcaccagccc gatcatcttc tcgcgcaggt tcgcgggcgc tacaagcagg
     2821 cgctcgtact ccttctggcg cgagaagccg gtcaggaagt tgaagaggtc tgcggcgtcc
     2881 gagcctatct cctcgtcggc ggtgaacagg ctcaggtccg tgtagaagtt cgacgtgacg
     2941 ggattgtagt tgcccgtggc gacgtgaacg tagtggcgca gctcgtcgtc ctcgcggcgg
     3001 acgacgagcg agaccttgct gtgcgtcttc aggcccatga tgccgtaaac gacgtggacg
     3061 ccggcctcct cgagccgctt cgcccactcg atgttggcct gctcgtcgaa gcgggccttc
     3121 agctcgacga gcgcagtgac ctccttgtcg cggtcgcggg cctctatgag cgcctgcggg
     3181 atgggcgagt tggcgcccgt gcggtagagg cacatcttta tcgccagcac gtcggggtcg
     3241 tgcgcggcat gccgtatgaa gtccgtcacg accgtgtagg acgtgtacgg gtggtgcatc
     3301 agcaggtcgc gcctgcggat cacgtcgaag aggctcttag cattccttat gcgcgccggg
     3361 actttcggct tgaacggcct gtccttcagg tcgggccggt cgagcttgta gagctgcatc
     3421 agccccgaaa gcccgagcgg gccgtcaacc ttgtaaacgt cgtcgggcgc gaggtcgagc
     3481 gactcggtca ggtaagtgac catctcgtcc ggcatcccgg ccgagacttc gagccggacg
     3541 ggcgtgccga agcggcgcct cctgagcgac tgctcgacca ggtgcaggag gtcgtgcgcc
     3601 tcgtcctcgc gcacctcaac gtcggcgtcg cgcgtgacgc ggaaggcgtg gcagtcgccc
     3661 gagcgcatgc gcgggaagag cgactccagg ttcgaggcga tgaggtcttc gagcatcacg
     3721 aacttggccg actctcccgc gacggggacc aggcgcggta cgagcggcgg catcttcagc
     3781 cggacgaagc gcggctcggg gttgcctgta agcgagcgcg tgatgcccat ctccggcaca
     3841 ggctcgacca tcagcgcgag gttcaggctc aggttcgaga tgtaggggaa cgggtggccg
     3901 gggtcaacgc cctgcggcgt taagacgggc agcaccttct tcttgaagaa ctcgcgcatg
     3961 gcctgccgct cggggagcga gagcgtgctg taggcgacga tgcgcagccc ctccgcgtct
     4021 agcgcgggca gaacctcctc gcgcaggcat cgcatctgct cggcgaacat cggcagcagc
     4081 cgcgcgcgta tctcgcggag ctggtcggcg tacttcatgc cctcgggcga gagttcggtg
     4141 gcctcctcct cgatcatctc cttgaggccg gagacgcgga tcatgaagaa ctcgtcgagg
     4201 ttgtcggtga atatggccag gaacttcagg cgctccaaga gcggctgcgt cgagtcgagc
     4261 gcttcttcga ggacgcggcg gtagaattcg agctggctca gctcgcggtt gaacatcgtg
     4321 tgggcctcgg aggtcggcac gctctgcacc tcggcccgcg acaggtcgcg cgcgccgccg
     4381 cctccggggg ttggctgttt gttcgacttt gtgttcattg tcaccgccgg gcgcgcccta
     4441 gagacttaag gcccgccgaa tactaacgcg aaattacgca cgcgaggagt gcgtgcgcgt
     4501 aggagagaca cttgccggaa cgccgccaac acaggcaagc cgtattcccc cgacgagaat
     4561 ccctgggcgc gagccttcga agttattgta ctgcactatt taagctcgcg gaagcggggc
     4621 gcccgcaaaa tgcgcccggc ggcgtctgta ccgaatccgt cctcgcgccc tgccgcggcc
     4681 gggcgccagt tcacctgagt gtcagggcct gcgccgccac ggccgcgtcg agcagcgccg
     4741 tcacgtcttc gagcgtgacc gtgccgtagt accaggtgcc ggccgccatc gcctcggcat
     4801 agacggcctt gtagatttcg tagtaggagc gcttgccgtc cacgaagttg aagacctcgt
     4861 cgcgcatcaa cccgtgcagc ttgcccctcg cctcgttcgg gactttgtct cggttcgcga
     4921 agtaggcttc gagcgtcggg gcgttggcgg gaatcttcct gctcgccgac tgttcggcgg
     4981 cggtcagccg gacggggccg ggttgtctcc cgaagacgga ggcgaaataa gtttgcagcg
     5041 aagccttcat ctccgtctcc ctgtccttta gccgggcggc cagctcgtta gcccgaacgc
     5101 ccgggcggtc gtcgcgggcg aacaccagcg ccgacatcag cgcgcgcctc tctctctgcg
     5161 ccccctgttc gattatgaag cttgcgcgct tccagccttc gtccggctcg cgcgcggagt
     5221 cgcgcagagc ccccatcgcc gcttgcaggt cgttcgccag acgcctcgcg ccctgcgcgt
     5281 aggtctcggc gaggagcagc ggcacgtccg cctcgtcggc cgtggcgagg aagtaggcca
     5341 tcgcgccgat gaggaagttg ttgcggcgga gttgcgtctg gtctatctgg aagaggtcgt
     5401 cgtcagagga gtgaatgtag gggtcatccc agttgatgag cgcgacggcc gggacgccta
     5461 ccgcgccctc gacgaagacc atgtggtctg acgagtcgaa gtaggggacg aagcgcgcgt
     5521 tgtagccctg ccgggtgccg cgcgccgagt agagcgggcg cgtgtgcggg cggggcaatc
     5581 caccctgacg gctcgcggcg aggtagccgt tgttcgtgtg aatcaggtag gtgccgacgc
     5641 tctcgaagag ggcgtcgagg taggaggtgc gcgagtgcgg cgcgaatatg aggtgttgca
     5701 cgcggctccc catcgcctgg ttcgcgccgg tcatgtcctg gtggacgttt gccagaatct
     5761 tcttcggctc gcccgggtgg tcgcggaagt atctgtactc ggagtagatt tcgtccgtcc
     5821 accagaagcg caggtcgcgc gccgggcgct tcatcttccc gtccctgatg agcttgttga
     5881 agacgcgcgc cagctcgagg aggttggcgc agccgctgcc gtcgtcgttg gcggagccct
     5941 gctcctcctg caagtgcgcg gtgagcacta tctgctcgac gccggggcgc gtgccgcgta
     6001 tgacggcctc cacgaagccg gtgcggccgg gcgaggggcc gaactccgtg tcaaccttcg
     6061 cgcgcagccg gac
//
LOCUS       DASPKR010000743         4870 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1795397, whole genome shotgun sequence.
ACCESSION   DASPKR010000743 DASPKR010000000
VERSION     DASPKR010000743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4870)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4870
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1795397"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1404
                     /locus_tag="VD968_19410"
     CDS             <1..1404
                     /locus_tag="VD968_19410"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE16616.1"
                     /translation="TGLLFVGSAVLWAAACAAGAGDRRAARASGGAGAPPSAAAPSDA
                     AAQTQASPAATVEAAAASPVGAGMAATAEALPVKDWPQWRGPSRDGHVGGAGLPAEWP
                     KGLKEEWRVKVGVGHSSPVVAGGRVYQFARQGEEEVVVALDPATGKEIWRSAGAAAPY
                     EMNPAARDHGKGPKSTPVVAGGRVFTLGINGVLSAHDAATGRLVWRKEFSKRFPSTSP
                     LYGTAMSPLVEKNLLIAHVGGHDGGALTAFDAATGKEVWSYAGDGPAYSSPVVFTAGG
                     ERQVVTFTQKELVAVSAASGKLLWKLPAKTHYDTNCNTPVAYKDTLIVSIEGRGLVAL
                     RPVKQGAGWAAQEVWANSDVELYMNTPVLDGDRLVGFSARKKGQFFAVDAATGKTLWQ
                     GPGRAGENASILNVGGALLLLTNDSTMFVLSAGAKGFEPAAQYDVAQSPTWAHPLFLG
                     HRILVKDETTLASLSLR"
     gene            complement(1393..2958)
                     /locus_tag="VD968_19415"
     CDS             complement(1393..2958)
                     /locus_tag="VD968_19415"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HYE16617.1"
                     /translation="MRRRSRLTSLALLFALLLTLSPSCRRHTSRPALEPSEPLDTIDR
                     RVGVPMPTPVERDLEEIRRRRTLTVLAPYNSTTYFIHQGEPMGYEYELLRAFASEQGL
                     ALRMVVVTDRKSILAMLNEGTGDVAAARLVPTPEDEANVSFTRPLYRTEPALVQQEAA
                     PEAAGEAAEKALQPPPEADEPEPVEIEARLVTRPAQLAGETVHLPEKSAYRRTLLELE
                     DEVSGDIQVVEVGGKIQDEALAQKVARGEVEFTVMQSNLAELKEAEFKNLKVRPVVGR
                     THPVSWAVRKNSPALLEELNRWIGEEKQGSLFGTLYKKYFTDRKRHVERVTSEYLTST
                     TGKLCQYDGLLRQYAAELGWDWRLLASQAFQESRFKPEARSWAGATGLLQLMPRTARE
                     FGVQNPLDPEDNVRGAVRFIKWLGEYWRERVPDEGERLKFILASYNCGAGHVEDARRL
                     TEKYGGDTRAWDDVSYWLLQKSTQQYSTDPVVKFGFCRGIEPVNYVGHILERFDHYRQ
                     FVVAETAEGRSPQ"
     gene            complement(3187..4689)
                     /locus_tag="VD968_19420"
     CDS             complement(3187..4689)
                     /locus_tag="VD968_19420"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE16618.1"
                     /translation="MFEQMPAPKPWYRSWQGLLFAGGGVAAALLVVLLIYLIGSREDP
                     NTEAHYAALERHRAEQQKQAPPADPALAQTAEQQPAGEQQPAQGEQAAAGAAQGEASA
                     AQPGSQPAAQGRARRNYWTQFRGPARDGRYDERPVKTDWPSGGLAPLWRQPIGGGYSS
                     FSVADGVAYTIEQRRSQEVVTAYQVETGRELWAHGWNAVFREQTGDGPRSTPTWDSGR
                     LYALGATGELRCLDARSGRPIWSKNILTENGASNLQWGMAASPLVVDDKVVVMPGGSN
                     GRTVVAYDKATGALRWKSMSGAASYTSPMLVTLAGRRQILVVTGGQVAGLAPEDGAVL
                     WGFPWSNSAGINVSQPIVAGPNRFFISAGYGKGAALVEVSPAGRGLAARAVWESPRMK
                     NKFNSSVLHDGHVYGLDEGVLSCMELATGEVKWKARGYGYGQVVLASGHLIITTEEGE
                     VALVRAAPGAHAEVARFSALEGRTWNVPAIADGRLLVRNATQMACYKLAD"
BASE COUNT          714 a         1659 c         1714 g          783 t
ORIGIN      
        1 acgggactgc ttttcgtagg ctcggccgtg ctgtgggccg cggcgtgcgc ggccggcgcg
       61 ggcgaccgcc gcgccgctcg cgcctctggg ggcgcgggcg ccccgccgtc agccgccgcg
      121 ccttccgacg ctgccgcaca aacgcaggcg tcgcctgccg cgacagtcga agccgcggcc
      181 gcgtcgcctg tcggggcggg catggcggcg actgcggagg ccctgccggt caaggactgg
      241 ccgcagtggc gcgggccgag ccgtgacggg cacgtgggcg gcgccggcct gccggccgag
      301 tggccgaagg ggttgaagga ggagtggcgc gtcaaggtgg gcgtcggcca ctcttcgccg
      361 gtcgtcgcgg gcgggcgcgt ctatcagttc gcgcggcagg gcgaggagga ggttgtagtc
      421 gcgctcgacc cggccacggg gaaagaaatt tggaggagcg ccggcgcggc cgcgccctac
      481 gagatgaacc cggcggcgcg cgaccacggc aaggggccga agtccacgcc ggtcgtcgcc
      541 ggaggccgcg tcttcacgct cggcataaac ggcgtgctct cggcgcacga cgccgcgacg
      601 ggccgcctcg tctggcggaa ggagttctcg aagcggttcc cctcgacctc gccgctctac
      661 ggcacggcca tgtcgccctt ggtcgagaag aatctcctca tcgcccacgt cggcggccac
      721 gacggcggcg cgctcacggc cttcgacgcg gccacgggca aggaggtatg gtcttacgcc
      781 ggcgacgggc cggcatactc ctcgcccgtc gtcttcacgg cgggcggcga gcggcaggtc
      841 gtcaccttca cgcagaagga gttggtcgcc gtctctgccg catcgggcaa gctgctctgg
      901 aagctcccgg ccaagacgca ctacgacacg aactgcaaca cgcccgtcgc ctacaaagac
      961 acactgatcg tctcgattga ggggcggggg ctggtggcgc tccggcccgt caagcagggc
     1021 gcgggctggg cggcgcagga ggtctgggct aactcggatg tggagcttta catgaacacg
     1081 ccggttctcg atggcgaccg gctcgtcggc ttctcggcgc gcaagaaggg gcagttcttc
     1141 gccgttgacg ccgccaccgg taagactctc tggcaggggc cggggcgcgc gggcgagaac
     1201 gcctcaatcc tgaacgtagg cggcgcgctt ctgctcctga cgaacgactc gacgatgttc
     1261 gtcctgtcgg cgggcgccaa aggcttcgag cccgccgcgc agtacgacgt ggcccagagc
     1321 ccgacgtggg cccaccccct cttcctcggc caccgcatac tcgtcaagga cgagacgacg
     1381 ctcgcctcgc tctcactgag gtgagcggcc ctcggccgtc tccgcgacca cgaactgcct
     1441 gtaatggtcg aagcgctcca gtatgtgtcc gacgtagttg acgggctcga tgccgcggca
     1501 gaagccgaac ttgaccaccg ggtctgtcga atactgctgc gttgactttt gcaggagcca
     1561 gtaggacacg tcgtcccacg cgcgcgtgtc gccgccgtac ttctcggtta gacggcgcgc
     1621 gtcctcgacg tggccggccc cgcagttgta tgacgcaagg atgaacttca gccgctcgcc
     1681 ctcgtcaggc acacgctccc gccagtattc gcccagccac ttgataaagc ggacggcgcc
     1741 gcggacgtta tcctcggggt cgagcgggtt ctgcacgccg aactctctgg ccgtgcgcgg
     1801 catgagttgg agcaggcccg tcgcgcccgc ccacgagcgc gcctcgggct tgaagcgcga
     1861 ctcctggaac gcctgcgagg ccagcagccg ccagtcccaa cccaactcgg ccgcgtactg
     1921 tcggagcagc ccgtcgtact ggcagagctt ccccgtggtc gaggtgaggt actcgctcgt
     1981 tacgcgctcg acgtggcgct tgcggtcggt gaaatatttt ttgtagagcg tgccgaagag
     2041 cgagccctgc ttctcctcgc cgatccagcg gttcagctct tcgagaagcg cgggcgagtt
     2101 cttcctgacg gcccaggaga ccgggtgcgt gcgaccgacg acgggcctga ccttcaagtt
     2161 cttgaactcg gcctccttca gctcggcgag gttgctctgc atgaccgtaa actccacctc
     2221 gccgcgcgcg accttctgcg ccagggcctc gtcctgaatc ttccccccga cctcgacgac
     2281 ctgaatgtcg cccgaaactt cgtcctcaag ctccaagagg gtgcggcggt aggcagactt
     2341 ctccggcagg tggacggtct cgcctgcgag ctgcgcgggg cgcgtgacga ggcgggcctc
     2401 tatttcaacg ggctccggct cgtcggcctc gggcggcggc tgtagcgcct tctcggccgc
     2461 ctccccggcc gcctcgggcg cggcctcctg ctgcacgagc gcgggctcag tccgatagag
     2521 cgggcgcgtg aaggagacgt tcgcctcgtc ctcgggcgta ggcacgaggc gcgcggcggc
     2581 aacgtcgccc gtcccctcgt tgagcatcgc gaggatgctc ttgcggtctg tgacgacgac
     2641 catcctgagc gcgagcccct gttcagaggc gaaggcgcgc agcaattcgt actcgtagcc
     2701 catcggctcg ccctggtgta tgaagtaggt ggtcgagttg tagggcgcga gcacggtgag
     2761 cgtgcggcgt cgccgtatct cttcgaggtc gcgctcgacg ggcgtcggca taggcacgcc
     2821 gacccttcgg tcaatcgtgt cgagcggctc ggagggctcc agcgcggggc gcgacgtgtg
     2881 ccggcggcac gagggcgaga gcgtcagaag gagcgcgaag agaagcgcga gcgaagtgag
     2941 ccgggatcgt ctgcgcatgg cggtcggtct gcgcacggcg ggccgagggg cggcgcgcgc
     3001 ctacgcgctt gcgggagaga gcatgaaagc ttttaagggg gctttaaggc gagagagttt
     3061 ttatgacaaa aacggcgggc agtcaatagc ggccgattag actaaccctc tgcgcctcag
     3121 tggcgagtga aacccgggtt tcactcgcca ctgaggcgca gaggaaagaa ctcggggcgc
     3181 ggctcgttag tcggcgagct tgtagcaggc catctgcgtc gcgttgcgga cgaggaggcg
     3241 gccgtccgcg atggcaggca cgttccacgt gcggccttcg agggcgctga agcgggcgac
     3301 ctccgcgtgc gcgccgggcg cggcgcgcac gagcgctacc tcgccctcct cggtcgtgat
     3361 gatgaggtgg ccgctggcta agacgacctg cccgtagccg tacccccgcg ccttccactt
     3421 cacctcgccc gtcgcaagct ccatgcagga gagcacgccc tcgtccagcc cgtaaacgtg
     3481 cccgtcgtgc agcaccgaag agttgaactt gttcttcatg cgcgggctct cccagacggc
     3541 ccgcgccgcg aggccgcgcc cggcgggcga gacttccacg agcgccgcgc ccttaccgta
     3601 gcccgccgag atgaagaagc ggttcgggcc ggcgacgatg ggctgcgaga cgtttatccc
     3661 cgccgagttc gaccagggga agccccacag caccgcgccg tcctcgggcg cgagccccgc
     3721 cacctgcccg cccgtgacga ccagaatctg cctgcggccc gcgagcgtga cgagcatcgg
     3781 ggaggtgtag gacgccgcgc cgctcatgga cttccaacgg agggcgcccg tcgccttgtc
     3841 gtaggctacg accgtgcggc cgttcgagcc gcccggcatc accacgacct tgtcgtcaac
     3901 gaccagcggc gacgcggcca tgccccactg caagttcgac gcgccgttct cggtcagaat
     3961 gttctttgac cagatggggc gcccgctgcg cgcgtcgagg caacgcagct cgcccgtggc
     4021 ccctagtgcg tatagacggc ccgagtccca cgtcggcgtc gagcgcgggc cgtcgcccgt
     4081 ctgctcgcgg aacacggcat tccagccgtg cgcccaaagc tcgcggcccg tctcgacctg
     4141 gtaggctgtt acgacctcct gcgagcgccg ctgctcgatg gtgtatgcga cgccgtcggc
     4201 gacggagaag gaggagtagc cgccgccgat gggctggcgc cagagaggcg cgaggccgcc
     4261 cgagggccag tcggtcttga cgggccgctc gtcgtatcgg ccgtcgcgcg ccgggccgcg
     4321 gaactgcgtc cagtagttac ggcgcgctct cccttgcgcg gcgggctgag agccgggctg
     4381 cgcggccgac gcctcgcctt gtgcggcccc ggccgccgcc tgctctccct gcgccggctg
     4441 ctgctcgccc gcgggctgct gctcggccgt ctgcgccaga gcggggtcgg ctggcggggc
     4501 ctgcttctgc tgctcggcgc ggtggcgttc gagcgcggcg tagtgcgctt cggtgttggg
     4561 gtcttcgcgc gagcctatga ggtatatgag cagtacgacg agcagcgcgg cggcgacgcc
     4621 gcccccggcg aagagcagcc cctgccacga gcgataccaa ggcttcggcg cgggcatctg
     4681 ttcgaacatg cgttttactc ctgtcgggaa aagggaaagg agggcgggcg cccgccctcc
     4741 acttttagac gcgccggggg cgcgagttgt tccctcaact tcggcccgcg ctcacttgcc
     4801 cggcttcgct atcgagtaca ggtgcttctc gccgcggatg aaaatcttgc catccgctat
     4861 cgcgggcgag
//
LOCUS       DASPKR010000744         7385 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_511383, whole genome shotgun sequence.
ACCESSION   DASPKR010000744 DASPKR010000000
VERSION     DASPKR010000744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 7385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7385)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7385
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511383"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1206
                     /locus_tag="VD968_19425"
     CDS             <1..1206
                     /locus_tag="VD968_19425"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HYE16619.1"
                     /translation="FQIIATDLDRIAQDRDERLARGQVERIGGEAIITFHASGREPLR
                     STAPVRDTRAAVEAIIRWVTSETSGIDTVKSVADIHAVGHRVVHGGERFTHSVLIDDE
                     VLRGIEDCIELAPLHNPANIRGIQAAREVFGAGLPQAAVFDTAFHQTLPDYAYLYALP
                     YQWYRRHRIRRYGFHGTSHRYVAYRYRKLRGLERGQTNVVTLHLGNGCSAAAIRAGDS
                     VDTSMGMTPLEGLVMGTRSGDIDPAIFDFIMAKEGLSAQEVDSVLNKQSGLIGISGLT
                     NDMRELLDEARESNDRRARLAIEIFCYRVRKYVGAYLAALGGADALVFTGGIGENSPE
                     IRSRVCEGLGWMGVELDEARNAGMVARREGLISREPSRLAVYVIPTDEELLIARDTVR
                     SVRGVPQRY"
     gene            1206..2111
                     /locus_tag="VD968_19430"
     CDS             1206..2111
                     /locus_tag="VD968_19430"
                     /inference="COORDINATES: protein motif:HMM:NF025701.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease complex subunit PrcB family protein"
                     /protein_id="HYE16620.1"
                     /translation="MNLRTVFVAALAALVLTDAAPVSCGGQGGRPRPPQNSNAGVKPT
                     PMPTPAEVSDMKVLAEGFYGKVEEPFLVVARSREVYAALRSLAEGLPDLGDEFFESGV
                     VVAGFLGTRNSGGYAVEITREGGGPVVVSEREPPKGSMTTMALTQPYKVVSVPLGESR
                     LEVEARGRWAGSLMRPYKVEAGEMEVSGGIAGRTASYGLEGSLSAARREGLVTLAFDL
                     RGAGAMRERVMKTVASGVVRGGGDFEMTNVDPGNLVEHPRSPVRVTGKLAGDRLTLDF
                     ETQPINIPDSFTGRGRLEAAAQGKP"
     gene            complement(2197..3483)
                     /locus_tag="VD968_19435"
     CDS             complement(2197..3483)
                     /locus_tag="VD968_19435"
                     /inference="COORDINATES: protein motif:HMM:TIGR02913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3466 family protein"
                     /protein_id="HYE16621.1"
                     /translation="MRHPNRPRPALVCLTVLCLLVAAAALRPRAGGAQVTSYTVTDLG
                     TLGGPESKAFGVNNSGRVVGHSQPAPGSSLPFAWMGGAMTNMNSFGGTDGGAAYAVNE
                     SGYAVGNAAVSNNNAHVFVWSDIFGKKDLGTLGGVFATAFDINDANQIVGQSEIGQLI
                     DRGFVWDSANGMRQITTLGGNSSAARGINNLGQIVGYSATRTGQTHAFLLSDGTMTDL
                     GTLGTGSLSFAYEINDAGQVVGYSTTSTGGISPVFHAFLYTKEGGMQDLGALPGTSGR
                     SVAYDINAGGEVVGYSEIARGVSRAFVWDSVNGMRDLNDLTAGSNWTLLEARSINNRG
                     QIVGFGTNPSGFLHAFLLTPVRDGPPADEPAPCITAQSAITLPAPAPVQLPNKNRKAL
                     PLSPRPFTRGTAGQGVSKRTGKGGTETQDFISEPEP"
     gene            complement(3724..5079)
                     /locus_tag="VD968_19440"
     CDS             complement(3724..5079)
                     /locus_tag="VD968_19440"
                     /inference="COORDINATES: protein motif:HMM:NF004426.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl ornithine aminotransferase family
                     protein"
                     /protein_id="HYE16622.1"
                     /translation="MSATSAPPKRPEIKTELPGPKGREIVEADATWVTPSYPRPAYKL
                     VAERASGVWVEDVDGNTFLDCNAGVAVCSTGHCHPEVVRAIQEQAASLIHMCGTDFYY
                     RHMPELARKLDEIVPVPSPTKTHFANSGTEAVETALKLAMHATGREKFIAFFNSFHGR
                     TLGSLSLTSSKVAQRTGFKRQLLDVVHVPYPNAFRHPFTGERTDGAAAAAASLDWIEN
                     RLFKTTTPPEEVAGIVVEAVQGEGGYVPAPKEFLDGLRRICDEHGMLLIVDEVQSGMG
                     RTGKMFACDHYGLKPDIITLAKGIASGLPMGACVARADLMDWKPGAHASTFGGNPVAI
                     AAALKTIELLERGLVANAAEVGEHLMAGLRKLAAKHDCIGDVRGMGLMVGVELVEAGS
                     LKPAPELRDRVEMECYNRGLILLGAGYNTIRWSPPLVLTRENADVALEIFDEAIAAAC
                     R"
     gene            complement(5253..6665)
                     /gene="cysS"
                     /locus_tag="VD968_19445"
     CDS             complement(5253..6665)
                     /gene="cysS"
                     /locus_tag="VD968_19445"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HYE16623.1"
                     /translation="MLRFYNTLTGRLEEFRPITEGEVRLYICGPTVWDYAHIGNFRSL
                     AVFGDLLRRYLKYKGYRLTHVMNITDIEDRIIKFSREQGKTIDEYTAKYIEALWEDFD
                     ALGAERPDVTPQATRHIPEMVDIIKRLEAKGHAYRSDGSYYYRIASFPEYGKLSKINF
                     AGNIVGGSERVDTDKYDKEDARDFALWKSQDDPAEPAWETELGKGRPGWHIECSAMSM
                     KYLGETFDIHAGGIDLVFPHHENEIAQSEGATGKQFARYWLHAEHLKVEGESMSKTRG
                     NYYTFRDLRDKGFDPTAIRYLLMSVPYNKQLNFTFDALRGAEKTVESLRTLRARLRDA
                     RTEPGSNPELKAVAARALEQFEAGMDDDLNTSVALAAVHDLKTEVNRALDGCTLRSDD
                     RADVLALIERFNSVLNIFPEGEPALLDEDIQRLIEERQQARHRRDFARADEIRDQLAS
                     RGITLEDTRDGVRWKRRGAQ"
     gene            complement(6744..>7385)
                     /locus_tag="VD968_19450"
     CDS             complement(6744..>7385)
                     /locus_tag="VD968_19450"
                     /inference="COORDINATES: protein motif:HMM:NF014788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HYE16624.1"
                     /translation="LIGGDTSRTPEGVTLDSIVLGEVRRGRAVLRSGARPGDLIFVTG
                     SLGGAAAGLRVLRERADSGARLTHARGELALRQTRPTPRVEWGMFLGESRLARAMIDL
                     SDGLSSDLAHLCRESRAGATVDAALLPLDPLLGHAVKTDDEALRLALDGGEDFELLFT
                     VSPRAASKLPEQLGGVPVTRIGEVTAEPGKLRLLRGGRARTLRPGGFEHFKER"
BASE COUNT         1146 a         2385 c         2588 g         1266 t
ORIGIN      
        1 ttccagataa tcgcgaccga cctcgaccgc atcgcgcagg acagggacga gaggctcgcc
       61 cgcgggcagg tcgagcgcat aggcggcgag gccatcatca ccttccacgc ctcggggcgc
      121 gagccgctgc gctctacggc gccggtgcgc gacacgcgcg cggcggtgga ggccatcatc
      181 cgctgggtca cgtccgagac ctccggcata gacaccgtca agagcgtcgc agacatacat
      241 gccgtcggcc atcgcgttgt ccacggaggc gagcgcttca cgcactccgt cctcatagac
      301 gacgaggtgc tgcgcggcat agaggactgc attgagctgg cgccgctgca caaccccgcg
      361 aacatacgcg gcatacaggc cgcgcgcgag gtgttcggcg cggggctccc gcaggccgcc
      421 gttttcgaca cggcgttcca ccagactctg cccgactacg catacctcta cgcgcttccc
      481 taccagtggt acaggcgcca ccggatacgc cgctacggct tccacggaac ctcgcaccga
      541 tacgtcgcct accgctaccg caagctgcgc ggccttgagc gcgggcagac gaacgtcgtc
      601 acgctccacc tcggcaacgg ctgctcggcc gcggccatac gcgcgggcga ctccgtggac
      661 acctcgatgg ggatgacgcc gctcgaaggg ctcgtgatgg ggactcgctc gggcgacata
      721 gacccggcca tctttgactt catcatggcg aaggaggggc tctcggcgca ggaggttgac
      781 tcggttctca acaagcagtc gggcctcatt ggcatctcgg gccttacgaa cgacatgcgc
      841 gagcttttag acgaagctcg cgagtcgaac gaccgccggg cgcggctcgc catagagatt
      901 ttctgctacc gcgtgcgcaa gtacgtgggc gcctacctcg cggcgctcgg cggcgcggac
      961 gcgctcgtct tcacgggcgg cataggcgag aactcgcccg aaatacgctc gcgcgtctgc
     1021 gaggggctcg gctggatggg ggtcgagctg gacgaggccc gcaacgccgg gatggtcgcg
     1081 cgccgcgaag ggctcatcag ccgcgagccc tcgcggctcg ccgtctatgt catcccgacc
     1141 gacgaggagc tgctcatagc gcgcgacacc gtgcgctccg tgcgcggcgt cccgcagagg
     1201 tactgatgaa tctcaggact gtattcgtcg ccgcgctggc ggcgctcgtg ctgacggacg
     1261 ccgcgccagt gtcttgcggc gggcaggggg gccgcccccg gcctccgcag aactcgaacg
     1321 cgggcgtgaa gccgacgccc atgccgacgc ccgcggaggt tagtgacatg aaggtgctcg
     1381 cggaaggttt ctacgggaag gtggaggagc ccttcctcgt cgtcgcgcgt agtcgcgagg
     1441 tttacgcggc gctgcgctcg ctcgccgagg ggctgcccga tctcggcgat gagttcttcg
     1501 agtcgggtgt ggtcgtcgcc ggcttcctgg ggactaggaa ctcgggcggc tacgccgtcg
     1561 agataacgcg cgaggggggt ggccccgtgg tcgtctcgga gcgggagccc ccgaagggct
     1621 ctatgacgac gatggcgctc acgcagccct acaaggtcgt gtcggtgccg ctgggcgaga
     1681 gccggctcga agtcgaggcg cgcgggcgct gggccggctc cctcatgcga ccctacaagg
     1741 tcgaggccgg cgagatggag gtgagcggcg ggatagcggg ccgcaccgcg agctacgggc
     1801 tcgaagggag tttgagcgcc gcgcggcgcg aggggctcgt gacgctcgcc ttcgacctgc
     1861 gcggggcggg cgcaatgcgc gagcgcgtga tgaagacggt cgcgagcggc gtcgtgcgcg
     1921 ggggcggcga cttcgagatg actaacgttg accccggcaa cctcgtcgag cacccccgca
     1981 gtcccgtgcg cgtcactggc aaactcgcgg gcgaccgact cacgctcgac ttcgagacgc
     2041 agcccataaa catccccgac agcttcaccg gccgcggccg cctcgaagcc gccgcgcagg
     2101 gcaaacccta acgtttgcta actagaaagc cgagagggtt gacgacagcc gtgccgtcgt
     2161 caaccctctt tctttaaccc gcgacccgaa atcctttcag ggctcaggct cggagatgaa
     2221 gtcctgcgtc tctgtgccgc ccttgcccgt gcgcttcgaa acgccctggc ccgcggtgcc
     2281 gcgcgtgaag gggcgcggcg agagcggcag cgccttccgg ttcttattgg ggagctgaac
     2341 cggcgcgggc gcgggcagcg tgatggcgct ctgcgcggtt atacaggggg ccggttcgtc
     2401 ggccggcggg ccgtccctga cgggcgtcag caggaaggcg tgcaggaagc cggacgggtt
     2461 cgtgccgaag ccgactatct gcccccggtt gtttatcgag cgcgcctcca gcagcgtcca
     2521 gttgctgccc gcggtcaggt cgtttaagtc gcgcatgccg ttcacgctgt cccagacgaa
     2581 ggcgcgcgac accccgcgcg ctatctccga atagccgacg acctcgccgc ccgcgtttat
     2641 gtcgtatgcg acgctgcggc cgctcgtgcc gggcagcgcg cccaggtctt gcatgccgcc
     2701 ctccttcgtg tagaggaagg cgtggaagac ggggcttata ccgccggtcg aggtggtcga
     2761 gtagccgacg acctggcccg cgtcgtttat ctcgtaggcg aagctgagcg accccgtgcc
     2821 gagcgtgccg aggtctgtca tcgtgccgtc gctcagcagg aaggcgtgcg tctgccccgt
     2881 ccgcgtggcc gagtagccga ctatctggcc gaggttgttt atgccgcgcg cggcgctgga
     2941 gttcccgccg agcgtcgtta tctggcgcat gccgttcgcg ctgtcccaga cgaagccgcg
     3001 gtctatgagc tggcctatct ccgactggcc gactatctgg ttggcgtcgt tgatgtcgaa
     3061 ggccgtggcg aagacgccgc cgagcgtgcc gaggtctttc tttccgaaga tgtcagacca
     3121 gacgaagacg tgcgcgttgt tgttggagac ggccgcgttg cctacggcgt agcccgactc
     3181 gttgacggcg taggcggcgc cgccgtcggt gccgccgaag gagttcatgt tagtcatcgc
     3241 gccgcccatc cacgcgaagg ggagcgacga gcccggcgct ggctgcgagt ggcctacgac
     3301 gcggccggag ttgttcacgc cgaacgcctt gctctccggc ccgcccagcg tgccgaggtc
     3361 tgtgaccgtg tagctcgtca cctgcgcccc gcccgcccgg ggccggaggg cggccgcggc
     3421 cacgagcagg cagagaaccg tcaggcacac gagcgccggg cgcggtctgt tggggtgacg
     3481 catttctaac tccttcatcc ttcgattcgg cgacggggga gtttgtcagg aatacactcg
     3541 aacgagacgg gcggctgcgg tgctcgcaga cagagactaa gcggccacgc gagactttaa
     3601 aggcgcgggg acggcaagtc aaatgcgatt tcggattgcg gaatagatga gggaagaggg
     3661 ctgacgacgg cgttgctgtc gtcaaccctc ttccttttat ctgcactccg aaatccgcaa
     3721 cgctcagcgg caggcggcgg cgatggcctc gtcgaaaatc tcgagggcca cgtctgcgtt
     3781 ctcgcgcgtt aggacgagcg gcggcgacca gcggatcgtg ttgtagccgg ccccgagcag
     3841 tatcaggccg cggttgtagc actccatctc gacccggtcg cgcagctccg gcgcgggctt
     3901 caaggagccg gcctcgacca gctcgacgcc gaccatcagc cccatgccgc gcacgtcgcc
     3961 tatgcagtcg tgcttggcgg cgagctttcg cagccccgcc atcaggtgct cgccgacctc
     4021 ggccgcgttg gcgacgagcc cgcgctctaa cagttcgatg gttttgagcg cggcggcgat
     4081 ggcaacgggg ttgccgccga aggtagaggc gtgggcgccc ggcttccaat ccatcaaatc
     4141 cgcgcgagcc acacacgcgc ccatcggcag gcccgaggct atgcccttcg ccagcgtgat
     4201 gatgtcgggc ttgaggccgt agtggtcgca cgcgaacatc ttccccgtgc ggcccatccc
     4261 cgactgcacc tcgtcaacga tgagaagcat gccgtgctca tcacaaatcc ggcgcaggcc
     4321 gtcgaggaac tccttcggcg cgggtacata gccgccctcg ccctgcacgg cctcgacgac
     4381 tatgcccgcg acttcttcgg gcggcgtggt cgtcttgaac aggcggttct ctatccagtc
     4441 gaggctcgcc gcggccgcag ccgcgccgtc cgtgcgctcg cccgtgaacg ggtggcggaa
     4501 ggcgttgggg taggggacgt gcacaacgtc aaggagctgg cgcttgaagc ccgtgcgctg
     4561 cgcgaccttc gacgaggtga gcgacaacga gccgagcgtg cggccgtgga agctgttgaa
     4621 gaaggctatg aacttctcgc ggccggtcgc gtgcatggcg agcttgagcg cagtctcgac
     4681 cgcctcggtg ccgctgtttg cgaagtgggt cttggtgggc gaaggcaccg gcactatctc
     4741 gtcgagcttg cgcgccagct ctggcatgtg gcggtagtag aagtcggtgc cgcacatgtg
     4801 tatgagggac gcggcctgct cctgtatggc gcggactacc tccgggtggc agtggccggt
     4861 agagcagacg gcgacgcccg cgttgcagtc gaggaaggtg ttgccgtcaa cgtcctcgac
     4921 ccagacgccc gaggcacgct cggccaccag cttgtaggcg gggcgcgggt aagagggcgt
     4981 gacccatgtg gcgtcggcct cgacgatctc gcggcccttc gggcccggca gttcggtctt
     5041 tatctccggt ctcttcggag gcgctgaagt tgcagacata aaaattctct cctttcggaa
     5101 ggcgcgaggg gttattcgat ttgaaggaaa atggcgcgcc gggaaggaga cggccggcta
     5161 gtccgcgaac aggtcggcgc gggcgtcgag cgggcggaag tgcggggacg gagaacagag
     5221 agtcataatc ttaaaacgcg gcgcagattc tatcactggg cgccgcggcg tttccagcgc
     5281 acgccgtcgc gcgtgtcttc gagcgtgata ccgcgcgagg cgagctggtc gcgtatctcg
     5341 tcggcgcggg cgaagtcgcg gcggtggcgg gcctgctggc gctcttcgat gagccgctgg
     5401 atgtcctcgt cgagcagcgc cggctcgccc tcggggaaga tgttgagcac ggagttgaag
     5461 cgctcgatga gcgctagcac gtcggcgcgg tcgtccgagc gcagcgtgca gccgtcgagc
     5521 gcgcggttca cctcggtctt gaggtcgtgg acggccgcga gcgccacaga cgtgttgagg
     5581 tcgtcgtcca tgcccgcctc gaactgttcg agagcgcgcg cggccacggc cttcaactcc
     5641 gggttcgagc cgggctccgt ccgcgcgtcg cgcaggcgcg cgcgcagcgt gcgcagcgac
     5701 tcgacggtct tctcggcgcc gcgcagcgcg tcgaaggtga agttgagctg cttgttataa
     5761 ggcacgctca tcagcaggta gcgtatggca gtagggtcga agcctttgtc gcgcaggtcg
     5821 cggaaggtgt agtagttgcc gcgcgtcttc gacatgcttt cgccctcgac cttcaggtgc
     5881 tcggcgtgca gccagtagcg cgcgaactgc ttgccggtcg cgccctccga ctgcgctatc
     5941 tcgttctcgt ggtgcgggaa gacgaggtca atgccgcccg cgtgtatgtc gaacgtctcg
     6001 ccgaggtact tcatggacat cgccgagcac tctatgtgcc agccggggcg ccccttgcca
     6061 agctccgtct cccaggcggg ctccgccggg tcgtcctgcg acttccagag ggcgaagtcg
     6121 cgggcgtcct ccttgtcgta cttgtccgtg tcaacgcgct cgctcccccc cacgatgttg
     6181 ccggcgaagt ttatcttcga gagcttgccg tactcgggga aggatgcgat gcggtagtaa
     6241 taggatccgt ccgaacggta ggcgtggccc ttcgcctcga gccgcttgat tatgtcaacc
     6301 atctcgggga tgtggcgcgt cgcctgcggc gtaacgtcgg gccgctcggc gccgagcgcg
     6361 tcgaagtcct cccagagcgc ctcgatgtac ttggccgtgt actcgtcaat agtcttgccc
     6421 tgctcgcgcg agaacttgat gatgcgatcc tcgatgtccg tgatgttcat cacgtgtgtg
     6481 aggcggtagc ccttgtattt gaggtagcgg cgcagcaggt cgccgaagac ggcgagcgag
     6541 cggaagttgc cgatgtgcgc gtagtcccag acggtcgggc cgcagatgta gagccttact
     6601 tcgccctccg tgatggggcg gaactcttcg agccggcctg taagagtgtt gtagaacctg
     6661 agcatctctc ctcgcgcctc tttcgggccc tggccttggg cgttgaaaag agtctaggca
     6721 aggggaggcg gccgcgtcaa acttcaccgc tctttgaagt gctcgaagcc gccggggcgg
     6781 agcgtgcgcg cgcggccgcc ccgaaggagc ctgagcttgc cgggctcggc cgtcacttcg
     6841 cctatccgcg tgacggggac gccgccgagc tgttccggga gctttgaagc ggcgcggggc
     6901 gagactgtga agagcagctc gaagtcctcg ccgccgtcga gggcgaggcg tagcgcttcg
     6961 tcgtcggtct tgacggcgtg gccgaggagc gggtcgagcg gcaggagggc ggcgtccacc
     7021 gtcgcgccgg cccggctctc gcggcagagg tgcgcgaggt cggacgagag gccgtcgctt
     7081 aagtcaatca tcgccctcgc gagtctgctc tcgcccaaaa acatccccca ctcgacgcgc
     7141 ggcgtggggc gcgtctgccg caaggcgagc tccccgcggg cgtgcgttag ccgtgcgccc
     7201 gaatcggcgc gctcgcgcag cacacgcagg cccgcggccg cgccccccag cgagcccgtc
     7261 acgaaaatca ggtcgccggg ccgcgcgccc gagcggagca cggcgcggcc gcgcctgact
     7321 tcgccgagca cgattgagtc gagtgtgacg ccctcgggag tgcgcgaggt gtcgccgccg
     7381 atgag
//
LOCUS       DASPKR010000745         3794 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1795950, whole genome shotgun sequence.
ACCESSION   DASPKR010000745 DASPKR010000000
VERSION     DASPKR010000745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3794)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3794
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1795950"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1426
                     /locus_tag="VD968_19455"
     CDS             <1..1426
                     /locus_tag="VD968_19455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16625.1"
                     /translation="AVTKRRAALLERIVLLFIPVYNVDGHERRGPFNRINQNGPAETG
                     WRANAMNLNLNRDYAKADAPETRSWLRLWDEWRPDLFIDCHVTDGADYRYNVTYQFEH
                     GDNVHPAVRAWSEEAFGRRILPAAERAGNLLSPYLSFRDNRDPARGVDALVTTPRLAT
                     GYAPVVRNRPALLIETHMLKPHRSRVRGTYDLLAAALEEVSRDPSSLLRAVRLADEET
                     AAHNPPKPLPLSLSLTDKPSQMMLKGWAMKITQSEVSGARRVEWDTARPLDTAIPFYS
                     ETVTAVSVTPPLYYIIPPQWKQVTELLAAHGLRLRRLREPATLEVESYRFREVKFALA
                     SFEGRVTVSSRAETVRERRAYPAGSVLVPLAQRDARAAVHLLEPEAPDSLVFWGFFNT
                     VFEQKEYAESYVLEKLAREMLERDAKLKREFERRLSEDPKFAASAQERLRFFYERSPY
                     WDRHLNLYPVGRVTSPLPPGVALD"
     gene            complement(1546..1692)
                     /locus_tag="VD968_19460"
     CDS             complement(1546..1692)
                     /locus_tag="VD968_19460"
                     /inference="COORDINATES: protein motif:HMM:NF033488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo0937 family membrane protein"
                     /protein_id="HYE16626.1"
                     /translation="MLWTILVVLLVLWLLGLIANIGGGLIHLLLVIAAVILVINLLTG
                     RRTV"
     gene            2258..>3794
                     /locus_tag="VD968_19465"
     CDS             2258..>3794
                     /locus_tag="VD968_19465"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYE16627.1"
                     /translation="MPFSRLSPRTQKLTAAVAGGSLLALLLAAAVVVKLHNGASQPVV
                     KEINYTQLRELSEREGAAASVTIQGETVTVTAADGSLSRAVVTSEAAQQLVAASFEKN
                     KAQVEFQTVKPPAIVTAFNYLLPLFTVSVLGFIGWRVYASMSVQGDFSPAEAKAGGEA
                     VTFADVAGVDEARSELAETIEFLRDPEKFGRLGGRPPRGILLSGPPGTGKTLLARAAA
                     NEARVPFLSVSGSSFQEKFAGLGASRVRKLFAKARAQAPCVIFIDEIDALGRKRGRGS
                     DSASADQDQTLNQLLVEMDGFERLSGVVVIASTNRPDILDSALTRPGRFDREITVNLA
                     DMRGREQILRVHARKLKLEEGLDLMWIARGTPGFSGADLANLLNEAAIAATRDGSEAI
                     GRPHVEYARDKILMGVEREGFMMDEEERYATAVHEAGHVAVGLAVKNADPIHKVSILP
                     RGRALGVTQSLPERDRLMKKREYLEDQIAILLGGRAAEMLLLDTMTAGASNDIERAVE
                     IARR"
BASE COUNT          654 a         1336 c         1190 g          614 t
ORIGIN      
        1 cgccgtcacg aagcggcgcg ccgcgctcct cgagcgaatc gtcctcctct tcatccccgt
       61 ctataacgtg gacggccacg agcggcgcgg ccctttcaac cgcatcaacc agaacggccc
      121 cgcggagacg ggctggcgcg cgaacgccat gaatctgaac ctcaaccgcg actacgctaa
      181 ggccgacgcg cccgagacgc gctcttggct gcgcctctgg gacgagtggc ggcccgacct
      241 cttcattgac tgccacgtga ccgacggagc cgactaccgc tacaacgtca catatcagtt
      301 cgagcacggc gataacgtcc acccggccgt gcgcgcgtgg tctgaagagg cgttcggccg
      361 gagaatcctg ccggccgccg agagggccgg gaacctgctc tcgccttacc tctccttccg
      421 cgacaaccgc gaccccgccc ggggcgttga cgcgctcgtc acgacgccgc ggctcgcaac
      481 cggctacgcg cccgtcgtgc gcaaccgccc ggccctcctc atcgagacgc acatgctcaa
      541 gccccaccgc tcgcgcgtgc gcggcacata cgacttgctg gccgccgccc tcgaagaggt
      601 cagccgcgac ccctcgtcgc tccttcgcgc cgtgcgactc gccgacgaag agaccgccgc
      661 gcacaaccct ccaaagcccc tgcccttgag cctgagcctg acggacaagc cttcgcagat
      721 gatgctgaag ggttgggcga tgaaaatcac acagagcgaa gtctcgggcg cgcggcgcgt
      781 cgagtgggac acggcgcggc cgctcgacac cgccatccct ttctactccg aaaccgtcac
      841 ggccgtctcc gtcacgccgc cgctctacta cataatcccg ccgcagtgga agcaggtcac
      901 ggaactcctt gcggcgcacg gcctgcggct tcggcgtctg cgcgagcccg cgacactcga
      961 agtcgagagc taccgcttcc gcgaggtgaa gttcgcgctc gcatcgttcg aggggcgcgt
     1021 gaccgtgagt tcccgcgccg agaccgtgcg cgagcgaagg gcttaccccg ccggctccgt
     1081 gctcgttccg ctcgcgcaga gggacgcgcg agcggccgtg cacctgttag agcccgaggc
     1141 gccggactcg ctcgtcttct ggggcttctt caacacggtc ttcgagcaga aggagtacgc
     1201 cgaaagctac gtgctcgaaa aactcgcccg cgagatgctg gagagggacg cgaagctaaa
     1261 gcgggagttc gagcggcgcc tctcggaaga cccgaagttc gccgcgagcg cgcaggagag
     1321 gctgcgcttc ttctacgagc ggtcgcccta ctgggacagg catttgaatc tctacccagt
     1381 cgggcgcgtc acgtcgccgc tcccgccggg cgtagcgctc gactgaagcg ggcggcaagt
     1441 taaagggcgg cttagcagtc tcccggccga ggcccacgcg ggggccacga aagccggcgg
     1501 actgcgaagc cgccctcgaa gttgatccgc ccgtccggct tacgcttaga ccgtgcggcg
     1561 ccccgtcaag aggttgatga cgaggatgac cgccgcgatg accagcagca ggtgaatcag
     1621 cccgccgccg atgttagcta tcaggccgag gagccagagc accagaagca ccaccagaat
     1681 agtccacaac attttcgcat tctccttctg tccaaagtca taaactgtcg gctcgaggtt
     1741 tatccaaccc gcccgcgccg tcattgtgca acggccatgc cagcacgctc cgccgcccca
     1801 gaaactcacc aaaacccttg taaatttacc tgtttttcgc ctccgcgtta ggcacagcgc
     1861 cgtgcggctc ggcccggttt tgtatcgaaa tacgccgccg cgcccgaatc tttcatgtcc
     1921 gaatacaggg caaggcgcgg cgcgctcacg cccgcggcaa ccgggcggcc cccgttttca
     1981 tcggacaggc gtcgggcagt cggcggtttg tttgaaacgt aaggggccgg aaggcggcgg
     2041 gcttttccgc tggacttgaa aagcgcgggg ctgttagagt gttagcgcgt cggttgtcgc
     2101 gcccggcccc ttcacgcgcg agttccgaac ccggtaaaac ctttagcgaa tctgccggcc
     2161 ttcgctcggc ccttctgagg cggtctctcg ccgaatcaga aattaaattt gaaattgctt
     2221 cccccgaccc cttcggattt tcgtcgtcga ggtgtttatg cctttttccc gcttgtcccc
     2281 ccgcacgcag aagttgacgg ccgccgtggc aggcggttcg cttctggcgc tgctgctcgc
     2341 ggccgcggtc gtcgtaaagc tccacaacgg cgcgagccag cccgtagtca aagagattaa
     2401 ctacacgcag ctccgcgagc tgtcggagcg cgagggggcc gcggccagcg tcactattca
     2461 gggcgagacc gtaacggtga cggccgccga cggctcgctc tcacgcgccg tcgtgacgag
     2521 cgaggccgcg cagcagttgg ttgccgcctc cttcgagaag aacaaggcgc aggtcgagtt
     2581 ccagaccgtc aagccccccg caatcgtcac ggccttcaac taccttctgc ctctcttcac
     2641 ggtctcggtg ctgggcttca tcggctggcg cgtctatgcg agcatgagcg ttcagggcga
     2701 tttcagcccg gccgaggcga aggccggcgg cgaggccgtc accttcgccg acgtggccgg
     2761 cgtggacgag gcccgctccg agcttgccga gaccatcgag ttcctccgcg accccgaaaa
     2821 gttcgggcgc ctcggcggcc ggcccccgcg cggcatactg ctctccggcc ctccggggac
     2881 ggggaagacc ctgctcgcgc gcgcggccgc caacgaggct cgcgtgcctt tcctctccgt
     2941 ctcaggctcg agctttcagg agaagttcgc cggccttggc gcctcgcgcg tccgcaagct
     3001 cttcgcgaag gcgagggcgc aggctccctg cgtcatcttc attgacgaga ttgacgcgct
     3061 gggccgtaag cgcgggcgcg ggagcgactc ggcctcggcc gaccaggatc agactctcaa
     3121 ccagctcttg gtcgagatgg acgggttcga gcgcctgagc ggcgtcgtcg tcattgcatc
     3181 cacgaaccgg cccgacatac tcgactcggc gctcacgcgc ccaggccgat tcgaccgcga
     3241 gataaccgtc aacctcgcgg acatgcgcgg gcgcgagcag attctgcgcg tccacgcgcg
     3301 caagctgaag ctggaagaag ggctggattt gatgtggatt gcgcgcggca cgcccggctt
     3361 ctccggcgcc gacctcgcga acctcctgaa cgaggccgcc atcgcggcga cgcgcgacgg
     3421 ctccgaggcc atcggccgcc cgcacgtcga gtacgcgcgc gacaaaatcc ttatgggcgt
     3481 cgagcgcgag ggcttcatga tggacgagga ggagcgttac gcgacggccg tccacgaggc
     3541 gggccacgtc gccgtcggcc tcgccgtcaa gaacgcagac cccatccaca aggtctcgat
     3601 actcccgcgc ggccgcgccc tcggcgtcac gcagtcgctc ccggagcgcg accgcctgat
     3661 gaagaagcgc gagtacctcg aagaccagat agccatcctc ctcggcggcc gcgccgccga
     3721 gatgctcctg ctcgacacga tgacggccgg cgcgtcgaac gacatagagc gcgccgtcga
     3781 gatagcgcgc cgga
//
LOCUS       DASPKR010000746        10606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1282805, whole genome shotgun sequence.
ACCESSION   DASPKR010000746 DASPKR010000000
VERSION     DASPKR010000746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 10606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10606)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10606
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1282805"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..456)
                     /locus_tag="VD968_19470"
     CDS             complement(<1..456)
                     /locus_tag="VD968_19470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16628.1"
                     /translation="MSRQNHTTPRRGLRARLGTLLRDSRWLIALELAVALAILAAHLA
                     GLMPLSEIPALLALGWLSLWARGVGWRGVGLKRPASWGRALAVGAAVGAGLQFFIAYV
                     LEPLVVRLMRQPVDLSQFAAVRGNLVVLGILLLLVWTLAAFGEEMVYRGY"
     gene            complement(453..1148)
                     /locus_tag="VD968_19475"
     CDS             complement(453..1148)
                     /locus_tag="VD968_19475"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE16629.1"
                     /translation="MSASMRQVREEFDRIALLTEREGGRGAGDIYYDHLLRLLPPRPE
                     NVLEVGCGAGAFTRLLASRARSVTALDLSPEMIRLARLQSAGRDNVEHVLGDFMQLSV
                     PAEGFDCVVSIATLHHLPLAPALLKMKGALKPGGVLVINDLVADGGLADSCLSALAWP
                     VSAAQRFLKTGRPRMPREVREAWAEHGRNEPYLTMAGVREMCREHLPSARVKRHVLWR
                     YTVVWCKHAGVAE"
     gene            complement(1153..1968)
                     /locus_tag="VD968_19480"
     CDS             complement(1153..1968)
                     /locus_tag="VD968_19480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16630.1"
                     /translation="MKWPFKSRPKEPTPDKLLLRALIDDAELCSVSSSELPVERLPVA
                     ELSAGSRLHFLDSAGAARSFDLSSAFDEGGRFLHLSVRVSPKFVVQSDGVVTKSRDED
                     PRGAFDRGEKGLRFQPFMLPEFSGTGDDLAGKGLFYRGLHFPGTITPGNVSAMCICDY
                     CGKSFRLQSFHAGFADLVYFYCSGAPHTLVASSYLEDAPPVLGEADADALERFESRLP
                     RCERGQCNGAFRYLNPLRCPHCLRPYIDFEKYPKEREKEYYGNHLYGDSLQGF"
     gene            complement(2170..5562)
                     /locus_tag="VD968_19485"
     CDS             complement(2170..5562)
                     /locus_tag="VD968_19485"
                     /inference="COORDINATES: protein motif:HMM:NF038113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T9SS-dependent M36 family metallopeptidase"
                     /protein_id="HYE16631.1"
                     /translation="MIRPLLIICFVALAAAALFFTGATPTGDAGAQNAPAAQVALRYV
                     VEHRQELGLTQADVADIAVTDAYTSGHTGVSHVYLRQRYQGVEVYGAVINVNVAKDGT
                     VLSRGSDFVPNLASAVNTTTPAIDAVAAALAAAEAVNLSPIEPLKVESAPGGASRAVL
                     LSKGGISRSRIPVKLVYQPVGNAVRLAWDVEIEELSQQHWWSLRVDAQTGELLSQDDY
                     VDHDNFAPGGEAAGAPSGNSTGTTAASQSAAASSSFQGVQDGSSYRVFAHPIESPNHG
                     ARSLAEGAADALASPYGWHDTNGADGPEFTITRGNNAHAYADTVGDGLPDPLSEPDGG
                     SGLDFDFPLDFSREPLEYRPAAVTNLFYWNNIIHDVFYRYGFDEKSGNFQANNYGRGG
                     AGNYYVQAQAQDGTPNGASAPLNNANFGTPVDGSRPTMQMYLWQPPYPNRVTVQAPSP
                     AAGAYDATDAQFGAPVPPVGLTGNVVLVNDNVGTKTDACEPLVGFPAGSIALLERGGC
                     SFTIKVLNAQNAGAVAAILHNNVPGGPAIRLGFATTPTPDTNAALVAIPSVMISYNDG
                     HKLRANLPLTANVARKTESDRLRDGDFDSGVITHEYGHGISNRLTGGPSNVSCLRNQE
                     QMGEGWSDFLGLALTAREGDTPEQRRGVGTYVLYQPADSFGIRPTPYSTDMATNPATY
                     DGVKTAAVPHGVGYIWASMLWEVYWNLVAEHGFNPDIRGDWTTGGNNLAIQLVMDGMK
                     LQKCSPGFVDGRDAILLADQALTGGANQCSIWKGFAKRGLGVSAVQGSSASVTDGTQA
                     FDIPAACQAGIAVNPPAMTAAQIPGSTTQQELGIQNGSLGGGTALQWTITEAATDCNS
                     PSDLPWLGVSSASGTTAPGQQSGITVTFNSAGMPVPGSLTGKLCVASNDSARPLVTVP
                     VTLTTIYDFQGFSGLPAPPAFANAVPGSYVSLGFSLGGDRGLNIFADGSPTSVEVDCF
                     TAAQIGAPEPVLTGGTSGLSYSAANNRYTYRWRTQGDWPYGSCREFTMQLNDGTTHRA
                     LFRFANGVQSLTLSPKTVTGGGSSTGTVKLLAPAPQGGMVVKLRSGNTNVARVPATMT
                     VPEGQTTGTFTITTSEVTASSTSLIRAEANGLAKNVSLSVVP"
     gene            5805..6686
                     /locus_tag="VD968_19490"
     CDS             5805..6686
                     /locus_tag="VD968_19490"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE16632.1"
                     /translation="MVNYRPAGEEDVAGAVEVFVEAVGDLYARNGVTTAPPPDRRTIE
                     QNYRHILRTGIFHVAEAEGRVAAICHAVVRGPVWFLSGFWALPSLQRQRIGGAMLRRV
                     MEEGAAAGATVFFTWSSIDLTAMAAYMKAGMLPGYQILTFSGRLPEETAGPDGATEIE
                     SQPLTISSAAALDERVRAARREVDHEFWLSEVGLRARQLVKGGKVVGYFYLNGAAVGP
                     AAWDEELGAEALLAAACRELRGRSEEVRLMAPGVNHDAIRFALGRGLRLVAFSHLLTT
                     SPFGRMERYLPSGPSLF"
     gene            6810..7466
                     /locus_tag="VD968_19495"
     CDS             6810..7466
                     /locus_tag="VD968_19495"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="PEP-CTERM proteins occur, often in large numbers,
                     in the proteomes of bacteria that also encode an
                     exosortase, a predicted intramembrane cysteine proteinase.
                     The presence of a PEP-CTERM domain at a protein's
                     C-terminus predicts cleavage within the sorting domain,
                     followed by covalent anchoring to some some component of
                     the (usually Gram-negative) cell surface. Many PEP-CTERM
                     proteins exhibit an unusual sequence composition that
                     includes large numbers of potential glycosylation sites.
                     Expression of one such protein has been shown restore the
                     ability of a bacterium to form floc, a type of biofilm;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HYE16633.1"
                     /translation="MPNLLRHFLPAFAALAVLAAAEPALADEVVLRTDNGVGLSNVVG
                     GTNNASFTYGSGADTVTVSVVSRNNLQTPFTTLSMAFGSGQSVLTDFGVINVSFTGNG
                     ATLPAEATLVVNVLQLSPPTSQFGNVQGRFVGAISGTLSPTTNTLVVNFDQTSTTFFT
                     NANDRFIYSLLSGQMSLSVGSNVIGARVTSPVPEPATLLLLGTGLAGAAAARRRRKNS
                     "
     gene            7616..8470
                     /locus_tag="VD968_19500"
     CDS             7616..8470
                     /locus_tag="VD968_19500"
                     /inference="COORDINATES: protein motif:HMM:NF015000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HYE16634.1"
                     /translation="MLGAVYGSLALTKGVPARDHAFFARDGAGRPLVIAHRGGAGLWP
                     ENTLHAFERALAAGADIIETDVRATSDGALVLMHDERVDRTTDGSGRVADMTLEELRR
                     LDAGHRWTPDGGRTFPFRGRGLRVPTLDEVFKALGGAARFNIEPKQASAPVVQRLCAL
                     VREHGAAERVVVASFSDSVLEEFRRSCPEVATSASPSEAWAFLAMYEAGLAGSYSPPM
                     HALQVPERAGGVRVLTRGFVEAAHGRNLKVHAWTVNSEEDMRRVLAAGVDGVMTDYPD
                     RLLKLLGR"
     gene            complement(8503..10005)
                     /locus_tag="VD968_19505"
     CDS             complement(8503..10005)
                     /locus_tag="VD968_19505"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HYE16635.1"
                     /translation="MPTRSFLAPALSAFVCLSLLAGAAAQTKQTQQAQHGGPHSSGHA
                     QVVADFQARVKEYQTLREQIERKLPKLPKESTPEQIEQHKVVFQERVRSARAGARHGD
                     VFTPAAAEHIRAVIKTALDAQEKQEVRQTVFEAETKGVPLRVNYAYPESRELVEMSPT
                     LLMKLPQLPKQLRYRFVGRNLLLVDRENGLIVDYMTDALPGAGEPKPPTAAESGEAVG
                     ARVAAKATAPASALMLTLPNKEDSVRFVVIGDTGTGTPQQKQLADVMTTYRGAFPYEF
                     VLMMGDNMYGGEKAADFRKKFEDIYKPLLDSKVTFYATLGNHDESNQRFYDHFNMKGE
                     EYHRFKKGDVAFYCLNSNYMDKKQVSWLEGELAKDGSRWKVAFFHHPPYSSGGKHGSS
                     TGLREIVEPIFVKYGVDVVFAGHEHFYERIKPQKGIHYFISGAGGKLRPGDVKENSPL
                     TEKAYDADMSFMLIEVAGDEMHFQVINRLGKTVDSGVIKSRRAAAKAASN"
     gene            10295..>10606
                     /locus_tag="VD968_19510"
     CDS             10295..>10606
                     /locus_tag="VD968_19510"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE16636.1"
                     /translation="MKALVIDDNELVRGNVAEVLRADGWEVSEAESAEGAFEKLGDER
                     WSLVFCDVKLSAKSDAEGYAVLRRFVEVQPDAQIVLMTGHASAAGALDAVSMGAYDYL
                     MK"
BASE COUNT         1649 a         3486 c         3662 g         1809 t
ORIGIN      
        1 gtagccgcga tagaccatct cctcgccgaa ggccgcgagc gtccagacca gcagcagcag
       61 tatgccgagc acgacaagat ttccgcggac ggccgcgaac tggctcaggt caaccggctg
      121 tctcatcagg cgcacgacga gcggctccaa gacgtatgcg atgaagaact gtaacccggc
      181 ccccacggcc gccccgaccg ccagcgcgcg cccccagctc gccggccgct tcaacccgac
      241 gcctcgccag ccgacgccgc gcgcccacag agagagccag cccagggcga ggagcgccgg
      301 tatctcactc aacggcatta agcccgcgag gtgcgcagcc agtatggcga gggcgacggc
      361 cagctcaagg gcgatgagcc acctgctgtc gcgcagtaga gttccgaggc gagcccggag
      421 gccccttcgc ggagtcgtgt gattttgccg gctcattccg cgaccccggc gtgcttacac
      481 cagacgaccg tgtagcgcca cagcacgtgg cgcttgacgc gggccgaagg taagtgctcc
      541 ctacacattt ccctgacccc ggccatagtt aagtagggct cattcctgcc gtgctcggcc
      601 caggcctccc tgacctcgcg cggcatccgc ggccgccccg tcttcaagaa tcgctgcgcc
      661 gcgctcacgg gccacgcgag cgcgctcagg cacgagtcag cgagcccccc gtcggcgacg
      721 aggtcgttga tgacgagcac gccgcccggc ttgagcgcgc ccttcatctt cagcagagcc
      781 ggagcgagcg ggaggtgatg cagcgtggcg attgacacga cgcagtcgaa gccttcggcc
      841 gggacggaga gttgcataaa gtcgccgagc acgtgctcga cgttatcgcg gccggccgac
      901 tgtaatctcg cgagtcgaat catctcaggg gagaggtcga gggccgtgac gctgcgcgcg
      961 cgggaagcca ggagccgcgt gaacgccccc gcgccgcagc cgacctccaa cacgttttcg
     1021 gggcggggcg ggagaaggcg caggaggtgg tcgtaataaa tatcgcccgc accgcggccg
     1081 ccttcccgct cggtcagcag ggcgattcga tcaaactcct cacgcacttg gcgcattgac
     1141 gcgctcatac tcttaaaatc cttgtagcga gtcgccgtag aggtggttgc cgtagtactc
     1201 cttttcgcgc tccttggggt atttttcaaa atcgatgtac gggcgcaggc aatgggggca
     1261 gcggagcggg ttcaagtacc ggaaagcgcc gttgcattgc ccgcgctcgc accgtggcag
     1321 gcggctctcg aagcgctcga gcgcgtcggc gtccgcctcg cccagcacgg gcggcgcgtc
     1381 ttcgaggtag ctgctcgcga ccagcgtgtg cggcgcgccg gagcagtaga agtaaaccag
     1441 gtcggcgaag cccgcgtgga acgactgtag ccgaaagctc ttgccgcagt agtcgcagat
     1501 gcacatcgcg gaaacattcc ccggtgtgat agtcccaggg aagtgaaggc cgcggtagaa
     1561 aagccctttc ccggccaggt cgtcccccgt gccgctgaac tccgggagca tgaagggctg
     1621 gaaccgtagc cccttttcgc ccctgtcaaa agccccccgc gggtcttcgt ctctgctttt
     1681 ggtgacgacg ccgtccgact gcacaacgaa cttcggcgag acgcgcacgg acaggtgaag
     1741 aaagcgcccg ccctcgtcga acgcggaaga cagatcaaag gagcgggcgg cgccggcgct
     1801 gtcgagaaag tggagacggg agccggcact cagttccgcg accggcagcc tctccacggg
     1861 aagctctgac gaggagacgg agcacagctc ggcgtcatca atcagggcac gcagaagcag
     1921 cttgtcgggc gtaggctcct tagggcgaga tttaaacggc cacttcacaa accctcccca
     1981 ctcgctacgc ctcttcaacc caaggttgat tataaactgc aagcgtggca acttcgtata
     2041 gcttgacggc taaattaagg tgctcgctcg gggccgcgcc tttacgcccg gcccgcgcct
     2101 aatggataaa acgctaaagg ccacccgctc gggtggcctt tagcgtttta ggcgcaggag
     2161 cccgtgcctc tatggcacga ccgacagcga tacgttcttg gcgagcccgt tcgcctcggc
     2221 ccttatcagc gacgtgctgc tcgccgtcac ctccgaggtc gtgattgtga acgtccccgt
     2281 cgtctgcccc tcgggcacgg tcatcgtcgc ggggacgcgc gcgacgttcg tgttgccgct
     2341 cctgagcttc acgaccatcc cgccctgcgg cgccggcgcg agcagcttaa ccgtccccgt
     2401 ggacgagccg ccgcccgtga ccgtcttggg cgagagcgtg agcgactgca cgccgttggc
     2461 gaagcggaac agcgcgcggt gcgttgtgcc gtcgttcagt tgcatggtga actcgcggca
     2521 gctcccgtag ggccagtccc cttgagtccg ccagcggtac gtgtagcggt tgttggcggc
     2581 cgagtagctg agcccgctcg tcccgcccgt cagcaccggc tcgggcgcgc ctatctgggc
     2641 cgcggtgaag cagtcaacct ctaccgaagt cggcgagccg tccgcgaaga tgttcagccc
     2701 gcggtcgccg ccaaggctga agcccagcga aacatacgag cccggcacgg cgttggcgaa
     2761 ggccggcggg gccggcagcc ccgagaagcc ctggaagtcg tagatggtcg tgagcgtgac
     2821 ggggactgtg acgagcggcc gcgccgagtc gttgctcgcc acgcacagct tgcccgtgag
     2881 cgagcccggc acgggcatgc ccgccgagtt aaacgtcacc gtgatgcccg actgctgccc
     2941 cggcgccgtc gtgccgctcg ccgaagagac gcccagccac ggcaggtcgg agggcgagtt
     3001 gcagtccgtg gccgcctccg taatcgtcca ctggagcgcg gtgcctccgc cgaggctccc
     3061 gttctgaatg cccaactcct gctgtgtggt cgagcccggt atctgcgccg ccgtcatggc
     3121 cggcgggttg actgcgatgc cggcctggca cgcggccggg atgtcgaagg cctgcgtgcc
     3181 gtcggtcacg ctcgccgagc tcccctgcac ggcgctcacg ccgagcccgc gcttggcgaa
     3241 gcccttccat atggagcact ggttggcgcc gcccgtcaga gcctggtcgg cgaggaggat
     3301 ggcgtcgcgg ccgtcaacga agccggggct gcacttctgc aacttcatgc cgtccatcac
     3361 gagctgtatg gcgaggttgt tgccgcccgt cgtccagtcg ccgcggatgt ccgggttgaa
     3421 gccgtgctcg gcgacgaggt tccagtaaac ctcccacagc atcgaggccc agatgtagcc
     3481 gacgccgtgc ggcacggccg ccgtcttgac gccgtcgtag gtggccgggt tggtcgccat
     3541 gtccgtcgag tagggcgtgg ggcgtatgcc gaagctgtcg gcaggttggt agaggacgta
     3601 cgtgcctacg ccgcggcgct gctcgggcgt gtcgccctcg cgcgccgtga gcgcgagccc
     3661 gaggaagtcg ctccagccct cgcccatctg ctcctggttg cgaaggcagc tcacgttcga
     3721 cgggccgccc gtcaggcggt tgctgatgcc gtggccgtac tcgtgtgtga tcacgccgct
     3781 gtcgaagtcg ccgtcgcgca gccggtcgga ctccgtcttg cgcgcgacgt tggccgtgag
     3841 cggcaggttg gcgcgcagct tgtggccgtc gttgtaggag atcatcaccg acgggatggc
     3901 gacgagcgcg gcgttcgtgt cgggcgtggg cgtcgtggcg aagcctagcc tgatggccgg
     3961 cccgcccggc acgttgttgt ggagaatggc ggcgacggcg ccggcgttct gcgcgttcaa
     4021 gaccttgatt gtgaaggagc agccgccgcg ctcaaggagc gcgatggagc cggcggggaa
     4081 gcctacgagc ggctcgcagg cgtcggtctt agtaccgacg ttgtcgttga cgagaacgac
     4141 gttgccggtc agccccacgg gcgggacagg cgcgccgaac tgcgcgtcgg tcgcgtcgta
     4201 ggcgccggcc gcgggcgagg gcgcctgcac agtgaccctg ttcgggtagg gcggctgcca
     4261 caggtacatc tgcatggtcg ggcgcgagcc atcaaccgga gtgccgaagt tcgcgttgtt
     4321 caagggcgcg ctggcgccgt tgggcgtccc gtcctgcgcc tgggcctgaa cgtaatagtt
     4381 gcccgcgccg ccgcgcccgt agttgttcgc ctggaagttg cccgacttct cgtcgaagcc
     4441 gtagcggtag aacacgtcgt ggatgatgtt gttccagtag aagaggttcg tgacggccgc
     4501 cgggcggtac tcgagcggct cgcgcgagaa gtcgagcggg aagtcgaagt cgaggccgga
     4561 gccgccgtcg ggctcgctca agggatcagg caagccgtcg ccgacggtgt ctgcgtaggc
     4621 gtgcgcgttg ttgccgcgcg tgatggtgaa ctcggggccg tcggcgccgt tcgtgtcgtg
     4681 ccagccgtag ggcgatgcga gcgcgtcagc cgcgccctcg gcgagcgagc gagcgccgtg
     4741 gttcgggctc tcaatcgggt gcgcgaagac gcggtaggac gagccgtcct gcacgccttg
     4801 gaacgaagac gacgcggccg ccgactggct cgcggccgtc gtgccggtcg agttgccgga
     4861 cggggcgcct gccgcttcgc cgccgggggc gaagttgtcg tggtcaacgt agtcgtcctg
     4921 cgagagcagt tcgcccgtct gcgcgtcaac gcgcaggctc caccagtgct gctgcgaaag
     4981 ctcctcgatc tcaacgtccc aggcgagccg cacggcgttc ccgaccggct gatagacgag
     5041 cttgacgggg atgcggctgc gagagatgcc gcccttcgag agcaggacgg cgcgcgaggc
     5101 gccgcccggc gcgctctcga ccttgagcgg ctcgatgggg ctgaggttga cggcctcggc
     5161 cgcggcgagc gcggccgcca cggcgtcaat cgcgggcgtc gtcgtgttca cggccgacgc
     5221 gaggttaggc acgaagtcgg agccgcggct cagcaccgtg ccgtccttcg cgacgttgac
     5281 gttgatgacg gcgccgtaaa cctctacgcc ctggtaacgc tgccgcagat agacgtggct
     5341 gacgccggtg tgcccgctcg tgtaggcgtc ggtgacggcg atgtcggcca cgtcggcctg
     5401 cgtcaggccc agctcctgcc ggtgctctac gacgtagcgc agagcgacct gcgccgccgg
     5461 cgcgttctgc gccccggcgt cgcccgtggg cgtggcgccc gtgaaaaaga gtgcggccgc
     5521 cgccaaggcg acgaagcaaa taatgagaag gggcctgatc atcttctttc ctccggcgtg
     5581 tcgtgtctgg tgttgccacg ttacagtgcg tgcaggactg aaagcgacgc gtacaggata
     5641 aggatgtggg ttgaggaatt cttgagagcc gcttgaggcg gggcgggcgc ccccccgcgg
     5701 cggcgggagc gggcggggca tgtcgttgaa attaaatgtg atcaggttgc gccggcgcgc
     5761 ccggcgcggg tatgtttggt gacgaaaatt ttcggggggc tgggatggtc aattacaggc
     5821 cggccggtga ggaagacgtg gcgggggcgg tcgaggtgtt cgtcgaggcc gtaggcgacc
     5881 tctacgcgcg caacggcgta acgaccgcgc cgccgcccga ccggcgcaca atcgagcaga
     5941 actaccgcca catacttcgg acgggcatat tccacgtcgc cgaagccgag gggcgcgtcg
     6001 ccgccatatg ccacgccgtc gtgcgcgggc cggtatggtt cctctcgggc ttctgggcgc
     6061 tccccagttt gcagcggcag agaatcgggg gcgcgatgct gcgccgcgtc atggaggagg
     6121 gcgccgcggc cggagccacg gtcttcttca catggtcttc gatagacctg acggcgatgg
     6181 ccgcctacat gaaggccggg atgctgcccg gctatcaaat cctcaccttc agcggccggc
     6241 tgcccgaaga gacggccggg cctgacggcg ccaccgagat cgagtcgcaa ccgctcacga
     6301 tctcttctgc cgcggcgctg gacgagcgcg tgcgcgcggc tcgcagggaa gtggatcacg
     6361 aattctggct ctcggaagtc ggcctacgcg cgcggcagtt ggtgaagggc gggaaggttg
     6421 tgggctactt ctacctgaac ggcgcggcgg tcggccccgc ggcgtgggac gaagagttgg
     6481 gcgccgaggc gctgcttgcg gcggcctgcc gcgagttgcg gggacgctcc gaagaggttc
     6541 gactgatggc gccgggcgta aaccacgacg ccatacgctt cgcgctcggg cggggactgc
     6601 ggctcgtagc cttctcccac ctgctcacca catccccctt cggccgcatg gagcgctacc
     6661 tcccctccgg cccctctctc ttctgaccct cgttgcgcga agacgttgta agccgcgcgg
     6721 cccgtcgagt acaatccgcg gaactcgcgc ggctttgatc ctttcatccg ccacggcccg
     6781 gttcagtttt cgcgcgcgtg gaggcgcaca tgccgaactt gctccgacac tttctgccgg
     6841 ccttcgcggc cctcgccgtg ctcgcggccg cggagcccgc gctcgccgac gaggtcgtgc
     6901 tcagaaccga caacggcgtc ggcctgagca acgtcgtggg cgggacgaat aacgcgagct
     6961 ttacatacgg ctccggcgcc gacaccgtga cggtctccgt cgtctcaagg aacaacctac
     7021 agactccctt cacaaccctc agcatggcgt tcggctccgg gcagagcgta ctgaccgact
     7081 tcggcgtcat caacgtctca ttcaccggca acggcgcgac gctgcccgcc gaggcgaccc
     7141 tcgtcgtcaa cgtcctacag ttgagcccgc ccacatctca gttcgggaac gtccaggggc
     7201 gtttcgtcgg cgccatctcc ggcacgctct cgccgacgac gaacacgctg gtcgtcaact
     7261 tcgaccagac ctccacaacc ttcttcacca acgccaacga ccggttcatc tacagcctcc
     7321 tgagcggcca gatgtcgctc tcggtcggca gcaacgtcat aggggcgcgg gtgacctcgc
     7381 ccgtccccga gccggccacg ctgctgctgc tcggcactgg gctggccggg gccgcggccg
     7441 cgcgccgtcg gcgaaaaaac tcttagcaat ccctcaagca gcgcccgccc ggcgcgcctt
     7501 tccgtcacgg ccggggcgcg cgtcgtcccg tatcgccgcc cgcgggcatc taaggagaac
     7561 tgtgggtaga aggcgttaca ggtggctttc atatttcgcg ctcggggggg ttttgatgct
     7621 cggtgcggtt tacgggtcgc tggccctgac gaagggggtg ccggcgcgcg accacgcgtt
     7681 cttcgcgcgc gacggggcgg ggcgcccgct cgtcatcgcg cacagggggg gcgccggcct
     7741 atggcccgag aacacgctcc acgccttcga gcgggcgctc gccgcgggcg cagacattat
     7801 cgagacggac gtgcgcgcta cctcggacgg cgccctcgtg ctcatgcacg acgagcgcgt
     7861 tgacaggacg accgacggct cggggcgcgt cgccgacatg acgctcgaag agctgaggcg
     7921 actggacgcc ggccaccgct ggacgccgga cggcggccgc acgttcccct tcaggggccg
     7981 tggcctgcgc gtcccgacac tcgacgaagt tttcaaggcg ctcgggggcg ccgctcgatt
     8041 caacatagag ccgaagcagg cttccgcccc ggtcgtgcag cgcttgtgcg cgctcgtgcg
     8101 cgagcacggg gcggccgaga gagtggtagt cgcctccttc agcgactccg tcctcgaaga
     8161 gttccggcgc tcctgccccg aggtcgcgac ctccgcgagc ccttcggagg cgtgggcgtt
     8221 cctggcgatg tacgaggcgg gcctggcggg ctcctacagc ccgccgatgc acgcgctgca
     8281 agtgccggag cgcgcgggcg gcgtccgcgt gctcacgcgc ggtttcgtcg aggccgcgca
     8341 cggccgcaac ctcaaggttc acgcctggac tgtcaattca gaggaggaca tgcggcgggt
     8401 gctggcggcg ggggttgacg gcgtgatgac ggactacccc gaccgcctcc tcaagctgct
     8461 tgggcgctga gagaggcggc cggggtttag ttttccgact cctcagttcg acgcggcctt
     8521 tgccgcggcg cggcggctct taatgacgcc cgagtcaacg gtcttgccca ggcggttgat
     8581 gacctggaag tgcatctcgt cgccggcgac ttcgattagc atgaaggaca tgtcagcgtc
     8641 gtatgccttc tcggtcagcg gcgaattctc cttgacgtcg ccggggcgca gcttcccgcc
     8701 cgcgcccgag atgaagtagt ggatgccctt ctgcggcttg atgcgctcgt agaagtgctc
     8761 gtgcccggcg aagaccacgt caacgccgta cttgacgaat atcggctcca cgatctcgcg
     8821 cagccccgtc gaggagccgt gcttgccgcc cgacgagtag ggcgggtggt ggaagaacgc
     8881 caccttccag cgagagccgt ccttcgccag ctcgccctcc agccagctca cctgcttctt
     8941 gtccatgtag ttgctgttca ggcagtagaa ggccacgtcg cccttcttga agcggtggta
     9001 ctcctcgccc ttcatgttga agtggtcgta gaagcgctgg ttcgactcgt cgtggttgcc
     9061 gagcgtggcg tagaaggtga ccttgctgtc gagcagcggc ttgtatatgt cctcgaactt
     9121 cttgcggaag tccgcggcct tctcgccgcc gtacatgttg tcgcccatca tcagcacgaa
     9181 ctcgtagggg aacgcccccc tgtacgtggt catcacgtcg gcgagctgct tctgctgcgg
     9241 cgtccctgtg ccggtgtcgc ctatgacgac gaagcggacg gagtcttcct tgttcgggag
     9301 cgtgagcatg agcgccgagg ccggggcggt cgccttggcc gcgactctgg cgccgaccgc
     9361 ctcgccgctc tcggccgcgg tcggcggctt aggctcgccg gcgccgggca gcgcgtcggt
     9421 catgtagtca actatcaggc cgttctcgcg gtcaacgagc aagaggttgc ggccgacgaa
     9481 gcggtatctg agctgcttgg ggagctgcgg cagcttcatc agcagcgtcg gggacatctc
     9541 cactagctct ctactctccg ggtacgcgta gttgacgcgc agcggcacgc ccttcgtctc
     9601 ggcctcgaag acggtctggc ggacttcctg cttctcctgc gcgtcgagcg cggtcttgat
     9661 gacggcgcgt atgtgctcgg cggcggccgg cgtaaaaacg tcgccgtgcc gggcgcctgc
     9721 gcgcgccgac ctcacgcgct cctgaaagac gaccttgtgc tgctcgatct gctcgggcgt
     9781 gctctccttc ggcagcttcg gcagcttcct ctcgatctgc tcgcgcagcg tctggtactc
     9841 cttgacgcgc gcctggaagt ctgcgaccac ctgcgcgtgg ccggacgagt gcgggccgcc
     9901 gtgctgggct tgttgagtct gtttggtctg cgccgcggcc cccgccagaa ggctcaggca
     9961 gacgaacgca gacagagcgg gcgcgagaaa tgagcgtgtt ggcattgatc tgtatcccct
    10021 ccatcggcgg gattgcaagc cgggtgccgg aggcaggcgg gcctgggcga cgccgtatag
    10081 gttaagaaaa tacaaacaga tacggccgcg gccgccccgg gggcgtcggc gccggccgtc
    10141 gcgggagcga acgcttgtag gacagggcgc ggtacacgag ggtcagaaaa gcagagaggg
    10201 ttgacgacag ccgcggctgt cgtcaaccct cttcctcccc ccgctggcgg tcgcctgttg
    10261 cgcgcgccgc gcaaagtgtt tatgttgtgc ggcaatgaag gctctcgtca ttgacgacaa
    10321 cgagctggtg cgcggtaacg tcgcggaggt cttgcgcgcc gacgggtggg aggtgagcga
    10381 ggccgagtcg gccgagggcg ccttcgagaa gctcggcgac gagcgctggt cgctcgtctt
    10441 ctgcgacgtg aagctgagcg ccaagagcga cgccgagggc tacgccgtcc tgcgccgctt
    10501 cgtcgaggtg cagcccgacg ctcagatagt cttgatgacg ggccacgcct cggccgcggg
    10561 cgcgctggac gccgtctcga tgggcgccta cgactacctg atgaag
//
LOCUS       DASPKR010000747         3881 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1024226, whole genome shotgun sequence.
ACCESSION   DASPKR010000747 DASPKR010000000
VERSION     DASPKR010000747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3881)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3881
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1024226"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1797
                     /locus_tag="VD968_19515"
     CDS             <1..1797
                     /locus_tag="VD968_19515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16637.1"
                     /translation="ARDWCEGRVAERWWWQAFFGGECYGLRAPAVWGRSPEHVPAALH
                     HLATNGRLAPFARALSASDARALLEAVTRSFGLTTLDEGFHRDEEPPDAERDSAQESS
                     SEEGRGAPSKPAAGVGATRRPPWAAVAPEAEAAGIGRGQQCLLGVGLTLFRAPALARS
                     HGFANATLRWVKTSGAEAHKPEAVNETRGRGHVPTQSGPGGARAGDRPRSETASGVER
                     ARRQPERKAVVNNPVRFLEDSGPASSDGVPGARAFDEVTAAHAEPAKPDHELARASSR
                     AAREEAEGKVSKSASTQESGAAKAELSAAVEAKAGRSEEARAGEGVAVESVSITPGRA
                     DEWAEADGSVEGRVLTEARVETELGGLFYLINVGLYLGLYADFTSPLGKGSLPLPLFD
                     FVRLLGARLLCGRKPDDPVWRLLAALSGSREGEAPCVDSELPAAWRVPAEWLKPFPEA
                     REWLWSCAAGRLRVRHAEGFVLLDAPVEDERAAVEALGRELAEYDGIVSFTLGRGEAG
                     QPTGAGGLDWWLDCLTGYVRARLRRALGVASDVETALLLCEQRARVHVTASHLDIVFS
                     LAEHPVEVRLAGLDRDPGWVPSAGRFIAFHYE"
     gene            1790..3877
                     /locus_tag="VD968_19520"
     CDS             1790..3877
                     /locus_tag="VD968_19520"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE16638.1"
                     /translation="MSEQLEETATAREPFGDLRPTPESHFKLYFYAAVLHVVREVASL
                     FGSHEAAVKQFPFLQGYSAELSSRLSNNAGGAGDAEWWREELLAWEGTAEVYLPLREL
                     REAAGLGHDALTLLTFVGLCEEDPRFGLLFEAVQGGRGQQQPTLGLIAAWWESAEGGS
                     GAARRNLRRLQELGLVQFGETASPRMSWTLQATGLLWDALRGAGEEVFAPWLEYRPPE
                     ALCPREELVVGEEVARMLSTVPALMESGEVGTLVVRGPRHNGRRTLVGAIARSLGRGL
                     LEVKGFGRECSSGQSRVADERWQTAGTLATLLNAVPVVALDLGPGETAELPRLAGYKG
                     AVGVCMEQQGGVTGQGVERALTVTLEMPGPSARRELWRRSAGEGDAAEISDAFRMTTG
                     NIHSAAALAKSYAALDGRERISPADVQKASRALNRQALDTLATRVRTHGDWSQLAVGA
                     DTLSELTVLESRCRHRERIRGVVGENLGAQLNAGVRALLTGPSGTGKTLAARALAASL
                     RMDLYRLDLSTVVNKYIGETEKNLSQIFSRAEELDVILLIDEGDSLLTQRTGVQTSND
                     RYANLETNYLLQRIETYEGIVLVTTNAGDRIDSAFRRRMDVIIDFRAPEAAERWMIWQ
                     IHLPGSHAVAPELLDEVAFRCALTGGQIRNAVLHASLLALGGGGALSSEHLVEAVKRE
                     YRKSGAVCPLRNV"
BASE COUNT          592 a         1258 c         1438 g          593 t
ORIGIN      
        1 gcgcgggact ggtgcgaggg gcgcgtcgcg gagaggtggt ggtggcaggc gttcttcggc
       61 ggcgagtgct atggcttgcg cgcgccggcc gtgtggggcc gctcgccaga gcacgtcccc
      121 gcggcgcttc atcacctcgc gacaaacggc cgcctcgccc ctttcgcgcg ggccctgagc
      181 gcgagcgacg cgcgcgctct gctcgaagcc gtgacacgca gcttcgggct gacgacgctt
      241 gatgaaggct tccaccgcga tgaggagccg cccgacgcag agcgcgactc ggcgcaggag
      301 agttcgtcgg aagaggggcg gggcgcgccc tcaaaacctg ccgcgggagt cggcgcgact
      361 cgccggccgc cgtgggcggc agtcgcgccc gaggcagagg ccgcgggtat cggtcgcggg
      421 caacaatgcc tgctcggcgt tggcctcacg ctcttccgcg ccccggcgct cgcgcgctcg
      481 cacggcttcg cgaacgctac cctgcgttgg gttaaaactt caggcgcgga ggcacataag
      541 ccggaggcag tcaacgaaac gcgaggccgg ggccatgtgc cgactcagtc gggaccgggc
      601 ggggcgcgtg caggggacag gccccgtagc gaaaccgcga gcggcgtaga gcgcgcgcga
      661 cgacagccgg agcgcaaggc cgtcgtcaac aaccctgtcc gcttccttga agatagcggg
      721 ccggcgtcgt cggacggcgt tcccggcgcg cgggcttttg atgaagtgac ggcggcgcat
      781 gccgagccag ccaaacctga ccatgagttg gcgcgcgcgt cgagccgggc cgcgcgtgaa
      841 gaggccgaag ggaaggtctc aaagagtgcg agcacacaag agagcggtgc ggcgaaggcg
      901 gagttgagcg cggccgttga ggcgaaggca gggcgttcgg aagaggctcg ggcgggagag
      961 ggcgtcgcgg tcgagtcggt gtcaatcacg cccggcaggg ctgacgagtg ggcggaggct
     1021 gatggctcgg tcgaagggcg tgtgttaaca gaggcgcggg tcgagaccga gctgggcggc
     1081 ctcttctacc tgattaacgt cgggctctac ctcgggctct acgctgattt cacctcgccg
     1141 ctcgggaaag gcagtttgcc tctgccttta ttcgacttcg tgcgcctgct cggcgcgcgc
     1201 ctcctctgcg gtcgcaagcc ggatgaccct gtgtggcgac tgctcgcggc gctttcgggc
     1261 agtcgcgagg gcgaggcgcc gtgcgttgat tcggaactgc ccgcggcctg gcgggtgccg
     1321 gccgagtggc tcaagccttt ccccgaagcg cgcgagtggc tttggtcttg cgcggcgggg
     1381 cggctgcgcg tgcggcacgc tgaaggcttc gtgctgctcg acgcgccggt tgaagatgaa
     1441 agggccgccg tcgaagctct cgggcgcgag cttgccgagt acgacgggat cgtttcgttc
     1501 acgcttgggc gtggcgaggc cggacaacct acgggcgctg gtggcctaga ctggtggctc
     1561 gactgcctga ccggctacgt ccgcgcgagg ctccggcgcg cgctcggtgt cgcgagtgac
     1621 gttgagaccg cgctactcct gtgcgagcaa agggcgcgtg ttcacgtgac ggcttcgcac
     1681 ctcgacattg tcttctcgct cgccgagcac cccgtggaag tcaggctcgc ggggctcgac
     1741 cgtgacccag gctgggtgcc ttcggccggg aggttcatcg cttttcacta tgagtgagca
     1801 actcgaagag acggcaaccg cgcgcgagcc cttcggcgac ctgcgcccga cgcccgagtc
     1861 gcactttaag ctctacttct acgcggccgt gctccacgtc gtgcgcgagg tggcgtcgct
     1921 cttcggctcg cacgaggcgg ccgtcaagca gttcccgttc ctgcaaggtt attcggccga
     1981 gctctcgtcg cgcctgtcaa acaacgcggg cggggcgggc gacgcggagt ggtggcgcga
     2041 ggagcttctg gcgtgggagg gcacggccga agtctatctg ccgctgcgcg agctgcgtga
     2101 ggcggccggc ctcggccacg acgcgctgac gcttctgacc ttcgtcgggc tgtgcgaaga
     2161 agacccgcgc ttcggccttc tcttcgaggc cgtgcagggc gggcgcggcc agcagcagcc
     2221 gacgctcggg ctgattgccg cgtggtggga gtcggccgaa ggcggctcgg gcgcggcccg
     2281 taggaacctg cggcgtctgc aagagctggg cctcgtccag ttcggcgaga cggcctcgcc
     2341 gcgcatgagc tggactttgc aggcgactgg gctgctctgg gacgcactgc gcggggcggg
     2401 cgaagaggtt ttcgccccgt ggctcgaata ccgcccgccc gaagcgctct gcccccgcga
     2461 ggagctggtc gtgggcgaag aggtcgcacg gatgctctcg accgtaccgg cgttgatgga
     2521 gtcgggcgag gtcggcacgc tcgtcgtgcg ggggccgcgg cacaacggcc ggcgcacgct
     2581 cgtcggcgca atcgcccgct cgctcgggcg cggcctgtta gaagtgaaag gcttcggcag
     2641 ggagtgctcg tcggggcagt ctcgcgtggc ggacgagcgc tggcagaccg cggggacgct
     2701 tgcgacgctg ctcaacgccg tgcccgtcgt cgccctcgac ctcggccccg gcgagacggc
     2761 ggagctgccg cgcctcgcag gctacaaggg cgcagtcggc gtctgcatgg agcagcaggg
     2821 aggcgtgacg gggcagggag tcgagcgcgc gctcaccgtg acgctcgaga tgcccggccc
     2881 ctcggcgcgc agggagcttt ggaggcgctc ggccggcgaa ggcgacgccg ccgaaataag
     2941 cgacgccttt cgaatgacga cggggaacat acacagcgcc gcggcgctgg ctaagtctta
     3001 cgcggcgctc gacgggcgcg agcgcatctc gcccgcagac gtgcagaagg cgagccgcgc
     3061 gctcaaccgg caggctctcg acacgctcgc cacgcgcgtc aggacgcacg gcgattggag
     3121 ccagctcgca gtcggcgcgg acaccctgag cgagcttacc gtgctcgaga gccgttgccg
     3181 gcaccgcgag cgcatacgcg gagttgtagg cgagaacctg ggcgcgcaac ttaacgcggg
     3241 cgtccgggct ttgctcacag gcccgagcgg gacggggaag acgctcgccg cgcgggcgct
     3301 cgccgcctcg ctcaggatgg acttgtaccg cctcgacctc tccacggtcg tcaacaagta
     3361 cataggcgag accgagaaga acctctcgca gatattctcg cgggccgagg agctggacgt
     3421 gatcctcctc attgacgagg gagactcgct cctgacgcag cgcacgggcg tccagacctc
     3481 taacgaccga tacgctaacc ttgagacgaa ttatctgcta cagcgcatag aaacctacga
     3541 aggcatcgtg ctggtgacga ccaacgcagg cgaccgcatt gacagcgcct tccgacgccg
     3601 catggacgtg ataatagact tccgcgcgcc cgaggcggcc gagcgctgga tgatctggca
     3661 gattcacctg ccgggctcgc acgcggtagc gcccgagctg ctcgacgagg tcgccttccg
     3721 ttgcgcgctc acgggcgggc agatacgcaa cgccgtcctc cacgcctcgc tcctcgcgct
     3781 cggcggcggc ggggcgctca gctccgagca cctggtcgag gcagtgaagc gcgagtaccg
     3841 caagagcggc gccgtctgcc cgcttcgcaa cgtgtgagac g
//
LOCUS       DASPKR010000748         3484 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_764999, whole genome shotgun sequence.
ACCESSION   DASPKR010000748 DASPKR010000000
VERSION     DASPKR010000748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3484)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3484
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_764999"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..404)
                     /locus_tag="VD968_19525"
     CDS             complement(<1..404)
                     /locus_tag="VD968_19525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16639.1"
                     /translation="MTDSLLEWRREFPILDKAVYLISHSLGAMPRRTFERVQEYAELW
                     ATRGVRAWAEGWWEMPLAVGDEVARIIGAEAGTVAMHQNVSVCQSVILSCFDTTPDTR
                     RNKIVYSELEFPSVMYVYEAHARDGRFRVEKV"
     gene            complement(496..855)
                     /locus_tag="VD968_19530"
     CDS             complement(496..855)
                     /locus_tag="VD968_19530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16640.1"
                     /translation="MFGGEGPPGAAAPRAPFRLFKDNCLTLPWVREKQEIDSSIQGAR
                     ADLLRSWNVYREGLKSSRSTARAEDDWRQVLGAFRRHVADLNRRIAAYNLRAPSDAFR
                     HRPLDPEREINNITRER"
     gene            1024..2514
                     /locus_tag="VD968_19535"
     CDS             1024..2514
                     /locus_tag="VD968_19535"
                     /inference="COORDINATES: protein motif:HMM:NF012927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase"
                     /protein_id="HYE16641.1"
                     /translation="MWHPENPVRHSIPEARWPTAGEAARALLFSPVRVGPIELESRTW
                     VPAMVPWRATEDGFVTRENLEWYGRFAAGRPGAIVVEATGIRDVPSGPLLRIGHDRFI
                     AGLRELVETVRRESGGRTRLLIQIIDFLAVRRRPEKSKYFERFLELRERHRRALARAT
                     GDDAWLGRDERDVRAFLRDAPEEVLEKVLDERELESLRFGYRERVTDTHLPHVKNLPD
                     VLPGLFADAAGRAREAGFDGVELHFAHAYTMASFLSRRNDRADGYGGSPVARVRLPLE
                     VFAAVRGRVGRDYAVGARFLCDEVIEGGSRVSDAAFYAAEFARAGMDFLSVSKGGKFE
                     DAKQPKVGHAVYPYTGRSGYECMPTVISDERGPFGRSLPLVREIKRAVVSAGFDTPVV
                     AAGGITTFEQAEEILRAGDADIVGAARQSLADPDWFLKVRLGRGSQVRRCTFTNYCEA
                     LDQMHKQVTCKLWDRQGLGGPGVAMSSDGKRRLLPPRWEDSRDGQD"
     gene            complement(2538..>3484)
                     /locus_tag="VD968_19540"
     CDS             complement(2538..>3484)
                     /locus_tag="VD968_19540"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HYE16642.1"
                     /translation="RRIAESFEAWDNVDVVYRDTKISVRGNSFSGIARIKLLNILQER
                     CAGLGVELRFRAGVEDVDALARESDLLVAADGVNSETRRRYAEDFRPTLGAGRNKYIW
                     YGTRQLFHGLTLTFRESEAGVFAAHSYKFSKELSTFIVECDEGTWERAGLSSMPDEEA
                     RAYLERVFARDLGGQELLSNNSRWINFVLVRNERWSRRNVVLLGDALHTAHFSIGSGT
                     KLAMEDSIALFEKFAAGAGVPEALEEFERERKPVIDEYQQAAAESRLWFENVRDYTHL
                     PPYEFAYSLMTRSKRVGYDSIRKRDPAFIAAYETERAG"
BASE COUNT          556 a         1154 c         1192 g          582 t
ORIGIN      
        1 ttgaccttct cgacgcggaa gcgcccgtcg cgcgcgtgcg cctcatagac gtacatgacg
       61 gaggggaact ccagctcgga atagactatc ttgttgcggc gggtatcggg cgtggtgtcg
      121 aagcaggaga gtatgaccga ctggcagacg gagacgttct ggtgcatggc gacggtgccg
      181 gcttccgcgc cgatgatgcg cgccacctcg tcgcccacgg cgagcggcat ctcccaccac
      241 ccttcggccc acgcgcgcac accgcgcgtc gcccagagct cggcgtactc ctgcacgcgc
      301 tcgaaggtgc ggcgcggcat cgccccgagg ctgtgcgaga taagatagac ggccttgtcg
      361 agtatcggga actcgcgccg ccactcaagc agactgtcgg tcaaaaatta gactcccccc
      421 gttagcctaa gcgtttgccg gccagtatag ccgcacgcag ccgccgcagg caaaaactgg
      481 gggcggacgg gcggcctagc gttcgcgcgt gatgttgttg atttcgcgct cggggtcgag
      541 ggggcggtgg cggaaggcgt cggagggcgc gcgcaggttg taggcggcta tgcggcggtt
      601 gaggtctgcc acgtgccggc ggaaggcgcc gagcacctgc cgccagtcgt cctcggcccg
      661 cgccgtcgag cgactggact ttaagccctc tcgatagacg ttccaggagc gcaggaggtc
      721 tgctcgcgcg ccctgtatgg aagagtcaat ctcctgcttc tctcgaaccc aggggagcgt
      781 aaggcagtta tccttgaaga gccggaaggg ggcgcgcgga gccgcggccc ccggcgggcc
      841 ttcgccgccg aacaagcctt taaatttccg tccgaaaaaa tcgtcccagc cgctcatcgt
      901 gcctttaacc caccgctcct tccgacagag actctctacg ccgcgcgagc ccctccggtt
      961 tagacttttt acgcggttac tggcggccag gaaaaactgc tacactcggg gcctctaacc
     1021 cttatgtggc accccgaaaa ccccgtgcgg cactcgatac cggaggcgcg ctggccgacg
     1081 gccggcgaag ccgcgcgcgc actcctcttc agccccgtgc gcgtggggcc gattgagctt
     1141 gagagccgga cttgggtgcc ggcgatggtg ccgtggcgcg cgaccgagga cggcttcgtc
     1201 acgcgcgaga acctggaatg gtacggccgc ttcgcggcgg ggcggcccgg cgcgattgtc
     1261 gtcgaggcga cggggatacg cgacgtgcct tcggggccgc tcctgcgcat aggccacgac
     1321 cgcttcatcg cgggcctccg cgagctggtc gagaccgtcc ggcgcgagag cggcgggcgc
     1381 acgcgcctgc tcatacagat aattgacttc ctcgccgtca ggcgccgccc cgagaagtcg
     1441 aaatacttcg agcgcttcct tgaattaaga gaacgacacc ggcgggcgct cgcccgagcg
     1501 accggcgacg acgcctggct cggcagggat gagcgagacg tgcgcgcctt cctgcgcgac
     1561 gcgccggagg aagtgcttga gaaggtcttg gacgagcggg agcttgagtc tttgcgcttc
     1621 ggctaccgcg agcgcgtaac ggacacgcac ctgccccacg tcaagaacct gcccgacgtg
     1681 ttgcccggcc tgttcgcaga cgcggccggg cgtgcgcgcg aggcgggctt cgacggcgtc
     1741 gagctgcact tcgcgcacgc ctacacgatg gcctcgttcc tgagccggcg caacgaccgc
     1801 gcggacggct atggcggttc gcccgttgcg cgcgtgcgcc tccccctcga agtcttcgcc
     1861 gcggtgcgcg ggcgcgtcgg gcgcgactac gccgtcggcg cgcgcttcct ctgcgacgaa
     1921 gtgatagagg gcgggagccg cgtctcggac gccgccttct acgccgcgga gttcgcgcgc
     1981 gccggcatgg acttcctctc ggtctcgaag ggggggaagt tcgaggatgc caagcagccg
     2041 aaggtcggcc acgccgtcta tccctacacc ggacggagcg gctacgagtg catgccgacc
     2101 gtcatctccg acgagcgcgg ccccttcggc cgaagcctcc cgctcgtacg cgagataaag
     2161 cgcgccgtag tctcagcggg ctttgacacg ccggtcgtcg ccgcgggcgg catcacgacc
     2221 ttcgagcagg ccgaggagat tctgcgcgcg ggcgacgccg acattgtggg cgccgcacgc
     2281 cagagcctcg cggacccgga ctggttcttg aaagtgaggc tgggccgggg ctcgcaggtg
     2341 cgccgctgca ccttcacgaa ctactgcgag gcgctcgacc agatgcacaa gcaggtcacc
     2401 tgcaagctct gggacaggca ggggctcggc gggccgggcg tcgcgatgag cagcgacggc
     2461 aagcgccgcc tcctcccgcc gcggtgggaa gattcacggg acgggcagga ttaagagggc
     2521 ttcagccagc attctcttca tcctgcccgc tcggtctcgt aggcggcgat gaaggcgggg
     2581 tcgcgcttgc gtatgctgtc gtagccgacg cgcttgctgc gcgtcatcag gctgtaggcg
     2641 aactcgtagg gcggcaggtg cgtgtagtcg cgcacgttct cgaaccacag gcggctctcg
     2701 gcggcggcct gctggtactc gtctatgacg ggcttgcgct cgcgctcgaa ctcttccaat
     2761 gcctcgggga cgcccgcgcc cgcggcgaat ttctcgaaca gcgcgataga gtcctccatc
     2821 gcgagcttcg tccccgagcc gatggagaag tgcgccgtgt gcagagcgtc gccgagcagc
     2881 acgacgttcc ggcggctcca ccgctcgttc ctcaccagca caaagtttat ccagcgcgag
     2941 ttattcgaca gaagctcttg gccgccgagg tcgcgcgcga acacgcgctc gaggtacgcc
     3001 ctcgcttctt cgtccggcat tgacgagagc ccggcccgct cccacgtccc ctcgtcgcac
     3061 tcgacgatga aggtgctcag ctccttgctg aacttgtaag agtgcgcggc gaagacgccg
     3121 gcctcggatt cgcggaaggt gagcgtcagc ccgtggaaga gctggcgggt gccgtaccag
     3181 atgtatttgt tccggccagc accgagagtg ggccggaagt cttcggcgta gcgccggcgg
     3241 gtctcgctgt tgactccgtc ggcggcgacg agcaggtctg actcgcgtgc gagcgcgtca
     3301 acgtcttcga ccccggcgcg gaagcgcagc tcgacgccca gcccggcgca ccgctcctgc
     3361 aggatgttga ggagctttat gcgcgcgatg ccggagaagc tgttgccgcg gacgcttatc
     3421 ttcgtgtcgc gatagaccac gtcaacgttg tcccacgcct cgaagctctc ggcgatgcgg
     3481 cggt
//
LOCUS       DASPKR010000749         9404 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_127615, whole genome shotgun sequence.
ACCESSION   DASPKR010000749 DASPKR010000000
VERSION     DASPKR010000749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9404)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9404
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127615"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..232
                     /locus_tag="VD968_19545"
     CDS             <1..232
                     /locus_tag="VD968_19545"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HYE16643.1"
                     /translation="SPGVRVVITDRGPGMDGPTRARIFEPFFTTKKKGTGLGLAIAKQ
                     IVEQHGGTINVLSRLGEGTSFVVELPLSVGGL"
     gene            complement(346..1728)
                     /locus_tag="VD968_19550"
     CDS             complement(346..1728)
                     /locus_tag="VD968_19550"
                     /inference="COORDINATES: protein motif:HMM:NF025473.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABA4-like family protein"
                     /protein_id="HYE16644.1"
                     /translation="MYVTLFNVAGVAIVAWLLLIFLPKWHVTRWLARTEVFPVFLSVL
                     YVVGVVPLFAAQGPGVMRDFGSAEGVTRLLASQPVALVAWLHILAFDQLVGLYIYRDN
                     MEHRYVPLPVQSVLLFLTLMFGPAGFLAYYLLRLARRGRAAERAAAGEGRGPARGGDA
                     VAPLDLEASSARDARVGLLYVLREERLLAALGFAGLLLGAAGFAVMLARGRYVPPEGD
                     LYKMVSFDVAMGVYLLTLIFFIPLSGMSQAARGRLRWAWALMTVYAYATENLQIYRGL
                     DPRFTRAGSTADVLAGMLLGIDAIGLIVVFCLVAFRFFFCATRINGTVLLVAVRYAFA
                     ATLFAFATGLWMGLVQGSRVGAAGNLLPLHALGFHGLQAIPLVTLLLTWSRADGRRSR
                     RLTHAAGLAWLGACAFVAWQTALGRPVYEPSAATLSAAALLLAWLGCAAAAAAVWGRA
                     EPRRRAAASA"
     gene            complement(1767..2636)
                     /locus_tag="VD968_19555"
     CDS             complement(1767..2636)
                     /locus_tag="VD968_19555"
                     /inference="COORDINATES: protein motif:HMM:NF045022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HYE16645.1"
                     /translation="MTHTVKSGETLSKIAKAHKISLAQLLDANPKFKANPNRVRVGDI
                     LNIPDSQAAPVVQPPPTQPEPQPEPQPQPQPAAGRVLGKLSEKYETGGRGPGTVSGGQ
                     GDAGGASYGSYQMTSKPGGGTVKRFVSQPGFPFGDSFAGLTPGGKEFTAAWKQLASTR
                     REEFQSSQHDYIKKTHFDPLVQKIINDDGLNVLTRSHALQDVIWSTAVQHGPKNNIVH
                     RALAKVSERPEDAGFDKSLISAIYAERGRKDANGVLVHFSRNSAAVQQGVSRRFRDEL
                     KDALAMLAEETSG"
     gene            complement(2837..4138)
                     /gene="hemL"
                     /locus_tag="VD968_19560"
     CDS             complement(2837..4138)
                     /gene="hemL"
                     /locus_tag="VD968_19560"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: protein motif:HMM:NF000818.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HYE16646.1"
                     /translation="MSATHEERQQGSEELFRRAVELMPGGVNSPVRAFRGVGGTPRFI
                     ASAHGATMTDVDGRTYIDYVGSWGPMILGHADPEVIDALHAALGRGTSYGAPTELEVE
                     MAEEIIDAVPSVEMVRMVNSGTEATMSALRLARGVTGREKIVKFEGCYHGHGDSLLVK
                     AGSGVATLGLPDSPGVPAAVAGGTITAPYNDPAALEQVFDQHGRDIAAVIVEPVVGNM
                     GCVPPAEGYLERLREVTRRHGALLIFDEVMTGFRLARGGAQELYGVTPDITTLGKIIG
                     GGLPVGAYGASREIMEHVAPAGPVYQAGTLSGNPLAMTAGLATLRRLRDRSLYERLDA
                     AAGRLCDGVGEAAREAGFGTVTNRVGSMFTMFFTAGPVTDWPSASKADRDLYGRFFHL
                     MLEEGVYLAPSQFEAAFLGAAHTGELIDKTIDAARRALRSL"
     gene            complement(4259..5335)
                     /locus_tag="VD968_19565"
     CDS             complement(4259..5335)
                     /locus_tag="VD968_19565"
                     /inference="COORDINATES: protein motif:HMM:NF014954.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16647.1"
                     /translation="MPEVIANAEEVTPLWLTERLRANGHLRRGGVSGVRVKSSRTLPV
                     SVISRLEVEYEPGAGPEAPRSLFLKVSNPDFVNEPRESPPEEIVFYSSVAPEMPDPPV
                     PRFYDAGFSRETGRSHLLLEDLSETHRHAPDPLAPPRASCEAAVDCLAGVHAHWWEHA
                     RLGAGVGRLLDDAGVRGLAEATAARYETFAGSLGGRLPRAWRETFERVIATFPRPWAR
                     LTSARGLTLTHGDAHTLNFLFPRGRGVGRTYLVDWQLWHVHIGPRDLAYMMTLFWAPE
                     RRARMEEPLLRRYHRGLLAGGVEGYGWDDCLKDYRWSAVRNVFIPLLHWSRGWGEDFW
                     RPQLEKAMHAYDDLRCVELVEGAA"
     gene            complement(5373..6557)
                     /locus_tag="VD968_19570"
     CDS             complement(5373..6557)
                     /locus_tag="VD968_19570"
                     /inference="COORDINATES: protein motif:HMM:NF018805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HYE16648.1"
                     /translation="MSSNLIESFGQTAAEVLDGIADAIVGKASTLRDGTEHASVELPR
                     DLYAHAGAQTEWWYYTGHMRTASGRRFGFELVFFKRRTDLDRFGVVPLRLIANPLYLA
                     HFAVADESRSRFRYEHRKSANGLLDPPARASAKSYYLRLGDWTVREAHGIHLLRATLG
                     GDLVFEAALKPSKPAVLNGSEGRGVSFKDHGEASRYFSYTRMEAEGDITWNGVTEHFT
                     GSAWMDREFGTWATTDNQKGWDWFSLQLSDDSEVMVYHLRDAAGRPSPFSSGTFVGPD
                     GSWSHLSREDFELEATGRWRSPASGATYPSGWRLRVPRFGVDVTVTPVLKDQELDTRG
                     TTMIVYWEGACAVEGSRAGRAVEGRAYVELVGYDRSHEQPSLTAFLFGGALDRRWRNV
                     FG"
     gene            complement(6675..8159)
                     /locus_tag="VD968_19575"
     CDS             complement(6675..8159)
                     /locus_tag="VD968_19575"
                     /inference="COORDINATES: protein motif:HMM:NF017633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HYE16649.1"
                     /translation="MNGRLIEEVVGELGRALVGRLWGKVFQLSDSSLVVEFRSGDGRH
                     LFVSAEPNRPRLYLVNRRVRDLEKESITTSPFAHALRKTLSGARLEGVEKDEGERVVR
                     FRLSAPGLVESSDSFTFVAQLTGRTSNLFLLDGEGRVLDCIRPARGEGQEVGEVYAPP
                     ASKSAPEAGRERQGGTAEVSREGFASLSEALDNHYSRMERERDFDSRAQGAAARVRQE
                     IAKLLRLRENLSRDSAAHGDAEEHKKIGDLLLANLGSAERLGRVVRLKDFYTEGEPFI
                     EVEVEENRSLQEEAAERFARYGKAKRAAREISERLESVTRELAALEERRTELEGIIAA
                     RDAEALARFTGAGEGHTARKGAPRAGQKGKGRGRGGATVGRRYRSSDGYEIIVGRGSR
                     ENDELTFRVARSYDTWLHAADYPGSHVVVRSRGRDDQVPHRTVIEAAQLAAHFSQARK
                     DAKVAVNYTQRKFISKPKGAAPGLVYLSSFRTLLVEPRDELERA"
     gene            complement(8253..>9404)
                     /locus_tag="VD968_19580"
     CDS             complement(8253..>9404)
                     /locus_tag="VD968_19580"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HYE16650.1"
                     /translation="FREIQQRRAREAALEAEAAGAAAGRQEGAGADEEFDDAAVTTSK
                     APETGKQLGLVPPPPEAPEMNPIVAAALARVERARSQAASQRVTRGGSHRGGAAAAAR
                     VVEEEFEQLPRAAARAEQALQARDESLRAPAMRSTPAPKPEAGEVPPPRSSGLTVVPP
                     KPEAATAPPAAEALAAPKSETVQAGSVAPAAPAAKEDESQAPTAPAQTAEQSEAKPRP
                     RHIAGVIDDNWLERNGTEILPKVTAVQASADDRAPRWRRFVAGVIDLFVVAFIAAPFA
                     AAIELTISNWGDDRVAGSMAGIVLILMFLYHTCSVALAGRTWGMSLLSLHAVDARKAS
                     VPRTGQCVRRAIFFILSLLTFGLGLLYSFFDAEGRTAHDLLSGTVVVKE"
BASE COUNT         1468 a         3264 c         3220 g         1452 t
ORIGIN      
        1 ctctcccggc gtgcgcgtcg ttataacaga ccgcggcccg ggcatggacg ggccgacgcg
       61 cgcccgaata ttcgagccgt tctttacgac gaagaagaag gggacggggc tcggcctcgc
      121 catcgccaag cagatagtcg agcagcacgg cggcacgata aacgtcttga gcaggcttgg
      181 cgaggggacg agcttcgtcg tcgagctgcc actctccgta ggcgggcttt agtcggtgcg
      241 gccgggggcg gcgggcattc cgccgtgccg ttgtttttcg ccccgcaggc gatgcattac
      301 ttcaggtgaa aggtaagcgg ccggggaatt ttcgcgcccg tgccgtcaag ctgacgcggc
      361 cgcgcgccgg cgcggctccg cgcggcccca caccgcggcc gccgcggcgg cgcagccgag
      421 ccacgcgagc aggagcgcgg ccgccgacag ggtggcggcc gagggctcat agacggggcg
      481 gcccagcgca gtctgccacg cgacgaaggc gcacgcgccg agccacgcaa ggcccgcggc
      541 gtgcgtcaac cgccgcgagc gacgcccgtc cgcgcgcgac caagtgagca gaagtgtcac
      601 aagcgggatt gcctgtaggc cgtggaagcc gagagcgtgc agcggcagga ggttccccgc
      661 agcgccgacc cgcgagccct gcacgagccc catccaaagc cccgtcgcga aggcgaagag
      721 cgtcgccgcg aaggcgtagc ggacggcgac gagaagaacc gtcccgttaa tcctcgtcgc
      781 gcagaagaag aagcggaaag cgacgaggca gaagacgacg atgaggccga tggcgtcaat
      841 gcctagcagc atgcccgcca gcacgtccgc cgtcgagccc gcgcgcgtga agcgggggtc
      901 gagcccgcgg taaatctgta ggttctccgt cgcgtacgca tagaccgtca tcaaggccca
      961 ggcccagcgc agccgccccc tcgcggcttg cgacatcccc gacaagggga tgaagaagat
     1021 cagggtcaga aggtaaacgc ccatcgccac gtcgaacgac accatcttgt agaggtcgcc
     1081 ctcgggcggc acgtagcggc cgcgcgcgag catcacagcg aagcccgccg cgccgagcag
     1141 tagccccgcg aagcccagcg ccgccagcag ccgttcctcc ctgaggacgt agagaagccc
     1201 cacgcgcgcg tcccgcgccg aagaggcttc gaggtcgagc ggcgcgacgg cgtcgccgcc
     1261 tcgtgcaggc cctctgccct cgccggccgc cgctctctct gcggccctgc ccctgcgcgc
     1321 gagcctcagc aggtagtagg cgaggaagcc ggccgggccg aacatgagcg taaggaagag
     1381 gagcacggac tgcacgggga gcgggacgta acggtgctcc atgttgtcgc ggtagatgta
     1441 aaggccgacg agctggtcga aggcgagtat gtgcagccac gcgacgagcg cgacgggctg
     1501 cgaggccagc aggcgcgtca cgccctccgc gctcccgaag tcgcgcatga cgccggggcc
     1561 ttgcgcggcg aacagcggca cgacgcccac gacgtagagc accgagagga agacggggaa
     1621 gacctccgtg cgcgctagcc agcgcgtcac gtgccacttc ggcaggaaga tgagcagcag
     1681 ccacgcgact atcgcgaccc ctgcgacgtt aaagagggtg acgtacatga gggggcctcc
     1741 tcacagtcgc acggaggagc ttcggttcaa cccgaagtct cctccgccag catcgcgagg
     1801 gcgtccttca gctcgtccct gaacctccgt gacacgccct gctggacggc ggcggagttg
     1861 cgggagaagt ggacgaggac gccgttagcg tccttccgcc cgcgctcggc gtaaatcgcg
     1921 gagatcaggc tcttgtcgaa gcccgcgtct tcgggccgct cgctcacctt ggcgagcgcg
     1981 cggtgcacga tgttgttttt cgggccgtgc tgcaccgccg tagaccagat gacatcctga
     2041 agcgcgtgtg accgcgtgag cacgttcagc ccgtcgtcgt tgatgatctt ctggacgagc
     2101 gggtcgaagt gagttttctt aatgtagtcg tgctggctgc tctgaaactc ctcgcgccgc
     2161 gtggaggcga gctgcttcca agccgccgtg aactctttgc cgcccggcgt gaggcccgcg
     2221 aaactgtcgc cgaaggggaa gcccggttgg gagacgaacc gcttgaccgt cccgccgccg
     2281 ggcttactcg tcatctggta agagccgtag gacgcgccgc ccgcgtcccc ctgcccgccc
     2341 gaaaccgtgc cggggcctct cccgccggtc tcgtactttt cggacagctt ccccaagacc
     2401 ctgcccgccg ccggttgcgg ctgtggctgc ggctccggct gaggctccgg ctgcgtgggg
     2461 ggcggctgca cgaccggggc ggcctgactg tcggggatgt tcaggatatc gccgacgcgg
     2521 acgcggtttg ggttcgcctt gaatttcggg ttggcgtcga gcagttgcgc gagggagatt
     2581 ttgtgggctt tggcgatctt cgacagggtc tcgcctgact ttactgtgtg ggtcatgggt
     2641 tccttcctcg ggaatgagtc tcttgaccgt gggcctgttc aagcaagggc gcgcccgtgt
     2701 gcgcggcaag acgtgaagag cacgaaaagt accctcgtga gcggggcgcg agggccgggg
     2761 cgcggctaaa aataagtcag cccggcgggc gtgtcaatgt tttaatcggc ccggcgcgtc
     2821 agccgcgccg cttccctcag agcgagcgca gggctctgcg cgcggcgtcg attgttttat
     2881 ctatcaactc gcccgtgtgc gcggcgccga ggaaggcggc ctcgaactgc gagggcgcaa
     2941 gatagacgcc ctcttcgagc atcaggtgga agaaccggcc gtagaggtct cggtcggcct
     3001 tagacgccga gggccagtcg gtcaccggcc ctgcggtgaa gaacatcgtg aacatcgagc
     3061 cgacgcggtt cgtcacggtc ccgaagcccg cctcgcgcgc ggcctcgccc acgccgtcgc
     3121 aaagcctccc ggccgcggcg tcgagccgct cgtagagcga gcggtcgcgc aggcggcgta
     3181 gcgtcgccag cccggcagtc atcgcgagcg ggttccccga aagcgtgccg gcctgataga
     3241 cggggccggc cggcgcgacg tgctccatta tctcgcggct cgcgccgtag gcgccgacgg
     3301 gcagcccgcc gccgattatc ttgcccagtg tcgtgatgtc gggggtgacg ccgtaaagct
     3361 cctgcgcgcc gccgcgcgcc aggcggaagc ccgtcatcac ctcgtcgaag ataaggagcg
     3421 cgccgtgacg gcgcgtgacc tcgcgcagcc gctcgaggta gccttcggcc ggcgggacgc
     3481 agcccatgtt gccgacgacg ggctcgacta tgacggcggc gatgtctcga ccgtgttggt
     3541 cgaaaacttg ttcgagcgcg gccgggtcgt tgtacggcgc ggttatcgtc ccgccggcga
     3601 cggccgcggg gacgccgggg ctgtcgggca aacccagcgt cgcgacgccg gagcctgcct
     3661 tcaccagcag gctgtcgccg tgaccgtggt agcagccctc gaacttgact atcttctccc
     3721 ggcccgtcac gccgcgcgcg agcctgagcg ccgacatcgt agcctcagtc ccgctgttga
     3781 ccatccgaac catctcgacc gaggggacgg cgtcaattat ctcctcggcc atctcgacct
     3841 caagctcggt cggcgcgccg tagctagtac cgcgcccgag cgcggcgtgc agcgcgtcta
     3901 tcacctccgg gtcggcgtgg ccgagaatca tcggccccca cgagcccacg tagtctatgt
     3961 acgtgcggcc gtcaacgtca gtcatcgtag cgccgtgcgc gctggcgatg aagcgcggcg
     4021 tgccgcccac gcctcggaaa gcgcggacgg gcgagttcac cccgcccggc atcaactcga
     4081 cggcgcgccg gaacaattcc tccgaaccct gttgcctctc ctcgtgtgtt gcgctcatgc
     4141 cctcatgcta aacgcgcagc cgagggcaag gcaaggaggg gatttgccga gcgccggcgt
     4201 cggcgcgccg aggcacagga cggaggaggg aagggaggca attaggcggg gctgttcttc
     4261 aagccgctcc ctcgacgagt tccacgcagc gcaggtcgtc gtaagcgtgc atggcttttt
     4321 cgagctgcgg ccgccagaag tcttcgcccc agcccctcga ccagtgcagg agggggatga
     4381 agacgttcct gacggcagac cagcggtagt ccttcaggca gtcgtcccat ccgtagccct
     4441 cgacgccgcc cgccaggagg ccccggtggt aacgcctcag cagcggctct tccatgcgcg
     4501 cccgccgctc cggcgcccag aagagcgtca tcatgtacgc gaggtcgcgc gggcctatgt
     4561 gcacgtgcca caactgccag tcaaccaggt atgtgcggcc cacgccgcgc ccgcgcggga
     4621 agaggaagtt cagtgtgtgc gcgtcgccgt gcgtgagcgt gagcccgcgc gcggaggtca
     4681 ggcgcgccca ggggcgcggg aaggtcgcta tgacccgctc gaaggtctcg cgccacgccc
     4741 gcgggaggcg cccgccgagc gagccggcga acgtctcgta gcgggcggcc gtcgcctccg
     4801 ccagcccccg cacgcccgcg tcgtcgagca ggcggcccac gcccgcgccg agccgcgcgt
     4861 gctcccacca gtgcgcatgg acgcccgcga ggcaatccac cgccgcctcg cacgaggccc
     4921 gcggcggcgc cagagggtca ggcgcgtggc ggtgcgtctc ggacaggtct tcgagcagga
     4981 ggtgagagcg gcccgtctcg cgcgagaagc ccgcgtcgta gaagcgcggc acgggcgggt
     5041 cgggcatctc gggcgcgacc gacgagtaga agacgatctc ttcgggcggg ctctcgcgcg
     5101 gctcgttgac gaaatcgggg ttcgagactt tcagaaagag gctccggggc gcttccgggc
     5161 cggcccccgg ctcgtactcc acttcgagtc gggagatgac cgagaccggg agcgtgcgcg
     5221 aagacttgac ccgcacgccc gacacgccgc cgcggcggag gtgaccgttg gcgcgtagcc
     5281 tctcggtcag ccagagcggg gtgacttctt cggcgttcgc gatgacctcg ggcataagac
     5341 gccgaagcgg cccgccgcgc aacggggccg cgctaaccga agacgttgcg ccagcggcgg
     5401 tcgagcgcgc cgccgaagag gaaggctgtg agcgagggtt gctcgtgcga gcggtcgtag
     5461 ccgacaagct cgacgtaggc gcgcccctcg accgcgcgcc cggcgcggct gccctcgacc
     5521 gcgcacgcgc cctcccaata gacgatcatc gtcgtcccgc gcgtgtccag ctcctgatcc
     5581 ttcaagacag gcgtcaccgt aacgtccacc ccgaagcgcg gcacgcgcag ccgccagccg
     5641 ctcgggtacg tggcgccgct cgcggggctg cgccagcgcc ccgtggcctc cagctcgaag
     5701 tcttcgcgcg agaggtgcga ccaagagccg tccgggccga cgaaggtgcc gctcgaaaaa
     5761 ggcgacggcc tcccggcggc gtcgcgcagg tgatagacca tcacctcgga gtcgtccgag
     5821 agctgtaggc tgaaccagtc ccagcccttc tggttgtcgg tcgtcgccca ggtgccgaac
     5881 tccctgtcca tccaggccga gccggtgaag tgctccgtga cgccgttcca cgttatgtcg
     5941 ccctcggcct ccatgcgagt gtaggagaag tagcgcgagg cttcgccgtg gtctttgaag
     6001 ctgacgccgc gcccctcgct gccgttcaag accgcgggct tcgagggctt tagcgccgcc
     6061 tcgaagacga ggtcgccgcc cagagtcgcg cgcaggaggt gtatgccgtg ggcctcgcgc
     6121 acagtccagt cgccgagccg caggtagtag ctcttcgcgg aggcgcgggc cggagggtct
     6181 agcagcccgt tggcgctctt gcggtgctcg tagcggaagc gcgagcgcga ctcgtccgcg
     6241 acggcgaagt gtgcgaggta gagcgggttc gctattagcc gcagcggcac gacgccgaag
     6301 cggtcgaggt ctgtgcgccg cttgaagaag acgagctcga agccgaagcg gcggcccgac
     6361 gcggtcctca tatggcccgt gtagtaccac cactccgtct gcgcgcccgc gtgcgcgtag
     6421 aggtcgcgcg ggagctccac gctcgcgtgc tccgttccgt cgcgcagggt cgaagcctta
     6481 cccacgatag cgtcggcgat gccgtcgagc acttcggcgg ccgtttgccc gaacgactcg
     6541 atgagattac tgctcataaa actcttgccg gaaccctcca tgccagtcag cgatttcgtc
     6601 gtcaagaata ccgccggggc gtcgcgaaag tgtgcggcat ttgcaaagtc ggcgttgaat
     6661 tcgcgcccgc gccttcaggc gcgctccaac tcgtcgcgcg gctcgacgag gagcgtgcgg
     6721 aagctcgaca gatagaccag gccgggggcg gctcccttcg gcttcgagat gaacttgcgc
     6781 tgcgtgtagt tgactgcgac cttcgcgtcc ttgcgcgcct ggctgaagtg cgcggcgagc
     6841 tgcgcggcct cgatgaccgt tcggtgcggc acctggtcgt cgcggccgcg gctcctgacg
     6901 acgacgtgcg agccggggta gtcggccgcg tgcagccagg tgtcgtaaga gcgggcgacg
     6961 cggaacgtaa gttcgtcgtt ctcgcgcgag ccgcggccga cgattatttc gtagccgtca
     7021 gaggagcgat aacgccttcc gaccgtcgcg ccccctcgcc cacggccctt ccccttctgc
     7081 cccgcgcgcg gcgcgccctt ccgcgcagta tgtccttcgc ccgcccccgt gaagcgcgcg
     7141 agcgcctccg cgtcgcgcgc agcgattatc ccttcaagct ccgtgcgcct ctcttcgagc
     7201 gccgcgagct cgcgcgtgac cgattcgagc cgctcgctta tctcgcgcgc cgcgcgcttg
     7261 gccttgccgt agcgcgcgaa cctttcggca gcctcctcct gcaagctcct gttctcctcg
     7321 acctcgacct cgatgaaggg ctcgccctcg gtgtaaaagt ctttgaggcg aactacgcgg
     7381 ccgagcctct ctgccgagcc gaggttagcg agcagcaggt cgcctatctt cttgtgctct
     7441 tcggcgtcgc cgtgcgcggc cgagtcgcgc gagaggttct cccgtagccg caggagcttc
     7501 gcaatctcct gccttacgcg cgcagcggct ccttgcgcgc gcgagtcgaa gtcgcgctcg
     7561 cgctccatac gcgaatagtg attgtcgagc gcttcggaga gggaagcgaa gccctcgcgt
     7621 gagacttctg ccgtgcctcc ctgcctctcg cgccccgcct ccggcgcgct tttcgaggcg
     7681 ggcggcgcat agacttcgcc gacctcctgc ccctcgcccc gcgccggcct gatgcagtcg
     7741 agcacgcgcc cctcgccgtc cagcaggaag aggttcgacg tgcggcccgt caactgcgcg
     7801 acgaaagtga aagagtcgct gctctccacc agccccggcg ccgagaggcg gaagcgcacg
     7861 acgcgctcgc cctcgtcctt ctcgacgcct tcgagcctcg cgccagacag agtcttccgc
     7921 agcgcgtgcg cgaaaggcga agtcgtaatt gattccttct ccaagtcgcg gacgcggcgg
     7981 ttgacgaggt agaggcgcgg ccggttcggc tccgccgaga cgaacaggtg ccggccgtcg
     8041 cccgagcgga actcgacgac gagagacgag tcggagagct ggaacacttt cccccagagt
     8101 ctcccgacga gtgcgcgccc cagctcaccc accacctcct cgatcagccg cccgttcata
     8161 aactgcaatc tagcaaactt cccaccgacg acaaaaaggc ccgagccgcc tcagcgctcg
     8221 ggcctctgcc gttgaaggtt cgaccttgtc gcttactctt tgacaaccac ggtgccggag
     8281 agcaggtcgt gagccgtgcg cccttcggcg tcgaagaacg agtagagcag ccccagcccg
     8341 aaggtcagaa gcgagaggat gaagaagatt gcgcggcgca cgcactggcc cgtgcgcggg
     8401 acgctcgcct tgcgagcgtc aaccgcgtgc agcgagagca gggacatccc ccacgtccgc
     8461 cccgcgagcg ccaccgagca ggtgtggtat aggaacatca gtatcaggac gataccggcc
     8521 atcgagcccg ccacacggtc gtcgccccag ttacttatcg tcagctcgat tgcggcggcg
     8581 aacggcgccg cgatgaaagc gaccacgaac aggtcaatga ctcccgcgac gaaacggcgc
     8641 cagcgcggcg cgcggtcgtc agcggaagcc tgcacggccg tcaccttcgg cagaatctcc
     8701 gtcccgttcc tttcgagcca gttgtcgtca atgacgcccg cgatgtggcg gggccgtggc
     8761 ttcgcctcgc tctgctcggc cgtctgcgcg ggcgccgtcg gagcctggct ttcatcctcc
     8821 ttcgcggcgg gcgcggcggg cgccacgctt cctgcctgaa cggtttcaga tttcggcgcc
     8881 gccaacgctt cggcggctgg cggggctgtc gccgcctccg gcttcggcgg gacgaccgtc
     8941 aagcccgacg agcgcggcgg agggacttcg cccgcctccg gcttcggcgc gggcgtgctg
     9001 cgcatcgcgg gcgcgcgcag gctttcgtcg cgcgcttgca gcgcctgctc agcccgcgcg
     9061 gcggcgcgcg gcagttgctc gaactcctcc tcgacgacgc gcgcggccgc ggccgccccg
     9121 ccccggtgcg agccaccgcg cgtcacgcgc tgggacgcgg cctggctgcg cgctcgttcg
     9181 accctcgcga gcgccgcggc cactatcggg ttcatctctg gcgcctccgg cggcggaggg
     9241 acgaggccga gttgcttgcc cgtctccggc gccttcgacg tcgtgacggc ggcgtcgtca
     9301 aactcttcgt cggcgcccgc gccttcctga cggcccgctg cggcccccgc agcctccgcc
     9361 tcgagcgcgg cctcgcgcgc gcggcgctgc tggatttcgc ggaa
//
LOCUS       DASPKR010000750         5876 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1163253, whole genome shotgun sequence.
ACCESSION   DASPKR010000750 DASPKR010000000
VERSION     DASPKR010000750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5876)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5876
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1163253"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            169..474
                     /locus_tag="VD968_19585"
     CDS             169..474
                     /locus_tag="VD968_19585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16651.1"
                     /translation="MADREGSPGGAARSPFLRILLWLFGGAAAGALVGAALFIFGSGV
                     DGYMKALRGEGEPILFLGSGSPATDAIIVTTLFAFGGAVFGGSLGLAAGLLSAWRRS"
     gene            complement(503..1312)
                     /locus_tag="VD968_19590"
     CDS             complement(503..1312)
                     /locus_tag="VD968_19590"
                     /inference="COORDINATES: protein motif:HMM:NF019003.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050485 - oxidoreductase activity, acting
                     on X-H and Y-H to form an X-Y bond, with a disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine/sarcosine/betaine reductase
                     selenoprotein B family protein"
                     /protein_id="HYE16652.1"
                     /translation="MEILEQAEEWRDRYVRWKQTNEMRGADVGEHYPWVENRHAPFRP
                     ARRALPMLNLALITSAGAYVDGTEPFDTEVFGGDASFREIPVEVEPADLKWSARGYDP
                     AAVAEDMNAQVPLDRLKEFEGNGIIGQLNPVFWSLCGFMPNAARFTATGLGQLVERVR
                     RYEVQAALLVPASRLCHQTLSLVARAVEAAGIPTMMLAVDREVVERARPPRAAWYPGE
                     FGCVVGKPEWPEYQRRVLDEALRLIEPIDQPSVRNLIVAAATEVEMERGER"
     gene            complement(1415..1933)
                     /locus_tag="VD968_19595"
     CDS             complement(1415..1933)
                     /locus_tag="VD968_19595"
                     /inference="COORDINATES: protein motif:HMM:NF025046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HYE16653.1"
                     /translation="MRTTPDETRGPGRAASILHGARLVLAALWLGAAVYFSFAVAPSA
                     FAVLPTRELAGALVTRTLAVVNVSGVVVGLLLLATAWPGRGRVGRAALGAEAVAAGLV
                     AGLCAVGHFAIAARLRSMRAAMRETIDALAADDPARVAFNDLHGYSVMALGVAMLAGL
                     ALLLLVARRARG"
     gene            complement(1933..2382)
                     /locus_tag="VD968_19600"
     CDS             complement(1933..2382)
                     /locus_tag="VD968_19600"
                     /inference="COORDINATES: protein motif:HMM:NF015690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF309 domain-containing protein"
                     /protein_id="HYE16654.1"
                     /translation="MSDPDSLTRDGPAYTEAHAARYPAEYLAGIDLYNAGEFHAAHDA
                     WEERWRDDAGPREKLFLQALIQSAVAFHHLEIGRPGAARRMYLMAGEKFDRLGCERFM
                     SLDLGDYRAQLDRALSWLDTAADPRTLERPEVVPPRIRLLPEVTDYD"
     gene            complement(2424..3563)
                     /locus_tag="VD968_19605"
     CDS             complement(2424..3563)
                     /locus_tag="VD968_19605"
                     /inference="COORDINATES: protein motif:HMM:NF020130.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] synthase III
                     C-terminal domain-containing protein"
                     /protein_id="HYE16655.1"
                     /translation="MINLLATATSTPPHAFSTTELIASMMHKLSPELINTIGALGVDQ
                     RFSTLENFPEFLCGAPMRATSSSTELGVQAARRCIVEWGDDPRRVGLLIAGTNTPAQL
                     LPCLASEVMADMHGVLSRSISTVSMQAQGCSVLLKTVEVARWYLTANPGKLALILLSE
                     AHTPYITPVRGGEYLGYREIARLRRGGALGDREAERRRLDTTFMVQAMLFGDGAVALL
                     LGREDGIAEFGPIAHLTNDDPGDVDLLAMGGGSLRPCAEGERPVYLMRPSVPNRGAHY
                     AVETVRRVLEDPASPVSGVGDVSGCLIHTGSKKILDGVCAQLSIEPGSEKVQTSYEVL
                     KTYGNLSSASTGFMLADRKGRREGPAIVVGFGVGFTASAGVVNFG"
     gene            complement(3792..4862)
                     /locus_tag="VD968_19610"
     CDS             complement(3792..4862)
                     /locus_tag="VD968_19610"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HYE16656.1"
                     /translation="MKRKLPLIILTLLALAALYLLFWPVPIDPAAWEPPAAPALAGQY
                     GPNSRLAASERVETGHAPEGVAVGPDGRIYAGLEDGRVVRFSAAGPGPAEPFADTGGR
                     PLGIQFDSEGNLVVADAYRGLLSISPAGAVTTLSREAAGVRFGCANDLDIASDGTIYF
                     TDASHKFPVRVYKQDIVEHRPNGRLLAYDPATRQTRVVLDGIHFANGVALGPGEESLA
                     VVETGKYRVLRVWLKGPRRGEREIFVDNLPGFPDNITFNGRGTFWLALVTPRNALLDR
                     LLPRPFLRKAILRLPAFLQPAPQRHGFVVGLDSSGRVTENLQDPAGERAAMVSSALEH
                     DGFLYMGSLGGDAVARFRLGGR"
     gene            5199..>5876
                     /locus_tag="VD968_19615"
     CDS             5199..>5876
                     /locus_tag="VD968_19615"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HYE16657.1"
                     /translation="MASETISHYRVIRKLDRGGMGEVFLAEDSRLGRRLALKLLLEEF
                     TRDPNRLRRFEQEARAASALNHPNILTIYEIGEAAGRHYIATEFVEGETLRQRIKRAP
                     LAPAEALDVAAQTAEALAAAHASHIIHRDIKPENLMLRRRDGIVKVLDFGLAKLLERP
                     AGSAPAARGAAESFTGPTETGVVMGTPRYMSPEQARGRGVDARADLWSLGVVLYECVA
                     GERPFAGE"
BASE COUNT          904 a         2002 c         2091 g          879 t
ORIGIN      
        1 cgcgcgaggt gcggcgccgg agccctcgca cgcgcatcgc cgtcgtcacc ggctacggcc
       61 gcgacgcggc gcgcacgcag ggcgacgccc cggccgacac cgtcatcggc aagcccttcg
      121 acttcgcgca ggtggaggag gtcttaacgc agttgggagg ctaaaagaat ggctgacagg
      181 gaaggatcgc ccgggggcgc ggcgcgcagc cccttcctca gaattctcct gtggctcttc
      241 ggcggcgcgg ccgccggcgc gctcgtgggc gcggccctct ttatcttcgg aagcggtgtg
      301 gacggttaca tgaaggccct gcgcggcgag ggcgagccga tattgttcct cggcagcggg
      361 tcgcctgcga ccgacgcaat aatagtgacg accttattcg cctttggggg cgccgtcttc
      421 ggcgggtcgc tcgggctcgc ggcggggctg ctctcggctt ggcgcaggtc ttagcgcgca
      481 ccttaacttt accgcggccg gcttacctct cgccccgctc catctcgact tcggtcgcgg
      541 cggcgacgat taggtttcgg acgctcggct ggtctatcgg ctcgatgagg cgcagcgctt
      601 cgtccaggac gcggcgctgg tactcgggcc attcgggctt gccgacgacg cagccgaact
      661 cgccgggata ccaggccgcg cgcggagggc gggcgcgctc gaccacctcg cggtcaaccg
      721 cgagcatcat ggtcggtatg cccgccgcct cgacggcgcg cgcgacgagc gagagcgtct
      781 ggtggcagag gcgcgaggcc gggaccagca gggccgcctg cacctcgtag cggcgcacgc
      841 gctcgaccaa ctgccccaag cccgtcgccg tgaagcgcgc cgcgttgggc atgaagccgc
      901 acaggctcca aaagaccggg ttgagctgcc ctatgatgcc gttgccctcg aactctttca
      961 ggcggtcgag aggcacctgc gcgttcatgt cttcagcgac ggccgccggg tcgtagccgc
     1021 gcgcagacca cttcaagtcc gctggctcga cctcgacggg gatttcgcgg aacgaggcgt
     1081 cgccgccgaa gacttcggtg tcgaacggct cggtgccgtc aacgtatgcg cccgccgagg
     1141 ttatgagcgc gaggttgagc atcggcagcg cccgccgcgc cgggcggaac ggggcgtggc
     1201 ggttctcgac ccaggggtag tgctcgccca cgtcggcgcc gcgcatctcg ttcgtctgct
     1261 tccagcgcac gtagcggtcg cgccactctt cagcctgttc gagtatctcc acccgagaag
     1321 cctccttcac gccctgtctg ttttatggct tggggggctg attctaaatc acaaacgtcg
     1381 gcaaggccaa cgcgaaggcc gccgccgcgc gccttcagcc gcgcgcgcgg cgcgcgacga
     1441 gcagcagcag ggcgaggccg gcgagcatcg ccacgcccag agccatgacc gagtagccgt
     1501 gcaggtcgtt gaaggcgacg cgcgccgggt cgtccgctgc gagcgcgtca atcgtctcgc
     1561 gcatcgccgc gcgcatagag cgcagacggg ccgcgatggc gaagtggccc acggcgcaga
     1621 gccccgcgac tagcccggcg gccacagcct ccgccccgag cgcagcgcgg cccactcgcc
     1681 cacggccggg ccatgctgtc gcaaggagca acaggccgac tacgacgcca ctgacgttga
     1741 cgacggcgag cgtgcgcgtg acgagcgcgc cggcaagctc gcgcgtaggc agcacggcga
     1801 aggccgacgg cgcgaccgcg aagctgaaat agacggccgc gcccagccac agcgccgcga
     1861 gcacgagccg ggcgccgtgc agaattgacg cggcgcggcc cggccctctc gtttcgtccg
     1921 gcgtggttct catcaatcgt aatccgttac ttccggcagg agccttatgc gcggcggcac
     1981 cacttcgggg cgctccagag tgcgcgggtc tgccgccgtg tcgagccacg agagcgcgcg
     2041 gtcgagctgc gcgcggtagt cgccgaggtc gagtgacatg aagcgctcgc agcctaagcg
     2101 gtcgaacttc tcgccggcca taaggtacat gcgccgggcc gcgcccggcc gccctatttc
     2161 caagtggtgg aaggccacgg ccgactgtat caatgcctga aggaagagct tctcgcgcgg
     2221 gcccgcgtcg tcgcgccagc gctcttccca ggcgtcgtgc gccgcgtgga actcgcccgc
     2281 gttgtagagg tcaatgccgg caaggtactc ggccgggtag cgggccgcgt gcgcctccgt
     2341 gtaggccggg ccgtcgcgcg tcaatgaatc agggtcgctc aaggtcggag ctaatttatc
     2401 accgggcgcc gcgccctgac caatcagccg aagttcacga cgcccgcgct cgccgtgaac
     2461 cccacgccga agccgacgac gatggccggg ccttcgcggc ggcccttgcg gtcggcgagc
     2521 atgaagccgg ttgaggcgct cgaaaggttg ccgtaggtct tcaagacttc gtacgaggtc
     2581 tgcaccttct ccgaccccgg ctctatcgag agctgcgcgc acacgccgtc gagtatcttc
     2641 ttgctgcccg tgtgtatgag gcagccgctc acgtcgccca cgcccgagac gggcgaagcg
     2701 gggtcttcga gcacgcggcg cacggtctcg acggcgtagt gcgcgccgcg gttcggcacg
     2761 ctcggccgca tcagatagac gggcctctcg ccctcggcgc aggggcgcag gctcccgccg
     2821 cccatcgcga gcaggtcaac gtcgccgggg tcgtcgttcg taaggtgagc gatggggccg
     2881 aactcagcta tgccgtcctc cctgcccaaa agcagggcca cggctccgtc gccgaacagc
     2941 atcgcctgca ccatgaaggt cgtgtcgaga cgacggcgtt ctgcctcccg gtcgccgagc
     3001 gcgccgccgc ggcgcagccg cgctatctcg cggtagccga ggtactcgcc gccgcgcacg
     3061 ggcgtgatgt acggcgtgtg cgcttcggac agaagtatga gcgcgagctt cccggggttc
     3121 gccgtcaagt accagcgcgc cacctcgacc gtcttgagca gcacggagca cccctgcgcc
     3181 tgcatgctga cggtgcttat cgagcgcgag agcacgccgt gcatgtcggc catcacctcg
     3241 gaggcgaggc agggaaggag ttgcgccggc gtgttcgtcc cggcgatgag caggccgacg
     3301 cggcgcgggt cgtcgcccca ctccactatg cagcggcggg cggcctgcac gcccagctcg
     3361 gtcgaggagc ttgtggcgcg catgggtgcg ccgcagagga actcggggaa gttctccagc
     3421 gtcgagaacc tctggtcaac gccgagcgcg ccgatggtgt tgataagctc gggggagagc
     3481 ttgtgcatca tcgaggcgat aagctccgtc gtcgagaagg cgtgcggtgg ggttgaggtc
     3541 gccgtggcta gaaggttaat catcgggggt tctgctcctg tcaaaaaggg gcgcgcgctc
     3601 ccgtcggccg cgcgtgagtc ggcgcgcggc tcgcgcggcg agcgcggcac ggcgccggaa
     3661 aagttgattg cggcctgttc gtcgtcgtga agattggccg ggtgagtccg gcacacacta
     3721 gcgtcttacg tcgtcagtac aggtgttcgg ggcaaacggt agaaattccc cgcggcctcg
     3781 acctccgggc ttcagcgccc gccgagccga aagcgcgcga ccgcgtcgcc gccgaggctc
     3841 cccatgtaga ggaagccgtc gtgctcgagg gcgctcgaga ccatcgcggc gcgctcgccc
     3901 gcggggtctt gcaggttctc cgtgactcgg cccgaagagt cgaggccgac gacgaagccg
     3961 tggcgttgcg gcgccggctg aaggaacgcc gggagtcgga ggattgcttt ccgcaggaac
     4021 ggtctcggca ggagtctgtc caggagcgcg ttgcggggcg tgacgagcgc gagccagaac
     4081 gtacccctcc cgttgaaggt gatgttatcg gggaagcccg gcagattgtc aacgaaaatc
     4141 tctctctcgc cccgccgcgg ccccttaagc cacacgcgca agaccctgta cttcccggtc
     4201 tccacgaccg cgagggactc ctcgccgggg ccgagcgcga cgccgttggc gaagtgaatg
     4261 ccgtcgagga cgacgcgcgt ctgccgcgtc gctgggtcgt aggcgagcag gcgcccgttc
     4321 ggccggtgct cgacgatgtc ctgcttatag acgcgcacgg ggaacttgtg cgaagcgtcc
     4381 gtgaagtaga tggtgccgtc agaggcgatg tcgaggtcgt tggcgcagcc gaagcgaacc
     4441 cctgcggcct cgcggctgag agtagtgacg gcgccggccg gcgagatcga aagcagcccc
     4501 cggtaagcgt ccgcgacgac gaggttgcct tcgctgtcga actgaatgcc gagcgggcgc
     4561 cctcctgtgt cggcgaacgg ctcggcgggg ccggggcccg cggcgctaaa gcggactacg
     4621 cggccgtctt cgagccccgc gtagatgcgc ccgtcagggc cgacggcgac gccctcggga
     4681 gcgtggcccg tctcgacgcg ctcggaggcg gccagccgcg agttaggccc gtactggccg
     4741 gccagagcgg gcgctgcggg cggctcccag gccgccgggt caatcggcac gggccagaac
     4801 agaaggtaaa gggcggctag cgcgagtagc gtcaggatga tgagcgggag cttgcgtttc
     4861 atggttcggg cggaaggcga gcggggacgg tcaagcagga ggcggcgcga gccgtgccgg
     4921 gccgctctcg gcctgcaaaa ttagcagcgc cgggcaggta acgcaaaccg cggccgtgca
     4981 actcgtcgta ttaggtggtg gcgggccgca atctttgccc gccgcgcgcg cggccggtgc
     5041 tataatgccg cgccgttgcc gggaacgcgc cgcgaggggc cgactcaaag agcgcgcccg
     5101 gcgtaatcag ttgtcagctt cgtgggccgc cgcttgcccc gaactcattt cccggcggcc
     5161 ccaaggcccc ggcgggcgcc cttcgaggtg ggctacgctt ggcctccgag acgatctcac
     5221 actaccgcgt catacgaaag ctcgaccgcg gcggcatggg cgaggtcttt ctggccgagg
     5281 actcgcggct cgggcgccgc ctcgcgctca agctcctcct cgaagagttc acgcgcgacc
     5341 cgaaccgcct gcgccgcttc gagcaggagg cgcgcgccgc ttccgcctta aaccacccga
     5401 acatactcac catctacgag atcggcgagg ccgccgggcg ccactacatc gccaccgagt
     5461 tcgtcgaggg cgagacgctg cggcagcgca tcaagcgcgc gccgctcgcg ccggccgagg
     5521 cgctcgacgt agccgcgcag accgccgagg ctctggccgc cgcgcacgcg agccacataa
     5581 tccaccgcga catcaagccc gagaacctga tgctgcgccg ccgcgacggg atcgtgaagg
     5641 tgctcgactt cggcctggcg aagctccttg agcggcccgc cggctcggcc cccgccgccc
     5701 gcggggcggc cgagagcttc acggggccga ccgagacggg cgtcgtgatg ggcacgccgc
     5761 gctacatgtc gcccgagcag gcgcgcggcc gaggcgtgga cgcgcgcgca gacctctgga
     5821 gcctcggcgt cgtcctctac gagtgcgtcg cgggcgagcg cccgttcgcg ggcgag
//
LOCUS       DASPKR010000751         4133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1797895, whole genome shotgun sequence.
ACCESSION   DASPKR010000751 DASPKR010000000
VERSION     DASPKR010000751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4133)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4133
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1797895"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..2943)
                     /locus_tag="VD968_19620"
     CDS             complement(46..2943)
                     /locus_tag="VD968_19620"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HYE16658.1"
                     /translation="MNIESLVAETAERFDARKQKRDRNVSLIKGKRYLEADTPERVEK
                     FLRRHGYSPKEAAELLRNRSRGAAAARETAAGRGQPDALERVLGANDLMGVAFLERGL
                     QVARTVGRVWVGVSSGRPSGFGTGFLISPRLLMTNHHVLEDASVARASLVEFDYQLGL
                     DNVFLKTSTFPLDPDEFFVNDRGLDFAVVAVKRTGTGGRELASFGWNPLIEEEGKAII
                     SQWLNIIQHPNGEAKQLALRENQMIDLLDNFIHYKTDTAPGSSGSPVLNDRWEVVGLH
                     HSGVWDTRDGQILAIDGRPWHRSMGEHRIKWKANEGVRISKIVAHLRKQPMSQAQKQM
                     FEQIFAQPPAVAPREDVGASAPAPTPGARVTAAADGSATWTIPLSVTINLGGMGAPQQ
                     PAAPPYALPPAPDGRQPRPGGAPGPGDPLSHAAGAAGAPTPGAPASDLDSVVEAAKRE
                     FGDRADVLGVRLGYVFRDGWITDERAVVITVRRKQTHATLRESGIPPLPKSFMGLPVQ
                     VANPSIEDLIREREPAKASEAFSDAPVMREEITYNGPSGFPLEEVTANMRVIAHVSPD
                     AAWPQLSRFLAATRRRLVIGVYDFGAPHVADAVEQAGRKANFRKLTLVMQKGESVGAG
                     TKADDLRDTEVVEKFENALGSKFENAWVKIGRENGWVASSYHIKVAVRDSTAFWLSSG
                     NMQSSNLPDADPISESPQQRSWLTTYNREWHAIVEHAGLAGTFEEYLKHDFRNNLGDG
                     RETLALPDVLVPEAFFLPGPAEAARPFKYFPPFNEKRDFTVTPLLTPDNYHDLTLRLV
                     KGAKRELLIQNQTFNAPEEWQDELKELVDAVIARQRAGVDVRIIFRLLDYEKVRKNLE
                     ALKDYGLDLSSVKVQKNCHTKGIVVDRERVLLGSQNWSNDGVSVNRDASLLFKDPPLA
                     SYFAEIFDHDWENLANKKLGSEWLPVELAPAAGGASEGMLRLTWKDYMEMM"
     gene            3115..3948
                     /locus_tag="VD968_19625"
     CDS             3115..3948
                     /locus_tag="VD968_19625"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16659.1"
                     /translation="MRGMVSAQTARRAVWRPLLELPRRLDLIWPMARRMLVARYRGSA
                     LGLVWAVLTPLVTIAVFTFLFAEIFGARFTGGGSSWDYALYLFCGLLPWTAFAESVQQ
                     SAGTVVAHANLVKRVVFPLETLPVSQALAALAGQLFGTAALLVAAVAVRGELHAGVLW
                     LPVLMVPQLVLTLGASWFVASLGVFVRDTAQALGLLLMAWMYLTPIIYPESAVPERFR
                     TLLEANPFTPLVRSYRLCLLEGSQPDWRGLAFFSAVALAAFVLGYWWFARTRKNFADV
                     I"
BASE COUNT          584 a         1359 c         1433 g          757 t
ORIGIN      
        1 tgagcccgcg cgcctgccga gtagagccca aatcccgcgg ccgcctcaca tcatctccat
       61 gtaatccttc cacgtcaggc ggagcatgcc ttccgacgcc ccgcccgcgg ccggcgccaa
      121 ctccaccggc agccactcgg agccgagctt cttgttcgcg aggttctccc agtcgtggtc
      181 gaagatctcg gcgaagtagc tcgccagcgg ggggtctttg aacaggaggc tcgcgtccct
      241 gttgacggag acgccgtcgt tcgaccagtt ctggctgccg agcaggactc gctcacggtc
      301 aacgacgatg ccctttgtgt ggcagttctt ctgaaccttg acgctggaga ggtcgagccc
      361 gtagtcctta agcgcctcga ggttcttccg caccttctcg taatcgagca ggcggaagat
      421 gatgcgcacg tccacgccgg cccgctgcct cgctataacg gcgtccacca gctccttcag
      481 ctcgtcctgc cactcttcgg gcgcgttgaa ggtctggttc tggataagca gctccctctt
      541 ggcgcccttg accagccgga gcgtgaggtc gtggtagttg tcgggcgtga gcagcggggt
      601 gacggtgaag tcgcgcttct cgttgaacgg ggggaagtat ttgaagggcc gtgcggcctc
      661 ggccgggccg gggaggaaga acgcctccgg cacaagaacg tccggcaggg cgagcgtctc
      721 gcgcccgtcg ccgaggttgt tgcggaagtc gtgcttgagg tactcctcga acgtcccggc
      781 gaggccggcg tgctcgacga tggcgtgcca ctcgcggttg taagtggtga gccaagacct
      841 ctgctgcggg ctctcggaga tcgggtctgc gtcgggcagg ttagaagact gcatgttgcc
      901 gctagacagc cagaaggccg tcgagtcgcg cacggccacc ttgatgtggt acgacgacgc
      961 gacccagccg ttctccctgc cgattttcac ccacgcgttc tcgaacttcg agccgagggc
     1021 gttctcgaac ttctccacca cctccgtgtc gcgcaggtcg tcggccttcg tcccggcgcc
     1081 gacgctctcg cccttctgca tgaccagcgt cagcttgcgg aagttcgcct tcctgccggc
     1141 ctgctcgacg gcgtcggcga cgtgcggggc cccgaagtca tagacgccga tgaccagccg
     1201 cctccgcgtc gccgcgagga acctcgaaag ctgaggccag gcggcgtcgg ggctgacgtg
     1261 ggcgatgacg cgcatgttcg cggtgacttc ctccagcggg aagcccgacg gcccgttgta
     1321 cgtaatctcc tcgcgcatga cgggcgcgtc ggagaacgcc tcgctcgcct tggcgggctc
     1381 gcgctcgcgt atcaagtctt cgatggaggg gttcgcgacc tgcaccggca ggcccatgaa
     1441 cgatttcggg agcgggggga tgcccgactc ccgcagcgtg gcgtgcgtct gcttgcggcg
     1501 gacggtgatg accaccgcgc gctcgtccgt gatccaaccg tccctgaaca catagccgag
     1561 cctgacgccg agcacgtcgg ccctgtcgcc gaactccctc ttggccgcct cgaccaccga
     1621 gtcgaggtct gaggccggcg cgccgggagt gggggcgccg gccgcgccgg ccgcgtgcga
     1681 caaggggtct ccggggccgg gggcgccgcc ggggcgcggc tgccggccgt cgggggcagg
     1741 ggggagagcg tagggcgggg cggccggctg ctgaggggcg cccatgccgc cgaggttgat
     1801 cgtgaccgag agggggatag tccacgtcgc gctgccgtcg gccgcggcgg tcacgcgagc
     1861 gccgggcgtc ggtgcgggcg cgctcgcgcc cacgtcctcg cgcggcgcga cggccggggg
     1921 ctgggcgaaa atctgctcga acatctgctt ctgggcctga ctcatcggct gcttgcgcag
     1981 gtgggcgacg atcttgctga tgcgaacccc ctcgttggcc ttccacttga ttcggtgctc
     2041 gcccatagac ctgtgccacg gccggccgtc gatggcgaga atttggccgt ccctggtgtc
     2101 ccacacgccc gagtggtgca ggccgacgac ctcccatcgg tcgttcagga cgggcgaccc
     2161 ggaggagccg ggggccgtgt cggtcttgta gtggatgaag ttgtccagca agtcaatcat
     2221 ctggttctcg cgcagggcta actgcttagc ctcgccgttc gggtgctgga tgatgttcag
     2281 ccactgcgag atgatggcct tgccctcctc ctcgatgagc gggttccagc cgaagctcgc
     2341 caactcgcgc ccgcccgtcc ccgtccgctt cacggccacg acggcgaaat cgagcccgcg
     2401 gtcgttgacg aagaattcgt ctgggtcgag cggaaaggtc gacgtcttca ggaagacgtt
     2461 gtcgaggccg agctggtagt cgaactcgac gagcgaagcg cgggcgacgc tcgcgtcttc
     2521 gagcacgtga tggttggtca tcaggaggcg gggcgagatg aggaagccgg tgccgaagcc
     2581 ggacggcctg ccgctcgaaa cccctaccca cacgcggccg accgtgcgcg ccacctgaag
     2641 gccgcgctcg aggaacgcga cgcccatcag gtcgttggcg ccgaggacgc gctcgagcgc
     2701 gtcgggctgg ccgcgccccg ccgcagtctc gcgcgccgcg gcggcccccc gcgagcggtt
     2761 acgcaacaac tccgccgctt ccttcgggct gtacccgtgc cgcctgagaa atttctcgac
     2821 gcgctccggc gtgtcggctt cgaggtaacg ctttcccttg atcagcgaca cgttccggtc
     2881 gcgcttttgc ttacgcgcgt cgaagcgctc cgccgtctct gccactaaag attcgatgtt
     2941 cataaggctg gcttgacctc tctccgggaa attctgttga ggttacgtcg cggcgccggc
     3001 gtaggctgcg tgcgcgcgaa agcacttcag gaaggcccct caaaaacata tgagcgaagc
     3061 gcgcgttaca tttcgcggcg ccgcgatgaa gccgccgggg ggattcttgc tacaatgcgc
     3121 ggcatggttt cggcgcagac tgcgaggcgc gcggtgtggc ggccgctcct tgaactcccg
     3181 cggcggctcg acctcatctg gccgatggcg cgacggatgc tcgtggcgcg ctaccgaggg
     3241 tcggcgcttg ggctggtgtg ggccgtgctg acgccgctcg tcacaatcgc cgtcttcacg
     3301 ttcctcttcg cggaaatctt cggggcgaga ttcacgggcg gaggcagcag ttgggactac
     3361 gcgctctatc ttttctgcgg gctgctgccg tggacggcct tcgcggagtc ggtgcagcag
     3421 tcggcaggca ccgtggtcgc gcacgcgaac ctcgtcaagc gcgtcgtctt cccactggag
     3481 acgctccccg tctcgcaggc gctcgcggcg ctcgcgggcc aactgttcgg gactgcggcg
     3541 ctactggtcg cggccgtggc ggtgcgcggc gagctgcacg cgggtgtctt gtggctcccg
     3601 gtgctgatgg tgcctcagct cgtcctcacg ctcggcgcct cgtggttcgt ggcctcgctc
     3661 ggcgtcttcg tgcgcgacac ggcgcaggcg ctcggccttc tgctgatggc ctggatgtat
     3721 ttgacgccca tcatctaccc ggagtcggcg gtgccggagc gcttccgcac gctgttggag
     3781 gcgaacccct tcacgccgct agtgcgcagc taccgactgt gcctgctcga aggctcgcag
     3841 cccgactggc gcggcctggc cttcttctcg gcggtcgcgc tcgcggcctt cgtcctcggg
     3901 tactggtggt tcgcgcgcac gcgcaaaaac ttcgcggacg ttatctaaaa agacggagcg
     3961 ggtaatgaag tctgtcgggc ggtacgtggg gaggctcggg cgcgagcttc ggaaggcggg
     4021 cctgcgcttc aggcgaagcg gcttctcgaa cttcggcgag gaggagctga tagcgcgctt
     4081 cgtcgctgag ctcctgcgcg gcggcggcga ccgcacggcc gttgacatag gcg
//
LOCUS       DASPKR010000752         3228 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1163502, whole genome shotgun sequence.
ACCESSION   DASPKR010000752 DASPKR010000000
VERSION     DASPKR010000752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3228)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3228
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1163502"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..1603)
                     /locus_tag="VD968_19630"
     CDS             complement(143..1603)
                     /locus_tag="VD968_19630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16660.1"
                     /translation="MVASPPSRPAGPRLLAPAVLLAAALFVFATQARAQCPSIDNVGW
                     GRGATVRYYLDASLSAEQRRQIRWALAEWDRANSLNNSRVRFVEAAPGGGFDFLFLNG
                     NLGGNAPAYAYKNFTTDGTVVSATLTYDPNAVFPGTSTLVADPTKPGYDTYYIKVTLH
                     EVGHTMGLDHPATPAGGLCAQPDGATVMNYICNVNDSANNMPLKVTEACDQPTINSET
                     KYTPFNQSPNPIDNSQFFVRQHYLDFLNRDADPGGLQFWTGGIESCGGDAACREVKRV
                     DTSAAFFLSIEFQETGYFVYRVYQAAFGDIPGKPVPITIQEFLPETREVGRGVVVGVG
                     DWRAQLEANKNAFVLDLVSRTRFAARYPATMSPAQFVDALNANAGGVLSQAERDQLVA
                     ELSAAGNTPQARANVLRRVAEDPDLVQREFSPAFVLMQYFGYLRRNPDDPPDTGFGGY
                     NFWLGKLNEFGGDWRRAEMVRAFISSIEYRRRFGQP"
     gene            1798..2337
                     /locus_tag="VD968_19635"
     CDS             1798..2337
                     /locus_tag="VD968_19635"
                     /inference="COORDINATES: protein motif:HMM:NF016184.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein tyrosine phosphatase family protein"
                     /protein_id="HYE16661.1"
                     /translation="MKRLVLFPLIVLAGLGAAAAAARQEKAPAEAPPIRNFVRVSEEF
                     CTGGQPKLEHLAALKEQGVKAVINLRRPSEHRADEEEAEAKRLGLRYFNIPFSFGEPK
                     DEQATEFLKLTDDPANRPAFIHCAAAVRAGAFWMIRRVLRDGWSVEDAEREAEKIGLR
                     EAPHLNEFARAYIEKHRKK"
     gene            2594..>3228
                     /locus_tag="VD968_19640"
     CDS             2594..>3228
                     /locus_tag="VD968_19640"
                     /inference="COORDINATES: protein motif:HMM:NF012879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HYE16662.1"
                     /translation="MKRVTLGLLALVLCAHAAAAQKVPVQEVTLENGMRLLMVPRKGD
                     PNVAAGWVARVGSVNERPGITGLSHLFEHMMFKGTHTVGTKNIEENLKLIKEMDQVRA
                     EIRREEQGLIRKATLGEIPDPKDPKFRSERHKQLLAKFEELTKREKELMVKDEFDRIY
                     TTAGASGMNAGTSNDFTVYFINVPANKLELWFWMESDRLKSPVFREFYSER"
BASE COUNT          578 a         1044 c         1060 g          546 t
ORIGIN      
        1 cggttcagtt tctaataaat agccacagag gcacgtagag aaggaggcag aaggcagccg
       61 gagaaatctt cctggctgcc ttctgcctcc ttctctacgt ctccctgcct ctgtagctga
      121 ctccggttcc ctagcgctca agttaaggct ggccgaaacg gcgcctgtac tcgattgacg
      181 agatgaaggc ccgaaccatt tcagcccgcc gccagtcgcc gccgaactcg ttgagtttgc
      241 ccagccagaa gttgtagccg ccgaagccgg tgtccggcgg gtcgtcgggg ttccttctca
      301 gatacccgaa gtactgcatc aggacgaaag ccgggctgaa ctctcgctgc acgaggtccg
      361 ggtcttcggc cacgcgtcgc aacacgtttg cgcgcgcctg cggcgtgttg ccggccgccg
      421 aaagctcggc gactagctgg tcgcgctcgg cctgcgagag tacgccgccc gcgttggcgt
      481 tcagagcgtc cacgaactgc gcggggctca tcgtcgccgg gtagcgcgcg gcgaagcgcg
      541 tgcgagagac gaggtcgagg acgaaggcgt tcttgttggc ttcgagttgc gcgcgccagt
      601 cgcccacgcc gacgacgacg ccgcggccga cctcgcgcgt ctccggcagg aactcctgaa
      661 tcgttatcgg cacgggcttg ccggggatgt cgccgaaggc cgcctgatag acgcgataga
      721 cgaagtagcc cgtctcctga aactctatcg agaggaagaa ggcggccgaa gtgtcaacgc
      781 gcttcacctc gcggcacgcg gcgtcgccgc cgcacgactc gatgccgccc gtccagaatt
      841 gcaggccgcc ggggtctgcg tcgcggttga ggaagtccaa gtagtgctgg cggacgaaga
      901 actgcgagtt gtcaatcggg ttcggggact gattgaaggg cgtgtacttc gtctcggagt
      961 ttatcgtcgg ctggtcgcac gcctccgtca ccttcagcgg catgttattg gcgctgtcgt
     1021 tgacgttgca gatgtagttc atgacggtcg cgccgtcggg ctgcgcgcag aggccgcccg
     1081 cgggcgtcgc cgggtgatcg agccccatcg tgtgcccgac ctcgtgcagc gtgaccttta
     1141 tgtagtaggt gtcgtagccg ggcttggtcg ggtccgccac gagcgtcgag gtacccggga
     1201 agaccgcgtt cgggtcgtag gtgagcgtcg ccgaaaccac ggtgccgtcg gtcgtgaagt
     1261 tcttgtaggc gtaggcgggc gcgttgccgc ccagattgcc gttgaggaac aggaaatcga
     1321 agccgccgcc cggcgcggcc tccacgaagc gcacgcgcga gttgttgagg ctgttggccc
     1381 tgtcccactc ggcgagggcc cagcgtatct gccggcgctg ctcggcgctc aggctcgcgt
     1441 ccaagtagta gcgaactgtc gcgccgcggc cccagccgac gttgtcaatt gaagggcatt
     1501 gggcgcgcgc ttgggtggcg aaaacaaaaa gtgcggctgc gagcaggacg gccggcgcta
     1561 gcaggcgcgg gccggccggg cgtgaaggcg gcgaggcgac catgttcgta aatccccctt
     1621 agtcgttcgg ccgtcgcgtg cccggtttcg ttccgcggcg ggcgcgctcg gcggcgaggc
     1681 ttgtaattta tccgttcggc tttcgggaga gcgcccctct gcccgcaact atggtgccgc
     1741 gccctttgac acgccgcgcg gcgcccgtat aacttcgacg ggccggagag gagaattatg
     1801 aagagactcg tcttattccc cttaatcgtg ctggcggggc tcggggccgc ggcggccgcc
     1861 gcgcggcagg agaaggcgcc ggccgaggcg ccgccgattc gcaacttcgt ccgcgtgagc
     1921 gaggagttct gcacgggcgg ccagcccaag ctagagcacc tcgccgcgct caaggagcag
     1981 ggcgtcaagg ccgtcatcaa cctgcgccgg cccagcgagc acagggccga cgaggaggag
     2041 gccgaggcca agcggctggg cctcagatac ttcaacatcc ccttctcgtt cggcgagccg
     2101 aaggacgagc aggccaccga atttctcaag ctcacggacg accccgcgaa ccgccccgct
     2161 ttcatacact gcgcggccgc cgtccgcgcc ggcgccttct ggatgataag gcgcgtgctg
     2221 cgcgacggct ggtcggtcga ggacgccgag cgcgaggccg aaaaaatcgg cctccgcgag
     2281 gcccctcacc taaacgagtt cgcccgcgcc tacatcgaga agcacaggaa gaagtgagcc
     2341 cgcgcggcca tcagcgcgcg cctgatttcg cccgcccaag ccgccccctc cgcgtttgcc
     2401 ccggcgcccg acgcgggtta aagtcttacc gtccgcgccc gtcaacgtgt gccagccgca
     2461 acccccccgt gggacaagcg gctggtgact cttcgcggcg cgcgaccgtt aagatggttc
     2521 ggccgagtcg gggtctcccc cttccgtcaa aatcttaaaa tcagtccgac ataacttaag
     2581 caaggaagac cacatgaaaa gagttacttt gggccttctc gcgctcgtct tgtgcgcgca
     2641 cgccgccgcg gcgcagaagg ttcccgtgca ggaagtcaca cttgagaacg gcatgcgcct
     2701 gctgatggtg ccgcgcaagg gcgacccgaa cgtcgccgcc ggctgggtgg cgcgcgtcgg
     2761 ctccgtcaac gagcgccccg gcatcacggg cctctcccac ctcttcgagc acatgatgtt
     2821 caagggaacg cacaccgtcg gcaccaagaa catcgaagaa aatctgaagc tcataaaaga
     2881 gatggatcag gtgcgcgccg agattcgccg cgaggagcag ggcctgatcc ggaaagccac
     2941 gctcggcgaa atccccgacc cgaaagaccc taagttccgc tccgagcgcc acaagcagct
     3001 cctcgccaag ttcgaggagc tgaccaagcg cgagaaggag ctgatggtca aggacgagtt
     3061 cgaccgcatc tacacgacgg ccggcgcctc ggggatgaac gccggcacct cgaacgactt
     3121 caccgtctat ttcatcaacg tcccggccaa caagctggag ctttggttct ggatggagtc
     3181 agaccggctg aagagccccg tcttccgcga gttctactcc gagcgcga
//
LOCUS       DASPKR010000753         2519 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_514417, whole genome shotgun sequence.
ACCESSION   DASPKR010000753 DASPKR010000000
VERSION     DASPKR010000753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2519)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514417"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..494)
                     /locus_tag="VD968_19645"
     CDS             complement(<1..494)
                     /locus_tag="VD968_19645"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYE16663.1"
                     /translation="MVESPGTKMLKASTTLVLSAALLLAAAAPLGGCGRKQRPAEGAT
                     GEQQPDKTFRLGAFMSLTGDTAQYGLSAMNGIRLAVEEANARGGVAGRRVELIVQDTR
                     SDAAETERVVRRLAAESRAHALIGEIVSSRSLAAAPVAQAERVVMLTPSSTSPEVTAV
                     GDFI"
     gene            699..1895
                     /locus_tag="VD968_19650"
     CDS             699..1895
                     /locus_tag="VD968_19650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16664.1"
                     /translation="MFQIASPPAANPALMAAISDLEQELEHAISKPERDRWRDRWLDR
                     WWYKREMTPERRRVLGVIHETLGELRRLHALQRGVTHYDAQALEQSLVELIGRPGVAS
                     LGIPAAWEYVLRLQRLLLLVGDRHYVKTRLMAEWRIENSRPDYVFKSWSYFFDRAELE
                     KLVGKYEGDSVAEGSPDHRQAVEYLTHLSVERNSTSRNLAMNANSRTLYIDRLTWLLA
                     GLLLLLLGLIYVVSHSPLRFHNPLALVARLFEGSMLLSFGHPNFKHAIIAAIAGGVGS
                     ALSGFYKLRDEVKYLHDLRTFRAAMWAQPFVGAIAGALVFLILKSGILGLKLSVDGEW
                     WPAFAVYGFLAGFSEPFFLGLVSRAAGTVEDKDKKGEKGDKGEKGDKGEKGDTGFASP
                     PDSPLN"
     gene            complement(1936..>2519)
                     /locus_tag="VD968_19655"
     CDS             complement(1936..>2519)
                     /locus_tag="VD968_19655"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYE16665.1"
                     /translation="TTLRTITGLLSPREGRVVFEGEDISGMPTHKLVARGIAMSPEGR
                     GVFANLTVRENLQMGAYLKKNKQEIAEDMENGFRLFPRLKEREQQKAGTLSGGEQQML
                     AMARALMSRPRLLLLDEPSLGLAPLVVHTIFEAIEEIRGKGTTILLVEQNAHAALSHS
                     DRAYVLETGRIRMEGPSKELAADPRIKEAYLGE"
BASE COUNT          404 a          885 c          820 g          410 t
ORIGIN      
        1 aagatgaagt cgccgacggc cgtgacttcc gggctggtcg aagagggcgt gagcatcacg
       61 acgcgctcgg cctgcgcgac gggcgcggcc gcgagcgagc gcgagctgac tatctcgccg
      121 atgagggcgt gcgcccgcga ctcggcggcg agccgccgca cgacgcgctc cgtctcggcc
      181 gcgtccgagc gcgtgtcctg cactatcaac tcgacgcggc ggcccgcaac gcccccgcgc
      241 gcgttagcct cctcgaccgc cagccttatg ccgttcatgg cggagaggcc gtactgcgcc
      301 gtgtcgcccg tcagagacat gaaggcgccg aggcggaagg tcttgtccgg ctgttgctcg
      361 ccggtcgcgc cctcggccgg gcgctgcttc cgcccgcacc ctcccagcgg cgcggcggcc
      421 gccaacagca gcgccgccga caggactaag gttgtcgaag ccttcagcat tttcgtcccc
      481 ggcgattcta ccatcgcgcc cgccccggga tccttccgtc ggccgaaagc atacgcgtcg
      541 aagactattc tatagacaag cccgattgaa aaggataatc tgcgcgcctc cgcctcgccg
      601 ggcagttaac tcccagccga caccgcggcc cggcccgcga cccgtcccgt agccaccgaa
      661 ggccgaaact ccggcccgcc ccacccgagg agaagcccat gttccaaatc gccagccccc
      721 cggcggccaa ccccgccttg atggccgcta tctcagacct ggagcaggaa ctcgagcacg
      781 ccatatccaa gccggagcgc gacagatggc gcgacaggtg gctggacagg tggtggtaca
      841 agcgcgagat gacccccgaa aggcggaggg tgctcggggt gattcacgaa acgctcggcg
      901 agctgcgccg cctgcacgcg ctccagaggg gcgtcacgca ctacgacgcg caggccctcg
      961 aacagtcgct cgtcgagctg atcgggcggc ccggcgtggc ctcgctcggc atccccgccg
     1021 cgtgggagta cgtcctgcgc ctgcaacgcc tcctcctgct cgtcggcgac aggcattacg
     1081 ttaagacccg gctcatggcc gagtggcgga tagagaacag caggcccgac tacgtcttca
     1141 agtcgtggag ctacttcttc gacagggcgg agctggaaaa gctggtgggg aagtacgagg
     1201 gcgactccgt cgccgagggc agccccgacc accgccaggc cgtcgagtac ctcacgcacc
     1261 tctccgtgga gcgcaacagc acttcgcgca acctcgccat gaacgccaac agccgcacgc
     1321 tctacattga ccggctgacg tggctgctgg ccgggctgct gctcctgctg ctcggcctca
     1381 tctacgtcgt cagccacagc ccgctgcgct tccacaaccc gctcgccctc gtcgcgcgcc
     1441 tcttcgaagg gagcatgctt ctcagcttcg gccaccccaa cttcaagcac gccatcatcg
     1501 cggccatcgc gggaggggtc ggcagcgccc tgagcggctt ctacaagctg cgcgacgagg
     1561 ttaagtacct ccacgacctg cgcactttcc gggcggcgat gtgggcgcag cctttcgtcg
     1621 gggccatcgc gggcgcgctc gtcttcctca tcctcaagag cggcatcctc ggcctcaagc
     1681 tcagcgtgga cggcgagtgg tggcccgcct tcgccgttta cggtttcctc gcgggcttct
     1741 ccgagccgtt cttcctcggc ctcgtcagcc gcgccgccgg cacggtcgag gacaaggaca
     1801 agaagggcga gaagggtgac aaaggcgaga agggtgataa gggcgagaag ggcgacacgg
     1861 gcttcgcgtc gccgcccgac tcgcctttaa actagcctcc gggttattag aggcgcgcac
     1921 gcacgggggc ggcgctcact cgccgaggta ggcttccttg atgcgggggt ctgcggcaag
     1981 ctctttcgag gggccttcca ttcggatgcg gccggtctct aggacgtatg cgcggtcgga
     2041 gtggctgagc gctgcgtgcg cgttctgctc gacaagcagg atggtcgtac ccttgccgcg
     2101 tatctcctcg atggcctcga agatggtgtg gactacgagg ggcgcgaggc cgagcgacgg
     2161 ctcgtcgagg agtagcaggc gcggccgcga catcagggcc cgcgccatcg cgagcatctg
     2221 ctgctcgccg cccgagagcg tccccgcctt ctgctgctcg cgctccttga ggcgcgggaa
     2281 caggcggaag ccgttctcca tgtcctcggc tatctcctgc ttgttcttct tcaggtaggc
     2341 gcccatctgt aggttctcgc gcacggtgag gttcgcgaag acgcctcggc cctcgggcga
     2401 catggcgatg ccacgcgcga cgagcttgtg cgtgggcatc cccgatatgt cctcgccctc
     2461 gaagactacg cgcccctcgc gcggcgagag cagccccgta attgtgcgca gcgtcgtcg
//
LOCUS       DASPKR010000754         3131 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_514768, whole genome shotgun sequence.
ACCESSION   DASPKR010000754 DASPKR010000000
VERSION     DASPKR010000754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3131)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3131
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514768"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..247
                     /locus_tag="VD968_19660"
     CDS             <1..247
                     /locus_tag="VD968_19660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017978623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYE16666.1"
                     /translation="GEKQRVALARALVMRPTLLLCDEPTGNLDEKSAESVASLLLELH
                     ARQETILVVVTHSAELAARFPTRFRLSEGNLVDHSAG"
     gene            258..>3131
                     /locus_tag="VD968_19665"
     CDS             258..>3131
                     /locus_tag="VD968_19665"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HYE16667.1"
                     /translation="MLSLVRRNLAHYWRTNLAVVLGVGVAVSVLAGALLVGDSVRASL
                     RGLFLKRLGRASLLVNSTEFFRERLAEGVSADGEFARGGFTAACPVVLLGGALTHEES
                     GRRASGVQVYGVDERFWKFHGSGAVNNLGAGEVLLSRSLSGEVGARAGEAVLLRIENP
                     SEIPVESLHGREEDVGRTMRLTVGEQAEGAAEFSVRPSQAGVRAAFVPLRSLQKSIGR
                     EGQANAILVSAEGEEEGQARAERLRAVLRRHAAPEDVGVRLRALDGGRGLSLETESAI
                     VGDPLAEAAREAAARSGMGASPVLSYLANTVRAGGREIPYSLVTAVDADAFGRLRGKA
                     AGTENDIGVVGELPPIILNDWAAKDLGLTASAGETVELDYYLWQEGGRLKTETARFRL
                     AGVVPLEGEAADRDLVPEYTGITEAKSLADWDPPFPVELARVRPADEAYWHEHRTTPK
                     AFITIERGQELWGSRFGRLTSVRARPPEGADAAQALEDYRRNLLAVLDPTRAGLSVYD
                     VRAEGLDAARGATDFGEYFLYFSFFLVASALLLTALFFRLGVEQRLREIGVLRAVGFP
                     ASRVRAIFLWEGLVLAAAGSLLGLAGAYAYGRLIMHGLRTWWVGAVGTTALELHAAPP
                     SFLLGGAGGVVAALLCIVLTLRGLARSSARSLLAGGRGEEVQGGIGARRRLISRLPFV
                     RLPLFAPVLFGALGVGLLVAAAAGWVGQAAGFFGGGTLLLVALLALQSAWLRRGRAGG
                     IGDSGARAVAHLGARNATHRPGRSVLCITLIASAAFVIVAVDAFRREGRAAARDRKSG
                     DGGYQLMAESLLPVVHDPNTPEGRDALNLTAPEENDGAGGVKFARFRLRPGDDASCLN
                     LYRPRQPRILAPTPDFLREGRFSFQNSLAATNEEKANPWLLLERDSGGGAIHVAADAN
                     SAAYVLHMKLGDEFTLERGAGAEPVRLRLVATLSDSVFQGELVM"
BASE COUNT          412 a         1082 c         1148 g          489 t
ORIGIN      
        1 cggcgagaag cagcgcgtag cgctcgcccg cgcgctcgtg atgaggccga ccctgctcct
       61 gtgcgacgag cccacgggga acctcgacga gaagtctgcc gagtcggtcg cctcgctcct
      121 gctcgagcta cacgcgcggc aggagaccat cctcgtcgtc gtcacgcaca gcgccgaact
      181 ggccgcgcgc ttccccacgc gcttcaggct aagcgagggc aacctcgtgg atcactccgc
      241 cggctgaacc gcctgtgatg ctctcactcg tccgaagaaa tctcgcccac tactggcgca
      301 cgaacctcgc cgtggttctc ggcgtgggcg tggcggtgtc ggtgctcgcg ggcgcgctgc
      361 tcgtaggcga ctcggtgcgc gcgagcctgc gcgggctgtt cctgaagcgt ctggggcgcg
      421 cgagcctgct ggtcaactcg acggagttct tccgcgagcg gctggccgag ggggtgagcg
      481 ccgacggcga gttcgcgcgc ggcgggttta cggccgcctg cccggtcgtc ctgctcggcg
      541 gcgccctcac gcacgaggag agcgggcgcc gcgcctcagg cgttcaggtt tacggcgtgg
      601 acgagcgctt ctggaagttt cacgggagcg gcgctgttaa caacctcggc gcgggcgaag
      661 tgctcctgag cagaagcctg tcgggcgaag tcggcgcgcg cgcgggcgag gcggtgctct
      721 tgaggataga gaacccctcg gagattcccg tcgagtcgct gcacgggcgc gaggaagacg
      781 tgggccgcac gatgcggctg accgtgggcg aacaggcgga gggcgcggca gagttctccg
      841 tgcggccgag ccaggcgggg gtgcgcgcgg ccttcgtccc tctgcgctct ttgcagaaga
      901 gcatcggccg ggaggggcag gcgaacgcga ttctcgtctc ggccgagggc gaagaagagg
      961 ggcaggcgcg cgccgagcgc ctgcgcgcag tcctgcggag gcacgcggcg cccgaggacg
     1021 ttggcgtgcg actgcgcgcg ctcgacggcg ggcgcgggct ctctttagag acggaaagcg
     1081 cgattgtcgg cgacccgctc gcagaggccg cgcgcgaggc cgcggcgcgc tcggggatgg
     1141 gcgcctcgcc tgtgctctca tacctcgcga acacggtgcg cgcgggcggg cgcgagattc
     1201 cttactcgct cgtcacggcg gttgacgccg acgccttcgg gcgtctgcgc ggcaaggcgg
     1261 cgggaactga gaacgacatc ggcgttgtag gagaactgcc gccgataatc ctgaacgact
     1321 gggccgctaa agacctcggg ctcacggcct cggcgggcga gactgtcgag ctcgactact
     1381 acctctggca ggagggcggc cgtctcaaga cggagacggc gcggttccgg ctcgcgggcg
     1441 tcgtcccgct cgaaggcgag gcggccgacc gcgacctcgt ccccgagtac accggcatca
     1501 cggaggccaa gagcctcgcc gactgggacc cgcccttccc cgtcgagctc gcgcgcgtgc
     1561 gcccggcgga cgaggcttac tggcacgagc accgcacgac gccgaaggcg tttataacaa
     1621 tcgagcgggg gcaggagctc tggggctcgc gcttcggccg cctgacctcc gtgcgcgcgc
     1681 gcccgcccga gggcgccgac gcggctcagg cgctcgaaga ttacagacgg aacttgctcg
     1741 cggtgctcga ccccacgcgc gcggggctgt ctgtttacga cgtgcgggcc gaggggctcg
     1801 acgcggcgcg gggcgcgacc gacttcggcg aatacttcct ctacttcagc ttcttcctcg
     1861 tcgcgtcggc gctgcttttg acggcgctct tcttccgcct cggcgtcgag cagcgtctgc
     1921 gcgagatagg cgtgcttcgc gccgtcggct tcccggcgtc gcgcgtgcgc gcgatctttt
     1981 tgtgggaggg gcttgtgctc gccgccgccg ggagcctgct gggcctcgcc ggggcatacg
     2041 cctacggcag gctcatcatg cacggcctgc gcacctggtg ggtcggcgcg gtggggacaa
     2101 cggcgctaga gcttcacgcg gcgccccctt cgttcctttt gggaggcgcg ggcggcgtcg
     2161 tcgcggcgct tctctgcatc gtgctgacgc tccgggggct cgcgcgctct tcggcgcgga
     2221 gcctgctcgc gggcgggcgc ggcgaagagg tgcaaggggg aataggcgcg cgccgtcgtc
     2281 ttatttcgcg cctgcccttc gtaagacttc cgctcttcgc gcccgttctc ttcggcgcgc
     2341 tcggcgtcgg cctgctcgtc gcggcggcgg ccggttgggt cgggcaggcg gcgggcttct
     2401 tcggcggcgg gacgctcctg ctagtcgcgc ttctcgcgct ccagtcggcg tggctgaggc
     2461 gcgggcgcgc cggtggcata ggcgactccg gcgcccgcgc ggtcgcgcac ctcggagcgc
     2521 gcaacgcgac gcacaggccc ggccgcagcg tgctgtgcat cacgctcatc gcctccgccg
     2581 ctttcgtcat cgtcgccgtg gacgccttca ggcgcgaagg ccgcgcggcc gcgcgcgaca
     2641 ggaagtcggg cgacggcggc tatcagctca tggccgaatc gctcctgcca gtcgtccacg
     2701 acccgaatac cccggagggc cgcgacgcgc tcaacctcac ggccccggaa gaaaacgacg
     2761 gcgccggcgg cgtgaaattc gcgcgcttcc gcctgcggcc gggcgacgat gcgagctgcc
     2821 tgaaccttta ccgcccccga cagccgcgca tactcgcgcc cacgcccgac ttcctgcgcg
     2881 aaggccgctt ctccttccag aactctctcg ccgcgacgaa cgaggagaag gcgaacccgt
     2941 ggcttctgct tgagcgcgac tcgggcggcg gcgcgataca cgtggccgcg gacgcgaact
     3001 cggccgcata cgttctgcac atgaagctcg gcgacgagtt cacgctcgag cgcggcgcgg
     3061 gcgcggagcc cgtcaggctg cgtctcgtcg cgacgctctc cgacagcgtc ttccagggcg
     3121 agcttgtcat g
//
LOCUS       DASPKR010000755         6914 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_385677, whole genome shotgun sequence.
ACCESSION   DASPKR010000755 DASPKR010000000
VERSION     DASPKR010000755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6914)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6914
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_385677"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1229)
                     /locus_tag="VD968_19670"
     CDS             complement(<1..1229)
                     /locus_tag="VD968_19670"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HYE16668.1"
                     /translation="MPVTKSPSALPALRALLPLALAALCLAAPASARRRQQQPTPAQT
                     PPPRTGRAYETAPPARRTAPAAAQAQSPVTLTDVTAQSGINFRHSASPTSRKYLPETM
                     GGGVALFDFDNDNRLDIFFTNGAQLLDPMPKGAAPRKTDARFWNRLYRQKPDGTFEDV
                     TERAGLRGEGYSMGAAAADYDGDGLTDLYVTAYGANTLYRNRGDGRFEDVTARTNAAT
                     SGWSTSAGWLDYDRDGRLDLFVARYMDWDFERGDLHCGSPQMRAYCHPDNFKGASPVL
                     LRQKPDGTFEDVSARAGVADPDGKGLGVAFADFDNDGHTDIFVANDNARQFLFRNQGD
                     GTFEDVALLAGVGYDENGKSFAGMGVDAADYDNDGLVDVFVTALSNETYPLFRNAGEM
                     AFTYATGSSGVGLITLP"
     gene            1375..1890
                     /locus_tag="VD968_19675"
     CDS             1375..1890
                     /locus_tag="VD968_19675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16669.1"
                     /translation="MRLARDGFRLFLAVLALAAAARVAGAQETPVILTGSQLLRVVPT
                     GFYFEGQSAPTQLRNAAAARFGQSRHVIAGMVDTSGYSSEIRAKYEGFFITDSSVSVG
                     GEGLSAGAYGFGFTDDGKFNLFDVGGRPVLTAPTTRDARLRRPRPLMMTRDGDAVRLY
                     SGRSYVAITLR"
     gene            complement(1904..5617)
                     /locus_tag="VD968_19680"
     CDS             complement(1904..5617)
                     /locus_tag="VD968_19680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16670.1"
                     /translation="MRTKRPLRLASALLLVCSILAGAAPRPAAAGQGGGAAASLESLT
                     EGKVVNGFRAEALYLNDADRPFGARLRHQQTGFTLDFLQIQSVPQALLWVNSFPVSDR
                     GEPHTQEHLLLGKGNAGRAHSGLESMSLAGSTAFTMQWRTVYQFHTAAGPEVFYKLFE
                     SQTDSLLHPDYSDEEINREVSHWGYNENPADKSLRLEEKGTVYQEMVSSYDRPVFRLF
                     RSINQLVYGPAHPLALSAGGWPAAIREMRPEHIRKFHADNYRLGNMGMVASFPKEMAL
                     GDVLSRLDQILNRLEPKREARRFPSERDLPAAKPAPSGVIELVEYPHENEQQPGWVMF
                     AWPATLELGTQEKALLNLFLSNVAGDATTNLYKIFVDTKTKAMETGAKGVFAFLDDEM
                     VLGNPVYVGLTDVAPAYMTPENIANIRQRILDEMKRIAALPDNSPELTEFNSRLRNRV
                     IQNRRALSKFVNSPPGFGFRSSDAGWMTHLQDLNRTPGFRKSVTLKPELDNVEKLLAG
                     GRNVWRERIARWGLADKAPYGVAAVPRPQLIKQEQEAGSARSAAELERLAKAYGLAAG
                     DREAVLKRFREEYDAKTAELERLAKQSSTLKFLESPPLTLDDQLDFKVSKLAGGVPLV
                     ASNFENMTSATVGMALRLDGVPQEQLAYVSMLPALVSQTGVVRDGKAISFEEMSEALR
                     KEILALNAYFSTNFRTRRAELVVRGSGNDEAEARRAVEWMRLVLTSPDWRPENLPRIR
                     DVVDQTLSGMRNRMQGPEEYWVTDPADAYWRQDSPLLLATNSFLTQAHNVHRLRWMLK
                     DAGAAAERDAISAFLNSLSSAGLLLGDPVGHGSARAEAKAEAADAFKRRREELKALLA
                     HMQGKGEAAKIAPAVERHSEAFGRLPAGAKALAVEAAKDLEQILPDIPDETLAEDWRY
                     LVLQIRHDLLVPPAQALADLNAVRKSLLKTGGARLFYVGSAATQAKLQEGLGSLVAAL
                     EDAPLAPAKYREVRLIESRLRGRVGEKETPVFVGLMNPNTQGGVFLNSAPSVSYAEAD
                     NREELLDYLASRLYAGGGAHGIFIKTWGAGLAYSNGFRGSPATGRIGYYAERTPELPQ
                     TLRFVIGELKKAKPDPGLVEYAIALAFREFRSASPYEARGEAMAADIADGVPPETVRR
                     FRQALLELRRSPNLSDELFRRMGQVYARILPGYGTRARDVRGGIFYVIGPEKQLTAYE
                     QYLKTVEGDDAKLYRIYPRDYWMTFDPGAQGGD"
     gene            5806..6807
                     /locus_tag="VD968_19685"
     CDS             5806..6807
                     /locus_tag="VD968_19685"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HYE16671.1"
                     /translation="MNHIRYSVAACQTDLPNPVERREMRRNTERMLSMIDSAVAGAAP
                     FLPVRLVVFPEFAHAAPVFASAAELLDKLAVPIPNEHTEALERKAREHQIYIQTGTML
                     ESDRRWPGVVFNTTCLVGPEGVLYKYRKVNTWIPYEVHASPHDLEGYDEPLFPVADTP
                     IGRIGCAVCYDWLFPEAIRQLAANGAEVLVRVSAYMDPWGATPPMDWWTVVNRCRAIE
                     NTAYVVAANQGASLKHYPPYSWPGGSQVIDFDGRMLAEASPGPGERIVVAPVDISALR
                     HERRARRGHHMLAHLRTEAYPVYRGHIYPPKLGDGGEAPHSYERNNLLIDESKKRLP"
BASE COUNT         1046 a         2266 c         2430 g         1172 t
ORIGIN      
        1 taggggagcg tgatgagccc tacgcccgac gagcctgtgg cgtaggtgaa ggccatctcg
       61 cccgcgttgc ggaagagcgg gtaggtctcg ttcgagagcg ccgttacgaa aacgtcaacg
      121 aggccgtcgt tgtcgtagtc ggccgcgtca acgcccatgc cggcgaacga cttgccgttc
      181 tcgtcgtagc cgacgccggc gaggagcgcc acgtcctcga aggttccgtc accctggttg
      241 cggaagagga actggcgcgc gttgtcgttt gcgacgaaga tgtcagtgtg gccgtcgttg
      301 tcaaagtcgg cgaaagcgac gccgagcccc ttgccgtcgg ggtctgccac gcccgcgcgc
      361 gccgacacgt cctcaaaggt gccgtccggc ttctgccgga ggagcaccgg cgaggcgccc
      421 ttgaagttgt cgggatggca gtaggcgcgc atctgcggcg agccgcagtg gaggtcgccg
      481 cgctcgaagt cccagtccat gtagcgcgcg acgaacaggt cgagccggcc gtcccggtcg
      541 tagtcgagcc agcccgcgct ggttgaccac cccgacgtgg ccgcgttcgt tctggcagtc
      601 acgtcctcga agcggccgtc gccgcggttg cggtagagag tgttcgcgcc gtaggcggtg
      661 acgtataggt ctgtcaggcc gtcgccgtcg tagtccgcgg cggccgcgcc catcgagtag
      721 ccctcgccgc ggagccccgc gcgctcggtc acgtcctcga aggtgccgtc cggcttctga
      781 cggtagagcc ggttccagaa gcgtgcgtcg gtcttgcgcg gcgccgcgcc cttcggcatg
      841 gggtcgagga gctgcgcgcc gttggtgaag aagatgtcga gccggttgtc gttgtcgaag
      901 tcgaagaggg cgacgccgcc gcccatcgtc tcgggcagat acttgcgcga ggtgggcgag
      961 gccgagtgcc ggaagtttat gccgctctgc gccgtgacgt ccgtgagcgt gacgggcgac
     1021 tgcgcctgcg cggcggcggg tgccgtgcgg cgcgcgggcg gggcggtctc gtaggcgcgg
     1081 cccgtgcgcg gcgggggagt ctgcgcgggc gtcggctgct gttgccgtcg gcgcgcgctc
     1141 gcgggcgcgg cgaggcagag cgcggcgagc gcgagcggca ggagcgcacg tagcgcgggc
     1201 agggccgagg ggcttttcgt taccggcatg agcggctatg atgcgggcaa gcttcgcggg
     1261 agacttcggc gcgccgggat gccctcggcc ggcgcgccgt taggttgcca tactacagcc
     1321 cggcgttgtc ccccgacaaa cgggcgacca tcttgactac ggagggatgc atagatgagg
     1381 ttagccagag acggcttcag gctctttctc gccgtgctcg cgctcgccgc cgccgcgcgg
     1441 gtcgcgggcg cgcaggagac gccggtcata ctcacgggct cgcagcttct gcgcgtggtg
     1501 ccgacgggct tttacttcga ggggcagagc gcgccgacgc agttgcggaa cgccgcggcg
     1561 gcgcgcttcg gccagagccg ccacgtcatc gccgggatgg ttgacacttc gggttactcc
     1621 tcggagattc gcgccaagta cgagggcttc ttcatcacgg actcgtcagt ctcggtcggc
     1681 ggcgaggggc tttcggccgg cgcctacggc tttggcttca ctgacgacgg caagttcaac
     1741 ctcttcgacg ttggcggccg ccccgtcctc actgccccga cgacaaggga cgcgcgcctg
     1801 cgacgccccc gcccgctcat gatgacgagg gacggcgacg cggtgcgcct ctacagcggg
     1861 cgcagctacg tcgcgatcac cctcaggtaa ggcgcgtcgt cgttcagtcg cccccctgcg
     1921 ctccggggtc gaaggtcatc cagtagtcgc gcgggtatat gcggtagagc ttggcgtcgt
     1981 cgccctctac ggtcttcagg tactgctcgt aggccgtgag ctgcttctcg gggcctatga
     2041 cgtagaagat gccgccgcgc acgtcgcgcg ctcgcgtgcc gtagccgggc agtatgcgcg
     2101 catagacctg ccccatgcgc cggaacagct cgtcggagag gttcggcgag cgccgcagct
     2161 ccagcagcgc ctgacggaag cggcggacgg tctcgggggg gacgccgtcg gcgatgtcgg
     2221 cggccatcgc ctcgccgcgc gcctcgtagg gcgaggcgga gcggaactcg cggaaggcca
     2281 gcgcgattgc gtactcgacg aggcccgggt cgggcttcgc cttcttcagc tcgccgatga
     2341 cgaagcgcag agtctgcgga agctcaggcg tgcgctctgc gtagtagcct atgcggcccg
     2401 tcgcgggcga gccgcggaag ccgttcgagt aggcgaggcc cgccccccaa gtcttaataa
     2461 agatgccgtg cgcgccgccg cccgcgtaga ggcgcgaggc gaggtagtcg agcaactcct
     2521 cccggttgtc cgcctcagcg tagctgaccg agggggcgga gttgaggaag acgccgccct
     2581 gcgtgttcgg gttcatcagg ccgacgaaga cgggcgtctc cttctcgccc acgcggccgc
     2641 gcagccgcga ctcgatgagc ctaacttcac gatacttcgc gggcgcgagc ggcgcgtctt
     2701 cgagcgcggc gactagggag cccaagccct cctgcaactt cgcctgcgtc gcggccgagc
     2761 ctacgtagaa gaggcgcgcg ccgccggtct tgagcaggct cttgcggacg gcgttaaggt
     2821 cggcgagcgc ctgcgcgggc ggcacgagaa ggtcgtggcg aatctgtagg actaggtatc
     2881 tccagtcctc ggcgagcgtc tcgtcgggga tgtcgggcag aatttgttcg aggtctttgg
     2941 cggcctcgac ggccagagcc ttcgcgcccg cgggcagtcg gccgaaagct tccgagtggc
     3001 gctcgaccgc gggcgctatc ttcgccgcct cgcccttgcc ctgcatgtgc gcgagcagag
     3061 ccttcaactc ctcgcgcctc cgcttgaaag cgtcggccgc ttcggcttta gcctcagcgc
     3121 gcgccgagcc gtgaccgacg gggtcgccga gcagcaagcc tgccgacgag aggctgttca
     3181 ggaaagccga aatcgcgtcg cgctcggcgg cggcgcccgc gtcctttagc atccagcgca
     3241 ggcggtggac gttgtgcgct tgggtcagga acgagttggt cgcgagcagg agcgggctgt
     3301 cctgccgcca gtaggcgtcg gccgggtctg tcacccagta ctcctccggc ccctgcatgc
     3361 ggttgcgcat gccgcttaag gtctggtcaa ccacgtcgcg tatgcgcgga aggttctcgg
     3421 gccgccagtc ggggctcgtg agcacgaggc gcatccactc gacggcgcgg cgcgcctccg
     3481 cctcgtcgtt gcccgagccg cgcacgacca gctctgcgcg ccgcgtgcgg aagttcgtgc
     3541 tgaagtaggc gttcagggcg agaatctctt tacgcagcgc ctcgctcatc tcctcgaagg
     3601 agatggcttt gccgtcgcgc acgacgcccg tctgcgagac gagcgccggg agcatcgaga
     3661 cgtatgcgag ctgctcttgc gggacgccgt cgaggcgcag cgccatcccg acggtcgcgc
     3721 tcgtcatgtt ctcgaagttc gaggcgacga gaggcacgcc gcccgcgagc ttcgagacct
     3781 tgaagtctaa ctggtcgtcg agcgtgagcg gcgggctctc caaaaacttg agcgtgctcg
     3841 actgcttcgc cagtctctcc aactccgccg tcttggcgtc gtactcctcg cggaagcgct
     3901 tgagcaccgc ctcgcggtcg cccgccgcga ggccgtaagc cttcgctagc ctctcaagct
     3961 cggcggcgct gcgcgcgctg ccggcctcct gctcctgctt gatgagctgc ggcctcggca
     4021 cggcggcgac gccgtagggc gccttgtccg cgagccccca ccgcgcgatg cgctcgcgcc
     4081 agacgttccg gccgcccgcg agcagcttct cgacgttgtc caactccggc ttcagggtga
     4141 cggacttgcg gaagccgggc gtgcggttga ggtcttgcag gtgcgtcatc caaccggcgt
     4201 cggacgagcg gaagccgaag cccggcggcg agttgacgaa cttagagaga gcgcggcggt
     4261 tctgtatgac gcggttgcgc agccgcgagt tgaactcggt aagctccggc gagttgtcgg
     4321 ggagcgcggc gatgcgcttc atctcgtcga gaatgcgctg ccttatgttg gcgatgttct
     4381 cgggcgtcat gtaggccggc gccacgtccg tcagtcccac atagaccggg ttgccgagaa
     4441 ccatctcgtc gtcgaggaag gcgaagacgc ccttggcgcc cgtctccatc gccttcgtct
     4501 tcgtgtcaac gaaaatcttg tagaggttcg tcgtcgcgtc gcccgcgacg ttcgacagga
     4561 agaggttcag gagcgccttc tcctgcgtgc ccagttccag agtcgcgggc caggcgaaca
     4621 tgacccagcc gggctgctgc tcgttctcgt gcgggtactc gacaagctct atgacgccgg
     4681 agggggcggg cttcgccgcg ggcaggtcgc gctcggaagg gaagcggcgc gcctcccgtt
     4741 tgggctcaag ccggttgagt atctggtcga ggcgcgagag cacgtcgccg agcgccatct
     4801 ccttcgggaa cgaggcgacc atgcccatgt tgccgagccg gtagttgtcc gcgtggaact
     4861 tccttatgtg ctcggggcgc atctcgcgta tggcggcggg ccagccgccg gccgagagcg
     4921 cgagcgggtg cgcagggccg tacacgagct ggttgatgga gcggaagagg cggaagacgg
     4981 gccggtcgta ggagctgacc atctcctgat agaccgtgcc cttctcttcg agccgcagcg
     5041 acttgtcggc ggggttttcg ttgtagcccc agtggctcac ctcgcggttt atctcctcgt
     5101 cggagtagtc agggtgaagg agcgagtcgg tctggctctc gaagagcttg tagaagacct
     5161 cggggcctgc cgccgtgtgg aactgataga cggtgcgcca ctgcatcgtg aaggcggtcg
     5221 agccggccag agacatgctc tcaaggccgg agtgagcgcg cccggcgttg cccttgccga
     5281 gcaggaggtg ctcctgcgtg tgcggctcgc cgcggtcgga gacggggaag gagttgaccc
     5341 agaggagcgc ctgcgggacg gactggattt gcaggaagtc gagcgtgaag ccggtctgct
     5401 ggtggcgcag gcgggcgccg aagggccggt ctgcgtcgtt caggtagagc gcctccgcgc
     5461 ggaagccgtt tacgaccttc ccttcggtca gggattcgag tgacgcagcc gcgccgcccc
     5521 cctgcccggc cgcggccggc cgcggggccg cgcccgcgag tatcgagcag acgagcaaca
     5581 gcgccgaggc gagccgcaag ggtcttttcg ttctcatcga aaactcctgt cacaagaatt
     5641 gaagccggac ggaaagagtg ggccgtatgc ccagatgcta tccctccccg ccgccgacgg
     5701 tcaaacagtg agcgggcggc gggtgacaac gggcctgcgg cgagtttaga atcccctcgc
     5761 tcccgtctcc cgtcaccctt cgggcttcag tcaatcaggg catttatgaa tcacatcagg
     5821 tattccgtcg cggcctgcca gacagatttg ccgaaccctg tggagcgccg ggagatgcgg
     5881 cgcaacacgg agaggatgct ctcgatgatt gactcggccg tggccggggc ggcgccgttt
     5941 ttgccggtgc ggcttgtcgt cttccctgag ttcgcgcacg cggcgcccgt gttcgcgagc
     6001 gccgcggagc ttctcgacaa gctcgccgtc ccaatcccga acgagcacac cgaggcgctc
     6061 gaacggaagg cgcgcgagca ccagatttac atacagacgg ggacgatgct cgaatccgac
     6121 cgccgctggc ccggcgtcgt cttcaacacc acctgcctcg tcggccccga aggcgtgctc
     6181 tacaagtacc ggaaggtcaa cacctggatt ccctacgagg ttcacgcgag cccgcacgac
     6241 ctcgaaggct acgacgagcc gctgttcccc gtcgccgaca cgcccatcgg ccgcataggc
     6301 tgcgccgtct gctacgactg gctcttcccc gaggccattc gccagctcgc cgcgaacggc
     6361 gcggaagtcc tcgtgcgtgt ctcggcctac atggatccct ggggcgcgac gccgccgatg
     6421 gactggtgga ctgtcgtaaa ccgctgccgc gccatcgaga acacggccta cgtcgtcgcg
     6481 gccaaccagg gcgcgagcct caagcactac ccgccctact cctggccggg cgggagtcag
     6541 gtcatagact tcgacgggcg catgctggcc gaagcgagcc cggggccggg cgagcgcatc
     6601 gtagtcgcgc ccgttgacat ctccgccctc cggcacgagc gccgggcgcg ccgcggccat
     6661 cacatgctcg cccacctgcg cacggaagcc taccccgtct atcgcggcca catctacccg
     6721 ccgaagctgg gcgacggagg cgaggcgcct cactcctacg agcgcaacaa cctcctcata
     6781 gacgagtcaa aaaagcgact cccgtagcag ccgaaattta ggtttttgga tggggcgacg
     6841 aaaagttgaa caggcgcggg gcctcgcatg cggaaaaggg ctcgggcgcc cgtcacgcct
     6901 ccgcctgttc tcga
//
LOCUS       DASPKR010000756         5313 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_515583, whole genome shotgun sequence.
ACCESSION   DASPKR010000756 DASPKR010000000
VERSION     DASPKR010000756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5313)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5313
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515583"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..351
                     /locus_tag="VD968_19690"
     CDS             <1..351
                     /locus_tag="VD968_19690"
                     /inference="COORDINATES: protein motif:HMM:NF017442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF790 family protein"
                     /protein_id="HYE16672.1"
                     /translation="EKLPAAWARSGVEWALEPSGEIIPLGDSVFIPDFRLRRPSGAFV
                     HLEVLGFWTPRHLTERLAEFEHAGVGNFILAAWDELRGSRDPLTSVPANVIVFKKSLD
                     PAVVCLLADRLADA"
     gene            complement(348..1367)
                     /gene="rtcA"
                     /locus_tag="VD968_19695"
     CDS             complement(348..1367)
                     /gene="rtcA"
                     /locus_tag="VD968_19695"
                     /EC_number="6.5.1.4"
                     /inference="COORDINATES: protein motif:HMM:NF003246.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003963 - RNA-3'-phosphate cyclase
                     activity [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 3'-terminal phosphate cyclase"
                     /protein_id="HYE16673.1"
                     /translation="MLSIDGSFGEGGGQIIRTSLALSLVTGKAFRVYNVRARRAKPGL
                     QRQHLTAVTASAAIGGARVDGASVGSKEFTFHPGEVTPGEYRFTVGTAGSTMLVLQAV
                     LPPLLTAAEPSLLMFEGGTHNVHAPPFEFIQKTFLPLVNRSGPQVTVELQRYGFYPPG
                     GGRFNVYVEPSRQLSRLDIVERGAILSERARALVVNLPEPVGERELAVASEQLGWTLD
                     QLELESSTNAVSPGNVFTVQIESEHLTEVFTGIGERGVRAETIASRVVEEARRYLEIG
                     APVGEHLADQLLIPMALAGGGSYTTGPLSLHTTTNIEVIKRFLPVEIRTTQLTEEVWK
                     VEVEG"
     gene            complement(1414..1908)
                     /locus_tag="VD968_19700"
     CDS             complement(1414..1908)
                     /locus_tag="VD968_19700"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HYE16674.1"
                     /translation="MKRLLLLRHAKSSWGDPSLADFDRPLNERGLRAAPLMGRHMLER
                     KLRPGLVLSSPAERARRTAELVVEAARITAPLRFDERIYEATPARLVEVVSQSDESAD
                     EVLVVGHNPGTEELIELLTGESRRVPTAALARIRLDIEKWSELRPERSGRLEWLVRPK
                     DLEE"
     gene            complement(1922..2449)
                     /locus_tag="VD968_19705"
     CDS             complement(1922..2449)
                     /locus_tag="VD968_19705"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HYE16675.1"
                     /translation="MLVEDLMTHNVEACGPDASLAEAAAVMWRRDCGVVPVVGEGGRP
                     VGVITDRDICMALATRRAYASDVRVSEVMSRDVATCLHVDDVREALEVMREHQFNRLP
                     VVNGEGRLVGILSVGDVVRRTRKGKGKRRVSRKDTLATLRAIRRPRAGEGSAAEDDDE
                     DDEATVEDEAGGDAA"
     gene            2683..3009
                     /locus_tag="VD968_19710"
     CDS             2683..3009
                     /locus_tag="VD968_19710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S) ferredoxin domain-containing protein"
                     /protein_id="HYE16676.1"
                     /translation="MPGLKRIRKHVIACKGKDCEKRGGREALREMKSALRKLDLRDGV
                     LITRVDCLDQCEHAPVMVVYPDGVWYGGVGEHGGREIAARQIAEGSRAERGCEVLRDL
                     RAVKGE"
     gene            3017..3679
                     /locus_tag="VD968_19715"
     CDS             3017..3679
                     /locus_tag="VD968_19715"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HYE16677.1"
                     /translation="MGGRTIVVGDVHGCYDELLDLLGAASFSREDRLVCVGDLIVKGE
                     KNREVLDLFMSEARFSSVLGNHDRAVLRHWKGEGVRLKPAQQRCAEELESDRARYAEY
                     LDSLPLYIDLGEHVVVHAGLRPGVALAEQSAEDLTELRTLGPDRTSREGAPWYEAYDG
                     DKTVLFGHWPMSPPRRGPRAIGLDTGCVYGFQLTAYVVEAGEYVTVPARRAYSRPQGR
                     VA"
     gene            3727..4404
                     /locus_tag="VD968_19720"
     CDS             3727..4404
                     /locus_tag="VD968_19720"
                     /inference="COORDINATES: protein motif:HMM:NF014299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16678.1"
                     /translation="MISYGQHRFPGKLFVVEGTDGSGKSTQLALLYQWLRAEGRPVFF
                     SEWNSSPLVKGTTRRAKKRRLFTPTTFSLLHATDFADRTERDIIPPLKAGAIVLADRY
                     IYTAFARDVVRGCDRAWVRDLYRFAVRPTVAFFFRAPLDVAIDRIVSGRPELKYYEAG
                     LDMGWADDSEESFKIFQGKILEEYDRMVGEFGLTVIDATRSIERQQREMRKIVMRHLG
                     DEDGGDA"
     gene            4401..5105
                     /locus_tag="VD968_19725"
     CDS             4401..5105
                     /locus_tag="VD968_19725"
                     /inference="COORDINATES: protein motif:HMM:NF014299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16679.1"
                     /translation="MTREAAFYGTPLPGAEHEPLSGKLIVVEGTDGVGRSTHTALLRS
                     WLESRGHAVIDTGMTRSVLAGRGLKEAKAGTTLGRLTMQLFYAADFADRLENEMLPAL
                     RAGFVVLTDRYIYSAIARAVVRGVDPGWLRSIYGIALVPDLILYLRASGAEELVSRVL
                     SSGRKFDYWESGMDLNLGEDFYDSFVEYQTRLLREFDRMSGEYGFRTVDASRTIRRVA
                     ADLRRAVARVIDGGEE"
     gene            5119..>5313
                     /locus_tag="VD968_19730"
     CDS             5119..>5313
                     /locus_tag="VD968_19730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16680.1"
                     /translation="MKLAAIDIGSNSIKLVVAEAAAGGDSFSVLAREKEVVRLGHETL
                     TQGLLSPGAIARAAETVGRFR"
BASE COUNT          815 a         1802 c         1846 g          850 t
ORIGIN      
        1 gagaagctgc ccgccgcgtg ggcgcgctcg ggcgtcgagt gggcgctgga gccgagcggc
       61 gagataatcc ctttaggcga cagcgtgttc atacccgact tccgtctgcg ccgcccgtcg
      121 ggcgcgttcg tccaccttga agtcctgggc ttctggactc cgcggcacct cacggagcgg
      181 ctcgcagagt tcgagcacgc gggcgtcggc aacttcatac tcgccgcctg ggacgagctg
      241 cgcggcagcc gcgatcccct gacgagcgtc cccgcgaacg tcatcgtctt caagaagagt
      301 ttagacccag ccgtggtctg ccttttggcc gaccggctcg ccgacgccta gccctcgact
      361 tcgaccttcc agacctcttc cgtcaactgc gtggtgcgta tctcgacggg caggaaccgc
      421 ttgatgacct cgatgttggt cgtggtgtgg agcgagagcg gccccgtggt gtaggagccg
      481 ccgcccgcga gcgccatcgg gatgaggagc tggtcggcga ggtgctcgcc gacgggcgcg
      541 ccgatttcga ggtagcgccg cgcctcctcg acgacgcgcg aggctatcgt ctcggcgcgc
      601 acgccgcgct cgccgatgcc ggtgaagacc tcggtgaggt gctcgctctc tatctggacg
      661 gtgaagacgt tgccggggct cacggcgttc gtggaggatt cgagctccaa ctggtcgagc
      721 gtccagccga gctgctcgct cgcgaccgca agctcgcgct cgccgacggg ctcggggagg
      781 ttgacgacga gcgcgcgcgc acgctcggag agaatcgcgc cgcgctcgac gatgtctaag
      841 cgcgagagct gacggctcgg ctcgacatag acgttgaagc gcccgccgcc cggcgggtag
      901 aagccgtagc gctgtagctc gaccgtgacc tgcggcccgg agcggttgac gagcggcagg
      961 aatgtctttt gtatgaactc gaagggcggc gcgtggacgt tgtgagtgcc gccctcgaac
     1021 atgaggaggc tcggctcggc ggcggtcagg agcggcggga gcacggcctg aaggacgagc
     1081 atcgtgcttc cggccgtccc gaccgtgaag cggtactcgc cgggagtcac ctcgcccgga
     1141 tggaacgtga actccttcga gccgaccgag gctccgtcca cgcgcgcgcc gccgattgcg
     1201 gccgaggccg tcacggccgt caggtgctgg cgctgaaggc cgggcttggc gcgccgcgcc
     1261 ctcacgttat agacgcggaa cgccttgccc gtgacgagcg agagcgccag cgaggtgcgt
     1321 atgatctgcc cgccgccctc gccgaatgag ccgtctatac tcagcataaa gaagaggccg
     1381 gggagaagac tcgctttaac tacccctagc ctctcattcc tccaaatcct tcggcctgac
     1441 gagccattcg aggcggccgg agcgctcggg ccgcagctcc gaccacttct cgatgtctag
     1501 ccgtatgcgc gcgagcgcgg ccgtcggcac gcggcgcgac tcgcccgtga gcagctctat
     1561 aagctcctcg gtgccggggt tgtggccgac gactaagact tcgtcggcgc tctcgtcgga
     1621 ttgagagacg acttcgacca ggcgcgcggg tgtcgcctcg tagatgcgct cgtcgaagcg
     1681 caggggggcc gtgatgcgcg cggcctccac gaccagctcg gccgtccggc gggcgcgctc
     1741 ggccggcgac gagagcacaa ggccggggcg gagcttgcgc tccagcatgt gccggcccat
     1801 gagcggggcg gcgcgcaggc cgcgctcgtt cagggggcgg tcgaagtccg cgagcgaggg
     1861 gtcgccccag ctcgacttcg cgtggcgcaa aagcagcagt cgcttcatcg ctctttaaac
     1921 ttcaggccgc gtccccgccc gcctcgtcct cgaccgtcgc ttcgtcgtct tcatcgtcat
     1981 cctccgcggc ggagccctcc cccgcgcgcg ggcggcgtat ggccctgagc gtggcgaggg
     2041 tgtctttgcg cgagacgcgg cgcttgccct tgcccttgcg cgtgcggcgc acgacgtcgc
     2101 cgacggagag gatgccgacg aggcggccct cgccgttgac gacgggcagg cgattaaact
     2161 ggtgctcgcg catcacttcg agcgcctcgc gcacgtcgtc aacgtgcagg cacgtggcca
     2221 cgtcgcgcga catcacttcg gagacgcgca cgtccgaggc gtaggcgcgc ctcgtcgcga
     2281 gcgccatgca gatgtcccgg tcggttatca cgccgacggg gcggccgccc tcgcccacga
     2341 cggggacgac gccgcagtcg cgccgccaca tgacggccgc cgcctcggcg aggctcgcgt
     2401 cggggccgca cgcctccacg ttgtgagtca tcaagtcctc tacgagcatg tttcggcact
     2461 cctccgaaaa aattcgcgcg cccctgcggc tcatgcggcc gccgggggca gcgctcgctc
     2521 aacttcagat ggggttcgcc ctgcgcgggc gcccgagtct tttatcacag atggggggcg
     2581 cggcgtaaac ccgcgccggc cgccgcgggg cgggcgcgtt tgttgggccg gcggcggttg
     2641 tggtgtaatc gtgcgggaga taaacgcgaa ggggccgcga gtttgccggg gcttaagaga
     2701 atcaggaagc acgtcatcgc ctgcaagggc aaggactgcg agaagcgcgg cggccgcgag
     2761 gcgctccgcg agatgaagtc cgcgctcagg aagcttgacc ttcgcgacgg cgtgctcatc
     2821 acgcgcgtgg attgcctcga ccagtgcgag cacgcgcccg tcatggtcgt ctatcccgat
     2881 ggcgtatggt acggcggggt gggcgagcat ggcgggcgcg agatagccgc gcgccagata
     2941 gcggagggct caagggccga gcgcggctgc gaagtcctgc gcgacctgcg cgcggtgaaa
     3001 ggagagtgag gccgtcttgg gcgggcgcac catcgtcgtc ggggacgtgc acggctgcta
     3061 cgacgagctt ctcgacctgc tcggcgcggc ctctttctcg cgcgaagacc gcctggtctg
     3121 cgtcggcgac ctcatcgtca agggcgagaa gaaccgcgag gtgctcgacc tgttcatgtc
     3181 agaagcgcgc ttctcgtccg tgctcggcaa ccacgaccgc gccgtgctgc gccactggaa
     3241 gggcgagggc gtgaggctga agcccgcgca gcagcgctgc gccgaagagc tcgaatcgga
     3301 tcgggcgcgt tacgccgaat acctcgactc gctaccgctc tacatagacc tcggcgagca
     3361 cgtcgtcgtg cacgcggggc tacgccccgg cgtagcgctc gcggagcagt cggccgaaga
     3421 cctgaccgag cttcgcacgc tcggcccaga ccgcaccagc cgcgaagggg cgccctggta
     3481 cgaagcctac gacggcgaca agaccgtcct cttcggccac tggcctatga gcccgccgcg
     3541 gcgcggcccg cgcgcgatag gcttggacac cggctgcgtt tacggttttc aactcacggc
     3601 ctacgtcgtc gaggccggcg agtacgtgac agtcccggcc cgccgcgcct actcccggcc
     3661 gcagggccgc gtcgcctgac gggcgcgcgg catgggcgcg ggcgcgcggt ctctaatgtc
     3721 aaggcgatga tctcatacgg gcagcaccgc tttccgggga agctcttcgt ggtggaaggc
     3781 acggacggga gcgggaagtc aacgcaactc gcccttctct accagtggct cagggccgag
     3841 gggcgccccg tcttcttctc cgagtggaac tcttctccgc tcgtaaaggg gacgacgcgg
     3901 cgcgccaaga agcggcgcct cttcaccccc acgaccttct cgctcctgca cgcaacggac
     3961 ttcgccgacc gcaccgagcg cgacatcatc cctccgctca aggccggcgc gatagtcctc
     4021 gccgaccgct acatctacac tgcgttcgcg cgcgacgttg tgcgcggctg cgaccgcgcg
     4081 tgggtgcgcg acctctaccg cttcgccgtg cgccccacgg tcgccttctt cttccgcgcg
     4141 cccttagacg ttgccattga ccgcatcgtg tcgggccgcc ccgagcttaa atactacgag
     4201 gccggcctcg acatggggtg ggcagacgac tcggaggaga gcttcaaaat cttccaggga
     4261 aagattctcg aagagtacga ccggatggtc ggcgagttcg ggctgaccgt cattgacgcg
     4321 acgcgctcga tagagcggca gcagcgcgag atgcgcaaga tagtcatgcg acacctcgga
     4381 gacgaggacg ggggtgacgc ttgacgcgcg aggccgcctt ctacgggacg cctctgcccg
     4441 gcgccgagca cgagcccttg agcggcaagc tcatcgtcgt cgaaggcacg gacggcgtcg
     4501 gccgctcgac gcacacggcg ctgctgcgct cgtggctcga gtcgcgcggc cacgccgtca
     4561 ttgacacagg catgacgcgc tccgtgctcg ccgggcgggg cctgaaggag gcgaaggcgg
     4621 ggacgacgct cggccgcctc accatgcagc tcttctacgc ggccgacttc gcagaccgtt
     4681 tggagaacga gatgctgccg gcgctgcgcg cgggcttcgt cgtcctcacc gaccgctaca
     4741 tctactcggc gatagcgcgc gcggtcgtgc gcggcgttga ccccggctgg ctgcgctcca
     4801 tctacggaat cgcgctcgtc cccgacctga ttctctacct gcgcgcgtct ggcgccgagg
     4861 agctcgtctc gcgcgtgctc tcctcggggc ggaagttcga ctactgggag tcggggatgg
     4921 acttgaacct gggcgaggac ttctacgaca gcttcgtgga gtaccagacg cgcctgctcc
     4981 gcgagttcga ccgaatgagc ggcgagtacg gcttccgcac cgttgacgcc tcgcgcacga
     5041 tacgccgcgt cgccgcagac ctgcgccgcg ccgtcgcccg cgtcatagac ggcggggaag
     5101 agtaacggcc tgcctctcat gaagctcgcg gccatagaca tcggctcgaa ctcgataaag
     5161 ctcgtcgtgg ccgaggcggc cgccgggggc gactcgttct ccgtgctcgc gcgcgagaag
     5221 gaggtcgtca ggctaggcca cgagacgctc acgcagggac tgctctcgcc gggcgcaata
     5281 gcccgcgcgg ccgagaccgt cgggcgcttc cgc
//
LOCUS       DASPKR010000757         3794 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1284970, whole genome shotgun sequence.
ACCESSION   DASPKR010000757 DASPKR010000000
VERSION     DASPKR010000757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3794)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3794
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1284970"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..1281
                     /locus_tag="VD968_19735"
     CDS             73..1281
                     /locus_tag="VD968_19735"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYE16681.1"
                     /translation="MKTNRKALRLAALLACSLASVALTLPAAARPARTQTAPGVTAGS
                     VRIATLMPSSAALAEMGAAMREALAAYFEELNSRGGVHGRKIELKVIEGGATPAATVA
                     NVSALSAREPVFAVVGGISAGADTELAALAEREGLPFVGPSTLIPAAGASRRVFYILP
                     GATEQARALVNFAAASPALKGARLGVIASESELTSAAAARAEEQAKRAGISALPRVSY
                     PRGKFDAARAVSELKKAGASVLVVLGEGGDAAALLREAAAAGWSPHVLTPAIFTERDF
                     IASVPSAFKERVFVAFPSAPQDVTQAGAAELGELLGKYKVARRHVASQLSAVAAAKVF
                     AEALRLAGRELTRDALVSALEGLRDFDTGLTPRVSFGPGRRVGAAGAYVLTVDTESRQ
                     YTRPNWVTAE"
     gene            1326..2948
                     /locus_tag="VD968_19740"
     CDS             1326..2948
                     /locus_tag="VD968_19740"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HYE16682.1"
                     /translation="MVKLFNTTLLALALAATAAASGQATGKRPAAQRQTPAGARPTPP
                     PARPATAPAAQTPPAAATATAPGSVSALCGCEDKPLPAVLAVVNGVKITPADLSPETQ
                     QRVEQYQREVIEARKNELNLQINSILLEAEARKRGVTTTKLLEDEVVSKTVNPTEADA
                     RAYFEQNRARIESQAGRTLQFEEIKPQVVNYLLGQRQQEAAQRFSERLRAASDVKVNV
                     AEPTPPATAADRARVFATVAGRNITSGDVEDALRPLIASVQEAVYTLRNRDLEMKIND
                     ILLEAEAQKRGMTARALLDAEVNTKQPVVTEAQALDFYNKNKERVNGDFAQLKYQIIE
                     FLENQERAKLNESLADRLRGAAQLQSYLTPPVQPVYDISTADQPSKGNAAAKVTVVEF
                     TDFQCPSCAQAQPVIERLIAEYGDRVRFVVRDFPLAQHADARKAAEAAEAAREQGKFW
                     EYVPLLFRNQSALSVANLKQYATSVGLDRAKFDAALDSGKFAAQVERDLLDGQRVGVS
                     GTPTLFVNGRRVNGITYEAIKAAIDEALKTAK"
     gene            3346..>3794
                     /locus_tag="VD968_19745"
     CDS             3346..>3794
                     /locus_tag="VD968_19745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16683.1"
                     /translation="MGKIKAIFLASVLALAACAAAVAQAAQDPGITANGVIGEVVAVD
                     AGAKQLFVKTDAGSVVIVSVADNSRIIRNPPGETGVEKAKPMALAEMGAGDRVFARGA
                     VSDDRKTVMGRILIVNTKSDLEAKRAADRAEWQKRGIVGVVSAVNPQA"
BASE COUNT          663 a         1318 c         1271 g          542 t
ORIGIN      
        1 taaactcggg cgcgctttta accttgcccg gagcggctgc gcccccttcg gcgcgaagtt
       61 tcgccgacaa acatgaagac aaacagaaaa gccctccgcc tcgcggcgct gctcgcctgc
      121 tcgctcgcct ccgtcgcact aactttgcca gccgccgcgc gaccagcacg cacgcaaaca
      181 gcgcccggcg ttacggccgg gagcgtgagg atagctacct tgatgccttc gtcggccgcg
      241 ctcgccgaga tgggcgcggc gatgcgcgag gctctggccg cctacttcga ggagttgaac
      301 agccggggcg gcgtccacgg ccgcaaaata gagttgaagg taatcgaggg cggggcgacg
      361 cctgcggcga ctgtggcgaa cgtctcagct ctgtcggcgc gcgagccggt cttcgcagtc
      421 gtcggcggca taagcgcggg cgccgacacg gagctcgccg cgctggccga gcgcgagggg
      481 ctgccgttcg tcgggccttc gacgctcata cctgcggcgg gcgcgagccg ccgcgtcttc
      541 tacatactgc cgggcgcgac cgaacaagct cgcgctctcg tcaacttcgc ggccgcgtcg
      601 cctgccctca agggcgcgcg cctgggcgtc atagcgtcgg agtcggagct tacgtcggcc
      661 gcggccgcgc gtgccgagga gcaggcgaag agggcgggca tctcggcgct cccgcgcgtg
      721 agctacccgc gcgggaagtt cgacgccgcg cgcgccgtct cggagttgaa gaaggcgggc
      781 gcctctgtct tggtcgtgct cggcgagggc ggcgacgccg cggcgctcct gcgcgaggcg
      841 gcggccgcgg ggtggtcgcc gcacgtcctg acgccggcca tattcaccga gcgcgacttc
      901 atcgcgagcg tgccgtccgc gttcaaagag agggtcttcg tggccttccc gagcgcgccg
      961 caggatgtta cgcaggccgg cgccgcagag ttgggcgagc tgctcggcaa gtacaaagtc
     1021 gcgcggcgcc acgtcgcctc ccagctctcg gccgtggcgg cggcgaaggt cttcgccgaa
     1081 gcgttgaggc tcgcgggccg cgagttgacg cgcgacgcgc tcgtaagcgc gttggaaggc
     1141 ttacgcgatt tcgacacggg gctcacgcca cgcgtaagct tcggccccgg ccgcagggtc
     1201 ggcgcggcgg gcgcttacgt cctgacggtt gacacggagt cgaggcagta cacgcggccc
     1261 aactgggtca ccgcggagtg atcgtcgctt acgaattttt taagacgagg gaaaagacaa
     1321 aactgatggt caagctcttt aacacgacgc ttctcgcgct cgcgctcgcg gccacggccg
     1381 ccgcgtcggg gcaggctacc ggaaagcgcc cggccgcgca gaggcagacg cccgccggcg
     1441 cgcgcccgac gcccccgccc gcgcgccccg ccaccgctcc tgccgctcag acgccgcctg
     1501 ccgccgcgac ggcgaccgca cccggctccg tctcggcgct ctgcggctgt gaggacaagc
     1561 cgctgccggc cgtgctcgcc gtcgtcaacg gcgtgaagat aacgcccgcc gacctgagcc
     1621 ccgagacgca acagagggtc gagcagtacc agagggaggt catcgaggca cgcaagaacg
     1681 agctcaactt gcagataaac tccatactgc tcgaggctga ggccaggaag cgcggcgtga
     1741 cgacgacgaa gctgctggaa gacgaggtcg tctccaagac cgtcaacccg accgaggcgg
     1801 acgcgcgcgc gtacttcgag cagaaccgcg cgcgcataga gtcgcaggcc ggccgcacgc
     1861 tccagttcga ggagattaag ccgcaggtag taaactacct cctcggccag cggcagcagg
     1921 aggccgcgca gaggttctcc gagcgcctgc gcgcggcctc agacgtgaag gtgaacgtcg
     1981 ccgagcccac gccgcccgcc accgcggccg accgcgcgcg cgtcttcgcg accgtcgccg
     2041 gcaggaacat aacctcgggc gacgtggagg acgcgctccg gcccctgata gcgagcgtgc
     2101 aggaggccgt ctataccctg cgcaatcgcg acctcgaaat gaagattaac gacatcctgc
     2161 tcgaagccga ggcgcagaag cgcggcatga cggcgcgcgc cctgctcgac gcggaggtca
     2221 acacgaagca gcccgtcgtc acggaggcgc aggccctcga cttctacaac aagaacaagg
     2281 agcgcgtgaa cggcgacttc gcgcagctca agtaccagat catcgagttc ctcgaaaatc
     2341 aggagcgggc caagctgaac gagtcgcttg ccgaccgcct gcgcggcgcc gcgcagttgc
     2401 agagctacct gacgccgccc gtgcagcccg tctatgacat ctcgacggcc gaccagccct
     2461 cgaagggcaa cgccgcggcc aaagtcaccg tcgtcgagtt caccgacttc cagtgcccga
     2521 gctgcgcgca ggcccagccc gtcatcgagc gcctcatcgc cgagtacggc gaccgcgtgc
     2581 gcttcgtcgt gcgcgacttc ccgctcgcgc agcacgccga cgcccgcaag gccgccgagg
     2641 cggccgaggc cgcgcgcgag cagggcaaat tctgggagta cgtccctctg ctcttccgca
     2701 accaatcggc cctatcggtc gctaacctca agcagtacgc tacatccgtc gggctcgacc
     2761 gcgccaagtt cgacgcggcg ctcgactcgg gcaagttcgc agcacaggta gagcgcgact
     2821 tactcgacgg gcagcgcgtc ggcgtctcgg gcactcccac gctcttcgtt aacggccggc
     2881 gcgtcaacgg catcacatac gaggcgataa aggccgcgat agacgaggcg ctgaagaccg
     2941 cgaaataaaa ccaggccctg cgggagattc gcgggcgcgg ctcgttccgg cgggccgcgc
     3001 ccctttcatt tgcgcgcggc ggatccgcaa catcgtaatt tattcacgaa attgtgccaa
     3061 cgaaagaggg gcctcgcgcg tctaacaccg ttcgcctccg acgcgctccc cccggagggg
     3121 tttgcgtgga actttccgcc cggccgggcg gaatcggtaa ggttgggctc cccttcggcg
     3181 gcgctctttc cgcacaggtt ttggaacaat acgtgcggca ggcacgtaga aatactgtca
     3241 ctcgacggcc gggcgcctcg gtgccctctc acctttgaac agtcggaaac ttaaagcgcc
     3301 ggtcgcagct tctacggggc caggcgacca ggggaaattc acgaaatggg taaaattaag
     3361 gcgattttcc tcgcctccgt cttagcgctg gccgcgtgcg cggccgcagt ggcgcaggcg
     3421 gcgcaagacc ccggcatcac ggccaacggc gtcatcggcg aggtcgtcgc cgtggacgcg
     3481 ggcgccaagc agctcttcgt caagaccgac gccggctcgg tcgtcatagt ctcggtcgcc
     3541 gacaactcgc gcataatccg caacccgccg ggcgagaccg gcgtcgagaa ggccaagccg
     3601 atggcgctgg ccgagatggg cgccggcgac cgcgtgttcg cgcgcggcgc cgtctcggac
     3661 gaccgcaaga cggtgatggg ccgcatcctc atcgtcaaca cgaagtccga cctcgaagcc
     3721 aagcgcgccg ccgaccgcgc cgagtggcag aagcgcggca tcgtcggcgt cgtctcggcc
     3781 gtcaacccgc aggc
//
LOCUS       DASPKR010000758         9004 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_766770, whole genome shotgun sequence.
ACCESSION   DASPKR010000758 DASPKR010000000
VERSION     DASPKR010000758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9004)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9004
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_766770"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..326)
                     /locus_tag="VD968_19750"
     CDS             complement(<1..326)
                     /locus_tag="VD968_19750"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYE16684.1"
                     /translation="MAYGWEGEKVRLVPLEKEKHLSNVLAWMNDPDTTETILGGDLPL
                     ARAAEEEFFDRVAGKMEAHPADIVFAVETLAGEHVGLAGLHRIQWRHGAALTGTIIGP
                     PESRGKG"
     gene            complement(397..1395)
                     /locus_tag="VD968_19755"
     CDS             complement(397..1395)
                     /locus_tag="VD968_19755"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HYE16685.1"
                     /translation="MRPETQTETAAPAAEGERAPVILVADDEPVNLALIKRRLEWEEY
                     EIHTAENGGEAVEAARRLLPDLVMLDVMMPVLDGLQACRLLKEDPSTRDIPVIFLSAL
                     DDTGTKVSGLALGADDYISKPFSVEELLARVRVAIRLKRERDRLRESADEASRRAQAA
                     SEMSMTDALTGLLNRYGLQRALQRELAEARRYSRPLACLLIDLDYFKSVNDTFGHAAG
                     DTALAQMARVLTEAVRGSDVVCRYGGEEFLVLAPETGAEGALAIAEKIRLATSERLFG
                     DERRFFPLTVSVGAAELRDSESGNDMIARADEALYQAKQAGRNRVEGAGADRFENS"
     gene            1675..2118
                     /locus_tag="VD968_19760"
     CDS             1675..2118
                     /locus_tag="VD968_19760"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYE16686.1"
                     /translation="MRRREGDGCPVWGALQVLGDKWTMLIVRDLARGPRRTTELLSGL
                     HPISSRTLMDRLRDMESDALIERRDLGGSPPHVEYALTRRGLLLTPLLAALRDAGEAL
                     DCNACDDRLARHGAYCGACPRESGASAGPAPSRRAPAADDSIVLL"
     gene            2214..3410
                     /locus_tag="VD968_19765"
     CDS             2214..3410
                     /locus_tag="VD968_19765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16687.1"
                     /translation="MAATSPPHAPQGEPPAHRERRRRAPPLRDSEASLMVGLIKAVAW
                     PAAAVLVAAAALQALPRPLPVGTLSVRPEVVTGLAWPLVALVFLLLLRKPLSTFLSGI
                     GQRVSKLSVGVVALELSQVAELRPWSGPSLEDIRRPEPARSPVGSMPGSMLSSISVQV
                     DWGEPADYTIINLGVGKSWLTSRLFILAVLIERMRGVRCLVFLAEEAGRERFVGTALP
                     REVRWAFAKECPWLEAAYVRAYHKAVGGNDPKYMTHGSTFITTAQGGLTVPVAQQLLT
                     SFLDEVQAKGSPAPYAMMMSSPPGPAPAHGEDWQELRQGALRERAAWLDEGRLRRIMG
                     DHFYDSWCPEEIDAPAEERVRRVLRRAAPFVAVLGEGHRFKSLVDRQALLEALAVKVR
                     SEGAGK"
     gene            3464..4237
                     /locus_tag="VD968_19770"
     CDS             3464..4237
                     /locus_tag="VD968_19770"
                     /inference="COORDINATES: protein motif:HMM:NF025033.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYE16688.1"
                     /translation="MDVREHNRRAWDMEVERGGEWSTPVGPEEIEAARRGLWSVKLTE
                     TRPVPRGWFPADLRGLEVLSLAGSGGQQAPVLAAAGARVTVLDNSPRQLTQDRLVAER
                     EGLDVKTIEGDMADLSAFDDESFGLVFHPVSNLFVPDVRPVWREAFRVLRPAGLLLAG
                     FINPAFFIFGSETDRHDELVVRHSLPYSDLRDMPEEERARLVASGEALEFGHTLEDQI
                     GGQLDAGFHITGLYEDRHRSMRIAQFMPTYIATRALKPV"
     gene            complement(4263..5399)
                     /gene="trxB"
                     /locus_tag="VD968_19775"
     CDS             complement(4263..5399)
                     /gene="trxB"
                     /locus_tag="VD968_19775"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HYE16689.1"
                     /translation="MAKETLHREVVIIGSGPAGLTAAIYAARADLRPLVVHGPQPGGQ
                     LTITTDVENYPGFAQGIQGPELMQQFEEQAKRFGTEFLTALIERVDLSSRPFKLWTED
                     HEIRADTLIVASGASAKWLGVPGEAPAPHGLGGLGVSACATCDGFFFRGKPIVVVGGG
                     DTAMEEANFLTRYASRVTVIHRRDTLRASKIMQDKAFKNPKIDFMWNTAVTEILGSQE
                     TGVTGVRLKSTETGEESEFACEGVFVAIGHKPNTDIFRGWLDMDDVGYIKTAGRSMAT
                     NIPGVFACGDAQDSFYRQAVTAAGTGCMAAIDAERFLDSLPVPMPDGEEVTIEGERVT
                     ADQEQIIMPDGEVIPNHPAEFESDGQTAEKVGVVYTRPSSELAS"
     gene            5598..6518
                     /locus_tag="VD968_19780"
     CDS             5598..6518
                     /locus_tag="VD968_19780"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HYE16690.1"
                     /translation="MSTSLNESGGARPTIERVAVLGAGTMGHGIAQVAAMCGYRVTLR
                     DISDELVSKGMRAVESNLSKGVGRGKVTEEERERALSNLSATTRLEETAGADLYVEAV
                     PERLDLKRETLRAVEALNSTPFVFATNTSSLSITEIAEGSRRPERVVGMHFFNPVHIM
                     RLVEIVVGRDTARETVEAVRGVAVRMKKEPITVRDVPGFASSRLGVALGLEAMRMVEE
                     GVAGAKDIDTAMELGYNHPMGPLRLTDLVGLDVRLQIAEYLYAKLGTERFRPPDLLRR
                     MVAEGRLGKKTGEGFYKWETGEQKAEGGTQ"
     gene            6615..6995
                     /locus_tag="VD968_19785"
     CDS             6615..6995
                     /locus_tag="VD968_19785"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HYE16691.1"
                     /translation="MSRPTNEERRFALRMSLRLPIVVSGRAEDGAAWSEPTETDDIST
                     LGALFHLNQKVSRGDQLYLRAHRPDGSPIEATARVVRTAPAIYGTARVGVQIMEPTDN
                     WLRLFVSWVADEQASSSPEGEQQQ"
     gene            7096..7878
                     /locus_tag="VD968_19790"
     CDS             7096..7878
                     /locus_tag="VD968_19790"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYE16692.1"
                     /translation="MASYETLLLERRGRVALITINRPQKLNALNIQTRAEGAAALDEL
                     RDDESVRVVVITGAGEKAFVAGADISEFEGRTAVTQRDVMTARSLFNAVDTFPKPVIA
                     MINGFCLGGGCELALSCDLRVAGEGARFGQPEINLGIIPGGGGTQRLTRLVGEGKAME
                     LILTGDMIDAQTAYTLGLVNLVVPAADLEAKTMELANRIAEKSPVALRMAKEAVKAAS
                     RSNLDEGLRREIDLFAICFSSADKEEGVRAFLEKRKAEFTGR"
     gene            complement(7957..8961)
                     /locus_tag="VD968_19795"
     CDS             complement(7957..8961)
                     /locus_tag="VD968_19795"
                     /inference="COORDINATES: protein motif:HMM:NF012618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HYE16693.1"
                     /translation="MRALPALLLCLLAAAAAHAQRARRGAEPWGLKFTIDAHTETVYA
                     VEFLPDGRTLVTGSQDGSVRLWDMRTGEQTAALVSEGPGVGCVAASPDGGLIADCSDG
                     QEELYVRVWDAHTHKLLRSIGGHEDGVYDVAFSPDSRVLATGGRDGVVKLWNPRTGAL
                     LRTLRGHGDAVTDMAFSPDGSLLATGGAAGDKAVRLWDVRTGRLARTLRGHADWVTSV
                     AFSPDGSTVASASRDKTIILWGARTGAKRTVLGQPHMVYEVDYSPDGSLLAACGASKD
                     VWLLDARTGRLLGEFGGHDDEIAEIRFSRRGDALATGGYDSLVKLWAAPPARPRRRSR
                     "
BASE COUNT         1412 a         3046 c         3090 g         1456 t
ORIGIN      
        1 cccttaccgc gcgactccgg ggggccgatg atcgtgccgg tcagcgcggc gccgtgccgc
       61 cactgtatgc ggtgaaggcc cgcgagccct acgtgctcgc ccgcgagggt ctcgacggcg
      121 aagacgatgt cggccgggtg agcctccatc ttccccgcga cgcggtcgaa gaactcctcc
      181 tcggcggcgc gagcgagcgg caggtcgccg ccgaggatcg tctcagtcgt gtcagggtcg
      241 ttcatccacg ccagcacgtt cgagaggtgc ttctcctttt cgagcggcac gagccgcacc
      301 ttctcgccct cccacccgta agccatcgcc cacctccctc gattgtggtc tcactcaaca
      361 cccccgcgtg aggaagaatt aaacgcgaag gcgccattaa gagttctcaa aacggtcggc
      421 gccggcgcct tcgactcggt tgcggccggc ctgcttggcc tggtagaggg cctcgtcggc
      481 gcgggcgatc atgtcgttac cggactcgga gtcgcgaagc tcggccgcgc cgacgctgac
      541 ggtcagcggg aagaagcggc gctcgtcgcc gaagaggcgc tcggaggtgg cgagccggat
      601 tttctcggcg atggcgagcg cgccctccgc gccggtctcg ggcgcgagca ctaaaaactc
      661 ctcgccgccg tagcggcaca ccacgtcgga gccgcgcacg gcctcggtga gcacgcgcgc
      721 catctgcgcg agcgccgtgt cgcccgcggc gtggccgaag gtgtcgttga ctgacttgaa
      781 gtagtcgagg tcaatgagga ggcacgcgag cgggcgggag tagcggcggg cctcggccag
      841 ctcgcgctgt agggcgcgct gaaggccgta gcggttaagg agccccgtga gcgcgtctgt
      901 catggacatc tcgctcgcgg cctgcgcgcg gcggctggcc tcgtcggcgc tctcgcgcag
      961 gcggtcgcgc tcgcgcttga gccgtatggc tacccggacg cgcgcgagca gctcctcgac
     1021 gctgaagggc ttcgagatgt agtcgtcggc gccgagcgcg aggccgctca ccttcgtccc
     1081 cgtgtcgtcc agcgcggaga ggaatatgac gggtatgtcg cgcgtcgagg ggtcttcctt
     1141 gagcagccgg caggcttgca ggccgtcgag cacgggcatc atcacgtcga gcatgacgag
     1201 gtcgggcagg agccggcggg ccgcctcgac ggcctcgccg ccgttctcgg ccgtgtgtat
     1261 ctcgtactcc tcccactcga gcctgcgctt gatcagggcg aggttgacgg gctcgtcgtc
     1321 ggcgacgagt atgacgggcg cgcgctcgcc ctcggcggcc ggcgcggccg tctcggtttg
     1381 agtttcgggt ctcatacaaa aattcccgcg cggcacgcga cgcctgactt acgaagcggc
     1441 gcggcactcc ttacgcatcg gggcttgagg atgccaacgg ggccgtgagg gctaacgggc
     1501 aagttgtcgg gaagggggct tgaaccgttc ccgagtatct tagaatagaa atccgcgcac
     1561 cgtaaaggcg cctctttatg ttaagctgcg gcgcacttgt tccatagagg cccgcgccgc
     1621 ctgcccgccg gcacgcggcg cggccccacg ccctacggaa gaggacgaca cttcatgcga
     1681 cgacgcgaag gtgacggttg ccccgtctgg ggcgctctgc aagtcctcgg cgacaagtgg
     1741 acgatgctca tagtccgcga cctcgcgcgc ggcccgcgcc gcacgaccga gctcctgtcg
     1801 ggcctccacc ccataagcag ccgcacgctc atggacaggc tgcgcgacat ggagtcggac
     1861 gcgctcatcg agcggcgcga cctgggcggg agccccccgc acgtcgagta cgcgctcacg
     1921 cgccgcggcc tcctgctcac gccgcttctg gccgcgctgc gcgacgcggg cgaggcgctc
     1981 gactgcaacg cctgcgacga ccgcctcgcg cgccacggcg catactgcgg cgcgtgccct
     2041 cgcgagtcgg gcgcctccgc gggtcccgcg ccctcgcgcc gcgcgcccgc cgcggacgac
     2101 tccatcgtgc tgctttagac atgcccggcg gcgggccgcc ataagtcgcg gctaagcccg
     2161 cccccgcggg cgcccgcctc gcggcctcgc tccacacccc gaggggaacg atcatggcag
     2221 ctacaagccc cccgcacgca cctcaaggag agccgccggc tcaccgggag aggcgccggc
     2281 gcgcgccgcc gctgcgcgac tcggaggcgt cgctgatggt cgggctgatc aaggccgtcg
     2341 cgtggcccgc ggccgcggtc ttggtcgccg ccgcggcgct ccaggcgctc ccgaggccgc
     2401 tgcccgtcgg caccctgtcg gtcaggccgg aggtcgtcac ggggctcgcg tggccgctcg
     2461 tcgccctcgt cttcctgctg cttctgcgca agcccctctc gactttcctc tcgggaatcg
     2521 ggcagcgagt gtcgaagctg tcggtcggcg ttgtggcgct ggagctgtcg caggtcgcgg
     2581 agcttcggcc gtggtctggc ccgtcgctcg aagacatccg gcggcccgag ccggcgcgct
     2641 cacccgtggg aagtatgccg ggcagtatgc tgagcagcat atccgtgcag gttgactggg
     2701 gcgagcccgc cgactacacg atcatcaacc tcggcgtagg taagagttgg cttacttcgc
     2761 gcctgttcat cctcgccgtg ctgatcgagc gcatgcgggg cgtgaggtgc ctggtcttcc
     2821 tcgcggagga ggccggccgc gagcggttcg tcggcacggc gctgcccagg gaagttcggt
     2881 gggctttcgc caaagagtgc ccgtggctcg aagccgccta cgtccgggcc tatcataagg
     2941 cggtgggcgg caacgaccct aaatacatga cgcatggctc caccttcata accacggccc
     3001 aaggcggctt gaccgtgccc gtggcgcagc aactgcttac gtcttttctc gatgaagttc
     3061 aggcgaaagg ctcgcccgcc ccgtatgcga tgatgatgtc gtccccgccc ggcccggcgc
     3121 ccgcgcacgg cgaagactgg caagagctgc ggcagggcgc acttcgggag agggcggcgt
     3181 ggctcgacga gggcaggcta aggcggatca tgggggatca cttttacgac tcgtggtgcc
     3241 cggaggagat tgacgcgccc gccgaggagc gtgtgcgccg cgtgctgagg agggccgcgc
     3301 ctttcgtagc cgtgctggga gagggacata ggttcaagag cctcgttgac cggcaggcgc
     3361 tgctcgaagc gttggccgtt aaagtgagaa gcgaaggcgc gggcaaatag ctcttcgggc
     3421 gggctgaagc ctcgctggcg agttccggat tctggaggaa gtcttggacg ttcgtgagca
     3481 caaccggcga gcgtgggaca tggaggtgga gcgcgggggc gagtggtcaa cgcccgtggg
     3541 gccggaggag atagaggccg cgcggcgggg gctctggtct gtgaagctga cggagacgag
     3601 gcccgtgccg cgcgggtggt tcccggcaga cctgcgcggc ctcgaagtgc tatcgctggc
     3661 cgggagcggc gggcagcagg cgccggtgct cgcggccgcg ggggcgcgcg tcacggtgct
     3721 cgacaactcg ccgcgccagc tcacgcaaga ccgattggtg gccgagcgcg aagggctcga
     3781 cgtaaagaca atcgagggcg acatggcaga cctctccgcc ttcgacgacg agagcttcgg
     3841 cttggtcttt catcccgtct cgaacctctt cgtcccggac gtgcgccccg tctggcgcga
     3901 ggcgttccgg gtgctgcggc ccgctgggct cctgctcgcg ggcttcatca accccgcctt
     3961 cttcatcttc ggctcggaga cggacaggca cgacgagctt gtggtcaggc actctcttcc
     4021 ctactcggac ttgcgggaca tgcccgagga ggaacgcgcg cggctcgtcg cctcgggcga
     4081 ggcactggag ttcggccaca cgctcgaaga ccagataggc ggccagctcg acgcgggctt
     4141 tcacatcacg ggcctctacg aagaccgcca ccgcagcatg cgtatcgcgc agttcatgcc
     4201 gacctacata gccacgcgcg ccctcaagcc cgtgtaggaa cgctcgtcaa ggccggcgcg
     4261 cgtcaggacg caagctcgct ggaggggcgc gtgtaaacga cgccgacctt ctcggcggtc
     4321 tgcccgtccg actcgaactc ggccgggtgg ttggggatga cctcgccgtc gggcatgatt
     4381 atctgctcct gatcggccgt gacgcgctcg ccctcgattg tgacctcctc gccgtcgggc
     4441 atggggactg gaaggctgtc gaggaagcgc tcggcgtcta tggcggccat gcagcccgtg
     4501 cctgctgccg ttacggcctg gcggtagaag gagtcctgcg cgtcgccgca ggcgaagacg
     4561 ccggggatgt tggtcgccat cgagcgcccg gccgtcttta tgtagccgac atcgtccatg
     4621 tcgagccagc cgcggaatat gtccgtgttc ggcttgtggc cgatggcgac gaagacgccc
     4681 tcgcacgcga actccgactc ctcgcccgtc tcggtgctct tcaggcgcac gcccgtgacg
     4741 cccgtctcct gcgagccgag gatctcggtg acggcggtgt tccacatgaa gtcaatcttc
     4801 gggttcttga acgccttgtc ctgcattatc ttcgacgccc gcagcgtgtc ccggcggtgt
     4861 atgaccgtga cgcgcgaggc gtagcgcgta aggaagttcg cctcctccat cgcggtgtcg
     4921 ccgccgccta cgacgacgat gggcttgccc cggaagaaga agccgtcgca cgtggcgcac
     4981 gcggagacgc ctaagccccc gaggccatgc ggcgccggcg cctcgcccgg cacgcccagc
     5041 cacttggccg aagcgcccga ggcgactatc agggtgtcag cgcgaatctc gtgatcctca
     5101 gtccagagct tgaaggggcg cgagcttaag tcaaccctct cgattaaggc cgttaggaac
     5161 tccgtgccga aacgcttggc ctgctcctca aactgctgca taagctccgg cccctgtatc
     5221 ccctgcgcga agccggggta gttctcgaca tcagtggtga tggtgagctg gccgccgggc
     5281 tgcgggccgt gtacgacgag gggccgcagg tctgcgcggg cggcgtagat cgccgccgtc
     5341 aggccggccg ggccggagcc gatgatgacg acttcgcggt ggagagtctc ttttgccatg
     5401 tcttaggttt tacgcctcct tgcgggcgag agtctgtaag cgcacttaca aacgagggcg
     5461 cggcgaacgt ttcagtagcc tttttcgcgg cgcgtgtagt ataacttttc ccgcaaacgt
     5521 agtcgaattt gaccgccgcg acgggcagcc ggcctcgaac ttccaacccg aaggcccttc
     5581 gagctttaag agccattttg agcacgagcc tgaacgagag cgggggcgcg cggccgacga
     5641 ttgagcgcgt cgccgtgctc ggcgccggca cgatgggcca cggcatcgcg caggtcgcgg
     5701 cgatgtgcgg ctaccgcgtg acgctgcgcg acatctcgga cgagctggtg tcgaagggga
     5761 tgcgcgccgt cgagtcgaac ctatcgaagg gcgtcgggcg cggcaaggtg acggaagagg
     5821 agagggagcg cgcgctctcg aatttgagcg cgacgacgcg gctcgaagag acggccggcg
     5881 cagacctcta cgtcgaggcc gtccccgagc ggctcgattt gaagcgcgag acgctgcgcg
     5941 cggtcgaggc ccttaacagc acgcccttcg tcttcgccac gaacacctcc tcgctctcaa
     6001 tcaccgagat agccgaaggc tcccgccgcc ccgaacgcgt cgtcggcatg cacttcttca
     6061 accccgtcca catcatgcgc ctcgtcgaga tagtcgtggg ccgcgacacg gcgcgcgaga
     6121 cggtcgaggc ggtgcgcggg gtcgcagtcc gcatgaagaa ggagccgata accgtgcgcg
     6181 acgtgccggg gttcgcgtcg tcgcggctgg gcgtcgcgct cgggctagag gcgatgagga
     6241 tggtcgagga gggcgtggcc ggcgcgaaag atatagatac ggcgatggag ttgggctaca
     6301 atcacccgat ggggccgctg cgactaacag acctggtcgg cctcgacgtt cgcctccaga
     6361 tagccgagta cctttacgcc aagctcggca ccgagcgctt ccgcccgccc gacctactcc
     6421 ggcgcatggt cgccgaaggc aggctcggca agaagaccgg cgaaggattc tacaagtggg
     6481 aaaccgggga acagaaggca gaaggcggca cgcagtaggc agtccgagat gagattgctt
     6541 tacggccccg ttgctttata atcagccgcc ttttgaccgc cttctgcttt ccgccttccg
     6601 ccttctgttt cgatatgagt aggccgacga acgaagagag acgattcgcg ctgaggatgt
     6661 cgctgcgcct gcccatagtg gtctcggggc gggccgagga cggcgcggcg tggagcgagc
     6721 cgaccgagac ggacgacatc tcgaccctgg gcgcgctctt ccacctcaac cagaaggtca
     6781 gccgcggcga ccagctctac ctgcgcgcgc accgccccga cggctcgccg atagaggcca
     6841 cggcccgcgt cgtgcgcacg gccccggcca tctacggcac ggcgcgcgtc ggcgtgcaga
     6901 taatggagcc cacggacaac tggctccgcc tcttcgtctc gtgggtcgcc gacgagcagg
     6961 cttcgtcctc gcccgaaggc gagcagcaac aataacgacg gtggcgagcg tcgggtgacg
     7021 agtgacgagc tcgaaggcag cttcctgctc cgtcactcgt cacttttcac tcgcctcttt
     7081 ttttcgaggt gagaaatggc ttcatacgag actcttctgt tagagcggcg cgggcgcgtc
     7141 gcgctgatta ccatcaaccg cccccagaag ctcaacgccc ttaacataca gacgcgcgcc
     7201 gagggcgctg ccgccctcga cgagcttcgc gacgacgagt cggtgcgcgt cgtcgtcatc
     7261 accggcgcgg gcgagaaggc tttcgtcgcg ggcgcggaca tctccgagtt cgaggggcgc
     7321 acggccgtca cgcagcgcga cgtgatgacg gcccgctcgc tcttcaacgc cgttgacaca
     7381 ttcccgaagc ccgtgatcgc tatgataaac ggcttctgcc tcggcggcgg ctgcgagctg
     7441 gcgctctcgt gcgacctgcg cgtagcgggc gagggcgcgc gcttcggcca gcccgagata
     7501 aatctcggca tcatacccgg cggcggcggg acgcagcgcc tcacgcgact cgtcggggag
     7561 ggcaaggcga tggagcttat cttgacgggc gacatgattg acgcgcagac ggcctacacc
     7621 ctcggcctcg tcaacctcgt cgtcccggcc gcagacctcg aggccaagac gatggagctc
     7681 gccaaccgca tcgccgagaa gagccccgtg gcgctccgca tggcgaagga ggccgtcaaa
     7741 gccgcctcgc gctcgaacct cgacgagggc ctgaggcgcg agattgacct cttcgccata
     7801 tgcttctcga gcgccgacaa ggaggagggc gtcagggcct tcctcgaaaa gcgcaaggca
     7861 gagttcaccg gcaggtaaac cccgggccga ggacgggaga agggtgacgg gaggcggcgt
     7921 gcttcccgtc acccttctac cctttccgtc cccggcttac ctgctgcggc ggcgtggccg
     7981 cgcgggcggc gccgcccaga gcttcacgag cgaatcatag cctccggtcg ccagcgcgtc
     8041 gccgcggcgc gagaacctta tctcggcgat ctcgtcgtcg tggccgccga attcacccag
     8101 gagcctgccc gtgcgcgcgt cgagcagcca cacgtcctta ctcgcgccgc acgcggcgag
     8161 cagcgagccg tccggggagt agtcaacctc gtaaaccata tggggctggc cgagcaccgt
     8221 cctcttcgcg cctgtgcgcg cgccccagag gattatcgtc ttgtcgcgcg aggcgctcgc
     8281 gaccgtcgag ccgtccggcg agaacgcgac ggacgtcacc cagtcggcgt ggccgcggag
     8341 cgtgcgcgcg agccggcccg tgcgcacgtc ccagagcctc acggccttgt cgccggcggc
     8401 gccccccgtc gccagaagcg agccgtccgg cgagaaggcc atgtcggtca cggcgtcccc
     8461 gtggccgcgg agcgtgcgca gcagcgcccc cgtgcgcggg ttccagagct tcacgacgcc
     8521 gtccctgccg cccgtggcga gcacgcgcga gtcgggcgag aacgccacgt catagacgcc
     8581 gtcctcgtgg ccgccgatgc ttcgcaggag cttgtgcgtg tgcgcgtccc acacgcgcac
     8641 gtagagttct tcctgtccgt cggagcagtc ggcgatgagg ccgccgtcgg gcgacgccgc
     8701 gacgcagccc acgcccggcc cttcgctgac gagcgcggcc gtctgctcgc ccgtccgcat
     8761 gtcccacagc ctcacgctcc cgtcctggct gcccgtcacg agcgtgcgcc cgtccggcag
     8821 gaactcgacc gcatagacgg tctcggtgtg cgcgtcaatg gtgaacttca gcccccacgg
     8881 ctccgcgccg cgccgcgccc tttgagcgtg cgccgccgcg gccgcgagca ggcataaaag
     8941 gagggccggc aaagccctca tggccttttg aaacatgacg caaaagtatc accgcgcccc
     9001 cccg
//
LOCUS       DASPKR010000759         5301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1026492, whole genome shotgun sequence.
ACCESSION   DASPKR010000759 DASPKR010000000
VERSION     DASPKR010000759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 5301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5301)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5301
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1026492"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..706)
                     /locus_tag="VD968_19800"
     CDS             complement(<1..706)
                     /locus_tag="VD968_19800"
                     /inference="COORDINATES: protein motif:HMM:NF018129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031411 - gas vesicle [Evidence IEA];
                     GO_process: GO:0031412 - gas vesicle organization
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GvpL/GvpF family gas vesicle protein"
                     /protein_id="HYE16694.1"
                     /translation="MSERKTRTKMREGGGGEAFYVYCVGERVALARAMGEGEAPPDIE
                     GGAGLELVEKGSLAAVASPVPLSAYGEETLRERVSDAEWMAARALRHERVVEHFSRRA
                     GVVPLRFGAIYLRRDSIARALEERAGQLLAAVERLAGREEWGVNVYVGRAALREGVGR
                     VSARLREMEELAAAAQPGQAYLLRKKIDSARDEEARAAVKRVPAEVEAGLGAESDGAV
                     RLRALKGEAGEHGEMVA"
     gene            complement(703..2739)
                     /locus_tag="VD968_19805"
     CDS             complement(703..2739)
                     /locus_tag="VD968_19805"
                     /inference="COORDINATES: protein motif:HMM:NF014433.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsA family ATPase"
                     /protein_id="HYE16695.1"
                     /translation="MTAKKGSRRAGPGLPEDFPAARYIFFGGKGGVGKTTAAASAALT
                     LLDAAADGERILIYSTDPAHSLSDSLGAEVGDRTAEVARRGRAATAPRLFARETDAAR
                     ALEEFKTRHRAVLAEIADRGTMLDEADINDLLGLSLPGMDEVMSLFELSEIERGGEFS
                     RVVVDTAPSGHTSRMLRLPEVFSRWLRALDLMSEKHRYMVSHFARGRPAREDEVDIFL
                     RDLTERSERLRGMLTDPARSGFVLVTIPEAMAVEETLRYSRTLAEAGVSVTDLIINRV
                     ERQRGACPFCRARARMQSPWLKALAREFKDLRVRRAPLFGREVRGAEDLRRFARAVWR
                     GDEEAGGEVKAKSSRTKSTSSGSPSAERFPLEPAPRLLVFGGKGGVGKTTAAAAAALE
                     LARLNPRSRVLLFSTDPAHSLSDSFGEEVGELRRGVGGAANLDAKEIDPAARFEELKE
                     RYRAWADELFESLTGGSRWRVQFDREAMRELVALAPPGIDEIAALSSVSDLLEAGGHA
                     SIVLDTAPTGHLLRFLELPGVALSWARTFIKLLLKYKNVVRWGGVAEELVALSKSIKR
                     VAALLTDAAQTEFVAVAIPERMSLEETDGLARSLGRLRVPLRRLVINNVVPRRAARGC
                     GFCAERRRSQAPVVKEFVRRFSPSVEIYTAPQRPGEVRGAAALRKHFESWRPVR"
     gene            complement(2736..3080)
                     /locus_tag="VD968_19810"
     CDS             complement(2736..3080)
                     /locus_tag="VD968_19810"
                     /inference="COORDINATES: protein motif:HMM:NF016976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein GvpG"
                     /protein_id="HYE16696.1"
                     /translation="MFLIDDILLAPVNGFKFIMRQIQQLAERELNDESVIKEQLLELQ
                     MRLELEEISEEEYAGAEAELFARLRAIKARQLEALGQVHTADTSSLVIEAGGDEEGGA
                     GFYEPGAGREEP"
     gene            complement(3090..3905)
                     /locus_tag="VD968_19815"
     CDS             complement(3090..3905)
                     /locus_tag="VD968_19815"
                     /inference="COORDINATES: protein motif:HMM:NF018129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GvpL/GvpF family gas vesicle protein"
                     /protein_id="HYE16697.1"
                     /translation="MSAETELNAASPAPPPAPEGKYVYCIIETKEPRTFGPIGIGGRG
                     DTVYTVHHDGLAAVVSNTPIQVYDPTRENVFAHEQVNETVMREFTVLPMAFGVLFRTE
                     EDIVELMRGTYDALRDVLAKMEGKVEFGLKVNWDRERVIAELEEESEEIRNLKEQITS
                     RGTGSTYFARMQLGRLIESALSEKSDAYVRQIYDGLRETAVASRANKPIGDKMIMNAA
                     FLIERDSEPEFDAKVKEIASRYEGKLSFKYTGPWPPYNFVHIRLKLERGEGTA"
     gene            4177..4710
                     /locus_tag="VD968_19820"
     CDS             4177..4710
                     /locus_tag="VD968_19820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16698.1"
                     /translation="MTDQRNWLERLGEKIPGYSGYVAKERRRDIDKLHREHTADRLRA
                     TKRPLTEFMRELSSSGRLFEVGPIDRALKKIDQIENRVRFASYGYAGFFDVAKIEETE
                     LDRIYQFDLALVEKVEELERQAQALAGRGSTADGLKQAAADVERAADDLNRAFDDRYR
                     AIENFRPDGSPGQPMFS"
     gene            4713..>5301
                     /locus_tag="VD968_19825"
     CDS             4713..>5301
                     /locus_tag="VD968_19825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HYE16699.1"
                     /translation="MTERCHNCGAGLYAGQQFCRRCGVPVAGRAGGEAPTQLFPQGAP
                     TSAQAGAAAGQPAAGTLPLGGAGTDSVAQARSTGHQQPLQSFQQTAPLAAQPPARGRK
                     RGAGIIALVVLACVGALVSLGIVLAISTREPRERKEPVVVVKKVGGRAAPGAEAMPPV
                     PPDMPERIMEAVVSAGVPLPLDEQGAAVTAGETVIT"
BASE COUNT          798 a         1852 c         1817 g          834 t
ORIGIN      
        1 gcgccaccat ctcgccgtgc tcgcccgcct cgcccttgag cgcgcgcagg cgcaccgcgc
       61 cgtcgctctc ggcgccgagc ccggcctcga cttcggcggg cacgcgcttg acggccgcgc
      121 gcgcctcctc gtcccgcgcc gagtcaatct tcttgcgaag aaggtacgcc tggcccggct
      181 gcgccgcggc ggcaagctct tccatctcgc gcagccgcgc gctcacgcga ccgacgcctt
      241 cgcgcagcgc cgcgcgcccg acatagacgt tgacgcccca ctcctcccgg cccgccaggc
      301 gctcgaccgc cgctaggagt tgtcccgccc tctcttcgag cgcccgcgcg attgagtctc
      361 ggcgcaggta aatcgcgccg aagcgaagcg gcacaacgcc cgctcggcgc gagaagtgct
      421 cgacgacgcg ctcgtgcctg agcgcgcgcg ccgccatcca ctctgcgtcc gagacgcgct
      481 cgcgcagagt ctcctcgccg taggccgaga gcggcacggg gctcgccacc gcggcgagcg
      541 agcccttctc gactaattcg aggcccgcgc cgccctctat gtcgggcggc gcctcgccct
      601 cgcccatcgc gcgcgcgagg gcgacgcgct cgcccacgca atagacgtag aaggcttctc
      661 cgccgccgcc ctcgcgcatc ttcgttctcg tcttacgctc gctcatcgga cggggcgcca
      721 gctttcgaaa tgcttccgca aggcagcggc cccgcggact tcgcctgggc gctgcggcgc
      781 cgtgtagatt tctacgctcg gcgagaagcg gcgcacgaac tctttgacca cgggcgcctg
      841 cgagcgccgc cgctccgcgc agaagccgca gccgcgcgcg gccctcctcg gcaccacgtt
      901 gttgatgacg agccgcctga gcggcaccct caagcgtccg aggctgcgcg cgaggccgtc
      961 tgtctcttcg aggctcatgc gctcggggat tgcgaccgcg acgaactcgg tctgcgcggc
     1021 gtcggtcagg agcgcggcga cgcgcttgat tgatttcgag agcgcgacca gctcttcggc
     1081 cacgccgccc cagcgtacca cgttcttgta cttgagcagc agctttatga acgttcgcgc
     1141 ccacgagagc gcgacgcccg gcagctccag gaagcgcaga aggtggcccg tgggcgccgt
     1201 gtcgagcacg attgaagcgt gcccgccggc ttcgagcagg tcgctgacgg acgagagcgc
     1261 tgctatctcg tctatgcccg gcggggcgag cgcgacaagc tcgcgcatgg cctcgcggtc
     1321 gaattgcacc cgccagcgcg agccgcccgt gagcgactcg aacagctcgt cagcccaagc
     1381 gcggtagcgc tccttcaact cctcgaagcg cgcggccggg tcaatctcct tcgcgtcgag
     1441 gttggcggcg ccgccgacgc cgcgccggag ctcgcccacc tcttcgccga agctgtcgga
     1501 gagagagtgc gccgggtctg tcgagaagag gagcacgcgg ctgcgcgggt tgagccgcgc
     1561 caactctaac gcggcggccg cggccgcagt ggtcttgccc accccgccct tgccgccgaa
     1621 gacgagcagc cgcggcgccg gctcgagcgg aaagcgttcg gcagaaggag agccggacga
     1681 cgtgctcttc gtcctcgacg acttcgcctt aacctcgcct ccggcctctt cgtcgccgcg
     1741 ccagacggcg cgcgcgaagc ggcgcaagtc ttcggcgccg cggacttccc gcccgaagag
     1801 cggcgcgcgg cgcacgcgca aatctttgaa ctcccgcgcg agggctttca gccacggcga
     1861 ctgcatgcgc gcccgcgcgc ggcagaaggg gcatgcgccg cgctgccgct cgacgcggtt
     1921 gatgatgagg tcggtgacag agactcccgc ctcggcgagc gtgcgcgagt agcggagcgt
     1981 ctcctcgacg gccatcgcct cgggaatcgt gacgagcacg aagccggagc gcgcggggtc
     2041 tgtcagcatc ccgcgcaggc gctcggagcg ctcggtgagg tcgcgcagga aaatgtcaac
     2101 ctcgtcctct cgcgcggggc ggccgcgcgc gaagtgcgag accatgtagc ggtgcttctc
     2161 cgacatcagg tcaagcgcgc gcagccaccg cgagaagact tcgggcaggc gaagcatgcg
     2221 ggaggtgtgg cccgacggcg ccgtgtcaac tacgacgcgc gagaactcgc cgccgcgctc
     2281 tatctcgctc agctcgaaga gtgacatgac ctcgtccatg ccgggcaagc tcaggccgag
     2341 caggtcgttt atgtcggcct cgtcgagcat cgtgccgcgg tcggctatct ctgcgagcac
     2401 ggcgcggtgc ctcgtcttga actcttcgag ggcgcgggcg gcgtccgtct cgcgcgcgaa
     2461 caggcgcggc gcagtcgccg cgcgcccgcg gcgcgcgacc tcggccgtgc ggtcgcccac
     2521 ctcggcgccg aggctgtcgg agagagagtg cgcggggtct gttgagtaga tgagtatgcg
     2581 ctcgccgtcg gcggcggcgt cgaggagcgt gagcgcggca gatgcggcgg cagtggtctt
     2641 gcccaccccg cccttgccgc cgaagaagat gtaacgcgcg gcggggaagt cttccgggag
     2701 ccccgggccc gcccggcgcg agcccttctt cgcggtcaag gctcttcccg gccggcgccc
     2761 ggctcgtaga agcctgcgcc gccctcctcg tcgccgcccg cctcgatgac gagcgaggag
     2821 gtgtcggctg tgtgaacctg cccgagcgct tcaagctgcc gcgcctttat cgcgcgcagc
     2881 cgcgcgaaca gctcggcctc cgccccggcg tactcctcct ccgagatttc ctccagctcc
     2941 agccgcatct gcaactctaa aagctgctcc ttgatgacgg actcgtcgtt cagctccctc
     3001 tcggccaact gctgaatctg tcgcatgatg aacttgaagc cgttcacggg cgccagcagt
     3061 atgtcgtcaa tcaggaacat gggcggccgt tacgcggtgc cttcgccgcg ctcgagcttg
     3121 aggcgtatgt ggacgaagtt gtagggcggc caggggccgg tgtacttgaa ggagagcttg
     3181 ccctcgtagc gcgaggctat ctctttgact ttcgcgtcga actcgggctc gctgtcgcgc
     3241 tcgatgagga aggcggcgtt catgatcatc ttgtcgccga tgggcttgtt ggcgcgcgag
     3301 gcgacagccg tttcgcgcag gccgtcgtaa atctggcgca cgtaggcgtc ggacttctcc
     3361 gacagggccg actctatgag gcggccgagc tgcatgcgcg cgaagtaggt cgagcccgtg
     3421 ccgcgagagg ttatctgctc cttgaggttt cgtatctcct cgctctcctc ctccagctcg
     3481 gcgatgacgc gctccctgtc ccagttcacc ttcaggccga actcgacctt gccctccatc
     3541 ttggcgagca cgtcgcgcag cgcgtcgtag gtgccgcgca tcagctcgac gatgtcctcc
     3601 tcggtgcgga agagcacgcc gaaggccatc ggcagcaccg tgaactcgcg catgacggtc
     3661 tcgttgacct gctcgtgcgc gaagacgttc tcgcgcgtcg ggtcatagac ctgtatgggc
     3721 gtgttcgaga cgacagccgc gagcccgtcg tggtggaccg tatagaccgt gtcgccccgg
     3781 ccgccgatgc cgatggggcc gaaggtgcgc ggctccttcg tctcgatgat gcaatagacg
     3841 tacttgccct cgggcgcggg gggcggcgcg ggactggctg cgttcagttc ggtttcggcg
     3901 ctcatgttcc tcccggaaaa tcctagcggg cttgcccccg gaaggcgccg ggggccataa
     3961 atcgggcggg agagtgccgg cgcgacttgc gcgtgcgcgt tgggttgtcg tctcgggggc
     4021 tcgtgccggg ctataataag tcgcagccag attcccgcgc aactactatc agcgcgcccg
     4081 cgtgttagaa ttcggcgggc cgaaacactg agggcggccc gagcgtaaac gtgaaggacg
     4141 gcgccgggcg ttttggcgcc acacttggag aaacttatga ccgaccagcg taactggctt
     4201 gagcgcctcg gcgaaaagat accgggctac agcggctacg tcgcgaagga gcggcggcgc
     4261 gacatagata agctgcaccg cgagcacacg gccgaccgcc tgcgcgcgac caagcggccg
     4321 ctcacggaat tcatgcgcga gctgtcctcc tcgggccgcc tcttcgaggt cggccccata
     4381 gaccgcgcgc tcaagaagat tgaccagata gagaaccgcg tgcgcttcgc ttcttacggc
     4441 tacgccggct tcttcgacgt ggcgaagata gaggagaccg agctggaccg catctaccag
     4501 ttcgacctcg ccctagtcga gaaggtcgag gagctcgagc ggcaggcgca ggctctcgcc
     4561 ggcaggggct cgacggccga cggcctcaag caggcggccg cggacgttga gcgggcggcc
     4621 gacgacctga accgcgcgtt cgacgaccgt taccgcgcca tagagaactt ccggcccgac
     4681 ggctcgccgg gccagccgat gtttagctga aaatgactga gcgttgtcac aactgcggcg
     4741 cggggctgta cgccggccag cagttctgtc gtcggtgcgg cgtacccgtc gcggggcgcg
     4801 cgggcggcga ggcgccgacg cagctcttcc cgcagggcgc gcccacgtcc gcgcaagcag
     4861 gcgccgcggc gggacagccc gcggccggga ctttgcccct cggcggcgcc ggcacggact
     4921 cggtagcgca ggcgcgctcg accggccacc agcagccctt gcagtccttc cagcagacgg
     4981 cgccgctcgc cgcgcagccg cccgcgcgcg ggcgaaagag aggcgcgggc atcatagcgc
     5041 tcgtcgtctt ggcgtgcgtc ggcgcgctcg tgagcttagg gatcgtgctc gcgatcagca
     5101 cgagggagcc tagggaacgc aaagagccag tggtcgtcgt caagaaggtc ggcgggcgcg
     5161 cagcccccgg cgccgaggcg atgccgcccg tcccgcccga catgcccgag cggataatgg
     5221 aggcggtcgt gagcgccggc gtcccgctcc ccttagacga gcagggcgcg gccgtcacgg
     5281 cgggcgagac ggtgataacg a
//
LOCUS       DASPKR010000760        14812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1549819, whole genome shotgun sequence.
ACCESSION   DASPKR010000760 DASPKR010000000
VERSION     DASPKR010000760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 14812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14812)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14812
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1549819"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            159..1607
                     /locus_tag="VD968_19830"
     CDS             159..1607
                     /locus_tag="VD968_19830"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_function: GO:0070968 - pyrroloquinoline quinone binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HYE16700.1"
                     /translation="MVVRLASCYSLGQVWLTGERVPLDVSQTRRLPRKERMKGYADVE
                     IINYDYPFEQFAEFGEASIAHEGGMRSMFSRLAATAALIFTPAAPACAQDTRTTAQPP
                     PPEVVASSAGSIRIERLATLEQPWGMALLPDGRLLVTEKPGRLRIWAEGKLSEPVQGV
                     PAAFYRGPSDQGGMLDVEVDPDFARNQLVYLSYVEAADPQPADARNEAEPRFGGGGPS
                     QDIVVRGGAVARGRLEGNQLRDVQVIWRQVPKTVGRGHFGNRLLFAPDGKLFITSGER
                     MRFDPAQDLASNLGKVVRLNPDGSAPADNPFAGREGARSDVWSYGHRNILAAALDPSS
                     GRLWVFEMGPLGGDEVNLVERGKNYGWPLVSNGDNYDNSMIPDHPSRRDLQGPVRTWT
                     PVVSPSGALFYTGSLFAGWRGSALVGGLSSRAIVRLVFDGERVALEERIDMKRRIRDL
                     LQTPDGALLVIVDDRQGDLLRLTPAPATAAAR"
     gene            complement(1652..2821)
                     /locus_tag="VD968_19835"
     CDS             complement(1652..2821)
                     /locus_tag="VD968_19835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16701.1"
                     /translation="MSYSDWVRVYELWQAGESAYGDGLHNLAADYYRQATALAESSDD
                     VPAWYRGVMRRALADELTSLERLREALAVLSWMPKTTEGGFRSCCIYGSMTDHIEIAQ
                     RLPVSLAAIERAYRQAEDYYRSAGEADWRGRLLYYRSELLFERGLYSEALSAAQEGAA
                     HLRDDCPKLYPSTHMYGLFRISLALGDLDGAKRYLNRWVEKYDKEDKHHPVRGAYEHV
                     MRSRLARAEGRAGDAVEWARAGAHMIPAPDWGDARFALVCEQARAFILAGQHALAGEM
                     VARLAHARRSESAHRRHAFALLSGDYYLGRARAASGLAQLDDEFGMRGAAHEEVEPAR
                     PAGFEAARARRAYAAALKVGAWIDEKLECSIRTDEVNRRLARLSHVARVASAAGR"
     gene            complement(2834..4753)
                     /locus_tag="VD968_19840"
     CDS             complement(2834..4753)
                     /locus_tag="VD968_19840"
                     /inference="COORDINATES: protein motif:HMM:NF012410.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE16702.1"
                     /translation="MMTAPERFKMETNFDGLIKLLAEHLYSEPDVFVRELVQNANDSI
                     VRRRDAEPDLAGRVEIEADPASRTLRFRDNGLGMDRADIRQFLSVIGSSGTGSTRRDL
                     EGRGGAALELIGQFGIGMLSAFVVAERVVVRTRKLGESQGFAWHNSGSTDCELYADAK
                     QDVGTEIVVSVAPDYAFLLEESRLREAVIKYCEFIQFPISVNGRGPVNAMEAPWHRSS
                     WPSDEAKAAAYEDFLNRRYPDIILDVIPVEIEGEHTARGALFISDRHLPDINTAGVVD
                     IYVRRMLIRANDDTLLPPWAKFVRGVVDTPDLCPTAARDQVQRTHPSFAHLQKRLGDQ
                     IVERLGYLAEFDPGKFARINLWHHYHLKGMAFYHDEFFERVGELLLFETNRGMMSLRQ
                     YVAEAAAFSEPGRETPVYYFAYRGAATQFYRLAAARGWAVINAGYSFEEELLKKYAAR
                     HAGRVRLERLDATDDPELFARLAEGEQERFRQLELDMEGHLRRSGSGNVRVQVRRFQP
                     SELPAVIIETPESEAERKLQNRLTVLSMTDAFDDIAREALEQGRRRPQMLSLNADNPL
                     VLRLAAEDRRNGLVREVMLGVYHSALLYSHNLLTQSSAEAIHDHLVCLCSMALEDPDS
                     LLLHRPEDEELDLVG"
     gene            complement(4889..6154)
                     /locus_tag="VD968_19845"
     CDS             complement(4889..6154)
                     /locus_tag="VD968_19845"
                     /inference="COORDINATES: protein motif:HMM:NF012321.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYE16703.1"
                     /translation="MSAAQPKVEVFTERAKLAAGREQTVDVLVRVRPPEVESGGAARR
                     RLNLGVVLDRSGSMGGEKMLRAIEAASYCVDQLLPSDRLSVVIFDEFIEVLIPSRPVE
                     DKPGLKRLLSRVAARGSTALHEAWVCGGMQVSEHLDSGAINRVLLITDGLANVGLTNN
                     DEIVSQAKGLFERGVSTSTVGIGADFNEGLLMPMASAGGGNAWHVAEAHDMQRIFAVE
                     LEGLLAQFAHNVSLGLVPSDGVSVADLLNDFELTETGRYQLPDLQAGSPLDVVLRLHL
                     PAQEAGKRMRLLDLRLGYTPHEARGAEVLKHAFEVEFAPPEEVERLSANPEVAKAVLL
                     LMNARAKREAVAWMDRGDYAAASSVIGSAREATAALCAAMPADKDALSESEELYRLTD
                     SLEDRRQDKMSRKIMEYSSYLRRMSRKSR"
     gene            complement(6158..6820)
                     /locus_tag="VD968_19850"
     CDS             complement(6158..6820)
                     /locus_tag="VD968_19850"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HYE16704.1"
                     /translation="MRKWLEAARRGRYVGVAELAQEAARILAESGVAQQARGTVTELP
                     DERTVRYYLAEGLIPPAEEKQGTASVFGYRHLLQLLVVKKLQAEHLPIRAIRELVASK
                     TERQLERLLGAEQEEGAGSTGKGEALSYLESLLQNSPSPPAASPRPPSSPPRASALMS
                     SPSASPRETWARVELEPGLEVHVSDSYQGPQSEGALRRLAQSFLNVLRARGAQSPKRG
                     RK"
     gene            complement(6975..7361)
                     /locus_tag="VD968_19855"
     CDS             complement(6975..7361)
                     /locus_tag="VD968_19855"
                     /inference="COORDINATES: protein motif:HMM:TIGR02246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HYE16705.1"
                     /translation="MENIHDAIASAVRTFAAAVSDNDAAPIAALYGNDATLLPPGNPM
                     MKGRDAIHAFWQGALGMGVKEAKLETLEVESSGDLAYEVGRFRMVVQPQGGERAEMTG
                     KYLVVWKQEGEGWRMHVDIWNGDGPA"
     gene            complement(7512..8789)
                     /locus_tag="VD968_19860"
     CDS             complement(7512..8789)
                     /locus_tag="VD968_19860"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HYE16706.1"
                     /translation="MKARLLTIIAASCLCFIAAADAAAPAADWPQWRGPDRSGTSKER
                     GLLRQWPAGGPRLLWQVNDIGDGYSTPAVAGSRIYLMSNRGMDNEFVQALSTKDGKPI
                     WTTRVGNVGNPNQNPPYPKARSTPTVDGELIYALGSDGDLACLEAKGGKIRWQKNLRT
                     EFGGQPGEWAYAESPLVDGDLVVVTPGGARATMAALNKKTGAVVWKSAIPGGEPAGYA
                     SAIAVEGGGRRQYVQLLSKGLVGVDAKTGQFLWRYAEAAKGPAQYFTPVGGGEHVYCG
                     ALGVGGVLVRLKPDGVEQVYFTRGLPNGIGGAVRVGDYLYGADMPGQRLLAIEFATGQ
                     VKWQTENFGWSSVASADGLLFLHGIDGSVGLAEATPEGYRERGRFTPPNQPKKKQVGP
                     YPEGAFAYPVIADGRLYIRDLGTLWAYDIKAGR"
     gene            complement(8834..11527)
                     /locus_tag="VD968_19865"
     CDS             complement(8834..11527)
                     /locus_tag="VD968_19865"
                     /inference="COORDINATES: protein motif:HMM:TIGR03434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYE16707.1"
                     /translation="MNWWHRLLRRRKCEEELEKELRFHLEQHTDDLIAQGHSPEEARR
                     RARLALGGPEQVKEMCRDARGTRWANDLLRDLRYGVRVLAKQPGFTAVAALTLALGIG
                     VNTAILSAVNGFVLRPLPVEKPEELIAPYWGRKTDAQVWGRFSYPNYLDLREQNKSFA
                     DLCAWSEASAGISSGESVKAGEGGRAEVIWGELVSANYFDVMGVKPALGRGFLPEEDS
                     TPGTHPVAVISHSLWQRRFDGDGGVVGKTVYLNGHPFTVVGVMPESFLGGAFYLRKAF
                     WAPLMMSQKFARRPEWKTDRGYALFQLYGRLKPGVTLQQAEADLNSVADALGGLYPQE
                     NAGTRVRLTTELLGRYAAVTVPIRYGGFLALCVSGLVLLLACANVANLMLARAATRTR
                     EIGIRLAVGASRGRIVRQLLTESVLLALLGCALGLAFAYWSADLIMVSFPPVPYPISL
                     KFAPDGYVLKWMLAVSVLTGVTFGLAPALLASRTDLVAVIKGVTARPSHGRRRLNLRG
                     ALVVAQVTISLVVLICAGLFIRSLSQVRQIHPGFETDNLVTMMINPSLLAYDERETVR
                     RFFPELLRRVEAQPGVRSAAMVNEMPLAVGHVTRGPVVKEGEIDPPPNKGEHPDCNFV
                     TPKYFETLRTPLVAGRDFTDRDNADAPPVVIVNQEFARRFYGGEQAALGKRFRLGQGA
                     ALMEIVGVAKDGRYRSLYEDRLPFVFLPVYQHPRNGVTLMVSAQSAGDLQAVVESARR
                     EIAQMDSRLPVVGVMMAEENLSLAYWGPNVAAGMASTFGALALVLATMGLYSVMTYSV
                     SQRTHEIGIRMALGAGLRDVTRLVVGQGMRMALVGIALGLTCALALTRLLGGLLLGIG
                     TTDSVTFVGVPVLLTAVALLACYVPARRAARVDPLAALRQD"
     gene            complement(11527..11871)
                     /locus_tag="VD968_19870"
     CDS             complement(11527..11871)
                     /locus_tag="VD968_19870"
                     /inference="COORDINATES: protein motif:HMM:TIGR03433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HYE16708.1"
                     /translation="MPATKSDLPQGTLDLLILKIVALGPVHGYAIAQRLEQASRGVVQ
                     VPQGSLYPALHRLENRGLLDADWKATETGREAKFYRLTRKGRAQLETETAGWLRLAEA
                     VGLILKLSEGGA"
     gene            complement(12147..12650)
                     /locus_tag="VD968_19875"
     CDS             complement(12147..12650)
                     /locus_tag="VD968_19875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16709.1"
                     /translation="MLKIYLLTLFASLSLQPPIIYQTAEPRTVLDYYRLLPDKYFEAD
                     EEQRVNWMLDPKRGAVVDVKNGYIYAPGDGAQNTLYVCLFRKADSSYVIAVKADVEGS
                     TQLDFYEYRGGSFVDVTKSVLPVAVDENLEYEMPRYGTTIKVKDRTGKSLYNLAWGRG
                     RFSKTKA"
     gene            13373..>14812
                     /locus_tag="VD968_19880"
     CDS             13373..>14812
                     /locus_tag="VD968_19880"
                     /inference="COORDINATES: protein motif:HMM:NF037016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HYE16710.1"
                     /translation="MNSKSLTSARRRYWIALFLSYAMLSMQLMPAAAAAARTAAPRAV
                     VSTAAESGDAGHAPVTTPVAAAPAPVALAAPPSSNITATMTDAVVPGSGNDLDGDGRA
                     DPGDKIQYTVTITNNGPDDATNVEFSDTVDANTTLVPGSITTQPLASPDSYDVIGNVR
                     IQPDAAAGLLTNDCDPATDGGPCTNAGLTASGPTSSTQGGNVTVNSNGSFSYNPPAGF
                     SGTDTFTYTVTDSSGKTDTAQVTLNVGGAVIWFVKAGAPGGGDGRLTSPFNCLVGTGC
                     FDPVAADEAGDFIFLFAGSYNGGLTLLDNEKLIGEGSTDSLATLASVTPATYSDSLPT
                     TGGTPPVITTTSLSTNGVNVGSGNTLRGFTVGDTTAIDIASGASFGTLTVSEVTLGGA
                     GQALGLLNGTLSASFLSIGSTSGSHGLFLNQVAGSLTSGSTTVSGPSQGIVITNSTGN
                     FSFGNTSVSAATAGISVTSSSGTKTFGTLA"
BASE COUNT         2376 a         5167 c         4812 g         2457 t
ORIGIN      
        1 ccgccacgac ggcagcgacg ccgaggccct gctcagtagg gccaacgagg cgcagcggcg
       61 cgccgacgtg gtgcgccagg tggtgattac ccacgagcac ctcggcaagg aaaagctagc
      121 acggctcgat tgacccgaag tacgcgcaca acgttggcat ggtcgtgcgc ctcgcctcct
      181 gctacagcct cggccaggtg tggctcaccg gcgagcgcgt cccgctcgac gtctcgcaaa
      241 cgcgccgcct gccgcgcaag gagcgcatga agggctacgc cgacgtcgag ataatcaact
      301 acgactaccc gttcgagcag ttcgccgagt ttggtgaagc gtcaatcgcg cacgagggag
      361 ggatgcgttc gatgttcagc agactggcgg cgacggccgc cctcatattc acgcccgccg
      421 cgccggcctg cgcgcaggat actcgcacga ccgcgcagcc gccgccgccc gaagtggttg
      481 cgtcctcggc cggcagcatt cgtatagagc gcctcgccac tctcgaacag ccgtggggga
      541 tggcgctgct gccggacggg cgcctgctcg tcaccgagaa gccggggcgg ctgcgcatat
      601 gggccgaggg aaaactctcc gagcccgtgc agggcgtgcc ggctgcgttc taccgcggcc
      661 cgtccgacca aggcggcatg ctcgacgttg aggttgatcc cgacttcgcg cgcaaccagc
      721 tcgtctatct ctcctacgtc gaggccgccg acccgcagcc cgccgacgcg cgcaacgagg
      781 cggagccgcg gttcggcggg ggcggcccct cgcaggacat cgtcgtcagg ggcggggcag
      841 tcgcgcgcgg gcgtctggaa gggaaccagc tccgcgacgt gcaggtcatc tggcggcagg
      901 tgccgaagac ggtcgggcgc ggccacttcg gcaaccgcct cctgttcgcg cccgacggca
      961 agctcttcat cacctccggc gagaggatgc gcttcgaccc ggcgcaagac ctcgcctcta
     1021 acctcggcaa ggtcgtgcgc ctgaaccctg acggctcggc cccggccgac aacccgttcg
     1081 cagggcgtga gggcgcgcgc agcgacgtct ggagctacgg ccaccgcaac atactcgcgg
     1141 ccgctctcga cccctcgtcg ggccgcctgt gggtcttcga gatggggccg ctcggcggcg
     1201 acgaggtgaa cttagtcgag cgcggcaaga actacggctg gcctttggtg agcaacggcg
     1261 acaactacga caactcgatg atccccgacc acccctctcg ccgggacctt cagggaccgg
     1321 tgcggacgtg gacgcccgtc gtctcgccat cgggcgcgct cttctacacc ggctcgctct
     1381 tcgccggctg gcgcgggagc gcgctcgtcg gaggcctgtc gtcgcgcgcc atcgtgcgcc
     1441 tcgtcttcga cggcgagcgc gtcgccctcg aagagcggat agacatgaag aggcgcatac
     1501 gcgacctgct acagacgccc gacggcgcgc tcctcgtcat cgttgacgac aggcagggcg
     1561 acctcctgcg ccttacgccc gcgccggcca ccgccgccgc gcgctgacgg cgaagagcga
     1621 gcttaagaga tggccttgtg cgcgtgacag ctcaccggcc tgccgcgctc gcgacgcgcg
     1681 cgacgtgcga gagccgggcg agcctgcggt tgacctcatc cgtccttatt gagcattcga
     1741 gcttttcgtc tatccacgcg ccgaccttga gggccgctgc gtaggcgcgg cgcgcccgcg
     1801 cggcctcgaa gccggcgggc cgcgcgggct cgacctcttc gtgggcggcg ccgcgcatgc
     1861 cgaactcgtc gtcgagctgc gcgagccccg atgcggcgcg cgcgcgcccg aggtagtagt
     1921 ctccgctcag gagcgcgaag gcgtggcgtc ggtgcgcgct ctccgagcgg cgcgcgtgag
     1981 cgagccgggc gaccatctcg cctgcgagcg cgtgctggcc ggcgaggatg aaggcgcggg
     2041 cctgctcgca cacgagcgcg aagcgcgcgt cgccccagtc gggcgccggt atcatgtgcg
     2101 cgcccgcgcg agcccactcg acggcgtcgc ccgccctccc ctcggccctc gccagccgcg
     2161 agcgcatcac gtgctcatac gcgccgcgaa cggggtggtg cttgtcctcc ttgtcgtact
     2221 tctcgaccca cctgtttaag tacctcttcg cgccgtcgag gtcgccgagc gcgaggctta
     2281 tgcggaagag cccgtacatg tgcgtcgaag ggtagagctt cgggcagtcg tcgcgcaggt
     2341 gcgcggcgcc ctcctgagcc gccgagagcg cctccgagta gaggccgcgc tcgaagagaa
     2401 gctccgaacg gtagtagagc aggcggccgc gccagtccgc ctcgcccgcc gagcggtagt
     2461 agtcctcggc ctgcctgtag gccctctcga tggcggcgag gctgacgggc aggcgctgcg
     2521 ctatctctat gtggtcggtc atgctgccgt agatgcagca ggagcggaag ccgccctcgg
     2581 tcgtcttcgg catccaggag agcacggcca gcgcctcgcg caggcgttcg agcgaggtca
     2641 gctcgtccgc cagcgcgcgg cgcatgacgc ccctgtacca tgccggcacg tcgtccgacg
     2701 actcggccag cgccgtcgcc tgccggtagt agtcggcggc gaggttgtgc aggccgtcgc
     2761 cgtaggccga ctcgccggcc tgccacagct cgtaaactct cacccaatcc gagtacgaca
     2821 tctgacttct ccgttagccg accaggtcga gctcctcgtc ctcggggcgg tggagcagga
     2881 gcgagtcggg gtcttcgagc gccatcgagc agaggcagac gaggtggtcg tgtatggcct
     2941 cggcgctcga ctgcgtgagc aggttgtgcg agtagagcag ggcgctgtga tagacgccga
     3001 gcatcacctc gcgcaccagc ccgttgcgcc tgtcctcggc cgcgagccgc aagacgagcg
     3061 ggttgtccgc gttgagcgag agcatctgcg ggcgtcggcg gccctgctcc agggcctctc
     3121 gcgcgatgtc gtcgaaggcg tccgtcatcg agagcacggt aaggcggttc tgtagcttgc
     3181 gctccgcttc agactcgggc gtctcgatga tgacggccgg gagctccgaa ggctggaacc
     3241 ggcgaacctg cacgcgcacg ttccccgagc ccgagcggcg caggtggcct tccatgtcaa
     3301 gctccaactg gcggaaccgc tcctgctcgc cctccgcgag gcgcgcgaac agctccgggt
     3361 cgtcggtcgc gtccaggcgc tcgagccgca cgcggccagc gtggcgggcg gcgtacttct
     3421 tgagcagctc ctcctcgaaa gagtagccgg cgttgatgac ggcccagccg cgcgccgccg
     3481 cgagccggta gaactgcgtg gccgcgccgc ggtaggcgaa gtaatagacg ggcgtctcgc
     3541 ggcccggctc agagaaggca gccgcctccg cgacgtactg cctgagcgac atcatcccgc
     3601 ggttggtctc gaagaggagc agctcgccca cgcgctcgaa gaactcgtcg tggtagaagg
     3661 ccatcccctt gaggtggtag tggtgccaga ggtttatgcg cgcgaacttg ccggggtcga
     3721 actccgcaag gtagcccaaa cgctcgacta tctggtcgcc cagacgcttc tgcaagtgtg
     3781 cgaacgacgg gtgcgtgcgc tgtacctggt cgcgggcggc ggtcgggcag aggtcgggcg
     3841 tgtcaaccac cccgcgcacg aacttcgccc acggcggcag gagcgtgtcg tcgttggcgc
     3901 gtatgagcat gcggcgaacg tatatgtcca cgacgcccgc cgtgttgatg tcgggcaggt
     3961 ggcggtcgga gatgaagagc gcgccgcgcg ccgtgtgctc gccttcgatc tcgacgggta
     4021 tcacgtcgag gatgatgtcc gggtagcgcc ggttgaggaa gtcctcgtag gccgcggcct
     4081 tcgcctcgtc cgaaggccat gacgagcggt gccacggcgc ctccatcgcg ttgacggggc
     4141 cgcgcccgtt gacgctgatg gggaactgta tgaactcgca gtatttgatt acggcctcgc
     4201 gcagccgcga ctcttccagg aggaaggcgt agtcgggcgc gaccgagacg actatctcgg
     4261 tgccgacgtc ctgcttggcg tcagcgtaca gctcgcaatc ggtcgagcca gagttgtgcc
     4321 acgcgaagcc ctgcgactcg ccgagcttgc gcgtgcgcac gacgacgcgc tcggcgacga
     4381 cgaaggccga gagcatgcct atgccgaact ggccgatgag ctcgagcgcg gcgccgccgc
     4441 ggccttcgag gtcgcggcgc gtggagcccg tccccgaaga gcctatgacg gagaggaact
     4501 gccgtatgtc agcgcgatcc atcccaagcc cgttgtctcg gaaacgaagg gtgcgcgacg
     4561 cggggtcggc ctctatctcg acgcggccgg cgaggtcggg ctcggcgtcg cggcgccgca
     4621 cgatgctgtc gtttgcgttc tgcacaagct cgcggacgaa cacgtccggc tcgctgtaga
     4681 ggtgctcggc cagaagcttg atgagaccgt cgaagttggt ctccatcttg aatctttcgg
     4741 gcgccgtcat catggctttc aaacctttcg ggcgaggggc gggcgagccc gtgcctcggg
     4801 gtcgggcttc cgccggtcgc ttagattatc tcgggagagg gaggagcggg ggccgcgagc
     4861 ccggcccccg gcgttgaagg gttcgggctt agcggctctt cctgctcatg cggcgcaggt
     4921 aggacgagta ctccataatc ttgcgactca tcttgtcctg ccgccggtct tcgagcgagt
     4981 cggtgaggcg gtacagctct tccgactcgc tcagcgcgtc cttgtcggcg ggcatggcgg
     5041 cgcagagtgc cgccgtcgcc tcccgtgcgc tgccgatcac gctggaggcc gcggcgtagt
     5101 ccccgcgatc catccacgcc accgcctcgc gcttggcacg cgcgttcata agcagtagca
     5161 cggccttagc gacctcgggg ttcgcgctca gccgctctac ctcttcgggc ggggcgaact
     5221 cgacctcgaa ggcgtgcttt aagacttccg ccccgcgcgc ctcatgcggc gtgtagccga
     5281 ggcgaaggtc gagcaggcgc atgcgctttc cggcctcctg cgcggggagg tggagccgca
     5341 gcacgacgtc taagggcgag cctgcctgca agtccgggag ctggtagcgg cccgtctcgg
     5401 tcaactcgaa gtcgttgagg aggtctgcga cgctcacgcc gtccgacggc acgagcccca
     5461 gcgagacgtt gtgagcgaac tgcgcgagca agccttccag ctcgacggcg aagatgcgct
     5521 gcatgtcgtg cgcctcggcg acgtgccagg cgttgccgcc cccggcgctc gccatcggca
     5581 tcaaaagccc ttcgttgaag tcggcgccaa tgcctacggt cgaggtgctg acgccgcgct
     5641 cgaacaggcc cttcgcctgc gagactatct cgtcgttgtt cgtaaggccc acgttagcga
     5701 gcccgtccgt gatgagcagc acgcggttaa ttgcgcccga gtcgaggtgc tcgctcacct
     5761 gcatcccgcc gcacacccac gcctcgtgca gcgccgtcga gccgcgcgcg gcaacgcgcg
     5821 agagcaggcg cttgaggccc ggcttgtcct ctaccggccg gctcggtatg agcacctcga
     5881 taaattcgtc gaagatgacg acgctcaggc ggtcggacgg gagcaactgg tcaacgcagt
     5941 agctagccgc ctctatcgcg cgcaacatct tctccccgcc cattgagccc gagcggtcta
     6001 gcacgacccc caggttcagg cgccggcgcg ccgcgccgcc cgactcgact tcaggcggcc
     6061 gcacgcgcac gagcacgtca acggtctgct cccgccccgc ggctagcttc gcgcgctccg
     6121 tgaaaacttc taccttcggc tgagctgctg acatctttta cttcctcccg cgcttaggcg
     6181 actgcgcgcc gcgcgccctt aaaacgttca agaaagactg cgccagccgc ctgagcgccc
     6241 cctcactctg cggcccctgg tagctgtcgc tcacgtggac ttctaggccc ggctccaact
     6301 cgaccctcgc ccatgtctcg cggggcgagg ccgagggcga agacattagc gccgacgcgc
     6361 gcggcggcga ggacggtggt ctcggcgacg cggccggggg agaagggcta ttctgcaaaa
     6421 gcgattcgag gtagctgagc gcctcgccct tgcccgtgga gccagcccct tcctcctgct
     6481 ccgcgcccag aagcctttcg agctgtcgct cggtcttgct cgcgaccagc tcccttatgg
     6541 cgcgtatcgg caggtgctcg gcctgcaact tcttgacgac caggagctgt agaaggtggc
     6601 ggtagccgaa gacagacgcc gtcccctgct tctcctctgc cggcgggatg agcccttcgg
     6661 caaggtagta cctcaccgtg cgctcgtccg gcagctccgt cacggtgccg cgcgcctgct
     6721 gcgccacgcc gctctcggcc agaattctcg ccgcctcttg ggccaactcg gccacgccga
     6781 cgtacctgcc gcggcgcgcc gcctccagcc acttcctcat gccggcggat tatatagaag
     6841 gcagaatttg gtgtcaacag taaatactgt caagaaactc gaaggcgccg ctcgcccgca
     6901 aaaaagagga gggccggcgc gaaaatttac gcgccggccc ttcacgaatc aaacgggcga
     6961 gacttttgtt ttacttacgc cggcccgtcg ccgttccaaa tgtccacgtg catccgccag
     7021 ccctcgccct cctgcttcca cacgaccagg tacttgccgg tcatctcggc gcgctccccg
     7081 ccctgcggct gcacgaccat cctgaacctc ccgacctcgt aggccagatc gccgctcgac
     7141 tcgacctcca gcgtctcgag cttcgcctcc ttgacgccca tcccgagggc gccctgccag
     7201 aaggcgtgga tggcgtctct gcccttcatc atggggttgc cgggcgggag cagcgtggcg
     7261 tcgttaccgt acagggcggc gatgggggcg gcgtcgttgt cgctgacggc ggcggcgaaa
     7321 gtccggacgg cggacgcgat ggcgtcgtga atgttctcca tgactgtctt ctcctctgtc
     7381 gtgtgttccg taaaactgga cgagctgtca atactgattc gggccggcac attcataacg
     7441 caaggcggcc ggcgggtcaa cgccggccgc cttgcgccgc gggtgtgacg agcaggtgaa
     7501 gcgtctagtg actatcggcc cgccttgatg tcgtatgccc agagggtgcc gaggtcgcgt
     7561 atgtagagcc tcccgtctgc gatgacgggg taggcgaacg cgccctccgg gtacggcccg
     7621 acctgtttct tcttcggctg attcggcggg gtgaaccggc ccctctcgcg gtagccttcg
     7681 ggcgtcgcct ccgccagccc gacgctcccg tctataccgt ggaggaacag aagcccgtcg
     7741 gccgaggcta cagacgacca gccgaaattc tcggtctgcc acttcacctg tccggtggcg
     7801 aactcgattg cgagcagccg ctgccccggc atgtcagcgc cgtaaaggta gtcaccgacg
     7861 cgcaccgcgc cgccgatgcc gttcggcaac ccgcgcgtga aataaacctg ctccacgccg
     7921 tcaggcttca ggcgcactag cacgcccccg acgccgagcg ccccgcaata gacgtgctcg
     7981 ccgccgccga ccggcgtgaa atactgcgcg gggcctttgg cggcctcggc gtagcgccag
     8041 aggaactggc cggtcttggc gtcaaccccg accagcccct tgctcaagag ctgcacgtac
     8101 tgcctgcggc ccccgccctc gacggcaatc gcggaggcgt agcccgcggg ctcgccgccc
     8161 ggtatcgccg acttccagac gaccgcgccc gtctttttgt tgagcgcagc cattgtggcc
     8221 cgcgcgccgc ccggcgtcac aacgacgagg tcgccgtcaa cgagcggcga ctcggcgtag
     8281 gcccactcgc cgggctggcc gccgaactcc gtgcggaggt tcttctgcca gcgaatcttc
     8341 ccgcctttgg cttcgaggca ggcgaggtcg ccgtccgagc ccagcgcgta gataagctct
     8401 ccgtcaacgg tcggggtcga gcgcgccttc gggtatggcg ggttctggtt cgggttgccg
     8461 acgttgccca ctcgggtcgt ccatatgggc ttgccgtctt tggtcgagag ggcctggacg
     8521 aactcgttat ccatgccgcg gttgctcatg aggtagatgc gcgagccggc gaccgcgggg
     8581 gtcgaatagc cgtcgcctat gtcgttcacc tgccagagca gccgggggcc gcccgcgggc
     8641 cactgcctga gcaggccgcg ctccttcgac gtgccgctgc gatccgggcc tcgccactgg
     8701 ggccagtcgg cggccggcgc ggccgcgtcg gcggcggcta tgaagcacaa acaggaagct
     8761 gcgatgatgg ttagcagtcg tgccttcatt atcttctcct tccgaacgag gggccgtccc
     8821 aactctctca ggctcagtct tggcgcaggg ccgccagcgg gtcaacgcgt gccgcgcgac
     8881 gcgccgggac gtaacaggcc agcagggcga cggcggtcag taacaccggc acgccgacga
     8941 aagttacgga gtcggtcgtg cctatcccca gcaacaaacc ccccagcagg cgcgtcaacg
     9001 cgagcgcgca cgtcagcccc agcgctatgc ccaccagcgc catacgcatc ccctggccga
     9061 cgaccagccg ggtaacgtcg cgcaggcccg cgccgagcgc catgcgtatg cctatctcgt
     9121 gcgtgcgctg gctgacggag taggtcatca cgctgtagag ccccatcgtc gcaagcacca
     9181 gagccagcgc cccgaacgtc gaggccatcc ccgccgccac gttcggcccc cagtaggcaa
     9241 gcgacaggtt ctcttccgcc atcatcacgc cgaccacggg cagccgcgag tccatctgcg
     9301 ctatctcgcg ccgcgcgctc tcaacgaccg cctgcaaatc gccggccgac tgcgcgctga
     9361 ccatcagcgt caccccgttg cgcgggtgtt gatagacggg gaggaacacg aacggcagcc
     9421 ggtcttcgta gagcgagcgg tagcgcccgt ccttcgcgac gccgacaatc tccatcagcg
     9481 ccgccccctg ccccaggcgg aagcgcttcc ccagcgccgc ctgctcgccg ccgtaaaacc
     9541 tgcgcgcgaa ctcctggttg actatcacga cgggcggggc gtctgcgttg tcgcggtctg
     9601 tgaaatcgcg ccctgcgacg agaggcgtgc ggagggtctc gaaatactta ggcgtgacga
     9661 aattgcagtc ggggtgctcg cccttgttcg gcggagggtc tatctcgccc tctttgacga
     9721 cggggccgcg cgtgacgtgg ccgacggcga gcggcatctc gttgaccatc gcggcggagc
     9781 gcacgccggg ctgcgcctcg acgcggcgca gcaactccgg gaagaaccgc ctgacggtct
     9841 cgcgctcgtc gtaggccagc aggctggggt taatcatcat cgtgaccagg ttgtcggtct
     9901 cgaagccggg gtggatctgc cgcacctggc tgaggcttct gatgaacagc cccgcgcata
     9961 tcagcacgac gagggaaatc gtgacctgag cgaccacgag cgcgccccgc aggttcaggc
    10021 ggcggcggcc gtgcgacggc ctcgccgtca cgcctttgat gacggccacc aggtcagtcc
    10081 gcgaggccag aagggccggg gccagcccga aggtcacgcc ggtcaaaacg gaaacggcca
    10141 gcatccattt aaggacgtag ccgtccggcg cgaacttcaa acttatgggg taggggaccg
    10201 gcgggaagct caccataatc aagtccgcgc tccagtacgc gaacgcgagc ccgagcgcgc
    10261 agcccagcag cgcgagcagc acgctctccg tcagcagttg gcgcacgatg cggccgcggc
    10321 tcgcgccgac ggcgagccga atccctatct ccctcgtgcg cgtggccgcg cgcgcgagca
    10381 tgaggttcgc gacgttggcg catgccagca gcagcacaag tccggagacg cacagggcca
    10441 ggaagccgcc gtaccttatc ggcacggtca ctgcggcgta gcgccccagc agctcagtcg
    10501 ttagccgaac ccgcgtgccg gcgttctcct gcgggtaaag cccgccgagg gcgtcggcca
    10561 ccgaattcaa atccgcctcc gcctgctgga gcgtcacgcc cggcttcagg cgaccgtaca
    10621 actggaacag tgcgtagccg cgatccgtct tccactcggg gcgccgcgcg aatttctgcg
    10681 acatcatcag gggcgcccag aacgccttgc gcaggtaaaa cgccccgccg aggaaagact
    10741 ccggcatgac gcctacgacg gtgaacgggt ggccgttcag atagaccgtc ttcccgacga
    10801 cgccaccgtc accgtcgaag cgccgctgcc acaacgaatg gctgatgacc gctaccgggt
    10861 gcgtccccgg cgtgctgtct tcttccggca ggaagccccg ccccagcgcg ggcttcacgc
    10921 ccatcacgtc gaagtagttg gcgctgacaa gctcgcccca gatgacttcg gcgcgaccgc
    10981 cctcgcccgc tttgacgctc tcgccggagc ttatgccagc cgaagcctcc gaccacgcgc
    11041 agaggtctgc gaagctcttg ttctgctcgc gcaagtcaag gtagttcggg taggaaaacc
    11101 tcccccagac ctgcgcgtca gtcttcctac cccagtaagg ggcgatcaac tcctccggct
    11161 tttccacggg taggggccgc aggacgaagc cgttcacggc gctcaggatg gccgtgttga
    11221 cgccgatgcc gagcgccagc gtcagcgcgg cgaccgccgt aaaccccggc tgcttcgcca
    11281 acacgcgcac gccgtagcgc aaatcgcgca gcaggtcgtt cgcccaacgc gtcccgcgcg
    11341 cgtcgcggca catctccttc acctgctccg ggccgccgag ggcgaggcgc gcgcgacgac
    11401 gcgcctcctc tgggctgtgc ccttgggcga tcaggtcgtc ggtatgctgt tcgagatgaa
    11461 agcgcagctc cttttcgagc tcctcttcgc atttcctgcg tcggagcagg cggtgccacc
    11521 agttcatcag gcgcctcctt cggacagttt gaggatgaga ccgacggctt cggccagtcg
    11581 cagccagccc gcggtttcgg tctcgagctg cgcccgccct ttgcgcgtca ggcggtagaa
    11641 cttcgcctcg cgccctgtct ccgtcgcctt ccagtcggcg tcgagcaggc cgcggttctc
    11701 cagccggtgc agcgcggggt agagcgagcc ctgcggaacc tgcaccaccc cgcgcgacgc
    11761 ctgttcgagg cgctgcgcta tcgcgtagcc gtggacaggc cccagcgcca cgatcttcaa
    11821 aatcaataaa tccagcgtcc cctgcggaag gtctgattta gtcgcgggca ttgaatgtta
    11881 cctccgtctt ctacatatta gggcagcata tgtagaagca caaggcatat acgggggcgg
    11941 gagggagaaa gttcggggcg ggtgagtcag gccgcgggcg cgccagttct tacgggctcg
    12001 cgtgaggcgg cagccgctca gtgatccggg tcaagggtgg gctgcggtcc gggcgccgca
    12061 gttcagccgg tgcgcagccg agggcttgtg cataagagac gctcgcggcc gggcgcgtgc
    12121 cgctgtcagg cgacaccggc ggggcgtcag gctttcgttt tgctgaacct gccccggccc
    12181 cacgcaaggt tgtacaggct cttccccgtc ctgtccttaa cctttatggt cgtgccgtag
    12241 cgcggcatct cgtactcgag gttttcgtcc acggcgaccg ggagcacgga cttcgtgaca
    12301 tcaacgaagc tgccgccgcg gtattcgtag aagtcgagct gcgtgctccc ttccacgtcg
    12361 gccttgacgg cgatgacgta actggagtcg gccttcctga acaggcacac gtacagggtg
    12421 ttctgcgcgc cgtcgccggg ggcgtagatg tagccgttct tcacgtccac gacggccccg
    12481 cgcttcgggt cgagcatcca gttcacgcgc tgctcttcgt cggcctcgaa atacttgtcg
    12541 ggcagcaggc ggtagtagtc gagcaccgtc ctgggctcgg cggtttgata aatgatcggg
    12601 ggctgtaggc tcaatgacgc gaaaagggtc agcaggtaaa ttttcagcat cttcgagtgt
    12661 gtctcctgag agatacttca ccgggcggcc cgcgccgcct cgcgtttgta tttatagccg
    12721 ggcgcgatga gtatatagtg ccgcgccgaa cctgaccgag tcacgggccc cgcaccaccg
    12781 gccccggcgt gcctttaacc gacgcgactt ttcgacgctg ccgaagcgac gggcttacca
    12841 aatcagtcgt agtttcacac cccgcccgcg gcgtctcatt ctacagcact acgtcagccc
    12901 gtagttcgcg cctgtccgta gtccccgccc gcgctcaaac ccacgcgggc ccgcttccga
    12961 cctcttcaca gcgctcgacg cccatgcccg tctgagcgat cacgaaaggt gagccctcat
    13021 gcgaagaccg aacccccgcc ctctccccgc ggccttagaa tttatggcgg tttattgcaa
    13081 tgttgttgcg aaacccttgt gctcgtggta gctttgttag gcctcaaggc gcttgtctct
    13141 cgtaacttgc tacctgaaag gcacgggtct tacttctcta accgacattc tacggctcac
    13201 tagagcctca acctctacct ccagcgtcta ttccgtgccg cctaatttgc ggtcgtcgga
    13261 gtgaacagcc acaacgccgg gcttccggct aacgaggaaa gtaagcgccc gtccgtccgc
    13321 cgccgcgcgg tcgccgcctg cctgacccga agactaaata atgaggaata acatgaatag
    13381 caagagcctc acgtctgccc gccgccgcta ctggatcgca ctgttcctta gctacgcgat
    13441 gctttccatg cagcttatgc ccgcggcggc cgcggcggcg cgcaccgcgg cgcccagggc
    13501 cgtcgtgagc acggcggccg agagcggcga cgcgggccat gcccctgtga ccacccccgt
    13561 ggcggccgcg cccgcgcccg tcgcgctcgc agcccccccc tcttcgaaca tcacggccac
    13621 aatgacggac gcggtggtgc cgggctcggg caacgacctg gacggcgacg gcagggccga
    13681 cccgggcgac aagattcagt acacggtgac cattacgaac aacggcccgg acgacgccac
    13741 taacgtcgag ttcagcgaca cggttgacgc taacaccacg ctcgtccccg gctcgataac
    13801 gacgcagccg ctcgcctcgc ccgacagcta cgacgtgata ggcaacgtcc gcatacagcc
    13861 cgacgcggcc gcaggcctgc tcaccaacga ctgcgacccg gccaccgacg ggggtccctg
    13921 cacgaacgcg gggcttacgg cctccggccc aacgagttcg acgcagggcg gcaacgtcac
    13981 ggtcaactcc aacgggagct tcagctacaa cccgcccgcg ggcttctccg gcacggacac
    14041 cttcacctac accgtcaccg actcgtcggg caagaccgac acggcgcagg tcacgctcaa
    14101 cgtcggcggc gccgtcatct ggttcgtgaa ggcgggcgca ccggggggcg gcgacggccg
    14161 cctgactagc cccttcaact gcctcgtggg cacgggctgc ttcgaccccg tcgccgcgga
    14221 cgaggccggc gacttcatct tcctcttcgc cggcagctat aacggcgggc tcacgctcct
    14281 cgacaacgag aagctcatcg gcgagggctc gacagactcg ctcgccacgc tcgccagtgt
    14341 cacgccggcc acctacagtg actcgctgcc cacgacgggc ggcacgccgc cggtgattac
    14401 gaccacgagc ctctcgacga acggcgtcaa cgtgggctcc ggtaacacgc tgcggggctt
    14461 cacggtcggc gacacaaccg ccatagacat cgcctcgggc gccagcttcg gcacactgac
    14521 cgtcagcgag gtcacgctcg gcggggccgg gcaggcgctc ggcctcctca acggcacgct
    14581 cagcgcctcg ttcctctcca tcggctcgac ctcgggctct cacggcctct tcctcaacca
    14641 ggtcgccggc tcgctcacct ccggcagcac gaccgtgtcg ggtccctcgc agggcatagt
    14701 catcacgaac tctaccggca acttcagctt cggcaacacg tccgtctcgg ccgccacggc
    14761 cggcatctcg gtaacgagca gctcggggac gaagaccttc ggcacgctcg cc
//
LOCUS       DASPKR010000761         4224 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1671157, whole genome shotgun sequence.
ACCESSION   DASPKR010000761 DASPKR010000000
VERSION     DASPKR010000761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4224)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4224
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1671157"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..3860
                     /locus_tag="VD968_19885"
     CDS             <1..3860
                     /locus_tag="VD968_19885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16711.1"
                     /translation="IEPERFAAGAPEEGGGRPAGDGGGSESSMNAWRDPIHHLRLFAN
                     YLTPRRGLLSYDTWRAVSVITRNLTLTWLVLLPVLTAVMLFGQLFFLVAPSTRDDFLT
                     KPPQAQAHRNTGEVFANRLKLIAMPVAGIAGLIGVLWIAWLLCLNDRSSLSDAALQIV
                     CLLAVLMIAVVVGIERIHLDALTAEIPEWALGAWLAAAGGLFAYALSWPVKVGQAPGM
                     DDPWVRKQWARSLRRNKISRIHTKLMVWMAVTAVVLLLAGFGHEFLIYILPDAVAAPA
                     TPGEPGASPSLLTKFSGLLPLLGAVGGSIFTALKAAPSADEKAQRRESSFITRAVFAV
                     TPGLVVIVLAVTVTWLAHQALVHFNSGGHDQMLPKVCTSAGILLSFALAVYEMKWEEK
                     IRPSWSLLFFAGLLATSTLWLANTLFPLLFTNKWQGALAVAFGAAVACGAVVVLIVLQ
                     RFNVLGLARRFADGDWARAEAIRRNVRRIAVALPVAGLLAAVFLAYRMAGEVRSGGDE
                     RDRFEALASLMPVALTALTASIILFRLLVVRKRNGRQRFELKAFRDTALGRSRQALAV
                     VGLACLLLPVAVVCWLHVAIVHEHKAPASLYVLSQDGRAELALMPLLLAALAGGIILF
                     HAVAARDKASRPEKYSTAQQFIAGLFNNHLSRFRLTGRLLELAGEHRGKVTLAAVGAS
                     VLLAGLAGRALSAQQAAAGAQPAAFIQGLAVSGNLIYVALLLCASLVLLRMSVVTPTE
                     CAAPAGAAGLAGAWRRRARDHSRGLAWLLAAGCIIVALFIGYTADASLAHAVTAKTKE
                     AAGVSASADTSAPLILRAGVIAGMVACFILAVFEMKWGKGDNRRSLWLLACAYATLTT
                     LFLVNSYDIAQFFGDPKTLVVLRSAFGLIVAVMVWVVALGWMVDPNGVSMHHFYKGRL
                     VRAYLGASNINRREQHKEIAELAADDDPYLADLKNCQRGAPYHIVNTTLNLVAGRDLA
                     TAQRSASSFVLSKRHCGSLRTNYRPTAKYMRGQLTLGTAIAASGAAVSPNMGSKKPTA
                     ALAMLLTLLNVRLGYWAPTPSRENWQMSQPRLWPFYLLREFLSQTNDVSSYCYLTDGG
                     HFDNTGLYSLVERGCRHIVLVDCGADPQPSCFQDLGEAIRRCRIDFGTEVKLDLGTFI
                     KTEGERPRQYFAVGGIRYSRKHAEALGWPLEHEEGSKEDKASRTGYIVYIKPSIIGSE
                     TADVRQYAIENEDFPQQTTANQWFDEAQFESYRRLGQICAKAAFGKLKSVEKLKRSTR
                     LSPALIDEMFAEVNLKFNACHQA"
     gene            3925..>4224
                     /locus_tag="VD968_19890"
     CDS             3925..>4224
                     /locus_tag="VD968_19890"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: protein motif:HMM:NF012413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0005542 - folic acid binding [Evidence
                     IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HYE16712.1"
                     /translation="MAIIGIVAVDRAGAIGKGGSLPWRYPSDMKFFREQTTGHAVLMG
                     HKTWLTLKAPFKGRLNIVLSRRAEPEPRESVVWLRDSESALALARYLKCDLFVIAG"
BASE COUNT          638 a         1488 c         1404 g          694 t
ORIGIN      
        1 agatcgagcc cgagaggttc gcggccggcg cgccggagga ggggggcggc cggcccgcag
       61 gggacggcgg gggcagcgaa agctccatga acgcgtggcg cgacccgatt caccacctgc
      121 gcctcttcgc caactatctg acgccgcgcc gcgggctgct cagctacgac acctggcgcg
      181 ccgtctccgt catcacgcgc aacctcacgc tcacgtggct cgtcctcctg cccgtcctga
      241 cggccgtcat gctcttcggc cagctcttct tcctcgtcgc tccctccacg cgcgacgact
      301 tcctcacgaa gccgccacag gcgcaggcgc accggaacac gggcgaagtg ttcgcgaacc
      361 ggctaaagct gatagccatg cccgtcgcgg gcatcgccgg gctgataggc gtgctatgga
      421 tagcctggct gctctgcctg aacgaccgct cctcgctctc cgacgccgcg ttgcaaatcg
      481 tctgtctctt ggcagtgctg atgatagccg tcgtggtagg catcgagcgc atacacctcg
      541 acgcgctcac cgcggagatt cccgagtggg cgctaggggc atggctggcc gcggccgggg
      601 gcctgttcgc ttatgctctg tcctggccgg tcaaggttgg tcaggcgccc ggcatggacg
      661 acccctgggt gaggaagcag tgggcgcgct cgctcaggcg gaataagatc agccgcatac
      721 acacgaagct gatggtgtgg atggcggtga cggccgtggt gctgctgctc gcgggcttcg
      781 gccacgagtt cctcatctac attctgcccg acgccgtggc ggcccccgcc acgccggggg
      841 agccgggcgc ttcgccctcg ctgcttacga agttcagcgg cctgctgccc ctgctcggtg
      901 ccgtgggcgg ctctatcttc acggccctga aggccgcgcc gtcggccgac gagaaggccc
      961 agcggcgcga atcctccttc ataacgcgcg ccgtcttcgc cgtgacgccg ggcctcgtcg
     1021 tcatagtcct cgccgtcacg gtgacgtggc tggcgcatca ggccctcgtc cacttcaaca
     1081 gcggcgggca cgaccagatg ctgccgaagg tctgcacctc cgccggcatc ctgctcagct
     1141 tcgcgctcgc cgtctatgag atgaagtggg aggagaagat tcgcccgtcg tggtcgctgc
     1201 tcttcttcgc cgggctgctg gcgacgagca cgctctggct ggctaacact ctgttcccgc
     1261 tcctgttcac gaacaagtgg cagggcgcgc tggcggtggc ctttggcgcc gccgtggcat
     1321 gcggggccgt cgtggtgttg atagtgctac agcgcttcaa cgtgctgggc ctggcgcggc
     1381 gcttcgccga cggcgactgg gcgcgggccg aggccatacg ccggaacgtg aggcgcatcg
     1441 ccgtcgccct cccggtggcg ggcctgctcg ccgccgtctt cctcgcctac agaatggccg
     1501 gcgaggtcag gagcggcggc gacgagcgcg accgcttcga ggcgctcgcc tctctcatgc
     1561 ccgtcgcgct gacggcgctg accgcgagca tcatcctctt ccgcctgctc gtcgtgcgca
     1621 agcgcaacgg gcggcagcgc ttcgagctca aagcgttccg cgacacggcg ctcgggcgca
     1681 gtcgccaggc gctcgccgtc gtcggcctcg catgcctgct gctgcccgtg gccgtcgtct
     1741 gctggctcca cgtcgccatc gttcacgagc acaaggcgcc cgcgagcctc tacgtgctca
     1801 gccaggacgg gcgcgccgag ctcgcgctga tgcctctcct gctggcggcg cttgccggcg
     1861 gcatcatact cttccacgcc gtggcagcca gggacaaggc gagccggccc gagaaatact
     1921 ccacggccca gcagttcata gccggcctct tcaacaacca cctgtcgagg ttcaggctca
     1981 ccggccggct cttggaactc gcgggcgagc acagagggaa ggtgacgctc gccgccgtcg
     2041 gcgcgagcgt cctgctggcg gggctagcgg ggagggcgct ctccgcgcag caggccgcgg
     2101 ccggggcgca gccggccgcc ttcatacagg ggctcgccgt gtcgggcaac ctcatctacg
     2161 tcgccctgct gctgtgcgcg agcctggtgc tgctccgcat gtcggtcgtc acgccgaccg
     2221 agtgcgcggc gcccgccggg gcggccgggc tcgccggggc gtggcggcgc agggccagag
     2281 accacagccg cggcctcgcg tggctcctcg ccgccggctg catcatcgtc gcgctcttca
     2341 tcggctacac ggccgacgcc agcctcgcgc acgccgtcac ggccaagacg aaggaggccg
     2401 cgggggtatc agcctcggcc gacacctccg cgcccctcat acttcgcgcg ggagtgatcg
     2461 ccgggatggt cgcctgcttc atcctcgccg tcttcgagat gaagtggggc aagggcgaca
     2521 accggcgctc gctgtggctg ctggcctgcg cctacgccac gctgacgacg ctcttcctgg
     2581 tgaacagcta tgacatcgcg cagttcttcg gcgacccgaa gacgctcgtc gtgctgcgca
     2641 gcgccttcgg gctgatagtc gccgtgatgg tatgggtggt ggcgctcggg tggatggttg
     2701 acccgaacgg cgtctcgatg caccacttct acaaggggcg gcttgtgcgc gcatacctcg
     2761 gcgcgtcgaa catcaaccgg cgcgagcagc acaaggagat agccgagttg gcggcggacg
     2821 acgaccccta cctcgcagac ctcaagaact gccagcgcgg cgcgccctac cacatcgtca
     2881 acacgacgct gaacctcgtc gcggggcgcg acctcgccac ggcgcagcgc tcggcctcct
     2941 ccttcgtctt atcgaagcgg cactgcggct cgctccgcac caactaccgg ccgacggcca
     3001 agtacatgcg cgggcagctt acgctgggga cggccatcgc cgcctcgggc gcggccgtca
     3061 gcccgaacat ggggtcgaag aagccgacgg ccgcgctcgc gatgttactc acgctgctca
     3121 acgtccgcct cggctactgg gcgccgacgc ccagccgaga gaactggcag atgtcgcagc
     3181 cgcggctgtg gcccttctac ctcctgcgcg agttcctctc gcagacgaac gacgtgtcct
     3241 cctactgtta cctcaccgac ggtggccact tcgacaacac cggcctctac tccctggtcg
     3301 agcgcggctg ccgccacatc gtcctcgttg actgcggcgc ggacccgcag ccctcctgct
     3361 tccaggacct gggcgaggcc atacgccgct gccggattga tttcggcacc gaggtcaagc
     3421 tcgacctcgg caccttcatc aagaccgagg gggagcgccc gcgccagtac ttcgccgtcg
     3481 gcggcatacg ctactcgcgc aagcacgccg aggcgctggg ctggccgctc gagcacgagg
     3541 aggggtcgaa ggaggacaag gcgagccgca ccggctacat cgtctatatc aagccctcga
     3601 taatcggcag cgagacggcc gacgttcgcc agtacgcgat agagaacgag gacttcccgc
     3661 agcagacgac cgccaaccag tggttcgacg aggcgcagtt cgagagctac cgccggctcg
     3721 ggcagatatg cgcgaaggcc gccttcggca agctgaagtc ggtcgagaag ctaaagcgct
     3781 caacgcgcct ctcgcccgcg ctcatcgacg agatgttcgc cgaagtcaac ctcaagttca
     3841 acgcgtgcca ccaggcctga gcgccgcacg cgcgcctcgg cgtgatagac tgtcggccgc
     3901 tctgaggagg cgcgcggcgg gaggatggcg attataggca tcgtggcggt tgaccgcgcc
     3961 ggggccatcg gcaagggcgg cagtttgccc tggcgctacc cctccgacat gaagttcttc
     4021 agggagcaga cgacgggcca cgccgtcctg atgggccaca agacctggct aacgctcaag
     4081 gcgcctttta aggggcggct gaacatcgtg ctttcgaggc gcgccgagcc ggagccgcga
     4141 gagtctgtcg tgtggctgcg cgactcggag tcggctctgg cgctagccag atatctcaag
     4201 tgcgacctct tcgtcatcgc cggc
//
LOCUS       DASPKR010000762         2725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1286893, whole genome shotgun sequence.
ACCESSION   DASPKR010000762 DASPKR010000000
VERSION     DASPKR010000762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2725)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2725
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1286893"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            208..1584
                     /locus_tag="VD968_19895"
     CDS             208..1584
                     /locus_tag="VD968_19895"
                     /inference="COORDINATES: protein motif:HMM:NF039907.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HYE16713.1"
                     /translation="MPGIKVNTLLTEESARAYTDKLLSFVKADDASVSVSSETYSHLR
                     FAANAFATSGRRENRTAGVTVWLKSGEGMKRGSATTNELDDASLRAAVEEAEALARIS
                     PVDREYVPTLARQAYKPVSGYAGSAADIAVADRARRVSEIIDACEKANVVGAGFHQSR
                     GQAGAFATKNGNFGYERSSLASLSMTVRTRDGSSSGYFNRSHFDAARLDTARVASEAI
                     RRAVEGQNAREVTPGSYPVILEPQAVADLLSSFAFSFDARSAEEGRSALSAPGGKTRR
                     GERFFDERLSVYSDPWHPELPGSMAAQGGLPAERVYLVRRGTVETLVYSRFWAQRQAA
                     QPTPGPVNTIIEAEGPTATLEEMIRATDRGLLITRFWYIRSIDPRTQSLTGLTRDGVW
                     YIEGGRIKHAARNLRFNQSITRMLAPGNVEMVGAPERVNSSEGQTAALLPALKLKSFT
                     FTSQSEAV"
     gene            1602..2246
                     /locus_tag="VD968_19900"
     CDS             1602..2246
                     /locus_tag="VD968_19900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16714.1"
                     /translation="MNTLPAADLRRKIAGVCLIAAPVLLLGSTVLRFGFGRFFTWYLT
                     MKLSFFFFAVGVLGLMHLLRGRADGSAHVGGGLALAGCLSGASIVTAAYILTKVAKLV
                     PKEEAGSLFLTVANSPLPGFFFPVGLLVLAVALWRKKVVPAWAALLFAAGAVLFPVGR
                     AAGLIWAVWACDVLLTVSLGAIGLMVLRWTVEEWSGSPAPGAAAAATEREAAVA"
     gene            complement(2306..>2725)
                     /locus_tag="VD968_19905"
     CDS             complement(2306..>2725)
                     /locus_tag="VD968_19905"
                     /inference="COORDINATES: protein motif:HMM:NF025426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4252 domain-containing protein"
                     /protein_id="HYE16715.1"
                     /translation="IQFVVSLLSDKDPEERKIKEAVVGLRGVYVKSFEFKEAGQFAES
                     DLADVRGQLGSPLWSRMIDIRTRGAEGGDAEVYVAREGGRVEGLALVVVEPKEVTVIN
                     IVGSVDVAKLRELDEAFNLPKIRIERKLSRATRSKRQ"
BASE COUNT          425 a          938 c          915 g          447 t
ORIGIN      
        1 cgacttctgg ggcgcctgcg acgcgctcgg cggcccccag acttaccagc taggcgggag
       61 cttcaacgac ggcaagggcg agccgggcca gtcgaacgcc gtctcgcacg gctgcccgcc
      121 cgcgcgcttc cgcgggataa acgtcctcaa cacttcggcg ggagcgtcgt aaagagctcg
      181 cgactaaagc aggagcggcc gagagagatg ccggggataa aagtcaatac gctgctcacg
      241 gaagagtcag cgcgcgccta cacggacaag ttgctctcgt tcgtgaaggc cgacgacgct
      301 tcggtgagcg tttcgagcga gacctattcg caccttcgct tcgccgccaa cgccttcgcg
      361 acgagcggcc ggagggagaa ccgcacggcc ggcgtgaccg tctggctcaa gagcggcgaa
      421 gggatgaagc gcggctcggc cacgacgaac gagttggacg acgcctctct tcgcgcggcg
      481 gtcgaggagg ccgaggcgct ggcgcgcatc tctcccgttg accgcgagta cgtcccgacg
      541 ctcgcgaggc aggcctacaa gcccgtctcc ggctacgcgg gctccgccgc ggacatagcc
      601 gtcgccgacc gcgcccgtcg cgtaagcgag ataattgacg cgtgcgagaa ggccaacgtg
      661 gtcggcgcgg gcttccacca gtcgcgcggg caggccggcg cgttcgccac caagaacggc
      721 aacttcggct acgagcgctc aagtttggcc tcgctctcga tgacggtgcg cacgcgcgac
      781 ggctcaagct ccggctactt caaccgcagc cacttcgacg ccgcgcgcct cgacaccgcg
      841 cgcgtcgcca gcgaggccat acgccgcgcg gtcgaggggc agaacgcgcg agaggtcacg
      901 cccggcagct accccgtcat cttagagccg caggccgtcg cagacctcct ctcctccttc
      961 gccttcagct tcgacgcgcg cagcgccgag gagggccgca gcgccctgtc cgcgcccggc
     1021 ggaaagacgc gccgcggcga gcgcttcttc gacgagcgcc tgagcgtcta tagcgacccg
     1081 tggcaccctg agcttcccgg ctcgatggcc gctcagggcg ggctgccggc cgagcgcgtc
     1141 tatctggtgc gcagggggac ggtcgagacg ctagtctatt cgcggttctg ggcgcaacgc
     1201 caagccgcgc agcccacacc cggccccgtc aacactatca tcgaggccga ggggccgacc
     1261 gccacgctcg aagagatgat aagggccacc gaccgcggcc tgttgattac gcgcttctgg
     1321 tacatacgct ccatagaccc gcgcacgcag tcgctcacgg gcctgacgcg cgacggcgtc
     1381 tggtacatag agggcgggcg cataaagcac gccgccagaa acttgcgctt caaccagagc
     1441 atcacgagga tgcttgcgcc cggcaacgtc gagatggtcg gcgcgcccga gcgcgtcaac
     1501 agcagcgagg gccagacggc cgccctcctg cccgccctca agctcaagtc gttcaccttc
     1561 acctcgcagt ccgaagcagt ctgagatagg aggattcccc tatgaacact cttcccgccg
     1621 ccgacctgcg acggaagata gccggcgtgt gcctgatagc ggcgcccgtg ctgctgctcg
     1681 gctcgaccgt gctgcggttc ggcttcggcc ggttcttcac gtggtacttg acgatgaagc
     1741 tgtcgttctt cttcttcgcc gtgggcgtgc tcgggctcat gcaccttctg cgcgggcgcg
     1801 cggacggctc ggcgcatgtc gggggcgggc tcgcgctcgc cgggtgcctg tcgggcgcga
     1861 gcatcgtgac ggccgcctac atcctcacga aggttgcgaa gttagtgccg aaggaggagg
     1921 ccggcagcct cttcctgacc gtcgccaaca gcccgctgcc gggatttttc ttccccgtag
     1981 ggctgctggt gctggccgtg gcgctctggc gcaaaaaggt ggtgccggcg tgggcggcgc
     2041 tgctcttcgc ggccggggcg gtgctcttcc ccgtggggcg ggcggccggc ctcatctggg
     2101 ccgtgtgggc gtgcgacgtg ctgctgaccg tctcgctggg cgcgattggt ttgatggtgc
     2161 tcaggtggac tgtcgaggag tggtcggggt cgcccgcgcc gggggccgcg gccgcggcga
     2221 cagagcgcga ggcggcggtc gcctgaagtg tggaagtttt tcggacgggc gcgcgcggaa
     2281 gaagcacgtc ccgcgcgccc gtctcttact gcctcttcga gcgcgtggcc cggcttagct
     2341 tgcgctcgat gcgaatcttg gggaggttga aggcttcgtc cagctccctg agcttcgcca
     2401 cgtcaaccga gccgacaatg ttgatgacgg tgacctcctt cggctcgacg acgacgagcg
     2461 ccagcccctc gacgcgcccg ccctcgcgcg ccacatagac ttcggcgtcc ccgccttcgg
     2521 cgccccgcgt ccttatgtca atcatcctcg accagagcgg cgagccgagc tgtccgcgca
     2581 cgtccgcgag gtcgctttcg gcgaactgtc ccgcctcctt gaactcgaag ctcttgacat
     2641 agacgccgcg caggccgacg acggcctctt taatcttcct ctcctccggg tctttgtccg
     2701 agaggagcga gacgacgaac tgaat
//
LOCUS       DASPKR010000763        18505 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_517638, whole genome shotgun sequence.
ACCESSION   DASPKR010000763 DASPKR010000000
VERSION     DASPKR010000763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 18505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18505)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18505
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_517638"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1311
                     /locus_tag="VD968_19910"
     CDS             <1..1311
                     /locus_tag="VD968_19910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16716.1"
                     /translation="QCATNGIEFAKSKEFSRAAAEAGLRYAYLQFDGIGNDANSHRQV
                     GNLFDVKLRAIDNLHAAGVEIVLVITLVNGINNDQVGSVIRFALDNPKKIAFLSFQPV
                     SFTGRDEEITDERRMQQRYTLSHLAQDVKKQVGITEPTRDWFPLSLMGAFADFADLAH
                     GPDAEWGQVSCGCHPNCGVGTAVMIDKETKDMRPVPEFLNIPGLVRDMQKITDAGRGK
                     WTSNIMMGLALLKHYNPYKSPTHFTLYELFKKFDKSFGLTGRSYGRVDGRRSKQDIEA
                     RRSDRWNFLFIAGMWFQDLFNYDFRRTEMCIIPYGTQEGEISFCAYNTGIGWRNIIEQ
                     MHQNATVAQWYKEHGRHEIFAKGKEVALADTPVSLVLNEVDLQRPNKPQMEGPKTAAE
                     EAAMMRKLYQEMVLKKKLGADVEKNTPVQIKGLSRKKEGETANV"
     gene            1446..1670
                     /locus_tag="VD968_19915"
     CDS             1446..1670
                     /locus_tag="VD968_19915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16717.1"
                     /translation="MAVDKKHEVTVKVRVLELSKAGSGIELEVFAEGEKLGEIEIGHG
                     SFGWRKASGKRGFQRVDWTTFANWLNEKLY"
     gene            1740..2510
                     /gene="surE"
                     /locus_tag="VD968_19920"
     CDS             1740..2510
                     /gene="surE"
                     /locus_tag="VD968_19920"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: protein motif:HMM:NF001490.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HYE16718.1"
                     /translation="MARILLTNDDGIHSDGLAKLEESLRALGDVYVVAPASEMSGASH
                     SLTLSRPLRIRQIDERHWTVDGTPTDCVTLALNRILGDAERPDLCCSGINYGANLGDD
                     ASYSGTVAGALEATILGVPGLAFSLVARENFDFTEAARFALSAARKVLEEGLPEGTLL
                     NINVPPGEVRGVRVTRQGIKKARPIITEHIDPRGKAYYWIGEEVFSSAHEDGTDYSAV
                     EAGCVSVTPMRSDMTDHSALVALDGWVTLRCEEVARED"
     gene            2577..3254
                     /locus_tag="VD968_19925"
     CDS             2577..3254
                     /locus_tag="VD968_19925"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: protein motif:HMM:NF001453.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HYE16719.1"
                     /translation="MISDWQAAQASGFRIPRARMVERLRDHYRISDARVLDAMAEVPR
                     HLFVPEALQSRAYGDHALPIAANQTISQPYIVARMTELLEVDKESRVLEIGAGSGYQT
                     AVLARVAGQVYAIERIAELARDAQARIRRLGIYNATVKCFDGTLGWSAHAPYDAVLVA
                     AGGPEVPEPLLAQLKVGGRLVIPVGPARDSQRLVRVVRTEGGFEHEEHGPCAFVPLIG
                     RYGWAAS"
     gene            3275..3955
                     /locus_tag="VD968_19930"
     CDS             3275..3955
                     /locus_tag="VD968_19930"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HYE16720.1"
                     /translation="MESITELLQQIKGYLDPRTIAAAGYVVLILVVFAETGLAMGFFL
                     PGDSLLVVAGIFAARGDLNVVVLLVSLFVAAVVGDAVGFWTGAKLGPRLFKRQKSLVF
                     RPSHLEKAHAFYEKYGGKTIIIARFVPIIRTFAPIVAGAANMEYRRFVIYNIVGGFAW
                     VFSMILAGYFLGNLLRDRFGVNLDEHIEWVVIIVVALSLMPPLIEYLKHRREKKARLR
                     DGAGDVQV"
     gene            3994..4067
                     /locus_tag="VD968_19935"
     tRNA            3994..4067
                     /locus_tag="VD968_19935"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4028..4030,aa:Pro,seq:cgg)
     gene            complement(4118..5941)
                     /locus_tag="VD968_19940"
     CDS             complement(4118..5941)
                     /locus_tag="VD968_19940"
                     /inference="COORDINATES: protein motif:HMM:NF014851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 2 TIM barrel-domain
                     containing protein"
                     /protein_id="HYE16721.1"
                     /translation="MTITDFGFTRDREGAQAVQEYLNPLPRSVVRPNEYELLDGEWRF
                     DLDLEDRGLSRKWYLGHDYKGKATWPGSVEAHMTEAREAQEQSDSAWQDTVVAWYERE
                     FTIPEHWFRSPSTIAQVTFGACGYETRVWLNGRALVTVEGEEAHLGEYTSFSYEMPPE
                     LLQLVNRITVRIADSMDAEIPRGKQQSHVYKRGGIWYQTYTGAVRSVWVEPVERNRLR
                     SRLNVISSHRDRFVSFDLTTRVHDPGLYGLILLVTERGSRRPLASTKVTLPLEAGDKR
                     QRVTLEIPSASAWSPAEPKLYQLVAQLGGPGGTVSQIETHFGLRTIEARGRHVYLNDE
                     PIYLDGILYQPGTATYEQMRRHMRAMKELGCNLVRVHISGIDPRIYDLADETGMLLWV
                     EVPSPHSSSQRSRENHWAEMMRMLVHIGSHPSVVIWSLYNEDWGAQDIATSEETRRYI
                     ADAYDYMRLNHPQVLVVDNDGWHHVSREGRLKSDLLTAHLYTPSPSHWCEMLDNFVAG
                     SIEGVAVKPLVVGDPFFHRGQIPLVVSEWGGFGFSDYGGPDEAAEKAERIRAFKHELR
                     SRPIAGDVYTQATSIEDENNGLINPETGELLVPPGSLSSDA"
     gene            6580..7905
                     /locus_tag="VD968_19945"
     CDS             6580..7905
                     /locus_tag="VD968_19945"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HYE16722.1"
                     /translation="MKNLKETQERDGARRRTNGSGAVKGGGAALNLEDWQTGEGGGGV
                     EYDLICLSHLRWDFVYQRPQHLLSRCARDRRVFFFEEPIYGDDYRLDVKLSDDGVFVA
                     VPHLPEGVSGVAAEALQQALLNRMMAEHGVANYVLWYYTPMPVAWARHLRPLAVVYDC
                     MDELSAFKGAPPALKEREAELFRRADLVFTGGQSLYEAKRGKHPQIYAFPSSIDRAHF
                     AQARGDVAEPADQAGIPRPRMGFFGVVDERLDIELLDGLALARPDWQFVIVGPVVKID
                     PASLPRHANLHYLGGKSYKELPAYIAGWDVAALLFARNEHTRYISPTKTPEYLAAGKP
                     VVSTTIRDVVRPYGELGLVHIADTVEEFVRAAEPHMTGEASGRAEWLERVDDFLAENS
                     WDKTWARMSELIEAVAARRLGASYGRFMVVGQPDAARPTTGALAAAAGD"
     gene            8002..9093
                     /gene="glf"
                     /locus_tag="VD968_19950"
     CDS             8002..9093
                     /gene="glf"
                     /locus_tag="VD968_19950"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008767 - UDP-galactopyranose mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009273 - peptidoglycan-based cell wall
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HYE16723.1"
                     /translation="MFDYLVVGAGFAGSVIAERLARVAGKKVLIVDRRNHIGGNAYDH
                     YNDDGLLVHRYGPHIFHTNSREVFEYLTNFTEWRQYQHRVLASVDGMLLPIPINLDTI
                     NRLYGLNLNSFQVEEFFASKAEKREPVRTSEDVVVGRVGRELYEKFFRNYTRKQWGLD
                     PSELDASVTARVPTRTNRDDRYFTDTYQAMPKHGYTRLFENMLDHPNIKVMLNTDYRD
                     IERVVPFREMIYTGPVDEFFDCRYGKLPYRSLEFKHETLEEEVHQPAPVINYPNDYLY
                     TRVTEFKYLTGQRHPKTAIVYEFPRGEGDPYYPVPQPANAELYQKYKSLADATPNVHF
                     VGRLATYKYYNMDQVVAQALTVFKKIAGR"
     gene            9128..11377
                     /locus_tag="VD968_19955"
     CDS             9128..11377
                     /locus_tag="VD968_19955"
                     /inference="COORDINATES: protein motif:HMM:NF012457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HYE16724.1"
                     /translation="MSLNLQGGPAPELWAGFECTVNRVGDRYFDQLERSGHARRAEDL
                     DLLAWMGARAVRYPVLWERTAPEGLSAADWRWADGRLARLRELGVRPIVGLVHHGSGP
                     RYTGLLDPSFPEKLAEYARAVAERYPWVEDYTPVNEPLTTARFCGLYGHWHPHGRDAG
                     TFARCLVAELRGTVLAMRAVRLVNPSARLVQTDDLGKTHSTPLLRYQADFENERRWLT
                     FDLLAGRVTREHPVRGYLLQAGVAESELDWFCENACPPDIVGINHYLTSERFLDERLA
                     RYPASTHGGNGRHRYADVEAVRVCAEGAAGPRVLLREAWERFGLPVAVTEVHLGCTRE
                     EQLRWLEEVWSAACSLRADGADVRAVTAWALLGSFDWDSLVTREAGSYEPGAFDLRAP
                     RQRPTAVAKRLKEFAAGRQECHPSAESPGWWRRLDRLIYPAVERRAGARLSAGGEWVK
                     GGGPARPILITGATGTLGRAFARLCSARGLSHRLTSRVEMDIACAESVAGVLEQEKPW
                     AVVNTAGYVRVDDAEREPHLCFRENTAGAETLARECARRGVQLLTFSSDLVFGGENRT
                     GPYVESDETAPLNVYGRSKAEAERLVLAALPSALVVRTSAFFGPWDEHNFVTAALRAL
                     AAGEEFVAASDYVVSPTYVPDLVNACLDLLIDGEAGVLHLASTGAITWAEFARRAAEV
                     AGLDAALVVGRPVASLGLAAPRPTYTALASERGSLLRPLEAALAAFAAERAPASREAP
                     TRGRPRRRA"
     gene            11513..12325
                     /locus_tag="VD968_19960"
     CDS             11513..12325
                     /locus_tag="VD968_19960"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYE16725.1"
                     /translation="MASTESSLTNDVQAASLTGGGGTGTQTSGDGGVTMPNVGQTERW
                     VSTIGGGALALYGITRGSLGGIALALVGAALIQRGYTGHCALYESIGYSSTGDKGLRN
                     SENVSVPGERGIKLEKSVTVNRPAAELYSFWRNFENLPRFMNHLEAVHVTGAGRSHWV
                     AKAPAGTTVEWDAEVYNEKENELIAWRTLEGADVASAGSVHFEPAQGGAATTVRVVLK
                     YDPPGGAVGAAVARLFGENPEQQIDEDLRRFKQIMEGAQSAGSEASGRGASA"
     gene            complement(12432..14603)
                     /locus_tag="VD968_19965"
     CDS             complement(12432..14603)
                     /locus_tag="VD968_19965"
                     /inference="COORDINATES: protein motif:HMM:NF025253.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber domain-containing protein"
                     /protein_id="HYE16726.1"
                     /translation="MALLTALSAPALAQGEAETQGALASAAKPARGAVRLPAAKAGQT
                     RLEVYGPSGELVFDSGFQAGEVNWSLEDASGRQVADGSYRLQISRKGDSGKVGTSEGS
                     VKVESGQVVAQTGVADAATMNVDEAIVFSAPANVETYGRDIHLSDNKGGLRFYAMPSM
                     TNVPQGAALQFFGNQSPYFPGQAFFDSGAHDQAAFIVRTAPSNSLVSERMRVTAFGNV
                     GIGTPTPTERLEVAGNLKLSGAGSGITFADGSRLTSAPTGGGESPTGNDIVAKINEAT
                     TTGKINASKLAAAVAKTNAANNWTAANTFQLGISVNNSQITNVGNPVSAGDAANKAYV
                     DANFVKFVPGAEQLSVGDANGTAPMINLRGGATCCSGPGGHTPAWFKVFQNGSFVATG
                     NLGIGVSPMQGKGYRTSWDSYKGAFRSGYADNEWDDATVGFFSWAGGSNSTAEGLYAF
                     AFGDTNFARSTSSIAFGSGNEVKGAAGFSAGAGNRVCDTYGVAFGNKAQSGGPLINGK
                     CDPDTFNIRGLAAVAIGYNVTADQDHTTALGKFASNNGFIGTFIWSDGSATASADTFR
                     NTANNEFAARATGGFRFRTNLGGTTGCNLPAGSGVFNCTSSRTTKENFMAVSGEDILS
                     RMRKVPVSSWNYITEGQQVRHLGPMAEDFHAAFKLGTDEKSIGVLDIAGVSFAAIKAL
                     DERTAELQQKTEEVEQLREKVNTLEQRLAALEQLIRAGDKK"
     gene            14915..15067
                     /locus_tag="VD968_19970"
     CDS             14915..15067
                     /locus_tag="VD968_19970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16727.1"
                     /translation="MADEERSEEHGGGTGGQGGEATGDPGRTPGKAEGGEETVEEDLR
                     QKGAEG"
     gene            15222..>18505
                     /locus_tag="VD968_19975"
     CDS             15222..>18505
                     /locus_tag="VD968_19975"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HYE16728.1"
                     /translation="MVKLKILVVLLFTAFSVALLFTDNPAHAFSARPPAGHTRAPGEF
                     ECSECHVVEDPGTGKLKLSVPQSYVPGQSYDVSVTHENADPTRVRWGFQLTALDQSDA
                     RAGTLAPLDDKTQAVDGQGPFPSRQYIEHTSAGTFSGQQNGASWAFKWTAPAEDVGPV
                     TFYVAGNQANGDGSSSGDNIYFTFAVSQPAPAAPDFSLSVTPSSRTLPQGGSTTYDLT
                     VTPLNGFTGEVTLGVSGAPAQSVASFFPEPVEITDATPKTSQFSISPQFAAPGSYTLT
                     FTAASGALSHSAQAAFNVIKADDADVSITQSVSPNPAQAGADVKFTYTFTNNGPGQAT
                     SPLVTIKFPREHGGFAKGSGTCTLIPGDTEVTYFCLLANHPAGSSETIDFTLRPTQPG
                     PFQITASAKANENDPDQSNNTVSAAIPVAPLTTGPRMTVAGLGVRTVVGGLDAPTSMA
                     FIGPDEFFVLEKNTGRVIHVLNGQKKGVVLDLPVNSASERGLLGIAVSPSFGSHDSRF
                     VYLFWTESSTSGDTTGVGQVSLLGNRVDRFVWDGEKLTQDINIIRMRALQTDEGQPPR
                     GNHNGGVLRFGGDGMLYILIGDVGRRGLLQNIRSGAPVPDDQFGGPEPDDEHLSGVIL
                     RLNEDGTTPTDNPFFDAQTGLTGEAAENVKKIYAYGIRNSFGMDFDPASGGLWAQENG
                     DDSFDEINSLGRGSNSGWAQLMGPSSRVAEFKEIESTKYNFTLEQNRWPPSAIASTPA
                     DALARLYQLPGSHYREPEFSWKYSVAPSAVGFVRGEALGARYRNRLLVGAASTTLLGG
                     YLMSFDLNDSRENFTFADPRLADGVADNSDKFDLTESESLVIGRDFGITTDIKNGQDG
                     NLSPIVYVVSHTNGAVYEIFPKPALFVARLDGAQETPPNSSQARGLATLLLNPDGLTG
                     RVSLRFQNLSSAQTTARLHGPAPAGQSGPPVLDLPAGNFTDFSITLTPQQASDLRAGL
                     LYISVRSQNFPAGEIRGQFGAVNASSAVEVEAGDGSVVEGARTKTVTVVRLGDTTQPG
                     EVEYETQDGTASERTDYTTARGTLRFAAGETSKTFDVLITDDAFQETDETFGVALSTA
                     AGDVSAP"
BASE COUNT         3172 a         6220 c         6150 g         2963 t
ORIGIN      
        1 cagtgcgcga cgaacggcat cgagttcgcc aagtcgaagg aattctcccg cgcggcggcc
       61 gaggccggac ttcgatacgc ctacctgcag ttcgacggca tcggcaacga cgccaactcg
      121 caccggcagg tcggcaacct cttcgacgtt aagctgcgcg ccattgacaa tctgcacgcg
      181 gcgggcgtcg agatcgtgct cgtcatcacg ctggtgaacg gcatcaacaa cgaccaggtc
      241 ggctccgtca tacgcttcgc gctcgacaac ccgaagaaaa tcgcgttcct ttcgttccag
      301 cccgtctcct tcacgggccg cgacgaggag atcacggacg agcgccgcat gcagcagcgc
      361 tacacgctct cgcacctcgc gcaggacgtg aagaaacagg tcggaatcac cgagcctacg
      421 cgcgactggt tcccgctcag cttgatgggc gccttcgcgg acttcgcgga cctcgctcac
      481 ggccccgacg ccgagtgggg tcaggtctcc tgcggctgcc acccgaactg cggcgtcggc
      541 acggccgtca tgatagacaa ggagacgaag gacatgcgcc ccgtccccga gttcctgaac
      601 atcccggggc tcgtgcgcga catgcagaag atcactgacg ccgggcgcgg caagtggact
      661 tctaacatca tgatggggct cgcgctcctc aagcactaca acccgtacaa gtcgccgacg
      721 cacttcacgc tctacgagct gttcaagaag ttcgacaagt cgttcggcct gactggccgc
      781 tcctacggcc gcgttgacgg caggcgctcg aagcaggaca tcgaggcgcg ccgctccgac
      841 cgctggaact tcctgttcat cgccggcatg tggttccagg acttgttcaa ctacgacttc
      901 cgccgcaccg agatgtgcat cattccctac ggcacacagg agggcgagat ctccttctgc
      961 gcctacaaca ctggcatcgg ctggcgcaac atcatcgagc agatgcacca gaacgcgacc
     1021 gtcgcgcagt ggtacaagga gcacggccgc cacgagatct tcgccaaggg caaggaagtg
     1081 gccctcgccg acacgccggt cagcttggtg ctgaacgaag ttgacctcca gcggccgaac
     1141 aagccgcaga tggaggggcc gaagacggcg gccgaggagg ctgcgatgat gcgcaagcta
     1201 tatcaggaga tggtcttgaa gaagaagctc ggcgcggacg tggagaagaa cacgcccgtc
     1261 cagataaagg gcctctcgcg caagaaggaa ggcgagacgg cgaacgtcta acctcgccgt
     1321 aaatctgaca gacagaaaag ccccgcgggc gcacgcaacg cccgcggggc tttcgccgtc
     1381 gggcgccgtg cgcgtaagat gagggcgagg ctgctctgac tccccgcgtc gaaaggagaa
     1441 ccctgatggc tgtggataag aagcacgagg tgacggtcaa ggttcgggtg ctcgagctct
     1501 cgaaggccgg cagcggcata gagctcgagg tcttcgccga gggcgagaag ctgggcgaga
     1561 tagagattgg ccacggctcc ttcggctggc gcaaggcgag cggcaagcgc ggcttccagc
     1621 gcgttgactg gacgacgttc gcaaactggc tcaacgagaa actctactga cgggcgcggc
     1681 ccgtcgggct tgcttgaata atccggggcg ttcatgtgta atggtcgccg gttaaaaaca
     1741 tggctcgcat tcttcttacg aacgacgacg gcatacactc agacggcctc gcgaaactcg
     1801 aagagtctct gcgcgcgctc ggcgacgttt acgtcgtggc gcccgcctcc gagatgagcg
     1861 gcgcctcgca cagccttacg ctctcgcgcc ccctgcgcat ccggcagata gacgagcgtc
     1921 actggactgt ggacggcaca cccaccgact gcgtcacgct cgcccttaac cgcatactcg
     1981 gcgacgcgga gcggcccgac ctttgctgct cgggcatcaa ctacggcgcg aaccttggcg
     2041 acgacgccag ctactcaggc accgtcgcgg gcgcgctgga ggcgactatc ctcggcgtgc
     2101 ctgggctcgc cttcagcctg gtggcgcgcg agaacttcga cttcacggag gcggcgcgct
     2161 tcgcgctctc ggccgcgcgc aaagtcctcg aagaggggct gcccgagggg actctgctca
     2221 acatcaacgt gccgcccggc gaggtgcgcg gcgtgcgcgt cacacgccag ggcataaaga
     2281 aggcgcgccc catcatcacc gagcacatag acccgcgcgg caaggcttat tactggatag
     2341 gcgaggaggt gttctcctcc gcgcacgagg acggcacgga ctactccgcg gtcgaggccg
     2401 gctgcgtctc cgtgaccccg atgcggagcg acatgaccga ccactcggcc ctcgtagcgc
     2461 tcgacggctg ggtgacgctg cgctgcgagg aggtcgcccg cgaggactga agcggcgcgc
     2521 ggcccgttaa agattcactt cccccggctt aactcgagaa aaggtctctg gctcccttga
     2581 tttccgactg gcaggccgca caggcgtcgg gcttccgcat accacgggcg cgcatggtcg
     2641 agcgactgcg cgaccactac cgcatcagtg acgcgcgcgt gctcgacgcg atggccgaag
     2701 tgccgcgcca cctcttcgtc cccgaagcct tgcagtcgcg cgcctacggc gaccacgccc
     2761 tgcccatcgc cgccaaccag accatatcgc agccctacat cgtcgcgcgc atgacggagc
     2821 tgctcgaagt tgacaaagag agccgcgtgc tggagatagg cgcgggctcc ggctaccaga
     2881 cggccgtgct ggcgcgcgtg gccgggcagg tctatgcaat cgagcgcatc gcggagcttg
     2941 cgcgcgatgc gcaggcgcgc ataaggcgcc tcgggatata caacgcgacg gtcaagtgct
     3001 tcgacggcac gctcggctgg agcgctcacg cgccctatga cgcggtgctc gtcgcggcgg
     3061 gcggccccga ggttcccgag ccgctgctcg cgcagctcaa ggttggcggc cgcctcgtca
     3121 tccccgtcgg cccggcgcgc gactcgcagc gcctcgtgcg ggtcgtaaga accgagggag
     3181 gtttcgagca cgaggagcac ggcccctgcg ccttcgtccc gctcataggg cgctacggct
     3241 gggccgcgag ctaggcgcgc gcacttctaa gaacatggaa tcaatcaccg aacttctgca
     3301 gcagataaag ggctacctcg acccgcggac tatcgcggcg gccggctacg tcgtgctcat
     3361 actcgtcgtg ttcgccgaga cggggctggc gatgggcttc ttcctgccgg gcgactcgct
     3421 gctcgtcgtc gccgggatat tcgcggcgcg cggcgacctg aacgtggtcg tgctgctcgt
     3481 gtcgctgttc gtggcggcgg tcgtgggcga cgcggtcggc ttctggactg gcgccaaact
     3541 cggcccgcgc ctcttcaagc gtcagaagtc gctggtcttc cgcccgagcc acctcgagaa
     3601 ggcgcacgcc ttctacgaga agtacggcgg caagaccatc atcatcgcgc gcttcgtccc
     3661 catcattcgc acgttcgcgc ccatcgtcgc cggggcggcg aacatggagt acaggcgctt
     3721 cgtcatctac aacatcgtcg gcggcttcgc gtgggtcttc agcatgatcc tggccggcta
     3781 cttcctcggc aacctcctgc gcgaccgctt cggcgtcaac ctcgacgagc acatcgagtg
     3841 ggtcgtcatc atcgtcgtcg cgctctcgct catgccgccc ctcatcgagt acctcaagca
     3901 ccggcgcgag aagaaggccc gactgcgcga cggcgccggc gacgtgcagg tttgacacgc
     3961 cgcggccgcg cccttagaat gcctccaacg ctgcggggcg tggctcagcc tggtagagcg
     4021 ctcggttcgg gaccgagagg tcggaggttc gaatcctctc gccccgattg gaagtagaga
     4081 agtgacggcc actcgttgag ggtggccgtc tttgttttca ggcgtcggag gagagggagc
     4141 cgggtgggac gaggagctcg ccggtctcgg ggttgatgag gccgttgttc tcgtcctcga
     4201 tgctcgtggc ctgcgtgtaa acgtcgccgg ctatggggcg cgagcgaagc tcgtgtttga
     4261 aggcgcgtat gcgctcggcc ttctcggcgg cctcgtcggg gccgccgtag tcggagaagc
     4321 cgaagccgcc ccactcgctc accacgagcg gtatctggcc gcggtggaag aaggggtcgc
     4381 cgacgacgag gggcttgacg gcgacgcctt cgatgctgcc cgcgacgaag ttgtcgagca
     4441 tctcgcacca gtggctcgga gacggcgtgt agaggtgcgc cgtcagcagg tcactcttga
     4501 ggcggccttc tcgcgagacg tggtgccagc cgtcgttgtc aacgacgagc acctgcgggt
     4561 ggttaaggcg catgtagtcg tacgcgtcgg cgatgtatcg ccgcgtctcc tcgctcgtcg
     4621 cgatgtcctg cgccccccaa tcctcgttgt acaaactcca tatcacgacg gacgggtgcg
     4681 agccgatgtg gacgagcatc ctcatcatct cggcccagtg gttctcgcgg ctgcgctggc
     4741 tcgagctgtg cgggctcggc acctcgaccc acaggagcat gcccgtctcg tccgcgaggt
     4801 cgtatatgcg cgggtcaatg cccgagatgt ggacgcgcac caggttgcag cccaactcct
     4861 tcatcgcgcg catgtggcgc cgcatctgct cgtaggtggc cgtgcccggc tggtagagga
     4921 tgccgtcgag gtatatgggc tcgtcgttga gatagacgtg gcggccgcgc gcctcgatgg
     4981 tgcgcaggcc gaagtgcgtc tctatctgcg agacggtgcc gccggggccg ccgagctgcg
     5041 cgacgagctg atagagcttg ggctcggcgg gcgaccacgc ggaggcagaa ggtatctcga
     5101 gcgtcacgcg ctgccgcttg tcgcccgctt cgagcgggag cgtgactttc gtcgaggcga
     5161 gcgggcggcg gctcccgcgc tccgtgacga gcaggatcag gccgtagagg ccggggtcgt
     5221 gcacgcgcgt cgtcagatcg aaggagacga agcggtcgcg gtggctgctg atgacgttga
     5281 ggcgcgagcg caggcggtta cgctctaccg gctccaccca gacgctacgg acggcgcccg
     5341 tgtaggtctg ataccagatg ccgccccgct tatagacgtg cgactgctgc ttgccgcgcg
     5401 gtatctcggc gtccatcgag tcggcgatgc gcaccgttat gcggttgacc agctgcaaga
     5461 gttcgggagg catctcgtag ctgaaagagg tgtactcgcc gaggtgcgcc tcctcgccct
     5521 cgacggtgac gagggcgcgg ccgtttagcc acacgcgcgt ctcgtaaccg cacgcgccga
     5581 aggtgacctg cgcgatggtg ctaggggagc ggaaccagtg ctccgggata gtgaactcgc
     5641 gctcgtacca tgcgacgacg gtgtcctgcc acgcggagtc ggactgctcc tgcgcctcgc
     5701 gcgcctccgt catgtgcgcc tcgacggagc cgggccaagt ggccttgccc ttgtaatcgt
     5761 ggcccaagta ccacttcctg ctgaggccgc ggtcttctag gtctaggtcg aagcgccact
     5821 caccgtcgag caactcgtac tcgttcggcc gcacgaccga gcggggcagc gggttcaaat
     5881 actcctggac ggcctgcgcg ccctcgcggt cgcgcgtgaa gccgaagtcc gtaatcgtca
     5941 tcaacctctc cgaagaagta cgcgtctcga aaaacgtcct ctaaatataa accaacgagc
     6001 gcgggccgca taccgcgcgc gtgtaatgtg tctgtcaacg tacagaaagc gctcacgcgg
     6061 ggcgcgtata atcccggcac tggtttaata gcgcataacc attatcaaag gccgcgccgc
     6121 ccttattacg tcggggcagc gcgccatata gaagcgtagg tcaaaaactc tctacgggcg
     6181 tagaaattta gtagagaatc gaaacgcttc tatgaaagtt ttcggccata atccccccgc
     6241 ttaagatgaa ggcgggcgat acgagaggcg ggccggccat aggcggctcg cctttccttt
     6301 gccgacccct tatagttctt caattccccc agaagaacgc gagcgcgagt tcccctgacc
     6361 gaaactcgtc gcgccgcaga aagccaggca gcaaagactg acggccgctg ttaatcaagc
     6421 ggcctctgtt gccggaagct ttcctccttg gccgcgggct ttagcgcggc gctttcaacc
     6481 gcagacgctt tcgagagcga gcgggtaatc gtcgccgtcg cgcgcgtggc gcggcgggga
     6541 gtcggcgatt agtcattaat agaaccggga aagggattta tgaaaaacct gaaagagact
     6601 caagagcgcg acggcgcacg gcggcgcacg aacggcagcg gagctgttaa gggcggcggc
     6661 gcggccttga acctcgaaga ctggcagacg ggcgaaggcg gcgggggcgt cgagtacgac
     6721 ctgatatgcc tttcgcacct tcgctgggac ttcgtctatc agaggccgca gcacctcctg
     6781 agccgctgcg cgcgcgaccg aagggtcttc ttcttcgagg agcccatcta cggcgacgac
     6841 taccggctcg acgtgaagct gagcgacgac ggcgtcttcg tcgccgtccc gcacctgccc
     6901 gagggcgtga gcggcgtcgc ggccgaggct cttcagcagg ccctgcttaa caggatgatg
     6961 gccgagcacg gtgtggcaaa ctacgttctc tggtactaca cgccgatgcc ggtcgcgtgg
     7021 gcgcgccacc tgcgcccgct cgcggtcgtc tatgactgca tggacgagct ctccgcgttt
     7081 aagggcgcgc cgcccgcgct caaggagcgc gaggccgagc tgttccgccg cgcagacctc
     7141 gtcttcaccg gcggtcagag cctctacgag gctaagcgcg gcaagcaccc gcagatttac
     7201 gccttccctt cgagcattga ccgcgcgcac ttcgcgcagg cgcgcggcga cgtggccgag
     7261 cccgcggatc aggccggcat tccgcgcccg cgcatgggct tcttcggcgt ggtggacgag
     7321 aggctcgaca tcgagctgct cgacggcctc gcactggcgc ggcccgactg gcagttcgtc
     7381 atcgtcggcc ccgtcgttaa gattgacccg gctagcctgc cgcgccacgc gaacctgcac
     7441 tacctcggcg gaaagtctta caaggagctg cccgcgtaca tcgccggctg ggacgttgcg
     7501 gcgctactgt tcgctcgcaa cgagcacacg cgctacataa gcccgacgaa gacgcccgag
     7561 tacctcgcgg ccggcaagcc cgtcgtctcc accacgatac gcgacgtggt gaggccctac
     7621 ggcgagcttg ggctcgtcca catcgccgac acggtcgagg agttcgtgcg cgccgccgag
     7681 ccgcacatga cgggcgaagc ctccggccgg gccgagtggc tcgagcgcgt tgacgacttc
     7741 ctcgcggaga actcgtggga caagacgtgg gcgcgcatgt ctgagctgat cgaggccgtg
     7801 gccgcgcgca ggctcggcgc ctcttacggg cgcttcatgg tagtcgggca gcccgacgcc
     7861 gcgaggccca cgaccggcgc gctcgccgct gcggccggcg actgactgcg gccgtgaagt
     7921 agagaggggg cgcggctcac gtttgcgccc gcccccgtcg ttaataaatt agtattcata
     7981 acgggaagga aaggtgtgtt gatgttcgat tacctcgtgg taggggccgg cttcgcgggg
     8041 agcgtgatag ccgagcggct ggcgcgcgtc gcgggcaaga aggtcttgat tgttgaccgc
     8101 cgcaaccaca tcggcggcaa cgcctacgac cactacaacg acgacggcct gctcgtccac
     8161 cgctacggcc cgcacatatt ccacacaaac tcgcgcgagg tcttcgagta cctgacgaac
     8221 ttcaccgagt ggcggcagta ccagcaccgc gtgctcgcct ccgtggacgg gatgctgctg
     8281 cccatcccca tcaacctcga cacgataaac cgcctctacg ggctcaacct gaactcgttc
     8341 caggtcgagg agttcttcgc gtcgaaggca gagaagcgcg agccggtgcg cacgagcgag
     8401 gacgtggtcg tgggccgtgt ggggcgcgag ctgtacgaga agttcttccg caactacacg
     8461 cggaagcagt ggggcctcga cccttcggag cttgacgcct ccgtgactgc gcgcgtgccg
     8521 acgcgcacga accgcgacga ccggtacttc accgacacct accaggcgat gcccaagcac
     8581 ggctacacgc gcctgttcga gaacatgctc gaccacccga acatcaaggt catgctgaac
     8641 acggactacc gcgacatcga gcgcgtcgtc ccgttccgcg agatgatcta caccgggccg
     8701 gttgacgagt tcttcgactg ccggtacggg aagctcccct accgctcgct cgagttcaag
     8761 cacgagacgc tcgaagagga agtgcaccag ccggcccccg tcatcaacta cccgaacgac
     8821 tacctctaca cgcgcgtcac cgagttcaag tacctgacgg gccagcggca cccgaagacc
     8881 gcgattgttt acgagttccc gcgcggcgag ggcgacccct actaccccgt gccgcagccc
     8941 gcgaacgcgg agctttacca gaagtacaag tccctggccg acgcgacgcc gaacgtgcat
     9001 ttcgtcgggc ggctcgcgac ctacaagtac tacaacatgg atcaggtggt tgcgcaggcg
     9061 ctcacggtct tcaagaagat cgcggggcgc taaggcaagg cgcacgccgg acagggggga
     9121 acgccggatg agcctcaacc ttcagggcgg cccggcgccg gagctgtggg cgggcttcga
     9181 gtgcacggtc aaccgcgtgg gcgaccgcta cttcgaccaa ctcgaacgct ccggccacgc
     9241 gcgccgcgcc gaagacctcg acctcctcgc gtggatgggc gcccgcgccg tcagataccc
     9301 cgtgctttgg gagcggacgg cgcccgaggg cttgagcgct gccgactggc gctgggccga
     9361 cgggcggctc gcgcgcctgc gcgagcttgg cgtgcgcccc atcgtcggcc tcgtgcacca
     9421 cggtagcggc cctcgctaca cgggcctgct cgacccctcg ttccccgaga agctcgccga
     9481 gtacgcgcgc gccgtcgccg agcgctaccc gtgggtcgaa gactacacgc ccgtcaacga
     9541 gccccttacg accgcgcgct tctgcggcct ctacggccac tggcacccgc acggccgcga
     9601 cgccgggacg ttcgcgcgct gtctggtcgc ggagcttcgc ggcacagtgc tagcgatgcg
     9661 cgcggtgcgt ttagtgaacc cttcggcgcg gctcgtgcag acggacgacc tggggaagac
     9721 tcacagcacg ccgctcctca ggtaccaggc cgacttcgag aacgagcggc gctggctgac
     9781 cttcgacttg ctcgcggggc gcgtcacgcg cgagcacccg gtgcgcggct acctgctcca
     9841 ggccggcgtc gcggagagcg aactcgactg gttctgtgag aacgcatgcc cgcccgacat
     9901 cgtcggcatc aaccactacc tcacgagcga gcgcttcctc gacgagcggc tggcgcgcta
     9961 cccggccagc acgcacggcg ggaacggccg gcacaggtac gccgacgttg aggccgtgcg
    10021 cgtctgcgcc gagggcgcgg ccgggcctcg cgttctgctc cgcgaggcct gggagcggtt
    10081 tggcttgccg gtggcggtca cggaagtaca tctgggctgc acgcgcgagg agcagttgcg
    10141 ctggctcgaa gaggtatggt cggccgcctg ctcgctccgc gccgacggcg ccgacgtgcg
    10201 ggccgtgacg gcctgggcgc tgctcggctc tttcgactgg gacagcctcg tgacgcgaga
    10261 ggccggaagc tacgagcccg gcgcgtttga cctgcgcgcg cctcggcagc gcccgacggc
    10321 agtcgcgaag aggctgaagg aattcgcggc cgggcgccaa gagtgtcacc cgtcggccga
    10381 gtcgcctggc tggtggcgca ggctcgaccg cctcatctac ccggcggtcg agaggcgcgc
    10441 gggggcgcgt ttgagcgcgg gaggtgaatg ggtgaagggg ggcgggcccg cgcggccgat
    10501 tctgattacg ggcgcgacgg ggacgctggg ccgcgcgttc gcgcgcctgt gctccgcgcg
    10561 cgggctctcg cacaggctca cgagccgcgt cgagatggac atagcctgcg cggagtcggt
    10621 cgcgggcgtg ctggagcaag agaagccttg ggcggtcgtc aacaccgccg gctacgtgcg
    10681 cgtggacgac gcggagcgtg agccccatct ttgcttccgc gagaacactg cgggcgccga
    10741 gacgctcgcg cgcgagtgcg cgcgccgcgg cgtgcaactg ctcaccttct cgtccgacct
    10801 agtcttcggc ggagagaatc gcacggggcc ttacgtcgag tcggacgaga cggcgcccct
    10861 gaacgtttac ggccggagca aagccgaggc cgagcggctc gtgctcgcgg cgctgccttc
    10921 ggctttggtc gtgaggacga gcgccttctt cgggccgtgg gacgagcaca acttcgtcac
    10981 cgcagccctg cgcgcgctcg cggcgggcga ggagttcgtc gccgcctcgg actacgtagt
    11041 ctcgccgacc tacgtgcctg accttgtgaa cgcgtgcctc gacctgctca ttgacggcga
    11101 ggccggcgtc ttgcacctgg cgagcacggg cgcaatcact tgggcggagt tcgcgcgacg
    11161 cgcggccgag gtggcggggc tcgacgccgc gctcgtcgtg gggcgccccg tcgcctcgct
    11221 cgggctcgcg gccccgcgcc cgacttacac cgcgctcgcg agcgagcggg gctcgctgct
    11281 acgcccgctc gaagcggccc tcgcggcctt cgcggccgag cgcgcgcccg cttcgcgcga
    11341 ggcgccgacg cggggcaggc cgcgccgccg ggcctaaaag cgcgcggcat ggggtttgag
    11401 taagccttct tcagactaac ttgcgacgag ccgttttcgg acaggccgcg gcttgcccgc
    11461 gcccgcctgt gcccggaaat cggttcccct tttattgaag aggagacgag agatggcatc
    11521 aacagagagt tcacttacga acgacgtgca ggcggcgagc ctgaccggcg ggggcggcac
    11581 aggcacgcag actagcggcg acggcggcgt cacgatgccg aatgtggggc agaccgagcg
    11641 ctgggtttcg acgataggcg gcggcgcgct ggcgctctac ggcataactc gtgggagcct
    11701 gggcggcata gcgctcgcgc tcgtgggcgc ggccctcata cagcgcggct acacgggcca
    11761 ctgcgccctc tacgagtcaa tcggctacag ctcgacgggc gacaagggcc ttcgcaacag
    11821 cgagaacgtg agcgtccccg gcgagcgcgg catcaagctc gagaagagcg tgaccgtgaa
    11881 ccgccctgcg gcagagctct acagcttctg gcgcaacttc gagaacctgc cgcgcttcat
    11941 gaaccacctc gaggccgtgc acgtgacggg tgccggccgc tcgcactggg tggcgaaggc
    12001 gccggccggc accacggtcg agtgggacgc cgaggtctat aacgagaagg agaacgagct
    12061 gatagcgtgg cgcacgctcg aaggcgcgga cgttgccagc gccggctcag tccactttga
    12121 gcctgcacag ggaggcgccg cgacgaccgt gcgcgtcgtc ctcaagtacg acccgccggg
    12181 cggcgctgtc ggcgcggccg tcgcgcggct gttcggcgag aaccccgagc aacagataga
    12241 cgaagacctc cgccgcttca agcagataat ggagggcgcg cagagcgccg gcagcgaggc
    12301 ttcgggccgc ggcgcctctg cctgaaacac gtaagagccg gctgcgggaa gtcggacgaa
    12361 acaggaaacg cggaggggag ggctcacaag tccctcccct ccgcgcttcc tgtttgagag
    12421 cggcgccgac gctacttctt gtcgccggcc cgaatcaact gttcgagggc ggcgaggcgc
    12481 tgctctagcg tgttgacctt ctcgcggagc tgctcgacct cttctgtctt ctgctgaagc
    12541 tcggccgtgc gctcgtcgag cgccttgatg gcggcgaagc tgacgccagc gatgtcgagc
    12601 acgccgatgg acttctcgtc cgtgccgagc ttgaaggcgg cgtggaagtc ctcggccatc
    12661 gggccgaggt ggcgaacctg ctgcccttcg gtgatgtagt tccacgacga aacgggaacc
    12721 ttacgcatgc gcgagaggat gtcctcgccg ctcacggcca tgaagttctc cttcgtcgtg
    12781 cggctcgaag tgcagttaaa cacgccgctc cctgcgggca ggttgcagcc cgtcgtgccg
    12841 ccgaggttcg tgcggaagcg gaagccgccc gtggcgcgcg ccgcgaactc gttgttggcc
    12901 gtgttgcgga acgtgtcggc cgaggccgtg gcggagccgt ccgaccagat gaaggtgccg
    12961 atgaagccgt tgttcgaggc gaacttgccc agcgccgtcg tgtgatcctg gtcggccgtc
    13021 acgttgtagc ctatggcgac ggccgcgagg ccgcggatgt tgaaggtgtc ggggtcgcac
    13081 ttgccgttaa tgagcggccc gcccgactgc gccttgttgc cgaaggcgac gccgtaggtg
    13141 tcgcacacgc ggttgcccgc gcccgccgag aagcccgcgg cgcccttcac ctcgttgccg
    13201 ctgccgaatg cgatgctgga agtcgagcgc gcgaagttcg tgtcgccgaa cgcgaaggcg
    13261 tagaggccct cggcggtcga gttcgagccg cccgcccagg agaagaagcc cacggtcgcg
    13321 tcgtcccact cgttgtcggc gtagccggag cggaaggcgc ccttgtacga atcccacgaa
    13381 gtgcggtagc ccttgccctg catcggcgag acgcctatgc cgaggttgcc ggtggcgacg
    13441 aagctgccgt tctggaagac cttgaaccac gccggggtgt ggccgccggg gccggagcag
    13501 caggtcgcgc cgccgcgcag gttgatcatc ggcgccgtgc cgttggcgtc gcccacggag
    13561 agctgctcgg cgccggggac gaacttgacg aagttggcgt caacgtaagc cttgttggcg
    13621 gcgtcgcccg cgcttacggg gttgccgacg ttcgtgatct gcgagttgtt gacggagatg
    13681 ccgagctgga aggtgttagc ggccgtccag ttgttcgccg cgttcgtctt tgccacggcc
    13741 gccgcgagct tcgacgcatt gattttaccc gtcgtggtgg cttcgttaat cttagcgacg
    13801 atgtcgttgc cggtcggcga ctcgccgccg cccgtcgggg ccgatgtcag gcgcgagccg
    13861 tcggcgaagg tgatgccgct gccggcgccg gagagcttca ggttgccggc gacttcgagg
    13921 cgctcggtcg gcgtcggcgt gcctatgccg acgttgccga aggccgtcac gcgcatcctc
    13981 tcggagacga ggctgttcga gggcgcggtg cggacgatga aggcggcctg gtcgtgcgcg
    14041 cccgagtcga agaaggcttg gccggggaag taggggctct ggttgccgaa gaactgtagg
    14101 gcggcgccct gcggcacgtt cgtcatcgag ggcatggcgt agaagcgcag cccgcccttg
    14161 ttgtcggaga ggtgtatgtc gcggccgtag gtctcgacgt tggcgggcgc gctgaagaca
    14221 atcgcctcgt caacgttcat cgtcgcggcg tcggccacgc ccgtctgcgc tactacctgg
    14281 ccggactcga ccttgaccga cccctcggag gttcccacct tgccggagtc gcccttgcgc
    14341 gaaatctgta ggcggtagga gccgtccgcg acctgccgcc ccgaggcgtc ttcgagcgac
    14401 cagttcactt cgcccgcctg aaagcccgag tcgaagacca gctcgcccga cgggccgtaa
    14461 acttccagcc gcgtctggcc cgccttcgcc gccggcagcc tgacggcgcc gcgggcgggc
    14521 ttggcagccg aggccagcgc gccctgcgtc tcggcctcgc cctgcgccag cgcgggcgcc
    14581 gaaagggcgg ttaaaagtgc catcgcgaag ataaggcggg taaagttacg catgaatact
    14641 aactccttga ataatcagtc gggtttgatt ttcggcgcgg cgtcgggctt cgttcagtcc
    14701 cgtaaacggc cctactggcg cgcgctcgat aaatgctgtc accgtcaaac gcgtataagg
    14761 cgcgcggatt gaatcggcgg gcgccgggaa tttatcccgc acagtggcgc aggcgatgaa
    14821 aaagccagat tttcgccaat caatccccac ccgacgcgcg ctagacttcc gccgttctct
    14881 taaacttcgg ctggcgagga ggagcagaag acagatggct gacgaagagc ggagtgaaga
    14941 gcatggcggc ggcaccggcg ggcagggcgg cgaggcgacg ggcgaccccg gccgcacgcc
    15001 cggcaaggcc gagggcggcg aagagaccgt cgaggaagac ctgcggcaga agggggcaga
    15061 gggctagggc gagaccgcgg ccctcggtct taaccacaca gtcacggaga gcacggggac
    15121 ggcgcggacg gtagaactcc tccgtgccgt ccccgtgctc tctgtgttaa agtctccccc
    15181 tcccgcagct cgcccaaccg ggaacaactc aagcaggccc gatggtaaaa ctcaaaatcc
    15241 tcgtcgtcct cctgttcacg gccttctccg tcgcgctcct gttcacggac aacccggcgc
    15301 acgccttctc ggcgaggccg cccgcgggcc acacgcgcgc gccgggcgag ttcgagtgct
    15361 ccgagtgcca cgtcgtcgaa gaccccggca ccgggaaact caaactctcc gtgcctcagt
    15421 cctacgtgcc gggccagagc tacgacgtga gcgtcacgca cgagaacgcc gacccgaccc
    15481 gcgtgcggtg ggggttccag ctcacggccc tcgaccagag cgacgctcgc gcgggcacgc
    15541 tcgcgcccct cgacgacaag acgcaggccg ttgacgggca ggggcctttc ccgtcgcgcc
    15601 agtacatcga gcacacctcg gccggcacct tctcgggaca gcagaacggg gcgagctggg
    15661 cttttaagtg gactgcgccc gcggaggacg ttgggcctgt aaccttctac gtcgccggca
    15721 accaggcgaa tggcgacggc agcagctccg gcgacaacat ctacttcacc ttcgccgtct
    15781 cgcagccagc ccccgccgcg cccgacttct cgctctccgt cacgccctct tcgcgcacac
    15841 tcccgcaggg cggcagcacc acttacgacc tgaccgtcac gccgctcaac ggcttcacgg
    15901 gggaggtcac gctcggcgtc tcgggcgcgc cagcgcagtc cgtcgccagc ttcttccctg
    15961 agcccgtcga gataaccgac gcgacgccca agacttcgca gttcagcata agcccgcagt
    16021 tcgccgcgcc cggcagctac acgctcacct tcacggccgc gagcggcgcg ctctcgcact
    16081 cggcgcaggc cgccttcaac gtcatcaagg cagacgacgc agacgtgtcc atcacgcagt
    16141 ccgtctcccc caacccggcg caggccgggg cggacgttaa gttcacctac accttcacga
    16201 acaacgggcc ggggcaggcc acctcgcccc tggtcaccat caagttcccg cgcgagcacg
    16261 gcggcttcgc gaaaggctca ggcacctgca cgctcatacc cggcgacaca gaggtcacgt
    16321 acttctgtct tctcgcgaac cacccggccg ggagcagcga gacgattgac ttcacgctgc
    16381 ggccgacgca gcccggcccg ttccagataa cggcgagcgc taaggccaac gagaacgacc
    16441 ccgaccagtc gaacaacacg gtctcggcgg cgattcccgt cgcgccgctc accacggggc
    16501 cgcggatgac ggtcgccggc ctcggcgtcc gcaccgtcgt gggcgggcta gacgcgccga
    16561 cctctatggc cttcataggc ccggacgagt tcttcgtgct tgaaaagaac acgggccgcg
    16621 tcattcatgt cctaaacggc cagaagaagg gcgtcgtgct cgacctcccc gtaaacagcg
    16681 cctcggagcg cggcctcctc ggcatagcgg tcagcccatc ctttggctcc cacgacagca
    16741 ggttcgtcta tctcttctgg acggaaagct ctacgagcgg ggacacgacc ggcgtcgggc
    16801 aggtgtctct gctcggcaac cgcgttgacc gcttcgtctg ggacggggag aagctcacgc
    16861 aggacatcaa catcatacgc atgcgcgcgc tccagacgga cgaggggcag ccgccgcgcg
    16921 gcaaccacaa cggcggcgtc ctgcggttcg ggggtgacgg catgctctac atcctcatcg
    16981 gcgacgtggg ccgccgcggg ctccttcaga acatcaggag cggagccccc gtccccgacg
    17041 accagttcgg cggccccgag ccggacgacg agcacctctc cggcgttata ctccgcctaa
    17101 acgaagacgg cactacgccc acagacaacc cattcttcga cgcgcagacg ggcctcacgg
    17161 gcgaggccgc cgagaacgtc aagaaaatct acgcctacgg catacgcaac agcttcggca
    17221 tggacttcga tcccgcgagc ggcggcctct gggcgcagga gaacggcgac gattcgttcg
    17281 acgagataaa ctccctcggc cgcggctcca acagcggctg ggcgcaactc atggggcctt
    17341 cgtcgcgcgt ggccgagttc aaggagattg agagcacgaa gtacaacttc acgcttgagc
    17401 agaaccgctg gccgccctcc gcaatcgcct cgacgcccgc cgacgcgctc gcgcgcctct
    17461 accaactgcc cggctcgcac taccgcgagc ccgagttcag ttggaagtat tcggtcgcgc
    17521 cctcggccgt cggcttcgtc cgcggcgaag cgctcggcgc gcgctaccgc aaccgcctcc
    17581 tcgtcggcgc agccagcacc acgctcctgg gcggctacct catgagcttc gacctcaacg
    17641 acagccgcga gaacttcacc ttcgcagacc cgcgcctagc cgacggcgtc gccgacaact
    17701 ccgacaagtt cgacctgacc gagagcgaga gcctcgtcat cgggcgcgac ttcggcatca
    17761 cgaccgacat caaaaatggg caggacggca acttgtcccc catcgtctat gtcgtctcgc
    17821 acacgaacgg cgcggtttac gaaatcttcc ccaagcccgc cctcttcgtc gcccggctcg
    17881 acggcgcgca ggagacgccg ccgaacagtt cacaggcgcg cggcctcgcc acactgctgc
    17941 tcaaccccga cgggctgacg ggccgcgtct cgctcaggtt ccaaaacctc tcctcggcgc
    18001 agacgacggc gcgcctgcac ggccctgccc ccgccgggca gtcggggccg cccgtcctag
    18061 acctgcccgc cggcaacttc acggacttct caatcacgct cacgccgcag caggcgagcg
    18121 acctccgggc cgggcttctc tacataagtg tccgcagcca gaacttcccg gcgggcgaga
    18181 tacgcgggca gttcggggcg gtgaacgcct cttcggccgt agaagtcgaa gcgggcgacg
    18241 ggagcgtcgt agagggcgcg cgcacgaaga ccgtgacggt cgtgcgcctc ggcgacacga
    18301 cgcagcccgg cgaggtcgag tacgagacgc aggacggcac ggcctcggag cgcacagact
    18361 acacgaccgc gcgcggcacg ctccgcttcg ccgccggcga gacctcgaag acgttcgacg
    18421 tgctcatcac cgacgacgcc ttccaggaga cggacgagac ctttggcgtc gctctctcga
    18481 ccgcggccgg cgacgtgagc gcgcc
//
LOCUS       DASPKR010000764         3076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_646066, whole genome shotgun sequence.
ACCESSION   DASPKR010000764 DASPKR010000000
VERSION     DASPKR010000764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3076)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3076
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_646066"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..556
                     /locus_tag="VD968_19980"
     CDS             <1..556
                     /locus_tag="VD968_19980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16729.1"
                     /translation="HPAYNPYSYHRGSVWPVEHGTFAVAFARYGYQRVVELIAQAQFE
                     AAALFDFYRLPELFSGHQRDEDHPFPAHYPQANSPQAWSASAVFCLLQAMLGLYPYAP
                     LNMLLVDPHMPEWLPEITLNNLRVGDAVVTIRFYRTKSGKGDYEVLDKRGPLHVLRQP
                     SPWSLTAGFAERLKDVLTSLLPGK"
     gene            599..1621
                     /locus_tag="VD968_19985"
     CDS             599..1621
                     /locus_tag="VD968_19985"
                     /inference="COORDINATES: protein motif:HMM:NF005495.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYE16730.1"
                     /translation="MEQLSKPEVVVITGASAGVGRAVARAFAREGAHIGLLARGRDGL
                     EGARRDVEELGGRALVVQADVADAEAVERAAEAVENEFGPIGIWINNAMVSVFAPVKE
                     MKPEEYRRVTEVTYLGYVYGTLAALKRMLPRDRGVIVQVGSALAYRGIPLQSAYCAAK
                     HAIQGFHDSLRSELIHDRSNVRVTMVQLPAMNTPQFGWVKSRLPQKPQPVPPIYQPEV
                     GAEAVLFAARNDRREMYVGYPTVEAIVGDKIAPGFADKYLAKYVYAAQQTEEPVESDR
                     RDNLWESVPGDHGAHGTFDDRASASSPQLWASMNRNWLAIAGAGLAGLAVGLFISRAS
                     EKAIER"
     gene            1657..2490
                     /locus_tag="VD968_19990"
     CDS             1657..2490
                     /locus_tag="VD968_19990"
                     /inference="COORDINATES: protein motif:HMM:NF014414.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYE16731.1"
                     /translation="MTEEHFNSDAVREHYDRLSVFYRALWGEHIHHGFWEDGESPARA
                     QVKLVERLAARAGIQRGSRVLDVGCGIGGPALWLARNLSCFVLGLTISPVQARMAAER
                     ARVEGLDNLSRFEVSDANRLQFEAESFDVVWVIECSEHLVDKARFIESCALVLKPGGV
                     LALCAWLRAEPHARPEHARLVAEVCRGMLCPQLASMQDYTGWMSASGFTRIEAEDVTR
                     HVEETWARCAALASRPEIKLPLRAADERTRSFVETFPAIRRAYAEGAMAYGMFAARKA
                     E"
     gene            2490..>3076
                     /locus_tag="VD968_19995"
     CDS             2490..>3076
                     /locus_tag="VD968_19995"
                     /inference="COORDINATES: protein motif:HMM:NF024842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HYE16732.1"
                     /translation="MAEEDGKRNLTAPGIHGERVPMRDLSREEVDFCVVGAGAGGGVI
                     GAKLAEAGFSVVILDAGPHWNPVKDFVSDEVASRKLFWNDERITGGADPVELGSNNSG
                     RGVGGSTVHYSMVAMRAHPEDFRRRTLEGEIEGADVRDWPLTFEELGPYYEEVEEALQ
                     IAGPTFYPWGKRRRRYPQREHELNASAQVLVRGCT"
BASE COUNT          548 a          962 c         1055 g          511 t
ORIGIN      
        1 gcacccggcc tacaaccctt acagctacca ccgcggctcc gtctggccgg tcgagcacgg
       61 gacgttcgcc gtcgcgttcg cgcgctacgg ctaccaacgc gtcgtagagt tgatcgcgca
      121 agcgcagttc gaggccgccg ccctcttcga cttctaccgc ctgcccgaac tcttcagcgg
      181 ccaccagcgc gacgaagacc acccgttccc tgcgcactat ccgcaggcca actcgccaca
      241 ggcatggtcg gcctccgccg tcttctgtct gctgcaagcg atgctcggcc tctaccctta
      301 cgccccactt aacatgctct tggttgaccc gcacatgccg gagtggttac ctgagattac
      361 actgaacaat ctgcgcgtgg gcgacgccgt ggtgacgatc cgcttctacc gaaccaagag
      421 cggcaagggc gattacgaag tgctcgacaa gcgcgggccg cttcacgtcc tccgccagcc
      481 gagcccgtgg tctctgaccg ccggcttcgc cgagcgtcta aaggatgtgc tgacgagcct
      541 gctgccggga aaatgatctg aaggagagcg agtatagaaa tcagggagga gccatcgcgt
      601 ggagcaattg agtaagcctg aagtcgtcgt catcacgggc gcgtccgccg gcgtggggcg
      661 cgccgtggcg cgcgcgttcg cacgcgaggg cgcgcacatc ggcctgctgg cgcgtgggcg
      721 cgacgggctg gaaggtgcgc gccgcgatgt tgaagagttg ggaggccgcg cgctcgtcgt
      781 gcaggcggac gtggctgacg cggaggcggt cgagcgtgcg gcggaagccg tcgaaaacga
      841 gttcggcccc atcggcattt ggatcaacaa cgcgatggtg tcggtcttcg cgcctgtgaa
      901 ggagatgaag ccggaggagt acaggcgcgt gacggaggta acgtacctcg gctacgtgta
      961 cggcacactc gccgccttga agcgaatgct gccgcgcgac cgcggagtga tcgtgcaggt
     1021 cgggtcggcg ctggcctacc ggggcatccc cttgcagtcc gcctactgcg ccgcgaagca
     1081 cgccatacag ggctttcatg attcgctacg gagtgagttg atccacgacc gttcgaacgt
     1141 gcgcgtgacg atggtacaac ttcccgcgat gaacacgccg cagttcggtt gggtcaagtc
     1201 gcgccttccg cagaagcctc agccggtgcc gcctatctac cagccggagg tcggcgcgga
     1261 ggctgtgctc ttcgccgcgc ggaatgaccg gcgcgagatg tacgtcggct atccgacggt
     1321 cgaggcgatt gtcggagaca aaatcgcgcc gggcttcgcg gacaagtacc ttgcgaaata
     1381 cgtctacgcc gcgcagcaga ccgaagagcc ggtcgaatcc gaccgcagag ataacttgtg
     1441 ggagtctgtg ccgggagacc acggcgcgca cggcacgttc gacgaccgcg caagcgcgtc
     1501 aagcccgcaa ctgtgggcca gcatgaaccg caactggctg gcgattgcag gggccggcct
     1561 cgccggtctg gcggtcggac tattcattag ccgcgcctcc gagaaagcta tcgagcggta
     1621 aaacagtgcg gcgggaggaa agaatttcaa acgggcatga ctgaagaaca cttcaactcg
     1681 gacgccgttc gagagcatta cgaccgcctc tcagtctttt accgggcgct gtggggtgag
     1741 cacatccacc acggcttctg ggaggatggc gagtcgcccg cacgcgcgca ggtgaagctc
     1801 gtcgagcgtc tcgccgcgcg cgcgggcata caacgcggta gccgcgtgct cgatgtcggc
     1861 tgcggcatcg gcggcccggc gctctggctg gcgcggaatc taagctgttt cgtcttgggt
     1921 ctcacgatta gccccgtgca ggcgcggatg gcggcggaga gggcgcgggt cgaaggcttg
     1981 gacaatctct cgcgcttcga ggtcagcgat gcgaaccggc ttcagtttga ggcggagtct
     2041 tttgacgtgg tgtgggtgat cgagtgcagc gagcacctcg tggacaaggc ccgcttcata
     2101 gagtcttgcg cgctcgtcct gaagccgggc ggcgtgctcg cgctctgcgc gtggctgaga
     2161 gcggaaccgc acgcccggcc cgagcacgcg cggctcgtcg cggaggtctg ccgcgggatg
     2221 ctctgcccgc agctcgcgag catgcaggac tacacgggct ggatgagcgc gagcggtttc
     2281 acaagaatcg aagccgaaga cgtcacgcgg catgtggaag agacttgggc gcgctgcgcc
     2341 gcactcgcca gccgcccgga gattaagcta ccgctgcgag cggctgacga acgcacgcgc
     2401 agcttcgtcg agacgttccc cgccatccgg cgtgcttacg ccgagggagc aatggcctac
     2461 ggcatgttcg ccgcgaggaa ggctgaatga tggcagagga ggacggcaaa cggaatctca
     2521 ccgcgcccgg catccacggc gagcgcgtcc cgatgcgcga cctctcgcgt gaggaggtgg
     2581 acttctgcgt cgtcggcgcg ggcgcgggcg gcggcgtcat cggcgcgaag ttggccgaag
     2641 ccggcttctc agtcgtgatc ctcgacgcgg ggccgcactg gaatcccgtg aaggatttcg
     2701 tctcggacga ggtggcttct cgcaagctct tctggaacga tgagcggatt acgggcggcg
     2761 ccgaccccgt cgaactcggc tcgaacaatt cgggccgcgg cgtcggcggg agcaccgtcc
     2821 actactcgat ggtggcgatg cgggcacacc cggaagactt ccgtcgtcgc acgctcgaag
     2881 gcgagataga aggcgcggac gtgagagact ggccgctcac cttcgaggag ttggggccct
     2941 actacgaaga ggtagaggag gcgctccaga ttgccggccc gactttctat ccgtggggca
     3001 agcgccgacg ccgttacccg cagcgcgagc acgagctgaa cgcctcggcc caagtcttag
     3061 tccgcggctg cacgca
//
LOCUS       DASPKR010000765         6887 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_387107, whole genome shotgun sequence.
ACCESSION   DASPKR010000765 DASPKR010000000
VERSION     DASPKR010000765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6887)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6887
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387107"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(151..792)
                     /locus_tag="VD968_20000"
     CDS             complement(151..792)
                     /locus_tag="VD968_20000"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HYE16733.1"
                     /translation="MLKTLRRTAAAAILLAAVLPAAARAQNHEYAPLLEQKLDYKDWT
                     FKSLKDGSDVNLRQLAKGKKLLMVVYFAPWCGNWKMEAPVIARLLEKYRQHGFDVVGV
                     SEYAAADDTRKYFESQGGAPYTVVVESEKGEDRDKTTHYAYRQACGDGRRWGSPFNVF
                     LEPAKLNAKGDVLTEKAWVVGGELIEADAERFIREKLGLAEQSSVEPCENKKP"
     gene            complement(817..2100)
                     /locus_tag="VD968_20005"
     CDS             complement(817..2100)
                     /locus_tag="VD968_20005"
                     /inference="COORDINATES: protein motif:HMM:NF014713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein/redoxin"
                     /protein_id="HYE16734.1"
                     /translation="MEGANVYTVLISFVGGLASFLSPCVLPLVPGYISLISGVSIDHL
                     KGEGASRSQARRAVILNSLAFNAGLSLIFLSLGAAAGLLGSAITSNRWVSLIGGIVII
                     VFGLHLIGILRISAFYRDTRKFSDEKPRGPLGSLVLGLAFAAGWTPCIGPILGGIIGL
                     AASSGGWQSGLALSAFYAAGLAVPFLLTGLGINQFLGFYTRFRRHLHKVEVFSGAMLI
                     VIGLMVATGTVTKISSFAASLPFNPEAWVERWSKGDGKTATAAPASAQLGSSGAAAAN
                     SNLPLLPDVEFKTLEGEPYRLSDLRGRVVVVNFWATWCGPCRGEIPEFNALQREHASR
                     GLTIVGVTSDPEDTPAKIRTFQKDIPQEYTVLLGSGEAAEPFNNGPGLPVTHIVDREG
                     RVRHKIFGPRDRAGFEALVRPLLEETAATTADARR"
     gene            complement(2182..2628)
                     /locus_tag="VD968_20010"
     CDS             complement(2182..2628)
                     /locus_tag="VD968_20010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16735.1"
                     /translation="MTRRRLTALPGLLLLASAAPLLAPSAARAQENGESPFAVAGVED
                     PREVERFLSGLKRAVADDDRARVADMVSFPLRTNLRGRAARVRGRREFLRNYRSIFTA
                     KVKRALAEEETGGLFANWRGVMVGDGEIWFRPSGRDGRLKIVTVNN"
     gene            complement(2644..3975)
                     /locus_tag="VD968_20015"
     CDS             complement(2644..3975)
                     /locus_tag="VD968_20015"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HYE16736.1"
                     /translation="MKISNGLAVIILLAAALGAPAFAQTAVAADGAVKAGDSPSSAAT
                     AKQLYEEASTYARRKFEEFEKNRLPFDRALEAKTYQEQRDMALRHATLLTERGPLRGT
                     DLYYAGLLYALAGRAEPALETLRRFLSEEAGAPADLRQQARVNVVQRAAQLDRADEAE
                     KFLAEYAASSPRTDADLHRMHTVLASLYTKKKDHARAASHARGAYAAALGILKDERIE
                     QRDRDAAVFAAGAFLANSLIRAGDRAAAVRLIQEMRGRAVAIPSARLYRQATGMLLEN
                     GERLSEPPAVEGLAAAAAPEIKVGEWIDQQPVNLAGLRGKVVLLDFWATWCGPCRYTI
                     PKLNALHAKYKDRGLVILGLTEYYGSGEGRSLSPPEELESLRRFKKRNQIEYGFGVSG
                     HEENGEAYGVTSLPTAVLIDRRGRVRFITVSASDEEARIMASMIEKLLAEQ"
     gene            complement(4005..5216)
                     /gene="thiO"
                     /locus_tag="VD968_20020"
     CDS             complement(4005..5216)
                     /gene="thiO"
                     /locus_tag="VD968_20020"
                     /EC_number="1.4.3.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR02352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016647 - oxidoreductase activity, acting
                     on the CH-NH group of donors, oxygen as acceptor [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine oxidase ThiO"
                     /protein_id="HYE16737.1"
                     /translation="MRSIEEFDGGAGVVVVGGGVAGLAAARELARRGMGVHVLESGRL
                     GAQATSAAGGMLAPQAEADRRDELFELLCASREAWPSFAEELREESGIDVELDRAGTL
                     YLALTEEDEREVGRRYEWQTREGLEVERLTAREARGIEPEVSPRVRAALRFPRDWQVE
                     NRLLVRALAESAARFGVRFSEGTAATSVRVIAGRAAGVETSRGFAPAGAVVLAAGAWA
                     SRVPLMVTERDTDEARAVEGAHPAVEPVRGQMLCFARPRESGAFVRHVVYSPRGYVVP
                     RRDGRLLAGSTTERAGFDCSVTPEGLSAVTSHAVEIAPRLASLTLADSWAGLRPRSED
                     GLPVLGESAACAGLFYATGYYRNGILLAPAAARIVADMVTGVATTLPPRALEAFSPAR
                     FGRTLAASRAE"
     gene            5354..6355
                     /locus_tag="VD968_20025"
     CDS             5354..6355
                     /locus_tag="VD968_20025"
                     /EC_number="1.1.1.41"
                     /inference="COORDINATES: protein motif:HMM:TIGR00175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005962 - mitochondrial isocitrate
                     dehydrogenase complex (NAD+) [Evidence IEA];
                     GO_component: GO:0045243 - cytosolic isocitrate
                     dehydrogenase complex (NAD+) [Evidence IEA];
                     GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0006102 - isocitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate dehydrogenase (NAD(+))"
                     /protein_id="HYE16738.1"
                     /translation="MSHTITLIPGDGIGPEVSAAAVRIIEASGVDVQWETHYAGAQAL
                     EKYGTTLPDDLLESIRRNRVALKGPITTPVGKGFTSVNVGLRKALDLYANLRPVRALP
                     NVPARYPELDLVVVRENTESLYAGLEHVVVPGVVESLKIITEKASTRIARFAFEYARR
                     EGRKKVTCVHKANIMKLSDGLFLECFRNMSAGYPEVAAEDKIVDNACMQLVMRPEQFD
                     IMLLENLYGDIVSDLCAGLIGGLGLVPGANIGELGAVFEAVHGSAPDIAGQGVANPTA
                     LLQSGILMLRYLGEREAAERVERAMLKVYEEGKVRTRDVGGTSKTDEFASAVIAAMQ"
     gene            6592..>6887
                     /locus_tag="VD968_20030"
     CDS             6592..>6887
                     /locus_tag="VD968_20030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16739.1"
                     /translation="MLYPRSGLRRQTKRASVALAFTLALTVISALPPPRAARAQEGSA
                     PIPVIAPGSAFRQTNLVADWPGVARVQDPLLVNPWGISMTTTSPFWVANAGTSTS"
BASE COUNT         1101 a         2364 c         2357 g         1065 t
ORIGIN      
        1 aggacataat agcaggcgcg cgcgcggcgc ggctaacgcg ctcgcggaaa gaatttcacg
       61 cggagtgcga aggcggggcg ggagaaactg cctgagaggt ttcggctgcc tgtcttgagt
      121 aaggttttga cgcgcgcgcg caccggcacg ctacggcttc ttgttctcgc agggctcgac
      181 ggagctttgc tcggcgaggc cgagcttctc gcgtatgaag cgctcggcgt cggcctcgat
      241 gagctcgccg ccgacgaccc atgccttctc tgtgagcacg tcgcccttcg cgttgagctt
      301 cgccggctcg aggaagacgt tgaagggcga gccccatcgg cggccgtcgc cgcacgcctg
      361 cctgtaggcg tagtgcgtcg tcttgtcgcg gtcttcgccc ttctccgact ccacgacgac
      421 cgtgtagggc gcgccgccct gcgactcgaa gtacttgcgc gtgtcgtcgg ccgcggcgta
      481 ctcgctcacc ccgaccacgt cgaagccgtg ctgcctgtac ttctcaagga gccttgcgat
      541 caccggcgcc tccatcttcc agttgccgca ccaaggcgcg aaatagacga ccatcagaag
      601 cttcttgccc ttcgcgagct ggcgcaggtt cacgtccgag ccgtccttca ggctcttgaa
      661 cgtccagtcc ttgtagtcga gcttctgctc caggagcggc gcgtactcgt ggttctgcgc
      721 ccgcgccgcc gccggcagga cggcggccag cagaatcgcg gccgccgcgg tgcgtctgag
      781 agtcttgagc atggcttacc tcacctctta cggcgctcaa cgacgggcgt cggccgtcgt
      841 ggcggccgtc tcttctagca gcgggcgcac gagcgcctcg aagccggctc ggtcgcgcgg
      901 gccgaagatt ttgtggcgga ctcggccctc gcggtcaact atgtgcgtga cgggcaggcc
      961 cggcccgttg ttgaagggct cggccgcttc gccggagccg aggagcacgg tgtactcctg
     1021 cgggatgtcc ttctggaacg tgcgaatctt tgcgggcgtg tcctcggggt cggaggtgac
     1081 gccgacgatt gtcagcccgc gcgaagcgtg ctcgcgctgc aaggcgttga actcgggtat
     1141 ctcgccgcgg caggggccgc accacgtcgc ccagaagttg acgacgacga cgcgcccgcg
     1201 caggtcgctc aggcggtagg gctcgccctc gagcgtcttg aactcaacgt ccggcagcaa
     1261 gggcaggtta gagttcgcgg ccgcggcgcc cgacgagccg agctgcgcgg aggcgggcgc
     1321 ggccgtcgcg gtcttgccgt cgcccttaga ccagcgctcg acccacgcct ccgggttgaa
     1381 ggggaggctc gcggcgaaac tcgaaatctt cgtcaccgtg cctgtcgcaa ccatcaggcc
     1441 gatgactatg agcatggcgc ccgagaagac ttcgaccttg tgcaggtgac ggcggaagcg
     1501 cgtgtagaag ccgaggaact ggttgatgcc gaggcccgtg agcagaaagg ggacggcgag
     1561 gcccgcggcg tagaaggccg agagcgccag gccgctctgc cagccgccgc tcgaagcggc
     1621 gaggccgatg atgccgccga gaatggggcc gatgcacggc gtccagccgg cggcgaaggc
     1681 gaggccgagg acgagcgagc cgagcggccc gcgcggcttc tcgtcggaga acttgcgcgt
     1741 gtcgcggtag aaggcgctta tcctgagtat gcctatcagg tgcaggccga agacgatgat
     1801 gactatgccg ccgatgaggc tcacccaccg gttgctcgtt atcgccgagc cgagcagccc
     1861 cgcggccgcc cccaggctca ggaatatgag cgagaggccg gcgttgaagg cgagcgagtt
     1921 tagtatgacg gcgcgccgcg cctgagagcg cgaggcgccc tcgcccttga ggtggtcaat
     1981 gctcacgccc gagatgaggg agatgtagcc ggggactagc ggcagcacac acggcgacag
     2041 gaacgacgcc aggccgccga cgaacgagat gagaacggtg taaacgtttg cgccttccat
     2101 aacgcctgag agcttacaac aaacggggcc gaatttccgc ccgcggcgcg cggttcgcgc
     2161 gtaaagaaaa ggtaaaaagt ttcagttgtt gacggtcacg atctttagcc ggccgtcgcg
     2221 gcccgagggg cggaaccaga tttcgccgtc gcccaccatc acgccccgcc agttggcgaa
     2281 gagcccgccc gtctcctctt cggcgagcgc ccgcttcacc ttcgcagtga agatgcttct
     2341 gtagttcctc agaaactccc gccggccgcg gacgcgcgcg gcgcgcccgc gcaggttcgt
     2401 gcgcaggggg aagctgacca tgtcggcgac gcgggcgcgg tcgtcgtcgg cgacggcccg
     2461 cttcaagccc gacaggaagc gctcgacctc gcgcgggtct tcgacgcccg cgactgcgaa
     2521 ggggctctcg ccgttctctt gcgcccgcgc ggccgagggg gcgaggaggg gcgcggcgga
     2581 ggccagaagt agtaaccccg gcagcgccgt caaacgtctt cgcgtcatcc cgcctcccct
     2641 ccgctactgc tcggccagca gcttctctat catcgaggcc atgatgcgcg cctcctcgtc
     2701 cgaggcgctg acggtgatga agcgcacgcg cccccggcgg tcaatcagca cagcggtcgg
     2761 cagagaggtg acgccgtaag cctcgccgtt ctcctcgtgg ccggagacgc cgaagccgta
     2821 ctcgatctgg ttgcgcttct tgaagcggcg cagggactca agctcctcgg gcggcgagag
     2881 cgagcggccc tcgccgctgc cgtaatactc cgtgagcccg aggatgacga ggccgcggtc
     2941 tttgtacttc gcgtgcaggg cgttcagctt cggtatcgtg tagcggcacg ggccgcacca
     3001 cgtcgcccag aagtcgagga gcacgacctt gccgcgcagc ccggcgaggt tgacgggctg
     3061 ctggtcaatc cactcgccca cctttatctc gggcgcggcg gccgccgcca ggccttcgac
     3121 ggccggcggc tcgctcagcc gctcgccgtt ctcgagcagc atccccgtgg cctgcctgta
     3181 gagtcgcgcc gaagggattg cgacggcgcg gccgcgcatc tcctgtatga ggcggactgc
     3241 cgccgcgcgg tcgccggcgc ggatgaggga gttcgcgagg aacgccccgg ccgcgaagac
     3301 ggccgcgtcg cggtcgcgct gctcgatccg ctcgtctttc aaaatcccga gcgcagccgc
     3361 gtatgcccct cgggcgtgcg aggcggcgcg cgcgtgatcc ttcttcttcg tgtagagcga
     3421 ggcgaggacg gtgtgcatgc ggtggaggtc tgcgtcggtg cgcggcgagg aggcggcgta
     3481 ctcggcgagg aacttctcgg cctcgtcggc gcggtctaac tgcgcggcgc gctgcacgac
     3541 gttgacgcgc gcctgctggc ggaggtctgc cggggcgccc gcctcttccg agaggaagcg
     3601 gcgtaaggtt tcgagcgcgg gctcggcgcg gcccgcgagc gcgtagagca gccccgcgta
     3661 gtaaaggtct gtgccgcgca aggggccgcg ctcagtaaga agcgtcgcgt ggcgcagcgc
     3721 catgtcgcgc tgctcctgat aggtcttcgc ttcgagcgcg cggtcgaagg gcaggcggtt
     3781 cttctcgaac tcctcgaact tgcgccgggc gtaagtggag gcctcctcgt agagctgctt
     3841 cgccgtcgcg gccgacgacg gcgagtcgcc cgccttgacg gcgccgtcgg ccgcgacggc
     3901 cgtctgcgcg aaggccgggg cgccgagcgc ggcggccaga aggatgatga cggccaggcc
     3961 gtttgaaatc ttcataaagt tatcaggcac ggctctcaag cgtctcactc cgcgcgcgag
     4021 gcggcgagcg tgcggccgaa gcgcgcgggc gagaatgctt cgagggctcg gggcggcaga
     4081 gtggttgcca cgcccgtcac catgtcggcg actatgcgcg cggcggcggg cgcgagcagt
     4141 atgccgttgc ggtagtagcc ggtcgcgtag aagagcccgg cgcaggcggc cgactcgccc
     4201 agcacgggaa ggccgtcctc cgagcgcggc cgcaggcccg cccacgagtc ggccagagtc
     4261 agagaggcga gccgcggggc tatctctacg gcgtgggagg tgacggcgct taagccctcc
     4321 ggcgtgaccg agcagtcgaa gccggcgcgc tccgtggtcg agccggccag cagtcggccg
     4381 tccctgcgcg ggacgacgta gccgcgcggg ctatagacga cgtggcgcac gaaggcgccc
     4441 gactctcgcg gccgcgcgaa gcagagcatc tgcccgcgca cgggctcgac cgcggggtgc
     4501 gcgccctcga ccgcgcgcgc ctcgtccgtg tcacgctccg tgaccataag aggcacacgc
     4561 gaggcccatg cgcccgcagc caagacgact gcgccggccg gcgcgaagcc gcgcgaagtc
     4621 tccacgcccg cggcgcggcc cgctatgacg cgcacgctcg tcgccgcagt cccttccgag
     4681 aagcgcacgc cgaagcgcgc ggccgactcg gctagcgcgc gcacgagcag ccggttctcg
     4741 acctgccagt cgcgcgggaa tcgcaaggcc gcgcgcacgc gcggcgagac ttcgggctca
     4801 atccctctgg cctcgcgcgc cgtgagccgc tcgacttcga gcccctcgcg cgtctgccac
     4861 tcgtagcgcc gcccgacctc gcgctcgtcc tcctccgtca gcgccaggta gagcgtcccc
     4921 gcccggtcaa gctccacgtc tatccccgac tcttcgcgca gctcttcggc gaaggacggc
     4981 cacgcctcgc ggctcgcgca gagcagttcg aacagctcgt cgcggcggtc ggcctcagcc
     5041 tgcggcgcga gcatcccgcc cgcggccgac gtggcctgcg cgccgagccg ccccgactcc
     5101 aggacgtgaa cgcccatgcc gcgccgcgca agctcgcgcg cagccgcaag ccccgccacg
     5161 ccgccgccca cgacgacgac gcccgcgccc ccatcgaact cttcaatgct tctcatttac
     5221 ggagacttgc tggtatgatg caaaaaaagc aatcagcaat cagcggtcag cattcagctc
     5281 cgggcgggag ccgggagtct cgtcgtttgg ccgccgcagg ctgattgctg aaagctgaaa
     5341 gctggttgct gccatgtctc atactatcac actcattccg ggcgacggca tcgggccgga
     5401 agtctccgcg gcggcggtgc gcatcatcga ggcttcgggc gtggacgtgc agtgggagac
     5461 gcactacgcg ggcgcgcagg ctttggagaa gtacgggacg acgctgcccg acgacctgct
     5521 cgaatccatc aggcgcaaca gggtcgcgct caaaggcccg ataacgacgc cggtgggcaa
     5581 gggcttcacc tccgtcaacg tcggcttgcg aaaggcgctc gacctttacg cgaacctccg
     5641 ccccgtgcgc gccctgccga acgtgccggc gcgctacccc gagctcgact tggtcgtcgt
     5701 gcgcgagaac acggagagcc tctacgcggg gctcgagcac gtcgtagtcc ccggcgtcgt
     5761 cgagagcctg aagataatca cggaaaaggc ttcgacgcgg atagcgcgct tcgccttcga
     5821 gtacgcgcgc cgcgaggggc gcaagaaggt gacgtgcgtc cacaaggcca acatcatgaa
     5881 gctctccgat gggctgttcc tcgagtgctt ccgcaatatg tcggccggct acccggaggt
     5941 ggccgcagag gacaagatag tcgacaacgc ctgcatgcag ctcgtcatgc gcccggagca
     6001 gttcgacata atgctgctcg aaaatttata cggcgacatc gtgtccgacc tgtgcgccgg
     6061 cctcataggg ggcttggggc tcgtccccgg cgcgaacata ggcgagctgg gcgccgtctt
     6121 cgaggccgtc cacggctcgg cccccgacat cgccgggcag ggcgtcgcca acccgactgc
     6181 gctgctccaa tccggcatac tcatgctccg ctacctcggc gagcgcgagg cggccgagcg
     6241 cgtcgagcgc gccatgctca aggtttacga ggaggggaag gtgcgcactc gcgacgtggg
     6301 cggcacctcc aagaccgacg agttcgcaag cgccgtcatc gccgccatgc agtgaggcgc
     6361 gacggcgccg cccgaaaatt tcttgacact ctcgccgcga cggtcataga gttccgcagc
     6421 aatcttctta aatctcagag agggccggtg cgaggctcac cggcccagcc tacgggcaag
     6481 cgtttcgtaa agaactcccc gcggacgcgg ccgcaaaccc gacaagccct cgcgccggcc
     6541 gctttaacaa ccacgccgtg cattcttccg tcctttgaag gagggctcac catgctctac
     6601 ccgcgctctg gcctacgacg ccaaacgaag cgagccagcg tcgcgctggc cttcacgctc
     6661 gcgctcacag tcatttcggc gctgccgccg ccgcgcgcgg cccgcgcgca ggaggggtca
     6721 gcgcccatac ccgtcatcgc gccgggcagc gccttccggc agaccaacct cgtcgccgac
     6781 tggcccggcg tcgcccgcgt ccaagacccc ctgctcgtga acccctgggg catctcgatg
     6841 acgacgacca gccccttctg ggtggcgaac gcggggacaa gtacctc
//
LOCUS       DASPKR010000766         3504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1801203, whole genome shotgun sequence.
ACCESSION   DASPKR010000766 DASPKR010000000
VERSION     DASPKR010000766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3504)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3504
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1801203"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..1029
                     /locus_tag="VD968_20035"
     CDS             97..1029
                     /locus_tag="VD968_20035"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF045485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004337 - geranyltranstransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="farnesyl diphosphate synthase"
                     /protein_id="HYE16740.1"
                     /translation="MMRASSEGRAADATLDEARAFLARVRAAVEAELGALVPPESAEP
                     RAVHAAIRWSLFAPAKRLRPALVFAAGETFGAQPAALTRTACAFEMIHTYSLIHDDLP
                     AMDDDDLRRARPTCHVKFGEATAILAGDALQALAFRAIAEDERLDAARRVALVAELAR
                     SAGTPEGMVAGQALDLAAEAREGVTAGELELIHRRKTGALIRSAARAGALVAGASPRQ
                     LECVTRYAEELGLLFQITDDLLDVTASAEDLGKTPGKDARAQKATYPSVHGLGPARER
                     ARRAYDEACAALDDAGTGAELLRSLARLVLERRA"
     gene            1093..1275
                     /locus_tag="VD968_20040"
     CDS             1093..1275
                     /locus_tag="VD968_20040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16741.1"
                     /translation="MVPSLDLLAVLNLLGAGQGLLLALALATVKRGDRAALAQVRFLV
                     AASMRGASARGEGPRN"
     gene            complement(1333..1590)
                     /locus_tag="VD968_20045"
     CDS             complement(1333..1590)
                     /locus_tag="VD968_20045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16742.1"
                     /translation="MSDLPEAGVILVAFEKLFGGGRGVKKFSRSGLRYVELGGDSVLV
                     EQNPKKSSEWAELARAGRRVAWLLRDGEYLARVVDGEVTFL"
     gene            complement(1615..2004)
                     /locus_tag="VD968_20050"
     CDS             complement(1615..2004)
                     /locus_tag="VD968_20050"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE16743.1"
                     /translation="MPARRSILIADDYDDNRELLRLMLEVEGYEIREARDGREALEAA
                     RAELPALALIDLSMPALDGWGLLRELRSDERTRSIPCVAVTAFAANQDRRRALEAGFD
                     AYISKPFRARELIEIVRGLLDGDGDKR"
     gene            2364..>3504
                     /locus_tag="VD968_20055"
     CDS             2364..>3504
                     /locus_tag="VD968_20055"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HYE16744.1"
                     /translation="MSSGDLEKSLRAEIEGYIEGRLSGLQEEVARLQSQLNEAFTRLL
                     ERTDSGAQSGASLAVAISDHLRNARNEGIEAAAAGSTRARASSEIALIKAAVDDLESQ
                     HTQADILNALVNRAAAFAPRVAFFVVKNERATGWRARGLEGTVGDDSVREISLPVSSD
                     TLIGEVVRARSTWSGGPGAHAEDHSIYGHFGDEPPQRMVAVPMIAREKTVAVLYADSA
                     ALDSDAVNLEALETLVRVAGMAVELLAARRHAPGAAAATTAAQPAREEHAPVEARPAP
                     SPEPPHEPAAAQQQHAAAPSPSAASPSAEQPPVDEWTGRADVSGEPASSPQPAQGAET
                     RPQQADAAVSPLGTSRRYGSMDMDFPVEVGEDEKRYHNEARRFARL"
BASE COUNT          533 a         1304 c         1198 g          469 t
ORIGIN      
        1 gcatcgaagt cctgctgcgc ggcggcgacg gctcgacact tgccgtcccg ttcgaggccg
       61 aggagttcgg cgtcggcgcg gaagacgaca cggaagatga tgagagcgtc ttctgaaggc
      121 cgcgcggccg acgccacact cgacgaggcg cgcgcctttc tcgctcgcgt gcgcgcggcg
      181 gtcgaggccg agctgggcgc ccttgtgccg cccgagagcg cggagccgcg cgcagtccac
      241 gcggcgattc gttggagcct cttcgcgccg gccaagcgcc tgcggccggc gctcgtcttc
      301 gccgcgggcg agaccttcgg ggcgcagccc gccgcgctca cccgcacggc ctgcgccttc
      361 gagatgattc acacctactc gctcatacac gacgacctgc cggcgatgga cgacgacgac
      421 ctgcgccgcg cccgccccac ctgccacgtc aagttcggcg aggccaccgc catcctcgcc
      481 ggcgacgccc tccaggcgct cgccttccgg gcaatagccg aggacgaaag gctcgacgcc
      541 gcgcgtcgcg tcgcgctcgt agctgagctc gcgcgctcgg ccggcacccc cgaggggatg
      601 gtcgcggggc aggcgctcga cctcgcggcc gaggcgcgcg agggcgtgac ggcgggcgag
      661 cttgagttga tacaccggcg caagacgggc gcgctgatac gctcggcggc gcgggccggc
      721 gcgctggtgg cgggcgcgag cccgaggcag ctcgaatgcg tcacgcgcta cgcagaagag
      781 ctggggctgc tcttccagat aaccgacgac ctgttggacg tcaccgcctc ggccgaagac
      841 ctcggcaaga cgcccggcaa ggacgcgcgc gcccagaagg ccacgtaccc ttccgtccac
      901 ggcctcggcc cagcgcgcga gcgagcgcgg cgcgcttacg acgaagcctg cgccgccctc
      961 gacgatgccg gcacgggcgc cgagctcctg cgctcgctcg cccgcctcgt cctcgagcgc
     1021 cgcgcctgaa cgaagggggc gctcccactc gcccctcgct ctcgacccta tcccgaacac
     1081 gggtctcgcc cgatggttcc ttctctcgac ctgctcgcgg ttctcaacct gctcggcgcg
     1141 gggcaggggc tgctgctcgc gctggcgctc gccaccgtca aacgcggcga cagggccgcg
     1201 ctggcgcagg tgcgcttcct cgtcgcggcc tctatgcgag gggcgtcggc gagaggtgag
     1261 gggccgagaa actaaaaaga gcgggcggcg aggcccgccc cgccgcccgc tctttacttc
     1321 tcttgccgcg cgctaaagga aggtaacctc gccgtcaacg acgcgcgcga ggtactcgcc
     1381 gtcgcgcaga agccacgcga cgcgccggcc cgctcgcgcg agctcggccc actcgctcga
     1441 cttcttcggg ttctgctcga cgaggacgct gtccccgccc agctcgacgt agcgcagccc
     1501 cgagcgcgag aacttcttga cgccgcgccc gccgccgaaa agcttctcga acgcgaccag
     1561 tatcacgccc gcctctggaa ggtcgctcat aagggagtaa agggtcggcg atctctaccg
     1621 cttatcgccg tcgccgtcga ggaggccgcg cacgatctct atgagctctc tggcgcggaa
     1681 gggcttggag atgtacgcgt cgaagccggc ttcgagggcg cgccggcgat cctggttggc
     1741 ggcgaaagcc gtgacggcga cgcaggggat ggagcgtgtg cgctcgtccg agcgcagttc
     1801 gcgcagcagc ccccagccgt cgagcgcggg catcgagagg tctatgagcg cgagcgcagg
     1861 cagttcggcg cgggcggcct cgagtgcctc gcgcccgtcg cgggcctcgc gtatctcgta
     1921 gccctcgact tcgagcatca ggcgcagaag ctcccggttg tcgtcgtagt cgtcggcgat
     1981 gagtatgctt cttcgggcgg gcatcgtcgg gcgttccggc ctgcggggcg gctcgctcgc
     2041 cccctcttca aagccctacc ggctcctggc tatgtcaggt agcgggtaca gtgccgggag
     2101 agtcgaaccg accttataac gggcccgcac gcgccgagtc aaaccgggcg ggcgcgcccc
     2161 gcggaagagt ctcttgacac ccctcagccg cgccgtccat aatcctgaaa tggcggcgcg
     2221 cgaaggcttt ggcacccatc cggcgccggc cctcaaaccc gaccggcgag cccgcccgag
     2281 agagtggcct ccctttcaaa gccggtcttg cgcggctccg ccccggaagc cgaaccagcc
     2341 cagacagagg agacgcaaaa gccgtgtcga gcggagacct ggaaaagagc ctgcgcgccg
     2401 agatagaagg ctacatcgag gggcgcctga gcggccttca ggaagaggtc gcgcgccttc
     2461 agagccagtt gaacgaagcg ttcacgcgcc tcctggagcg caccgacagc ggcgcgcagt
     2521 cgggcgcctc gctcgccgtc gccatatccg atcacctgcg caacgcgcgc aacgaaggca
     2581 tagaagccgc cgcggccggc tcgacgcgcg cgcgcgcctc atccgagata gcgctcatca
     2641 aggccgccgt tgacgacctc gagtcgcagc acacgcaggc cgacatactg aacgcgctcg
     2701 tcaaccgcgc cgccgcgttc gcgccgcgcg tcgccttctt cgtagtcaag aacgagcgcg
     2761 ccacgggctg gcgcgcgcgc ggcctggaag gcacggtggg cgacgactcc gttcgggaaa
     2821 tctctctgcc cgtctcgtcc gacacgctca taggcgaggt cgtgcgcgcg cgaagcacct
     2881 ggagcggcgg ccccggcgcg cacgccgaag accactccat ctacggccac ttcggcgacg
     2941 agccgccgca gcgcatggtg gccgtgccga tgatagcgcg cgagaagact gtcgccgtgc
     3001 tctacgccga cagcgcggcg ctggactctg acgccgtcaa cctcgaagcc ttagagaccc
     3061 ttgtgcgcgt cgccggcatg gccgtcgagc ttctggccgc gcgccgacac gcccccggcg
     3121 ctgccgccgc gacgactgcc gcgcagcccg cgcgcgaaga gcacgcgccc gtcgaagccc
     3181 ggccggcccc gagccccgag cctccccacg agcccgccgc cgcgcagcaa cagcacgccg
     3241 ccgcgccttc gccttccgcc gcctcgccgt cggccgagca gccgccggtt gacgagtgga
     3301 cggggcgcgc tgacgtgagc ggcgagcccg cctcgtcgcc acagccggcg cagggcgctg
     3361 agacccgacc gcagcaggcg gacgcggccg tctcgccgct cggcacctcg cgccggtacg
     3421 gctcgatgga catggacttc cccgtcgagg tcggcgagga tgagaagcgc taccacaacg
     3481 aggcgcgccg cttcgcgcgc ctgc
//
LOCUS       DASPKR010000767         6654 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_768507, whole genome shotgun sequence.
ACCESSION   DASPKR010000767 DASPKR010000000
VERSION     DASPKR010000767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 6654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6654)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6654
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_768507"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1155)
                     /locus_tag="VD968_20060"
     CDS             complement(<1..1155)
                     /locus_tag="VD968_20060"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HYE16745.1"
                     /translation="MSSRARAPRRRLSLTLLAFPLCAALFSPGHEVPVSAVAPGACDT
                     PSFGAANNFSAGSSPTSVAAGDFDGDADLDLAVTNGAAGNVSVLLGGGAGAFGAATNY
                     GVNSLPNSVADGDFDGDGDADLAVANGGANNVSVLLGNGDGTFGAKSDFGTGNQPIHV
                     AVGDFNGDGKTDLATADYNASGVSVLLGNGDGTFGAAASFAAGTFPSSVGAGDFNGDG
                     KPDLAVANSGSNNVSVLLGNGAGVFAGPTNFAAGSAPTSIAVGDFNGDGRADAATANY
                     NSASISVLFGNGDGTFGAAAAYGAGTNPNWIAAADLNGDGKLDLATANYGSENVSALL
                     GDGAGTFGAAVNFTTGNVPFSVVAADLDGDGKTDLATADRPNSVSVLLNGC"
     gene            complement(1404..3251)
                     /locus_tag="VD968_20065"
     CDS             complement(1404..3251)
                     /locus_tag="VD968_20065"
                     /inference="COORDINATES: protein motif:HMM:NF015557.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HYE16746.1"
                     /translation="MTPSIATVLVLLLVALILFATEKIPIDIVAILLVIGLVLTGTLD
                     ASQAFAGFGNDIVITIAGLFLLTGGLVKTGVVDLVGRRLHRIAGGNEFRLTTLIMFTA
                     AACASVMKNTTTTAMFVPVVLGIAQRARVQPSKLLMPLAFGAILGGTCTLIGTSTNLA
                     VSGALTKLGQNPELGERYANADPALLRPFSMFELTPVGIAIVAVGMLYMLLLGLRLLP
                     GRGGAESLMDQYQIREYISEVIVLDGSPLVGQTLGEANLSEILDLTVIGIIRGVQGRI
                     PPRSEEKIRADDLLLVQGRMDDILRVKGEAGIEIRPDFKLSQRDLEAGDVELFEVMVL
                     RGSDLNGRTLRSMNFRERFDLTVLAINRHGMALLTKLSTVTLRFGDVLLVQGKKERVE
                     RLTSENNLLLLEGGLGTRERANKRGWAIAAFGLFLLLSMSKYFSPVEVPLSVAVLLGA
                     LVLLVSRAVLVQEMYDLVDWRLIVLIACMISFGAAMEKTHADQYLADVIVRYFESYGP
                     LAVLAGFFALTVALTQPMSNQAAALVVLPIAVKTALLLGLNPRAFAVAVTYAASCSFL
                     TPLEPACVLIYTPGRYRFFDFVKVGSILTLAVFAIVILLVPYFWPLGGQ"
     gene            3379..3888
                     /locus_tag="VD968_20070"
     CDS             3379..3888
                     /locus_tag="VD968_20070"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYE16747.1"
                     /translation="MAERRVLVIEDQEDLAALYETALTEDGFRVSKAYTGEEGVALFE
                     DNGADAVLLDMTLPEMHGVQTLQRIRELNTNVPVVVVTGETSDETRQQCERLGVQEYL
                     SKPAGNSEISQALRRALADPKTTTEEYQVVTLRLPTRIIRCLMALDENLERAVETICE
                     EKFESKTEA"
     gene            complement(3885..4904)
                     /locus_tag="VD968_20075"
     CDS             complement(3885..4904)
                     /locus_tag="VD968_20075"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYE16748.1"
                     /translation="MLRVEYRDGLYLPDLDLWFDADAPRERCIISHAHSDHIAEHRAI
                     VATPETARIFRHRVGDTEVEPLPYGERRDYGRYALTMFPAGHCLGSAQILVEADGERL
                     VYTGDFKLRPNVAAENGVVVPCDTLVMESTFGDPQYRFPPDVATYDRLYAACDRALSA
                     SAVPVVLAYALGKSQEALELLLRRGYRVTLHGSVWNVTEIYRELGVQFSGPYERYDRE
                     RLKGRVLIAPPGCRKQPMILNIERRYLIMLTGWAVSRSAPYMYKGVDLVLPLSDHADF
                     DDLLRLARESGARRVITMHGARKFAAILREHGFNAEHLAQHPSQQKERATKRAATAVE
                     QKLFD"
     gene            4989..5744
                     /locus_tag="VD968_20080"
     CDS             4989..5744
                     /locus_tag="VD968_20080"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HYE16749.1"
                     /translation="MSEETPRAEVFEGGPGAAEPPKEALRRRLAARRLLRAESFYGFG
                     LAAFAVLALLAYRHAYFGWDLRAARAVQSVDFPGWAEFMRAASYAGDGWVPHALVAAT
                     MLLFFWRRRFSEGAGIVLSAGAGGLLSKALKILVGRPRPSADLVGFSYLSDEMSFPSG
                     HVTFYVCYFGFLFFVAYAVLPRGSLSRRLALALAALPVLLVGLSRVYLRAHWPSDTLG
                     AYLFAGLWLGLSLEMYRRWKKRATIKKTVGSSQ"
     gene            complement(5823..>6654)
                     /locus_tag="VD968_20085"
     CDS             complement(5823..>6654)
                     /locus_tag="VD968_20085"
                     /inference="COORDINATES: protein motif:HMM:NF015836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16750.1"
                     /translation="LTHHGYLMGETLYDNVVSKSPFGATPVYFYLLFLLIKTPPVLLV
                     MLVVGLFVAAKRWREPGPLFVLMMFVLWVVPYSLFGAKWLRYALSLMPFVYMLAAVGV
                     VWAAGRAAALARRLRLRGAAAGAAVAIFLLAAPAWAALRSAPHHALYTNLLAPDRAGY
                     YFPHDEFYDDGLREALRYVAEHAPPGATVAHETPGVARYYLEKFGRADLRSRTISDPD
                     FELTREPPPTYAILQRGRTYFENREELRQARSGAAGFTLRREVLIEGALAAEVYANDK
                     "
BASE COUNT         1111 a         2144 c         2349 g         1050 t
ORIGIN      
        1 gcagccgttg agcaggacgg agacgctgtt gggcctgtcg gccgttgcca ggtctgtctt
       61 gccgtctccg tcgaggtcgg ccgcgacgac cgagaagggg acgttgcccg tcgtgaagtt
      121 gacggcggcg ccgaaagtgc cggccccgtc gcccaggagc gccgagacgt tctcggagcc
      181 gtagttcgcc gtggccaggt ctaacttgcc gtcgccgttc aagtccgcgg cggcgatcca
      241 gttggggtta gtgcccgcgc cgtaggcggc cgcggcgccg aaggtgccgt cgccgttgcc
      301 gaacaagacg gagatgctgg cggagttgta gttcgcggtg gccgcgtctg cgcggccgtc
      361 cccgttgaag tcgccgacgg ctattgaagt gggggcggag cccgccgcga agttggtcgg
      421 gccggcgaac acgcccgcgc cgttgccgag cagcaccgag acgttgttcg agccgctgtt
      481 cgcgacggcc aggtctggct tgccgtcgcc gttgaagtcc cccgcgccga cggacgacgg
      541 gaacgtgccc gcggcgaagc tggccgcggc gccgaaggtg ccgtcgccgt tgcccagcag
      601 caccgacacg cccgaggcgt tgtagtcggc cgtcgcgagg tctgtcttgc cgtccccgtt
      661 gaagtcgccg acggcgacgt ggatgggttg attgcccgtg ccaaaatcgg acttcgcgcc
      721 gaaagtgccg tcgccgttgc ccagcaggac ggagacgttg ttggcgccgc cgttcgccac
      781 ggcgaggtca gcgtcgccgt cgccgtcgaa gtcgccgtcg gcgaccgagt ttggcaggct
      841 gttcacgccg tagttagtcg cggccccaaa ggcgcctgcg ccgccgccca gcagcaccga
      901 cacgttgccg gcggcgccgt tcgtcacggc caggtcgagg tcggcgtcgc cgtcgaagtc
      961 gccggccgcg acggacgtgg ggctgctgcc cgcgctgaag ttgttagccg cgccgaagct
     1021 cggcgtgtcg caggcgcccg gggcgacggc gctcacgggg acttcgtgac cggggctgaa
     1081 cagggcggcg cagagcggga acgccaggag ggtgagtgac agtctccggc ggggggcgcg
     1141 ggcgcgtgag ctcatgggga cttctccttg tgaggcgtta gggagggcgc ctcggctcag
     1201 ggcacacgga gacgcggggg gctcaggcgg cgcatggcga gttggttggc ccgccgccgt
     1261 ggcgagtggc gtcggccggg gttggcgtcc cggcctctgc tgaagggggc ggcggcgtga
     1321 gccttctcca ccgcccccgt caaagagtgg cggcgacagt accacgccgc ccccgccgct
     1381 acaagctttt tcgggcgcaa gtcttactgg ccgccgagag gccagaagta ggggacgagc
     1441 aggatgacga tggcgaagac ggccaaggtg aggatcgagc cgaccttgac gaagtcgaag
     1501 aagcggtagc ggcccggcgt gtatatgagc acgcaggccg gctccaaggg cgtcaggaac
     1561 gagcaggagg ccgcgtaggt tacggcgacg gcgaaggcgc gcgggttcag gccgagcagg
     1621 agcgcagtct tgaccgcgat gggcaggacg acgagcgccg ccgcctggtt cgacatcggc
     1681 tgcgtcagcg ccaccgtcag cgcgaagaag cccgcgagca ccgcgagcgg gccgtaggac
     1741 tcgaagtagc gcactatcac gtcggcgagg tactggtcgg cgtgcgtctt ctccatcgcc
     1801 gcgccgaacg agatcatgca ggcgatgagg actatgaggc gccagtcaac gaggtcgtac
     1861 atctcctgca cgagcaccgc gcgcgacacc agcagcacga gcgcgcccag aagcaccgcg
     1921 accgacagcg gcacctctac aggcgagaag tatttcgaca ttgagagcag gaggaacagc
     1981 ccgaaggccg ctatcgccca accgcgcttg ttcgccctct cgcgcgtccc cagcccgccc
     2041 tccaggagca gcaggttgtt ctcggacgtg agccgctcga ccctctcctt cttgccctgc
     2101 acgagcagca cgtcgccgaa ccgcaaggtc acggtcgaaa gtttcgtcag cagcgccatg
     2161 ccgtggcggt tgatggcgag caccgtgagg tcgaagcgct cgcggaagtt catgctccgc
     2221 agcgtccggc cgttcaagtc cgacccgcgc aagaccatca cctcgaacag ctcgacgtcg
     2281 ccggcctcga ggtcgcgctg gctcagcttg aagtcgggcc gaatctctat gccggcctcg
     2341 cccttcacgc gcagtatgtc gtccatgcgc ccctgcacga gcagcaggtc gtcggcacgt
     2401 atcttctcct ctgagcgcgg cggtatgcgc ccctgcacgc cgcgtatgat gcctatgacg
     2461 gtgaggtcga gtatctcgct taagttcgcc tcgccgagcg tctgcccgac gagaggcgag
     2521 ccgtcgagca cgatgacctc cgagatgtac tcgcgaatct ggtactgatc catcagcgac
     2581 tcggcgccgc cgcggccggg caggagcctc agccccagca gaagcatgta gagcatgccg
     2641 acggcgacga tggctatgcc gactggcgtg agctcgaaca tcgagaaggg ccgcaagagc
     2701 gccgggtcgg cgttggcgta gcgctcgccc agctccgggt tctgcccgag cttcgtgagc
     2761 gcgcccgaga cggccaggtt agtcgaggtg ccgattagcg tgcaggtgcc gcccaggatg
     2821 gcgccgaagg cgagcggcat caggagcttc gacggctgca cgcgggcgcg ctgcgctatg
     2881 cctaagacga cggggacgaa catcgccgtc gtcgtcgtgt tcttcatcac ggaggcgcac
     2941 gcggcggccg tgaacattat gagcgtggtg aggcggaact cgttcccgcc cgcgatgcgg
     3001 tgcaggcgcc ggccgaccag gtcaaccacg ccggtcttga ccaggccgcc ggtcagcagg
     3061 aagaggccgg cgatggtgat gacgatgtcg ttgccgaagc cggcgaacgc ctgggaggcg
     3121 tcgagcgtcc ccgtcagcac cagccctatg acgagcagga tggcgacgat gtcaatgggg
     3181 atcttctcgg tcgcgaagag gatcagggcg accagaagca gcacgaggac tgttgcgatt
     3241 gacggggtca tagacgactt ctgctataat gcccacacag ccggacaagg tgtcgaaaat
     3301 ctgtctttat aatttcgccg aaggactagg gcgagaattt aaaggccaaa cggggaagtt
     3361 tgcaaggggg aaggaaaaat ggccgagcgc cgcgttctcg tcatagagga tcaggaagac
     3421 ctcgcggctc tgtacgagac tgcgctgacg gaggatggct tccgggtctc gaaggcctac
     3481 acgggcgagg agggcgtcgc cctcttcgag gacaacgggg ccgacgccgt cctcctcgac
     3541 atgaccctgc ccgagatgca cggcgtgcag accttgcagc ggatacgcga gcttaacacc
     3601 aacgtccccg tcgtcgtcgt cacgggcgag acgagcgacg agacgcgaca gcagtgcgag
     3661 cgcctcggcg tgcaggagta cctgtcgaag cccgccggca actcggaaat ctcccaggcc
     3721 ctgcggcgcg cgctcgccga ccccaagacc acgacggaag aatatcaggt cgtcacgctc
     3781 cggctcccga cccgcatcat caggtgcctc atggccctcg acgagaacct cgagcgcgcc
     3841 gtcgagacca tctgcgaaga gaagttcgaa tcaaaaactg aagcttagtc gaagagtttc
     3901 tgctcgacgg ccgtggcggc gcgcttagtc gctctctcct tctgctgcga ggggtgctgc
     3961 gcgaggtgct cggcgttgaa gccgtgctcg cgcagtatgg cggcgaactt acgcgcgccg
     4021 tgcatcgtga tgactctccg cgcgccggac tcgcgcgcaa ggcgcagcag gtcgtcgaag
     4081 tcggcgtgat ccgagagcgg gagcactagg tcaactccct tgtacatgta gggcgcgctc
     4141 ctgctcacgg cccagcccgt cagcatgatg aggtagcgcc gctcgatgtt aagaatcatt
     4201 ggctgcttgc ggcagcccgg cggggcgatg aggacgcggc ccttcaggcg ctcgcggtcg
     4261 tagcgctcgt acgggccgga gaactgcacg cccagctcgc ggtaaatctc agtcacgttc
     4321 cagacggagc cgtgaagggt cacgcggtag ccgcggcgga gcaggagctc aagcgcctcc
     4381 tggctcttgc cgagcgcgta ggcgaggacg acggggacgg ccgaggcgga gagagcgcgg
     4441 tcgcacgcgg cgtagagccg gtcgtaggtg gcaacgtcgg gcgggaagcg gtactgcggg
     4501 tcgccgaagg ttgactccat gacgagcgtg tcgcacggga cgacgacgcc gttctcggcc
     4561 gcgacgttcg gccgcagctt gaagtcgccc gtatagacga gccgctcgcc gtccgcctcc
     4621 acaagaatct gcgccgagcc gaggcagtgg cctgccggga acatcgtcag cgcgtagcgg
     4681 ccgtagtcgc gccgctcgcc gtatggcagg ggctcgacct ccgtgtcgcc gacgcggtgg
     4741 cggaatatgc gcgccgtctc gggcgtggcg acgatcgcgc ggtgctcggc gatgtggtcg
     4801 gagtgggcgt gcgagatgat gcagcgctcg cgcggcgcgt cggcgtcgaa ccaaaggtca
     4861 aggtcgggca ggtacagccc gtctctgtac tcgactctga gcaaaacttc ctcccccgcc
     4921 cgcgcttgcc gcgcccgccc ggcttcgttt atgttcggga gcaaactcgg gaagattata
     4981 acagttcgat gagcgaagag acgccgcggg cggaagtgtt tgagggcggg ccgggagcgg
     5041 ccgagccgcc gaaggaggcg ctcaggcgca ggctcgccgc ccgaaggctc ctgcgcgccg
     5101 agtccttcta cggcttcggc ttggcggcct tcgccgtcct cgccctgctc gcctaccgcc
     5161 acgcctactt cggctgggac ttgcgcgcgg cgcgcgccgt gcagtcggtt gactttccgg
     5221 gctgggccga atttatgcgc gccgcctctt acgcgggcga cggctgggtg ccgcacgcgc
     5281 tcgtcgcggc gacgatgctc ctcttcttct ggcggcggcg cttcagcgag ggcgccggga
     5341 tagttctgag cgccggggcg ggcggcctct tgagcaaggc cctcaagatt ctcgtaggcc
     5401 gtccccgccc ttcggccgac ctcgtgggtt tctcttacct gagcgacgag atgagcttcc
     5461 cctcggggca cgtcaccttc tacgtctgct acttcggctt cctcttcttc gtggcctacg
     5521 ctgtgctgcc gcgcgggtcg ctctcgcgcc ggctggcgct ggcgctcgcg gcgctgcccg
     5581 tcctcctggt cggcctctcg cgcgtgtacc ttcgcgcgca ctggcccagc gacacgctcg
     5641 gcgcatacct gttcgccggc ctctggctcg gcctctcgct ggagatgtac cgccgctgga
     5701 agaagcgcgc gacgataaag aaaacagtag gcagtagcca gtagaagaac ctcctcatcg
     5761 gggcggacag gttcccaggt tcaacccact cagggcggag cctactgact actggctacc
     5821 ggctacttgt cgttagcgta aacttccgcg gcgagggcgc cttcgatgag gacttcgcgg
     5881 cggagcgtga agccggcagc gcccgagcga gcctgccgca gctcttcgcg gttctcgaag
     5941 taggtgcggc cacgctggag tatcgcgtag gtcggcggcg gctcacgcgt cagctcgaag
     6001 tcggggtctg aaatggtgcg cgagcggagg tctgcgcgcc cgaacttttc gaggtagtaa
     6061 cgcgcaaccc ccggcgtctc gtgcgccacc gtcgcgccgg gcggcgcgtg ctctgctacg
     6121 tagcgaaggg cctcgcgtag cccgtcgtcg tagaactcgt cgtgcgggaa gtagtagccg
     6181 gcgcggtccg gcgcgagcag gttcgtgtag agcgcgtggt gcggcgcgct gcggagcgcc
     6241 gcccaagcgg gtgcggccag caggaagatt gcgactgcgg cgcccgccgc ggccccgcgc
     6301 aggcgcaggc gccgcgcgag agccgccgcg cgcccggccg cccacacgac gccgacggcc
     6361 gcgagcatat agacgaacgg catgaggctc agcgcgtagc gcagccactt cgcgccgaag
     6421 agcgagtaag gcaccaccca caggacgaac atcatcagca cgaacagcgg gccgggctcc
     6481 ctccaacgct tcgccgcgac gaatagccct acgacgagca ttaccagaag cacgggcggc
     6541 gtctttatca gaaggaagag caggtagaaa tagacgggcg tcgccccgaa gggcgacttc
     6601 gacacgacgt tgtcgtagag cgtctcgccc ataaggtagc cgtggtgcgt caaa
//
LOCUS       DASPKR010000768         2578 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1801679, whole genome shotgun sequence.
ACCESSION   DASPKR010000768 DASPKR010000000
VERSION     DASPKR010000768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2578)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1801679"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..285
                     /locus_tag="VD968_20090"
     CDS             <1..285
                     /locus_tag="VD968_20090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16751.1"
                     /translation="KSRECRRWYQRKFFYLFTCEYCFSHYVTAFFLVVTGYKLLYDDW
                     RGYLVGGFALVWVANQYMSLYNRLRLDIKSEKIETKIKEKVAETQDKGRQ"
     gene            complement(286..1326)
                     /locus_tag="VD968_20095"
     CDS             complement(286..1326)
                     /locus_tag="VD968_20095"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF002872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003872 - 6-phosphofructokinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006002 - fructose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent 6-phosphofructokinase"
                     /protein_id="HYE16752.1"
                     /translation="MGLRVGIMTGGGDCPGLNAVIRAVVRRAVLEEGSEVIGVRNGWR
                     GLLEDDMQPLTRLSVTGLLPRGGTILGTSRVNPKDDSSHLARIRATWEKHGLEALVVV
                     GGEGTLRAAREMWRDHGYPIVGIPKTIDNDLSGTDFPFGFDTAVNTVMEAVDKLHSTA
                     ESHHRVMVIEVMGRHSGWIAAYGGIAGGADVILVPERPFRLSRVCELLKHREQQGSAF
                     SIVVIAEDAHPHPDEDFLDDVTKEQIYKHGRLGGIGFHLAREIERCTGIEARHANLGY
                     VQRGGSPTAFDRVLATRFGVKAFELVLEKRWGLMVALQGNSVVSVPLDEVVDKIKRLD
                     DEIYKVAEVFFG"
     gene            1450..2250
                     /gene="tsaB"
                     /locus_tag="VD968_20100"
     CDS             1450..2250
                     /gene="tsaB"
                     /locus_tag="VD968_20100"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HYE16753.1"
                     /translation="MGEGTAGAGLLTLSADTATDRRSVAVMRGRRVLALRAGELRDGG
                     ASSALSEIDAALREASVALRDVELLAVAAGPGSFTGLRSGIATMKALAVTLNKPLVGV
                     QTLHAVAFAARPARRLVAMLPAGRGEVFAQVLGASGEGVFELDDEGVAAPPRHVPPAR
                     LLEELALGGGGLKFAGAGAEKYFDLIEGAGRGAGLKVRRAASPAEEAGEGEWLVLAGG
                     AEALAESVGLLAQAKLAAGEGAGADELRAIYVRPSDAELKERCQAPGQ"
     gene            2229..>2578
                     /locus_tag="VD968_20105"
     CDS             2229..>2578
                     /locus_tag="VD968_20105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16754.1"
                     /translation="MSSARAVREIEHAGFLIGAMTEHDLLEVVEIEETTGLSLWGWDA
                     YRAELERPEALMLAARSPRPSPLAPSTCANTSPRPAGSIATSRRAGRAANDTACKVCT
                     PTSGLFRVTASAFIV"
BASE COUNT          401 a          817 c          926 g          434 t
ORIGIN      
        1 aagagccggg agtgccgccg gtggtatcag cggaaattct tctacctgtt cacgtgcgag
       61 tactgcttca gccactacgt cactgccttc ttcctcgtcg tcaccggcta caagctcctc
      121 tacgacgact ggcgcggcta cctagtcggc ggctttgcgc tcgtgtgggt cgccaaccag
      181 tacatgagcc tctacaaccg cctgcggctc gacatcaagt cggagaagat cgagacgaag
      241 ataaaagaga aggtagcgga aactcaggac aaagggcggc agtgatcagc cgaagaagac
      301 ctccgcgacc ttgtagattt cgtcgtcgag ccgcttgatc ttgtccacga cctcgtcgag
      361 cgggacggat acgacgctgt tgccttgcaa ggcgaccatc aggccccagc gcttctccag
      421 cacaagctcg aacgccttga cgccgaagcg cgtggcgagc acgcggtcga acgccgtggg
      481 cgagccgccc ctctgcacgt agccgaggtt ggcgtggcgc gcctctatcc cggtgcagcg
      541 ctcgatctcg cgcgcgaggt ggaagcctat gccgccgagc cggccgtgtt tgtaaatctg
      601 ctccttcgtc acgtcgtcga ggaagtcctc gtcggggtgc gggtgggcgt cttcggcgat
      661 gacgacgatg gagaaggcgc tgccctgctg ctcgcggtgc ttcagaagct cgcagacgcg
      721 cgagaggcgg aaggggcgct cggggacgag tatcacgtcg gcgccgcccg ctatcccgcc
      781 gtaggccgct atccagcccg agtggcgccc catgacttcg atgaccatga cgcggtggtg
      841 cgactcggcc gtggagtgca gcttgtccac ggcctccatg actgtgttga cggccgtgtc
      901 gaagccgaag gggaagtccg tgccggagag gtcgttgtca atcgtcttgg ggatgccgac
      961 gatggggtag ccgtggtcgc gccacatctc gcgcgcggcg cgtagcgttc cctcgccgcc
     1021 aacgacgacg agggcttcga gcccgtgctt ctcccacgtc gctcttatcc gggcgaggtg
     1081 gctgctgtcg tccttcgggt tgacgcgcga ggtgccgagg attgtcccgc cgcgcgggag
     1141 taggcccgtg actgacaggc gagtgagcgg ctgcatgtcg tcttcgagga gccctcgcca
     1201 gccgttgcgc actccgatga cctcggagcc ctcttcgagc accgcgcgcc tgacaacggc
     1261 acggatgact gcgttcaggc cggggcagtc gccgccgccc gtcataatgc ccacacgaag
     1321 acccatcgcg cccccttgaa agtccagacc aacgtcagaa ttgattgatt cctgtcccgc
     1381 gcctataatc tcgcgacaca ccgggcgtgt caaacttagg gtttttgagg cgacgaaggg
     1441 ggctgtgagt tgggcgaggg gacggcgggc gcgggccttc tgactttgag cgctgacacg
     1501 gcgactgaca ggcgcagcgt tgccgtcatg cgcggccggc gcgtgctcgc gctgcgcgcg
     1561 ggggagctgc gtgacggcgg cgcgtcgagc gcgctctcgg agattgacgc cgctctacgt
     1621 gaggcgtcgg tcgcgcttcg tgacgtggag cttttggccg tcgccgcagg gcccggaagc
     1681 tttacgggcc tgcgctctgg gattgcgacg atgaaggcgc tggccgtaac cctgaataag
     1741 ccgctcgtgg gtgtgcagac tctgcacgcc gtggcgttcg cggcgcggcc ggcgcggcgg
     1801 ctcgtcgcga tgctcccggc cgggcggggc gaagtcttcg cgcaggtgct cggggcgagc
     1861 ggggagggcg tcttcgagct cgatgatgag ggggtcgccg caccgccgcg tcacgtccct
     1921 cccgcgcggc tgctggaaga gcttgcgctc ggcggcggcg gtttgaagtt cgcgggcgcg
     1981 ggcgccgaga agtatttcga cttgatcgag ggcgctggcc gcggggcggg cttaaaggtc
     2041 aggcgcgcgg cgtcgccggc cgaggaggcg ggcgagggcg agtggctcgt actggcgggc
     2101 ggcgccgagg cgctcgccga gagcgtgggc ttgctcgcgc aggcgaagct cgcggcgggc
     2161 gaaggggccg gcgcggacga gctgcgcgcg atatacgtca ggccgtcgga cgcggagctg
     2221 aaggagcgat gtcaagcgcc agggcagtga gggagatcga gcacgcgggt ttcctcatcg
     2281 gcgccatgac cgagcacgac ctgctcgaag tcgtcgagat tgaggagact acggggctga
     2341 gcctgtgggg ctgggacgcc taccgcgccg agctggaaag gcccgaagcc ctcatgctcg
     2401 ccgcgcgctc gccccggccc tccccgctcg ccccgagcac ctgcgcgaat acttcgccac
     2461 gcccggccgg gagcatcgct acgagccgcc gcgctggccg cgccgcgaac gacacggcgt
     2521 gcaaggtctg cacacccacg agcggcttat tcagggttac ggccagcgcc ttcatcgt
//
LOCUS       DASPKR010000769         8354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1672586, whole genome shotgun sequence.
ACCESSION   DASPKR010000769 DASPKR010000000
VERSION     DASPKR010000769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8354)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8354
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1672586"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(144..1034)
                     /locus_tag="VD968_20110"
     CDS             complement(144..1034)
                     /locus_tag="VD968_20110"
                     /inference="COORDINATES: protein motif:HMM:NF005875.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyryl-CoA dehydrogenase"
                     /protein_id="HYE16755.1"
                     /translation="MEIKKVGVLGCGLMGSGIAQTAATAGFDVTVREVTDELCQRGFA
                     GIDKSLAKFAEKGTITAEQQGEIRGRLRGTTALEDLADCDIIIEAIIENLDTKRETFK
                     RLDEVCKSETVFASNTSSLSITEMMTSTSPERQRRFVGLHFFNPVPLMKLVEVVRTVL
                     TDEQVYERAVEFGRRLGKVPVRAGDRSGFIVNRLLVPYLLDAIRALEEGVGSIVDIDN
                     GMRLGCGHPMGPLTLLDFVGLDTTYYIAEIMFTEFRERRFAPPPLLKRMVMAGLYGRK
                     TGRGFYDYADPKNPVPMNLV"
     gene            complement(1077..2366)
                     /locus_tag="VD968_20115"
     CDS             complement(1077..2366)
                     /locus_tag="VD968_20115"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HYE16756.1"
                     /translation="MCRSCGALVGAGEARCMVCGAPAAGQAQEQPQRRPPQADRDTVR
                     FVRAVIRRPATFTFLFLLANVFLYVLMKLSGGATGNVLIAYGAKLNALIDEKGQWWRF
                     VTPIFLHVDVPGLGPLHLLANMYGLFILGPYVEKLYGSAKFVVFWVLTGVAGVVASYL
                     TVWPEMAERGALGRFLFKPYDVPSAGASGALFGLIGVLFVFGIKFRHELPEGLKRAFG
                     TGMLPTIVINLFIGYVGSGFIDNAAHLGGLAAGAALAALVGYKRVGPRGPVAYTWHSL
                     QVLCLLAVVAGFVMVALNFKAPPPRWGNRAGAQRQADGRDVEALVAFVNAMNEGQSAY
                     AEFLRGDPGALASAVEGLGKAPAVNEQAAALRDELKSLLARASDVAKGGGAEGKDGRR
                     RVQELNEDYGRWQERYAAWVRGEGRTLGIEFTEDKGK"
     gene            complement(2762..4777)
                     /locus_tag="VD968_20120"
     CDS             complement(2762..4777)
                     /locus_tag="VD968_20120"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-like domain-containing protein"
                     /protein_id="HYE16757.1"
                     /translation="MTILLACLFLSLTAAGGARGGAGVTVRQEGRVRAPELEGGRGWL
                     NTDKALSLARLRGKVVLLDFWTYGCINCMHVIPDLQRLEEEYRDQLVVIGVHSAKFEN
                     ERETENIRRIILRYGIEHPVVNDADFRIWNAYAVRAWPTQVLIDPAGYVVGKVAGEGH
                     YEALDAAIGELVNEFRKRGALDERPLKLALERAKVGDLPLAFPGKVLADERGDRLFIA
                     DSNHNRVVVTRLDGKLLYTIGTGERGRADGAFDRAGFHRPQGLALDDETLFVADTANH
                     LIRRVDLKARKVETIAGTGEQLRNYRVSGGPALSTRLSSPWDLLLAGRTLYVAMAGPH
                     QIWALDLNRREISVFAGSGREERTDGARAESAFAQPSGLASDGRSLYVADSESNIIRA
                     IKLSDGGAGAEVQTLAGGDLFDFGDRDGCGDDVRLQHPLGVAFHAGSLLIADTYNHKI
                     KQLDPATRQVKTFVGTGKSGQTDGAEGSFYEPGGLSVAPERGLLYVADTNNHAVRVVD
                     LKSKAVSTLVIRGLQPPAREAEAAAAGSDAGPDSEEIKLRPQRLGAGDGAALVFDVAL
                     PTGHHLNPSAPHRYKVTVEPGAGRLALGEGVAPVRSAKDLRLPLRLPLRAVSQGAATL
                     RAQLTLYYCREDNTGTCRIKTLVWLAPVEVTAELGAPREVKLQGKVE"
     gene            complement(4810..5181)
                     /locus_tag="VD968_20125"
     CDS             complement(4810..5181)
                     /locus_tag="VD968_20125"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HYE16758.1"
                     /translation="MDEFDRYRAAMNEKLLGGGHLGIKRFFALDTQAYEDGALDKRTK
                     ELMGLAASAVLRCDDCVTYHIKQCVDLGVTREEFLDAFNVALVVGGSITIPHLRRAID
                     RLDQLLEGGTAGGGPPGEHPH"
     gene            5398..5880
                     /locus_tag="VD968_20130"
     CDS             5398..5880
                     /locus_tag="VD968_20130"
                     /inference="COORDINATES: protein motif:HMM:NF013731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HYE16759.1"
                     /translation="MREDHEQVTNARGLLVISAGGRLFAVYEGEAECVAEGLRPAPLP
                     RAPRAVLGVVCVRGRMRTVLDPAALLGGDDDEAAVKNHEPAPRRVVCLRGDEQLALAA
                     DSVEHAPAPPEEEAAAADEPPLRATLTHGGRTIFLLDPAKLFEAAIHGSERRRQREKT
                     "
     gene            5945..>8354
                     /locus_tag="VD968_20135"
     CDS             5945..>8354
                     /locus_tag="VD968_20135"
                     /inference="COORDINATES: protein motif:HMM:NF012700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HYE16760.1"
                     /translation="MNEQAFGTLEYEGLRALVRRYAQTPMGAARADSLAPLGSVEDVR
                     RALARVTECAELRKRGVRWSFSGLEDPSDALARLAIEGAILDPLVLLELARLCEQAAD
                     ARASLSAEREAAPALWEVVEQLPRTLPALAARVFSKILPGGELDDRASPELARIRADI
                     VRLRSSITRSLEGLMRRSEEAIQDALVTLRNDRFVIPVRSDHRGRIAGVAHGFSSSGA
                     TVFVEPLETIESNNELQALRETEEREVARILLTLAEELRQELPAIGLAASAVAELDFV
                     NAKAALAAHTRAVGPVVGEDETLELVEARHPLLEESLREQGGEVVPVSFRLDRERPVM
                     VISGANAGGKTVVLKTAGLLSLMALSGLHVPAREARFPFYASVLADIGDRQSLAANLS
                     TFTSHVANIRSMMELCRPPALVLLDEVGTGTDPEEGSALGVAVVDHFRRACGAQVIAT
                     THYGGLKMYAANEEGVQNASVEFDERTLQPTYRLLVGVAGSSSGLEIARRFRLPEEVV
                     SNARSLVSENTLAAADYLRRIQREAEEAEALRRALEEERRAVAEEYAALESVAQKRER
                     ERQAEFARALERSVADFERRARELYEKVEDRAARARVEREAERRAAELRREAQQQRAQ
                     SRAASAQRGGEPGGVRVVRHGRDPEAAQPSSTTDAPAREPAVGDTVRLASLGATGTVE
                     RISPSGEAEVRVGNLRFREKLSNLETVGPARPAPAERDDGSLAARLRGMSRRGTEVRL
                     TQSREAPDAEINLIGKSTDEARDETDKFLDEAYLHGHARVRIIHGHGTGALRRAVAEL
                     LRSHP"
BASE COUNT         1278 a         2909 c         2860 g         1307 t
ORIGIN      
        1 cccgcccaac cagcggaaca tgtcggtcag gcgctcaatc atgtgccgtg tgagcgcgtt
       61 cctcttctcg gggcggtcga gccgcacgta ggcgagcgcc ccgcgctcct cgtaggcgat
      121 gttgaaatcc gagcccattc ggtctagacc agattcatcg gcacggggtt cttagggtcg
      181 gcgtagtcgt agaagccgcg ccccgttttg cggccgtaga ggccggccat caccatgcgc
      241 ttcaggagag gcggcggggc gaagcggcgc tcgcggaact ccgtgaacat tatctcggcg
      301 atgtagtagg tcgtgtcgag gccgacgaag tcgagcagcg tgagcggccc catcgggtgg
      361 ccgcagccga gcctcatgcc gttgtctatg tcaacgatgg agccgacgcc ctcctcgagc
      421 gcgcgtatgg cgtcgaggag gtagggcacg agcaggcggt tgacgatgaa gccggagcgg
      481 tcgcccgcgc gcacgggaac cttgccgagc cggcgcccga actcgacggc ccgttcatag
      541 acctgctcgt ccgtgagcac ggtgcggacg acctcgacca gcttcatcag cgggacgggg
      601 ttgaagaagt gcaggccgac gaagcgcctc tgccgctcgg gcgacgtgga ggtcatcatc
      661 tcggttatcg agagcgagga ggtgttcgag gcgaagaccg tctcggactt gcacacctcg
      721 tcgagccgct tgaaagtctc gcgcttggtg tcgaggttct cgatgatggc ctcgatgatt
      781 atgtcgcagt cggcgaggtc ttcgagcgcc gtggtgccgc gcagcctccc gcgaatctcc
      841 ccctgctgct cggccgtgat agtccccttc tcggcgaact tcgcgagcga cttgtcaatg
      901 ccagcgaacc cgcgctggca aagctcgtct gtgacttcgc gcaccgtcac gtcgaagccc
      961 gcagtcgcgg ccgtctgcgc gatgccggag cccatgagcc cgcagccgag cacgccgacc
     1021 ttcttaatct ccatcgtcag tattctccgt tcgtaaagtt ttcgtttatc ggaaagctac
     1081 ttccccttgt cttccgtgaa ctctatcccg agtgtgcggc cctcgccgcg aacccaagcg
     1141 gcgtagcgct cctgccagcg gccgtagtct tcgttcagtt cctggacgcg ccgccgcccg
     1201 tctttgccct ccgccccgcc gcccttcgcc acgtcggagg cgcgcgcgag gagcgacttc
     1261 agctcgtcgc gcagcgccgc ggcctgctcg tttacggccg gcgccttgcc cagcccttcg
     1321 accgcagacg ccagagcgcc agggtcgccg cgcaggaact cggcgtaggc cgactgcccc
     1381 tcgttcatcg cgttgacgaa ggcgacgagc gcctcgacgt cgcgcccgtc ggcctgccgc
     1441 tgcgcgcccg cgcggttgcc ccagcgcggc ggcggcgcct tgaagttgag ggcgaccata
     1501 acgaagcccg cgacgaccgc cagcaggcag agcacttgca gcgagtgcca cgtgtatgcg
     1561 acggggccgc gcggccccac acgcttatag ccgacgagcg cggcgagcgc cgcgcccgcc
     1621 gccagcccgc cgaggtgcgc ggcgttgtct atgaagccgc tgccgacgta gccgatgaag
     1681 aggtttatga cgatggtcgg cagcatcccc gtcccgaagg cgcgcttgag gccctcgggc
     1741 agctcgtgcc tgaactttat gccgaagacg aagagcacgc ctatcaggcc gaagagcgcg
     1801 cccgacgccc cggccgacgg aacgtcgtag ggtttgaaga ggaagcggcc cagtgcgccg
     1861 cgctcggcca tctcgggcca gacagtcagg tagctcgcca ccactccggc cactcccgtc
     1921 aagacccaga agacgacgaa cttcgcagag ccgtagagct tctcgacgta agggccgagg
     1981 atgaagaggc cgtacatgtt cgcgagcagg tgcaggggtc ccaggcccgg cacgtcaacg
     2041 tgcaggaaga tgggcgtgac gaagcgccac cactgtccct tctcgtctat cagcgcgttg
     2101 agcttcgcgc cgtaagcgat gaggacgttg cccgtggcgc cgcccgagag cttcatcaag
     2161 acgtagagga agacgttcgc gagcaggaag aggaaggtga aggtggccgg gcgacggatg
     2221 acggcgcgca cgaaacgcac cgtgtcgcgg tcggcctgcg gcggtcggcg ctgcggctgc
     2281 tcctgcgcct gccccgcggc cggggcgccg cacaccatgc agcgcgcctc gcccgcgccc
     2341 acgagcgcgc cgcagcttct gcacacgctc gggcggcccg cgtaggagcc cccctgtccg
     2401 gtttgacctt ccgccaaaat agtctgccga agaagacgaa ttatccgctg cccggattct
     2461 ataacgaagc gcgccgcgct gtcacaaggc gggcgcctgc acttcttttc gacagaaaag
     2521 ctgtcaggcg ttcccggtca gggagatcgc gtcggcgcgg caacaggagc tttacgcgcg
     2581 gtcgcgtcgc ggctcgcgct ttgtaaaaag gttggcggaa ttttctggct gggagtgaaa
     2641 ccgcgttgag actcagggca aggttccccg cgctgctcga aggccgccac gctcgtcgcc
     2701 ggccggggcg tcgccgtcgt cgagtcggag cttacgcact gagggcggcc gcacaccttc
     2761 ttcactccac cttcccctga agctttacct cgcgcggcgc gcccagctct gccgtgacct
     2821 cgacgggcgc gagccacacg agcgtcttta tgcggcaagt ccccgtgttg tcctcgcggc
     2881 agtagtagag cgtgagctgc gcgcggagcg tggccgcccc ttgcgagacg gcgcgcagcg
     2941 ggaggcggag tggtagcctc aggtctttcg cgctcctgac gggcgccacg ccttcgccga
     3001 gcgcgaggcg ccccgcgccc ggctcgaccg tgaccttgta gcggtgcggc gccgaggggt
     3061 tcaggtggtg gcccgtgggg agcgccacgt cgaagacgag agcggcgccg tcgcccgcgc
     3121 cgagccgctg cggcctgagc ttaatctctt ccgagtcagg cccggcgtcg gagcctgccg
     3181 ccgccgcctc ggcttcgcgc gcgggcggtt ggaggccgcg gatgacgaga gtggagacgg
     3241 ctttgctctt aaggtcaacg acgcgcacgg cgtggttatt cgtgtcggcg acgtagagca
     3301 ggccgcgctc gggcgcgacc gagaggccgc ccggctcgta gaacgagcct tctgcgccgt
     3361 ccgtctgtcc cgacttgcct gtcccgacga aagtcttcac ctgtcgcgtc gccgggtcga
     3421 gctgctttat cttgtggttg taggtgtctg ctatgaggag actgccggcg tggaacgcga
     3481 cgccgagcgg gtgttggagg cggacgtcgt cgccgcagcc gtcgcggtcg ccgaagtcga
     3541 agaggtcgcc gcccgcgagc gtctgaactt ctgcgccggc gccgccgtca gacagtttta
     3601 tggcccggat gatgttcgac tcgctgtctg cgacgtagag gctccgcccg tcgctcgcga
     3661 gccccgaggg ctgcgcgaag gccgactcgg cgcgcgcgcc gtctgtgcgc tcctcgcgac
     3721 ccgagccggc gaagaccgaa atctcccgcc tgtttagatc gagagcccaa atctggtgcg
     3781 ggccggccat cgcgacgtag agagtgcggc cggcgagcag caagtcccag ggcgagctga
     3841 gccgcgtcga gagcgcaggc ccgccgctca cgcggtagtt gcgtagctgc tcgcccgtgc
     3901 cggctatcgt ctctaccttg cgcgccttca agtcaacgcg gcgtatcagg tgattcgcgg
     3961 tgtcggcgac gaaaagcgtc tcgtcatcaa gagctagccc ttgcggccgg tggaagccgg
     4021 cgcggtcgaa cgcgccgtct gcgcggccgc gctcgcccgt gcctatcgtg taaagaagct
     4081 tgccgtcgag ccgggtcacc acgacgcggt tgtggttcga gtcggcgatg aagaggcggt
     4141 cgccgcgctc gtcggcgagg actttgccgg ggaaggcgag cggcaggtcg cccaccttag
     4201 cgcgctcgag cgcgagcttg agcggccgct cgtccagcgc gccgcgcttg cggaactcgt
     4261 tgacgagttc gccgatggcc gcgtcgagcg cctcgtagtg gccctcgccc gcgaccttgc
     4321 cgacgacata gccggccggg tcaatcagga cttgcgtcgg ccacgcgcgc acggcgtaag
     4381 cgttccatat gcggaagtcg gcgtcgttga cgacggggtg ctctatcccg tagcggagga
     4441 tgatgcggcg tatgttctcc gtctcgcgct cgttctcgaa cttggcggag tggacgccta
     4501 tgacgacgag ctggtcgcgg tactcctctt cgagccgctg gaggtcgggg atgacgtgca
     4561 tgcagtttat gcatccgtaa gtccagaagt ccaagagcac gaccttgccg cgcaggcgcg
     4621 cgagcgacag agccttgtcg gtgttgagcc agccgcgccc gccttccagc tccggcgcgc
     4681 gcacgcgccc ctcctgcctc acagtcacgc ccgcgccccc cctcgccccg cccgccgccg
     4741 taagcgacag gaagaggcaa gccagcagaa tcgtcatctt cgtcataaag ttcgcgtgcg
     4801 cacccgcgcc tagtgcgggt gctcgccggg cggcccgccc ccggcggttc cgccttctag
     4861 cagttggtcg agccggtcta tggcgcgccg caggtgcggg atcgttatcg agccgccgac
     4921 gacgagcgcg acgttgaagg cgtcgaggaa ctcctcgcgc gtgaccccca ggtcaacgca
     4981 ctgctttatg tggtacgtga cgcagtcgtc gcagcggagc acggccgagg ccgcgagccc
     5041 catcaactcc ttcgtgcgct tgtcgagcgc gccgtcctcg taggcctgcg tgtcgagcgc
     5101 gaagaagcgc ttgatgccga ggtggccgcc gcccagaagc ttctcgttca tcgcggcgcg
     5161 gtagcggtcg aattcgtcca tgaacagaaa ccctcccttt cgtccccgcg cgcgctcgcg
     5221 gcccgcacgg ctctcccgcg cgccgaagtt acgtggccga gtgccgcatc ggttttacac
     5281 gacagtttag cagaccgcgg cggccgccgc gttgacgcgc gagttttagg cgtgctagaa
     5341 ccgttcgcgc cccggccctc ttcgggaaag tgcccgccgg ccctccactt gcgacagatg
     5401 cgggaagacc acgaacaagt caccaacgcg cgcgggctgc tcgtcatcag cgcgggcggg
     5461 cgcctcttcg ccgtctatga gggcgaggcc gagtgcgtcg ccgaaggtct ccggccggcg
     5521 ccgctgccgc gcgcgccgcg cgcagtcctc ggggtcgtgt gcgtgcgggg ccgaatgcgc
     5581 acagtcctcg acccggccgc gctactgggc ggcgatgacg acgaggctgc cgtcaagaat
     5641 catgagccgg cgccgcgccg cgtcgtctgc ctgcgcggcg acgagcagct cgccctcgcg
     5701 gccgacagcg tcgagcacgc ccccgccccc cccgaagaag aggcggccgc ggccgacgag
     5761 ccccccctgc gcgcgactct cacgcacggc ggccgcacaa tctttctcct cgaccccgca
     5821 aaactcttcg aggctgccat ccacggctcc gagcgccgca ggcagaggga aaaaacctga
     5881 gcggtgaatc gtctaacgtg cggcttttgt ttattagccg cttacgattt accatctacc
     5941 gacgatgaac gagcaggcat tcgggacgct tgagtacgag ggtttgcgcg cgctcgtgcg
     6001 ccgctacgcg cagacgccca tgggcgcggc gcgcgccgac tcgctcgcgc cgctgggctc
     6061 ggtcgaagat gttcggcgcg cgctggcgcg cgtcacggag tgcgcggagc ttcgcaagcg
     6121 cggcgtgcgc tggtctttct cggggctcga agacccttcc gacgcgctcg cgcgcctcgc
     6181 catcgagggc gcgatcctcg acccgctcgt gctcttggag cttgcgcgac tgtgcgagca
     6241 ggcggccgac gcccgcgcct ccctctcggc cgagcgcgag gctgcgcccg cgctctggga
     6301 ggtggtcgaa caactcccgc gcacgctccc ggcgctcgcc gcgcgcgtct tctcgaaaat
     6361 tcttccgggc ggcgaattgg acgaccgcgc gagccccgag cttgcgcgca tacgcgcgga
     6421 catcgtgcgc ctgcgctcct cgataactcg ctcgctcgaa ggcctgatgc gccgctcgga
     6481 ggaggcgatt caggacgcgc tggtgacgct gcgcaacgac cgcttcgtca tccccgtccg
     6541 cagcgaccac cgcggccgca tcgcgggagt cgcgcacggc ttctcctcct cgggcgccac
     6601 cgtcttcgtc gagccgcttg agaccatcga gtcgaacaac gagcttcagg cccttcgcga
     6661 gaccgaggag cgcgaggtcg cgcggatact cctcacgctc gcggaagaac tgaggcaaga
     6721 gttgccggcg atagggctcg cggcctcggc ggtcgccgag ctggacttcg tcaacgcgaa
     6781 ggcagcgctc gccgcgcaca cccgcgcggt cgggccggtc gtcggcgagg acgagacgct
     6841 cgagctggtc gaggcgcggc accctctgct cgaagagagc ttgcgcgagc agggcggcga
     6901 ggtagtgccg gtctccttcc gcttagaccg agagcgccca gtcatggtca tctcgggcgc
     6961 gaacgcgggc gggaagaccg tcgtcctgaa gacggcgggg ctgctgtccc tgatggcgct
     7021 ctcgggcctc cacgtccccg cgcgagaggc gcggttcccc ttctacgcct cagtgctcgc
     7081 ggacataggc gaccgccagt cgctcgccgc gaacctctcg accttcacct ctcacgtcgc
     7141 aaacatacgc agcatgatgg agctgtgccg cccgcccgcg ctcgtcctcc tcgacgaggt
     7201 aggcacgggc acagaccccg aagagggctc ggcgctaggc gtcgccgtcg ttgaccactt
     7261 ccgccgcgcg tgcggcgcgc aggtcatagc gactacgcac tacggcgggc tgaagatgta
     7321 cgcggcgaac gaggagggcg tccagaacgc gagcgtcgag ttcgacgagc gcaccttgca
     7381 gccgacctac cgtctgctcg tcggggtcgc cggctcctcg tctggcctgg agatcgcgcg
     7441 ccgcttccgt ttgcccgagg aggtcgtatc gaacgcgcgc tctctcgtct ccgaaaacac
     7501 cctcgccgcg gccgactacc tgcgccgcat acagcgcgag gcagaggagg ccgaggcgct
     7561 gcggcgcgcg ctcgaagaag agcggcgcgc cgtcgcggag gagtacgccg cgctcgaatc
     7621 ggtcgcgcag aagcgcgagc gcgagcggca ggccgagttc gcgcgcgcgc tcgagcgctc
     7681 ggtcgccgac ttcgagcgcc gcgcgcgcga gctttacgaa aaggtcgaag accgcgccgc
     7741 ccgcgcccgc gtcgagcgcg aggccgagcg ccgtgccgca gagctcaggc gcgaggcgca
     7801 gcagcagcgc gcgcagtcgc gcgccgcctc cgcgcagcgc ggcggggagc ccggcggcgt
     7861 ccgcgtcgtc aggcacgggc gcgacccgga ggcggcgcag ccttcatcaa cgaccgacgc
     7921 gcccgcgcgc gagccggccg tgggcgacac cgtgcggctg gcctcgctcg gcgccacggg
     7981 aacggttgag cgcataagcc cgagcggcga ggccgaagtg cgcgtcggca acctccggtt
     8041 ccgcgagaag ctctcgaacc tcgagaccgt aggccccgcg cgcccggcgc cggccgaaag
     8101 ggacgacggc tcgctcgccg cgcgcctgcg cggcatgagc cggcgcggca cagaggtgcg
     8161 gctcactcag tcgcgcgagg cgcccgacgc cgagataaac ctcatcggca agtccaccga
     8221 cgaggcgcgc gacgagaccg acaagttcct cgacgaggcg tacctgcacg gccacgcgcg
     8281 cgtccgaatc atccacggcc acggcacggg cgcgctgcgc cgcgccgtcg cagagctttt
     8341 gcgcagccac ccgc
//
LOCUS       DASPKR010000770         3821 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1288717, whole genome shotgun sequence.
ACCESSION   DASPKR010000770 DASPKR010000000
VERSION     DASPKR010000770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3821)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3821
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1288717"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>3821)
                     /locus_tag="VD968_20140"
     CDS             complement(<1..>3821)
                     /locus_tag="VD968_20140"
                     /inference="COORDINATES: protein motif:HMM:NF019323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004866 - endopeptidase inhibitor activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HYE16761.1"
                     /translation="KFSTPPPKLARKFPEGGPVRRDPVVFIEFDQKIDPEAVLRKLTL
                     RAGGQALGARLATPEEIAADESVKSLAASAVEGRWLAVRAASAQLPQASLVTVSVGAG
                     TPSAEGPRVTTTAQEFSFRTFGPLRVTGTQCGWQRRCTPFDTWQIEFTNPLDQKAFDK
                     SQVRFEPELPGAQIQIYGSMMHVAGAKRGRTTYKVTFDRSLRDVFGQTLEGPASVTFN
                     VGAAEPGLVTTGDWFAVIEPSARPAYSVYSINHDSLKVSIYKVAPEQWHDFVAYMRGV
                     NNYYDARRGGAAQTAPPGKLVFSKAVAVKAQPDELVETPIDLAPALEGGLGNAVVIVE
                     PAVRTAVTRRDRQVVRVWAQVTGIGLDAFADQKELVGWATSLRDGRPLAGVELGLLPS
                     GARGRTGADGLARMPLPDAEAPAGNVLVARSGGDTAFITDLYYWGAGGRWRKTEARDT
                     LRWYVFDDRKMYRPGEEVSVKGWIRRVGAGEGGDVGALDGAAEVVNYVVRDSRGNEIG
                     KGSAQLNALGGFDTRFKLPAGVNLGRSHIQFDAGGGQAVEGRQYHHHFQIQEFRRPEF
                     EVTAQASEGPHFVGSHADATVSANYYAGGGLAGAEVTWNVTASPAQYTPPNRGDFTFG
                     RWVPWWGWRGAQRREGETTTQTFGGRTDASGKHRLRIDFDSVRPPQPSTVTATASVAD
                     VNRQQWAGTTTMLVHPADIYVGIRSPRTFVQQGEPLIVESIVTDLDGRLIPGRDVRVR
                     AALLEWVQEKGEWKQKETPLEDCALKSGGEPVKCTFRPKAGGTYRVTATVLDDRERPN
                     ESELTLWVAGGRRPAARGVEQESVDLIPDRKEYRAGETAEILVQAPFFPAEAVMTLRR
                     SGLVRTERFRMDEPTRTLKVPIEEAFTPNVHVQVDLVGATARLGAGGEPDEKLPKRPA
                     FASGSLDLSVPPLARKLRVTATPREAAVEPGAETSVSVEVRDASGSAVRGSELAVVVV
                     DESVLALTGYKLEDPVSVFYARREPGVSDHHLRSELVLVNPEMLETVNVQSISELPVN
                     ARMAPPPPSAGAMADEAEAVGFVQMKARGRASNTSGLMLGGAAPGGDDAAIRLRENFN
                     ALAVFAPSVLTDSSGRAEVKVKIPDNLTRYRVMAVSVAGGKQFGSGESSITARVPLMV
                     RPSAPRFLNFGDRFELPVVVQNQTDKPLVAEVAARASNAEFTDGAGRRVTVPANDRVE
                     VRLPAAAARAGVARFQVGAVSGRFADAAQVELPVWTPATTEAFATYGELDGNAAVVQP
                     VRAPSGVLTQF"
BASE COUNT          525 a         1358 c         1336 g          602 t
ORIGIN      
        1 cgaactgcgt cagcacgccc gagggcgccc tgacgggctg cacgacggcg gcgttgccgt
       61 cgagctcgcc gtatgtggcg aacgcctcgg tcgtcgcggg agtccagacc ggaagctcca
      121 cctgcgcggc gtccgcgaag cggcccgaca cggcgccgac ctggaagcgc gccacaccgg
      181 cgcgagcggc cgcggccggg agcctgactt cgacgcggtc gtttgcgggg acggtgacgc
      241 ggcggccggc gccgtcggtg aactcggcgt tcgaggctcg cgcggcgacc tcggcgacga
      301 gcggcttgtc cgtctggttc tgcacgacga cgggcagctc gaagcggtcg ccgaagttga
      361 ggaagcgcgg cgccgacggg cgaaccatca gaggcacgcg cgccgttatc gagctctcgc
      421 ccgagccgaa ctgcttgccg cccgcgaccg aaacggccat gacgcggtat cgcgtcaggt
      481 tgtcggggat tttgaccttg acctcggcgc ggccggatga gtcggtcagg acggacgggg
      541 cgaagacggc gagcgcgttg aagttctcgc gcaggcggat ggcggcgtca tcaccgccgg
      601 gcgcggcgcc gcccagcatg agaccgctcg tgttggacgc cctccccctc gctttcatct
      661 gcacgaagcc gacggcttcc gcctcatcgg ccatggcccc cgcgctcggg ggcggcggcg
      721 ccatgcgcgc gttcacgggc agctccgaaa tggactgcac gttgacggtc tccaacatct
      781 cggggttgac gagcacaagc tcgctgcgca ggtggtggtc gctcacgccc ggctcgcgcc
      841 gcgcgtagaa gaccgagacg gggtcttcga gcttgtagcc cgtcagagcg agcaccgact
      901 cgtccacgac aacgaccgca agctcgctcc cgcgcacggc gctgcccgat gcgtcgcgca
      961 cctcgacgct aacgctcgtc tcggcgcccg gctcgacggc cgcttcgcgc ggcgtcgccg
     1021 tcacccgaag ctttcgcgcg agcggcggca cagagaggtc gagcgagccc gacgcgaacg
     1081 cgggccgctt cggcaacttc tcgtccggct cgccgccggc gcccaaacgc gccgtcgcgc
     1141 cgaccaggtc aacctgcacg tgcacgttcg gcgtgaacgc ctcctcaatc ggcactttga
     1201 gcgtgcgcgt cggctcgtcc atgcggaagc gctccgtgcg gaccagccct gagcgcctga
     1261 gagtcatcac ggcctcggcc gggaagaaag gcgcctgcac gagaatctcc gccgtctcgc
     1321 ccgcgcgata ctccttgcgg tcggggatta ggtcaaccga ctcctgctcc acgcctcgcg
     1381 cggccgggcg cctgccgccc gctacccaga gcgtcagctc gctctcgttg ggacgctcgc
     1441 ggtcgtcgag cacggtggcg gtcacgcggt aggtgccgcc cgccttcggg cggaaggtgc
     1501 acttgacggg ctcgccccct gactttagcg cgcagtcctc aagcggcgtc tccttctgct
     1561 tccactcgcc cttctcctgc acccattcga ggagcgccgc gcgcacgcgc acgtcgcgcc
     1621 ccggaatgag gcggccgtcg aggtcggtga cgatggactc gactatgagg ggctcgccct
     1681 gctgaacgaa cgtgcgcggg ctgcgtatgc cgacgtagat gtctgcgggg tgcacgagca
     1741 tcgttgtcgt gcctgcccac tgctgccggt tcacgtcggc gacgctggcg gtcgccgtca
     1801 cggtcgaggg ctgcggcggg cgcacggagt cgaagtcaat gcggaggcgg tgcttgcccg
     1861 aggcgtcagt cctcccgccg aaggtctgcg tggtcgtctc tccctcgcgc ctttgcgcgc
     1921 cgcgccagcc ccaccacgga acccagcggc cgaaggtgaa gtcgccgcgg ttcggcggcg
     1981 tgtactgcgc cgggctcgcc gtcacgttcc aagtgacttc ggcgccggcc agcccgccgc
     2041 ccgcgtagta gttcgcagag actgtcgcgt cggcgtgcga gccgacgaag tgcggcccct
     2101 cgctcgcctg cgccgtcacc tcgaactcgg gccggcgaaa ctcctgaatc tggaagtggt
     2161 ggtgatactg gcggccctct acggcctggc ctccgcccgc gtcgaactgt atgtggctgc
     2221 ggccgaggtt cacgccggcc ggcagcttga acctggtgtc gaagccgccg agcgcgttga
     2281 gttgcgccga gcccttccct atctcgttgc cgcgcgagtc gcgcacgacg tagttaacga
     2341 cttcggccgc gccgtccagc gcgccgacgt cgccgccctc gcccgcgccg acgcgcctga
     2401 tccagccctt gacgctaacc tcctcgccgg ggcggtacat cttcctgtcg tcgaagacgt
     2461 accagcgcag cgtgtcgcgc gcctccgtct tccgccagcg cccgcccgcg ccccagtagt
     2521 agaggtctgt gatgaaggcg gtgtcgccgc cgctgcgcgc tacgaggacg ttgccggccg
     2581 gcgcctcggc gtcgggcagg ggcatgcgcg cgaggccgtc ggcgcccgtc cgcccgcgcg
     2641 cgcccgaggg caggaggccc agctcgacgc ccgcgagcgg gcggccgtcc ctgagcgaag
     2701 tcgcccagcc caccaactcc ttctggtctg cgaaggcgtc gaggccgatg cccgttacct
     2761 gcgcccagac gcggacgacc tgtcggtcgc gccttgtcac ggccgtccga acggcgggct
     2821 cgacaatgac gacggcgttg cccaagcccc cttcgagggc gggcgccagg tcaatcggcg
     2881 tctcgaccag ctcgtcgggc tgagccttca cggctacggc cttcgagaag acgagtttgc
     2941 ccggcggggc cgtctgcgcc gctccgcccc gtctcgcgtc gtagtagttg ttcacgccgc
     3001 gcatgtaggc gacgaagtcg tgccactgct cgggcgcgac cttgtagatg ctcaccttca
     3061 ggctgtcgtg gttgatgcta tagacggagt aggcgggcct ggccgaaggt tcgatgacgg
     3121 cgaaccagtc gcccgtcgtc acgagcccgg gctcggcggc gccgacgttg aaggtcacgc
     3181 tcgcggggcc ttcgagcgtc tgcccgaaca cgtcgcgcag cgagcggtcg aaggtgacct
     3241 tgtaagtcgt gcgcccgcgc ttggcgcccg cgacgtgcat catcgagccg tagatttgaa
     3301 tctgcgcgcc gggaagctcc ggctcgaagc gcacctgcga cttgtcgaaa gccttctggt
     3361 cgagcgggtt cgtgaactct atctgccaag tgtcgaaggg cgtgcagcgg cgttgccagc
     3421 cgcactgcgt gcccgtgacg cgcagcgggc cgaaggttct gaaggagaac tcttgcgccg
     3481 tcgtcgtcac tctcggcccc tcggcagaag gcgtgccggc tcccacggag accgtgacga
     3541 gcgaggcctg cgggagctgc gcgctcgcgg cgcgcacggc gagccagcgg ccctcgaccg
     3601 ctgaggccgc cagagacttt acgctctcgt cggccgctat ctcttcgggc gtggcgagcc
     3661 gggcgccgag ggcctgcccc cccgcgcgca aggtgagctt gcggagcacg gcctcggggt
     3721 caatcttctg gtcgaactcg atgaagacga cggggtcgcg gcgcacgggg ccgccttcgg
     3781 ggaatttgcg ggcgagtttc ggcggcggcg tcgagaactt c
//
LOCUS       DASPKR010000771         3379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1802329, whole genome shotgun sequence.
ACCESSION   DASPKR010000771 DASPKR010000000
VERSION     DASPKR010000771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3379)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3379
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1802329"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..837
                     /locus_tag="VD968_20145"
     CDS             <1..837
                     /locus_tag="VD968_20145"
                     /inference="COORDINATES: protein motif:HMM:NF025114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HYE16762.1"
                     /translation="AMTAQKLGLSYVAIEQDRVLATIEAYPANKYVFFKPETMEARGG
                     VRPDGAGAQREAILEAWAAAMREAGVRVNELESCKTVKRAEDGDYFTVETEQGPEKRR
                     VSYNARRVVLALGNRGTPMKLRVPGEELKVVRDGRAEDKVRYKLTDPEEFRRKRIVVV
                     GAGNSAIEAAVDLVARRDGDRITFRPDHEINEVTLVIRSDMKNDLKFGNKLQVYDCID
                     EGKIKVFFGTSIKEIREGEVVLMNARTEEVKATIPNDYVFAMIGGDRPTKFLESIGIK
                     IG"
     gene            complement(912..1430)
                     /locus_tag="VD968_20150"
     CDS             complement(912..1430)
                     /locus_tag="VD968_20150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE16763.1"
                     /translation="MGKALTACLAAALALLAAACGQSEAPKAGAAANGGAQTSASANR
                     PKGSSGDVGVVSSHGGASQSPQGGGDGAADRALVDTKELDARIKKAADKAKASGASAA
                     DKKEAADAYLARGNVYYEAGQPRLYKYALADFRQVLRFDPSNKEAEEKIDMIESIYKG
                     MGRPVPEVSAEQ"
     gene            complement(1545..2144)
                     /locus_tag="VD968_20155"
     CDS             complement(1545..2144)
                     /locus_tag="VD968_20155"
                     /inference="COORDINATES: protein motif:HMM:NF014176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HYE16764.1"
                     /translation="MKLFIVSAAVLCYLCFAFGCNSSALKSGAGALVAEGSKTPKDEY
                     KLSTDSKKDKAKSLPVTFSHVNHATKNYSIDGTKTIGCTECHHTEQPAAEAEKRPPLK
                     TAYPVDRTVALTAETAKDAKTPDVIACRSCHAQEGQTPKIGGELPQVTYEGDTDPTIL
                     SNEEAYHRNCNGCHDQAVEARKNIKAPTTNDCKNCHTGP"
     gene            complement(2258..3142)
                     /locus_tag="VD968_20160"
     CDS             complement(2258..3142)
                     /locus_tag="VD968_20160"
                     /inference="COORDINATES: protein motif:HMM:NF025875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HYE16765.1"
                     /translation="MEIGSKKISPRARIGASAAALFAVAVGALALASPARPDAAATTA
                     GGTGFARTALVAAAFQGGFSHSTPRHAEQSCDNCHRREGASPRPALPGHKSCDDCHIQ
                     EFMTSGSQFCATCHTDMGQARPPLKAFPPLRSFNARFDHAKHTGGAGRPEAGCSSCHL
                     PARRGVALSIPAGAGAHENCYQCHTPGSSAGGLSSCSSCHAPGRFSRTPTNARAFAVG
                     FSHAAHGPRQRLSCDRCHTVRAGAAQGRQVSSPAPTQHFGSARAQTCMTCHNNRRAFG
                     GEDFADCKRCHKGQTFRF"
     gene            complement(3158..>3379)
                     /locus_tag="VD968_20165"
     CDS             complement(3158..>3379)
                     /locus_tag="VD968_20165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16766.1"
                     /translation="QSRLGPDTLDVPIQTCSTSSCHGGTSPSKKGIILREVERRRKPD
                     GAGYECAKCHVNFGKAPTPKSHADLFPAK"
BASE COUNT          531 a         1069 c         1199 g          580 t
ORIGIN      
        1 gcgatgactg cccaaaaact cggcctctcc tacgtggcaa tcgagcagga cagggtgctc
       61 gcaaccatcg aagcctaccc ggcgaacaag tacgtcttct tcaagcccga gacgatggag
      121 gcgcgcggag gcgtccggcc cgacggcgcg ggcgcgcagc gcgaggccat cctcgaagcg
      181 tgggcggcgg cgatgcgcga ggccggcgtg cgcgtgaacg agcttgagag ctgcaagacg
      241 gtgaagcgtg cggaggacgg cgactacttc accgtcgaga ccgagcaggg gccggagaag
      301 cggcgcgtga gctataacgc ccgccgcgtc gtgctcgcgc tcggcaaccg agggacgccc
      361 atgaaactgc gggtgccggg cgaggagctg aaggtcgtgc gcgacgggcg cgccgaagac
      421 aaggtcaggt acaagctcac tgacccggag gagttcaggc ggaaacgcat cgtcgtcgtc
      481 ggcgccggca actctgccat cgaggcggcg gttgacctcg tcgcccggcg cgacggcgac
      541 cgcatcacct tccgccccga ccacgagata aacgaagtca ccctcgtcat acgcagcgac
      601 atgaagaacg acctgaagtt cggcaacaag cttcaggtct atgactgcat agacgagggc
      661 aagattaagg tcttcttcgg gacttcgata aaggagattc gagagggcga ggtcgtgctt
      721 atgaacgcgc gcaccgagga ggtaaaggcg acgataccga acgactacgt cttcgccatg
      781 atcgggggcg accgcccgac gaagttttta gagtcaatcg ggataaagat cggctagcac
      841 gcttgcgaat taaagagggt cggcggaagc cgtgctgtcg ccgaccctct tccatccgcc
      901 cgcaattccc tttactgctc ggcgctcacc tcggggacgg ggcggcccat gcccttgtag
      961 attgactcga tcatgtcaat cttctcctcg gcctctttgt tggaggggtc gaagcgcagc
     1021 acctggcgga agtctgcgag cgcgtacttg tagaggcgcg gctggccggc ctcgtaatag
     1081 acgttgccgc gcgccaggta ggcgtcggcc gcctccttct tgtcggctgc gctcgcgccc
     1141 gaagccttcg ccttgtcggc ggccttcttg atgcgcgcgt ccagctcctt cgtgtcaacg
     1201 agcgcacggt ctgcggcccc gtcgccgccg ccctgcgggc tctgcgaggc gccgccgtgc
     1261 gaagagacca cgcccacgtc gcccgatgag cccttcggcc tgttagcgga ggcggaagtc
     1321 tgcgcgccgc cgttcgctgc ggcgcccgcc ttcggcgcct cagactggcc gcaggccgcg
     1381 gcgagcagtg cgagcgcggc cgcgaggcag gccgtcaaag ctttccccat cacctttaac
     1441 tcctgaactt ttgatttgag accggccccg tgatgataca caaagagcgc ccgccgagtc
     1501 actcggcggg cgctctcgcc tttcgacact cgccgcgcgg gcggtcacgg gccggtgtgg
     1561 cagttcttgc agtcgttcgt cgtcggcgcc ttgatgttct tgcgggcctc gacggcctgg
     1621 tcgtggcagc cgttgcagtt gcggtggtac gcctcctcgt tcgagaggat ggtcgggtcg
     1681 gtgtcgccct cgtatgtcac ctgcggaagc tcgccgccta tcttcggcgt ctgcccctcc
     1741 tgagcgtggc acgagcggca ggctattacg tcgggcgtct tggcgtcctt cgcggtctcg
     1801 gccgtgagcg ccacggtgcg gtcgaccggg taggcggtct ttagcggcgg gcgcttctcg
     1861 gcctcggcgg cgggctgctc ggtgtggtgg cactcggtgc agcctatagt cttcgtgccg
     1921 tcaatgctgt agttcttcgt cgcgtggttt acgtggctga aggtgacggg caggctcttg
     1981 gccttgtcct tcttcgagtc ggtcgagagc ttgtactcgt ccttcggcgt cttactgcct
     2041 tcggccacga gcgcgcccgc gcccgacttg agcgccgacg agttgcagcc gaatgcgaag
     2101 cacaggtagc acaggacggc cgccgagacg atgaatagtt tcataaatcc ttccccagag
     2161 agttcggact gtagagaccg gcgagattga aagagccttt acgacggggg agatggccga
     2221 atcatagaca ccgcacgcgc ccctgtcaaa aaaattttca gaaccggaac gtctggccct
     2281 tgtggcagcg cttgcagtcg gcgaagtcct cgccgccgaa ggcgcgccgg ttgttgtggc
     2341 acgtcatgca agtctgggcg cgcgccgagc cgaagtgctg ggtcggcgcg ggcgagctga
     2401 cctggcgccc ttgcgcggcg cccgcgcgca cggtgtggca ccggtcgcag ctaaggcgct
     2461 ggcgcgggcc gtgcgcggcg tggctgaagc ccacggcgaa ggcgcgcgcg ttagtcggcg
     2521 tgcgggagaa gcgccccggc gcgtggcacg aggagcacga cgagaggccg ccggccgaag
     2581 agccgggcgt gtggcactgg tagcagttct cgtgagcgcc cgccccggcc gggatggaga
     2641 gcgcgactcc gcgccgcgcg ggcaggtggc aggaagagca gccggcctcg gggcggccgg
     2701 cgccgccggt gtgcttcgcg tggtcgaagc gcgcgttgaa gctcctgagc ggcgggaaag
     2761 ccttgagcgg cggccgggcc tgccccatgt ccgtgtggca ggtggcgcag aactgcgagc
     2821 ccgaagtcat gaactcctga atgtggcagt cgtcgcaaga cttgtggccg gggagcgcgg
     2881 gccgtggcga agcgccctcg cggcggtggc agttgtcgca cgactgctcg gcgtgcctcg
     2941 gcgtcgagtg ggagaagccg ccctgaaacg cggcggcgac tagcgccgtg cgggcgaagc
     3001 ccgtgccgcc ggcagtagtc gccgcggcgt ccgggcgcgc gggcgacgca agcgcgagcg
     3061 ccccgactgc gacggcaaac agcgcggccg ccgaggcgcc gatgcgcgcg cgcggagaga
     3121 tttttttgct ccctatttcc atcctgtcag ggccggctca cttggccggg aagaggtctg
     3181 cgtgcgactt cggcgtcggg gccttgccga agttgacgtg gcacttggcg cactcgtaac
     3241 cggcgccgtc gggcttcctc ctgcgctcca cctcgcgcag tatgatcccc ttcttcgagg
     3301 gcgacgttcc gccgtggcaa cttgaggtcg agcaggtctg aatcggcacg tcgagcgtgt
     3361 cggggccgag gcggctctg
//
LOCUS       DASPKR010000772         8543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_769322, whole genome shotgun sequence.
ACCESSION   DASPKR010000772 DASPKR010000000
VERSION     DASPKR010000772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 8543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8543)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8543
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_769322"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VD968_20170"
     CDS             <1..240
                     /locus_tag="VD968_20170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16767.1"
                     /translation="EFAAVGRMKQLAGQFTKGLPGGARFRQVIYHSHSVGEVLDRIGE
                     YFETVAAGRFYVGEGTEPEEEAPALDSCEAATTTF"
     gene            complement(325..2082)
                     /locus_tag="VD968_20175"
     CDS             complement(325..2082)
                     /locus_tag="VD968_20175"
                     /inference="COORDINATES: protein motif:HMM:NF020252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HYE16768.1"
                     /translation="MPYKIMVVDDEPANLRLLERLFRRDYQVLSAGSGQEALRLLEQH
                     DVALLITDQRMPGMTGIELLKRAAELRPHMVRIILTGYTDMEALVEAINCGQVYRYAT
                     KPWNNDDLRLTAARALEHYEATRGQHELARANERLQARLLEMTRGFVRTIADALEAKD
                     EYTHGHARRVSGYAAAIGRRMGLRDSELEQLTLAALLHEIGKIATPDRILLKPDALTE
                     EERSIVRQHAERGARMLSGVPEMEEVAAAVRHHHEHWDGTGYPEGLSGEMIPLASRII
                     HVAAAYDAMTSPRSFREACDHERALTTLERQSGAQFDPAVVSAFFELEALSEIRRRVS
                     PDTWAGLTHDSAFSLSDREPTLEELRAEVERDPVLAARVLHEANTKYTAPPTARLGEA
                     CSRIGGARLSALVASVGTRELGEGPERAAWERSLRAAEAARLIAERTGIIDGDEAYTL
                     GLLQDVGETLLSALFPEEAATLEGLAPEARVEQEVALFGVDHAQVGQWALEAAGLPRT
                     LAAAVQAHHDALRINAPVALLLHMADAVARMEDYYNFAALDALGSDRLAMLGLSRAAL
                     ADIHSRTSALHELRLAPLS"
     gene            complement(2107..3432)
                     /locus_tag="VD968_20180"
     CDS             complement(2107..3432)
                     /locus_tag="VD968_20180"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYE16769.1"
                     /translation="MSHAPHATLQAGAAGLAAPQVEKPDRSLLIVDDDEAVRTLFSDC
                     LGARYYCSTAANAEQALALLARREFALVLTDVLMPGLGGVELLRRVITQHPDTAVIMV
                     SGIDRTQRVLDAVRIGASDYLLKPVDLHVLELSVERALERRALLRDARRYKQDLERRN
                     SELARRKAELERLQAQIVHSEKMASLGQLAAGVAHELNNPAGFIYGNMDFLAEGVEAV
                     ERLLALYDASDLPEPLGASVAELKREIDYEATLSDLRSIINDCRDGADRIRSVVQNLR
                     TFSRLDEAEFKKVDIHEGIDSSVRLLSRYYSGGAIRLRREYGELPLVDCYAGQLNQVW
                     MNLLANAAQAVEARGGGEVVIQTYMEKGTVHVAVTDTGCGIAAEHLRKIFDPFFTTKP
                     VGEGTGLGLSVTYSIVERHGGFIRVRSRVGEGTTFVVGLPVCARPGGTE"
     gene            complement(3726..7019)
                     /locus_tag="VD968_20185"
     CDS             complement(3726..7019)
                     /locus_tag="VD968_20185"
                     /inference="COORDINATES: protein motif:HMM:NF016071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPC domain-containing protein"
                     /protein_id="HYE16770.1"
                     /translation="MRKKLTLAAVSCFMAALLASTPSLASFGARGAARAGAPERQSPA
                     PAAQEMGDPKSLVGRGQAMAGTAYAVAKADVNHGAVSAKPAITAAQMVERQEHEEESP
                     EASLPEGPPAPPATISPPTEADGGVSKAMAEVGLQQQAPDDLVFFKSHNFTPEEVPTS
                     QRATVLEPTAVNAGDAVFYTANWYAAKSADGGSTFTYINPYSFFPPVNGGFCCDQVTA
                     YAPAQDMILWGLQYREDTSTGTFRLARAVGGAGLATNSWVYWDFTPQAVGFGVGDWFD
                     YPSMTVGSSFVYITSNVFTQGGFFSGAAVMRVPLAELAAGTGFSYNYFTSDNTGTFRC
                     TEGAATTMYCIAFANSHQIRVHKWPDSENLIYYDYVQLSYFTRMSRDGEAVSPDGSNW
                     AARADSRPVAAYVAGGVIGVMFNARQDTDFPFPYVVHVRLSEANGALISQGQIWNPRY
                     AFLYPTASPNASGHLAGTLQVGGGSADDGFPYPGTQVWVSDDVQTGGATVGGLHFLAG
                     GTAGPSNNAWGDYFSVRSHKDYTDTWVVTAHTLQGGRTGSFAVPNYSWVGREKDGPGL
                     TCPAPSPIGVGQTLDGALATTDCALGGGRYYDDYTFAGSAGQQVSVSLNSSAFDAYLY
                     LLGPGGSAVAEGDGGGGGTNARIPDGGGLFTLPSAGTYTIRATSAAAGATGAYSLTLA
                     AGEMGGGAGLQYYPLPSPVRLLDTRAGQAACQNPGTPLAAGSTRAQQARLTCGGVTIP
                     ASAQAIAGNATVVNNLQGAGPGFVTLYSSGASRPNVSNINYTAGQVLSNAFTVGLGAG
                     GAFNVFALSTTDFIVDVTGYYAPPGAGGLYFHPLPRPVRLLDTRAGQAACDAPGAPIA
                     AGMTRTEAARRTCDGLVIPDDALAVVGNATVVNNLQGSGPGFITLYPSGSARPGVSNI
                     NYTAGQVLSNAFAAGLGGDGAFKIFALSTTDLIVDVSGYFSNSAAADANGVAGLLYNP
                     LPSPFRLLDTRPGEPACYNPGAPLGAGATRTQAARGTCGPIIVPAGALAVVGNSTVIN
                     TAAGAGFGYVTLYPSGAARPLVSNLNYGPGQVLSNHFTVSLGGDGAFQIFPFSTTHFI
                     ADVNAYYAP"
     gene            complement(7196..8440)
                     /locus_tag="VD968_20190"
     CDS             complement(7196..8440)
                     /locus_tag="VD968_20190"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYE16771.1"
                     /translation="MDASEERDAESARIVIVGGGFGGLFTALGLAGAGQVTLVSNEDH
                     FLHTPLLYEYLSGEVEAWHIAPRYGELLDDRVQFVQGAVTGVDFGSREVSVAGRVRKL
                     AYDYLVLAVGGVTNFWGVEGAEQHALPFRKIRHADDLRRRMIEALDRIQPDAAPQDAQ
                     RAATFVVVGGGASGVELSTKMADLLRDAFRRRGLHGEPRVLVVEMGKGLVPTMGADLR
                     EVVEEVMREKRVDVHTETRVVKVLPRGVVLEHAGEQATVESAGTVWTAGVRVNPLVER
                     LDAEKTQRGQLVVEPTLQLRGRPGVFALGDVAFFPDIVPSLAGTAQLAFQQSALAAAN
                     VQALIDGSVPSARRFEELGEAVSLGTDDAAVLTAGRVIEGRLARQARFALYTTRLPTW
                     HHRLRVGAAWFFGGKSPRPLGL"
BASE COUNT         1241 a         2852 c         3151 g         1299 t
ORIGIN      
        1 gagttcgccg ccgtcggccg catgaagcag ctagccggcc agttcacgaa gggcctgccc
       61 ggcggcgcgc gcttccggca ggtcatatac cattcgcact ccgtcggcga agtgctcgac
      121 cgcatcggcg agtacttcga gacggtagcg gccggccgct tctacgtcgg cgaagggacc
      181 gagccagaag aggaagcgcc cgcactcgac tcgtgcgagg cggcgacgac gaccttctaa
      241 cgagcgcgcg cgaaagggga gcggcggccg cgcggcccgg tgcctgaagc cgggccgcgc
      301 ggccgccgcg ttttgcgccc cgctctagct taggggggcg aggcgcaact cgtgcagggc
      361 ggaggtgcgt gagtgtatgt cggccagcgc cgcgcggctc aggcccagca tcgccagtcg
      421 gtcggagccg agcgcgtcga gcgcggcgaa gttgtagtag tcctccatgc gcgcgacggc
      481 gtcggccatg tgcaggagga gcgcgacggg cgcgttgatg cgcagcgcgt cgtggtgcgc
      541 ctgcacggcg gcagccagtg tgcgcggcag ccccgcggcc tccagggccc actgaccgac
      601 ctgcgcgtgg tcaacgccga agagcgcgac ctcttgctcg acgcgagcct cgggcgcgag
      661 cccttcgagc gtggcggcct cttctgggaa gagcgccgac aggagcgtct cgcccacgtc
      721 ctgaagcagc cctagcgtgt aagcctcgtc cccgtcaatt atcccggtgc gctccgctat
      781 gagccgcgcg gcctctgcgg cgcgaagcga gcgctcccac gccgcgcgct ccgggccttc
      841 gcccaactcg cgagtgccga cgctcgccac gagcgcggag agtcgcgccc cgcctatgcg
      901 cgagcacgcc tcgcccagcc gcgccgtcgg cggcgccgtg tacttcgtgt tcgcctcgtg
      961 cagcacgcgc gcggcgagca cggggtcgcg ctcgacctcg gcgcgcagct cttcgagcgt
     1021 cggctcgcgg tcgctcaagg agaaggctga gtcgtgcgtg agccccgccc acgtgtcggg
     1081 ggagacgcgg cggcgtatct cggagagcgc ttcgagctcg aagaaggccg agacgaccgc
     1141 cgggtcgaac tgcgcgcccg actgtcgctc gagtgtggtg agcgcgcgct cgtggtcgca
     1201 cgcctcgcgg aacgagcgcg ggctcgtcat cgcgtcgtag gccgcggcga cgtggatgat
     1261 gcgcgacgcc agggggatca tctcgcccga gaggccctcg gggtagcccg tgccgtccca
     1321 gtgctcgtgg tggtggcgca cggccgcggc gacctcctcc atctcgggca cgcccgagag
     1381 catgcgggcg ccgcgctcgg cgtgctggcg gacgatagat cgctcctctt cggtgagcgc
     1441 gtcgggcttg aggagtatgc ggtcgggcgt agctatcttg cctatctcgt gcagcagcgc
     1501 cgcgagcgtg agctgttcga gctccgagtc gcggaggccc atgcggcggc cgattgcggc
     1561 tgcgtagccg ctcacgcggc gggcgtggcc gtgcgtgtac tcgtcctttg cttcgagcgc
     1621 gtcggcgatc gtgcggacga agccgcgcgt catctcgagc agccgcgcct gaagccgctc
     1681 gttggcgcgc gccagctcgt gctggccgcg cgtggcctcg tagtgctcga gggcgcgggc
     1741 ggccgtgagc cgcaggtcgt cgttgttcca gggcttcgtc gcgtagcgat agacctgccc
     1801 gcagttgatg gcctcaacga gcgcctccat gtccgtgtag cccgtgagga ttatcctgac
     1861 catgtggggc cgaagctcgg cggcgcgctt aaggagctcg atgccggtca tgccgggcat
     1921 gcgctggtcg gtgatgagca gcgcgacgtc gtgctgctcc aggagcctca gagcctcctg
     1981 gccggagccc gcgctcaaaa cctgatagtc gcggcggaag agtcgttcga gcaggcgcag
     2041 gttcgcgggc tcgtcgtcaa cgaccattat tttgtagggc atcgtgggga actcctggcc
     2101 aagtctttat tctgtcccgc ccggccgcgc gcagacgggg aggccgacga cgaaagtcgt
     2161 gccttcgccc acgcggctgc gcacgcgtat gaagccgccg tggcgctcga cgattgagta
     2221 ggtgacggaa agcccgaggc ccgtgccttc gcccacgggc ttcgtggtga agaacgggtc
     2281 gaagattttc cgaaggtgct cggccgcgat gccgcagccc gtgtccgtga cggcgacgtg
     2341 aaccgtgccc ttctccatgt aggtctgtat gactacctcg ccgccgcccc gcgcctcgac
     2401 ggcctgcgcg gcgttcgcca gcaggttcat ccagacctgg ttgagctggc cagcgtagca
     2461 gtccacgagc ggcagctcgc cgtactcgcg ccggagcctt atcgcgccgc cgctgtagta
     2521 gcgcgagagc agccgcaccg acgagtcaat gccttcgtgt atgtccacct tcttgaactc
     2581 ggcctcgtcg aggcgcgaga aggttcgcag gttctggacg acggagcgga tacggtcggc
     2641 gccgtcgcgg cagtcgttga ttatcgagcg caggtctgag agcgttgcct cgtagtctat
     2701 ctcgcgtttc agctcggcga cgctcgcgcc gagcggctcg ggcaggtctg aggcgtcgta
     2761 gagcgcgagc agccgctcga cggcctccac gccctcggcg aggaagtcca tgttgccgta
     2821 gatgaagccg gccgggttgt taagctcgtg cgcgacgccc gccgccaact ggcccaggct
     2881 cgccatcttc tcgctgtgga ctatctgggc ctgtaggcgc tcgagctcgg ccttgcggcg
     2941 cgcgagctcc gagttgcggc gctcgaggtc ttgcttgtag cggcgcgcgt cgcgcaggag
     3001 cgcacgccgc tcaagcgcgc gctcgaccga cagctccagg acgtgcaggt caacgggttt
     3061 gagaaggtag tcggacgcgc ctatacgcac cgcgtcgagg acgcgctgcg tgcggtctat
     3121 gcctgagacc attatgacgg ccgtgtcggg gtgctgcgtg atgacgcgcc ggagcagctc
     3181 gacgccgccc agccccggca tcagaacgtc cgtgagcacg agcgcgaact cgcgccgcgc
     3241 cagcagcgcg agcgcctgct cggcgttcgc cgcggtcgag cagtagtagc gcgcgccgag
     3301 gcagtcggag aagagcgtgc gcacggcctc gtcgtcgtca acgatcagga ggctgcggtc
     3361 cggcttctcg acctgcgggg ccgcgaggcc cgccgcgccg gcttgtagtg tggcgtgagg
     3421 cgcgtgtgac atagaaaatt tgtgccgctt cggtgattga gagtcgcggt cgggcggcgg
     3481 tgaggccgtc acttcgacgg gcgccggggt ggggaaagta aaacccccgg cggcgaaggc
     3541 gcctgcgggg cgctctgcgc cgggattact aaagcacccg gcgtgccaac ggggcgcgtc
     3601 gggccgtccg ccggttttgc cagaaatttt gcagagggga agggggccgc ggccctccgg
     3661 cctcccggcc gggcgcgccg cgactgccaa aacttgtcag gagggccgct gatttttgtc
     3721 agccgtcagg gcgcgtagta ggcgttcacg tccgcgatga agtgcgtcgt ggagaacggg
     3781 aatatctgga acgcgccgtc gccgcccagg ctcacggtga agtggttgga gagcacttgg
     3841 ccggggccgt agttcaggtt cgacacgagc ggccgcgccg cgccgctcgg gtagagcgtg
     3901 acgtagccga agcccgcgcc cgccgccgtg ttgatcacgg tcgagttgcc aaccacggcc
     3961 agcgcgcccg cagggactat tatcgggccg cacgtcccgc gcgcggcctg ggtgcgcgta
     4021 gcgccggcgc cgagcggcgc gccggggttg taacaggcgg gctcgccggg cctcgtgtcg
     4081 agcagccgga acgggctcgg cagagggttg tatagaaggc cggccacgcc gttggcatcc
     4141 gcggcggcgc tgttgctgaa gtagccggag acgtcaacta tcaggtctgt ggtcgagagc
     4201 gcgaagattt tgaaggcgcc gtcaccgcct aggcccgccg cgaaggcgtt cgatagcacc
     4261 tgcccagccg tgtagttgat gttagagacg ccgggccgcg ccgagccgct cgggtagagc
     4321 gtgatgaagc ccggccccga gccctgtagg ttgttcacga cagtcgcgtt gcccacgacg
     4381 gccagagcgt catcggggat gacgagcccg tcgcacgtgc gacgcgccgc ctcggtgcgc
     4441 gtcatgccgg cggcgatggg cgcgcccggc gcgtcgcagg ccgcctgccc cgcgcgcgtg
     4501 tcgagcaggc gcacgggccg cgggagcggg tggaagtaga gcccgcccgc gcccggcggg
     4561 gcgtagtacc cggtcacgtc aacgatgaag tcggtggtgg acagcgcgaa gacgttgaag
     4621 gcgccgccgg cgcccaggcc cacggtgaag gcgttcgaga gcacttgccc ggcggtgtag
     4681 ttaatgttcg agacgttcgg ccgcgacgcg ccggaagagt agagtgtgac gaagccgggc
     4741 ccggcgcctt gcaggttgtt gacgaccgtg gcgttaccgg ctatcgcctg cgccgaggcg
     4801 gggatggtga cgccgccgca ggtcagccgg gcctgctgcg cgcgcgtcga gccggcggcg
     4861 agcggcgtgc cggggttctg gcaagccgcc tgccccgcgc gcgtgtcgag caggcggacg
     4921 ggcgagggca acgggtagta ctgcaagccg gcgccgccgc ccatctcgcc cgcggcgagc
     4981 gtgagcgaat aggcgcccgt cgcgcccgcg gcggcggagg tggcgcgaat ggtgtaggtg
     5041 ccggccgagg gcagcgtgaa gaggccgccg ccgtccggta tacgcgcgtt cgtgccgccg
     5101 cccccgccgt cgccctcggc gaccgccgag ccgcccggcc cgagcaggta gaggtaggcg
     5161 tcgaaggccg acgagttaag ggagacggag acctgctggc cggcggagcc ggcgaaggtg
     5221 tagtcgtcgt agtagcggcc gccgccgagg gcgcagtcgg tcgtcgcgag cgcgccgtcc
     5281 aaagtctgcc cgacgcctat gggcgagggt gcggggcagg tgaggcccgg cccgtccttc
     5341 tcccggccca cccagctgta gttaggcacg gcgaaagagc ctgtccgccc gccttgcaag
     5401 gtgtgggcgg tcacgaccca cgtgtcggtg tagtccttgt gcgagcggac gctgaagtag
     5461 tcgccccacg cgttgttgga aggccccgcg gtgccgccgg cgaggaagtg aaggccaccc
     5521 acggtcgcgc cgcccgtctg cacgtcgtcg ctcacccaga cctgcgtgcc ggggtagggg
     5581 aagccgtcgt cggccgagcc gccgccgact tgcagcgtgc cggcgaggtg gcccgacgcg
     5641 ttcggcgagg ccgtcgggta gaggaacgcg tacctcgggt tccagatttg cccctggctg
     5701 atgagcgctc cgttggcctc gctcaggcgc acgtggacga cataggggaa ggggaagtcg
     5761 gtgtcctgcc gcgcgttgaa catgacgcct attacgccgc cggcgacgta ggccgccacg
     5821 ggccgcgagt cggcccgcgc ggcccagttc gagccgtcgg ggctgaccgc ctcgccgtcg
     5881 cggctcatgc gcgtgaagta gctgagctgc acgtagtcgt agtagatgag gttctccgag
     5941 tcgggccact tgtgcaccct tatctggtgc gagttggcga aggcgataca atacatcgtc
     6001 gtcgccgccc cctcggtgca gcggaacgtc cccgtgttgt ccgacgtgaa gtagttgtag
     6061 ctgaagccgg tgccggcggc gagctccgcg agcgggacgc gcatgacggc ggcgccggag
     6121 aagaagccac cctgcgtgaa gacgttcgaa gtgatgtaga cgaagctcga cccgacggtc
     6181 atgctggggt agtcgaacca gtcgcctacg ccgaagccta cggcctgcgg cgtaaagtcc
     6241 caatataccc aggagttggt ggcgagcccc gcgccgccga cggcgcgcgc gagccggaac
     6301 gtccccgtgc tcgtgtcctc cctgtactgg agcccccaca gaatcatgtc ctgcgcgggc
     6361 gcgtatgccg ttacctggtc gcagcagaag cccccgttga cgggcgggaa gaaggagtaa
     6421 gggttgatgt aggtgaaggt gctgcctccg tcggcggact tggccgcgta ccagttggcc
     6481 gtatagaaga cagcgtcccc cgcgttgacg gccgtcggct cgaggacggt cgcgcgctgg
     6541 ctcgtaggca cctcttccgg ggtgaagtta tgcgacttga agaagacgag gtcgtcgggc
     6601 gcctgctgct gcagcccgac ttcggccatc gccttggaga cgcccccgtc ggcctccgtg
     6661 ggcggcgata tggtcgcagg gggcgcgggc ggcccctcgg ggagcgaagc ctcggggctc
     6721 tcctcctcgt gctcctgccg ctcgaccatc tgcgccgccg tgatggccgg cttcgcggag
     6781 accgcgccgt ggttgacatc ggccttagcc acggcgtagg ccgtgcccgc cattgcctgc
     6841 ccgcggccga cgagcgactt cgggtcgccc atctcctgcg ccgcgggcgc gggcgactgc
     6901 cgttcgggcg ccccggcgcg cgcagcgccc cgcgccccga aactcgcgag cgaaggcgtc
     6961 gaggcgagca gggccgccat aaagcaactg acggcggcga gcgtaagctt ttttctcacg
     7021 ggcggaatcc ttccggccgg gcttgagggc gccagggccg cggcgcgtcg cgcggggaag
     7081 ccacgacctt ctgcggcagc ggacggtgag gcctgtcagg gagacaggca gacgatattc
     7141 cgaacgccgc gcgatgtcaa taaactctga ggtgggcgca ctaacgggcg caggctcaga
     7201 gcccgagcgg gcggggagac ttgccgccga agaaccacgc ggcgccgact ctcaggcggt
     7261 ggtgccaggt cgggagccgg gtcgtataga gggcgaagcg tgcctgccgg gcgagccggc
     7321 cttcgatgac gcggccggcc gtgagcacgg cggcgtcgtc cgtgccgagg ctgacggcct
     7381 cgcccaactc ctcgaagcgg cgcgcggaag ggacgctgcc gtcaatgaga gcctgcacgt
     7441 tggcggcggc gagcgcagac tgctggaagg cgagctgcgc cgtgccggcg aggctcggca
     7501 cgatgtcggg gaagaaggct acgtcgccga gggcgaagac gccggggcgc ccgcggagct
     7561 gcaaggtcgg ctcgacgacg agctgcccgc gctgcgtctt ctcggcgtcg aggcgctcga
     7621 ccagagggtt gacgcgcacg cccgcagtcc agaccgtgcc ggccgactcg accgtggcct
     7681 gctcgccagc gtgctcgagg actacgccac gcgggagcac cttcacgacg cgcgtctcgg
     7741 tgtggacgtc cacgcgcttc tcccgcatca cctcctcgac gacctcgcgc aaatctgcgc
     7801 ccatcgtcgg caccaaacct ttgcccatct cgacgacgag cacgcgcggc tcgccgtgaa
     7861 ggccccgccg ccggaaggcg tcgcgcagca ggtctgccat cttcgtcgag agctctacgc
     7921 cgctggcgcc gccgcccacg acgacgaagg tcgcggccct ctgcgcgtcc tgcggcgcgg
     7981 cgtcgggctg tatgcggtcg agcgcctcta tcatgcggcg gcgcaggtcg tcggcgtggc
     8041 ggattttgcg gaaggggagc gcgtgctgct cggcgccctc gacgccccag aagttcgtta
     8101 cgccgccgac cgcgagcacg aggtagtcgt aggcgagctt gcgcacgcgg cccgcgaccg
     8161 atacctcgcg cgagccgaaa tcaacgccgg tgacggcgcc ctgcacgaac tgcacgcggt
     8221 cgtccagcag ttcgccgtag cgcggcgcga tgtgccacgc ctcgacctcg ccgctcaggt
     8281 actcgtagag gagcggcgtg tgcaggaagt gatcctcgtt cgagacgagc gtcacctgcc
     8341 ccgcgcccgc gaggcccagc gccgtgaaga gcccgccgaa cccgcccccc acgatgacta
     8401 tgcgcgcgct ctccgcgtcg cgctcctcgc ttgcgtccat caggcgtcgt ctcccatccg
     8461 cgtgttgccg aaccgcgcgg catggtagca gagaagccgc cgcgcgcgca cgccgcggcc
     8521 gcgaagggcc gcgcgggctg tgc
//
LOCUS       DASPKR010000773         2744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1290421, whole genome shotgun sequence.
ACCESSION   DASPKR010000773 DASPKR010000000
VERSION     DASPKR010000773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2744)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1290421"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            642..2276
                     /locus_tag="VD968_20195"
     CDS             642..2276
                     /locus_tag="VD968_20195"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HYE16772.1"
                     /translation="MAGGLVIHISNGSRRQTEVLSTERVRIGPGEDCHIRLGSDLLTD
                     SSIFVELARQNGNFRVAEFDPEMGITLNGRPVSRGAKIEDGDELRFSAFDIAMQFFPV
                     GELPAVVAHRRASVAPFIEQAAIEASATTRRDDAKVFLREFTRELLREINWSTKIVTL
                     LIAVSLVGGILYIGNAVYHELRKGRDLINRQNEELARLQGELKKVNEQFGEVDQKNQE
                     ILESFSLAPRIRTQYGNGVCLIAGSYMLFEAGTGRPLRYPEAQTNEDGTVLQSGQDQA
                     VLTPEGTGPPFIRDFVGTGFHVGGGYIVTNRHLVIEPWTADESVQALSASVRGQFRVT
                     RIVAFFPGVRLPFVMKVRQSSTRDDLAVAQVEAKDFPPTIPALPLDRKSEAAGVGKAV
                     VMMGYPSGEERLLATLPEAEARSIMQRYGASVETLLTHLSERNYIKPLTTQGHISDLE
                     SRGIIYDAKNAVGGSGSPLFGQSGRVIGINFATFTGLPDQNYAVPVSALYPLLARAGW
                     KSDEPSDEAASANSNSATPKEQKDSPSRTPASNQSR"
     gene            2443..>2744
                     /locus_tag="VD968_20200"
     CDS             2443..>2744
                     /locus_tag="VD968_20200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16773.1"
                     /translation="MSARAATITTAGITPELFPEQLARPASRALVAAALAVFLLAGFG
                     LRAYRLGTESLSEDELNKVRAVAEYRERGLTPANGEHPFLMKALLTASISASEAWNS"
BASE COUNT          483 a          946 c          885 g          430 t
ORIGIN      
        1 atagcgaccg tcgggctcga cttgtcctgc accgaataga acttcaggcc gttcgggagc
       61 gtgcgctcct tgtactcgat gggaggcacg cgcgtctgcg cgaaggccgg cggcgcggcg
      121 gcgagcgcgg ccagcagcag cattagcacc gcggaagcgt aacgaagcat ctttgacaac
      181 tcctcttgtt tcggccgggg cgggcgcgaa cgagcgccct cgcgtgactc cgaagactca
      241 ggctcgcgcc gttcgatgcc gcccgcgcgg aagattgttg tacgcttgaa gccgggcggc
      301 gaaagcctga gaaggaagac gaagcgctgc ggccgcccgc ggctcagaca cttttctacg
      361 ccccgcccgg cccgttagtt tccgcgtaag cccgtcagcc gcgaaatatt cctcgccagc
      421 acgcccgccc gtatgacggc ctggaaaagg gtacggcggg ctggatattt cggccccggc
      481 ggcgcccgct gccattctgg cggcgccgcg aatcttagta taaaatggcg cacagtggcg
      541 aacgcgcggg cggccgcgcc ggcaggcgcc ggcagttggg ccgccgtggg cgcgtcgcca
      601 cgttcggcgt agggctgttt tacagccggg tctcacaggg catggcaggc ggtttagtaa
      661 tacacatctc taacggcagc cggaggcaga ccgaggtgct ctcgaccgag cgcgtgcgca
      721 taggccccgg cgaggactgc cacatacgcc tcggctccga cctcctcacg gactccagca
      781 tcttcgtcga gctcgcacgc cagaacggca acttccgcgt cgcggagttc gaccccgaga
      841 tgggcatcac cctgaacggc cgccccgtct cgcgcggcgc gaagatcgag gacggcgacg
      901 agcttcgctt ctcggccttc gacatcgcga tgcagttctt ccccgtcggc gagcttccgg
      961 ccgtcgtcgc gcaccgccgc gccagcgtcg cccccttcat cgagcaggca gcgatagaag
     1021 cctccgccac cacgcgccgc gacgacgcca aagtcttcct gcgcgaattc acgcgcgagc
     1081 ttctgcgcga gataaactgg agcacgaaga ttgtcacgct gctgatagcc gtctcgctcg
     1141 tcggcggcat tctctatatc ggcaacgccg tctatcacga gctgcgaaag gggcgcgacc
     1201 tcatcaaccg gcagaacgag gagcttgctc gcctgcaagg ggagctgaag aaggtcaacg
     1261 aacagttcgg cgaggttgac cagaagaacc aggagatttt ggagagcttc tcgctcgcgc
     1321 cgcgcatacg cacgcagtac ggcaacggcg tctgcctcat cgccggctcc tacatgctct
     1381 tcgaggcggg gacggggcgg ccgctgcgct accccgaggc gcagacgaac gaggacggca
     1441 ccgttttgca gtcggggcag gatcaggctg tgctcacgcc cgaaggcacg gggccgccct
     1501 tcatacgcga cttcgtcggc acgggcttcc acgtcggcgg cggctacata gtgacgaacc
     1561 gccacctcgt catagagccg tggacggccg acgagagcgt gcaggcgctg agcgcgagcg
     1621 tgcgcggtca gttccgcgta acgcgtatcg tcgccttctt ccccggcgtg cgcctcccct
     1681 tcgtcatgaa agtccgccag agctcgacgc gcgacgacct ggccgtggca caggtcgagg
     1741 ccaaagactt cccgccgacc atcccggcgc tgccgctcga ccgcaagtcc gaggcagccg
     1801 gggtcggcaa ggcagtcgtg atgatgggct acccgagcgg cgaggagcgc ctgctcgcga
     1861 cgctcccgga ggcagaggcc cgcagcatca tgcagcgcta cggcgcctcg gtggagacgc
     1921 tcctgacgca cctctccgag cgcaactaca tcaagccgct caccacgcag ggccacatct
     1981 ccgacctcga gagccgcggc ataatctacg acgcgaagaa cgccgtaggc ggctccggct
     2041 cgccgctctt cggccagtcg ggccgcgtca tcggcatcaa cttcgcgacg ttcacgggcc
     2101 ttcccgacca gaactacgca gtccccgtta gcgccctcta ccctctgctt gcgcgcgccg
     2161 gctggaagtc ggacgagccg tcggacgagg cggcgagcgc caactcgaac tcggccacgc
     2221 cgaaggagca gaaggactcg ccgtcgcgca cccccgcgtc gaaccaatcc cgctaagtga
     2281 gcacgcgcga gcgcgccgtg tgtgtgactt cgtaaagtcg cacaggcgcc gttttgacag
     2341 cgcgggggtt gtcggataat ctccaacgtt taagaaggcg ggcgccgggc cgaaggtttt
     2401 gcgcgcccgc ctattttcgg cacggagtct catctaagag ttttgtctgc aagggccgcg
     2461 acaatcacga ccgccgggat aacccccgaa ctttttcccg aacaactcgc ccgcccggcg
     2521 agccgcgcgc tcgtcgcggc ggcgctcgcc gtcttcctcc tcgcgggctt cggcctgcgc
     2581 gcctaccggc tcggcaccga gagcctgagc gaggacgagt tgaacaaggt tcgcgccgtc
     2641 gcagagtacc gcgagcgggg gttgacgccc gccaacggcg agcacccgtt cctgatgaag
     2701 gcgctgctga ccgcgagcat ctcggcctcc gaagcatgga actc
//
LOCUS       DASPKR010000774         3066 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1290950, whole genome shotgun sequence.
ACCESSION   DASPKR010000774 DASPKR010000000
VERSION     DASPKR010000774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3066)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3066
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1290950"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..686)
                     /locus_tag="VD968_20205"
     CDS             complement(<1..686)
                     /locus_tag="VD968_20205"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HYE16774.1"
                     /translation="MKRMPVWPHLTIIALLFAVVGGVAAALWVRNEPTAEALAVPRAA
                     RLERVDGQVGLDRGLEEEADDREWLLAEQNTPITEGDRLYAGEGSSASVAFTGRNYAR
                     LDPGTSLEVLSLSDRRTQLALRDGSAVFDLGSLDSGELYEVATPYGAVELREPGLYQL
                     GMNDDGSAFVSVLSGLAQVIGLAGSGEVSKGEMLTLLGQTAAEVVLSRLDPSYAGGLL
                     DDYYGYRYPDT"
     gene            986..>3066
                     /locus_tag="VD968_20210"
     CDS             986..>3066
                     /locus_tag="VD968_20210"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HYE16775.1"
                     /translation="MNRIVRAAVLGAGTMGAQIAAHLANAGVRALLLDIVPKEPTQEE
                     SARGLTIESREVRDRIARAGLEAAKKAKPAAFFSQEKAALVEVGNFEDDMARLKECDL
                     IIEAVVENLEIKRRLYERVEQHRRPGSVVASNTSGIPIRQLAEGRSEDFRAHFLGIHF
                     FNPPRYLHLVELIRTEWTKPEVSCSLYGFLDRRLGKGVVPAKDRPNFIANRIGTYGGL
                     VTIKTMLEDGYSIEEVDKMTGQAVGRPKTATFRLFDLVGLDVFLHVAENLYGAVPEDE
                     EREVFVAPEFLKQMAGRGLLGNKTKGGFYRKQKGEGEKQEIWTLDHASLEYRPAQKVK
                     LPSLDAAKNIEDTRQRLGALVWGKDRVGQFLWKTVSKTLVYAANRIPEIADTVLEVDR
                     AMKWGFGWELGVFEVWDAIGVEKSVACLEDEGRAVPRNVRRMLEAGVKSFYKSEGGQE
                     FYLDFAKGDYAPVTQPPGVIVLKSVKDRTGVIKRNAGASLIDLGDGVACLEFHSKMNS
                     IGGDTLQMLKTALAEVERNFVGLVVGNQGQNFSVGANLMLVLLGAQEEDWDELDLAIR
                     AFQQATMSLRYSPKPVVVAPFQMTFGGGCEMTLHADRARAAAETYIGLVEVGVGLIPA
                     GGGTKEMLVRALDAIPPGVTDADPFPFVKRAFETIALAKVATSAEEAKQYGFLRDEDS
                     YSMNADRLIADA"
BASE COUNT          543 a         1022 c         1015 g          486 t
ORIGIN      
        1 gtgtcggggt agcggtagcc gtaatagtcg tcgagcaggc cgcccgcgta tgaagggtct
       61 agccgcgaga ggacgacctc cgcggccgtc tggccgagca gcgtgagcat ctcgcccttg
      121 cttacctcgc cggagccggc gagccctatg acctgcgcga gcccgctcag tactgagacg
      181 aaggcgctgc cgtcgtcgtt catgccgagc tggtagaggc ccggctcgcg cagctcgacg
      241 gcgccgtagg gcgtcgcaac ttcgtatagc tcgccggagt ctagcgaccc caggtcgaag
      301 acggccgagc cgtcacgcag cgcgagctgc gtgcgccggt cggagagcga aagcacttcg
      361 agagacgtgc cggggtctag ccgcgcgtag ttgcgccccg tgaaggccac ggacgcgctc
      421 gaaccctcgc ccgcgtagag gcggtcgccc tccgtgatcg gcgtgttctg ctccgccaaa
      481 agccactccc tatcgtcggc ctcttcttcg aggccgcggt cgagccccac ttggccgtcc
      541 acgcgctcga gcctcgccgc ccgcgggacg gccagcgcct ccgccgtcgg ctcgttcctc
      601 acccaaagcg cggctgccac cccgccgacc acggcgaaca gcagcgcgat aatcgttaaa
      661 tgcggccaca ccggcatcct cttcatgaaa tacctccccc cgacgcgttt aaatcggatt
      721 tgtttctccc tccccgtcgc aaccgccatg ccagccggcc cgattccggg gcgcgactct
      781 tagtcgttaa tttggagcgt ttagcggcga ggcccgcgcc gccgcccggc agcgcttgcg
      841 tgcgtaaatc aggcacagcg ccccataacg tttaccgccc ggcccatccg gtgagcggct
      901 cacccttgct gaatgaatgc tcattcagtt atgatgcgcg cgtccccgta ggtcggtgaa
      961 tcacccggaa aggctgtctt cccctatgaa tcggattgtg agggccgcgg tgctgggcgc
     1021 gggcacgatg ggcgcgcaga tagcggcgca cctggcgaac gcgggcgtga gggcgctcct
     1081 cctcgacatc gtcccgaagg agccgacgca ggaggagagt gcgcgcggcc tcacgattga
     1141 gagccgcgag gtgcgcgacc ggattgcgcg cgcggggctc gaggccgcta agaaggcgaa
     1201 gccggccgcg ttcttctcgc aggagaaggc cgcgctcgtc gaggtcggca acttcgagga
     1261 cgacatggcg cggctcaagg agtgcgacct catcatcgag gccgtagtcg agaacctcga
     1321 gataaagcgc cgcctctacg agcgcgtcga gcagcaccgc cggcccggct cggtcgtcgc
     1381 ctcgaacacg agcggcatac ccatccggca actcgccgaa gggcgctccg aagacttccg
     1441 cgcgcacttc ctcggcatac acttcttcaa cccgccgcga tacctgcacc tggtcgagct
     1501 catccgaacc gagtggacta agccggaagt ctcctgctcg ctctacggct tcctcgaccg
     1561 ccgcctgggc aagggcgtcg tcccggccaa agaccgcccg aacttcatcg cgaaccgcat
     1621 aggcacctac ggcggcctcg tcaccataaa gacgatgctc gaggacggct actcgataga
     1681 agaggttgac aagatgacgg ggcaggcggt gggccgccca aagaccgcga ccttccgcct
     1741 cttcgacttg gtcggcctcg acgttttcct ccacgtcgcc gagaacctct acggcgcggt
     1801 gccggaggac gaggagcgag aggtcttcgt cgcgccggaa ttcctgaagc agatggccgg
     1861 gcggggcctg ctggggaaca agacgaaggg cggcttctac cggaagcaga agggcgaggg
     1921 cgagaagcag gagatttgga ctctcgacca cgcctcgctc gagtaccgcc cggcgcagaa
     1981 ggtgaagctc ccctcgctcg acgcggcgaa gaacatcgaa gacacgcgcc agcgcctcgg
     2041 ggcgctcgta tggggcaaag accgcgtcgg ccaatttctg tggaagaccg tctcgaagac
     2101 gctcgtctat gcggcgaacc gcatacccga gatagccgac acggtgctgg aagttgaccg
     2161 cgcgatgaag tggggcttcg ggtgggagct gggcgtcttc gaggtttggg acgcgatagg
     2221 cgtggagaag tcggtcgcgt gcctcgaaga tgaagggcgc gcggttcccc ggaacgtccg
     2281 ccgcatgttg gaggcgggcg tcaagagctt ctacaagtcc gagggcgggc aggagtttta
     2341 cttggacttc gcgaagggag actacgcgcc cgtcacgcag ccgccgggcg tcatcgtcct
     2401 gaagtcggtc aaagaccgca cgggcgtcat caagcgaaac gcgggggcgt cgctcataga
     2461 cctgggcgac ggcgtcgcat gccttgagtt ccactcgaag atgaactcca tcggcggcga
     2521 cacgctccag atgttgaaga cggcgctcgc ggaagtcgag cggaacttcg tcggcctcgt
     2581 cgtcggcaac caggggcaga acttctccgt cggcgcgaac ctgatgctgg tgctgctcgg
     2641 cgcccaggaa gaagattggg acgagctcga cctggcgatc cgcgccttcc agcaggcgac
     2701 gatgagtttg cgctactcgc cgaagcccgt cgtcgtcgcg cccttccaga tgaccttcgg
     2761 cggcggctgc gagatgacgc tccacgctga ccgcgcgcgc gcggcggccg agacttacat
     2821 cgggctcgtc gaggtcggcg tcgggctgat acccgcgggc ggcgggacga aggagatgct
     2881 cgtccgcgcg ctcgacgcca tcccgccggg cgtcaccgac gcagaccctt tccccttcgt
     2941 caagcgcgcc ttcgagacca tcgcgctcgc gaaggtcgcg acctcggccg aggaggcgaa
     3001 gcagtacggc ttcctccgcg atgaggactc ctactcgatg aacgccgacc gcctcatcgc
     3061 cgacgc
//
LOCUS       DASPKR010000775         2679 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1291539, whole genome shotgun sequence.
ACCESSION   DASPKR010000775 DASPKR010000000
VERSION     DASPKR010000775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1291539"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..869)
                     /gene="trmFO"
                     /locus_tag="VD968_20215"
     CDS             complement(<1..869)
                     /gene="trmFO"
                     /locus_tag="VD968_20215"
                     /inference="COORDINATES: protein motif:HMM:NF003739.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HYE16776.1"
                     /translation="MSEVVVIGGGLAGAEAAWQAAEAGARVRLYEMRPVRQTPAHRTD
                     RLAEIVCSNSLKSDEPGTAPYLLKEELRRAGSVVIGAAMETRVPAGAALAVDRERFAA
                     LVTERLSAHPRIQILREEATRVSDENVTVIAAGPLCSDALAEEISRLTGGTGLYFYDA
                     ISPIVSAESVNTEIAFRAARYGKGGDDYLNCPMSEEDYARFYDALVEAKSVPLARFEE
                     TRWFEACLPIEELARRGRDTLRYGPMKPVGLTDPRTGREPYAAVQLRQENLMADAYNL
                     VGFQNHLRYGEQA"
     gene            complement(930..2567)
                     /locus_tag="VD968_20220"
     CDS             complement(930..2567)
                     /locus_tag="VD968_20220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16777.1"
                     /translation="MRRTLSRISLTAAVAASLCLLLAPAPAVARRSNESKKLPSPEKI
                     VGEYVKALGGKKRLAALRDATYEWDVSTGDGATGKARTRLRNPSSLRTDLSLTAGESV
                     GAANARAAWAVGGGGHLQTLTGEEALAARLQSLLEAGGFADYKKQKVLARTVALEEVG
                     GEPAYLVEFSTRAGARLRYWFGATSRVPLQMADDARRLRVRFGDWRQRAGSPVLAEPH
                     RLEIERGSPPALTLTLREARYNTGLAESLFEPPPDASLDIPALLRDLARNQNEVDRRV
                     NDYTFTHKVTERELTDKGEVKKEKVSVYEVYPIVGWGAVEKLVSVNGVPLKGEAALKE
                     SKRVAEEIEKAERKLPEVERKRERRRAERAAEAKKKRGSAAGEGEGEDDLSISTFLRA
                     AEFVSPRRERFRDRDTIVFDFRPRPGFKPSSREEEIVSKLSGVVWIDPAERQVVRLEA
                     RLVEGFKMGGGLVASIKPGSAFVFEQMRLPDGVWLPRYSQVNASARVFLFAGISINET
                     HEFGDYKRFSADAGEDKLDSPRKPDADEQTEEKPPSP"
BASE COUNT          386 a          910 c          932 g          451 t
ORIGIN      
        1 ctagcctgtt cgccgtaacg tagatgattc tggaagccga cgaggttgta ggcgtcggcc
       61 atcaaattct cttgtcttaa ctgtacggcg gcgtaaggct cgcggcccgt gcgcgggtct
      121 gtgaggccga ccggcttcat ggggccgtag cgcagggtgt cgcggccgcg gcgggccagt
      181 tcctcgattg gcaggcacgc ctcgaaccag cgcgtctcct cgaagcgggc gagcgggacg
      241 ctctttgctt cgacgagcgc gtcgtagaag cgggcgtagt cctcctcgct catggggcag
      301 ttgaggtagt cgtcgccgcc cttgccgtag cgcgcggcgc ggaaggctat ctcggtgttg
      361 acggactcgg ccgagacgat gggcgagatg gcgtcgtaga agtagagccc cgtgccgccc
      421 gtgagccgag aaatctcctc ggccagtgcg tccgagcaga gcgggccggc cgcgatgacg
      481 gtcacatttt cgtcggagac gcgcgtcgcc tcctcgcgca ggatttgtat gcgcgggtgc
      541 gcgctcaggc gctcggtgac gagcgcggcg aaccgctcgc ggtcaacggc cagcgcggcg
      601 cccgccggca cccgcgtctc catcgccgcg ccgatgacga cggagcccgc gcgccgcaac
      661 tcctccttca aaagataagg tgccgtcccc ggttcgtccg acttcaaaga gttcgagcag
      721 actatctcgg cgagcctgtc ggtgcggtgc gcgggcgtct gccggacggg ccgcatctca
      781 tagaggcgca cacgcgcgcc ggcctcggcc gcctgccaag ccgcctctgc ccccgccagc
      841 cccccgccga tgactaccac ttcactcatg ccgtaaatcg taaagcctcg acggcgaatc
      901 gtaaaccggc gggcgcgcgg cggggggcgc tagggcgagg ggggcttctc ttcggtctgc
      961 tcgtcggcgt cgggcttcct gggcgagtcg agcttgtcct cgccggcgtc ggcgctgaag
     1021 cgcttgtagt cgccgaactc gtgcgtctcg ttaatcgaga tgccggcgaa gaggaagacg
     1081 cgcgccgagg cgttgacctg cgagtagcgc ggcagccaca cgccgtcggg caggcgcatc
     1141 tgctcgaaga cgaaggccga gccgggctta atcgaggcga cgagcccgcc tcccatcttg
     1201 aacccctcga cgagacgggc ttcgagccga accacctgcc gctcggccgg gtcaatccag
     1261 acgacgcccg agagcttcga gacgatctcc tcctcgcgcg aggagggctt gaaacccggg
     1321 cgcgggcgga agtcgaagac tatcgtgtcg cggtcgcgga agcgctcgcg gcgcggcgag
     1381 acgaactccg cggcgcgcag gaaggtagag atactgaggt cgtcttcgcc ctcgccttcg
     1441 cccgcggccg acccgcgctt tttcttcgcc tcggccgcgc gctcggcgcg gcggcgctcg
     1501 cgcttgcgct cgacctcggg cagcttgcgc tcggccttct cgatctcctc ggcgacgcgc
     1561 ttcgactcct tgagcgcggc ctcgcccttg agcggcacgc cgttaacgct cacgagcttc
     1621 tcgacggcgc cccaaccgac tatcggatag acctcataga ccgagacctt ctccttctta
     1681 acctcgccct tgtcggtcag ctcgcgctcc gtgaccttgt gcgtgaaggt gtagtcgttg
     1741 acgcggcggt caacttcgtt ctggttgcgc gcgaggtcgc gcagcagcgc cggtatgtcg
     1801 agcgaggcgt cgggcggcgg ctcgaagagc gactcggcga ggcccgtgtt gtagcgcgcc
     1861 tcgcgcagcg tgagcgtgag ggcgggcggc gagccgcgct cgatttccag cctgtgcggc
     1921 tcggcgagaa cggggctgcc cgcgcgctgt cgccagtcgc cgaagcgcac gcgcaggcgg
     1981 cgcgcgtcgt ccgccatctg tagggggacg cggctcgtcg cgccgaacca gtagcgcagg
     2041 cgcgccccgg cgcgcgtgga gaactcgacg aggtaagccg gctcgccgcc cacctcctcg
     2101 agcgcgacgg tgcgcgcgag cactttctgc ttcttgtagt cggcgaagcc gccagcttcg
     2161 agcagcgatt gcagccgcgc tgcaagcgcc tcttcgcccg tgagagtctg caaatgcccg
     2221 ccgccgccga cggcccacgc ggcgcgcgcg ttggccgcgc ccacgctctc gcccgccgtg
     2281 aggctcaggt cagtccgaag cgaggacggg tttctcaggc gcgtccgcgc cttccccgta
     2341 gcgccgtcgc cggttgaaac gtcccactcg taggtcgcgt ctcgcaatgc cgccaggcgc
     2401 ttcttcccgc ccagcgcttt cacgtactcg ccgacgattt tttcgggcga gggcagcttc
     2461 ttcgattcgt tcgagcggcg cgcgacagcc ggcgcgggcg cgagcaaaag gcagagggac
     2521 gcggcgaccg ccgcggtgag cgagattcgg gacagcgttc ttctcatctt cttttagacg
     2581 cgggagagcg ttatgagtgt tatcccggcg tgtgcgggcc gtcgggacgt gcgaaaccgg
     2641 gagggaggcg caaggcttta gagtgcctcg cgaccgccg
//
LOCUS       DASPKR010000776         4514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1293411, whole genome shotgun sequence.
ACCESSION   DASPKR010000776 DASPKR010000000
VERSION     DASPKR010000776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 4514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4514)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4514
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1293411"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VD968_20225"
     CDS             complement(<1..185)
                     /locus_tag="VD968_20225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylphosphate carboxylase subunit delta"
                     /protein_id="HYE16778.1"
                     /translation="MLEAGEVERRAARVKLLLMDCDGVLTDGRITLLDGGDEQKSFHT
                     RDGHGLVLLHRAGLRTA"
     gene            complement(191..2455)
                     /locus_tag="VD968_20230"
     CDS             complement(191..2455)
                     /locus_tag="VD968_20230"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE16779.1"
                     /translation="MLAATAIAPARQQQALPAWQVTGYDITVSAPGAAGGERAISARA
                     RIDARNVGAGAGRTMTLRINPDAKEVSATVGGASARVRQGSEARTKLQTAQVALPSAV
                     EPGGSVSVTVEYRLPVAENTGLAAVSPEGLQFLPLSFWYPTPNTPVAPRGADYAPFRL
                     TVQGAAGGETVVSSGKAAQGGAGFEQTLNAQPFFLTGRWEQAEGSGDARGVSAWLRAG
                     AGEDERKQAEALINLAAAARAFYAGLLGPAPDAPLRLVGVRRGAGFDMAGTVLLDHAV
                     FRRPKVDSVTALHIADAVARLWVGGAAGVQGEGAGAVREGLPRLLATLFIEKQFGKTA
                     ADEERMKMALLYASVARKDAPLSQISPAFDTYFNSASNKGALVWRILMDAIGRERFAA
                     VLRAEFSPGREVTLASLRNRLAEAGGERVVSLLPALFDKPTDTDFLVGLPQQRGGGWA
                     STLRNTGSFDVEVTVLALTERGQRLTTTARIPAKDFGEARFQTAERITRVEIDPEKLY
                     PQLDYSNDIMPQSPGTAETAEQARAQLAQQPARAEEAAREILRRTPSNEEARVVLARA
                     LLEQSKLDEAEREFRTALESPLPSPATLAWANVGFAEIAMRRQRAAEAARLFDLAAKI
                     EAEYASTFAARAGRIRAETAAGSAPAVDEQLKTAVTQLDAAIRSGRKADIDAAIVPGE
                     LLSFSKGLIGTQPEIWQTRVLRTEQVAPDRVAADVTLTVRTLGRDMQGPALFVFARTP
                     AGWKLSEIPVFEVR"
     gene            complement(2547..3404)
                     /gene="kdsA"
                     /locus_tag="VD968_20235"
     CDS             complement(2547..3404)
                     /gene="kdsA"
                     /locus_tag="VD968_20235"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: protein motif:HMM:NF003543.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HYE16780.1"
                     /translation="MSENEGQAIKPFRVGDATFGDGRLTVIAGPCVVESREHALFVAR
                     ECRKRARDVGLDYVFKASYDKANRSSHASYRGPGMREGLEALRAVKEETGAPVLTDVH
                     DVSQVEEAAAVADVLQIPAFLCRQTDLIEAACRTGRAVNVKKGQFLAPQDARNIVAKA
                     RAAGCERLLLTERGYTFGYNNLVVDMRAFPIMRRFGAPVVFDVTHSLQLPGGLGHATG
                     GQSEFIEPLARAGVACGVDAVFMEVHEAPERALSDGPNALPLARMAALLSTLRELHDL
                     VGRAAVAAQ"
     gene            complement(3401..>4514)
                     /locus_tag="VD968_20240"
     CDS             complement(3401..>4514)
                     /locus_tag="VD968_20240"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYE16781.1"
                     /translation="IDIERMRRSRAASASTTEAAPTGTDENEAKRTAGNASPRAAEVE
                     RAAAPASSKRRWQGVAASLAERLTQPLWFVVALCLALLLVFGGLLLWRSRDERAGAVS
                     PAAGAEDESAETVGRELAAAGPGSPRGSQVREPTTAAQYYQNGTYFSSIRSFDAAVRD
                     FRRAIELQPDFPAAYNRLGLALLNKGQLAAAADAFRKAIEQRGGDYPFAQYNLGMALQ
                     WQNDSEGALAAYRDAIRSRGTYPDAHFQIGSILVRSRGREGEAIEPLRTAIEQNGGRD
                     PEAHMLLGVALAKQKDYSAAEAAFREAISQRGGDFAAARYNLGLLYETTGRPAEAVEE
                     YEKYLEGAPRAENRREVQETIRELKRRVERQGGVSK"
BASE COUNT          623 a         1590 c         1599 g          702 t
ORIGIN      
        1 atagccgtcc gcaggcccgc gcggtgcagc agcacgaggc cgtggccgtc gcgcgtgtgg
       61 aagctcttct gctcgtcgcc gccgtcgagg agcgtgatgc ggccgtccgt gaggacgccg
      121 tcacagtcca tcagcagaag cttcacgcgc gcggcgcgcc tctcgacttc ccccgcctca
      181 agcatgacct ttacctgacc tcgaagaccg gaatctcgga gagcttccag cccgcgggcg
      241 tgcgcgcgaa gacgaagagg gccggcccct gcatgtcgcg gcccagagtg cggactgtca
      301 gcgtcacgtc ggcggcgacg cggtcgggcg cgacctgttc ggtgcgcagc acgcgcgtct
      361 gccagatttc gggctgcgtg ccgatcaagc ccttcgagaa gcttagaagc tcgccgggga
      421 cgattgcggc gtcaatgtct gccttcctgc ccgagcgtat ggccgcgtcg agttgcgtga
      481 cggccgtctt caactgctcg tcaactgcgg gcgcggagcc ggccgccgtt tcggcgcgga
      541 ttctgcccgc gcgcgcggcg aacgtggagg cgtactcggc ctcgattttc gctgcgaggt
      601 cgaaaaggcg cgcggcctcg gcggcgcgct gccggcgcat ggcaatctcg gcgaagccga
      661 cgttggccca cgcgagcgtt gcgggcgagg ggagcggcga ttcgagcgcc gtgcggaact
      721 cgcgctcggc ctcgtctagc ttgctctgtt cgagcagggc gcgggcgaga acgacgcgcg
      781 cctcctcgtt cgaaggcgtg cggcggagga tttcgcgcgc ggcctcctcg gcgcgggccg
      841 gctgctgcgc cagctgcgcg cgcgcctgct cggccgtctc ggccgtgcct ggcgactgcg
      901 gcataatgtc gttcgagtag tcgagctgcg ggtagagctt ttcggggtct atctcgacgc
      961 gcgtgattct ctcggcggtc tggaagcggg cctcgccgaa gtccttcgcc ggaatgcgcg
     1021 ccgtggtcgt gagcctctgg ccgcgctccg tcagcgcgag cacagtcacc tcaacgtcga
     1081 aagagcccgt gttgcgcagg gtcgaggccc agccgccgcc gcgctgctgc ggcaggccga
     1141 cgagaaaatc cgtgtccgta ggcttgtcga agagtgcggg caagagggag acgactcttt
     1201 cgccgcccgc ctctgcgagc cggttgcgca acgaggcgag cgtcacttca cgccccggag
     1261 aaaattcggc gcgcagcacg gccgcgaacc gctcgcgccc gatggcgtcc ataagtatcc
     1321 gccagacgag cgcgcccttg ttcgaggccg agttgaagta tgtgtcgaag gcgggagaga
     1381 tctgcgagag cggagcgtct ttgcgcgcga ccgaggcgta taggagcgcc atcttcatgc
     1441 gctcctcgtc ggcggccgtc ttgccgaact gcttctcgat gaagagcgtt gcgagcagcc
     1501 gcggcagccc ctcgcgcacg gcgcccgcgc cctccccctg cacgccggcc gccccgccga
     1561 cccagaggcg agcgacggcg tccgcgatgt gcagcgcggt caccgagtca accttcgggc
     1621 ggcggaagac ggcgtggtcg agcaggactg tcccggccat gtcgaagccg gctccgcggc
     1681 gcaccccgac gagccgcagc ggcgcgtcag gcgccgggcc gaggaggccc gcgtagaacg
     1741 cccgcgcggc ggcggcgagg ttaatcagtg cctctgcctg cttcctctca tcctcccccg
     1801 cgcccgctcg cagccaggcg gagacgccgc gcgcgtcgcc agagccctcg gcctgctccc
     1861 agcggcccgt caggaagaaa ggctgcgcgt taagagtctg ctcgaagccg gcgccgccct
     1921 gcgccgcctt gcccgacgag acgaccgtct cgccgccggc cgcgccctgc acggtcaggc
     1981 ggaagggcgc gtagtcggcg ccgcgcggcg cgacgggcgt gttcggcgtc ggataccaga
     2041 aagagagcgg gaggaactgc aagccttcgg gcgagacggc cgcgagcccc gtgttctcgg
     2101 cgaccggcag gcggtattcg acagtgacgc tgaccgagcc tccgggctcg acggcggagg
     2161 ggagagctac ctgcgcggtc tgcagcttgg tgcgggcctc gctcccctgc ctgacgcgcg
     2221 ccgaggcgcc gccgaccgtg gccgacacct ccttcgcgtc ggggtttatg cgcaaggtca
     2281 tcgtgcggcc ggcgcccgcg ccgacgttgc gagcgtctat gcgcgcgcgg gccgagatag
     2341 cgcgctcgcc gcccgcggct cccggcgcgc tcacggtgat gtcgtagccc gtgacctgcc
     2401 acgccggcag ggcctgctgc tgccgcgcag gcgcgattgc tgtggccgca agcacaagca
     2461 acgcgaccag gggggttcgt aaagtatgaa gaagcatgac gggatgggtg ccggggcgca
     2521 gtcgctccgg ccgttctttt aagttctcac tgcgccgcca ccgccgcgcg gccgactaga
     2581 tcgtgaagct ccctgagcgt cgagagcagc gcggccatgc gcgcgagcgg gagcgcgttc
     2641 gggccgtcgg agagggcgcg ctccggcgcc tcgtgcactt ccatgaagac tgcgtcaacg
     2701 ccgcaggcga cccccgcgcg ggcgagcggt tcgatgaact ccgactgccc gcccgttgca
     2761 tgcccgagcc cgccgggcag ttgcaggctg tgcgtcacgt cgaagacgac gggcgcgccg
     2821 aagcgccgca tgatggggaa ggcgcgcatg tcaacgacga ggttgttgta gccgaacgtg
     2881 tagccgcgct cggtcaaaag cagccgctcg cacccggccg cgcgcgcctt cgcgacgatg
     2941 ttgcgcgcgt cctgcggcgc gaggaactgc cccttcttga cgttgacggc gcgccccgtc
     3001 cggcacgcgg cctcgatcag gtcggtctgc cggcagagga acgcggggat ttgcagaacg
     3061 tccgcgacgg ccgccgcctc ttcgacctgc gaaacgtcgt gaacgtccgt gagcacgggc
     3121 gcgcccgtct cttctttcac agcgcggagg gcttcgagcc cctcgcgcat gccggggccg
     3181 cggtacgacg cgtgcgagga gcggttggcc ttgtcgtatg aagccttgaa gacgtagtcg
     3241 agccccacgt cgcgcgcgcg cttccggcac tcgcgcgcca caaacagcgc gtgctcgcgc
     3301 gactcgacca cgcaaggccc ggcgatgacg gtcagccggc cgtcgccgaa cgtcgcgtcg
     3361 cccacgcgga aaggctttat cgcctgccct tcattctcgc tcacttagac acgcctccct
     3421 gccgctctac gcggcgcttc aactcccgaa tcgtctcctg cacctcgcgg cggttctcgg
     3481 cgcgcggcgc cccttccaga tacttctcgt actcctcgac tgcctcggcc gggcggccgg
     3541 tcgtctcgta gagcaggccg aggttgtagc gcgccgcggc gaagtcgccg cctcgctggc
     3601 ttatcgcctc gcggaaggcg gcctcggccg ccgagtaatc cttctgcttt gcgagcgcga
     3661 cgcccaaaag catgtgggcc tccgggtcgc gcccgccgtt ctgctcgatg gccgttcgca
     3721 gcggctcgat tgcttcgccc tcccggccgc gcgagcgcac gaggatgctg cctatctgga
     3781 agtgcgcgtc cgggtacgtg ccgcggctcc gtatcgcgtc gcggtacgcg gcgagcgcgc
     3841 cttcggagtc gttctgccac tggagcgcca tgccgaggtt gtattgcgcg aaggggtagt
     3901 cgccgccgcg ctgctcgatt gccttgcgga aagcgtcggc cgccgccgcg agctgcccct
     3961 tgttcaggag cgcgagcccg aggcggttgt acgccgcggg gaagtccggc tgcaactcta
     4021 tggcgcggcg gaagtcgcgt acggccgcgt cgaagctgcg tatggaggag aagtacgtgc
     4081 cgttctggta gtactgcgcg gccgtcgtcg gctccctcac ctgcgagccg cgggggctac
     4141 ccggccccgc cgccgcaagc tcgcgcccga cagtctccgc agactcgtcc tccgcgccgg
     4201 ccgcgggcga gactgcgccg gccctttcat cgcgcgagcg ccagagcagc agccctccga
     4261 agacgaggag cagggcgagg cacagggcga cgacaaacca gagcggctgc gtcagccttt
     4321 cggcgagcga ggccgcgacg ccctgccacc gccgcttact cgacgcaggg gcagcggccc
     4381 tctcaacttc cgcggcgcgg ggcgaagcgt tgccggccgt gcgcttcgcc tcgttctcgt
     4441 ccgttcccgt gggggccgct tccgtcgtgc tcgcggaggc ggcgcggctg cggcgcatac
     4501 gctcgatgtc tata
//
LOCUS       DASPKR010000777         2701 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1808313, whole genome shotgun sequence.
ACCESSION   DASPKR010000777 DASPKR010000000
VERSION     DASPKR010000777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2701)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2701
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1808313"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VD968_20245"
     CDS             <1..192
                     /locus_tag="VD968_20245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16782.1"
                     /translation="GANEEDLLPAIVFSLSRAAVRETVVGGRAVVEGGRHPEQEEITS
                     RFAALQRRLWGRGAGDDES"
     gene            242..1372
                     /gene="argE"
                     /locus_tag="VD968_20250"
     CDS             242..1372
                     /gene="argE"
                     /locus_tag="VD968_20250"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008777 - acetylornithine deacetylase
                     activity [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HYE16783.1"
                     /translation="MDVVETLAGLVAVDSTSSRTNAEIIRLLAPRLSAWGMHVRFLPY
                     EDEAGVEKINLVATTHDADEVELALVGHTDTVPFDPEWGEALKLTGRGGRLYGRGACD
                     TKGFIAAALAAAGQAGLKNLRKPLALVFTADEEVGCLGAKRLAEARPFRARYAVVGEP
                     TSLRPVRAGKGYCLAEILVRGREGHSAYPESGASAVTRAARLITRIERVAEELKREAH
                     EAFDPPHTTVNVGLIRGGTAKNIIAGECRFTLEWRPVPGQRPERVAEMVSREAEALRA
                     EDADFDCEVRVTRLDAGMETPAASALVRELEAATGFSAGTISFGTEAPQMAELGAEAV
                     VFGPGDIRTAHRTGEFVPEEELRGAVSILRRAIERFCGPEHQ"
     gene            1389..2519
                     /locus_tag="VD968_20255"
     CDS             1389..2519
                     /locus_tag="VD968_20255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16784.1"
                     /translation="MNLRKTLFLTAMLLCSFALGCAGAARAQAQQQQAPLTNEEFLAV
                     VRQLSKRPSLKEQLIEDLRRRGIGFPLTPGLRSFVATRSGNDADLRRALEEAERRRLN
                     PGEAALLPPSAAEAESLLAKTRAATLEAAERMPDFVVKQLVTRSYARGRTQNWVTSDR
                     LTVGVSYRVEGGEHYRLLAVNGIASPASAQSDERSDYSAAGGTNSTGEFVTALRSIFS
                     EEARAQFRAVETASLRGRRTIVYEYEVKRPNSIKVLAYNNERSVVVGHRGRLWVDREL
                     GRVLRVESDATEIPADFPVVASRRELDYDWVKIEGQGEYLLPSRAVLVMTVSQDGEVY
                     QSRNDIRFRGYQKYGTELRIIEDDILDEEVPAEKPPEKPPKP"
BASE COUNT          439 a          914 c          954 g          394 t
ORIGIN      
        1 ggggcgaacg aggaagacct gcttcccgca atcgtcttct cgctctcgcg cgcggccgtg
       61 cgcgaaacgg tcgtcggcgg ccgcgccgtc gtcgaaggcg ggcgccaccc cgagcaggaa
      121 gagataactt ctcgcttcgc cgcgctgcaa cggaggctct ggggccgcgg cgcgggcgac
      181 gatgaaagct aggccggccg cgcggttgat tcgcgcgcat ggccggggcc atacttcccg
      241 catggatgtc gtagagacgc tcgccgggct cgtggccgtt gactccactt cttcacgcac
      301 gaacgccgag ataatccggc tactcgctcc gcgcctctcg gcgtggggca tgcacgtgcg
      361 atttctgcct tacgaggacg aggcgggcgt cgagaagata aacctcgtcg ccacgacgca
      421 cgacgcggac gaagtcgagc tcgcgctcgt cggccacacc gacaccgtgc cgtttgaccc
      481 cgagtggggc gaggctctca agctcacggg gcgcggcggg cggctctacg ggcgcggcgc
      541 gtgcgacacg aagggcttca tcgcggcggc gctcgcggcg gccgggcagg cggggttgaa
      601 gaatttgaga aagccgctgg ccctggtctt cacggcggac gaggaggtcg gatgcctggg
      661 cgcgaagcgg ctcgccgagg cgcgcccctt ccgagcgcgt tacgccgtcg tcggcgagcc
      721 aacgtcgctc cggcccgtgc gagcgggcaa gggctactgc cttgccgaaa ttctggtgcg
      781 cgggcgcgag ggccacagcg cctaccccga gtcgggcgcc tctgccgtca cgcgcgcggc
      841 gcggctcatc acgcgcatcg agcgcgtcgc cgaagagctt aagcgcgagg cacacgaagc
      901 cttcgacccg ccgcacacga ccgtaaacgt cgggctcata cgcggcggca cggcgaagaa
      961 catcatcgcg ggcgagtgcc gttttactct tgaatggcgg cccgtgccgg ggcagaggcc
     1021 ggagcgcgtg gcggagatgg ttagccgcga ggccgaggct ctgcgggccg aggacgcgga
     1081 cttcgactgc gaggtgcgcg tcacgcgact ggacgcgggc atggagacgc ccgccgcctc
     1141 cgcgctcgtg cgcgagctgg aggcggccac cggctttagc gcaggcacca tctccttcgg
     1201 caccgaagcg ccgcagatgg cagagctcgg cgcggaggcg gtcgtcttcg gccccggcga
     1261 catacggacg gcgcaccgca cgggcgagtt cgtccccgag gaagagctgc gcggcgccgt
     1321 ctcgattctg cgccgcgcaa tcgaacgctt ttgcggcccg gagcatcaat aagcttggcc
     1381 gcacgattat gaatttaaga aaaaccctat tccttacggc gatgctcctg tgctccttcg
     1441 cgctcggctg cgcaggcgcg gcgcgcgcgc aggcgcagca gcagcaggcg ccgctcacca
     1501 acgaagagtt cctcgccgtc gtgcggcagc tctcgaagcg gccttcgctc aaggagcagc
     1561 tcatcgaaga cctgcgtcgg cgcgggatag gcttcccgct gacgccgggc cttcgctcgt
     1621 tcgtggctac gcgcagcggc aacgacgcgg acctgcgccg cgccctcgaa gaggccgagc
     1681 ggcgccgcct caaccccggc gaggccgcgc tgcttccgcc ctcggccgcc gaggccgagt
     1741 cgctcctcgc caagacgcgc gccgcgacgc tcgaagccgc ggagcggatg cccgacttcg
     1801 tcgtcaagca attagtcacc cgctcctacg cgcgcgggag gacgcagaac tgggtaacgt
     1861 cagaccgcct gaccgtcggc gtcagctacc gcgtcgaggg cggcgagcat taccgcctgc
     1921 tcgccgtcaa cggcatcgcg agccccgcct cggcgcagtc ggacgagcgc tcggactact
     1981 cggcggccgg cggcacgaac tcgacgggcg agttcgtgac cgcgctcagg tcaatcttct
     2041 cggaggaggc ccgcgcgcag ttcagggccg tcgagaccgc ctccttgcgc ggccggcgca
     2101 cgatcgtcta tgagtacgag gtcaagcggc cgaactcgat aaaggtgctc gcctacaaca
     2161 acgagcgctc ggtcgtcgtc ggccaccgcg gccgactctg ggttgaccgc gagttgggcc
     2221 gcgtgctgcg ggtcgagagc gacgccaccg aaatacccgc ggacttcccc gtcgtcgcct
     2281 cgcgcagaga gctggattac gactgggtga agatcgaggg gcagggcgag taccttttgc
     2341 cctcgcgcgc cgtgctcgtg atgaccgtct cgcaggacgg cgaggtctat cagagccgca
     2401 acgacatacg cttccgtggc taccagaagt acggcacgga gcttcgcatc atcgaggacg
     2461 acatactcga cgaggaggtg ccggccgaga agccccctga gaagccaccg aagccgtgac
     2521 gggtgagagg ggcggccaaa agggcgaagc ccggagcgtc aggctccggg cttcgccctt
     2581 ttggccgccg gcccgcctca aatcttgagc tggcctgcct cgatgatggc cttaccgtcg
     2641 agcaggacgg tggcgcgcgt gagcgagggg aagtagccga aggggctgtt gttgtcgccg
     2701 c
//
LOCUS       DASPKR010000778         3799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_1808600, whole genome shotgun sequence.
ACCESSION   DASPKR010000778 DASPKR010000000
VERSION     DASPKR010000778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 3799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3799)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3799
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1808600"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1272
                     /locus_tag="VD968_20260"
     CDS             <1..1272
                     /locus_tag="VD968_20260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16785.1"
                     /translation="AQLNAWLASNRAEAESRFVTSSSPPGTALTLYVVLCYRECPTDM
                     VPIPGEPCRDENELMAPSRLADDFRLELRFDPPEQTEEDAVRDFVEWLKGIEVVEAGG
                     STLEDFLAAVREASHLWKSPPDSPPTDYMYGSPPAGVTIPASRVCQYLRAAFRVWTTE
                     LRPRWRPEWFDSHPCCEEHTQDKEKKKPEECVLLAELRVPLVHDAINDVWKVSDTADV
                     RINEERRPYLLSLRMIQEWLLCGGGAAGMTPAAEGGAGGGAGSGGAGGGGAGGGGAGG
                     GAGGAATGSPIVAAGRFDVEGRVPRGEGFTFGDLRVVRSSTNRLLYSLHGSWFNPNIR
                     NFKYVVKGAGVATLQRGATNPGTFFEVIQLSEEEYAREFAREIGASPPTLPARNPGMV
                     VRIFHVNLSELREPLDAGFMVEISRYNVRTL"
     gene            1269..2555
                     /locus_tag="VD968_20265"
     CDS             1269..2555
                     /locus_tag="VD968_20265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16786.1"
                     /translation="MKAKRLKEVISDDGIRWVNFFNGRLLSGEDLSSEQGANRKGLRR
                     LGRAVGSGVAYGLEVSAAPGVNSLETPLVSVRPGLAVNGEGQTLSLKGEAIVSLTRPS
                     NAAAEHGLTGDVFDDCTPLQAGTYLASAGIYLLTIAPARQSEGRAPVSGLDNITARCN
                     TRYNVEGVQFRLLQIDVSAAVLSDAARLRNRVAYLCFGAGDAARPSLRSDLFDSPPPA
                     GLLDSLRPGLLTDCDVPLAIINWTTTGGIVFVDNWAVRRRIAAHPAEGHAGALIGDEA
                     KAAAEARFLQFQEQLEWMGEKEPNVSAVIASQRFDFLPPAGVLPLAGGAQQAGFMRLK
                     FFEGLTVRAPVFIEGARVEQVLRQSLSYAPVSLGTREMLWLYEVRENAQDIADRVALR
                     PARPYMIFTTGHMPFYGEARFDLSRWNYSNYSSLFD"
     gene            2584..>3799
                     /locus_tag="VD968_20270"
     CDS             2584..>3799
                     /locus_tag="VD968_20270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYE16787.1"
                     /translation="MSTRFTPSGGTRTNAADAGELTLSLREVVERLGSRLPAQTLDEL
                     VREIVLSRRTEVRPGELITAELMNQILFRLTSLEARVAALEARGGTTPAPGPLTITEL
                     IPANSVRLDSPLEVRGRNFGFSTGALRITLDNVAQNEVTSGSDERVVFVVRNIRDVTA
                     TGKPVILLLNNGTSADERRILVTGAQDVGGTAEINIGEPDPRTIQSLQPVTFRCTLTS
                     QATLRTTFNVAARATSTVSPEQWQQAQISVLNSDGRPITATTFELDPRQSVNFIVRIE
                     SVPRVATGTAFTLNVTATSGRVTGSSSREFMVGQPTVPEDTENIPVFSFASASPSTII
                     NQTRDTITLRSGQEGAIVLRAEFAAVATYDVTLLFDPDPRGWVAALTEPAPAPGASRL
                     SGTYDIRSLDQNG"
BASE COUNT          642 a         1329 c         1231 g          597 t
ORIGIN      
        1 gcgcagctca acgcgtggct ggcctcgaac cgcgccgagg ccgagtcacg ctttgtcacc
       61 tcctcgtcgc cgccggggac tgcgctcacg ctctacgtcg tgctctgcta ccgcgaatgc
      121 ccgacggaca tggtaccgat acccggcgag ccgtgccgcg acgagaacga gctgatggcg
      181 ccttcgcgac tcgcggacga cttccgcctc gagcttcgct tcgacccgcc agagcagacg
      241 gaggaggacg ccgtccgcga cttcgtcgag tggctcaaag gcatagaggt cgtcgaggcg
      301 ggcggctcga ctctcgaaga tttcctcgcc gcagtccgcg aggcttcgca cctctggaag
      361 tcgccgcccg actccccgcc gaccgattac atgtacggct cgccgccagc gggcgtcacg
      421 atacccgcga gccgcgtctg ccagtacctg cgcgcggcat tccgcgtctg gacgacggag
      481 ctgcgcccgc gctggcggcc cgagtggttc gactcgcacc cttgctgcga agagcacacg
      541 caggacaagg agaaaaagaa gccggaggag tgcgtcctgc tcgccgagct ccgcgtgcct
      601 ctcgtccacg acgccatcaa cgacgtgtgg aaggtctccg acacggccga cgtgcggatc
      661 aacgaggagc gccgcccgta ccttttgagc ctccggatga ttcaggagtg gctgctgtgc
      721 ggcggcgggg ccgcgggcat gacgccggcg gccgaaggag gcgccggggg aggcgcgggc
      781 tcgggcgggg ccggcggcgg tggagctggg ggcgggggcg cgggtggcgg tgcgggcggt
      841 gccgcgaccg gctcgcccat agtcgccgcg ggcaggttcg acgtggaggg cagagtcccg
      901 cgcggggagg gcttcacctt cggcgacttg agagtcgtgc gaagctctac gaaccgcctc
      961 ctctactcgc tgcacggctc gtggttcaac cccaacatcc gaaacttcaa gtacgtcgtc
     1021 aagggcgcag gcgttgcgac cttgcagagg ggcgccacga accccggcac gttcttcgag
     1081 gtgattcaac tgagcgaaga ggagtacgcg cgcgagttcg cgagggagat aggcgcctcg
     1141 ccgccgacgc tccccgcgcg caaccccggc atggttgtgc gcattttcca cgtcaacctt
     1201 tcggagctgc gcgagccgct cgacgccggc ttcatggtcg agataagccg ctacaacgtg
     1261 agaacgttat gaaagccaaa cgactcaaag aggtgatctc ggatgacggc atccgctggg
     1321 tcaacttctt caacggccgc ctgctctcgg gcgaagacct cagcagcgag cagggcgcga
     1381 accgcaaagg gcttcgccgc ctcggccggg ccgtcggctc cggcgtggca tacggcctcg
     1441 aagtctcggc ggctcccggc gtcaactcac tcgagacccc gctcgtctct gtgcggcccg
     1501 gcctcgccgt caacggcgag gggcagacgc tctcgctcaa gggcgaggcc attgtctcgc
     1561 tcacgcgccc gtctaacgcg gccgccgagc atggcttgac cggcgacgtc ttcgacgact
     1621 gcacgccgct acaggctggc acttacctcg cgtcggcggg catttatctg ctgacgatag
     1681 cgcccgcgcg acaatcggag gggcgcgcgc ccgtctccgg cctcgacaac atcaccgccc
     1741 gctgcaacac gcgctataac gtcgagggcg tgcagttccg cctgctacag atagacgtga
     1801 gcgcggccgt cctctcagac gccgcgcgcc ttcgcaaccg cgtcgcatac ctctgcttcg
     1861 gcgccggcga cgcggcgcgg ccctcgctgc gctcggacct cttcgactcg ccgccgcccg
     1921 cgggtctcct cgactcgctg cggccgggcc ttctgacaga ctgcgacgtg cctctcgcca
     1981 taatcaactg gacgacgacc ggcggcatcg tcttcgttga caactgggcc gtacgccgcc
     2041 gcatcgccgc ccacccggcc gaaggtcacg ccggcgctct catcggcgac gaggcaaagg
     2101 cggccgccga ggcgcgcttc ttgcagtttc aagagcagct cgaatggatg ggcgagaagg
     2161 agccgaacgt atcggcggtc atcgcctccc agcgcttcga cttcctgccg cccgccgggg
     2221 tcctcccgct tgccggcggg gcgcagcagg cgggcttcat gcggctaaaa ttcttcgagg
     2281 ggctcacggt gcgcgcgccc gtcttcatcg agggggcgag ggtcgagcag gtcttgcgcc
     2341 agtcgctctc ctacgcgccc gtgagcctcg gaacgcgcga gatgctctgg ctctacgagg
     2401 tgcgcgagaa cgcgcaggac atcgctgacc gcgtggcgct gcggcccgcg cgcccctaca
     2461 tgatcttcac gaccggccac atgcccttct acggcgaggc ccgtttcgac ctgtcgcgct
     2521 ggaattacag caactactcg tcgctattcg actaaagcca ggccgtgagg gaggagagag
     2581 aatatgtcca cacgtttcac accatcaggc ggcacgcgga cgaatgctgc cgacgcgggc
     2641 gagttgacgc tctcactgcg cgaggtcgtc gaaaggctag gctctaggct ccctgcgcag
     2701 acgctcgacg agcttgtgcg cgagatagtc ctcagccgcc gcacagaggt caggccgggc
     2761 gagttgataa cggcggagct gatgaaccaa atcctcttcc gcctcacctc actcgaggca
     2821 cgcgtcgccg cgctcgaagc gcgcggcggc acaacgcccg cccccggccc gctcaccatt
     2881 accgagctga tcccagcgaa ctcggtccgg ctcgacagcc ccttagaggt gcggggccga
     2941 aacttcggct tttcgaccgg ggcgctacgc atcacgctcg acaacgtcgc gcagaatgag
     3001 gtcacgagcg gctccgacga gagggtggtc ttcgtcgtca ggaacataag ggacgttacg
     3061 gcgacgggca agcccgtcat tctcctcctg aacaacggga ctagcgccga cgagcgtagg
     3121 attcttgtca ccggcgcgca ggacgtgggc gggactgcgg aaatcaatat cggcgagcca
     3181 gacccgcgca ctatacagtc gctccagccc gtaaccttcc gctgcacgct tacctcgcag
     3241 gcgacgctcc gaaccacctt caacgtggcg gcccgcgcca ccagcacggt ctctcccgag
     3301 cagtggcagc aggcgcaaat ctccgtgctc aacagcgacg gcaggccgat cactgccacc
     3361 accttcgagc tcgacccgcg ccagtccgtc aactttatcg tccgcatcga gagcgtgccg
     3421 agggttgcga ccggcactgc gttcacgctg aacgtgacgg cgacttcggg gcgggtcacc
     3481 ggctcctcct cgcgcgagtt catggtcggg cagccgacag tcccagagga caccgagaac
     3541 atcccggtct tttcgttcgc ttcggcctcc cccagcacga taatcaacca gacgcgtgac
     3601 accatcacgc tgaggtccgg gcaggagggc gcaatagtgc taagggcaga gttcgccgcc
     3661 gtagcgacgt acgacgtaac gctcctgttc gaccccgacc cgcgcgggtg ggtggcggcc
     3721 ctgaccgagc ccgcgcccgc gcccggcgcc tcacgtctgt ccggcactta cgacatccgc
     3781 tcgctcgacc agaacggca
//
LOCUS       DASPKR010000779         2033 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_772893, whole genome shotgun sequence.
ACCESSION   DASPKR010000779 DASPKR010000000
VERSION     DASPKR010000779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 2033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2033)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_772893"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1066
                     /locus_tag="VD968_20275"
     CDS             <1..1066
                     /locus_tag="VD968_20275"
                     /inference="COORDINATES: protein motif:HMM:NF015019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0009678 - diphosphate hydrolysis-driven
                     proton transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sodium/proton-translocating pyrophosphatase"
                     /protein_id="HYE16788.1"
                     /translation="FGFGLVAFGFLGMGPVTIAVDSYGPVTDNAQSVYELSLIEQVPN
                     VEEEVKKDYGVTVNFDRAKHLLEENDGAGNTFKATAKPVLIGTAVVGATTMIFSIIMA
                     LTEGLRPEFLGNLSLLHAPFMLGLITGGAVIYWFTGASTQAVTTGAYRAVEFIKANIR
                     LEGIERASEEDSKKVVEICTRYAQKGMFNIFLTVFFASLAFAFVEPYFFIGYLISIAI
                     FGLYQAIFMANAGGAWDNAKKIVEVELKAKGTPLHDATVVGDTVGDPFKDTSSVAMNP
                     VIKFTTLFGLLAVELAVSLTRQNEGDTTLTHILAAAFLIISLFFVWRSFYGMRIDSEG
                     LEGVGEMGTDSEAIGKGAAG"
     gene            1155..1748
                     /locus_tag="VD968_20280"
     CDS             1155..1748
                     /locus_tag="VD968_20280"
                     /inference="COORDINATES: protein motif:HMM:NF014669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HYE16789.1"
                     /translation="MSTSYAKAETLVGAVAAPEGWARSAALVVGFSLLTALAAQVVIP
                     LPWTPVPVTGQTFAVLLTGALLGSRLGALAMLAYLAEGAVGLPFFRGGAGGAAHFAGA
                     TAGYLLAFPAAAFLTGLLAERGWDRRFATAAASMALGSVVILASGWAWLALFFMSAGE
                     AFAAGVLPFLAGDVVKIALASAALPAGWAVLRRKRSR"
BASE COUNT          326 a          654 c          672 g          381 t
ORIGIN      
        1 cttcggcttc ggcctcgtcg ccttcggctt cctcggcatg gggccggtga cgattgccgt
       61 tgactcctac ggccccgtga ccgacaacgc gcagtccgtc tatgagcttt cgctcatcga
      121 gcaggtgcct aacgtcgagg aagaggtcaa gaaggactac ggcgtgaccg tcaacttcga
      181 ccgagccaag cacctcctcg aagagaacga cggcgcgggc aacaccttca aggccacggc
      241 caagcccgtg ctcatcggca cggcggtggt gggcgccacc acgatgatct tctcgatcat
      301 catggcgctc accgagggcc tgcggcccga gttcctcggg aacctgtcgc tcctgcacgc
      361 gcccttcatg ctcgggctga ttacgggcgg cgccgtcatc tactggttca cgggcgcgtc
      421 aacgcaggcg gtcacgaccg gggcctaccg cgccgtcgag ttcatcaagg cgaacatccg
      481 tctcgaaggc atcgagaggg cgagcgagga ggactcgaag aaggtcgtcg aaatctgcac
      541 gcgctacgcg cagaagggga tgttcaacat cttcctgacg gtcttcttcg cctcgctggc
      601 cttcgccttc gtcgagccct acttcttcat cggctacctc atctccatcg ccatcttcgg
      661 cctctaccag gccatcttca tggctaacgc gggcggcgcg tgggacaacg ccaagaagat
      721 agtcgaggtg gagctgaagg ccaagggcac gccgctgcac gacgcgacgg tcgtgggcga
      781 caccgtcggc gaccccttca aggacacgtc gtcggtggcg atgaaccccg tcatcaagtt
      841 cacgacgctc ttcggcctgc tcgccgtcga gctggccgtg agcctgacgc gtcagaacga
      901 gggcgacacc acccttacgc acatactcgc cgcggccttc ctaatcatct cgctcttctt
      961 cgtctggcgc tccttctacg gcatgcgcat tgactccgag gggctcgaag gcgtcggcga
     1021 gatggggacg gacagcgagg ccatcggcaa gggcgccgcg gggtaagaac aagcgcggaa
     1081 ggcagggcgc agagggatga attaaaacct ctgcaccctg cgctccgcac tcatcacttc
     1141 tttcggaggt tcatgtgagc acttcttacg cgaaggcgga gactctggtc ggcgccgtgg
     1201 ccgcgcccga ggggtgggcg cgctcggctg cgctcgtcgt gggtttcagt ctgcttacgg
     1261 ccctggcggc gcaggtcgtc ataccgctac cgtggacgcc cgtccccgtg accggccaga
     1321 cgttcgcggt gcttctaacg ggggcgctct tgggctcgcg gctgggggcg ctggcgatgc
     1381 tggcgtatct ggctgaaggc gccgtcggcc tccccttctt ccggggcggg gcgggcggcg
     1441 cggcccactt cgcgggggcg accgccggct acctgctcgc gttcccggcc gccgcgttct
     1501 tgacggggct gctggccgag cgcggctggg acaggaggtt tgcgacggcc gcagcctcaa
     1561 tggcgttagg ctccgtcgtc atactcgcct cgggctgggc ctggctcgct ctcttcttca
     1621 tgagcgcggg cgaagcgttc gccgcgggcg tcctgccgtt cctcgcgggc gacgtggtta
     1681 aaatcgcgct ggcctcggcg gcccttcccg caggctgggc ggttctccgc cgaaaacgct
     1741 cgcgctagat tcaagacagc ctcgctttta agctcgcagg cccgttagcc gctgacgcgg
     1801 ctcgcgggcc tctttgtttc tgcctcaaaa aattttccct tgacactgct acgactattg
     1861 tagtagatag aacctcaact gtagtaaata cgcctcgggg ccgccgtgga gggagagacg
     1921 aaggtgaagc ttacgaaatt cgagttggaa gtgatggagg cgctgtgggc gctggggagc
     1981 ggctcggtgc gggaggtgca ggagcgcctg ccggagggga agcgcccggc cta
//
LOCUS       DASPKR010000780         9615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Pyrinomonadaceae bacterium isolate SMAG_U12041
            k141_776346, whole genome shotgun sequence.
ACCESSION   DASPKR010000780 DASPKR010000000
VERSION     DASPKR010000780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37944964
            Sequence Read Archive: SRR7003766
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Pyrinomonadaceae bacterium (soil metagenome)
  ORGANISM  Pyrinomonadaceae bacterium
            Bacteria; Acidobacteriota; Blastocatellia; Blastocatellales;
            Pyrinomonadaceae.
REFERENCE   1  (bases 1 to 9615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9615)
  AUTHORS   Ma,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 01:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,064
            CDSs (total)                      :: 4,013
            Genes (coding)                    :: 3,988
            CDSs (with protein)               :: 3,988
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 1 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9615
                     /organism="Pyrinomonadaceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_776346"
                     /isolate="SMAG_U12041"
                     /isolation_source="soil"
                     /db_xref="taxon:2283092"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="33.3 N 116.25 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(289..519)
                     /locus_tag="VD968_20285"
                     /pseudo
     CDS             complement(289..519)
                     /locus_tag="VD968_20285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_263577166.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thrombospondin type 3 repeat-containing protein"
     gene            complement(554..3288)
                     /locus_tag="VD968_20290"
                     /pseudo
     CDS             complement(554..3288)
                     /locus_tag="VD968_20290"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LamG-like jellyroll fold domain-containing
                     protein"
     gene            complement(3715..5355)
                     /gene="bamD"
                     /locus_tag="VD968_20295"
     CDS             complement(3715..5355)
                     /gene="bamD"
                     /locus_tag="VD968_20295"
                     /inference="COORDINATES: protein motif:HMM:TIGR03302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0065003 - protein-containing complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HYE16790.1"
                     /translation="MRFRNVVFVVLCAALQVSALPLASATAYARQSQLTPMQRIEVMR
                     SRLDTMRRTLNSAIAGLNAKDKAQAGADDPRARLAGLEKEVGSVLSEVNDVRGKQERA
                     DRYDTSVLDKLEQAVADLDTRTQAAMRETASDRRTAPAAAAASKKDKKKPGFFGRILG
                     RGGDDKYDELIGTVAPGRDRQLFEDATKEARKDNYETARSLYGVVINTYADSPFLPLA
                     KLAIADTFYLEGTTAALIQAGQAYQDWVTFFPTHPLADDVMLKMAEVEMRRMGLPDRE
                     MGPARKAEQRLKAFFQQFPKSSLTPDAEIKLVEVQENLAMHNMLVGNHYYEKYYRQAA
                     TNLKGAQGRYREIVEKYPRFSHMAEVLFRLGTTYMEEEEPDEATKYFQQLVRFHPNSE
                     FAEKAKERLATIGAQVPDPDPSRADEPEPEGPGFFGGLMREITGVVPKTVNKDGVIIS
                     RNSKGSDIIEAVINNGGTLPDNYNTLPVNRTAPARNVAPLPPAGAAKPAAGDAKKEFT
                     AQPTQPGGPRSGSDPAKPAATQPTQPATPPPAGSAAKP"
     gene            complement(5456..6118)
                     /gene="rpe"
                     /locus_tag="VD968_20300"
     CDS             complement(5456..6118)
                     /gene="rpe"
                     /locus_tag="VD968_20300"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HYE16791.1"
                     /translation="MVEIAPSILSADFTRLGEEIAAAERGGASIVHVDVMDGHFVPNI
                     TVGLPVVKSLARATRLPLDTHLMISEPGRYAEQFAEAGARMVSVHVEADPHIHRTLTA
                     IRKRGAQAGVVINPATPLGALDEALQFADYVLVMSVNPGFGGQEFIPTSLEKIRRLRR
                     TIDERGLNVRIEVDGGVGLDNIGKLAAAGAEVFVAGTAVFGQGDPARAVRDLLAATAQ
                     LV"
     gene            complement(6150..6827)
                     /locus_tag="VD968_20305"
     CDS             complement(6150..6827)
                     /locus_tag="VD968_20305"
                     /inference="COORDINATES: protein motif:HMM:NF015734.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PASTA domain-containing protein"
                     /protein_id="HYE16792.1"
                     /translation="MRGILSAFGKLFVVALLAVAFAFGLLASVYLSLRSPSIQVPDVV
                     NKNYADGQTELGRAGLDMRERARRYKPDVPPGVILDQSPRAGEVVKAGQTIAVVVSRA
                     PKEGEQPPSEEVAEERREEEKRGTRTENLGENANRNANGARRRSANKNTNSNAAANSN
                     LNANGSQNTSAAGNRNAASPRNANAAPAGANRNANRGAPNANATRPRTTNSSTGRTGV
                     NANRRQP"
     gene            complement(6988..8382)
                     /gene="rsmB"
                     /locus_tag="VD968_20310"
     CDS             complement(6988..8382)
                     /gene="rsmB"
                     /locus_tag="VD968_20310"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: protein motif:HMM:NF011494.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HYE16793.1"
                     /translation="MSKRVRVVKKGGKVAAPEGRGVSKARAAAFEILRRVEEEGAYAA
                     PLLAGAAERLSTEDRSLCYELVLGVLRRQLWLDKLAEHFAGRGADELDAPVRRALRLG
                     LYQLRFTSRVPARAAVNESVNLVHASRVRHAAPFANAVLRRATREPDFDPAADIKDPL
                     ERVAVSTSHPTWLVARWAESFGAEWAEAFARANNDAAPASFRVNTLREGEEKVLERLR
                     EAGVAASPSRVAPGGWRAEGGAGAGRLLRELAAGGLIYMQDEASQLVAHVLGAREGER
                     VLDVCAAPGGKTTHAAALAGDRALIVAGDLHEGRLRLVRESCERLGVESVTAVALNAE
                     AGLPFADATFDRVLLDAPCTGTGTLRHNPEIRWRLTPERAAELPPVQRRILSESARGV
                     RPGGRLVYSTCSVEREENEDVLAAFLHERSDFRQVPAAPAPDALLLPSGAARTWPHRD
                     DVDGFFVAALRRRD"
     gene            complement(8412..9347)
                     /gene="fmt"
                     /locus_tag="VD968_20315"
     CDS             complement(8412..9347)
                     /gene="fmt"
                     /locus_tag="VD968_20315"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HYE16794.1"
                     /translation="MRLVFMGTPESAVPTLRRCVEDGHEVAAVWTQPDRPAGRGNKLA
                     APPVKEFALSRGLAVHQPAKIKTAEALALFESHAADATVVVAYGRILPPAFLRAPRMG
                     CVNVHFSLLPKYRGAAPVNWAIVRGESVSGVTTMLMDEGLDTGPVLLQSATQIGKDET
                     APELLARLSHAGAELLSETLARLSEIEPSRQDDSLATHAPILKRGDGLIDWSLGAEEI
                     ARRVRGFQPWPNAHTTLAGKRLIIWRAAPAQAEAALTTGAPGEVIAARGDELLVACGL
                     GTVLRVEELQPEGRQRMRARDFLNGARVGVGDMLG"
     gene            complement(9409..>9615)
                     /locus_tag="VD968_20320"
     CDS             complement(9409..>9615)
                     /locus_tag="VD968_20320"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYE16795.1"
                     /translation="REFHVGNLYLNRKCTGALVGVHPFGGFNMSGTDSKAGGRDYLGL
                     FMQAKVVSEKIRPGYSNKEKRGAI"
BASE COUNT         1435 a         3083 c         3326 g         1771 t
ORIGIN      
        1 ctgaccgggg ttccacttgc cgatgatgcc ggcgttgccg ttggcgtggt cggtcttgcg
       61 aacccaagcc atgaccgtta tctcgtttgc gccggtcagg cctgtgagct ggccgacgtc
      121 aactgagtcg tcaacgccgt caaagttaaa ggcttggccc gagagcccgc ccgcgtagcc
      181 cgcgccgttc tggggcgtgc cgttgtcgaa ggtcggcccc tgtatgtcgt gcgcgttgcc
      241 gtcggccggc caccaagccg ccatgttcga cggcacggct gcgcagccgt tgagagggtc
      301 gcaggcgtct cctatgccgt caccgtccgt gtcctcctgg ttcgggttcg actccgcagg
      361 gcagttgtcc tgcccatcgg ccgcgtcgtc gccgtcgtcg tccgcgtcgc aggcgtcgcc
      421 ctgagagtcg gagtccgcgt cctcctggcc ggggttgtag gcgagcgggc agttgtcatc
      481 gtcgttggcg acgccgtcgc cgtcggagtc gggcggcagg acgcactctt ccaaactctc
      541 gacgtaacgc gcgactgcga agttctcaac cccgccgatg acggcgtagc cgacggcgac
      601 gacgcgcccg tcgggctgga tggctaggtc gttaatctcg tcgttcgagc cgagagaggt
      661 gacggccttg ccgtcgaagt cgaacgtgtt gtcgggcgag ccgtcggagt tgtagcgcgc
      721 gagcgcgaag ttcctgttgt tcgcctgcgt ctcggagaag cctccgacga cgattcggcc
      781 gtcgggctgc acctccatcg cgtagccctg gtcgttgccg cccaggttgg tcgtgagcct
      841 gccgtcgtcg ctgaaggtca cgtcgggcga gccgtcggag ttgtagcggg ctaaggcgaa
      901 gtctatgtcc gcgccgttgc tcgcgaggcc agcgacgagg agcttgccgt ctgacaacac
      961 cgtcacgtcg tgggcgtagt cggtgccacc gccgaaatcc gtgccgaagg tacccgcgcc
     1021 ggcgaagccc gaatcggtgc tgccgtctga gttgacgcgc gccacggccc agttccagct
     1081 cgcgccgttg tgggagtagc cgacggctac gattttaccg tcgggctgca cggcaacgtc
     1141 gcgcgcgagg tctgggctgc ccgcgacgtt gtggagcgtc gtctcgccgt cgcccgtgaa
     1201 cgtggtgtcg agcgtgccgt tcgtgttcag gcgcgcgatg aggatttctt cggcttggcc
     1261 cgagaagacc gcgtagcctg cgacgacgat cttgccgtcg ggctgcaagg cgacggcgta
     1321 ggcgcggtcg ccgccattgc tgaagttgag gctcacggtg ccgtcggcgt cgccgtcgaa
     1381 cgtcgtgtcg agcgtgccgt taggattgag tcgcagggcg aggaagttgt cgccgccgcc
     1441 ggccgggacg ttggtgtagc caacggctac gatcttgccg tcgggctgca cggccacgtc
     1501 catagccacg tcgccgtcgt tgctggcgtt atagacgaag acgccgtcgc cgtcgaaggt
     1561 agtgtcgtgc gtgccgtcgg ggttgagtcg cgcgaccgtg aagttgttgc cctgcccgct
     1621 cgcgttagag tagccggcga gcacgatctt cccgtccggc tggagcgcga cgccgttcgc
     1681 ggcgttgaag gaggggccga cagcgaacgt gcgcgccccc gtcccgttga aggtcagatc
     1741 aagcccgccc gcggggacag gcccccaaga cgggtattcg tcaaccgcgc cgacgaacgt
     1801 gaggcgggtc acgcccgtgc cgtcggcatt catgacgtag atttcatggt tgccgtcgcg
     1861 agtagatgtg aaagtgattc tggtgccgtc gggcgagaat gccgggtagg agtcggctgc
     1921 ggggttgctg gtcaggcggg cctgattaga gccatcggcg cccatcacat agacttcttc
     1981 gttgccgtcg cgagtagata cgaaagcgat tctggtgccg tcgggcgaga agactggcct
     2041 agagtcagac gccgggttat tggtcaggcg cgtctggccc gagccgtcgg cattcatcac
     2101 atagatttca tagttaccgt cgcgtaatga gtcgaaggcg attcgagtgc catcgggcga
     2161 gaatgtcgga tagaagtcat gcgcggagtt attggtcaag cgcgtctggt tcgagccgtc
     2221 ggcattcatc acgtaaatct caaagttgcc gttccggtcg ctgtcgaatg cgatcttcaa
     2281 gccgtcgggc gaccaagaag ggtaggtgtc ggcggcggga ttgttggtga ggcgggcctg
     2341 accggttccg tcggcattca tcacatagat ttcgccgttg ttatcgcggt cgctgcggaa
     2401 agcgatcttc gtgccgtcgg gcgagaaggt tggggcggtg tcgtcgagcg cgctcgtggt
     2461 gaggcgcgtc tggcccgtcc cgtccgggtt catcgtatag atttcgtagt cgccgttgcg
     2521 gttgctgtgg aacgcgatct tgccgttgac gcgcacgcat gcgcggcacg cgcccgaagc
     2581 gcccgcgtcg tgtatggcct cgatttccgc ggccgtgagc gcgcggctga agatttcgac
     2641 ttcgtcaatc agacccttga agtagtctga agaaccctgg gcgttgtttc caatgcggat
     2701 gttcctgtcc agagtgttaa tatcaaacag gctttccgaa gccgttccgt cttgcactcc
     2761 gtcaatatac agcctcgtgg tcgcgccatc gttagtacac gcgacatgat ggaagccccc
     2821 gtcgataatg cttcttgagc tttgggcgaa agtgccgaat tcattgccgt ccgcgatgca
     2881 ctctacggtg ccgtttaagt tgaccgagat gatgtaaacg ccttccacag agatgatgcg
     2941 tcgcctgtta gcagattgcg tatcagcttt gacccacgca tccaaggtca gcccggcagg
     3001 catacttaat acgttgttgg cggttccgac ttcatcattt atcccgtcga actggaacgc
     3061 ctgcccgacc ttgccggtcg cgtaggtcgc gccgttgacg agcgtgccgt tgtggccgcc
     3121 cgcgctgtcg ccggccgtgt actcggcctt gtaccaggcg acgaggcccg acggcggcgc
     3181 cgcacactct ccttcggact gaacagaggc ggtctgttga aaggttaaga acagggccag
     3241 cgagcagagg gctgcgaggg taaggcgcag gggcaagcgg ggggacatta atgattctcc
     3301 ttggggccga tgctgccaac tcttcggggc gcgggcgtgg ggcgggcgcc tcgaagttat
     3361 atgtaagtcg gttgtgaaag atttcggcgt cggtggctcg cagccgctgc ggtcgttcgg
     3421 gggcgcaagg ctgcgtgtct tcgcgttcgg ggcctcgggc gcagaaaacc gcgcgcgaag
     3481 ggctgaatgg ctttacgggt tattcaagaa caaatgagaa ggcgcgctcg atagggtgcg
     3541 ggaaatcaag gccccgctaa ggcgcgcccg cgctcgcgga gggtgacaat ctacatgcgg
     3601 ggagaggaaa tttcaagcgc cggccgtgca gctaaacgcc gaaggcgccc gcgcttcatc
     3661 tctcgttggc gaagcgcggg cgccttcctt tcggtgacgt gccgagcggg agccttacgg
     3721 cttggcagcg ctccccgcgg gcggaggcgt cgcgggctgc gtcggctgcg tcgccgcggg
     3781 cttcgcgggg tcgctccccg acctcgggcc gccgggctgc gtgggctgcg ccgtgaactc
     3841 cttcttggcg tcgcccgcgg caggtttcgc cgcgccggcg ggcggcagcg gcgcgacgtt
     3901 gcgcgcgggg gcggtgcggt tgacgggcag agtgttgtag ttgtcgggca gcgtcccgcc
     3961 gttgttgatg acggcctcga tgatgtcgct gcccttgctg ttgcgactga tgatgacgcc
     4021 gtccttgtta actgtcttag gcacgacgcc cgttatctcg cgcatgagcc cgccgaagaa
     4081 gccggggcct tccggctcgg gctcgtcggc gcgcgaaggg tccgggtcgg ggacttgcgc
     4141 gccgatggtc gcgagccgct ccttggcctt ctcggcgaac tcgctgttcg ggtggaagcg
     4201 gacgagctgc tggaagtact tcgtcgcctc gtccggctcc tcctcctcca tgtaggtcgt
     4261 ccccagacgg aagagcacct cggccatgtg cgagaagcgc gggtacttct ccactatctc
     4321 gcggtagcgc ccctgtgcgc ccttcaggtt cgtcgccgcc tgccggtagt acttctcgta
     4381 gtagtggttc cctacgagca tgttgtgcat ggcgaggttc tcctgaacct ctacgagctt
     4441 aatctcggcg tcgggcgtga gagacgattt cgggaactgc tggaagaagg ccttgaggcg
     4501 ctgctcggcc ttgcgcgcgg gccccatctc gcggtcgggc aggcccatcc gcctcatctc
     4561 gacctcggcc atcttgagca tcacgtcgtc cgcgagcggg tgcgtgggga agaacgtgac
     4621 ccagtcctgg taagcctgcc cggcctgtat gagcgcggcc gtcgtgcctt cgaggtagaa
     4681 ggtgtccgcg atggctagct tggcgagagg gaggaagggc gagtcggcgt aggtgttgat
     4741 gacgacgccg tagagcgagc gcgccgtctc gtagttgtcc ttgcgcgcct ctttggtggc
     4801 gtcctcgaag agctgacggt cgcggcccgg ggccaccgtg ccgatgagct cgtcgtactt
     4861 gtcgtcgccc ccgcggccga gtatgcggcc gaagaagccg ggcttcttct tgtccttctt
     4921 cgaggcggca gcggccgcgg gcgccgtgcg gcggtcgctc gcggtctcgc gcatggcggc
     4981 ctgcgtgcgc gtgtcgaggt ctgcgacggc ctgctccaac ttatcgagca cgctcgtgtc
     5041 gtagcggtca gcgcgctcct gcttgccgcg cacgtcgttg acttcgctca agaccgagcc
     5101 gacttccttc tccagcccgg cgaggcgggc gcgcgggtcg tcggcgccgg cctgcgcctt
     5161 gtccttggcg ttgaggccgg cgatggcgct gttgagcgtg cggcgcatcg tgtcgagccg
     5221 cgagcgcatc acctcgatgc gctgcatggg cgtcaactgc gactgccgcg cgtaggccgt
     5281 cgccgacgcg agcggcagcg ccgacacctg aagcgcagcg cacaggacaa caaaaacgac
     5341 gttgcggaaa cgcatgtgga acctccaaaa aagcaagtgc ggaatgcgga gcgcagagtg
     5401 atgaattaaa ggcagagtct gttaattcat cactctgcgc tccgcgctca tcacttcaaa
     5461 ccagttgcgc cgtcgcggcg agcaggtcgc ggacggcccg ggccgggtcg ccctggccga
     5521 agacggccgt gccggccacg aaaacttcgg ccccggcggc ggccaacttc cctatgttgt
     5581 cgaggccgac gccgccgtca acctctatgc gcacattgag gccgcgctcg tcaatcgtgc
     5641 ggcgcaggcg gcgtattttt tccagcgatg tcgggatgaa ctcctgcccg ccgaagccgg
     5701 ggttgacgga catgacgagc acataatcgg cgaattgcag ggcctcgtcc agcgcgccca
     5761 acggtgtcgc cgggtttata accacgcccg cctgcgcccc gcgcttcctg atggcggtca
     5821 gagtcctgtg gatatgcggg tcggcctcga cgtggacgga aaccatgcgc gcgcccgcct
     5881 ccgcgaactg ctcggcgtag cggcccggct cggaaatcat tagatgcgtg tccaggggca
     5941 aacgggtggc tcgcgccagg gacttaacta cgggcagccc gacggttatg ttcggcacaa
     6001 aatggccgtc catcacgtca acgtggacga ttgaggcgcc gccccgctcg gcggccgcaa
     6061 tctcctcgcc cagtcgcgtg aaatcggctg aaaggatgga cggcgcgatt tcgaccattt
     6121 tgacttcgtt ctcccggagc gtcgtcgcct taaggctgac gccggttcgc gttgacgccg
     6181 gtgcggccgg tcgaagagtt cgttgtgcgg ggccgcgtcg cgttcgcgtt cggggcgccg
     6241 cggttcgcgt tgcggttcgc gccggctggg gccgcgttcg cgttgcgcgg tgacgccgcg
     6301 ttgcggttcc ccgccgccga agtgttctgg ctgccgttcg cgttcaggtt cgagttggct
     6361 gcggcgttcg agttcgtgtt tttgtttgcg ctgcggcgcc gcgcgccgtt ggcgttgcgg
     6421 ttcgcgttct cgccgaggtt ctcggtgcgc gtgccgcgct tctcttcctc gcgccgctcc
     6481 tcggccacct cctcggacgg cggctgctcg ccctccttcg gcgcgcggct gacaacgacg
     6541 gcgatggtct gccctgcctt cacaacctcg cccgcgcgcg gcgactggtc gagtatgacg
     6601 ccgggcggca cgtccggctt gtagcggcgg gcgcgctcgc gcatgtcgag gccggcgcgc
     6661 cccagttcag tctgaccgtc agcgtagttc ttgttgacaa cgtcggggac ttggatagag
     6721 gggctgcgaa gcgagagata gacggacgcg agcaggccga aggcgaaggc gacggccagc
     6781 agcgcgacca cgaagagctt accgaacgcc gacaggatgc cccgcaaatc tttgacctct
     6841 ccgccgcacc tctaaaacgt ttggggaatg tgaactcagg cccgccgcgc gccgggcata
     6901 ccaagtggcg cagtctaaca cccgccattc gcgccccgca agggagggat gacgaaggca
     6961 accggttggt ttaccgccaa cttaaaatta atcgcgcctt ctgagagccg cgacgaagaa
     7021 gccgtcaacg tcgtcgcggt gcggccaggt gcgcgcagcg ccggacggga gcagcagggc
     7081 gtcgggcgct ggcgcggccg gcacctgccg gaagtcggag cgttcgtgaa ggaaagcggc
     7141 gagcacgtct tcgttctctt ccctctcgac cgagcaggtg gaatagacga ggcggccgcc
     7201 gggccgtacg ccgcgcgcag actcagagag tatgcgccgc tggacgggcg gaagctcggc
     7261 cgcgcgctcg ggcgtgaggc gccagcggat ttcagggttg tgccggagcg tccccgtccc
     7321 cgtgcaggga gcgtccagga gaacgcggtc gaacgtcgcg tcggcgaagg gcaggcccgc
     7381 ctcggcgttt aaggcgaccg ccgtgacgct ctccacgccg agacgctcgc aggactctct
     7441 caccagccgc aggcggcctt cgtgcaagtc gcccgccacg atgagggcgc ggtcgccggc
     7501 cagcgcggcc gcgtgtgtgg tctttccgcc cggcgccgcg caaacgtcaa ggacgcgctc
     7561 gccctcgcgc gcgccgagca cgtgcgcgac gagttgcgaa gcctcgtcct gcatgtagat
     7621 tagccctccg gccgcaagct cgcgcaggag acggccggcg cccgcgcctc cctccgcgcg
     7681 ccacccgccc ggcgccacgc gcgaaggcga ggccgcgacg cccgcctcgc gcagcctttc
     7741 taaaaccttc tcttcgccct cgcgcagagt gttcacgcgg aaggaggcgg gtgccgcgtc
     7801 gttgttggcg cgcgcgaacg cttcggccca ctcagcgccg aacgactcgg cccagcgcgc
     7861 gacgagccac gtcgggtgcg aagtcgagac ggcgaccctc tcaagcgggt cttttatgtc
     7921 ggctgcgggg tcgaagtcgg gctcgcgcgt cgcgcgtcgg aggacggcgt tggcgaaggg
     7981 cgcggcgtgg cgcacgcgcg acgcgtgcac gaggttgacg gactcgttga cggcggcgcg
     8041 cgccggcact cggctggtga agcggagttg ataaaggccg aggcgcaggg cgcgacggac
     8101 gggcgcgtca agctcatcgg cgcctcggcc cgcgaagtgc tcggcgagtt tgtccagcca
     8161 gagttgccgg cgcagcacgc cgagcacgag ctcgtagcag agcgagcggt cttccgtcga
     8221 gagcctttcg gccgcgcccg cgagcagagg cgccgcgtag gcgccctcct cctctacgcg
     8281 ccgaagaatc tcgaaggccg cggcgcgcgc cttcgatacg ccacgcccct ccggcgccgc
     8341 taccttcccg cccttcttaa ccacgcgcac gcgcttgctc acgccctgac cgctccccgc
     8401 ctcggccgcc tctaacccag catgtccccg acgccgactc tcgcgccgtt gaggaagtcg
     8461 cgcgcacgca tgcgctgtct gccttcgggc tgcaactctt cgacccgcag cacagtcccc
     8521 agtccgcacg cgaccagaag ctcgtcccca cgcgccgcga taacttcgcc gggcgcgccc
     8581 gtcgtcaacg ctgcctccgc ttgggcgggc gccgcgcgcc agatgatgag acgcttgccc
     8641 gccagcgtcg tgtgcgcgtt cggccacggc tggaagccgc gcacgcgccg ggcgatctcc
     8701 tcggcgccga gcgaccagtc aatcagcccg tccccccttt tgagtattgg cgcgtgagtg
     8761 gcgagtgagt cgtcctgacg gctcggctca atctcagaga ggcgcgcgag cgtctcgctc
     8821 aaaagctccg cgcccgcgtg cgacaggcgg gcgagaagct ccggcgccgt ctcatccttg
     8881 cctatctgcg tcgcgctctg caaaagcacc ggccctgtgt ccagcccctc gtccatcagc
     8941 atcgtcgtca ctcccgacac gctctcgccg cgcacgattg cccagttgac gggcgcggcc
     9001 ccgcggtatt tcgggagcaa agagaagtgg acgttcacgc aacccatgcg gggcgcgcgg
     9061 aggaaggcgg gggggagtat gcggccgtat gcgacgacga cggtggcgtc cgccgcgtgc
     9121 gactcgaaga gcgcgagcgc ctccgccgtc tttatcttcg ccggctggtg gacggcgagc
     9181 ccccgcgaga gcgcgaactc cttgacgggc ggcgcggcga gtttgttgcc cctgcccgcc
     9241 ggcctgtccg gctgagtcca gacggccgcg acctcatgcc cgtcctccac gcaacgcctc
     9301 agcgtcggca cggccgattc cggcgtcccc atgaagacta ggcgcatagg aagaaaagaa
     9361 ggccggggcg gaagagaggc attctaactt ccgccccggc catcccgttc agatcgcgcc
     9421 gcgcttctcc ttgttggagt agccggggcg gattttctcg ctgacgactt tggcctgcat
     9481 gaagaggccg aggtagtcgc ggccgccggc cttcgagtcg gtgccgctca tgttgaagcc
     9541 gccgaagggg tggacgccga cgagcgcgcc cgtgcacttg cggttgaggt agaggttgcc
     9601 gacgtggaac tcgcg
//
